BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (753 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 1537 bits (3980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/753 (100%), Positives = 753/753 (100%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA
Sbjct: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN
Sbjct: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT
Sbjct: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV
Sbjct: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED
Sbjct: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI
Sbjct: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR
Sbjct: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR
Sbjct: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL
Sbjct: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ
Sbjct: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH
Sbjct: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN
Sbjct: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS
Sbjct: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score = 1335 bits (3456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/752 (85%), Positives = 695/752 (92%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D   NS+ LVEEN  +VSL+ ALEERYLAYALSTIKERAIPD RDGFKPVHRRIIHA
Sbjct: 1   MGSDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDF AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ FVQRYPLI GQGNFGN
Sbjct: 61  MSEMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVA+LILQGVDE+AVDFRDTYNEEDSEPVVFP KFPNLLANG+
Sbjct: 121 IDGDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNV+EICEAAL LI++PE S+EKLLE+IIGPDFPTGGIIVESRESI 
Sbjct: 181 SGIAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIF 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+WCVE++GRGSWCIVV+EIPYQVQKSRLIEKIA+LI+ KRIPLLED
Sbjct: 241 ESYRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVLFPKNRS+DPDLLMES+F+LSD+ETRFPLNMNVLSMGRVPQVM LDG+
Sbjct: 301 IRDESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRSSFRMQAIDRRVE+LKGL IAYLNIDEIIAIIRNEDKPK VM+SR
Sbjct: 361 LKEWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSVMISR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQ DAILNLRLRSLRKLEEYQIKSELDNLL EK+ ++ LLNS K+QW+QIACEIR
Sbjct: 421 FSLTENQADAILNLRLRSLRKLEEYQIKSELDNLLLEKDNLNLLLNSEKKQWDQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRT FCE  + DK  +QQAMIEKEP+TVVIS RGWIRSLK HS+DL
Sbjct: 481 EVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQAMIEKEPVTVVISKRGWIRSLKGHSIDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL+FKEGD LKIA HA+TT+RILL STDG+AYTLP GNLLSGRGHGEAIQLLID+NHNQ
Sbjct: 541 SALNFKEGDGLKIAFHAYTTERILLFSTDGRAYTLPVGNLLSGRGHGEAIQLLIDINHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+ AFV D TCKLL VS+KGNAFIV+ES+II NTRKGK F KVSS + MKLVVKV GD+
Sbjct: 601 DIMAAFVQDPTCKLLFVSNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIF IDQIPEM+RGKGVRLQSYKDGG+SDV+CF I EGLTW+DSAGRS+N
Sbjct: 661 VAVVGENRKLLIFPIDQIPEMNRGKGVRLQSYKDGGVSDVVCFNISEGLTWVDSAGRSFN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           RS++DL+ WLGKRGG GSLVPKGFPRSG F S
Sbjct: 721 RSKDDLIRWLGKRGGAGSLVPKGFPRSGNFFS 752


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/737 (65%), Positives = 618/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII+++RESI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D +AL FKEGD LKI
Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTAALTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +S+++L+ WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKSKDELVEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ATAGRTVPKGFPRSGKF 749


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/745 (66%), Positives = 611/745 (82%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +E LL          I GPDFPTGG+IVESR S++ESYR 
Sbjct: 192 HNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D ++L F
Sbjct: 492 FAKATELGKRRSTFADAPEADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTTSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK++  A TTD+IL+ +T GK YTL +  L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDALKVSFPAQTTDKILIFTTGGKVYTLGSDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + VS  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGGISD+ CF I EGLTW DSAGR + +++++
Sbjct: 672 ENRKMLVFPLAQVPEMARGKGVRLQRYKDGGISDIRCFSIAEGLTWEDSAGRVFTKTKDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           LL W+G R G G +VPKGFPRSGKF
Sbjct: 732 LLEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/745 (65%), Positives = 610/745 (81%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+ W+G R G G +VPKGFPRSGKF
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/745 (65%), Positives = 610/745 (81%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+ W+G R G G +VPKGFPRSGKF
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/745 (65%), Positives = 608/745 (81%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 7   DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 67  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 127 AKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +E LL          I GPDFPTGGIIVESR S++ESYR 
Sbjct: 187 HNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRT 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 247 GRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 306

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 307 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G L+AYLNIDE+I IIR ED+PK +M+ RF+LT+
Sbjct: 367 AHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAMMIERFALTD 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 427 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D SAL F
Sbjct: 487 FAKATELGKRRSTFADAPDADIEAIQQAMIEKEPITVVISEKGWIRALKGHISDTSALQF 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK+A  A TTD+IL+ +T GK YTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 547 KDGDALKVAFPAQTTDKILVFTTGGKVYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 606

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V   ++ KLVV   GDHVAVVG
Sbjct: 607 LVHDPARKLIVSSAAGNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKGDHVAVVG 666

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +NRK+L+F + QIPEM+RGKGVRLQ YKDGGISD+ CF + EGLTW DSAGR + +++++
Sbjct: 667 DNRKMLVFPLAQIPEMARGKGVRLQRYKDGGISDIRCFTMAEGLTWEDSAGRVFTKTKDE 726

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+ WLG R G G LVPKGFPRSG+F
Sbjct: 727 LVEWLGDRAGAGRLVPKGFPRSGRF 751


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/744 (65%), Positives = 603/744 (81%), Gaps = 8/744 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +NV  + L++ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMG+   +AFKK
Sbjct: 13  DNVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGDSAAAYRYTEA
Sbjct: 73  CARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDSAAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA L+L+G+++DAVDFR TYNEED EPVV P  FPNLLANG SGIAVGMATSIP H
Sbjct: 133 RMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGASGIAVGMATSIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLE--------YIIGPDFPTGGIIVESRESIVESYRLG 246
           N  E+C+AAL LI N   S+E+L           I GPDFPTGGI++ESRES++E+YR G
Sbjct: 193 NAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVIESRESMLETYRTG 252

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RGGFRVRA+W  E++GRG + IV+T+IP+QVQKSRLIEKIAEL+IAKR+PLLEDIRDESA
Sbjct: 253 RGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAKRLPLLEDIRDESA 312

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           EDVR+VL PK+R++DP +LMES+F LS++E+R PLNMNVLS G+VP+VM L+ +L EWL 
Sbjct: 313 EDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPKVMALNEVLLEWLD 372

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           HR++VL RRS FR+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+ K  +++RF LT+N
Sbjct: 373 HRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEAKDALIARFELTDN 432

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S   QW  IA EI EVK+ +
Sbjct: 433 QAEAILNMRLRNLRKLEEFEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKY 492

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +K+TD+GRRRT F     AD   +QQAMIEKEPITVVIS +GWIR+LK HS D  +L FK
Sbjct: 493 AKATDIGRRRTLFANAPDADVDAIQQAMIEKEPITVVISEKGWIRALKGHSYDKVSLTFK 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD L++A  A TTD+ILL++T GK YTL    L  GRGHGE I++++D+ ++QD++TAF
Sbjct: 553 EGDGLRVAFPAQTTDKILLVTTGGKVYTLGGDKLPGGRGHGEPIRIMVDMENDQDVLTAF 612

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           V+D   KLL+ S+ GN FIV ES+I ANTRKGK  + V   ++ KLVV ++GDHVAVVGE
Sbjct: 613 VHDPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISGDHVAVVGE 672

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRK+++F + Q+PEMSRGKGVRLQ YKDGG+SD+ CF + +GL+W DSAGRS+ RS+++L
Sbjct: 673 NRKMVVFPLAQVPEMSRGKGVRLQRYKDGGVSDIKCFTLADGLSWEDSAGRSFTRSKDEL 732

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
           L WLG R G G  VPKGFPRSGKF
Sbjct: 733 LEWLGDRAGPGRTVPKGFPRSGKF 756


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/737 (65%), Positives = 618/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D   K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ASAGRTVPKGFPRSGKF 749


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/737 (64%), Positives = 618/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D   K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ASAGRTVPKGFPRSGKF 749


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/750 (66%), Positives = 612/750 (81%), Gaps = 2/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D +  S    ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHA
Sbjct: 1   MGKDLVPPSGG--DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN
Sbjct: 59  MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG 
Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+
Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 239 DAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL PKNR++D  LLMES+F LSD+E+R PLNMNVLS+G+VP+VM L+ +
Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLAHR++VL RRS  R+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+PK VM++R
Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMAR 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+NQ +AILN+RLR+LRKLEE++I+ E D+L  EK +I+ LL S  +QW  +A EI 
Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLASDDKQWQTVAWEIG 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ ++K+T++GRRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D 
Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL FKEGD  K+A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++Q
Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+TAFV+D + KLL+VS+ GN FIV ESE+IANTRKGK  + VS  ++ KL V VTGDH
Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDH 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR++ 
Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRAFT 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +   +L  WL  R  VG  VPKGFPRSGKF
Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/737 (65%), Positives = 616/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LKI
Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+L+T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILILTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L  WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ATAGRTVPKGFPRSGKF 749


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/737 (65%), Positives = 619/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + I++TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL
Sbjct: 253 AKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK+RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN
Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F E   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  + + L FKEGD LK+
Sbjct: 493 RRRTQFAEAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHISETATLTFKEGDGLKV 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D T K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPTRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L  WLG R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLFWEDSAGRTFTKNKDELAEWLGDR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ASAGRTVPKGFPRSGKF 749


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/737 (64%), Positives = 613/737 (83%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+
Sbjct: 13  DDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR
Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL
Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL 
Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS FR+ AIDRR+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+ QV+AILN
Sbjct: 373 RRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDIQVEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++G
Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LKI
Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K
Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F
Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGGISDV CF I  GL W DSAGR++ +++++L  WL  R
Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISGGLVWEDSAGRTFTKNKDELAEWLADR 732

Query: 734 GGVGSLVPKGFPRSGKF 750
              G  VPKGFPRSGKF
Sbjct: 733 ATAGRTVPKGFPRSGKF 749


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score = 1015 bits (2624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/736 (63%), Positives = 603/736 (81%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AMS+MGL  G +FKK
Sbjct: 12  DDIQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSDMGLRSGGSFKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVGEV+G  HPHGDQS+YD+LVRLAQ F  RYPL++GQGNFGNIDGD+AAA RYTE+
Sbjct: 72  CAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNIDGDNAAAMRYTES 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT VAEL+++G+ EDAVDFR TY+EE+SEP V P  FPNLLANG +GIAVGMATSIP H
Sbjct: 132 KMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGATGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI  P+ ++E LLE++ GPDFPTGGI++ESRE+++E+Y+ GRGGFRVRA
Sbjct: 192 NAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLEAYKTGRGGFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG + IV+TE+PYQVQKSRLIEKIAEL+IA+R+PLL+D+RDESAEDVR+VL 
Sbjct: 252 KWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDVRDESAEDVRLVLI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP LLMES+F L+D+E+R PLN+NVLSMGRVP+VM L  +L EWLAHRREVL R
Sbjct: 312 PKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVLSEWLAHRREVLQR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+ AI+RR+E+L G LIAYLN+DE+I IIR ED+PK  ++  F L++ Q +AILN+
Sbjct: 372 RSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPKLELMKTFELSDVQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE +I+ E D L AEK +I+SLL S  +QW  +A E+  V++ FSK T+LG 
Sbjct: 432 RLRSLRKLEELEIRKEFDALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGA 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F E   AD A ++QAMIEKEPITVVIS +GWIR +K H  D ++L FK+GD LK+A
Sbjct: 492 RRTNFAEAPVADLAAIEQAMIEKEPITVVISEKGWIRGMKGHLPDFASLQFKDGDGLKLA 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA+TTD++++++T GKAYTL A  L  GRGHGE +++++D++++Q ++TAFV+DS  KL
Sbjct: 552 FHANTTDKLVIVTTGGKAYTLGADKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDSARKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S+ GN FIV ES+++ANTRKGK  + V   ++ +L V V+GDHVAV+GENRK+LIF+
Sbjct: 612 LMASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSGDHVAVIGENRKMLIFA 671

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+PEMSRGKGVRLQ YKDGGI+D+ CF + +GLTW DSAGR++NR++ +L  W+  R 
Sbjct: 672 LSQLPEMSRGKGVRLQRYKDGGIADIRCFAMADGLTWEDSAGRAHNRTQAELTEWIADRA 731

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFPRSGKF
Sbjct: 732 QAGRLVPKGFPRSGKF 747


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/737 (66%), Positives = 607/737 (82%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMG+   +AFK
Sbjct: 12  DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 ARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+E+Y+ GRGGFRVR
Sbjct: 192 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILEAYKTGRGGFRVR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLED+RDESAEDVRIVL
Sbjct: 252 AKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDVRDESAEDVRIVL 311

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++D  LLMES+F LSD+E+R PLNMNVLS+GRVP+VM L+ +L EWLAHR++VL 
Sbjct: 312 VPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVLSEWLAHRKDVLV 371

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS  R+ AIDRR+EIL GLL+AYLN+DE+I IIR ED+PK VM++++SLT+NQ +AILN
Sbjct: 372 RRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQVMMAKWSLTDNQAEAILN 431

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LRKLEE++I+ E D L +EK +I+ LL S ++QW  +A EI EVK+ ++K+T++G
Sbjct: 432 MRLRNLRKLEEFEIRKEFDELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIG 491

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D SAL FKEGD  K+
Sbjct: 492 RRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDTSALTFKEGDGPKL 551

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++QDI+TAFV+D + K
Sbjct: 552 AFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQDILTAFVHDPSRK 611

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+VS+ GN FIV ESE++ANTRKGK  + V+  ++ KL V VTGDHVAVVGENRKLL F
Sbjct: 612 LLLVSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTGDHVAVVGENRKLLAF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR + +   +L  WL  R
Sbjct: 672 PLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRLFTKVGEELREWLADR 731

Query: 734 GGVGSLVPKGFPRSGKF 750
             VG  VPKGFPRSGKF
Sbjct: 732 ATVGRTVPKGFPRSGKF 748


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/739 (63%), Positives = 599/739 (81%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G ++ 
Sbjct: 11  KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI +P+++ E+L ++++GPDFPTGGI+VE ++SI ESYR+GRG FR+R
Sbjct: 191 HNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  E   RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI+DESAED+RIVL
Sbjct: 251 SRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++WL HR+EVL 
Sbjct: 311 VPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLEHRQEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  ++SRF LTENQ +AILN
Sbjct: 371 RRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKQLISRFELTENQAEAILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++I+ E ++L AEKEK+ +LL S  +QW  I+ EI++V+  F   T LG
Sbjct: 431 MRLRSLRKLEEFEIRKEFESLKAEKEKLQNLLASPIKQWKIISEEIKKVRNTFGPETPLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF E  R D   +QQAMIEKEPIT+VIS +GW+R+LK H  D  AL FKEGDSLK+
Sbjct: 491 KRRTTFEEAPRHDLDDIQQAMIEKEPITIVISEKGWMRALKGHLNDYKALSFKEGDSLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+L+ST GK + + A +L  GRGHGE I+LL+D++   D++TAFV+ +  K
Sbjct: 551 AFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAEEK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+VSS GN FIV  +E+IANTRKGK  + V + +K+KL V+V GDHVAVVGENRK+LIF
Sbjct: 611 LLLVSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNGDHVAVVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEM+RGKGVRLQ YK+GG+ D   F + EGL+W D+A R +NR  +DL  W+G R
Sbjct: 671 SIEQIPEMNRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERIFNRQADDLFEWMGMR 730

Query: 734 GGVGSLVPKGFPRSGKFLS 752
            GVG LVP+GFP+SGKF++
Sbjct: 731 AGVGRLVPRGFPKSGKFIN 749


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/738 (64%), Positives = 614/738 (83%), Gaps = 1/738 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++++  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AMSEMGL   AAF+
Sbjct: 13  DDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSEMGLRPNAAFR 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE
Sbjct: 73  KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMATSIPS
Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN  E+C+AAL LI + + ++E L+E YI GPDFPTGGII++ R SI+ESY+ GRGGFRV
Sbjct: 193 HNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSIIESYKTGRGGFRV 252

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+W +E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLEDIRDESAED+R+V
Sbjct: 253 RAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDIRDESAEDIRVV 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PK+R++D  +LMES+F LS++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL
Sbjct: 313 LIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVL 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS FR+ AI++R+EIL G LIAYLNIDE+IAIIR ED+PKPVM+ RF LT+NQV+AIL
Sbjct: 373 QRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPVMMERFGLTDNQVEAIL 432

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLRKLEE++I+ E D L  EK +I+ LL S ++QW  +A EI EVK+ F+K+T++
Sbjct: 433 NMRLRSLRKLEEFEIRKEFDGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEV 492

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           GRRRT F E   AD A LQQAMIEKEPITVV+S +GWIR+LK H  + S L FKEGD+LK
Sbjct: 493 GRRRTQFAEAPEADDAALQQAMIEKEPITVVVSEKGWIRALKGHISETSTLTFKEGDALK 552

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A  A TTD+IL+++T GKAYTL    L  GRGHGE +++++D+ ++QD++TAFV+D   
Sbjct: 553 VAFPAQTTDKILIITTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTAFVHDPQR 612

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           K LV S+ GN F+V E+E++ANTRKGK  + +++ ++ KL+V V+GDHVAVVGENRK+++
Sbjct: 613 KQLVASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSGDHVAVVGENRKMVV 672

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F + QIPEMSRGKGVRLQ YKDGG+SD+ CF I +GLTW DSAGR++ +++++L  WLG 
Sbjct: 673 FPLSQIPEMSRGKGVRLQRYKDGGVSDIKCFAIADGLTWEDSAGRTFTKTKDELAEWLGD 732

Query: 733 RGGVGSLVPKGFPRSGKF 750
           R   G  VPKGFPR+G+F
Sbjct: 733 RSAAGRAVPKGFPRTGRF 750


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/737 (63%), Positives = 593/737 (80%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G ++ 
Sbjct: 11  KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI +P+   E L ++++GPDFPTGGI+VE +ESI ESYR+GRG FR+R
Sbjct: 191 HNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEESYRIGRGFFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  E   RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI+DESAED+RIVL
Sbjct: 251 SRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNRS+DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++WL HR+EVL 
Sbjct: 311 VPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLVHRQEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++RF LTENQ +AILN
Sbjct: 371 RRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKRKLINRFELTENQAEAILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++I+ E + L AEKEK+ +LL S  +QW  ++ EI++V+  F   T LG
Sbjct: 431 MRLRSLRKLEEFEIRKEFETLKAEKEKLQNLLASPIKQWKIVSEEIKKVRNTFGPETLLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF E  R D   +QQAMIEKEP+TVVIS +GW+R+LK H  D  AL FKEGDSLK+
Sbjct: 491 KRRTTFEEAPRHDLDDIQQAMIEKEPVTVVISEKGWMRALKGHLNDYKALSFKEGDSLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+L+ST GK + L A +L  GRGHGE I+LL+D++   D++TAFV+ +  K
Sbjct: 551 AFPAFTTDKIVLISTGGKFFALGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAEEK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+VSS+GN FIV  +E+IANTRKGK  + V S +K+KL   V GDHVAVVGENRK+LIF
Sbjct: 611 LLLVSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHGDHVAVVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEM+RGKGVRLQ YK+GGI D   F + EGL+W D+A R +NR  +DL+ W+G R
Sbjct: 671 SIEQIPEMNRGKGVRLQRYKEGGIVDAKTFNLSEGLSWQDTAERIFNRQADDLIEWMGIR 730

Query: 734 GGVGSLVPKGFPRSGKF 750
            GVG +VPKGFP+SGKF
Sbjct: 731 AGVGRMVPKGFPKSGKF 747


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/738 (61%), Positives = 586/738 (79%), Gaps = 2/738 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++   V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+H M  + L+    F K
Sbjct: 12  DSASPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTMRLLRLNPEQGFAK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+V+GK HPHGDQS+YD+LVRLAQPF  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 72  CARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNIDGDNAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+VA  +L G+ EDAVDFR TYNEED EP+V P  FPNLL NG+SGIAVGMATS+P H
Sbjct: 132 RMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSSGIAVGMATSVPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AALALID+P++ + +LL+++ GPDFPTGGIIVE R SI E+Y  GRGGFR+RA
Sbjct: 192 NAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIREAYETGRGGFRLRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E+ GRG+W +VVTEIPY VQKSRLIEKIAELI+A+++PLLED+RDESAED+R+VL 
Sbjct: 252 RWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDVRDESAEDIRVVLV 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R+++P+LLMES+F L+D+ETRFPLNMNVLS G+VP V+ L  +L+EWL HRREVL R
Sbjct: 312 PKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVLREWLDHRREVLVR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I++R+EIL G L+AYLNIDE+I IIR ED+PKPVM+ RF+LT+NQ +AILN+
Sbjct: 372 RSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPVMMERFNLTDNQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
           RLR+LRKLEE++I++E D L  EK +I++LL S  +QW  +  E+ +V++ F   K+  L
Sbjct: 432 RLRALRKLEEFEIRTEFDKLSEEKTQIEALLASEAKQWKTVRWEVAKVRQTFDPEKNPAL 491

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           GRRRTTF +    D   +QQAMIE+EPITV++S +GW+R++K H  DLS + FKEGDSLK
Sbjct: 492 GRRRTTFGDAPSHDLEDVQQAMIEREPITVILSEKGWLRAMKGHLTDLSTVVFKEGDSLK 551

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           ++ HA TTD+ILL +T GK YT+    L  GRGHGE +++++D+ ++Q +VTAF +D   
Sbjct: 552 LSFHAQTTDKILLFTTGGKFYTIGGDRLPGGRGHGEPVRIMVDMENDQAVVTAFAHDPER 611

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           +LL+ S  GN FIV E E++ANTRKGK  + V + ++ +L + V+GDH A+VGENRKLL+
Sbjct: 612 RLLIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDEARLCIPVSGDHAAIVGENRKLLV 671

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F ++Q+PEM RGKGVRLQ YKDGGI+D+  F I +GLTW DSA R++ RS+++L  W+G 
Sbjct: 672 FPLEQVPEMVRGKGVRLQRYKDGGIADLKTFAIADGLTWQDSADRTFTRSKDELAEWIGD 731

Query: 733 RGGVGSLVPKGFPRSGKF 750
           R   G + PKGFPR+GKF
Sbjct: 732 RAAAGRMAPKGFPRTGKF 749


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/739 (62%), Positives = 591/739 (79%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ G A+ 
Sbjct: 11  KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGQAYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMATSIP 
Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R
Sbjct: 191 HNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL
Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+EVL 
Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF LTENQ ++ILN
Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAESILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE+Q++ E D+L  EKEK+ +LLNS  +QW  IA EI  V++IF   T LG
Sbjct: 431 MRLRSLRKLEEFQLRKEFDSLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPETFLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD LK+
Sbjct: 491 KRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+TAFV++   K
Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+VGENRK+LIF
Sbjct: 611 RLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  N+L+ W+G R
Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWMGTR 730

Query: 734 GGVGSLVPKGFPRSGKFLS 752
            G G LVPKGFP+SGKF S
Sbjct: 731 AGTGRLVPKGFPKSGKFFS 749


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/739 (62%), Positives = 591/739 (79%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G A+ 
Sbjct: 11  KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLRLNPGQAYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMATSIP 
Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R
Sbjct: 191 HNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL
Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+EVL 
Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF LTENQ ++ILN
Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAESILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE+Q++ E D+L  EKEK+ SLLNS  +QW  IA EI  V++IF   T LG
Sbjct: 431 MRLRSLRKLEEFQLRKEFDSLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPETFLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD LK+
Sbjct: 491 KRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+TAFV++   K
Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+VGENRK+LIF
Sbjct: 611 RLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  N+L+ W+G R
Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWMGTR 730

Query: 734 GGVGSLVPKGFPRSGKFLS 752
            G G LVPKGFP+SGKF S
Sbjct: 731 AGTGRLVPKGFPKSGKFSS 749


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/737 (62%), Positives = 591/737 (80%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G ++ 
Sbjct: 11  KEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGHSYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI +P    E+L  +++GPDFPTGGI+VE ++SI ESYR+GRG FR+R
Sbjct: 191 HNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  E   RGS+ +VVTEIPYQVQKSRLIEK AEL++A+R+P+LEDIRDESAED+RIVL
Sbjct: 251 SRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIRDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP++LMES+F L+D E RFPLN+NVLS G+VP V+ L   LK+WL HR+EVL 
Sbjct: 311 IPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESLKQWLEHRQEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS +++  I+RR+EIL G LI YLN+DE+I IIR ED+PK  ++ RF LTENQ +AILN
Sbjct: 371 RRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPKKKLIDRFELTENQAEAILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++I+ E + L AEKEK+ +LL+S  +QW  I+ EI +V+++F   T LG
Sbjct: 431 MRLRSLRKLEEFEIRKEFETLRAEKEKLQNLLDSRTKQWKIISEEIIKVRKVFGPHTLLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D +AL FKEGD LK+
Sbjct: 491 KRRTTFEEAPRHDFDDIYQAMIEKEPVTIVISEKGWMRALKGHLSDYNALSFKEGDCLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+++ST GK + + A +L  GRGHGE I++L+D++   D++TAFV+ +  K
Sbjct: 551 AFPAFTTDKIVVISTGGKFFAIAANSLPGGRGHGEPIRILVDMDDEHDLLTAFVHHTQEK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+VSS GN FIV  +E+IANTRKGK  + V   +K+KL V V GDHVAVVGENRK+LIF
Sbjct: 611 LLLVSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKGDHVAVVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +I+QIPEMSRGKGVRLQ YK GG+ DV  F + EGL+W D+A R +NR  +DL+ W+G R
Sbjct: 671 AIEQIPEMSRGKGVRLQRYKQGGVVDVKTFNLSEGLSWQDTAERCFNRQASDLIEWMGVR 730

Query: 734 GGVGSLVPKGFPRSGKF 750
            GVG +VPKGFP+SGKF
Sbjct: 731 SGVGRVVPKGFPKSGKF 747


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/736 (61%), Positives = 585/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI+N +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAEDVR+VL 
Sbjct: 254 KWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDVRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLEHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S ++QW  I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D+  KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDAKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  + VTGDH+A+VGENRK+L+F+
Sbjct: 614 LLASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LAEIPEMGRGKGVRLQKYKDGGLLDLKPFTLESGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/739 (61%), Positives = 592/739 (80%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LRFAL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   ++ 
Sbjct: 11  KEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPEQSYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI +P+ + EKL ++++GPDFPTGGI+VE ++SI ESYR+GRG FR+R
Sbjct: 191 HNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEESYRIGRGFFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  E   RGS+ I+VTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL
Sbjct: 251 SRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G+VP V+ L   L++WL HR++VL 
Sbjct: 311 VPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESLQQWLEHRQQVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++ F LTENQ +AILN
Sbjct: 371 RRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKELINCFELTENQAEAILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSL KLEE++I+ E D L A+KEK+ +LL S  +QW  I+ EIR+V++IF   T LG
Sbjct: 431 MRLRSLHKLEEFEIRKEFDALKADKEKLQNLLASSTKQWKMISEEIRKVRKIFGPETLLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF E  R     + QAMIEKEP+T+VIS +GW+R+L+ H  D  AL FKEGD LK+
Sbjct: 491 KRRTTFEEAPRHAIDDIHQAMIEKEPVTIVISEKGWMRALRGHLSDYKALSFKEGDCLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I ++ST GK + + A +L  GRGHGE I++L+D++   DI+TAFV++   K
Sbjct: 551 AFPAFTTDKITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDDEHDILTAFVHNVEEK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL++SS GN FIV  +E+IANTRKGK  + V   +K+KL + V GDH+AV+GENRK+LIF
Sbjct: 611 LLLISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKVKLCIPVKGDHLAVIGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +I+QIPEMSRGKGVRLQ YK+GG+ D   F + EGL+W D+A RS+NR  +DL+ W+G R
Sbjct: 671 AIEQIPEMSRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERSFNRQAHDLIEWMGTR 730

Query: 734 GGVGSLVPKGFPRSGKFLS 752
            GVG +VPKGFP+SGKF++
Sbjct: 731 AGVGRMVPKGFPKSGKFIN 749


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/736 (61%), Positives = 584/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 KWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+NQ +AILN+
Sbjct: 374 RSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDNQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V + GDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSEIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/736 (61%), Positives = 582/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 RWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+
Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDTQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L  EK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V +TGDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSDIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/742 (60%), Positives = 594/742 (80%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+ + EE+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ 
Sbjct: 2   SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA
Sbjct: 62  AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VAEL+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMA
Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+C+AAL LI + + S E L ++++GPDFPTGGI+VE ++SI E+YR GRG
Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+R+RW  E   R S+ IV+TEIPYQ+QKSRL+EK AEL++A+R+P+LEDI+DESAED
Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAED 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VRIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+ P V+ L   L++WL HR
Sbjct: 302 VRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +EVL RRS+ R+  I+ R+EIL G LIAYLN+D++I IIR ED+PK  +++ F LTENQ 
Sbjct: 362 QEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEPKKELLTHFQLTENQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E +NL AE+EK+ +LL S  +QW  I+ EI++V++ F+ 
Sbjct: 422 EAILNMRLRSLRKLEEFEIRKEFENLKAEEEKLQALLGSNVKQWQMISEEIKKVRKKFAP 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG+RRTTF +  + D   + QAMIEKEP+T+VIS +GW+R+LK H  D  AL FKEG
Sbjct: 482 ETSLGKRRTTFEDSPKRDVDDIYQAMIEKEPVTIVISEKGWMRALKGHLNDYKALSFKEG 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  DI+TAFV+
Sbjct: 542 DCLKLAFPAFTTDKIVVVSTGGKFFTIGANTLPGGRGHGEPIRILVDMDNEHDILTAFVH 601

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++  KLL+VSS GN FI+ E+E+IANTRKGK  + V S +K+KL + V GDH+AV+GENR
Sbjct: 602 NAQGKLLLVSSYGNGFIISETEVIANTRKGKQIMNVKSPDKVKLCIPVKGDHIAVIGENR 661

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K+LIF I+QIPE+SRGKGVRLQ YKDG + D   F + EGL+W D+A RS+NR  ++L+ 
Sbjct: 662 KMLIFPIEQIPEISRGKGVRLQRYKDGVVVDAKTFNLSEGLSWQDTAERSFNRQADELIE 721

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W+G R G G L+P+GFP+SGKF
Sbjct: 722 WMGTRAGAGRLLPRGFPKSGKF 743


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/737 (62%), Positives = 587/737 (79%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G  + 
Sbjct: 11  KEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQPYA 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI NP    E L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R
Sbjct: 191 HNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL
Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP ++ L   L++WL HR+EVL 
Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESLQQWLQHRKEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS +R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++ RF LTENQ ++ILN
Sbjct: 371 RRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEPKKELILRFKLTENQAESILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE+QI+ E ++L  EKEK+ +LL S  +QW  IA EI  V++IF   T LG
Sbjct: 431 MRLRSLRKLEEFQIRKEFESLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPETFLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD LK+
Sbjct: 491 KRRTTFEEAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDCLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  +I+TAFV+++  K
Sbjct: 551 AFSAFTTDKIIVISTGGKFFTISANILPGGRGHGEPIRILVDMDNEHNILTAFVHNTQRK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L++SS GN FIV ES+IIANTRKGK  + V S + +KL + V GD++A+VGENRK+LIF
Sbjct: 611 RLLISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLCIPVEGDYIAIVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEMSRGKGVRLQ YKD  + DV  F + EGL+W D+A RS+NR  ++L+ W+G R
Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDSVVVDVKTFTLSEGLSWQDTAERSFNRRADELVEWMGTR 730

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G LVPKGFP+SGKF
Sbjct: 731 AGAGRLVPKGFPKSGKF 747


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/746 (61%), Positives = 593/746 (79%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++  S    +E ++ V L  AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  +
Sbjct: 2   SVKMSQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  KLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTEARMT+VA L+L+G++ED++DFR TYNEED EPVV P  FPNLLANG+SGIA
Sbjct: 122 NAAAMRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HNV E+C+AAL LI +P  + E L ++++GPDFPTGGI+VE ++SI ESYR
Sbjct: 182 VGMATSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+R+RW  E+  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DE
Sbjct: 242 TGRGLFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PKNR++D +LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++W
Sbjct: 302 SAEDIRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQW 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR+EVL RRSS+R+  I+RR+EIL G LIAYLN+D++I I+R ED+PK  ++  F LT
Sbjct: 362 LEHRKEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEPKKELIEHFKLT 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           +NQ +AILN+RLRSLRKLEE++I+ E ++L  E+ ++ +LL S  +QW  I+ EI +V++
Sbjct: 422 DNQAEAILNMRLRSLRKLEEFEIRKEFESLKTEEAQLQALLASNIKQWKMISDEITKVRK 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           IF   T LG+RRTTF +  + D   +QQAMIE+EP+T++IS +GW+R+LK H  D   L 
Sbjct: 482 IFGPETILGKRRTTFEDAPKHDVNDIQQAMIEREPVTIIISEKGWMRALKGHLNDYKMLS 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD LK+AL A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+T
Sbjct: 542 FKEGDCLKLALPAFTTDKIVVVSTGGKFFTIGANVLPGGRGHGEPIRILVDMDGEHDILT 601

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           AFV+++  K L+VS+ GN FIV E+E+IANTRKGK  + V S +K+KL V V GD+VAVV
Sbjct: 602 AFVHNAQEKRLLVSAYGNGFIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNGDYVAVV 661

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLLIF+I+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  +
Sbjct: 662 GENRKLLIFAIEQIPEMSRGKGVRLQRYKDGGVVDAKTFNLSEGLSWQDTAERSFNRQSD 721

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +L+ W+G R GVG LVPKGFP+SGKF
Sbjct: 722 ELIEWMGTRAGVGRLVPKGFPKSGKF 747


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/739 (62%), Positives = 585/739 (79%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ G A+ 
Sbjct: 11  KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGKAYT 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GKLHPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE
Sbjct: 71  KCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMATSIP 
Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R
Sbjct: 191 HNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL
Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+EVL 
Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++  F LTENQ ++ILN
Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPKKELIVCFKLTENQAESILN 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++I+ E D+L  EKEK+ +LL S  +QW  IA EI  V++ F   T LG
Sbjct: 431 MRLRSLRKLEEFEIRKEFDSLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDTFLG 490

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF +  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD LK+
Sbjct: 491 KRRTTFEDAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDCLKL 550

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+TAFVY+   K
Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMDKEHDILTAFVYNMEGK 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L++SS GN FIV E +IIANTRKGK  + + S + +KL + V GD++AVVGENRK+LIF
Sbjct: 611 RLLISSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSLKLCIPVKGDYIAVVGENRKMLIF 670

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           SI+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  ++L+ W+G R
Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGVVDAKTFTLSEGLSWQDTAERSFNRQADELVEWMGTR 730

Query: 734 GGVGSLVPKGFPRSGKFLS 752
            G G  VPKGFP+SGKF S
Sbjct: 731 AGAGRFVPKGFPKSGKFSS 749


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 29  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 88

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 89  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 148

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 149 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 208

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++PE  +E+L+                        + GPDFPTGGI
Sbjct: 209 HNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDFPTGGI 268

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+++YR GRG FRVRARW  EE  RG+W IV+TEIPYQVQKSRLIEKIAEL++
Sbjct: 269 LVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQKSRLIEKIAELLL 328

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+D+RDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 329 AKKLPLLDDVRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 388

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL GLLIAYLN+DE+I IIR ED
Sbjct: 389 PNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYLNLDEVIRIIREED 448

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK  ++ LL SG +Q
Sbjct: 449 EPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQ 508

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 509 WKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 568

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 569 AMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 628

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 629 ILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 688

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+SDV  F I EGL+W
Sbjct: 689 LCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIAEGLSW 748

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 749 QDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 787


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLA  F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YK GG+ DV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKGGGVCDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/735 (60%), Positives = 569/735 (77%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V+LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD GA FKK 
Sbjct: 6   GIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGFKKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VY++LVRLAQ F QRYPLI GQGNFGNIDGDSAAA RYTEAR
Sbjct: 66  ARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A  +L G+DEDAVDFR+TY+ ED EP+V P  FPNLLANG+SGIAVGMATSIP HN
Sbjct: 126 LTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+CEAA  LI NP      LL++I GPDFPTGG++V+    ++E+Y  GRG FRVRAR
Sbjct: 186 AFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W +E++GRG W +VVTEIPYQVQKSRLIEKIAEL++A+++PLL+DIRDESAEDVRIVL P
Sbjct: 246 WAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIVLVP 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++R++D  LLMES+F L+D+E+RFPLNMNVLS G+VP VM +  +L+EWL HR+ VL RR
Sbjct: 306 RSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVLIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I+ R+E+L G L+AYLN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 366 SQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKAELMRTFGLTDVQAEAILNMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E D L AE++++ +LL S  +QW +I  +I EV + +   T LGRR
Sbjct: 426 LRSLRKLEEMEIRKEHDKLSAERDELKALLGSEARQWTRIGKDIAEVGKAYGPETPLGRR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F E    D   LQQAMIEKEPITVVIS++GWIR+LK H  DLS+L FK+GD LK+A 
Sbjct: 486 RTGFSEAPGHDVEDLQQAMIEKEPITVVISDKGWIRALKGHQQDLSSLAFKQGDKLKLAF 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L++D+   QD+V+AFV+    KLL
Sbjct: 546 HAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVDMEEGQDVVSAFVHKPGRKLL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S +   F+V E++++ANTRKGK  L +++  +  L +   GDHVAV+G+NRKLL+F +
Sbjct: 606 VASDEARGFVVPETDVVANTRKGKQVLNLTAPNEAVLCIAAEGDHVAVIGQNRKLLVFPL 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM RG+GVRLQ Y+DG ++D + F   +GLTWIDS+GRS+NRS +DL  W G RG 
Sbjct: 666 AQVPEMGRGRGVRLQRYRDGHLADAVVFDGAQGLTWIDSSGRSFNRSLDDLADWRGDRGQ 725

Query: 736 VGSLVPKGFPRSGKF 750
            G L P GFPRS +F
Sbjct: 726 AGRLPPTGFPRSNRF 740


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I++ +EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  ++ LL SG +Q
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFTHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W
Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL +I++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK  ++ LL SG +Q
Sbjct: 432 EPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQ 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+EP+T+V+S +GW+R
Sbjct: 492 WKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I+
Sbjct: 552 AMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ K
Sbjct: 612 ILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           L  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+SDV  F I +GL+W
Sbjct: 672 LCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIADGLSW 731

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DSA R++NRS+ +L+ W+G R   G LVPKGFPRSG+F
Sbjct: 732 QDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGRF 770


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/736 (59%), Positives = 571/736 (77%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD G+ FKK
Sbjct: 12  DGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEA
Sbjct: 72  CARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGNVDGDNAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+ A+ +L G+DE+A+DFR+TY+ ED EP+V P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 132 RLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGSSGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+CEA   LI NP+  ++ LL++I GPDFPTGG++V    SI E+Y  GRG FRVRA
Sbjct: 192 NAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIREAYATGRGSFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W VE++GRG WC+V+TEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDES ED+R+VL 
Sbjct: 252 KWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESTEDIRVVLV 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++R++D  LLMES+F L+D+E RF LNMNVLS G+VP VM +  +L+EWL HR+EVL R
Sbjct: 312 PRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQVLREWLDHRKEVLIR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS +R+  I+ R+E+L+G LIAYLN+DE+I IIR ED  K  ++  FSLT+ Q +AILN+
Sbjct: 372 RSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDDAKAELIRTFSLTDVQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE +I+ E D L  EK+++  LL S  +QW +I+ EI E+ + +   T+LG+
Sbjct: 432 RLRSLRKLEELEIRKEHDKLTKEKDELTKLLGSDARQWTRISKEIAEISKAYGPETELGK 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT   E    D   +QQAMIEKEPITV+IS +GWIR+LK H  DLS L FK+GD+LK++
Sbjct: 492 RRTEQAEAPDHDLGDIQQAMIEKEPITVIISEKGWIRALKGHQSDLSTLSFKQGDALKLS 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD+IL+ ST GK +TL A NL  GRGHGE I+L+++++  QD+V AFV+ +  KL
Sbjct: 552 FHAETTDKILVFSTGGKFFTLSAANLPGGRGHGEPIRLMVEMDEAQDVVCAFVHKAGRKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S++   F+V E +++ANTRKGK  L +++  +  + V+  GDHVAV+G+NRKLL+F 
Sbjct: 612 LISSNEARGFVVGEDDVVANTRKGKQVLNLTAPAEATICVEADGDHVAVIGQNRKLLVFP 671

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + QI +M+RG+GVRLQ Y+DG I+DV  FK  +GLTW+DS+GRS+NRS  DL  W G RG
Sbjct: 672 MAQIAQMTRGRGVRLQRYRDGDIADVRVFKGEDGLTWVDSSGRSFNRSLEDLTDWRGDRG 731

Query: 735 GVGSLVPKGFPRSGKF 750
             G L P GFPRS KF
Sbjct: 732 QAGRLPPTGFPRSNKF 747


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/737 (59%), Positives = 572/737 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +++++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD G+ FKK A
Sbjct: 12  IESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+AAA RYTEARM
Sbjct: 72  RVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEARM 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A+ +L G+DE+AVDFR+TY+ ED EP+V P  FPNLL NG+SGIAVGMATSIP HN 
Sbjct: 132 TDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHNA 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+CEA   LI NP     +LLEYI GPDFPTGG++V  + SI E+Y  GRG FRVRARW
Sbjct: 192 FELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYETGRGSFRVRARW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE++GRG W IVVTEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDESAED+RIVL P+
Sbjct: 252 EVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESAEDIRIVLVPR 311

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM L  +L+EWL HR+EVL RRS
Sbjct: 312 SRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWLDHRKEVLIRRS 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R+  I+ R+E+L+G L+AYLN+DE+I IIR ED+PK  ++  F L++ Q +AILN+RL
Sbjct: 372 EYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKAELMQTFELSDVQAEAILNMRL 431

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I+ E D L AEK+ +  LL S  +QW +I+ EI ++ +++   T++G+RR
Sbjct: 432 RSLRKLEEMEIRKEHDKLSAEKDDLTKLLGSDARQWTKISKEIADISKVYGPETEIGKRR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T   E    D   +QQAMIEKEPITV+IS +GWIR++K H  DLS + FK+GD LK++LH
Sbjct: 492 TDKSEAPETDLIDIQQAMIEKEPITVIISEKGWIRAMKGHQTDLSGVVFKQGDKLKLSLH 551

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD+ILL ST GK +TL A  L  GRGHGE I+L+++++  QD+V AFV+     LL+
Sbjct: 552 AETTDKILLFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVNAFVHKPGRNLLL 611

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +++   F+V E +++ANTRKGK  L +S+  +  + V+ +GDHVA++GENRKLL+F + 
Sbjct: 612 ATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIGENRKLLVFPLV 671

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           QIP+M RG+GVRLQ Y+DG ISD+  FK  +GLTW DS+GRS+ RS ++L  W G+RG  
Sbjct: 672 QIPQMGRGRGVRLQRYRDGNISDIRVFKGEDGLTWTDSSGRSFTRSLDELADWRGERGQA 731

Query: 737 GSLVPKGFPRSGKFLSS 753
           G L P GFPRS KF  S
Sbjct: 732 GRLPPTGFPRSNKFGPS 748


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/734 (59%), Positives = 567/734 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD G  FKK A
Sbjct: 12  IEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGQGFKKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+AAA RYTEARM
Sbjct: 72  RVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEARM 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A+ +L G+DEDAVD+R+TY+ ED EP+V P  FPNLL NG+SGIAVGMATSIP HN 
Sbjct: 132 TDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHNA 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C A   LI NP+  +++LLE+I GPDFPTGG++V  + SI E+Y  GRG FRVRARW
Sbjct: 192 FELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIREAYATGRGSFRVRARW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE+GRG W IVVTEIPYQVQKSRLIEKIAEL+IA+++PLL+D+RDESAED+R+VL P+
Sbjct: 252 EVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDVRDESAEDIRVVLVPR 311

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM +  +L+EWL HR+ VL RRS
Sbjct: 312 SKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVLREWLDHRKVVLVRRS 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I+ R+E+L G LIAYLN+DE+I IIR ED  K  ++  F LT+ Q +AILN+RL
Sbjct: 372 EHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDDAKASLIRTFELTDVQAEAILNMRL 431

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I+ E D L  EK+++  LL S  +QW +I+ EI E+ +++   T++G+RR
Sbjct: 432 RSLRKLEEFEIRKEHDKLTDEKDQLTKLLGSDARQWTKISKEIGEIAKVYGPETEIGKRR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T   E   AD   +QQAMIEKEPITV+IS +GWIR+LK H  DLS+L FK+GD LK++ H
Sbjct: 492 TDKAEAPEADLVDIQQAMIEKEPITVIISEKGWIRALKGHQADLSSLSFKQGDKLKLSFH 551

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD+IL+ ST GK +TL A  L  GRGHGE I+L+++++  QD+V+AFV+     LL+
Sbjct: 552 AETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVSAFVHKPGRNLLL 611

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +++   F+V E +++ANTRKGK  L +++  +  L V  TGDHVA++GENRKLL+F + 
Sbjct: 612 SNNEARGFVVSEDDVVANTRKGKQVLNLTAPAEAALCVDATGDHVAIIGENRKLLVFPLA 671

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           QI +M RG+GVRLQ Y+DG +SD+  FK  +GLTW DS+GRS+ RS  +L  WLG RG  
Sbjct: 672 QIAQMGRGRGVRLQRYRDGNVSDIRVFKGEDGLTWTDSSGRSFTRSLEELSEWLGDRGQA 731

Query: 737 GSLVPKGFPRSGKF 750
           G L P GFPRS KF
Sbjct: 732 GRLPPTGFPRSNKF 745


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/736 (60%), Positives = 571/736 (77%), Gaps = 1/736 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G  +KK 
Sbjct: 13  DIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRILRLDPGQGYKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPLI GQGNFGN+DGDS AA RYTEAR
Sbjct: 73  ARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNVDGDSPAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DEDAVDF+ TYNEE+ EP+V P  FPNLLANG+SGIAVGMATSIP HN
Sbjct: 133 MTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSSGIAVGMATSIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+NP+ + + LL ++ GPD PTGG+IV+++  I E+Y  GRG FRVRAR
Sbjct: 193 AAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIREAYDTGRGSFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG + +VVTEIPYQVQKSRLIEKIAEL++A+++PLL DIRDESAEDVRIV+ P
Sbjct: 253 WETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDIRDESAEDVRIVIEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+LLMES+F L+D+E+R PLNMNVLS G+VP+VM L  +L EWLAH+R+VL RR
Sbjct: 313 KSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVLAEWLAHQRDVLVRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S FR+  I+RR+EIL G LIA+LN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 373 SRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKTELMRTFELTDTQAEAILNMR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE+++K E D L  EK + ++LL S ++QW  IA E+REV+E +SK T +GRR
Sbjct: 433 LRSLRKLEEFELKREFDTLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +        +  A+IEKEPITVV+S +G++R +K H  D S+L F+EGD L++A 
Sbjct: 493 RTMFADAPNRALDDITVALIEKEPITVVLSKKGFLRGMKGHLADFSSLAFREGDGLQLAF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD++L LST G+A+T  A  L  GRG GE I+L  +L  +QDI  AFV D   + L
Sbjct: 553 HAMTTDKLLFLSTGGRAFTHGADKLPGGRGQGEPIRLAFELEDDQDIALAFVADPERRRL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           +VSS GN F+  E++++ANTRKGK  + V+ + K+ L   V  GDHVA+VGENRKLL+F 
Sbjct: 613 LVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLLVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+P+M+RGKGVRLQ YKDGG+SD   F + +GLTW DSAGRS+ RSE +LL W G R 
Sbjct: 673 LVQVPQMTRGKGVRLQRYKDGGLSDARVFAMADGLTWTDSAGRSFTRSETELLEWRGDRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFP++ +F
Sbjct: 733 QAGRLVPKGFPKTNRF 748


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/735 (58%), Positives = 563/735 (76%), Gaps = 1/735 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V LR ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G A+KK A
Sbjct: 14  IQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRVLRLDPGQAYKKCA 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+G+ HPHGD ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGDSAAA RYTEARM
Sbjct: 74  RIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNVDGDSAAAMRYTEARM 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA L+L+G+DE+AVDFR TYNEED EPVV P  FPNLLANG+SGIAVGMAT+IP HN 
Sbjct: 134 TEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATNIPPHNA 193

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL +I+NP+ ++++LL  I GPDFPTGG+IV++R +I ++Y  GRG FRVRARW
Sbjct: 194 AELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQAYETGRGSFRVRARW 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG W +VV EIPYQVQKSRLIEKIAEL+ A+++PLL DIRDESAED+RIVL PK
Sbjct: 254 EREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADIRDESAEDIRIVLEPK 313

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP++LMES+F L+D+E+R PLNMNVLS G+VP+V+ L  +L EWLAH+REVL RR+
Sbjct: 314 SKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVLAEWLAHQREVLERRA 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I+RR+EIL G LI +LNID++I IIR ED+PK  ++  F+L++ Q +A+LN+RL
Sbjct: 374 RHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEPKQELMRFFTLSDVQAEAVLNMRL 433

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++++ E D L  EK + ++LL S ++QW+ +A E+R V+E FSK T LG+RR
Sbjct: 434 RSLRKLEEFELRREFDQLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKRR 493

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D   +  A+IEKE +T+V+S +G++R +K H  D S L F+EGD L IA H
Sbjct: 494 TRFADAPDHDIGDITTALIEKESVTIVLSKKGFLRGMKGHLADFSNLTFREGDGLNIAFH 553

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L +S  G+ +T+ A  L  GRG G+ I+L  DL    DI  AF  +   + L+
Sbjct: 554 AMTTDKLLFVSKHGRVFTMQADKLPGGRGQGDPIRLAFDLEDKDDIAAAFTAEPERRRLM 613

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           VSS+G  F+  E ++I+ TRKGK  + V     ++L  ++  GD VA+VGENRKLL+F +
Sbjct: 614 VSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLLVFPL 673

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+P+M+RGKGVRLQ YKDGG+SD   FK+ EGLTW DSAGR++ RS+ +L+ W G R  
Sbjct: 674 SQVPQMARGKGVRLQRYKDGGVSDAKVFKLSEGLTWSDSAGRAFLRSDEELMEWKGDRAQ 733

Query: 736 VGSLVPKGFPRSGKF 750
            G LVPKGFP++ KF
Sbjct: 734 AGRLVPKGFPKTNKF 748


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/739 (58%), Positives = 565/739 (76%), Gaps = 5/739 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+  A F K A
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPL+ GQGNFGN+DGD+ AA RYTEARM
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+G+ EDAVDFR TYNEED EP+V P+ FPNLLANG++GIAVGMAT+IP HNV
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C+AAL LI  P    +KL+E++ GPDFPTGGIIVES  S++E+Y+ G+GGFR+RARW
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E++GRG W IVVTEIPYQV KS+LIEK AEL++AK++PLL+DI DESAED+R+VL PK
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP LLME +F L+D+ETRFPLNMNVL  G+VP+VM +  +L+ WL HR+ VL RR+
Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I++R+E+L G +IAYLNIDE+I IIR ED PK  +++RF LT+ Q +A+LNLRL
Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQALIARFELTDAQAEAVLNLRL 444

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R+L KLEE +++ E  +L  EK  I+ LL S + QW  IA E+ + K+ FSK+TDLG RR
Sbjct: 445 RALHKLEEMELRKEFSDLKEEKASIEGLLASDELQWKTIAWEVGQTKKKFSKATDLGARR 504

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           TTF      D   +  AMIEKEP+T+V+S +GWIR+LK H+ D +AL FKEGD L  A H
Sbjct: 505 TTFETAMEVDLDAVAAAMIEKEPVTIVVSQKGWIRALKGHAPDFAALTFKEGDKLLTAFH 564

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+ +T GK YTL A  L  GRGHGE +++++D++++ DI++ F++    K ++
Sbjct: 565 AETTDKLLMFTTAGKFYTLAADKLPGGRGHGEPVRIMVDMDNDADILSLFIHKPGRKRML 624

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGENRKLL 671
           VSS GN F+V E+++IANTRKGK  L V+   + KL          GDHVAVVGENRKLL
Sbjct: 625 VSSLGNGFVVAETDLIANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLL 684

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF +DQ+PEM RGKGVRLQ YKDGG+ D   FK+ +GL+W DSAGR++ R+ ++L  ++ 
Sbjct: 685 IFPLDQVPEMGRGKGVRLQRYKDGGVKDARLFKLADGLSWTDSAGRTHTRTADELKEYIA 744

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            R   G +VPKGFP+SG F
Sbjct: 745 DRAQAGRMVPKGFPKSGTF 763


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/740 (57%), Positives = 555/740 (75%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++  + ++L+ ALEERYL+YAL+TI  RA+PD+RDG KPVHRRI++ M  + LD    FK
Sbjct: 8   QDGPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGMRLLKLDPNQGFK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYP++ GQGNFGNIDGDSAAA RYTE
Sbjct: 68  KCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT VA  IL G++E+AVDFR+TY+  DSEPVV P  FPNLLANG++GIAVGMATSIP 
Sbjct: 128 ARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGSTGIAVGMATSIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C A   LI  P+  +E+LLE+I GPDFPTGG IV  + SI+E+Y+ GRG FR R
Sbjct: 188 HNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILEAYKTGRGSFRTR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  EE  RG++ IVVTEIPY VQKSRLIEKIAEL++A+++PLL+DIRDESAEDVR+VL
Sbjct: 248 AKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRVVL 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P+N+++DP+LLM S+F L+D+E RF LNMNVLS G VP+VM L  +L+EWL H++EVL 
Sbjct: 308 VPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVLQEWLEHQKEVLV 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS+ R+  I+ R+E+L+G L+AYLNIDE+I IIR ED  K  ++  F LTE Q +AILN
Sbjct: 368 RRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDDAKASLIKAFDLTEVQAEAILN 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++IK E D L  EK  +++LL S K+QWN+++ ++ E+ + +   T++G
Sbjct: 428 MRLRSLRKLEEFEIKKEHDKLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIG 487

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT F      D   + QAMIEKEPITVVIS +GWIR+LK H  D++ L FK+GD L +
Sbjct: 488 ARRTDFGTADDRDLEEINQAMIEKEPITVVISEKGWIRTLKGHVQDVTNLAFKQGDQLHL 547

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           + HA TT +IL+ ++ GK YTL A  L  GRGHGE I+L++D++  Q+I++AFV+D   K
Sbjct: 548 SFHAETTSKILIFTSGGKFYTLGADKLPGGRGHGEPIRLMLDMDETQEIISAFVHDPERK 607

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ +     F+V+E ++IANTRKGK  L V++  K  L V   GD+VAV+G NRKLL F
Sbjct: 608 LLMSTDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIGDYVAVIGHNRKLLTF 667

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + QI  M+RG+GVRLQ Y+DGGISD+  F   EGLTW D++GR + R+  ++  W G R
Sbjct: 668 PLAQIAVMTRGRGVRLQRYRDGGISDIKTFDSEEGLTWTDASGRIFKRTLEEMQDWRGDR 727

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G L P GFPR+ KF  S
Sbjct: 728 GQAGRLPPNGFPRTNKFDGS 747


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/731 (58%), Positives = 551/731 (75%), Gaps = 3/731 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ LD G+ FKKSAR+V
Sbjct: 14  INLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAMRQLKLDPGSGFKKSARVV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIG+ HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGN+DGD+AAA RYTEAR+T+V
Sbjct: 74  GDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNVDGDNAAAMRYTEARLTEV 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L G+DED VDFRDTY+ EDSEP V P  FP LLANG +GIAVGMATSIP HN  E+
Sbjct: 134 AAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAAGIAVGMATSIPPHNAAEL 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI +P    EKL+E++ GPDFPTGGIIVE R +++E+Y  GRGGFRVRARW  E
Sbjct: 194 CDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLEAYETGRGGFRVRARWEQE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ RG + IVVTEIPYQVQKS+L+EKIAEL+ A+++PLLED+RDESAE++R+VL PK R+
Sbjct: 254 ELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDVRDESAEEIRLVLVPKART 313

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +DP  LMES+F  +++E RFPLNMNVLS G+VP VM L G+L+ WL HR+ VL RRS+FR
Sbjct: 314 VDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVLRAWLEHRKVVLVRRSNFR 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I++R+E+L+G L AYLN+DE+I IIR ED+PKP ++ +F LT+NQ +AILN+RLRSL
Sbjct: 374 LDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPALIKKFKLTDNQAEAILNMRLRSL 433

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           RKLEE +I+ E   L AE++ + SL+ S  +QW ++A EI+EVK +F   T LG RRT F
Sbjct: 434 RKLEEMEIRGEHKELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTALGARRTKF 493

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +    +   + +AMIEKEP+TVV S +GWIR++K H    + + FKEGD+ +  LHA T
Sbjct: 494 SDAPAIEYVPM-EAMIEKEPVTVVCSKKGWIRTMKGHVGPDTEIKFKEGDAGRFLLHAET 552

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           TD++LL +TDG+ YTL    L  GRG+GE ++L+IDL+ + ++V  FV+    KL+V S 
Sbjct: 553 TDKVLLFATDGRFYTLDVTKLPGGRGNGEPVRLMIDLDESHEVVELFVHQPGRKLIVASH 612

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
           +GN FIV E E++A  R GK  L V+ +++      V G HVAV+G+NRKLLIF + ++ 
Sbjct: 613 EGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQGTHVAVIGDNRKLLIFPVKEVN 672

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RGKGVRLQ Y DGG++DV  F + EGLT  D +GR  N    DL  W+G R   G L
Sbjct: 673 EMTRGKGVRLQRYADGGLADVKTFNLKEGLTVYDKSGRQRNFP--DLKDWVGARAQAGRL 730

Query: 740 VPKGFPRSGKF 750
            PKGF    KF
Sbjct: 731 PPKGFTSERKF 741


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/731 (56%), Positives = 546/731 (74%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA+IV
Sbjct: 16  VQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSAKIV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARMT V
Sbjct: 76  GDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARMTDV 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN  E+
Sbjct: 136 ARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNAAEL 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI+ P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+W  E
Sbjct: 196 CDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAEAYTTGRGSFRTRAKWHQE 255

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +  RG+W + +TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ PK+R+
Sbjct: 256 DGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRVVIEPKSRA 315

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +DP+LLMES+F L+++E++ PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR S+R
Sbjct: 316 VDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRCSYR 375

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+RLRSL
Sbjct: 376 KGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDIQAEAILNMRLRSL 435

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           RKLEE++I++E  NL AE + I+++L S  +QW ++A ++R+V+E+F   T LG+RRT F
Sbjct: 436 RKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKRRTMF 495

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L FK  D L  A  A T
Sbjct: 496 ADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLTFKTDDKLGQAFFAET 555

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T ++LL +T+G+ Y L    L  GRGHGE I++ IDL+ +  IV  FV+    K LV S 
Sbjct: 556 TSKLLLFATNGRFYALDVAKLPGGRGHGEPIRMFIDLDQDAAIVALFVHTGGRKFLVASH 615

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G  FIV E + + NTRKGK  L V    + + V  V+GD VAV+GENRKLLIF++DQ+P
Sbjct: 616 DGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSGDSVAVIGENRKLLIFALDQVP 675

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RG+GVRLQ YKDGG+SD+  F   +G +W DSAGR ++ S  +L  W G R   G +
Sbjct: 676 EMARGRGVRLQKYKDGGLSDIATFTAKDGFSWRDSAGREFSASIKELAEWRGNRADAGRM 735

Query: 740 VPKGFPRSGKF 750
            PKGFP+S KF
Sbjct: 736 PPKGFPKSNKF 746


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/736 (55%), Positives = 553/736 (75%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAEAYSTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ PK
Sbjct: 253 SQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+LLMES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F LT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMRTFKLTDIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S K+QW ++  ++R+V+++F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T+F +    D A +++A +E+EP+T+V+S++GW+R+LK H  DLS+L FK+ D L     
Sbjct: 493 TSFADAPEHDLAAIEEAFVEREPVTIVVSDKGWVRTLKGHVADLSSLAFKQDDKLGTTFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT +++L +T+G+ Y+L    L  GRGHGE I++ IDL+ +  IV+ FV     + LV
Sbjct: 553 AETTSKLMLFATNGRFYSLEVAKLPGGRGHGEPIRMFIDLDQDAAIVSLFVSTGDRRFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E++ ++NTRKGK  L V   +E +   VV    D VAV+GENRK+L+F 
Sbjct: 613 ASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM++G+GVRLQ YKDGG+SD++ F    GLTW DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMAKGRGVRLQKYKDGGLSDIVAFNAKAGLTWRDSAGREFSATIKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ PK
Sbjct: 253 AQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIRNED+PKPV++  FSLT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPVLMKTFSLTDIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDRLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FVY    K L+
Sbjct: 553 AETTSKLLLLATNGRFYSLDVAKLPGGRGHGEPIRMFIDMEQDAAIVAVFVYKGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  FIV E + +  TRKGK  + V   +E +   VV    D VAV+GENRK+LIF 
Sbjct: 613 ASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL+W DSAGR ++ +  DL  W G R 
Sbjct: 673 MDQVPEMTRGRGVRLQKYKDGGLSDIATFVSKQGLSWRDSAGREFSATMKDLAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/745 (57%), Positives = 562/745 (75%), Gaps = 3/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   L    ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ 
Sbjct: 1   MADETILAPPPIEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAMRQLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD    FKK AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +A  +L G+DED VDFR+TY+ E+ EPVV P+ FPNLLANG+SGIAV
Sbjct: 121 AAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+C+AAL LI +P+ S+E LL Y+ GPDFPTGG++V+    +VE+YR 
Sbjct: 181 GMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RARW  E+ GRG + I+VTEIPY VQKSRLIEK+A+L+ AK++PLL DI DES
Sbjct: 241 GRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDIDDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIV+ PK+R++D  LLME +F L+++E R PLNM VLS G+VPQV+ L  +L+EWL
Sbjct: 301 AEDIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVLQEWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRR VL RRS  R++ ID R+E+L GLLIAYLN+DE+I IIRNED+PKP +++RF+LT+
Sbjct: 361 DHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPALIARFALTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I++E D L  E+E +  LL S + QW++I+ EI+ +K+ 
Sbjct: 421 VQAEAILNMRLRSLRKLEEIEIRAENDRLTTEREGLVELLGSDEMQWDRISAEIKGIKKQ 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K+T LG+R+T    +   D A +++A+I+KEP+TVV+S +GWIR+LK H  DL+ L F
Sbjct: 481 FGKATPLGKRKTVTAALPDIDVA-VEEALIDKEPVTVVLSEKGWIRALKGHDGDLAKLTF 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K  D LK+A+ A TTD+I+L +T+GK YTL A  L  GRG GE ++L+IDL+   +++  
Sbjct: 540 KTDDVLKVAIKAQTTDKIVLFATNGKFYTLEASELPGGRGQGEPVRLMIDLDEADELLET 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+    KL+V SS GN F+V E E++A TRKGK  L +   E+  L     GD VAVVG
Sbjct: 600 FVHKPGRKLVVASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRPAEGDAVAVVG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENR+LL+F + ++ E++RG+GVRLQ YKDGG++DV  F    GL   D++GR   R+  +
Sbjct: 660 ENRRLLVFPLAELNELTRGRGVRLQKYKDGGLADVQVFTAATGLKLSDTSGRV--RTVTE 717

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  + G R   GS VPKG+P+SG+F
Sbjct: 718 LDEFKGARAAAGSAVPKGWPKSGRF 742


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ PK
Sbjct: 253 MQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  A  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLNFKQDDKLDRAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYSLEVAKLPGGRGHGEPIRMFIDMEQDAAIVAMFVHKGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E + +  TRKGK  + V   +E +   VV    D+VAV+G+NRK+LIF 
Sbjct: 613 ASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD++ F   EGL+W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMARGRGVRLQKYKDGGLSDIVTFVAKEGLSWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G + PKGFP+S KF
Sbjct: 733 DAGRMPPKGFPKSNKF 748


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/731 (56%), Positives = 556/731 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKK A+IV
Sbjct: 20  VNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKCAKIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT++
Sbjct: 80  GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTEI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+G+DEDA+DFR+ Y+ +  EP+V P+  PNLLANG  GIAVGMATSIP HN+ E+
Sbjct: 140 ARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHNLSEL 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI + + + ++LL ++ GPDFPTGGI+V+S ESI E+YR GRG FR+RARW  E
Sbjct: 200 CDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRARWERE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  RG++ IVVTEIPY VQKSRLIEK+AEL+  K++PL+ DIRDESAEDVRIV+ PK+R+
Sbjct: 260 EGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAEDVRIVIEPKSRA 319

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++P+LLMES+F L+++ETRFP+NMNVL  G VP+V+ LD  L++WL HRREVL RRS  R
Sbjct: 320 VEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRRSRHR 379

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I+RR+E+L G+LI +LN+DE+I IIR ED+PK V+ + F+L++ Q + IL+ RLRSL
Sbjct: 380 LAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKEVLKATFTLSDIQANYILDTRLRSL 439

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           R+LEE +++ E +NL  EK +I+ LL S  +QW +I+ +IR++K+ + ++T LGRRRTTF
Sbjct: 440 RRLEEMELRREYENLEKEKSEIEGLLASESKQWKEISSQIRDLKKRYGEATPLGRRRTTF 499

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             V       +  A+IE+EP+T+V+S +GWIR+LK H  DLS L FK  D L     A T
Sbjct: 500 GNVPDVGAVDVATALIEREPVTIVVSEKGWIRALKGHVADLSTLTFKGDDQLAFQFFAET 559

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T +ILL ++DGK +TL A  L  GRGHGE ++L++DL   +++ +   Y++  KLL+ +S
Sbjct: 560 TSKILLFASDGKVFTLEASKLPGGRGHGEPLRLMVDLGEGEEVTSIIPYETGAKLLLTAS 619

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G  FIV + ++I  TRKGK  L   +  K+  +V   GDH+A++GENRKLLIF + QI 
Sbjct: 620 DGRGFIVGQDDLIGTTRKGKQVLNCDAPAKLSHIVPAAGDHLAIIGENRKLLIFPLVQIA 679

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RGKGVRLQ YKDGG+SD     I  GL+W D+AGRS++ ++ DL  W+G+RG  G L
Sbjct: 680 EMTRGKGVRLQKYKDGGVSDAKVIFIDAGLSWQDAAGRSFHLAKADLADWIGQRGEAGRL 739

Query: 740 VPKGFPRSGKF 750
            P+GFP++ +F
Sbjct: 740 PPRGFPKNNRF 750


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF 
Sbjct: 613 ASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D +AV+G+NRK++IF 
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/735 (57%), Positives = 549/735 (74%), Gaps = 3/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ + L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  F+KS
Sbjct: 12  TIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGGGFRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHG+ ++YD++VRLAQ F QRYPL+ GQGNFGNIDGD+AAA RYTEAR
Sbjct: 72  AKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNIDGDNAAAERYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA LIL G+DEDAVDFR  Y+    EPVV P  FPNLLANG++GIAVGMATSIP HN
Sbjct: 132 LTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGSTGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A+L LIDNP+ + + LL+++ GPDFPTGG+++ES  SI ++Y  GRGGFR+RAR
Sbjct: 192 AAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIADAYATGRGGFRLRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE GRG++ +VVTEIPY V KSRL+EKIA+L+  K++PLL D+RDESAEDVR+VL P
Sbjct: 252 WHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADVRDESAEDVRLVLEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           + R++D +L+MES+F L+++ETRFPLNMNVL  G+VP+V+ L   L+EW+ HRREVL RR
Sbjct: 312 RARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEALREWVDHRREVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R++ I+ R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 372 SRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDVQAEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE++I+ E D L  EK+ I+ LL S  +QW  +A E+ E ++IF   T LGRR
Sbjct: 432 LRSLRKLEEFEIRKEHDALSKEKDGIEKLLGSEARQWKTVAWELGETRKIFGPDTPLGRR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F E +  D   + +A++E+EPITVV+S +GWIR+LK H  DLSAL FK  D L+I+ 
Sbjct: 492 RTGFGEAAAHDADAVSEALVEREPITVVVSEKGWIRALKGHVADLSALAFKGDDELRISF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              TT ++L+ +T+G+ YTL A  L  GRGHGE ++L I+L    DIV    Y    KLL
Sbjct: 552 FTETTAKLLVFATNGRFYTLDASKLPGGRGHGEPLRLSIELEQEADIVDVLPYQGGRKLL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V + +G  F+V E E +ANTRKGK  L V  ++ +K V+   GD VAV+GENRKLL+F +
Sbjct: 612 VAAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVK-VIPAIGDSVAVIGENRKLLVFPL 670

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            QIPEM+RG+GVRLQ YKDG +SDV  F   +GLTW D++GR++  +  DL  W G+R  
Sbjct: 671 SQIPEMTRGRGVRLQRYKDGQMSDVKVFSAADGLTWTDTSGRTW--TVTDLTEWRGERAA 728

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFPR+ +F
Sbjct: 729 AGRLPPKGFPRNNRF 743


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/734 (57%), Positives = 552/734 (75%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V  R ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AM E+ L+    + K A
Sbjct: 13  IEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMRELRLNPEGGYIKCA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+G  HPHG+Q++YD+L RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARM
Sbjct: 73  KIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNIDGDNPAAERYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A LIL+G+DED V+FR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HNV
Sbjct: 133 TETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASGIAVGMATNIPPHNV 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C A L LI +P  +IEKL+E + GPDFPTGG+IVE R++I+E+Y+ GRGGFRVRARW
Sbjct: 193 DELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEAYKTGRGGFRVRARW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG + IVVTEIPY VQK++L+EKIAEL+  K++P L D+RDESAE++R+VL PK
Sbjct: 253 SKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVRDESAEEIRLVLEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +DP LLMES+F  S++E R  LNMNVLS G+VP V+ L  +L +WL HR EVL RRS
Sbjct: 313 TRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLWQWLEHRIEVLVRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R++ I+ R+E+L G LIAYLNIDE+I IIR ED PK  ++++F L++ Q +AILNLRL
Sbjct: 373 THRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKAKLIAKFKLSDVQAEAILNLRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSL +LEE +I+SE D L  E+ ++  LL S + QW  ++ E++  +E +SK T +GRRR
Sbjct: 433 RSLSRLEEVEIRSEHDKLSKERRELKQLLKSEELQWEHVSNEVKTTREAYSKKTAIGRRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +TF +    +   L  A++EKEP+TV++S +GW+R+LK H  DLS L FK+GD+LK A+ 
Sbjct: 493 STFADAPEVE-VDLATALVEKEPVTVILSEKGWVRTLKGHQDDLSKLDFKQGDALKRAIK 551

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD+++LL+T+GK +TL A  L  GRGHGE ++L+IDL  N DIV  FV+D + KLLV
Sbjct: 552 ALTTDKLVLLTTNGKFFTLEANALPGGRGHGEPVRLMIDLEENHDIVEVFVHDPSRKLLV 611

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S+ G  FIV E E+IA+TRKGK  L VS  ++ ++ V   GD+VA VG+NRKLL+F ID
Sbjct: 612 ASTAGYGFIVPEEEVIASTRKGKQVLNVSEPDEARVCVPAEGDYVATVGDNRKLLVFKID 671

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           ++ EM+RGKGV LQ +KDG +SDV  FK  +GLTW+DSAGR +  +  ++  W+G+R   
Sbjct: 672 EVNEMTRGKGVILQRFKDGSLSDVRVFKKSDGLTWVDSAGREFTLAWGEMRDWVGERAQA 731

Query: 737 GSLVPKGFPRSGKF 750
           G +VP+GFPRS  F
Sbjct: 732 GRVVPRGFPRSNSF 745


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/736 (57%), Positives = 542/736 (73%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 AQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEALREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 NHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++IK E  +L AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIKKEDKDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF 
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SDV  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDVATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/734 (56%), Positives = 541/734 (73%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRVRARW
Sbjct: 193 AELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRARW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLIRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           TTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L  A  
Sbjct: 493 TTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGFAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     K LV
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + +  T+KGK  L V    + + V +V GD VAV+GENRK+L+F +D
Sbjct: 613 ASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAVIGENRKMLVFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           QIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W G R   
Sbjct: 673 QIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQGTRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L PKGFP+S KF
Sbjct: 733 GRLPPKGFPKSNKF 746


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/735 (56%), Positives = 544/735 (74%), Gaps = 2/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V+L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ LD G  FKKS
Sbjct: 12  HIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRLDPGQGFKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEAR
Sbjct: 72  ARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ A L+L G+DEDAVDFR TY+  + EP V P+ FPNLLANG+ GIAVGMATSIP HN
Sbjct: 132 LTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +AAL LID+PE     LL+++ GPDFPTGG++VE    + E+Y  GRG FRVRAR
Sbjct: 192 AAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAEAYATGRGSFRVRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESAED+R+VL P
Sbjct: 252 WEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVLEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           + R++D ++LMES+F L+++E R PLNMNVL  G+VP+V+ L   L+EWL HRR+VL RR
Sbjct: 312 RARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEALREWLDHRRDVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S +R++ I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 372 SRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKQELMRTFELTDVQTEAILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L  E++ ++ L+ S   QW  IA EIRE ++ +   T +GRR
Sbjct: 432 LRSLRRLEEMEIRKEHDALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTYGPETAIGRR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTTF       +    +A++E+EP+T+V+S +GWIR+LK H  DLS L FK  DSL  A 
Sbjct: 492 RTTFAAPPTFHEDAFTEALVEREPVTIVVSAKGWIRALKGHVQDLSNLQFKGDDSLGHAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT ++++ +++G+ YTL A  L  GRGHGE ++L+IDL    +IV+ F Y    KLL
Sbjct: 552 FAETTSKVMVFASNGRFYTLEAAKLPGGRGHGEPVRLMIDLEQEAEIVSVFAYQPGRKLL 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S +G  F+V E + +ANTRKGK  L     +    V  V GD VAV+G+NRKLL+F +
Sbjct: 612 LASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFVEGDWVAVIGDNRKLLLFPL 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +Q+PEM+RG+GVR Q Y++GG+SD+  F +  GLTW D++GR++  +E  LL W G+R  
Sbjct: 672 NQVPEMTRGRGVRFQRYREGGLSDLKAFSMASGLTWEDTSGRTWTVTE--LLEWQGERAS 729

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFPRS KF
Sbjct: 730 AGRLPPKGFPRSNKF 744


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/735 (56%), Positives = 540/735 (73%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             + V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKK 
Sbjct: 15  GTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGD AAAYRYTEAR
Sbjct: 75  AKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDGAAAYRYTEAR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DED+VDFRD Y+ +  EPVV PS  PNLLANG  GIAVGMATSIP HN
Sbjct: 135 MTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGAQGIAVGMATSIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+AAL L+ + + S ++LL +  GPDFPTGG++VES++SI E+YR GRG  R+RAR
Sbjct: 195 LAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIAETYRTGRGSLRLRAR 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE  RG+W IVVTEIPY VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ P
Sbjct: 255 WSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVADIRDESAEDVRVVIEP 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP LLME +F L+++ETRFP+N+NVL  G  P+V+     L++WL HRREVL RR
Sbjct: 315 KSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEALQQWLDHRREVLVRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I RR+E+L G+LI +LN+DE+I IIR ED+PK  +   FSL++ QV+ +L+ R
Sbjct: 375 ARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKERLQLAFSLSDMQVNYVLDTR 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE QI+ E + L  EK ++++LL    +QW +IA EIR++K+ +   T LGRR
Sbjct: 435 LRSLRRLEEMQIQREHEALEKEKLELEALLADEARQWKKIAAEIRDLKKKYGPETKLGRR 494

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT+F E     +     AM+E+EP+TVV+S +GWIR+LK    DLS L FK  DSL I+ 
Sbjct: 495 RTSFAEAPDVGEIDFASAMVEREPVTVVVSEKGWIRALKGQVADLSGLQFKGDDSLHISF 554

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TT +IL+LS DGK +TL AG L  GR  GE ++LL D+   + +   F Y    K+L
Sbjct: 555 FAETTSKILVLSGDGKIFTLDAGKLPGGRSQGEPLRLLADIGEGESVAAVFPYAPGQKML 614

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V +  G  F+V + E+I  TRKGK  L V      K++V   GDHVA++GENRKLL+F +
Sbjct: 615 VATDDGRGFVVSQDEMIGGTRKGKLLLNVEKPGIAKIIVPADGDHVAIIGENRKLLVFPL 674

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RGKGVRLQ Y+DGG++D   F I EGL+W DSAGR +  ++ +L  W+G R  
Sbjct: 675 DQVPEMARGKGVRLQKYRDGGVADAKVFSIVEGLSWKDSAGRVFVVAKPELAEWIGNRAE 734

Query: 736 VGSLVPKGFPRSGKF 750
            G L P+GFP++ +F
Sbjct: 735 AGRLPPRGFPKNNRF 749


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/736 (56%), Positives = 547/736 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  + FKK
Sbjct: 11  QDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGD+ AA RYTE+
Sbjct: 71  SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDNPAAMRYTES 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T VA L+L+G+DEDAV+FR TY+  D EPVV P  FPNLLANG  GIAVGMATSIP H
Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LID P      LL Y+ GPDFPTGGI+V+S++SI E+Y  GRGGFRVRA
Sbjct: 191 NAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAEAYATGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+RIV+ 
Sbjct: 251 KWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK++++DP++LME++F  +D+E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL R
Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLVR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+ILN+
Sbjct: 371 RSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIKTFKLTDIQADSILNM 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE +I+ E   L AE + + ++L S  +QW ++  ++++V+E+F   T LG+
Sbjct: 431 RLRNLRKLEEMEIRGEDKKLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKTALGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D A +++A+IE+EPITVV+S++GW+R+LK H  DLS L FK  D L I+
Sbjct: 491 RRTQFADAPEHDLAAIEEALIEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV     K 
Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S  G  F+V E + + NTRKGK  L V++  +   +  V GD VAV+GENRK+LIF 
Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNEAAAICTVAGDTVAVIGENRKMLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   EGLTW DSAGR ++ +  +L  W G R 
Sbjct: 671 LDQVPEMARGRGVRLQRYKDGGLSDITTFTAKEGLTWKDSAGREFSATWKELSDWRGNRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 731 DAGRLPPKGFPKSNKF 746


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/731 (56%), Positives = 539/731 (73%), Gaps = 1/731 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA+IV
Sbjct: 16  VQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSAKIV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARMT V
Sbjct: 76  GDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARMTDV 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN  E+
Sbjct: 136 ARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNAAEL 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LID P+ + + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W  E
Sbjct: 196 CDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITEAYMTGRGAFRTRAKWNQE 255

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK+R+
Sbjct: 256 EGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPKSRN 315

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RRS++R
Sbjct: 316 VDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRSAYR 375

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+RLRSL
Sbjct: 376 KAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRLRSL 435

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           RKLEE +I++E  NL AE + I+++L S  +QW ++A ++R V+++F   T LG+RRT F
Sbjct: 436 RKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRRTVF 495

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS+L FK  D L  A  A T
Sbjct: 496 ADAPEHDLAALEESLVEREPVTVVLSDKGWVRTLKGHVEDLSSLSFKTNDKLGFAFFAET 555

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T ++LL +T+GK Y+L    L  GRGHGE I+L ID+  +  IV+ FV     K L+ S 
Sbjct: 556 TSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDMEQDAAIVSLFVNTGGRKFLIASH 615

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
           +G  FIV E + +  TRKGK  L V    + K +V V GD VAV+G N K++IF +DQ+P
Sbjct: 616 EGQGFIVNEDDCVGTTRKGKQVLNVEMPNEAKAIVTVAGDQVAVIGTNHKMVIFPLDQVP 675

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR       DL  W G R   G L
Sbjct: 676 EMARGRGVRLQKYKDAGLSDVAVFDSKAGLTWKDSAGREQGLRWKDLSDWRGNRADAGRL 735

Query: 740 VPKGFPRSGKF 750
              G P+S +F
Sbjct: 736 A-HGLPKSNRF 745


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/736 (56%), Positives = 545/736 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V+ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  + FKK
Sbjct: 11  QDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTE+
Sbjct: 71  SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAMRYTES 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T VA L+L+G+DEDAV+FR +Y+  D EP V P  FPNLLANG  GIAVGMAT+IP H
Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQGIAVGMATAIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI  P    + LL Y+ GPDFPTGGI+V+ +ESI E+Y  GRG FRVRA
Sbjct: 191 NAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAEAYNTGRGAFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+RIV+ 
Sbjct: 251 KWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK++++DP++LME++F  +D+E+R PLN+NVL  GRVP+V+ L   L+EWL H R+VL R
Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECLREWLDHLRDVLVR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+ILN+
Sbjct: 371 RSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIRTFKLTDLQADSILNM 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE +I+ E  NL  E + I ++L S ++QW +++ ++++V+++F   T LG+
Sbjct: 431 RLRNLRKLEEMEIRGEDKNLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKTPLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F      D ATL++A +E+EPITVV+S++GW+R+LK H  DLS L FK  D L I+
Sbjct: 491 RRTQFANAPEHDLATLEEAFVEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV     K 
Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S  G  F+V E + + NTRKGK  + V+   ++  +  V GD VAV+GENRK+LIF 
Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNEVAAIATVEGDTVAVIGENRKMLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           ++Q+PEM+RG+GVRLQ YKDGG+SDV  F   EGLTW DSAGR ++ S  +L  W G R 
Sbjct: 671 LEQVPEMARGRGVRLQRYKDGGLSDVTTFTAKEGLTWRDSAGREFSASWKELSDWRGNRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 731 DAGRLPPKGFPKSNKF 746


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/731 (56%), Positives = 541/731 (74%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V LR ALEERYL YALSTI +RA+PD RDG KPVHRRI++ M  + LD GA FKK A+IV
Sbjct: 23  VDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPFKKCAKIV 82

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT V
Sbjct: 83  GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTSV 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+G+DEDA+DF+  Y+ E+ EP+V PS  PN+LANG  GIAVGMATSIP HN+ E+
Sbjct: 143 ARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIPPHNLAEL 202

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI +   + E+LL ++ GPDFPTGGIIV+ RE IVE+YR GRG FRVRARW  E
Sbjct: 203 CDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRVRARWTKE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ RG W  VVTEIPY VQKSRLIEK+AELI  +++PL+ D+RDESAEDVRIVL P++R+
Sbjct: 263 ELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAEDVRIVLEPRSRN 322

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D  L+ME++F LS++ETRF +NMNVL  G  P+V+ LD  L++WL HRREVL RRS  R
Sbjct: 323 IDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVLQRRSRHR 382

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           + AI RR+E L+G++I +LN+DE+I IIR ED  K  +   F LT+ QVD IL+ RLRSL
Sbjct: 383 LAAILRRIEQLEGMIIVFLNLDEVIRIIREEDDAKGELKKAFKLTDLQVDYILDTRLRSL 442

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           RKLEE +++ EL  L  E+  I++LL    +QW  IA ++RE+K+I+   T++G+RRTTF
Sbjct: 443 RKLEEMELRRELKELTDERADIEALLADDGRQWKTIAAQVRELKKIYGPQTEIGKRRTTF 502

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +   A    L +AMIE+EPITVV+S +GWIR+LK H  DLS L FK  D L  +  A T
Sbjct: 503 EDAPAAVDLDLAEAMIEREPITVVVSKKGWIRALKGHVQDLSTLQFKGDDELDTSFFAQT 562

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T +IL+L+T+GKAYTL A  L  GRGHGE I+L  D++ +  +     ++    LL+V+ 
Sbjct: 563 TSKILVLATNGKAYTLDASKLPGGRGHGEPIRLFADIDEDASVARVLPHEPQASLLLVAD 622

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G  F+V + +++++T+KG+  L V    ++K+V +  GDHVA++GENRKLL+F +++ P
Sbjct: 623 DGRGFVVAQDDLLSSTKKGRAVLNVEPPARLKVVTEAAGDHVAIIGENRKLLVFPLEEAP 682

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            M+RGKGVR+Q YKDGG++D   F + +GLTW DS+GR +   + +L  W+G R   G L
Sbjct: 683 RMARGKGVRMQRYKDGGVADAKVFSLADGLTWTDSSGRVFTVEKLELKEWIGHRAEAGRL 742

Query: 740 VPKGFPRSGKF 750
            P+GFPR+ +F
Sbjct: 743 PPRGFPRNNRF 753


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/734 (56%), Positives = 538/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA
Sbjct: 13  IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+     LL+++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAEAYATGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK
Sbjct: 253 HREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKP ++  F LTE Q +AILN+RL
Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPALIKAFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  +L AE + I+++L S  +QW ++  ++R V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV+    K L+
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + ++ TRKGK  L V    + K +  V GD VAV+G N K+++F +D
Sbjct: 613 ASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEAKAITTVAGDQVAVIGTNHKMVVFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR  + S  DL  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYKDAGLSDVAVFNSKIGLTWKDSAGREQSLSWKDLSDWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L   G P+S KF
Sbjct: 733 GRLA-HGLPKSNKF 745


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/734 (55%), Positives = 536/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL+++ GPDFPTGGII++S+ESI ++Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIADAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG+W IVVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK
Sbjct: 253 HREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDIRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q DAILN+RL
Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALIKAFKLTEVQADAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL AE + I+++L S  +QW ++  ++R V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFL 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV     K L+
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVNTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + +  TRKGK  L V    + K +  V GD VAV+G N K++IF +D
Sbjct: 613 ASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTNHKMVIFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y+D G+SDV  F    GLTW DSAGR    S  DL  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYRDAGLSDVAVFDSKTGLTWRDSAGREQGLSWKDLSDWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L   G P+S KF
Sbjct: 733 GRLA-HGLPKSNKF 745


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/734 (55%), Positives = 540/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIPY VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ PK
Sbjct: 253 KQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+RL
Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+ LL S + QW ++  +++ V+++F   T LGRRR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A  T ++LL +++GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K L+
Sbjct: 553 AENTSKVLLFASNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVSKGERKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+V+E + ++NTRKGK  L V++  + + +  V GD VAV+G N K+++F +D
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAITTVQGDQVAVIGTNHKMVVFGLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R   
Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G +  +G P+S KF
Sbjct: 733 GRIA-QGLPKSNKF 745


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/735 (55%), Positives = 544/735 (74%), Gaps = 2/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ LD G+ FKK 
Sbjct: 12  SVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLKLDPGSGFKKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEAR
Sbjct: 72  ARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ A L+L G+D+DAVDFR TY+  + EPVV P+ FPNLLANG+ GIAVGMATSIP HN
Sbjct: 132 LTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A+L L+++P      LL+++ GPDFPTGGI+VE      E+Y  GRG FRVRAR
Sbjct: 192 AAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAEAYATGRGAFRVRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESAED+R+VL P
Sbjct: 252 WHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVLEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           + R++D ++LMES+F L+++E+R  LNMNVL  G+VP+V+ L   L+EWL HRREVL RR
Sbjct: 312 RARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADALREWLDHRREVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+R
Sbjct: 372 SRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDLQAESILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +++ E   L  E+E+++ L+ S   QW  I  EIRE ++ +   T++GRR
Sbjct: 432 LRSLRRLEEMELRKEHAALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTYGPDTEIGRR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F       ++   +A++E+EPIT+V+S +GWIR+LK H  D++ + FK  D+L  A 
Sbjct: 492 RTDFAVPPDVHESAFTEALVEREPITIVMSAKGWIRALKGHVADVTGVPFKGDDTLAHAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           +A TT +I++LS++G+ +TL A  L  GRGHGE ++L+I+L    +IV+ F +    KL+
Sbjct: 552 YAETTSKIMVLSSNGRFFTLDAAKLPGGRGHGEPVRLMIELEQEAEIVSVFAHRPGGKLI 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S +G  F+V E + +ANTRKGK  L V + +   L V   GD VAV+G+NRKLL+F I
Sbjct: 612 VASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPADGDTVAVIGDNRKLLLFPI 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG+GVRLQ YK+GG+SD+  F   +GLTW DS+GR++  +E  LL W G+R  
Sbjct: 672 AQVPEMTRGRGVRLQRYKEGGLSDLKVFNRADGLTWEDSSGRTWTVTE--LLDWQGERAS 729

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFPR+ KF
Sbjct: 730 SGRLPPKGFPRNNKF 744


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/734 (54%), Positives = 539/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIP+ VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ PK
Sbjct: 253 KQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+RL
Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+ LL S   QW ++  +++ V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  +  
Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A  T ++LL +T+GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K LV
Sbjct: 553 AENTSKVLLFATNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVTKGERKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+V+E + ++NTRKGK  L V++  + + +  VTGD VAV+G N K+++F +D
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTGDQVAVIGTNHKMVVFGLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R   
Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G +  +G P+S KF
Sbjct: 733 GRIA-QGLPKSNKF 745


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/736 (54%), Positives = 537/736 (72%), Gaps = 1/736 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V LR ALEERYL YALSTI  RA+PD RDG KPVHRRI++ M  + L   A FKK
Sbjct: 15  EALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYGMQTLRLAPDAPFKK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGD+AAAYRYTEA
Sbjct: 75  CAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDAAAAYRYTEA 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA L+L+G+DEDA+DFR  Y+ E+ EPVV P+  PNLLANG  GIAVGMATS+P H
Sbjct: 135 RMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGAQGIAVGMATSVPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+AAL LI + E + E+L+ ++ GPDFPTGG++V+ R  IVE+YR GRG FR+RA
Sbjct: 195 NLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIVETYRTGRGSFRLRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  EE  RG W  VVTEIPY VQKSRLIEK+AELI+ K+ PL  D+RDESAEDVR+V+ 
Sbjct: 255 RWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGDVRDESAEDVRVVIE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+ R++DP L+ME++F LS++E RFP+NMNVL  G VP+V+ LD  L++WL HRREVL R
Sbjct: 315 PRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEALRQWLDHRREVLER 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+ AI RR+E+L G++I +LN+DE+I IIR ED+PK  + S F LT+ QVD IL+ 
Sbjct: 375 RSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQALKSAFDLTDVQVDYILDT 434

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LR+LEE +++ E + L+ E+ +I+ LL    +QW  I  +IRE+K+       L +
Sbjct: 435 RLRALRRLEEMELRKEREKLIEERAEIEGLLAEEAKQWKAITAQIRELKKTVGDPR-LAK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTTF +   A    L +A+IE+EPITVV+S +GWIR+LK H  DLS L FK  D+L  +
Sbjct: 494 RRTTFEDAPEATDIDLAEALIEREPITVVVSQKGWIRALKGHVSDLSQLQFKGDDALDFS 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++L L+++GKA+TL A  L  GRGHGE I+L+ +++ +  IV  F++     L
Sbjct: 554 FFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDAAIVKVFLHTPDALL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+VS  G  F+V +++++A TRKG+    V    K+K+V    GDHVA++GENRKLL+F 
Sbjct: 614 LLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAPAEGDHVAIIGENRKLLVFP 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + + P+M+RGKGVRLQ YKDGG++D   F + +GLTW D++ R +   + +L  W+  R 
Sbjct: 674 LSEAPQMARGKGVRLQRYKDGGVADAKVFALADGLTWTDTSARVHTVDKRELAEWVAHRA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G L P+GFP++ +F
Sbjct: 734 EAGRLPPRGFPKNNRF 749


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/735 (56%), Positives = 538/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD   AFKK 
Sbjct: 13  GIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPNTAFKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEAR
Sbjct: 73  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA L+L G+DEDAVDFR +YN E  EPVV P  FPNLLANG+ GIAVGMATSIP HN
Sbjct: 133 LTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQGIAVGMATSIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI +P  + E+L  ++ GPDFPTGGI+V+S E+I E+YR GRG FRVRAR
Sbjct: 193 AAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAEAYRTGRGAFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E++GRG+W +VVTEIPY V K+RLIEK+AEL+  +++PLL D+RDESAEDVRIVL P
Sbjct: 253 WTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADVRDESAEDVRIVLEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L   L+EWL HRR VL RR
Sbjct: 313 RSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEALREWLDHRRTVLQRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I++R+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q +AIL+ R
Sbjct: 373 SRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRYFQLTEVQANAILDTR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE ++K E   L AEK  +D+LL S   QW  IA ++R VK+ F   T LGRR
Sbjct: 433 LRSLRKLEEMELKREQAALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGPETPLGRR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT           L +AMIE+EPITV++S +GWIRSLK H  DLS + FK  D+LK++ 
Sbjct: 493 RTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRSLKGHVADLSGVQFKGDDALKLSF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              TT ++L+L+++GK +TL A  L  GRG G+ I+L+ DL+   DIVT + Y +  KLL
Sbjct: 553 PTETTAKLLVLASNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGTDIVTVWPYRAGAKLL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
             +  G  F      ++ANTRKGK  + +     +   V+V  GDHVA  GENR L++F 
Sbjct: 613 FGTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGENRLLVVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM+RGKGVRLQ Y++  ++ +  FK+ EGLTW DSAGR+ +    +L  W+G RG
Sbjct: 673 LTEIPEMARGKGVRLQRYRESTLAYLTVFKLAEGLTWPDSAGRTRSVVGEELAKWVGHRG 732

Query: 735 GVGSLVPKGFPRSGK 749
            VG + P+GFPRS +
Sbjct: 733 TVGIMAPRGFPRSNR 747


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/736 (55%), Positives = 539/736 (73%), Gaps = 1/736 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++AM  + LD G A KK
Sbjct: 12  DGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAMRMLRLDPGTAHKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGD +VYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+ AA RYTE 
Sbjct: 72  CARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNPAAQRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+VA L+L G++EDAVDFR  Y+ ++ EPVV P+ FPNLLANG  GIAVGMATSIP H
Sbjct: 132 RMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI +P  +  +L  ++ GPDFPTGG++++S E+I E+YR GRG FRVRA
Sbjct: 192 NAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAEAYRTGRGAFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG W +VVTEIPY V K+RLIEK+AEL+  K++PLL D+RDESAEDVRIVL 
Sbjct: 252 RWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADVRDESAEDVRIVLE 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L  +L+EWL HRR VL R
Sbjct: 312 PRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVLREWLDHRRTVLQR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q +AIL+ 
Sbjct: 372 RSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRHFQLTEVQANAILDT 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E   L AEK  +D+LL+S   QW  IA ++R VK+ F   T LGR
Sbjct: 432 RLRSLRKLEEMELKREQAALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGPETALGR 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT           L +AMIE+EPITV++S +GWIR+LK H  DLS + FK  D+LK++
Sbjct: 492 RRTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRALKGHVADLSTVQFKGDDALKLS 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               TT ++L+L+T+GK +TL A  L  GRG G+ I+L+ DL+   DIVT F + +  KL
Sbjct: 552 FPTETTAKLLVLATNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGSDIVTVFPFRAGAKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           L  +S G  F      ++ANTRKGK  + +     +   V+   GDHVAV GENR L++F
Sbjct: 612 LFGTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +IP+M+RGKGVRLQ Y++  ++ +  F++ EGL+W DSAGR+      +L  W+G R
Sbjct: 672 PLTEIPDMARGKGVRLQRYRESTLAYLSVFRLAEGLSWPDSAGRTRTVVGEELAKWVGHR 731

Query: 734 GGVGSLVPKGFPRSGK 749
           G VG++ P+GFPRS +
Sbjct: 732 GTVGAMAPRGFPRSNR 747


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/736 (54%), Positives = 528/736 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD   A KK
Sbjct: 11  DGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPTTAHKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++PE +  +L +++ GPDFPTGGI+++S ES+ E+YR GRG FRVRA
Sbjct: 191 NAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGRGAFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY + K RLIEK+AEL+  K++PLL D+RDESAEDVRIVL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAEDVRIVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++R++DP +LMES+F L+++E R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS +R+  IDRR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEIQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E D L AEK +ID+LL S   QW  I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFDALTAEKAEIDALLASEPAQWKAIQAQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              A++E+EPITV++S +GWIR+LK H  DLS + FK  D+LKIA
Sbjct: 491 RRTTLASPPDVGGIDFTAALVEREPITVIVSTKGWIRALKGHVADLSGVAFKGDDTLKIA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               TT +ILLL+T+GK +TL A  L  GRG G+ ++L+ DL+   +IV A  Y    KL
Sbjct: 551 FPTETTQKILLLATNGKVFTLEASKLPGGRGFGDPVRLMADLDDGTEIVAALPYRPETKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+  S G  F+     ++ANTRKGK  L +  +    ++V   GDHVAVV   + LLIF 
Sbjct: 611 LIAGSDGRGFVAPADALVANTRKGKNVLGLDGDATAAVLVPADGDHVAVVNTEKLLLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + ++ E++RGKGVRLQ  + G + D   FK+ +GL W D +      + + L  WLG R 
Sbjct: 671 VSEVAELARGKGVRLQRCRSGSLLDAHVFKLADGLPWQDGSAEGRLANVSVLEKWLGHRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
            VG ++ + FP+  +F
Sbjct: 731 EVGLMMARSFPKFERF 746


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +TL A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTLEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/740 (54%), Positives = 533/740 (72%), Gaps = 8/740 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI--SGQGNFGNIDGDSAAAYR-YTE 133
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+   GQGNFGNIDGD+ AAY  +  
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFGNIDGDNPAAYPLHRS 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A +T VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP 
Sbjct: 133 AHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRVR
Sbjct: 193 HNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV+
Sbjct: 253 ARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVI 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL 
Sbjct: 313 EPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLI 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN
Sbjct: 373 RRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T LG
Sbjct: 433 MRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L  
Sbjct: 493 KRRTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGF 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     K
Sbjct: 553 AFFAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR---KL 670
            LV S +G  F+V E + +  T+KGK  L V    + + V +V GD VA  G  R   K+
Sbjct: 613 FLVASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVA--GHRRETAKM 670

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F +DQIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W 
Sbjct: 671 LVFPLDQIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQ 730

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G R   G L PKGFP+S KF
Sbjct: 731 GTRADAGRLPPKGFPKSNKF 750


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LG+
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/734 (54%), Positives = 534/734 (72%), Gaps = 4/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD  A FKK A
Sbjct: 14  VRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAMHQLRLDPAAGFKKCA 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+
Sbjct: 74  RIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARL 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A+ +L+G++E+AVDFR TY+ E+ EP+V P+ FPNLLANG +GIAVGMATSIP HN 
Sbjct: 134 TEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAAGIAVGMATSIPPHNA 193

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C AAL LIDNP+  +++LL  + GPDFPTGG++VES E+I E+Y  GRGGFR+RARW
Sbjct: 194 GELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIREAYATGRGGFRIRARW 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E++  G+W I+VTEIPYQV KSRLIE+IA+L+  K++PLL D+RDES + VRIVL PK
Sbjct: 254 AEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADVRDESTDVVRIVLEPK 313

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R+++P +LME++F  + +E RFPLNMNVL   R P+VM L  +L+ WL HR  VL RRS
Sbjct: 314 SRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVLRCWLDHRHVVLVRRS 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+ AI RR+EIL+G LI YLN+DE+I IIR ED PKP +++RF+LTE Q +AILN+RL
Sbjct: 374 EHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPALMARFALTETQAEAILNMRL 433

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I+ E   L AE++ + +LL S  ++W +IA EI   +  F + T+LGRRR
Sbjct: 434 RSLRKLEEMEIRKEHKKLSAEQKSLQALLGSEGKRWKRIAEEIAATRARFGEETELGRRR 493

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +T  + + A     ++A +E+E ITV++S +GWIR++K H    +   FKEGD L+ ALH
Sbjct: 494 STL-DAAPAAVVIDERAFVEREMITVILSEKGWIRAVKGHLPPETEHKFKEGDRLRAALH 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTDRI L +T+GK +TL A  +  GRG G+ ++L++DL +  ++V+ FV+    K LV
Sbjct: 553 AETTDRICLFATNGKCFTLKADAIPRGRGDGQPVRLMVDLTNEDEVVSLFVWRPERKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+V+  ++ A  R GK  L V S  +   ++   GD VA++GENRKLL+F ++
Sbjct: 613 AASDGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAARLIPAEGDTVAIIGENRKLLVFPLE 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM RG+GV LQ YKDGG++DV  F   EGLTW    G    R E DL  W G R G 
Sbjct: 673 QVPEMVRGRGVTLQGYKDGGMADVKVFSAREGLTW--KIGERV-RMETDLTTWRGNRAGA 729

Query: 737 GSLVPKGFPRSGKF 750
           G   P GFP++ +F
Sbjct: 730 GRQPPNGFPKTNRF 743


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/736 (54%), Positives = 531/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S + I E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP LLMES+F LS++E R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L  EKE I++LL S K QW +I  +IR VK+ F   T LG+
Sbjct: 431 RLRSLRKLEEMELKREFEALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK++
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +       L+V   GDH+AV   ++ +L+F 
Sbjct: 611 LVAGSDGRGFIAPSDALVANTRKGKAILGLDEGTSATLLVPAEGDHIAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+SRGKGVRLQ  +   ++D   F + +GL W D +G++       L  ++G R 
Sbjct: 671 ASEVTELSRGKGVRLQRCRQSRLTDACVFTLADGLPWRDGSGQARLYQVAMLEKFMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGALMTRSFPKFERF 746


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/727 (55%), Positives = 531/727 (73%), Gaps = 4/727 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYLAYALSTI  R++PD+RDG KPVHRR++ AM ++ LD G+ FKKSAR+VG+V+G
Sbjct: 20  ALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLRLDPGSGFKKSARVVGDVMG 79

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA L+L
Sbjct: 80  KFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTEARLTEVAALLL 139

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DED VDFR TY+ E  EPVV PS FPNLLANG  GIAVGMATSIP HNV E+C A  
Sbjct: 140 DGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAVGMATSIPPHNVDELCTALQ 199

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI +PE   E L+E + GPD PTGG++VE+RES++E+YR GRG FRVRA+W VE +  G
Sbjct: 200 HLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRTGRGSFRVRAKWEVEPLKNG 259

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           +W IVVTEIPYQVQKSRL+E++AEL+  +++ LL+DIRDESA D+R+VL PK+R++DPD+
Sbjct: 260 TWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDESAMDIRLVLEPKSRNVDPDV 319

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F  +D+E+R  LN+NVL    VP+VM L   L+ +L HR++VL RR+  R++ I 
Sbjct: 320 LMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAFLDHRQDVLVRRTRHRLEKIA 379

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+E+L G LIAYLN+DEII I+R ED+PK VM+  F L++ Q +AILN+RLR+LR+LEE
Sbjct: 380 HRLEVLGGYLIAYLNLDEIIRIVREEDEPKAVMMRTFELSDVQAEAILNMRLRALRRLEE 439

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E +NL AE++ + +LLN   +QW  ++ ++ E++  F K+T++GRRRT       
Sbjct: 440 IEIRKEFENLSAERDDLTALLNDDARQWRAVSDQLGEIRRGFGKTTEIGRRRTVIGSTPN 499

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
                  +A++E+EPITV+ S +GWIR+LK H      + +KEGD  +  LHA TTD+IL
Sbjct: 500 P-VVVPTEALVEREPITVICSEKGWIRALKGHIGLDQEVKYKEGDGERFRLHAETTDKIL 558

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +TDG+ YT+    L SGRGHGE ++L+IDL +++D+V    Y +  +LLV SS+G  F
Sbjct: 559 VFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLANDEDVVAIRPYRTGDRLLVASSEGRGF 618

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +V   +++A TR GK  L V S  +  + V V GD VAVVG NRKLL+F    IPEM RG
Sbjct: 619 VVPVDDVVAQTRAGKQVLVVDSGARANICVTVAGDTVAVVGTNRKLLVFDAADIPEMVRG 678

Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           KGV LQ YK GG ++D + FK  +GL+W+   GR   R+E DL  W GKR G G   P G
Sbjct: 679 KGVILQKYKPGGHLADAVVFKAEDGLSWVLQGGR--RRTEPDLGVWRGKRAGAGKNPPTG 736

Query: 744 FPRSGKF 750
           FPR  +F
Sbjct: 737 FPRPPRF 743


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/770 (53%), Positives = 544/770 (70%), Gaps = 29/770 (3%)

Query: 6   ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+  T    NV  +S  LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDDTTDENLNVPDLSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT  AE +L+G+ E+AVDFR+ Y+   +EPVV P+ FPNLLANG+SGI
Sbjct: 121 DNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+CEA L LI  P+   + LL ++ GPDFPTGG IVE +E+I E+Y
Sbjct: 181 AVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIA+LI  K+IP+L DIRD
Sbjct: 241 RTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVRIVL P++++++PD+LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESAEDVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----- 418
           +L HRR+VL RRS+ RM+ ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMREDWG 420

Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                LTE Q +AILN+RLRSLR+LEE ++K E D L+ E+  +
Sbjct: 421 RTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERDALMEERAGL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           D LLNS + QW+ IA +IRE K+ F K    G RR+ F E    ++  L +AMI++EPIT
Sbjct: 481 DDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPL-EAMIDREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           VV S  GWIR++  H +DL+  L FK+GD  +   HA TTDR+L   ++G+ YT+ A NL
Sbjct: 540 VVCSEMGWIRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDRLLAFGSNGRFYTVSAANL 598

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +   +V  F++ S  KLLV SS G+ F+V E +++A TR GK 
Sbjct: 599 PGGRGMGEPLRLIVDLPNEAGLVDLFIHKSGRKLLVASSAGDGFVVPEDDVVAQTRSGKQ 658

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L V  + +  +   VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SDV
Sbjct: 659 VLNVRGDNRALVCKPVTGDSVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGMSDV 718

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F + +GL+W+D AGR+  R+E +L  W GKR G G + P+GFPR  +F
Sbjct: 719 ATFTMADGLSWLDPAGRT--RTEVELAEWTGKRAGSGRMAPRGFPRDNRF 766


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/737 (53%), Positives = 534/737 (72%), Gaps = 7/737 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++   +  L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L    AF+
Sbjct: 17  QDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLSPTGAFR 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+I G+V+G  HPHGD ++YD++ RLAQPF  RYPL+ GQGNFGNIDGD+ AA RYTE
Sbjct: 77  KSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGNFGNIDGDNPAASRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  AE +++G+ E+AVDFR  Y+    EP+V P+ FPNLL NG SGIAVGMAT++P 
Sbjct: 137 ARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLCNGASGIAVGMATNVPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L LI  P+   + L+  + GPDFPTGG++VESRE+I E+YR GRG  R+R
Sbjct: 197 HNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRETIAEAYRTGRGSLRLR 256

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW VE++GRG W IVVTEIPYQVQKS+LIE++AE+I  K++P+L D+RDESAED+RIVL
Sbjct: 257 ARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPILADVRDESAEDIRIVL 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P+ R++D + LM ++F +SD+E RF LNMNVL  GRVP+V  L  +L+ +L HRREVL 
Sbjct: 317 EPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSLKEVLRAFLDHRREVLV 376

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS+ R+  I  R+E+L+G +IA+LN+D +I IIR+ED PK VM++ F L++ QV+AILN
Sbjct: 377 RRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAVMIAEFKLSDVQVEAILN 436

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+LR+LEE ++++E +NL  E+E + ++L     QW +IA E+RE +  F KS   G
Sbjct: 437 MRLRALRRLEEIELRAEHENLTREREGLAAMLADEGAQWARIAEELRETRAKFGKSASGG 496

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRT   E     +  +  AMIE+EPITV++S  GWIR++K H    + + FK+GD   +
Sbjct: 497 QRRTEIGEAGEVAEIDM-DAMIEREPITVILSKMGWIRAMKGHQPLDAEVKFKDGDGPFM 555

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           ALHA TTD++++ + +G+ YTLPA NL  GRG GE ++L+IDL ++  ++  F +    +
Sbjct: 556 ALHAETTDKLMVFAANGRFYTLPANNLPGGRGMGEPLRLMIDLPNDAAVIDMFPWRDGER 615

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            LV S  G+ F+V  ++I+A TR GK  L   +     L  +VTGDHVAVVG+NRKLL+F
Sbjct: 616 YLVASKAGDGFVVAGADILAQTRAGKQVLNGEA----ALCRRVTGDHVAVVGQNRKLLVF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + ++PEM+RGKGVRLQ YKDGG+SD +C  + EGL W ++ GR+  RSE DL  WLGKR
Sbjct: 672 PLSELPEMARGKGVRLQKYKDGGLSDAVCITLAEGLRWQETGGRT--RSEPDLTEWLGKR 729

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G + P+GFPR  +F
Sbjct: 730 AGAGYMAPRGFPRDNRF 746


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/730 (53%), Positives = 539/730 (73%), Gaps = 5/730 (0%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM  + L     F KSA+I G+
Sbjct: 22  LRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMYRLKLVSNGKFLKSAKISGD 81

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYP++ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 82  TMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGNIDGDNPAAARYTEARMTAVAE 141

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L G++E+AVDF+D Y+   +EP V P+ FPNLLANG++GIAVGMAT+IP HN+ E+ +
Sbjct: 142 AMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGSTGIAVGMATNIPPHNIGELLD 201

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A++ LI  P    E LL+++ GPDFPTGGI+VE R+S++E+YR GRG  R+R++W +E++
Sbjct: 202 ASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLLETYRTGRGPMRLRSKWEIEDL 261

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            RG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESAED+R+VL P+ +++D
Sbjct: 262 PRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILADVRDESAEDIRLVLEPRAKTVD 321

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +LME++F +SD+E RF LN+N L  GR P+V  +  +L+ ++ H+R+VL RRS  RM 
Sbjct: 322 PTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKEVLRAFIDHKRDVLLRRSKHRMD 381

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            ID R+E+L+G ++A+LN+D +I IIRNED+PK +M+  FSL++ QV+AILN+RLRSLRK
Sbjct: 382 KIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKKIMMKEFSLSDVQVEAILNMRLRSLRK 441

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LEE ++++ELD+L  E+  +D LL S K QW +I  E+RE +++F K++D G RRT   E
Sbjct: 442 LEEIELRTELDSLQLERADLDDLLASEKMQWERIINELRETRKVFGKNSDSGNRRTELAE 501

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIALHAHTT 560
               ++  + +AMIEKEPITVV S+ GW+R++K H VDLS  L +K+GD  +   HA TT
Sbjct: 502 APDFEEVPI-EAMIEKEPITVVCSSMGWLRAMKGH-VDLSQELKYKDGDEKRFVFHAETT 559

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D++L+   +G+ YT+    L  GRG GE I+L++DL ++ ++V  F++    KLL+ SS 
Sbjct: 560 DKLLMFGGNGRFYTMSCSELPGGRGMGEPIRLIVDLPNDANMVDLFIHQPDRKLLLASSA 619

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           G+ F+VEE++I+A TR GK  L V  +    +   V GD+VA VG+NRK+LIF ID++P 
Sbjct: 620 GDGFVVEENDIVAQTRTGKQALNVKGDITALICKPVVGDYVATVGQNRKVLIFPIDELPV 679

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           MSRGKGVR+Q YKDGG++D   F   +GL+W+D AGR   R E +L  W+GKR G G + 
Sbjct: 680 MSRGKGVRMQKYKDGGLNDATTFHFIDGLSWLDPAGR--RRIETELADWIGKRAGAGRMA 737

Query: 741 PKGFPRSGKF 750
           P+GFPR  KF
Sbjct: 738 PRGFPRENKF 747


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/739 (53%), Positives = 539/739 (72%), Gaps = 5/739 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V  +++  SL  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD    F
Sbjct: 6   VSGDIRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPEGGF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYT
Sbjct: 66  KKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++T VA  +++ +D+D VDFR TY+  + EPVV P+ FPNLLANG +GIAVGMAT+IP
Sbjct: 126 EAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAAGIAVGMATNIP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV EIC A   LI  P+  ++ L+ ++ GPDFPTGG++VES+ SI E+YR GRG FR+
Sbjct: 186 PHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHEAYRSGRGSFRL 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+W VE++  G + I+VTEIPYQVQKS++IEKIAEL+  K++PLL DIRDESAEDVR+V
Sbjct: 246 RAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADIRDESAEDVRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L P+NR+++ ++LME +F  +D+E R  LNMNVL    VP VM L  +L+ +L HR EVL
Sbjct: 306 LEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVLQAFLDHRMEVL 365

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS FR+  I+RR+E+L+G L+AYLN+DE+I IIR ED+PK VM+  F LTE Q +AIL
Sbjct: 366 ERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAVMMRTFGLTEVQTEAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N+RLRSLRKLEE++I+ E D L AEK  +++LL    ++W+ IA ++   ++ F   T L
Sbjct: 426 NMRLRSLRKLEEFEIRKEHDQLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGPGTPL 485

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RRT   +   A    + +A +E+EPIT+++S +GWIR++K H   L  + FKEGD LK
Sbjct: 486 GDRRTQLADAPSAVVVPI-EAFVEREPITLLLSEKGWIRAMKGHVDQLDGVKFKEGDQLK 544

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +AL A TTD++L+ ++DG+ YT+    L SGRG GE ++L+ID+ ++ +++  F +    
Sbjct: 545 LALKAETTDKLLVFTSDGRFYTIGGDKLPSGRGFGEPLRLMIDMANDAEVLCVFAHKPGR 604

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLL 671
           KLL+ SS G  FIVEE+E++A T+ GK  L +  E EK    +   GD VA++G+NRKLL
Sbjct: 605 KLLLSSSGGRGFIVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDNRKLL 664

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F  ++IP M+RG+GV LQ Y+DGG++D+  F + +GL+W  S  R+  R+E DL  WLG
Sbjct: 665 VFMAEEIPVMARGRGVLLQKYRDGGVADIKVFTLADGLSW-KSGERT--RTEQDLTPWLG 721

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KR  VG L P GFPR+ KF
Sbjct: 722 KRASVGRLPPTGFPRANKF 740


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/736 (54%), Positives = 540/736 (73%), Gaps = 8/736 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM  + LD G+ FKK A
Sbjct: 12  IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+
Sbjct: 72  RVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNAAAMRYTEARL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA  +++G+D+DAVDFR TY+ ED EPVV P+ FPNLLANG+SGIAVGMAT+IP HNV
Sbjct: 132 TAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHNV 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+CEA L LI  P    E LL ++ GPDFPTGG++ E  ++I E+YR GRG  R+RARW
Sbjct: 192 GELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRARW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E +  G + IV+TEIPYQ+QK++L+E+IAELI  +++P+L D+RDESA+D+R+VL P+
Sbjct: 252 EKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDESADDLRLVLEPR 311

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           NR++D + LME +F L+D+E RF LNMNVL    VP+V+ L   L  +L HR  VL RRS
Sbjct: 312 NRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVVLGRRS 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I+ R+E+L G LIAYLN+DE+I IIR ED+PKP +++ F L++ Q +AILN+RL
Sbjct: 372 RHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPALMAAFGLSDVQTEAILNMRL 431

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLR+LEE +I+ E D L AEK  +++LL      W  IA +IRE ++ F   T LGRRR
Sbjct: 432 RSLRRLEEMEIRREHDALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRR 491

Query: 497 TTFCEVSRADKATLQ--QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           T   E+  A  A +   +A++E+EPITV++S RGW+R++K H        FKEGD+L +A
Sbjct: 492 T---ELGSAPTAVIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKFKEGDALLLA 548

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           LHA TTD++L+L + G+ +TLPA  L  GRG GE ++L++DL ++ DIV+  V+D   +L
Sbjct: 549 LHAQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSLLVHDPARRL 608

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           ++ +S G  F+VEE +++A TR GK  + V + E+  L  +V GDHVAV+G+NRKLL+F 
Sbjct: 609 ILAASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRGDHVAVIGQNRKLLVFP 668

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+P ++RGKGV LQ YKDGGI+D+  F I +GLTW  S  R+  R+E+DL  WLG R 
Sbjct: 669 LTQVPVLARGKGVILQRYKDGGIADIKTFAIADGLTW-KSGERT--RTESDLTAWLGDRA 725

Query: 735 GVGSLVPKGFPRSGKF 750
           G+G L P+GFPR+  F
Sbjct: 726 GLGRLPPQGFPRTNSF 741


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/735 (53%), Positives = 521/735 (70%), Gaps = 6/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I AM ++ LD G+ FKK 
Sbjct: 8   NVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y++LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE+R
Sbjct: 68  ARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+G+DEDAVDFR TY+ ED+EPVV P  FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 LTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA+ LI +PE     LL+++ GPDFPTGG +VE R +++ +Y  GRG  RVRAR
Sbjct: 188 AAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W   ++  G+W IVVTEIPYQVQKSRLIE++A+L+  +++PLL DIRDES E VRIVL P
Sbjct: 248 WSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTERVRIVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DPD+LM S+F  +  E RF +NMNVL   R P+VM L  +L+ WL HR EVL RR
Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ AI RR+EIL+G L  +LN+DE+I IIR ED+PKP +++ F+LT+ Q +AILN+R
Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPALIAAFTLTDTQAEAILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E   L AE++ +D++L    ++W +I  EI    + F      G R
Sbjct: 428 LRSLRKLEEMEIRKEHKALTAERKALDAMLADPAKRWARIETEIEATAKTFGGGP--GAR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT        +  + +A++E+EP+TV++S +GWIR+LK H+V  + L FKEGD LK  L
Sbjct: 486 RTTISGAVPVTEVAV-EALVEREPLTVILSEKGWIRALKGHAVAEAELKFKEGDRLKALL 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              + DR+ + +T+G+ Y+L A +L  GRG G+AI+L++DL +  ++   F+ D   + L
Sbjct: 545 RCSSLDRVTVFATNGRVYSLRAADLPRGRGDGQAIRLMVDLGNEDEVAALFIADPEARYL 604

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V  + G  FI+  +E+ A  R GK  L V   ++  L  KV GDH+AV+G+NRKLL+F +
Sbjct: 605 VAGTDGRGFIIAGAELGAEKRTGKQILTVRPGQEAMLCRKVAGDHLAVIGQNRKLLVFPL 664

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +Q+PEM+RG GV LQ YKDGG++D   F +  GL+W         R+E  L  WLG RG 
Sbjct: 665 EQVPEMARGAGVILQKYKDGGLADAKAFTLASGLSWRLG---DKQRTETRLAEWLGARGQ 721

Query: 736 VGSLVPKGFPRSGKF 750
            G L P GFPRSG F
Sbjct: 722 AGRLPPTGFPRSGTF 736


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/750 (53%), Positives = 531/750 (70%), Gaps = 11/750 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N      E++   S   AL ERYLAYALSTI  R++PD+RDG KPVHRR++ A
Sbjct: 1   MANDTYTNPG----EHIDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD G  FKKSAR+VG+V+GK HPHGD ++YD++VRLAQ F  RY L+ GQGNFGN
Sbjct: 57  MRQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L G+DED+VDFR TY+ E  EPV+ P+ FPNLLANG 
Sbjct: 117 IDGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HNV E+ +A+L LI +P  SI+ L++Y+ GPDFPTGG++VE  +SI 
Sbjct: 177 QGIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIR 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRGGFRVRARW +E+   G W IVVTEIPYQVQKSRLIE++AE++ AK++P+L D
Sbjct: 237 DAYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+R L+P+++MES+F LSD+ETR PLN+NVL     P VM L G 
Sbjct: 297 IRDESAEDLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  WLAHR+ VL RR+ FR+  I  R+E+L+G LI YLN+DE+IAIIR  + P+  +++R
Sbjct: 357 LNAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDALIAR 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE Q +AIL++RLRSLR+LEE  +++E DNL+AE+  + +LL +   QW +IA EI+
Sbjct: 417 FDLTETQANAILDMRLRSLRRLEEMALRTERDNLVAEQADLQNLLANEDLQWKKIATEIK 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ F+K     RRRTT  +    D     + ++E+EPIT++ S +GWIR++K H    
Sbjct: 477 DMKDSFAKHD---RRRTTLADAPEIDFDP-TEILVEREPITIICSAKGWIRAMKGHQELD 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S   FKEGD   + LHA TTD+ILL + +G+ YTL    L  GRG GE + LL DL  + 
Sbjct: 533 SEFKFKEGDGPGLVLHAETTDKILLFADNGRFYTLAGDRLPRGRGFGEPVSLLTDLPADI 592

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +I+T  +     K+LV +S G+  IV+    IA TR GK  L +  + +      V GD 
Sbjct: 593 EIIT-LLRGVAGKMLVAASTGHGLIVDMQSAIAQTRSGKQILNLPGDARAVACCMVDGDM 651

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA VG NRKLL F I ++PEM+RG+GV LQ +KDGG++DV  +   +GL+W    GR+  
Sbjct: 652 VASVGVNRKLLAFPISELPEMTRGRGVILQRFKDGGLADVTVYHSDKGLSWQAGGGRT-- 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+E D+  W+ KR G G L P GFPR  KF
Sbjct: 710 RTETDMSNWIAKRAGAGKLPPTGFPRPAKF 739


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/737 (53%), Positives = 527/737 (71%), Gaps = 13/737 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I+AM ++ LD  A FKK A
Sbjct: 11  VEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRLDPDAGFKKCA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD + Y++LVRLAQ F  RYPL+ GQGNFGNIDGD AAAYRYTEAR+
Sbjct: 71  RIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGAAAYRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA  +L+G+D+DAVD R TYN E+ EP V P+ FPNLLANG +GIAVGMATSIP HN 
Sbjct: 131 TEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVGMATSIPPHNA 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++C+AALALI+NP+     LL+++ GPDFPTGGI+VE R S++++Y  GRGGFRVRARW
Sbjct: 191 GQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETGRGGFRVRARW 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+   GSW I++TEIPYQVQK+RLIE++A L+  K++PLL DIRDES E VRIVL PK
Sbjct: 251 HKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDESTETVRIVLEPK 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++ PD+LME++F  + +E+RFPLNMNVL   R P+VM +  +L++WL HR EVL RRS
Sbjct: 311 SRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWLDHRHEVLIRRS 370

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+ +IDRR+EIL G L+ YLN+DE+I I+R ED+PK  +++ FSLT+ Q +++LN+RL
Sbjct: 371 THRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAALIAAFSLTDMQAESVLNMRL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I+ E   L  E++ +D+LL S   +W +IA E+  V++ F  S  LG RR
Sbjct: 431 RSLRKLEEMEIRREHAKLSKERKDLDALLKSEPLRWKRIAHEVAAVRDQFG-SGKLGDRR 489

Query: 497 TTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           T          AT++   +A +E+EPITV++S +GW+R+LK H  D   L FKEGD+L+ 
Sbjct: 490 TDIA----GPPATVEVAAEAFVEREPITVILSEKGWMRALKGHIADTVELRFKEGDALRF 545

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           AL   TTDR+ LL+T+GKAYTL A +L  GRG G+ ++LL    +  D++   V     +
Sbjct: 546 ALPCETTDRLCLLATNGKAYTLKAADLPRGRGDGQPVRLLAGFGNEDDVIALLVPKEEAR 605

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+VSS G  F++  ++++A  R G+  L V   E+    V   GDHVAV+ E+RKLL+F
Sbjct: 606 YLLVSSAGRGFVIRGADLLAEKRTGRQALNVKPGEEAAFCVPAEGDHVAVISESRKLLVF 665

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            ++Q+PEM+RG GV L   K G   D++   +  GL+W+        R E DL  WLG R
Sbjct: 666 PLEQVPEMARGAGVILN--KGGAPRDIMVLTLAHGLSWMSG---EKQRVERDLSYWLGAR 720

Query: 734 GGVGSLVPKGFPRSGKF 750
           G  G + P GFP+SG+F
Sbjct: 721 GQSGKVPPNGFPKSGRF 737


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/726 (53%), Positives = 524/726 (72%), Gaps = 2/726 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM E+ L+   AFKKSAR+VG+VIG
Sbjct: 20  ALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELKLNPDQAFKKSARVVGDVIG 79

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGDQSVY++LVRLAQ F  RYPL+ GQGNFGNIDGD AAA RYTEAR+T+ AEL+L
Sbjct: 80  KYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDGAAAMRYTEARLTKAAELLL 139

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           Q +D+  VDF +TY+  + EP+V P  FPNLLANG++GIAVGMATS+P HNV EIC AAL
Sbjct: 140 QDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAVGMATSVPPHNVAEICAAAL 199

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALID PE   E LL++I GPD PTGG IVE  E+I  +Y  GRGGFRVRA+W  E++GRG
Sbjct: 200 ALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYETGRGGFRVRAKWEKEDIGRG 259

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W IVVTEIPY VQKS+L+E+IA+L+ AK++PLL+D+ DES ED+R+VL PK++ +DPD+
Sbjct: 260 MWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDESTEDIRLVLEPKSKLVDPDM 319

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F L+D+ETR  LN+NVL    VP+VM L  +L+ WL HRREV  RR++ R+  ++
Sbjct: 320 LMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWLEHRREVAVRRATTRLAKVE 379

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+E+L G LI Y ++DE+I IIR ED+PK  +++ F LTE Q +AILN+RLR+LRKLEE
Sbjct: 380 DRLEVLAGYLIVYADLDEVIRIIRFEDEPKAKLMAHFELTERQAEAILNMRLRALRKLEE 439

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E  NL AE++ +  L+ S   QW+++  E++ + EI++++T LG+RRT F +   
Sbjct: 440 LEIRKEDTNLRAERKTLKELIGSTALQWDKVRGEVKSLGEIYAETTPLGKRRTVFDKAPD 499

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
                  +A + +EPIT V+S RGW+R+LK H  D++ L FKEGD    A+   TTDR+L
Sbjct: 500 ISGEAPIEAFVVREPITAVLSERGWVRALKGHINDVTELKFKEGDKSAFAVKCETTDRLL 559

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +TDGK YTL A  L  GRGHGE ++L +DL  +   +  F YD    LLV S   + F
Sbjct: 560 MFATDGKFYTLEASKLPGGRGHGEPVRLHVDLPDDAAPIGLFKYDPERTLLVASDGNSGF 619

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
            ++E + +A  + GK  L ++  ++  L +  TGD VA++GEN+KLL+F +++IP MSRG
Sbjct: 620 RIQEKDCLALKKGGKQILNLAEGDEAFLCIPATGDRVALIGENKKLLVFELEEIPVMSRG 679

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGV+L   K   ++D   F   +GLTW+D AGR +N   +D L W  KR   G + P+GF
Sbjct: 680 KGVKLLGGKGAKLADATVFNAEDGLTWLDGAGRRFNL--DDWLLWTAKRAQAGKMAPRGF 737

Query: 745 PRSGKF 750
           PRS +F
Sbjct: 738 PRSLRF 743


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/756 (52%), Positives = 534/756 (70%), Gaps = 28/756 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRII+AM E+ L     F+KSA+I
Sbjct: 16  AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAMRELRLGSTGGFRKSAKI 75

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT 
Sbjct: 76  SGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTA 135

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VAE +L+G+ E+AVDFRD Y+   +EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E
Sbjct: 136 VAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSSGIAVGMATNIPPHNIPE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L LI  P+   + LL Y+ GPDFPTGGIIVE RE+I E+YR GRG FR+R R+ V
Sbjct: 196 LVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAEAYRTGRGAFRLRCRYEV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D+RDESA+D+R++L P+++
Sbjct: 256 EDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDESADDIRVILEPRSK 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++DP++LM  ++  +D+E RF LNMNVL  G  P+V  +  +L+ +L  RREVL RRS  
Sbjct: 316 NVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDFRREVLQRRSVH 375

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------P 415
           RM+ ID R+E+L+GL++A+LN+D +I IIR ++ PK                       P
Sbjct: 376 RMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDPKAALMREDWGRDFVRAMDEADYVPP 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              +   LTE Q +A+LN+RLR+LR+LEE  +  E D L+ E+  ++ LL S   QW  I
Sbjct: 436 APGAPDGLTEVQAEAVLNMRLRALRRLEEMALVKERDALMEERAGLEDLLESEDLQWAAI 495

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + ++RE K+ F K  + G RRTTF E    ++  + +AMIE+EPITVV S  GWIR++  
Sbjct: 496 SDQLREAKKTFGKDYEGGARRTTFAEAGEVEEVPI-EAMIEREPITVVCSQMGWIRAMTG 554

Query: 536 HSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           H +DL   L FK+GD      HA TTDR+L+ ++ G+ YT+ A NL  GRG GE ++L++
Sbjct: 555 H-IDLGRELKFKDGDGPSFMFHAETTDRLLVFASTGRFYTISAANLPGGRGMGEPLRLMV 613

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL +  +I+  F++    K+L+ SS G+ F+V E E++A TR GK  L V  + + ++  
Sbjct: 614 DLPNEAEIIDIFIHKPGGKMLLASSAGDGFVVPEEELLAQTRTGKQVLNVRGDTRARVCK 673

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            V+GDHVAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F + EGL+W+D 
Sbjct: 674 PVSGDHVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWLDP 733

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           AGR+  R+E DL  WLGKR G G + P+GFPR  +F
Sbjct: 734 AGRT--RTETDLGEWLGKRAGTGRMAPRGFPRDNRF 767


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/760 (52%), Positives = 532/760 (70%), Gaps = 29/760 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A  L  A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L  G  F+KS
Sbjct: 13  DTSAEPLSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSAGGRFRKS 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ++I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR
Sbjct: 73  SKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +AE +++G+ E+AVDFRD Y+   +EPVV P+  PNLLANG SGIAVGMAT+IP HN
Sbjct: 133 LTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGASGIAVGMATNIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C AAL LI  P+   E LL Y+ GPDFPTGG +VE R ++ E+YR GRG FR+RA+
Sbjct: 193 IEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAEAYRTGRGSFRLRAK 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E++GRG W IVVTEIPYQVQKSRLIEKIAELI  KR+P+L DIRDESA+D+R++L P
Sbjct: 253 WEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADIRDESADDIRMILEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           +++++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+ +L HRREVL RR
Sbjct: 313 RSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDHRREVLLRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------- 420
           S  RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++                
Sbjct: 373 SRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWSVKRGRAASEADY 432

Query: 421 ---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      L+E Q +AILN+RLRSLR+LEE ++  E D L+ E+  ++ LL S   Q
Sbjct: 433 VSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLESEDLQ 492

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W +I+ +IREV++ F   ++ G RRT   E    ++  L +AMIE+EPITVV S  GW+R
Sbjct: 493 WVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPL-EAMIEREPITVVCSRMGWVR 551

Query: 532 SLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           ++K H +DL+  L FK+GD  + A HA TTDR+L+  T+G+ YT+ A NL  GRG GE +
Sbjct: 552 AMKGH-IDLTQKLKFKDGDEGRFAFHAETTDRLLVFGTNGRFYTVSASNLPGGRGMGEPL 610

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +L+ID  +  DIV   ++    KL+V SS G+ F+V E +++A TR GK  L V  +   
Sbjct: 611 RLMIDFPNEADIVDILIHKPGRKLVVASSAGDGFLVSEDDVLAQTRSGKQVLNVRGDATA 670

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
            +   V GD VAVVGENRK+L+F ++ +PEM+RGKGVRLQ YKDGG+SDV  F + EGL+
Sbjct: 671 LVCKPVQGDTVAVVGENRKVLVFPVEDLPEMARGKGVRLQKYKDGGLSDVTTFNLAEGLS 730

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           W D AGR   R +++L  W G+R G G + P+GFPR  KF
Sbjct: 731 WFDPAGR--RRVQSELAEWTGRRAGSGRMAPRGFPRDNKF 768


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/753 (52%), Positives = 531/753 (70%), Gaps = 28/753 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR AL ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G+
Sbjct: 16  LRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGD 75

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 76  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 135

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIAVGMAT+IP HN+ E+C+
Sbjct: 136 AMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCD 195

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++YR G+GGFR+R RW VE++
Sbjct: 196 ACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDL 255

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+++ P++RS+D
Sbjct: 256 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDIRMIIEPRSRSVD 315

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ +L HR+EVL RRS+ R++
Sbjct: 316 PDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSTHRLE 375

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418
            ID R+E+L+G +IA+LN+D +I IIR +D PK                       PV  
Sbjct: 376 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGRDHPRALNEADYVPPVST 435

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              +LTE Q +AILN+RLRSLR+LEE ++  E + L+ E+  ++ LL +   QW  I  +
Sbjct: 436 DDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGLEDLLENPGLQWASITEQ 495

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +R  K+ F K  D G RRTTF E +  +   + +AMI++EPITVV S  GW+R++  H +
Sbjct: 496 LRATKKQFGKDWDGGARRTTFSEAAVIEDVPI-EAMIDREPITVVCSQMGWVRAMTGH-I 553

Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           DL   L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L  GRG GE ++L+IDL 
Sbjct: 554 DLGRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGGRGMGEPLRLMIDLP 613

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +  +IVT   +    KLLV SS G+ F+V E++++A TR GK  L V  + +  +   V 
Sbjct: 614 NEAEIVTILTHAPDRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTRAMICKPVN 673

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           GD VAVVGENRK+L+F ++ +PEM RGKGVRLQ YKDGG+SD   F   EGL+W+D AGR
Sbjct: 674 GDTVAVVGENRKVLVFPLEDLPEMGRGKGVRLQKYKDGGLSDATTFMRAEGLSWLDPAGR 733

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  RSE DL  W GKR   G + P+GFPR  KF
Sbjct: 734 T--RSETDLAEWTGKRATAGRMAPRGFPRDNKF 764


>gi|332560122|ref|ZP_08414444.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
 gi|332277834|gb|EGJ23149.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
          Length = 767

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/751 (52%), Positives = 531/751 (70%), Gaps = 25/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L     F+KSA+I G+
Sbjct: 19  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E
Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+YR GRGGFR+RA+W  E++
Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGGFRLRAKWQTEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIVL P+ R++D
Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ +L HRR+VL RRS  RM+
Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422
            ID R+E+L GL++A+LN+D +I IIR +  PK  +++     RF               
Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPG 438

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +++L+ S + QW++I  ++
Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E++++F K T  G RRT F E    ++  L +AMIE+EPITV+ S  GWIR++K H   
Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L  GRG GE ++L++DL + 
Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I   FV+    KLL+ SS G+ F+V   E++A TR GK  L +    +  +   V GD
Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I  GL+W D AGR+ 
Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W   R G G + P+GFPR  +F
Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/770 (52%), Positives = 541/770 (70%), Gaps = 32/770 (4%)

Query: 9   SNTLVEENVK--AVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+ L + N++  AVS  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 2   SDLLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT  AE +L G+ EDAVDFRD Y+    EP+V P+ FPNLLANG+SGIA
Sbjct: 122 NPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A L LI +P+   E LL YI GPDFPTGG+IVE  ESI ++Y 
Sbjct: 182 VGMATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQAYL 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+RDE
Sbjct: 242 TGRGAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA+DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+ +
Sbjct: 302 SADDVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414
           L  R+EVL RRS+ RM+ ID R+E+L+GL++A+LN+D +I IIR +D PK          
Sbjct: 362 LDFRQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDPKAALMREDWGR 421

Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                        P       LT+ Q +AILN+RLRSLR+LEE ++++E D L+ E+  +
Sbjct: 422 TVPRAMSEADYVSPPPTDEPGLTDVQAEAILNMRLRSLRRLEEMELRAERDALMQERAGL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL     QW  +A +++EV++ F K+  +G RRT F E    ++  L +AMI++EPIT
Sbjct: 482 EDLLEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAEAGSVEEVPL-EAMIDREPIT 540

Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           VV S  GWIR++  H +DLS  L FK+GD+ +   HA TTDRIL+  ++G+ YT+ A NL
Sbjct: 541 VVCSQMGWIRAMTGH-LDLSRELKFKDGDAPRFMFHAETTDRILVFGSNGRFYTISASNL 599

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +   IV   ++    KLLV S+ G+ FIV E E+IA TR GK 
Sbjct: 600 PGGRGMGEPLRLMVDLPNEAAIVDLLIHKPGRKLLVASTAGDGFIVPEDEVIAQTRSGKQ 659

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L +    +  +   VTGDHVA VG+NRK+L+FS+D++PE+ RGKGVRLQ YKDGG+SD 
Sbjct: 660 VLNLKDPARASVCRPVTGDHVACVGDNRKVLVFSLDELPELGRGKGVRLQKYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F + EGLTW D AGR+  R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 720 TTFNLAEGLTWRDPAGRT--RTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/753 (52%), Positives = 530/753 (70%), Gaps = 28/753 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR AL ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G+
Sbjct: 19  LRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIAVGMAT+IP HN+ E+CE
Sbjct: 139 AMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++YR G+GGFR+R RW VE++
Sbjct: 199 ACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+DVR+++ P++RS+D
Sbjct: 259 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDVRMIIEPRSRSVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ +L HR+EVL RRS  R++
Sbjct: 319 ADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSQHRLE 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418
            ID R+E+L+G +IA+LN+D +I IIR +D PK                       PV  
Sbjct: 379 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGKDHPRALNEADYVPPVPT 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              +LTE Q +AILN+RLRSLR+LEE ++  E + L+AE+  ++ LL S + QW  I  +
Sbjct: 439 DDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMAERAALEDLLESPELQWASITEQ 498

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +R  K+ F K  D G RRTTF E +  +   + +AMI++EPITVV S  GW+R++  H +
Sbjct: 499 LRATKKQFGKDWDGGARRTTFSEATVIEDVPI-EAMIDREPITVVCSEMGWVRAMTGH-I 556

Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           DL+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L  GRG GE ++L+IDL 
Sbjct: 557 DLTRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGGRGMGEPLRLMIDLP 616

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +  +I+T   +    KLLV SS G+ F+V E++++A TR GK  L V  + +  +   V 
Sbjct: 617 NEAEIITILTHAPNRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTRAMICKAVQ 676

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           GD VAVVGENRK+L+F + ++PEM RGKGVRLQ YKDGG+SD   F   +GL+W D AGR
Sbjct: 677 GDTVAVVGENRKVLVFPVGELPEMGRGKGVRLQKYKDGGLSDATTFMQADGLSWQDPAGR 736

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  RSE +L  W GKR   G + P+GFPR  KF
Sbjct: 737 T--RSETELAEWTGKRATAGRMAPRGFPRDNKF 767


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/751 (52%), Positives = 530/751 (70%), Gaps = 25/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L     F+KSA+I G+
Sbjct: 19  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E
Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W  E++
Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIVL P+ R++D
Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ +L HRR+VL RRS  RM+
Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422
            ID R+E+L GL++A+LN+D +I IIR +  PK  +++     RF               
Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWERRFKRANSEKDYVGPGPG 438

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +++L+ S + QW++I  ++
Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E++++F K T  G RRT F E    ++  L +AMIE+EPITV+ S  GWIR++K H   
Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L  GRG GE ++L++DL + 
Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I   FV+    KLL+ SS G+ F+V   E++A TR GK  L +    +  +   V GD
Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I  GL+W D AGR+ 
Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W   R G G + P+GFPR  +F
Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/770 (52%), Positives = 540/770 (70%), Gaps = 32/770 (4%)

Query: 9   SNTLVEENVK--AVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+ L + N++  AVS  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 2   SDLLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  RLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT  AE +L G+ EDAVDFRD Y+    EPVV P+ FPNLLANG+SGIA
Sbjct: 122 NPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A L LI +P+   + LL+YI GPDFPTGG+IVE  ESI ++Y 
Sbjct: 182 VGMATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQAYL 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+RDE
Sbjct: 242 TGRGAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA+DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+ +
Sbjct: 302 SADDVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414
           L  R++VL RRS  RM+ ID R+E+L+GL+IA+LN+D +I IIR ++ PK          
Sbjct: 362 LDFRQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDPKAALMREDWGR 421

Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                        P   +   LTE Q +AILN+RLRSLR+LEE ++++E D L+AE+  +
Sbjct: 422 TVPRAMSEADYVPPPPTAEAGLTEVQAEAILNMRLRSLRRLEEMELRAERDTLMAERAGL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL+    QW  +A +++EVK+ F K+  +G RRT F E    +   L +AMI++EPIT
Sbjct: 482 EDLLDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAEAGSVEDVPL-EAMIDREPIT 540

Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           VV S  GWIR++  H +DLS  L FK+GD  +   HA TTDRIL+  ++G+ YTL A NL
Sbjct: 541 VVCSQMGWIRAMTGH-LDLSRELKFKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASNL 599

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +   IV   ++    KLLV S  G+ FIV E E+IA TR GK 
Sbjct: 600 PGGRGMGEPLRLMVDLPNEAGIVDLLIHKPGRKLLVASDAGDGFIVPEEEVIAQTRSGKQ 659

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L +    +  +   VTGDHVA VG+NRK+L+F++D++PE+ RGKGVRLQ YKDGG+SD 
Sbjct: 660 VLNLKEPARALVCRPVTGDHVACVGDNRKVLVFALDELPELGRGKGVRLQKYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F +  GLTW D AGR+  R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 720 TTFDLAAGLTWRDPAGRT--RTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/751 (52%), Positives = 528/751 (70%), Gaps = 25/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L     F+KSA+I G+
Sbjct: 19  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG SGIAVGMAT+IP HN+ E+ E
Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGASGIAVGMATNIPPHNLDELIE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+I +P I+ E L+  I GPDFPTGG+IVE +ESI+E YR GRG FR+RA+W  E++
Sbjct: 199 GCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILEGYRTGRGAFRLRAKWQTEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIVL P+ R++D
Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF +NMNVL  GR P+V  L  +L+ +L HRREVL RRS  RM+
Sbjct: 319 PEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVLRAFLDHRREVLIRRSEHRME 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422
            ID R+E+L GL++A+LN+D +I IIR +++PK  +++     +F               
Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRALMAETWGRKFKRATSEKDYVGPGAG 438

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE Q +AILN+RLRSLR+LEE ++ +E D L AE+  +  L+ S  +QW +I  ++
Sbjct: 439 PGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERADLADLVGSEPRQWERIGADL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E++++F K T  G RRT F E    ++  L +AMIE+EPITV+ S  GWIR++K H   
Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSKMGWIRAMKGHQPL 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S + FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L  GRG GE ++L++DL + 
Sbjct: 558 GSEVKFKDGDGPRFMFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I    ++    KLL+ SS G+ F+V   E++A TR GK  L +       +   + GD
Sbjct: 618 AEIADLIIWRPGEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKDGVTTAVCRPIRGD 677

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD I F++  GL+W D AGR+ 
Sbjct: 678 HVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAITFELARGLSWKDPAGRT- 736

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E DL  W G R G G + P+GFPR  +F
Sbjct: 737 -RTETDLAEWTGARAGAGKMAPRGFPRDNRF 766


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/755 (51%), Positives = 535/755 (70%), Gaps = 12/755 (1%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S+ +        A  L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+
Sbjct: 15  TMSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMREL 74

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGN+GNIDGD
Sbjct: 75  KLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNIDGD 134

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+   AE +L+G+ ED+VDFR  Y+   +EPVV P+ FPNLLANG SGIA
Sbjct: 135 GPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASGIA 194

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  LA+I +P I   +L++ I GPDFPTGG+IVE + +I+E+YR
Sbjct: 195 VGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEAYR 254

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+RARW +E++GRG W IVVTEIPYQVQK++LIE++AELI  K++P L D+RDE
Sbjct: 255 TGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVRDE 314

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAEDVRIVL P+ R+++P  LM  +F  S++E RF LNMNVL  GRVP+V  L  +L+ +
Sbjct: 315 SAEDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVLRAF 374

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---- 420
           L HRREVL RRS  R++ I  R+E+L+G +IA+LN+D +I IIR ED PK  +++     
Sbjct: 375 LDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAALMAENWAA 434

Query: 421 -----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                  LTE Q +AILN+RLRSLR+LEE ++++E D+LL E+  +++LL S   QW QI
Sbjct: 435 EAGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDDLLKERAGLEALLASEVAQWAQI 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+ ++++ + K+T +G RRT F E    ++  + +AMIE+EPITV++S  GW+R++K 
Sbjct: 495 SSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPI-EAMIEREPITVILSKMGWVRAMKG 553

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H    + + FK+GD    ALHA TTDRI+L+ ++G+A+TL   NL  GRG GE ++L+++
Sbjct: 554 HQPLDAEVKFKDGDGQAFALHAETTDRIVLMGSNGRAWTLLGANLPGGRGMGEPVRLMLE 613

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +  ++    V     K L+ SS+G+ FI    E+IA+TR GK  L +S   + ++   
Sbjct: 614 MPNEVEVTHVLVPKPGEKYLLASSEGDGFIAPAEELIASTRTGKQVLNMSDGVRTRVCRV 673

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            +GD VA VGENRKLL+F ++++PEM+RGKGVRLQ +KDGG+SD I F++ EGL+W D A
Sbjct: 674 ASGDAVACVGENRKLLVFPLEELPEMARGKGVRLQKFKDGGLSDAITFRLAEGLSWKDPA 733

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GR+  R+E DL  WLGKR   G + P+GFPR  +F
Sbjct: 734 GRT--RTEADLSEWLGKRASAGRMAPRGFPRDNRF 766


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/751 (52%), Positives = 529/751 (70%), Gaps = 25/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L     F+KSA+I G+
Sbjct: 19  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E
Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W  E++
Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIVL P+ R++D
Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ +L HRR VL RRS  RM+
Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRNVLIRRSQHRME 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422
            ID R+E+L GL++A+LN+D +I IIR +  PK  +++     RF               
Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPG 438

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +++L+ S + QW++I  ++
Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E++++F K T  G RRT F E    ++  L +AMIE+EPITV+ S  GWIR++K H   
Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L  GRG GE ++L++DL + 
Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I   FV+    KLL+ SS G+ F+V   E++A TR GK  L +    +  +   V GD
Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I  GL+W D AGR+ 
Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W   R G G + P+GFPR  +F
Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/751 (52%), Positives = 530/751 (70%), Gaps = 25/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L     F+KSA+I G+
Sbjct: 19  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE
Sbjct: 79  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E
Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W  E++
Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIVL P+ R++D
Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ +L HRR+VL RRS  RM+
Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422
            ID R+E+L GL++A+LN+D +I IIR +  PK  +++     +F               
Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRKFKRANSEKDYVGPGPG 438

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +++L+ S + QW++I  ++
Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E++++F K T  G RRT F E    ++  L +AMIE+EPITV+ S  GWIR++K H   
Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L  GRG GE ++L++DL + 
Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I   FV+    KLL+ SS G+ F+V   E++A TR GK  L +    +  +   V GD
Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I  GL+W D AGR+ 
Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W   R G G + P+GFPR  +F
Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/775 (51%), Positives = 542/775 (69%), Gaps = 34/775 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +I++ + L   NV    LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 3   DITDPSDLDPRNVSE-PLRLALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIA
Sbjct: 122 NPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A + LI  PE   + LL ++ GPDFPTGGIIVE  E+I  +YR
Sbjct: 182 VGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIANAYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+GGFR+R RW VE++GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDE
Sbjct: 242 TGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDVRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+R+++ P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +
Sbjct: 302 SAEDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRAF 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414
           L HRREVL RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR +  PK          
Sbjct: 362 LDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADPKAALMAEDWGK 421

Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                        P   +  SLTE Q DAILN+RLRSLR+LEE ++  E   L+AE+  +
Sbjct: 422 KHSRATDESDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQSELMAERAGL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIE 516
           + LL+S   QW+ I  ++R  K+ F K       ++G RRTTF E    +   L +AMI+
Sbjct: 482 EDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIEDVPL-EAMID 540

Query: 517 KEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +EPITVV S  GWIR++  H +DL+  L FK+GD  +   HA TTDR+L+  ++G+ YT+
Sbjct: 541 REPITVVCSEMGWIRAMTGH-IDLNRELKFKDGDGPRFVFHAETTDRLLVFGSNGRFYTI 599

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A +L  GRG GE ++L++DL ++  IV  F++    KLLV SS G+ F+V E E++A T
Sbjct: 600 GAVSLPGGRGMGEPLRLMVDLPNDVQIVDIFIHKPGRKLLVASSAGDGFVVPEDEVLAQT 659

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
           R GK  L V  + K  +   + G+ VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDG
Sbjct: 660 RSGKQVLNVRGDAKAMICAPIKGEAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDG 719

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G+SD   F + EGL+W+D AGR+  R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 720 GMSDATTFTLSEGLSWLDPAGRT--RTESDLTEWTGKRASAGRMAPRGFPRDNRF 772


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/751 (52%), Positives = 524/751 (69%), Gaps = 23/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G+
Sbjct: 27  LRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGD 86

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T  AE
Sbjct: 87  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAAAE 146

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +++G+ E+AVDFRD Y+   +EP V P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 147 ALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELID 206

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             L LI  P    E LLE I GPDFPTGG+IVE +ESI ++Y  GRG FR+RARW  E++
Sbjct: 207 GCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWAREDL 266

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IV+TEIPYQVQKS+LIEKIA+LI  K++P+L DIRDESA+DVRI+L P+++++D
Sbjct: 267 GRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDESADDVRIILEPRSKNVD 326

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM ++F LS++ETRF LNMNVL  GR P+V  L  +L+ +L HRR+VL RRS  R+ 
Sbjct: 327 PEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRLA 386

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419
            ID R+E+L+G L+A+LN+D +I IIR ++ PK  ++                       
Sbjct: 387 KIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKTPAPG 446

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE Q +AILN+RLRSLR+LEE ++ SE D L+AE+ +++ LL     QW +IA E+
Sbjct: 447 EGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARIADEL 506

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           REV++ F K T LG+RRT F   +   + +L+  MIE+EPITVV S  GWIR++K H   
Sbjct: 507 REVRKQFGKGTALGKRRTDFAVATEMAEVSLED-MIEREPITVVCSKMGWIRAMKGHVAL 565

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
             AL FK+GD  +   HA TTD++L    +G+ YTL    L  GRG GE I+L++DL + 
Sbjct: 566 DQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDLPNE 625

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            ++V  F++    +L+V S  G+ FIV E+E++A TR GK  L V S  +  L   V GD
Sbjct: 626 AELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAGD 685

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A VGENRKLL+F+ D++PEM RGKGVRLQ YKDGG+SD+  F   +GL W+D+ GR+ 
Sbjct: 686 AIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDGGLSDLRSFDRAQGLQWLDAGGRTR 745

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++ +L  W GKR G G + P+GFPR  KF
Sbjct: 746 TVADPELAEWSGKRAGTGRMAPRGFPRDNKF 776


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/756 (52%), Positives = 536/756 (70%), Gaps = 32/756 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SLR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AMS + L     F KSA+I G
Sbjct: 17  SLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSPTGGFLKSAKISG 76

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           + +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT  A
Sbjct: 77  DTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAA 136

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+G+ EDAVDFRD Y+   +EP V P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 137 EALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGSSGIAVGMATNIPPHNLHELI 196

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A L LI +P  + + LL +I+GPDFPTGG+IVE  E++ E+YR GRG FR+RA+W VE+
Sbjct: 197 DACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMAEAYRTGRGSFRLRAKWEVED 256

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D+RDESAEDVR+VL P+ RS+
Sbjct: 257 LGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESAEDVRVVLEPRARSV 316

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+ +L HRR+VL RRS  R+
Sbjct: 317 DPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLVRRSRHRL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------------- 419
             ID R+E+L+G +IA+L++D +I IIR +D PK  +++                     
Sbjct: 377 GKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSALMAEDWAHPHIRATSEKDYVGPKA 436

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                +LTE Q +AILN+RLRSLR+LEE ++ +E D L AE++ I +LL     QW +IA
Sbjct: 437 TDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDALRAERQGIMALLADEALQWARIA 496

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS 535
            E+RE ++ F +++  G RRT F     AD A +  +AMI++EPITVV S  GW+R++  
Sbjct: 497 DELRETRKQFGRTSPGGARRTQFALA--ADVAYVPIEAMIDREPITVVCSQMGWVRAMTG 554

Query: 536 HSVDLSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           H +DL+  L FK+GD+ +   HA TTD++L+   +G+ YT+ A NL  GRG GE ++L+I
Sbjct: 555 H-IDLTRDLKFKDGDAARFTFHAETTDKLLVFGANGRFYTVSAANLPGGRGMGEPLRLMI 613

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL +  +I+   ++    KLLV S+ GN F+V E E++A TR GK  L + +    +L  
Sbjct: 614 DLPNEAEIIDILIHKPGEKLLVASTDGNGFVVPEVEVVAQTRAGKQVLNLGA-STARLCK 672

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           ++ GDHVAVVGENRK+L+F ID++PEM+RGKGVRLQ YKDGG+SD   F + +GLTW+D 
Sbjct: 673 RIAGDHVAVVGENRKVLVFGIDELPEMTRGKGVRLQKYKDGGLSDATTFTLADGLTWLDP 732

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           AGR+  R++++L  W+GKR   G + P+GFPR  +F
Sbjct: 733 AGRT--RTQSELDEWIGKRATAGRMAPRGFPRDNRF 766


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/743 (53%), Positives = 531/743 (71%), Gaps = 20/743 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL+YALSTI  R++PD+RDG KPVHRR+++AMS++ L+     KKSAR+VG+VIG
Sbjct: 16  ALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAMSQLRLEPTTPPKKSARVVGDVIG 75

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA+ +L
Sbjct: 76  KFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARLTEVAKAML 135

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DEDA DFR TY+ E  EP+V P+ FPNLLANG++GIAVGMAT+IP HNV EIC  AL
Sbjct: 136 AGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSAGIAVGMATNIPPHNVGEIC-GAL 194

Query: 205 ALIDNPE----------ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            LI   E          +++E+L+ +I GPDFPTGG++VESRE+I+E+YR GRG FR RA
Sbjct: 195 NLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVLVESRENILEAYRTGRGAFRTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E + +G+W I+VT+IPYQVQKSRL+EKIAEL+  K++PLLED+RDESAED+R+VL 
Sbjct: 255 RWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAEKKLPLLEDVRDESAEDIRLVLV 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM---GRVPQVMPLDGILKEWLAHRREV 371
           PK+R++DPD++ME +F  +D+ETRF +NMNVL     G VP+VM L  +L+ +L HR+EV
Sbjct: 315 PKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGGLVPRVMTLYEVLRAFLEHRQEV 374

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  ID R+E+L G LIAYLNIDE+I IIR ED+PK  +++RFSLT+ Q +AI
Sbjct: 375 LLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIREEDEPKRELMARFSLTDVQAEAI 434

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE++I+ E D L  E+  +  LL  G ++W  I+ E+ E+   F ++T 
Sbjct: 435 LNMRLRSLRKLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMDRKFGRTTA 494

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFKEGD 549
           LG RRT   E  + D A   +AMIE+EP+TV +S +GWIR+++ H  + +++   +K+GD
Sbjct: 495 LGERRTLIGEPPK-DLAVPAEAMIEREPVTVFLSEKGWIRTVRGHQSAQEVAGTKYKDGD 553

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             +  LHA TTDR+LL +  GK YTL    L  GRG GE ++L++DL   + IV    + 
Sbjct: 554 RERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGFGEPVRLMVDLGEAE-IVALLRHQ 612

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              +L+V S+ G  F VE  +++A TR GK  L  +      L V   GD VAV+G NRK
Sbjct: 613 PGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLAVPAEGDAVAVIGNNRK 672

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN--DLL 727
           LL+F ++++P M+RGKGV+LQ YKD  +SD+  F + EGL+W         R+    DL 
Sbjct: 673 LLVFKLEELPVMTRGKGVQLQKYKDASLSDLKVFALAEGLSWRMGGSGEKTRTVTLPDLQ 732

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
           GW+  RG  G L P GFP+  +F
Sbjct: 733 GWIAYRGTQGKLPPNGFPKDNRF 755


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/772 (50%), Positives = 534/772 (69%), Gaps = 32/772 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +D +    T + E      LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 5   IDPVDTPETEITE-----PLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  RLRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+ E+AVD+RD Y+    EPVV P+ FPNLLANG++G
Sbjct: 120 GDNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGSTG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HNV E+C+A L LI +P    E LL+Y+ GPDFPTGG+IVE +E+I+E+
Sbjct: 180 IAVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+R +W  E++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K+IP+L D+R
Sbjct: 240 YRTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDVR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+DVRI+L PK++++DPD+LM  ++  SD+E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESADDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            ++ HR++VL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 360 AFIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 419

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q +AILN+RLRSLR+LEE ++  E D L+ E+
Sbjct: 420 AQEFVRATSESDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERDALMEER 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +D LL+  + QW +I+ ++RE ++ F K+ + G RR+ F E    ++  + +AMIE+E
Sbjct: 480 ANLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPI-EAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           PITVV S  GW+R+LK H+   S + FK+GD  +   HA TTDR+L+  ++G+ YTL A 
Sbjct: 539 PITVVCSKMGWVRALKGHADLTSKVKFKDGDEARFMFHAETTDRLLIFGSNGRFYTLGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +  +IV   ++    KLLV S+ G+ FIV E+++IA TR G
Sbjct: 599 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPDRKLLVASTAGDGFIVPENDVIAQTRSG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  L V    +  ++  V GDH+A VGENRK+L F + ++PEM RGKGVRLQ YKDGG+S
Sbjct: 659 KQVLNVKEGVRAFVLSPVKGDHLACVGENRKVLAFPLTELPEMGRGKGVRLQKYKDGGLS 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D   F + +GL+W D AGR+  R+E +L  W+GKR   G + P+GFPR  +F
Sbjct: 719 DATFFTLADGLSWKDPAGRT--RTETELTEWMGKRASAGRMAPRGFPRDNRF 768


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/754 (52%), Positives = 528/754 (70%), Gaps = 29/754 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L  A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G+
Sbjct: 25  LSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAKISGD 84

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ FV RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 85  VMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMTAVAE 144

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G+ EDAV+FRD Y+    EP V P++ PNLLANG+SGIAVGMAT+IP HN+ E+  
Sbjct: 145 ALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLDELIA 204

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L LI  P+   E LL Y+ GPDFPTGG+IVE RES+ E+YR G+GGFRVRA   +E++
Sbjct: 205 ACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHEIEDL 264

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEK+AELI  K++P+L D+RDESA+D+RIVL P+++++D
Sbjct: 265 GRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESADDIRIVLEPRSKTVD 324

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD+LM +++  SD+E RF LNMNVL  GR P+V  L  +L+ +L HR++VL RRS  RM 
Sbjct: 325 PDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRSRHRMA 384

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419
            ID R+E+L+G LIA+LN+D +I IIR +D PK  ++                       
Sbjct: 385 QIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAALMREDWGQDFVRAMSEADYVSPKPG 444

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE QV+AILN+RLRSLR+LEE ++++E D L+ E+  ++ LL     QW +IA E+
Sbjct: 445 EGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAEESLQWGRIAEEL 504

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           REV++ F    D G RRT F E    ++ +L +AMIE+EP+T+V S  GWIR++K H VD
Sbjct: 505 REVRKKFGSRADGGARRTQFAEAGNIEEVSL-EAMIEREPVTIVCSQMGWIRAMKGH-VD 562

Query: 540 LSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           LS  + F++GD  + A+HA TTD++L+L + G+ YTL A  L  GRG GE ++L++DL +
Sbjct: 563 LSQEMKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGLPGGRGLGEPLRLMVDLPN 622

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              IV  FV+    K L+ SS G+ F+V E +I+A TR GK  L V       +   V  
Sbjct: 623 EVQIVDLFVHHPGAKRLMASSAGDGFLVAEEDILAQTRSGKQVLNVKDGVTASVCRAVAP 682

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             DHVAVVGENRKLL+F + ++PEM RGKGVRLQ YKDGG+SD   F++ +GL W+D AG
Sbjct: 683 EDDHVAVVGENRKLLVFPLTELPEMGRGKGVRLQKYKDGGLSDARTFRLEDGLVWLDPAG 742

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+  R+E +L  W  KR G G + P+GFPR  +F
Sbjct: 743 RT--RTEVELGEWAAKRAGAGRMAPRGFPRDNQF 774


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/778 (50%), Positives = 541/778 (69%), Gaps = 32/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +G     N + L  +     +LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 29  LGYTRSMNDDALDPKMNPTETLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 88

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 89  MRELKLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 148

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+
Sbjct: 149 IDGDNPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGS 208

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN++E+  A L LI +P    E LL+YI GPDFPTGG+IVE +E+I 
Sbjct: 209 SGIAVGMATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIA 268

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR G+GGFR+R ++ VE++GRG W +++TEIPYQVQKSRLIEK+AE+I  K++P+L D
Sbjct: 269 EAYRTGKGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILAD 328

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAED+RIVL PK++++D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +
Sbjct: 329 VRDESAEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEV 388

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L+ +L HRR+VL RRS+ RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  +++ 
Sbjct: 389 LRAFLDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAE 448

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LT+ Q +AILN+RLRSLR+LEE ++  E D 
Sbjct: 449 DWGKTHARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDA 508

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+ E+  ++ LL+S   QW  IA ++RE +++F  +++ G RRT F      +   L +A
Sbjct: 509 LMLERAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFAVAGVVEDVPL-EA 567

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           MI+KEP+TVV S  GWIR+L  H +DL+  L FK+GD  +   HA TTDR+L+  ++G+ 
Sbjct: 568 MIDKEPVTVVCSKMGWIRALTGH-IDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRF 626

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
           YT+    L  GRG GE ++L++DL +  +IV  F++ +  KLLV SS G+ F+V E ++I
Sbjct: 627 YTMGTSTLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNKLLVASSAGDGFVVPEDDVI 686

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692
           A TR GK  L V  + + ++   VTGD+VA VGENRK+L+F +D++PEM RGKGVRLQ Y
Sbjct: 687 AQTRAGKQVLNVKGDVRARVCSTVTGDYVACVGENRKVLLFPLDELPEMGRGKGVRLQKY 746

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           KDGG+SD   F + +GL+W+D AGR+  R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 747 KDGGLSDATTFTLADGLSWLDPAGRT--RTQTELAEWAAKRAGAGRMAPRGFPRDNRF 802


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/758 (51%), Positives = 533/758 (70%), Gaps = 33/758 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR AL +RYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L+    F+KSA+I G+
Sbjct: 21  LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLNSTGGFRKSAKISGD 80

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 81  VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 140

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 141 AMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVD 200

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +YR G+GGFR+R RW  E++
Sbjct: 201 ACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDL 260

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+++ P+++++D
Sbjct: 261 GRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVD 320

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRREVL RRS++RM+
Sbjct: 321 PEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTYRME 380

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418
            ID R+E+L+G ++A+LN+D +I IIR ++ PK                       P   
Sbjct: 381 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPS 440

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +  SL+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  ++ LL +   QW+ I  +
Sbjct: 441 AENSLSEVQADAILNMRLRSLRRLEEIELLREQAALMEERSGLEDLLENEGTQWDTIIDQ 500

Query: 479 IREVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +RE K+ F K       ++GRRRT+F E    ++  L +AMI++EPITVV S  GWIR++
Sbjct: 501 LRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMIDREPITVVCSQMGWIRAM 559

Query: 534 KSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             H +DL+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A  L  GRG GE ++L
Sbjct: 560 TGH-IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRL 618

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++DL +   IV   ++ +  KLLV SS G+ FIV E +++A TR GK  L V  + K  +
Sbjct: 619 MVDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRGGKQVLNVRGDAKAMI 678

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
              VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F    GL+W 
Sbjct: 679 CAPVTGDAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSWQ 738

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D AGR+  R+E DL  W GKR   G + P+GFPR  +F
Sbjct: 739 DPAGRT--RTEADLTEWTGKRATAGRMAPRGFPRDNRF 774


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/730 (53%), Positives = 516/730 (70%), Gaps = 9/730 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALS I +RA+PD+RDG KPV RR+++AM EM L+   A +K A++VGEV+G
Sbjct: 24  ALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAMREMRLNPENAARKCAKVVGEVMG 83

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGDQ++YD+LVR+AQ F QRYPL+ GQGNFGNIDGD+AAA RYTEA++T  A L+L
Sbjct: 84  GYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNIDGDNAAAMRYTEAKLTAAATLLL 143

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G++EDAVDF+ TY+  D EPVV P+ FPNLLANG++GIAVGMATSIP HN  E+ +A L
Sbjct: 144 DGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGSTGIAVGMATSIPPHNAGELIDACL 203

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L++NPE S E L+ ++ GPDFPTGG+IVE R+S+ E+Y  GRGG RVRARW  E++G+G
Sbjct: 204 LLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAETYATGRGGVRVRARWTKEDLGKG 263

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ IVVTEIPYQV+K+ L+EK+AELI AK+ PLL D+RDESAEDVR+VL PK+R+++ ++
Sbjct: 264 TYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDVRDESAEDVRLVLEPKSRNVEAEV 323

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LSD+ETRF +N+NVL     P VM L   LK +L HRREVL RR+  R++ I+
Sbjct: 324 LMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQALKAFLDHRREVLVRRARHRLEKIE 383

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+ IL GL+IAYLN+DE+I I+R EDKPK  ++  FSL+E Q DAILN RLR L KLEE
Sbjct: 384 ARLHILDGLMIAYLNLDEVIRIVRYEDKPKEKLIETFSLSEIQADAILNTRLRQLAKLEE 443

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   L  E++ I  +L S   QW  +   +R VK    K  D   RR+TF E  +
Sbjct: 444 MEIRREHAELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGKLND---RRSTFGEAPQ 500

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            D     +AMI +EPIT+++S RGWIR+ K    D S L FKEGD L+  + A TTD++L
Sbjct: 501 VDAEAAIEAMIVREPITIILSERGWIRAAKGRIEDPSELKFKEGDKLQFLVPAETTDKLL 560

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + ++DG+ +TL    L   RGHGE ++L+IDL+    IV  F +    K L+ S +G  F
Sbjct: 561 IFASDGRFFTLGCDKLPGARGHGEPLRLMIDLDDKVGIVDVFPHKPGAKRLLASKQGYGF 620

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           I+ E E IA  R GK  L      K      + + VTGD +AVVG+N K+L+F + ++PE
Sbjct: 621 ILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKILVFPLAELPE 680

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           M RGKGV+LQSY++GG+ D + F   EG  WID+AGR+  R+ +    W G+R G G L 
Sbjct: 681 MPRGKGVKLQSYREGGLRDALVFNAAEGAAWIDAAGRT--RAWDGWQEWAGRRAGAGKLA 738

Query: 741 PKGFPRSGKF 750
           PKGFP + +F
Sbjct: 739 PKGFPATKRF 748


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/727 (53%), Positives = 529/727 (72%), Gaps = 6/727 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYLAYALSTI  RA+PD+RDG KPV RRI++ M  + LD    ++K A+IVG+V+G
Sbjct: 21  ALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVLRLDPEGGYRKCAKIVGDVMG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT+ AEL++
Sbjct: 81  NYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAYRYTEARMTRGAELLM 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+DE+AVDFR  Y E D EPVV P+ FPNLLANG +GIAVGMATSIP HNV EI +AA 
Sbjct: 141 EGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIAVGMATSIPPHNVAEIIDAAR 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI+ P+ + E+L+E++ GPDFPTGG+IVE R S++E+Y  GRG FR+RARW VE+ GRG
Sbjct: 201 HLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYETGRGAFRMRARWHVEDTGRG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ I+VTEIPYQVQKSRL+EK++EL+ AK++PLLED+RDESAEDVR+VL P+ ++++PD+
Sbjct: 261 TYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDESAEDVRLVLVPRAKTVEPDV 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F   D+ETRF LNMNVL  G  PQVM L  +L+ +L HRREV+ RR+ FR+  I+
Sbjct: 321 LMESLFRTCDLETRFSLNMNVLHKG-APQVMGLRDVLQAYLDHRREVVVRRAEFRLDKIE 379

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ IL+G L AYLNIDE+I IIR ED+PKPV++ RF +++ Q +AILNLRLR+LRKLEE
Sbjct: 380 KRLHILEGFLKAYLNIDEVIRIIRTEDEPKPVLMKRFKISDIQAEAILNLRLRALRKLEE 439

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   L  E++++  L+ S ++QW +++ E++  ++ F  ST LGRRR TF +   
Sbjct: 440 MEIQGEHTKLTEERDELVLLIGSVRRQWTRVSKELKAARDEFDPSTALGRRRATFEQAPT 499

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            D A   +A   KEP+TVV+S +GWIR +K H +D   + FKEGD         +TD+++
Sbjct: 500 VDLAAALEATRPKEPVTVVLSAQGWIRGMKGHGLDPDTIKFKEGDGPSFTEEVMSTDKLV 559

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            +S+DG+A+ LPA  L  GRGHGE I++ I+L  N  IV  F ++   K ++ SS G  F
Sbjct: 560 FMSSDGRAFMLPADKLPGGRGHGEPIRISIELEDNVAIVGMFKFEPERKRVMASSTGYGF 619

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +V E+E+ +N + GK  +       + + V V GD +AVVG NRK+LIF +  +PEM RG
Sbjct: 620 VVPEAELESNRKAGKQIVNTGGGH-LNVCVPVLGDMIAVVGTNRKMLIFPLKDLPEMPRG 678

Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           KG +LQSY  G  ++D+I F   +GL  + + GR   R+  +   W G+R   G +VPKG
Sbjct: 679 KGNKLQSYSGGAELADLITFDKRDGLIVV-TGGRF--RAFEEWKEWKGQRAQAGKVVPKG 735

Query: 744 FPRSGKF 750
           FPR+G F
Sbjct: 736 FPRTGTF 742


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/758 (51%), Positives = 535/758 (70%), Gaps = 32/758 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G
Sbjct: 50  TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKLASKGGFRKSAKISG 109

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT  A
Sbjct: 110 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTAAA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+SGIAVGMAT+IP HN++E+ 
Sbjct: 170 EALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLEELI 229

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A L LI  P+   E L+ YI GPDFPTGG+IVE +E+I E+YR G+GGFR+R ++ VE+
Sbjct: 230 GACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYRTGKGGFRLRCKYEVED 289

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W ++VTEIPYQVQKSRLIEK+AE+I  K++P+L D+RDESAED+RIVL PK++++
Sbjct: 290 LGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDESAEDIRIVLEPKSKNV 349

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +L+ +L HRR+VL RRS+ RM
Sbjct: 350 DVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLIRRSTHRM 409

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------------- 419
             ID R+E+L+G +IA+LN+D +I IIR ++ PK  +++                     
Sbjct: 410 VKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAEDWGKTHVRAMDEADYVSPLT 469

Query: 420 ------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    LT+ Q +AILN+RLRSLR+LEE ++  E D L+ E+  ++ LL+S   QW 
Sbjct: 470 ALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLERAGLEDLLDSDDLQWK 529

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            IA ++RE +++F  ++  G RRT F E    +   L +AMI+KEP+TVV S  GWIR++
Sbjct: 530 TIAEQLRETRKLFGSNSKGGARRTAFAEAGVIEDVPL-EAMIDKEPVTVVCSKMGWIRAM 588

Query: 534 KSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             H +DL+  L FK+GD  +   HA TTDR+L+  ++G+ YTL A  L  GRG GE ++L
Sbjct: 589 TGH-IDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTLGASTLPGGRGMGEPLRL 647

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++DL +  +IV  F++ +  +L++VSS G+ FIV E ++IA TR GK  L V  + + K+
Sbjct: 648 MVDLPNEAEIVALFIHRAGNRLMIVSSAGDGFIVPEDDVIAQTRAGKQALNVKGDVRAKV 707

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
              V GDHVA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W+
Sbjct: 708 CSTVIGDHVACVGENRKVLLFPLDELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWL 767

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D AGR+  R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 768 DPAGRT--RTQTELGEWAAKRAGAGRMAPRGFPRDNRF 803


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/760 (50%), Positives = 523/760 (68%), Gaps = 25/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E    +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L   +AF
Sbjct: 10  IEPQEHSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELKLSPTSAF 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYT
Sbjct: 70  RKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYT 129

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +AE +++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG+SGIAVGMAT+IP
Sbjct: 130 EARLTAIAEALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSSGIAVGMATNIP 189

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALI +P++    L++ I GPDFPTGG+IVE R SI++SYR GRG FR+
Sbjct: 190 PHNLHELIDGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILDSYRTGRGSFRL 249

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RARW VE++GRG W IVVTEIPYQVQKS+LIE++AELI  K+ PLL D+RDES  DVR++
Sbjct: 250 RARWAVEDLGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADVRDESTADVRLI 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L P+ R++DPD+LM ++F  SD+E RF LNMNVL  GR P+V  L  +L+ +L H+REVL
Sbjct: 310 LEPRVRTVDPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREVLRAFLDHKREVL 369

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------ 414
            RRS  R++ ID R+EIL+G +I +LN+D +I IIR +  PK                  
Sbjct: 370 QRRSRHRLEKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRALMAEDWGKKHRRATSE 429

Query: 415 ----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
               P       LTE Q +AILN+RLRSLR+LEE ++ +E D L+ E+  ++ LL S   
Sbjct: 430 KDYVPPAPGEGELTEVQAEAILNMRLRSLRRLEELELIAERDALMVERAGLEDLLASDAL 489

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           QW +I  ++ EV++ F K++  G RR+TF E   A++    +AMIE+EPITV+ S  GWI
Sbjct: 490 QWKRIGKDLAEVQKTFGKASKGGARRSTFAEAGEAEEVPY-EAMIEREPITVICSKMGWI 548

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R++K H    S   FK+GD  +   HA TTDRI+L+ ++G+ YTL   NL  GRG GE +
Sbjct: 549 RAMKGHVALDSEQKFKDGDEGRFLFHAETTDRIILIGSNGRVYTLLGANLPGGRGMGEPV 608

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +L++DL ++ +I+   ++    KLL+ S+ G+ F++   E++A T+ GK  L V    K 
Sbjct: 609 RLMVDLPNDAEIIDLMIHRPGLKLLIASTAGDGFVLPSDEVVAQTKAGKQVLVVREGVKT 668

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
            L   V GD VAVVG+NRK+L+F +  +PEM+RGKGVRLQ YKDGG++D   F + +GL+
Sbjct: 669 ALCRPVKGDAVAVVGDNRKMLVFPLADLPEMARGKGVRLQKYKDGGLADATTFVLAQGLS 728

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           W D AGR+  R+E DL  W   R   G + P+GFPR  +F
Sbjct: 729 WKDPAGRT--RTETDLAEWQAARATAGRMAPRGFPRDNRF 766


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/742 (52%), Positives = 534/742 (71%), Gaps = 8/742 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V  +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD    F
Sbjct: 6   VTGDIRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPSGGF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYT
Sbjct: 66  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++T++A  +++G+DED+VDFR TY+  + EPVV PS FPNLLANG++GIAVGMATSIP
Sbjct: 126 EAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSAGIAVGMATSIP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE++ +I E+YR G+G FRV
Sbjct: 186 PHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITEAYRTGKGAFRV 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED+R+V
Sbjct: 246 RAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAEDIRLV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGILKEWLAHR 368
           L P+NR+++ +L+ME +F  +D+E+RF LNMNVL+        P VM L  +L+ +L HR
Sbjct: 306 LEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNLKEVLRAFLDHR 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             VL RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+E Q 
Sbjct: 366 MVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPKAELIKTFKLSEVQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E ++ F  
Sbjct: 426 EAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGG 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +T LG+RRT   +   A    + +A +E+E IT+V+S +GWIR+LK HS    AL FKEG
Sbjct: 486 ATALGKRRTELGDAPSAVVVPI-EAYVEREAITMVLSEKGWIRALKGHSDAPEALKFKEG 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI    V+
Sbjct: 545 DQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAAVMVH 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
               KLLV ++    F+VEE+E++A TR GK  L  +  EK K  +   GD VAV+GENR
Sbjct: 605 KPGRKLLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEKAKFCLPFEGDAVAVIGENR 664

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KLL+F  ++IP ++RG+GV LQ Y+DGG++D+  F + +GLTW  + G    R+E+DL  
Sbjct: 665 KLLVFMAEEIPVLTRGRGVILQKYRDGGMADIKVFTLAQGLTW--NLGDRV-RTESDLTP 721

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           WLGKR  VG L P GFPR+ +F
Sbjct: 722 WLGKRASVGRLPPTGFPRNNRF 743


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/725 (53%), Positives = 526/725 (72%), Gaps = 3/725 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S   AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM  + L    AFKK AR+VG
Sbjct: 16  SFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLKLSPDTAFKKCARVVG 75

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIG+ HPHGDQ+VY++LVRLAQ F  RYPL+ GQGNFGN+DGD AAA RYTEAR+T+ A
Sbjct: 76  DVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDGAAAMRYTEARLTEAA 135

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            LILQ  DE  VDFR+TY+ ED EP+V P+ FPNLLANG++GIAVGMAT+IP HN  E+C
Sbjct: 136 ILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAVGMATNIPPHNAAELC 195

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA  LI  P  + E LL Y+ GPDFPTGG+ VE+RE+I+E+Y  GRGGFR+RARW VEE
Sbjct: 196 DAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYETGRGGFRLRARWEVEE 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPY VQK++LIE+IA L+  K++PLL D+ DESAEDVR++L PK+R++
Sbjct: 256 LGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDESAEDVRLILEPKSRTI 315

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP LLMES+F L+D+E RF LN+NVL     P+V+ L   L+ WL HRR V+ RR++ R+
Sbjct: 316 DPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWLDHRRVVVVRRATTRL 375

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + ++ R+E+L G ++AYLN+DE+I IIR ED PK  ++  FSLT+ Q +AILN+RLRSLR
Sbjct: 376 EHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKDELIKTFSLTDRQAEAILNMRLRSLR 435

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           KLEE +I+ E   L  E++++++L+     QW ++  E+ +VK+ F  +T+LG+RRTTF 
Sbjct: 436 KLEEMEIRDEQSRLEGERDELNALIADESLQWKKVDSEVADVKKRFGPNTELGKRRTTFA 495

Query: 501 EVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
           +   AD A + ++A+I +EPIT+V+S  GW+R+LK H+ D++ +  K+GD    +L A T
Sbjct: 496 DAPAADLADMVEEALIPREPITIVLSRMGWVRALKGHTDDVTGIKHKDGDETAFSLKAET 555

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           TD+IL+L+TDG+ YTL A  L  GRG GE ++LLID++ + + V  F Y    KLL+ S+
Sbjct: 556 TDKILMLTTDGRVYTLDASKLPGGRGFGEPVRLLIDMDESAEPVALFKYSPDRKLLLAST 615

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G+ F+V E E+ A  R G+  L V    K  + + +TGD +AV+GEN+KLL+F+ D+IP
Sbjct: 616 SGHGFVVAEKELPAIKRAGRQVLNVIDGHKAMMALPMTGDRIAVLGENKKLLVFAADEIP 675

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM RGKGVRL   K G ++D+  F   EGL  +D AGR +     D   + GKR   G L
Sbjct: 676 EMVRGKGVRLLGGKAGEVADITVFNAEEGLVRVDPAGRRH--LVEDWRYYEGKRAQAGKL 733

Query: 740 VPKGF 744
            P+GF
Sbjct: 734 APRGF 738


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/727 (52%), Positives = 524/727 (72%), Gaps = 7/727 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  A FKK 
Sbjct: 7   HIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTAGFKKC 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTE+R
Sbjct: 67  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTESR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T VA+ +L+G+DED+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN
Sbjct: 127 LTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AALALI  P  +  +LL ++ GPDFPTGG IVE R++I+ +Y  GRG FR+R++
Sbjct: 187 VGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSFRIRSK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 247 WDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTDIRLVLEP 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P +LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +VL RR
Sbjct: 307 KSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLLRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R+QA+DRR+EIL G L  YLN+DE+I I+R ED  K  +++ F LTE Q D++LN+R
Sbjct: 367 SANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSALIAAFDLTELQADSVLNMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I++E   L AEK+ +  LL +  Q+W  IA EI+++++ F   T LG+R
Sbjct: 427 LRSLRRLEEMEIRNEHARLSAEKQALHDLLENEGQRWKHIAGEIKDIQKTFGGGT-LGKR 485

Query: 496 RTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R+   +     +  ++ A+ +E++P+TV++S +GWIR+++ H  D  AL FKEGD L +A
Sbjct: 486 RSLLADAPV--EIDVEAALPVERDPLTVILSQKGWIRTVRGHGQDPQALKFKEGDDLGMA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +  H+ DR+ + +TDG+A+TL   +L  GRG G+ ++LLIDL++++DI+T F  D   + 
Sbjct: 544 VECHSNDRLCVFATDGRAFTLRVADLPRGRGDGQPLRLLIDLSNDEDIITMFPLDDARRR 603

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ SS G   IV ES + A  R G+  L +   E   + V   GDHV V+G+NR++L+F 
Sbjct: 604 LLASSTGRGMIVAESAMTAEKRTGRQVLNLKDRESALICVPAEGDHVLVLGQNRRMLVFP 663

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG GV LQ YKDGG+ D + F    G+ W D A     R+  DL  ++GKR 
Sbjct: 664 LDQLPEMARGLGVILQKYKDGGLKDAVVFTADAGVAWPDPA---RVRAFADLKDYVGKRA 720

Query: 735 GVGSLVP 741
            +G   P
Sbjct: 721 EMGKPAP 727


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/731 (52%), Positives = 519/731 (70%), Gaps = 8/731 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + L+   AFKKSAR+VG+VIG
Sbjct: 22  ALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAMRLLKLNPELAFKKSARVVGDVIG 81

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAA RYTE+R+T  A+L+L
Sbjct: 82  KYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAMRYTESRLTPAAQLLL 141

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+DE+AVDF++TY+  D EPVV  S FPNLL NG+SGIAVGMATSIP HN  E  +A +
Sbjct: 142 EGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSSGIAVGMATSIPPHNAAETIDACI 201

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI+N   +   L++ + GPDFPTGG IVE  +SI+++Y  GRGGFR+R +W  E++ RG
Sbjct: 202 HLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILKAYETGRGGFRMRCKWEKEDLPRG 261

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W IVVTEIPYQVQKS+LIE++AELI  K+ PLL+D+ DESAED+R+VL P+N+ +DPD+
Sbjct: 262 LWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDVMDESAEDIRVVLVPRNKLVDPDV 321

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LM S++ +SD+E+RF LNMNVL    VP+VM L  +L+ +LAHR+EV+ RR+  R+  I+
Sbjct: 322 LMASLYKMSDLESRFSLNMNVLDHN-VPRVMGLKQVLQCYLAHRQEVIVRRAQHRLDKIE 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+ IL+G L AYLNIDE+I IIR ED PK  ++  F L+E Q DAILN+RLR+LRKLEE
Sbjct: 381 ARLHILEGYLKAYLNIDEVIRIIRYEDHPKEELMKAFKLSEIQTDAILNMRLRALRKLEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E D L  E++K+  L+ S  +QW ++  +++  +E+F   +DLGRRR+ F     
Sbjct: 441 IEIQGEHDKLTQERDKLVQLIGSEARQWTEVKRQLKIAREVFDPESDLGRRRSKFGVAVE 500

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            D     +AMI KEPITV++S  GWIR+LK H+  +  L FK+GD L   L   TTD+++
Sbjct: 501 IDADAALEAMIPKEPITVILSKMGWIRALKGHNQAMDKLKFKDGDELAFTLECQTTDKVV 560

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           LL++ GKA+T  A  L SGRGHGE I+L IDL  +++I+      +  + +V S+ G  F
Sbjct: 561 LLASGGKAFTFAADKLPSGRGHGEPIRLSIDLPEDEEIIATITPKTGYRRVVASTAGYGF 620

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +V E E+++  R GK               +V GD VAV+G+N+K+L F ++++PEM+RG
Sbjct: 621 VVNEEELVSQKRGGKVIQNPPDGATFAFCPRVEGDMVAVIGDNKKILFFPLEELPEMARG 680

Query: 685 KGVRLQSYKDGG-----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           KGV+LQ+YK  G     + D+  F   +G  W D+ GR  N S N+   WLGKR   G L
Sbjct: 681 KGVKLQNYKQSGLINEQLMDICTFDSEDGFFWKDTGGR--NISLNEWRDWLGKRAAAGKL 738

Query: 740 VPKGFPRSGKF 750
            PKGF R+GKF
Sbjct: 739 APKGFNRTGKF 749


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/783 (50%), Positives = 531/783 (67%), Gaps = 40/783 (5%)

Query: 4   DNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           D I + N   +     VS  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 3   DTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 63  RELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L G++EDAVDFRD Y+   +EPVV P++FPNLLANG+S
Sbjct: 123 DGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGGIIVE  ESI +
Sbjct: 183 GIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESIAQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D+
Sbjct: 243 AYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADV 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+D+R++L P+ +++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 303 RDESADDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
           + +L HR+EVL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++   
Sbjct: 363 RAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREE 422

Query: 419 -------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q +AILN+RLRSLR+LEE ++  E D L+AE+ 
Sbjct: 423 WGIDHPRALNEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAERA 482

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           +I+ LL     QW +I+ +++E K+ F K    G RRT F E    ++  L +AMIE+EP
Sbjct: 483 EIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVPL-EAMIEREP 541

Query: 520 ITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           ITVV S  GW+R++  H +DL+  L FK+GD  +   HA TTD++L+ +++G+ YT+ A 
Sbjct: 542 ITVVCSQMGWVRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAA 600

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +  +IV   ++    KLLV S+ GN F+V E+E++A TR G
Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPERKLLVASTAGNGFVVPETEVVAQTRTG 660

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693
           K  L V  +E+  + V V GDHVAVV +N K L+F +D++PEM RGKGVRLQ Y      
Sbjct: 661 KQVLNVRDDERALICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGRGKGVRLQKYNMARGK 720

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DGG+SDV  F   EGL W  S G    R E DL  WL KR  VG   P GFPRS
Sbjct: 721 QGALELDGGLSDVTTFTWAEGLKW--SMGGDKTRHETDLSQWLAKRASVGKRPPYGFPRS 778

Query: 748 GKF 750
            KF
Sbjct: 779 YKF 781


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/763 (52%), Positives = 524/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G+
Sbjct: 22  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSNGGFLKSAKISGD 81

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 82  TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 141

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G+ EDAVDFRD Y+   +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ +
Sbjct: 142 AMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 201

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  GRG FR+RA+  VE++
Sbjct: 202 ACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRAKHEVEDL 261

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESAED+RI+L PK++++D
Sbjct: 262 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 321

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD+LM  +F  SD+ETRF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM 
Sbjct: 322 PDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 381

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422
            ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++           FS          
Sbjct: 382 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREDWGQDHPRAFSEAEYVSPAKG 441

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  +  LL S + QW +I  ++
Sbjct: 442 TGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWTRITEQL 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           RE K+ F K  + G RRT F E    ++  L +AMI+KEPITVV S  GW+R++  H +D
Sbjct: 502 RETKKQFGKDYEGGARRTLFAEAGEVEEVPL-EAMIDKEPITVVCSQMGWVRAMTGH-ID 559

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           LS  L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL  GRG GE ++L++DL +
Sbjct: 560 LSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPN 619

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   +LLV S  GN FI  E EI+A TR GK  L V  +++ K+ + V G
Sbjct: 620 EAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDDRAKICIPVQG 679

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+FS++++PE+SRGKGVRLQ Y            DGG+SDV  F   +
Sbjct: 680 DHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQGSLELDGGLSDVTTFNWDD 739

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GLTW    G++  R E DL  WLGKR GVG   P GFPR+ KF
Sbjct: 740 GLTWEMGGGKT--RHETDLGQWLGKRAGVGKRPPYGFPRNYKF 780


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/752 (50%), Positives = 526/752 (69%), Gaps = 13/752 (1%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D  +   T++EE +       AL  RYLAYALSTI  RA+PD+RDG KPVHRRI++AM +
Sbjct: 10  DRPAGPETIIEEPMGE-----ALSRRYLAYALSTITARALPDIRDGLKPVHRRILYAMRQ 64

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           M L  G +++KSA++ G+V+G  HPHGDQ++YD++VRL Q F  R PLI GQGNFGNIDG
Sbjct: 65  MRLGSGGSYRKSAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFGNIDG 124

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTE R+T+ AEL+L+G+D D VDFR+TY+ E  EPVV P+ FP+LLANG+SGI
Sbjct: 125 DNAAAMRYTECRLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANGSSGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HNV E+ +A L LI  P    E LL Y+ GPD PTGG+ +ES++ + E+Y
Sbjct: 185 AVGMATNIPPHNVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDLAEAY 244

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGGFR+RARW  E++GRG + IVVTEIPYQVQKS+L+E+IA+LI  K++P+L D+RD
Sbjct: 245 ATGRGGFRIRARWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLTDVRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAED+R+VL PK  SLDP+ +M +IF L+D+ETR  LN+NV+     P V  L   L+ 
Sbjct: 305 ESAEDIRLVLEPKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLRDCLQA 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +L HRR+VL R + +R+  I  R+EIL G LIAYLN+DE+I IIR ED PK  +++ F L
Sbjct: 365 FLDHRRDVLLRGTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKAELMATFDL 424

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q +AILN+RLRSLRKLEE ++K E  +L AE++ + +LL S   QW +IA +++E +
Sbjct: 425 SEIQTEAILNMRLRSLRKLEEMELKREHKDLKAEQKDLQALLKSEDIQWERIAGQLKETR 484

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F   +DLGRRRT   +    ++  L + +IEKEP+TVVIS +GW+R+LK H  D +++
Sbjct: 485 KSFDPRSDLGRRRTALSDAPITEEVDLDE-LIEKEPVTVVISEKGWVRALKGHVEDKASI 543

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            +K+GD  +  L A TTD+++L+ST+G+ + L   +L  GRGHGE  +L++DL +  D++
Sbjct: 544 KYKDGDQGRFVLPAMTTDKVILVSTNGRFFALDVKDLPGGRGHGEPFRLMVDLTNEHDLI 603

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----- 658
             F+Y     LL+ SS G+   V E +++A TRKGK  L V++  + ++   +T      
Sbjct: 604 DVFLYQGDRTLLLASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAAPGPN 663

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D++A +G NRKLLIF    +P M +GKGV LQ   +G + D  CF   EGLTW D AGR 
Sbjct: 664 DYLATIGSNRKLLIFPAGDVPVMVKGKGVVLQKITNGTLVDAKCFSPEEGLTWTDRAGR- 722

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +S  +   W+GKR   G L PKGFPR+ +F
Sbjct: 723 -QQSAEEWKEWVGKRAQAGKLPPKGFPRANRF 753


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/755 (51%), Positives = 530/755 (70%), Gaps = 28/755 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L  G  F+KSA+I G
Sbjct: 17  TLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASGGGFRKSAKIAG 76

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGDS AA RYTEARMT  A
Sbjct: 77  DVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDSPAASRYTEARMTAAA 136

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L G+DE+AVD+R  Y+    EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 137 EALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLDEVI 196

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A L LI  P    + LL +I GPDFPTGG+IVE  E+I ++YR GRG FR+RA+W +E+
Sbjct: 197 SACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQAYRTGRGAFRLRAKWEIED 256

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W I+VTEIPYQVQKS+LIE++AELI  K++P L D+RDESA+DVRIV+ P+ R++
Sbjct: 257 LGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADVRDESADDVRIVIEPRVRTI 316

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P++LM  +F  S++E RF +NMNVL  G  P+V  L  +L+ +L HRREVL RR++ R+
Sbjct: 317 EPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVLRAFLDHRREVLQRRTTHRL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------------- 417
           + ID R+E+L G + AYLN+D +I IIR ++ PK  +                       
Sbjct: 377 EKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAALQAEDWGLKIPRAADESRYVSPLG 436

Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             V+   LTE Q DAILN+RLRSLR+LEE ++ +E D L AE+  + +L+   K QW++I
Sbjct: 437 RPVAAGGLTEVQADAILNMRLRSLRRLEEIELVNERDALQAERAGLHALMGDEKLQWSRI 496

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+++V++ F K++  G RRT F E        L +AMIE+EP+TV+ S+ GWIR++K 
Sbjct: 497 SDELKDVRKQFGKTSKGGARRTAFGEGKEVADVPL-EAMIEREPVTVICSDMGWIRAMKG 555

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H      + FK+GD  + A HA TTDR+L  +++G+ YT+ A NL  GRG GE ++L++D
Sbjct: 556 HIALDQEMKFKDGDKARFAFHAETTDRLLAFASNGRFYTVLAANLPGGRGTGEPLRLMVD 615

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L ++  IV   ++    KL++ SS G+ FIV E ++IA TR GK  L +S      +V  
Sbjct: 616 LPNDAQIVDLLIHRPGQKLILASSAGDGFIVAEDDVIAQTRAGKQVLNLSEGASALIVKP 675

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           V GDHVA VG+NRK+L+F++D++PEM+RGKGV+LQ +KDGG+SD++   + +GL+W +S 
Sbjct: 676 VQGDHVACVGDNRKMLVFALDELPEMARGKGVKLQKFKDGGLSDLVTLTLAQGLSWKESG 735

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GR+  RSE DL  WLGKR G G + P+GFPR  +F
Sbjct: 736 GRT--RSEPDLSEWLGKRAGTGRMAPRGFPRDNRF 768


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/783 (50%), Positives = 528/783 (67%), Gaps = 40/783 (5%)

Query: 4   DNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           D I + N    +N   ++  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 3   DTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 63  RELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L+G++EDAVDFRD Y+   +EPVV P++FPNLLANG+S
Sbjct: 123 DGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGG+IVE  E+I +
Sbjct: 183 GIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENIAQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+
Sbjct: 243 AYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+D+R++L P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 303 RDESADDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
           + +L HR+EVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK  ++   
Sbjct: 363 RAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRED 422

Query: 419 -------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 423 WGIDHVRATSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDELMLERA 482

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL     QW +IA ++RE K+ F K  + G RRT F E  + ++  L +AMI++EP
Sbjct: 483 NLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQVEEVPL-EAMIDREP 541

Query: 520 ITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           ITVV S  GWIR++  H +DL   L FK+GD  +   HA TTDR+L+ +++G+ YT+ A 
Sbjct: 542 ITVVCSQMGWIRAMTGH-IDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAA 600

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +   I+   ++    KLLV S  GN F+V E +++A TR G
Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAQIIDILIHKPGRKLLVASDAGNGFMVPEDDVLAQTRNG 660

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693
           K  L V   E   +   V GDHVAVV +N K L+F  +++PEM+RGKGVRLQ Y      
Sbjct: 661 KQVLNVKGGETAMICKPVDGDHVAVVSQNGKFLVFPTNELPEMTRGKGVRLQKYNMARGR 720

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DGG+SD+  F   EGL W  S G    R E D+  WL KR GVG   P GFPR 
Sbjct: 721 QGTLELDGGLSDITTFNWEEGLKW--SMGGDKTRHEADMTQWLAKRAGVGKKAPYGFPRD 778

Query: 748 GKF 750
            KF
Sbjct: 779 YKF 781


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/729 (53%), Positives = 533/729 (73%), Gaps = 7/729 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL+YALSTI  R++PD+RDG KPVHRR++ AMS++ L+     KKSAR+VG+VIG
Sbjct: 18  ALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPTTPPKKSARVVGDVIG 77

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD SVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA+ +L
Sbjct: 78  KFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAMRYTEARLTEVAKALL 137

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+DEDAVDFR TY+ +  EP V P+ FPNLLANG+SGIAVGMAT+IP HNV EIC+A  
Sbjct: 138 EGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMATNIPPHNVGEICDALR 197

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI + +  IE L+ ++ GPDFPTGG++VESR+++VE+YR GRG FR+RARW VE++ +G
Sbjct: 198 HLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGAFRLRARWEVEKLAQG 257

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           +W IVVTE+PYQVQK+RL+EKIAEL++AK++ LL+D+RDESAEDVR+VL PK+R++DP++
Sbjct: 258 TWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDVRLVLVPKSRNVDPEV 317

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LM S+F  +D+E RF LNMNVL    VP+VM L  +L+ +L HR EVL RRS+ R+  ID
Sbjct: 318 LMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRHEVLVRRSNHRLTQID 377

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+E+L G L AYLN+DE+I IIR ED+PK  ++  F+LT+ Q DAILN+RLR+LRKLEE
Sbjct: 378 HRLEVLGGYLAAYLNLDEVIRIIREEDEPKQELIRAFTLTDVQADAILNMRLRNLRKLEE 437

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E + L  EK  +  LL     +W +IA  + E+K+ F     LG+RRT   +   
Sbjct: 438 MEIRREHEALTGEKNGLLELLGDEALRWKRIAEGVAEIKKKFGTGA-LGKRRTDVADAPA 496

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDSLKIALHAHTTDR 562
             +  L  A++E+EP+TV+ S +GWIR+++ H  D  A  + +K+GD         TTD+
Sbjct: 497 VIEVPL-DALVEREPVTVICSAKGWIRTVRGHLTDAEAEDVKYKDGDERGFVERCETTDK 555

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+ +++GK +T+    L  GRG GE ++L+IDL ++ DIV  F +     LLVVS  G 
Sbjct: 556 LLVFASNGKFFTIGVDKLPRGRGFGEPVRLMIDLGNDVDIVDLFRHQPGRTLLVVSEDGR 615

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
            F VEE+E++A TR GK  L +   +  ++   V+GD VA++G NRK+L+F +DQ+P M+
Sbjct: 616 GFRVEEAEVLAQTRSGKQVLNLEDGKSARICQPVSGDTVAIIGNNRKMLVFPLDQVPVMT 675

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           RGKGV+LQ YKD  ++DV  F + EGL+W  +  R++N +  DL GW+G R G G + P 
Sbjct: 676 RGKGVQLQKYKDASVADVKTFTLAEGLSW-KNGERNFNVT--DLTGWMGDRAGQGKMPPN 732

Query: 743 GFPRSGKFL 751
           GFP++ +F+
Sbjct: 733 GFPKNNRFM 741


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/737 (51%), Positives = 537/737 (72%), Gaps = 4/737 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FRVR
Sbjct: 183 HNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 ARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ ++ 
Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ K 
Sbjct: 483 ARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPDHL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL+F
Sbjct: 602 LLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W +S G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW-NSGGKV--KLEKNIIAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKF 750
           G  G L P GFP++ +F
Sbjct: 719 GSTGKLPPMGFPKNNRF 735


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/737 (51%), Positives = 537/737 (72%), Gaps = 4/737 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FRVR
Sbjct: 183 HNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 ARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ ++ 
Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ K 
Sbjct: 483 ARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPDHL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL+F
Sbjct: 602 LLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W +S G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW-NSGGKV--KLEKNIIAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKF 750
           G  G L P GFP++ +F
Sbjct: 719 GSTGKLPPMGFPKNNRF 735


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/766 (51%), Positives = 518/766 (67%), Gaps = 38/766 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I
Sbjct: 20  AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKI 79

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT 
Sbjct: 80  SGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTI 139

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VAE +L+G+DEDAVDFRD Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E
Sbjct: 140 VAEALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANGASGIAVGMATNIPPHNIAE 199

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A L LI  P+   + LL Y+ GPDFPTGG+IVE  ESI ++YR GRG FR+R ++ +
Sbjct: 200 LCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESIAQAYRTGRGSFRLRCKYEI 259

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E++GRG W IVVTEIPYQVQKS+LIEK+AELI  K+IP+L D+RDESA+D+R++L P+++
Sbjct: 260 EDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILGDVRDESADDIRLILEPRSK 319

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HR+EVL RRS  
Sbjct: 320 NVDPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRH 379

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------- 418
           RM  ID R+E+L+G ++A+LN+D +I IIR +D PK  ++                    
Sbjct: 380 RMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRENWGIDHVRATSEADYVSP 439

Query: 419 --SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+  ++ LL     QW  IA
Sbjct: 440 KPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDALMEERAGLEDLLADEGLQWASIA 499

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            +++E K+ F K  + G RRT F E    ++  L +AMI++EPITVV S  GWIR++  H
Sbjct: 500 EQLKETKKKFGKDYEGGARRTRFAEAGAVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH 558

Query: 537 SVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            +DL+  L FK+GD  +   HA TTDR+L+ +++G+ YT+ A NL  GRG GE ++L++D
Sbjct: 559 -IDLNRELKFKDGDGPRFIFHAETTDRLLIFASNGRVYTVSAANLPGGRGMGEPLRLMVD 617

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L +   IV   ++    KLLV S  GN FIV E E++A TR GK  L V  +E+  +   
Sbjct: 618 LPNEAQIVDILIHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKP 677

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFK 704
           V GDHVAVV +N K L+F + ++PEM+RGKGVRLQ Y            DGG+SD+  F 
Sbjct: 678 VAGDHVAVVSQNGKFLVFPVSELPEMTRGKGVRLQKYNMARGRQGTLELDGGLSDLTTFN 737

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             EGL W  S G    R E D+  WL KR  VG   P GFPR  KF
Sbjct: 738 WEEGLKW--SMGGDKTRHEPDMTPWLAKRASVGKKPPYGFPRDYKF 781


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/763 (51%), Positives = 522/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G+
Sbjct: 23  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGD 82

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE
Sbjct: 83  TMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 143 AMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGSSGIAVGMATNIPPHNISELID 202

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++YR GRG FR+RA+  +E++
Sbjct: 203 ACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDL 262

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESAED+RI+L PK++++D
Sbjct: 263 GRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 322

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM 
Sbjct: 323 PEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422
            ID R+E+L G +IA+LN+D +I IIR +D PK  ++           F+          
Sbjct: 383 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAALMRENWDREHPRAFTEAEYVTPAAG 442

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  +  LL+S   QW +I  ++
Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLAELLDSEDLQWKKITEQL 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           RE K+ F K  + G RRT F E    +   L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 503 RETKKQFGKDYEGGSRRTQFAEAGEVEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           L+  L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL  GRG GE ++L++DL +
Sbjct: 561 LNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV  F+++   +LLV S  GN F+  E EI+A TR GK  L V  +E+ K+ + V+G
Sbjct: 621 EVEIVDLFIHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQVLNVKDDERAKICIPVSG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+FSI+++PE++RGKGVRLQ Y            DGG++DV  F   E
Sbjct: 681 DHVAVVSENGKFLVFSIEEMPELTRGKGVRLQKYNMARGRQGSLELDGGLADVTTFNWDE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W    G++  R E DL  WLGKR GVG   P GFP+  KF
Sbjct: 741 GLQWEMGGGKT--RHETDLSQWLGKRAGVGKRPPYGFPKDYKF 781


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/781 (49%), Positives = 535/781 (68%), Gaps = 43/781 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +S+T +  N    +LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AMS + L 
Sbjct: 4   DSDTGLGPNDVTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLS 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ A
Sbjct: 64  PSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT  AE +L+G+ ED+VDFRD Y+   +EP V P+ FPNLLANG+SGIAVGM
Sbjct: 124 ASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSSGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG IVE  E+I E+YR GR
Sbjct: 184 ATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAEAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G FR+RA+W VE++GRG+W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D+RDESA+
Sbjct: 244 GSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADVRDESAD 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D+R+VL P+ +++DP+++M  +F  SD+ETRF LNMNVL  G  P+V  L  +L+ +L H
Sbjct: 304 DIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFLEH 363

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------- 418
           RR+VL RRS +R++ ID R+E+L+G +IA+L++D +I IIR +D PK  ++         
Sbjct: 364 RRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKALMIEDWAQDHV 423

Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                               SL+E Q +AILN+RLRSLR+LEE ++ +E D L+ E+  I
Sbjct: 424 RATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERDALMEERAGI 483

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL S   QW +IA ++RE ++IF + ++ G RRT F E +   +  L +AMIE+EPIT
Sbjct: 484 EDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEVVEVPL-EAMIEREPIT 542

Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           VV S  GW+R++  H +DL+  L FK+GD  +   HA TTD++L+   +G+ YT+ A NL
Sbjct: 543 VVCSQMGWVRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDKLLVFGANGRFYTVGAANL 601

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L+IDL ++ +IV   ++    KLLV S++GN F+V E E++A TR GK 
Sbjct: 602 PGGRGMGEPLRLMIDLPNDVEIVDFLIHKPGEKLLVASAEGNGFVVPEEEVVAQTRSGKQ 661

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +   K+  +V GDHVAVV EN K L+F + ++PEM+RGKGVR+Q YK       
Sbjct: 662 VLNV-KDTIAKVCHRVVGDHVAVVSENAKFLVFEVGELPEMNRGKGVRIQKYKKASGRQG 720

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SD+  F   +GL+W    G++  R+E D+  W G R GVG   P GFP++ +
Sbjct: 721 MLELDGGLSDITTFTWDDGLSWAMGGGKT--RTEPDMTDWKGARAGVGKRPPYGFPKNNR 778

Query: 750 F 750
           F
Sbjct: 779 F 779


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/742 (50%), Positives = 531/742 (71%), Gaps = 18/742 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PDLRDG KPVHRR++ AM ++ L   +A+KKSAR+VGEV+G
Sbjct: 25  ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLSPDSAYKKSARVVGEVLG 84

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VRLAQPF  RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+ A  ++
Sbjct: 85  KYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGNIDGDNAAAARYTEARLTRTAISLM 144

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DE  VDF  TYN E+ EPV+FP  FPNLLANG SGIAVGMAT+IPSHNV E+ EA L
Sbjct: 145 AGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGASGIAVGMATNIPSHNVDEVIEATL 204

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256
            +I+NP +   +L++ + GPD  TGG+IV+S E+I  +Y  GRG FR+RAR+        
Sbjct: 205 EVIENPAVEHARLMQIMQGPDLATGGLIVDSPETISAAYETGRGSFRIRARFHAAEAESA 264

Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E +G G W ++++EIPYQV K +LIE+IA++I  K++P+LED+RDES E +RI
Sbjct: 265 ADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIAQVIADKKVPILEDVRDESDEQIRI 324

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R++DP+LL ES++ L+D+ETRF LNMNVL   R P VM L  +L+ W+A + ++
Sbjct: 325 VLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLDATRTPMVMGLKELLQNWIASQIDI 384

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RR+  R+  I  R+E+L+G +IA+LN+D +I IIR ED+PKPVM++ F LT+ Q +AI
Sbjct: 385 LQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEIIRTEDEPKPVMMAEFGLTDRQTEAI 444

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE Q++ E D+LL E++++  LL S  +Q  ++  ++  +++ + K T 
Sbjct: 445 LNMRLRSLRKLEEMQLRQEKDDLLKEQDELQKLLESPVRQRTRLKRDLNALRKEYGKDTA 504

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDS 550
           LG RRTT  E     + ++  AMIEKEP TV++S RGWIR+ K H+ DLS    FKEGD 
Sbjct: 505 LGARRTTIDEAEPTVEFSM-DAMIEKEPTTVILSARGWIRAAKGHA-DLSQEWKFKEGDE 562

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L  A HA TTD++L+ + DG+ YTL A  L   RG GE ++ ++D++++  IV A+ +  
Sbjct: 563 LAFAFHAQTTDKLLIATDDGRFYTLGADKLPGARGFGEPVRTMVDIDNSAHIVFAWAHKP 622

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR 668
             +LL+ S+ G  F+++  +++A TRKG+  + +  + K+  V  +    DHVAVVG+NR
Sbjct: 623 GERLLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGDAKLARVAHIGEGHDHVAVVGDNR 682

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KL++F+++++PEMSRG+GV+LQ Y+DGG++DV  F++ EGL+W         R+E ++  
Sbjct: 683 KLVVFNLEEMPEMSRGQGVQLQRYRDGGMADVTTFRLEEGLSWQMGGTGERTRTEMEMWQ 742

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W   RGG G + P+GFPR  +F
Sbjct: 743 WKVARGGAGRMPPQGFPRDNRF 764


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/720 (52%), Positives = 510/720 (70%), Gaps = 8/720 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AM  M L+  AA +KSA++VGEV+G
Sbjct: 21  ALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSAKVVGEVMG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGDQS+YD+LVR+AQ F QRYP++ GQGNFGNIDGDSAAA RYTE +MT  A L+L
Sbjct: 81  NFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRYTECKMTTAAMLLL 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DE+AVDFR TY+ +D EPVV P+ FPNLLANG +GIAVGMATSIP HNV E+ +A  
Sbjct: 141 DGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNVAELIDACK 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI  P      L+  I GPDFPTGGI VE RE+I E+Y  GRG  RVRAR+ VE++GRG
Sbjct: 201 LLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARYEVEDLGRG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           +W I+V+EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E+VR++L PK R++DP++
Sbjct: 261 AWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEEVRLILEPKTRNIDPEV 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F +SD+ETRF  NMNVL     P+VM L  IL  +L HRREVL R+S +R+  I+
Sbjct: 321 LMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQSQWRLDKIE 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ +L GL+IA+LN+DE+I IIR ++ PK  +++RF LTE QVD IL+ RLR L +LEE
Sbjct: 381 KRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMARFELTEVQVDYILDTRLRQLARLEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             IK E D L  E++ + SLL S K+QW +I  ++ EV++       L  RRTTF E  +
Sbjct: 441 MAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQL-----LSARRTTFAEAPQ 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             +    ++ + KE +TV++S RGWIR+ K    D S L FKEGD+L   +  + TD++L
Sbjct: 496 GVEVAAIESYLPKEALTVILSERGWIRATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLL 555

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++++DG+ +TL    L SGRGHGE +QL++++  N  IV  F++    K L+VS  G  F
Sbjct: 556 IMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMFTPGAKRLMVSKNGYGF 615

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           ++ E + + N + GK+ L     E   + + VTGDHV ++GEN K+L++ + ++PEM+RG
Sbjct: 616 VMNEEDAVGNKKAGKSVLNADGTEAF-VALPVTGDHVVILGENNKVLVYPVSELPEMARG 674

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGV+LQ YKDGG+ D+  F     + W D +G++  R   D   ++GKR  VG + P+G 
Sbjct: 675 KGVKLQGYKDGGVKDIAIFDQAGPVQWFDGSGKA--RDFKDWKDFVGKRASVGKMAPRGL 732


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/739 (50%), Positives = 533/739 (72%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F+ RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI N
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAIFN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EIR V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKVVKKEIRTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/763 (51%), Positives = 522/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G+
Sbjct: 23  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGD 82

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 83  TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 142

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L G++E+AVDFRD Y+   +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ +
Sbjct: 143 AMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 202

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  GRG FR+R +  VE++
Sbjct: 203 ACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCKHEVEDL 262

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESA+D+RIVL PK++++D
Sbjct: 263 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESADDIRIVLEPKSKNVD 322

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM+
Sbjct: 323 PEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRME 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------------- 420
            ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++                       
Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALIREDWSKDHPRALTEADYITPARG 442

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE Q +AILN+RLRSLRKLEE ++  E D L  E+  +  LL S + QW++I+ ++
Sbjct: 443 VGELTEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLASEELQWSRISEQL 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +E K+ F K  + G RRT F E   A+   L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 503 KETKKQFGKDYEGGARRTLFAEAGEAEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           LS  L FK+GD+ +   HA TTD++L+  ++G+ YTL A NL  GRG GE ++L++DL +
Sbjct: 561 LSRELKFKDGDAPRFIFHAETTDKLLVFGSNGRFYTLSAANLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   +LLV S  GN FI  E EI+A TR GK  L V  +E+ K+ + V G
Sbjct: 621 EAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDERAKVCIPVEG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+F+++++PE++RGKGVRLQ Y            DGG+SD+  F+  E
Sbjct: 681 DHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDITTFRWDE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W    G++  R   DL  WLGKR  VG   P GFPRS KF
Sbjct: 741 GLKWEMGGGKT--RHAADLSEWLGKRASVGKRPPHGFPRSYKF 781


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/739 (50%), Positives = 534/739 (72%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L++  +D+D VDFR TY++ D EP++ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LID+P   I  ++ +I GPDFPTGGII++  E I  +Y  GRG FRVR
Sbjct: 183 HNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  E +  G++ IVVTEIPYQVQKS+LIE++A L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ ++ 
Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EIL GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE++I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEHEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQMQFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A + KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 DRRTSFEEVTLTNQVVDITAFVTKEPITIICSKMGWVRSLKGHNTDLSNIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNIPKGKGTGESIKLLVDIGNN-DITNILVHKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E+IA T+ GK  + V         + V GD VA +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVIAQTKTGKQVMNVPDGHACIACLHVAGDAVACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           ++D+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LG+R
Sbjct: 662 NVDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLCW-NNNGKV--KLEKNIIAFLGQR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/746 (51%), Positives = 519/746 (69%), Gaps = 22/746 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71
           AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + ++ G A             
Sbjct: 44  ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASADVLTANPARNT 103

Query: 72  --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R PL+ GQGNFGNIDGD+AAA 
Sbjct: 104 TAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 163

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+TQ A  ++ G+DE  VDFR TYN ED EP VFP  FPNLLANG SGIAVGMAT
Sbjct: 164 RYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFPGLFPNLLANGASGIAVGMAT 223

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP HNV E+ +AA  LID+P+     L++ + GPDFPTGG++V+S   I E+Y  GRG 
Sbjct: 224 SIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPTGGVLVDSPSIIAEAYATGRGA 283

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           FR RARW  E+ GRG+W  VVTEIPYQVQKS+LIE+IA LI  K++P+L D+RDES  D+
Sbjct: 284 FRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAALINDKKLPILADVRDESDADI 343

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P+ R++D  +LM+S+F L+D+E RFPLN+NVL     P+V+ L  +L EWL H+ 
Sbjct: 344 RIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDSTHTPRVLGLKPLLVEWLRHQI 403

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +VL RR+  R+  I  RVE+L G +IAYLN+D +I IIR ED+PK VM+  F LT+ Q +
Sbjct: 404 DVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMVEFGLTDRQAE 463

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AILN+RLRSLRKLEE +++ E D LL E+++++ L+ S  +Q  ++  ++  +++ +   
Sbjct: 464 AILNMRLRSLRKLEEMELRREHDELLKERDELEKLVESPARQRTRLKKDLAALRKRYGPE 523

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
           TDLGRRRT   E + A +  L +AMIE+EPITV++S RGWIR++  H  DL+A   L FK
Sbjct: 524 TDLGRRRTLVEEAAPAREIPL-EAMIEREPITVILSERGWIRAMSGHR-DLAAADTLKFK 581

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD  + A HA+TTD++LL ++ G+ +TL +  L  GRG G+ ++ L+D+++   IV   
Sbjct: 582 EGDGPQFAFHAYTTDKLLLATSTGRVFTLSSDKLPGGRGFGDPVRSLVDMDNEGAIVALM 641

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVV 664
              +   LL+ SS G  FI   ++I+A TRKGK  + V +  ++ +V  VT   D +AV+
Sbjct: 642 PARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRAGARLAVVHPVTADADSIAVI 701

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F+I ++P M+RG+GV+LQ Y+DGG+SD I F++ +GLTW         R+E 
Sbjct: 702 GENRKLLVFAISEMPRMARGQGVQLQRYRDGGLSDAIAFRLADGLTWAMGGDSGRTRNET 761

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D+  W   RG  G + P GFPR  +F
Sbjct: 762 DMTPWKVARGAAGRMPPNGFPRDNRF 787


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/763 (51%), Positives = 519/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS + L     F KSA+I G+
Sbjct: 23  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSSSGGFLKSAKISGD 82

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE
Sbjct: 83  TMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG SGIAVGMAT+IP HN+ E+ +
Sbjct: 143 AMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGASGIAVGMATNIPPHNISELID 202

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++YR GRG FR+RA+  +E++
Sbjct: 203 ACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDL 262

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESAED+RI+L PK++++D
Sbjct: 263 GRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 322

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +   SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM 
Sbjct: 323 PEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422
            ID R+E+L G +IA+LN+D +I IIR ++ PK  ++           F+          
Sbjct: 383 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALMRENWDREHPRAFTEAEYVTPAAG 442

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  +  LL S + QW +I  ++
Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWKKITEQL 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           RE K+ F K+ + G RRT F E    +   L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 503 RETKKQFGKNYEGGARRTQFAEAGEIEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           LS  L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL  GRG GE ++L++DL +
Sbjct: 561 LSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV  F+++   +LLV S  GN F+  E +I+A TR GK  L V  +E+ K+ + V G
Sbjct: 621 EVEIVDLFIHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQVLNVKDDERAKICIPVAG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+F+I+++PE++RGKGVRLQ Y            DGG++DV  F   E
Sbjct: 681 DHVAVVSENGKFLVFAIEEMPELTRGKGVRLQKYNMARGRQGALELDGGLADVTTFNWDE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W    G+   R E DL  WLGKR G+G   P GFP+  KF
Sbjct: 741 GLHWEMGGGKI--RHETDLTQWLGKRAGIGKRPPYGFPKDYKF 781


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/795 (49%), Positives = 528/795 (66%), Gaps = 67/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM  + L     F KSA+I
Sbjct: 16  AEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAMRRLRLSSNGGFLKSAKI 75

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT 
Sbjct: 76  SGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTI 135

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L G+DE++VDFR  Y+    EP V P+ +PNLLANG+SGIAVGMAT+IP HN+ E
Sbjct: 136 MAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIAVGMATNIPPHNIGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L LI  P    + LL+Y+ GPDFPTGG+IVE R++I ++YR GRG  R+RA+W V
Sbjct: 196 LIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQAYRTGRGSIRLRAKWEV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIRDESAED+R+VL PK++
Sbjct: 256 EDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIRDESAEDIRMVLEPKSK 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++DPDLLM  +F  SD+ETRF LNMNVL  G  P+V  L  +L+ +L  RR+VL RR+  
Sbjct: 316 NVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRRDVLCRRARH 375

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEII----------AIIRNEDKPKPVMVS--------- 419
           RM  ID R+E+L+GL+IA+LN+D +I          A +  ED  KP   +         
Sbjct: 376 RMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWSKPHQATIARATDERD 435

Query: 420 --------------------------------------RFS-----LTENQVDAILNLRL 436
                                                 RF      L++ Q +AILN+RL
Sbjct: 436 YRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGGRSEGLSDVQAEAILNMRL 495

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLR+LEE ++ +E D L+ E+  ++ LL S   QW +++ ++REVK+ F+K  D G R 
Sbjct: 496 RSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQLREVKKAFAKDLDRGARL 555

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIAL 555
           TTF E   A+   L+ AMIE+EPITVV S  GWIR++  H +DL+  L FK+GD  +   
Sbjct: 556 TTFAEAGEAEDVPLE-AMIEREPITVVCSQMGWIRAMTGH-IDLNRELKFKDGDGPRFIF 613

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD++L++ ++G+ YTL A NL  GRG GE ++L++DL +  +I    V+    KLL
Sbjct: 614 HAETTDKLLVVGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEAEIHDLLVHTPGRKLL 673

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V SS G+ FIV E++++A TR GK  L V    K ++   VTGD VAVVGENRK+L+F +
Sbjct: 674 VASSAGDGFIVPENDVLAQTRSGKQVLNVKDGVKTQVCKPVTGDAVAVVGENRKVLVFML 733

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W D AGR+  R+E  L  W+GKR G
Sbjct: 734 DELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWKDPAGRT--RTEAALDEWIGKRAG 791

Query: 736 VGSLVPKGFPRSGKF 750
            G + P+GFPR   F
Sbjct: 792 SGRMAPRGFPRDNTF 806


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/811 (48%), Positives = 534/811 (65%), Gaps = 68/811 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++I +   +   NV A  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MNDIVDDPNMNPRNV-AEPLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+DED+VDFR  Y+    EP V P+ +PNLLANG SG
Sbjct: 120 GDNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGASG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   E LL Y+ GPDFPTGG+IVE RE+I E+
Sbjct: 180 IAVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA+W VE++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIR
Sbjct: 240 YRTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAEDVR+VL PK +++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            +L  RR+VL RRS  RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  +     
Sbjct: 360 AFLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDW 419

Query: 418 -------VSRFSLTENQVDAILNLRLRSL------------------------------- 439
                  +SR +   + V  +L + +++L                               
Sbjct: 420 SKPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGRS 479

Query: 440 -------------------RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
                              R+LEE ++ +E D L+ E+  ++ LL S + QW +I+ ++R
Sbjct: 480 EGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRISEQLR 539

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K  D G R T+F E   A++  L +AMIE+EPITVV S  GWIR++  H +DL
Sbjct: 540 EVKKSFAKDLDRGARLTSFAEAGEAEEVPL-EAMIEREPITVVCSQMGWIRAMTGH-IDL 597

Query: 541 S-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  L FK+GD  +   HA TTD++L+  T+G+ YTL A +L  GRG GE ++L++DL + 
Sbjct: 598 NRELKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGGRGMGEPLRLMVDLPNE 657

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I+  F++    +LLV SS G+ F+V E+E++A TR GK  L V    K K+   V+GD
Sbjct: 658 AEILDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVKAKVCKPVSGD 717

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            VAVVGENRK+L+F  D++PEM RGKGVRLQ YKDGG+SDV  F + +GL+W D AGR+ 
Sbjct: 718 AVAVVGENRKVLVFMADELPEMGRGKGVRLQKYKDGGMSDVTTFTLTDGLSWRDPAGRT- 776

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W+GKR   G + P+GFPR   F
Sbjct: 777 -RTETNLEEWIGKRATSGRMAPRGFPRDNTF 806


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/763 (50%), Positives = 523/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS + L     F KSA+I G+
Sbjct: 23  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLTSTGGFLKSAKISGD 82

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE
Sbjct: 83  TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 142

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G+ E+AVDFRD Y+   +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ +
Sbjct: 143 AMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIGELID 202

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  GRG FR+R    VE++
Sbjct: 203 ACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYNTGRGSFRLRCTHEVEDL 262

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESAED+RIVL PK++++D
Sbjct: 263 GRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESAEDIRIVLEPKSKNVD 322

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM 
Sbjct: 323 PEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMD 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------------VS 419
            ID R+E+L+G +IA+LN+D +I IIR +D PK  +                      + 
Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENWSLDHPRAYTEADYVSPAIG 442

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  +  LL S   QW++IA ++
Sbjct: 443 AGELTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAGLVELLASEDLQWSRIAEQL 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ K+ F K+ + G RRT F E    ++  L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 503 KDTKKQFGKTYEGGPRRTRFAEAGEVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           L   L FK+GD  +   HA TTDR+L+ +++G+ YT+ A NL  GRG GE ++L++DL +
Sbjct: 561 LGRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   +LLV S  GN FI  E +I+A TR GK  L V  +++ K+ ++VTG
Sbjct: 621 EVEIVDILIHNPEGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDRAKICIRVTG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+F+++++PE++RGKGVRLQ Y            DGG+SDV  F   +
Sbjct: 681 DHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDVTTFNWDD 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G++W    G++  R E DL  WLGKR G+G   P GFPR+ KF
Sbjct: 741 GISWEMGGGKT--RHETDLGQWLGKRAGIGKRPPYGFPRNYKF 781


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/763 (50%), Positives = 522/763 (68%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G+
Sbjct: 22  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGD 81

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE
Sbjct: 82  TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 141

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G++ED+VDFRD Y+   +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ +
Sbjct: 142 AMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 201

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI +P    + LL+Y+ GPDFPTGGIIVE R++I ++YR GRG FR+R    VE++
Sbjct: 202 ACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNIAKAYRTGRGSFRLRCTHEVEDL 261

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L DIRDESAED+RIVL PK++++D
Sbjct: 262 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADIRDESAEDIRIVLEPKSKNVD 321

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD+LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS +RM 
Sbjct: 322 PDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLRRRSEYRMG 381

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419
            ID R+E+L G +IA+LN+D +I IIR ++ PK  ++                       
Sbjct: 382 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSALMRENWGLDHPRAYEESDYVTPAPG 441

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L+E Q +AILN+RLRSLR+LEE ++  E D L  E+  +  LL S   QW++I  ++
Sbjct: 442 EGELSEVQAEAILNMRLRSLRRLEEVELTKERDALREERAGLVELLGSDDLQWSKITEQL 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R  K+ F K    G RR+ F E    ++  L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 502 RATKKQFGKDYVGGARRSRFAEAGEVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 559

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           L+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A NL  GRG GE ++L++DL +
Sbjct: 560 LNRELKFKDGDGARFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVDLPN 619

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   KLLV SS GN FI  E +I+A TR GK  L V  +++ ++ + VTG
Sbjct: 620 EVEIVDILIHNPEGKLLVASSAGNGFICAEKDIVAQTRTGKQVLNVKDDDRAQICIPVTG 679

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVA+V EN K L+FS++++PE++RGKGVRLQ Y            DGG+SD+  F   E
Sbjct: 680 DHVAIVSENGKFLVFSVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDITTFNWDE 739

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G++W    G++  R E DL  WLGKR G+G   P GFPR+ KF
Sbjct: 740 GISWEMGGGKT--RHETDLSQWLGKRAGIGKRPPYGFPRNYKF 780


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAIMMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/741 (52%), Positives = 525/741 (70%), Gaps = 7/741 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H VDL    A+ FKEGD  
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +  
Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669
            KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRK
Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRK 666

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LL F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W
Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  RG  G L P GFP++ +F
Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/739 (50%), Positives = 536/739 (72%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L++  +++D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR+R
Sbjct: 183 HNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            + A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+ S   
Sbjct: 543 IIEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVHKSDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSIGKGFLVNSNEVMAQTKTGKQIMNVPDGHTCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLSW-NNNGKV--KLEKNIIAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GF ++ +F S
Sbjct: 719 GSTGKLPPMGFHKNNRFSS 737


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/741 (52%), Positives = 525/741 (70%), Gaps = 7/741 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H VDL    A+ FKEGD  
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +  
Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669
            KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRK
Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEGHDHIALIGENRK 666

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LL F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W
Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  RG  G L P GFP++ +F
Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/734 (50%), Positives = 520/734 (70%), Gaps = 5/734 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + FKK 
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VA  +L+G+D+D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+RAR
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRIRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L  WL HR +VL RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVLQRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++ILN+R
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E   L AE+  + +LL+S   +W +I  E++ +++ F     LG R
Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLDSEPLRWKKITEEVKAIRKAFGAGA-LGTR 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+      RA + +  +A +E+EP+T+++S +GW+++LK H +D +   FKEGD  ++A+
Sbjct: 487 RSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTTQKFKEGDGFRLAV 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      + L
Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+F +
Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGKR  
Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGKRAD 722

Query: 736 VGSLVPKGFPRSGK 749
           VG   P    R  K
Sbjct: 723 VGRPAPAWATRKPK 736


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/741 (52%), Positives = 524/741 (70%), Gaps = 7/741 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S  +I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551
           R+T   E + A KA    AMIE+EP+TVV+S RGWIR LK H VDL    A+ FKEGD  
Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +  
Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669
            KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRK
Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRK 666

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LL F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W
Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  RG  G L P GFP++ +F
Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/734 (50%), Positives = 520/734 (70%), Gaps = 5/734 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + FKK 
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VA  +L+G+D+D+VDFR TY+ E+ EPVV  + FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+RAR
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRIRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L+ WL HR +VL RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVLQRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++ILN+R
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E   L AE+  + +LL S   +W +I  E++ +++ F     LG R
Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLGSEPLRWKKITEEVKAIRKAFGAGA-LGTR 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+      RA + +  +A +E+EP+T+++S +GW+++LK H +D +A  FKEGD  ++A+
Sbjct: 487 RSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTAQKFKEGDGFRLAV 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      + L
Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+F +
Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGKR  
Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGKRAD 722

Query: 736 VGSLVPKGFPRSGK 749
           VG   P    R  K
Sbjct: 723 VGRPAPAWATRKPK 736


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/740 (50%), Positives = 535/740 (72%), Gaps = 5/740 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L++  +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+C+A + LID+ P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  RV
Sbjct: 183 HNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R++
Sbjct: 243 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ ++
Sbjct: 303 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AIL
Sbjct: 363 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAIL 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +
Sbjct: 423 NTRLRSLRKLEEQEIINEHGNLQKQQAILEEILNNPKELWKVVKKEIKAVQTKFGLNTVI 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K
Sbjct: 483 GARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEK 542

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY    
Sbjct: 543 FILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQ 601

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
            LL+ SS G  F+V  +E++A T+ GK  + +         + V GD +A +GE+RKLL+
Sbjct: 602 LLLLASSVGKGFLVNSNEVMAQTKTGKQIMNIPDGHACIACLPVNGDSIACIGESRKLLV 661

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGK
Sbjct: 662 FNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGK 718

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RG  G L P GFP++ +F S
Sbjct: 719 RGNTGKLPPMGFPKNNRFSS 738


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/720 (52%), Positives = 503/720 (69%), Gaps = 7/720 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+  AA +K A++VGEV+G
Sbjct: 21  ALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA RYTE ++T  A L+L
Sbjct: 81  GYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLL 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+D+D+VDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A  
Sbjct: 141 DGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQ 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L+D PE +  +L++ + GPDFPTGG+ VE   SI+++Y  GRGG R+RARW  E++GRG
Sbjct: 201 MLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETEDLGRG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W I+VTE+PYQVQKSRLIE +A+LI  K+ PLL D+RDESAED+R++L PKNR+++P++
Sbjct: 261 VWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAEDIRLILEPKNRTIEPEM 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HRREVL RRS +R+  ++
Sbjct: 321 LMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQWRIARVE 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ +L+GL I +LNIDE+I I+R E++PK V+++RF LTE Q D IL+ RLR L +LEE
Sbjct: 381 KRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTRLRQLARLEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             I+ E   L  E   + +L +S  +QW  I+ E+  V++       +  RRTT  +   
Sbjct: 441 MTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKAL-----ISPRRTTIADAVD 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
                  +A I +E ITV++S RGWIR+ K    D S L FKEGD L   + A+TTD++L
Sbjct: 496 TSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLL 555

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    +    KLL+ S  G  F
Sbjct: 556 VGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIASKAGYGF 615

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           I  E + +A  R GK  L       +++    T DHVA +GEN K LIF +D++PEM RG
Sbjct: 616 IAPEDDTLAQKRGGKQVLNGDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELPEMGRG 675

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGVRLQ++K GG++DV  F   +G  W D  GR   R+  D   WLGKR G G   P+G 
Sbjct: 676 KGVRLQNFKQGGLADVTVFNAEQGPEWADGGGR--RRNWPDWKDWLGKRAGAGRQGPRGL 733


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/741 (51%), Positives = 516/741 (69%), Gaps = 16/741 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PDLRDG KPVHRR++ AM ++ LD   AFKKSAR+VG+VIG
Sbjct: 22  ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLKLDPAQAFKKSARVVGDVIG 81

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD SVYD++VRLAQ +  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A  ++
Sbjct: 82  KYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTKTAIQLM 141

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DE  VDF  TYN E+ EP +FP  FPNLLANG+SGIAVGMAT+IPSHNV EI +A L
Sbjct: 142 SGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSSGIAVGMATNIPSHNVAEIIDATL 201

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257
            LIDNP     +L+E   GPD PTGG+IV+S   I  +Y  GRG  RVR R+        
Sbjct: 202 LLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISNAYETGRGAIRVRGRFSTGRDEAG 261

Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E++G G W +VV+EIPY VQK +LIE+IA+LI  K++P+LEDIRDES E +R+
Sbjct: 262 NWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQLIADKKLPILEDIRDESDEQIRL 321

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PK+R++DPDLL ES++ L+D+ETRF LN+NVL   R P V+ L  +L+EW+  + ++
Sbjct: 322 VLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDSRRTPGVLGLKLVLQEWVISQIDI 381

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  I  R+E+L+G +IAYLN+D II IIR ED+PKPVM++ F LT+ Q +AI
Sbjct: 382 LLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIRTEDEPKPVMMAEFELTDRQAEAI 441

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE +++ E D LLAE+E++  LL+S  +Q  ++  ++  +++ +++ T 
Sbjct: 442 LNMRLRSLRKLEEMELRKERDALLAEQEELQKLLDSPARQRTRLKRDLAALRKDYAEDTA 501

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LGRRRTT  E +   + ++  AMIEKEP+TV++S +GWIR+ K H        FKEGD  
Sbjct: 502 LGRRRTTIAEAAPTREFSM-DAMIEKEPVTVILSAKGWIRAAKGHVPLDGDFKFKEGDGP 560

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             ALH  TTD++L+   +G+ YTL A  L   RG GE I+ ++D++ +  IV+   Y   
Sbjct: 561 AFALHCQTTDKLLVAVDNGRFYTLGADKLPGARGFGEPIRTMVDIDPDAQIVSVLPYKPK 620

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRK 669
            +LL+ ++ G  F  E  E++A TRKG+  +      K+ +V ++    DHVAV+GENRK
Sbjct: 621 GQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPGVKLAVVREIAPEHDHVAVIGENRK 680

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L+IF++ ++P +++G+GV LQ YKDG +SDVI  ++ +GLTW         R E DLL W
Sbjct: 681 LVIFALSEVPLLAKGQGVTLQRYKDGEMSDVITLRLEDGLTWAMGGESGRTRVEKDLLPW 740

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
              RG  G L P GFPR  +F
Sbjct: 741 KVARGAAGRLPPNGFPRDNRF 761


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/753 (52%), Positives = 530/753 (70%), Gaps = 28/753 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G+
Sbjct: 22  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGD 81

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT  AE
Sbjct: 82  VMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAAE 141

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G++E+AVD+R+ Y+   +EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 142 ALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANGSSGIAVGMATNIPPHNIPELVD 201

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L LI  P    E L+E + GPDFPTGG+IVE +E+I+ +Y  GRG FR+R +W +E++
Sbjct: 202 ACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENILNAYATGRGSFRLRCKWEIEKL 261

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            RG W IVVTEIPYQVQKS+LIEKIAE+I  K+IP+L D+RDESA+DVR+V+ PK++++D
Sbjct: 262 DRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILADVRDESADDVRMVIEPKSKNVD 321

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  ++  SD+E RF +NMNVL  G  P+V  L  +L+ +L HRREVL RRS  RM 
Sbjct: 322 PEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEVLRAFLDHRREVLIRRSQHRMA 381

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418
            ID R+E+L+G ++A+LN+D +I IIR +D PK                       P + 
Sbjct: 382 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALIREDWSLTHKRAMDETDYLSPALR 441

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               L+E Q +AILN+RLRSLR+LEE ++  E   L+ E+ +++ LL+S   QW++I+ +
Sbjct: 442 DEEGLSEVQAEAILNMRLRSLRRLEELELLREQSALMEERAELEDLLDSDDLQWSRISEQ 501

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +RE ++ F K+   G RRT F E +  +   + +AMIE+EPIT+V S  GW+R+L  H V
Sbjct: 502 LRETRKQFGKNYKGGARRTLFAEAAEVEDVPI-EAMIEREPITIVCSKMGWVRALSGH-V 559

Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           DL+  L FK+GD  +   HA TTDR+L+  T+G+ YT+ A NL  GRG GE ++L++DL 
Sbjct: 560 DLARELKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSASNLPGGRGMGEPLRLMVDLP 619

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +  DIV  F++    KLLV SS G+ FIV E+++IA TR GK  L V      K+ + VT
Sbjct: 620 NEADIVDFFIHQPERKLLVASSAGDGFIVPEADVIAQTRTGKQVLNVKDGVMAKVCITVT 679

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           GDHVA VGENRK+L+F I+++PEM RGKGVRLQ YKDGG+SDV  F +  GL+W D AGR
Sbjct: 680 GDHVACVGENRKVLVFPIEELPEMGRGKGVRLQKYKDGGLSDVATFTMAGGLSWQDPAGR 739

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+E +L  W GKR   G + P+GFPR  +F
Sbjct: 740 T--RTETELAEWAGKRASAGRMAPRGFPRDNRF 770


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/744 (50%), Positives = 518/744 (69%), Gaps = 7/744 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E++V+      AL +RYL YALSTI  R++PD+RDG KPVHRR++ AM  + LD  + 
Sbjct: 7   LPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLRLDPASG 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGN+DGD+AAA RY
Sbjct: 67  YKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNVDGDNAAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T  A  ++ G+DE  VDFR TYN E+ EP +FP  FPNLLANG SGIAVGMATSI
Sbjct: 127 TEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGASGIAVGMATSI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV E+ +AA+ LID PE    +LL+++ GPDFPTGG++V+S  +I E+Y  GRG FR
Sbjct: 187 PPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAEAYATGRGAFR 246

Query: 252 VRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           VRA+   V+E G G W +VV++IPYQVQKS+LIE+IAELI  K++P+L D+RDES E++R
Sbjct: 247 VRAKIEKVDEKG-GGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADVRDESDEEIR 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL P++R++D D+LMES+F L+++E R  LN+NVL   R P VM L   L  WL H+ E
Sbjct: 306 IVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQALAAWLKHQFE 365

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS  R+  I  R+E+L G LI YLN+D +I IIR ED+PKPVM++ F LT+ Q +A
Sbjct: 366 VLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPKPVMMAEFGLTDRQAEA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLR+LEE ++  E   L AE +++++L+ S  +Q  ++  ++  ++E +   T
Sbjct: 426 ILNMRLRSLRRLEEMELTRERATLDAEGKELEALIASPARQRTRMKRDLAALRERYGPET 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFKEG 548
            LG RRT   E + A +  L +AM+E+EP+TV++S RGWIR++K H      +A+ FKEG
Sbjct: 486 ALGARRTLLSEAAPAREIPL-EAMVEREPVTVILSQRGWIRAMKGHLDEAAQAAVKFKEG 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A+ A TTDRILL +  G+ YTLPA  L  GRG GE ++L  D++ +  +      
Sbjct: 545 DGPAHAIRAQTTDRILLATDQGRFYTLPADKLPGGRGFGEPVRLFADIDADARVAALLAA 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGE 666
               +LL+ S  G  F+V+ +++ A TRKGK  + +    ++K+V  V  T D+VA +G+
Sbjct: 605 KPGAELLLASGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYVAAIGD 664

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRK++IF + ++P M+RG+GV +Q YKDGG+SD I F++ +GL+W         R+E DL
Sbjct: 665 NRKMVIFPLGELPRMARGQGVTIQRYKDGGLSDAISFRLDDGLSWTMGGDTGRTRTEADL 724

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
             W   RG  G + P GFPR  +F
Sbjct: 725 TPWRAARGAAGRMPPVGFPRDNRF 748


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/745 (50%), Positives = 516/745 (69%), Gaps = 20/745 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71
           AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + ++ G A             
Sbjct: 19  ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASPDVLVANPARNT 78

Query: 72  --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R PL+ GQGNFGNIDGD+AAA 
Sbjct: 79  TSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 138

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP  FPNLLANG +GIAVGMAT
Sbjct: 139 RYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGATGIAVGMAT 198

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP HNV E+ +AA  LIDNP+     L++ + GPDFPTGG++V+S   I E+Y  GRG 
Sbjct: 199 SIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGGVLVDSASIISEAYATGRGS 258

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI  +++P+L D+RDES E +
Sbjct: 259 FRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESDEQI 318

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P+ R++DPDLLM+S+F L+D+E RFPLN+NVL   R P+V+ L  +L EWL H+ 
Sbjct: 319 RIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKHQI 378

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR ED+PK VM++ F L + Q +
Sbjct: 379 DVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMAEFGLNDRQAE 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +Q  ++  ++ ++++ +S  
Sbjct: 439 AILNMRLRSLRKLEEMELRREHSELLKERDDLLKLVESPARQRTRLKKDLADLRKRYSPD 498

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKE 547
           +D GRRRT   E + A +  L +AMIEKEPITV++S RGWIR++  H    SA  L FKE
Sbjct: 499 SDFGRRRTLVEEAAPAREIPL-EAMIEKEPITVILSERGWIRAMSGHRDLASADTLKFKE 557

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD   IA HA TTD++LL +  G+ +TL A  L  GRG G+ ++ L+D++    IV    
Sbjct: 558 GDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMDGTGQIVALMP 617

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVG 665
             +  +LL+ SS G  F+   +++IA TRKGK  + V +  K+ +V  +    D VAVVG
Sbjct: 618 ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAADADSVAVVG 677

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W    G    R+E D
Sbjct: 678 ENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGGGSGRVRTEAD 737

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  W   RG  G + P GFPR  +F
Sbjct: 738 MTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/743 (49%), Positives = 517/743 (69%), Gaps = 18/743 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  M LD    +KKSAR+VG+VIG
Sbjct: 35  ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRAMRLDPSQGYKKSARVVGDVIG 94

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+VA  ++
Sbjct: 95  KFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNIDGDNAAAYRYTEARLTRVAVDLM 154

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           QG+DE  VDFR TYN ED EP + P  FPNLLANG SGIAVGMAT+IP HN  E+ +AAL
Sbjct: 155 QGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGASGIAVGMATNIPPHNAAEVIDAAL 214

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257
            LIDNP+  +  LL+++ GPDFPTGGI+ E+ E+I ++Y  GRG FRVRAR+        
Sbjct: 215 LLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQAYESGRGSFRVRARFSIGKDADG 274

Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E++  G+W +V++EIPY V K +LIE++A+LI  +++P+LED+RDESAED+RI
Sbjct: 275 KWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQLIADRKLPILEDVRDESAEDLRI 334

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PK+R++D ++L +S++ L+D+E+RF LN+NVL   R P+VM L  +L EWL H+  V
Sbjct: 335 VLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDATRTPKVMGLKQLLTEWLQHQIIV 394

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RR+  R+  ID R+E++ G +IA+LN+D II IIR ED+PKPVM++ F LT+ Q +AI
Sbjct: 395 LVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIRTEDEPKPVMIAEFELTDRQAEAI 454

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE ++K E  +L AE+E++  L+ S  +Q  ++  ++  ++ ++   T 
Sbjct: 455 LNMRLRSLRKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRGVYGLDTS 514

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--DLSALHFKEGD 549
           LG RRTT  E +   +  L  AMIEKEP+TV++S RGWIR+ + H          FKEGD
Sbjct: 515 LGARRTTIAEAAPTREIPL-DAMIEKEPVTVILSKRGWIRAQRGHVAPDQWGEFKFKEGD 573

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L  A HA TTD++L+ ++DG+ +T+ A  L  GRG GE ++L++D++ +  IV      
Sbjct: 574 ELLFAAHAQTTDKLLIAASDGRFFTVGADKLPGGRGFGEPLRLMVDIDPDARIVAMVPAS 633

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGEN 667
           +  +LL+ S+ G+ FIV   ++ A TRKG+  + +     + +   +    D VAVVG+N
Sbjct: 634 AGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDSVAVVGDN 693

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RKL++F + ++P M RG+GV LQ Y+DGG+SD + F + EGL+W         R+E DL 
Sbjct: 694 RKLVVFPLAEVPVMGRGQGVMLQRYRDGGLSDAVSFVLAEGLSWAMGGDSGRTRTETDLA 753

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W   RG  G + P GFPR+ +F
Sbjct: 754 PWRVARGAAGRMPPTGFPRNNRF 776


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/735 (51%), Positives = 520/735 (70%), Gaps = 12/735 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYLAYALSTI  RA+PD+RDG KPVHRR++HAM+ M L+     +K A++VGEV+G
Sbjct: 25  ALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHAMNNMRLNPEGGARKCAKVVGEVMG 84

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGDQS+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT  A L+L
Sbjct: 85  NFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGNIDGDSAAAMRYTECKMTAAAVLLL 144

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DEDAVDF+ +Y+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN  E+ +A L
Sbjct: 145 DGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNPAELIDACL 204

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L+  PE +  ++LE + GPDFPTGG+IVESRES++E+Y  GRGG R RA+W  E+ GRG
Sbjct: 205 LLLSKPEATTAEILERVPGPDFPTGGVIVESRESLLETYETGRGGVRTRAKWEKEDTGRG 264

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL PK+++++P++
Sbjct: 265 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 324

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRR+VL RR+  R+  I+
Sbjct: 325 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALIAFLAHRRDVLTRRARNRLSKIE 384

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+ IL GLLIAYLN+DE+I I+R ED+PK  +++ F+L++ Q DAILN RLR L KLEE
Sbjct: 385 ARLHILDGLLIAYLNLDEVIRIVRYEDEPKQKLMAAFALSDIQADAILNTRLRQLAKLEE 444

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST----DLGRR----- 495
            +I+ E   L+ E++ I ++L S K+QW+ +   +R+V+ +  K        GR      
Sbjct: 445 MEIRREHAQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLDKTGRATGVIG 504

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+ F +    D     +A+I +EPITV++S+RGWIR+ K    D S L FKEGD L   +
Sbjct: 505 RSVFEDAPVVDAEAALEALIVREPITVILSDRGWIRAAKGKVEDPSELKFKEGDKLGFLV 564

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TTD++LL ++DG+ +T+   NL S RGHGE ++++I+L+    I+  F + +  K  
Sbjct: 565 PAETTDKLLLFTSDGRFFTIGCANLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRF 624

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S +G  F++ E E +AN + GK  L V +       ++  GD +AVVG+N K+LIF +
Sbjct: 625 LASKQGYGFLMPEEEALANRKAGKQVLTVDA-AGAAFCLEAVGDQLAVVGDNGKILIFPL 683

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +++PEM RGKGV+LQSY++GG+ D I F    G  WID+AGR   R   +   W+GKR G
Sbjct: 684 EELPEMPRGKGVKLQSYREGGLRDAISFNADVGAFWIDTAGR--RRDWVEWRDWIGKRAG 741

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFP S +F
Sbjct: 742 AGKLSPKGFPTSKRF 756


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/739 (50%), Positives = 530/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVMFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/720 (51%), Positives = 505/720 (70%), Gaps = 11/720 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+  AA +K A++VGEV+G
Sbjct: 21  ALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD+LVRLAQ F QRYPL+ GQGNFGNIDGD+AAA RYTE ++T  + L++
Sbjct: 81  GYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNAAAMRYTECKLTAASVLLM 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+D+D+VDFR TY+++D EP V P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A L
Sbjct: 141 EGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACL 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           AL+D PE +  +L E + GPDFPTGG+ VE   SI+++Y  GRGG R+RARW  E + RG
Sbjct: 201 ALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWEREPLERG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            + IV+TE+PYQVQKS+LIE +AELI  K+ PLL D+RDESAED+R+V+ PK+R++D D 
Sbjct: 261 GYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDVRDESAEDIRVVIDPKSRNIDADS 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HRREVL RRS++R++ ++
Sbjct: 321 LMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACLQAFLDHRREVLNRRSAWRIERVE 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ +L+GL I +LN+DE+I I+R E++PK V+++RF L+E Q D IL+ RLR L ++EE
Sbjct: 381 KRLHLLEGLRIVFLNLDEVIRIVREEEQPKAVLIARFGLSETQADFILDTRLRQLARIEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             I++E   L  E   + SL +S  +QW +I  E+   ++       +  RRTT  E   
Sbjct: 441 MTIENEYKALSEELASLQSLTSSPAKQWKKIGQELAATRKAL-----ISPRRTTIAEAVD 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           A      +A I +E ITV++S RGWIR++K    D S L FKEGD+L   + A TTD++L
Sbjct: 496 ASAFVPAEAFIPREAITVILSERGWIRAVKGKVEDPSELKFKEGDALGFLVPAFTTDKLL 555

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + ++DG+ +T+ A  L SGRGHGE ++L+++L  +  IV    +    KLL+ S  G  F
Sbjct: 556 VAASDGRVFTVGADKLASGRGHGEPLRLMVELEESAGIVAVLAHQPGAKLLIASKAGYGF 615

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           I  E E++A  R GK  L       +   ++VTGDHV  +GEN K LIF  D++PEM RG
Sbjct: 616 IAPEDELLAQKRGGKQVLN----GDLLAAIRVTGDHVVTIGENLKTLIFKADELPEMGRG 671

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGV+LQS+K GG++D+  F    G  W+D  GR   R+  D   WLGKR G G + P+G 
Sbjct: 672 KGVKLQSFKQGGLTDIALFDGAHGPEWVDGGGR--RRNWPDWKDWLGKRAGAGRMGPRGL 729


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+  F LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMEWFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I  
Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNILP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P +R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/739 (50%), Positives = 530/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A + LI++P   I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  RVR
Sbjct: 183 HNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN
Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLR LRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRLLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVTLTNQVVDITAFIIKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY     
Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL+F
Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +ID+IPEM +G+GV LQ +K+  + D+  F   +GL W ++ G+   + E +++ +LGKR
Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G L P GFP++ +F S
Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/763 (50%), Positives = 518/763 (67%), Gaps = 38/763 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G+
Sbjct: 23  LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGD 82

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE
Sbjct: 83  TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+G++E+AVDFRD Y+   +EP V P+ FPN+LANG SGIAVGMAT+IP HN+ E+ +
Sbjct: 143 AMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGASGIAVGMATNIPPHNIAELID 202

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  GRG FR+R +  VE++
Sbjct: 203 ACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCQHEVEDL 262

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESA+D+RI+L PK++++D
Sbjct: 263 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESADDIRIILEPKSKNVD 322

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM 
Sbjct: 323 PEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMD 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------------- 420
            ID R+E+L+G +IA+LN+D +I IIR +D PK  ++                       
Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMREDWDRDHPRAYSEAEYVSPGEG 442

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  +  LL S + QW++I  ++
Sbjct: 443 VGELTEVQAEAILNMRLRSLRRLEEIELTRERDALREERAGLVELLGSEELQWSRITEQL 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ K+ F K    G RRT F E    +   L +AMI++EPITVV S  GWIR++  H +D
Sbjct: 503 KDTKKQFGKDYAGGARRTRFAEAGEVEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560

Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           L+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A NL  GRG GE ++L++DL +
Sbjct: 561 LNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   +LLV S  GN FI  E +I+A TR GK  L V  ++K K+ + V G
Sbjct: 621 EVEIVDILIHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDKAKICIPVEG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+FS++++PE+SRGKGVRLQ Y            DGG+SD+  F   E
Sbjct: 681 DHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQGALELDGGLSDITTFNWDE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W    G++  R E DL  WLGKR  VG   P GFPR+ KF
Sbjct: 741 GLKWEMGGGKT--RHEGDLTEWLGKRASVGKRPPHGFPRNYKF 781


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/745 (50%), Positives = 516/745 (69%), Gaps = 20/745 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71
           AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + ++ G A             
Sbjct: 19  ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLKMEPGGASPDVLVANPARNT 78

Query: 72  --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R PL+ GQGNFGNIDGD+AAA 
Sbjct: 79  TSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 138

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP  FPNLLANG SGIAVGMAT
Sbjct: 139 RYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGASGIAVGMAT 198

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP HNV E+ +AA  LIDNP+    +L+  + GPDFPTGG++V+S   I E+Y  GRG 
Sbjct: 199 SIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGGVLVDSPSIISEAYATGRGS 258

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI  +++P+L D+RDES E +
Sbjct: 259 FRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESDELI 318

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P+ R++DPD+LM+S+F L+D+E RFPLN+NVL   R P+V+ L  +L EWL H+ 
Sbjct: 319 RIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKHQI 378

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR ED+PK VM++ F L + Q +
Sbjct: 379 DVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMAEFGLNDRQAE 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +Q  ++  ++ ++++ +S  
Sbjct: 439 AILNMRLRSLRKLEEMELRREHSELLKERDDLIKLVESPARQRTRLKKDLADLRKRYSPD 498

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKE 547
           +D GRRRT   E + A +  L +AMIEKEPITV++S RGWIR++  H    SA  L FKE
Sbjct: 499 SDFGRRRTLVEEAAPAREIPL-EAMIEKEPITVILSERGWIRAMSGHRDLASADTLKFKE 557

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD   IA HA TTD++LL +  G+ +TL A  L  GRG G+ ++ L+D++    IV    
Sbjct: 558 GDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMDGTGQIVALMP 617

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665
             +  +LL+ SS G  F+   +++IA TRKGK  + V +  K+ +V  +    D VAVVG
Sbjct: 618 ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAPDADSVAVVG 677

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W    G    R+E D
Sbjct: 678 ENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGGGTGRVRTEAD 737

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  W   RG  G + P GFPR  +F
Sbjct: 738 MTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/734 (51%), Positives = 514/734 (70%), Gaps = 11/734 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K A++VGEV+G
Sbjct: 26  ALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGEVMG 85

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT+ A L+L
Sbjct: 86  NFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAMLLL 145

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN  E+ +A  
Sbjct: 146 DGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELIDACQ 205

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+W  E+ GRG
Sbjct: 206 LLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKEDTGRG 265

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL PK+++++P++
Sbjct: 266 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 325

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR+  R+  I+
Sbjct: 326 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHRLAKIE 385

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN RLR L KLEE
Sbjct: 386 ARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLRQLAKLEE 445

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV-------KEIFSKSTDLG-RRR 496
            +I+ E   L+ E++ I ++L S  +QW  +   + EV       K    K    G   R
Sbjct: 446 MEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPAPTGVTGR 505

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           + F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKEGD L   + 
Sbjct: 506 SVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKLGFLVP 565

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F + +  K ++
Sbjct: 566 AETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL 625

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S  G  F++ E E +AN + GK  L V + E     ++  GD +AV+G+N K+LIF ++
Sbjct: 626 ASKGGYGFLMPEEEALANRKAGKQVLNVGN-EGAAFCLEAVGDQLAVIGDNGKILIFPLE 684

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           ++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR  + +E     W+G+R G 
Sbjct: 685 ELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGRRRDWAE--WKEWVGRRAGA 742

Query: 737 GSLVPKGFPRSGKF 750
           G LVPKGF  + +F
Sbjct: 743 GKLVPKGFATNKRF 756


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/734 (51%), Positives = 514/734 (70%), Gaps = 11/734 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K A++VGEV+G
Sbjct: 26  ALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGEVMG 85

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT+ A L+L
Sbjct: 86  NFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAMLLL 145

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN  E+ +A  
Sbjct: 146 DGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELIDACQ 205

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+W  E+ GRG
Sbjct: 206 LLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKEDTGRG 265

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL PK+++++P++
Sbjct: 266 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 325

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR+  R+  I+
Sbjct: 326 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHRLAKIE 385

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN RLR L KLEE
Sbjct: 386 ARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLRQLAKLEE 445

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV-------KEIFSKSTDLG-RRR 496
            +I+ E   L+ E++ I ++L S  +QW  +   + EV       K    K    G   R
Sbjct: 446 MEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGR 505

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           + F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKEGD L   + 
Sbjct: 506 SVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKLGFLVP 565

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F + +  K ++
Sbjct: 566 AETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL 625

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S  G  F++ E E +AN + GK  L V + E     ++  GD +AV+G+N K+LIF ++
Sbjct: 626 ASKGGYGFLMPEEEALANRKAGKQVLNVGN-EGAAFCLEAVGDQLAVIGDNGKILIFPLE 684

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           ++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR  + +E     W+G+R G 
Sbjct: 685 ELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGRRRDWAE--WKEWVGRRAGA 742

Query: 737 GSLVPKGFPRSGKF 750
           G LVPKGF  + +F
Sbjct: 743 GKLVPKGFATNKRF 756


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/729 (51%), Positives = 527/729 (72%), Gaps = 4/729 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +KK AR+VG+VIG
Sbjct: 14  ALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKCARVVGDVIG 73

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE+RMT++  L++
Sbjct: 74  KYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYTESRMTEICMLLM 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP HN+ E+C+A +
Sbjct: 134 DDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHNLHELCDALI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LID+P+  +  ++ +I GPDFPTGGII++  E I  +Y  GRG  RVR+RW  EE+  G
Sbjct: 194 HLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRVRSRWKKEELSYG 253

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+ P++R+ DP +
Sbjct: 254 TYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVIEPRDRNCDPQV 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ RRS++ +  I 
Sbjct: 314 VMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSIVTRRSTYLLNKIQ 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+EIL+GL IAYLN DEII IIR ED+PK +M++ F LTE QV+AILN RLRSL +LEE
Sbjct: 374 HRLEILEGLRIAYLNFDEIIKIIREEDEPKAIMINWFKLTEIQVEAILNTRLRSLHRLEE 433

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G RRT F EV+ 
Sbjct: 434 QKIINEHSNLKKQQVILEEILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTL 493

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            ++     A I KEPIT++ S  GW+RS K H+ DLS + +KEGD+ K  L A+TTD++L
Sbjct: 494 TNQVVDITAFITKEPITIICSKMGWVRSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLL 553

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++S++G+ +TL A N+  G+G  E+I+LL+D+ +N DI    VY     LL+ SS G  F
Sbjct: 554 IVSSEGRFFTLLADNISKGKGTEESIKLLVDIGNN-DITNILVYKPDQLLLLASSIGKGF 612

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +V  +E+IA T+ GK  + V +       +   GD VA +GE+RKLL+F+ID+IPEM +G
Sbjct: 613 LVNSNEVIAQTKTGKQIMNVPNGHICITCLPANGDSVACIGESRKLLVFNIDEIPEMKKG 672

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GV LQ +KD  + DV  F   +GL W ++ G+   + E +++ +LGKRGG G L P GF
Sbjct: 673 QGVTLQKFKDAKLLDVKIFNKEDGLGW-NNNGKV--KLEKNIITFLGKRGGAGKLPPMGF 729

Query: 745 PRSGKFLSS 753
           P++ +F SS
Sbjct: 730 PKNNRFSSS 738


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/747 (50%), Positives = 514/747 (68%), Gaps = 23/747 (3%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PDLRDG KPVHRR++ AM ++ LD   AFKKSAR+VG+VIG
Sbjct: 25  ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLDPTGAFKKSARVVGDVIG 84

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T  A  ++
Sbjct: 85  KYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTATAARLM 144

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DE  VDF  TYN E+ EP +FP  FPNLLANG++GIAVGMATSIPSHNV EI +A L
Sbjct: 145 AGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGSTGIAVGMATSIPSHNVAEIVDATL 204

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257
            LIDNP +   +L+    GPDFPTGG++V+S  +I  +Y +G+G  RVR R+        
Sbjct: 205 MLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAISSAYEVGKGAIRVRGRFSTGRDEAG 264

Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E++G G W +V++EIPY V K +LIE+IA LI  K++P+LED+RDES E +RI
Sbjct: 265 EWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIAALIADKKLPILEDVRDESDEHIRI 324

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PK+R++DPDLL ES++ L+++E+RF LN+N+L   R P V+ L  IL+EW+  + ++
Sbjct: 325 VLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLDARRTPGVLGLKQILQEWVIAQIDI 384

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  I  R+E+L G +IAYLN+D II IIR ED+PKPVM++ F LT+ Q +AI
Sbjct: 385 LVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEIIRTEDEPKPVMMAEFGLTDRQAEAI 444

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE +++ E D LLAE++++  LL +  +Q  ++  ++  +++ +   T 
Sbjct: 445 LNMRLRSLRKLEEMELRRERDALLAEQDELTKLLENPARQRTRLKRDLAALRKEYGPDTA 504

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA------LHF 545
           LGRRRTT  E +   + ++  AMIEKEP+TV++S RGWIR+ K H V L          F
Sbjct: 505 LGRRRTTIAEAAPTREFSM-DAMIEKEPVTVILSQRGWIRAAKGH-VPLGTDGKGEDFKF 562

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD    A HA TTD++L+   +G+ YTL A  L   RG GE I+ ++D++ N  +V  
Sbjct: 563 KEGDGPAFAFHAQTTDKLLIAIDNGRFYTLGADKLPGARGFGEPIRTVLDIDPNGQVVAI 622

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAV 663
           F +    +LL+ ++ G  F+ E  E++A TRKG+  +       + +V ++    DHVAV
Sbjct: 623 FPWRHGGQLLLAANNGRGFVAEMDELLAETRKGRGVVSTKPGVHLAVVREIAPEHDHVAV 682

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRKL+IF++ ++P + +G+GV LQ YKDGG+SD +  K+ +GL+W         R+E
Sbjct: 683 VGENRKLVIFALSEMPVLGKGQGVTLQRYKDGGLSDAVTLKLEDGLSWAMGGETGRTRTE 742

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DLL W   RG  G L P GFPR  KF
Sbjct: 743 KDLLPWKVARGAAGRLPPTGFPRDNKF 769


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/727 (51%), Positives = 518/727 (71%), Gaps = 7/727 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ LD  + FKK 
Sbjct: 15  HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+ AA RYTEAR
Sbjct: 75  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN
Sbjct: 135 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y  GRG FR+RAR
Sbjct: 195 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDES +++R+VL P
Sbjct: 255 WEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLVLEP 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ WL HR EVL RR
Sbjct: 315 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHEVLERR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ A++RR+EIL G L  YLN+D++I IIR ED  K  +++ F LT+ Q +++LN+R
Sbjct: 375 SRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L AEK  + +LL+S KQ+W  I  E+  + + F K   LG R
Sbjct: 435 LRSLRRLEEMEIRKEHDALSAEKAALMALLDSEKQRWKTIERELTGMIKAFGKGR-LGER 493

Query: 496 RTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R+T     +  D + +++  +E+EP+T+++S +GW+R++K H+VDL    FKEGD+LK+A
Sbjct: 494 RSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDALKLA 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   TTDR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++  F  +   + 
Sbjct: 552 IPCQTTDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVVG+NR+ LIF 
Sbjct: 612 LVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARVCVPAEGDHVAVVGDNRRFLIFP 671

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           ++Q+P M+RG GV LQ Y DGG+   + F   +GL W    G +  R   DL  W+ +R 
Sbjct: 672 LEQLPVMARGLGVALQKYSDGGLRQAVVFTAADGLHW---PGTARIRQFADLQDWVSRRA 728

Query: 735 GVGSLVP 741
            VG + P
Sbjct: 729 AVGKVAP 735


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/748 (50%), Positives = 518/748 (69%), Gaps = 24/748 (3%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           ALEERYL YALSTI  R++PDLRDG KPVHRR++  M ++ LD    FKKSAR+VGEVIG
Sbjct: 24  ALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPTNTFKKSARVVGEVIG 83

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD + YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A  ++
Sbjct: 84  KYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTRTAMALM 143

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DE  VDF  TYN E+ EP + P  FPNLLANG SGIAVGMAT+IPSHNV EI +A L
Sbjct: 144 AGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGASGIAVGMATNIPSHNVHEIIDATL 203

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256
            LIDNP +   +L+E   GPD PTGG+IV+S E I  +Y  GRG FR+R R+        
Sbjct: 204 ELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISNAYETGRGSFRIRGRFHAAEAEKQ 263

Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E +G G W +V++EIPYQVQK +LIE+IA+ I  K++P+L+D+RDES E +RI
Sbjct: 264 ADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQAIADKKLPILDDVRDESDEQIRI 323

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R++DP+LL ESI+ L+DMETRF LN+NVL   R P VM L  +L+ W+  + E+
Sbjct: 324 VLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDATRTPMVMGLKELLENWVRSQIEI 383

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RR+  R+  I RR+E+++G +IA+LN+D +I IIR ED+PK VM++ FSLT+ Q +AI
Sbjct: 384 LQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIRYEDEPKQVMMAEFSLTDRQAEAI 443

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE ++K E  +LLAE+E+++ LL S  +Q  ++  +++ +++ +   T+
Sbjct: 444 LNMRLRSLRKLEEMELKQEKTDLLAEQEELEKLLGSPARQRTRLKRDLKALQKEYGLDTE 503

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LH 544
           LG RRTT  E     + ++  AMIEKEP+TVV+S +GW+R+ K H VDL           
Sbjct: 504 LGARRTTIAEAEPTVEFSM-DAMIEKEPVTVVLSQKGWVRAAKGH-VDLEGSKDGCGDFK 561

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +KEGD    A+H  TTD++LL + +G+ +TL A  L   RG GE ++  +D++    IV 
Sbjct: 562 YKEGDGPAFAVHCQTTDKVLLAADNGRFFTLGADKLPGARGFGEPVRNTLDIDAEAQIVA 621

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVA 662
             V +   +LL+ +  G  F  E  E++A TRKGK  + +  + K+++V  +    DHVA
Sbjct: 622 MLVSNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVVNLKGDAKLRVVRPIADCDDHVA 681

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           VVGENRKL++F+++++P ++RG+GV+LQ Y+DGG+SD   F + +GL+W         R+
Sbjct: 682 VVGENRKLVVFNLEELPVLARGQGVQLQRYRDGGLSDAKTFVLDQGLSWQMGGKGDRTRT 741

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           E D+  W   RGG G L P+GFPR  +F
Sbjct: 742 ETDIWQWKVARGGAGRLPPQGFPRDNRF 769


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/720 (51%), Positives = 509/720 (70%), Gaps = 8/720 (1%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K A++VGEV+G
Sbjct: 17  ALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKCAKVVGEVMG 76

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGDQ++YD+LVR+AQ F QRY L+ GQGNFGNIDGD+AAA RYTE R+T  A +IL
Sbjct: 77  NFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECRLTLAAMMIL 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G++EDAVDFR TY+++D+EPVV P  FPNLLANG  GIAVGMATS+P HNV E+ +A  
Sbjct: 137 DGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHNVVELVDACR 196

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L+ N   +  +L+E+I GPDFPTGG+ VESR+SI E+Y  GRG  RVRAR+ VE+ GRG
Sbjct: 197 KLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRARYEVEDAGRG 256

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W I+V EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E++R+VL PK+R+++P++
Sbjct: 257 QWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDENIRLVLEPKSRNIEPEV 316

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F +SD+ETRFP+NMNVL     P+VM L   L  WL HRR VL R S++R++ I+
Sbjct: 317 LMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRMSNWRLEKIE 376

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ +L GL+IA+LN+DE+I I+R EDKP+ +++SRF+L+E Q D IL+ RLR L +LEE
Sbjct: 377 KRLHLLDGLMIAFLNLDEVIRIVREEDKPRDMLMSRFTLSELQADYILDTRLRQLARLEE 436

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             I+ E   L  E+E I +LL S K QW +I   + EV++          RRTT+ +   
Sbjct: 437 MVIQDEHKKLSEEREGILALLGSEKMQWKRIDQLLVEVRKKLPSP-----RRTTYADAPV 491

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             +    ++ + KE ITV++S RGWIR+ K    D S L FKEGD L   +  + TD+ L
Sbjct: 492 GIEVAAIESYLPKEAITVILSKRGWIRAAKGKVEDPSELKFKEGDELSFLVPGYNTDKFL 551

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +L+TDG+  TL    L S RGHGE ++L++D+  +  IVT F Y +  K ++V+  G  F
Sbjct: 552 ILTTDGRFLTLSGDKLPSARGHGEPLRLMLDIEESAKIVTVFAYTAGAKRVMVAKNGYGF 611

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           ++ E + +AN R GK  + V   E M   ++VTGD + V+GEN K+L++ + ++PEM+RG
Sbjct: 612 VMNEEDAVANKRAGKQTMTVDGTEAMA-ALQVTGDLICVLGENNKVLVYPVTELPEMARG 670

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGV+LQ+YKDGG+ D+  +       W D AG++  R   D+  ++G+R   G + P+G 
Sbjct: 671 KGVKLQAYKDGGVKDITVYDSNGSPQWFDGAGKA--RDFKDIKDYIGRRATAGKMAPRGL 728


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/731 (52%), Positives = 505/731 (69%), Gaps = 7/731 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PD+RDG KPVHRR++ AM  + LD  A +KK AR+VG+VIG
Sbjct: 21  ALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLKLDPAAGYKKCARVVGDVIG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+TQVA  ++
Sbjct: 81  KYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAYRYTEARLTQVAIDLM 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+DEDAV +R TYN E+ EP +FP  FPNLLANG SGIAVGMATSIP HN  E+ +AA+
Sbjct: 141 DGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGASGIAVGMATSIPPHNAAELLDAAI 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            ++D+P+   + +L  + GPDFPTGGI+V++   + ESY  GRGGFRVRARW +E    G
Sbjct: 201 HVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILRESYTTGRGGFRVRARWEIEREKGG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W IVV+EIPY V K +LIE+IA LI  K++P+L D+RDES   VRIVL P++R++DP +
Sbjct: 261 GWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILADVRDESDAQVRIVLEPRSRTVDPQV 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LM+ +F  SD+ETR  LN+NVL   R P+VM L   L  W+ H+  VL RRS  R+  I 
Sbjct: 321 LMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREALAAWVEHQFVVLRRRSEHRLGKIA 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            R+E+L G L+AYLN+D +I IIR ED+PK VM+  F LT+ Q +AILN+RLRSLR+LEE
Sbjct: 381 DRIELLDGYLVAYLNLDRVIEIIRTEDEPKAVMIEEFRLTDRQAEAILNMRLRSLRRLEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
           ++I+ E D L  E+E++  LL S ++Q  ++  ++ ++++ +   T LG RRT   E + 
Sbjct: 441 FEIRGERDKLDKEREQLTQLLGSEQRQRTRMKKDLGKIRDRYGLETILGARRTLIEEAAP 500

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHTTD 561
                L +AMIE+EPITV++S RGWIR++K H VDL++     FKEGD    A HA TTD
Sbjct: 501 TRDIPL-EAMIEREPITVILSQRGWIRAMKGH-VDLASAETAKFKEGDGPAFAFHAQTTD 558

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++LL + +G+ +TL A  L  GRG GE ++ +IDL+ +  IV         KLLV +S G
Sbjct: 559 KLLLAAANGRFFTLAADKLPGGRGFGEPVRAMIDLDGSIGIVGFLPAARAAKLLVAASDG 618

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIP 679
             FIV  ++ IA TRKGKT L   +   +K+V  V    D+VA +G+NRKLL+F + +  
Sbjct: 619 RGFIVPAADTIAETRKGKTVLTPRAGASLKVVRPVGAEDDYVAAIGDNRKLLVFPLTEFV 678

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           E+SRG GV+LQ Y+DGG+SD   F   +GL+W         R+E DL  W   RG  G +
Sbjct: 679 ELSRGTGVQLQRYRDGGLSDATTFVFKDGLSWPMGGETGRVRTEADLSAWRTARGAAGRM 738

Query: 740 VPKGFPRSGKF 750
            P GFPR  +F
Sbjct: 739 PPTGFPRDNRF 749


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/741 (49%), Positives = 510/741 (68%), Gaps = 16/741 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PDLRDG KPVHRR++  M ++ LD  + FKKSAR+VGEVIG
Sbjct: 25  ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPASGFKKSARVVGEVIG 84

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD + YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A  ++
Sbjct: 85  KYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTKTAMRLM 144

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+D   VDF  TYN E+ EP + P  FPNLLANG SGIAVGMAT+IPSHNV EI +A L
Sbjct: 145 EGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGASGIAVGMATNIPSHNVAEIVDATL 204

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256
            +IDNP +   +L+E   GPDF TGG++ ES E+I  +Y  GRG FRVR R+        
Sbjct: 205 EVIDNPHVEHARLMEIFKGPDFATGGVVPESTETISHAYETGRGSFRVRGRFHAAEAEKE 264

Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                 +E +G G W +V++EIPYQV K +LIE+IA  I  +++P+LED+RDES E +RI
Sbjct: 265 EDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAAAIADRKLPILEDVRDESDEQIRI 324

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R++DP+LL ESI+ L+DMETRF LN+NVL   R P VM L  +L+ W+A + ++
Sbjct: 325 VLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLDRTRTPMVMGLKELLENWIASQIDI 384

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS  R+  I RR+E++ G +IA+LN+D +I IIR ED+PKPVM+  F LT+ Q +AI
Sbjct: 385 LQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEIIRTEDEPKPVMMDEFKLTDRQAEAI 444

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE Q++ E D LL E+++++ LL S  +Q  ++  ++  +++ +S+ T 
Sbjct: 445 LNMRLRSLRKLEEMQLRGEKDELLKEQDELEKLLGSPARQRTRLKRDLGALRKEYSEDTA 504

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG RRTT  E + A + ++  AMIEKEP+TV++S +GWIR  K H        +KEGD+ 
Sbjct: 505 LGARRTTIEEAAPAVEFSM-DAMIEKEPVTVILSQKGWIRGAKGHLPLDQEFKYKEGDAP 563

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              LHA TTD++LL+  DG+ +TL A  L   RG GE ++  +D++     V+  V+   
Sbjct: 564 AFVLHAQTTDKLLLIGNDGRVFTLGADKLPGARGFGEPVRNTLDIDGQAQFVSVVVHSEG 623

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGENRK 669
            ++L+ +S G  F V    ++A TRKG+  + V    K+ +   +    DHVAVVG+NRK
Sbjct: 624 QEVLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGNVKLVVARPIAKAHDHVAVVGDNRK 683

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L++F+++++P +++G+G +LQ+Y+DGG+SD   F + +GL+W         R+E ++  W
Sbjct: 684 LVVFNLEELPRLAKGQGNKLQNYRDGGLSDATTFTMEDGLSWTMGGKEGRTRTEPEMWQW 743

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
              RGG G L P+GFPR  KF
Sbjct: 744 KVARGGAGRLPPQGFPRDNKF 764


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/736 (50%), Positives = 520/736 (70%), Gaps = 11/736 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ LD  + FKK 
Sbjct: 7   HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+ AA RYTEAR
Sbjct: 67  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN
Sbjct: 127 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y  GRG FR+RAR
Sbjct: 187 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+    +W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDES +++R++L P
Sbjct: 247 WEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLILEP 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ WL HR EVL RR
Sbjct: 307 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHEVLERR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ A++RR+EIL G L  YLN+DE+I IIR ED  K  +++ F LT+ Q +++LN+R
Sbjct: 367 SRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L AE+  + +LL+S KQ+W  I  E+  + + F K   LG R
Sbjct: 427 LRSLRRLEEMEIRKEHDALSAEQAALMALLDSEKQRWKTIERELTTMIKAFGKGR-LGER 485

Query: 496 RTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           R+T     +  D + +++  +E+EP+T+++S +GW+R++K H+VDL    FKEGD+ K+A
Sbjct: 486 RSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDAFKLA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   T+DR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++  F  +   + 
Sbjct: 544 IPCQTSDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR 603

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVVG+NR+ LIF 
Sbjct: 604 LVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARICVPAEGDHVAVVGDNRRFLIFP 663

Query: 675 IDQIPEMSRGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           ++Q+P M+RG GV LQ Y D GG+   + F   +GL W    G +  R   DL  W+ +R
Sbjct: 664 LEQLPVMARGLGVALQKYSDGGGLRQAVVFTAADGLHW---PGTARVRQFADLQDWVSRR 720

Query: 734 GGVGSLVPKGFPRSGK 749
             VG + P   P +GK
Sbjct: 721 AAVGKVAP---PWAGK 733


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/720 (50%), Positives = 503/720 (69%), Gaps = 7/720 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+  AA +K A++VGEV+G
Sbjct: 21  ALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMG 80

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
             HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA RYTE ++T  A L+L
Sbjct: 81  GYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLL 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G+D+DAVDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A  
Sbjct: 141 DGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQ 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L++ P+ + E L++ + GPDFPTGG+ VE   S++++Y  GRGG R+RA W  E++GRG
Sbjct: 201 LLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYETGRGGVRLRAAWDTEDLGRG 260

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            W IVVTEIPYQVQKS+LIE++A+LI  K+ PLL D+RDESAED+R++L PK+R+++P++
Sbjct: 261 VWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDESAEDIRLILEPKSRTVEPEV 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           LMES+F LSD+ETRFP+NMNVL     P+VM L   L+ +L HRR VL RRS +R+  ++
Sbjct: 321 LMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAFLDHRRVVLNRRSQWRIARVE 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ +L+GL I +LN+DE+I I+R E++PK  +++ F L+E Q D IL+ RLR L +LEE
Sbjct: 381 KRLHLLEGLRIVFLNLDEVIRIVREEEQPKAALIATFGLSELQADFILDTRLRQLARLEE 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             I+ E   L  E   + +L +S  +QW  I  E+  V++       +  RRT   +   
Sbjct: 441 MTIEKEFKELSEELAALQALTSSETKQWKAIGKELEAVRKAL-----VSPRRTVIGDAVD 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           A      +A I +E ITV++S+RGWIR+ K    D S L FKEGD L   + A+TTD++L
Sbjct: 496 ASAFVAPEAFIPREAITVILSDRGWIRAAKGKVDDPSELKFKEGDKLGFLVPAYTTDKLL 555

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    ++   KLL+ S  G  F
Sbjct: 556 VGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVVAHEPDAKLLIASKAGYGF 615

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +  E++++A  R GK  L       +++  +   DHVAV+GEN K LIF + ++PEM RG
Sbjct: 616 VAPENDLLAQKRGGKQVLNGEMLAMLRIPSQPQADHVAVIGENIKTLIFPLAELPEMGRG 675

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           KGV+LQ+YK GG++DV  F    G  W D  GR   R+  D   WLGKR G G   P+G 
Sbjct: 676 KGVKLQNYKQGGLADVTVFNAEAGPEWADGGGR--RRNWPDWKDWLGKRAGAGRQGPRGL 733


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/739 (49%), Positives = 526/739 (71%), Gaps = 4/739 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A L LIDNP+  +  ++ +I GPDFPTGGII++  + I  +Y  GRG FRVR
Sbjct: 183 HNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+  IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRLVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++E QV+ ILN
Sbjct: 363 RRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTIIMERFKISEIQVEVILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLR+L+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRALQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWKIVKKEIKSVQTQFGLNTIIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV   ++     A I KEPIT++ S  GWIR LK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVDLTNQVIDITAFITKEPITIICSKMGWIRLLKGHNTDLSTIKYKEGDAEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            + A+TTD+IL++S+ G+ +TL A N+  G+G   +I+LL+D+ +N DI    VY     
Sbjct: 543 IIEAYTTDKILIISSKGRFFTLLADNISKGKGTAVSIKLLVDIGNN-DITNILVYKPYQL 601

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ SS G  F+V  +E+IA T+ GK  + +         + V G+ +A + E+R+LLIF
Sbjct: 602 LLLASSIGKGFLVNSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNSIACINESRRLLIF 661

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +I++IPEM +G+GV LQ +K+  + D+  F   +GL+W D  G+   + E +++ +LGKR
Sbjct: 662 NINEIPEMKKGQGVVLQRFKNAKLLDIKIFNKEDGLSWND--GKKI-QLEKNIVAFLGKR 718

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           G  G+L P GFP++ +F S
Sbjct: 719 GSAGTLPPIGFPKNNRFSS 737


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/728 (49%), Positives = 516/728 (70%), Gaps = 10/728 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN K V    AL ERYLAYA+STI  R++PD+RDG KPVHRR+I AM ++ LD  + FKK
Sbjct: 11  ENTKLVD---ALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+AAA RYTEA
Sbjct: 68  CARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA+ +L+G+++D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP H
Sbjct: 128 RLTEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV EIC AA+ LI +P++++ KLLE + GPDFPTG +IVE R++I  +Y  GRG FR+RA
Sbjct: 188 NVGEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES+ D+R+VL 
Sbjct: 248 RWEVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSADIRLVLE 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R ++P++LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +VL R
Sbjct: 308 PKSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R+  R+ A+DRR+EIL G L  YLN+DE+I IIR ED  +  +++ F L+E Q +++LN+
Sbjct: 368 RTRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDDARASLMAAFDLSELQAESVLNM 427

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLR+LEE +I+ E   L  E+  + +L+     +W  I  EI+ +++ F   T LG 
Sbjct: 428 RLRSLRRLEETEIRKEHAALTEERAGLLALMEKESLRWKHITSEIKGIQKKFGGGT-LGA 486

Query: 495 RRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RR+T    +   +  +  A+ +E+EP++V++S +GWIR+++ H VD  A  FKEGD L++
Sbjct: 487 RRSTLA--APPAEVDISAALPVEREPLSVILSQKGWIRTVRGHGVDPEAQKFKEGDGLRL 544

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   ++DR+   +TDG+A+TL A +L  GRG G+ ++L+I+L++ +DI+T F      +
Sbjct: 545 IVECQSSDRLCCFATDGRAFTLRAADLPRGRGDGQPLRLMIELSNEEDIITIFPVTQDAR 604

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
            L+ SS G   IV E +++A  R GK  L +   E  ++     GDHV V+G N+++L+F
Sbjct: 605 RLLASSAGRGMIVREEDMVAEKRTGKQVLNLKEGESAQVCALAQGDHVLVIGSNKRMLVF 664

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           ++ Q+PEM+RG GV LQ YK+G + D + F    G+ W D       R+ +D+   +GKR
Sbjct: 665 ALTQLPEMTRGLGVALQKYKEGHLRDAVVFAGDAGVAWPDP---QRVRTLSDMKEQMGKR 721

Query: 734 GGVGSLVP 741
           G +G   P
Sbjct: 722 GDMGRPAP 729


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/738 (49%), Positives = 524/738 (71%), Gaps = 5/738 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +K
Sbjct: 3   EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE
Sbjct: 63  KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP 
Sbjct: 123 SRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+C+A L LIDNP+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FRVR
Sbjct: 183 HNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFRVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +RW  EE+  G++ IVVTEIPYQ+QKS+LIE+IA L+  K+IPL+  IRDES + +R+V+
Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRVVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ 
Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNIII 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++  QV+ ILN
Sbjct: 363 RRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTIIMERFKISAIQVEVILN 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLRSL+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T +G
Sbjct: 423 TRLRSLQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWQIVKKEIKAVQTKFGLNTIIG 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ K 
Sbjct: 483 ARRTSFEEVDLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDTEKF 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-AIQLLIDLNHNQDIVTAFVYDSTC 612
            + A+TTD+IL++S+ G+ +TL A N+  G+G G  +I+LL+D+ +N DI    VY    
Sbjct: 543 IIEAYTTDKILIISSKGRFFTLLADNISKGKGTGGVSIKLLVDIGNN-DITNILVYKPNQ 601

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
            LL+ SS G  F+V  +E+IA T+ GK  + +         + V GD +A +GE+R+LL+
Sbjct: 602 LLLLASSIGKGFLVNSNEVIAQTKTGKQIMNIPEGYSCIACLPVNGDSIACIGESRRLLV 661

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W D         E +++ +LGK
Sbjct: 662 FNIDEIPEMKKGQGVVLQRFKNAKLLDIKIFNKQDGLSWNDGTKIQL---EKNIVAFLGK 718

Query: 733 RGGVGSLVPKGFPRSGKF 750
           RGG G+  P GFP++ +F
Sbjct: 719 RGGFGTFPPIGFPKNNRF 736


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/733 (48%), Positives = 505/733 (68%), Gaps = 7/733 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERY+AYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  + FKK 
Sbjct: 8   HIEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE+R
Sbjct: 68  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA+ +L G+ +DAVDFR TY+ ED EP+V P  FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 LTEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             EIC AA  LI+ P+++I +L++ + GPDFPTGGI+VE R+SI+ SY  GRG FR RAR
Sbjct: 188 AAEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSFRTRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W I+VTEIPYQVQKSRLIE+IA+L+  +++PLL D+RDES  D+R+VL P
Sbjct: 248 WEVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTDIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K + ++P++LME++F  + +E RF LNMNVL   RVP V+ L  +L+ WL H  EVL RR
Sbjct: 308 KTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHEVLVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R+ A+ RR+EIL+G L  YLN+DE+I IIR ED+PK  +++ FSLT+ Q +A+LN+R
Sbjct: 368 SNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPKVSLMATFSLTDVQAEAVLNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L  E++ +++LL S +++W +I  ++    + F  S  LG R
Sbjct: 428 LRSLRRLEEMEIRRERDKLADEQKALETLLGSERRRWTRIGKDLDGTIKKFG-SGPLGER 486

Query: 496 RTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RT     +  +   +  A+ I++EP+TV++S  GWIR++K H +D     FKEGD   ++
Sbjct: 487 RTLIA--AAPELIDISAALEIDREPLTVLLSREGWIRAMKGHGLDPQGHRFKEGDEGWLS 544

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +TDR+ L+S+ GKAYT+ A +L  GRG G+  + ++D+     +VT F      + 
Sbjct: 545 VECQSTDRLCLISSSGKAYTIKAADLPRGRGFGQPFRTVVDVPQEDRVVTLFPVSDEGRR 604

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S+ G   IV E+ ++A  R GK    +   +++   V V G HV  +G+N++ LIF 
Sbjct: 605 LIASAAGRGMIVSEAGLVAEKRTGKQVFNIKDGDEVFACVPVGGTHVLTLGQNKRALIFP 664

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           ++Q+PEM+RG GV  Q   D  + D+    + EGL W +       R+  DL    G+RG
Sbjct: 665 LEQVPEMTRGGGVAFQKLGDSTLRDIRTLTLSEGLLWQEG---QRVRATADLAPLEGRRG 721

Query: 735 GVGSLVPKGFPRS 747
            VG   P+   R+
Sbjct: 722 AVGRAAPQWMLRN 734


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/816 (47%), Positives = 523/816 (64%), Gaps = 75/816 (9%)

Query: 6   ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S++ T  E +   +S  LR AL ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MSDTTTPPELDPNDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G++E+AVD+R+ Y+   +EPVV P++FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+C+A + LI  P+   E LL Y+ GPDFPTGG+IVE  E+I  +Y
Sbjct: 181 AVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIANAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R RW VE++GRG+W IVVTEIPYQVQKS+LIEKIAELI AK+IP+L D+RD
Sbjct: 241 RTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL-- 361
           ESAEDVR+++ P+++++DP +LM  +F  SD+E RF LNMNVL  G+ P+V  L  +L  
Sbjct: 301 ESAEDVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVLRA 360

Query: 362 -----KEWLAHRREVLFRRSSFRMQAI----------DRRVEILK-------GLL----- 394
                +E L  R      +   R++ +          DR +EI++        L+     
Sbjct: 361 FLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAALMYEDWS 420

Query: 395 -------------------IAYLNIDEIIAIIRNEDKPKPVMVS--------------RF 421
                              +A +++ ++  I   E +   V+                  
Sbjct: 421 RVHQDTLARAMDEAAYISPLAGVDVSKLAVIADAEAQATGVLTESGDTRAVPHSYAGREN 480

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q +AILN+RLRSLR+LEE  +  E D L++E+  ++ LL++   QW  IA ++R 
Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAGLEDLLDNEDLQWTTIADQLRA 540

Query: 482 VKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            K+ F K         G+R +TF      +   ++ AMI++EPITVV S  GWIR++  H
Sbjct: 541 TKKQFGKDWVIDGIKRGQRLSTFETAGEVEDVPIE-AMIDREPITVVCSQMGWIRAMTGH 599

Query: 537 SVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            +DL+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A NL  GRG GE ++L++D
Sbjct: 600 -IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVD 658

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L +   IV+ F++    KLLV SS G+ F+V E E++A TR GK  L V  +    LV  
Sbjct: 659 LPNEVQIVSLFIHQPGRKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRGDGVAALVCH 718

Query: 656 -VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            V+GD VA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F    GL+W D 
Sbjct: 719 PVSGDSVATVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGLSDATTFTRDAGLSWQDP 778

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           AGR+  R+E DL  W GKR   G + P+GFPR  KF
Sbjct: 779 AGRT--RTEADLAEWTGKRASSGRMAPRGFPRDNKF 812


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/822 (46%), Positives = 522/822 (63%), Gaps = 81/822 (9%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D + + +  + E   A  LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI+ AM 
Sbjct: 41  TDTVDDPDNPISEF--AEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMR 98

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L+ G  F+KS++I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 99  ELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 158

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+DEDAVDFR+ Y+    EPVV P+ FP+LLANG +G
Sbjct: 159 GDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAG 218

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I E+
Sbjct: 219 IAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEA 278

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+R++W VE++GRG W I+VTEIPYQVQKS+LIEK+AE+I  K++PLL D+R
Sbjct: 279 YRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVR 338

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+DVRIVL PK R+++P++LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+
Sbjct: 339 DESADDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLR 398

Query: 363 -------EWLAHRREVLFRRSSFRMQAI----------DRRVEILK-------------- 391
                  E L  R +    +   R++ +          DR ++I++              
Sbjct: 399 AFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYEDW 458

Query: 392 ----------------------GLLIAYLNIDE---------IIAIIRNEDKPKPVMVSR 420
                                 G+ +A L + E         I     +   PK  +   
Sbjct: 459 SRPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVGRS 518

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L++ Q DAILN+RLRSLR+LEE ++  E D L+ E+  ++ LL+S   QW +I  E++
Sbjct: 519 EGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELK 578

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           + K+ F K    G RRT F E +      L+ AMIE+EP+T+V S  GWIR++  H VDL
Sbjct: 579 DAKKKFGKDYVAGARRTQFAEAAEVPDVPLE-AMIEREPVTIVCSQMGWIRAMSGH-VDL 636

Query: 541 S-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +    FK+GD  + A HA TTD+I++ + +G+ YTL A NL  GRG GE ++L++DL ++
Sbjct: 637 TRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPND 696

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I+  FV+    KL+V S  GN FIV E++++A T+ GK  L V S++  KLV  V GD
Sbjct: 697 VEIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNV-SDDVAKLVKPVAGD 755

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICEG 708
           HVAVV ENRKLL+F I ++PEM RGKGVRLQ Y            DGG+SD+  F +  G
Sbjct: 756 HVAVVSENRKLLVFPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLATG 815

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+W  +  R+  R+E D+  W+GKR GVG + P GFP+S  F
Sbjct: 816 LSWAATGDRT--RTEVDMSPWIGKRAGVGKMPPHGFPKSNTF 855


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/699 (50%), Positives = 487/699 (69%), Gaps = 35/699 (5%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE 
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ +A
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +YR G+GGFR+R RW  E++G
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           RG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+++ P+++++DP
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVDP 240

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRREVL RRS+ RM+ 
Sbjct: 241 EVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRMEK 300

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMVS 419
           ID R+E+L+G ++A+LN+D +I IIR ++ PK                       P   +
Sbjct: 301 IDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPST 360

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             +L+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  ++ LL +   QW+ I  ++
Sbjct: 361 ENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQWDTIIDQL 420

Query: 480 REVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           RE K+ F K       ++GRRRT+F E    ++  L +AMI++EPITVV S  GWIR++ 
Sbjct: 421 RETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMIDREPITVVCSQMGWIRAMT 479

Query: 535 SHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            H +DL+  L FK+GD  +   HA TTDR+L+  ++G+ YT+ A  L  GRG GE ++L+
Sbjct: 480 GH-IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRLM 538

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +DL +   IV   ++ +  KLLV SS G+ FIV E +++A TR GK  L V  + K  + 
Sbjct: 539 VDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRSGKQVLNVRGDAKAMIC 598

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
             VTG  D VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F    GL+W
Sbjct: 599 APVTGDADAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSW 658

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            D AGR+  R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 659 QDPAGRT--RTESDLTEWTGKRATAGRMAPRGFPRDNRF 695


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/737 (47%), Positives = 491/737 (66%), Gaps = 12/737 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SNT   E +   +LR  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + LD 
Sbjct: 2   SNTF--EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDP 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F  RYPL+ GQGNFGNIDGDSAAA
Sbjct: 60  NSPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAA 119

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T VA+ +L+ ++ D VDF  TY+    EPVV P++FPNLLANG+SGIAVGM+
Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HNV EI +A L LI  P  SIE+L++++  PDFPTGGI++      +E Y  GRG
Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RARW VE++GRG W IVVTEIPYQVQKSRLIE+IA+L+I ++ P L ++RDES E+
Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL P+ R+LDP+L+M  +F  SD+E+R   N+NV+  G  P+V+ L GIL+ WL HR
Sbjct: 300 LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             V  RR+S+ ++ I  R+ +L+  LI +LNIDE+I II+  D P PV+++RFSL E Q 
Sbjct: 360 FVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEIQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLR+LRKLEE +I+ E++ L A  + ++++L   K  W  I  E++  ++ F+ 
Sbjct: 420 EAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEFAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT  C  S  D     +  +EKEPI+V++S  GW+++ K H V+   L FK  
Sbjct: 480 V-----RRTEICG-SVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  +   +T   +  +S  GK +T+ A NL +G+G GE +  + DL+    ++ A   
Sbjct: 534 DLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPV 593

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           D   + L+++  G  F V+  ++IAN RKGK  + + S ++   +  V G  V  +  +R
Sbjct: 594 DPEQEYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGSISRSR 653

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +LLIF I+Q P M++GKGVR+Q    D  + DV  F   EG   +DS  ++ + ++ D  
Sbjct: 654 RLLIFPIEQFPLMAKGKGVRVQKLGADEVVVDVTTFTDEEGFV-LDSGKKTKHVTDYD-- 710

Query: 728 GWLGKRGGVGSLVPKGF 744
            W G R G G+++P GF
Sbjct: 711 QWHGNRAGRGAMLPHGF 727


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/625 (50%), Positives = 441/625 (70%), Gaps = 8/625 (1%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA++T++A  +++G+DED+VDFR TY+  + EP V PS  PNLLANG++GIAVGMAT
Sbjct: 2   RYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP HN+ EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE+  +I E+YR G+G 
Sbjct: 62  SIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKGS 121

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           FRVRA+W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED+
Sbjct: 122 FRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAEDI 181

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWL 365
           R+VL P+NR+++ +L+ME +F  +D+E+RF LNMNVL   S G + P VM L  +L+ +L
Sbjct: 182 RLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAFL 241

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR  VL RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+E
Sbjct: 242 DHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPKAELIKTFKLSE 301

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E+++ 
Sbjct: 302 VQAEAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEGRRWTTIAAQNAEIRKA 361

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F  +T LG+RRT   +   A    + +A +E+E IT+V+S +GWIR+LK HS    AL F
Sbjct: 362 FGGATALGKRRTELGDAPSAVVVPI-EAYVEREAITMVLSEKGWIRALKGHSDSPDALKF 420

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD L   L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI   
Sbjct: 421 KEGDQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAAV 480

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V+    KLLV ++    F+VEE+E++A TR GK  L     EK K  +   GD VAV+G
Sbjct: 481 LVHKPGRKLLVATNSDRGFVVEENEVLAQTRAGKMVLNCGDGEKAKFCLPFEGDAVAVIG 540

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F  D+IP M+RG+GV LQ Y+DGG++D+  F + +GLTW  + G    R+E D
Sbjct: 541 ENRKLLVFMADEIPVMTRGRGVILQKYRDGGMADIKVFTLAQGLTW--NLGDRV-RTEAD 597

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  WLGKR  VG L P GFPR+ +F
Sbjct: 598 LTPWLGKRASVGRLPPTGFPRNNRF 622


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/736 (44%), Positives = 468/736 (63%), Gaps = 10/736 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  E ++  ++R  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + LD G
Sbjct: 2   GAVTAEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPG 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + FKKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F QRYPL+ GQGNFGN+DGD AAA 
Sbjct: 62  SGFKKSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T VA+ +L+ +D   VD   TY+    EPVV P++FPNLLANG +GIAVGM+T
Sbjct: 122 RYTEARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMST 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN  E+  AAL LI +P+  + +L++++ GPDFPTGG++V   E + E Y  GRGG
Sbjct: 182 AIPPHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGG 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            R+RARW  E VG G+W +VVTEIPY VQK RLIE+IA+LI+ ++ P L D+RDES   V
Sbjct: 242 LRLRARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAKV 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL P++R LDP+ +M  +F  SD+E R  +N+NV++    P+VM L G+L+ WL HR 
Sbjct: 302 RIVLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRF 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +V  RR++  ++ I  R+ +L+  L  +LNID +IAII+  D P P ++ RF +   Q +
Sbjct: 362 QVHTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+LNLRLR+LR+LEE  I+ E+    A   ++ ++L      W  +  E++  ++ FS  
Sbjct: 422 AVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSD- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              GRR          D     + +I+KEP+T V+S +GWI++LK H +DL  + FKE D
Sbjct: 481 ---GRRTRMAGPAPEID--LRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEED 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L+ A+  ++   +  L+  GK Y+L    L SG+  GE + +L +L+    I+     D
Sbjct: 536 GLERAVKGYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVD 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              +  V +  G  F +   +++AN R GK  + +   ++   V  V G  VA +   R+
Sbjct: 596 PEGEYFVTTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAAVAAISHGRR 655

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           LLI  +++ P + RGKGVR+Q+   G G+ D + F    GL  +DS  R+   +E D   
Sbjct: 656 LLICRLEEFPLLGRGKGVRIQNLGRGEGLVDAMTFDPQAGLV-LDSGKRTRQLTELD--K 712

Query: 729 WLGKRGGVGSLVPKGF 744
           W G RG  G+++P GF
Sbjct: 713 WQGTRGSRGAMLPHGF 728


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/623 (47%), Positives = 427/623 (68%), Gaps = 18/623 (2%)

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           ++G+D   VDF  TYN E+ EP + P  FPNLL NG SGIAVGMAT+IPSHNV E+ +A 
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW------- 256
           L LIDNP +  E+L+E + GPDF TGG +V+S E + E+YR GRG FR+R  +       
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 257 ------CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                  +E +G G W +V++EIPYQV K +LIE+IA+ I  K++P+LED+RDES E +R
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL P++R++DPDLL ESIF L+DMETRF LNMNVL   R P VM L  +L+ W A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           +L RR+ +R+  I+RR+E++ G ++A+LN+D +I IIR ED+PK VM++ FSLT+ Q +A
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKAVMMAEFSLTDRQAEA 300

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE ++K E   LLAE+E+++ LL S  +Q  ++  ++R +++ +++ T
Sbjct: 301 ILNMRLRSLRKLEEMELKQEKSELLAEQEELNKLLESPARQRTRLKKDLRALRKDYAEDT 360

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGD 549
            LG RRT   E + A + ++  AMIEKEP+TV++S +GWIR+ K H VDL+    +KEGD
Sbjct: 361 ALGARRTRIEEAAPAVEFSM-DAMIEKEPVTVILSQKGWIRAAKGH-VDLAQEFKYKEGD 418

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           +L   LHA TTD++L+  +DG+ YTL A  L   RG GE ++ +IDL     I    V+ 
Sbjct: 419 ALAFILHAQTTDKLLIAGSDGRFYTLGADKLPGARGFGEPVRTMIDLPAETQIAAMMVHK 478

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGEN 667
              KLL+ SS G  FI E  E++A T+KGK  + +  + K++++ +V    DHVA VGEN
Sbjct: 479 EGGKLLLASSIGKGFIAETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGEN 538

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RKL++F+++++P M+RG+GV LQ Y+DGG+SD   F + +GL+W         R+END+ 
Sbjct: 539 RKLIVFNLEEMPVMARGQGVMLQRYRDGGLSDATTFVLEDGLSWQMGGSGERTRTENDIW 598

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W   RG  G L P+GFP++ +F
Sbjct: 599 QWKVARGAAGRLPPQGFPKNNRF 621


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 319/739 (43%), Positives = 464/739 (62%), Gaps = 24/739 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+    L+    ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L   + F
Sbjct: 1   MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F   YPL++GQGNFGN+DGD+AAA RYT
Sbjct: 61  KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+ +E +L  ++E+ V+F+ TY+ E  EP + PS+FPN+LANG+SGIAVGMATSIP
Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNVQEICEA + L DNP  SI+ LL++I GPDFPTGGI+ E ++ I ++Y+ GRG F +
Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           ++++ VE++GRG + I VTEIPY V KS+LIEK+A +II K+  LL+ + DES E +RIV
Sbjct: 241 KSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEKIRIV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PKNR+++P+ LM S+F  S+++ +  LNMNVL+    P+VM L  ILK  L HR  +L
Sbjct: 301 LRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIIL 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             + +F+++ I RR+EILKG +I Y N+++II IIRN   PK  ++ ++  T  QVD+IL
Sbjct: 361 NNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVDSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L+K+EE  IK E  NL  EK+++  +LNS   Q  +I  E  EV   F  ++  
Sbjct: 421 EMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTY 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RR+   +  +     L+  +   E I V + N  +++S K  +   S    K  D + 
Sbjct: 481 GPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKS-KKGTYKRSE---KNSDDVS 536

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           + ++  T+D+I LLS  GK+Y L   NL  G   G  I   + L   + IV  FVY    
Sbjct: 537 LIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYKEKQ 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----------SEEKMKLVVKVTGDHV 661
           ++++ S  G  F V+  ++  N + GK    +            ++EK K +V    D++
Sbjct: 597 EIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNL 656

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                  KL+IF + ++P + +G GV L  +K  G        I + L+ ID   +    
Sbjct: 657 KY-----KLIIFELKEVPYLQKGSGVIL--FKTKGFKLNNFCSIDDNLSLIDIDSKKIEL 709

Query: 722 SENDLLGWLGKRGGVGSLV 740
              +L  +L KRG  G ++
Sbjct: 710 G--NLKSFLSKRGKSGKVI 726


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/399 (69%), Positives = 350/399 (87%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G +    F+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGD
Sbjct: 1   GAETDIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIA
Sbjct: 61  SPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR
Sbjct: 121 VGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYR 180

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGGFRVRA+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDE
Sbjct: 181 TGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDE 240

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEW
Sbjct: 241 SAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEW 300

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HRREVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT
Sbjct: 301 LDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLT 360

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++
Sbjct: 361 DNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEA 399


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 465


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 470


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/687 (43%), Positives = 463/687 (67%), Gaps = 12/687 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N + EE +K    +FA  ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L 
Sbjct: 4   NKNNITEEQLKN---QFA--KKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLT 58

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             ++FKKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F  +YPLI+GQGNFGNIDGD+AA
Sbjct: 59  SKSSFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAA 118

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++T+V+E +L+ +  + V+FR TY+ E SEP V P+ FPNLLANG+SGIAVGM
Sbjct: 119 AMRYTETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGM 178

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++EIC + + L ++ + SI  LL+ + GPDFPTGGI+   ++ ++++Y  GR
Sbjct: 179 ATNIPPHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGR 238

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F +RA++ VE++ +G + + +++IPYQV KS+LIEKIA+LII K+  L++++ DES E
Sbjct: 239 GFFELRAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDE 298

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           ++R+V+ PKNR++DP +LM S++  +D+E +F LNMNVL+    P+VM +  IL  +L H
Sbjct: 299 NIRVVIRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R  +L ++S F +  I+ R+EILKG LIA+ N++ II IIRN + PK  +V ++  TENQ
Sbjct: 359 RYIILEKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNPKAELVKKYRFTENQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+AIL+++LRSLRK+EE +IK E   LL +K+ +  LL+S   Q  +I  E+ ++   F 
Sbjct: 419 VNAILDMKLRSLRKIEEKEIKEENSKLLNKKKLLMKLLSSKSLQKKEINKEMEDLILQFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            ++  G R+T   + +R + + L + +   +PIT ++   G++++   +SV      F E
Sbjct: 479 NNSAYGLRKTVIEKFNRIESSELDEELKSTDPITAILLKTGFLKAKIGYSVCKVNADFSE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            + L +  +   +D+ + LS+ GK+YTL   NL+ G   G+       L  N++IV +F+
Sbjct: 539 NEHLYV--NGRKSDKFIFLSSFGKSYTLDGENLVFGSQKGKPFSSYFSLKENEEIVDSFL 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
           Y +  K+L+ SS G  F +    +I+N + GK    +   + +   V++  D  ++ ++ 
Sbjct: 597 YKNNEKILLCSSNGYGFFINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLT 656

Query: 666 ENRK---LLIFSIDQIPEMSRGKGVRL 689
           +N+K     + S+  IP   +G G+ L
Sbjct: 657 KNKKENRASVISMKDIPTQEKGVGIIL 683


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 300/744 (40%), Positives = 465/744 (62%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+ + +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 8   ESNETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ ++++L+ V +  VD+   ++    EP V P++ PNLL NGT+GIAVGMAT +P 
Sbjct: 128 SRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIAVGMATDVPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EI  A + L++NP+  +++LLE++ GPDFPTGG I+ SR  + + Y LG+G  + R
Sbjct: 188 HNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYELGKGQVKAR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+ +E+       IVV E+P+QV  S+++E++A  + AK++P++ D+RDES  +   R 
Sbjct: 248 ARYRIED-----GEIVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDESDHENPTRF 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ PK+  +D + +M  +F  +D+E  + +NMNV+ +  +PQV  L   +KEWL  R +V
Sbjct: 303 VIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIKEWLTFRIDV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + +R  FR+  +  R+ IL+GLL+A+LNIDE+I IIRNEDKPK  ++ RF L+++Q +AI
Sbjct: 363 VRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKPKEELIKRFGLSDSQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IKSE D L  E+E++++LL S ++    I  EI+E  E F     
Sbjct: 423 LELKLRHLAKLEEMRIKSEQDELNKEREQLEALLGSDRKLKKLITEEIKEAIEDFGDE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RRT   E   A +A  ++ ++  +P+TVV+S +GWIR+ K H +D++ L +K GD  
Sbjct: 481 ---RRTPLIERKEA-QAFSEEDLLSNDPVTVVLSKQGWIRAAKGHDIDVTGLSYKSGDEF 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            ++    T   ++L++++G+ Y+L A  L S RG GE I   I L     IV A +    
Sbjct: 537 LLSAKGRTNQTLVLIASNGRTYSLKAHTLPSARGQGEPITGRISLEKGATIVAAVLDSEE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668
              L+ S  G  F+ +  ++ A  + GK  L + S  ++   VKV    GD V VV    
Sbjct: 597 AHYLLASDAGYGFVAQLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGDKVVVVSNEG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEG--LTWIDSAGRSYNRS 722
           ++L FS+  +P+M++GKG ++ S      +D    VI     +   L    S  R  + +
Sbjct: 657 RMLAFSVKSLPQMAKGKGNKMLSIPSSRAADREELVIAMATIQSNDLLVAHSGKRFLSLA 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
           E DL  ++G+RG  G  +P+GF R
Sbjct: 717 EKDLQEYVGERGRRGLKLPRGFQR 740


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 300/747 (40%), Positives = 464/747 (62%), Gaps = 29/747 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+ + +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   ESNETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ A+++L+ V +  VD+   ++    EP V PS+ PNLL NGT+GIAVGMAT IP 
Sbjct: 128 SRLSKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EI  A + L++NP   ++ LL ++ GPDFPTGG I+  +  IV  Y  G+G  + R
Sbjct: 188 HNLREIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETGKGQIKAR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+ +EE       IVV E+P+QV  S+++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 248 ARFTIEE-----GEIVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESDHENPTRL 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ PK+  +D D +M  +F  +D+E  + +NMNV+ +  +PQV PL   L EWL  R +V
Sbjct: 303 VIVPKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLSEWLRFRIDV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  FR+  ++ R+ IL+GLLIAYLNIDE+I IIR E+KPK  +++RF L++ Q ++I
Sbjct: 363 VRRRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKPKVELMARFGLSDMQAESI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E D L  E+++++ LL+S ++    I  EI+E  +      D
Sbjct: 423 LELKLRHLAKLEEMRIKGEQDELEKERKQLEGLLSSDRKLKKLITEEIQEAID------D 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R T     +  +A  ++ ++  +PITVVIS +GWIR+ K H +D++ L +K GD  
Sbjct: 477 FGDDRRTPIVARKEAQAFSEEDLLSNDPITVVISKQGWIRAAKGHDIDVNGLSYKSGDEF 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            ++    +   ++LL+++G+ Y++ A  L S RG GE I   I L  +  IV+A + +  
Sbjct: 537 LVSTKGRSNQTLVLLASNGRTYSIKAHTLPSARGQGEPITGRISLEKDATIVSAVLDNEE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGEN 667
              L+ S  G  F+ +  ++ A  + GK  L +    ++   V     V+G  VA+  E 
Sbjct: 597 AHYLIASDAGYGFVAQLKDLYAKNKAGKATLSLPKGARVMAPVPVQDPVSGRVVAISNEG 656

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSY- 719
           R +L F +  +P+M++GKG ++ S      +D       + C +  + LT    AG+ + 
Sbjct: 657 R-MLAFDVASLPQMAKGKGNKMLSIPSSRAADREELVIALACVQPNDLLTAY--AGKRFI 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
           + +E DL  +LG+RG  G  +P+GF R
Sbjct: 714 SFTEKDLEEYLGERGRRGLKLPRGFQR 740


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/747 (38%), Positives = 453/747 (60%), Gaps = 24/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG  
Sbjct: 184 IPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWRKEESE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL EWL++R
Sbjct: 299 TRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE + RR ++R++ + +R+ IL+GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q 
Sbjct: 359 RETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI    E +  
Sbjct: 419 EAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKKEIMADAETYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +     RR+   E S A +A  +   +  EP+T+V+S  GW+RS K H +D S L++K G
Sbjct: 479 A-----RRSPLQERSEA-RAMSEHDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
               KLL+ S  G  F+   S+++A  R GK  L +    K+   +++ GD   +  + E
Sbjct: 593 ADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITE 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719
             ++L+F +  +P++S+GKG   V + + +     D + + +       LT +    R  
Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHVGKRKL 711

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                DL  +  +RG  G+L+P+G  R
Sbjct: 712 VMKPQDLQKFRAERGRKGTLLPRGLQR 738


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/746 (37%), Positives = 453/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +N + V+LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDNSERVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  V++   ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG  
Sbjct: 184 IPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       IV++ +P+Q   ++++E+IA  + +K++P++ED+RDES  +  
Sbjct: 244 RMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ + R P V  L  IL EWL++R
Sbjct: 299 TRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDLREILTEWLSYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE + RR ++R++ + +R+ IL+GLLIA+LNIDE+I +IR ED+PKPV+V+RF L+E Q 
Sbjct: 359 RETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPVLVARFGLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L +LEE +I+ E D L  E++++ +LL S +    ++A  I+  KEI + 
Sbjct: 419 EAILELKLRQLARLEEMKIRGEQDELAQERDRLQALLASER----KLATLIK--KEIIAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           + + G  R +        KA  +   +  EP+T+V+S  GW+RS K H +D S L++K G
Sbjct: 473 AQNYGDARRSPLHQRAEAKAMSEHDFVPSEPVTIVLSESGWVRSAKGHDIDPSGLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
               KLL+ S  G  F+   S+++A  R GK  L +    K+   + + GD   +  + +
Sbjct: 593 ADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG   V + + +     D + + +    +    +    R   
Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTTLTLHVGKRKLV 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+ +P+G  R
Sbjct: 713 MKPQDLQKFRAERGRKGTQLPRGLQR 738


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/747 (38%), Positives = 451/747 (60%), Gaps = 24/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG  
Sbjct: 184 IPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYRTGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL EWL++R
Sbjct: 299 TRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE + RR ++R++ + +R+ IL GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q 
Sbjct: 359 RETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI    E +  
Sbjct: 419 EAILELKLRHLARLEEVKIRGEQDELAQERDRLQTLLASERKLGTLIKKEIMADAETYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +     RR+   E S A +A  +   +  EP+T+V+S  GW+RS K H +D S L++K G
Sbjct: 479 A-----RRSPLQERSEA-RAMSEHDFVPNEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
               KLL+ S  G  F+   S+++A  R GK  L +     +   +++ GD   +  + E
Sbjct: 593 ADDQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENANVLTPLEINGDDDMLLAITE 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719
             ++L+F +  +P++S+GKG   V + + +     D + + +       LT +    R  
Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHIGKRKL 711

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                DL  +  +RG  G+L+P+G  R
Sbjct: 712 VMKPQDLQKFRAERGRKGTLLPRGLQR 738


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 296/754 (39%), Positives = 452/754 (59%), Gaps = 26/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +NT+ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTETNTIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   
Sbjct: 61  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ ++ +L E I GPD+PT   I+ SRE I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGG R+RA W  E        IVVT +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGGLRMRAVWDTEH-----GDIVVTALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+N++ +   P V  LDGILK
Sbjct: 296 SDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSLDGILK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RRE + RR  +R++ + RR+ IL+G L AYLNIDE+I IIR E+ PK  +++RF 
Sbjct: 356 QWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR+L KLEE +I+ E D L  E++ ++  L S  +    I  E+  +
Sbjct: 416 LSDIQAEAILELKLRNLAKLEEMKIRGEQDELEKERDWLEKTLGSEARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A +A  +  ++  +PITVV+S +GWIR+ K H +D ++
Sbjct: 476 AEKYGDD-----RRSPLASREEA-QAFSELELMTADPITVVLSEKGWIRAAKGHDMDPAS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + DS  + L+ S  G  FI    E+    R GK  L + +  ++     +  D   
Sbjct: 590 DGLMMGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-------EGLT-WI 712
           VA V    +LL+F +  +P +SRGKG ++ +       D   F I        +GLT W 
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEFMIATAVLRENDGLTVWA 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +  RSE  L  + G+RG  G+ +P+GF R
Sbjct: 710 GKRHLTLKRSE--LEHYHGERGRRGNKLPRGFQR 741


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/746 (38%), Positives = 453/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P+ S+E LL Y+ GPDFPT   I+  R+ I + Y  GRG  
Sbjct: 184 IPPHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYESGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS  +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA R
Sbjct: 299 TRLVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q 
Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E  + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    + 
Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
               +LL+ S  G  FI   ++++A  R GK  L +    ++   +++  D   +  +  
Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDHARVLPPLELQRDDELLLTITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720
             +LL+F +  +P +S+GKG ++ S     ++   D I + +    +    + +  R Y+
Sbjct: 653 AGRLLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMTIAPQSSVTLYAGKRKYS 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L  +   RG  G+ +P+G  R
Sbjct: 713 LRPEELQKYQASRGCKGTALPRGLQR 738


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/751 (39%), Positives = 450/751 (59%), Gaps = 24/751 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L EE+ ++VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MSDMPMLPEED-ESVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   
Sbjct: 60  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+ +L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 120 SFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P+ ++++L E+I  PDFPT   I+  R+ I   YR
Sbjct: 180 VGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIKAFYR 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+V  +P+QV  ++++E+IA  + AK++PL+ D+RDE
Sbjct: 240 SGRGSIKMRAHWRKED-----GAIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVNDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D D LM  +F  +D+E  + +N+N++     P V  LD IL+
Sbjct: 295 SDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLDAILR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R++ + +R+ +L+G LIAYLNIDE+I IIR EDKPKPV++ RF 
Sbjct: 355 EWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPVLMQRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +A+L L+LR+L KLEE +I+ E D L  E+E+++  L S  +    I  E+  V
Sbjct: 415 LSDAQAEAVLELKLRNLAKLEEMKIRGEQDELEKEREQLELTLGSTARMRTLIKKELLAV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F      G  R++        KA  ++ ++  EPITVV+S +GWIR+ K H +D ++
Sbjct: 475 AEQF------GDERSSPLVAREEAKAFSEKELMSTEPITVVLSEKGWIRAAKGHDIDPTS 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+  +A    +    +L+ + G+AYTLP  NL S RG GE +   I        
Sbjct: 529 LSYKAGDNFNLAAAGRSNQSAILIDSTGRAYTLPTHNLPSARGQGEPVTGRISPPPGVGF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
               + D   K+L+ S  G  F+ E   ++A  + GK  L + +  ++    +V  GD  
Sbjct: 589 KALLLGDERQKILLASDAGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDL 648

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWID 713
            VA V    +LL+F +  +PE++RGKG ++ S     +         I     E    + 
Sbjct: 649 LVAAVSTEGRLLVFPLADLPELARGKGNKILSVPSARVKSREEMVKGIAVLTQESRLVLH 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +  R      ++L  + G+RG  GS +P+G 
Sbjct: 709 AGKRHLTLKVSELDHYRGERGRRGSKLPRGL 739


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG R     
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKANSREEVLSNLMVLPQGASITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+L+P+G  R
Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 294/741 (39%), Positives = 439/741 (59%), Gaps = 23/741 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+G+   A +KKSAR VG+
Sbjct: 13  LREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYKKSARTVGD 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEAR+T+ A
Sbjct: 73  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRYTEARLTRYA 132

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           +L+L  + E  V++   ++    EP + P++ PNLL NG++GIAVGMAT IP HN++E+ 
Sbjct: 133 QLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIPPHNLREVV 192

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A + L+D P+ S+  L E I+GPDFPT   I+   E I   Y +G GG R RA W    
Sbjct: 193 AACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQRACW---- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
             R    IV+T +PYQV  S+++E+IA  + +K++P++ED+RDES  D   R+++ P++ 
Sbjct: 249 -ERDGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTRLIITPRSA 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D + LM+ +F  +D+E  + +N+NV+ +   P+V  L  IL EWL  R E + RR  +
Sbjct: 308 RVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRTETVCRRLQW 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R+  ++ R+ +L G LIA+LNIDE+IAIIR EDKPK V++ RF LTE Q +AIL LRLR 
Sbjct: 368 RLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLVLMERFGLTERQAEAILELRLRH 427

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE +I +E D LL E++++ S+LNS  +    I  E++E  + +      G  R +
Sbjct: 428 LAKLEEIKIHAEQDELLRERDRLRSILNSEARLKALIKSELQEDAQKY------GDPRCS 481

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
                 + +A     ++  EP+T+V+S RGWIR+ K H VD   L +K GD  + A    
Sbjct: 482 PLVQRGSARALSDTELVPSEPVTLVLSQRGWIRAAKGHDVDAQRLSYKAGDGYRDAAIGR 541

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           T  + + L + G+AY+LPA  L S RG GE +   + L    +     + D     L+ S
Sbjct: 542 TNQQAVFLDSQGRAYSLPAHTLPSARGQGEPLTGRLSLPGGGEFSYVLLGDPDSLWLLAS 601

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGENRKLLIFSI 675
             G  FI     + +  R GK  L V+      K   +  +  D +       +LL+F +
Sbjct: 602 DHGYGFITRLGNLYSKNRAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTAGRLLVFPL 661

Query: 676 DQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGW 729
            ++PE+ +GKG   +++ S +     +V+     +  G   I  AG R+     +DL  +
Sbjct: 662 QELPELGKGKGNKLIQIPSPRLKTREEVVAGVLAVPPGRAVILQAGKRTLTLRPSDLERY 721

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           LG+RG  G  +P+GF R  +F
Sbjct: 722 LGQRGRRGDALPRGFQRVQQF 742


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 291/751 (38%), Positives = 455/751 (60%), Gaps = 30/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  A +A++DNP  S++ ++EYI GPD+PT   I+ S+E I + Y+ GRG  
Sbjct: 184 IPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ PKN  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE +  R ++R++ + +R+ IL GLL AYL+IDE+I IIRNED+PKPV++ RF LTE Q 
Sbjct: 359 RETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPVLMQRFELTETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDGLAKERDKLQAILGSERKLSTLLK------KEIIAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           + + G  RR+   E S A KA     ++  EPITVV+S  GW+RS K H +D + L++K 
Sbjct: 473 AENYGDHRRSPLKERSEA-KAMSDHDILPSEPITVVLSEMGWVRSAKGHEIDPAGLNYKS 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTAF 606
           GDS + A    +   ++ + T G++Y++   +L S RG GE +   L+ L     I    
Sbjct: 532 GDSFRSAARGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLLALPAGASIEHLL 591

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----VA 662
           +     K L+ S  G  FI   S++IA  R GK  + +    K+   +++T +     +A
Sbjct: 592 IAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLLA 651

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
           +  E R +L+F +  +P++S+GKG ++ S         +  +S ++   +   +T     
Sbjct: 652 ITKEGR-MLMFPVADLPQLSKGKGNKIVSIPAAQAASGEDMLSWLLVLPVQSSITLYFGK 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +   R E DL  +  +RG  G+ +P+G  R
Sbjct: 711 RKLLLRPE-DLQKFRAERGRKGTSLPRGLQR 740


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/744 (38%), Positives = 455/744 (61%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H+VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG R     
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+L+P+G  R
Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/745 (38%), Positives = 455/745 (61%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L + +L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHSLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGSSIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 451/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P+  +E LL ++ GPDFPT   I+  R+ I + Y  GRG  
Sbjct: 184 IPPHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYESGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS  +V+T +P+QV  +R++E+IA  + AK++P+L+D+RDES  +  
Sbjct: 244 RMRAVWRKED---GS--VVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA R
Sbjct: 299 TRLVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGLREILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q 
Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E  + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    + 
Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGASIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               +LL+ S  G  FI   ++++A  R GK  L +    ++   L ++   D +  +  
Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P +S+GKG ++ S     ++   D I + +    +    + +  R Y+
Sbjct: 653 AGRMLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMAIAPQSSVTLYAGKRKYS 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L  +   RG  G+ +P+G  R
Sbjct: 713 LRPEELQKYQASRGCKGTSLPRGLQR 738


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ L++NP+ S+E+LL+++ GPDFPT   I+  R+ + + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q 
Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQSDAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E S A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLRERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS +      +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAVAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
                LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD    +A+  
Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719
             R +L+F +  +P++S+GKG ++ S     IS     +  + LTW+       S    +
Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706

Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746
            + +     N+L  + G+RG  G+L+ +G  R
Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG R     
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+L+P+G  R
Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/745 (38%), Positives = 453/745 (60%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E+ K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERNKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG R     
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+L+P+G  R
Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 287/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG R     
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+L+P+G  R
Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 285/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELERERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q 
Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQTYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E S A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLYERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
                LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD    +A+  
Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719
             R +L+F +  +P++S+GKG ++ S     IS     +  + LTW+       S    +
Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706

Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746
            + +     N+L  + G+RG  G+L+ +G  R
Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 283/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ L++NP+ S+++LL+++ GPDFPT   I+  R+ + + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q 
Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 E-----RRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
                LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD    +A+  
Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719
             R +L+F +  +P++S+GKG ++ S     IS     +  + LTW+       S    +
Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706

Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746
            + +     N+L  + G+RG  G+L+ +G  R
Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/727 (39%), Positives = 436/727 (59%), Gaps = 20/727 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   +  KKSAR VG+VIGK 
Sbjct: 36  EQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSELGLTAASKHKKSARTVGDVIGKF 95

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGNFG+ D   S AA RYTE+R+T  A  +L 
Sbjct: 96  HPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPDDPKSFAAMRYTESRLTAYAHSLLA 155

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++  VD++  ++    EP + P++ PN+L NG  GIAVG++T IP HN++E+  A +A
Sbjct: 156 EAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMGIAVGLSTDIPPHNLREVVAATIA 215

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+D PE +++ L  ++ GPDFPT   I+   + I++ YR G G  R RAR+ VE+     
Sbjct: 216 LLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQMYRTGTGSVRQRARYEVEQ----- 270

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             I++T +P+QV  S+++E+IA  + AK++PL+ D+RDES  +   R+V+ P++R +D +
Sbjct: 271 GEIIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLRDESDHEAPTRLVIIPRSRQVDAE 330

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM  +F  +D+E  + +NMNV+++   P+VM L  +L EWL  RR+ L RR  +R+  +
Sbjct: 331 ALMAHLFATTDLEKSYRVNMNVIALDGRPRVMNLKDLLSEWLQFRRQTLTRRIQWRLAKV 390

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+EIL GLLIA+LNIDE+IA+IR  D+PK  +++RF LTE Q +AIL +RLR L KLE
Sbjct: 391 ENRLEILAGLLIAFLNIDEVIAVIREADEPKAELIARFDLTERQAEAILEIRLRQLAKLE 450

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E  IK E   L+AE E +  LL    +  N +  E+++  + +  +     RR+    V+
Sbjct: 451 EIAIKKEQGELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDA-----RRSRL--VT 503

Query: 504 R-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           R A +A  + A+I  EP+TVV+S  GWIR+ K H VD  AL +K GD   + ++  +T  
Sbjct: 504 RGAAQALAETALISSEPVTVVLSKNGWIRAAKGHDVDPVALSYKAGDGYLVHMNGKSTQS 563

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++LL   G+AYTL A +L S RG GE +   +            + D    +L+  S G 
Sbjct: 564 VILLDDTGRAYTLAAHSLPSARGQGEPLTGRLSPPTGAQFNQMVMADDKDAVLLWQSGGY 623

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE 680
            FI    E+++  R GK  + +     +   +++      +A    +  +LI    +IP+
Sbjct: 624 GFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQRIAFASSDGHVLILERAEIPQ 683

Query: 681 MSRGKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +S+G+G +L   K G      C  +  EGL  + S  RS    + D   + G R   G +
Sbjct: 684 LSKGRGNKLMGLKSGFTLIAACALVEGEGLK-VQSGARSVTLRDVDFDNYGGARASRGRI 742

Query: 740 VPKGFPR 746
           +P+GF R
Sbjct: 743 LPRGFQR 749


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/743 (37%), Positives = 452/743 (60%), Gaps = 23/743 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR V
Sbjct: 14  ISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKASAKYKKSARTV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y+++V +AQPF  RY L+ GQGN+G+ D   S AA RYTE+R+T+
Sbjct: 74  GDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPKSFAAMRYTESRLTK 133

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            +E++L  + +  VD++  ++    EP VFP++ PNLL NGT+GIAVGMAT IP HN++E
Sbjct: 134 YSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNGTTGIAVGMATDIPPHNLRE 193

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + L+DNP+ S+  L ++++GPD PT   I+  R+ +++ Y  GRG  R+RA W  
Sbjct: 194 VVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDELIKMYETGRGSVRMRAVWQK 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           +E    S  IV+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +   R+V+ P+
Sbjct: 254 DE---ESGDIVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRLVVVPR 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + +M+ +F  +++E  + +NMNV+ +   P V  L  IL EWL+ R     RR 
Sbjct: 311 SNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSLSKILGEWLSFRTVTTRRRL 370

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R+  ++RR+ +L+GLLIA+LN+DE+I IIR ED PK  ++ RF LTE+Q + IL  +L
Sbjct: 371 QYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDPKAELMKRFGLTEDQTEYILETKL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E  +L  E++++ S+L S  +  N +  E+ +  E +        RR
Sbjct: 431 RQLARLEEMKIRGEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQYGDD-----RR 485

Query: 497 TTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    V RA+   L +  ++  EPITVVIS++GWIRS K H +D + L +K GDS K A+
Sbjct: 486 SPI--VVRAEAQALSETELMSVEPITVVISDKGWIRSAKGHDIDPTGLSYKAGDSFKFAV 543

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           H  +   ++LL + G++Y +PA NL S RG GE +   I+           +     ++L
Sbjct: 544 HGKSNQNVILLDSTGRSYAIPAHNLPSARGQGEPLSGRINPPSGATFEGVLMGADDQRVL 603

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLI 672
           + S  G  FI +  ++ +  + GK  L +    ++   +L+       +A V  + +LL+
Sbjct: 604 LASDAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRLLV 663

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEG-LTWIDSAGRSYNRSENDL 726
           F + ++PE++RGKG ++ +      +      V    I  G +  + S  R+      DL
Sbjct: 664 FPVTELPELARGKGNKIMNIPSARAAAREEFVVAVSVILPGQVLTLYSGKRTITLKLGDL 723

Query: 727 LGWLGKRGGVGSLVPKGFPRSGK 749
             + G+RG  G+ +P+GF +  K
Sbjct: 724 EHYKGERGRRGNKLPRGFQKVDK 746


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 290/747 (38%), Positives = 448/747 (59%), Gaps = 24/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIK------KEILAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +   G  RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K 
Sbjct: 473 AAAYGDDRRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    +
Sbjct: 532 GDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVG 665
                KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  + 
Sbjct: 592 AADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSIT 651

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDVICFKICEGLTWI--DSAGRSY 719
              ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R  
Sbjct: 652 AAGRMLMFPVADLPELSKGKGNKIVSIPAADAATGKDRLVWLFVLPPQTSITLHFGKRKL 711

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                DL  +  +RG  GS +P+G  R
Sbjct: 712 TLRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 452/746 (60%), Gaps = 21/746 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N   + E+ V+  SLR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL 
Sbjct: 2   NDIVIGEDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLK 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
            G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S 
Sbjct: 62  AGSKYKKSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSF 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+++T+ AE++L  + +  VD++  ++    EP   PS+ PN+L NGT+GIAVG
Sbjct: 122 AAMRYTESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+  A + ++DNP+   E+LL+YI GPDFPT   I+  +  + + Y  G
Sbjct: 182 MATDIPQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  ++RA +  E+       IV+T +P+Q   ++++E+IA+ +  K++P++ D+RDES 
Sbjct: 242 RGSVKMRAVYTRED-----GDIVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESD 296

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ PK+  +D + LM  +F  +D+E  + +N+N++ +  +PQV  LD I+KEW
Sbjct: 297 HENPTRLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLDMIIKEW 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L +R   + RR   R+  +  R+ IL GLL+A+LNIDE+I IIR+ED+PK  ++ RF L+
Sbjct: 357 LEYRITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEPKQELIKRFGLS 416

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL L+LR L KLEE +IK E D L  E+++++  L S ++    +  EI    E
Sbjct: 417 DKQAEAILELKLRHLAKLEEMKIKGEQDELSKERDQLEKTLGSERRLKTLVKKEITADAE 476

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            +        RR+    VSR +   L +  ++  +P+TVV+S +GWIR+ K H VD + L
Sbjct: 477 TYGDD-----RRSPI--VSRDEAQALSEIDLMGADPVTVVMSEKGWIRAAKGHDVDGTGL 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            +K GD   I  +A T  + + L T G+AY++    L   RG+GE +   I+L   Q I 
Sbjct: 530 QYKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNIHGLPGARGYGEPVTGSINLASGQKIS 589

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           T  +     + L+ S  G  FI +  ++++  + GK  L    ++ +   VKV+    D 
Sbjct: 590 TMVIGQPKDQYLMASEAGYGFITQYEDMVSKNKAGKALLNKPDDKAIHSPVKVSDVEQDW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSY 719
           V  V    +LL F +  +P M++GKG ++ +    G   +I   +  EG   I +AG+ +
Sbjct: 650 VVAVSNEGRLLTFPVADLPVMAKGKGNKIINLGTSGDEVLIGISLMKEGDMLIVNAGKRH 709

Query: 720 NRSE-NDLLGWLGKRGGVGSLVPKGF 744
            + + +DL  + G+RG  G+ +P+GF
Sbjct: 710 VKMKFSDLEHYQGERGRRGNKLPRGF 735


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 288/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 ADDQKLLMASDVGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 283/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG  
Sbjct: 184 IPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q 
Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E S + KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLHERSES-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS +      +   ++ + + G++Y L   +L S RG GE +   +       I    + 
Sbjct: 533 DSFRAVAKGKSNQPVVFIDSTGRSYALDPISLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
                LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD    +A+  
Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719
             R +L+F +  +P++S+GKG ++ S     IS     +  + LTW+       S    +
Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706

Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746
            + +     N+L  + G+RG  G+L+ +G  R
Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 455/749 (60%), Gaps = 23/749 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + + EE ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SMMFEEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA
Sbjct: 62  AKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSADDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ + AE++L  + +  VD+   ++    EP + P++ PNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +A + ++D+P+ ++E+L EYI GPDFP+GG IV SR  + + Y  GRG
Sbjct: 182 TDIPPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA++  E        IVVTE+P+QV  +R++E+IA+ + AK++P++ D+RDES  +
Sbjct: 242 SVKMRAKYTKE-----GQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L+EWL 
Sbjct: 297 NPTRLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R + + RR  +R+Q +  R+ IL+GLL+A+LNIDE+IAIIR+EDKPKPV++ RF L++ 
Sbjct: 357 FRTQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPVLMERFGLSDV 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + +L+ +LR L +LEE +I++E D L  E++K++ +L S  +    +  E+++  E F
Sbjct: 417 QAEYVLDTKLRQLARLEEMKIRAEQDELEKERKKLEDILGSEAKLRKLVKTELKQDMETF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A +A  +  +I  EP+TVV+S +GW+R+ K H +D   L +K
Sbjct: 477 GDE-----RRSPIVERKEA-QAFSETDLIASEPVTVVLSEKGWVRAAKGHDIDAQGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD    A    +    + L   G++Y + A +L S RG GE +   ++           
Sbjct: 531 AGDKFLAAAKGRSHQNAIFLDDTGRSYCVAAHSLPSARGQGEPLTGRVNPPSGAGFTHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAV 663
           +   + K+++ S  G  F+    ++ +  R GK  + +     +    L+ +    H+  
Sbjct: 591 MGPDSMKVVLASDAGYGFVARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAGRS 718
           +    ++L+F + ++PE+++GKG   + + S +     +V+     + E  T +  AG+ 
Sbjct: 651 ISNEGRMLVFPVSELPELAKGKGNKIIGIPSARAQAREEVMSNLAVVGEKDTLVLHAGKR 710

Query: 719 YNR-SENDLLGWLGKRGGVGSLVPKGFPR 746
           + + + +DL  +LG+RG  G  +P+G  R
Sbjct: 711 FLKLTFDDLSHYLGERGRRGHKLPRGLQR 739


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/746 (38%), Positives = 452/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P+  ++ LL Y+ GPDFPT   I+  R+ I + Y  GRG  
Sbjct: 184 IPPHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS  +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D DL+M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA R
Sbjct: 299 TRLVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q 
Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++  + +  EI+E  + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNSLLKKEIQEDAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 E-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    + 
Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               +LL+ S  G  FI   ++++A  R GK  L +     +   L ++   D +  V  
Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTVTA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S     ++   D I + +         + +  R Y+
Sbjct: 653 AGRMLLFPVADLPELSKGKGNKIVSIPAAQLASGDDRILWLLAIAPHSSVTLYAGKRKYS 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L  +   RG  G+ +P+G  R
Sbjct: 713 LRPEELQKYQASRGCKGTALPRGLQR 738


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/745 (38%), Positives = 452/745 (60%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+  RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWITFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIR ED PK V+++RF+LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAVLMARFNLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L +K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDGQSLSYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++S+GKG ++          ++  +S+++       +T + +  R    
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+L+P+G  R
Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 285/735 (38%), Positives = 440/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+GL+  +  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y  G G  R RA +  
Sbjct: 195 IVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYETGNGSVRARATFTK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDES  A  VR+VL P+
Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L EWL  R   + RR 
Sbjct: 310 SNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF L+++Q + IL  +L
Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSDDQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L +LEE +I+ E D L  E+EKI  +L+S K +  ++   IR+  E+ + +   G  R
Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KAKLKKL---IRD--ELTADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +     +A +A  +  ++  EP+TVV+S +GWIR+ K H VD SAL +++GD+L+ A+ 
Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASALSYRDGDALQGAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A +T ++  L ++G+AY+ P   L S RG+GE +            VT    +   + ++
Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAPGTSFVTLASAEPETRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            SS G  F+     +I   + GK  L +S+   +    +V  V  D +  V  +  LL  
Sbjct: 604 ASSHGYGFVTRFENLIGRNKAGKAMLNLSAGSSVLIPSVVANVATDRIVAVTSSGNLLAI 663

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729
           + + +PE+ +GKG ++       ++    V    I  G T  + S  R+     N+L  +
Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723

Query: 730 LGKRGGVGSLVPKGF 744
           LG R   G L+P+G+
Sbjct: 724 LGARATRGHLLPRGW 738


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/691 (40%), Positives = 418/691 (60%), Gaps = 32/691 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V+GK 
Sbjct: 29  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVVGDVLGKY 88

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 89  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 148

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+    EP + P++ P  L NG SGIAVG+AT IPSHN++E+  AA+AL
Sbjct: 149 IDQGTVDFMPNYDGSFEEPKLLPARLPFALLNGASGIAVGLATEIPSHNLREVAAAAVAL 208

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP+++   L++ + GPDFP GG I+ S   I  +Y +GRG  +VRARW +EE+ RG W
Sbjct: 209 IRNPKLTHADLMQLVPGPDFPGGGQIISSDAEISAAYEVGRGSLKVRARWKIEELARGQW 268

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308
            +VV E+P      +++E+I EL   K                   + LL+ +RDES +D
Sbjct: 269 QLVVNELPPNTSCQKVLEEIEELTNPKIKAGKKTLTQEQANTKKTLLDLLDAVRDESGKD 328

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+R+LD +  ++S+   + +E+  PLN+ ++     P    L  IL EW+ 
Sbjct: 329 APVRLVFEPKSRALDQNEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGAILGEWVG 388

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F L+E 
Sbjct: 389 FRQLTVTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLSER 448

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +KEI 
Sbjct: 449 QAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLA------NESAMKRLLIKEIE 502

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +   G  R T   + +  +AT +  +I+ EP+TVV+S +GW+R+LK H +D ++  FK
Sbjct: 503 GDARQFGDDRRTL--IQQEKRATFEARVID-EPVTVVVSQKGWVRALKGHGLDPASFSFK 559

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   + G+ +++P   L  GRG G  +  LI+L     ++  F
Sbjct: 560 AGDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLIELESGTHLMHYF 619

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVV 664
              +   LL+ SS G  FI +  ++I+  + GK F+ +   +     + V      VA +
Sbjct: 620 AAGAEQPLLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEGAVPLAPMPVMPLATQVACL 679

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +LL+F +D++  +S  G+GV L + +D
Sbjct: 680 SAQGRLLVFGLDEMKTLSAGGRGVILMALED 710


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 285/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+GL+  +  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++  L E++ GPD+P+   I+ +   +   Y  G G  R RA +  
Sbjct: 195 IVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYETGNGSVRARATFNK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDES  A  VR+VL P+
Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL  R   + RR 
Sbjct: 310 SNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF L+E Q + IL  +L
Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L +LEE +I+ E D L  E+EKI  +L+S K +  ++   IR+  E+ + +   G  R
Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KAKLKKL---IRD--ELTADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +     +A +A  +  ++  EP+TVV+S +GWIR+ K H VD SAL +++GD+L+ A+ 
Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASALSYRDGDALQGAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A +T ++  L ++G+AY+ P   L S RG+GE +            VT    +   + ++
Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSFVTLASAEPDARFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            SS G  F+     +I   + GK  L +SS   +    +V  V  D +  V  +  LL  
Sbjct: 604 ASSHGYGFVTRFENLIGRNKAGKAMLNLSSGSSVLTPSMVANVATDRIVAVTSSGNLLAI 663

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729
           + + +PE+ +GKG ++       ++    V    I  G T  + S  R+     N+L  +
Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723

Query: 730 LGKRGGVGSLVPKGF 744
           LG R   G L+P+G+
Sbjct: 724 LGARATRGHLLPRGW 738


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/751 (37%), Positives = 452/751 (60%), Gaps = 25/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNPE  +  +++Y+ GPD+PT   I+  R  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DVVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P+V  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK V+++RF ++ 
Sbjct: 357 EFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAVLMARFGISA 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELAKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + + KA  ++ ++  E ITVV+S +GW+R  K H VD  +L +
Sbjct: 477 YGDD-----RRSPLIERAES-KALTERDLVPSEAITVVLSEKGWVRHAKGHDVDCQSLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  +++ L +DG++Y+L A +L S R  GE I   +++     I   
Sbjct: 531 KSGDQYLAHACGKSNQQVVFLGSDGRSYSLEAHSLPSARTQGEPITGRLNITEGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  E+++  R GK  + +    ++   +  V +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++          ++  +S +I       +T + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLTKGKGNKIINIPAAKSKEREEFVSHLISLPQGAAIT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            R      +DL  + G+RG  GSL+P+G  R
Sbjct: 710 KRKLGLKASDLENFRGERGRRGSLLPRGLQR 740


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/746 (37%), Positives = 454/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALIDNP+ +++ LL+++  PDFPT   I+ SR+ + + Y  GRG  
Sbjct: 184 IPPHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYETGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS  +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D++M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA R
Sbjct: 299 TRLVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGLQEILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR SFR+  + +R+ +L+GLL+A+LNIDE+I IIR+ED+PKPV+++RF L++ Q 
Sbjct: 359 RDTVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPVLMARFGLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+++I  +L S ++  + +  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQIQDILASERKMSSLLKKEIQADAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA  +  +   EP+T+V+S  GW+RS K H +D S L++K G
Sbjct: 479 D-----RRSPLQERAEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ + A    +   ++ + + G++Y L    L S RG GE +   + L     +    + 
Sbjct: 533 DNYRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATVEQVLMT 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
               +LL+ S  G  FI   S+++A  R GK  L +    K+   ++V+ D   +  +  
Sbjct: 593 ADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLALPDNAKVLPPLEVSHDDDLLLTITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL----QSYKDGGISDVICFKICE--GLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG ++     +    G   ++  ++        + S  R Y 
Sbjct: 653 AGRMLLFPVADLPQLSKGKGNKIVAIPAAQAASGEDRILWLQVISPRATVTLHSGKRKYA 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L  +   RG  G+ +P+G  R
Sbjct: 713 LRPEELQKFTASRGCKGTTLPRGLQR 738


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/681 (40%), Positives = 427/681 (62%), Gaps = 17/681 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  ++ + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSSQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL 689
           ++L+F I  +P++S+GKG ++
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/746 (37%), Positives = 459/746 (61%), Gaps = 27/746 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +  VD++  ++    EP   PS+ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  A +ALID+P + ++ LLE++ GPD+PT   I+  +  + + YR GRG  ++R
Sbjct: 187 HNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELKKLYRDGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           ARW      + +  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  +   RI
Sbjct: 247 ARWH-----KDNGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F+ +D+E  + +N+N++ +   PQV  L  IL EWL  RRE 
Sbjct: 302 VIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGLLKILTEWLEFRRET 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+PK  ++SRF L+E Q +AI
Sbjct: 362 VRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPKKELMSRFGLSEKQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+E+++ +L S ++    +       KEI + +  
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELNKEREQLEKVLGSERRMNTLLK------KEILADAEK 475

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD ++L +K GDS
Sbjct: 476 YGDERRSPLVERAEA-KAMTERDLIPSEPITVVLSEKGWIRHAKGHDVDPTSLSYKSGDS 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +   ++ + +DG++Y L +  L S R  GE I   +++     +    + ++
Sbjct: 535 YLASARGKSNQPVVFIGSDGRSYALESHTLPSARSQGEPITGRLNITAGTAVRHVMMGEN 594

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
              +L+ S  G  F+ ++ ++++  R GK  L +    ++    +V    T D VA+  E
Sbjct: 595 DNLVLMASDAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVAITNE 654

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYN 720
            R +L+F + ++P++ +GKG   + + S +     +++   F I +G +    AG R  +
Sbjct: 655 GR-MLVFPVKELPQLGKGKGNKIINIPSARAKAREELLTQLFVIPQGASVTLHAGKRKLS 713

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               D+  + G+RG  GS++P+G  R
Sbjct: 714 LKPTDIDNFRGERGRRGSMLPRGLQR 739


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 290/749 (38%), Positives = 447/749 (59%), Gaps = 28/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   + +
Sbjct: 7   TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIAVGMAT I
Sbjct: 127 TESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+  A + L+D PE ++++L E+I GPDFPT   I+  R+ I + Y  GRG  R
Sbjct: 187 PPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYETGRGSLR 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RARW      R S  IVVT++P+QV  +R++E+IA  +  K++P++ D+RDES  +   
Sbjct: 247 MRARWI-----RESGEIVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDESDHENPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL EWL  RR
Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTEWLTFRR 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR   R+  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  +++RF L+ +Q +
Sbjct: 362 TTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKAELMARFGLSADQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E++   E F   
Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELAAERDELQSILGSEDRLRELIKSEMQADAETFGDD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  +I  +P+TVV+S +GW+R+ K H ++   L +K GD
Sbjct: 482 -----RRSPIVEREEA-KAFSEVDLISNDPVTVVLSEKGWVRAAKGHDIEPEGLSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              +A       + + L + G+AY+L A +  S RG GE +   I+           + D
Sbjct: 536 RFSLAARGRNNQQTIFLDSTGRAYSLMAHSFPSARGQGEPLTGRINPPSGASFSGLLMGD 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGD--HVAVVG 665
            + K L+V+  G  F+   +++I+  R GK  + V    ++   L +  T    ++  V 
Sbjct: 596 PSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLYLGAVS 655

Query: 666 ENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
              ++L+F + ++PE+++GKG         R+QS ++  ++ V  F   + L  I +  R
Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQSREEYVVA-VAVFAEDDQLE-IRAGKR 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                 +DL  +LG+RG  G  +P+G  R
Sbjct: 714 KMGLQFSDLEHYLGERGRRGHKLPRGLQR 742


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/756 (37%), Positives = 453/756 (59%), Gaps = 27/756 (3%)

Query: 9   SNTLVEENVKAVSLRFAL-------EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           S+TLV +  KA  L           E  YL YA+  I +RA+P + DG KPV RRI++AM
Sbjct: 2   SDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL   A  KKSAR +G+VIGK HPHGD + Y+++V ++QPF  RYPLISGQGNFG+ 
Sbjct: 62  SELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGSP 121

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTEA+++  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT
Sbjct: 122 DDPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNGT 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT IP HN+ E+ +  +AL+  P ++ ++L +YI  PD PT   I+ S E ++
Sbjct: 182 TGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDLL 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y+ GRG +++RA + V++  +    +++  +PYQ+  +++IE+IA LI AK++P + D
Sbjct: 242 QLYKTGRGSYKMRATYHVDDKEKN--LVIIDALPYQISGNKIIEQIANLINAKKLPWVTD 299

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I DES      RIVL  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  L 
Sbjct: 300 IHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKSLL 359

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EWL+ RR+ + RR  +R+  I++R+ IL GLLIAYL+IDE+I IIR E+ PK  ++
Sbjct: 360 TILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDPKAELM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +R+ LTE+Q +AIL++RLR L +LEE ++K E  +L AEK +I+  LN+  +    +   
Sbjct: 420 TRYDLTESQANAILDIRLRQLARLEEIELKREQSDLEAEKAQIEGYLNNPDKLTGLM--- 476

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHS 537
              ++E+ +   + G +R +   V R +   L++  +   EP+TV++S  GWIRS K H 
Sbjct: 477 ---IEELTADMKEHGDKRQSPI-VERTEATALKETDLAPSEPVTVIVSKSGWIRSAKGHD 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD + ++++ GD+        + +++ L+   G++Y L A  L S RG GE +  L+   
Sbjct: 533 VDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDAHTLPSARGQGEPLTSLLKPT 592

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                V   +     KL++ SS+G  FI   +++  N + GK    ++ ++   L+    
Sbjct: 593 GGASFVNVLMGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNV--INFDDAFSLITHQI 650

Query: 658 GDH---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWID 713
           G+    V VV     LL++ + ++P M +GKG +L   KDG  +  +  F   + L+ +D
Sbjct: 651 GEQDTLVGVVSSAGHLLVYPLTELPMMKKGKGNKLIDLKDGDSVVAITTFSEGDSLS-LD 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           S  R+      D+  ++G RG  G L+PKGF +  K
Sbjct: 710 SGKRTLTLKPMDIANFMGARGKRGGLLPKGFQKVSK 745


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/746 (37%), Positives = 453/746 (60%), Gaps = 26/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +  V+++  ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RQRAVWKKEE-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++IL L+LR L KLEE +I+ E  +L  E++++ + L S ++    +       KE+ + 
Sbjct: 419 ESILELKLRHLAKLEEMKIRGEQADLEKERDQLQATLASERKMNTLLK------KELQAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           S   G  RR+  CE   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K 
Sbjct: 473 SASYGDERRSPLCEREEA-KALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    +
Sbjct: 532 GDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVLM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVG 665
                +LL+ S  G  FI   S++I+  R GK  L +    ++   + V    D +  + 
Sbjct: 592 EPDDQRLLMASDAGYGFICTFSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAIT 651

Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRS 718
           +  ++L+F + ++P+MS+GKG   + + S +     D + + +       +T      + 
Sbjct: 652 QAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRKM 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
             RSE +L  +   RG  G+L+P+G 
Sbjct: 712 LLRSE-ELQKFRADRGRRGTLLPRGL 736


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E Q 
Sbjct: 359 RQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
             + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +  
Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +PE+S+GKG   V + + +     D + +      +    +    R   
Sbjct: 653 VGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 282/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+GL+  +  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y  G G  R RA +  
Sbjct: 195 IVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYETGNGSVRARATFTK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDES  A  VR+VL P+
Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L EWL  R   + RR 
Sbjct: 310 SNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF L+++Q + IL  +L
Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSDDQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L +LEE +I+ E D L  E+EKI  +L+S K +  ++   IR+  E+ + +   G  R
Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KTKLKKL---IRD--ELTADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +     +A +A  +  ++  EP+TVV+S +GWIR+ K H +D S L +++GD+L+ A+ 
Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVMSEKGWIRAAKGHDIDASTLSYRDGDALQGAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A +T ++  L ++G+AY+ P   L S RG+GE +            VT    +   + ++
Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSFVTLASAEPETRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            S+ G  F+     +I   + GK  L +S+   +    +V  V  D +  V  +  LL  
Sbjct: 604 ASTHGYGFVTRFENLIGRNKAGKAMLNLSAGSTVLTPSVVANVATDRIVAVTSSGNLLAI 663

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729
           + + +PE+ +GKG ++       ++    V    I  G T  + S  R+     N+L  +
Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723

Query: 730 LGKRGGVGSLVPKGF 744
           LG R   G L+P+G+
Sbjct: 724 LGARATRGHLLPRGW 738


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/746 (38%), Positives = 450/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P  S+E+LLE++ GPD+PT   I+  RE I + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWSKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA R
Sbjct: 299 TRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE++I+ E D L  E++++ +LL S ++    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    T   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G  D +  +  
Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L F +  +P++S+GKG   V + S +     D + +      +    +    R   
Sbjct: 653 AGRMLFFPVADLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSVTLHVGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+ +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGTSLPRGLQR 738


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/746 (38%), Positives = 444/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIHGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +PE+S+GKG   V + S +     D + +      +    +    R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/742 (37%), Positives = 446/742 (60%), Gaps = 24/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ AEL+L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+ +++ +L  + GPDFPT   I+  +E I + Y  GRG  ++R
Sbjct: 187 HNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRGSVKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRI
Sbjct: 247 AVWKKED-----GEIIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 302 VLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLSFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IAYLNIDE+I IIRNED+PKPV+++RF L++ Q +AI
Sbjct: 362 VTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPKPVLMARFELSDEQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E D L  E+ +++ +L+S ++    I  EI++  + ++    
Sbjct: 422 LNLRLRHLAKLEEHELQAEKDQLEQERAQLEQILSSERRLNTLIKKEIQQDAKTYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  MI  EP+TV++S  GW+R  K H +D   L++K GD  
Sbjct: 480 ---RRSPIVERAEA-KAISESEMIPAEPVTVILSEMGWVRCAKGHDIDPQGLNYKAGDKY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  ++   + + + G++Y L   +L S R  GE +   + L     +    + +  
Sbjct: 536 LAHACGKSSQPAVFIDSSGRSYALDPLSLPSARSQGEPLTGKLTLPAGASVDYLLIENEN 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K +   T   VA+    R
Sbjct: 596 QQLLMASDAGYGFICKFEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRS 722
            +LIF +  +P +S+GKG ++ +       +     V    I E  + +  +G R     
Sbjct: 656 -MLIFPVKDLPSLSKGKGNKIVTIPAASAKERTDLLVKLLLISENSSLVFHSGKRKITLK 714

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
             DL  +  +RG  G+ +P+G 
Sbjct: 715 PEDLQKYRAERGRKGTQLPRGL 736


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/752 (37%), Positives = 457/752 (60%), Gaps = 35/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q 
Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E  +L  E++++ +LL S ++  N I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQGDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L   ++ S RG GE +   +       I    + 
Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPISMPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
                LL+ S  G  F+   ++++A  R GK  + +    K    +++ G+    +A+  
Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719
             R +L+F +  +P++S+GKG ++ S     IS     +  + LTW+       S    +
Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFSEGKDRLTWLYLLPPQASVTLYF 706

Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746
            + +     N+L  + G+RG  G+L+ +G  R
Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737


>gi|332968503|gb|EGK07566.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Psychrobacter sp.
           1501(2011)]
          Length = 766

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 289/763 (37%), Positives = 456/763 (59%), Gaps = 31/763 (4%)

Query: 3   VDNISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           + NI  S T++  E +   S+    E+ YL YA+  I +RA+P + DG KPV RRII+AM
Sbjct: 4   ISNIPPSATVIPTEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAM 63

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ 
Sbjct: 64  SELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLITGQGNWGSP 123

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTEA+M+  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT
Sbjct: 124 DDPKSFAAMRYTEAKMSAYANTLLAELAQGTVDWQDNFDGSMQEPVTLPARLPNILLNGT 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ + 
Sbjct: 184 TGIAVGMATDIPPHNLNEVVRAAVRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQ 243

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  GRG +++RA + V++  +    +++  +PYQV  +++ E+IA+L+I K++P + D
Sbjct: 244 AMYESGRGSYKMRAVYHVDKQEKN--LVIIDALPYQVSGNKIQEQIAKLMIEKKLPWVVD 301

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I DES  +   RIVL  ++  +D D +M  +F  +D+ET + +NMN++ +   PQV  L 
Sbjct: 302 IHDESDHENACRIVLELRSTRVDVDRVMSHLFASTDLETSYRVNMNMIGLNGKPQVKNLK 361

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL+EWL  RR+V+ RR  FR+  ID+R+ IL GLLIAYL+IDE+I IIR ED PK  ++
Sbjct: 362 EILEEWLVSRRQVVTRRLLFRLDKIDKRLHILAGLLIAYLHIDEVIRIIREEDDPKTELM 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +R+ L+E Q +AIL++RLR L +L+E ++++E D L AE+  I  LL++ +   N +   
Sbjct: 422 NRYDLSEVQANAILDIRLRQLARLQEIELRTEKDELEAERAIIQELLDNPESLTNLM--- 478

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHS 537
              ++E+ +   + G  R +   V R +   L+++ ++  EPIT ++S  GWIR+ K H 
Sbjct: 479 ---IEELEADMKEHGNNRVSPV-VERNEATALKESDLVPSEPITAILSKAGWIRAAKGHD 534

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD + + ++ GDS +  + + + ++I ++ + G++Y + A  L S RG G+ +  ++   
Sbjct: 535 VDAAGMSYRSGDSYQAHIRSKSNEKIYIMDSTGRSYNIDAHTLASARGQGDPLTSVLKPA 594

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
                      +   ++++ SS+G  FI     +  N + GK  +    + K+  V  + 
Sbjct: 595 SGASFEQLLAGEDEQRIILASSQGYGFINTLGNLETNQKAGKNVINFDQDAKLLKVAYID 654

Query: 657 --------TG------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVI 701
                   TG      D +AVV     LLIF ID++PE  RGKG +L + KDG  +  V 
Sbjct: 655 AKPISDEDTGSEAQAQDQIAVVTSAGYLLIFDIDELPEQQRGKGNKLINLKDGEQVIAVT 714

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                + LT + +  R       DL  + GKRG  G  +P+GF
Sbjct: 715 PIHHSDSLT-VTAGKRHVTLKPMDLANYTGKRGNRGGQLPRGF 756


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/746 (38%), Positives = 444/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/749 (37%), Positives = 452/749 (60%), Gaps = 23/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GLD  A  KK
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ AE++L  + +   D+   ++    EP V P++ PNLL NGT+GIAVGMAT +P 
Sbjct: 130 ARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++ +L E+I GPDFPT   IV  R  +++ Y  GRG  R+R
Sbjct: 190 HNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYESGRGTLRMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +   RI
Sbjct: 250 ALYRVED-----GDVVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+ET + +N+N++ +   PQV  L  +L EWL  R   
Sbjct: 305 VIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLSEWLEFRVRT 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  FR+  ++RR+ +L+GLLIA+LN+DE+I IIR+ED+PKPV++ RF+L+E Q D I
Sbjct: 365 VRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPVLIERFALSEAQADYI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ RLR L +LEE +I+ E + L  E++K+  LL S  +    +  E+    E +  +  
Sbjct: 425 LDTRLRQLARLEEMKIRGEQEALAKERDKLLGLLGSEARLKKLVRKELLADAETYGDA-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A +A  +  ++  EP+TVV+S +GW+R  K H +D +AL +K GD+ 
Sbjct: 483 ---RRSPIVERAEA-RALSETELLPTEPVTVVLSEKGWVRCAKGHDIDPAALSYKSGDTF 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K A    +    + + + G++Y+L A +L S RG GE +   +            + D  
Sbjct: 539 KAAAQGRSNQYAVFIDSSGRSYSLAAHSLPSARGQGEPLTGRLAPPPGAGFECVLLPDDE 598

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              ++ S  G  F+ +  ++ A  + GK  L + +  ++   + +     D +A V    
Sbjct: 599 ALYVLASDAGYGFVAKGEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSDWLAAVTSEG 658

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVIC--FKICEGLTWIDSAG-RSYNRS 722
           +LL+F + ++P++++GKG R+ +     ++   + +C    + E  T    AG R+ +  
Sbjct: 659 RLLLFRVAELPQLAKGKGNRIIAIPGARVASREEYLCDFVVLSERATLQLQAGKRTLSLK 718

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             DL  + G+RGG G+ +P+GF R    L
Sbjct: 719 PADLEHYRGERGGRGNKLPRGFQRVDALL 747


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 288/754 (38%), Positives = 441/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     E ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MPDTAIYTAEGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   
Sbjct: 61  LSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  AEL+L   D+  +D++  ++    EP + P++ PNLL NG +GIA
Sbjct: 121 SFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP+HN++E+  A + L+++P+ ++E L+  I  PDFPT   IV   + I++ YR
Sbjct: 181 VGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEILKLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RAR+  E+       IV+T +PYQV  SR++E+IA    AK++P++ED RDE
Sbjct: 241 TGNGSLRQRARYTREQ-----GDIVITALPYQVSGSRVLEQIAAQFNAKKLPMIEDFRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++++   P+VM L  IL 
Sbjct: 296 SDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDLREILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R E + RR   R++ +  R+ +L GLLIA+LN+DE+I I+R ED+P+PV++ RF 
Sbjct: 356 EWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEPRPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D +LN RLR L +LEE +I++E   L AE++ +  LL   +     +  EI   
Sbjct: 416 LTEPQADYVLNTRLRQLARLEEMKIRAEQAELAAERDGLQRLLGDERALKGLVRDEIAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +  +     RR+   E  RA  A + +  +   EP+TVV+S +GW+R+ K H VD +
Sbjct: 476 AERYGDA-----RRSPLVE--RAAAAAIDETELTPSEPLTVVLSEKGWVRAAKGHEVDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L ++ GD+        +    + L + G++Y LPA    S RG GE +   +D      
Sbjct: 529 TLSYRAGDAFLSLARLRSNQTAVFLDSTGRSYALPAHTFPSARGQGEPLTGRLDPPPGAR 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---G 658
            VT    ++  + L+ S  G  FIV   E+IA  + GK  L +    ++   V++    G
Sbjct: 589 FVTVLGDNAETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEG 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-I 712
             VA V     LL+F + ++PEM+RGKG ++     G     G   +    + EG    +
Sbjct: 649 SSVAAVTTAGHLLLFPLAELPEMARGKGNKIIGIPAGRAGAEGERLIAVAVVGEGANLTV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            S  R       DL  + G+RG  G L+P+GF R
Sbjct: 709 LSGKRELTLKPADLALYRGERGRRGKLLPRGFQR 742


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/755 (38%), Positives = 452/755 (59%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +VVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVED-----GDVVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGDD-----RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLPAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 708 LQAGKRTLSLKGDDLEHYKGERGRRGSKLPRGFQR 742


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 294/743 (39%), Positives = 442/743 (59%), Gaps = 23/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N + + LR   E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   +  KKS
Sbjct: 6   NYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA
Sbjct: 66  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A+ +L  +D   VD+   ++    EP + P++ PNLL NG +GIAVGMAT IP H
Sbjct: 126 RLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA + LID PE ++E+L   I GPDFP    ++  RE +++ Y+ G G  R+RA
Sbjct: 186 NLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
           R+ +E+       IVVT +PYQV  ++L+E+IA  + AK++PL+ED+RDES  +   R+V
Sbjct: 246 RYELED-----GNIVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + PK+R ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  IL EWL+ R E +
Sbjct: 301 IMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSFRTETV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R+  +  R+ IL+GLL+A+L+IDE+IAIIR ED+PKPV+++RF LT+ Q +AIL
Sbjct: 361 RRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPVLMTRFGLTDLQAEAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRLR L +LEE +I+ E + L  E+ +++  L S  +    I  E+R+  E F  +   
Sbjct: 421 ELRLRHLARLEEIKIRGEQEALEQERARLERTLGSRAELDALIKQELRQDAEKFGDA--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+      +A +A    A+I  EP+TVV+S +GWIRS K H VD + L ++ GD   
Sbjct: 478 --RRSPIV-ARQASQALDTTALIASEPVTVVLSEKGWIRSAKGHEVDPATLSYRAGDGFL 534

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A    +T     L + G++Y+L   +L S RG GE +   ++       V         
Sbjct: 535 CAALGRSTQPAYFLDSTGRSYSLAVHDLPSARGQGEPLTGRLNPPPGAIFVAVLAGSEED 594

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRK 669
             L+ +  G  F+V+  E+ +  R GKT L V    K+   ++V    GD +A V    +
Sbjct: 595 WYLLATDGGYGFLVQLGELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGR 654

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRSE 723
           LL++  ++IP +++GKG +L       +       V    +  G     +AG R+     
Sbjct: 655 LLVYPAEEIPRLNKGKGSKLIQIPPADLEARQDYLVAMAALPAGAALRATAGKRTLTLQP 714

Query: 724 NDLLGWLGKRGGVGSLVPKGFPR 746
            DL  + G RG  G+ +P+GF R
Sbjct: 715 ADLDHYRGSRGRRGNPLPRGFQR 737


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/724 (38%), Positives = 439/724 (60%), Gaps = 23/724 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ ++++L+ V +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSDVLLREVSQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP V P++ PNLL NGT+GIAVGMAT +P HN+ E+  A + L++NP   
Sbjct: 121 WVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSD 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ L+ ++ GPD+PTGG I   R  I + Y  G+G  + RAR+ +EE       IV+ E+
Sbjct: 181 LDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEE-----GDIVIKEL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+    S+++E+IA  + AK++P++ D+RDES  +   R+VL PK+  +D + +M  +F 
Sbjct: 236 PHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMNV+ +  +P V  L   L EWL  R +V+ +R  FR+  +  R+ IL+
Sbjct: 296 STDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNE+KPK  ++ RF LT+ Q +AIL L+LR L KLEE +IK E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEEKPKVELMLRFGLTDIQAEAILELKLRHLAKLEEMRIKGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++++LL S ++    I+ EI+E  +          RRT   E  +  +A  +
Sbjct: 416 DELEKERKQLEALLGSDRKLKKLISEEIQEAVDAHGDE-----RRTPIVE-RKESQAFSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + ++  +P+TVVIS +GWIRS K H VD  AL++K GD   I+    +   ++LL+++G+
Sbjct: 470 EDLLSNDPVTVVISKQGWIRSAKGHDVDPLALNYKSGDEFSISCKGRSNQTLVLLASNGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y++ A  L S RG GE I   I L  +  IV A +       L+ S  G  FI +  ++
Sbjct: 530 SYSIKAHTLPSARGQGEPITGRISLEKDVTIVAAMLNADNTFYLIASDAGYGFIAKLGDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSRGKGVR 688
            A  + GK  L + +  K+   + V+     H+ V     ++L F  D +P+M++GKG +
Sbjct: 590 HAKNKAGKATLTLPTSAKVLTPISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNK 649

Query: 689 LQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           + S +    +        +   + + L    S  R  + ++ DL  +LG+RG  G  +P+
Sbjct: 650 MISIQASRAASHEEYVVAMASVLADDLLQAHSGKRFMSFTQKDLNEYLGERGRRGLKLPR 709

Query: 743 GFPR 746
           GF R
Sbjct: 710 GFQR 713


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 287/752 (38%), Positives = 449/752 (59%), Gaps = 34/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  A +ALID P   +E+LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAIWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA R
Sbjct: 299 TRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE++I+ E D L  E++ + +LL S ++    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    T   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSYRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
               KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD    +++  
Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSITA 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDS 714
             R +L+F +  +P++S+GKG ++ S     I         + LTW           +  
Sbjct: 653 AGR-MLLFPVADLPQLSKGKGNKIVS-----IPAAQAASGEDKLTWLFVLPPQTSVTLHV 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             R       DL  +  +RG  G+ +P+G  R
Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGTSLPRGLQR 738


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+D+P+ SI  L E++ GPD+P+   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYATGHGSVRARATYEK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IVVT +PYQV  S++IE+IA+ + AK++P LEDIRDES  A  VR+VL P+
Sbjct: 255 ENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F  +D+E  + +N+NV+ +   PQV  L  +L+EWL  R + + RR 
Sbjct: 310 SNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNLKTLLEEWLRFRSDTVVRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R++ ++RR+ +L+GLL+A+LN+DE+I IIR+ED+PKP +++RF+L+E Q D IL  RL
Sbjct: 370 NHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPALIARFALSEEQTDYILETRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E D L  E+E++ ++L S K +  ++  +     E+ + +   G  R
Sbjct: 430 RQLARLEEMKIRGEQDALAKEREQLQAVLAS-KTKLKKLIKD-----ELIADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +      A +A  +  ++  EP+T+V+S +GWIR+ KSH VD + L +++GDSL  A+ 
Sbjct: 484 RSPLVQREAAQAIDETELVPSEPMTIVMSEKGWIRAAKSHDVDPAGLAYRDGDSLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +T ++  L ++G+AY+  A  L S RG+GE +                  ++  ++++
Sbjct: 544 GRSTQQVAFLDSEGRAYSTLAHTLPSARGNGEPLTGRFSPAAGAAFQALATGENDTRVVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            SS G  FI     + +  + GK  L ++   K+     V     D +  V     LL F
Sbjct: 604 ASSHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVGNADTDRIVAVTSAGHLLAF 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLTWIDSAG-RSYNRSENDLLGW 729
            +  +PE+ +GKG   + +   K G    V    +  G T +  +G R+ + S  DL  +
Sbjct: 664 PVADLPELDKGKGNKIIDIPKAKLGTERVVAIAAVTPGNTLLVKSGQRTMSLSFKDLDAY 723

Query: 730 LGKRGGVGSLVPKGF 744
           LG R   G L+P+G+
Sbjct: 724 LGARASRGGLLPRGW 738


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/696 (40%), Positives = 417/696 (59%), Gaps = 34/696 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ L+  A  +KSA 
Sbjct: 18  ESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYAMNELSLNSAAKPRKSAA 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T
Sbjct: 78  VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLT 137

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +++L+L  +D   V+F+  Y+    EP + P++ P LL NG SGIAVGMAT IPSHN+ 
Sbjct: 138 PISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGASGIAVGMATEIPSHNLT 197

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+A+I NP+IS  +L+E I GPDFP GG I+  + +I E Y+ GRG  +VRARW 
Sbjct: 198 EVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIAEMYQSGRGSLKVRARWK 257

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299
           +E++ RG W  V+TE+P  V   R++E+I EL      + K+             + LL+
Sbjct: 258 IEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKSLTPEQQAQKAAILGLLD 317

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES  D  VR+V  PK+++ D    M ++   + +ET   LN+ ++     P+   L
Sbjct: 318 AVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSASLNLVMIGGDGRPRQKNL 377

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW++ R E + RR+ FRMQ ++ R+ IL+G     LNID++I IIR  D+PKP +
Sbjct: 378 TDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNIDKVIRIIRESDEPKPAL 437

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK  +  LL+      N  + 
Sbjct: 438 IEAFRLSDRQAEDILEIRLRQLARLEAIKIQQELAELRNEKSTLQDLLD------NPSSM 491

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI   +   G  R T  E   A++AT +Q +I+ EP+TV+IS +GW+R+   H 
Sbjct: 492 KKLVIKEIEGDAKTYGDARRTIIE--EAERATFEQKVID-EPVTVIISQKGWVRARTGHG 548

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D +   FK GDSL  A    T D +L   ++G+ YT+    L + RG G  +  L++L 
Sbjct: 549 HDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALPNARGDGVPVTTLLELA 608

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---V 654
               I+  F   +   LL+ S     FI + S++    + GK+F  +  E  + L    V
Sbjct: 609 SGSSILHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTL-DEGALPLAPTPV 667

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                 VA V  N +LL+F +D++  +S  G+GV L
Sbjct: 668 PTDASAVACVSGNGRLLVFGLDEMKTLSSGGRGVNL 703


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/746 (38%), Positives = 445/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E Q 
Sbjct: 359 RQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +  S L +K G
Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIAPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
             + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +  
Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +PE+S+GKG   V + + +     D + +      +    +    R   
Sbjct: 653 VGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/746 (37%), Positives = 446/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
             + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +  
Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 446/745 (59%), Gaps = 24/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP++ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+  AA+AL+ NP  ++E+LLE++ GPDFPT   I+  ++ + + Y  GRG  
Sbjct: 184 IPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W VE+        V++ +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWTVED-----GEAVISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D   +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +FR++ + RR+ IL GLL+AYLN+DE+I IIR +D+PK V++ RF L+E Q 
Sbjct: 359 RDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEPKQVLMQRFELSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           DAIL L+LR L KLEE +++ E D L  E++KI ++L S ++  N +  EI      +  
Sbjct: 419 DAILELKLRHLAKLEEMKLRGEQDELEKERDKIQAILASERKLSNLLKKEIEADDAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +     RR+   E   A KA  +  ++  EP+TV++S  GW+RS K H +D S L ++ G
Sbjct: 479 A-----RRSPLIERGEA-KALSENELMPSEPVTVILSTMGWVRSAKGHDIDPSGLGYRSG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+   ++   +   ++ + + G++Y L    L S RG GE +   + L     +      
Sbjct: 533 DNYLSSVRGKSNQPVVFIDSTGRSYALEPACLPSARGQGEPLTGKLTLPPGAAVEQMLTG 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   S+++A  R GK  L +    K+   + + G  D +  + E
Sbjct: 593 ADERKLLMASDAGYGFVCSFSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLALTE 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-------ISDVICFKICEGLTWIDSAGRSY 719
             +LL+F +D +P++S+GKG ++ S            ++ +        +T+     +  
Sbjct: 653 AGRLLMFPVDDLPQLSKGKGNKIISIPSADAAAGKDRLAGLYLLSTKASVTFYVGKRKLT 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
            R E DL  +  +RG  G+L+P+G 
Sbjct: 713 LRPE-DLQKFSAERGRKGTLLPRGL 736


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/746 (36%), Positives = 452/746 (60%), Gaps = 26/746 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   +  KK
Sbjct: 9   EGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELGLSALSKHKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 69  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +EL+L  +++  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 129 ARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + L++ P+ +I  LLE++ GPD+PT   I+  R  I + Y  G+G  + R
Sbjct: 189 HNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYESGKGSIKAR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + +E+       IV+T +P+Q   +++IE+IA  + AK++P++ D+RDES  +   R+
Sbjct: 249 AVYHMED-----GDIVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDESDHENPTRL 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +N+N+L M   PQV  L  IL EWLA RRE 
Sbjct: 304 VIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILTEWLAFRRET 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  FR+  +  R+ IL GLLIAYLNIDE+IAIIRNED+PK  ++ RF L+E Q DAI
Sbjct: 364 VRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEPKKELMRRFGLSEIQADAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+L+LR L KLEE++I+ E D L  E++++++LL S ++  N +  EI+   E +     
Sbjct: 424 LDLKLRHLAKLEEFKIRGEQDELAKERDQLEALLGSARKLGNLLKKEIQADAEKYGDD-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A + T ++ +   E +TVV+S  GW+R+ K H VD+  L++K GD  
Sbjct: 482 ---RRSPLVERQEAKQLT-EKELTPSELVTVVVSEMGWVRAAKGHDVDVQGLNYKAGDGY 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            ++    +  + + ++  G+ Y+L A  L S RG GE +   +     +      + +  
Sbjct: 538 LVSAQGRSNQQTVFMTNLGRTYSLEAHTLPSARGQGEPLTGKLSFTAGEQTRYVLLGNED 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            + L+ S  G  F+ E +++I+  + GK  L +    ++   +L  K   D + +V  N 
Sbjct: 598 ERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDDALCLVISNE 657

Query: 669 -KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F ++ +P++ +GKG +L        + ++  ++ V   K  + +T + +  R   
Sbjct: 658 GRMLLFPLNTLPQLGKGKGNKLIGIPADKVASREEFVTHVAVVKADQAVT-LYAGKRKLT 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               D++ + G+RG  G+ +P+G  R
Sbjct: 717 LKPADMVLYHGERGRRGAKLPRGLQR 742


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/746 (36%), Positives = 445/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  +  +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LIHDGSERQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+ +A + LID P ++++ +LE++ GPD+PT   I+  RE I + YR GRG  
Sbjct: 184 IPPHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYRTGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V++ +P+Q   ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAIWKKED-----GEVVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA+R
Sbjct: 299 TRLVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNLLEILTEWLAYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++ RF ++E Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEPKPKLIERFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++ + +LL S ++    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +   I  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLQEREEA-KAMSEHDFIPSEPVTIVLSEGGWVRSAKGHDIDPTGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G  D +  + +
Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPENAKALPPIEINGADDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F ++ +P++S+GKG   V + S +     D + +      +    +    R   
Sbjct: 653 AGRMLMFPVNDLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSITVHVGKRKLV 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L  +  +RG  G+L+P+G  R
Sbjct: 713 MKPQELQKFRAERGRKGTLLPRGLQR 738


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/746 (37%), Positives = 441/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y  GRG  
Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 D-----RRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +PE+S+GKG   V + S +     D + +      +    +    R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 285/754 (37%), Positives = 449/754 (59%), Gaps = 26/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++++ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTSSIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G  D   
Sbjct: 61  LKSTAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ S+ +L E I GPDFPT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W +E        IVV+ +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGSLRMRAVWELEH-----GDIVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++     P V  LDGIL 
Sbjct: 296 SDHENPTRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSLDGILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RR+ + RR S+R++ ++RR+ IL+G L+AYLNIDE+I IIR E+ PK  ++ RF 
Sbjct: 356 QWLKFRRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQALMQRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR+L KLEE +I+ E D L  E+E ++  L S  +    I  E+  +
Sbjct: 416 ISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKEREWLEKTLGSDARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A +A  +  ++  +PITVV+S +GWIR+ K H +D + 
Sbjct: 476 AEKYGDD-----RRSPLASREEA-RAFSELELMTADPITVVLSEKGWIRAAKGHDMDPAT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660
               + D+  + L+ S  G  F+   +E+    R GK  L + +  K+   V +      
Sbjct: 590 DGLMMGDNEQRCLLASDAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLT-WI 712
           VA V    +LL+F +  +P +SRGKG ++ +       D           K  +GLT W 
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEYVVATAVLKDDDGLTVWA 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +  R+E D   + G+RG  G+ +P+GF R
Sbjct: 710 GKRHLTLKRAELD--HYRGERGRRGNKLPRGFQR 741


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 290/703 (41%), Positives = 425/703 (60%), Gaps = 32/703 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   K
Sbjct: 17  EGGDVLTLGHYAESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 77  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSH
Sbjct: 137 RLTPIAQLLLDEIDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  AA+ALI NP+++  +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRA
Sbjct: 197 NLREIAAAAVALIRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +E++ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 257 RWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLD 316

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK+RSLD    ++S+   + +E+  PLN+ ++     P  
Sbjct: 317 LLDAVRDESGKDAPVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQ 376

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  R+  L RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK
Sbjct: 377 KGLGTILGEWVRFRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPK 436

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++S F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+
Sbjct: 437 AALMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NE 490

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            A +   +KEI   +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK
Sbjct: 491 SAMKRLMIKEIEGDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALK 547

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +D ++  FK GD L  A    T D ++   + G+ +++P   L  GRG G  +  LI
Sbjct: 548 GHGLDPASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLI 607

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKL 652
           +L     ++  F  ++  +LL+ SS G  FI +  ++++  + GK F+ +   +E    +
Sbjct: 608 ELESGTHLMHYFAANAEQQLLLASSNGFGFIAKLGDMVSRVKAGKAFMTIDEGAEPLAPM 667

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            V      VA +    +LL+F +D++  +S  G+GV L + +D
Sbjct: 668 PVMPLATQVACLSGQGRLLVFGLDEMKTLSAGGRGVILMALED 710


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 274/739 (37%), Positives = 449/739 (60%), Gaps = 25/739 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L   +E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 8   LALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 68  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E
Sbjct: 128 YAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W  
Sbjct: 188 VAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTK 247

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   R+V+ P+
Sbjct: 248 ED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVPR 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR 
Sbjct: 303 SNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRRL 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+L
Sbjct: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELKL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        RR
Sbjct: 423 RHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----RR 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+ 
Sbjct: 478 SPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL+
Sbjct: 537 GKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLM 596

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F 
Sbjct: 597 ASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFP 656

Query: 675 IDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +D +P++S+GKG ++        +  D G++ +        LT I    R       +L 
Sbjct: 657 VDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQ 715

Query: 728 GWLGKRGGVGSLVPKGFPR 746
             +G+RG  G+L+ +G  R
Sbjct: 716 KVVGERGRRGTLM-RGLQR 733


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/740 (37%), Positives = 449/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 290/748 (38%), Positives = 454/748 (60%), Gaps = 26/748 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  I+ EWLA R
Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGLVEIITEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR+ED+PKPV++ RF ++E Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPVLMQRFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIK------KEIQAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           S   G  RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H +D S L +K 
Sbjct: 473 SLAYGDERRSPLTERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD+ + A    T   ++ + + G++Y L    L S RG GE +   +       I    +
Sbjct: 532 GDTFRAAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVIM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
                KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   ++   
Sbjct: 592 AADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSIT 651

Query: 668 R--KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRS 718
           +  ++L+F +  +P++S+GKG   V + S +     DV+ +         LT +    R 
Sbjct: 652 KAGRMLMFPVADLPQLSKGKGNKIVSIPSAQAASGEDVLSWLFVLPPQTSLT-LHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                 DL  +  +RG  G+L+P+G  R
Sbjct: 711 LTLRPEDLQKFRAERGRKGTLLPRGLQR 738


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/747 (37%), Positives = 446/747 (59%), Gaps = 24/747 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   + +
Sbjct: 7   TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIAVGMAT I
Sbjct: 127 TESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+  A + L+D P+ S+++L E+I GPDFPT   I+  R+ + + Y  GRG  R
Sbjct: 187 PPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYETGRGSLR 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RARW      R +  +V+T++P+QV  +R++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 247 MRARWI-----RENGEVVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL EWLA R+
Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILTEWLAFRK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR   R+  +  R+ +L+GLLIAYLNIDE+I IIR EDKPK  +++RF L+  Q +
Sbjct: 362 TTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKPKAELMARFGLSAEQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L AE++++ ++L S  +    I  E+ +  E F   
Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELSAERDELQAILGSEDRLRELIKTELEQDAETFGDD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A +A  +  ++  +P+TVV+S++GW+R+ K H +D + L +K GD
Sbjct: 482 -----RRSPIVEREEA-RAFSETDLVSNDPVTVVLSDKGWVRAAKGHDIDPAGLSYKSGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              +A       + + L + G+AY+L A +L S RG GE +   I+           + +
Sbjct: 536 RFALAAKGRNNQQAIFLDSTGRAYSLMAHSLPSARGQGEPLTGRINPPSGATFSGLLMGN 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD----HVAVVG 665
              K L+V+  G  F+   +++I+  R GK  + V    ++   V +       ++A + 
Sbjct: 596 PERKTLLVTDGGYGFVTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETASTLYLAAIS 655

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC--EGLTWIDSAGRSY 719
              ++L+F + ++PE+++GKG ++ S     + +    V+   +   E    + +  R  
Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFGEEDQLEVKAGKRKL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                DL  +LG+RG  G  +P+G  R
Sbjct: 716 GLRFGDLEHYLGERGRRGHKLPRGLQR 742


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/681 (39%), Positives = 425/681 (62%), Gaps = 17/681 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL 689
           ++L+F I  +P++S+GKG ++
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 276/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/749 (37%), Positives = 444/749 (59%), Gaps = 32/749 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNNAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P+ S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLMAILTEWLEFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + +R ++R+  + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F ++E Q 
Sbjct: 359 RDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E + L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQEELAKERDQLQALLASERKLNTLIKKEIQADALAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 E-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   S+++A  R GK  + +    K    +++ G  D +  +  
Sbjct: 593 PDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIHGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S     I         +GL W+       S    + 
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVS-----IPAAQAAAGEDGLAWLFVLPPQTSVTLYFG 707

Query: 721 RSE-----NDLLGWLGKRGGVGSLVPKGF 744
           + +      DL  +  +RG  GS +P+G 
Sbjct: 708 KRKLILRPEDLQKFRAERGRKGSPLPRGL 736


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/681 (39%), Positives = 425/681 (62%), Gaps = 17/681 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTDIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL 689
           ++L+F I  +P++S+GKG ++
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/743 (36%), Positives = 458/743 (61%), Gaps = 24/743 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A L++  +    VD++  ++    EPV+FPSK P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A + L++NP+  +  LL+ + GPDF     I+ S E + E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310
           +A W  ++       I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E VR
Sbjct: 244 QAFWQQDKN-----QIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+ 
Sbjct: 299 LVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LLAE+  I+ +L+S  +    I  E+ E+KE+F +  
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLAEQTDIEKILSSKTRLKTLIKNELLEIKEVFGE-- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R++   E+S A   + ++ ++  EP+TVV+S  GWIRS K H +D S+L ++  D+
Sbjct: 477 ---ERKSPIKELSGAKVFSEEETLV-TEPVTVVLSAAGWIRSAKGHDIDPSSLSYRGEDT 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP  +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFRRGKSNQVSVFLDSNGKAYSLPTHSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENR 668
             K +++++ G  +I E   +I+N + GK F+K+  + ++   +KV  DH  +A +    
Sbjct: 593 DDKFMIMNTAGYGYISEFKNMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF+ID++P + +GKG ++ +        K+  ++          L  I+S  R    
Sbjct: 653 RLLIFNIDELPVLGKGKGNKIINIPTAKFIAKEELMTHAQLLSEASSLR-IESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  ++  R   G+++P+G+
Sbjct: 712 KLKDLENYISTRAKRGNMLPQGY 734


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/753 (37%), Positives = 451/753 (59%), Gaps = 32/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E  + V+LR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+GL   + +
Sbjct: 7   TDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+ + A+++L  + +   D+   ++    EP + P++ P++L NGT+GIAVGMAT I
Sbjct: 127 TESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIAVGMATDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+  A + L+  P+ ++E+L EYI GPD+PT   I+  R+ +++ Y  GRG  R
Sbjct: 187 PPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYETGRGSLR 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RARW V E G     +V+T++P+QV  +R++E+IA+ + AK++P++ D+RDES  +   
Sbjct: 247 MRARW-VNEGGD----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDESDHENPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L EWL  RR
Sbjct: 302 RLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLTEWLTFRR 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  +R+  +  R+ +L+GLLIAYLN+DE+I IIR EDKPK  ++ RFSL+ +Q +
Sbjct: 362 ATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKPKAELMVRFSLSADQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++ + S+L S K+    I  E+++  E +   
Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELAIERDHLQSILGSEKKLRQLIKTELQQDAETYGDD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   + +A     ++  +P+TVV+S +GW+R+ K H +D   L +K GD
Sbjct: 482 -----RRSPIVERGES-RAFSNIDLVSNDPVTVVLSEKGWVRAAKGHDIDPLGLSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              +  H     +++ L + G+AY L A +L S RG GE +   I+           + D
Sbjct: 536 KFSLQAHGRNNQQVIFLDSTGRAYALMAHSLPSARGQGEPLSGHINPPPGAQFCGLLMGD 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGD------HV 661
           S  K+++V+  G  F     ++++  R GKT + V     +   ++V V         ++
Sbjct: 596 SQRKVVLVTDGGYGFATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRETLYL 655

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWID 713
           A V    ++L+F + ++PE+ +GKG         R+QS +D  +  V  F   + L  I 
Sbjct: 656 AAVSNEGRMLVFPLTELPELVKGKGNKLISIPSARVQS-RDEFVVAVAVFAHSDQLE-IH 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R  +   +DL  +LG+RG  G  +P+G  R
Sbjct: 714 AGKRKMSLQFSDLEHYLGERGRRGHKLPRGLQR 746


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 285/748 (38%), Positives = 442/748 (59%), Gaps = 26/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+GL   + +
Sbjct: 7   TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+ + A+++L  + +  VD+   ++    EP V P++ P++L NGT+GIAVGMAT I
Sbjct: 127 TESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+  A + L+D PE + + L E++ GPDFPT   I+  R+ I + Y  GRG  R
Sbjct: 187 PPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYETGRGSLR 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RARW  E     S  IVVT++P+QV  +R++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 247 MRARWINE-----SGEIVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L EWL+ RR
Sbjct: 302 RLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLTEWLSFRR 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR   R+  +  R+ IL+GLL+AYLNIDE+IAIIR EDKPK  ++SRF L+  Q +
Sbjct: 362 TTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKPKAELMSRFGLSGEQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E+    E +   
Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELSAERDELQSILGSEDRLRELIKDELLADAETYGDD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E  R  KA  +  ++  +P+TVV+S +GW+R+ K H ++   L +K GD
Sbjct: 482 -----RRSPIVE-RREAKAFSETELVSNDPVTVVLSEKGWVRAAKGHDIEPEGLSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           +  +A       + + L + G+AY+L A    S RG GE +   I+           + D
Sbjct: 536 AFAMAAKGRNNQQAVFLDSTGRAYSLVAHTFPSARGQGEPLSGRINPPSGATFSGLLMGD 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGD---HVAVVG 665
              ++L+V+  G  F+    ++I+  R GK  + V    K M  VV    D   ++  + 
Sbjct: 596 PARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKPLYLGAIS 655

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRS 718
              ++L+F + ++PE+++GKG ++ S     + +       V  F   + L  I +  R 
Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFAEDDQLE-IRAGKRK 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +DL  +LG+RG  G  +P+G  R
Sbjct: 715 MGLQFSDLEHYLGERGRRGHKLPRGLQR 742


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 272/681 (39%), Positives = 424/681 (62%), Gaps = 17/681 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT  Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTGIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL 689
           ++L+F I  +P++S+GKG ++
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 282/749 (37%), Positives = 458/749 (61%), Gaps = 23/749 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T  E+  + ++L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 4   QTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGLKAS 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 64  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 124 MRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  HN++E+ +A + L+DNP   ++++ E + GPD PT   I+ SR  + + Y  GRG
Sbjct: 184 TDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYETGRG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA +  E+       I++T +P+QV  ++++E+IA  +  K++P++ D+RDES  +
Sbjct: 244 SVRMRAVYTKEQ-----GEIIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDESDHE 298

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  IL EWL+
Sbjct: 299 NPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILVEWLS 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E++ +R + R+  +  R+ IL+GL++AYLNIDE+IAIIR+E+ PK  ++ RF LTE 
Sbjct: 359 WRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDPKAELIKRFGLTEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL+L+LR L KLEE++I+SE + L  E++K++ +L S  +    I  EI++  E +
Sbjct: 419 QADAILDLKLRHLAKLEEFKIQSEQNELEEERKKLEGILGSDAKMRKLIKKEIQDAAEEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E   A +A  ++ ++  +P+TVVIS +GWIR+ K H +D   L++K
Sbjct: 479 GDD-----RRSPIVEREEA-QAFSEKDLLSSDPVTVVISKQGWIRAAKGHEIDAVGLNYK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ K+A    T    +LL T G+++T+   NL S RG GE +   I L     I  A 
Sbjct: 533 SGDAFKLACKGRTNQPTILLDTTGRSFTIETHNLPSARGQGEPVTGRITLPKGSTIDAAV 592

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAV 663
                 K+L+ S  G  F+ + S++ + T+ GK  L +     +   +KV     D +A 
Sbjct: 593 AGKDADKILMASDAGYGFVAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAA 652

Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAGRS 718
           V    +LL+F + ++PE++RGKG   + + S +     +++     + +  T +  AG+ 
Sbjct: 653 VTNEGRLLVFPVSELPELARGKGNKIINIPSARAAAREELVVALATLSKDDTLMVHAGKQ 712

Query: 719 YNR-SENDLLGWLGKRGGVGSLVPKGFPR 746
           + R   +D+  + G+RG  G+ +P+G+ R
Sbjct: 713 HLRLKPSDIEHYRGERGRRGNKLPRGYQR 741


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/737 (37%), Positives = 441/737 (59%), Gaps = 29/737 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+GL      KKSAR VG+V+GK 
Sbjct: 26  EQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMSELGLKSTTKPKKSARTVGDVLGKY 85

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLISGQGN+G+ D   S AA RYTEA+M+  A  +L 
Sbjct: 86  HPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSPDDPKSFAAMRYTEAKMSAYANTLLA 145

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD++D ++    EPV  P++ PN+L NGT+GIAVGMAT IP HN+ E+  AA+ 
Sbjct: 146 ELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLNEVVRAAIR 205

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP++S+++L + I  PD PT   I+ S++ +   Y  GRG +++RA + V++  +  
Sbjct: 206 LLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQAMYETGRGSYKMRAVYHVDQQEKN- 264

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             +++  +PYQV  +++ E+IA+L++ K++P + DI DES  +   RIVL  ++  +D  
Sbjct: 265 -LVIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVDIHDESDHENACRIVLELRSTRVDVA 323

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +NMN++ +   PQV  L  +L+EWL  RR+V+ RR  FR+  I
Sbjct: 324 RVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNLKEVLEEWLISRRQVVTRRVQFRLDKI 383

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           D+R+ IL GLLIAYLNIDE+I IIR ED PK  ++ ++ L++ Q +AIL++RLR L +LE
Sbjct: 384 DKRLHILAGLLIAYLNIDEVIRIIREEDDPKQELMGKYDLSDIQANAILDIRLRQLARLE 443

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +++SE D L AE+  +  LL++  +   Q+  E     E+ +   + G  R +   V 
Sbjct: 444 EIELRSEKDALEAERATLQELLDN-PESLTQLMIE-----ELEADMKEHGNDRMSSV-VE 496

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           R +   L+++ ++  EPIT V+S  GWIR+ K H VD   + ++ GDS +  +H+ + ++
Sbjct: 497 REEATALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEK 556

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I ++ + G++Y++ A  L S RG G+ +  ++                  ++++ SS+G 
Sbjct: 557 IYIMDSTGRSYSIEAHTLASARGQGDPLTSVLKPPAGASFEQLLAGADDQRIILASSQGY 616

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--------------TGDHVAVVGENR 668
            FI     +  N + GK  +   ++ K+  V  +              T + +AVV    
Sbjct: 617 GFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKTDSETPDDAQALTQNQIAVVTSAG 676

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            LLIF +D++PE  RGKG +L + K G  +  VI     + LT I +  R       DL 
Sbjct: 677 YLLIFGVDELPEQQRGKGNKLINLKAGEEVLAVIALNSHDSLT-ITAGKRHVTLKPMDLA 735

Query: 728 GWLGKRGGVGSLVPKGF 744
            +  KRG  G  +P+GF
Sbjct: 736 NYTSKRGNRGGQLPRGF 752


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/761 (37%), Positives = 455/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E+I GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSVRMRAVYRVED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED+PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPVLMEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL S  +    +  EI E 
Sbjct: 416 LTEVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLGSEAKLKKLVRKEIIED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AEKYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+   K V  +  
Sbjct: 589 FECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLED 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    +  G + 
Sbjct: 649 DWLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPSGASL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+     +DL  + G+RG  G+ +P+GF R  + L
Sbjct: 707 VLQAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/746 (37%), Positives = 444/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ A+++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    +  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLLKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D + L++K G
Sbjct: 479 D-----RRSPLKERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   +++IA  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 PEHQKLLMASDAGYGFVCTFNDLIAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720
             ++L+F +  +PE+S+GKG ++ S        G   ++   +    T I      R   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAPDAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  GS +P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 281/695 (40%), Positives = 418/695 (60%), Gaps = 32/695 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM+E+GL+  A  +KSA 
Sbjct: 18  EALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPRKSAA 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T
Sbjct: 78  VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLT 137

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +++L+L  +D   VDF+  Y+    EP + PS+ P +L NG SGIAVGMAT IPSHN+ 
Sbjct: 138 PISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHNLH 197

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I + Y  GRG  +VRA W 
Sbjct: 198 EVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAISDIYSSGRGSVKVRATWK 257

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299
           +E++ RG W  VVTE+P+     +++E+I EL      + K+             + +L+
Sbjct: 258 IEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKSLSPEQLALKQTVLSMLD 317

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES  D  VR+V  PK+++ D       +   + +ET   +N+ ++     P+   L
Sbjct: 318 TVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVSINLVMIGGDGRPRQKSL 377

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+EW+  R   + RRS F++Q +D R+ IL+G     LNID++I IIR  D+PKP +
Sbjct: 378 GDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNIDKVIKIIRESDEPKPAL 437

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L+E Q D IL +RLR L +LE  +I+ EL  L  EK  +  LL+      N  + 
Sbjct: 438 MDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRNEKTTLQDLLD------NPSSM 491

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI +     G  R T  EV  A+KA+++  +I+ EP+TVVIS +GW+R+   H 
Sbjct: 492 KRLVIKEIEADEKQFGDARRTLIEV--AEKASVETKVID-EPVTVVISQKGWVRARTGHG 548

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D +   FK GD+L       T D +L+  ++G+ Y++P   L   RG G  I  L++L 
Sbjct: 549 HDAAQFTFKAGDTLYNTFECRTVDSLLVFGSNGRIYSVPVSALPGARGDGVPITTLVELA 608

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               I+  F   +   LL+ S+ G  F  +  ++++ TR GK+F+ +   ++      VT
Sbjct: 609 SGSRILHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVT 668

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                +A + E  +LL+F ID+I  ++  G+GV L
Sbjct: 669 AGASAIACLSEKGRLLVFGIDEIKSLTAGGRGVIL 703


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 448/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  +I  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+   A    +   ++ + + G++Y L    L S RG GE +   +       +    + 
Sbjct: 533 DAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
           D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   L ++   D +  +  
Sbjct: 593 DETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F + ++P++S+GKG   V + S +     D + + +    E    +    R   
Sbjct: 653 AGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+L+P+G  R
Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 448/746 (60%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  +I  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+   A    +   ++ + + G++Y L    L S RG GE +   +       +    + 
Sbjct: 533 DAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
           D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   L ++   D +  +  
Sbjct: 593 DETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F + ++P++S+GKG   V + S +     D + + +    E    +    R   
Sbjct: 653 AGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+L+P+G  R
Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/747 (37%), Positives = 448/747 (59%), Gaps = 24/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG
Sbjct: 182 TDIPPHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E     +  I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +
Sbjct: 242 SIKMRAVWKKE-----NGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +R+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ 
Sbjct: 357 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F
Sbjct: 417 QAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E + A KA  +  M   EPIT+++S  GW+R  K H ++  AL +K
Sbjct: 477 ASP-----RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +   ++ + + G++YTL   +L S R  GE +   + L     I    
Sbjct: 531 TGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVK-VTGDHVAV 663
           + +    LL+ S  G  FI +  ++++  + GK  + +     +   LV++  T   VA+
Sbjct: 591 IENENQSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVAL 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-R 717
              NR +L+F +  +PE+S+GKG ++         +     V  F I E  + +  AG R
Sbjct: 651 TSMNR-MLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  D+  +  +RG  GS +P+G 
Sbjct: 710 KVTLKPEDIRKFRAERGRKGSPLPRGL 736


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 296/766 (38%), Positives = 442/766 (57%), Gaps = 52/766 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+ +++ L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ LD  A  +
Sbjct: 15  DEHKESLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLDSEAKPR 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD AAA RYTE
Sbjct: 75  KSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFGSRDGDGAAAMRYTE 134

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +AEL+L+ +D+  V+F+D Y+    EP + P++ P  L NG SGIAVGMAT IPS
Sbjct: 135 ARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNGASGIAVGMATEIPS 194

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  AA+A+I NP IS  +L+E I GPDFP GG I+ +  +I E Y  GRG  +VR
Sbjct: 195 HNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTISEIYENGRGSVKVR 254

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKRIPL----- 297
           ARW +EE+ RG W  VV+E+P      +++E+I E+           + A+++ L     
Sbjct: 255 ARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKKALSAEQVALRQQFL 314

Query: 298 --LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             L+ IRDE++ D  VRIVL PK++  +PD  M+ +   + +E   P+N+ ++ +   P+
Sbjct: 315 GILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNAPVNLVMIGIDGRPR 374

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  I+ EW+  R   + RR+++R++ +D R+ IL+G     LNID +I IIR  D+P
Sbjct: 375 QKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLNIDAVIHIIRESDEP 434

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EK+ +  LL++      
Sbjct: 435 KAALIDAFQLSERQADDILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKR 494

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I      ++EI +     G  R T  E   A++AT +Q +++ EP+TV+IS  GW+R  
Sbjct: 495 LI------IREIEADRKKYGDARRTLIE--EAERATAEQKIVD-EPVTVIISQNGWVRQR 545

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H ++LSA+ FK GD+L  +    +TD +L  S+ G+ YT+P   L  GRG G  I   
Sbjct: 546 TGHGLNLSAITFKSGDNLFSSFECRSTDFLLAFSSTGRIYTIPVHQLPGGRGDGMPITTF 605

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--K 651
            ++  ++ IV   V      +L+    G  F  + S++++  R GK+F+ +   E +   
Sbjct: 606 AEIGIDETIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETLLPP 665

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-------GISDVICF 703
           LV+      + V+ E  + L+F   ++  +S  G GV L     G        + D  C 
Sbjct: 666 LVIPEASKSIGVLSEKGRFLLFDATELRVLSSGGHGVILMGLDKGEKIRATLPVDDNGCL 725

Query: 704 KICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLVPKGF 744
            IC          ++ NR E     N +  + GKR   G  V   F
Sbjct: 726 VIC--------MAKNDNRYEVRISGNQIETYTGKRARKGKPVETRF 763


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 283/751 (37%), Positives = 439/751 (58%), Gaps = 32/751 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y  GRG  
Sbjct: 184 IPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E + A KA     ++  EP+T+V+S  GW+RS K H +D   L +K G
Sbjct: 479 D-----RRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPGGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +  
Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDSA 715
             ++L+F +  +PE+S+GKG ++ S     I         + L W           +   
Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVS-----IPGAQAAAGEDRLAWLFVLPPQTSVTLHFG 707

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            R       DL  +  +RG  GS +P+G  R
Sbjct: 708 KRKLTLRPEDLQKFRAERGRKGSPLPRGLQR 738


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/746 (38%), Positives = 436/746 (58%), Gaps = 25/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E +V+ +SLR   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ L   A 
Sbjct: 7   VAEGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELALSANAK 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA R
Sbjct: 67  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+++ AE++L  + +  VD+   ++   +EPVV P++ P++L NG +GIAVGMAT 
Sbjct: 127 YTEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIAVGMATD 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+ EA   L+  PE +  +L+ ++ GPDFP+   I+     + + Y  GRG  
Sbjct: 187 IPPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYENGRGSV 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           +VRAR+  EE       +V+T +PYQV  ++++E+IA  + AK++P++ D+RDES   E 
Sbjct: 247 KVRARFVREE-----GNVVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHEEP 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E    +NMNV+ +   P+V+ L G+L EWL  R
Sbjct: 302 TRLVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLSEWLDFR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R  + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED+PKP ++  F L+E Q 
Sbjct: 362 RSTVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPALMEAFGLSERQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL LRLR L KLEE +I+ E D L  E++++  LL +     + I  E+R   E +  
Sbjct: 422 EAILELRLRHLAKLEEMKIRGEQDELEEERKRLKELLGNEAALTDLIERELRAAGEEYGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR    E   A +A  +  ++  +P+TVV+S +GWIRS K H +D + L +K G
Sbjct: 482 P-----RRAPIVEREEA-RALSEVELVGADPVTVVLSEKGWIRSAKGHDIDPAGLSYKAG 535

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D   +A    T   ++LL   G+AYTL A NL S R  GE +   +++     +    + 
Sbjct: 536 DRFALAARGKTNQPLVLLDDTGRAYTLTAHNLPSARSQGEPVTGRVNVAAGAHMAGVMLG 595

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVG 665
             T + L+ S  G  FI     +   ++ GK  L V     +    +V +  G  VA V 
Sbjct: 596 PPTTRYLLASDGGYGFIAPLEALTGKSKSGKGVLSVPKGCNVLAPLMVPEGEGISVAAVS 655

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRS 718
              +LL+F +DQ+PEM++GKG ++        + ++  + D+      + L  + +  R 
Sbjct: 656 NEGRLLVFPLDQLPEMAKGKGNKMIDIPGARAARREEFLRDLTLLGPGQALV-VQAGKRK 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DL  + G RG  GS +P+G 
Sbjct: 715 LTLKAGDLDYYRGDRGRRGSKLPRGL 740


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     
Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T 
Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     
Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T 
Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGGTL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/681 (39%), Positives = 424/681 (62%), Gaps = 17/681 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GRG  R+R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT  Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTGIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + F     
Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+ 
Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +  + + L +DG++Y+L +  L S RG GE I   +++     I    + +  
Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +  +    
Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL 689
           ++L+F I  +P++S+GKG ++
Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/743 (37%), Positives = 441/743 (59%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +KK
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKYKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTE
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T IP 
Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  + R
Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A +  EE       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   R+
Sbjct: 243 AVYEREE-----GDIVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R   
Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +AI
Sbjct: 358 VRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGVSDRQAEAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +     
Sbjct: 418 LELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGDD-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  +  ++  +PITVV+S +GW+R+ K H VD+  L +K GD  
Sbjct: 476 ---RRSPLVEREDA-KALDESDLLSADPITVVLSEKGWVRAAKGHEVDVEGLSYKAGDKY 531

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K      +   +  + + G+ Y+LPA  L S RG GE +   +        + A +    
Sbjct: 532 KACAKGKSNQSVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGKDK 591

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ +  G  F+V  ++++AN + GKT L V    ++   + +   T D +A+V    
Sbjct: 592 DAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSNEG 651

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF-------KICEGLTWIDSAGRSYNR 721
           +LL+F + ++PEM RGKG ++ S     ++D + F          + LT + +  R    
Sbjct: 652 RLLVFPVSELPEMVRGKGNKMMSIPGARVADRVEFVQDVQVVGPNDALT-LYAGKRHLTL 710

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             NDL  + G+RG  G+ +P+GF
Sbjct: 711 KANDLEHYYGERGRRGAKLPRGF 733


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/704 (39%), Positives = 418/704 (59%), Gaps = 33/704 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +  + ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM+++GL+  A  +K
Sbjct: 17  DGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFAMNQLGLNAAAKPRK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 77  SAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L  +D   VDF+  Y+    EP + P + P +L NG SGIAVGMAT IPSH
Sbjct: 137 RLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLNGASGIAVGMATEIPSH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +AA+ALI NP ++  +L+  I GPDFP+GG I+ S  ++ E Y  GRG  +VRA
Sbjct: 197 NLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAALSEMYANGRGSLKVRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
            W +EE+ RG W  VVTE+P+     +++E+I EL   K                   + 
Sbjct: 257 LWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGKKALSPDQLAQKQLMLS 316

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES  +  VR+V  PK+++ D       +   + +ET   +N+ ++     P+ 
Sbjct: 317 LLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETSASINLVMIGGDGRPRQ 376

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+A R + + RRS FR++ ++ R+ IL+G     LNIDE+I IIR  D+PK
Sbjct: 377 KGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILLNIDEVIRIIRESDEPK 436

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK  ++ LLN      N 
Sbjct: 437 PALMGAFKLSDRQAEDILEIRLRQLARLEAIKIQQELAGLRTEKSTLEELLN------NP 490

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            A +   +KEI +     G  R T  E   A++AT++Q +I+ EP+TVVIS +GW+R+  
Sbjct: 491 GAMKKLIIKEIDADEKRFGDARRTLIEA--AERATVEQKVID-EPVTVVISQKGWLRART 547

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H  D +   FK GD L       T D +L   ++G+ Y++   +L   RG G  I  L+
Sbjct: 548 GHGHDPAQFAFKAGDDLYRTFECRTLDSLLAFGSNGRIYSIAVSSLPGARGDGAPISALV 607

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMK 651
           +L     ++  F   +   +L+ S+ G  FI   +++I   + GK F+ + + +     +
Sbjct: 608 ELASGSTVLHYFAGSADSTMLLASTAGYGFIARAADMIGRNKAGKAFITLDAGDLPLPPQ 667

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
           +++        + GE R LL+F +D++  MS G+G+ L + +DG
Sbjct: 668 MLIPSASSVACLSGEGR-LLVFGLDELKTMSGGRGMILMALEDG 710


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/744 (37%), Positives = 445/744 (59%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG  ++R
Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKE-----NGDIVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLEYRRIT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  Q DAI
Sbjct: 362 VRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDD-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K GDS 
Sbjct: 480 ---RRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYKSGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L +DG++Y L + +L S R  GE I   ++L    ++    + +  
Sbjct: 536 LAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVMMAEDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ S  G  FI + S++++  + GK  L +    ++   + +  +  D +  +    
Sbjct: 596 QLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++ +GKG   + + + +     + + +   + +G      AG R  +  
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVTLHAGKRKLSLK 715

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  GS++P+G  R
Sbjct: 716 PSDLDNFRGERGRRGSILPRGLQR 739


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 288/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     
Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T 
Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 280/744 (37%), Positives = 445/744 (59%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG  ++R
Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKE-----NGDIVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLEYRRIT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  Q DAI
Sbjct: 362 VRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDD-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K GDS 
Sbjct: 480 ---RRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYKSGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L +DG++Y L + +L S R  GE I   ++L    ++    + +  
Sbjct: 536 LAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVMMAEDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ S  G  FI + S++++  + GK  L +    ++   + +  +  D +  +    
Sbjct: 596 QLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++ +GKG   + + + +     + + +   + +G      AG R  +  
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVTLHAGKRKLSLK 715

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  GS++P+G  R
Sbjct: 716 PSDLDNFRGERGRRGSILPRGLQR 739


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/751 (36%), Positives = 445/751 (59%), Gaps = 32/751 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  +  +L    EE YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTQDGAERRALHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RMRAVWKRED-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNLLEILSEWLIYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR   R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFEISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +++  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDLYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D   L +K G
Sbjct: 479 D-----RRSPLREREEA-KAISESELVPSEPVTIVLSQSGWVRSAKGHDIDPGGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       +    + 
Sbjct: 533 DSYRAAARGKSNQPVVFVDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGAVMEQVLME 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S+ G  F+   S++++  R GK  L +    K+   L +    D +  +  
Sbjct: 593 ADDQKLLMASNAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDLLLAITS 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDSA 715
             ++L+F +  +P++S+GKG ++ S     I         + L W           +   
Sbjct: 653 AGRMLLFPVGDLPQLSKGKGNKIIS-----IPSAQAASGEDNLAWLLLLTPQTSVTLHVG 707

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            R      +DL  +  +RG  G+L+P+G  R
Sbjct: 708 KRKLTLKPDDLQKFRAERGRRGTLLPRGLQR 738


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/745 (36%), Positives = 452/745 (60%), Gaps = 22/745 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   ITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A + L+D P+ S++ L+E++ GPD+PT   I+ S E I + Y+ GRG  
Sbjct: 184 IPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWSKED-----GNVVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV++SRF L+E Q 
Sbjct: 359 RETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPVLMSRFGLSETQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E   L  E++K+ ++L+S +++ N +       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQSELAKERDKLQAILSS-ERKLNTLLK-----KEIMAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +   G  RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D + L++K 
Sbjct: 473 AATYGDERRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + +     +    +
Sbjct: 532 GDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTVPAGATVEHVLM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVV 664
                + L+VS  G  FI   S+++A  R GK  + +    ++   +++     D +  +
Sbjct: 592 APDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLAI 651

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYNR 721
               ++L+F +  +P++S+GKG ++ S +    +D++ + +    +    +    R    
Sbjct: 652 TRAGRMLMFPVADLPQLSKGKGNKIISVQSAAENDLLSWLLILPPQSSITLYFGKRKLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
              DL  + G+RG  G+ +P+G  R
Sbjct: 712 RPEDLQKFRGERGRKGTSLPRGLQR 736


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIKDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/753 (37%), Positives = 446/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A +A  +  ++  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGDD-----RRSPIVERAEA-RALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++   + +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
            +A V    +LL+F +  +P++ +GKG ++       ++      V    +  G T +  
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R+ +    DL  + G+RG  G+ +P+GF R
Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQR 742


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K+A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKVAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/693 (39%), Positives = 420/693 (60%), Gaps = 36/693 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+GL   A   KSAR+VG+VIGK 
Sbjct: 28  EGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVVGDVIGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+  + EP   P++ P LL NG SGIAVG+AT IPSHN++E+  A +A+
Sbjct: 148 IDQGTVDFMPNYDGVEEEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREVAAATVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP+I+  +L++++ GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W
Sbjct: 208 IRNPKIAHAELMQHLPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLGLLDAVRDESGKD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I YLNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL +RLR L +LE+ +I+ EL  L  EK K++ LL S      + A +   +KEI 
Sbjct: 448 QADDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEIE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +  +  +AT +  +I+ EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 502 ADAKQYGDERRTLIQQEK--RATYEARVID-EPVTVVVSQKGWVRALKGHGLDTAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++   +L  GRG G  +  LI+L     ++  +
Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGSHLMHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVA 662
              +   LL+ SS G  FI +  ++++  + GK+F+ + +       M L+   +   VA
Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPLLPDAS--QVA 676

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
            +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 677 CLSSTGRLLVFGIDEMKTLSGGGRGVTLMALDD 709


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/760 (36%), Positives = 453/760 (59%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E++ GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLLKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPVLMETFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL+S  +    +  EI E 
Sbjct: 416 LTDVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLSSEAKLKKLVRKEILED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AEKYGDD-----RRSPI--VARAEAKALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLTAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+   K V  +  
Sbjct: 589 FECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLED 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+        L  
Sbjct: 649 DWLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGSSLV- 707

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +  R+     +DL  + G+RG  G+ +P+GF R  + L
Sbjct: 708 LQAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/752 (36%), Positives = 445/752 (59%), Gaps = 33/752 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +A++D PE+S+++ +EYI GPD+PT   I+  ++ I + Y+ GRG  
Sbjct: 184 IPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +++T +P+QV  ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAIWSKEE-----GNVIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILSEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE +  R + R++ + +R+ IL GLL AYLNIDE+I +IRNED+PKPV++ RF LTE Q 
Sbjct: 359 RETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPVLMQRFGLTETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +A+L L+LR L KLEE +I+ E D L  E++K+ S+L S +++ N +       KEI + 
Sbjct: 419 EAVLELKLRHLAKLEEVKIRGEQDELSKERDKLQSILGS-ERKLNTLLK-----KEIIAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +   G  R +  +     KA     ++  EPITVV+S  GW+RS K H +D + L++K G
Sbjct: 473 AESYGDDRRSPLKERIEAKAMSDHDILPSEPITVVMSEMGWVRSAKGHEIDPAGLNYKSG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A+   +   ++ + T G++Y++   +L S RG GE +   + L     +    + 
Sbjct: 533 DSFRSAVRGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLALPAGALVEHLLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665
               K L+ S  G  FI   S++IA  R GK  + +    K+   +++  +    +  + 
Sbjct: 593 KEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDS 714
           +  ++L+F +  +P++S+GKG ++ S     I         + L+W           +  
Sbjct: 653 KAGRMLMFPVSDLPQLSKGKGNKIVS-----IPAAQAVSGEDTLSWLLVLSPQSTITLYF 707

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             R       DL  +  +RG  G+ +P+G  R
Sbjct: 708 GKRKLQLRPEDLQKFRAERGRKGTSLPRGLQR 739


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRIRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/753 (37%), Positives = 446/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A +A  +  ++  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGDD-----RRSPIVERAEA-RALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++   + +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
            +A V    +LL+F +  +P++ +GKG ++       ++      V    +  G T +  
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R+ +    DL  + G+RG  G+ +P+GF R
Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQR 742


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/750 (36%), Positives = 462/750 (61%), Gaps = 22/750 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +
Sbjct: 1   MKEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YP + GQGN+G+ D   S AA RY
Sbjct: 61  KKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++T+ A L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I
Sbjct: 121 TESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ EI +A + LIDNP+  +  LL+ I GPDF     I+ S++ + E Y  G+GGF+
Sbjct: 181 PSHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDV 309
            +A+W  ++       I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E V
Sbjct: 241 AQAQWAQDKN-----QIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPV 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+
Sbjct: 296 RLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRK 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +++ F L++ Q +
Sbjct: 356 ETVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIITAFKLSDIQAN 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L KLE+ +++ E D L+AE+  I+ +L+S  +    I  E+ E+K+ F + 
Sbjct: 416 AILEIRLRQLAKLEQIKLEQERDTLVAEQTDIEKILSSKTRLKTLIKNELIEIKDEFGEV 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                R +   E + A   + ++ ++  EPITVV+S  GWIRS K H +D S+L ++  D
Sbjct: 476 -----RXSPIREATEAKVFSEEETLV-TEPITVVLSAAGWIRSAKGHEIDPSSLSYRGED 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L+      +    + L ++GKAY+L + +L S RG G+ I   +  +     +++ + +
Sbjct: 530 VLQDYGRGKSNQVSVFLDSNGKAYSLASHSLPSARGMGDPITGRVSADSGVKFISSLIGN 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGEN 667
              K +++++ G  +I E   +++N + GK F+K+  E  +   +KV  DH  +A V   
Sbjct: 590 DEDKFMIMNTAGYGYISEFKNMVSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNI 649

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFK--ICEGLTW-IDSAGRSYNR 721
            +LLIF ID++P + +GKG   + + + K     +++     + E  +  I+S  R    
Sbjct: 650 GRLLIFKIDELPTLGKGKGNKIINIPTAKFIAKEELMTHAQLVSEASSLRIESGKRFLTL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +  K +
Sbjct: 710 KLKDLENYISTRAKRGNMLPQGYRKVDKMI 739


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 286/754 (37%), Positives = 457/754 (60%), Gaps = 31/754 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ ++ VSL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A FK
Sbjct: 9   EDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKATAKFK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYT
Sbjct: 69  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSPDDPKSFAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+T  A+++L  + +  VD+   ++    EP V P++ PN+L NGT+GIAVGMAT +P
Sbjct: 129 ESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGTTGIAVGMATDVP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+  RE I+  Y  GRG  ++
Sbjct: 189 PHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIMAMYETGRGALKM 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA W  E        IVV+ +P+QV  S+++E+IA  + AK++P++ D+RDES  +   R
Sbjct: 249 RAVWEKE-----GPDIVVSALPHQVSGSKVLEQIAHQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+ P++  ++ + +M  +F  +D+E  + +N+N++ +   P V  LD ILKEWL  R E
Sbjct: 304 LVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGLDRILKEWLKFRTE 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  +R++ + RR+ IL G L+A+LNIDE+I IIR EDKPKP ++ RF +++ Q +A
Sbjct: 364 TVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPALMKRFGISDVQAEA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+L+LR+L KLEE +I+ E D L  E++++ ++L S  +    I  E++ V E F    
Sbjct: 424 ILDLKLRNLAKLEEMKIRGEQDELEVERDQLQTILGSAARLKTLIKKELQSVAEKFGDD- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RR+       A +A  +  ++  +PITVV+S +GWIR+ K H +D S+L +K GD 
Sbjct: 483 ----RRSPLMARGEA-QAFSELDLMTADPITVVMSEKGWIRAAKGHDIDPSSLSYKSGDG 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            K+A    +    ++L + G+AYT+P+ NL S RG GE +   I+           + D 
Sbjct: 538 FKMAAKGRSNQPTVILDSTGRAYTVPSHNLPSARGQGEPVTGRINPPSGATFEGLMMGDE 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGDHVAVVGEN 667
               L+ S  G  F+ +  E+    + GK  L   K S   +   + +  G  VA V   
Sbjct: 598 GDLYLLASDAGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGAWVAAVTNE 657

Query: 668 RKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKI-CEGLTWIDSAGRS 718
            +LL+F ++ +P+M+RGKG         R+QS ++     VI  ++  +  T +  AG+ 
Sbjct: 658 GRLLVFPLEDLPQMARGKGNKIIGIPTARVQSREEF----VIAVQVLTDKDTLVVYAGKR 713

Query: 719 YNRSE-NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +++ + +DL  + G+RG  G+ +P+GF +    L
Sbjct: 714 HHKLKFSDLKHYCGERGRRGNKLPRGFQKVDAML 747


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/747 (36%), Positives = 451/747 (60%), Gaps = 25/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 8   LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 68  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  
Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +  
Sbjct: 248 RMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA R
Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q 
Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +  
Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K G
Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    + 
Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +
Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQ 656

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             ++L+F +D +P++S+GKG ++        +  D G++ +        LT I    R  
Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +L   +G+RG  G+L+ +G  R
Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/747 (37%), Positives = 449/747 (60%), Gaps = 25/747 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T++ ++++   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   +
Sbjct: 2   TIIVDDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALS 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129
             KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY LI GQGN+G++D   S AA 
Sbjct: 62  KHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMDDPKSFAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A+++L  + +   D+   ++    EP + P++ PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+  A+L L+ +P +++++LLE I GPDFPTG  I+ S++ I + Y  G G 
Sbjct: 182 DIPPHNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            + RA +  E+       I++  +PYQV  ++++E+IA  + AK++P++ D+RDES  + 
Sbjct: 242 VKQRASYNKED-----GEIIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEH 296

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            VR+V+ P++  +D D LM  +F  +D+E    +NMN++ M   PQV  L  +L EWL +
Sbjct: 297 PVRLVIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGY 356

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R E + RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR+ED PK VM+ RFS+T+ Q
Sbjct: 357 RVETVRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAVMMERFSITDRQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            ++IL LRLR L KLEE +I+ E+D L  E+++++ LL+S  +    I  E+    E F 
Sbjct: 417 AESILELRLRHLAKLEEMKIRGEMDELSKERKQLELLLSSDTRLKTLIRKELTADAEKFG 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E  +A KA     ++  EP+T+V+S  GW+++ K H VD ++L+F+ 
Sbjct: 477 DD-----RRSQIVE-RKASKALDATELLPTEPLTIVLSESGWVKAAKGHDVDPTSLNFRT 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD    ++ A +  +I+ L   G++Y+L A  L S RG GE +   +        V+   
Sbjct: 531 GDRYLTSVKARSNQQIVFLDETGRSYSLSAHTLPSARGQGEPLSGRLQSAPEVRFVSVLA 590

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVV 664
            ++   +L+ ++ G  F+     ++A  + GK    +    ++    L+     D +AV 
Sbjct: 591 VEADKTILLTNTAGYGFVTTLENLLAKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVA 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRL----QSYKDGG---ISDVICFKICEGLTWIDSAGR 717
             + +LL+F+  +IP +++GKGVRL    Q+   GG   +  VI       LT + +  R
Sbjct: 651 SGDGRLLVFAASEIPTLNKGKGVRLINIPQARFTGGQEWMQSVIIVPQQRSLT-LHAGRR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  + G+RG  G  +P+G 
Sbjct: 710 HLTLKPADLEHYAGERGKRGHKLPRGL 736


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 450/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +  +R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPIRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPKLMSRFGITETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E + L  E++++ S+L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQSILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +    +   LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPLQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 450/740 (60%), Gaps = 25/740 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR
Sbjct: 9   ETISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLRNTAKYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYTE+R+
Sbjct: 69  TVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A L+L+ + +  VD+   ++    EP V P++ P++L NGT+GIAVGMAT IP HN+
Sbjct: 129 HKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A + LID P+ S+  L+ ++ GPDFPTG  ++  +E I + Y  GRG  R+R+++
Sbjct: 189 KELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYEGGRGTLRLRSKY 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             E        IV+TE+P+QV  S+++E+IA+ + AK++P++ D+RDES  +   R+V+ 
Sbjct: 249 IQE-----GTDIVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDESDHENPTRLVIE 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D D LM  +F  +D+E    +N+N++ +   PQV PL+ IL EWL  R E + R
Sbjct: 304 PRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILSEWLEFRTETVRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  +++RF L++ Q +AIL +
Sbjct: 364 RLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKPKEELMARFGLSDVQAEAILEI 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E D L  E+++++ +L S  +    I       KEI + +   G 
Sbjct: 424 KLRQLAKLEEIKIRGEQDELSKERDQLEKILGSKARMRTLIK------KEILADAETYGD 477

Query: 495 RRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            R T   VSRA+ +   +  ++  E +TVV+S RGWIRS K H ++   L++K GDS   
Sbjct: 478 DRRTLL-VSRAEASAFSETEILPSEAVTVVLSERGWIRSGKGHELEPEGLNYKSGDSFAF 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A    +    +LL + G++Y+L    L S RG GE I   ++      +    + +   +
Sbjct: 537 AARGKSNQATVLLDSTGRSYSLQTHTLPSARGQGEPITTRLNPPPGAAMKGLLLGNPDDQ 596

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKL 670
            L+ S  G  FI + S++++  + GK  L +    ++   + V +++ D++A +    +L
Sbjct: 597 YLLTSDAGYGFIGKLSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTDYLAAISNEGRL 656

Query: 671 LIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGL--TWIDSAG-RSYNRSEN 724
           L+F +  +PE+++GKG   + + S +     +++   +  G   T +  AG R      +
Sbjct: 657 LVFPVRDLPELAKGKGNKIINIPSSRAAAREELMVGAVVLGADDTLLVYAGKRKLKLRGS 716

Query: 725 DLLGWLGKRGGVGSLVPKGF 744
           DL  +LG+RG  G+ +P+GF
Sbjct: 717 DLEHYLGERGRRGNKLPRGF 736


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332280161|ref|ZP_08392574.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|332344976|gb|AEE58310.1| DNA topoisomerase IV, A subunit ParC [Escherichia coli UMNK88]
 gi|332752693|gb|EGJ83078.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-671]
 gi|332753078|gb|EGJ83462.1| DNA topoisomerase IV, A subunit [Shigella flexneri 4343-70]
 gi|332754396|gb|EGJ84762.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2747-71]
 gi|332765499|gb|EGJ95717.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2930-71]
 gi|332999773|gb|EGK19357.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-272]
 gi|333000251|gb|EGK19834.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-218]
 gi|333014825|gb|EGK34170.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-304]
 gi|333015641|gb|EGK34980.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-227]
          Length = 752

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/413 (59%), Positives = 315/413 (76%), Gaps = 3/413 (0%)

Query: 9   SNTLVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           S+T   ENV       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ 
Sbjct: 2   SDTPDPENVSPDLIEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELR 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+KSA+I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 62  LSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDN 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMT  AE +L G++EDAVDFR  Y+   +EPVV P+ FPNLLANG+SGIAV
Sbjct: 122 PAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSSGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A L LI  P+   E LL YI GPDFPTGG++VE RESI E+YR 
Sbjct: 182 GMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAETYRT 241

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+R RW  E++GRG W I+VTEIP+QVQKS+LIEK+AE+I  K++P+L D+RDES
Sbjct: 242 GRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVRDES 301

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIVL P+++++DPD+LM  ++  SD+ETRF LNMNVL  G  P+V  L  +L+ +L
Sbjct: 302 AEDIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 361

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            HRREVL RRS  RM  ID R+E+L+GL++A+L++D +I IIR +D PK  ++
Sbjct: 362 DHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAALM 414



 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/330 (48%), Positives = 223/330 (67%), Gaps = 3/330 (0%)

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q +AILN+RLRSLR+LEE ++ +E D L+AE+ +++ LL +G  QW +IA ++RE
Sbjct: 480 GLSDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLRE 539

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V+  F      G RRTTF E    ++  L+ AMIE+EP+T+V S  GWIR+L  H +DL+
Sbjct: 540 VRAQFGAKAPGGARRTTFAEAGEVEEVPLE-AMIEREPVTIVCSQMGWIRALTGH-IDLN 597

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L FK+GD  +   HA TTDR+LL  ++G+ YTL A NL  GRG GE ++L++DL +  
Sbjct: 598 RELKFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEA 657

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            IV  F++    +LLV SS G+ F+V E E++A TR GK  L V +  + ++   V+GDH
Sbjct: 658 RIVDLFIHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVRAPAQARICHPVSGDH 717

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           +AVVGENRK+L+F +DQ+PEM RGKGVRLQ YKDGG+SD   F + EGL+W D AGR+  
Sbjct: 718 LAVVGENRKVLVFPLDQLPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWRDPAGRTRT 777

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              ++L  W G R G G + P+GFPR  +F
Sbjct: 778 VGPDELAEWQGNRAGSGRMAPRGFPRDNRF 807


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/742 (37%), Positives = 444/742 (59%), Gaps = 24/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 128 SRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG  ++R
Sbjct: 188 HNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +  +R+
Sbjct: 248 AVWKKE-----NGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIRL 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR+ 
Sbjct: 303 VIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTFRRQT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ Q +AI
Sbjct: 363 VTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F+    
Sbjct: 423 LNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E + A KA  +  M   EPIT+++S  GW+R  K H ++  AL +K GD+ 
Sbjct: 481 ---RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYKTGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++YTL   +L S R  GE +   + L     I    + +  
Sbjct: 537 LTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLLIENEN 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVK-VTGDHVAVVGENR 668
             LL+ S  G  FI +  ++++  + GK  + +     +   LV++  T   VA+   NR
Sbjct: 597 QSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNR 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRS 722
            +L+F +  +PE+S+GKG ++         +     V  F I E  + +  AG R     
Sbjct: 657 -MLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRKVTLK 715

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
             D+  +  +RG  GS +P+G 
Sbjct: 716 PEDIQKFRAERGRKGSPLPRGL 737


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 4   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 64  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 124 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 184 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 244 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 299 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 419 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 474 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 533 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 592

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 652

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 653 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 711

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 712 QKVTGERGRRGTLM-RGLQR 730


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/745 (37%), Positives = 448/745 (60%), Gaps = 24/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A 
Sbjct: 4   LTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +  V+F+  ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ALID P+ ++E LL+ + GPD+PT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  EE G      V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RQRAVWKKEE-GEA----VITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPVLMSRFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++IL L+LR L KLEE +I++E  +L  E++++ + L S ++    +       KE+ + 
Sbjct: 419 ESILELKLRHLAKLEEVKIRAEQADLEKERDQLQATLASERKMNTLLK------KELQAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           S   G  R +        KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 473 SASYGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A    +   +  + + G++YTL   +L S RG GE +   +       +    + 
Sbjct: 533 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVLME 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               +LL+ S  G  FI   S++++  R GK  L +    ++   + V    D +  + +
Sbjct: 593 PDDQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719
             ++L+F + ++P+MS+GKG   + + S +     D + + +       +T      +  
Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRKML 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
            RSE +L  +   RG  G+L+P+G 
Sbjct: 713 LRSE-ELQKFRADRGRRGTLLPRGL 736


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVCRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV+K   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVAGERGRRGTLM-RGLQR 733


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL+ R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + ++EGD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYREGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L +DG+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/746 (36%), Positives = 450/746 (60%), Gaps = 24/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   ITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A + L+D P+ ++++L+E++ GPD+PT   I+ S E I + Y+ GRG  
Sbjct: 184 IPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWSKED-----GNVVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV+++RF L+E Q 
Sbjct: 359 RETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPVLMARFGLSETQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S +++ N +       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDKLQAILGS-ERKLNTLLK-----KEIIAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +   G  RR+   E   A KA  +  +   EP+T+V+S  GW+RS K H +D + L++K 
Sbjct: 473 AATYGDERRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + L     +    +
Sbjct: 532 GDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTLPAGATVEHVLM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVV 664
                K L+ S  G  FI   S+++A  R GK  + +     +   +++     D +  +
Sbjct: 592 ASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLAI 651

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWIDSAGRSYN 720
               ++L+F +  +P++S+GKG ++ S +    D  +S +        +T      +   
Sbjct: 652 TSTGRMLMFPVADLPQLSKGKGNKIISVQAASGDELLSGLFILPPQSSITLYFGKRKLTL 711

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
           R E DL  +  +RG  G+ +P+G  R
Sbjct: 712 RPE-DLQKFRAERGRKGTSLPRGLQR 736


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   S+++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFSDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/668 (38%), Positives = 423/668 (63%), Gaps = 16/668 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR VG+V+GK 
Sbjct: 15  EKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ A+++L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYADVLLG 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HNV+E+ +AA+A
Sbjct: 135 ELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDIPPHNVREVAQAAIA 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R+RA W  E+     
Sbjct: 195 LIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAVWTKED----- 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             +V+  +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D +
Sbjct: 250 GAVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDME 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR ++R++ +
Sbjct: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRRDTVRRRLNYRLEKV 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
            RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF+++E Q +AIL L+LR L KLE
Sbjct: 370 LRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFAISETQAEAILELKLRHLAKLE 429

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E ++L  E+++I ++L S ++  N +  E++   E F        RR+   E  
Sbjct: 430 EMKIRGEQNDLEKERDQIQAILASERKMNNLLKKELQADAEAFGDD-----RRSPLHERE 484

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            A KA  +  M+  EP+T+V+S   W+RS K H +D   L +K GDS K ++   +   +
Sbjct: 485 EA-KAMSEHDMLPSEPVTIVLSQMSWVRSAKGHDIDAKGLSYKAGDSWKASVKGKSNQPV 543

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + + + G++Y +    L S RG GE +   + L     +    +     KLL+ S  G  
Sbjct: 544 VFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEGDEQKLLMASDAGYG 603

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           F+   S+++A  R GK  + +    ++   LV++   D +  +    ++L+F +  +P++
Sbjct: 604 FVCTFSDLVARNRAGKALITLPENARVMPPLVIEDESDMLLAITSAGRMLMFPVSDLPQL 663

Query: 682 SRGKGVRL 689
           S+GKG ++
Sbjct: 664 SKGKGNKI 671


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/735 (37%), Positives = 434/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL+ R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + ++EGD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYREGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L +DG+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/747 (36%), Positives = 451/747 (60%), Gaps = 25/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 8   LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 68  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  
Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +  
Sbjct: 248 RMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA R
Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q 
Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +  
Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K G
Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    + 
Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +
Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQ 656

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             ++L+F +D +P++S+GKG ++        +  D G++ +        LT I    R  
Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +L   +G+RG  G+L+ +G  R
Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIQALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     ++ S  G  F+V+  ++ A  + GK  L + +   +   + V  V  
Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    +  G T 
Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|332998728|gb|EGK18324.1| DNA topoisomerase IV, A subunit [Shigella flexneri VA-6]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNARAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/753 (36%), Positives = 446/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ +S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDLEALSLQGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSSAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++LQ + +   D+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DNP+  +E+LLE++  PD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA +  EE G     IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKMRAIY-TEEQGD----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  I  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    I  EI+E 
Sbjct: 416 ITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKLELTLGSERRMSTLIKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E + A KA  ++ +I  E +TVV+S +GW R  K H +D +A
Sbjct: 476 AELYGDD-----RRSPVIERAEA-KALSEKDLIPSEAVTVVLSEKGWARCAKGHDIDAAA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD  K      +   ++ L + G+A+   A +L + R  GE +    +++   + 
Sbjct: 530 LSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSLPTARSQGEPMTGRFNMSTGVNF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+   +++++  + GK  + +S+  ++   +KV   T D
Sbjct: 590 EHVVMGELDAMFLMASDAGYGFVASFADLVSKNKNGKALVSLSTGAQLISPIKVNDITTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S              VI     E    + 
Sbjct: 650 NCLAISNEGRMLMFPLRDLPKLGKGKGNKIISIPSARAKTREEFVSVIAVVPKESAVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R       DL  +LG+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKAADLEHYLGERGRRGNKLPRGLQR 742


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++     +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYILPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GDSL  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDSLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPGSGASFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/749 (37%), Positives = 447/749 (59%), Gaps = 27/749 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +TLV    + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 4   STLVPYADEQLPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKAS 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 64  AKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQDDPKSFAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++   E++L  + +  V++   ++    EP V P++ P +L NGT+GIAVGMA
Sbjct: 124 MRYTEARLSAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +A + L++NP+    +L E+I GPD PT   I+  +  + + Y  GRG
Sbjct: 184 TDIPPHNLREVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQKVYETGRG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  EE       IV+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +
Sbjct: 244 SMKMRAVWRKEE-----GDIVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHE 298

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL++WL+
Sbjct: 299 NPIRLVIVPRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSLREILQDWLS 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR   R+  ++RR+ +L GLLIA+LN+DE+I IIR ED PK  ++ RF L+E+
Sbjct: 359 FRMVTVRRRLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHPKQKLMERFELSED 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL+ RLR L +LEE +I+ E   L  E++++  +L+S ++    I  E+  V + F
Sbjct: 419 QANYILDTRLRQLARLEEMKIRDEQQKLEKERDELQKILDSARRLKTLIKKELLAVVDEF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E S A +A  +  +I  EP+TVV+S +GWIRS K H +D SAL +K
Sbjct: 479 GDA-----RRSPMVERSEA-QAFSETELISSEPVTVVLSEKGWIRSAKGHDIDPSALSYK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS ++A    ++   LLL + G++Y LP   L S RG GE +   ++           
Sbjct: 533 AGDSFRVAARGKSSQATLLLDSTGRSYALPTHTLPSARGQGEPVTGRLNPPSGAVFEGLL 592

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAV 663
           + D T K+L+ S  G  FI   S++    R GK  L V +  ++   +L+       +A 
Sbjct: 593 MGDDTQKVLLASDAGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAA 652

Query: 664 VGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSA 715
                +LL F + ++PE++RGKG         R+QS ++  ++ V+  +  +    + S 
Sbjct: 653 FSNEGRLLAFPVSELPELARGKGNKIINIPAARVQSREEFVVALVVFNE--KSTIKVFSG 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R       DL  +LG+RG  G+ +P+GF
Sbjct: 711 KRHLGLKYKDLEHYLGERGRRGNKLPRGF 739


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++ ++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/756 (37%), Positives = 455/756 (60%), Gaps = 29/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEILKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNLRALLL 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR   R++ ++RR+ +L+GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQALIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLLALLGSDAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    +L+ + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     
Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T 
Sbjct: 649 DWLAAVTTEGRLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEYVTDLAV--IPEGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 707 VLQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQR 742


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 4   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 64  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 124 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 184 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 244 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 299 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 419 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 474 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 533 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 592

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 652

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 653 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 711

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 712 QKVVGERGRRGTLM-RGLQR 730


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     ++ S  G  F+V+  ++ A  + GK  L + +   +   + V  V  
Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    +  G T 
Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/747 (36%), Positives = 452/747 (60%), Gaps = 25/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 8   LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 68  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  
Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +  
Sbjct: 248 RMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA R
Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q 
Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +  
Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K G
Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    + 
Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +
Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQ 656

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             ++L+F +D +P++S+GKG ++        +  D G++ +        LT I    R  
Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +L   +G+RG  G+L+ +G  R
Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPSQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P + PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGMAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/746 (36%), Positives = 438/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N +  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NIINYEGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ ++A+++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EAA+ LIDNP+ S++ LL  + GPD+PT   I+ S+E I + Y  GRG
Sbjct: 182 TDIPPHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKED-----GEIIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I +IR+ED+PK  ++ RF L+E 
Sbjct: 357 FRRTTVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAALIDRFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E D L  E++ +  +L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEENELQAEKDRLEEERDSLQLILGSERRLNTLIKKEIQQDAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   + + A KA  +  M   EP+TV++S  GW+R  K H +D+  L +K
Sbjct: 477 ASP-----RLSPLVQRAEA-KAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L   +L S R  GE +   + L     +    
Sbjct: 531 AGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLSLPAGASVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +      LL+ S  G  FI +  ++IA  + GK  + +    K+   +++  ++  +V  
Sbjct: 591 MEQDKQALLMASDAGYGFICQFDDLIARNKAGKALISLPENAKVLTPLRIDNENARLVAL 650

Query: 667 NR--KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RS 718
               ++LIF +  +P +++GKG ++ +             V  F I E  + +  AG R 
Sbjct: 651 TSAGRMLIFPVKDLPSLAKGKGNKIVTIPAAHAKARTELLVRLFLINEQTSLVFHAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D   +  +RG  G+ +P+G 
Sbjct: 711 ITLKPEDWQKFSAERGRKGTQLPRGL 736


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     ++ S  G  F+V+  ++ A  + GK  L + +   +   + V  V  
Sbjct: 589 FECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+       G T 
Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPA--GATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYTEAKLSAYSELLLN 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI GPD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES  A   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V 
Sbjct: 434 EMEIRHEQDELAAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VV 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GWIR+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I  L   G++Y LP  +L S RG GE +   +        +  ++ D   +L+  S+ G 
Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVYLEDEESELIAASTSGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLDAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 449/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 441/746 (59%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ LIDNP+ +++ LL  + GPD+PT   I+ S++ I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       IV+T +P+Q   S++I +IA+ + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKED-----GEIVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RIV+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 SPIRIVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR   R+  +  R+ IL GL+IAYLNIDE+I IIRNED+PK V+++RF+LT+ 
Sbjct: 357 FRRTTVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEPKQVLIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE+++++E D L  E++ +   L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSLQLTLGSERRLNGLIKKEIQQDAKTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       R +   E + A KA  +  M   EP+TV++S  GW+R  K H +D+  + +K
Sbjct: 477 TSP-----RLSPLVERAEA-KAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNISYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L    L S R  GE +   + L     +    
Sbjct: 531 AGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGASVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +      LL+ S  G  FI +  +++A  + GK  + +    ++   +K+T +   +V  
Sbjct: 591 IETENQPLLMASDAGYGFICKFEDLVARNKAGKALISLPENARVLPPLKLTNETALLVAL 650

Query: 667 NR--KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RS 718
               ++LIF    +P +++GKG ++ +       D     V    I E  T +  +G R 
Sbjct: 651 TSAGRMLIFPAKDLPSLAKGKGNKIVTIPAVNAKDRSELLVRLLLIEESSTLVFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 +L  +  +RG  G+ +P+G 
Sbjct: 711 VTLKPEELQKFRAERGRKGTQLPRGL 736


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/732 (38%), Positives = 437/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI+ AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYTEAKLSAYSELLLN 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES  A   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFKIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRQEQDELAAKAAIIREQLGNPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GWIR+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLVPAETVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I  L   G++Y LP  +L S RG GE +   +        +  ++ D   +L+  S+ G 
Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVYLEDEASELIAASTSGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQAKQLDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  +LGKR   G L
Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYLGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 279/752 (37%), Positives = 460/752 (61%), Gaps = 27/752 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +AA+ LIDNP+  +  ++E++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        I++T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWKKE-----GPEIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILAEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +RR  + RR  +R+  +  R+ +L+GLL+AYLN+DE+I IIRNED+PK  ++SRF LTE
Sbjct: 357 EYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEPKAELMSRFGLTE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E++K+++LL S ++    +  EI    E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKERKKLETLLGSERRLNTLLKKEIEADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E   A KA  ++ ++  EPITVV+S++GW+R  K H +D + L++
Sbjct: 477 YGDD-----RRSPLIEREEA-KALTERDLVPSEPITVVLSDKGWVRHAKGHELDPATLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++  ++LL +DG++Y+L + +L S R  GE I   ++++   +I   
Sbjct: 531 KSGDKYLAHARGKSSQPVVLLGSDGRSYSLESHSLPSARSQGEPITGRLNISSGSNIRHL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++ ++ GK  + +    ++     +  +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSA 715
            V    ++L+F I  +P++ +GKG ++          +D  +S +I   + +G T    A
Sbjct: 651 AVTNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKSRDEFVSHLIA--LPKGRTVTLYA 708

Query: 716 G-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           G R     E+DL  + G+RG  G L+P+G  R
Sbjct: 709 GKRKLGLKESDLDSFRGERGRRGGLLPRGLQR 740


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/741 (37%), Positives = 446/741 (60%), Gaps = 22/741 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 9   EGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 129 SRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+ ++++LL  + GPDFPT   I+  +E I + Y+LGRG  ++R
Sbjct: 189 HNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRI
Sbjct: 249 ATWKKED-----GEIVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 304 VLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRTT 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  + +  +  R+ IL+GL+IA+LNIDE+I IIR ED+PK  +++RF+L++ Q +AI
Sbjct: 364 VTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEPKAELMARFNLSDEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E+  ++ +L S ++    +  EI++  +I++    
Sbjct: 424 LNLRLRHLAKLEEHELQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKIYASP-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   L +K GD  
Sbjct: 482 ---RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKY 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +    + + + G++Y L    L S R  GE +   + L     I    + +  
Sbjct: 538 LAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGATIDQLLIENED 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRK 669
             LL+ S  G  FI + +++IA  + GK  + +    K+   L +K +   +  +    +
Sbjct: 598 QPLLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVALTSAGR 657

Query: 670 LLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSE 723
           +LIF    +PE+S+GKG   V + S      S+++     I E  + +  +G R      
Sbjct: 658 MLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVHLLLIEENSSLVFHSGRRKIVLKP 717

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
            DL  +  +RG  G+ +P+G 
Sbjct: 718 EDLQKFRAERGRKGTQLPRGL 738


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/741 (37%), Positives = 444/741 (59%), Gaps = 23/741 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  G+ +KKS
Sbjct: 10  SVETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKAGSKYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYTE+
Sbjct: 70  ARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSADDPKSFAAMRYTES 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ + AE++L  + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT +P H
Sbjct: 130 KLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGTTGIAVGMATDVPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +A + L++NP+ ++  L EY+ GPD+PT   I+   + +   Y+ GRG  ++RA
Sbjct: 190 NLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQAMYQSGRGSVKMRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
            W VE+       IVV  +PYQV  SR++E+IA  + A+++P++ D+RDES  +   R V
Sbjct: 250 SWSVED-----GAIVVNALPYQVSGSRVLEQIAAQMQARKLPMVSDLRDESDHEHATRFV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++  +D + LM  +F  +D+E  + +N+N++ +   P V  L+ IL EWL  RR  +
Sbjct: 305 IVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKALNVILGEWLRFRRTTV 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R+  ++RR+ +L+G LIAYLNIDE+I IIR E++PKP +++RF L++ Q +AIL
Sbjct: 365 QRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPALIARFGLSDVQAEAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+LR+L KLEE +I+ E D L AE++K++  L S  +    I  E+  V E+       
Sbjct: 425 DLKLRNLAKLEEMKIRGEQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVHGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   +   A +   +  +   +P+T+V+S  GWIR+ K H +D ++L++K GD  K
Sbjct: 482 --RRSPITQREEA-RPFSETELASSDPLTIVLSEMGWIRAAKGHDIDPTSLNYKSGDGFK 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A    +    ++  + G+AY++ +  L S RG GE +   I+               + 
Sbjct: 539 LAARGKSNLPTVVFDSTGRAYSIASHALPSARGQGEPLTGRINPPSGATFEGLLTGADSD 598

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH--VAVVGENRK 669
           K L+ S  G  F+   +++ +  + GK  L +    ++     V  GD   VA V    +
Sbjct: 599 KFLLASDAGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGR 658

Query: 670 LLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV---ICFKICEGLTWIDSAGRSYNRSE 723
           LL+F +  +PEM+RGKG   + +   K     +V   +C    + +  + +  +      
Sbjct: 659 LLVFPLSDLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLEVTAGKQHLKLKP 718

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
            DL  + G+RG  G+ +PKGF
Sbjct: 719 ADLEHYRGERGRRGNKLPKGF 739


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/687 (39%), Positives = 421/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G  R +   V    KA  ++ ++  E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++ +GKG ++
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKI 677


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSLMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K V  +  D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAG- 716
            +    ++L+F I  +P++++GKG   + + + K     +V+   I   +G +    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 4   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 64  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 124 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 184 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 244 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 299 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 419 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 474 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 533 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 592

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 652

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 653 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 711

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 712 QKVVGERGRRGTLM-RGLQR 730


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/750 (37%), Positives = 445/750 (59%), Gaps = 34/750 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +       KE+ + 
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLK------KELQAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           S + G  R +        KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 473 SNNFGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A    +   +  + + G++YTL   +L S RG GE +   +       +    + 
Sbjct: 533 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVLME 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               +LL+ S  G  FI   +++I+  R GK  L +    ++   + V    D +  + +
Sbjct: 593 PEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYN---- 720
             ++L+F + ++P+MS+GKG ++ S     I         + L W  I   G +      
Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIIS-----IPSADAASGADKLAWLMILPPGSAITLHVG 707

Query: 721 ------RSENDLLGWLGKRGGVGSLVPKGF 744
                 RSE +L  +   RG  G+L+P+G 
Sbjct: 708 KRKLLLRSE-ELQKFRADRGRRGTLLPRGL 736


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/754 (37%), Positives = 451/754 (59%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ + L    EE YL Y++  I +RA+P + DG KPV RRII AMSE+G
Sbjct: 1   MSDKQNLSLQGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +EL+L  + +   D++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+ EA L +ID+P+ ++  +LE++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDVPPHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + +EE       IV++ +P++V   ++++ IA+ +I K++P++ D+RDE
Sbjct: 241 SGRGSFKSRAVYHMEE-----GDIVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+++ +D + LM  +F  +D+E    +N+N++ + + PQV  L  IL 
Sbjct: 296 SDRNHPTRLVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGLLKILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R+  + RR  FR+  I+ R+ +L+GLLIAYLNIDE+I IIRN D  K  +++RF 
Sbjct: 356 EWLVYRKRTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDDSKAELITRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL ++LR L KLEE QI+SE+ +L  EK+K+  LLNS ++++N +       
Sbjct: 416 LSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLLLLLNS-ERRFNTLLK----- 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KEI + + + G  RR+   E   A KA  ++ ++  E I+V++S +GWIRS K H VD  
Sbjct: 470 KEIKADALNYGDARRSPLVERLEA-KALTEKELLPNEQISVILSRQGWIRSAKGHDVDAQ 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           AL++K GD   I+    +    + +   G+AY+L A +L S R  GE +    + N    
Sbjct: 529 ALNYKTGDEFLISAQGCSNQSAIFIDASGRAYSLDAHSLPSARSQGEPLTGRFNQNEQCA 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
            V+  + D   + ++ S  G  FI + S+I +  + GK  + +S    +  V K++    
Sbjct: 589 FVSVLLGDDNDQYIISSDHGYGFIAKFSDINSRNKNGKALINLSENAYLLPVQKLSNNAD 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC--EGLTWI 712
           D    +    ++LIF ++ +P +SRGKG ++ +      +     V   +I   EG   +
Sbjct: 649 DLCLTISNEGRMLIFPVNSLPNLSRGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +  R      +DL+ + G+RG  G  +P+G  R
Sbjct: 709 HAGKRKLTLKASDLVAYQGERGRRGGKLPRGLQR 742


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/730 (37%), Positives = 434/730 (59%), Gaps = 17/730 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA RYTEA+++Q +E++L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSEVLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  V+++D ++    EPV  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMATDIPPHNLREVIKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP  S  KL EYI GPD PT   I+ S++ +++    GRG +R+RA + VE+     
Sbjct: 199 LIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRGSYRMRAVYTVEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES      R+V+  ++  +D D
Sbjct: 256 --IIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHVNPTRLVIVLRSNRVDAD 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R+E + RR  + +  I
Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIGIRKETVTRRLQYHLNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED PK V++  F + E Q +AIL L+LR L KL+
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDHPKAVLIQTFKIDETQAEAILELKLRHLAKLQ 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A    I   L + +   N I  E++E  + F        RR+   E  
Sbjct: 434 EMEIRQEQDELSARAALIREQLANPESLKNLIIGELKEDAKKFGD-----ERRSPIVERE 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            A +   +Q +I  EP+TV++S  GWIRS K   VD   L+++ GD         +  R+
Sbjct: 489 GAVQMR-EQDLIPAEPVTVILSEAGWIRSAKGADVDAEKLNYRAGDQYLSHASGKSNQRV 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            +L   G++Y L   +L S RG GE +   +   +    +   V +   +++ +SSKG  
Sbjct: 548 YILDETGRSYALAINSLPSARGLGEPLSSKLSPANGVSFIQILVEEDDQEIIAISSKGYG 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           F  +  ++  N + GK FL +    K + L+V     H+A++ +  +LL+  + ++P ++
Sbjct: 608 FKTQAKQLDTNAKAGKAFLSIPEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSELPSLN 667

Query: 683 RGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           +GKG +L Q  +D  +  +    + E +  I +  +  N    DL  +LGKR   G L+P
Sbjct: 668 KGKGNKLIQLEQDEQLLSMTTLNLNEIIQVI-AGQKILNIKPGDLDKYLGKRASKGQLLP 726

Query: 742 KGFPRSGKFL 751
           +G+ +  + L
Sbjct: 727 RGYQKVNRLL 736


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|332990040|gb|AEF09023.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 752

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/737 (37%), Positives = 444/737 (60%), Gaps = 25/737 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 128 SKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GRG  ++R
Sbjct: 188 HNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  EE       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWLA RR  
Sbjct: 303 VLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEWLAFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR +FR+  I  R+ IL+GL+IA+LN+DE+I IIRNED PK  +++RF L++ Q +AI
Sbjct: 363 VTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNPKAELIARFQLSDEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + F+    
Sbjct: 423 LNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   EP+TV++S +GW+R  K H +D+  L +K GDS 
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ + + G++Y L   +L S R  GE I   I L     +    + + +
Sbjct: 537 LAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEES 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI +  ++++  + GK  + ++   K+   +L+ +   + +  +    
Sbjct: 597 RKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F + ++PE+S+GKG ++     Q+ K+    +S ++       L ++ S  R    
Sbjct: 657 RVLVFPVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGS 738
              D+  + G+R   G+
Sbjct: 716 KPTDIEHYRGERARKGT 732


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E      E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/695 (39%), Positives = 417/695 (60%), Gaps = 32/695 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM+E+GL+  A  +KSA 
Sbjct: 18  ESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPRKSAA 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T
Sbjct: 78  VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLT 137

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A+L+++ +D   VDF+  Y+    EP + PS+ P +L NG SGIAVGMAT IPSHN++
Sbjct: 138 PIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHNLR 197

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I + YR GRG  +VRA W 
Sbjct: 198 EVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAISDIYRSGRGSVKVRATWK 257

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299
           +E++ RG W  VVTE+P+     R++E+I EL      + K+             + +L+
Sbjct: 258 IEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKSLSPEQLALKQTVLAMLD 317

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES  D  VR+V  PK+++ D       +   + +ET   +N+ ++     P+   L
Sbjct: 318 TVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVSINLVMIGGDGKPRQKAL 377

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+EW+  R   + RRS F++Q ++ R+ IL+G     LNID++I IIR  D+PKP +
Sbjct: 378 GDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNIDKVIKIIRESDEPKPAL 437

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L+E Q D IL +RLR L +LE  +I+ EL  L +EK  +  LL+      N  + 
Sbjct: 438 MDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRSEKSTLQDLLD------NPSSM 491

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI +     G +R T  EV  A+KA ++  +I+ EP+TVVIS +GW+R+   H 
Sbjct: 492 KRLVIKEIEADEKQFGDKRRTLIEV--AEKAVVETRVID-EPVTVVISQKGWVRARTGHG 548

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D +   FK  D+L       T D +L+  ++G+ Y++    L   RG G  I  L++L 
Sbjct: 549 HDAAQFTFKASDALYDTFECRTVDTLLVFGSNGRIYSVAVAALPGARGDGVPITTLVELA 608

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVK 655
               ++  F   +   LL+ S+ G  F  +  ++++ TR GK F+ +    E      + 
Sbjct: 609 SGTRVLHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIF 668

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                +A + E  ++L+F ID+I  ++  G+GV L
Sbjct: 669 AGASAIACLSEKGRVLVFGIDEIKSLTAGGRGVIL 703


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/746 (36%), Positives = 442/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTPDGAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFDISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLASERKMNTLLKKELQADSDAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A    +   ++ + + G++Y L    L S RG GE +   +       +    + 
Sbjct: 533 DGYLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
           D T KLL+ S  G  F+   +++++  R GK  L + +   +   L +    D +  +  
Sbjct: 593 DDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG   V + S +     D + + +    E    +    R   
Sbjct: 653 AGRMLMFPVGDLPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPESDITLHVGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+L+P+G  R
Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/746 (36%), Positives = 444/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LID+P  S+++LL+ + GPD+PT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+++ +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLGSERKLNTLLKKELQADSDAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 E-----RRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A    +   ++ + + G++Y L    L S RG GE +   +       +    + 
Sbjct: 533 DSFLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
           D T KLL+ S  G  F+   S++++  R GK  L + S  ++   L +    D +  +  
Sbjct: 593 DDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG   + + S +     D + + +    E    +    R   
Sbjct: 653 AGRMLMFPVGDLPQLSKGKGNKIISIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +   RG  G+L+P+G  R
Sbjct: 713 LKAADLQKFRADRGRRGTLLPRGLQR 738


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/687 (39%), Positives = 421/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G  R +   V    KA  ++ ++  E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++ +GKG ++
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKI 677


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 444/745 (59%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  R+R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVEIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  ++ R+ IL+GLL AYLNIDE+I IIRNE+ PK   +SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDPKAEFMSRFGLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I++E D L  E+E+++ LL S ++    I       KEI + +  
Sbjct: 422 LEIKLRQLAKLEEIKIRAEQDELAKEREQLEKLLGSERRLNTLIK------KEILADAEK 475

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ +I  E ITVV+S +GWIR  K H VD S+L++K GDS
Sbjct: 476 YGDDRRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSSLNYKSGDS 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                   +    + L +DG++Y L + +L S R  GE I   ++L    ++    + + 
Sbjct: 535 YLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAED 594

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
               L+ S  G  FI + +++++  + GK  L V     +   + V  +  D +  +   
Sbjct: 595 DQIWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNE 654

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF-KICEGLTWID--SAGRSYNR 721
            ++L+F I  +P++ +GKG   + + S +     + + +  +    T +   +  R    
Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISADTHVTLYAGKRKLGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+++P+G  R
Sbjct: 715 KPSDLYNFRGERGRRGAMLPRGLQR 739


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/731 (38%), Positives = 439/731 (60%), Gaps = 25/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL  GA +KKSAR VG+V+GK 
Sbjct: 19  EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAGAKYKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYPLI+GQGN+G+ D   S AA RYTEAR+   AEL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEARLAPFAELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            V +  V++   ++    EP + P++ P++L NGT GIAVGMAT IP HN+ E+  A L 
Sbjct: 139 EVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVTAACLH 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G  R+RA++ VE+     
Sbjct: 199 LLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRAQYMVEQ----- 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +   R+VL P  R +D +
Sbjct: 254 GNIVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPYARRMDVE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EW   R E L RR  +R++ +
Sbjct: 314 TVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFYFRIETLRRRFRYRLEKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+++L GLLIAYLNIDE+IAIIR+E+ PKPV+++RF L++ Q +AIL L+LR L +LE
Sbjct: 374 EDRLQVLAGLLIAYLNIDEVIAIIRDEEAPKPVLMARFKLSDRQAEAILELKLRYLARLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502
           E +I++E   L AE++ ++ +L S     ++I   +R+  E+ + +   G  RR+   E 
Sbjct: 434 ETKIRAENKALAAERKGLEKMLGS----ESRIKDLLRQ--ELLADAKKFGDARRSPIVER 487

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           S A     +Q+++  E ITVV+S +GW+R+ KS  V+ +AL ++ GDS + +    +   
Sbjct: 488 SSATVLD-KQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYRASARGRSNQS 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            + L + G++YTLPA  L S RG GE +   + +    + +   + +     L+ S+ G 
Sbjct: 547 AIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFIAILLAEPEEFYLMASNAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIP 679
            F+ +   +    R GK  L VS+  K    V VT    D VAV     +LL+F +  +P
Sbjct: 607 GFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVTDRELDQVAVATNVGRLLLFPLRDLP 666

Query: 680 EMSRGKGVRLQSYKDG----GISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKR 733
            ++RGKGV+L +        G   V    +    G   + +  R       DL  + G+R
Sbjct: 667 FIARGKGVKLINISSTRLAQGQEAVRALAVVSQGGALQVFAGRRHLTLKSEDLEPYQGER 726

Query: 734 GGVGSLVPKGF 744
              G  +P+GF
Sbjct: 727 ARRGLTLPRGF 737


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/747 (36%), Positives = 450/747 (60%), Gaps = 24/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LI+ P  ++++LL+ + GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  I+ EWL +R
Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PK V++SRF ++E Q 
Sbjct: 359 RDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAVLMSRFEISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELQADSQTYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLREREEA-KALSETDLVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+   A    +   +  + + G++YTL   +L S RG GE +   + L     +    + 
Sbjct: 533 DNYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTLPPGAVMEQVLME 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  FI   +++++  R GK  L +    K+   + V    D +  + +
Sbjct: 593 PDEQKLLMASDAGYGFICTFADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISD----VICFKICEGLTWIDSAGRSY 719
             ++L+F + ++P+MS+GKG   + + S +    SD    ++       +T      +  
Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGSDKLVWLLILPTGSAITLHVGKRKLV 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
            RSE +L  +   RG  G+L+P+G  R
Sbjct: 713 LRSE-ELQKFRADRGRRGTLLPRGLQR 738


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/742 (36%), Positives = 439/742 (59%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   + +KK
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKYKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTE
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T IP 
Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  + R
Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A +  E+       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   R+
Sbjct: 243 AVYERED-----GDIVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R   
Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +AI
Sbjct: 358 VRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGISDRQAEAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +     
Sbjct: 418 LELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGDD-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  +  ++  +P+TVV+S +GW+R+ K H VD+  L +K GD  
Sbjct: 476 ---RRSPLVERDDA-KALDETDLLSADPVTVVLSEKGWVRAAKGHEVDVEGLSYKAGDKY 531

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K +    +   +  + + G+ Y+LPA  L S RG GE +   +        + A +    
Sbjct: 532 KASAKGKSNQPVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGKDK 591

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ +  G  F+V  ++++AN + GKT L V    ++   + +     D +A+V    
Sbjct: 592 DAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSNEG 651

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA------GRSYNRS 722
           +LL+F + ++PEM RGKG ++ S     +++ + F     +   D A       R     
Sbjct: 652 RLLVFPVSELPEMVRGKGNKMMSIPGARVAERVEFVQDVQVVGPDDALTLYAGKRHLTLK 711

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
             DL  + G+RG  G+ +P+GF
Sbjct: 712 AGDLEHYYGERGRRGAKLPRGF 733


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/685 (38%), Positives = 426/685 (62%), Gaps = 16/685 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   MIQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ EAA+ LID P  ++++LLE + GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P +  +D D +M  +F  +D++  + +N+N++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +  ++ + RR+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMSRFDISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E+    + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELLADSQTYDD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 D-----RRSPLHEREEA-KALSENELVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   +  + + G++YTL   +L S RG GE +   +       I    + 
Sbjct: 533 DSYRAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVLME 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGE 666
               KLL+ S  G  FI   +++++  R GK  L +  ++E    L V    D +  + +
Sbjct: 593 ADDQKLLMASDAGYGFICTFADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAITQ 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691
             ++L+F +  +P+MS+GKG ++ S
Sbjct: 653 AGRMLMFPVADLPQMSKGKGNKIIS 677


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL+ R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLTAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L +DG+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASCAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 444/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLSYKAGDSYKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     I    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPVTGKLTLPPGATIDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +    ++   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIRSETDMLLAITHAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAHLYVMPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 435/735 (59%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++++F+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLMAKFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQILAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GDSL  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDSLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGASFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++  ++    +VT    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
           +   +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 AASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S  +  + +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASEHKMNSLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +    + + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPGVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVAGERGRRGTLM-RGLQR 733


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A  RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALI+ P  ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D   +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/746 (37%), Positives = 446/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 4   MTHDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNNAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L+ + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  AA+AL++ P  S+E LLE++ GPDFPT   I+  R  I + Y  G+G  
Sbjct: 184 IPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWHKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA+R
Sbjct: 299 TRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGLLEILTEWLAYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR +FR+  + +R+ IL+GLL A+LNIDE+I IIR ED+PKPV++ RF L++ Q 
Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPVLMQRFELSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+   E F  
Sbjct: 419 EAILELKLRHLAKLEETKIRGEQDELAKERDQLQALLASERKLSTLIRKEIQADAEAFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A +A  +   I  EP+T+V+S  GW+RS K H +D S L +K G
Sbjct: 479 E-----RRSPITEREEA-RAMSEHDFIPSEPVTIVLSESGWVRSAKGHDIDASGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ + + G++Y L    L S RG GE +   +       I    + 
Sbjct: 533 DSFRAAAKGKSNQPVVFMDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G  D +  +  
Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG   V + + +     D + + +    +    +    R   
Sbjct: 653 AGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLAWLLVLPPQTSITLHVGKRKLV 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL  +  +RG  G+L+P+G  R
Sbjct: 713 LRPEDLQKFRAERGRKGTLLPRGLQR 738


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/682 (37%), Positives = 426/682 (62%), Gaps = 16/682 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSEMAERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++  + +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNSLLRKELQADSDAYGDD 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 476 -----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     I    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATIEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   +V++   D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDENDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRL 689
            ++L+F +D +P++S+GKG ++
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKI 671


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E      E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  ++ DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K V  +  D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAG- 716
            +    ++L+F I  +P++++GKG   + + + K     +V+   I   +G +    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/729 (37%), Positives = 441/729 (60%), Gaps = 26/729 (3%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           RF  E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V
Sbjct: 5   RFT-EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDV 63

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD++ Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE++++++AE
Sbjct: 64  LGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAE 123

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E+  
Sbjct: 124 ILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINELAA 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GRG  ++RA W  EE 
Sbjct: 184 ASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKREEN 243

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319
                 IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RIVL P++  
Sbjct: 244 N-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPRSNR 298

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWLA RR  + RR +FR
Sbjct: 299 IDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRRLNFR 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF L++ Q +AILNLRLR L
Sbjct: 359 LDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNPKAELIARFQLSDEQAEAILNLRLRHL 418

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + F+       RR+  
Sbjct: 419 AKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-----RRSPL 473

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E + A KA  +  +   EP+TV++S +GW+R  K H +D+  L +K GDS     +  +
Sbjct: 474 VERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSYLAHAYGKS 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              ++ + + G++Y L   +L S R  GE I   I L     +    + + + K+L+ S 
Sbjct: 533 NQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEESRKVLMASD 592

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSID 676
            G  FI +  ++++  + GK  + ++   K+   +L+ +   + +  +    ++L+F + 
Sbjct: 593 SGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVS 652

Query: 677 QIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           ++PE+S+GKG ++     Q+ K+    +S ++       L ++ S  R       D+  +
Sbjct: 653 ELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SGKRKITLKPTDIEHY 711

Query: 730 LGKRGGVGS 738
            G+R   G+
Sbjct: 712 RGERARKGT 720


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/753 (36%), Positives = 447/753 (59%), Gaps = 36/753 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 4   LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+ALID P   ++ LL ++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES +   
Sbjct: 244 RMRAVWNKEDN-----SAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDQQNP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWL +R
Sbjct: 299 TRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGLVEILTEWLTYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNID++I IIR+ED+PKPV++  F +++ Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPVLMQSFGISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE++I+ E D L+ E++++ +LL S ++        I   KEI + 
Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDALVKERDQLQALLASERK------LNILLKKEIQAD 472

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           +   G  RR+   E + A KA  +   +  EP+T+V+S  GW+RS K H ++   L +K 
Sbjct: 473 AQAYGDDRRSPIIERAEA-KAMNEHDFVPSEPVTIVLSEMGWVRSAKGHDIEPGGLSYKA 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    +
Sbjct: 532 GDSFRSAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLM 591

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVV 664
                KLL+ S  G  FI   ++++A  R GK  + +  + K+   +++ G+    +++ 
Sbjct: 592 APDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSIT 651

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------ID 713
              R +L+F +  +P++S+GKG ++ S     I         + L W           + 
Sbjct: 652 AAGR-ILMFPVTDLPQLSKGKGNKIVS-----IPATQAATGEDKLAWLLVLPPQTSITLH 705

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              R       DL  +  +RG  G+ +P+G  R
Sbjct: 706 VGKRKLTLRPEDLQKFRAERGRKGTQLPRGLQR 738


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/758 (36%), Positives = 448/758 (59%), Gaps = 27/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+ +A + LIDNP++ +E+L+E + GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D LM  +F  +D+E  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +  R+ IL+ L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++IK+E   L AE+EK++ LL+S ++    I  E+++ 
Sbjct: 416 LTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S + +A  +Q ++  E +TVV+S +GW+R  K H +D +A
Sbjct: 476 AETYGDE-----RRSPLVERSES-RALSEQELVPAEAVTVVLSEKGWVRCAKGHDIDPTA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +    + + + G+A+      L S R  GE +     L+  + +
Sbjct: 530 LSYKAGDGFLCAASGRSNHATVFIGSTGRAFATDTHTLPSARSQGEPVTTRFQLSPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
             A + +     L+ S  G  FI +  ++++  + GK  L + +  ++   K V K   +
Sbjct: 590 AHALLGEDGQCFLLASDAGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGV--------RLQSYKDGGISDVICFKICEGLTW 711
            +  +    ++L+FS+D +P++++GKG         R +S ++  +   +  +      W
Sbjct: 650 SILAITNEGRMLLFSVDALPQLAKGKGNKIIGIASDRAKSREELLVHLHVVPQDTAVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             +  R      +DL  + G+RG  G+ +P+G  R  K
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDK 745


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/760 (36%), Positives = 446/760 (58%), Gaps = 37/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 13  LANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAK 72

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA R
Sbjct: 73  AKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 133 YTEAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTTGIAVGMATD 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +   Y  GRG +
Sbjct: 193 IPPHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAIYETGRGSY 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA + ++   +    +++  +PYQV  +++ E+IA+L+  K++P + DI DES  +  
Sbjct: 253 KMRATFHIDPKEKN--LVIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDIHDESDHENA 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIVL  K+  +D   +M  +F  +D+E+ + +NMN++ +   PQV  L  IL+EWL  R
Sbjct: 311 CRIVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCR 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++  + LTE Q 
Sbjct: 371 RSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTEIQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL++RLR L KLEE +++ E D L AE+  I   L++     N +      + E+ + 
Sbjct: 431 NAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTNLM------IDELTAD 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G  R +        +A  +  ++  EP+T ++S  GWIR+ K H VD + + ++ G
Sbjct: 485 MKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWIRAAKGHDVDAAGMAYRSG 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS +  + A   ++I +L + G++Y++ A +L S RG G+ +  ++              
Sbjct: 545 DSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQLLTG 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV------------ 656
           D+  ++++ SS+G  FI     + +N + GK  + ++++ ++  + ++            
Sbjct: 605 DNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQTEVIVSSEN 664

Query: 657 ----------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-I 705
                     T DH+AVV     LLIF++D +PE +RGKG ++ + K  G  +V+    +
Sbjct: 665 NGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARGKGNKMINLK--GDEEVLTITPL 722

Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            +  + + +AG R       DL  +  KRG  G  +P+GF
Sbjct: 723 SKHDSLVITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGF 762


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        I +  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IFIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL+ R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAEERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L +DG+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI+ AMSE+GL   A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E + L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMSNLLKKELQADSDAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE I   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPITGKLTLPPGATVDHMLMEGEEQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  FI   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFICTFNDLVARNRAGKALISLPDNAHVMPPLVIENDNDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S         + G++ +        LT +    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPSAEAAKGEDGLAHLFILPPQSTLT-VHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  GSL+ +G  R
Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/747 (36%), Positives = 449/747 (60%), Gaps = 25/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 8   LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 68  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+     I + Y  GRG  
Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENGRGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +  
Sbjct: 248 RMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA R
Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q 
Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +  
Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K G
Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    + 
Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  +  
Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITL 656

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             ++L+F +D +P++S+GKG ++        +  D G++ +        LT I    R  
Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746
                +L   +G+RG  G+L+ +G  R
Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/727 (38%), Positives = 445/727 (61%), Gaps = 19/727 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSAR VG+V+GK 
Sbjct: 15  EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA M++ A+++L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + 
Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA +  +   + +
Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+  K   L+ D
Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ RR  +R+  I
Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+++LR L KLE
Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E ++ +E D L AE+  I   LN+ +     +  E+     I    T    RR+    V 
Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDEL-----IADAKTHGDARRSPV--VQ 485

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+ ++L+   +I  EPIT ++S  GWIR+ K H  D + ++++ GD+        +T+R
Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619
           ++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T     +L+ SS
Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G  FI + + +    + GK+ + ++    + +VV    D  VAV   N  LLIF+ D++
Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665

Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           P++++GKG +L + K G  I+ +      + L  I +  R+   + ND+  ++  R   G
Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724

Query: 738 SLVPKGF 744
           + +PKGF
Sbjct: 725 NPLPKGF 731


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/730 (38%), Positives = 435/730 (59%), Gaps = 23/730 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   A +KKSAR VG+V+GK 
Sbjct: 19  EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYPLI+GQGN+G+ D   S AA RYTEAR+   AEL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEARLAPFAELLLA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            V +  V++   ++    EP + P++ P++L NGT GIAVGMAT IP HN+ E+  A L 
Sbjct: 139 EVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVAAACLH 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G  R+RAR+ VE+     
Sbjct: 199 LLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRARYRVEQ----- 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +   R+VL P  R ++ +
Sbjct: 254 GNIVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPHARRIEVE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E  + +N NV+ +   PQV  L  +L EW   R   L RR  +R++ +
Sbjct: 314 TVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGTLRRRFQYRLEKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+++L GLLIAYLNIDE++AIIRNE+ PKPV+++RF L++ Q +AIL L+LR L +LE
Sbjct: 374 EDRLQVLAGLLIAYLNIDEVVAIIRNEEVPKPVLIARFKLSDRQAEAILELKLRYLARLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I++E   L AE+++++ +L S  +  + +  E+    E F  +     RR+   E  
Sbjct: 434 ETKIQAENKALAAERKRLEKMLGSESRIKDLLRQELLADTEKFGDA-----RRSPIVERP 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            A  A  QQ+++  E ITVV+S +GW+R+ KS  V+ +AL ++ GDS + +    +    
Sbjct: 489 SA-TALDQQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYRASARGRSNQPA 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + L + G++YTLPA  L S RG GE +   + +    + V   + +     L+ S+ G  
Sbjct: 548 VFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFVAILLAEPEEFYLMASNMGYG 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPE 680
           F+ +   +    R GK  L VS+  K    V V     D VAV     +LL+F +  +P 
Sbjct: 608 FLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGRLLLFPLRDLPF 667

Query: 681 MSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRG 734
           ++RGKGV+L       +  G  +      I +G      AGR +      DL  + G+R 
Sbjct: 668 IARGKGVKLINISSTRFAQGQEAVRALAVISQGGALQVFAGRRHLTLKSEDLEPYQGERA 727

Query: 735 GVGSLVPKGF 744
             G  +P+GF
Sbjct: 728 RRGLTLPRGF 737


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/685 (38%), Positives = 431/685 (62%), Gaps = 16/685 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPVLMSRFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E  +L  E+++I  +L S ++    +  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSDLEKERDQIQGILASERKMNTLLKKEIQADADAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D  AL +K G
Sbjct: 479 D-----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    ++   +   ++ + + G++Y L   +L S RG GE I   + L     +    + 
Sbjct: 533 DGWLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGEPITGKLTLPPGAVVEHMLMT 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   +++IA  R GK  + +     +   L ++   D +  +  
Sbjct: 593 GEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691
             ++L+F +  +P++S+GKG ++ S
Sbjct: 653 AGRMLMFPVADLPQLSKGKGNKIIS 677


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/750 (37%), Positives = 450/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++   + V  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + + K     +V+     + +G+T    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  G L+P+G  R
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQR 740


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S K +  ++  +     E+ + +   G  R
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILES-KTKLKKLIKD-----ELIADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 484 RSPLVQRDAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
               +PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   GSL+P+G+
Sbjct: 724 VGARASRGSLLPRGW 738


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/750 (37%), Positives = 449/750 (59%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++   + V  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + + K     +V+     + +G+T    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  G L+P+G  R
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQR 740


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/750 (36%), Positives = 445/750 (59%), Gaps = 34/750 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 18  LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATAK 77

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 78  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 137

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 138 YTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 197

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 198 IPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +  
Sbjct: 258 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 313 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVFR 372

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 373 RDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISETQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +       KE+ + 
Sbjct: 433 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLK------KELQAD 486

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           S + G  R +        KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 487 SNNFGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 546

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A    +   +  + + G++YTL   +L S RG GE +   +       +    + 
Sbjct: 547 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVLME 606

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               +LL+ S  G  FI   +++I+  R GK  L +    ++   + V    D +  + +
Sbjct: 607 PEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQ 666

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYN---- 720
             ++L+F + ++P+MS+GKG ++ S     I         + L W  I   G +      
Sbjct: 667 AGRMLMFPVGELPQMSKGKGNKIIS-----IPSADAASGADKLAWLMILPPGSAITLHVG 721

Query: 721 ------RSENDLLGWLGKRGGVGSLVPKGF 744
                 RSE +L  +   RG  G+L+P+G 
Sbjct: 722 KRKLLLRSE-ELQKFRADRGRRGTLLPRGL 750


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+ A W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRIGAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GKT + +     +   LV++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +D +P++S+GKG ++        +  D G++ +        LT I    R       +L
Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  G+L+ +G  R
Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/738 (38%), Positives = 423/738 (57%), Gaps = 36/738 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+   +++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL   A 
Sbjct: 30  LNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSEMGLRADAK 89

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RY
Sbjct: 90  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRY 149

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT I
Sbjct: 150 TEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEI 209

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN++E+  AA+AL+ +P++S  +LLE + GPD+P GG I+ S   I + Y  GRG  +
Sbjct: 210 PSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIYETGRGSIK 269

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR------------ 294
           VRARW +EE+ RG W IVV E+P      R++++I E+      + K+            
Sbjct: 270 VRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTLEQNNLKST 329

Query: 295 -IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES++D  VR+V  PK++++D +  +  +   + +E+  P+N+ ++     
Sbjct: 330 ILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDDR 389

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+   L  IL EW+  R   + RR+  R+  +  R+ IL+G L   LNID++I IIRN D
Sbjct: 390 PRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKVIKIIRNSD 449

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ ++ LL S    
Sbjct: 450 EPKADLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKELKTERDDLEGLLQS---- 505

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
               A   R +KEI S   D G  R T  +    DK  + +  +  EP+TV++S +GW+R
Sbjct: 506 --DTALRKRIIKEIESDMKDFGDDRRTLIQ---EDKRAVAETKVIDEPVTVIVSQKGWVR 560

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             + H  D +   FK GD+L       T D I    +DG+ YT+P   L   RG G  + 
Sbjct: 561 VRQGHEHDPTQFSFKAGDALYATFEVRTVDVIQGFGSDGRVYTVPVSELPGARGDGSPLT 620

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSE 647
             ++L     +V  +   S   +L+ +  G  F+   +++    + GK+FL    KV  +
Sbjct: 621 SFVNLASGSQMVAYYAGQSDDLVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGD 680

Query: 648 EKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705
             +    V+V    VA + E  KLL+F +D++  + + GKGV L    D           
Sbjct: 681 APLGAAKVRVGMKQVACLSEASKLLVFPLDELKRLPTGGKGVILMGLDDNEFLASAIAVG 740

Query: 706 CEGLTWIDSAGRSYNRSE 723
            +G T+   AGR+   +E
Sbjct: 741 PDGATY-SGAGRAGKPTE 757


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/750 (37%), Positives = 450/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I   +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDNYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++++GKG   + + + K     +V+     + +G +    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/743 (37%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ L+DNP+  +++L+E++ GPD+PT   I+     + + Y+ GRG  R+R
Sbjct: 187 HNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLKKVYKSGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AIWHKE-----NGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL  RR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIRNE+ PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENPKAELMSRFELSVIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI+   E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKYGDD-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K GD+ 
Sbjct: 480 ---RRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    + D  
Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V  + K+   + +  +  D + V+    
Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++          ++  +S +I     E +T I +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +DL  + G+RG  G+++P+G 
Sbjct: 715 KASDLDNFRGERGRRGTMLPRGL 737


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/727 (37%), Positives = 446/727 (61%), Gaps = 19/727 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSAR VG+V+GK 
Sbjct: 15  EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA M++ A+++L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + 
Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA +  +   + +
Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+  K   L+ D
Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ RR  +R+  I
Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+++LR L KLE
Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E ++ +E D L AE+  I   LN+ +     +      + E+ + +   G  R +   V 
Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+ ++L+   +I  EPIT ++S  GWIR+ K H  D + ++++ GD+        +T+R
Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619
           ++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T     +L+ SS
Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G  FI + + +    + GK+ + ++    + +VV    D  VAV   N  LLIF+ D++
Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665

Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           P++++GKG +L + K G  I+ +      + L  I +  R+   + ND+  ++  R   G
Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724

Query: 738 SLVPKGF 744
           + +PKGF
Sbjct: 725 NPLPKGF 731


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/746 (37%), Positives = 446/746 (59%), Gaps = 27/746 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GLD  +  KK
Sbjct: 9   EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIAVGMAT +P 
Sbjct: 129 ARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y  G+G  R+R
Sbjct: 189 HNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYETGKGSIRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDES  +   RI
Sbjct: 249 AVYRVED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D   LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L EWL  R   
Sbjct: 304 VIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLLEWLEFRIGT 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF LTE Q D I
Sbjct: 364 VRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFDLTEIQADYI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L  RLR L +LEE +I+ E D LL E++++ +LL S  +    +  E+ E  E +     
Sbjct: 424 LETRLRQLARLEEMKIRGEQDELLKEQKRLTTLLGSDAKLRKLVRSELLEDAETYGDD-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  ++  EP+TVV+S +GW+R  K H +D + L +K GD  
Sbjct: 482 ---RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGF 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K A    +    +L+ + G++Y+L A +L S RG GE +   +            + +  
Sbjct: 538 KAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATFECVLLPEDE 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              +V S  G  F+V+  ++ A  + GK  L + +  K+   + V     D +A V    
Sbjct: 598 ALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RSYN 720
           +LL+F +  +P++ +GKG ++        + ++  ++D+    I EG T +  AG R+ +
Sbjct: 658 RLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--ISEGSTLVLQAGKRTLS 715

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
              +DL  + G+RG  GS +P+GF R
Sbjct: 716 LKPDDLEHYKGERGRRGSKLPRGFQR 741


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/727 (37%), Positives = 446/727 (61%), Gaps = 19/727 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSAR VG+V+GK 
Sbjct: 15  EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA M++ A+++L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + 
Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA +  +   + +
Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+  K   L+ D
Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ RR  +R+  I
Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+++LR L KLE
Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E ++ +E D L AE+  I   LN+ +     +      + E+ + +   G  R +   V 
Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+ ++L+   +I  EPIT ++S  GWIR+ K H  D + ++++ GD+        +T+R
Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619
           ++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T     +L+ SS
Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G  FI + + +    + GK+ + ++    + +VV    D  VAV   N  LLIF+ D++
Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665

Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           P++++GKG +L + K G  I+ +      + L  I +  R+   + ND+  ++  R   G
Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724

Query: 738 SLVPKGF 744
           + +PKGF
Sbjct: 725 NPLPKGF 731


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 DHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
              ++PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/699 (40%), Positives = 422/699 (60%), Gaps = 32/699 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+DE+I IIR  D+PK  ++
Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F LTE Q + IL +RLR L +LE+ +I+ EL++L  EK K++ LL       N+ A +
Sbjct: 439 SAFGLTERQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NESAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T   + +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656
              ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ +   +     + V  
Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               VA +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKALSGGGRGVTLMALDD 708


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/691 (39%), Positives = 419/691 (60%), Gaps = 32/691 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+GL   A   KSAR+VG+VIGK 
Sbjct: 28  EGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVVGDVIGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+  + EP   P++ P LL NG SGIAVG+AT IPSHN++E+  A +A+
Sbjct: 148 IDQGTVDFMPNYDGVEQEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREVAAATVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP+I+   L++++ GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W
Sbjct: 208 IRNPKIAHADLMQHMPGPDFPGGGQIISSEAEIAAAYESGRGSLKVRARWKIEDLARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLSLLDAVRDESGKD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I YLNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL +RLR L +LE+ +I+ EL +L  EK K++ LL S      + A +   +KEI 
Sbjct: 448 QADDILEIRLRQLARLEKIKIEKELADLRDEKAKLEELLAS------ESAMKRLLIKEIE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +  +  +AT +  +I+ EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 502 ADAKQYGDERRTLIQQEK--RATYEARVID-EPVTVVVSQKGWVRALKGHGLDTAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++   +L  GRG G  +  LI+L     ++  +
Sbjct: 559 AGDGLYAAFPCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGSHLMHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
              +   LL+ SS G  FI +  ++++  + GK+F+ + +       + +  D   VA +
Sbjct: 619 AAAADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDASQVACL 678

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               +LL+F ID++  +S  G+GV L +  D
Sbjct: 679 SSTGRLLVFGIDEMKTLSGGGRGVTLMALDD 709


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/731 (37%), Positives = 439/731 (60%), Gaps = 19/731 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPE + EKL EYI  PD PT   I+   E +++    GRG +R+RA + +++     
Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIDKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ +IAK++PL+ D+RDES      R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQNPTRLVIVLRSNRVDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + + Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDDIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E + L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRREQEELEAKAAIIREQLANPESLKNLIINELKEDAKKFGDD-----RRSPI--VT 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RAD   + +Q ++  E +TVV+S  GW+R+ K   VD + L+++ GD         T  R
Sbjct: 487 RADAVQIKEQDLMPAETVTVVLSEAGWVRAAKGGDVDAANLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  +L S RG GE +   +        +  F+ D   +LL VSS G 
Sbjct: 547 VYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVFIEDDASELLAVSSNGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  + +++  N + GK+FL V+ +   + L+      HVA++    +LLI  + ++P +
Sbjct: 607 GFKTQAAQLDTNAKAGKSFLTVADKATALPLLPIQQATHVAILSSAGRLLIVDLTELPVL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           ++GKG +L Q  +   I  +    + E +  + +  +      +DL  ++GKR   G L+
Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLNLDE-IIQVAAGQQHLKLKGDDLQKYIGKRATKGQLL 725

Query: 741 PKGFPRSGKFL 751
           P+G+ ++ + L
Sbjct: 726 PRGYQKANRLL 736


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/662 (39%), Positives = 413/662 (62%), Gaps = 16/662 (2%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR VG+V+GK HPHG  + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AE++L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSRYAEILLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP   P++ PN+L NGT+GIAVGMAT IP HN +E+  A +AL+DNP+ S
Sbjct: 121 YVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ LL +I GPDFPT   I+  R+ I + YR GRG  R+RA W  EE       IV++ +
Sbjct: 181 LDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEESE-----IVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+Q   ++++E+IA  + A+   +++D+RDES  +   R+V+ P++  +D D LM  +F 
Sbjct: 236 PHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL++RRE + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q +AIL L+LR L +LEE +I+ E 
Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQAEAILELKLRHLARLEEVKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++ +LL S ++    I  EI    E +  +     RR+   E S A +A  +
Sbjct: 416 DALAQERDRLQTLLASERKLGTLIKEEIMADAETYGDA-----RRSPLQERSEA-RAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
              +  EP+T+V+S  GW+RS K H +D S L++K GD+ + A    +   ++ + + G+
Sbjct: 470 HDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   S++
Sbjct: 530 SYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  L +    K+   +++ GD   +  + E  ++L+F +  +P++S+GKG ++
Sbjct: 590 VACNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKI 649

Query: 690 QS 691
            S
Sbjct: 650 VS 651


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/753 (36%), Positives = 450/753 (59%), Gaps = 29/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GLD  +  KK
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIAVGMAT +P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y  G+G  R+R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309
           A + VE+       I+VT +P+QV  ++++E+IA L+ AK  ++P + D+RDES  +   
Sbjct: 250 AVYHVED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P N  +D ++LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L EWLA R 
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRNLLVEWLAFRV 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++RF L+E Q D
Sbjct: 365 QTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIARFELSEIQAD 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ +  E +   
Sbjct: 425 YILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDD 484

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   + + A KA  +  ++  E ITVV+S +GW+RS K H +D + L +K GD
Sbjct: 485 -----RRSPIVQRAEA-KALTETELLPNEKITVVLSEKGWVRSAKGHDIDATGLSYKAGD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K A    +    + + + G++Y++PA  L S RG GE +   +      +     + D
Sbjct: 539 GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGANFECVLLPD 598

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGE 666
                ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     + +A V  
Sbjct: 599 DDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTT 658

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718
             +LL+F I  +P++ +GKG ++        + ++  ++D+    I EG T +  AG R+
Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGATLVLQAGKRT 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 717 LSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/761 (36%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA +  E+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRFED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   P V  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     ++ S  G  F+V+  ++ A  + GK  L + +   +   + V  V  
Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    +  G T 
Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/761 (36%), Positives = 455/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNLRALLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ P+  ++ RF+
Sbjct: 356 EWLEFRVTTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPRAKLIERFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LLNS  +    +  E+ + 
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLNSEAKLKKLVRTELLQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+T+V+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTIVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
                + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+   + V     
Sbjct: 589 FECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+      +G T 
Sbjct: 649 NWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAVLP--DGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/753 (36%), Positives = 448/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL+ +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +C EE G     IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYC-EEQGD----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPLLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGDD-----RRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDLDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L      
Sbjct: 530 LNYRAGDGYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++   V  D
Sbjct: 590 EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
           +   +    ++L+F +  +P++ +GKG ++ S     +        +   + +G +    
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/742 (37%), Positives = 443/742 (59%), Gaps = 24/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+ +++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP  +++ LL  + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRGSVKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV+T +P+Q   S++ ++IA+ + AK++P++EDIRDE+ ++  VR+
Sbjct: 247 AVWKKED-----GEIVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQENPVRL 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQFRRAT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK V+++RF L++ Q +AI
Sbjct: 362 VTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTVLMARFKLSDEQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE ++K+E   L  E++ ++ +L+S ++    I  EI++  + ++ +  
Sbjct: 422 LNLRLRHLAKLEETELKAEKARLEEERQHLEQILSSERRLNTLIKKEIQQDAKTYAST-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  +  M+  EP+TV++S  GW+R  K H +D+  L++K GD  
Sbjct: 480 ---RRSPLVEREEA-KAISETEMMPAEPVTVILSEMGWVRCAKGHDIDVQNLNYKAGDKY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +    + + + G++Y +   +L S R  GE +   ++L     +    + +  
Sbjct: 536 LAHAYGKSNQPAVFIDSSGRSYAVDPLSLPSARSQGEPLTGKLNLPAGASMEQVLIENEN 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
             LL+ S  G  FI +  ++IA  + GK  L +    K+   K++   T   +A+    R
Sbjct: 596 QPLLMASDAGYGFICQFEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTALLLALTHAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYK--DGGISDVICFK---ICEGLTWIDSAG-RSYNRS 722
            +L+F + ++P +S+GKG ++      D  +      K   I E  + +  +G R     
Sbjct: 656 -MLMFPVQELPSLSKGKGNKIIGIPAADAKVRSDFVVKLLLISENASLVFHSGKRKITLK 714

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
             DL  +  +RG  GS +P+G 
Sbjct: 715 PEDLQKFRAERGRRGSKLPRGL 736


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 440/743 (59%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 AIWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISENDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE----- 723
            +LIF    +P +S+GKG ++ +       D     + + L   D A   ++  +     
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSEL-LTKLLLISDQASLEFHSGKRKIVL 713

Query: 724 --NDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRAT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/743 (37%), Positives = 446/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ L+DNP   +++L+ ++ GPD+PT   I+     + + Y  GRG  R+R
Sbjct: 187 HNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AIWHKE-----NGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL  RR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLN+DE+I IIRNE+ PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENPKAELMSRFDLSVIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+SE D L  E++ +D LL S ++    I  EI+   E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRSEQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKYGDD-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K GD+ 
Sbjct: 480 ---RRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    + D  
Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V  + K+   + +  +  D + V+    
Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++          ++  +S +I     E +T I +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +DL  + G+RG  G+++P+G 
Sbjct: 715 KASDLDNFRGERGRRGTMLPRGL 737


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 442/745 (59%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  ++R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I       KEI + +  
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIK------KEILADAEK 475

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ +I  E ITVV+S +GWIR  K H VD S L++K GDS
Sbjct: 476 YGDERRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSTLNYKSGDS 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                   +    + L +DG++Y L + +L S R  GE I   ++L    +I    + + 
Sbjct: 535 YLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNIRQVLMAED 594

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
               L+ S  G  FI + +++++  + GK  L V     +   + V  +  D +  +   
Sbjct: 595 DQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNE 654

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF-KICEGLTWID--SAGRSYNR 721
            ++L+F I  +P++ +GKG   + + S +     + + +  +    T +   +  R    
Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISADTHVTLYAGKRKLGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
             +DL  + G+RG  G+++P+G  R
Sbjct: 715 KPSDLDNFRGERGRRGAMLPRGLQR 739


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y ++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 292/754 (38%), Positives = 431/754 (57%), Gaps = 42/754 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI++AM EMGL   A   KSAR+VG+V+GK 
Sbjct: 25  ERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAMHEMGLAADAKPVKSARVVGDVLGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y++LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 85  HPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 144

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+    EP   P + P +L NG SGIAVGMAT +P HN++E+ +AA+ L
Sbjct: 145 IDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGASGIAVGMATEVPPHNLREVAQAAIEL 204

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP +    L+E I GPDFP GG I+ S   I  +Y  GRG  +VRARW +EE+ RG W
Sbjct: 205 IRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAAAYESGRGSLKVRARWKIEELARGQW 264

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308
            +V+TE+P      +++E+I EL   K                   + LL+ +RDES +D
Sbjct: 265 QLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTLTPEQLQTKQSLLALLDAVRDESGKD 324

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+VL PK+  +DP   + ++   + +E+  P+N+ ++     P+   L  IL+EW+ 
Sbjct: 325 SPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPINLVMIGADGRPRQKGLGEILREWIG 384

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R   + RR+ FR+  +  R+ IL+G +I +LN+DE+I IIR  D+PK  +++ F L++ 
Sbjct: 385 YRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALIAAFGLSQR 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL +RLR L +LE+ +I+ EL  L  EK +++ LL S       +A +   +KEI 
Sbjct: 445 QADDILEIRLRQLARLEKIKIEKELGELRDEKARLEQLLGS------DVAMKRLIIKEIE 498

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +    DK    +A +  EP+TVV+S RGW+R+LK H +D S   FK
Sbjct: 499 ADAKQFGDARRTLIQ---QDKRATFEARVVDEPVTVVVSQRGWVRTLKGHGLDASGFTFK 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDSL  A    T D ++   ++G+ Y++P   L  GRG G  +  LI+L     ++  F
Sbjct: 556 AGDSLYAAFQCRTPDTLIAWGSNGRVYSVPVAALPGGRGDGVPVTSLIELEAGTHLMHYF 615

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
                  LL+ SS G  FI    ++I+  + GK+F+ + +  +    + +  D   VA +
Sbjct: 616 AAPLEQPLLLASSNGFGFIARIGDMISRVKAGKSFMTIDAGAQPLAPMPMWPDASQVACL 675

Query: 665 G----ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                +  +LL+F +D++  +S  G+GV L    DG    +    I +    +  AGR  
Sbjct: 676 ALGAKDETRLLVFGLDEMKTLSSGGRGVTLIGL-DGNEQLLQALAIGQAGLLLSGAGRGG 734

Query: 720 NRSENDLLG-----WLGKRGGVGSLVPKGFPRSG 748
              +  L+G     ++GKR   G      F  SG
Sbjct: 735 KPQQQRLVGDALAPYVGKRARRGKAPAVKFKVSG 768


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 25  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 85  HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 144

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 145 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 204

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 205 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 261

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 262 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 319

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 320 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 379

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 380 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 439

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 440 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD-----ERRSPI--VA 492

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 493 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 552

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 553 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 612

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 613 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 672

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 673 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 730

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 731 LPRGYQKANKLL 742


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 422/699 (60%), Gaps = 32/699 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+DE+I IIR  D+PK  ++
Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K++ LL       N+ A +
Sbjct: 439 SAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NESAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T   + +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656
              ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ +   +     + V  
Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               VA +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 708


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 277/731 (37%), Positives = 437/731 (59%), Gaps = 19/731 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPE + EKL EYI  PD PT   I+   E +++    GRG +R+R+ + VE+     
Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYSVEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES      R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLRSNRVDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLTKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E + L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRREQEELEAKAAVIREQLANPESLKNLIITELKEDAKKFGDD-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD + L+++ GD         T  R
Sbjct: 487 RAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  +L S RG GE +   +        +   V D   +LLV SS G 
Sbjct: 547 VYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVLVEDDANELLVASSNGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  + +++  N + GK FL V  + K + L+      HVA++  + +LLI  + ++P +
Sbjct: 607 GFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           ++GKG +L Q  +   I  +    + E +  + +  +      +DL  +LGKR   G L+
Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLALDE-IIQVAAGQQHLKLKGDDLQKYLGKRATKGQLL 725

Query: 741 PKGFPRSGKFL 751
           P+G+ ++ +  
Sbjct: 726 PRGYQKANRLF 736


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|332851017|ref|ZP_08433152.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332865611|ref|ZP_08436444.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
 gi|332730300|gb|EGJ61624.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332735200|gb|EGJ66278.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
          Length = 739

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 271/749 (36%), Positives = 453/749 (60%), Gaps = 26/749 (3%)

Query: 9   SNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           SN ++  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+
Sbjct: 2   SNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLN 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G+++ D AA
Sbjct: 62  ATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           AYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAVGM
Sbjct: 121 AYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  GR
Sbjct: 181 ATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGR 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES  
Sbjct: 241 GSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDH 295

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 296 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHEILTEWL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L++
Sbjct: 356 SFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNLSD 415

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   + 
Sbjct: 416 IQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADAKT 475

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 476 FADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGLSY 529

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+ Y L   +L S R  GE +   I L     +   
Sbjct: 530 RAGDGYLAHTRGRSNQPVVFLDSTGRTYALDPTSLPSARSQGEPLTGKITLPEGATVEQV 589

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            +     K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       + 
Sbjct: 590 LMAAPETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDISLV 649

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSA 715
            +    ++L+F + ++P +S+GKG ++     Q+ K+    ++ ++  K  + L ++ S 
Sbjct: 650 AMSSAGRMLVFPLAELPILSKGKGNKIINISAQAAKERSELLARLLLIKANQSLVFV-SG 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 709 KRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 280/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GWIR+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I  L   G++Y LP  NL S RG GE +   +        +  ++ D   +L+  SS G 
Sbjct: 547 IYFLDETGRSYALPISNLPSARGLGEPLSSKLAPASGVAFIQVYLDDEESELIAASSSGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GK+FL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGHL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGD-----ERRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/753 (36%), Positives = 443/753 (58%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYS-EEQGD----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPILMQRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLELTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S A KA  ++ +I  E +TVV+S++GW R  K H +D   
Sbjct: 476 AEMYGDD-----RRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDAQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LSYRSGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD 659
               + + +  LL+ S  G  FI +  ++++  + GK  + V       K   V  V  D
Sbjct: 590 EHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R       DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPTDLEHYHGERGRRGNKLPRGLQR 742


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/745 (37%), Positives = 440/745 (59%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  ++R
Sbjct: 187 HNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E     +  IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I       KEI S +  
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIK------KEILSDAEK 475

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ +I  E ITVV+S++GWIR  K H VD + L +K GD+
Sbjct: 476 YGDERRSPLVEREEA-KALTERDLIPSEAITVVLSDKGWIRHAKGHEVDPTTLSYKSGDN 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                   +    + L +DG++Y L + +L S R  GE I   ++L    ++    + + 
Sbjct: 535 YLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAED 594

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
               L+ S  G  FI + +++++  + GK  L V     +   + V  +  D +  +   
Sbjct: 595 EQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNE 654

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGL---TWIDSAGRSYNR 721
            ++L+F I  +P++ +GKG   + + S +     + + +    G      + +  R    
Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARAKAREEFLSYLAVIGADTHVTLHAGKRKLCL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
              DL  + G+RG  GS++P+G  R
Sbjct: 715 KPADLDNFRGERGRRGSMLPRGLQR 739


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 DHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S K +  ++  +     E+ + +   G  R
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILES-KTKLKKLIKD-----ELTADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 484 LSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
              ++PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/727 (37%), Positives = 445/727 (61%), Gaps = 19/727 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSAR VG+V+GK 
Sbjct: 15  EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA RYTEA M++ A+++L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN+ E+ +  + 
Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKVCIR 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA +  +   + +
Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+  K   L+ D
Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ RR  +R+  I
Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+++LR L KLE
Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E ++ +E D L AE+  I   LN+ +     +      + E+ + +   G  R +   V 
Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+ ++L+   +I  EPIT ++S  GWIR+ K H  D + ++++ GD+        +T+R
Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619
           ++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T     +L+ SS
Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G  FI + + +    + GK+ + ++    + +VV    D  VAV   N  LLIF+ D++
Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665

Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           P++++GKG +L + K G  I+ +      + L  I +  R+   + ND+  ++  R   G
Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724

Query: 738 SLVPKGF 744
           + +PKGF
Sbjct: 725 NPLPKGF 731


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + VE+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRGSYRMRAVYSVEK----- 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 254 HEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++    + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/740 (37%), Positives = 444/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ S+++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E + L  E++++ ++L S ++    +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLHEREEA-KAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   +  + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEADDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  FI   +++++  R GK  + +     +   LVV+   D +  +    ++L+F
Sbjct: 596 LASDAGYGFICTFNDLVSRNRAGKAMISLPDNAHVMPPLVVENESDMLLAITSAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +PE+S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPELSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  GSL+ +G  R
Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y ++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKQED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|332874996|ref|ZP_08442843.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736806|gb|EGJ67786.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
          Length = 739

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 272/734 (37%), Positives = 439/734 (59%), Gaps = 28/734 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQAILASERKMNNLLKKELQADADAFGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GDS K + 
Sbjct: 477 RSPLHEREEA-KAMSEHDMQPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDRKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLV 740
               G+RG  GSL+
Sbjct: 715 QKVTGERGRRGSLM 728


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 421/699 (60%), Gaps = 32/699 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+DE+I IIR  D+PK  ++
Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K++ LL       N  A +
Sbjct: 439 SAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NDSAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T   + +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656
              ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ +   +     + V  
Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               VA +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 708


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/685 (37%), Positives = 428/685 (62%), Gaps = 16/685 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+ GRG  
Sbjct: 184 IPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q 
Sbjct: 359 RDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFGISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E  +L  E++++  +L S ++    +  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSDLEKERDQLQGILASERKMNTLLKKEIQADADAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D  AL +K G
Sbjct: 479 D-----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+   +    T   ++ + + G++Y L   +L S RG GE +   + L     +    + 
Sbjct: 533 DNWLSSAKGKTNQPVVFIDSTGRSYALDPVSLPSARGQGEPLTGKLTLPPGAVVEHMLMT 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +     +   L ++   D +  +  
Sbjct: 593 GEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITA 652

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691
             ++L+F +  +P++S+GKG ++ S
Sbjct: 653 AGRMLMFPVADLPQLSKGKGNKIIS 677


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 283/699 (40%), Positives = 419/699 (59%), Gaps = 32/699 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID++I IIR  D+PK  ++
Sbjct: 379 AILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIRESDEPKAALI 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F LT+ Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL       N  A +
Sbjct: 439 STFGLTDRQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NDSAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S RGW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQRGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +A  FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAAFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656
              ++  +   +   LL+ SS G  FI +  ++++  + GK F+ +   +     + V  
Sbjct: 610 GSHLMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLP 669

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 670 NATQVACLSSGGRLLVFGMDEMKTLSGGGRGVTLMALDD 708


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/757 (37%), Positives = 440/757 (58%), Gaps = 37/757 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L  + V++ +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   TALTHDVVESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G  D   S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNVQEI +A + LID P  S+++LLEY+ GPDFPT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNVQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  ++++E+IA  + +K++P++ED+RDES  +
Sbjct: 242 SIRMRAIWNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIIPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R + + RR ++R+  + RR+ IL+GLL A+LNID++I IIR ED  K V+++ FSL+E+
Sbjct: 357 YRCDTVRRRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKSVLITCFSLSES 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +++SE      E  ++  LL S K  +NQ+      +K+  
Sbjct: 417 QTEAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQMLLES-KAAFNQL------LKKEI 469

Query: 487 SKSTDLGRRRTTFCE----VSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541
              T +   +   C     + R D   + +  I+  EP+TVV+S  GW+RS K H VD S
Sbjct: 470 QADTAVCHHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTVVLSKMGWVRSAKGHDVDPS 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             ++K GD  + A    +    + + + G++Y+L    L S RG GE +      +    
Sbjct: 530 GFNYKAGDCFRTAAQGKSNQPAVFIDSTGRSYSLDPLTLPSARGQGEPLTGRFISSTEAV 589

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           I    + D+  +LL+ S  G  FI   S++I   R GK  + + S  K+   +K+ G D 
Sbjct: 590 IEYVLMADNDQQLLLSSDAGYGFICHFSDLITKNRAGKALMALPSNAKILPPLKLHGADD 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI-------- 712
           + +     ++L+F    +P +++GKG ++ S     IS        + L W+        
Sbjct: 650 MLLSITAGRILMFPAADLPRLTKGKGNKIIS-----ISKQERMAGSDNLRWLLRLSVQAS 704

Query: 713 ---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               S  R       +L  +  KRG  GSL+P+G  R
Sbjct: 705 VTFYSGKRKLTLKPEELKKFSAKRGSKGSLLPRGLTR 741


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+E+I S+L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKEREQILSILGSKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T  +  L +DG+AY+     L S RG+GE +                  ++  + ++
Sbjct: 544 SRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASFQVLASGENNARFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V     D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAI 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
           +   +PE+ +GKG   + +   K G    V    +  G T  + S  R  + S  DL  +
Sbjct: 664 TASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSGARVMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K + 
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLV 740
               G+RG  GSL+
Sbjct: 715 QKVTGERGRRGSLM 728


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K + 
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLV 740
               G+RG  GSL+
Sbjct: 715 QKVTGERGRRGSLM 728


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMSNLLKKELQADADAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +    ++   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENARVMQPVVIEDETDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAAKGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/745 (36%), Positives = 445/745 (59%), Gaps = 23/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+ +A +AL+D P +S++ ++ Y+  PDFPT   I+ SRE I + Y+ GRG  
Sbjct: 184 IPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +  
Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ +R
Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGLVDILNEWIVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PKPV++SRF+L++ Q 
Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPVLMSRFNLSDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L+ E++++ S+L S ++    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELIKERDELQSILGSERKLNTLIKKEIQADAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EPITVV+S  GW+RS K H ++ S L++K G
Sbjct: 479 E-----RRSPLREREEA-KALSEHEILPSEPITVVLSEMGWVRSAKGHDIEPSNLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A    T   ++ L T G++Y++    L S R  GE +   + L     +    + 
Sbjct: 533 DSFKGAARGKTNQPVVFLDTTGRSYSVDPLELPSARSQGEPLTGRLSLPPGATVEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
               K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  + 
Sbjct: 593 QDEQKYLMASDAGYGFICTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKI---CEGLTWIDSAGRSY 719
           +  ++L+F +  +P++S+GKG   + +   +     D++ + +    +    +    R  
Sbjct: 653 KAGRMLMFPVADLPQLSKGKGNKIINITGAQAASGEDLLVWLLVLPAQASITLYFGKRKL 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
                +L  +  +RG  G+ +P+G 
Sbjct: 713 RLKSEELQKYRAERGRRGTSLPRGL 737


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/688 (39%), Positives = 404/688 (58%), Gaps = 31/688 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+
Sbjct: 21  ALTLGLYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARV 80

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T 
Sbjct: 81  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 140

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A L+L+ +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E
Sbjct: 141 IARLLLEELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLRE 200

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +ALI NP++  E LL  I GPDF  GG I+     I   Y  GRG  + RARW  
Sbjct: 201 VAQACVALIRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQF 260

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           EE+ RG W +VV E+P      +++E+I EL   K                   + LL+ 
Sbjct: 261 EEMARGQWQLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDA 320

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK   +D D  +  +   + ME   P+N+  +     P+   L 
Sbjct: 321 VRDESGKDAAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLR 380

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L EWLA R E + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR+ D+PKP ++
Sbjct: 381 SVLDEWLAFRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPALM 440

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+LTE Q + IL +RLR L +LE ++I+ EL +   E+ ++  LL+      N  + +
Sbjct: 441 DRFALTERQAEDILEMRLRQLARLEGFKIEQELADKREEQSRLQDLLD------NPGSLK 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  E   A++A L+  +++ EP+TVV+S  GW+R+ + H  
Sbjct: 495 RLLIKEIEADAKQHGDERRTLIE--SAERAVLETKVLD-EPVTVVVSRNGWLRARQGHGH 551

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK+GD L  A    TTD ++ +  +G+ YT+    L S RG G+ +  +IDL  
Sbjct: 552 DAAQFTFKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAVSALPSARGDGQPVTTMIDLEA 611

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV      +  + L+ +     F    S++ +  R GK F+ +   + +   V +  
Sbjct: 612 GTRIVHTIAAAADSRWLLATQSAYGFATRLSDMSSRQRAGKQFVTLDKGDVLLRPVPLFE 671

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
               +A++    KLL+F +D++  +S G
Sbjct: 672 GAVQLALLSSKAKLLVFGLDELKSLSGG 699


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/724 (36%), Positives = 438/724 (60%), Gaps = 25/724 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +
Sbjct: 181 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F 
Sbjct: 236 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +
Sbjct: 416 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G+
Sbjct: 470 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y +    L S RG GE +   + L     +    +     KLL+ S  G  F+   +++
Sbjct: 530 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 589

Query: 632 IANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  + +     +   +V++   D +  + +  ++L+F +  +P++S+GKG ++
Sbjct: 590 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 649

Query: 690 -------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +  + G++ +        LT I    R       +L    G+RG  G+L+ +
Sbjct: 650 INIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-R 707

Query: 743 GFPR 746
           G  R
Sbjct: 708 GLQR 711


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPPLMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K + 
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLV 740
               G+RG  GSL+
Sbjct: 715 QKVTGERGRRGSLM 728


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/756 (36%), Positives = 445/756 (58%), Gaps = 27/756 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + +L   + + + L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 6   TPSLFANSGEQLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSA 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S A
Sbjct: 66  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++ A+L+L  + +  VD+   ++    EP V P++ PN+L NG SGIAVGM
Sbjct: 126 AMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGGSGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+     + + Y  G+
Sbjct: 186 ATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELRKVYETGQ 245

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R RAR+      R    IVVT +P+QV  ++L+E+IA  I AK++P++ED+RDES  
Sbjct: 246 GSIRARARYE-----REGDDIVVTALPHQVSGAKLLEQIASQIRAKKLPMVEDLRDESDH 300

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   R+V+ P++  +D + LM  +F  +D+E  + +NMNV+ +   PQV  L G+L EWL
Sbjct: 301 EHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDLAGLLGEWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             R E + RR  +R++ +  R+ +L+GLLIAYLNIDE+IAIIR  D+PKP ++SRF L++
Sbjct: 361 EFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQPKPELMSRFGLSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL L+LR L KLEE +I+ E D L  E+++++  L S ++   Q+       +EI
Sbjct: 421 IQAEAILELKLRHLAKLEEMKIRGEQDELATERDQLEKTLGSERRLRTQVR------REI 474

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
              + D G  R +      A +A  + A++  EP+TVV+S +GW R+ K H VD   L++
Sbjct: 475 EKDAADYGDERRSPLVQRAAAQALDESALVPTEPLTVVLSEKGWARAAKGHDVDARGLNY 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+ + A+   +   +  + + G+ YT+ A  L S RG GE +   ++       V  
Sbjct: 535 KAGDAFQAAVTGRSNQPVAFIDSTGRTYTIAAHTLPSARGQGEPLSGRVNPPEGARFVGM 594

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
                  + L+ +  G  F+ +  +++   + GK  L V +   +     V     DH+A
Sbjct: 595 ATGAEEDRWLLGTDHGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHIA 654

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSA 715
           VV     LL+F   ++PE++RGKG +L      + KDG   + DV      +  T +  A
Sbjct: 655 VVTTRGYLLLFPATELPELARGKGNKLIGIPSAALKDGSERVLDVAVLGPQD--TLVVHA 712

Query: 716 GRSYNR-SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G+ +      +   ++G+R   G  +P+G+  + + 
Sbjct: 713 GKRFKALVPAEWAEYVGERARRGRQLPRGYQNANRL 748


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/753 (36%), Positives = 445/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL  +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTQEQ-----GDIVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNLLTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+   L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLQQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            EI+        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEIYGDD-----RRSPVVERLEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L+   + 
Sbjct: 530 LSYRAGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLSAGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++   V  D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
           +   +    ++L+F +  +P++ +GKG ++ S     +        +   + EG +    
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPEGSSVTLH 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYYGERGRRGNKLPRGLQR 742


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/750 (37%), Positives = 451/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLERLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++++GKG   + + + K     +V+     + +G +    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/740 (36%), Positives = 443/740 (59%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ S++ LL+ + GPD+PT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L +LEE +I+ E + L  E++++ ++L S ++    +  E++   + F        R
Sbjct: 422 LRHLARLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKSGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   +  + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEADDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  FI   +++++  R GK  + +     +   L+++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLIIENESDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +PE+S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPELSKGKGNKIISIPSAEAAKGVDGLAHLFLLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  GSL+ +G  R
Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 AIWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILESERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/760 (36%), Positives = 443/760 (58%), Gaps = 37/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 13  LANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAK 72

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G+ D   S AA R
Sbjct: 73  AKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 133 YTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTGIAVGMATD 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +   Y  GRG +
Sbjct: 193 IPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAMYETGRGSY 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA + ++   +    +++  +PYQV  +++ E+IA+L+  K++P + DI DES  +  
Sbjct: 253 KMRATFHIDPKEKN--LVIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIHDESDHENA 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIVL  ++  +D D +M  +F  +D+E+ + +NMN++ +   PQV  L  IL+EWL  R
Sbjct: 311 CRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCR 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++  + LT+ Q 
Sbjct: 371 RSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTDIQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL++RLR L KLEE +++ E D L AE+  I   L+      N  +     + E+ + 
Sbjct: 431 NAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLD------NPDSLTTLMIDELTAD 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G  R +        +A  +  ++  EPIT V+S  GWIR+ K H VD + + ++ G
Sbjct: 485 MKEHGNERVSPLAEREEAQALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAAGMSYRSG 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ +  +   + ++I +L + G++Y++ A +L S RG G+ +  ++              
Sbjct: 545 DAYQAHVRGKSNEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQLLTG 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM----------KLVVKV-- 656
               ++++ SS+G  FI     + +N + GK  + +++  ++           L+V    
Sbjct: 605 ADDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVSAEN 664

Query: 657 ----------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-I 705
                     T DH+AVV     LLIF++D +PE +RGKG ++ + K  G  +V+    +
Sbjct: 665 NGISDTENSSTPDHIAVVTNAGYLLIFALDDLPEQARGKGNKMITLK--GDEEVLTITPL 722

Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            +  + I +AG R       DL  +  KRG  G  +P+GF
Sbjct: 723 SKQDSLIITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGF 762


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GWIR+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I  L   G++Y LP  +L S RG GE +   +        +  ++ D   +L+  SS G 
Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVAFIQVYLDDEESELIAASSSGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GK+FL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGHL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/716 (37%), Positives = 434/716 (60%), Gaps = 38/716 (5%)

Query: 26   LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
              E Y +Y L  + +RAIPD+RDG KPVHRRI++AM  + L      KKSAR+VG+VIGK
Sbjct: 690  FRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVGDVIGK 749

Query: 86   LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
             HPHGD +VY ++VR+AQP+V RYPLI GQGNFG+IDGDSAAA RYTEARMT +AE IL 
Sbjct: 750  YHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIAEAILS 809

Query: 146  GVDEDAVD-FRDTYNEEDSEPVVFPSKFPNLLANGTSG-IAVGMATSIPSHNVQEICEAA 203
            G  +D +  ++  Y+++D EP+V P+ FP ++ N ++G  AVG  T IPSHN+ E+  A 
Sbjct: 810  GDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTELLGAC 869

Query: 204  LAL---------IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            +AL         +++P      + ++I  PDFP GGII  + E +   Y  G G   +R+
Sbjct: 870  IALAKKRGRTGAMESP-TDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKMLLRS 928

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLI----EKIAELIIA--KRIPLLEDIRDE-SAE 307
            +W VE + +G W IVVTEIPY ++KS L+     +I++  IA  +++P+++D+RDE SAE
Sbjct: 929  KWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDESSAE 988

Query: 308  D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG---------RVPQVMPL 357
            D +RIVLFPK+R+LDP+ +M  +F  ++++         L            R+P + PL
Sbjct: 989  DGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPSLFPL 1048

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            D +++ +L +R+E++  R+  R+  I  R+ IL GLL+AY NI EI+ II + D+P+P++
Sbjct: 1049 DKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEIILDNDEPRPII 1108

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            + ++SLTE Q DAIL +RL  LRKLE+ +++ E D L  E   +  +L+    +W  I  
Sbjct: 1109 MEKYSLTEIQTDAILAIRLSQLRKLEQMKLQGEHDRLSEEAAGLHQVLDDDAHRWKHITG 1168

Query: 478  EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            E+R+  + F        RRT     +   +   ++ ++ +EP+T ++S +GW++ ++  S
Sbjct: 1169 ELRDALKKFGD-----ERRTIVDPDAPKSRPMSREQIVSREPVTAILSKQGWLKGMRGSS 1223

Query: 538  VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            +D+S++ F+E D L  +   HTTD+++L+   G+A+++ A +L SGRG+GE +      +
Sbjct: 1224 IDVSSVRFRESDKLLDSAAGHTTDQLILIGRTGRAFSMLAADLPSGRGNGEPVSKHFVFS 1283

Query: 598  HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
             N+      +     + LV ++ G+AF    S++++  +KGK F+   +  ++  + ++ 
Sbjct: 1284 INEAPTRMVMVKPDAEYLVATTAGHAFRAMGSDMVSANKKGKAFINFPASSRLLCIREIE 1343

Query: 658  GDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG--GISDVICFKICEGL 709
              H   A +    ++ +   D+ P + +GKG+   + K G  G+ D     + EG+
Sbjct: 1344 AAHDAFAFIDSYGRMAVILKDEFPLLGKGKGLTAVAMKKGSKGLRDAAPITLKEGI 1399


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/753 (36%), Positives = 448/753 (59%), Gaps = 29/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GLD  +  KK
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIAVGMAT +P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y  GRG  R+R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309
           A + VE+       I+VT +P+QV  ++++E+IA ++ AK  + P + D+RDES  +   
Sbjct: 250 AVYHVED-----GDIIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPC 304

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P N  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L EWL  R 
Sbjct: 305 RIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRV 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  +++RF+L+E Q D
Sbjct: 365 KTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKASLIARFALSEIQAD 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+ RLR L +LEE ++++E D LL E+ K+ +LL S  +    +  E+ +  E +   
Sbjct: 425 YILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLGSEAKLKKLVRTELLKDAETYGDD 484

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E + A KA  +  ++  E +TVV+S +GW+RS K H +D + L +K GD
Sbjct: 485 -----RRSPIVERAEA-KALSEHDLLPNEKVTVVLSEKGWVRSAKGHDIDATGLSYKAGD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K      +    + + + G++Y++PA  L S RG GE +   +            + D
Sbjct: 539 GFKALAAGRSNQFAVFVDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGATFECVLMPD 598

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGE 666
                ++ S  G  F+V+  ++ A  + GK  L + +  K+   + V     + +A V  
Sbjct: 599 DDGLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRESNWLASVTT 658

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718
             +LL+F I  +P++ +GKG ++        + ++  ++D+    + EG T +  AG R+
Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEGATLVLQAGKRT 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 717 LSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 440/740 (59%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA+ LI+ P+ S+++LL+ + GPD+PT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWN 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++K+ ++L S ++    +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDKLQAILASERKMNTLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A +A  +  M   EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLHEREEA-RAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   +  + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  FI   +++++  R GK  + +     +   LV++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLVIENDSDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P +S+GKG ++        +  + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPALSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
              +G+RG  GSL+ +G  R
Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/676 (37%), Positives = 424/676 (62%), Gaps = 20/676 (2%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   E +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADAEAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    + +   KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMENDDRKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL 689
            +  +P++S+GKG ++
Sbjct: 656 PVSDLPQLSKGKGNKI 671


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 280/754 (37%), Positives = 447/754 (59%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+++I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  EE G     IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWS-EEDGD----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  FR+  +  R+ IL+GLLIAYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +TE Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S +++ N +       
Sbjct: 416 ITETQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGS-ERRLNTLL-----K 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KE+ + +   G  RRT   E + A  A  ++ +I  EP+TV++S++GW+R+ K H VD++
Sbjct: 470 KELLADAEKYGDDRRTPLVERATA-VALTEKELIPSEPVTVILSDKGWVRAAKGHDVDVA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GDS        +  + + LST G+ Y L +  L S R  GE +     L   ++
Sbjct: 529 GLSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLPSARSQGEPLTGRFALGAGEE 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
           +    + +     L+ S  G  F+    ++I   + GK  L V    ++    K+     
Sbjct: 589 VRHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPET 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWID 713
           D    +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +   
Sbjct: 649 DLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTL 708

Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 FAGKRKLTLKPSDLDYYRGERGRRGAKLPRGLQR 742


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/750 (36%), Positives = 443/750 (59%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEE-----GDIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E + A KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGDD-----RRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++   + V  +  D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + + +     + +     + +G T    AG 
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQR 740


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/750 (36%), Positives = 443/750 (59%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEE-----GDIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E + A KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGDD-----RRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++   + V  +  D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + + +     + +     + +G T    AG 
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQR 740


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D   
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           +EI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 REIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D   
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEESLAG 741


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+
Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GDS K + 
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   LV++   + +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESNMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++ S           G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAASGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLV 740
               G+RG  GSL+
Sbjct: 715 QKVTGERGRRGSLM 728


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RY LI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ +I ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRG-AAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T ++  L ++G+AY+     L S RG+GE +                  D+  + ++
Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V+    D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
              ++PE+ +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  +
Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/745 (36%), Positives = 443/745 (59%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 10  DGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSATAKYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +  VD++  ++    EP   P++ P++L NG +GIAVGMAT IP 
Sbjct: 130 SRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIAVGMATDIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LI+NP+  +  LLE++ GPD+PT   I+  +  I + Y+ GRG  R+R
Sbjct: 190 HNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQTGRGSIRMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + VE+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDES  +  VR+
Sbjct: 250 AVYDVEQ-----GDIVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDESDHENPVRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +N+N++ +   P V  L  IL EWL +RRE 
Sbjct: 305 VIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNLLVILSEWLEYRRET 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL GLL+AYLNIDE+I IIR  D PK  ++SRF+L++ Q  +I
Sbjct: 365 VRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDPKAELMSRFALSDTQAHSI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I++E D L  E++ ++ +LNS  +    +  EI    E +     
Sbjct: 425 LEIKLRQLAKLEEIKIRAEQDELRIEQDYLEKILNSKARMSTLMKKEILAAAEQYGDD-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E S + KA  ++ ++  E +TVV+S++GW R  K H +D ++L +K GD  
Sbjct: 483 ---RRSQLVERSES-KALTEKDLVPSEAVTVVVSDKGWARCAKGHDIDPTSLSYKAGDGY 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A    +   ++ + +DG+A+T  A  L + R  GE +    +L+  +  V + + D  
Sbjct: 539 LCASKGRSNRPVVFIGSDGRAFTTDAHTLPTARSQGEPLTGRFNLSTGKTFVHSIMSDDD 598

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            + L+VS  G  F+    ++++  + GK  + +    K+   + +  +  D+   +    
Sbjct: 599 AQYLLVSDAGYGFVSSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIENDNCLTITSEG 658

Query: 669 KLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWIDSAG-RSYNR 721
           ++L+F +  +P +S+GKG ++      +S        ++C  I EG      AG R    
Sbjct: 659 RMLVFPVKNLPVLSKGKGNKIINIPSARSKLREEFVSLLCI-IPEGAAITLHAGKRKLTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
              D+  + G+RG  G+ +P+G  R
Sbjct: 718 KAADIEHYKGERGRRGNKLPRGLQR 742


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 274/741 (36%), Positives = 442/741 (59%), Gaps = 32/741 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+VIGK
Sbjct: 21  VEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASAKYKKSARTVGDVIGK 80

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
            HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTE+++++ A+ +L
Sbjct: 81  FHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTESKLSKYADALL 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             + +   ++R  ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+ E+  A L
Sbjct: 141 SELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMATDIPPHNLNEVVSACL 200

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            ++DNP+  + +L+E+I  PD+PT   I+ S++ I   Y  GRG  ++RA W  E+    
Sbjct: 201 HMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRGSIKMRAIWHRED---- 256

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDP 322
              I+VT +P+Q   S+++E+IA  +  K++P++ED+RDES  +   R+V+ P++  +D 
Sbjct: 257 -GDIIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHENPTRLVITPRSNRVDV 315

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D LM+ +F   D+E  + +N+N++ +   P VM L  I+K+WL  R +V  RR S+R++ 
Sbjct: 316 DALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIKDWLLFRTDVTRRRLSYRLEK 375

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           +D+R+ +L GLLIA+LNIDE+I +IR ED+PKP +++RF L++ Q + IL+ +LR L +L
Sbjct: 376 VDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPALIARFGLSDIQAEYILDTKLRQLARL 435

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           EE++I++E D L  EK +++ +L S  +    +  E++   E F        RR+    V
Sbjct: 436 EEFKIRAEQDELAKEKAELELILGSETRLKTLVKKELKAAAEEFGDE-----RRSPL--V 488

Query: 503 SRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
           +R + +   ++ ++  EPITVV+S++GWIR  K H +D + L +K GD    A    +  
Sbjct: 489 ARGEASAFNEKDLLTAEPITVVLSDKGWIRGAKGHDIDPTTLSYKSGDKFLSAACGRSNQ 548

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            + L  + G+ Y L    L S RG GE     +++          +     K+L+ +  G
Sbjct: 549 NVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALFTDVIMGADDQKVLLGTDAG 608

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQI 678
             FI +  ++    R GK  + +    K+ L  K+  D    +A V    +LL+F I ++
Sbjct: 609 YGFIGKIGDLYTKNRAGKAVVSLPKGAKI-LSPKMVNDANALIAAVSNEGRLLVFPIAEL 667

Query: 679 PEMSRGK--------GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGW 729
           PE++RGK        G RLQ+ ++  I   +   I EG + +  +G+ Y      DL  +
Sbjct: 668 PELARGKGNKIINIPGSRLQAREEFVIDYGV---ISEGDSLVVHSGKRYLVMKAKDLEHY 724

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
            G+RG  G  +P+GF +  K 
Sbjct: 725 SGERGRRGHKLPRGFQKVDKL 745


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 282/747 (37%), Positives = 442/747 (59%), Gaps = 27/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT +EE     SL    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   
Sbjct: 2   NTDIEER----SLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSAS 57

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA
Sbjct: 58  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPDDPKSFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   AEL+L  + +  V++   ++    E  + P++ P++L NG +GIAVGMA
Sbjct: 118 MRYTEARLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  A L L++ P+ ++ +L + + GPD+PT   I+     +++ Y+ G G
Sbjct: 178 TDIPPHNLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHG 237

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA + +E   +G   IV+  +PYQV  +R++E+IA+ + AK++P+L D+RDES  +
Sbjct: 238 SVRMRACYTLE---KGD--IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHE 292

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P+ R ++ + +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL 
Sbjct: 293 NPTRLVLVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLH 352

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E++ RR   R++ +  R++IL GLLIAYLNIDE+IAIIR E++PKPV+++RF L++ 
Sbjct: 353 FRIEIIRRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPVLMARFELSDR 412

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I++E   L AE+++++ +L S +Q    +  E+    E F
Sbjct: 413 QAEAILELKLRHLMRLEETKIRAEDKALAAERKRLEKILGSERQIKGLLRKELVADVEKF 472

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E   A  A  +QA++  EPITVV+S +GW+R+ KSH VD + L ++
Sbjct: 473 GDA-----RRSPIVERPSA-TALDEQALLPAEPITVVLSEKGWVRAAKSHEVDPTTLSYR 526

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  + +    +    + L + G++YTLPA  L S RG GE +   + +    + V   
Sbjct: 527 TGDGYRASARGRSNQPAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVVPGAEFVAVL 586

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + +     L+ S  G  F+ +   + A  R GK  L +S+  +    V V     + +A+
Sbjct: 587 LAEPEIFYLMASDAGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAI 646

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWIDSAGR 717
                +LL+F + ++P M+RGKGV+L      +S +       +      G   I +  R
Sbjct: 647 ATNTGRLLLFPLGELPIMTRGKGVKLIHIPSPRSAQRQEAVRALAVVPPGGALQIFAGRR 706

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  + G+R   G  +P+GF
Sbjct: 707 HLTLKSEDLEFYRGERARRGHTLPRGF 733


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/704 (39%), Positives = 423/704 (60%), Gaps = 36/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DTDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEISAAYETGRGSLKVRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+ +R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKS 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LTE Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLTERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFSFKAGDGLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  +      +LL+ SS G  F+ +  ++++  + GK+F+ + +       M 
Sbjct: 607 LESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           ++   T   VA +    +LL+F++D++  +S  G+GV L +  D
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFAMDEMKTLSGGGRGVTLMALDD 708


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 421/676 (62%), Gaps = 20/676 (2%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++E++L+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPALMSRFGITETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K + 
Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKSGDSWKASA 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDEQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  +    ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITAAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL 689
            +  +P++S+GKG ++
Sbjct: 656 PVSDLPQLSKGKGNKI 671


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S  KL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 199 LIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E D L A+   I   L + +   N I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD   L+++ GD         T  R
Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  NL S RG G+ +   +        +  ++ D   +L+  SS G 
Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GKTFL V  + K + L+      H+AV+    +LLI  + ++P +
Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739
           ++GKG +L Q      I  +    + E +  +  AG+ + + + +DL  ++GKR   G L
Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724

Query: 740 VPKGFPRSGKFL 751
           +P+G+ ++ K L
Sbjct: 725 LPRGYQKANKLL 736


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/731 (37%), Positives = 437/731 (59%), Gaps = 19/731 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPE + EKL EYI  PD PT   I+   E +++    GRG +R+R+ + VE+     
Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYTVEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES      R+V+  ++  +D +
Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLRSNRVDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLTKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E + L A+   I   L + +   + I  E++E  + F        RR+    V+
Sbjct: 434 EMEIRREQEELEAKAAVIREQLANPESLKSLIINELKEDAKKFGDD-----RRSPI--VA 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q ++  E +TVV+S  GW+R+ K   VD + L+++ GD         T  R
Sbjct: 487 RAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYRAGDQYLSHAVGKTNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +  L   G++Y LP  +L S RG GE +   +        +   V D   +LLV SS G 
Sbjct: 547 VYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVLVEDDANELLVASSNGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  + +++  N + GK FL V  + K + L+      HVA++  + +LLI  + ++P +
Sbjct: 607 GFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL 666

Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           ++GKG +L Q  +   I  +    + E +  + +  +      +DL  +LGKR   G L+
Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLALDE-IIQVAAGQQHLKLKGDDLQKYLGKRATKGQLL 725

Query: 741 PKGFPRSGKFL 751
           P+G+ ++ +  
Sbjct: 726 PRGYQKANRLF 736


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/738 (38%), Positives = 420/738 (56%), Gaps = 36/738 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL   A 
Sbjct: 32  LNEDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADAK 91

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RY
Sbjct: 92  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRY 151

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT I
Sbjct: 152 TEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEI 211

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN++E+  AA+AL+ +P++S  +LL  + GPD+P GG I+ S   I + Y  GRG  +
Sbjct: 212 PSHNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSIK 271

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR------------ 294
           VRARW VEE+ RG W IVV E+P      R++++I E+      + K+            
Sbjct: 272 VRARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKST 331

Query: 295 -IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES++D  VR+V  PK++++D +  +  +   + +E+  P+N+ ++     
Sbjct: 332 ILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDGR 391

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+   L  IL EW+  R   + RR+ +R+  +  R+ IL+G LI  LNID++I IIRN D
Sbjct: 392 PRQKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNSD 451

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ ++ LL S    
Sbjct: 452 EPKSDLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKQLQTERDDLEGLLQS---- 507

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                   R +KEI S   D G  R T  +    DK  + +  +  EP+TV++S +GW+R
Sbjct: 508 --DAVLRKRIIKEIESDLKDFGDDRRTLIQ---EDKRAVAETKVIDEPVTVIVSQKGWVR 562

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             + H  D +   FK GD+L       T D I    +DG+ YT+    L   RG G  + 
Sbjct: 563 VRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGARGDGSPLT 622

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             ++L     +V  +       +L+ +  G  F+   S++    + GK+F+ V S+    
Sbjct: 623 SFVNLATGSQMVAYYAGQPDDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVDSKVPGD 682

Query: 652 LV-----VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705
                  VKV    VA + E  KLL+FS+D++  + + GKGV L    D           
Sbjct: 683 APLGAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTGGKGVILMGLDDKEFLASAIAVG 742

Query: 706 CEGLTWIDSAGRSYNRSE 723
            +G T+   AGR+   +E
Sbjct: 743 SDGATY-SGAGRAGKPTE 759


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 283/744 (38%), Positives = 438/744 (58%), Gaps = 25/744 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E +V+ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ L   A +K
Sbjct: 9   EGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYT
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT IP
Sbjct: 129 EARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV+E+ +A   L+ +P+ ++  L+ Y+  PDFPT   I+     + + Y  GRG  ++
Sbjct: 189 PHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKL 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           R R+ +EE       +VVT +PYQV  ++++E+IA  + AK++P++ D+RDES  +   R
Sbjct: 249 RGRYTLEE-----GNVVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETPTR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+ P++  +D + LM  +F  +D+E    +N+NV+ +   P+VM L+ IL EWL  RR 
Sbjct: 304 LVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILDEWLRFRRA 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED PK  ++  F L+E Q +A
Sbjct: 364 TVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTALIEAFGLSERQAEA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L KLEE++I+ E D LLAE+E++  LL +     + I  E+R+  + +  + 
Sbjct: 424 ILELRLRHLAKLEEFKIRGEQDELLAERERLKELLGNDAALTDLIERELRQDADGYGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RR    E   A KA  +  +I  +PITVV+S +GWIRS K H +D + L +K GD 
Sbjct: 483 ----RRAPLVERGEA-KALSEVELIGADPITVVLSEKGWIRSAKGHEIDPAGLSYKAGDR 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +A    +   ++LL   G++YTL A NL S R  GE I   I+      +V   +   
Sbjct: 538 FHLAARGKSNQPLVLLDDAGRSYTLTAHNLPSARSQGEPITGRINPGAGARMVGVMLDVP 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGEN 667
             + L+ S  G  FI    ++I  ++ GK  L V     +   V V       +AVV   
Sbjct: 598 EARYLLASDGGYGFIARLDDLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDTRIAVVSNE 657

Query: 668 RKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +LL+F ++Q+P M++GKG ++        + ++  + D+        L  + +  R   
Sbjct: 658 GRLLVFPLEQLPVMAKGKGNKMIDIPGARAANREEFVRDLAMLPAGASLV-VHAGKRKQT 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744
            S  DL  ++G+RG  GS + +GF
Sbjct: 717 LSSRDLDYYVGERGRRGSKLSRGF 740


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 452/743 (60%), Gaps = 24/743 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++   ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +  ++NP+  ++ L + I GPDF     I+ S E ++E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310
           +A W  E+       I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E VR
Sbjct: 244 QAHWTQEKNE-----IIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++   +M  +F  +D++  +  NMN++S+   P+V  L  ++KEWL  R+ 
Sbjct: 299 LVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKEIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LL E+ KI+ +L S  +    I  E+ E+K+ F +  
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLEEQNKIEKILGSKTRLKTLIKNELLEIKDEFGED- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               R++   E S A   + ++ ++  E ITVV+S  GWIRS K H +D S+L ++  D 
Sbjct: 478 ----RKSPIKESSEAKVFSEEETLV-TESITVVLSEAGWIRSAKGHEIDPSSLSYRGEDK 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFCRGKSNQLSVFLDSNGKAYSLPSYSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENR 668
             K +++++ G  +I E   +++N + GK F+K+ +E ++   ++V  DHV  A V    
Sbjct: 593 DDKYMIMNTAGYGYISEFKNMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF I+++P + +GKG ++ +        K+  ++          L  ++S  R    
Sbjct: 653 RLLIFEINELPVLPKGKGNKIINIPTSKFVAKEEYMAHAQLISPSSSLR-VESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  ++  R   G+++P+G+
Sbjct: 712 KLKDLENYISSRAKRGNMLPQGY 734


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/749 (36%), Positives = 453/749 (60%), Gaps = 26/749 (3%)

Query: 9   SNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           SN ++  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+
Sbjct: 2   SNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLN 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G+++ D AA
Sbjct: 62  ATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           AYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAVGM
Sbjct: 121 AYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  GR
Sbjct: 181 ATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGR 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES  
Sbjct: 241 GSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDH 295

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 296 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHDILTEWL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L++
Sbjct: 356 SFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNLSD 415

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   + 
Sbjct: 416 IQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADAKT 475

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 476 FADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGLSY 529

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 530 RAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAIVEQV 589

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            +     K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       + 
Sbjct: 590 LMAAPETKVLMASDSGYGFICTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVSLV 649

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYK--DGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I ++P +S+GKG ++     Q+ K     ++ ++  K  + L ++ S 
Sbjct: 650 AMSSAGRMLVFPIAELPILSKGKGNKIINISAQAAKERRELLARLLLIKANQSLVFV-SG 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 709 KRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP  S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENSIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWLA RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLAFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++      + K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAPAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/738 (37%), Positives = 441/738 (59%), Gaps = 28/738 (3%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           RF  EE YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +KKSAR VG+V
Sbjct: 13  RFT-EEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAKYKKSARTVGDV 71

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  R+PL+ GQGN+G+ D   S AA RYTEAR+++ +E
Sbjct: 72  LGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPDDPKSFAAMRYTEARLSKFSE 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT IP HN +E+  
Sbjct: 132 VLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATDIPPHNAREVAN 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A   L++ P   +E ++E + GPD+PT   I+   E IV+ Y  GRG  ++RA + VE+ 
Sbjct: 192 ACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSIKMRACYSVED- 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319
                 IV+T +P+Q   +R++E+IA  + AK++PL+ D+RDES  +   R+V+ P++  
Sbjct: 251 ----GEIVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNR 306

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D + LM  +F  +D+E ++ +N+N+L +   P+V PL GILKEWL  R+  + RR   R
Sbjct: 307 VDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFRQTTVTRRLQHR 366

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  ++SRF+LT+ Q +AIL L+LR L
Sbjct: 367 LDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKEELMSRFALTDKQAEAILELKLRHL 426

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTT 498
            KLEE ++  E D L  E+EK+++LL S ++    I       KE+ + + + G  RR+ 
Sbjct: 427 AKLEEMKLTGEQDELNKEREKLETLLGSDRRLKTLIK------KELLADAENYGDERRSP 480

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E S A KA  ++ +   E +TVV+S +GW+R+ K H ++   L +K GDS   +    
Sbjct: 481 IVERSEA-KALSERDLTPAEAVTVVLSKKGWVRTAKGHDIEGDKLSYKSGDSYLASAEGK 539

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +   ++ L + GK+++  A  L S R  GE +     L   +++    +      LL+ S
Sbjct: 540 SNQPVVFLDSSGKSFSCEAHLLPSARSQGEPLTGRFSLVAGENVEHVLMAKDESHLLLAS 599

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSI 675
             G  F+ + S++++  + GK  + + +  K+     V  +  D V V+    ++L+F +
Sbjct: 600 DAGYGFVCQFSDLVSRNKNGKAIITLPTGAKILPPNNVNDLQHDKVIVISNEGRMLVFPV 659

Query: 676 DQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
             +P++S+GKG +L S        ++  +  +        +T I +  R       DL  
Sbjct: 660 ADLPQLSKGKGNKLISIPALRAQSREEYVVALATAAPDAAITLI-AGKRKLTLKPADLEH 718

Query: 729 WLGKRGGVGSLVPKGFPR 746
           + G+RG  G+ +P+G  R
Sbjct: 719 YYGERGRRGNKLPRGLQR 736


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 11  EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 71  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 131 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 191 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 251 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 306 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 366 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 426 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 484 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 540 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 600 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 659

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 660 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 718

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 719 KPSDIDNYRGERARKGSQLVRGL 741


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/719 (36%), Positives = 436/719 (60%), Gaps = 25/719 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V
Sbjct: 2   DRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMV 61

Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
            +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   +
Sbjct: 62  LMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 121

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++LL
Sbjct: 122 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLL 181

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           + + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV 
Sbjct: 182 DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVS 236

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336
            +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+E
Sbjct: 237 GARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE 296

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+A
Sbjct: 297 KSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA 356

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L  
Sbjct: 357 FLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 416

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +  M+ 
Sbjct: 417 ERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSEHDMLP 470

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y + 
Sbjct: 471 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 530

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R
Sbjct: 531 PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 590

Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL----- 689
            GK  + +     +   +V++   D +  + +  ++L+F +  +P++S+GKG ++     
Sbjct: 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 650

Query: 690 --QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              +  + G++ +        LT I    R       +L    G+RG  G+L+ +G  R
Sbjct: 651 AEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 707


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/753 (35%), Positives = 446/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYT-EEHGD----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +++        RR+   E   A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 ADMYGDD-----RRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDIDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  K +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRAGDEYKASAKGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
           +   +    ++L+F +  +P++ +GKG ++ S     +        +   + +G +    
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQTEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPAQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D   
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/736 (37%), Positives = 448/736 (60%), Gaps = 22/736 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR V
Sbjct: 8   ISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSARTV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYTE+++T+
Sbjct: 68  GDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLTK 127

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I SHN+ E
Sbjct: 128 FAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHNINE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A + +++NP+ + + LL+ I GPDF     IV + E + E Y  GRGGF+++A W  
Sbjct: 188 VLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQANWDK 247

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+T +PYQ   S+++E+IA+ ++ K++P++ D+ DE    E VR+V+  K
Sbjct: 248 E-----GNDIVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVISLK 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  ++ D +M  +F  +D++  +  NMN++S+   P+V  LD +LKEW+  R+  + R+ 
Sbjct: 303 SNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKITVTRKL 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  ++ R+ IL GL I YLNIDE+I IIR  D+PK  +  +F L++ QV+AIL +RL
Sbjct: 363 ENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEPKKELSKKFKLSDIQVNAILEIRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLE+ +I++E + L  E+ +I+ +L S  +    I  E+ E+K+ F +      R+
Sbjct: 423 RQLAKLEQIKIETEQNKLSEEQSEIEKILASRSRLKTLIKNELIEIKQEFGE-----ERK 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E S A K   ++  I  EP+T+V+S  GWIRS K H +D S+L ++  D L+    
Sbjct: 478 SPIIESSSA-KVFSEEETIVTEPVTIVLSKAGWIRSAKGHEIDPSSLSYRGDDLLQDFCR 536

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +    + L+++GKAYTL A +L S RG G+ I   I  +      +  + +   K +V
Sbjct: 537 GKSNQNTVFLASNGKAYTLSAHSLPSARGLGDPITGRISADSGIIFKSCAIGEQEDKYVV 596

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR--KLLIFS 674
            +S G  +I + + +I+N + G+ F+KV     +   +K   DH  +V  +   ++LIF+
Sbjct: 597 SNSAGFGYISDFASMISNKKSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIFN 656

Query: 675 IDQIPEMSRGKGVRL-----QSYKDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLLG 728
           I+++P + +GKG ++       +K G  S   I     E +  IDS  +       DL  
Sbjct: 657 IEELPFLQKGKGNKIINIPTPKFKSGEESMTHIELLAPESILRIDSGKQHMRLKFKDLQN 716

Query: 729 WLGKRGGVGSLVPKGF 744
           ++  R   G+++P+G+
Sbjct: 717 YISTRAKRGNMLPQGY 732


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/729 (39%), Positives = 426/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIETDAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  F   +   LL+ SS G  F+ +  ++++  + GK+F+ + +       + V  D   
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPDAAQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKALSGGGRGVILMAL-DAKETLVQALAINAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|332529074|ref|ZP_08405039.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/708 (37%), Positives = 406/708 (57%), Gaps = 57/708 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF----GAAFKKSARIVGEVIGK 85
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +     A   KSAR+VG+V+G+
Sbjct: 27  YLEYALSVVKGRALPDVSDGQKPVQRRILYAMERMGLGYSGNTAAKPVKSARVVGDVLGR 86

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+ +++ L+L 
Sbjct: 87  FHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTEARLAKISSLLLD 146

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN+ E+  A +A
Sbjct: 147 EIDEGTVDFMPNYDGSTEEPKQLPARLPFTLLNGASGIAVGLATEIPSHNISEVAAACVA 206

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI  P++  E+L E + GPD+P GG I+ +   I E+YR GRG  +VRARW +EE+ RG 
Sbjct: 207 LIKTPKLKDEELFELLPGPDYPGGGQIISAEADIAEAYRTGRGSLKVRARWKIEELARGQ 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDESAE 307
           W +VVTE+P  V   +++E+I EL                  + +  + +L+ +RDES++
Sbjct: 267 WQLVVTELPPGVSTQKVLEEIEELSNPKVKAGKKTVTQEQTQLKSTLLSVLDGVRDESSK 326

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           D  VR+V  PK   +D + L+ ++   + +ET  P+N+ ++ +   P    +  +L+EW+
Sbjct: 327 DAPVRLVCEPKTSKIDQNELITTLLAHTSLETSAPINLTMVGLDGKPVQKSMRQMLEEWI 386

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A RR+ + RRS  R+  +  R+ IL+G     LN+DE+I IIRN D+PKP ++ RF L++
Sbjct: 387 AFRRQTIARRSQHRLGKVQDRIHILEGRQTVLLNVDEVIKIIRNSDEPKPALIKRFRLSD 446

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL +RLR L +LE  +I+ EL  L  +++++  +L S        A     VKEI
Sbjct: 447 RQAEDILEIRLRQLARLEAIKIEQELAELRGKEKELQDILGS------PAALRKLMVKEI 500

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            + +   G  R T  +   A+K  + +  +  EP+TVV+S +GW+R+ + H  D ++  F
Sbjct: 501 EADAKAFGDARRTLIQ---AEKKAVAEVKVIDEPVTVVVSQKGWVRARQGHGHDAASFAF 557

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD L       T D +L   ++G+ Y++P   L   RG G+ +  +++L     +V  
Sbjct: 558 KAGDGLYGTFECRTVDVMLAFGSNGRVYSVPVSALPGARGDGQPLTTMVELEAGTQLVHY 617

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---------V 656
           +   ++  LL+ +S G  F+ +   +++  + GK F+   S+     V +          
Sbjct: 618 YAGPASAWLLLSTSGGYGFLAQVEHMVSRQKGGKAFINCGSDGTPDTVCRPSMAHAPNPA 677

Query: 657 TG--------------DHVAVVGENRKLLIFSIDQI-PEMSRGKGVRL 689
           TG               HV  V    ++L F I ++ P  S G+G+ L
Sbjct: 678 TGVVASAAEGGLHSPASHVVCVSTGGRILSFQIGELKPMPSGGRGLML 725


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 289/755 (38%), Positives = 443/755 (58%), Gaps = 35/755 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + 
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F    DL  RR+    ++R D   L++  ++  EPITVV+S  GW+R+ K H VD  
Sbjct: 475 RDEFG---DL--RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  + 
Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656
           ++   +   +   K+L+ +  G  FI +  ++    R GK  +K+S    +   +L+   
Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709
               VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + L
Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           T + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 278/744 (37%), Positives = 437/744 (58%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII AMSE+GL   A +KK
Sbjct: 8   EGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSANAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +++++ A+++L  + +  VD++  ++    EP + P++ P++L NG  GIAVGMAT IP 
Sbjct: 128 SKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+  A + L+DNP+  +++++ +I GPD+PT   I+ S   I + Y  GRG  ++R
Sbjct: 188 HNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGRGSVKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E    GS  IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  +   RI
Sbjct: 248 AVWHKE----GS-DIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  ++ + LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+  RR  
Sbjct: 303 VIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWIEFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + +R   R+  I  R+ IL GLL AYLNIDE+I IIR ED PK  +++RF LT  Q +AI
Sbjct: 363 VRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLTAIQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+++++ LL S ++    I  EI    E F     
Sbjct: 423 LEIKLRQLAKLEEIKIRGEQDELAKERDQLEKLLGSERRLSTLIKKEILADAEKFGDD-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  ++ +I  E ITV++S++GWIR  K H VD + L+FK GD  
Sbjct: 481 ---RRSPLIERDEA-KAMTERDLIPSEAITVILSDKGWIRHAKGHEVDPTTLNFKSGDKY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +    + +  +G++Y L +  L S R  GE I   +++     I    + +  
Sbjct: 537 LTHAHGKSNAPAVFIGNNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHVVMGEED 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGENR 668
              L+ S  G  F+ + S++++  + GKT L +         + V  +  D +  +    
Sbjct: 597 QTWLISSDAGYGFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEILAITNEG 656

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722
           ++L+F I  +P++ +GKG   + + + +     + + +   + +G T    AG R     
Sbjct: 657 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSRDEFLSYLLPLPQGATITLYAGKRKLGLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  GSL+P+G  R
Sbjct: 717 PSDLDNFRGERGRRGSLLPRGLQR 740


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/683 (37%), Positives = 429/683 (62%), Gaps = 16/683 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD  + 
Sbjct: 1   MTKDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA R
Sbjct: 61  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++T  A L++  +    VD++  ++    EPV+FPSK P +L NGTSGIAVGMAT 
Sbjct: 121 YTESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN+ E+ +A + +++ P+  +  LL+ I GPDF     I+ + E + E Y  GRGGF
Sbjct: 181 IPSHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           +++A+W  E+       I++  +PYQ   S+++E+IAE ++ K++P++ D+ DE   +  
Sbjct: 241 KIQAQWKQEKN-----SIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+V+  K+  ++ + LM  +F  +D++  + +NMN++S+   P+V PL  +LKEWLA R
Sbjct: 296 VRLVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ + R+   R+  ++ R+ IL+GLL  +++IDE+I IIR  D+PK  ++  F L+E Q 
Sbjct: 356 KDTVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKKDLIKAFKLSEIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL ++LR L KLE+ +++ E +NL  E+ +I+ +L S  +    I  E+ E+KE+F +
Sbjct: 416 NAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEIEKVLKSKARLKTLIKKELIEIKEMFGE 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R++   E S A K   ++  +  EPITVV+S  GWIRS K H +D  +L ++  
Sbjct: 476 -----ERKSPIIESSNA-KVFSEEDTLVTEPITVVLSKAGWIRSAKGHDIDPHSLSYRGD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L+      +    + L ++GKAY++P+ +L S RG GE I   ++ +     +++ + 
Sbjct: 530 DNLQDFARGKSNQLAVFLDSNGKAYSIPSHSLPSARGMGEPITGRLNADSGVQFISSIIG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
           +   K L++++ G  +I E   +  N + G+ F+K+    KM   + +  DH  +A V  
Sbjct: 590 EDNGKYLIMNTAGYGYISEFKNMTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL 689
             KLLIF ++++P + +GKG ++
Sbjct: 650 IGKLLIFKLEELPILGKGKGNKI 672


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/736 (38%), Positives = 428/736 (58%), Gaps = 22/736 (2%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR VG+
Sbjct: 14  LREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAMSELGLSAAAKYKKSARTVGD 73

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEAR+T  A
Sbjct: 74  VLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLTPYA 133

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            ++L  + +  V++   ++    EP   P++ PN+L NG SGIAVGMAT IP HN++E+ 
Sbjct: 134 RVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGGSGIAVGMATDIPPHNLREVV 193

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + L+D PE +  +L E++  PDFPT   ++  RE +   Y  G G  R RARW   E
Sbjct: 194 DACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREELRTIYERGHGTVRARARW---E 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
             R    IV+  +PYQV  ++++E+IA  I ++++P++ED+RDES  D  VRIV+  ++R
Sbjct: 251 YEREQAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVEDLRDESDHDAPVRIVVQLRSR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             DP+ +M+ +F  +D+E  + +++NV+ +   P+V  L  +L EWL+ R E + RR ++
Sbjct: 311 RQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSLRDLLAEWLSFRTETVRRRLTW 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R++ ++ R+ IL+GLL AYLNIDE+IAIIR ED+PKPV++ RF L++ Q +AIL LRLR 
Sbjct: 371 RLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPVLMERFGLSDAQAEAILELRLRH 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L +LEE +I+ E  +L  E++++ + L    +   Q+  E+    E          RR+ 
Sbjct: 431 LARLEEMKIRGEQGDLERERDELRATLGDAARLREQVKSELLGDAEAHGDE-----RRSP 485

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             +   A +A  +  ++  EP+TVV+S +GW+R+ K H VD + L +K GD         
Sbjct: 486 LVQRGPA-RAMDETELMPSEPVTVVLSEKGWVRAAKGHEVDATGLSYKAGDGYLDHALGR 544

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +    + L + G+AY +PA  L S R  GE +   +         +    DS  + L+ S
Sbjct: 545 SNQPAIFLDSTGRAYAVPAHTLPSARSQGEPLTKRLTPPEKARFQSVLAGDSESRWLLAS 604

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G  F V   E+ +  R GK  L +     +   V V     G  V V   + +LL+F 
Sbjct: 605 DAGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDGRLLVFP 664

Query: 675 IDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLG 728
           ++++PEM+RGKG +L     Q  +D     V    +  G      AG++  R S +DL  
Sbjct: 665 LEELPEMARGKGNKLIGIPAQRLRDREEVVVAVAVLPAGAALRVEAGKTGKRLSHSDLEA 724

Query: 729 WLGKRGGVGSLVPKGF 744
           +   RG  G  +P+G 
Sbjct: 725 FRAARGRRGVQLPRGL 740


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/747 (36%), Positives = 450/747 (60%), Gaps = 22/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ +++ LL  + GPDFPT   I+  +E I + Y+ GR
Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  VRIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+L++
Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++  + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   L++
Sbjct: 477 YASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L   +L S R  GE +   + L     I   
Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIDQL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAV 663
            + +    LL+ S  G  FI + ++++A  + GK  + +    K+   L +K     +  
Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-R 717
           +    ++LIF +  +PE+S+GKG   V + S      S+++     I E  + +  +G R
Sbjct: 651 LTSAGRMLIFPVQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/726 (39%), Positives = 422/726 (58%), Gaps = 39/726 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE  + + L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ L   A  
Sbjct: 14  AEEPRETLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLAPDAKP 73

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD AAA RYT
Sbjct: 74  RKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYT 133

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +A L+L+ + +  V+F+D Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 134 EARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIAVGLATEIP 193

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ EAA ALI NP+IS ++L+E + GPDFP GG I+ +  +I E YR GRG  +V
Sbjct: 194 SHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYRNGRGSLKV 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------ 294
           RARW +EE+ RG W  VVTE+P      +++E+I E+   K                   
Sbjct: 254 RARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPEQISLRQQF 313

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDE++ D  VR+VL PK++ ++P   M+S+   + +E   P+N+ ++ +   P
Sbjct: 314 LGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLVMIGIDGRP 373

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +   L  ILKEW+  R   +  R+S+R+  +D R+ IL+G     LNID +I IIR  D+
Sbjct: 374 RQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVIRIIRESDE 433

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EKE +  LL+      
Sbjct: 434 PKTALIETFRLSEKQADDILEIRLRQLARLEKIRIEQELAELRREKETLHDLLD------ 487

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           N  + +   ++EI +     G  R T  E   A+KA + +  I  EP+TV++S  GW+R 
Sbjct: 488 NPASMKRLVIREIEADRKKFGDIRRTLIE--EAEKAVV-EPKIADEPVTVIVSQNGWVRQ 544

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
              H + LS L FK GDSL  A    +TD +L  S+ G+ YT+    L  GRG G  I  
Sbjct: 545 RTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTVAVHALPGGRGDGMPITT 604

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
             +   ++ IV  F       +L+ +  G  F  + +++ +  R GK+F+ +  +E +  
Sbjct: 605 FAETGIDETIVRYFAGSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISLEKDETLLP 664

Query: 653 VVKVTGDH--VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG-------ISDVIC 702
            V ++ D   +  +  N  LL+F + ++   +S G+GV L   + G        +S+  C
Sbjct: 665 PVAISPDDKWIGALSGNGHLLLFDMTELRALLSGGRGVILMGLEKGDKLMAARPVSEKGC 724

Query: 703 FKICEG 708
             +C+ 
Sbjct: 725 TVVCQA 730


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/745 (38%), Positives = 432/745 (57%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 4   EGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 64  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+   +EL+L  + +  V++   ++    EP V P++ PNLL NGT+GIAVGMAT IP 
Sbjct: 124 SRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + L++NP+  +  LLE+I GPDFPT   I+  R  I+E Y  GRG  R+R
Sbjct: 184 HNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSIRMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+  E+       IV+T +P+Q   S+++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 244 ARFEKED-----GDIVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  +LKEWL  R E 
Sbjct: 299 VIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFRHET 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  ++ RF L++ Q ++I
Sbjct: 359 VRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKPKLKLMERFDLSDRQAESI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E   L  E + +   L S ++    I  EI EV E +     
Sbjct: 419 LELKLRHLAKLEEMKIKGEQSELEDEADWLQLTLGSKQRMKTLIKKEIEEVIEQYGDD-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E   A KA  +  ++  EP+TV++S +GW+R  K H VD   ++++ GD  
Sbjct: 477 ---RRSPIVERKEA-KALSETELLPTEPVTVILSEKGWVRCAKGHDVDAVGMNYRSGDKY 532

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             +    +    + L + G+ ++L A  L S RG GE +   ++     + +   + +  
Sbjct: 533 LDSAQGKSNQYAVFLDSTGRTFSLLANTLPSARGLGEPVTGRVNPIAGAEFMATMMGEDD 592

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDH--VAVVGEN 667
            K L  +  G  F+ + S+++  TR GK FL + S  K+     VK +     VAV  E 
Sbjct: 593 DKFLFATDAGYGFVAKFSDLVTKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVSNEG 652

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC------EGLTWIDSAGRSYNR 721
           R +L+F +  +PE+++GKG ++ S     +     F I       +    I S  R    
Sbjct: 653 R-MLVFPLADLPELAKGKGNKIISIPTAKLKLREEFMIAVTAIGEDDSLVIHSGKRHLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
              DL  + G+RG  G  +P+GF R
Sbjct: 712 KPKDLEHYRGERGRRGHKLPRGFQR 736


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/719 (36%), Positives = 436/719 (60%), Gaps = 25/719 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V
Sbjct: 2   DRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMV 61

Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
            +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   +
Sbjct: 62  LMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 121

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++LL
Sbjct: 122 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLL 181

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           + + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV 
Sbjct: 182 DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVS 236

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336
            +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+E
Sbjct: 237 GARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE 296

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+A
Sbjct: 297 KSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA 356

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L  
Sbjct: 357 FLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRCEQSELEK 416

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E++++  +L S ++  N +  E++   + +        RR+   E   A KA  +  M+ 
Sbjct: 417 ERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSEHDMLP 470

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y + 
Sbjct: 471 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 530

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R
Sbjct: 531 PITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARNR 590

Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL----- 689
            GK  + +     +   +V++   D +  + +  ++L+F +  +P++S+GKG ++     
Sbjct: 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 650

Query: 690 --QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              +  + G++ +        LT I    R       +L    G+RG  G+L+ +G  R
Sbjct: 651 AEAARGEDGLAQLYVLPSQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 707


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/743 (37%), Positives = 430/743 (57%), Gaps = 39/743 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR+
Sbjct: 26  AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARV 85

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T 
Sbjct: 86  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 145

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 146 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 205

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +ALI +P++   +L   I GPDF  GG I+   E I + Y  GRG  +VRARW  
Sbjct: 206 VAQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQF 265

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           EE+ RG W +VVTE+P      +++E+I E+   K                   + LL+ 
Sbjct: 266 EEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDA 325

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L 
Sbjct: 326 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLR 385

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+A R   + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++
Sbjct: 386 DILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALM 445

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF L+E Q + IL +RLR L +LE ++I+ EL +   ++ ++  LL+      N  + +
Sbjct: 446 ERFKLSERQAEDILEMRLRQLARLEGFKIEQELADKREDQVRLQELLD------NPASLK 499

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H  
Sbjct: 500 RLLIKEIEADAKQYGDDRRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 556

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL  
Sbjct: 557 DASQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVPVGGLPSARGDGQPVTTMIDLGS 616

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT 657
              IV         + L+ +  G  F  + S++++  R GK F+ +   +E ++ V    
Sbjct: 617 GTRIVHTIAAAPDSRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFA 676

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           G   +A++    K L+F +D++  +S G    +    DG  +D +   +  G   + +AG
Sbjct: 677 GAKQLALLSHKGKFLVFGLDEVKTLSGGGRGTILMGLDG--TDKLDQTVPIGAGGLRAAG 734

Query: 717 RSYNRSENDLL------GWLGKR 733
              N+   D+L       ++GKR
Sbjct: 735 IYRNKHTEDILVGDALAPYIGKR 757


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/748 (36%), Positives = 425/748 (56%), Gaps = 41/748 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM  MGL  GA   KSAR+
Sbjct: 24  AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARV 83

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T 
Sbjct: 84  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 143

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 144 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 203

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +ALI  P++   +L   I GPDF  GG I+     I + Y  GRG  +VRARW  
Sbjct: 204 VAQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITPAADIAQIYGTGRGSLKVRARWTF 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           EE+ RG W +V+TE+P      +++E+I E+   K                   + LL+ 
Sbjct: 264 EEMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDA 323

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L 
Sbjct: 324 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLR 383

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+A R   + RR+ FR+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++
Sbjct: 384 DILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRMLVYLNVDEVIQTIRESDEPRAALM 443

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF L+E Q + IL +RLR L +LE ++I+ EL +   ++  +  LL+      N    +
Sbjct: 444 ERFKLSERQAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLD------NPTTLK 497

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H  
Sbjct: 498 RLLIKEIEADAKQYGDERRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 554

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL  
Sbjct: 555 DASQFTFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLPSARGDGQPVTTMIDLES 614

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV         + L+ +  G  F  + S++++  R GK F+ + + ++M   V +  
Sbjct: 615 GTRIVHTIAAAPESRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFE 674

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              H+A++    K L+F +D+   +S  G+G  L        SD +   +  G   + + 
Sbjct: 675 GATHLALLSAKGKFLVFGLDECKSLSGGGRGTILMGLD---ASDKLDQTVPIGARGLRAT 731

Query: 716 GRSYNRSENDLLG------WLGKRGGVG 737
           G   N+   D+L       ++GKR   G
Sbjct: 732 GIYRNKLTEDILAGDALAPYVGKRARKG 759


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/700 (38%), Positives = 407/700 (58%), Gaps = 28/700 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM  MGL   A  
Sbjct: 10  ADEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAMGLRADAKP 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYT
Sbjct: 70  VKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYT 129

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T ++ L+L  +D   VDF   Y+  + EP + P++ P +L NG SGIAVGMAT IP
Sbjct: 130 EARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIAVGMATEIP 189

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A +A+I NP IS+  LL  + GPD+P GG I+     I + Y  GRG  +V
Sbjct: 190 PHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYESGRGSLKV 249

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------R 294
           RARW +EE+ RG W +VVTE+P      +++E+I E+   K                   
Sbjct: 250 RARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPEQTQLKTTM 309

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES +D  VR+V  PK+++ +    ++++   + +E+  P+N+ ++     P
Sbjct: 310 LSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLVMIGTDGRP 369

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +   L  IL+EW+  R   + RR+ F++  ++ R+ IL+G ++  LNIDE+I IIR  D+
Sbjct: 370 RQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVIRIIRESDE 429

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+ ++D LL S     
Sbjct: 430 PKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIEQELAKLRDEQAELDVLLKSETMMR 489

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
            +I  EI +  + +S   D   RRT   E SRA      +  +  EP+TV++S +GW+R+
Sbjct: 490 RRIIKEIEQDAKQYSPE-DKDPRRTLIQEASRA----AAEVKVIDEPVTVIVSGKGWVRT 544

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H  D S   FK GD+L       T D +L   ++G+ Y++    L  GRG G  +  
Sbjct: 545 RQGHGHDASQFTFKAGDNLYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGRGDGVPVTT 604

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           LIDL     I   F   +  ++L+ ++ GN F+ +  ++I   + GK F+ +   + +  
Sbjct: 605 LIDLAAGTQIAHTFAGAAEQRMLIATAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLA 664

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
              +  +  HVA    N +LL+  +D++  +S  G+GV L
Sbjct: 665 PTPIGEECTHVACFSANGRLLLAGLDEVKVLSAGGRGVIL 704


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/758 (37%), Positives = 455/758 (60%), Gaps = 31/758 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ VSL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MSDQFHIAADGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L  GA +KKSAR VG+VIGK HPHGD SVY+++V +AQ F  RYPL+ GQGN+G + D  
Sbjct: 61  LKAGAKYKKSARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++   ++L+L  + +  V ++  ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P  +I++L E+I GPD+PT   I+   + +   Y+
Sbjct: 181 VGMATDIPPHNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA W  E    GS  +VVT +P+QV  S+++E+IA+ I AK++P++ D+RDE
Sbjct: 241 TGKGSIRMRAVWQKE----GS-DVVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D + +M  +F  +D+E  + +N+N++ +   P+V  LD IL 
Sbjct: 296 SDHENPTRLVIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++ R+  L  L+I YLN+DE+I IIR E+ PKPV++ RF 
Sbjct: 356 EWLQFRSDTVRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPVLIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + I+  +LR L +LEE +I+SE ++L  EKE ++ +L S ++    +  E+ EV
Sbjct: 416 LVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLEQILASARRLKTLVKKELLEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A KA  ++ ++  EP+TVV+S +GW+RS K H +D  +
Sbjct: 476 AEEYGDD-----RRSPIASRGEA-KAFTEEELMTTEPVTVVLSEKGWVRSAKGHDIDPQS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS  +A    +   +++L + GKAYT+ A +L S RG GE +   I+       
Sbjct: 530 LSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSLPSARGQGEPLTGRINSPSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               +  +    L+ S  G  F+V+ S++    + GK  L +    ++     V G    
Sbjct: 590 EGLMMGRADDLYLLASDAGYGFVVKFSDLQTKNKAGKAALSLPKGARVLQPGMVAGTETE 649

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGL 709
             +VA V    ++LIF + ++P MSRGKG         RLQ+ ++  ++  I   I E  
Sbjct: 650 LRYVAAVSNEGRMLIFPLTELPTMSRGKGNKIIGIPPSRLQAREEFVVAVAI---INERD 706

Query: 710 TWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFPR 746
           T    AG+ Y N   ++L  ++G+RG  G  +P+GF +
Sbjct: 707 TLRVHAGKRYVNMKFSELDHYMGERGRRGHKLPRGFQK 744


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 291/756 (38%), Positives = 444/756 (58%), Gaps = 37/756 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  D+PK  ++SRF+
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S     + +  E+  V
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS-----HSLLKEL--V 467

Query: 483 KEIFSKSTD-LGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL 540
           KE  +K  D  G  R +   ++R D   L++  ++  EPITVV+S  GW+R+ K H VD 
Sbjct: 468 KEEITKDRDEFGDPRLSPI-ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDG 526

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  +
Sbjct: 527 KELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAE 584

Query: 601 DIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVK 655
            ++   +   +   K+L+ +  G  FI +  ++    R GK  +K+S    +   +L+  
Sbjct: 585 GVLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPN 644

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708
                VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + 
Sbjct: 645 REQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           LT + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 705 LT-VYAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYAQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + 
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F        RR+    ++R D   L++  ++  EPITVV+S  GW+R+ K H VD  
Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  + 
Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656
           ++   +   +   K+L+ +  G  FI +  ++    R GK  +K+S    +   +L+   
Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709
               VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + L
Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           T + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/740 (36%), Positives = 444/740 (60%), Gaps = 29/740 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LLE + GPDFPT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVVVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K  +
Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKAGDSYKSDV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + T G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEADERKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V+    D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIDDESDMLLAITQAGRMLMF 655

Query: 674 SIDQIPEMSRGKGVRL------QSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            +  +P++S+GKG ++      ++ K + G++ +        LT I    R       +L
Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEALKGEDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714

Query: 727 LGWLGKRGGVGSLVPKGFPR 746
               G+RG  G+L+ +G  R
Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/753 (36%), Positives = 448/753 (59%), Gaps = 29/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GLD  +  KK
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIAVGMAT +P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y  G+G  R+R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309
           A + +E+       I+VT +P+QV  ++++E+IA L+ AK  ++P + D+RDES  +   
Sbjct: 250 AVYHIED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+ P N  +D ++LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L EWL  R 
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLKNLRNLLVEWLEFRI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++RF L+E Q D
Sbjct: 365 NTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIARFELSEIQAD 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ +  E +   
Sbjct: 425 YILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDD 484

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   + + A KA  +  ++  E ITVV+S +GW+RS K H +D + L +K GD
Sbjct: 485 -----RRSPIVQRAEA-KALTETELLPNEKITVVLSEKGWVRSAKGHDIDATGLSYKAGD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K A    +    + + + G++Y++PA  L S RG GE +   +      +     + D
Sbjct: 539 GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGANFECVLLPD 598

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGE 666
                ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     + +A V  
Sbjct: 599 DDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTT 658

Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718
             +LL+F I  +P++ +GKG ++        + ++  ++D+    I EG T +  AG R+
Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGSTLVLQAGKRT 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 717 LSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/754 (36%), Positives = 444/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + L+DNP   ++ L+ ++ GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWNEED-----GDIVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLKTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ RRE + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR E++P  VM+ RF+
Sbjct: 356 EWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEPGRVMMERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S ++    +       
Sbjct: 416 ISEAQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLSTLLK------ 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KEI + +   G  RRT   E + A  A  ++ +   EP+TV++S++GW+R+ K H VD+ 
Sbjct: 470 KEILADAEKYGDDRRTPLVERATA-VALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVE 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD+     H  +  + + LST G+ Y+L A  L S R  GE +     L   ++
Sbjct: 529 GLSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLPSARSQGEPLTGRFALGAGEE 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
           +    + +     L+ S  G  F+ +  ++I   + GK  L V     +    K+     
Sbjct: 589 VRHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDT 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWID 713
           D    +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +   
Sbjct: 649 DLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTL 708

Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            AG R       DL  + G+RG  G+ +P+G  R
Sbjct: 709 FAGKRKLTLKPADLDYYRGERGRRGAKLPRGLQR 742


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/755 (38%), Positives = 442/755 (58%), Gaps = 35/755 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + 
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F        RR+    ++R D   L++  ++  EPITVV+S  GW+R+ K H VD  
Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  + 
Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAEG 585

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656
           ++   +   +   K+L+ +  G  FI +  ++    R GK  +K+S +  +   +L+   
Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNR 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709
               VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + L
Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDIQVLTTNDSL 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           T + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 288/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYAQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + 
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F        RR+    ++R D   L++  ++  EPITVV+S  GW+R+ K H VD  
Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  + 
Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656
           I+   +   +   K+L+ +  G  FI +  ++    R GK  +K+S    +   +L+   
Sbjct: 586 ILFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709
               VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + L
Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           T + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 276/691 (39%), Positives = 416/691 (60%), Gaps = 32/691 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI  AM+EMGL   A   KSAR+VG+V+GK 
Sbjct: 27  ERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFAMNEMGLSDNAKPVKSARVVGDVLGKY 86

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLAE 146

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+    EP V P++ P +L NG SGIAVG+AT IPSHN++E+  AA+AL
Sbjct: 147 IDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREVASAAVAL 206

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I +P++S  +L++++ GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W
Sbjct: 207 IRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + L++ +RDES +D
Sbjct: 267 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTLLGLVDAVRDESGKD 326

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+  PLNM ++     P+   L  IL EW+A
Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSEILHEWIA 386

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F LT+ 
Sbjct: 387 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLTDR 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK K++ LL S      Q+      +KEI 
Sbjct: 447 QAEDILEIRLRQLARLEKIKIEKELAELREEKAKLEELLGSEPAMKRQL------IKEIE 500

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 501 ADAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDTAGFTFK 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 558 AGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSHLMHYY 617

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
              +   LL+ SS G  FI +  ++++  + GK+F+ + +       + +  D   VA +
Sbjct: 618 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAAQVACL 677

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               +LL+F +D++  +S  G+GV L +  D
Sbjct: 678 SSGGRLLVFGLDEMKTLSGGGRGVTLMALDD 708


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/735 (37%), Positives = 430/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+GL+  A  KKSAR V
Sbjct: 15  LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLRAIYETGHGSVRARATYKK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDES     VR+VL P+
Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLTFRSDTVTRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+L+E Q + IL  +L
Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFALSEEQAEYILETKL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E + L  E+ ++ ++L S  +    I  E+    + F  +     RR
Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQLMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   +   A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ 
Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           + +T  +  L +DG+AY+     L S RG+GE +                  ++  + ++
Sbjct: 544 SRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASFQVLASGENNARFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  L +++   +    +V     D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAI 663

Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729
           +   +PE+ +GKG   + +   K G    V    +  G T  + S  R  + S  DL  +
Sbjct: 664 TASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSGARVMSLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           +G R   G+L+P+G+
Sbjct: 724 VGARASRGALLPRGW 738


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/743 (35%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR + R+  I  R+ IL+GL+IA+LNIDE I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/738 (36%), Positives = 434/738 (58%), Gaps = 25/738 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +KKSAR VG+
Sbjct: 15  LREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKSARTVGD 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEAR+   A
Sbjct: 75  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTEARLAPYA 134

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           +L+LQ + +  VD+   ++    EP + P++ PN+L NG +GIAVGMAT IP HN++E+ 
Sbjct: 135 KLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPHNLREVV 194

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A + L+D PE     L+ ++  PDFPT   I+ +++ I   Y  G G  R+RAR+    
Sbjct: 195 SACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMRARY---- 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
             R +  I+VT +PYQV  S+++E+IA  + +K++P++ED+RDES  +   R+V+ P++ 
Sbjct: 251 -ERENGDIIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLVITPRSN 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D   +ME +F  +D+E  + +N+NV+++   P+V+ L  +L EWL  R + + RR ++
Sbjct: 310 RVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDTVRRRLNW 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R+Q +  R+ IL+GLLIAYLNIDE+IAIIR ED+PKPV+++RF L+E Q +AIL L+LR 
Sbjct: 370 RLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPVLMARFGLSERQAEAILELKLRH 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE +I+ E  +L  E++++ ++L S ++    I  E+R   E +        RR+ 
Sbjct: 430 LAKLEEMKIRGEQGDLERERDELQTILGSDERLRELIKEELRADAEQYGDE-----RRSP 484

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
               S A +A  +  ++  EP+TVV+S +GW+R+ K H VD   L++K GD  +      
Sbjct: 485 LVTRSAA-RALDETDLMPSEPVTVVLSEKGWVRAAKGHEVDAPGLNYKAGDQYRDHAPGR 543

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +  + + L   G++Y+L A  L S RG GE +   +              D     ++ +
Sbjct: 544 SNQQAVFLDHTGRSYSLTAHTLPSARGQGEPLTGRLSPAPGARFEHVLCGDPASLWVLAT 603

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSI 675
             G  F+   S++ A  R GK  L V    ++      T D    +A V    +LL+F +
Sbjct: 604 DAGYGFVCALSDMYAKNRSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGRLLVFPL 663

Query: 676 DQIPEMSRGKGVRLQSYKDGGI-------SDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            ++P +++GKG ++       +       + +      +GL+ +    R      +DL  
Sbjct: 664 SELPRLAKGKGNKIIGIPAAAVKAREELLTGLAVIAPGQGLS-LTVGRRGMTLKPDDLAA 722

Query: 729 WLGKRGGVGSLVPKGFPR 746
           +   RG  G+L+P+G  R
Sbjct: 723 YRAPRGRRGALLPRGLRR 740


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 422/704 (59%), Gaps = 36/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ LI NP++S  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKS 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D ++  FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPASFSFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  F   +  +LL+ SS G  F+ +  ++++  + GK F+ + +       M 
Sbjct: 607 LESGSHLMHYFAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           ++   T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +  +  + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++S+GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/745 (36%), Positives = 443/745 (59%), Gaps = 23/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE +L  +    V +   ++   +EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL++NP+  +  L+++I  PD+PT   I+ S+E I + Y+ GRG  
Sbjct: 184 IPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W +++ G      V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RLRAVWEIDD-GHA----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWLLFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE +  R + R++ + +R+ IL GLLIAYLNIDE+I IIRNED+PK V+V+RF+L+E Q 
Sbjct: 359 RETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAVLVARFALSETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++IL L+LR L KLEE++++ E D+L  E++++ ++L S ++    I  EI    + +  
Sbjct: 419 ESILELKLRHLAKLEEFKLRGEQDDLAKERDQLQAILGSERRLNTLIKKEIETDAQTYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EP+T+++S  GW+RS K H +D + L++K G
Sbjct: 479 D-----RRSPLKERIEA-KAMNEHDILPSEPVTIILSVMGWVRSAKGHDIDPTNLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A    T   ++ L + G++Y+L   +L S RG GE +   + L     I      
Sbjct: 533 DGFCSAARGKTNQPVVFLDSTGRSYSLDPLDLPSARGQGEPLTGKLALPPGATIEHVLTA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
               K L+ S  G  FI   S+++A  + GK  + + S  K+   ++V     D +  + 
Sbjct: 593 AEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC---FKICEGLTWIDSAGRSY 719
           +  ++LIF + ++P++S+GKG   + + + +     D++    F   +    +    R  
Sbjct: 653 KAGRMLIFPVSELPQLSKGKGNKIINISAAQSASRDDLLVWLMFLQPQSSITLYFGKRKL 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
             +  DL  +  +RG  GS +P+G 
Sbjct: 713 KLNPEDLQKYRAERGRKGSSLPRGL 737


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +  +  + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++S+GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/759 (37%), Positives = 432/759 (56%), Gaps = 45/759 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++AM  MGL   A   
Sbjct: 14  EDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYAMWRMGLTADAKPV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 74  KSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGSRDGDGAAAMRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A L+L  +D    DF   Y+   +EP + P++ P +L NG SGIAVGMAT IP+
Sbjct: 134 ARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGASGIAVGMATEIPA 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I  +Y +GRG  +VR
Sbjct: 194 HNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIAAAYAVGRGSLKVR 253

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----------------- 296
           ARW VEE+ RG W +V+ E+P+      ++E+I EL   K  P                 
Sbjct: 254 ARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKALAPEQIALKATLL 313

Query: 297 -LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            LL+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P+N+ ++     P+
Sbjct: 314 NLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVPINLVMIGTDGKPR 373

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+DE+I  IRN D P
Sbjct: 374 QKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNLDEVIETIRNSDDP 433

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  ++  LL   K    
Sbjct: 434 RPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTR 493

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I      + EI + +   G  R T  +   A++  + +  +  E +TV++S +GW+R+ 
Sbjct: 494 RI------ISEIEADAKQFGDDRRTLIQ---AEQRAVAEVKVVDEAVTVIVSQKGWLRTQ 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K H + LSAL FK GD+L       + D +++L +DG+AY++   +L  GRG G+ +   
Sbjct: 545 KGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSIDVADLPGGRGDGQPVTSF 604

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651
           I+L      +       T  LL+ +++G  F+    + ++  R GKTF+ +   +  +  
Sbjct: 605 IELAPGTQALHYLAGARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRP 664

Query: 652 LVVKV-TGD----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL--QSYKDGGISDVICF 703
           LV+ +  GD     +A++    +LLI++  ++  +SR G+GV L  Q  K+  +S     
Sbjct: 665 LVLGIDVGDSPTGRLALLSTGGRLLIYAAAEVKALSRGGRGVTLMEQDAKEALLSIAHLV 724

Query: 704 KICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVG 737
              E L  +   GR        L G     +LGKR   G
Sbjct: 725 GEREAL-LVSGKGRGGTERSTSLSGTQQALYLGKRAKRG 762


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 421/704 (59%), Gaps = 36/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RRS  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + +       M 
Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           ++   T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/744 (37%), Positives = 430/744 (57%), Gaps = 41/744 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM  MGL  GA   KSAR+
Sbjct: 21  AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARV 80

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T 
Sbjct: 81  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 140

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 141 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 200

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +ALI  P++   +L   I GPDF  GG I+     I + Y  GRG  +VRARW  
Sbjct: 201 VAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAADIAQIYAGGRGSLKVRARWQF 260

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           EE+ RG W +VVTE+P      +++E+I E+   K                   + LL+ 
Sbjct: 261 EEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDA 320

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L 
Sbjct: 321 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSASVNLVCIGTDGRPRQKGLR 380

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EWLA R   + RR+ FR+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++
Sbjct: 381 DILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALM 440

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+L++ Q + IL +RLR L +LE ++I+ EL++   E+  +  LL+      N    +
Sbjct: 441 ERFNLSDRQAEDILEVRLRQLARLEGFKIEQELEDKRKEQVALQELLD------NPNTLK 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H  
Sbjct: 495 RLLIKEIEADAKQYGDDRRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 551

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D S   FK+GD L  A    TTD ++ +  +G+ Y++P   L S RG G+ +  +IDL  
Sbjct: 552 DASQFGFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVAGLPSARGDGQPVTTMIDLES 611

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT 657
              IV      +  + L+ +  G  F  + S++ +  R GK F+ + + +E ++ V    
Sbjct: 612 GTRIVHTIAAAADSRWLLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFE 671

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G   +A++ +  K L+F +D++  +S  G+G  L    DG  +D +   +  G   + +A
Sbjct: 672 GATQLALLSQKGKFLVFGLDEVKSLSGGGRGTILMGL-DG--ADKLDQTVPIGALGLRAA 728

Query: 716 GRSYNRSENDLLG------WLGKR 733
           G   N+   D+L       ++GKR
Sbjct: 729 GIYRNKHTEDILAGAALAVYVGKR 752


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/745 (36%), Positives = 446/745 (59%), Gaps = 29/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII++MSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + L++NP  ++ +LL  I GPD+PT   I+  +  IV+ Y  GRG  ++R
Sbjct: 188 HNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  EE       IV+  +P+Q   S++IE+IA  +  K++PL+EDIRDES  +  +RI
Sbjct: 248 AVWKKEENE-----IVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLVTILTEWLHFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR S+R+  +  R+ IL GL+ A+LNID++I IIR++D+PK  ++ RF+LT  Q DAI
Sbjct: 363 VVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEPKAELIERFALTGIQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+Q+++E   L  E+ ++  LL S ++  N I  EI++  + F     
Sbjct: 423 LNLRLRHLAKLEEHQLQAEQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKAF----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +  RR+   E + A KA  +  +   E ITV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 478 VSPRRSPLIERAEA-KAIAESDLTPTEDITVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ L + G+AYT+    L S R  GE +   I L     I    + +  
Sbjct: 537 LAHTRGRSNQPVVFLDSTGRAYTIDPTTLPSARSQGEPLTSKISLPEGASIQQVLMANPE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGEN- 667
            K+L+ S  G  FI   +++I+  + GK    +S  E  K++V       D +++V  + 
Sbjct: 597 SKMLMASDAGYGFICTFNDLISRNKAGKAV--ISLPENAKILVPQWIENSDELSIVAMST 654

Query: 668 -RKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSY 719
             ++L+F + ++P +++GKG ++     Q+ K+G   ++ ++  K  + L ++ +  R  
Sbjct: 655 INRMLVFPLTELPTLTKGKGNKIMNIATQAAKEGKELLARLLLIKSNQSLVFM-AGKRKI 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
                D+  + G+R   G+ + +G 
Sbjct: 714 TLKPADIDHYRGERARKGTQLVRGL 738


>gi|332535130|ref|ZP_08410940.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 276/753 (36%), Positives = 449/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-TEEHGD----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRCILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+  +L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLAQILGSERRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S A KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGDD-----RRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRSGDGFRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTPGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++   V  D
Sbjct: 590 EHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
           +   +    ++L+F +  +P++S+GKG ++ S     +        +   + +G +    
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLSKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/734 (38%), Positives = 441/734 (60%), Gaps = 31/734 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSAR VG+V+GK 
Sbjct: 20  EKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKHKKSARTVGDVLGKF 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RYTEAR++  A+++L 
Sbjct: 80  HPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSAYADVLLA 139

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I  HN+ E+  A + 
Sbjct: 140 ELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNGATGIAVGMASDILPHNLTEVANACVH 199

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+DNP+  +  ++++I GPDFPT   I+   E+I   Y  G G  ++RA +  E+     
Sbjct: 200 LLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAITTLYATGHGSIKMRAIYNPEK----- 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES  +   R+V+ P++  +D D
Sbjct: 255 QNIVITALPYQVSGAKVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRSNRVDVD 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL +R  V+ RR  +R+  +
Sbjct: 315 GLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNLITILSEWLIYRVSVVKRRLEYRLAKV 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ +L+GLLIAYLNIDE+IAIIR  + PK  +++RF+L+E Q +AIL ++LR L KLE
Sbjct: 375 LERIHVLEGLLIAYLNIDEVIAIIREHEHPKQGLIARFNLSERQAEAILEMKLRHLAKLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ ELD L  E++ + S+L S ++  N +  EI + ++ F      G  R +   V 
Sbjct: 435 EIKIRGELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDAF------GDVRRSPIIVR 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +  +A  ++ ++  EPITVV+S  GW+R+ K H ++ S L +K GD  K    A +  +I
Sbjct: 489 QESQALKEEDILPNEPITVVLSKNGWVRAAKGHDINGSELSYKAGDEFKAQATARSNQQI 548

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKG 621
           +   ++GK Y+LP  +L S RG GE   L   LN  + I+   V     + LV+  S  G
Sbjct: 549 VFFDSEGKVYSLPGHSLPSARGQGEP--LTGKLNPAEGILFETVVGGEAEQLVLLASDAG 606

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQ 677
             F+ + S++    R GK  +K+ +  ++ L  ++  +     VA      +LLIFSI +
Sbjct: 607 YGFVAKMSDLYVKNRNGKACVKLPAASRI-LPPRILPNQEELLVACATSVGRLLIFSIKE 665

Query: 678 IPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           +PE+SRGKG +L S        ++  + DV      + LT + +  R +     DL  + 
Sbjct: 666 LPELSRGKGNKLISIPATKTASREEYVIDVQVLSNQDVLT-VHAGKRHFTLKGADLEHYK 724

Query: 731 GKRGGVGSLVPKGF 744
           G+RG  G+ +P+G 
Sbjct: 725 GERGRRGNRLPRGL 738


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV+++RF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMNRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASTKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +  +  + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++S+GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/743 (35%), Positives = 446/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GRG  ++R
Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+ Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL ++ GD  
Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSYRAGDDY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F + ++P +S+GKG ++      + K G   ++ ++  K    L ++ S  R    
Sbjct: 657 RMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/750 (36%), Positives = 449/750 (59%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GGDIVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S++GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSDKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++     +  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + + K     +++     + +G +    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEMVSHLMSLPQGASVTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  GSL+P+G  R
Sbjct: 711 RKLGLKPADLDNFRGERGRRGSLLPRGLQR 740


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/743 (37%), Positives = 437/743 (58%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+ + +SL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A FKK
Sbjct: 9   ESDETISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTE
Sbjct: 69  SARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+T  +E++L  + +  V++   ++    EP V P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 129 SRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+ NP+ ++ +L+E+++ PD PT   I+ S + I   Y  GRG  R+R
Sbjct: 189 HNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTMYETGRGSLRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
             W     G+    IVVT +P+QV  ++++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 249 CIW-----GQEDGDIVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRL 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  + +NMN++ +  +P V PL+ IL EWL+ R   
Sbjct: 304 VIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPLNVILTEWLSFRMVT 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  + +R+ IL+G L A+LNIDE+I IIR EDKPK V++ RF +T+ Q +AI
Sbjct: 364 VRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKPKQVLMDRFGVTDIQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR + KLEE +I+ E D L  E E ++ +L S  +  N +  E++ + E +     
Sbjct: 424 LELKLRQIAKLEEIKIRGEQDELAKEGEWLEGILASATKLKNLVKKELQAIAEKY----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R +   V    +A  +  ++  +PITVV+S +GWIRS K H VD +AL +K GD+ 
Sbjct: 479 -GNDRRSPIVVRGEAQALSEMDLLTSDPITVVLSEKGWIRSAKGHDVDPAALSYKAGDAY 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             +    T    LL+ + G++Y L +  L S RG GE     ++           +    
Sbjct: 538 MFSAKGKTNQNALLIDSTGRSYALASHTLPSSRGQGEPASGRLNPPSGAVFTGLLMGVEK 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGENR 668
            ++L+ S  G  F+ E   +    + GK  L +    ++    ++  V   +VA      
Sbjct: 598 QRVLIASDAGYGFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADAYVAAASNEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF +  +PE++RGKG ++ S        ++  +  +      + LT + S  R    
Sbjct: 658 RLLIFPLSDLPELARGKGNKMLSIPGARVEAREEFVVSIAVIHSKQKLT-VYSGKRHTTF 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  + G+RG  G  +P+GF
Sbjct: 717 KMADLEHYKGERGRRGHKLPRGF 739


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/410 (58%), Positives = 311/410 (75%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I
Sbjct: 16  AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKI 75

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT 
Sbjct: 76  SGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTA 135

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VAE +L G++E+AVD+RD Y+    EP+V P+ FPNLLANG+SGIAVGMAT+IP HN+ E
Sbjct: 136 VAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGSSGIAVGMATNIPPHNISE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I ++YR GRG FR+R +W V
Sbjct: 196 LVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIAQAYRTGRGAFRLRCKWEV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E++GRG W IVVTEIPYQVQKS+L+EK+AE+I  K++P+L DIRDESA+DVR+VL P+++
Sbjct: 256 EDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILADIRDESADDVRMVLEPRSK 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++DP++LM  ++  SD+E RF LNMNVL  G  P+V  L  +L+ +L  RREVL RRS  
Sbjct: 316 NVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRREVLERRSRH 375

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RM  ID R+E+L+GL+ A+LN+D +I IIR +D PK  ++     T +Q 
Sbjct: 376 RMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVALMYEDWSTPHQA 425



 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/334 (48%), Positives = 223/334 (66%), Gaps = 10/334 (2%)

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILN+RLRSLR+LEE  +  E D L+ E+  ++ LL     QW+ I+ ++R+V
Sbjct: 484 LSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDAISEQLRQV 543

Query: 483 KEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           K+ F +       ++G RRT F E    ++  L+ AMI++EPITVV S  GWIR++  H 
Sbjct: 544 KKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPLE-AMIDREPITVVCSKMGWIRAMSGH- 601

Query: 538 VDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +DLS  L FK+GD  +   HA TTDR+L+  T+G+ YTL A NL  GRG GE ++L++DL
Sbjct: 602 IDLSRELKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPGGRGMGEPLRLMVDL 661

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            +  +IV  F++    KLLV SS G+ F+V E E++A TR GK  L V  + + K+  KV
Sbjct: 662 PNEAEIVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRDDVRAKVCTKV 721

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            GDHVA VGENRK+LIF++D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W D AG
Sbjct: 722 EGDHVACVGENRKVLIFALDELPEMGRGKGVRLQKYKDGGLSDATTFALADGLSWHDPAG 781

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+  RSE DL  W GKR   G + P+GFPR  +F
Sbjct: 782 RT--RSETDLAEWTGKRASAGRMAPRGFPRDNRF 813


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/701 (40%), Positives = 421/701 (60%), Gaps = 36/701 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 IAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+W +
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++
Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL       N+ A +
Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVV 654
              ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F+ + +       M ++ 
Sbjct: 610 GSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLP 669

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
             T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 670 NAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/701 (40%), Positives = 421/701 (60%), Gaps = 36/701 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 IAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+W +
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++
Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL       N+ A +
Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVV 654
              ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F+ + +       M ++ 
Sbjct: 610 GSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLP 669

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
             T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 670 NAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/712 (38%), Positives = 408/712 (57%), Gaps = 47/712 (6%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFK 73
           SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG       A   
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPNGATGARPV 79

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 80  KCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTE 139

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++  L++  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPS
Sbjct: 140 ARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +ALI  P++S E+L   I GPD+P GG I+ S   I  +YR GRG  +VR
Sbjct: 200 HNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRTGRGSLKVR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RI 295
           ARW +EE+ RG W +VV E+P  V   R++E+I E+   K                   +
Sbjct: 260 ARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQVQLKQSML 319

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +L+ +RDES++D  VR+V  PK        L+ ++   + +E+  P+NM ++ +   P 
Sbjct: 320 AVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTSLESSSPINMTMIGLDGRPT 379

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +L EW+A R+  + +RS  R+  +  R+ IL+G     LNIDE+IAIIR  D+P
Sbjct: 380 QKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIAIIRQSDEP 439

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  +++RFSL++ Q + IL +RLR L +LE  +I+ EL  L  E+ +++ +L       N
Sbjct: 440 KSALIARFSLSDRQAEDILEIRLRQLARLEAIKIEQELKTLREEQGRLEDILG------N 493

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             A     +KEI + +      R T  +   A+K ++ +  +  EP+TVV+S++GW+R+ 
Sbjct: 494 PTALRRLMIKEIEADAKQFADPRRTLIQ---AEKKSVLEVKVLDEPVTVVVSSKGWVRAR 550

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H    S+  FK GD+L       T D +L   ++G+ Y++P   L   RG G+ +  L
Sbjct: 551 GGHGHAPSSFAFKAGDALYGTFECRTVDTLLAFGSNGRLYSVPVAMLPGARGDGQPVTTL 610

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           IDL     ++  F   ++  LL+ SS G  F+     +++  R GK F+ ++  E +   
Sbjct: 611 IDLESGTQLLHYFAGPASAMLLLSSSGGYGFLATVENMVSRNRSGKAFITLAEGETLCRP 670

Query: 654 VKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             V+G           HVA     +++L F I +I +M + G+G+ L   +D
Sbjct: 671 SHVSGASGSQPLPPATHVACASTGQRILTFDIGEIKQMEKGGRGLMLIDLED 722


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/704 (40%), Positives = 420/704 (59%), Gaps = 36/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + S       M 
Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           ++   T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 443/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+ +I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  EE G     IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWN-EEDGD----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLKMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E D L  E++K++ LL S +++ N +       
Sbjct: 416 ISETQAEAILELKLRHLAKLEEFKLRAEQDELAIERDKLELLLGS-ERRLNTLL-----K 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KE+ + +   G  RRT   E + A  A  ++ +   EP+TV++S++GW+R+ K H VD++
Sbjct: 470 KELLADAEKYGDDRRTPLVERASA-VALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD         +  + + LST G+ Y L A  L S R  GE +     L   ++
Sbjct: 529 GLSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLPSARSQGEPLTGRFALGAGEE 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
           +    + +     L+ S  G  F+    ++I   + GK  L V  E  + +  +  G   
Sbjct: 589 VRHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTV-PEGGLVMAPQKIGSPE 647

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI 712
            D    +    ++L+F ++ +P + +GKG +L S     +       V+   I +G    
Sbjct: 648 TDLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFMVMAAIIPQGQYVT 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             AG R       DL  + G+RG  G+ +P+G  R
Sbjct: 708 LFAGKRKLTLKPADLDYYRGERGRRGAKLPRGLQR 742


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/735 (36%), Positives = 443/735 (60%), Gaps = 26/735 (3%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           RF  E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V
Sbjct: 5   RFT-EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDV 63

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE++++++AE
Sbjct: 64  LGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAE 123

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP HN+ E+ E
Sbjct: 124 VLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAE 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++RA W  E+ 
Sbjct: 184 ASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWKKED- 242

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319
                 IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RIVL P++  
Sbjct: 243 ----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPRSNR 298

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  + RR ++R
Sbjct: 299 IDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRRLNYR 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AILNLRLR L
Sbjct: 359 LDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAILNLRLRHL 418

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KLEE+++++E   L  E++++   L S ++    I  EI+   + F+       R +  
Sbjct: 419 AKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-----RHSPL 473

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD      +  +
Sbjct: 474 VERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGYLAHAYGRS 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              ++ L + G+AY L   +L S R  GE +   I L     +    + +S  K+L+ S 
Sbjct: 533 NQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSDTKVLMASD 592

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSID 676
            G  FI    ++++  + GK  + ++   K+   +L+       +  +    ++L+F I 
Sbjct: 593 SGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPIT 652

Query: 677 QIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R      +D+  +
Sbjct: 653 ELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITLKPSDIDNY 711

Query: 730 LGKRGGVGSLVPKGF 744
            G+R   GS + +G 
Sbjct: 712 RGERARKGSQLVRGL 726


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 283/750 (37%), Positives = 427/750 (56%), Gaps = 36/750 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 37  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 97  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+AL+DNPE+S  +L+ Y+ GPDFP GG I+   E I+ +Y  GRG  RVRA+W VE
Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDI 301
           ++ RG W ++VTE+P      +++ +I E    K                   + LL+ +
Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  D  VR+V  PK+   DPD  +  +   + +E    LN+ ++ +   P    L  
Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA RR  + RR   R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 456

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  LL +     + +   +
Sbjct: 457 AFGLTEVQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHLLATP----DALTGLM 512

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R+  EI + +   G  R +  E+  A++A L Q  I  EP+T+++S +GWIR+   H+VD
Sbjct: 513 RD--EIQADAAKYGDARRS--EIKAAERAVLTQT-IADEPVTIILSQKGWIRARVGHNVD 567

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LSAL FK+GD+L   +   T   +++L + G+AYT+    + +GRG G  +  L++L   
Sbjct: 568 LSALSFKDGDALATVVETRTVWPVIVLDSKGRAYTVDPAVVPTGRGDGVPVASLVELQDG 627

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      + + ++ +S G  FI +  ++    + GK F+ +   E +   + V   
Sbjct: 628 AKPAQLLSGPDSTRFVLANSGGYGFIAKIGDMAGRVKAGKAFMTLEDGESVLAPLHVPAS 687

Query: 660 ------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +    +N +LL F   ++ E+++G+G+ L    +G     I     +      
Sbjct: 688 AKLDALRLVAAADNGRLLAFPAGELKELAKGRGLMLMQLGEGEALTAIGLVGGDKAQLTA 747

Query: 714 SAGRSYNRSENDLLG-WLGKRGGVGSLVPK 742
            + R     E   L  + GKR   G L+PK
Sbjct: 748 QSVRGKQSEEKVALAEYDGKRARRGQLLPK 777


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 272/747 (36%), Positives = 447/747 (59%), Gaps = 22/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ ++  LL  + GPDFPT   I+  +E I + Y+ GR
Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIRKIYQQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  VRIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+L++
Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++  + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E + A KA  +  M+  EP+TV++S  GW+R  K H +D   L +
Sbjct: 477 YASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L   +L S R  GE +   + L     +   
Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATVDQL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAV 663
            + +    LL+ S  G  FI + ++++A  + GK  + +    K+   L +K     +  
Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-R 717
           +    ++LIF    +PE+S+GKG   V + S      S+++     I E  + +  +G R
Sbjct: 651 LTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/706 (37%), Positives = 412/706 (58%), Gaps = 37/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++AM  MGL   A   
Sbjct: 14  EDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYAMWRMGLTADAKPV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 74  KSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +A L+L  +D    DF   Y+   +EP + P++ P +L NG SGIAVGMAT IP+
Sbjct: 134 ARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGASGIAVGMATEIPA 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I  +Y +GRG  +VR
Sbjct: 194 HNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIAAAYAVGRGSLKVR 253

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----------------- 296
           ARW VEE+ RG W +V+ E+P+      ++E+I EL   K  P                 
Sbjct: 254 ARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKALAPEQIALKATLL 313

Query: 297 -LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            LL+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P+N+ ++     P+
Sbjct: 314 NLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVPINLVMIGTDGKPR 373

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+DE+I  IRN D P
Sbjct: 374 QKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNLDEVIETIRNSDDP 433

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  ++  LL   K    
Sbjct: 434 RPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTR 493

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I      + EI + +   G  R T  +   A++  + +  +  E +TV++S +GW+R  
Sbjct: 494 RI------ISEIEADAKQFGDDRRTLIQ---AEQRAVAEVKVVDEAVTVIVSQKGWLRVQ 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           K H + LSAL FK GD+L       + D +++L +DG+AY++   +L  GRG G+ +   
Sbjct: 545 KGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSMDVADLPGGRGDGQPVTSF 604

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-- 651
           I+L      +       T  LL+ +++G  F+   S+ ++  R GKTF+ +   + ++  
Sbjct: 605 IELAPGTQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRP 664

Query: 652 LVVKVTGD-----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           LV+    D      +A +  + +LL++   ++  ++R G+G+ L +
Sbjct: 665 LVLDTDADGSPVGRLATLSADGRLLLYPAAEVKTLARGGRGITLMA 710


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/737 (37%), Positives = 427/737 (57%), Gaps = 23/737 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ L+  A  KKS R V
Sbjct: 15  MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQNLYETGNGSVRTRATYHK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314
           E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +RDES     VRIVLF
Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +L EWL+ R + + R
Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ 
Sbjct: 370 RLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I        E+ + +   G 
Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD S + ++EGD L  A
Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMFYREGDRLLAA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +T ++  L ++G+AY+     L S RG+GE +                  D+    
Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLL 671
           ++ SS G  FI     +    + GK  + ++   +   +  +  V  D +  V     LL
Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVTSAGNLL 663

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727
             +  ++PE+ +GKG +L       ++    V    +    T +  +G R+   S  DL 
Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMRLSFKDLE 723

Query: 728 GWLGKRGGVGSLVPKGF 744
            +L  RG  G L+P+G+
Sbjct: 724 AYLDTRGSRGQLLPRGW 740


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/745 (37%), Positives = 433/745 (58%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI +AMSE+GL  GA +KK
Sbjct: 10  EGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAMSELGLHAGAKYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  V    VD+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 130 AKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+  A L LIDNP+  + +L+ Y+ GPD+PT   I+   + I + Y  G+G  ++R
Sbjct: 190 HNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIAKIYETGKGSIKMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + +E     S  IV++ +P+QV   +++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 250 AVFTIE-----SGDIVISALPHQVSGGKILEQIAAQMQAKKLPMVADLRDESDHENPTRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N++ +   PQV  L  IL EWL  R   
Sbjct: 305 VIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGLKKILSEWLVFRHST 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  FR+  +  R+ +L GLLIA+LNIDE+I IIRN D PK  ++SRF L+  Q +A+
Sbjct: 365 VRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPKAELISRFDLSVKQAEAV 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E   L  E+ K++ LL+S +    ++A  ++  KE+ + +  
Sbjct: 425 LELKLRHLAKLEEMRIRGEQGELNTERHKLEQLLSSDR----RLATLVK--KELIADAEK 478

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ ++  E +TVV+S +GW R  K H VD   L +K  D 
Sbjct: 479 FGDERRSPIIERKEA-KALTEKELMPNEAVTVVLSQQGWARCAKGHDVDAKGLSYKASDG 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            K A    +    + + + G+++ L A  L S R  GE +     L   +  V A + D 
Sbjct: 538 YKDAAEGRSNCPAVFIDSSGRSFALDAHTLPSARSQGEPLTTRFTLAAGKTFVHALMADD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGEN 667
           + + L+ S  G  FI + S++I+  + GK  L + +     + + V  +  DH  ++   
Sbjct: 598 SQQYLLSSDAGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATDHCLIISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-----ICEGLTWIDSAG-RSYNR 721
            ++LIF +  +P +S+GKG +L +     +     F      + EG +    AG R    
Sbjct: 658 GRMLIFPLSSLPLLSKGKGNKLMNIPSARVKSREEFVQMLTIVPEGQSVTLYAGKRKLTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
              DL  + G+RG  G  +P+G  R
Sbjct: 718 KPADLEHYKGERGRRGFKLPRGLQR 742


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N N + E+      L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 4   IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 60  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+ I  HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA +  E+       IV+T +PYQV  +R++E+IA  +  K++P++ED+RDE
Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q +AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + 
Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++ F        RR+    ++R D   L++  ++  EPITVV+S  GW+R+ K H VD  
Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K    A T  ++L    +GK Y+LP   L S RG GE   L   LN  + 
Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAEG 585

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656
           ++   +   +   K+L+ +  G  FI +  ++    R GK  +K+S    +   +L+   
Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709
               VA      +LLIFS++++PE+SRGKG +L S        ++  I D+      + L
Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDMQVLTTNDSL 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           T + +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 706 T-VYAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/704 (39%), Positives = 420/704 (59%), Gaps = 36/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  F      +LL+ SS G  F+ +  ++++  + GK F+ + +       M 
Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           ++   T   VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 290/753 (38%), Positives = 440/753 (58%), Gaps = 38/753 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEISAAYETGRGSLKVRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N  
Sbjct: 436 ALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NDS 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651
           L     ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F+ + +       M 
Sbjct: 607 LESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMP 666

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
           ++   T   VA +    +LL+F +D++  +S  G+GV L +  D   + V    I     
Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKE-TLVQALAIDPAGV 723

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +   GR   ++++D L + G    +G    KG
Sbjct: 724 VLIGTGRG-GKAQDDTLSYAGLAPHIGKRARKG 755


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/744 (36%), Positives = 444/744 (59%), Gaps = 25/744 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ V+ ++L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A  K
Sbjct: 9   EDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKNSAKHK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G+ D   S AA RYT
Sbjct: 69  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPKSFAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R++  AE++L  + +  VD++  ++    EPV+ P++ PN+L NG +GIAVGMAT IP
Sbjct: 129 ESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNGATGIAVGMATDIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A + L+ +P  S++ L E + GPDFPT   I+  R  ++  Y  GRG  ++
Sbjct: 189 PHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHELIRMYATGRGSIKM 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA +  E    GS  IV+T +P+QV  +R++E+IA+ + AK++P+++D+RDES  +   R
Sbjct: 249 RAVYTRE----GS-DIVITALPHQVSGARILEQIAQQMNAKKLPMVQDLRDESDHENPTR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+ P++  +D + LM  +F  +D+E  + +NMN++ +   P+V  L  IL EWL  R  
Sbjct: 304 LVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGLYDILSEWLEFRIT 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  +R+  +  R+  L+GLLIA+LNIDE+I IIR ED PKP ++ RF +++ Q +A
Sbjct: 364 TVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDPKPRLMERFGISDIQAEA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+LR L KLEE +I+ E   L  E++ ++S+L S ++  N+I  E+    E +  + 
Sbjct: 424 ILELKLRHLAKLEEMKIRGEQAELEKERKDLESVLGSAQKLKNKIVKELEADIERYGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RR+   E   A +A  +  ++  EP+TV++S +GW+R+ K H +D + L +K GD+
Sbjct: 483 ----RRSPLIEREEA-RAMDETELVGAEPVTVILSQKGWVRAAKGHDIDAAGLSYKTGDA 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L       +   ++ + + G++YTLPA  L S RG GE +   +            +   
Sbjct: 538 LLGIAQGKSNQTVIFIDSTGRSYTLPAHGLPSARGQGEPLIGKLTPPPGASFEALLMGAD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667
             + L+ S  G  F+++ S+     + GK  L V    K+    KV+    ++VA V  +
Sbjct: 598 HDRYLLASDAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDREYVAAVAND 657

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYN 720
            +LL+F + ++PE++RGKG ++          ++  + DV+     + L  I S  R   
Sbjct: 658 GRLLVFPLKELPELARGKGNQMMGIPSAKAKAREEYLVDVLLMTEADQL-LICSGKRQLT 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744
              +DL  +LG+RG  G+ +P+GF
Sbjct: 717 MKFSDLQHYLGERGRRGNKLPRGF 740


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/731 (37%), Positives = 438/731 (59%), Gaps = 19/731 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL + +  KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWTSKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA RYTEA+++Q +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EPV  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP ++ EK+ EYI  PD PT   I+     +++    GRG +R+RA + V++     
Sbjct: 199 LIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRGSYRMRAVYSVDKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  A   R+V+  ++  +D +
Sbjct: 256 --IIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHANPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+  R+  + RR  + +  I
Sbjct: 314 SVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKTTVTRRLQYHLNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GL+IAYLNIDE+I IIR ED+PKPV++ RF++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILGGLIIAYLNIDEVIQIIREEDQPKPVLMQRFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +++ E + L A+   I   L + +   + I  E+++  + F        RR+    V 
Sbjct: 434 EMEMRREQEELEAKAAVIREQLANPESLKSLIISELKDDAKKFGDD-----RRSPI--VQ 486

Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+ A + +  M+  +P+TVV+S  GWIR  K H VD   L+F+ GD         +  R
Sbjct: 487 RAEAAVINETEMLPADPVTVVLSEAGWIRCAKGHEVDAENLNFRAGDQYLSHAQGKSNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + +L   G++Y L    L S RG GE +   +            V +   ++L  S+KG 
Sbjct: 547 VYVLDDTGRSYALAINTLPSARGLGEPLSSKLSPGSGVGFKQVLVAEDETEILAASNKGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  + + GK FL +S   E M L       HVA++    +LLI  + ++P +
Sbjct: 607 GFKTQAKQLDTSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVL 666

Query: 682 SRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           ++GKG +L   +DG  I  +   K+ E +  + +  +      +DL  ++GKRG  G L+
Sbjct: 667 NKGKGNKLIQLEDGDQILSMTLLKLDE-IIQVLAGQQQLKLKGDDLRKYIGKRGAKGQLL 725

Query: 741 PKGFPRSGKFL 751
           P+G+ ++ K L
Sbjct: 726 PRGYQKANKLL 736


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/733 (37%), Positives = 443/733 (60%), Gaps = 24/733 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KKSAR VG+VIGK
Sbjct: 15  VEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSARTVGDVIGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
            HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA RYTE+R+T  A+ +L
Sbjct: 75  YHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRLTGYAKTLL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +++  V++   ++    EP   P++ PN+L NG SGIAVGMAT++  HN+ E+  A  
Sbjct: 135 AELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNLGEVVAACR 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALI +P ++ + L++YI  PDFPTGG +V +RE I   YR GRG  R+RA W +E+    
Sbjct: 195 ALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATWHLEDGN-- 252

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDP 322
              I++ ++PYQV  S++ E+IA+ + AK++  LED+RDES  +  +R+VL P++  +D 
Sbjct: 253 ---IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRSNRVDH 309

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           + LM+ +F  +D+E R+   MN++ +   PQV  L  IL+EWL +R E + RR + R+ A
Sbjct: 310 ERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRRRLNHRLHA 369

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           ++ R+ IL+GLLIAYLN+DEII IIR ED+P+PV+++ F+L+E Q +AILN RLR L +L
Sbjct: 370 VNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNTRLRHLARL 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           EE QI++E + L AE++ +  LL S ++    IA E+      +  +     RRT   E 
Sbjct: 430 EEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDA-----RRTVIIE- 483

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             A  A  +  +   E +T+++S  GWIR  K H++D +AL +K GD+    +   +  +
Sbjct: 484 REAAVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQISGRSNQQ 543

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
             LL+ +G++YTL    L S R +GE +   + ++ +  I+ A + +   + L+ +  G 
Sbjct: 544 ACLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRYLIAADNGY 603

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            F++  +E+ + T+ GKT +      +   ++ +     D +A+  E R  LI + ++IP
Sbjct: 604 GFLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPA-EEIP 662

Query: 680 EMSRGKG-----VRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKR 733
           E+++GKG     +  ++Y   GI       +  G    + S  +      N+   +L  R
Sbjct: 663 ELAKGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPR 722

Query: 734 GGVGSLVPKGFPR 746
           G  G+ +PK + R
Sbjct: 723 GHKGNWLPKNYRR 735


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/706 (39%), Positives = 419/706 (59%), Gaps = 36/706 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRAR
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297
           W +EE+ RG W +VVTE+P      +++E+I EL   K                   + L
Sbjct: 256 WKIEELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR+ D+PK 
Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRDADEPKA 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K++ LL       N+ 
Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A +   +KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK 
Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-- 653
           L     ++  +      +LL+ SS G  F+ +  ++++  + GK F+ + +      V  
Sbjct: 607 LESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPL 666

Query: 654 ----VKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               V      VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 667 APMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 712


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/751 (37%), Positives = 436/751 (58%), Gaps = 46/751 (6%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +SLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A FKKSAR
Sbjct: 12  ETLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
            VG+VIGK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYTE+R+
Sbjct: 72  TVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSPDDPKSFAAMRYTESRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A+++L  + +  VD++  ++    EP+V P++ PNLL NGT+GIAVGMAT IP HN+
Sbjct: 132 TRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGTTGIAVGMATDIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A + L++ P   +E L + I GPDFPT   I+  R  I   Y+ GRG  ++RA W
Sbjct: 192 REVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEISAMYKTGRGSLKMRAAW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
            VE+       +VV  +P+QV  S+++E+IA  + A+++P++ D+RDES  +   R V+ 
Sbjct: 252 RVED-----GAVVVHALPHQVSGSKVLEQIAAQMQARKLPMVADLRDESDHEHPTRFVVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D D LM  +F  +D+E  + +N+NV+ +   P V  L  IL EWL  RR  + R
Sbjct: 307 PRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSLATILLEWLEFRRTTVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R++ + +R+ IL+G L+AYLNIDE+I I+R ED+P+P +++RF LTE Q DAIL+L
Sbjct: 367 RLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPALMARFQLTELQADAILDL 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG- 493
           +LR+L KLEE +I+ E + L  E++ +   L S  +    I       KE+ S + D G 
Sbjct: 427 KLRNLAKLEEMKIRGEQNELAEERDDLQKTLGSDARLKTLIK------KELESVANDHGD 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RR+   E   A KA  +  +   +P+T+V+S +GWIR+ K H +D  AL +K GD  K+
Sbjct: 481 DRRSPIVEREEA-KAFSELELTTADPLTIVLSEKGWIRAAKGHDIDPEALSYKSGDGFKL 539

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A    +    ++  + G++Y+LP+  L S RG GE +   I+                 +
Sbjct: 540 AAKGRSNQPTVVFDSTGRSYSLPSHQLPSARGQGEPLTGRINPPSGATFEALLTGVDADR 599

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL------------KVSSEEKMKLVVKVTGDHV 661
            L+ S  G  F+   +++    + GK  L             V S ++  +V  VT +  
Sbjct: 600 YLLASDAGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEG- 658

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWID 713
                  +LL+F +  +PE+SRGKG         R  + ++  +  V+   +   +  I 
Sbjct: 659 -------RLLVFPLTDLPELSRGKGNKIIGIPTPRAAAREELMVGAVVL--VPGNVLQIT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +  R      +DL  + G+RG  G+ +P GF
Sbjct: 710 AGKRHLKLKFSDLEHYRGERGRRGNKLPNGF 740


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/687 (38%), Positives = 425/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++++GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/676 (38%), Positives = 426/676 (63%), Gaps = 16/676 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR 
Sbjct: 8   SISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSKYKKSART 67

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+ D   S AA RYTE+++T
Sbjct: 68  VGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLT 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A L++  +    VD++  ++    EPV+FP+K P +L NGTSGIAVGMAT IPSHN+ 
Sbjct: 128 NFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATDIPSHNIN 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A + +++ P+  ++ LL+ I GPDF     IV S E + E Y  GRGGF+++A+W 
Sbjct: 188 EVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGFKIQAQWM 247

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            ++       I++  +PYQ   S+++E+IAE +I K++P++ D+ DE   +  +R+V+  
Sbjct: 248 QDKN-----QIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDPIRLVITL 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+  ++ + +M  ++  +D++  + +NMN++S+   P+V  L  +LKEW+  R++ L R+
Sbjct: 303 KSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFRKDTLKRK 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              R+  ++ R+ IL+GLL  ++++D++I IIRN D+PK  ++  F L+E Q +AIL +R
Sbjct: 363 LEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEPKKELIKAFKLSEIQANAILEIR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLE+ +I++E + L+ E++ I+ +L S  +    I  E+ E+KE+F      G  
Sbjct: 423 LRQLAKLEQLKIENERNELVNERDDIEKILKSKSRLKTLIKNELNEIKELF------GEE 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R +    S   K   ++  I  EPITVV+S  GW+RS K H +D + L ++  DSL+   
Sbjct: 477 RKSPIINSTNAKIFSEEETIVTEPITVVLSKAGWVRSAKGHEIDPNTLSYRGDDSLQDFA 536

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +    + L ++GKAY++ + +L S RG GE I   ++ +     +++ +     K L
Sbjct: 537 RGRSNQLAIFLDSNGKAYSIQSHSLPSARGMGEPITGRLNADSGVQFISSVIGVEGNKFL 596

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           ++++ G  +I E   +I+N + G+ F+K+    KM   + VK    H+A V    KLLIF
Sbjct: 597 IMNTAGYGYISEYQNMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSNIGKLLIF 656

Query: 674 SIDQIPEMSRGKGVRL 689
           +I+++P + +GKG ++
Sbjct: 657 NIEELPILGKGKGNKI 672


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D   
Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/742 (37%), Positives = 439/742 (59%), Gaps = 24/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDPKTELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L++K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESEMTPAEPVTVILSEMGWVRCAKGHDIDPKSLNYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +      +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 RAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMAGEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   +A+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVIAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD--VICFKIC----EGLTWIDSAGRSYNRS 722
            +LIF    +P +S+GKG ++ +       D   +  K+     +      S  R     
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKIITIPAANAKDRSELLIKLLLISDQASLEFHSGKRKIVLK 714

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
             DL  +  +RG  GS +P+G 
Sbjct: 715 PEDLQKFRAERGRKGSTLPRGL 736


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 420/693 (60%), Gaps = 36/693 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL   A   KSAR+VG+V+GK 
Sbjct: 28  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+ E  EP + P++ P +L NG SGIAVG+AT IPSHN++E+  AA+A+
Sbjct: 148 INQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP++   +L++YI GPDFP GG I+ S   I  +Y  GRG  +VRARW +EE+ RG W
Sbjct: 208 IRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIEELARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 268 QLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAVRDESGKD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK +++ LL S      + A +   +KEI 
Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGS------ESAMKRLLIKEIE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLMHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662
              +   LL+ SS G  FI +  ++++  + GK+F+ + +  +    M ++   T  H+A
Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDAT--HIA 676

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  N +LL+F +D++  +S  G+GV L +  D
Sbjct: 677 CLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDD 709


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/700 (39%), Positives = 411/700 (58%), Gaps = 30/700 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   
Sbjct: 11  EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 71  KSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP 
Sbjct: 131 ARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGIAVGMATEIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +VR
Sbjct: 191 HNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIYEGGRGSLKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295
           ARW +EE+ RG W +VVTE+P      +++E+I E+                  + A  +
Sbjct: 251 ARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQDQQQLKATVL 310

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +L+ +RDES +D  VR+V  PK++++     + ++   + +E+  P+N+ ++     P+
Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINLVMIGTDGRPR 370

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I IIR  D+P
Sbjct: 371 QKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           KP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S      
Sbjct: 431 KPALIEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRR 490

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +GW+R+ 
Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVIDEPVTVVMSQKGWVRTR 545

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G  I  L
Sbjct: 546 QGHGHDAQQFTFKAGDALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGDGVPITTL 605

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L     +   F   +  ++L+ ++ GN F  +  ++I+  + GK+FL +   +   L 
Sbjct: 606 IELQSGSQVAHTFAGSAEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGD-TPLA 664

Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
               GD   HVA +  N +LL+ ++D++  +S  G+GV L
Sbjct: 665 PAPIGDEATHVACLSGNGRLLLVALDEVKVLSAGGRGVIL 704


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/764 (36%), Positives = 451/764 (59%), Gaps = 33/764 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+++S   VE      SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE
Sbjct: 3   DNLADSLDGVERR----SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GLD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D 
Sbjct: 59  LGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDD 118

Query: 124 -DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+G
Sbjct: 119 PKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTG 178

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ 
Sbjct: 179 IAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKM 238

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLED 300
           Y  G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA L+ AK  + P + D
Sbjct: 239 YETGKGSVRMRAVYHVED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIAD 293

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES  +   RIV+ P N  +D + LM+ +F  +++E+ + +N+N++ +   PQ+  L 
Sbjct: 294 LRDESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLKNLR 353

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  ++
Sbjct: 354 ALLVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAKLI 413

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL+S  +    +  E
Sbjct: 414 ERFALSEIQADYILDTRLRQLARLEEMKLRDEQDELLKEQAKLQALLSSEAKLKKLVRSE 473

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + +  E +        RR+   E + A KA  +  ++  E +TVV+S +GWIRS K H +
Sbjct: 474 LLKDAETYGDD-----RRSPIVERAEA-KALTEHDLLPNEKVTVVLSEKGWIRSAKGHEI 527

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D + L +K GD  K +    +    +++ + G++Y+L    L S RG GE +   +    
Sbjct: 528 DATGLSYKAGDGFKTSAAGRSNQSAVVIDSTGRSYSLATHTLPSARGQGEPLTGRLTPPP 587

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVK 655
                   + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+   + V  
Sbjct: 588 GATFECVLMPEEDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVAD 647

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEG 708
              + +A V    +LLIF I  +P++ +GKG ++        + ++  ++D+    + EG
Sbjct: 648 REHNWLASVTTEGRLLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEG 705

Query: 709 LTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            T +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 706 ATLVLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D   
Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D   
Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKEALVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/743 (35%), Positives = 446/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GRG  ++R
Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+ Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL ++ GD  
Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPIEDVTVILSEKGWVRCAKGHDIDVQALSYRAGDDY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F + ++P +S+GKG ++      + K G   ++ ++  K    L ++ S  R    
Sbjct: 657 RMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D   
Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           VA +    +LL+F +D++  +S  G+GV L +  D   + V    I      +   GR  
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732

Query: 720 NRSENDLLG 728
              E  L G
Sbjct: 733 KAQEEALAG 741


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++ S  
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASS-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +L+F    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLLFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/693 (39%), Positives = 418/693 (60%), Gaps = 36/693 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL   A   KSAR+VG+V+GK 
Sbjct: 28  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLAE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+ E  EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A +A+
Sbjct: 148 IDQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAATVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP+I+  +L+E++ GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W
Sbjct: 208 IRNPKITHAELMEHVPGPDFPGGGQIISSEAEISAAYETGRGSLKVRARWKIEDLARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQGKQTMLGLLDAVRDESGKD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LNM ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNMVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK K++ LL S      + A +   +KE+ 
Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEVE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +    +K    +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 502 ADAKQYGDERRTLIQ---QEKRATYEARVVDEPVTVVVSQKGWVRALKGHGLDTAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDSL  A    T D ++   ++G+ Y++   +L  GRG G  +  LI++     ++  +
Sbjct: 559 AGDSLYAAFQCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIEMESGSHLMHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662
              +   LL+ SS G  FI +  ++++  + GK+F+ + +       M ++   T   VA
Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAT--QVA 676

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
            +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 677 CLSSAGRLLVFGIDEMKTLSGGGRGVTLMALDD 709


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 279/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++ S  
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASS-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/692 (40%), Positives = 415/692 (59%), Gaps = 33/692 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ 
Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F 
Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
           +  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D   
Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691
           VA +    +LL+F +D++  +S  G+GV L +
Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMA 705


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/696 (39%), Positives = 412/696 (59%), Gaps = 37/696 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  + E  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI NP++   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +EE+ 
Sbjct: 203 AVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEELA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLAAILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++  F 
Sbjct: 383 EWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALIGAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T   + +  +AT +  ++++  +TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQFGDERRTL--IQQEKRATFETKVVDEP-VTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKV 656
           +  F   +   LL+ SS G  FI +  ++++  + GK+F+ +       +     + V  
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLP 673

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQS 691
               VA +    +LL+F ID++  +   G+GV L +
Sbjct: 674 AASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMA 709


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/746 (35%), Positives = 443/746 (59%), Gaps = 25/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+ +A +AL+D P ++++ ++ ++ GPDFPT   I+ SR+ I + Y+ GRG  
Sbjct: 184 IPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+A+R
Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIAYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PK V++SRF++++ Q 
Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAVLMSRFNISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++ + ++L S ++    I       KEI + 
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDDLQAILGSERRLNTLIK------KEIQAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           + D G  R +        KA  +  ++  EPITVV+S+ GW+RS K H ++ + L++K G
Sbjct: 473 AKDYGDDRRSPLHEREEAKAMSEHEILPSEPITVVLSDMGWVRSAKGHDIEPTNLNYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D  K A    +    + L T G++Y++    L S R  GE +   + L     I    + 
Sbjct: 533 DGFKGAARGKSNQAAVFLDTTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
               K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  + 
Sbjct: 593 PDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  ++LIF +  +P++S+GKG ++        +  D  ++ ++   +   +T +    R 
Sbjct: 653 KAGRMLIFPVADLPQLSKGKGNKIINIAGTQAATGDDLLTWLMILPVGASMT-LHFGKRK 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DL  +  +RG  G+ +P+G 
Sbjct: 712 LKFKAEDLQKYRSERGRKGTSLPRGM 737


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/662 (38%), Positives = 412/662 (62%), Gaps = 20/662 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SI 675
            +
Sbjct: 656 PV 657


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/735 (37%), Positives = 427/735 (58%), Gaps = 21/735 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P L DG KPV RRII++MSE+GL+  A  KKSAR V
Sbjct: 15  IPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSMSELGLNAAAKPKKSARTV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 IAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+D+P+ ++  L E++ GPD+PT   I+ S   +   Y  G G  R RA W  
Sbjct: 195 IVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLRAMYENGTGSVRARATWQK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316
           E     +   VVT +PYQV  S++IE+IA  +  K++P LEDIRDES  A  VR+VL P+
Sbjct: 255 E-----NGNFVVTALPYQVSPSKVIEQIAAQMRTKKLPWLEDIRDESDHANPVRVVLVPR 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L EWL  R + + RR 
Sbjct: 310 SNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNLRTLLDEWLTFRTDTVVRRL 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R + ++RR+ +L+GLL+A+LN+DE+I IIR ED+P+P +++RF LT  Q D IL  RL
Sbjct: 370 KHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPALIARFGLTGEQADYILETRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L +LEE +I+ E D L  E E+I + L+S K +  ++  +     E+ + +   G  R
Sbjct: 430 RQLARLEEMKIRGEQDELARELERIVATLDS-KARLKKLVKD-----ELLADAKKFGDAR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +   +  A  A  +  ++  EP+TVV+S +GW+R+ K H VD + L ++EGD+L  A+ 
Sbjct: 484 RSPLVLREAAHAIDETELVPSEPVTVVLSQKGWVRAAKGHDVDAAGLSYREGDALLGAVR 543

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A +T ++  L + G++Y+ PA +L S RG+GE +            +     ++  + ++
Sbjct: 544 ARSTWQVAFLDSHGRSYSTPAHSLPSARGNGEPLTGRFSPASGASFLALASGENDTRFVL 603

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            SS G  F+     +    + GK  + +++   +    +V     D +  V     LL  
Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETDRIVAVTSAGHLLAI 663

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGI-SDVICFKICEGLT---WIDSAGRSYNRSENDLLGW 729
              ++PE+ +GKG +L       + ++ +      G      + S  R+   S  DL  +
Sbjct: 664 PAAELPELDKGKGNKLIDIPRAKLGTERVVAVAAVGPAQKLQVYSGQRTMTLSFKDLDTY 723

Query: 730 LGKRGGVGSLVPKGF 744
           LG R   G L+P+G+
Sbjct: 724 LGARATRGGLLPRGW 738


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/696 (39%), Positives = 412/696 (59%), Gaps = 37/696 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+VG+V
Sbjct: 24  RYA-ESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARVVGDV 82

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L
Sbjct: 83  LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQL 142

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  + E  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+  A
Sbjct: 143 LLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+ALI NP++   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +EE+ 
Sbjct: 203 AVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEELA 262

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P      +++E+I EL   K                   + LL+ +RDE
Sbjct: 263 RGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDAVRDE 322

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  IL 
Sbjct: 323 SGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLAAILG 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++  F 
Sbjct: 383 EWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALIGAFG 442

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL       N+ A +   +
Sbjct: 443 LTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T   + +  +AT +  ++++  +TVV+S +GW+R+LK H +D ++
Sbjct: 497 KEIEADAKQFGDERRTL--IQQEKRATFETKVVDEP-VTVVVSQKGWVRALKGHGLDPAS 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     +
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKV 656
           +  F   +   LL+ SS G  FI +  ++++  + GK+F+ +       +     + V  
Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLP 673

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQS 691
               VA +    +LL+F ID++  +   G+GV L +
Sbjct: 674 AASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMA 709


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/688 (37%), Positives = 420/688 (61%), Gaps = 21/688 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ ++++L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +EI +A   L+DNP+  +  +++Y+ GPD+PT   ++ + E I + Y+ GRG  
Sbjct: 184 IPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE      C V+T +P+QV  ++++E+IA L+ AK++PL++D+RDES  +  
Sbjct: 244 RMRAVWQKEE-----GCAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R + R++ + RR+EILKGLLIAYLNIDE+I IIR ED+PK  ++ RF+L++ Q 
Sbjct: 359 RQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEPKAELMRRFALSDIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL LRLR L KLEE ++++E D L  E++ I+ LLNS ++    +       KEI + 
Sbjct: 419 EAILELRLRHLAKLEEIKLQAESDELEKERDSIEKLLNSPRRLNTLLK------KEIEAD 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           + + G  R +        K   +Q M+  EP+T+V+S  GW+RS K H +D S + ++ G
Sbjct: 473 AKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIVLSEMGWVRSAKGHEIDPSTMSYRAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A+   +   +L L + G++Y+L   ++ SGR  GE +   +    +  +      
Sbjct: 533 DSYHSAVRGMSNQPVLFLDSTGRSYSLSPNDMPSGRSQGEPLTGKLTFPPDASVKYMLAG 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------VA 662
            +  + L+ + +G   ++   E+    + GK  L VS E ++     V  +       + 
Sbjct: 593 AAKQEYLLATKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLV 652

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRL 689
           ++ +  ++L  S + + EM+ +G+G RL
Sbjct: 653 IITDKTRILAISAEHLNEMNKKGRGTRL 680



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +  E +TV++S +G IR  K H++D  ++ FK GD    A+   +   + L+ T G++YT
Sbjct: 736 LHPEAVTVIMSEKGLIRCQKGHNIDAKSVGFKTGDDYFDAVEGMSNQAVHLIDTTGQSYT 795

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +    L SGR  G+ +   + +     +    + +S+ K+L+ S  G  FI    ++ + 
Sbjct: 796 VDVDALPSGRSKGDDLTGRLKVQKGAQLRHVVMGESSDKILMASDAGYGFICSIDDLTSK 855

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVA----VVGENRKLLIFSIDQIPEMSRGKGVRL- 689
            R GK+ L +  E  + L  +   D ++    ++ +  ++LIF   ++P M +GKG ++ 
Sbjct: 856 NRAGKSLLTL-PENALPLPPQRLNDELSDLIMIITQGGRMLIFEASELPTMVKGKGNQMV 914

Query: 690 ---QSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
               S    G   V   ++        +    R    S N+L  +  KRG  G+ +P+G
Sbjct: 915 SIPASQAASGEDKVAWLRVLPENASVTLHFGKRKLTMSMNELQTFKAKRGRRGTSLPRG 973


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/662 (38%), Positives = 412/662 (62%), Gaps = 20/662 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W 
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++   + +        R
Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+
Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   ++ + + G++Y +    L S RG GE +   + L     +    +     KLL
Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673
           + S  G  F+   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F
Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655

Query: 674 SI 675
            +
Sbjct: 656 PV 657


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/687 (38%), Positives = 424/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++++GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 428/737 (58%), Gaps = 23/737 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ L+  A  KKS R V
Sbjct: 15  MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314
           E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +RDES     VRIVLF
Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +L EWL+ R + +  
Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTH 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ 
Sbjct: 370 RLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L +LEE  I++E D L  E+++I+ +L+S  Q    I        E+ + +   G 
Sbjct: 430 KLRQLARLEEMAIRNEQDALTKERDEINVILDSDIQLKKLIK------DELLADAKTFGD 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD S + ++EGD L  A
Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHEVDPSGMSYREGDRLLAA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +T ++  L ++G+AY+     L S RG+GE +                  D+    
Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLL 671
           ++ SS G  FI     +    + GKT + ++   ++  +  +T    D +  V     LL
Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVRHDRIVAVTSAGNLL 663

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727
             +  ++PE+ +GKG +L       ++    V    +    T +  +G R+   S  DL 
Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMRLSFKDLE 723

Query: 728 GWLGKRGGVGSLVPKGF 744
            +L  RG  G L+P+G+
Sbjct: 724 AYLDTRGSRGHLLPRGW 740


>gi|332290089|ref|YP_004420941.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
 gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/727 (36%), Positives = 439/727 (60%), Gaps = 22/727 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +A + L++NP+ S
Sbjct: 121 YQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++++L+ +  PDFPT   I+  +E + + Y  G+G  ++RA W  E+       IV+T +
Sbjct: 181 MDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKED-----GEIVITAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           PYQ   +++IE+IA  +  K++P+++DI+DES  +   R+V+ P++  +D + LM  +F 
Sbjct: 236 PYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL+ RR+ + RR  +R+  +  R+ IL 
Sbjct: 296 TTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILD 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLLIA+LNIDE+I IIRNED+PK  ++SRF+L+E Q +AILNLRLR L KLEE ++++E 
Sbjct: 356 GLLIAFLNIDEVIHIIRNEDEPKQELMSRFALSEEQAEAILNLRLRHLAKLEETELRAEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E+++++ +L+S K     I  EI +  + ++       R +   E   A KA  +
Sbjct: 416 KQLEQERKQLEKILSSDKNLNQLIKKEIEQDAKTYASP-----RLSKIVEREEA-KAISE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            A++  EP+TV++S  GW+R  K H +D  +L +K GD+    +   +  +++ L + G+
Sbjct: 470 SALVPVEPVTVILSEMGWVRCAKGHDIDPQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y+L   +L S R  GE I   + L     I    +  +   LL+ S  G  F+    ++
Sbjct: 530 SYSLDPLSLPSARSQGEPITGKLTLPAGAMIEQLLMPKAEQALLMASDAGYGFVCNAEDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG--ENRKLLIFSIDQIPEMSRGKG--- 686
           I   + GK  + +    K+   V +    V +V      K+L+F + ++P++S+GKG   
Sbjct: 590 ITRNKAGKAAISLPENAKVLPPVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKI 649

Query: 687 VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKG 743
           + + + K     +++   F I EG + I  +G R       ++  + G+RG  G+ +P+G
Sbjct: 650 INIPAAKAKAREELLVRLFVIEEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRG 709

Query: 744 FPRSGKF 750
              S + 
Sbjct: 710 VQHSAEI 716


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/744 (36%), Positives = 433/744 (58%), Gaps = 27/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L+   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+GL   + +KK
Sbjct: 9   EGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGLSAASKYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++  A+L+L  + +  VD+   ++    EP V P++ PN+L NG +GIAVGMAT IP 
Sbjct: 129 SRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+DNP  S+  L E+I GPDFPT   I+  R  + + Y  G GG R+R
Sbjct: 189 HNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGGLRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+  E        I++T +PYQV  S+++E+IA  + AK++P++ED+RDES  +   R+
Sbjct: 249 ARYEREGTD-----IIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEHPTRL 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  +L EWL  R E 
Sbjct: 304 VIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLGEWLHFRTET 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR  D+PKPV++ RF LT+ Q +AI
Sbjct: 364 VRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPVLMERFGLTDTQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E D L  E++ ++  L S  +    I  EI+   E F     
Sbjct: 424 LELKLRHLAKLEEMKIRGEQDELEKERDSLEKTLGSAARLKRLIREEIQADAEKF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R +      A +A  +  ++  EP+TVV+S  GW+R+ K H VD   L +K GD+ 
Sbjct: 479 -GDERRSPIVARAAAQAMDESELVPTEPLTVVLSKMGWVRAAKGHDVDAEGLSYKSGDAF 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A    +    + + + G+ YTLPA  L S RG GE +   +        V   +   +
Sbjct: 538 LSAARGRSNQPAVFIDSTGRTYTLPAHTLPSARGQGEPLSGRLSPPDGARFVGVMMGAPS 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668
              L+ +  G  F+    ++ +  + GK  L V +  K+   V+V     D +A      
Sbjct: 598 DLFLLSTDYGYGFVCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            LL+  ++++P M+RGKG ++ +        ++  ++ +   +  E LT +  AG+ +  
Sbjct: 658 HLLVTRLNELPRMARGKGNKIINVPSAKLKTREEWVAAITLVQDGEPLTVV--AGKKFKT 715

Query: 722 SEN-DLLGWLGKRGGVGSLVPKGF 744
            +  ++  +  +RG  G  +P+GF
Sbjct: 716 MKGPEVDEYAAERGKRGKKLPRGF 739


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/743 (35%), Positives = 445/743 (59%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GRG  ++R
Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+ Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + + KA  +  +   E +TV++S +GW+R  K H +D+ AL  + GD  
Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSHRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ L + G+AY L   +L S R  GE +   I L     +    +    
Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAVVQQVLMASPE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI   +++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F + ++P++S+GKG ++      + K G   ++ ++  K    L ++ S  R    
Sbjct: 657 RMLVFPVSELPQLSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDVDNYRGERARKGSQLVRGL 738


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/699 (40%), Positives = 418/699 (59%), Gaps = 32/699 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++L+L  +D+  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI +P ++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEISTAYESGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W +VVTE+P      +++E+I EL   K                   + LL+ 
Sbjct: 259 EDLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES ++  VR+V  PK+R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++
Sbjct: 379 TILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL       N+ A +
Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G  R T   + +  +AT  +A +  EP+TVV+S +GW+R+LK H +
Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D +   FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656
              ++  F   +  +LL+ SS G  F+ +  ++++  + GK F+ +   +     + V  
Sbjct: 610 GTHLMHYFAASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLP 669

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               VA +    +LL+F +D++  +S  G+GV L +  D
Sbjct: 670 NAKQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/731 (37%), Positives = 435/731 (59%), Gaps = 20/731 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD++D ++    EP+  P++ PN+L NGT GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPE + EKL EYI  PD PT   I+  ++ +++    GRG +R RA + +++     
Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRARAVYHIDK----- 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES      R+V+  ++  +D  
Sbjct: 254 NEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTRLVIVLRSNRVDAA 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+ET + +N+N++     PQV  +  IL EW+  R+  + RR  + +  I
Sbjct: 314 AVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIEIRKTTVTRRLQYHLNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 374 EKRLHILAGLLIAYLDIDTVIKIIREEDQPKPVLMQHFNIDEIQAEAILELKLRHLAKLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I+ E + L A    I   L + +   N I  E++E  + F        RR+   +  
Sbjct: 434 EMEIRREQEELEARAAVIREQLGNPESLKNLIINELKEDAKKFGDD-----RRSPIVQRE 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            A +   +Q ++  E +TVV+S  GWIRS K   VD   L+++ GD  +      +  R+
Sbjct: 489 EAVQIR-EQDLLPAETVTVVLSEAGWIRSAKGE-VDAENLNYRAGDQYQSHAIGKSNQRV 546

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            +L   G++Y L  GNL S RG GE +   +   +    +  ++ D   +L+ VS  G  
Sbjct: 547 YVLDETGRSYALSIGNLPSARGLGEPLSSKLSPANGVSFIQVYINDEESELIAVSDAGYG 606

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           F  +  ++  N + GK FL V    K + L+      H+A++  + +LLI  + ++P ++
Sbjct: 607 FKTQTKQLDTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPILN 666

Query: 683 RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSLV 740
           +GKG +L    D   I  +    + E +  +  AG+ + + + +DL  ++GKR   G L+
Sbjct: 667 KGKGNKLIQLDDKDQILSMTLLSLNEIIQVV--AGQQHLKIKGDDLQKYMGKRATKGQLL 724

Query: 741 PKGFPRSGKFL 751
           P+G+ ++ + L
Sbjct: 725 PRGYQKANRLL 735


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M+  EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMMPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/741 (37%), Positives = 435/741 (58%), Gaps = 22/741 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA+ L+DNP++ ++ +L  I GPDFPT   I+  ++ I + Y  GRG  ++R
Sbjct: 187 HNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRI
Sbjct: 247 ATWHKED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLTEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AI
Sbjct: 362 VTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A KA  +  M   EP+TV++S  GW+R  K H +D + L +K GD  
Sbjct: 480 ---RMSQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPAGLSYKAGDKY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   + L     I    +    
Sbjct: 536 LAHACGKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEK 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR--K 669
            +LL+ S  G  FI +  ++IA  + GK  + +    K+    K++     +V      +
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPEKLSESASLLVSLTSAGR 655

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYNRSE 723
           +LIF +  +P +S+GKG ++ S             V  F I E  +    S  R      
Sbjct: 656 MLIFPVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKP 715

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
            DL  +  +RG  GS +P+G 
Sbjct: 716 EDLQKFRAERGRKGSQLPRGL 736


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/745 (35%), Positives = 443/745 (59%), Gaps = 23/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL++ P+++++ +++YI GPD+PT   I+ S E I + Y+ GRG  
Sbjct: 184 IPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ +R
Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGLVEILNEWITYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR E++PKPV++SRF+++E Q 
Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPVLMSRFNISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EPITVV+S+ GW+RS K H ++ S L +K G
Sbjct: 479 D-----RRSPLQEREEA-KALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A    +    + L + G++Y++    L S R  GE +   + L     I    + 
Sbjct: 533 DSFKEAARGKSNQAAVFLDSTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
               K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  + 
Sbjct: 593 PEEQKYLMASDAGYGFICTFNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSY 719
           +  ++L+F +  +P++S+GKG   + +   +     D++ + +    +    +    R  
Sbjct: 653 KAGRMLLFPVSNLPQLSKGKGNKIINITGAQAASGEDLLVWLMVVPPQSAITLYFGKRKL 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
                DL  +  +RG  G+ +P+G 
Sbjct: 713 KFKSEDLQKYRAERGRKGTTLPRGL 737


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/690 (39%), Positives = 418/690 (60%), Gaps = 36/690 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL   A   KSAR+VG+V+GK 
Sbjct: 28  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+ E  EP + P++ P +L NG SGIAVG+AT IPSHN++E+  AA+A+
Sbjct: 148 INQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP++   +L++YI GPDFP GG I+ S   I  +Y  GRG  +VRARW +EE+ RG W
Sbjct: 208 IRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIEELARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 268 QLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAVRDESGKD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK +++ LL S      + A +   +KEI 
Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGS------ESAMKRLLIKEIE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLMHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662
              +   LL+ SS G  FI    ++++  + GK+F+ + +  +    M ++   T  H+A
Sbjct: 619 AASADQALLLASSNGFGFIARVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDAT--HIA 676

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691
            +  N +LL+F +D++  +S  G+GV L +
Sbjct: 677 CLSSNGRLLVFGLDEMKTLSGGGRGVTLMA 706


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/761 (36%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSEAKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/745 (35%), Positives = 443/745 (59%), Gaps = 23/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A +AL++ P++++++++++I GPDFPT   I+ S E I + Y+ GRG  
Sbjct: 184 IPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVWEKEE-----GNAVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ +R
Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIIYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIRNED+PK V++SRF++++ Q 
Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAVLMSRFNISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E   A KA  +  ++  EPITVV+S+ GW+RS K H ++ S L +K G
Sbjct: 479 D-----RRSPLQEREEA-KALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS K A    +    + L + G++Y++    L S R  GE +   + L     I    + 
Sbjct: 533 DSFKGAARGKSNQAAVFLDSTGRSYSIDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
               K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  + 
Sbjct: 593 PEEQKYLMASDAGYGFICTFNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLAIT 652

Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSY 719
           +  ++L+F +  +P++S+GKG   + +   +     D++ + +    +    +    R  
Sbjct: 653 KAGRMLLFPVSDLPQLSKGKGNKIINITGAQAASGEDLLVWLMVIPPQASITLYFGKRKL 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
                DL  +  +RG  G+ +P+G 
Sbjct: 713 KFKSEDLQKYRAERGRKGTSLPRGL 737


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/761 (36%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/716 (37%), Positives = 433/716 (60%), Gaps = 22/716 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V
Sbjct: 2   DRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAIV 61

Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
            +AQPF  RYPL+ GQGN+G +D   S AA RYTE+R++++AE++L  + +  VD++  +
Sbjct: 62  LMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQPNF 121

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +AA+ L+DNP+ ++++L 
Sbjct: 122 DGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDELS 181

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPT   I+  +E I + Y+LGRG  ++RA W  E+       IV+  +P+Q  
Sbjct: 182 TVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKED-----GEIVIRALPHQSS 236

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336
            S++I +IAE + AK++P++EDIRDE+  +  VRIVL P++  +D D +M  +F  +D+E
Sbjct: 237 PSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTDLE 296

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             + +NMN++ +   P V  L  IL EWL+ RR  + RR  +R+  +  R+ IL+GL+IA
Sbjct: 297 KSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLMIA 356

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +LNIDE+I IIR+ED+PK  +++RF+L++ Q +AILNLRLR L KLEE+++++E   L  
Sbjct: 357 FLNIDEVIHIIRHEDEPKAELMARFNLSDEQAEAILNLRLRHLAKLEEHELQAEQTELEK 416

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E+  ++ +L S ++    +  EI++  + ++       RR+   E + A KA  +  M+ 
Sbjct: 417 ERSSLEEILGSERRLNTLLKKEIQQDAKTYASP-----RRSPLVERAEA-KAIAENEMLP 470

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+TV++S  GW+R  K H +D   L +K GD      +  +    + + + G++Y L 
Sbjct: 471 TEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALD 530

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L S R  GE +   + L     I    + +    LL+ S  G  FI + +++IA  +
Sbjct: 531 PLMLPSARSQGEPLTGKLTLPAGATIDQLLIENEDQPLLMASDAGYGFICKFADLIARNK 590

Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQS 691
            GK  + +    K+   L +K +   +  +    ++LIF    +PE+S+GKG   V + S
Sbjct: 591 AGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPELSKGKGNKIVTIPS 650

Query: 692 YKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 S+++     I E  + +  +G R    +  DL  +  +RG  G+ +P+G 
Sbjct: 651 ANAKARSELLVRLLLIEENSSLVFHSGRRKIVLNPEDLQKFRAERGRKGTQLPRGL 706


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GD+ 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           +      +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 RAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/703 (37%), Positives = 400/703 (56%), Gaps = 46/703 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK----- 73
           A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +    +     
Sbjct: 18  ALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPTRSTAAK 77

Query: 74  --KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RY
Sbjct: 78  PVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRY 137

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++  L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT I
Sbjct: 138 TEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEI 197

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN++EI +A +ALI  P +S + LL  + GPD+P GG I+ S   I ++YR GRG  +
Sbjct: 198 PSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQIISSAGDIADAYRTGRGSLK 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAK 293
           VRARW +E++ RG W +VV E+P  V   R++E+I E+                  + A 
Sbjct: 258 VRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKVKAGKKALSQDQTQLKAS 317

Query: 294 RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES++D  VR+V  PK        L+ ++   + +ET  P+N+ ++ +   
Sbjct: 318 MLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTSLETSAPINLTMVGLDGK 377

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P    L  +L+EW+A R+  + RRS  R+  +  R+ IL+G     LNIDE+IAIIR  +
Sbjct: 378 PVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRAAE 437

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L   + K++ +LN     
Sbjct: 438 EPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELKELRESQGKLEDILN----- 492

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            N  +     VKEI + +      R T  +   A+K  + +  +  EP+TV++S +GW+R
Sbjct: 493 -NPGSLRRTMVKEIEADAKTFADARRTLIQ---AEKKAVAEVKVVDEPVTVIVSQKGWVR 548

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +   H  + ++  FK GD L       T D+++   ++G+ Y++P   L  GRG G+ + 
Sbjct: 549 ARTGHGHEAASFAFKAGDGLYATFECRTVDQLIGFGSNGRVYSVPVAQLPGGRGDGQPVT 608

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            LI+L     ++  F   ++  LL+ +S G  F+     +++  + GK FL +   E + 
Sbjct: 609 TLIELESGTQLLHYFAGPASATLLLSNSGGYGFLASVENLVSRQKGGKAFLTLGEGETVC 668

Query: 652 LVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSRG 684
                 G           HVA      ++L F I ++  M+ G
Sbjct: 669 PPSHAAGSTGAQPLPPATHVACASAGGRILTFEISELKTMANG 711


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/745 (36%), Positives = 427/745 (57%), Gaps = 41/745 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E+   K                   + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL+      N  + 
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI   +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H 
Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656
               IV      S  + L+ + +G  F    S++ +  R GK F+ +   +E ++ V   
Sbjct: 610 AGTRIVHTIAAASDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   +A++    K L+F +D++  +S  G+G  L        +D +   +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726

Query: 715 AGRSYNRSENDLLG------WLGKR 733
           AG   N+   D+L       ++GKR
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKR 751


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/755 (36%), Positives = 445/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +++E++ GPD+PT   I+     IV+ Y 
Sbjct: 181 VGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIVKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYAVE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D +M  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLLQILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR E+ PK  ++SR++
Sbjct: 356 EWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDPKAELMSRYN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I  E+++ 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKTEQSELEAERDKLQLLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S + KA  +  +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 AETYGDD-----RRSPLIERSES-KALTEHELAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKAGDSFLCSATGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEIM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     L+ S  G  F+    ++I+  + GK  L + +  K+   KLV +   +
Sbjct: 590 EHVLLGDEDKYYLLASDAGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK--------GVRLQSYKDGGISDVICFKICEGLTW 711
            +  +    ++L+FS++ +P++S+GK        G R ++ ++  I   +  +      W
Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPGERAKAREELLIHLYVVPEDTSVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/737 (37%), Positives = 426/737 (57%), Gaps = 23/737 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ L+  A  KKS R V
Sbjct: 15  MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 ITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314
           E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +RDES     VRIVLF
Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +L EWL+ R + + R
Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+Q ++ R+ +L+GLLI +LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ 
Sbjct: 370 RLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I        E+ + +   G 
Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD S + ++EGD L  A
Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMSYREGDRLLAA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +T ++  L ++G+AY+     L S RG+GE +                  D+    
Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLL 671
           ++ SS G  FI     +    + GK  + ++   +   +  +  V  D +  V     LL
Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLL 663

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727
             +  ++PE+ +GKG +L       ++    V    +    T +  +G R+ + S  DL 
Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMHLSFKDLE 723

Query: 728 GWLGKRGGVGSLVPKGF 744
            +L  RG  G L+P+ +
Sbjct: 724 AYLDTRGSRGQLLPRSW 740


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYTSP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 279/755 (36%), Positives = 428/755 (56%), Gaps = 45/755 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++ L    E  YL YA+S +K RA+P++ DG KPV RRI++AM EMGL  GA   KSAR+
Sbjct: 10  SLPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMKEMGLAAGAKPVKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 70  VGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN+ E
Sbjct: 130 IADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGASGIAVGMATEIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+AL+ +P +    L+ Y+ GPDFP GG I+ + + I  +Y  GRG  RVRA+W V
Sbjct: 190 VAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRAAYESGRGSVRVRAQWEV 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300
           E++ RG W ++V+E+P      +++ +I +    K                   +  L+ 
Sbjct: 250 EKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKALSQEQQNLKNLMLSQLDR 309

Query: 301 IRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES     VR+V  PK+  L+PD  M  +   + ME    +N+ ++ M   PQ   L 
Sbjct: 310 VRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSMNLVMVGMDGRPQQKGLK 369

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EWL  R   + RR + R+  +++R+ IL+G  + +L++D +I +IR  D+PKP ++
Sbjct: 370 AILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLDAVIRVIRESDEPKPELM 429

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F L+E Q + IL +RLR L +LE ++++ EL  L  E   +  LL S   +   I   
Sbjct: 430 AAFGLSEIQAEDILEIRLRQLARLEGFRLEKELGELRDEAGGLRHLLASDHARQKLI--- 486

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KEI + +   G RR +  E+  A+KATL Q  +  EP+T+++S +GW+R+   H V
Sbjct: 487 ---IKEIEADAAKYGDRRRS--ELKPAEKATLTQT-VADEPVTLILSKKGWLRARVGHHV 540

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           DL+ L FK+GD+L   L   T   +++L + G+AYT+ A ++ +GRG G  +  LID+  
Sbjct: 541 DLATLAFKDGDALAAVLETRTVWPVVVLDSHGRAYTVDAADVPTGRGDGVPVTSLIDVQE 600

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              +          + +V  S G  F+VE  ++++  + GK FL + + E     V VT 
Sbjct: 601 QAQVCHMLAAPEDARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLEAHEIPLAPVPVTA 660

Query: 659 DHVA-----VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF------KICE 707
             +A      + +  + L+F   ++  +++G+G+ L    DG   + +        +IC 
Sbjct: 661 AGLAAGQLVAISQQARALVFPASELKALAKGRGLMLMQLDDGDTLETLAVVEGSAARICG 720

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            L      GR  +    +   + GKR   G L+PK
Sbjct: 721 TL----RTGRE-DSFRLEFADYAGKRAKKGKLLPK 750


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/746 (36%), Positives = 443/746 (59%), Gaps = 22/746 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++ N + + L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 2   IMQGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAK 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+ D   S AA R
Sbjct: 62  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPDDPKSFAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T  A+ +L  + +  VD+ D ++    EPV+ P++ PN+L NGT GIAVGMAT 
Sbjct: 122 YTESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A + L+D+P  +++ L  +I GPD+PT   I+ S E I + Y  G G  
Sbjct: 182 IPPHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA++  E+       IV+T +P+QV  ++L+E+IA  ++AK++P++ED+RDES  +  
Sbjct: 242 KMRAKYEQED-----GNIVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENP 296

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+++ P+++ +D D +M  +F  +D+E  + +NMN++ +   P+V  L  IL EWLA R
Sbjct: 297 TRLLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFR 356

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + +R  +R+  +  R+ IL GLLIAYLNIDE+IAIIR+ED PKPV++ RF +T+ Q 
Sbjct: 357 TETVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPVLMERFGITDIQT 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++  L S +   N++   IR  KE+   
Sbjct: 417 EAILELKLRHLAKLEEMKIRGEQDELELERAALEKTLGSPR-LLNRL---IR--KELERD 470

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +   G  R +      A +A    A+I  EP+TV++S +GWIR+ K H +D+++L+++ G
Sbjct: 471 AEKYGDDRRSPIVARDAAQALETTALITNEPLTVILSEKGWIRAAKGHDIDVASLNYRSG 530

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A+   TT  + +L + G+AY+    +L S R  GE +   ++       +     
Sbjct: 531 DGFLDAVKCRTTQPVYILDSTGRAYSTATHDLPSARTQGEPLTGRLNPPPGSLFLHLLAG 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666
                 ++ S  G  F V+  E+++  + GK  + +    K+     ++   D +AVV  
Sbjct: 591 QPDDWYVLASHFGYGFRVQLKELLSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTL 650

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720
             +LLIF + ++P +++GKG +L       ++   D +   +     G   I +  R   
Sbjct: 651 QGRLLIFPVAELPALAKGKGNKLIQIPTADLTAGKDYVIAAVALPENGQLKIIAGKRQLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               D+  +   R   G  +P+GF R
Sbjct: 711 LKGADVEHYSAGRAKRGLALPRGFQR 736


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/684 (38%), Positives = 394/684 (57%), Gaps = 29/684 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S ++ R +PD+ DG KPV RR+++AM++MGL   A   KSAR+VG+V+GK 
Sbjct: 64  ERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVVGDVLGKY 123

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T  A+L+L  
Sbjct: 124 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPFADLLLAE 183

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF+  Y+    EP + P++ P LL NG SGIAVGMAT IPSHN++E+ +A   L
Sbjct: 184 IDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREVADACSLL 243

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I  P+ +   ++  + GPD+P G  I+     I + Y  GRG  RVRARW +E++ RG W
Sbjct: 244 IRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLEQLARGQW 303

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308
            I VTE+P+ V   +++E+I EL   K                   + +L+ +RD+S E 
Sbjct: 304 QIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDSVRDDSDEK 363

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VRIV  P +    P+ LM  +   + +E    +N+  + +   PQ   +   L EW+ 
Sbjct: 364 HPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIVPALTEWVE 423

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  ++RR+ IL G +IA+LNID++I +IR  D+PK  +++ F L+E 
Sbjct: 424 FRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDLIATFHLSEV 483

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE  +I+ EL  L  E+  + SLL       NQI  EI   K+ F
Sbjct: 484 QAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKF 543

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                 G  R T  E   A+K T    +    +P+T+++S  GW+R+   H +D+S L F
Sbjct: 544 ------GDDRRTLIE--SAEKVTSGAVVPTADDPVTIIVSRSGWLRARSGHGIDISTLTF 595

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD L  ++   T+  + +  T+G+ Y + +  + +GRG G  +  LI+L     +   
Sbjct: 596 KAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGRLTHV 655

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V D T   L+ SS G  ++   ++++   + GK F  +   E M    K+ GD V+ V 
Sbjct: 656 IVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAGDTVSAVC 715

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL 689
              +L++F + ++  M +GKGV+L
Sbjct: 716 SGGRLVLFPLSEVKVMPKGKGVKL 739


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 269/694 (38%), Positives = 409/694 (58%), Gaps = 36/694 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  G    KSAR+VG+V+GK 
Sbjct: 50  ERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSARVVGDVLGKY 109

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VRLAQ F  RYPL+ GQGNFG+ DGD+AAA RYTEAR+T +A+L+L  
Sbjct: 110 HPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLTPIADLLLSE 169

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+ +AA+AL
Sbjct: 170 LDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLKEVAKAAVAL 229

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
             NP +  +KLL YI GPDFP GG I+ S   I ++Y  GRG  ++RARW +E++ RG W
Sbjct: 230 AKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWSIEQLARGQW 289

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDES--A 306
            +VV+E P+ V   +++E+I EL   K                   + +L+ + DES  +
Sbjct: 290 QVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLDAVADESDKS 349

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +  R+V  PK+    PD +M  +   + ++    +N+ ++ +   PQ   L  +L+EW+ 
Sbjct: 350 QKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQKALTQVLREWVE 409

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  +R+  ++ R+ IL G +I YLNIDE+I +IRN D PK  ++ +F L+E 
Sbjct: 410 FRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPKEDLMKKFDLSER 469

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--VKE 484
           Q + IL +RLR L +LE  +I+ E+  L AE +++  +L S +         +RE  V E
Sbjct: 470 QAEDILEIRLRQLARLEGIKIEREIKELKAEAKELKRVLGSEE--------ALRELVVGE 521

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           I + +   G  R T  E ++  K T Q   +  EP+TV IS R W+R+   H +D SA+ 
Sbjct: 522 IEADAKQYGDERRTLIEEAQITKVTAQ---VSDEPVTVFISQRFWVRTRLGHGIDASAIA 578

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK+GDS+       TTD+ +++ ++G+  ++P   L +GRG G  +   I+L     I  
Sbjct: 579 FKDGDSIAATYECRTTDQCIVICSNGRVCSIPVSALPTGRGDGAPLATFIELAPGAKIAH 638

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662
           AF   +   +L+ +S G  F     +++   + GK F+ V  E  +  V+     H  VA
Sbjct: 639 AFCGKTETPVLISTSAGYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPTQHSLVA 698

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG 695
            + +N +LL+F + ++  +   GKG+ L   K+G
Sbjct: 699 ALSKNARLLVFVLSELKLLQGGGKGMMLIDLKEG 732


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 277/691 (40%), Positives = 414/691 (59%), Gaps = 32/691 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+VG+V+GK 
Sbjct: 27  ERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLGE 146

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+    EP V P++ P +L NG SGIAVG+AT IPSHN++E+  AA+AL
Sbjct: 147 IDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREVAGAAVAL 206

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I +P++S  +L++++ GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W
Sbjct: 207 IRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308
            +V+TE+P      +++E+I E I  K                   + L++ +RDES +D
Sbjct: 267 QLVITELPPNTAAQKVLEEIEEQINPKIKLGKKALTPEQLQTKQTLLGLVDAVRDESGKD 326

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+  PLNM ++     P+   L  IL EW+A
Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSEILHEWIA 386

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F LT+ 
Sbjct: 387 FRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLTDR 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK K++ LL S      Q+      +KEI 
Sbjct: 447 QAEDILEIRLRQLARLEKIKIEKELAELREEKAKLEELLGSESAMKRQL------IKEIE 500

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 501 ADAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 558 AGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSHLMHYY 617

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
              +   LL+ SS G  FI +  ++++  + GK+F+ + +       + +  D   VA +
Sbjct: 618 AASAEQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAEQVACL 677

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               +LL+F +D++  +S  G+GV L    D
Sbjct: 678 SSGGRLLVFGLDEMKTLSGGGRGVTLMGLDD 708


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/721 (38%), Positives = 416/721 (57%), Gaps = 32/721 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A+ L    E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L+  A   KSAR+
Sbjct: 53  ALPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARV 112

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T 
Sbjct: 113 VGDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTP 172

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 173 IAELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 232

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA   LI +PE  ++ +L  + GPDFP GG ++ S E+I ++Y  GRG  R+RARW +
Sbjct: 233 VAEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRI 292

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLED 300
           EE+ RG W ++V E+P+ V  ++++ +I  L   +                   + +L+ 
Sbjct: 293 EELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDT 352

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES++   VRIVL PK+     D  M  +   + +ET   +NM ++     PQ   L 
Sbjct: 353 VRDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLV 412

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL+EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+++I +IR  D+PKP ++
Sbjct: 413 QILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPALI 472

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F L++ Q + IL +RLR L +LE ++I+ EL+ L  E+E +  +L+      N+ A  
Sbjct: 473 AAFGLSDVQAEDILEIRLRQLARLEGFKIEKELNELKEEREGLQHVLD------NRSAMT 526

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSH 536
              +KEI   +   G  R T  E      A +  A I    EP+TV++S  GWIRS + H
Sbjct: 527 RLILKEIGEDTKKYGDDRRTLIETV----APIASAEISVADEPVTVILSKNGWIRSRQGH 582

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
            +D +A+ +K GD     L   TT  ++++ T G+AYT+   +L  GRG G  I  L++ 
Sbjct: 583 GLDAAAISYKAGDFAFALLETRTTWPLIVIDTHGRAYTVKVSDLPGGRGDGVPIATLVEF 642

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
                       D     L  +S G  F+   ++  +  R GK F+ +   EK+    KV
Sbjct: 643 QDGGKPAQVVSDDPATTWLFANSGGYGFLCSVADATSRQRAGKAFMALEKGEKVLAPAKV 702

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            G+ +A   EN ++L+F   ++   S G+GV + +  +G     +     + +  I+ AG
Sbjct: 703 FGEWIAAGSENGRILVFPRAEMKTQSGGRGVIVMALDEGEALSAVAVPADDAVLTIEGAG 762

Query: 717 R 717
           R
Sbjct: 763 R 763


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/747 (35%), Positives = 442/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +T+V +  + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 4   STVVYDAEEQIPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKST 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA
Sbjct: 64  AKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQDDPKSFAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+   ++++L  + +  VD++  ++    EP V P+K P +L NGT+GIAVGMA
Sbjct: 124 MRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+  A + L++NP  ++ +L E+++GPD PT   I+  RE I++ Y  G+G
Sbjct: 184 TDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDIIKMYETGKG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E  G  +   V+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +
Sbjct: 244 SLKMRAIWTKE--GNDA---VITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHE 298

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  LD IL +WL+
Sbjct: 299 NPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSLDKILGDWLS 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR   R+  ++RR+ +L   LIA+LN+DE+I I+R EDKP+ V++ RF LTE 
Sbjct: 359 FRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKPREVLMQRFDLTEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL+ RLR L +LEE +I+ E D L  E++ I+  L S +     I  ++ +V +  
Sbjct: 419 QANYILDTRLRQLARLEEMKIRGEQDELQKERDTIEKTLGSARMMKTLIKKDMLQVLK-- 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               + G  R +        +A  +  ++  EP+TVV+S +GWIRS K H +D ++L +K
Sbjct: 477 ----EHGDERRSPIVTREESQAFSEDQLLTSEPVTVVLSEKGWIRSAKGHEMDPASLSYK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  K A    +   ++L+ + G++Y L A  L S RG GE +   ++      I    
Sbjct: 533 AGDEFKFASRGKSNQSVILIDSTGRSYALAAHTLPSARGQGEPVTGRLNPPSGATIEGML 592

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAV 663
           +     ++L+ S  G  F+ +  ++++  + GK  L +    ++    ++  +    +A 
Sbjct: 593 MGSEDQRVLLASDAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNTWLAA 652

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID--SAGR 717
                +LL+F + ++PE++RGKG ++ +     + +    VI   + +    +   S  R
Sbjct: 653 FSNEGRLLVFKVTELPELARGKGNKIINIPSARVQNREEFVIALAVVQASDTLKVVSGKR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
             N    DL  ++G+RG  G+ +P+GF
Sbjct: 713 HLNLKFKDLEHYIGERGRRGNKLPRGF 739


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/762 (36%), Positives = 423/762 (55%), Gaps = 50/762 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG----AAFKK 74
           A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +     A   K
Sbjct: 17  ALGLGGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLSYSGNAPAKPVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 77  SARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A L+L  +D+  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSH
Sbjct: 137 RLTKIAGLLLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +AL+ NP +S E+L   + GPD+P GG I+ S   I ++YR GRG  +VRA
Sbjct: 197 NLREVADACVALVKNPRLSDEELFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIP 296
           RW +E++ RG W +VVTE+P  V   +++E+I ++                  + A  + 
Sbjct: 257 RWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLA 316

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           +L+ +RDES++D  VRIV  PK   +    L+ ++   + +ET  P+N+ ++ +   P  
Sbjct: 317 VLDGVRDESSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDGRPVQ 376

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  +L EW+  R++ + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D PK
Sbjct: 377 KSLRQMLAEWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPK 436

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++RFSL+E Q + IL +RLR L +LE  +I+ EL  L  E+ +++ +L       N 
Sbjct: 437 AALMARFSLSERQAEDILEIRLRQLARLEAIKIEQELSELRKEQGQLEDILA------NP 490

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            +     V+EI + +      R T  +     K  + +  +  EP TVV+S +GW+R+ +
Sbjct: 491 ASLRRLMVREIEADAKQFADARRTLIQEE---KKVVAEVKVVDEPTTVVVSQKGWVRTRQ 547

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H     +  FK GD L       T D++++  ++G+ Y++P   L  GRG G+ +  LI
Sbjct: 548 GHGHAADSFAFKAGDGLYGTFECRTVDQLIVFGSNGRLYSVPVAQLPGGRGDGQPVTTLI 607

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +L     I   F      +LL+  S G  F+ +   +++  + GK F+ +   E +    
Sbjct: 608 ELEPGTQIAHYFAGPVQAQLLLAGSGGYGFVAQVEHMVSRNKGGKAFVALGEGETLCAPS 667

Query: 655 KVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVIC 702
            V G           HV       ++L F I ++ +M + G+G+ L + +D   ++    
Sbjct: 668 HVAGTSASQPLAAATHVCCASAGGRILTFDIGELKQMDKGGRGLMLIALEDKDSLAGAAA 727

Query: 703 FKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGSL 739
           +     +  +   GR        RS N+  G  G++G    L
Sbjct: 728 YTRSVRIAGVGRGGRQREEQLEIRSLNNARGTRGRKGKAADL 769


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  D   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHDNPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREL 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/751 (37%), Positives = 428/751 (56%), Gaps = 40/751 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   
Sbjct: 11  EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 71  KSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP 
Sbjct: 131 ARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGIAVGMATEIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +VR
Sbjct: 191 HNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIYENGRGSLKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295
           ARW +EE+ RG W +VVTE+P      +++E+I E+                  + A  +
Sbjct: 251 ARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTPDQQQLKATVL 310

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +L+ +RDES +D  VR+V  PK++++D    ++++   + +E+  P+N+ ++     P+
Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINLVMIGTDGRPR 370

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I IIR  D+P
Sbjct: 371 QKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           KP +V  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S      
Sbjct: 431 KPALVEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRR 490

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +GW+R+ 
Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVIDEPVTVVMSQKGWVRTR 545

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G  I  L
Sbjct: 546 QGHGHDPQQFTFKAGDALYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGGRGDGVPITTL 605

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L     +   F  +++ ++L+ ++ GN F     ++    + GK+FL +   +   L 
Sbjct: 606 IELQSGSQVAHTFAGNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGD-APLA 664

Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               G+   H A +  N +LL+ +++++  +S  G+GV L   +     + +   +  G 
Sbjct: 665 PAPIGEEATHAACLSGNGRLLLVALEEVKVLSAGGRGVILMELEP---KEKLLQAVAVGA 721

Query: 710 TW--IDSAGRSYNRSENDLLG-----WLGKR 733
               +  AGR    S   L G     ++GKR
Sbjct: 722 PGLVLSGAGRGGKPSSQKLAGQSLLPYVGKR 752


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/754 (36%), Positives = 438/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E     +  +V++ +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTIE-----NGEVVISALPHQASSGKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D +M  +F  +D+E  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGLRELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  +++RF 
Sbjct: 356 EWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDPKAELMTRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IKSE   L AE++K+  LL+S ++    I       
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKSEQSELEAERDKLQLLLSSERRMKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+     D G  R +   V    KA  +Q ++  E +TVV+S +GW+R  K H VD  +
Sbjct: 470 KELIKDGEDYGDDRRSPLVVRGESKALTEQELVPAESVTVVLSEKGWVRCAKGHEVDGKS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDEFLCSAPGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLAPGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D +   ++ S  G  FI    ++I+  + GK  L + +  K+ L  KV      
Sbjct: 590 EHVLLADESQCYILASDAGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQ 649

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWID 713
             +A+  E R +L+FS+D +P++++GKG ++     +  K+     +    I E +    
Sbjct: 650 SILAITNEGR-MLLFSLDALPQLTKGKGNKIIGIPTERAKNREELLIHLNVIPEDMPVTL 708

Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/693 (39%), Positives = 416/693 (60%), Gaps = 36/693 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL   A   KSAR+VG+V+GK 
Sbjct: 28  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 88  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  A +A+
Sbjct: 148 INQGTVDFMPNYDGSSEEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAATVAM 207

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NP+I   +L+++I GPDFP G  I+ S   I  +Y  GRG  +VRARW +EE+ RG W
Sbjct: 208 IRNPKIEHAELMQHIAGPDFPGGAQIISSDAEISAAYESGRGSLKVRARWKIEELARGQW 267

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES  D
Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQTKQTMLALLDAVRDESGRD 327

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LNM ++     P+   L  IL EW+A
Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAYTSLESNASLNMVMVGGDGRPRQKGLSEILHEWIA 387

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++ F L++ 
Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE+ +I+ EL  L  EK K++ LL S      + A +   +KEI 
Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEIE 501

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +   G  R T  +  +  +AT  +A +  EP+TVV+S +GW+R+LK H +D++   FK
Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDVAGFTFK 558

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLLHYY 618

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVA 662
              +   LL+ SS G  F+ +  ++++  + GK+F+ + +     + M ++   T  H+A
Sbjct: 619 AASAEQALLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLKPMPMLPDAT--HIA 676

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
            +    +LL+F ID++  +S  G+GV L +  D
Sbjct: 677 CLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 709


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  + ++++++ GPD+PT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE + +R  +R+  I  R+ IL+GLL+AYLN+DE+I IIR ED+PK V++ RF +T+
Sbjct: 357 QFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEKLLGSERRMNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD S+L++
Sbjct: 477 YGDD-----RRSPIVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHDVDASSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +    + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KAGDKYLASARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + + +   LV S  G  F+ + S++++  R GK  + +    ++    ++  +  D + 
Sbjct: 591 VMGEESQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716
            +    ++L+F I  +P++ +GKG   + + S K     + +     + +G T    AG 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPSAKAKAREEFVSHLMALPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R       DL  + G+RG  G L+P+G  R
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQR 740


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/758 (37%), Positives = 440/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   L  E V+ + L    EE YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNLLDLSLEGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  +EL+L  V     D++  ++    EPV+ P++ P++L NG SGIA
Sbjct: 121 SFAAMRYTESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   LID+P+ ++  L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + VE     +  IV+T +P++V   +++++IA+ +  K++P++ D+RDE
Sbjct: 241 TGRGSFKSRAVYTVE-----NGEIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +N+N+L + + PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  FR+  I  R+ IL+GLL AYLNIDE+I IIR  D  K  ++SRF 
Sbjct: 356 EWLVYRMKTVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDDAKAELMSRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL ++LR L KLEE QI++E+D L  E+ K++ LL+S +++ N +       
Sbjct: 416 LSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKLERLLSS-ERRLNTLV-----K 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KEI + +   G  RR+   E   A KA  ++ ++  E +TVV+S +GW+RS K   VD  
Sbjct: 470 KEIQADALKYGDDRRSPLIERIEA-KALTEKELMPSETVTVVLSTQGWVRSAKGLDVDAQ 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           AL++K GD         +    + +   G+AY+L   +L S R  GE +    + N N  
Sbjct: 529 ALNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHSLPSARSQGEPLTGRFNQNENVP 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
            V A + D   + L+ S  G  FI + S+I +  + GKT + ++   ++    K+T    
Sbjct: 589 FVCALIGDDDDRYLISSDHGYGFIAKFSDINSRNKNGKTLINLTPNAQLMPPKKMTAADD 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWI-- 712
           D    +    +LL+F ++ +P +S+GKG R+ +      +     V   +I    + +  
Sbjct: 649 DWCLTISNEGRLLLFPVNSLPSLSKGKGNRMLNIISAKATKREEFVTMLEIIPQASSVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R      +DL+ + G+RG  GS +P+G  R  K 
Sbjct: 709 HAGKRKLTLKPSDLVHYQGERGRRGSKLPRGLQRVDKI 746


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/691 (38%), Positives = 410/691 (59%), Gaps = 35/691 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           ++V L     + YL YA S +K RA+PD+ DG KPV RRI++AM  MGL  G    KSAR
Sbjct: 16  ESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAMDRMGLRAGVKPVKSAR 75

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR++
Sbjct: 76  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLS 135

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +AEL+L  + E  V+F   Y+ ++ EP + P++ P LL NG SGIAVGMAT IPSHN+ 
Sbjct: 136 PIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGASGIAVGMATEIPSHNLG 195

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A +A+I NP IS ++L + + GPD+ +G  I+   E + + Y  G+G  +VRARW 
Sbjct: 196 EVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQIYETGKGTVKVRARWE 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP------------------LLE 299
            EE+ RG W +VVTE+P      +++E+I EL   K  P                  LL+
Sbjct: 256 FEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSLNSEQQNTKSMMLGLLD 315

Query: 300 DIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES   + VR+V  PK   +D +  + ++   + ME    +N+  + +   P+   L
Sbjct: 316 AVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSINLVCIGIDGKPRQRNL 375

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW+  R E +  R+ +R++ +  R+ +L+G  I  LN+DE+I+ IRN D+PKP +
Sbjct: 376 KEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVDEVISTIRNSDEPKPAL 435

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F+L++ Q + IL ++LR L KLE  +I+ EL++   E++K+++LLNS      QI  
Sbjct: 436 IEKFNLSDRQAEDILEMKLRQLAKLEGIKIQQELEDKRLEQKKLENLLNSNSSLKKQI-- 493

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
               +KEI S +      R T   +  A+KATL+  +++ EP+TV+IS++GW+R+ + H 
Sbjct: 494 ----IKEIESDAKKYADARRTL--IKHAEKATLEVKVVD-EPVTVIISDKGWVRARQGHG 546

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           V+ SAL+FK GDSL       T D ++ + ++G+ YT+P  +L S RG G+    +IDL 
Sbjct: 547 VEESALNFKSGDSLYGTFEVRTVDNLIGIGSNGRVYTVPVSSLPSARGDGQPYSAMIDLE 606

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---- 653
               I            L++   G  F+    ++++  + GK+F  +S EE   L+    
Sbjct: 607 SKTQISHYVCAKEDSVWLLMQDNGLGFVTTFKDMVSRIKAGKSF--ISMEEGANLLRPIP 664

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  +  ++ ++ +N + LI  I  I  ++ G
Sbjct: 665 VGSSARYIGMLSKNDRFLIVPIQDIKHLNSG 695


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/745 (36%), Positives = 426/745 (57%), Gaps = 41/745 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E+   K                   + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL+      N  + 
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI   +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H 
Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656
               IV         + L+ + +G  F    S++ +  R GK F+ +   +E ++ V   
Sbjct: 610 AGTRIVHTIAAAPGSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLF 669

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   +A++    K L+F +D++  +S  G+G  L        +D +   +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726

Query: 715 AGRSYNRSENDLLG------WLGKR 733
           AG   N+   D+L       ++GKR
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKR 751


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|332381809|gb|AEE66656.1| DNA topoisomerase IV subunit A [Bordetella pertussis CS]
          Length = 771

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/749 (36%), Positives = 427/749 (57%), Gaps = 41/749 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E+   K                   + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL+      N  + 
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +   +KEI   +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H 
Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656
               IV         + L+ + +G  F    S++ +  R GK F+ +   +E ++ V   
Sbjct: 610 AGTRIVHTIAAAPDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G   +A++    K L+F +D++  +S  G+G  L        +D +   +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726

Query: 715 AGRSYNRSENDLLG------WLGKRGGVG 737
           AG   N+   D+L       ++GKR   G
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKRARKG 755


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 270/754 (35%), Positives = 440/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+ D ++    EP   P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+D P+  + +LLE + GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E+       I++T +P+Q    +++E+IA  +IAK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTLEQ-----GEIIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D++  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGLKEMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R++ +  R+ IL  LLIA+LNIDE+I IIR ++ PK  + +RF+
Sbjct: 356 EWLVYRVGTVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPKSELKARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++I +E + L AE++K+  +L S ++    +  E+   
Sbjct: 416 LTDKQAEAILDLKLRHLAKLEEFKITAEQEELAAERDKLQLILGSERRLKTLVKKELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E S + KA  QQ +   E +TVV+S +GW+R  K H VD  A
Sbjct: 476 GETYGDA-----RRSPIVERSES-KALTQQELTPTEAVTVVLSEKGWVRCAKGHDVDGQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + T G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFATDSHTLPSARSQGEPITTRFNMAPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D   + L+ S  G  FI   S++ +  + GK  L +    +  +  ++      
Sbjct: 590 QHVLMGDDDQRYLMASDAGYGFICSFSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSP 649

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV---ICFKICEGLTWI 712
             +A+  E R +L+F +D +P++S+GKG   + + S +     ++   +C    +    +
Sbjct: 650 SILAITNEGR-MLMFELDALPQLSKGKGNKIIGIPSERSKAREELLAHLCLVPADCSVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 449/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 278/743 (37%), Positives = 440/743 (59%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKVELMARFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E   A K   +  M   EP+TV++S  GW+R  K H +D  +L +K GDS 
Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   +  + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 536 LAHACGKSNQAVAFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++      + KD    ++ ++       L +  S  R    
Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITILAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/754 (35%), Positives = 447/754 (59%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   + KA  +Q +   EP+TVV+S++GW+RS K H +D  +
Sbjct: 476 GETYGDD-----RRSPIVERHES-KALTEQELTPSEPVTVVLSDKGWVRSAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREM 649

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID- 713
             +A+  E R +L+FS++ +P++S+GKG   + + S +     +++   ++    T +  
Sbjct: 650 SILAITNEGR-MLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTL 708

Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E     +  IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712
           ++A +    +LL+F I ++PE+ +GKG ++       ++  +  C  +        LT +
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPSRVANREEYCVALAVLHEKSSLT-L 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            S  R +    +DL  + G+RG  G+ +P+GF
Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREL 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/687 (38%), Positives = 422/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSAIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++++GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/716 (37%), Positives = 409/716 (57%), Gaps = 36/716 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + N+N   EEN  AV +    EE YLAYA+S +K RA+P + DG KPV RRI++A
Sbjct: 1   MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYA 55

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+
Sbjct: 56  MKEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG 
Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT I  HN++EI  A L ++DNP  +    ++++ GPDFP GG ++     I+
Sbjct: 176 SGIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADIL 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV------------------QKSRL 282
            +Y  GRG  R+RARW VE + RG W I++ E+P+ V                  +  + 
Sbjct: 236 STYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKT 295

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I++   LI    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+N
Sbjct: 296 IDQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M ++     P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE
Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I +IRN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + 
Sbjct: 416 VIKVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L S  +     A EI++  E +        RRT    V R      Q+A +  EP+T+
Sbjct: 476 TILGSDTKLRRLTAKEIKQDAEKYGDD-----RRTLIEPVERVQGG--QKAFVVDEPVTI 528

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++S  GWIR+ + H V+  A+ +K GDS    +   TT  I+LL ++G+ Y   A  +  
Sbjct: 529 LLSKNGWIRARQGHGVERDAISWKAGDSEFAVIETRTTLPIVLLDSNGRCYAFDASTVPG 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G+G G  +  +I++ +   +V A       + L  +S    FI     ++A  + GK F+
Sbjct: 589 GKGDGIPLSSIIEVQNGAKLVHALSGKDDDRYLFATSNSYGFIAPLKGLVARPKAGKAFM 648

Query: 643 KVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K   E K  ++  +  D   H+ V     KLL+F++ ++ E    GKGVR+    D
Sbjct: 649 K--PEGKATILPPLALDDRTHLVVTSSENKLLVFAVTEMNEYPNGGKGVRIMDIPD 702


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/718 (38%), Positives = 414/718 (57%), Gaps = 38/718 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +E++ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPDQLQLKQTMLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+  P+N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+A+R E + RR+  R+  ++ R+ IL+G  +  L I+E+I IIR  D+PK
Sbjct: 372 KGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+  +D LL S      +
Sbjct: 432 PALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQADLDVLLKS------E 485

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                R +KEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 486 TVMRRRIIKEIETDAKQYGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDVLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703
                 V  D   VA +  N +LL+F + ++  + S G+GV L    K+  ++  + F
Sbjct: 663 PNKPAAVPEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLAQALAF 720


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/743 (36%), Positives = 447/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE++++ E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQEEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/684 (38%), Positives = 400/684 (58%), Gaps = 32/684 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+VG+V
Sbjct: 25  RYA-EQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLGPGAKPVKSARVVGDV 83

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T  + L
Sbjct: 84  LGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSRL 143

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+ +A
Sbjct: 144 LLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQA 203

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI  P +S E+L   + GPDF  GG I+     I + Y  GRG  + RARW  EE+ 
Sbjct: 204 CVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADIAQIYAGGRGSLKARARWRFEEMA 263

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VV E+P      +++E+I E+   K                   + LL+ +RDE
Sbjct: 264 RGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKKSLTTDQQQAKAVMLNLLDAVRDE 323

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L  IL 
Sbjct: 324 SGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSVPVNLVCIGTDGRPRQKGLRDILT 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  D+PK  ++ RF 
Sbjct: 384 EWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPKAALMQRFQ 443

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE  +I+ EL +   E+ ++  LL+      N  + +   V
Sbjct: 444 LSERQAEDILEMRLRQLARLEGIKIEQELADKREEQSRLQELLD------NPASLKRLLV 497

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  E   A++A L+  +++ EP+TV++S +GW+R+ + H  D + 
Sbjct: 498 KEIEADAKQYGDERRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHGHDAAQ 554

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL     I
Sbjct: 555 FGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVAGLPSARGDGQPVTTMIDLAPGTRI 614

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660
           V +       + L+ + +G  F     ++++  R GK F+ + + + +   V +      
Sbjct: 615 VHSIAASPDSRWLLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDGARQ 674

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG 684
           +A++    K L+F +D++  +S G
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSAG 698


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTG 658
                + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLRPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/754 (35%), Positives = 440/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EPV  P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV E+  A + LIDNP+  + +L+E++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIERIYD 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R RA +  EE G     IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIRARAVYS-EEQGE----IVITSLPHQASSGKILEQIANQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  +  R+ IL+ L++A+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++IK E D L AE++K++ LL+S ++    +  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKIKGEQDELAAERDKLELLLSSERRLKTLVKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +  +     RR+   E  R D KA  +Q +   E +TVV+S++GW+R  K H VD+ 
Sbjct: 476 GETYGDN-----RRSPIIE--RVDAKALTEQELTPTESVTVVLSDKGWVRCAKGHDVDVE 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GDS   ++   +    + + + G+A+   +  L S R  GE I    ++     
Sbjct: 529 GLSYKSGDSYLCSVMGKSNQAAVFIDSTGRAFATDSHTLPSARSQGEPITTRFNMAPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG 658
           +    + +     L+ +  G  FI    ++++  + GK  L + +     + KL+ K   
Sbjct: 589 MQHVLMGEDEQFFLLATDAGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTAD 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID- 713
             +  +    ++L+FS+D +P++S+GKG ++         +    ++   +    T +  
Sbjct: 649 QSLLAITSEGRMLMFSLDALPQLSKGKGNKIIGIPTDRAKNREELLLHLNVVPHNTAVTL 708

Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/751 (36%), Positives = 443/751 (58%), Gaps = 28/751 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+ T+ E + + +   F  E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL 
Sbjct: 2   NAKTMNEVSERKLLAEFT-EKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLK 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126
             A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+ D   S 
Sbjct: 61  ATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSF 120

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+++ AE++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVG
Sbjct: 121 AAMRYTEARLSRYAEVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVG 180

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MA+ I  HN+ E+  A + L+DNP   +  + +YI GPDFPT   I+   E+I   Y  G
Sbjct: 181 MASDILPHNLTEVANACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
            G  ++RA +  E+       IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES 
Sbjct: 241 NGSIKMRAVYNQEKQN-----IVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESD 295

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  I+ EW
Sbjct: 296 HEHPTRLVIVPRSNRVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEW 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L +R  V+ RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR  ++PK  +++RF+++
Sbjct: 356 LVYRISVVRRRLEYRLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQPKQGLIARFNIS 415

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL ++LR L KLEE +++ ELD L  E++ + ++L S +Q+  ++  E     E
Sbjct: 416 DRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILAS-EQRLKKLVKE-----E 469

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           I +   + G  R +   V +  +A  ++ ++  EPITVV+S +GW+R+ K H ++   L 
Sbjct: 470 ITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWVRAAKGHDINGCELS 529

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK GD  K    A +  +IL   ++GK Y+LP   L S RG GE +   ++         
Sbjct: 530 FKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGALFEA 589

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---- 660
           A   ++   +L+ S  G  FI +  ++    R GK  +K+  E    L  ++   H    
Sbjct: 590 AVGGEADQSVLLASDAGYGFIAKIGDLYVKNRNGKACIKL-PETSHILPPRILPKHDELF 648

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           +A      +LLI S  +IPE+SRGKG +L S        ++  + D+      + LT + 
Sbjct: 649 IACATNAGRLLICSTKEIPELSRGKGNKLISIPTAKVVSREEYVIDIQVLTADDTLT-VH 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +  R +     DL  + G+RG  G+ +P+G 
Sbjct: 708 AGKRHFTLKGADLEHYKGERGRRGNRLPRGL 738


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 277/737 (37%), Positives = 432/737 (58%), Gaps = 24/737 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 121 ISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ L+DNP+  ++ +L  I GPDFPT   I+  ++ I + Y  GRG  ++RA W  
Sbjct: 181 VADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHK 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRIVL P+
Sbjct: 241 ED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L EWL  RR  + RR 
Sbjct: 296 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AILNLRL
Sbjct: 356 QHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E  + ++       R 
Sbjct: 416 RHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP-----RM 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E   A KA  +  M   EP+TV++S  GW+R  K H +D   L +K GD       
Sbjct: 471 SQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPEGLSYKAGDKYLAHAC 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + + G++Y L   +L S R  GE +   + L     I    +     +LL+
Sbjct: 530 GKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEKQELLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673
            S  G  FI +  ++IA  + GK  + +    K+   + + + T   V++    R +LIF
Sbjct: 590 ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPETLSESTSLLVSLTSAGR-MLIF 648

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYNRSENDLL 727
            +  +P +S+GKG ++ S             V  F I E  +    S  R       DL 
Sbjct: 649 PVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKPEDLQ 708

Query: 728 GWLGKRGGVGSLVPKGF 744
            +  +RG  GS +P+G 
Sbjct: 709 KFRAERGRKGSQLPRGL 725


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/743 (35%), Positives = 448/743 (60%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E + A KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+   +L+       +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++     Q+ K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/758 (35%), Positives = 441/758 (58%), Gaps = 27/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N +  E V+   LR   E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTDHNAMSLEGVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  V++   ++    EP + PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L++NP+  +E+L+ ++ GPD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA   V +V  G   IV+T +P+QV  S+LIE+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVKMRA---VYQVIDGE--IVITALPHQVSGSKLIEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D +M  +F  +D+E  + +N+N+L +   P V  L  IL 
Sbjct: 296 SDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK  ++SRF 
Sbjct: 356 EWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAALMSRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL ++LR L KLEE +I++E + L AE++K+ ++L S ++    +  E+   
Sbjct: 416 LSEKQAEAILEIKLRQLAKLEEIKIRAEQEELAAERDKLQTILGSERRLKTLVKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A +A  +Q +   EP+TVV+S + W R  K H V+  +
Sbjct: 476 AETYGDD-----RRSPLVERGEA-RALTEQELTPAEPVTVVMSQKAWGRCAKGHDVEPES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD         +   ++ L + G+AYT    +L S R  GE +    +L     +
Sbjct: 530 LSYRAGDGYLAHARGRSNQPVVFLESSGRAYTTEPHSLPSARSQGEPLSGRFNLVAGARL 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               +       L+ +  G  F+ +  E+++  + GK  L V +  ++   + +     D
Sbjct: 590 EHVVMGQDDDHYLMATDAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQAND 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTW 711
            +  +    ++L+F + Q+P +++GKG         R +S ++     V+  +  +   W
Sbjct: 650 RLLAISTEGRMLLFPLSQLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGAQITLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             +  R      +DL  +LG+RG  G+ +P+G  R  K
Sbjct: 710 --AGKRKLTLKSSDLEHYLGERGRRGNKLPRGLQRVDK 745


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D  
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/699 (38%), Positives = 412/699 (58%), Gaps = 28/699 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   
Sbjct: 11  EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTE
Sbjct: 71  KSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T ++ L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT +P 
Sbjct: 131 ARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGIAVGMATEVPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +VR
Sbjct: 191 HNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIYESGRGSLKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295
           ARW +EE+ RG W +VVTE+P      +++E+I EL                  + A  +
Sbjct: 251 ARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTPEQQQLKASVL 310

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +L+ +RDES +D  VR+V  PK+++++    ++++   + +E+  P+N+ ++     P+
Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNLVMIGTDGRPR 370

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL+EW+  R   + RR+ +R+  ++ R+ IL+G ++  LNIDE+I IIR  D+P
Sbjct: 371 QKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           KP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+  +D LL S      
Sbjct: 431 KPALMERFGLSDRQAEDILEIRLRQLARLEAIRIEKELKDLREEQADLDVLLKSDTMMRR 490

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I  EI    + +S   D   RRT   E  RA      +  +  EP+TVV+S +GW+R+ 
Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVVDEPVTVVVSQKGWVRTR 545

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D     FK GD+L       T D +L   T+G+ Y++P  +L  GRG G  +  L
Sbjct: 546 QGHGHDAQQFTFKAGDALYDTFECRTIDVLLAFGTNGRVYSVPVASLPGGRGDGVPLTTL 605

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L     I   F   +  ++L+ +  GN F+ + +++    + GK+FL +   +     
Sbjct: 606 IELQPGSQIAHTFAGSAEQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPLTP 665

Query: 654 VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
             +  +  HVA +  N +LL+ ++D++  +S  G+GV L
Sbjct: 666 APIASEATHVACLSGNGRLLLVALDEVKVLSAGGRGVIL 704


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/703 (38%), Positives = 408/703 (58%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+I IIR  D+PK
Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKS------E 485

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                R +KEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 486 TMMRRRIIKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
               V V  D   VA +  N +LL+F + ++  + S G+GV L
Sbjct: 663 PNKPVAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/744 (36%), Positives = 440/744 (59%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KK
Sbjct: 10  DGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSQSKHKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ AE++L  + +  VD+   ++    EP+V PS+ P++L NG +GIAVGMAT +P 
Sbjct: 130 ARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+ SR  I + Y  G+G  + R
Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYATGKGSIKAR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + +E     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDES  +  VRI
Sbjct: 250 AVYAIE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM  +F  +D++  F +N+N+L +   PQV  L  IL EWL  R   
Sbjct: 305 VVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILTEWLEFRLTT 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR + R+  +  R+ IL+ L++A+LNIDE+I IIR E+ PK  ++SRF +++ Q DAI
Sbjct: 365 VTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENPKAELMSRFKVSDIQADAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+L+LR L KLEE +I SE   L  E++K+  LL+S ++    I  E+ +  E +     
Sbjct: 425 LDLKLRHLAKLEEMKITSEQGELATERDKLQLLLSSDRRLKTLIKKELIQDGETYGDD-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E S + KA  +  +   E +TVV+S +GW+R  K H +D + L +K GD  
Sbjct: 483 ---RRSPLVERSES-KALTEHELSPVEAVTVVLSEKGWVRCAKGHDIDGNGLSYKSGDGF 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             +    +    + + + G+A+      L S R  GE I    +L+  + +    + D  
Sbjct: 539 LCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVMEHVLLGDED 598

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
              L+ S  G  F+    ++++  + GK  L + +  K+   KLV K   + +  +    
Sbjct: 599 KFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPKLVDKSKVESILAITNEG 658

Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722
           ++L+FS++ +P++S+GKG   + + + +     +++   + + EG +    AG R     
Sbjct: 659 RMLLFSMEALPQLSKGKGNKIIGIPTERAKNREELLTHLYVVPEGTSVTLWAGKRKLTLK 718

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +DL  + G+RG  G+ +P+G  R
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQR 742


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/755 (35%), Positives = 440/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I       
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+   +   G  R +        +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 470 KELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711
            +  +    ++L+FS+  +P++S+GKG ++          +D  ++ +        +T W
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ +A  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTG 658
                + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D  
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/718 (37%), Positives = 413/718 (57%), Gaps = 38/718 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +E++ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTPEQLQLKQTLLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  LNIDE+I IIR  D+PK
Sbjct: 372 KGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+ ++D LL S      +
Sbjct: 432 PALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQAELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      VKEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 492 I------VKEIETDAKQFGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703
                 V  D    A +  N +LL+F + ++  + S G+GV L    K+  ++  + F
Sbjct: 663 PNKPAAVPEDAYGAACLSANGRLLLFPLAEVKTLASGGRGVILMELEKNETLAQALAF 720


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/739 (36%), Positives = 433/739 (58%), Gaps = 24/739 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +LR   E+ YL Y++S I +RA+P + DG KPV RRII+AMSE+GL   A  KKSAR VG
Sbjct: 15  ALRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVG 74

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYTE+R+T+ 
Sbjct: 75  DVLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQDDPKSFAAMRYTESRLTRY 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + +  VD+   ++    EP   P++ PN+L NG SGIAVGMAT IPSHN+ E+
Sbjct: 135 AHALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEV 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L+D P  ++  L   I GPDFP+   I+  R  +   Y+ G G  R RA +  E
Sbjct: 195 VNACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKN 317
           +       I++T +PYQV  +++IE+IAE I  K++PL++D+RDES  +   RIV+ P++
Sbjct: 255 KNQ-----IIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRS 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +D D LM+ +F  +D+E  + +N+N++ +   PQV  L  IL+EWL +R+  + +R  
Sbjct: 310 SRVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLE 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           F +  I +R+ +L+G LI Y ++DE+I +IR  D PK  ++  + L++ Q DAIL +RLR
Sbjct: 370 FHLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKTQLMRHYKLSDIQADAILEIRLR 429

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLEE ++++E  +L+AE++ +  +L+S  Q    I  E++E  + +    DL  RR+
Sbjct: 430 QLAKLEEIKLRAEQKSLIAERDNLQKILSSKTQLKRLIRSELQEDAKRYG---DL--RRS 484

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
            F E  RA +A  +  +I  EP+TV++S RGWIR+ K H  D+S L FK GD+LK  +  
Sbjct: 485 PFVE-RRAAQALQKTEIISSEPMTVILSTRGWIRAAKGHDFDVSGLSFKAGDALKSTVLG 543

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +   ++L+ + G++Y+ P  +L S R  GE +    +        +    +    ++V 
Sbjct: 544 RSNQLLVLMDSTGRSYSTPLHSLPSARSSGEPLTSRFNPPPGVQFESMISGNPDQAIVVS 603

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFS 674
           S  G  FI + SE+ +  R GK+ LK+S+   +  ++ +      +VA+      LLI S
Sbjct: 604 SDAGYGFITQLSEMYSKNRNGKSLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIIS 663

Query: 675 IDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
             ++P++SRGKG ++       +  ++  I+ +           + S  +       D +
Sbjct: 664 AYELPQLSRGKGNKMMQISSKKREQREEFIAKITSLPSKNSSLLLTSGKKQVVWKARDWI 723

Query: 728 GWLGKRGGVGSLVPKGFPR 746
            + GKRG  G  +P+G  +
Sbjct: 724 HYRGKRGQRGRKLPRGLQK 742


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/687 (38%), Positives = 426/687 (62%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITFDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LID+P+  + +++E + GPD+PT   I+  +  I + Y+ GR
Sbjct: 182 ATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +TE
Sbjct: 357 EFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNISAGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  + GK  + +    ++     +  +  + + 
Sbjct: 591 VMGEDEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++S+GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/755 (35%), Positives = 441/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I       
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+   +   G  R +        +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 470 KELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711
            +  +    ++L+FS++ +P++S+GKG ++          +D  ++ +        +T W
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/755 (35%), Positives = 444/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   +   + +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGDN-----RRSPIVQRHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711
            +  +    ++L+FS+  +P++S+GKG ++          +D  ++ +        +T W
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSETSVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/753 (35%), Positives = 446/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   + +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L +    K    +L+ +    
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713
            +  +    ++L+FS++ +P++S+GKG   + + S +     +++   ++    T +   
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 280/746 (37%), Positives = 436/746 (58%), Gaps = 43/746 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI++AM EMGL   + F KSAR+VGEV+GK 
Sbjct: 51  ERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARVVGEVLGKF 110

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S YD++VRLAQ F  RYPL+ GQGNFG+ DGD++AA RYTEAR+T +A ++L  
Sbjct: 111 HPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTPIAAVLLSE 170

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D   VD    Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++EI  AA   
Sbjct: 171 LDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLREIGGAAALC 230

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           + NP+ S E++L  I GPD P+G  I+ S   I E YR GRG  ++RARW VEE+ RG W
Sbjct: 231 VRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSVEELARGQW 290

Query: 267 CIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLEDIRDESAED 308
            + V E+P+ V   +++E+I EL      + K+             + +L+ + DES +D
Sbjct: 291 RVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDKVADESDKD 350

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+     + LM  +   + +E    +NM ++ +   P+   +  I++EW  
Sbjct: 351 QAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAITDIIREWAQ 410

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR ++R+  I+ R+ +L+G +  +LN+DE+I IIR  D PK  +++RF L++ 
Sbjct: 411 FRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVALIARFELSDR 470

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L ++E  +I+ EL  L  E   ++ +L S      ++A EI E  +I 
Sbjct: 471 QAEDILEIRLRQLARMEGIKIERELKGLQEEGADLNKMLASESLLRRRVAREIDE--DIK 528

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +   D   RRT    + +A++ +L   +++ EP+TV+IS + W R+   H +DLSA+ FK
Sbjct: 529 AYGDD---RRTL---IEQAERVSLTATVVD-EPVTVLISQKYWGRTRIGHGLDLSAVAFK 581

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDSL  A    +TD+ +++S++G+  ++P   L  GRG G  +  L++L     IV  F
Sbjct: 582 EGDSLLAAFECRSTDQCIVISSNGRVCSIPVSVLPGGRGDGVPLTTLVELAAGAKIVRVF 641

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
              +   +L+ +S    F+ + S++I   + GK F+ +  +E  +  V+    +   V+ 
Sbjct: 642 CGAAEQNVLLATSASYGFVCQLSDMIGRNKAGKQFITIEGDELILPPVLYTPSEQAQVIS 701

Query: 666 ENR--KLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWID--SAGR 717
            +R  +LL F+   +PEM R    G+G+ +   ++G +   +       +T I   ++GR
Sbjct: 702 VSRSGRLLSFA---LPEMKRLSSGGRGLIVMGLEEGDVLASLMVAEKSKITVISQTASGR 758

Query: 718 --SYNRSENDLLGWLGKRGGVGSLVP 741
             +   SE +LL   GKR  +G ++P
Sbjct: 759 EQAIRLSEAELLTHFGKRARMGRMLP 784


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/651 (40%), Positives = 388/651 (59%), Gaps = 29/651 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+   ++L    E  YL YA+STI+ RA+PD+ DG KPV RRI+ AM EMGL   A   
Sbjct: 10  EESTDGLTLARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAMHEMGLGPAAKPV 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG+ DGD AAA RYTE
Sbjct: 70  KSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSRDGDGAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+TQ A L+L  +D+  V+F   Y+   +EP + P++ P +L NG SGIAV MAT IPS
Sbjct: 130 ARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGASGIAVAMATEIPS 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA+ALI +P++S E L++ + GPDFP GG I+ S   + E+YR GRG  RVR
Sbjct: 190 HNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAEAYRSGRGSIRVR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------IIAKR--I 295
           AR+ +EE+ RG W +VV E+P+ V   +++E++ EL                + AK   +
Sbjct: 250 ARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKALTPEQLQAKSQIL 309

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +++ +RDES  +  VR+V  PK   ++  LL+ ++   + +ET   +N+ +L   + P+
Sbjct: 310 NVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSINLVMLGQDKRPR 369

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL+EW+  R   + RRS+ R+  ++ R+ IL+G  +  LNIDE+I IIR  D+P
Sbjct: 370 QKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEP 429

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           KP ++  F LTE Q + IL +RLR L +LE  +I+ EL  L  E++K+  LL S      
Sbjct: 430 KPALMQAFGLTERQAEDILEIRLRQLARLEAIRIEQELKELFDERKKLQGLLGS------ 483

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +   +   +KEI +     G  R T  E +       +Q    +EP+TV+IS +GW+RS 
Sbjct: 484 EATLKKAVIKEIEADIKTYGDDRRTLIEAAEKAAVEARQV---EEPVTVIISAKGWVRSR 540

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D    +FK GD L  A    TTD++  L+++G+ Y++P   L S RG G  +   
Sbjct: 541 QGHGHDARQFNFKTGDELAGAYEVKTTDQLHALASNGRVYSIPVAGLPSARGDGVPVTSF 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++L     I+ AF   +   +L+ + KG        +  +  + GK FL +
Sbjct: 601 VELEAGSQILHAFAAPADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTL 651


>gi|332284680|ref|YP_004416591.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
 gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/750 (36%), Positives = 423/750 (56%), Gaps = 41/750 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+P++ DG KPV RRI++AM  MGL  GA   KSAR+V
Sbjct: 18  ITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPVKSARVV 77

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ FV RYPL+ GQGNFG+ DGD+AAA RYTEAR+T  
Sbjct: 78  GDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTEARLTPF 137

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A ++L  +DE  VDF   Y+    EPV+ P++ P +L NG SGIAVGMAT IPSHN++E+
Sbjct: 138 ARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPSHNLREV 197

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI NP++  E L   + GPDF  GG I+ S   I   Y  GRG  + RARW  E
Sbjct: 198 AQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKARARWQFE 257

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKI------------------AELIIAKRIPLLEDI 301
           E+ RG W +VV E+P      +++E+I                   + I A  + LL+ +
Sbjct: 258 ELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALMLGLLDAV 317

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK   +D D  +  +   + ME    +N+  +     P    L  
Sbjct: 318 RDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPGQRALRQ 377

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L EWL  R + + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 378 VLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALMQ 437

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE ++I+ EL     E+  +  LL+      N  A + 
Sbjct: 438 RFDLSERQAEDILEMRLRQLARLEGFKIEKELAAQRDEQAALRELLD------NPSAFKR 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +KEI + +   G  R T  EV  A++A L+  ++E EP+TV+IS RGW+RS + H  D
Sbjct: 492 LMIKEIEADAKQYGDDRRTLIEV--AERAVLENRVVE-EPVTVIISQRGWLRSRQGHGHD 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S  +FK GD L  A+   +TD ++  S  G+ YT+   +L S RG G+ +  ++++   
Sbjct: 549 ASQFNFKAGDGLYDAIECLSTDELVAFSNTGRVYTVAVSSLPSARGDGQPVTSMMEVESG 608

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVT 657
             I       +  + ++ +  G  FI    ++    R GK F+ +   + +   L ++ T
Sbjct: 609 SRITHMIAGAAQQRYVLGTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKPLRLRDT 668

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+A++ +  + L+ ++ ++  +S  G+G  L     G   D++   +  G   I + G
Sbjct: 669 DQHLAMLAKKGRFLVVALSELKRLSGGGRGTILMGLDAG---DILAQWVPVGPDGILAKG 725

Query: 717 RSYNRS-----ENDLLG-WLGKRGGVGSLV 740
              NR        D LG +LGKR   G ++
Sbjct: 726 VYRNRDIVETLSLDALGEYLGKRARKGKIL 755


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/753 (35%), Positives = 447/753 (59%), Gaps = 25/753 (3%)

Query: 7   SNSNTLVEENVKAVSL-RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ N L  E ++ + L RFA E  YL Y+++ I++RA+P + DG KPV RRII+AM+++G
Sbjct: 5   TDKNKLSLEGIEQMPLERFA-ENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAMAKLG 63

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
           +   A   KSAR VGEV+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G++ D  
Sbjct: 64  IGPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDVEDPK 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  ++++LQ ++   VDF   ++    EP   P++ PN+L NGT+GIA
Sbjct: 124 SFAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGTTGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+  AA+ L++NPE S+  L++++ GPD+P G  I+  +  +++ Y 
Sbjct: 184 VGMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLLKMYE 243

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R RA + VE+ G     IVV+ +P+QV   ++ ++IA+L+  K++P++ D+ + 
Sbjct: 244 TGKGIVRQRAVYKVEKEG-----IVVSALPFQVSGGQVEKQIADLMAKKKLPMVSDLINA 298

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D D LM  +F ++D+E+ + +N+N+L +   PQV  L  IL 
Sbjct: 299 SDHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLKQILS 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R++ + +R S R+  ++RR+ +L+GLL+ +LN+DE+I IIR E+ PK  ++ RF+
Sbjct: 359 EWLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENPKAKLIERFN 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE QV+ IL  +LR L +LEE +IK E + LLAEK+K++SLL S  +    I  EI   
Sbjct: 419 LTEAQVEYILETKLRQLARLEEMKIKEEQEKLLAEKKKLESLLGSQARLKTFIKKEILAD 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +++        RR    E S A  A  +  ++   P+TV++S  GW+R    ++ D   
Sbjct: 479 VKLYGDE-----RRCPVVERSEA-VAFSEDDLMPSTPVTVILSKMGWVRQASEYNADAEH 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++ GD  K      +  + + ++  G+AY++    L S RG GE +   ++L   +  
Sbjct: 533 MTYRAGDGFKDKASGRSNQQAVFITNLGRAYSVDIRELPSARGQGEPLSSKVNLQQGEFA 592

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +  S    L+ S K   FI +  +I+   + G+  + + ++ K+   +K+   + D
Sbjct: 593 EYVIIGQSNDYFLLASDKAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDKSSD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKIC-EGLTWIDS 714
            +AV     KLLI+  + +P + RGKG +L S      D GI  V    +  EG + I  
Sbjct: 653 LLAVASRQGKLLIYKAEDLPVLPRGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSSIIIH 712

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            G R  N S +++   L  R   G  +P+GF +
Sbjct: 713 CGKRILNLSASEITERLSVRTKRGDTLPRGFQK 745


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDE-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDE-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+I IIR  D+PK
Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      VKEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 492 I------VKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
                 V  D   VA +  N +LL+F + ++  + S G+GV L
Sbjct: 663 PNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKSEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 266/753 (35%), Positives = 445/753 (59%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLELLLGSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   + +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L +    K    +L+ +    
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713
            +  +    ++L+FS++ +P++S+GKG   + + S +     +++   ++    T +   
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/754 (35%), Positives = 438/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L+  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + LIDNP   +++L+E + GPD+PT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E     +  +V++ +P+Q   S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYEME-----NGEVVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+VL P++  +D + LM  +F  +++E  + +N+NV+ +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGLKDMLA 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  FR+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF 
Sbjct: 356 EWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK+E   L  E+ K++ +L S ++    I  E+ + 
Sbjct: 416 LSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKLEQILGSERRLKTLIKKELEKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +   V    +A  +Q ++  EP+TVV+S +GW+R  K H +D  A
Sbjct: 476 AETY------GDDRRSPLVVRGESRALTEQELLPTEPVTVVLSEKGWVRCAKGHDIDAGA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +  + + + + G+A++     L S R  GE I    +L   + +
Sbjct: 530 LSYKAGDGFLCAAQGRSNQQSVFIDSSGRAFSTDTHTLPSARSQGEPITTRFNLAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ S  G  F+   +++I+  + GK  L + S  K     +V  D   
Sbjct: 590 EHVLLGEEQHHYLLASDAGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANP 649

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA--- 715
             +A+  E R +L+F +D +P++++GKG ++         +     I   L   DSA   
Sbjct: 650 SILAITNEGR-MLVFGLDALPQLAKGKGNKIIGIPSERAKNREELLIHLHLVPADSAVTL 708

Query: 716 ---GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKSSDLEHYRGERGRRGAKLPRGLQR 742


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/761 (35%), Positives = 448/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN +E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D  
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+I IIR  D+PK
Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      +KEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 492 I------IKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
                 V  D   VA +  N +LL+F + ++  + S G+GV L
Sbjct: 663 PNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAA 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/687 (37%), Positives = 425/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+ +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +AA+ LID+P+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLLIAYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRMNTLLKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L  DG++Y+L + ++ S R  GE I   +++N    I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGNDGRSYSLESHSMPSARSQGEPITGRLNINAGTSIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  + GK  + + +  ++   + +  +  D + 
Sbjct: 591 VMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++ +GKG ++
Sbjct: 651 TITNQGRMLLFPIKDLPQLGKGKGNKI 677


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 448/761 (58%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P  ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/400 (58%), Positives = 300/400 (75%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM  + L     F KSA+I
Sbjct: 16  AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRRLRLSSTGGFLKSAKI 75

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT 
Sbjct: 76  SGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTV 135

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E +L+G+DE++VDFR  Y+    EP V P+ +PNLLANG+SGIAVGMAT+IP HN+ E
Sbjct: 136 MSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIAVGMATNIPPHNIGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L LI +P    + L++Y+ GPDFPTGG+IVE  E+I  +YR GRG  R+RARW V
Sbjct: 196 LINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAYRTGRGSIRLRARWHV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E++GRG W  VVTEIPYQVQKS+L+E+IAELI  K+IP+L D+RDESA+D+R+VL PK +
Sbjct: 256 EDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRDESADDIRMVLEPKTK 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++DPDLLM  +F  SD+E RF LNMNVL  G  P+V  L   L+ +L  RR+VL RRS  
Sbjct: 316 NVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRAFLDFRRDVLIRRSKH 375

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++
Sbjct: 376 RMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALM 415



 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 219/328 (66%), Gaps = 1/328 (0%)

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILN+RLRSLR+LEE ++ +E D L+ E+  ++ LL S   QW +I  E+ EV
Sbjct: 482 LSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEELNEV 541

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ F+K    G+R TTF E + A+   L+ AMIE+EP+TVV S  GWIR++  H      
Sbjct: 542 KKTFTKGYKRGQRLTTFAEATEAEDVPLE-AMIEREPVTVVCSKMGWIRAMTGHIALDRE 600

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK+GD  +   HA TTD++L+  ++G+ YT+ A NL  GRG GE ++L++DL ++ +I
Sbjct: 601 LKFKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGGRGMGEPLRLMVDLPNDTEI 660

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
           V   V+    +LLV SS G+ F+V E E+IA TR GK  L V    K  +   V+G+ VA
Sbjct: 661 VDILVHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDPVKAMICKPVSGNAVA 720

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           VVGENRK+LIF +D++PEM RGKGVRLQ YKDGG+SDV  F +  GL+W+D AGR+   S
Sbjct: 721 VVGENRKVLIFMLDELPEMGRGKGVRLQKYKDGGLSDVRTFTLEAGLSWLDPAGRTRTVS 780

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            ++L  W+ KR G G + P+GFPR  KF
Sbjct: 781 SDELTEWVAKRAGSGRMAPRGFPRDNKF 808


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/745 (36%), Positives = 431/745 (57%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++GL+  A +KK
Sbjct: 10  DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLNASAKYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT IP 
Sbjct: 130 AKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+  A   L+DN +  +  +L ++ GPD+PT   I+  +  I + Y  GRG  ++R
Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQKLYETGRGSIKMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A +  E     S  +V+T +P+Q   ++++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 250 AVYSEE-----SGDVVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL EWL +R++ 
Sbjct: 305 VITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILTEWLQYRKDT 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP ++SRF L++ Q +AI
Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMSRFGLSDKQAEAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E D L AE++K+  LL S ++    I       KEI + +  
Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAAERDKLQQLLGSDRRLKTLIK------KEILADAEK 478

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ ++  E +TVV+S +GW R  K H +D   L +K GD 
Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEGLSYKAGDG 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +    + + + G+ ++  A  L S R  GE +     +   +    A +   
Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESFQHAIMAQD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667
             K LV S  G  F+    ++++  + GK +L + +  K+     VT    D    +   
Sbjct: 598 DSKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTDWCLSISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721
            ++L+F +  +P + +GKG   + + S K     +   I   + +G      AG R+   
Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIKVGAGKRNMTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           S  DL  + G+RG  G+ +P+G  R
Sbjct: 718 SAEDLTHYQGERGRRGNKLPRGLQR 742


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/735 (36%), Positives = 440/735 (59%), Gaps = 29/735 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V+GK 
Sbjct: 16  EDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAKYKKSARTVGDVLGKF 75

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  R+PL+ GQGN+G+ D   S AA RYTEA+++  +E++L 
Sbjct: 76  HPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPDDPKSFAAMRYTEAKLSHFSEVLLS 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ P++L NG +GIAVGMAT IP HN +E+  A   
Sbjct: 136 ELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATDIPPHNAREVANACAL 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID P   +++++E++ GPD+PT   I+  +  + + Y  GRG  ++RA++ +EE     
Sbjct: 196 LIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTIKMRAKYHLEENE--- 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+T +P+Q   ++++E+IA  + AK++PL+ D+RDES  +   R+V+ P++  +D +
Sbjct: 253 --IVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNRVDTE 310

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM+ +F  +D+E ++ +N+N+L +   PQV PL GIL EWL  R++ + RR  +R+  +
Sbjct: 311 QLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFRKQTVTRRLQYRLDKV 370

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ IL+GLLIA+LNIDE+I IIR ED+PK  ++ RF+LT+ Q +AIL L+LR L +LE
Sbjct: 371 EARLHILQGLLIAFLNIDEVIEIIRYEDEPKKELIKRFALTDTQAEAILELKLRHLARLE 430

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502
           E ++K E + L  E+EK+  LLNS ++    I       KEI + +   G  RR+   E 
Sbjct: 431 EMKLKGEQEELEKEREKLSQLLNSDRRLKTLIK------KEILADAEKYGDERRSPLVER 484

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           + A KA  +  +   E +TVV+S +GW+R  K H VD   L +K GDS + A    +   
Sbjct: 485 AEA-KALSETELTPAEAVTVVLSAKGWVRCAKGHDVDGEKLSYKSGDSFQAAAQGKSNLP 543

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ L T G++Y+  A +L S R  GE +    ++   + +  A +       L+ S  G 
Sbjct: 544 VVFLDTSGRSYSCEAHSLPSARSQGEPLTGRFNMVAGEMVQHALMARDEQYYLLSSDAGY 603

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIP 679
            F+ +  ++++  + GK  L + +  K+   V+V       V VV    ++L+F I  +P
Sbjct: 604 GFVCQFKDLVSRNKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVSNEGRMLVFPIADLP 663

Query: 680 EMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           ++++GKG        +R QS ++  ++  +     E    + +  R       DL  + G
Sbjct: 664 QLAKGKGNKMISIPTLRAQSREEYVVA--VSVASPESTVTLHAGRRKLTLKPADLAHYHG 721

Query: 732 KRGGVGSLVPKGFPR 746
           +RG  G+ +P+G  R
Sbjct: 722 ERGRRGNKLPRGLQR 736


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/707 (37%), Positives = 398/707 (56%), Gaps = 47/707 (6%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK------- 73
           SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG A         
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLGFGGANGASGAKPV 79

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTE
Sbjct: 80  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTE 139

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++  L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPS
Sbjct: 140 ARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +ALI  P +S E+L   I GPD+P GG I+ S   I  +Y  GRG  +VR
Sbjct: 200 HNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISSTAEIAAAYSTGRGSLKVR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RI 295
           ARW +E++ RG W +VV E+P  V   R++E+I EL   K                   +
Sbjct: 260 ARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKAGKKALSQEQVQLKQTVL 319

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +L+ +RDES++D  VR+V  PK   +    L+ ++   + +E+   +N+ ++ +   P 
Sbjct: 320 SVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLESSASINLTMVGLDGKPT 379

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +L EW+  R+  + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+P
Sbjct: 380 QKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQSDEP 439

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  +++RFSL+E Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L S      
Sbjct: 440 KAALIARFSLSERQAEDILEIRLRQLARLEAIKIEQELKTLREEQGKLEEILGS------ 493

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             A     VKEI + +      R T  +   A+K  + +  +  EP+TVV+S +GW+R+ 
Sbjct: 494 PAALRRLLVKEIEADAKQFADPRRTLIQ---AEKKAVLEVKVLDEPVTVVVSAKGWVRAR 550

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H  D ++  FK GD L       T D +L   + G+ Y++P  +L   RG G+ +  L
Sbjct: 551 SGHGHDAASFAFKAGDGLYATFECRTVDTLLAFGSRGRIYSVPVASLPGARGDGQPLTTL 610

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           IDL     +V  F   +   LL+ +S G  F+     + +  + GK F+  +  E +   
Sbjct: 611 IDLESGTQLVHYFAGPANATLLLSASGGYGFLATVENMTSRLKAGKAFISCAEGETVCRP 670

Query: 654 VKVTG----------DHVAVVGENRKLLIFSIDQIP-EMSRGKGVRL 689
             V+G           HVA      ++L F I ++  + + G+G+ L
Sbjct: 671 SHVSGGTGATPLNPATHVACASTGGRILTFEIAELKLQAAGGRGLML 717


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+ KA  +  ++  +P+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTQPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/724 (37%), Positives = 409/724 (56%), Gaps = 32/724 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L   +   KSAR+VG+VIGK 
Sbjct: 42  ERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAASKHVKSARVVGDVIGKY 101

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +AEL+L  
Sbjct: 102 HPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAELLLAE 161

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+ +A   L
Sbjct: 162 IDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVADAVCHL 221

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I +P+  ++ +L  + GPDFP GG ++ S ++I ++Y  GRG  R+RARW VEE+ RG W
Sbjct: 222 IRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGSLRMRARWHVEELARGQW 281

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDESAED 308
            +++ E+P+ V  + ++  I  L   +                   + +LE +RDES++ 
Sbjct: 282 RVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLKQLVLGVLETVRDESSDK 341

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV----PQVMPLDGILK 362
             VRIVL P++     D  M  +   + +E    +NM ++  G V    PQ   L  IL+
Sbjct: 342 SPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHGPVHGGRPQQKNLVQILR 401

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R   + RR+  R+  +DRR+ IL G +IA+L+I+++I +IR  D+PKP ++  F 
Sbjct: 402 EWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIRVIRESDEPKPALIDAFG 461

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE ++I+ EL  L  E+EK+  LL+S       I      +
Sbjct: 462 LSEIQAEDILEIRLRQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKLI------L 515

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI   +   G  R T  E   A      +  +  EP+TV++S  GW+R+ + H +D +A
Sbjct: 516 KEITDDAKKYGDERRTLIESVAA--VAPAEISVPDEPVTVIVSKNGWVRARQGHGIDAAA 573

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +K GD     +   +T  +++L T G+AYT+    L  GRG G  I  L+D  +   +
Sbjct: 574 VTYKAGDFAFALVETRSTWPLVVLDTHGRAYTIRVAELPGGRGDGVPIATLVDFQNGAKL 633

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                 +     +  +S G  FI    E  +  R GK F+ V   EK+    +V G+ +A
Sbjct: 634 AQVVSAEPESAWMFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPARVLGERIA 693

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
            V EN +LL+F   ++   + G+GV + +  +G     +     E +  +   GR    +
Sbjct: 694 AVSENGRLLVFPRSEMKVQAGGRGVIVMALDEGESMVAVAAPADEAVLKVAGIGRGNKAT 753

Query: 723 ENDL 726
             DL
Sbjct: 754 SVDL 757


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/754 (35%), Positives = 447/754 (59%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + V+     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSVD-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   + +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREM 649

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID- 713
             +A+  E R +L+FS++ +P++S+GKG   + + S +     +++   ++    T +  
Sbjct: 650 SILAITNEGR-MLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTL 708

Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/755 (35%), Positives = 440/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + K++E++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDISKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E     +  +V+T +P+Q    +++E++A  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYKIE-----NGEVVITALPHQASGGKILEQVAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D LM  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR   R+  I  R+ IL+ L+ A+LNIDE+I IIR ED PK  ++SRF+
Sbjct: 356 EWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LTDIQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSDRRMKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   + KA  +Q +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGDD-----RRSPLVERGES-KALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+   ++V K   +
Sbjct: 590 EHVLLGDDDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711
            +  +    ++L+FS++ +P++S+GKG ++          ++  +S +        +T W
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSREELLSHLHVVPEDTAVTLW 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/701 (38%), Positives = 416/701 (59%), Gaps = 29/701 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+  +V L  +    YL YA++ +K RA+PD++DG KPV RR++ AM E+GL   A   K
Sbjct: 31  EDDDSVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVK 90

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S YD++VR+AQPF+ RYPL+ GQGNFG+ DGD+AAA RYTEA
Sbjct: 91  SARVVGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEA 150

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +AEL+L  + E  VDF+  Y+    EP   P++ P LL NG SGIAVGMAT IPSH
Sbjct: 151 RLTAIAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSH 210

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+  I++P   +++L+E+I GPD+P GG I+ S   I  +Y  GRG  RVRA
Sbjct: 211 NLREVAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRA 270

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP------------------ 296
           R+  EE+ RG+W +V  E+P  V  ++++ +I  L+  +  P                  
Sbjct: 271 RYEFEEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMAS 330

Query: 297 LLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            L+  RDES   +DVR+V  P +  +D +  +  +   + +ET  P+N+  + +   P  
Sbjct: 331 QLDRARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQ 390

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  ++ EW   R   + RR+ FR+Q  D R+ IL+G  I +LNIDE+I IIR  D PK
Sbjct: 391 KSLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPK 450

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++RF+L++ Q + IL +RLR L +LE  +I+ ELD L  E+E +  LL S      Q
Sbjct: 451 AALIARFTLSDRQAEDILEIRLRQLARLEGIRIEQELDKLRGEREGLLKLLGSDALLRRQ 510

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +   IRE+K    K  D   RRT     + A ++ +  A +  EP+TV+IS +GW R  +
Sbjct: 511 V---IREIKADAEKHGDA--RRTIILAATTASRSEV--AAVADEPVTVIISEKGWARVRQ 563

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +DLS + FK+GD    A    + D ++++S++G+A+T+   +L  GRG G  +   +
Sbjct: 564 GHGLDLSGVVFKDGDRAGSAQECRSVDSLVIISSEGRAFTVAIASLPDGRGMGAPLSSFV 623

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL   + I       +  +LL   + G  FI    ++++  + GK FL V     +   +
Sbjct: 624 DLGGGK-IAHVLTGRADDELLFAKTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPL 682

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
           ++ G DH+A + E+ +LL+F + Q+  ++ GKGV++   +D
Sbjct: 683 RIAGKDHLAALSEDGRLLVFPLAQMKRLASGKGVQIIGLRD 723


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/753 (35%), Positives = 443/753 (58%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKARAVYAVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRI++ P++  +D D LM  +F  +D++  F +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPVRIIVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR + R+  +  R+ IL  L++A+LNIDE+I IIR ++ PK  ++SRF 
Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENPKTELMSRFQ 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DAIL+L+LR L KLEE +I SE D L  E++K++ LL+S ++    I  E+   
Sbjct: 416 ISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKLELLLSSDRRLKTLIKKELIHD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S + KA  +Q +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGDD-----RRSPLVERSES-KALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDGHA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+++      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAVGRSNQPAVFIGSTGRSFATDTHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+   +LV K   +
Sbjct: 590 EHLLLGDDEKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPQLVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDS 714
            +  +    ++L+FS++ +P++S+GKG ++     +  K+     +    + E ++    
Sbjct: 650 SILAITNEGRMLLFSMESLPQLSKGKGNKIIGIPTERAKNREELLIHLHVVPEDISVTLW 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/703 (37%), Positives = 408/703 (58%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VV E+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L ++++I IIR  ++PK
Sbjct: 372 KGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDVIRIIRESEEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      +KEI + +   G  R TF +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 492 I------IKEIETDAKQYGDDRRTFIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I   F   +   L++ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQSLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
                 V  D   VA + E  +LL+F I ++  + S G+GV L
Sbjct: 663 PNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVIL 705


>gi|332970389|gb|EGK09381.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella kingae ATCC
           23330]
          Length = 757

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/707 (37%), Positives = 417/707 (58%), Gaps = 38/707 (5%)

Query: 17  VKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           V A +L  A   E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   K
Sbjct: 3   VSADTLNLADYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLAHGAKPVK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEA
Sbjct: 63  SARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSH
Sbjct: 123 RLTPIAELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ L+  P + +  L++Y   PDF  GG I+ S + +   Y+ G+G  RVRA
Sbjct: 183 NLNEVTQAAIVLLKKPNLEVADLMKYCPAPDFAGGGHIITSAKDLQNIYQSGKGSVRVRA 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           R+ ++++ RG W ++V+E+P     ++++ +I E    K                   + 
Sbjct: 243 RYEIDKMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLD 302

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           L+E +RDES  +  VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P  
Sbjct: 303 LIEKVRDESDSEHPVRLVFEPKSSRVEPEHFINTLMAQTSLEGNVSINLVMMGMDNRPAQ 362

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EWL +R   + RR   R+ A+++R+ IL+G +IA+L+IDEII +IR  D+PK
Sbjct: 363 KNLKTILQEWLDYRVATVTRRLQHRLDAVEKRIHILEGRMIAFLHIDEIIKVIRESDEPK 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++++F+LTE Q + IL +RLR L +LE  +++SEL+ L  E+  +  LL     +   
Sbjct: 423 ADLIAKFNLTEIQAEDILEIRLRQLARLEGIKLESELNELRDEQSSLQHLLADENDKKKL 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      +KE+ + +   G  R T  E   A++ATL Q   + EPIT+++S +GWIR+  
Sbjct: 483 I------IKEMQADAKQFGDERRTLVEA--AERATLTQTTAD-EPITLILSQKGWIRARA 533

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H VDLS + FKEGD L+  L   T   +++L T G++YT+   ++  GRG G  +  LI
Sbjct: 534 GHDVDLSQIAFKEGDDLQQVLETRTVQPVIVLDTLGRSYTIDPADVPKGRGDGVPVGSLI 593

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EE 648
           D+     ++T          L+ +S G  FI +  ++ +  + GKT + + S       E
Sbjct: 594 DIQAAASVLTMIAGSVDEHYLLANSGGYGFICKLEDLHSRLKAGKTIMMLESGEVALLPE 653

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
           K+ L   +  D  + +     +LL F I ++  M++G+G++L S +D
Sbjct: 654 KVYLSSLINPDCKIVLATAQNRLLAFPIGEMKIMAKGRGLQLISLQD 700


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/687 (37%), Positives = 422/687 (61%), Gaps = 17/687 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE-----GNEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLELLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E + A KA  ++ ++  EPITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAGSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L  DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESHSLPSARSQGEPITGRLNIAAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++   K V  +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689
            +    ++L+F I  +P++ +GKG ++
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKI 677


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/741 (37%), Positives = 413/741 (55%), Gaps = 40/741 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 25  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 85  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 385 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI + ++++   + GK  + V S E +   V V          
Sbjct: 616 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 675

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            V +   N +LL FSI ++  M +G+G++L S  +G   + I        T +    R  
Sbjct: 676 KVVLASSNHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVGRRGA 735

Query: 720 NRSEN----DLLGWLGKRGGV 736
              E     D+ G  GK+G V
Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756


>gi|332304966|ref|YP_004432817.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/745 (35%), Positives = 439/745 (58%), Gaps = 23/745 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +K
Sbjct: 9   KDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSNNAKYK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP
Sbjct: 129 ESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIAVGMATDIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV+E+  A   L+DN +  + +LL ++ GPD+PT   I+  +  I + Y  GRG  ++
Sbjct: 189 PHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDIRKMYETGRGSIKM 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA +  EE G     I++T +P+Q    +++E+IA  + AK++P++ D+RDES  +   R
Sbjct: 249 RAVY-YEEAGD----IIITALPHQASGGKILEQIAAQMQAKKLPMVSDLRDESDHENPTR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL EWL  R++
Sbjct: 304 LLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILSEWLVFRKD 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  FR+  +  R+ IL+GL+IA+LNIDE+I IIR E+KPK V++  FSL++ Q +A
Sbjct: 364 TVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQVLMDTFSLSDIQAEA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI    E++    
Sbjct: 424 ILELKLRHLAKLEEMKIKGEQDALAKERDELQLILGSDRRLKTLIKKEILAAAELYGDD- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RR+   E S + KA  ++ +I  EP+TVV+S +GW R  K H VD+  L +K GD 
Sbjct: 483 ----RRSPIIERSES-KALTEKELIPSEPVTVVLSEKGWARCAKGHDVDVVGLSYKAGDK 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +  + + + T G+A++  A  L S R  GE I     +   + +    +   
Sbjct: 538 YLASSKGRSNQQAVFMDTSGRAFSCDAHVLPSARSQGEPITGRFSIVSGETVEHVVMGQD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             + L+ S  G  F+ + +++I+  R GK +L +    K+   + V  ++ D    +   
Sbjct: 598 EQQYLIASDAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSDWCLAISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721
            ++L+F +  +P + +GKG   + + S K     +   +   + +G      AG R    
Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVKVLAGKRGMTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           + +DL  + G+RG  G+ +P+G  R
Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/741 (37%), Positives = 413/741 (55%), Gaps = 40/741 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 25  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 85  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 145 INQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 385 FRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  +   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 556 EGDRLKQTIEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI + +++I   + GK  + V S E +   V V          
Sbjct: 616 TGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSLINPDC 675

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            V +   + +LL FSI ++  M +G+G++L S  +G   + I        T +    R  
Sbjct: 676 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVGRRGA 735

Query: 720 NRSEN----DLLGWLGKRGGV 736
              E     D+ G  GK+G V
Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/716 (37%), Positives = 406/716 (56%), Gaps = 36/716 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + N+N   EEN  AV +    EE YLAYA+S +K RA+P + DG KPV RRI+ A
Sbjct: 1   MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFA 55

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+
Sbjct: 56  MKEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG 
Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT +  HN++EI  A L ++DNP+ +    ++Y+ GPDFP GG ++     I+
Sbjct: 176 SGIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADIL 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV------------------QKSRL 282
            +Y  GRG  R+RARW VE + RG W I++ E+P+ V                  +  + 
Sbjct: 236 STYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKT 295

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I++   L+    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+N
Sbjct: 296 IDQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M ++     P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE
Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I +IRN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + 
Sbjct: 416 VIRVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L S  +     A EI++  E +  +     RRT    V R      Q+A +  EP+T+
Sbjct: 476 NILGSDNKLRKLTAKEIKQDAEKYGDN-----RRTLIEPVERVQGG--QKAFVVDEPVTI 528

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +IS  GWIR+ + H V+  ++ +K GD     +   T   I+LL T+G+ Y   A  +  
Sbjct: 529 LISKNGWIRARQGHGVERESIVWKSGDGEFAVIETRTVLPIVLLDTNGRCYAFDASTVPG 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G+G G  +  +I++ +   +  A       + L  +S    F+     ++A  + GK F+
Sbjct: 589 GKGDGIPLSSIIEVQNGAKLAHALSGKDDDRYLFATSNSYGFVAPLKGLVARPKAGKAFM 648

Query: 643 KVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K   E+   ++  +  D   HVAV     K L+F I ++ E    GKGVR+    D
Sbjct: 649 K--PEDGALILPPIKLDERTHVAVTSSENKFLVFPISEVNEYPNGGKGVRMMDIPD 702


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/703 (37%), Positives = 407/703 (57%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VV E+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++I IIR  + PK
Sbjct: 372 KGLAEILREWIVYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEDPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      +KEI + +   G  R TF +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 492 I------IKEIETDAKQYGDDRRTFIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I   F   +   L++ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
                 V  D   VA + E  ++L+F I ++  + S G+GV L
Sbjct: 663 PNKPAPVPADAYGVACLSEGGRMLLFQISELKTLASGGRGVIL 705


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/721 (37%), Positives = 402/721 (55%), Gaps = 46/721 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +IS+ +T   +  + + L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDPSISDFSTAGNDEGETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G A         KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI 
Sbjct: 61  MGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGDSAAA RYTEAR++++A L+L  +DE  VDF   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN+ EI  A +ALI  P ++ E+LL  + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---- 289
            S   I  +Y+ GRG  ++R+RW +EE+ RG W +VV E+P  V   R++E+I EL    
Sbjct: 241 SSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPK 300

Query: 290 --------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                         + A  + +L+ +RDES +D  VR+V  PK        L+ ++   +
Sbjct: 301 IKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R+  + RRS   +  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            I  L++DE+IAIIR  D+PK  +++R+SL++ Q + IL +RLR L +LE  +I  EL  
Sbjct: 421 QIVLLHLDEVIAIIRQADEPKAALMARWSLSDRQAEDILEIRLRQLARLEALRIGQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L   + K++ +LN      +  A     +KEI + +      R T  +   A+K  + + 
Sbjct: 481 LRDRQGKLEDILN------HPGALRRTLIKEIETDAKTFADPRRTLIQ---AEKKAVIEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R    H  + ++  FK GD L       T D +L    +G+ Y
Sbjct: 532 RVPDEPVTVVVSQKGWVRVRSGHGHEAASFAFKAGDGLYGTFECRTVDTLLAFGNNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ +  LI+L     ++  F   +   LL+ +S G  F+     +I+
Sbjct: 592 SVAVSLLPGARGDGQPVTTLIELEAGTQVLHYFAGPAQATLLLSNSGGYGFLATVEHMIS 651

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR 683
             + GKTFL ++  E         G           HVA      ++L F + ++  M+ 
Sbjct: 652 RQKGGKTFLTLAGGETPCPPSHAFGSTGSAPVLPATHVACASTGGRILTFELGELKTMAN 711

Query: 684 G 684
           G
Sbjct: 712 G 712


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VV E+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++I IIR  ++PK
Sbjct: 372 KGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I      +KEI + +   G  R T  +  R   A ++   I  EP+TV++S +GW+R+ +
Sbjct: 492 I------IKEIETDAKQYGDDRRTLIQEERRAAAEVK---IVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I   F   +   L++ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689
                 V  D   VA + E  +LL+F I ++  + S G+GV L
Sbjct: 663 PNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVIL 705


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/733 (37%), Positives = 435/733 (59%), Gaps = 23/733 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 19  EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVGDVLGKY 78

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYP I GQGN+G+ D   S AA RYTEA+++Q +E++L 
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSEVLLS 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   D++D ++    EPV  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 139 ELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP +  EK+ EYI  PD PT   I+   E +++    GRG +R+R+ + +E+     
Sbjct: 199 LIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRGSYRMRSVYRIEKNE--- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+T++PYQV  S++I +IA+ + AK++PL+ D+RDES      R+V+  ++  +D +
Sbjct: 256 --IVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQNPTRLVIVLRSNRIDAE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+  R+E + RR  + +  I
Sbjct: 314 AVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKETVTRRLQYHLNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GL+IAYLNIDE+I IIR E++PK  ++SRF++ + Q +AIL L+LR L +LE
Sbjct: 374 EKRLHILGGLIIAYLNIDEVIRIIREEEQPKAELMSRFNIDDIQAEAILELKLRHLARLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +++ E + L A+   I   L + +   +  A  I E+K+   K  D   RR+    V 
Sbjct: 434 EMEMRREQEELEAKAALIREQLANPE---SLKALIINELKDDAKKYGD--DRRSPI--VH 486

Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           RA+   + +Q  +  +P+TVV+S  GWIRS K H VD   L+F+ GD         +  R
Sbjct: 487 RAEATAMSEQDFMPADPVTVVLSEAGWIRSAKGHEVDAENLNFRAGDQYLSHAQGKSNQR 546

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           + +L   G++Y L   +L S RG GE +   +           F+ D   +++ +SSKG 
Sbjct: 547 VYVLDESGRSYALAINSLPSARGLGEPLSSKLSPASGVGFKQVFIADDETEVMALSSKGY 606

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            F  +  ++  N + GK FL +  +   M L       H+A++    +LLI  + ++P +
Sbjct: 607 GFKTQAKQLDTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLTSTGRLLILELSELPVL 666

Query: 682 SRGKGVRLQSYKDGGISDVICFK---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           ++GKG +L   ++    D I F      + +  + +  +      +DL  ++GKR   G 
Sbjct: 667 NKGKGNKLIQLEE---KDQIVFMTRLTLDEILQVVAGQQQLKLKGDDLQKYIGKRASKGQ 723

Query: 739 LVPKGFPRSGKFL 751
           L+P+G+ ++ K L
Sbjct: 724 LLPRGYQKANKLL 736


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/703 (37%), Positives = 406/703 (57%), Gaps = 37/703 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF- 68
           N    +N  A++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  +GL F 
Sbjct: 7   NAAGGDNGDAITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERLGLAFT 66

Query: 69  ---GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
              G    KSAR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPLI GQGNFG+ DGD 
Sbjct: 67  TAGGPKAMKSARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDG 126

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+  +  L+L  +DE  VDF   Y+    EP   P++ P +L NG SGIAV
Sbjct: 127 AAAMRYTEARLAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGASGIAV 186

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT IPSHN++E+  AA+ALI   ++S ++L   + GPD+P GG I+ +   I ++YR 
Sbjct: 187 GLATEIPSHNLREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIRDAYRS 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------ 293
           GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL   K            
Sbjct: 247 GRGSLKVRAKWKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKALSAEQ 306

Query: 294 ------RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                  + +L+ +RDES ++  VR+V  PK+R+++   L+  +   + +ET   +N+ +
Sbjct: 307 TQLKTTVLAVLDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSASINLTM 366

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +     P    +  +L EW+  R E + RR+  R+  +  R+ IL+G  +  LNIDE+I 
Sbjct: 367 VGADGRPTQKSMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNIDEVIR 426

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           IIRN D+PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+ +++ +L
Sbjct: 427 IIRNADEPKPALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKSLREEQGRLEEIL 486

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           NS        A +   VKEI + +   G  R T  +   A+K  + +  +  EP+TVVIS
Sbjct: 487 NS------PAALKRTVVKEIEADAKTHGDERRTLIQ---AEKKAVAEVKVVDEPVTVVIS 537

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           ++GW+R+ + H  D +A  FK GD+L       T D +L+  ++G+ Y++    L   RG
Sbjct: 538 SKGWVRARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVFGSNGRVYSVAVSGLPGARG 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ I  +I+L         F   +   LL+ ++ G   + +  ++ +  R GK FL ++
Sbjct: 598 DGQPITSMIELESGTQPQHYFAGPADATLLLANTGGYGLLAKAGDLQSRQRGGKGFLTLA 657

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQI---PEMSRG 684
             EK     +      +A +    +LL+F++D +   P+  RG
Sbjct: 658 EGEKPLPPSRADAAGQIACLSLGGRLLVFALDDLKLQPKGGRG 700


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/741 (36%), Positives = 413/741 (55%), Gaps = 40/741 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 25  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 85  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 385 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI + ++++   + GK  + V S E +   V V          
Sbjct: 616 TGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSLINPDC 675

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + +   + +LL FSI ++  M +G+G++L S  +G   + +        T +    R  
Sbjct: 676 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHVMVTTSPEFTVVSVGRRGA 735

Query: 720 NRSEN----DLLGWLGKRGGV 736
              E     D+ G  GK+G V
Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/693 (38%), Positives = 401/693 (57%), Gaps = 29/693 (4%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YLAYA+S +K RA+P + DG KPV RRI+ AM+EM L   +   KSAR+VG+V
Sbjct: 71  RYA-ERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVVGDV 129

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +AEL
Sbjct: 130 IGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAEL 189

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+ EA
Sbjct: 190 LLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAEA 249

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
              LI +PE +++ +L  + GPDFP GG ++ + ++I E+Y  GRG  R+RARW +EE+ 
Sbjct: 250 TCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIEELA 309

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDE 304
           RG W  +V E+P+ V  ++++ +I  L   +                   +  L+ +RDE
Sbjct: 310 RGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTVRDE 369

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++   VRIVL PK+   + D  M  +   + +ET   +NM ++     PQ   L  IL+
Sbjct: 370 SSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQILR 429

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+E+I +IR  D+PKP +++ F 
Sbjct: 430 EWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPALIAAFG 489

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE ++I+ EL  L  E+  +  LL+S       I  EI++ 
Sbjct: 490 LSDVQAEDILEIRLRQLARLEGFKIEKELAELKDERAGLQHLLDSRAAMTKLILKEIQDD 549

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RRT    V+    A +    +  EP+TV++S  GW+RS + H +D + 
Sbjct: 550 AKKYGDD-----RRTLVEAVAAVAPAEIS---VPDEPVTVIVSKNGWVRSRQGHGIDPAG 601

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +K GD     L   TT  ++++  +G+AYT+    L  GRG G  I  L++      +
Sbjct: 602 IAYKAGDFGFAVLETRTTWPLIVIDGNGRAYTVKVSELPGGRGDGAPITTLVEFQDGGKL 661

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                          +S G  F+   ++  +  R GK F+ +   EK+    KV GD +A
Sbjct: 662 AQVVTDTPDSVYFFANSGGYGFLCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFGDWIA 721

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
              EN ++L+F   ++   S G+GV + +  +G
Sbjct: 722 AASENGRILVFPRPEMKTQSGGRGVIVMALDEG 754


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/745 (35%), Positives = 434/745 (58%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++GL   A +KK
Sbjct: 10  DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLSANAKYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ +E++L  + +  VD+   ++   +EP V P++ P++L NG +GIAVGMAT IP 
Sbjct: 130 AKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+  A   L+DN +  +  +LE++ GPD+PT   I+  +  I + Y  GRG  ++R
Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYETGRGSIKMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + +EE G     +V+T +P+Q   ++++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 250 AVY-MEENGD----VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL EWL +R++ 
Sbjct: 305 VITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILSEWLQYRKDT 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP +++RF L++ Q +AI
Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMARFGLSDTQAEAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E D L  E++K+  LL S ++    I       KEI + +  
Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAEERDKLQQLLGSDRRLKTLIK------KEILADAEK 478

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ ++  E +TVV+S +GW R  K H +D   L +K GD+
Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEGLSYKAGDA 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +    + + + G+ ++  A  L S R  GE +     +   +      +   
Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESFQHVIMAQD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667
             K LV S  G  F+    ++++  + GK +L + +  K+     VT    D    +   
Sbjct: 598 ESKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSDWCLSISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721
            ++L+F +  +P + +GKG   + + S K     +   +   + +G      AG R+   
Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIKVGAGKRNMTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           + +DL  + G+RG  G+ +P+G  R
Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/753 (36%), Positives = 441/753 (58%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   +     ++L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   NQFTQPTEDYLALHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 62  AKFKKSARAVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L+ + E  VD++  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++EI  A + LID P+IS+++L+ ++ GPDFPT   I+  RE I + YR GRG
Sbjct: 182 TDIPPHNIKEIAYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE        V+T +P+QV  ++++E+IA+ + AK++P+LED+RDES  +
Sbjct: 242 SIRMRAVWKKEEGN-----AVITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+++ P++  +  + +M  +F  +D+E    +NMN++ + + P V  L  IL EWL 
Sbjct: 297 HPTRLIIMPRHHGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLVSILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  L RR  F +  I +R+ +LKGLL+A+LNIDE+I IIR ED+ K  ++SRF L+  
Sbjct: 357 FRRATLRRRLLFNLDKILKRLHVLKGLLVAFLNIDEVIHIIRTEDEQKSFLISRFGLSLI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+LR L KLEE  I++E D L  E   + SLL S K+  N I  +I++   ++
Sbjct: 417 QADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASEKKLNNLIKKDIQDDACLY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            ++     RR+   + + A K + +  ++  EP+TV++S  GW R  K H +D   L++K
Sbjct: 477 GQN-----RRSPLVQRT-ASKESNENEVLPSEPVTVILSKMGWARCAKGHEIDPVGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D+        +    +LL + G+ Y L    L   R  GE +   +       +    
Sbjct: 531 KSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHARHQGEPVMGKLTPPQGAVVKALM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVV 664
           + +     L+ S  G  FI   ++++A  R GK  + +    ++   L++     ++  +
Sbjct: 591 MAEPEQSYLMASDAGYGFICTFADMVAKNRGGKILMTLPEGAQILPPLLITHANHYLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVR----LQSYKDGGISDVICFKIC---EGLTWIDSAGR 717
               ++LIFS+  +P +S+GKG +    L +    G+  VI   +    + +T + S  R
Sbjct: 651 TALGRMLIFSMADLPTLSKGKGNKIISILSADWQAGLDRVIHLFMLPPNQSVT-LYSGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             + +   L  +  +RG  G+L+P+GF R  K 
Sbjct: 710 KLHLTHQHLQKFCSQRGKRGTLLPRGFQRIDKI 742


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/743 (36%), Positives = 437/743 (58%), Gaps = 29/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  ++R
Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE+  +  +RI
Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+L++ Q DAI
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E  + ++    
Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              R +   E  R +   + ++  +  P+TV++S  GW+R  K H +D  +L +K GD+ 
Sbjct: 480 ---RMSQLVE--REEAKMISES--DMTPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDNY 532

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++Y L   +L S R  GE +   ++L     I    +    
Sbjct: 533 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 592

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668
            +LL+ S  G  FI +  ++IA  + GK  + +    K+   K ++  T   VA+    R
Sbjct: 593 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721
            +LIF    +P +S+GKG ++ +       D       ++       L +  S  R    
Sbjct: 653 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 710

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
              DL  +  +RG  GS +P+G 
Sbjct: 711 KPEDLQKFRAERGRKGSTLPRGL 733


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/695 (37%), Positives = 416/695 (59%), Gaps = 15/695 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++  S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+GL   A  KK
Sbjct: 9   EGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKSTAKHKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G++D   S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ ++L+L+   +  VD+   ++   +EP V P++ P++L NGTSGIAVGMAT IP 
Sbjct: 129 AKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +AL+DN  ++ ++L E++ GPD+P   +++      +  Y  G G  R R
Sbjct: 189 HNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGSGSIRQR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + VEE       +V+  +P+QV  ++++E+IA  + AK++P++ D+RDES  +  +R+
Sbjct: 249 ANYFVEE----GVNVVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDHENPIRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  +++ +D +  M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL +R E 
Sbjct: 305 VVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLKTMLTEWLVYRTET 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +  R+ IL GLLIA+LNIDE+IAIIR EDKPKPV++ RF L++ Q +A+
Sbjct: 365 VRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPVLMERFGLSDTQAEAV 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E + L AE++KI+ +L S  +    +       KE+ S +  
Sbjct: 425 LELKLRQLAKLEEMRIRGEQEELEAERKKIEKILGSAARMKTLVK------KELLSDAEA 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R +    ++  +A  +Q ++  E ITVV+S  GW+R+ K H VD   L +K GD+ 
Sbjct: 479 YGDDRRSPLSDAKQAQAMSEQDLLPSESITVVLSENGWVRAAKGHDVDGRTLGYKSGDAF 538

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L   G+AY+LPA +L S R HGE +   +            +    
Sbjct: 539 CSQALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQVMLGQPK 598

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
            + ++ SS G  FI E   + +  + GK  + +    ++    +V  ++ V VV +  ++
Sbjct: 599 EQYVLASSAGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDEPRM 658

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFK 704
           L+F + ++P +S+GKG +L     G  +  +  FK
Sbjct: 659 LVFEMSELPVLSKGKGNKLMQMPKGVSVKAIFAFK 693


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/745 (35%), Positives = 439/745 (58%), Gaps = 23/745 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +K
Sbjct: 9   KDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSNNAKYK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP
Sbjct: 129 ESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIAVGMATDIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNV+E+  A   L+DN +  + +LLE++ GPD+PT   I+  +  I + Y  GRG  ++
Sbjct: 189 PHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIRKMYETGRGSIKM 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA +  EE G     I++T +P+Q    +++E+IA  + AK++P++ D+RDES  +   R
Sbjct: 249 RAVY-YEEAGD----IIITALPHQASGGKVLEQIAAQMQAKKLPMVSDLRDESDHENPTR 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL EWL  R++
Sbjct: 304 LLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILSEWLIFRKD 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR EDKPK V++  FSL++ Q +A
Sbjct: 364 TVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPKLVLMDTFSLSDIQAEA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI    E++    
Sbjct: 424 ILELKLRHLAKLEEMKIKGEQDELAKERDELQLILGSDRRLKTLIKKEILAAAEMYGDD- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RR+   E S + KA  ++ +I  E +TVV+S +GW R  K H VD+  L +K GD 
Sbjct: 483 ----RRSPIIERSES-KALSEKELIPSEAVTVVLSEKGWARCAKGHDVDVVGLSYKAGDK 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +  + + + T G+A++  A  L S R  GE I     +   + +    +   
Sbjct: 538 YLASSKGRSNQQAVFMDTSGRAFSCDAHLLPSARSQGEPITGRFSIVSGESVEHVVMGQD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             + L+ S  G  F+ + +++I+  R GK ++ +    K+   + V  ++ D    +   
Sbjct: 598 EQQYLIASDAGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSDWCLAISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721
            ++L+F +  +P + +GKG   + + S K     +   +   + +G      AG R    
Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIKVLAGKRGMTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           + +DL  + G+RG  G+ +P+G  R
Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/718 (37%), Positives = 410/718 (57%), Gaps = 38/718 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A   K
Sbjct: 12  EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 72  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSH
Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGIAVGMATEIPSH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+ALI +  ++   L +YI GPDFP GG I+ S   I + Y  GRG  +VRA
Sbjct: 192 NLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +E++ RG W +VVTE+P      +++E+I EL   K                   + 
Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTMLG 311

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+ ++     P+ 
Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+E+I IIR  D+PK
Sbjct: 372 KGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D LL S      +
Sbjct: 432 AALIQAFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQAELDVLLKS------E 485

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                R VKEI + +   G  R T  +  R   A ++   +  EP+TV++S +GW+R+ +
Sbjct: 486 TMMRRRIVKEIETDAKQFGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589
            H  D +   FK GD+L       TTD +L+  T      G+ Y++   NL  GRG G  
Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L     I       +   +L+ +  GN F+ +  +++   + GK FL +   ++
Sbjct: 603 LTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703
                 V  D    A +  N +LL+F + ++  + S G+GV L    K+  ++  + F
Sbjct: 663 PNKPAAVPEDAYGAACLSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLAQALAF 720


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/717 (36%), Positives = 405/717 (56%), Gaps = 63/717 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +        A   KSAR+VG+V
Sbjct: 28  YLEYALSVVKGRALPDVTDGLKPVQRRILYAMDRMGLSYSGPNHNTAAKPVKSARVVGDV 87

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++  L
Sbjct: 88  LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPQQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 207

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI  P++S E+L + I GPD+P GG I+ S   I ++YR GRG  ++RARW +EE+ 
Sbjct: 208 CVALIKRPQLSDEELFQIIPGPDYPGGGQIISSASDIQDAYRTGRGSLKLRARWKIEELA 267

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I ++                  + A  + +L+ +RDE
Sbjct: 268 RGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDGVRDE 327

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VR+V  PK   +    L+ ++   + +E+   +N+ ++ +   P    L  +L+
Sbjct: 328 SSKDAPVRLVFEPKTGKVPQQELITALLAHTSLESSSSINLTMIGLDGRPVQKSLRLMLE 387

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R+  + RRS  R+  +  R+ IL+G     LNID++IAIIR  D+P+  ++  F+
Sbjct: 388 EWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPRQALIDAFA 447

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL +RLR L +LE  +I+ EL  L  E+ K++ +L S +    ++ C     
Sbjct: 448 LSERQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGS-ESTMRRLIC----- 501

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +      R T  +     K  + +  +  EP TV+IS++GW+R+ + H VD   
Sbjct: 502 KEIEADAKQFADARRTLIQEE---KKVVAEVKVVDEPTTVIISDKGWVRTRQGHGVDAGT 558

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  LI+L     I
Sbjct: 559 LSFKAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGGRGDGQPVTTLIELEAGTQI 618

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----------------- 645
           +  F       LL+  S G  F+    ++++  + GK F+ ++                 
Sbjct: 619 LYYFAGAEGTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCAPSTAYGVPMG 678

Query: 646 -------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
                   E+   L++  T  HV       ++L F I  +  M++ G+G+ L   +D
Sbjct: 679 ARAEPQEGEQGAGLLLPAT--HVICASTGGRILTFEIASLKHMAKGGRGLMLLDLED 733


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/645 (39%), Positives = 395/645 (61%), Gaps = 16/645 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +        RR+    V+RA+   L +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
                + D     ++ S  G  F+V+  ++ A  + GK  L + +
Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPN 633


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/692 (39%), Positives = 394/692 (56%), Gaps = 46/692 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+ AM  MGL +G   +       KSAR+VG+V
Sbjct: 30  YLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVVGDV 89

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L
Sbjct: 90  LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIASL 149

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D+  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++EI +A
Sbjct: 150 LLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREIADA 209

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+ NP+++ E+L   + GPD+P GG I+ S   I ++YR GRG  +VRARW +E++ 
Sbjct: 210 CVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIEDLA 269

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I EL                  + A  + +L+ +RDE
Sbjct: 270 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVVRDE 329

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L+
Sbjct: 330 SSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLDGKPVQKSLRRMLE 389

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R++ + RRS  R+  +  R+ IL+G     LNIDE+IAIIR  D+PK  ++ RF 
Sbjct: 390 EWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASDEPKAALIERFR 449

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L       N  +     V
Sbjct: 450 LSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA------NPASLRRLMV 503

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +      R T  +   ADK    +  +  EP+TVV+S +GW+R+ + H  D   
Sbjct: 504 KEIEADAKQFADARRTLIQ---ADKRATAEVKVVDEPVTVVVSQKGWVRARQGHGHDAGT 560

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD+L       T D ++   ++G+ Y++    L   RG G+ I  LIDL      
Sbjct: 561 FAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIDLEAGTQP 620

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
           V  F   +   LL+  S G  FI     + A  R GK F+ +   E++         +G 
Sbjct: 621 VHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGS 680

Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684
                  HV       ++L F I ++ +M+ G
Sbjct: 681 QPLAPATHVCCASAGGRILTFEITELKQMANG 712


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 397/692 (57%), Gaps = 46/692 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +    +       KSAR+VG+V
Sbjct: 29  YLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAKPVKSARVVGDV 88

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L
Sbjct: 89  LGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIAGL 148

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 149 LLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 208

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+  P++S E+L   + GPD+P GG I+ +   I ++YR GRG  +VRARW +E++ 
Sbjct: 209 CVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLKVRARWKIEDLA 268

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I EL   K                   + LL+ +RDE
Sbjct: 269 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAALLALLDGVRDE 328

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VR+V+ PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L+
Sbjct: 329 SSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDGRPVQKSLREMLQ 388

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+PK  +++RF 
Sbjct: 389 EWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQADEPKAALIARFH 448

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L +       +A EI   
Sbjct: 449 LSDRQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMAKEIEAD 508

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            ++F  +     RRT      +A+K  + +  +  EP+TVV+S +GW+R+ + H  +  +
Sbjct: 509 AKLFGDA-----RRTLI----QAEKKAVAEVKVLDEPVTVVVSEKGWVRARQGHGHEAGS 559

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L       T D +++  ++G+ Y++   +L  GRG G+ I  LI+L      
Sbjct: 560 FAFKSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGDGQPITTLIELEAGTQP 619

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
           V  F   +   LL+  S G  F+     + A  R GK F+ +   E++         +G 
Sbjct: 620 VHYFAGPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGS 679

Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684
                  HV       ++L F I ++  M +G
Sbjct: 680 QPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 277/755 (36%), Positives = 439/755 (58%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVE-----NGEIVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+++ P++  +D D LM  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I       
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSERRMKTLIK------ 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KE+     D G  RR+   E + + KA  QQ ++  E +TVV+S +GW+R  K H VD  
Sbjct: 470 KELIKDGEDYGDERRSPLVERTES-KALTQQELVAVESVTVVLSEKGWVRCAKGHEVDGQ 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +L +K GDS   +    +    + + T G+A+      L S R  GE I    +L     
Sbjct: 529 SLSYKAGDSFLRSAQGRSNQPSVFIDTSGRAFATDTHTLPSARSQGEPITTRFNLAPGTT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
           +    + D     L+ S  G  FI    ++++  + GK  L + +  K+ L  KV     
Sbjct: 589 MEHLLLSDDEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKP 648

Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID 713
              +A+  E R +L+FS+D +P++S+GKG ++         +    ++   +    T + 
Sbjct: 649 QSILAITNEGR-MLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTAVT 707

Query: 714 --SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 708 LWAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/692 (38%), Positives = 396/692 (57%), Gaps = 46/692 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +    +       KSAR+VG+V
Sbjct: 29  YLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAKPVKSARVVGDV 88

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L
Sbjct: 89  LGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIAGL 148

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 149 LLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 208

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+  P++S E+L   + GPD+P GG I+ +   I ++YR GRG  +VRARW +E++ 
Sbjct: 209 CVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLKVRARWKIEDLA 268

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I EL   K                   + LL+ +RDE
Sbjct: 269 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAALLALLDGVRDE 328

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VR+V+ PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L+
Sbjct: 329 SSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDGRPVQKSLREMLQ 388

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R+  + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+PK  +++RF 
Sbjct: 389 EWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQADEPKAALIARFH 448

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L       N  +     V
Sbjct: 449 LSDRQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILA------NPASLRRLMV 502

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T  +   A+K  + +  +  EP+TVV+S +GW+R+ + H  +  +
Sbjct: 503 KEIEADAKLFGDARRTLIQ---AEKKAVAEVKVLDEPVTVVVSEKGWVRARQGHGHEAGS 559

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L       T D +++  ++G+ Y++   +L  GRG G+ I  LI+L      
Sbjct: 560 FAFKSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGDGQPITTLIELEAGTQP 619

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
           V  F   +   LL+  S G  F+     + A  R GK F+ +   E++         +G 
Sbjct: 620 VHYFAGPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGS 679

Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684
                  HV       ++L F I ++  M +G
Sbjct: 680 QPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711


>gi|332994706|gb|AEF04761.1| DNA topoisomerase IV subunit A [Alteromonas sp. SN2]
          Length = 768

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/745 (35%), Positives = 431/745 (57%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++GL   A +KK
Sbjct: 10  DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHIADGLKPVQRRIIYAMSDLGLSANAKYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT IP 
Sbjct: 130 AKLSRFSEVLLDELGQGTVDWTPNFDGTLEEPCVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+  A   L+DN +  +  +LE++ GPD+PT   ++  +  I + Y  GRG  ++R
Sbjct: 190 HNVRELAYACAMLLDNSKAELSDVLEHVNGPDYPTEAEVITPKADIRKLYETGRGSIKMR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A +  EE G     IVVT +P+Q    +++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 250 AVFH-EENGD----IVVTALPHQASGGKILEQIAGQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++ P++  +D   LM+ +F  +D+E  + +N+N++ +   P+V  L  IL EWL +R+E 
Sbjct: 305 LITPRSNRIDTAQLMQHLFATTDLEKNYRVNLNMIGLDGRPKVKDLRTILSEWLVYRKET 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  +KPK  ++SRFSL++ Q +AI
Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYEKPKQELISRFSLSDKQAEAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E D L AE++K+ +LL S ++    I       KEI + +  
Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAAERDKLQTLLGSDRRLKTLIK------KEILADAEK 478

Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            G  RR+   E   A KA  ++ ++  E +TVV+S +GW R  K + +D   L +K GD 
Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGYDIDAEGLSYKAGDG 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              +    +    + + + G+ ++  A  L S R  GE +     L   +      +   
Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFALVGGESFEHVIMASD 597

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGDHVAVVGEN 667
             K LV S  G  F+    ++++  + GK +L   K +   K K V     D    +   
Sbjct: 598 EAKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPKAAKVMKPKPVTNPESDWCLTISNE 657

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNR 721
            ++L+F +  +P + +GKG +L +              +   + +G +   +AG R+   
Sbjct: 658 GRMLLFPLKDLPSLGKGKGNKLINIPGAKAQSREEFVTVLAVVPDGASLKVTAGKRNMTL 717

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           S +DL  + G+RG  G+ +P+G  R
Sbjct: 718 SASDLEHYYGERGRRGNKLPRGLQR 742


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/690 (38%), Positives = 413/690 (59%), Gaps = 36/690 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+VG+V+GK 
Sbjct: 27  ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L  
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+  AA+A+
Sbjct: 147 IDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 206

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I +P+I+  +L++ + GPDFP GG I+ S   I ++Y  GRG  +VRARW +E++ RG W
Sbjct: 207 IRHPKITHAELMQLVPGPDFPGGGQIISSEAEISQAYETGRGSLKVRARWKIEDLARGQW 266

Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308
            +V+TE+P      +++E+I E     + + K+             + LL+ +RDES +D
Sbjct: 267 QLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKSLTPEQLQTKQTLLGLLDAVRDESGKD 326

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   +  +L EW+ 
Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNATLNLVMVGADGRPRQKGIGEMLHEWIG 386

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RRS  R+  ++ R+ IL+G +I +LNIDE+I IIR  ++PK  ++  F L++ 
Sbjct: 387 FRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNIDEVIRIIRESEEPKAALIEAFKLSDR 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE  +I+ EL  L  EK K++ LL S      + A +   +KEI 
Sbjct: 447 QAEDILEIRLRQLARLEAIKIEKELSELRDEKAKLEELLGS------EPAMKRLLIKEIE 500

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T   + +  +AT  +A +  EP+TVV+S +GW+R+LK H +D +   FK
Sbjct: 501 ADAKQYGDDRRTL--IQQEKRATF-EARVVDEPVTVVVSQKGWVRALKGHGLDPAGFTFK 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L     ++  +
Sbjct: 558 AGDGLYAAFQCRTPDMLIAWGSKGRVYSVAVSQLPGGRGDGVPVTSLIELESGTHLMHYY 617

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVA 662
              +   LL+ SS G  FI +  ++++  + GK F+ +    +    M ++   T   VA
Sbjct: 618 AASAEQALLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPDAT--QVA 675

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691
            +    +LL+F +D++  +S  G+GV L +
Sbjct: 676 CLSGGGRLLVFGLDEMKTLSGGGRGVILMA 705


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/755 (36%), Positives = 446/755 (59%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  +  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTTQMSMDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE +L  + +  VDF   ++    EP+  P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + LID P  S+E LLE++  PD+PT   I+ S   + + Y 
Sbjct: 181 VGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLHKVYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIRMRAVYNVED-----GDVVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D   LM+ +F  +++E+ + +NMNV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDLRTMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R+  +D+R+ +L+GLLIA+LN+DE+I IIR E+ P+  +++RF 
Sbjct: 356 EWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVALMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL  RLR L +LEE +I+ E + LL E+E +   L S      Q+   +RE 
Sbjct: 416 LSEAQADYILETRLRQLARLEEMKIRGEQEELLRERETLAGYLGS----ETQLKGLVRE- 470

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            EI + +   G  RR+   E + A KA  +  ++  EP+TVV+S +GW+R+ K   VD S
Sbjct: 471 -EIMADADYYGDDRRSPLVERAEA-KALSESELMPSEPVTVVLSEKGWVRAGKGSDVDGS 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD+ K +    +    + + + G++++L A  L S R  GE +   +       
Sbjct: 529 TLSYKAGDTFKTSASGRSNQFAVFIDSTGRSFSLAAHTLASARTQGEPLSGKLTGQPGAS 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                + D     ++ S  G  F+V+  ++ A  + GK  + +S   K+ + + V+    
Sbjct: 589 YEWVVMPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADE 648

Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWI 712
              VA+  E R LL+F   ++P++ +GKG   + + S K     +++     + EG + +
Sbjct: 649 QWIVALTSEGR-LLMFKASELPQLGKGKGNKIISVPSDKAQAREELMTQLLVLDEGKSVV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            ++G R+      DL  +   RG  GS++P+G+ +
Sbjct: 708 ITSGKRTMTLKPGDLESYKSMRGKRGSMLPRGYQK 742


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/694 (38%), Positives = 395/694 (56%), Gaps = 50/694 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+ AM  MGL +G   +       KSAR+VG+V
Sbjct: 30  YLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVVGDV 89

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L
Sbjct: 90  LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIASL 149

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D+  V F   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++EI +A
Sbjct: 150 LLDEIDQGTVGFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREIADA 209

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+ NP+++ E+L   + GPD+P GG I+ S   I ++YR GRG  +VRARW +E++ 
Sbjct: 210 CVALVKNPKLADEELAAMVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIEDLA 269

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I EL                  + A  + +L+ +RDE
Sbjct: 270 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVVRDE 329

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L+
Sbjct: 330 SSKDAPVRIVFEPKTGKVPQQELITTLLAHTSLETSAPINLTMVGLDGKPVQKSLRRMLE 389

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R++ + RRS  R+  +  R+ IL+G     LNIDE+IAIIR  D+PK  ++ RF 
Sbjct: 390 EWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRTADEPKAALIERFR 449

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L       N  +     V
Sbjct: 450 LSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA------NPASLRRLMV 503

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +      R T  +   ADK    +  +  EP+TVV+S +GW+R+ + H  D   
Sbjct: 504 KEIEADAKQFADARRTLIQ---ADKRATAEVKVVDEPVTVVVSQKGWVRARQGHGHDAGT 560

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD+L       T D ++   ++G+ Y++    L   RG G+ I  LI+L      
Sbjct: 561 FAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIELEAGTQP 620

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM------------ 650
           V  F   +   LL+  S G  FI     + A  R GK F+ +   E++            
Sbjct: 621 VHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGS 680

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           + +V  T  HV       ++L F I ++ +M+ G
Sbjct: 681 QALVPAT--HVCCASAGGRILTFEITELKQMANG 712


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 271/764 (35%), Positives = 447/764 (58%), Gaps = 33/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            E +  +     RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K H +D +
Sbjct: 476 AETYGDN-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +       
Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
                + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     
Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEM----------SRGKGVRLQSYKDGGISDVICFKICEG 708
           + +A V    +LL+F I  +P++              G R+ S ++  ++D+    I +G
Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGKGNKIIGIPGERVAS-REEYVTDLAV--IAQG 705

Query: 709 LTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 706 ATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/737 (36%), Positives = 413/737 (56%), Gaps = 52/737 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 21  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARVVGEILGKY 80

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 81  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPLAELLLSE 140

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP   P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 141 INQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGEVAQAAVAL 200

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           + NP ++   L  +I  PDF  G  I+   + I + Y  G+G  RVRAR+ VE++ RG W
Sbjct: 201 LKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDVEKLARGQW 260

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            +VV+E+P     ++++ +I E    K                   + LLE +RDES   
Sbjct: 261 RVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEKVRDESDGE 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  + P+  + ++   + ME    +N+ ++ +   P    L  IL+EWL 
Sbjct: 321 HPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLKTILQEWLD 380

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R   + RR   R+ A+++R+ IL G +IA+L+ID++I +IR  D+PKP +++ F LTE 
Sbjct: 381 YRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEPKPELMAAFQLTEI 440

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE  +I+ EL+ L  E   + +LL    ++   I      +KEI 
Sbjct: 441 QAEDILEIRLRQLARLEGIKIERELNELREEAGSLKTLLGDENEKRKLI------IKEIQ 494

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  E   A++ATL Q   + EPIT+++S +GW+R+   H VD + + FK
Sbjct: 495 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPITLILSQQGWLRARAGHGVDAAQIAFK 551

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD+L+  L   T   +++  + G++YTL A  +  GRG G  I  LI+L     +V   
Sbjct: 552 EGDALQQVLETRTVQPVVVWDSHGRSYTLDAAEIPKGRGDGVPIASLIELPSQASVVALL 611

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
              +    L+    G  FI +  ++    + GK  L +   E     V++  D       
Sbjct: 612 AGAADDYYLLSGCHGYGFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIANDWLIAPDS 671

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + +   N++LL F + ++  M++G+G++L    DG         +   LT         
Sbjct: 672 RIVLASANKRLLAFPVSEMKIMAKGRGLQLIKLSDGD-----TLALASALT--------- 717

Query: 720 NRSENDLLGWLGKRGGV 736
             SE+  L  +GKRG +
Sbjct: 718 --SEHYTLHIIGKRGAI 732


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 262 RMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 441

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 442 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 495

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 496 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 553 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 612

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI +  +++   + GK  + V S E +   + V          
Sbjct: 613 TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 672

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
            + +   + +LL FSI ++  M +G+G++L S  DG
Sbjct: 673 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 708


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/746 (36%), Positives = 442/746 (59%), Gaps = 23/746 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V+ + L    E  YL Y++  I + A+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 4   LTHDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELGLTNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+E+  AA+AL+D P  S++ LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQSGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA    E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRAVGKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA+R
Sbjct: 299 TRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGLVEILTEWLAYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q 
Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+   + +  
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQTYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             D  RR T   E     KA  +   +  EP+T+V+S  GW+RS K H +D + L +K G
Sbjct: 479 --DRLRRLTERAEA----KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   A+   +   ++ + +  ++  +    L S R  GE +   +       I    + 
Sbjct: 533 DSFA-AVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGEPLTGKLTPPPGATIEQVLMA 591

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666
               KLL+ S  G  F+   ++++A  R GK  + +    +    +++ G  D +  +  
Sbjct: 592 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSITA 651

Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720
             ++L+F +  +P++S+GKG   V + + +     D + +      +    +    R   
Sbjct: 652 AGRMLMFPVADLPQLSKGKGNKIVSIPAAQAAAGEDKLAWLFVLPPQASVTLYVGKRKLT 711

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               DL   L +RG  G+ +P+G  R
Sbjct: 712 LRPEDLHEDLPERGRKGTQLPRGLQR 737


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 25  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 85  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 385 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   +      +KE+ 
Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLM------IKEMQ 498

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 499 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +    +   
Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKPIAML 615

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI +  +++   + GK  + V S E +   V V          
Sbjct: 616 TGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 675

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
            V +   + +LL FSI ++  M +G+G++L S  DG
Sbjct: 676 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 711


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/736 (36%), Positives = 421/736 (57%), Gaps = 52/736 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 13  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVVGEILGKY 72

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEA +T +AEL+L  
Sbjct: 73  HPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPLAELLLSE 132

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 133 INQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAVAL 192

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P + +  L+++I  PDF  GG I+   + +   Y  G+G  RVRAR+ ++++ RG W
Sbjct: 193 LKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQIDKMARGQW 252

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308
            ++V+E+P     ++++ +I E    K                   + L+E +RDES  +
Sbjct: 253 RVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKVRDESDSE 312

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P    L  IL+EWL 
Sbjct: 313 HPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKTILQEWLD 372

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R   + RR   R+ A+++R+ IL G +IA+L+IDEII +IR  D+PK  ++ +F LTE 
Sbjct: 373 YRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQDLIRQFGLTEI 432

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL +RLR L +LE  ++KSEL+ L  E+  + +LL+    +   I      +KE+ 
Sbjct: 433 QADDILEIRLRQLARLEGVKLKSELNELREEQGSLKNLLSDEDAKKKLI------IKEMK 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  E   A++ATL Q   + EPIT+++S +GWIR+   H VDLS + FK
Sbjct: 487 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPITLILSQKGWIRARAGHDVDLSQIAFK 543

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD L+  L   T   +++L   G++YT+   ++  GRG G  +  LI++      +   
Sbjct: 544 EGDDLQQVLQTRTVQSVVVLDDLGRSYTINPADVPKGRGDGVPLGSLIEIQAGAKALAML 603

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------TGD 659
              +    L+  S G  FI +  ++ + ++ GKT + + + E +   V V          
Sbjct: 604 SGSNDDHYLLAHSGGYGFICKLEDLHSRSKTGKTVMMLEAGETVLPPVPVYLSALINPDC 663

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            V +  E ++LL F I ++  M++G+G++L   +  G   +I   +              
Sbjct: 664 KVVLATEQKRLLAFPIGEMKIMAKGRGLQLIRLQ--GNDKLILINVL------------- 708

Query: 720 NRSENDLLGWLGKRGG 735
            ++EN  L  +GKRGG
Sbjct: 709 -KTENCTLDIVGKRGG 723


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +        A   KSAR+VG+V
Sbjct: 28  YLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVVGDV 87

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++  L
Sbjct: 88  LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN+ E+  A
Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 207

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +VRARW +EE+ 
Sbjct: 208 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 267

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I ++                  + A  + +L+ +RDE
Sbjct: 268 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 327

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P    L  +L+
Sbjct: 328 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 387

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+PK  ++  F+
Sbjct: 388 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIDAFN 447

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S +    ++ C     
Sbjct: 448 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 501

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T        K  + +  +  EP TV+IS +GW+R+ + H VD   
Sbjct: 502 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAGT 558

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  +I+L     +
Sbjct: 559 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 618

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
           +  F    + +LL+  S    F     ++++  + GK F+ +   E +     V G    
Sbjct: 619 LYYFAGSESTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 678

Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
                               HV       ++L F I ++  M + G+G+ L S +D
Sbjct: 679 ARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 734


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 276/730 (37%), Positives = 439/730 (60%), Gaps = 22/730 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR VG+V+GK 
Sbjct: 16  ERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKSARTVGDVLGKF 75

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYP I GQGN+G  D   S AA RYTE+++++ ++L+L 
Sbjct: 76  HPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPDDPKSFAAMRYTESKLSRYSDLLLS 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V++ D ++    EP   P++ PNLL NGTSGIAVGM T++P HN+ E+  A +A
Sbjct: 136 EINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPHNLTEVVSACIA 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+D P + ++ +++ I  PD+PT   IV S   + + Y  G G  ++RA +  E   +G+
Sbjct: 196 LLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRAIYQKE---KGN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+  +P+Q   +++I +IA  I AK++PL++DIRDES  +   RIV+ P++  +D D
Sbjct: 253 --IVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIVIIPRSNRVDVD 310

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +LM  +F  +++E  + +NMNV+ +   P V+ L  +LKEWL++R +V+  R ++R+  I
Sbjct: 311 VLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYRMKVVINRLTYRLDKI 370

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ ILKGLLIA+LNIDE+IAIIR  DKPK V++  F L++ QV+AIL L+LR L KLE
Sbjct: 371 LVRLHILKGLLIAFLNIDEVIAIIREHDKPKLVLIDHFKLSDIQVEAILELKLRYLAKLE 430

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I++E  +L  EKEK+  LL+S  +    I  E++ + + F        RR+      
Sbjct: 431 EIKIQAEQQDLALEKEKLKLLLSSDLRLKILIKKELKAIIKDFGD-----ERRSNIKRNV 485

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  +  +   E ITVV+S +GW+RS K +S+D + L++K GDS   ++   +   +
Sbjct: 486 NTAQAFSEDDLAPAENITVVLSEKGWVRSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPV 545

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + + + G++Y+L A +L S RG GE +   +        V   +  ++  +L+ S+ G  
Sbjct: 546 IFIDSTGRSYSLLANSLSSARGQGEPLTGKLSPPSEARFVDVIMGKASQNILLASNIGYG 605

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE 680
           FI    +++++ + GK F  +S   +M  ++ V       +A+V    +LLIF I ++P 
Sbjct: 606 FIATIGDLLSSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPI 665

Query: 681 MSRGKGVRL--QSYKDGGISDVICFKICEGLTW----IDSAGRSYNRSENDLLGWLGKRG 734
           +S+GKG +L   S KD          IC  L      + +  R +     DL  ++  R 
Sbjct: 666 LSKGKGSKLIQISTKDVKSRQEFVMNICILLETQHLKVIAGKRHFTIKFQDLSNYISSRA 725

Query: 735 GVGSLVPKGF 744
             G L+PKG+
Sbjct: 726 RCGKLLPKGY 735


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +        A   KSAR+VG+V
Sbjct: 28  YLEYALSVVKGRALPDVSDGLKPVQRRILYAMERMGLSYSGPNGNTAAKPVKSARVVGDV 87

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++  L
Sbjct: 88  LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN+ E+  A
Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 207

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +VRARW +EE+ 
Sbjct: 208 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 267

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I ++                  + A  + +L+ +RDE
Sbjct: 268 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 327

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P    L  +L+
Sbjct: 328 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 387

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+PK  ++  F+
Sbjct: 388 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIEAFN 447

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S +    ++ C     
Sbjct: 448 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 501

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T        K  + +  +  EP TV+IS +GW+R+ + H VD + 
Sbjct: 502 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAAT 558

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  +I+L     +
Sbjct: 559 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 618

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
           +  F      +LL+  S    F     ++++  + GK F+ +   E +     V G    
Sbjct: 619 LYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 678

Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
                               HV       ++L F I ++  M + G+G+ L S +D
Sbjct: 679 ARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 734


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/749 (36%), Positives = 425/749 (56%), Gaps = 35/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 32  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 92  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +AL+D+PE+    L++Y+ GPDFP GG I+     I+ +Y  G+G  RVRA+W VE
Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----IIAKRIPLLED--------------I 301
           ++ RG W  +VTE+P      +++ +I E     + A +  L +D              +
Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  +  VR+V  PK+   DPD  M  +   + +E    LN+ ++ +   P    L  
Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  RR  + RR + R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 451

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  +L++     + +   I
Sbjct: 452 AFGLTEIQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHVLDTP----DALTRLI 507

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R+  EI + +   G +R T  E+  A++A L Q   + EP+T+++S +GWIR+   H+V+
Sbjct: 508 RD--EIQADAAKYGDKRRT--EIKAAERAVLTQTTAD-EPVTLILSQKGWIRARVGHNVE 562

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L  L FK+GD L   +   T    ++L  +G+AYT+    + +GRG G  +  L+DL   
Sbjct: 563 LETLSFKDGDGLAAVVETRTVWNAIVLDHNGRAYTIDPATVPTGRGDGVPVASLVDLQDG 622

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                        + +V  S G  FI +  ++    + GK F+ + + E +   VK+   
Sbjct: 623 AKPAQLISGRDEDRFVVAGSGGYGFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAA 682

Query: 660 -----HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWID 713
                 +    ++ +LL F   ++ E+++G+G+ L +  DG  ++ +      + L    
Sbjct: 683 PLEQLQLVAASDSDRLLAFPAAELKELAKGRGLMLMALDDGAALTAIGLVAGGKALLSTT 742

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           S        +  L  + GKR   G L+PK
Sbjct: 743 SVRGKEAEEKLALEEFAGKRAKKGKLMPK 771


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     S+++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      +
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEIQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 547 TTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 753


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/743 (36%), Positives = 417/743 (56%), Gaps = 44/743 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFGLTEI 442

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI +  +++   + GK  + V S E +   + V          
Sbjct: 614 TGQPEQHYLLSGSGGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG-R 717
            + +   + +LL FSI ++  M +G+G++L S  +G  +  V+     E +  +++ G R
Sbjct: 674 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFI--VETVGKR 731

Query: 718 SYNRSEN----DLLGWLGKRGGV 736
                E     D+ G  GK+G V
Sbjct: 732 GAAHQEKLRICDIEGKRGKKGKV 754


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/753 (34%), Positives = 441/753 (58%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V+        I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVD-----GGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I       
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+   +   G  R +   +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 470 KELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713
            +  +    ++L+FS++ +P++S+GKG   + + + +     +++   ++    T +   
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/743 (36%), Positives = 417/743 (56%), Gaps = 44/743 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 82

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 442

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI +  +++   + GK  + V S E +   + V          
Sbjct: 614 TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG-R 717
            + +   + +LL FSI ++  M +G+G++L S  +G  +  V+     E +  +++ G R
Sbjct: 674 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFI--VETVGKR 731

Query: 718 SYNRSEN----DLLGWLGKRGGV 736
                E     D+ G  GK+G V
Sbjct: 732 GAAHQEKLRICDIEGKRGKKGKV 754


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +        A   KSAR+VG+V
Sbjct: 35  YLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVVGDV 94

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++  L
Sbjct: 95  LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 154

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN+ E+  A
Sbjct: 155 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 214

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +VRARW +EE+ 
Sbjct: 215 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 274

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I ++                  + A  + +L+ +RDE
Sbjct: 275 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 334

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P    L  +L+
Sbjct: 335 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 394

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+PK  ++  F+
Sbjct: 395 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIDAFN 454

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S +    ++ C     
Sbjct: 455 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 508

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +   G  R T        K  + +  +  EP TV+IS +GW+R+ + H VD + 
Sbjct: 509 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAAT 565

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  +I+L     +
Sbjct: 566 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 625

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
           +  F      +LL+  S    F     ++++  + GK F+ +   E +     V G    
Sbjct: 626 LYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 685

Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
                               HV       ++L F I ++  M + G+G+ L S +D
Sbjct: 686 ARAEHVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 741


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 32  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 90

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 91  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 150

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 151 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 210

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 211 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 270

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     S+++ +I E    K                   + L++ +RDE
Sbjct: 271 RGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 330

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 331 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 390

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 391 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 450

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      +
Sbjct: 451 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 504

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 505 KEIQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 561

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 562 TTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 621

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 622 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 681

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 682 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 739

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 740 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 768


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 263 RVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  F +  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 383 FRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 442

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659
                   L+  S G  FI + ++++   + GK  + V S E +   + V          
Sbjct: 614 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
            V +   + +LL FSI ++  M +G+G++L S  DG
Sbjct: 674 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 709


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/753 (34%), Positives = 441/753 (58%), Gaps = 23/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V+        I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVD-----GGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I       
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+   +   G  R +   +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 470 KELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713
            +  +    ++L+FS++ +P++S+GKG   + + + +     +++   ++    T +   
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/755 (34%), Positives = 432/755 (57%), Gaps = 27/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T+ ++ V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSNEVTINQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN    + +LLE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     +++T +P+Q    +++E+IA  +  K++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-TEENGE----VIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ D+PK  +++RF 
Sbjct: 356 EWLVFRRDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEPKQELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++ +   L S ++    I       
Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERDALQLTLGSDRRMKTLIK------ 469

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ + +   G  R +        KA  ++ ++  EP+TVVIS +GW R  K H VD   
Sbjct: 470 KELMADAEKYGDDRRSPIVQRGESKALSEKELVPSEPVTVVISAKGWARCAKGHDVDAPN 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K  DS   +    +    +   + G+ ++  A  L S R  GE +    ++   +  
Sbjct: 530 LSYKGDDSYLASAKGRSNQPAVFFDSSGRTFSCDAHTLPSARSQGEPLTGRFNMVSGEQF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659
               + + + K L+ S  G  F+   +++++  + GK +L + S  K+    LV  +  D
Sbjct: 590 EHVIMANESQKFLMASDAGYGFVGSFADMLSKNKAGKAYLSLPSAAKVLTPVLVNDIETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTW 711
               +    ++L+F +  +P + +GKG         + ++ ++  ++  I    C+    
Sbjct: 650 RCLAISNEGRMLLFPLRDLPSLGKGKGNKIINIPSAKAKTREEFIVALAIVPNGCD--VK 707

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           I +  R      +DL  + G+RG  G+ +P+G  R
Sbjct: 708 ILAGKRGMTLKASDLEHYYGERGRRGNKLPRGLQR 742


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/733 (36%), Positives = 415/733 (56%), Gaps = 20/733 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL    E+ YL YA+  I +RA+P L DG KPV RR+++AMSE+GL  G+ +KKSAR VG
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+ D   S AA RYTE+++T  
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++ + VD+   ++    EP   P++ PN+L NG SGIAVGM+T IP HN+ EI
Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  AL+ NP++S E LL+ +  PDFPTGG+++ +RE I   YR G G  R+RA + +E
Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKN 317
           +       IV+ E+PYQV  S++ E+I + I  K++  LE +RDES      R+VL P++
Sbjct: 248 KDN-----IVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +D   LM+ +F  +D+E    + +N++ +   PQ+ PL  IL+EWL +R + + RR S
Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +R+ A++ R+EIL GL IA+L +D +I IIR  D  +  ++    LT  Q +AILN+RLR
Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLEE  I  E   L+ E++ + +L+++   +   IA E+    + ++       RRT
Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADP-----RRT 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           TF +   A  A   +A    E +T+V+S   W+R  K+H VD   L +K GD   + + A
Sbjct: 478 TFIKPD-AKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAA 536

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +    +L   DG+ Y L   N+ S RG+GE +           IV A   D     ++ 
Sbjct: 537 KSDQTAILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLA 596

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676
           ++    F+V+ S+++A T+KGK  L V     + L+     + +    +N  + LIF   
Sbjct: 597 ANNAYGFVVKGSDLVAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPAR 656

Query: 677 QIPEMSRGKGVRLQS-----YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +P+ S+GKG ++ +     +  G     +     +    + S  RS   +  +   + G
Sbjct: 657 DLPQQSKGKGNKIMAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCG 716

Query: 732 KRGGVGSLVPKGF 744
            RG  G  +P+ F
Sbjct: 717 ARGQKGVYLPQPF 729


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/754 (36%), Positives = 441/754 (58%), Gaps = 25/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  +V+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVE-----NGEVVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D + +M  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I       
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKAEQSELEAERDKLQLLLSSERRMKTLIK------ 469

Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           KE+   S D G  RR+   E + + +A  +Q ++  E +TVV+S +GW+R  K H VD  
Sbjct: 470 KELIKDSEDYGDERRSPLVERTES-RALTEQELVPVESVTVVLSEKGWVRCAKGHEVDGK 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +L +K GD    +    +    + + T G+A+      L S R  GE I    +L     
Sbjct: 529 SLSYKAGDGFLRSAQGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLASGAT 588

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658
           +    + D     L+ S  G  FI    ++++  + GK  L + +  K+   + V K   
Sbjct: 589 MEHLLLSDEEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKA 648

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWID 713
             +  +    ++L+FS+D +P++S+GKG ++     +  K+     +    I E  +   
Sbjct: 649 QSILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTSVTL 708

Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            AG R      +DL  + G+RG  G+ +P+G  R
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      V
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQFGDVRRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   + V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      V
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 753


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 29  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 87

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 88  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 147

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 148 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 207

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 208 AIALLKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 267

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 268 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 327

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 328 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 387

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 388 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 447

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      V
Sbjct: 448 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------V 501

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 502 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 558

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 559 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 618

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 619 VAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 678

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 679 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIES 736

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 737 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 765


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/588 (42%), Positives = 374/588 (63%), Gaps = 14/588 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR ED PK  +++RF 
Sbjct: 356 EWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E + A KA  +  ++  EP+TVV+S +GWIR  K H +D + 
Sbjct: 476 AETYGDD-----RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWIRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPL 577


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 273/740 (36%), Positives = 441/740 (59%), Gaps = 31/740 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMS++GL   +  KKSAR VG+V+GK 
Sbjct: 22  ETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLGLSSSSKHKKSARTVGDVLGKY 81

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V LAQPF  RYPL+ GQGN+G  D   S AA RYTE+R++  A+++L 
Sbjct: 82  HPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPDDPKSFAAMRYTESRLSTYADILLS 141

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D  A ++   ++   +EP + P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + 
Sbjct: 142 ELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIAVGMATDIPPHNLTEVAQALVH 201

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+D+P+ ++++L E+I GPD+PT   I+     I + Y+ G G  ++RA++ V++     
Sbjct: 202 LLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYKTGNGRIKMRAKFHVDD----- 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IVVT +P+     +++E+IA  + AK++P++ D+RDES   E  R+V+ PK R+ +  
Sbjct: 257 GDIVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDESDHEEPTRLVIIPKART-NTT 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM+ +F  +D+E  + +NMN++ +   P+V PL  IL EWLA R + + +R S R+  +
Sbjct: 316 ALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILSEWLAFRIDTVRKRISHRLDKV 375

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + R+ +L+GLL A+LNIDEIIAIIRN D+PKPV++ RF+L++ Q  AIL ++LR+L KLE
Sbjct: 376 NDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPVLMERFNLSDRQATAILEIKLRNLAKLE 435

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +I++E D+L +E+++++ +L S K+    I    RE++       DL  RR+   E  
Sbjct: 436 EIKIQAEKDSLDSERQQLEKILASDKRLRTLIK---REIQADAKTHGDL--RRSPIFERK 490

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
            A+ A  ++ +I+ EP+TV++S  GW R+ K H +D+  L FK GD L +     +    
Sbjct: 491 EAE-AFSEEEVIQIEPMTVILSKNGWARTAKGHDIDIEKLKFKFGDDLLVTAPTMSNRPA 549

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +   + G++Y++    L S R  GE +   + L     I++    +     L+ ++ G  
Sbjct: 550 VFFDSSGRSYSIATHTLASARTMGEPLTGRLTLKPENHIISLVTGEDDDLFLLYTNTGFG 609

Query: 624 FIVEESEIIANTRKGKTFLKVS------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           FI   S +IA +R GK  L V       + E +K       D +A V  + +L+IF + +
Sbjct: 610 FITRFSNLIAKSRTGKAVLTVEEFSEFMAPEPLK---NPETDLLAAVTTSGRLIIFPVRE 666

Query: 678 IPEMSRGKGVRLQSYKDG-----GISDVICFKIC-EGLTWIDSAGRSYNR-SENDLLGWL 730
           +P M +GKG ++           G   +   K+  EG   +  AG+ + + S  +   + 
Sbjct: 667 MPIMEKGKGNKIIGIPKNQLSVPGTERIKTLKLLPEGAAIVIYAGKHFLKLSVGNQDNYR 726

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
            KRG  G  +P+GF     F
Sbjct: 727 SKRGYRGKKLPRGFQNVSHF 746


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 280/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      V
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/707 (37%), Positives = 411/707 (58%), Gaps = 38/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++ + ++L    E  YL YA+S +K RA+P+  DG KPV RRI++AM+EMGL   A   K
Sbjct: 14  DDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAMNEMGLGNNAKPVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQ+ YD+LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 74  SARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSRDGDGAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A+L+L  VD   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP H
Sbjct: 134 RLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATDIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A + LI +P   ++ ++ ++  PDFP G  I+    ++ E Y  GRG  +VRA
Sbjct: 194 NIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKEIYAGGRGSIKVRA 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIP 296
           RW +EE+ RG W +VV E+P     ++++E+I EL                  + A+ + 
Sbjct: 254 RWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGLSTEQQNLKAQVLA 313

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           +L+ +RDES ++  VR+V  PK+R++  +     +   + +ET   +N+  +     P  
Sbjct: 314 MLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSINLVSIDNAGRPGQ 373

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  +L +W+  R+  + RRS  R+  ++ R+ +L+G LIA+LNIDE+I +IR  D+PK
Sbjct: 374 RGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNIDEVIKVIRESDEPK 433

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK  +++LL    +   +
Sbjct: 434 PALIEAFKLSDRQAEDILEIRLRQLARLEKIKIEQELAKLAEEKADLEALLADEGKLKTR 493

Query: 475 IACEIREVKEIFSKSTD-LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           I  EIR       K TD  G  R T  E   A+KA+++  ++E EP TV++S + WIR+ 
Sbjct: 494 IIGEIR-------KDTDTYGDDRRTLIE--EAEKASVEVKVVE-EPTTVIVSQKFWIRNR 543

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGHGEAI 590
           + H  D +   FK GD+L  A    TTD   L       GK +++P      GRG G   
Sbjct: 544 QGHGHDAAQFGFKVGDALYAAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGGRGDGIPA 603

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           Q L++LN    +  A    +T  + +  S    F+     + +  + GK F+ ++  EK+
Sbjct: 604 QSLVELNGGS-LSHALAAPATQPVFLACSAAYGFLATAGNMESRMKAGKQFISLNPGEKL 662

Query: 651 --KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
               +++ T D VAV+ E+ +  +F +D++ ++S  G+GV+L    D
Sbjct: 663 LSPALLQPTDDRVAVLSESGRFHVFMLDELKQLSGGGRGVQLLPLDD 709


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 420/749 (56%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L ++   
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNSAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   + V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTTDSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  I  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 268/760 (35%), Positives = 422/760 (55%), Gaps = 39/760 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT   E+   + L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM EMGL   
Sbjct: 4   NTASAEHSDILLLAPYAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGLAAN 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +   KSAR+VGE++GK HPHGD S YD++VR+AQ F  RYPLI G GNFG+ DGD AAA 
Sbjct: 64  SKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +AEL+L  + +  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT
Sbjct: 124 RYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+  AA+AL+  P ++  +L+E+   PDF  GG I+   + +++ Y  G+G 
Sbjct: 184 EIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETGKGS 243

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK---------------- 293
            RVRAR+ +E++ RG W +V+TE+P      +++ +I E    K                
Sbjct: 244 IRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQLNTK 303

Query: 294 --RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              + L++ +RDES     VR+V  PK+  ++PD  + ++   + +E   P N+ ++ + 
Sbjct: 304 KLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMIGLD 363

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P    L  IL+EWL  R   + RR   R++ + +R+ IL G + A+L+IDE+I +IR 
Sbjct: 364 NRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRVIRE 423

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            D+PKP +++ F L+E Q + IL +RLR L +LE ++++ EL +L  E+  + +LL    
Sbjct: 424 ADEPKPELMAAFGLSEIQAEDILEIRLRQLARLEGFKLEQELADLREEEGYLKNLLADEG 483

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +   I      +KE+ + +   G  R T   V+ A++A L     + EP+T+++S +GW
Sbjct: 484 AKKKLI------IKEMQADAKQFGDPRRTL--VAEAERAALTHTTAD-EPVTLILSRQGW 534

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IRS   H +DLSA  FKEGD L+  L   T D +++L T G++YT+    +  GRG G  
Sbjct: 535 IRSRAGHGLDLSATAFKEGDELQQTLETRTVDPVVVLDTLGRSYTIDPAEIPGGRGDGVP 594

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  L++L     ++           L+  S G  FI +  +++   + GK  +K+ + E 
Sbjct: 595 LASLLELQPGASVLAMLAGQPQEHYLLAGSGGYGFIAKLGDLVGRVKAGKEVVKLEAGET 654

Query: 650 MKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVIC 702
           + +   V           + +    + LL F I ++  M++G+G++L S +      +  
Sbjct: 655 LLMPQPVHQSALINPDCRLVLASAEKHLLAFPIGELKVMAKGRGLQLMSLRGNDTLQLTA 714

Query: 703 FKICEGLTWIDSAGR--SYNRSENDLLGWLGKRGGVGSLV 740
             +     W+ S G+  + +R    +    GKRG  G ++
Sbjct: 715 L-VSTPDFWVCSRGKRGAAHRERLRVQDIEGKRGRKGRML 753


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 419/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   + V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  I  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IP HN+ E+ +A
Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      V
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------V 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 755


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  I  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/765 (36%), Positives = 424/765 (55%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K             
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I      +KE+ +     G  R T  E   A +A L Q   + EPIT+++S 
Sbjct: 480 DENEKRKLI------IKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
            E +   + V            +A   +NR  L F I ++  M++GKG+++    + G S
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 708

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                   E    I+S GR     ++ +   L   KRG  G L+P
Sbjct: 709 LTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/759 (36%), Positives = 419/759 (55%), Gaps = 62/759 (8%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   + V      
Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT---- 710
                 +A   +NR  L F I ++  M++GKG++           +I     E LT    
Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQ-----------IIGLNASESLTHTAV 714

Query: 711 ------WIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  I+S GR     ++ +   L   KRG  G L+P
Sbjct: 715 SSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  ++  F 
Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMEAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   +      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLM------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NTGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  I  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 416/745 (55%), Gaps = 41/745 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 35  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 94

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 95  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 154

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 155 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 214

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 215 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGRVRVRARYEIEKLARGQW 274

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 275 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 334

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 335 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 394

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 395 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFGLTEI 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+   ++   I      VKE+ 
Sbjct: 455 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------VKEMQ 508

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 509 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 565

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 566 EGDCLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 625

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660
                   L+ SS G  FI +  +++   + GK  +   S E +   V V          
Sbjct: 626 TGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDC 685

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S GR 
Sbjct: 686 KIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIESEGRR 743

Query: 719 YNRSENDLLGWL--GKRGGVGSLVP 741
               ++ +   L   KRG  G L+P
Sbjct: 744 GAAHKDRIPISLLEAKRGKKGRLLP 768


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 418/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IP HN+ E+ +A
Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI + ++++   + GK  +   S E +   + V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 755


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 271/734 (36%), Positives = 438/734 (59%), Gaps = 30/734 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A FKKSAR VG+V+GK 
Sbjct: 16  ERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKSARTVGDVLGKF 75

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+S+V +AQ F  RYP I GQGN+G  D   S AA RYTE+++++ A+L+L 
Sbjct: 76  HPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTESKLSRYADLLLL 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V++ D ++    EP   P++ PNLL NG SGIAVGMAT +P HN+ E+  A + 
Sbjct: 136 EINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPHNLIEVVSACIV 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+DNP I ++ +++ I  PD+PT   IV S   + + Y  G G  ++RA +  E   +G+
Sbjct: 196 LLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRAVYQKE---KGN 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+  +P+QV  +++I +I   + AK++PL++DIRDES  +   RIV+   +   D D
Sbjct: 253 --IVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIVIILHSNRFDVD 310

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM  +F  +++E  + +NMNV+ +   P+V+PL  +LKEWL++R +V+  R + R   I
Sbjct: 311 ALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYRMQVVTNRLTCRFDKI 370

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ ILKGLLIA LNI+E+IA+IR  DKPK V+++ F L   Q +AIL L+LR L KLE
Sbjct: 371 IVRLHILKGLLIALLNINEVIAVIREYDKPKLVLINHFKLNTIQAEAILELKLRHLAKLE 430

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502
           E +I++E   L+ E+++++ LL+S  +       +    KE+     D G  RR+     
Sbjct: 431 EVRIRTEQQELVLERKQLELLLSSNSR------LKSLIKKELKIIIKDFGDERRSNIKSN 484

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
               +A  +  ++  E +TVV+SN+GW+R +K H +D + L++K GDS   ++   +   
Sbjct: 485 VNVAQAFSEDNLVLAEDVTVVLSNKGWVRRVKGHDIDPTTLNYKAGDSYLTSVKGKSNKM 544

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ + + G++Y+L A +L + RG GE +   +        +   +  ++  +L+ S  G 
Sbjct: 545 VIFIDSTGRSYSLLAHSLSNSRGQGEPLTGKLSPPLGAQFIDIIMGKTSQNILLSSDVGY 604

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR-KLLIFSIDQIP 679
            FI    +++++ + GK FL +S   ++  V+ V    + +  +  NR +LLIFSI ++P
Sbjct: 605 GFIATFDDLLSSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALATNRGRLLIFSISELP 664

Query: 680 EMSRGKGVRL--------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWL 730
            +S+GKG +L        ++ ++   S  I F+  +      +AG+ Y   +  DL  ++
Sbjct: 665 MLSKGKGNKLIQIPVNSAKTRQEFVASVCILFETQQLRV---NAGKHYLTIKFQDLNNYI 721

Query: 731 GKRGGVGSLVPKGF 744
             R   G L+PKG+
Sbjct: 722 SNRACRGKLLPKGY 735


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 275/751 (36%), Positives = 417/751 (55%), Gaps = 53/751 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 7   ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 66

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 67  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 126

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 127 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 186

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 187 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 246

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 247 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 307 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 366

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 367 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 427 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 481 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 538 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 597

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660
                   L+  S G  FI + ++++   + GK  + V S E +   V V          
Sbjct: 598 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 657

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWI 712
             +A   +NR  + F I ++  M +GKG+++      +S    G+S        E    I
Sbjct: 658 KIIAATNQNRA-ISFPIGELKIMPKGKGLQIIGLNAGESMTHTGVS-------SETEILI 709

Query: 713 DSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
           +S G+     ++ +   L   KRG  G L+P
Sbjct: 710 ESEGKRGAAHKDRIPVSLLEAKRGKKGKLLP 740


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 416/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I  IR  D PK  +++ F 
Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKAIRESDDPKADLMAAFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +    
Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+ SS G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ L   L   KRG  G L+P
Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/696 (36%), Positives = 422/696 (60%), Gaps = 24/696 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GLD G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTE+++T+ ++L++  +    VD++  ++    EPV+FPSK P++L NG
Sbjct: 61  QDDPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           TSGIAVGMAT IPSHN+ E+ +A + +++NP+  I  LL+ I GPDF     I+ S+E +
Sbjct: 121 TSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y+ GRGGF+ +A W  E+       IV+  +PYQ   S+++E+IA+ ++ K+IP++ 
Sbjct: 181 EEIYKSGRGGFKAQAHWVKEKNN-----IVINALPYQASGSKILEQIADQMLKKKIPMVV 235

Query: 300 DIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+ DE    E VR+V+  K+  ++ D +M  +F  +D++  + +NMN++S+   P+V  L
Sbjct: 236 DLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFSL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             ++KEWL  R+  + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +
Sbjct: 296 VEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDI 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F L++ Q +AIL ++LR L KLE+ +++ E D LL E+ +I+ +LNS  +    I  
Sbjct: 356 TKAFKLSDIQANAILEIKLRQLAKLEQIKLEQERDALLEEQNEIEKILNSKTRLKTLIKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ F      G  R +    S   K   ++  +  E ITVV+S  GWIRS K H 
Sbjct: 416 ELLEIKDGF------GEDRKSPIRQSSDAKVFSEEDTLVTESITVVLSEAGWIRSAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +D S+L ++  D L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +
Sbjct: 470 IDPSSLAYRGEDKLQDFCQGKSNQIAVFLDSNGKAYSLPSHSLPSARGMGDPITGRVSAD 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                ++  + +   K +++++ G  +I E S +++N + G+ F+K+ ++ ++  V+KV 
Sbjct: 530 SGVKFISTVIGNDIDKFMIMNTAGYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVR 589

Query: 658 GDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708
            DHV  A V    +LLIF ID++P + +GKG ++ +        K+  +S      +   
Sbjct: 590 EDHVYIAAVSNIGRLLIFKIDELPVLGKGKGNKIINIPTPKFLAKEEYMSHAQLISLSSS 649

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           L  I+S  R       DL  ++  R   G+++P+G+
Sbjct: 650 LR-IESGKRFLTLKLKDLQNYISSRAKRGNMLPQGY 684


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/705 (37%), Positives = 401/705 (56%), Gaps = 59/705 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG A         KSAR+VG+V
Sbjct: 30  YLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGAKPVKSARVVGDV 89

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPH DQ+ YD+LVR+AQ F QRYPL  GQGNFG+ DGD AAA RYTEAR+ ++  L
Sbjct: 90  LGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAAMRYTEARLARITSL 149

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P  L NG SGIAVG+AT IPSHN++EI +A
Sbjct: 150 LLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATEIPSHNLREIADA 209

Query: 203 ALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            +ALI  N ++S E+LL+ + GPD+P G  I+     I ++YR GRG  +VRARW +E++
Sbjct: 210 CVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGRGSLKVRARWKIEDL 269

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W +VV E+P  V   +++E+I E+                  + A  + +L+ +RD
Sbjct: 270 ARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQLKAAMLSVLDVVRD 329

Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES++D  VR+V  PK   +  D  + ++   + +ET  P+N+ ++ +   P    L  +L
Sbjct: 330 ESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGIDGKPTQKSLRQML 389

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            EW+A R   + +RS FR+  +  R+ IL+G  +  LNIDE+IAIIR  + PK  +++RF
Sbjct: 390 NEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVIAIIRAAEDPKAALIARF 449

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q + IL +RLR L +LE  +I+ +LD L  E++K++ +L S       +  EI  
Sbjct: 450 NLSEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEA 509

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F        RRT      +A+K  + +  +  EP+TV++S +GW+R+ K  + + +
Sbjct: 510 DAKTFEDP-----RRTLI----QAEKRAVAEVKVVDEPVTVIVSQKGWVRAQKGWASEKA 560

Query: 542 A--------LHFKEGDSLKIALHAHTTDRILLLSTDG----KAYTLPAGNLLSGRGHGEA 589
           A          FK GD+L  A    + D +L+  +      + YT+P  +L   RG G+ 
Sbjct: 561 AGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGARGDGQP 620

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L+    +   F       +L+ ++ G  FI     +++  R GK F+ V   E+
Sbjct: 621 VTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQ 680

Query: 650 M---KLVVKVTG-------DHVAVVGENRKLLIFSIDQIPEMSRG 684
           +    LV   +G        HVA      ++L F I ++  + +G
Sbjct: 681 LCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 725


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/698 (37%), Positives = 418/698 (59%), Gaps = 23/698 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ EA + LI++P  S+  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSDL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y+ GRG  ++RA W  E    GS  IV++ +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYQTGRGSIKMRAVWHKE----GS-DIVISALPHQVSGAKLLEQIAGQMRAKKLPMVE 235

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   P+V  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW+  RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK ++
Sbjct: 296 TQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEPKGIL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF +++ Q DAIL+ +LR L KLEE +I+ E D L  E+ K++ LL S ++    +  
Sbjct: 356 MERFGISDIQADAILDTKLRHLAKLEEVKIRGEQDALDKERAKLEELLGSERRLNTLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++   E +        RR+   E + A KA  ++ ++  E ITVVIS +GW+R  K H 
Sbjct: 416 ELKADAEKYGDD-----RRSPIVERAEA-KALTERDLMPNEMITVVISEKGWVRHAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD  +L++K GD+        +  ++  L +DG++Y+L A  L S RG GE I   +++ 
Sbjct: 470 VDCHSLNYKSGDNYLAHACGKSNQQVAFLGSDGRSYSLEAHTLPSARGQGEPITGRLNIT 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVV 654
               I    + +     LV S  G  F+ + S++++  R GK  + + +  ++   + V 
Sbjct: 530 EGSSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVN 589

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGL 709
            +  D +  V    ++L+F I  +P++S+GKG   + + S K     +V+     I  G 
Sbjct: 590 DLQHDEILAVTNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKAREEVVSHLLAIPSGS 649

Query: 710 TWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +    AG R       DL  + G+RG  G+L+P+G  R
Sbjct: 650 SITLYAGKRKLGLKPTDLDNFRGERGRRGALLPRGLQR 687


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/765 (36%), Positives = 424/765 (55%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+         R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLILG-------RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K             
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I      VKE+ +     G  R T  E   A +A L Q   + EPIT+++S 
Sbjct: 482 DENEKRKLI------VKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+  S G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
            E +   + V            +A   +NR  L F I ++  M++GKG+++    + G S
Sbjct: 653 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                   E    I+S GR     ++ +   L   KRG  G L+P
Sbjct: 711 LTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/765 (36%), Positives = 422/765 (55%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E    K             
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I      +KE+ +     G  R T  E   A +A L Q   + EPIT+++S 
Sbjct: 480 DENEKRKLI------IKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
            E +   + V            +A   +NR  L F I ++  M++GKG+++    + G S
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 708

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                   E    I+S GR     ++ +   L   KRG  G L+P
Sbjct: 709 MTHTAVSSEPEILIESEGRRGAAHKDRIPISLLEAKRGKKGKLLP 753


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/749 (36%), Positives = 416/749 (55%), Gaps = 42/749 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 17  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 76  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IP HN+ E+ +A
Sbjct: 136 LLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 195

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+ S + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKLA 255

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 376 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +
Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 490 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +    
Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKP 606

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V           L+  S G  FI +  +++   + GK  +   S E +   V V      
Sbjct: 607 VAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +A   +NR  + F I ++  M++GKG+++    + G S        E    I+S
Sbjct: 667 NPDCKIIAATSQNRA-IAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724

Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            GR     ++ +   L   KRG  G L+P
Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 753


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/755 (36%), Positives = 420/755 (55%), Gaps = 42/755 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK 
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ RG W
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++VTE+P     ++++ +I E    K                   + L++ +RDES   
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+EWL 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F LTE 
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 439

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      +KE+ 
Sbjct: 440 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 493

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS   FK
Sbjct: 494 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 550

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +    V   
Sbjct: 551 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 610

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660
                   L+ SS G  FI + ++++   + GK  +   S E +   + V          
Sbjct: 611 TGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDC 670

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             +A   +NR  L F I ++  M++GKG+++    + G S        E    I+S GR 
Sbjct: 671 KIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIESEGRR 728

Query: 719 YNRSENDLLGWL--GKRGGVGSLVPK-GFPRSGKF 750
               ++ +   L   KRG  G L+P  G P +  F
Sbjct: 729 GAAHKDRIPVSLLEAKRGKKGKLLPHIGQPETAFF 763


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/696 (37%), Positives = 400/696 (57%), Gaps = 40/696 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK----K 74
           A++L    E  YL YALS +K RA+PD+ DG KPV RRI+++M  MGL F  A      K
Sbjct: 20  ALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQRMGLAFAGAGGAKPVK 79

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEA
Sbjct: 80  CARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEA 139

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A L+L  +DE  +DF   Y+    EP + P++ P +L NG SGIAVG+AT +PSH
Sbjct: 140 RLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLNGASGIAVGLATEVPSH 199

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALI +  +S E L   +  PD+P GG I+ S   I E+YR GRG  +VRA
Sbjct: 200 NLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETDIREAYRTGRGSLKVRA 259

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296
           RW +EE+ RG W +VVTE+P      R++E+I EL   K                   + 
Sbjct: 260 RWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGKKALSTEQVQNKALLLS 319

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           +L+ +RDES +D  VR+V  P++R+++   L+  +   + +E   P+N+ ++     P  
Sbjct: 320 VLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECSAPINLTMVGADGRPTQ 379

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  R+  + RR+  R+  +  R+ +L+G  +  LNIDE+I IIR  D+PK
Sbjct: 380 KSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLLNIDEVIRIIRESDEPK 439

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWN 473
             +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K+D +L N G  +  
Sbjct: 440 AALIARFALSDRQAEDILEIRLRQLARLEAIRIEQELAELRTEQGKLDDILANPGTLRRL 499

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I       +EI + +   G  R T  +   A+K  + +  +  EP+T+V+S +GW+R+ 
Sbjct: 500 LI-------REIEADAKAHGDARRTLIQ---AEKRAVVEVKVVDEPVTLVVSQKGWVRAR 549

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H  D +   FK GD L       T D +++L +DG+ Y++P   L   RG G  I  L
Sbjct: 550 TGHGHDPAGFAFKAGDGLYGTFECRTVDALVVLGSDGRVYSVPVNTLPGARGDGVPITSL 609

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L     I+      ++  LL+  S G   + +  ++I+  + GK FL +   E+    
Sbjct: 610 IELEAGSQILHYIAGSASTPLLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPP 669

Query: 654 VKVTGDH--VAVVGENRKLLIFSIDQI---PEMSRG 684
           + V  +H  VA +  + +LL+F +D++   P   RG
Sbjct: 670 LPVALEHRQVACLSSSGRLLVFGLDELKRQPNGGRG 705


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 277/750 (36%), Positives = 418/750 (55%), Gaps = 43/750 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSW-CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRD 303
           RG W  ++VTE+P     ++++ +I E    K                   + L++ +RD
Sbjct: 258 RGQWRRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 317

Query: 304 ES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I      
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------ 491

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS
Sbjct: 492 IKEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+ SS G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 609 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 668

Query: 661 -------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +A   +NR  L F I ++  M++GKG+++    + G S        E    I+
Sbjct: 669 INPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIE 726

Query: 714 SAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
           S GR     ++ L   L   KRG  G L+P
Sbjct: 727 SEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/713 (36%), Positives = 402/713 (56%), Gaps = 37/713 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + +++ EN   +  ++A E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  
Sbjct: 36  TPSVLSENDTLILGQYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMGLTA 94

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA
Sbjct: 95  GAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAA 154

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +AEL+L  + +  VDF   Y+    EP + P++ P +L NG SGIAVGMA
Sbjct: 155 MRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGASGIAVGMA 214

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +AA+AL+  P +    L+E+I  PDF  GG I+     + + Y  G+G
Sbjct: 215 TEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQIYETGKG 274

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--------------- 293
             RVRAR+ +E + RG W ++VTE+P     ++++ +I E    K               
Sbjct: 275 SVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQLNQDQLNT 334

Query: 294 ---RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
               + L++ +RDES     VR+V  PK+   D D  + ++   + +E    +N+ ++ +
Sbjct: 335 KKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLMNLVMMGL 394

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR
Sbjct: 395 DNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIR 454

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL   
Sbjct: 455 ESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDE 514

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            ++   I      +KE+ +     G  R T  E   A +A L Q   + EP+T+++S +G
Sbjct: 515 NEKKKLI------IKEMQADMKQYGDERRTLVE--EAGRAVLTQTTAD-EPVTLILSEKG 565

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           WIRS   H++DLS   FKEGD LK  L   T   +++L T G+ YTL A  +  GRG G 
Sbjct: 566 WIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVQPVIILDTLGRTYTLDAAEIPGGRGDGV 625

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  LI+L +                L+  S G  FI + +++++  + GK  + + + E
Sbjct: 626 PVSSLIELQNGAKPAAMLTGVPEQHYLLAGSGGYGFIAKLADMVSRNKNGKVLMTLDAGE 685

Query: 649 KMKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
            +   V V           V +     +LL F + ++  M +G+G++L    D
Sbjct: 686 TVLPPVPVYASSLINPDCKVVLADSGNRLLAFPLGELKVMPKGRGLQLTPLSD 738


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/670 (36%), Positives = 405/670 (60%), Gaps = 19/670 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KK+AR VG+V+GK 
Sbjct: 18  EKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKKAARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYTEA++   + L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPDDPKSFAAMRYTEAKLRPYSRLMLH 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT IP HN++E+  A +A
Sbjct: 138 ELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPPHNLREVASACIA 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+DN  +S+E+L+ YI  PD+PT   +V  +  I + Y  G G  R+RA++ VEE     
Sbjct: 198 LLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMRAKYTVEEGD--- 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             +V+T +P+Q   ++++E+IA+ +  K++P+++D+RDES  +  +R V+ P++  ++ D
Sbjct: 255 --VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRFVISPRSNRVNID 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            LM  +F  +D+E  + +NMNV+ +   P+V  L  IL EWL  R + + RR  +R+  +
Sbjct: 313 ELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQTVTRRLQWRLDKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL+GLL+AYLN+DE+I IIR ED+PK V++  F L++ Q +AIL  +LR L KLE
Sbjct: 373 EKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAVLMKAFKLSDEQAEAILETKLRHLAKLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502
           E +I+ E ++L  E++ +   L S ++    I       KE+ + + D G  RR+   E 
Sbjct: 433 EMKIRGEQEDLERERDDLQKTLGSKQRLKTLIK------KELKADAQDYGDDRRSPLVER 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             A +   + A++  EP T+VIS +GW+R+ K H +    L++K GD  +      T  +
Sbjct: 487 EAAQQMD-ETALVPSEPTTIVISEKGWVRAGKGHDLKPEELNYKAGDGYQHHALGRTNQQ 545

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
            + + ++G+ YTL A +  S R  GE +   + +    + V           L+ +  G 
Sbjct: 546 AVFIDSNGRTYTLVAHSFPSARSFGEPLTGKLKVKDGAEFVGVMAGKPQDLYLLATDAGY 605

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIP 679
            ++ +  +++   + GK  L V    K+   V V     D +  V E     +  +D++P
Sbjct: 606 GYVAKLEDMMTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGYCGVIKLDELP 665

Query: 680 EMSRGKGVRL 689
           ++ +GKGV++
Sbjct: 666 QLPKGKGVKM 675


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/710 (37%), Positives = 403/710 (56%), Gaps = 37/710 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE+      R+A  + YL YA+S +K RA+P++ DG KPV RRI+  M  MGL F    
Sbjct: 102 AEEDGALTLARYA-SQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRS 160

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+V+GK HPHGDQSVYD+LVR+AQ F  RYPL+  +GNFG+ DGDSAAA RYT
Sbjct: 161 VKSARIVGDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYT 220

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+T +++L+L+ VD  +VDF+  Y+    EPV  P+K P +L NG+SGIAVGMAT IP
Sbjct: 221 ETRLTPISQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIP 280

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A + L++NP+  + ++LE +  PDFP GG I+  ++ I   YR GRG  RV
Sbjct: 281 PHNLGEVAAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRV 340

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKR------- 294
           RARW  E++ RG W +V+ E+P       ++++I ++           + AK+       
Sbjct: 341 RARWHFEDLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAM 400

Query: 295 IPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + LL+++RDES +  DVR+V  PK   +D D  +  +   +D+E+  P+N+ +L +   P
Sbjct: 401 LSLLDNVRDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDGKP 460

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +   L  IL++W+A R  V+ RRS  R++ +  R+ +L+G  +  LNID +IAIIRN D 
Sbjct: 461 RQKGLLEILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIRNADD 520

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  ++  F LT+ Q D IL +RL+ L +L    I+ EL  L  E+  ++ +L S     
Sbjct: 521 PKADLIKEFGLTDRQADDILEIRLKQLARLAAIAIEKELAQLAKERAGLEKILGSDGALK 580

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
            Q A EI    + F+       RRT   E  +A      +     EP+TVVIS +G++R+
Sbjct: 581 RQTAKEIEAAAKSFADP-----RRTVVEEAEQA----AHEVQTADEPVTVVISRKGFLRA 631

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
              H  D S + FK GD L+  +   ++ +I  L   G+ YTL    L  GRG G  +  
Sbjct: 632 RTGHGHDCSLMSFKTGDGLEATIECRSSSQISFLDQAGRVYTLAVSALPGGRGDGSPLSA 691

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650
            +DL            D     ++V+S G   +++ S++    + G+ F+ +   E +  
Sbjct: 692 FVDLPKGAQPAGWISADPNAAAVIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLP 751

Query: 651 --KLVVKVT-GDH-VAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDG 695
             +L +K   G+  +A +  + +LL+F + ++    S GKG+   + + G
Sbjct: 752 PIELPLKAAQGEQLIACLSSSNRLLVFPLKEVRVTASGGKGMSFMTLETG 801


>gi|332527919|ref|ZP_08403953.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/696 (37%), Positives = 397/696 (57%), Gaps = 35/696 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF----GA 70
           E   A++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +    GA
Sbjct: 11  EPADALTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGA 70

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+V+G+ HPHGD + YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA R
Sbjct: 71  KPVKSARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMR 130

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+  +A L+L  +DE  VDF+  Y+    EP   P++ P +L NG SGIAVG+AT 
Sbjct: 131 YTEARLAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATE 190

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN++E+  AA+ LI +P ++ + L   + GPDFP GG I+ S   I  +Y  GRG  
Sbjct: 191 IPSHNLREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSL 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-------------- 296
           +VRARW +E++ RG W +VV E+P      R++E+I EL   K  P              
Sbjct: 251 KVRARWTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQ 310

Query: 297 ----LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
               +L+ +RDES++D  VR+V  PK+R++    L+ ++   + +E   P+N+ ++    
Sbjct: 311 TVLAVLDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADG 370

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P    L  +L+EW+  R++ + RR+  R+  +  R+ +L+G  +  LNIDE+I IIR  
Sbjct: 371 RPTQKSLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRES 430

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+P+  +++RF+L+E Q D IL+LRLR L +LE  +I+ EL  L   + +++ +L S   
Sbjct: 431 DEPRAALIARFNLSERQADDILDLRLRQLARLEAIKIEQELKELRETQARLEEILASPAV 490

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +      ++EI + +   G  R T  +  R   A ++         TVV+S +GW+
Sbjct: 491 LKRTL------IREIEADAKACGDERRTLIQEERRAVAEIRVVDEPV---TVVVSQKGWV 541

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R+LK H V+ S L FK GD+L       + D +L+    G+ Y++   +L  GRG G  I
Sbjct: 542 RALKGHEVERSTLGFKAGDALYATFACRSVDTLLVFGDRGRVYSVAVSSLPGGRGDGVPI 601

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             LI+L     I   +   +   LL+ +S G   + +  ++    R GK+FL + + E+ 
Sbjct: 602 TTLIELEAGTAIAHYWAGAADTTLLLANSGGFGLLAKAGDLHGRQRAGKSFLTLEAGERP 661

Query: 651 --KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
                V     + A +  + +LL++ +D++     G
Sbjct: 662 LEPWAVAAGQTNAACLAADGRLLVYPLDELKHQPNG 697


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 404/711 (56%), Gaps = 65/711 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+++M  MGL FG A         KSAR+VG+V
Sbjct: 38  YLEYALSVVKGRALPDVCDGLKPVQRRILYSMGRMGLGFGGANGNAGAKPVKSARVVGDV 97

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR+ ++  L
Sbjct: 98  LGRFHPHGDQSAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLAKITTL 157

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D+  VDF+  Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 158 LLDEIDQGTVDFQPNYDGSTEEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLREVADA 217

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI N ++S ++L   I GPDFP GG I+ S   I ++YR GRG  +VRARW +E++ 
Sbjct: 218 CVALIKNDKLSDDELFTLIPGPDFPGGGQIISSASDIADAYRSGRGSLKVRARWKIEDLA 277

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   R++E+I EL                  + A  + +L+ +RDE
Sbjct: 278 RGQWQLVVTELPPGVSSQRVLEEIEELTNPKVKAGKKALSQEQTQLKASILSVLDVVRDE 337

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S +D  VR+V  PK+R+++   L+ ++   + +ET  P+N+ ++ +   P    L  +L 
Sbjct: 338 SNKDALVRLVFEPKSRTVEQQELITALLAHTSLETSSPINLTMVGLDGKPVQKSLRQMLV 397

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R   + RRS  R+  +  R+ IL+G     LNIDE+IAIIRN D+PK  +++RF+
Sbjct: 398 EWVAFRASTIERRSRHRLGKVLDRIHILEGRQTVLLNIDEVIAIIRNSDEPKAALIARFN 457

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L S       +  EI   
Sbjct: 458 LSDRQAEDILEIRLRQLARLEAIKIEQELSELRTEQGKLEEILGSPAALRRLMVKEIEAD 517

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            ++F+ +     RRT      +A+K  + +  +  EP+TVV+S +GW+R+   H  + S 
Sbjct: 518 AKVFADA-----RRTLI----QAEKKAVAEVKVVDEPVTVVVSEKGWVRARTGHGHEAST 568

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L       T D +L+  ++G+ YT+P   L  GRG G+ +  L++L     I
Sbjct: 569 FAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVPVSALPGGRGDGQPVTTLLELEGGTQI 628

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
           +  F   S+ +LL+ SS G  FI     + +  + GK F+ V   E       V+G    
Sbjct: 629 LYYFAGPSSAQLLLSSSGGYGFIASVENMTSRQKAGKAFVGVGEGETPCAPSVVSGAQGK 688

Query: 659 -------------------------DHVAVVGENRKLLIFSIDQIPEMSRG 684
                                     HVA      ++L F I ++  M+ G
Sbjct: 689 VTFAGKEGSTAPGAAGAQATLLAPATHVACASTGGRILTFEITELKTMANG 739


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/710 (37%), Positives = 403/710 (56%), Gaps = 54/710 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG       A   KSARIVG+V
Sbjct: 34  YLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKPVKSARIVGDV 93

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGD SVYD+ VR+AQ F QRYPLI G GNFG+ DGD AAA RYTEAR+ ++  L
Sbjct: 94  LGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYTEARLAKITGL 153

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 154 LLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIPSHNLREVADA 213

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI +P++S   L   I GPD+P GG I+ S E I E+YR GRG  + RARW +E++ 
Sbjct: 214 CIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKCRARWKIEDLA 273

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304
           RG W +V+TE+P  V   R++E+I EL                  + A  + +L+ +RDE
Sbjct: 274 RGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATLLSVLDGVRDE 333

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VR+V  PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L 
Sbjct: 334 SSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRPTQKSLRQMLT 393

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+A R++ + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+PK  +++RF 
Sbjct: 394 EWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADEPKAALIARFH 453

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L S        A     +
Sbjct: 454 LSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPS------ALRRLMI 507

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KEI + +      R T  +   A+K  + +  +  EP+TVV+S +GW+R+ K  + + +A
Sbjct: 508 KEIEADAKTFADPRRTLIQ---AEKKAVLEVKVVDEPVTVVVSQKGWVRAQKGWASERAA 564

Query: 543 -------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                    FK GD+L       T D +L   ++G+ Y++    L   RG G+ +  L++
Sbjct: 565 NGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARGDGQPMTSLLE 624

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L     ++  F   +   LL+ SS G  F+     + +  + GK F+  ++ E +     
Sbjct: 625 LEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSP 684

Query: 656 VTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           V G           HVA      ++L F I Q+  M+  G+G+ L   +D
Sbjct: 685 VAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLED 734


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 289/757 (38%), Positives = 439/757 (57%), Gaps = 32/757 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ +S+   ++  YL YA+S I +RA+PD+RDG KPV RRI++ M EMGL   A ++KSA
Sbjct: 14  VRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNAKYRKSA 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPHGD +VYD+LVR+ QPF  RYPLI GQGNFG++DGDSAAA RYTEAR+
Sbjct: 74  GIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMRYTEARL 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+  VDF   Y++   EP V P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 134 APIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATNIPPHNL 193

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LIDNPE ++E+L+E + GPDFPTGGII+  RE I+ +Y  GRG   VRAR 
Sbjct: 194 GEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIIL-GREGILAAYATGRGRIVVRARA 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE GRG   I+VTE+PYQV K+ LIE+IAEL+ + R+  + D+RDES  D   ++   
Sbjct: 253 HIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMRIVIEL 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P  ++ ++F  + ++T F +NM  L  G +P+V+ L  +L+ +L HR++V+ RR+
Sbjct: 313 KRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQVIRRRT 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAIL 432
            F ++  +RR  +L+GL IA  ++DE+I+ IRN    ED  + +M +RF+LTE Q +AIL
Sbjct: 373 EFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLM-ARFNLTEIQANAIL 431

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L  LE  +I+ E   LLA   ++ +LL    +    +  E+ E+KE +      
Sbjct: 432 DMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRKELLELKERYGDP--- 488

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALH 544
             RRT   E S        + ++ +  + V +++RG++ RS   H          ++ + 
Sbjct: 489 --RRTQIQEAS---SEISDEDLVPRVDVIVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMA 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDI 602
            ++ DS++  + A T D +L  +  G+ + LP   L   GR   G  I   ++L   +++
Sbjct: 544 VRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLPIVNFLNLQPGEEV 603

Query: 603 VTAF-VYD-STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG- 658
            T   V D ST   L   ++         E  +N R  G   + + + +++  V   +G 
Sbjct: 604 TTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSLDAGDELAWVRPTSGS 663

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAG 716
           D V +V  + + + F  D +  M R  G  +    D G + VI  ++   EG   + S  
Sbjct: 664 DEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDA-VIAAEVVRPEGDLLLVSQY 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               R+  D     G RGG G +  K  PR+G   ++
Sbjct: 723 GYGKRTSLDEFRTQG-RGGSGVIAMKVTPRTGHVAAA 758


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/696 (36%), Positives = 410/696 (58%), Gaps = 36/696 (5%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL YA+S +K RA+P ++DG KPV RRI++AM +MGL       KSAR+VGE++GK 
Sbjct: 15  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVVGEILGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR++ +A+L+L  
Sbjct: 75  HPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPIADLLLSE 134

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           + +  VDF   Y+  + EPV+ P++ P +L NG SGIAVGMAT IPSHN+ EI +AA+AL
Sbjct: 135 IQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEITQAAIAL 194

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           + NP ++   L+ Y+  PDF  GG I+   + + + Y  G+G  RVRAR+ ++++ RG W
Sbjct: 195 LKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEIDKMARGQW 254

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306
            ++V+E+P     ++++ +I E    K                   + L+E +RD+S   
Sbjct: 255 RVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKVRDDSDGE 314

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR++  PK+  ++P   + ++   + +E    +N+ ++     P    L  IL+EWL 
Sbjct: 315 HPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKTILQEWLD 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R   + RR   R+ A++RR+ IL G LIA+L+IDE+I +IR  D+PK  +++ FSL+E 
Sbjct: 375 YRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKADLMANFSLSEI 434

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL +RLR L +LE  ++++EL+ L  E+  + +LL     +   I      +KE+ 
Sbjct: 435 QAEDILEIRLRQLARLEGIKLENELNELREEQSSLHTLLGDENAKKKHI------IKEMQ 488

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R T  E   A++ATL Q   + EP+T+++S +GWIR+   H VD++   FK
Sbjct: 489 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPVTLILSQKGWIRARSGHDVDIAQTVFK 545

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD L+  L A T   +++L   G++YT+   ++  GRG G  +  LID+  N  IV+  
Sbjct: 546 EGDGLQQILPARTVQPVIVLDDSGRSYTINPADIPKGRGDGVPLASLIDMPANAQIVSML 605

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK------MKLVVKVTGD- 659
             +     L+ +S G  FI +   + +  + GKT + + + E       + L   +  D 
Sbjct: 606 TGEPEDHYLLANSGGYGFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLSSLINPDC 665

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
            + +   + +LL F + ++  M++G+G+++ S ++G
Sbjct: 666 KIMLATAHNRLLAFPLGEMKIMAKGRGLQMISLQEG 701


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 398/705 (56%), Gaps = 59/705 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFKKSARIVGEV 82
           YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG       A   KSAR+VG+V
Sbjct: 29  YLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGTVGAKPVKSARVVGDV 88

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPH DQ+ YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR+ ++  L
Sbjct: 89  LGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLARITSL 148

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +DE  VDF   Y+    EP + P++ P  L NG SGIAVG+AT IPSHN++EI +A
Sbjct: 149 LLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATEIPSHNLREIADA 208

Query: 203 ALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            +ALI  N ++S E+L   + GPD+P G  I+     I ++YR GRG  +VRARW +E++
Sbjct: 209 CVALIKSNGKLSEEELFAIVPGPDYPGGAQIISGASDIADAYRTGRGSLKVRARWKIEDL 268

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W +VV E+P  V   +++E+I E+                  + A  + +L+ +RD
Sbjct: 269 ARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQTQLKAAMLSVLDVVRD 328

Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES++D  VR+V  PK   +  +  + ++   + +ET  P+N+ ++ +   P    L  +L
Sbjct: 329 ESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTMVGIDGKPTQKSLRQML 388

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            EW+A R   + +RS  R+  +  R+ IL+G  +  LNIDE+IAIIR  + PK  +++RF
Sbjct: 389 NEWIAFREITVEKRSRHRLNKVLERIHILEGRQLVLLNIDEVIAIIRAAEDPKAALIARF 448

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L S       +  EI  
Sbjct: 449 NLSERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILGSPATLRRLLIKEIEA 508

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F        RRT      +A+K  + +  +  EP+TV++S +GW+R+ K  + + +
Sbjct: 509 DAKTFEDP-----RRTLI----QAEKRAVAEVKVVDEPVTVIVSQKGWVRAQKGWASEKA 559

Query: 542 A--------LHFKEGDSLKIALHAHTTDRILLLSTDG----KAYTLPAGNLLSGRGHGEA 589
           A          FK GD+L  A    + D +L+  +      + YT+P  +L   RG G+ 
Sbjct: 560 AGNGGAAPEYSFKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYTVPVASLPGARGDGQP 619

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  LI+L+    +   F       +L+ ++ G  FI     +++  R GK F+ V   E+
Sbjct: 620 VTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQ 679

Query: 650 M---KLVVKVTG-------DHVAVVGENRKLLIFSIDQIPEMSRG 684
           +    LV   +G        HVA      ++L F I ++  + +G
Sbjct: 680 LCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 724


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/576 (42%), Positives = 366/576 (63%), Gaps = 16/576 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ L+  A  KKS R V
Sbjct: 15  MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138
           G+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYTE+++T 
Sbjct: 75  GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIAVGMAT +P HN+ E
Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y  G G  R RA +  
Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314
           E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +RDES     VRIVLF
Sbjct: 255 EDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +L EWL+ R + + R
Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ 
Sbjct: 370 RLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I        E+ + +   G 
Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD S + ++EGD L  A
Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMSYREGDRLLAA 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +   +T ++  L ++G+AY+     L + RG+GE +
Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPAARGNGEPL 579


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 276/750 (36%), Positives = 413/750 (55%), Gaps = 43/750 (5%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R+A E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE+
Sbjct: 19  RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL
Sbjct: 78  LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +A
Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           A+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++ 
Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304
           RG W ++VTE+P     ++++ +I E    K                   + L++ +RDE
Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317

Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL+
Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F 
Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L    ++   I      +
Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE+ +     G  R T  E   A +A L Q   + EPIT+++S +GWIRS   H++DLS 
Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548

Query: 543 LHFKEGDSLKIALHA-HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             FKEGD LK  L   H   R       G+ Y++ A  +  GRG G  +  LI+L +   
Sbjct: 549 TAFKEGDRLKQTLEGPHCFTRRHPRFIRGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+ SS G  FI +  +++   + GK  +   S E +   V V     
Sbjct: 609 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 668

Query: 661 -------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +A   +NR  L F I ++  M++GKG+++    + G S        E    I+
Sbjct: 669 INPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIE 726

Query: 714 SAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
           S GR     ++ L   L   KRG  G L+P
Sbjct: 727 SEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 284/752 (37%), Positives = 446/752 (59%), Gaps = 42/752 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+     + KSAR+VG+ +GK
Sbjct: 19  LKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA RYTEARM+++ + +L 
Sbjct: 79  FHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARMSKITQYMLA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN+ E+ E  +A
Sbjct: 139 DIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-G 264
            IDNPEI I++L+ YI GPDFPTG  I+ + E I+ +YR G+G FR RA+  VEE+ + G
Sbjct: 199 QIDNPEIEIKELMTYIKGPDFPTGASIMGT-EGIISAYRTGKGSFRTRAKAHVEEMEKSG 257

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES      ++    R ++P +
Sbjct: 258 KMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQV 317

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           L+  ++  + ME  F +N+  L  G+ P+V+ L  I+  ++ H+++V+ RR+ F +   +
Sbjct: 318 LLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAE 376

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
               IL+GL IA   IDE+I+IIR   +E   K  ++SRF L++ Q  AI+++RL+ L  
Sbjct: 377 AEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTG 436

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ +   +      + ++LNS +   N I  E++EVKE F        RRT   E
Sbjct: 437 LEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-----RRT---E 488

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSVDLSALH---FKEGDSLKI 553
           +S        + +I+ E + + +S+RG+I+ +     KS       +H    +E D ++ 
Sbjct: 489 ISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEK 548

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607
                T   IL  +T GK Y L A  +  +GR G G A+  L+ +N +++ +TA +    
Sbjct: 549 IFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRK 608

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665
           Y+    L + + KG        E  +  + G   + +S ++++ + V++T   +H+ +  
Sbjct: 609 YNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL-IDVRLTKPDEHIIIAT 667

Query: 666 ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWID-SAGRSY 719
           +N   + F    + +M R     KG+ L+  +D  +S DVI  +  E L+  +    +  
Sbjct: 668 KNGLCIRFLESDVRQMGRTAHGVKGISLEK-EDLVVSMDVIYEEEAEILSMTELGFSKRT 726

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + SE  + G    RGG G +  K   ++GK +
Sbjct: 727 SLSEYRVQG----RGGKGIIATKLNAKTGKLV 754


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 284/752 (37%), Positives = 445/752 (59%), Gaps = 42/752 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+     + KSAR+VG+ +GK
Sbjct: 19  LKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA RYTEARM ++ + +L 
Sbjct: 79  FHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARMAKITQYMLA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN+ E+ E  +A
Sbjct: 139 DIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-G 264
            IDNPEI I++L+ YI GPDFPTG  I+ + E I+ +YR G+G FR RA+  VEE+ + G
Sbjct: 199 QIDNPEIEIKELMNYIKGPDFPTGASIMGT-EGIISAYRTGKGSFRTRAKAHVEEMEKSG 257

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES      ++    R ++P +
Sbjct: 258 KMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQV 317

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           L+  ++  + ME  F +N+  L  G+ P+V+ L  I+  ++ H+++V+ RR+ F +   +
Sbjct: 318 LLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAE 376

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
               IL+GL IA   IDE+I+IIR   +E   K  ++SRF L++ Q  AI+++RL+ L  
Sbjct: 377 AEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTG 436

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ +   +      + ++LNS +   N I  E++EVKE F        RRT   E
Sbjct: 437 LEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-----RRT---E 488

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSVDLSALH---FKEGDSLKI 553
           +S        + +I+ E + + +S+RG+I+ +     KS       +H    +E D ++ 
Sbjct: 489 ISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEK 548

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607
                T   IL  +T GK Y L A  +  +GR G G A+  L+ +N +++ +TA +    
Sbjct: 549 IFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRK 608

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665
           Y+    L + + KG        E  +  + G   + +S ++++ + V++T   +H+ +  
Sbjct: 609 YNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL-IDVRLTKPDEHIIIAT 667

Query: 666 ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWID-SAGRSY 719
           +N   + F    + +M R     KG+ L+  +D  +S DVI  +  E L+  +    +  
Sbjct: 668 KNGLCIRFLESDVRQMGRTAHGVKGISLEK-EDLVVSMDVIYEEEAEILSMTELGFSKRT 726

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + SE  + G    RGG G +  K   ++GK +
Sbjct: 727 SLSEYRVQG----RGGKGIIATKLNAKTGKLV 754


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 416/719 (57%), Gaps = 39/719 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 152 GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 211

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 212 KRLGLNPDVKTVKSARVVGEVLGKYHPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 271

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 272 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 331

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 332 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 391

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------I 290
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L           +
Sbjct: 392 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 451

Query: 291 IAKR-------IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
            AK+       + ++  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 452 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 511

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 512 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 571

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 572 EVIRIIRGADDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 631

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +      G  R T  E ++   A++ + +I+ EP+T
Sbjct: 632 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIEEAKG--ASIAKQVID-EPVT 682

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 683 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 742

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           S RG G  +   +     QD    F Y    S   LL  S     F  + S++    R G
Sbjct: 743 SARGEGTHVSAFVQF---QDGDVPFDYICGASDTVLLFTSDAAMGFFCKMSDLAVRQRGG 799

Query: 639 KTFLKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K+F  +   + + + V   +TG  +A +  + +L++F+ D++  +S  GKG  + + +D
Sbjct: 800 KSFFILDGAKPLPVQVSTPLTG-WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 857


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/719 (35%), Positives = 414/719 (57%), Gaps = 39/719 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 26  GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 86  KRLGLNPDVKTVKSARVVGEVLGKYHPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 145

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 146 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 205

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 206 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 265

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------I 290
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L           +
Sbjct: 266 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 325

Query: 291 IAKR-------IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
            AK+       + ++  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 326 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 385

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 386 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 445

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 446 EVIRIIRGTDDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 505

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +      G  R T  E   A  A++ + +I+ EP+T
Sbjct: 506 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIE--EAKGASIAKQVID-EPVT 556

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 557 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 616

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKG 638
           S RG G  +   +     QD    F Y        LL  S     F  + S++    R G
Sbjct: 617 SARGEGTHVSAFVQF---QDGDVPFDYICGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGG 673

Query: 639 KTFLKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K+F  +   + + + V   +TG  +A +  + +L++F+ D++  +S  GKG  + + +D
Sbjct: 674 KSFFILDGAKPLPVQVSTPLTG-WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 731


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/715 (38%), Positives = 429/715 (60%), Gaps = 48/715 (6%)

Query: 5   NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++SN SN  +E+ +KA          YL Y++S I  RA+PD+RDG KPVHRRI+ +MSE
Sbjct: 36  DLSNESNVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+IDG
Sbjct: 87  MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM ++ E +L+ + +D +D+R  ++E   EPVV P+K PNLL NG +GI
Sbjct: 147 DEAAAMRYTEARMAKITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGGII   ++ I ++Y
Sbjct: 207 AVGMATNIPPHNLGEVVDGIIALIDNPEISIDELITYIKGPDFPTGGII-NGKQGIYDAY 265

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RV  R  VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RD
Sbjct: 266 RTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRD 325

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+  D +RIV+  K +  + +L++ S++  +D++  F + M  L +   P+V+ L  IL+
Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQILQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR   + +  +  +++
Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIA 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E 
Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEG 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
            ++KE      D G  R T    +RA+ +   + +I+ E + V ++ +G++        R
Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S K   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643
           I  +I+L+ ++ + T      ++    L  V+  G   +V++SE  +  N +K GK  ++
Sbjct: 616 IGNIINLDDDEKVSTIIKVREFEKNKNLFFVTRNG---VVKKSELTLFDNIKKAGKRAIR 672

Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
           ++ ++++  +   +G   D +    +N   + FS   +  M  G  GVR  + +D
Sbjct: 673 LNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSMGTGAAGVRGINLRD 727


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/686 (36%), Positives = 392/686 (57%), Gaps = 30/686 (4%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
           RYL YA+S +  RA+P   DG KPV RRI++AM  MGL       KSAR+VG+VIGK HP
Sbjct: 77  RYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVIGKYHP 136

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD SVYD++VR+AQ +  RYP++ GQGNFG+ DGD+AAA RYTEAR+T +AEL+L  +D
Sbjct: 137 HGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELLLAELD 196

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E  VD++  Y+  + EP + P++ P  L NG SGIAVGMAT IP+HN++E+  AA+ LI 
Sbjct: 197 EGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAAVNLIR 256

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP+   +++L+ I GPD+P G  I+ S E I  +YR GRG  RVRA+W +E + RG W +
Sbjct: 257 NPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLARGQWKL 316

Query: 269 VVTEIPYQVQKSRLIEKI-------AELIIAKRIPLLED---------------IRDESA 306
           V+TE+P  V  + ++ +I       A+    K++   E                +RDES 
Sbjct: 317 VITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGVRDESG 376

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++  VR+V+ P +     D L+  +   + +ET   +N+ +L +   P+   L  ++ EW
Sbjct: 377 KEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYSMIAEW 436

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
              R   + RR+  R+ A ++R+ IL+G     L+ID +I +IR  D PK  +++ F L+
Sbjct: 437 CRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKADLMAHFKLS 496

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL +RLR L +LE  +I  EL  L  E   ++ LL+S +     +A EI    +
Sbjct: 497 EIQAEDILEIRLRQLARLEGIKIGEELAKLREEAAGLNKLLDSEEALRACVAAEIEADAK 556

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT     ++   +  +   I  EP T+++S  GW+RS   H++D + L 
Sbjct: 557 KYGDD-----RRTLIEADAKVTMSDAKTVSIVDEPTTLIVSKHGWLRSRTGHNIDPTQLT 611

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           F+ GDSL   L   T D +++L   G+AY++ A ++  G+G G     ++D      +  
Sbjct: 612 FRSGDSLLACLPCRTVDSLIILDHLGRAYSISAADIPGGKGDGVPATSVVDFQDGGKLCL 671

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
           A    +  + LV +  G  F  + S+ ++  + GK FL +   E   + +    +  +A 
Sbjct: 672 ALSTSADKRYLVAADGGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAEGEIAC 731

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRL 689
           V ++ + L+F+I+++  +++G+G++L
Sbjct: 732 VTKDGRALVFNIEEVRLLAKGRGLKL 757


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 283/777 (36%), Positives = 448/777 (57%), Gaps = 54/777 (6%)

Query: 5   NISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           N++N  N  +E+ +KA          YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E
Sbjct: 35  NMTNEVNIYIEDEIKA---------SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNE 85

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     FKKSARIVGEV+GK HPHGD SVY+++VRLAQ F  RY L+ G GNFG++DG
Sbjct: 86  MGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDG 145

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM ++   +L  +D++ +DFR  ++E   EP V P+K PNLL NG++GI
Sbjct: 146 DEAAAMRYTEARMAKITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGI 205

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EIC+  +ALIDN EIS+++L+ YI GPDFPTGGII   ++ I E+Y
Sbjct: 206 AVGMATNIPPHNLSEICDGIVALIDNREISVDELINYIKGPDFPTGGII-NGKQGIYEAY 264

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  +V  +  +E    G   I+VTE+PYQV K+RLIEKIAEL+  K++  + D+RD
Sbjct: 265 RTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRD 324

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +RIV+  K +  + +L++ S++  +D++  F + M  L +   P+V+ L  IL+
Sbjct: 325 ESDREGIRIVIELK-KGEESELILNSLYKFTDLQNTFGIIMLAL-VNNAPRVLNLKQILE 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L HR  V+ RR  F +   + R  IL+G  IA  NIDE+I IIR   + ++ +  +++
Sbjct: 383 NYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLIA 442

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F  +E Q  AIL++RL+ L  LE  +I+ E   L+   E++ S+L    +++  I  E+
Sbjct: 443 SFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEV 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
            ++KE      D G +R T  + +R +     + +I+ E + V ++ +G+++        
Sbjct: 503 IKLKE------DFGDKRRTEIKEARVEIGI--EDLIKDEDVVVTLTEKGYVKRTSIDTYH 554

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S +   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643
           I  LI L+ ++ + T      ++    +  ++  G   +V++++  + AN  K G   L 
Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDKAIFFITKDG---VVKKTDLTLFANINKTGIRALT 671

Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGG 696
           +  E+++K     +G   D + +   N   + F  + +  M R     KG+ L+  KD  
Sbjct: 672 LRDEDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVMGRTAAGVKGITLRD-KDYV 730

Query: 697 ISDVICF--KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           ++ VI    KI E L+ +      Y +        +  RGG G +  K   ++GK +
Sbjct: 731 VAAVIINPEKISEELSVMTITEEGYGKRTALSEYKVQSRGGKGIINLKINEKTGKIV 787


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 283/739 (38%), Positives = 419/739 (56%), Gaps = 35/739 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARI 78
            SL+     RYL YALS I  RA+PD+RDG KPV RRI++AM ++  L   A  KKSA++
Sbjct: 31  ASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQADEKLSHEAKHKKSAKV 90

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG VIG+ HPHGD +VYD++VR+AQPF  R PL+ G GNFG++DGDS AAYRYTEAR+T 
Sbjct: 91  VGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLDGDSPAAYRYTEARLTA 150

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +    V FR  Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN++E
Sbjct: 151 AAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTGIAVGMATNIPPHNLRE 210

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +AL D+PE+++  LL+YI GPDFPTGG I+ S+  + E Y  GRG  RVR  + +
Sbjct: 211 LTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREIYEEGRGAIRVRGEYKL 270

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E   R S  +VVT +PY V K+ ++E+IAE+II +++P L D+RDES  DVR+VL  K +
Sbjct: 271 ETQKR-SKILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVRDESTTDVRVVLEIK-K 328

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLAHRREVLFR 374
             DP+++M  +F  + ++  F +N+  L    +    P  + L  +L+ +L  R EV  R
Sbjct: 329 DADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLKDMLRHFLDFRYEVTER 388

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R  F + A+ RR+ IL+G ++ +  +DE I IIR  D  +     ++ +F L + QVDAI
Sbjct: 389 RYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQKIMKKFGLDKEQVDAI 448

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L KLE   I+ EL +  ++ + I+++L S K+ W  +  E+ EV E+      
Sbjct: 449 LELRLYRLAKLEINIIREELADKRSQAKSIEAILRSEKKLWGVVKTELGEVAEL------ 502

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG  R T    + A+      A I  E   VV++  GW++  +    D ++   +EGD +
Sbjct: 503 LGDARRTKTGGAAAELEFDADAYIIDEDAHVVLTRDGWLKRQRELK-DPTSTRLREGDEV 561

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              L   T + +   +  G AY +   ++ +  G+G+ +Q L      + IV A  +D  
Sbjct: 562 MAVLAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAAMAFDPR 621

Query: 612 C----KLLVVSSKG-NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
                +LL VSS G       E      TR G+ F +    +++  VV    D + VV  
Sbjct: 622 AMPPDELLTVSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDDIVVVAT 681

Query: 667 NRKL-LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----KICEGLTWIDSA--GRS 718
            +   L     +I ++   GKGV +   K G    VI F    +  E L +++SA  GR+
Sbjct: 682 RKGYTLACRSGEINKLENPGKGVTV--IKTGEHDKVIGFISGGRRAEAL-YVESAKGGRT 738

Query: 719 YNRSENDLLGWLGKRGGVG 737
           +    + +   L  RGG G
Sbjct: 739 FEL--HAVAQRLTTRGGKG 755


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/615 (41%), Positives = 384/615 (62%), Gaps = 35/615 (5%)

Query: 5   NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++SN SN  +E+ +KA          YL Y++S I  RA+PD+RDG KPVHRRI+ +MSE
Sbjct: 36  DLSNESNVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+IDG
Sbjct: 87  MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +GI
Sbjct: 147 DEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGGII   ++ I ++Y
Sbjct: 207 AVGMATNIPPHNLGEVVDGIVALIDNPEISIDELITYIKGPDFPTGGII-NGKQGIYDAY 265

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RV  R  VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RD
Sbjct: 266 RTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRD 325

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+  D +RIV+  K +  + +L++ S++  +D++  F + M  L +   P+V+ L  +L+
Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQVLQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR   + +  +  +++
Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIA 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E 
Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEA 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
            ++KE      D G  R T    +RA+ +   + +I+ E + V ++ +G++        R
Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S K   + ++A +  E D +K    A T D +L+ +T GK +++    +     +  G+ 
Sbjct: 556 SQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKL 615

Query: 590 IQLLIDLNHNQDIVT 604
           I  +I+L+ ++ + T
Sbjct: 616 IGNIINLDTDEKVST 630


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/684 (38%), Positives = 394/684 (57%), Gaps = 37/684 (5%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S +  RAIP L DG KPV RRI++AM +MGL       KSAR+VGEVIGK HPHGD SV
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQ F  RYP++ GQGNFG++DGDSAAA RYTEA +T ++EL+L  +DE  VDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+    EPV  P++ P LL NG SGIAVGMAT IP HN++E+ +    L+  P+++ 
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           +++L+ I GPDFP GG I+ +   I E+Y  GRG  RVRARW VE++ RG W I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 275 YQVQKSRLIEKIAELIIAKR--------------------IPLLEDIRDES--AEDVRIV 312
             V  ++++ +I  L   +                     +  ++ +RDES  A  VRIV
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREV 371
           + P++R+ DP  LM  +   + +E+   +N+ VL + G+ P  MPL  IL++W+ +R   
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAP-CMPLTRILRQWVRYRVTT 439

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS FR+     R+ IL+G L   L+ID +I +IR  D PK  +++ F L+E Q + I
Sbjct: 440 VRRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKADLMTHFDLSEIQAEDI 499

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L +L   +++ E    LA+K++  + L++  Q  +++   I E  EI + +  
Sbjct: 500 LEIRLRQLARLAGIELERE----LADKQETAAYLSALLQDESRLRALIAE--EIQADAKK 553

Query: 492 LGRRRTTFCEVSRA-DKATLQQ--AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            G  R T  E   A    ++Q   A I  EP+TV++S +GW+R+   H +D + L FKEG
Sbjct: 554 FGDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQKGWLRTRSGHGLDTATLGFKEG 613

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L  A    + D ++LL   G+AY++    +  GRG G  +   +D      + +    
Sbjct: 614 DALLQAFEVRSVDTLVLLDHSGRAYSIAVAQIPGGRGDGIPVSSQVDFQPGGVLASVACG 673

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVG 665
                 LV  + G  F+     +    R GK FL +  +E+   +++VT    + + +  
Sbjct: 674 AGDSLWLVAGTGGYGFLTTLENMTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSS 733

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL 689
           + R LL F +  +  + +GKGV+L
Sbjct: 734 DGRGLL-FPLVDVKNLPKGKGVKL 756


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I+   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES  + +RIV+ 
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P++++ +++  + M+T F + +N+  +  VP+V+ L  ++  +L H+  V+ R
Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433
           R+ F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL+
Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++      
Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT   ++ R D       ++E+E + + I+N+G+I+ + + +          ++A+  
Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++ 
Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594

Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655
                D   +    ++ ++ KG       S +  N RK G   +K    +++   KLV K
Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683
              + V +V +    L F++DQ+ ++SR
Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/713 (38%), Positives = 425/713 (59%), Gaps = 48/713 (6%)

Query: 5   NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++SN +N  +E+ +KA          YL Y++S I  RA+PD+RDG KPVHRRI+ +MSE
Sbjct: 36  DLSNEANVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+IDG
Sbjct: 87  MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +GI
Sbjct: 147 DEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGGII   ++ I ++Y
Sbjct: 207 AVGMATNIPPHNLGEVVDGIVALIDNPEISIDELIGYIKGPDFPTGGII-NGKQGIYDAY 265

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  RV  R  +E    G   IVVTE+PYQV KSRLIEKIA+L+  K++  + D+RD
Sbjct: 266 KTGRGKLRVAGRVEIETSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRD 325

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+  D +RIV+  K +  + +L++ S++  +D++  F + M  L +   P+V+ L  +L+
Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQVLQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR   + +  +  ++ 
Sbjct: 384 KYLEHRFEVITRRTEFELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELID 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   EK+  +L+   + +  I  E 
Sbjct: 444 KFEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEA 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
            ++KE      D G  R T    +RA+ +   + +I+ E + V ++ +G++        R
Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S K   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643
           I  +I+L++++ + T      ++    L  V+  G   +V++SE  + +N  K GK  ++
Sbjct: 616 IGNIINLDNDEKVSTIIKVREFEKNRNLFFVTRNG---VVKKSELTLFSNIMKAGKRAIR 672

Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY 692
           ++ ++++  +   +G   D +     N   + FS   +  M +   GVR   Y
Sbjct: 673 LNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSMGTSAVGVRELHY 725


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I+   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES  + +RIV+ 
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P++++ +++  + M+T F + +N+  +  VP+V+ L  ++  +L H+  V+ R
Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433
           R+ F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL+
Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++      
Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT   ++ R D       ++E+E + + I+N+G+I+ + + +          ++A+  
Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++ 
Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594

Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655
                D   +    ++ ++ KG       S +  N RK G   +K    +++   KLV K
Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683
              + V +V +    L F++DQ+ ++SR
Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG I+   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES  + +RIV+ 
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P++++ +++  + M+T F + +N+  +  VP+V+ L  ++  +L H+  V+ R
Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433
           R+ F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL+
Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++      
Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT   ++ R D       ++E+E + + I+N+G+I+ + + +          ++A+  
Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++ 
Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594

Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655
                D   +    ++ ++ KG       S +  N RK G   +K    +++   KLV K
Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683
              + V +V +    L F++DQ+ ++SR
Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/626 (39%), Positives = 385/626 (61%), Gaps = 38/626 (6%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K + +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ +   +KKSAR
Sbjct: 12  KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD +VY ++VRLAQ F  RY LI+G GN+G+IDGD AAA RYTEARM 
Sbjct: 72  IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++  +L+ +D++ +DFR  ++E   EP V P+K PNLL NG +GIAVGMAT+IP HN  
Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+  +A+I+NP+I+I++L+ YI GPDFPTGGII   R  I+E+Y+ GRG  RV  +  
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGII-NGRSGIIEAYKTGRGKVRVAGKIK 250

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
           +EE   G   I+V E+PYQV K+RLIE+IAEL+  K++  + D+RDES  D +R+V+  K
Sbjct: 251 IEESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELK 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + +L++ S++  +D++  F +    L +   P+V+ L  IL+ +L HR  V+ RR+
Sbjct: 311 -RGEESELILNSLYKYTDLQNTFGIIFLAL-VDNAPRVLNLKEILQNYLKHRYSVVTRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NEDKPKPVMVSRFSLTENQVDAI 431
            F +   ++R  IL+G  IA  NIDE+I IIR     NE K K  +++ F+ +E Q  AI
Sbjct: 369 KFELDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDK--LMAGFAFSEVQAKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E   L+   E++ ++L+   + +  I  E++++KE FS    
Sbjct: 427 LDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIKEDFSDP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RRT   E+  A      + +I+ E + V ++++G++        R+ K   + +SA 
Sbjct: 485 ---RRT---EIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVSAT 538

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           +  E D +K    A   D +L+ +T G     K Y +P     S +  G  I  +I L  
Sbjct: 539 NILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEA---SKQARGRLISNIIKLQE 595

Query: 599 NQ---DIVTAFVYDSTCKLLVVSSKG 621
           ++    I+    ++    +  V+ KG
Sbjct: 596 DEMVSTIIKVREFEKDKDIFFVTRKG 621


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/687 (38%), Positives = 417/687 (60%), Gaps = 33/687 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L+++I  PDFPTGG I+   E +  +Y  GRG  ++RA 
Sbjct: 187 LGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVKLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K++  + D+RDES  + +RIV+ 
Sbjct: 246 ARIEE-SKGRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P++++ +++  + M+T F + +N+  +  VP+V+ L  ++  +L H+  V+ R
Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433
           R+ F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL+
Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMQRFGFSEIQAQAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L+ LE+ ++++E D L A  E++  +LN+       I  E+ E+K  +S      
Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDD---- 478

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT   ++ R D       ++E+E + + I+N+G+I+ + + +          ++A+  
Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++ + 
Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVT 594

Query: 604 TAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVKV 656
                D      + ++  +K         ++  N RK G   +K    +++   KLV K 
Sbjct: 595 QVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKTGIIAIKFDEGDELIDVKLVEK- 653

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             ++V +V +    L F++DQ+ ++SR
Sbjct: 654 -NENVIIVTKKGMSLQFNVDQLRDLSR 679


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 282/755 (37%), Positives = 435/755 (57%), Gaps = 46/755 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +RA+  +E  G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIA+L+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 ERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR PQ++ L   L  +L H++EV+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII IIR  D  K  M    SRF+L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L + +          +  ++  E D + 
Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLEDDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  I   I+L+ ++ I T      
Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELDQDEVISTMIAVKD 607

Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            DS    LV V+ KG       S      R GK  +K   ++++  V    GD   ++G 
Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGDKHILIGT 667

Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716
            +  LI F    +  MSR     KG+RL   +DG   +VI   + +      +  +   G
Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNKDEILVVTEKG 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                S  D    L  RGG+G    K   R+G+ +
Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/615 (41%), Positives = 384/615 (62%), Gaps = 27/615 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           NS+    + V  VS+   ++  YL YA+S I  RAIPD+RDG KPVHRR ++AM EMG  
Sbjct: 6   NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNY 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKKSARIVGEV+GK HPHGD S+YD+LV++AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 66  HDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  V+E +L+ +D++ VDF   ++E   EP+V P+K PNLL NG+ GIAVGM
Sbjct: 126 AMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P HN+ E+C A  A+ID+PEIS   L+EY+ GPDFPTGG+I+  R  I  +Y  GR
Sbjct: 186 ATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVIL-GRSGIASAYTTGR 244

Query: 248 GGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           G  R+R    +E+  G     I+++EIPYQV K+RLIE+IA+L+  K+I  + DIRDES 
Sbjct: 245 GRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESD 304

Query: 307 ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +D +R+V+  K +S+ P +++  ++  + +E+ F + +N+  +   P+V+ L  I++E+L
Sbjct: 305 KDGIRVVIELK-KSIVPMVVLNQLYKHTPLESTFGV-INLAIVDNQPKVLTLKEIIQEFL 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            HR+ V++RR+ F ++  + R+ IL+GLL+A  NID +IA IR     +     ++  F 
Sbjct: 363 KHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIENFG 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DAIL ++LR L  LE+ +I  E D LL E E++  +++     + +I  E  E+
Sbjct: 423 LDEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVERLKLIISDEGHIFAEIKKETLEI 482

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
            E +S      RR     +VS  DK  L    IE + + V +++  +I+S+   +     
Sbjct: 483 SEKYSDE----RRTKISHDVSDLDKEDL----IENKQVLVSLTSHNYIKSMPLDTYKGQH 534

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
                +  +  K+ D +K    A T D +L  ++ G+ Y L   ++   + +  G+AI  
Sbjct: 535 RGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYDIPEATRQSRGKAIVN 594

Query: 593 LIDLNHNQDIVTAFV 607
           L++L  +++ VTA +
Sbjct: 595 LLELG-DEEKVTAVI 608


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 263/711 (36%), Positives = 417/711 (58%), Gaps = 33/711 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   +++ YL Y++S I  RA+PD+RDG KPVHRRI+ AMSEMG+     FKKS
Sbjct: 3   NINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY+++VR+AQ F  RY LI G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ +D+R  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+N EI+ E+L+EY+ GPDFPTGGII +  + I E+Y  GRG  RVR +
Sbjct: 183 LGELLDGVLALIENKEITPEELMEYVTGPDFPTGGII-DGTKGIYEAYTTGRGRVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVL 313
             +EE+  G   I++TEIP+QV K+RLIEKIAEL+  K+I  + D+RDES+  E +RIV+
Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  +P++++  I+  ++++  F + +  L +  +P+V+ L  IL  ++ HR +V+ 
Sbjct: 302 ELK-RDEEPEIVLNKIYKYTELQNTFGIILLAL-VDNMPKVLNLKEILSHYINHRFDVIT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  IL+G  +A  NID II IIR     +  +  ++ ++S ++ Q  +
Sbjct: 360 RRTKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEKYSFSDIQARS 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++++E   L+   +++  +L++ ++ ++ I  +  E+KE +S   
Sbjct: 420 ILDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYDIIKEDCEELKEKYSDE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
                R T  E  R D     + +I+ E + V ++N+G+++ +        K     +S 
Sbjct: 479 -----RRTQIEEERLDINI--EDLIKDEKVIVTLTNKGYVKRMNLDKYKAQKRGGKGVST 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
            +  EGD L+    A   D +++ +  GK Y L    +   S +  G+ I  LI+L  N+
Sbjct: 532 QNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIANLINLQENE 591

Query: 601 ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VK 655
               I+    +  T  LL V+ +G       SE     R G   +K+   + +  V  V+
Sbjct: 592 KVKSIIKTREFSDTQDLLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLKDGDDLIFVGLVE 651

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDVICFK 704
              D V +  +N   + F  +    M R   GVR +   KD  +   +  K
Sbjct: 652 SPNDQVFIATKNGYSIKFPHENARNMGRATIGVRGINLRKDDDVVSAVIIK 702


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/702 (38%), Positives = 412/702 (58%), Gaps = 57/702 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++E ++ YA+S I  RA+PD+RDG KPVHRRI++AM E+G+     +KKSARIVGEV+GK
Sbjct: 18  MKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDKPYKKSARIVGEVLGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQ F  RY L++G GNFG+IDGDSAAA RYTE++M++++  +++
Sbjct: 78  YHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMRYTESKMSKISMELVR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF D Y+  + EP V PS+FPNLL NGTSGIAVGMAT+IP H + E+ +  LA
Sbjct: 138 DLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATNIPPHQLGEVIDGVLA 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+EYI GPDFPTGG I+  R  I ++Y  GRG   VRA+  + E  +G 
Sbjct: 198 LAKNPDISIPELMEYIPGPDFPTGGEIL-GRSGIRKAYSTGRGSITVRAKTEIVE-NKGK 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PYQV K+RLIEKIAEL+  K+I  + ++RD S  +   ++    R  +P+++
Sbjct: 256 QSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMNIVIDVRRDANPNVI 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + ++T F +NM  L  GR P+V+ L   L+++LAH+ EV+ RR+ F +   + 
Sbjct: 316 LNNLFKQTALQTSFGINMLALVNGR-PEVLNLKQTLEQYLAHQVEVIRRRTQFDLNKAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR  D  +     ++ RF L+ +Q  AIL++RL+ L  L
Sbjct: 375 RAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFELSYDQAQAILDMRLQRLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +++ E  ++LA   ++ ++L S ++  + I  EI  +KE F+       RRT    +
Sbjct: 435 ERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAIKEKFNDE-----RRTV---I 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIA 554
           S +++    + +I ++ I + I++ G+I+ L        K     +  +   + D ++  
Sbjct: 487 SASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQKRGGKGVQGMGTNDDDFVQHL 546

Query: 555 LHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHN 599
              +T   +L+ +  GKAY L               PA NLL     GE I  +I +   
Sbjct: 547 FTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAINLLP-FDPGETISTVIPIE-- 603

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKVTG 658
                   +D    L  V+  G A   + S   AN RKG  F + +   + +  V    G
Sbjct: 604 -------CFDDDSYLFFVTEHGIAKRTKLSA-FANIRKGGLFAINLREGDSLHGVRLTDG 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
           +   ++G  + + I    + PE      VRL     GG+  +
Sbjct: 656 NREVMIGTKQGMAI----RFPETD----VRLMGRTAGGVKGI 689


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 278/763 (36%), Positives = 436/763 (57%), Gaps = 40/763 (5%)

Query: 15  ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           E +K   +  ++EE     YL YA+S I  RA+PD+RDG KPVHRRI+++M+EMGL    
Sbjct: 2   EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AFKK  RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++  QGNFG++DGD  AA R
Sbjct: 62  AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M +VAE +L+ + ++ VD+   Y++   EP+V P  FP LL NG SGIAVGMAT+
Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+C A +A I++  ISI+ L++YI GPDFPTGGII   R  I +++R G+G  
Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIF-GRRGIKQAFRTGKGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
            VR+++ +E    G   I+VTEIPY V K+ LI KIA+L+  KRI  + D+RDES  D +
Sbjct: 241 TVRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGM 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R   P +++  +F  + ++  F +  N+  +  +P+ + L  ++  ++ HR 
Sbjct: 301 RIVIELK-RGTVPKVVLNQLFSHTALQQNFNVT-NLALVDGMPKQLNLKELVHYFVRHRV 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + ++  + R  IL+GL IA  NIDE++ II++    ++ +  ++ RF L+E 
Sbjct: 359 EVVTRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMERFKLSER 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I+ EL  +LA    +  LL+S ++    +  E  E+ + +
Sbjct: 419 QSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKDLLSSEQKILGVVRDETEEIAQKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                 G  R T       ++  ++  +I+KE + V++SN+G+I+ +   S         
Sbjct: 479 ------GDDRKTEIVADEVEEINIED-LIQKEDMVVLVSNKGFIKRVPVSSYRNQGRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
             S+      D +K    A T D IL ++ +GKAY +    +  G     G  I+ L+++
Sbjct: 532 GSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPEGSRASRGTHIKALLEI 591

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + N+DI T      +     L + +++G    V+ S+      +G   +K+ + + +   
Sbjct: 592 SANEDITTIVSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTRGIIAIKLDNGDTLITA 651

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEG 708
           V   GD  + +V  N   L F  DQ+  M R      G+RLQS  D  ++ ++  +  E 
Sbjct: 652 VLTRGDSEIVIVSRNGNALRFHEDQVRAMGRASRGVTGIRLQS--DDELAGILRVEDNEK 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  +   G    R E D     G RG  G +  K   RSG+ +
Sbjct: 710 MLLLSENGLG-KRVEYDHFSLHG-RGTRGQIAYKTSERSGEIV 750


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/629 (39%), Positives = 397/629 (63%), Gaps = 31/629 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN + +    +  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M+E+ L    
Sbjct: 3   MEENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 63  PYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ +D++ VDF   ++E   EP V P++FPNLL NG++GIAVGMATS
Sbjct: 123 YTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATS 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A + LIDNP+  +++L++YI GPDFPTG II+  ++SI E+YR GRG  
Sbjct: 183 IPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIM-GKDSIAEAYRTGRGKV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   IVVTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 242 KVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGM 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R ++ ++++ +++  S +E  F + M  L  G VP+++ L  IL  ++ H++
Sbjct: 302 RIVIELK-RDVNANIVLNNLYKHSQLEDTFSIIMLSLVNG-VPRILNLKQILHYYVEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL IA   IDE+I++IR   N    K  ++ +F L+E 
Sbjct: 360 DVVTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKFKLSEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  ++++E + L+ + E ++S+L   +     I  EI E+K+ +
Sbjct: 420 QAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILEIKKKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S +     RRT   E+  A+     + +I+ E IT+ +++ G+I+ L   +         
Sbjct: 480 SDA-----RRT---EIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGR 531

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D +K  +   T +R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 532 GISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQL 591

Query: 597 NHNQDIVTAFVYDSTCK----LLVVSSKG 621
             N+ I T    D        LL+ + KG
Sbjct: 592 GPNEKIATLIEVDGRADDDSYLLLATKKG 620


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 397/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F+LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/302 (70%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+K A+IVGE
Sbjct: 1   LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE++MT V+E
Sbjct: 61  VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPSHN  E+C+
Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVRA+W  E++
Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-RSL 320
           GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R + + +N  S+
Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRCLSWCRNLGSV 300

Query: 321 DP 322
           DP
Sbjct: 301 DP 302


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 262/691 (37%), Positives = 413/691 (59%), Gaps = 30/691 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +K V +   + + +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+     
Sbjct: 3   LNKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 63  FKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF   Y+ E++EP V P++FPNL+ NG  GIAVGMAT+I
Sbjct: 123 TEARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E  +A  A++D+P+I++ +L++ YI GPDFPTGGII+  R  I ++Y  GRG  
Sbjct: 183 PPHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIIL-GRSGIRQAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
             R+++ VEE+G G   IVVTEIPYQV K+ LI KIA+L+  K++  +  + DES  D +
Sbjct: 242 ITRSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGI 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  + + +  +++M  +F L+ ++T F +NM  L  G  P+ M +  +L+ ++ H+ 
Sbjct: 302 RIVIELR-KDVQVEVVMNQLFRLTSLQTSFGVNMLALVNG-APKQMGIKEMLQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ F ++  + R  IL+GL IA  +IDEII +IR   N+ + +  ++ RF LTE 
Sbjct: 360 DVVVRRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   LL     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E+S AD +   + +I  E + + ++  G+I+ +   +         
Sbjct: 480 GDP-----RRT---EISEADYSMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDL 596
            +  +   E D +++     T D ++L +  GK Y +    + S GR   G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +      +   +   LL V+  G       SE  +  + GK  + +  ++++  V
Sbjct: 592 DKEEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGV 651

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            + TG D + + G N K + F  D I  M R
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGIRAMGR 682


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/627 (40%), Positives = 380/627 (60%), Gaps = 31/627 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     FKKS
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTEA+
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A+IDNPEI  + LL Y+ GPDFPTGGII   ++ I  +Y  G+GG  VRAR
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   ++F 
Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  +F ++ ++T F +N   L  G+ PQ + L  I++ +++HR+EV+ RR
Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGK-PQTLTLKEIIQHFISHRKEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NIDE+IAII   R  D  +  ++ RF L+E Q  AIL
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+      + + 
Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLEL------AKEY 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------KSHSVDLSALHF 545
           G  R T      A+   ++  +I+KE + V++S  G I+ +       +           
Sbjct: 479 GDERRTEIVAEEAEDLDIED-LIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537

Query: 546 KEGDSLKIALH-AHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599
             GD +   L  A T D IL LS +GKAY L     P G+ +S    G++I+ L+ L+ +
Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS---QGKSIRSLVQLSPD 594

Query: 600 QD---IVTAFVYDSTCKLLVVSSKGNA 623
           +    +V+   ++   ++ ++++KG A
Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLA 621


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 277/777 (35%), Positives = 453/777 (58%), Gaps = 62/777 (7%)

Query: 13  VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +E+N   ++LR     +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL + 
Sbjct: 1   MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGDSAAA 
Sbjct: 61  KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 121 RYTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG 
Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGS 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +R +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES  + 
Sbjct: 240 VIMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L  +L  +L H+
Sbjct: 300 IRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           +EV+ RR+ F ++    R  IL+GL IA  NID II++IR     ++ K  ++ +F LTE
Sbjct: 358 KEVVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE 
Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           F       +RR+   E  + D+    + +IEKE I + +S+  +I+ L + +        
Sbjct: 478 FGD-----KRRSIIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLID 595
             ++ +   + D++   L   T D IL  +  GK YTL     N +S +  G  I  L++
Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590

Query: 596 LNH----NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEE 648
           +      N  I  + + +    L+  +  G   I+++S++    +  +KGK  LK+  ++
Sbjct: 591 IEKEEKVNSIIAISDLQEEGTNLIFSTKYG---IIKKSKLGDYASILKKGKIALKLDEDD 647

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM---SRG-KGVRLQSYKDGGISDVICF 703
            +  V ++T D  + +V  N + +  + +++  M   SRG KG+ L         D +  
Sbjct: 648 SLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSP------DDYVV- 700

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKFLS 752
               G+  +D + +    +EN  +G + K        RGG G  V K   ++GK ++
Sbjct: 701 ----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 436/755 (57%), Gaps = 46/755 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +RA+  +E  G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR PQ++ L   L  +L H++EV+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L + +          +  ++  + D + 
Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  I  +I+L+ ++ I T      
Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607

Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            DS    LV V+ KG       S      R GK  +K   ++++  V    G+   ++G 
Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVCLTDGEKHILIGT 667

Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716
            +  LI F    +  MSR     KG+RL   +DG   +VI   + +      +  +   G
Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                S  D    L  RGG+G    K   R+G+ +
Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 397/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F+LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 275/782 (35%), Positives = 449/782 (57%), Gaps = 72/782 (9%)

Query: 13  VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +E+N   ++LR     +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL + 
Sbjct: 1   MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGD AAA 
Sbjct: 61  KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 121 RYTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG 
Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGS 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +R +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES  + 
Sbjct: 240 VIMRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L  +L  +L H+
Sbjct: 300 IRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           +EV+ RR+ F ++    R  IL+GL IA  NID II++IR     ++ K  ++ +F LTE
Sbjct: 358 KEVVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE 
Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           F       +RR+   E  + D+    + +IEKE I + +S+  +I+ L + +        
Sbjct: 478 FGD-----KRRSVIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG-------- 587
             ++ +   + D++   L   T D IL  +  GK YTL     N +S +  G        
Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590

Query: 588 ----EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E +  +I ++  Q+  T+ ++ +   ++  S  G+   +         +KGK  LK
Sbjct: 591 IEKEEKVNSIIAISDLQEEGTSLIFSTKYGIIKKSKLGDYASI--------LKKGKIALK 642

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM---SRG-KGVRLQSYKDGGIS 698
           +  ++ +  V ++T D  + +V  N + +  + +++  M   SRG KG+ L         
Sbjct: 643 LDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSP------D 696

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKF 750
           D +      G+  +D + +    +EN  +G + K        RGG G  V K   ++GK 
Sbjct: 697 DYVV-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKI 750

Query: 751 LS 752
           ++
Sbjct: 751 VA 752


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/682 (37%), Positives = 397/682 (58%), Gaps = 45/682 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E G+    A+KKSARIVG+
Sbjct: 13  LERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSARIVGD 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD +VYDS VR+AQ F  RYPL+ G GNFG+IDGDSAAA RYTE RM ++  
Sbjct: 73  VLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYTEMRMAKITL 132

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +D+D VDF   Y+   +EP+V PS+ PNLL NG+ GIAVGMAT++P HN+ E+  
Sbjct: 133 EMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVPPHNLAEVVN 192

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              A+IDNPEI+I++L++YI GPDFPT  II +  + I ++YR GRG   VRAR  +EE+
Sbjct: 193 GLCAMIDNPEITIDELMKYIKGPDFPTAAII-QGHKGIEDTYRTGRGSITVRARVDIEEM 251

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            RG   I+VTE+PYQV K+RL+E IA+L   K I  +  +RDES      ++      ++
Sbjct: 252 ERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIVIELRSDVN 311

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++ +++  + M+  F   M  L  G  P+++ L  IL  +L H+ EV+ RRS + ++
Sbjct: 312 PQIMLNNLYKHTQMQVNFGSIMLALVDGH-PRILNLKQILYYYLKHQEEVITRRSRYELE 370

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + +  IL+GLLIA  +IDE+I  I   R ++  K  ++S+F L+E Q  AIL++RLR 
Sbjct: 371 KAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISKFGLSEKQAVAILDMRLRR 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I+++  ++      +  LL+S ++    +  E+ + K  F      G +R T
Sbjct: 431 LTGLERDKIEADYKDVQETIAYLRDLLSSREKIMGVVKAELTDEKNNF------GDKRRT 484

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDS 550
               +  D       +I  +P+T+ ++ + +I+ + S  +         +S L  K+GD 
Sbjct: 485 EIAAALGDMDVTD--LIPDKPMTITLTKQNYIKRIDSSDLRTQKKGGRGVSGLKMKDGDY 542

Query: 551 LKIALHAHTTDRILLLSTDGK-----AYTLPAG----------NLLSGRGHGEAIQLLID 595
           ++  L   T DRIL  +  GK     AY +P            N ++  G  E +  L+D
Sbjct: 543 VRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARGSAMINFITSLGADEHVTELLD 602

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L+ ++        + T  LL+V+  G        E     + G   +++  E+++  V+ 
Sbjct: 603 LDISE--------EGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDRLVAVLP 654

Query: 656 VTGDHVAVVGENRKLLI-FSID 676
           V G+   ++G  + + I FSID
Sbjct: 655 VKGNEEIIMGTRKGMAIRFSID 676


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/627 (40%), Positives = 380/627 (60%), Gaps = 31/627 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     FKKS
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTEA+
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A+IDNPEI  + LL Y+ GPDFPTGGII   ++ I  +Y  G+GG  VRAR
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   ++F 
Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  +F ++ ++T F +N   L  G+ PQ + L  I++ +++HR+EV+ RR
Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGK-PQTLTLKEIIQHFISHRKEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NIDE+IAII   R  D  +  ++ RF L+E Q  AIL
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+ + +      
Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGY------ 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------KSHSVDLSALHF 545
           G  R T      A+   ++  +I+KE + V++S  G I+ +       +           
Sbjct: 479 GDERRTEIVAEEAEDLDIED-LIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537

Query: 546 KEGDSLKIALH-AHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599
             GD +   L  A T D IL LS +GKAY L     P G+ +S    G++I+ L+ L+ +
Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS---QGKSIRSLVQLSPD 594

Query: 600 QD---IVTAFVYDSTCKLLVVSSKGNA 623
           +    +V+   ++   ++ ++++KG A
Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLA 621


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 437/755 (57%), Gaps = 46/755 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +RA+  +E  G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR PQ++ L   L  +L H++EV+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L + +          +  ++  + D + 
Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D++L  +  G+ Y L    +  LS +  G  I  +I+L+ ++ I T      
Sbjct: 548 QLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607

Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            DS    LV V+ KG       S      R GK  +K   ++++  V    G+   ++G 
Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667

Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716
            +  LI F    +  MSR     KG+RL   +DG   +VI   + +      +  +   G
Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                S  D    L  RGG+G    K   R+G+ +
Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 259/697 (37%), Positives = 416/697 (59%), Gaps = 30/697 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  + ++  +E  +L YA+S I  RA+PD+RDG KPVHRRI+ AM ++G+     +KKSA
Sbjct: 9   VVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGEV+GK HPHGD ++YD++VR+AQ F  RYPL+ G GNFG++DGDSAAA RYTE RM
Sbjct: 69  RVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L+ +D++ +D++  ++E   EPVV PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 129 AKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +A+I+NPEI+ E L+ YI GPDFPTGGII+  R  I ++Y  GRG  ++RA+ 
Sbjct: 189 DEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIIL-GRNGIKDAYSTGRGKLKIRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I+VTEIPYQV K++LIE IA L+  K+I  + D+RDES  D   V+   
Sbjct: 248 EIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVVIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++L+  ++  + +E  F + +  L  G  P+V+ L  IL  +L  ++EV+ RR+
Sbjct: 308 KRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGE-PKVLSLREILDHYLEFQKEVIIRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  N+D +I +IR     K     +++ FSL++ Q  AIL+
Sbjct: 367 KYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E   LL + +  + +L   +   N I  EI+E+KE +S S    
Sbjct: 427 MRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDS---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT     ++ D+   ++ +I  E + + ++++G++        R+ K     +S +  
Sbjct: 483 -RRTLIT--NKTDELD-EEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISGMTT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K  D ++      T + IL  +  GK Y L    +   S +  G AI  L+ ++ ++ I 
Sbjct: 539 KNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDEHI- 597

Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           TA +    +     L  V+ +G A  V  SE+ A  + G   + ++ ++++  V    G 
Sbjct: 598 TAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTDGK 657

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG-KGVRLQSYKD 694
              ++G  + L I FS +++  M R  +GV+  S KD
Sbjct: 658 QEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKD 694


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%)

Query: 13  VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +EEN K + +  A  +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L    
Sbjct: 1   MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA R
Sbjct: 61  PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATS
Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  
Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +VR+R  +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  + +
Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ 
Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE 
Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEI 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +
Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   E+  A+     + +I  E I + +++ G+I+ L S +         
Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +SAL  +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L
Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621
           + ++ I T    D   +   LL+ + KG
Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 436/755 (57%), Gaps = 46/755 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +RA+  +E  G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR PQ++ L   L  +L H++EV+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L + +          +  ++  + D + 
Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  I  +I+L+ ++ I T      
Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607

Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            DS    LV V+ KG       S      R GK  +K   ++++  V    G+   ++G 
Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667

Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716
            +  LI F    +  MSR     KG+RL   +DG   +VI   + +      +  +   G
Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                S  D    L  RGG+G    K   R+G+ +
Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 296/750 (39%), Positives = 433/750 (57%), Gaps = 40/750 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ Y+ YA+S I  RAIPD+RDG KPVHRR++ AMSEMG  +   +KKSARIV
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G++IGK HPHGD + YD++VRLAQ F  RYPLI GQGNFG+ID D  AA RYTE RM ++
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E IL  +++D VDF   Y+E   EP + PS+ P LL NGT+GIAVG+AT+IP HNV E+
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI NPE+++E+++++I GPDFPT G I   RE I+ +YR GRG  R+RA+  +E
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFI-NGREGIISAYRTGRGIIRLRAKVVIE 250

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           +  R     IVVTEIPYQV K+ LIEKI+EL+  K+I  + D+RDES  E +RIV+  K 
Sbjct: 251 KNERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + ++++  ++  + ME+ F + M  +  G+ P V  L  ILK ++  R+ V+ RR++
Sbjct: 310 RDENSNVILNQLYKHTQMESTFGIIMLAIENGQ-PHVFNLIEILKSFIEFRKVVIVRRTT 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
           F +     R  IL+GL+IA  NIDE++A+I+    P+     + SRFSLT+ Q  AIL++
Sbjct: 369 FEVNKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSRFSLTDIQARAILDM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE+ +IK E D LL E E++  +L+  ++    I   I E++EI  +  D   
Sbjct: 429 RLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVI---ISEMEEIIDRYGD--E 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
           RRT   E+  + +    + MI +E + V  S  G+I        R+ +        +  K
Sbjct: 484 RRT---EIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVGMMTK 540

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVT 604
           E D ++    A T D +L+ +  G+ Y L    +  +GR   G+ I  LI++  ++ +  
Sbjct: 541 EEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIGPDERVAA 600

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLV-VKVTGDHV 661
                S  +   V     A IV+++++ A  N R G   + +S +E  +LV VK+TG   
Sbjct: 601 VLPVRSFEEGQAVIMATRAGIVKKTDLTAYSNPRSG-GIIALSIDEGDELVDVKLTGGDQ 659

Query: 662 AVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGR 717
            V    R  K + F  D I  M R  +GVR  S        VI   I  EG   +  + +
Sbjct: 660 DVFLATRKGKAIRFKEDDIRTMGRTARGVRGISMDSD--DAVIGMDIPREGNAIVTVSEK 717

Query: 718 SYNRSENDLLGWLGKRGGVG----SLVPKG 743
              +        L KRGG G     +VPKG
Sbjct: 718 GCGKRTAVSEYRLQKRGGKGMINLRIVPKG 747


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 437/755 (57%), Gaps = 46/755 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +RA+  +E  G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR PQ++ L   L  +L H++EV+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L + +          +  ++  + D + 
Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D++L  +  G+ Y L    +  LS +  G  I  +I+L+ ++ I T      
Sbjct: 548 QLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607

Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            DS    LV V+ KG       S      R GK  +K   ++++  V    G+   ++G 
Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667

Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716
            +  LI F    +  MSR     KG+RL   +DG   +VI   + +      +  +   G
Sbjct: 668 AQASLIRFKEADVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDKILVVTEKG 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                S  D    L  RGG+G    K   R+G+ +
Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 279/757 (36%), Positives = 422/757 (55%), Gaps = 60/757 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM EMGL     +KKSAR+VG+VIGK HPH
Sbjct: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKFHPH 80

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVRLAQ F  RYPL+ GQGNFG++DGDSAAA RYTE RM ++ + +L  +D+
Sbjct: 81  GDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLDIDK 140

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A +  IDN
Sbjct: 141 DTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHRIDN 200

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE +++ +L++I GPDFPT GI++   + +  +Y  GRG  ++RAR  ++++  G   IV
Sbjct: 201 PESTLDDILKFIKGPDFPTAGILMGVSD-LKTAYLTGRGAIKIRARAEIQQLKSGKEQIV 259

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           +TEIPYQV KS LIEKIAEL+  K I  + ++RDES  D +R+V+  K   L PD+++  
Sbjct: 260 ITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGEL-PDVILNQ 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ME  F +N   L  GR PQ +PL  IL E++ HR  ++ RR+ F ++  + R+ 
Sbjct: 319 LYKFTQMEVTFGINTVALVNGR-PQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEERLH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL  A  NIDE+IAII+      + K  ++ RFS ++ QV AIL+++L+ L  LE  
Sbjct: 378 ILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDRFSFSDLQVSAILDMKLQKLTGLEIE 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E    L   E   S+LN+ +     I  E+ E+K+ ++      +RRT   E+   
Sbjct: 438 KLVEEYKETLKNIEYYKSILNNHQILMGIIKDELLEIKDKYAD-----KRRT---EIVYD 489

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I    + V I+N+G+I+        S K      SA   K  D ++  +  
Sbjct: 490 HNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGKSATLSKGEDFIETLIVT 549

Query: 558 HTTDRILLLSTDG-----KAYTLPA----------GNLLSGRGHGEAIQLLI---DLNHN 599
               ++L  +  G     K Y LP            NLLS    GE I  ++   DL+H+
Sbjct: 550 SNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLS-FSQGEYIASVVTLSDLDHD 608

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG 658
           + I     Y    K  V             E   + R G   +K+  ++E +  V+    
Sbjct: 609 KYIFMCTKYGIVKKTAV-------------EEFKSGRSGIVAMKLRENDELVSTVITTDN 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS-AG 716
           D++ +   N K + F   ++ +M R   GVR  + ++     V+  ++  G  +I +   
Sbjct: 656 DNITIATRNGKTIQFESKEVRDMGRTATGVRGITLEEDDY--VVSMEVLTGAPFILTVTS 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +        +  RGG G  + K  P++G  + +
Sbjct: 714 NGYGKCSLVSDYRIQSRGGKGLKLSKVTPKTGPIVGA 750


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 266/692 (38%), Positives = 414/692 (59%), Gaps = 32/692 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +E +  V +   ++  +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+     
Sbjct: 3   LNKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 63  FKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +++ +++D VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+I
Sbjct: 123 TEARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E  +A  A++DNPEIS+ +L++ YI GPDFPTGGII+  R  I +++  GRG  
Sbjct: 183 PPHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VR++  +E++G G   IVVTEIPYQV K+ LI KIA+L+  K+I  +  + DES  E +
Sbjct: 242 MVRSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  + +   PD+++  ++ ++ ++T F +NM  L + + P+ M +   L+ ++ H+ 
Sbjct: 302 RIVIELR-KDAQPDVILNQLYRMTQLQTSFGVNMLAL-VEKTPKQMGIREALQHYVNHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +IR   N+ + +  ++ +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E+S AD     + +I  E + + ++  G+I+ + + +         
Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    +  SGR   G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFV---YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +  ++ V A V    DS    LL V+  G       SE  +  + GK  + +   +++  
Sbjct: 592 D-KEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVG 650

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
           V + TG D + + G N K + F  D I  M R
Sbjct: 651 VKETTGDDEIIIAGSNGKAVRFHEDDIRAMGR 682


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 388/613 (63%), Gaps = 28/613 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKSARIVGEV+GK
Sbjct: 13  LKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGEVLGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEARM+++   +L+
Sbjct: 73  YHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARMSKITAELLE 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP HN+ E+ + +L 
Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNLGELVDGSLQ 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNPEIS  +L+EYI GPDFPTGGII + ++ I ++Y  GRG  RVR +  +EE   G 
Sbjct: 193 LIDNPEISDLELMEYIKGPDFPTGGII-DGKKGIRDAYLTGRGKIRVRGKVKIEENKNGK 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
           + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  E +R+V+  K +  +P+L
Sbjct: 252 FFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK-KGEEPEL 310

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  +++++ F + M  L +  VP+V+ L  +L E+++HR +V+ RR+ F +    
Sbjct: 311 VLNKLYKYTELQSTFGVIMLAL-VNNVPKVLTLKQMLCEYISHRFQVITRRTLFDLDKAQ 369

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  IL+G  IA  NI+ II +IR   + ++ K  ++ +++ TE Q  +IL++RL+ L  
Sbjct: 370 KRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMRLQRLTG 429

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +      G +R T  E
Sbjct: 430 LEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTY------GDKRRTHIE 483

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
             R +   L + +I+ E + +  +N+G+I+ ++++           ++ L+  + D +  
Sbjct: 484 EERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDT 541

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD---IVTAFVY 608
            L A   D +++ +  GK Y +    L  LS +  G  I  L+ +   +    I+   V+
Sbjct: 542 ILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKIRAIIKTRVF 601

Query: 609 DSTCKLLVVSSKG 621
           D   +L+ V+ +G
Sbjct: 602 DKEKELVFVTKQG 614


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/686 (37%), Positives = 400/686 (58%), Gaps = 30/686 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +   +L Y++S I  RA+PD+RDG KPVHRRI+HAM+++G+  G A KKSA
Sbjct: 11  VEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGITSGVAHKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG++DGD AAA RYTEARM
Sbjct: 71  RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGAAAMRYTEARM 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +++ + +D VDF   Y+ E++EPVV PS+ PNLL NG  GIAVGMAT+IP HN+
Sbjct: 131 SKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A  A++DNP+I++ +L+E I GPDFPTGGII+  R+ I +++  GRG   +R+++
Sbjct: 191 SETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIIL-GRKGIRQAFETGRGSIMIRSKY 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            VEE+  G   I+  EIPYQV K+ LI K+A LI  K I  +  + DES  E +RIV+  
Sbjct: 250 RVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNREGIRIVMEL 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K +    ++++  +F L+ ++T F +NM  L  GR P+ +PL  I+ +++ H+ +V+ R+
Sbjct: 310 K-KDAQEEVILNQLFRLTPLQTSFGINMLALENGR-PKQLPLKDIIHDYIDHQVDVVVRK 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVSRFSLTENQVDAI 431
           + F ++    R  IL+GL IA  +IDE+I +IR+  K +      +   F L+  Q  AI
Sbjct: 368 TQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQDLCDAFGLSMIQAKAI 427

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I++E   LL   E +  +L +  +    I  ++ E+ + +     
Sbjct: 428 LAMQLRRLSGLERDKIENEYQQLLLTIEDLKDILANHDRVLQIIRDDLNEIDQKYGDE-- 485

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RRT   E+S A      + +I  E + + ++  G+I        R+       + +L
Sbjct: 486 ---RRT---EISDASVDMEDEDLIPVEDVIITLTESGYIKRQLVDTYRAQNRGGRGIKSL 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQD 601
              E DS+   +   T D +LL +  G+ Y L   N+ SG    + I +  L+ L   + 
Sbjct: 540 TLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNVPSGSRTSKGIPIVNLMTLEKGEK 599

Query: 602 I---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +   V     D +  LL V+  G       SE     R GK  + +  +++++ V   TG
Sbjct: 600 VNVLVAVPKDDESETLLFVTKNGIVKRTSVSEFENINRNGKIAISLKPDDELRFVKLTTG 659

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR 683
            D V + G N K + F+ DQ+  M R
Sbjct: 660 QDEVIISGSNGKAVRFNEDQVRIMGR 685


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/766 (36%), Positives = 446/766 (58%), Gaps = 45/766 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   DNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + NPEISIE+L + + GPDFPTG  I+  +  I ++Y+ GRG  ++R
Sbjct: 184 HNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYIL-GKSGIKDAYQTGRGKVKLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A   +E   +    I+V+EIPYQV KSRLIEKIA+L+  K+I  + DIRDES  + +RIV
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++ +++  + +ET F + +N+  +  +PQV+ L  +++ ++ H++EV+
Sbjct: 303 IEIK-RDSNANIVLNNLYKYTQLETTFGI-INLALVDGIPQVLNLKELIEYYIDHQKEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+SF +     R  I++GL+IA  NIDEII IIR   + D+ K +   +F+LT+ Q  
Sbjct: 361 TRRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFNLTDKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  ++ +E   L      + S+LNS +     I  E+ E+K+ FS  
Sbjct: 421 AILDMQLKRLSGLEIDKLNAENKELEETISYLLSILNSEENLIKLIISEMEEIKDKFSDD 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541
               RR     +    D     + +IEKE + + ++N G+I+ L   ++ V       ++
Sbjct: 481 ----RRSKIIPDEGEID----IEELIEKEDVLLTLTNDGYIKRLPIDTYKVQNRGGKGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A + KEGD +K     +T + +L  ++ GK Y+L    +  G  +  G AI  +++L   
Sbjct: 533 AGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRGTAIINILNLESG 592

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656
           + I          +   +V+ +K       E+E   N RK G   + +   +K+  V ++
Sbjct: 593 ERITEMMTLSELNEDSQIVLQTKDGTIKKTEAENFTNIRKNGIIAISLKDGDKLISVRQI 652

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI-- 712
             +   ++   + + I F+   +  M R  +GVR     +G   +V+   I    T++  
Sbjct: 653 DKEEELIISTKKGMTIQFNSQDLRSMGRIAQGVRAIKLAEG--DEVVSMNIKGDETYLLV 710

Query: 713 ---DSAGR--SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  G+  S+N  +N        RGG G    K   ++GK + +
Sbjct: 711 VTENGFGKKTSFNNFKNQ------NRGGKGVKCHKVTDKTGKVVDT 750


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/613 (38%), Positives = 388/613 (63%), Gaps = 28/613 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKSARIVGEV+GK
Sbjct: 13  LKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGEVLGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEARM+++   +L+
Sbjct: 73  YHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARMSKITAELLE 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP HN+ E+ + +L 
Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNLGELVDGSLQ 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNPEIS  +L+EYI GPDFPTGGII + ++ I ++Y  GRG  RVR +  +EE   G 
Sbjct: 193 LIDNPEISDLELMEYIKGPDFPTGGII-DGKKGIRDAYLTGRGKIRVRGKVKIEENKNGK 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
           + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  E +R+V+  K +  +P+L
Sbjct: 252 FFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK-KGEEPEL 310

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  +++++ F + M  L +  VP+V+ L  +L E+++HR +V+ RR+ F +    
Sbjct: 311 VLNKLYKYTELQSTFGVIMLAL-VNNVPKVLTLKQMLCEYISHRFQVITRRTLFDLDKAQ 369

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  IL+G  IA  NI+ II +IR   + ++ K  ++ +++ TE Q  +IL++RL+ L  
Sbjct: 370 KRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMRLQRLTG 429

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +      G +R T  E
Sbjct: 430 LEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTY------GDKRRTHIE 483

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
             R +   L + +I+ E + +  +N+G+I+ ++++           ++ L+  + D +  
Sbjct: 484 EERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDT 541

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD---IVTAFVY 608
            L A   D +++ +  GK Y +    L  LS +  G  I  L+ +   +    I+   V+
Sbjct: 542 ILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKIRAIIKTRVF 601

Query: 609 DSTCKLLVVSSKG 621
           D   +L+ V+ +G
Sbjct: 602 DKEKELVFVTKQG 614


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/633 (38%), Positives = 394/633 (62%), Gaps = 43/633 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN  +EE +K         E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+  
Sbjct: 5   SNRYIEEELK---------ESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTN 55

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKKSARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 56  DKPFKKSARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAA 115

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMA
Sbjct: 116 MRYTEARMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMA 175

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ + +L LIDNP+IS  +L+EYI GPDFPTGGII + ++ I ++Y  GRG
Sbjct: 176 TNIPPHNLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGII-DGKKGIRDAYLTGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
             RVR +  +EE   G + I++ EIPYQ+ K+ LIE+IA L+  K+I  + D+RDES  E
Sbjct: 235 KIRVRGKVKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNRE 294

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  K +  +P+L++  ++  +++++ F + M  L +  VP+++ L  +L E++ H
Sbjct: 295 GIRVVIELK-KGEEPELVLNKLYKYTELQSTFGVIMLAL-VNNVPKILTLKQMLSEYIGH 352

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R +V+ RR+ F +    +R  IL+G  IA  NI+ II +IR   + ++ K  ++ +++ T
Sbjct: 353 RFQVITRRTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFT 412

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           E Q  +IL++RL+ L  LE  ++++E   L+ L+ E   +  +L+   + ++ +  E+ E
Sbjct: 413 EIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILE---LQDILSHDSKIYDIMKKELLE 469

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539
           VKE++      G  R T  E  R +   L + +I+ E + +  +N+G+I+ ++++     
Sbjct: 470 VKEVY------GDNRRTHIEEERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQ 521

Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                 +S L+  + D +   L A   D +++ +  GK Y +    L  LS +  G  I 
Sbjct: 522 NRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLIS 581

Query: 592 LLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
            ++ +   +    I+   ++D   +L+ V+ +G
Sbjct: 582 NILRIGEEEKIRAIIKTRIFDKEKELIFVTKQG 614


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/624 (40%), Positives = 380/624 (60%), Gaps = 30/624 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPVHRRI+ AM E+  DF   +KKSAR+VG+VIGK HPH
Sbjct: 21  YLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYKKSARVVGDVIGKYHPH 80

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  +D+
Sbjct: 81  GDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTEVRMAKLANELLADIDK 140

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF D Y+    EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+  A +AL+DN
Sbjct: 141 DTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPPHNLGEVARALVALLDN 200

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG-SWCI 268
           P+I + +L+ ++ GPDFPT G I    E I ++YR GRG  ++RA+  +E V R     I
Sbjct: 201 PDIGVRELMRHVPGPDFPTRGFI-HGAEGIEQAYRDGRGSIQIRAKANIETVARTKKTSI 259

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RL+EK+AEL+  K+I  + D+RDES  D   V+F   R   P +++  
Sbjct: 260 IVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRVVFDLRRDAVPQVVLNQ 319

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +F  + M+T F +NM  +  GR P++M L  +L+ ++ HRRE++ RR++F +   + R  
Sbjct: 320 LFKFTQMQTTFGINMLAIDRGR-PRLMGLKDVLELFIEHRREIVLRRTAFDLAKAEARAH 378

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  N+DE+I +IR    P   K  ++SRFSL+E Q  AIL +RL+ L  LE  
Sbjct: 379 ILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSRFSLSEKQAQAILEMRLQRLTGLERD 438

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E   ++ E  ++  +L S ++    I  E   + E F       +RRT    V R 
Sbjct: 439 KIMAEYREVIKEIARLRHILESDEEVRRIIREETLLLAEEFGD-----KRRTEI--VGRV 491

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
               L+  MI +E + V +S+ G+I        R+ +        +  K+ D ++    A
Sbjct: 492 SDIELED-MIAEEEMVVTLSHGGYIKRTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTA 550

Query: 558 HTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
            T   +L+ +  G+ Y L    +  +GR   G+AI  L+ +  ++ + T      +    
Sbjct: 551 STHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKAIVNLVQMLPDESVSTVLAVREFVEGR 610

Query: 613 KLLVVSSKGNAFIVEESEIIANTR 636
           ++++ + KG   +++++E+++ +R
Sbjct: 611 QVIMATQKG---VIKKTELMSFSR 631


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/613 (41%), Positives = 382/613 (62%), Gaps = 28/613 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M+E+ L     ++KSARIVG+V+GK
Sbjct: 19  MKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPDKPYRKSARIVGDVLGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY ++V++AQ F  R PL+ G GNFG++DGDS AA RYTEARM++++  +L+
Sbjct: 79  YHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAMRYTEARMSKLSMELLR 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   ++E   EP+V P++FPNLL NG++GIAVGMATSIP HN+ E+ +A + 
Sbjct: 139 DIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID P+  +E+L+ Y+ GPDFPTG II+ + ESI E+YR GRG  +VRAR  +EE+ +G 
Sbjct: 199 LIDRPDADVEELMGYVKGPDFPTGAIIMGT-ESIKEAYRTGRGKIKVRARAEIEELPKGK 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             IVVTEIPYQV K+RL+E+IAEL+  K+I  + D+RDES  + +RIV+  K R ++ ++
Sbjct: 258 QQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGMRIVIELK-RDVNANI 316

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  S ME    + M  L  G  P+ + L  +L  ++ H+++V+ RR+ + +   +
Sbjct: 317 ILNNLYKHSQMEETISVIMIALVNGE-PKCLNLKEVLHYYIEHQKDVVTRRTKYELNKAE 375

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NID +I  IR+     + K  +V RF LTE Q  AIL +RL  L  
Sbjct: 376 ARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFGLTEIQAQAILEMRLNRLTG 435

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I +E D L+ +  ++  +L S +     I  EI E+K   +K TD   RRT   E
Sbjct: 436 LEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEIK---NKYTD--ERRT---E 487

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
           +  A+       +I++E I + +++ G+I        RS K     +SAL  +E D +K 
Sbjct: 488 IQHAEGEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISALTTREEDFVKH 547

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST 611
            +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L   + I T    D  
Sbjct: 548 LISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGEKIATLIDVDGK 607

Query: 612 CK---LLVVSSKG 621
            +   LL+ + KG
Sbjct: 608 EENKYLLIATKKG 620


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 284/786 (36%), Positives = 435/786 (55%), Gaps = 66/786 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL   A +KKSARIV
Sbjct: 11  VNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+T++
Sbjct: 71  GEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+D ++    EPVV P+  PNL+ NG  GIAVGMAT IP HN+ E 
Sbjct: 131 AEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIPPHNLGEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+IDNP+IS+++LL+++  PDFPTGGII      + E+Y  GRG   +RAR   E
Sbjct: 191 VDALVAMIDNPDISLDELLKHLPAPDFPTGGIIY-GYSGVKEAYATGRGRILIRARIHEE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E+  G   +V+TEIPYQV KS LIEKIA L+  +RI  + DIRDES  E +R+VL  +  
Sbjct: 250 EIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLRVVLELRKD 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++ P ++   ++  +  +  F +NM  L  GR P+ + L  +++ +L HR EV+ RR+ F
Sbjct: 310 AV-PLVIQNQLYKYTPCQQTFGVNMVALVNGR-PRTLTLKELMRHYLDHRHEVVTRRTRF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------ 414
            ++  + R  IL+GL IA  ++D +I IIR    P                         
Sbjct: 368 ELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPEQRERLG 427

Query: 415 -PV-MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            PV  +S F+LTE Q +AIL LRL  L  LE  +++ E   LL E E++ S+L S   +W
Sbjct: 428 LPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILASEPLRW 487

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  E+ E+K+ ++ +     RRT        D A   + +IE E + V +S++G I+ 
Sbjct: 488 QIIREELLELKQKYADA-----RRTEIDYAGGGDFAI--EDLIEDEQVVVTLSHQGLIKR 540

Query: 533 LKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGN 579
              H         V + A   +E D ++        D +L  +  G+ Y L     P G+
Sbjct: 541 TPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPEGS 600

Query: 580 LLS-GRGHGEAIQLLID------LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
             S GR     IQ+  D      LN  ++      +  T  +L+ + +G   +V+++E+ 
Sbjct: 601 RTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQG---LVKKTELE 657

Query: 633 ANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
           A +R +    + ++  E  +L+  V  D   HV +     +++ F    +  M R  +GV
Sbjct: 658 AFSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGV 717

Query: 688 RLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R  + + G  +  ++          +  +   Y +        + +RGG G    K  PR
Sbjct: 718 RGIALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777

Query: 747 SGKFLS 752
           +G+ ++
Sbjct: 778 TGRLIA 783


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/656 (38%), Positives = 405/656 (61%), Gaps = 30/656 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 5   QNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPTRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD+AAA RYTE 
Sbjct: 65  SARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A+ +L+ + +D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 125 RMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +A + +PEISI+ L+E I GPDFPTG +I+  +  I E+Y+ GRG  + RA
Sbjct: 185 NLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALIL-GKSGIKEAYKTGRGKIKQRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
              +E   +    I++TEIPYQV K+RLIEKIA+L+  KR+  + DIRDES  + +RIV+
Sbjct: 244 VAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  +P++++ +++  + +E  F + +N+  +   P+++ L  +++ ++ H++EV+ 
Sbjct: 304 EIK-RDSNPNIVLNNLYKYTQLENTFGI-INLALVAGEPKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR   + D+ K +   +F LTE Q  A
Sbjct: 362 RRTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDKFKLTEVQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E D L    + + S+LNS +   N I  E+ E+KE ++   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENDELARMIDYLLSILNSEETLINLIIDEMTEIKEKYADD- 480

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541
               RRT        D+  ++   + E+E I + ++  G+I+ L   ++ V       ++
Sbjct: 481 ----RRTQIV----PDEGEIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
           A + KEGD +K  +  +T + +L  ++ GK ++L A  +   S    G+AI  +++L   
Sbjct: 533 AGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLESG 592

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + I          K   +V+ +K       ++E  AN RK    + +S +E  KL+
Sbjct: 593 ERITEMMTLSDLHKNSQIVLQTKNGTIKKTDAENFANIRKN-GIIAISLQENDKLI 647


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 277/762 (36%), Positives = 421/762 (55%), Gaps = 67/762 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++E+L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKEELEDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G     KAY +P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  +IDL    + V  F+     +  VV        +EE   I   R G   + +   ++
Sbjct: 600 VTTMIDLERIHEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDR 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFK 704
           +  V   TG+   ++G    + I FS   +  M R     +G++L +       DV+   
Sbjct: 651 LISVSVTTGNQDILIGTKLGIAIRFSESDVRLMKRAAHGVRGIKLNT------GDVV--- 701

Query: 705 ICEGLTWID-SAGRSYNRSE------NDLLGW-LGKRGGVGS 738
           +  G+   D S  + +  SE      ND   + L KRGG GS
Sbjct: 702 VGAGVLNADESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 743


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 357/572 (62%), Gaps = 20/572 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +   YL YA+S I  RA+PD+RDG KPV RR ++AM ++GL   A ++KSA
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTEAR+
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++ + EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +EIC+  + LID+P+ +IE L + + GPDFPTGGII+  RE I+ +Y  G+G   VRA+ 
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIIL-GREGILSAYGTGKGKIIVRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+VTE+PYQV K+ LIEKIAEL+  +RIP + DIRDES  +   ++   
Sbjct: 245 HIEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P  ++  ++  + M+T F +N   L  G VP+++ L  +++ ++ HR+ V+ RR+
Sbjct: 305 RREAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + +     R  +L+GL+IA  N+D +I  IRN    D  K  ++  F LTE Q  AIL+
Sbjct: 365 EYDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQDFGLTEVQAQAILD 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ EL  + A+  + +S+L S ++    +  +++E+++ +       
Sbjct: 425 MQLRRLAALERQKIEDELKEVRAQIREYESILASPEKVLAIVKSDLQEIRDKYGDE---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALHF 545
            RRT   E S   +    + +I    + V +++RG+I+ L   +          ++ +  
Sbjct: 481 -RRTKIVEASGDIR---DEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           K+ D ++  L  +T D +L  +  GK Y + A
Sbjct: 537 KDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKA 568


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 285/769 (37%), Positives = 442/769 (57%), Gaps = 48/769 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+N K V++   L + Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+G  +   
Sbjct: 2   LTEQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++A  +L  ++++ VDF   Y++   EP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+ID+P +  E L   I GPDFPT G I+  RE I ++Y  GRG  +
Sbjct: 182 PPHNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFIL-GREGIRKAYETGRGIVQ 240

Query: 252 VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
           +RAR  VE+  R S   IVVTEIPYQV K+RLIEKIAEL+ +++I  + D+RDES  E +
Sbjct: 241 MRARALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGI 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K + + P++++  ++ ++ M++ F + M  +  G+ P+V+ L  +L+ ++ HR+
Sbjct: 301 RVVVELK-KDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQ-PRVLSLRAVLEHFIEHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           E++ RR  F ++  + +  IL+G  IA  N+DE+IAII+    P   K  ++ RF+L+E 
Sbjct: 359 EIVTRRCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  +E  +I +E   +LA   ++  +L S  +    I  E+ E++E F
Sbjct: 419 QAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEILASEVEILKIIKSELSEIREKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
           +       RRT   +  R D +   + +I  E + V +S+ G+I        RS +    
Sbjct: 479 ADP-----RRTEIVD-HRGDLSL--EDLIVDEDMVVTVSHSGYIKRNAVSLYRSQRRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            ++ +  KE D ++    A T   +L+ +  GK Y L    +  G     G+AI  L+ L
Sbjct: 531 GVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGRASRGKAIVNLLQL 590

Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLV 653
              +++ +   V + T    ++ +  N  IV++++++  AN R G   + ++ +E  +LV
Sbjct: 591 QSGENVTSILPVREFTEGRYIIFATQNG-IVKKTDLMAYANPRSG-GIIALTIDEGDRLV 648

Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
                D    V +  +N K + F       M R  +GVR  + +  G   VI  ++    
Sbjct: 649 STRLSDGEMDVLLASQNGKAIRFPEKDARAMGRTSRGVRGMALE--GDDQVIGMEVVSDT 706

Query: 710 TWIDSA-------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           T            G+  N  E    G    RGG G +  K   R+GK +
Sbjct: 707 TAATLVTVTEHGYGKRTNLDEYRQQG----RGGKGIITIKTSERNGKVV 751


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 366/618 (59%), Gaps = 36/618 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR  V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLNVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L+S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILSSEARQRQIIKDELDDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G     KAY +P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFV 607
           +  +IDL   Q+ V  F+
Sbjct: 600 VTTMIDLERVQEDVNLFM 617


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 274/781 (35%), Positives = 449/781 (57%), Gaps = 70/781 (8%)

Query: 13  VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +E+N   ++LR     +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL + 
Sbjct: 1   MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA 
Sbjct: 61  KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD +D Y+    EP V PS+ PNLL NG+SGIAVGMAT
Sbjct: 121 RYTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG 
Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLL-GRSGIVKAYTTGRGS 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +R +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES  + 
Sbjct: 240 VIMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + R ++ ++++ +++ L+ ++  F +NM  L  G VP+++ L  +L  +L H+
Sbjct: 300 MRIVIELR-RDVNSNVILNNLYKLTPLQGSFGVNMIALVDG-VPKLLNLKEVLYYYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           +EV+ RR+ F +     R  IL+GL IA  NID II++IR     ++ K  +++ FSL+E
Sbjct: 358 KEVVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINEFSLSE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+   E ++ +L   ++    +  E+ EVKE 
Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLEDILAKPERVLEIVKEELLEVKEK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           F       +RR+   E  + D+    + +IEKE I + +S+  +I+ L + +        
Sbjct: 478 FGD-----KRRSVIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG-------- 587
             ++ +   + D++   L   T D IL  +  GK YTL     N +S +  G        
Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590

Query: 588 ----EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN-AFIVEESEIIANTRKGKTFL 642
               E +  +I ++  Q+  T+ ++ +   ++  S  G+ A I+++ +I     +G + +
Sbjct: 591 IEKEEKVNSIIAISDLQEEGTSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSLI 650

Query: 643 KVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699
            V   ++E+  ++V   G  + +  E        + Q+  +SRG KG+ L         D
Sbjct: 651 DVQRITDEQDIMIVTANGQAIRINAE-------KVRQMGRVSRGVKGITLSP------DD 697

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKFL 751
            +      G+  +D + +    +EN  +G + K        RGG G  V K   ++GK +
Sbjct: 698 YVI-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKIV 751

Query: 752 S 752
           +
Sbjct: 752 A 752


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 284/768 (36%), Positives = 437/768 (56%), Gaps = 51/768 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NP ++ E+L+E I GPDFPT G I   RE IV +Y  GRG  +
Sbjct: 182 PPHNLSEVIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIY-GREGIVSAYGTGRGIIQ 240

Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
           +RAR  +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  E +
Sbjct: 241 MRARAMIETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K +  +P +L+  ++  + M++ F + M  +   R P+V+ L   +  ++ HRR
Sbjct: 301 RIVIELK-KDENPQILLNHLYKQTQMQSSFGIIMLAIVNNR-PRVLTLRETINYFIDHRR 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           E++ RR+ F ++  + R  IL+GL IA  N+DE+I +I++   P   K  ++SRF L+E 
Sbjct: 359 EIVTRRTIFDLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSRFGLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I +E   +L    ++  +L S  +  N I  E+RE+K+ F
Sbjct: 419 QAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEILNIIVGELRELKDKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                  +RRT    VS+  + +L+  ++E E + V IS+ G+I        R+ +    
Sbjct: 479 GD-----KRRTEI--VSQTAEISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDL 596
             + +  KE D ++    A + D ++  +  GK Y L    +  +GR   G+AI  L++L
Sbjct: 531 GKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKAIVNLLNL 590

Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + N+ I     V + T    ++ +  N  + +   +  +  +    + V+ +E  KL+  
Sbjct: 591 STNEKITAILPVKEFTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITV 650

Query: 656 VTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-----------SDV 700
              D    V +  +N K + F    +  + R  +GVR  + +D  +           +D 
Sbjct: 651 ALTDGRQDVLLASKNGKSIRFKESDVRTVGRVSRGVRGMTLEDDDVVIGMEILNENFTDS 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             F + E     +  G+    SE         RGG G +  K   R+G
Sbjct: 711 TLFTVTE-----NGFGKRTELSEY----RCQSRGGKGVITIKTTERNG 749


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  +    +++I        + +
Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  +    +++I        + +
Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/692 (38%), Positives = 415/692 (59%), Gaps = 32/692 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +E +  V +   +   +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+     
Sbjct: 3   LNKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 63  FKKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +++ ++++ VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+I
Sbjct: 123 TEARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E  +A  A++DNP+IS+ +L++ YI GPDFPTGGII+  R  I +++  GRG  
Sbjct: 183 PPHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VR++  +E++G G   IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  E +
Sbjct: 242 LVRSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  + +   PD+++  ++ ++ ++T F +NM  L + + P+ M +   L+ ++ H+ 
Sbjct: 302 RIVIELR-KDAQPDVILNQLYRMTQLQTSFGVNMLAL-VDKTPKQMGIREALQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +IR   N+ + +  ++ +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+A    +  +L +  +  + I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANHDRVLSIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT   E+S AD     + +I  E + + ++  G+I+ + + +         
Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    +  SGR   G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFV---YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +  ++ V A V    DS    LL V+  G       SE  +  + GK  + +   +++  
Sbjct: 592 D-KEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVG 650

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
           V + TG D + + G N K + F  D I  M R
Sbjct: 651 VKETTGDDEIIIAGSNGKAVRFHEDDIRAMGR 682


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/690 (37%), Positives = 414/690 (60%), Gaps = 42/690 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSARIVGEVIGK
Sbjct: 18  MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR++++A  +L+
Sbjct: 78  YHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+ E+SEPVV P+++PNLL NG  GIAVGMAT+IP HN+ E+ +   A
Sbjct: 138 DLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQA 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ GRG   +RA+  +EE+G  +
Sbjct: 198 LIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKTTIEEIGNKA 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES      V+    R ++P+++
Sbjct: 257 R-IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVVIELRRDVNPNVV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + M++ F +NM  + +   P+++ L  +L  +L H+ EV+ RR+ F ++  + 
Sbjct: 316 LNNLFKHTAMQSNFGINMLAI-VNNEPKILNLKDVLYHYLKHQVEVIRRRTEFDLKKAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  ++DE+IA+IR+    +     ++ RFSLT  Q  AIL++RL+ L  L
Sbjct: 375 RAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQSQAILDMRLQRLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I++E + L+ +  +   +L +     N I+ E+ E+KE F+       RRT   E+
Sbjct: 435 EREKIENEYNELIQKIAEYREILANEHLVLNIISEELNELKERFADD-----RRT---EI 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +  +++ L + +I +E + + +++ G+I        RS K     +  +  K+ D ++  
Sbjct: 487 TVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHL 546

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607
              ++   +L  +  GK Y + A  +  LS    G  I  LI +   + I     +  FV
Sbjct: 547 FITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV 606

Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            DS   L   +  G   I++++ +   AN RKG        E+   + VK+T G    ++
Sbjct: 607 EDSY--LFFATQHG---IIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 665 GENRKLLI-FSIDQIPEMSRG----KGVRL 689
           G  + + I F    +  M R     KG+ L
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGINL 691


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKKDQIISIAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  +    +++I        + +
Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 355/572 (62%), Gaps = 21/572 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ + +   +   YL YA+S I +RA+PD+RDG KPV RRI++AM EMGL   + F+KS
Sbjct: 5   TVRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+   HPH D +VYD+LVR+ QPF  RYPL+ GQGNFG++DGDSAAA RYTEA+
Sbjct: 65  AGIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAK 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  ++E +LQ +D++ VDF+  Y+ E  EPVV P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 125 LAAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+  + LIDNPE + + LLE I GPDFPTGG+I+  RE I  +Y  G+G   +RAR
Sbjct: 185 LAEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVIL-GREGIRAAYATGKGRVVIRAR 243

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +EE+ RG+ + I+VTE+PYQV K+ L+EKIAEL+ A RI  + D+RDES      ++ 
Sbjct: 244 THIEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P  ++ ++F  + ++  F +NM  L  G  P+V+ L  +L+ +L HR+EV+ R
Sbjct: 304 ELKRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+   +    RR  IL+GL IA  ++DE+I  IR     +  +  +++RF  TE Q +AI
Sbjct: 364 RTEHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINRFGFTEVQANAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++LR L  LE ++I++E  +LL E   ++ LL    +    I  E+ ++++ F     
Sbjct: 424 LDMQLRRLAALERHKIENEYRDLLKEIAGLEELLADPAKILAVIREELVQLRDKFGDE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   +VS        + +I    + V+I+NRG+++ +   +          ++ +
Sbjct: 482 ---RRTLIQDVS---GEITDEDLIPDVSVLVMITNRGYVKRIADGTYRQQHRGGRGVTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             +E D +   + A T D +L  +  G+ + L
Sbjct: 536 TLREEDGVHRIVAARTHDSLLFFTDRGRVFQL 567


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 481 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 532

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 533 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 593 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGVSKRTPLSSF--------ANIRTNGLI 641

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 642 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 685


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 258/612 (42%), Positives = 386/612 (63%), Gaps = 34/612 (5%)

Query: 10  NTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N L E  E V+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL 
Sbjct: 2   NDLFENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             AA+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AA
Sbjct: 62  HRAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARMT++AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG++GIAVGM
Sbjct: 122 AMRYTEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP H + E+ +A L  ++NPE  +E+L++ + GPDFPTGG+I   ++ I+++Y  GR
Sbjct: 182 ATNIPPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIF-GKKGIIDAYSTGR 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           G  +VRA+  +E+  +    IV+ E+PYQV KSRLIE IA+L+  K+I  + +IRDES  
Sbjct: 241 GRIKVRAKTHIEQ-HKNREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDR 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E +R+V+  K  ++  D+++ ++F  + M+T F + M  + + + P+V  L  +L  ++ 
Sbjct: 300 EGIRVVIELKRDAM-SDIVLNNLFKSTQMQTTFGIIMLAI-VNKEPKVFTLPELLDLFIN 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I IIR   ++ + +  ++SRF L
Sbjct: 358 HRKTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSRFDL 417

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL +RLR L  LE  +I+SEL  L    E ++S+L S       I  E+ EVK
Sbjct: 418 SEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESILKSETMIEEIIKKELLEVK 477

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           E FS       RRT   E+         + +I  EP+ V I++RG+I+ +     +    
Sbjct: 478 EAFSDE-----RRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRR 529

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
                +A+   E D ++    ++T D ++ ++  G     K Y +P G   S    G+A+
Sbjct: 530 GGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEG---SRTAKGKAV 586

Query: 591 QLLIDLNHNQDI 602
             LI+L+ ++ I
Sbjct: 587 VNLINLDKDEKI 598


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 272/754 (36%), Positives = 418/754 (55%), Gaps = 51/754 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G     KAY +P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  +IDL    + V  F+     +  VV        +EE   I   R G   + +   ++
Sbjct: 600 VTTMIDLERIHENVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDDGDR 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704
           +  V+  TG+   ++G    + I  + + +  M R   GVR    K G +   + V+   
Sbjct: 651 LISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESD 710

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             E   +  S      R+E D    + KRGG+G+
Sbjct: 711 ESEAQVFTISEEGYGKRNEADAYN-VQKRGGIGT 743


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGVSKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 272/754 (36%), Positives = 418/754 (55%), Gaps = 51/754 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD+SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR  V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLNVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G     KAY +P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  +IDL    + V  F+     +  VV        +EE   I   R G   + +   ++
Sbjct: 600 VTTMIDLERIHENVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDDGDR 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704
           +  V+  TG+   ++G    + I  + + +  M R   GVR    K G +   + V+   
Sbjct: 651 LISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESD 710

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             E   +  S      R+E D    + KRGG+G+
Sbjct: 711 ESEAQVFTISEEGYGKRNEADAYN-VQKRGGIGT 743


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/690 (37%), Positives = 396/690 (57%), Gaps = 25/690 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M  +  L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+ G GNFG++DGD+AAA RYTE
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  ++  +L  + +  V FR  Y+   SEP+V PS+ P LL NGT+GIAVGMAT+IP 
Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+C+A  ALI+N  ++++ L++++ GPDFPTGG I+ S+  + E Y  G+G  R+R
Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             + +E+V +G   I++T IPY V KS L+ KI +L+  +++PLL D+RDES ++VRIVL
Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKEVRIVL 334

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHR 368
             K R   P+L+M  ++  + ++T F +N+  L     P+V     + L  IL+ +L  R
Sbjct: 335 EFK-RDASPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLT 424
            EV+ +R    +  + +RV IL+G    Y  +DE+I IIR     +D  K +M +RF L 
Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLM-ARFKLD 452

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E QVDAIL ++L  L +LE   I+ EL     E ++I+ +L   ++ W  +  E+ E+K 
Sbjct: 453 EVQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKA 512

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            ++      +RRT        +    + A I  E   VV++  GWI+ ++    D S   
Sbjct: 513 TYND-----KRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRVREVK-DPSTTR 566

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            +EGD++   L       ++L S  G AY     ++ +  G+G+ +Q L   +  + IV 
Sbjct: 567 LREGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVG 626

Query: 605 AFVYDSTC----KLLVVSSKGNAFIVE-ESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
           A   DS      KL+ V+  G       E  +  +TR G+ + K    +++  V  V   
Sbjct: 627 ALSLDSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEK 686

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGV 687
           D +AV+ E     +    ++ E++  GKGV
Sbjct: 687 DLLAVLTERTYATVCRAAEVNELAGPGKGV 716


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/686 (37%), Positives = 417/686 (60%), Gaps = 28/686 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+ L +   ++KSARIVG+ +GK
Sbjct: 23  MQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKPYRKSARIVGDTMGK 82

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VRLAQ F  RYPL+ G GNFG+IDGDS AA RYTEA+MT++   +L+
Sbjct: 83  YHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRYTEAKMTKMTGEMLR 142

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VD+   ++E   EPVV PS+FPNLL NG++GIAVGMAT+IP HN++E+ +A +A
Sbjct: 143 DISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATNIPPHNLREVVDAIIA 202

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP I I  L++Y+ GPDFPTGGII+  +  I  +Y  GRG  ++R++  +EE+ +  
Sbjct: 203 LIENPNIEINDLIKYVKGPDFPTGGIIM-GKTGIYNAYTTGRGRIKLRSKTHIEEISKKR 261

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPY V K++++EKIA+L+  K++  + DIRDES  +   V     + ++  ++
Sbjct: 262 QRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIRVAIDLRKDVNASII 321

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + +N+  +   P+V+ L  IL  +L H+++++ RR+ + ++    
Sbjct: 322 LNQLYKYTQLQDTFSV-INLALVDNQPKVLNLKEILVHYLNHQKDIIVRRTEYDLKKAKA 380

Query: 386 RVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           R  I++GLLIA  NIDEII IIR + +  +  ++ RF L+E Q  AI+++RLR L+ LE 
Sbjct: 381 RAHIVEGLLIALDNIDEIIKIIRASYNDAEEKLMERFDLSEVQAKAIVDMRLRRLQGLER 440

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++++E   LL   E ++S+L S +   + I  E+ E+K+ +        RRT F EV  
Sbjct: 441 EKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKYGDE-----RRTAF-EVD- 493

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556
            D+    + +IE+E I V I++ G+++ L + +          ++AL  +E D +K    
Sbjct: 494 -DEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGVTALSTRENDFVKHLFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
             T   I+  +  GK Y L    +   S    G AI  L+ L+  + I TA +     K 
Sbjct: 553 TTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLALDPGEKI-TAVIPIKEFKD 611

Query: 614 --LLVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
              LV++++   F     +E  ++ + G   + ++ ++++  V    G+   ++G ++ L
Sbjct: 612 DEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQNIILGTHKGL 671

Query: 671 LI-FSIDQIPEMSR-GKGVRLQSYKD 694
            I F+   +  + R  KGV+  S KD
Sbjct: 672 AIKFNEADVRAIGRVSKGVKGISLKD 697


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/579 (41%), Positives = 360/579 (62%), Gaps = 32/579 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LID+PE ++E+L+E I GPDFPT G+I+ + E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGT-EGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES  + +R+V+  
Sbjct: 245 HIEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILL 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374
           K  +  P  ++ +++  + M+T F +NM  L   GR P+V+ L  +L+E++ HR+EV+ R
Sbjct: 305 KQDA-QPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +     R  IL+GL IA  N+D +I  IR+    +  +  ++  FSLTE Q  AI
Sbjct: 364 RTEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRNFSLTERQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +     
Sbjct: 424 LELQLRRLAALERQKIEEEYREVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDP-- 481

Query: 492 LGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
              RRT        EVS  D       +I    + + +++RG+I        R+ +    
Sbjct: 482 ---RRTRIIPDVTGEVSDED-------LIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  +  +E D ++  L  ++ D +L  +  GK Y + A
Sbjct: 532 GIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKA 570


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/703 (36%), Positives = 414/703 (58%), Gaps = 48/703 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +        
Sbjct: 480 FND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582
             +  +   + D ++  L   T D IL  +  GK Y                +P  NLL 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL- 591

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641
           G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G   
Sbjct: 592 GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLIA 641

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
           + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 642 ISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/668 (40%), Positives = 397/668 (59%), Gaps = 60/668 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM   GL  G  + K 
Sbjct: 3   NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGDQ+VYD+LVRLAQ F  RYPLI GQGNFG+IDGD  AAYRYTEAR
Sbjct: 63  AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +LQ +D++ V F   ++    EP+V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + L++NP+IS+E+LLE++ GPDFPTGG I    E I + Y  GRG  R+RA+
Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIY-GIEGIRDLYLTGRGLIRIRAK 241

Query: 256 WCVEEVGRGSWC------------------IVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             +E   +G                     I++TEIPYQV K++LIEKIAEL+  K+I  
Sbjct: 242 VKIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEG 301

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + +IRDES  E +R+VL  K   + P++++ +++  + MET F   +  +  G+ P+++ 
Sbjct: 302 ITEIRDESNREGIRVVLELKKGEM-PEVVLNNLYKHTQMETTFGGILLAIVDGQ-PRILN 359

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           L   L E+L HR++V+ +R++F ++  + +  IL GL IA  N+DE+I+IIR    P   
Sbjct: 360 LKEALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEA 419

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  +++RF LTE Q  AIL++RL+ L  LE  +I  + + +L E E++ ++L S +   N
Sbjct: 420 KMKLMNRFPLTEIQAQAILDMRLQRLTGLEREKIIQDYETILKEIERLKAILESEELVRN 479

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--- 530
            I  E+ E+K+ +      G  R T  E+    K    + +I +E + + +++ G+I   
Sbjct: 480 IIKDELIEIKQKY------GDERKT--EIVTETKEINIEDLITQEDMVITLTHLGYIKRT 531

Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
                RS K     L+ +     D L+  L   T D I+  S  G+ Y L    +  +GR
Sbjct: 532 SLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGRVYCLKVYQIPEAGR 591

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              G+AI  L+ L   + I TA V    CK            +EE  ++  T+KG  F+K
Sbjct: 592 VSKGKAIVNLLPLQEGEKITTALV----CK-----------DIEEGYLMMFTKKG--FVK 634

Query: 644 VSSEEKMK 651
            +S E+ K
Sbjct: 635 KTSLEEFK 642


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/703 (36%), Positives = 414/703 (58%), Gaps = 48/703 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           F+      +RRT         +A   + +I ++ I + +++ G+I+ L + +        
Sbjct: 480 FND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582
             +  +   + D ++  L   T D IL  +  GK Y                +P  NLL 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL- 591

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641
           G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G   
Sbjct: 592 GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLIA 641

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
           + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 642 ISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/607 (41%), Positives = 387/607 (63%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P+V  L  +LK +L HR+ V+
Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKVFSLIELLKLFLNHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N  D P  K +++ +F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I +EL  LLAE E++D +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIDNELKELLAEIERLDEILKSEALLENLIKDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKV 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
             ++ I+
Sbjct: 593 QADEKIM 599


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/731 (35%), Positives = 417/731 (57%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKSNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++        D G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LIDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  +    +++I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 280/767 (36%), Positives = 445/767 (58%), Gaps = 47/767 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   DNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ +++D VDF   ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + +PEISIE L + I GPDFPTG  I+  +  I ++Y  GRG  ++R
Sbjct: 184 HNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYIL-GKAGIKDAYSTGRGKVKLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A   +E   +    IV+TEIPYQV KSRLIEKIA+L+  KRI  + DIRDES  + +RIV
Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++ +++  + +ET F + +N+  +  VP+V+ L  +++ ++ H+++V+
Sbjct: 303 IEIK-RDSNANIVLNNLYKYTQLETTFGI-INLALVDGVPKVLNLKELIEYYIEHQKDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+SF +     R  I++GL+IA  NIDEII IIR   + D+ K +   +F LT+ Q  
Sbjct: 361 TRRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFGLTDKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  ++ +E   L      + S+LNS +   N I  E+ E+KE FS  
Sbjct: 421 AILDMQLKRLSGLEIDKLNAENKELEETIAYLLSILNSEENLLNLIIDEMEEIKEKFSDD 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541
               RR     +    D     + +IEKE + + ++  G+I+ L   ++ V       ++
Sbjct: 481 ----RRSKIIPDEGEID----IEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A + KEGD +K     +T + +L  ++ GK Y+L    +  G  +  G AI  ++ L   
Sbjct: 533 AGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLESG 592

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656
           + I          K   +V+ +K       ++E   N RK G   + +   +++  V ++
Sbjct: 593 EKITEMMTLSELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISVRQI 652

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWI- 712
             +   ++     + I F+   +  M R  +GVR ++  KD    +V+   I    T++ 
Sbjct: 653 DKEEELIISTKNGMTIQFNSADLRSMGRIAQGVRAIKLDKD---DEVVSMNIKGDETYLL 709

Query: 713 ----DSAGR--SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               ++ G+  S+N  +N        RGG G    K   ++GK + +
Sbjct: 710 VVTENAYGKKTSFNNFKNQ------NRGGKGVKCHKVTEKTGKIIDT 750


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 408/693 (58%), Gaps = 35/693 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG II+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L  G  P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR    + + K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT F + +     T    ++  EP+T+ ++   +I+ ++S  +         +S 
Sbjct: 482 ----RRTQFEKSTEGFDLT---DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY--TLPAGNLLSGRGHGEA-IQLLIDLNHN 599
           +  K+ D +   ++  T +R+L  + +GK Y  ++    L S    G A I  +  L  +
Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594

Query: 600 QDIVTAFVYDSTCK----LLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + +      D + +    LL+++  G     ++EE + I   + G   L+++  +++  V
Sbjct: 595 ERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHI--NKNGIIALRLNEGDRLVKV 652

Query: 654 VKVTGDHVAVVGENRKLLI-FSI--DQIPEMSR 683
           + V GD   ++G  + + I FSI  D+I  + R
Sbjct: 653 IPVVGDEDVILGTRKGMAIRFSIADDEIRAVGR 685


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/695 (35%), Positives = 419/695 (60%), Gaps = 39/695 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V++   +E  +L YA+S +  RAIPD RDG KPVHRRI++ MSE+G+  G  +KK
Sbjct: 62  EGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGTQYKK 121

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD  A+ RYTEA
Sbjct: 122 SARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMRYTEA 181

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L+G+ ++ VDF D Y+  + EP V PS+FPNLL +G+ GIAVGMATSIP H
Sbjct: 182 RMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATSIPPH 241

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E  +A +A   N +I++E+LL+YI GPDFPTGG+I+ ++  I+E+Y+ GRG   +R+
Sbjct: 242 NLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTK-GILEAYKTGRGQIPLRS 300

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            + + ++    + I++T+IPY ++KS ++E I++L     +  + D+RDES  D +RIV+
Sbjct: 301 EYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIRIVI 360

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  +P++++  +F  S + T+F +NM  L +   P+++ L  +L  +L H++EVL 
Sbjct: 361 DIK-KGFNPEVVLNKLFKKSSLLTKFSVNMVAL-VNTQPKLLTLKDVLDVYLEHQKEVLT 418

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           R  +F ++     + IL+GLL+A  NID+++A+I+   +++     ++ ++SL+E Q  A
Sbjct: 419 RELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEKYSLSEEQAKA 478

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RL  L  L   ++ +E++ L  E ++I S+L+S ++  N +  ++ ++KE +    
Sbjct: 479 ILNMRLGRLTGLSYSKMTNEIEELRKEIQRITSILDSEQELVNNVIADLEKIKEKY---- 534

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542
             G  R T  + S +     +Q +I ++ I +  +  G+++ +     +L        + 
Sbjct: 535 --GDSRKTSIDASASSSINEEQ-LIPRKDIVITATVDGFVKRVNLEEYNLQNRGGMGSTG 591

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH-- 598
           +    GD++   +  +T   + L S  GK Y L A  +     +  G +   L++LN   
Sbjct: 592 MKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQEADKKSKGNSFANLVELNKEL 651

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTFLKVSSEEKM 650
           N+ I+       Y+S   LL V+ KG   IV+++  + N +K      K F     E+++
Sbjct: 652 NEKIIRILPVDSYESNLHLLTVTKKG---IVKKT-ALDNFKKVRSNGIKAFKLKDEEDEL 707

Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG 684
           K V+ VT   + +V  N K ++ F   +I   +R 
Sbjct: 708 KDVILVTNSDLVLVANNHKNVVKFEASKIRSQARN 742


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/729 (36%), Positives = 417/729 (57%), Gaps = 20/729 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E+  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEVINACLH 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +  G   
Sbjct: 198 LLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++T +P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+  +   +  
Sbjct: 256 --VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSASTKKNIQ 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIEIIRNFDDPSLELQSRFALSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  EKE ++  LNS  +  N +  E++++   F  S     RR+   +  
Sbjct: 434 EIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGDS-----RRSKIVQAD 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +A +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A   ++  ++
Sbjct: 489 KA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  +  GKAY++      S RG+GE I   I L+   +I+     +     L+ S+ G  
Sbjct: 548 IFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIASTSGKG 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++IAN   GK      +++  K +       +  V    + +I   +    + +
Sbjct: 608 FVIPAEDLIANKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFESFAVLKK 665

Query: 684 GKGVRLQSYKDGGISDVI-CFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLV 740
           GKG  +           I  FK+ + LT   SAG+ + R +N      +  K  G G L+
Sbjct: 666 GKGKAIIKLDKKDKLKFIELFKLEQELTL--SAGKRFIRIDNKNFETYYTDKPSGGGVLL 723

Query: 741 PKGFPRSGK 749
           P+GF +  K
Sbjct: 724 PQGFRKITK 732


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/579 (40%), Positives = 365/579 (63%), Gaps = 23/579 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNT---PQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +  +++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+A   ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           KE F+       RRT    V+   +    + +IE+E I + +++ G++        RS K
Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                +  +   E D ++  +   T D IL  S  GK Y
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/606 (39%), Positives = 373/606 (61%), Gaps = 25/606 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RIV+ 
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++  F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKFTDLQNTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              +R T  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 ---KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +  + A T D +++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV 607
           +    V
Sbjct: 592 VSDTIV 597


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 256/693 (36%), Positives = 408/693 (58%), Gaps = 35/693 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG II+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L  G  P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR    + + K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT F + +     T    ++  EP+T+ ++   +I+ ++S  +         +S 
Sbjct: 482 ----RRTQFEKSTEGFDLT---DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY--TLPAGNLLSGRGHGEA-IQLLIDLNHN 599
           +  K+ D +   ++  T +R+L  + +GK Y  ++    L S    G A I  +  L  +
Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594

Query: 600 QDIVTAFVYDSTCK----LLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + +      D + +    LL+++  G     ++EE + I   + G   L+++  +++  V
Sbjct: 595 ERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHI--NKNGIIALRLNEGDRLVKV 652

Query: 654 VKVTGDHVAVVGENRKLLI-FSI--DQIPEMSR 683
           + V GD   ++G  + + I FSI  D+I  + R
Sbjct: 653 IPVVGDEDVILGTRKGMAIRFSIADDEIRSVGR 685


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/703 (35%), Positives = 419/703 (59%), Gaps = 43/703 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  V +   +++ Y+ YA+S I  RA+PD RDG KPVHRRI+++M E G+ +   +KK
Sbjct: 24  EDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEAGITYDKPYKK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPL+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 84  SARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGDSAAAMRYTEV 143

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ V F+  Y+   +EP V P+K PNL+ NG++GIAVGMAT+IP H
Sbjct: 144 RMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIAVGMATNIPPH 203

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  L +IDNP++SI +L   I GPDFPT G I+ + E I  +Y  GRG  ++R+
Sbjct: 204 NLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGT-EGIKSAYETGRGRIKIRS 262

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
              +EE+      IVV+E+PYQV K+ LIE IA L+  K+I  + D+RDES  E +RIV+
Sbjct: 263 VADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDESDREGIRIVI 322

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+ +P++++  ++  + ++  + + +N+  +  VP+V+ L  +L+ +L HR +V+ 
Sbjct: 323 -ELARNTNPNVILNQLYKHTQLQVTYGI-INLALVDGVPKVLNLYELLQIYLNHRMDVIQ 380

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           +RS ++++  + R  IL GL I   N+DE+I+ IRN     + K  ++ +F L E Q  A
Sbjct: 381 KRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEKFQLDEAQAKA 440

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL++L  +E+ +I+SE + L+ +   +  ++ S  +++N I  E+ E+KE ++   
Sbjct: 441 ILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDSRKYNIIKDELTELKENYADE- 499

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLSA 542
               RRT   ++  +D+   ++ +I +E + + I+N G+I+ L      K H     ++ 
Sbjct: 500 ----RRT---DIQSSDEELSEEDLIPEEDVLITITNSGYIKRLPVTTYSKQHRGGRGVAG 552

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           ++ K+ D ++    A T D +LL +  G     K Y +P G   S +  G+A+  L +L 
Sbjct: 553 INVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQG---SKQSRGKALVNLFELE 609

Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++ +   +T   +     LL+ +  G       S     TRK    + ++  E  +LV 
Sbjct: 610 NDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSF--KTRKKSGLIAINLNENDELVN 667

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
            +  D    + +V    K + F+   +  M R     +G+RL 
Sbjct: 668 VILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLN 710


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 375/606 (61%), Gaps = 25/606 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +R+V+ 
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L+   + +  +  E+ E+K+ ++    
Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              +R T  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 ---KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +  + A T D +++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV 607
           +    V
Sbjct: 592 VSDTIV 597


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 263/699 (37%), Positives = 409/699 (58%), Gaps = 37/699 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N  ++I +++EY+ GPDFPTG  I      I++ +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIY-GDSGIIKYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E++G+G   IVVTEIPY V K+ LIEKI EL+  K+I  + D+RDES+ D +RIV+  
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  +F  + ++T F +N N+  +  VP V+ +  ++K +  H+ E+L RR
Sbjct: 324 K-RDVIPEVLLNKLFKTTPLQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEILVRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           ++F ++    R+ I++GL+IA  NIDE+I II+   ++D     ++ RF LTE Q  AIL
Sbjct: 382 TNFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQRFDLTELQTKAIL 441

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L  L   ++K E ++L+   + ++ +LN+  +Q N I CE   +  +  K  D 
Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYNRQVN-IICE--NLDYLIEKFGDE 498

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
            R    +   S  D     + +I  E I V +S RG+ + L        +   V +  L 
Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
             E D ++  L A+T   +L  S  G+ Y L    +  G    + I  +  + +  ++ I
Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614

Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +T    D+     L   +SKG    A + +   I AN   GK  + +   +K+  V++  
Sbjct: 615 LTILPIDNYDQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKDGDKLFSVMQTL 671

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQS 691
           G D V +   N  ++ F+ +   EM R     KG+ L++
Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLEN 710


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/568 (40%), Positives = 362/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   VQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H +
Sbjct: 129 SKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++   
Sbjct: 248 QIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL +A  ++DE+I++IRN       K  ++ +FSLTE Q  AIL+
Sbjct: 367 AFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFSLTEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEVKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
            RRT    V+   +    + +I +E I V +++ G+I+ L S +          +  +  
Sbjct: 483 -RRTEI--VTSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQKRGGKGIQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  +   T D IL  S  GK Y
Sbjct: 540 NEDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 364/618 (58%), Gaps = 36/618 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILGSEARQRQIIKDELDDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G+AY L     P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFV 607
           +  +IDL    + V  F+
Sbjct: 600 VTTMIDLERVHEDVNLFM 617


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 265/729 (36%), Positives = 418/729 (57%), Gaps = 20/729 (2%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E+  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEVINACLH 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +  G   
Sbjct: 198 LLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +++T +P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+  +   +  
Sbjct: 256 --VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSASTKKNIQ 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+G+LIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGMLIAFLNIDEVIDIIRNYDDPSLELQSRFALSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  EKE ++  LNS  +  N +  E++++   F  S     RR+   E  
Sbjct: 434 EIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGDS-----RRSKIVEAD 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +A +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A   ++  ++
Sbjct: 489 KA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  +  GKAY++      S RG+GE I   I L+   +I+     +     L+ S+ G  
Sbjct: 548 IFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIASTSGKG 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++IAN   GK      +++  K +       +  V    + +I   +    + +
Sbjct: 608 FVIPAEDLIANKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFESFAVLKK 665

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLV 740
           GKG  +    K   +  +  FK  + LT   SAG+ + R +N      +  K  G G L+
Sbjct: 666 GKGKAIIKLDKKDELKFIELFKPEQELTL--SAGKRFIRIDNKNFETYYTDKPSGGGVLL 723

Query: 741 PKGFPRSGK 749
           P+GF +  K
Sbjct: 724 PQGFRKITK 732


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/618 (39%), Positives = 364/618 (58%), Gaps = 36/618 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 10  NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE R
Sbjct: 70  ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 MAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR
Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++  
Sbjct: 249 ATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR
Sbjct: 309 LRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL
Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +      
Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544
            RR     + S  D     + +I  E + + ++ +G+I+ + ++           +  + 
Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEA 589
            KE D +   +H  T + +L  ++ G+AY L     P     + RG           GE+
Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599

Query: 590 IQLLIDLNHNQDIVTAFV 607
           +  +IDL    + V  F+
Sbjct: 600 VTTMIDLERVHEDVNLFM 617


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/568 (40%), Positives = 359/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++   
Sbjct: 248 EIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANAKVVLNNLYKHTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL IA  ++DE+I +IR     +     +++RFSL+E Q  AIL+
Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++  +L   ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT    VS A +    + +I +E + + ++++G+I        RS K     +  +H 
Sbjct: 483 -RRTEI--VSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D +L  +  GK Y
Sbjct: 540 AEDDFVEHLLITSTHDTVLFFTNKGKVY 567


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/757 (35%), Positives = 432/757 (57%), Gaps = 36/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     FKK
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++D VDF+  ++    EP V P+KFPNLL NG SGIAVGMAT+IP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A   L+D+PE + E+L+++I GPDFPTG  ++   E + + Y+ GRG   +RA
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINP-EELPKIYKKGRGSVTIRA 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +EEV R    IV+TE+PYQV K+ LI+KIAEL+  K+I  + DIRDES  E +R+V+
Sbjct: 241 KHTIEEV-RKRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVI 299

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P +++  ++ L+ ++T F  NM  L  G  P+++ L   L+E++  RREV+ 
Sbjct: 300 ELK-RDATPQVVLNRLYKLTPLQTNFNFNMIALVNGE-PKLLNLKRYLEEFIGFRREVIL 357

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDA 430
           RR+++ ++  + R+ IL+GL  A  NID ++ +++    P+  +     +F L+E Q  A
Sbjct: 358 RRTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKA 417

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I  E   L  E      ++ S ++Q   I  E+ ++ E F    
Sbjct: 418 ILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGD-- 475

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
              +RRT    VS+  +  + ++MIE E + + ++++G++        R+       +  
Sbjct: 476 ---QRRTKI--VSKESEIDI-ESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +  +EGD +K  + A + D +L+ +  GK Y L A  +  +     G +I+  +      
Sbjct: 530 IKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGN 589

Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +IV+  +    +     +  V+ +G        E       G   + +   +++  V  V
Sbjct: 590 EIVSRIIPVKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLV 649

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR--LQSYKDGGISDVICFKICEGLTWI 712
           +  D++ ++ +N + + F +  + +M R  +GVR  L    D  ++  +       L  +
Sbjct: 650 SDKDNIILISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIV 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              G  Y +        L +RGG G +  K   ++GK
Sbjct: 710 TEKG--YGKRVEIEEFHLQRRGGKGLIAAKLSEKTGK 744



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 524 ISNRGWIR--SLKS----HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++ RG+++   LK      S  ++A++ + GD L         D I+L+S +G+A   P 
Sbjct: 610 VTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPV 669

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTR 636
            ++     +   ++ ++ L+ +  +V A V +   + LL+V+ KG    VE  E     R
Sbjct: 670 ADVRQMGRNARGVRGIL-LDPDDSVVAAAVVEPEDRFLLIVTEKGYGKRVEIEEFHLQRR 728

Query: 637 KGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
            GK  +     EK   V   T     + + +V +  K++      IP   R  +GVR+Q
Sbjct: 729 GGKGLIAAKLSEKTGKVADATTLKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRIQ 787


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 298/796 (37%), Positives = 444/796 (55%), Gaps = 83/796 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KKSAR+V
Sbjct: 11  VNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L  GQGNFG+IDGDS AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRYTEVRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF D Y+  ++EP V PSKFPNLL NG++GIAVGMAT+IP HN++E+
Sbjct: 131 AAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID+PEISIE L+E++ GPDFPT GII    E + E+YR GRG   +RAR  VE
Sbjct: 191 INACVALIDDPEISIEGLMEHVPGPDFPTAGII-NGVEGVREAYRTGRGRVLIRARSHVE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +  G    IVVTE+PYQV K+RL EKIAEL+  KRI  + ++RDES +D   ++    R
Sbjct: 250 PLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++M + M+  F +N+  L  G+ P+V+ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEMAEVVLNHLYMHTQMQNVFGINIVALVDGQ-PKVLDLRQVLESFLRHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL IA  NID +I +IR    P   K  +++R               
Sbjct: 369 DLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSDMLDRAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+E Q  AIL+LRL  L  LE+ +I  E   LL   E +
Sbjct: 429 ASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELLDLIEDL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L SG++   +I  E+  V E F        RR+   E  R    TL+  +I +E + 
Sbjct: 489 LDILGSGERLQQEIRNELLAVAEQFGDE-----RRSEIRE--RQANLTLED-LIGEEDVV 540

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ +      +A  FKE D +   L A+T D +L  S+ G   
Sbjct: 541 VTLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVY 600

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFI 625
             K Y LP G+  S    G+ I  L+ L  ++    I+    YD    + +V+++G    
Sbjct: 601 WLKVYELPQGSRAS---RGKPIVNLLPLEADERINAILPVREYDPDHYVFMVTARGT--- 654

Query: 626 VEESEIIANTRKGKT-FLKVSSEEKMKLV-VKVTGDH--VAVVGENRKLLIFSIDQIPEM 681
           V+++ +   +R+  T  + V   +   LV V +T     V +V    K + FS + +  M
Sbjct: 655 VKKTPLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPM 714

Query: 682 SRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            R     +GVR++S  D  +  +    + EG   + +      R+  D    + +RGG G
Sbjct: 715 GRTACGVRGVRMES--DHRV--IALLNVAEGAALLATENGYGKRTRFDEF-PVHRRGGQG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G  + +
Sbjct: 770 VIGIQTEGRNGPLVGA 785


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 271/765 (35%), Positives = 434/765 (56%), Gaps = 39/765 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +  + ++  ++  Y+ YA+S I  RA+PD RDG KPVHRRI++AM E G+ +  
Sbjct: 24  TDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGMTYDK 83

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG+IDGDSAAA R
Sbjct: 84  AYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMR 143

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+RM +++  +L  +D++ V +R  Y+    EP V P++ PNLL NG++GIAVGMAT+
Sbjct: 144 YTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGIAVGMATN 203

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN+ E+ +A L LI++PE  I  L+E + GPDFPTGG+I+   + I  +Y  GRG  
Sbjct: 204 MAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVIL-GHQGIKSAYETGRGPI 262

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +EE+      IVV+E+PYQV KSRLIE IA L+  K+I  + D+RDES  D  
Sbjct: 263 KIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDESDRDGI 322

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V     R+ +P++++  ++  + M+T F + +N+  +  +P+ + L  +L+ +L HR +
Sbjct: 323 RVSIELTRNTNPEVILNQLYKHTQMQTTFGI-INLALVDNIPRELTLKELLQIYLEHRID 381

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ +RS F M+  D +  ILKGL+IA  +IDE+IA+IR     D+ K  +++RF L E Q
Sbjct: 382 VILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTRFGLDEVQ 441

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I+ E   L+   E +  ++ S +++++ I  E+  ++E F+
Sbjct: 442 AKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDERKYSIIKEELHAIRERFA 501

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
                 +RRT   E++ +      + +I  E + V I+N G+I+ +   +          
Sbjct: 502 D-----KRRT---EITGSHVEFEDEDLIPVEEVIVTITNSGYIKRMPVDTYSQQHRGGKG 553

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
           +  +  KE D ++    + T D ++  +  G     K Y LP G   S +  G+A+  L+
Sbjct: 554 VIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEG---SRQSKGKAVVNLL 610

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM 650
           DL  N+ +   +T   ++    L + +  G       S+  +N RK G   LK+   +++
Sbjct: 611 DLAENESVTATITVKEFEEDKFLFMATRMGTVKKTPLSD-FSNVRKAGIIALKLDEGDEL 669

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICE 707
             V    G   + +V  + K + F    +  M R  +GVR ++   D  +  +    +  
Sbjct: 670 VNVALTDGSKEIMMVSRHGKAIRFCERDVRPMGRTARGVRGMRLTGDDIVVSLDIVDLST 729

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            L  I   G     + ++  G   KRGG G +      R+G  ++
Sbjct: 730 KLLTITENGYGKRTTFDEYRGM--KRGGQGVITIVTSLRNGPVIN 772


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/602 (39%), Positives = 382/602 (63%), Gaps = 32/602 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+  G+A+KKSARIV
Sbjct: 6   VSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSARIV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY++LVR+AQPF  R PLI GQGNFG+IDGD+AAA RYTEAR+T++
Sbjct: 66  GDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARLTKI 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 126 AEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNLEEL 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +IDN + ++E +L+++ GPDFPTGG I   +  I+E+Y+ GRG  ++RA+  +E
Sbjct: 186 IDALIYMIDNKDATLEDILQFVKGPDFPTGGTIF-GKSGIIEAYKTGRGSIKIRAKHHIE 244

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
             G     IV+ E+P+QV K++LIEKI++L+  K +  + ++RDES  E +R+V+  K  
Sbjct: 245 HKG-NKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIELKKD 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++  ++++ +++  + M+  F +NM +    + P++  L  +L  ++ HR+ V+ RR+ +
Sbjct: 304 AM-SEIILNNLYKHTQMQVSFGINM-LGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTIY 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            ++   +R  IL+GLLIA  NIDE++ II+  +  K     +++RF LT+ Q  AIL++R
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  ++++E   L+ + E ++S+L         I  E+ E+K+ +         
Sbjct: 422 LARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTP------ 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKE 547
                 +     A   + +I  E + V I++RG+++ +   + +          AL   E
Sbjct: 476 --RLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++    A++ D +++++  G     K Y +P G+  S    G+AI  LI+L+ ++ I
Sbjct: 534 DDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTS---KGKAIVNLINLDKDEKI 590

Query: 603 VT 604
            T
Sbjct: 591 QT 592


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/591 (38%), Positives = 372/591 (62%), Gaps = 25/591 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ F   +KKSARIVGEV+GK
Sbjct: 13  MKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKSARIVGEVLGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RYPLISG GNFG+IDGDSAAA RYTEARM +++  +L+
Sbjct: 73  YHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEARMAKISNELLE 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN+ E+ +  LA
Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGEVVDGTLA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNPE++   L+EYI GPDFPTGGII +  + I ++Y  GRG  RVR +  +EE+  G 
Sbjct: 193 LIDNPELTPLDLMEYIKGPDFPTGGII-DGDKGIKDAYMTGRGKVRVRGKIEIEELKNGK 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I++ EIPYQ+ K+ LIEKIAEL+  K+I  + D+RDES  D +R+V+  K +  +P+L
Sbjct: 252 INIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIELK-KGEEPEL 310

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  +D+++ F + M  L +   P+V+ L  I++E++ HR EV+ RR+ F +   +
Sbjct: 311 ILNKLYKYTDLQSTFGIIMLAL-VNNTPRVLNLKQIIEEYIKHRFEVITRRTQFNLDKAE 369

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  IL+G  IA  NID II ++R   + ++ +  +V ++  T+ Q  AIL+++L+ L  
Sbjct: 370 KRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAILDMKLQRLTG 429

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++++E   +     ++  +L +  + +  +  E++E+K+ +        RRT    
Sbjct: 430 LERDKVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDD-----RRTV--- 481

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKI 553
           + +  K    + +I+ E + +  +N+G+++ +        K     +++ +  E D ++ 
Sbjct: 482 IEKERKEINPEDLIKDEEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQNTVEDDFVEN 541

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
              A   D +++ +  G+ Y +    +   S +  G  I  +I+L  ++ I
Sbjct: 542 IESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRGRLIGNIINLKTDEKI 592


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/569 (39%), Positives = 365/569 (64%), Gaps = 22/569 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+    A+KKSA
Sbjct: 10  IREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 70  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMAT+IP H +
Sbjct: 130 SKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG   +RA+ 
Sbjct: 190 GEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 249 EIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H++ V+ RR+
Sbjct: 309 RRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYLEHQQVVIRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E Q  AIL+
Sbjct: 368 AYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 428 MRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFND----- 482

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
           +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +          +  + 
Sbjct: 483 KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             + D ++  L   T D IL  +  GK Y
Sbjct: 540 TNDDDFVEHLLTTSTHDHILFFTNKGKVY 568


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 388/653 (59%), Gaps = 31/653 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+
Sbjct: 78  YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+ +  L 
Sbjct: 138 DINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNLTEVIDGVLN 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  ++RAR  +EE G G 
Sbjct: 198 LSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    VR+V+  + +  + +
Sbjct: 257 QRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDIR-KDANAN 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++ L+ ++T F  NM  L  GR P+++ L   L ++L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKLTPLQTSFGANMIALVDGR-PKLINLKEALVQYLEHQKVVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGIDNIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T    + 
Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIAVND 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                 + S+GN  I      I        F  ++   K+ +  K   + +AV
Sbjct: 608 ------LESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAV 654


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVK+ 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKDR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                LP  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/569 (39%), Positives = 365/569 (64%), Gaps = 22/569 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+    A+KKSA
Sbjct: 10  IREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 70  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMAT+IP H +
Sbjct: 130 SKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG   +RA+ 
Sbjct: 190 GEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 249 EIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H++ V+ RR+
Sbjct: 309 RRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYLEHQQVVIRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E Q  AIL+
Sbjct: 368 AYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 428 MRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFND----- 482

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
           +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +          +  + 
Sbjct: 483 KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             + D ++  L   T D IL  +  GK Y
Sbjct: 540 TNDDDFVEHLLTTSTHDHILFFTNKGKVY 568


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 388/653 (59%), Gaps = 31/653 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+
Sbjct: 78  YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+ +  L 
Sbjct: 138 DINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNLTEVIDGVLN 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  ++RAR  +EE G G 
Sbjct: 198 LSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    VR+V+  + +  + +
Sbjct: 257 QRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDIR-KDANAN 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++ L+ ++T F  NM  L  GR P+++ L   L ++L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKLTPLQTSFGANMIALVDGR-PKLINLKEALVQYLEHQKVVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGIDNIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T    + 
Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIAVND 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                 + S+GN  I      I        F  ++   K+ +  K   + +AV
Sbjct: 608 ------LESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAV 654


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 415/704 (58%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR     D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/731 (35%), Positives = 415/731 (56%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +   ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    +   ++
Sbjct: 488 EKAQVLEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNGNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/692 (38%), Positives = 408/692 (58%), Gaps = 32/692 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KSA
Sbjct: 7   VLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEARM
Sbjct: 67  HIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L+ +D++ VDF   Y+    EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 127 AKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +  + +ID+PE+ I +L++ I GPDFPTGG I+  R+ I ++Y  GRG  +VRA  
Sbjct: 187 REVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIM-GRQGIRQAYTTGRGTIKVRAVT 245

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
             E++  G   I+VTE+PYQV K++LIEKIAEL+  K+I  + D+RDES  + +RIV+  
Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  +P +++  +F  + ++  F + M  L +   P+++ L  IL  +L H+++V+ RR
Sbjct: 306 K-RDANPQVVLNQLFKHTQLQDTFGIIMLAL-VDNQPRILNLKEILFYYLEHQKDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + +   + R  IL+GL IA  N+DE+I IIR     D  +  ++SRF LTE Q  AIL
Sbjct: 364 TRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   L+ + E  +S+L   +     I  E+ E+KE +  +   
Sbjct: 424 DMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDA--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
             RRT   +++  +    ++ +I +E + + I+++G+I+ L   +          ++A+ 
Sbjct: 481 --RRT---QITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMA 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
            KE D ++      T + +L  +  GK Y L    +  +GR   G  I  L+ ++ ++ I
Sbjct: 536 TKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERI 595

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            TA +    +     L +V+  G       SE  ++ R G   L +   +K+  V   TG
Sbjct: 596 -TAIIPVKEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTG 654

Query: 659 DHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
               ++G  + + I FS   +  M R  +GV+
Sbjct: 655 QEEVIIGTKKGMAIRFSETDVRPMGRTARGVK 686


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 278/776 (35%), Positives = 432/776 (55%), Gaps = 64/776 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K+  +   ++  Y+ YA+S I  RA+PD+RDG KP+HRR+++ M+EMGL +  +FKKS
Sbjct: 14  NIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLKYNKSFKKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD ++YDSLVRLAQ F  R  L+ GQGNFG++DGD AAA RYTE R
Sbjct: 74  ARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAAAMRYTEVR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A+ +L  +D++ V F D Y+    EP V P+K PNLL NG+SGIAVGMAT+IP+HN
Sbjct: 134 LERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGMATNIPTHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A + +I NP ++ ++L+  I GPDFPTG II   R+ I + +  G+G  +V+AR
Sbjct: 194 LSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIIC-GRKGIFDYFETGKGSVKVQAR 252

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
             +EE GRG    IVVTEIPYQV K+ LIE IA L+  K++  + DIRDES    +R+V+
Sbjct: 253 AEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESDRRGMRLVI 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  D  +++  ++  + ++T F +NM  +  GR P+++P+  ++K ++ HR+EV+ 
Sbjct: 313 EVK-RDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGR-PRILPIKEVMKCYVKHRKEVVT 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
            R+ F +    +R  IL+GLLIA  N+D++I IIR    P   K  ++  F+L+E Q  A
Sbjct: 371 ARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIREFALSEPQSQA 430

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L +L    I+ E   LLA   ++  +L   ++    I  E++ +K+      
Sbjct: 431 ILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDPQKVLAIIVDELKGLKK------ 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSA 542
           D G  R T    +     T++  +IE+E + + +SN G+         R+       +  
Sbjct: 485 DYGTERKTEISNTELSDMTMED-LIEEEDVVITLSNDGYAKRIPLDTYRTQNRGGKGVIG 543

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
              KE D ++      T   IL+ +T G     +AY +P GN LS    G+AI  L+ ++
Sbjct: 544 GKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLS---KGKAIVNLLQIS 600

Query: 598 HNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM 650
           + + I +A         +S    L + ++       E    AN RK G   + +   + +
Sbjct: 601 NEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSGIIAIGLEDGDVL 660

Query: 651 KLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRL----------QSYKDG 695
             V    G    ++   + K + F  +QI  M R     +G+RL           + KD 
Sbjct: 661 TSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMGRQAKGVRGIRLGKDDIVVGMEHALKDA 720

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DV+   +CE      +    Y R +N        RGG G++  K   R+GK +
Sbjct: 721 PGPDVLS--VCENGYGKRTEFTEY-RKQN--------RGGSGTITIKTTERNGKVV 765


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/632 (38%), Positives = 384/632 (60%), Gaps = 29/632 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +++L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  L L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLIL-GKSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-- 306
             ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL   KRI  + D+RDE++  
Sbjct: 241 SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             VR+V+  + +  + ++++ +++  + ++T F +NM  L  GR P+++ L   L E+L 
Sbjct: 301 TGVRVVIDVR-KDANANVILNNLYKHTPLQTSFGVNMIALVNGR-PKLINLKEALVEYLE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423
           H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+IIR  D  K  M +   RF L
Sbjct: 359 HQKTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKL 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L  LE  +I++E + LL+   +++ +L + +     +  E+ E+K
Sbjct: 419 SERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIK 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           E F      G  R T  ++   D     + +I +E I + +S+  +I+ L   +      
Sbjct: 479 ERF------GDERRTEIQLGGLDHLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNR 531

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
               +  ++  E D +   +   T D +L  +  G+ Y L    +  LS +  G  +   
Sbjct: 532 GGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINA 591

Query: 594 IDLNHNQDIVTAF----VYDSTCKLLVVSSKG 621
           I+L +++ I T      + D    L+  + KG
Sbjct: 592 IELENDEVISTMIAVRDLEDENSFLVFATKKG 623


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/719 (36%), Positives = 424/719 (58%), Gaps = 44/719 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT   + +K  ++   +++ +++YA+S I  RA+PD+RDG KPVHRRI++AM+++G+   
Sbjct: 4   NTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RY LI G GNFG+IDGD AAA 
Sbjct: 64  KPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM++++  +++ ++++ VDF D Y+ E+ EPVV PS+FPN+L NG +GIAVGMAT
Sbjct: 124 RYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRG 248
           +IP HN+ E+ +A +ALIDNP+I+I++L+E YI GPDFPTG +++  R  I  ++  GRG
Sbjct: 184 NIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLL-GRSGIKSAFETGRG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
              +RA+  +EE+  G   I+++EIPYQV K+ L+EKIA L+  K I  + D+RDES  E
Sbjct: 243 SVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESNRE 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  + R +  ++++  ++ L+ +++ F +NM  L  GR P+++ L  +L  +  H
Sbjct: 303 GIRIVVELR-REVQAEVVLNQLYRLTALQSSFGVNMLALVNGR-PELLNLLQVLSHYRDH 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSL 423
           + E++ RR+ F ++  + R  IL+GL+IA  +IDE+I+IIR+  K  P  ++R    F L
Sbjct: 361 QIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSS-KDDPEAITRLNEAFDL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q  A+L+++LR L  L+  ++++E + L      +  +L +  +    I  E+ E+K
Sbjct: 420 TEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
             F        RR+   E+  AD   L + +I  E I V ++  G+I+     S +    
Sbjct: 480 TKFGDD-----RRS---EIVEADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFNTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--L 593
               +  +   + D++   +   T D +LL +  GK Y +   N+ S     + I +  L
Sbjct: 532 GGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNL 591

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L   + + T       D +     V+ +G    VE  E  +  + GK  + +  ++++
Sbjct: 592 LNLTEGETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDEL 651

Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
             V    GD+  ++ G N K + F  +++  M R              S VI F + EG
Sbjct: 652 VGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMGRTA------------SGVIGFNVDEG 698


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/569 (40%), Positives = 361/569 (63%), Gaps = 20/569 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NVK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKS
Sbjct: 8   NVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  I++ +++D +D+RD Y+  + EP+V PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LAL  +PEI+I++L++YI GPDFPT G+IV  R  I  +Y  G+G   +RA+
Sbjct: 188 LGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIV-GRSGIRRAYESGKGSITMRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 VRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L  +L H++ V+ RR
Sbjct: 307 VRKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLYYYLEHQKVVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIA+IR     D  +  ++  FSL+E Q  AIL
Sbjct: 366 TEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E   L+    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             RRT    V+   +    + +I +E I + +++ G+I        RS K     +  + 
Sbjct: 483 --RRTEI--VAGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             E D ++  L   T D IL  +  GKA+
Sbjct: 539 TNEDDFVEHLLTTSTHDTILFFTNKGKAF 567


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IRN       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 274/752 (36%), Positives = 416/752 (55%), Gaps = 67/752 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +       RR     + 
Sbjct: 419 EREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP----RRSEITIDT 474

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIA 554
           S  D     + +I  E + + ++ +G+I+ + ++           +  +  KE D +   
Sbjct: 475 SDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530

Query: 555 LHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHN 599
           +H  T + +L  ++ G+AY L     P     + RG           GE++  +IDL   
Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            + V  F+     +  VV        +EE   I   R G   + +   +++  V   TG+
Sbjct: 591 HEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDRLISVNVTTGN 641

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID- 713
              ++G    + I FS   +  M R     +G++L +       DV+   +  G+   D 
Sbjct: 642 QDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNA------GDVV---VGAGVLNTDE 692

Query: 714 SAGRSYNRSE------NDLLGW-LGKRGGVGS 738
           S  + +  SE      ND   + L KRGG GS
Sbjct: 693 SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 724


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 271/750 (36%), Positives = 431/750 (57%), Gaps = 50/750 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G     A+KKSA
Sbjct: 9   VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+RM
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H +
Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+ 
Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYETGRGSIIIRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I++ E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+   
Sbjct: 248 EIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR+
Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RFSL+E Q  AIL+
Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I++E   L    +++ ++L   ++  + I  EI E+KE F+ +    
Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIDELKAILADEEKIVDIIRTEILELKERFNDT---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
            RRT     S   +    + +I  E   V +++ G+I+ L +++          +  +  
Sbjct: 483 -RRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
            E D ++  ++  T D IL  ++ G     K Y +P          G  I  L+++   +
Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE---FGRTAKGLPIVNLLNIEKGE 596

Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653
             VTA +    +D     +  +  G   I + + +   AN R     + +S  E   L+ 
Sbjct: 597 K-VTAMIRVASFDDDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLIS 651

Query: 654 VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V++T G+   ++G    +L+ F  D I  M R   GVR    +DG   +V+  +I E   
Sbjct: 652 VRLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPGQ 709

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            +  +   G     SE D    L  RGGVG
Sbjct: 710 EILVVTEKGYGKRTSEEDY--RLQSRGGVG 737


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 266/698 (38%), Positives = 406/698 (58%), Gaps = 37/698 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG  I      I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D +RIV+  
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  +F  + ++T F +N N+  +  VP V+ +  ++K +  H+ EVL RR
Sbjct: 324 K-RDVIPEVLLNKLFKTTALQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEVLVRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R+ I++GL+IA  NIDE+I II+   ++D     +++RF LTE Q  AIL
Sbjct: 382 TKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAIL 441

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L  L   ++K E ++LL   E ++ +L +  +Q N I CE   +  +  K  D 
Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYDRQVN-IICE--NLDYLIEKFGDE 498

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
            R    +   S  D     + +I  E I V +S RG+ + L        +   V +  L 
Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
             E D ++  L A+T   +L  S  G+ Y L    +  G    + I  +  + +  ++ I
Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614

Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +T    D+     L   +SKG    A + +   I AN   GK  + +   +K+  V++  
Sbjct: 615 LTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKEGDKLFSVMQTL 671

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQ 690
           G D V +   N  ++ F+ +   EM R     KG+ L+
Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLE 709


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/579 (41%), Positives = 361/579 (62%), Gaps = 32/579 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V++   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +++D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LI++PE ++E+L++ I GPDFPT G+I+ + E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGT-EGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES    +R+V+  
Sbjct: 245 HIEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374
           K  +  P  ++ +++  + M+T F +NM  L   GR P+V+ L  +L+E++ HR+EV+ R
Sbjct: 305 KQDA-QPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +     R  IL+GL IA  N+D +I  IR+    +  +  ++S FSLTE Q  AI
Sbjct: 364 RTEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +     
Sbjct: 424 LDLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDP-- 481

Query: 492 LGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
              RRT        EVS  D       +I    + + +++RG+I        R+ +    
Sbjct: 482 ---RRTRIIPDVTGEVSDED-------LIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  +  +E D ++  L  ++ D +L  +  GK Y L A
Sbjct: 532 GIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKA 570


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 278/762 (36%), Positives = 420/762 (55%), Gaps = 40/762 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +++V +   +   YL YA+S I  RA+PD RDG KPVHRRI++AM +MG+   +A+KKS
Sbjct: 5   TIQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++ R+AQ F  RYPLI GQGNFG+IDGD+ AA RYTEAR
Sbjct: 65  ARIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +AE +L  +D+D VDF D ++    EPVV P++ PNLL NG+SGIAVGMATSIP HN
Sbjct: 125 LNPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHN 184

Query: 196 VQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +A   LI+N     +I+ E L+  I GPDFPTGGIIV  RE I+  Y  GR    
Sbjct: 185 LREVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIV-GREGILHGYSTGRSRLT 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR    +EE   G + I++TEIPYQV K+ LIE+IAEL+   ++  + D+RDES      
Sbjct: 244 VRGVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMS 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R   P  ++  ++  + +++ F +NM  L +   P+++PL   L+ ++ HR+EV
Sbjct: 304 IVIELRRGAQPRQVLNQLYKYTPLQSTFSVNMLAL-VDNEPRLLPLKRALQVFIQHRQEV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           L RR+ F +     R  IL+GLLIA  N+D +IAIIR   + +  +  ++ RF LTE Q 
Sbjct: 363 LTRRTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIERFKLTEVQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++LR L  LE  +I+ E   +      ++ LL + ++    I  +++E+ E +  
Sbjct: 423 QAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLLANPRKILALIQTDMKELAEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541
           +     RRT     ++ D +  ++ ++  E + + ++ RG+I+ + + +           
Sbjct: 483 N-----RRTRIAAEAKEDFS--EEDLVADEAVLITLTARGYIKRVNASAYRTQNRGGKGV 535

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHG--EAIQLLIDLN 597
                KE D +   L A T D +L  +  GK Y   A  +  +GR      AI +L  L 
Sbjct: 536 IGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTDKGIPAINVLA-LE 594

Query: 598 HNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            N+ I  A    S       L+ +  G    V+ SE  +    G   + + + +++  V 
Sbjct: 595 ANERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVR 654

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE---GL 709
              G  HV +V E    + F+  ++  M R   GV   S ++G    V    I E   GL
Sbjct: 655 LTDGSRHVLLVTEQGYTVRFAESEVRSMGRQASGVTGISLREG--DRVASMDIVEEGGGL 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKR-GGVGSLVPKGFPRSGKF 750
             + + G    R   D     G+  GGV +L  K   ++GK 
Sbjct: 713 LLVTTKGFG-KRVRLDEFVLKGRAIGGVMALDHKAIAKTGKL 753


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/705 (37%), Positives = 416/705 (59%), Gaps = 41/705 (5%)

Query: 12  LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +  R     + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  + +   P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFYYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR     +  +  ++ RF L++
Sbjct: 358 VIVIRRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFGLSQ 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA+  ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           FS       RRT   E++  + + L + +I +E + + I++ G+I+ L +++        
Sbjct: 478 FSDE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +  LS    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKM 650
           +   + I   +    +DS   L   + +G   +V+++  E   N RKG        E+  
Sbjct: 590 IEQGESINAVIPVENFDSDNFLFFATRQG---VVKKTPLEDYVNIRKGGLIAINLREDDS 646

Query: 651 KLVVKVT-GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689
            + VK+T G    ++G  + + I F    +  M R     KG+ L
Sbjct: 647 LIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKGITL 691


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 290/787 (36%), Positives = 430/787 (54%), Gaps = 72/787 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKS
Sbjct: 7   NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    +A I+NP IS E+LL  I GPDFPTGG I   RE I++ YR GRG  ++RAR
Sbjct: 187 LTEVINGIIATIENPNISFEELLALIPGPDFPTGGFIY-GREGILQGYRTGRGIVQMRAR 245

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     I+VTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++ 
Sbjct: 246 ASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  + M+T F +NM  +  GR P+V+ L   +  ++ HRRE++ R
Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGR-PRVLTLRDAIGHFIDHRREIVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           R+ F ++  + R  IL+G  IA   +D +I +IR    P                     
Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKM 424

Query: 415 ----PVMVSRFS----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               P + S++     LTE Q   ILNLRL  L  LE  +I  E D++L    ++  +L 
Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILA 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+RE+KE F        RRT    V R+ + +L+  ++E E + V +S+
Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRTEI--VDRSAEISLEDTIVE-EDVVVTVSH 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS +      + +  KE D ++    A + D +L  +  GK Y +   
Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI- 631
            +  G     G+AI  L++L  N+ I TA +    +D    +++ +  G   +V++S + 
Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQI-TAILSVKGFDDDRNIIMATRLG---VVKKSPLR 652

Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
             AN R G   + V+ ++  KL+     D    V +  +N K + F  D    M R  +G
Sbjct: 653 EYANIRSG-GIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPMGRVSRG 711

Query: 687 VRLQSYKDGGISDVICFKI----CEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVP 741
           VR  S +D  +  VI  +I      G T        +  R+E D    +  RGG G +  
Sbjct: 712 VRGMSLEDDDV--VIGMEIINPNATGSTIFTVTENGFGKRTELDEY-RVQSRGGKGIITI 768

Query: 742 KGFPRSG 748
           K   R+G
Sbjct: 769 KTTERNG 775


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 261/731 (35%), Positives = 416/731 (56%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 365/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/599 (40%), Positives = 371/599 (61%), Gaps = 23/599 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSA
Sbjct: 8   VLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD SVYD++VR+AQ F  RYPLI G GNFG++DGD+AAA RYTE RM
Sbjct: 68  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++AE +L  +D+D VDF   Y+E   EP V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 SRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + +IDNPE+S+++L+  I GPDFPTGG+I+  R+ I ++Y  GRG  ++RA+ 
Sbjct: 188 GEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLIL-GRDGIKQAYTTGRGVIKMRAQA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE++  G   IVVTEIPYQV K++L+E IA L+  K I  + D+RDES      V+   
Sbjct: 247 RVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++ D+++  ++  + ++  F + M  L  GR P+++ L  +L  +L H+++V+ RR+
Sbjct: 307 RRDVNADVILNQLYKHTQLQETFGVIMLALVDGR-PRILNLRDMLHYYLEHQKDVIIRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  ++DE+I  IR    P   +  ++++F+L+E Q  AIL+
Sbjct: 366 KFELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAKFALSEKQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  ++L   E ++++L   ++    I  E+ +VK+ F  +    
Sbjct: 426 MRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDA---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
           RR     +VS+ +     + +I  E I + I+++G++        RS +     ++ +  
Sbjct: 482 RRTVITSDVSKLE----VEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
           KE D ++    A T   IL  +  G+ Y L    L  +GR   G AI  L+ +  ++ I
Sbjct: 538 KEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKI 596


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 362/573 (63%), Gaps = 23/573 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   ++  ++ YA+S I +RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 5   LNEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNK 64

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSA +VGEVI K HPHGD ++YD++VR+AQ +  RY L+ GQGNFG+IDGD AAAYRY
Sbjct: 65  YVKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRY 124

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT VAE IL  +D++ VDF++ ++    EP V PS  PN+L NG SGIAVGMAT+I
Sbjct: 125 TEARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA++DNPEI++++L+E+I GPDFPTGG++  SR  I +++  GRG  R
Sbjct: 185 PPHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGVM--SRTGIRQAFETGRGSIR 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+   EE GRG+  IVVTEIPYQV K+ LI+  A L+ +KRI  + +IRDES      
Sbjct: 243 LRAKVRFEERGRGT-SIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMR 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++F   R   P+L++  ++  + +++ F +N N+  + R P+V+PL   L  +L HR +V
Sbjct: 302 IVFELKRGAHPELVLNQLYKYTQLQSTFSVN-NLAIVDRSPRVLPLKDALALFLDHRADV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQV 428
           + RR++F ++    R  IL+G LIA   +DE+IA+IR + D P  +  +V+ F LTE Q 
Sbjct: 361 VRRRTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAEFGLTEVQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            A+L++RL+ L  LE  +++ E   L AE  +++++L    +    I  E+REVK+ F+ 
Sbjct: 421 QAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILGDANELRKVIKRELREVKKNFAD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
           +     RRT   ++S  D    ++ +I +E + V ++  G+I        R+       +
Sbjct: 481 A-----RRT---QISDNDSDISKEDLIAEEHMVVTLTRGGYIKRTPLAAYRAQARGGRGV 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +A   KE D   + +  +T D +L  +  G+ Y
Sbjct: 533 NAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVY 565


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/568 (39%), Positives = 357/568 (62%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++   
Sbjct: 248 EIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL IA  ++DE+I +IR     +     ++ RFSL+E Q  AIL+
Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+   D  
Sbjct: 427 MRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFN---DER 483

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
           R       V + D     + +I  E I + ++++G+I        RS K     +  +H 
Sbjct: 484 RTEIVVGAVEQLD----DEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D +L  +  GK Y
Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVY 567


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/568 (40%), Positives = 358/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++   
Sbjct: 248 EIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL IA  ++DE+I +IR     +     ++ RFSL+E Q  AIL+
Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT    V  A +    + +I  E I + ++++G+I        RS K     +  +H 
Sbjct: 483 -RRTEI--VVGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D +L  +  GK Y
Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVY 567


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDVR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/679 (37%), Positives = 415/679 (61%), Gaps = 32/679 (4%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S++NT  EE  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ +
Sbjct: 1   MSDNNTNNEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDGD
Sbjct: 61  GLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPN+L NG+ GIA
Sbjct: 121 PAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +A IDNP I+ E L++YI GPDFPTGG+IV  ++ I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIV-GKDGIRETYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VRA+  +EE   G   IV+TE+PY V KS+L+EKIAEL+  K I  + D+RDE
Sbjct: 240 TGRGKIIVRAKAEIEE-HNGRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDE 298

Query: 305 SAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  + +RIV+  K R ++P +++  ++M + M+  F   M  L  G  P+++ L+ I+++
Sbjct: 299 SDRNGMRIVIELK-RDVNPKVVLNKLYMHTQMQQTFGAIMLALVDG-APKILSLNQIIEK 356

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVS 419
           ++ H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+  K +P+    ++ 
Sbjct: 357 YVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSS-KTEPIAKKNLMD 415

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L++ Q  AI+++RL  L  LE  +++ EL+ L  + E++  +L   K+    I  E+
Sbjct: 416 KFGLSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGILADEKKVLEIIKKEL 475

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
           +E+K+ FS       R+T    V++ D+  ++  +++ E   V +++ G+I        +
Sbjct: 476 KEIKDKFS-----SERKTHI--VAKVDEMDIED-LVQLEDAVVTMTHFGYIKRMPLDAYK 527

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589
           S K     +S +  +E D ++      T DR+L  +  GK Y+L   ++  SGR   G A
Sbjct: 528 SQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTA 587

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646
           I  LI ++ ++ +        + K   V       I++++EI      +K G T +K+  
Sbjct: 588 IVNLIQIDQDEKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDD 647

Query: 647 EEKMKLVVKVTGDHVAVVG 665
            +++  V+   GD   ++G
Sbjct: 648 GDELINVMLTNGDREIIIG 666


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/689 (38%), Positives = 413/689 (59%), Gaps = 40/689 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSARIVGEVIGK
Sbjct: 19  MRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSSDKPYKKSARIVGEVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR++++A  +L+
Sbjct: 79  YHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEMLR 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGMAT+IP HN+ E+ +   A
Sbjct: 139 DLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMATNIPPHNLTEVIDGIQA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPEI+  +L++Y+ GPDFPT GI++     I ++Y  GRG   +RAR  +EE G  +
Sbjct: 199 LIRNPEITPVELIDYVKGPDFPTAGIVM-GLSGIRQAYLTGRGTVTMRARATIEENGNKA 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+    R + P ++
Sbjct: 258 R-IIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIELRRDVTPSVV 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + M++ F +NM  L  G  P+ + +  +L  +L H+ EV+ RR+ + ++  + 
Sbjct: 317 LNNLYKQTQMQSNFGINMLALVNGE-PKTLNIREMLYYYLQHQIEVIRRRTEYDLKKAEA 375

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  ++DE+IA+IR     D  +  ++ RF+L+  Q  AIL++RL+ L  L
Sbjct: 376 RAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSYEQAQAILDMRLQRLTGL 435

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I++E   L+ +  +  ++L   +   N I+ E+ E+KE F        RRT   E+
Sbjct: 436 ERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKERFGDE-----RRT---EI 487

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           + +D+  L + +I +E + + I++ G+I        RS K     +  +  KE D ++  
Sbjct: 488 TVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHL 547

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYD 609
             ++T   +L  +  GK Y L A  +  LS    G  I  LI +   + I   +    +D
Sbjct: 548 FVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPVESFD 607

Query: 610 STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVG 665
           S   L   + +G   IV+++ +    N RK    + +S  E  +L+ VK+T G+   V+G
Sbjct: 608 SESYLFFATRQG---IVKKTPLDDYMNIRK-VGLIAISIREDDELIGVKLTDGNQEIVMG 663

Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRL 689
             + + I FS   +  M R     KG++L
Sbjct: 664 TAQGMSIRFSEQDVRSMGRSATGVKGIQL 692


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 273/752 (36%), Positives = 417/752 (55%), Gaps = 67/752 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++ + +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+   ++  +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L +  +Q   I  E+ ++K+ +       RR     + 
Sbjct: 419 EREKIEEEYKELLALIEDLKAILANEARQRQIIKDELDDMKKKYGDP----RRSEITIDT 474

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIA 554
           S  D     + +I  E + + ++ +G+I+ + ++           +  +  KE D +   
Sbjct: 475 SDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530

Query: 555 LHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHN 599
           +H  T + +L  ++ G+AY L     P     + RG           GE++  +IDL   
Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            + V  F+     +  VV        +EE   I   R G   + +   +++  V   TG+
Sbjct: 591 HEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDRLISVNVTTGN 641

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID- 713
              ++G    + I FS   +  M R     +G++L +       DV+   +  G+   D 
Sbjct: 642 QDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNA------GDVV---VGAGVLNTDE 692

Query: 714 SAGRSYNRSE------NDLLGW-LGKRGGVGS 738
           S  + +  SE      ND   + L KRGG GS
Sbjct: 693 SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 724


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                +RRT                  E+  IT  ++N G+I+ L ++           +
Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 275/725 (37%), Positives = 414/725 (57%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALI+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVVDGCLALINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V+EI+        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVREIYGDE-----RRT---EITAAVHDIDMEELIAQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +SN G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I     V + + +  +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V    GD  + +  ++ K++ F+ D++  M R 
Sbjct: 657 TSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 ASGVR 721


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 265/698 (37%), Positives = 406/698 (58%), Gaps = 37/698 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG  I      I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D +RIV+  
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  +F  + ++T F +N N+  +  VP V+ +  ++K +  H+ EVL RR
Sbjct: 324 K-RDVIPEVLLNKLFKTTALQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEVLVRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R+ I++GL+IA  NIDE+I II+   ++D     +++RF LTE Q  AIL
Sbjct: 382 TKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAIL 441

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L  L   ++K E ++LL   + ++ +L +  +Q N I CE   +  +  K  D 
Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYDRQVN-IICE--NLDYLIEKFGDE 498

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
            R    +   S  D     + +I  E I V +S RG+ + L        +   V +  L 
Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
             E D ++  L A+T   +L  S  G+ Y L    +  G    + I  +  + +  ++ I
Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614

Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +T    D+     L   +SKG    A + +   I AN   GK  + +   +K+  V++  
Sbjct: 615 LTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKEGDKLFSVMQTL 671

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQ 690
           G D V +   N  ++ F+ +   EM R     KG+ L+
Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLE 709


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                +RRT                  E+  IT  ++N G+I+ L ++           +
Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDEII II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           I+L   ++I+T
Sbjct: 592 INLGDQEEILT 602


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/648 (38%), Positives = 392/648 (60%), Gaps = 35/648 (5%)

Query: 12  LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +  R     + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  + +   P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFHYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR     +  +  ++ RF L+ 
Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           F+       RRT   E++  + + L + +I +E + + I++ G+I+ L +++        
Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +  LS    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638
           +   + I   +    +DS   L   + +G   +V+++  E   N RKG
Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQG---VVKKTPLEDYVNIRKG 634


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/702 (36%), Positives = 414/702 (58%), Gaps = 38/702 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+    A+K
Sbjct: 6   QSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  R  L+ G GNFG++DGDSAAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LAL  NPEI+IE+L+E+I GPDFPTG  IV     I  +Y  G+G   +R
Sbjct: 186 HNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIV-GISGIRRAYETGKGSIMIR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +E+     W I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 245 SNARIEDHNGKPW-IIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ ++L+ +++  + ++T F +N   L  GR PQV+ L   L  +L H+R V+ 
Sbjct: 304 IELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGR-PQVLNLKETLVHYLDHQRVVIR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL +A  ++DE+IA+IR     D  +  ++ +F L+ +Q  A
Sbjct: 363 RRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQFDLSHDQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E + L+A   ++ ++L   ++    I  E+ E+++ F    
Sbjct: 423 ILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREELLEIRDRFG--- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
           D  R   TF E S  D     + +I ++ + + +S+ G+I        RS K     +  
Sbjct: 480 DDRRTTITFGEDSMED-----EDLIPRQNVVITVSHHGYIKRIPVSTYRSQKRGGRGVQG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +   + D ++     ++ D +L  +  GK Y +    +   +   + I ++  L   +D 
Sbjct: 535 MGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIINLLQIEKDE 594

Query: 603 VTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEEKMKLVV 654
             + V     +D+   L+ ++  G   + + +E+ A  N RKG  F +K+   +++  V 
Sbjct: 595 YISTVIPISEFDANHSLIFMTKYG---VSKRTELDAFKNIRKGGLFAIKLREGDELHGVR 651

Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691
              G    VVG  + + I FS   +  M R     KG+RLQS
Sbjct: 652 LTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGVKGLRLQS 693


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 481 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 532

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 533 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 593 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 641

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 642 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 685


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/648 (38%), Positives = 392/648 (60%), Gaps = 35/648 (5%)

Query: 12  LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +  R     + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  + +   P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFHYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR     +  +  ++ RF L+ 
Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           F+       RRT   E++  + + L + +I +E + + I++ G+I+ L +++        
Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +  LS    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638
           +   + I   +    +DS   L   + +G   +V+++  E   N RKG
Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQG---VVKKTPLEDYVNIRKG 634


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                +RRT                  E+  IT  ++N G+I+ L ++           +
Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           I+L   ++I+T
Sbjct: 592 INLGDQEEILT 602


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/578 (40%), Positives = 369/578 (63%), Gaps = 24/578 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG+IDGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M++++  +L+ + ++ +D++D Y+  + EPVV P++FPNLL NG +GIAVGMA
Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NPEI+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
              +RA+  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + D+RDES   
Sbjct: 241 SITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  + R  + ++L+ +++  + ++T F +NM  L  G  P+V+ L   L  +L H
Sbjct: 301 GLRIVMEVR-RDANANVLLNNLYKHTALQTSFGINMLSLVDGE-PKVLNLKQTLYYYLEH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           ++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF+L+
Sbjct: 359 QKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFALS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RL+ L  LE  +I+ E   LL    ++ ++L   ++    I  E+ EVKE
Sbjct: 419 EKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEVKE 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F+       RRT   E++     +++ + +I ++ I + +++ G+I+ L + +      
Sbjct: 479 RFNDE-----RRT---EITIGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNR 530

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
               +  +   + D ++  L   T D IL  +  GK Y
Sbjct: 531 GGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVY 568


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           I+L   ++I+T
Sbjct: 592 INLGDQEEILT 602


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/694 (37%), Positives = 416/694 (59%), Gaps = 32/694 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M ++GLD     +K
Sbjct: 5   QNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPTRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE 
Sbjct: 65  SARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A+ +L+ + +D VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 125 RMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +A + NPEISI+ L+++I GPDFPTG +I+  +  I E+Y  GRG  + RA
Sbjct: 185 NLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALIL-GKTGIKEAYTTGRGKIKQRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
              +E   +    I+++EIPYQV K+RLIEKIA+L+  KRI  + DIRDES  + +RIV+
Sbjct: 244 VCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  + ++++ +++  + +E  F + +N+  +G  P+++ L  +++ ++ H++EV+ 
Sbjct: 304 EIK-RDSNANIVLNNLYKYTQLENTFGI-INLALVGGEPKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR   + D+ K +   R+ L++ Q  A
Sbjct: 362 RRTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDRYKLSDAQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L    E + S+LNS +   N I  EI E+KE +S   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENKELADTIEYLLSILNSEENLINLIIDEITEIKEKYSDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541
               RRT        D+  +    +IE+E I + ++  G+I+ L   ++ V       ++
Sbjct: 481 ----RRTKIV----PDEGEIDITELIEEEDILINLTKDGYIKRLPIDTYKVQNRGGKGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
           A + KEGD +K  +  +T + +L  ++ GK Y+L A  +  G     G+AI  +++L   
Sbjct: 533 AGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSRTSRGQAIINILNLETG 592

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656
           + I          K   LV+ ++       ++E   N R+ G   + +   +K+  V ++
Sbjct: 593 EKITEMMTLSELSKNSQLVLQTQQGQIKKTDAENFTNIRRNGIIAISLKDWDKLISVRQI 652

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688
             D   ++     + I F+   +  M R   GVR
Sbjct: 653 DKDEELIISTQNGMTIQFNTKDVRSMGRSAVGVR 686


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           I+L   ++I+T
Sbjct: 592 INLGDQEEILT 602


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/711 (37%), Positives = 427/711 (60%), Gaps = 37/711 (5%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN +N     E  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ 
Sbjct: 3   DNTNNE----ELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNG 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDG
Sbjct: 59  LGLTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GI
Sbjct: 119 DPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +A IDNP I+ ++L+ YI GPDFPTGG+IV  ++ I E+Y
Sbjct: 179 AVGMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIV-GKDGIRETY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VRA+  +EE   G   IVVTE+PY V KS+L+EKIAEL+  K I  + D+RD
Sbjct: 238 ETGRGKIIVRAKAEIEE-HNGRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRD 296

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  + +RIV+  K R ++P +++  ++M + M+  F   M  L  G  P+++ L+ I++
Sbjct: 297 ESDRNGMRIVIELK-RDVNPKVVLNKLYMHTQMQQTFGAIMLALVDG-APKILSLNQIIE 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MV 418
           +++ H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+  K +P+    ++
Sbjct: 355 KYVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSS-KTEPIAKNNLM 413

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +F L++ Q  AI+++RL  L  LE  +I+ EL++L  + +++ S+L+  K+  + I  E
Sbjct: 414 DKFGLSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSILSDEKKVLDIIKKE 473

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----- 533
           +++VK+ +S       RRT    V++ D+  ++  +++ E   V +++ G+I+ +     
Sbjct: 474 LKDVKDKYSSG-----RRTHI--VAKEDEVDIED-LVQLEDAVVTMTHFGYIKRMPLDAY 525

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGE 588
              K     +S +  +E D ++      T DR+L  +  GK Y+L   ++  SGR   G 
Sbjct: 526 KAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGT 585

Query: 589 AIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVS 645
           AI  LI ++ ++ +  V         K +V+ +K       E +     +K G T +K+ 
Sbjct: 586 AIINLIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLD 645

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
             +++  V+   G+   ++G      I F  D +  M R  +GV   + +D
Sbjct: 646 DGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRD 696


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
               G +R T   V        +  + E+E + + ++N G+I+ L ++           +
Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/644 (37%), Positives = 396/644 (61%), Gaps = 35/644 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  +++   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      K
Sbjct: 5   KDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +++ ++++ VD+R  ++E   EP V PS+FPNLL NG++GIAVGMAT+IP 
Sbjct: 125 ARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ ++ + LID+ E  IE  +E+I GPDFPTGGII+ + E I ++Y  GRG  +VR
Sbjct: 185 HNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGT-EGIKDAYTTGRGKIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +EE+ +G   I+V EIPYQV K+RLIEKIAEL+  K+I  + D+RDES  E +RIV
Sbjct: 244 AKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++  ++  + +E  F + M  +  G+ P+V+ L  +L  +L H+++++
Sbjct: 304 IELK-RDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQ-PKVLNLKEVLTHYLNHQKDII 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  N+DE+I +IR  D     K  ++ +FSL+E Q  
Sbjct: 362 VRRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEKFSLSEKQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +++ E   L+     +  +L + +   + I  E+ E++E ++  
Sbjct: 422 AILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANERLLLDIIKEELLEIREKYAD- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWI--------RSLKSHSVDL 540
               +RRT        D  ++    ++++E + + +++ G+I        RS K     +
Sbjct: 481 ----KRRTEIA----IDPGSINMIDLVDEEDVVITLTHFGYIKRLPIDTYRSQKRGGKGI 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
           S +  ++ D ++      T   +L  +  GK Y L    +  GR    G AI  L+ L+ 
Sbjct: 533 SGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQAKGTAIVNLLQLSA 592

Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIA--NTRK 637
           N+ I      D  C    L++ + KG   I++++E+    NTRK
Sbjct: 593 NEKIAAVIPVDRDCNEQYLVMATQKG---IIKKTELCQFDNTRK 633


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/727 (37%), Positives = 405/727 (55%), Gaps = 62/727 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKS
Sbjct: 7   NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A I NP IS E+LL  + GPDFPTGG I   RE I++ YR GRG  ++RAR
Sbjct: 187 LSEVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIY-GREGILQGYRTGRGIVQMRAR 245

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++ 
Sbjct: 246 ASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  + M+T F +NM  +  GR P+V+ L   +  ++ HRRE++ R
Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGR-PKVLTLQDAIGHFIDHRREIVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           R+ F ++  + R  IL+G  IA   +D +I +IR    P                     
Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKM 424

Query: 415 ----PVMVSRFS----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               P + S++     LTE Q   ILNLRL  L  LE  +I  E +++L    ++  +L 
Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILA 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+RE+KE F        RRT    V R+ + +L+  ++E E + V +S+
Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRTEI--VDRSAEISLEDTIVE-EDVVVTVSH 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS +      + +  KE D ++    A + D +L  +  GK Y +   
Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-- 631
            +  G     G+AI  L++L  N+ I        +D    +L+ +  G   +V++S +  
Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDERNILMATRLG---VVKKSPLRE 653

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
            AN R G   + V+ +E+ KL+     D    V +   N K + F  +    M R  +GV
Sbjct: 654 YANIRSG-GIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMGRVSRGV 712

Query: 688 RLQSYKD 694
           R  + +D
Sbjct: 713 RGMTLED 719


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/711 (36%), Positives = 413/711 (58%), Gaps = 41/711 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KSA IVGEV+ +
Sbjct: 13  MRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKSAYIVGEVLAR 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+ AA RYTEAR+++ A  +L+
Sbjct: 73  YHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEARLSRYALEMLR 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN+ E+ +  LA
Sbjct: 133 DINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHNLGEVIDGLLA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++S+E+L+ Y+ GPDFPTGGII+  RE I  +Y  GRGG  VR +  +E  G  +
Sbjct: 193 LIDNPDLSLEELMRYVPGPDFPTGGIIL-GREGIRTAYATGRGGIVVRGKATIERKGNRN 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPYQV K+RL+E+IAEL+  KR+  + D+RDES      V+    R  DP ++
Sbjct: 252 -LIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVELKRDADPQVI 310

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + +E  F + M  L  G+ P+V+ L  +++ +L H++EV+ RR  + ++    
Sbjct: 311 LNRLYKHTQLEETFGVIMLALVNGQ-PEVLSLKEMMRHYLNHQKEVVVRRCQYELREAQL 369

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+E+++GL++A  NID ++ +I+   D P  K  ++S F LTE Q  AIL++RL+ L  L
Sbjct: 370 RLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLISTFGLTEKQAQAILDMRLQRLTAL 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++ +EL  L  +   ++ +L    + W  +  E++ +KE F+       RRT   + 
Sbjct: 430 EREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADP-----RRTLIVD- 483

Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
              ++ T + + +I  E + V++S++G+I        RS       ++ L  K+GD ++ 
Sbjct: 484 ---EEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTGLKLKDGDFVRH 540

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---- 607
              A+T D +L  ++ G+ + L    +      G G A+  L+ L+  +  VTA +    
Sbjct: 541 LYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQ-VTAIIPVAD 599

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGE 666
           +     +L+V+ +G    +   E+    R G   + +   +E +   +    + V +V E
Sbjct: 600 FSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAALPGPEEEVLLVTE 659

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             K + F   ++  M R  +GVR    + G   D +      GL  +D AG
Sbjct: 660 GGKAIRFRAAEVRPMGRAARGVRGMKLRPG---DRVA-----GLAVLDGAG 702


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/632 (39%), Positives = 387/632 (61%), Gaps = 40/632 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  ++ D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVTA-----FVYDSTCKLLVVSSK 620
           I+L   ++I+T      F  DS   L   S K
Sbjct: 592 INLGAQEEILTIKNSKDFTDDSYLLLTTASGK 623


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 262/692 (37%), Positives = 417/692 (60%), Gaps = 38/692 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      KKSAR+V
Sbjct: 15  ININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDKPHKKSARLV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDSAAA RYTEARM ++
Sbjct: 75  GEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMRYTEARMAKI 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            + +L  +D+D VDF   +++   EPVV P++ PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 135 TQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATNIPPHNLGEI 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LIDNP+ + ++L+  + GPDFPTGGII+  RE I  +Y+ GRG  R+RA+  +E
Sbjct: 195 IDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIM-GREGIKSAYKTGRGAIRIRAKTTIE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++    + 
Sbjct: 254 TMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQIVIELRKD 313

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P +++  +F  + ++  F + M  L  G+ P+V+ L   L  +L H+++V+ RR+ F 
Sbjct: 314 ANPQVVLNQLFKHTQLQETFGVIMLALVDGQ-PKVLNLRDALFYYLEHQKDVITRRTRFE 372

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  ++DE+I  IR     +  +  ++ +F L+E Q  AIL++RL
Sbjct: 373 LDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFGLSEKQAQAILDMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +++ E  NLL     + ++L +       I  E+  +KE ++       RR
Sbjct: 433 QKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVIKEKYNDP-----RR 487

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548
           T   E+S  D     + +I +E + + I++ G+I        R+ K     ++A+  KE 
Sbjct: 488 T---EISINDVNIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTAMGTKEE 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T   +L  +  GK Y L   N+  +GR   G AI  L+ ++ ++ I TA 
Sbjct: 545 DFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDEKI-TAV 603

Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLV-VKVT-G 658
           +    +D+   LL ++ KG   +++++ ++   +TRK    + +S +E  +L+ VK+T G
Sbjct: 604 IPVRSFDTEEYLLTITRKG---VIKKTPLVEYGSTRK-DGIIALSLDENDELIDVKLTNG 659

Query: 659 DHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688
            +  ++G    K + F+ +++  M R  +GVR
Sbjct: 660 KNEVIIGTKEGKAIRFAEEEVRSMGRAARGVR 691


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/669 (37%), Positives = 400/669 (59%), Gaps = 35/669 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++A  +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLATELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNMTEVINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++RAR  +EE G G 
Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVV+EIP+QV K+R+IEKIAEL   K++  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGVRVVIDIR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++ L+ ++T F +NM  L  GR P+++ L   L E+L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKLTPLQTSFGVNMIALINGR-PKLINLKEALVEYLEHQKVVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E Q  AIL++RLR L 
Sbjct: 375 EDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + L+A  E++ ++L   ++    +  E+ EV+E F      G  R +  
Sbjct: 435 GLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERF------GDERRSEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D+    + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDQIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T    + 
Sbjct: 548 QIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDESISTMIAVND 607

Query: 611 TCK---LLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             K    LV ++K N  +   S  ++N     R GK  +    E+++  V    G    +
Sbjct: 608 LEKEDAYLVFATK-NGIVKRSS--LSNFSHINRNGKIAINFRDEDELVAVRLTDGTKDVL 664

Query: 664 VGENRKLLI 672
           +G +   LI
Sbjct: 665 LGTSHASLI 673


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/608 (38%), Positives = 381/608 (62%), Gaps = 28/608 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V  N++ V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM +MG+     F
Sbjct: 10  VAHNLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPF 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY  ++GQGNFG++DGD AAA RYT
Sbjct: 70  RKSARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYT 129

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  +L+ ++++ VDF D ++  + EPVV PS+FP+LL NG+ GIAVGMAT+IP
Sbjct: 130 EARMSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIP 189

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A ID+P+IS++ L+ +I GPDFPT G+I+  +  I E+Y  GRG  ++
Sbjct: 190 PHNLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVIL-GKSGIREAYETGRGRIKI 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310
           R++  V+ + +G   IV++EIPY V K++LI+KIAEL+  KR+  + DIRDE+     +R
Sbjct: 249 RSKVAVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIR 308

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++  + ++  + + +N+  +   P+V+ L  IL  ++AH++E
Sbjct: 309 IVVELK-RDTNATIVLNQLYKHTQLQDTYGV-INLALVDGQPKVLSLKQILHYYVAHQKE 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           ++ RR+ F ++  + R  IL+G  IA  NIDE+I IIR     K     ++ RF+LT+ Q
Sbjct: 367 IIVRRTKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDRFALTDIQ 426

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+ +  +  ++L   K     I  E+ E+K+ + 
Sbjct: 427 AQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKLVLGIIKDELTEIKDKYG 486

Query: 488 KSTDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                  RRT+F  +V   D   L    I++E + V +++ G+++ + + +         
Sbjct: 487 DD-----RRTSFDIDVEDFDVEDL----IKEEEVVVTMTHVGYVKRIAADTYRAQNRGGK 537

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596
            +SAL  +E D ++      T D +L  +  GK Y L A  + + GR   G AI  ++ L
Sbjct: 538 GISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGTAIVNILQL 597

Query: 597 NHNQDIVT 604
           + ++ I T
Sbjct: 598 DPDESITT 605


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/731 (35%), Positives = 416/731 (56%), Gaps = 24/731 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A   V E    S
Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQA---VYEYDNHS 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+      +  
Sbjct: 255 -NVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR    +  +
Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R +   V+
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G A
Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIASESGKA 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           F++   ++I N   GK      +++  K +       +  V    + +I        + +
Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665

Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738
           GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G G 
Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSYKPSGGGV 721

Query: 739 LVPKGFPRSGK 749
           L+P+GF +  K
Sbjct: 722 LLPQGFRKITK 732


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/690 (37%), Positives = 413/690 (59%), Gaps = 42/690 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSARIVGEVIGK
Sbjct: 18  MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR++++A  +L+
Sbjct: 78  YHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+ E++EPVV P+++PNLL NG  GIAVGMAT+IP HN+ E+ +   A
Sbjct: 138 DLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQA 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ GRG   +RA+  +EE+G  +
Sbjct: 198 LIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKTTIEEIGNKA 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES      ++    R ++P+++
Sbjct: 257 R-IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIVIELRRDVNPNVV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + M++ F +NM  + +   P+++ L  +L  +L H+ EV+ RR+ F ++  + 
Sbjct: 316 LNNLFKHTAMQSNFGINMLAI-VNNEPKILNLKDVLYYYLKHQIEVIRRRTEFDLKKAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  ++DE+I++IR+    +     ++ RFSLT  Q  AIL++RL+ L  L
Sbjct: 375 RAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQAQAILDMRLQRLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I++E + L+ +  +   +L +     N I+ E+ E+K  F+       RRT   E+
Sbjct: 435 EREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFADD-----RRT---EI 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +  +++ L + +I +E + + +++ G+I        RS K     +  +  K+ D ++  
Sbjct: 487 TVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHL 546

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607
              ++   +L  +  GK Y + A  +  LS    G  I  LI +   + I     +  FV
Sbjct: 547 FITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV 606

Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            DS   L   +  G   I++++ +   AN RKG        E+   + VK+T G    ++
Sbjct: 607 EDSY--LFFATQHG---IIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661

Query: 665 GENRKLLI-FSIDQIPEMSRG----KGVRL 689
           G  + + I F    +  M R     KG+ L
Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGISL 691


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/618 (39%), Positives = 389/618 (62%), Gaps = 36/618 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NI N ++    +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENIFNKDS----DIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+ID
Sbjct: 57  DLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L L+D+ + S+E L+++I GPDFPTGGII   ++ I+E+
Sbjct: 177 IAVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRVKIRAKTHIEKKSNKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES  E +R+V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L
Sbjct: 295 DESDREGIRVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELL 352

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMV 418
             +L HR+ V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V
Sbjct: 353 NLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLV 412

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++F LTE Q +AIL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E
Sbjct: 413 AKFGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++E+K  F    D+ R      ++         + +I  E + V I++RG+I+ + S   
Sbjct: 473 LKEIKSKF----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 524

Query: 539 DLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
           +          A+   + D ++    A+T D ++ ++  G     K Y +P G   S   
Sbjct: 525 EKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTA 581

Query: 586 HGEAIQLLIDLNHNQDIV 603
            G+A+  LI+L  ++ I+
Sbjct: 582 KGKAVVNLINLQADEKIM 599


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/725 (37%), Positives = 413/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAAIHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVE 627
           K Y L    L   S    G+ I  ++ L  N+ I     V + + +  +  + G+  + +
Sbjct: 597 KTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R          E+   + V +T GD  + +  +  K++ FS D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/658 (38%), Positives = 399/658 (60%), Gaps = 38/658 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           I+L   ++I+T   +        LL+ ++ G     E ++  A   +G   +K++ ++
Sbjct: 592 INLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 649


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 282/768 (36%), Positives = 441/768 (57%), Gaps = 53/768 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+    A+KK
Sbjct: 10  QDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 130 RMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
              EI +A + LIDNP+ S++++L+++ GPDFPTGGII   +  I E+Y  GRG  ++RA
Sbjct: 190 RTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIY-GKSGIREAYESGRGRIKIRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  E +R+V+
Sbjct: 249 KTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  +F  + ME+ F + +  +   + P+V  L  +L  +L+HR+ V+ 
Sbjct: 308 ELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKVFTLLELLDLFLSHRKSVVI 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  NID I+A+IR    PK     ++++FSL+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQFSLSEIQAQA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   LL E E + ++L S       I  E+ E+KE FS   
Sbjct: 426 ILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSESLLNGIIKEELLEIKEKFST-- 483

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              +R TT  E    D  ++  + +I  EP+ V +S+RG+++ +   + +        G 
Sbjct: 484 ---KRLTTIEE----DYESIDVEDLIPNEPVVVTMSHRGYVKRVPVRTYEKQ----NRGG 532

Query: 550 SLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             KI+ + H            T D IL ++  G+ Y L    +   S    G+A+  LI+
Sbjct: 533 KGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIGKAVVNLIN 592

Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649
           L  ++ I   +T   ++S   L   +  G   I++ + +    N R  G   + +   + 
Sbjct: 593 LAPDEKIMATITTKDFNSNKSLAFFTKNG---IIKRTNLSEFKNIRSVGVRAINLDENDA 649

Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGV---RLQSYKDGGISDVICF 703
           +     ++ D   + VV      + F +D + E+ R  +GV   + +  KD  I   +  
Sbjct: 650 LVTAKIISSDIKEILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKMPKDYVIGATVVA 709

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              E +  +   G       N+    +  RGG G +  K  P++GK +
Sbjct: 710 SENEEILSVSEKGIGKRTEVNEY--RITNRGGKGVIAMKLTPKTGKLV 755


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/632 (39%), Positives = 387/632 (61%), Gaps = 40/632 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVIIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  ++ D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVTA-----FVYDSTCKLLVVSSK 620
           I+L   ++I+T      F  DS   L   S K
Sbjct: 592 INLGAQEEILTIKNSKDFTDDSYLLLTTASGK 623


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 415/704 (58%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++     +++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 272/751 (36%), Positives = 433/751 (57%), Gaps = 52/751 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G      +KKSA
Sbjct: 9   VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+RM
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H++
Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+ 
Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+   
Sbjct: 248 EIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR+
Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RF+L+E Q  AIL+
Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +S +    
Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSDT---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
            RRT     S   +    + +I  E   V +++ G+I+ L +++          +  +  
Sbjct: 483 -RRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHN 599
            E D ++  ++  T D IL  ++ G     K Y +P      GR   G  I  L++++  
Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE----YGRTAKGLPIVNLLNIDKG 595

Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653
           +  VTA +    +D     +  +  G   I + + +   AN R     + +S  E   L+
Sbjct: 596 EK-VTAMIRVGSFDEDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLI 650

Query: 654 -VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG- 708
            V++T GD   ++G    +L+ F  D I  M R   GVR    +DG   +V+  +I E  
Sbjct: 651 SVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPG 708

Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             +  +   G     SE+D    L  RGGVG
Sbjct: 709 QEILVVTEKGYGKRTSEDDY--RLQSRGGVG 737


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 264/698 (37%), Positives = 413/698 (59%), Gaps = 40/698 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE+IIGPDFPTGGII   +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KHKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L  +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTAMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   E+++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIEELNGILKSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---------RSLKSHSVDLS 541
               RRT   E+  + +    + +I  EP+ V +S +G++         R  +     LS
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYERQNRGGKGKLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
              + E D ++    A+T D +L ++  G     K Y +P  N ++    G+AI  LI L
Sbjct: 538 GSTY-EDDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEANRIA---MGKAIVNLISL 593

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--K 651
             ++ I+       +     L   +  G       SE  +N   G   + +  ++++   
Sbjct: 594 APDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEDDELVSA 653

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR 688
            +V     H+ +   +   + F ++ + EM R   GVR
Sbjct: 654 KIVDKNAKHLLIASHSGTFIKFPLENVREMGRSTHGVR 691


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/688 (36%), Positives = 411/688 (59%), Gaps = 30/688 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+E+G+    A+KKSA
Sbjct: 9   VKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEA+M
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEAKM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG SGIAVGMAT+IP H +
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NP+ISI +L+EYI GPDFPTG  I+  R  I ++Y+ GRG   +RA+ 
Sbjct: 189 GEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLRAQT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  +G   I+V+E+PYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 248 EIEEY-KGKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H+ +V+ RR+
Sbjct: 307 RRDANANVLLNNLYKQTALQTSFGINLLALVEGQ-PKVLTLKECLEHYLGHQVQVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL IA  ++DE+I++IR+    +     ++ +FSL+  Q  AIL+
Sbjct: 366 AFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+A+  ++ ++L  G++    I  E+ EVKE F+      
Sbjct: 426 MRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFNDE---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT    +S  +     + +I ++ + + +++ G+I        RS +     +  +  
Sbjct: 482 -RRTV---ISMNEDHLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRGGKGIQGMGT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
            + D ++     ++   IL  +  GK Y L    +  L     G  I  L+ +  ++ I 
Sbjct: 538 NDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDETIS 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKVTGD 659
           T      +D    L  ++  G A   + S   AN R+G  F + +  ++++  V    G 
Sbjct: 598 TVIPIEEFDDNSYLFFLTKHGIAKRTQLSS-FANIRRGGLFAITLRGDDELHGVRLTDGG 656

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRGKG 686
              ++G    + I F    +  M R  G
Sbjct: 657 QEVIIGTKHGMAIRFHETDVRLMGRTAG 684


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 283/784 (36%), Positives = 431/784 (54%), Gaps = 71/784 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ YI GPDFPT GII   R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421
           R  IL+GL +A  NIDE+IA+I+    P            KP  V+ F            
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527
            +    I  E+  VKE F        RRT   +    D + L  + +I +E   V +S+ 
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547

Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+  SL S+           A   KE D +K  L A++ D IL  ST GK Y L    
Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E    
Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
             KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R     +G++L
Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++ ++  +  +I  K    +      G     + +D       RGG G +  +   R+GK
Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783

Query: 750 FLSS 753
            +S+
Sbjct: 784 VVSA 787


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/655 (38%), Positives = 399/655 (60%), Gaps = 32/655 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE   G   I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ V+
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN  +     I   IRE  E  + 
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
               G  R T          T    +++KE I V+++ +G+++ L  +           L
Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L  
Sbjct: 537 SSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596

Query: 599 NQDIVT-----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++I+T      F  DS   LL+ ++ G     E ++  A   +G   +K++ ++
Sbjct: 597 QEEILTIKNSKEFTDDSY--LLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 649


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/573 (40%), Positives = 359/573 (62%), Gaps = 22/573 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A 
Sbjct: 5   IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV
Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D+ K  M+ RF L++ Q 
Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F  
Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540
                +RRT                  E+  IT  ++N G+I+ L ++           +
Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             +     D +K  +   T D +L  + +GK Y
Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/611 (39%), Positives = 379/611 (62%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +VS F L+E Q +
Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSSFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L++RL+ L  LE ++++ E + LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           I+L   ++I+T
Sbjct: 592 INLGDQEEILT 602


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 278/772 (36%), Positives = 421/772 (54%), Gaps = 59/772 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K V++   +   YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL     ++K 
Sbjct: 5   NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VGEV+   HPHGD SVY++LVR+AQP+  RYPL+ GQGNFG+ D D  AA RYTEA+
Sbjct: 65  AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A+ +L+ +D+D VDF   Y+ +  EPVVFP++ PNLL NGT+GIAVGMAT+IP HN
Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC+  + LI+NPE + E L   + GPDFPTGG+I + RE I  +Y  GRG   +RAR
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLI-QGREGIRNTYANGRGRIVIRAR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  RG   I+ TE+PYQV K+ L++KIAEL   KRI  + ++RDES  + +R+V+ 
Sbjct: 244 THIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVE 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P  ++ S+F  + M++ F  NM  L +   PQ + L   L+ ++ HR +V+ R
Sbjct: 304 LK-RDANPRSILNSLFKYTAMQSSFNTNMLAL-VDSQPQTLTLKKFLQHYITHREQVITR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDA 430
           R+ F ++  + R  IL+GL IA  N+DE+I IIR   +    +       F  +  Q  A
Sbjct: 362 RTQFELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFGFSNEQARA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL SL  L+  +++ EL ++L   +    LL+   +    I  +++E+KE F  + 
Sbjct: 422 VLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDINEIRGIIMADLKELKEKFGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E    D     + +I  E + V ++ +G+I+ L S +          ++ 
Sbjct: 481 ----RRTEIEEGEVRDFK--DEDLIPNEEVVVTLTEKGYIKRLPSGTYRAQRRGGRGVTG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +  +E D+++  L  HT D +L  +  G+ + L    L   S    GE +  LI +   +
Sbjct: 535 MATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTARGEHLINLISIEQRE 594

Query: 601 DIVTAFVY---DSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             VTA VY     T   LVV++ KG       S+     R G   + +  ++++ +  K+
Sbjct: 595 R-VTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDEL-IGAKL 652

Query: 657 TGDH--VAVVGENRKLLIFSIDQIPEMSRGKG-------------VRLQSYKDGGISDVI 701
            G    V ++  +   + F +DQ+   SR  G             V L +   GG   V+
Sbjct: 653 VGPEADVLLITLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTVVSLNAVIPGGELLVV 712

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   T ID    +YN            RGG G L  K   ++GK  S+
Sbjct: 713 TEHGYGKRTPIDEYP-TYN------------RGGSGVLTSKVTEKTGKVASA 751


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/627 (39%), Positives = 384/627 (61%), Gaps = 30/627 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NIDE+I II++    K     +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN  +     I   IRE  E  + 
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
               G  R T          T    +++KE I V+++ +G+++ L  +           L
Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L  
Sbjct: 537 SSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596

Query: 599 NQDIVT-----AFVYDSTCKLLVVSSK 620
            ++I+T      F  DS   L   S K
Sbjct: 597 QEEILTIKNSKEFTDDSYLLLTTASGK 623


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 357/565 (63%), Gaps = 20/565 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  V+L   +   +L YA+S I  RAIPD+RDG KPVHRRI++AM ++G+    A+K
Sbjct: 6   ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +DF+D Y+  + EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +  LAL  +P+I+I++L+EYI GPDFPT G+IV  R  I  +Y  GRG   +R
Sbjct: 186 HQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIV-GRSGIRRAYETGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E+   G   I+VTE+PYQV K++LIE+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 245 ARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + M+T F +N+  L  G+ P+V+ L   LK +L H+ EV+ 
Sbjct: 305 IEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQ-PKVLNLKQALKFYLDHQEEVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  +ID II +IR+    D  +  ++ +FSL+E Q  A
Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFSLSEKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEIKERFNDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
               RRT     S  D+    + +I +E I + +++ G+I        RS K     +  
Sbjct: 483 ----RRTEIIAAS-VDQIE-DEDLIPQESIAITLTHNGYIKRLPISTYRSQKRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLS 567
           +   E D ++  L   T D IL  +
Sbjct: 537 MGTNEDDFVEHLLTTSTHDTILFFT 561


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/611 (38%), Positives = 376/611 (61%), Gaps = 26/611 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N     N+K  ++   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   DENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIV 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPL+ G GNFG++DGD AA
Sbjct: 62  ADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D VD+ D Y+ E+ EPVV P +FPNLL NGT+GIAVGM
Sbjct: 122 AMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E  +A  A++DNP+I++ +L+E YI GPDFPTGG I+  R  I ++Y  G
Sbjct: 182 ATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYIL-GRAGIKQAYETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
           RG   +R++  VE++  G   I+VTEIPY V K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E +RIV+  + + +  D+++  ++ ++ ++T F +NM VL +   PQ + L  +LK +L
Sbjct: 301 MEGIRIVIELR-KDVQSDVILNQLYRMTSLQTSFGVNMIVL-VDNAPQQLGLKDVLKCYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            H+ +V  RR+ F ++  + R  IL+GL IA  +ID II++IR+       M   +  F 
Sbjct: 359 DHQIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMENFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL+++ R L  LE  +I+ E D+L+A+   +  +LN+  +    I  E+ E+
Sbjct: 419 LSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNHSRVLEIIRSELTEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           KE ++      +RR+   E+  A+     + +I +E + + ++  G+++ +   +  L  
Sbjct: 479 KEKYND-----KRRS---EIIDAEIDMQDEDLIPQEDVVITMTVNGYVKRIPVDTYRLQN 530

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQL 592
                   +   E D +   L   T D +L+ +  GK Y +      L S    G  I  
Sbjct: 531 RGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSKGIPIVN 590

Query: 593 LIDLNHNQDIV 603
           L++L+ ++ ++
Sbjct: 591 LLNLDKDEKVL 601


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 270/784 (34%), Positives = 444/784 (56%), Gaps = 76/784 (9%)

Query: 13  VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +E+N   ++LR     +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +E+GL   
Sbjct: 1   MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA 
Sbjct: 61  KPYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD ++ Y+    EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 121 RYTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG 
Sbjct: 181 NIPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLL-GRSGIVKAYTTGRGS 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             +R +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES  + 
Sbjct: 240 IIMRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L   L  +L H+
Sbjct: 300 MRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEALYHYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           +EV+ RR+ F +     R  IL+GL IA  NID II++IR     ++ K  ++ +FSLT+
Sbjct: 358 KEVVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQFSLTD 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ E+K+ 
Sbjct: 418 VQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLEDILAKPERVIEIVKEELLEIKDK 477

Query: 486 FSKSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           +       +RR+   E  + + D     + +IEKE I + +S+  +I+ L + +      
Sbjct: 478 YGD-----KRRSVIIEGQIDQID----NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGR 528

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG------ 587
               ++ +   + D++   L   T D IL  +  GK YTL     N +S +  G      
Sbjct: 529 GGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINL 588

Query: 588 ------EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                 E +  +I ++  Q+  T+ ++ +   ++  S  G+   +         +KGK  
Sbjct: 589 LEIEKEEKVNSIIAISDLQEEDTSLIFSTKFGIIKKSKLGDYASI--------LKKGKIA 640

Query: 642 LKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           LK+   + +  V ++T D     V   G+  ++    + Q+  +SRG KG+ L       
Sbjct: 641 LKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQMGRVSRGVKGITLSP----- 695

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSG 748
             D +      G+  +D + +    +EN  +G + K        RGG G  V K   ++G
Sbjct: 696 -DDYVV-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTG 748

Query: 749 KFLS 752
           K ++
Sbjct: 749 KIVA 752


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/728 (36%), Positives = 415/728 (57%), Gaps = 33/728 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L Y++S I  RA+PD+RDG KPVHRRI++A  E G+      +KSA +VG V+G+ HPH
Sbjct: 21  FLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPHRKSANLVGLVLGQYHPH 80

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RYTEAR+T +A  +L+ +++
Sbjct: 81  GDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYTEARLTALAVEMLRDIEK 140

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDFR  Y++   EPVV P++ PNLL NG++GIAVGMATSIP HN+ E+ E  + L++N
Sbjct: 141 DTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIPPHNLTEVVEGLIHLLEN 200

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE ++++L+ YI GPDFPT G+I+ +R  + ++YR GRG   VR R  +EE   G   IV
Sbjct: 201 PEATVDELMRYIKGPDFPTAGLIMGTR-GMRQAYRTGRGSVTVRGRCEIEEKKGGRTSIV 259

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           VTEIPY V K++L+E+IAEL+  K+I  + D+RDES    +RIV+  + R + P +++  
Sbjct: 260 VTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRIVMDIR-RDISPSVILNK 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F + +  L  G  PQV+ L  +L ++L HRREV+ RR+ F ++    R+ 
Sbjct: 319 LYRNTQLQDNFGITLLALVDGE-PQVLNLKEMLNQYLNHRREVIRRRTEFDLKVARDRLH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           I++GL IA  N+DE++ IIRN    K     ++SRF LTE Q +AI+ +RLR L  LE  
Sbjct: 378 IVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSRFDLTEMQAEAIVEMRLRQLTGLERN 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +++ E   L+     ++ +L   ++    I  ++ ++K  F       +RRT   E+   
Sbjct: 438 KLEEEYRELVGRISDLEDILRRPERVQAIIKEDLIDIKTRFGD-----KRRT---EIREE 489

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
           D +   + +IE+E I V +SNRG+I        RS +     ++    +  D        
Sbjct: 490 DASFEAEDLIEEESIVVTLSNRGYIKRQPLSTYRSQRRGGKGVTGTAIRSEDFATDIFVT 549

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
            T   +L  +  G+ Y+L A  +   S +  G  +   + LN  + + T      +D+  
Sbjct: 550 TTLSTLLFFTNHGRVYSLKAYQVPEASRQSRGTPVINFLRLNPGEKVNTVISVNRFDAGQ 609

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLL 671
            L++ +  G    V   E     R G   + + +++++  V K+  GD + +V      +
Sbjct: 610 HLVMATRTGMVKKVPIDEFRQIRRSGIIAINLRNQDELVGVQKIYKGDRLVLVTGRGYSI 669

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +F    +  M RG  GVR  S + G  + D+  +K  EG   +    R Y +  +     
Sbjct: 670 VFDEGDVRVMGRGAAGVRGISLEQGDKVIDIDKYK--EGADMLLVTERGYGKRTSLQELR 727

Query: 730 LGKRGGVG 737
           L KRGG G
Sbjct: 728 LQKRGGKG 735


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/704 (35%), Positives = 415/704 (58%), Gaps = 50/704 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           F+      +RRT   E++      ++ + +I ++ I + +++ G+I+ L + +       
Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D ++  L   T D IL  +  GK Y                +P  NLL
Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640
            G   GE I  +I +    D    F++ +T + +   +  ++F        AN R  G  
Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
            + +  E+++  V   +GD   +VG +  +LI F+   +  M R
Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 363/569 (63%), Gaps = 22/569 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSA
Sbjct: 9   VREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H +
Sbjct: 129 SKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++   
Sbjct: 248 EIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEI 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLEHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL+
Sbjct: 367 AYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            RRT   E+  A   T++ + +IE+E I V +++ G+I        RS K     +  + 
Sbjct: 483 -RRT---EIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             E D ++  +   T D IL  S  GK Y
Sbjct: 539 TNEDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 269/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  E+++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/614 (40%), Positives = 382/614 (62%), Gaps = 36/614 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   A 
Sbjct: 4   LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA RY
Sbjct: 64  YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT+I
Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H V EI +A + LIDNP+  + ++L+++ GPDFPTGGII   +  I E+Y  GRG  +
Sbjct: 184 PPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIY-GKNGIREAYETGRGRIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VRA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  E +R
Sbjct: 243 VRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++  ++++  +F  + ME+ F + +  +   + P++  L  +L  +++HR+ 
Sbjct: 302 VVIELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLGLFISHRKS 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   PK     ++S+F+L+E Q
Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE FS
Sbjct: 420 AQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFS 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  +R T  E    D  ++  + +I  E + V +S+RG+++ +   + +       
Sbjct: 480 T------KRLTAIE---EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526

Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
            G   KI+ + H            T D I+ ++  G+ Y L    +   S    G+A+  
Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586

Query: 593 LIDLNHNQDIVTAF 606
           LI+L  ++ I+   
Sbjct: 587 LINLAPDEKIMATI 600


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/607 (40%), Positives = 380/607 (62%), Gaps = 27/607 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NIDE+I II++    K     +V+ F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN  +     I   IRE  E  + 
Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
               G  RRT         K ++   M +KE I V+++ +G+++ L  +           
Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L 
Sbjct: 536 LSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG 595

Query: 598 HNQDIVT 604
             ++I+T
Sbjct: 596 DQEEILT 602


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D P+ S+E L+E I GPDFPT  II   R  I+E YR G+G   +RAR 
Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+  
Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  +L+GL IA  NIDE+IA+I+    P   K  ++S+            
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q  AIL LRL  L  LE+ +I +E + LL   
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I +E
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA H K+ D ++  + A T D +L  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  +  S GR          GE I  ++ +   +D   ++V+ +T K  V
Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673
                NAF         +  +    + V  EE   LV V +T     + +  +  K++ F
Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706

Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
              ++  M R  +GVR ++  KD  +  ++      G T + +    Y +  +     + 
Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +  +   R+GK + S
Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 283/765 (36%), Positives = 429/765 (56%), Gaps = 99/765 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   AA+KK
Sbjct: 9   EDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 69  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMTQ +E IL+ ++++ VDF   Y++   EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 129 RMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ EA + LID+P+  +E L+ ++ GPDFPTGGII   ++ I+E+YR GRG  RVRA
Sbjct: 189 RLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIY-GKQGIIEAYRTGRGRIRVRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +E+  +    IV+ E+PYQ  K+RL+E+IAEL   K I  + ++RDES  E +R+V+
Sbjct: 248 KTHIEK-NKTKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRVVI 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  +F  + MET F + +  +   + P++  L  +L  +L HR+ V+ 
Sbjct: 307 ELKKDAM-SEIVLNHLFKSTAMETTFGIILLAIH-NKEPKIFTLLELLNLFLNHRKTVVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  +IDEI+++IR   +  + K  +++RF L+E Q  A
Sbjct: 365 RRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMARFGLSEIQSQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   LL E E++ ++L S ++    I  E+ E++E FS   
Sbjct: 425 ILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEEKLNEIIKQELIEIREKFST-- 482

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              +R+TT  E    D  ++  + +I  EP  V +S+RG+++ +   S +        G 
Sbjct: 483 ---KRKTTIEE----DYESIDIEDLIPNEPTVVTMSHRGYVKRVPLRSYEKQ----NRGG 531

Query: 550 SLKIALHAH------------TTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQ 591
             KI+ + H            T D IL ++  G     K Y +P AG    G+     IQ
Sbjct: 532 KGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIGKAVVNLIQ 591

Query: 592 L-----------------------------------------------LIDLNHNQDIVT 604
           +                                                I+L+ N ++VT
Sbjct: 592 IGADEKIMATITTQDFNEDKSLMFFTKNGIVKRSNLSEFKNIRSVGIRAINLDDNDELVT 651

Query: 605 AFVYDSTCK-LLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           A + DS  K + V + KG    F VE+   I    +G T ++   +E         GD  
Sbjct: 652 ARIIDSNVKEIFVATYKGMCIRFPVEDIREIGRVARGVTGIRFKEDEDYVAGATTIGD-- 709

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
               E  +LL  S   I + +  +  RLQS    G   VI  K+ 
Sbjct: 710 ----EKEELLTVSEKGIGKRTEAEEYRLQSRGGKG---VIAMKLT 747


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + + ++    R  IL+GL +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V+E F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELESVREAFGDA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 276/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVLNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/621 (38%), Positives = 373/621 (60%), Gaps = 55/621 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ +I GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNFIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RIV+ 
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR EV+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFEVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  L              E+EKID+       ++ +I   I+E++E+ + ++ 
Sbjct: 420 LDMKLQRLTGL--------------EREKIDN-------EYKEIEALIKELREVLADNSK 458

Query: 492 L---------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           +                 +R T  E  R +   L + +I+ E I +  +N+G+++ +++ 
Sbjct: 459 IYEIMKKELLELKEKYNDKRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEAS 516

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
                      +SAL+  E D  +  + A T D +++ +  GK Y + A  +  LS +  
Sbjct: 517 KYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSR 576

Query: 587 GEAIQLLIDLNHNQDIVTAFV 607
           G  I  +I+L+  + +    V
Sbjct: 577 GRLIGNIINLSEGEKVRDTIV 597


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +SN G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I      D  + +  +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/699 (37%), Positives = 423/699 (60%), Gaps = 42/699 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   +   + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSA
Sbjct: 9   IKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+S+VR+AQ F  R  L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VDF   Y+ E+ EPVV PS++PNLL NG +GIAVGMAT+IP HN+
Sbjct: 129 SKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +   ALI NP+I+  +L+EYI GPDFPT G ++     I ++Y  GRG   +RAR 
Sbjct: 189 REVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVM-GHSGIRQAYTTGRGSVTMRARA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+ G G   I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+   
Sbjct: 248 IIEDNG-GKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ +++  + M++ F +NM  L + R P+V+ L  +L  +L H+ E++ RR+
Sbjct: 307 RRDVNPNVVLNNLYKQTQMQSTFGINMLAL-VNREPKVLNLRDMLYHYLQHQIEIIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR     D+ +  +++RFSL+  Q  AIL+
Sbjct: 366 EYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITRFSLSLEQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   LLA+  +  ++L   +   + I+ E+ E+KE F       
Sbjct: 426 MRLQRLTGLERDKIEAEYAELLAKIAEYKAILADEQLVLDIISTELNEIKERFGDD---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   E++  +   L + +I +E + + I++ G++        RS +     +  +  
Sbjct: 482 -RRT---EITIGEDEILDEDLIPREDVIISITHSGYVKRLPVTTYRSQRRGGRGVIGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    ++T   +L  +  GK Y L A  +  LS    G  I  L+ +   + +V
Sbjct: 538 KDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDLSRTARGTPIINLLQIEQGE-VV 596

Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKV 656
            A +    +D+   L   + +G   +V+++ +   AN RK    + +S  E   L+ VK+
Sbjct: 597 NAVIPVEAFDNDKYLFFATRQG---VVKKTPLDDYANIRK-VGLIAISLREDDDLISVKL 652

Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689
           T G+   ++G ++ + I F    +  M R     KG++L
Sbjct: 653 TDGNQEIIMGTSQGMSIRFPEQDVRSMGRSATGVKGIQL 691


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 364/602 (60%), Gaps = 24/602 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  ++KKSAR+V
Sbjct: 4   ITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARVV 63

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEARM+++
Sbjct: 64  GDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSKL 123

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +   L  +++  VDFRD Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E+
Sbjct: 124 SSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGEL 183

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               + L+DNPE  IE L+++I GPDFPTG +    +  + E+Y  GRG  ++R    +E
Sbjct: 184 INGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGK-GLREAYLTGRGSIKIRGVVNIE 242

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IV+TEIPY + KS ++EKIA+L+   +I  + D+RDES  + +R+V+  K  
Sbjct: 243 EKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKKG 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++  D+++ S++  + +E  F +NM  ++  R PQ+M L  IL  +L HRREV+ RR+ F
Sbjct: 303 AI-ADIIINSLYKFTQLEQSFGINMMAVNANR-PQLMNLKQILAAFLEHRREVIIRRTRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +   ++R  IL+GL IA  NIDE++ IIR   N D+ +  ++ RF L++ Q  AIL++R
Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDRFELSKVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   +L + E   S+L + +     I  E+ E+K+ ++       R
Sbjct: 421 LQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVLKGVIRDELVEIKDNYATE-----R 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           +T   + +  D     + +I  +   + +S RG+I+          K     ++ +  K+
Sbjct: 476 KTVLMDHNPDDIDI--EDLIPDDDAVITLSRRGYIKRTPLSNYQKQKRGGKGIAGVQTKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
           GD +   L       +LL ++ GK + +    +   S    G  I  L+ L  ++ I TA
Sbjct: 534 GDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGAHIANLLPLEKDETIATA 593

Query: 606 FV 607
             
Sbjct: 594 MT 595


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/725 (37%), Positives = 414/725 (57%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I +E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I      D  +    +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/689 (37%), Positives = 411/689 (59%), Gaps = 40/689 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+     FKKSARIVGEVIGK
Sbjct: 18  MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKKSARIVGEVIGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR++++A  +L+
Sbjct: 78  YHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ +DF   Y+ E+ EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+ +   A
Sbjct: 138 DINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPHNLGEVIDGVQA 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPEIS  +L++YI GPDFPT   I+  R  I ++Y  GRG   +RA+  +EE    +
Sbjct: 198 LIKNPEISSLELMDYIKGPDFPTAAYIL-GRSGIRQAYTTGRGSITMRAKTTIEEHNNKA 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKIAEL+  K+I  + D+RDES      V+    R ++P+++
Sbjct: 257 R-IVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVVIELRRDVNPNVV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + +++ F +NM  + +   P+++ L  +L  +L H+ EV+ RR+ F ++  + 
Sbjct: 316 LNNLYKHTALQSTFGINMLAI-VNNEPKILTLKDVLSHYLQHQVEVVRRRTEFDLKKAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDE+IA+IR   ++++ +  +++RF L+  Q  AIL++RLR L  L
Sbjct: 375 RAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAILDMRLRRLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E + LL +  +   +L + +     I  E++E++E ++       RRT   E+
Sbjct: 435 EREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADE-----RRT---EI 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +  +++ L + +I +E + + I++ G+I        RS K     +  +  K+ D ++  
Sbjct: 487 TIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHL 546

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----Y 608
              ++   ++  +  GKAY L A  +  L     G  I  LI +   +  V A +    +
Sbjct: 547 FVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGE-TVNAVIEVERF 605

Query: 609 DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVG 665
           D    L   + +G   IV+++ I    N RKG        E+   + VK+T G+   ++G
Sbjct: 606 DDNKYLFFATKQG---IVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNEEVIMG 662

Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRL 689
             + + I F    +  M R     KG+ L
Sbjct: 663 TAQGMSIRFPESDVRSMGRAATGVKGITL 691


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/729 (37%), Positives = 415/729 (56%), Gaps = 72/729 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NID+II +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E++ V++ +  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNA 623
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D      +  + G+ 
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDK----FIFMATGDG 652

Query: 624 FIVEES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
            + + S +  +N R  G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  
Sbjct: 653 TVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRA 712

Query: 681 MSR-GKGVR 688
           M R   GVR
Sbjct: 713 MGRTASGVR 721


>gi|332702341|ref|ZP_08422429.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
 gi|332552490|gb|EGJ49534.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
          Length = 827

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/695 (37%), Positives = 406/695 (58%), Gaps = 34/695 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS++  +E+ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  A+KKSAR+
Sbjct: 6   TVSIKSEIEKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNSYNRAYKKSARV 65

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 66  VGDVIGKYHPHGDQSVYDALVRMAQDFSMRDLVVDGQGNFGSIDGDAAAAMRYTEVRMSR 125

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   L  ++++ VDFR  Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E
Sbjct: 126 LASEFLADIEKETVDFRPNYDNSLQEPAVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 185

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+DNPE +   L  ++ GPDFPT       R  ++++Y  GRG  ++R    V
Sbjct: 186 LMDATLHLLDNPECTPRDLTAFVKGPDFPTAASCYGGR-GLMDAYETGRGSIKIRGTVAV 244

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           EE   G   IV++EIP+ + KS L+EKIA LI  KRI  + D+RDES  + +RIVL  K 
Sbjct: 245 EEKKGGRESIVISEIPFALNKSSLVEKIAALINDKRIDGVSDLRDESDRKGIRIVLDLKK 304

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++ PD+++  ++  + +E+ F +NM  + +G  P ++ L  IL  +L HRREV+ RR+ 
Sbjct: 305 GAI-PDIIINMLYKFTPLESSFGINMMAV-VGSRPMLLNLKSILDYFLQHRREVILRRTR 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           F +   ++R  IL+GLLIA  NIDE++ IIR+     + K  ++ RF L++ Q  AIL++
Sbjct: 363 FDLDKAEKRAHILEGLLIALDNIDEVVRIIRSSATALEAKSRLMERFGLSDVQSQAILDM 422

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE+ +++ E   LL + E + S+L + +     I  E+ EV+ IF+       
Sbjct: 423 RLQRLVNLEQEKLREEFAELLKKIEYLKSILTNEEVLKGVIREELSEVRRIFATP----- 477

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFK 546
           R+T   E    D   ++  +I  E + + +S RG+I+  +L S+         +S +   
Sbjct: 478 RKTVILE-QDLDSIDIED-LIADEEVVLTLSRRGYIKRTTLDSYQQQKRGGKGISGVLTG 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D +           +LL +  G+ + L    +  G     G  I  L+ L+ ++ + T
Sbjct: 536 DDDFVHTFCSTSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTT 595

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +      + V+ +G       + + AN R  G   + +  ++++ +V ++ G D
Sbjct: 596 ALTVREFAEHNYFMFVTKRG-MIKKTSASLYANVRSSGVRAVNLRDDDELIMVREINGRD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
            + +V      + F+  +I  + RG    KG+ L+
Sbjct: 655 ELILVTAEGTSIRFTSAEIRPIGRGATGVKGIALR 689


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 384/623 (61%), Gaps = 28/623 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTVFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
             +RRTT  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 --KRRTTIEE-ERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +  + A T D I++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV---YDSTCKLLVVSSKG 621
           +    V   + S  +++ ++  G
Sbjct: 592 VRDTIVIKEFSSEKEVVFITKNG 614


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/700 (36%), Positives = 391/700 (55%), Gaps = 69/700 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F   ++KSA
Sbjct: 16  IEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKPYRKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +ALIDNP+I+++K++E I GPDFPTGGII+     +  +Y  GRG   +RA+ 
Sbjct: 196 GEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GHSGVRSAYETGRGSIIMRAKV 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+   
Sbjct: 255 DIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +  D+++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418
            + ++    R  +L GL +A  NIDEIIA+IR    P+   +                  
Sbjct: 374 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMERRWPAADVAPLIKL 433

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      + ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L S
Sbjct: 434 IDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILAS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVV 523
             +  + I  E+  ++E F+       RRT F     E+   D       +I  E + V 
Sbjct: 494 RSRIMSIIKDELNVLREAFATP-----RRTVFGFGSAEMDCED-------LIAPEDMVVT 541

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
           +S+ G+I        R+ +      S +  K+ D +      +T   +L  ST G     
Sbjct: 542 VSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYKE 601

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624
           K + LP G   + +  G A+  ++ L   + I T           S   ++  +++G   
Sbjct: 602 KVWRLPLG---TPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVR 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             + S+ +   R GK  +K+  E+++  V   T  H  V+
Sbjct: 659 RNKLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVL 698


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D P+ S+E L+E I GPDFPT  II   R  I+E YR G+G   +RAR 
Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+  
Sbjct: 247 EIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  +L+GL IA  NIDE+IA+I+    P   K  ++S+            
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q  AIL LRL  L  LE+ +I +E + LL   
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I +E
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA H K+ D ++  + A T D +L  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  +  S GR          GE I  ++ +   +D   ++V+ +T K  V
Sbjct: 598 KLYWLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673
                NAF         +  +    + V  EE   LV V +T     + +  +  K++ F
Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706

Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
              ++  M R  +GVR ++  KD  +  ++      G T + +    Y +  +     + 
Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +  +   R+GK + S
Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/729 (37%), Positives = 415/729 (56%), Gaps = 72/729 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NID+II +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E++ V++ +  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNA 623
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D      +  + G+ 
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDK----FIFMATGDG 652

Query: 624 FIVEES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
            + + S +  +N R  G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  
Sbjct: 653 TVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRA 712

Query: 681 MSR-GKGVR 688
           M R   GVR
Sbjct: 713 MGRTASGVR 721


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 285/802 (35%), Positives = 439/802 (54%), Gaps = 87/802 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D P+ S+E L+E I GPDFPT  II   R  I+E YR G+G   +RAR 
Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I++ E+PYQV K+RLIE+IAEL+  K++  +  +RDES +    V+  
Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  +L+GL IA  NIDE+IA+I+    P   K  ++S+            
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q  AIL LRL  L  LE+ +I +E + LL   
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I +E
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA H K+ D ++  + A T D +L  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  +  S GR          GE I  ++ +   +D   ++V+ +T K  V
Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD--HVAVVGENRKLLIF 673
                NAF         +  +    + V  EE   LV V +T     + +  +  K++ F
Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRF 706

Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
             +++  M R  +GVR ++  KD  +  ++      G T + +    Y +  +     + 
Sbjct: 707 DENKVRPMGRTARGVRGIRVEKDQAVKSLVVVD-PNGGTILTATENGYGKRTHIDEYRVS 765

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +  +   R+GK + S
Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/614 (40%), Positives = 382/614 (62%), Gaps = 36/614 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   A 
Sbjct: 4   LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA RY
Sbjct: 64  YKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT+I
Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H V EI +A + LIDNP+  + ++L+++ GPDFPTGGII   +  I E+Y  GRG  +
Sbjct: 184 PPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIY-GKNGIREAYETGRGRIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VRA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  E +R
Sbjct: 243 VRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++  ++++  +F  + ME+ F + +  +   + P++  L  +L  +++HR+ 
Sbjct: 302 VVIELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLGLFISHRKS 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   PK     ++S+F+L+E Q
Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE FS
Sbjct: 420 AQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFS 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  +R T  E    D  ++  + +I  E + V +S+RG+++ +   + +       
Sbjct: 480 T------KRLTAIE---EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526

Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
            G   KI+ + H            T D I+ ++  G+ Y L    +   S    G+A+  
Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586

Query: 593 LIDLNHNQDIVTAF 606
           LI+L  ++ I+   
Sbjct: 587 LINLAPDEKIMATI 600


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 272/725 (37%), Positives = 413/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I +E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I      D  +    +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D P+ S+E L+E I GPDFPT  II   R  I+E YR G+G   +RAR 
Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+  
Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  +L+GL IA  NIDE+IA+I+    P   K  ++S+            
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q  AIL LRL  L  LE+ +I +E + LL   
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I +E
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA H K+ D ++  + A T D +L  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  +  S GR          GE I  ++ +   +D   ++V+ +T K  V
Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673
                NAF         +  +    + V  EE   LV V +T     + +  +  K++ F
Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706

Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
              ++  M R  +GVR ++  KD  +  ++      G T + +    Y +  +     + 
Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +  +   R+GK + S
Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/751 (36%), Positives = 433/751 (57%), Gaps = 52/751 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G      +KKSA
Sbjct: 9   VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+RM
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H++
Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+ 
Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+   
Sbjct: 248 EIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR+
Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RF+L+E Q  AIL+
Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +S   D+ 
Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYS---DIR 483

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
           R   T   +   +     + +I  E   V +++ G+I+ L +++          +  +  
Sbjct: 484 RTEITSGGIEMIE----DEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHN 599
            E D ++  ++  T D IL  ++ G     K Y +P      GR   G  I  L++++  
Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE----YGRTAKGLPIVNLLNIDKG 595

Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653
           +  VTA +    +D     +  +  G   I + + +   AN R     + +S  E   L+
Sbjct: 596 EK-VTAMIRVGSFDEDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLI 650

Query: 654 -VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG- 708
            V++T GD   ++G    +L+ F  D I  M R   GVR    +DG   +V+  +I E  
Sbjct: 651 SVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPG 708

Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             +  +   G     SE+D    L  RGGVG
Sbjct: 709 QEILVVTEKGYGKRTSEDDY--RLQSRGGVG 737


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GII   R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421
           R  IL+GL +A  NIDE+IA+I+    P            KP  V+ F            
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527
            +    I  E+  VKE F        RRT   +    D + L  + +I +E   V +S+ 
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547

Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+  SL S+           A   KE D +K  L A++ D IL  ST GK Y L    
Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E    
Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
             KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R     +G++L
Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++ ++  +  +I  K    +      G     + +D       RGG G +  +   R+GK
Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783

Query: 750 FLSS 753
            +S+
Sbjct: 784 VVSA 787


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GII   R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421
           R  IL+GL +A  NIDE+IA+I+    P            KP  V+ F            
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 434

Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527
            +    I  E+  VKE F        RRT   +    D + L  + +I +E   V +S+ 
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 545

Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+  SL S+           A   KE D +K  L A++ D IL  ST GK Y L    
Sbjct: 546 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 605

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E    
Sbjct: 606 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 665

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
             KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R     +G++L
Sbjct: 666 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 725

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++ ++  +  +I  K    +      G     + +D       RGG G +  +   R+GK
Sbjct: 726 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 781

Query: 750 FLSS 753
            +S+
Sbjct: 782 VVSA 785


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 257/638 (40%), Positives = 378/638 (59%), Gaps = 65/638 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN EI+I++L+EYI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+  VKE F+ +     RRT   E++ A      + +I +E
Sbjct: 485 AELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLINQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      +A   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
                K Y LP   L S    G+ I  ++ L  N+ I 
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 631


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTSVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/731 (37%), Positives = 413/731 (56%), Gaps = 76/731 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 DRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LIDN   +I++L+E I GPDFPTGGII   R+ I E+YR GRG   VRA+ 
Sbjct: 188 TEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGII-NGRKGIFEAYRTGRGKIYVRAKT 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++   
Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++ +++  + M+T F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR+
Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQ-PKIFNLKEMLEAFIRHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409
            + ++    R  IL+GL IA  NID II +IR                            
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEK 425

Query: 410 --EDKPKPVMVS--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
             +D  +P  ++        ++ LT  Q  AIL+LRL+ L  LE   I  E  +LL +  
Sbjct: 426 AGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S ++    I  E+  VK      T  G  R T  E+S A      + +I +E 
Sbjct: 486 ELLHILGSTERLMEVIREELEAVK------TQYGDERMT--EISAASADISMEDLITQED 537

Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S++G+++        + +      SA   K+ D ++  L A+T D IL  S+ GK
Sbjct: 538 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGK 597

Query: 572 AY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            Y      LP   L S    G  I  L+ L   + I TA +    Y +   +L  ++KG 
Sbjct: 598 VYWMRVFQLP---LASRTARGRPIVNLLPLGEGERI-TAILPVEEYSADKFILFATAKGT 653

Query: 623 AFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
              V+++ + A +R    G   + ++ ++++  V    G++ V +  +  K++ F+ DQ+
Sbjct: 654 ---VKKTALNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQV 710

Query: 679 PEMSR-GKGVR 688
             M R   GVR
Sbjct: 711 RAMGRTATGVR 721


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ KSARI+
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+RM+++
Sbjct: 71  GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E 
Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPE+ I+ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPELDIDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ++ L  IL+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTHMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428

Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED P+ V +    + LTE QV  IL +RL  L  LE+ ++  E   LL     + 
Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S       I  E+ +++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571
            +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ GK   
Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600

Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              Y LP AG+   GR          GE +Q ++ +           Y     +   + +
Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       SE      +GK  + +   + +  V    G+  V +   N K + FS + + 
Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            M R   GVR     +G   +V+   I E  T +D    +   +++D+
Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 445/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 269/771 (34%), Positives = 431/771 (55%), Gaps = 98/771 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPV RRI+++M EMGL     ++KSARIVG+V+GK HPH
Sbjct: 15  YLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVGDVLGKYHPH 74

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+T++AE +L+ +D+
Sbjct: 75  GDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIAEEMLKDIDK 134

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   ++    EP V P+ FPNLLANG+SGIAVGMAT+IP HN++EIC+A +  I N
Sbjct: 135 DTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREICDAIVEYIRN 194

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P++++ +L++++ GPDFPTGGIIV   E I+++Y  GRG   +R +   E+       I+
Sbjct: 195 PDVTVRELMKHVKGPDFPTGGIIV-GVEGIIKAYETGRGRIILRGKVEFED-----NAII 248

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           + E+PY V+KS ++EKIA L+   ++  ++ +RDES  E +R+V+  K+  +D +L+++ 
Sbjct: 249 IREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKS-GVDKNLVLKK 307

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +++ + ++  + + +  L +   P+++ L  ++ E++ HRREV+ RR+++ ++  + R+ 
Sbjct: 308 LYLYTPLQITYSIMLLAL-VNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEKAEERIH 366

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +L+G  I   N+DE I++IR+   P   K  +++RFSL+E Q DA+L +RL+ L  +   
Sbjct: 367 VLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINRFSLSEKQADAVLQMRLQKLTSM--- 423

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR----------- 494
               E+D +L E E++D               +I+E+K I S    +             
Sbjct: 424 ----EIDGILKEYEELDK--------------KIKELKSILSSQEKMDEIIIKELEEIKK 465

Query: 495 -----RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
                RRT   E  + ++ T +   I+ E   ++I+  G+ + L        +   V  S
Sbjct: 466 NYGDDRRTKIVE--KYEEIT-EVDTIKDEENVLIITKDGYAKRLDESDFRVQRRGGVGTS 522

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            +  ++GD     +   + DRILL + DGKA+++ A  +      G+ + L   L    +
Sbjct: 523 GISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRFLRIEDE 582

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEI-----IANTRKGKTFLKVSSEEKMKLVVKV 656
           IV           +V   KG+  I+ ES       IA     K    ++S E +  V K+
Sbjct: 583 IVG----------IVPFGKGSVVILTESGYIKKVNIAEFENAKRSGILASPESVAFVKKL 632

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-------YKDGGISDVICFKICEG 708
            G  V +  EN +L+ F  +++PE  R  +GV+  S       + D G  D+I       
Sbjct: 633 DGKEVIIATENGRLVRFKAEEVPEYKRNARGVKAVSLDGDKIAWMDVGSEDLI------- 685

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRG--------GVGSLVPKGFPRSGKFL 751
           LT  ++      ++E   L   G +G          G LV   F +S K +
Sbjct: 686 LTLTENGYGKMTKTEEFRLTGRGAKGVTAHKVNEKTGKLVFAEFVKSDKLM 736


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GII   R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421
           R  IL+GL +A  NIDE+IA+I+    P            KP  V+ F            
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPD 434

Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527
            +    I  E+  VKE F        RRT   +    D + L  + +I +E   V +S+ 
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 545

Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+  SL S+           A   KE D +K  L A++ D IL  ST GK Y L    
Sbjct: 546 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 605

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E    
Sbjct: 606 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 665

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
             KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R     +G++L
Sbjct: 666 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 725

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++ ++  +  +I  K    +      G     + +D       RGG G +  +   R+GK
Sbjct: 726 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 781

Query: 750 FLSS 753
            +S+
Sbjct: 782 VVSA 785


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ KSARI+
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+RM+++
Sbjct: 71  GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E 
Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPE+ I+ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPELDIDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ++ L  IL+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428

Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED P+ V +    + LTE QV  IL +RL  L  LE+ ++  E   LL     + 
Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S       I  E+ +++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571
            +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ GK   
Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600

Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              Y LP AG+   GR          GE +Q ++ +           Y     +   + +
Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       SE      +GK  + +   + +  V    G+  V +   N K + FS + + 
Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            M R   GVR     +G   +V+   I E  T +D    +   +++D+
Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757


>gi|332306880|ref|YP_004434731.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/635 (41%), Positives = 366/635 (57%), Gaps = 65/635 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALID PE+SIE+L+EYI GPDFPT   I   R+ I E+YR GRG   +RAR  +E
Sbjct: 191 VNGCIALIDKPELSIEELMEYIPGPDFPTAAFI-SGRKGIEEAYRTGRGKIYMRARAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K R
Sbjct: 250 REDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +   ++L+  ++  + M+T F +NM  L   + P+V  L  ILK ++ HRREV+ RR+ F
Sbjct: 309 NESGEVLLNHLYSQTQMQTVFGINMVALDKTQ-PKVFNLLDILKAFVLHRREVVTRRTVF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419
            ++    R  IL+GL IA  NID IIA+I+    P    +S                   
Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEMLERAG 427

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LTE Q  AIL+LRL  L  LE  +I SE   LL    ++
Sbjct: 428 NDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAEL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+ ++++ F        RRT   E++ A      + +IE+E + 
Sbjct: 488 LHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIEREEVV 539

Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S  G+++  K +  +         SA   KE D ++  L A+T D IL  ST G   
Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             K Y LP   L S    G  I  ++ L  N+ I 
Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEENERIT 631


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 363/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     FKKSA
Sbjct: 9   VKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPFKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NGTSGIAVGMAT+IP H +
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+   P++++++L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V EIPYQV K++LIEKIAEL+  KRI  + D+RDES  +   ++   
Sbjct: 248 EIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLQHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  ++DE+I +IR+    D  +  ++++F+L+E Q  AIL+
Sbjct: 367 EFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFNLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+A   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEVKERFND----- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
           +RRT    V+   +    + +I +E I + ++++G+I+ L        K     +  +  
Sbjct: 482 KRRTEI--VAGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQKRGGRGIQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  +   T D IL  +  GK Y
Sbjct: 540 NEDDFVEHLITTSTHDTILFFTNKGKVY 567


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR+   P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR+   P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLIFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 263/749 (35%), Positives = 431/749 (57%), Gaps = 31/749 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N +V EN+    +   ++E YL YA+S I  RA+PD+RDG KPVHRRI++ M  +G+ 
Sbjct: 2   DNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGIT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSAR VGEV+ K HPHGD S+YD++VR+AQ F  RY L+ G GNFG+I+GD AA
Sbjct: 62  PDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+ +A  +L+ +D+  VDF   +++E+ EP V PS+FP LL NG++GIAVGM
Sbjct: 122 AMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ATSIP HN+ E+ +A + LID+ E S+E+L + I GPDFPTG  I+  R  I E Y  G+
Sbjct: 182 ATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKIL-GRAGIREGYLTGQ 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           G  ++R+   +E+  +G   +VV+EIPYQV K+RL+EKI EL+  K I  + +IRDE+  
Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E +RIV+  K R  +  +++  ++  + ++    + M  L  G  P+ + L  IL E++ 
Sbjct: 301 EGIRIVIELK-RDANASIVLNKLYKHTSLQESMSMIMIALVNGE-PKKLTLLQILNEYIK 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTE 425
           H++E++ RR+ F ++  + R  IL+GL IA  NIDEII IIR+  D  K  ++  FSL+E
Sbjct: 359 HQKEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQKLMDTFSLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++L  L+ LE  +I++E   L  +      +L++     N I  E+ E+KE 
Sbjct: 419 VQTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNVIKEELLEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
           ++       RRT   +    D    ++ +IE++ +T+ ++++G+ + +        K   
Sbjct: 479 YADE-----RRTQIVD---DDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--ID 595
             ++ L  +E D +K  ++  T D +L  +  GKA+ + A  +       + I ++  ++
Sbjct: 531 KGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIINFVN 590

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  ++I      D   +   L+ V+S+G    V+ SE  +N + G   +K+   +K+  
Sbjct: 591 LDKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIA 650

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGL 709
           + K  GD   ++   + + I F+ + +    R   GV+  + K  G  ++I  + + +G 
Sbjct: 651 IEKTNGDDDVLIVTRKGMSIRFNENDVRATGRQSIGVKAITLK--GDDEIISMQLVSKGK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             +  + + Y +        L  RGG G+
Sbjct: 709 ELLVVSKKGYGKRTGTDKYTLQTRGGKGN 737


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 373/621 (60%), Gaps = 55/621 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  L              EKEKID+       ++ +I   I+E++E+   +  
Sbjct: 420 LDMKLQRLTGL--------------EKEKIDT-------EFKEIEALIKELREVLEDNNK 458

Query: 492 L---------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           +                 +R T  E  R +   L + +I+ E I +  +N+G+++ +++ 
Sbjct: 459 IYEIMKKELLELKEKYNDKRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEAS 516

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
                      +SAL+  E D  +  + A T D I++ +  GK Y + A  +  LS +  
Sbjct: 517 KYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSR 576

Query: 587 GEAIQLLIDLNHNQDIVTAFV 607
           G  +  +I+L+  + +    V
Sbjct: 577 GRLLSNIINLSEGEKVRDTIV 597


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR+   P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/690 (37%), Positives = 399/690 (57%), Gaps = 44/690 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+GL     ++KSARIVG+ +GK HPH
Sbjct: 24  YIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLGSDKQYRKSARIVGDTMGKYHPH 83

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y ++VR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEARM+++  L+L  +D+
Sbjct: 84  GDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPAAMRYTEARMSKMTALMLADIDK 143

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D V+FR  ++E   EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+    + +IDN
Sbjct: 144 DTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVVNGVIRMIDN 203

Query: 210 ----------PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                      E  IE+L+  I GPDFPTG  I   R  I ++YR GRG  +V+A+  +E
Sbjct: 204 YMGENEEHEVRETEIEELMAIIEGPDFPTGATIY-GRYGIDQAYRTGRGKVKVKAKAEIE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IVVTEIPY V KS LIEK+A+L+  ++I  + DIRDES  +   ++    R 
Sbjct: 263 AMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDGITDIRDESDRNGISMVIELRRD 322

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++P +++  ++  + ++  F +NM  L   + P+V+ L  IL+E+L H++EV+ RR+ F 
Sbjct: 323 VNPTVILNQLYKYTQLQDTFSINMLALVDDK-PKVLNLKQILEEYLKHQKEVVTRRTQFE 381

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL  A  NID ++++IR   N  + K  ++    LTE Q  AI+ +RL
Sbjct: 382 LNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKDKLMEAIELTEIQAQAIVEMRL 441

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R+L  LE  +I  E   LL + E + S+L S  +  + I  EI EVK+ +      GRR 
Sbjct: 442 RALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGD----GRRT 497

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548
               +    D   L    I++E I V I+  G+I+ +   +          +  ++  E 
Sbjct: 498 DITIDEDEYDIEDL----IDEENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIED 553

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF 606
           D +K        + I+  +  GKAY +    +  +GR   G AI  L++L+ ++ I   F
Sbjct: 554 DFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVF 613

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF-LKVSSEEKMKLVVKVTG-D 659
               ++    L +V+ KG    ++++ +    N RKG    L ++ E+++  V + T  D
Sbjct: 614 PIKEFEDNTFLTMVTKKGQ---IKKTPLKDFRNIRKGGLIALSLNEEDELVDVHQTTSKD 670

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            + V   N + ++F    +  M R  +GVR
Sbjct: 671 AILVATRNGQGIMFDATDVRPMGRTARGVR 700


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR+   P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/569 (40%), Positives = 362/569 (63%), Gaps = 22/569 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSA
Sbjct: 9   VREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H +
Sbjct: 129 SKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++   
Sbjct: 248 EIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEI 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + ++T F +N+  L  G  P+V+ L   L  +L H++ V+ RR+
Sbjct: 308 RRDANAHVILNNLYKQTALQTSFGINLLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++D +I++IRN    +     ++ +FSLTE Q  AIL+
Sbjct: 367 AYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFSLTEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEIKERFND----- 481

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
           +RRT   E+  A   T++ + +IE+E I V +++ G+I        RS K     +  + 
Sbjct: 482 KRRT---EIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
               D ++  +   T D IL  S  GK Y
Sbjct: 539 TNGDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/626 (39%), Positives = 386/626 (61%), Gaps = 43/626 (6%)

Query: 4   DNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           DN    N++ E +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 3   DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+ID
Sbjct: 63  ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +G
Sbjct: 123 GDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  IVE+
Sbjct: 183 IAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++R
Sbjct: 242 YKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 300

Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L
Sbjct: 301 DESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
             +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++
Sbjct: 359 CLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLM 418

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + EVKE FS       RRT   E+  + ++   + +I  EP+ V +S++G+++      V
Sbjct: 479 LLEVKEQFSSP-----RRT---EIQESYESIDTEDLIANEPMVVSMSHKGYVK-----RV 525

Query: 539 DLSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580
           DL A   +             E D ++    A+T D +L ++  G     K Y +P  + 
Sbjct: 526 DLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           ++    G+AI  LI L  ++ I+   
Sbjct: 586 IA---MGKAIVNLISLAPDEKIMATL 608


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 364/605 (60%), Gaps = 19/605 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG+I+ S +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  E +
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I + +L HR+
Sbjct: 301 RLVVECK-KDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E 
Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEV 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ E +
Sbjct: 420 QAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKHELKQIAEQY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS----VDLSA 542
                   RRT        D+         ++P+ V+++ +G+I+ + + +    ++  A
Sbjct: 480 GDE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFIKQIPTPTRRSQINAIA 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLLIDLNHN 599
             FK+GD L   +   + D +   + +GK Y   A  L++  G    G A+  L  L   
Sbjct: 535 FAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKA-KLVAEAGAKEKGRAVNNLFPLPEE 593

Query: 600 QDIVT 604
           + IV 
Sbjct: 594 ERIVA 598


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 284/790 (35%), Positives = 440/790 (55%), Gaps = 70/790 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 11  INIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMDKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF D Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNP+I+I +L+EYI GPDFPT  II   R  I+++Y  GRG   +R+R  VE
Sbjct: 191 IDGCLALIDNPDITIPELMEYIKGPDFPTAAII-NGRAGIIDAYHTGRGKIYLRSRSHVE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   IVVTE+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++    +
Sbjct: 250 TDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRMVIELRK 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  S M+  F +NM  L   + P++  L   +  ++ HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYAQSQMQNVFGINMVALDNNQ-PRLFNLKDAIDAFVTHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR-- 420
            ++    +  +L+GL IA  NID II +I+    PK                  M++R  
Sbjct: 369 ELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVSTMLARAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q  AIL+LRL  L  LE  +I  E  +LL   E++
Sbjct: 429 TEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLLGLIEEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+ EV+E F        RR+   + S+ D       +I +E + 
Sbjct: 489 LRILMSTERLLEVIREELEEVRENFGDE-----RRSEILD-SKLDLTIAD--LITEEDVV 540

Query: 522 VVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++  +L  +          SA   K+ D ++  L A T D IL  S+ GK Y
Sbjct: 541 VTLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVY 600

Query: 574 TLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES- 629
            L    L  +GRG  G+ I  ++ L + + I     + + +    V  +  N  + + S 
Sbjct: 601 WLKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDKFVFMATANGTVKKTSL 660

Query: 630 EIIANTR-KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           E  +  R  G   L ++ ++++  VV+  G +H+ +  +  K++ F    +  M R  +G
Sbjct: 661 EQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGMGRTARG 720

Query: 687 VRLQSYKDGG--ISDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           VR     +G   I  ++  +    LT  ++  G+     ++ L G    RGG G +  + 
Sbjct: 721 VRGMKLPEGAKVIQMIVAEEDGSVLTATENGYGKRTAMEDHPLRG----RGGQGVISIQM 776

Query: 744 FPRSGKFLSS 753
             R+G  +S+
Sbjct: 777 SERNGAVVSA 786


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N +I+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R+R 
Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 NIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +I+N   P   K  +VSR            
Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +SN G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 288/793 (36%), Positives = 437/793 (55%), Gaps = 77/793 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KKSAR+V
Sbjct: 11  VNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF D Y+  + EP VFP++ PNLL NG++GIAVGMAT+IP HN++E+
Sbjct: 131 AHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNIPPHNMREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALID+P I I +L+E++ GPDFPT  +I      I E+Y  GRG   +RAR  VE
Sbjct: 191 VDACVALIDDPSIGIPQLMEHLPGPDFPTAAVI-NGATGIHEAYHTGRGRIYLRARSHVE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            + G G   +VVTE+PYQV K+RL+EKIAEL+  K++  + ++RDES +D   ++    R
Sbjct: 250 TDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMRMVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + M+  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ +
Sbjct: 310 GEVPEVILNNLYQHTQMQNVFGINMVALVDGQ-PRLLDLKQVLEAFLRHRREVVTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  +L+GL +A  NIDE+IA+I+    P                   M++R  
Sbjct: 369 DLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDEMLARAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q  AIL+LRL  L  LE+ ++ SE   LL   EKI
Sbjct: 429 AATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELL---EKI 485

Query: 462 DSLLN---SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           D LL+   S  +    I  E+ E++E F        RRT   E SR D  TL+  +I +E
Sbjct: 486 DDLLDILGSPDRLMRVIRDELLEMREQFGDE-----RRTEIIE-SRLD-LTLED-LITEE 537

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+         R+ K      SA  FK+ D +   +   T D IL  S+ G
Sbjct: 538 DVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           KAY L    L  G     G+ I  L+ L   + I          + L V    ++  V++
Sbjct: 598 KAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREYLEDLYVFMSTSSGTVKK 657

Query: 629 SEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG 684
           + ++  +R +    + V   +  +LV     D    V ++    K + FS +Q+  M R 
Sbjct: 658 TPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMGRT 717

Query: 685 ----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               +GVRL   +D  +  +I   + EG   I +      R+  D     G RGG G + 
Sbjct: 718 ACGVRGVRLA--EDQRVISLII--VDEGTVLIATENGYGKRTPPDDFPVHG-RGGQGVIA 772

Query: 741 PKGFPRSGKFLSS 753
            +   R+G  + +
Sbjct: 773 IQTGGRNGAVVGA 785


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N +I+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R+R 
Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +I+N   P   K  +VSR            
Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +SN G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I        RS       +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/625 (40%), Positives = 384/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++K+LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   E+  A +    + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSTEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/756 (34%), Positives = 407/756 (53%), Gaps = 61/756 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E +V  +++   +   YL YA+S I  RA+PD RDG KPVHRRI+ +M+E G D+   ++
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQS+YD+LVR+AQ F  R PL+ GQGNFG++DGD  AA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM + A  +L  +D++ +DF+D Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +ALIDNP+I+I++L+E++  PDFPTGGI++  R+    +Y  G+G   VR
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIML-GRQGARLAYHTGKGSVVVR 303

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R   EEV +    I+++EIPYQV K+ ++EKIA+L+  KRI  + D+RDES  +   V+
Sbjct: 304 GRVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVV 363

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++  ++  S ++  F  NM  L  GR P++M L   L+ ++A R EV+ 
Sbjct: 364 VELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGR-PELMNLKQFLEIFVAFREEVIS 422

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+ F +     R  +L GL IA  NIDE+I +IR    P     S  +           
Sbjct: 423 RRTKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPL 482

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             ++E Q  AIL LRL+ L  L   +I  EL  L    E   S+
Sbjct: 483 IALIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSI 542

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +  + +  E+  +K  F+       RRT   E++ ++     + +I++E + V +
Sbjct: 543 LRSRARVLDIMRTELTAIKAEFATP-----RRT---EIAESESDFEDEDLIQREDMVVTV 594

Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           S++G+I        R+ +      S +  K+ D +     A+T   +L  S+ G  Y L 
Sbjct: 595 SHQGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLK 654

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLLVVSSKGNAFIVE 627
              L   + +  G+A+  ++ L+H + I T          +DS   ++  + KG+    +
Sbjct: 655 VWRLPQSTPQARGKAMINILPLDHGEYITTVMPMPEDEASWDS-LHVMFATRKGSVRRNK 713

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            S+ +   R GK  +K   ++    +V V      D V +   N + + F + ++   S 
Sbjct: 714 LSDFVQINRNGKIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSS 773

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            K   ++  + G    +I   I   +    +  R+Y
Sbjct: 774 RKSTGVRGIRLGDDDKLIAMSIMRHVDVTPAEARAY 809


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/723 (38%), Positives = 411/723 (56%), Gaps = 52/723 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 7   EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++++EL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G+I+ + E I ++Y  GRG  ++R
Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 246 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L  +++H+  V+ 
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F LTE Q  A
Sbjct: 365 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++   K  
Sbjct: 425 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRD---KYG 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
           D  R   TF + S  D   L    I +E + V ++   +I+ +        +   V +  
Sbjct: 482 DERRTEITF-DASEMDIKDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L A  +  SGR   G AI  L+ +  ++
Sbjct: 537 MGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 596

Query: 601 DIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653
            I TA +     K    L + + KG   +V+++ +   AN RK      V+ +E  +L+ 
Sbjct: 597 RI-TAVIQVREFKPDRFLFLGTRKG---VVKKTPLAEFANIRKSG-LRAVNLDEDDELIG 651

Query: 654 VKVTGDHVAVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           VK T       GENR        K + F  D +  M R  +GVR  +  DG   +V+   
Sbjct: 652 VKFTD------GENRIMLGTRLGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMD 703

Query: 705 ICE 707
           I +
Sbjct: 704 ILK 706


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/723 (38%), Positives = 412/723 (56%), Gaps = 52/723 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 16  EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++++EL+L+ +D++ VDF D Y+  + EP+V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G+I+ + E I ++Y  GRG  ++R
Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMR 254

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 255 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L  +++H+  V+ 
Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F LTE Q  A
Sbjct: 374 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++   K  
Sbjct: 434 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRD---KYG 490

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
           D  R   TF + S  D   L    I +E + V ++   +I+ +        +   V +  
Sbjct: 491 DERRTEITF-DASEMDIKDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 545

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L A  +  SGR   G AI  L+ +  ++
Sbjct: 546 MGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 605

Query: 601 DIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653
            I TA +     K    L + + KG   +V+++ +   AN RK      V+ +E  +L+ 
Sbjct: 606 RI-TAVIQVREFKPDRFLFLGTRKG---VVKKTPLAEFANIRKSG-LRAVNLDEDDELIG 660

Query: 654 VKVTGDHVAVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           VK T       GENR        K + F  D +  M R  +GVR  +  DG   +V+   
Sbjct: 661 VKFTD------GENRIMLGTRHGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMD 712

Query: 705 ICE 707
           I +
Sbjct: 713 ILK 715


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/614 (40%), Positives = 378/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   ++ NP   ++K+LE++ GPDFPTGGII   +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + ++   + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  N+ I+   
Sbjct: 590 LISLAPNEKIMATL 603


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/764 (36%), Positives = 439/764 (57%), Gaps = 42/764 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL     ++
Sbjct: 6   EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 66  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  + LIDNPE+++  L+  I GPDFPTG  I+  +  I  +Y  GRG   VR
Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGKIVVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D +RIV
Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++++  ++  + ++  F + M  L +   P+V+ +  IL  ++ +++EV+
Sbjct: 304 VELK-RDANPNVVLNLLYKHTKLQDSFGVIMLAL-VNNEPRVLNIKEILSNYIDYQKEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ Q  
Sbjct: 362 TRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQAT 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +S  
Sbjct: 422 AILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
                RRT   +V   ++  ++  +I++E + + ++N G+I+ + + +          + 
Sbjct: 482 -----RRTKIEKV--VNEIDIED-LIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D ++  +   T   +L  +  G+ Y L A  +  +GR   G  +  LI +  +
Sbjct: 534 AMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPD 593

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVV 654
           + I T        K   L +++K    IV+++ I    N RK G   L +   +++  V 
Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNG--IVKKTHISEFKNLRKNGLIALSLKDNDELLKVK 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGL 709
              GD ++ +V +N   + F+   +  M R   GV+  + KD  ++  +C  I    E L
Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEEL 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I   G       ++    +  RGGVG +  K   ++GK   +
Sbjct: 710 LVISENGFGKRTPVSEY--KVQNRGGVGLITYKISEKTGKLTGA 751


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/635 (38%), Positives = 386/635 (60%), Gaps = 40/635 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+ F   +KKSARIVG+V+GK
Sbjct: 12  MKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSARIVGDVMGK 71

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VR+AQ F  RY LI GQGNFG++DGD  AA RYTE R++++A  +L 
Sbjct: 72  YHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLSKIAGEMLA 131

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN++E+  A + 
Sbjct: 132 DIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLREVVYALIH 191

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP+ S+  L+ +I GPDFPTGG IV  R  I  +Y  GRG   +RAR  +EE  RGS
Sbjct: 192 LIENPDASVTDLMNFIRGPDFPTGGYIV-GRSGIESAYSTGRGTITIRARSEIEEGRRGS 250

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+ TE+PYQV K++++E IAEL+ A R+  + +IRDES  E +R+V+  K + ++P +
Sbjct: 251 R-IIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELK-QGVNPQV 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +   + +ET + +   VL  G+ P+ + L   L++++ +R EV+ RR+ F ++  +
Sbjct: 309 VLNQLHKHTQLETTYGIINLVLVDGQ-PRTLTLKETLEQYINYRAEVIERRTRFELEQAE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  IL G+LIA  +IDE+IA+IR    P   + ++++RF L+E Q  AIL++RL+ L  
Sbjct: 368 KRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNRFGLSEEQARAILDMRLQRLTG 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE+ ++ SE   L +   ++  +L S  +  + I  E+RE+ EI+        RRT   E
Sbjct: 428 LEQEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDD-----RRTEILE 482

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG-----------DS 550
              + ++   + +I+ E + V+I+N G+I   K   + +  +  + G           D 
Sbjct: 483 ---SVESVRPEDLIQDEEVAVIITNNGYI---KRQPLSVYRMQRRGGKGSIGAETKSEDF 536

Query: 551 LKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +     A T D +++ +  GKA     Y +P   ++S    G  I  L+ L  N+ I  A
Sbjct: 537 VTDIFTASTLDYLMIFTDRGKAHWLRVYEIP---MVSKVARGRPIASLLQLEENERITEA 593

Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKG 638
              +S  T + +V++++  + +       +N R+G
Sbjct: 594 IPVESFGTDEYIVLATRNGSIVKTPLRAFSNPRRG 628


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I        RS       +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 378/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I        RS       +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 286/802 (35%), Positives = 437/802 (54%), Gaps = 87/802 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKSA
Sbjct: 16  VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE RM
Sbjct: 76  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 136 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D P+ S+E L+E I GPDFPT  II   R  I+E YR G+G   +RAR 
Sbjct: 196 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 254

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+  
Sbjct: 255 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 315 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV----- 418
           + F ++    R  +L+GL IA  NIDE+IA+I+    P            +P +V     
Sbjct: 374 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 433

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                               S + L+E Q  AIL LRL  L  LE+ +I +E + LL   
Sbjct: 434 KAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 493

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I +E
Sbjct: 494 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 545

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA H K+ D ++  + A T D +L  S  G
Sbjct: 546 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 605

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  +  S GR          GE I  ++ +   +D   ++V+ +T K  V
Sbjct: 606 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 663

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673
                NAF         +  +    + V  EE   LV V +T     + +  +  K++ F
Sbjct: 664 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 714

Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
              ++  M R  +GVR ++  KD  +  ++      G T + +    Y +  +     + 
Sbjct: 715 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 773

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +  +   R+GK + S
Sbjct: 774 GRGGQGVISIQVTERNGKVVRS 795


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/635 (38%), Positives = 383/635 (60%), Gaps = 52/635 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+++Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRVGIIDAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E        ++I++L+            E+REV E  +K  D
Sbjct: 420 LDMKLQRLTGLEREKIDTEF-------KEIETLIK-----------ELREVLEDNNKIYD 461

Query: 492 L------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +            G +R T  E  R +   L + +I+ E I +  +N+G+++ +++    
Sbjct: 462 IMKKELLELKEKYGDKRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYK 519

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
                   +SAL+  E D  +    A T D I++ +  GK Y + A  +  LS +  G  
Sbjct: 520 AQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRL 579

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  +I+L+  + +    V   +    +++ ++ KG
Sbjct: 580 LSNIINLSEGEKVRDTIVIKEFSPEKEVVFITKKG 614


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/685 (36%), Positives = 396/685 (57%), Gaps = 25/685 (3%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIGKLH 87
           RY+ YALS I  RA+PD+RDG KPV RRI+  M  +  L   A ++KSA++VG V+G+ H
Sbjct: 67  RYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVVGSVMGQYH 126

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y++LVR+AQ F  RYPL+ G GNFG++DGD AAA RYTE R+  ++  +L  +
Sbjct: 127 PHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRLAMLSSELLTEL 186

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +  V FR TY+    EPVV P++ P LL NGT+GIAVGMAT+IP H++ E+ +A +ALI
Sbjct: 187 GKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGELVDALVALI 246

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +NP++  + LL+++ GPDFPTGG I+  ++ + + Y  G+G  R+R  + +E++ RG   
Sbjct: 247 ENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKLEDLKRGGQQ 306

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+T IPY V KS L+ K  +L+  +++PL+ D+RDES +DVRIVL  K +  +P+L+M 
Sbjct: 307 IVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKDVRIVLELK-KDANPELVMA 365

Query: 328 SIFMLSDMETRFPLNMNVLSMGR------VPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++  + ++T F +N+  L   +       P+ + L  IL  +L  R +V+ +R    + 
Sbjct: 366 YLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFDVVTKRFEHELG 425

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438
            + RRV IL+G    Y  +DE+I IIR  +  +     +++RF L E QVDAIL ++L  
Sbjct: 426 ELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQVDAILEMKLYK 485

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L +LE   ++ EL    AE ++I  +L    + W  +  E+ E+K  ++      +RRT 
Sbjct: 486 LARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYND-----KRRTR 540

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
                  +     +A I  E   VVI+  GW++ ++    D S    +EGD++   L   
Sbjct: 541 IGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRVREVK-DPSTTRLREGDAVMAVLAGS 599

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----KL 614
               ++L S  G AY     ++ +  G+GE +Q     +  + +V+A   D+      KL
Sbjct: 600 LKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKL 659

Query: 615 LVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           + V+ +G     + E  +  +TR G+ + K    +++  V  VT  D +AV+ E    L+
Sbjct: 660 VGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALV 719

Query: 673 FSIDQIPEMS-RGKGVRLQSYKDGG 696
             + ++ E++  GKGV +    DGG
Sbjct: 720 CKVAEVNELAGPGKGVTVIKV-DGG 743


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 389/631 (61%), Gaps = 41/631 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A++ +EE       ++VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 AKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQV 428
            RR  F ++    +  +L+GL IA  NIDE+I +I+    ++D  K  +V+ F L+E Q 
Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKD-AKERLVANFGLSEIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +++L+++L+ L  LE ++++ EL+ LL+  K+  D LLN            +R +  I  
Sbjct: 423 NSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIRE 471

Query: 488 KSTDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
           ++ +LG      RRT         K ++   M +KE I V+++ +G+++ L  +      
Sbjct: 472 ETINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQG 530

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  
Sbjct: 531 TGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISE 590

Query: 593 LIDLNHNQDIVT----AFVYDSTCKLLVVSS 619
           LI+L   ++I+T        D  C LL  +S
Sbjct: 591 LINLGAQEEILTIKNSKDFTDDACLLLTTAS 621


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/569 (40%), Positives = 359/569 (63%), Gaps = 22/569 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   VEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADKGYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE++M
Sbjct: 69  RIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTESKM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ ++++ VD+RD Y+ ++ EP+V PS+FPNLL NGTSGIAVGMAT+IP H++
Sbjct: 129 SKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIPPHHL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A LAL DNP I+ E+L+E+I GPDFPTGGII+  R  I  +Y  G+G   +R+  
Sbjct: 189 GETIDAVLALADNPAITTEELMEHIEGPDFPTGGIIL-GRSGIRRAYETGKGSVLIRSVV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+V EIP+QV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 248 DIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +L+ +++  + M+T F LNM  L  GR P+V+ L  IL  +L H++ V+ RR+
Sbjct: 308 RRDASASVLLNNLYKQTAMQTSFGLNMLALVDGR-PKVLSLKEILFHYLEHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F +   + R  IL+GL IA  +ID IIA+IR     ++ +  +++ F+LTE Q  AIL+
Sbjct: 367 QFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E   L+   E++  +L +  +    I  E+ E+K+ FS      
Sbjct: 427 MRLQRLTGLERDKIEEEYQALVKLIEELRYILANEYRILEIIKEEMLEIKDRFSD----- 481

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
           +RRT   E++       + + +I  E   + +++ G+I+ L +++          +  + 
Sbjct: 482 KRRT---EITTGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRGGRGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             E D ++  L+  T D IL  +  GK Y
Sbjct: 539 TNEDDFVEHLLYTSTHDTILFFTNKGKVY 567


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +
Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  ++
Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ F +     R  IL+GL+IA  NID++I IIR+       K  ++ RFSL+E 
Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +
Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           S       RRT   ++ + +     + +I++E + + +++ G+I+ + S           
Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++  L   T   +L  +T GK Y + A  +  +GR   G  +  ++ L
Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589

Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644
             ++ I T   +             KL +V     K    I +   I  N R+G   L+ 
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
                   ++ VT D  A+         F+   +  M R   GV+  S ++G ++  +C 
Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699

Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I    E L  +   G  Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I        RS       +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/603 (40%), Positives = 371/603 (61%), Gaps = 24/603 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  +D++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+IDNP+++ E+L+E I GPDFPTGG I   RE I+++Y  GRG  ++RA+
Sbjct: 186 LSEVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+ 
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +++  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ R
Sbjct: 305 ELKKDENPTIILNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  N+DE+IA+I+    P   K  ++ RF L++ Q  AI
Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F     
Sbjct: 424 LDMRLHRLTGLEREKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G +R +   +  AD  +L+  ++E E + V IS+ G+I        R+ +      + +
Sbjct: 479 -GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
             KE D ++    A T D ++  +  GK Y L    +  +GR   G+AI  L++L  N+ 
Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595

Query: 602 IVT 604
           I T
Sbjct: 596 ITT 598


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 281/784 (35%), Positives = 430/784 (54%), Gaps = 71/784 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GII   R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV  E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421
           R  IL+GL +A  NIDE+IA+I+    P            KP  V+ F            
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527
            +    I  E+  VKE F        RRT   +    D + L  + +I +E   V +S+ 
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547

Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+  SL S+           A   KE D +K  L A++ D IL  ST GK Y L    
Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E    
Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
             KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R     +G++L
Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++ ++  +  +I  K    +      G     + +D       RGG G +  +   R+GK
Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783

Query: 750 FLSS 753
            +S+
Sbjct: 784 VVSA 787


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              +R T  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +  + A T D I++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV 607
           +    V
Sbjct: 592 VRDTIV 597


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N +I+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R+R 
Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +I+N   P   K  +VSR            
Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +SN G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/550 (41%), Positives = 350/550 (63%), Gaps = 20/550 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+A   ++  +L +  +    I  E+ E+KE F+       RRT    V+   +    
Sbjct: 419 QSLVALIAELKDILANEARVLEIIREELNEIKERFNDE-----RRTEI--VTSGLETIED 471

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +IE+E I + +++ G++        RS K     +  +   E D ++  +   T D I
Sbjct: 472 EDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTI 531

Query: 564 LLLSTDGKAY 573
           L  S  GK Y
Sbjct: 532 LFFSNKGKVY 541


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 261/635 (41%), Positives = 366/635 (57%), Gaps = 65/635 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALID PE+SIE+L+EYI GPDFPT   I   R+ I E+YR GRG   +RAR  +E
Sbjct: 191 VNGCIALIDKPELSIEELMEYIPGPDFPTAAFI-SGRKGIEEAYRTGRGKIYMRARAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   IVV EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K R
Sbjct: 250 REDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +   ++L+  ++  + M+T F +NM  L   + P+V  L  IL+ ++ HRREV+ RR+ F
Sbjct: 309 NESGEVLLNHLYSQTQMQTVFGINMVALDKTQ-PKVFNLLEILQAFVLHRREVVTRRTVF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419
            ++    R  IL+GL IA  NID IIA+I+    P    +S                   
Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDMLERAG 427

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LTE Q  AIL+LRL  L  LE  +I SE   LL    ++
Sbjct: 428 NDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAEL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+ ++++ F        RRT   E++ A      + +IE+E + 
Sbjct: 488 LHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIEREEVV 539

Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S  G+++  K +  +         SA   KE D ++  L A+T D IL  ST G   
Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             K Y LP   L S    G  I  ++ L  N+ I 
Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEANERIT 631


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/607 (40%), Positives = 363/607 (59%), Gaps = 35/607 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++ M E+G      +KK
Sbjct: 19  ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE 
Sbjct: 79  SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE IL  +D++ VDF   ++E   EPVV P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  +A+IDNPEI   +LL Y+ GPDFPT G I   +E I E+Y  GRG  R+RA
Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIY-GKEGIKEAYLTGRGSIRMRA 257

Query: 255 RW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           +   V+E   G   I+VTEIPY V K+RLIE IA+L+  K+I  + D+RDES  D +RIV
Sbjct: 258 KAEIVDE--NGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIV 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K ++ + ++++  +F  + ME+ F +N N+  +   P  + L   +  ++ HR+EV+
Sbjct: 316 IELK-KAANANVILNQLFKHTQMESTFGVN-NIALVDNTPMTLSLKETIGYFIKHRQEVV 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL GLLIA  NID+ + IIR   N D+ K  ++ ++ L++ Q  
Sbjct: 374 TRRSQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSR 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  +I  E  +L+ E   ++ +L S +   + I  E+ ++K  +   
Sbjct: 434 AILDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDE 493

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT   E +      + + +I  E + V ISN G+I        R+ +   V + 
Sbjct: 494 -----RRTKIVESA---GEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIV 545

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQLLID 595
            +  KE D +     A T D IL  S  GK Y+L      PA    S +  G+AI  LI+
Sbjct: 546 GMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAA---SRQARGKAIINLIN 602

Query: 596 LNHNQDI 602
           +   + I
Sbjct: 603 IEPGEAI 609


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/764 (36%), Positives = 439/764 (57%), Gaps = 42/764 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL     ++
Sbjct: 6   EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 66  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  + LIDNPE+++  L+  I GPDFPTG  I+  +  I  +Y  GRG   VR
Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGKIVVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D +RIV
Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++++  ++  + ++  F + M  L +   P+V+ +  IL  ++ +++EV+
Sbjct: 304 VELK-RDANPNVVLNLLYKHTKLQDSFGVIMLAL-VNNEPRVLNIKEILSNYIDYQKEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ Q  
Sbjct: 362 TRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQAT 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +S  
Sbjct: 422 AILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
                RRT   +V   ++  ++  +I++E + + ++N G+I+ + + +          + 
Sbjct: 482 -----RRTKIEKV--VNEIDIED-LIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQ 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D ++  +   T   +L  +  G+ Y L A  +  +GR   G  +  LI +  +
Sbjct: 534 AMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPD 593

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVV 654
           + I T        K   L +++K    IV+++ I    N RK G   L +   +++  V 
Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNG--IVKKTHISEFKNLRKNGLIALSLKDNDELLKVK 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGL 709
              GD ++ +V +N   + F+   +  M R   GV+  + KD  ++  +C  I    E L
Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEEL 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I   G       ++    +  RGGVG +  K   ++GK   +
Sbjct: 710 LVISENGFGKRTPVSEY--KVQNRGGVGLITYKISEKTGKLTGA 751


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/617 (39%), Positives = 377/617 (61%), Gaps = 33/617 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ +  Y++S I +RA+PD+RDG KPVHRRI+++M++ G    A F KSARI+G+V+GK
Sbjct: 33  MEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSARIIGDVMGK 92

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YDS+VRLAQ +  RY L+ GQGNFG++ GD  AA+RYTEAR+ + AE +L 
Sbjct: 93  YHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARLDKPAEELLA 152

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDFRD ++  + EP+V P+K PNLL NG  GIAVGMATSIP+HN+ E+ +A + 
Sbjct: 153 DIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNLGELVDATVE 212

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNPE +++ LL+++ GPDFPTG I+      + ++Y+ GRG   +RA   +EE  RG 
Sbjct: 213 LIDNPEATVDDLLKHVKGPDFPTGAIVYGG-APMWQAYQTGRGSVTIRAVANIEETKRGR 271

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDL 324
             IVVTE+PY V K+ LIEKIAEL+  K+I  + D+RDESA  +VR+V+  K  +  P  
Sbjct: 272 HRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIELKKDAY-PKK 330

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++ L+ ++T F  NM  L  G+ P+++ L  IL E++ HRR V+ RR+ F ++  +
Sbjct: 331 VLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRTEFELKKAE 390

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G  IA  +IDE+I  IR    +++ +  +++RF L+E Q  AIL ++LR L  
Sbjct: 391 ARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTG 450

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE   I++EL  LLA  EK+  +L   ++  N I  E+ E+KE +    D  R +    E
Sbjct: 451 LEREAIENELRELLALIEKLKGILADEQEILNIIKNELIEMKEKYG---DQRRSKMINHE 507

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS-------ALHFKEGDSLKI 553
           + +       + +I +E   V++++  +I R+L S     +        +  KE D ++ 
Sbjct: 508 LGKFS----DEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEH 563

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            + A T D +L  +  G     KAY +PA +L   +  G A   L+ L   + I     +
Sbjct: 564 MIPAGTHDWLLFFTNRGRVFRLKAYEVPAASL---QAKGVAAVNLLQLQPEEKITAIIKF 620

Query: 609 DSTCK----LLVVSSKG 621
           +   K    L + + KG
Sbjct: 621 EKDAKDDGYLFMATVKG 637


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              +R T  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +  + A T D I++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV 607
           +    V
Sbjct: 592 VRDTIV 597


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RI
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV
Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q 
Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  
Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481

Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
           +     RRT     EV     +   + +IE+E + + ++N G+I+ + +           
Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583
            +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G
Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + 
Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +  ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  + 
Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702

Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/668 (37%), Positives = 404/668 (60%), Gaps = 33/668 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      KKS
Sbjct: 7   NIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +++ +++D VD+R  ++E   EP V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 127 LSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDN E  +E L+E+I GPDFPT   I+ + E I E+Y  GRG  +VRA+
Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGT-EGIKEAYTTGRGRIKVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EEV +G   I++TEIPYQV K+RLIEKIAEL+  K++  + D+RDES  E +RIV+ 
Sbjct: 246 ASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++  ++  + +E  F + M  +  G  P+V+ L  +L  +L H+++++ R
Sbjct: 306 LK-RDANANVVLNKLYKHTQLEDTFGVIMLAIVNGE-PKVLNLKEVLTHYLDHQKDIITR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL IA  N+DE+I +IR   N    K  ++  F+L+E Q  AI
Sbjct: 364 RTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +++ E ++L+        +L + +   N I  E+ E+KE +     
Sbjct: 424 LDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              RRT   E++RA      + MI +E + + +++ G+I+ L + +          ++AL
Sbjct: 482 ---RRT---EITRAIGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAAL 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             +E D ++  + + + D +L  +  G+ Y L    +   R    G AI  LI L+ N+ 
Sbjct: 536 TTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNET 595

Query: 602 IVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
           +         +DS  K LV+++K       +     +TRK    + +S  E  +L+ VK+
Sbjct: 596 VAATIPVGRQFDS--KYLVLATKNGIIKKTQLSQFESTRKS-GLIAISIREDDELIKVKL 652

Query: 657 TGDHVAVV 664
           T +   ++
Sbjct: 653 TDEDSEII 660


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 279/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ KSARI+
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+RM+++
Sbjct: 71  GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E 
Sbjct: 131 SHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPE+ ++ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPELDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ++ L  IL+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428

Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED P+ V +    + LTE QV  IL +RL  L  LE+ ++  E   LL     + 
Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+ +++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571
            +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ GK   
Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600

Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              Y LP AG+   GR          GE +Q ++ +           Y     +   + +
Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       SE      +GK  + +   + +  V    G+  V +   N K + FS + + 
Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            M R   GVR     +G   +V+   I E  T +D    +   +++D+
Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 287/768 (37%), Positives = 414/768 (53%), Gaps = 90/768 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLSES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPEI ++ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPEIDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRIRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +     R 
Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAMLGAAGA 428

Query: 408 ---RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED PK V  +   + LTE Q   IL +RL  L  LE+ ++  E   LL   E I 
Sbjct: 429 EASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL---EVIA 485

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L++   +  +++   IRE  E+ S   + G  R T    S  D   L   +I  E + V
Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELVSVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+++        + +      SA   KE D ++     +T D +L  ++ GK + 
Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG+   GR          GE +Q ++ +    D    FV+ +T    V  + 
Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYAD--GQFVFFATKNGTVKKTP 658

Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
               AF +   +I  N  +G   + V   +  +         + +   N K + F  D++
Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGLTDGQR--------DILLFASNGKTVRFGEDKV 710

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             M R   GVR      G   +V+   + E      SAG   + +E+D
Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGIEDENEDD 750


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/607 (39%), Positives = 381/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + + + + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN E S+E+++++I GPDFPT GII   ++ I+++YR GRG  ++R
Sbjct: 188 HSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIY-GKKGIIDAYRTGRGRIKIR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E++E+K  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIKAKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 271/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFP   +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I +E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I      D  +    +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/562 (41%), Positives = 354/562 (62%), Gaps = 22/562 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL     F+KSA IVG+V+  
Sbjct: 17  MKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKSAGIVGKVMQD 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YDS+VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEARM ++   +L 
Sbjct: 77  FHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEARMAKITLEMLA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+    EPV+ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ +  + 
Sbjct: 137 DIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHNIGEVIDGVIM 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP ++ ++L++ I GPDFPTG  I+  R+ I  +YR GRG  ++RA+  +E    G 
Sbjct: 197 MIDNPNVTPDELMKVIKGPDFPTGAKIM-GRDGIRAAYRTGRGSIKIRAQATIETKNNGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+V EIP+QV K++L+EKIAEL+  K+I  + D+RDES    +RIV+  K +  +P++
Sbjct: 256 SAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK-KDANPNV 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + M+  F + M  L +   P+V+ L  +L  +L H+++V+ RR+ + ++  +
Sbjct: 315 ILNQLYKFTQMQESFGIIMLAL-VNNQPKVLNLAQVLFYYLEHQKDVITRRTKYELKKAE 373

Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  I++GL IA  ++DE+I II   R  ++ K  +V+ F+LTE Q +AI+ +RLRSL  
Sbjct: 374 ARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQAEAIVEMRLRSLTG 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +++ E  +LLA+ + + S+L   K+    I  E+ EVK+ F+       RRT    
Sbjct: 434 LEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADP-----RRTVISN 488

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
            +  D     + +I++E + V I+N+G+I        RS +     ++A+  KE D +K 
Sbjct: 489 EAAGDFDI--EDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTKEEDFVKH 546

Query: 554 ALHAHTTDRILLLSTDGKAYTL 575
              A T   +L  +  GKAY L
Sbjct: 547 LFVASTHHYLLFFTNQGKAYRL 568


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 377/620 (60%), Gaps = 29/620 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   +++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +   +KKSAR+V
Sbjct: 4   ISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARVV 63

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+ AA RYTEARM+++
Sbjct: 64  GDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSRL 123

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ V+FR  Y+   +EP V P++ PN+L NG+SGIAVGMAT+IP HN+ E+
Sbjct: 124 AGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGEV 183

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+DNPE +I +L+++I  PD PTG  I   +  ++E+YR GRG F++R+R  VE
Sbjct: 184 IDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLK-GVLEAYRTGRGSFKIRSRLDVE 242

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              RG   IV+ E+PY + K+ L+EKIA L+  K+I  + D+RDES  + +RIV+  K  
Sbjct: 243 TRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKKG 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++  D+++  ++ L+ +ET F +NM  +   R PQ++ L  +L+ +L HR+EV+ RRS  
Sbjct: 303 AIS-DVIINKLYKLTALETSFGINMMAVVNNR-PQLLNLKQVLEYFLEHRKEVILRRSRH 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR+     + +  ++S FSL++ Q  AIL++R
Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLISNFSLSQVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  +E  ++  E   LL + E + S+L +      +I  E++E+K+ +S       R
Sbjct: 421 LQRLTNMEREKLMQEYRELLQQIEFLKSILENIDILKGEIKKELQEIKKTYSTP-----R 475

Query: 496 RTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWI-RSL-------KSHSVDLSALHFK 546
           RT   E    D  +++   +I    + V +S  G+I R+L       K     ++  +  
Sbjct: 476 RTQILE---QDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLEYYHQQKRGGKGIAGANVG 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVT 604
           + D +           I L S  GK+Y L A  +  G     G  I+ L+ L++ + I T
Sbjct: 533 DKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGVHIKNLLPLDNEEYIAT 592

Query: 605 AFV---YDSTCKLLVVSSKG 621
           A     +      L V+ KG
Sbjct: 593 ALSERNFHQRHYFLFVTKKG 612


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 279/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ KSARI+
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+RM+++
Sbjct: 71  GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E 
Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPE+ ++ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPELDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ++ L  IL+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428

Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED P+ V +    + LTE QV  IL +RL  L  LE+ ++  E   LL     + 
Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+ +++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571
            +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ GK   
Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600

Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              Y LP AG+   GR          GE +Q ++ +           Y     +   + +
Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       SE      +GK  + +   + +  V    G+  V +   N K + FS + + 
Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            M R   GVR     +G   +V+   I E  T +D    +   +++D+
Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/599 (40%), Positives = 354/599 (59%), Gaps = 23/599 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDE+I IIR+    K     M  RF LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL +      +L+  +   + I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++ L        K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
           K+ D ++    A T   +L  ST GK Y L    L     H  G AI  L+ L   + I
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/623 (38%), Positives = 375/623 (60%), Gaps = 27/623 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++  S+   +   +L+YA+S I  RA+PD+RDG KPVHRR+++AM ++GL     ++KS
Sbjct: 8   NIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEVIGK HPHGD +VYD+LVRLAQ F  R+PL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 68  ATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A  +L+ ++ D V+F   ++E   EP V P++FPNLL NG  GIAVGMAT IP HN
Sbjct: 128 LTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALI++PE+  E L  YI GPDFPTGGI+V +R  I E+ R GRG  RVRA+
Sbjct: 188 LGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTR-GIREAIRTGRGSVRVRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
              E++      IVVTE+PYQV K++L++KIAEL+  ++I  + D+RDES    +RIV+ 
Sbjct: 247 AHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++ P +++ ++F  + M+  F +N+  L  G VP+ +     L+ ++AH+ EV+ R
Sbjct: 307 LKREAV-PKVVLNNLFKHTQMQQSFGVNLVALVDG-VPKTLSYKEALRHYIAHQFEVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+   +     R  IL+GLLIA  N+DE++  I   RN +  +  +V RF L+E Q  AI
Sbjct: 365 RTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKRFRLSERQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+LRL+ L  LE  +++ +  +L+ + E ++ +L    + +  I  E+ E+K  ++    
Sbjct: 425 LDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADESKVYGIIREELLEIKAAYADE-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSAL 543
              RRT       A+     + +I +E + + IS+ G+++S+   S        V ++ +
Sbjct: 483 ---RRTAITAQEGAEFEV--EDLIAEEEMVISISHEGYLKSVPIGSFRKQGRGGVGVAGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             KEGD ++      T   +L  +  GK Y L    L  +     G  +  L+ L   + 
Sbjct: 538 ELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAAKGRHVANLLPLAPGER 597

Query: 602 I---VTAFVYDSTCKLLVVSSKG 621
           I   ++   +D    LL  + +G
Sbjct: 598 IAAVISTRDFDEAEYLLFATRRG 620


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 283/768 (36%), Positives = 414/768 (53%), Gaps = 90/768 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG++DGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPEI ++ L+EYI GPDFPT GII      I+  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPEIDVDGLMEYIPGPDFPTAGII-NGTAGIIAGYRTGRGRVRIRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +     R 
Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P      M++R                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSMLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + LTE Q   IL +RL  L  LE+ ++  E   LL   E I 
Sbjct: 429 EASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLL---EVIA 485

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L++   +  +++   IRE  E+ S   + G  R T    S  D   L   +I  E + V
Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELISVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+++        + +      SA   KE D ++     +T D +L  ++ GK + 
Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG+   GR          GE +Q ++ +    D    FV+ +T    V  + 
Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYAD--GQFVFFATKNGTVKKTP 658

Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
               AF +   +I  N  +G   + V   +  +         + +   N K + F  D++
Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGLTDGER--------DILLFASNGKTVRFGEDKV 710

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             M R   GVR      G   +V+   + E      SAG S + +E+D
Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGSEDENEDD 750


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 400/694 (57%), Gaps = 36/694 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   + + Y+ YA+S I  RA+PD+RDG KPVHRR+++ M E+G  +   +K
Sbjct: 4   QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD++VR+ Q F  RYPLI GQGNFG++DGDSAAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++A+ +L  +D++ V+F   ++E   EP V P+K PNLL NG+SGIAVGMAT+IP 
Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +ALI++P I   +LL+ I GPDFPTG  I   RE I ++Y  GRG  ++R
Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIY-GREGIKDAYLTGRGSIKIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+  + E G G   I+VTEIPY V K++LIE IA+L+  K++  + D+RDES  D +RIV
Sbjct: 243 AKAEITEEG-GRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K +  + ++L+  ++  + MET F +N N+  +   P+ + L   L+ +L HR+EV+
Sbjct: 302 IELK-KGANANVLLNQLYRHTQMETTFGVN-NLALVDNQPRTLSLKETLEYYLKHRQEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL GLL+A  NID+ + I+R   + D  K V +S++ L+E Q  
Sbjct: 360 TRRSQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E   L+     +  +L S +   + I  E+ E++  +   
Sbjct: 420 AILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGDG 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT   E   +D   + + +I  E + V ISN G+I        R+ +   + + 
Sbjct: 480 -----RRTIIKE---SDGEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIM 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
            +  KE D +     A T D +L  +  G+ Y L    +   S +  G+AI  L+ L  N
Sbjct: 532 GMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPN 591

Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-V 654
           +  V A +    +D    L++ + +G       S      R G   + +  +E  +L+ V
Sbjct: 592 ES-VNAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTG--IIAIGLDEGDELISV 648

Query: 655 KVT--GDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           K+T  G  V +   N K   FS  ++  M R  G
Sbjct: 649 KLTNGGQEVLIATRNGKANRFSESEVRPMGRQAG 682


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGII   +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + ++   + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  N+ I+   
Sbjct: 590 LISLAPNEKIMATL 603


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 279/758 (36%), Positives = 436/758 (57%), Gaps = 38/758 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E  V  V++   + + YL YALS I  RA+PD+RDG KPVHRRI+ AMSE G D+   +
Sbjct: 1   MESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+ AA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  +D++ VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 121 EVRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+C A LA I NP+IS+ +L+  + GPDFPT G I  S + I E+YR G+G  R+
Sbjct: 181 PHNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGS-DGIAEAYRTGKGLIRL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  +E+ G G   I++ E+PYQV K +LIE+I EL+  K+I  + DIRDES  E +R+
Sbjct: 240 RARTFLEQRG-GREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRV 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  +   L   +L   +F  ++M+  + +N+  +   R P+++ L  +L E+L HRREV
Sbjct: 299 VIQLRKDELAQPIL-NQLFAHTNMQVTYGINLVAIVNNR-PELLSLKDLLTEFLKHRREV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ + ++  + R  IL GL IA  ++D+IIA+IR+   P   +  +V RF+LTE Q 
Sbjct: 357 IVRRTLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVERFTLTEVQA 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE  +I  E + LL +  +   +L +    +  I  ++ ++++ +  
Sbjct: 417 QAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILANEALVYQLIEADLIDLRDRYGD 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 RRT    +    + TL+  +I  E + V +S++G+I        RS +      
Sbjct: 477 P-----RRTEI--IPETAELTLED-LIPDEDMVVTVSHQGYIKRNPLNLYRSQRRGGKGR 528

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
           + +  KE D +     A T +  L+ S  G+ Y L    +  G     G+AI  L++   
Sbjct: 529 TGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPSARGKAIVNLLNFGS 588

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLV- 653
            + + T      +     L++ + +G   I++++E++  +R +    +  + +E  +LV 
Sbjct: 589 QEKLTTILPIREFVPEHYLVMATKRG---IIKKTELMNFSRPRSGGLIACTLDEGDELVS 645

Query: 654 VKVT-GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V +T G+    +G +  K++ F+   + +M R  +GVR  +  +      +     EG  
Sbjct: 646 VALTDGNKEVFLGTSLGKIIRFAEQDVRDMGRSARGVRGMTVAEDDCIVGMEILSAEGAI 705

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              +A     R+ ++    L KRGG G L  +   R+G
Sbjct: 706 LTVTANGYGKRTRHEEY-RLQKRGGSGLLALRITDRNG 742


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 410/710 (57%), Gaps = 42/710 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  +L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+ + A  KKSA
Sbjct: 78  LKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSA 137

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG++DGD AAA RYTEARM
Sbjct: 138 RIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMRYTEARM 197

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++ G+ ++ VDF D Y+  + EPVV PS+FPNLL +G+SGIAVGMAT+IP HN+
Sbjct: 198 SKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATNIPPHNL 257

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A  AL  NPEI++ +L+EYI  PDFPTGGII  +++ ++E+Y  GRG   +R++ 
Sbjct: 258 GETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIF-NKKGLIEAYSTGRGSITIRSKA 316

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            ++E+  G   I+VTEIPY+V+K+ ++EKI+ELI  K+I  + D RDES  D +RIV+  
Sbjct: 317 HIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIRIVIDI 376

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K +S  P++++ ++F L+ +++ +  NM  L +   P+++ L   L+ +L H+ EV+ RR
Sbjct: 377 K-KSFVPEIVLNNLFKLTKLQSNYSFNMIAL-VNNEPKLLNLKACLEVYLKHQIEVVSRR 434

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
             F ++    R  IL+GL I   NID +I II   + + + +  +   F+L+E Q  AI+
Sbjct: 435 LKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQAFNLSEIQTKAIV 494

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  L   ++  EL+ +         +L       N I  E++E+K  +    D 
Sbjct: 495 DMKLGRLTGLAIEKMNEELNEVHERIANYIKILGDHNLLINLIIEELQEIKNAYG---DA 551

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
            R    + E+S  D     + +I K  I + ++N G+I+ L        +   V +S   
Sbjct: 552 RRSDINWDELSSID----NEDLIPKRDIVITLTNNGYIKRLDIEEYREQRRGGVGVSTTK 607

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI---QLLIDLNHNQD 601
             + D+++  L A+T   +L+ +   K Y +    +  G    + I    ++  +  N+ 
Sbjct: 608 TYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPVGTKQSKGIPIVNVIPSIQKNEK 667

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEKM---KL 652
           ++       Y     LL  + KG   IV+++  I   +  R GK    +  ++      L
Sbjct: 668 VIKILPINEYKQNEYLLTATKKG---IVKKTPTILFESINRNGKIAFAIRDDDDKLIDAL 724

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +VK   D + +   N K+  F  ++I  M R     KG+++   +D  +S
Sbjct: 725 IVK-DEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVS 773


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/689 (37%), Positives = 391/689 (56%), Gaps = 62/689 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN + S  L   ++K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 9   DNSTPSGGL-PSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 67

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 68  NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 127

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG  GI
Sbjct: 128 DPAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 187

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A++A+++NP +++E+L++ + GPDFPTGG+I+  R  I  +Y
Sbjct: 188 AVGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 246

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+   EE+ +  W ++VTEIPYQV KS +IEKIAE++  KR+  + DIRD
Sbjct: 247 ETGRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRD 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R   PD+++  ++  S ++T F  NM  L+ G+ P+ M L  +LK 
Sbjct: 307 ESDRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGK-PEQMNLSDMLKA 365

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------- 416
           ++A R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR    P          
Sbjct: 366 FVAFREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMER 425

Query: 417 -------------------MVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                              MV     + L+E Q  AIL+LRL+ L  +   +I+ EL+ +
Sbjct: 426 NWPARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 485

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  +    +  E+ E++E F+       RRT   E   AD    ++ +
Sbjct: 486 GAEISDYLDILRSRARIQEIVRNEMLEIREEFATP-----RRTEIIE-GGADFD--EEDL 537

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I        R+ +      S +  K+ D +     A+T   +L  
Sbjct: 538 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 597

Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLL 615
           S+ G     K + LP G   S    G+A+  ++ L   + I +           +   ++
Sbjct: 598 SSRGICYKMKVWRLPLGGPTS---RGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVM 654

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             + +G     + S+ +   R GK  +K+
Sbjct: 655 FATVRGTVRRNKLSDFVNINRNGKIAMKL 683


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 381/608 (62%), Gaps = 32/608 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + + + + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN E S+E+L+++I GPDFPT GII   ++ I+++YR GRG  ++R
Sbjct: 188 HSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIY-GKKGIIDAYRTGRGRIKIR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIRAKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIVT 604
              + I+ 
Sbjct: 593 QAEEKIMA 600


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/594 (40%), Positives = 369/594 (62%), Gaps = 25/594 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDIR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +      G  R T  
Sbjct: 435 GLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T
Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESIST 601


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 281/768 (36%), Positives = 436/768 (56%), Gaps = 70/768 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    + KK
Sbjct: 5   EQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF   +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+     A I+N +I IE+L+ +I  PDFPTGGII    E + +++  GRG   +RA
Sbjct: 185 NLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGIIY-GYEGVRDAFMTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VEEV  G  CI++TEIPYQV K+ +I+K A+L+  K+I  +  IRDES  + +RIV 
Sbjct: 244 KSSVEEVN-GRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  SL P++++ ++F  + +++ F +N   L  GR PQ++ L  I+  ++ HR EV+ 
Sbjct: 303 ILKKDSL-PNVVLNTLFKHTALQSTFSVNNIALVKGR-PQMLNLKDIIYNFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  IL+GL+IA  NIDE+I++IR   N ++ +  +V RF L+E QV A
Sbjct: 361 RRTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVERFQLSEIQVKA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  LE+ +++ E D L+   E +  +L+S  ++   I  E+ E+KE +    
Sbjct: 421 IVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRMEIIQTELLEIKEKYGDD- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSA 542
               RR+   E++        + MI  E + + IS+ G+I+   LK +       V   A
Sbjct: 480 ----RRS---EINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKIQNRGGVGQKA 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              ++ D L+          IL  +  GK      + +P G+  S    G AIQ L++L+
Sbjct: 533 STTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLMNLD 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D + AF+        +V +  N   +    ++  T+KG   KT L+  S  ++  + 
Sbjct: 590 PD-DRINAFI--------LVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGIN 640

Query: 655 KVT---GDH----VAVVGENR--------KLLIFSIDQIPEMSRG----KGVRLQSYKDG 695
            ++   GD     V   GEN+        K L F    I  M RG    KG+ L S KD 
Sbjct: 641 AISVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDE 700

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSE--NDLLG----WLGKRGGVG 737
            I  +IC K  +  T +  + + Y +    +D+ G     +  RGG G
Sbjct: 701 VIG-MICVKNPQEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKG 747


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/728 (36%), Positives = 418/728 (57%), Gaps = 28/728 (3%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG+V+GK 
Sbjct: 18  EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ A L+L 
Sbjct: 78  HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI  A L 
Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+  P+ +IE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +  G   
Sbjct: 198 LLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E VRIVL+      +  
Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSATTKKNIK 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            ++  +   +D+E  F +NMN++ +   PQV  L  +LK+WL +R+  L RR    +  +
Sbjct: 314 KIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRLQTSLDKV 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR L K+E
Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSDELQTRFTLSEIQAEAILNIRLRKLAKIE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E +IK E   L  E+E ++  LNS  +  N +  E +++   F  S     RR+      
Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILADFGDS-----RRSKVIAAE 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           +A +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    ++  ++
Sbjct: 489 KA-QALEEKDLMPSERVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ S  G  
Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAEYFLIASESGKG 607

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM 681
           F++   ++I N   GK         K    +    DH  +A+  E R +++        +
Sbjct: 608 FVIPAEDLITNKVTGKNIFDADDVFKF---IPFDQDHKMLAISSEGR-IIVRDFSSFALL 663

Query: 682 SRGKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGV 736
            +GKG   +RL   K   +  +  F+  + LT   +AG+ + R  S+N    +  K  G 
Sbjct: 664 KKGKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGG 719

Query: 737 GSLVPKGF 744
           G L+P+GF
Sbjct: 720 GVLLPQGF 727


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/696 (36%), Positives = 395/696 (56%), Gaps = 62/696 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F   ++KSA
Sbjct: 5   IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 65  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 125 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP+I++++++E I GPDFPTGGII+  R  +  +Y  GRG   +RA+ 
Sbjct: 185 SEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+   
Sbjct: 244 DIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            + +  ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ ++A R EV+ RR+
Sbjct: 304 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVAFREEVVSRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM-------- 417
            + ++    R  +L GL +A  NIDEIIA+IR    P+           P M        
Sbjct: 363 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 422

Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L S
Sbjct: 423 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 482

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  + +  E+  ++E F+       RRT F   S   ++   + +I  E + V +S+ 
Sbjct: 483 RVRIMHIVKDELSALREEFATP-----RRTVFGFGSAEMES---EDLIAPEDMVVTVSHS 534

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     K + 
Sbjct: 535 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 594

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G A+  ++ L   + I T           S   ++  +++G     + 
Sbjct: 595 LPLGTPQS---RGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKL 651

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           S+ +   R GK  +K+  E+++ L V+   +H  VV
Sbjct: 652 SDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 686


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/594 (39%), Positives = 366/594 (61%), Gaps = 25/594 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+
Sbjct: 78  YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L 
Sbjct: 138 DINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLH 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++RAR  +EE G G 
Sbjct: 198 LSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  + +
Sbjct: 257 QRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDVR-KDANAN 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L E+L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKQALVEYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  +  K  M +   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++ +L   +     +  E+ ++KE F      G  R T  
Sbjct: 435 GLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L++++ I T
Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELDNDETIST 601


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I        RS       +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/594 (40%), Positives = 369/594 (62%), Gaps = 25/594 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDIR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +      G  R T  
Sbjct: 435 GLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T
Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESIST 601


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   + A  +++  +L    + ++ +  E+ E+KE ++    
Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYAD--- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              +R T  E  R +   L + +I+ E I +  +N+G+++ +++            +SAL
Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSAL 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           +  E D  +    A T D I++ +  GK Y + A  +  LS +  G  +  +I+L+  + 
Sbjct: 532 NTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEK 591

Query: 602 IVTAFV 607
           +    V
Sbjct: 592 VRDTIV 597


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/614 (40%), Positives = 381/614 (62%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+GL    A+KK
Sbjct: 10  KNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   + ++LE+I GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIY-GKVGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L  +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTAMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   ++++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDELNGILKSEDRLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + +    + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    EGD ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 277/762 (36%), Positives = 438/762 (57%), Gaps = 44/762 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++ E+GL     ++
Sbjct: 5   EGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  + LIDNPE ++ +L+  I GPDFPTG  I+  +  I  +Y  G+G   VR
Sbjct: 185 HNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIM-GKAGIRAAYETGKGKIIVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A   +EE   G   I+VTEIPYQV K++L+E IA+L+  K+I  + D+RDES  D +RIV
Sbjct: 244 ANAEIEE-ENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P +++  ++  + ++  F + M  L +   P+V+ L  IL+ ++  ++EV+
Sbjct: 303 IELK-RDANPSVVLNLLYKHTKLQDTFGIIMLAL-VNNEPKVLNLKQILENYVEFQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  NIDE+I+IIRN +     K  ++ RF L+E Q  
Sbjct: 361 TRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L  LE  +I+ E + L+ + E + S+L S ++  + I  E+ E+K  +S  
Sbjct: 421 AILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYSDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
               R+      V+  D     + +I++E + + +++ G+I+ + + +          + 
Sbjct: 481 ----RKSKIEKIVNEID----IEDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D ++  +   T   +L  +  G+ Y L A  +  +GR   G  +  LI +  +
Sbjct: 533 AMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIEPD 592

Query: 600 QDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLV 653
           + I T        K   L + + +G   IV+++ +    N RK G   + +   +++  V
Sbjct: 593 EKIQTVLTVTDEKKEGFLFMGTKQG---IVKKTPLSEFKNLRKNGLIAISLKDGDELLKV 649

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EG 708
               GD ++ VV +N   + F+   +  M R   GV+  + K+  I+  +C  I    E 
Sbjct: 650 KNTYGDANIMVVTQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIA--VCMDIAVDGEE 707

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  I   G  Y +        L  RGGVG +  K   ++GK 
Sbjct: 708 LLVISENG--YGKRTPIAEYKLQNRGGVGLITYKISEKTGKL 747


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/646 (39%), Positives = 378/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/611 (39%), Positives = 378/611 (61%), Gaps = 35/611 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDE+I II++    K     +V  F L+E Q +
Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVLNFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ EL  LL+  K+  D LLN            +R +  I  +
Sbjct: 424 SVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDILLNP-----------VRIINIIREE 472

Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +LG      RRT         K ++   M +KE I V+++ +G+++ L  +       
Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               LS+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L
Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591

Query: 594 IDLNHNQDIVT 604
           ++L   ++I+T
Sbjct: 592 LNLGDQEEILT 602


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/604 (41%), Positives = 375/604 (62%), Gaps = 26/604 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+IDNP+++ E+L+E I GPDFPTGG I   RE I+++Y  GRG  ++RA+
Sbjct: 186 LTEVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  E +RIV+
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  +P +L+  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ 
Sbjct: 305 ELK-KDENPTILLNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  N+DE+IA+I+    P   K  ++ RF L++ Q  A
Sbjct: 363 RRTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F    
Sbjct: 423 ILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             G +R +   +  AD  +L+  ++E E + V IS+ G+I        R+ +      + 
Sbjct: 479 --GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  KE D ++    A T D ++  +  GK Y L    +  +GR   G+AI  L++L  N+
Sbjct: 535 MKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANE 594

Query: 601 DIVT 604
            I T
Sbjct: 595 KITT 598


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 362/605 (59%), Gaps = 19/605 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG+I+ S +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  E +
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I   +L HRR
Sbjct: 301 RLVVECK-KDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E 
Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEV 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ + +
Sbjct: 420 QAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS----VDLSA 542
                   RRT        D+         ++P+ V+++ +G+I+ + + +    ++  A
Sbjct: 480 GDE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIA 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLLIDLNHN 599
             FK+GD L   +   + D +   +  GK Y   A  L++  G    G A+  L  L   
Sbjct: 535 FAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKA-KLVAEAGAKEKGRAVNNLFPLPEE 593

Query: 600 QDIVT 604
           + IV 
Sbjct: 594 ERIVA 598


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/690 (37%), Positives = 409/690 (59%), Gaps = 29/690 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM  +GL     +KKS
Sbjct: 9   NIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VGEV+GK HPHGD ++YD+ VRLAQ F  RYPL+ GQGNFG IDGD AAA RYTE R
Sbjct: 69  SRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF   Y+E + EPVV PSKFPNLL NG +GIAVGMAT++P HN
Sbjct: 129 MQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +IS+++L++++ GPDFPTG  I+   E I ++Y  GRG   VRA 
Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIM-GLEGIKQAYHTGRGKITVRAV 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE    +  I+VTEIPYQV K+ LI KI ELI  KRI  + D+RDES  + +RIV+ 
Sbjct: 248 ANIEEHNNKTR-IIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P++++ +++  + M+T F + +N+  +   P+V+ L  ++  ++ H+R+V+ R
Sbjct: 307 LK-RDANPNIILNNLYKHTQMQTTFGV-INLALVNGEPKVLNLKELIGHYVEHQRDVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILN 433
           R  F ++  + R  I++GLL A  +IDEII IIR +    +  ++ RF  T+ Q ++IL 
Sbjct: 365 RCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYSDAQEKLMERFGFTKIQAESILE 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L+ LE  +++ E ++L+ E  ++  +L + +   N I  E+ E+KE F       
Sbjct: 425 MRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGDD---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
            RRT   E+         + +I++E + + ++ +G+I+ + S +  +         AL  
Sbjct: 481 -RRT---EIKPNFDEIEIEELIKEEDVVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTT 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           KE D +       T   IL  +  G+ Y L A  +  G+    G+ I  L++L H + + 
Sbjct: 537 KEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVN 596

Query: 604 TAF-VYDS-TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
               V D+ + + L++++K         E+    RK   K    V  +E +++ V    D
Sbjct: 597 AVIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVDDDELIQVRVSTVED 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
              +V +    + F +  I E+ R G+GVR
Sbjct: 657 SAMLVTKKGLAIKFELSDIREIGRTGQGVR 686


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/770 (34%), Positives = 439/770 (57%), Gaps = 55/770 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 SIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR   ++D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                RRT     EV     +   + +IE+E + + ++N G+I+ + +            
Sbjct: 483 -----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGR 584
           +  +   + D +K  +   T D +L  +  GK Y                +P  NLL G 
Sbjct: 534 VQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-GI 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
              E IQ +I +    +    +++ +T K  V  +   AF    S I +N   G   + +
Sbjct: 593 DSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAISL 644

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGISD 699
             ++++  VV   G+   ++G +    + F  + + +M R     +G+RL+   D  +  
Sbjct: 645 KEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVGA 703

Query: 700 VICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            I  +  E L   ++  G+    SE  + G  GK     ++  K  P +G
Sbjct: 704 AILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/649 (38%), Positives = 397/649 (61%), Gaps = 38/649 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++N  +V++   + + Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G ++   
Sbjct: 2   LSQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM +++  +L  ++++ VDF   Y++  SEP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    +++ID+P ++ E L++ I GPDFPT G I+   E + E+YR GRG  +
Sbjct: 182 PPHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFIL-GHEDVQEAYRTGRGIIQ 240

Query: 252 VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +RA+  VE   R S   IV+ EIPYQV K++LIEKIA LI  K+I  + D+RDES  D +
Sbjct: 241 MRAKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGM 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K  ++   +++  ++ ++ M++ F + M  +  G+ P+++ L  +L +++ HR+
Sbjct: 301 RIVIDLKREAV-AGVVLNQLYKMTAMQSSFGIIMLAIVGGQ-PKILTLREVLDQFIDHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           E++ RR  F ++  + R  IL+GL IA  N+DE+I II+   N  + K  ++ RF+ ++ 
Sbjct: 359 EIVTRRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIERFTFSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I +E + +LA+  ++  +L S  +    I  E+ EVKE +
Sbjct: 419 QAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSEVEILKIIRAELIEVKENY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT    +++    +++  ++E E + V +S+ G+I        RS +    
Sbjct: 479 DDP-----RRTEI--IAKTKDLSIEDLIVE-EDMVVTVSHSGYIKRNAVSLYRSQRRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
             + +  KE D ++    A T   IL+ +  GK Y L    +  G     G+AI  L+ L
Sbjct: 531 GKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAARGKAIVNLLQL 590

Query: 597 NHNQDIVT-----AFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKG 638
              + ++T      FV D   K ++ ++K    +V+++E++  AN R+G
Sbjct: 591 APEERVMTILPVKEFVED---KYIIAATKNG--VVKKTELMAYANPRQG 634


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/639 (40%), Positives = 378/639 (59%), Gaps = 66/639 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN EI+I++L+EYI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYKTGRGKIYMRSKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E E   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+ 
Sbjct: 247 EIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 307 CK-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL +A  NIDEII +IR    P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 425 ERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+  VKE F+ +     RRT   E++ A      + +I +
Sbjct: 485 IAELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      +A   K+ D ++  L A+T D IL  ST 
Sbjct: 537 EDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTR 596

Query: 570 G-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           G     K Y LP   L S    G+ I  ++ L  N+ I 
Sbjct: 597 GRMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 632


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 251/627 (40%), Positives = 381/627 (60%), Gaps = 29/627 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V  V L   + + YL Y++S I  RA+PD++DG KPVHRRII+ M  +GL     
Sbjct: 4   IYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGP 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSAR+VG+V+GK HPHGD S+YD+ VRLAQ F  RYPL+ GQGNFGNIDGDSAAA RY
Sbjct: 64  YRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++ + +L+ +++D VDF+  ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++
Sbjct: 124 TELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNM 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    ++ IDN EI+I++L+  I GPDFPTG  I+  RE I E+Y+ GRG  +
Sbjct: 184 PPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIM-GREGIKEAYKTGRGKIQ 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           VRA   +EE  +    IVV EIPYQV KS LI KIAEL+  K I  +  IRDES  + +R
Sbjct: 243 VRAVAEIEE-EKNKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I +  K R  +P++++  ++  + M+T F + +N+  +  VP+++ L  ++  ++ H+  
Sbjct: 302 IAIDLK-RDANPNVVLNKLYKNTQMQTTFGI-INLALVNGVPKILNLKELISYYVDHQIN 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  I++GL IA  NID II I+   RN+D+ K      F LTE Q
Sbjct: 360 VVTRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++R+R L  LE  ++  E   L+    +   +L + ++  + I  E+ E+++ F 
Sbjct: 420 GQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
              DL  RRT     S A +  L+  +I++E + + ++  G+I+ +        K     
Sbjct: 480 ---DL--RRTVIK--SAAGEIDLED-IIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           +SAL  +E D +       T D IL  +  G+AY L A  +   S +  G AI  +++L+
Sbjct: 532 ISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLS 591

Query: 598 HN---QDIVTAFVYDSTCKLLVVSSKG 621
            N   Q I+    YD    +++ +  G
Sbjct: 592 ANEKVQSIIPVREYDPNLNIVMATKDG 618


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 382/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L+ ++ I+   
Sbjct: 582 A---MGKAIVNLISLDPDEKIMATL 603


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 383/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   E+  A +    + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 275/729 (37%), Positives = 413/729 (56%), Gaps = 77/729 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSARIV
Sbjct: 14  VSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKKSARIV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPH D +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM+++
Sbjct: 74  GDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKI 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D V++   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP HN+ EI
Sbjct: 134 AHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPHNLFEI 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LA ID+ +ISIE+L++YI GPDFPT  II   ++ I E+YR GRG   +RAR  VE
Sbjct: 194 IDGCLAYIDDDKISIEELMKYIPGPDFPTAAII-NGKQGIEEAYRTGRGKICIRARAIVE 252

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E   G   IVV+EIPYQV K+RLIEKIA+LI  KRI  +  +RDES +D   ++    R
Sbjct: 253 VEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRIIIGIKR 312

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ ++  F +NM  L+ G+ P++  L  IL  ++ HR++++ RR+ F
Sbjct: 313 DAVAEVVLNNLYSMTQLQVSFSINMVALNNGQ-PKIFSLKEILSAFICHRQDIITRRTIF 371

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            ++    RV IL+ L++A  NI+ II + RN + P                         
Sbjct: 372 ELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQCREV 431

Query: 414 ----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
               +P        +   R+ LTE QV AIL+LRL +L  LE  ++  E   LL +   +
Sbjct: 432 HHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLTKIVDL 491

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +LN  ++    I  E+  +++ +        RRT   E++      + + MI KE + 
Sbjct: 492 LRILNEPERLMEVIREELNYIQKQYKDP-----RRT---EITTISSNLVIEDMINKENVV 543

Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S +G+++    +  D         SA+  KE D +   L A+T D ILL S+ G   
Sbjct: 544 VTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMY 603

Query: 571 --KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624
             K Y LPA    + RG  G  I  L+ L  N+ I T      Y+  C + + ++ G   
Sbjct: 604 WMKVYQLPA----ASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCNVFMATASGT-- 657

Query: 625 IVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPE 680
            V+++ +IA +R +    + V+  E  +L+ V VT   + V +     K++ F   Q+  
Sbjct: 658 -VKKTALIAFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRS 716

Query: 681 MSR-GKGVR 688
           M R   GVR
Sbjct: 717 MGRTATGVR 725


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 270/743 (36%), Positives = 413/743 (55%), Gaps = 56/743 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75
           V+ + L     ERYL +ALS I  RA+PD+RDG KPV RRI++AM   + L   A ++KS
Sbjct: 4   VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+GK HPHGD ++Y+++VR+AQ F  RYPL+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 64  ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ +    V  R  ++    EPVV P++FPNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A + LID P   +E +LE +I GPDFPTGG ++ +RE ++E YR G G   +R 
Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +E    G   IV+T IPY + K+ L+EKIAE I A ++P L D+RDES ++VRIVL 
Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDEVRIVL- 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369
              R  DP+  M  +F  + ++TRF +N+  L     P+V     + L  +L+ +L  R 
Sbjct: 299 ELRRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           EV+ RR  + ++ ++RR+ IL+G    +  +DE I IIR           ++ RF L + 
Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHRFQLDDV 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L +LE   I+ EL+    +  ++ +LL     +W  I  E++ +K+ F
Sbjct: 419 QADAILETKLYKLSRLEIEAIRQELEEKERQAAELRALLADEAARWGLIREELKAIKKQF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +     RRT         +   Q+A I  E + V+++  GW++  +S++ D+ ++  +
Sbjct: 479 ADA-----RRTVIAGPDEGFEYN-QEAYIVDEDVYVIVTRDGWVKRQRSYT-DVQSIRVR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD++   L   T   +   +  G+ YT    +L S  G+G+ +Q L D +  + +V   
Sbjct: 532 EGDTVGWVLPGSTRATVGFFTNYGRCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVV 591

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESE-------IIANTRKGKT------------------ 640
           V+D       V   +    + E  E       ++A TRKG+T                  
Sbjct: 592 VFDERALPRPVPEPEVEPALFENGEQEAPRVHVVAVTRKGQTLRIPIDGFREPSTKNGRL 651

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           F+++   +++  V    GD +V +      +LIF + QIP + S  KGV   + + G   
Sbjct: 652 FMRLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIPPVKSAAKGV--IAMRLGRGD 709

Query: 699 DVICFKIC----EGLTWIDSAGR 717
           +V+ F +     EGL    S GR
Sbjct: 710 EVLGFTLASAAREGLEVETSRGR 732


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/625 (40%), Positives = 381/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG SGI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/599 (40%), Positives = 353/599 (58%), Gaps = 23/599 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++ L        K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
           K+ D ++    A T   +L  ST GK Y L    L     H  G AI  L+ L   + I
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 362/579 (62%), Gaps = 23/579 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNT---PQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           KE F+       RRT    V+   +    + +IE+E I V +++ G++        RS K
Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                +  +   E D ++  +   T D IL  S  GK Y
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/651 (38%), Positives = 377/651 (57%), Gaps = 65/651 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+  R P +M L  I++ ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIEAFIDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               ++S          + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+       R+T+  E   +D     + +I +E + + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVIT 530

Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K SH                KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRL 590

Query: 576 PAGNL----LSGRG----------HGEAIQLLIDL----NHNQDIVTAFVY 608
               L     + RG           GE I  ++ L    + NQ+IV    Y
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFTTAY 641


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 396/668 (59%), Gaps = 33/668 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 19  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 79  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 139 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 199 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VRIV+  + +  +  
Sbjct: 258 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 316

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 317 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLRKA 375

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 376 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 435

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F      G  R T  
Sbjct: 436 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 489

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I        RS       +  ++  E D + 
Sbjct: 490 QLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 548

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T      
Sbjct: 549 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIAVKD 608

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   ++
Sbjct: 609 LESEEHYLVFATKRG--IVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDILI 666

Query: 665 GENRKLLI 672
           G +   LI
Sbjct: 667 GTSHASLI 674


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/579 (39%), Positives = 362/579 (62%), Gaps = 23/579 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNT---PQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           KE F+       RRT    V+   +    + +IE+E I V +++ G++        RS K
Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                +  +   E D ++  +   T D IL  S  GK Y
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/616 (39%), Positives = 384/616 (62%), Gaps = 36/616 (5%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N+ N N    ++++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+ 
Sbjct: 3   ENLLNQN----QDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNN 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDG
Sbjct: 59  LGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SGI
Sbjct: 119 DGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP H++ E+ +  L +++N   ++E+++EYI GPDFPTGGII   ++ I+E+Y
Sbjct: 179 AVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIF-GKKGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  ++RA+  +E+       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++RD
Sbjct: 238 RTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRD 296

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES +D +R+V+  K  ++  D+++ ++F  + ME+ F + M  ++  + P+V  L  +LK
Sbjct: 297 ESDKDGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLK 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVS 419
            +L HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +I+N  D P  +  +V+
Sbjct: 355 LFLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVA 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E+
Sbjct: 415 KFGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+K  F        +     E+         + +I  E + V I++RG+I+ + S   +
Sbjct: 475 LEIKNKF--------KVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 526

Query: 540 LS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                     A+   + D ++    ++T D ++ ++  G     K Y +P G   S    
Sbjct: 527 KQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAK 583

Query: 587 GEAIQLLIDLNHNQDI 602
           G+A+  LI L  ++ I
Sbjct: 584 GKAVVNLIQLQPDEKI 599


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 385/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP  +++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAI-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RFSL+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+
Sbjct: 415 RFSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS       RRT   E+  + ++   + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFSSP-----RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 396/668 (59%), Gaps = 33/668 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VRIV+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I        RS       +  ++  E D + 
Sbjct: 489 QLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T      
Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIAVKD 607

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   ++
Sbjct: 608 LESEEHYLVFATKRG--IVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDILI 665

Query: 665 GENRKLLI 672
           G +   LI
Sbjct: 666 GTSHASLI 673


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 380/614 (61%), Gaps = 36/614 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   A 
Sbjct: 4   LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA RY
Sbjct: 64  YKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT+I
Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + EI +A + LID+P+  + ++L++I GPDFPTGGII   +  I E+Y  GRG  +
Sbjct: 184 PPHRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIY-GKNGIKEAYETGRGRIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  D +R
Sbjct: 243 IRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIR 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++  ++++  +F  + ME+ F + +  +   + P++  L  +L  +++HR+ 
Sbjct: 302 VVVELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLALFISHRKS 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NIDEI+A+IR+   PK     ++ +F+L+E Q
Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEKFNLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +I++E   L+ E E + S+L S +     I  E+ EVKE FS
Sbjct: 420 AQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEELLNKIIKEELLEVKEKFS 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  +R T  E    D  ++  + +I  E + V +S+RG+++ +   + +       
Sbjct: 480 T------KRLTAIE---EDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526

Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
            G   KI+ + H            T D I+ ++  G+ Y L    +   S    G+A+  
Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 587 LISLAPDEKIMATI 600


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 384/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   E+  A +    + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L+ ++ I+   
Sbjct: 582 A---MGKAIVNLISLDPDEKIMATL 603


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 271/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +V+R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDV-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
           K Y L    L L+ R   G+ I  ++ L   + I      D  + +  +  + G+  + +
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656

Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
            S +  AN R  G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R 
Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/574 (41%), Positives = 357/574 (62%), Gaps = 31/574 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G+     +KKS+RIV
Sbjct: 13  VDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSSRIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+AAA RYTE+RM+ +
Sbjct: 73  GDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRMSAI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 133 ALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LIDNP+ +++ L+  I GPDFPTGG+I+  RE I ++Y  GRG   VRA    E
Sbjct: 193 IDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRGSITVRAVTHFE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES      V+    R 
Sbjct: 252 ELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVIELRRD 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P +++ ++F  + ++T F + +N+  +   P+V+ L   L+ +L H+R+V+ RR+ + 
Sbjct: 312 VRPQVVLNNLFKHTALQTSFGV-INLALVNGEPKVLTLRETLEHYLNHQRDVVRRRTQYD 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  ++DE+I++IR+    D+ +  ++S F L+E Q  AIL++RL
Sbjct: 371 LAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAILDMRL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I++E   L+    ++ ++L   K   + I  EI E+KE F        RR
Sbjct: 431 QRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEIKERFGDD-----RR 485

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGDSLKIAL 555
           T    +  A+    ++ +I    + + I++RG+I+ L      LS  H  + G      +
Sbjct: 486 T---RIVNAEGEISEEDLIPVHDVVIAITHRGYIKRLP-----LSTYHSQRRGGRGMTLI 537

Query: 556 HAH------------TTDRILLLSTDGKAYTLPA 577
           +AH            T D +L  +  G+ Y + A
Sbjct: 538 NAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKA 571


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 24  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 84  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 144 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 204 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 263 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 321

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 322 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 380

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 381 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 440

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 441 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 492

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 493 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 552

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 553 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 612

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 613 DLESEDNFLVFATK 626


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/709 (37%), Positives = 395/709 (55%), Gaps = 61/709 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E+G      ++KSAR V
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD  AA RYTE RM + 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +D+D VDF+D Y+ +D EP V P +FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S+E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLL-GRSGARKAYTEGRGSCIIRAKTHVE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E+ R  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES    VR+V+  K R
Sbjct: 240 ELRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELK-R 298

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++  +F  + M+T F  NM  L+ GR P+ + L G L  +++ R EV+ RR+++
Sbjct: 299 DATPDVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLYGFLSNFISFREEVVARRTAY 357

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR                             D
Sbjct: 358 LLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLID 417

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S +
Sbjct: 418 DPTHRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRE 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVKE+F+       RRT   + S        + +IE+  + V I+  G+
Sbjct: 478 RIMQIISDELREVKELFAVP-----RRTEIVDWS---GDMEDEDLIERAEMVVTITQSGY 529

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     LS +  K+ D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 530 IKRTPLEDYRAQKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLP 589

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
           L GR   G+AI  ++ +     I      D         +++  +S G       S+   
Sbjct: 590 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTN 649

Query: 634 NTRKGKTFLKVSSE-EKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQI 678
               GK  +K   E E M+L+  ++ G  D V +  ++ + + F  D +
Sbjct: 650 VKSNGKIAMKFEGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDV 698


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGII   +  I+ESY+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIESYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S ++    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + +    + +I  EP+ V IS +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSISYKGYVK-----RVDLKAYEKQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/682 (37%), Positives = 400/682 (58%), Gaps = 34/682 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD+RDG KPVHRRI++AM E+ ++  + +KKSAR+VGEV+GK HPH
Sbjct: 53  YLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLVGEVLGKYHPH 112

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEARM+++AE +L  +++
Sbjct: 113 GDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKIAEEMLIDINK 172

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D+R  ++E   EP V P++ PNLL NGT+GIAVGMAT+IP HN+ E+ +  +ALIDN
Sbjct: 173 DTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGELSDGIIALIDN 232

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +ISI++L+ +I GPDFPTGGII   +  I  +Y+ GRG  RV A+  +    +G   IV
Sbjct: 233 RDISIDELITHIKGPDFPTGGIIY-GKSGIYSAYKTGRGKVRVSAKTEIITDKKGRQSIV 291

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMES 328
           +TE+PYQV K+ LI++I EL+  K I  + D+ D S  E +RIV+  K +  + ++++  
Sbjct: 292 ITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIK-KGEEAEIVLNK 350

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +   +D++T F + M  L +   P+++ L  IL+++L HR +V+ R++ F +     R  
Sbjct: 351 LLKFTDLQTTFGIIMLAL-VNNAPKILNLKEILEKYLEHRYDVITRKTIFDLNKAKDRAH 409

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL  A  +IDEII+IIR        K  ++++F  TE Q DAIL++RL  L  L   
Sbjct: 410 ILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEIQTDAILDMRLHRLTGLARE 469

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E D L+     ++ +L   ++++  I  E+ E+K+ +      G  R T  E  R 
Sbjct: 470 EIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKY------GDARRTSIENDRY 523

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHA 557
           +     + +I+ E + V I+ RG+ +  SL S+         +S     E D LK    A
Sbjct: 524 EINI--EDLIKNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTA 581

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD----ST 611
            T D +++ S  GK Y++    +  +S +  G+ I  +I+L+ N+ I      D      
Sbjct: 582 KTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDN 641

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG---DHVAVVGEN 667
             L+ ++  G A   + SE     R GK  +     E+++K V   +G   D + +  + 
Sbjct: 642 RDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKG 701

Query: 668 RKLLIFSIDQIPEMSR-GKGVR 688
              + F  + I  M R   GVR
Sbjct: 702 GMAVRFKEEDIRSMGRTAAGVR 723


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/718 (35%), Positives = 411/718 (57%), Gaps = 46/718 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  HIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NP++++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++   
Sbjct: 248 EIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + ++T F +NM  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANSKVILNNLYKHTALQTNFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FSL+E Q  AIL+
Sbjct: 367 AYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ E+KE F+   D  
Sbjct: 427 MRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEIKERFN---DER 483

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
           R       +   D     + +I +E I + ++++G+I+ L        K     +  +H 
Sbjct: 484 RTEIVIGGIEEFD----DEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIV 603
            E D ++  L   T D +L  +  GK Y      +   GR   G  I  L++L+ ++ I 
Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIINLLELDKDEWIN 599

Query: 604 TAFV----YDSTCKLLVVSSKG---------NAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           T       +D    L   + +G          A I     I  + R+G   + V   +  
Sbjct: 600 TIIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISVKLTDGS 659

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           K        H+ V  +N  L+ F    +  M R   GV+  + +DG   +V+  +I E
Sbjct: 660 K--------HIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDG--DEVVGMEILE 707


>gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 261/703 (37%), Positives = 415/703 (59%), Gaps = 51/703 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   V+
Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL+ L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
               R+T    V++ ++  L+  +++ E + V +++ G+I+ +        K     +  
Sbjct: 481 ----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GHGE 588
           +  +E D ++      T DR+L  +  GK Y+L   ++  +GR             G GE
Sbjct: 534 ISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGE 593

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  +I L  +QDI   +V   T K ++  +    F          + K    + ++ EE
Sbjct: 594 KVTAVIPLKKSQDI--KYVVMCTKKGIIKKTSIEEF---------RSIKRNGIIAITLEE 642

Query: 649 KMKLV-VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
             +L+ VK+T G+   ++G  R   I F+   I  M R  KGV
Sbjct: 643 SDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/770 (35%), Positives = 425/770 (55%), Gaps = 118/770 (15%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALIDNP++++++L+E+I GPDFPT GII   R  IVE+YR GRG   +RAR  +E
Sbjct: 191 VNGCLALIDNPDLTVDELMEFIPGPDFPTQGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           +  + G   I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES  E +R+V+  + 
Sbjct: 250 QDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +PD+++ ++F  + +ET F +NM  L  G  P+ + L  +L  ++ HRREV+ RR+ 
Sbjct: 309 RGENPDVIINNLFAQTQLETVFGINMVALINGE-PKTLNLKEMLDAFVRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408
           + ++    R  IL+GL +A  NIDEII +I+                             
Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLAMLERA 427

Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            ED  +P        +    + L+  Q  AIL+LRL  L  LE  ++++E   +L   EK
Sbjct: 428 GEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL---EK 484

Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           I  LL+     ++  Q+  +  E+ EI S+  D   RRT   E++ + +      +I++E
Sbjct: 485 IADLLDILGDPERLMQVIRD--ELAEIVSQYGD--ERRT---EITSSRRDLTIADLIDEE 537

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+ ++                +A   K+ D ++  L A++ D IL  S  G
Sbjct: 538 DLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKG 597

Query: 571 KAYTL-----PAGNLLS-GR--------GHGEAIQ------------------------- 591
           K Y L     P G+  S GR          GE I                          
Sbjct: 598 KVYWLRVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVVKK 657

Query: 592 --------------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANT 635
                         + ++L+    ++ A + D + ++++ SS G A   +E ++  ++ T
Sbjct: 658 TPLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMSRT 717

Query: 636 RKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
            +G   +K+      + L++   G  +    E+      +ID+ P  SRG
Sbjct: 718 ARGVRGIKMPEGHHVVSLIIPQEGGVILTASEHGYGKRTAIDEFPAYSRG 767


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        S +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/617 (39%), Positives = 386/617 (62%), Gaps = 36/617 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NI  +N    ++++AV +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENIFENN----QDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G+   + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+ID
Sbjct: 57  NLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L +++N   ++E++++YI GPDFPTGGII   ++ I+E+
Sbjct: 177 IAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIF-GKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294

Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES +D +R+V+  K  ++  D+++ ++F  + ME+ F + M  ++  + P+V  L  +L
Sbjct: 295 DESDKDGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELL 352

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMV 418
           K +L HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +I+N  D P  +  +V
Sbjct: 353 KLFLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLV 412

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++F L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E
Sbjct: 413 AKFGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+K  F        +     E+         + +I  E + V I++RG+I+ + S   
Sbjct: 473 LLEIKNKF--------KVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 524

Query: 539 DLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
           +          A+   + D ++    ++T D ++ ++  G     K Y +P G   S   
Sbjct: 525 EKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTA 581

Query: 586 HGEAIQLLIDLNHNQDI 602
            G+A+  LI L  ++ I
Sbjct: 582 KGKAVVNLIQLQPDEKI 598


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/708 (36%), Positives = 394/708 (55%), Gaps = 62/708 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F  +++KSA
Sbjct: 16  IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 EKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  +  +Y  GRG   +RA+ 
Sbjct: 196 GEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+RDES  D   V+   
Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R EV+ RR+
Sbjct: 315 KREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418
            + ++    R  +L GL IA  NIDEIIA+IR    P+   V                  
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVASLIKL 433

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      + ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L+S
Sbjct: 434 IDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  ++E F        RRT F      +     + +I  E + V +S+ 
Sbjct: 494 RLRIMGIVKNELSTLREEFVTP-----RRTVF---GFGNAEMDNEDLIVPEDMVVTVSHS 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     ++T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   + +  G A+  ++ L   + I T           S   ++  +++G     + 
Sbjct: 606 LPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 663 SDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 377/602 (62%), Gaps = 25/602 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     ++KSARIVG+V+GK
Sbjct: 16  MKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKPYRKSARIVGDVLGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY ++V++AQ F  R  L+ GQGNFGN+DGDS AA RYTEARM+++A  +L+
Sbjct: 76  YHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRYTEARMSRLATELLR 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   ++E   EP+V P+K+PNLL NG++GIAVGMATSIP HN+ E+ +A + 
Sbjct: 136 DIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN + + E L+E+I GPDFPTG +I+ + E I E+YR GRG  RVRAR  +EE+ +G 
Sbjct: 196 YIDNRDCTTEDLMEHISGPDFPTGAMIIGT-EGIKEAYRTGRGKVRVRARAEIEELPKGK 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IV+TEIP+QV KSRL+E+IA+L+  K++  + D+RDE+    +R+V+  K R ++ ++
Sbjct: 255 QQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRVVIELK-RDVNANI 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  S +E  F + +N+  + + P+V+ L   L+ ++ H+++V+ RR+ F ++   
Sbjct: 314 ILNNLYKHSQLEETFSI-INLAIVDKTPKVLNLKQYLECYVDHQKDVITRRTQFELKKAQ 372

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NID +I+IIR  +     K  ++  F+L++ Q  AIL++RL+ L  
Sbjct: 373 ARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEEFALSDIQAQAILDMRLQRLTG 432

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I +E   L+     ++S+L    + +  I  E+  +K+ ++       RRT   E
Sbjct: 433 LERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADP-----RRT---E 484

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
           +  A+     + + E+E I + +++ G+I+ L + +          +SAL  +E D +  
Sbjct: 485 IKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALTTREEDFVTD 544

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST 611
            +   T   +L  +  G+ Y L A  +  G+    G AI  L+ LN  + I     +++ 
Sbjct: 545 LISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKIARTISFNTD 604

Query: 612 CK 613
            K
Sbjct: 605 SK 606


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/594 (39%), Positives = 366/594 (61%), Gaps = 25/594 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+
Sbjct: 78  YHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L 
Sbjct: 138 DINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLH 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++RAR  +EE G G 
Sbjct: 198 LSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  + +
Sbjct: 257 QRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDVR-KDANAN 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L E+L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKQALVEYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  +  K  M +   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++ +L   +     +  E+ ++KE F      G  R T  
Sbjct: 435 GLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             +   T D +L  +  G+ Y L    +  LS +  G  +   I+L++++ I T
Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELDNDETIST 601


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        S +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 359/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E VK VS+   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KK
Sbjct: 3   ERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEA
Sbjct: 63  SARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 123 RMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L L+ +P+++I +L+EY+ GPDFPTG  I+  R  I ++Y  GRG   +RA
Sbjct: 183 QLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQII-GRGGIRKAYETGRGSITLRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + D+RDES      ++ 
Sbjct: 242 KAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ +++  + ++T F +NM  L  G+ P+V+ L   L+ +L H++ V+ R
Sbjct: 302 EVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQ-PKVLNLKQCLQHYLDHQKIVIRR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL IA  ++DE+I +IR     D  K  ++++F L+E Q  AI
Sbjct: 361 RTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQAQAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E + L+     + ++L   ++    I  E+ E+KE F+    
Sbjct: 421 LDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFNDY-- 478

Query: 492 LGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
              RRT   E+      T+  + +I +E I V +++RG+I        RS +     +  
Sbjct: 479 ---RRT---EIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRGGRGIQG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           ++  E D ++  +   T D +L  +  GK Y
Sbjct: 533 MNTNEDDFVEHLVITSTHDIVLFFTNKGKVY 563


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L   R P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNSR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  D  K  M S   RF LTE Q  AIL++RLR L 
Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F        RRT   
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  + D +
Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T     
Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   +
Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664

Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +G     LI FS   +  + R   GV+  S ++G
Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/705 (37%), Positives = 410/705 (58%), Gaps = 48/705 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+   +A +KS+
Sbjct: 17  VDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 77  SIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + ++E +L  +++D VDF+  Y++   EP V PS  PNLL NG+SGIAVGM+T+IP HN+
Sbjct: 137 SPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGSSGIAVGMSTNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LIDNP+  +E L++++ GPDFPTGG IV  +++I  +Y  GRG  RVRA +
Sbjct: 197 GEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIV-GKDAIYSAYATGRGRLRVRADY 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
              EV      IVVTEIPYQ  K+R++E+IAE +    I  + D+RDES  + VRIV+  
Sbjct: 256 ---EVDPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADLRDESDRNGVRIVVEL 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  + D++ E+  + S +E+ F + +N+  +   P+V+ L   L+ ++AHR+EV+ RR
Sbjct: 313 K-RGANVDVV-ENQLLESHLESTFGV-INLALVDDEPRVLTLKETLEHYVAHRKEVVRRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           S F +     R  IL+G L A  N+D+++ +I++    D+ +  + S+F  +E Q   I+
Sbjct: 370 SQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRSQFDFSEEQAAHIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  +E  +I+SE +++ A  E++ ++L+S  +    I  E+RE+K  +      
Sbjct: 430 RMQLGSLTSMETAEIESEYEDVQARIERLQTILDSEDELLTVIKDELREIKAEYDDD--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
             R+T+  E   A+     + +I +E   VVI+   +I+ +   + D             
Sbjct: 487 --RKTSILE---AEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDAFDAQNRGGKGIIGSD 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K+GD +     A++ D +L  +  G+ Y L    +  +S    G++   +IDL  +++I
Sbjct: 542 PKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARGKSAVNIIDLGDDEEI 601

Query: 603 VTAFVYD----STCKLLVVSSKGNAFI----VEESEIIANTRKGKTFLKVSSEEKMKLV- 653
                 D      C  +V     N ++    V+E E I +T      +    E+   LV 
Sbjct: 602 TAVVSTDDFEEDECLTMVTR---NGYVKRTCVDEFENILST----GIIAAKLEDGDALVD 654

Query: 654 VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           V+VT D   + V  E    + F   ++ EM R  +GVR    +DG
Sbjct: 655 VEVTDDSGDLVVATEGGMTIRFDESEVREMGRSARGVRGIDLQDG 699


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERNKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  +EP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  E +RIV
Sbjct: 246 ARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K R  DP ++M  ++  ++ +  F +N N+  +  +P+ + L+ +L E++ HR+ ++
Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR  F ++    +  +L+GL IA  NIDEII II++    K     +V+ F L+E Q +
Sbjct: 364 ERRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVANFGLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++L+++L+ L  LE ++++ E + LL+  K+  + LLN  +     I   IRE  E  + 
Sbjct: 424 SVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENILLNPAR-----IINIIRE--ETINL 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
               G  R T          T    +++KE I V+++ +G+++ L  +           L
Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S+    +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L  
Sbjct: 537 SSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596

Query: 599 NQDIVT 604
            ++I+T
Sbjct: 597 REEILT 602


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/688 (37%), Positives = 403/688 (58%), Gaps = 29/688 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ L  G ++K
Sbjct: 8   ENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD AAA RYTE
Sbjct: 68  KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAVGMAT++P 
Sbjct: 128 VKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +  IDN +ISI +L E I GPDFPTG +I+  R+ I ++Y+ GRG   VR
Sbjct: 188 HNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIM-GRDGINKAYKTGRGKITVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S +  +RIV
Sbjct: 247 AVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIV 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K +  + ++++  ++  + ++  + +    L  GR PQ++ L  +++ ++ H+ EV+
Sbjct: 307 IDLK-KDANANVVLNKLYKETQLQITYGIINLALVNGR-PQILNLKELIRYYVDHQVEVI 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +   + R  I++GL IA  NID +I IIR+    K V+      FSLT+ Q  
Sbjct: 365 TRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+K+ +   
Sbjct: 425 AILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKY--- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
              G  R T  + S +D     + +I++E + + ++  G+I+ +        K     ++
Sbjct: 482 ---GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGIT 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           AL  KE D +K      T DR+L  +  GK Y L A  +  +GR   G A+  L++L+  
Sbjct: 537 ALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKG 596

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I +      +D    LL+V+ KG        E     + G   +K+  ++K+  V  V
Sbjct: 597 EKITSVINVEEFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLV 656

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            GD  + +V +  K + FS D++ +  R
Sbjct: 657 RGDEEIILVTKEGKSIRFSTDELRDQGR 684


>gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/616 (38%), Positives = 378/616 (61%), Gaps = 36/616 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 R+T    V++ ++  L+  +++ E + V +++ G+I+ +        K     +
Sbjct: 478 P-----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GH 586
             +  +E D ++      T DR+L  +  GK Y+L   ++  +GR             G 
Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQ 589

Query: 587 GEAIQLLIDLNHNQDI 602
           GE +  +I L  +QDI
Sbjct: 590 GEKVTAVIPLKKSQDI 605


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 273/731 (37%), Positives = 407/731 (55%), Gaps = 64/731 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    L  IDN +I+I++L+E+I GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   IVV+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + F ++    R  IL+GL +A  NIDEII +IR    P                   M+ 
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLE 424

Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           R                     + LTE Q  AIL+LRL+ L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 AELMIILASTERLMEVIREELIAVRDGFGDE-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIV 626
           K Y L    L L+ R   G+ I  ++ L   + I      D  C  K + +++       
Sbjct: 597 KTYRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTVKK 656

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                 AN R  G   + +  ++ +  V   TGD  + +  +  K++ FS D++  M R 
Sbjct: 657 TPLTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVRLQSYKD 694
             GVR     D
Sbjct: 717 AAGVRGMKLND 727


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +S    LV ++K    +V+ S  ++N     R GK  +    ++++  V   +G    
Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663

Query: 663 VVGENRKLLI 672
           ++G +   LI
Sbjct: 664 LIGTSHASLI 673


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/668 (37%), Positives = 397/668 (59%), Gaps = 33/668 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VRIV+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + +++ F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQSSFGVNMIALVNGR-PKLINLKEALIHYLEHQKVVVRRRTEYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII  IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F      G  R T  
Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           ++   D     + +I +E I + +S+  +I+ L   +          +  ++  E D + 
Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +   T D +L  +  G+ Y L    +  LS +  G  I   I+L +++ I T      
Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDETISTMIAVRN 607

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            +S    LV ++K    IV+ S +   +R    GK  +    ++++  V   TG+   ++
Sbjct: 608 LESEDDYLVFATKRG--IVKRSALSNFSRINKNGKIAISFKEDDELIAVRLTTGNEDILI 665

Query: 665 GENRKLLI 672
           G +   LI
Sbjct: 666 GTSHASLI 673


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 285/768 (37%), Positives = 414/768 (53%), Gaps = 90/768 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLSES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNP+I ++ L+EYI GPDFPT GII      IV  YR GRG  R+RA+  +E
Sbjct: 191 INACIALIDNPDIDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRIRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +     R 
Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407
           ++    R  +L+GL +A  NIDE+I +I                                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAMLGAAGA 428

Query: 408 ---RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              R ED PK V  +   + LTE Q   IL +RL  L  LE+ ++  E   LL   E I 
Sbjct: 429 EASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL---EVIA 485

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L++   +  +++   IRE  E+ +   + G  R T    S  D   L   +I  E + V
Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELVNVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+++        + +      SA   KE D ++     +T D +L  ++ GK + 
Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG+   GR          GE +Q ++ +    D    FV+ +T    V  + 
Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYAD--GQFVFFATKNGTVKKTP 658

Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
               AF +   +I  N  +G   + V   +  +         + +   N K + F  D++
Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGRTDGER--------DILLFASNGKTVRFGEDKV 710

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             M R   GVR      G   +V+   + E      SAG   + +E+D
Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGIEDENEDD 750


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/611 (40%), Positives = 365/611 (59%), Gaps = 51/611 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 16  VSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARAV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+A LALI+NP++  E L+EYI GPDFPTGGI++  R    ++Y  GRG   +R++  +E
Sbjct: 196 CDATLALIENPDLGSEDLIEYIPGPDFPTGGIML-GRSGARKAYIEGRGSVVIRSKTRIE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIAE +  KRI  +  ++DES    VR+V+  K R
Sbjct: 255 EIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDRHGVRVVVELK-R 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ GR P+ + L G L  ++  R EV+ RR++F
Sbjct: 314 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLHGFLSAFITFREEVVARRTAF 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------------- 420
            ++    R  +L GL +A  N+DE++A IR   +  + +  +++R               
Sbjct: 373 ELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAGDILEYIALID 432

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L +L   ++  EL  L A+ ++  ++L S +
Sbjct: 433 DPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVKE FS       RRT   + S        + +IE+E + V ++  G+
Sbjct: 493 RIMEIISTELREVKEQFSVP-----RRTQIVDWS---GDMDDEDLIEREDMVVTVTQGGY 544

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 604

Query: 581 LSGR-GHGEAI 590
           L GR   G+AI
Sbjct: 605 LGGRTSKGKAI 615


>gi|332971210|gb|EGK10173.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437]
          Length = 813

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 374/602 (62%), Gaps = 23/602 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G+     ++
Sbjct: 4   EQRINEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYTMHELGMTSDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG V+   HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSANVVGNVLASYHPHGDGAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM  +   +L+ ++++ +DF   Y+    EPVV P++FPNLL NG++GIAVGMAT+IP 
Sbjct: 124 ARMAPITRELLRDIEKETIDFTPNYDGRLEEPVVLPARFPNLLVNGSAGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA+I NPEI+I++L+E+I GPDFPT G+I+  R+ I ++YR GRG  +++
Sbjct: 184 HNLTEVIDGLLAMIQNPEITIDELMEHIKGPDFPTAGLIL-GRDGIKKAYRTGRGSIKMQ 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IVV E+PYQV K++L+EKIAEL+  K+I  + D+RDES  +   V+
Sbjct: 243 AKTRIEEANNGKMRIVVEELPYQVNKAKLVEKIAELVRDKKIDGITDLRDESDRNGMRVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +L+ +++  ++++T F +NM  L  G+ P V+ L  +L  +L H+ EV+ 
Sbjct: 303 IELRRDVNPKVLLNNLYKQTNLQTSFGVNMLALVDGK-PLVLNLKQVLHHYLEHQVEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I +IR      + +  ++ +F L++ Q  A
Sbjct: 362 RRTQFDLRKAEERAHILEGLRIALDHIDEVIELIRGSRTTQEARDGLMEKFGLSDKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E D LL    ++ ++L S ++    +  E+ EV++ +    
Sbjct: 422 ILDMRLQRLTGLEREKIETEYDELLKTIAELKAILASEEKIRGVVRDELTEVRDKY---- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             G  R +   ++  D A   + +I ++ +T+++++RG+I        R+ +     +S 
Sbjct: 478 --GDERRSRIMLNTGDIA--DEDLIPEDEVTILMTHRGYIKRMLLSGYRAQRRGGRGVSG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++     ++ + +L  S  GK Y + A  +  LS    G  I  LI ++  +
Sbjct: 534 MGTREDDFVQHLFVTNSHNYLLFFSNKGKVYRMKAYEVPELSRTARGTPIINLIQIDQGE 593

Query: 601 DI 602
            I
Sbjct: 594 YI 595


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  A +    + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++   
Sbjct: 248 EIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +  +++ +++  + M+T F +NM  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FSL+E Q  AIL+
Sbjct: 367 AYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT    V+   +    + +I +E I + ++++G+I+ L        K     +  +H 
Sbjct: 483 -RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D +L  +  GK Y
Sbjct: 540 NEDDFVEHLLITSTHDTVLFFTNKGKVY 567


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/755 (34%), Positives = 427/755 (56%), Gaps = 38/755 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++KSA +V
Sbjct: 10  VGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKSAHVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE R++ +
Sbjct: 70  GNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVRLSPI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 130 ASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIPPHNLGEL 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI+ PE  IE+LL +I GPDFPTGG I+ ++  I ESY  G+G   VR +  +E
Sbjct: 190 IDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTK-GIRESYLTGKGKLIVRGKIAIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   I++ EIPY V KS L+ +IAEL+  ++I  ++D+RDES    +R+V+  K +
Sbjct: 249 ETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVVIELK-K 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +DP +++  ++  + ++T F + M  +  G+ P+V  L  +L  +L HR+ V+ RR+ +
Sbjct: 308 DVDPQIVINQLYKHTQLQTTFGVIMLAILDGQ-PKVFNLKELLNIFLEHRKNVVTRRTKY 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GLLIA  ++DE+IAIIR   N +K +  ++ +F LT+ Q  AIL++R
Sbjct: 367 DLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLKFKLTQIQAQAILDMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L +LE+ ++  E++ +     +++ +L   K+ W  I+ E++E+K  ++       R
Sbjct: 427 LHQLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADE-----R 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
           +T   E  ++D     + ++   P  V I+   +I+ L   +          L+ L    
Sbjct: 482 KTLIEEEEKSDITI--EDILPDNPEVVCITQDSYIKRLPLSTYQLQRRGGKGLNTLANNN 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ---DI 602
            D +   +   T   + L S  GK Y L    L   S +  G  I+  +++++++   +I
Sbjct: 540 DDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETSRQSKGVPIKEYLNIDNDEKITEI 599

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF-LKVSSEEKMKLVVKVTG- 658
           ++   +        V+SKG   IV+++ I    N RK   + +K+  E+ +  V   +G 
Sbjct: 600 ISVNEFPKNLYFFFVTSKG---IVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTSGN 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWIDSAG 716
           D + +  +    + F    + EM R  +GV  ++  KD  +   + FK  + +  + + G
Sbjct: 657 DEIMIFTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDDSVIGGVIFKESKQIVLVTTYG 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                + N+    + KRGG+G    K  P++G  +
Sbjct: 717 IGKRVNPNEF--SVQKRGGMGVRAIKITPKTGDLV 749


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +S    LV ++K    +V+ S  ++N     R GK  +    ++++  V   +G    
Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663

Query: 663 VVGENRKLLI 672
           ++G +   LI
Sbjct: 664 LIGTSHASLI 673


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 409/716 (57%), Gaps = 55/716 (7%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKSARIVGEVIGKLH 87
           +YL YALS I  RAIPD+RDG KPV RRI+  M E + L F A  +KSA++VG+VIGK H
Sbjct: 56  KYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKSAKVVGDVIGKYH 115

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAAYRYTEA+++++A  ++  +
Sbjct: 116 PHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAKLSKLAAELITEI 175

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
             D V+FR TY+    EP+V P++FP LL NGT+GIAVGMATSIP HN+ E+  A L LI
Sbjct: 176 KRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHNLGEVIRACLLLI 235

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-----VG 262
           D P+ S+ K++  I GPDFPTGG +V  R+ +  +Y  G+G F++R  W  +E      G
Sbjct: 236 DEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGSWKYQEGKETKQG 295

Query: 263 RGSWC----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PK 316
           R        +V+TEIP+ VQKS L+E+I ++I++K++P++  ++D S ED+R+ L   PK
Sbjct: 296 RKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLSTEDIRVELELDPK 355

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRREV 371
           +  +DP+L+M  +F  + ++T   L++ VL+    P+V     + L  IL+ +L  R + 
Sbjct: 356 S-EVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSILRYFLDFRLQT 414

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDKPKPV--MVSRFSLTENQV 428
           + RR  + ++ ++ R+ IL+G  + + ++D+ I II R+E K      ++  F L++ Q 
Sbjct: 415 VRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKLIKAFELSDIQA 474

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           DA+L  RL  L KLE  +I+ EL +   + ++I ++L S K+ W  +  E++ +      
Sbjct: 475 DAVLETRLYKLAKLEILKIEEELADKRKQAKRIRAILKSKKKLWGVVRDELQAL------ 528

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           S +   RR T  +     +    ++ I +E   V+++  GWI+  +  +V+L     +EG
Sbjct: 529 SGEYADRRRTRIDAEDLTEEFSAESFIVEEDAMVLVTRDGWIK--RQRNVNLETTRMREG 586

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+    +   T D ++L S  G AY +   ++ +  GHG  +Q L      + +++    
Sbjct: 587 DAPLALVGGSTRDCVVLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFKDGEKVISVTTT 646

Query: 609 DSTCKLLVVSSK----GNAFIVEESEIIA------------------NTRKGKTFLKVSS 646
           D    L    ++    G  F       +A                  +TR G+ + K  +
Sbjct: 647 DPRFMLEFAEAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWPHREPSTRSGRLYGKTKA 706

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRL--QSYKDGGIS 698
            ++   V +V G D V  + +  KLL  ++  +  ++  G+GV L     KDG ++
Sbjct: 707 GDEFVEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAGPGRGVTLIKTDDKDGVVA 762


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/599 (40%), Positives = 353/599 (58%), Gaps = 23/599 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT   E   A K    + +I +E + V ++  G+++ L        K     +S ++ 
Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
           K+ D ++    A T   +L  ST GK Y L    L     H  G AI  L+ L   + I
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/697 (36%), Positives = 410/697 (58%), Gaps = 39/697 (5%)

Query: 12  LVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           L+EE   N+  +++   +   +L YA+S I  RA+PD RDG KPVHRRI++ M+E+GL +
Sbjct: 68  LIEEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFY 127

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A +KKSAR+VG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGDSAAA
Sbjct: 128 NAQYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAA 187

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  +++G+ +D VDF   Y+  + EP V PS+ PNLL +G +GIAVGMA
Sbjct: 188 MRYTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMA 247

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E  +A +AL  N EI+IE+L+++I GPDFPTG  I+ +   I+ +Y  GRG
Sbjct: 248 TTIPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGT-SGIITAYETGRG 306

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
              +R++  +E +  G   I++TEIPY+V+K  +IEKIA L   KRI  + +IRDE++ +
Sbjct: 307 AIVLRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRK 366

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  K +++ P++++  +  L++++  +  NM  L  G  P+++ L   L  +L H
Sbjct: 367 GIRVVIDLK-KNVIPEVILNKVLKLTNLQVNYNFNMIALVKGE-PKLLNLKQALDVYLKH 424

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ F ++    R  IL+GL+IA  NIDE+I +IR   N++  +  +++ F L+
Sbjct: 425 QIDVVTRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMASFKLS 484

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AI+++RL  L  L   + + EL+ L  E    +++LNS ++  + I  E+ E+K 
Sbjct: 485 EIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYENILNSHEKLIDLIVSELEEIKA 544

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKS 535
            F      G  R T    S  D   ++ + +I  + I + +S  G++        RS K 
Sbjct: 545 RF------GDERRTIINTS--DYGIIKDEDLIPNKNIAITLSKNGYVKRTPLTDFRSQKR 596

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
             V +        D +   L  HT   IL+ ++  K Y + A  +  LS +  G      
Sbjct: 597 GGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINF 656

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSE 647
           I+++  + +V+      Y     LL ++  G   I +++ I A  R    GK  L +  +
Sbjct: 657 INIDKKEKVVSLLSVEEYFEGTYLLTITKNG---IAKKTSIEAYKRIQSNGKFALSLKED 713

Query: 648 EKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR 683
           +++  V+ +  +   ++G N  K++ F   +I  M R
Sbjct: 714 DELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPMGR 750


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|256830857|ref|YP_003159585.1| DNA gyrase subunit A [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/611 (39%), Positives = 367/611 (60%), Gaps = 30/611 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+G  +  A+KKSAR+V
Sbjct: 4   ISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARVV 63

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGDSAAA RYTE RM+++
Sbjct: 64  GDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSKL 123

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  +++D V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 124 AGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGEV 183

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+D+P++SI++L++YI  PDFPTG +I   +  I E+YR GRG  R+R+R  +E
Sbjct: 184 VDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIY-GKAGIREAYRTGRGSVRIRSRIEIE 242

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +       IVV EIPY + KS L+EKIA L+  ++I  + D+RDES  + +RIV+  K +
Sbjct: 243 KRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLK-K 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  D+++  +F  + +ET F +NM  +   R PQ++ +  +L+ +L +RREV+ RRS F
Sbjct: 302 GVFSDVIVNQLFKFTSLETSFGINMMAVVNNR-PQLLNVKQVLEYFLDYRREVVIRRSRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GL IA   IDE++A+IR    P   K  +  RF L+E Q  AIL++R
Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFGLSEIQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E + S++ + +   + I  E++++++ F+        
Sbjct: 421 LQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATPRK---- 476

Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
                E+   D  ++  + +I  EP+ + +S  G++        R  +     ++ +   
Sbjct: 477 ----SEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLDNYRQQRRGGTGITGVQVA 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           E D +   L       + L S  GK Y +    +  G     G+ +  L+ L+ N+ I  
Sbjct: 533 EEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAA 592

Query: 605 AFVYDSTCKLL 615
           A     TC+ L
Sbjct: 593 AM----TCRDL 599


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEVVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 401/711 (56%), Gaps = 66/711 (9%)

Query: 6   ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++ N L E +V    + +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  D EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALID+P I+++K++E I GPDFPTGGII+     I  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIIL-GHSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    + +  ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGK-PEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------- 410
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR             
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLM 418

Query: 411 ----------------DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                           D P+ ++   + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + +  E+  ++E F+       RRT F   S        +
Sbjct: 479 KIGVDIADYLHILASRSRIMSIVKDELNVLREAFATP-----RRTIFGFGSAEMDC---E 530

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I        R+ +      S +  K+ D +      +T   +L
Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVL 590

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCK 613
             ST G     K + LP G   + +  G A+  ++ L   + I T           S   
Sbjct: 591 FFSTRGIVYKEKVWRLPIG---TPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALD 647

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           ++  +++G     + S+ +   R GK  +K+  E+++ L V+   +H  VV
Sbjct: 648 VMFATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 697


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        S +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/597 (40%), Positives = 357/597 (59%), Gaps = 29/597 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     FK
Sbjct: 6   QENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKPFK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ + AE +L  +++D VDF+  +++   EP V P+K P LL NG+SGIAVGMAT++P 
Sbjct: 126 ARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNMPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  +A I+N +I+IE+L++YI GPDFPT GII  S + I E+YR GRG   +R
Sbjct: 186 HNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGS-QGIREAYRTGRGKVLMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+VTEIPY V K+ LIE+ A+L+  K+I  + DIRDES +D   ++
Sbjct: 245 AKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   R     +++ +++  + ++  F +N   L  G+ PQ + L  +++ ++AHR EVL 
Sbjct: 305 YDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGK-PQTLNLKELIQHFVAHRHEVLL 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
           R++ + +    +R+ IL+G LIA  N+D II++I   R+ +  K  ++  + L+E Q  A
Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQTYQLSEQQAKA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRL+ L  +E  +I  E        E++  +L+    Q   I  E+ E+KE +    
Sbjct: 424 ILELRLQRLTGMERDKILQEHRETTQLIERLQLILSDRDLQMTLIKNELAELKEQY---- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             G  R T  E    D  TL+  MI +E + + IS +G+I        R      V   +
Sbjct: 480 --GDARRTVIE-HNTDDITLED-MIAEEDMVITISQQGYIKRTPLSEYRIQNRGGVGARS 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
              KE D +     A T   +L+ +T G     K YTLP G   S    G AIQ LI
Sbjct: 536 TATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEG---SKSSKGRAIQNLI 589


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|332673551|gb|AEE70368.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           83]
          Length = 828

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 278/771 (36%), Positives = 440/771 (57%), Gaps = 60/771 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+I+NP+++ E+L+E I GPDFPTGG I   RE I+++Y  GRG  ++RA+
Sbjct: 186 LSEVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+ 
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +L+  ++  + M++ F + M  +   R P+V+ L   +  ++ HR+E++ R
Sbjct: 305 ELKKDENPTILLNHLYKQTQMQSSFGIIMLAIVHNR-PRVLTLRETIDFFIEHRKEIVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  N+DE+IA+I+    P   K  ++ RF L++ Q  AI
Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMERFGLSDLQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F     
Sbjct: 424 LDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELIELKDKF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G +R +   +  AD  +L+  ++E E + V IS+ G+I        R+ +      + +
Sbjct: 479 -GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
             KE D ++    A T D ++  +  GK Y L    +  +GR   G+AI  L++L  N+ 
Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595

Query: 602 I-----VTAFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVV 654
           I     V  FV D   K ++++++    +V+++ ++  ++ R G   + V+ +E  KL+ 
Sbjct: 596 ITAILPVKEFVDD---KFIMMATRNG--VVKKTNMMEYSHPRVG-GIIAVNLDEGDKLIS 649

Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDV 700
               D    V +   N K + F  D +  + R  +GVR  + +D  +          +D 
Sbjct: 650 VALTDGKQDVLLATANGKAIRFKEDDVRTVGRVSRGVRGMALEDDVVIGMAILNEHFTDS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             F + E     +  G+    SE         RGG G +  K   R+G+ +
Sbjct: 710 TIFTVTE-----NGYGKRTEISEY----RTQSRGGKGVITIKTTERNGQVV 751


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/704 (36%), Positives = 401/704 (56%), Gaps = 48/704 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+       F K
Sbjct: 13  EDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELNNYHNRPFLK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD  AA RYTEA
Sbjct: 73  SARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++GIAVGMAT+IP H
Sbjct: 133 RMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  + +I++P I++  L+E I GPDFPTGG I   R  I E+Y  GRG   +R+
Sbjct: 193 NLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFIC-GRAGIREAYETGRGSLLIRS 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + RDES    +RIV+
Sbjct: 252 RHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDESDRHGMRIVI 311

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGRVPQVMPLDGILKEWLAHRREVL 372
             K   +  ++++  ++ ++ ++  F + M ++++M   P+V+ L  IL+ ++ HR+ V+
Sbjct: 312 ELKKDEI-AEVVINQLYKMTPLQKSFGIIMLSIVNMR--PEVLNLRQILENFILHRKTVV 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
           +RR+++ ++  + +  +L+GL IA  N+DE++A+I+    P+     +++RF L+  Q  
Sbjct: 369 YRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQAQ 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E   ++E +   
Sbjct: 429 AILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDD 488

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT   E+  A    L + MI +E + V +++ G+I   K + VD      + G 
Sbjct: 489 -----RRT---EIIDAPDEILPEDMIAREEMVVTVTHAGYI---KRNPVDTYRSQRRGGK 537

Query: 550 SLKIALH-----------AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593
            +K A             A T D +L  S  G     K Y +P    L+    G+A+  L
Sbjct: 538 GIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLA---RGKAVVNL 594

Query: 594 IDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++L   + +      DS          +L+ + KG       SE     ++GK  L +  
Sbjct: 595 LELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIRE 654

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688
           ++++      TGD+  ++   R + + F  D I  M RG  GVR
Sbjct: 655 DDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAMGRGASGVR 698


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 382/625 (61%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + ++ NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   E+  A +    + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/600 (39%), Positives = 358/600 (59%), Gaps = 47/600 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  VS+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  IDNPE+++++LLE + GPDFPTGG+I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+  R P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ FR++    +  I  GL IA L+I E+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEIN 418

Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               ++S          + LTE Q  AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+       R+T+  E   +D     + +I +E + V 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVVT 530

Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K SH                KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRL 590


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 365/572 (63%), Gaps = 26/572 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+    A+KKSA
Sbjct: 9   VKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +++ +++D +D+++ Y+  ++EP+V P++FPNLL NGTSGIAVGMAT+IP HN+
Sbjct: 129 SKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LAL +NP I+  +L+EYI GPDFPTG  IV     I  +Y  G+G   +RA+ 
Sbjct: 189 GEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIV-GVSGIRRAYETGKGSITIRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTEIPYQV K+RLIEKIAEL+  K++  + D+RDES      ++   
Sbjct: 248 EIED-NNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++ ++L+ +++  + +++ F +NM  L  GR P+V+ +  +L  +L H+R V+ RR+
Sbjct: 307 RRDVNANVLLNNLYKQTALQSSFGINMLALVDGR-PKVLSIKEVLYHYLEHQRVVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDEIIA+IR        +  ++  FSL+ +Q  AIL+
Sbjct: 366 EFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMENFSLSHDQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+ + +++ ++L   ++    I  E+ ++++ ++      
Sbjct: 426 MRLQRLTGLERDKIEAEYQELVEKIKELKAILADDEKVLAIIREELTDIRDRYNDE---- 481

Query: 494 RRRT--TFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            RRT  TF E S  D     + +I ++ + + +S+ G+I        RS K     +  +
Sbjct: 482 -RRTIITFGEDSMED-----EDLIPRQNVVITLSHNGYIKRIPLSTYRSQKRGGRGVQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + D ++     ++ D +L  +  GK Y L
Sbjct: 536 GTHDDDFVQHLFITNSHDHLLFFTNKGKVYRL 567


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/763 (34%), Positives = 436/763 (57%), Gaps = 44/763 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++++ ++   ++  +L+YA+S I  RA+PD+RDG KPVHRRI++ M E+G      +KKS
Sbjct: 8   HIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+R
Sbjct: 68  ARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D+   Y+  ++EP+V P+++PNLL NG SGIAVGMAT+IP H+
Sbjct: 128 MSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHH 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +  LA+ DNP I+ E+L+E I GPDFPTGGII+  R  I  +Y  GRG   +RA+
Sbjct: 188 LGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIIL-GRSGIRRAYESGRGSLTIRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES  +   ++  
Sbjct: 247 VEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ V+ RR
Sbjct: 307 VRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQ-PKVLSLKEVLYHYLEHQKVVIKRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  +IDEII+II   R+ ++ +P ++ RF+L+E Q  AIL
Sbjct: 366 TAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +I++E   LL   +++ ++L    +    I  E+ ++KE +S     
Sbjct: 426 DMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
             RRT   E++      ++ + +I +E   + +++ G+I+ L +++          +  +
Sbjct: 483 --RRT---EITAGGLEMIEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              E D ++  L   T D IL  ++ G     K Y +P       +  G  I  L++++ 
Sbjct: 538 GTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPE---FGRQAKGLPIVNLLNIDK 594

Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + +     VT F  D+     + ++K         +  AN R          E+   + 
Sbjct: 595 GEHVTAMIRVTEFKEDA---YFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLIS 651

Query: 654 VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V +T G    ++G +  +L+ F  D I  M R   GVR    ++G    V+  +I E G 
Sbjct: 652 VHLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAGVRGIKLREGDF--VVGMEILEPGQ 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +   +    L  RGG+G    +   ++GK  +
Sbjct: 710 EILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCA 752


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I+N EI+I++L+ YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 NIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++ L+ ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +IRN   P   K  ++SR            
Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++++        RRT   E+  A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S  G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           KAY+L
Sbjct: 597 KAYSL 601


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/672 (36%), Positives = 396/672 (58%), Gaps = 30/672 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           TL  E+++ V ++  +E  Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G+ +  
Sbjct: 5   TLFPEDIQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAYNK 64

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG++DGDSAAA R
Sbjct: 65  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMR 124

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++++ +L  ++++ V+F+  Y++   EP + P++ PNLL NG+SGIAVGMAT+
Sbjct: 125 YTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMATN 184

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+D PE  I ++++ I GPDFPT G I   ++ I+++YR GRG  
Sbjct: 185 IPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFIT-GKQGIIDAYRTGRGRI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
           R+RAR  +E    G   I+VTEIPYQV KSRL+EKI EL+  KRI  + D+RDES  E +
Sbjct: 244 RMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDREGM 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R    + ++  ++  + ME  F + +N+  +   P+V+ L  IL+ ++ HRR
Sbjct: 304 RIVVEIK-RGEHAESILNRLYKFTPMEGTFGV-INLALVNNSPRVLNLKEILEYFIEHRR 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           E++  R  F +    ++  IL+GL +A  N+DE+I  IR      + K  +++RF  ++ 
Sbjct: 362 EIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIARFQFSDE 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I  + + +LA  + +  +L +  +  + I  E+ E++E +
Sbjct: 422 QAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDSRVIDIIRTELHEIREKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           +       RRT   +    D   +  + +I  EP  + ++N G+++   + +        
Sbjct: 482 ADP-----RRTIIID----DHEEIDLEDLIADEPTVITLTNDGYVKRTPADTYKSQHRGG 532

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLID 595
                L  KEGD +       T + +++ +  G+ Y + A N+   GR   G+AI   +D
Sbjct: 533 KGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRGKAIVNFVD 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I T F    +     LL ++  G A     SE     +KG   + +  ++++  
Sbjct: 593 LEKDEKISTVFPVREFSEDKFLLFITKNGIAKKTPLSEYANIRKKGVNAINLDDDDELIQ 652

Query: 653 VVKVTGDHVAVV 664
           V+   G +  +V
Sbjct: 653 VMHTNGSNSVMV 664


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/602 (40%), Positives = 391/602 (64%), Gaps = 26/602 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL   AA+KK
Sbjct: 9   QDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 69  SARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT +AE +L+ +D+D VDF   Y++  SEP V PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 129 RMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A + LI+NP+  + +++E+I GPDFPTGGII   ++ I+ +Y+ GRG  +VRA
Sbjct: 189 RLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIF-GKQGILNAYKTGRGRIKVRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +E+V +    IV+ EIPYQV K+RLIE+IA+++  K++  + +IRDES  E +R+V+
Sbjct: 248 KTHIEKV-KNREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRVVI 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + +  D+++ +++  + ME  F + +  + + + P+V  L  +L  +L HRR ++ 
Sbjct: 307 ELK-KDVMSDIILNNLYKSTQMEVTFGIILLAI-VNKEPKVFTLLELLHLFLNHRRTIVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLL A  NIDE+IA I+ +ED P  +  ++ +F LTE Q +A
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEKFELTEIQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++++E   L+ E E++ ++L S ++    I  E+ E+KE F+ + 
Sbjct: 425 ILDMKLQRLTGLEREKLENEYKELMEEIERLSAILKSEEKLNEIIKTELLEIKEKFT-TP 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
            L     ++ E+   D       +I  EP+ V I++RG+I+ +        K      +A
Sbjct: 484 RLTEIVESYEEIDIED-------LIPNEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKTA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +   E D ++    ++T D ++ ++  G+ Y L    +  +GR   G+A+  L+ L  ++
Sbjct: 537 VTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAGRTAKGKAVVNLLQLQPDE 596

Query: 601 DI 602
            I
Sbjct: 597 KI 598


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 278/760 (36%), Positives = 434/760 (57%), Gaps = 46/760 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+      +K ARIV
Sbjct: 11  VDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKPHRKCARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD SVYD+LVRLAQ F  RY L+ G GNFG++DGD AAA RYTEARM ++
Sbjct: 71  GDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRYTEARMDKM 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ ++++ VDF   Y+ ++ EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 ANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +    LI+NPE ++  L+  I GPDFPT GII+  +  I E+Y  GRG   VRA   +E
Sbjct: 191 IDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIM-GKSGIREAYETGRGKVVVRANATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E G G   I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D +RIV+  K R
Sbjct: 250 EDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVIELK-R 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P++++  ++  + ++  F + M  L +   P+V+ L  +L  +L  ++EV+ RR+ F
Sbjct: 308 DANPNVILNQLYKHTKLQDSFGIIMLAL-VDNQPKVLNLKEVLVHYLNFQKEVITRRTQF 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE+I+IIR+    ++ K  +  RF+L+E Q  AI+ +R
Sbjct: 367 ELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFALSEKQSTAIVEMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSL  LE  +I+ EL  L+A   K+  +L +     N I  E+ E+K  F      G  
Sbjct: 427 LRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEIKGRF------GDE 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
           R T  E S+ D     + +I++  + V ++  G+I+ +   +          + A   KE
Sbjct: 481 RRTAIEASQNDINI--EDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKE 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLP------AGNLLSGRGHGEAIQLLIDLNHN-- 599
            D ++      T D IL  S  G+ YTL       AG    G      I LL+       
Sbjct: 539 DDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTN---VINLLLLRPEEKI 595

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRK-GKTFLKVSSEEKMKLVVKV 656
           Q ++T   ++ +  L+  + KG   I++++  E  +N RK G   + +  ++++  V   
Sbjct: 596 QAVITLSEFEKSQYLVFGTKKG---IIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLS 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWID 713
           +G D + +V +N   + F  + +  M R   GV+  S +D    +V+  +I  E +  + 
Sbjct: 653 SGEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDE--DNVVSMEIVDESMDILV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   Y +           RGG+G +  K   ++GK +++
Sbjct: 711 VSENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAA 750


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/687 (36%), Positives = 397/687 (57%), Gaps = 30/687 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V++   +   YL YA+S I  RA+PD RDG KPV RRI++AM   GL     + K A
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD SVYD+LVRLAQP+  RYPL+ GQGNFG++DGD+AAAYRYTEAR+
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L+ +D D V+F   ++    EP+V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+    L+DNP+ ++E L+++I GPDFPTGG I+ + E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGT-EGIISAYSSGRGRILIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +EE  RG++ IVVTE+PYQV K+RLIE+IAEL+  KRI  + D+RDES    +R+V+  
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIIL 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374
           K  +  P  ++  +F  + M+T F  NM  L   G+ P+ + L   L+E++ HR+ V+ R
Sbjct: 305 KQDA-QPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+   +     R  IL+GL IA   +DE+IA I   R  +  +  ++  F L+E Q  AI
Sbjct: 364 RTEHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKNFKLSELQSQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I+ E   +L     ++ +L+  ++ +  I  ++ E+KE +     
Sbjct: 424 LEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSKPERVFKIIKDDVAELKEKYGDV-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RR+     +  D +T  + +I    + V +++RG+I+ L   +          +  +
Sbjct: 482 ---RRSRIIADATGDIST--EDLIPDMNVLVTVTDRGYIKKLPGDTYRVQNRGGRGIKGM 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQD 601
             KE D +   L  +T + +L  +  GK Y L    +       + + L  LI L   + 
Sbjct: 537 TTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRTAKGLPLVNLISLEPGE- 595

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +VT+ +    +D    L++ + KG     + SE  +    G   + + + ++++ V    
Sbjct: 596 LVTSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSN 655

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR 683
           GD  + +  ++ + + FS  ++  M R
Sbjct: 656 GDEDILMTTQHGQTIRFSQAEVRPMGR 682


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/605 (40%), Positives = 362/605 (59%), Gaps = 51/605 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR VG+V+GK
Sbjct: 7   MKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 66

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + A  +L 
Sbjct: 67  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKPASALLA 126

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 127 DIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLA 186

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++S E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +RA+  VEE+ R  
Sbjct: 187 LIDNPDLSSEELIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRAKTRVEEIRRDR 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
           W IV+ EIPYQV K+ +IEKIAE    KRI  +  ++DES  + VR+V+  K R    ++
Sbjct: 246 WAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELK-RDATAEV 304

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +F  + M+T F  NM  L+ GR P+ + L G L  ++A R EV+ RR+++ ++   
Sbjct: 305 VLNQLFRFTPMQTSFGCNMLALNGGR-PEQLTLRGFLTAFIAFREEVVARRTAYDLRKAR 363

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------------- 420
            R  IL GL +A  N+DE++A IR+     +  + +M  R                    
Sbjct: 364 ERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPTHRA 423

Query: 421 -----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                ++L+E Q  AIL LRL+ L +L   ++  EL  L A+ ++  ++L S ++    I
Sbjct: 424 NDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIMEII 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI----- 530
           A E+REV++ F+       RRT   E++        + +IE+E + V +++ G+I     
Sbjct: 484 ADELREVRDQFAVP-----RRT---EITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTAL 535

Query: 531 ---RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
              R+ K     LS +  KE D +     A+T  ++L  +TDG AY L    L  G    
Sbjct: 536 ADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTA 595

Query: 586 HGEAI 590
            G+AI
Sbjct: 596 KGKAI 600


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/650 (38%), Positives = 385/650 (59%), Gaps = 40/650 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +++D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGGII    + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G   IVVTEIPYQV K+ +I+K A+LI  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEV-QGRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + ++T F +N   L  GR PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGR-PQLLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKRFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L + +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDILANEERRMQIIKDELLEVKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I        ++     V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPDEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      Y +P G+  S    G AIQ LI++  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + D V AF+     K        +   V    +I  T+KG T  K S E+
Sbjct: 591 D-DKVMAFICTQDLK--------DEEYVNSHYVIMATKKG-TVKKTSLEQ 630


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/462 (45%), Positives = 318/462 (68%), Gaps = 8/462 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG  
Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  E+   GS   V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +  
Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL  R
Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  FS++E Q 
Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFSISETQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++
Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERK 460


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/564 (40%), Positives = 351/564 (62%), Gaps = 22/564 (3%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK ARIVGE++GK+HPH
Sbjct: 19  YLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVGEILGKMHPH 78

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVRLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR+T +AE +L  +++
Sbjct: 79  GDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARLTPIAEEMLADIEK 138

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDFRD ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN+ E+C+A   LIDN
Sbjct: 139 NTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLNEVCDAITHLIDN 198

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+ +IE L   + GPDFPT G+I+ + E I+ +Y  GRG   +RA+  +EE  RG++ IV
Sbjct: 199 PDATIEDLARIMPGPDFPTAGMILGT-EGIMNAYSTGRGHITIRAKAHIEEAARGAFHIV 257

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           VTE+PYQV K+RL E+IAEL   ++I  + D+RDES    +R+V+  K  +  P  ++ +
Sbjct: 258 VTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDA-QPKKVLNA 316

Query: 329 IFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           ++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR+ F +     R 
Sbjct: 317 LYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRTEFDLDKARARA 376

Query: 388 EILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL IA  N+D +IA IRN    D  +  +++ F+L+E Q +AIL ++L  L  LE 
Sbjct: 377 HILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMNGFALSEAQANAILEMQLGRLAALER 436

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   ++    +++ +L + ++  + I  ++ ++K  +        RRT    +  
Sbjct: 437 QRIEEEYREVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDP-----RRTRI--IPD 489

Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556
           AD     + +I    + + +++RG++        R+ +     +     +E D ++  L 
Sbjct: 490 ADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILA 549

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL 580
           A T D +L  +  GK Y + A  L
Sbjct: 550 ASTMDDLLFFTDRGKVYQIKAHEL 573


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 357/568 (62%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++   
Sbjct: 248 EIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +  +++ +++  + M+T F +NM  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  IL+GL IA   +DE+I +IR+       +  ++ +FSL+E Q  AIL+
Sbjct: 367 AYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFSLSERQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT    V+   +    + +I +E I + ++++G+I+ L        K     +  +H 
Sbjct: 483 -RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D +L  +  GK Y
Sbjct: 540 NEDDFVEHLLITSTHDTVLFFTNKGKVY 567


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/648 (39%), Positives = 390/648 (60%), Gaps = 43/648 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  V++  +L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM EMG+     +K
Sbjct: 3   EKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDSAAA RYTE
Sbjct: 63  KSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RMT++AE +L  +D+D VDF   Y+    EPVV P++ PN+L NGTSGIAVGMAT+IP 
Sbjct: 123 VRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + +IDNP  + E++L +I GPDFPT GII   ++ I+++Y+ G+G  +VR
Sbjct: 183 HNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIY-GKDEILKAYKTGKGVIKVR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+   E    G   +VVTE+PYQV K+ LIEKIA L   K+I  + D+RDES  D +RIV
Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + D+++  ++  + ME  + +N+ V  +   P+ + L  +L+++L HR+ V+
Sbjct: 302 IELK-RGENADIIINQLYKFTQMEIAYGINL-VGIVNNKPKTLTLRDLLEQFLEHRKVVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++  + R+ IL+GL+ A  NIDE++A+I   +N  + K  +++RF L++ Q  
Sbjct: 360 IRRTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQAQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  ++++E    L   E   S+LN+       I  E+ ++K  +   
Sbjct: 420 AILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSV----DL 540
                RRT    V+ +++  ++  +I  + + V +S +G+I+     + KS         
Sbjct: 480 -----RRTQI--VNSSEEINIED-LIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKT 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595
            A + KE D +K  L       ++  +  G     K Y LP    L+    G+ I  LI 
Sbjct: 532 GAGNVKE-DFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPE---LARDAKGKYIANLIS 587

Query: 596 LNHNQDIVTA----------FVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           L+ ++ +             +++  T + +V  +  +AF    S IIA
Sbjct: 588 LDKDEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIA 635


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/641 (37%), Positives = 381/641 (59%), Gaps = 39/641 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN EI I++L++YI  PDFPTGGII    + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIY-GYDGVKDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+V+EIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KSVIEEV-KGRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  GR P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGR-PEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL+IA  NIDE+IA IR   N D+ +  +++RF LTE Q  AI
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIARFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDILANEPRRYEIIKGELAHIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548
            G  R +  E +  D +   + MI    + V ISN G+++  +L+ + V       ++G 
Sbjct: 477 -GDDRRSVIEYAGGDMSI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                D L+          ++  +  GK      Y +P G        G A+Q LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEQ 590

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           + D V AF       L+    K  A+I     I+A T+KG+
Sbjct: 591 D-DKVKAF-------LVTQDLKDEAYINSHYVIMA-TKKGQ 622


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/603 (39%), Positives = 373/603 (61%), Gaps = 24/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ YA+S I  RAIPD RDG KPVHRR ++AM EMG      +KK
Sbjct: 6   EGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++YD+LV++AQPF  R  L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 66  SARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+++E +L  +D+  VDF   ++E   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 126 RLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+CEA   +ID+   S E+L++ + GPDFPTGGI++ +   I ++Y  GRG   VR 
Sbjct: 186 NLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGT-AGIRDAYLTGRGKCVVRG 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EE GR +  I++TEIP+QV K+RLIE IA L+  KRI  + DIRDES  D   ++ 
Sbjct: 245 VAEIEEEGR-TPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++  + +E+ F + +N+  + R P+ + L  I+ E+L HR +V+ R
Sbjct: 304 ELKRGAAPQVILNFLYKHTALESSFGI-INLAIVDRQPRTLNLKEIIHEFLKHRVDVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R+ IL+GLL+A  NID +IA IR     D+ +  +V++F+L E Q DAI
Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAKFALDEVQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I  E D + AE E++ ++L S       I  EI+  KE+      
Sbjct: 423 LKMQLRRLAALEHQKILDERDAIAAEIERLSAILAS----EASILAEIK--KELVDIGAR 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R T   +++A +A  ++ +IE +P+ V +++  ++        R+ +     +  +
Sbjct: 477 FGDERRT--RIAQAAEAFDREDLIEDKPVLVSLTSSNYVKRIDLDTYRNQRRGGHGVIGM 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             K+ D ++    A+  D +L  +  G+ Y L   +L  G+  G G+A+  L++L+  + 
Sbjct: 535 ATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQRTGKGKALVNLLNLDGEER 594

Query: 602 IVT 604
           + T
Sbjct: 595 VTT 597


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 266/726 (36%), Positives = 417/726 (57%), Gaps = 40/726 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S ++ L   N++  +L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+EMG
Sbjct: 1   MSATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +       KS+RIVGEV+GK HPHGD S+YD+LVR+AQ F  R+ L+ GQGNFG++D D 
Sbjct: 61  VQPNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+ ++A  +L+ +D D VDF   Y+ ++ EP+V P++FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E   A +A I+NPEI ++ L+++I GPDFPT G I+     I ++Y  
Sbjct: 181 GMATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPT-GGIILGVGGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIR 302
           GRG  RV+AR  +E + +G   IVVTE+PYQV+K     LI+KIA+L+  K+IP + D+R
Sbjct: 240 GRGRVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES       +    R + P +++  ++  + M+T F +NM  L +  VP+ + L  ++ 
Sbjct: 300 DESDRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVAL-VDNVPKTLSLREVIG 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            ++ H+REV+ RR+ + ++  + R  IL+GLLIA  NIDE+IAIIR   + ++ +  +V+
Sbjct: 359 RYVDHQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q +AIL + L  L  LE  +++ E  +L+    ++  +L    +Q   I  E+
Sbjct: 419 RFELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERIRELREILGDEDRQMAIIKEEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533
           +E+ + +        RRT    +S A+     + +I  + + + I+  G+I+SL      
Sbjct: 479 QEISDAYGNE-----RRTA---ISYAEGEIDIEDLIADQQMVITITKTGYIKSLPLATYR 530

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
             +   V ++ +  K+GD ++      T D +L  +  GK Y      L   S    G A
Sbjct: 531 QQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVYELPEASRTAKGRA 590

Query: 590 IQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NT---RKGKTFL 642
           +  ++ L      Q +++   +     LL  + KG    V+++E+ A NT     G   +
Sbjct: 591 LVNILPLREGERVQSVLSTRDFSEAPYLLFATRKGT---VKKTELQAYNTPIKADGIIAI 647

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700
           K+  ++++  V +V  GD V +V      + FS      M R   GVR     D G  +V
Sbjct: 648 KIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDVGDSG--EV 705

Query: 701 ICFKIC 706
           I   I 
Sbjct: 706 IAMDIA 711


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/626 (39%), Positives = 384/626 (61%), Gaps = 43/626 (6%)

Query: 4   DNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           DN    N++ E +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 3   DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+ID
Sbjct: 63  ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +G
Sbjct: 123 GDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP H + EI +A   +++NP  +++++LE++ GPDFPTGGII   +  IVE+
Sbjct: 183 IAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIVEA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++R
Sbjct: 242 YKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 300

Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L
Sbjct: 301 DESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
           + +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++
Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALM 418

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E
Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTE 478

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + EVKE FS       R T   E+  + +    + +I  EP+ V +S +G+++      V
Sbjct: 479 LLEVKEQFSSP-----RHT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RV 525

Query: 539 DLSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580
           DL A   +             E D ++    A+T D +L ++  G     K Y +P  + 
Sbjct: 526 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           ++    G+AI  LI L  ++ I+   
Sbjct: 586 IA---MGKAIVNLISLAPDEKIMATL 608


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 274/768 (35%), Positives = 410/768 (53%), Gaps = 114/768 (14%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKSAR+V
Sbjct: 11  VSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LA++DNP+I+I++L+EYI GPDFPTG II   R  IVE+YR GRG   +RA+  +E
Sbjct: 191 VRGCLAMVDNPDITIDELMEYIPGPDFPTGAII-NGRAGIVEAYRTGRGRVVMRAKAEIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +   G   I+VTEIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D +RIV+  K 
Sbjct: 250 TDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVIEVK- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           ++   D+L+ ++F  + ++T F +NM  L  G+ P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 309 KTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQ-PKLLNLKDMLEAFIRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413
           + ++    R  IL+GL +A  NIDE+I +I+    P                        
Sbjct: 368 YLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLERA 427

Query: 414 -----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                +P        V+  R+ L+  Q  AIL+LRL  L  +E  ++ +E D+ + E  +
Sbjct: 428 GDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKEIAE 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L +  +    I  E+ +V        D G  R T    S  D  T  + +I  E  
Sbjct: 488 YLEILGNAIRLMEVIRAELEQV------IADFGDARRTEIIASSLDLTT--EDLIAVEDR 539

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S         +   +  SA   K+ D ++  L A T D IL  ++ GK 
Sbjct: 540 VVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKV 599

Query: 573 YTLP------AGNLLSGRG--------HGEAIQLL------------------------- 593
           Y+L       AG    GR          GE I  +                         
Sbjct: 600 YSLKVYMIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFIFMATRKGTVKKTV 659

Query: 594 --------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                         I+L+    +V   V +  C +++ SS G A    ES++ A  R  +
Sbjct: 660 LTEFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAMGRSSR 719

Query: 640 TFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
               +   E    + +V+ + G  V  V EN       +D+ P   RG
Sbjct: 720 GVRGIRIAEGQFIVGMVIPLAGGQVLTVSENGYGKRTPVDEFPAKGRG 767


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 375/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y ++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/714 (35%), Positives = 412/714 (57%), Gaps = 51/714 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + VK  ++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+++M+++G+     +KK
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VI K HPHGD SVYD++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++ ++++ +DF+  ++ E+ EPVV P++FP+LL NGT+GIAVGMAT+IP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA ++NPEI +  L+E+I GPD PTG +I+ ++  I  +Y  G G   +R+
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTK-GIRNAYETGNGSIMMRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E   G + I+VTEIPYQV + RLIEKIAEL+  KR+  + D+R+ES  +   ++ 
Sbjct: 244 KCEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++P +++ ++F L+ ++  + +NM  L  G+ P+V+ L  I+  ++ H+ EV+ R
Sbjct: 304 ELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQ-PKVLNLKEIIAAYIKHQVEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+G  IA  +ID IIAIIR   N+++    ++S FS +E Q  AI
Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I+ E  NL+     +  +L +  +    I  E+ EV  +     D
Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEV--MIKHGDD 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RRT     S  D     + +I +E + + ++N G+I        RS       +  +
Sbjct: 481 ---RRTEIVRGSDFDIE--DEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLN 597
              + D +K  L   T D +L  +  G     KAYT+P      GR   G  I  +I++ 
Sbjct: 536 GTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPE----YGRTAKGLPIVNIIEIA 591

Query: 598 HNQDIV----------TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
            +++I             F++ +T   +V  +  +AF         N R  G   L +  
Sbjct: 592 QDEEISAIIPVKEFNENEFLFFATRTGVVKRTTLSAF--------GNIRTNGLIALSLRE 643

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           ++++  V K TG + + +     KL+ F  DQ+  M R   GVR  + ++G ++
Sbjct: 644 DDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVA 697


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/770 (34%), Positives = 430/770 (55%), Gaps = 59/770 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSA
Sbjct: 9   VSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +++D +D++D Y+  + EPVVFP++FPNLL NGTSGIAVGMAT+IP H++
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHHL 188

Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            E  +A LA+  NP+I+I++++E ++ GPDFPT G I+  R  I ++Y  G+G   +RA+
Sbjct: 189 GETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQIL-GRSGIRKAYETGKGSITIRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+       I+VTE+PYQV K++LIEKIAEL+  K++  + D+RDES  +   ++  
Sbjct: 248 LNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRIVIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  + ++T F +NM  L  G+ P+V+ +   L  +L H++ ++ RR
Sbjct: 308 LRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQ-PRVLNIKQCLSYYLEHQKVIIKRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  ++DE+I +IR+    D  +  ++ RF L+E Q  AIL
Sbjct: 367 TQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMERFKLSEKQAQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L A  E++ ++L   ++    I  E+ E+KE + +    
Sbjct: 427 DMRLQRLTGLEREKIEDEYKELQALIEELKAILADEEKVLEIIREELTEIKEKYKED--- 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RRT    V+        + +I +E I + ++++G+I+ L + +          +  + 
Sbjct: 484 --RRTEI--VAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPASTYRTQKRGGRGIQGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589
             E D ++  +   T D IL  +  GK Y                +P  NLL     GE 
Sbjct: 540 TNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTAKGIPIINLLQVE-KGEW 598

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  +I +N          +D    L   +  G A      E   N RKG        EE 
Sbjct: 599 VNAVISVNQ---------FDEEAYLFFTTKHGIAKRT-SLEKFRNIRKGGLIAVGLREED 648

Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICF 703
             + V++T     + +  +N  L+ F   QI  M R     KG+ L+     G   V+  
Sbjct: 649 ELISVRLTDGQKEMMIATKNGYLIRFEETQIRSMGRTAAGVKGISLR-----GDDVVVSM 703

Query: 704 KICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +I E G   +    + + +  ++       RGG G    K   ++G  ++
Sbjct: 704 EIIEPGSKILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDEKTGNVVA 753


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 361/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 VEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDE+I +I+N   P   K  +VSR            
Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++++        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELETVRDVYGDE-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/606 (40%), Positives = 348/606 (57%), Gaps = 55/606 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G      + KSARIV
Sbjct: 11  VNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 THELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALID PE+ ++ L++YI GPDFPT GII      I  +YR GRG  R+RA+  +E
Sbjct: 191 VNGLLALIDEPELDVDALMQYIPGPDFPTAGII-NGVGGIQLAYRTGRGRVRIRAKADIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +     R 
Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + +E+ F +NM  L  GR PQ++ L  IL+ +L HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQLESVFGINMVALVDGR-PQLVNLKQILEAFLRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------PVMV--------- 418
           ++    R  +L+GL +A  NIDE+I +I+  D P+            P +V         
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAATGA 428

Query: 419 ----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                            R+ LTE Q   IL +RL  L  LE+ ++  E   LL     + 
Sbjct: 429 EASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIRALI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   +     I  E+ E+K  F      G  R +    S  D   L   +I  E + V
Sbjct: 489 EILEDPEVLLQVIRTELNELKAEF------GDDRRSEIRASEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+         R+ K      SA   K+ D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL 580
           LP   L
Sbjct: 601 LPVHQL 606


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/637 (39%), Positives = 376/637 (59%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++MPL  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+
Sbjct: 425 ERAGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILASSERLMEVIREELELIRDQF------GDKRRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/633 (39%), Positives = 392/633 (61%), Gaps = 41/633 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +K V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      +K
Sbjct: 8   DRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYD++VR+AQ F  RY  I GQGNFG+IDGD AAA RYTEA
Sbjct: 68  SARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L+ +++D VDF   ++E + EP V P++ P+LL NG++GIAVGMAT+IP H
Sbjct: 128 KMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP+I+I++L+ +I GPDFPT GI++  +  I E+YR GRG  ++R+
Sbjct: 188 NLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILL-GKSGIKEAYRTGRGRIKIRS 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           +  +E   +G   IVVTEIPY V KS+L+EKIAEL+  KR+  + D+RDE+   + +RIV
Sbjct: 247 KVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRIV 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV------PQVMPLDGILKEWLA 366
           +  K R  +  +++  ++  + ++  F + M  L           P+V+ L  +L  ++ 
Sbjct: 307 IELK-RDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H++E++ RR+ F ++  + R  IL+GL IA  NIDE+IA+IR   +  + K  ++ RF+L
Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMERFAL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           TE Q  AIL++RL+ L  LE  +I+   +EL  ++AE +   ++L   +   N I  E+ 
Sbjct: 426 TEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEYK---AILADEQLVLNIIKDELT 482

Query: 481 EVKEIFSKSTDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
           E+KE +        RRT+F  +V   D     + +IE+E + + +++ G++        R
Sbjct: 483 EIKEKYGDE-----RRTSFDIDVEDFD----VEDLIEEEEVVITMTHIGYVKRISADTYR 533

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
           S K     ++AL  +E D ++      T   +L  S  GK Y L A  +  G     G A
Sbjct: 534 SQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVPEGGRTARGTA 593

Query: 590 IQLLIDLNHNQDIVTAF-VYDSTC-KLLVVSSK 620
           I  ++ L+ ++ I T   V + T  K L++++K
Sbjct: 594 IVNILQLDPDEKITTMIPVKEFTADKCLIMATK 626


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/696 (36%), Positives = 394/696 (56%), Gaps = 62/696 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F  +++KSA
Sbjct: 16  IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP+I+++K++E I GPDFPTGGII+     +  +Y  GRG   +RA+ 
Sbjct: 196 GEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GLSGVRAAYETGRGSIIMRAKV 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+   
Sbjct: 255 EIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            + +  ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R EV+ RR+
Sbjct: 315 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM-------- 417
            + ++    R  +L GL +A  NIDEIIA+IR    P+           P M        
Sbjct: 374 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 433

Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L S
Sbjct: 434 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  ++E F+       RRT F   S   ++   + +I  E + V +S+ 
Sbjct: 494 RVRIMCIVKDELSALREEFATP-----RRTVFGFGSAEMES---EDLIAPEDMVVTVSHS 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G A+  ++ L   + I T           S   ++  +++G     + 
Sbjct: 606 LPLGTPQS---RGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           S+ +   R GK  +K+  E+++ L V+   +H  VV
Sbjct: 663 SDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 697


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 281/773 (36%), Positives = 453/773 (58%), Gaps = 51/773 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+    V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLLEDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+   SEP V PS+ PNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +IDN   +++ +LE + GPDFPTGGII   +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIY-GKMGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            RVRA+  +E+  +    IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  E 
Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++  +F  + ME+ F + +  ++  + P++  L  +L+ ++AHR
Sbjct: 300 IRVVIELKRDAM-SEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + ++ RRS F ++    R  IL+GL+IA  NIDEII IIR   + ++ K  +V +FSL+E
Sbjct: 358 KTIIIRRSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL +RL+ L  LE  +I +E   L  +   ++S+L S ++  + +  E+ E+KE 
Sbjct: 418 LQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRS--LKSHSVDLSA 542
           FS      +R+T   E    D  ++  + +I  E + V +S+RG+++   LK++      
Sbjct: 478 FS-----SKRKTQIEE----DYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRG 528

Query: 543 LHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLI 594
              K      E D ++    A+T D I+ ++  G+ Y L    +  +GR   G+A+  LI
Sbjct: 529 GKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLI 588

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEE 648
           +L+ ++ I   +T   ++    L+  +  G   IV+ + +   +N R  G   + +   +
Sbjct: 589 NLSPDEKIMATITTTDFNDDKSLVFFTKNG---IVKRTNLKEYSNIRSVGVRAINLDEND 645

Query: 649 KMKLVVKVTGDHVA---VVGENRKLLIFSIDQIPEMSR-GKGV---RLQSYKDGGISDVI 701
           ++ +   + G  V    +  +    + F ID++ E+ R G+GV   + ++ +D  I+   
Sbjct: 646 EL-VTAHIVGSSVKELFIATQQGMCIRFGIDELREIGRVGRGVTGIKFKASEDCVIAATT 704

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLS 752
                + L  +   G      +  L G   L  R G G +V K  P++GK +S
Sbjct: 705 ITSDTDKLLTVSEQG----IGKQTLAGEYRLQSRAGKGVIVMKLTPKTGKLVS 753


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 380/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS       RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFSSP-----RRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 354/571 (61%), Gaps = 23/571 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K +++   +   ++ YA+S I  RA+PD+RDG KP HRRI++AM+++G+      KKSA
Sbjct: 8   IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKPHKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 68  RIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  I++ ++++ V+F+D Y+  + EP V PS+FPNLL NG+SGIAVGMAT+IP H +
Sbjct: 128 SKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  GRG   VRA+ 
Sbjct: 188 GEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSLIVRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+  +    I+VTE+PYQV K+RL+EKIA+L+  K+I  + D+RDES      V+   
Sbjct: 247 EIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRVVMEI 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++ +++  + M+T F +NM  +  GR P+ + L  +L  +L H++E++ RR+
Sbjct: 307 RRDANASVILNNLYKQTSMQTTFGVNMLAIVSGR-PRTLTLKEMLYHYLEHQKEIVRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L GL IA  ++DE+I II   R  D  +  ++ RF L+E Q  AIL+
Sbjct: 366 QFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMERFELSEKQSQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I +E D ++A   ++  +L S +     I  E+ EVKE F+      
Sbjct: 426 MRLQRLTGLEREKIDAEYDEIMALITELKRILESDEVLLELIRTELEEVKERFND----- 480

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
           +RRT      R D    + + +I ++ I + +++ G+I+ L + S          +  + 
Sbjct: 481 QRRTEI----RMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDSYRAQRRGGRGVQGIG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             + D +   L   T D IL  +  GK Y +
Sbjct: 537 TNDADYVTRLLSCSTHDTILFFTNRGKVYRI 567


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 267/773 (34%), Positives = 437/773 (56%), Gaps = 63/773 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+ +V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 6   KQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 126 ARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+DNP+++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR
Sbjct: 186 HNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSIIVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  ++E+  G   I++TE+PY V K++LIE+I+EL   KRI  +  +RDES+     ++
Sbjct: 245 GRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +I+ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+ 
Sbjct: 305 IEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQKEVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F  +  + R  IL+GL IA  +IDEIIAIIR   ++D  K  ++ RF  ++ Q  A
Sbjct: 364 RRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIERFDFSDRQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I++E   LLA    +  +L          A   R V+ I  +  
Sbjct: 424 ILDMRLRRLTGLEREKIENEYQELLAFIADLTDIL----------ARPERVVQIIKEELL 473

Query: 491 DLGRRRTTFCEVSRAD------KATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
           DLG+R   F +  R +       +   + +IE+E I + ++N G+I        R+ +  
Sbjct: 474 DLGKR---FGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVANTEFRAQRRG 530

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581
              +  +   + D +K  +   T D +L  +  GK Y                +P  NLL
Sbjct: 531 GRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPEYGRTAKGIPVINLL 590

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            G    E IQ +I +  N +    +++ +T   +V  +   AF    S I +N   G   
Sbjct: 591 -GIDSSERIQAIIAVK-NHEAAEQYLFFTTKLGVVKRTDVQAF----SNIRSN---GLIA 641

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGG 696
           + +  ++++  V++  G    ++G +    + F+   + +M R     +G+RL+   D  
Sbjct: 642 IGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLRE-GDYV 700

Query: 697 ISDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +   I     E L   ++  G+    SE  + G  GK     ++ PK  P +G
Sbjct: 701 VGTAILTPESEVLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAG 753


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I+N EI+I++L+ YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 NIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++ L+ ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NIDEII +I+N   P   K  ++SR            
Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++++        RRT   E+  A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S  G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           KAY+L
Sbjct: 597 KAYSL 601


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/650 (38%), Positives = 382/650 (58%), Gaps = 29/650 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      +KSA IVGEV+ K
Sbjct: 17  MKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKSAYIVGEVLAK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVRLAQ F  RYPL+ G GNFG++DGDSAAA RYTEARM ++   +L 
Sbjct: 77  YHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEARMARITLEMLA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+F   Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +  + 
Sbjct: 137 DIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHNLGEVIDGVIM 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP+ +I  L+  I GPDFPTGG I+  RE I ++YR GRG  +VRA+  +E++G G 
Sbjct: 197 LIDNPDANIRDLMSVIKGPDFPTGGKIM-GREGIWDAYRTGRGSIKVRAQASIEKIGGGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV+EIPYQV K+RLIEKIAEL+  K+I  + D+RDES      ++    R  +P ++
Sbjct: 256 HSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIELRRDANPQVV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + M+  F + M  L  G  P+V+ L  +L  +L H+++V+ RR+ F +   + 
Sbjct: 316 LNQLYKHTQMQDSFGVIMLALVEGE-PRVLNLKEVLFYYLQHQKDVVVRRTRFELNRAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  I++GL IA  ++DE+I  IR+   P   +  ++ +F LTE Q +AI+ +RLR L  L
Sbjct: 375 RAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEKFGLTEKQAEAIVEMRLRQLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +++ E   L+ +   + S+L+  ++    I  E+  VK+ F+       RRT    +
Sbjct: 435 EREKLEQEYRELVEKIAYLRSVLDDERKVLGIIKDELLAVKKKFADP-----RRTA---I 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +  + A  ++ +I +E + + I+++G+I        RS +     ++A+  KE D ++  
Sbjct: 487 TSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMGTKEEDFVRHL 546

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---YD 609
               T    L  +  GK Y L    +  +GR   G AI  L+ +   + I T      +D
Sbjct: 547 FITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKGTAIVNLLYIGSEEKITTVIPVREFD 606

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658
               L + + +G       +E   + R G   + +S  E   LV VK+TG
Sbjct: 607 PAQYLFMATKRGIVKKTPLNEYDTSRRDG--IIAISLNEGDHLVDVKLTG 654


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/645 (39%), Positives = 373/645 (57%), Gaps = 62/645 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I N +I+I++L+EYI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 TEVINGCLAYISNEDITIDELMEYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+V+EIPYQV K+RLIEKIA+L+  K++  +  +RDES +D   ++   
Sbjct: 247 EIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR+
Sbjct: 307 RRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  IL+GL +A  NIDEII +IR    P   K  +VSR             
Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + LTE Q  AIL+LRL  L  LE  +I  E   LL E  
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L++ ++    I  E+   ++ F  +     RRT   E++ A      + +I +E 
Sbjct: 486 ELIHILSNTERLMEVIREELEMARDNFGDA-----RRT---EITAASHDIDMEELIARED 537

Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST GK
Sbjct: 538 VVVTLSHEGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGK 597

Query: 572 AYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
            Y L    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 598 TYRLKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 281/766 (36%), Positives = 447/766 (58%), Gaps = 47/766 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   KNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL SGQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A + NPEISI++L E I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQIL-GKSGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES  + +RIV+
Sbjct: 246 VAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  + ++++ +++  + +ET F + +N+  +  VP+++ L  ++K ++ H++ V+ 
Sbjct: 306 EVK-RDANANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYIEHQKNVVR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +    +R  I++GL+IA  NIDEII IIR   + D+ K +   RF LT+ Q  A
Sbjct: 364 RRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNERFGLTDLQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           IL+++L+ L  LE  ++++E D  LAEK E   S+LN  ++    I  EI E+KE F+  
Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLIGVIEEEILEIKEKFADD 482

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT        D+     + +IEKE + + +++ G+I+ L  ++          +
Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
           SA + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  +I L  
Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQAIINIISLAT 593

Query: 599 NQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+   DI+         +L+  + KG      ++++  N ++    + +S E+  +LV  
Sbjct: 594 NEKITDIMELSELSDNSQLVFQTEKG-KIKKTDAQLFTNIQRN-GIIAISLEDDDRLVSI 651

Query: 656 VTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEG-- 708
              DH   + V  +    + F+   I  M R  +GVR ++  KD    +V+   I E   
Sbjct: 652 RQIDHPCDIIVTTQKGMAIKFASSDIRSMGRNARGVRAIRLSKD---DNVVSMNIVEDEV 708

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  + + G     S N+       RGG G    K   ++G  +++
Sbjct: 709 YLLVVTANGFGKKTSFNNFNNQ--NRGGKGVRCHKITEKTGNVVAT 752


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/638 (39%), Positives = 369/638 (57%), Gaps = 64/638 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSA
Sbjct: 8   VSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF D Y+  +  P V P+K PNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 128 EKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LALIDNPEISIE+L+E+I GPDFPT   I   R  IVE+Y+ GRG   +RA+ 
Sbjct: 188 TEVINGTLALIDNPEISIEELMEFIPGPDFPTAASI-SGRSGIVEAYKTGRGRIHLRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L  G+ P++  L  +L  ++ HRREV+ RR
Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQ-PKLFNLYQVLDAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           S + ++    R  IL+GL I+  NIDE+I +IR    P   K  +V+R            
Sbjct: 366 SVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL + 
Sbjct: 426 SAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E++  +L S ++    I  E+ E+++ F  +     R+T   E++ A      + +I +E
Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDA-----RKT---EITAAAHDISMEDLINEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      +A   K+ D ++    A+T D IL  ST G
Sbjct: 538 DVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRG 597

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
                K Y LP   L S    G+ I  L+ L  ++ I 
Sbjct: 598 RIYWMKVYQLP---LASRASRGKPIVNLLPLESDERIT 632


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 378/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGII   +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+  + 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTTII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + ++   + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/652 (38%), Positives = 379/652 (58%), Gaps = 67/652 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  ++NPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +  +R+
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R+ +   ++  I  L+ + + F +N  VL+  R P +M L  I+  ++  R+EV
Sbjct: 300 VIDLK-RNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIITAFVDFRKEV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           L RR+ FR++    +  I  GL IA L+IDE+I IIR    P                  
Sbjct: 358 LIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEI 417

Query: 417 -----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                ++S          + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  
Sbjct: 418 NTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYI 477

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           + L SG++   +I   ++E+K  F+        R T  E S AD     + +I +E + +
Sbjct: 478 AFLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEESDADIEA--EDLIPQEDMVI 529

Query: 523 VISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++  G+I+ +K SH                KE D +      +T    L  S  G+ Y 
Sbjct: 530 TVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYR 589

Query: 575 LPAGNL----LSGRGH----------GEAIQLLIDL----NHNQDIVTAFVY 608
           L    L     + RG           GE I  ++ L    + NQ+IV A  Y
Sbjct: 590 LKVYKLPLAEPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAY 641


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/708 (35%), Positives = 395/708 (55%), Gaps = 62/708 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F  +++KSA
Sbjct: 16  IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 EKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I++++++E I GPDFPTGGII+  R  +  +Y  GRG   +RA+ 
Sbjct: 196 GEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+RDES  D   V+   
Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R EV+ RR+
Sbjct: 315 KREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418
            + ++    R  +L GL IA  NIDEIIA+IR    P+   V                  
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVAPLIKL 433

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      + ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +  +   +L+S
Sbjct: 434 IDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITEYLHILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  ++E F        RRT F      +     + +I  E + V +S+ 
Sbjct: 494 RLRIMGIVKDELSTLREEFVTP-----RRTVF---GFGNAEMNNEDLIVPEDMVVTVSHS 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     ++T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   + +  G A+  ++ L   + I T           S   ++  +++G     + 
Sbjct: 606 LPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 663 SDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/623 (39%), Positives = 381/623 (61%), Gaps = 42/623 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQNNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L  +
Sbjct: 299 DREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLCLF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF
Sbjct: 357 LNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ E
Sbjct: 417 TLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           VKE FS       RRT   E+  + +    + +I  EP+ V +S +G+++      VDL 
Sbjct: 477 VKEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLK 523

Query: 542 ALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
           A   +             E D ++    A+T D +L ++  G     K Y +P  + ++ 
Sbjct: 524 AYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA- 582

Query: 584 RGHGEAIQLLIDLNHNQDIVTAF 606
              G+A+  LI L  ++ I+   
Sbjct: 583 --MGKAVVNLISLAPDEKIMATL 603


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 278/772 (36%), Positives = 448/772 (58%), Gaps = 49/772 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+N   V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLIEDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+    EP V P++FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +ID     +E LL+ + GPDFPTGGII   +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIY-GKAGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            RVRA+  +E+  +    IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  E 
Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++  +F  + ME+ F + +  ++  + P++  L  +L+ ++AHR
Sbjct: 300 IRVVIELKRDAM-SEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + ++ RRS F ++    R  IL+GL+IA  NIDE+I  IR   + D+ K  +VS+F L+E
Sbjct: 358 KTIIIRRSIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSKFKLSE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL +RL+ L  LE  +I  E   L A+   ++S+L S  +  + +  E+ E+KE 
Sbjct: 418 LQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLKSIVKEELLEIKEK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLSAL 543
           FS      +RRT   ++     A   + +I  E + V +S+RG+++   LK++       
Sbjct: 478 FST-----KRRT---QIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGG 529

Query: 544 HFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLID 595
             K      + D ++    A+T D I+ ++  G+ Y L    +  +GR   G+A+  LI+
Sbjct: 530 KGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLIN 589

Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649
           L  ++ I   +T   ++    L+  +  G   +V+ + +    N R  G   + +   ++
Sbjct: 590 LQADEKIMATITTTDFNEDKSLVFFTKNG---VVKRTNLKEYGNIRSIGVRAINLDENDE 646

Query: 650 MKLVVKVTGDHVA--VVGENRKLLI-FSIDQIPEM---SRG-KGVRLQSYKDGGISDVIC 702
           + +   +   H+    +   + + I F ++++ E+   SRG  G++ ++ +D  I+    
Sbjct: 647 L-VTAHIVDSHIKELFIATYQGMCIRFGVEELREIGRVSRGVTGIKFKASEDCVIAATTI 705

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLS 752
               + L  +   G      +  L G   L  R G G +V K  PR+GK +S
Sbjct: 706 ANDTDKLLTVSERG----IGKQTLAGEYRLQSRAGKGVIVMKLTPRTGKLVS 753


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +S    LV ++K    +V+ S  ++N     R GK  +    ++++  V   +G    
Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663

Query: 663 VVGENRKLLI 672
           ++G +   LI
Sbjct: 664 LIGTSHASLI 673


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/638 (39%), Positives = 377/638 (59%), Gaps = 65/638 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++ +I+I++L+EYI GPDFPT  +I   R+ IV++Y+ GRG   +RA+ 
Sbjct: 188 GEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMI-SGRKGIVDAYKTGRGKVYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + + ++    R  IL+GL +A  NIDEII ++R    P   K  +++R            
Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+  VKE FS +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILSSSERLMEVIREELELVKEQFSDA-----RRT---EITAASHDIDMEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      +A   KE D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
                K Y LP   L S    G+ I  ++ L  N+ I 
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 631


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/616 (38%), Positives = 377/616 (61%), Gaps = 36/616 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 R+T    V++ ++  L+  +++ E + V +++ G+I+ +        K     +
Sbjct: 478 P-----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GH 586
             +  +E D ++      T DR+L  +  GK Y+L   ++  +GR               
Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQ 589

Query: 587 GEAIQLLIDLNHNQDI 602
           GE +  +I L  +QDI
Sbjct: 590 GEKVTAVIPLKKSQDI 605


>gi|332685541|ref|YP_004455315.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
 gi|332369550|dbj|BAK20506.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
          Length = 815

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 354/572 (61%), Gaps = 20/572 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   MRENIQDVNLTGEMKESFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY LI G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLIDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VD+   Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKDTVDYHGNYDDTEREPDVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ EA   L+D PE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLAEVVEAIDLLMDKPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K+RLIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTELPNGKERILVTELPYMVNKARLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ L+ ++T F  NM  +  G VP+++ L  IL+ ++ H++ V+
Sbjct: 304 IIDVRRDVSASVVLNNLYKLTALQTSFGFNMLAIEKG-VPKILSLKQILENYVEHQKVVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +    R  IL+GL IA  +IDEIIA IR   ++D+ K  ++ RF L++ Q  
Sbjct: 363 KRRTIFDKKKAQSRAHILEGLRIALDHIDEIIATIRQSQSDDEAKSALIGRFELSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E   LL     ++ +L S ++    I  E+ ++++ FS  
Sbjct: 423 AILDMRLRRLTGLERDKIEQEYQELLKLISDLEDILASPERIVEIIKKELADIRDRFSD- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
               +RRT                  EK  + V ++N G+I+ + +            + 
Sbjct: 482 ----KRRTELLIGEVLSLEDEDLIEEEK--MVVTLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +     D +K  +   T D +L  + +GK Y
Sbjct: 536 GMGVHADDFVKNLVSCSTHDTLLFFTNNGKVY 567


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/608 (39%), Positives = 374/608 (61%), Gaps = 25/608 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    +
Sbjct: 4   LPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKS 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RY
Sbjct: 64  YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+I
Sbjct: 124 TEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    L+L  NP+I+I +L+E I GPDFPT GII+  +  I  ++  GRG  +
Sbjct: 184 PPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIIL-GKSGIRRAFETGRGSIQ 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDV 309
           +R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    V
Sbjct: 243 LRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGV 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  + +  +  +++ +++  + ++T F +NM  L  GR P+++ L   L E+L H++
Sbjct: 303 RVVIDIR-KDANASVVLNNLYKQTPLQTSFGVNMIALVNGR-PKLISLKDALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  D  K  M S   +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + L+A  E++ S+L   ++    +  E+ +V+E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSILADEEKLLQIVRDELIDVRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                 G  R T  ++   D     + +I +E I + +S+  +I+ L   +         
Sbjct: 481 ------GDERKTEIQLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +  LS +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVT 604
           ++++ I T
Sbjct: 594 DNDESIST 601


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/614 (39%), Positives = 378/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L  +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + +    + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYEKQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/625 (39%), Positives = 379/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VR +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRTKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+  I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIE 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/599 (40%), Positives = 365/599 (60%), Gaps = 33/599 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+   F   +KKSAR+VG+VIGK
Sbjct: 11  LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVVGDVIGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+++A   L 
Sbjct: 71  YHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRLASEFLA 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V FR  Y+   +EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+  L 
Sbjct: 131 DIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP   I +LL  + GPDFPTG  I   +  ++E+Y  GRG  ++R +  +EE  +  
Sbjct: 191 QLDNPTCDINELLALVKGPDFPTGASIYGGK-GLIEAYTTGRGSIKIRGKAEIEERKKDH 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +V+ EIPY + KS L+EKIA LI   RI  + D+RDES  + +RIVL  K + + PD+
Sbjct: 250 QSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLK-KGVIPDI 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +ET F +NM V++  R P ++ +  +L+ +L+HRREV+ RR++F ++  +
Sbjct: 309 VINALYKYTPLETSFGINMLVVADNR-PALLNIQQVLEHFLSHRREVVLRRTAFDLRKSE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NIDE+++IIR   N  + +  ++ RF L+E Q  AIL++RL+ L  
Sbjct: 368 ERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMERFGLSERQAQAILDMRLQRLTN 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E + L+   E + S+L + +     I  EI E+K+ ++       R+T   E
Sbjct: 428 LERQKLIDEYNELIKLIEYLRSILENEEVLRGVIRDEITEIKDKYATP-----RKTEILE 482

Query: 502 ----VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDS 550
               ++  D       +I  E + + +S RG+I+  K  S        K        GD 
Sbjct: 483 DLEGINILD-------LIPDEDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGDD 535

Query: 551 LKIALHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
              +  A T  + LLL T+ G+ + LP   +  G+    G  I  L+ ++  + + TA 
Sbjct: 536 FVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 361/572 (63%), Gaps = 23/572 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KKS
Sbjct: 3   NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNPE++   L+EYI GPDFPTGGII + ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGII-DGQKGIRDAYMTGRGKVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE   G   I++ EIPYQ+ K+ LIE+IA+L+  KR+  + D+RDES  D +R+V+ 
Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  ++++  F + M  L +   P+V+ L  IL+E+L HR EV+ R
Sbjct: 302 VK-KGEEPELILNKLYKYTELQNTFGIIMLAL-VNNAPKVLNLKEILQEYLKHRFEVVTR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R  IL+G  IA  NID II IIR   + ++ + +++ +++ ++ Q  AI
Sbjct: 360 RTKFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E   +     ++  +L+   + +  I  E+  +KE ++    
Sbjct: 420 LDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDD-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543
               R T  E  R +   L + +I+ E + + ++N+G+++ +        K     +++ 
Sbjct: 478 ----RRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQ 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  E D ++    A   D +++ +  G+ + +
Sbjct: 532 NTIEDDFVESIESASNLDTLMIFTNQGRVFNI 563


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/695 (35%), Positives = 404/695 (58%), Gaps = 29/695 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+ +  +
Sbjct: 1   MVIGNTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D+D V+F   +++   EP V PS+ P LL NG SGIAVGMAT+I
Sbjct: 121 TEARLTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNPE  +E L++++ GPDFPTGG+I+  R+ I  +Y  G G   
Sbjct: 181 PPHNLTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLIL-GRDGIKSAYATGHGKVV 239

Query: 252 VRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VRAR  V +V        I+++E+PYQV K+ L+++IA L   ++I  + ++RDES    
Sbjct: 240 VRARAHVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  +P  ++ +++  ++++T F +NM  L   R P V+ L   L  ++A R+
Sbjct: 300 LRVVIELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNR-PVVLNLKEALNHYVAFRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           E++ RRS F ++A   R  IL+GL IA  N+D II +IR   N D  +  ++SRF L++ 
Sbjct: 359 EIITRRSKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+L+LR L  LE  +I  E  ++L +   ++ LL + ++  + +  ++ EVK  +
Sbjct: 419 QAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540
             +     RRT     S+      ++ +I  + + V ++ RG+I+ + +    L      
Sbjct: 479 GDA-----RRTEIQ--SQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGR 531

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLID 595
             S +  +E DS++  + A T D +LL +  GK +++    +   L     G AI  L+ 
Sbjct: 532 GKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVP 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMK 651
           L  N+ I +      +D    L++ +S G     + S+  A    G   + +  ++E + 
Sbjct: 592 LAENERITSMIAVSRFDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIG 651

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
            V+    +++ ++  N + + F +  +    R  G
Sbjct: 652 AVIAGADENIILITHNGRSIHFPVADLRVSQRASG 686


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/626 (39%), Positives = 370/626 (59%), Gaps = 66/626 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V   +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TGVAREILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG+IDGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  + EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTEVRMARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A +AL+D+PE+ +E L+EY+  PD PTGGII  +   I +++R GRG  
Sbjct: 182 IPPHNLREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGT-AGIHQAFRTGRGRM 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +RAR  VEE+      IVVTE+PYQV K+RL+EKIAEL+  +R+  + ++RDES  E +
Sbjct: 241 VLRARAEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGI 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL  K R    ++++ +++  + M+T F +N+  L  G+ P+ + L  +L+ ++ HRR
Sbjct: 301 RIVLELK-RGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQ-PRTLNLRQVLEAFIRHRR 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P   K  +V+R      
Sbjct: 359 EVVTRRTIYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGV 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + L+E Q  AIL+LRL  L  +E+ +I  E
Sbjct: 419 VTEMLERAGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
             NLL    ++  +L+SG++    I  E+  +++ +        R+T      R D A L
Sbjct: 479 YSNLLERIAELIHILDSGERLMEVIREELVAIRDQYGDE-----RKTEI----REDTAEL 529

Query: 511 Q-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I +E + V +S+ G++        R+ +      SA   K+ D +     A+T D
Sbjct: 530 SLEDLISEEDMVVTLSHHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHD 589

Query: 562 RILLLSTDGKA-----YTLPAGNLLS 582
            +L  S+ GK      Y LP G+  S
Sbjct: 590 TLLCFSSTGKCYWRKVYELPQGSRTS 615


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 345/554 (62%), Gaps = 40/554 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  +  L+ + + F +N  VL+  R P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               ++S          + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+        R T  E S AD     + +I +E + + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEESDADIEA--EDLIPQEDMVIT 530

Query: 524 ISNRGWIRSLK-SH 536
           ++  G+I+ +K SH
Sbjct: 531 VTMNGYIKRVKLSH 544


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/645 (40%), Positives = 376/645 (58%), Gaps = 60/645 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G 
Sbjct: 4   SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGN 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 64  DWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVG
Sbjct: 124 AAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  LA ID+  ISIE LLEYI GPDFPT  II   R  I+++YR G
Sbjct: 184 MATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAII-NGRRGIIDAYRTG 242

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES
Sbjct: 243 RGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALRDES 302

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K R    ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+ +
Sbjct: 303 DKDGMRIVIEVK-RDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQ-PRLLNLKEILEAF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P   K  +++R 
Sbjct: 361 VRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIARP 420

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + LTE Q  AIL+LRL+ L  LE  +I
Sbjct: 421 WQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHDKI 480

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL +   +  +L S ++    I  E+  VKE +        RRT   E S AD 
Sbjct: 481 LDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRDV-----RRTEITENS-ADI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+++        + +      SA   KE D ++  L A+T
Sbjct: 535 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592

Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
            D IL  S+ G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERI 637


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 257/636 (40%), Positives = 371/636 (58%), Gaps = 62/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  NID II +IR    P     S               
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE
Sbjct: 425 ERAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+  +K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDG-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
            G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/646 (37%), Positives = 388/646 (60%), Gaps = 31/646 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    +++KSA IVG+V+  
Sbjct: 17  MKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKSAGIVGKVMQD 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEARM ++   +L 
Sbjct: 77  FHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEARMAKITLEMLA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+    EP + PSK PNLL NG+SGIAVGMAT+IP HN+ E+ +  L 
Sbjct: 137 DIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHNMGEVIDGVLM 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I +P ++ + L++ I GPDFPTG  I+  ++ I ++YR GRG  ++RA+  +E    G 
Sbjct: 197 MIKDPNVTPDDLMKVIKGPDFPTGATIM-GKDGIRQAYRTGRGSVKMRAQTTIETKANGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES    +RIV+  K  S +P++
Sbjct: 256 PVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIELKKDS-NPNV 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + M+  F + M  L +   P+V+ L  ++  +L H+++V+ RR+ + ++  +
Sbjct: 315 ILNLLYKHTQMQESFGIIMLAL-VNNEPKVLNLAQVIFHYLEHQKDVITRRTRYELKKAE 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  I++GL IA  N+DE+I  IR   N ++ +  +V +F+LTE Q +AI+ +RLRSL  
Sbjct: 374 ARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDKFNLTEIQAEAIVEMRLRSLTA 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +++ E   LL + + + S+L   ++  N I  E+  VKE F+ +     RRT    
Sbjct: 434 LEVEKLEKEYKELLEKIDYLRSILADEQKVLNIIRDELLVVKEKFADA-----RRTLISN 488

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
           V+  D     + +I++E + V I+N+G+I        RS K     ++A+  KE D ++ 
Sbjct: 489 VAAGDFDI--EDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTKEEDFVRD 546

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
              A T   +L  +  GK Y L    +   S    G  I  L+  + ++ + T      +
Sbjct: 547 LFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTTVIPIKEF 606

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV 653
           + T  L + +  G   IV+++ +   N+ +    + ++ +EK KLV
Sbjct: 607 EETAYLFMATKHG---IVKKTALTEYNSSRRDGLIAINLDEKDKLV 649


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 362/603 (60%), Gaps = 58/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMS +  D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMKKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALID+P++SI++L+E+I GPDFPT GII   R  IVE+YR GRG   +RAR  VE
Sbjct: 191 VKGCLALIDDPDLSIDQLMEFIPGPDFPTEGII-NGRAGIVEAYRTGRGRVYIRARHEVE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              +     +++TE+PYQ+ KSRLIEKIAEL+  KR+  + ++RDES  E +R+V+  + 
Sbjct: 250 HDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIRVVIELR- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +PD+++ ++F  + +ET F +NM  L  G  P+++ L  +L  ++ HRREV+ RR+ 
Sbjct: 309 RGENPDVIINNLFKQTQLETVFGINMVALIDGE-PRILNLKEMLDAFIRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408
           F ++    R  IL+GL +A  NIDEIIA+I+                             
Sbjct: 368 FELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMAMLERA 427

Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            ED  +P        +   ++ L+  Q  AIL+LRL  L  LE  ++++E   +L     
Sbjct: 428 GEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREILERIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L + ++    I  E++ + E F      G  R T    SR D       +I++E +
Sbjct: 488 LLDILGNPERLMQVIRDELQAIVEEF------GDERRTEITSSRRDLTVAD--LIDEEEL 539

Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++                +A   K+ D ++  L A++ D IL  S  GK 
Sbjct: 540 VVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKV 599

Query: 573 YTL 575
           Y L
Sbjct: 600 YWL 602


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 408/697 (58%), Gaps = 35/697 (5%)

Query: 14  EEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           E+N ++   L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+   A  
Sbjct: 67  EQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTAPH 126

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYT
Sbjct: 127 KKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMRYT 186

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A +++ G+ ++ VDF D Y+  + EP V PS+FPNLL +GTSGIAVGMAT+IP
Sbjct: 187 EARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATNIP 246

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A  AL  NPEI+I+ L+E+++ PDFPTG  I  ++  ++E+Y+ GRG   +
Sbjct: 247 PHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIF-NKAGLIEAYKTGRGSITM 305

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           RA+  ++E+  G   I++TEIPY+V+K+ ++EKIA+ +  KRI  + D RDES  D +R+
Sbjct: 306 RAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIRV 365

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K  ++ P++++ +++ L+ ++T F  NM  L  G  P+++ L   L+ +L H+ +V
Sbjct: 366 VIDVKKNAV-PEVILNTLYKLTRLQTNFSFNMIALVNGE-PKLLNLKECLQVYLDHQIDV 423

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RR  F ++    R  IL+GL I   NID +I II+        +  +   FSL+E Q 
Sbjct: 424 TRRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQA 483

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  L   ++  ELD + A   +  ++L+S ++    I  E++EVKE +  
Sbjct: 484 KAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAYGD 543

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 R      ++  D       +I ++ I + +S+  +I        R  +   V +
Sbjct: 544 KRRSEIRWDVMSSINNED-------LIPQKEIVITLSSNNYIKRIDLEEYREQRRGGVGV 596

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLN 597
           S +   + D ++  + A+T   +L+ + + K Y +    + SG    +    + ++  + 
Sbjct: 597 STVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTIQ 656

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            N+ +V       Y+ +  L+ V+ +G      ++E E+I   + GK  L +  ++ +  
Sbjct: 657 KNEKVVKIICVTDYEESQSLITVTERGVIKKTNLKEYELI--RKNGKYALSLLEDDHLID 714

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           V  V  D  + +   N ++  F++  + EM R  +GV
Sbjct: 715 VRVVDQDEEIFIAASNSRINRFNVADVREMGRVARGV 751


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +S    LV ++K    +V+ S  ++N     R GK  +    ++++  V   +G    
Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663

Query: 663 VVGENRKLLI 672
           ++G +   LI
Sbjct: 664 LIGTSHASLI 673


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/690 (36%), Positives = 414/690 (60%), Gaps = 36/690 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  + +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++A+ E G+      KK
Sbjct: 8   EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y ++V+LAQ F  RYPL+ G GNFG+IDGD+AAA RYTE+
Sbjct: 68  SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ +D+D VD+R  Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +     IDNP+I+IE+L++ I GPDFPTGGI+ E+R  I ++Y  GRG  R RA
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGIL-EAR-GIRQAYETGRGTIRTRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           R+ +EE   G + IVVTEIPYQV K+RL+EKIAEL+  K++  + D+RDES  + +RIV+
Sbjct: 246 RYEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVI 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             + + ++ ++++  +F  + ME  F + M  L  G  P+++ L  +++ ++ HR+EV+ 
Sbjct: 306 ELR-KDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGE-PRILNLKEMIQYYVEHRQEVIN 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR+++ +     R  IL+GL IA  N+DEII +IRN    +  +  + SRF+L+E Q +A
Sbjct: 364 RRTTYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSRFNLSEIQANA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  ++++E + +L      + +L   ++  + I  ++ ++++ +  + 
Sbjct: 424 ILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPERVLSMIKEDLDDIEKRYGDN- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
               RRT   +      +  ++  I+   + + +SNRG++        RS K     +SA
Sbjct: 483 ----RRTEISQEE---SSYEEEDFIDDHEVVITLSNRGYVKRQPLDTYRSQKRGGKGVSA 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQ 600
              +  D     L       +L  +  G+ +T  A  +       + + L+  ++L   +
Sbjct: 536 TTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKGMPLVNFLELRPGE 595

Query: 601 DIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRK-GKTFLKVSSEEKMKLVV 654
            + T   A  ++    LL+V+ KG   I++++ + A  N RK G   + +  ++++  V+
Sbjct: 596 KVTTIVGAREFNREHHLLMVTKKG---IIKKTALKAFQNVRKSGLIAVNLREDDELVGVI 652

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSR 683
           +V TG  V +       ++F   Q+  M R
Sbjct: 653 RVKTGSKVMIANSRGISIMFDEKQVRSMGR 682


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/574 (41%), Positives = 355/574 (61%), Gaps = 31/574 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G+     +KKS+RIV
Sbjct: 13  VDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSSRIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+AAA RYTE+RM+ +
Sbjct: 73  GDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRMSAI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 133 ALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P+ +++ L+  I GPDFPTGG+I+  RE I ++Y  GRG   VRA    E
Sbjct: 193 IDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRGSITVRAVTHFE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES      V+    R 
Sbjct: 252 ELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVIELRRD 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P +++ ++F  + ++T F + +N+  +   P+V+ L   L+ +L H+R+V+ RR+ + 
Sbjct: 312 VRPQVVLNNLFKHTALQTSFGV-INLALVNGEPKVLTLRETLEHYLNHQRDVVRRRTQYD 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  ++DE+I++IR+    D+ +  ++S F L+E Q  AIL++RL
Sbjct: 371 LAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAILDMRL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I++E   L     ++ ++L   K     I  EI E+KE F        RR
Sbjct: 431 QRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEIKERFGDE-----RR 485

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGDSLKIAL 555
           T    +  A+    ++ +I    + + I++RG+I+ L      LS  H  + G      +
Sbjct: 486 T---RIVNAEGEISEEDLIPVHDVVIAITHRGYIKRLP-----LSTYHSQRRGGRGMTLI 537

Query: 556 HAH------------TTDRILLLSTDGKAYTLPA 577
           +AH            T D +L  +  G+ Y + A
Sbjct: 538 NAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKA 571


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 277/761 (36%), Positives = 428/761 (56%), Gaps = 48/761 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+  ++   +KKSAR+V
Sbjct: 11  ISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+ +D++ VD    Y+E  SEP+V PS+ P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A  ALIDNP++S+E L++++ GPDFPT GII    + I E Y  GRG  RVR R  VE
Sbjct: 191 ADAITALIDNPDMSVEALMQHVPGPDFPTCGII-HGTDGIAEGYATGRGKIRVRGRVFVE 249

Query: 260 EVGRGSW--CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           + G+      IVV E+PYQV K+RLIEK+AEL+  K I  +  +RDES  E +RI +  K
Sbjct: 250 K-GKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGLK 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   D+++  ++  + +E  F +NM  +   R P+++ L  IL+ ++ HR+E++ RR+
Sbjct: 309 -RNQFADVVINQLYKHTQLENTFGINMLAVVNNR-PELLTLKEILEYFILHRKEIIVRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE++A+IR    P   +  ++ +F LT+ Q  AIL+
Sbjct: 367 RFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQFGLTQIQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I  E    L +    + +L S +   + I  E+ ++K  F       
Sbjct: 427 MRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIVLDLIKKELADLKAEFGDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   ++    K  L + MI +E + V +S  G+I        R  +      +A+  
Sbjct: 483 -RRT---QIMGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYRKQRRGGRGKTAMGT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +E D +     A + D  L  +  G     K Y +P     S    G AI  L++ N  +
Sbjct: 539 REDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRAS---RGTAIVNLLNFNEGE 595

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVT 657
           D+ T          L V       +V++++I+  +R    G   L ++  +++ + V++T
Sbjct: 596 DLATVLSVPEFSPGLFVLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDEL-IAVRIT 654

Query: 658 GDHVAVV-----GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
                V      G++ + L   +  +  ++RG KG+ L+  KD  +  +        L  
Sbjct: 655 DGSWNVFLGSQNGKSVRFLESDVRPMGRLARGVKGMTLE--KDDHVVGMEVLSHGNTLMT 712

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I   G    R+E D    + +RGG G +  K   R+GK ++
Sbjct: 713 ITENGYG-KRTEIDEYP-VNRRGGKGVITIKTTKRNGKVVA 751


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 358/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  NID II +IR    P     S               
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+  +K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRLY 600


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 371/607 (61%), Gaps = 33/607 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++G  +  A+KKSAR+
Sbjct: 4   TITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVRLAQ F  R  L+ GQGNFG+IDGDSAAA RYTE RM +
Sbjct: 64  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMAR 123

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +    L  ++++ VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E
Sbjct: 124 LCSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGE 183

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + + ++ L+DNPE +IE L++ I GPDFPTGG I    + ++++Y  GRG  ++R    +
Sbjct: 184 LIDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGG-QGLIDAYTTGRGSIKIRGVVEL 242

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           EE  +G    I++ EIPY + KS L+EKIA L+  K+I  + D+RDES  + +RIVL  K
Sbjct: 243 EEARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELK 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++ S++  + +ET F +NM  + +G+ P ++ L  +L  +L HRREV+ RR+
Sbjct: 303 -RGAIADIIINSLYKFTPLETSFGINMMAV-VGKRPMLLNLKEVLGHFLEHRREVIIRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            F +   ++RV IL+GL IA  NIDE++ +IR    P+     ++SRFSL++ Q  AIL+
Sbjct: 361 KFDLDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSRFSLSDIQAKAILD 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  EL  L+ + E   ++L++ +     I  E+ E+K  ++      
Sbjct: 421 MRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVLKGVIRDELNEIKTNYATP---- 476

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
            R++   E+ RAD  ++  + +I  E   + +S RG+I+        + K     ++ + 
Sbjct: 477 -RKS---ELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQ 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599
             +GD +   +       ++L +  GK + +     P G+  +  GH   +  L+ L+ +
Sbjct: 533 TGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGGH---VNNLLPLDKD 589

Query: 600 QDIVTAF 606
           + I T  
Sbjct: 590 EHIATCL 596


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G  +   + KSA
Sbjct: 17  IEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAAHESGYHWNRKYVKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 77  RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTEARL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA  +L+ +D+D VDF+DTY+   SEP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 137 TKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R R 
Sbjct: 197 GEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGRV 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+ G     I++TE+PYQV KS +IEK+AEL+  KRI  + DIRDES      V+   
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+ P+VM L  +LK ++A R EV+ RR+
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLTDMLKAFVAFREEVITRRT 374

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILL 434

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+ + AE      +L+S
Sbjct: 435 IDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSS 494

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I++E + V +S+ 
Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGSDMEDEDLIQREDMVVTVSHS 546

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP GN  S    G+A+  ++ L   + I T               ++  +++G     + 
Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDL 663

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+   D   V +   + + + FS+  +
Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDV 715


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/638 (40%), Positives = 374/638 (58%), Gaps = 62/638 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+GL IA  NID II +IR    P   K  +++            
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE
Sbjct: 425 ERAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+  +K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITA 633


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 251/697 (36%), Positives = 402/697 (57%), Gaps = 50/697 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     FKKS
Sbjct: 8   NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H 
Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 SNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ ++ RR
Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  ++DE+IA+IR     +     ++  +SL+E Q  AIL
Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+ +   
Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEIKERFNDT--- 482

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
             RRT   E+  A   T++ + +I  E I + +++ G+I        RS K     +  +
Sbjct: 483 --RRT---EIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGE 588
              E D ++  +   T D IL  S  GK Y                +P  NLL     GE
Sbjct: 538 GTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVE-KGE 596

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSE 647
            I  +I ++          +D    L   +  G +     S+  AN R  G   L +  E
Sbjct: 597 WINAIIPVSE---------FDENSYLFFTTRHGVSKRTTLSQ-FANIRNNGLIALSLRDE 646

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
           +++  V    G+   ++G  + +LI F    + EM R
Sbjct: 647 DELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGR 683


>gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/694 (37%), Positives = 417/694 (60%), Gaps = 33/694 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG++DGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
               R+T+   V++ ++  L+  +++ E + V +++ G+I+ +        K     +  
Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++  +GR   G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656
            +  V         K +V+ +K    I++++ I    + K    + ++ EE  +L+ VK+
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651

Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
           T G+   ++G  R   I F+   I  M R  KGV
Sbjct: 652 TNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 404/716 (56%), Gaps = 68/716 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 11  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 71  GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKVRVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK +F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKALFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT 635
           L GR   G+AI  ++ +     I      D       +L VV      F   E ++  N 
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVV------FATSEGDVRRNR 653

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691
               T +K + +  MKL   V+  +V++  EN  +++ +       + G+ +R Q+
Sbjct: 654 LSDFTNVKRNGKIAMKLPEGVSLVNVSICDENDDVMMVT-------AMGRAIRFQT 702


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/564 (40%), Positives = 354/564 (62%), Gaps = 25/564 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L  + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTL 575
              +   T D +L  +  G+ Y L
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKL 570


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/710 (36%), Positives = 414/710 (58%), Gaps = 47/710 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ +L YA+S I  RA+PD+RDG KPVHRRI++ M+  G+     +KKSARIVG+V+GK
Sbjct: 18  MKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTEARM+++A  +++
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTEARMSKIAMELMR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L 
Sbjct: 138 DINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLE 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  R  I  +Y  GRG   +RA+  +E    G 
Sbjct: 198 LSKNPDISIPELMELIQGPDFPTAGLIL-GRSGIRRAYETGRGSVIMRAKTLIETRPNGK 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             I+++EIPYQV K+RL+EKIAEL   K++  + D+RDE++  E VRIV+  + R  + +
Sbjct: 257 ETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRIVIDVR-RDANAN 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  G+ PQV+ +   +  +L H++ V+ RR+++ ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMLALVDGK-PQVLNIKQAIYHYLEHQKTVVRRRTAYNLKKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+GL IA  +IDEIIA+IR   N+ +    +  +F L+E Q  AIL++RLR L 
Sbjct: 375 EDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQFKLSERQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I+SE   LL   +++ ++L   ++    I  E+ E+++ +        RRT   
Sbjct: 435 GLERDKIESEYQELLKYIDELRAILADEEKLLQIIREELIEIRDKYGDE-----RRTEIV 489

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
                D     + +I++E I + +S+  +I+ L + +          +  ++  + D + 
Sbjct: 490 AGGLEDLE--DEDLIDEENIVITLSSNNYIKRLPASTYRAQHRGGRGIQGMNTLDEDFVS 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT------ 604
             +   T D +L  +  G+ Y +    +  LS +  G  I  +IDL+ ++ I T      
Sbjct: 548 QMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIPIVNVIDLDKDESISTMIAVKN 607

Query: 605 -----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                A++  +T   L+  S  + F    S I  N   GK  +    E+++  V    G+
Sbjct: 608 LEREDAYIVFATKHGLIKRSNLSHF----SRINKN---GKIAINFREEDELIAVRLTDGN 660

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              ++G     LI F  +++  + R   GV+  S ++G   +VI   + E
Sbjct: 661 KQLIIGTKHASLIRFEENKLRPLGRTAAGVKGISLREG--DEVIGLDVIE 708


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/614 (39%), Positives = 379/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKIAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VY +LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE++ +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKM-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEVKEQFS--- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
              +RRT   E+  A +    + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 483 --SQRRT---EIQEAYENIDVEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  
Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 282/770 (36%), Positives = 439/770 (57%), Gaps = 79/770 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+G+     +KKSARIVG+VIGK 
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEAR+T+ +E IL+ 
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y++   EP V P++ PNLL NG+SGIAVGMATSIP H + EI +AA+ +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I + + S E+LLE++ GPDFPTGGII   ++ I ++YR GRG  +VRA+  +E+  +   
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIF-GKQGIRDAYRTGRGRIKVRAKVHIEKT-KTRD 254

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLL 325
            IV+ E+P+QV K+RL+E+I+EL   K I  + ++RDES  D +R+V+  K  ++  +++
Sbjct: 255 VIVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAM-SEIV 313

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  S MET F + +  ++  + P++  L  +L  ++ HR+ V+ RR+ F ++    
Sbjct: 314 LNHLYKSSVMETTFGIILLAIN-NKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKA 372

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDE+IA+IR+       K  ++ RF L+E Q  AIL +RL+ L  L
Sbjct: 373 RAHILEGLKIALDHIDEVIALIRSSQDVEIAKNALMERFGLSELQSKAILEMRLQRLTGL 432

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E  +LL E E + S+L S ++    I+ E+ E+KE FS         +  C +
Sbjct: 433 ERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNELLEIKEKFS---------SPRCTI 483

Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKI 553
              D  ++  + +I  EP+ V +S+RG+++ ++    +          + +  + D ++ 
Sbjct: 484 IEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQS 543

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              A+T D IL ++  G     K Y +P AG    G+     IQL  D      I T+  
Sbjct: 544 FFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMATITTSDF 603

Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD--HVA 662
           +D   K LV  +K    IV+ + +   +N R  G   + + +++++     +T D   + 
Sbjct: 604 HDD--KSLVFFTKNG--IVKRTNLSEYSNIRSIGVRAINLDADDELVTASIITQDVKELF 659

Query: 663 VVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           V       + F I+ + E+ R       +R ++ +D  I          G T I      
Sbjct: 660 VATYQGMCIRFDINDVREIGRAARGVTAIRFKAKEDSVI----------GATTI------ 703

Query: 719 YNRSENDLL-----GWLGK-----------RGGVGSLVPKGFPRSGKFLS 752
             RSEND L       +GK           RGG G +V K   ++GK +S
Sbjct: 704 --RSENDKLLTVSEQGIGKQTLAGAYRLQSRGGKGVIVMKLTAKTGKLVS 751


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/641 (37%), Positives = 389/641 (60%), Gaps = 39/641 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  SEPVV P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGGII    + + E+++ GRG   +RA
Sbjct: 185 NLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+G G   +VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   V++
Sbjct: 244 KSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  GR P+++ L  ++  ++ HR +V+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGR-PEMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E D +L   E ++ +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVILARKERRMQVIKDELLEVKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+  SL  +       V     
Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLSEYKTQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
           + +  D L+          +L  + +GK      Y +P G+  S    G AIQ LI+++ 
Sbjct: 534 NTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSKAS---KGRAIQNLINIDP 590

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +D V AF+     K        +   V +  +I  T+KG+
Sbjct: 591 -EDKVNAFICTQDLK--------DEKYVNDHFVIMATKKGQ 622


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/694 (37%), Positives = 417/694 (60%), Gaps = 33/694 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
               R+T+   V++ ++  L+  +++ E + V +++ G+I+ +        K     +  
Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++  +GR   G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656
            +  V         K +V+ +K    I++++ I    + K    + ++ EE  +L+ VK+
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651

Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
           T G+   ++G  R   I F+   I  M R  KGV
Sbjct: 652 TNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/609 (39%), Positives = 372/609 (61%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I+IE L+++I  PDFPTGGII    + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIY-GYDGVKEAFETGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CIVVTEIPYQV K+ +I+K  +LI  K+I  +  IRDES      +++
Sbjct: 244 KATFEEV-QGRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  S +++ F +N N+  +G  P+++ L  ++  ++ HR +V+ R
Sbjct: 303 VLKRDAIPNIVLNMLYKYSALQSSFSVN-NIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS + ++  + R  IL+GL+IA  NIDE+IAIIR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKRFELSEVQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + +LA  E +  +L   +++   I  E+REV++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDILAREERRMEIIKDELREVRDKYGDD-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I        ++     V   A 
Sbjct: 480 ---RRS---EINYAGGDLSIEDMIPDEQVVITISHAGYIKRTPLTEYKTQHRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  G+ Y L     P G+  S    G AIQ LI++  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSRTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DKVKAFI 598


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/609 (38%), Positives = 370/609 (60%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGGII    + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIY-GYDGVKEAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES      V++
Sbjct: 244 KAVIEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  GR PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGR-PQMLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++     +  +L+  +++   I  E+ EVK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDILDRKERRMQIIKDELLEVKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I        ++     V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPNEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      Y +P G+  S    G AIQ LI++  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSRTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DKVKAFI 598


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 19  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 79  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 139 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 199 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 258 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 316

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 317 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 375

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 376 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 435

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 436 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 487

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 488 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 547

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 548 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 607

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 608 DLESEDNFLVFATK 621


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/605 (41%), Positives = 358/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  NID II +IR    P     S               
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+  +K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANSADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRLY 600


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 381/605 (62%), Gaps = 32/605 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++ +V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM  +G+   +A+ K
Sbjct: 10  QDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLGVGSRSAYMK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VYD+LVR+AQ F  RYP++ GQGNFG+IDGDSAAA RYTEA
Sbjct: 70  SARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDSAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT + E +L+ +D+D VDF   Y++ + EP V PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 130 RMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAVGMATNIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  L L++N E ++E+++E+I GPDFPTGGII   ++ I+E+YR GRG  ++RA
Sbjct: 190 SLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVKLRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES +D +R+V+
Sbjct: 249 KTHIEK-KPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDESDKDGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  D+++ ++F  + ME+ F + M  ++  + P+V  L  +LK +L HR+ V+ 
Sbjct: 308 ELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLKLFLNHRKTVII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  NIDE+I +IRN       +  ++S+F+L+E Q +A
Sbjct: 366 RRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSKFNLSELQANA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  ++++EL  L+AE  ++D +L S     N I  E+ E+K  F    
Sbjct: 426 ILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLENLIKEELLEIKNKF---- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------A 542
               +     E+         + +I  E + V I++RG+I+ + S   +          A
Sbjct: 482 ----KVPRVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 537

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +   + D ++    ++T D ++ ++  G     K Y +P G   S    G+A+  LI L 
Sbjct: 538 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLIQLQ 594

Query: 598 HNQDI 602
            ++ I
Sbjct: 595 PDEKI 599


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 412/735 (56%), Gaps = 77/735 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  NID II +IR    P     S               
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+   K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAFKTQYSDE-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G 
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHIFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679
              V+++ +   +R     + V+  E  +L+ V +T   D   +     K++ FS   + 
Sbjct: 655 ---VKKTALTEFSRHVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVR 711

Query: 680 EMSRG----KGVRLQ 690
            M R     +G+ LQ
Sbjct: 712 SMGRTATGVRGINLQ 726


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+
Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419
            +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ 
Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+
Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVKE FS       +R T  E+    +    + +I  EP+ V +S +G+++      VD
Sbjct: 475 LEVKEQFSS------QRCT--EIQEVYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521

Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581
           L A   +             E D ++    A+T D +L ++  G     K Y +P  + +
Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    G+AI  LI L  ++ I+   
Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/704 (36%), Positives = 400/704 (56%), Gaps = 48/704 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+       F K
Sbjct: 13  EDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELNNYHNRPFLK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD  AA RYTEA
Sbjct: 73  SARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++GIAVGMAT+IP H
Sbjct: 133 RMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  + +I++P I++  L+E I GPDFPTGG I   R  I E+Y  GRG   +R+
Sbjct: 193 NLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFIC-GRAGIREAYETGRGSLLIRS 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + RDES    +RIV+
Sbjct: 252 RHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDESDRHGMRIVI 311

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGRVPQVMPLDGILKEWLAHRREVL 372
             K   +  ++++  ++ ++ ++  F + M ++++M   P+V+ L  IL+ ++ HR+ V+
Sbjct: 312 ELKKDEI-AEVVINQLYKMTPLQKSFGIIMLSIVNMR--PEVLNLRQILENFILHRKTVV 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
           +RR+++ ++  + +  +L+GL IA  N+DE++A+I+    P+     +++RF L+  Q  
Sbjct: 369 YRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQAQ 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E   ++E +   
Sbjct: 429 AILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDD 488

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT   E+  A    L + MI +E + V +++ G+I   K + VD      + G 
Sbjct: 489 -----RRT---EIIDAPDEILPEDMIAREEMVVTVTHAGYI---KRNPVDTYRSQRRGGK 537

Query: 550 SLKIALH-----------AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593
            +K A             A T D +L  S  G     K Y +P    L+    G+A+  L
Sbjct: 538 GIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLA---RGKAVVNL 594

Query: 594 IDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++L   + +      DS          +L+ + KG       SE     ++GK  L +  
Sbjct: 595 LELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIRE 654

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688
           ++++      TGD+  ++   R + + F    I  M RG  GVR
Sbjct: 655 DDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAMGRGASGVR 698


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/694 (37%), Positives = 416/694 (59%), Gaps = 33/694 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+   E   K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
               R+T+   V++ ++  L+  +++ E + V +++ G+I+ +        K     +  
Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++  +GR   G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656
            +  V         K +V+ +K    I++++ I    + K    + ++ EE  +L+ VK+
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651

Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
           T G+   ++G  R   I F    I  M R  KGV
Sbjct: 652 TNGEREIIIGTARGYAIRFDEKDIRPMGRVAKGV 685


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/572 (38%), Positives = 360/572 (62%), Gaps = 23/572 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KKS
Sbjct: 3   NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNPE++   L+EYI GPDFPTGGII + ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGII-DGQKGIRDAYMTGRGKVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE   G   I++ EIPYQ+ KS LIE+IA+L+  KR+  + D+RDES    +R+V+ 
Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  ++++  F + M  L +   P+V+ L  IL E++ HR EV+ R
Sbjct: 302 VK-KGEEPELILNKLYKYTELQNTFGIIMLAL-VNNAPRVLNLKEILHEYIKHRFEVVTR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R  IL+G  IA  NID II IIR     ++ + +++ +++ ++ Q  AI
Sbjct: 360 RTKFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I +E + +     ++  +L+   + +  I  E+  +KE ++ +  
Sbjct: 420 LDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDN-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543
               R T  E  R +   L + +I+ E + + ++N+G+++ +        K     +++ 
Sbjct: 478 ----RRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQ 531

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  E D ++    A   D +++ +  G+ + +
Sbjct: 532 NTIEDDFVESIESASNLDTLMIFTNQGRVFNI 563


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 380/610 (62%), Gaps = 34/610 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541
               RRT   E+  + ++   + +I  EP+ V +S +G+++   LK +          LS
Sbjct: 485 ----RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
              + E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  LI L
Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVNLISL 593

Query: 597 NHNQDIVTAF 606
             ++ I+   
Sbjct: 594 APDEKIMATL 603


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/637 (40%), Positives = 372/637 (58%), Gaps = 62/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +I++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++T F +NM  L  G+ P++MPL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  NID II +IR    P     S               
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAE 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +LNS ++    I  E+  +K  +S       RRT       A+ A +  + +I 
Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
            G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/619 (39%), Positives = 373/619 (60%), Gaps = 28/619 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G      FKKSAR V
Sbjct: 12  VDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDKPFKKSARTV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTEAR++ +
Sbjct: 72  GDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARLSPL 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+IP HN++E 
Sbjct: 132 AMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNLREA 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P+     L++ I GPDFPTGGIIV  RE I ++Y  GRG   +RA   +E
Sbjct: 192 IDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGIITIRAHAQIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+      V+    R 
Sbjct: 251 TSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELARG 310

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P++++  ++  + M+  + + +  L  G+ P+V+ L  +L+ +L H+++V+ RR+   
Sbjct: 311 ANPNVILNQLYKFTPMQVSYGIILLALVDGQ-PRVLTLKQLLRHYLDHQKDVILRRTRHD 369

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  +ID +I +IR     D+ +  ++  FSLTE Q  AIL++RL
Sbjct: 370 LEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQAQAILDMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F        RR
Sbjct: 430 QRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFGDD-----RR 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548
           T    VS A    ++  +I +E + + +++RG+I        RS +     ++ +  +E 
Sbjct: 485 TKI--VSGAADFEVED-LIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRGVTGIQTREE 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606
           D +     A T + +L  +  GK Y      +  +GR   G A+  LI++  ++  VTA 
Sbjct: 542 DFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIERDEQ-VTAV 600

Query: 607 V----YDSTCKLLVVSSKG 621
           +    +     LL+ + +G
Sbjct: 601 IPVRDFGEDRDLLMCTRRG 619


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/614 (38%), Positives = 372/614 (60%), Gaps = 33/614 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + VK V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  G+  
Sbjct: 12  VADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVTSGSGH 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KS+ IVG+ +G  HPHGD  +YD+LVR+AQ F  RYPL+ GQGNFG++DGD AAA RYT
Sbjct: 72  RKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM  +AE +L  +++D V F+  Y++  +EP V PS FPNLL NG+SGIAVGM+T++P
Sbjct: 132 EARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGMSTNVP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + LID P+ ++  L+EY+ GPDFPT   IV  R  + ++Y+ GRG  R+
Sbjct: 192 PHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIV-GRADVKQAYQTGRGRVRM 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           RA + VE  GR    IV+TE+PYQ  KS L+E+IA+ +   ++  + D+RDES  + VRI
Sbjct: 251 RAEYHVESNGR-RDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDRNGVRI 309

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K ++ + D++ E+  + S +E  F + +N+  +   P+V+ L  +L E+++HR+EV
Sbjct: 310 VIDLKQKA-NTDVV-ENRLLESHLEKTFSV-INLALVDGEPKVLTLKELLAEYVSHRKEV 366

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS   +   + R  IL G L A  N DE++ +I+   + D  K  + S F  +++Q 
Sbjct: 367 VRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETLKSAFDFSQDQA 426

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D I+ ++L SL  +E   I+SE +++ A  E+++ +L S ++  + I  E+RE+K  ++ 
Sbjct: 427 DHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQELLDVIKDELREIKTQYAD 486

Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH--- 544
                 RRT+F E    D  T+  + +I +E   VV+S   +I+ + + + D  A H   
Sbjct: 487 -----ERRTSFIE----DTGTVADEDLIPEEDTVVVLSEGDYIKRVPAETFD--AQHRGG 535

Query: 545 -------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
                   K+GD +     A T D +L  +  G+ Y L    +  +S    G +   ++D
Sbjct: 536 KGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARGTSAVNILD 595

Query: 596 LNHNQDIVTAFVYD 609
           L+  ++I      D
Sbjct: 596 LDDGEEISAVVTAD 609


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 269/725 (37%), Positives = 405/725 (55%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDE+I +I+N   P   K  +VSR            
Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ +  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626
           K Y L    L   +    G+ I  ++ L   + I      D  S  K + +++       
Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                 AN R  G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R 
Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 274/725 (37%), Positives = 408/725 (56%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 SAGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 KELMHILASTERLMEVIREELETVRDAFGDV-----RRT---EITAASHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626
           K Y L    L L+ R   G+ I  ++ L   + I      D  S  K + +++       
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDKFIFMATGDGTVKK 656

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683
                 AN R  G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R 
Sbjct: 657 TPLTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 269/725 (37%), Positives = 405/725 (55%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDE+I +I+N   P   K  +VSR            
Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ +  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626
           K Y L    L   +    G+ I  ++ L   + I      D  S  K + +++       
Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                 AN R  G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R 
Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/551 (40%), Positives = 354/551 (64%), Gaps = 22/551 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+++G+    A+KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM++++  +++ + ++ +D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP+V P++FPNLL NGT+GIAVGMAT+IP H + E+ +  LAL  NP+I+I
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G+I+  R  I  +Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 AELMECIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + 
Sbjct: 240 YQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +NM  L  G  PQV+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++DE+I +IR+    D  +  ++ RF L+E Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDEVITLIRSSKTADIARQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+    ++ ++L   ++    I  E+ EVKE F+      +RRT   E++     +++
Sbjct: 419 QDLMKLIAELKAILADEEKVLEIIREELTEVKERFND-----KRRT---EITIGGMESIE 470

Query: 512 -QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDR 562
            + +I ++ I + +++ G+I+ L + +          +  +   + D ++  L   T D 
Sbjct: 471 DEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEQLLTTSTHDH 530

Query: 563 ILLLSTDGKAY 573
           IL  +  GK Y
Sbjct: 531 ILFFTNKGKVY 541


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/614 (39%), Positives = 375/614 (61%), Gaps = 30/614 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G   
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGRR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  D  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606

Query: 608 -YDSTCKLLVVSSK 620
             +S    LV ++K
Sbjct: 607 DLESEDNFLVFATK 620


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 264/691 (38%), Positives = 392/691 (56%), Gaps = 77/691 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++ +I+I++L+EYI GPDFPT  +I   R+ IV++Y+ GRG   +RA+ 
Sbjct: 188 GEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + + ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+  VKE F+       RRT   E++ A      + +I +E
Sbjct: 485 AELMYILSSSERLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDMEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      +A   KE D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615
                K Y LP   L S    G+ I  ++ L  N+ I             FV+ +T    
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGT 653

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKV 644
           V  +    F    S   I  N R+G + + V
Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 250/629 (39%), Positives = 371/629 (58%), Gaps = 40/629 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  +KK
Sbjct: 4   EKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V P+  PNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +ALI+NPEI I  L++++  PDFPTGGII    E + ++Y  GRG   +RA
Sbjct: 184 NMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  E +R+V
Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R     +++ +++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++
Sbjct: 303 IELK-RDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429
            RR+ + + A ++R  IL+GL I   N+DE+I+ IR   D P  +  ++ RF LTE Q  
Sbjct: 361 LRRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDRFGLTEAQSK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  +E  +I  E    LA  E++ S+L S  +Q   I  E+ +V +++   
Sbjct: 421 AILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESPAKQMEIIKAELLKVSDVY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLS 541
              G  R T       D +   + MI +E + + I++ G+I+        + H     ++
Sbjct: 478 ---GDERRTELRPQEGDFSI--EDMIAQEDVVITITHEGFIKRFPVSGYRRQHRGGRGVA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HG 587
               K  D ++    A T + IL  +T G     K Y +P AG    GR          G
Sbjct: 533 GAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAARGRSLANIMELPPG 592

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           E I+  I++ +  D    F+  +T K +V
Sbjct: 593 EKIRTYINVRNFDD--PHFIIMATAKGIV 619


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 262/698 (37%), Positives = 405/698 (58%), Gaps = 37/698 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI+H M+EMGL     ++
Sbjct: 4   DERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD+AAA RYTE
Sbjct: 64  KSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T++AE +L  ++++ VDF   Y+E   EP+V PS+ PNLL NG  GIAVG AT+IP+
Sbjct: 124 ARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  L L++NPE++I +L++ I GPDFPT G I  +   I ++Y  GRG   VR
Sbjct: 184 HNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGT-SGIKDAYETGRGLLTVR 242

Query: 254 ARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           A+  +E   R     +++TEIPYQV KS+LIEKIA+L    R+  + DIRDES  E VR+
Sbjct: 243 AKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRV 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K   + P +++ +++  S ++T F +NM  L   R P+V+ L  IL+ ++ HRREV
Sbjct: 303 VIELKRNEI-PLVVLNNLYKHSQLQTTFGVNMLALVNNR-PEVLNLKRILEAFVEHRREV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+++ ++  + R  IL+GL IA  N+D +IA+IR    P   +  ++ +F L+E Q 
Sbjct: 361 VVRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQFRLSEIQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL +RL+ L +LE  ++  E   +L   E + S+L S       I  E+ E+KE +  
Sbjct: 421 NAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSEALVRKIIRDELTEIKEKYQD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541
                 RRT    V    + TL+  +I +E + V IS+ G+I   K ++V L        
Sbjct: 481 E-----RRTKI--VKEEAELTLED-LIAEEEVVVTISHAGYI---KRNAVTLYRAQRRGG 529

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
               A+  KE D ++    A T D +L  +  GK Y L    +   S    G+A+  L+ 
Sbjct: 530 KGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAKGKALVNLLA 589

Query: 596 LNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKL 652
           L+ ++ +            + +++ +K       E    +N R+G    L + + +K+  
Sbjct: 590 LSKDEKVTATLPVKEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIG 649

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
           V    G    ++G  + + I F  + +  M R   GVR
Sbjct: 650 VDLTDGQREILLGTKQGITIRFKEEDVRAMGRTAHGVR 687


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/683 (37%), Positives = 408/683 (59%), Gaps = 32/683 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+++GL    +++KSA +VG+V+GK
Sbjct: 21  MRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLGLVPEKSYRKSATVVGDVLGK 80

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++V+LAQ F  RYPL++G GNFG+IDGDSAAA RYTEA+M ++   +L+
Sbjct: 81  YHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDSAAAMRYTEAKMQKLTLELLK 140

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+++PNLL NG++GIAVGMATSIP HN++E+ +A + 
Sbjct: 141 DIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLREVIDAVVE 200

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDN E ++E ++++I GPDFPTG  I+  + SI ++Y  GRG   VR++  +EE+  G 
Sbjct: 201 LIDNEEATVEDMMKHIKGPDFPTGATIM-GKGSIRDAYMTGRGKVTVRSKADIEELPNGK 259

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I+VTEIPYQV K+R+IEKIA+L+  KRI  + D+RDES  D +RIV+  + R ++P++
Sbjct: 260 SQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDESNRDGIRIVIEVR-RDVNPNI 318

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  S ++  F + M  L  G  P+V+ +  +L  +L H++ V+ RR+ + ++   
Sbjct: 319 VLNNLYKHSQLQDVFSIIMLSLVNGE-PKVLNIRDMLVHYLNHQKNVVRRRTEYDLRKAK 377

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL+IA  NID +I IIR  D     K  +   F L++ Q  AIL++RL+ L  
Sbjct: 378 ERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFGLSDIQSQAILDMRLQRLTG 437

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ E   L+      +S+L         I  E+ +++E   K  D  +RRT   E
Sbjct: 438 LERGKIEEEFAELMKNIAYYESILQDQSILLGIIKDEMLKIRE---KHGD--KRRTEITE 492

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
              AD+  +    I  E +TV  ++ G+I+ +   +          ++++  ++ D ++ 
Sbjct: 493 A--ADEINILDT-IPDEEVTVTFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDDFVEK 549

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607
            L       IL L+  G+ Y L A  +  SGR   G  I  LI L  N+  VT+F+    
Sbjct: 550 LLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKGTNIVNLIPLEKNEK-VTSFISIRD 608

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +   L++ + KG     + SE   +TR G   + +  ++++  V    G+   ++   
Sbjct: 609 VPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDELINVKTTDGEQDFIIVTK 668

Query: 668 RKLLI-FSIDQIPEMSRGK-GVR 688
           + + I F   Q+ +M R   GVR
Sbjct: 669 KGMAISFDEKQVRDMGRAAMGVR 691


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KSA
Sbjct: 17  IEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R+
Sbjct: 77  RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA  +L+ +D++ VDF+DTY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 137 TKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R + 
Sbjct: 197 SEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYATGRGSIVMRGKV 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+   
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+ P+VM L  +L+ +++ R EV+ RR+
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLTDMLRAFVSFREEVITRRT 374

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILL 434

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+ + AE      +L+S
Sbjct: 435 IDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSS 494

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I++E + V +S+ 
Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHS 546

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP GN  S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKL 663

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+   D+  V +   + + + FS+  +
Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDV 715


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/637 (39%), Positives = 367/637 (57%), Gaps = 63/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LALI NP++S+E+++EYI GPDFPT GII   +  I ++YR GRG   +RAR 
Sbjct: 188 NEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGII-NGKAGIEQAYRTGRGKVHIRARA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E   RG   IVV E+PYQV K+RLIE+IAE +  K+I  +  +RDES +D   ++   
Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + M+  F +NM  L + + P++  L  +L  +L HRREV+ RR+
Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVAL-IDKQPKIFTLKEMLDAFLRHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------- 420
            F ++    R  IL+ L IA  NIDEIIA+I+      + K  ++SR             
Sbjct: 366 VFELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLER 425

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + LTE Q  AIL+LRL  L  LE  +I SE   LL    
Sbjct: 426 AGDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +LN+  +    I  E++  K+ F      G  R T    S AD     + +IE+E 
Sbjct: 486 ELLYILNTPSRLLEVITEELQASKDAF------GDERRTEISASSADINL--EDLIERED 537

Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ G 
Sbjct: 538 VVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGR 597

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
               K Y LP   L S +  G+ I  L+ L   + I 
Sbjct: 598 LYWMKVYQLP---LASRQARGKPIVNLLPLQDGERIT 631


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/598 (38%), Positives = 368/598 (61%), Gaps = 31/598 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KKSARIVGEV+GK
Sbjct: 16  MKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAHKKSARIVGEVLGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEARM ++A+ +L 
Sbjct: 76  YHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARMRKIADDMLI 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P HN+ E+ +  +A
Sbjct: 136 DIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMPPHNLSEVVDGTIA 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I+NP I I++L+ +I  PDFPTGG+I    E + E++  GRG   VRA+  +EEV +G 
Sbjct: 196 YIENPNIEIDELITHIKAPDFPTGGVIF-GYEGVKEAFHTGRGRVVVRAKAIIEEV-QGK 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++   R   P+++
Sbjct: 254 ECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVYILKRDAIPNIV 313

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + +++ F +N   L  GR PQ + +  ++  ++ HR EV+ RR+ F ++  + 
Sbjct: 314 LNTLYKYTSLQSSFSVNNIALVNGR-PQQLNVKEMIHYFVEHRHEVVVRRTKFELKKAED 372

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+IA  NIDE+I +IR   + D+ +  ++ RF L+E Q  AI+ +RLR L  L
Sbjct: 373 RAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMERFKLSEIQAKAIVEMRLRQLTGL 432

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ ++++E ++++A    +  +L   +++ + I  E++EVK  +  +     RR+   E+
Sbjct: 433 EQDKLRTEYNDIIATIADLKDILGDKERRMSIIKEELQEVKTKYGDA-----RRS---EI 484

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           + A  +   + MI  E + + IS+ G+I        ++     V   A   +  D L+  
Sbjct: 485 NYAGGSLSIEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKASATRNEDFLEHL 544

Query: 555 LHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +L  +  GK      Y +P G+  S    G AIQ LI+++  +D V AF+
Sbjct: 545 FVGTNHQYMLFFTQSGKCFWMRVYEIPEGSRTS---KGRAIQNLINISQ-EDKVKAFI 598


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/572 (39%), Positives = 358/572 (62%), Gaps = 22/572 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 5   KQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 125 ARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L++NPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VR
Sbjct: 185 HNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
            +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RIV
Sbjct: 244 GKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R +   +++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 IDVR-RDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIA+IR   ++D+ K  M+ RFSL++ Q  
Sbjct: 362 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMERFSLSDRQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +LL     +  +L + ++    I  E++E+ + F   
Sbjct: 422 AILDMRLRRLTGLERDKIENEYQSLLELIADLKDILANPQRVLEIIQTELQELGQRFGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT                  E+  IT  ++N G+I        R+ +     + 
Sbjct: 482 -----RRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVANSEFRAQRRGGRGVQ 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +   + D +K  +   T D +L  +  GK Y
Sbjct: 535 GMGIHDEDFVKTLISCSTHDTLLFFTNMGKVY 566


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/572 (39%), Positives = 356/572 (62%), Gaps = 22/572 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 6   KQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 126 ARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR
Sbjct: 186 HNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
            +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RIV
Sbjct: 245 GKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R +   +++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 305 IDVR-RDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIA+IR   ++D+ K  M+ RF L++ Q  
Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     +  +L + ++    I  E++E+ + F   
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT                  E+  IT  ++N G+I        R+ +     + 
Sbjct: 483 -----RRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +   + D +K  +   T D +L  +  GK Y
Sbjct: 536 GMGIHDEDFVKTLISCSTHDTLLFFTNKGKVY 567


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/697 (37%), Positives = 410/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++EV+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  IT  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI +  ++ I
Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + +V  N   ++F+ + +  M R  +GV+  + +DG
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDG 694


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/736 (35%), Positives = 420/736 (57%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI+ PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+  K+    +  E+ E+++ +      G +R +    SR D    
Sbjct: 479 FKELIDRVKYLISILSDIKELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE      KGK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSKGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 354/564 (62%), Gaps = 22/564 (3%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK ARIVGE++GK+HPH
Sbjct: 19  YLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVGEILGKMHPH 78

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR+T +AE +L  +++
Sbjct: 79  GDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARLTPIAEEMLADIEK 138

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDFRD ++ +  EPVV P++ PNLL NG +GIAVGMAT+IP HN+ E+C+A   LIDN
Sbjct: 139 NTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLSEVCDAITHLIDN 198

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+ ++E L++ + GPDFPT G+I+ + E I+ +Y  GRG   +RA+  +EE  RG++ IV
Sbjct: 199 PDATVEDLVKILPGPDFPTAGMILGT-EGIMNAYSTGRGHIIIRAKAHIEEAARGAFHIV 257

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           VTE+PYQV K+RL E+IAEL   ++I  + D+RDES    +R+V+  K  +  P  ++ +
Sbjct: 258 VTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDA-QPKKVLNA 316

Query: 329 IFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           ++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR+ F +     R 
Sbjct: 317 LYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRTEFDLDKARARA 376

Query: 388 EILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL IA  ++D +I  IRN    D  +  +++ F+L+E Q +AIL ++L  L  LE 
Sbjct: 377 HILEGLKIALDHLDAVITTIRNSRSRDNARANLMNGFALSEAQANAILEMQLGRLAALER 436

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   ++    +++ +L + ++  + I  ++ ++K  +  +     RRT    +  
Sbjct: 437 QRIEEEYREVIRLIGELEDILANPRKILHLIKQDLADLKAKYGDA-----RRTRI--IPE 489

Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556
           A+       +I    + + +++RG++        R+ +     +     +E D ++  L 
Sbjct: 490 ANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVYRTQRRGGRGIRGATTREQDVVRHILA 549

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL 580
           A+T D +L  +  GK Y + A  L
Sbjct: 550 ANTMDDLLFFTDRGKVYQIKAHEL 573


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/559 (40%), Positives = 356/559 (63%), Gaps = 20/559 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM++++  +++
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D++D Y+ ++ EP V P++FPNLL NG SGIAVGMAT+IP H + EI +  LA
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  N +I+I +L+E+I GPDFPT G+IV  R  I  +Y  G+G   +RA+  +E+   G 
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIV-GRSGIRRAYETGKGSIMMRAKVEIEQKSNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + +++
Sbjct: 240 ETIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L   L  +L H++ V+ RR+ + ++  + 
Sbjct: 300 LNNLYKQTALQTSFGINMLALVDGQ-PKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR     D  K  ++++F+L+E Q  AIL++RL+ L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQFNLSEKQAQAILDMRLQRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E  NL A   ++  +L   ++    I  E+ E+K+ F+       RRT    V
Sbjct: 419 EREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFNDV-----RRTEI--V 471

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +   +    + +I +E I + +++ G+I        RS K     +  +   + D ++  
Sbjct: 472 AGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL 531

Query: 555 LHAHTTDRILLLSTDGKAY 573
           L+  T D IL  +  GKAY
Sbjct: 532 LYTSTHDTILFFTNKGKAY 550


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/574 (41%), Positives = 347/574 (60%), Gaps = 24/574 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL      KK
Sbjct: 4   EKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +A+ID+PEI I  L++Y+  PDFPTGGII    E + ++Y  GRG   +RA
Sbjct: 184 NMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K+I  + DIRDES  E +R+V
Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R   P +++  ++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++
Sbjct: 303 IELK-RDAVPKVVLNHLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429
            RR+ + + A ++R  IL+GL I   N+DE+I  IR   D P  +  ++ RF LTE Q  
Sbjct: 361 LRRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDRFGLTEVQAK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  +E  +I  E    +A  E++ S+L S  +Q   I  E+ +V E++   
Sbjct: 421 AILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASPAKQMEIIKEELLKVSEVY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLS 541
              G  R T       D +   + MI +E + + I++ G+I+        + H     ++
Sbjct: 478 ---GDERRTEMRPQEGDFSI--EDMIAQEDVVITITHDGFIKRFPVSGYRRQHRGGRGVA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
               K  D ++    A T + IL  +T G+ Y L
Sbjct: 533 GAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWL 566


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/593 (41%), Positives = 358/593 (60%), Gaps = 25/593 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIGK
Sbjct: 86  MRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIGK 145

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L+
Sbjct: 146 YHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELLR 205

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +D VD++  Y+E  SEP V P++FPNLL NG+SGIAVGMAT+IP HN+ E  EAA A
Sbjct: 206 DLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAACA 265

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PEI+ ++L++ I GPDFPTG +I+ + E I ++Y  GRG   VRA+  +E    G 
Sbjct: 266 LIDDPEITTDELMQIIPGPDFPTGAVIMGT-EGIHKAYETGRGSITVRAKAHIESTKTGR 324

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +V TEIPYQV K  L EKIA+L+  KR+  + D+RDES  + +R+V+  K + + P +
Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELK-KGVIPQV 383

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F +N   L  G  PQ + L  +L  ++AH+ +V+ RR+ F ++   
Sbjct: 384 VLNNLYKFTSLQSTFGINNLALVEG-APQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKAR 442

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G LIA  +IDE+I+IIR+ +   +    +  RF  T+ Q  AIL ++LR L  
Sbjct: 443 ARAHILEGYLIALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKLRRLTG 502

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I +ELD L    E  + LL   ++    I  E+RE+   F        RRT   E
Sbjct: 503 LERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDP-----RRT---E 554

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
           +  A+K    + +I  E + V I++ G++        RS K     +S ++ KE D +  
Sbjct: 555 IREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAE 614

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
              A T + +L  ST GK Y L    L  G  +  G AI  L+     + I +
Sbjct: 615 MFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIAS 667


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/727 (35%), Positives = 397/727 (54%), Gaps = 71/727 (9%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  + S   V   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+
Sbjct: 2   TDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 62  EMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ ++AE +L  +D++ +DF+D Y+  + EPVV P++FPNLL NG+ G
Sbjct: 122 GDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  +
Sbjct: 182 IAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRSA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +EEV      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+R
Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R    D+++  ++  + ++T F  N+  L+ G+ P+ M L  +L+
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGK-PEQMTLLDMLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            +++ R EV+ RR+ + ++    R  IL GL IA  NIDEIIA+IR    P+   +    
Sbjct: 360 AFVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLME 419

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + ++L+E Q  AIL LRL+ L  L   +I  EL+ 
Sbjct: 420 RRWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKAT 509
           +  +      +L S  +    +  E+  ++E F+       RRT F     E+   D   
Sbjct: 480 IGVDITDYLHILASRLRIMGIVKDELSTLREEFAAP-----RRTIFGFGNIEMDNED--- 531

Query: 510 LQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               +I  E + V +S+ G+I        R+ +      S +  K+ D +     ++T  
Sbjct: 532 ----LIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHT 587

Query: 562 RILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------S 610
            +L  S+ G     K + LP G   + +  G A+  ++ L   + I T           S
Sbjct: 588 PVLFFSSRGIVYKEKVWRLPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEASWS 644

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENR 668
              ++  +++G     + S+ +   R GK  +K+  E    L V+     D V +   N 
Sbjct: 645 KLDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANG 704

Query: 669 KLLIFSI 675
           + + F +
Sbjct: 705 QCIRFPV 711


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 403/711 (56%), Gaps = 38/711 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KK ARIV
Sbjct: 8   ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL  GQGNFG+IDGD+ AA RYTE RM+++
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  +D++ VDFR  Y+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A L +ID+P++ I+ LL  I GPDFPTGG I    + + ++Y  GRG  +VR +  +E
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVG-QGLYDAYTKGRGTVKVRGKVEIE 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G+  IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES  + +R+V+  K +
Sbjct: 247 ERKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELK-K 305

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + P++++ +++  + +ET F +NM  +   R PQ++ +   L  +L HRREV+ RR+ F
Sbjct: 306 GVIPEIIINALYKFTPLETSFGINMLAVVDNR-PQLLTIKSALTYFLDHRREVIVRRTRF 364

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            +   + R+ IL GL+ A  +IDE++ +IR+   P   K  ++ RFSL+E Q  +IL++R
Sbjct: 365 ELNKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIERFSLSEIQAQSILDMR 424

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +++ E+  L  +    +S+L   K  W  I  E+  +KE+++       R
Sbjct: 425 LQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILWGVIRDEVTGIKEMYTTP-----R 479

Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
           RT   EV R     ++ + +I  + + + +S RG+I+          +     ++ LH  
Sbjct: 480 RT---EVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGGKGVAGLHTS 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ---D 601
           E D ++  +       +LL +  G+ + L    +  G     G  I  ++ L   +    
Sbjct: 537 EDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIANIVPLEKEEWVTT 596

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           I+T   +      L  + KG       S    + R G   + +  ++++ +V +VT +  
Sbjct: 597 ILTVREFSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELIMVKEVTNNDF 656

Query: 662 AVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707
            V+       I FS + +  M RG    KG+ L+     G S V C  + E
Sbjct: 657 IVLATAEGFAIRFSCEDVRNMGRGAAGVKGIALRP----GDSVVACLILQE 703


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 275/764 (35%), Positives = 441/764 (57%), Gaps = 46/764 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE  +G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+   E   K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              R+T    V++ ++   +  +++ E + V +++ G+I        +S K     +  +
Sbjct: 481 ---RKTVI--VAKEEELDFED-LVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
             +E D ++      T DR+L  +  GK Y+L   ++  SGR   G AI  LI ++  + 
Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
            VTA +     D    +L+ + KG        E  +  R G   + ++ +E  +L+ VK+
Sbjct: 595 -VTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNG--IIAITLDENDELINVKL 651

Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC----EGL 709
           T G+   ++G  +  +I F+   +  M R  +GV   S ++    +V+   +     E L
Sbjct: 652 TNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVMAISLRED--DEVVEMDLVHPDGEVL 709

Query: 710 TWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           T  +   G+  +  E  + G    R G G +  K   ++GK +S
Sbjct: 710 TVTEKGFGKRTDLEEYRIQG----RAGKGIIAMKLSKKTGKLVS 749


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 269/725 (37%), Positives = 404/725 (55%), Gaps = 64/725 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  +I   R+ IV++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDE+I +I+N   P   K  +VSR            
Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ +        RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDV-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626
           K Y L    L   +    G+ I  ++ L   + I      D  S  K + +++       
Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                 AN R  G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R 
Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716

Query: 684 GKGVR 688
             GVR
Sbjct: 717 AAGVR 721


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/686 (37%), Positives = 402/686 (58%), Gaps = 38/686 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL    A+KKSAR+VGE +GK
Sbjct: 22  IKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNTAYKKSARVVGETMGK 81

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD AAA RYTEAR+ ++ EL+L 
Sbjct: 82  YHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARLYEIGELMLA 141

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VD+   ++E   EP+  P+  PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 142 DIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATNIPPHNLVEVVDALCY 201

Query: 206 LIDN-PE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           LID  PE + I ++L  + GPDFPTGG+I+  R+ I+++YR GRG   +R R  +EE  R
Sbjct: 202 LIDTEPEQVDIGEILFRMPGPDFPTGGLIL-GRDGIIDAYRTGRGKITMRGRTHIEEGKR 260

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDP 322
           G   IV+TEIPY V K+ LIE IA+ +  K I  + D+RDES  E +RIV+   NR  DP
Sbjct: 261 GKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREGLRIVI-EVNRDTDP 319

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           +L++  ++  + +++ F + +N+  +   P+ + ++ +L  +L HRR V+ RR+ FR++ 
Sbjct: 320 NLVLRQLYRRTQLQSTFGV-INLALIDGYPKELSIEEMLNIFLNHRRSVVRRRTQFRLEK 378

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            + R  I++GL+ A   IDE+IA+IR     ++ K  ++S+   +E Q  AIL +RL+ L
Sbjct: 379 AEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISKLDFSEAQAQAILEMRLQRL 438

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  ++++EL  LL++ E+  ++L + K   + I  E+ EVK  F      G  R T 
Sbjct: 439 TGLEREKLEAELAQLLSDIERYQTILGNPKVLDSVIKEELLEVKRRF------GNERKT- 491

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH------FKEGDSL 551
            E+  A +    + +I +  I VV+S  G++R   L+ +++             +E D +
Sbjct: 492 -EIIDAVEDVSIEDLIPESDIVVVLSRDGYLRRKDLQEYTLQGRGGKGRKGTALQEEDEV 550

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            +     T   I L ++ G     K Y +P     S  G G+ I   + L   + +VT  
Sbjct: 551 ALVAVTSTHRDIYLFTSKGRVLALKGYVIPE----SKTGRGKLINRFVALEEGERVVTMH 606

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAV 663
               D       ++ +G A  ++ SE+   TR G+  + +   +++  +V  +G DH+ +
Sbjct: 607 GRAVDGAKYAFFITLRGTAKRLDLSELENLTRAGRRVMGLDEGDEISQIVLTSGDDHLLI 666

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVR 688
           V    + L     +   M R  +GVR
Sbjct: 667 VTAQGQALRTHESEFRPMGRTARGVR 692


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/624 (39%), Positives = 378/624 (60%), Gaps = 34/624 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM ++G     ++KKSAR+
Sbjct: 4   TISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 64  VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMAR 123

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +    L  +++  VDFR  Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E
Sbjct: 124 LCSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSE 183

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  + L+DNP  ++E ++ ++ GPDFPTGG++    + + ++Y  GRG  ++R    +
Sbjct: 184 LIDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGG-QGLYDAYTTGRGSIKIRGVVEI 242

Query: 259 EEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           EE GRG    IV+ EIPY + KS L+EKIA L+  K+I  + D+RDES    +RIVL  K
Sbjct: 243 EETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLK 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++ +++  + +ET F +NM  + +G+ P ++ L  +L  +L HRREV+ RR+
Sbjct: 303 -RGAIADIIINALYKYTPLETSFGINMMAV-VGKRPMLLNLKSVLDYFLDHRREVVIRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F +   ++RV IL+GL IA  NIDE++ +IR   + D+ K  +++RFSL+E Q  AIL+
Sbjct: 361 KFDLDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMARFSLSEIQAKAILD 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  EL  LL + E   S+LN+     + I  E++E+KE +S      
Sbjct: 421 MRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVLKSVIRDELKEIKENYSTP---- 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545
            RR+     +  D   ++  +I  E   V +S RG+I+   L +++        +S +  
Sbjct: 477 -RRSELL-TANPDAIDIED-LIPDEETVVTLSQRGYIKRTPLSNYTAQRRGGKGISGVQT 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
            +GD +   +       ++L +  G     KA+ +P G+  +  GH   +  L+ L+ ++
Sbjct: 534 GDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGGH---VANLLPLDKDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKG 621
            I TA     +D     L ++ KG
Sbjct: 591 CITTALSLREFDDDRFFLFLTKKG 614


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/646 (38%), Positives = 374/646 (57%), Gaps = 55/646 (8%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++S     +  +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI+GQGNFG+
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE R+ +VA   L  +D+D V+F + Y+  + EP V P+++PNLL NG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +A+I+ PEI++ +L+E I GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIIL-GRAGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R++   EE+  G   I+V+EIPYQV KS +IEKIAEL+  KRI  + D
Sbjct: 240 AAYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISD 299

Query: 301 IRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDES  + +R+V+  K  ++ PD+++  ++  S ++  F  NM  L+ GR P+ + L  
Sbjct: 300 IRDESDRQGMRVVIELKKDAV-PDVIVNQLYRYSQLQQSFGCNMVALNGGR-PEQLALKD 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +LK ++A R EV+ RR+ F +     R  +L GL +A  NID++I +IR    P P    
Sbjct: 358 MLKAFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRT--APDPATAR 415

Query: 420 R-------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIK 448
           R                               F L+E+Q  AIL+LRL+ L  L   +I 
Sbjct: 416 RQLMERNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIG 475

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            ELD L AE +    +L S ++    +  E+ EV++ F+       RRT   E++     
Sbjct: 476 DELDKLAAEIKDYLDILKSRERILEIVRTELEEVRDEFATP-----RRT---EITDGGGD 527

Query: 509 TLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I++E + V +S+ G+I        R+ +      S +  K+ D +     A+T 
Sbjct: 528 LDDEDLIQREDMVVTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTH 587

Query: 561 DRILLLSTDGKAYTLPAGNL-LSG-RGHGEAIQLLIDLNHNQDIVT 604
             +L  S+ G AY +    L L+G +  G A+  ++ L   + I +
Sbjct: 588 TPVLFFSSRGIAYKMKVWRLPLAGPQARGNALVNMLPLEQGERITS 633


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/611 (39%), Positives = 366/611 (59%), Gaps = 51/611 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 26  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  +L GL +A  N+DE++A IR+                            D
Sbjct: 383 DLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPAAEIESYLRLID 442

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL+LRL+ L ++   ++  EL++L A+ ++   +L+S +
Sbjct: 443 DPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKEYLDILSSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+REVKE F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RIMGIIADELREVKENFAVP-----RRTQIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 581 LSGR-GHGEAI 590
            SGR G G+AI
Sbjct: 615 QSGRTGKGKAI 625


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/761 (34%), Positives = 435/761 (57%), Gaps = 39/761 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L ++D P  ++E L++++ GPDFPT G +    + + ++Y  GRG  +VR +  
Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAG-QGLYDAYTTGRGTVKVRGKVE 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           +EE  +G   IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES  + +R+V+  K
Sbjct: 242 IEERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLK 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   PD+++ +++  + +E+ F +NM +  +G  PQ++ L   L+ +L HRREV+ RR+
Sbjct: 302 -RGTIPDIVVNALYKYTPLESSFGINM-LAVVGNRPQLLNLKQALEIFLEHRREVIIRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF+L+E Q  AIL+
Sbjct: 360 RYDLRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGRFTLSEAQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E + LL + E   S+L + +   + I  EI E+++ F+      
Sbjct: 420 MRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRSVIREEIGELRDTFAT----- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545
           +RRT   E    D   ++  +I  E + + +S RG+I+  +L ++         ++ +H 
Sbjct: 475 KRRTEVLE-EELDGIDIED-LIPDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHT 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ--- 600
            E D ++  L       +LL +  G+ + +    +  G    + + +  L+ L+ ++   
Sbjct: 533 SEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVT 592

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRK-GKTFLKVSSEEKMKLVVKVT 657
           +++T   +      L V+ +G   +V+ S   + A  RK G   + +  ++++ +V +V 
Sbjct: 593 NVLTVREFAEDRYFLFVTRRG---MVKRSSASLYAKCRKTGLIAVGLRPDDELIMVREVD 649

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI 712
              H+ +   +   + F  + +  M R     KG+ L+  KD  ++ VI  +       +
Sbjct: 650 EHCHIVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRG-KDRVVACVILAEEDTTSMIM 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +     L  +  RGGVG    K  P++G  + +
Sbjct: 709 SVSANGFGKRTKADLYRVQSRGGVGVKNFKVTPKTGDVIGA 749


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/610 (39%), Positives = 379/610 (62%), Gaps = 34/610 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 KMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 KIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541
               RRT   E+  + +    + +I  EP+ V +S +G+++   LK +          LS
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
              + E D ++    A+T D +L ++  G     K Y +P  + ++    G+A+  LI L
Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVNLISL 593

Query: 597 NHNQDIVTAF 606
             ++ I+   
Sbjct: 594 APDEKIMATL 603


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 396/712 (55%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KSA
Sbjct: 17  IEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R+
Sbjct: 77  RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA  +L+ +D+D VDF++TY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 137 TKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R + 
Sbjct: 197 GEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKV 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+   
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+ P+++ L  +LK +++ R EV+ RR+
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PELLTLTDMLKAFVSFREEVITRRT 374

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILL 434

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+++ AE      +L+S
Sbjct: 435 IDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSS 494

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I++E + V +S+ 
Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHS 546

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP GN  S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKL 663

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+   D+  V +   + + + FS+  +
Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDV 715


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 263/691 (38%), Positives = 398/691 (57%), Gaps = 30/691 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  ++L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+AM  +G+    A KK A
Sbjct: 6   VVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+ K HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 66  HIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEARM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  ++++ VDF   Y+E   EP V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 TKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  + L+DNPE     L++ + GPDFPT G I+   + I+ +Y  GRG  ++RA+ 
Sbjct: 186 AEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIM-GVQGIISAYTTGRGSIKIRAQA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            +EE+  G   IVV EIPYQV K+RLIEKIAEL+  K+I  + D+RDES  + +RIV+  
Sbjct: 245 EIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIEL 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P L++  ++  + M+  F + M  L  GR P V+ L  +L  +L H+++++ RR
Sbjct: 305 K-RDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGR-PNVLNLRDMLYYYLEHQKDIIIRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  I++GL IA  N+DE+I  IR+       K  +V +F LTE Q  AIL
Sbjct: 363 TTFDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEKFLLTEIQAQAIL 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +++ E  +L+ +   ++++L+   +    I  E+ E+++ ++     
Sbjct: 423 EMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYAD---- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            +RRT    +S  D A   + +I +E + + I+  G+I        RS K     +SA+ 
Sbjct: 479 -KRRTV---ISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLDTYRSQKRGGRGISAMG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
            KE D LK      T   IL  +  GK Y L    +  +GR   G AI  L+ +   + +
Sbjct: 535 VKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKGTAIINLLFVGTEEKV 594

Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            T        K   L + +  G       +E   + R G   L +   + +  V    G 
Sbjct: 595 TTVIPVKEFNKDEFLFMCTKNGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRLTNGQ 654

Query: 660 HVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
              ++G  + L I FS D + ++ R  KGVR
Sbjct: 655 EEIIIGTQKGLAIRFSEDDVRKLGRIAKGVR 685


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/656 (37%), Positives = 391/656 (59%), Gaps = 36/656 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  + ++ +  V++   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++AM  +G
Sbjct: 1   MSDTKDVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++K A  VGEV+GK HPHGD +VYDSLVR+AQ F  RY  I G GNFG+IDGD 
Sbjct: 61  FTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+++++  +L+ +++D VDF+  ++E   EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  + +ID+P +++++L++ I GPDFPT GIIV  ++ I ++Y  
Sbjct: 181 GMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIV-GKQGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E++      IVVTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 240 GKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGI 360
            +D +RIV+  K +  + ++++  ++  + M+  F +NM  L +       P+V+ L   
Sbjct: 300 DKDGMRIVIELK-KDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQA 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVM 417
           +  ++ H+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I II   RNE   K  +
Sbjct: 359 IDYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEAL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF  +E Q  AI+++RL  L  LE  +I +E   LL E +    +L +     + I  
Sbjct: 419 IQRFGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKK 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +        RRT    +   D+  ++  +IE E   V +++ G+I+ L + +
Sbjct: 479 ELEEIKQKYGDE-----RRTKI--IPDEDEIEIED-LIEVEENVVTLTHFGYIKRLPTST 530

Query: 538 VD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHG 587
                     +  L  +E D ++      T D IL  +  GK Y L    +  +GR   G
Sbjct: 531 YKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKG 590

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638
            AI  L+ L+ N+ I T      Y     L + +  G   IV++++++   N RKG
Sbjct: 591 TAIVNLLQLDQNEKITTVIPISEYKEGLYLFMATKHG---IVKKTDLMEFDNIRKG 643


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/624 (39%), Positives = 381/624 (61%), Gaps = 29/624 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE  +G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+   E   K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              R+T    V++ ++   +  +++ E + V +++ G+I        +S K     +  +
Sbjct: 481 ---RKTVI--VAKEEELDFED-LVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
             +E D ++      T DR+L  +  GK Y+L   ++  SGR   G AI  LI ++  + 
Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594

Query: 602 IVTAFV----YDSTCKLLVVSSKG 621
            VTA +     D    +L+ + KG
Sbjct: 595 -VTAVIPLKKSDDIKYVLMCTKKG 617


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 282/762 (37%), Positives = 422/762 (55%), Gaps = 99/762 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN++EI
Sbjct: 131 AHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHNMREI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALID+  +SI+ L+ YI GPDFPTGGII   R  I+E+YR GRG   VRAR  +E
Sbjct: 191 IDGCLALIDDYTLSIDDLMAYIPGPDFPTGGII-NGRAGILEAYRTGRGRIYVRARHTIE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              + G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES  E +R+V+  K 
Sbjct: 250 HDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIEVK- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    D+++ ++F  + ++T F +NM  L  G+ P+++ L  IL+ ++ HRREV+ RR+ 
Sbjct: 309 RGESGDVVVNNLFAHTQLQTVFGINMVALDNGQ-PKILNLKEILEAFVRHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE+I +I+   +  + K  +V+R              
Sbjct: 368 FELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDMLERA 427

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL LRL  L  LE  ++  E  ++L   
Sbjct: 428 GATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSILKRI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +++ +L S ++  + I  E++ +++ +      G  R T  + S  D     + +I +E
Sbjct: 488 AELNEILASPERLLDVIREELQAIRDQY------GDERKTEIQASHLDLTI--EDLINEE 539

Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS  G+ ++  L  +          SA   K+ D ++  L A T D +LL S  G
Sbjct: 540 DMVVTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRG 599

Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           K Y L               P  NLL     GEAI  ++ +   ++   ++++ +T K  
Sbjct: 600 KVYWLKVYEMPNASRGSRGKPLINLLP-LDEGEAINAILPVREYRE--DSYIFFATAKGT 656

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLI 672
           V  +    F         +  +    + +  EE  +LV   +    DH  ++  N K + 
Sbjct: 657 VKRTSLEQF---------SRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIR 707

Query: 673 FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLT 710
           F    +  M R     +G+RLQ     G ++VI   I + LT
Sbjct: 708 FEEGNVRAMGRTARGVRGMRLQ-----GGAEVISLIIPQSLT 744


>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/683 (38%), Positives = 385/683 (56%), Gaps = 73/683 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E G ++   ++KS
Sbjct: 16  DIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DGD AAA RYTE R
Sbjct: 76  ARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D+D VDF+D Y+  +SEPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+A+++NP +++ +LLE I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 196 LGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIIL-GRSGIRSAYETGRGSVVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             VEE+  G   ++V+EIPYQV K+ +IEKIAEL+  KRI  + DIRDES    +R+V+ 
Sbjct: 255 VEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDIRDESDRLGMRVVIE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  S ++T F  NM  L+ GR P+ M L  +LK ++A R EV+ R
Sbjct: 315 LKKDAV-ADVILNQLYRFSALQTSFGCNMVALNGGR-PEQMLLSDMLKAFIAFREEVIGR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417
           R+ F +     R  +L GL IA  NIDE+I +IR    P            P M      
Sbjct: 373 RTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQRNWPAMDVAPLI 432

Query: 418 ------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL+ L  L   +I  EL+ L  E      +L
Sbjct: 433 LLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNKLGEEIADYLEIL 492

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVI 524
            S  +    I  E+ E++  F+       R+T   E      A L+ + +I++E + V +
Sbjct: 493 RSRPRIQQIIREELLEIRNEFATP-----RKTEIVE----GGADLEDEDLIQREDMVVTV 543

Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571
           S+ G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     K
Sbjct: 544 SHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKMK 603

Query: 572 AYTLPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            + LP G   S RG           GE I  ++ L  N+D        +   ++  +++G
Sbjct: 604 VWRLPLGGPTS-RGKALVNLLPLEAGEQISSIMPLPENEDSW------ADLDVMFATTRG 656

Query: 622 NAFIVEESEIIANTRKGKTFLKV 644
                + S+     R GK  +K+
Sbjct: 657 TVRRNKLSDFTQVNRNGKIAMKL 679


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 374/609 (61%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KAEFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L  GR P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E +  D +     +I  + + + ISN G+I+  SL  +       V   A 
Sbjct: 477 -GDERRSIIEYAGGDVSITD--LIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      + +P G+  S    G AIQ LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AFV
Sbjct: 591 D-DEVKAFV 598


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/611 (38%), Positives = 369/611 (60%), Gaps = 29/611 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N +  +E+ +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +GL 
Sbjct: 7   NQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMQGLGLQ 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSAR+VGEV+GK HPHGD SVYD++VR+AQP+  RY LI GQGNFG+IDGD AA
Sbjct: 67  SNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSIDGDGAA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+ ++AE +L  +++D VDFR  +++   EP V P++ PNLL NG+SGIAVGM
Sbjct: 127 AMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSSGIAVGM 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+I  HN+ E+ +A +A ID+ EI+I+ L++++  PDFPTGGII    E + E++  GR
Sbjct: 187 ATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIY-GYEGVREAFETGR 245

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA+  +E        I+VTEIPYQV K+++IE+ AEL+  K+I  + +IRDES  
Sbjct: 246 GRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIRDESDR 305

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +++   R  +  +++ +++  + ++T F +N   L  GR P ++ L  ++  ++ H
Sbjct: 306 DGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGR-PMLLNLKDMIVHFVDH 364

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLT 424
           R EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I++IRN   P      ++S+F L+
Sbjct: 365 RHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSKFGLS 424

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++ LR L  LE  +IK E  +L+ + E + S+L     + + I  E+ EVKE
Sbjct: 425 DIQARAILDMTLRRLTGLERDKIKEEYADLMKQIEYLKSVLADESLRMSIIKEELVEVKE 484

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +        RRT   E+  +    + +  IE E + + IS+ G+I        R+    
Sbjct: 485 AYGDE-----RRT---EIVHSAAELMTEDFIEDENVVITISHEGYIKRTPLTEYRTQGRG 536

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQ 591
                  + ++ D ++    A   + +L  +  GK Y L     P G+  S    G AIQ
Sbjct: 537 GKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYWLRVFEIPEGSRTS---KGRAIQ 593

Query: 592 LLIDLNHNQDI 602
            +I+++  + I
Sbjct: 594 NIINIDKEEKI 604


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/712 (35%), Positives = 394/712 (55%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F  +++KSA
Sbjct: 16  IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 76  GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++E +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 EKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I+++++++ I GPDFPTGGII+ S   I  +Y  GRG   +RA+ 
Sbjct: 196 GEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGS-SGIRSAYETGRGSIIMRAKV 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+RDES  D   V+   
Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++  F  NM  L+ G+ P+ M L  IL+ +++ R EV+ RR+
Sbjct: 315 KREAVADVVLNQLYRYTPLQASFGCNMVALNGGK-PEQMTLLDILRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVMV- 418
            + ++    R  +L GL IA  NIDEIIA+IR    P+                 P++  
Sbjct: 374 KYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAVDIAPLIKL 433

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      + + L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L S
Sbjct: 434 IDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILAS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  ++E+F+       RRT F     AD  +  + +I  E + V +S+ 
Sbjct: 494 RSRIMGIVKDELNALREVFATP-----RRTVFG-FGSADMDS--EDLIAPEEMVVTVSHS 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEE 628
           LP G   + +  G A+  ++ L   + I T        K      ++  + +G     + 
Sbjct: 606 LPIG---TPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K   E    L V+     D V +   N + + F +  +
Sbjct: 663 SDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDV 714


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/676 (35%), Positives = 404/676 (59%), Gaps = 29/676 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+    A+K
Sbjct: 6   QSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +++ +++D +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +  LAL  NP+IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG   +R
Sbjct: 186 HQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++
Sbjct: 245 AKTEIEE-HHGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +LAH+  V+ 
Sbjct: 304 IEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQ-PKVLNLKECLEHYLAHQVIVIR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I++IR+    +     ++ RF L+  Q  A
Sbjct: 363 RRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   L+    ++ ++L   ++  + I  E+ E+KE ++   
Sbjct: 423 ILDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYNDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
               R+T    +S ++     + +I ++ + + +++ G+I        RS K     +  
Sbjct: 482 ----RKTA---ISASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRGGRGIQG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   E D ++     ++   IL  +  GK Y L    +  L     G  I  L+ +  ++
Sbjct: 535 MGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDE 594

Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKV 656
            I T    +   +   L  ++  G A   + S   AN R+G  F + +   +++  V   
Sbjct: 595 YISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSS-FANIRRGGLFAINLREGDELHGVRLT 653

Query: 657 TGDHVAVVGENRKLLI 672
            GD   +VG  + + I
Sbjct: 654 NGDKEVIVGTRQGMAI 669


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 268/756 (35%), Positives = 410/756 (54%), Gaps = 66/756 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  + S   V   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   TDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 62  EMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ G
Sbjct: 122 GDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  +
Sbjct: 182 IAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRSA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+R
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R    D+++  ++  + ++T F  NM  L+ G+ P+ M L  +L+
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+   +    
Sbjct: 360 AFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLME 419

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + ++L+E Q  AIL LRL+ L  L   +I  EL+ 
Sbjct: 420 RRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  +      +L S  +    +  E+  +++ F        RRT F      +     + 
Sbjct: 480 IGVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTP-----RRTIF---GFGNAEMDNED 531

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  E + V +S+ G+I        R+ +      S +  K+ D +     ++T   +L 
Sbjct: 532 LIVPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLF 591

Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614
            S+ G     K + LP G   + +  G A+  ++ L   + + T           S   +
Sbjct: 592 FSSRGIVYKEKVWRLPIG---TPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDV 648

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F
Sbjct: 649 MFATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRF 708

Query: 674 S-IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             ID    M R   GVR  +  DG    VI   I E
Sbjct: 709 PVIDVRVFMGRNSVGVRGINMVDG--DKVISMTILE 742


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 377/610 (61%), Gaps = 34/610 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILRSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541
               RRT   EV         + +I  EP+ V +S +G+++   LK +          LS
Sbjct: 485 ----RRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
              + E D ++    A+T D +L ++  G     K Y +P  + ++    G+A+  LI L
Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVNLISL 593

Query: 597 NHNQDIVTAF 606
             ++ I+   
Sbjct: 594 APDEKIMATL 603


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM E G ++   ++KS
Sbjct: 17  GIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMHENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD AAA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P +SI+ L+  I GPDFPTGGII+  R+ I  +Y LGRG   +R +
Sbjct: 197 LGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    IV++EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  +   V+  
Sbjct: 256 VSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLRDESDREGFRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R +V+ RR
Sbjct: 316 LKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFIAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IR    P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  VK  F+       RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQAIIKTELDAVKSEFATP-----RRTVIVE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ K      S +  ++ D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   + +    G+A+  ++ L+  + I T
Sbjct: 607 RLP---MAAPNARGKALINILPLDQGERITT 634


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/605 (41%), Positives = 380/605 (62%), Gaps = 32/605 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++ L   + +KKS
Sbjct: 10  NVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSLSHRSPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD SVYD+LVR+AQ F  + PL+ GQGNFG++DGD+AAA RYTEAR
Sbjct: 70  ARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNAAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  +++D VDF   Y++  SEP V PS+ PNLL NG+SGIAVGMAT+IP H 
Sbjct: 130 MTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHR 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +  IDNPE SIE +++ + GPDFPTGGII   R+ I ++Y  GRG  +VRA+
Sbjct: 190 LNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIF-GRKGITDAYTTGRGRIKVRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E+ G     I++ E+P+QV KSRLIE IA+L+  K I  + +IRDES  E +R+V+ 
Sbjct: 249 THIEQKG-NKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDREGIRVVME 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ ++F  + M+  F + M  +   + P+V  L  +   +L HR+ V+ R
Sbjct: 308 LKRDAM-SEIVLNNLFKSTQMQVTFGIIMLAIH-NKEPKVFNLMELFDLFLNHRKTVIIR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+GL IA  NIDE+I IIR   ++ + +  ++SRFSL+E Q  AI
Sbjct: 366 RTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSRFSLSEIQAKAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I++EL  LL     ++ +L S +++ NQI  E  E+ EI  K   
Sbjct: 426 LEMRLRRLTGLEIEKIENELAELLKTIAYLEGILKS-EEKINQIIRE--ELIEIGEKYR- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLSAL 543
              RRT   E+         + +I  EP+ V I++RG+I+ +      K H      +A+
Sbjct: 482 -TPRRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKLYEKQHRGGKGKTAV 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              + D ++    ++T D ++ ++  G     K Y +P G   S    G+A+  LI+L  
Sbjct: 538 TTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEG---SRTAKGKAVVNLINLQP 594

Query: 599 NQDIV 603
           ++ I+
Sbjct: 595 DEKIM 599


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/640 (38%), Positives = 384/640 (60%), Gaps = 37/640 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   + E +++YA+S I  RA+PD+RDG KPVHRRI++AM +MGL     F+KSA +V
Sbjct: 11  VDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFRKSANVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+   HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE+R +++
Sbjct: 71  GEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTESRFSKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D++ VDF   Y+    EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+
Sbjct: 131 ALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A+IDNP+I+I+ L++ I GPDFPT G I+     I  +Y  GRG   +RA+  +E
Sbjct: 191 VDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEIL-GYSGIRRAYETGRGSIIMRAKTQIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E G+G   I+VTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES      ++    R 
Sbjct: 250 EDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRIVMELRRD 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P +++ ++F  + M++ F +NM  L   R P+V+ L  +L  +L H+R ++ RR+ + 
Sbjct: 310 VIPKVVLNNLFKHTQMQSTFGVNMLALVDSR-PRVLNLRDMLYYYLEHQRVIIRRRTEYD 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  +IDEII++IR+    ++ +  ++  +SL+  Q  AIL++RL
Sbjct: 369 LKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQAILDMRL 428

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I++E   L+ +  ++ ++L    + +  I  E+ E+KE F    D  R  
Sbjct: 429 QRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEKFG---DERRTE 485

Query: 497 TTFCE--VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            TF E  +  AD       +I +E + + +++ G+I        RS K     +  L  K
Sbjct: 486 ITFDENHIEDAD-------LIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           + D ++     ++ D I+  ++ GK Y L    +  LS    G  I  LI +   +  V+
Sbjct: 539 DDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGER-VS 597

Query: 605 AFV----YDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638
           A +    +D    L   + KG   I++++  E   N RKG
Sbjct: 598 AVIPVKEFDQEHYLFFATKKG---IIKKTTLESYENIRKG 634


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM E G ++   ++KS
Sbjct: 17  GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD AAA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P + I+ L++ I GPDFPTGGII+  R+ I  +Y LGRG   +R +
Sbjct: 197 LGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  +   V+  
Sbjct: 256 VSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLRDESDREGFRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F  NM  L  GR PQVM L  +L  ++A R +V+ RR
Sbjct: 316 LKRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGR-PQVMNLKDLLTLFIAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IR    P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  VK  F+       RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQAIIKTELGAVKSEFATP-----RRTVIVE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ K      S +  ++ D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   + +    G+A+  ++ L+  + I T
Sbjct: 607 RLP---MAAPNARGKALINILPLDQGERITT 634


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 276/779 (35%), Positives = 429/779 (55%), Gaps = 66/779 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V ++ +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+ +MSE+GL    
Sbjct: 2   SLNEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ + ++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE ++ +L+  I GPDFPTG  I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
            VRA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D +
Sbjct: 241 IVRAKAEIEE-ENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGM 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K +  +P++++  ++  + M+  F + M  L +   PQV+ L  +L  ++  ++
Sbjct: 300 RIVIELK-KDANPNVILNLLYKHTKMQDTFGVIMLAL-VNNEPQVLNLKQVLANYIEFQK 357

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I IIR+       K  ++ RF L+E 
Sbjct: 358 EVVTRRTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEK 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+   + ++S+L S ++  + I  E+ E+K  +
Sbjct: 418 QAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRY 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           +       RRT+  +V   +   ++  +I++E + + +++ G+I+ + + +         
Sbjct: 478 NDE-----RRTSIEKV--VNDIDIED-LIQEEEVVITLTHSGYIKRISADTYSSQRRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            + A+  KE D ++      T   +L  +  G+ Y L A  +  +GR   G  I  LI +
Sbjct: 530 GIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAI 589

Query: 597 NHNQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKV 644
             ++ I T           F++  T + LV  +  + F  + +   I  N R G   LKV
Sbjct: 590 EQDEKIETVLSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKV 649

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
                   + +   D V V  +   +     D  P      GVR  + +   I+  +C  
Sbjct: 650 K-------ITRGDADIVIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIA--VCMD 700

Query: 705 IC---EGLTWIDSAG-------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I    E L  I   G         Y R          KRGG G +  K   ++GK + +
Sbjct: 701 IAVEGEDLLVISENGFGKRTPITEYKRQ---------KRGGTGLITYKLSEKTGKVIGA 750


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 379/610 (62%), Gaps = 34/610 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP  +++++LE++ GPDFPTGGII   +  I+E+Y+ GRG  +VRA
Sbjct: 190 RMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L+ +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFILSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EVKE FS   
Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541
               RRT   E+  + +    + +I  EP+ V +S +G+++   LK +          LS
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
              + E D ++    A+T D +L ++  G     K Y +P  + ++    G+AI  LI L
Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVNLISL 593

Query: 597 NHNQDIVTAF 606
             ++ I+   
Sbjct: 594 APDEKIMATL 603


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 373/608 (61%), Gaps = 25/608 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    +
Sbjct: 4   LPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKS 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPLI GQGNFG++DGD AAA RY
Sbjct: 64  YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+I
Sbjct: 124 TEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    L+L  NP+I++ +L+E + GPDFPT GII+  +  I  ++  GRG  +
Sbjct: 184 PPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIIL-GKSGIRRAFETGRGSIQ 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDV 309
           +R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    V
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGV 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  + +  +  +++ +++  + ++T F +NM  L  GR P+++ L   L+E+L H++
Sbjct: 303 RVVIDIR-KDANASVVLNNLYKQTPLQTSFGVNMIALVNGR-PKLISLKEALEEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  +  K  M S   +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE   L+A  E++  +L   ++    +  E+ +++E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEILADEEKLLQIVRNELIDIRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                 G  R +  ++   D     + +I +E I + +S+  +I+ L   +         
Sbjct: 481 ------GDERRSEIQLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +  LS +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVT 604
           ++++ I T
Sbjct: 594 DNDESIST 601


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 390/716 (54%), Gaps = 63/716 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F   +
Sbjct: 12  VSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLLFNKPY 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYT
Sbjct: 72  RKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ +VAE +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ GIAVGMAT+IP
Sbjct: 132 ECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSGGIAVGMATNIP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNP I+I+++L  I GPDFPTGGII+     +  +Y  GRG   +
Sbjct: 192 PHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIIL-GHSGVRSAYETGRGSIIM 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      I+V+EIPYQV K+ ++EK+AEL+  KRI  + D+RDES  D   V
Sbjct: 251 RAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLRDESDRDGYRV 310

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    D+++  ++  + ++  F  NM  L+ G+ P+ M L  +L+ +++ R EV+
Sbjct: 311 VIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVV 369

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------- 418
            RR+ + ++    R  +L GL IA  NIDEII +IR    P+                  
Sbjct: 370 SRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMERRWPASEVAA 429

Query: 419 ---------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                          + ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      
Sbjct: 430 LIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAIGEDIADYLG 489

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +  + +  E+  ++E F+       RRT F   S        + +I  E + V 
Sbjct: 490 ILASRSRIMDIVKSELSALRETFATP-----RRTVFGFGSAEMDC---EDLIVPEDMVVT 541

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
           +S+ G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     
Sbjct: 542 VSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYKE 601

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624
           K + LP G   + +  G A+  ++ L   + I T               ++  +++G   
Sbjct: 602 KVWRLPVG---TPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVR 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
             + S+ I   R GK  +K+  E    L V+   +H  V ++  N + + F +  I
Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDI 714


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/609 (38%), Positives = 375/609 (61%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    ++KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  +EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I I++L+++I  PDFPTGGII    + + E+++ GRG   +RA
Sbjct: 185 NLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES      +++
Sbjct: 244 KSSLEEVN-GKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  GR P+++ L  I+  ++ HR EV+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGR-PEMLNLKDIIYHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDRFELSELQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++   + +  +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDILARKERRMQVIKDELLEVKEKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            GRR T   E +  D +   + MI  E + + IS+ G+I+  SL  +       V     
Sbjct: 479 -GRRST--IEYAGGDLSI--EDMIPDERVIITISHAGYIKRTSLNEYKRQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
           + +  D L+          +L  +  GK      Y +P G   S    G AIQ LI++  
Sbjct: 534 NTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKSSKGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DRVKAFI 598


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/741 (35%), Positives = 408/741 (55%), Gaps = 66/741 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G  F   F+KS
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 131 LAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   GRG   +R R
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EEV +    I+VTEIPYQV K+R++E+IAEL+  K+I  + D+RDES  D VR+V+ 
Sbjct: 250 VHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIE 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + ++T F +N   L+ GR P++M L  I+  ++A R EV+ R
Sbjct: 310 IKRDAI-AEVVLAQLYRFTPLQTSFGVNSLALNGGR-PEMMTLRDIIVAFIAFREEVITR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R  +L GL IA  NIDE+I +IR    P   +  +++R           
Sbjct: 368 RTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLI 427

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+E Q  AIL+LRL  L  LE  +I  EL  +  + E    +L+
Sbjct: 428 QLIDEPGRAIEDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILS 487

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVIS 525
           S  + +  +  E+ E++E F+       RRTT  E    AD     + +I +E + V ++
Sbjct: 488 SRPRLFEVMRGELMEIREQFATP-----RRTTIEENEFEADI----EDLIAREDMVVTVT 538

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572
           N G+I        R+ K      S ++ K+ D L      +T   +L  S+ G     K 
Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKV 598

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626
           Y LP GN    +  G+A+  L+ L+  + I T      D T      ++ V+SKG+    
Sbjct: 599 YRLPLGN---PQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRN 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG 684
             S+       GK  +K+   E++  V       D V +     K + F +  + E    
Sbjct: 656 PLSDFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSR 715

Query: 685 KGVRLQSYKDGGISDVICFKI 705
               ++  +  G  +VI   I
Sbjct: 716 DSTGVRGIRLDGEDEVISMSI 736


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/615 (37%), Positives = 368/615 (59%), Gaps = 31/615 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N EI I++L+++I  PDFPTGGII    + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIY-GYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEEV +G  CI+VTEIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KAIVEEV-KGRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  GR P+ + L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGR-PEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA IR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVRFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  ++++ I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEPRRYDIIKEELAHIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548
            G  R +  E +  D     + MI    + V ISN G+++  +L+ + V       ++G 
Sbjct: 477 -GDERRSIIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                D L+          ++  +  GK      Y +P G        G A+Q LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEP 590

Query: 599 NQDIVTAFVYDSTCK 613
           + D V AF+     K
Sbjct: 591 D-DKVKAFLVTQDLK 604


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/614 (39%), Positives = 376/614 (61%), Gaps = 42/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGII   +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  E +R+V+
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++  ++ L+ MET F + +  +   + P++  L  +L  +L HR+ ++ 
Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLCLFLNHRKTIII 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  A
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ E+KE FS   
Sbjct: 426 ILEMRLQRLTCLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKIELLEIKEQFSSP- 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               RRT   E+  + +    + +I  EP+ V +S +G+++      VDL A   +    
Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYEKQNRGG 532

Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
                    E D ++    A+T D +L ++  G     K Y +P  + ++    G+A+  
Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVN 589

Query: 593 LIDLNHNQDIVTAF 606
           LI L  ++ I+   
Sbjct: 590 LISLAPDEKIMATL 603


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 267/741 (36%), Positives = 408/741 (55%), Gaps = 66/741 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G  F   F+KS
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 131 LARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   GRG   +R R
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EEV +    IVVTEIPYQV K+R++E+IAEL+  K+I  + D+RDES  D VR+V+ 
Sbjct: 250 VHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVE 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + ++T F +N   L+ GR P++M L  I+  ++A R EV+ R
Sbjct: 310 IKRDAI-AEVVLAQLYRFTPLQTSFGVNSLALNGGR-PEMMTLRDIIVAFIAFREEVITR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R  +L GL IA  NIDE+I +IR    P   +  +++R           
Sbjct: 368 RTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLI 427

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+E Q  AIL+LRL  L  LE  +I  EL  +  + E    +L+
Sbjct: 428 RLIDEPGRAIEDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILS 487

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVIS 525
           S  +    +  E+ E++E F+       RRTT  E    AD     + +I +E + V ++
Sbjct: 488 SRPRLMEVMRGELMEIREQFATP-----RRTTIEENEFEADI----EDLIAREDMVVTVT 538

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572
           N G+I        R+ K      S ++ K+ D L      +T   +L  S+ G     K 
Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKV 598

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626
           Y LP GN    +  G+A+  L+ L+  + I T      D T      ++ V+SKG+    
Sbjct: 599 YRLPLGN---PQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRN 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG 684
             S+       GK  +K+   E++  V   +   D V +     K + F +  + E    
Sbjct: 656 PLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSR 715

Query: 685 KGVRLQSYKDGGISDVICFKI 705
               ++  +  G  +VI   I
Sbjct: 716 DSTGVRGIRLDGEDEVISMSI 736


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I N +I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 NEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDE+I +I+N   P   K  +VSR            
Sbjct: 365 TIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V+  +        RR+   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVITEELELVQATYGDE-----RRS---EITAAVHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAVGMAT+IP H +
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  G+G   VRA+ 
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES      ++   
Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N   L  G+ P+V+ L   L+ +L H+  V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+D +IA+IR     D  +  ++++FSL+E Q  AIL+
Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT    VS   +    + +I ++ I + +++ G+I+ L   +          +  ++ 
Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D IL  +  GK Y
Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVY 567


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 272/728 (37%), Positives = 408/728 (56%), Gaps = 69/728 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +L S  +    I  E+  ++E F  +     RRT       A+ A +  + +I 
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIREQFGDA-----RRTEIT----ANSADINIEDLIS 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G 
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVR 688
            R   GVR
Sbjct: 715 GRTATGVR 722


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 358/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +Y+ GRG   +R +
Sbjct: 197 LGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R +V+ RR
Sbjct: 316 LRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IRN   P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ EVK  F+       RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   L    G G+A+  ++ L   + I T
Sbjct: 607 RLP---LAPPNGRGKALINILPLEQGERITT 634


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 358/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +Y+ GRG   +R +
Sbjct: 197 LGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R +V+ RR
Sbjct: 316 LRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IRN   P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ EVK  F+       RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   L    G G+A+  ++ L   + I T
Sbjct: 607 RLP---LAPPNGRGKALINILPLEQGERITT 634


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAVGMAT+IP H +
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  G+G   VRA+ 
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES      ++   
Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N   L  G+ P+V+ L   L+ +L H+  V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+D +IA+IR     D  +  ++++FSL+E Q  AIL+
Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT    VS   +    + +I ++ I + +++ G+I+ L   +          +  ++ 
Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  L   T D IL  +  GK Y
Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVY 567


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/689 (37%), Positives = 394/689 (57%), Gaps = 67/689 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V++ ++  ++   ++  YL+YA+S I  RA+PD RDG KPVHRRII AM + G D+   
Sbjct: 1   MVDKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQ 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RY
Sbjct: 61  FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ +VAE ++  +D++ VDF++ Y++ + EPVV P+++PNLL NG SGIAVGMAT+I
Sbjct: 121 TETRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E  L  IDN EI+I++L++ I GPDFPTGGII+  +  I+  Y  GRG  +
Sbjct: 181 PPHNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIII-GQNDIIPGYEKGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +R    VEE  +    IV+  +PYQV K+ LIEKIAELI  K+I  + D+RDES +D VR
Sbjct: 240 IRGEIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I +  K +++   +++  ++  S ++T F  N   ++  + P+++ L   +K ++  R +
Sbjct: 300 IAITVK-KNVSEAIIINQLYKFSPLQTSFGFNTLAINEKK-PELLNLKQFIKIFVDFREK 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------- 420
           VL +R+ F ++    R  IL GL I+  NIDE+I+IIR    P   K  ++ +       
Sbjct: 358 VLTKRTLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKS 417

Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + L+++QV AIL LRL+ L  +   +I SEL +L     K   
Sbjct: 418 KIDKDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKK 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +LN  K+  N I  E+ E+K+ F+    + RR      V   D     + +I++E + V 
Sbjct: 478 ILNDKKELQNLIKTELAEIKKKFA----VPRRTKLVGAVENVD----VEDVIQEEKVIVT 529

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
           ++N+G+        IR+ K      + +  +E D +       T   +L  S+ G     
Sbjct: 530 VTNKGYIKRTPLTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRL 589

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYD-STCK---LLVVSSKG--- 621
           KA+ +P G   S    G+A+  +  +  +  I  +    YD ST K   L+ V++ G   
Sbjct: 590 KAWKIPEG---SNTSKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIR 646

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKM 650
              I++   I AN   GK  +K+  ++K+
Sbjct: 647 KNSILDFENIQAN---GKIAMKLEKDDKI 672


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/677 (36%), Positives = 382/677 (56%), Gaps = 38/677 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KKSAR+VGEV+GK HPH
Sbjct: 5   YLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGKFHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RYTE RM Q+A  +L+ +D+
Sbjct: 65  GDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLKDLDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V PS  PNLL NG SGIAVGMAT+IP  N++E+ +  +ALI N
Sbjct: 125 ETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIALIGN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCI 268
           PE+ +  L++++I PDFPT GII    E + ++Y  GRG   +RAR  +E   + G   I
Sbjct: 185 PELEVSDLMKFVIAPDFPTAGIIY-GYEGVRQAYLTGRGKVVIRARALIEVTQKNGRESI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D   ++    R     +++ +
Sbjct: 244 VVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + M+  F + M  L  G VP+++ L  +++ ++ HR E++ RR+ F + A +RR  
Sbjct: 304 LYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERRAH 362

Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL I   N+DE+I  IR   + +  +  ++ RF+L+E Q  AIL +RL+ L  +E  
Sbjct: 363 ILEGLKICLDNLDEVITTIRESPDANTAQDRLMERFALSEIQAKAILEMRLQRLTGMERQ 422

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E    LA  +++  +L S ++Q   I  E+ +VKE++        RRT   E+   
Sbjct: 423 KIDAEYKETLATIDELRLILQSPERQMEIIRTELLKVKEVYGDE-----RRT---EIVPQ 474

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           +     + MI +E + + +++ G+I+                ++    K  D ++    A
Sbjct: 475 EGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTGAQAKHDDFIEHMFVA 534

Query: 558 HTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---- 607
            T + IL  +  G     K Y +P AG    GR     ++L     H  + + A++    
Sbjct: 535 STHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIMEL-----HPDEKIKAYINIRN 589

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           +D    +++ ++ G        E     R G   + +   + +       GDH  ++ ++
Sbjct: 590 FDEPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDALLDARLTDGDHQVILAKS 649

Query: 668 RKLLI-FSIDQIPEMSR 683
             L++ F   Q+  M R
Sbjct: 650 SGLVVRFPEVQVRPMGR 666


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/671 (37%), Positives = 385/671 (57%), Gaps = 57/671 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 11  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 71  GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633
           L GR   G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKV 644
             R GK  +K+
Sbjct: 660 VKRNGKIAMKL 670


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/637 (39%), Positives = 375/637 (58%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I +  I++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++MPL  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +++R           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+
Sbjct: 425 ERAGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILASSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/674 (37%), Positives = 385/674 (57%), Gaps = 57/674 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 5   VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 65  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + I+V EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELK-R 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  S M+T F  NM  L+ GR P+ + L   L  ++  R EV+ RR++ 
Sbjct: 303 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLTCFIDFREEVVARRTAH 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420
            ++    R  +L GL +A  N+DE++A IR+     D  + +M  R              
Sbjct: 362 DLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLID 421

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++LTE Q  AIL+LRL+ L +L   ++  EL+ L  + ++   +L S +
Sbjct: 422 DPLSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRE 481

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+REV+E F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 482 RIMGIIADELREVREQFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 533

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 534 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 593

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            SGR G G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 594 QSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTN 653

Query: 634 NTRKGKTFLKVSSE 647
             R GK  +K+  +
Sbjct: 654 VKRNGKIAMKLPED 667


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/632 (40%), Positives = 364/632 (57%), Gaps = 59/632 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR GRG   +RA+  +E
Sbjct: 191 INGCVALIQDPSITIDDLMTHIPGPDFPTAAMI-SGRKGIEDAYRTGRGKIYLRAKAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   IVV EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+  K R
Sbjct: 250 TDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +   ++L+  ++  + ++T F +NM  L  G+ P+V  L   L+ ++ HRREV+ RR+ F
Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLECFILHRREVVTRRTVF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS---------------- 419
            ++    R  IL+GL IA  NID II +I+    P   K  +V+                
Sbjct: 368 ELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQMLERAG 427

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                             ++ LTE Q  AIL+LRL  L  LE  +I  E   LL    ++
Sbjct: 428 DDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLEIIAEL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +LNS ++    I  E+ +V++ F        RRT   E++ A      + +IE+E + 
Sbjct: 488 LHILNSPERLMEVIQEELEKVRDEFGDE-----RRT---EITAASHDIDIEDLIEQEDVV 539

Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S  G+++  K    +         SA   K+ D ++  L A+T D IL  ST G+ Y
Sbjct: 540 VTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLY 599

Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
            L    L   S    G  I  ++ L  N+ I 
Sbjct: 600 WLKVYQLPFASRNARGRPIVNILPLEENERIT 631


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 412/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++ +E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 365/632 (57%), Gaps = 53/632 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM + G D    +KKS
Sbjct: 10  DISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDSTKPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGN+G++DGD  AA RYTEAR
Sbjct: 70  ARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + AE +L  +D++ VDF+  Y+E   EP V P+KFPNLL NG  GIAVGMAT+IP+HN
Sbjct: 130 LAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMATNIPTHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A IDNPEI+I++L++ + GPDFPTG +I+  R  I  +Y  GRG   +RA+
Sbjct: 190 LGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALIL-GRSGIRSAYHTGRGSIVMRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE+ +  W IVVTEIPYQV K++L E+IAE++  K +  + D+RDES  D VR+V+ 
Sbjct: 249 TDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRDGVRVVIE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++  +F  + ++T F +NM  L+ GR P+++ L  I+  ++  R +V+ R
Sbjct: 309 LK-RDAVADVVLNQLFRFTPLQTSFGVNMLALNGGR-PELLDLKSIIAAFVRFREQVITR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R   L GL +A  NIDE+IA+IRN   P   +  M++R           
Sbjct: 367 RTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPALDVAPLI 426

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL  L  LE  +I  EL+ ++ +   + ++L
Sbjct: 427 QLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIRHLLAIL 486

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVI 524
                  + +  E+ ++K  F        RRTT  E+   AD   L    I++E + V++
Sbjct: 487 ADRGLLLDILRGELVDMKARFGNP-----RRTTIEELEFEADVEDL----IQREDMVVIV 537

Query: 525 SNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +  G+I+ +   +           S +  K  D++     A+T   +L  +  G  YTL 
Sbjct: 538 TQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYTLK 597

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606
              L  G  +  G+A+  L+ L     I T  
Sbjct: 598 VWRLPQGTPQTRGKALVNLLPLEEGDFITTVM 629


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 251/670 (37%), Positives = 399/670 (59%), Gaps = 37/670 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+  QGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+
Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  ++R+R  +EE G G 
Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    VR+V+  + +  +  
Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H++ V+ RR+ + ++  
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E Q  AIL++RLR L 
Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E + LL    +++++L   +     +  E+ E+++ F        RRT   
Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551
           E+       L+ + +I +E I + +S+  +I+ L   +          +  ++  E D +
Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              +   T D +L  +  G+ Y L    +  LS +  G  +   I+L +++ I T     
Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
             +S    LV ++K    +V+ S  ++N     R GK  +    ++++  V   +G    
Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663

Query: 663 VVGENRKLLI 672
           ++G +   LI
Sbjct: 664 LIGTSHASLI 673


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/671 (38%), Positives = 385/671 (57%), Gaps = 57/671 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 11  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 71  GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLID 427

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL SL  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633
           L GR   G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKV 644
             R GK  +K+
Sbjct: 660 VKRNGKIAMKL 670


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/705 (35%), Positives = 404/705 (57%), Gaps = 39/705 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V  + +   L++ +LAY++S I  RA+PD+RDG KPVHRRI++ M ++G+    +
Sbjct: 3   IFEGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKS 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ +GK HPHGD S+YD++VR+AQ F  RYPLI G GNFG++DGDSAAA RY
Sbjct: 63  YSKSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +L  +D+D VDF   Y+E++ EP V PSKFPNLL NG+SGIAVGMAT+I
Sbjct: 123 TEVKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALID---------NPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           P HN+ E+ +    LID         + EI+ EKLL+ I GPDFPT G+++ + E I ++
Sbjct: 183 PPHNLGEVIDGVNYLIDQQGAEAPDSDQEIT-EKLLKLIKGPDFPTAGLLMGT-EGIQKA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           Y  GRG  ++RA+  +E++ + +   I+VTEIP+ V KSRLIEKIAEL+  K+I  + D+
Sbjct: 241 YTTGRGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDL 300

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R ++P +++  ++  + ME  F +N+  L  G  P+ + L  +L
Sbjct: 301 RDESNRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDG-TPKTLTLKAML 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + ++AH++EV+ RR+ F ++       I++GL  A   IDE+I IIR   N++  +  ++
Sbjct: 360 EYFIAHQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +RF  +E Q  AIL++RLR L  LE  ++ ++   L  E     ++L S K     I  E
Sbjct: 420 TRFEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDEIAYHLAVLQSDKMVREIIKTE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530
           + E++  +    D  RR     + ++ D     + +I  E + + ++++G+I        
Sbjct: 480 LGEIRVKY----DNPRRSIITIDTTKMD----IEDLIADEDVVITVTHKGYIKRLPLTTY 531

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGE 588
           RS +     ++ +   E D ++    A T   IL  ST GK Y L A  +  +GR   G 
Sbjct: 532 RSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRAHAIPDAGRTAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           A+  L++L+ ++ I        +     LL V+ KG        E     + G   L + 
Sbjct: 592 AMINLLNLSQDEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLD 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            ++++  V +  G D + +   + K++ F  + +  M R  +GVR
Sbjct: 652 DDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPMGRTARGVR 696


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 410/715 (57%), Gaps = 56/715 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQ-GGVPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F     + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLEHDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFADE 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 597

Query: 586 HGEAIQLLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFL 642
            GE IQ +I++  +H+QD    F    T +L VV     A         AN R+ G   L
Sbjct: 598 EGETIQTIINVEQDHSQDSYLFF----TTRLGVVKRTSVAD-------FANIRQNGLKAL 646

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +  E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 647 NLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDG 701


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/607 (40%), Positives = 360/607 (59%), Gaps = 57/607 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+   +KK
Sbjct: 12  KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+I++L+ YI GPDFPT  +I   R+ IV++Y+ GRG   +R+
Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRS 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E    G   I+VTEIPYQV K+R+IEKIAEL+  K++  +  +RDES +D +RIV+
Sbjct: 251 KANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVI 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    ++++ ++F L+ ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ 
Sbjct: 311 ECK-RDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQ-PKLFNLKEMLKCFVDHRREVVT 368

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  IL+GL +A  NIDEII +I+N   P   K  +V+R          
Sbjct: 369 RRTIFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADM 428

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + LTE Q  AIL LRL  L  LE  +I  E   LL 
Sbjct: 429 LERAGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLD 488

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++  +L S ++    I  E+  V++ +        RRT   E+  A      + +I 
Sbjct: 489 EIAELMHILASTERLMEIIRDELITVRDTYGDE-----RRT---EIGAAIHDIDIEDLIT 540

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S  G+++        + +      SA   K+ D ++  L A+T D IL  ST
Sbjct: 541 QEDVVVTLSREGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFST 600

Query: 569 DGKAYTL 575
            GKAY+L
Sbjct: 601 RGKAYSL 607


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/671 (36%), Positives = 395/671 (58%), Gaps = 29/671 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   + + YL Y++S I  RA+PD+RDG KPVHRR++  M+E+GL  G ++KK
Sbjct: 4   EKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDS+VR+ Q F  RYPL+ GQGNFG++DGD+ AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  IL+ +D++ +DF   +++   EP+V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+NPEI+IE+L+ YI  PDFPT GII      + ++Y  GRG   +RA
Sbjct: 184 NLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIY-GYNGVRDAYLTGRGKIVLRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           +  VE   + G   I++TE+PYQV K+RLIEKIA L+  K++  + D+RDES  D +R+V
Sbjct: 243 KVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRVV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++   +++  +F L+ ++  F + M  L +G +P+V+ L   ++ ++ HR EV+
Sbjct: 303 IELKKDAV-TQVVINRLFKLTQLQETFGVIMLAL-VGGIPRVLTLKETIQYYVNHRHEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F +   +RR  IL+GL I   N+DEIIA IR   + +  +  +++ FSL++ Q  
Sbjct: 361 LRRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMATFSLSDLQAK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ E   LL   E + ++L + K Q   I  E+ ++K+ +   
Sbjct: 421 AILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAILANEKLQMQLIKKELLQIKKTYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
                RRT    V   +  +++  MI +E + + I+++G+I+                +S
Sbjct: 481 -----RRTQI--VYETEDFSVED-MIAEEDVVITITHQGYIKRFPVSGYRRQGRGGRGIS 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
            +  +E D ++    A T   IL  ++ GK Y L    +  +GR   G +I  LI+    
Sbjct: 533 GVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAGRTARGRSITNLIEFATG 592

Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I   +    ++ T  +++ +  G       SE     R G   + ++  +++      
Sbjct: 593 EKIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGASLT 652

Query: 657 TGDHVAVVGEN 667
            G H  V+ +N
Sbjct: 653 DGSHQIVLAKN 663


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/593 (39%), Positives = 368/593 (62%), Gaps = 27/593 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ ++ YA+S I +RA+PD+RDG KPV RRI+ A  + G+  G    KSA+IVGEV+GK
Sbjct: 13  LKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSAKIVGEVMGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR++ +   +LQ
Sbjct: 73  YHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARLSPIGAEMLQ 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN+ E+ +A +A
Sbjct: 133 DMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNLSEVVDALVA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP I++E+++ ++ GPDFPTGG +  SR+ I E+Y  GRG  +VRA+  VEE G   
Sbjct: 193 MIDNPGITLEEVMAHLPGPDFPTGGRL--SRKGIKEAYATGRGSLKVRAKVRVEEKG-SR 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES  + +RI +  K R  +P +
Sbjct: 250 PMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK-RGANPQV 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + +++ F +N+  +  G  P+V+ L  +++ +L HR+EV+ RRS F ++  +
Sbjct: 309 VLNQLYKHTALQSSFTVNLLAIVEGE-PRVLSLLDLMRHYLDHRKEVVRRRSLFDLRKAE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GLLIA  +IDE+IA+IR +ED P  +  ++ RF L+E Q  AIL++RL+ L  
Sbjct: 368 ERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMERFGLSEAQAQAILDMRLQRLVA 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E   L+ E  ++ ++L    + W ++  E+  VKE +  +     RRT   E
Sbjct: 428 LEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDA-----RRTLLTE 482

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKI 553
               +++   + +IE EP+ + ++ +G+++ L   +          L A   KE D    
Sbjct: 483 F---EESFNPEDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKTKEEDEATH 539

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
              A   D +L+ S  G+ Y L   +L  +  +  G  ++ L+ L   +++  
Sbjct: 540 VFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVAA 592


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/637 (39%), Positives = 373/637 (58%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I++  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIEDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++M L  IL+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+GL IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSSERLMEVIREELELMRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/635 (40%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 AEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE  G+ G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++PL  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILPLKDILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR E  P   K  +V+R           
Sbjct: 365 RTIFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 DRAGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +       I  E+  +KE ++       RRT   E++        + +I +
Sbjct: 485 IAELIRILQNPDCLMEVIREELVAIKEQYNDP-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D ILL S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRMYWMKVYQLPEASRGARGRPIVNLLPLESNERI 631


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/659 (39%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  IS+E L+ YI GPDFPT  II   +  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + M+  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+GL +A +NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  +KE ++      +RRT   E++        + +I +
Sbjct: 485 IAALLFILRSPERLMEVIREELEAIKEQYND-----QRRT---EITHNSADINIEDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y L    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQNERI-TAILPVREYEEGLNVFMATASGT 654


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 275/734 (37%), Positives = 414/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMALKEILAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+GL IA  NID II +IR                          
Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT- 654

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   D V +     K++ F  D + 
Sbjct: 655 --VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVR 712

Query: 680 EMSRG----KGVRL 689
            M R     +G+RL
Sbjct: 713 PMGRTATGVRGIRL 726


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 270/756 (35%), Positives = 432/756 (57%), Gaps = 39/756 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+   + +KKSARIV
Sbjct: 6   VKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSARIV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY++LVR+AQ F  R PLI GQGNFG+IDGD+AAA RYTEAR+T++
Sbjct: 66  GDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARLTKI 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 126 AEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEL 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +IDN E ++E +L++I GPDFPTGGII      + E+Y+ GRG  ++RA+  +E
Sbjct: 186 IDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGIL-EAYKSGRGSIKIRAKHHIE 244

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
             G     IV+ E+PYQV K++LIEKI+EL+  K I  + +IRDES  E +R+V+  K  
Sbjct: 245 HRG-NREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIELKKD 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++  ++++ +++  + M+  F +NM  + + + P++  L  IL  ++  R+ V+ RR+ +
Sbjct: 304 AM-SEIILNNLYKHTQMQVSFGINMLAI-LDKEPKLFNLMEILNTFIKFRKTVVIRRTIY 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            ++   +R  IL+GLLIA  NIDE++ II+N    K     ++ RF L+E Q  AIL+++
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIERFDLSEVQAQAILDMK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +++ E D L  +   + S+L       N I  E  E+++ ++       R
Sbjct: 422 LSRLTSLETNKLQKEYDELQEKIAYLTSILKEESVLNNVIKEEFLEIRKKYA-----NER 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKE 547
           +T   E+         + +I  E + V I++RG+++   LK++           AL   E
Sbjct: 477 KT---EIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKTYERQNRGGKGKKALTTYE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN--- 599
            D ++    A   D +++++  G     K Y +P G+  S    G+AI  LI+L+ +   
Sbjct: 534 NDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTS---KGKAIVNLINLDKDEKI 590

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVT 657
           Q I+    +D    L   +  G       SE       G   + +  ++++    +VK  
Sbjct: 591 QTIIKTSDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTAKIVKED 650

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++ +V +    + F +D + EM R  +GV+  ++K  G   V    + +    I S  
Sbjct: 651 DKYLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQEILSVS 710

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + + +        L  RGG G +  K   ++G  +
Sbjct: 711 EKGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLV 746


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/658 (39%), Positives = 378/658 (57%), Gaps = 63/658 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N +++I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + S   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +NM  L   + P+VM L  IL  +L HRREV+ RR
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NID +I +IR+   P   K  +V+R            
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E  +LL   
Sbjct: 426 KAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E +        RRT   E+S +      + +I  E
Sbjct: 486 AELLFILASPVRLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597

Query: 571 KAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           K Y L    L  + RG  G  I  L+ L+  + I TA +    YD+   +   ++ G 
Sbjct: 598 KVYWLKVYQLPEASRGARGRPIINLLPLDEGERI-TAILPVKEYDADKYVFFATANGT 654


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 272/727 (37%), Positives = 406/727 (55%), Gaps = 67/727 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  ++E F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIREQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 716 RTATGVR 722


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/703 (36%), Positives = 391/703 (55%), Gaps = 63/703 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KSAR V +V+GK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF++TY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R +  +E+ G   
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGNDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+    R    D++
Sbjct: 240 ESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G+ P+++ L  +LK +++ R EV+ RR+ F ++    
Sbjct: 300 LNQLYRFTPLQTSFGANMVALNGGK-PELLTLTDMLKAFVSFREEVITRRTKFLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR--------------------- 420
           R  +L GL IA  NIDE+I +IR    P+     +M  R                     
Sbjct: 359 RAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRIN 418

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL+ L  L   +I  EL+++ AE      +L+S  +    + 
Sbjct: 419 ADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+  V++ F        RRT   E++        + +I++E + V +S+ G+I      
Sbjct: 479 DELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 530

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
             R+ +      S +  KE D +     A+T   +L  S+ G     K + LP GN  S 
Sbjct: 531 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQS- 589

Query: 584 RGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T      D T      ++  +++G     + S+ +   R 
Sbjct: 590 --RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRN 647

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           GK  +K+  E    L V+   D+  V +   + + + FS+  +
Sbjct: 648 GKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDV 690


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME  F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  V+E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINVREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/643 (38%), Positives = 375/643 (58%), Gaps = 56/643 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN + ++ L   ++K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 8   DNSTPTDGL-PSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 67  NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 126

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+ +VA  +L  +D++ VDF++ Y+  +SEPVV P+KFPNLL NG  GI
Sbjct: 127 DPAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +AA+A+++NP +S+E+L++ + GPDFPTGG+I+  R  I  +Y
Sbjct: 187 AVGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 245

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              RG   +RA+  VEEV +    ++VTEIPYQV KS +IEKIAEL+  KRI  + DIRD
Sbjct: 246 ETARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRD 305

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R   PD+++  ++  S ++T F  N+  L+ G+ P+ M L  +L+ 
Sbjct: 306 ESDRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALNGGK-PEQMNLSDMLRA 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +++ R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR    P   +  ++ R
Sbjct: 365 FVSFREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMER 424

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  AIL+LRL+ L  +   +I+ EL+ +
Sbjct: 425 NWPAKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 484

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  +    +  E+ E+K+ F+       RRT   E         ++ +
Sbjct: 485 GAEISDYLEILRSRARIQEIVRNEMLEIKQEFATP-----RRTEIIE---GGPDFDEEDL 536

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I        R+ +      S +  K+ D +     A+T   +L  
Sbjct: 537 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 596

Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           S+ G     K + LP G   S    G+A+  L+ L   + I +
Sbjct: 597 SSRGICYKMKVWRLPLGGPTS---RGKALINLLPLEQGEQITS 636


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332989205|gb|AEF08188.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 264/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME  F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/715 (36%), Positives = 410/715 (57%), Gaps = 56/715 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F     + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 360 TRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFADE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFL 642
            GE IQ +I++  +H+QD    F    T +L VV     A         AN R+ G   L
Sbjct: 591 EGETIQTIINVEQDHSQDSYLFF----TTRLGVVKRTSVAD-------FANIRQNGLKAL 639

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +  E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 640 NLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDG 694


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 264/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME  F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/677 (37%), Positives = 402/677 (59%), Gaps = 30/677 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L Y++S I ERA+PD+RDG KPVHRRI+HAM+E+G+     FKKSARIVGEVIGK
Sbjct: 17  MKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSARIVGEVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 77  YHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARMSKIAMEMLK 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+ E+ EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E  +A  A
Sbjct: 137 DINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIPPHNLGETIDAIFA 196

Query: 206 LIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++DNP+I++ +L++ YI GPDFPTGG+I+  R  I ++Y  GRG   +R +  +EE+  G
Sbjct: 197 IMDNPDITVLELMDNYIFGPDFPTGGMIL-GRAGIRQAYETGRGSIMIRCKHHLEEMDNG 255

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
              IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  E +RIV+  + + +  D
Sbjct: 256 KTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRIVIELR-KDVQVD 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  +F ++ ++T F +NM  L   R P+ M +  +L  ++ H+ +V  RR+ + ++  
Sbjct: 315 VVLNQLFRMTSLQTSFGVNMLALH-DRSPKQMGIKELLGHYIDHQIDVTVRRTKYDLKKA 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+GL IA  +IDEII IIR   N+ + +  ++  F L+E Q +AIL +RLR L 
Sbjct: 374 EDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMENFELSEIQANAILEMRLRRLT 433

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++E   LLA    +  +L +  +    I  E+ EVK  +        RRT   
Sbjct: 434 GLERDKIENEYQELLALIIDLKDILANHDRVLQIIRDELTEVKNKYGDE-----RRT--- 485

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLK 552
           E+S AD     + +I  E I + ++  G+I+ + + +          +  +   E D ++
Sbjct: 486 EISDADYDMQDEDLIPVEDIVITMTTNGYIKRMPTDTYHTQNRGGRGIKGMAVNEDDIVE 545

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFV 607
           + +   T D +LL +  GK Y +    + +     + + ++  LN ++D     +V   V
Sbjct: 546 MLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAKGLPVVNLLNLDKDEKVKALVPMKV 605

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
                 L+ V+  G    V  +E  +  + GK  + +   +++  V + TG D + + G 
Sbjct: 606 DHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGVKETTGDDEIIIAGS 665

Query: 667 NRKLLIFSIDQIPEMSR 683
           N K + F  D +  M R
Sbjct: 666 NGKAVRFHEDGVRPMGR 682


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 275/734 (37%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMTLKEILAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+GL IA  NID II +IR                          
Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT- 654

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   D V +     K++ F  D + 
Sbjct: 655 --VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVR 712

Query: 680 EMSRG----KGVRL 689
            M R     +G+RL
Sbjct: 713 PMGRTATGVRGIRL 726


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/671 (37%), Positives = 385/671 (57%), Gaps = 57/671 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 11  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 71  GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633
           L GR   G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKV 644
             R GK  +K+
Sbjct: 660 VKRNGKIAMKL 670


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/605 (41%), Positives = 367/605 (60%), Gaps = 62/605 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALIDNP+++I++L+E+I GPDFPT GII   R  IVE+YR GRG   +RAR  +E
Sbjct: 191 VNGCLALIDNPDLTIDELMEFIPGPDFPTEGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              + +   I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES  E +R+V+  + 
Sbjct: 250 HDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +PD+++ ++F  + +ET F +NM  L  G  P+ + L  +L  ++ HRREV+ RR+ 
Sbjct: 309 RGENPDVVVNNLFAQTQLETVFGINMVGLINGE-PKTLNLKQLLDAFVRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           + ++    R  IL+GL +A  NIDEII +I+      E K K +           M+ R 
Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMAMLERA 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++++E   +L   +K
Sbjct: 428 GQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL---DK 484

Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           I  LL+     ++  Q+   IRE  E+ +  T+ G  R T    SR D       +I++E
Sbjct: 485 IADLLDILGDPERLLQV---IRE--ELEAIVTEFGDERRTEITSSRRDLTIAD--LIDEE 537

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+ ++                +A   K+ D ++  L A++ D IL  S  G
Sbjct: 538 DLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRG 597

Query: 571 KAYTL 575
           K Y L
Sbjct: 598 KVYWL 602


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/701 (36%), Positives = 394/701 (56%), Gaps = 63/701 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 26  VSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTKVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  S M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLSSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR                             D
Sbjct: 383 DLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPASDIAPYIRLID 442

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S +
Sbjct: 443 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV++ F+       RRT   + S        + +IE+E + V I++ G+
Sbjct: 503 RILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATSAGDVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
             R GK  +K+  +  +KLV      +  +  E+  +++F+
Sbjct: 675 VRRNGKIAMKLPEDGSVKLV------NARICSEDDDVMLFT 709


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 386/605 (63%), Gaps = 29/605 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES  + +RIV+
Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  + ++++ +++  + +ET F + +N+  +  VP+++ L  ++K ++ H+++V+ 
Sbjct: 306 EVK-RDANANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYVKHQKDVVR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +    +R  I++GL+IA  NIDEII IIR   + D+ K +   +F LT+ Q  A
Sbjct: 364 RRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           IL+++L+ L  LE  ++++E D  LAEK E   S+LN  ++  + I  EI E+KE ++  
Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADD 482

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT        D+     + +IEKE + + +++ G+I+ L  ++          +
Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
           SA + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  LI L+ 
Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSS 593

Query: 599 NQDIV 603
           ++ I 
Sbjct: 594 DEKIT 598


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 354/571 (61%), Gaps = 23/571 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  + L   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E G      + KSA
Sbjct: 8   VVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VG+V+G+ HPHGD ++YD+ VRLAQ F  RY LI G GNFG+IDGD AAA RYTE RM
Sbjct: 68  GLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +D++ VDF+  Y+++  EP V PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +A + +I+NP+ ++E L+  + GPDFPTG +I+  RE I ++Y  GRG   +RA+ 
Sbjct: 188 AEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIM-GREGIRQAYTTGRGSIIMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++      I+V EIPYQV KS+L+E+IAEL+  KR+  + D+RDES      ++   
Sbjct: 247 RIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P +++  +F  + M+  F + M  L  G VP+V+ L  +L  +L H+++V+ RR+
Sbjct: 307 RRDVNPQIVLNQLFKYTQMQETFGVIMLALVDG-VPKVLNLRDMLYYYLEHQKDVIVRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  NID II II   R+ED+ +P+++  F+L+E Q  AIL+
Sbjct: 366 RYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILMGEFNLSEKQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   LL+      ++L+S K   + I  EI E+KE F+      
Sbjct: 426 MRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEKMVLDIIKKEISEIKEKFADP---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            RRT   E++ +      + +I +E   + I++ G+I+ L  ++          ++ +  
Sbjct: 482 -RRT---EITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNTYKAQRRGGRGVTGMGT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTD-GKAYTL 575
           KE D ++  L   TT   LL  TD GK Y L
Sbjct: 538 KEDDFVE-HLFVTTTHHTLLFFTDRGKVYRL 567


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 278/729 (38%), Positives = 399/729 (54%), Gaps = 93/729 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      + KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 THELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNP+I ++ L+EYI GPDFPT GI V     I+  YR GRG  R+RAR  +E
Sbjct: 191 INACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRARAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 IQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++ +++  + ME+ F +NM  L  GR PQ++ L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 EAADVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQLLEAFVRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV--------- 418
           ++    R  IL+GL +A  NIDE+I +I+    P            +P +V         
Sbjct: 369 LRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALLSAAGA 428

Query: 419 --SR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
             SR              + LTE Q   IL +RL  L  LE+ ++  E   LL   E I 
Sbjct: 429 EASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL---EAIS 485

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L+    +  + +   IRE  E+ S   + G  R T    S  D   L   +I  E + V
Sbjct: 486 GLIRI-LENPDVLLEVIRE--ELVSIREEYGDARRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG    GR          GE +Q ++ +    D    +V+ +T K +V  + 
Sbjct: 601 LPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYAD--GHYVFFATRKGMVKKTP 658

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
                   SE     ++GK  + ++ +E   LV       VA+    R +L+F+      
Sbjct: 659 -------LSEFAYQLKRGK--VAINLDEGDALV------DVALTDGERDVLLFA------ 697

Query: 681 MSRGKGVRL 689
            S GK VR 
Sbjct: 698 -SNGKTVRF 705


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/641 (36%), Positives = 374/641 (58%), Gaps = 39/641 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD    +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L++++  PDFPTGGII    + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIY-GYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KAVIEEV-KGRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  GR P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGR-PEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I IIR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIERFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDILANEPRRYQIIKDELLHIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548
            G  R +  E +  D     + MI    + V ISN G+++  +L  + V       ++G 
Sbjct: 477 -GDERRSTIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLDEYKVQNRGGRGQKGA 533

Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                D L+          ++  +  GK      Y +P G        G A+Q LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEQ 590

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           +         DS    LV     N   +    +I  T+KG+
Sbjct: 591 D---------DSVKAFLVTQDLKNEEYINSHYVIMATKKGQ 622


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIALR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L   ++   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/662 (37%), Positives = 380/662 (57%), Gaps = 73/662 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  A+ KS
Sbjct: 7   NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA +DN EISI++L++YI GPDFPT  +I   R+ I E+Y+ GRG   VRA+
Sbjct: 187 LNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   +G   IVVTEIPYQV K++L+EKIAEL+  K+I  + ++RD S ++   V   
Sbjct: 246 AEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ M+  F +NM  L  G+ P+++ L  I++ ++ HRREV+ RR
Sbjct: 306 VKRDAVGEVVLNNLYALTQMQVTFGINMVALDHGQ-PKLLNLKQIIEAFVRHRREVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------- 410
           + F ++    R  IL+GL IA  NID +I +IR                           
Sbjct: 365 TVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLS 424

Query: 411 ----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
               D  +P        ++  ++ L++ Q  AIL+LRL+ L  LE  +I +E   +L E 
Sbjct: 425 ATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K+  +LNS  +    +  E+ +VKE F  +     RRT   E++ A      + +I +E
Sbjct: 485 GKLLHILNSADRLKEVLCEELEKVKEEFGDA-----RRT---EITSASGDINLEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  S+ G
Sbjct: 537 DVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRG 596

Query: 571 -----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619
                K Y LP  N    RG  G  I  ++ L  N+ I     V A+  D   K +V+++
Sbjct: 597 RLYWLKVYQLPQAN----RGARGRPIVNILPLQENERITAILPVAAYEED---KFIVMAT 649

Query: 620 KG 621
            G
Sbjct: 650 AG 651


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 412/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSAERLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGEDSVVSLIIPRG 740


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 278/729 (38%), Positives = 399/729 (54%), Gaps = 93/729 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      + KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYTEARM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 THELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNP+I ++ L+EYI GPDFPT GI V     I+  YR GRG  R+RAR  +E
Sbjct: 191 INACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRARAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 IQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++ +++  + ME+ F +NM  L  GR PQ++ L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 EAADVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQMLEAFVRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV--------- 418
           ++    R  IL+GL +A  NIDE+I +I+    P            +P +V         
Sbjct: 369 LRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALLSAAGA 428

Query: 419 --SR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
             SR              + LTE Q   IL +RL  L  LE+ ++  E   LL   E I 
Sbjct: 429 EASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL---EAIS 485

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L+    +  + +   IRE  E+ S   + G  R T    S  D   L   +I  E + V
Sbjct: 486 GLIRI-LENPDVLLEVIRE--ELVSIREEYGDARRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG    GR          GE +Q ++ +    D    +V+ +T K +V  + 
Sbjct: 601 LPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYAD--GHYVFFATRKGMVKKTP 658

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
                   SE     ++GK  + ++ +E   LV       VA+    R +L+F+      
Sbjct: 659 -------LSEFAYQLKRGK--VAINLDEGDALV------DVALTDGERDVLLFA------ 697

Query: 681 MSRGKGVRL 689
            S GK VR 
Sbjct: 698 -SNGKTVRF 705


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 268/763 (35%), Positives = 432/763 (56%), Gaps = 49/763 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+   +    KK ARIV
Sbjct: 5   VNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCARIV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY++LVRLAQ F  R PL  GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  +D++ VDFR  Y+   +EPVV P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 ASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLSEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LID PE S+E L++ + GPDFPTGG  V + + + ++Y  GRG  +VR +  +E
Sbjct: 185 SDALLMLIDAPESSVEDLMDVVQGPDFPTGG-YVYAGQGLYDAYTTGRGTVKVRGKVEIE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   +++ EIP+ + KS L+EKIA LI  ++I  + D+RDES    +R+V+  K  
Sbjct: 244 DRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKRG 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++ P++++ S++  + +ET F +NM  +   R P ++ L   L  +L HRREV+ RR+ F
Sbjct: 304 TM-PEIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALAYFLDHRREVVVRRTKF 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GLL A  +IDE++++IR+   P   K  ++ RF L+E Q  AIL++R
Sbjct: 362 ELRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQRFELSEVQAQAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL +LL++     S+L      W  I  E+  +K+ +S       R
Sbjct: 422 LQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVLWGVIRDEVEYIKQTYSTP-----R 476

Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
           RT   EV R   + +  + ++  + + + +S RG+I+          +     ++ +H  
Sbjct: 477 RT---EVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTG 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ---D 601
           E D ++  +       +L+ +  G+ + L    +  G    + + +  L+ +  ++    
Sbjct: 534 EDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNT 593

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTF-LKVSSEEKMKLVVKVTG 658
           I+T   +      L  + +G   +V+ S   + A +RKG    + +  ++++ +V ++T 
Sbjct: 594 ILTVREFAEDKSFLFATRRG---MVKRSSAALYARSRKGGLIAVGLREDDELIMVREITD 650

Query: 659 DHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE---GLT 710
           D   V+     + I FS   +  M RG    KG+ L+     G + V C  + E    + 
Sbjct: 651 DDFVVLATADGIAIRFSCRDVRNMGRGATGVKGIALRH----GDTVVACLVLKEDSPAIM 706

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I + G  + +  N  L  +  RGG G +  K  P++G  + +
Sbjct: 707 TISALG--FGKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGA 747


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           +++I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/665 (37%), Positives = 381/665 (57%), Gaps = 39/665 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L + YL YA+S I  RA+PD+RDG KPVHRR + AM E+G  +   + KSARI
Sbjct: 13  TIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAMRELGNTYNRPYIKSARI 72

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD + YD+LVR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTEARMT+
Sbjct: 73  VGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDSAAAMRYTEARMTR 132

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + ++  +D++ VDF   Y+    EP V PS+ PN+L NG+ GIAVGMAT IP HN+ E
Sbjct: 133 LDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSEGIAVGMATKIPPHNLTE 192

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +AL+DNPEI++ +L+E I GPDFPTGG I   R  I E+Y  GRG   +R++  +
Sbjct: 193 VINGLIALVDNPEITVHQLMEIITGPDFPTGGFIC-GRAGIREAYETGRGVIVMRSKTHI 251

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           E+ G     IV+TEIP+Q  K+ L+EKIA L+  KRI  + +IRDES    VR+VL  + 
Sbjct: 252 EQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIRDESDRHGVRVVLDLRK 311

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             + PD+++  ++ ++ ++  F + +  +   + P+++ L  IL+ +LAHR+ V++RR++
Sbjct: 312 DEI-PDIVINQLYKMTPLQKSFGIILLCIVNNK-PEILNLKQILQHFLAHRKTVVYRRTA 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           F ++  + R  IL+GL IA  ++DE++ +IR    P   K  ++ RF L+E Q   IL++
Sbjct: 370 FELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILRFELSEIQAQTILDM 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I S+ + + A+   +  +L         I  E  +++E +        
Sbjct: 430 RLQRLTGLERDKIISDYNEIQAKISWLKQVLADDNLVVQIIREEFEKIREEYGDD----- 484

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
           RRT   E+  A    L + +I  E + V +S+ G+I        R+ +     +  +   
Sbjct: 485 RRT---EIIDAPDEILPEDLITPEEMVVTVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTL 541

Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQ 600
           E D +     A + D  L  +  G     K Y LP    L+GR   G+AI  L++L  ++
Sbjct: 542 EDDFVTSLYTASSLDTFLFFTNKGRVFWRKVYELP----LAGRTARGKAIVNLLELGEDE 597

Query: 601 DIVTAFV------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            +            D T  +L V+ +G       SE     RKGK  L +  ++++    
Sbjct: 598 KVAAILPVADLANMDDTVSVLTVTKQGRVKKTFISEYKRPLRKGKFGLTIRDDDEILSAA 657

Query: 655 KVTGD 659
             +GD
Sbjct: 658 ITSGD 662


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDTYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/611 (38%), Positives = 372/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   DRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEI I +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VRA
Sbjct: 187 HLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIM-GRSGIRRAYETGRGSIVVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   I++TEIPYQV K+RLIE+IAEL   K+I  + DI DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ +++ ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIINNLYKMTALQTTFGINMLAL-VDNHPKVLNLKQILYHYLEHQKIVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID +IA+IR+ +     K  ++++F L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTKFQLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+     + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEERILEIIREELEEIKIKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D   ++ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILTGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  + A + D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVAASSHDTLLFFTNTGKVY 567


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/638 (39%), Positives = 372/638 (58%), Gaps = 62/638 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA ID+  IS+E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P++M L  IL+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKIMALKEILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+GL I+  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +L S ++    I  E+  +++ F        RRT       A+ A +  + +I 
Sbjct: 485 IAELLHILASAERLMEVIREELEAMRDQFGDD-----RRTEIT----ANSADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME  F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       +  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVVRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIALR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 22  DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 82  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 141

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 142 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 201

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 202 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 260

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 321 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 378

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 379 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 439 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 497

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 498 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 667

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 668 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 713


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 382/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE  G+ G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 341/595 (57%), Gaps = 47/595 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 16  DIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 76  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  R+ I  +Y LGRG   +R +
Sbjct: 196 LGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  +   V+  
Sbjct: 255 VSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDLRDESDREGYRVVVE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR PQVM L  +L  ++A R  V+ RR
Sbjct: 315 LKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGR-PQVMNLKDLLTVFVAFRENVVSRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDE+I +IR    P   +  ++SR            
Sbjct: 374 TKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMSRDWPARDVETMMM 433

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 434 LIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDKLAVEIADYLDILR 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + +  E+  +KE F+       RRT   +    +     + +I++E + V +S+
Sbjct: 494 SRARVQDIVRNELNAIKEEFATP-----RRTMIID---QEGEVEDEDLIQREDMVVTVSH 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            G++        R+ K      S +  +E D +     A T   +L  S+ G+ Y
Sbjct: 546 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY 600


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 417/745 (55%), Gaps = 75/745 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVRMARL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHNMVEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALID+  +S++ L+EYI GPDFPTGGII   R  I+E+YR GRG   VRAR  +E
Sbjct: 191 IDGCLALIDDYTLSVDDLMEYIPGPDFPTGGII-NGRAGILEAYRTGRGRIYVRARHTIE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              + G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES  E +R+V+  K 
Sbjct: 250 HDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIEVK- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ++  F +NM  L  G  P+ + +  +L+ ++ HRREV+ RR+ 
Sbjct: 309 RGESGEVVVNNLFAQTQLQNVFGINMVALDGGE-PRTLNIKEVLEAFIRHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NEDKPK-------PVMVS------ 419
           F ++    R  IL+GL +A  NIDE+I +I+     NE K K       P  V+      
Sbjct: 368 FELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLERA 427

Query: 420 ---------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL LRL  L  LE  ++  E   +L + 
Sbjct: 428 GATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILEKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++ ++L S  +    I  E+  V++ F      G  R T  + S  D +   + +I +E
Sbjct: 488 AELTAILASADRLLEVIREELTAVRDQF------GETRRTEIQASHLDLSI--EDLIAEE 539

Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S  G+ ++  L  +          SA   K+ D ++  L A T D +LL S  G
Sbjct: 540 DMVVTVSRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRG 599

Query: 571 KAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFI 625
           K Y L    +  + RG  G+ +  L+ L  ++    I+    YD    +   ++KG    
Sbjct: 600 KVYWLKVYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDPDSYIFFATAKGT--- 656

Query: 626 VEESEIIANTR-KGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           V+ + +   +R +    + +  EE  +LV   +    DH  ++  N K + F    +  M
Sbjct: 657 VKRTSLAQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM 716

Query: 682 SR-GKGVRLQSYKDGGISDVICFKI 705
            R  +GVR     DG  ++VI   I
Sbjct: 717 GRTARGVRGMRLLDG--AEVISLII 739


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/736 (35%), Positives = 420/736 (57%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI+ PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+  K+    +  E+ E+++ +       +R++   E SR D    
Sbjct: 479 FKELIDRIKYLISILSDIKELIRVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/632 (38%), Positives = 369/632 (58%), Gaps = 55/632 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V  ++K +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M+E G ++   +
Sbjct: 13  VPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNENGYEWNKPY 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+IDGD AAA RYT
Sbjct: 73  RKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSIDGDRAAAMRYT 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG  GIAVGMAT+IP
Sbjct: 133 ECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIP 192

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+A++ NP +++ +L++ + GPDFPTGGII+  R  I  +Y  GRG   +
Sbjct: 193 PHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIIL-GRSGIRSAYESGRGSVVM 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  VEE+ +    ++V+EIPYQV KS +IEKIAE +  KRI  + DIRDES      V
Sbjct: 252 RSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDIRDESDRSGMRV 311

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   PD+++  ++  S ++T F  NM  L+ G+ P+ + L  ILK +++ R EV+
Sbjct: 312 VIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGK-PEQLNLPDILKAFISFREEVV 370

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------KP 415
            RR+ F ++    R  IL GL IA  NIDE+I +IR    P                 +P
Sbjct: 371 QRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLMERDWPARDVEP 430

Query: 416 V---------MVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +         MV     + L+E Q  AIL+LRL+ L  L   +I  EL  + AE      
Sbjct: 431 LIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSKIGAEISDFLD 490

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +  + +  E+ E+KE F+       R+T   E+         + +I++E + V 
Sbjct: 491 ILRSRARIQDIVRGEMLEIKEEFATP-----RKT---EIVDGGADFDDEDLIQREDMVVT 542

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
           +S+ G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     
Sbjct: 543 VSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKM 602

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           K + LP G  +S    G+A+  ++ L   + I
Sbjct: 603 KVWRLPLGGPIS---RGKALINMLPLEQGEQI 631


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 386/605 (63%), Gaps = 29/605 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES  + +RIV+
Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  + ++++ +++  + +ET F + +N+  +  VP+++ L  ++K ++ H+++V+ 
Sbjct: 306 EVK-RDSNANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYVKHQKDVVR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +    +R  I++GL+IA  NIDEII IIR   + D+ K +   +F LT+ Q  A
Sbjct: 364 RRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           IL+++L+ L  LE  ++++E D  LAEK E   S+LN  ++  + I  EI E+KE ++  
Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADD 482

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT        D+     + +IEKE + + +++ G+I+ L  ++          +
Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
           SA + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  LI L+ 
Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSS 593

Query: 599 NQDIV 603
           ++ I 
Sbjct: 594 DEKIT 598


>gi|158338824|ref|YP_001520001.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/697 (38%), Positives = 405/697 (58%), Gaps = 33/697 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V A +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSSGKVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R++ +  + +L+ + E  V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +A +ALID+P++++EKL+  + GPDFPTGG IV  ++ I+++Y  GRG
Sbjct: 186 TNIPPHNLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIV-GKQGIIDAYTNGRG 244

Query: 249 GFRVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              VRA   +EE+  GRG      I+VTE+PYQV K+  IEKIA LI   RI  + D+RD
Sbjct: 245 SITVRAVTSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRD 304

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +RIV+  K R   P  ++E ++ L+ +++ F + M  L  G VP  + L  +L+
Sbjct: 305 ESDREGMRIVIELK-REAQPPAVLEQLYRLTPLQSNFGVIMLALVNG-VPLQLSLKEVLQ 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           ++L  R + L RR   +++    R  +++GL+ A  ++D++I I+R+       K  + S
Sbjct: 363 KFLDFREQTLTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKS 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+ +Q DAIL + +R L  LE+  ++ E D+L  E   ++ LL +  +    +  ++
Sbjct: 423 QFQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLERLLGNRHELLKALKKDL 482

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----K 534
           R +K+ +S       RRT       A K  +  A +  E + V ++ RG+ R +     K
Sbjct: 483 RALKKQYSDP-----RRTVIH--GAAAKTEIFAAPVSDESVIVELNQRGYARCMRVSKRK 535

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-DGKAY--TLPAGNLLSGRGHGEA-I 590
           +++ DLS         L I  H       LLL T  GKAY   L +    S +G G+  +
Sbjct: 536 NNAPDLSGELADVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQSIPFTSSKGKGKPLV 595

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            LL D   + +I+  F+      T +L+++S +G    +  SE    T +G    K+ S 
Sbjct: 596 TLLPDSGRDDEIIARFLSTEISDTSQLILLSQQGKIKRLPMSEFAEMTSRGLGAAKIKSG 655

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
           +++  VVK   + +VA+   + +LL   I +IPEM R
Sbjct: 656 DQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEMGR 692


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 22  DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 82  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 141

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 142 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 201

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 202 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 260

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 321 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 378

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 379 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 439 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 497

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 498 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 667

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 668 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 713


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 403/718 (56%), Gaps = 70/718 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 16  VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTG +++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALML-GRSGARKAYLEGRGSVIIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K R
Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK-R 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR++ 
Sbjct: 314 DATPEVVLNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAH 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420
            ++    R  IL GL +A  NIDEI+  IR      +  + +M  R              
Sbjct: 373 LLRKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALID 432

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + +    +L+S +
Sbjct: 433 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV++ F+       RRT   + S        + +IE+E + V +++ GW
Sbjct: 493 RIMGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGW 544

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 545 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 604

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            SGR G G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 QSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691
             R GK  +K+  +  +KLV      +V +  E+  +++F+       + G+ +R +S
Sbjct: 665 VRRNGKIAMKLPEDGSVKLV------NVRICSEDDDVMLFT-------NSGRAIRFRS 709


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/676 (37%), Positives = 381/676 (56%), Gaps = 57/676 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR+                            D
Sbjct: 383 NLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLID 442

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L+S +
Sbjct: 443 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + IA E+ EV+E F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RIMSIIADELAEVRESFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D   K      ++  +S G       S+   
Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK 649
             R GK  +K   E +
Sbjct: 675 VMRNGKIAMKFEDENQ 690


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/775 (34%), Positives = 428/775 (55%), Gaps = 68/775 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+
Sbjct: 78  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVGMAT+IP HN+
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ N   +IE+L E+I GPDFPT   I+     I E +  GRG   VRA+ 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAKS 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + D+RDES  E +RIV+  
Sbjct: 257 EIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  ++  + ++T F + M  L +   P+V+ L   L+ ++ H+ ++L R+
Sbjct: 317 K-RDVIPEVLLNQLYKSTQLQTNFSVAMLAL-VNNQPKVLNLKEALQIYIDHQFDILLRK 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           ++F ++       I++GL+IA  NID++I II+N    +  K  +++++ L++ Q  AIL
Sbjct: 375 TNFELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTKYELSDLQAKAIL 434

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+ ++ E+   F      
Sbjct: 435 DMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGD---- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALH 544
             RRT  C     +     + +I  E + +  S++G+++ +   +        V +  ++
Sbjct: 491 -ERRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMN 547

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589
             E D ++  +   T   +L  +  GK Y                +PA NL+S     E 
Sbjct: 548 TYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIE-KDEK 606

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  L+ +N   D  + + + ST K LV   K + F    S I  N   GK  +K++  + 
Sbjct: 607 LMSLLSIN---DYDSGYFFFSTKKGLVKRVKASEF----SRIQNN---GKIAIKLTENDS 656

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDG--GISD--- 699
           +  V+K  GD    +G +  LL+ F  D +  M R      GV+ ++  D   G+S    
Sbjct: 657 LFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHE 716

Query: 700 -VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   +CE        G+  +R E      +  RG  G +  K  P++G  +++
Sbjct: 717 GSLLLAVCE-----KGVGKMTDREEY----RMTNRGSKGVITIKVTPKTGNIINT 762


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/599 (40%), Positives = 356/599 (59%), Gaps = 23/599 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +KKSA
Sbjct: 10  VVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE RM
Sbjct: 70  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP HN+
Sbjct: 130 SKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    L LIDNPE +IE+L+  I GPDFPT G+I+ + E I ++Y  GRG  ++RAR 
Sbjct: 190 VEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARA 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++   
Sbjct: 249 HIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++  ++  + ++  F + M  L  G+ P +M L  IL  +++H+  V+ RR+
Sbjct: 309 RRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKQILGHYISHQENVITRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433
            + +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F LTE Q  AIL+
Sbjct: 368 QYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++   K  D  
Sbjct: 428 LRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKDELIEVRD---KYGDER 484

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
           R   TF + S  D   L    I +E + V ++   +I+ +        +   V +  +  
Sbjct: 485 RTEITF-DASEMDITDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
           KE D +   L   T   IL  +  G+ + L A  +  SGR   G AI  L+ +  ++ I
Sbjct: 540 KETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERI 598


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/751 (35%), Positives = 428/751 (56%), Gaps = 50/751 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             VEE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES  + +RI + 
Sbjct: 241 VRVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P +++  ++  + ++T F +N+  +  G  P+V+ L  +++ +L HR+EV+ R
Sbjct: 300 LK-RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKP--VMVSRFSLTENQVDAI 431
           RS F ++  + R  +L+GLLIA  +IDE+IA+IR +ED PK    ++ RF L+E Q  AI
Sbjct: 358 RSLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +  
Sbjct: 418 LDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E    ++    + +IE EP+ + ++ +G+++ L   S          L A 
Sbjct: 476 ---RRTLITEF---EETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             KE D       A   D +LL +  G+ Y L    L  +  +  G  ++ L+ L  +++
Sbjct: 530 RTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEE 589

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV---V 654
           +         D    L+  + +G   +V+ + +      G+   + +  +E  +LV   +
Sbjct: 590 VAALLSVRGLDQEGHLVFATERG---LVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL 646

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLT 710
               D   +  +  + + F ++++    R      GVR +  +D  +S ++  K  E + 
Sbjct: 647 SDPEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVS-LVVVKPGEMVD 705

Query: 711 WIDSAGRSYNR----SENDLLGWLGKRGGVG 737
            +  + R Y +    SE  L G    RGG+G
Sbjct: 706 LLSVSTRGYGKRTPLSEYPLQG----RGGMG 732


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/620 (38%), Positives = 367/620 (59%), Gaps = 30/620 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM E G      FKKSAR V
Sbjct: 12  VDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDKPFKKSARTV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTEAR++ +
Sbjct: 72  GDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARLSPL 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+IP HN++E 
Sbjct: 132 AMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNLREA 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID P+ +   L++ I GPDFPTGGIIV  RE I ++Y  GRG   +RA   +E
Sbjct: 192 IDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGIITIRAHAQIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+      V+    R 
Sbjct: 251 TAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELARG 310

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P++++  ++  + M+  + +    L  G+ P+V+ L  +L+ +L H+++V+ RR+   
Sbjct: 311 ANPNVILNQLYKFTPMQVSYGIIQLALVDGQ-PRVLTLKQLLRHYLDHQKDVIVRRTRHD 369

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  +ID +I +IR     D+ +  ++  F+LTE Q  AIL++RL
Sbjct: 370 LAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQAQAILDMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F        RR
Sbjct: 430 QRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFGDD-----RR 484

Query: 497 TTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
           T       A  A  + + +I +E + + +++RG+I        RS +     ++ +  +E
Sbjct: 485 TKIV----AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRGITGIQTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D +     A T + +L  +  GK Y      +   S    G A+  LI++  ++  VTA
Sbjct: 541 EDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQ-VTA 599

Query: 606 FV----YDSTCKLLVVSSKG 621
            +    +     LL+ + +G
Sbjct: 600 VIPVRDFGEDRDLLMCTRRG 619


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 259/697 (37%), Positives = 398/697 (57%), Gaps = 51/697 (7%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIGKLH 87
           RYL YA+S I+ RA+PD+RDG KPV RRI++ M  E+ L   A  +K A+I G+  G  H
Sbjct: 21  RYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLMADAKTRKCAKISGDTTGNYH 80

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHG+QSVYD+LVRLAQ F  RYPL+ GQGNFG+I G  AAA RYTEAR+T +AE ++  +
Sbjct: 81  PHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAAAERYTEARLTGIAEQLMNEL 140

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
             D V+ R  Y+    EPVV P++FPNLL NGT+GIAVGMAT++P HN++E+ EA + LI
Sbjct: 141 RFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGMATNMPPHNLKEVLEACIHLI 200

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW- 266
            NPE S ++LL++I GPDFP GG ++  R++++  Y  GRG F+VRA W +++  R    
Sbjct: 201 TNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGRGAFKVRAEWRMDKEKRAEVE 260

Query: 267 -CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             +V+  +PY V+   L+ +I  +I ++++P L +  DE+ +   +R+VL  K  S DP+
Sbjct: 261 DRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADETDDKHGLRVVLELKKGS-DPE 319

Query: 324 LLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +M  ++  + +E  F  N  VL     G + P  +PL  +L E+L  R +V+ +R  F+
Sbjct: 320 SVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRLLGEFLKFRLKVVKKRFQFQ 379

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436
           +  +  R+ IL+GL I +  ID+ I IIRN +  +     +++ F L E Q  AIL ++L
Sbjct: 380 LDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKLMAAFPLDEPQTMAILEMQL 439

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             + +LE   + +EL+    E ++I  +L    + WN I  E+RE+ E F       +RR
Sbjct: 440 YRISQLEIDTVLAELNTKQKEADRITRILAKDDRIWNVIEGELRELSEQFGD-----KRR 494

Query: 497 TTFC---EVSRADKATLQQAMIEKEPITVVISNRGWIRSL-KSHSVDLSALHFKEGDSLK 552
           TT     EV+  D++      I +E   VV+S  GWI+ + +  SV+  +   +EGD + 
Sbjct: 495 TTLGSSDEVTEFDES----HYIVRENTNVVLSKDGWIKRVGRLQSVE--STRVREGDQVL 548

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
             L   T D ++  ++DG AYT+P   +    G+GE +           ++ A   D   
Sbjct: 549 DVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHYKFKDGVQVIAAVTTDPRF 608

Query: 610 -------------STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEE---KMKL 652
                        +   L V +++G    V       A+TR G+ F K+   +   K++L
Sbjct: 609 TAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEGDVVAKVEL 668

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
           +V  T   V +V    +L+ FS+++IP +S  GKGVR
Sbjct: 669 IVDQTS--VFLVTREARLIHFSLEEIPVLSGAGKGVR 703


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332200667|gb|EGJ14739.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41317]
          Length = 822

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEELDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + I   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDSSDDAYLFFTTRHG---IVKRTSIKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
 gi|332203068|gb|EGJ17136.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47901]
          Length = 822

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
 gi|332201683|gb|EGJ15753.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47368]
          Length = 822

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/736 (36%), Positives = 408/736 (55%), Gaps = 86/736 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+  D+   +KKSARIV
Sbjct: 11  VSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+E ++ P V P++ P LL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 SHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALID PEI I++L+E+I GPDFPTG  I   R  IVE+Y+ GRG   +RAR  VE
Sbjct: 191 INGCLALIDRPEIEIDELMEFIPGPDFPTGAFI-NGRAGIVEAYKTGRGRIYMRARHHVE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +PD+++ +IF  + +++ F +NM  L  GR P+++ L  IL+ ++ HRREV+ RR+ F
Sbjct: 310 GENPDVVVNNIFTQTQLQSVFGINMVALVDGR-PELLNLKQILECFVRHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPVMV------ 418
            ++    R  IL+GL +A  NID +I +IR                 +P  VM       
Sbjct: 369 ELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMAMLERAG 428

Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+ +Q  AIL+LRL  L  LE  ++ SE  +L+A   ++
Sbjct: 429 ADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLIAVIAEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L +  +    I  E+  V++ F      G  R T    SR D       +I++ P+ 
Sbjct: 489 LEILGNPTRLMEVICEELEAVRDQF------GDERLTEILTSRQDLTIAD--LIDEAPMV 540

Query: 522 VVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS+ G+ +S  L+ +          S+   K+ D +   L   + D ++L S  GK Y
Sbjct: 541 VTISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVY 600

Query: 574 TL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            L               P  NLL     GE I  L+ L  N ++  ++++ +T    V  
Sbjct: 601 WLRVFEIPVASRTAKGRPIVNLLP-LAEGEHISALLPL--NDEMEDSYIFMATANGTVKK 657

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           +    F    S        G   L +   +++  V + +G++ + +V  + K + F    
Sbjct: 658 TAVEYFARPRS-------TGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESD 710

Query: 678 IPEMSRG----KGVRL 689
           +  M R     +G+RL
Sbjct: 711 VRAMGRTAAGVRGIRL 726


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 261/691 (37%), Positives = 391/691 (56%), Gaps = 77/691 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++ +I+I++L+EYI GPDFPT  +I   R+ I+++Y  GRG   +RA+ 
Sbjct: 188 GEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYHTGRGKVYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + + ++    R  IL+GL +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S  +    I  E+  VKE F+       RRT   E++ A      + +I +E
Sbjct: 485 AELMYILSSSDRLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      +A   KE D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615
                K Y LP   L S    G+ I  ++ L  N+ I             FV+ +T    
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGT 653

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKV 644
           V  +    F    S   I  N R+G + + V
Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/605 (40%), Positives = 355/605 (58%), Gaps = 56/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N +++I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKA 246

Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + S   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +NM  L   + P+VM L  IL  +L HRREV+ RR
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+GL +A  NID II +IR+   P   K  +V++            
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E  +LL   
Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E +        RRT   E+S +      + +I  E
Sbjct: 486 AELLHILASPARLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597

Query: 571 KAYTL 575
           K Y L
Sbjct: 598 KVYWL 602


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/631 (38%), Positives = 355/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM E G ++   ++KS
Sbjct: 17  GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD AAA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P + I+ L+  + GPDFPTGGII+  R+ I  +Y LGRG   +R +
Sbjct: 197 LGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   +    I+++EIPYQV K+ ++E+IAEL+  KRI  + D+RDES  D   V+  
Sbjct: 256 VAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRDESDRDGFRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R  V+ RR
Sbjct: 316 LKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFIAFRERVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IR    P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRDWPARDVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  VK  F+       R+T   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQAIIKTELGAVKAEFATP-----RKTVILE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ K      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   + +    G+A+  ++ L   + I T
Sbjct: 607 RLP---MAAPNARGKAMINILPLEQGERITT 634


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/685 (37%), Positives = 374/685 (54%), Gaps = 69/685 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LP      AG+   GR          GE +Q ++ +    D    F       +   S  
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTSLS 660

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS 645
             AF +   +I  N  +G   + V+
Sbjct: 661 EFAFRLARGKIAINLDEGDALIGVA 685


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/525 (42%), Positives = 342/525 (65%), Gaps = 16/525 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+  +
Sbjct: 78  KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 137

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 138 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 197

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 198 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 257

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G   +R
Sbjct: 258 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 316

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ E +RIV
Sbjct: 317 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 376

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K ++++P +L+  ++  ++++  + +N   L  G  P+V+ L   L+ +L H+ EV+
Sbjct: 377 IDVK-KNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVV 434

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429
            RR  F +     R+ IL+GL IA  NIDE+IAII   + + + +  +  RF+LTE Q  
Sbjct: 435 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTK 494

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++  
Sbjct: 495 AIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND- 553

Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL 533
               +RRT   +++   + T+  + +I +  I +  S +G+++ +
Sbjct: 554 ----KRRT---QINYEIQGTITDEDLIPQRDIVITTSAKGFVKRM 591


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +  + C    K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTECEEGVKVFMATANGT 654


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSAD 642


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 261/658 (39%), Positives = 380/658 (57%), Gaps = 65/658 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDILSAFVCHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L IA  NID +I +IR    P   K  +VS            
Sbjct: 365 RTIFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 EQAGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKV 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++ +     RRT   E S AD     + +I +
Sbjct: 485 IAELLFILENPERLMEVIREELLAIKEQYNDA-----RRTELTENS-ADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D ++  L A+T D IL  S  
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNK 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
           GK Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G
Sbjct: 597 GKMYWMKVYQLPEASRGARGRPIVNLLPLGQNERI-TAILPVREYEDGLNIFMATASG 653


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 262/700 (37%), Positives = 409/700 (58%), Gaps = 32/700 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   +++ Y+ YA+S I  RA+PD+RDG KP+HRRI++AMSE+ L      +KS
Sbjct: 7   KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+GK HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF   +++   EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +I+NP+++ ++L+  I GPDFPTGGII+  RE I E Y  GRG   VRA+
Sbjct: 187 LSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIIL-GREGIREMYTTGRGSIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +  G   IVVTEIPY V K+RLIEKIAEL+  K +  + D+RDES  + +RIV+ 
Sbjct: 246 ATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +  +++  ++  + M+  F   M  L   + PQV+ L  ++  +L H++EV+ R
Sbjct: 306 LK-RDANAHVILNQLYKHTQMQVTFGAIMLALVENK-PQVLTLREMIYHYLRHQQEVVVR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAI 431
           R+ + +   + RV IL+GL IA  ++DE+IA+IR ++D P  +  ++  F LTE Q   I
Sbjct: 364 RTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E   LL + +    +L   K  +  I  E+ ++KE F     
Sbjct: 424 LDMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
             RR     EV   D    +Q +I +E + + ++  G++        RS K     ++ +
Sbjct: 482 --RRTRIVAEVKDFD----EQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGI 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
             +E D ++  L A T   +L  +  G  Y L A  +  +GR   G AI  L+ L   Q+
Sbjct: 536 TTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLK-PQE 594

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            V A +    +     L++V+ +G       SE  ++ + G   + ++S +++  V  V 
Sbjct: 595 KVNAVIPIKDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVG 654

Query: 658 GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
                ++G +  + I FS++ +    R  +GV+  +  +G
Sbjct: 655 KKDELILGTSHGMSIRFSVEDVTPTGRTARGVKAITLGEG 694


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  +++D VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ EI++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L +A  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        V   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V++ F  +     RRT   E++        + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELVRDQFGDA-----RRT---EITANTSDINIEDLINR 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGVNVFMATASGT 654


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/602 (40%), Positives = 355/602 (58%), Gaps = 57/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI+NP  +IE+L+EYI GPDFPT  II   R+ I E+YR GRG   +RAR  +E
Sbjct: 191 INGCVALIENPACTIEELIEYIPGPDFPTAAII-SGRKGIEEAYRTGRGKIYLRARAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   I+V E+PYQV K++LIEKIAEL+  KRI  +  +RDES +D +RIV+  K R
Sbjct: 250 REDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +   ++L+  ++  + ++T F +NM  L   + P+V  L   L+ ++ HRREV+ RR+ +
Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNNQ-PKVFNLKDTLECFILHRREVVTRRTVY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  +L+GL IA  NID +I +I+    P                   M+ R  
Sbjct: 368 ELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEMLERAG 427

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LTE Q  AIL+LRL  L  LE  +I SE  +LL    ++
Sbjct: 428 DDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDVIAEL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+  +++ F        RRT   E++ A      + +IE+E + 
Sbjct: 488 LRILGSSERLMEVIREELEAIRDEFGDD-----RRT---EITAASHDIDLEDLIEREDVV 539

Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++  K    +         SA   K+ D ++  L A+T D IL  ST G+ Y
Sbjct: 540 VTLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 574 TL 575
            L
Sbjct: 600 WL 601


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 278/775 (35%), Positives = 435/775 (56%), Gaps = 68/775 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K + +   +++ YL+YA+S I  RA+PD RDG KP  RRI+ AM+++ L   A F+
Sbjct: 5   KENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRAKFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+Q VY +LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT V   I++ +++  VD+   Y++  +EPVV PSKFPNLL NG SGIAVGMATSIP 
Sbjct: 125 ARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATSIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  EIC+    +IDNPE++IE+L+  I GPDFPTG  I  +   I E Y+ GRG   VR
Sbjct: 185 HNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGT-SGIKEGYKTGRGTIIVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  VE    G   IVVTEIPYQ+ +  ++E+IA L+  + +  + D+R+ES      ++
Sbjct: 244 AKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSRLV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D ++++  ++  + ++  F + M  L   R P+ + L  +L  ++ HR+ V+ 
Sbjct: 304 IDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNR-PETLNLKQMLICYIEHRKVVIV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           +R+ F ++    R  +L+GL IA  NID +I +I+  D        ++S FSL+E Q +A
Sbjct: 363 KRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLISTFSLSEIQANA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE+ +I +E + L A+ ++  S+L + K   + I  ++ E+KE F    
Sbjct: 423 ILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSILANEKLVLDIIKKDVAEIKEQFGD-- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
              +RRT   E+  A     ++ +I +E +TV+IS+ G+I+ L        +     +  
Sbjct: 481 ---KRRT---EIVGAVGDLEREDLITEENVTVIISHEGYIKRLPLSAYRKQQRGGKGVIG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
              KEGD  +    A T D IL  +  GK Y L   ++  +     G A+  L++L   +
Sbjct: 535 AEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMGKITKGRALINLLELKEGE 594

Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLV- 653
           + VT+F+    +D   +L++ +S G   I++++ + A  N +KG   + ++ +E   L+ 
Sbjct: 595 N-VTSFIPVRNFDDR-QLVMATSHG---IIKKTVLKAYGNPKKG-GIIAINLDEGDTLIG 648

Query: 654 VKVT-GDHVAVVG-ENRKLLIFS---IDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           VK+T G    ++G E  K + FS   +  +  +SRG KG++L++       D +C     
Sbjct: 649 VKLTNGKQDLILGTEQGKAVRFSEEDVRSVGRVSRGVKGIKLKN------GDKVC----- 697

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGK-----------RGGVGSLVPKGFPRSGKFL 751
           G+  +D         EN      GK           RGG G +  K   R+GK +
Sbjct: 698 GMVVVDDESSLMTICEN----GFGKRTNFEEYSAKNRGGQGVINIKTTERNGKVV 748


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/702 (36%), Positives = 396/702 (56%), Gaps = 46/702 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+ L     ++KSARIV
Sbjct: 12  VDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+YD++VRLAQ F  RYPL+ G GNFGN+DGDSAAA RYTEARM+++
Sbjct: 72  GDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEARMSKL 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDFR  ++E   EP V P+++PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 132 TMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPHNMGEV 191

Query: 200 CEAALALIDN----------PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
             A + +IDN           E   E L+E ++GPDFPTGG I+  R  I ++YR G+G 
Sbjct: 192 IXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQIL-GRYGIEQAYRTGKGK 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA+  +EE+  G   I++TEIPYQV KS+LIEKIAEL+  K++  +  IRDES  D 
Sbjct: 251 VKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDESDRDG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++ ++++  ++  S ++  F +NM  L  G  P V  L  +L+ +L H++
Sbjct: 311 MRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGE-PHVFNLKEMLEAYLDHQK 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAY--LNIDEIIAIIRNED---KPKPVMVSRFSLT 424
           +V+ RR+ F +     R  I++G LI      ID +I +IRN     + K  ++ +  L+
Sbjct: 370 QVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIEKIGLS 429

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AI+++RLR L  LE  ++  E + L  +   + SLL    Q    I  E+  V+E
Sbjct: 430 EIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDKIAYLKSLLEHEDQLLKVIKEELIVVRE 489

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            F+       RR+   E+S  D     + +I++E + V I++ G+I+          K  
Sbjct: 490 KFTDP-----RRS---ELSLLDDEIDIEDLIDEEEVVVTITHFGYIKRXPLVTYKEQKRG 541

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              +  ++  E D ++        D I+  +  G+AY + A  +   S    G AI  L+
Sbjct: 542 GRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKIKAYKIPEASRTARGLAIVNLL 601

Query: 595 DLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEE 648
            LN ++ I   F          L +++ KG   +++++ I A  N +KG    L +   +
Sbjct: 602 HLNVDEKISAVFPVKQNEHERYLTMITKKG---LIKKTNITAFNNIKKGGIIALTMQDAD 658

Query: 649 KMKLVVKVTGDHVAVVGENRKL-LIFSIDQI-PEMSRGKGVR 688
           ++  V + T     ++   + L ++F    I P     KGVR
Sbjct: 659 ELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVR 700


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKLWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/697 (36%), Positives = 408/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++EV+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++S+F  TE Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISKFQFTEVQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  IT  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIVQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI +  ++ I
Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + +V  N   ++F+ + +  M R  +GV+  + +DG
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDG 694


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/648 (37%), Positives = 370/648 (57%), Gaps = 67/648 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V ++S+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM ++G D+ + +
Sbjct: 4   VSKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD SVYD++VRLAQPF  RY LI GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A+ IL+ ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGM T+IP
Sbjct: 124 EIRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A LA I++ +I  E+L++YI GPDFPT  II E +E IV +YR G+G  +V
Sbjct: 184 PHNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQV 243

Query: 253 RARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA   +E   + +   I++ EIPYQ+ K RLIEKI EL+  ++I  + ++RDES +D   
Sbjct: 244 RALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMR 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  + + ++ S++ L+ ++T   +NM  L  G+ P ++ L  I+  ++ +R+E+
Sbjct: 304 VVIELKRESEANFVLNSLYALTRLQTSININMIALLKGK-PTLLNLKKIISSFIDYRKEI 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------- 418
           + +R+ F +    +RV  L+ ++I+  NID II++I+    PK   +             
Sbjct: 363 VIKRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETL 422

Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     S +   E Q   IL+L+L+ L  LE+ ++  E  
Sbjct: 423 IELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYI 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-Q 511
           +L  E   +  +L +  +    I  E+     I+ K+    +RRT   E    D +   Q
Sbjct: 483 SLTKEITSLVQILQNSNRLMEIIKNEL-----IYIKNQYRDKRRTKIIE----DNSKFNQ 533

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRI 563
           + +I+K+ + V++SN+G+I+       D+        S+   KE D +K  L   T + I
Sbjct: 534 EDLIKKKKVIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENI 593

Query: 564 LLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           L +S  G     K Y LP  +  S    G+ I   + L   + I + F
Sbjct: 594 LCVSNFGRIFSIKVYQLPESSRFS---LGKPIVNFLSLKDGEKITSIF 638


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/718 (34%), Positives = 409/718 (56%), Gaps = 55/718 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++++ +   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++AM ++G  +   +KKSA
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  R+PL+ GQGNFG++DGD+ AA RYTE+RM
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++   L  +D+  V+FR  Y+    EP V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL+D+P + +++LL YI GPDFPT  ++   R+ + ++Y  GRG  ++R+R 
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMY-GRQGMRQAYATGRGSIKLRSRL 240

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VEE  +G   IV+TEIP+ + K+ L+EKIA+L+   ++  + D+RDES  + +RIV+  
Sbjct: 241 HVEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDL 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  +L  D+++ +++  + +ET + +N+  +   R PQ++ L  IL+ +L HR+EV+ RR
Sbjct: 301 KRNTLS-DIVINTLYKYTALETSYGINLLAVVNNR-PQLLSLKQILELFLEHRKEVILRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           S + +   ++R  IL+GL IA  NIDE++ +IR    P   K  ++ RF L+E Q  AIL
Sbjct: 359 SRYDLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQRFELSEVQSQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++  E   +L   E + S++   +     +  E++E+++ F+     
Sbjct: 419 DMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
             RRT   E S  ++  ++  +I  E + + ++  G+I+          K     +S  +
Sbjct: 476 --RRTEILE-SDPNEIDIED-LIPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGAN 531

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
             + D +   +       +LL +  G+ + L    +  GR    G  I  L+ L+  + +
Sbjct: 532 VAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYV 591

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESE------------IIANTRKGKTFLKVSSE 647
            T      +D+    L  + KG   +V+ S             I  N R G   + V   
Sbjct: 592 ATVLCMKDFDANHSFLFATKKG---MVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREV 648

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
           ++   +  +T   VA+         F+  ++  M RG    KG+ L+  +D  +S VI
Sbjct: 649 DEESEIFLITHHGVAIR--------FACSEVRSMGRGAAGVKGIALRQ-EDAVVSCVI 697


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 373/612 (60%), Gaps = 40/612 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLN 597
            GE+IQ +I+++
Sbjct: 591 EGESIQTIINVD 602


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  NPEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 412/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA ID+ +ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 KEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGEDSVVSLIIPRG 740


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/711 (36%), Positives = 411/711 (57%), Gaps = 55/711 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  +   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKYED- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I++   +    A+++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGESIQTIINIESERSD-DAYIFFTTRAGIVKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
             E+++  V+    D   ++G      + F+   +  MSR     KGV L+
Sbjct: 642 KDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMSRSATGVKGVNLR 692


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 261/699 (37%), Positives = 397/699 (56%), Gaps = 61/699 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 24  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 83

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 84  GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 144 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 203

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 204 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 263 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLIHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT 635
           L GR   G+AI  ++ +     I      D       +L VV      F   E ++  N 
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVV------FATSEGDVRRNR 666

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
               T +K + +  MKL   V+  +V++  E   +++ +
Sbjct: 667 LSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVT 705


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/759 (34%), Positives = 415/759 (54%), Gaps = 35/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   QRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ V++   +++   EP V PS  PNLL NG SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +   ALIDNP+I IE+L++++I PDFPTGGII    E +  +Y  GRG   +RA
Sbjct: 184 NLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIY-GYEGVRLAYTTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + G   IVVTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQFYIQHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I  IR   + +  +  ++ RF L+E Q  A
Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    +A  E++  +L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASPERQMQIIRTELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +++G+ Y L    +  +GR   G ++  +++LN  +
Sbjct: 534 AQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAARGRSLANIMELNPGE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T      +D    +++ ++ G        E     R G   + + + + +       
Sbjct: 594 TIKTYINIRNFDEPGFIMMATADGIVKKTALEEFSRPRRNGIAAITIDTGDALLDARLTD 653

Query: 658 GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI 712
           GDH  ++ ++  L++ F   Q+  M R     KG+ L    +  IS V   ++   L  +
Sbjct: 654 GDHQVILAKSSGLVVRFPESQVRPMGRTAMGVKGITLDR-GEKCISMVTTKRLDTALLAV 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              G        D    L KRG  G +  K   + G  +
Sbjct: 713 TDNGFGKRSKVEDY--RLTKRGARGVITLKAHEKIGALV 749


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 266/771 (34%), Positives = 431/771 (55%), Gaps = 62/771 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++ MS++GL F   FKKSARIV
Sbjct: 11  INIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKPFKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD++VR+AQP+  RYPL+ GQGNFG+IDGDS AA RYTEAR+ +V
Sbjct: 71  GEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLKRV 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +++D +DF+  ++E   EP V P K P+LL NGTSGIAVGMAT++P HN+ E+
Sbjct: 131 ADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNMPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A +DN +I++E+L++YI  PDFPTGGII    + + ++   GRG   +R    +E
Sbjct: 191 VDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIY-GYQGVKKAMLTGRGRVVIRGVAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPY V K+ LIEK A L+  KRI  + DIRDES      +++   R 
Sbjct: 250 TTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRIVYELKRD 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P + +  ++  + +++ F +N   L  GR P+++ L  ++  ++ HR EV++RR+ F 
Sbjct: 310 AVPMVTLNQLYKYTALQSSFGVNNVALVKGR-PEILNLRDMIYHFVEHRHEVIYRRTQFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++    R  IL+GLLIA  NIDE+I +IR   + +  K  ++ +F L+E Q  AIL++RL
Sbjct: 369 LKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEKFELSEIQAKAILDIRL 428

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  +E  +I +E   +    ++++++L     + + I  E+ E+K+ +  +     RR
Sbjct: 429 QRLTAMERDKIVAEHKQISELIKELEAILADKLLRVDIIKEELTEMKDRYGDA-----RR 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548
           T    +  AD  T  + MI  E + + IS+ G+I        R+     V       K+ 
Sbjct: 484 TDIEHM--ADDLT-DEDMIPVEEMVITISHFGYIKRTSLDEYRTQNRGGVGSRGTSKKDD 540

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D  +    A T D +L+ +  GK + +   N+  ++    G AIQ L+ +    D + A 
Sbjct: 541 DFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVAKTAKGRAIQNLLQMEKG-DSIRAV 599

Query: 607 V---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVV 654
           +         Y+    L++ + KG   I++++ + A +R    G   + ++ ++++ L V
Sbjct: 600 INVKQLQDPDYNQNHYLVMCTEKG---IIKKTRLEAFSRPRQNGIHAITINEDDQL-LDV 655

Query: 655 KVTGDHVAVVGENRKLLI--------FSIDQIPEMSRG----KGVRLQSYKDGGISDVIC 702
           K+T       GEN  +L         F  DQ+  M R     +G+ L    D  +  ++C
Sbjct: 656 KLTN------GENNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITLDG-DDNRVVGMVC 708

Query: 703 FKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  L  +   G     S  D    +  RGG G +  +   ++G+ ++
Sbjct: 709 VARDDASLLVVSETGYGKRSSIEDY--RITNRGGKGVITMQITDKTGRLVA 757


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 378/695 (54%), Gaps = 61/695 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+      L   +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E
Sbjct: 5   DDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYE 64

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 65  NGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDG 124

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GI
Sbjct: 125 DMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALID+P ++I+ L + + GPDFPTGGII+  R  I  +Y
Sbjct: 185 AVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIIL-GRSGIRSAY 243

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RD
Sbjct: 244 QTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRD 303

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   V+    R   P++++  ++  + ++T F  NM  L  GR PQ+M L  +L  
Sbjct: 304 ESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTV 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------- 414
           ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P          
Sbjct: 363 FVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSR 422

Query: 415 -------PVMVS-----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNL 454
                    M++     R  L E+        Q  AIL+LRL+ L  L   +I  ELD L
Sbjct: 423 DWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDKL 482

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E      +L S  +    +  E+  VK  F+       R+T   E    +     + +
Sbjct: 483 AVEIADYLEILRSRARVQTIVKDELGAVKAEFATP-----RKTVIVE---QEGEVEDEDL 534

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G++        R+ +      S +  +E D +     A T   +L  
Sbjct: 535 IQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFF 594

Query: 567 STDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLL 615
           S+ G+ Y      LP   L    G G+A+  ++ L   + I T           S   ++
Sbjct: 595 SSRGQVYKEKVWRLP---LAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVM 651

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             ++ GN    + S+ +   R G   +K+   E +
Sbjct: 652 FATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAI 686


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 275/736 (37%), Positives = 403/736 (54%), Gaps = 86/736 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I+N +I+IE+L+ +I GPDFPT  +I   R+ I ++YR GRG   +R++ 
Sbjct: 188 TEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMI-NGRKGIEDAYRTGRGKIYLRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   IVVTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  
Sbjct: 247 DIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++ +++  + ++T F +NM  L   + P++  L  +LK ++ HRREV+ RR
Sbjct: 307 K-RDAVAEVILNNLYAQTQLQTSFGINMVALDNNQ-PRLFNLKDMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F ++    R  IL+GL IA  NIDEII +IRN   P                      
Sbjct: 365 TIFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLE 424

Query: 414 -------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                  +P        V   ++ LTE Q  AIL+LRL  L  LE  +I  E   LL   
Sbjct: 425 ATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 GELMFILSSPERLMEVIREELEAVRDGFGDE-----RRT---EITAASADIDIEDLINQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615
                K Y LP   L S    G+ I  L+ L  ++ I             FV+ +T    
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNLLPLEQDERITAILPVKEYEDDKFVFMATSDGT 653

Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           V  +    F    S   I  N R+G + + V         +    + V +  ++ K++ F
Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGVD--------ITWGDNDVMLFSKSGKVVRF 705

Query: 674 SIDQIPEMSR-GKGVR 688
              Q+  M R   GVR
Sbjct: 706 HESQVRAMGRTAAGVR 721


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 382/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L  + RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEASRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/751 (35%), Positives = 428/751 (56%), Gaps = 50/751 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             VEE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES  + +RI + 
Sbjct: 241 VRVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P +++  ++  + ++T F +N+  +  G  P+V+ L  +++ +L HR+EV+ R
Sbjct: 300 LK-RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKP--VMVSRFSLTENQVDAI 431
           RS F ++  + R  +L+GLLIA  +IDE+IA+IR +ED PK    ++ RF L+E Q  AI
Sbjct: 358 RSLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +  
Sbjct: 418 LDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E    ++    + +IE EP+ + ++ +G+++ L   S          L A 
Sbjct: 476 ---RRTLITEF---EETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             KE D       A   D +LL +  G+ Y L    L  +  +  G  ++ L+ L  +++
Sbjct: 530 RTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEE 589

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV---V 654
           +         D    L+  + +G   +V+ + +      G+   + +  +E  +LV   +
Sbjct: 590 VAALLSVRGLDQEGYLVFATERG---LVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL 646

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLT 710
               D   +  +  + + F ++++    R      GVR +  +D  +S ++  K  E + 
Sbjct: 647 SDPEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVS-LVVVKPGEMVD 705

Query: 711 WIDSAGRSYNR----SENDLLGWLGKRGGVG 737
            +  + R Y +    SE  L G    RGG+G
Sbjct: 706 LLSVSTRGYGKRTPLSEYPLQG----RGGMG 732


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/633 (38%), Positives = 368/633 (58%), Gaps = 63/633 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+  ++KKSARIV
Sbjct: 11  INLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+ AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF D Y+  +SEP VFP++ P LL NG SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPHNINEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +ALID PE+ +  L+E+I GPDFPT GII  +R  I E+YR GRG   +RAR  VE
Sbjct: 191 IDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGAR-GIREAYRTGRGRIYMRARASVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E   G   IVVTEIPYQV K+RL+EKIAEL+  K+I  +  +RDES +D   ++    R 
Sbjct: 250 EDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVIELRRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ++T F +NM  L  G+ P++M L  +L+ ++AHRREV+ RR+ + 
Sbjct: 310 EVGEVILNNLYAQTQLQTVFGINMVALDKGQ-PRLMNLKQVLEAFIAHRREVVTRRTLYE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVS-------- 419
           ++    R  IL+GL +A  NID IIA+I+    P            +P +VS        
Sbjct: 369 LRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGMLERAGA 428

Query: 420 -----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+  Q  AIL+L+L  L  LE+ +I  E   LL +  ++ 
Sbjct: 429 DATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEKIAELL 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L +  +    +  E+ E+++ +        RRT   E+ +       + +I ++ + V
Sbjct: 489 NILRNPDRLTEVVRDELVELRDSYGDE-----RRT---EIYQNQSDLTVEDLINEQDVVV 540

Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
            +S+ G+         ++ K      SA   K+ D ++    A T D +L  S+ G    
Sbjct: 541 TLSHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYW 600

Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            K Y LP G   S    G+ I  L+ L   + I
Sbjct: 601 KKVYELPIG---SRNARGKPIVNLLPLEEGERI 630


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSAD 642


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 416/713 (58%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                ++ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
             E+IQ +I++  ++    A+++ +T  +L+  +    F        AN R+ G   L +
Sbjct: 591 EDESIQTVINVESDRSD-DAYLFFTTRHVLLKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 642 KDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|169830227|ref|YP_001716209.1| DNA gyrase subunit A [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/691 (37%), Positives = 402/691 (58%), Gaps = 35/691 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      +KSA +VGEV+ K
Sbjct: 17  LKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKSAYVVGEVLSK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
           LHPHGD +VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 77  LHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVRMARITSQMLA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+    EPVV PS+ PNLL NG++GIAVGMAT+IP HN++E+ +  + 
Sbjct: 137 DIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHNLKEVIDGLVY 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L D+P+  +E L+ +I GPDFPTGG I+  R  IVE+YR GRG  ++R     E VG  +
Sbjct: 197 LADHPDAELEDLMRFIPGPDFPTGGKIM-GRHGIVEAYRTGRGSIKMRGHAEFERVGSRT 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TE+PYQV K+RL+EKIA L+  K+I  + D+RDES      V+    R ++P++ 
Sbjct: 256 R-IVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIELRREVNPEIT 314

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + +  L  G+ PQV+ L  IL  +L H+REV+ RR  + +     
Sbjct: 315 LNLLYKHTQLQDNFGVILLALVDGQ-PQVLALKDILSHYLGHQREVITRRCRYELSQAQA 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL IA  ++DE+I  IR      + +  +++ F L+E Q  AIL++RL+ L  L
Sbjct: 374 RLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMAGFGLSEKQAQAILDMRLQRLTAL 433

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E ++L+A  E++++LL   ++    +  E+  V++ F+       RRT   E+
Sbjct: 434 ERDKLENEFNDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADP-----RRT---EL 485

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
              D     + +I +E   ++++N G+I        RS +     ++ +  K  D ++  
Sbjct: 486 VAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVETKVQDFVRHL 545

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV----Y 608
               T D +L  +  GK Y +    +  +GR   G A+  LI +  N + VTA +    Y
Sbjct: 546 FVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVA-NGERVTAVIPVTEY 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGE 666
                L +V+ KG        E  +  R G   + ++ +E  +LV VK+T G    ++G 
Sbjct: 605 SGDAFLFMVTRKGIVKKTVLQEFDSARRDG--LIALTLDEGDELVDVKITDGKSEVLLGT 662

Query: 667 NRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
              ++I F   Q+  M R   GVR  S ++G
Sbjct: 663 RNGMVIRFPEGQVRPMGRTAHGVRGISLREG 693



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           L AL   EGD L           +LL + +G     P G +  +    HG      I L 
Sbjct: 635 LIALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPMGRTAHGVR---GISLR 691

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               +V   + D   +LLVVS KG   +    E    +R G   +      +   +V ++
Sbjct: 692 EGDMVVGMDIVDPDDQLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVSLS 751

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
               G+ + +V ++  L+   ID+IP+  R  +GVRL     G
Sbjct: 752 LVGRGEEILIVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPG 794


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIASFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/605 (40%), Positives = 366/605 (60%), Gaps = 62/605 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 AHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNLTEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALIDNP+++I+ L+E+I GPDFPT GII   R  IVE+YR GRG   +RAR  +E
Sbjct: 191 VNGCLALIDNPDMTIDDLMEHIPGPDFPTQGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              + +   I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES  E +R+V+  + 
Sbjct: 250 HDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +PD+++ ++F  + ++T F +NM  L  G  P+++ L  +L  ++ HRREV+ RR+ 
Sbjct: 309 RGENPDVVINNLFAHTQLQTVFGINMVALINGE-PKILNLKEMLDAFVRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408
           + ++    R  IL+GL +A  NIDEIIA+I+                             
Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLAMLERA 427

Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            ED  +P        +    + L+  Q  AIL+LRL  L  LE  ++++E  ++L   EK
Sbjct: 428 GEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDIL---EK 484

Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           I  LL       +  Q+   IRE  E+ +  ++ G  R T  E++ + +      +I++E
Sbjct: 485 IADLLEILGDPDRLMQV---IRE--ELEAVVSEFGDNRLT--EITSSKRDLTIADLIDEE 537

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+ ++                +A   K+ D ++  L A++ D IL  S  G
Sbjct: 538 DLVVTISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRG 597

Query: 571 KAYTL 575
           K Y L
Sbjct: 598 KVYWL 602


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCK 613
             S+ G     K + LP G   S    G+A+  ++ L   + I T         + +   
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLD 655

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           ++  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/560 (40%), Positives = 349/560 (62%), Gaps = 22/560 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RIV+  + R +   +
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVR-RDVSASV 298

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+ RR+ F     +
Sbjct: 299 ILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAE 357

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  +IDEIIA+IR   ++D+ K  M+ RF L++ Q  AIL++RLR L  
Sbjct: 358 ARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTG 417

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+SE   LL     +  +L + ++    I  E++E+ + F        RRT    
Sbjct: 418 LERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD-----RRTELLV 472

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
                         E+  IT  ++N G+I        R+ +     +  +   + D +K 
Sbjct: 473 GEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKT 530

Query: 554 ALHAHTTDRILLLSTDGKAY 573
            +   T D +L  +  GK Y
Sbjct: 531 LVSCSTHDTLLFFTNKGKVY 550


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 411/695 (59%), Gaps = 30/695 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H+++V+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLLDMLNYYIEHQKDVIVRRTKY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++ RF  TE Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFGFTEVQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  LL   E   ++L +       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELLKMIEYYKNVLANEAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT    +    +   ++ +I+++   + +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKI--IQDEQEDFEEEELIQEQDTVITLTHFGYIKRLPLDTYKSQKRGGKGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++      T   IL  +  GKAY L A  +   S +  G AI  LI +  ++ I   
Sbjct: 541 EDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPEASRQAKGTAIVNLIQIGKDEKITAC 600

Query: 606 F-VYDSTCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHV 661
             V D     L++ +K G    V  SE    T+ GK  + ++ ++ + + VK+T   D +
Sbjct: 601 MTVKDFKEGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCL-IDVKLTSGNDEM 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            +V      ++F+ + +  M R  +GV+  + +DG
Sbjct: 660 VLVSSGGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L              +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRCV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 373/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++MPL  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  N+D II +IR+   P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G +R T    + AD     + +I +
Sbjct: 485 IAELIRILESSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERIT 632


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 362/604 (59%), Gaps = 25/604 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR ++AM E G     A+KKSA
Sbjct: 14  VIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKSA 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R V   +GK HPHGD S+YD+LV++AQPF  R PL+ GQGNFG+IDGDSAAA RYTEAR+
Sbjct: 74  RAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEARL 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ AE +L  +D+  VDF   ++    EP V PSK PNLL NGTSGIAVGMAT++P HN+
Sbjct: 134 TRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHNL 193

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C A    I NP+ ++E L++ + GPDFPTGG+I  + E IV +Y  G G   VR   
Sbjct: 194 REVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGT-EGIVSAYHTGYGKLTVRGVA 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+V   +  I+++EIPYQV K+R++E IA L+  K+I  + D+RDES  D   V+   
Sbjct: 253 EIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVDL 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            + + P +++  ++  + +E+ F + +N+      P+V+ L  I+ E+L HR  V+ RR 
Sbjct: 313 KKGVIPTVVLNQLYKHTPLESTFGI-INLAISDNQPKVLGLKAIISEFLHHRATVVRRRC 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F ++    R+ IL GLL+A   IDE+IA IR   + +  +  +++ F LTE Q  AIL 
Sbjct: 372 EFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIATFGLTEPQTVAILQ 431

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE+ +I+ E D+L     +++ +L+     + +I  EI +V E +       
Sbjct: 432 MQLRRLAALEQAKIRDERDSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGDD---- 487

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
            RRT   E++ +     ++ +IE +P+ + I+ + +I+ L   +  +          +  
Sbjct: 488 -RRT---EITCSQTILEREDLIEDKPVLISITTQNYIKRLPLETYRMQRRGGRGVIGMAT 543

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+ DS++    A   D +L  +TDG+ Y L   N+   S    G+AI  L++L    +++
Sbjct: 544 KDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKGKAIVNLLEL--QDELI 601

Query: 604 TAFV 607
           TA +
Sbjct: 602 TAVI 605


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/725 (36%), Positives = 384/725 (52%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKAEVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   +VVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME  F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/772 (36%), Positives = 445/772 (57%), Gaps = 43/772 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N+N   E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+
Sbjct: 2   NYMNNN---EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYEL 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL    +++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD
Sbjct: 59  GLSPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGD 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++   +L+ ++++ VDF   ++  + EP V PS+FPNLL NG+SGIA
Sbjct: 119 SAAAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +    LI++P+ +I +L+  I GPDFPT GII+  +  I  +Y 
Sbjct: 179 VGMATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIM-GKSGIRSAYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +EE  +G + I+VTE+PYQV K++LIE +AEL+  KRI  + DIRDE
Sbjct: 238 TGRGKVIMRAKAEIEE-EKGRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDE 296

Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  E +RIV+  K R  +P++++  ++  + M+  F + M  L +   P+V+ L  IL  
Sbjct: 297 SDREGMRIVVEIK-RDSNPNVVLNQLYKHTKMQDTFGVIMIAL-VDNEPKVLNLKEILVN 354

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
           ++  ++E++ RR+ F +     R  IL+GL IA  +IDE+I++IR   N D+ +  ++++
Sbjct: 355 YIEFQKEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK 414

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTE Q  AIL++RL+ L  LE  +I+ E + L+   + +  +LN+       I  E+ 
Sbjct: 415 FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELH 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539
           E+K  +      G  R T  E++  + +   + +IE+E + V ++N G+I+ + S +   
Sbjct: 475 EIKNKY------GDERKTEIELNINEISI--EDLIEEEEVVVTLTNSGYIKRISSDAYSS 526

Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590
                  + A+  KE D ++      T   +L  +  GK Y L A  +  +GR   G  I
Sbjct: 527 QKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNI 586

Query: 591 QLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSE 647
             L+ ++ N+ +  V A   D     L++ +K             N RK G   + +  E
Sbjct: 587 VNLLPVDANEHVREVIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDE 646

Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVIC 702
           +++ L VKVT GD  + +V +N   + FS   +  M R   GV+  S +  D  +S  I 
Sbjct: 647 DEL-LKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVAVSMDIV 705

Query: 703 FKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    LT  ++  G+    SE      L  R G G +  +   ++GK +S+
Sbjct: 706 VEDEYVLTVTENGFGKRTLASEY----TLQNRNGKGLITHRVTDKTGKIVSA 753


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           +++I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/683 (36%), Positives = 371/683 (54%), Gaps = 61/683 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 16  DIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 76  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  ++ I  +Y LGRG   +R +
Sbjct: 196 LGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIIL-GKQGIRSAYHLGRGSIVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 255 VSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDLRDESDRDGYRVVVE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR PQVM L  +L  ++A R  V+ RR
Sbjct: 315 LKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGR-PQVMNLKDLLTVFVAFRENVVSRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL IA  NIDEII +IR    P   +  ++SR            
Sbjct: 374 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMSRDWPAKDVETMMM 433

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 434 LIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDKLAVEIADYLDILR 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  VK  F+       RRT   +    +     + +I++E + V +S+
Sbjct: 494 SRARVQGIVRDELTAVKNEFATP-----RRTVIVD---QEGEVEDEDLIQREDMVVTVSH 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ K      S +  ++ D +     A T   +L  S+ G+ Y     
Sbjct: 546 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 605

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627
            LP   + +    G+A+  ++ +   + I T           S   ++  ++ GN    +
Sbjct: 606 RLP---MAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRRNK 662

Query: 628 ESEIIANTRKGKTFLKVSSEEKM 650
            S+ +   R G   +K+   E +
Sbjct: 663 LSDFVDVRRSGIIAMKLDEGESI 685


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 409/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTTIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++EV+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTRY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL++R
Sbjct: 368 DLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  IT  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI +  ++ I
Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + +V  N   ++F+ + +  M R  +GV+  + +DG
Sbjct: 658 EIVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 274/759 (36%), Positives = 416/759 (54%), Gaps = 40/759 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +  A KKSAR+V
Sbjct: 5   VTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R PL++GQGNFG+IDGDSAAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +  +D++ V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 ASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  +D+PE ++  L   + GPDFPTGG     R  + ++Y  GRG  ++R R  VE
Sbjct: 185 VDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGR-GLRDAYETGRGTVKIRGRVEVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   IV+ EIPY + KS L+EKIA L   +RI  + D+RDES    +R+V+  K R
Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLK-R 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + +ET F +NM +  +G  PQ++ L  + + +L HRREV+ RR+ +
Sbjct: 303 GTIPEIVINQLYKYTPLETSFGINM-LAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHY 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR    P   K  ++ RFSL+E Q  AIL++R
Sbjct: 362 DLRKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQRFSLSEVQAQAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E   S+L + +     I  E++E+KE ++       R
Sbjct: 422 LQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVLRGVIRDELKELKETYATP-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
           RT   E    +   ++  +I  E + + +S RG+I+     S          ++ +H  +
Sbjct: 477 RTEMLE-DELEGIDIED-LIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
           GD ++  L       +LL +  G+ + L    +  G     G  I  L+ +  N+ + TA
Sbjct: 535 GDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTA 594

Query: 606 FVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVA 662
                    K  + S++        + + A  R+    + V   E  +L+ V+   D+  
Sbjct: 595 LTIREFTEEKYFLFSTRKGMVKRSSASLYAKARR-TGLIAVGLREGDELIMVREVDDNCE 653

Query: 663 VVGENRK--LLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           VV    K   + F    +  M R     KG+ L S  D   S V C  +  GL       
Sbjct: 654 VVLTTEKGIAIRFGCGDVRPMGRSATGVKGIAL-SQDD---SVVACVTVQGGLESEIMTV 709

Query: 717 RSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y   +  L+    +  RGG G +  K  P++G+ L +
Sbjct: 710 SRYGYGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGA 748


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 384/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A++   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPGATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|220903292|ref|YP_002478604.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/751 (35%), Positives = 418/751 (55%), Gaps = 39/751 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E     +S+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+  ++   
Sbjct: 1   MAEMQQPQISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+ AA RY
Sbjct: 61  HKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM+++A+  L  +D++ VDFR  Y+    EP V PSK PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   L+D+P+ SI+ L+E++ GPDFPT G +   +  + ++Y  GRG  +
Sbjct: 181 PPHNLGELCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGK-GLYDAYHTGRGTVK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VR R  +E+  + +  IV+ EIPY + KS L+EKIA L+  ++I  + D+RDES    +R
Sbjct: 240 VRGRMEIEDRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P++++ +++  + +E+ F +NM  +   R PQ++ L   L  ++ HRRE
Sbjct: 300 VVIDLK-RGTIPEIVINALYKFTPLESSFGINMLAVVDNR-PQLLNLKSALTCFVDHRRE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL +A  NIDE++A+IR   + D+ +  ++ RF L+E Q
Sbjct: 358 VVIRRTRYDLEKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKRFELSELQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  L+  ++ +E  +LL + E   S+L + +    ++  EIRE++E F+
Sbjct: 418 AKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLRGELKREIREIRETFA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT     +  D     + +I  E + + +S RG+++          K     
Sbjct: 478 TP-----RRTEVLREALTDIDI--EDLIPDEDVVITLSRRGYMKRTGLENYQQQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           ++AL+  + D ++  L       + L +  G+ + L    +  G     G  I  L+ L 
Sbjct: 531 IAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLE 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV 653
             + + T      +      L V+ +G   +V+ S      R  KT  + V   E  +LV
Sbjct: 591 DGEWVTTVLALREFAEDKYFLFVTKRG---MVKRSSASLYARCRKTGLMAVGLREDDELV 647

Query: 654 V--KVTGD-HVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKIC 706
           V   +  D H+ +   +   + FS   +  M R     KG+ L+  +D  ++ VI  +  
Sbjct: 648 VVRPIRNDSHIVLATADGIAIRFSCKDVRPMGRVATGVKGIALRR-QDFVVAGVIVKETD 706

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +    +  +   + +  +  L  L  RGG G
Sbjct: 707 QTTEIMSISANGFGKRTSIELYRLQSRGGKG 737


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/736 (35%), Positives = 419/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+  K+    +  E+ E+++ +       +R++   E SR D    
Sbjct: 479 FKELIDRIKYLISILSDIKELICVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/669 (38%), Positives = 386/669 (57%), Gaps = 74/669 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  ++++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+D+PEI ++++++ I GPDFPT  II   R  I++ YR G+G   +RAR 
Sbjct: 188 TEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAII-NGRAGIIQGYRTGKGRAIIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
            +E +   G   I++TE+PYQV K+RL+E+IAEL+  K+I  +  +RDES  + +R+V+ 
Sbjct: 247 EIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  D+++ +++  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ R
Sbjct: 307 LKRQEI-ADVILNNLYTQTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                  M+
Sbjct: 365 RTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + L+E Q  AIL LRL  L  LE+ +I  E + LL  
Sbjct: 425 ERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E  E+K  F        RRT   E S+ D     + +I +
Sbjct: 485 IRELLEILASPERLMQVIRDEFVEIKTQFGDE-----RRTEIIE-SQEDLTI--EDLITE 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA + K+ D +   + A T D +L  S  
Sbjct: 537 ENVVVTLSHQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNH 596

Query: 570 G-----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           G     KAY LP  + +S GR          GE I  ++ +    D    +V+ +T K  
Sbjct: 597 GKLYWLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLD--GYYVFMATKKGT 654

Query: 616 VVSSKGNAF 624
           V     NAF
Sbjct: 655 VKKVPLNAF 663


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/693 (35%), Positives = 409/693 (59%), Gaps = 45/693 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ + +    KKSA
Sbjct: 15  IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  AA RYTEA+M
Sbjct: 75  RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +A+  NPEI+  +L++ I GPDFPTG +I  +   ++++Y  G G   +R++ 
Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALIT-AGNGLIKAYETGNGAITIRSKI 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            +EE       I+V+EIPYQ+ K++L+E+IAEL+  K I  + D+RDES  E VR+VL  
Sbjct: 254 DIEE-NNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVLEL 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    ++++  ++ L+ ++T F LN+  L   + P+VM L  ILK ++ H+ +++ +R
Sbjct: 313 K-RDAQENVILNKLYKLTPLQTNFSLNILALYKNQ-PRVMGLKQILKYFIEHQIDIIIKR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432
           S F ++    R+ IL+GL IA  NIDE+IAII+     +     ++++F+L   Q  AIL
Sbjct: 371 SQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINKFNLVGEQARAIL 430

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I +E+ ++     +++ ++N+ ++Q + +  E+ E+K+   K  D 
Sbjct: 431 EMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSEKQIDIMITELTEIKK---KYGDE 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG---- 548
            R +    E++  D     + +I +E   ++++  G+++ +   S D   L  + G    
Sbjct: 488 RRSQIIKEELTEID----PEELIRREDTLIMLTQDGYVKRV---SDDTFKLQNRGGKGII 540

Query: 549 ------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ 600
                 DSLK  + A++ D +L+ S  GK Y L A N+ +   H   + +  LI ++  +
Sbjct: 541 GLANIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIAIDKTE 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR---------KGKTFLKVSSEEKMK 651
            I T    D +     +S++ N F V +  +I  T+          GK  +++   +++ 
Sbjct: 601 SIQTIIAVDES-----ISTEDNLFFVTKKGLIKKTKISEFNQIRQTGKVAIELKDNDELV 655

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR 683
            V+   G    ++G N  K++ F+  +I  M+R
Sbjct: 656 SVIITKGYDDVIIGNNIGKVIRFNEKEIRPMTR 688


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/747 (35%), Positives = 426/747 (57%), Gaps = 46/747 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++E+ + +V +   ++E YL Y+LS I  RA+PD+RDG KPVHRRI++A  ++GL     
Sbjct: 1   MIEQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYD++VR+AQ F QRY LI G GNFG+IDGDSAAA RY
Sbjct: 61  HKKSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  ++E +L  ++++ ++F D ++    EP V PS+ PNLL NG+SGIAVGM+T I
Sbjct: 121 TEARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+++ +++IE L+EYI GPDFPTGG I+ + E I ++YR G+G   
Sbjct: 181 PPHNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDE-IKKAYRTGKGRIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +R +  +E+  R    IV+TEIPYQ+ K++LIE+IA  I   ++  + ++RDES +D +R
Sbjct: 240 LRGKTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K+++ + ++++  ++  + ++T   +NM  L + + P+VM L  IL+ +L  RRE
Sbjct: 300 IVIELKSKA-NTEIILNRLYKYTSLQTTQRINMLAL-VDQQPEVMDLKTILQHFLDFRRE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F +Q    R  IL GL  A  N+D++I+IIRN  KP   K  +  + ++++ Q
Sbjct: 358 VVTRRTEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDKLNVSKKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I  EL  L  + E ++S+LN  +   + I  E+ E+KE + 
Sbjct: 418 AAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILNEKEVMDDLIKKELIEIKEEY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                G  R T   ++   KA L ++ +I+ E I +  S   +++     + D+  +   
Sbjct: 477 -----GDERKTEI-ITDESKAELDESDLIKNEDIVLSFSYNKYLK----RTTDIENIRAG 526

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVT 604
           +GD +   +   T D +L  +  G+ + L    +    G   G+ +   + L  +++IV 
Sbjct: 527 KGDYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDEEIVD 586

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------EEKMKLVVKVT 657
             +     K   ++      I  E  +I  T   +    VSS       EE   +  KVT
Sbjct: 587 ILILTDETKEKYIT------IATEEGLIKKTVGKEYETTVSSIKAINLNEEDEVIGAKVT 640

Query: 658 -GDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTW 711
            G    ++G +  + + FS D I +  R     KG+ L          VI F +     +
Sbjct: 641 DGQQNLLLGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAEN-----DKVISFNLTANSNY 695

Query: 712 IDSAGRSYNRSENDLLGW-LGKRGGVG 737
           + +A      +  D+  + +  R G G
Sbjct: 696 VITATADGRATRTDINAYQIQNRNGKG 722


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/606 (41%), Positives = 359/606 (59%), Gaps = 58/606 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N  ++I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE   + S   I+V E+PYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + ++T F +NM  L   + P+VM L  IL  +L HRREV+ R
Sbjct: 307 IK-RGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL +A  NID II +IR+ D P   K  +V+R           
Sbjct: 365 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I  E  +LL  
Sbjct: 425 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+E +        RRT   E+S +      + +I  
Sbjct: 485 IAELLFILASPERLMEVIRDELLAVREQYGDE-----RRT---EISASSAEINIEDLITP 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 537 EDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTR 596

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 597 GKVYWL 602


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    + ++L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLANILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332278618|ref|ZP_08391031.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|332754876|gb|EGJ85241.1| DNA gyrase, A subunit [Shigella flexneri 4343-70]
 gi|332756160|gb|EGJ86511.1| DNA gyrase, A subunit [Shigella flexneri 2747-71]
 gi|332766049|gb|EGJ96259.1| DNA gyrase, A subunit [Shigella flexneri 2930-71]
 gi|333001373|gb|EGK20941.1| DNA gyrase, A subunit [Shigella flexneri VA-6]
 gi|333002596|gb|EGK22156.1| DNA gyrase, A subunit [Shigella flexneri K-272]
 gi|333016644|gb|EGK35973.1| DNA gyrase, A subunit [Shigella flexneri K-304]
 gi|333016790|gb|EGK36117.1| DNA gyrase, A subunit [Shigella flexneri K-227]
          Length = 875

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 248/616 (40%), Positives = 382/616 (62%), Gaps = 36/616 (5%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI N N    +++K V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM++
Sbjct: 3   ENILNLN----QDIKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDG
Sbjct: 59  LGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGI
Sbjct: 119 DSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSSGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P H++ E+ +  L L+DN   S+E++++YI GPDFPTGGII   ++ I+E+Y
Sbjct: 179 AVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIF-GKKGIMEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  +VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RD
Sbjct: 238 RTGRGRVKVRAKTHIEK-KPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRD 296

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K  ++  D+++ ++F  + ME+ F + M  +   + P++  L  +LK
Sbjct: 297 ESDREGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAID-NKEPKIFTLIELLK 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVS 419
            +L HR+ V+ R++ F ++    R  IL+GL IA  NIDE+I +IR + D P  +  ++ 
Sbjct: 355 LFLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLME 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL++RL  L  LE  ++ +EL  LLAE  ++D +L S     N I  E+
Sbjct: 415 KFGLSELQSNAILDMRLSKLTGLEREKLDNELKELLAEISRLDEILKSETLLENLIKDEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+K  F        +     E+         + +I  E + V I++RG+I+ + S   +
Sbjct: 475 LEIKSKF--------KVPRLTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 526

Query: 540 LS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                     A+   + D ++    ++T D ++ ++  G     K Y +P G   S    
Sbjct: 527 KQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAK 583

Query: 587 GEAIQLLIDLNHNQDI 602
           G+A+  L+ L   + I
Sbjct: 584 GKAVVNLVQLQPEEKI 599


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/637 (39%), Positives = 370/637 (58%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I+N +ISIE+L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIENEDISIEELMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILDAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+GL IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+   +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLRILSDADRLMEVIREELELMRDQF------GDERRTEITANTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/736 (35%), Positives = 418/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+  K+    +  E+ E+++ +      G +R +    SR D    
Sbjct: 479 FKELIDRIKYLISILSDIKELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|332344011|gb|AEE57345.1| DNA gyrase, A subunit GyrA [Escherichia coli UMNK88]
          Length = 875

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATAHGT 654


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/759 (34%), Positives = 426/759 (56%), Gaps = 39/759 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+  ++    KKSARIV
Sbjct: 12  INIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGDSAAA RYTE RM+++
Sbjct: 72  GDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSRL 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 132 AQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+A   L+DNP+ S++ L+EY+ GPDFPT G +   +  + ++Y  GRG  ++R R  +E
Sbjct: 192 CDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGK-GLYDAYHTGRGTVKMRGRVEIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   +V+ EIP+ + KS L+EKIA L+  ++I  + D+RDES  + +RIV+  K R
Sbjct: 251 ERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIRIVIDLK-R 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + PD+++ +++  + +E+ F +NM  +   R P ++ L   L  ++ HRREV+ RR+ +
Sbjct: 310 GVIPDIVVNALYKFTPLESSFGINMLAVVDNR-PVLLTLKSALSCFVDHRREVVIRRTRY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  +ID+++A+IR   N ++ +  +++ F L+E Q  AIL++R
Sbjct: 369 DLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMATFELSEIQARAILDMR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+  ++ +E  +LL + E   S+L++ +   +++  EIRE++E F        R
Sbjct: 429 LQRLTGLQREELLAEYKDLLQKIEFYKSVLDNSEVLRSEMKREIREIRETFVTP-----R 483

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT    ++ A      + +I  + + + +S RG+++          K     ++ALH  +
Sbjct: 484 RTEV--LTEALGGIDIEDLIPDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSD 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
            D ++  L       + L +  G+ + L    +  G     G  I  L+ L   + + T 
Sbjct: 542 DDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLEEGEWVTTV 601

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVT---G 658
                +      L V+ +G   +V+ S      R  KT  + V   E  +LVV       
Sbjct: 602 LALREFAEDKYFLFVTRRG---MVKRSSASLYARCRKTGLMAVGLREDDELVVVRPIRED 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +H+ +   +   + FS   I  M R     KG+ L+  +D  ++ V+   + +    +  
Sbjct: 659 NHIVLATADGFAIRFSCGDIRPMGRVATGVKGIALRR-QDSVVAGVVLKDVDQTTEIMSI 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +     L  L  RGG G +  K   ++G  + +
Sbjct: 718 SANGYGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGA 756


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 265/690 (38%), Positives = 396/690 (57%), Gaps = 39/690 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+   +   +KKSAR+VG+VIGK
Sbjct: 15  LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSARVVGDVIGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+++A   L 
Sbjct: 75  YHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRLAGEFLA 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+  L 
Sbjct: 135 DIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP   I++++  I GPDFPTG  I   R  + ++Y  GRG  ++R R  VEE  +  
Sbjct: 195 QLDNPGCDIKEIITLIHGPDFPTGASIYGGR-GLYDAYTTGRGSIKIRGRVEVEERKKDY 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +V+ EIPY + KS L+EKIA LI   RI  + D+RDES  + +RIVL  K + +  D+
Sbjct: 254 QSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLK-KGVIADI 312

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +  +++  + +ET F +NM V++  R P  + +  +L+ +LAHRREV+ RR+++ ++  +
Sbjct: 313 ITNALYKYTPLETSFGINMMVVADNR-PATLNIQQMLEHFLAHRREVILRRTAYDLRKSE 371

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NIDE++AIIR   N  + +  ++ RF L+E Q  AIL++RL+ L  
Sbjct: 372 ERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMERFGLSERQAQAILDMRLQRLTN 431

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E + L+   E + S+LN+ +     I  EI+E+++ ++       R+T   E
Sbjct: 432 LERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATP-----RKT---E 483

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDSLKIA 554
           V    +      +I  E + + +S RG+I+  K  +        K         D    +
Sbjct: 484 VLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQS 543

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---Y 608
             A T  + LLL T+ G+ + LP   +  G+    G  I  L+ ++  + + TA     +
Sbjct: 544 FCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREF 603

Query: 609 DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            S    L V+ +G   +V+ S  E+  N R          E    L VK   D+  V+  
Sbjct: 604 SSERYFLFVTKRG---MVKRSCTELYKNCRSTGIIAVSLKEGDELLTVKEIDDNAEVLLA 660

Query: 667 NRKLLI--FSIDQIPEMSRG----KGVRLQ 690
            ++ L   F I  I    RG    KG+ L+
Sbjct: 661 TQQGLSNRFHISGIRPTGRGAAGVKGIALK 690


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   E + 
Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/697 (36%), Positives = 408/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   +VVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++EV+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  IT  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI +  ++ I
Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE     + GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTGKSGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + +V  N   ++F+ + +  M R  +GV+  + +DG
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRSAQGVKGMTLEDG 694


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/322 (60%), Positives = 257/322 (79%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           L GLLIAYLNIDE+I IIR ED+PKPVMV+R+ LT+NQV+AILN+RLRSLRKLEE++I+ 
Sbjct: 1   LGGLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRK 60

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+  
Sbjct: 61  EFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEA 120

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           +QQAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T 
Sbjct: 121 IQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTG 180

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           GKA+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K L+VS+ GN F+V E+
Sbjct: 181 GKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEA 240

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           E+IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRL
Sbjct: 241 ELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRL 300

Query: 690 QSYKDGGISDVICFKICEGLTW 711
           Q YKDGGISDV CF I +GL W
Sbjct: 301 QRYKDGGISDVRCFAISDGLVW 322


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/709 (35%), Positives = 410/709 (57%), Gaps = 58/709 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G++  +A KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF+  +++   EP V P+K P LL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +I I++L+ YI  PDFPTGGII    E + E+++ GRG   +RA
Sbjct: 185 NLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I+  A+L+  K+I  + +IRDES  +   V++
Sbjct: 244 KVGFEEVN-GREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  GR PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I IIR   + D+ +  ++ RF L+E Q  AI
Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIERFKLSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + ++     +  LL S + +   I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELLASKEMRMQVIKDELAEIRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I+  SL  +       V   + 
Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADESVVITISHAGYIKRTSLSEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D L+    A     ++  +  GK      Y +P G   S    G AIQ LI++  
Sbjct: 534 GTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTKAS---KGRAIQNLINI-E 589

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK 655
           + D V AF+     K        +   ++   +I  T++G   KT L+  S+ ++  V  
Sbjct: 590 SDDKVKAFICTQDLK--------DQDYIKSHNLIMVTKQGQVKKTSLEKYSKPRVNGVAA 641

Query: 656 VT---GD------------HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           +T   GD             V + G++ K++ F  ++   M R   GVR
Sbjct: 642 ITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPMGRTASGVR 690


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/621 (39%), Positives = 352/621 (56%), Gaps = 55/621 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KSAR VG+VIGK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R+T++A+ +L 
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P +SI+ L + + GPDFPTGGII+  R  I  +Y+ GRG   +R +  +E V +  
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGKVEIETVRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R   P+++
Sbjct: 240 EAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R +V+ RR+ F +     
Sbjct: 300 LNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------------- 420
           R  IL GL IA  NIDEII +IRN   P   +  ++SR                      
Sbjct: 359 RAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLN 418

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L S  +    + 
Sbjct: 419 PDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+ EVK  F+       RRT   E    +     + +I++E + V +S+ G++      
Sbjct: 479 TELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSG 583
             R+ +      S +  +E D +     A T   +L  S+ G+ Y      LP   L   
Sbjct: 531 TYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP---LAPP 587

Query: 584 RGHGEAIQLLIDLNHNQDIVT 604
            G G+A+  ++ L   + I T
Sbjct: 588 NGRGKALINILPLEQGERITT 608


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I +  I++E L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++MPL  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +++R           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 631


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 271/775 (34%), Positives = 422/775 (54%), Gaps = 43/775 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N  V+E    +S+   L++ YL YA+S I  RA+PD+RDG KPVHRR + AM E+G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   + KSARIVG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++   I+  +D+D VDF   Y+   +EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL D+P I++ +L+  I GPDFPTG  I   R  I E+Y  
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYIC-GRSGIREAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA   VE    G    I++TEIPYQ  K+ L+EKIA L+  K+I  + ++RDE
Sbjct: 240 GRGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R+ + ++++  ++ ++ M+  F + +  +   + P ++ L  IL+ +
Sbjct: 300 SDRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNK-PMILNLKQILEHF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HR+ V++RR++F +   + +  IL+GL +A  N+DE++ +I+    P   K  +V RF
Sbjct: 359 LVHRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q   IL++RL+ L  LE  +I S+ +N+L E  ++ ++L         I  E  E
Sbjct: 419 ELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQEITRLKTILADEALILGIIKDEFLE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           ++E +        RRT   +   A    L + +I  E + V +++ G+I        RS 
Sbjct: 479 IRETYGDE-----RRTVIID---AVDDLLPEDLIAPEDMAVTVTHSGFIKRNPAALYRSQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHG 587
                 +S     E D +     A T D  L  +  G     K Y LP    L GR   G
Sbjct: 531 HRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKVYQLP----LVGRTARG 586

Query: 588 EAIQLLIDLNHNQDI-----VTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +AI  L++L+ ++ +     VT+F   D +  +L+V+ +G        E     RKGK  
Sbjct: 587 KAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRA 646

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR-LQSYKDGGIS 698
           L ++  +++     + GD   ++  ++ K + F    +  M R   GVR +   +D  + 
Sbjct: 647 LTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTAAGVRGITLGEDDEVV 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I     + +  +   G  Y +        + KRGG G +  K   R+G  +S+
Sbjct: 707 SAIVASSNDSILVVTENG--YGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISA 759


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 414/713 (58%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIYKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR +
Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    +++ +  ++S+F L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L    +    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPDRVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I+++  +    A+++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGESIQTIINVDSERSD-DAYLFFTTRAGIVKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V+    D   ++G      + F+   +  MSR   GVR  + ++G
Sbjct: 642 KDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMSRSATGVRGVNLREG 694


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 412/704 (58%), Gaps = 31/704 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   EGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++   +L+G++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+IP 
Sbjct: 124 AKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    + +IDNP+I+I +L+  I GPDFPT GII+ +   I  +Y  GRG   VR
Sbjct: 184 HNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGT-SGIRSAYETGRGKILVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+  +EEV +G   I++TEIPYQV KS+LIE +A+L+  K+I  + DIRDES  D +RIV
Sbjct: 243 AKAEIEEV-KGRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++ +  ++  + M+  F + M  L +   P+V+ L  +L  +L  + E++
Sbjct: 302 IELK-RDANPNVTLNQLYKHTRMQDTFGIIMISL-VNNEPKVLNLKQMLVYYLQFQEEIV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+    +  +  ++S FSL+E Q  
Sbjct: 360 TRRTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQAQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I++E + L+   + +  +L + +     I  E+ E+++ +   
Sbjct: 420 AILDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKY--- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              G  R T  ++S  D     + +IE++ + + +++ G+I+ + + +          + 
Sbjct: 477 ---GDERKTEIQISNDDINI--EDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGIQ 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D ++      T + IL  +  GK Y L    +  +GR   G  +  LI L  +
Sbjct: 532 AMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQGD 591

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKV 656
           + I     +    K           ++++++I   A+ RK G   + +  E+++  V   
Sbjct: 592 EQIQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMT 651

Query: 657 TGD-HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGIS 698
           TG+  + +  +N   + FS D + P      GVR  + + G I+
Sbjct: 652 TGESEILIFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIA 695


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+ +I GPDFPT  II   +  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + M+  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKDILAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+GL IA +NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  ++E ++ +     RRT   E++        + +I +
Sbjct: 485 IAELLFILRSPERLMEVIREELEAIREQYNDA-----RRT---EITHNSADINIEDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y L    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQDERI-TAILPVREYEEGMNVFMATASGT 654


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/647 (39%), Positives = 381/647 (58%), Gaps = 60/647 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G 
Sbjct: 4   SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 64  DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 124 AAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I+++YR G
Sbjct: 184 MATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 242

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDES
Sbjct: 243 RGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 302

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  +
Sbjct: 303 DKDGMRIVIEVKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P   K  +++R 
Sbjct: 361 VRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIARP 420

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 421 WDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 480

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL + E++  +L S ++    I  E+  ++E+++ +     RRT   E + AD 
Sbjct: 481 LEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDA-----RRTEITE-NTADI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+++        + +      SA   KE D ++  L A+T
Sbjct: 535 NI--EDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592

Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            D IL  S+ G+ Y +    L  + RG  G  I  L+ L  ++ I  
Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITA 639


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T         + +   ++  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/568 (38%), Positives = 358/568 (63%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKSA
Sbjct: 9   VTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA RYTE+RM
Sbjct: 69  RIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTESRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +++D +D++D Y+ E+ EPVV P++FPNLL NGT+GIAVGMAT+IP H +
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA+   P+I+I++L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMIL-GRSGIRKAYETGRGSITLRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  + D+RDES  +   ++   
Sbjct: 248 DIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +  +++ +++ L+ ++T F +NM  L  G+ P+V+ L   LK +L H++ V+ RR+
Sbjct: 308 RKDANASVILNNLYKLTALQTSFGINMLALVDGQ-PKVLNLKQCLKYYLDHQQVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  ++DE+I++IR+       +  ++++F L++ Q  AIL+
Sbjct: 367 EFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    +++++L   ++    I  E+ E+KE F+      
Sbjct: 427 MRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
            RRT    VS   +    + +I +E I + +++ G+++ L        K     +  +  
Sbjct: 483 -RRTEI--VSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRGGRGIQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            E D ++  +   T + +L  +  GK Y
Sbjct: 540 NEDDFVEHLITTSTHNTLLFFTNKGKVY 567


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 282/807 (34%), Positives = 444/807 (55%), Gaps = 80/807 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + ++T  E N   V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM  +G 
Sbjct: 5   TENSTNFESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMDVLGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DGDSA
Sbjct: 65  DYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM +++  +LQ +++D VDF D Y+  +SEP V P++ PNLLANG+SGIAVG
Sbjct: 125 AAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ EA L  I+N +I+I++LLE + GPDFPT GII      I ++Y  G
Sbjct: 185 MATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGII-NGTSGIRQAYETG 243

Query: 247 RGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           +G   +R   CV  + G     I+VTE+PYQV K++LI KIAEL+  KRI  +  +RDES
Sbjct: 244 KGKIYLR---CVSHIEGEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R   P++++ +++ L++M+T F +NM  +  G +P++M L  IL+ ++
Sbjct: 301 DKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKG-IPKLMTLKDILEAFI 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------- 409
           AHRR+V+ RRS F +     RV +L+GL +A  NID I+ +I++                
Sbjct: 360 AHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAKTW 419

Query: 410 -------------------EDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                              E+ PK +   M   + L++ QV AIL+L+L  L   E+ +I
Sbjct: 420 RSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKDKI 479

Query: 448 KSELDNLLAEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
             E + LL   E+I  LL+     ++  Q+ CE     E+    ++ G  R T       
Sbjct: 480 FDEFNELL---ERIKYLLDILQTPERLMQVICE-----ELIDIQSNYGNARMTQILEHNI 531

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHA 557
           D  TL+  +I +E   V +S+ G+++  SL  +          SA   K+ D +     A
Sbjct: 532 D-LTLED-LIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIA 589

Query: 558 HTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDST 611
           ++ D +L  S+ GK Y L   +L ++ R   G+ I  L+ L   ++I+ A +    +D  
Sbjct: 590 NSHDIVLCFSSFGKVYWLKVYDLPMASRISRGKPIINLLPL-EKKEIINAILPILKFDEN 648

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
             + + +S G       +      + G   +++ + +++  V   +G+H + +   N K 
Sbjct: 649 HFVFMATSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKS 708

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFKICEGLTWIDSA-GRSYNRSENDL 726
           + F    +  + R   GVR     DG   +S ++  +    LT  +   G+  + +E   
Sbjct: 709 IRFKESDVRIVGRTAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEY-- 766

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  RGG G +  K   R+GK + +
Sbjct: 767 --RVQSRGGSGVISIKTSDRNGKIIGA 791


>gi|332520258|ref|ZP_08396720.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 371/609 (60%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN EI I++L+++I  PDFPTGG I    + + E++  GRG   +R 
Sbjct: 185 NLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EEV +G  CI+VTEIPYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 NANIEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G+ PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGK-PQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E +  +L+   ++ + I  E++ V++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDILDKKDRRMSIIKEELQLVRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+  SL  +       V   A 
Sbjct: 477 -GDERRSKIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      Y +P G+  S    G AIQ LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DKVMAFI 598


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/638 (39%), Positives = 372/638 (58%), Gaps = 62/638 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I++  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIEDENISIEALMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILDAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+GL IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +L+S ++    I  E+  +++ F        RRT       A+ A +  + +I 
Sbjct: 485 IAELLHILSSAERLMEVIREELELMRDQFGDD-----RRTEIT----ANTADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 376/629 (59%), Gaps = 31/629 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+ + + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEV-ETRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR   N D  +  +++ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAEFDFSVVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  +  
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSY-- 475

Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
               G+ R T  E+S       + + ++    + V +S RG+I+ + ++   L       
Sbjct: 476 ----GQPRAT--EISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR-GHGEAIQLLIDL 596
              +  +E D+++    + T D +L  +  GK ++L   ++   S R   G AI  LI +
Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPV 589

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKG 621
             ++ I TA +    + +   LL+ ++KG
Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKG 617


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/698 (35%), Positives = 401/698 (57%), Gaps = 36/698 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIV
Sbjct: 11  VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA RYTE RM+++
Sbjct: 71  GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+LQ +D++ VDF   Y+E   EP V P+KFP LL NGTSGIAVGMAT+IP HN+ E+
Sbjct: 131 AELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNMCEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L LID+P+ +I+ L++ I GPDFPT G+I+  ++ I ++Y  GRG  ++RA   +E
Sbjct: 191 IDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLIL-GQDGIRQAYTTGRGVIKMRANARIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I+VTE+PYQV K+RL+EKIA+L+  K+I  +  + DES      ++    R 
Sbjct: 250 TLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVIDLRRD 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++  + ++  F + M  L  G+ P+++ L  +L  ++AH+ +V+ RR+ + 
Sbjct: 310 ANANVILNQLYKHTQLQDSFGVIMLALVDGK-PKILNLKEVLHYYIAHQEDVITRRTRYD 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  ++D +I  I   R  D  +  ++S F L+E Q  AIL+LRL
Sbjct: 369 LKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQAILDLRL 428

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I+ E   +L   E+  ++L    +    I  E++ VK  F  +    RR 
Sbjct: 429 QRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDA----RRT 484

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548
               + S  D     + +I +E + + +++  +I+ +   +          +  +  KE 
Sbjct: 485 RLTVDTSEID----VEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEK 540

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++  L   T   IL  +  G+ Y L A  +   S    G AI  L+ L  ++ I TA 
Sbjct: 541 DFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKI-TAV 599

Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGK-TFLKVSSEEKMKLVVKVTGD 659
           +    ++    L + + KG   IV+++ ++   N  KG    + +  ++++  V    G+
Sbjct: 600 IQVKGFNPDAYLFMATKKG---IVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGE 656

Query: 660 HVAVVGENRKL-LIFSIDQIPEMSR-GKGVRLQSYKDG 695
              ++G    + ++F  D +  M R  +GV+  S  DG
Sbjct: 657 RDMILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDG 694


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/560 (40%), Positives = 349/560 (62%), Gaps = 22/560 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ E +RIV+  + R +   +
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVR-RDVSASV 298

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+ RR+ F     +
Sbjct: 299 ILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAE 357

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  +IDEIIA+IR   ++D+ K  M+ RF L++ Q  AIL++RLR L  
Sbjct: 358 ARAHILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTG 417

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I++E   LL     +  +L + ++    I  E++E+ + F        RRT    
Sbjct: 418 LERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD-----RRTELLV 472

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
                         E+  IT  ++N G+I        R+ +     +  +   + D +K 
Sbjct: 473 GEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKT 530

Query: 554 ALHAHTTDRILLLSTDGKAY 573
            +   T D +L  +  GK Y
Sbjct: 531 LVSCSTHDTLLFFTNKGKVY 550


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 380/631 (60%), Gaps = 31/631 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+      K
Sbjct: 4   QENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPHK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +++ + ++ +D++  ++ E+ EPVV P++FPN L NGTSGIAVGMAT++P 
Sbjct: 124 ARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  GRG   +R
Sbjct: 184 HNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSITMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   I+V EIPYQV K+RL+EKIA+L+  K+I  + D+RDES  +   ++
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + M+T F +NM  L  GR P+ + +   +  ++ H++EV+ 
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGR-PKTLNIKQAIYYYIEHQKEVVR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL +A  ++DE+IAIIR+    D+ +  +++RF L+  Q  A
Sbjct: 362 RRTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFGLSTEQTQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   + A  E++ ++L   +   + I  E+ E+KE +  + 
Sbjct: 422 ILDMRLQRLTGLEREKIEGEYREVKALIEELRAILGDEELLLDIIRNELIEIKERYGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDL--------S 541
               RRT    V R D   L+ + +I    + + +++ G+I+S+ S S            
Sbjct: 481 ----RRT----VIRTDIVELEDEDLIPVRDMMITLTSEGYIKSIPSDSYRTQRRGGRGKQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
            +   + D +   L A T D IL  +  G+ + L    +  +S    G  I  L+ ++  
Sbjct: 533 GMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSRTAKGMPIINLLQIDKG 592

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           + + T    D    L       N  + EE++
Sbjct: 593 EKVETMIPVDFNSYL------ANQTVAEETQ 617


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48
           D + N    +E+N    +L FA               + E +L YA+S I  RA+PD+RD
Sbjct: 216 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 275

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  R
Sbjct: 276 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 335

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG++DGD AAA RYTEARMT++   +L+ +++D +DF D Y+  + EP V 
Sbjct: 336 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 395

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT
Sbjct: 396 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 455

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
            G+I+  +  I  +Y  GRG  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAE
Sbjct: 456 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 514

Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           L+  K+I  + D+RDE++    VR+V+  + +  +  +++ +++  + ++T F +NM  L
Sbjct: 515 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 573

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             GR P+++ L   L  +L H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ 
Sbjct: 574 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 632

Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR  D  K  M S   RF L+E Q  AIL++RLR L  LE  +I++E + LL    ++++
Sbjct: 633 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 692

Query: 464 LLNSGKQQWNQIACEIREVKEIF 486
           +L   +     +  E+ E+++ F
Sbjct: 693 ILADEEVLLQLVRDELTEIRDRF 715


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/618 (40%), Positives = 371/618 (60%), Gaps = 36/618 (5%)

Query: 6   ISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N   +VEE    +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M 
Sbjct: 1   MRNEEHIVEEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL     FKKSAR+VG+V+GK HPHGD SVYD+LVRLAQ F  RYP++  QGNFG+ID
Sbjct: 61  EMGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE +M+++ E +L  + +D VDF   Y++   EP V P+ FP +LANG+SG
Sbjct: 121 GDPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++  HN+ EIC+A  A+I+NP+I +E L++YI GPDFP+G II   ++ I+++
Sbjct: 181 IAVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIIC-GQQGIIDA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG    RAR+ +EE  RGS  I+ T+IPYQV K+ L++KI EL     +P +  +R
Sbjct: 240 FSTGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDEL-RRNDLPAISAVR 298

Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES  E +RIV+  K  S+ P +++ ++F+ + +++ F +N   L  GR PQ++ L  IL
Sbjct: 299 DESDREGIRIVVELKKGSV-PRIVLNTLFLRTPLQSNFNVNNLALVNGR-PQLLSLKEIL 356

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MV 418
             ++ +R +V+ RR+ + +Q  + R  IL GL I   NIDE+I II+ +ED       + 
Sbjct: 357 VHYINYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQ 416

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F LT+ Q DAI++++L  L  LE  +I  EL  L  +      LL   ++    +A E
Sbjct: 417 KAFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKDLLADRRKILGVVAQE 476

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI------- 530
            RE+      +   G +R T  E+ RA+    Q +  I+ E + VVISN+G+I       
Sbjct: 477 TREL------AAKYGDKRLT--EIQRAEIGQTQVEDFIKNEEVVVVISNKGFIKRVVAEE 528

Query: 531 -RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGR 584
            RS       +        D ++    A T D ++ +S+ GKAY      +P G+ +S  
Sbjct: 529 YRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPEGSKVS-- 586

Query: 585 GHGEAIQLLIDLNHNQDI 602
             G +I+ LID+   ++I
Sbjct: 587 -KGSSIKQLIDITDGEEI 603


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  II   +  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + M+  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA +NID II +IR+   P    ++               
Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LT+ Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  ++E+++ +     RRT   E++        + +I +
Sbjct: 485 IAELLFILRSPERLMEVIREELVAIRELYNDA-----RRT---EITHNSADINIEDLISE 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y L    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQDERI-TAILPVREYEEGMNVFMATASGT 654


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/736 (35%), Positives = 419/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+  K+    +  E+ E+++ +       +R++   E SR D    
Sbjct: 479 FKELIDRIKYLISILSDIKELICVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F        RRT   E++        + +I +
Sbjct: 485 IAELLHILGSAERLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINR 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 411/711 (57%), Gaps = 55/711 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I++   +    A+++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
             E+++  V+    D   ++G      + F    +  MSRG    KGV L+
Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMSRGATGVKGVNLR 692


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/674 (37%), Positives = 383/674 (56%), Gaps = 57/674 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +RA+   E
Sbjct: 206 VDATLALIDDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRTE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  S M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR+                            D
Sbjct: 383 DLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLID 442

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++LTE Q  AIL+LRL+ L ++   ++  EL+ L A+ ++   +L+S +
Sbjct: 443 DPLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + I  E+R V+E F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RIMSIIGDELRSVREQFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S  G G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 615 QSSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSE 647
             R GK  +K+  +
Sbjct: 675 VRRNGKIAMKLPED 688


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 411/747 (55%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 251/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T         + +   ++  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +    ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 239

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 240 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 300 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 358 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 417

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 418 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 477

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 478 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 529

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 530 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 589

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 590 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 647


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/696 (35%), Positives = 400/696 (57%), Gaps = 48/696 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     FKKS
Sbjct: 8   NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H 
Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 SDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ ++ RR
Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  ++DE+IA+IR     +     ++  +SL+E Q  AIL
Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+ +   
Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELIEIKERFNDT--- 482

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
             RRT   E+  A   T++ + +I  E I + +++ G+I        RS K     +  +
Sbjct: 483 --RRT---EIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGE 588
              E D ++  +   T D IL  S  GK Y                +P  NLL     GE
Sbjct: 538 GTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVE-KGE 596

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            I  +I ++          +D    L   +  G +     S+       G   L +  E+
Sbjct: 597 WINAIIPVSE---------FDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDED 647

Query: 649 KMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
           ++  V    G+   ++G  + +LI F+   + EM R
Sbjct: 648 ELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREMGR 683


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/575 (39%), Positives = 360/575 (62%), Gaps = 32/575 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +VK +++   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKS
Sbjct: 6   SVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEAR
Sbjct: 66  ARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAVGMAT+IP H 
Sbjct: 126 MSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPHQ 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I  +Y  GRG   VRA+
Sbjct: 186 LGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQIL-GRSGIRRAYETGRGSITVRAK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E    G   I+V E+PYQV K++LIEKIA+L+  K+I  + D+RDES  + +RIV+ 
Sbjct: 245 VEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIVME 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  + ++L+ +++  + ++T F +N+  L  G  P+V+ L   L  +L H++ V+ R
Sbjct: 305 VK-KDANANVLLNNLYKQTSLQTSFGINLLALVNGE-PKVLNLKQCLYYYLEHQKVVIKR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R++F ++  + R  IL+GL IA  ++D +I +IR+    D  +  +++ FSL+E Q  AI
Sbjct: 363 RTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTEFSLSEKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE F+ +  
Sbjct: 423 LDMRLQRLTGLEREKIEEEYQGLMQLIAELKAILADEEKVLEIIREELTEVKERFNDT-- 480

Query: 492 LGRRRTT-----FCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
              RRT      F  +   D       +I ++ + + +++ G+I        RS +    
Sbjct: 481 ---RRTEIMVGGFENIEDED-------LIPRQNVVITLTHNGYIKRLPLSTYRSQRRGGR 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  +   E D ++  L   T D +L  +  GK Y
Sbjct: 531 GIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVY 565


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/633 (38%), Positives = 353/633 (55%), Gaps = 59/633 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVY +LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +AL DNP +SI++L + I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 197 LGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIIL-GRAGIRSAYHTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    I++TEIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDLRDESDRDGFRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR PQ M L  +L+ ++A R +V+ RR
Sbjct: 316 LKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGR-PQTMNLKDLLQVFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  IL GL IA  NIDEII +IR    P                      
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMSRDWPAQDVAAMIT 434

Query: 414 ---------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                     P   +R SL   Q  AIL+LRL+ L  L   +I  ELD L  E      +
Sbjct: 435 LIDDPRHRINPDGTARLSL--EQAKAILDLRLQRLTALGREEISDELDKLAVEIADYLDI 492

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +  + +  E+  +K  F+       RRT   E    +     + +I++E + V +
Sbjct: 493 LRSRARVQDIVKTELSAIKAEFATP-----RRTVIAE---QEGEMEDEDLIQREDMVVTV 544

Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-- 574
           S+ G+         R+ +      + +  +E D +     A T   +L  S+ G+ Y   
Sbjct: 545 SHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEK 604

Query: 575 ---LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
              LP   + +  G G+A+  ++ L   + I T
Sbjct: 605 VWRLP---IAAPNGRGKALINILPLEQGERITT 634


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQ+ K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 379/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ EISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +V++           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S  +    I  E+  V++ F        RRT   E++        + +I +
Sbjct: 485 IAGLLHILGSADRLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINR 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IRN   P   K  +V+R            
Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL E 
Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +E
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   K+ D ++  L A+T D ILL ST G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           K Y L    L L+ R   G+ I  L+ L  ++ I     VT F  D
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNLLPLEESERITAILPVTEFSAD 642


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 386/665 (58%), Gaps = 31/665 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  ++ L++++ GPDFPTGG I+ + + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  ++I  + D+RDES      
Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIRN    D  +  +V+ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  +  
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSY-- 475

Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
               G+ R T  E+S       + + ++    + V +S RG+I+ + ++   L       
Sbjct: 476 ----GQPRAT--EISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLIDL 596
              +  +E D+++    + T D +L  +  GK ++L   ++    S    G AI  LI +
Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPV 589

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
             ++ I TA +    + +   LL+ ++KG        E  A    G   + +++ +++  
Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVA 648

Query: 653 VVKVT 657
            V+ T
Sbjct: 649 AVETT 653


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/525 (42%), Positives = 342/525 (65%), Gaps = 16/525 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+  +
Sbjct: 89  KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 148

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 149 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 208

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 209 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 268

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G   +R
Sbjct: 269 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 327

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ E +RIV
Sbjct: 328 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 387

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K ++++P +L+  ++  ++++  + +N   L  G  P+V+ L   L+ +L H+ EV+
Sbjct: 388 IDVK-KNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVV 445

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429
            RR  F +     R+ IL+GL IA  NIDE+IAII   + + + +  +  RF+LTE Q  
Sbjct: 446 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTK 505

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++  
Sbjct: 506 AIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND- 564

Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL 533
               +RRT   +++   + T+  + +I +  I +  S +G+++ +
Sbjct: 565 ----KRRT---QINYEIQGTITDEDLIPQRDIVITTSAKGFVKRM 602


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/575 (39%), Positives = 359/575 (62%), Gaps = 24/575 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    +++ +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                K+ D ++  +   T D +L  +  G+ Y L
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRL 566


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G G   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/665 (36%), Positives = 388/665 (58%), Gaps = 31/665 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+ + + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR   N D  +  +++ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAEFDFSAIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + ++++  +  
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSY-- 475

Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
               G+ R T  E+S        ++ ++    + V +S RG+I+ + ++   L       
Sbjct: 476 ----GQPRAT--EISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLIDL 596
              +  +E D+++    + T D +L  +  GK ++L   ++    S    G AI  LI +
Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPV 589

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
             ++ I TA +    + +   LL+ ++KG        E  A    G   + +++ +++  
Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVA 648

Query: 653 VVKVT 657
            V+ T
Sbjct: 649 AVETT 653


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/736 (34%), Positives = 417/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+   +    +  E+ E+++ +      G +R +    SR D    
Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 381/632 (60%), Gaps = 40/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P++ P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA +DN +I +++L+ +I  PDFPTGGII    E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEV-EGRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  GR PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQLLNLKDMIHYFIEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L++ Q  AI
Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIERFKLSDIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E + +LL     + + I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALLADVNLRIDLIKEELTEIRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I        ++     V   + 
Sbjct: 477 -GDDRRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLSEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D L+    A     ++  +  GK      Y +P G   S    G AIQ LI++  
Sbjct: 534 GTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINI-E 589

Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKG 621
           + D V AF+         Y +T  L++V+ +G
Sbjct: 590 SDDKVKAFICTQDLKDKDYINTHNLVMVTKQG 621


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/638 (39%), Positives = 371/638 (58%), Gaps = 62/638 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   IAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++  IS+E L+E+I GPDFPT   I   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFI-NGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P++M L  I++ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKIMTLKEIIEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+GL IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +L S ++    I  E+  +++ F  +     RRT       A+ A +  + +I 
Sbjct: 485 IAELIHILQSAERLMEVIREELVAMRDQFGDA-----RRTEIT----ANSADINIEDLIN 535

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++  +    +         SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   K+ D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/598 (39%), Positives = 362/598 (60%), Gaps = 31/598 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KKSARIVGEV+GK
Sbjct: 16  MKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAHKKSARIVGEVLGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEARM ++A+ +L 
Sbjct: 76  YHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARMRKIADDMLA 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P HN+ E+ +  +A
Sbjct: 136 DIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMPPHNLSEVVDGTIA 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I+N +I I++L+ +I  PDFPTGGII    + + E++  GRG   +RA+   EEV +G 
Sbjct: 196 YIENNDIEIDELITHIKAPDFPTGGIIY-GYDGVKEAFHTGRGRVVMRAKASFEEV-QGR 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++   R   P+++
Sbjct: 254 ECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVYIIKRDAIPNIV 313

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + +++ F +N   L  GR PQ++ +  ++  ++ HR EV+ RR+ F ++  + 
Sbjct: 314 LNTLYKYTALQSSFSVNNIALVNGR-PQMLNVKEMIHYFVEHRHEVVVRRTEFELKKAED 372

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI+ +RLR L  L
Sbjct: 373 RAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMERFKLSEIQAKAIVEMRLRQLTGL 432

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ ++++E D +LA    +  +L   +++   I  E+ EVK  +        RR+   E+
Sbjct: 433 EQDKLRTEYDEILAFIIDLKDILARKERRMEIIKEELAEVKAKYGDE-----RRS---EI 484

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           + A      + MI  E + + IS+ G+I        ++     V   A   +  D L+  
Sbjct: 485 NFAGGDLSMEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKASSTRNEDFLEHL 544

Query: 555 LHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
                   +L  +  GK      Y +P G   S    G AIQ LI +  + D V AF+
Sbjct: 545 FVGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKSSKGRAIQNLISI-ESDDKVKAFI 598


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/764 (33%), Positives = 421/764 (55%), Gaps = 49/764 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KKSARIV
Sbjct: 10  INIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM ++
Sbjct: 70  GEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMQKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P HN+ E+
Sbjct: 130 SEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPHNLTEV 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +  I+N +I+IE+L++ I  PDFPTGG I    + + E++  GRG   +RA+  +E
Sbjct: 190 VDGTIQYIENNDITIEELIKTIKAPDFPTGGTIY-GYDGVREAFLTGRGRIVIRAKANIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           EV  G  CI+VTEIPYQV K+ +I K AE++  K++  +  IRDES  +   +++   R 
Sbjct: 249 EVN-GRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVYILKRD 307

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + +++ F +N   L  GR PQ++ L  ++  ++ HR +V+ RR+ F 
Sbjct: 308 AVPNIVLNKLYKYTALQSSFSVNNIALVKGR-PQMLNLKEMIHHFVEHRHDVVVRRTQFE 366

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL+IA  NIDE+I IIR   + D  +  ++ +F L+E Q  AI+ +RL
Sbjct: 367 LRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQFKLSEIQAKAIVEMRL 426

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE+ ++++E ++LL     +  +L+  +++   I  E+ E+K+ +      G  R
Sbjct: 427 RQLTGLEQDKLRTEYNDLLVTIADLKDILDKKERRMEIIKLELVEIKDKY------GDER 480

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548
            +  E +  D +   + MI  E + + IS+ G+I        ++     V   A   ++ 
Sbjct: 481 RSNIEYAGGDFS--MEDMIPDEQVVITISHAGYIKRTPLIEYKTQNRGGVGQKASTTRDE 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           D L+          +L  +  GK      Y +P G   S    G AIQ LI++  + D V
Sbjct: 539 DFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINIEQD-DKV 594

Query: 604 TAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            AF+         Y +   +++ + KG        +       G   + V  ++++ L  
Sbjct: 595 QAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGINAINVREDDEL-LEA 653

Query: 655 KVT--GDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEG 708
           K+T    HV +  ++ K + F   +   M RG    +G+ L   KD  +  V    +   
Sbjct: 654 KLTNGNSHVMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDAN 713

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   G     S +D    +  RGG G        ++GK ++
Sbjct: 714 ILVVSENGYGKRSSLDDY--RITNRGGKGVKTISITDKTGKLVT 755


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/736 (34%), Positives = 417/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+   +    +  E+ E+++ +      G +R +    SR D    
Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A++   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 408/682 (59%), Gaps = 36/682 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT GII+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D +R
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K +  + ++++  ++  + ++  F +NM  L   R P+V+ L  IL+ ++  + +
Sbjct: 301 IVIEIK-KDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQ 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  +IDE+I++IR      + K  ++ +F L+E Q
Sbjct: 359 VIRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIF 486
             AIL+L+L+ L  LE  +I+ E + L+    ++ S+L       N+I   IR E+ EI 
Sbjct: 419 AQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL----ADENKILAIIRDELNEIK 474

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           +K  D   R+T    + RA+     + +I++E + + +++ G+I+ + + +         
Sbjct: 475 AKYGD--ERKTA---IERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596
            + A+  KE D ++      T + IL  +  G+ Y L A  +  +GR   G  +  L+ L
Sbjct: 530 GIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQL 589

Query: 597 NHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650
           + N   Q +++   +D    L++ + KG   I++++ +    N RK G   + ++ ++++
Sbjct: 590 DPNEKIQAVISIKEFDEESFLVMCTKKG---IIKKTVVGMYKNIRKSGLIAINLNDDDEL 646

Query: 651 KLVVKVTGDHVAVVGENRKLLI 672
             V    GD   ++  N+ L I
Sbjct: 647 VSVRITKGDDDIIIVTNKGLAI 668


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V + +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/689 (35%), Positives = 382/689 (55%), Gaps = 55/689 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +M E G ++  +++KS
Sbjct: 16  DIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKSYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQSVYD+LVR+AQ F  R PL+ GQGNFG++DGD+ AA RYTE R
Sbjct: 76  ARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGSVDGDAPAAMRYTEVR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V   +L  +D+D VDF+D Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  +AL+D+P +  E LL+ + GPDFPTG +I+  R  I ++Y  GRG   +RA+
Sbjct: 196 LGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALIL-GRTGIRQAYLTGRGSILMRAK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E + +    ++VTEIPYQV K+ +IEK+AEL+  KRI  + +IRDES  D   V+  
Sbjct: 255 VAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEIRDESDRDGMRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++ +++ L+ ++T F +NM  LS G+ P V+ L  +L  ++A R EV+ RR
Sbjct: 315 IKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGK-PGVLTLHDVLTAFIAFREEVISRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  +L GL IA  NIDE+I +IR    P   +  +++R            
Sbjct: 374 TKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMARDWPAKDMAPLIA 433

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 434 LIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDKLAVEIADYLDILA 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  +KE F        RRT   E+         + +I++E + V +S+
Sbjct: 494 SRPRMRAIVRAELIAIKEEFGTP-----RRT---EIVEGFGDLEDEDLIQREEMVVTVSH 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ +      SA+  ++ D +     A T   +L  S+ G+ Y L   
Sbjct: 546 AGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVW 605

Query: 579 N--LLSGRGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESE 630
              L + +  G+A+  ++ L  ++ I +  +       +   +++  ++ G       ++
Sbjct: 606 RLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRRNALTD 665

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                R GK  +K++  E +  V   T D
Sbjct: 666 FQQVNRNGKIAMKLNEGEAIADVGLCTED 694


>gi|332558057|ref|ZP_08412379.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
 gi|332275769|gb|EGJ21084.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
          Length = 920

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/671 (37%), Positives = 384/671 (57%), Gaps = 57/671 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 24  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 83

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD ++Y +LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 84  GDTMGKYHPHGDGAIYYALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 144 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 203

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  VE
Sbjct: 204 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES    VR+V+  K R
Sbjct: 263 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633
           L GR   G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672

Query: 634 NTRKGKTFLKV 644
             R GK  +K+
Sbjct: 673 VKRNGKIAMKL 683


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/605 (39%), Positives = 362/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L++YI GPDFPT  +I   R+ I+++Y  GRG   +RA+ 
Sbjct: 188 GEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALI-NGRKGIIDAYHTGRGKVYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 NIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVILNNLYSQTQLQTTFGINMVALDHGQ-PKLFGLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + F ++    R  +L+GL IA +NID II +I++   P+                  M+ 
Sbjct: 365 TIFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLE 424

Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           R                     + LTE Q  AIL LRL  L  LE  +I  E   LL   
Sbjct: 425 RGGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E++  +L S ++    I  E+  VKE F+       RRT   E++ A      + +I +E
Sbjct: 485 EELLLILGSPERLMEVIRDELHAVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +       A   K+ D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRG 596

Query: 571 KAYTL 575
           + Y L
Sbjct: 597 RMYWL 601


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 408/682 (59%), Gaps = 36/682 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT GII+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D +R
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K +  + ++++  ++  + ++  F +NM  L   R P+V+ L  IL+ ++  + +
Sbjct: 301 IVIEIK-KDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQ 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  +IDE+I++IR      + K  ++ +F L+E Q
Sbjct: 359 VIRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIF 486
             AIL+L+L+ L  LE  +I+ E + L+    ++ S+L       N+I   IR E+ EI 
Sbjct: 419 AQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL----ADENKILAIIRDELNEIK 474

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           +K  D   R+T    + RA+     + +I++E + + +++ G+I+ + + +         
Sbjct: 475 AKYGD--ERKTA---IERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGR 529

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596
            + A+  KE D ++      T + IL  +  G+ Y L A  +  +GR   G  +  L+ L
Sbjct: 530 GIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQL 589

Query: 597 NHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650
           + N   Q +++   +D    L++ + KG   I++++ +    N RK G   + ++ ++++
Sbjct: 590 DPNEKIQAVISIKEFDEESFLVMCTKKG---IIKKTVVGMYKNIRKSGLIAINLNDDDEL 646

Query: 651 KLVVKVTGDHVAVVGENRKLLI 672
             V    GD   ++  N+ L I
Sbjct: 647 VSVRITKGDDDIIIVTNKGLAI 668


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/679 (36%), Positives = 377/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T         + +   ++  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 349/569 (61%), Gaps = 29/569 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL Y+LS I  RAIPD+RDG KPV RRI+++MSE+GL   ++FKK+ARIVGEV+GK
Sbjct: 14  LKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFKKNARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+ QPF  RYPL+  QGNFG+IDGD  AA RYTEARM ++ E +L+
Sbjct: 74  YHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTEARMPELGEYMLK 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDFR+ ++   SEPVV P+  PNLL NG SGIAVGM T+IP HN+ E+  A   
Sbjct: 134 DIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPPHNLNELVAALKL 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+ PE  +  LL++I GPDFPTGG +V+  E + E Y  GRG   +R ++ +E+ G+G+
Sbjct: 194 LIEKPESEVADLLKHIKGPDFPTGGQVVDG-EGLKELYETGRGKITIRGKYRIEDEGKGT 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIA----KRIPLLEDIRDES-AEDVRIVL-FPKNRS 319
             IV  EIPY V K+ +IE+I   ++     K+   ++D+RDES  E +R+V+   KN +
Sbjct: 253 -SIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGIRLVIELRKNAN 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  +F  +++++ F + MNV+   + P +M L G+L+ +L HR  V+ RR+ + 
Sbjct: 312 VKK--LINDLFKHTNLQSYFYVQMNVIDNEK-PSLMNLKGLLQSFLDHRVNVITRRTKYE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRL 436
           ++   +R  I++GL+ A   ID ++ IIRN + P+  + +      ++E Q  AI ++RL
Sbjct: 369 LEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQETIGVSEEQAKAIADMRL 428

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            SL KLE   +  EL NL  + E    +L   ++    I  E+ EV   F      G +R
Sbjct: 429 ISLSKLESTNLSEELKNLYKDIENAMDILQKKERLLGVIKEELDEVANKF------GDKR 482

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548
            T    ++ D A  +  MI+ E + +V++  G+++++ S    +          L   + 
Sbjct: 483 RTEILYNKGDLAE-EVEMIQDEDVVIVLTKWGYLKAIPSSEYKVQGRGGKGVKGLKISDE 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           D +K  ++ +   +++L S+ GKAY + A
Sbjct: 542 DDVKEVIYTNKLSKLMLFSSAGKAYQINA 570


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/706 (36%), Positives = 412/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHXAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVT  PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
 gi|333001821|gb|EGK21387.1| DNA gyrase, A subunit [Shigella flexneri K-218]
          Length = 875

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/606 (38%), Positives = 372/606 (61%), Gaps = 25/606 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM +VAE +++ +D+  VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 127 ARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++D+  +S+  L+E + GPDFPT   I+ + ES++++Y  G+G   +R
Sbjct: 187 HNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYN-ESLIKAYTTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           AR+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  E +RIV
Sbjct: 246 ARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIRIV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K +  DP ++M  ++  +++   F +N N+  +  +P+ + L  ++  ++ HR+E++
Sbjct: 306 LEIK-KGFDPHVVMNLLYEYTELRKNFSIN-NLALVNGIPKQLNLKELISAFIEHRKEIV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL IA  NID +I IIR        K  ++  F+L+E Q +
Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKEFNLSEIQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL+++L+ L  +E  +++ E   LLA  +  + +LNS ++  N     +RE  EI + S
Sbjct: 424 SILDMKLQKLTSIETEKLEEEFKILLALIKDYEDILNSPERVVNI----VRE--EIINLS 477

Query: 490 TDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541
              G  RRT         K ++   M ++E + V+++ +G+I+ +      L        
Sbjct: 478 LKFGDERRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRILQDEYKLQGIGGKGL 536

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
            +   ++ D + I L  +T D + ++S +GK Y + A  +   S    G+ ++ LI+L  
Sbjct: 537 GSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGE 596

Query: 599 NQDIVT 604
            ++I+ 
Sbjct: 597 TEEILA 602


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651
           ++ I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++ 
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/733 (36%), Positives = 411/733 (56%), Gaps = 74/733 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP IS+E L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408
           + F ++    R  IL+GL +A  NIDEII  I+                           
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423

Query: 409 ---------------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                          N D+P  +  S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D +  ++
Sbjct: 484 ILGQIAELTAILN----DFNLLMAVIREELAQVLQQYGD--GRRTEIIE-SRIDFS--RE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618
             +  GK Y L    +  + RG  G  I  L+ L+ N+  VTA +    +     + + +
Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLTEFPENHYVFMAT 653

Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676
           + G    V + E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+  
Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712

Query: 677 QIPEMSR-GKGVR 688
            +  M R  KGVR
Sbjct: 713 DVRSMGRTAKGVR 725


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 386/694 (55%), Gaps = 59/694 (8%)

Query: 6   ISNSNTLVEEN-----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+S+TL  E+     ++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E        + KSAR+ G+ +GK HPHG+Q++YD+LVRLAQ F  R PLI GQGNFG+
Sbjct: 61  MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE R+ + A  +L  +D+D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALID P++ IEKLL+YI GPDFPTG +I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +R+R  +EE+ +    I+VTEIPYQV K+ +IE+IAEL+  KR+  + +
Sbjct: 240 QAYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES+ +   V+F   R    D+++ +++ +S ++T F  NM  L+ G+ P +M L  +
Sbjct: 300 IRDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGK-PALMTLHDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+IA IR    P   +  +
Sbjct: 359 LTAFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREAL 418

Query: 418 VSR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           ++R                          + L+  Q  AIL+LRL+ L  L   ++  EL
Sbjct: 419 MTRDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D +  E      +L S ++    +  E+  VK  F      G  R T  E++ A+     
Sbjct: 479 DKIAVEIRDYLDILASRERIRTIVKDELLAVKAEF------GTPRKT--EITDAEGDFED 530

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+I        RS +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIAREDMVVTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD-----STCKLLV 616
           L  S+ G+ Y L    L LS  +  G+A+  ++ L   + I +          S  +++ 
Sbjct: 591 LFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALPDEETWSRLQIMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            ++ G     E S+     R GK  +K+   E +
Sbjct: 651 STTGGTVRRNELSDFTNVNRNGKIAMKLEEGEAI 684


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 419/715 (58%), Gaps = 41/715 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V ++ +   ++  Y+ YA+S I  RA+PD RDGFKPVHRR++ AM E G+     +KKSA
Sbjct: 73  VTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFAMKEAGITHDKPYKKSA 132

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+IDGDSAAA RYTE RM
Sbjct: 133 RVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRM 192

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L  +D++ V F   Y+    EP V P+K PNLL NG++GIAVGMAT++  HN+
Sbjct: 193 DRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGSTGIAVGMATNMAPHNI 252

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LI+NP+I+I +L+  I GPDFPTG  I+ +   I  +Y  GRG  ++RA  
Sbjct: 253 GEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGT-AGIKSAYMTGRGALKIRAVA 311

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            ++E  +    I+VTE+PYQV K+R+IE IA+L+  K I  + D+RDES  E +R+V+  
Sbjct: 312 EIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDLRDESDREGIRVVI-E 370

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +R  +P +++  ++  + MET F + +N+  +   P+ + L  +L+ +L +R E++ +R
Sbjct: 371 LSRGTNPKVVLNQLYKHTQMETTFGV-INLALVDGKPKELNLKELLEIYLEYRMEIIQKR 429

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL GL IA  NIDE++A+I+   N D+ K  ++  F+L E Q  AIL
Sbjct: 430 TLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLMENFALDEIQSKAIL 489

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++  EL+ L+    +++ ++ S + ++  I  E+ E+KE +  +   
Sbjct: 490 DMRLQRLTGLETKKVLEELEGLVKLIGELNKIIESDELKYEIIRNELLELKEKYGDA--- 546

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALH 544
             RRT   ++ +A     ++ +I +E + V I+N G+I+   LK++++       +  + 
Sbjct: 547 --RRT---KIMQAASEVREEDLIHEEEVVVTITNGGYIKRIPLKTYTMQHRGGRGIIGME 601

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            KE D ++    + T + IL  +  G     K Y +P G   S +  G+AI  L++L   
Sbjct: 602 MKEEDFVENLFISSTHNYILFFTNLGRLYWEKVYEIPEG---SRQSRGKAIVNLLELKGG 658

Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I   +    +D    LL+ + +G       SE   N RK    + V+ +E  +LV  +
Sbjct: 659 ETINAMIPVKEFDKNHYLLMATREGTIKKTPLSE-FKNPRKA-GIIAVTLDEDDELVRVL 716

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             D    V +V +  K + FS   +  M R  +GVR  +  DG   +V+   I +
Sbjct: 717 LTDGKKEVLIVSKKGKAIRFSEKDVRPMGRTARGVRGMAL-DGPEDEVVSLDIVD 770


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/670 (37%), Positives = 374/670 (55%), Gaps = 61/670 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +    
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R    D++
Sbjct: 240 EAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+ F +     
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR--------------------- 420
           R  +L GL IA  NIDE+IA+IR    P    + +M  R                     
Sbjct: 359 RAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLN 418

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S  +  N + 
Sbjct: 419 EDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+  V++ F+       RRT   E+         + +I +E + V +S+ G+I      
Sbjct: 479 EEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLT 530

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
             R+ +      S +  KE D +     A+T   +L  S+ G     K + LP G   S 
Sbjct: 531 TYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQS- 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T        DS   L V+  +++G     + S+ +   R 
Sbjct: 590 --RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 647

Query: 638 GKTFLKVSSE 647
           GK  +K+  E
Sbjct: 648 GKIAMKLEDE 657


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/680 (36%), Positives = 382/680 (56%), Gaps = 56/680 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  V++   +   YL YA+S I  RA+PD+RDG KPVHRRI+ AM E G D+   F+KS
Sbjct: 11  DVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD AAA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M + A  +++ +D+D VDF   Y++   EP+V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 131 MARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A+IDNP+I+ E+++E + GPDFPTGG I+  R  I  +   GRG   +R R
Sbjct: 191 LGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTIL-GRSGIRAAQLTGRGSVVMRGR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EEV +    I+VTE+PYQV K+R+IE+IAEL+  K+I  + D+RDES  D VR+V+ 
Sbjct: 250 CHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVIE 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + ++T F +N   L+ GR PQ+M L  I+  +L  R EV+ R
Sbjct: 310 IKRDAI-ADVVLAQLYKFTPLQTSFGVNSLALNGGR-PQMMTLREIIAAFLRFREEVITR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------------------- 413
           R+ F +     R  +L GL IA  NID++I +IR    P                     
Sbjct: 368 RTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLI 427

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  + ++   +SL+E Q  AIL+LRL  L  LE  +I  EL  +  + ++   +L+
Sbjct: 428 RLIDEPGRGIVDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILS 487

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +++  F+       RRTT   +  ++     + +I +E + V ++N
Sbjct: 488 SRPKLLEVMRNELIDMRNQFATP-----RRTT---IEDSEFEADIEDLIAREDMVVTVTN 539

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S +  K+ D L       T   +L  S+ G AY L   
Sbjct: 540 TGYIKRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVY 599

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY--DSTC----KLLVVSSKGNAFIVEESE 630
            L  G  +  G+A+  ++ L   + I T      D T      +   +SKG+      S+
Sbjct: 600 RLPLGTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSD 659

Query: 631 IIANTRKGKTFLKVSSEEKM 650
            +     GK  +K++  E++
Sbjct: 660 FVDIRANGKIAMKLNDGEQL 679


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 375/618 (60%), Gaps = 40/618 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q
Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                  RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K    
Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +     K+ D ++  +   T DR+L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589

Query: 584 RGHGEAIQLLIDLNHNQD 601
               EAIQ +I++  +Q+
Sbjct: 590 E-ENEAIQTIINVTKDQE 606


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 261/713 (36%), Positives = 407/713 (57%), Gaps = 34/713 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AMSE G+      KKSA
Sbjct: 52  LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  AA RYTEAR+
Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A   +IDNPE++ E+L+  + GPDFPTGGII+ + + I ++Y  GRG   VRA+ 
Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGT-QGIKDAYETGRGSITVRAKV 290

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            VE+V  G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES  + +RIV+  
Sbjct: 291 HVEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 350

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R   P +++ +++  + +++ F + +++  +  VP+ + L  IL+ ++ H+ +V+ RR
Sbjct: 351 K-RDAVPQVVLNNLYKKTQLQSNFGI-IDLALVDGVPRTLSLREILRHYIDHQIDVVRRR 408

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +    +RV IL+GLL A  NIDEI+ IIR   ++ + K  M  RF L E Q +AIL
Sbjct: 409 TEFDLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNERFGLDEIQGEAIL 468

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L  L    +  E+  L  +    + LL   ++    IA E+RE+   ++     
Sbjct: 469 QMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYAD---- 524

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            +RRT   ++S  D   L  + +I +E + V +++ G++        RS K     +  +
Sbjct: 525 -KRRT---QISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGV 580

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLS-GRGHGEAIQLLIDLN 597
             KE D ++    A T D +L  +  GK Y      LP G+  + G      I+ L +  
Sbjct: 581 SLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGE 640

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
             + ++T   +     L+  + +G       SE     + G   + +   +++  V +V 
Sbjct: 641 KVKAVITTRDFPEDNYLMFATKQGMVKKTAMSEYDRTRKDGLIAINLKDGDELVNVRRVH 700

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
            GD V +   + K ++F   +   M RG  GVR  + K  G + ++  +I  G
Sbjct: 701 PGDKVVLCSSDGKAILFDEAEARSMGRGTSGVRGITLK--GNATMLGMEITNG 751


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 267/745 (35%), Positives = 392/745 (52%), Gaps = 75/745 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ IE L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDIEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   + + 
Sbjct: 429 EASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDARRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRLQ----------SYKDGGISD 699
           +G+RL           S + GG+ D
Sbjct: 721 RGIRLAKGEEVVSLIVSERAGGVED 745


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S +G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSLQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf. novicida Fx1]
          Length = 868

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/761 (34%), Positives = 425/761 (55%), Gaps = 79/761 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q DAIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + + S+L+   +    +  E+ E+++ +      G +R +    SR D    
Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLI 672
           + + +  G    V+ SE       GK  + ++  +++  V    GD  + +  +  K + 
Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGDKQIMMFSDAGKAIR 706

Query: 673 FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGL 709
           F    +  M R      G+RL  + +  I  VI     EG+
Sbjct: 707 FDESDVRAMGRSAAGVTGMRL--HHNQKIVSVIVTNPDEGI 745


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48
           D + N    +E+N    +L FA               + E +L YA+S I  RA+PD+RD
Sbjct: 182 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 241

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  R
Sbjct: 242 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 301

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG++DGD AAA R+TEARMT++   +L+ +++D +DF D Y+  + EP V 
Sbjct: 302 YPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 361

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT
Sbjct: 362 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 421

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
            G+I+  +  I  +Y  GRG  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAE
Sbjct: 422 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 480

Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           L+  K+I  + D+RDE++    VR+V+  + +  +  +++ +++  + ++T F +NM  L
Sbjct: 481 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 539

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             GR P+++ L   L  +L H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ 
Sbjct: 540 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 598

Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR  D  K  M S   RF L+E Q  AIL++RLR L  LE  +I++E + LL    ++++
Sbjct: 599 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 658

Query: 464 LLNSGKQQWNQIACEIREVKEIF 486
           +L   +     +  E+ E+++ F
Sbjct: 659 ILADEEVLLQLVRDELTEIRDRF 681


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/688 (36%), Positives = 403/688 (58%), Gaps = 33/688 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L + +L YA+S I  RAIPD+RDG KPVHRRI++ M  +G+     +KKSA +VG+V+ K
Sbjct: 16  LRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKSAWVVGQVLAK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR++++A  +L+
Sbjct: 76  FHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEARLSKIALELLR 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDF D Y+  + EP+V PS+FPN+L NG++GIAVGMAT+IP HN+ E+ +  + 
Sbjct: 136 DIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHNLGEVIDGVIH 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+  +E+L+++I GPDFPTG +I+  RE I+++YR GRG   +RA   +EE   G 
Sbjct: 196 LIDHPDAGVEELMQHIKGPDFPTGALIL-GREGILDAYRTGRGSIILRAATQIEEASGGK 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+RL+EKIAEL+  KRI  + D+RDES      ++    R + P ++
Sbjct: 255 TRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIELRRDVKPRVV 314

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + ++T + + M  L  GR P+V+ L  +L+ +L H+ +V+ RR+++ ++  + 
Sbjct: 315 LNNLFKHTALQTSYGVIMLCLVDGR-PRVLNLGEMLRYYLRHQEDVIRRRTTYDLKKAEA 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +ID +I +IR     ++ +  ++ +F L+E Q  AIL++RL+ L  L
Sbjct: 374 RAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQFHLSEEQAQAILDMRLQRLTGL 433

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I  E   L+ + +++ ++L   K+    I  E+ ++K   +K  D  R R T  E 
Sbjct: 434 ERQKIDEEYAELVEKIKELRAILADEKKILGVIREELLDIK---AKYGDERRTRITAGEG 490

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
              D     + +I  E + V +S+ G+I        +S +     ++A+  KE D ++  
Sbjct: 491 EIED-----EDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHL 545

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST- 611
               +   +L  +  GK Y L A  +  L     G  I  L++++  + I       ST 
Sbjct: 546 FITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPIRSTD 605

Query: 612 -CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENR 668
             + L+++++         +   N R+G   + +S  E  +L+ V++T G    ++G   
Sbjct: 606 GGQYLIMATREGTIKKTPLDEFENIRRG-GLVAISLRENDELIAVRMTDGSRELILGTRS 664

Query: 669 KLLI-FSIDQIPEMSRG----KGVRLQS 691
            + I F    +  M RG    K V LQ 
Sbjct: 665 GMAIRFPETDVRSMGRGAAGVKAVDLQG 692


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 410/747 (54%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 355/598 (59%), Gaps = 45/598 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI++AM + G D+   F+
Sbjct: 9   DNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFR 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD AAA RYTE
Sbjct: 69  KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+++V++ ++  ++++ + F+  Y+E + EP V P+++PNLL NG  GIAVGMATSIP 
Sbjct: 129 TRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI    LALIDN +I I +L++Y+ GPDFPTGG+I+  ++ I   Y  GRG F++R
Sbjct: 189 HNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVII-GKDIIKHGYNNGRGSFKIR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
               VE +  G   +V+T IPYQV KS L E+IA+L+  K+I  ++DIRDES  E +R+ 
Sbjct: 248 GEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +N  ++P+ +   ++  + +E+ F  N   +  G+ P+   L   L  +L+ R +++
Sbjct: 308 IDLRN-GVEPETIKRQLYKNTQIESSFGFNTLAIVQGK-PKTCTLKDFLSNFLSFREDIV 365

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSR-------- 420
            +++ F +Q  + R  IL GL ++  N+D+II IIR+    ED  + ++ ++        
Sbjct: 366 IKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        +SL+E QV AIL LRL+ L  L   +I+ E+  L     +   +++S
Sbjct: 426 LISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIISS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K+    I+ E++ +KE F+    + RR      V   D     +  I+K+ + + ++ +
Sbjct: 486 KKELLKVISEELKNIKEKFA----VPRRTKIIDAVLNYD----IEETIQKQSVIITVTLQ 537

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           G+I        +  K      S +  ++ DS+   L  +T   +L  ST+G  Y + A
Sbjct: 538 GYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKA 595


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/636 (38%), Positives = 379/636 (59%), Gaps = 43/636 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V L  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L   
Sbjct: 3   NLFENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA 
Sbjct: 63  VAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            R+RA+  +E   +    +V+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D 
Sbjct: 242 VRIRAKHHIESKAKKD-VVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + SRF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSRFGLSS 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAILRSEEKLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   S +      
Sbjct: 479 FSTP------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKSYERQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G   S    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEG---SRTAKGK 583

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           A+  LI+L  ++ I+       +D +  L+  +  G
Sbjct: 584 AVVNLINLRADEKIMAIIPTPDFDESKSLVFFTRNG 619


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/637 (39%), Positives = 374/637 (58%), Gaps = 65/637 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L++YI GPDFPT  +I   R+ I+++Y  GRG   +RA+ 
Sbjct: 188 GEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALI-NGRKGIIDAYHTGRGKVYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 SIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVILNNLYSQTQLQTTFGINMVALDHGQ-PKLFSLKEMLKCFVNHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + + ++    R  +L+GL IA +NIDEII +I++   P+                  M+ 
Sbjct: 365 TIYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLE 424

Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           R                     + LTE Q  AIL LRL  L  LE  +I  E   LL   
Sbjct: 425 RAGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E++  +L S ++    I  E+  VKE F+       RRT   E++ A      + +I +E
Sbjct: 485 EELLLILGSPERLMEVIRDELYAVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536

Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++   L  +           A   K+ D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRG 596

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
                K Y LP   L S    G+ I  ++ L  ++ I
Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEEDERI 630


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/596 (40%), Positives = 359/596 (60%), Gaps = 51/596 (8%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR VG+V+GK HPHGD ++
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L  +D++ VDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LALID+P+++ 
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +R++  VEE+ +  + IVV EIP
Sbjct: 181 EQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLS 333
           YQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R   P++++  +F  S
Sbjct: 240 YQVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELK-RDATPEVVLNQLFRFS 298

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++ ++    R  IL GL
Sbjct: 299 PMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGL 357

Query: 394 LIAYLNIDEIIAIIRNE---------------------------DKPKPVMV--SRFSLT 424
            +A  N+DE++A IR+                            D P   M   + ++L+
Sbjct: 358 AVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLS 417

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL LRL+ L ++   ++  EL+ L A+ ++   +L+S ++  + IA E+REV+E
Sbjct: 418 ETQARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVRE 477

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            F+       RRT   + S        + +IE+E + V +++ G+I        R+ K  
Sbjct: 478 QFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRG 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590
              LS +  KE D +     A+T  ++L  +TDG  Y L    L  SGR G G+AI
Sbjct: 530 GKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 585


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 274/748 (36%), Positives = 413/748 (55%), Gaps = 71/748 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +++R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
             ++  +L S  +    I  E+  +++ F  +     RRT       A+ A +  + +I 
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQFGDA-----RRTEIT----ANSADINIEDLIN 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G 
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                 +E       G   + ++  +++  V   +G D V +     K++ F  D +  M
Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEG 708
            R   GVR    K  G   V+   I  G
Sbjct: 715 GRTATGVR--GIKLAGEDKVVSLIIPRG 740


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/599 (39%), Positives = 365/599 (60%), Gaps = 24/599 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N+ +++    VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI++A  E+ 
Sbjct: 1   MSEQNSGIQQ--PQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELA 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +    KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+
Sbjct: 59  NSYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAV
Sbjct: 119 AAAMRYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C+A   L+D+P+ +I  L+E + GPDFPT G +   +  + ++Y  
Sbjct: 179 GMATNIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGK-GLSDAYHT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VR R  VEE  +G   IV+ EIP+ + KS L+EKIA L+   +I  + D+RDES
Sbjct: 238 GRGTVKVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDES 297

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +R+V+  K R   PD+++ S++  + +ET F +NM  +   R P ++ L   L  +
Sbjct: 298 DRKGIRVVIDLK-RGTIPDIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALSCF 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           + HRREV+ RR+ + +Q  + R  IL+GL IA  +IDE++A+IR   + D+ +  ++ RF
Sbjct: 356 VDHRREVVIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQRF 415

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RL+ L  L+  ++ +E   LL + E   S+L + +   +++  EIRE
Sbjct: 416 ELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFKSVLENPEVLRSELKREIRE 475

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD 539
           ++E F+       RRT    ++ A      + +I  E + + +S RG+++  SL+++   
Sbjct: 476 IRETFATP-----RRTEV--LTDALGGIDIEDLIPDEEVVITLSRRGYMKRTSLENYQQQ 528

Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
                 ++ALH  + D ++  L       + L +  G+ + L    +  G    + + +
Sbjct: 529 KRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHI 587


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 273/730 (37%), Positives = 412/730 (56%), Gaps = 73/730 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 AEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYLRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYALTQLQVTFGINMVALHQGQ-PKLLNLKDILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+ L IA  NID II +IR    P    V+               
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VKE+++     GRR     E++        + +I +
Sbjct: 485 IAELIFILESPERLMEVIREELVAVKELYND----GRR----TEITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHVFMATASGT- 654

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   + V +   N K++ F   Q+ 
Sbjct: 655 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712

Query: 680 EMSR-GKGVR 688
            M R   GVR
Sbjct: 713 SMGRTATGVR 722


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/616 (38%), Positives = 372/616 (60%), Gaps = 33/616 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +I I++L++++  PDFPTGGII    + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIY-GYDGVREAFKTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES  + +RIV 
Sbjct: 244 KAVMEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++ P++++  ++  + +++ F +N   L  GR PQ++ L  ++  ++ HR EV+ 
Sbjct: 303 ILKRDAI-PNIVLNKLYKYTALQSSFSVNNIALVHGR-PQLLNLKDMIHYFVEHRHEVVT 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  IL+GL+IA  NIDE+IAIIR   N +  +  ++ RF LTE Q  A
Sbjct: 361 RRTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKRFELTEIQAKA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  LE+ ++++E D+++   E    +L +  ++ N I  E+  +K+ +    
Sbjct: 421 IVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDILANKSRRMNIIKEELEVIKDKY---- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSA 542
             G  R +  E +  D +   + +I  E + + IS+ G+I+  SL  +       V    
Sbjct: 477 --GDERRSMIEYAGGDVSI--EDLIPDEKVVITISHAGYIKRTSLTEYKRQNRGGVGQKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              +  D L+          +L  +  GK      Y +P G+  S    G AIQ LI++ 
Sbjct: 533 SATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSKTS---KGRAIQNLINIE 589

Query: 598 HNQDIVTAFVYDSTCK 613
            + D V AF+     K
Sbjct: 590 KD-DKVKAFICTQNLK 604


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 375/618 (60%), Gaps = 40/618 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q
Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                  RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K    
Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +     K+ D ++  +   T DR+L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589

Query: 584 RGHGEAIQLLIDLNHNQD 601
               EAIQ +I++  +Q+
Sbjct: 590 E-ENEAIQTIINVTKDQE 606


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEISI  L+E+I GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/608 (40%), Positives = 357/608 (58%), Gaps = 35/608 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NISN      E + + S+   ++  Y+ Y++S I  RA+PD RDG KPV RRI++AM 
Sbjct: 1   MENISN------ERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAML 54

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
             GL    AF K A +VGEV+   HPHGD SVYD+LVR+AQ +V RYPLI  QGNFG++D
Sbjct: 55  REGLLHNRAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVD 114

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTEAR+T +AE +L+ +DED VDF   Y E  +EP V P+  PNLL NG++G
Sbjct: 115 GDSPAAYRYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTG 174

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +   A IDNP I+I +L E I GPDFPTGG I+  R+ I E 
Sbjct: 175 IAVGMATNIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRII-GRKGIDEY 233

Query: 243 YRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              GRG  R+R     E + G     I+++ IPY V ++ L+ KIAEL+  K +  + D+
Sbjct: 234 MNTGRGIVRMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDL 293

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES E+ RIV+  K R   P++++  ++  + +E  F +NM  L   R P+ M +  ++
Sbjct: 294 RDESDENTRIVIELK-RGEFPEVIISKLYKKTALEASFGVNMLALDNKR-PKQMNMKEMI 351

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
             ++ HRREV++RR++FR++  + R  IL+G  IA  N+D+ I IIR   N D+ K  + 
Sbjct: 352 NCYIDHRREVIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQ 411

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            ++ L++ QV AIL+LRL  L  +E  +I+ E   LL   E++ S+L +  +  + I  E
Sbjct: 412 EKYPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENEYKLLSIIKEE 471

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530
           + E+KE ++            CE+   +    +  M  KE   + IS++G+I        
Sbjct: 472 LSELKEKYTSPRK--------CEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDSEF 523

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS-GR 584
           R+ K     +   +  E D ++    A+T D I+    +G     K Y LP G+  S GR
Sbjct: 524 RTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSKGR 583

Query: 585 GHGEAIQL 592
                +QL
Sbjct: 584 SINNVLQL 591


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48
           D + N    +E+N    +L FA               + E +L YA+S I  RA+PD+RD
Sbjct: 216 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 275

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  R
Sbjct: 276 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 335

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG++DGD AAA R+TEARMT++   +L+ +++D +DF D Y+  + EP V 
Sbjct: 336 YPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 395

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT
Sbjct: 396 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 455

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
            G+I+  +  I  +Y  GRG  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAE
Sbjct: 456 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 514

Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           L+  K+I  + D+RDE++    VR+V+  + +  +  +++ +++  + ++T F +NM  L
Sbjct: 515 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 573

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             GR P+++ L   L  +L H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ 
Sbjct: 574 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 632

Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR  D  K  M S   RF L+E Q  AIL++RLR L  LE  +I++E + LL    ++++
Sbjct: 633 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 692

Query: 464 LLNSGKQQWNQIACEIREVKEIF 486
           +L   +     +  E+ E+++ F
Sbjct: 693 ILADEEVLLQLVRDELTEIRDRF 715


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGETIQTIINVQQDR 612


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H+ EV+
Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQTEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN   + + +  ++++F L+E Q  
Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+A    +  +L+  ++    I  E+ EVK  F  +
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGDA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            GE+IQ +I++  ++    A+++ +T K LV
Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRKGLV 620


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 370/609 (60%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   ++ KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M ++A+ ++  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A ID+ +I +E L+E++  PDFPTGG I    + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  C+VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KAVFEEV-QGRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  GR P+++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE D+L+   E +  +L+  +++   I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQIIKDELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I        ++     V   A 
Sbjct: 477 -GDERRSVIEYAGGDMSI--EDMIPNEKVVITISHAGYIKRTPLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          ++  +  G+      + +P G+  S    G AIQ LI++  
Sbjct: 534 TTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTS---KGRAIQNLINIEP 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DKVKAFI 598


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/626 (39%), Positives = 355/626 (56%), Gaps = 66/626 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G ++  ++KKSAR+VG+VIGK
Sbjct: 21  MQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELGNEWNRSYKKSARVVGDVIGK 80

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE RMT++A  +L 
Sbjct: 81  YHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDSAAAMRYTEVRMTRLASELLA 140

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V F   Y+    EP V P+K+PNLL NG+SGIAVGMAT+IP HN+ E+ +A  A
Sbjct: 141 DIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAVGMATNIPPHNLGEVIDATCA 200

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE+    L++YI GPDFPTGG I   +  IV  Y  GRG   +RA+  +E    G 
Sbjct: 201 LIDDPELDPRALMQYIPGPDFPTGGSI-HGQAGIVSGYETGRGSVIIRAKTVIETRKDGK 259

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V E+PYQV K++L+E+IAEL+  K++  + D+RDES  +   V+    R    D++
Sbjct: 260 ETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDESDREGMRVVIEIKRDHQADVV 319

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  + M++ F +N   L  GR P  + L   L  +L HRREV+ RR+ F +     
Sbjct: 320 LNQLFKHTAMQSSFGINALALVDGR-PVTLSLKAFLVAFLKHRREVVTRRTIFELNKAQA 378

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN----------------EDKPKPVMVSR--------- 420
           R  IL+GL +A  NID IIA+IR                 E  P   M++R         
Sbjct: 379 RAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERWERGPVEAMLARALGENDVRS 438

Query: 421 -------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                  ++L+ +Q  AIL++RL  L  LE  +I  E + +L E   +  +L S     +
Sbjct: 439 AQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEEILKEIAYLKGILASDGVLMD 498

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEV----SRADKATLQQAMIEKEPITVVISNRGW 529
            I  E+ E+KE ++       RRT   E     S AD       +I +E + V +S+ G+
Sbjct: 499 VIRQELLEIKERYANP-----RRTLIVEAVGDFSIAD-------LIPEEEMVVTVSHGGY 546

Query: 530 IRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           I+   S +           SA   K+ D ++    A T D I L +  G     K Y +P
Sbjct: 547 IKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGRVFKLKVYEIP 606

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +G+ LS    G+AI  L+ L   + +
Sbjct: 607 SGSRLS---RGKAIVNLLQLEEGEKV 629


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/733 (35%), Positives = 405/733 (55%), Gaps = 51/733 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARI 78
            SL    + RYL YALS I  RA+PD+RDG KPV RRI++AM  ++ L   A ++KSA +
Sbjct: 36  TSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAAV 95

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD++VRLAQ FV R PLI+G GNFG++DGD+ AA RYTEA++  
Sbjct: 96  VGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLRP 155

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  + +  VDFR  Y+    EP+V PS+FPNLL NG+ GIAVGMATSIP HN+ E
Sbjct: 156 LALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLGE 215

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A +ALI+N E++  +LL Y+ GPDFPTGG +  +++ +   Y  G+G  ++R  W +
Sbjct: 216 VIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQL 275

Query: 259 EEVG--RGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           EE    RG+   IV+T IPY +++  ++EKIAE+I++K++P L D+RDES  +VRIV+  
Sbjct: 276 EEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGEVRIVMEL 335

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRRE 370
           K R  D  L+M  ++  + +     +N+  L     +    P+ + L  IL ++L  R  
Sbjct: 336 K-RGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRYA 394

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
            + RR  F +  + RR+ IL+G    +  +DE+I IIR  +        ++ RF+L E Q
Sbjct: 395 TVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNEEQ 454

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+L  L +LE   ++ +L    AE ++I+ LL S  ++W  +  E+ E+K  + 
Sbjct: 455 TDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYG 514

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +     +RRT    V   D+   Q +  I  E   V++S +GW++ ++    DL++   +
Sbjct: 515 E-----KRRTKV--VGSIDEPEYQAEDFIVAEDANVILSAQGWVKRVREVK-DLASTRIR 566

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDS+  A+   T   +   S  G  Y     ++    G+G+ +Q L  L   + ++   
Sbjct: 567 EGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALM 626

Query: 607 VYDSTCK----------------LLVVSSKGNAFIVE-ESEIIANTRKGKTFLKVSSEEK 649
            +D                     L ++  G  F          +TR G+ F K++  ++
Sbjct: 627 SFDPRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDE 686

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG----------GI 697
           +  V  V G D V     +   L  +++++  +S  GKG  +    +G          G 
Sbjct: 687 VLFVHAVDGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGP 746

Query: 698 SDVICFKICEGLT 710
           SDVI  +  +G T
Sbjct: 747 SDVITVETEKGKT 759


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 358/609 (58%), Gaps = 36/609 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K + L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    A K
Sbjct: 6   KENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+ +   L+E I GPDFPTGG+++  +  I ++Y  G+G   VR
Sbjct: 186 HNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D   V+
Sbjct: 245 AKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ ++T F  NM  +  G VP+V+ L  IL+E+L H+  V+ 
Sbjct: 305 IDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEIVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+++  +  + R  IL+GL IA  +IDEII IIR     D  K  ++  + L+E Q  A
Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIETYGLSEKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I++E   L+A    +  +L + ++    I  E+ EV+E F  + 
Sbjct: 424 ILDMRMVRLTGLERDKIEAEYTELMALIADMADILANPERVHTIIETELLEVQERFGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
               RRT                  E   IT  ++++G+I+ L S            +  
Sbjct: 483 ----RRTELLVGEVLSLEDEDLIEEEDIVIT--LTSKGYIKRLPSSEFKSQRRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGHG 587
           +   + D ++  +   T D +L  + +GK Y                +P  NLL G   G
Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLL-GVDSG 595

Query: 588 EAIQLLIDL 596
           E +Q +I++
Sbjct: 596 ETVQAVINV 604


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 410/747 (54%), Gaps = 69/747 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708
           R   GVR    K  G   V+   I  G
Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEI YQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/615 (39%), Positives = 373/615 (60%), Gaps = 40/615 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L   
Sbjct: 3   NLFENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA 
Sbjct: 63  VAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            ++RA+  +E   +    IV+ E+PYQV K+RLIE+IA+L   K+I  + ++RDES  E 
Sbjct: 242 VKIRAKHHIESKSKKD-VIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + SRF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSRFGLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+   ++++ +L S  +    I  E+ E+KE 
Sbjct: 419 IQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELILRSEDRLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS       RRT   E+  +      + +I  EP+ V I++ G+++ +   S +      
Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYERQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G   S    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583

Query: 589 AIQLLIDLNHNQDIV 603
           A+  LI+L  ++ I+
Sbjct: 584 AVVNLINLRADEKIM 598


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/636 (38%), Positives = 371/636 (58%), Gaps = 38/636 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  +KK
Sbjct: 4   DKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG+IDGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PN+L NG SGIAVGMAT+IP  
Sbjct: 124 RMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A+I+NPEI++++++E+II PDFPTGGII    E + ++YR GRG   +RA
Sbjct: 184 NLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIY-GYEGVKQAYRTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + G   IVVTE+PYQV K RLIEKI +L+  K+I  + DIRDES  D   ++
Sbjct: 243 RAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++  ++  + M+  F + +  L  G VP+V+ +  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLTIKEMMEAYILHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + + A +++  IL+GL I   N+DE+I+ IR   N    +  ++ RF+LTE Q  A
Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMERFALTEVQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I ++    LA  E++  +L + ++Q   I  E+  VK +F    
Sbjct: 422 ILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANPERQMEIIKEELLRVKAVFGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + +++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGEFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HGE 588
              K  D ++    A T + IL  ++ G     K Y +P AG    GR          GE
Sbjct: 534 AQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTARGRSLANIMELQKGE 593

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            I+  I++    D +  F+  +T + L+  ++  AF
Sbjct: 594 TIRAYINVKTFDDPL--FIVMATARGLIKKTEIEAF 627


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 374/628 (59%), Gaps = 53/628 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G D+   F+
Sbjct: 9   DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD AAA RYTE
Sbjct: 69  KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAVGMATSIP 
Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  LALI+N +I I++L+++I GPDFPTGG+I+  +E I   Y +GRG F++R
Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKIR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
               VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES  E +R+ 
Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +N  ++P+ +   ++  + +E+ F  N   +  G+ P++  L   L  +L  R +V+
Sbjct: 308 IDLRN-GVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICNLKEFLTNFLTFREDVV 365

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420
            +++ F ++  + R  IL GL ++  N+D+II IIR+   P    K ++ ++        
Sbjct: 366 IKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        +SL++ QV AIL LRL+ L  L   +I+ E+  L    +    ++NS
Sbjct: 426 LISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKIINS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K+  N I+ E++ +KE F+    + RR      +   D     +  I+KE + + ++ +
Sbjct: 486 KKELLNVISEELKTIKEKFA----VPRRTKIIDAILNYD----IEETIQKESVIITVTLQ 537

Query: 528 GWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I+     SV          S +  ++ DS+   L  +T   +L  ST+G     KA+ 
Sbjct: 538 GYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWK 597

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +P G+  S    G+++  ++ L ++Q I
Sbjct: 598 IPEGSTTS---KGKSLFNILPLKNHQSI 622


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/701 (36%), Positives = 381/701 (54%), Gaps = 70/701 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ +MSE G  F  A+K
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +VA  +L  +D+D V+F++ Y+  + EP+V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A+I++P I  E LLE + GPDFPTG +I+  R         GRG   +R
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALII-GRAGSRSGLMTGRGSVIMR 278

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           ++  +EE+  G   +V TEIPYQV K+ +IEKIAEL+  KRI  + D+RDES  D VR+V
Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R   P++++  +F  + ++T F +NM  L+ GR P+++ L  IL+ ++  R EV+
Sbjct: 339 VEVK-RDASPEVVLNQLFRYTQLQTSFGMNMLALNSGR-PELLSLKAILQAFIIFREEVV 396

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------- 417
            RR+ F +     R  +L GL +A  NIDE+I IIR+   P                   
Sbjct: 397 ARRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLS 456

Query: 418 --------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                         V    L+E Q  AIL+LRL+ L  L   +I  E   L         
Sbjct: 457 LINLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLD 516

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L+S  +    I  E+R V+E F+       RR+ F E   A+     +A IEKE + V+
Sbjct: 517 ILSSRPRVMEIITEELRVVREEFAIP-----RRSQFIE---AELDMDDEAFIEKEDMVVM 568

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
            ++ G+         R+        S +  KE D++     A+T   +L  S+ G     
Sbjct: 569 FTHGGYAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKT 628

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624
           K + +P G   S    G+A+  L+ L+  + I +           +   +L  +  G   
Sbjct: 629 KVWRMPLGTPQS---RGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVR 685

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
             + S+     R GK  +K+          +V G    +VG
Sbjct: 686 RNKLSDFTQVNRNGKIAMKLDE-------AQVAGSDDGIVG 719


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 275/776 (35%), Positives = 429/776 (55%), Gaps = 66/776 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL     ++
Sbjct: 5   EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LIDNPE S+ +L+  I GPDFPTG  I+     I  +Y  GRG   +R
Sbjct: 185 HNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVIR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+  +EE   G   I+ TEIPYQV K+RLIE IAEL+  K+I  + D+RDES  D +RIV
Sbjct: 244 AKSNIEE-ENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K +  +P++++  ++  + ++  F + M  L +    +V+ L  +L  ++  ++EV+
Sbjct: 303 IELK-KDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYVDFQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q  
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFALSEKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  +   
Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLEVIKNELLEIKAKYGDE 480

Query: 490 TDLGRRRTT----FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
                RRT+      E++  D       +I++E + + ++  G+I+ + +          
Sbjct: 481 -----RRTSIEQDMNEINIED-------LIQEEDVVITLTKSGYIKRISADVYSAQRRGG 528

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             + A+  KE D +   +   T   +L  +  G+ Y L A  +  +GR   G  I  LI 
Sbjct: 529 RGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIA 588

Query: 596 LNHNQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLK 643
           +  ++ I T           +++  T + +V  +  N F  + +   I  N R+    LK
Sbjct: 589 IEPDEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK 648

Query: 644 VSSEEKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
                     VK+T GD +V  V +N   L F+   +  M R   GV+  + K   I+  
Sbjct: 649 ----------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKGDDIA-- 696

Query: 701 ICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +C  I    E L  I   G       N+    +  RGGVG +  K   ++GK + +
Sbjct: 697 VCMDIAVDEEELLVISENGFGKRTPVNEY--KVQHRGGVGLITYKISEKTGKLVGA 750


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 374/628 (59%), Gaps = 53/628 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G D+   F+
Sbjct: 9   DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD AAA RYTE
Sbjct: 69  KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAVGMATSIP 
Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +  LALI+N +I I++L+++I GPDFPTGG+I+  +E I   Y +GRG F++R
Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKIR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
               VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES  E +R+ 
Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +N  ++P+ +   ++  + +E+ F  N   +  G+ P++  L   L  +L  R +V+
Sbjct: 308 IDLRN-GVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICDLKEFLTNFLTFREDVV 365

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420
            +++ F ++  + R  IL GL ++  N+D+II IIR+   P    K ++ ++        
Sbjct: 366 IKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        +SL++ QV AIL LRL+ L  L   +I+ E+  L    +    ++NS
Sbjct: 426 LISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKIINS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K+  N I+ E++ +KE F+    + RR      +   D     +  I+KE + + ++ +
Sbjct: 486 KKELLNVISEELKTIKEKFA----VPRRTKIIDAILNYD----IEETIQKESVIITVTLQ 537

Query: 528 GWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I+     SV          S +  ++ DS+   L  +T   +L  ST+G     KA+ 
Sbjct: 538 GYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWK 597

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +P G+  S    G+++  ++ L ++Q I
Sbjct: 598 IPEGSTTS---KGKSLFNILPLKNHQSI 622


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/662 (38%), Positives = 386/662 (58%), Gaps = 73/662 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L   YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  +   +KKSA
Sbjct: 8   ITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRNYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF+ RY L+ GQGNFG++DGD AAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +S P + P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I+IE+L++YI GPDFPT  II +S   + E+Y  GRG   +RAR 
Sbjct: 188 SEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDS-GGLKEAYSTGRGKIYIRARS 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +V  G   IV+ EIPYQV K+RL+EKIAEL   KRI  + ++RDES +D +RIV+ 
Sbjct: 247 EIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGMRIVVE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++ L+ ++T F +NM  L  G+ P++M L  IL  ++ HRR V+ R
Sbjct: 307 IK-RDAISEVILNNLYSLTSLQTSFGINMVALHQGQ-PKIMSLKDILSAFVCHRRAVVIR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS------------ 419
           R +F ++    R+ IL+GL IA  NID +I +IR  +   +   V++S            
Sbjct: 365 RVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVFDMK 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LT+NQ  AIL+L+L  L  LE  ++  E  +LL +
Sbjct: 425 QRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSLLEK 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            + + S+L   K     I  E+  ++E ++ S     RRT   E+S   +    + +I +
Sbjct: 485 IKNLISILKDPKCLMRVIRQELLMIQEEYNDS-----RRT---EISSNIENINVENLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S +G+++        + K       A   KE D +   L A+T D +LL S  
Sbjct: 537 KDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNY 596

Query: 570 G-----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSS 619
           G     K Y LPA    + RG  G+ I  L+ L+ N+ I TA +    Y +  ++ + +S
Sbjct: 597 GRIYWMKVYRLPA----ASRGSRGKPIINLLPLDVNERI-TAILPIQNYTTGHQVFMATS 651

Query: 620 KG 621
            G
Sbjct: 652 SG 653


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/642 (36%), Positives = 370/642 (57%), Gaps = 56/642 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N+   ++ ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E G 
Sbjct: 3   TNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGY 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           +F   ++KSARIVG+V+GK HPHGDQS+YD++VR+ Q F  R PLI GQGNFG++DGD A
Sbjct: 63  EFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM + A  +L  +D++ VDF+  Y+E   EP+V P++FPNLL NG  GIAVG
Sbjct: 123 AAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A  A+IDNP ++ E+LLE + GPDFPTGG I+  R  +  ++  G
Sbjct: 183 MATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTIL-GRSGVRAAHLTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
           RG   +R R   E++  G   I+VTE+PYQV K+ ++EKIAEL+  K++  + DIRDES 
Sbjct: 242 RGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESD 301

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              VR+V+  K  ++  ++++  +F  + ++T F +NM  L+ G+ P+++ L  I++ ++
Sbjct: 302 RRGVRVVIEVKRDAM-AEVVLNQLFRYTPLQTSFGVNMLALNGGK-PELLALRPIIEAFI 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-- 420
             R EV+ RR+ F +     R   L GL IA  N+D +I +IR    P+     +++R  
Sbjct: 360 TFREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDW 419

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL+LRL  L  LE  ++  EL  +  +
Sbjct: 420 PAMDVEPLIKLIDEPGRMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQ 479

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+   +L S  + +  +  E+ E+KE ++       RRTT  E          + +I++
Sbjct: 480 IEEYLHILRSRARLFEIMRAELVEMKEAYATP-----RRTTLEENEFEHDI---EDLIQR 531

Query: 518 EPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++N G+I+ +               + +  ++ D +      +T   +L  S+D
Sbjct: 532 EEMVVTVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSD 591

Query: 570 G-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           G     K Y LP G   + +  G+A+  ++ LN  + I T  
Sbjct: 592 GMVYKMKVYRLPLG---TPQARGKAMVNIMPLNEGERITTVM 630


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/603 (38%), Positives = 366/603 (60%), Gaps = 27/603 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KS
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+GK HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   +L  +D++ VDFR  Y+    EP V PS  PNLL NG SGIAVGMATS+P HN
Sbjct: 123 LSPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A+IDNP I++E+++ Y+ GPDFPTGG +  SR+ I E+Y  GRG  +VRA+
Sbjct: 183 LSEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKL--SRKGIQEAYATGRGSLKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES  + +RI + 
Sbjct: 241 VRIEEKGQ-RPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   P +++  ++  + ++T F +N+  +  G  P+V+PL  +++ +L HR+EV+ R
Sbjct: 300 LK-RGASPQVVLNQLYKHTALQTSFTVNLLAIVNGE-PKVLPLLSLMRHYLDHRKEVVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F ++  + R  +L+GLLIA  +IDE+IA+IR   +  + +  ++ RF L+E Q  AI
Sbjct: 358 RSLFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMERFGLSEIQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++  E   L+ E  ++ ++L    + W ++  ++  VKE +  +  
Sbjct: 418 LDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEGRLWAEVKKDLLRVKEKYGDA-- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543
              RRT   E    + +   + +IE EP+ + ++ +G+++ L   S          L A 
Sbjct: 476 ---RRTVITEF---EDSFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAG 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             KE D       A   + +LL +  G+ Y L    L  +  +  G  ++ L+ L   ++
Sbjct: 530 KTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKTLLPLAEEEE 589

Query: 602 IVT 604
           +  
Sbjct: 590 VAA 592


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/697 (36%), Positives = 409/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTSIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++E++ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEIIVRRTRY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++ RF  T+ Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  IT  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI +  ++ I
Sbjct: 541 DDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE    TR GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V +V  N   ++F+ + +  M R  +GV+  + +DG
Sbjct: 658 EVVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/662 (37%), Positives = 381/662 (57%), Gaps = 62/662 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +
Sbjct: 4   VAKEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF D Y+  + EP V P++ PN L NG SGIAVGMAT++P
Sbjct: 124 EIRMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALID+  +++++L+ Y+ GPD PT  II      I E+YR GRG   +
Sbjct: 184 PHNLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAII-NGVAGIREAYRTGRGRMVI 242

Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   EE  R G   ++VTE+PYQV K+RL+EKIA L+  KRI  + ++RDES +D   
Sbjct: 243 RARCEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R   P++++ +++  + +E+   +NM  L+ G+ P++  L  +L  +L HRREV
Sbjct: 303 VVIELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQ-PKLHSLRDVLDAFLRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------- 420
           + RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P   K  +++R        
Sbjct: 362 VTRRTVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGI 421

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q  AIL+LRL+ L  LE+ +I  E  +
Sbjct: 422 TEMLQRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRD 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++ ++L SG +    I  E+  +KE ++        R T    +R D  TL+  
Sbjct: 482 LLGSINELLAILGSGDRLMAVIREELLAIKEHYADP------RRTEITANRVD-LTLED- 533

Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILL 565
           +I+ E + V +S+ G+ +S  L S+          +A   K+ D +     A+T D +L 
Sbjct: 534 LIQPEDVVVTLSHGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLC 593

Query: 566 LSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSK 620
            S+ GK Y L    L  G RG  G+ I  L+ L+  + I   V+   +D    + + + K
Sbjct: 594 FSSHGKCYWLKVYELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFDDQHFVFMATRK 653

Query: 621 GN 622
           G 
Sbjct: 654 GT 655


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
 gi|332310340|gb|EGJ23435.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A]
          Length = 842

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++    
Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS +     +  
Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   E D ++  +   T D +L  +  GK Y
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 243/659 (36%), Positives = 393/659 (59%), Gaps = 35/659 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+   +A +KS+
Sbjct: 15  IDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 74

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGE +G  HPHGD ++YD+LVR++Q F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 75  SVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 134

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + ++E +L  ++++ VDF   Y++   EP V P+  PNLL NG+SGIAVGM+T++P HN+
Sbjct: 135 SPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVGMSTNVPPHNL 194

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A + LID+PE SI  L+E++ GPDFPTG  IV  RE+I  +Y  GRG  RVRA +
Sbjct: 195 REVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIV-GREAIHSAYTTGRGRLRVRAEF 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
             E+  +    IV+TE+P+Q  KSRL+E+IAE +   +I  + D+RDES  D +RI +  
Sbjct: 254 EREQADKRER-IVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDRDGIRIAIDL 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  + D++ E+  +   +E  F + +N+  +   PQV+ L   L+ ++ HR++V+ RR
Sbjct: 313 K-RGANADVV-ENQLLEHHLERTFGV-INLALVDGQPQVLDLKETLEHYVEHRKDVVRRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDK--PKPVMVSRFSLTENQVDAIL 432
           S + +   + R  IL+G L A  N+D ++ +IR  ED+   K  +   F  +E Q + I+
Sbjct: 370 SEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEALSDEFDFSEAQAEHIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  LE  +I  E D L+ E E+++++L +  +    I  E+RE++E +      
Sbjct: 430 RMQLGSLTSLERNEIDEEYDALVEEIERLETILANESELLGVIKEELREIREEYGDD--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
             RRT+  E        L + +I +E   ++++   +++ +   + D        +   +
Sbjct: 487 --RRTSIIE---GGDTVLHEDLIPEEDSLILVTEDDYVKRMPVSAFDPQGRGGKGIIGAN 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KEGD +     A+T D +L  +  GKAY +   ++  +S    G++   ++DL+ ++++
Sbjct: 542 LKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEEL 601

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            TA V    +D    L +V+  G    V+ +E  A  R   + L  +S E+   +V VT
Sbjct: 602 -TAVVNTDDFDDEEFLTMVTENG---YVKRTEASAFERVRSSGLIAASLEEGDRLVDVT 656


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 363/572 (63%), Gaps = 22/572 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      KKSA
Sbjct: 17  VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 77  RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 137 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG   +RA+ 
Sbjct: 197 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV   +  I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 256 TIEEVNNKAR-IIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + +++ F + +N+  +   P+V+ L  +L  +L H+R V+ RR+
Sbjct: 315 RRDVNPNVVLNNLFKHTALQSNFGI-INIALVNGEPKVLNLKEMLYYYLEHQRVVIRRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR+    D  +  ++ +F L+ +Q  AIL+
Sbjct: 374 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 433

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +       
Sbjct: 434 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 489

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   E++  + A   + +I +E + + I++ G++        RS +     +  +  
Sbjct: 490 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 545

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           K  D ++     ++   ++  +  GK Y L A
Sbjct: 546 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKA 577


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/702 (36%), Positives = 400/702 (56%), Gaps = 40/702 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   L++ YL Y++S I  RA+PD+RDG KP  RRII+AM E+ L  G+ F+K 
Sbjct: 6   NIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHFRKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+Q VY +LVRLAQP++ RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 66  AKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++   +L  +++D V+FR  Y+E   EP VFP++FPNLL NG+SGIAVGMAT++P HN
Sbjct: 126 LQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A +ALIDNP++    LLEYI GPDFPTGG I+ + E I E +  GRG   +R  
Sbjct: 186 IGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGT-EGIREYFETGRGKIIMRGE 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +      I++  IPYQ+  S+LIE++ EL+  K+I  + DIRDES  D +RIV+ 
Sbjct: 245 TEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIVIQ 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R+ D  ++   ++  + +++ F + +N+  +  VPQV+ +  +L+ ++  R EV+ R
Sbjct: 305 VK-RNHDAQVVRNLLYKYTQLQSTFGV-INLCLIDGVPQVVNMKEMLQNFIDFRHEVVLR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           R+ F ++    R+ IL+GL IA  N+DE+IA+IR    P    V    +F L+E Q  AI
Sbjct: 363 RTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFGLSEIQAKAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I++E   LL    ++  L+   + + N I  E  E+++ F+    
Sbjct: 423 LDMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEIRDKFAD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
             +R TT         +   + +I  E + V I++ G+++ L   +          LSA 
Sbjct: 480 --KRLTTIIPAPAG--SFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQARGGKGLSAS 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           + KE D ++    A T   ILL +  G  Y L    +   S    G+AI  L+ L    D
Sbjct: 536 NLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVNLVKLAEG-D 594

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLV 653
            + AFV    +     +++ +  G   +V+++ + A +      +K       +E +   
Sbjct: 595 RIKAFVTLKDFHPEQNIVMCTRNG---LVKKTPLTAFSHPRSIGIKAIKLREGDELIDAR 651

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691
           +   GD + +   + K   FS  +I  M R     KG+RL++
Sbjct: 652 ICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRN 693


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    L  ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/798 (34%), Positives = 443/798 (55%), Gaps = 86/798 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  ++KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRMEKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  PVV P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LA +DN +I+I++L+E+I GPDFPT  II   R  I+E+YR GRG   +RAR+ +E
Sbjct: 191 VNGCLAYLDNSDITIDELMEFIPGPDFPTAAII-NGRAGILEAYRTGRGRIYIRARYEIE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           +  + S   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES+++   V+    R
Sbjct: 250 QDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMRVVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + D+LM ++F L+ +ET F +NM  L  G  P+++ L   ++ ++ HRREV+ RR+ +
Sbjct: 310 GENADVLMNNLFALTPLETVFGINMVALINGE-PKLLNLKDCIECFVRHRREVVTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409
            ++    R  IL+G  +A  NID +IA+I+                              
Sbjct: 369 ELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTGMLERAG 428

Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           ED  +P        +    + L+E Q  +IL+LRL+ L  LE  +I  E  +++ +  ++
Sbjct: 429 EDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSIIEQIAEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L + ++    I  E+  V+E F      G  R T    S+ D       +I +E + 
Sbjct: 489 LEILQNPERLMAVIREELEAVREEF------GDVRVTEITASKRDLTIAD--LIAEEDMV 540

Query: 522 VVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S++G+ ++  L+++          +A   ++ D ++  L A++ D IL  ++ G   
Sbjct: 541 VTLSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLY 600

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
             K Y +P  + +S    G  I  ++ L  N+ I T      Y +   + + + +G    
Sbjct: 601 WLKTYEIPQASRIS---RGRPIVNILPLAENERITTMLPVREYTADHYVFMATRQGT--- 654

Query: 626 VEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEM 681
           V+++ +   +R +    + ++ +E   L+     D    V +   + K + F+ D +  M
Sbjct: 655 VKKTPLENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR-SYNR----SENDLLGWLGKRGG 735
            R  +GVR      G    V+   I +   +I +A R  Y +    SE  + G    RGG
Sbjct: 715 GRTARGVRGIRLAQG--QTVVSLIIPQEDAYILTASRKGYGKRTAVSEFPVYG----RGG 768

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  +   R+G  +S+
Sbjct: 769 QGVIAIQCSERNGDLVSA 786


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 262/707 (37%), Positives = 393/707 (55%), Gaps = 71/707 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSAR+V
Sbjct: 11  INIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL++N E++I++L++ I GPDFPTGGII   R  I+++YR GRG   VRAR  +E
Sbjct: 191 VDGCLALMENSELTIDELIQLIPGPDFPTGGII-NGRSGILDAYRTGRGKIYVRARTEIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   I+VTE+PY V K+RL+EKIAEL+  K+I  +  +RDES +D   V+    R
Sbjct: 250 TDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++  + M+  F +NM  L  G+ P+ + L  IL  ++ HRREV+ RR+ F
Sbjct: 310 GELTEVMLNNLYTHTQMQNVFGINMVALVNGQ-PKTLNLKEILAAFIDHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL IA  NID +I +I+N   P   K  +V+R               
Sbjct: 369 ELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLERAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LTE Q  AIL+LRL  L  LE  +I  E   LL E  ++
Sbjct: 429 GDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGEIAEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+  VK  F       +RRT   E+  A      + +I  E + 
Sbjct: 489 LRILASPERLMEVIREELEFVKSQFGD-----KRRT---EIQAASIEINMEDLITPEDVV 540

Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++        + +      +A   K+ D ++  L A+T D IL  ST GK Y
Sbjct: 541 VTLSHEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVY 600

Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEE 628
            L    L   S    G  I  L+ L+ N+ I        YD    +   +  G    V++
Sbjct: 601 WLKVYQLPEASRTARGRPIINLLPLDENERITAILPVKSYDDDKYVFFATGDGT---VKK 657

Query: 629 SEIIANTRKGKTFLK-VSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           +E+ A +R   + ++ ++  E   L+       VA+   N ++++FS
Sbjct: 658 TELSAYSRPLSSGIRAINLNEGDSLI------GVAITDGNSEIMLFS 698


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 369/618 (59%), Gaps = 43/618 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V L   +   +L YA+S I +RA+PD+RDG KPVHRRI++ M E+G+     F+KSA
Sbjct: 10  VTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITPDKPFRKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 70  RMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +DF+D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 130 SKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L+ NP+ S+  L+E + GPDFPTGGI++  + +I  +Y  G+G   +RA+ 
Sbjct: 190 TEVISALHILMKNPDASLADLMEALPGPDFPTGGIVM-GKAAIRRAYETGKGTITLRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   IV TEIPY V K++LIE+IAEL   KRI  + D+ DE+      ++   
Sbjct: 249 DIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTGMRIVIDV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F +NM  +  G  P+V+ L  IL+ +L  + EV+ RR+
Sbjct: 309 RRDASAEVILNNLYKMTLMQTSFGINMLAIVNG-APKVLGLKAILQYYLEFQLEVIRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDEII IIR     D  K  +++RFSL++ Q  AIL+
Sbjct: 368 EFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITRFSLSDKQSQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +++ E  +++A  +    +L S ++Q   I  E+ E++  F       
Sbjct: 428 MRLVRLTGLEREKVEKEYADVMANIKDYKEILASKERQQAIIYEELLEIQNKFGDD---- 483

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
            RRT   E+   +  +L+ + +I +E + V +++ G+I+ L +            +  + 
Sbjct: 484 -RRT---ELMVGEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTSEFKAQNRGGKGVQGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589
             + D ++  +   T D +L  +  GK Y +               P  NLL G  + E 
Sbjct: 540 VHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAKGIPVINLL-GINNNEH 598

Query: 590 IQLLIDL-----NHNQDI 602
           +Q +I++     N N+D+
Sbjct: 599 VQAVINVANPGENDNRDL 616


>gi|332290506|ref|YP_004421358.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
 gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/657 (38%), Positives = 383/657 (58%), Gaps = 61/657 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM+  G D+   ++K
Sbjct: 6   KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RYPL+ GQGNFG+IDGDS AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMTQ+A  +L  +D++ VD++  Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +I+I++L+ YI GPDFPT  II   +  I E+Y+ GRG   +RA
Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAII-NGKRGIEEAYKTGRGKIYIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E   +G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+
Sbjct: 245 KADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ ++  F +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EVKRDAVG-EIVLNNLYALTQLQVTFGINIVALDHGQ-PKLLNLKELIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ + ++    R  IL+GL IA  NID II +IRN   P   K  ++S+          
Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL+ L  LE  +I  E  +LL 
Sbjct: 423 LAAAGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLD 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L+S  +    I  E+ ++K  ++       RRT   E++ +      + +I 
Sbjct: 483 VIAELLHILHSPARLMEVIREELEKIKAQYNDP-----RRT---EITASSGDINLEDLIN 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  S+
Sbjct: 535 PEDVVVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKG 621
            G+ Y L    L  + RG  G  I  L+ L  N+ I            K +V+++ G
Sbjct: 595 RGRLYWLKVYQLPQASRGARGRPIVNLLPLEENERITAILPVKEYAEDKFIVMATAG 651


>gi|332360261|gb|EGJ38074.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK355]
          Length = 826

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   +IDNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVIDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVITIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGENIQTIINVQQDR 612


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 363/572 (63%), Gaps = 22/572 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      KKSA
Sbjct: 9   VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 129 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV   +  I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 248 TIEEVNNKAR-IIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + +++ F + +N+  +   P+V+ L  +L  +L H+R V+ RR+
Sbjct: 307 RRDVNPNVVLNNLFKHTALQSNFGI-INIALVNGEPKVLNLKEMLYYYLEHQRVVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR+    D  +  ++ +F L+ +Q  AIL+
Sbjct: 366 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +       
Sbjct: 426 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   E++  + A   + +I +E + + I++ G++        RS +     +  +  
Sbjct: 482 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           K  D ++     ++   ++  +  GK Y L A
Sbjct: 538 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKA 569


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 336/595 (56%), Gaps = 47/595 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYEQGHTPDKKYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG++DGD  AAYRYTEA+
Sbjct: 77  ARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEAK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDF+  Y+  D EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP ISI++L + I GPDFPTGGII+  R  I  +Y LGRG   +R +
Sbjct: 197 LSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIIL-GRAGIRSAYHLGRGSIMMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGYRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L  GR PQ M L  +L  ++A R  V+ RR
Sbjct: 316 LKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGR-PQTMTLKDLLTIFVAFRERVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  IL GL +A  NIDEII +IR    P   +  ++SR            
Sbjct: 375 TKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMSRDWPARDVEAIIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDKLKIEIADYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + I  E+  VK  F        RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQDIIKTELAAVKAEFGTP-----RRTAIIE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            G+         R+ +      S +  +E D +     A T   +L  S+ G+ Y
Sbjct: 547 AGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NI  II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +++E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL-GRSGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++  R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +    +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  K+ D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 271/766 (35%), Positives = 435/766 (56%), Gaps = 45/766 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +G+    +++
Sbjct: 7   ENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPDKSYR 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+GK HPHGD S+YD+  RLAQ F  RY L+ GQGNFGN+DGDS AA RYTE
Sbjct: 67  KSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAPRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ +++D VDF   Y+E + EP V PS+FPN+L NG++GIAVGMAT++  
Sbjct: 127 MRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A +  I+N +I IE+L++ I GPDFPTG II+  ++ I+++Y+ GRG  +VR
Sbjct: 187 HNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIIL-GKQGIIDAYKTGRGKIQVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE  +G + IV+TEIPYQV K+ LI KIA+L+  K I  + +IRD S+    I +
Sbjct: 246 ARAEIEE-HKGRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTGIKI 304

Query: 314 -FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R  +P++++ +++  + M+  F + +N+  +   P+V+ L  I+K ++ H+R V+
Sbjct: 305 DIDLKRDANPNVVLNNLYKNTQMQITFGI-INLCLVNGEPKVLNLKEIIKYYVDHQRNVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++  + R  I++GL IA  NID II I+R   ++ + K      F LT+ Q  
Sbjct: 364 RRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFGLTDIQGQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++R+R L  LE  +++ E  +L+    K+ S+L + K   N I  E+ E+KE +S  
Sbjct: 424 AILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSILENKKLLDNTIIEELEEIKEKYS-- 481

Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
            DL  RRT        D+  +  + +IE+E + + ++  G+I+ +        +     +
Sbjct: 482 -DL--RRTVLA----PDEGDIDSEDLIEEEDVVITLTEFGYIKRMPEGTYKPQRRGGTGI 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
           SAL  +E D +K      T D IL  +  G+ Y+L A  +   S +  G AI  L++L  
Sbjct: 535 SALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESSRQAKGTAIINLLNLEG 594

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++  VTA +     D    L++ +  G       SE     + G   + ++  + +  V 
Sbjct: 595 DE-FVTAVIPVRNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIGVR 653

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +V +N   + FS   +  M R   GV+    K+    +V+ F+I +   ++
Sbjct: 654 LTSGRDEIMIVTKNGMAIRFSESDVRNMGRTAMGVKSIDLKND--DEVVSFEIPQDDKYL 711

Query: 713 -----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  G+    +E         R GVG L  K   +SGK +S+
Sbjct: 712 LVISENGFGKMTKMTEY----RKQNRAGVGLLTYKATEKSGKLVSA 753


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 359/575 (62%), Gaps = 24/575 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    +++ +  ++S+F L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGDP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                K+ D ++  +   T D +L  +  G+ Y L
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRL 566


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/577 (40%), Positives = 358/577 (62%), Gaps = 24/577 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   EGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I  +Y  GRG   +R
Sbjct: 184 HNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKRAYETGRGKVVIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           ++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  + +RIV
Sbjct: 243 SKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+
Sbjct: 303 IELK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L++       I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------L 540
                RRT   E+   D   +  + +IE++ + + +++ G+I+ L  +++S        +
Sbjct: 481 -----RRT---EIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGI 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            A+  KE D ++  + + T D IL  S  G+ Y L A
Sbjct: 533 QAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKA 569


>gi|332980612|ref|YP_004462053.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
 gi|332698290|gb|AEE95231.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
          Length = 809

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 381/605 (62%), Gaps = 27/605 (4%)

Query: 14  EENVKA--VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           EE  K   V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 4   EEQTKVIEVNLEEEMKHSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLMPDKP 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSARIVG+V+GK HPHG+ +VYDS+VR+AQ F  RYPL+ G GNFG+ID D  AA RY
Sbjct: 64  YRKSARIVGDVLGKYHPHGEAAVYDSMVRMAQDFSMRYPLVDGHGNFGSIDNDPPAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  +D++ VDF   ++E   EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 124 TEARLSRLAMEMLTDIDKETVDFIPNFDETLKEPVVLPSRFPNLLVNGSAGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E  +AA+ +ID+P+ISI++L++ + GPDFPTGGII+  R+ I ++Y  GRG  +
Sbjct: 184 PPHNLKETIDAAIKVIDDPDISIDELMKTLKGPDFPTGGIIM-GRDGIKQAYHTGRGRIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VR +  +E +  G   I+VTEIPYQV K+ L+ +IA L+  K+I  + DIRDES  E +R
Sbjct: 243 VRGKTSIEPLPGGRSRIIVTEIPYQVTKADLVVQIANLVKDKKIDGIADIRDESDKEGMR 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I +  K R ++P++++  ++  + +E  F + M  L +   P+V+ +  +   ++ H+++
Sbjct: 303 IAIDLK-RDVNPNVVLNLLYKHTRLEDTFGIIMLAL-VDNQPKVLNIKQMFYYYIDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427
           V+ RRS + ++  + R  IL+GL IA  +ID I+A+IR+   +   K  ++S+F+L++ Q
Sbjct: 361 VIVRRSRYDLEKAEARAHILEGLRIALDHIDAIVALIRSSKTDQIAKEALMSQFNLSDKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+ E   L++  E +  +L+     +  I  E++ ++  + 
Sbjct: 421 AQAILDMRLRRLTGLERDKIEEEYAQLMSTIEYLRRVLSDEGMVYKIIKDELKTIRNKYG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
                  RRT     S+AD+  ++  +I+ E + + +++ G+I+ L   +          
Sbjct: 481 DD-----RRTQIS--SKADEMEIED-LIQDEEVAITLTHFGYIKRLPLDTYKSQRRGGKG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           ++ +  ++ D ++      T   +L  +  GK Y + A ++  +GR   G AI  L++L+
Sbjct: 533 ITGMQTRDEDFVEHIFVTSTHSYMLFFTNKGKVYMMRAYDVPEAGRQAKGTAIINLLNLS 592

Query: 598 HNQDI 602
             + I
Sbjct: 593 GGEKI 597


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 374/615 (60%), Gaps = 40/615 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI+ AM ++ +   
Sbjct: 3   NLFENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSAR 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG++DGDSAAA 
Sbjct: 63  APYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            R+RA+  +E  G+    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D 
Sbjct: 242 VRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  +++M +++  + MET F + + +    + P+V  L  +L  +++HR
Sbjct: 301 IRVVIELKKDAM-SEIVMNNLYKSTPMETTFGIIL-LAVYNKEPKVFTLPELLNVFISHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELRFGLSP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I  E+ E++E 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKEELSEIREK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +S S  L     ++ E+   D       +I  EP+ V I++ G+++ +   S +      
Sbjct: 479 YS-SKRLTDIEDSYDEIDIED-------LIPNEPMVVTITHNGYVKRVPIKSYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           + G   K+A+  H            T D ++ ++  G     K Y +P G   S    G+
Sbjct: 527 RRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583

Query: 589 AIQLLIDLNHNQDIV 603
           A+  LI+L  ++ I+
Sbjct: 584 AVVNLINLRPDEKIM 598


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/599 (38%), Positives = 373/599 (62%), Gaps = 25/599 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     ++KSARIVG+V+GK
Sbjct: 16  MRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPYRKSARIVGDVLGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY ++V++AQ F  R  L+ GQGNFG++DGDS AA RYTEARM+++A  +L+
Sbjct: 76  YHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYTEARMSKLALELLR 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   ++E   EP+V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + 
Sbjct: 136 DIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN +  +++LL+Y+ GPDFPT   IV   + I ++Y+ GRG  +VRA+  +EE+ +G 
Sbjct: 196 YIDNQDCDVDELLDYVKGPDFPTAATIV-GYDGIKQAYKTGRGKVKVRAKAEIEELPKGK 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IVVTEIPYQV K+RL+EKIA+L+  K++  + D+RDE+  E +RIV+  K R  + ++
Sbjct: 255 QQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRIVIELK-RDTNANI 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  S +E  F + M  +  G  P+++ L  +L  +L H+++V+ RR+ F ++   
Sbjct: 314 VLNNLYKHSQLEDTFSIIMLAIVDG-TPKILNLKQVLGYYLDHQKDVITRRTQFELRKAH 372

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NID +I+IIR+       K  ++  F+L+E Q  AIL++RL+ L  
Sbjct: 373 ARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQAQAILDMRLQRLTG 432

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I  E  +L+A  E ++S+L    +    I  E+  +K   +K  D   RRT   +
Sbjct: 433 LEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIK---AKHED--PRRT---Q 484

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
           +  A+     + + E+E + + +++ G+I+ L + +          ++AL  +E D ++ 
Sbjct: 485 IIPAEGEFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGIAALTTREEDFVRE 544

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +   T   IL  +  G+ Y L A  +  G+    G AI  L+ LN  + +     ++S
Sbjct: 545 LISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKVARTITFNS 603


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 262/721 (36%), Positives = 383/721 (53%), Gaps = 62/721 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ + 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIYE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   IL +RL  L  LE+ ++  E   LL   + + 
Sbjct: 429 EASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R   GV
Sbjct: 661 EFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 688 R 688
           R
Sbjct: 721 R 721


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/764 (34%), Positives = 413/764 (54%), Gaps = 45/764 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +ALI+NP+I I  L++++I PDFPT GII    E + ++Y  GRG   +RA
Sbjct: 184 NLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIY-GYEGVKQAYLTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G +P+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-MPRVLNLKQMMEYYIRHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I  IR   D P  +  ++ +F LTE Q  A
Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEKFGLTEIQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    L   +++ S+L + ++Q   I  E+ +VK+++  + 
Sbjct: 422 ILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANPQKQMQIIREELLKVKDVYGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVAG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDL 596
              K  D ++    A T + IL  +T G     K Y +P AG    GR     ++L    
Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTARGRSLANIMEL---- 589

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
               + + A++    +D    +++ +  G        E     R G   + +   +++  
Sbjct: 590 -QPAEKIRAYINIRNFDEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELID 648

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707
                GDH  ++ ++   ++ F   +I  M R     +G+ L +  +  IS V   +   
Sbjct: 649 ARLTDGDHQIILAKSSGYVVRFPESEIRSMGRTAMGVRGITLDA-DEKCISMVTTKRFDT 707

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            L  +   G        D    L KRG  G +  K   ++G  +
Sbjct: 708 TLLAVTDNGFGKRSRVEDY--RLTKRGARGVITLKAHEKTGAMV 749


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+I  HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P    + +M
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             R                         ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I        R+ +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S    G+A+  ++ L   + I T        DS   L 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/649 (36%), Positives = 395/649 (60%), Gaps = 25/649 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L+  +E+ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+GL    +F KSA
Sbjct: 12  IEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELGLTPDKSFHKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VG  +   HPHGD S+YD++VR+AQ F  RY L+ G+GNFG +DGD  AAYRYTEA+M
Sbjct: 72  NVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDPPAAYRYTEAKM 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L+ + +D V+FR  ++E+  EP V PS+FPNLL NG++GIAVGMATSIP HN+
Sbjct: 132 NKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAVGMATSIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + +IDNP+ +++ ++ +I GPDFPTG +I+  RE+I ++Y  GRG   VRA+ 
Sbjct: 192 GEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIM-GREAIKKAYETGRGKIIVRAKT 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFP 315
            +EE+  G   I+VTEIPYQV K+ L+EKI +L+  K+I  + D+RDES++   I ++  
Sbjct: 251 EIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDESSKKTGIKIVIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++++ ++F  S ++  + + +  +  G  P+++ L  IL+ +L +++EV+ RR
Sbjct: 311 TRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGE-PKILNLVDILQYYLKYQKEVVTRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + F +     R+ +++GLLIA  NIDE+I IIR+  D     ++ RFSL+E Q  AIL++
Sbjct: 370 TKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSLSEVQATAILDM 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L+ LE+ +++ E   L  +    +S+L S ++  + I  EI E+++   K  D+ R
Sbjct: 430 RLRRLQGLEKEKLQDEERELGEKIAYFNSILESEEKLLSIIKEEIIEIRD---KYKDVRR 486

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
            + T        K T     I  E +T+ ++++G+I+ L        K     +S++  K
Sbjct: 487 TQITSMPHEIDIKDT-----IPNEEVTITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTK 541

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           E D ++  L     ++IL ++  GK Y L A  +   S    G  I  L+ L  ++ I T
Sbjct: 542 EEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAKGSNIINLLPLEKDEKIAT 601

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
                  +    +++ + KG       SE   + R+G   + +  ++++
Sbjct: 602 IITTRENEDNAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDEL 650


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I  PDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 379/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE  +E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G    +V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 268/703 (38%), Positives = 398/703 (56%), Gaps = 46/703 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +KKSARIV
Sbjct: 30  VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSARIV 89

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE RM+++
Sbjct: 90  GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRMSKI 149

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 150 AELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNMVEV 209

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               L LIDNP+ +I++L+  I GPDFPT G+I+ + E I ++Y  GRG  ++RAR  +E
Sbjct: 210 INGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARAHIE 268

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++    R 
Sbjct: 269 TMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVIELRRD 328

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++  F + M  L  G+ P +M L  +L+ ++ H+  V+ RR+ + 
Sbjct: 329 SAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQETVITRRTRYE 387

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F LTE Q  AIL+LRL
Sbjct: 388 LAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILDLRL 447

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++   K  D  R  
Sbjct: 448 QRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRD---KYGDKRRTE 504

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEG 548
            TF + S  D   L    I +E + V ++   +I+ +        +   V +  +  KE 
Sbjct: 505 ITF-DASEMDIKDL----IAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKET 559

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606
           D +   L   T   IL  +  G+A+ L +  +  SGR   G AI  L+ +  N + +TA 
Sbjct: 560 DIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAV-ENDERITAV 618

Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHV 661
           +    + +   L + +  G       SE   N RK      V+ +E  +L+ VK T    
Sbjct: 619 IQVKEFRADRYLFLGTKHGVVKKTPLSE-FGNIRKNG-LRAVNLDEDDELIGVKFTD--- 673

Query: 662 AVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              GENR        K + F  D +  M R  +GVR  +  DG
Sbjct: 674 ---GENRIMLGTRGGKAITFPEDGVRSMGRVARGVRGITLADG 713


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN   + + +  ++++F L+E Q  
Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  +
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            GE+IQ +I++  ++    A+++ +T + LV
Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRQGLV 620


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 275/772 (35%), Positives = 428/772 (55%), Gaps = 58/772 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL     ++
Sbjct: 5   EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG  I+     I  +Y  GRG   VR
Sbjct: 185 HNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  E +RIV
Sbjct: 244 AKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++++  ++  + ++  F + M  L +    +V+ L  +L  ++  ++EV+
Sbjct: 303 IELK-RDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q  
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  +   
Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
                RRT   ++ +       + +I++E + + ++  G+I+ + +            + 
Sbjct: 481 -----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D +       T   +L  +  G+ Y L A  +  +GR   G  I  LI +  +
Sbjct: 533 AMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEAD 592

Query: 600 QDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSE 647
           + I T           +++  T + +V  +  N F  + +   I  N R+    LK    
Sbjct: 593 EKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK---- 648

Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
                 VK+T GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +C  
Sbjct: 649 ------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMD 700

Query: 705 IC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I    E L  I   G       ++    +  RGGVG +  K   ++GK + +
Sbjct: 701 IAVDEEELLVISENGFGKRTPVSEY--KIQHRGGVGLITYKISEKTGKLVGA 750


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/639 (37%), Positives = 383/639 (59%), Gaps = 41/639 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L+DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             E+IQ +I++  +Q     +++ +T + +V  +  N F
Sbjct: 591 ENESIQTIINVTKDQ-TADHYLFFATRQGIVKRTNVNEF 628


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+  C + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 262/728 (35%), Positives = 400/728 (54%), Gaps = 72/728 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSA+ V
Sbjct: 23  ISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHENGYTHNKSYRKSAKSV 82

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD+AAA RYTEAR+ + 
Sbjct: 83  GDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDNAAAMRYTEARLDKP 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E +L  +D++ V+F+D Y+ ++SEP V P+++PN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 143 SEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGEV 202

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNPE++   L+EY+  PDFPTG +I+  R   V++Y  GRG   +RA+  VE
Sbjct: 203 IDATLALIDNPELTSSDLMEYVPAPDFPTGAVIL-GRSGAVKAYNEGRGSVIIRAKTRVE 261

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+  G + I++ EIPYQV K+ +IEKIAEL   K+I  +  ++DES    VR+V+  K R
Sbjct: 262 EIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDESDRVGVRVVVELK-R 320

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + ++T F  NM  L+ G+ P+ + L   L  +++ R EV+ RR++F
Sbjct: 321 DATAEVVLNQLFRFTPLQTSFGCNMLALNGGK-PEQLTLYKFLSYFISFREEVVARRTAF 379

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            +     R  IL GL +A  N+DEI+A IR  + P    + +M  R              
Sbjct: 380 ELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRRWPAADISQYISLID 439

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L  +   ++  EL+ L  + +    +L S  
Sbjct: 440 DPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELAGKIQNYLEILRSRD 499

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + I+ E++EV E F+       RRT   E +        + +IEKE + V I+N G+
Sbjct: 500 RIMSIISDELKEVHEKFAVP-----RRTEIIEWA---GDMDDEDLIEKEDMVVTITNSGY 551

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R  K     +  +  K+ D +     A+T   +L  +TDG  Y L    L 
Sbjct: 552 IKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDGMVYKLKTWRLP 611

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN---AFIVEESEIIANTR 636
           L GR   G+AI  ++ ++    I      D+  +       GN    F  +   +  N  
Sbjct: 612 LGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDE-----EWGNLQIVFATDAGGVRRNAL 666

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
              T +K + +  MKL   V+  +V +  E+   L+ +       S GK +R  +     
Sbjct: 667 SDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTT-------SLGKAIRFPT----- 714

Query: 697 ISDVICFK 704
            +DV  FK
Sbjct: 715 -TDVRVFK 721


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/687 (36%), Positives = 411/687 (59%), Gaps = 42/687 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++ M E+GL     +KKSARIVGEV+GK
Sbjct: 12  MKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKSARIVGEVMGK 71

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ++Y++L R+AQ F  RY L+ GQGNFG+IDGDS AA RYTEAR+ ++AE +L+
Sbjct: 72  YHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEARLAKIAEEMLK 131

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D + VDF   ++    EPVV P++ PNLL NG+SGIAVGMAT++P HN+ EI +A + 
Sbjct: 132 DIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHNLSEIVDALIY 191

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+  +++LLE++ GPDFPTGG I+   E +V++YR G+G  +VRA++ V+E     
Sbjct: 192 LIDHPDADVDELLEFVKGPDFPTGGTII-GYEGLVDAYRTGKGKIKVRAKYEVKE----- 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++ EIPY+V KS L++KIA L+   ++  + D++DES  E +RIV+  K R ++P++
Sbjct: 246 DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKVK-RDMNPEI 304

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +   +D+E  + + +N++ +  VP+++ L  ++KE++ HR EVL R+ +++++   
Sbjct: 305 VVNQLLEHTDLEVTYGI-INLVLVDGVPRILNLKELMKEYIRHRMEVLVRKLNYQLRKAK 363

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--TENQVDAILNLRLRSLRKL 442
            R  I++GL+ A   IDE+IA I+     K   ++  SL  +E Q  AIL++RL+ L  +
Sbjct: 364 ERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLVSLGFSEVQAKAILDMRLQKLTSM 423

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE- 501
           E   +  E   L  + + ++SLL S ++++  I  E+ E+K ++       +RRT   + 
Sbjct: 424 EIDALIEENRKLEEDIKNMESLLASEEKRYGVIKEELFEIKNLYGD-----KRRTDIYKG 478

Query: 502 -VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LHFKEGDSLKI 553
            V R D     + +I  E   ++++ +G+IR LK               +++ EGD  + 
Sbjct: 479 AVERRD----IEDLIPNEEAVIILTEKGYIRRLKVDEYRAQGRGGKGVMINYGEGDLPRD 534

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              A+  D ++  + +G+ Y L A  +  G  R  G AI  +I    +  I    + D +
Sbjct: 535 ITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRMLSLNDFS 594

Query: 612 CKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGEN 667
             L  ++  G   IV+ +  E  +N R       +  E+   + VK+T  G+ + +  + 
Sbjct: 595 GYLFFITRNG---IVKRTSLEEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKY 651

Query: 668 RKLLIFSIDQIPEMSRGK----GVRLQ 690
            K + FS D +  M R      G++LQ
Sbjct: 652 GKAIRFSEDDVRVMGRTARGVIGIKLQ 678


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 409/708 (57%), Gaps = 46/708 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N ++ + + V  + L   ++  Y+ YA+S I  RA+PD RDG KPV RRI++AM E+GL
Sbjct: 4   GNGSSDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGL 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                FKKSAR+VGE +GK HPHGD ++Y+++VR++Q F  RYPL+ GQGNFG+IDGD  
Sbjct: 64  RHSQPFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPP 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+  + E +L  +DED VD+   ++E   EP V PS+ PNLL NG++GIAVG
Sbjct: 124 AAMRYTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN++E+ +A   L+DNP++ + +L+ ++ GPDFPTGG+I+  R+ I+++Y  G
Sbjct: 184 MATNMPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIM-GRDGIIDAYTTG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   VR    +E+  RG   IV+T+IPY V KS LIE I + + A ++  + D+RDES 
Sbjct: 243 RGKIVVRGCAEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESN 302

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E +R+VL   +R  DP L++  ++  + ++T F +    L  GR P  + L G+L+ ++
Sbjct: 303 REGIRLVL-ELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGR-PVELNLKGLLQIFI 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HRR V+ RR+ +R++  + R  IL+GL+ A   ID +IA+IR+ + P   K  +V    
Sbjct: 361 DHRRMVVRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELG 420

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  AIL++RL+ L  LE+++++ EL  L+A+  +   +L    +  + +  E+ EV
Sbjct: 421 FTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEV 480

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  +      G  R T  E S  D  + +  + E E + V ++  G+IR +        A
Sbjct: 481 KRAY------GDERRTVIEDS-VDDVSYEDLIPETE-VVVAMTRDGFIRRMPLQDYRCQA 532

Query: 543 LHFK--EGDSLK----IALHA-HTTDRILLLSTD-GKAYTLPAGNLLSGR-GHGEAIQLL 593
              K  +G ++K    ++L A  TT R L L TD G+ ++L    +   + G G+ +   
Sbjct: 533 RGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTF 592

Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           I L+  + +VT    DS  +    + +V+  G A  +   E+   TR G+  L +  ++ 
Sbjct: 593 ISLDEGESVVT--FRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDT 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQI---------PEMSRGKGVR 688
           +   V+ TG      GE++ LL  +  Q          P+    KGVR
Sbjct: 651 IAR-VRFTG------GEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVR 691


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 407/712 (57%), Gaps = 50/712 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 360 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFADD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            GE IQ +I++  +    +   +  T +L VV       + E + I  N   G   L + 
Sbjct: 591 EGETIQTIINVQQDSSDNSYLFF--TTRLGVVKRTS---VTEFANIRQN---GLKALNLK 642

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 643 DEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 694


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 259/766 (33%), Positives = 404/766 (52%), Gaps = 59/766 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D  SN   +V    + +S+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 22  GGDGASNDGAIVPSAHENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 81

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EMGLD   +++KSA ++GEV+GK HPHGD S+YD+LVR+AQ F  R  LI GQGNFG+I
Sbjct: 82  HEMGLDHTKSYRKSAAVIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSI 141

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ ++++++L  +D++ VDF+  Y+    EP+V P+++PNLL NG  
Sbjct: 142 DGDKPAAMRYTECRLARISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAG 201

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  LA+ID P+I + +L+E I GPDFPTGG+I+  R  I  
Sbjct: 202 GIAVGMATNIPPHNLGEVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMIL-GRAGIKS 260

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R +  +E  G     I++ E+PYQV K+ ++EKIAEL+  KRI  +  +
Sbjct: 261 AYETGRGSVIMRGKAHIETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAV 320

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R    D+++  ++  + +++ F  N+  L+ G+ P+ M L  +L
Sbjct: 321 RDESDRQGYRVVIEVKRDAVADIVLNQLYRYTPLQSSFGCNLVALNGGK-PEQMNLVDML 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413
           + ++  R EV+ RR+ F +  +  R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 380 RAFVGFREEVVTRRTKFLLNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLM 439

Query: 414 ---------KPVMV------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                     P++               ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 440 ERRWPAKDVAPLIALIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELN 499

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + AE      +L+S  +  + +  E+ EV+E F+       RRT   E+  +      +
Sbjct: 500 LIGAEIADYLDILSSRARVLDIVRTELGEVREEFANP-----RRT---EIIDSGYEHDDE 551

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +++ G+I        R+        S +  K+ D +      +T   +L
Sbjct: 552 DLIAREEMVVTVTHGGYIKRVPLAAYRAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 611

Query: 565 LLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLL 615
             ST G AY L      L   +G G+A+  L+ L   + I T          +DS   ++
Sbjct: 612 FFSTRGIAYKLKVWKLPLAQPQGRGKAMVNLLPLQAGETITTIMPLPEDEGSWDS-LDVM 670

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIF 673
             +++G     + S+ +   R GK  +K+  E    + V+V    D V +       + F
Sbjct: 671 FATTRGTVRRNKLSDFVQVNRNGKIAMKLDDENDGIIGVEVCSASDDVLLTSSAGYGIRF 730

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +D +   +    V ++  + G    VI   I  G         SY
Sbjct: 731 PVDDVRVFNSRNSVGVRGIRMGASDHVISMAIMRGFAATPEERVSY 776


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 358/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + M+  F +NM  L  G+ P+++ L   L+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYTQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA +NID II +IR    P   K  +VS+           
Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
              +  +L S ++    I  E+  ++E F  +     RRT       A+ A +  + +IE
Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRMY 600


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 275/772 (35%), Positives = 428/772 (55%), Gaps = 58/772 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL     ++
Sbjct: 5   EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG  I+     I  +Y  GRG   VR
Sbjct: 185 HNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  E +RIV
Sbjct: 244 AKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++++  ++  + ++  F + M  L +    +V+ L  +L  ++  ++EV+
Sbjct: 303 IELK-RDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q  
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  +   
Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
                RRT   ++ +       + +I++E + + ++  G+I+ + +            + 
Sbjct: 481 -----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D +       T   +L  +  G+ Y L A  +  +GR   G  I  LI +  +
Sbjct: 533 AMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEAD 592

Query: 600 QDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSE 647
           + I T           +++  T + +V  +  N F  + +   I  N R+    LK    
Sbjct: 593 EKIQTVLTITDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK---- 648

Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
                 VK+T GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +C  
Sbjct: 649 ------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMD 700

Query: 705 IC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I    E L  I   G       ++    +  RGGVG +  K   ++GK + +
Sbjct: 701 IAVDEEELLVISENGFGKRTPVSEY--KIQHRGGVGLITYKISEKTGKLVGA 750


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 356/577 (61%), Gaps = 24/577 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   EGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYDSLVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R
Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKKAYETGRGKVIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           ++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  E +RIV
Sbjct: 243 SKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+
Sbjct: 303 IELK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +
Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQAN 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +   
Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------L 540
                RRT   E+   D   +  + +IE+  + + +++ G+I+ L  +++S        +
Sbjct: 481 -----RRT---EIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGI 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            A+  KE D ++  + + T D IL  S  G+ Y L A
Sbjct: 533 QAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKA 569


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN   + + +  ++++F L+E Q  
Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  +
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            GE+IQ +I++  ++    A+++ +T + LV
Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRQGLV 620


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/647 (38%), Positives = 379/647 (58%), Gaps = 60/647 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G 
Sbjct: 4   SGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 64  DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVG
Sbjct: 124 AAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT  II   R  I+++YR G
Sbjct: 184 MATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 242

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDES
Sbjct: 243 RGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 302

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  +
Sbjct: 303 DKDGMRIVIEIKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420
           + HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P   K  ++SR 
Sbjct: 361 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRS 420

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 421 WALGTVAAMLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHEKL 480

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL + E++  +L S  +    I  E+  ++ +++ +     RRT   E + AD 
Sbjct: 481 LEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYNDA-----RRTEITE-NTADI 534

Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+++        + +      SA   KE D ++  L A+T
Sbjct: 535 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592

Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            D IL  S+ G+ Y +    L  + RG  G  I  L+ L  ++ I  
Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITA 639


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 259/695 (37%), Positives = 398/695 (57%), Gaps = 37/695 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   +   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA
Sbjct: 81  LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  AA RYTEAR+
Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA   +IDNP+++ E+L+E + GPDFPTGGII+ + + I ++Y  GRG   VRA+ 
Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGT-QGIKDAYETGRGSITVRAKV 319

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            VE    G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES  + +RIV+  
Sbjct: 320 HVESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 379

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R   P +++ +++  + +++ F + +++  +  VP+ + L  IL+ ++ H+ +V+ RR
Sbjct: 380 K-RGEVPQVVLNNLYKRTQLQSNFGI-IDLALVDGVPRTLSLREILRCYIDHQIDVVRRR 437

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +    +RV IL+GLL A  NIDEI+ IIR   ++ + K  M  RF L + Q +AIL
Sbjct: 438 TEFDLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHERFDLDDIQGEAIL 497

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L  L    +  E+  L  +    + LL    +    IA E+R++   FS     
Sbjct: 498 QMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSN---- 553

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            +RRT   ++S  D   L  + +I +E + V +++ G++        RS K     +  +
Sbjct: 554 -KRRT---QISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGV 609

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNH 598
             KE D ++    A T D +L  +  GK Y      LP GN  +    G AI  ++ L+ 
Sbjct: 610 SLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTT---KGNAIVNVLSLSE 666

Query: 599 NQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I   +T   + +   L+  + +G       SE     + G   + +   +++  V +
Sbjct: 667 GEKIAAVITTRDFPAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDELVNVRR 726

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR 688
           V  GD V +   + K ++F   Q   M RG  GVR
Sbjct: 727 VHPGDKVILCSSDGKAILFDESQARAMGRGTSGVR 761


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 271/795 (34%), Positives = 429/795 (53%), Gaps = 69/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V   +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  ++
Sbjct: 4   VAREILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A  +L  ++++ VD+ D Y+  +SEP V P++ PNLL NG SGIAVGMAT+IP
Sbjct: 124 EVRMSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +ALID+  + ++ L++Y+ GPD PT GII      I E+YR GRG   +
Sbjct: 184 PHNIREVIDACVALIDDDSLDVDALMQYLPGPDLPTAGII-NGTAGIHEAYRTGRGRMVM 242

Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  +EE  + G   I+V+E+PYQV K+RL+EKIAEL+  KR+  + ++RDES +D   
Sbjct: 243 RARARIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    ++++ +++  + ++T F +NM  L  G+ P+++ L  IL  ++ HRREV
Sbjct: 303 VVIELRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQ-PKLLNLRQILDAFVRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------- 420
           + RR+ F ++    R  +L+GL +A  NID +IA+I+    P   K  ++SR        
Sbjct: 362 VTRRTIFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVT 421

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL LRL  L  LE+ +I  E   LL 
Sbjct: 422 DMLERADATTPDDLSPDVGLGEDGYRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLE 481

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++  +L SG++    I  E+  ++E +        RR+    + +A   TL+  +I 
Sbjct: 482 QIGELIHILESGERLMEVIREELVAIREQYGDE-----RRSEI--IPQALDLTLED-LIT 533

Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568
            + + V +S+ G+ +S  L S+          SA   K+ D +     A+T D +L  S+
Sbjct: 534 PQDVVVTLSHSGYAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSS 593

Query: 569 DGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L  G  +  G+ I  L+ L  ++ I        +D    + + +  G  
Sbjct: 594 HGKCYWLKVYELPQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAHFVFMATHNGTV 653

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                S        G   L + +++ +  V    G   V +V +  K + F   Q+  M 
Sbjct: 654 KKTPLSHFSRPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAMG 713

Query: 683 RG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R     +G+RL+  +      VI   I +    + +    Y +           RGG+G 
Sbjct: 714 RTAAGVRGIRLEPGQ-----RVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGV 768

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G+ + +
Sbjct: 769 ICIQTSDRNGEVVGA 783


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 408/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A    +DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/681 (36%), Positives = 400/681 (58%), Gaps = 50/681 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF   Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLREILGSYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN   + + +  ++S+F L+E Q  
Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGDP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I++  ++    A+++ +T   LV  +    F        AN R+ G   L +
Sbjct: 591 DGESIQTIINVAQDRS-EDAYLFFTTRSGLVKRTSVAEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVG 665
             E+++  V    G+   ++G
Sbjct: 642 KDEDELINVFLTDGNTDVIIG 662


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++++F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 591 EGESIQTIINV 601


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+  C + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+  C + + ++ G 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 412/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLI+  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRIAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I++   +    A+++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V+    D   ++G      I F+   +  MSR   GV+  + +DG
Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMSRIATGVKGVNLRDG 694


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/673 (36%), Positives = 382/673 (56%), Gaps = 57/673 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR
Sbjct: 23  ETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSAR 82

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM 
Sbjct: 83  PVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMD 142

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ 
Sbjct: 143 KPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLG 202

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A LALI+ P++ +E L++YI  PDFPTGG I+  R    ++Y  GRG   +RA+  
Sbjct: 203 EVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQIL-GRGGARKAYLEGRGSVIIRAKTR 261

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPK 316
           +EE+ +  + IV+ EIPYQV KS +IEKIAEL+  KRI  +  ++DES    VR+V+  K
Sbjct: 262 IEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELK 321

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++  ++  + M+T F  NM  L+ GR P+ + L   L  +++ R EV+ RR+
Sbjct: 322 -RDATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLKDFLSSFISFREEVVARRT 379

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410
           ++ ++    R  +L GL +A  N+DE++A IR                            
Sbjct: 380 AYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRL 439

Query: 411 -DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
            D P   M     ++L+E Q  AIL+LRL+ L ++   ++  EL  L A+ ++   +L S
Sbjct: 440 IDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAAKIQEYLDILRS 499

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    I+ E+REVK+ F+       RRT   E++        + +IE+E + V +++ 
Sbjct: 500 RSRIMAIISDELREVKDQFAVP-----RRT---EITDWSGDMEDEDLIEREDMVVTVTSG 551

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I        R+ +     L+ +  KE D +     A+T   +L+ +TDG  Y L    
Sbjct: 552 GYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMVYKLKTWR 611

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEI 631
           L SG     G+A+  ++ ++    I      D      +  +++  +S G+      S+ 
Sbjct: 612 LPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSAGDVRRNALSDF 671

Query: 632 IANTRKGKTFLKV 644
               R GK  +K+
Sbjct: 672 TNVMRNGKIAMKL 684


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/620 (38%), Positives = 374/620 (60%), Gaps = 31/620 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           NI +   ++  ++   ++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EM
Sbjct: 6   NIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKEM 65

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL    A+KKSARIVG+V+GK HPHGD +VY ++VR+ Q F  RYP+I GQGNFG+IDGD
Sbjct: 66  GLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDGD 125

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  + + +L  +D++ VDF   Y+    EPV+ P+K P+LL NG++GIA
Sbjct: 126 FAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGIA 185

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP+HN+ E+ +A + LID+ EIS+ ++++YI GPDFPTG II+  +  I +   
Sbjct: 186 VGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIIL-GKSGIKDYME 244

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA+  +EEV  G   I+V EIPYQV K+ LI  IA+L+  K+I  + D+RDE
Sbjct: 245 KGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDE 304

Query: 305 SAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  D +RIV+  K R  +  +++  ++  + M+  F + M  L   R P+VM +  IL  
Sbjct: 305 SDRDGIRIVIEIK-RDANVQVVLNQLYKHTQMQLSFGVIMLALVNNR-PKVMNVKEILIH 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
            + HR+ ++ RR+ F +Q  + R  IL+GL IA  NID +I II+   +ED  +  ++S+
Sbjct: 363 HIEHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK 422

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LT+ Q +AIL +++R L  L+  +I  E   L+   EK+ S+L   K+  + I  E  
Sbjct: 423 LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEKLRSVLADPKKVLDIIKNEAL 482

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539
           ++K  +      G +R T  + + AD     + +I++E + V +S+ G+I+ +   +   
Sbjct: 483 DIKRKY------GDKRRTQIQAAEADFNI--EDLIQEEEVAVTMSHAGYIKRIPLDTYKA 534

Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHG 587
                  ++A++ +E D ++      +   +L  +T G     + Y +P G   S    G
Sbjct: 535 QHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEIPEGARTS---KG 591

Query: 588 EAIQLLIDLNHNQDIVTAFV 607
           +AI  L+ L   ++ +TA +
Sbjct: 592 KAIVNLLQLQGTEEKITAAI 611


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/639 (37%), Positives = 383/639 (59%), Gaps = 41/639 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L+DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             E+IQ +I++  +Q     +++ +T + +V  +  N F
Sbjct: 591 ENESIQTIINVTKDQ-TADHYLFFATRQGIVKRTNVNEF 628


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 274/730 (37%), Positives = 409/730 (56%), Gaps = 73/730 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYLRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +  +    I  E+  +KE ++     GRR     E++        + +I +
Sbjct: 485 IAALIFILENPDRLMEVIREELVAIKEQYND----GRR----TEITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGRHVFMATASGT- 654

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   + V +   N K++ F   Q+ 
Sbjct: 655 --VKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712

Query: 680 EMSR-GKGVR 688
            M R   GVR
Sbjct: 713 SMGRTATGVR 722


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 276/775 (35%), Positives = 432/775 (55%), Gaps = 55/775 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L   +V+++++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L F
Sbjct: 2   SNLLNNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA +KKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  EI     AL++NP I++ +++E+I  PDFPTGGII   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIF-GKKGIMDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  +E+ G     IV+ E+PYQV K+RLIE +A L+  K I  + +IRDES  D
Sbjct: 241 RIKVRAKTHIEKKGNRD-VIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + M+T F + M  + + + P++  L  ILK ++ HR
Sbjct: 300 GMRVVIELKRDAISEIVLNNLFKQTSMQTTFGIIMLSI-LNQEPRIFGLIDILKHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + ++ RR+ F ++    R  IL+GL  A   ID++I +IR    E+  K  +VS F  +E
Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSEFDFSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  +I+ +RL  L  LE  +I++EL  L+   E ++S+L S       IA E  EV   
Sbjct: 419 IQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSEDVLHGIIAEEFDEVLTT 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           ++      +RRT   +          + +I  EP+ V I++RG+I+ +   S +      
Sbjct: 479 YTT-----KRRTEIEDDY---DDIDIEDLIPNEPMVVTITHRGYIKRVPLASYEKQKRGG 530

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
              +A+   E D ++     +T D +L ++  G     K Y +P G   S    G+A+  
Sbjct: 531 KGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEG---SRTAKGKAVVN 587

Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVS 645
           LI+L  ++ I      T F  D   K LV  +K    IV+ + +   +N R       V 
Sbjct: 588 LINLQADEQIQSIIPTTDFSED---KSLVFFTKNG--IVKRTNLSEFSNIRSNGVRAIVL 642

Query: 646 SEEKMKLVVKVTGDHVA---VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----I 697
            +    +  K+    +    +V +  + + F I++  E  R  +GVR   +K  G     
Sbjct: 643 DDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTREQGRSTRGVRGIKFKHEGDEVVD 702

Query: 698 SDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +++I     E L   +   G+  +  E      L  RGG G +  K   ++GK++
Sbjct: 703 ANIIASDDQEILIVAEKGIGKRTDAGEY----RLTNRGGSGVIAMKMTAKTGKYI 753


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 307/446 (68%), Gaps = 5/446 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSEL 451
            Q  AIL++RL+ L  LE  +I+  +
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQNI 446


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 363/602 (60%), Gaps = 29/602 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V ++  ++  Y+ Y++S I  RA+PD RDG KPVHRRI+H+M+E G+    A+KKSA
Sbjct: 24  VVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDSAAA RYTE RM
Sbjct: 84  RVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRM 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L+ + +  VDF+  Y+    EP V PSK PNLL NG++GIAVGMAT++  HN+
Sbjct: 144 DKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHNL 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LID+PE  + +L + + GPDFPTGGII+ +   I  +Y  GR    +RA  
Sbjct: 204 GEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGT-SGIKSAYETGRSPIYLRAVT 262

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+    + IVV E+PYQV K+RL+E IA L+  K+I  + D+RDES  +   V+   
Sbjct: 263 EIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIEL 322

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            ++ +P +L+  ++  + +ET F + +N+  +  VP+V+ L  +++ +L HR +V+ RR+
Sbjct: 323 KKAANPKVLLNQLYKQTQLETTFGI-INLALVDGVPRVLNLRELIQIYLKHRIDVISRRT 381

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL +A  NIDE+I +IR     ++ +  ++S F L E Q  AIL+
Sbjct: 382 VFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLISNFDLDEIQAKAILD 441

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L+ L  LE  +I  E + L+     +  +L + ++++  I  E+ E+K+ +      G
Sbjct: 442 MKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDERKYAIIRDEVLELKDKY------G 495

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
             R T  + SR + A   + +I +E + V  +  G+I+++   + ++          +  
Sbjct: 496 DERRTLIQSSREELA--DEDLIPEEEVVVTSTQSGYIKNIPLQTYNMQHRGGRGVRGMET 553

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           KE D++     A T D IL  +  G     K Y +P G   S +  G+AI  L++L   +
Sbjct: 554 KEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRG---SRQSRGKAIVNLLELAEGE 610

Query: 601 DI 602
            +
Sbjct: 611 SV 612


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 371/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN   + + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ +
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADN 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGETIQTIINVQQDR 612


>gi|332360842|gb|EGJ38648.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK49]
          Length = 826

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/679 (37%), Positives = 378/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+I  HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  KE D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T        DS   L V+  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/560 (40%), Positives = 347/560 (61%), Gaps = 22/560 (3%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +KSARIVG+V+GK HPH
Sbjct: 88  FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEARM++VA L+L+G+ +
Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTEARMSKVATLMLEGIKK 207

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E  +A +AL  N
Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALARN 267

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+I +++E++ GPDFPTG +I+ ++  I E+Y  G+G   VR+   +E +  G   I+
Sbjct: 268 PEITIAEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLHNGKSRII 326

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  + +RI++  K   + P++++  
Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ RR  F +     R+ 
Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLKFDLNKAQDRMH 444

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL +A  NIDE+I II++    +     + +RF+L+E Q  AI+++RL  L  L   
Sbjct: 445 ILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSARFNLSEKQTKAIVDMRLGRLTGLAID 504

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +  E+ NL AE E+I S+L+  K     I  E+ E+K  F+       RRT   +   A
Sbjct: 505 SMIEEMKNLSAEIERIISILSDKKLLTELIIDELTEIKNKFADD-----RRTVIDKNLSA 559

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHA 557
             +   + +I K  I +  S +G+++ +        +   V ++ +     D +   +  
Sbjct: 560 --SIDDEDLITKRDIVITTSTKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITT 617

Query: 558 HTTDRILLLSTDGKAYTLPA 577
            T   +L+ +  G+ Y + A
Sbjct: 618 TTHTDLLIFTNHGRVYRIRA 637


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 278/737 (37%), Positives = 421/737 (57%), Gaps = 72/737 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALID P +SIE+L+E+I GPDFPT   IV  R+ I ++Y+ GRG   +RAR
Sbjct: 187 LSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAA-IVNGRKGIEDAYKTGRGKAVMRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 ATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + ++T F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 VK-RGEVGEVILNNLYAQTQLQTSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID IIA+I+    P   K  +VS+           
Sbjct: 364 RTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I SE + LL  
Sbjct: 424 EKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLEL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E++EV E+F      G  R T    S  D +   + +I +
Sbjct: 484 IAALLYILRSPERLMEVIKEELQEVLEVF------GDERRTELNASAVDISL--EDLINE 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           GK Y L      L S +  G  I  L+ L   + I TA +    YD+   +++ +S G  
Sbjct: 596 GKMYWLKVYQLPLASRQARGRPIINLLPLAEGERI-TAILPVREYDADKYVIMATSHGT- 653

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENR-KLLIFSIDQIP 679
             V+++ +   +R +    + V+ ++  +L+ V +T GD+  ++  N  K++ FS DQ+ 
Sbjct: 654 --VKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVR 711

Query: 680 EMSR-GKGVRLQSYKDG 695
            M R   GVR    +DG
Sbjct: 712 GMGRTATGVRGIKLEDG 728


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/606 (40%), Positives = 360/606 (59%), Gaps = 58/606 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  IS+E L+ +I GPDFPT  II   +  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + M+  F +NM  L  G+ P++M L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA  NID II +IR+   P   K  +V++           
Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LLA+
Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  ++E ++ +     RRT   E++        + +I +
Sbjct: 485 IAELLFILRSPERLMEVIREELVAIREQYNDA-----RRT---EITHNSADINIEDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 ENVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 597 GRLYWL 602


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/652 (37%), Positives = 383/652 (58%), Gaps = 42/652 (6%)

Query: 14  EENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +EN K + +    + R  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++GL     
Sbjct: 8   QENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGN+G+IDGDS AA RY
Sbjct: 68  YKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAVGMAT++
Sbjct: 128 TEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNM 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E   A +A IDN EI+I +L+++I  PDFPTG II      + E++  GRG   
Sbjct: 188 PPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIY-GYTGVQEAFETGRGRIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E  +    I+VTEIPYQV K+++IE+ AEL+  K++  + +I+DES +D   
Sbjct: 247 MRAKAEI-EAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIR 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +++   R  +  +++ ++F  + ++T F +N   L  GR PQ++ L  ++  ++ HR EV
Sbjct: 306 IVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGR-PQLLNLRDLIHYFVEHRHEV 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+ F +    +R  IL+GLLIA  ++DE+I +IR+ D P+     ++ +F L++ Q 
Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLSDIQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++ LR L  LE  +IK E + L+   E + S+L+   ++   I  E+ E+KE +  
Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKEKYGD 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 RRTT   V  A+  +++   IE E + + IS+ G+I        R+        
Sbjct: 485 E-----RRTTI--VHSAEDMSMED-FIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGS 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLID 595
                +  D ++  L A   + +L  +  G+      Y +P G  LS    G AIQ +I+
Sbjct: 537 KGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLS---KGRAIQNIIN 593

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +   + I  AF+     K        +   +E + II  T+KG T  K S E
Sbjct: 594 IPKEEKI-KAFIKVKNLK--------DQEYLENNYIIMCTKKG-TIKKTSLE 635


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +
Sbjct: 485 IGELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/681 (36%), Positives = 383/681 (56%), Gaps = 58/681 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 42  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 101

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 102 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 161

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 162 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 221

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 222 VDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 280

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 339

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 340 DATAEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTAY 398

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR+                            D
Sbjct: 399 NLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLID 458

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL LRL+ L +L   ++  EL+ L A+ ++   +L+S +
Sbjct: 459 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRE 518

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+ EV+  F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 519 RIMGIIADELTEVRNSFAVP-----RRTEIVDWS---GDMDDEDLIEREDMVVTVTSGGY 570

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 571 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 630

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D      +  +++  +S G       S+   
Sbjct: 631 QGGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTN 690

Query: 634 NTRKGKTFLKVSSE-EKMKLV 653
             R GK  +K   + E  KL+
Sbjct: 691 VMRNGKIAMKFEDDNEGTKLI 711


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/596 (39%), Positives = 360/596 (60%), Gaps = 27/596 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++   +   +KKSAR+VG+VIGK
Sbjct: 11  LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVVGDVIGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM+++A   L 
Sbjct: 71  YHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRLAGEFLA 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+  L 
Sbjct: 131 DIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+D P   +  ++  + GPDFPTG  I   +  + E+Y  GRG  ++R R  VEE  +  
Sbjct: 191 LLDTPSCPVTDIIGLVKGPDFPTGAAIYGGK-GLTEAYTTGRGTIKIRGRAEVEERKKDY 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +V+ EIPY + KS L+EKIA LI   RI  + D+RDES  + +RIVL  K + + PD+
Sbjct: 250 VSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLK-KGVIPDI 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +ET F +NM V++  R P ++ +  +L+ +L HRR+V+ RR+ F ++  +
Sbjct: 309 VINALYKYTPLETSFGINMLVVADNR-PALLNIKQVLEHFLTHRRDVILRRTRFDLRKSE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NIDE+++IIR   N  + +  ++ RF L+E Q  AIL++RL+ L  
Sbjct: 368 ERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMERFGLSERQAQAILDMRLQRLTN 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E + L+   E + S+L + +     I  EI+E+++ ++       R+T   E
Sbjct: 428 LERQKLIDEYNELIKLIEYLRSILENDEVLRGVIRDEIKEIQDRYATP-----RKTEILE 482

Query: 502 VSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDSLKI 553
               D   +    +I  E + + +S RG+I+  K  +        K        GD    
Sbjct: 483 ----DLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGIAGVATAGDDFVQ 538

Query: 554 ALHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           +  A T  + LLL T+ G+ + LP   +  G+    G  I  L+ ++  + + TA 
Sbjct: 539 SFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 370/611 (60%), Gaps = 40/611 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 8   DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 68  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 128 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 188 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KR+  +  +RDES  E VR V
Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 307 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 365 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFRLSERQSQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 425 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILVKPERVAQIIKEELDEVKRKFGD- 483

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 484 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 537 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 595

Query: 586 HGEAIQLLIDL 596
            GE+IQ +I++
Sbjct: 596 EGESIQTIINV 606


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGETIQTIINVQQDR 612


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVGLSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V+E F      G +R T    + AD     + +I +
Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596

Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           G+ Y++    L    RG  G  I  L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 286/788 (36%), Positives = 438/788 (55%), Gaps = 73/788 (9%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DNI N+N    +++K +++  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MDNIFNTN----QDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQPF  R P + GQGNFG+ID
Sbjct: 57  DLAISSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SG
Sbjct: 117 GDNAAAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H + E+ +  L LIDNPE ++E+++E+I GPDFPT GII   ++ I+E+
Sbjct: 177 IAVGMATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIF-GKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA+  +E+ G     IVV E+PYQV K RLIE+I  L+  K I  + +IR
Sbjct: 236 YRTGRGRVRIRAKTHIEKKGNKD-IIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIR 294

Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES  D +R+V+  K  ++  D+++ +++  ++ME  F + +  +   + P++  L  +L
Sbjct: 295 DESDRDGIRLVIELKREAM-SDIVLNNLYKSTNMEVTFGVILLAIH-NKEPKIFTLIELL 352

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MV 418
           + +L HR+ V+ RR+ F ++    +  IL+GL IA  NIDEIIA+I+     K     ++
Sbjct: 353 QLFLRHRKTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLI 412

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF+L+E Q  AIL++RL+ L  LE  +I++EL  LL E +++  +L S     N I  E
Sbjct: 413 ERFNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEALLNNLIKEE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E+K+ F        +R T             + +I  EP+ V I++RG+I+ +     
Sbjct: 473 LLELKDKFKS------KRITEIVDDYD--DIDVEDLIANEPMVVTITHRGYIKRVPLKQY 524

Query: 539 DLSALHFKEGDSLKIALHAHTTDRI-----------LLLSTDG------KAYTLPAGNLL 581
           +      K G   KIA+  +  D I           L+  TD       K Y +P G   
Sbjct: 525 EKQ----KRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEG--- 577

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG-----------NAFIVE 627
           S    G+A+  LI L  ++ I+       +D T  L   +  G           N   V 
Sbjct: 578 SRTAKGKAVVNLIQLQADEKIMAIIPTTDFDETKSLAFFTKNGVIKRTNLSEFKNIRSVG 637

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV---VGENRKLLIFSIDQIPEMSRG 684
              I  +   G    K+ ++E   L + VT   + +   VG+ R        +I   +RG
Sbjct: 638 VRAITLDDDDGLVTAKIVTQEAKNLFI-VTKKGMCIRFEVGDAR--------EIGRTARG 688

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             G+R +   D  +   + +   E L  +   G     +  +    L  RGG G +  K 
Sbjct: 689 VTGIRFKEENDCVVGAAVIYNDQEELLTVTEKGIGKRTTAEEY--RLQNRGGKGVIAMKL 746

Query: 744 FPRSGKFL 751
            P++   +
Sbjct: 747 TPKTADLV 754


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/730 (37%), Positives = 412/730 (56%), Gaps = 73/730 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYLRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTF 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  VKE+++     GRR     E++        + +I +
Sbjct: 485 IAELIFILENPDRLMEVIREELVAVKELYND----GRR----TEITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGRHVFMATASGT- 654

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   + V +   N K++ F   Q+ 
Sbjct: 655 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712

Query: 680 EMSR-GKGVR 688
            M R   GVR
Sbjct: 713 SMGRTATGVR 722


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 357/611 (58%), Gaps = 63/611 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408
           + F ++    R  IL+GL +A  NIDEII  I+                           
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 409 ---------------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                          N D+P  +  S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D +  ++
Sbjct: 484 ILGQIAELTAILN----DFNLLMAVIREELAQVLQQYGD--GRRTEIIE-SRIDFS--RE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K  D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTL 575
             +  GK Y L
Sbjct: 595 CFTNVGKVYRL 605


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/702 (35%), Positives = 410/702 (58%), Gaps = 38/702 (5%)

Query: 12  LVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           L+EE +     V++   ++  +L YA+S I  RAIPD RDG KPVHRRI++ M ++GL  
Sbjct: 56  LIEEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHH 115

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +AFKKSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA
Sbjct: 116 SSAFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAA 175

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  +L G+ ++ V+F   Y+  + EP V PS+FPNLL  G  GIAVGMA
Sbjct: 176 MRYTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMA 235

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  HN+ E   A +A   NP+IS+ +L+E+I GPDFPTGGII+ ++  I++++  G+G
Sbjct: 236 TTIAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTK-GIIDAFETGKG 294

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
              +R++  +E +  G   I+V+EIPY VQK+ +IEKIA L+  K I  + D+RDE+  +
Sbjct: 295 SISIRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRK 354

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  K ++  P++++  +F  ++++  F +NM  L  G  P+++ L   L+ +L H
Sbjct: 355 GIRIVIEVK-KNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGE-PKLLSLKDALRVYLDH 412

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           ++E++ RR  F ++  + R+ IL+GL IA  NIDE+I IIR    + + +  +  +FSL+
Sbjct: 413 QKEIVIRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQKFSLS 472

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AI+ +RL  L  L   +++ E+  LL     I  +LNS ++  + I  E+ E+KE
Sbjct: 473 EIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKEILNSEQKLIDLIVEELEEIKE 532

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
            +      G +R T  + S A      + +I +  I ++ S +G+++ +           
Sbjct: 533 KY------GDKRLTQID-SYAIANISDEDLIPERNIAIIQSVKGYVKRINLSEYKVQNRG 585

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LI 594
            V  S     E D L   +   T   +L+ ++  K Y + A  +       + I    LI
Sbjct: 586 GVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPESSKQSKGIPFINLI 645

Query: 595 DLNHNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEE 648
            +  ++++V+   A  YD    L+ ++  G   ++++++I    R    GK  + +   +
Sbjct: 646 QIEKDEEVVSILPAQNYDDGKFLVTLTQNG---LIKKTKIEHFQRINTNGKIAMVILEND 702

Query: 649 KMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688
           K+   + +  D   +VG +  K++ F + ++ +  R   GVR
Sbjct: 703 KLVRAMILNNDEEIIVGSSEGKIVRFDLSEVRDTGRKSAGVR 744


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 374/618 (60%), Gaps = 40/618 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F  + ++T F   M  +  G VP+++ +  IL+ ++ H++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFTMLAIQNG-VPKILSVRQILESYIEHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q
Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                  RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K    
Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +     K+ D ++  +   T DR+L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589

Query: 584 RGHGEAIQLLIDLNHNQD 601
               EAIQ +I++  +Q+
Sbjct: 590 E-ENEAIQTIINVTKDQE 606


>gi|332366850|gb|EGJ44591.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1059]
          Length = 826

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/680 (36%), Positives = 384/680 (56%), Gaps = 57/680 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K R
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELK-R 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  S M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR+++
Sbjct: 314 DATAEVVLNQLYRFSPMQTHFGCNMLALNGGR-PEQLTLRRFLTSFLDFREDVIARRTAY 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411
            ++    R  IL GL +A  N+DE++A IR                             D
Sbjct: 373 DLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLID 432

Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            P   M     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S +
Sbjct: 433 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV++ F+       RRT   + S        + +IE+E + V I++ G+
Sbjct: 493 RILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 544

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 545 IKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 604

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 QGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLV 653
             R GK  +K+  +  +KLV
Sbjct: 665 VRRNGKIAMKLPEDGSVKLV 684


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/766 (35%), Positives = 417/766 (54%), Gaps = 49/766 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G   KK
Sbjct: 4   ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+IP  
Sbjct: 124 RMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +ALI NPE+ +  L++Y+I PDFPTGGII    E +  +Y  GRG   +RA
Sbjct: 184 NLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIY-GYEGVRSAYMTGRGKVVIRA 242

Query: 255 RWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + S   IVVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D   ++
Sbjct: 243 RAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+++ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMVYYIKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +   ++R  IL+GL I   N+DE+I+ IR   +    +  ++ RF L+E Q  A
Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E   +LA  E++  +L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSPEKQMQIIREELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDL 596
              K  D ++    A T + IL  +  G     K Y +P AG    GR    A+  +++L
Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAARGR----ALANIMEL 589

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKM 650
              + I  A++    +D    +++ ++ G   IV+++  E  ++ RK         E   
Sbjct: 590 QQGEKI-RAYINIRNFDEPGFIVMATTNG---IVKKTPLEDFSHPRKNGIAAITIDEHDE 645

Query: 651 KLVVKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKI 705
            L  ++T GDH  ++ +N   ++ F   +I  M R   GV+  +  +G   IS V   + 
Sbjct: 646 LLDARLTDGDHQIILAKNSGFVVRFPEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRF 705

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              L  +   G        D    L +RG  G +  K   + G  +
Sbjct: 706 DTALLAVTDNGFGKRSRVEDY--RLTRRGARGVITLKAHEKVGALI 749


>gi|332361161|gb|EGJ38965.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1056]
          Length = 826

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 381/632 (60%), Gaps = 40/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P+K P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ++N +I I++L+++I  PDFPTGGII    E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+V+EIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  GR PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQMLNLKDLIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ K  ++ RF L++ Q  AI
Sbjct: 362 RTKFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIERFKLSDIQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E + +LL     +   I  E+ +++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRTALIKEELEDMRAKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I        ++     V   + 
Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLNEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D L+    A     ++  +  GK      Y +P G   S    G A+Q LI++  
Sbjct: 534 GTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEG---SKTAKGRALQNLINI-E 589

Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKG 621
           + D V AF+         Y ++  L++V+ KG
Sbjct: 590 SDDKVKAFICTQDLKDKDYTTSHNLIMVTKKG 621


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN ++S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 383/639 (59%), Gaps = 41/639 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q  
Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             E+IQ +I++  +Q     +++ +T + +V  +  N F
Sbjct: 591 ENESIQTIINVTKDQ-TAEHYLFFATRQGIVKRANVNEF 628


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/681 (36%), Positives = 384/681 (56%), Gaps = 57/681 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR 
Sbjct: 15  TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  V
Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRV 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 254 EEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELK- 312

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  ++  S M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR++
Sbjct: 313 RDATAEVVLNQLYRFSPMQTHFGCNMLALNGGR-PEQLTLRRFLTSFLDFREDVIARRTA 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           + ++    R  IL GL +A  N+DE++A IR                             
Sbjct: 372 YDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLI 431

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S 
Sbjct: 432 DDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSR 491

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+REV++ F+       RRT   + S        + +IE+E + V I++ G
Sbjct: 492 ERILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGG 543

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     LS +  KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 544 YIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRL 603

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
             G     G+AI  ++ +     I      D         +++  +S G+      S+  
Sbjct: 604 PQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFT 663

Query: 633 ANTRKGKTFLKVSSEEKMKLV 653
              R GK  +K+  +  +KLV
Sbjct: 664 NVRRNGKIAMKLPEDGSVKLV 684


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 362/601 (60%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPEVTVDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS ++    I  E+  ++  +  +     RRT   E+  A        MI +E  
Sbjct: 489 LIRILNSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/628 (38%), Positives = 364/628 (57%), Gaps = 36/628 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+     
Sbjct: 15  LAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA RY
Sbjct: 75  FKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+TSI
Sbjct: 135 TEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGF 250
           PSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++   +ESY   G+G  
Sbjct: 195 PSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG--IESYFETGKGNV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +R++  +E++   +  +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ E +
Sbjct: 253 VIRSKVSIEQLPTRA-ALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P++L+  +F  + ++ RFP+NM  L  G  P+++ +   L  +L H+ 
Sbjct: 312 RLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+     +  M +   RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541
                  RR      +S   +    + +I +E + + +S  G+++ +   S +L      
Sbjct: 490 GDP----RRSEILYGIS---EDIDDEDLITQENVVITMSTNGYLKRIGVDSYNLQHRGGV 542

Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDL 596
               L     DS+   L   T   +L  +  GK Y + A  +  G    + I    LI +
Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + ++ I         C L+ V+   N +
Sbjct: 603 DKDEKI---------CALISVNDYQNGY 621


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/684 (36%), Positives = 396/684 (57%), Gaps = 48/684 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES    +RIV+
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  D + +++ ++  + +E  FP+N+ VL + + P+V+ L  +L+E++ HR E++ 
Sbjct: 302 ELK-RDADAEKVLKKLYKSTPLEKNFPVNLTVL-VDKQPRVLNLKELLQEFIKHRIEIIT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R+ I++GL+ A  N D++I I+R+     + + ++ S+F+L+E Q +A
Sbjct: 360 RRTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQLLTSQFNLSETQANA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL     LE  ++K E   L  + E+   +L+S  +   +I   I E  E+  K  
Sbjct: 420 ILDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSDNE---KIKVFIEETDELVRKYG 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-----------VD 539
           D  +R+TT            ++ +  KE     I N G I + K              ++
Sbjct: 477 D--QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIIN 525

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
             ++   EG+ +        +  I   + DGKAY     +L  G            LN  
Sbjct: 526 SLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK---------LNIE 576

Query: 600 QDIV-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +IV TA+  +    ++ +++ KG    + + +I   ++ G T + ++  E  +LVV V 
Sbjct: 577 GEIVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKSQ-GHTVMPLN--EGDELVVAVA 633

Query: 658 GDHVAVVG---ENRKLLIFSIDQI 678
             H + +G   +N  LL+F  +++
Sbjct: 634 DRHPSYIGIYTKNADLLLFERNEV 657


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/604 (40%), Positives = 355/604 (58%), Gaps = 58/604 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  IL+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +++R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  ++E F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIREQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAY 573
           G+ Y
Sbjct: 597 GRLY 600


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 367/606 (60%), Gaps = 25/606 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG I    + + E++  GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+V EIPYQV K+ +I+K A+L+  K++  +  IRDES  +   +++
Sbjct: 244 KANIEEVN-GRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L  GR PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGR-PQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E +  +L+   ++ + I  E+  VK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDILDKKDRRMDIIKEELEVVKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+  SL  +       V   A 
Sbjct: 477 -GDERRSNIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  + D
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQD-D 592

Query: 602 IVTAFV 607
            V AF+
Sbjct: 593 KVMAFI 598


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGETIQTIINVQQDR 612


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/594 (41%), Positives = 359/594 (60%), Gaps = 33/594 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S+S +L    V++V     +E+ +L Y++S I ERA+PD+RDG KPVHRRI+ +M + G 
Sbjct: 22  SHSRSLELRTVESV-----MEDSFLRYSMSVIIERALPDVRDGLKPVHRRILFSMEKNGW 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             G  F KSARI G+V+GK HPHGD ++YDS+VRLAQ +  RY L+ GQGNFG++DGD  
Sbjct: 77  RPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYMLVDGQGNFGSMDGDPP 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM +    +L  +D++ VDFRD Y+ E+ EP V P+K PNLL NG  GIAVG
Sbjct: 137 AAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPAKLPNLLLNGQIGIAVG 196

Query: 187 MATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           MAT+IP HN+ E+ +A + +ID P + ++E LL+Y+ GPDFPTGGI+    +S+ ++Y  
Sbjct: 197 MATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTGGIVYGG-DSMRQAYAT 255

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGG  VRA   +EE  +G   IVVTE+PY V K+ LIE+IAEL   K+I  ++D+RDES
Sbjct: 256 GRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELHKEKKI-TIQDVRDES 314

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           A   VR+V+  K  S  P  ++  ++ ++ ++T F  NM  L  G  P+V+ L  IL+E+
Sbjct: 315 ARGKVRLVIELKKDSY-PKKVLNQLYKMTALQTSFHYNMLALVDGIQPRVLGLQDILEEY 373

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L HR+ V+ RR+ F +     R  IL+G  IA  NIDE+I IIR   N D+    ++ +F
Sbjct: 374 LKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRASQNTDEAARNLMDKF 433

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  +IL L LR+L  LE  +I+ EL  L A   K++++L   K+    I  E+ E
Sbjct: 434 KLSEVQAKSILALPLRTLTGLERQKIEDELAELRALIAKLEAILADEKEILKIIKAELLE 493

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH---- 536
           +KE +        RRT    +S+       + +I  E + V+++   +I R+L S     
Sbjct: 494 MKEKYGDE-----RRTKI--ISQELGKFSDEELIPDEDVIVLLTTENYIKRTLVSEYRRQ 546

Query: 537 ---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582
                    +  KE D +   + A T + +L  +  G     K Y +PA +L +
Sbjct: 547 HRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRIKTYEVPAASLTA 600


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/697 (36%), Positives = 395/697 (56%), Gaps = 48/697 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G   KK
Sbjct: 4   ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ ++++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT++  H
Sbjct: 124 RMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLAPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +ALI+ PEI I++L++++I PDFPTGGII    E + ++Y  GRG   +RA
Sbjct: 184 NLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  E +R+V
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R     +++ +++  + M+  F + +N+  +  VP+++ L  +++ ++ HR E++
Sbjct: 303 IELK-RDAVAKVVLNNLYKHTPMQDTFGV-INLALVDGVPKILNLKEMMQYYVKHRNEIV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F + A +RR  IL+GL I   N+DE+I+ IR           ++ RF L+E Q  
Sbjct: 361 LRRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIERFGLSEIQAK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  +E  +I +E   +LA  E++  +LNS ++Q   I  E+ +VK+++   
Sbjct: 421 AILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSPEKQMEIIREELLKVKDVYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                RRT   E+   +     + MI +E + + I++ G+I+                ++
Sbjct: 481 -----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVT 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HG 587
               K  D ++    A T + IL  +T G     K Y +P AG    GR          G
Sbjct: 533 GAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAARGRSLANIMELPPG 592

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E I+  I++ + ++    F+  +T   +V   K  A      E     R G   + +   
Sbjct: 593 EKIRTYINIRNFEE--PGFIVMATTHGIV---KKTAL----EEFSHPRRTGIAAITIDEG 643

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683
           +++       GDH  ++ +N   ++ F  +++  M R
Sbjct: 644 DELLDARLTDGDHQIILAKNSGFVVRFPENEVRPMGR 680


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 262/725 (36%), Positives = 384/725 (52%), Gaps = 65/725 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM  +G     A+ KSARIV
Sbjct: 11  VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKAYFKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+RM+++
Sbjct: 71  GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID PE+ +E L+EYI GPDFPT GII      I   YR GRG  R+RA+  VE
Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRMRAKADVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +     R 
Sbjct: 250 VADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ +++  + ME+ F +NM  L  GR PQ+M L  +L+ ++ HRREV+ RR+ F 
Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLQAFIRHRREVVTRRTIFE 368

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420
           ++    R  +L+GL +A  NIDE+I +I+    P+     M+++                
Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + LTE Q   IL +RL  L  LE+ ++  E   LL   + + 
Sbjct: 429 EASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L +       I  E+  ++E +      G  R T    S  D   L   +I  E + V
Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LISPEDVVV 540

Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+ +        + +      SA   KE D +      +T D +L  ++ GK + 
Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600

Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           LP   L        G  I   I L      Q ++    Y     +   +  G       S
Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684
           E      +GK  + +   + +  V    GD  V +   N K + F    +  M R     
Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720

Query: 685 KGVRL 689
           +G+RL
Sbjct: 721 RGIRL 725


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++ E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI+NP I +E+++E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIIL-GRAGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLD-MLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            F +     R  +L GL IA  NIDE+IA+IR    P    + +M  R            
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRL 429

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L+S
Sbjct: 430 IDDPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMTIVKDEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     K + 
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T           +   ++  +++G     + 
Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKL 658

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/712 (35%), Positives = 406/712 (57%), Gaps = 55/712 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           AR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IDVK-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  +++R+ L+E Q  
Sbjct: 360 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L              +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++    D   ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGETIQTIINVQAEHDD-HSYLFFTTRYGVVKRTSVTEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691
             E+++  V    G    ++G      + F+ +Q+  M R     +GV L++
Sbjct: 642 KDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRGVNLRT 693


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/596 (39%), Positives = 351/596 (58%), Gaps = 28/596 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+IP  
Sbjct: 124 RMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +A+I+NPEI I  +++++I PDFPTGGII    E + ++Y  GRG   +RA
Sbjct: 184 NLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDG-VPRVLNLKEMMHYYVKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F + A ++R  IL+GL I   N+DE+I  IR   +    +  ++ RF L+E Q  A
Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMERFGLSEIQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I +E    L   + + S+L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASPQKQMQIIREELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQL 592
              K  D ++    A T + IL  +  G     K Y +P AG    GR     ++L
Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRSLANIMEL 589


>gi|332993179|gb|AEF03234.1| DNA gyrase, A subunit [Alteromonas sp. SN2]
          Length = 898

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/636 (40%), Positives = 366/636 (57%), Gaps = 65/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR GRG   +RA+  +E
Sbjct: 191 INGCIALIKDPSITIDDLMLHIPGPDFPTAAMI-SGRKGIDDAYRTGRGKIYMRAKAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   I++ EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+  K R
Sbjct: 250 TEDNGKETIIINEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVVEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +   ++L+  ++  + ++T F +NM  L  G+ P+V  L   L+ ++ HRREV+ RR+ F
Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLEAFILHRREVVTRRTVF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL IA  NID II +I+    P   K  +V++               
Sbjct: 368 ELRKARDRAHILEGLAIALANIDPIIELIKASPGPADAKKALVAQGWDLGDVSQMLERAG 427

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LTE Q  AIL+LRL  L  LE  +I  E   LL    ++
Sbjct: 428 DDAARPDWLMPEFGIRDGQYFLTEQQAQAILDLRLHRLTGLEHEKILEEYKQLLEVIAEL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +LNS ++    I  E+ +++E F  +     RRT   E++ A      + +IE+E + 
Sbjct: 488 LHILNSPERLMEVIEEELEKIREEFGDA-----RRT---EITAASHDIDIEDLIEQEDVV 539

Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S  G+++  K +  +         SA   K  D ++  L A+T D IL  ST G   
Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGRGKSATKMKNEDFIEKLLVANTHDHILCFSTRGRLY 599

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             K Y LP   L S    G  I  ++ L  N+ I  
Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEDNERITA 632


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/660 (38%), Positives = 385/660 (58%), Gaps = 67/660 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D +RIV+
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ M+  F +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420
           RR+ F ++    R  IL+GL IA  N+D II +IR    P+     +++R          
Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + LTE Q  AIL+LRL+ L  L   +I  E   LL 
Sbjct: 423 LAATGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLE 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I 
Sbjct: 483 AIGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
            G+ Y L    L  + RG  G  I  ++ LN N+ I     VTA+  D   K +V+++ G
Sbjct: 595 RGRLYWLKVYQLPQASRGSRGRPIVNILPLNENERITAILPVTAYEED---KFVVMATAG 651


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 273/776 (35%), Positives = 413/776 (53%), Gaps = 76/776 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KK
Sbjct: 7   DKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD+SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA RYTE 
Sbjct: 67  SARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L  +D++ VDF   Y+    EP V PSK PNLL NG++GIAVGMAT+IP H
Sbjct: 127 RMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID P+ S+E+++  I GPDFPTG  I+  RE I+++Y  GRG  ++R+
Sbjct: 187 NLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIM-GREGILKAYATGRGSVKMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VE + +G   IVVTEIPYQV K+R+IE IAEL   + I  +  +RDES      ++ 
Sbjct: 246 CAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                ++PD+++  ++  + ++  F + M  L  G  P+V+ L  +L+ +L H+R+V+ R
Sbjct: 306 ELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGH-PRVLSLLQVLQYYLGHQRQVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +     R  IL+GLLIA  +IDE+I  IR    ++  K  +++ F LT+ Q  AI
Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAVAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+ E   L      + S+L   ++    +  E+ E K+ F     
Sbjct: 425 LDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDV-- 482

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS---HSVD-----LSA 542
              RRT       AD + L  + MI  E + + ++ RG+++ + +   H+ +     +  
Sbjct: 483 ---RRTQLA----ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HG 587
           +  K+ D++   L+      +L  +  G     KAY +P  N  + +G           G
Sbjct: 536 MGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTG 595

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E +  LIDL+           D +  L + +  G     E +E     R G   + +   
Sbjct: 596 EKVNALIDLDQ---------ADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISL--- 643

Query: 648 EKMKLVVKVTGDHVAVV----GENRKLL--------IFSIDQIPEMSRG-KGVRLQSYKD 694
                   + GDH+A V    G+ R +L         F+   +  M R  +GVR  S   
Sbjct: 644 --------IEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAP 695

Query: 695 GG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           G   I   +    C+ LT  +     + +  N     +  RGG G+   K  P++G
Sbjct: 696 GDRVIGADVLAPDCQVLTVSEEG---FGKRNNMDAYKIQLRGGKGAKNFKITPKTG 748


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/615 (39%), Positives = 372/615 (60%), Gaps = 40/615 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           AA+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA 
Sbjct: 63  AAYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKEAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  +  RF+L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVRFNLSH 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++ +E + L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAILRSEEKLNEIIKEELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS       RRT   E+  +      + +I  EP+ V I++ G+++ +   S +      
Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           + G   K+A+  H            T D ++ ++  G     K Y +P G   S    G+
Sbjct: 527 RRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583

Query: 589 AIQLLIDLNHNQDIV 603
           A+  LI+L  ++ I+
Sbjct: 584 AVVNLINLRPDEKIM 598


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILN----DFNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617
           L  +  GK Y L    +  + RG  G  I  L+ L+  +  VTA +    +     + + 
Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R +   +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDVSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/637 (39%), Positives = 371/637 (58%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+++I GPDFPT  II   R  I E+YR GRG   +RA+ 
Sbjct: 188 NEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++ L+ M+  F +NM  L  G+ P+++ L   L+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLYSLTQMQVTFGINMVALHQGQ-PKLLTLKDCLQAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA  NID II +IR+   P   K ++V+R           
Sbjct: 365 RTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S  +    I  E+  V++ F  +     RRT   E + AD     + +I +
Sbjct: 485 IAALIFILESPDRLMEVIREELIAVRDQFGDA-----RRTEITE-NTADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIINLLPLEANERITA 633


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/733 (36%), Positives = 413/733 (56%), Gaps = 74/733 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLL 422

Query: 410 ---------------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +  S + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +L +  ++ ++LN     +N +   IRE   +  +    G RRT   E SR D +  ++
Sbjct: 483 EILGQIAELTAILN----DFNLLMAVIREELALVLQQYGDG-RRTEIIE-SRIDFS--RE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618
             +  GK Y L    +  + RG  G  I  L+ L+ N+  VTA +    +     + + +
Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLNEFPENHYVFMAT 653

Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676
           + G    V + E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+  
Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712

Query: 677 QIPEMSR-GKGVR 688
            +  M R  KGVR
Sbjct: 713 DVRAMGRTAKGVR 725


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 363/606 (59%), Gaps = 22/606 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++++++   +++ YL+Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL      KK
Sbjct: 3   EKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ F QRY LI G GNFG+IDGDS AA RYTEA
Sbjct: 63  SARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++AE I+  + +D VDF D ++    EP + P+K PNLL NG SGIAVGM+TSIP H
Sbjct: 123 RLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P   +E +++YI GPDFPTG  IV     I ++Y+ G G   +RA
Sbjct: 183 NLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKITLRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           R  +E+ GR    I++ EIPY + K +L+E IAELI   +I  + D+RDES  E +RIV+
Sbjct: 242 RTQIEKKGRKKQ-IIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVV 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K+ + DPD+++  ++  + ++T + +NM  L  G+ P+VM L  ILK ++  RR+V+ 
Sbjct: 301 ELKSGA-DPDIILNQLYKFTSLQTNYRINMLALD-GKQPRVMDLITILKNFINFRRQVIT 358

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR+ +++     R  +L+GL+ A   +D +I+IIR+    K     +  +  +TE Q +A
Sbjct: 359 RRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEKQAEA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +EE ++  E   L  + +    +LN+  +    +  E+ ++K  ++   
Sbjct: 419 ILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKYA--- 475

Query: 491 DLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              +R+T   E    +KA +++  +I+KE + +  S R  I+   S     +     + D
Sbjct: 476 --DKRKTEIIE--DEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAG----KND 527

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607
            +   +   T D +L  +  G  YTLP   +    G   G+ I+  + +  ++ IV    
Sbjct: 528 YIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVIC 587

Query: 608 YDSTCK 613
            +   K
Sbjct: 588 LNEETK 593


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/694 (35%), Positives = 395/694 (56%), Gaps = 42/694 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E+G+++    KKS
Sbjct: 13  NIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAELGVNYNKPHKKS 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 73  ARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDGDSPAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A+ +L  + ++ VDF+  +++   EP V P+K PNLL NG+SGIAVGMAT++  HN
Sbjct: 133 LKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGIAVGMATNMAPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA ++N EI++E+L++++  PDFPTG  I    E +  +++ GRG   +RA 
Sbjct: 193 LTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIY-GMEGVKSAFKTGRGRVVMRAH 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  RG   I+VT++PY V K+ ++EK AELI  K+I  +   RDES  D   V++ 
Sbjct: 252 ATIEE-NRGKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRDESDRDGLRVVYD 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P++++ +++  + +++ F +N   L  GR P ++ L  ++K ++ HR EV+ RR
Sbjct: 311 LRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGR-PMMLNLKDMMKYYVEHRFEVITRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + + ++  ++R  IL+GLLIA  NID +I +IR+   P+     ++ RFSL++ Q  AIL
Sbjct: 370 TQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMERFSLSDLQAKAIL 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  ++++E D L+ E   +  +L S +++   I  E+ +++  +      
Sbjct: 430 EMRLQRLTGLERDKLQAEYDELMTEIADLKEILASEERKRQVIKEELTDIRARYGDE--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             RRT    +   + + L  ++I  E + + IS+ G+I        RS     V   A  
Sbjct: 487 --RRTEINPLGDGNISDL--SLIADEDMVITISHEGYIKRTPTTEYRSQGRGGVGAKAAS 542

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            KE D  +    A   + +L  +  G+ Y LP   L  G    +   L   +N   D   
Sbjct: 543 TKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYELPEGSRTSKGRPLANFINIESD--- 599

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHV 661
               D    ++ V+   N   +  + I+  TRKG   KT L+  S  +   ++ +T D  
Sbjct: 600 ----DKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLEAYSRPRQNGIIAITID-- 653

Query: 662 AVVGENRKLLIFSI-----DQIPEMSRGKGVRLQ 690
               E+ +LL   +     D +   S GK VR  
Sbjct: 654 ----EDDQLLGVCMTNGDNDIVIASSAGKAVRFH 683


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617
           L  +  GK Y L    +  + RG  G  I  L+ L+  +  VTA +    +     + + 
Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LPA NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPAVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQ 600
            GE IQ +I++  ++
Sbjct: 598 EGETIQTIINVQQDR 612


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/703 (36%), Positives = 397/703 (56%), Gaps = 30/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  G  +K
Sbjct: 5   EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++VAEL+LQ +D++ VDF   Y+E   EP V P+KFP LLANGT+GIAVGMAT+IP 
Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  L LID P+ ++E+L+  I GPDFPT G+I+ + E I ++Y  GRG  ++R
Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGT-EGIRQAYTTGRGVIKLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E    G   I+VTE+PYQV K+RL+EKIAEL+  K I  +  + DES      ++
Sbjct: 244 ARVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + ++  F + M  L  G  P+V+ L  +L  ++ H+++V+ 
Sbjct: 304 IDVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGS-PRVLTLKEVLHYYIKHQQDVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F L+E Q  A
Sbjct: 363 RRTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   + + S+L    +    I  E+  V+E +    
Sbjct: 423 ILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
               RRT   E++        + +I +E + + +++  +I+ +        K   V ++ 
Sbjct: 482 ----RRT---EITIDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQ 600
           +  KE D ++  L   T   IL  +  G+ Y L A   N  S +  G AI  L+ L   +
Sbjct: 535 MGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEE 594

Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            I TA +    +     L + + KG       SE  +  R G   + +  ++ +  V   
Sbjct: 595 KI-TAVIQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFT 653

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI 697
            G+   ++G    + + F+ D +  M R  +GV+  + K G +
Sbjct: 654 DGEKHVILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDV 696


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 262/775 (33%), Positives = 425/775 (54%), Gaps = 68/775 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG V+GK HPH D ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+
Sbjct: 78  QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG+SGIAVGMAT+IP HN+
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ N   +IE+L E+I GPDFPT   I+     I E +  GRG   VRA+ 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAKS 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + D+RDES  E +RIV+  
Sbjct: 257 EIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  ++  + ++T F + M  L +   P+V+ L   L+ ++ H+ ++L R+
Sbjct: 317 K-RDVIPEVLLNQLYKSTQLQTNFSVAMLAL-VNNQPKVLNLKEALQIYIDHQFDILLRK 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
           ++F ++       I++GL+IA  NID++I  I+N    +  K  +++++ L++ Q  AIL
Sbjct: 375 TNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYELSDLQAKAIL 434

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+ ++ E+   F      
Sbjct: 435 DMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGD---- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALH 544
             RRT  C     +     + +I  E + +  S++G+++ +   +        V +  ++
Sbjct: 491 -ERRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMN 547

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589
             E D ++  +   T   +L  +  GK Y                +PA NL+S     E 
Sbjct: 548 TYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIE-KDEK 606

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  L+ +N   D  + + + ST K LV   K + F    S I  N   GK  +K++  + 
Sbjct: 607 LMSLLSIN---DYDSGYFFFSTKKGLVKRVKASEF----SRIQNN---GKIAIKLTENDS 656

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDG--GISD--- 699
           +  V+K  GD    +G +  LL+ F  D +  M R      GV+ ++  D   G+S    
Sbjct: 657 LFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHE 716

Query: 700 -VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   +CE        G+  +R E      +  RG  G +  K  P++G  +++
Sbjct: 717 GSLLLAVCE-----KGVGKMTDREEY----RMTNRGSKGVITIKVTPKTGNIINT 762


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 270/751 (35%), Positives = 436/751 (58%), Gaps = 50/751 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMGL     ++KSARIVGEV+GK
Sbjct: 11  LKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVGEVLGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ FV RYPL+ GQGNFG+IDGDS AA RYTEAR+T++AE +L 
Sbjct: 71  YHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIAEEMLA 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDF   ++    EPVV PSK PNLL NG+SGIAVGMAT++P HN+ E+CE  +A
Sbjct: 131 DIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVCEGIIA 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I NPEIS+E+L++Y+ GPDFPTGG+IV   + I E+Y  GRG   VR +  VE+     
Sbjct: 191 YIQNPEISVEELMKYVKGPDFPTGGVIV-GVDGIKEAYLTGRGKITVRGKVEVEK----- 244

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++ E+PY V K++L+E IAEL    RI  +  IRDES  E +R+V+  K+ S +P+ 
Sbjct: 245 NAIIIREVPYMVNKAKLVESIAEL-AKDRIDEIRTIRDESDREGIRVVIELKSGS-NPET 302

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +++ ++  S+++T F + +N+  +   P+++ L  ++  ++ HRRE++ RR+++ ++   
Sbjct: 303 VIKKLYAYSNLQTTFGI-INLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEKAQ 361

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+ I++GL +   +ID  I +I++   P   K  ++  +SL+E Q DA+L +RL+ L  
Sbjct: 362 ERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIETYSLSEKQADAVLQMRLQKLTA 421

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC- 500
           +E   +  E ++L  +  + +S+L S ++    IA E+RE++E +        RRT    
Sbjct: 422 MEIDALLKEYESLKEKIAEYESILASPEKIDAIIADEVREIREKYGDE-----RRTEIIG 476

Query: 501 ---EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGD 549
              E+S  D       +IE+E   V+I+  G+ + +            V +       GD
Sbjct: 477 QVDEISTTD-------LIEEEENAVLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF- 606
            + +    ++TDR+L+ +  G+A+ + A  +  +     G  ++ LI L + + +V+A  
Sbjct: 530 EIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSALG 589

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           V D   K+ V+ S      +++  +I      +  +K S+ E ++ V  + GD + +   
Sbjct: 590 VKDFNGKIAVILSPDG--YIKKVPLIEFENAKRAGVKASAGE-IQQVELLEGDSIFIATA 646

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN-RSEN 724
           N  ++      +PE  R  KGV     +DG    +      EG   +    R Y  R + 
Sbjct: 647 NGNVVRLRETDVPEYGRNAKGVIAVRLRDG--DRIAWMSASEGEYLLMLTERGYGKRCDV 704

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGK--FLSS 753
           +   ++G RG +G +  +   ++GK  F+S+
Sbjct: 705 NEFRFIG-RGSMGMIGYRISEKTGKLAFISA 734


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 288/767 (37%), Positives = 417/767 (54%), Gaps = 58/767 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   +   YL Y++S I  RA+PD RDG KPV RR++ AM EMG+  G A++KSARI
Sbjct: 14  TVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSARI 73

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+T+
Sbjct: 74  VGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLTR 133

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE ++  +DE+ VD+   Y+E   EP V P+  P LL NG+SGIAVGMAT+IP HN+ E
Sbjct: 134 LAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNITE 193

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L L+DNPE +   L+ ++ GPDFPTGG+I+  R  I  +YR GRG   +R    V
Sbjct: 194 VLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRTGRGSIVMRGVVEV 252

Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
           E+  R    C+V+ EIPY V K+RLIEKIAEL+  K+I  + DIRDES  D +RIV+  K
Sbjct: 253 EDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVVELK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             ++ P ++M  +F+L+ +++ F  N   +  GR P+ + L   L+ +L  R++V+ RR+
Sbjct: 313 REAI-PRIIMNQLFLLTPLQSSFGYNAVSIVNGR-PETLSLSQTLRVFLGFRKDVVTRRT 370

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            FR++    R  IL+GL  A   IDEIIA+IR    P+     +VS F+ +E Q  AIL+
Sbjct: 371 LFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSELQAQAILD 430

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRL+ L  LE  +I++E   + A    ++++L S +     I  E R + E F       
Sbjct: 431 LRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERFGDG---- 486

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
            RRT        D+  L  +A+I  EP  V +S  G+I+ +    +            + 
Sbjct: 487 -RRTVIV----PDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGRIGVT 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG-HGEAIQLLIDLNHN 599
            KE D L   L+A   D +L  +  GK Y L    L     + RG H  ++  L      
Sbjct: 542 LKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERV 601

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             I+    ++    LL  + KG       SE  AN R+G     V  E          GD
Sbjct: 602 AAILPVRSFEGDNLLLFGTVKGYFKKTRLSE-YANIRQGGLIATVLEE----------GD 650

Query: 660 HVA---VVGENRKLLI---------FSIDQIPEMSRG-KGVRLQSYKDGGISDVICF-KI 705
            +A   V+  +R+LL+         F  D I    R  +GVR  + +      V+ F ++
Sbjct: 651 RLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVR--AIRLSPDDSVVSFEEV 708

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + +  + + +  +  L  L KRGG G  + K  P +G  ++
Sbjct: 709 SDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVA 755


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/684 (36%), Positives = 383/684 (55%), Gaps = 57/684 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 25  SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D++ VDF+D Y+ +D EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A LALI+NP+++ E+L+ Y+ GPDFPTGGI++  R    ++Y  GRG   +R++  V
Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRSKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++  +F  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR++
Sbjct: 323 RDATPEVVLNQLFRFTSMQTYFGCNMLALNGGR-PETLTLRRFLTSFIDFREDVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           + ++    R  IL GL +A  N+DE++A IR+                            
Sbjct: 382 YELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLI 441

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S 
Sbjct: 442 DDPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+ EV+E F+       RRT   + S        + +IE+E + V I++ G
Sbjct: 502 DRIMAIIRDELSEVREKFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ +     ++ +  K+ D +     A+T  ++L  +TDG +Y L    L
Sbjct: 554 YIKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRL 613

Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEII 632
            L GR   G+AI  ++ +     I      D   K      ++  +S G     + S+  
Sbjct: 614 PLGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFT 673

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV 656
              R GK  +K   E +   ++ V
Sbjct: 674 NVMRNGKIAMKFEGEHEGTTLIDV 697


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 353/602 (58%), Gaps = 49/602 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR V
Sbjct: 24  ISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYETGNSHDKSYRKSARPV 83

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 84  GDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 144 AAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 203

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P++S E L+EY+ GPDFPTGGI++  R    ++Y  GRG   VRA+  VE
Sbjct: 204 VDATLALIDDPDLSSEDLIEYVPGPDFPTGGIML-GRSGARKAYLEGRGSVIVRAKTRVE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + I++ EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K R
Sbjct: 263 EIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELK-R 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ GR P+ + L   L  ++  R EV+ RR++F
Sbjct: 322 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFVDFREEVVARRTAF 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420
            ++    R  IL GL +A  NIDEI+A IR+     +  + +M  R              
Sbjct: 381 ELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEAREKLMTRRWPAESILEYIELID 440

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +      +L S +
Sbjct: 441 DPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIRDYLEILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV++ F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 501 RIMQIIRDELHEVRDQFAVP-----RRTAIVDWS---GDMDDEDLIEREDMVVTVTSGGY 552

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ +     +  +  KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 553 IKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 612

Query: 582 SG 583
            G
Sbjct: 613 QG 614


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/688 (36%), Positives = 397/688 (57%), Gaps = 30/688 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIGK
Sbjct: 92  MEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIGK 151

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VRLAQ F  R PL+ G GNFGNIDGDSAAA RYTE+R+ + A  +L+
Sbjct: 152 YHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMELLR 211

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D++  Y+E   EPVV P++FPNLL NG+ GIAVGMAT+IP HN++E   A   
Sbjct: 212 DLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVCM 271

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP+ +++ L+  + GPDFPTG +I+ S E I ++Y  GRG   +RA+  VE    G 
Sbjct: 272 LIDNPDATVDDLMTVMPGPDFPTGAVIMGS-EGIRQAYETGRGIITIRAKAHVESTKTGR 330

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             +V TE PY V K  L EKIA+L+  KR+  + D+RDES  + +R+V+  K  ++ P++
Sbjct: 331 NKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAI-PEV 389

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  S +++ F + +++  +  VP+ + L  +L+ ++ H+ +V+ RR+ F +    
Sbjct: 390 VLNNLYKYSALQSSFGI-IDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKAR 448

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GLL+A  +IDE+I+IIR+   + +    ++ RF  T+ Q  AIL +RLR L  
Sbjct: 449 ARAHILEGLLLALDHIDEVISIIRSSRTDTQASERLIERFGFTKQQTTAILEMRLRRLTG 508

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ ELD L    E  + LL   ++    I  E+ E+ E +       +RRTT   
Sbjct: 509 LERDKIQEELDGLRRAIEYYEDLLADSRKILEVIKSEMSEIGEKYGD-----KRRTT--- 560

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
           +S A      + +I +E + V +++ G++        RS K     +  L  K+ D ++ 
Sbjct: 561 ISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVED 620

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN---HNQDIVTAFVY 608
              A T D ++  +  GK Y +    L  G  H  G A+  ++ L    H   ++T   +
Sbjct: 621 LFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREF 680

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   L+  ++ G       S+   + R G   + +  ++++  V +V  G  V +  E 
Sbjct: 681 PADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDDELVNVRRVKPGQKVILCSEV 740

Query: 668 RKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
            K ++F   ++ P      GVR  + KD
Sbjct: 741 GKAILFDESEVRPTGRDTSGVRGITLKD 768


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/720 (35%), Positives = 406/720 (56%), Gaps = 51/720 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++   +V++   ++E Y+ YA+S I  RA+PD+RDG KPVHRRI++AM ++G+    +
Sbjct: 4   LKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNKS 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 64  HKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGM+T+I
Sbjct: 124 TEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+IDNP++ I +L++ I GPDFPTGG+I+  R+ I +++  G+G  +
Sbjct: 184 PPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIM-GRKGIKKAFETGKGKVK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE G     I+V E+PYQV K++L+EK A L+    +  + D+RDES  +   
Sbjct: 243 VRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +S +P +++  +F  + ++  F + M  L  G  P+V+ L  +L+ +L H++EV
Sbjct: 303 ISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGE-PEVLSLKEVLQHYLEHQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ + +     RV IL+GL  A+ NID ++  IR+ +     +  ++S F LT+ Q 
Sbjct: 362 VTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLISDFDLTKKQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE  +I+SE   L+ E E + S+L S ++  + I  EI  +KE   K
Sbjct: 422 KAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEKLLDIIKDEILVLKE---K 478

Query: 489 STDLGRRRTTFCEVSRA----------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
             D  R +    E+  A                   I++ P+    S     R +   + 
Sbjct: 479 YKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTYRSQHRGGRGIIGINP 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
           D         DS++      T D +L  +  G+ Y L    +   S +  G AI  L+D+
Sbjct: 539 DAK-------DSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGTAIINLLDM 591

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
             N+  VTA +    +D    LL+V+ +G   IV+ +E+        G   L +   +++
Sbjct: 592 EPNER-VTAVIPVEDFDLDDYLLMVTEQG---IVKRTELQEFNTNYTGLIALDLQQNDEL 647

Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY---------KDGG 696
             V   TG    ++G    L I F+  ++  M R     KG+ L S          KDGG
Sbjct: 648 IEVRLTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKVVGADIIKDGG 707


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 373/616 (60%), Gaps = 40/616 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+  Q  
Sbjct: 360 TRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSVRQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYADP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590

Query: 586 HGEAIQLLIDLNHNQD 601
             EAIQ +I++  +Q+
Sbjct: 591 ENEAIQTIINVTKDQE 606


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 366/614 (59%), Gaps = 38/614 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    +
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+ 
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVVI 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  A
Sbjct: 368 RRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQA 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+   
Sbjct: 428 ILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD- 486

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
               RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     + 
Sbjct: 487 ----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQ 539

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
               K+ D +K  +   T DR+L  +  G+ Y                LP  NLL     
Sbjct: 540 GTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LDE 598

Query: 587 GEAIQLLIDLNHNQ 600
           GE IQ +I++  ++
Sbjct: 599 GETIQTIINVQQDR 612


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/596 (39%), Positives = 349/596 (58%), Gaps = 28/596 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +  +ALI NPE+ +  L++++I PDFPTGGII    E +  +Y  GRG   +RA
Sbjct: 184 NLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIY-GYEGVRNAYMTGRGKVVIRA 242

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   + G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMIYYIKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +   ++R  IL+GL I   N+DE+I  IR   + +  +  ++ RF L+E Q  A
Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    LA  E +  +L+S ++Q   I  E+ +V+E++  + 
Sbjct: 422 ILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSPEKQMEIIREELLKVREVYGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGQGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQL 592
              K  D ++    A T + IL  +  G     K Y +P AG    GR     ++L
Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAARGRALANIMEL 589


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 272/730 (37%), Positives = 410/730 (56%), Gaps = 73/730 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 49  ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 108

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 109 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 168

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 169 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 228

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 229 SEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 287

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 288 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 347

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+ ++ HRREV+ R
Sbjct: 348 VKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 405

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+ L IA  NID II +IR    P    V+               
Sbjct: 406 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAML 465

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 466 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 525

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  V++ F       +RRT   E++        + +I +
Sbjct: 526 IAELIFILQSPDRLMEVIREELEAVRDQFGD-----QRRT---EITANSSDINIEDLINQ 577

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 578 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 637

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 638 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHVFMATASGT- 695

Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679
             V+++ +   +R +    + V+  E  +L+ V +T   + V +   N K++ F   Q+ 
Sbjct: 696 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVR 753

Query: 680 EMSR-GKGVR 688
            M R   GVR
Sbjct: 754 SMGRTATGVR 763


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/602 (39%), Positives = 352/602 (58%), Gaps = 56/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDS AA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+E +SEP V P++ P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LA+ID P++++  L+ +I GPDFPT  II      I  +Y  GRG   +RAR   E
Sbjct: 191 ISACLAMIDQPDLTVHDLMAHIPGPDFPTAAII-NGASGIYNAYTTGRGKIYLRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++G  S   I+ TE+PYQV K+RL+EKIAEL+   ++  +  +RDES +D   ++    R
Sbjct: 250 DIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  +  +T F +NM  L  GR P  M L  I+  ++ HRRE++ RR+ +
Sbjct: 310 GEMPEVVLNNLYKQTQFQTVFGINMVALLDGR-PHCMNLREIISAFINHRREIVTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409
            ++    R  IL+GL IA  NIDE+IA+I+                             +
Sbjct: 369 NLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALLDRAD 428

Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            D+ +P        +    + L+E Q  AIL LRL  L  LE+ +I +E   LL + ++ 
Sbjct: 429 ADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQIDEY 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S  +    I  E+  +KE +S       RRT   E+ +       + +I +E + 
Sbjct: 489 LFILGSDVRLMEIIREELVAIKEQYSDE-----RRT---EILQNHSDLSDEDLITEEDMV 540

Query: 522 VVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++S  L  +          SA   KE D +   + A+T D IL  S+ GK Y
Sbjct: 541 VTMSHEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVY 600

Query: 574 TL 575
            L
Sbjct: 601 WL 602


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 407/714 (57%), Gaps = 57/714 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ Q  A
Sbjct: 364 RRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643
           GE IQ +I+++  +        +    L  V+ KG   +V+ + +   AN R  G   L 
Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692
           +  E+++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/747 (35%), Positives = 405/747 (54%), Gaps = 78/747 (10%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N  +   ++  +   + +   +   YL YA+S I  RAIPDLRDG KPVHRR++ AM E
Sbjct: 13  ENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHE 72

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR VG+ +GK HPHGD S+YD+LVR+AQ F    PL+ GQGNFG++DG
Sbjct: 73  TGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDG 132

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTE RM + +  +L  +D+D V+F+D Y+ +D EP V P++FPN+L NG  GI
Sbjct: 133 DSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGI 192

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A LALI++P++  E+LLE + GPDFPTGGII+  R    ++Y
Sbjct: 193 AVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGIIL-GRSGARKAY 251

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VRA+  +EE   G   I++ EIP+QV K+ LIEKIAEL   KRI  +  ++D
Sbjct: 252 LEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQD 311

Query: 304 ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES    VR+V+  K R    ++++  +F  + M+T F  NM  L+ GR P+ + L   L 
Sbjct: 312 ESDRVGVRVVIELK-RDATAEVVLNQLFRFTPMQTSFGANMLALNGGR-PEQLTLRDFLT 369

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------- 409
            +L  R EV+ RR+++ ++    R  +L GL +A  N+DE++A IR+             
Sbjct: 370 HFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMT 429

Query: 410 ---------------EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                          +D   PV     ++L+E Q  AIL LRL+ L +L   ++  EL +
Sbjct: 430 RRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKS 489

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L     +  ++L S ++    I+ E+REVK +F+       RRT   E++        + 
Sbjct: 490 LAEAIREFLAILASRERIMGIISDELREVKNLFAVP-----RRT---EITDWAGDLDDED 541

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V I++ G+I        R+ +     LS +  KE D +     A+T   +L 
Sbjct: 542 LIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELLF 601

Query: 566 LSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVV 617
            +TDG  Y L    L L GR   G+AI  ++ +     I      D+        +++  
Sbjct: 602 FTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIFS 661

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           +S+G+      S+     R GK  +K+         V++ G  +A   E+  +++F+   
Sbjct: 662 TSEGDVRRNALSDFANVMRNGKIAMKLPEG------VELIGARMAT--ESDDVMLFT--- 710

Query: 678 IPEMSRGKGVRLQSYKDGGISDVICFK 704
               + G+ +R Q+      +DV  FK
Sbjct: 711 ----AAGRAIRFQT------TDVRVFK 727


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 267/733 (36%), Positives = 413/733 (56%), Gaps = 74/733 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  ++   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +L +  ++ ++LN     +N +   IRE   +  +    G RRT   E SR D +  ++
Sbjct: 483 EILGQIAELTAILN----DFNLLMAVIREELALVLQQYGDG-RRTEIIE-SRIDFS--RE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618
             +  GK Y L    +  + RG  G  I  L+ L+ N+  VTA +    +     + + +
Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLTEFPENHYVFMAT 653

Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676
           + G    V + E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+  
Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712

Query: 677 QIPEMSR-GKGVR 688
            +  M R  KGVR
Sbjct: 713 DVRAMGRTAKGVR 725


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/702 (34%), Positives = 406/702 (57%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE  ++  L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G+      K
Sbjct: 9   EETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELGVTPDKPHK 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DGD AAA RYTE
Sbjct: 69  KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDGAAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D ++FRD Y+  + EP V P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 129 ARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAVGMATNIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y  GRG   VR
Sbjct: 189 HNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVL-GKSGIRRAYETGRGSITVR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE+  G   I++TE+PY V K+RL+E+IA+L   K+I  +  + DES      V+
Sbjct: 248 GRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDESDRVGMRVV 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ +++ F  NM  + + + P+V+ L  IL+ +L H+ EV+ 
Sbjct: 308 IEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAI-VNQEPKVLSLKEILRHYLDHQEEVVR 366

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RRS F  +  + R  IL+GL IA  +ID I+AI+R+    D  K   ++ + L++ Q  A
Sbjct: 367 RRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYGLSDKQAQA 426

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I +E + L A  + ++ +L S + ++  I  E+ E+++ F    
Sbjct: 427 ILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLASEELRYEIIEQELLEIQQRFDNP- 485

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
               RRT   E+   +  +L+ + +IE+E + + ++  G+I+ L +            + 
Sbjct: 486 ----RRT---ELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRLANTEFKAQRRGGRGVQ 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
            +   + D ++  +   T D +L  +  GK Y      +   S    G  +  L++++  
Sbjct: 539 GMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDSA 598

Query: 600 ---QDIVTAFVYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
              Q I++    D T + L  ++ +G    V  SE       G   +++  ++++  VV 
Sbjct: 599 EKIQAIISVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDDELIRVVV 658

Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            +G+   ++G  +   + F  D++  M R   GVR  S +DG
Sbjct: 659 TSGNDGIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDG 700


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 260/687 (37%), Positives = 390/687 (56%), Gaps = 65/687 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  ++KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+V EIPYQ+ K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 KIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 VK-RDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDILSAFINHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L +A +NID  I +IR                          
Sbjct: 365 RTIFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 EQAGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +K+ ++ +     RRT   E S AD     + +I +
Sbjct: 485 IGELLFILENPERLREVIREELLAIKDQYNDA-----RRTELTENS-ADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D L+  L A+T D IL  S  
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNK 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           GK Y +    L  + RG  G  I  L+ L   + I TA +    Y+    + + ++ G  
Sbjct: 597 GKMYWMKVYQLPEASRGARGRPIVNLLPLEQEERI-TAILPVREYEDGLNIFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKM 650
              + SE       G   +K+S  +++
Sbjct: 656 KKTKLSEFSRPRSAGIIAVKLSDGDEL 682


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 381/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G+  G  +
Sbjct: 5   IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGITAGKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVMHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDEII IIR   + K     ++SR        
Sbjct: 362 VIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISRPWKLNNEI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QVDAIL LRL  L  L   ++ +E   LL +
Sbjct: 422 LGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEYKELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  ++NS ++    I  E+ +V+  F+       RRT   E++ A      + +I +
Sbjct: 482 IAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     ++A+  D   K +++++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEED---KFVIMATAG 649


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 357/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E   + S   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + M+  F +NM  L  G+ P+++ L   L+ ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA +NID II +IR    P   K  +VS+           
Sbjct: 365 RTIFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
              +  +L S ++    I  E+  ++E F  +     RRT       A+ A +  + +IE
Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRMY 600


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/684 (36%), Positives = 393/684 (57%), Gaps = 48/684 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES    +RIV+
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  D + +++ ++  + +E  FP+N+ VL + + P+V+ L  +L+E++ HR E++ 
Sbjct: 302 ELK-RDADAEKVLKKLYKSTPLEKNFPVNLTVL-VDKQPRVLNLKELLQEFIKHRIEIIT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R+ I++GL+ A  N D++I I+R+     + + ++ S+F+L+E Q +A
Sbjct: 360 RRTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARELLTSQFNLSETQANA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL     LE  ++K E   L  + E+   +L+S  +   +I   I E  E+  K  
Sbjct: 420 ILDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSDDE---KIKVFIEETDELVRKYG 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-----------VD 539
           D  +R+TT            ++ +  KE     I N G I + K              ++
Sbjct: 477 D--QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIIN 525

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
             ++   EG+ +        +  I   + DGKAY     +L  G            LN  
Sbjct: 526 SLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK---------LNIE 576

Query: 600 QDIV-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +IV TA+  +    ++ +++ KG    + + +I     K +  + +   E  +LVV V 
Sbjct: 577 GEIVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFY---KSQGHMVMPLNEGDELVVAVA 633

Query: 658 GDHVAVVG---ENRKLLIFSIDQI 678
             H + +G   +N  LL+F  +++
Sbjct: 634 DRHPSYIGIYTKNADLLLFERNEV 657


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 355/602 (58%), Gaps = 56/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEIRMDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI+N ++S++ L+E+I GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 191 VRGCIALIENSDLSVDDLMEFIPGPDFPTGGII-NGRAGILQAYRTGRGRIYVRAKHHVE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  + G   +++TEIPYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    R
Sbjct: 250 EDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++ ++F  + ME+ F +NM  L  G+ P+++ L   L+ ++ HRREV+ RR+ +
Sbjct: 310 GEMPDVVINNLFAQTQMESVFGINMVALVDGQ-PKILDLKTALECFIRHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------- 409
            ++    R  IL+GL +A  NID +I +I+                              
Sbjct: 369 LLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQMLERAG 428

Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           ED  +P        +   +++L+  Q  AIL LRL  L  LE  ++ +E   LL    ++
Sbjct: 429 EDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLERIAEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+  + E +      G  R T    SR D       +I +E + 
Sbjct: 489 LKILGSHERLMEVIREELEAILEEY------GDERRTEITASRKDLTVAD--LITEEDMV 540

Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS+ G+ +        S +      SA   K+ D ++  L A+T D IL  +  GK Y
Sbjct: 541 VTISHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVY 600

Query: 574 TL 575
            L
Sbjct: 601 WL 602


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/605 (40%), Positives = 374/605 (61%), Gaps = 27/605 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
           +K V +  +++E YL Y++S I  RA+P+ RDG KPVHRRI++AM   +GL   A +KK 
Sbjct: 10  IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++YD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA RYTEA+
Sbjct: 70  AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+V E +L  +++D VDF   Y+  + EP + P++FPNLL NG++GIAVGMATSIP H 
Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +  I+NP+  IE +L  I GPDFPTGGII   R+ I+E+Y+ GRG  ++RA+
Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGII-HGRQGIIEAYKTGRGRIKIRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE+  +    IVV EIPYQV K+RL E+I  L   K +  + ++RDES +D +R+V+ 
Sbjct: 249 VHVEKT-KTKDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIE 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  S MET F + +  +  GR P++  L  +L  +++HR+ ++ R
Sbjct: 308 LKREAM-SEIVLNHLYKSSAMETTFGIILLAIE-GREPKIFTLLELLDIFISHRKTIVIR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F ++    RV IL+G  IA  NIDEI+A+IR   N +K +  ++SRFSLTE Q  AI
Sbjct: 366 RIIFELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSRFSLTEIQSKAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +I++E   L+A   +++S+L S  +    I  E+ EV++ FS    
Sbjct: 426 LEMRLQRLTGLERDKIENEYRELVALIAELESILRSEDKINGVIKEELLEVQKQFSSP-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSAL-- 543
              RRT   E    D   ++  +I  E + V +S+RG+++ +      K H      +  
Sbjct: 484 ---RRTLIEE--NYDAIDIED-LIPNEAVVVTMSHRGYVKRVLLKTYEKQHRGGKGKISG 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGH-GEAIQLLIDLNHNQD 601
           +  + D ++    A+T D I+ ++  G+ Y L    +  +GR   G+A+  LI L   + 
Sbjct: 538 NTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAIGKAVVNLIGLQDGEK 597

Query: 602 IVTAF 606
           I+T  
Sbjct: 598 IMTTI 602


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/596 (40%), Positives = 357/596 (59%), Gaps = 23/596 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +KKSARIV
Sbjct: 22  VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSARIV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE RM+++
Sbjct: 82  GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRMSKI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 142 AELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNMVEV 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               L LIDNP+ +I++L+  I GPDFPT G+I+ + E I ++Y  GRG  ++RAR  +E
Sbjct: 202 INGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARAHIE 260

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++    R 
Sbjct: 261 TMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELRRD 320

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++  F + M  L  G+ P +M L  +L+ ++ H+  V+ RR+ + 
Sbjct: 321 SAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQEMVITRRTRYE 379

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +   + R  IL+GL IA  ++D +I  I   R  D  +  ++  F LTE Q  AIL+LRL
Sbjct: 380 LAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILDLRL 439

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++   K  D  R  
Sbjct: 440 QRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRD---KYGDKRRTE 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEG 548
            TF + S  D   L    I +E + V ++   +I+ +        +   V +  +  KE 
Sbjct: 497 ITF-DASEMDIKDL----IAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKET 551

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
           D +   L   T   IL  +  G+A+ L +  +  SGR   G AI  L+ + +++ I
Sbjct: 552 DIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVENDERI 607


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 63  SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   + +      
Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G+ ++    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621
           A+  LI+L  ++   +I+    +D +  L+  +  G
Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 364/631 (57%), Gaps = 42/631 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+     
Sbjct: 15  LAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA RY
Sbjct: 75  FKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+TSI
Sbjct: 135 TEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGF 250
           PSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++   +ESY   G+G  
Sbjct: 195 PSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG--IESYFETGKGNV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +R++  +E++   +  +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ E +
Sbjct: 253 VIRSKVSIEQLPTRA-ALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P++L+  +F  + ++ RFP+NM  L  G  P+++ +   L  +L H+ 
Sbjct: 312 RLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+     +  M +   RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  RR      +S   +    + +I +E + + +S  G+   LK   VD   L  +
Sbjct: 490 GDP----RRSEILYGIS---EDIDDEDLITQENVVITMSTNGY---LKRIGVDAYNLQHR 539

Query: 547 EG-----------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--L 593
            G           DS+   L   T   +L  +  GK Y + A  +  G    + I    L
Sbjct: 540 GGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNL 599

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           I ++ ++ I         C L+ V+   N +
Sbjct: 600 IKIDKDEKI---------CALISVNDYQNGY 621


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 269/756 (35%), Positives = 423/756 (55%), Gaps = 48/756 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+  +++  YL YA+S I  RA+PD+RDG KPVHRR + +MSEMG+ +  A+KKSARIV
Sbjct: 10  ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKAYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 70  GDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D+D VDF + Y+    EP V P++ P LL NGTSGIAVGMAT+IP HN+ EI
Sbjct: 130 SDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNIPPHNITEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   +ID P    E +L ++ GPDFPT GII+ S++ I  +YR GRG   +RAR  +E
Sbjct: 190 ISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKD-IQTAYRTGRGSITIRARVLIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E   G   I+V EIPY V K+ +IEKIA+L+  K+I  + D+RDES +D +R+V+  K +
Sbjct: 249 ETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRVVIELK-K 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + D+++  ++  + ++T F  NM  +  G+ PQ + L  IL+E+L HR  V+ RR+ F
Sbjct: 308 GENVDVVLNRLYKFTQLQTSFGFNMVAIVDGK-PQTLSLREILEEFLKHRVTVVTRRTQF 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLR 435
            ++  + R+ IL+GL+ A  NIDE+I  I+ ++D P  K  + ++F  TE Q  +IL +R
Sbjct: 367 LLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQFGFTEIQAQSILEMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++K E +N+L + E   S+L +     + I  E+++V + +        R
Sbjct: 427 LQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMMSVIKDELQDVLDKYGDD-----R 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLSALHFKEGDSLK- 552
           RT   E++        + +I      V +++ G+I++  L S+         K G   K 
Sbjct: 482 RT---EIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVAQKRGGKGKTGAGSKD 538

Query: 553 -------IALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI- 602
                  I    HT  R++  +  GK + L    L   +    G  I  L+ L   + + 
Sbjct: 539 EDFVERLIVTTNHT--RLMFFTNTGKVHYLKVYALPEAQRDAKGRHISNLLTLEPEEFVA 596

Query: 603 -VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
            V A   ++  K L  ++K         E   + R G   +K+   +++ L   +T D  
Sbjct: 597 SVLALPAETDGKYLFFATKSGTIKKTSLEEFKSGRSGIVAIKLRDGDEI-LTADITTDED 655

Query: 662 AVVGENR--KLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI--- 712
            V+   +  K + FS      M R     +G+ L++       +++  ++  G  +I   
Sbjct: 656 TVILSTKAGKTIQFSSTDARPMGRSTSGVRGITLEAR-----DELMSMEVLTGAPYILSV 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            SAG       ++    +  RGG G  + +  P++G
Sbjct: 711 TSAGYGKRTPVDEY--RVQTRGGKGLKLCRVSPKTG 744


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V  S++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +
Sbjct: 485 IGELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALI++  I+IE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++ +     RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617
           L  +  GK Y L    +  + RG  G  I  L+ L+  +  VTA +    +     + + 
Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 373/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++ +I+IE L+E+I GPDFPTG II   R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAII-NGRRGIDEAYRTGRGKVYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +
Sbjct: 485 IGELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 360/605 (59%), Gaps = 57/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ E  LA I+N +I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 DIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G +P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNG-LPKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NIDEII +IR    P   K  +++R            
Sbjct: 365 TIFELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLE 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I  E   LL E 
Sbjct: 425 RAGTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E
Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAATHDIDMEELIARE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 537 DVAVTLSHAGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KTYRL 601


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/635 (39%), Positives = 369/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 355/574 (61%), Gaps = 24/574 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     ++
Sbjct: 5   EGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+IP 
Sbjct: 125 AKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV +   I  +Y  GRG   VR
Sbjct: 185 HNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGT-SGIKSAYETGRGKIIVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+  ++E  +G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D +RIV
Sbjct: 244 AKTEIQE-EKGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++ +  ++  + M+  F + M  L +   P+V+ L  +L  +L  + E+L
Sbjct: 303 VELK-RDANANITLNQLYKHTRMQDTFGVIMLTL-VDNEPKVLNLKQMLVHYLKFQEEIL 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA   IDE+I +IR+    +     ++ +F+L+E Q  
Sbjct: 361 TRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +   
Sbjct: 421 AILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              G  R T  ++S  D     + +IE+E + + +++ G+I+ + + +          + 
Sbjct: 478 ---GDERRTEIQISNDDINI--EDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           A+  KE D ++      T   IL  +  GK Y L
Sbjct: 533 AMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKL 566


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|332854274|ref|ZP_08435274.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332865651|ref|ZP_08436477.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|332728090|gb|EGJ59479.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332735172|gb|EGJ66252.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
          Length = 904

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617
           L  +  GK Y L    +  + RG  G  I  L+ L+  +  VTA +    +     + + 
Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|332876018|ref|ZP_08443804.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735884|gb|EGJ66925.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
          Length = 904

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617
           L  +  GK Y L    +  + RG  G  I  L+ L+  +  VTA +    +     + + 
Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G+   ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 355/574 (61%), Gaps = 24/574 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     ++
Sbjct: 4   EGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+IP 
Sbjct: 124 AKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV +   I  +Y  GRG   VR
Sbjct: 184 HNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGT-SGIKSAYETGRGKIIVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+  ++E  +G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D +RIV
Sbjct: 243 AKTEIQE-EKGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++ +  ++  + M+  F + M  L +   P+V+ L  +L  +L  + E+L
Sbjct: 302 VELK-RDANANITLNQLYKHTRMQDTFGVIMLTL-VDNEPKVLNLKQMLVHYLKFQEEIL 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA   IDE+I +IR+    +     ++ +F+L+E Q  
Sbjct: 360 TRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +   
Sbjct: 420 AILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY--- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              G  R T  ++S  D     + +IE+E + + +++ G+I+ + + +          + 
Sbjct: 477 ---GDERRTEIQISNDDINI--EDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQ 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           A+  KE D ++      T   IL  +  GK Y L
Sbjct: 532 AMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKL 565


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 269/797 (33%), Positives = 419/797 (52%), Gaps = 67/797 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  V+L   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TAFAKEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF   Y++ + EP V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEVRMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A LALI+NPE  ++ L+ ++ GPDFPT GII      I E+Y  GRG  
Sbjct: 182 IPPHNLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGII-NGAAGIREAYLTGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR   E    G   I+V E+PYQV K+RL+EKIAEL+   ++  +  +RDES +D  
Sbjct: 241 YLRARCQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + M++ F +NM  L  GR P++M L  ++  ++ HRRE
Sbjct: 301 RMVIELRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGR-PRLMNLRDLIAAFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------- 420
           V+ RR+   ++    R  +L+GL +A  NIDE+I +I++   P   K  +VSR       
Sbjct: 360 VVTRRTLHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVV 419

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL+LRL  L  LE+ +I +E  
Sbjct: 420 TELLERADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ- 511
            LL +   +  +L    +    I  E+  ++E F        RRT       AD+  L  
Sbjct: 480 ALLEQIADLLDILAKDTRLMQVIRDELVAIREQFGDP-----RRTEII----ADRLDLSA 530

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G++        R+ +       A   KE D ++  + A+T D I
Sbjct: 531 EDLITEEDMVVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTI 590

Query: 564 LLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ GK Y L    L   S    G     L+ L   + I        +D    + + +
Sbjct: 591 LCFSSSGKVYWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAHFIFMAT 650

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G    V  SE       GK  +++  ++++  V    G+  V +   + K++ F    
Sbjct: 651 ASGTVKKVALSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETD 710

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR  + ++G    VI   I    T ++     Y +          +RGG 
Sbjct: 711 VRAMGRTAAGVRGMTLQEG--RKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQ 768

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G  + +
Sbjct: 769 GVIAIQTSARNGAVVGA 785


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 257/713 (36%), Positives = 387/713 (54%), Gaps = 60/713 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+ + +  +K
Sbjct: 69  EGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQHRK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGDSAAA RYTEA
Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTEA 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L G+ +D VDF D Y+  + EPVV PS+FPNLL +G +GIAVGMAT IP H
Sbjct: 189 RMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEIPPH 248

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +A   N EI+ E+L+ +I GPDFPTG  I+  +  I++ Y  G+G   VR+
Sbjct: 249 NLSETINATIAFARNNEITTEELMIHIKGPDFPTGATILGVK-GILDMYETGKGKIPVRS 307

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           +  +EE   G   I+VTEIPY V+K+ +IEKI EL   K +  + ++RDES  E +RIV+
Sbjct: 308 KTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRIVI 367

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  +P +L+  +F  S ++T    N+  L  G  P+++ L  IL  +L H+ EV+ 
Sbjct: 368 DVK-KGFNPHVLLNKLFQKSYLQTNVNANLVALVNGE-PKLLNLKQILNIYLNHQIEVVT 425

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR  F ++    ++ IL GL IA  NIDE++ II+   N+   +  + +RF+LTE Q  A
Sbjct: 426 RRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTRFNLTEKQTKA 485

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++ LR L  L   ++  E+D L  E   I S+L S ++  + I  E+  +KE +    
Sbjct: 486 ILDMSLRRLTGLNIEKMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGD-- 543

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSA 542
              +RRT   E   A  +   + +I    I +  S +G+++ +K           + ++ 
Sbjct: 544 ---KRRTEIDE--SAISSISDEDLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNT 598

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHN 599
           +     D +   L   T   ++L +  G+ Y + A  +  G    +    I ++  LN  
Sbjct: 599 MKTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEK 658

Query: 600 Q-----DIVTAFVYDSTCKLLVVSSKG------------------------------NAF 624
           +      ++    Y     L+ V+  G                              NAF
Sbjct: 659 EGEKVVSLLAVETYSDEQYLVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAF 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           IVE+   I     GK  +K SS +   L     G     + E +K+L  S D+
Sbjct: 719 IVEDGNEILIASNGKNVVKFSSNDLRPLGRSSFGVRGITLAEGKKVLTASSDK 771


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 265/717 (36%), Positives = 401/717 (55%), Gaps = 65/717 (9%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N+ NS       VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++    
Sbjct: 13  ENLDNST------VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYI 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+     FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDG
Sbjct: 67  GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDG 126

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGI
Sbjct: 127 DRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGM+TSIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++   +ESY
Sbjct: 187 AVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG--IESY 244

Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              G+G   +R++  +E++   S  +VVTEIPY V K+ LIEKI EL+ A+ I  + DIR
Sbjct: 245 FETGKGNVVIRSKVEIEQLQTRS-ALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIR 303

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES+ E +R+V+  K R   P++L+  +F  + ++ RFP+NM  L  G  P ++ +   L
Sbjct: 304 DESSREGIRLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APVLLNMKQAL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + +L H+ +VL R++ F +     R  IL GLLIA LNIDE++AII+   N  +    + 
Sbjct: 362 EVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLN 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++F L E Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E
Sbjct: 422 TKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++++ + F       RR     ++S   +    +++I+ E + + +S  G+   LK   V
Sbjct: 482 LQKINDQFGDE----RRSEILYDIS---EEIDDESLIKVENVVITMSTNGY---LKRIGV 531

Query: 539 DLSALHFKEG-----------DSLKIALHAHTTDRILLLSTDGKAYT------------- 574
           D   L  + G           DS+   L   T   +L  +  GK Y              
Sbjct: 532 DAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTN 591

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
             +PA NL+      E I  L+ +N+  D    + +  T   +V  +  N FI     I+
Sbjct: 592 KGIPAVNLIKIE-KDERICSLLSVNNYDD---GYFFFCTKNGIVKRTSLNEFI----NIL 643

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
           +N   GK  +     + +  V+K  G+    +G     ++ F  +Q+  +SR  +GV
Sbjct: 644 SN---GKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 264/717 (36%), Positives = 402/717 (56%), Gaps = 65/717 (9%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N+ NS       VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++    
Sbjct: 13  ENLDNST------VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYI 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+     FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDG
Sbjct: 67  GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDG 126

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGI
Sbjct: 127 DRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGM+TSIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++   +ESY
Sbjct: 187 AVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG--IESY 244

Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              G+G   +R++  +E++   S  +VVTEIPY V K+ LIEKI EL+ A+ I  + DIR
Sbjct: 245 FETGKGNVVIRSKVEIEQLQTRS-ALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIR 303

Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES+ E +R+V+  K R   P++L+  +F  + ++ RFP+NM  L  G  P ++ +   L
Sbjct: 304 DESSREGIRLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APVLLNMKQAL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + +L H+ +VL R++ F +     R  IL GLLIA LNIDE++AII+   N  +    + 
Sbjct: 362 EVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLN 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++F L E Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E
Sbjct: 422 TKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++++ + F       RR     ++S   +    +++I+ E + + +S  G+   LK   V
Sbjct: 482 LQKINDQFGDE----RRSEILYDIS---EEIDDESLIKVENVVITMSTNGY---LKRIGV 531

Query: 539 DLSALHFKEG-----------DSLKIALHAHTTDRILLLSTDGKAYT------------- 574
           D   L  + G           DS+   L   T   +L  +  GK Y              
Sbjct: 532 DAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTN 591

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
             +PA NL+      E I  L+ +N+  D    + +  T   +V  +  N FI     I+
Sbjct: 592 KGIPAVNLIKIE-KDERICSLLSVNNYDD---GYFFFCTKNGIVKRTSLNEFI----NIL 643

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687
           +N ++  +F      + +  V+K  G+    +G     ++ F  +Q+  +SR  +GV
Sbjct: 644 SNGKRAISF---DDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 358/578 (61%), Gaps = 19/578 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL    A 
Sbjct: 1   MSEEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD+LVR+AQ F QRY LI G GNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+VAE +L+ +DE+ V FRD ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A L L++ P   ++ +++ ++ GPDFPTG  IV   E I  +Y  G+G   
Sbjct: 181 PHNLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIV-GNEGIKSAYENGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E+ GR    I++TEIPYQ+ KS+LIE+IAEL+   ++  + D+RDES +D +R
Sbjct: 240 LRAKSKIEKEGR-HKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I++  K+ + DP+L +  ++  + M++ F +N+  L   + P+VM L  IL  ++  R+E
Sbjct: 299 ILIALKSGA-DPELTLNRLYKYTSMQSSFRINLLALD-NKKPKVMGLLEILNHFIEFRKE 356

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+   + + +   + R  IL+GL IA   +D +I IIRN +   + K  +V + +++E Q
Sbjct: 357 VIKNHTKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQLNISEVQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             +IL ++L+ L  +E  ++++E   L A+ ++   +L   K     +  E++E+K+ F+
Sbjct: 417 AQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEEKTLKEYLKNELKEMKDKFA 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 +RRTT  E     +   Q  + EKE + V +S RG I+     + + S L   +
Sbjct: 477 -----DKRRTTIIEDDEKAEINKQDLIKEKEAV-VSLSYRGIIK----RNEEYSNLRAAK 526

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            D L   +   + D++L  S  G+ Y L    L    G
Sbjct: 527 NDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHG 564


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/584 (41%), Positives = 359/584 (61%), Gaps = 42/584 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RAIPD+RDG KPV RRI++AM EMGL     FKKSAR+VGEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD+LVR+AQ F  RYPLI GQGN+G++DGD  A  RYTEA++++VA  +L+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   ++E   EP V PSKFPNLL NGT+GIAVG+ATSIP HN++E+ +A + 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP +S E++LE + GPDFPTGG+I E+ + I E Y  GRG  +V+A+  VE+V  G 
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVI-ENYKDIKEIYETGRGIVQVKAKAHVEKVQGGR 250

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I+V+EIPYQV K+ LI+KIA+ + + R+  + DIRDES +D +RIV+  K R    + 
Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELK-REAKGEK 309

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +++ +F  + +   FP+N+ VL  G  P+++ +  +L+E++ HR  ++ RR+ F ++  +
Sbjct: 310 VLKKLFKYTQLRKGFPVNLVVLINGE-PKLVGIKELLREFIKHRLSIILRRTRFFLKKAE 368

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+ +++GLLIA  N+DE+I  IR      + + ++ +RF LTE Q  A+L+LRL  L  
Sbjct: 369 DRLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRLTS 428

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF-- 499
           LE  +++ E  +LL + E    ++ S   +  +I   + E + +  K    G  R TF  
Sbjct: 429 LERDKLRQEEADLLQKIEYYRKVVGS---EEERIKIFVEETENLVKK---FGDPRRTFIE 482

Query: 500 ------------CEVSRADKATLQQAMIEKE---------PIT---VVISNRGWIRSLK- 534
                         V    K    + M E E         P T    ++SNRG +  L  
Sbjct: 483 GIEEKIEEGSLVVAVLENGKVMPVENMPEGESPVVDILDVPFTEGLFLVSNRGRVYWLAG 542

Query: 535 SHSVDLSALHFKEGDSLKIA--LHAHTTDRILLLSTDGKAYTLP 576
           S ++  S ++FKE +   +   +     DR+LL + +G    +P
Sbjct: 543 SQALQGSKVNFKESEEYIVGAFIRERFADRLLLATRNGMIKKIP 586


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/647 (38%), Positives = 377/647 (58%), Gaps = 61/647 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G 
Sbjct: 4   SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 64  DWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGIAVG
Sbjct: 124 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  LA +DN +I+IE+L+EYI GPDFPT  II   R  I+++YR G
Sbjct: 184 MATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAII-NGRRGILDAYRTG 242

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +RDES
Sbjct: 243 RGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDES 302

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K  ++  ++++  +F  + M+  F +NM  L  G+ P+++ L  I+  +
Sbjct: 303 DKDGMRIVVEIKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIIAAF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS-- 419
           + HRREV+ RR+ F ++    R  IL+ L +A  NID +I +IR    P   K  +++  
Sbjct: 361 IRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQP 420

Query: 420 ---------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                            ++ LTE Q  AIL+LRL+ L  LE  +
Sbjct: 421 WDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEK 480

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +  E   LL +  ++  +L S ++  + I  E+  +K  ++       RRT   E + AD
Sbjct: 481 LLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITE-NTAD 534

Query: 507 KATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S++G+++        + +      SA   KE D +   L A+
Sbjct: 535 INI--EDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 592

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           T D IL  S+ G+ Y +    L  + RG  G  I  L+ L  ++ I 
Sbjct: 593 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERIT 639


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 249/638 (39%), Positives = 371/638 (58%), Gaps = 72/638 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSARIV
Sbjct: 11  VSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P++ P LL NG++GIAVGMAT+IP HN+ EI
Sbjct: 131 SHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNIPPHNLGEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LA+IDN +I+I++L+++I GPDFPTG  I   R  I+E+Y+ GRG   +RAR   E
Sbjct: 191 IDGCLAVIDNADITIDELIDHIPGPDFPTGAFI-NGRAGIIEAYKTGRGRIYMRARHHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   ++    R
Sbjct: 250 DMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +PD+++ +IF  + +++ F +NM  L  GR PQ++ +  IL+ ++ HRREV+ RR+ F
Sbjct: 310 GENPDVVVNNIFTQTQLQSVFGINMVALVDGR-PQLLNIKQILECFVKHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR-- 420
            ++    R  IL+GL ++  NID +I +IR      E K K V           M+ R  
Sbjct: 369 ELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVAMLERAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+ +Q  AIL+LRL  L  LE  ++  E   L+    ++
Sbjct: 429 ADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLIELIGEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            ++L++  +    I  E++EVKE F      G  R T    SR D       +I++ P+ 
Sbjct: 489 LNILSNPDRLMEVIREELQEVKETF------GDARRTEILTSRQDLTIAD--LIDEAPMV 540

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ISN G+ +S         +      S+   K+ D ++  L   + D I+L S  GK Y
Sbjct: 541 VTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVY 600

Query: 574 TL---------------PAGNLLSGRGHGEAIQLLIDL 596
            L               P  NLL  R  GE+I  L+ L
Sbjct: 601 WLRVFEIPVASRSAKGRPIVNLLPLR-EGESISALLPL 637


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/706 (35%), Positives = 401/706 (56%), Gaps = 52/706 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           AR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  +++R+ L+E Q  
Sbjct: 360 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS  
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSDE 479

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L              +
Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++    D   ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGETIQTIINVQAEHDD-NSYLFFTTRYGVVKRTSVTEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
             E+++  V    G    ++G      + F+  Q+  M R   GVR
Sbjct: 642 KDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNMGRAATGVR 687


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/659 (37%), Positives = 381/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G+  G  +
Sbjct: 5   IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGITAGKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVMHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+I IIR   + K     ++SR        
Sbjct: 362 VIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISRPWKLNNEI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QVDAIL LRL  L  L   ++ +E   LL +
Sbjct: 422 LGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEYKELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  ++NS ++    I  E+ +V+  F+       RRT   E++ A      + +I +
Sbjct: 482 IAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     ++A+  D   K +++++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEED---KFVIMATAG 649


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 10  DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q  
Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ E+K  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEIKRKFADD 486

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K     +
Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D +K  +   T DR+L  +  G+ Y                LP  NLL    
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE IQ +I++  ++    ++++ +T   +V  +    F        AN R+ G   L +
Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V    G    ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/635 (39%), Positives = 369/635 (58%), Gaps = 59/635 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALI++P +SIE+L+E+I GPDFPT   IV  R+ I+++Y+ GRG   +RAR
Sbjct: 187 LTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAA-IVNGRKGIIDAYKTGRGRAVMRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L +A  NID IIA+I+    P    V                
Sbjct: 364 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGML 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                +++ LTE Q  AIL LRL  L  LE  +I +E + LL  
Sbjct: 424 EKAGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EV E F      G +R T    +  D +   + +I +
Sbjct: 484 IAALLLILSSPQRLMEVITEELHEVLENF------GDKRRTVINANEVDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +  +L  +          +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI 602
           GK Y L    L L+ R   G  I  L+ L+  + I
Sbjct: 596 GKMYWLKVYQLPLASRTARGRPIVNLLPLSEGERI 630


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 63  SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   + +      
Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G+ ++    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621
           A+  LI+L  ++   +I+    +D +  L+  +  G
Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/607 (39%), Positives = 366/607 (60%), Gaps = 26/607 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+  D+   +KK
Sbjct: 5   EKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE 
Sbjct: 65  SARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYTEI 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A+ +++ +D++ VD    Y+E  +EP + P+K P LL NG+SGIAVGMATSIP H
Sbjct: 125 RLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ EA   LIDNP+I+ E+L++ + GPDFPT GII   R  I ++Y  GRG  +VRA
Sbjct: 185 NLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGII-HGRSGIYDAYSTGRGKVKVRA 243

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           R  VE   +  S  IVVTE+PY V K+ LIEKIAELI  K+I  +  +RDES  E +RI 
Sbjct: 244 RVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRIA 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K   +   +++  ++  + ME+ F +    +   R P+V+ L  IL+ ++ HR++++
Sbjct: 304 LGLKKDQMSK-IIINHLYKHTRMESTFGIIFLAVVNNR-PEVLTLKQILEYFVLHRKDII 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            +R+ F ++  + R  IL+GL +A  NIDE+I +I+    P   K  ++SRF +T  Q  
Sbjct: 362 IKRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISRFDMTPIQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+L++RL+ L  LE  +I  E DNLL +  +   +L S     N I  E+ ++K  +   
Sbjct: 422 AVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREILASETLVLNIIKDELTQIKNEYG-- 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
            DL  RRT    +   +  +++  ++E E + V +S  G+I+   +   +         +
Sbjct: 480 -DL--RRTEI--IDETENISIEDLIVE-EDMVVTVSKDGYIKRTPASIYNSQSRGGKGKT 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           A+  KE D + +   A T    L  +  GK Y     ++  +GR   G+AI  L++    
Sbjct: 534 AMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAGRTSKGKAIVNLLNFAEG 593

Query: 600 QDIVTAF 606
           + + T  
Sbjct: 594 EKLTTVL 600


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ + ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++ +F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMGKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F   
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
               +RRT   E+   +  TL+ + +IE+  + + +S++G+I+ L        K     +
Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSDKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
                K+ D ++  +   T D +L  +  G+ Y                LP  NLL    
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644
            GE+IQ +I++   +    A+++ +T   +V  +    F        AN R+ G   L +
Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             E+++  V+    D   ++G      + F+   +  MSR   GVR  + +DG
Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLRDG 694


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ Q  A
Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643
           GE IQ +I+++  +        +    L  V+ KG   +V+ + +   AN R  G   L 
Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692
           +  E+++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 369/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE +S +     RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYSDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/706 (35%), Positives = 401/706 (56%), Gaps = 40/706 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIGK
Sbjct: 81  MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIGK 140

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L+
Sbjct: 141 YHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 200

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA   
Sbjct: 201 DLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEATCY 260

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+ ++++L++ + GPDFPTG +I+ + E I +SY  GRG   VRA+  VE    G 
Sbjct: 261 LIDHPDATVDELMQIMPGPDFPTGALIMGT-EGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V TEIPY V K  L EKIA L+  KRI  + D+RDES +    ++    + + P ++
Sbjct: 320 SRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F  N N+  +  VP+ + L  +L+ ++ H+ +V+ RR+ F ++    
Sbjct: 380 LNNLYKYTSLQTTFGAN-NLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+G LIA  +IDE+I+IIR+   + +    ++ RF  +  Q  AIL ++LR L  L
Sbjct: 439 RAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLTGL 498

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ ELD L       + LL   ++    I  E+RE+   F       +RRT   ++
Sbjct: 499 ERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGD-----KRRT---QI 550

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           +  +K    + +I  E + V I++ G++        R+ K     +S ++ KE D +   
Sbjct: 551 THVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEM 610

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT-----AFV 607
             A T + +L  S+ GK Y L    L  G  +  G AI  L+     + I +     AF 
Sbjct: 611 FIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCRAFP 670

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIA---NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
            D    L+  ++ G   +V+++ + A   + R G   + + + +++  V +V  GD + +
Sbjct: 671 EDEY--LMFATASG---MVKKTAMAAYDRSRRDGLIAINIKAGDRLLGVRRVKPGDKIIM 725

Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
                K ++F  DQ+    R   GVR  + K G  ++V+  +I  G
Sbjct: 726 ATTAGKAIMFCEDQVRATGRDTSGVRGITMKGG--TEVLGMEITNG 769


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 351/569 (61%), Gaps = 24/569 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIV
Sbjct: 13  VKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 73  GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+
Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L+DNP+ + E L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+  +E
Sbjct: 193 ISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVL-GKSGIRKAYETGKGTIIVRAKVDIE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           E   G   I+V EIPY V K++LIE+IAEL   K I  + D+ DE+  E +RIV+  + R
Sbjct: 252 ETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREGMRIVIDVR-R 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL  +L H+ EV+ RR+ F
Sbjct: 311 DASAEVILNNLYKMTMMQTTFNFNMLAIVKG-APKILSLKEILTYYLEHQEEVVRRRTEF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  I++GL IA  +IDEII IIR        K  ++S++ L++ Q  AIL++R
Sbjct: 370 ELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYGLSDRQAQAILDMR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I++E   L+        +L   ++    I  E++E++  F  +     R
Sbjct: 430 LVRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYDELKEIQRRFGDA-----R 484

Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSHS---VDLSALHFK 546
           RT   E+   D   L+ + +IE++ I V +++ G+I+ L     KS +     +  +   
Sbjct: 485 RT---ELQVGDITNLEDEDLIEQQDIVVTLTHNGYIKRLPVDEFKSQNRGGRGVKGMGVH 541

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             D ++  + + T D +L  +  GK +++
Sbjct: 542 SDDFIEHLISSSTHDMLLFFTNSGKVFSM 570


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/728 (35%), Positives = 411/728 (56%), Gaps = 87/728 (11%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYI-NGTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
            E+   G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D +R+V+  K
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+
Sbjct: 309 -RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R             
Sbjct: 367 IFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEG 426

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 ++LTE Q +AIL LRL  L  LE+ +I +E   L+   
Sbjct: 427 VDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERI 486

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + +  +L+   +    +  E+ E+++ +      G  R +   VSR D    ++ +I +E
Sbjct: 487 KYLIGILSDVSELIRVVKEELVEIRDNY------GDERKSEIIVSRLD--LTREDLITEE 538

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S  G++++         K   V  SA   KE DS+   + A T D +L  S+ G
Sbjct: 539 DMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLG 598

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
                K Y  P  + +S    G  I  ++ L+ N+ I TA +    +     + + +  G
Sbjct: 599 RVYWSKVYDFPVASRIS---KGRPINNILPLDKNERI-TALMPISEFTEGWYVFMSTKLG 654

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               V+ SE       GK  + ++  +++         +VA+   N+++++FS       
Sbjct: 655 RVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMFS------- 699

Query: 682 SRGKGVRL 689
             GK +R 
Sbjct: 700 DAGKAIRF 707


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/728 (35%), Positives = 411/728 (56%), Gaps = 87/728 (11%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG  I    + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYI-NGTDGILEAYKTGRGRVIMRAKVDI 248

Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
            E+   G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D +R+V+  K
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR+EV+ RR+
Sbjct: 309 -RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R             
Sbjct: 367 IFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEG 426

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 ++LTE Q +AIL LRL  L  LE+ +I +E   L+   
Sbjct: 427 VDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERI 486

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + +  +L+   +    +  E+ E+++ +      G  R +   VSR D    ++ +I +E
Sbjct: 487 KYLIGILSDVSELIRVVKEELVEIRDNY------GDERKSEIIVSRLD--LTREDLITEE 538

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S  G++++         K   V  SA   KE DS+   + A T D +L  S+ G
Sbjct: 539 DMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLG 598

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
                K Y  P  + +S    G  I  ++ L+ N+ I TA +    +     + + +  G
Sbjct: 599 RVYWSKVYDFPVASRIS---KGRPINNILPLDKNERI-TALMPISEFTEGWYVFMSTKLG 654

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               V+ SE       GK  + ++  +++         +VA+   N+++++FS       
Sbjct: 655 RVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMFS------- 699

Query: 682 SRGKGVRL 689
             GK +R 
Sbjct: 700 DAGKAIRF 707


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 265/727 (36%), Positives = 401/727 (55%), Gaps = 67/727 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+ L +A  NID II +IR    P    V+               
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 716 RTATGVR 722


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ Q  A
Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643
           GE IQ +I+++  +        +    L  V+ KG   +V+ + +   AN R  G   L 
Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692
           +  E+++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/615 (37%), Positives = 374/615 (60%), Gaps = 31/615 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIY-GYDGVREAFKTGRGRVVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+V+EIPYQV K+ +I+K A+L+  K+I  +  IRDES      +++
Sbjct: 244 KAIIEEV-KGRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  GR P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGR-PEMLNLKDMIHHFVDHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF LTE Q  AI
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDRFELTEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E + LL   E +  +L   +++ + I  E+ E++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLREEYEELLKTIEDLKDILARKERRMDIIKEELEEIRAKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549
            G  R T  +++  D +     +I  E + + IS+ G+++  SL  +         ++G 
Sbjct: 477 -GDERRTDIDIAGGDVSITD--LIPDEKVVLTISHAGYVKRTSLMEYKTQNRGGVGQKGS 533

Query: 550 SLKIA-----LHAHTTDRILLLSTD-GKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
           + +       L   T  + L+  T+ GK      + +P G+  S    G AIQ LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSKTS---KGRAIQNLINIEP 590

Query: 599 NQDIVTAFVYDSTCK 613
           + D V AF+  +  K
Sbjct: 591 D-DKVKAFICTNDLK 604


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/753 (34%), Positives = 427/753 (56%), Gaps = 32/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++K ARIV
Sbjct: 10  VDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGYRKCARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LVRLAQ F  RY L++G GNFG++DGDSAAA RYTEA+M ++
Sbjct: 70  GDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYTEAKMNKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ ++++ VDF   ++ E+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 130 TLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIPPHNLTEV 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                 LIDNPE++I +L+  I GPDFPT GII+  +  I ++Y  GRG   VRA+  +E
Sbjct: 190 INGISMLIDNPEVTITELMTEIKGPDFPTAGIIL-GKLGIRDAYETGRGKVIVRAKTDIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   I+VTEIPYQV K++LIE IA+L+  K+I  + DIRDES  E +RIV+  K R
Sbjct: 249 E-EKGRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIVIELK-R 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P++++  ++  + M+  F + M  L   + P+V+ L  IL  +L  ++EV+ RR+ F
Sbjct: 307 DANPNVILNQLYKHTKMQDTFGIIMLALVNNK-PEVLNLKQILVHYLEFQKEVIRRRTKF 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +     R  IL+GL IA  +IDE+I +IR   N ++ K  +++ F+L+E Q  AIL++R
Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQAQAILDMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I++E   L      +  +L   +     I  E+ E+K  +        R
Sbjct: 426 LQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGDD-----R 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
           RT   E+ + D     + +I+++ + V +++ G+I+ + + +          + A+  KE
Sbjct: 481 RT---EIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGIQAMTTKE 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHN-QDI 602
            D ++      T + IL  +  G+ Y L    L       + + L+    I+ N   Q +
Sbjct: 538 DDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIETNEKIQAV 597

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
           +T   +D T   ++ + +G     + S+  +  + G   + +  ++++  V   TG+  +
Sbjct: 598 ITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRMTTGESEI 657

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V  +N   + F+   +  M R   GV+  + +   I+ V    +CEG   +  +   + 
Sbjct: 658 LVFTKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIA-VAMDIVCEGQDVLVISENGFG 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +          +RGG G +  K   ++G  + +
Sbjct: 717 KRTPVSEYTPHRRGGKGMITYKITEKTGAIVGA 749


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 398/726 (54%), Gaps = 66/726 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRI++ M E G     +++KSAR 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP+++ E+++E+I  PDFPTGG+I+  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLIL-GRSGARKAYLEGRGSVIVRAKTVV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV+ EIPYQV KS +I++IAE    KRI  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  +F  + M+T F  NM  L+ G+ P+ + L   L  ++  R EV+ RR++
Sbjct: 323 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLRAFLVAFVDFREEVIARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420
           F ++    R  IL GL +A  NIDE++A IR      D    +M  R             
Sbjct: 382 FELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLI 441

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S 
Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+ EV++ F+       RRT   + S        + +IE+E + V +++ G
Sbjct: 502 DRILQIIRDELTEVRDQFAVP-----RRTQIVDWS---GDMDDEDLIEQEDMVVTVTSGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ +     LS++  KE D +     A+T  ++L  +TDG AY L    L
Sbjct: 554 YIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 613

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
             G     G+AI  ++ +     +      D         +++  +S G+      S+  
Sbjct: 614 PLGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFT 673

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG------ 684
                GK  +K+  E  + +  ++    D V ++ ++ + + F    +  + +G      
Sbjct: 674 NVKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDV-RVFKGRDSTGV 732

Query: 685 KGVRLQ 690
           +G+RLQ
Sbjct: 733 RGIRLQ 738


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/660 (38%), Positives = 385/660 (58%), Gaps = 67/660 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D +RIV+
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ M+  F +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ F ++    R  IL+GL IA  N+D II +IR   N +  K  +++R          
Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + LTE Q  AIL+LRL+ L  L   +I  E   LL 
Sbjct: 423 LAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLD 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I 
Sbjct: 483 AIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
            G+ Y L    L  + RG  G  I  ++ LN N+ I     V A+  D   K +V+++ G
Sbjct: 595 RGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMATAG 651


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ Q  A
Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643
           GE IQ +I+++  +        +    L  V+ KG   +V+ + +   AN R  G   L 
Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692
           +  E+++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 271/747 (36%), Positives = 410/747 (54%), Gaps = 106/747 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+  A+KKSA
Sbjct: 8   ITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDS AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ E  LA ID+  IS+E L+ +I GPDFPTG II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGR-GIAEAYRTGRGKIYLRARA 246

Query: 257 -CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V +       I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDES +D   V+  
Sbjct: 247 EVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L  G+ P+++PL  IL+ +++HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQ-PKILPLKEILQSFVSHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408
           + F ++    R  IL+ L++A  +ID II +IR                           
Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425

Query: 409 -----------NEDKPKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                      NED  +P  + +        + LTE Q  AIL+LRL+ L  +E  ++  
Sbjct: 426 RSSGDQITIGRNEDA-RPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLD 484

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRA 505
           E  +LL +  ++ S+L + ++    I  E+  +KE +        RRT       E++  
Sbjct: 485 EYKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDP-----RRTNIIVNNLEINNE 539

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557
           D       +I +E + V +S++G+++        + +      SA   K  D +   L A
Sbjct: 540 D-------LINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVA 592

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFV---- 607
           +T D IL  S+ G     K Y LP     + RG  G  I  L+ L  N+ I TA +    
Sbjct: 593 NTHDTILCFSSKGSLYWMKVYQLPE----ASRGARGRPIINLLPLKENERI-TAILPVRE 647

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTGDHVAVVGE 666
           YD+   + + ++ G   IV+++ +   +R  K   + ++  E  +L+       VA+   
Sbjct: 648 YDAGHHVFMATACG---IVKKTALDCFSRPRKDGIIAINLNEGDELI------GVALTDG 698

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           + ++++FS D       GK VR    K
Sbjct: 699 SNEVMLFSTD-------GKAVRFSESK 718


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/647 (38%), Positives = 377/647 (58%), Gaps = 61/647 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G 
Sbjct: 4   SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 64  DWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVG
Sbjct: 124 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  LA +DN +I+IE+L+E+I GPDFPT  II   R  I+++YR G
Sbjct: 184 MATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAII-NGRRGILDAYRTG 242

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +RDES
Sbjct: 243 RGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDES 302

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K  ++  ++++  +F  + M+  F +NM  L  G+ P+++ L  I+  +
Sbjct: 303 DKDGMRIVVEIKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIISAF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS-- 419
           + HRREV+ RR+ + ++    R  IL+ L +A  NID +I +IR    P   K  +++  
Sbjct: 361 IRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQP 420

Query: 420 ---------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                            ++ LTE Q  AIL+LRL+ L  LE  +
Sbjct: 421 WDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEK 480

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +  E  +LL +  ++  +L S ++    I  E+  +K+ ++       RRT   E + AD
Sbjct: 481 LLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDP-----RRTEITE-NTAD 534

Query: 507 KATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S++G+++        + +      SA   KE D +   L A+
Sbjct: 535 INI--EDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 592

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           T D IL  S+ G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 593 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERIT 639


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 398/711 (55%), Gaps = 47/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q  
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ +
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT                  E   IT  +SN+G+I        RS K     + 
Sbjct: 480 -----RRTELMVGEVVSLEDEDLIEEEDIVIT--LSNKGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+  
Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V    G+   ++G      + F  D I  MSR   GV+  + +DG
Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 362/603 (60%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   RE I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGREGIIEAYRTGRGRIYMRARSIIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQAVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419
           F ++    R  IL+G  +A  NID +IA+I+    P   K  ++S               
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVMTMVERA 428

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                              ++ L+  Q  AIL LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +        RRT   + +R D  TL   MI +E  
Sbjct: 489 LIRILNSATRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D +   L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 63  SAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   + +      
Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G+ ++    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621
           A+  LI+L  ++   +I+    +D +  L+  +  G
Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 382/658 (58%), Gaps = 34/658 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++    +     +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I   I + K + ++ 
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 531

Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537
            D  RR     E+   D+  L   +Q +I       V         + NRG I +L S+ 
Sbjct: 532 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN- 589

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595
                 H+K+ D LK     +T   +L++S+  K + L A  +  G   G+ I +  LI 
Sbjct: 590 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 642

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L  N+ I     ++       L+ VS+ GN      S     T+ GK  LK++  + +
Sbjct: 643 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYL 700


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 260/751 (34%), Positives = 424/751 (56%), Gaps = 32/751 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L+  +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M +  L     ++KSA IV
Sbjct: 13  VDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTPDKPYRKSATIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LV++AQ F  RYPL+ G GNFG+IDGDSAAA RYTE+RM ++
Sbjct: 73  GDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTESRMEKL 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ ++++ VD    Y+E + EP V P+++PNLL NG++GIAVGMATSIP HN+ E+
Sbjct: 133 SMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLGEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + LIDN + ++E +L++I GPDFPTG  I+    S++++YR GRG    RA+   E
Sbjct: 193 IDAVVELIDNEDATLEDILKHIKGPDFPTGAHIM-GNSSMLQAYRTGRGKVVQRAKTSFE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+  G   IVVTEIPYQV K+RL+EKIAEL+  KRI  +  I DES      ++    R 
Sbjct: 252 EMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKGMRIVIELRRD 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++PD+++  +F  S ++  F + M  L +  +P+V+ L+ +L+ +L H+ EV+ RR+ F 
Sbjct: 312 VNPDIVLNQLFKFSPLQQVFSIIMLAL-VNNIPKVLTLEQMLRLYLKHQEEVVTRRTQFD 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRS 438
           ++    R+ +++GLL A  +IDE+IAIIR+        ++ RF  +E Q  AIL+++LR 
Sbjct: 371 LKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMERLMERFDFSEIQAKAILDMQLRR 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L+ LE+ +++ E  +L  + +    +L+      + I  EI E+K  +        RRTT
Sbjct: 431 LQGLEKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYGNE-----RRTT 485

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDS 550
           F   S  D     + MI  + +TV +++ G+I+ +        K     ++++  ++ D 
Sbjct: 486 FL-ASYEDIDI--KDMIPDDEVTVTLTHLGYIKRVGIDTYKTQKRGGKGIASMSTRDEDF 542

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +   L      +++  +  G+ Y L    +   S    G  I  ++ L   + + T    
Sbjct: 543 VDKLLLTSNHSKVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLEDGEKVNTMLSI 602

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
                S+  +++ + KG        E   + R G   + +  ++++  V    G+ ++  
Sbjct: 603 REEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGVELTDGNCNIIC 662

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYN 720
           V  N K ++F    I  M R  +GVR  + ++G   +++   I   E    I S  R Y 
Sbjct: 663 VARNGKAIMFDESDIRSMGRTAQGVRAMNLEEG--DEIVSMMIADPEKDVLIISE-RGYG 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +        L  RGG GS   K   ++G+ +
Sbjct: 720 KRTPIAEYNLQTRGGKGSRTYKITEKTGRLV 750


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 398/711 (55%), Gaps = 47/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q  
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ +
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT                  E   IT  +SN+G+I        RS K     + 
Sbjct: 480 -----RRTELMVGEVVSLEDEDLIEEEDIVIT--LSNKGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+  
Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V    G+   ++G      + F  D I  MSR   GV+  + +DG
Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/615 (39%), Positives = 378/615 (61%), Gaps = 40/615 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 63  SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   + +      
Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G+ ++    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583

Query: 589 AIQLLIDLNHNQDIV 603
           A+  LI+L  ++ I+
Sbjct: 584 AVVNLINLRPDEKIM 598


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 252/695 (36%), Positives = 377/695 (54%), Gaps = 61/695 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G DN       + + +  +++   ++  YL YA+S I  RAIPD RDG KPVHRRI++ M
Sbjct: 18  GADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTM 77

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++K A  VG+V+G+ HPHGDQ+VYDSLVRLAQ +  R PLI GQGNFG++
Sbjct: 78  HENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSV 137

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AAYRYTEARM +VA+ +L  +D+D V+F D Y+ E  EPVV P+++PNLL NG  
Sbjct: 138 DGDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAG 197

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++P HN+ E+ +  LAL++NP ++  +LL+YI GPDFPTGG+I+  R     
Sbjct: 198 GIAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLIL-GRTGARN 256

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +   GRG   +R+R  +EEV +    I+V EIPYQV K+ +IEKIA+L+  K+I  + D+
Sbjct: 257 AVLTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADL 316

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R  + D+++  +F  S M+T F  NM  L  GR PQ++    IL
Sbjct: 317 RDESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLVGGR-PQLLGALDIL 375

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------- 414
           KE+L  R EV+ RR+ F +     R  ++ GL +A  NIDE+IA+IR    P        
Sbjct: 376 KEFLRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLM 435

Query: 415 ----PVM------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
               P M                   +   LTE Q  AIL LRL  L  L   ++ +E  
Sbjct: 436 ARDWPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAK 495

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  +   +  LL S ++  + I  E+ EV+E ++       RR+ F +   A+     +
Sbjct: 496 TLADQIADLLDLLRSRQRVLDIIRDELTEVRENYATP-----RRSEFVD---AELDFEDE 547

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I ++ + V +++ G+         R+ +      S +  K+ D +     A T   +L
Sbjct: 548 DLIPRDEMVVTVTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLL 607

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----K 613
             S  G     K + LP G   +    G+A+  L+ L   + I  + A   D +      
Sbjct: 608 FFSNRGMVYKTKTWRLPLG---APNTRGKALINLLPLEQGETITSIMALPEDESTWADMN 664

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           ++  ++KG     + S+ +   R GK  +K+  E+
Sbjct: 665 VMFATNKGTVRRNKLSDFVQVNRNGKIAMKLEEED 699


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/688 (37%), Positives = 402/688 (58%), Gaps = 29/688 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ L  G ++K
Sbjct: 8   ENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD AAA RYTE
Sbjct: 68  KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAVGMAT++P 
Sbjct: 128 VKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +  ID+ +ISI  L E I GPDFPTG +I+  R+ I ++Y+ GRG   VR
Sbjct: 188 HNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIM-GRDGINKAYKTGRGKITVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S +  +RIV
Sbjct: 247 AVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIV 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K +  + ++++  ++  + ++  + +    L  GR PQ++ L  +++ ++ H+ EV+
Sbjct: 307 IDLK-KDANANVVLNKLYKETQLQITYGIINLALVNGR-PQILNLKELIRYYVDHQVEVI 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ F +   + R  I++GL IA  NID +I IIR+    K V+      FSLT+ Q  
Sbjct: 365 TRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+K+ +   
Sbjct: 425 AILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKY--- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
              G  R T  + S +D     + +I++E + + ++  G+I+ +        K     ++
Sbjct: 482 ---GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGIT 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599
           AL  KE D +K      T DR+L  +  GK Y L A  +  +GR   G A+  L++L+  
Sbjct: 537 ALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKG 596

Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I +      +D    LL+V+ KG        E     + G   +K+  ++K+  V  V
Sbjct: 597 EKITSVINVEEFDPDHYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLV 656

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            GD  + +V +  K + FS D++ +  R
Sbjct: 657 RGDEEIILVTKEGKSIRFSTDELRDQGR 684


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/713 (35%), Positives = 405/713 (56%), Gaps = 47/713 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA   +DE+I IIRN   + + +  +++RF LTE Q
Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMARFELTERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+
Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILEKPERVIAIIKEELDESKRKFA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
              D  R      EV     +   + +IE+E + + +SN+G+I        RS K     
Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584
           +      + D ++  +   T D +  ++  G+ Y                LP  NLL   
Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+
Sbjct: 590 DEGETIQTVINAKSDE-------ASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
              +++  V   TG+   V+G      + F  D I  MSR   GV+  + +DG
Sbjct: 643 REGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/727 (34%), Positives = 393/727 (54%), Gaps = 62/727 (8%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+          +++ VS+   +++ YL YA+S I  RA+PD RDG KPVHRRI+++
Sbjct: 1   MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E G      + KSAR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG+
Sbjct: 61  MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AAYRYTEAR+T+ A  +L  +D+D VDF+  Y+  ++EP V P+KFPNLL NG 
Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNP ++I++L+  + GPDFPTGG+I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y LGRG   +R +  +E + +    +++TEIPYQV K+ ++E+IAEL+  K+I  + D
Sbjct: 240 AAYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    R    D+++  ++  + ++T F +NM  L  GR P++M L  +
Sbjct: 300 LRDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGR-PRIMHLKDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  ++  R  V+ RR+ F +     R  IL GL IA  NIDE+I +IR    P   +  +
Sbjct: 359 LAIFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTL 418

Query: 418 VSR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           +SR                            L+  Q  AIL+LRL+ L  L   +I+ EL
Sbjct: 419 MSRDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S ++    I  E+ EVK  F+       RRT   E    +     
Sbjct: 479 DKLAGEIADYLDILRSRERVLGIIKTELAEVKAEFATP-----RRTVIME---QEGEVED 530

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G++        R+ +      + +  ++ D +     A T   +
Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPV 590

Query: 564 LLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DST---C 612
           L  S+ G+ Y      LP   + +    G+A+  ++ L   + I T       +ST    
Sbjct: 591 LFFSSRGQVYKEKVWRLP---MAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNL 647

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            ++  ++ GN    + S+ +   R G   +K+   E +  V   T  D V + G   + +
Sbjct: 648 DVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCI 707

Query: 672 IFSIDQI 678
            F +  +
Sbjct: 708 RFPVTDV 714


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 23/574 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++KS
Sbjct: 6   NIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 126 MTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+       IDNPEIS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R+R
Sbjct: 186 LTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIV-GKSGIRKAYETGRGKVILRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  E +RIV+ 
Sbjct: 245 AEIEE-DKGKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIVIE 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +L+ ++  + EV+ R
Sbjct: 304 LK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLRHYIKFQEEVITR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F +     R  IL+GL IA  +IDE+I +IR      + K  ++S+F L+E Q  AI
Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQATAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K      T 
Sbjct: 422 LDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIK------TK 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543
            G  R +       +   ++  +IE++ + + +++ G+I+ L        K     + A+
Sbjct: 476 YGDERKSEIIQDEGNDIDIED-LIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAM 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             KE D ++  + A T D IL  +  G+ Y L A
Sbjct: 535 TTKEDDFVEHIITASTHDNILFFTNLGRVYQLKA 568


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 716 RTATGVR 722


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +   
Sbjct: 3   NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 63  SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG 
Sbjct: 183 KIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E 
Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           FS        R T  E S  D+  ++  +I  EP+ V I++ G+++ +   + +      
Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526

Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           K G   K+A+  H            T D ++ ++  G     K Y +P G+ ++    G+
Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621
           A+  LI+L  ++   +I+    +D +  L+  +  G
Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 404/711 (56%), Gaps = 47/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q  
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+L+A    +  +L   ++    I  E+ E K  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFA-- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I        RS K     + 
Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+  
Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V    G+   ++G      + F  D I  MSR   GV+  + +DG
Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 716 RTATGVR 722


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 373/636 (58%), Gaps = 61/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA +DN +I+IE+L+EYI GPDFPT  II   R  I+++YR GRG   +RA+ 
Sbjct: 188 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAII-NGRRGILDAYRTGRGKIYIRAQA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 DIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  +F  + M+  F +NM  L  G+ P+++ L  I+  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIIAAFIRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L +A  NID +I +IR    P   K  +++            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAML 424

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL 
Sbjct: 425 ERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLL 484

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++  +L S ++  + I  E+  +K  ++       RRT   E + AD     + +I 
Sbjct: 485 QIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITE-NTADINI--EDLIN 536

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+
Sbjct: 537 EENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 596

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
            G+ Y +    L  + RG  G  I  L+ L  ++ I
Sbjct: 597 RGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERI 632


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 382/658 (58%), Gaps = 34/658 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++    +     +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I   I + K + ++ 
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516

Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537
            D  RR     E+   D+  L   +Q +I       V         + NRG I +L S+ 
Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN- 574

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595
                 H+K+ D LK     +T   +L++S+  K + L A  +  G   G+ I +  LI 
Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L  N+ I     ++       L+ VS+ GN      S     T+ GK  LK++  + +
Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYL 685


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 382/668 (57%), Gaps = 72/668 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A +AL+DNPE+S+++++E I GPDFPT  II   R  I++ YR G+G   +RAR 
Sbjct: 188 TEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAII-NGRAGIIQGYRTGKGRVVIRART 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +       I++ E+PYQV K+RL+E+IAEL+  K+I  +  +RDES +    V+  
Sbjct: 247 EIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+   D+++ +++  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ RR
Sbjct: 307 IKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV----- 418
           + F ++    R  +L+GL IA  NIDE+IA+I+    P            +P MV     
Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                               + + L+  Q  AIL LRL  L  LE+ +I  E + LL   
Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++  +L S ++    I  E+ E+K      T  G  R T    S+ D     + +I +E
Sbjct: 486 KELLDILASPERLMQVIRDELLEIK------TQFGDERRTEITASQEDLTI--EDLITEE 537

Query: 519 PITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++   L ++          SA + K+ D +   + A T D +L  S  G
Sbjct: 538 NVVVTLSHQGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHG 597

Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                KAY LP  + +S GR          GE I  ++ +   Q+    +V+ +T    V
Sbjct: 598 KLYWLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQE--GFYVFMATRNGTV 655

Query: 617 VSSKGNAF 624
                NAF
Sbjct: 656 KKVPLNAF 663


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 330/508 (64%), Gaps = 14/508 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +KSARIVG+V+GK HPH
Sbjct: 88  FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEARM++VA L+L+G+ +
Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTEARMSKVAALMLEGIKK 207

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E  +A +AL  N
Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALAKN 267

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEISI +++E++ GPDFPTG +I+ ++  I E+Y  G+G   VR+   +E +  G   I+
Sbjct: 268 PEISISEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLQNGKSRII 326

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  + +RI++  K   + P++++  
Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ RR  F +   + R+ 
Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLRFDLNKANDRMH 444

Query: 389 ILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  NIDE+I II++   +   +  + +RF L+E Q  AI+++RL  L  L   
Sbjct: 445 ILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSARFDLSEKQTKAIVDMRLGRLTGLAVD 504

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +  E+ NL AE E+I ++L +     + I  E+ E+K  ++       RRT   +   A
Sbjct: 505 GMIEEMQNLAAEIERITNILANRDLLIDLIIDELTEIKNKYAD-----ERRTVIDKNISA 559

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL 533
             +   + +I K  I +  S +G+++ +
Sbjct: 560 --SINDEDLISKRDIVITTSTKGYVKRI 585


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/602 (39%), Positives = 354/602 (58%), Gaps = 56/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+  A+KKSAR+V
Sbjct: 11  VNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +D++ VDF   Y+  +  P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+
Sbjct: 131 AHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LALIDN E++ E++LE+I GPDFPT GII   R  I E+YR GRG  ++RAR  ++
Sbjct: 191 INACLALIDNSELTFEEILEHIPGPDFPTAGII-SGRAGIEEAYRTGRGKIKIRARASID 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
                G   I+V E+PYQV K+RLIEK+AEL+  KR+  +  +RDES +D   ++    R
Sbjct: 250 VHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ L+ M+  F LNM  L+ G+ P++  +  +L+ ++ HRREV+ RR+ F
Sbjct: 310 GEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  IL+GL IA  NID II +I+N +  K                  M+S   
Sbjct: 369 ELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + LT  Q  AI++L+L  L  +E  +I SE   LL    ++
Sbjct: 429 NDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAEL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L +   +  ++ CE     E+ +   + G  R T  E++ A      + +I +E + 
Sbjct: 489 MHILAT-PARLMEVICE-----ELVAIRDEFGDERRT--EITNASHDLSLEDLITEEDVV 540

Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++        + +      +A   KE D ++  L A+T D IL  S  GK Y
Sbjct: 541 VTLSHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLY 600

Query: 574 TL 575
            L
Sbjct: 601 WL 602


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/636 (39%), Positives = 368/636 (57%), Gaps = 66/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSAR+V
Sbjct: 11  VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM +V
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMARV 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI+NP+I+I++L++YI GPDFPT  II   ++ I ++Y+ GRG   +RA+  VE
Sbjct: 191 INGCLALINNPDITIDELIDYIPGPDFPTAAII-SGKKGIEQAYKTGRGKVYIRAKAEVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              RG   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K R
Sbjct: 250 TDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVEIK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++  + M+T F +NM  L  G+ P+++ L  +L  ++ HRREV+ RR+ F
Sbjct: 309 GEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQ-PKLLNLKEMLHAFVVHRREVVTRRTVF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R   L+GL IA  NID II +IR    P   K  +++R               
Sbjct: 368 DLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLERTG 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  +I +E   LL    +
Sbjct: 428 ESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLIAE 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+   KE +        RRT     + A   +L+  +I +E +
Sbjct: 488 LLHILSSPERLLEVIRDELALAKEQYGDE-----RRTVIT--AAAHDISLED-LINEEDV 539

Query: 521 TVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570
            V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  ST G  
Sbjct: 540 VVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRL 599

Query: 571 ---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
              K Y LP   L S    G+ I  L+ L  N+ I 
Sbjct: 600 YWLKVYQLP---LASRAARGKPIINLLPLEANERIT 632


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/637 (39%), Positives = 370/637 (58%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L++YI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 247 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDIISAFVCHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L +A  NID II +IR                          
Sbjct: 365 RTIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        V   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +K  +S +     RRT   E + AD     + +I +
Sbjct: 485 IGELLFILENPERLMEVIREELLAIKAQYSDA-----RRTEITE-NTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  + RG  G  I  L+ L  N+ I  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITA 633


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       I++ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/620 (39%), Positives = 371/620 (59%), Gaps = 59/620 (9%)

Query: 5   NISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            I N  ++ E  + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMS
Sbjct: 13  TIRNQASMGELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMS 72

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++D
Sbjct: 73  ELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVD 132

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SG
Sbjct: 133 GDSAAAMRYTEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSG 192

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  LALIDN +I+I++L+++I GPDFPT GII   R  I+E+
Sbjct: 193 IAVGMATNIPPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGII-NGRAGIIEA 251

Query: 243 YRLGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           YR GRG   +RAR  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + +
Sbjct: 252 YRTGRGRIYIRARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITE 311

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES +D   V+    R   P++++ +++  + +++ F +N+  L  G+ P+ + L  +
Sbjct: 312 LRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKEL 370

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ ++ HRREV+ RR+ + ++    R  IL+G  +A  NID +IA+I+    P   K  +
Sbjct: 371 LEAFVRHRREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDAL 430

Query: 418 VS----------------------------------RFSLTENQVDAILNLRLRSLRKLE 443
           +S                                  ++ L+  Q  AIL+LRL  L  LE
Sbjct: 431 ISTAWESSAVEAMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLE 490

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++ +E   +L +  ++  +L +  +    I  E+  VK  F  +     RRT   E S
Sbjct: 491 HEKLLAEYQEILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE-S 544

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIAL 555
           R D  TL   + E+E + V IS+ G+ +S  L ++          +A   KE D ++  L
Sbjct: 545 RLD-LTLADLITEEERV-VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLL 602

Query: 556 HAHTTDRILLLSTDGKAYTL 575
            A++   +LL S+ GK Y L
Sbjct: 603 VANSHTTLLLFSSKGKVYWL 622


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 380/644 (59%), Gaps = 39/644 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ M ++G+  G  +KKSARIV
Sbjct: 20  INIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSARIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+IDGD  AA RYTEAR+ ++
Sbjct: 80  GDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARLKKI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +++D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++  HN+ E+
Sbjct: 140 AEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNLSEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A IDN EI I +L++YI GPDFPTGGII      + E+   GRG   +RA+  +E
Sbjct: 200 VDGTIAFIDNREIEISELMQYIKGPDFPTGGIIY-GYNGVKEACETGRGRVVMRAKAEIE 258

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +IRDES  +   V++   R 
Sbjct: 259 TTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIKRD 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++ +++  + ++T F +N   L  GR P +M L  ++ E++ HR EV+ RR+ F 
Sbjct: 319 ANANVVLNNLYKYTALQTSFSVNNIALVKGR-PMMMNLKDMIHEFVEHRHEVVIRRTKFE 377

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436
           +   ++R  IL+G LIA  ++DE+I +IR  + P+     ++ RF+L++ Q  AIL++ L
Sbjct: 378 LAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQARAILDMTL 437

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE  +IK E + L+   E +  +L+    +   I  E+ E+K+ +        RR
Sbjct: 438 RRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE-----RR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548
           +    V  A+   ++   I+ E I + IS+  +++                    + +E 
Sbjct: 493 SII--VHSAEDMRMED-FIDDEEIVITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREE 549

Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           D  +  + A   + +L  +  G     +A+ +P G+  S    G A+Q +I++  ++ I 
Sbjct: 550 DFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTS---RGRALQNIINIPKDEKI- 605

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            A++        V++ K   ++ E + II  T+KG T  K S E
Sbjct: 606 KAYIK-------VINLKDQEYL-ENNFIIMCTKKG-TIKKTSLE 640


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 269/757 (35%), Positives = 428/757 (56%), Gaps = 57/757 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ YA+S I +RA+PD+RDG KPV RRI++AM + GL       KSA +VGEVI K
Sbjct: 13  VKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSAGVVGEVIKK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD++VRLAQ +  RYPL+ GQGNFG+IDGD AAAYRYTEAR++Q+A  +L+
Sbjct: 73  YHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARLSQIALELLR 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF+  ++   +EP V P+ FPNLL NG++GIAVGMATS+P HN+ E+ +A +A
Sbjct: 133 DIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNLSEVIDALVA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID PEI++++++ Y+ GPDFPTGG +   +  I E+Y  GRG  ++RA+   EE   G 
Sbjct: 193 MIDRPEITLDEVMTYLPGPDFPTGGRL--HKGGIREAYATGRGSLKLRAKVRQEE-KNGR 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES  + +RI +  K R  +PD+
Sbjct: 250 VVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIELK-RGANPDV 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +F  ++++T F +NM  +  G  P+V+PL  +++ +L HRR+V+ RR+ F ++  +
Sbjct: 309 VLNQLFKHTNLQTSFTVNMLAIVDGE-PRVLPLLELMRHYLEHRRQVVTRRTRFELKKAE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  +L+GLLIA  N+DE+IA+IR      + K  +++RF LTE Q  AIL++RL+ L  
Sbjct: 368 ERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIARFGLTEVQAQAILDMRLQRLTG 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I++E   L      + ++L    + W  +  E+  VKE    +     RRT   E
Sbjct: 428 LEREKIQAEHRELQETIAYLRAILEDEARLWGVVKEELLAVKERHGDT-----RRTVINE 482

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
            +        + +IE EP+ + ++  G++        R+     V + A   K+ D    
Sbjct: 483 FAGGFNP---EDLIEDEPMVITMTAAGFLKRTPLEAYRAQGRGGVGVQASRSKDEDEATR 539

Query: 554 ALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT---- 604
              A+  D +L  +  G+ Y      LP     S +  G  I+ ++ L  ++++ T    
Sbjct: 540 LFVANMHDDLLFFTNKGRVYREKVFELPEA---SRQARGVHIRSILPLAEDEEVATLLSV 596

Query: 605 -------AFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKV 656
                   FV+ +   L+  +       +  S +IA N   G T ++V   ++   V+  
Sbjct: 597 RGLTIPGHFVFATRRGLIKKTPIREYQNLTASGLIAINLVDGDTLIQVGVAQEDAEVILA 656

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDVICFKICEGLTWID 713
           T         N + + F++ ++    R  +GVR    KDG   +S ++  K   G   + 
Sbjct: 657 T--------RNGQAIRFALTEVRATGRASQGVRGVRLKDGDEVVSLIVVPKGWTG-DLLA 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R Y +           RGG+G L  +  P+ G+ 
Sbjct: 708 VGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTPKVGQL 744


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 409/697 (58%), Gaps = 34/697 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKTSIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   I++TE+PY V K+RLIEKIAEL+  K+I  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++E++ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEIIVRRTRY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+     + K  ++ RF  T+ Q  AIL++R
Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQRFKFTDVQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +        R
Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547
           RT   +    D    +    ++  +T  +++ G+I+ L        K     ++ +  +E
Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVVT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            D ++      T   IL  +  G     +AY +P G   S +  G AI  LI ++ ++ I
Sbjct: 541 DDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQISKDEKI 597

Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
             T  V D     L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V +V  N   ++F+ + +  M R  +GV+  + ++G
Sbjct: 658 EVVLVSGNGYCVVFNENDVRVMGRLAQGVKGMTLEEG 694


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/657 (38%), Positives = 386/657 (58%), Gaps = 42/657 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K A+IV
Sbjct: 35  VEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCAKIV 94

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR+ +V
Sbjct: 95  GEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARLEKV 154

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN++E 
Sbjct: 155 AEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNLRET 214

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+I NPEI+I ++L+ I GPDFPT   I+   E ++ +Y  G+G  R+R++  +E
Sbjct: 215 IDAVIAVIRNPEITIPEILKIIPGPDFPT-SGIIIGGEGLISAYSTGKGSIRIRSKVEIE 273

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IVVTEIPYQV K  L+EKI +L+  K+I  + +I D S  + +R+ +  K +
Sbjct: 274 EKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHIK-K 332

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  +++  ++ ++ ++  + + M  + +   P++  +  IL  + AHRREV+ RR+ F
Sbjct: 333 DANAQVILNQLYKMTQLQVSYGITMLAI-LDNKPKIFNIKEILTAYAAHRREVIVRRTQF 391

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            +   ++R  IL+GL IA  NI+++I +IR    P   K  ++ RFSL+E Q DAIL +R
Sbjct: 392 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIRFSLSEVQSDAILEMR 451

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGR 494
           L+ L  LE  +I  EL+ +      +  +L +   + N+I C E++EV + +      G 
Sbjct: 452 LQRLTSLEVQKIIDELEEVRKLIIDLKDIL-AKPSRVNEIVCTELQEVGDKY------GN 504

Query: 495 RRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545
           +R T   +   + ++   + +I  E I + I+   +I+ L        K     +  L  
Sbjct: 505 KRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQ 564

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K  D +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ I 
Sbjct: 565 KRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYIS 624

Query: 604 TAFVY---DSTCKLLVVSSKGNAFI----------VEESEIIA-NTRKGKTFLKVSS 646
           + F +   D    LL+V+ KG  FI          V++S IIA   R+G   +KV S
Sbjct: 625 SVFTFRGEDMDKDLLLVTRKG--FIKRIQLKEFGNVKKSGIIAIGLREGDELIKVES 679


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 276/744 (37%), Positives = 411/744 (55%), Gaps = 93/744 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSAR+V
Sbjct: 11  VNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYTEIRMEKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
            +  LALI+NP++ ++ L+EYI GPDFPTG  I   R+ IVE+YR GRG   +RA+  V 
Sbjct: 191 IDGTLALIENPDLDVDGLMEYIPGPDFPTGAYI-NGRKGIVEAYRTGRGRIYMRAKADVV 249

Query: 259 --EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
             E+ GR S  I+V EIPYQV K+RLIEKIAEL+  K+I  + ++RDES  E +RI +  
Sbjct: 250 VDEKTGRES--IIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLRIAIDL 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R    D+L+ +++  + +ET F +N   L  G+ P+V+ L  +L+ ++ HRREV+ RR
Sbjct: 308 K-RGESGDVLLNNLYAQTQLETVFGINAVALVDGQ-PKVLNLKEMLEAFIRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------- 410
           + F ++   +R  IL+GL +A  NIDE+I +IR+                          
Sbjct: 366 TVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSAMLE 425

Query: 411 ----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
               D  +P        V   R+ L+  Q   IL++RL+ L  LE  ++  E   ++ + 
Sbjct: 426 RAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQIIDDI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +   +LNS ++    I  E+ EVK+ F      G  R T    SR D +   + +I +E
Sbjct: 486 GEFLRILNSYERLMEVIREELMEVKDEF------GDARKTEIMTSRLDLS--MEDLITEE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+ ++         K      SA   K+ D ++  L A + D IL  ST G
Sbjct: 538 DMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFG 597

Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           K Y L               P  NLL          +L   N + D    F++ +T    
Sbjct: 598 KVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDY---FIFMATASGT 654

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLI 672
           V  +  +AF         +  +    + +S +E   LV     D    V ++ +  K++ 
Sbjct: 655 VKKTSLDAF---------SRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVR 705

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDG 695
           F  + +  M R  +GVR  S +DG
Sbjct: 706 FKEEHVRPMGRTARGVRGISLEDG 729


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +V+            
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    + + ++ G  
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   + ++  +++  V   +G D V +     K++ F  D +  M 
Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 716 RTATGVR 722


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 362/601 (60%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNP+++I++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPDVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 364/603 (60%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDN +I+I++L+++I GPDFPT GII   R  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNADITIDELMQFIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARADIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKELLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419
           + ++    R  IL+G  +A  NID +IA+I+    P   K  ++S               
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMVERA 428

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                              ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILTQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+  VK  F  +     RRT   E SR D  TL   + E+E +
Sbjct: 489 LIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE-SRLD-LTLADLITEEERV 541

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S  L ++          +A   KE D ++  L A++   +LL S+ GK 
Sbjct: 542 -VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++    +     +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I   I + K + ++ 
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 531

Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537
            D  RR     E+   D+  L   +Q +I       V         + NRG I +L S+ 
Sbjct: 532 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 589

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595
                 H+K+ D LK     +T   +L++S+  K + L A  +  G   G+ I +  LI 
Sbjct: 590 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 642

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L  N+ I     ++       L+ VS+ GN      S     T+ GK  LK+
Sbjct: 643 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKL 694


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/631 (37%), Positives = 365/631 (57%), Gaps = 32/631 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N ++E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  + L   
Sbjct: 4   NNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLASN 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RY L+ GQGNFGNIDGD AAA 
Sbjct: 64  GPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RMT++AE +L+ ++++ VDF   ++E + EP + P++FPNLL NG+SGIAVGMAT
Sbjct: 124 RYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E  +  +A IDN EISI +L + I GPDFPTG  I+ + E I E+Y  GRG 
Sbjct: 184 NMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGT-EGIKEAYETGRGK 242

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   ++        IV+TE+PYQV KS LI KIAEL   K I  + +I D S    
Sbjct: 243 ITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRKG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++  ++  + M+T F +    L  GR P+++ L  I++ ++ H+ 
Sbjct: 303 INIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGR-PEILNLKQIIRYYVDHQV 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ F +   ++R  I++GL IA  NID II I+R   ++ + K      F LTE 
Sbjct: 362 EVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFKLTEE 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++R+R L  LE  ++++E + L A+ +    +L +     N I  E+ E+KE +
Sbjct: 422 QSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKEKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                 G  R T    +R D     + +I+KE + + ++  G+I+ +        K    
Sbjct: 482 ------GDLRRTVISHARTDIEI--EDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593
            +S+ + ++ D +K      T D IL  ++ G     KAY +P  +  S    G AI  L
Sbjct: 534 GVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTS---RGTAIINL 590

Query: 594 IDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621
           +DL+ ++    I+    YD     L+V+ KG
Sbjct: 591 LDLDEDERVTSIIPVKEYDPDLNFLMVTEKG 621


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/627 (38%), Positives = 364/627 (58%), Gaps = 58/627 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM++MG D+   +KKSAR+
Sbjct: 10  AVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE RM Q
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQ 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  ++++ V F   Y+E   EP V P+KFPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A +ALI NP +S E+LLE + GPDFPTGG I   R+ I++ Y  GRG  ++RA+  V
Sbjct: 190 IIDAIIALIHNPALSYEELLELVPGPDFPTGGTIY-GRQGIIDGYATGRGVIQIRAKAHV 248

Query: 259 EEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   +     IVVTEIPYQV K+RLI  IAEL+  K+I  + D+RDES  D   ++    
Sbjct: 249 ENSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  + ++L+  ++  + M+T F +NM  +   R P++M L  ++  ++ HRRE++ +R+ 
Sbjct: 309 KDENAEVLLNQLYKHTQMQTSFGINMLAIVHNR-PKLMSLAEMMHYFIEHRREMVTKRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFS----------- 422
           F ++  + R  IL+GL IA   +D +I +IR    P      +M  RF+           
Sbjct: 368 FELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLP 427

Query: 423 ----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     L+E Q  AIL +RL+ L  LE  +I +E +++L    ++  +L S  +  
Sbjct: 428 RPAGYEKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAEIM 487

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  E+ E+KE F       +RRT    V +    +L+   IE   + V +S+ G+I  
Sbjct: 488 KIIVGELTEIKERFGD-----KRRTEI--VHQTADISLEDT-IEDAEMVVTVSHTGYI-- 537

Query: 533 LKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
            K  +VDL           + +  +E D ++    A T D +L  S  G     K Y +P
Sbjct: 538 -KRSAVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIP 596

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            G+  +    G+A+  L+++   + I 
Sbjct: 597 EGSRTT---KGKAVVNLVNVQEGEKIT 620


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALI++  I+I+ L+E+I GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAII-NGRRGIDEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKEILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++    +     +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I   I + K + ++ 
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516

Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537
            D  RR     E+   D+  L   +Q +I       V         + NRG I +L S+ 
Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 574

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595
                 H+K+ D LK     +T   +L++S+  K + L A  +  G   G+ I +  LI 
Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L  N+ I     ++       L+ VS+ GN      S     T+ GK  LK+
Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKL 679


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 348/561 (62%), Gaps = 29/561 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPV RRI++A+ ++G+      KKSAR+VGEV+GK HPH
Sbjct: 23  YLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKSARVVGEVLGKYHPH 82

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDSAAA RYTE RM ++   +L+ +D+
Sbjct: 83  GDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVRMARLTTELLRDIDK 142

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   ++E   EP V P++ PNLL NG SGIAVGM+T+IP HN+ E+ +  +ALIDN
Sbjct: 143 NTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHNLGEVIDGVVALIDN 202

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P++ ++ L++ I GPDFPTGGII+  ++ I ++Y+ GRG  +VR +  +EE   G   I+
Sbjct: 203 PDLEVKDLMKIIKGPDFPTGGIIM-GKDKIYQAYKTGRGRLKVRGKARIEEDKNGKSKII 261

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           +TEIPYQV K+RL+EKIA L+  ++I  + D+RDES    +RIV+  K  ++ P +++  
Sbjct: 262 ITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIVIELKKGTV-PKVILNR 320

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  + + M  L  G +P+V+ L  +L  +L H++EV+ RR+ +++   + R  
Sbjct: 321 LYKYTQLQVTYGVIMLALVDG-MPRVLTLKELLNHYLEHQKEVVTRRTKYQLDKAEARAH 379

Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  NID+I+ +IR   + D  +  ++  F+LTE Q +AIL +RL+ L  LE  
Sbjct: 380 ILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQAEAILRMRLQRLTGLERD 439

Query: 446 QIKSELDNLLAEKEKID---SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +I++E   L   KEKI    S+L    +    I  E+ E+KE F        RRT   E+
Sbjct: 440 KIEAEYKEL---KEKIAYYRSILADEGKLLGIIKDELLELKEKFQDE-----RRT---EI 488

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           S        + +I +E + + +++ G+I        RS +     +  ++ KE D ++  
Sbjct: 489 SIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHV 548

Query: 555 LHAHTTDRILLLSTDGKAYTL 575
               T    L  +  GK Y L
Sbjct: 549 FTTSTHHYFLFFTNKGKVYRL 569


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/633 (38%), Positives = 355/633 (56%), Gaps = 63/633 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G  +   ++KSAR V
Sbjct: 19  VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHESGFTYDKPYRKSARAV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 79  GEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+
Sbjct: 139 STFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIAVGMATNIPTHNPSEV 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  ++  GRG   +RA+  +E
Sbjct: 199 IDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFATGRGAVIIRAKADIE 257

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DIRDES      V+    R 
Sbjct: 258 EIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDESDRSGMRVVIEIKRD 317

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++A R EV+ RRS F 
Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGK-PRLMGLKDVLEAFIAFREEVILRRSRFE 376

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411
           +     R  IL GL+IA  NID +IA+IR                              D
Sbjct: 377 LNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQWNAADVEPLLALIHD 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  +    ++I+ LL      
Sbjct: 437 DGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV---AQRINELLEI---- 489

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQ--QAMIEKEPITVVISNRG 528
              I   +R + E+      + R       ++  AD A  Q  +++IE   + V I+  G
Sbjct: 490 ---IGSHVRRM-EVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVVTITREG 545

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TL 575
           +I        R+        +    +  D +  + +AHT   ++  S+ GK Y      L
Sbjct: 546 FIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQKVWRL 605

Query: 576 P-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           P AG    GR     + LL DL    D +TA +
Sbjct: 606 PEAGPAAKGRA---LVNLLPDL--GSDSITAVL 633


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 414/736 (56%), Gaps = 87/736 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDN E++IE L+ YI  PDFPTG  I    + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNSELTIEDLIHYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            +RA+  + E+   G   IVVTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R   P++++ +++  + ++  F +NM  LS  R P+++ L  IL++++ HR
Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           +EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P   K  M++R     
Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         ++LTE Q +AIL LRL  L  LE+ +I +E
Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNE 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L+   + +  +L+   +    +  E+ E+++ +        R++   E SR D    
Sbjct: 479 FKELIERIKYLIGILSDVNELIRVVKEELVEIRDNYGD-----ERKSEIIE-SRLD--LT 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D 
Sbjct: 531 REDLIAEENMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
           +L  S+ G     K Y  P  + +S    G  I  ++ L  ++ I TA +    ++    
Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           + + +  G    V+ SE       GK  + ++  +++         +VA+   N+++++F
Sbjct: 647 VFMATRLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698

Query: 674 SIDQIPEMSRGKGVRL 689
           S         GK +R 
Sbjct: 699 S-------DAGKAIRF 707


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG  I   ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++    +     +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I   I + K + ++ 
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516

Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537
            D  RR     E+   D+  L   +Q +I       V         + NRG I +L S+ 
Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 574

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595
                 H+K+ D LK     +T   +L++S+  K + L A  +  G   G+ I +  LI 
Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627

Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L  N+ I     ++       L+ VS+ GN      S     T+ GK  LK+
Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIGLKL 679


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 359/611 (58%), Gaps = 38/611 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KK
Sbjct: 7   DKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA RYTE 
Sbjct: 67  SARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L  +D++ VDF   Y+    EP V P+K PNLL NG++GIAVGMAT+IP H
Sbjct: 127 RMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P++++++L+  I GPDFPTG  I+  RE I+++Y  GRG  ++R+
Sbjct: 187 NLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKIL-GREGILKAYSTGRGSVKMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E + +G   IV+TEIPYQV K+R+IE IA+L   K I  +  +RDES      ++ 
Sbjct: 246 CAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                ++PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR+ V+ R
Sbjct: 306 ELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGH-PRVLTLREVLAYYLEHRKVVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +     R  IL+GLLIA  +IDE+I  IR    ++  K  ++S+F L+E Q  AI
Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSKFDLSEKQSIAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+ E   L    + + S+L    +    I  E+ E K+ ++    
Sbjct: 425 LDMRLRRLTGLERDKIQEEYAELEKTIDYLRSVLADEHKLMGIIRDELLETKKKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS---HSVD-----LSA 542
             +RRT       AD + L  + +I  E + + ++ RG+I+ + +   H+ +     +  
Sbjct: 482 --KRRTQI----EADTSELNVEDLIPNERMVLTLTRRGYIKRINANVYHTQNKGGRGIKG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HG 587
           +  K+ D++   L+    + +L  +  G     K+Y +P  N  + +G           G
Sbjct: 536 MATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPEANSRNSKGIAAINLLPLSQG 595

Query: 588 EAIQLLIDLNH 598
           E +  LID++ 
Sbjct: 596 EKVNALIDVDQ 606


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/607 (39%), Positives = 355/607 (58%), Gaps = 57/607 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G      + K
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I ++YR GRG   VRA
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGIEDAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S  + + IV+
Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ 
Sbjct: 305 EIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLKQIIEAFVMHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-----------DKP--------- 413
           RR+ F ++    R  IL+GL IA  NID +I +IRN            D+P         
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 414 ---------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                    +P        V   ++ L+E+Q  AIL LRL  L  LE  +I  E   LL 
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++  +LNS ++    I  E+ ++K  F        RRT   E++ A      + +I 
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTL 575
            G+ Y L
Sbjct: 595 CGRLYQL 601


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/740 (34%), Positives = 413/740 (55%), Gaps = 79/740 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 12  KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYTE
Sbjct: 72  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM ++AE +++ +D   VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 132 ARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++++  +S+  L+  + GPDFPT   I+ + ES+V++Y  G+G   +R
Sbjct: 192 HNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYN-ESLVKAYTTGKGSVVIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           +R+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  E +RIV
Sbjct: 251 SRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIRIV 310

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L  K +  DP ++M  ++  +++   F +N N+  +  +P+ + L  ++ E++ HR+E++
Sbjct: 311 LEIK-KGFDPHVVMNLLYEYTELRKNFSIN-NLALVNGIPKQLNLKELISEFIDHRKEIV 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR  F ++    +  IL+GL I+  +ID +I IIR        K  ++  F+L+E Q +
Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKEFNLSEIQAN 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL+++L+ L  LE  +++ E   +L   +  + +L S ++  N     +RE  EI + S
Sbjct: 429 SILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYEDILVSPERVVNI----VRE--EIINLS 482

Query: 490 TDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL----- 543
              G  RRT         K ++   M ++E + V+++ +G+I+ +      L  +     
Sbjct: 483 LKFGDERRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRILQDEYKLQGIGGKGL 541

Query: 544 ---HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                ++ D + IAL  +T D +L++S +GK Y + A  +   S    G+ I+ LI+L  
Sbjct: 542 GSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSKGQNIRELINLGE 601

Query: 599 NQDIV---------------------------------------------------TAFV 607
            ++I+                                                   +A +
Sbjct: 602 TEEILAIKNCNELSLDNYLLITTANGKIARIETEGFKTVKSRGVIVIKLDDKDFVTSAEI 661

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKM-KLVVKVTGDHVAVV 664
                K++ +S KGNAF    ++I    R  +G + +KV   + + K +    G H+ +V
Sbjct: 662 VSKNDKIICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDMLIKALSAKQGSHLLIV 721

Query: 665 GENRKLLIFSIDQIPEMSRG 684
            EN       I ++ E+ RG
Sbjct: 722 SENGYGKRLEISRVTELKRG 741


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPEVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +        RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/465 (44%), Positives = 317/465 (68%), Gaps = 8/465 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERR 461


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/643 (38%), Positives = 374/643 (58%), Gaps = 65/643 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSA
Sbjct: 8   VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALID+  ++ + L+EYI GPDFPT GII   R  IV++YR GRG   +RAR 
Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGII-NGRAGIVQAYRTGRGRVYMRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E   + G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++   V+  
Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  + ME+ F +N   L  G+ P+++ L  +L  ++ HRREV+ RR
Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MVS 419
           + F ++    +  +L+GL +A  NID +I +I+                 KP  V  M+ 
Sbjct: 366 TVFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLE 425

Query: 420 R----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           R                      + L+  Q  AIL+LRL+ L  LE  ++ ++   LL +
Sbjct: 426 RAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQ 485

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E++ V+E ++       RR+     SR D +   + +I +
Sbjct: 486 IAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV-ASRQDFS--MEDLIAE 537

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+         R+ K      SA   K+ D ++  L A T D +LL +  
Sbjct: 538 ETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDA 597

Query: 570 GK-----AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GK      + LP G   S    G+ I  L+    N++ +TA +
Sbjct: 598 GKVFWLRTFELPQGGRAS---RGKPIVNLLPALGNEERITAIL 637


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 372/626 (59%), Gaps = 39/626 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ ++  +  E ++ V +   +E+ Y+ YA+S I  RA+PD RDG KPV RRI++AM EM
Sbjct: 4   DVPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMEEM 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+   +  +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG++DGD
Sbjct: 64  GVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSVDGD 123

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEARM  +AE +L  +D+D VDF   Y++  +EPVV P++ PNLL NG SGIA
Sbjct: 124 PPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGASGIA 183

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE------YIIGPDFPTGGIIVESRES 238
           VGM+T+IP HN+ E+ +AA+ LIDNP+ ++  L++      YI GPDFPTG  IV +RE 
Sbjct: 184 VGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIV-NREG 242

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  RVRA   +E   RG   IVVTE+PYQ  K+R IE+IAE +   +I  +
Sbjct: 243 IWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIEGI 302

Query: 299 EDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQV 354
            DIRDES  D VR+V+  K R  + D++   +     +E       +++S+  V   P+V
Sbjct: 303 RDIRDESDRDGVRVVIECK-RGSNADVVKNQL-----LEHHLENTFSIISLALVDDQPRV 356

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + L  +L+ ++ HRREV+ RRS F +Q    R  IL+G L+A  N+D+++  I+N D   
Sbjct: 357 LNLKELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRD 416

Query: 415 PVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             M +    + L+E+Q + I+ ++L SL  +E  +I++E +++ AE E+++++LN   + 
Sbjct: 417 AAMAALRKAYDLSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLETILNDESEL 476

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+R++K  ++       R+T   E +    +  ++ +I +E + VV++   +++
Sbjct: 477 LGVIKDELRDIKAEYADE-----RQTDVIEDA---GSVTREDLIAEEEVVVVVTEEDYVK 528

Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581
            +     D        +     KEGD +     A T D +L  +  G+ Y L    L  +
Sbjct: 529 RMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEM 588

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFV 607
                G +   ++DLN  ++I TA V
Sbjct: 589 GRTARGTSAVNVLDLNDGEEI-TAVV 613


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 379/630 (60%), Gaps = 36/630 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+E+G+ 
Sbjct: 6   NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++DGD AA
Sbjct: 66  PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  GIAVGM
Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +Y  GR
Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IRDES +
Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R  + ++++ +++  + ++T F  NM  ++ G+ P+ M L  IL  +L H
Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           +RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++R+ L+
Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  +I++E  +LL   E    +L +  ++ +QI  +  E+ +
Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539
           I +K  D  R      +VS    +   + +I++E + + ++++G+I+ L +   H+ +  
Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581
              +  ++  + D ++  +   T D +L  S  GK Y +               P  NLL
Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            G   GE +Q +I++  +      F++ +T
Sbjct: 597 -GLDAGERVQAVINVRGDAATSKDFLFFTT 625


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++T F +NM  L  G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKILGLKEILSAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  +V+R           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ASAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L++  +    I  E+  +++ ++       RRT   E++        + +I +
Sbjct: 485 IAELLFILSNPDRLMEVIREELEAIRDQYNDP-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL+ S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           G+ Y +    L  + RG  G  I  L+ L  N+ I 
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/605 (40%), Positives = 357/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + M+  F +NM  L  G+ P+++ L   L+ ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA  NID II +IR+   P   K  +VS            
Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
              +  +L S ++    I  E+  ++E F  +     RRT       A+ A +  + +IE
Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRMY 600


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/613 (38%), Positives = 369/613 (60%), Gaps = 40/613 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGM T+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  E VR
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  K R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++E
Sbjct: 300 FVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q
Sbjct: 358 VVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F 
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538
                 +RRT   E+   +  +L+ + +IE+  + + +SN+G+I+ L        K    
Sbjct: 478 D-----QRRT---ELMVGEVWSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +     K+ D ++  +   T D +L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK- 588

Query: 584 RGHGEAIQLLIDL 596
              GE+IQ +I++
Sbjct: 589 LDEGESIQTIINV 601


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/605 (40%), Positives = 355/605 (58%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  II   R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++   +L  +++  + M+  F +NM  L  G+ P+++ L   L+ ++ HRREV+ R
Sbjct: 307 VKRDAVGRGVL-NNLYTQTQMQVSFGINMVALHQGQ-PKLLDLKECLEAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL IA +NID II +IR    P   K  +VS+           
Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516
              +  +L S ++    I  E+  ++E F  +     RRT       A+ A +  + +IE
Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++        + +      SA   KE D +   L A+T D IL   +
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFS 595

Query: 569 DGKAY 573
            G+ Y
Sbjct: 596 RGRMY 600


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/708 (35%), Positives = 399/708 (56%), Gaps = 47/708 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+ +  A KK
Sbjct: 7   ENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNRAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQP+  RYPL+ GQGNFG++DGD+ AA RYTEA
Sbjct: 67  SARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A+ +L  +++D VDF+  +++  SEP V P+KFPNLL NG+SGIAVGMAT++  H
Sbjct: 127 RLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I +L+E++  PDFPTGGII      +  +   GRG   +R+
Sbjct: 187 NLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIY-GYNGVRSAMETGRGSIIMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E    G   I+VTEIPY + K+ +IE+IA LI  K++  + DIRDES  +   ++F
Sbjct: 246 KAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMRIVF 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  +F  + ++T F +N   L  GR P ++ L  ++K ++ HR  V+ R
Sbjct: 306 DLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGR-PVLLNLKDLIKHYVDHRIVVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ + ++  ++R  IL+GLLIA  N+D +IA+IR    P   K  ++ +F L+E Q  AI
Sbjct: 365 RTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQFELSEIQARAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E + ++     +  +L +  +++  I  E+ ++KE +     
Sbjct: 425 LDMRLQRLTGLEREKIVKEYEEIMILIADLKDILANEYRKYEIIKTELTDIKERY----- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R T  E S  + +   + MI  E + + IS  G+I        R+     V    +
Sbjct: 480 -GDARRTQIEFSAEEFS--DEDMIADEEMLITISKEGYIKRTPLSEYRTQTRGGVGSRGV 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
             K+ D  +    A   + +L+ +  G     K Y +P G+  S    G  IQ LI L  
Sbjct: 537 KTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEGSKTS---KGRPIQNLISLES 593

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK 655
                     DS   ++ V +  +   +  + +I  T +G   KT L+  S  +   ++ 
Sbjct: 594 G---------DSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSRPRTNGIIA 644

Query: 656 VT---GD---HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           ++   GD   +VA+   +  ++I S          KGVR       G+
Sbjct: 645 ISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPMGRTAAGV 692


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L +  +    I  E+  +KE ++   DL  RRT   E++        + +I +
Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/635 (39%), Positives = 370/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID II +IR                          
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++       RRT   E++        + +I +
Sbjct: 485 IGELIFILENPERLMEVIREELMAIKEQYNDP-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 405/711 (56%), Gaps = 47/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  R  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVM-GRSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q  
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFA-- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
            D  R      EV     +   + +IE+E + + +S++G+I        RS K     + 
Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+  
Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V   TG+   ++G      + F  D I  MSR   GV+  + +DG
Sbjct: 645 GDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/635 (39%), Positives = 373/635 (58%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++ +ISIE L+E+I GPDFPT  II   R  I+++YR GRG   +RAR 
Sbjct: 188 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR    P   K  +++R           
Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELLKQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E++  +L S ++    I  E+  +++ ++       RRT   E + AD     + +I +
Sbjct: 485 IEELLFILRSPERLMEVIREELEAIRDAYNDP-----RRTEITE-NTADINI--EDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  ++ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERI 631


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/606 (40%), Positives = 353/606 (58%), Gaps = 57/606 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMA +IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N  ++I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            VE   + S    I+V E+PYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 247 EVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L   + P+VM L  IL  +L HRREV+ R
Sbjct: 307 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+GL +A  NID II +IR+ D P   K  +V+R           
Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I  E  +LL  
Sbjct: 426 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 485

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+E +      G  R    E+S +      + +I  
Sbjct: 486 IAELLFILASPERLMEVIRDELLAVREQY------GDERPP--EISASSAEINIEDLITP 537

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE + ++  L A+T D IL  ST 
Sbjct: 538 EDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTR 597

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 598 GKVYWL 603


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/606 (40%), Positives = 354/606 (58%), Gaps = 57/606 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALI+NP+++I +L+EYI GPDFPT GII   R+ I+++Y  GRG   +RA+
Sbjct: 187 LNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGII-NGRKGIIDAYHTGRGRAVMRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 AEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M++ F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L IA  NID IIA+I+    P    V                
Sbjct: 364 RTVFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSML 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL  L  LE  +I  E + LL  
Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S  +    I  E++EV E F      G  R T    +  D +   + +I +
Sbjct: 484 IAALLYILRSSVRLMEVITEELQEVLENF------GDERRTVINANEVDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +  +L  +          +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 596 GKMYWL 601


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 379/630 (60%), Gaps = 36/630 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+E+G+ 
Sbjct: 6   NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++DGD AA
Sbjct: 66  PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  GIAVGM
Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +Y  GR
Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IRDES +
Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R  + ++++ +++  + ++T F  NM  ++ G+ P+ M L  IL  +L H
Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           +RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++R+ L+
Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  +I++E  +LL   E    +L +  ++ +QI  +  E+ +
Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539
           I +K  D  R      +VS    +   + +I++E + + ++++G+I+ L +   H+ +  
Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581
              +  ++  + D ++  +   T D +L  S  GK Y +               P  NLL
Sbjct: 537 GRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            G   GE +Q +I++  +      F++ +T
Sbjct: 597 -GLDAGERVQAVINVRGDAATSKDFLFFTT 625


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPEVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +        RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 363/611 (59%), Gaps = 51/611 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR V
Sbjct: 26  VSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +R++  VE
Sbjct: 206 IDATLALIEDPDLTSEQLIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRSKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IVV E+PYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420
            ++    R  IL GL +A  NIDEI+A IR      +  + +M  R              
Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S +
Sbjct: 443 DPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+REV++ F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RIMGIICDELREVRDQFAVP-----RRTEIVDWS---GDMDDEDLIEREDMVVTVTSGGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ K     +S +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 581 -LSGRGHGEAI 590
             S  G G+AI
Sbjct: 615 QSSRTGKGKAI 625


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 365/636 (57%), Gaps = 59/636 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NPE++ E+L+  I GPDFPT G I   RE I+ +Y  GRG  +
Sbjct: 182 PPHNLAEVIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIY-GREGILSAYSTGRGIIQ 240

Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 241 MRARAIVETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    +  +P +++  ++  + M++ F + M  +   R P+V+ L   +  ++ HRRE
Sbjct: 301 RVVVELKKDENPQIVLNHLYKQTQMQSSFGIIMLAIVNNR-PKVLTLRETINHFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------- 413
           ++ RR+ F ++  + R  IL+GL IA   +D +I +IR    P                 
Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEW 419

Query: 414 ----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                           KPVM     L+E Q  AIL +RL  L  +E  +I  E   +L  
Sbjct: 420 LKKLGLSLPANHAEYAKPVM-----LSELQAQAILEMRLHRLTGMERDKIIDEYHEILRY 474

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+ E+KE F       +RRT    + +  + +L+  ++E 
Sbjct: 475 IARLKEILASETEILKIIVGELLELKEKFGD-----KRRTEI--IDQTAEISLEDTIVE- 526

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V IS+ G+I        R+ +      + +  KE D ++    A + D ++  +  
Sbjct: 527 EDMVVTISHTGYIKRNAVTMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDA 586

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603
           GK Y L    +  +GR   G+AI  L++L+ N+ I 
Sbjct: 587 GKVYWLKVYEIPEAGRATRGKAIVNLLNLSANEKIT 622


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              ++I+
Sbjct: 593 QAEEEIM 599


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 361/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSTVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419
           F ++    R  IL+G  +A  NID +IA+I+    P   K  ++S               
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERA 428

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                              ++ L+  Q  AIL LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +        RRT   + +R D  TL   MI +E  
Sbjct: 489 LIRILNSATRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D +   L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPEVTIDELMQHIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +        RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/618 (38%), Positives = 356/618 (57%), Gaps = 36/618 (5%)

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
             EP   PS+ P +L NG SGIAVG+AT IPSHN++E+  AA+ALI NP++S  +L+  I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W +VVTE+P      +
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 282 LIEKIAELIIAK------------------RIPLLEDIRDESAED--VRIVLFPKNRSLD 321
           ++E+I EL   K                   + LL+ +RDES ++  VR+V  PK+R++D
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
               + S+   + +E+   LN+ ++     P    L  IL EW+  R++ + RR   R+ 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
             D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F LTE Q D IL +RLR L +
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLTERQADDILEIRLRQLAR 360

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE+ +I+ EL+ L  EK K++ LL       N  A +   +KEI + +   G  R T  +
Sbjct: 361 LEKIKIEKELEALRDEKAKLEDLLA------NDNAMKRLMIKEIEADAKQYGDDRRTLIQ 414

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             +  +AT  +A +  EP+TVV+S +GW+R+LK H +D ++  FK GDSL  A    T D
Sbjct: 415 QEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPASFSFKAGDSLYAAFQCRTPD 471

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           R++   + G+ Y++    L  GRG G  +  LI+L     ++  +   +   LL+ SS G
Sbjct: 472 RLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQPLLLASSNG 531

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
             FI +  ++++  + GK F+ + +       M ++   T   VA +    +LL+F ID+
Sbjct: 532 FGFIAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNAT--QVACLSSGGRLLVFGIDE 589

Query: 678 IPEMS-RGKGVRLQSYKD 694
           +  +S  G+GV L +  D
Sbjct: 590 MKTLSGGGRGVTLMALDD 607


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 344/555 (61%), Gaps = 21/555 (3%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++AM E+G+      KKSAR+VGEV+GK HPH
Sbjct: 21  FLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKSARLVGEVLGKYHPH 80

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VRLAQ F  RYPL+ G GNFG++DGD AAA RYTEARM+++A  +L  + +
Sbjct: 81  GDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEARMSKIATEMLSEIHK 140

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + +DFR  +++   EP V P++FPNLL NG++GIAVGMAT+IP HN++E+ +A + +IDN
Sbjct: 141 ETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPHNLREVVDALVHMIDN 200

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE    +++++I GPDFPTGG+I+  RE I  +YR GRG  ++RA+  +E +  G   IV
Sbjct: 201 PECEDTEIMQHITGPDFPTGGLIL-GREGIRSAYRTGRGIIKIRAKTQIERMENGKSRIV 259

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K++ IEKIA+L+  K++  + D+RDES      ++    R  +  +L+  +
Sbjct: 260 VTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIVIELKRETNAQVLLNQM 319

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           F  + ++  F + M  L   + PQV+ L  +L  +L H+++V+ RR+ F ++  + R  I
Sbjct: 320 FKFTQLQQTFGIIMLALVNNK-PQVLNLREMLGHYLEHQKDVITRRTRFDLRKAEERAHI 378

Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL IA  N+D +I +IR   N ++ +  ++  F LT+ Q  AIL++RL+ L  LE  +
Sbjct: 379 LEGLRIALKNLDAVIKLIRASKNTEEARTGLMENFGLTQIQAQAILDMRLQKLTGLERQK 438

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           ++ E   L+ +   +  +L + +  +  I  E+ E+++ +      G  R T   +   D
Sbjct: 439 LEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRKKY------GDDRRTAIVIDEDD 492

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAH 558
            A   + +I +E + V +++ G+I+ L        K     ++ +  K  D ++    A 
Sbjct: 493 FAV--EDLIAEEDMVVTLTHNGYIKRLPVTTYRVQKRGGRGITGMSTKGDDFVEHVFVAS 550

Query: 559 TTDRILLLSTDGKAY 573
           T D +   +  GK Y
Sbjct: 551 THDYLCCFTNRGKMY 565


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 385/662 (58%), Gaps = 61/662 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  + N+  V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM  +G D+  
Sbjct: 9   THFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEVLGNDYNK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DGDSAAA R
Sbjct: 69  SYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSAAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L+ ++++ VDF D Y+  +SEP+V P++ PNLLANG+SGIAVGMAT+
Sbjct: 129 YTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSSGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA L  IDN +I+I++LLE + GPDFPT GII      I ++Y  G+G  
Sbjct: 189 IPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGII-NGASGIRQAYETGKGKI 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+   +E  G     IVVTE+PYQV K++LI KIA+L+  KRI  +  +RDES +D  
Sbjct: 248 YLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLRDESDKDGM 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++ L++M+T F +NM  +  G +P++M L  IL+ ++AHRR+
Sbjct: 308 RMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKG-MPKLMTLKNILEAFIAHRRD 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------- 420
           V+ RRS F +        +L+GL +A  NID+II +I+   N    K V+V++       
Sbjct: 367 VVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAKTWQGSVI 426

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ QV AIL+L+L  L  LE+ +I  E +
Sbjct: 427 KELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKNKIFDEFN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL   E+I  LL+   Q   ++   IRE  E+    ++    R T     + D  TL+ 
Sbjct: 487 ELL---ERIKYLLDI-LQTPERLMQVIRE--ELIDIQSNYANARMTQILEHKID-LTLED 539

Query: 513 AMIEKEPITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRIL 564
            +I +E   V +S+ G+++  SL  +           A   K+ D +     A++ D +L
Sbjct: 540 -LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVL 598

Query: 565 LLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSS 619
             S+ GK Y L    L ++ R   G+ I  L+ L   +    I+T   +D    + +V+S
Sbjct: 599 CFSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDENHFVFMVTS 658

Query: 620 KG 621
            G
Sbjct: 659 SG 660


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/606 (40%), Positives = 354/606 (58%), Gaps = 58/606 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALI++P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +RAR
Sbjct: 187 LNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 305 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L +A  NID IIA+I+    P    V                
Sbjct: 363 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGML 422

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I +E + LL  
Sbjct: 423 EKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEI 482

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+ EV       T+ G  R T    +  D +   + +I +
Sbjct: 483 IAALLFILGSPERLMEVIKEELEEV------LTNFGDERRTVINANEVDMSL--EDLINE 534

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 535 EDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 594

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 595 GKMYWL 600


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/635 (38%), Positives = 364/635 (57%), Gaps = 60/635 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L + YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +G D+  A+KKSAR+V
Sbjct: 11  INIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEIRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +D+D V+F   Y+E +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNISEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LA ID+  IS+E L++++ GPDFPT GII  S+  I ++Y  GRG   +RA+  +E
Sbjct: 191 IAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSK-GIEQAYGTGRGRIYIRAKANIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDES ++   +L    R
Sbjct: 250 VDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRILIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++ L+ ++  F +NM  L  G+ P+VM L  IL+ ++ HRREV+ RR+ F
Sbjct: 310 DAIAEVILNQLYSLTQLQVSFGINMVALDHGQ-PKVMTLKDILRAFIRHRREVVTRRTLF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------- 416
            ++    R  IL+ L +A  NID II +IRN   P                         
Sbjct: 369 ELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSMLDCVG 428

Query: 417 ----------MVSRFSL-------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                     + +RF +       TE Q  AIL+LRL+ L  LE   + +E   LL    
Sbjct: 429 DEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKELLNAIH 488

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L+   +    I  E   +K  +         R T  +++ AD     + +I +E 
Sbjct: 489 ELQKILSDPDRLLEVIREEFLSIKAQYHDP------RRTEIKINTADIHL--EDLIPQED 540

Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S++G+I+   L  +          SA   K+ D ++  L A+T D IL  S+ G+
Sbjct: 541 VVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGR 600

Query: 572 AYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604
            Y L    L  + RG  G  I  L+ LN ++ I  
Sbjct: 601 LYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITA 635


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 384/660 (58%), Gaps = 67/660 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D +RIV+
Sbjct: 245 KAEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ M+  F +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420
           RR+ F ++    R  IL+GL IA  N+D II +IR    P+     +++R          
Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + LTE Q  AIL+LRL+ L  L   +I  E   LL 
Sbjct: 423 LAAAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLE 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I 
Sbjct: 483 AIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
            G+ Y L    L  + RG  G  I  ++ L  N+ I     VTA+  D   K +++++ G
Sbjct: 595 RGRLYWLKVYQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEED---KFVIMATAG 651


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  ++++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/684 (36%), Positives = 382/684 (55%), Gaps = 67/684 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + K
Sbjct: 13  DDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASYESGYHWNRKYVK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTEA
Sbjct: 73  SARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSIDGDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA  +L+ +D+D VDF+DTY+   SEP + P++FPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALIDNP + + +LLE I GPDFPTGGII+  R  I  +Y  GRG   +R 
Sbjct: 193 NLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIIL-GRSGIHSAYATGRGSVVMRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      I++TE+PYQV K+++IEK+AEL+  KRI  + DIRDES      V+ 
Sbjct: 252 KTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIRDESDRQGYRVVI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++  ++  + ++T F  NM  L+ G+ P+VM L  +L+ ++A R EV+ R
Sbjct: 312 ELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLLDMLRAFVAFREEVVTR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR---------- 420
           R+ + ++ +  R  +L GL IA  NIDE+I +IR    P+     +M  R          
Sbjct: 371 RTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMERRWPAQDVESLI 430

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          ++L+E Q  AIL+LRL+ L  L   +I  EL+ + AE +    +L
Sbjct: 431 LLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIQDYLDIL 490

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S  +    +  E+  V++ F        RRT   E++        + +I +E + V ++
Sbjct: 491 SSRARVQGIVKDELIAVRDEFGTP-----RRT---EITEGGADMEDEDLIPREDMVVTVT 542

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572
           ++G+I        R+        S +  K+ D +     A+T   IL  S+ G     K 
Sbjct: 543 HKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYKEKV 602

Query: 573 YTLPAGNLLS-GRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + LP G   S G+          GE I  ++ L  +++   A        ++  +++G  
Sbjct: 603 WRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAAL------DVMFATTRGTV 656

Query: 624 FIVEESEIIANTRKGKTFLKVSSE 647
              + S+     R GK  +K+  E
Sbjct: 657 RRNKLSDFTQVNRNGKIAMKLDEE 680


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 260/767 (33%), Positives = 434/767 (56%), Gaps = 53/767 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++ M EMGL       KS
Sbjct: 10  NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+V+GK HPHGD ++YDSLVR+AQPF  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 70  AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +D++ VDF+  Y++ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  A + LI +P  ++ K++E++ GPDFPTGG I+  R+ I++++  GRG  ++RA+
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFIL-GRQGILDAFIRGRGQLKLRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++G+    I+VTEIPYQV KSRLIE  + L+  K++  + DIRDES  D   ++F 
Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F + M  +  G+ P+ + L  ++K ++ HR EV+ RR
Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQ-PRELGLVDMIKHFIDHRIEVVRRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + + ++    R  IL G   A  ++DE+I +IR    PK     +++ F  ++ Q  AI+
Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L+ L  +E  +I  EL  +     +   +L S K   + I  E++EV++ +      
Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDE--- 484

Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG--- 548
             RRT   E    D   ++ + ++  E + + ++  G+   LK  SVD      + G   
Sbjct: 485 --RRTQIIE----DTGEIRLEDLVAVEDVAITVTRGGY---LKRTSVDTYRRQTRGGKGR 535

Query: 549 --------DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595
                   D ++  + A T   +L+ +T G     KAY +P    +   G G+ +  LI+
Sbjct: 536 IGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTI---GKGKHLTNLIN 592

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKM 650
           L  +++   AF+    + +   +++V+  G   ++++SE+   +    +  + VS +E  
Sbjct: 593 LQGDEE-AKAFLSVKDFVANQYIVMVTKHG---VIKKSELTEFDNPLSRGIIAVSLDEGD 648

Query: 651 KLV-VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +L+  K+T GD+   +G +    I F  + +  M R  +GVR  S  DG    ++  ++ 
Sbjct: 649 ELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAMGRQARGVRAMSLADGDY--LVGMEVV 706

Query: 707 EGLTWIDSAGRSYNRSENDLLGW-LGKRGGVGSLVPKGFPRSGKFLS 752
           E    I S   +       L  + L  RGG G +  K   ++G+ + 
Sbjct: 707 EKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTTNKTGRVVG 753


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/600 (38%), Positives = 355/600 (59%), Gaps = 47/600 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS+ G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG++DGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+  V+  +L  +DE+ VDFR  Y+  +SEPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A +  IDN E+++++LL+ + GPDFPTGG I+  R  I  ++  GRG   +
Sbjct: 181 PHNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTIL-GRSGIRSAFATGRGSIVI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  ++I  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++   D ++  I  L+ + + F +N  VL+  R P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNR-PVLMSLKEIIVAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ FR++    +  I  GL IA L+IDE+I I+R    P+                  
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEIN 418

Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               ++S          + LTE Q  AIL+++L+ L  LE  ++++EL++++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L S ++   +I   ++EV+  F+        R T  E S AD     + +I +E + V 
Sbjct: 479 FLGSEEKLMKEIKNNLQEVRNRFAVP------RKTVIEESDADIEV--EDLIPQEDMVVT 530

Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K SH                KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRL 590


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 383/682 (56%), Gaps = 29/682 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+       KSAR VG+VIGK
Sbjct: 53  MRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNESGILPNRPHAKSARTVGDVIGK 112

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF    PL+ G GNFG+IDGDSAAA RYTEAR+ + A  +L+
Sbjct: 113 YHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDGDSAAAMRYTEARLARPAMELLR 172

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VD++  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +A   
Sbjct: 173 DLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGIAVGMATNIPPHNLAEVIDATCL 232

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP++S+++LL+ + GPDFPTG  I+  RE I E+Y  GRG   +RA+  + +  RG 
Sbjct: 233 VIDNPDVSLDELLKVMPGPDFPTGATIM-GREGIREAYETGRGSMTLRAKCEISQTKRGR 291

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I V EIPY V +++L+EKI ELI  K++P + ++ D +    + I++  K  ++ P +
Sbjct: 292 SIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDGADRHGIDIIIELKQNAI-PQV 350

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + M+T F  NM  L +  VP  + L  IL  ++AH+ +V+ RR+ + +Q  +
Sbjct: 351 VLNKLYKHTQMQTTFGANMLAL-VDDVPHTLSLKQILSYYIAHQIDVITRRTRYDLQKAE 409

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441
            R  I++GLLIA  NIDE+I IIR+    K     ++  F+L E Q +AIL +RLR L  
Sbjct: 410 ERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIENFNLDEIQANAILEMRLRRLTG 469

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  EL +L         +L         I  E+ E+K+ FS      +RRT    
Sbjct: 470 LEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFS-----SKRRTQIQR 524

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKI 553
            S  D     + +I  E + V ++  G+++ L        K     +  ++ KE D ++ 
Sbjct: 525 ASAKDIDV--EDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEH 582

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDST 611
              A T   +L  S+ GK Y L    L     H  G AI  L+ L   + I         
Sbjct: 583 LFVASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDF 642

Query: 612 CK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            K   L+  +S G       S      R G   + ++  +++  V +V+ G+ V +V   
Sbjct: 643 PKEEYLMFATSAGMVKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSA 702

Query: 668 RKLLIFSIDQIPEMSRG-KGVR 688
            K +++   +   M R  KGVR
Sbjct: 703 GKAIVWDESEARAMGRDTKGVR 724


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/632 (38%), Positives = 371/632 (58%), Gaps = 38/632 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+     
Sbjct: 6   LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 66  YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG +GIAVGM T+I
Sbjct: 126 TEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGGI++  +  I ++Y+ GRG   
Sbjct: 186 PPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIRKAYQTGRGNII 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + DI DES  E +R
Sbjct: 245 VRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMR 304

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  + R     +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL  +L H+ +
Sbjct: 305 IVIDVR-RDASASVILNNLYKMTLMQTNFGFNMLAIVKG-APKVLSLKQILIYYLEHQED 362

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  ++  + L++ Q
Sbjct: 363 VIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYGLSDKQ 422

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I+SE  +LL        +L S K + NQI  E  E+ EI  
Sbjct: 423 AQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILAS-KDRINQIIYE--ELMEIQR 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
           K  D  R      EV     +   + +IE+E + V +++ G+I+ L +            
Sbjct: 480 KFGDKRRTELMVGEVL----SIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQHRGGRG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGR 584
           +  +   + D ++  L   T D +L  +  GK Y +               P  NLL G 
Sbjct: 536 IQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVINLL-GV 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             GE IQ ++++  +      +++ +T K +V
Sbjct: 595 NSGEKIQAVVNVTGDASASDNYLFFTTVKGVV 626


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/621 (39%), Positives = 365/621 (58%), Gaps = 64/621 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 11  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 71  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 131 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  ISIE L+++I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 191 SEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 249

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D +RIV+ 
Sbjct: 250 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  ++ HRREV+ R
Sbjct: 310 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDIISAFVCHRREVVTR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 368 RTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNVASML 427

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 428 ERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTL 487

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +K  ++ +     RRT   E + AD     + +I +
Sbjct: 488 IGELLFILESPERLMEVIREELLAIKAQYNDA-----RRTELTE-NTADINI--EDLINQ 539

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 540 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSR 599

Query: 570 G-----KAYTLPAGNLLSGRG 585
           G     K Y LP  +  S RG
Sbjct: 600 GRLYWMKVYQLPEAS-RSARG 619


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 265/754 (35%), Positives = 410/754 (54%), Gaps = 91/754 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARIV
Sbjct: 11  VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D+D VDF   Y+  ++EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + ++DNP ISI++LL +I GPDFPT GII      I E YR GRG   +RAR   E
Sbjct: 191 INACVEILDNPNISIDELLNFIPGPDFPTAGII-HGNSGIKEGYRTGRGRVVMRARTHFE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  +G    I++ E+PYQV K  L+EKIAEL+  K++  + D+RDES +    V+    R
Sbjct: 250 ETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ F
Sbjct: 310 GEIPDVVLNNLYKQTQLQDSFGINMVALIDGQ-PKLLNLKQVLDAFLNHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------- 416
            ++    R  IL+GL +A  N+DE+I II++   P PV                      
Sbjct: 369 ELRKARERGHILEGLAVALENVDEMIKIIKS--SPSPVEAKTELMQREWKSSVVSSMLKQ 426

Query: 417 ----------MVSRFSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                     ++S + L EN       Q   IL +RL+ L  LE+ +I +E   ++    
Sbjct: 427 GDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIA 486

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +LN   +  + I  E+ E+KE +        RR+   E   A+  +++  +I  + 
Sbjct: 487 DLIDILNKPDRVTSIIKTELEEIKETYGDD-----RRSEIVE--NAEDLSIED-LIAPQD 538

Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+I        R+ K       A   K+ D +     A++ D IL  S+ G 
Sbjct: 539 MVVTLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQ 598

Query: 571 ----KAYTLPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               K Y +P G+ +S RG           GE I  ++ +    D    +++ +T K  V
Sbjct: 599 VYWLKVYEVPQGSRVS-RGKPIVNLFPLMPGEKINAILTVKEFVD--NEYIFMATAKGTV 655

Query: 617 VSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
             +  + F        +N RK G   +K+ + + +       G++ + +V  + K + F 
Sbjct: 656 KKTPLSDF--------SNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFG 707

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              +  M R  +GVR     DGG  +V+   I E
Sbjct: 708 ESDVRSMGRNARGVRGMKLTDGG--EVLSLLIAE 739


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/632 (38%), Positives = 371/632 (58%), Gaps = 38/632 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+     
Sbjct: 6   LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 66  YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG +GIAVGM T+I
Sbjct: 126 TEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGGI++  +  I ++Y+ GRG   
Sbjct: 186 PPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIRKAYQTGRGNII 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + DI DES  E +R
Sbjct: 245 VRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMR 304

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  + R     +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL  +L H+ +
Sbjct: 305 IVIDVR-RDASASVILNNLYKMTLMQTNFGFNMLAIVKG-APKVLSLKQILIYYLEHQED 362

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  ++  + L++ Q
Sbjct: 363 VIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYGLSDKQ 422

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I+SE  +LL        +L S K + NQI  E  E+ EI  
Sbjct: 423 AQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILAS-KDRINQIIYE--ELMEIQR 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
           K  D  R      EV     +   + +IE+E + V +++ G+I+ L +            
Sbjct: 480 KFGDKRRTELMVGEVL----SIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQHRGGRG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGR 584
           +  +   + D ++  L   T D +L  +  GK Y +               P  NLL G 
Sbjct: 536 IQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVINLL-GV 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             GE IQ ++++  +      +++ +T K +V
Sbjct: 595 NSGEKIQAVVNVTGDASASDNYLFFTTVKGVV 626


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/619 (39%), Positives = 366/619 (59%), Gaps = 28/619 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +R  +E+ +L Y++S I  RA+PD+RDG KPVHRRI++AM E  L    A++KSA  V
Sbjct: 11  VEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAYRKSATTV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG+IDGD  AAYRYTEARM+++
Sbjct: 71  GNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYTEARMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +LQ ++++ VDF+  +++   EP+V PS+FPN+L NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +    LIDNP+ ++E+L  +I GPDFPTGGII+  R  I E+Y  GR    +RA+  +E
Sbjct: 191 IDGMALLIDNPDATLEELTAHIQGPDFPTGGIIM-GRAGIREAYVKGRSRITLRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   I+VTEIPY V K+R++E IAEL   KRI  + D+RDES  E +RIV+  K R
Sbjct: 250 EDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIVVELK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  S ++   P+ M  L  G  P+V+PL  IL E++  + +V+ RR+ +
Sbjct: 309 DANPQVVLNRLYTYSQLQETVPVIMLALVNGH-PRVLPLRDILTEYIHFQEQVVTRRTQY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA   IDE+I I+R      + K  ++ RF L + Q  AI+ +R
Sbjct: 368 DLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMERFELDDIQAQAIVQMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ EL  L  +     ++L   ++    +  E  EVK  F        R
Sbjct: 428 LGQLTNLEREKIEEELAALETKIANFKAILADEQRILQIVKEEALEVKAKFGDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSV-----DLSALHFKE 547
           RT    VS        + +I  E + + ++N G+I+ L +   HS       ++ L  +E
Sbjct: 483 RTRIENVSGEVDV---EDLIPVEDVVLTLTNFGYIKRLPAAAYHSQRRGGRGVNGLTRRE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAF 606
            D  +      T D +L  ++ G+ Y L    +  G    + + +   L   QD  +TA 
Sbjct: 540 EDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTSKGMNVANILPVAQDENITAM 599

Query: 607 V----YDSTCKLLVVSSKG 621
           +    ++  C L++V+ KG
Sbjct: 600 IKVPKFEEDCYLVMVTKKG 618


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/633 (38%), Positives = 356/633 (56%), Gaps = 63/633 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G  +   ++KSAR V
Sbjct: 19  VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHESGFTYDKPYRKSARAV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 79  GEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+
Sbjct: 139 STFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIAVGMATNIPTHNPSEV 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  ++  GRG   +RA+  +E
Sbjct: 199 IDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFATGRGAVIIRAKADIE 257

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DIRDES      V+    R 
Sbjct: 258 EIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDESDRSGMRVVIEIKRD 317

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++A R EV+ RRS F 
Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGK-PRLMGLKDVLEAFIAFREEVILRRSRFE 376

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411
           +     R  IL GL+IA  NID +IA+IR                              D
Sbjct: 377 LNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQWDAAEVEPLLALIHD 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  +     ++  ++ S  ++
Sbjct: 437 DGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEVAQRINELLEIIGSHVRR 496

Query: 472 WNQIACEIREVK-EIFSKSTDLGRRRTTFCEVSRADKATLQ--QAMIEKEPITVVISNRG 528
              +  E+   + EIF+             E+  AD A  Q  +++IE   + V I+  G
Sbjct: 497 MEVLRDELSVARAEIFTPR---------MTEI--ADYAGDQDDESLIEPGQMVVTITREG 545

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TL 575
           +I        R+        +    +  D +  + +AHT   ++  S+ GK Y      L
Sbjct: 546 FIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQKVWRL 605

Query: 576 P-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           P AG    GR     + LL DL    D +TA +
Sbjct: 606 PEAGPAAKGRA---LVNLLPDL--GSDSITAVL 633


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 360/601 (59%), Gaps = 57/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L+++I GPDFPT GII   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPEVTVDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+V+ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALIDGR-PRVLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 Y 573
           Y
Sbjct: 601 Y 601


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/662 (38%), Positives = 381/662 (57%), Gaps = 71/662 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D +RIV+
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ M+  F +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420
           RR+ F ++    R  IL+GL IA  N+D II +IR    P P    R             
Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRK--APNPENAKRELLTHPWQLGHVA 420

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + LTE Q  AIL+LRL+ L  L   +I  E   L
Sbjct: 421 DMLAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L    K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +
Sbjct: 481 LDAIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDL 532

Query: 515 IEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  
Sbjct: 533 IAQEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCF 592

Query: 567 STDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619
           S+ G+ Y L    L  + RG  G  I  ++ LN N+ I     V A+  D   K +V+++
Sbjct: 593 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMTT 649

Query: 620 KG 621
            G
Sbjct: 650 AG 651


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 350/576 (60%), Gaps = 27/576 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E  L     FKKSA  VG+V+G+
Sbjct: 28  MEKSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDNLTADKPFKKSATCVGDVLGR 87

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+LVRLAQ F  RY L+ G GNFG+IDGD  AAYRYTEAR++++++ +L+
Sbjct: 88  YHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSIDGDPPAAYRYTEARLSKISDEMLR 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VD+   ++E   EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+  A + 
Sbjct: 148 DIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVINATIC 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++DNPE  +  L+E+I GPDFPT GII+  R  I  +Y  GRG   VRAR   EE G+  
Sbjct: 208 VLDNPEAELCDLMEHIKGPDFPTKGIIM-GRSGIRAAYATGRGRLCVRARTEFEEFGKDR 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPYQV K  LI+ +A+ +  KR+  + DIRDES  +   ++    R  +P ++
Sbjct: 267 TRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGISDIRDESDRNGMRIVIELKRDANPQVV 326

Query: 326 MESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           +  +F  + ++T F +NM  L    G++ P+++ L  IL E++A++ +V+ RR+ + ++ 
Sbjct: 327 LNRLFAQTQLQTTFAINMLALVEVNGKLQPRILSLRHILDEYIAYQEQVIIRRTKYDLKK 386

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
              R  +L+GLLIA  NIDE+I IIR+  D  K  ++ RFSL + Q  AIL++RL++L+ 
Sbjct: 387 AQERAHLLEGLLIAQDNIDEVIHIIRSRYDDAKEKLMERFSLDDVQAQAILDMRLKALQG 446

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L+  ++++E   L A       LL S +     +  E+  +++ +      G  R T  E
Sbjct: 447 LDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKY------GDERVT--E 498

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
           +   +     + +IE+E     ++  G+I+ L + +          ++A+  KE D +  
Sbjct: 499 IQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDT 558

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSG 583
              A T D IL  +  G     K Y +P AG +  G
Sbjct: 559 VFTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKG 594


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 376/611 (61%), Gaps = 32/611 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N    +++  V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   
Sbjct: 3   NLFENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSK 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGDSAAA 
Sbjct: 63  SPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT +AE +L+ +D+D VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 123 RYTEARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H++ E+ +  L L+D+   S+E+++  I GPDFPTGG+I   ++ I+++YR GRG 
Sbjct: 183 NIPPHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIF-GKKGIIDAYRTGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            ++RA+  +E+       I++ E+PYQ  K+RL+E+IA L+  K I  + ++RDES  E 
Sbjct: 242 VKIRAKTHIEQKSNKD-IIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ ++F  + ME  F + M  +   + P++  L  +LK +L HR
Sbjct: 301 IRVVIELKRDAM-SEIVLNNLFKQTTMEATFGVIMLAID-NKEPKIFTLIELLKLFLNHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+I +I+   + +  +  +V++FSL+E
Sbjct: 359 KTVIIRRTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQFSLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I +EL  +LAE E++D++L S       I  E+ E+K  
Sbjct: 419 IQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAILKSETLIEQIIKDELIEIKNK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           F+             E+         + +I  E + V I++RG+I+ + S + +      
Sbjct: 479 FNCP--------RITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRVPSKTYEKQKRGG 530

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
               A+   + D ++    +   D ++ ++  G     K Y +P G   S    G+A+  
Sbjct: 531 KGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEG---SRTAKGKAVVN 587

Query: 593 LIDLNHNQDIV 603
           LIDL  ++ I+
Sbjct: 588 LIDLQADEKIM 598


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/629 (38%), Positives = 361/629 (57%), Gaps = 65/629 (10%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +KK+ARIVG+V+GK HPHGD ++
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYTEAR+ +V+  +L  +DED VDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+  ++EPVV P++FP+LL NG SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ +    IV+ EIP
Sbjct: 181 DELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K +LIEKI EL+  KRI  + +IRDES +    V+    R+ +   ++  I  L+ 
Sbjct: 240 YQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           + + F +N  VL+  R P +M L  I++ ++  R+EVL RR+ FR++    +  I  GL 
Sbjct: 300 LRSSFSVNTLVLNNNR-PALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLY 358

Query: 395 IAYLNIDEIIAIIRNEDKPKPV--------------------MVSR---------FSLTE 425
           IA L+IDE+I IIR    P                       ++S          + LTE
Sbjct: 359 IAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   +I   ++E+K  
Sbjct: 419 LQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNR 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-SH-------S 537
           F+       R+T+  E   +D     + +I +E + + ++  G+I+ +K SH        
Sbjct: 479 FAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG-------- 585
                   KE D +      +T   +L  S  G+ Y L    L     + RG        
Sbjct: 531 KGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFP 590

Query: 586 --HGEAIQLLIDL----NHNQDIVTAFVY 608
              GE I  ++ L    + NQ+IV    Y
Sbjct: 591 LAEGETITNIMPLPSENDENQNIVFTTAY 619


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/593 (39%), Positives = 357/593 (60%), Gaps = 29/593 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRRI++A++++G+      KKSARIVGEV+GK HPH
Sbjct: 21  YLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKSARIVGEVLGKYHPH 80

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEARM+ +   +L  +++
Sbjct: 81  GDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEARMSSITTELLTDINK 140

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   ++E   EP V P++FPNLL NG++GIAVGM+TSIP HN+ E+ +  + LI  
Sbjct: 141 ETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHNLGEVIDGVVKLITK 200

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+ ++L+  I GPDFPTGG I+  R SI ++Y+ GRG   VRA+  +E++      I+
Sbjct: 201 PEITTKELMTIIKGPDFPTGGQIM-GRGSIYKAYKTGRGKLTVRAKTRIEDLKVNRKQII 259

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           V E+P+QV K+RLI+KIA L+  ++I  + DIRDES  D +RIV+  K R   P++++  
Sbjct: 260 VDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIELK-REATPEVVLNQ 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  S ++  F   M  L +   P+V+ L  IL+ +L H+++V+ RR+ + +     R  
Sbjct: 319 LYKHSRLQITFSTIMIAL-VNNEPKVLSLKEILEHYLEHQKKVITRRTKYDLDKALDRAH 377

Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+G  IA  NIDEI+ +I+   + D  +  ++  + L+E Q +AIL +RL+SL  LE  
Sbjct: 378 ILEGYKIALANIDEIVEMIKEAEDVDTARIALMDDYELSEIQANAILRMRLQSLTGLERN 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E D L A+  +  S+L    +  N +  EI E+K+ ++      +RRT        
Sbjct: 438 KIDTEYDELQAKITRYRSILADEDKLLNIVKKEILEIKDKYND-----KRRTKIM----- 487

Query: 506 DKATLQQAMIEKEPITVVI--SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIAL 555
           DK T  +     E   +VI  +++G+I        RS +     +  +  KE D ++   
Sbjct: 488 DKVTDLEIEDLIEEEQIVITMTHQGYIKRMALDLYRSQRRGGKGVIGISTKEEDFVENIF 547

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF 606
              T  + L  S  G+ Y L    +  +GR   G AI  L++L   + I    
Sbjct: 548 TTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARGTAIINLLELKEEERITAVI 600


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/601 (39%), Positives = 358/601 (59%), Gaps = 58/601 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +++ YL+YA+S I  RA+PD+RDG KPVHRR+++AM+E+G  +   +KKSARIV
Sbjct: 11  ISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS AA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP HN+ E 
Sbjct: 131 AHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNLNET 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALIDNPE++I +L+E++ GPDFPT GII    + I E+Y  GRG  ++RAR  VE
Sbjct: 191 VSACIALIDNPELTISELMEFLPGPDFPTYGII-NGTKGIREAYETGRGRVQMRARTSVE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   I+V EIPYQV K++LIE+IAEL+  K+I  +  +RDES +D +RIV+  K R
Sbjct: 250 TDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIEVK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++L+ +++  + M+T F +NM  L +   P+++ L  +L+ ++ HRREV+ RR+ +
Sbjct: 309 GEVPEVLINNLYKQTTMQTVFGINMVAL-INSQPKLLNLKDVLEAFIRHRREVVTRRTIY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    +  IL+GL +A  NIDE+I +I+    P   K  M+ R               
Sbjct: 368 DLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEKVE 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL +RL  L  LE+ +I +E  +L+ +  +
Sbjct: 428 MKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKIAE 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L +  +    +  E++EV E F       +RRT   E+  + +    + +I  E  
Sbjct: 488 FLEILRNPDRLTEVVREELQEVVENFGD-----KRRT---EIDHSYQDIDAEDLIAVENR 539

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S  G+I++  L  +          SA   KE D +   + A T D +L  S  GK 
Sbjct: 540 IVTLSRDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKL 599

Query: 573 Y 573
           Y
Sbjct: 600 Y 600


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 404/706 (57%), Gaps = 38/706 (5%)

Query: 12  LVEENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +VEE+ +      + E R  +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 1   MVEEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 61  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +++ ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGM T
Sbjct: 121 RYTEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A   L+ NP+ + + L+E + GPDFPT GI++  +  I ++Y  G+G 
Sbjct: 181 NIPPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVI-GKAGIKKAYETGKGR 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRAR  ++ +  G   I+V+EIPY V K++L+E+IA+L   KRI  +  +RDE+    
Sbjct: 240 IIVRARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +     +++ ++F  + M+T F  NM  +  G VP+ + L  IL+ +L H+ 
Sbjct: 300 MRIVIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQG-VPKTLSLKQILRRYLDHQE 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           E++ RRS F  +  + R  IL+GL IA  +IDEI+ I+R+    D+ K + + ++ L++ 
Sbjct: 359 EIIRRRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYGLSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I +E  +L+AE   ++ +L S ++++  I  E+ E+++ F
Sbjct: 419 QAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV------- 538
                   RRT   E+   +   L+ + +IE+  + + +S +G+I+ ++           
Sbjct: 479 GDE-----RRT---EIRVGEITNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGG 530

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLID 595
             +  +  ++GD +   L   T D IL  +  G+ + +    +   GR   G  I  L++
Sbjct: 531 RGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLN 590

Query: 596 LNHNQDIVTAF-------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L  ++ +             DS      V+ +G        E       G   + +  ++
Sbjct: 591 LQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDD 650

Query: 649 KMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689
           ++  V++ +G+   ++G ++   + F+ D +  M R     +G+RL
Sbjct: 651 ELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSMGRTATGVRGIRL 696


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 268/772 (34%), Positives = 423/772 (54%), Gaps = 63/772 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K + +   + + +L Y++S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSA
Sbjct: 13  IKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITADKPHKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYDS+VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 73  RIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARL 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V+  I++ +D + V F D Y+  + EP      FPNLLANG  GIAVGMATSIP HN+
Sbjct: 133 AKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIAVGMATSIPPHNL 192

Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +E+  A  A IDN +I+I+++L+ +I+GPDFPTG ++      + E Y+ GRG   +RA+
Sbjct: 193 REVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIR-MREGYKTGRGAVTIRAK 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE  R +  I +TEIPYQ  K++LIE+IAEL+  K++  + DIRDES  E +RIV+ 
Sbjct: 252 VALEENDRHARFI-ITEIPYQTNKAKLIERIAELVKTKQLEGISDIRDESNYEGIRIVIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLF 373
            + R  +PD+++  ++  ++++T + LN+  LS+   +P ++ L  I+K ++  +  V+ 
Sbjct: 311 LR-RDSNPDVVLSKLYKFTNLQTTYSLNL--LSLHNNIPVLLDLKSIIKHYVDFQINVII 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           +RS F    I++R  IL+ L  A  NID I+ I+RN    ++ K  +   F   E Q  A
Sbjct: 368 KRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTEAFGFDEEQNKA 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS---LLNSGKQQWNQIACEIREVKEIFS 487
           IL++RL+ L  LE  +I+ E+  +   KE+ID    L++   +Q N +  ++ E+ E F 
Sbjct: 428 ILDMRLQRLVGLERGKIQQEMAQI---KERIDYLTLLISDETEQNNVLKNQLSEIAEKFG 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
            +     RRT   +    D     + +I      +++S+ G+IR +      +       
Sbjct: 485 DN-----RRTETIDEGLMD--IEDEELIPDVKTMILLSDEGYIRRVDPEEFRVQKRGGRG 537

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
            +++    D + IA      D +L  +  GK +                LP  N L+G  
Sbjct: 538 VSVNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTARGLPIVNFLNGLT 597

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ I  ++ L +        V +    L  ++ KG     + S      + GK  + + 
Sbjct: 598 AGDKITAILPLRN--------VKEKMNYLTFITEKGMIKKTDISLFDNINKNGKIAINLK 649

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700
            ++++  V   TG D + V  ++ K++    + +  +SR     K ++L    D  +  V
Sbjct: 650 EDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLSRTASGVKAIKLDE-NDVVVGAV 708

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             F I E +T I S G S+ ++  D     G R G G  V     ++G F S
Sbjct: 709 TSFGI-ENITTISSKG-SFKKTNIDEYRISG-RNGKGIKVMNLNEKTGDFKS 757


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++DGDSAAA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDSAAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 197 LGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR PQ+M L  +L+ ++A R +V+ RR
Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLRLFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  +L GL IA  NIDEII +IR    P   +  +++R            
Sbjct: 375 TKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARDWEAKDVAAMIT 434

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+  Q  AIL+LRL  L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLAIEIADYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  VK  F+       R+TT  E    +     + +I++E + V +S+
Sbjct: 495 SRARVQTIIKEELAAVKAEFATP-----RKTTIIE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   +    G G+A+  ++ L   + I T
Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/713 (35%), Positives = 403/713 (56%), Gaps = 47/713 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++ A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKTGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN   + + +  +++RF LTE Q
Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMARFELTERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E ++LLA    +  +L    +    I  E+ E K  F 
Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPGRVIAIIKEELDESKRKFG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
              D  R      EV     +   + +IE+E + + +SN+G+I        RS K     
Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584
           +      + D ++  +   T D +  ++  G+ Y                LP  NLL   
Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             GE IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+
Sbjct: 590 DEGETIQTVINAKSDE-------ASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
              +++  V   TG+   ++G      + F  + I  MSR   GV+  + +DG
Sbjct: 643 REGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMSRMAAGVKGVTLRDG 695


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 23/574 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++KS
Sbjct: 6   NIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 126 MTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R++
Sbjct: 186 LTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIV-GKSGIRKAYETGRGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  E +RIV+ 
Sbjct: 245 AEIEE-EKGRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVIE 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+ R
Sbjct: 304 LK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLKHYIKFQEEVITR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F +     R  IL+GL IA  +IDE+I +IR      + +  ++SRF L+E Q  AI
Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQATAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +     
Sbjct: 422 LDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543
              RR+   +    D     + +IE++ + + +++ G+I+ L        K     + A+
Sbjct: 480 ---RRSEIIQGEGNDIDI--EDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAM 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             KE D ++  + A T D IL  +  G+ Y L A
Sbjct: 535 TTKEDDFVEHIITASTHDNILFFTNLGRVYQLKA 568


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 407/713 (57%), Gaps = 47/713 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++E
Sbjct: 300 FIIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q
Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+
Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFA 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
              D  R      EV     +   + +IE+E + + +S++G+I        RS K     
Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584
           +      + D ++  +   T D +  ++  G+ Y                LP  NLL   
Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             GE+IQ +I+   ++             L+ V+ +G     +E+E     + G   LK+
Sbjct: 590 DEGESIQTVINAKSDEG-------SDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
              +++  V   TG+   ++G      + F  D I  MSR   GV+  + +DG
Sbjct: 643 REGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695


>gi|332878574|ref|ZP_08446294.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683475|gb|EGJ56352.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 837

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/633 (37%), Positives = 376/633 (59%), Gaps = 42/633 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+    A+KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSSRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GDS AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEDMLSDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGII    E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +   +EV +G  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA   +RIV 
Sbjct: 244 KTEFQEV-KGKECIVVTEVPYQVDTSVLLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F K R   P++++ ++F  ++++T F +N   L  GR P+++ L  ++  ++ HR EV++
Sbjct: 303 FLK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PELLNLKDLIYHFVEHRHEVVY 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R+ IL+G +      D +   I IIR  DKPK  +++ F LT+ Q +A
Sbjct: 361 RRTDFELRKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +    
Sbjct: 421 ILALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRVEIIKQELLEIKEKY---- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542
             G  R +  E +  + +   + MI  + + + IS+ G+I+       K+ S   V   A
Sbjct: 477 --GDERRSVIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTPLSEYKTQSRGGVGQKA 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              ++ D L+    +     +L  +  GK      Y +P G   S    G A+Q LI++ 
Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAVQNLINIE 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621
            + D + AFV         Y S+  L++ + +G
Sbjct: 590 QD-DKIKAFVSVQNLKDEDYISSNYLIMATKQG 621


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/609 (38%), Positives = 372/609 (61%), Gaps = 29/609 (4%)

Query: 15  ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           EN K   L   +E+     YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +FKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT+
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ + E+++++Y  G+G  
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +RAR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  E +
Sbjct: 248 VIRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGI 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL  K +  DP ++M  ++  +++   F +N N+  +  +P+ + L  ++ E++ HR+
Sbjct: 308 RIVLEIK-KGFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRK 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            +L RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E 
Sbjct: 366 NILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEI 425

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N     IRE  EI 
Sbjct: 426 QANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNM----IRE--EII 479

Query: 487 SKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-- 543
           + S   G  RRT         K ++   M ++E + V+++ +G+I+ +      L  +  
Sbjct: 480 NLSLKFGDDRRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRVLQDEYKLQGIGG 538

Query: 544 ------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                   ++ D + +AL  +T D +L++S +GK Y + A  +   S    G+ I+ LI+
Sbjct: 539 KGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELIN 598

Query: 596 LNHNQDIVT 604
           L   ++I+ 
Sbjct: 599 LGEKEEILA 607


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/646 (38%), Positives = 375/646 (58%), Gaps = 74/646 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSA
Sbjct: 8   VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALID+  ++ + L+EYI GPDFPT GII   R  IV++YR GRG   +RAR 
Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGII-NGRAGIVQAYRTGRGRVYMRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
            +E   + G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES  E +RIV+ 
Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            + R  + ++++ +++  + ME+ F +N   L  G+ P+++ L  +L  ++ HRREV+ R
Sbjct: 307 LR-RGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MV 418
           R+ + ++    +  +L+GL +A  NID +I +I+                 KP  V  M+
Sbjct: 365 RTVYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQML 424

Query: 419 SR----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
            R                      + L+  Q  AIL+LRL+ L  LE  ++ ++   LL 
Sbjct: 425 ERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLE 484

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++  +L + ++    I  E++ V+E ++       RR+     SR D +   + +I 
Sbjct: 485 QIAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV-ASRQDFS--MEDLIA 536

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +SN G+         R+ K      SA   K+ D ++  L A T D +LL + 
Sbjct: 537 EETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTN 596

Query: 569 DGK-----AYTLPAG----------NLLSGRGHGEAIQLLIDLNHN 599
            GK      + LP G          NLL   G  E I  ++ L+ +
Sbjct: 597 AGKVFWLRTFELPQGGRASRGKPIVNLLPALGADERITAILRLDAD 642


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 379/644 (58%), Gaps = 39/644 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ M ++G+  G  +KKSARIV
Sbjct: 20  INIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSARIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+IDGD  AA RYTEAR+ + 
Sbjct: 80  GDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARLKKF 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +++D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++  HN+ E+
Sbjct: 140 AEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNLSEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A IDN EI I +L++YI GPDFPTGGII      + E+   GRG   +RA+  +E
Sbjct: 200 VDGTVAFIDNREIEISELMQYIKGPDFPTGGIIY-GYNGVKEACETGRGRVVMRAKAEIE 258

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +IRDES  +   V++   R 
Sbjct: 259 TTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIKRD 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++ +++  + ++T F +N   L  GR P +M L  ++ E++ HR EV+ RR+ F 
Sbjct: 319 ANANVVLNNLYKYTALQTSFSVNNIALVKGR-PMMMNLKDMIHEFVEHRHEVVIRRTKFE 377

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436
           +   ++R  IL+G LIA  ++DE+I +IR  + P+     ++ RF+L++ Q  AIL++ L
Sbjct: 378 LAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQARAILDMTL 437

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE  +IK E + L+   E +  +L+    +   I  E+ E+K+ +        RR
Sbjct: 438 RRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE-----RR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548
           +    V  A+   ++   I+ E I + IS+  +++                    + +E 
Sbjct: 493 SII--VHSAEDMRMED-FIDDEEIVITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREE 549

Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           D  +  + A   + +L  +  G     +A+ +P G+  S    G A+Q +I++  ++ I 
Sbjct: 550 DFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTS---RGRALQNIINIPKDEKI- 605

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            A++        V++ K   ++ E + II  T+KG T  K S E
Sbjct: 606 KAYIK-------VINLKDQEYL-ENNFIIMCTKKG-TIKKTSLE 640


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 355/597 (59%), Gaps = 29/597 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+ +  A+KKS
Sbjct: 11  NIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLGVHYNKAYKKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ +  RYP++ GQGNFG++DGDS AA RYTEAR
Sbjct: 71  ARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDSPAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAVGMAT++  HN
Sbjct: 131 LKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAVGMATNMAPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A IDN +I+I +L+ ++ GPDFPTG  I    + I  ++  GRG   +R+R
Sbjct: 191 ITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIY-GYQGIRSAFETGRGRIVLRSR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V+EIPY V K+ +IEKIA ++  K+I  + DIRDES  +   ++F 
Sbjct: 250 STIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDESDREGMRIVFD 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  S +++ F +N   L  GR P  + L  ++  ++ HR EV+ RR
Sbjct: 310 LKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGR-PMTLNLKEMIMYFVEHRHEVVTRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + F +   ++R  IL+G LIA  ++DE+I +IR    P+     +++ F ++E Q  A+L
Sbjct: 369 TQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMTNFGMSEIQAKAVL 428

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL+ L  +E  +I  E + ++A   ++  +L S + +   I  E+ E+KE +      
Sbjct: 429 DLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKELRMEIIKQELDEMKERYGD---- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            +RR+     S  D   ++  MI +E + + IS+ G+I        R+     V      
Sbjct: 485 -KRRSDIVHAS--DDINIED-MIPEEQMVITISHEGYIKRTALSEYRTQGRGGVGSKGAG 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
            KE D  +    A T + +L  +  G     K Y +P G   +    G AIQ +I +
Sbjct: 541 SKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTT---KGRAIQNVIQI 594


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/606 (40%), Positives = 353/606 (58%), Gaps = 57/606 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALI+NP+++I +L+EYI GPDFPT  II   R+ I+++Y  GRG   +RA+
Sbjct: 187 INEVVSGCLALIENPDLTINELMEYIPGPDFPTAAII-NGRKGIIDAYHTGRGRAVMRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L IA  NID IIA+I+    P    V                
Sbjct: 364 RTVFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGML 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL  L  LE  +I  E + LL  
Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E++EV E F      G  R T    +  D +   + +I +
Sbjct: 484 IAALLYILRSPERLMEVITEELQEVLENF------GDERRTVINANEVDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +  +L  +          +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 596 GKMYWL 601


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/722 (34%), Positives = 407/722 (56%), Gaps = 48/722 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+G+      KK
Sbjct: 7   ENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYD++VR+AQP+  RY L+ GQGNFG+IDGD+ AA RYTEA
Sbjct: 67  SARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE +L  +++D VD++  +++   EPVV P+K P LL NG SGIAVGMAT++  H
Sbjct: 127 RLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N EI+I +L+EY+I PDFPTGGII      +  ++  GRG   +R 
Sbjct: 187 NLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIY-GYNGVKAAFETGRGRIVMRG 245

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E + G     IV+TEIPY V K+ ++EK A+LI  K+I  +  IRDES      ++
Sbjct: 246 KANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGMRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   R   P +++ +++  + ++T F +N   L  GR P  + L  ++  ++ HR EV+ 
Sbjct: 306 YELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGR-PYTLNLKDLIVHYVDHRHEVVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR+ + ++  ++R  IL+G LIA  ++DE+I++IRN   P+     ++ RF L+E Q  A
Sbjct: 365 RRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIERFDLSEIQARA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  +E  +I  E   ++A  E++  +L +  ++   I  E+ E+K+ ++   
Sbjct: 425 ILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKTELTEMKDRYADD- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
               RRT   E+    +    + MI  E + + +S++G++        R+     V    
Sbjct: 484 ----RRT---EIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGGVGSRG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +  KE D  +    A T + +L+ +  G     KAY +P GN  S    G  IQ LI++ 
Sbjct: 537 VSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTS---KGRPIQNLINIQ 593

Query: 598 HNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646
            +  I +           Y +   L++V+ KG   +++++ +   +R    G   L +  
Sbjct: 594 SDDRIRSIIQVNDLNDADYINNHFLVMVTKKG---VIKKTTLEQYSRPRTNGIIALNIRE 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++++  V    GD H+ +  ++ + + F    +  M R   GV+  +    G  D +   
Sbjct: 651 DDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITLT--GQDDFVIGM 708

Query: 705 IC 706
           +C
Sbjct: 709 VC 710


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +LA+  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           Y L    +   S    G  +  L+ L+  + I T    D
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/600 (39%), Positives = 366/600 (61%), Gaps = 25/600 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + +   +   YL Y++S I  RA+PD+RDG KPVHRRI++A+ ++G+      KKSA
Sbjct: 8   VKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEARM
Sbjct: 68  RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +A  ++  + ++ VDF   ++E   EP V P++FPNLL NG+SGIAVGM+TSIP HN+
Sbjct: 128 SPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  + LI+ PEI+ ++L+  I GPDFPTGG I+  R SI ++Y+ GRG   VRA+ 
Sbjct: 188 GEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIM-GRGSIYKAYKNGRGKLTVRAKT 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VE++      I+V E+PYQV K+RLI+KIA+L+  +++  + DIRDES  D +RIV+  
Sbjct: 247 RVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIEL 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R   P +++  ++  S ++  F + M  L + + P+V+ L  IL+ +L H++EV+ RR
Sbjct: 307 K-REATPKVVLNQLYKHSRLQVTFSVIMIAL-VDKEPKVLSLKQILEHYLEHQKEVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + + +     R  IL+G  IA  NIDEI+ +I+N D+       ++  + L+E Q +AIL
Sbjct: 365 TQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMENYKLSETQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+SL  LE  +I+SE  +L  +     S+L S ++    I  EI  +K  ++     
Sbjct: 425 RMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEEKLLEIIKEEILAIKAKYNDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             RRT+   ++RA    L+  + E++ I V ++N+G+I        RS +     +  + 
Sbjct: 482 --RRTSI--MNRATDLELEDLIEEEQ-IVVTMTNQGYIKRMPLDLYRSQRRGGKGVIGIS 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI 602
            KE D ++      T  + L  +  G+ Y L    +  +GR   G AI  L++L   + I
Sbjct: 537 TKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARGTAIINLLELEEGEKI 596


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/716 (36%), Positives = 406/716 (56%), Gaps = 44/716 (6%)

Query: 5   NISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           NI     L EE     ++  ++   +E+ +L Y++S I +RA+PD+RDG KPV+RRI++A
Sbjct: 8   NIVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYA 67

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++ G     A  KSA+IVGEV+G  HPHGD S+YD++V LAQP+  RY L+ GQGNFG+
Sbjct: 68  MNKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGS 127

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM +V   +L  +D++ VDFRD ++  + EPVV PS  PN+L NG 
Sbjct: 128 MDGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQ 187

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A IDNPEI++++LL +I GPDFPTG  +      + 
Sbjct: 188 MGIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGG-APMR 246

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA   +EE   G + I+VTE+PY + K   ++K+ EL++AK+I  + D
Sbjct: 247 QAYETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIAD 306

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            RDESA   VR+V+  K  +  P  ++  ++ L+ ++T F  N+  L  G  P+VM L  
Sbjct: 307 ARDESARGKVRVVVELKKDAY-PKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKE 365

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMV 418
           IL E++ HR+ V+ RR+ F ++    R  IL+GL IA  +IDE+I  IR   D     ++
Sbjct: 366 ILAEFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYDDADKRLM 425

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF L+E Q  AIL ++LR L+ LE  +I+ EL  L    +K++++L S ++  N +  E
Sbjct: 426 ERFGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLHELIKKLEAILASEQEILNVVKTE 485

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-- 536
           +  +K+   K  D  R +    E+    K + ++ + E+E + ++ S     R+L S   
Sbjct: 486 LLAMKD---KYGDERRSKIINHELG---KFSDEELIPEEESVILLTSENYIKRTLVSDYR 539

Query: 537 -----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                      +  KE D +   + A T D +L  +  G     KAY +PA +L      
Sbjct: 540 RQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFRLKAYEVPAASL---SAK 596

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTR-KGK 639
           G A   L+ L   + I     ++        L + + KG    V+++ +   AN R  G 
Sbjct: 597 GVAAVNLLQLQPEEKITAIIKHEKNANDKGYLFMATQKGT---VKKTPVKDYANVRTNGL 653

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
             +K+   ++++ + + +GD+  ++  +    I F+      M R     +GVRL+
Sbjct: 654 IAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRGVRLR 709


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/475 (43%), Positives = 313/475 (65%), Gaps = 18/475 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELD----------NLLAEKEKIDSLLNSGKQ 470
            Q DAIL+ +LR L KLEE +I+ E D           LL  + ++++LL    Q
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLEKRNQ 471


>gi|332522461|ref|ZP_08398713.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
 gi|332313725|gb|EGJ26710.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
          Length = 836

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/641 (37%), Positives = 378/641 (58%), Gaps = 41/641 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIEITKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  K R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEVK-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLL+A  ++DE+IAIIRN       +  ++SRF L+E Q
Sbjct: 358 VITRRTRFDKEKAEARAHILEGLLVALDHLDEVIAIIRNSQTDVIAQAELMSRFQLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIF 486
             AIL++RLR L  LE  +I+SE D+L+A    +  +L     + ++I A  I+E+ EI 
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL----AKPDRISAIIIQEMDEIK 473

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
            K  D  R      EV   +     + +IE E + + +SN+G+I        RS K    
Sbjct: 474 RKYADPRRTELMVGEVLSLE----DEDLIEVEDVLITLSNKGYIKRLAQDEFRSQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +      + D +K  +   T D +L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLK- 588

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
               E IQ +I+    +DI   F + +T + LV  +  + F
Sbjct: 589 LDEEETIQTIINA-RKEDIDNKFFFFTTRQGLVKRTNASEF 628


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 250/702 (35%), Positives = 384/702 (54%), Gaps = 62/702 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL YA+S I  RA+PD RDG KPVHRRI+++M+E G      + KSAR+VG+VIGK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQS+YD++VR+AQ F  R PLI GQGNFG++DGD  AAYRYTEAR+T+ A  +L 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  ++EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP ++I++L+  + GPDFPTGG+I+  R  I  +Y LGRG   +R +  +E + +  
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIRAAYHLGRGSIVMRGKVAIETIRKER 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +++TEIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R    D++
Sbjct: 240 EALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F +NM  L  GR P++M L  +L  ++  R  V+ RR+ F +     
Sbjct: 300 LNQLYRFTPLQTSFGVNMVALDSGR-PRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------------- 420
           R  IL GL IA  NIDE+I +IR    P   +  ++SR                      
Sbjct: 359 RAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRIS 418

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I+ ELD L  E      +L S ++    I 
Sbjct: 419 PDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+ EVK  F+       RRT   E    +     + +I++E + V +S+ G++      
Sbjct: 479 TELAEVKAEFATP-----RRTVIME---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSG 583
             R+ +      + +  ++ D +     A T   +L  S+ G+ Y      LP   + + 
Sbjct: 531 AYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP---MAAP 587

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY---DST---CKLLVVSSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T       +ST     ++  ++ GN    + S+ +   R 
Sbjct: 588 NARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRS 647

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           G   +K+   E +  V   T  D V + G   + + F +  +
Sbjct: 648 GIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDV 689


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 373/609 (61%), Gaps = 29/609 (4%)

Query: 15  ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           EN K   L   +E+     YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +FKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT+
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ + E+++++Y  G+G  
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSV 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +RAR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  E +
Sbjct: 248 VIRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGI 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL  K +  DP ++M  ++  +++   F +N N+  +  +P+ + L  ++ E++ HR+
Sbjct: 308 RIVLEIK-KGFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRK 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            +L RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E 
Sbjct: 366 NILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEI 425

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N     IRE  EI 
Sbjct: 426 QANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNM----IRE--EII 479

Query: 487 SKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-- 543
           + S   G  RRT         K ++   M ++E + V+++ +G+I+ +      L  +  
Sbjct: 480 NLSLKFGDDRRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRVLQDEYKLQGIGG 538

Query: 544 ------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGR-GHGEAIQLLID 595
                   ++ D + +AL  +T D +L++S +GK Y + A G   S R   G+ I+ LI+
Sbjct: 539 KGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELIN 598

Query: 596 LNHNQDIVT 604
           L   ++I+ 
Sbjct: 599 LGEKEEILA 607


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 388/668 (58%), Gaps = 65/668 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G 
Sbjct: 30  SGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGN 89

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSA
Sbjct: 90  DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 149

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 150 AAMRYTEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT  II   R  I+++YR G
Sbjct: 210 MATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 268

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG   +RA   VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDES
Sbjct: 269 RGKVYIRASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDES 328

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +D +RIV+  K  ++  ++++ +++ L+ ++  F +NM  L  G+ P+++ L  I+  +
Sbjct: 329 DKDGMRIVIEVKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 386

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420
           + HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P   K  +++R 
Sbjct: 387 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARS 446

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 447 WDLGNVAAMLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKL 506

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +LL + E +  +L S ++    I  E+  +++ ++       RRT   E + AD 
Sbjct: 507 LEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYNDP-----RRTEITE-NTADI 560

Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+++        + +      SA   K+ D ++  L A+T
Sbjct: 561 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANT 618

Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613
            D IL  S+ G+ Y +    L  + RG  G  I  L+ L  ++ I TA +    Y+    
Sbjct: 619 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERI-TAILPVREYEEGYN 677

Query: 614 LLVVSSKG 621
           + + ++ G
Sbjct: 678 VFMATASG 685


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/705 (36%), Positives = 405/705 (57%), Gaps = 52/705 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+   ++ +KS+
Sbjct: 16  VENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSS 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 76  SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYTEARM 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             V+E +L+ +D+D VDF   Y++   EP V PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 136 AAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LID+P+ ++E L+E++ GPDFPTG  IV  R++I  +Y+ GRG  RVRA +
Sbjct: 196 GEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAEF 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VEE   G   IV+TE+PYQ  K+RL+E+IAE +    I  + D+RDES  D VRIV+  
Sbjct: 255 EVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVEC 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  + +++ ++  + + +E  F + +N+  +   PQV+ L   L+E++AHRREV+ RR
Sbjct: 315 K-RGANVEVV-KNKLLENHLEKTFGV-INLALVDGQPQVLSLKETLEEYIAHRREVVRRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           S + +   + R  IL+G L A  N ++++ +IRN    D  K  +   +  +  Q   I+
Sbjct: 372 SEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQEAYDFSAEQATHIV 431

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  +E  +I+ E +++ AE E++ S+L S ++    I  E+ E+K+ +      
Sbjct: 432 RMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKDELSEIKDEYDDD--- 488

Query: 493 GRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
             RRT+  E    D+ T+  + +I +E + VV++   +++ +     D        +   
Sbjct: 489 --RRTSIIE----DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQFDPQGRGGKGIIGA 542

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             KE D +     A+T D +L  +  GK Y L    +  +     G++   ++DL+  +D
Sbjct: 543 DVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDPGED 602

Query: 602 IVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSEEK 649
           I             FV  +T    V  + G+ F  I     I A+ ++G   + V   + 
Sbjct: 603 ITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVEVTDG 662

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
            K +V        +  EN   + F  D++  M R      G+ LQ
Sbjct: 663 TKDLV--------IASENGMTIRFDEDEVRAMGRNARGVNGIDLQ 699


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 258/714 (36%), Positives = 400/714 (56%), Gaps = 35/714 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRRI+  M EMGL    +FKK ARIVG+V+GK HPH
Sbjct: 22  YLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRANTSFKKCARIVGDVLGKYHPH 81

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRLAQ F  RYP+++ QGNFG+IDGD AAA RYTEA+M+++ E +LQ + +
Sbjct: 82  GDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAMRYTEAKMSRIGEEMLQDIQK 141

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V+F   Y++   EP V P+ FP LLANG+SGIAVGMAT++  HN+QEIC+A  A+IDN
Sbjct: 142 ETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMATNMAPHNLQEICDAISAVIDN 201

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+I+I++L+E+I GPDFP+GGII    + I +++  GRG   VR+ + +E   R    IV
Sbjct: 202 PDITIDELMEHIKGPDFPSGGIIC-GLQGIKDAFMTGRGKIVVRSVYEIETSERDHDQIV 260

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
            TEIPYQV K+ L++KI +L     IP++  +RDES  + +RIV+  K  + +P +++  
Sbjct: 261 FTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGIRIVVELKVGA-EPMVVLNQ 319

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +F  + +++ F +N   L  GR PQ++ L  +L  ++ HR EV+ RR+ F ++    R  
Sbjct: 320 LFARTALQSNFNVNNLALVQGR-PQMLTLKDMLVYYIRHREEVVTRRTQFDLRKAQERAH 378

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL I   NIDE+I II++          +VSRF L + Q  AI++++L  L  LE  
Sbjct: 379 ILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSRFGLDQIQAQAIIDMKLGRLSHLETS 438

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  EL +L  +      +L+   +    +  E+R +            RR T       
Sbjct: 439 KILEELADLEQKIAYYQEVLSDEGKILKLVQSEVRALPSSLVPKD----RRLTKIAREEL 494

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHA 557
            ++TL+   I+ E + V+ISN+G+ + +++   +              ++GD +     A
Sbjct: 495 GQSTLED-FIKDEQVVVLISNKGFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVA 553

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-- 613
            T + ++ ++  GKAY      +   S    G +I+ ++ L   + I +   +    +  
Sbjct: 554 FTHEYVMFVTNAGKAYYTKVFEIPEASKTAKGTSIKNILQLETTEKITSIISFKEFSEDH 613

Query: 614 -LLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            L++ +  G    V  +  + A  R  +       +E +   +   GD V ++ +  + L
Sbjct: 614 YLMMATRDGVVKKVSLNNFVNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGL 673

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            F  D +  M R  +GVR       GI  ++      GL  +DS  R    +EN
Sbjct: 674 RFRQDNVRAMGRASRGVR-------GIR-LLANDQVAGLLKVDSTKRILMITEN 719


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/645 (39%), Positives = 389/645 (60%), Gaps = 58/645 (8%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           + YL YA+S I  RAIPD+RDG KPV RRI++AM EM L     FKK ARIVG+ +G+ H
Sbjct: 14  QSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRYH 73

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGDQ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RYTEA+++++   +L+ +
Sbjct: 74  PHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLEDI 133

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           + D VDF   ++E   EP V P+K PNLL NGT+GIAVG+ATSIP HN++E+C+A +AL 
Sbjct: 134 ENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVALA 193

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            N +I++E+L++YI GPDFPTGGIIV   E   E Y+ GRG   V+A+  VE+   G   
Sbjct: 194 QNQDITVEELMQYIKGPDFPTGGIIV--GEVSPEVYKTGRGQVTVQAKARVEKTSSGREQ 251

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++TEIPY V K+ LI+KIAEL  + ++  + D+RDES  E +RIV+  K R    + ++
Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELK-RDAKGEAVL 310

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++  + +   FP+NM  L +G  P+++ L  IL E+  HR  V++RR+ F ++  + R
Sbjct: 311 KKLYKNTSLRKNFPINMVAL-VGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEER 369

Query: 387 VEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + I++GLLI   +ID+II  IR   +  + K  ++S ++LTE Q  AIL+LRL+ L  LE
Sbjct: 370 LHIVEGLLICIKDIDKIIETIRASQDTQEAKEKLMSGWNLTEKQAQAILDLRLQRLTSLE 429

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +++ E D L+   E I +  N  + +  +I   I+E KE+  +  D    R TF E  
Sbjct: 430 TSKLQKEHDELI---ENIKTYKNILENKQERINIFIKETKELADRFKD---PRRTFIE-- 481

Query: 504 RADKATLQQAMIEKEP-ITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                     MI+++  + V ++  G+++ +      KS  V++++L F EG        
Sbjct: 482 ---------GMIKEDTYVDVFVTRNGFVKPIELLEEEKSPIVNVASLKFTEG-------- 524

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLL 615
                 + ++S  G+ Y       LS    G +I +    + ++ +V AFV +    +LL
Sbjct: 525 ------LFIVSNKGRVYWTAGSEALS----GSSIHM---KDTDEHVVGAFVREQYNSRLL 571

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           ++++KG+   +   E    T+ G   LK+S  E+   VV ++G  
Sbjct: 572 ILTNKGSIKKIPLVEFEYKTQ-GFQILKLSEGEE---VVYISGSQ 612


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/603 (39%), Positives = 359/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDN +++++ L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNADLTVDDLMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARVEVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + M++ F +N+  L  G+ P+ M L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I+    P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ +E   +L+   +
Sbjct: 429 GADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILSLIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L S ++    I  E+ +VK  F  +     RRT     SR D  T+   + E+E +
Sbjct: 489 LIRILTSPERLMEVIREELEKVKAEFGDA-----RRTEII-ASRQD-LTIADLITEEERV 541

Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S    + +         SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 542 -VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 373/615 (60%), Gaps = 36/615 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+E+G+ 
Sbjct: 6   NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++DGD AA
Sbjct: 66  PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  GIAVGM
Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +Y  GR
Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IRDES +
Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R  + ++++ +++  + ++T F  NM  ++ G+ P+ M L  IL  +L H
Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           +RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++R+ L+
Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  +I++E  +LL   E    +L +  ++ +QI  +  E+ +
Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539
           I +K  D  R      +VS    +   + +I++E + + ++++G+I+ L +   H+ +  
Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581
              +  ++  + D ++  +   T D +L  S  GK Y +               P  NLL
Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596

Query: 582 SGRGHGEAIQLLIDL 596
            G   GE +Q +I++
Sbjct: 597 -GLDAGERVQAVINV 610


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/674 (36%), Positives = 385/674 (57%), Gaps = 38/674 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +ID     N E SI+ +L+ + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  +++RF LTE 
Sbjct: 365 EVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMARFDLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E + L+ +  ++ ++L   K     I       KEI 
Sbjct: 425 QASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAILADRKLLLGVIK------KEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +   + +I +E + + ++  G+I+ +   +         
Sbjct: 479 VISEKYGDERRTSIGFDEFDIS--MEDLIPRENVVITMTKMGYIKRMSMDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  +   + D +K      T   I+  +  G+ Y L    +   S    G AI  L+ L
Sbjct: 537 GIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
             ++ I TA +    Y+    LL+ + KG   +V+++ I   AN RK      V  E+  
Sbjct: 597 MPDEKI-TAMIPIREYEDGQYLLMATEKG---LVKKTPIKDYANVRKTGLAAIVLREDDK 652

Query: 651 KLVVKVTGDHVAVV 664
            + VK+T D   V+
Sbjct: 653 LIEVKITDDEQDVI 666


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/609 (37%), Positives = 368/609 (60%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ID+ EI+I+ L+E+I  PDFPTGGII    + + +++  GRG   +RA
Sbjct: 185 NLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIY-GYDGVKDAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+V+EIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KASFEEV-QGRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  GR PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGR-PQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I +IR   N D+ +  ++  F LTE Q  AI
Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIEAFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+        +L + +++ N I  E+ EV+  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKERRMNIIKEELLEVQRKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E +  D +     +I  E + + IS+ G+I+  SL  +       V   A 
Sbjct: 477 -GDDRRSVIEYAGGDVSITD--LIPDEQVVLTISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      + +P G+  S    G AIQ LI++  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEP 590

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 591 D-DKVMAFI 598


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/641 (37%), Positives = 378/641 (58%), Gaps = 41/641 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  K R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEVK-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F  +  + R  IL+GLLIA  ++DE+IAIIRN       +  ++SRF L+E Q
Sbjct: 358 VITRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSRFQLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIF 486
             AIL++RLR L  LE  +I+SE D+L+A    +  +L     + ++I A  I+E+ EI 
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL----AKPDRISAIIIQEMDEIK 473

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538
            K  D  R      EV   +     + +IE E + + +SN+G+I+ L        K    
Sbjct: 474 RKYADPRRTELMVGEVLSLE----DEDLIEVEDVLITLSNKGYIKRLAQDEFRAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
            +      + D +K  +   T D +L  +  G+ Y                LP  NLL  
Sbjct: 530 GVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLK- 588

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
               E IQ +I+    +DI   F + +T + LV  +  + F
Sbjct: 589 LDEEETIQTIINA-RKEDIDNKFFFFTTRQGLVKRTNASEF 628


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +LA+  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           Y L    +   S    G  +  L+ L+  + I T    D
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 272/723 (37%), Positives = 400/723 (55%), Gaps = 83/723 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN
Sbjct: 127 MEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ PE+SIE+L+EYI GPDFPT  II   ++ I E+YR GRG   +RAR
Sbjct: 187 LTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAII-NGKKGIEEAYRTGRGKAIMRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 AEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M++ F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQSSFGINMVALANGQ-PKLFNLKEMLEAFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + ++    R  IL+ L +A  NID IIA+I+    P   K  ++++           
Sbjct: 364 RTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + +TE Q  AIL+LRL  L  LE  +I  E + LL  
Sbjct: 424 EKAGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  + E F      G  R T    S  D +   + +I +
Sbjct: 484 IAGLLHILRSPERLMEVIKEELELILEQF------GDNRRTEINASAVDISL--EDLINE 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623
           GK Y L      L S +  G  I  L+ L   + I TA +    Y+    +L+ +S G  
Sbjct: 596 GKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERI-TAILPVREYEEGKYILMATSHGTV 654

Query: 624 FIVEESE---------IIANTRKGKTFLKV-----SSE-----EKMKLVVKVTGDHVAVV 664
                +E         I  N + G   + V     SSE     +  K+V    G+ VAVV
Sbjct: 655 KKTALTEYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVV 714

Query: 665 GEN 667
            EN
Sbjct: 715 DEN 717


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/604 (36%), Positives = 368/604 (60%), Gaps = 30/604 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     +KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGD  AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E IL  +D++ VD +  +++  +EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ ++  PDFPTGGII    + + ++   GRG  ++R 
Sbjct: 185 NLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIY-GYDGVKDAMHTGRGRVKIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EEV +G  CI+V E+PYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 RVRLEEV-KGRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  GR PQ++ +  ++  ++ HR +V+ R
Sbjct: 303 ILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKGR-PQLLNVKEMIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKRFELSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++L+A    +  +L   +++ + I  E+ E+KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRMDIIKEELIEIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I        ++     V   A 
Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIADEQVVITISHAGYIKRTPITEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D L+          +L  +  GK      Y +P G+  S    G AIQ LI++  
Sbjct: 534 TTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTS---KGRAIQNLINIEQ 590

Query: 599 NQDI 602
           + ++
Sbjct: 591 DDNV 594


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 256/727 (35%), Positives = 397/727 (54%), Gaps = 71/727 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+      ++  +++   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MSNTPLPPASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D    +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD 
Sbjct: 61  YDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE +L  +D+D +DF+ +Y++   EP V P++FPNLL NG  GIAV
Sbjct: 121 PAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +A  A IDNP++++++L+E++ GPDFPTGG+I+  R     + + 
Sbjct: 181 GMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLIL-GRSGSRAALQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+   EEV +    I+ TEIPYQV K++L+E+I E++  K I  + D+RDES
Sbjct: 240 GRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D VR+V+  K R   PD+++  +F  + ++T F +NM  L+ GR P++M L  ++  +
Sbjct: 300 DRDGVRVVIELK-RDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGR-PELMNLLDVITAF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----MVS 419
           +  R +V+ RR+ F +     R   L GL +A  N+D +I +IR+   P PV     M++
Sbjct: 358 VRFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRS--APDPVWAREEMMN 415

Query: 420 R--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
           R                          + L+E Q  AIL+LRL  L  LE  +I +EL +
Sbjct: 416 REWPVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKD 475

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  +     + L +  +    +  E+ E+KE F        RRT   E+   +     + 
Sbjct: 476 VTDQIADFLATLANRPKLMGILRDELVEMKERFGTP-----RRT---EIQDLEFEADIED 527

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S  G++        R+ K      + +  K  D++     A+T   +LL
Sbjct: 528 LIQREDMVVTVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLL 587

Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614
            S  G     K Y LP GN    +  G+A   L+ L   + I T           +   +
Sbjct: 588 FSNRGMVYKLKVYRLPLGNP---QARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHV 644

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLL 671
           +  +SKGN      S+  AN R          EE  +L+   T    D + +     K +
Sbjct: 645 VFATSKGNVRRNRMSD-FANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCI 703

Query: 672 IFSIDQI 678
            F +D +
Sbjct: 704 RFPVDDV 710


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/620 (38%), Positives = 369/620 (59%), Gaps = 37/620 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFA-----LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+++ L E +     +R A     +   +L Y++S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G+       KSAR VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+
Sbjct: 61  MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+ + A  +L+ +D++ VD++  Y+E   EPVV P++FPNLL NG+
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP++++++L++ I GPDFPTGG+I+  R+ I 
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIM-GRKGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VR+R  + E   G   IV+TEIPYQV ++ L++KI EL+  K++P + +
Sbjct: 240 DAYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISN 299

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + D +  +  V I++  K+ ++ P +++  ++  + ++  F + +N+  +  VP+ + L 
Sbjct: 300 VHDGADRNSPVDIIIDLKSNAI-PQVVLNKLYKHTQLQVGFGV-INLALVDGVPRTLSLR 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-- 416
            +L+ ++ H+ +V+ RR+ F ++  + R  IL+GLLIA  NIDE+I IIR     +    
Sbjct: 358 EMLRHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASE 417

Query: 417 -MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQW 472
            +  RF+L+E Q  AIL +RLR L  LE ++++ EL  L   KEKI     +L+      
Sbjct: 418 RLQERFNLSEAQTAAILEMRLRRLTGLERHKLEDELAEL---KEKIAYYKRILSDESLVR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530
             I  E+ E+K  F+       RRTT C    A+   ++  +I  E + V ++  G++  
Sbjct: 475 EVIKEELLEIKGRFNTP-----RRTTLC--GEAEDIDVED-LIADEEVAVTVTKAGYVKR 526

Query: 531 ------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                 R  K     +  ++ KE D ++    A T   +L  ST GK Y L    +    
Sbjct: 527 IPVSAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEAS 586

Query: 585 GH--GEAIQLLIDLNHNQDI 602
            H  G AI  L+ L   + I
Sbjct: 587 RHARGTAIVNLLPLVKGESI 606


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 262/734 (35%), Positives = 409/734 (55%), Gaps = 76/734 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++   +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  H++
Sbjct: 126 TKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+E+I GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 NEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409
           + F ++    R  IL+GL +A  NID+II  I+                           
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423

Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                         ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L +  ++ ++LN     +N +   IR E+  I  +  D   RRT   E SR D    ++
Sbjct: 484 ILGQIAELTAILND----FNLLMGVIREELSLILQQYGD--ERRTQIVE-SRID--FCRE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVV 617
             +  GK Y L    +  + RG  G  +  L+ L+ N+ I     +T F+ +    + + 
Sbjct: 595 CFTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENH--YVFMA 652

Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675
           ++ G    V E E  AN R  G   ++++ E+ +  V    G    ++  N  K + F+ 
Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAE 711

Query: 676 DQIPEMSR-GKGVR 688
             +  M R  KGVR
Sbjct: 712 TDVRAMGRTAKGVR 725


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/490 (43%), Positives = 322/490 (65%), Gaps = 11/490 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+ AM E+GL     +KK
Sbjct: 2   EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGTSGIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L   P+ ++E+L ++I GPDFPTGGII  S E I++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E++      +V+ EIPYQV K  LI++IAEL+   +   + D+RDES    +RIV+
Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  DP+ +++ ++  + +E  FP+N  VL + + P+V+ L  IL+E++ HR EV+ 
Sbjct: 302 ELK-RDADPEKVLKKLYKSTPLEKSFPVNFTVL-VDKQPKVLSLKEILQEFIKHRLEVIT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R+ I++GL++A  N D++I I+R   +  + + ++ +R++LTE Q +A
Sbjct: 360 RRTLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTRYNLTETQANA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL     LE  ++K E   L A+ E    +L++   +  +I   I+E+ E+ SK +
Sbjct: 420 ILDMRLARFTALETTKLKEEKKELEAQIENYKKILST---EEEKIKVFIQEMDEMLSKYS 476

Query: 491 DLGRRRTTFC 500
           D   R+TT  
Sbjct: 477 D--ERKTTIA 484



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 25/170 (14%)

Query: 523 VISNRGWIRSL-------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +I+ +G I+ +       KSH   +  L+  EGD L +A+       I +       YT 
Sbjct: 595 LITKKGIIKRMFDEDIFYKSHKHTVMPLN--EGDELAVAIADQNPSYIGI-------YTK 645

Query: 576 PAGNLLSGRGH----GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
            A  LL  R      G+  + +  IDL+ N ++  +F+ D    +L+ +SKG   +VE+S
Sbjct: 646 NADLLLFERNEVRVTGDKAKGVEGIDLDPNDEVAGSFLIDGHNYILIATSKGYMKLVEKS 705

Query: 630 EIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           E     R  KG   +K++ ++ +  ++ V  G+ V V  ++ KLL   +D
Sbjct: 706 EFPIKKRGQKGLMAVKLNKDDYVVSMIPVDIGEDVLVQTKHGKLLKIKVD 755


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 361/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419
           F ++    R  IL+G  +A  NID +IA+I+    P   K  +VS               
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVVAMVERA 428

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                              ++ L+  Q  AIL LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +        RRT   + +R D  TL   MI +E  
Sbjct: 489 LIRILNSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D +   L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 282/795 (35%), Positives = 430/795 (54%), Gaps = 94/795 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KKS
Sbjct: 7   DVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+    LA I+N +I+I++L+E I GPDFPTG  I   R  IV++YR GRG   VRA+
Sbjct: 187 LKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATI-NGRAGIVQAYRTGRGRIYVRAK 245

Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE   +     I++TEIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D+R+V+ 
Sbjct: 246 AHVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKDIRVVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K   +  D+++ +++  + ME  F +N+  L  G+ P+++ L  +L+ ++ HRREV+ R
Sbjct: 306 LKRGEIG-DVILNNLYAQTQMEGVFGINVVALVDGQ-PKILNLKQLLECFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR----------- 420
           R+ + ++    R  IL+GL +A  NIDE+I +I+N   P      ++SR           
Sbjct: 364 RTIYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  Q  AIL LRL  L  +E  ++  E    +A 
Sbjct: 424 ERAGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVAR 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +   +L S  +    I  E+ E+++ +      G  R T  + S+ D     + +I +
Sbjct: 484 IAEFLEILGSSTRLMEVIREELEEIEKNY------GDERRTDIQSSKRDLTI--EDLITE 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E   V IS+ G+ ++         +      +A   K+ D ++  L A T D IL  +  
Sbjct: 536 EDRVVTISHGGYAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNA 595

Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    + L+GR   G  I  L+ L+ ++ I +      YD    + + ++ G   
Sbjct: 596 GKVYWLKVFQIPLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGT-- 653

Query: 625 IVEESEIIANTRKGKTFLK-VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            V+++ +    R   + L+ +  EE   LV        AV   N  +++FS       S 
Sbjct: 654 -VKKTPLTQFARPRTSGLRAIDLEEDNHLV------GTAVTDGNSDVMLFS-------SE 699

Query: 684 GKGVRL--QSYKDGGISD--VICFKICEGLTWIDSA-----GRSYNRSENDLLGWLGKRG 734
           GK VR      +  G +   V   ++ EG   I        G+    SEN   G+ GKR 
Sbjct: 700 GKAVRFNENDVRSMGRTSRGVRGIRLAEGYEVISMVLPTEDGKVLTVSEN---GY-GKRT 755

Query: 735 GVGSLVPKGFPRSGK 749
            V     KG  R+GK
Sbjct: 756 KVDEYATKG--RAGK 768


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +LA+  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           Y L    +   S    G  +  L+ L+  + I T    D
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 363/603 (60%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALID+PE++I++L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDDPELTIDQLMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  G+ P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRLLNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I+    P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILGQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L S ++    I  E+ ++K  F  +     RRT     S+ D  T+   + E+E +
Sbjct: 489 LIRILTSPERLLEVIREELEKIKAEFGDA-----RRTEIV-ASQVD-LTIADLITEEERV 541

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S  L ++          +A   K+ D ++  L A++   +LL S+ GK 
Sbjct: 542 -VTISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 327/508 (64%), Gaps = 14/508 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +KSARIVG+V+GK HPH
Sbjct: 88  FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVY+++VR+AQ F  RYPLI   GNFG+IDGD AAA RYTEARM++VA L+L+G+ +
Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMRYTEARMSKVAALMLEGIKK 207

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E  +A +AL  N
Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALAKN 267

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEISI +++E++ GPDFPTG +I+ ++  I E+Y  G+G   VR+   +E +  G   I+
Sbjct: 268 PEISISEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLQNGKSRII 326

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  + +RI++  K   + P++++  
Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ RR  F +     R+ 
Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLRFDLNKAKDRMH 444

Query: 389 ILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  NIDE+I II++   +   +  + +RF L+E Q  AI+++RL  L  L   
Sbjct: 445 ILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTRFDLSEKQTKAIVDMRLGRLTGLAVD 504

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +  E+ NL AE E+I ++L +       I  E+ E+K  ++       RRT   +   A
Sbjct: 505 SMIEEMQNLAAEIERITNILANRDLLIELIIDELTEIKNKYA-----DERRTVIDKNISA 559

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL 533
             +   + +I K  I +  S +G+++ +
Sbjct: 560 --SINDEDLISKRDIVITTSTKGYVKRI 585


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 353/606 (58%), Gaps = 58/606 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    LALI++P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +R+R
Sbjct: 187 INEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRSR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 305 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L +A  NID IIA+I+    P    V                
Sbjct: 363 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGML 422

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I +E + LL  
Sbjct: 423 EKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEI 482

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+ EV   F      G  R T    +  D +   + +I +
Sbjct: 483 IAALLFILGSPQRLMEVIKEELEEVLANF------GDERRTVINANEVDMSL--EDLINE 534

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 535 EDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 594

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 595 GKMYWL 600


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/612 (39%), Positives = 378/612 (61%), Gaps = 32/612 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN    + +  + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+  
Sbjct: 3   SNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGD AAA
Sbjct: 63  RQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT +AE +L+ +D++ VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H++ E+    L L++N   S+E+++  I GPDFPTGGII   ++ I+E+Y+ GRG
Sbjct: 183 TNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIY-GKKGIIEAYKTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  +E+       IV+ E+PYQ  K+RLIE+IA+L+  K+I  + ++RDES  D
Sbjct: 242 RVKIRAKTHIEKKASKD-VIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRD 300

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  K  ++  ++++ ++F  + ME  F + M  +  G+ P++  L  +LK +L H
Sbjct: 301 GIRVVIELKRDAM-SEIVLNNLFKQTTMEATFGVIMLAID-GKEPKIFTLIELLKLFLNH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           R+ V+ RR+ F +Q    R  IL+GL IA  NIDE+I +IRN    +  +  ++SRF L+
Sbjct: 359 RKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RL  L  LE  +I+ EL  +LAE +++D++L S +     I  E+ E+K+
Sbjct: 419 EAQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--- 541
            F        +     E+    +    + +I  E + V I++RG+I+ + S + +     
Sbjct: 479 KF--------KCPRITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRVPSKTYEKQKRG 530

Query: 542 -----ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591
                A+   + D ++    ++T D ++ ++  G     K Y +P G   S    G+A+ 
Sbjct: 531 GKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEG---SRTAKGKAVV 587

Query: 592 LLIDLNHNQDIV 603
            LI L  ++ I+
Sbjct: 588 NLIQLGADEKIM 599


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/631 (35%), Positives = 373/631 (59%), Gaps = 22/631 (3%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA+   EA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVG
Sbjct: 15  AAHALYEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 74

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR G
Sbjct: 75  MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 134

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  ++RA WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES 
Sbjct: 135 RGSIKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 189

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW
Sbjct: 190 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 249

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           ++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT
Sbjct: 250 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLT 309

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   +
Sbjct: 310 DIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADAD 369

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        RR+   E   A KA  ++ ++  E ITVV+S +GWIR  K H+VD  +L+
Sbjct: 370 KFGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLN 423

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I  
Sbjct: 424 YKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQ 483

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHV 661
             + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +
Sbjct: 484 VVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEI 543

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG 716
             +    ++L+F I  +P++S+GKG   + + + K     +V+     + +G +    AG
Sbjct: 544 LAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAG 603

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            R      +DL  + G+RG  G+L+P+G  R
Sbjct: 604 KRKLGLKVSDLDNFRGERGRRGALLPRGLQR 634


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID     N E SIE +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I       KEI 
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +   + +I +E + + ++N G+I+ +   +         
Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +  +GR   G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651
             ++ I        Y+    L + + KG   +V+++ I       KT L   S  E+ + 
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653

Query: 652 LVVKVT 657
           + VKVT
Sbjct: 654 IEVKVT 659


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/605 (38%), Positives = 368/605 (60%), Gaps = 26/605 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K +++   ++  YL YA+S I  RAIPD+RDG KPVHRRI +AM E+  DF   +KKS
Sbjct: 2   DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD  AA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++    ++ ++++ + F+  Y+    EPVV P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C   LA++D+P+I++  L+ YI GPDFPT G I      I ++Y  GRG  ++RAR
Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGC-VGIKDAYETGRGTIKMRAR 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             VEE GR +  +++TE+PYQV K+RL+E+IAEL+  K+I  ++DIRDES  E +R+VL 
Sbjct: 241 VEVEESGRRNH-LIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLT 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            +    +P ++   ++  + +E+ F + M  +   + P+V+ L G+L  +L  RR V+ R
Sbjct: 300 LRQGD-EPRVIENQLYKHTALESSFGVIMLAVVDNK-PEVLNLKGVLNNFLDFRRLVIIR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ + +   ++R  IL+GL  A  ++DE+I++IR    P   K  ++ RF  ++ Q  AI
Sbjct: 358 RTQYELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMERFEFSDVQAQAI 417

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +I  E   ++ E E++  +L+S     +Q+  E  E+KE+  +  D
Sbjct: 418 LEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAA-LVDQVIRE--EIKELTDQYGD 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
           L  R+T    ++ A +  ++  +I  E + V IS  G+I        RS +      + +
Sbjct: 475 L--RKTEI--LAEAGELCIED-LIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKGRTGM 529

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
             +E D +     A T D +L+ +  G+ Y L    +  +     G+AI  L+ +  ++ 
Sbjct: 530 STREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDER 589

Query: 602 IVTAF 606
           I T  
Sbjct: 590 IQTVL 594


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/639 (38%), Positives = 370/639 (57%), Gaps = 59/639 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILTQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           Y L    +   S    G  +  L+ L+  + I T    D
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 364/617 (58%), Gaps = 31/617 (5%)

Query: 4   DNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           D   N + LV  N  +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M
Sbjct: 3   DETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+I
Sbjct: 63  LDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFGSI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDS AA RYTEAR+ ++AE +L  +++D +D++  +++   EP V P+K PNLL NG S
Sbjct: 123 DGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNGAS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN+ E+ +  +A IDN +I++ +L+++I  PDFPTGG+I      + +
Sbjct: 183 GIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIY-GYAGVQD 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RA+  +E        I+VTEIPYQV K+ +I++ A+L+  K+I  +  I
Sbjct: 242 AFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISAI 301

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   +++   R  +  +++ ++F  + ++T F +N   L  GR P ++ L  ++
Sbjct: 302 RDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVHGR-PMLLNLKDMI 360

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MV 418
             ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+ + P+     ++
Sbjct: 361 HHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLM 420

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +F L++ Q  AIL++ LR L  LE  +IK E   L+   E + S+L     +   I  E
Sbjct: 421 EKFGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEGLRMKIIKDE 480

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + EVKE F        RR+    V  A+   ++   I+ E I + IS+ G+++       
Sbjct: 481 LLEVKEKFGDE-----RRSQI--VHSAEDMRMED-FIDDEEIVITISHEGYVKRTPLTEY 532

Query: 539 DLSAL--------HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
            L A           KE D  +  + A   + +L  +  G     +A+ +P G   S   
Sbjct: 533 RLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTS--- 589

Query: 586 HGEAIQLLIDLNHNQDI 602
            G AIQ +I++   + I
Sbjct: 590 RGRAIQNIINIPKEEKI 606


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 265/722 (36%), Positives = 415/722 (57%), Gaps = 53/722 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ YA+S I  RA+PD+RDG KPV RRI++AM + GL  G    KSA +VGEVI K
Sbjct: 13  VKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSAGVVGEVIKK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD++VRLAQ +  RYPLI GQGNFG+IDGD AAAYRYTEAR++ +A  +L+
Sbjct: 73  YHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARLSPIALELLR 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF + ++    EP V P+ FPNLLANG++GIAVGMATSIP HN+ E+  A  A
Sbjct: 133 DIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNLGELINALAA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+PEI+++ +++++ GPDFPTGG +  +R  +  +Y  G+G  R+RAR   EE G G 
Sbjct: 193 MIDDPEITLDGVMQHLPGPDFPTGGRL--NRVGLKRAYETGKGSLRLRARVRTEERG-GR 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +VVTEIPYQV K+ LI +IA L+ AK++  +  +RDES  + +RIV+  K R  +PD+
Sbjct: 250 KMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIELK-RGANPDV 308

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +F  ++++T F +NM  +  G  P+V+PL  +++ +L HRREV+ RR+ F ++  +
Sbjct: 309 VLNQLFKQTNLQTSFTINMLAIVNGE-PRVLPLLAMMRAYLDHRREVVVRRTRFDLKKAE 367

Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  +L+GLLIA  ++DE+IA+I   R+  + K  ++ RF+L+E Q  AIL++RL+ L  
Sbjct: 368 DRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQRFALSEVQAQAILDMRLQRLTG 427

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++++E   L      + ++L    + W  +  E+  ++E F+       RRT   E
Sbjct: 428 LEREKLQAEYRELQETIAYLRAILADETRLWGVVKDELLAIREKFADE-----RRTLITE 482

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
            +        + +IE EP+ + ++  G++        R+     +   A   K+ D    
Sbjct: 483 FAEGFNP---EDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAGRTKDEDEATR 539

Query: 554 ALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGH---------GEAIQLLIDLNHN 599
              A   D +L  +  G+ Y      LP     +   H         GE I+ L+ L   
Sbjct: 540 VFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARGTHVKSFLPLEEGEEIKALLSLRSL 599

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG 658
            D    FV+ +   ++  ++  +   +  S +IA N  +G   + V         +  +G
Sbjct: 600 TD-PGYFVFATRKGVVKKTAIRDYQNLNASGLIAINLVEGDDLVDVR--------IAGSG 650

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDVICFKICEG-LTWIDS 714
             V +     K + F +D++    R  +GVR    K+G   +S ++  K  EG L  I S
Sbjct: 651 AQVVMATRGGKAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGDLLAISS 710

Query: 715 AG 716
            G
Sbjct: 711 HG 712


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/612 (38%), Positives = 361/612 (58%), Gaps = 51/612 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+NP++  E L++YI GPDFPTGG+++  R    ++Y  GRG   +RA+  V
Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRV 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  + VR+V+  K 
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELK- 312

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  +F  + M+T F  NM  L+ G+ P+ + L   L  ++  R EV+ RR++
Sbjct: 313 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLHRFLSLFIVFREEVVARRTA 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           F ++    R  +L GL +A  N+DE++A IR                             
Sbjct: 372 FELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALI 431

Query: 410 EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           +D   P      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S 
Sbjct: 432 DDPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASR 491

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+REV+++F+       RRT   + S        + +IE+E + V +++ G
Sbjct: 492 ERIMQIISDELREVRDLFAVP-----RRTQIVDWS---GDMEDEDLIEREDMVVTVTSGG 543

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     LS +  K+ D +     A+T  ++L  +T G  Y L    L
Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRL 603

Query: 581 -LSGR-GHGEAI 590
            L GR   G+AI
Sbjct: 604 PLGGRTSKGKAI 615


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 375/638 (58%), Gaps = 38/638 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  +KKSAR+V
Sbjct: 9   ISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGYKKSARVV 68

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE RM  +
Sbjct: 69  GEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKNI 128

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ V F   +++   EP V PS  PN+L NG SGIAVGMAT+IP  N+ E+
Sbjct: 129 AGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIPPQNLSEV 188

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +A+I+NPEI+I++++E+II PDFPT GII    E + ++Y  GRG   +RAR  VE
Sbjct: 189 VNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIY-GYEGVKQAYHTGRGKVVIRARAVVE 247

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              + G   I+VTE+PYQV K RLIEKI ELI  K+I  + DIRDES  D   ++    R
Sbjct: 248 VTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRLVIELKR 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++  ++  + M+  F + +  L  G VP+V+ L  +++ +L HR E++ RR+++
Sbjct: 308 DAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLNLKEMMEAYLKHRNEIVLRRTTY 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            + A +++  IL+GL I   N+DE+I+ IR   N    +  ++ +F LTE Q  A+L +R
Sbjct: 367 ELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEKFGLTELQSKAVLEMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  +E  +I+ + +  LA  E++  +L + +++   I  E+ +VK+++        R
Sbjct: 427 LQRLTGMERDKIEKDYNETLALIEELRFILANPEKRMQIIKDELLKVKQVYGDE-----R 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKE 547
           RT   E+   +     + MI +E + + I++  +I+                ++    + 
Sbjct: 482 RT---EIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVSGYRRQARGGKGVTGAQARH 538

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQD 601
            D ++    A T + IL  +  G     K Y +P AG    GR    ++  +++L   + 
Sbjct: 539 EDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAARGR----SLANIMELQPGEK 594

Query: 602 I---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           I   +    +D    +++ ++KG+   ++++EI A +R
Sbjct: 595 IKAYINVKTFDDPLFIIMATAKGS---IKKTEIEAFSR 629


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 359/612 (58%), Gaps = 65/612 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPT GII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L +  ++ ++LN     +N +   IR E+ ++  +  D   RRT   E SR D    +
Sbjct: 483 EILGQIAELTAILN----DFNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +
Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593

Query: 564 LLLSTDGKAYTL 575
           L  +  GK Y L
Sbjct: 594 LCFTNVGKVYRL 605


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILTQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ Q  A
Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645
           GE IQ +I++ H  D    +++  T   +V  +    F        AN R  G   L + 
Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692
            ++++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/639 (38%), Positives = 378/639 (59%), Gaps = 37/639 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSAR+V
Sbjct: 6   VNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSARVV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++Y+++VR+AQ F  RYPLI GQGNFG+IDGD AAA RYTE R++++
Sbjct: 66  GDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLSKI 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  ++++ VDF   Y+    EP V P K PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 126 AEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLNEL 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + LIDNP+ ++ +L+ Y+ GPDFPTGG IV  R  I  +Y  G+G   ++A+  +E
Sbjct: 186 AGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIV-GRAGIESAYLTGKGSIIMQAKSEIE 244

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E G  S  I+ +E+PYQV K++LIE +AE++   R+  + D+RDES  E +R+V+  K  
Sbjct: 245 E-GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT- 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +   + ++T + +N  VL  G +P+++ L   L++++ +R  V+ RR+ F
Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDG-MPRILSLKETLEQYIYYRSIVVERRTRF 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            + A ++R  IL GLLIA  NIDE+I II+    P      ++  F L+E Q  AIL++R
Sbjct: 362 ELDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIEAFLLSEEQAKAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGR 494
           L+ L  LE+ +I SE     AE EK+ + L        +I   I+ E+ E+ SK  D   
Sbjct: 422 LQRLTGLEQEKIVSE----AAELEKLIAHLRQILSSNLEILSIIKDELTELISKYGD--E 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFK 546
           RRT   E   AD     + +I++E + V I++ G+I+    ++  +             K
Sbjct: 476 RRTQIIE---ADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRMQRRGGRGVIGAETK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             + +     A T D +L  +  GKA     Y +PA   L     G++I  L+ L  ++ 
Sbjct: 533 TEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPA---LGRAARGKSIVNLLQLEPDER 589

Query: 602 IVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKG 638
           I  A    S     +++V+  GN  +    +  +N RKG
Sbjct: 590 IAGAIPVKSFQAGYIVLVTRSGN-IVKMPLQAFSNPRKG 627


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/663 (37%), Positives = 378/663 (57%), Gaps = 69/663 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   +
Sbjct: 15  MHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYT
Sbjct: 75  RKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP
Sbjct: 135 EARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LA I+N EISI++L+ YI GPDFPT  +I   R+ I E+Y+ GRG   V
Sbjct: 195 PHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYV 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE   +G   IVV EIPYQV K++LIEKIA+L+  K++  +  I D S +D   +
Sbjct: 254 RAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITDLSDKDGMRI 313

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    ++++ +++ L+ ++  F +N+  L  G+ P+++ L  +++ ++ HRREV+
Sbjct: 314 EIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQ-PKLLNLKQLIEAFVLHRREVV 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420
            RR+ + ++    R  IL+GL IA  N+D II +IRN   P P    R            
Sbjct: 373 TRRTVYELRKARERAHILEGLAIALANVDPIIELIRN--APNPESAKRALLAQAWELGHV 430

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL+LRL+ L  L   +I  E   
Sbjct: 431 SQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKK 490

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E+ +++E F+       RRT   E++ +      + 
Sbjct: 491 LLDVIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSADINLED 542

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL 
Sbjct: 543 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILC 602

Query: 566 LSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVS 618
            S+ G+ Y L    L  + RG  G  I  ++ L+ N+ I     VTA+  D   K +V++
Sbjct: 603 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYEED---KFVVMA 659

Query: 619 SKG 621
           + G
Sbjct: 660 TAG 662


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/607 (39%), Positives = 375/607 (61%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RY  I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + ++E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKIHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R +  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELK-REVMSEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSEILLENLIRDELKEIRNKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/784 (33%), Positives = 428/784 (54%), Gaps = 87/784 (11%)

Query: 9   SNTLVEENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           S+ L+E     +  ++  EE    +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G
Sbjct: 62  SSQLIESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELG 121

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD 
Sbjct: 122 ITHSVAYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDE 181

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAV
Sbjct: 182 AAAMRYTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAV 241

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN++E+ E  + L  NP+IS+++L +++  PDFPTG  I+ +   I ++Y  
Sbjct: 242 GMATKIPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGT-SGIRQAYET 300

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F +R++  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+
Sbjct: 301 GRGAFVLRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDET 360

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+F   +   P++++  ++  +D++  + +NM  L  G +P+V+ L  IL ++L
Sbjct: 361 NRKGIRVVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYL 419

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ EV+ R   F ++    R  IL G+ IA  NIDE+I IIR   ++ + +  +  RF 
Sbjct: 420 LHQEEVVTRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFD 479

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++
Sbjct: 480 LNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKI 539

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
            E ++       RRT     S      + + +I+++ + + ++   +I+ +      +  
Sbjct: 540 IESYADD-----RRTEIVHGSIG--QIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQN 592

Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  +A  +K+ D+LK  L A T   +L+L++  + + L    +  LS +  G    
Sbjct: 593 RGGTGSSTATTYKD-DNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFI 651

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKG------------------------- 621
            LI +  ++DIV+  V      D    L+ VS  G                         
Sbjct: 652 NLIPIEKDEDIVSLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKE 711

Query: 622 -----NAFI-VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL---- 671
                 AFI  EESEII     G++ ++  +++   L  K  G     +GEN  ++    
Sbjct: 712 NDELLTAFITTEESEIIIGASNGRS-VRFDNQDFRSLSRKSMGVKGITLGENEVVVGASS 770

Query: 672 ------IF-----------SIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWI 712
                 +F            ID+  + +R GKGV  L++ K G ++ + C K  E +  +
Sbjct: 771 TDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFISCVKGDEEILIL 830

Query: 713 DSAG 716
              G
Sbjct: 831 TKQG 834


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/652 (37%), Positives = 371/652 (56%), Gaps = 71/652 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  D+   +KKSARIVG+VIGK
Sbjct: 17  LKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTYKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGDSAAA RYTE RM+++A  +L 
Sbjct: 77  YHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMRYTEIRMSKIAYELLN 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V F   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN++E+    LA
Sbjct: 137 DLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIPPHNIKEVINGCLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ID+  I+++KL+E+I GPDFPT G+I   +  I ++Y+ G+G   +RA+  +E   +  
Sbjct: 197 FIDDQNITLKKLMEHIPGPDFPTAGLI-NGKRGIEKAYKTGKGKIYIRAKSIIEIQKKTK 255

Query: 266 WCIVVT-EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPD 323
              ++  E+PYQV K+R+I+ IA L+  K+I  +  +RDES  E +RIV+  K +    +
Sbjct: 256 KKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMRIVIEIK-KETKAE 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++ L+ +E  F +NM  L  G+ P+VM L  IL  ++ HRR+++ RRS F +  I
Sbjct: 315 IILNQLYSLTQLEISFGINMVALIHGQ-PKVMTLKEILNAFINHRRKIIMRRSLFELNKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN---------------------------------- 409
            +++ IL+GL+I+  NID II +I+                                   
Sbjct: 374 RKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQYTQILKKNAHSL 433

Query: 410 ---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              + K +P+   +F LT  Q+ AIL LRL+ L  LE  ++ SE   L      ++++L 
Sbjct: 434 TPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLFKTSNNLENILK 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     N I  +I +  E+     + G +R T   V+ +D  T    +I KE + + +S 
Sbjct: 494 N-----NNILTKIMK-DELIKIRDNFGDKRRTKINVNYSDINT--SDLINKENVVITLSY 545

Query: 527 RGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAY 573
            G+++   L S+           A+  KE D ++  L A+T D IL  S+ G     K Y
Sbjct: 546 SGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYWMKVY 605

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
            LP     S    G  I  L+ L+ N+ I TA +    Y  +  + + +SKG
Sbjct: 606 QLPEA---SRHARGRPIVNLLPLSSNERI-TAILPISEYKDSINIFMATSKG 653


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/662 (38%), Positives = 380/662 (57%), Gaps = 71/662 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D +RIV+
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ +++ L+ M+    +N+  L  G+ P+++ L  +++ ++ HRREV+ 
Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTLGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420
           RR+ F ++    R  IL+GL IA  N+D II +IR    P P    R             
Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRK--APNPENAKRELLTHPWQLGHVA 420

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + LTE Q  AIL+LRL+ L  L   +I  E   L
Sbjct: 421 DMLAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L    K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +
Sbjct: 481 LDAIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDL 532

Query: 515 IEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  
Sbjct: 533 IAQEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCF 592

Query: 567 STDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619
           S+ G+ Y L    L  + RG  G  I  ++ LN N+ I     V A+  D   K +V+++
Sbjct: 593 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMAT 649

Query: 620 KG 621
            G
Sbjct: 650 AG 651


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/681 (36%), Positives = 377/681 (55%), Gaps = 58/681 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 26  ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKPYRKSARAV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI+NP+++ E L+EYI GPDFPTGGI++  R    ++Y  GRG    RA+   E
Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRTGARKAYLEGRGSVITRAKTHTE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + I++TEIPYQV KS +I++IAE    K+I  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLRRFLTSFLDFREDVVIRRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR--------------- 420
            +     R  +L GL +A  N+DE++A IR + D P  +  +++R               
Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAAEILPFILLID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++  ++L S +
Sbjct: 443 DPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLAILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ E K +F+       RRT   + S        + +IE + + V ++  G+
Sbjct: 503 RIMQIITDELAECKTLFAVP-----RRTQIVDWS---GDMEDEDLIESQDMVVTVTETGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     +S    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 SGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNKLSDFTK 674

Query: 634 NTRKGKTFLKVSSE-EKMKLV 653
             R GK  +K   E E ++L+
Sbjct: 675 VMRNGKIAMKFEGENEGVQLI 695


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ Q  A
Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645
           GE IQ +I++ H  D    +++  T   +V  +    F        AN R  G   L + 
Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692
            ++++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 340/587 (57%), Gaps = 46/587 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR VG+V+GK HPH
Sbjct: 11  YLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGKYHPH 70

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + +  +L  ++ 
Sbjct: 71  GDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLDDIER 130

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+ +A LA+I N
Sbjct: 131 DTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLAMIAN 190

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P I +++L++ I GPDFPTGGII+  R  I  +Y  GRG   VRAR  +EE+ +    I+
Sbjct: 191 PAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIEEIRKDRQAII 249

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R   PD+++  +
Sbjct: 250 ITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVLNQL 309

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G+ P+ M L  IL+ +L  R EV+ RR+ F +     R  +
Sbjct: 310 YRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFDLNKARDRGHL 368

Query: 390 LKGLLIAYLNIDEIIAIIRN----------------------------EDKPKPVMVSRF 421
           L GL++A  NIDE+IA+IR                              D+   ++  + 
Sbjct: 369 LVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVIIDGKV 428

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q   IL LRL+ L  LE  +I+ EL  +    +KI  LL   + +  ++   +RE
Sbjct: 429 RLTEAQARGILELRLQRLTGLEREKIQGELGEV---AQKIGELLAIIESRPRRMEV-MRE 484

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
             E+ +   ++   R T  E+S A      +++IE   + V I+  G+I        RS 
Sbjct: 485 --ELLAARAEVATPRVT--EISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQ 540

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                  +A   +  D +  + +AHT   ++  S+ GKAY +   +L
Sbjct: 541 NRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHL 587


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/673 (36%), Positives = 375/673 (55%), Gaps = 54/673 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +MSE G  +   ++KS
Sbjct: 16  DIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSENGYSWNKPYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGDQSVYD+LVR+ Q F  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 76  ARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++++ +L  ++ D VDF+D Y+  + EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LA ++NP +SIE+L+E+I GPDFPTGG+I+  R  I  +Y  GRG   VR +
Sbjct: 196 LGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIM-GRAGIRAAYLKGRGSVVVRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE + +    ++VTEIPYQV K+ L E+IAEL+  KR+  + D+RDES      V+  
Sbjct: 255 VHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDVRDESDRSGYRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + +++ F  NM  L+ GR  Q   LD  ++ +   R  V+ RR
Sbjct: 315 LKRDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLD-FIQAFTQFRETVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F +     R  +L GL  A  NIDE+I +IR+   P   +  ++SR            
Sbjct: 374 TKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMSRDWPADDIAPLLL 433

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+ +Q  AIL LRL+ L  L   +I  EL  L  +     ++L+
Sbjct: 434 LIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKALADKIRDYLNILS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + +  E+  +KE F+       RRT   +V   +     + +I+KE + V +S+
Sbjct: 494 SRARVISIVRDELTAIKEEFATP-----RRTEILDV---EGEVDDEDLIQKEDMVVTVSH 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           RG+I        R+ +      S +  ++ D +     A+T   +L LS+ G AY +   
Sbjct: 546 RGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAYKMKVW 605

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEI 631
            L LS  +  G+A+  L+ L  ++ I +         +S   +L  +  GN    E ++ 
Sbjct: 606 RLPLSAPQARGKALINLLPLQQDETITSILPLPEERDESGVFILFATRSGNVRRNELADF 665

Query: 632 IANTRKGKTFLKV 644
               + GK  +K+
Sbjct: 666 AEVRQNGKIAMKL 678


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 348/604 (57%), Gaps = 55/604 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG++DGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ Q A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IP
Sbjct: 121 EARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A++  IDNPE+++E+L+  I GPDFPTGG+I+     I  ++  GRG   +
Sbjct: 181 SHNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIM-GDAGIKSAFATGRGTIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +EE+  G   I++ EIPYQ  K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 QGKTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++  +++  +  L+ + T F +N  VL   R P+VM L  I++ ++A R+EVL
Sbjct: 300 AIELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSR-PRVMSLIEIIETFVAFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------- 410
            RR+ +R++ +  R  +  G+ IA LNIDEI+AIIR                        
Sbjct: 359 VRRTRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVR 418

Query: 411 -------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                  D    +   R+ LT  Q+ AIL +RL+ L  LE+ +++ EL +++A   +   
Sbjct: 419 GMIELVSDSTGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRR----RTTFCEVSRADKATLQQAMIEKEP 519
           +L++     + + C +RE         D+ RR    R T  E S+ D     +++I +E 
Sbjct: 479 ILSTD----SLLMCMVRE------GLLDVKRRVATPRRTTIEESKGDIDA--ESLIPREE 526

Query: 520 ITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V ++  G+++ +K  +            A   KE D         T   +L  S  GK
Sbjct: 527 MVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGK 586

Query: 572 AYTL 575
            Y L
Sbjct: 587 VYKL 590


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/711 (34%), Positives = 407/711 (57%), Gaps = 48/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIIDYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     ++R  IL+GLLIA  ++D++I+IIRN +     +  ++SRF+L+E Q  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSRFNLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L    +    I  E+ E+K    K 
Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMDEIKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L              + 
Sbjct: 477 VDPRRTELMVGEVL----SIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +  +T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q +I    N         ++   L  V+ +G     +ESE     + G   L +  
Sbjct: 592 GETVQTIISEKGND--------ETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKE 643

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V++  GD   ++G      + F+   +  MSR   GVR  + ++G
Sbjct: 644 SDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRGVNLREG 694


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/664 (37%), Positives = 383/664 (57%), Gaps = 69/664 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419
           F ++    R  IL+G  +A  NID +IA+I+    P   K  ++S               
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERA 428

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                              ++ L+  Q  AIL LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +        RRT   + +R D  TL   MI +E  
Sbjct: 489 LIRILNSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D +   L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCKLLVVSSK 620
           Y L    +   S    G  +  L+ L+ ++ I T           F++ +T K  V  + 
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660

Query: 621 GNAF 624
             +F
Sbjct: 661 LESF 664


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 406/701 (57%), Gaps = 30/701 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE  +   L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ M E+G+      K
Sbjct: 11  EEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDKPHK 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DGDS AA RYTE
Sbjct: 71  KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +++RD Y+  + EP V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 131 ARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y  GRG   VR
Sbjct: 191 HHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVL-GKSGIRRAYETGRGSITVR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE+  G   I++TE+PY V K+RL+E+I++L   K+I  +  + DES      V+
Sbjct: 250 GRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGMRVV 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ +++ F  NM  + +G+ P+++ L  IL+ +L H+ EV+ 
Sbjct: 310 IEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAI-VGQEPKILSLKEILRHYLNHQEEVIR 368

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RRS F  +  + R  IL+GL +A  +ID I+AI+R+    D  K   ++ + L++ Q  A
Sbjct: 369 RRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYGLSDKQAQA 428

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I +E  +L A  ++++ +L S ++++  I  E+ E+++ F    
Sbjct: 429 ILDMRMVRLTGLEREKIDAEYADLQALIKELNEILASEERRYEIIEQELLEIQQKFDNP- 487

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
               RRT   E+   +  +L+ + +IE+E + + ++  G+I+ L +            + 
Sbjct: 488 ----RRT---ELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRLANSEFKTQRRGGRGVQ 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
            +   + D ++  +   T D +L  +  GK Y      +   S    G  +  L++++  
Sbjct: 541 GMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDST 600

Query: 600 ---QDIVTAFVYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
              Q I++    D T + L  ++ +G    V+ S+       G   +++  ++++  VV 
Sbjct: 601 EKIQAIISVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLREDDQLIRVVV 660

Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            +G    ++G  +   + F  +++  M R   GVR  S +D
Sbjct: 661 TSGQDGIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRD 701


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID     N E S+E +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I       KEI 
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +   + +I +E + + ++N G+I+ +   +         
Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +  +GR   G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651
             ++ I        Y+    L + + KG   +V+++ I       KT L   S  E+ + 
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653

Query: 652 LVVKVT 657
           + VKVT
Sbjct: 654 IEVKVT 659


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 360/612 (58%), Gaps = 51/612 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  ++++ V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP++  E L++YI GPDFPTGG+++  R    ++Y  GRG   +RA+   
Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRT 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  + VR+V+  K 
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELK- 312

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  ++  + M+T F  NM  L+ G+ P+ + L   L  ++  R EV+ RR++
Sbjct: 313 RDATAEVVLNQLYRFTPMQTYFGCNMLALNGGK-PEQLTLHRFLSLFITFREEVVARRTA 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409
           + ++    R  +L GL +A  N+DE++A IR                             
Sbjct: 372 YDLRKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALI 431

Query: 410 EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           +D   P      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S 
Sbjct: 432 DDPSHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASR 491

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+REV+E+F+       RRT   + S        + +IE+E + V +++ G
Sbjct: 492 ERIMQIISDELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGG 543

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     LS +  K+ D +     A+T  ++L  +T G  Y L    L
Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRL 603

Query: 581 -LSGR-GHGEAI 590
            L GR   G+AI
Sbjct: 604 PLGGRTSKGKAI 615


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/635 (39%), Positives = 367/635 (57%), Gaps = 60/635 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            R                     + LTE Q  AIL+LRL+ L  LE  ++  E   LL  
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L + ++    I  E+  +KE ++       RRT   E++        + +I +
Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDV-----RRT---EITANTSDINIEDLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++        + +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602
           G+ Y +    L  + RG  G  I  L+ L  N+ I
Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 360/584 (61%), Gaps = 35/584 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  ++++  ++  YL YA+S I  RA+PD+RDG KPVHRR ++AM  +       F KS
Sbjct: 17  NIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALYAMYSLNNYHNKPFLKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VY++LVR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R
Sbjct: 77  ARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFGSIDGDAAAAMRYTEIR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++E +L+ +D+D VD++  Y++   EP V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 137 MKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNGSSGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  A   LIDN ++++ +L+++I GPDFPT G I    E I  +Y  GRG  ++RA+
Sbjct: 197 LTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSI-HGTEGIKSAYHTGRGIIQIRAK 255

Query: 256 WCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
             +E  G+     IV+TE+PYQV K++LIEKIA+L+  K I  + DIRDES+ E +R+V+
Sbjct: 256 VDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGISDIRDESSREGIRVVI 315

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   +   +++  ++  + ++  F +    +S G  P+VM L  +L+ ++ HRREV+ 
Sbjct: 316 DLKKGEI-ASVIVNRLYKATQLQVSFGIIFLSISNGS-PKVMNLKEMLECFIDHRREVVI 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL +A  NIDE++ I++  + P   K  ++SRFSL+E Q  A
Sbjct: 374 RRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKLISRFSLSEIQSQA 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I ++ + ++ E  +++ +L S       I  E +E+ E +    
Sbjct: 434 ILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSEDLIRGIIKTEFQEINENYGDE- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT    V++AD+  ++  +++ E + V I+++G+I+ +   ++D      + G  
Sbjct: 493 ----RRTAI--VAKADEIQIED-LVKNEDVLVTITHKGYIKRM---TMDTYRTQKRGGKG 542

Query: 551 LKIA-----------LHAHTTDRILLLSTDG-----KAYTLPAG 578
           +K A             A+T   IL  +  G     K Y +P G
Sbjct: 543 VKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEG 586


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/587 (39%), Positives = 340/587 (57%), Gaps = 46/587 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR VG+V+GK HPH
Sbjct: 5   YLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + +  +L  ++ 
Sbjct: 65  GDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLDDIER 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+ +A LA+I N
Sbjct: 125 DTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLAMIAN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P I +++L++ I GPDFPTGGII+  R  I  +Y  GRG   VRAR  +EE+ +    I+
Sbjct: 185 PAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIEEIRKDRQAII 243

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R   PD+++  +
Sbjct: 244 ITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVLNQL 303

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G+ P+ M L  IL+ +L  R EV+ RR+ F +     R  +
Sbjct: 304 YRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFDLNKARDRGHL 362

Query: 390 LKGLLIAYLNIDEIIAIIRN----------------------------EDKPKPVMVSRF 421
           L GL++A  NIDE+IA+IR                              D+   ++  + 
Sbjct: 363 LVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVIIDGKV 422

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q   IL LRL+ L  LE  +I+ EL  +    +KI  LL   + +  ++   +RE
Sbjct: 423 RLTEAQARGILELRLQRLTGLEREKIQGELGEV---AQKIGELLAIIESRPRRMEV-MRE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
             E+ +   ++   R T  E+S A      +++IE   + V I+  G+I        RS 
Sbjct: 479 --ELLAARAEVATPRVT--EISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQ 534

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                  +A   +  D +  + +AHT   ++  S+ GKAY +   +L
Sbjct: 535 NRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHL 581


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/701 (36%), Positives = 409/701 (58%), Gaps = 31/701 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPV RR+++ M  +G+    A+KKSAR+VGEV+GK HPH
Sbjct: 22  YLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKSARVVGEVMGKYHPH 81

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VRLAQP+  RYPL+ GQGNFG++DGD AAA RYTEAR  ++ EL+LQ +DE
Sbjct: 82  GDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEARFAELGELMLQDIDE 141

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VD+   ++E   EP+  PS  PNLL NG++GIAVGMAT++P HN+ E+ +A   LID+
Sbjct: 142 DTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHNLGEVIDALCCLIDH 201

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE  + +L+ Y+ GPDFPTGGII+  RE IV++YR GRG   VR R CV E G+    +V
Sbjct: 202 PEAELGELMNYLPGPDFPTGGIIM-GREGIVDAYRTGRGKIIVRGR-CVVEEGKRRTSVV 259

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           +TEIPY V K+ LIE IA+ +    I  + D+RDES  + +RIVL   NR  DP+L+   
Sbjct: 260 ITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVL-DLNRDGDPELVQRQ 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + M++ F + +N+  + + P  + L  +L+ +L +RR+V+ RR++FR+     R  
Sbjct: 319 LYNRTLMQSTFGV-INLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRTAFRLAKAQEREH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           I++GL  A   IDE+I IIR     +     +  +   +E Q  AIL++RL+ L  LE  
Sbjct: 378 IIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAILDMRLQRLTGLERD 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++ +E+  LLA+  +   +L   K     I  E+ E++  F      G +R T  ++   
Sbjct: 438 KLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKF------GDKRRTEIQLHVE 491

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHA 557
             +   + ++ +E I + +S  G++R   LK ++V           +  E D +   +  
Sbjct: 492 STSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVT 551

Query: 558 HTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF--VYDSTCK 613
            T + +LL ++ G+ + +  G+++  +  G G  ++  I L+  + +V       D+   
Sbjct: 552 TTHNDVLLFTSRGRVFAI-KGHMVPETKSGKGRKVEQFISLSEGETVVEILGRFPDNCST 610

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           +++++ +G A  +++SE+   TR G+  + +   + +  +    G D + +V    + L 
Sbjct: 611 VVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLR 670

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            S D+I  M R  +GV+  + K G   ++I  ++  G + I
Sbjct: 671 ISEDEIRTMGRSARGVK--AMKLGKDDEIISCEVIAGDSRI 709


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/603 (39%), Positives = 360/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL+DN E+++++L++YI GPDFPT GII   R  I+E+YR GRG   VRAR  VE
Sbjct: 191 IDGCLALMDNAELTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYVRARVEVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M++ F +N+  L  G+ P+ M L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I++   P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +LA   +
Sbjct: 429 GADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILALIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L + ++    I  E+ +VK  F  +     RRT     SR D  T+   + E+E +
Sbjct: 489 LIRILTNPERLMEVIREELEKVKAEFGDA-----RRTEII-ASRQD-LTIADLITEEERV 541

Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S    + +         SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 542 -VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/611 (39%), Positives = 351/611 (57%), Gaps = 51/611 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR V
Sbjct: 26  VSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARAV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +++D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ EI
Sbjct: 146 SASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEI 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI NP+++ E+L++Y+  PDFPTGGII+  R    ++Y  GRG   +RA+  VE
Sbjct: 206 IDATLALITNPDLTSEELIQYVPAPDFPTGGIIL-GRTGARKAYIEGRGSVVIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + IV+ EIPYQV K+ LIEKIAE +  KRI  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ GR P+ + L   L  +L  R EV+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFLDFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  +L GL +A  N+DEI+A IR    P      +M  R              
Sbjct: 383 ELRKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L  L   ++  EL  L A   +   +L S +
Sbjct: 443 DPTHRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E++EVK+ F+       RR+   + S        + +IE E + V ++  G+
Sbjct: 503 RIMGIITDELQEVKDKFAVP-----RRSEIIDWS---GDMEDEDLIESEDMVVTVTATGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     LS +  KE D +     A+T  ++L  +T G  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAI 590
            G     G+AI
Sbjct: 615 QGGRTAKGKAI 625


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/554 (41%), Positives = 336/554 (60%), Gaps = 50/554 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F      G  R T    + AD     + +I +
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536

Query: 518 EPITVVISNRGWIR 531
           E + V +S++G+++
Sbjct: 537 EDVVVTLSHQGYVK 550


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 245/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID     N E S+E +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I       KEI 
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +   + +I +E + + ++N G+I+ +   +         
Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +  +GR   G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651
             ++ I        Y+    L + + KG   +V+++ I       KT L   S  E+ + 
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653

Query: 652 LVVKVT 657
           + VKVT
Sbjct: 654 IEVKVT 659


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 270/800 (33%), Positives = 427/800 (53%), Gaps = 77/800 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P + I  ++ +I GPDFPT GI+  SR  I E+Y  GRG   +
Sbjct: 184 PHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSR-GIQEAYLTGRGRIFL 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE +   G   I+VTE+PY V K+RL+EKI EL+  K+I  +  +RDES ++   
Sbjct: 243 RARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R+  P++++  +++ + ++T F +NM  L  G+ PQV+ L   L+ +L HR+EV
Sbjct: 303 MVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQ-PQVLNLKLALEAFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ F ++    R  +L+GL IA  NID +IA+I+    P                  
Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421

Query: 417 -MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            M+ R                     + L+  Q  AIL++RL  L  LE+ +I  E   +
Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++  +L + ++    I  E+ E+++ +      G  R T  + +  D     + +
Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQY------GELRRTEIQYNHVDLRL--EDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           S+ G     K Y LP G   +    G+ I  L+ L   + I T      ++    + +V+
Sbjct: 594 SSRGKVYWKKVYELPQGTRTA---RGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVT 650

Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFS 674
           + G   +V+++ +   +R +    + +   E  +LV     D    + +     K++ FS
Sbjct: 651 ASG---VVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFS 707

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
             ++  M R  +GV+           VI   I    T + +    Y +        L  R
Sbjct: 708 EQKVRPMGRTARGVKGMELPPE--HRVIALIIARNGTILTATELGYGKRTAIAEYRLQGR 765

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG G +  +  PR+G+ + +
Sbjct: 766 GGQGIISIQTTPRNGQVVGA 785


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 6   ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPEKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T+IP 
Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG   +R
Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D   ++
Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+  V+ 
Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ Q  A
Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F    
Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              +RRT   E+   +  +L+ + +IE+E + + +S+ G+++ L +            + 
Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586
            ++  + D ++  +   T D +L  +  GK Y                +P  NLL G G 
Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645
           GE IQ +I++ H  D    +++  T   +V  +    F        AN R  G   L + 
Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692
            ++++  V+  +G    ++G +    + F    +  M R     +G+RL+ +
Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 284/793 (35%), Positives = 423/793 (53%), Gaps = 87/793 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E   D+  A+KKSA
Sbjct: 8   ITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+ AA RYTE RM
Sbjct: 68  RIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A   L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN+
Sbjct: 128 EKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ + +LALIDN  I+I++L+EYI GPDFPT   I   R  IV++Y+ GRG   +RAR 
Sbjct: 188 SEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFI-NGRAGIVDAYKTGRGKIYMRARH 246

Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E + +G+   IV TEIPYQ+ K+R+IEKIAEL+  K++  + ++RDES +D   ++  
Sbjct: 247 HIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D+++ ++F+ + ++  F +NM  L  GR P+++ L  +L+ ++ HRREV+ RR
Sbjct: 307 LRRGENADVVVNNLFIQTQLQGVFGINMVALVDGR-PELLNLKQVLECFVKHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVS 419
           + F ++    R  +L+GL +A  NI+EII +IR      E K K V           M+ 
Sbjct: 366 TIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSAMLE 425

Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           R                     + L+  Q  AIL+LRL  L  LE  ++++E   L+   
Sbjct: 426 RAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALIELI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+ E+K  F      G  R T    SR D       +I++ 
Sbjct: 486 AELLHILASPARLMEVIREELEEIKAQF------GDVRRTEILTSRQDLTVAD--LIDEA 537

Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           P+ V ISN G+ +S  L+ +          S+   K+ D +   L   + D I+L S  G
Sbjct: 538 PMVVTISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFG 597

Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDL-----NHNQDIVTAFVYDS 610
           K Y L               P  NLL     GE+I  L+ L     +  +D  T    D+
Sbjct: 598 KVYWLRVFEIPVASRNAKGRPIVNLLP-LSEGESISALLPLVAPEKSDAEDAETEVSEDA 656

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV-VKVT--GDHVAVVGE 666
              + + ++ G    V+++ +    R   T  + +S +E  +LV V +T   D + +V  
Sbjct: 657 ESFIFMATANGT---VKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSS 713

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN-RSEN 724
             K + F    +  M R   GVR       G   V      EG++ + +    Y  R+  
Sbjct: 714 TGKTIRFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAI 773

Query: 725 DLLGWLGKRGGVG 737
           D     G RGG G
Sbjct: 774 DDFPVYG-RGGQG 785


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/683 (37%), Positives = 390/683 (57%), Gaps = 26/683 (3%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL    ++KKSAR+VGE +GK HPH
Sbjct: 23  YLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARVVGETMGKYHPH 82

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++YD++VRLAQ F  RY L+ GQGNFG+IDGDSAAA RYTEAR+ ++ EL+LQ +DE
Sbjct: 83  GDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEARLQELGELMLQDIDE 142

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID- 208
           D V++   ++E   EP+V PS+ PNLL NG++GIAVGMAT++P HN+ E+ +A   LI+ 
Sbjct: 143 DTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLGEVVDAICYLIEA 202

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +    +L+  + GPDFPTGG+I+  ++ I+++YR GRG   V+    VEE  RG   +
Sbjct: 203 GDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRLVVQGLVHVEEGKRGKSNV 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+TEIPY V K+ +IE IA  +  K I  + DIRDES      V+   +R +DPDL++  
Sbjct: 262 VITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLEVSRDVDPDLVIRQ 321

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  S ++  F +    L  GR P  + L  +L  +L HRR V+ RR+ FR++  + R  
Sbjct: 322 LYRRSQLQNTFGVINLALVDGR-PVELSLTDMLNVFLGHRRTVVRRRTEFRLKKAEARAH 380

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL+ A   ID +IA+IR  D     K  +V+    +E Q  AIL+++L+ L  LE  
Sbjct: 381 ILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAILDMKLQRLTGLERD 440

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E   LLA+ ++  S+L+S K     I  E+  +K  +        RRT    V R 
Sbjct: 441 KLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGDD-----RRTKI--VDRV 493

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHA 557
            +    + +I +E I V++S  G++R +      L A           +E D + +   +
Sbjct: 494 GQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREEDEVSLMGVS 553

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
            T D I L +T G+ + +    +   R G G+ I   I L +++ +V+        +  L
Sbjct: 554 TTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERVVSMKTRRGQESGFL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
             ++ +G A  +  SE+   TR G+  + +   +++  ++  +G D + +V    + L  
Sbjct: 614 FFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRV 673

Query: 674 SIDQIPEMSR-GKGVRLQSYKDG 695
           S D+   M R  +GV+    KDG
Sbjct: 674 SEDEFRPMGRSARGVKAMRLKDG 696


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 265/784 (33%), Positives = 428/784 (54%), Gaps = 87/784 (11%)

Query: 9   SNTLVEENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           S+ L+E     +  ++  EE    +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G
Sbjct: 62  SSQLIESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELG 121

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD 
Sbjct: 122 ITHSVAYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDE 181

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAV
Sbjct: 182 AAAMRYTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAV 241

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN++E+ E  + L  NP+IS+++L +++  PDFPTG  I+ +   I ++Y  
Sbjct: 242 GMATKIPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGT-SGIRQAYET 300

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F +R++  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+
Sbjct: 301 GRGAFVLRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDET 360

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+F   +   P++++  ++  +D++  + +NM  L  G +P+V+ L  IL ++L
Sbjct: 361 NRKGIRVVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYL 419

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ EV+ R   F ++    R  IL G+ IA  NIDE+I IIR   ++ + +  +  RF 
Sbjct: 420 LHQEEVVTRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFD 479

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++
Sbjct: 480 LNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKI 539

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
            E ++       RRT     S      + + +I+++ + + ++   +I+ +      +  
Sbjct: 540 IESYADD-----RRTEIVHGSIG--QIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQN 592

Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  +A  +K+ D+LK  L A T   +L+L++  + + L    +  LS +  G    
Sbjct: 593 RGGTGSSTATTYKD-DNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFI 651

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKG------------------------- 621
            LI +  ++DI++  V      D    L+ VS  G                         
Sbjct: 652 NLIPIEKDEDIISLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKE 711

Query: 622 -----NAFI-VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL---- 671
                 AFI  EESEII     G++ ++  +++   L  K  G     +GEN  ++    
Sbjct: 712 NDELLTAFITTEESEIIIGASNGRS-VRFDNQDFRSLSRKSMGVKGITLGENEVVVGASS 770

Query: 672 ------IF-----------SIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWI 712
                 +F            ID+  + +R GKGV  L++ K G ++ + C K  E +  +
Sbjct: 771 TDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFISCVKGDEEILIL 830

Query: 713 DSAG 716
              G
Sbjct: 831 TKQG 834


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 257/773 (33%), Positives = 431/773 (55%), Gaps = 54/773 (6%)

Query: 15  ENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           EN K + +    E R  Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+GL     +
Sbjct: 5   ENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNRPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD +VYD++VR+AQP+  RY ++ GQGNFG+IDGDS AA RYT
Sbjct: 65  KKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ ++AE +L  ++++ VDF+  +++   EP V P+K PNLL NG SGIAVGMAT++ 
Sbjct: 125 EARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATNMA 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+     A IDN +I++ +L+E+I  PDFPTG  I    + +  ++  GRG   +
Sbjct: 185 PHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIY-GYQGVKAAFETGRGRIVM 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   ++VTEIPY V K+ +IEK A L+  K+I  + DIRDES  +   +
Sbjct: 244 RAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++   +   P++++ +++  + ++T F +N   L  GR P+ + L  ++K ++ HR +V+
Sbjct: 304 VYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGR-PETLNLKDMIKHYVEHRHDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ + ++   +R  IL+G LIA  N+DE+I +IR    P+     ++ +F L+E Q  
Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDKFKLSEIQAK 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E + +    E ++S+L     + N I  E++E+++ +   
Sbjct: 423 AILDMRLQRLTGLEREKIIQEYEEIKKLIEYLESVLADEGLRMNIIKDEMQEIQDRYGDE 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLS 541
                RRT   E+  + +    + MI  E + + +S++G+I R+L +         V   
Sbjct: 483 -----RRT---EIIHSAEEFTDEDMIPNEDVVITLSHQGYIKRTLLNEYKTQGRGGVGSK 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
               K+ D  ++   A T + +L+ +  G     K Y LP G+  S    G AIQ LI++
Sbjct: 535 GAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEGSKTS---KGRAIQNLINI 591

Query: 597 NHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKV 644
             ++D V A +         Y +   L++ + KG    ++++ + A +R    G   + +
Sbjct: 592 -ESEDSVRAVINVENLDDADYINNNFLVMCTEKGT---IKKTTLEAYSRPRANGINAISI 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    GD ++ +   + + + F    +  M R   GVR  + KDG   D++ 
Sbjct: 648 NEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDG--KDIVV 705

Query: 703 FKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    E    +  + + Y +  +     + KRGG G        ++G+ ++
Sbjct: 706 EMVAITRENANLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTEKTGELVA 758


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 261/693 (37%), Positives = 406/693 (58%), Gaps = 38/693 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++E ++ Y++S I  RA+PD+RDG KPVHRR+++AM+E+GL  G A+KKSA +VG+V+GK
Sbjct: 19  VKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKKSATVVGDVLGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+LVR+ Q F  RYPL+ GQGNFG++DGD+AAAYRYTEAR+T++A  +L 
Sbjct: 79  YHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEARLTRMAVEMLT 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++   EP V P+ FPNLL NG++GIAVGMAT+IP HN++E+  A +A
Sbjct: 139 DIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPHNLREVISAVIA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264
           LIDNPE+    L + + GPDFPTGG I   R  I +    GRG   +RAR  +EE    G
Sbjct: 199 LIDNPELDGPALRKLVKGPDFPTGGYIY-GRAGIADYQDTGRGRIIMRARAVIEEKESSG 257

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323
              IVVTE+PYQV K++L+  IAEL+  +++  +  +RDES +D VR+V+  K  ++ P 
Sbjct: 258 KSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVVIELKRDAI-PR 316

Query: 324 LLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +++  ++  + M++ F + M  L     +   VP+V+ L   L+ ++AHR EV+ RR+ F
Sbjct: 317 VVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHRHEVIVRRTQF 376

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLR 435
            +     R  IL+GL IA  NIDE+IA+IR   D P     + SRF L+E Q +AILN+R
Sbjct: 377 DLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSRFGLSERQAEAILNMR 436

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +++ EL  + A   ++  +L S  ++ + +  E+ +V E +        R
Sbjct: 437 LAKLTGLERDKLEEELVEVRAFILEMRGILESRDRRMSILKGELIQVAETYGDE-----R 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHS----VDLSALHFKE 547
           RT    VS   + +++  +I +E + V I++ G+I+    SL +         ++   KE
Sbjct: 492 RTEI--VSDEGEFSIED-LIAEEEMVVTITHGGYIKRTPLSLYNRQGRGGRGKASADLKE 548

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHN---QDI 602
            D ++    A T   +L+ + DG+ + L    L  +GR   G+ I  LI++  +   + I
Sbjct: 549 HDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNTRGKPIVNLINVTPDTRIRAI 608

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
           V    +  T  LL  +  G       S+       G   +K+  ++++  V   +G++  
Sbjct: 609 VVTKEFSDTEFLLFCTRNGTVKKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDV 668

Query: 663 VVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
           V+     L + F    + EM R     KG+ L+
Sbjct: 669 VLATRHGLSVRFHESDVREMGRDTTGVKGIELR 701


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/792 (34%), Positives = 432/792 (54%), Gaps = 74/792 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++HAM+ +  D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEVRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F D Y+  +  P V P++ P+LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI+NPEI ++ L++YI GPDFPT  +I   R+ IV++YR GRG  ++RAR   E
Sbjct: 191 ITGCLALIENPEIDVDGLMQYITGPDFPTAALI-NGRDGIVDAYRTGRGRIQMRARHHFE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   I+ TEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   ++    R
Sbjct: 250 MDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVVELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ ++F  + ++T F +N   L  G+ P+++ L  +L+ ++ HRREV+ RR+ +
Sbjct: 310 GEVPEVVLNNLFAQTQLQTVFGINTVALVDGQ-PKILNLKDMLEAFVRHRREVVTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------NEDK-------PKPVMV------ 418
            ++    R  IL+GL +A  NID +IA I+        +DK       P  VM       
Sbjct: 369 DLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEMLERAG 428

Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+  Q  AIL++RL+ L  LE  ++  E    + E  + 
Sbjct: 429 PDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDEIAEY 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L S ++    I  E+  +K+ +      GR      E+    +    + +I +E + 
Sbjct: 489 LQILASHERLMEVIREELESIKDEYGD----GR----LTEIVETRRHLTMEDLIAEEDMV 540

Query: 522 VVISNRGW--IRSLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+  I+ +  +          SA   K+ D ++  L A+T D IL  S  GK Y
Sbjct: 541 VTLSHGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVY 600

Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L   ++   S +  G  I  L+ L  ++ I T      Y     + + +SKG    V++
Sbjct: 601 WLKVYDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKGT---VKK 657

Query: 629 SEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR- 683
           +++ A +R +    + +  EE   L+     D    V ++ +  K + F+   +  M R 
Sbjct: 658 TDLTAFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN-RSENDLLGWLGKRGGVGSLVP 741
            +GVR    +D     V+   I  EG T + ++   Y  R++ D     G RG  G +  
Sbjct: 718 ARGVRGIKMQDD--QKVVSLMIPKEGATVLTASEHGYGKRTDVDEFPTKG-RGTQGVIGM 774

Query: 742 KGFPRSGKFLSS 753
               R+GK + +
Sbjct: 775 VTNDRNGKLVGA 786


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/750 (34%), Positives = 408/750 (54%), Gaps = 35/750 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ YL Y++S I  RA+PD+RDG KPVHRR++ AM+++   F   FKKSAR+V
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE RMT+ 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE  L  ++++ VDF  TY+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C     ++DNP IS+ +L+  I GPDFPT G I+  ++ I+++Y  GRG  ++R+R  VE
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFIL-GKQGIIDAYSTGRGIIKIRSRAFVE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       I+V+EIPYQV K +L+EKIA  +  K+I  + +IRDES  D   ++    R 
Sbjct: 249 KFAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRD 308

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
               +++  ++  + ME  F + +  +  GR P+++ L G++  ++ HRRE++ RR+ F 
Sbjct: 309 AYALVILNQLYKFTQMEVSFGIILLAIVNGR-PEILTLKGMIDHFIKHRREIIVRRTIFD 367

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL  A   +DE+I +IR+    K     +++ F  +E Q  AIL++RL
Sbjct: 368 LKKAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAEFQFSEIQAQAILDMRL 427

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I +E + LL +     ++L +     + I  E+ E++  +       RR 
Sbjct: 428 QRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDE----RRS 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548
               +    D     + +I +E + V +S++G+I        R+ +     L+    KE 
Sbjct: 484 EIIDDAEEID----MEDLIAEEDMVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEE 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           D ++    A + D  L  +  G+ Y      +P G  +S    G+AI  L+DL   + + 
Sbjct: 540 DFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMS---RGKAIVNLLDLKKGERLA 596

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVTGD 659
           T   V D      VV +    F V+++E+ A +     G   LK+   +++  V   +GD
Sbjct: 597 TILPVRDYEEGKYVVMATKMGF-VKKTELKAYSHPRSVGTIGLKIRENDELIAVRVSSGD 655

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             + +  +  K + F   ++  M R     +    + G   V    + EG T +      
Sbjct: 656 QDIFLTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEVVGMETLGEGATILTVTENG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           + +  N        R G G +  K   R+G
Sbjct: 716 FGKRTNREEYPTQARAGKGVITIKTSERNG 745


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/607 (38%), Positives = 375/607 (61%), Gaps = 32/607 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E+       IV+ E+PYQ  K+RLI +IAEL+  K+I  + ++RDES  E +R+V
Sbjct: 247 AKPHIEK-KTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+
Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +
Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F   
Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
            D+ R      ++         + +I  E + V I++RG+I+ + S   +          
Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
           A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L
Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592

Query: 597 NHNQDIV 603
              + I+
Sbjct: 593 QAEEKIM 599


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 256/718 (35%), Positives = 389/718 (54%), Gaps = 72/718 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRR++ AM E G      ++KSAR V
Sbjct: 25  VSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARPV 84

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+YD+LVR+AQPF     L+ GQGNFG++DGD AAA RYTE RM + 
Sbjct: 85  GDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDKP 144

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT IP HN+ E+
Sbjct: 145 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGEV 204

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALI NP++S E L+E I  PDFPTG  I+  R    ++Y  GRG   VRA+  +E
Sbjct: 205 IDGTLALIANPDLSTEALMEIIPAPDFPTGATIL-GRSGARKAYLEGRGSIIVRAKTRIE 263

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + I++ EIPYQV K+R+IE IAE +  K+I  +  ++DES    VR+V+  K R
Sbjct: 264 EIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELK-R 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  + M+  F  NM  L+ GR P+ + L   L  ++  R EV+ RR++F
Sbjct: 323 DATADVVLNQLYRFTPMQISFACNMLALNGGR-PEQLALRDFLTHFITFREEVVARRTAF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P    + +M  R              
Sbjct: 382 ELRKARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLID 441

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   +I  EL +L  +      +L S  
Sbjct: 442 DPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRD 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ E++ +F+       RRT   + S        + +IE+E + V I++ G+
Sbjct: 502 RIMAIISTELAEMRALFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 553

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        RS       L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 554 IKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 613

Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
           L+GR   G+AI  ++ +     I      D       + +++  +S G+    + S+   
Sbjct: 614 LAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTN 673

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691
             R GK  +K+   E + LV      + A+  EN  +++ +       S G+ +R  +
Sbjct: 674 VMRNGKIAMKLP--EGVSLV------NAAIADENDDVMLVT-------SGGRAIRFPT 716


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 360/605 (59%), Gaps = 60/605 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A ++L  +D+D VD+ D Y+  +  P V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 SKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A LALI +  ISI+ L+ Y+ GPDFPTG II   R  IV++YR GRG   VRAR 
Sbjct: 188 REVVNACLALIGDAHISIDDLMRYLPGPDFPTGAII-NGRAGIVQAYRTGRGRIYVRARA 246

Query: 257 CV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            V   E+ GR +  I+V EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+
Sbjct: 247 EVITDEKTGRDT--IIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +    D+++ +++  + ++  F +NM  L  G+ P+V+ L  IL+ +L HRREV+ 
Sbjct: 305 IELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------M 417
           RR+ F ++    R  +L+GL IA  NID++I +++    P                   M
Sbjct: 364 RRTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSM 423

Query: 418 VSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           + R                     + L+  Q  AIL+LRL  L  LE  ++  E  + LA
Sbjct: 424 LERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLA 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E   I  LL+  + +   +A    E++EI   +T+ G  R T  E+  + +    + +I 
Sbjct: 484 E---IADLLDILQDRERLLAVIREELEEI---ATEFGDERRT--EIRDSQEDLTAEDLIT 535

Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568
            E   V +S+ G+ ++  L  + V        +AL  K+ D ++  L A+T D +L  + 
Sbjct: 536 PEDRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTN 595

Query: 569 DGKAY 573
            GK Y
Sbjct: 596 LGKVY 600


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 358/592 (60%), Gaps = 31/592 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+   +A +KS+ +VGE +G 
Sbjct: 27  MEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEAGVTSNSAHRKSSSVVGETMGD 86

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARM+ +AE +L 
Sbjct: 87  YHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMSPIAEELLA 146

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF   Y++   EP V P+ FPNLL NG+SGIAVGM+T+IP HN+ E+ +A +A
Sbjct: 147 DIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNGSSGIAVGMSTNIPPHNLGEVIDATVA 206

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV-EEVGRG 264
           LI  P+ ++E L+E++ GPDFPTG  IV  R ++ ++Y+ GRG  RVRA + V EE GR 
Sbjct: 207 LIKEPDCTVEDLMEHVKGPDFPTGANIV-GRNAVHKAYKTGRGRVRVRAEFEVDEEEGR- 264

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323
              IV++E+P+Q  KSRL+E+IAE +    I  + D+RDES  D +R+V+  K  ++   
Sbjct: 265 ---IVISELPFQQNKSRLVERIAEDVNDGSIEGIRDLRDESDRDGIRVVVELKRDAMAE- 320

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            ++++  + S +E  F + +N+  +   PQV+ L   L+ ++ HRR+V+ RRS   +   
Sbjct: 321 -VVKNQLLESHLERTFGV-INLALVDGSPQVLDLKQTLEYYVEHRRDVVRRRSEHELAER 378

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + R  ILKG L A   +D+++  I+N D     K  + + +  +E Q + I+ ++L SL 
Sbjct: 379 EDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAALEADYEFSEAQAEHIVRMQLGSLT 438

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +E  +I+SE +++ A  E+++++L    +    I  E+RE+K+ +        RRT+F 
Sbjct: 439 SMETQEIESEYEDVTARIERLETILGDPDELDQVIITELREIKDEYDDE-----RRTSFI 493

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           E          + +I +E   VV+S   +I+ +   +          +     KEGD + 
Sbjct: 494 EDV---GDVTHEDLIPEEECVVVMSEDDYIKRMSLDTFRAQNRGGKGIIGTDLKEGDRVS 550

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
               A++ D +L+ +  G+ Y L    +  +S    G++   LIDL+  ++I
Sbjct: 551 SVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTARGKSAVNLIDLDDGEEI 602


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/663 (35%), Positives = 386/663 (58%), Gaps = 43/663 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++  N +   ++ +  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  
Sbjct: 3   EDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLN 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL+    +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGN+G+IDG
Sbjct: 63  LGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+ ++AE +L  +++D +D++  +++ + EP V P+KFPNLL NG SGI
Sbjct: 123 DNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGASGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  A +A ID+  I I +L++++ GPDFPTGGII    E   E+ 
Sbjct: 183 AVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIY-GFEGAREAS 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RAR  +E        I+VTEIPYQ+ KS +IE+ AEL+  K++  +  +RD
Sbjct: 242 ETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V++   R  +  +++ ++F  + ++T F +N   L  GR P ++ L  ++  
Sbjct: 302 ESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGR-PMLLNLKDLIHH 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+ + P      +++R
Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L++ Q  AIL++ LR L  LE  +IK+E + L+   + + S+L     +   I  E+ 
Sbjct: 421 FNLSDIQARAILDMTLRRLTGLERDKIKAEYNELMKLIDYLKSILADEGLRMEIIKNELI 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD 539
           E+KE +        RRT     S    A +Q +  IE E + + IS+ G+I+        
Sbjct: 481 EIKEKYGDE-----RRTQIVHSS----AEMQTEDFIEDENVVITISHEGYIKRTPLTEYR 531

Query: 540 LSAL--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH 586
             A         + ++ D ++  L A   + +L  +  G+ + L     P G   S    
Sbjct: 532 TQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFWLRVFEIPEGTRTS---K 588

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLK 643
           G AIQ +I++   ++I  A++  ++ K        +   +E + II  TRKG   KT L+
Sbjct: 589 GRAIQNIINIPKEENI-KAYIKLTSLK--------DRDYLENNFIIMCTRKGVIKKTSLE 639

Query: 644 VSS 646
             S
Sbjct: 640 AYS 642


>gi|21228522|ref|NP_634444.1| DNA gyrase subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 410/712 (57%), Gaps = 43/712 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +M+E G+     +KKSARIVG+V+GK
Sbjct: 27  MKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKSARIVGDVLGK 86

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+IDGDSAAA RYTE RM ++AE +L 
Sbjct: 87  YHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRMDRIAEEMLV 146

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   Y+    EP V P++ PNLL NG++GIAVGMAT++P HN+ E+ +  L 
Sbjct: 147 DIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHNISEVIDGILM 206

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NPE  I +L+  I GPDFPTG  I+ +   I  +Y  GRG  R+RA   ++E+ +  
Sbjct: 207 LIENPETQISELMTVIKGPDFPTGAHILGT-AGIRSAYMTGRGPIRMRAVAEIQELKKDR 265

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+VTE+PYQV K++LIE IA+L+  K I  + D+RDES  E +R+V+   +R ++P++
Sbjct: 266 QQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVV-ELSRGVNPNV 324

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + M T F + +N+  +   P+ + L  +L+ +L +R E++ +R+ + ++  +
Sbjct: 325 VLNQLYKHTQMATTFGV-INLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTLYDLRKSE 383

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NID ++A+I+   N D+ K  ++  F+L E Q  AIL +RL+ L  
Sbjct: 384 ERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAILEMRLQRLTG 443

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I  EL+ L+ + E++  +L S + ++  I  E+ E+K+   K  D+ R R     
Sbjct: 444 LETRKILDELEALVKQIEELRKILASDELKYEIIRTELSELKD---KYGDIRRTRIVHNT 500

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKI 553
            +  D     + +I +E + V I+N G+I+ +   +  +          +  KE D ++ 
Sbjct: 501 ENVTD-----EDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFVEN 555

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607
              + T + IL  +  G     K Y +P G   S +  G+AI  L++L   + +V A + 
Sbjct: 556 LFISSTHNYILFFTNRGRLYWQKVYEIPEG---SRQSRGKAIVNLLELQEGE-MVNAMIS 611

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HV 661
              +     L + +  G       SE     R G   + VS +E  +LV  +  D    +
Sbjct: 612 VEEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAG--IIAVSLDEGDELVKVLLTDGKQEI 669

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +V +  K + FS + +  M R  +GVR  +  +G   +V+   + +  T +
Sbjct: 670 MMVSKKGKAIRFSEEDVRPMGRTARGVRGMTL-EGPDDEVVSLDLVDETTTL 720


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/524 (42%), Positives = 335/524 (63%), Gaps = 20/524 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++  M E+  D+   +KK
Sbjct: 5   ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD AAA RYTE 
Sbjct: 65  SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  IL+ +D++ VDF   Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A  ALI+NP++  E+LL+Y+ GPDFPTGGII   R  I  +Y  GRG  ++RA
Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGIIY-GRAGIHSAYSTGRGIIKIRA 243

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           R  VE+  R G   +VVTE+PYQV K+R+IEKIA L+  K I  L  +RDES  E +RI 
Sbjct: 244 RIMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIA 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K   +   +++  ++  + +E  F + +  +   R P+++ L   L+ ++AHR+ V+
Sbjct: 304 MGLKKDEM-ASIIINKLYKHTQLENSFGIILLSIVNNR-PELLNLKETLQYFIAHRKVVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G  IA  N+DE++ +IR    P   +  +++RF LT+ Q  
Sbjct: 362 IRRTKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMARFDLTQIQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI--REVKEIFS 487
           AIL++RL+ L  LE  +++ E   L+    +   +L S     +Q+  EI   E+ E+ +
Sbjct: 422 AILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILAS-----DQLVLEIVRDELLEVRT 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           +  D   RRT   E+   +     + MI +E + V IS+RG+I+
Sbjct: 477 EYVD--ERRT---EIVDDEGEITIEDMIVEEDMVVTISHRGYIK 515


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE++I++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++  E   +L +  +
Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E +
Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK 
Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 400/718 (55%), Gaps = 44/718 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN S+SNT      +A S+   ++  Y+ Y++S I  RA+PD RDGFKPV RRI++AM  
Sbjct: 3   DNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAMLR 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            GL     F K A +VGEV+   HPHGD SVYD+LVRLAQ +V RYPLI  QGNFG+IDG
Sbjct: 63  EGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AAYRYTE ++  +AE  L+ +DED VDF   Y E  +EP V P+  PNLL NG++GI
Sbjct: 123 DSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGM T+IP HN+ EI +AA A+IDNP+I +++L+++I GPDFP GG I    +S +ESY
Sbjct: 183 AVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGGFI--HGKSGIESY 240

Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            + GRG  R R    V E  +G   I+++ IPY V ++ L+ +IAELI  K I  + D+R
Sbjct: 241 LKTGRGIVRTRGVAEVVE-NKGKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES E+ RIV+  K R   P +++  ++  + +E+ F + +  L   R P+ M +  +L 
Sbjct: 300 DESTEETRIVIELK-RGAIPRVIINQLYKSTALESSFGVILLALD-NRRPKQMNIKEMLT 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            ++ HRREV++RR++FR++  + R  IL+G  IA  N+D+ + IIR   N ++ K  +++
Sbjct: 358 CYIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMA 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q +AIL LRL  L  LE  +I+ E   L+    ++  +L +  +    I  E+
Sbjct: 418 KYPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRLLEVIKEEL 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
            E+KE +        RR+    V   D     + ++  E   + ++++G+I        R
Sbjct: 478 GEMKEKYGNP-----RRSQVIAV---DGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
           S K     +      E D ++    A T D ++     G     K Y +P G   S    
Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEG---SRTAK 586

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G A+  + +L   + I        +D + + +V++++       +     N RKG   + 
Sbjct: 587 GRAMANVFELQEGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKG-GIIG 645

Query: 644 VSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD 694
           ++ +E   LV  ++T   D + +V  N + + F    + +  R     +G++L+S  D
Sbjct: 646 INIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSEND 703


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|332287451|ref|YP_004422352.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 263/722 (36%), Positives = 402/722 (55%), Gaps = 53/722 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D +R+
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISAWVRHRTEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +D+++  IRN D     K  ++ +F  TE+Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEKFGFTEHQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++   
Sbjct: 422 IAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RRTT      AD     + +I  EP+ + IS   +++ +        K     +
Sbjct: 482 P-----RRTTI--EFDADDIRDIEDIITNEPVIITISGDDYVKRMPVKVFREQKRGGHGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584
           S    K+G D LK    A T D +L+ +  G+ Y      LP G          N L G 
Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
             GE +  ++++ + ++    F++ +T   +V     +AF        +N R KG   L+
Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKHGVVKKVALDAF--------SNPRKKGIRALE 644

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++   V +T +   V+   R    + F  D++  M R  +GVR  S K+     V
Sbjct: 645 IDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704

Query: 701 IC 702
            C
Sbjct: 705 AC 706


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/693 (35%), Positives = 401/693 (57%), Gaps = 46/693 (6%)

Query: 22  LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +R  +EE+    Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M+E+G      +KKSAR
Sbjct: 8   IRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPYKKSAR 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD S+Y +LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR+ 
Sbjct: 68  IVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYTEARLM 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++AE +L  +D++ VDF+  ++E   EPVV P++ PNLL NG+SGIAVGMAT++  HN+ 
Sbjct: 128 KLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMAPHNLS 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E  +A +A I NP+I+IE+L+ +I  PDFPTGGII      + E++  GRG   +R++  
Sbjct: 188 ETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIY-GYAGVREAFETGRGRIIIRSKCE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           +E    G   IVVTEIPY V ++ LI+ IA L   K++  + +I DES  + +RIV+  K
Sbjct: 247 IETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIVIDIK 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  S +++ F +N   L  GR P+ + L  ++  ++ HR EV+ RR+
Sbjct: 307 -RDGNANVILNKLYKYSQLQSSFSVNNVALVKGR-PRTLNLIDLISNFVEHRHEVVTRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            F +     R E+L+GL+I   N+DE I IIRN   P      +++RFSLTE Q   ++ 
Sbjct: 365 QFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIARFSLTERQAAYVVE 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRLR L  +E+ ++++E + LL   E +  +L   +++   I  E+ E+   F       
Sbjct: 425 LRLRQLTAMEQDKLRTEYEELLKRIEDLRDILAKVERRMKIIEDELMELGSKFGD----- 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHF 545
           +RRT   E+  A +    +     + + + IS++G+I+       K+ +   V       
Sbjct: 480 KRRT---EIVYATEDMNPEDFYADDQMIITISHQGYIKRTALAEFKAQNRGGVGSKGGAT 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A   + +L  +  G+ Y L   ++  G     G A+Q ++++  + D +
Sbjct: 537 KDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSKTSKGRAVQNMLNIEAD-DKI 595

Query: 604 TAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKL 652
            AF+         Y+S   L+  +  G   I++++ + A +R  +  +   +  E    +
Sbjct: 596 NAFIRVKNLQDPDYNSKHYLVFCTQNG---IIKKTCLEAYSRPRQNGVNAITIRENDQVI 652

Query: 653 VVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR 683
            V++T  +  +V  NR  + + F   ++ EM R
Sbjct: 653 QVRLTDGNSEIVIANRQGRAIRFHESKVREMGR 685


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/601 (38%), Positives = 356/601 (59%), Gaps = 51/601 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR VG+V+G+ HPH
Sbjct: 5   YLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L  +D+
Sbjct: 65  GDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VD++D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LALI++
Sbjct: 125 DTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALIED 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  VEE+ +  W IV
Sbjct: 185 PDLTSEQLIDYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRAKTRVEEIRKDRWAIV 243

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           + EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K R    +++M  
Sbjct: 244 IDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELK-RDATAEVVMNQ 302

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR+++ ++    R  
Sbjct: 303 LYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERSH 361

Query: 389 ILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSR------------------------ 420
           IL GL +A  NIDE++A IR+     +  + +M  R                        
Sbjct: 362 ILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDDG 421

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            ++L+E Q  AIL LRL+ L ++   ++  EL+ L ++ ++   +L S ++    I+ E+
Sbjct: 422 TYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDEL 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
           REV+E+F+       RRT   + S        + +I +E + V +++ G+I        R
Sbjct: 482 REVRELFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 533

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
           + +     +S +  KE D +     A+T  ++L  +TDG  Y L    L  G     G+A
Sbjct: 534 AQRRGGKGVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKA 593

Query: 590 I 590
           I
Sbjct: 594 I 594


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/607 (39%), Positives = 354/607 (58%), Gaps = 57/607 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G      + K
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I ++YR GRG   VRA
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGIEDAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S  + + IV+
Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ 
Sbjct: 305 EIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLKQIIEAFVMHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-----------DKP--------- 413
           RR+ F ++    R  IL+GL IA  NID +I +IRN            D+P         
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 414 ---------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                    +P        V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL 
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++  +LNS ++    I  E+ ++K  F        RRT   E++ A      + +I 
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTL 575
            G+ Y L
Sbjct: 595 CGRLYQL 601


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/704 (35%), Positives = 402/704 (57%), Gaps = 39/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N + V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+EMG+     +KKS
Sbjct: 11  NYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMGVTPDKPYKKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD AAA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D VDF+D Y++E+ EPV  PS+FPN+L NG +GIAVGMAT+IP HN
Sbjct: 131 MSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A   L+ NP++S+ +L+E + GPDFPTGGI++  +  I ++Y+ G+G   VR+R
Sbjct: 191 LGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVM-GKSGIRKAYQTGKGKIIVRSR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +E++      IVVTEIPY V K++L+E+IAEL   K+I  +  + DES  E +RIV+ 
Sbjct: 250 VEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADESGREGMRIVVE 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            + R    ++++ +++  + ++  F  NM  +  G VP++M L  IL ++L ++ EV+ R
Sbjct: 310 VR-RDTSANVVLNNLYKYTALQVTFGFNMLAIDKG-VPKIMSLKEILTKYLEYQIEVIRR 367

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL  A   IDEIIAIIR   + +  K  ++ RF  +  Q  AI
Sbjct: 368 RTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIERFEFSPIQAQAI 427

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I++E ++L+    ++  +L+S       I  E+ ++K  F     
Sbjct: 428 LDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIMAIIEDELADIKNRFP---- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--SNRGWIRSLKSHSVDLS-------- 541
            G RRT      R  + T  +     E   V+I  ++ G+I+ +      +         
Sbjct: 484 -GERRTEL----RVGELTSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQVQNRGGRGVK 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---- 597
            +   + D+++  +   T D +L  +  GK Y     ++       + I ++  LN    
Sbjct: 539 GMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIPVVNLLNIEKE 598

Query: 598 -HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLKVSSEEKMKLV 653
            + ++I+     D    L  V+  G   IV+ S++   AN R  G   L +  ++++  V
Sbjct: 599 EYVKEIIVLHPSDEDQYLFFVTKNG---IVKRSDVSAYANIRNNGLIALNMREDDELINV 655

Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   G    ++G  N   + F+      M R   GVR    ++G
Sbjct: 656 LVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGMKLREG 699


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/768 (34%), Positives = 430/768 (55%), Gaps = 46/768 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + ++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  GA 
Sbjct: 5   LNNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAK 64

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA RY
Sbjct: 65  FKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRY 124

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 125 TEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN +EI     AL+ NP+IS+ +L+E+I  PDFPTGGII   ++ I+++Y  GRG  +
Sbjct: 185 PPHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIF-GKKGIMDAYETGRGRIK 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E+  +    IV+ E+PYQV K+RLIE IA L+  K I  + ++RDES  D   
Sbjct: 244 VRAKTHIEQKSK-KEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    ++++ ++F  + M+T F + M  + + + P++  +  ILK ++ HR+ +
Sbjct: 303 VVIELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSI-LNQEPRIFGIITILKHFINHRKTI 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R  IL+GL  A   I+++I +IR   NE+  K  +VS F  ++ Q 
Sbjct: 362 IIRRTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSEFDFSDIQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +I+ +RL  L  LE  +I++EL  L+   E ++S+L S +   + IA E  EV + +  
Sbjct: 422 ASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEEVLHSIIAEEFDEVLDTYGS 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
           +     RRT    +         + +I  EP+ V I++RG+I+ +        K      
Sbjct: 482 N----ERRTE---IEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLTLYEKQKRGGKGK 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595
           +A+   E D ++     +T D +L ++  G     K Y +P G+ ++    G+A+  L++
Sbjct: 535 TAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIA---KGKAVVNLLN 591

Query: 596 LNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++    I+    +     L+  + KG       SE  +N R       V  E+   +
Sbjct: 592 LMADERIRSIIPTTDFSEDKGLVFFTQKGVVKRTNLSE-FSNIRSNGVRAIVLDEDDALI 650

Query: 653 VVKVTGDHVAVVGENRKL---LIFSIDQIPEMSRG----KGVRLQSYKDGGI-SDVICFK 704
             K+    +  +    KL   + F I++  E  R     +G++ +  +D  I +++I   
Sbjct: 651 TAKIADQSIKYLFIMTKLAQCIKFDIEKTREQGRSTRGVRGIKFKHPEDEVIDANIIAND 710

Query: 705 ICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             E L   +   G+  +  E      L  RGG G +  K   ++GK++
Sbjct: 711 EQEILIVAEKGIGKRTDAGEY----RLTNRGGSGVIAMKMTSKTGKYV 754


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/603 (38%), Positives = 361/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDN +I++++L+++I GPDFPT G+I   R+ I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNSDITVDELMQFIPGPDFPTAGLI-NGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++    
Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINIVALIDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                  VMV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQVMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI +E  
Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILDARHDLNYGDMIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D ++  L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600

Query: 573 YTL 575
           Y L
Sbjct: 601 YWL 603


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/702 (34%), Positives = 408/702 (58%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E +R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     ++R  IL+GLLIA  ++DE+I+IIRN +     +  ++SRF+L+E Q  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSRFNLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LL     +  +L   ++    I  E+ E+K    K 
Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMDEIKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L              + 
Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599
                + D ++  +  +T D I  ++  G+ Y L    +   GR   G  I  L+ L+  
Sbjct: 533 GTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEG 592

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + + T        D+   L  V+ +G     +ESE     + G   L +   +++  V++
Sbjct: 593 ETVQTIISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELINVIR 652

Query: 656 VTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             G+   ++G      + F+   +  MSR   GVR  + ++G
Sbjct: 653 TNGNDDIIIGTKTGYSVRFNESDVRSMSRSATGVRGVNLREG 694


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/688 (36%), Positives = 385/688 (55%), Gaps = 62/688 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + ++S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  MGL F   ++KS
Sbjct: 15  GIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHGMGLTFNRPYRKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE R
Sbjct: 75  AGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSIDGDPPAAMRYTETR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V++ +L  +D++ V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 135 LYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  +A+IDNP I++E+L+ +I GPDFPTG I++  R  I+ +Y  GRG   +R +
Sbjct: 195 LGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVL-GRAGILSAYSTGRGSILMRGK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +      IV+TE+P+QV KS +IEK+A+L+  KRI  + DIRDES  D   V+  
Sbjct: 254 AHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIRDESDRDGYRVVVE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ GR P+ M L  +L  +++ R EV+ RR
Sbjct: 314 LKRDASSDVILNQLYRFTPLQTTFGANMVALNGGR-PEQMTLPDMLSAFISFREEVVNRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + + ++    R  +L GL IA  NIDE+I +IR    P   +  +++R            
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTRAWEAKDVAPLIR 432

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+E Q  AIL+LRL+ L  L   +I  EL+ +  E  +   +L+
Sbjct: 433 LIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKIGEEIREYLEILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  V++ F+       RRT   E+S        + +I +E + V +S+
Sbjct: 493 SRVRVREIIKEELIAVRDEFATP-----RRT---ELSEGAADMDDEDLIPREDMVVTVSH 544

Query: 527 RGWI--------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KA 572
            G+I        RS +      + +  K + DS+     A+T   +L  S+ G     K 
Sbjct: 545 GGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKV 604

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKL--LVVSSKGNAFIV 626
           + LP   L S +  G+A+  ++ L   + I +        D+  +L  +  +++G     
Sbjct: 605 WRLP---LASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRRN 661

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + S+     R GK  +K+  +    L V
Sbjct: 662 KLSDFTQVNRNGKIAMKLDEDGDEILAV 689


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/692 (35%), Positives = 385/692 (55%), Gaps = 40/692 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIVG+V+GK HPH
Sbjct: 22  FLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPYKKSARIVGDVMGKYHPH 81

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++A  +++ +++
Sbjct: 82  GDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARMSKIAHEMVRDMNK 141

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+ E+ EP V P++FPNLL NGT+GIAVGM T+IP+HN+ E+  A   L+ N
Sbjct: 142 DTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIPTHNLSEVIGAIKILMQN 201

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            + +  +L+E + GPDFPTGGI++  +  I ++Y  G+G   VRA+  +E +  G   I+
Sbjct: 202 ADATTNELMEALPGPDFPTGGIVI-GKSGIRKAYETGKGTIIVRAKLDIETLSSGKERII 260

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V EIPY V K++L+E+IAEL   KR+  +  +RDES  +   V+    +     +++ ++
Sbjct: 261 VHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRVVIECRKDASASVIVNNL 320

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F +NM  +  G VP+ + L  IL+ +L H+ EV+ RRS F     + R  I
Sbjct: 321 YKYTQLQTNFGINMVAIVNG-VPRTLSLKEILQNYLLHQEEVIRRRSIFEKNKAEARAHI 379

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL IA  +IDEI+ I+R     D+ K   +  + L++ Q  AIL++RL  L  LE  +
Sbjct: 380 LEGLQIALDHIDEIVNILRTSRSGDEAKARFIEDYKLSDKQSQAILDMRLVRLTGLEREK 439

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   L+A+ + ++ +L S   ++  I  E+ E++   SK  D  R      E+   D
Sbjct: 440 IDKEHAELMAQIDYLNQVLGSETMRYQIIYDELIEIE---SKFGDDRRTELMVGEIHNID 496

Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +IE+  + V ++  G+I        R+       +  +   + D ++  L   
Sbjct: 497 ----DEDLIEESNVIVTLTQNGYIKRIDDVEFRAQNRGGTGVKGMSMNDDDFVETMLSTS 552

Query: 559 TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD------IVTAFV 607
           T D +L  +  G     K Y +P      GR   + I ++  LN  QD      I    +
Sbjct: 553 THDSVLFFTNTGRVFHSKGYEIPE----FGRA-AKGIPVVNLLNLQQDETVQAMINVTPI 607

Query: 608 YDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
            D+  K  LL V+  G       S+       G   LK++  +++  VV  +G D++ + 
Sbjct: 608 EDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKVVLTSGDDNIIIA 667

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             +   + F    +  M R   GVR     DG
Sbjct: 668 SRDGYAVSFQETNVRSMGRTATGVRGIRLNDG 699



 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 6/155 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL   EGD L   +     D I++ S DG A +    N+ S       ++  I LN  
Sbjct: 641 LIALKLAEGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRG-IRLNDG 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV---KV 656
             +V   V      +LVV+ KG       SE     R GK    ++  EK  ++V    V
Sbjct: 700 DQVVGMSVLGPDDNVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVGLTTV 759

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVRL 689
           +G+   ++  N+ + I F    I +  R  +GVRL
Sbjct: 760 SGEEDIMLMTNQGIAIRFHAKNISQTGRATQGVRL 794


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/605 (40%), Positives = 359/605 (59%), Gaps = 40/605 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   + + Y+ YA+S I  RAIPD+RDG KPV RRI++AM +MGL     F KSARIV
Sbjct: 6   VPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKSARIV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGDQ+VYD+LVR+AQ F   YPLI GQGNFG++DGD  AA RYTEA++++ 
Sbjct: 66  GTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAKLSRY 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+ +D++ VDF   ++    EP V PSKFPNLL NGT+GIAVG+ATSIP HN+ E+
Sbjct: 126 ALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLSEV 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+A + L  NP ++ ++++  I GPDFPTGG IVE+ + ++E Y  GRG  R+RA+  VE
Sbjct: 186 CKAVIELAKNPHMTTQEIMRIIKGPDFPTGG-IVENYQELLEFYEKGRGQVRIRAKAHVE 244

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +V  G   IVVTEIPYQV K+ LI++IAEL+   R+  + DIRDES  E +RIV+  K R
Sbjct: 245 KVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIELK-R 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               + ++E ++ L+ +   FP+N  VL  G  P+ + +  +L+E++ HR EV+ RRS +
Sbjct: 304 DASGEKVLEKLYKLTALRKNFPINFVVLIDGE-PRQVGIKTLLQEFIRHRLEVILRRSRY 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R+ +++GLL A  N+D +IA IR+ +   + +  +  ++ LT  Q +A+L++R
Sbjct: 363 LLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYGLTPLQAEAVLDMR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +++ E   L  + E    ++ S   +  ++   I E++E+      L   
Sbjct: 423 LQRLTSLERNKLEEEERGLRQKVEYYRRVIGS---EDERVRILIEEMEELIRT---LPSV 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R TF E    +  T          ITVVI   G I         L     +EG  + I L
Sbjct: 477 RRTFVEGLEGEDKT--------GSITVVIYQNGRI---------LPVTSMEEGVVVNI-L 518

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFVYDSTCKL 614
                D + L+S+ G+ Y +     L G          IDL    + +V AFV       
Sbjct: 519 EVPYDDGLFLVSSKGRVYWIGGSQALQGS--------RIDLKEQGEYVVGAFVRSQASDR 570

Query: 615 LVVSS 619
           LV+++
Sbjct: 571 LVLAT 575


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 342/590 (57%), Gaps = 46/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G      ++KSAR V
Sbjct: 19  VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 79  GDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP+HN  EI
Sbjct: 139 ASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGASGIAVGMATNIPTHNPAEI 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI NP+++++ L+  + GPDFPTGGII+     I  ++  GRG   +RAR  +E
Sbjct: 199 IDATLALIANPDLTLDDLIRIVPGPDFPTGGIIL-GHAGIRSAFETGRGSILIRARAEIE 257

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R    IV+TEIPYQV K+ L E+IAEL+ AK+I  + DIRDES      ++    R 
Sbjct: 258 ELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIRDESDRSGMRIVIEIKRD 317

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++  R +V+ RR+ F 
Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDNGQ-PRLMGLKDVLEAFITFREDVILRRARFD 376

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411
           +     R  +L GL+IA  NID +IA+IR                             +D
Sbjct: 377 LNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMATAWDAADVEPLLALIQD 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +   V   +  LTE Q   IL LRL+ L  LE  +I+ EL  + A   ++ +++ S  ++
Sbjct: 437 EGNVVTDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEVAARINELLTIIASRPRR 496

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI- 530
             ++ CE     E+ +   +L   R T  E+++       +++IE   + V I+  G+I 
Sbjct: 497 M-EVMCE-----ELAAIRAELATPRMT--EIAQYAGDQTDESLIEPGQMVVTITREGFIK 548

Query: 531 -------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                  R+        +A   +  D +  + +AHT   +L  S+ GKAY
Sbjct: 549 RTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAY 598


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/431 (46%), Positives = 296/431 (68%), Gaps = 10/431 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RRE 
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI
Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422

Query: 432 LNLR--LRSLR 440
           L+ +  LR+ R
Sbjct: 423 LDTKYALRTER 433


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/670 (37%), Positives = 377/670 (56%), Gaps = 84/670 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+
Sbjct: 2   TDNLFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGD+AAA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT GII  +   + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGT-AGVKEGYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR   E +G+G    I+V EIPYQV K+RL+E+I+EL+  K+I  + D+RDES +
Sbjct: 241 RVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   P++++  +F ++ ++  F +NM  L  G+ P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+  + P              
Sbjct: 360 RREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRS 419

Query: 417 -----MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                M+SR                     + L++ Q  AIL++RL+ L  LE+ +I  E
Sbjct: 420 SLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQDKIVGE 479

Query: 451 LDNLLAEKEKIDSLLN-----SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
                  +E +D +L+     +  ++ +QI  E     E+ +     G  R +  E    
Sbjct: 480 Y------REIMDVILDLLDILAKPERISQIIGE-----ELTAIRAQFGDPRRSEIEPYGG 528

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557
           D     + +I  + + V IS+ G+I+        S +       A   K+ D ++    A
Sbjct: 529 DINI--EDLITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVA 586

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLIDLNHNQDI 602
           +T D +L  S+ G     K Y LP G   S RG           GE I  L+ +   +D 
Sbjct: 587 NTHDYVLCFSSRGRCYWRKVYDLPQGGRQS-RGKPMVNVLPLEEGEKINALLPVKEFRD- 644

Query: 603 VTAFVYDSTC 612
              FV+  T 
Sbjct: 645 -DQFVFMCTA 653


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 258/727 (35%), Positives = 396/727 (54%), Gaps = 73/727 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A  +L+ NPE ++E+L+E +  PDFPT GII  +   + E YR GRG   +R R   E
Sbjct: 191 LDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTV-GVKEGYRTGRGRVVMRGRTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    R
Sbjct: 250 DMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420
            ++    R  +L+GL +A  N+DE+IAII+    P              PV   M+ R  
Sbjct: 369 ELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRAA 428

Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                       F LT N       Q   IL +RL+ L  LE+ +I +E   ++     +
Sbjct: 429 MEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L +  +    I  E+ E++  F       +RR+   E   A   +L+  +I  + + 
Sbjct: 489 LDILATAARVTAIITDELTEIRRQFGD-----KRRSEIVE--NAQDLSLED-LIAPQDVV 540

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G+I        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 541 VTLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVY 600

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFI 625
             K Y +P G+  S    G+ I  L  L  N+    I++   +D    + + +S G    
Sbjct: 601 WLKVYEVPQGSRTS---RGKPIVNLFPLEENEKINAILSVKSFDENHFIFMATSLGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              +E     R G   + ++ +E   L+   +    + V +V    K + F  D++ +M 
Sbjct: 658 TALTEFANPRRSG--IIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMG 715

Query: 683 RG-KGVR 688
           R  +GVR
Sbjct: 716 RATRGVR 722


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/652 (36%), Positives = 380/652 (58%), Gaps = 42/652 (6%)

Query: 14  EENVKAVSLRF--ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +EN K + +     ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M ++GL     
Sbjct: 8   QENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGLANNKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGNFG+IDGD  AA RY
Sbjct: 68  YKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFPAAMRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG SGIAVGMAT++
Sbjct: 128 TEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVGMATNM 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E   A +A ID+ +I I +L++++  PDFPTG II      + E++  GRG   
Sbjct: 188 PPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIY-GYTGVQEAFETGRGRIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  + E  +    I+VTEIPYQV K+ +IE+ AELI  K+I  + +I+DES +D   
Sbjct: 247 MRAKAEI-ETNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESNKDGIR 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +++   R  +  +++ ++F  + ++T F +N   L  GR PQ++ L  +++ ++ HR +V
Sbjct: 306 IVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGR-PQLLNLKDLIRHFVDHRHDV 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+ F +    +R  IL+GLLIA  ++DE+I +IR  + P+     ++ +F L++ Q 
Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQFGLSDIQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++ LR L  LE  +IK E + L+   E + S+L+S + +   I  E+ E+KE +  
Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDSKELRMQIIKDELNEMKEKYGD 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 RRTT   V  A+  +++   IE E + + IS+ G+I        R+        
Sbjct: 485 E-----RRTTI--VHSAEDMSMED-FIEDEDVVITISHEGYIKRTPATEYRTQGRGGKGS 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLID 595
                +  D ++  L A   + +L  +  G+      Y +P G+ LS    G AIQ +I+
Sbjct: 537 KGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPEGSRLS---KGRAIQNIIN 593

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +   + I  A++     K        +   +E + II  T+KG T  K S E
Sbjct: 594 IPKEEKI-KAYIKVKNLK--------DQEYLENNYIIMCTKKG-TIKKTSLE 635


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 252/705 (35%), Positives = 408/705 (57%), Gaps = 48/705 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  GA +KKSA
Sbjct: 10  INDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIG+ HPHGD SVYD+LVR+AQPF  R PL+ GQGNFG++DGD+AAA RYTEARM
Sbjct: 70  RIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYTEARM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L+ +++D VD  D Y+    EP V P++ PNLL NG+SGIAVGMAT+IP HN 
Sbjct: 130 TRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIPPHNP 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A + L+DNP  S+  ++++I  PDFPTGG I   ++ I+++Y  GRG  RVRA+ 
Sbjct: 190 NEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIY-GKKGILDAYETGRGRIRVRAKT 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            +E+       IV+ E+PYQV K+RLIE IA+L+  K I  + +IRDES  E +R+V+  
Sbjct: 249 HIEKKSNKD-VIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVVIEL 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  ++MET F + M +    + P+V  L  +L  ++ HR+ V+ RR
Sbjct: 308 KRDAM-SEIVLNNLYKSTNMETTFGIIM-LSVFNQEPRVFTLLEMLGHFINHRKTVIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL  A  +I+ II +IR   + +  K  ++  F  +  Q  AIL
Sbjct: 366 TIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEEFGFSPIQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
           ++RL+ L  LE  +I++EL  +L   E ++S+L S +     I  E  E+ E ++  + T
Sbjct: 426 DMRLQRLTGLERDKIENELKEILTHIEYLESILRSEEVLKGIIKEEFVELVEQYNIPRVT 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------A 542
           D+      + +++  D       +I  EP+ V IS+RG+I+ +   + +          A
Sbjct: 486 DI---EDNYDDINIED-------LIPNEPMVVTISHRGYIKRVPLAAYEKQIRGGKGKVA 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +   + D ++     +T D ++ ++  G     K Y +P G   S    G+A+  LI+L 
Sbjct: 536 VTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEG---SRTAKGKAVVNLINLE 592

Query: 598 HNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
            ++    I+    +D    L+  +  G   IV+ + +   +N R       V  E+   +
Sbjct: 593 ADEKIRSIIPTTDFDEKKSLVFFTQNG---IVKRTALNEFSNIRSNGVRAIVLDEDDALI 649

Query: 653 VVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +  +   ++ +V +  + + F ID+  +  R  +GVR   +K
Sbjct: 650 TAHIATEETKYLFIVTKFAQCIKFEIDKTRDQGRSTRGVRGIKFK 694


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 272/752 (36%), Positives = 400/752 (53%), Gaps = 87/752 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 12  VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 72  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 132 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LAL+ NP++ IE+L+E +  PDFPT G I      + E YR GRG   +RAR   E
Sbjct: 192 VDACLALLKNPDMDIEQLIELVPAPDFPTAGFIY-GLAGVKEGYRTGRGRVVMRARTHFE 250

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++G+G    I++ E+PYQV K+ L+ KI E++  KRI  + +IRDES +     +    R
Sbjct: 251 DIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + D+++  ++  + M+  F +NM  +  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 311 GENADVILNQLYKDTQMQDSFGINMVAIVDGQ-PKLCNLKDVIEAFLRHRREVVTRRTIF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  IL+GL +A  N+DEIIA+I+    P                   M+SR  
Sbjct: 370 ELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRVD 429

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q  AIL LRL+ L  LE+ +I  E   ++   +KI
Sbjct: 430 EASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVM---DKI 486

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM-----IE 516
             LL+        I  +   V +I     +L   R+ F +  R++  T  Q M     I 
Sbjct: 487 TDLLD--------ILAKPARVTQIIGD--ELITIRSQFGDKRRSEIVTHTQDMSMEDLIA 536

Query: 517 KEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E + V +S+ G++        R+ K       A   KE D +     A+T D IL  S 
Sbjct: 537 PEDVVVTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSN 596

Query: 569 DG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVS 618
            G     K Y +P G  +S    G+ I  L+ L   + I     V  F  D    +   +
Sbjct: 597 RGRVYWLKVYDVPQGTRIS---RGKPIVNLLPLEAGEKINAILPVKQFAEDQF--IFFAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSID 676
           S+G       S+  AN RK         E    + V +T G H V +  +  + + F  D
Sbjct: 652 SEGTVKKTPLSD-FANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDED 710

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  M R  +GVR  +   GG   VI   + E
Sbjct: 711 DVRGMGRTARGVRGMNLAKGG--KVIALLVAE 740


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 379/640 (59%), Gaps = 43/640 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 8   DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 68  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 128 ARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 188 HNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIVLR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           AR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 307 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEVI 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q  
Sbjct: 365 VRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQSQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+  
Sbjct: 425 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD- 483

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
               +RRT     EV     +   + +IE+E + + +SN+G+I+ L        K     
Sbjct: 484 ----QRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584
           +      + D ++  +   T D +L  +  G+ Y                LP  NLL   
Sbjct: 536 VQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             GE IQ +I++  + D    +++ +T + +V  +  +AF
Sbjct: 595 DDGETIQTIINVKSD-DFHDKYLFFTTRQGVVKRTSVSAF 633


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/664 (37%), Positives = 381/664 (57%), Gaps = 69/664 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSMIE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------VMVSR- 420
           F ++    R  IL+G  +A  NID +IA+I+    P                   MV R 
Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVVAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ +E   +L +  +
Sbjct: 429 GADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L+S  +    I  E+  ++  +        RRT   + +R D  TL   MI +E  
Sbjct: 489 LIRILSSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ ++  L ++          SA   K+ D +   L A++   +LL S+ GK 
Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCKLLVVSSK 620
           Y L    +   S    G  +  L+ L+ ++ I T           F++ +T K  V  + 
Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660

Query: 621 GNAF 624
             +F
Sbjct: 661 LESF 664


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/730 (33%), Positives = 424/730 (58%), Gaps = 38/730 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR + AM EMG      +KKSA
Sbjct: 15  VNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKSA 74

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD S+YD++V++AQPF  R  L+ GQGNFG++DGD+ AA RYTE R+
Sbjct: 75  RVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVRL 134

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + AE +L  ++++ V+F   ++E   EP V P+K PNLL NG+ GIAVG+AT +P HN+
Sbjct: 135 KREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHNL 194

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A    +++P+ ++ +L++ + GPDFPTGGII+ + + I  +Y  G+G   VR   
Sbjct: 195 GEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGT-DGIQNAYLSGQGKLTVRGVA 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            ++E G+ +  I++TEIPYQV K++LIE IAEL+  KRI  + D+RDES +D   ++   
Sbjct: 254 EIDESGKRNQ-IIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDL 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P L++  ++  + +E+ F + +N   + R P+++ L  ++++++ HR  V+ RRS
Sbjct: 313 RKDARPQLILNHLYKHTALESTFGI-INYAIVDRQPKILGLIPLIEQFVRHRITVITRRS 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  +  + RV IL+GLL A  NID +I  IR     D+ K  ++++FSL E Q  AIL 
Sbjct: 372 EFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAKFSLDEAQAGAILQ 431

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE+ ++  E + L AE  K+  LL+S      +I+ E++E++E ++      
Sbjct: 432 MQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSEDNIRAEISRELQELREKYAD----- 486

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
           +RRT   +++   +  +++ +I  + + V ++++ +++ +   +  +          +  
Sbjct: 487 KRRT---QITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDAYRVQGRGGRGVMGISI 543

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIV 603
           K+GD ++    A+T D +L  ++ G+AY L   ++  G  +  G+AI  L+DL  +++ V
Sbjct: 544 KDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKGKAIVNLLDLR-SEERV 602

Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           TA +    + S    L ++ +G    + + E       G   + +   + +  V+   G 
Sbjct: 603 TAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRSTGVNAISLREGDNLVHVMVSDGS 662

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDS 714
             + +  +  + L F  +QIP   R      G+R++   D  ++ +   +  + L  I S
Sbjct: 663 QEIIITTKYGQSLRFHEEQIPLRHRNALGVIGMRMKD--DDIVTSMTVIEEGKHLLTITS 720

Query: 715 AGRSYNRSEN 724
           +G  Y +  N
Sbjct: 721 SG--YGKRTN 728


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/611 (38%), Positives = 358/611 (58%), Gaps = 51/611 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KP HRRI++AM E G      ++KSAR V
Sbjct: 25  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPV 84

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGDSAAA RYTE RM + 
Sbjct: 85  GDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKP 144

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 145 AAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 204

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI+NP++S E L++Y+ GPDFPTG  I+  R    ++Y  GRG   +RA+  +E
Sbjct: 205 IDATLALIENPDLSSEALMDYVPGPDFPTGAQIM-GRGGARKAYLEGRGSVIIRAKTRIE 263

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318
           E+ +  + I++ EIPYQV K+ +IEK+A+L+  K++  +  I DES    VR+V+  K R
Sbjct: 264 EIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELK-R 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  + ++T F  NM  L+ GR P+ + L   L  ++A R EV+ RR+++
Sbjct: 323 DATADVVLNQLYRFTPLQTSFGCNMLALNGGR-PEQLTLRDFLSHFIAFREEVVARRTAY 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR-------------- 420
            ++    R  IL GL +A  N+DE++A IR+   P      +M  R              
Sbjct: 382 ELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLID 441

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L  +     ++L S +
Sbjct: 442 DPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRE 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+REV+   +       RRT   + +        + +IE+E + V I++ G+
Sbjct: 502 RIMAIIATELREVRAAHAVP-----RRTEIVDWA---GDLDDEDLIEREDMVVTITSGGY 553

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           I        R+ +     L+++  KE D +     A+T  ++L  +TDG  Y+L    L 
Sbjct: 554 IKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLP 613

Query: 581 LSGR-GHGEAI 590
           L+GR   G+AI
Sbjct: 614 LAGRTSKGKAI 624


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/661 (37%), Positives = 376/661 (56%), Gaps = 69/661 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 17  QDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 77  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 137 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L+ YI GPDFPT  +I   R+ I E+Y+ GRG   VRA
Sbjct: 197 NLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVV EIPYQV K++LIEKIA+L+  K+I  +  I D S +D   +  
Sbjct: 256 KAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITDLSDKDGMRIEI 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++  F +N+  L  G+ P+++ L  +++ ++ HRREV+ R
Sbjct: 316 KIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQ-PKLLNLKQLIEAFVLHRREVVTR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ + ++    R  IL+GL IA  N+D II +IR    P P    R              
Sbjct: 375 RTVYELRKARERAHILEGLAIALANVDPIIELIRQ--APNPETAKRELIAQPWKLGHVAD 432

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q  AIL+LRL+ L  L   +I  E   LL
Sbjct: 433 MLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYQKLL 492

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L S ++    I  E+ +++E F+       RRT   E++ +      + +I
Sbjct: 493 EVIGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSGDINLEDLI 544

Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S
Sbjct: 545 AQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFS 604

Query: 568 TDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620
           + G+ Y L    L  + RG  G  I  ++ L+ N+ I     VTA+  D   K +V+++ 
Sbjct: 605 SRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYEED---KFVVMATA 661

Query: 621 G 621
           G
Sbjct: 662 G 662


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/677 (35%), Positives = 376/677 (55%), Gaps = 57/677 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KS+R 
Sbjct: 25  SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           V + +G+ HPHGD ++YD+L R+ Q F    PL+ GQGNFG++DGD  AA+RYTE RM +
Sbjct: 85  VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A+ +L+ +D+D VDF+D Y+ +  EP+V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I++P+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVILRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317
           EE+ +  + IVV E+P+QV K+ +IEKIA+L+  K++  +  I+DES    VR+V+  K 
Sbjct: 264 EEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++  +F  + ++T F  NM  L+ G+ P+ + L   L+ ++  R EV+ RR++
Sbjct: 323 RDATPEVVLNQLFRFTQLQTSFGCNMLALNGGK-PEQLTLRDFLRHFITFREEVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F ++    R  IL GL +A  N+DE++A IR                             
Sbjct: 382 FLLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLV 441

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S 
Sbjct: 442 DDPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I+ E+  VK+ F+       RR+   E S        + +IE+E + V I+  G
Sbjct: 502 DRIMAIISDELTAVKDEFAVP-----RRSEIVEWS---GDMDDEDLIEREDMVVTITQSG 553

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           W         R  K     LS +  K+ D +     A+T  ++L  +TDG AY L    L
Sbjct: 554 WAKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRL 613

Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
            L GR   G+AI  ++ +     I      D         +++  +SKG+      S+  
Sbjct: 614 PLGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFT 673

Query: 633 ANTRKGKTFLKVSSEEK 649
              R GK  +K   E++
Sbjct: 674 NVMRNGKIAMKFEGEDE 690


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/692 (35%), Positives = 392/692 (56%), Gaps = 30/692 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E GL     +KKS
Sbjct: 16  KIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYKKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ + HPHGD +VY+++VRLAQ F  RYPLI G GNFG++DGDS AA RYTEAR
Sbjct: 76  AVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF D Y+    EPVV P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 136 LSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID P+  ++++ + I GPDFPT G+I+  RE I  +YR GRG  +VRA+
Sbjct: 196 LGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLII-GREGIRNAYRTGRGSIKVRAK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +  G   IVVTEIPYQV K+RL++ I +L+  K+I  + D+RDES      ++  
Sbjct: 255 AQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRIVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  ++  + M+  F + M  L  GR P+V+ L  +L  +L H++EV+ RR
Sbjct: 315 LRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGR-PRVLNLREMLTLYLDHQKEVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +   + R  I+ GL IA   +DE+I IIR   NE +    ++ RF L++ Q  AI+
Sbjct: 374 TRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMERFQLSDKQAKAIV 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E   L         +L S  + +  +  E+ E+K  F+     
Sbjct: 434 DMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRDELLEIKRKFADP--- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             RRT   ++   ++    + +I +E I V +++RG+I        RS K     + A+ 
Sbjct: 491 --RRT---QIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMG 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602
            +E D ++      T   +L  +  G+ + L    +  +GR   G  +  L+ LN  + I
Sbjct: 546 TREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETI 605

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            TA +     +    LL+ + KG        E   + R G   + +  ++ +  V++  G
Sbjct: 606 -TAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEG 664

Query: 659 DH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           ++ V +V    K + F  D++  M R  +GVR
Sbjct: 665 NNEVMLVTRRGKAIRFGEDEVRPMGRAARGVR 696


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 359/612 (58%), Gaps = 63/612 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++ +   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  + + +KKSARI
Sbjct: 10  SIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  ++++ VDF   Y+E + EP V P+K P LL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+A+IDNPEI I +L+E+I GPDFPT  II  +R  I E+Y  GRG   +RAR  +
Sbjct: 190 VLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGAR-GIAEAYATGRGRVHIRARADI 248

Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
           E     G   IVV E+PYQV K+RL+EKIAEL+  K+I  +  +RDES +D +R+V+  +
Sbjct: 249 ETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIVLR 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++ +++  + M+T F +NM  +  G+ P+ + L  +L  ++ HRREV+ RRS
Sbjct: 309 -RGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQ-PRTLNLKDVLAAFIRHRREVVTRRS 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  IL+GL  A  NIDE+I +I+    P   K  ++SR             
Sbjct: 367 IFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGE 426

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+  Q  AIL++RL  L  LE+ +I  E   +L   +
Sbjct: 427 AGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVL---D 483

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            I  LL       N +A  IR+  E+ + + + G  R T    +  D  TL+  +I +E 
Sbjct: 484 LIGELLAILSDPDNLMAV-IRD--ELVAINAEYGDERRTEILANHLD-LTLED-LITEEE 538

Query: 520 ITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+ ++ +  +           +A   K+ D ++    A+T D +L  S+ G 
Sbjct: 539 MVVTLSHAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGK 598

Query: 571 ----KAYTLPAG 578
               K Y LP G
Sbjct: 599 VYWKKVYELPQG 610


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/633 (37%), Positives = 371/633 (58%), Gaps = 41/633 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +A + +IDN      E ++E++LE I GPDFPTGG I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S+ E 
Sbjct: 246 IRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + + ++ ++L+  ++  + ++  F + M  L +G+ P+VM +  +L  +L H+
Sbjct: 306 MRIVIELR-KDVNANVLLNQLYKHTQLQDTFGVIMLAL-VGKQPKVMNILELLGYYLKHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RR+ + +     R  ILKGLLIA  NIDE+I IIR        K  ++ +F L +
Sbjct: 364 EDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEKFELDD 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  +++ E   L+A+ E+++++L   K     I  EI  +K+ 
Sbjct: 424 VQAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAILADEKLLLGVIREEILVIKDK 483

Query: 486 FSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539
           +        RRT+      ++S  D       +I KE I + ++  G+I+ +   +    
Sbjct: 484 YGDD-----RRTSIGFDEYDISMED-------LIPKENIVITMTKLGYIKRMSDDTFKAQ 531

Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                 +  +   + D ++     +T   I+  +  G+ Y L    +   S    G AI 
Sbjct: 532 NRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEASRTSRGTAII 591

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
            L+ L   + I        Y     L++ + KG
Sbjct: 592 NLLQLMPGEKITAVIPIDYYRDQDYLIMATKKG 624


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V    + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V    + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +    S            
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 374/629 (59%), Gaps = 38/629 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 4   NDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+IDGDS AA 
Sbjct: 64  KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAAM 123

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M+++A  +L+ ++++ VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT
Sbjct: 124 RYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMAT 183

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L+DNP+ + E L++ + GPDFPTGG+++  +  I ++Y  GRG 
Sbjct: 184 NIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVM-GKSGIRKAYETGRGT 242

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             VRA+  +EE   G   IVV EIPY V K++LIE+IA+L   K I  + D+ DE+  E 
Sbjct: 243 IVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDREG 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  + R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+
Sbjct: 303 MRIVIDVR-RDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKEILQYYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  I+ GL IA  +IDEII IIRN       K  ++  + L++
Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYGLSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I++E   L+A       +L + +++ NQI  +  E+ EI
Sbjct: 421 RQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDIL-AHQERINQIIYD--ELLEI 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---S 537
             K    G +R T  +V        +  + E+E I V +++ G+I+ L     KS     
Sbjct: 478 QKK---FGDKRRTELQVGDITNIEDEDLI-EEESIIVTLTHNGYIKRLPVDEFKSQHRGG 533

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLS 582
             +  +   + D ++  + + T D +L  +  GK Y++               P  NLL 
Sbjct: 534 RGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQGIPIINLL- 592

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           G  + E I  +I+++H  +    F++ +T
Sbjct: 593 GIDNKEKISAVINVSHETNDDDKFLFFTT 621


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 265/732 (36%), Positives = 407/732 (55%), Gaps = 84/732 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YLAYA+S I  RA+PD+RDG KPVHRR + AM+E+G D+  A+KK
Sbjct: 6   QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L+ +++D VDF   Y+E +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+I+NPEI++++L+EYI GPDFPT  II   R  I+++YR GRG   VRA
Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAII-NGRAGIIQAYRTGRGRIYVRA 244

Query: 255 RWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  +E  E  R    I++TEIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V
Sbjct: 245 KADIEVNEKTR-RETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+   ++++ ++F  + +++ F +N+  L  G+ P+++ L  ++  +L HRREV+
Sbjct: 304 VIEIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQ-PKILNLQQLIHHFLRHRREVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------- 420
            RR+ + ++    R   L+G  IA  NIDEIIA+I+   +  + +  +V+R         
Sbjct: 363 TRRTIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQ 422

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+  Q   IL LRL  L  +E  +I +E    L
Sbjct: 423 MLDRAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKL 482

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E  +   +L    +    I  E+  V E F        RRT   E S  D     + +I
Sbjct: 483 EEIAEYQDILGDLTRLMTVIREELEAVVEEFGDE-----RRTEIIE-SLHDLTI--EDLI 534

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V ISN G+ ++         +   +  SA   K+ D ++  L A T   IL  +
Sbjct: 535 TEEDRVVTISNGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFT 594

Query: 568 TDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
             GK Y L    + ++GR   G  +  L+ L   + I        +  L V     + F+
Sbjct: 595 NLGKVYWLKVYQIPVAGRNSRGRPVINLLPLGEGERI--------SSILPVEEYSADKFV 646

Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHV---AVVGENRKLLIFSIDQIP 679
           +  +   AN    KT L+  S  +   ++ V  V GDH+   A++ ++  +++ S     
Sbjct: 647 IMAT---ANGTVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLS----- 698

Query: 680 EMSRGKGVRLQS 691
             S GK VR  S
Sbjct: 699 --SEGKAVRFAS 708


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/766 (34%), Positives = 420/766 (54%), Gaps = 44/766 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  +K
Sbjct: 3   ERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RYTE
Sbjct: 63  KSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+IP 
Sbjct: 123 ARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +A LA+  NP+ISI +L+E YI GPDFPTGG I+  + +I ++Y  G G   +
Sbjct: 183 HNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYIL-GKSAIKKAYETGNGLIVM 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE G     I+VTE+PY V K+R+IEK+++L+  K+I  + +IRDES  D   V
Sbjct: 242 RAKTEIEEKG-NKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R + P++++  ++ L+ ++T F  N   L +   P+ + L  ++  +L H+ EV+
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIAL-VNNEPKTLNLKEMISLYLEHQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ FR+   + R  IL+GL  A   ID II +IR+    D  +  ++  F++++ Q  
Sbjct: 360 RRRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEEFNMSDKQAK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ +   
Sbjct: 420 AIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
               +RRT   E+ +       + +I  E + + ++N G+I+ +   +          + 
Sbjct: 479 ----KRRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYIKRMPVDTYKSQNRGGRGIK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599
            +     D +   ++  T D +L  +  GK Y L   N+   GR   G  +  L+DL+  
Sbjct: 532 GMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLDLDKE 591

Query: 600 QDIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + I +    D       S   L  V+  G    V  +E     + GK  + +   +++  
Sbjct: 592 ESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQLVQ 651

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKI-C 706
           V   +G D + +   N KL+ F    +  M R     KG+ +    DG  S+V+      
Sbjct: 652 VKLTSGNDQILIAASNGKLVRFEESNVRPMGRISSGVKGINV----DG--SEVVGMTTDK 705

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           EG   +    R Y +        L  RGG G        R+GK ++
Sbjct: 706 EGKYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVA 751


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/699 (34%), Positives = 404/699 (57%), Gaps = 35/699 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  +      KKSA
Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD S+Y+++VR+AQ F  R PLI G GNFG+IDGD AAA RYTE+R+
Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGMAT++P HN+
Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           QE+  A   +IDNP  ++E L+  + GPDFPTGGII+ + + I ++Y+ GRG   +R++ 
Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGT-DGIKDAYKTGRGTLTIRSKV 370

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
            +E  GR G   +V+TEIPYQV KS L E+IA+ +  K+I  + D+RDES  + +RIV+ 
Sbjct: 371 HIENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVID 430

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++ P +++ +++  + ++T F + +++  +  VP+ + L  +++ ++ H+++V+ R
Sbjct: 431 LKQGAV-PQVVLNNLYKRTQLQTSFSV-IDIALVDGVPRTLSLHDMIRYYIKHQQDVVTR 488

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +    +RV IL+GLLIA  NIDE++ IIR   ++ + K  M  RF + + Q +AI
Sbjct: 489 RTKFDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFGIDDIQGEAI 548

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  L   ++ +++D L  +   +  LL + ++    I  E+ ++ E ++    
Sbjct: 549 LQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASP-- 606

Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
              RRT   ++S  +   L  + +I +E + + +++  +I+ L        K     +  
Sbjct: 607 ---RRT---KISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQG 660

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL---N 597
           L  K+ D ++    A T D +L  +  GK Y L    L  G     G A+  ++ L    
Sbjct: 661 LSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDE 720

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           H   ++T   +     L+  + +G       +E   + R G   + +   +++  V +V 
Sbjct: 721 HPTAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVC 780

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691
            G+ + +     K ++FS + +   SR     KG+ L++
Sbjct: 781 EGNRIILCTSAGKAIMFSEEDVRPTSRNTSGVKGISLKN 819


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q  
Sbjct: 360 VRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK    K 
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L        K     + 
Sbjct: 477 ADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                  D ++  +   T D +L  +  G+ Y                LP  NLL     
Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           GE IQ +I+    +D+   + + +T + +V  +  + F
Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 258/689 (37%), Positives = 400/689 (58%), Gaps = 63/689 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   +++ Y+ YA+S I  RAIPD RDG KPV RRI++AM +MGL     F KSA
Sbjct: 3   ITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKSA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG V+G  HPHGDQ+VYD+LVR+AQ F  RYPLISGQGNFG+IDGD  AA RY+EA++
Sbjct: 63  RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAKL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L+ ++E+ VDF   ++    EP + PSKFPN+L NG+SGIAVG+ATSIP HN+
Sbjct: 123 SKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C A + L  NP IS E++++ I GPDFPTGG IVE+ + ++E Y  GRG  RVRA+ 
Sbjct: 183 KEVCSALIELAKNPNISTEEIMKRIKGPDFPTGG-IVENYQELIEYYHTGRGHVRVRAKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            VE++  G   IV+TEIPYQV K+ LI+++AEL+   ++  + +IRDES  E +RIV+  
Sbjct: 242 HVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIEL 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R      ++E ++  + +   FP+N  VL +   P+ + +  +L+E+L HR EV+ RR
Sbjct: 302 K-RDAQGQKVLEKLYKHTALRKNFPINFVVL-IDNQPKQVGIKELLQEFLRHRLEVILRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAIL 432
           +   ++  + R+ I++GL  A  ++D++I  IR ++D P  K  ++  ++L+E Q +A+L
Sbjct: 360 AKHHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMKNYTLSERQANAVL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E   L+   E    L++S   +  +I   I+E++EI  +    
Sbjct: 420 DMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISS---EEERIKVFIQEMEEIVKEFPSP 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-----HSVDLSALHFKE 547
            R      E     +            ITV+I + G I  L+        VD+  + F E
Sbjct: 477 RRSFVLGFENEEVGQ------------ITVIIYSNGKIMPLEEMQEEGQVVDVLDVPFSE 524

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
           G              + ++S  G+ Y +     L G      EA         ++ +V A
Sbjct: 525 G--------------LFMVSNRGRVYWIAGSQALQGSKVSFKEA---------DESVVGA 561

Query: 606 FV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGD 659
           FV   ++ ++++++ +G    +   +    T +G + +K S EE    VVKV      GD
Sbjct: 562 FVRSQASHRIILITKRGYVKKIPIVDFEYKT-QGMSIIKFSEEEDE--VVKVLQSPEEGD 618

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            + ++    K+L F I  IP  + G KGV
Sbjct: 619 -ILLLTRKGKMLRFPIRDIPPATVGSKGV 646


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/702 (34%), Positives = 408/702 (58%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E +R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +     +  ++SRF L+E Q  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K    K 
Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L        K     + 
Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599
                + D ++  +   T D +  ++  G+ Y L A  +   GR   G  I  L+ L+  
Sbjct: 533 GTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEG 592

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + + T        D    L  V+ +G      ESE     + G   L +   +++  V++
Sbjct: 593 EIVQTIISQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQNGLKALNLKDGDELINVIR 652

Query: 656 VTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
             G++  ++G      + F+   +  MSR   GVR  + ++G
Sbjct: 653 TNGNNDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREG 694


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 361/629 (57%), Gaps = 51/629 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +M E G ++   ++KS
Sbjct: 16  DIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHG+QSVYD+LVR+ Q F  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 76  ARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V + +L  + +D VDF+  Y+  ++EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +AL+D+P +  E LL+YI GPDFPTG +I+  R  I ++Y  GRG   +RAR
Sbjct: 196 LGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIM-GRSGIRQAYMTGRGSIMMRAR 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E V +    I++TEIPYQV K+ +IEKIAEL+  KR+  + +IRDES  E +R+V+ 
Sbjct: 255 ATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEIRDESDREGMRVVIE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++ +++ ++ ++T F +NM  LS GR P VM L   L  ++A R EV+ R
Sbjct: 315 VK-RDAQADVVLNNLYRMTPLQTSFGVNMVALSGGR-PAVMTLHDTLTAFIAFREEVVSR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----------------------- 411
           R+ F ++    R  +L GL IA  NIDEII +IR                          
Sbjct: 373 RTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLMERHWPAKDVASLV 432

Query: 412 ----KPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                P+ V+ S   + L+  Q  AIL+LRL+ L  L   +I  ELD L  E  +   +L
Sbjct: 433 ALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDKLALEIAEYLEIL 492

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    I  E+  ++  F+       RRT   E++        + +I +E + V +S
Sbjct: 493 ASRPRMRAIIREELLALRAEFNTP-----RRT---EITEGFGDLDDEDLIAREDMVVTVS 544

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G++        R+ +      SA+  ++ D +     A T   +L  S+ G+ Y L  
Sbjct: 545 HAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKV 604

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
             L +   +  G+A+  ++ L  ++ I +
Sbjct: 605 WRLPAAAPQARGKALINILPLQPDERITS 633


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 267/753 (35%), Positives = 423/753 (56%), Gaps = 48/753 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E Y+ Y++S I  RAIPD+RDG KPV RRI++AM E+GL   A  KK ARIVGEV+GK
Sbjct: 13  LVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKCARIVGEVLGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+LVRLAQPF  RYPL+ GQGNFG+ID D  AA RYTEA+++++AE +LQ
Sbjct: 73  YHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAKLSELAEEMLQ 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V     +++   EP V PSK PNLL NG +GIAVGMATSIP HN+QE+  A   
Sbjct: 133 DLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHNLQEVVNAIEM 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NPE +I  LL  I GPDFPTG +IV   E + E Y  G+G   +R +   EE G+  
Sbjct: 193 LIENPEATIADLLRIIKGPDFPTGALIVNGNE-LTEVYATGKGRIVLRGKVHFEE-GKRF 250

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--LLEDIRDESAED-VRIVL-FPKNRSLD 321
             +V+TEIPY V K+ LIE+IA    A++ P  ++++IRDES ++ +RIV+  PKN   +
Sbjct: 251 NNVVITEIPYNVSKAALIEEIASY--AEKNPKMMIKNIRDESDKNGLRIVVEIPKN--AN 306

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ +++  + ++T F + M V+  GR P++M L  +LK ++ HR +V+ +R+ + ++
Sbjct: 307 AEIILNNLYKHTSLQTSFSVQMLVID-GRRPKLMNLSQLLKAFIKHRFDVIRKRAEYELK 365

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRS 438
              RR  IL+G++ A   I  ++ I+R     +  M   +   S+T  Q  AIL++RL  
Sbjct: 366 VYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIEALSITNEQAKAILDMRLGR 425

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +++ E   L+ + E +  +L+  ++ +N +  E+ E+K+ ++       RRT 
Sbjct: 426 LTGLEIEKLQGEYSQLIKKIEDVKDILSRDERVYNVMYQELEELKKKYADE-----RRTK 480

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDS 550
              ++ +   T  + +I  E + + ++ +G+++  SLK +         +      E D 
Sbjct: 481 IENITDSLSYT-PEDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGARTAEDDE 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVY 608
           +     +    + L +++ GKAY L    + L+GR   G+ I+  ++L  ++ ++T   +
Sbjct: 540 ILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTMISF 599

Query: 609 DS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVA 662
           D     L++V+  G        E    T +G   +  S  +   +VV  T      D + 
Sbjct: 600 DEWKGDLVLVTKSGRIKRTPLKEFENTTSRGIRAITFSDSD---VVVSATLSSSESDQII 656

Query: 663 VVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDV-ICFKICEGLTWIDSAGR 717
           +  +N   + F +  + +M R      G+RL+  KD  +  V +  + CE LT I   G 
Sbjct: 657 IATKNGMAIRFPLKDVRQMGRSAMGVIGIRLRE-KDEVVGMVNVPDENCEILT-ITVRGF 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 ND    +  RGGVG     G  ++G+ 
Sbjct: 715 GKRTPVNDY--RVQSRGGVGIKTMPGVEKAGQL 745


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 371/674 (55%), Gaps = 57/674 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKAYRKSARAV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E 
Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEA 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI+NP+++ E L+EYI GPDFPTGGI++  R    ++Y  GRG    RA+   E
Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVITRAKTHTE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + I+++EIPYQV KS +I++IAE    K+I  +  ++DES  + VR+V+  K R
Sbjct: 265 EIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ GR P+ + L   L  +L  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLRRFLTSFLDFREDVVIRRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR--------------- 420
            +     R  +L GL +A  N+DE++A IR + D P  +  +++R               
Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEILPFILLID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++  ++L S +
Sbjct: 443 DPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLAILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ E K +F+       RRT   + S        + +IE + + V ++  G+
Sbjct: 503 RIMQIIRDELAECKTLFAVP-----RRTQIVDWS---GDMEDEDLIESQDMVVTVTETGY 554

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I        R+ K     +S    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 SGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D         +++  +S G       S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSE 647
             R GK  +K   E
Sbjct: 675 VMRNGKIAMKFEGE 688


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/672 (36%), Positives = 368/672 (54%), Gaps = 68/672 (10%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G +    S  +  E    ++L   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +M
Sbjct: 9   GNNGTGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G      +KKSAR+VG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++
Sbjct: 69  QENGFTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSM 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTEAR+ + A  +L+G+DED VDF   Y+E   EP V P+ FPNLL NG +
Sbjct: 129 DGDPPAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGAN 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP+HN  E+ +A LALI  PE S+E L++ + GPDFPTG +I+  R  I  
Sbjct: 189 GIAVGMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALIL-GRAGIRS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RAR  +EE+  G   I ++EIPYQV K+ LIE+IAEL+ AK+I  + D+
Sbjct: 248 AFETGRGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDL 307

Query: 302 RDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDES    +RIV+  K +   P++++  ++  ++++T F +N   L  GR PQ M L   
Sbjct: 308 RDESDRSGLRIVIELK-KDATPEVVLNHLYRYTNLQTSFAVNFLALHQGR-PQQMGLRQA 365

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------- 409
           L+ ++  R EV+ RRS FR+     R  +L GL IA  NIDE+I +IR            
Sbjct: 366 LQAFIDFREEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTAL 425

Query: 410 -----------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                            +D    V      LTE Q   IL LRL+ L  LE  +I +ELD
Sbjct: 426 MARDWPVADVGPLLALVDDSGNIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELD 485

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + A   ++  +L S  ++   +A E+R V+   +             E+         +
Sbjct: 486 EVAARIRELLEILASHPRRMELMADELRAVRAQIASP--------RLSEIVDGLADQDDE 537

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           +++E   + V ++  G++        R+        S+ + ++ D +  + +AHT   +L
Sbjct: 538 SLVEPGLMVVTLTRDGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVL 597

Query: 565 LLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAF--------VYDS 610
             ++ G     K + LP AG    GR   + +QL       ++ VTA         ++D+
Sbjct: 598 FFTSRGMAFREKVWKLPEAGPTARGRSLRQLLQL-----REEEYVTAVLPLPQDEGLWDN 652

Query: 611 TCKLLVVSSKGN 622
              L+  +S+GN
Sbjct: 653 -LHLVFATSEGN 663


>gi|332293377|ref|YP_004431986.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/609 (37%), Positives = 372/609 (61%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG I    + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  GR P+++ L  ++  ++ HR  V+ R
Sbjct: 303 VIKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHVVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543
            G  R +  E +  D +     +I  + + + ISN G+I+  SL  +       V   A 
Sbjct: 477 -GDERRSVIEYAGGDVSITD--LIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             +  D L+          +L  +  GK      + +P G+  S    G AIQ LI++  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEQ 590

Query: 599 NQDIVTAFV 607
           + D V AFV
Sbjct: 591 D-DEVKAFV 598


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q  
Sbjct: 360 VRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK    K 
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L        K     + 
Sbjct: 477 ADARRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                  D ++  +   T D +L  +  G+ Y                LP  NLL     
Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           GE IQ +I+    +D+   + + +T + +V  +  + F
Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 368/636 (57%), Gaps = 67/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSAR+V
Sbjct: 11  VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI NPE++I +L++YI GPDFPT  II   ++ I ++Y+ GRG   +RAR  +E
Sbjct: 191 VNGCLALIQNPELTITELMDYIPGPDFPTAAII-NGKKGIEQAYQTGRGKVYMRARADIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K 
Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  ++++ +++  + ++T F +NM  L +   P+   L  +L+E++ HRREV+ RR+ 
Sbjct: 310 GDVG-EVILNNLYSQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F ++    R   L+GL IA  NID II +IR    P    V+                  
Sbjct: 368 FDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLDKA 427

Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ ++E Q  AIL+LRL  L  LE  +I +E  +LL    
Sbjct: 428 GEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLELIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L + ++    I  E+ E+KE +        RRT   E++ A      + +I +E 
Sbjct: 488 ELLFILANPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISLEDLINEEN 539

Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++  +L  +          SA   K+ D ++  L A+T D IL  ST G 
Sbjct: 540 VVVTLSHEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
               K Y LP   L S    G+ I  L+ L  ++ I
Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 392/677 (57%), Gaps = 42/677 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  + + +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE++L+ + GPDFPTGG I+  +  I E+YR GR  
Sbjct: 187 NLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTII-GKLGIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDES  + 
Sbjct: 246 IKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDESDREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+V+ L  +LK +L H+ 
Sbjct: 306 MRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLAL-VDNQPKVLNLYDMLKYYLLHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL+IA  NID +I+IIR   N    K  +++ F+L+E 
Sbjct: 365 EVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAEFALSEA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++EL  L  + ++  ++L   K     I  EI E+ + +
Sbjct: 425 QAQAIVDMRLRALTGLERSKLEAELKELHEKIKEYKAILADKKLLLGVIKNEISEIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
                   RRT+   +   +     + +I  EP  +  +N G+++ +   +         
Sbjct: 485 GDD-----RRTS---IGYDEYDISMEDLIPDEPCVIARTNLGYVKRMTPDNFKSQHRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  +   + D +K      +   +   +  G+AY L A  +   S    G AI  L+ L
Sbjct: 537 GIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKAYEIPEASRTSRGTAIINLLQL 596

Query: 597 NHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSE 647
              + I TA V         T  L + + KG   IV+++ +   AN RK G   + +  +
Sbjct: 597 APGETI-TAVVPVKIDTLQDTDYLFMATKKG---IVKKTPVKEFANIRKTGIQAINLRED 652

Query: 648 EKMKLVVKVTGDHVAVV 664
           +++ + VK+T D   ++
Sbjct: 653 DEL-IEVKLTDDQAEIL 668


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R+   ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV+
Sbjct: 302 IEVR-RAASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q  
Sbjct: 360 VRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK    K 
Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L        K     + 
Sbjct: 477 ADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                  D ++  +   T D +L  +  G+ Y                LP  NLL     
Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           GE IQ +I+    +D+   + + +T + +V  +  + F
Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 356/613 (58%), Gaps = 67/613 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP ISIE L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIY-GKAGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F  + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIVAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409
           + F ++    R  IL+GL +A  NID II  I+                           
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423

Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                         ED  +P  +    + L+  QV AIL LRL  L  LE+ ++++E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L +  ++ ++LN     +N +   I+ E+  I  +  D   RRT   E SR D +  ++
Sbjct: 484 ILGQIAELTAILND----FNLLMAVIKEELALILQQYGDA--RRTAIVE-SRIDFS--RE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDR 562
            +I +E + + +S  G+ ++  L  ++         SA   KE D ++  I    H T  
Sbjct: 535 DLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHAT-- 592

Query: 563 ILLLSTDGKAYTL 575
           +L  +  GK Y L
Sbjct: 593 VLCFTNVGKVYRL 605


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 258/721 (35%), Positives = 411/721 (57%), Gaps = 43/721 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V A+ +   ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +M E G+     +KKSA
Sbjct: 73  VTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKESGITHDKPYKKSA 132

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYDS+VR+ Q F  RYPLI GQGNFG+IDGD AAA RYTE RM
Sbjct: 133 RVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDGDEAAAMRYTEVRM 192

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L  ++++ V FR  Y+    EP V P+K PNLL NG++GIAVGMAT++  HN+
Sbjct: 193 DRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGIAVGMATNMAPHNI 252

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LIDNPE  + +L+  + GPDFPTG  I+ +   I  +Y  GRG  ++RA  
Sbjct: 253 SEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGT-AGIRSAYTTGRGPVKIRAVA 311

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            ++E+ +    I+VTE+PYQV K+R+IE IA+L+  K I  + D+RDES  E +R+V+  
Sbjct: 312 EIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDESDREGIRVVI-E 370

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  +  +++  ++  + MET F + +N+  +   PQ + L  +L+ +L +R E++ +R
Sbjct: 371 LSKGTNARVVLNQLYKHTQMETTFGV-INLALVDGKPQELNLKQLLEIYLEYRMEIVQKR 429

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NID ++A+I+   N D+ +  ++  F+L E Q  AIL
Sbjct: 430 TLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLMDNFTLDEVQAKAIL 489

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  EL+NL+    ++  +L S + ++  I  E+  +KE +      
Sbjct: 490 DMRLQRLTGLETKKILEELENLIKLIAELKKILESDELKYEIIRTELLGLKEKYGDV--- 546

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALH 544
             RRT     +   +    + +I +  + V I+N G+I+   L ++S+       +  + 
Sbjct: 547 --RRTKIVHYT---EEVTDEDLIPEADVVVTITNSGYIKRIPLDTYSMQRRGGRGIIGME 601

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            KE D ++    + T + IL  +  G     K Y +P G   S +  G+AI  L++L   
Sbjct: 602 MKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEG---SRQSRGKAIVNLLELREG 658

Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +V A +    +     LL+ +  G       SE   N RK    + VS +E  +LV  
Sbjct: 659 E-MVNAMIPVKEFAEDRYLLMATRAGTTKKTPLSE-FRNPRKA-GIIAVSLDEGDELVKV 715

Query: 656 VTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           +  D    V +V +  K + FS D +  M R  +GVR     DG   +V+   + +  T 
Sbjct: 716 LLTDGKQEVLMVSKKGKAIRFSEDDVRPMGRTARGVRGMIL-DGPEDEVVSMDLVDETTT 774

Query: 712 I 712
           +
Sbjct: 775 L 775


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 353/601 (58%), Gaps = 51/601 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RAIPDLRDG KP HRRI++AM E G      ++KSAR VG+V+GK HPH
Sbjct: 5   YLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++YD+LVR+AQ F    PL+ GQGNFG++DGDSAAA RYTE RM + A  +L  +++
Sbjct: 65  GDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLADIEK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LALI+N
Sbjct: 125 DTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P++S E L++Y+ GPDFPTG  I+  R    ++Y  GRG   +RA+  +EE+ +  + I+
Sbjct: 185 PDLSSEALMDYVPGPDFPTGAQIM-GRGGARKAYLEGRGSVIIRAKTRIEEIRKDRFAII 243

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMES 328
           + EIPYQV K+ +IEK+A+L+  K++  +  I DES    VR+V+  K R    D+++  
Sbjct: 244 IDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELK-RDATADVVLNQ 302

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F  NM  L+ GR P+ + L   L  ++A R EV+ RR+++ ++    R  
Sbjct: 303 LYRFTPLQTSFGCNMLALNGGR-PEQLTLRDFLSHFIAFREEVVARRTAYELRKARERSH 361

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------------------ 420
           IL GL +A  N+DE++A IR+   P      +M  R                        
Sbjct: 362 ILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDDG 421

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            ++L+E Q  AIL+LRL+ L  +   ++  EL  L  +     ++L S ++    IA E+
Sbjct: 422 TYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATEL 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
           REV+   +       RRT   + +        + +IE+E + V I++ G+I        R
Sbjct: 482 REVRAAHAVP-----RRTEIVDWA---GDLDDEDLIEREDMVVTITSGGYIKRTPLAEFR 533

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589
           + +     L+++  KE D +     A+T  ++L  +TDG  Y+L    L L+GR   G+A
Sbjct: 534 AQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKA 593

Query: 590 I 590
           I
Sbjct: 594 I 594


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/463 (43%), Positives = 307/463 (66%), Gaps = 8/463 (1%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 283 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 342

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++  +EL+L 
Sbjct: 343 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 402

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 403 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 462

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 463 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 519

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 520 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 578 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 637

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 638 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 697

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           E +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +    S            
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILTSPERLMEVIREELERVKSEFGDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/722 (36%), Positives = 401/722 (55%), Gaps = 53/722 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI+ AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P+ SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  ++R
Sbjct: 185 HNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  +EE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D +R+
Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 304 VLELK-KGESSEIVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRTEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +D+++  IRN D     K  ++  F  TE Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIENFGFTEQQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E+++++++   
Sbjct: 422 VAILELRLYQLTGLESEKIQKEYDELINKIAYYKRVLADEGLVKDIIRNELQDLQKLHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RRTT  E   AD     + +I  EP+ + IS   +++ +        K     +
Sbjct: 482 P-----RRTTI-EFD-ADDVRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584
           S    K+G D LK    A T D +L+ +  G+ Y      LP G          N L G 
Sbjct: 535 SGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
             GE +  ++++ + ++    F++ +T + +V     +AF        +N R KG   L+
Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKQGVVKKVSLDAF--------SNPRKKGIRALE 644

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++   V++T +   V+   R    + F  D++  M R  +GVR  S K+     V
Sbjct: 645 IDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704

Query: 701 IC 702
            C
Sbjct: 705 AC 706


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 360/631 (57%), Gaps = 51/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+G  +KK+
Sbjct: 6   NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  G+G   ++ +
Sbjct: 186 LGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIIQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             +E++  G   I++ EIPYQV K++LIE+I ELI  K+I  + D+RDES +  +R+ + 
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +R+EVL R
Sbjct: 305 LK-KQVSHQVILNQILGLTPLRTSFSINTLVLDNNK-PKVMSLPDIISTFVEYRKEVLTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ FR++ +  R  +  G+ IA LNID++IAIIR+                         
Sbjct: 363 RTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREM 422

Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                D    V+ +   LT  QV +IL ++L+ L  LE+ +++ +L ++++  ++   LL
Sbjct: 423 IELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELL 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            + +     I    +E+K   +       RRTT   +  +   T  + +I KE + V ++
Sbjct: 483 KNKESLLQLIKDGFKEIKAKLAVP-----RRTT---IDYSHFETDIEDLIPKEDMVVTVT 534

Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             G+I+  K  +                KE D +      +T   +L  S  G+ Y L  
Sbjct: 535 MSGYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594

Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
             L  G     G ++  +  L+ N+ I +  
Sbjct: 595 YKLPLGEPTSRGRSLVNIFPLSENESITSVM 625


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 262/722 (36%), Positives = 403/722 (55%), Gaps = 53/722 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D +R+
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISVWVRHRTEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +D+++  IRN   ++  K  ++ +F  TE+Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEKFGFTEHQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++   
Sbjct: 422 IAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RRTT      AD     + +I  EP+ + IS   +++ +        K     +
Sbjct: 482 P-----RRTTI--EFDADDIRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584
           S    K+G D LK    A T D +L+ +  G+ Y      LP G          N L G 
Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
             GE +  ++++ + ++    F++ +T   +V     +AF        +N R KG   L+
Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKHGVVKKVALDAF--------SNPRKKGIRALE 644

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++   V +T +   V+   R    + F  D++  M R  +GVR  S K+     V
Sbjct: 645 IDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704

Query: 701 IC 702
            C
Sbjct: 705 AC 706


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 357/612 (58%), Gaps = 51/612 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    +++KSA+ 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA+ +   + +D VDF D Y+ ++ EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALID+P++SIE+++EYI  PDFPTGGII+  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIIL-GRTGARKAYIEGRGSVIVRAKTNV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV+ EIPYQV K+ +I+KIAE    K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  +F  + M+T F  NM  L+ G+ P+ + L   L  ++  R +V+ RR++
Sbjct: 323 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLRAFLAYFIDFREDVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F ++    R  +L GL +A  NIDEI+A IR+                            
Sbjct: 382 FELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLI 441

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P         ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S 
Sbjct: 442 DDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I  E+ EV+++F+       RRT   + S        + +IEKE + V +++ G
Sbjct: 502 ERIMQIIRDELTEVRDLFAVP-----RRTEIVDWS---GDMEDEDLIEKEDMVVTVTSGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ +     LS++  KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 554 YIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613

Query: 581 LSGR--GHGEAI 590
             G     G+AI
Sbjct: 614 PLGSRTAKGKAI 625


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/711 (34%), Positives = 408/711 (57%), Gaps = 48/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E +R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +     +  ++SRF L+E Q  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K    K 
Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I+ L        K     + 
Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +  ++  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q +I  + +         D+   L  V+ +G     +ESE     + G   L +  
Sbjct: 592 GEIVQTIISQSGHD--------DNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKD 643

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V++  G+   ++G      + F+   +  MSR   GVR  + ++G
Sbjct: 644 GDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREG 694


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/657 (36%), Positives = 373/657 (56%), Gaps = 61/657 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KKS
Sbjct: 7   DVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+NP+++I++L+EYI GPDFPT GII   R+ I++ Y+ GRG  ++RA+
Sbjct: 187 LGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGII-NGRKGIIDGYKTGRGKLKIRAK 245

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE     G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 246 ARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + M++ F +NM  L  G+ P+++ L  +L  ++ HRREV+ R
Sbjct: 306 EVKRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQ-PKLLNLKEMLHAFILHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415
           R+ F ++    R  +L+GL I+  NI+ II +IR+   P                     
Sbjct: 365 RTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAML 424

Query: 416 ----VMVSR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               V V+R              + +T+ Q  AIL++RL  L  LE  +I +E   L+  
Sbjct: 425 EASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +  +    I  E+ +V+  F+ +     RRT   E++ ++     + +I +
Sbjct: 485 ITALLFILENPHRLMEVITEELNDVRANFADA-----RRT---EITASETDLCMEDLITE 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   K+ D +   L A T D IL  ST 
Sbjct: 537 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTR 596

Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
           G+ Y L      L S +  G  I  ++ L   + I        YD    + + ++ G
Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYDDDKFVFMATANG 653


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/445 (44%), Positives = 300/445 (67%), Gaps = 5/445 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 11  QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 71  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 131 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 191 HLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++ 
Sbjct: 250 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 309

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ R
Sbjct: 310 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  AI
Sbjct: 369 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLA 456
           L++RL+ L  LE  +I+ E  NL+A
Sbjct: 429 LDMRLQRLTGLEREKIEEEYQNLVA 453


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHNDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 334/530 (63%), Gaps = 24/530 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K
Sbjct: 8   DKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+YD+LV+LAQ +  RYPL+ G GNFG+ DGD AAA RYTEA
Sbjct: 68  CARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP H
Sbjct: 128 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E SI+++++ I GPDFP G  I+  R  I E+YR GRG 
Sbjct: 188 NLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHR-GIKEAYRTGRGK 246

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            +VRA   +E +  G   IVVTE+PY V K+ LI+KI EL+  KR+  + D+RDES+ E 
Sbjct: 247 IKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDESSREG 306

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K +  + ++L+  ++  + ++  F +NM  L  G VP+++ +  +L  +L H+
Sbjct: 307 IRVVIELK-KDTNANVLLNQLYKHTQLQDTFGVNMLALVDG-VPKILNISQMLGYYLKHQ 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR+       K  ++ RF LTE
Sbjct: 365 EDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIERFGLTE 424

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  ++++E   L+ +   + ++L   K+    I  E+  + + 
Sbjct: 425 IQAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAILADEKKLLGVIKDELLVISQK 484

Query: 486 FS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +   + T LGR           D+ T  + +IE+E I + ++  G+I+ +
Sbjct: 485 YGDERRTALGR---------DVDEVT-DEELIERENIVITMTKLGYIKRM 524


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 264/726 (36%), Positives = 400/726 (55%), Gaps = 66/726 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+ GIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +++ EISIE L+E+I GPDFPT  II   R  I E+YR GRG   + AR 
Sbjct: 188 TEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYICARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++   +++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-RVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEIIAAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+   ++    R +IL+ L IA  NID II +IR    P   K  +++R           
Sbjct: 365 RTILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAML 424

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 425 EAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEK 517
            ++  +L S  +    I  E+  V+E F  +     RRT       A+   +  + +I +
Sbjct: 485 AELLHILGSADRLMEVIREELELVREQFGDA-----RRTDIT----ANSVDINIEDLITQ 535

Query: 518 EPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++    +  +         SA   KE D +   L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAF 624
           G+ Y +    +  + RG  G  I  L+ L  N+    I+    Y+    + + ++ G   
Sbjct: 596 GRLYWMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVNVFMATASGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                E       G   + ++  +++  V   +G D V +     K++ F  D +  M R
Sbjct: 656 KTPADEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMGR 715

Query: 684 -GKGVR 688
              GVR
Sbjct: 716 TATGVR 721


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/640 (36%), Positives = 378/640 (59%), Gaps = 43/640 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 8   DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 68  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 128 ARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A    +DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 188 HNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIVLR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           AR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL  ++ H++EV+
Sbjct: 307 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEVI 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q  
Sbjct: 365 VRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQSQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+  
Sbjct: 425 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD- 483

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
               +RRT     EV     +   + +IE+E + + +SN+G+I+ L        K     
Sbjct: 484 ----QRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584
           +      + D ++  +   T D +L  +  G+ Y                LP  NLL   
Sbjct: 536 VQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
             GE IQ +I++  + D    +++ +T + +V  +  +AF
Sbjct: 595 DDGETIQTIINVKSD-DFHDKYLFFTTRQGVVKRTSVSAF 633


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/693 (35%), Positives = 390/693 (56%), Gaps = 35/693 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+   +  +KSARIVG+V+GK
Sbjct: 80  MKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRKSARIVGDVLGK 139

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD AAA RYTEARM+++A  +L 
Sbjct: 140 YHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEARMSKLAAEMLD 199

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           G+ +D V+F D Y+  + EPVV PS+FPN+L +G +GIAVGMAT IP HN+ E   A +A
Sbjct: 200 GIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPHNLTETINATIA 259

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
              NPEI+ ++L+E+I GPDFPTG  I+  +  I ++Y  G+G   +R++  +EE   G 
Sbjct: 260 FARNPEITTKELMEHIKGPDFPTGATILGVK-GIYDAYETGKGKIPLRSQAKIEEFANGK 318

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             I++TEIPY V+K+ +IEKI EL   K +  + ++RDES  E +RIV+  K +  +  +
Sbjct: 319 SRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVIDVK-KGYNAHI 377

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           L+  ++  S ++T    N+  L  G  P+++ L  IL  +L H+ EV+ RR  F ++   
Sbjct: 378 LLNKLYQKSYLQTNVNANLVALVHGE-PKLLNLKQILSIYLDHQIEVVTRRLKFDLEKAQ 436

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            ++ IL GL IA  NIDE++ II+   N+   +  +  RF+L++ Q  AIL++ LR L  
Sbjct: 437 DKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKRFNLSDRQTKAILDMNLRRLTG 496

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L   ++  E+D L  E   +  +L S +   N I  E+ E+++ F        RRT   E
Sbjct: 497 LNIEKMNLEIDELNKEISYLKGILESREALINLIIDELSEIRDRFGD-----ERRTQIDE 551

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
            + +  +   + +I    I +  S +G+++ +K    ++        S +   + D +  
Sbjct: 552 FTVS--SISDEDLIPVNNIVITTSVKGYVKRMKLEDYNMQNRGGIGVSTMKTYDDDDISK 609

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHNQ-----DIVTA 605
            L   T   ++L +  G+ Y + A  +  G    +    I ++  LN  +      +++ 
Sbjct: 610 ILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQSKGTPFINIIPSLNEKEGEKVVSLLSV 669

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
             Y+    L+ ++ KG       SE  +    GK   ++  ++ +     VT ++  ++ 
Sbjct: 670 DEYNDDHFLVTITEKGVIKKTALSEYESIRSNGKNAFRLKEDDHLVNAFIVTDENEILIA 729

Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRLQSYK 693
            N K ++ FS   +  +SR     +G+RL   K
Sbjct: 730 SNGKNVVKFSSLDLRPLSRNSQGVRGIRLDENK 762


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V    + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   K+ D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/699 (35%), Positives = 389/699 (55%), Gaps = 46/699 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +   F KSARI
Sbjct: 12  TISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARI 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARMT+
Sbjct: 72  VGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTR 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + ++  +D++ VDF   Y+   +EP+V P++ PNLL NG +GIAVGMAT+IP HN++E
Sbjct: 132 IDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLRE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  +A+I++P I++  L+E+I GPDFPTG  I   R  I E+Y  GRG   +R+R  V
Sbjct: 192 VIDGLIAMIEDPNITVSALMEHISGPDFPTGAYIC-GRAGIREAYETGRGSLMLRSRCEV 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           E+   G   I++TEIPYQ  K+ LIE+IA L+  K+I  + ++RDES  + +RIVL  K 
Sbjct: 251 EKQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  + ++++  ++ ++ ++  + + +  +   R P+++ L  IL+ ++ HR+ V++RR++
Sbjct: 310 KDENAEVVINQLYKMTPLQRGYGIILLSIVNNR-PEILNLRQILEHFILHRKTVVYRRTA 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
             ++  + +  IL+GL IA  N+DE++ +I++   P      +++RF+L+  Q  AIL +
Sbjct: 369 HDLRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINRFALSAIQAQAILEM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L  LE  +I  E   L+ E E +  +L         I  E   ++E +        
Sbjct: 429 RLHRLTGLEREKIIEEYQALMKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDE----- 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----------SALH 544
           RRT   E   A    L + MI +E + V +++ G+I   K + VDL              
Sbjct: 484 RRTEIIE---APDEILPEDMIAREDMVVTVTHAGYI---KRNPVDLYRAQRRGGKGIRGA 537

Query: 545 FKEGDSLKIALH-AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               D     +H A T D +L  +  G     K Y +P    L+    G+A+  L+DL  
Sbjct: 538 GGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLA---RGKAVVNLLDLAP 594

Query: 599 NQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + +       S        C +L+ + KG        E     R+GK  L    ++++ 
Sbjct: 595 EEKLAAILPVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALTFREDDEIL 654

Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688
                 GD+  ++   + + + F    I  M RG  GVR
Sbjct: 655 AAALTYGDNEILLLSRKGMAVRFHEGDIRPMGRGATGVR 693


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 366/623 (58%), Gaps = 49/623 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSAR++
Sbjct: 7   VNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVI 66

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+  +
Sbjct: 67  GEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRLEYI 126

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+ E+
Sbjct: 127 SKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEV 186

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA    ++N  ++ ++LL+ I GPDFPTGG+I+   E I  S+  GRG   +R++   E
Sbjct: 187 IEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFESGRGSIIIRSKTHFE 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   I+V E+PYQV K++LIE IA L+  KR+  + D+RDES  E +R+V+  K R
Sbjct: 246 ETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK-R 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F ++ ++T +  NM +L   R P +M L  IL  ++AHR+EV+ RR+ F
Sbjct: 304 GASFEVVLNQLFQMTQLQTSYSTNMVLLDNMR-PTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPV------------------ 416
           R+     +  +L  L +A LNIDE++ I++    NE   K +                  
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVETI 422

Query: 417 ----MVSR-FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
               +++R + L+  Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S    
Sbjct: 423 SNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEAVL 482

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            N I  E+ E+K  + ++     R++   +   A  A  ++ +IE+E + V  +  G+I+
Sbjct: 483 TNVIVRELNEIKAKYPQA-----RKSIILKNVNAVYA--EEDLIEREQVVVTATYSGYIK 535

Query: 532 SLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +   +  +         A + K  D L       T D IL  S+ GK Y L A  L  G
Sbjct: 536 RVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIG 595

Query: 584 --RGHGEAIQLLIDLNHNQDIVT 604
             +  G A+  + DL  ++ I +
Sbjct: 596 EPQSRGRALVNIFDLADDESITS 618


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/659 (37%), Positives = 376/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +    S            
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ +VK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEDVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 353/609 (57%), Gaps = 36/609 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    A K
Sbjct: 6   KENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L++NP+ +   L+E I GPDFPTGG+++  +  I ++Y  G+G   VR
Sbjct: 186 HNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D   ++
Sbjct: 245 AKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ M+T F  NM  +  G VP+V+ L  IL+E+L H+  V+ 
Sbjct: 305 IDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+++  +  + R  IL+GL IA      I  II   +  D  K  ++  + L+E Q  A
Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIETYGLSEKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I+SE   L+A  E +  +L   ++    I  E+ EV+E F  + 
Sbjct: 424 ILDMRMVRLTGLERDKIESEYTELIALIEDMADILAKPERIHKIIETELLEVQEKFGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
               RRT                  E   IT  ++++G+I+ L S            +  
Sbjct: 483 ----RRTELLVGEVLSLEDEDLIEEEDIVIT--LTSKGYIKRLPSSEFKSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGHG 587
           +   + D ++  +   T D +L  + +GK Y                +P  NLL G   G
Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLL-GIDSG 595

Query: 588 EAIQLLIDL 596
           E +Q +I++
Sbjct: 596 ETVQAVINV 604


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 347/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P  + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILTSPERLMEVIREELERVKAEFGDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 275/803 (34%), Positives = 428/803 (53%), Gaps = 83/803 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P +SI  L+ +I GPDFPT GI+  +R  I E+Y  GRG   +
Sbjct: 184 PHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGAR-GIQEAYLTGRGRIFM 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D   
Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    RS  P++++  +++ + +++ F +NM  L  G+ PQ++ L   L+ +L HR+EV
Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEAFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF------- 421
           + RR+ F ++    R  +L+GL IA  NID IIA+I+    P      +++RF       
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 422 ---------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+  Q  AIL +RL  L  LE+ +I  E + +
Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +     +  +L + ++    I  E  E++E +S       RRT   E+         + +
Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTP-----RRT---EIQDNHVDLRLEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           S+ G     K Y LP G+ ++    G+    L+ L   + I T      ++    + +V+
Sbjct: 594 SSRGKVYWKKVYELPQGSRVA---RGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVT 650

Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFS 674
           + G   +V+++ +   +R +    + +   E  +LV     D    + +     K++ FS
Sbjct: 651 ASG---VVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFS 707

Query: 675 ---IDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
              +  +   +RG KG+ L S        VI   I    T + +    Y +        L
Sbjct: 708 ERDVRPVGRTARGVKGMELPSEH-----RVIALIIAASGTILTATELGYGKRTAIAEYRL 762

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RGG G +  +  PR+G+ + +
Sbjct: 763 QGRGGRGIISIRTTPRNGEVVGA 785


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------- 409
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN                      
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 410 ----EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   +P        +   ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+ 
Sbjct: 246 ADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L +A  NID IIA+I+    P    V                
Sbjct: 364 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGML 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I +E + LL  
Sbjct: 424 EKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEF 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+ E+       T+ G  R T    +  D +   + +I +
Sbjct: 484 IAGLLFILRSPERLMEVIKEELEEI------LTEYGDARRTVINANEIDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           GK Y L    L L+ R   G  I  L+ L+  + I TA +    Y +   +++ +S G 
Sbjct: 596 GKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERI-TAILPVREYAADKYIIMATSNGT 653


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 263/716 (36%), Positives = 402/716 (56%), Gaps = 76/716 (10%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+ E+  A LA  DNP ISI
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEI 273
           E L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++  EE  + G   IV TEI
Sbjct: 181 EGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEI 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFML 332
           PYQV K+R+IE+IAEL+  K++  + ++RDES  E +RI +  K R  + ++++ ++F+ 
Sbjct: 240 PYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLK-RGENAEVVVNNLFLN 298

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR+ F ++    R  IL+G
Sbjct: 299 TQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEG 357

Query: 393 LLIAYLNIDEIIAIIRN----------------------------------------EDK 412
           L +A  NIDEII  I+                                         ED 
Sbjct: 358 LTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDP 417

Query: 413 PKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +P  +S   + L+  QV AIL LRL  L  LE+ ++ +E   +L +  ++ ++LN    
Sbjct: 418 NRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILND--- 474

Query: 471 QWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +N +   IR E+ ++  +  D   RRT   E SR D    ++ +I +E + + +S  G+
Sbjct: 475 -FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCREDLIPEEQVVLTVSQTGY 528

Query: 530 IRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
            ++  L  +          SA   K+ D ++  + A     +L  +  GK Y L    + 
Sbjct: 529 AKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVP 588

Query: 581 LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + RG  G  I  L+ L+  +  VTA +    +     + + ++ G    V E E  AN 
Sbjct: 589 QASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMATASGTVKRV-ELEQFANI 646

Query: 636 R-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688
           R  G   ++++ E+ +  V    G+   ++  N  K + F+   +  M R  KGVR
Sbjct: 647 RSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVR 702


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 363/623 (58%), Gaps = 49/623 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSAR++
Sbjct: 7   VNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVI 66

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+  +
Sbjct: 67  GEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRLEYI 126

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+ E+
Sbjct: 127 SKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEV 186

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA    ++N  ++ ++LL+ I GPDFPTGG+I+   E I  S+  G+G   +R++   E
Sbjct: 187 IEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFETGKGSIIIRSKTHFE 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E       I+V E+PYQV K++LIE IA L+  KR+  + D+RDES  E +R+V+  K R
Sbjct: 246 ET-ETRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK-R 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F ++ ++T +  NM +L   R P +M L  IL  ++AHR+EV+ RR+ F
Sbjct: 304 GASFEVVLNQLFQMTQLQTSYSTNMMLLDNMR-PTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTEN-------- 426
           R+     +  +L  L +A LNIDE++ I++    NE   K +    +++ E         
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELLVETI 422

Query: 427 ---------------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                          Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S    
Sbjct: 423 SNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEAVL 482

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            N I  E+ E+K  + ++     R++   +   A  A  ++ +IE+E + V  +  G+I+
Sbjct: 483 TNVIVQELNEIKAKYPQA-----RKSIILKNVNAVYA--EEDLIEREQVVVTATYSGYIK 535

Query: 532 SLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            ++  +  +         A + K  D L       T D IL  S+ GK Y L A  L  G
Sbjct: 536 RVQISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIG 595

Query: 584 --RGHGEAIQLLIDLNHNQDIVT 604
             +  G A+  + DL  ++ I +
Sbjct: 596 EPQSRGRALVNIFDLADDESITS 618


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/637 (38%), Positives = 364/637 (57%), Gaps = 59/637 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+E+Y+ GRG   +R++
Sbjct: 187 ITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAII-NGRKGIIEAYKTGRGRAIMRSK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             V+    G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 ADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  IL+ L IA  NID IIA+I+    P    V                
Sbjct: 364 RTVFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAML 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R+ LTE Q  AIL+LRL  L  LE  +I +E + L+  
Sbjct: 424 EKAGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ E+ E F      G  R T    +  D +   + +I +
Sbjct: 484 IAALLYILHSPERLLEVIKEELNEILENF------GDERRTVINANEVDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +   L  +           A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           GK Y L      L S +  G  I  L+ L+  + I  
Sbjct: 596 GKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITA 632


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 395/686 (57%), Gaps = 54/686 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDGFKPVHRR++  MSE+G+     +KKSARIVGEV+GK HPH
Sbjct: 27  YIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGVYHNRPYKKSARIVGEVLGKYHPH 86

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR+ ++AE +L  +++
Sbjct: 87  GDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARLRRIAEEMLADINK 146

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDFR  +++   EP V PS+ PNLL NGTSGIAVGMAT++  HN+ E+ E   A IDN
Sbjct: 147 ETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVGMATNMAPHNLSEVTEGITAYIDN 206

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+IE+L+ +I  PDFPT G I+     +  ++  GRG   +R+    E    G   IV
Sbjct: 207 PEITIEELMHFIKAPDFPT-GGIIYGYGGVKAAFETGRGRVVIRSVANFEVSKTGKEQIV 265

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTEIPY V K+ +IEK AEL+  K+I  +  IRDES      +++   +   P++++ ++
Sbjct: 266 VTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESDRQGLRIVYDLKKDAVPNVVLNNL 325

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F +N   L  G+ P+ + L  +++ ++ HR +V+ RR+ + ++  ++R  I
Sbjct: 326 YKYTQLQTSFSINNVALVHGK-PETLNLKQLIEHYVKHRLDVITRRTQYDLREAEKRAHI 384

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++DE+I++IR+   P      ++ +F+L+E Q  AIL++RL+ L  LE  +
Sbjct: 385 LEGLLIALDHLDEVISLIRSSKDPDEARNGLMEKFALSEIQARAILDMRLQRLTGLERDK 444

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   + A  E+++++L S +++ + I  ++ ++K      T  G  R +  E+   +
Sbjct: 445 ITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIK------TKYGDERRSKIEMVGGE 498

Query: 507 KATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDSLKIALHAH 558
                + MI  + + V ++++G+I+       KS S        +  K+ D  +    A 
Sbjct: 499 FNI--EDMIPDDEMLVTVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMAT 556

Query: 559 TTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             + +L  +  G+ Y L     P GN  S    G AIQ LI++  +         D    
Sbjct: 557 NHNYLLFFTEKGRLYWLRVFEVPEGNKTS---KGRAIQNLINIESD---------DKIRA 604

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GDH---VAVV 664
           +L V +  +   ++ + I+  T+ G   KT L++ S  +   ++ +    GD    VA+ 
Sbjct: 605 VLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYSRPRQNGIIAININEGDQLIDVALT 664

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQ 690
             N  ++I +        +GK VR  
Sbjct: 665 NGNDYIIIAA-------GQGKAVRFH 683


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 266/771 (34%), Positives = 409/771 (53%), Gaps = 53/771 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V + +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLNTGQVVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +  E +L+ + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV S   I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIILRGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R  +P+ ++  ++  + ++T F   +  L  G+ P+ + L  +L+E
Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQ-PRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R        K V+  +
Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LTE Q DAIL + LR L  LE   ++ E D L  +   +  LL   ++    +  ++R
Sbjct: 424 LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRRLLEDRRELLKSLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCE---VSRADKATLQ-------------QAMIEKEPITVVI 524
            +K  +  +     RRT         +ADK   Q             Q     EP  +  
Sbjct: 484 TIKRKYGDT-----RRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQEEQPPEPAILEF 538

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPAGNL--L 581
           ++RG++R L   S    A      +   I     +T   +L+L+T GK Y    G++  +
Sbjct: 539 THRGYVRRLAPGSKKAKAETIMGDNDFLIQTEITNTHQDLLILNTSGKVYPAKVGDISPI 598

Query: 582 SGRGHGEAIQLLIDLNHN-----QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633
           S R     I L+  L +      + I+  F       T  +++V+ +G    +   E+  
Sbjct: 599 SPRSP-RGIPLITLLTNTAQGNVEGILGRFTLPETKDTHDMVIVTKQGRIKRISLEELTN 657

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSI--DQIPEMSRGKGVRLQ 690
            +++G T LKV  ++++        +H  ++  +  + L F+I  DQ+P M RG  + LQ
Sbjct: 658 VSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCLRFAINDDQLPVMGRG-AMGLQ 716

Query: 691 SYKDGGISDVI-CFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           S++      +I C  I   E L  +   G +   S + L    G RG +G+
Sbjct: 717 SFRILKSQQIIGCVAIGQEENLLLVTQEGYAKKISSSSL--RAGNRGDLGT 765


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 44/708 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIGK
Sbjct: 81  MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIGK 140

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L+
Sbjct: 141 YHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 200

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA   
Sbjct: 201 DLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATCY 260

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+ ++++L+  + GPDFPTG +I+ + + I +SY  GRG   VRA+  VE    G 
Sbjct: 261 LIDHPDATVDELMRIMPGPDFPTGALIMGT-DGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V TEIPY V K  L EKIA L+  KRI  + D+RDES +    ++    + + P ++
Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F  N N+  +  +P+ + L  +L+ ++ H+ +V+ RR+ F ++    
Sbjct: 380 LNNLYKYTSLQTTFGAN-NLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+G L A  +IDE+I+IIR+   + +    ++ RF  +  Q  AIL ++LR L  L
Sbjct: 439 RAHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLTGL 498

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ EL+ L       + LL   ++    I  E+RE+   F       +RRT   ++
Sbjct: 499 ERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGD-----KRRT---QI 550

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
           + A+K    + +I  E + V I++ G++        R+ K     +S ++ KE D +   
Sbjct: 551 TGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGGKGVSGVNLKEDDVIDEM 610

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             A T + +L  ST GK Y L    L  G  +  G AI  L+     + I +      +C
Sbjct: 611 FIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVI----SC 666

Query: 613 K-------LLVVSSKGNAFIVEESEIIA---NTRKGKTFLKVSSEEKMKLVVKVT-GDHV 661
           +       L+  ++ G   +V+++ + A   + R G   + +   +++  V +V  GD +
Sbjct: 667 REFPEDEYLMFATAHG---MVKKTAMAAYDRSRRDGIIAINIKDGDRLLGVRRVKPGDKI 723

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
            +     K ++FS DQ+    R   GVR    K    ++V+  +I  G
Sbjct: 724 IMATTAGKAIMFSEDQVRATGRDTSGVRGIGMK--ADAEVLGMEITNG 769


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 360/607 (59%), Gaps = 30/607 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +MSE+G       +K
Sbjct: 7   DKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +A L +IDN      + +I++L+E + GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATIL-GKSGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            RVRA   +  +  G   I++TE+PY V K+ LI+KIAEL+  K+I  +  I D+S  + 
Sbjct: 246 IRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQSNMQG 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+ +  + R ++ ++++  ++  + ++  F +NM  L +   P+V+ L  +L  +L H+
Sbjct: 306 IRVSIELR-RDVNANVILNQLYKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLEHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+ + +     R  IL+GLLIA  NIDE+I+IIR  +     K  ++ RF L++
Sbjct: 364 EEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIERFGLSD 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  +I++E + L+   +++ ++L   K+    I     E+  I
Sbjct: 424 AQSQAIVDMRLRTLTGLEREKIEAEYNELMKRIDELKAILADNKKLLMVIR---EELSII 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
             K  D  R    + E   +      + MI  E   + ++N G+I        RS     
Sbjct: 481 MDKYGDDRRTAIGYDEFDIS-----MEDMIPNESTVITMTNLGYIKRMTPDNFRSQNRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +  +   + D ++  L   T + +L  +  G+ Y L A  +  +GR   G AI  L+ 
Sbjct: 536 RGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKAYEIPEAGRTARGTAIVNLLT 595

Query: 596 LNHNQDI 602
           L   + I
Sbjct: 596 LQAGEKI 602


>gi|332798031|ref|YP_004459530.1| DNA gyrase subunit A [Tepidanaerobacter sp. Re1]
 gi|332695766|gb|AEE90223.1| DNA gyrase, A subunit [Tepidanaerobacter sp. Re1]
          Length = 807

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/694 (35%), Positives = 395/694 (56%), Gaps = 33/694 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ Y+ Y++S I  RA+PD+RDG KP+HRRI++AMS++ L      +KSA IV
Sbjct: 11  VKIEEEMKKSYIDYSMSVIVGRALPDVRDGLKPIHRRILYAMSQLSLTPDKPHRKSATIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+G  HPHGD ++YD++VRLAQ F  RY L+ G GNFG+IDGD AAA RYTEARMT++
Sbjct: 71  GEVMGNYHPHGDAAIYDAMVRLAQDFSTRYLLVDGHGNFGSIDGDPAAAMRYTEARMTRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +++D VDF   Y+E   EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SLEMLSDLNKDTVDFIPNYDESLDEPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + +IDNP++++E+L++ I GPDFPTGGII +    I + Y  GRG   +RA+  +E
Sbjct: 191 IDGVIMMIDNPDVTVEELMQVIKGPDFPTGGII-KGYSGIKDMYTTGRGSVVMRAKATIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
            +      I+VTEIPY V K+R++EKIAEL+  K+I  + D+RDES  + +RIV+  K R
Sbjct: 250 AMDATRHRIIVTEIPYMVNKARMVEKIAELVRDKKIEGISDLRDESDRKGIRIVMDLK-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + M++ F   M  L   + P+V+ L  ++  +L H+++V+ RR+ F
Sbjct: 309 DANPHIILNQLYKHTQMQSTFGAIMLALVDNK-PRVLNLREMIYYYLEHQKDVIVRRTKF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +     R+ IL+GL IA  +IDE+IAIIR   ++   +  ++  F L+E Q   IL++R
Sbjct: 368 DLAKAQERIHILEGLKIALDHIDEVIAIIRGSKDDVTARDALIKNFGLSEKQAQVILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I  E   LL + +    +L+  K   + I  E+ ++K+ +      G  
Sbjct: 428 LKRLTALEREKIDEEYAELLKKIDYYQKILSDEKIVLSIIKEELIQIKQKY------GDE 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
           R T       D     + +I +E I +  ++ G++        RS +     ++ +  +E
Sbjct: 482 RRTHITHDEGDFDI--EDLIVEEDIVITQTHFGYVKRQPISAYRSQRRGGRGVTGITTRE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++      T   ++  +  G  Y L A  +   S    G AI  L+ L  ++ + T 
Sbjct: 540 EDFVEHIFVGTTHHVVMFFTNKGNVYKLKAYEIPDTSRTARGTAIVNLLPLKPDERVNTM 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                +D    L+  +  G       SE  ++ R G   + +  ++++  V  V  +   
Sbjct: 600 ITIKDFDEARYLIFATKNGIVKKTLLSEYASSRRTGLIAITLKDDDELIGVRLVDRNEEI 659

Query: 663 VVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691
           ++G +  + I FS++ +    R     KG+ L+S
Sbjct: 660 ILGTHNGMSIRFSVNDVSSTGRTSQGVKGINLRS 693


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/675 (36%), Positives = 375/675 (55%), Gaps = 57/675 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G      ++KSAR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRGGARKAYLEGRGSVIIRAKTRV 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  W I+V EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 251 EEIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    +++M  ++  + ++T F  NM  L+ GR P+ + L   L  ++  R +V+ RR++
Sbjct: 310 RDATAEVVMNQLYRFTPLQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREDVVARRTA 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420
           + ++    R  +L GL +A  NIDE++A IR      +  + +M  R             
Sbjct: 369 YLLRKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALI 428

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL+LRL+ L ++   ++  EL+ L  + ++   +L S 
Sbjct: 429 DDPTHTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSR 488

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    IA E+REV+E+F+       RRT   + S        + +I +E + V ++  G
Sbjct: 489 DRIMGIIADELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIAREDMVVTVTQGG 540

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS +     LS    KE D +     A+T  ++L  +TDG AY L    L
Sbjct: 541 YIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 600

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
             G     G+AI  ++ +     I      D      S  +++  +S G       S+  
Sbjct: 601 PQGARTSKGKAIVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFT 660

Query: 633 ANTRKGKTFLKVSSE 647
                GK  +K   E
Sbjct: 661 NVKSNGKIAMKFEDE 675


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/606 (39%), Positives = 355/606 (58%), Gaps = 57/606 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALID P +SIE+L+EYI GPDFPT   I   R+ I+++Y+ GRG   +R++
Sbjct: 187 LTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASI-NGRKGIIDAYKTGRGRAVMRSK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+ 
Sbjct: 246 AEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  IL+ L IA  NID IIA+I+                          
Sbjct: 364 RTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGML 423

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL LRL  L  LE  +I SE + LL  
Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+ EV E +      G  R T    +  D +   + +I +
Sbjct: 484 IAGLLLILRSPERLMEVIKEELEEVLEQY------GDVRRTIINENEIDMSL--EDLINE 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  
Sbjct: 536 EDVVVTLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595

Query: 570 GKAYTL 575
           GK Y L
Sbjct: 596 GKMYWL 601


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 346/581 (59%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F+
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  + +E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   +
Sbjct: 185 PHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSITM 243

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
           R    +E +   GR     I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  E
Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  + R   P +++ +++  + ++T F  NM  L  G+ P+++ L   L  +L  
Sbjct: 304 GMRIVVELR-RDAYPRVVLNNLYKQTPLQTNFGANMLALVNGK-PELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLT 424
           R + + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR+  D P  K  ++ RF L+
Sbjct: 362 RIDTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E   LLA+   ++ +LN  ++    +  E +E+K+
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQ 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---- 540
                     RRT         + T    +I  E   ++++ +G+I+ +  ++ +     
Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533

Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               S    KE D +K  L     D I+  +  G AY L A
Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKA 574


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL+DNP++++++L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249

Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I++   P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ SE   +L    +
Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519
           +  +L +  +    I  E+  VK  F  +     RRT       A +  L  A +I +E 
Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539

Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             V IS+ G+ +S  L ++          SA   K+ D ++  L A++   +LL S+ GK
Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599

Query: 572 AYTL 575
            Y L
Sbjct: 600 VYWL 603


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/685 (35%), Positives = 395/685 (57%), Gaps = 51/685 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E GL +    +K A+IVG+V+G  HPH
Sbjct: 25  YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRYSGPTRKCAKIVGDVLGSYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRL Q F  RYP+I  QGNFG I GD AAAYRYTEA+M ++AE +++ + +
Sbjct: 85  GDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPAAAYRYTEAKMAKIAESMVEDIKK 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI  A  A IDN
Sbjct: 145 ETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIASAISAYIDN 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+I++L ++I GPDFPTGG I   ++ I ++Y+ GRG   VR R+ +E   +G   I+
Sbjct: 205 PEITIDELCKHIKGPDFPTGGTIF-GKKGIRQAYKTGRGKILVRGRFTIEVDKKGKETII 263

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327
            TE+PYQV  + L+ +I EL   K I  + ++ DE+++   +RIV+  K R     +++ 
Sbjct: 264 FTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDETSDRTGLRIVIELK-RGAITKVVLN 322

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  + +++ F +    L  GR PQ + L  +++ ++ HR EV+ RR+ F ++  + R 
Sbjct: 323 QLFAKTALQSSFGVINLALVEGR-PQTLTLKDLVRCFVNHRIEVVTRRTRFDLRKAEERA 381

Query: 388 EILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+ L++A  NIDE+IAIIR+  D P  K  ++ RF   E Q  AI++++L+ L  LE 
Sbjct: 382 HILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKRFGFDEVQSQAIVDMQLKRLTNLEI 441

Query: 445 YQIKSELD----------NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
             ++ EL+          +LL   EKI +L+   K + N+IA +              G 
Sbjct: 442 KDLRKELEELEILIAHLKDLLEHPEKIRALV---KDETNEIADK-------------FGD 485

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFK 546
            R T       ++  ++  +I+KE + ++ISN G+I+     + KS +      ++ +  
Sbjct: 486 ERRTDIVADEVEELNIED-LIQKEEMVILISNLGYIKRIPVSAYKSQNRGGKGSNSANLA 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           E D +     A T D I+ ++ +GKAY L    +   S    G  I+ L+ ++ +++I T
Sbjct: 545 EDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGSHIKSLLSVSGDEEI-T 603

Query: 605 AFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           A V    +  +  LL+ ++ G    V          +G   +K+   +K+   +  TG D
Sbjct: 604 AVVSLKEFSDSTYLLMATAAGVVKKVTTDNFQNAKTRGIIAIKLDDGDKLVSAILTTGKD 663

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG 684
            + ++  + + L  + ++I  + R 
Sbjct: 664 EIMLITRHAQALRMTEEEIRPLGRA 688


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 264/739 (35%), Positives = 394/739 (53%), Gaps = 72/739 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NPE S+++L+E I  PDFPTGGII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPECSVDELIELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVILNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIHYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M+SR 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMSRAWDSSLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E++ +K  FS      RR       +  D   L   
Sbjct: 488 VMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDL--- 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I    + V +S+ G+I        RS K       A   KE D +     A+T + +L 
Sbjct: 545 -ITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G RG  G  I  +  L   + I        +     + + +S+
Sbjct: 604 FSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGDH-VAVVGENRKLLIFSIDQ 677
           G       S+  +N RK    + V  +E   L+      G H V +  +  K + F  + 
Sbjct: 664 GTVKKTPLSD-FSNPRKAG-IIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDEND 721

Query: 678 IPEMSR-GKGVRLQSYKDG 695
           +  M R  +GVR  + +DG
Sbjct: 722 VRPMGRNARGVRGMTLEDG 740


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/655 (37%), Positives = 364/655 (55%), Gaps = 61/655 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y +LVR
Sbjct: 3   RALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGALVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+ 
Sbjct: 63  MAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E 
Sbjct: 123 REQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEL 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPYQV K+
Sbjct: 183 IPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
            +IEK+AEL+  KRI  + D+RDES  +   V+    R    D+++  ++  + ++T F 
Sbjct: 242 SMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFG 301

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+ F +     R  +L GL IA  NI
Sbjct: 302 CNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360

Query: 401 DEIIAIIRNEDKP----KPVMVSR-------------------------FSLTENQVDAI 431
           DE+IA+IR    P    + +M  R                         ++L+E Q  AI
Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+LRL+ L  L   ++  EL+ +  E      +L S  +  N +  E+  V++ F+    
Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RRT   E+         + +I +E + V +S+ G+I        R+ +      S +
Sbjct: 479 ---RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGM 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
             KE D +     A+T   +L  S+ G     K + LP G   S    G+A+  ++ L  
Sbjct: 533 ATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQ 589

Query: 599 NQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            + I T        DS   L V+  +++G     + S+ +   R GK  +K+  E
Sbjct: 590 GERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 644


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 278/793 (35%), Positives = 431/793 (54%), Gaps = 74/793 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++++   L++ YLAYA+S I  RA+PD RDG KPVHRR++ AM+E+G D+    KKSA
Sbjct: 9   ITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD ++YD++VR+AQ F  R  LI GQGNFG++DGDSAA+ RYTE RM
Sbjct: 69  RVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEIRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  + ++ VDF   Y+E +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 129 SKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +AL+++ E+SIE+L+ +I GPDFPT G+I   ++ I+E+Y  GRG   VRAR 
Sbjct: 189 AEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIY-GKQGIIEAYHTGRGRLFVRARV 247

Query: 257 CVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E+  + +   I+VTE+PYQV K++LIEKIAEL+  KRI  +  +RDES +D   V+  
Sbjct: 248 QIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D+L+ ++F  + ++  F +NM  L  GR P ++ L  ++ E+LAHRREV+ RR
Sbjct: 308 VKRGENVDVLLNNLFSQTQLQVTFGINMVALVDGR-PVLLNLKQLISEFLAHRREVVTRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVS 419
           + F ++    R  +L+GL IA  NID +I +I+    P                   M++
Sbjct: 367 TIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLT 426

Query: 420 R-----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +                 + L+  Q  AIL+LRL  L  LE+ +I  E    L     + 
Sbjct: 427 KTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLL 486

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +LN  ++    I  E+  +KE F     L  RRT   E+   D    ++ +I  E + V
Sbjct: 487 DILNQPERLCRVIQEELIAIKEEF-----LDPRRT---EIITVDAEINEEDLIPAEDVVV 538

Query: 523 VISNRGWIRSLKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            +S+ G++   K  S+D+           S+   KE D ++  L A+T   +L  S+ GK
Sbjct: 539 TLSHEGYV---KRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGK 595

Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L  G     G  I  L+ L  N+ I        Y +   + + + KG     
Sbjct: 596 VYWLKVYKLPEGSRIAKGRPIINLLALGENERITAVLPIQNYSAEHFIFMATMKGTT--- 652

Query: 627 EESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
           +++ +I  +R    G   + +   +++  V    G   V +  +  K++ F+   +  M 
Sbjct: 653 KKTSLIDFSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCMG 712

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR-SYNRSENDLLGWLGKRGGVGSLV 740
           R   GVR    ++G    VI   I +    I +A R  Y +        L  RGG G + 
Sbjct: 713 RTACGVRGIKLQEG--QRVISLIIAKPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVIA 770

Query: 741 PKGFPRSGKFLSS 753
            K   R+G+ +++
Sbjct: 771 IKTTARNGQVVAA 783


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL+DNP++++++L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249

Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I++   P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ SE   +L    +
Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519
           +  +L +  +    I  E+  VK  F  +     RRT       A +  L  A +I +E 
Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539

Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             V IS+ G+ +S  L ++          SA   K+ D ++  L A++   +LL S+ GK
Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599

Query: 572 AYTL 575
            Y L
Sbjct: 600 VYWL 603


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 60/711 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E G+   ++ +KS+
Sbjct: 19  VQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKSS 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARM
Sbjct: 79  SIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L+ +D+D VDF+  Y++   EPVV PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 139 APIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A   LI+NP+ ++E L+EY+ GPDFPTG  IV  + ++ ++Y+ GRG  RVRA +
Sbjct: 199 GEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIV-GKNAVHKAYKTGRGRIRVRAEF 257

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            V+E G     IV+TE+PYQ  K+RLIE+IA+ +   +I  + D+RDES  D +R+V+  
Sbjct: 258 EVDEDGDN---IVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVEL 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  +PD++   + +   +E+ F + +N+  +   P+V+ L   LKE+L HRREV+ RR
Sbjct: 315 K-RGANPDVVKNQL-LEHHLESTFGV-INLALVDGQPRVLTLKETLKEYLDHRREVVRRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VSR 420
           S + +   + R  IL+G L A  NID+++  IRN    D  K  +            +  
Sbjct: 372 SEYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALRGEMTVEVDGEPLPT 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  +E+Q + I+ ++L SL  +E  +IK E + +    ++++ +LN+  +    I  E+ 
Sbjct: 432 FDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEILNNPDELDAVIKSELT 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +K+ +        RRT+F E    D  T+  + +I +E + VV++   +I+ +   +  
Sbjct: 492 AIKDEYDD-----ERRTSFIE----DTGTVTHEDLIAEEDVVVVVTEDDYIKRMPLDT-- 540

Query: 540 LSALH----------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHG 587
             A H           KEGD +     A T D +L  +  G+ Y L    +  +S    G
Sbjct: 541 FRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSRTARG 600

Query: 588 EAIQLLIDLNHNQDIV----TAFVYDSTCKLLVVSSKGNAFI----VEESEIIANTRKGK 639
           ++   L++L+  ++I     TA + D T K L ++++ N ++    VE+ + I  T  G 
Sbjct: 601 KSAVNLLELDDGEEITAVVNTADIEDETDKYLTMATQ-NGYVKRTSVEKFQNILTT--GI 657

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
              K+  ++++  V    G H  V+     + I F    +  M R  +GVR
Sbjct: 658 IATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAMGRSARGVR 708


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/467 (44%), Positives = 309/467 (66%), Gaps = 14/467 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + YR GRG  ++RA WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYRSGRGSIKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVE 235

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+
Sbjct: 296 VQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LT+ Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  
Sbjct: 356 MARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           EI+   + F        RR+   E   A KA  ++ ++  E ITVV+
Sbjct: 416 EIKADADKFGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVL 456


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/612 (37%), Positives = 354/612 (57%), Gaps = 65/612 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DN  IS+E L+EYI GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409
           + + ++    R  IL+GL +A  NID+II  I+                           
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423

Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                         ED  +P  + R  + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN     +N +   I+E  E+       G  R T    SR D +  ++ 
Sbjct: 484 ILGQITELTAILND----FNLLMAVIKE--ELVLVLQQYGDARRTEIVESRIDFS--RED 535

Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDRI 563
           +I +E + + +S  G+ ++  L  ++         SA   KE D ++  I    H T  +
Sbjct: 536 LIPEEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHAT--V 593

Query: 564 LLLSTDGKAYTL 575
           L  +  GK Y L
Sbjct: 594 LCFTNVGKVYRL 605


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 272/794 (34%), Positives = 423/794 (53%), Gaps = 94/794 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D+D VD+ D Y+  +  PVV P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 SKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A LALI++ +I+I+ L+ Y+ GPDFPTG II   R  IV++YR GRG   VRA+ 
Sbjct: 188 REVVNACLALINDSDITIDDLMRYLPGPDFPTGAII-NGRAGIVQAYRTGRGRIYVRAKA 246

Query: 257 CV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            V   E+ GR +  I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+
Sbjct: 247 EVITDEKTGRDT--IIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +    D+++ +++  + ++  F +NM  L  G+ P+V+ L  IL+ +L HRREV+ 
Sbjct: 305 IELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------M 417
           RR+ + ++    R  +L+GL IA  NID +I +++    P                   M
Sbjct: 364 RRTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSM 423

Query: 418 VSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           + R                     + L+  Q  AIL+LRL  L  LE  ++  E  + L 
Sbjct: 424 LERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLI 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E   +  +L   ++    I  E+ E+   F        RRT   E+  + +    + +I 
Sbjct: 484 EIADLMDILQDPERLLAVIREELEEITAEFGDE-----RRT---EIRDSQEDLTAEDLIT 535

Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568
            E   V +S+ G+ ++  L  + V        +AL  K+ D ++  L A+T D +L  S 
Sbjct: 536 PEDRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFI 625
            GK Y +    + ++GR   G  +  L+ L+  + + +   + + T    +  +  N ++
Sbjct: 596 FGKVYWIKVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYV 655

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE-----NRKLLIFSIDQIPE 680
                        KT L   +     L   V GD   +VG      ++ +++FS +    
Sbjct: 656 ------------KKTDLASFAPRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKAT 703

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWI-----DSAGRSYNRSENDLLGWLGKRGG 735
                 VR       G+  +    + EG   I     D+ G     SEN   G+ GKR  
Sbjct: 704 RFSESAVRPMGRASRGVRGI---NLAEGHRMISLLVPDATGTVLTVSEN---GY-GKRTA 756

Query: 736 VGSLVPKGFPRSGK 749
           V     KG  R GK
Sbjct: 757 VDDFPTKG--RGGK 768


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/669 (37%), Positives = 377/669 (56%), Gaps = 73/669 (10%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L +E +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  + 
Sbjct: 2   NDLAKE-ITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWN 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            ++KKSARIVG+VIGK HPHGD +VY+++VR+AQPF+ RY LI GQGNFG++DGD AAA 
Sbjct: 61  RSYKKSARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM+++A  +L  ++++ VD+   Y+  +  P + P++ PNLL NG+SGIAVGMAT
Sbjct: 121 RYTEVRMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMAT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+    LA IDN +I+I+ L++YI GPDFP+  II + R  + E+Y  GRG 
Sbjct: 181 NIPPHNLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYR-GLKEAYETGRGK 239

Query: 250 FRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +RAR  +E ++  G   IV+ EIPYQ+ KSRL+EKIAEL+  KRI  + ++RDES +D
Sbjct: 240 IYIRARSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKD 299

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  K+ ++  ++++ +++ L+ ++  F +NM  L  G+ P+ M L  IL  ++ H
Sbjct: 300 GMRIVIDIKHDAIS-EIVLNNLYSLTSLQISFGINMVALHNGQ-PKTMSLKDILSAFVCH 357

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------- 412
           RR ++ RR  F ++    RV +L+GL++A  NID +IA+I+  +                
Sbjct: 358 RRSIITRRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWES 417

Query: 413 ------PKPVMV----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                  K + V                S +  T+NQ  AIL LRL  L  LE  ++  E
Sbjct: 418 NNIINMRKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIE 477

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKA 508
            +N+L + E +  +L +       I  E+  +KE ++       RRT   E  VS  D  
Sbjct: 478 YENVLKKMENLICVLQNPSSLMGLIRQELVSIKEEYNDP-----RRTEISENIVSNIDLE 532

Query: 509 TLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560
            L    I +  + V +S +G+++        + K           KE D +   L A+T 
Sbjct: 533 NL----INQRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTH 588

Query: 561 DRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           D +LL S  G     K Y LP  N  S    G  I  L+ L+ N+ I        Y +  
Sbjct: 589 DTVLLFSNYGRIYWMKVYRLPKANKGS---RGRPIINLLPLDTNERITVILPVQNYTTGH 645

Query: 613 KLLVVSSKG 621
           ++ + +S G
Sbjct: 646 QVFMATSSG 654


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/692 (35%), Positives = 397/692 (57%), Gaps = 29/692 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V ++  +++ YL Y++S I  RAIPD RDG KPVHRRI++AM E+ L+    +K
Sbjct: 7   DKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD+LVR++Q F  RYPLI GQGNFG++DGDS AA RYTE
Sbjct: 67  KSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R++++AE +L+ +D+++VDF   Y++   EP V P+  PNLL NGT GIAVG AT IP 
Sbjct: 127 VRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIPP 186

Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +N+ EI +A LA +D + EIS +++L YI GPDFPTGGI  + + SI E+Y+ G G   +
Sbjct: 187 NNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIK-SIKEAYKKGIGKITL 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RA+   E++ +    +VV EIPYQV K+ L++ IA+L+  K++  + D+RDES  E VRI
Sbjct: 246 RAKVKEEKI-KNRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRI 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K +   P +++  +F  ++++T F +NM  L +G  P+++ +   +  ++ HR +V
Sbjct: 305 VIEIK-KDEQPKVILNKLFKYTNLQTTFGVNMMAL-VGNTPRLLNIKDAIGVFVEHRIDV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+SF +     R  IL+GLLI   NIDE++AII++    +     +  RF L++ Q 
Sbjct: 363 VKRRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKERFKLSDRQT 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L  L  LE+ ++  E + +L + E  +S+L         I  E+  VK+ ++ 
Sbjct: 423 QAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQTYAD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLS----- 541
                 R+T   + S  D     + +I+ E + +  S +G++++  L  +S         
Sbjct: 483 -----ERKTQILD-SIVDIGI--EDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGR 534

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
            A  F + D +      ++ + +L  +  G+ Y++ A N+   S    G  I  +++L  
Sbjct: 535 MAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQP 594

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
            + + T         L   ++ G                GK  ++++ ++ +  V  V  
Sbjct: 595 QEFVKTIVPISEADSLFFATAAGTVKRSSFRHFENIPSNGKIAIRLNEQDSLVSVFSVAE 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           GD V +       + F  D + +M R   GVR
Sbjct: 655 GDEVIITTRRGMCVRFDSDSVRDMGRAAAGVR 686


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 262/742 (35%), Positives = 405/742 (54%), Gaps = 63/742 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E+GLD+   + KS
Sbjct: 17  DIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILFAMNELGLDWNKKYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHG+ ++YD+LVRLAQ F  R PL+ GQGNFG+IDGD  AA RYTE+R
Sbjct: 77  ARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFGSIDGDPPAAERYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D D VD+RD Y+    EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A +DNPEI I++L + I GPDFPT G+I+  R  I+ +Y  GRG   +RAR
Sbjct: 197 LGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLIL-GRGGILSAYHKGRGSIIMRAR 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             VE + +    +VV+EIPYQV K  LIEKIA+L+  K+I  + D+ DES  E +RIV+ 
Sbjct: 256 VTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISDLWDESNREGIRIVIE 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++ +++  SD++T F  NM  ++ GR P+ + L   +  + + R++V+ R
Sbjct: 316 LK-RDAVADVVLNNLYKYSDLQTTFGANMLAINGGR-PESLTLKDFISAFTSFRQDVVTR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R    +     R  +L GL IA  NIDE+I +IR    P   K  +++R           
Sbjct: 374 RIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLMARDWPAKDMVPLI 433

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL LRL  L  L   +I  EL+ +  E  +  ++L
Sbjct: 434 ELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELNKIANEIREYLAIL 493

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +  + +  E++ +K+ F+       R+T   ++   +     + +I++E   V +S
Sbjct: 494 ASRARVVDIVKGELQTIKDEFATP-----RKTEIVDI---EGEVEDEDLIQREDCVVTVS 545

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++G+I        R+ +      S +  ++ D +       T   +L  S+ G  Y +  
Sbjct: 546 HKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMCYRMKV 605

Query: 578 GNL--LSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEES 629
             L   S +  G+A+  L+ L  ++ I +      DS+     +L+  +  GN      +
Sbjct: 606 WRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVRRNALA 665

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK--- 685
           +  +  R GK  +K+   + +  V     D  V +   N + + F I     + +G+   
Sbjct: 666 DFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFKGRDST 725

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GVR     DG   +VI   I +
Sbjct: 726 GVRGIRLGDG--DEVISMAILD 745


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/659 (37%), Positives = 378/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------- 409
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN                      
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 410 ----EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +   +P        +   ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 256/702 (36%), Positives = 381/702 (54%), Gaps = 81/702 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++  E G      + KS
Sbjct: 18  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKS 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIG+ HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++DGD  AA RYTE+R
Sbjct: 78  ARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESR 137

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDF+  Y++   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 138 LARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 197

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P ++IE L E + GPDFPTGG+I+  R    ++Y  GRG   +RAR
Sbjct: 198 LGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMIL-GRAGTRQAYTTGRGSIIMRAR 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VEE+ +    ++ TEIPYQV K+ LIEKIAEL+  KRI  + D+RDES  D +RIV+ 
Sbjct: 257 SHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDESDRDGMRIVVE 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + ++T F  NM  L+ GR P++M L  +L  +   R EV+ R
Sbjct: 317 IKRDAM-ADVVLNQLYRYTPLQTSFGANMVALNGGR-PELMNLKDLLLAFNDFREEVVSR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R  +L GL IA  NIDE+I +IR    P   +  +++R           
Sbjct: 375 RTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLI 434

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL+ L  L   +I  EL  L  E      +L
Sbjct: 435 ALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLADEIADYLDIL 494

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ EV+E+F+       R+T   E+  +D +   + +I +E + V +S
Sbjct: 495 RSRARIQAIVKHELAEVRELFATP-----RKT---EIIDSDFSVEDEDLIAREDMVVTVS 546

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G++        RS K      S +  ++ D +     A+T   +L  S  G+AY    
Sbjct: 547 HAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEKV 606

Query: 575 --LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
             LP            N+L  +  GE I  ++ L  ++          T  ++  ++ GN
Sbjct: 607 WRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDE------ASWETLDVMFATASGN 660

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
               + S+ +   R GK  +K+             GDH+  V
Sbjct: 661 VRRNKLSDFVQVNRNGKIAMKLDP-----------GDHIVHV 691


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 366/614 (59%), Gaps = 38/614 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++D PE + ++++E + GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  ++DE+IAIIR    + + +  ++SRF L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSRFDLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E+K    K 
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKR---KY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
            D  R      EV     +   + +IE+E + + +SN+G+I        RS K     + 
Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
                + D ++  +   T D +L  +  G+ Y                LP  NLL     
Sbjct: 533 GTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LTD 591

Query: 587 GEAIQLLIDLNHNQ 600
           GE IQ +I LN N+
Sbjct: 592 GETIQTIISLNQNE 605


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 278/804 (34%), Positives = 424/804 (52%), Gaps = 92/804 (11%)

Query: 21  SLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +L+ +LEE     YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSA
Sbjct: 40  TLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSA 99

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+ AA RYTE RM
Sbjct: 100 RVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMRYTEIRM 159

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 160 SRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATNIPPHNL 219

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL+ NPEI+IE L+E I GPDFPT  +I      + E YR GRG   +RAR 
Sbjct: 220 NEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIY-GVTGVKEGYRTGRGRVIMRART 278

Query: 257 CVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             E  E G G   IV+ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V+ 
Sbjct: 279 HFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVI 338

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+  P++++ +++  + M+  F +NM  L  G+ P+++ L  +L+ +L HRREV+ R
Sbjct: 339 ELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTR 397

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           RS F ++    R  +L+GL +A  N+DE+IA+I+    P   K  ++SR           
Sbjct: 398 RSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLVEQML 457

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L++ Q  AIL LRL+ L  LE+ +I SE  +++
Sbjct: 458 ARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEYRDVM 517

Query: 456 AEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
              E+I  LL+  +  ++   I  E     E+ +     G +R +   ++  D +   + 
Sbjct: 518 ---ERIADLLDILARPERITAIITE-----ELVAMKQQFGDKRRSEIVINTQDLS--MED 567

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  E + V +S+ G+I        R+ K       A   K+ D +     A+T D IL 
Sbjct: 568 LIASEDVVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILC 627

Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617
            S+ G     K Y++P G   S    G  I  L+ L + + I        +D    + + 
Sbjct: 628 FSSRGRVYWIKVYSVPQGGRAS---RGRPIVNLMQLEYGEKINAVLPIKTFDDNRYVFMA 684

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           +S G       SE       G   + +  ++ +  V    G H V +  +  K + F  +
Sbjct: 685 TSLGTVKKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDEN 744

Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVICFKICEG-----LTWIDSA-GRSYNRSENDLLGW 729
            +  M RG +GVR  +   G    VI   + E      LT  ++  G+    SE    G 
Sbjct: 745 DVRPMGRGARGVRGMTLGKG--QKVISLLVAESEEQAVLTATENGYGKRTPISEYTRHG- 801

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  K   R+GK + +
Sbjct: 802 ---RGSQGMIAIKTTQRNGKVVGA 822


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/610 (38%), Positives = 348/610 (57%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NPE SI++L+E I  PDFPTGG+I      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M++R 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARV 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I+ E++ +K  FS S    RR       +  D   L   
Sbjct: 488 VMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           M     + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 548 M----DMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 241/620 (38%), Positives = 377/620 (60%), Gaps = 44/620 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI +SN    +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM++
Sbjct: 3   ENIFSSN----QDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DG
Sbjct: 59  LGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGI
Sbjct: 119 DGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGGII   ++ I+E+Y
Sbjct: 179 AVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIF-GKKGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  ++RA+  +E+       IVV E+PYQV K++L   IA+L+  K I  + ++RD
Sbjct: 238 KTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRD 296

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  D +R+V+  K  ++  ++++ ++F  + ME  F + M  ++  + P+V  L  +LK
Sbjct: 297 ESDRDGIRLVIELKRDAM-SEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLK 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+   + +  +  +++
Sbjct: 355 LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMA 414

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+
Sbjct: 415 KFGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDEL 474

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+K  F        +     ++         + +I  E + V I++RG+I+ + S S +
Sbjct: 475 LEIKSKF--------KCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYE 526

Query: 540 LSALHFKEGDSLKIALHAHTTDRI-----------LLLSTDG------KAYTLPAGNLLS 582
                 K G   K+A+  +  D I           L+  TD       K Y +P G   S
Sbjct: 527 KQ----KRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEG---S 579

Query: 583 GRGHGEAIQLLIDLNHNQDI 602
               G+A+  LI L  ++ I
Sbjct: 580 RTAKGKAVVNLISLQADEKI 599


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/727 (34%), Positives = 393/727 (54%), Gaps = 59/727 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RRI++ MS+  LD  A  +K A
Sbjct: 31  IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLDATAKHRKCA 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+G  HPHGD S+Y++LVR++Q F  R P+I G GNFG+IDGD+AAA RYTE RM
Sbjct: 91  KVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECRM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +GIAVGMAT+IP HN+
Sbjct: 151 TPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHNL 210

Query: 197 QEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E + E Y  G G  ++R 
Sbjct: 211 KEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLRG 270

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L 
Sbjct: 271 VAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDLL 330

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369
            K ++ D D ++  ++  + ++T F +N+  L+    P+V     + L  IL  +L  R 
Sbjct: 331 LK-KNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFRL 389

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTE 425
           +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+     D  + +M  RF + E
Sbjct: 390 DVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIM-KRFPVKE 448

Query: 426 ------------------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                              Q DAIL L+L  L +LE   +  EL       ++I+ LL  
Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508

Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +       +W  I  E++ +   +  +T  GRRR+T   V   +    ++  I  E   
Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYG-NTPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+++  GW++  K    D S    ++GD++   +  +T   +   S+ G  YT    ++ 
Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------STCKLLVVSSKGNAFI 625
           +  G GE IQ L      + I+ A   D                     L  S+ G A  
Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685

Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS- 682
                    +TR G+ F +V     +  VV + G + V  V  + + ++   D+I  +S 
Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745

Query: 683 RGKGVRL 689
            GKGV L
Sbjct: 746 AGKGVLL 752


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/727 (34%), Positives = 393/727 (54%), Gaps = 59/727 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RR+++ MS + LD  A   K A
Sbjct: 31  IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKCA 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+GK HPHGD S+Y++LVR++Q F  R P+I G GNFG+IDGD+AAA RYTE RM
Sbjct: 91  KVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECRM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +GIAVGMAT+IP HN+
Sbjct: 151 TPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHNL 210

Query: 197 QEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E + E Y  G G  ++R 
Sbjct: 211 KEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLRG 270

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L 
Sbjct: 271 VAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDLL 330

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369
            K ++ D D ++  ++  + ++T F +N+  L+    P+V     + L  IL  +L  R 
Sbjct: 331 LK-KNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFRL 389

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTE 425
           +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+     D  + +M  RF + E
Sbjct: 390 DVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIM-KRFPVKE 448

Query: 426 ------------------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                              Q DAIL L+L  L +LE   +  EL       ++I+ LL  
Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508

Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +       +W  I  E++ +   +  +T  GRRR+T   V   +    ++  I  E   
Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYG-NTPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+++  GW++  K    D S    ++GD++   +  +T   +   S+ G  YT    ++ 
Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------STCKLLVVSSKGNAFI 625
           +  G GE IQ L      + I+ A   D                     L  S+ G A  
Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685

Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS- 682
                    +TR G+ F +V     +  VV + G + V  V  + + ++   D+I  +S 
Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745

Query: 683 RGKGVRL 689
            GKGV L
Sbjct: 746 AGKGVLL 752


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/772 (33%), Positives = 424/772 (54%), Gaps = 56/772 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  +K
Sbjct: 3   ERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RYTE
Sbjct: 63  KSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+IP 
Sbjct: 123 ARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ EA LA+  +P+I+I +L+E YI GPDFPTGG I+  + +I ++Y  G G   +
Sbjct: 183 HNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYIL-GKTAIKKAYETGNGLIVM 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE G     IVVTEIPY V K+R+IEK+++L+  K+I  + +IRDES  D   V
Sbjct: 242 RAKTEIEEKG-SKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R + P++++  ++ L+ ++T F  N   L +   P+ + L  ++  +L H+ EV+
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIAL-VNNEPKTLNLKEMITLYLDHQEEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ FR+   + R  IL+GL  A   ID II +IR+    + +   ++  F++++ Q  
Sbjct: 360 KRRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEEFNMSDKQAK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ +   
Sbjct: 420 AIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
               +RRT   E+ +       + +I  E + + ++N G+++ +   +          + 
Sbjct: 479 ----KRRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYVKRMPVDTYKTQNRGGRGIK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG----------HG 587
            +     D +   ++  T D +L  +  GK Y L   N+     S +G            
Sbjct: 532 GMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLNLDKE 591

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E ++ +I +N  Q        ++   L  V++ G    V  +E     + GK  + +  +
Sbjct: 592 EQVKSMISINRKQ-----IEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDD 646

Query: 648 EKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
           +++ + VK+TG  D + +   N KL+ F    +  M R     KG+ +    DG  S+VI
Sbjct: 647 DQL-VSVKLTGGNDQILIAASNGKLVRFEETNVRPMGRSASGVKGINV----DG--SEVI 699

Query: 702 CFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 EG   +    R Y +        L  RGG G        R+G+ ++
Sbjct: 700 GMTTDKEGKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVA 751


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 377/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/657 (35%), Positives = 384/657 (58%), Gaps = 38/657 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N + ++++  V +   ++  ++ YA+S I +RA+PD+RDG KPVHRRI++ M  +G
Sbjct: 1   MADINDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A +K A  VGEV+GK HPHGD +VYDS+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  FTPDKAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ +++  +++ +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP  N+ E+ +  + +I+ P+ +I++L + I GPDFPT GIIV  +  I ++YR 
Sbjct: 181 GMATNIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIV-GKSGIRDAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA   +E++      IVVTE+PYQV K+RL+EKIA+L+  KRI  + D+RDES
Sbjct: 240 GRGRIIMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGI 360
               +RIV+  K R  + ++++  +F  + M+  F +NM  L         P V+ L   
Sbjct: 300 DRTGMRIVIELK-REANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQA 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           +  ++ H+++V+ RR+ F +   + R  IL+GL IA  N+DE+I IIR   NE   K  +
Sbjct: 359 IDHYVDHQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RFS +E Q  AI+++RL  L  LE  ++++E   LLA+ +    +L +     + I  
Sbjct: 419 MERFSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKYYKDVLANEFMVLDIIKE 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSH 536
           E+ E+K  F        RRT        D+     + +IE++   + +++ G+++ L + 
Sbjct: 479 ELGEIKGKFGDE-----RRTKII----PDETDFDVEDLIEEQDSVITLTHFGYVKRLPTD 529

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586
           +          +  L  +E D ++      T D I+  +  GK Y L    +  +GR   
Sbjct: 530 TYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAK 589

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638
           G AI  L+ L+  + + T      Y     L++ +  G   +V++++++   + RKG
Sbjct: 590 GTAIVNLLQLDQEEKVTTVIPIKEYKEGMYLILATKNG---VVKKTDLMEYDHIRKG 643


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/732 (34%), Positives = 405/732 (55%), Gaps = 72/732 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP IS+E L+E+I GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL +A  NIDEII  I+                          
Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  ++   + L+  QV AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +L +  ++ ++LN     +N +   IRE   +  +    GRR     E+  +     ++
Sbjct: 483 EILGQIAELTAILND----FNLLMNVIREELALILQQYGDGRR----TEIVESGVDFCRE 534

Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     +L
Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVL 594

Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618
             +  GK Y L    +  + RG  G  I  L+ L+ N+  VTA +    +     + + +
Sbjct: 595 CFTDVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANE-TVTAILPLTEFPENHYVFMAT 653

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQ 677
           + G    VE ++       G   ++++ E+ +  V    G+   ++  N  K + F+   
Sbjct: 654 ASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETD 713

Query: 678 IPEMSR-GKGVR 688
           +  M R  KGVR
Sbjct: 714 VRAMGRTAKGVR 725


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/648 (36%), Positives = 376/648 (58%), Gaps = 64/648 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++KSA +V
Sbjct: 10  VGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKSAHVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE R++ +
Sbjct: 70  GNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVRLSPI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 130 ASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIPPHNLGEL 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI+ P   IE+LL +I GPDFPT G I+   + I ESY  G+G   VR +  +E
Sbjct: 190 IDALLYLIEKPTAEIEELLNFIKGPDFPT-GGIIIGTKGIRESYLTGKGKLTVRGKLVIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   I++ EIPY V KS L+ +IAEL+  K+I  ++D+RDES    +R+V+  K +
Sbjct: 249 ETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVVIELK-K 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             DP +++  ++  + ++T F + M  +  G+ P++  L  +L  +L HR++V+ RR+ +
Sbjct: 308 DADPKIVINQLYKHTQLQTTFGVIMLAILDGQ-PKIFNLKELLTIFLEHRKDVVIRRTKY 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GLLIA  ++DE+I+IIR   N +K K  ++ RF LT+NQ  AIL++R
Sbjct: 367 DLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLRFKLTQNQAQAILDMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L +LE+ ++  E+  +      ++ +L   K+ W  I+ E++E+K+ ++       R
Sbjct: 427 LHQLTRLEKERLMEEMKQIKENISILERILKDEKELWRVISEELKEIKKKYADE-----R 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +T+  E  ++D     + ++   P  + I+  G+I+ L                      
Sbjct: 482 KTSIEEEEKSDITI--EDILPDNPEVICITQDGYIKRLP--------------------- 518

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKL 614
                     LST    Y L        R  G+ +  L +  +N D++T+FV  ST   L
Sbjct: 519 ----------LST----YQLQ-------RRGGKGLNTLAN--NNDDVITSFVVTSTRSTL 555

Query: 615 LVVSSKGNAFIVEESEIIANTRKG-----KTFLKVSSEEKMKLVVKVT 657
            + S+KG  + ++  E+   +R+      K +L + +EE++  ++ ++
Sbjct: 556 FLFSNKGKVYSIKTYELDETSRQSKGIAIKEYLNIENEERITEIISLS 603


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/711 (33%), Positives = 394/711 (55%), Gaps = 30/711 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DN  N N      +  V L+  + + +L Y++S I  RA+PD+RDG KPVHRRI++ M+
Sbjct: 1   MDNEQNQNK--NSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMN 58

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++GLD    + K A  VG+V+G  HPHGD SVYD++VRLAQ F  RY L+ G GNFG++D
Sbjct: 59  QIGLDPSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVD 118

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEARM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG+SG
Sbjct: 119 GDPPAAYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSG 178

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IP HN+ E  +A   LIDNP+  + +++E + GPDFPTGGII+  R  I  +
Sbjct: 179 IAVGMATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIM-GRSGIRAA 237

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VRA+  + E   G + I+VTE+PY+V K+RLIE IA+L+  KRI  + +I 
Sbjct: 238 YATGRGKITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIE 297

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S      +     R   P +++  +F  + ++T F   M  +  G  P+++ L  +L+
Sbjct: 298 DHSDRKGMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGE-PKILSLKEMLQ 356

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS 419
            ++  + EV+ RR+ F ++    R  IL+GL IA   IDE+I IIRN       K  ++ 
Sbjct: 357 CYIEFQAEVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLME 416

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L + Q  AI+ +RL  L  +E+ +I+ E+  L A+ E+   +L S  +Q   +  EI
Sbjct: 417 RFGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEI 476

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +++  ++       RRT  C VS        + +I +E   + ++  G+++ L + +  
Sbjct: 477 MQIRNKYADP-----RRTEICAVS---GEVDIEDLIPQEECVLTLTQFGYVKRLSADTYK 528

Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +        S +  +E D        ++ D +L  +  G+ Y L    +  G    + + 
Sbjct: 529 IQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQSKGVN 588

Query: 592 L--LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI ++ ++ + +      +D    L++V+ +G    +E +    + + G   L+++ 
Sbjct: 589 IANLIPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNE 648

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
            +++  V    G+   ++   + + I F+   I  M R  +GV+  + K+G
Sbjct: 649 GDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEG 699


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 253/694 (36%), Positives = 408/694 (58%), Gaps = 38/694 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKADIEE-EKGRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  +L  ++E
Sbjct: 300 IVIELK-RDANPNVVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYLEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+        +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT   E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 478 DE-----RRT---EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  +I + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI+  ++ RKG   + ++  E  +L
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIVKYSSIRKG-GLIAINLREDDEL 645

Query: 653 V-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
           + VK+T   + + +V +N   + F+   +  M R
Sbjct: 646 IDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPMGR 679


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 377/659 (57%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRAGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    ++    + SR        
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 349/571 (61%), Gaps = 22/571 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 5   ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 65  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+
Sbjct: 125 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NP+++I +L++ + GPDFPTGG+++  +  I ++Y  GRG   VRA+ 
Sbjct: 185 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIVRAKV 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D   ++   
Sbjct: 244 DIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDV 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+ +V+ RR+
Sbjct: 304 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQEDVVRRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL IA  +IDEII IIR        K  ++  + L++ Q  AIL+
Sbjct: 363 EFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I++E   L         +L + K++ NQI  +  E+ EI  K  D  
Sbjct: 423 MRLVRLTGLEREKIEAEYQKLTEAIADYKDIL-AHKERINQIIYD--ELMEIQKKFGD-- 477

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544
           +RRT   E+   D   ++ + +IE++ I V +++ G+I+ L     KS       +  + 
Sbjct: 478 KRRT---ELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
               D ++  + + T D +L  +  GK Y++
Sbjct: 535 VHNDDFIEQLISSSTHDLLLFFTNSGKVYSM 565


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 256/729 (35%), Positives = 404/729 (55%), Gaps = 61/729 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF++ +++   EPVV P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN EI I+ L++YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVIMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E        IVV EIPY V K  LIE IA L+  K+I  +  + DES  E +RIV
Sbjct: 243 AKAEIESHPTHDK-IVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR EV+
Sbjct: 302 IDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKLLNLKDLIQLFVEHRHEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF L+E Q  
Sbjct: 360 IRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMERFQLSEVQAR 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  L + Q+ +E ++L+ +    + +L + +     I  E+ EVKE +   
Sbjct: 420 AIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILVNEELCKKVIKDELIEVKEKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
               +RR+   E+  A +    +     + + + IS+ G+I        R+     V   
Sbjct: 479 ----KRRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQNRGGVGSK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596
               ++ D ++    A   + +L  +  GK Y L     P GN  S    G AIQ L+++
Sbjct: 532 GSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653
           + + D+VTA+        L V +  +   +    ++  T+ G   KT L+  S  +   V
Sbjct: 589 DAD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639

Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             +T                + + +   N + + F    + EM R   GVR  +  + G 
Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQ 699

Query: 698 SDVICFKIC 706
            +VI   IC
Sbjct: 700 DEVIGM-IC 707


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/636 (38%), Positives = 367/636 (57%), Gaps = 67/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSAR+V
Sbjct: 11  VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI NP+++I +L++YI GPDFPT  II   ++ I ++Y+ GRG   +RAR  +E
Sbjct: 191 INGCLALIVNPDLTITELMDYIPGPDFPTAAII-NGKKGIEQAYQTGRGKVYMRARADIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K 
Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  ++++ +++  + ++T F +NM  L +   P+   L  +L+E++ HRREV+ RR+ 
Sbjct: 310 GDVG-EVILNNLYAQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F ++    R  +L+GL IA  NID II +IR    P    ++                  
Sbjct: 368 FDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLEKA 427

Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ ++E Q  AIL+LRL  L  LE  +I SE   LL    
Sbjct: 428 GEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLLDLIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S ++    I  E+ E+K  +        RRT   E++ A      + +I +E 
Sbjct: 488 ELLHILASPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISLEDLITEEN 539

Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++  +L  +          SA   K+ D ++  L A+T D IL  ST G 
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
               K Y LP   L S    G+ I  L+ L  ++ I
Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 346/606 (57%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M      F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N ++SIE+L+ +I GPDFPTG II   R+ I ++Y  GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAII-NGRKGIEDAYCTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ F ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPML 423

Query: 411 -----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                D  +P        V    + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +LNS ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILNSAERLMQVIREELEKVKAEFGDE-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 361/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 21  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 81  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DED VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 141 APLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E A   + NPE + E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 201 REVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE++     R
Sbjct: 260 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKEARIGGIADVRDETSSRTGQR 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++   ++ E Q
Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLTIDEIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + +++L S ++Q   I+ E+  + E + 
Sbjct: 437 ANAILEMQLRRLAALERQKIIQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RRT        D     + +I +E I V IS  G++        RS K     
Sbjct: 497 DD-----RRTKLIPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 549 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 608

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        Y++   L++ +  G
Sbjct: 609 PDEQIAQILAIRDYEAAPYLVLATKSG 635


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL+DNP++++++L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249

Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I++   P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ SE   +L    +
Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519
           +  +L +  +    I  E+  VK  F  +     RRT       A +  L  A +I +E 
Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539

Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             V IS+ G+ +S  L ++          SA   K+ D ++  L A++   +LL S+ GK
Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599

Query: 572 AYTL 575
            Y L
Sbjct: 600 VYWL 603


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/659 (37%), Positives = 375/659 (56%), Gaps = 64/659 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA ID  EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV
Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +    S            
Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+  QV+AIL LRL  L  +   ++  E + LL +
Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L+S ++    I  E+ EVK  F      G  R T  E++ A      + +I +
Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
           G+ Y L    L  + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 361/616 (58%), Gaps = 35/616 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    A++K A  VG V+G+
Sbjct: 15  MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYRYTEA+M ++A  +L 
Sbjct: 75  YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMAKMAVNMLT 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +D VDF+  Y++   EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E+ E    
Sbjct: 135 DIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIPPHNLHEVIEGMKI 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP+ ++++L++ I GPDFPTGGII+  R  I  +Y  GRG   +R++  +EE+ +G 
Sbjct: 195 VIQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKITLRSKTSIEEI-KGR 252

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CIVVTEIPY V K++L+E IA L+  KR+  + D+RDE++ D   ++    +  +P ++
Sbjct: 253 NCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIVIELKKDANPQVV 312

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  + ++    + +  L  G +P+++ L  IL+E++  +  V+ RR+ F ++    
Sbjct: 313 LNKLFSYTQLQDSVGVILLALVNG-IPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAKE 371

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+IA  NIDE+I I++N     + K  + +RF LT+ Q D I  + L  L  +
Sbjct: 372 REHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFGLTDVQADHIAQMTLGRLTGM 431

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I  EL  + A    ++ +L + ++ ++ I  E+  ++E F        RRT    V
Sbjct: 432 ERQKIIDELAEITATVADLEDILANEQRVFDIIIEEVEAIQEKFGDE-----RRTQIENV 486

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIA 554
           S        + +I  E   V  +N G+I+ +              ++ +  +E D +   
Sbjct: 487 S---GEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQREDDCITEM 543

Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
               + D IL ++T G     K Y LP G+  S    G  I+ L++L+ + +++ A +  
Sbjct: 544 SVCSSHDNILFITTKGIAYKMKCYELPEGSKAS---RGVNIKNLLELS-DDNLIAAMIKV 599

Query: 608 --YDSTCKLLVVSSKG 621
             +D    +++V+ +G
Sbjct: 600 EDFDDDKYIVMVTKRG 615


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LAL+DNP++++++L++YI GPDFPT GII   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249

Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+  G G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V+    
Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420
           + ++    R  IL+G  +A  NID +I +I++   P                   MV R 
Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE  ++ SE   +L    +
Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519
           +  +L +  +    I  E+  VK  F  +     RRT       A +  L  A +I +E 
Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539

Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             V IS+ G+ +S  L ++          SA   K+ D ++  L A++   +LL S+ GK
Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599

Query: 572 AYTL 575
            Y L
Sbjct: 600 VYWL 603


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 350/603 (58%), Gaps = 22/603 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75
            + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM   + L      +KS
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA+
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +AAL +I+ PE+    L+ ++I GPDFPTGG I+ +++ + E Y  G G   +R 
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL 
Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRR 369
            K R  D +  M  +F  + ++ RF +N+  L     +  + P+ + L  IL+ +L  R 
Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR    +  ++ R+ IL+G    +  +DE I IIR   N+      ++ RF L E 
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L ++E   I+ EL    A  E+I  LL+    +W  +  E++++++ +
Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEEIRRLLDDEDARWGIVKDELQDIRDEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       RR+T      AD    ++  I  E + V+++  GW++   ++S DL A+  +
Sbjct: 479 TDE-----RRSTLVG-PEADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V   
Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591

Query: 607 VYD 609
            +D
Sbjct: 592 SFD 594


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 255/730 (34%), Positives = 392/730 (53%), Gaps = 76/730 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LAL+ NPE+ IE+L+EY+  PDFPT G I      + E YR GRG   +RAR   E
Sbjct: 191 IDACLALLKNPEMDIEELIEYVPAPDFPTAGFIY-GLAGVKEGYRTGRGRVIMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++G+G    I++ E+PYQV K+ L+ KI E++  KR+  + +IRDES +     +    R
Sbjct: 250 DIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGMRAVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + D+L+  ++  + M+  F +NM  +  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GENADVLLNKLYKDTQMQDSFGINMVAIVDGQ-PRLLNLKQVMDAFLRHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSRFS 422
            ++    R  +L+GL +A  N+DEIIA+I+    P                   M+SR S
Sbjct: 369 ELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVEDMLSRVS 428

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q  AIL LRL+ L  +E+ +I  E   ++ + 
Sbjct: 429 DASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEYREVMDKI 488

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F       +RR+    V+     +++  +I  E
Sbjct: 489 ADLLDILAKPERVTAIIGDELVAVKTQFGD-----KRRSEI--VTHTHDMSMED-LIPPE 540

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G++++ K               A   K+ D +     A+T + IL  S  G
Sbjct: 541 DVVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKG 600

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620
                K Y +P G   S    G+ I  L+ L   + I     VT F  D    +   ++ 
Sbjct: 601 RVYWMKVYDVPQG---SSGARGKPIVNLLPLEEGEKINAILPVTEFAEDKY--VFFATAN 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       ++     ++G   + +  ++ +  V    G H V +   + K + F    + 
Sbjct: 656 GTVKKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVR 715

Query: 680 EMSRG-KGVR 688
           E  R  +GVR
Sbjct: 716 ETGRASRGVR 725


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 339/542 (62%), Gaps = 22/542 (4%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  R  L+ G GNFG++DGD AAA RYTEARM++++  +L+ +++D +D+ D Y+  + 
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EPV+ P++FPNLL NG+SGIAVGMAT+IP+H++ E+ +  LAL  +P+I+I  L+EYI G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPT G+I+  R  I  +Y  GRG   VR R  +EE   G   IV+TEIPYQV K+RL+
Sbjct: 181 PDFPTAGMIM-GRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLV 239

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E+IAEL   K+I  +  + DES      ++    R +   +++ ++F ++ ++T F +NM
Sbjct: 240 ERIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM 299

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L +   P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+GL IA  NID I
Sbjct: 300 LAL-VDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAI 358

Query: 404 IAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+ E  NL+A    
Sbjct: 359 IKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 418

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEP 519
           + ++L   ++    I  E+ E+K  ++      +RRT   E+   D  +L+ + +I +E 
Sbjct: 419 LKAILADDERILEIIREELEEIKVKYAD-----KRRT---EILAGDLVSLEDEDLIPEEE 470

Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + + ++ RG+I        RS +     +  +   E D ++  +   T D +L  +  GK
Sbjct: 471 VAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGK 530

Query: 572 AY 573
            Y
Sbjct: 531 VY 532


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/763 (34%), Positives = 419/763 (54%), Gaps = 63/763 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDSAAA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +A IDN EI ++ L++YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E        IVVTEIPY V K+ LI+ IA+L   K+I  + ++ DE+  E +RIV
Sbjct: 243 AKAEIESHPTHDK-IVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR EV+
Sbjct: 302 IDIK-RDANASVVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      +++RF+L+E Q  
Sbjct: 360 IRRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMARFNLSEIQAR 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  L + Q+ +E ++L+ +    + +L++ +     I  E+ EVKE +  +
Sbjct: 420 AIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILSNEELCKKVIKDELLEVKEKYGDN 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RR+   E+  A +    +     + + + IS+ G+I        R+     V   
Sbjct: 480 -----RRS---EIVYASEEFNPEDFYADDEMVITISHMGYIKRTPLSEFRAQNRGGVGSK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596
               +  D ++    A   + +L  +  GK Y L     P GN  S    G AIQ L+++
Sbjct: 532 GSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653
             + D+VTA+        L V +  +   +    ++  T+ G   KT L+  S  +   V
Sbjct: 589 EAD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639

Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             +T                + + +   N + + F    + EM R   GVR  +  + G 
Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQ 699

Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            +V   IC K  E  T +  +   Y +  +        RGG G
Sbjct: 700 DEVIGMICIKDPETETIMVVSENGYGKRSDIEDYRKTNRGGKG 742


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/651 (35%), Positives = 368/651 (56%), Gaps = 69/651 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I GPDFPTGGII   R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIY-GRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGS 418

Query: 409 ---------------------NEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443
                                 ED   P  +      + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   + S
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-S 532

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
           R D    ++ +I ++ + + +S  G+ ++         K      SA   KE D +   +
Sbjct: 533 RMDFN--REDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLI 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604
              T   +L  +  G+ ++L    + ++ RG  G  +  LI LN ++ + T
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTT 641


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 259/723 (35%), Positives = 396/723 (54%), Gaps = 60/723 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQP+  RYPL+ GQGNFG++DGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP  SIE+++E + GPDFPTGGII    E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIIC-GHEGICSTYHTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           AR  VEE   +    IV+TEIPY V KSRLIE+IA+L+  K +  + D+RDES  E VR+
Sbjct: 244 ARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++T F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 304 VLELK-KGESSEVMINRLYKFTDVQTTFGANMLALDKN-LPRTMNIHRMISAWIRHRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+G L A   +D ++  I++ D     K  ++  +  T+ Q 
Sbjct: 362 LRRRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIELYGFTDAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  + + E D LL +      +L   +   + I  E++++ + + K
Sbjct: 422 VAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRVLADEELVKDIIRTELQDLVK-YHK 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSV 538
           +      R T  E   AD     + +I  E + + IS   +++ +            H V
Sbjct: 481 TP-----RKTTIEFD-ADDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQRRGGHGV 534

Query: 539 DLSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLS 582
             S    K+G D LK    A T D +L+ +  G+ Y      LP G          N L 
Sbjct: 535 --SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKSLINFLE 592

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641
           G   GE +  ++++   ++    F++ +T + +V     +AF        +N R KG   
Sbjct: 593 GIRPGEQVAAILNVKSFEN--ADFLFLATKQGVVKKVPLDAF--------SNPRKKGIRA 642

Query: 642 LKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDG 695
           L++   +++     +  +H  V +  +    + F  D++  M R     +GV L++ +D 
Sbjct: 643 LEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDC 702

Query: 696 GIS 698
            +S
Sbjct: 703 VVS 705


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/570 (39%), Positives = 344/570 (60%), Gaps = 20/570 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSA
Sbjct: 20  ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L++G GNFG++DGD AAA RYTEAR+
Sbjct: 80  RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGDGAAAMRYTEARL 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L+DNP+ +   L+E + GPDFPTGG+++  +  I ++Y  GRG   +RA+ 
Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYETGRGSIILRAKV 258

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DES  +   V+   
Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+
Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYYLEHQVEVITRRT 377

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F L++ Q  AIL+
Sbjct: 378 KYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGFGLSDKQAQAILD 437

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I  E + L+ + E   ++L+S + + NQI  E  E+ EI  K  D  
Sbjct: 438 MRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSS-RDRVNQIIYE--ELLEIQKKFGDER 494

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
           R      EV     +   + +IE+E + V +++ G+I+ L +            +  +  
Sbjct: 495 RTELLVGEV----LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGVQGMGV 550

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + D ++  +   T D +L  +  GK Y +
Sbjct: 551 HDDDFVEQLVSTSTHDVLLFFTDAGKVYRM 580


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RAR  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRARAEIES-GQAHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HRRE
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALIHGR-PKTLNLRDLIKYFIEHRRE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/605 (38%), Positives = 349/605 (57%), Gaps = 55/605 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++  
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L +A  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL LRL  L  LE  +I +E + LL   
Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ ++ E +      G  R T    +  D +   + +I +E
Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILEEY------GDARRTVINANEVDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KMYWL 601


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 383/699 (54%), Gaps = 75/699 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 18  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPDRKYVKS 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+IDGD  AA RYTE+R
Sbjct: 78  ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDGDPPAAMRYTESR 137

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 138 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 197

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALID+P ++IE L E I GPDFPTGG+I+  R     +Y  GRG   +RA+
Sbjct: 198 LGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLIL-GRAGTRAAYMTGRGSVVMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VEE+ +    +V TEIPYQV K+ L+EKIA+L+  KRI  + D+RDES  D +RIV+ 
Sbjct: 257 SHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDESDRDGMRIVVE 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + ++T F  NM  L+ GR P+++ L  +++ ++  R EV+ R
Sbjct: 317 LKRDAM-ADVVLNQLYRYTPLQTSFGCNMVALNGGR-PELLNLKDLIQAFIDFREEVVSR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  +L GL IA  NIDE+I +IR    P   +  ++SR           
Sbjct: 375 RTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDWPAADIAPLI 434

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL+ L  L   ++  EL  L  E      +L
Sbjct: 435 ALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDIL 494

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ EV+  ++       R+T   E+   D     + +I++E + V +S
Sbjct: 495 RSRARILGIVKAELAEVRAEYATP-----RKT---EIQDWDSNVEDEDLIQREDMVVTVS 546

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G+I        R+ +      S +  ++ D +     A+T   +L  S+ G+AY    
Sbjct: 547 HAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 606

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625
             LP   L +    G+A+  ++ L+   + +T  +          T  ++  ++ GN   
Sbjct: 607 WRLP---LAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRR 663

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            + S+ +   R GK  +K+             GDH+  V
Sbjct: 664 NKLSDFVQVNRNGKIAMKLDE-----------GDHIVHV 691


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/432 (46%), Positives = 295/432 (68%), Gaps = 7/432 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +P+L++  ++  +D++T F + M  L +  VP+V+ L  +L E++ HR +V+ R
Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +I
Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419

Query: 432 LNLRLRSLRKLE 443
           L+++L+ L  LE
Sbjct: 420 LDMKLQRLTGLE 431


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 347/602 (57%), Gaps = 41/602 (6%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N+   N     NV  V ++  +++ +L Y++S I  RA+PD+RDG KPVHRRI+++  
Sbjct: 12  IKNMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQY 71

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E GL    A+KK A  VG V+G+ HPHGD SVYD+LVRLAQ F   YPL+ G GNFG++D
Sbjct: 72  EDGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVD 131

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEARM++++  +L  +D+D V+F   Y++   EP V PS+FPNLL NG++G
Sbjct: 132 GDPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTG 191

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E  +A   LIDNP+  +E L+EYI GPDFPTG +I+  R  I  +
Sbjct: 192 IAVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIM-GRAGIRAA 250

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VRA   + E   G + I+VTE+PYQV K+RLIE IA+++  KRI  + +I 
Sbjct: 251 YATGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNID 310

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S  +   +     R   P +++  ++  + M+T F + M  +  G  P+ + L  +L+
Sbjct: 311 DHSDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGE-PKTLTLKEMLQ 369

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVS 419
           E++  + EV+ RR+ + ++    R  IL+GL IA  NIDEII+IIRN +D+P  K  M  
Sbjct: 370 EYIKFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTE 429

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGK 469
           RF L + Q +AI+ +RL  L  LE  +I+ EL          +++LA +E++ +++    
Sbjct: 430 RFGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDILAHEERVKAIVKD-- 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                      E+  I +K  D   R+T    VS        + +I +E   + ++N G+
Sbjct: 488 -----------ELMGIRNKYAD--ERKTEIMAVS---GEVDIEDLIPQEECVLTLTNFGY 531

Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++  K  +          +S +  +E D        ++ D ++  ++ G+ Y L    + 
Sbjct: 532 VKRQKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIP 591

Query: 582 SG 583
            G
Sbjct: 592 EG 593


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/651 (35%), Positives = 370/651 (56%), Gaps = 69/651 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I+GPDFPTGGII   R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIY-GRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGS 418

Query: 409 ---------------------NEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443
                                 ED   P  +    + + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   + S
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-S 532

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
           R D    ++ +I ++ + + +S  G+ ++         K      SA   KE D +   +
Sbjct: 533 RMDFN--REDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLV 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604
              T   +L  +  G+ ++L    + ++ RG  G  +  LI L+ ++ + T
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTT 641


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/633 (37%), Positives = 374/633 (59%), Gaps = 42/633 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGII    E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +   +E+ +G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA   +RIV 
Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++ ++F  ++++T F +N   L  GR PQ++ L  ++  ++ HR +V++
Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PQLLNLKDLIFHFVEHRYDVVY 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R+ IL+G +      D +   I IIR  DKPK  +++ F LT+ Q +A
Sbjct: 361 RRTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +    
Sbjct: 421 ILALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY---- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542
             G  R +  E +  + +   + MI  + + + IS+ G+I+       K+ S   V   A
Sbjct: 477 --GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKA 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              ++ D L+    +     +L  +  GK      Y +P G   S    G AIQ LI++ 
Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINI- 588

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621
            + D + AFV         Y S   L++ + KG
Sbjct: 589 ESDDKIKAFVSVQNLKDEDYISNNYLIMATKKG 621


>gi|332654826|ref|ZP_08420568.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
 gi|332516169|gb|EGJ45777.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 262/753 (34%), Positives = 404/753 (53%), Gaps = 56/753 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E GL     FKKSA
Sbjct: 19  IKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGLTSDKPFKKSA 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VG+V+G+ HPHGDQSVYD+LVRL Q F  RY L+ G GNFG+IDGD  AAYRYTEARM
Sbjct: 79  TCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNFGSIDGDPPAAYRYTEARM 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ ++++ VD+   ++E   EP V PS+FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 139 SKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A + ++DN   +++ L+E+I GPDFPT G+I+  R  I  +Y  G+G  RVRAR 
Sbjct: 199 TEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIM-GRSGIRAAYATGKGHIRVRART 257

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE G+    I+VTEIPYQV K  LI+ +A+ +  KR+  + DIRDES  +   ++   
Sbjct: 258 EFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESDRNGMRIVIEL 317

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRR 375
            R  +P +++  +   + ++  F +NM  L    + P+++ L  IL E++A + +++ RR
Sbjct: 318 KRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLREILDEYIAFQEQIITRR 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + +  +    R  +L+GLLIA  NIDE+I IIR   D  K  +++RF L + Q  AIL++
Sbjct: 378 TIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYDNAKERLMTRFGLDDVQAQAILDM 437

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL++L+ L+  ++++E   L       D LL S +    Q+  +  E+ EI  K  D  +
Sbjct: 438 RLKALQGLDREKLEAEYKELEERIAYYDKLL-SDEGLLRQVLKD--ELTEIRDKYGDQRK 494

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG---- 548
               F E    D   ++  +IE+E     ++  G+I+   +  ++        ++G    
Sbjct: 495 TEIAFVE----DDLDIED-LIEEEQCVFTLTQAGYIKRTPVSEYAAQSKGGQGRKGITTR 549

Query: 549 --DSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HGEAIQL 592
             D +     A T D +   +  G     K Y +P +G    G           GE +Q 
Sbjct: 550 DEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTAKGTNIVNILQVEQGEKVQT 609

Query: 593 LIDLNH--NQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEE 648
           +I      N D+    V  + T K L V++  N   +  S I A    +G   + V   +
Sbjct: 610 MIHTRELDNPDLYLVMVTRNGTVKRLPVTALKN---IRNSGIRALRLEEGDQLISVRETD 666

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFK 704
             K ++  T D +AV         F  + +  M R     +G+RL+     G   V   +
Sbjct: 667 GTKKILIATHDGMAVC--------FDENDVRPMGRDAVGVRGIRLRE----GDYVVSAAR 714

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              G T +    + Y +        +  RGG+G
Sbjct: 715 ATAGRTVLTITEKGYGKRTPVEDYRITNRGGIG 747


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|332381517|gb|AEE66364.1| DNA gyrase subunit A [Bordetella pertussis CS]
          Length = 893

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/610 (38%), Positives = 347/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NPE SI++L+E I  PDFPTGG+I      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M++R 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARV 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L    +    I+ E++ +K  FS S    RR       +  D   L   
Sbjct: 488 VMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           M     + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 548 M----DMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/603 (38%), Positives = 356/603 (59%), Gaps = 49/603 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR 
Sbjct: 25  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKSYRKSARP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 85  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D V+++D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRTGARKAYLEGRGSVIIRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  W IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    +++M  ++  + ++T F  NM  L+ GR P+ + L   L  ++  R EV+ RR++
Sbjct: 323 RDATAEVVMNQLYRFTPLQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREEVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           + ++    R  +L GL +A  NIDE++A IR   +  + +  +++R              
Sbjct: 382 YLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLMTRRWPAQDILPYIALI 441

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL+LRL+ L ++   ++  EL+ L  + ++   +L S 
Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLDILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +  + I+ E+REV+E+F+       RRT   + S        + +I +E + V ++  G
Sbjct: 502 DRIMSIISDELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIAREDMVVTVTQGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS +     LS    KE D +     A+T  ++L  +TDG AY L    L
Sbjct: 554 YIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 613

Query: 581 LSG 583
             G
Sbjct: 614 PQG 616


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/633 (37%), Positives = 374/633 (59%), Gaps = 42/633 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGII    E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +   +E+ +G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA   +RIV 
Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++ ++F  ++++T F +N   L  GR PQ++ L  ++  ++ HR +V++
Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PQLLNLKDLIFHFVEHRYDVVY 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R+ IL+G +      D +   I IIR  DKPK  +++ F LT+ Q +A
Sbjct: 361 RRTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +    
Sbjct: 421 ILALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY---- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542
             G  R +  E +  + +   + MI  + + + IS+ G+I+       K+ S   V   A
Sbjct: 477 --GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKA 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              ++ D L+    +     +L  +  GK      Y +P G   S    G AIQ LI++ 
Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINIE 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621
            + D + AFV         Y S   L++ + KG
Sbjct: 590 SD-DKIKAFVSVQNLKDEDYISNNYLIMATKKG 621


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/691 (36%), Positives = 400/691 (57%), Gaps = 36/691 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +S T +   V  + L   ++  YL YA+S I  RA+PD RDG KPV RR+++AM E+GL 
Sbjct: 5   SSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLELGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              AFKKSAR+VGE +GK HPHGD ++Y+++ RL+Q F  RYPL+ GQGNFG+IDGD  A
Sbjct: 65  HNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGDPPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  + E +L  +DE+ V++   ++E   EP+V PS+ PNLL NG++GIAVGM
Sbjct: 125 AMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+ +A  AL+++P+I + +L+  + GPDFPTGG+I+  R+ IV++Y+ GR
Sbjct: 185 ATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVIL-GRDGIVDAYKTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           G   VR    +E+  RG   IV+TEIPY V K+ LIE IA+   +  +  + D+RDES  
Sbjct: 244 GKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDESNR 303

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E +R+VL   +R  DP+L++  ++  + +++ F +    L  GR P+V+ L  IL+ +L 
Sbjct: 304 EGIRVVL-ELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDGR-PRVLTLHQILQVFLD 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HRR V+ RR+  R++  + R  I++GL+ A   ID++IA+IR+   P   K  +V     
Sbjct: 362 HRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVETLGF 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL+ L  LE  +++ EL  LL + E+  S+L +       +  E++E++
Sbjct: 422 SEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPSILDGVVRGELQEIR 481

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             +        RRT    +  A +    + +I +  I VV+S  G++R +        + 
Sbjct: 482 AAYEDD-----RRT---RIEDAVEDVSAEDLIPESEIVVVLSRDGFLRRMPLQDYRCQSR 533

Query: 544 HFK--EGDSLK----IAL-HAHTTDRIL-LLSTDGKAYTLPAGNLLSGR-GHGEAIQLLI 594
             K  +G S +    IAL    TT R L L ++ G+ + +    L   + G G+ +   +
Sbjct: 534 GGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLPEPKTGKGKHVSTFV 593

Query: 595 DLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            L   + +VT      D    +  V+ +G A  +  +E+    R G+  L ++ E+ +  
Sbjct: 594 SLEEGERVVTLRDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRRILGLAPEDTIAR 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQ---IPE 680
            V+ TG      GE+  LL  +  Q   +PE
Sbjct: 654 -VRFTG------GEDELLLTTAQGQTLRVPE 677


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/570 (39%), Positives = 343/570 (60%), Gaps = 20/570 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSA
Sbjct: 20  ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 80  RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L+DNP+ +   L+E + GPDFPTGG+++  +  I ++Y  GRG   +RA+ 
Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYETGRGSIILRAKV 258

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DES  +   V+   
Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+
Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYYLEHQVEVITRRT 377

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F L++ Q  AIL+
Sbjct: 378 KYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGFGLSDKQAQAILD 437

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I  E + L+ + E   ++L+S + + NQI  E  E+ EI  K  D  
Sbjct: 438 MRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSS-RDRVNQIIYE--ELLEIQKKFGDER 494

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
           R      EV     +   + +IE+E + V +++ G+I+ L +            +  +  
Sbjct: 495 RTELLVGEV----LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGVQGMGV 550

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + D ++  +   T D +L  +  GK Y +
Sbjct: 551 HDDDFVEQLVSTSTHDVLLFFTDAGKVYRM 580


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 254/710 (35%), Positives = 400/710 (56%), Gaps = 41/710 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE++L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +G  P+VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VGNQPKVMNLLEMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR   N    K  ++ RF L+E 
Sbjct: 365 DVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKRFGLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  EI  + E  
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAILADKKLLLGVIKKEILVISE-- 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---V 538
            K  D  R R  + E   +      + +I +E + + ++  G+I+     + KS +    
Sbjct: 483 -KYGDDRRTRIGYDEFDIS-----MEDLIPRENVVITMTKLGYIKRMTMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y + A  +  +GR   G AI  L+ L
Sbjct: 537 GIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
              + I TA +    Y+    L + + KG   +V+++ I   AN RK         E+  
Sbjct: 597 MPEEKI-TAIIPLREYEEGKYLFMATEKG---LVKKTPIQDYANVRKTGLAAIALREDDR 652

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGI 697
            + VKVT +   ++   R  +    ++    S G+   GVR  +  D  +
Sbjct: 653 LIEVKVTDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGVRGMNLTDNDV 702


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 264/766 (34%), Positives = 428/766 (55%), Gaps = 54/766 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K ARIV
Sbjct: 12  IDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEAR++++
Sbjct: 72  GDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP HN++E+
Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNIKEV 191

Query: 200 CEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            +A + LIDN     + +I++++  I GPDFPTG  I+  R  I E+Y  GRG  +VRA 
Sbjct: 192 IDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLR-GIKEAYTTGRGKIKVRAV 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVV+E+PY V K++LIEKIAEL+  KRI  + D+RDES  +   V+  
Sbjct: 251 TEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMRVVIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + ++ ++++  ++  + ++  F +NM  L +   P+V+ +  +L+ +LAH+ +V+ RR
Sbjct: 311 LRKDVNANIILNRLYKHTQLQDTFGVNMLAL-VDNQPKVLNILQMLQYYLAHQEDVVTRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +     R  IL+GLLIA  NIDEII IIR   N +  K  ++ RF L++ Q  AI+
Sbjct: 370 TKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQAQAIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR+L  LE  +++SE + LLA+ E  + +L   K+    I  EI  V++ +      
Sbjct: 430 DMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVVEDKYKDD--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
             RRT F +    +   L    I+KE I + ++  G+I+ +   + +        +  + 
Sbjct: 487 --RRTGFMQDDDMEDEDL----IQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKGIKGMQ 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
             + D ++  + + T + I   +  G+ YT+    +   S    G AI  L+ L  ++ I
Sbjct: 541 TIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKI 600

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--------NTRK-GKTFLKVSSEEKMKLV 653
             + +  S  K    S+ G  F+V ++  I         N RK G   + ++ ++++ + 
Sbjct: 601 --SAIIPSEAK----SNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDEL-IE 653

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ-IPEMSRG-KGVRLQSYKDGGISDVICFKIC---E 707
           VKVT GD   ++     + I   D+ I  + RG  GVR      G   +VI  ++    E
Sbjct: 654 VKVTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNTG--DEVIGMQLASQGE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  +   G  Y +        +  RGG G +  K   ++GK + +
Sbjct: 712 YLLLVSEYG--YGKRTKISEFKVQNRGGKGIICYKDNEKTGKLVGA 755


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 342/594 (57%), Gaps = 54/594 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G      ++KSAR V
Sbjct: 16  VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 76  GDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLARA 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP HN  EI
Sbjct: 136 ASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIAVGMATNIPPHNPGEI 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I+ P+++++ +L+Y+ GPDFPTGG I+  R  I  ++  GRG   +RAR  VE
Sbjct: 196 IDATLAMIERPDMTLDDILQYVPGPDFPTGGTIL-GRAGIRSAFETGRGSVIIRARAEVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++ R    I+VTEIPYQV K+ L E+IAEL+  K++  + DIRDES      ++    R 
Sbjct: 255 DIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDESDRSGMRIVIEIKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++  R EV+ RR+ F 
Sbjct: 315 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGQ-PRLMGLKDVLQAFIRFREEVILRRARFD 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411
           +     R  +L GL+IA  NID +IA+IR                              D
Sbjct: 374 LNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERAWDAGDIAPLLALIHD 433

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +   V+  R  LTE Q   IL LRL+ L  LE  +I+ EL  +     ++  ++ S  ++
Sbjct: 434 EGNVVVDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVATRINELLEIIASRPRR 493

Query: 472 WNQIACEIREVK-EIFS-KSTDLGRRRTTFCEVSRADKATLQ--QAMIEKEPITVVISNR 527
              +  E+  V+ EI + ++TD+            AD A  Q  +++IE   + V I+  
Sbjct: 494 MEVMRNELATVRAEIATPRATDI------------ADYAGDQTDESLIEPGQMVVTITRD 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           G+I        R+        +A   +  D +  + +AHT   +L  S+ GKAY
Sbjct: 542 GFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAY 595


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 356/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
            S     RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/621 (37%), Positives = 365/621 (58%), Gaps = 56/621 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G      
Sbjct: 4   LNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKP 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ LI G GNFG++DGD AAA RY
Sbjct: 64  HKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T+I
Sbjct: 124 TEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG   
Sbjct: 184 PTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGTVT 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  +   
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R     +++ +++  + ++T F  NM  +  G  P+ M L  IL  +LAH+REV
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHG-APKTMSLKEILVAYLAHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ F +Q    R  IL+GL IA  +IDEII IIR+    ++ K  +++ ++L++ Q 
Sbjct: 362 IRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDKQA 421

Query: 429 DAILNLRLRSLRKL------EEYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            AIL++RL  L  L      EEYQ    + ++L ++LA +E++D ++      +N     
Sbjct: 422 QAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEII------YN----- 470

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                E+    T  G +R T  +V     +   + +IE+E + V ++N G+I+ + +   
Sbjct: 471 -----ELLEIQTKFGDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEF 524

Query: 539 D--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--------------- 575
                    +  ++  + D +   +   T D +L  +  GK Y +               
Sbjct: 525 KAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGI 584

Query: 576 PAGNLLSGRGHGEAIQLLIDL 596
           P  NLL+  G+ E IQ +I++
Sbjct: 585 PVVNLLNFEGN-EKIQTVINV 604


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/636 (37%), Positives = 360/636 (56%), Gaps = 57/636 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +R++
Sbjct: 187 MTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRSK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V+    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 246 AEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +++ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMIECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L IA  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LT+ Q  AIL+LRL  L  LE  +I +E + L+   
Sbjct: 425 KAGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDII 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ E+ E F      G  R T    +  D +   + +I +E
Sbjct: 485 AALLYILRSPERLLEVIKEELNEILENF------GDERRTVINANEVDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +        + +      SA   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604
           K Y L      L S +  G  I  L+ L+  + I  
Sbjct: 597 KLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITA 632


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/631 (38%), Positives = 357/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++DGD+ AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+L+L  +D+D VD++D Y+   +EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P +SI+ L   I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 197 LGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E V +    I+++EIPYQV K+ ++E+IA+L+  K+I  + D+RDES  D   V+  
Sbjct: 256 VEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDLRDESDRDGFRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR PQ+M L  +L  ++A R +V+ RR
Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + + +     R  IL GL IA  NIDEII +IRN   P                   M++
Sbjct: 375 TKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434

Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                R  L E+        Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDKLALEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  VK  F+       R+T   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQTIVKDELIAVKTEFATP-----RKTVIIE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   +    G G+A+  ++ L   + I T
Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 269/761 (35%), Positives = 420/761 (55%), Gaps = 55/761 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V   +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 15  VIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 74

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL+ G GNFG++D D  AA RYTE R+
Sbjct: 75  RVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETRL 134

Query: 137 TQVAELILQG-VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + VA   L G + E+ V+F   ++    EPVV PS+ P LL NG +GIAVGMAT+IP HN
Sbjct: 135 SPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID P++S+++LLE + GPDFPT G I+   E I E+Y  GRG   +RA 
Sbjct: 195 LAEVVDALIALIDRPDLSVDQLLELVPGPDFPT-GGIIIGTEGIREAYTTGRGSITLRAV 253

Query: 256 WCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
             +EE+  GRG      I++TE+PYQV KS LIEKIAELI   RI  + D+RDES  E +
Sbjct: 254 AQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGM 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R   P  L++ ++  + ++T F + M  L  G+ P+ M L  +L+ +L  R 
Sbjct: 314 RIVIELK-RETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQ-PRQMGLKELLEHFLNFRE 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
             L RR   ++     R+ +++GLL A  N+D +I ++R   +    K  + S  +L++ 
Sbjct: 372 HTLTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTLQSELNLSDR 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL++ LR L  LE+  +++E D L+ + +++++LL S  +    +  ++R +K  +
Sbjct: 432 QADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLETLLGSRHELLKALKKDLRSLKRQY 491

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------------- 533
           +       +R T  +       ++++   + E +T+ +S RG++R L             
Sbjct: 492 AD------QRLTRIQTEAEPLPSVEELAADTE-VTLELSQRGYVRCLRGGERGRRNQARS 544

Query: 534 ---KSHSVDLSALHFKEGDSLKIAL-----HAHTTDRILLLSTDGKAY--TLPAGNLLSG 583
              K+++        ++   LK  L      A  +D +L+ +  GK Y   L A  L   
Sbjct: 545 EGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFTQSGKGYRVDLTAMPLGDR 604

Query: 584 RGHG-EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           R  G   + LL +    + IV  F+     S  +L+++S++G A  +   +    T +G 
Sbjct: 605 RDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQLVLLSAEGRAKRISLEDFAEVTARGL 664

Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD 694
           +  K+   + +  +  V +   VA+     +LL F+ D+IP M R     + +RL  +K 
Sbjct: 665 SVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIPLMGRTTLGQQAIRL--HKQ 722

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL-LGWLGKRG 734
             +   I  +  + L  +   G       N + LG LG  G
Sbjct: 723 ERLVGAIVLQTYDNLLLVSERGYGKRMPLNAVRLGRLGDLG 763


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 379/654 (57%), Gaps = 39/654 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L  G+ P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  ++ 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534
             +++ +        RRT        D  +++  +I +E   + ++  G+I+     + K
Sbjct: 479 ALIRDKYGDE-----RRTQIG--FDVDDISMED-LIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589
           S +     +  +   + D ++      T   I+  +  G+ Y L A  +  SGR   G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637
           I  L+ L   + I TA +    Y+    LL+ +  G   +V++S I+  AN RK
Sbjct: 591 IVNLLQLQPGEKI-TAVIPLVDYEEGKYLLMATKYG---VVKKSSIMEYANIRK 640


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 349/571 (61%), Gaps = 22/571 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 9   ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+
Sbjct: 129 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NP+++I +L++ + GPDFPTGG+++  +  I ++Y  GRG   VRA+ 
Sbjct: 189 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D   ++   
Sbjct: 248 DIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+ +V+ RR+
Sbjct: 308 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQEDVVRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL IA  +IDEII IIR        K  ++  + L++ Q  AIL+
Sbjct: 367 EFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I++E   L         +L + +++ NQI  +  E+ EI  K  D  
Sbjct: 427 MRLVRLTGLEREKIEAEYKKLTEAIADYKDIL-AHRERINQIIYD--ELMEIQKKFGD-- 481

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544
           +RRT   E+   D   ++ + +IE++ I V +++ G+I+ L     KS       +  + 
Sbjct: 482 KRRT---ELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
               D ++  + + T D +L  +  GK Y++
Sbjct: 539 VHNDDFIEQLISSSTHDLLLFFTNSGKVYSM 569


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/580 (38%), Positives = 356/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
            S     RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 364/606 (60%), Gaps = 33/606 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFKKSARI 78
           +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++ MS E+ L      +KSARI
Sbjct: 18  INIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRKSARI 77

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGNFG++DGDS AA RYTEARM +
Sbjct: 78  VGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEARMKK 137

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + ++  +D++ VD+   +++   EP V P+K P L+ NG SGIAVGMAT++  HN+ E
Sbjct: 138 ITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPHNLSE 197

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  A IDNPEI+ E++L+YI GPDFPTGGII    E + E+   GRG   +RA+  +
Sbjct: 198 VVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIY-GYEGVREAMLTGRGRVMMRAKTDI 256

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           E    G  CIV+TEIPY + K+ +I+KIA++I  K+I  +  I DES  + +RI++  K+
Sbjct: 257 EHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIIIILKH 316

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++   +++ ++F  + ++T F +N   L  GR PQ++P+  ++K ++ HR +V+ RR+ 
Sbjct: 317 DAV-ASVVLNTLFKNTPLQTSFAVNNIALVNGR-PQMLPMRDLVKHFVDHRHDVVVRRAR 374

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           F ++  + R+ I++GLLIA  NIDEI+ IIR+   P   K  M+ RF+L++ Q  AI+ +
Sbjct: 375 FDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIERFNLSDIQASAIIEM 434

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L  LE  ++ +E D L  +   +  +L +   Q   I  E+ E+KE +        
Sbjct: 435 RLRALTGLEYGKLIAERDELTKQIAYLKEVLENVGMQMQIIKDELLEIKEKYGDE----- 489

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
           RR+   E+  + +    +     + + + IS+ G+I        R+     V       +
Sbjct: 490 RRS---EIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPLAEYRTQNRGGVGAKGSATR 546

Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           + D ++    A   + +L  +  G     K Y +P G   S    G AIQ +I +  + D
Sbjct: 547 DEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSS---KGRAIQNVIQIEPD-D 602

Query: 602 IVTAFV 607
            V A++
Sbjct: 603 KVRAYI 608


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 355/603 (58%), Gaps = 49/603 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    +++M  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR++
Sbjct: 323 RDATAEVVMNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420
           + ++    R  IL GL +A  NIDE++A IR+     +  + +M  R             
Sbjct: 382 YLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALI 441

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S 
Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+ EVK+ F+       RRT   + S        + +I +E + V +++ G
Sbjct: 502 ERIMGIISDELAEVKDQFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS +     +S +  KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 554 YIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613

Query: 581 LSG 583
             G
Sbjct: 614 PQG 616


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 273/778 (35%), Positives = 407/778 (52%), Gaps = 113/778 (14%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+
Sbjct: 8   IAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAY 67

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDSAAAMRYT 127

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A  +L  +D++ VDF D Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 128 EIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAVGMATNIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    LA IDNPEI ++ L+EYI GPDFPTG II   R  IV++YR GRG   V
Sbjct: 188 PHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAII-NGRAGIVQAYRTGRGRIYV 246

Query: 253 RARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   + +  RG   I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   
Sbjct: 247 RARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDESDKDGLR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    D+++ +++  + +++   +NM  L  G+ P+ + L  +++ ++ HRREV
Sbjct: 307 VVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQ-PRTLNLLEMIEAFVRHRREV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------ 407
           + RR+ + ++    R  +L+GL IA +NIDEII +I                        
Sbjct: 366 VTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKPWQSGEVT 425

Query: 408 -----------RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                      R +D PK   +  S + L+  Q  AIL LRL  L  LE  ++  E  + 
Sbjct: 426 GMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKLLQEYSDK 485

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E      +L    +    I  E++E+ E F      G  R T  E++ +      + +
Sbjct: 486 LVEIAGYLEILQDPDRLRQVIRDELKELVEEF------GDDRLT--EITDSTHDLSVEDL 537

Query: 515 IEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E   V IS+ G+ +  SL  +          SA   K+ D ++  L A T   IL  
Sbjct: 538 ITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILCF 597

Query: 567 STDGKAYTL---------------PAGNLL--------------SGRGHGEAIQL----- 592
           S  GK Y L               P  NLL               G   G  I +     
Sbjct: 598 SDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYEEGHFIFMATARG 657

Query: 593 -------------------LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631
                               ++L  +  +V   V D +C ++++SS+G A   +E  +  
Sbjct: 658 IVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRA 717

Query: 632 IANTRKGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
           +  T +G   +K+  E ++  L+V      +  V E         ++ P   RG KGV
Sbjct: 718 MGRTARGVRGIKLGDEHRLISLIVPQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGV 775


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/463 (43%), Positives = 306/463 (66%), Gaps = 8/463 (1%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL      KKSAR VG+V+GK 
Sbjct: 283 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 342

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA R TEA+++  +EL+L 
Sbjct: 343 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRXTEAKLSAYSELLLS 402

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMAT IP HN++E+ +  +A
Sbjct: 403 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 462

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ S EKL EYI  PD PT   I+   E +++    GRG +R+RA + +E+     
Sbjct: 463 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 519

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323
             IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +   R+V+  ++  +D +
Sbjct: 520 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+  R++ + RR  + +  I
Sbjct: 578 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 637

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E Q +AIL L+LR L KLE
Sbjct: 638 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 697

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           E +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/719 (35%), Positives = 400/719 (55%), Gaps = 39/719 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++ E +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GETGIREAYITGKG 244

Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    VEE+  GRGS     I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 GIVLRGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K R  +P  +++ ++  + ++T F   +  +  G+ P+ + L  +L+
Sbjct: 305 ESDREGMRVVIELK-RDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQ-PRQLSLRQLLQ 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           E+L  R   L RR S+ +     R+  ++GLL A  N+DE+I I+R        K  + S
Sbjct: 363 EFLNFREHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCS 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +  L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++
Sbjct: 423 QLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDL 482

Query: 480 REVKEIFS--KSTDLG----------RRRTTFCEVSRADKATLQQAMIE-KEPITVVISN 526
           R +K  +   + T LG          ++       ++ D+ T   + +E  E   + I++
Sbjct: 483 RSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTENLSPLEPAEEAILEITH 542

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----L 581
           RG++R ++            E D +       T   +L+L+  GK Y +  G++      
Sbjct: 543 RGYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLVLTNGGKLYPVKVGDIPLTTGR 602

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           S RG      L      NQ+ V + +      +  +L++++ +G    +   E+   TR+
Sbjct: 603 SPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRR 662

Query: 638 GKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQSYK 693
           G T LK+  ++++ L      G H+ +     +LL FS +  Q+P M R   + LQ+++
Sbjct: 663 GVTILKLKDDDELLLTQFSKAGQHLILASSGGRLLRFSANDEQLPIMGR-TAMGLQAFR 720


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/607 (38%), Positives = 366/607 (60%), Gaps = 26/607 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+  G++ +KS+
Sbjct: 18  VEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSGSSHRKSS 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 78  SVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +++D VDF+  Y++   EP V PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 138 APIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNGSSGIAVGMSTNIPPHNL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LIDNP+  +  L+EY+ GPDFPTG  IV  + +I  +Y  GRG   VRA +
Sbjct: 198 GEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIV-GKNAIHAAYATGRGRLTVRAEY 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
             EE   G   IV+TEIP+Q  K+R++E+IA+ +    I  + D+RDES  D VR+V+  
Sbjct: 257 EFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSDLRDESDRDGVRVVIEC 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R  + D++ E+  +   +E+ F + +N+  +   P+V+ L   L+E++AHR+EV+ RR
Sbjct: 317 K-RGANVDVV-ENQLLDHHLESTFGV-INLALVDGEPRVLTLKETLEEYVAHRKEVVRRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           S F +   + R  IL+G L A  N+D ++ +IR+    D+ K  +   F  +  Q   I+
Sbjct: 374 SEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALEETFDFSTEQAQHIV 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  +E  +++ E + + AE E+++++LN   +  + I  E+R VK+ +      
Sbjct: 434 RMQLGSLTSMEAAEVEDEYEEVEAEIERLETILNDESELLDVIKDELRAVKDEYDDD--- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
             RRT+  E    D    ++ +I +E   VV++   +I+ + +   D        +    
Sbjct: 491 --RRTSIVE---DDGTVTREDLIPEEECLVVVTEDDYIKRMPADRFDAQHRGGKGIIGAD 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KEGD +     A+T D +L  +  G+ Y L    +  +S    G++   LI+ +  ++I
Sbjct: 546 PKEGDRVSTVFRANTHDYLLAFTNHGQVYRLRTYEIPEMSRTARGKSAVNLINFDDGEEI 605

Query: 603 VTAFVYD 609
                 D
Sbjct: 606 TAVVSMD 612


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/658 (37%), Positives = 383/658 (58%), Gaps = 40/658 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K A+IV
Sbjct: 33  VEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCAKIV 92

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR+ +V
Sbjct: 93  GEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARLEKV 152

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN++E 
Sbjct: 153 AEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNLKET 212

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+I NPEI+I ++L  I GPDFPT   I+   E ++ +Y  G+G  R+R++  +E
Sbjct: 213 IDAVIAVIRNPEITIPEILRIIPGPDFPT-SGIIIGGEGLISAYTTGKGSIRIRSKVEIE 271

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IVVTEIPYQV K  L+EKI +++  K+I  + +I D S  + +RI +  K +
Sbjct: 272 EKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHIK-K 330

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  +++  ++ ++ ++  + + M  + +   P++  +  IL  + AHRR+V+ +R+ F
Sbjct: 331 DANAQVILNQLYKMTQLQVSYGITMLAI-LDNKPKIFNIKEILTAYSAHRRDVIVKRTQF 389

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            +   ++R  IL+GL IA  NI+++I +IR    P   K  ++ RFSL+E Q DAIL +R
Sbjct: 390 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVRFSLSEVQSDAILEMR 449

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGR 494
           L+ L  LE  +I  EL+ +      +  +L +   + N I C E++EV + +       +
Sbjct: 450 LQRLTSLEVQKIIDELEEVRKLIVDLKDIL-AKPSRINDIVCTELQEVGDKYGT-----K 503

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
           R+T     S    +   + +I  E + + I+   +I+ L        K     +  L  K
Sbjct: 504 RKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQK 563

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             D +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ + +
Sbjct: 564 RDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYVSS 623

Query: 605 AFVY---DSTCKLLVVSSKGNAFI----------VEESEIIA-NTRKGKTFLKVSSEE 648
            F +   D    LL+V+ +G  FI          V++S IIA   R+G   +KV + E
Sbjct: 624 IFTFRGQDMDKDLLLVTKRG--FIKRIQLKEFGNVKKSGIIAIGLREGDELIKVEAIE 679


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 264/778 (33%), Positives = 422/778 (54%), Gaps = 63/778 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I  + L++YI  PDFPTGG I      + E+Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIY-GVSGVREAYETGRGRIVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E        I+V EIPY V K  LIEKIA L+  K++  +  I DE+  E +RIV
Sbjct: 243 AKTEIESHPTHDK-IIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +  +++  +F ++++++ F +N   L  GR P+++ L  +++ ++ HR EV+
Sbjct: 302 IDVK-RDANASVVLNKLFKMTELQSSFNVNNIALVHGR-PRLLSLKDLIRLFVEHRHEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q  
Sbjct: 360 IRRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQAR 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  L + Q+ +E + L+ +    + +L++ +     I  E+ EVKE +   
Sbjct: 420 AIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
               +RR+   E+  + +    +     + + + IS+ G+I        R+     V   
Sbjct: 479 ----KRRS---EIVYSSEEFNPEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596
               ++ D ++    A   + +L  +  GK Y L     P GN  S    G AIQ L+++
Sbjct: 532 GSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNRTS---KGRAIQNLLNI 588

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653
             + D VTA+        L V +  +   V    ++  T+ G   KT L+  S  +   V
Sbjct: 589 EAD-DKVTAY--------LRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRPRQNGV 639

Query: 654 VKVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             +T              GD+ + +   N + + F+   + EM R   GVR  +  + G 
Sbjct: 640 NAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREMGRTATGVRGITLDEDGQ 699

Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +V   IC K  +  T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 700 DEVVGMICIKDPQKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVA 757


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 359/608 (59%), Gaps = 32/608 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+E++  PDFPTGG I    + + E+Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIY-GMQGVREAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RAR  +E  G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  E +R
Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  + ++++  +F ++ ++T F +N   L  GR P+++ L   +  ++ HR +
Sbjct: 300 IVVDVK-RDANANVVLNKLFKMTPLQTSFSVNCIALVKGR-PRLLSLKDCISNFVNHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+     ++SRF L E Q
Sbjct: 358 VVIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSRFELDEVQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F 
Sbjct: 418 AKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
                 ++ D ++    A   + +L  +  G     K Y +P G   +    G AIQ ++
Sbjct: 530 SKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEG---AKNSKGRAIQNML 586

Query: 595 DLNHNQDI 602
           +++ +  I
Sbjct: 587 NIDPDDAI 594


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSARIV
Sbjct: 11  VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
               LA IDN +I++E+L+++I GPDFPT  II   +  I E+YR G+G   +RA+  + 
Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR+E++ RRS 
Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419
           F +  +  R+ IL+GL +A +              +ID    II+   K + +       
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  E+
Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             ++  FS      +RRT   E + +D     + +I +E + V +S+ G+++   L  ++
Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                    SA   KE D ++  + A+T D IL  S+ G     K Y LP
Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/723 (34%), Positives = 400/723 (55%), Gaps = 48/723 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  V  E +L  + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  + LIDNP+++ EKL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIV-GNSGIREAYTTGKG 244

Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+   +GS     I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIVLRGVATLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K R  +P  +++ ++  + ++T F   +  L  G+ P+ + L   L+
Sbjct: 305 ESDREGMRVVIELK-RDTNPQEILQHLYHQTALQTTFGAILLALVEGQ-PRQLSLRQTLQ 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           E+L  R   L RR S+ +   + RV ++ GLL A   +DE+IAI+R        K  +  
Sbjct: 363 EFLNFREHTLNRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCR 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +  L+E Q DAIL++ LR L  LE+  ++ E D+L  +   +  LL   ++    +  ++
Sbjct: 423 QLDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRRLLEDRRELLKALKKDL 482

Query: 480 REVKEIFSKSTDLGRRRTTFCEVS----RADKAT----------LQQAMIEKEPITVVI- 524
           R +K  +S       RRT    ++    +++K T          LQ    E+ P   ++ 
Sbjct: 483 RSLKRKYSDP-----RRTKILAINETPIKSEKGTTETEDNPKSKLQTPKSEQPPEEAILE 537

Query: 525 -SNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            + RG++R L        A +   E D +       T   +L+L+T GK Y +  G++ +
Sbjct: 538 FTQRGYVRRLSPTGKKPKAENGLHENDFIIQTELTDTEKDLLILNTGGKVYPVKVGDIPA 597

Query: 583 GRGHGEAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIA 633
             G       LI +       + + +V  FV   T    ++L+++ +G    +   E   
Sbjct: 598 ITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQMLLLTKQGRIKRLSMEEFAN 657

Query: 634 NTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQ 690
            +R+G T LK+  ++++       TG H+ +   + +LL F+++  Q+P M R   + LQ
Sbjct: 658 LSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLPIMGRA-AMGLQ 716

Query: 691 SYK 693
           +++
Sbjct: 717 AFR 719


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 272/790 (34%), Positives = 429/790 (54%), Gaps = 65/790 (8%)

Query: 7   SNSNTLVEENVKA--------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           S +N L EE   A        +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+
Sbjct: 11  SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70

Query: 59  HAMS-EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + MS E+ L      +KSARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPL+ GQGN
Sbjct: 71  YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGDS AA RYTEARM ++ + ++  +D+D +D+   +++   EP V P+K P LL 
Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVGMAT++  HN+ E+ +A  A +DNPEI+ E+LL+Y+ GPDFPTGGII    E
Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIY-GYE 249

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            + E+   GRG   +RAR  +E    G  CIV+TEIPY V K+ +I+KIA+LI  K+I  
Sbjct: 250 GVREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEG 309

Query: 298 LEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I DES  + +RI++  K+ ++   +++ +++  + ++T F +N   L  GR P ++ 
Sbjct: 310 ISYINDESDRNGMRIIVILKHDAV-ASVVLNTLYKNTPLQTSFAVNNIALVNGR-PMMLN 367

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413
           L  +++ ++ HR +V+ RR+ F +   ++R+ I+ GLLIA  NIDEII IIR   N D  
Sbjct: 368 LLDLVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLA 427

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  M+ RFSL++ Q  AI+ +RLR+L  LE  ++ +E + L A+    + +L S + Q  
Sbjct: 428 KQAMMERFSLSDAQASAIIEMRLRALTGLEHDKLVAERNELEAQIAYFNDVLGSRELQMK 487

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--- 530
            +  E+ EVK  +        RR+   E+  A +    +     + + + IS+ G+I   
Sbjct: 488 IVKDELLEVKAKYGDE-----RRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRT 539

Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
                R+     V       ++ D ++    A   + +L  +  G+ Y L    +  G  
Sbjct: 540 PLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLKVYEIPEGTR 599

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KT 640
              G AIQ +I +  + D V A++         V    +A  V  + II  T+ G   KT
Sbjct: 600 SSKGRAIQNVIQIEPD-DKVRAYIN--------VKRLDDAEYVNNNYIIMCTKDGTIKKT 650

Query: 641 FLKVSSEEK---MKLVVKVTGDH------------VAVVGENRKLLIFSIDQIPEMSR-G 684
            L+  S  +   +  +V   GD             V +     K + F+ + +  + R G
Sbjct: 651 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPIGRVG 710

Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-LGKRGGVGSLVPK 742
            GVR  S  +G  +  +IC +       +  +   Y +   DL  + +  RGG G     
Sbjct: 711 AGVRGISLDEGDEVVGMICIEPNSSQDVLVLSENGYGK-RTDLDEYRITNRGGKGVKTIN 769

Query: 743 GFPRSGKFLS 752
              ++GK +S
Sbjct: 770 ITEKTGKLIS 779


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 254/686 (37%), Positives = 402/686 (58%), Gaps = 44/686 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +++ Y+ YA+S I  RAIPD+RDG KPV RRI+++M EMGL     FKK
Sbjct: 5   ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGDQ+VY++LVR+AQ F  RYPLI GQGNFG+IDGD AA  RYTEA
Sbjct: 65  SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +A  +L  +D+D VDF+  +++   EP V PSKFPNLL NGTSGIAVG+ATSIP H
Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A + L  NP+IS+++++E + GPDFPTGG+I E+   + E Y+ GRG  +V+ 
Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVI-ENFAQVKEIYKTGRGIIKVKG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE+V  G   IV+TEIPYQV K+ LI+KIA+ +   +I  + DIRDE+  E +RIV+
Sbjct: 244 KAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    + +++ ++  + +E  FP+N+ VL + + P+++ +  +L+E++ HR EV+ 
Sbjct: 304 ELK-RDAKGEEVLKKLYKYTPLEKGFPVNLVVL-IDKEPKLVDIKTLLREFIKHRLEVIL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RRS + ++ +  R+ I++GLL A   ID+II  IR   +  + +  ++  F L+E Q  A
Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+LRL+ L  LE  ++  E   L  + E    L+ S   +  +I   I E +E+  K  
Sbjct: 422 VLDLRLQRLTSLEREKLLEEEKELREKIEYYKKLVAS---EGERIKVFIEETEELVKKYG 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           D  +RRT    V    + +          ITV +   G I       + +  L  ++   
Sbjct: 479 D--KRRTFIGGVKEVKEGS----------ITVAVLQDGSI-------IPVEELPLEKAPV 519

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           + I L    T+ + L+S  G+ Y +     L     G  + L    +  + IV AF+ + 
Sbjct: 520 VNI-LRVPFTEGLFLVSNRGRVYWIAGSQAL----QGSKVSL---KSREEKIVGAFIREK 571

Query: 611 -TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENR 668
              +LL+ + KG    +  +E      +G   +K++  +E + +   V   H+ +  +  
Sbjct: 572 FGNRLLLATKKGYVKKIPLAE-FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKG 630

Query: 669 KLLIFSIDQIPEMSRG----KGVRLQ 690
           ++  FS+ ++P  + G    +G++L+
Sbjct: 631 RVARFSVREVPPSTPGARGVQGIKLE 656


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 379/654 (57%), Gaps = 39/654 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L  G+ P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  ++ 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534
             +++ +        RRT        D  +++  +I +E   + ++  G+I+     + K
Sbjct: 479 ALIRDKYGDE-----RRTQIG--FDVDDISMED-LIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589
           S +     +  +   + D ++      T   I+  +  G+ Y L A  +  SGR   G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637
           I  L+ L   + I TA +    Y+    LL+ +  G   +V++S I+  AN RK
Sbjct: 591 IVNLLQLQPGEKI-TAVIPLVDYEEGKYLLMATKYG---VVKKSSIMEYANIRK 640


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 251/700 (35%), Positives = 407/700 (58%), Gaps = 50/700 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  ++  +++D VDF+  ++E + EPVV PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E  +  + +ID     N E +IE+L+E I GPDFPTG +I+  +  I ++YR GRG 
Sbjct: 187 NLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMIL-GKNGINQAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            +VRA   +E +  G   IV TE+PY V K++LIEKIAEL+  KRI  + D+RDES+ E 
Sbjct: 246 LKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSREG 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K +  +P++++  ++  + ++  + + M  L +   P ++ L  +L+ +L H+
Sbjct: 306 LRVVIELK-KDANPNVVLNQLYKHTQLQDTYGVIMLAL-VNNQPMILNLKQMLELYLKHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            EV+ RR+ F +   + R  IL+GLLIA  +IDE+I+IIR   N  + K  ++  F LTE
Sbjct: 364 EEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLMETFGLTE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  +I++E + L+    ++ ++L   K     I  EI+ +++ 
Sbjct: 424 VQAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAILADEKLLLGVIREEIKLIRDK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           +      G  R T   V   D+ T++  +I++E   + ++  G+I        RS     
Sbjct: 484 Y------GDDRKTSLGVD-DDEITVED-LIKRENTVIAMTQLGYIKRMTMDNFRSQNRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +  +   + D +   + A+T D IL  +  G     K Y +P  + ++    G A+  
Sbjct: 536 RGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEASRIA---RGTALIN 592

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSS 646
           L+ L   +  VTA +    Y++   L + +  G   +V+++ I+   N RK    L +  
Sbjct: 593 LLQLEPGEK-VTATIPLEKYENDKYLFMATKNG---MVKKTSIMEYINVRK-TGLLAIGL 647

Query: 647 EEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            E  +L+ VKVT   D + +V +    + F  D +    R
Sbjct: 648 REDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRATGR 687


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/524 (41%), Positives = 337/524 (64%), Gaps = 14/524 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+
Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GLLIA  ++DE+I IIRN   + + +  +++RF LTE Q  
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFA-- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            D  R      EV     +   + +IE+E + + +SN+G+I+ L
Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRL 516


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/593 (39%), Positives = 346/593 (58%), Gaps = 26/593 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+TQ A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EAAL ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 370/609 (60%), Gaps = 31/609 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M ++G+     +KK
Sbjct: 5   EKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE +L  ++++ VDF   +++   EP V PSK PNLL NG SGIAVGMAT++  H
Sbjct: 125 RLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  +DN +I  E+LL+++  PDFPTGGII    +   ++   GRG   +RA
Sbjct: 185 NLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIY-GVDGARDALLTGRGRIVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE G G   I+VTEIPYQV K+ +I+K A+L+  K+I  + DIRDES  +   +++
Sbjct: 244 KAEIEESG-GREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  GR P+++ L  ++ E++  R EV+ R
Sbjct: 303 ELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDGR-PRLLNLREMITEFVKFRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR+   P+     ++ RF+L++ Q  AI
Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMERFALSDLQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E  +L+A    +  +L   +++   I  E+ +++      T 
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQIIKDELIDIR------TK 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-------- 543
            G  R +  E S ++     + +I  E + + IS+ G+I+        + +         
Sbjct: 476 YGDARRSRIEYSASEMKI--EDLIPDEEVVITISHAGYIKRTNLDEFKVQSRGGMGSKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D L+    A   + +L+ +  G+      + +P GN  +    G AIQ L+++  
Sbjct: 534 TTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTA---KGRAIQNLLNIEQ 590

Query: 599 NQDIVTAFV 607
           + D + A+V
Sbjct: 591 D-DKIKAYV 598


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 254/769 (33%), Positives = 422/769 (54%), Gaps = 41/769 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ EI +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +R
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
            +     RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648
            + D+VTA++           +        ++ +I  T         + G   + +  ++
Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703
           K+  V    GD+ + +   N + + F    +  M R   GVR  +  +DGG  +  +IC 
Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSARIV
Sbjct: 11  VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
               LA IDN +I++E+L+++I GPDFPT  II   +  I E+YR G+G   +RA+  + 
Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR+E++ RRS 
Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419
           F +  +  R+ IL+GL +A +              +ID    II+   K + +       
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  E+
Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             ++  FS      +RRT   E + +D     + +I +E + V +S+ G+++   L  ++
Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                    SA   KE D ++  + A+T D IL  S+ G     K Y LP
Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 259/766 (33%), Positives = 429/766 (56%), Gaps = 54/766 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K ARIV
Sbjct: 12  IDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+Y SLV +AQ +  RYPL+ G GNFG++DGD AAA RYTEAR++++
Sbjct: 72  GDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF   ++E + EP V P+++PNLL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPHNLSEV 191

Query: 200 CEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             A + +I+N     E SI+++L+ + GPDFPTG  I+  +  I ++Y  GRG  +VRA 
Sbjct: 192 INAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIK-GIRDAYTTGRGKIKVRAV 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTE+PY V K++LIEKIAEL+  K++  + D+RDES  +   V+  
Sbjct: 251 SEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGMRVVIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ ++++  ++  + ++  F +NM  L +   P+V+ +  +L+ +LAH+ +V+ RR
Sbjct: 311 LRRDVNANVILNRLYKHTQLQETFGVNMLAL-VNNQPKVLNILQMLEYYLAHQEDVVTRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +     R  IL+GLLIA  NIDEII IIR   N +  K  ++ RF L++ Q  AI+
Sbjct: 370 TKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQAQAIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR+L  LE  ++++E + LL++ E  +S+L   K+    I  EI  V+  +      
Sbjct: 430 DMRLRALTGLERERLEAEYNELLSKIEYFESILADNKKLLGVIKEEILIVEGKYKDD--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544
             RRT F +    D     + +I+KE I + ++  G+I+ +   + +        +  + 
Sbjct: 487 --RRTGFIQ----DDEMEDEDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKGIKGMQ 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
             + D ++  + + T   I   +  G+ YT+    +   S    G AI  L+ L  ++ I
Sbjct: 541 TIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKI 600

Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKV 656
                 +++     L +V+ KG    +++  I    N RK G   + ++ ++++ + VKV
Sbjct: 601 SAIIPSEASSGEGYLFMVTKKGT---IKKCRINLFDNIRKNGLAAINLTEDDEL-IEVKV 656

Query: 657 T-GDHVAVVGENRKLLIFSIDQ-IPEMSRG----KGVRLQSYKDGGISDVICFKIC---E 707
           T GD   ++     + I   D+ I  M RG    +G+RL         +VI  ++    E
Sbjct: 657 THGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNE-----ADEVIGMQLASQGE 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  +   G  Y +        +  RGG G +  K   ++GK + +
Sbjct: 712 YLLLVSEYG--YGKRTKISEFKVQNRGGKGIICYKDNDKTGKLVGA 755


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/613 (38%), Positives = 359/613 (58%), Gaps = 62/613 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 13  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 73  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEIRMARI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 133 AHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LA++ + +I+I++L++ I  PDFPT GII  +   + E YR GRG   +RAR   E
Sbjct: 193 IDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGT-AGVKEGYRTGRGRVIMRARTHFE 251

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++G+G    I+V E+PYQV K+RL+E+I EL+  K+I  + D+RDES +    V+    R
Sbjct: 252 DIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKSGMRVVIELKR 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL+E+L HRREV+ RR+ F
Sbjct: 312 GEMPEVVLNHLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILEEFLRHRREVVTRRTIF 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  N+DEIIA+I+  + P PV                 M++R 
Sbjct: 371 ELRKARERGHILEGLAVALSNVDEIIALIKASETP-PVAKIALMEREWRSPLVEEMLARV 429

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+E Q  AIL LRL+ L  LE+ +I  E   ++   E 
Sbjct: 430 DQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYREIM---EV 486

Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           I  L++  +  ++ NQI  +     E+ +  T  G  R +  E    D     + +I  +
Sbjct: 487 ILDLIDILARPERINQIISD-----ELNAIKTQFGDARRSEIEPFGGDINI--EDLITPQ 539

Query: 519 PITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+I        RS +       A   K+ D ++    A+T D +L  S+ G
Sbjct: 540 DMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFG 599

Query: 571 KAYTLPAGNLLSG 583
           + Y +   +L  G
Sbjct: 600 RCYWIKVYDLPQG 612


>gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682593|gb|EGJ55495.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 855

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 359/608 (59%), Gaps = 32/608 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+EYI  PDFPTGG I    + + ++Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEYIKAPDFPTGGFIY-GMQGVRDAYETGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RAR  +E  G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  E +R
Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNDKKIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  + ++++  +F ++ ++T F +N   L  GR P+++ L   +  ++ HR +
Sbjct: 300 IVVDVK-RDANANVVLNKLFKMTPLQTSFSVNCIALVKGR-PKLLSLKDCISNFVNHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+     +++RF L E Q
Sbjct: 358 VVIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMNRFELDEVQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F 
Sbjct: 418 AKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
                 ++ D ++    A   + +L  +  G     K Y +P G   +    G AIQ ++
Sbjct: 530 SKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEG---AKNSKGRAIQNML 586

Query: 595 DLNHNQDI 602
           +++ +  I
Sbjct: 587 NIDPDDAI 594


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/699 (35%), Positives = 383/699 (54%), Gaps = 75/699 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 17  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPERKYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+IDGD  AA RYTE+R
Sbjct: 77  ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ E  +ALID+P ++IE L E I GPDFPTGG I+  R     +Y  GRG   +RA+
Sbjct: 197 LGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQIL-GRAGTRAAYMTGRGSVIMRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VEE+ +    +V TEIPYQV K+ L+EKIAEL+  KRI  + D+RDES  D +RIV+ 
Sbjct: 256 SHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGMRIVVE 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + ++T F  NM  L+ GR P+++ L  +++ ++  R EV+ R
Sbjct: 316 LKRDAM-ADVVLNQLYRYTPLQTSFGCNMVALNGGR-PELLNLKDLIQAFIDFREEVVSR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  +L GL IA  NIDE+I +IR    P   +  +++R           
Sbjct: 374 RTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDIAPLI 433

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L++ Q  AIL+LRL+ L  L   ++  EL  L  E      +L
Sbjct: 434 ALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDIL 493

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ EV+  F+       RRT   E+   D     + +I++E + V +S
Sbjct: 494 RSRARILGIVKAELAEVRAEFATP-----RRT---EIQDWDSTVEDEDLIQREDMVVTVS 545

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G+I        R+ +      S +  ++ D +     A+T   +L  S+ G+AY    
Sbjct: 546 HAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 605

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625
             LP   L +    G+A+  ++ L+ + + +T  +          T  ++  ++ G+   
Sbjct: 606 WRLP---LAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRR 662

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            + S+ +   R GK  +K+             GDH+  V
Sbjct: 663 NKLSDFVQVNRNGKIAMKLDE-----------GDHIVHV 690


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +R
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
            +     RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648
            + D+VTA++           +        ++ +I  T         + G   + +  ++
Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703
           K+  V    GD+ + +   N + + F    +  M R   GVR  +  +DGG  +  +IC 
Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 355/590 (60%), Gaps = 44/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSARIV
Sbjct: 11  VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
               LA IDN +I++E+L+++I GPDFPT  II   +  I E+YR G+G   +RA+  + 
Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR+E++ RRS 
Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419
           F +  +  R+ IL+GL +A +              +ID    II+   K + +       
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  E+
Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             ++  FS      +RRT   E          + +I +E + V +S+ G+++   L  ++
Sbjct: 488 LSIQNNFS-----DKRRTKITE---NHSNINMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                    SA   KE D ++  + A+T D IL  S+ G     K Y LP
Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSARIV
Sbjct: 11  VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
               LA IDN +I++E+L+++I GPDFPT  II   +  I E+YR G+G   +RA+  + 
Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR+E++ RRS 
Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419
           F +  +  R+ IL+GL +A +              +ID    II+   K + +       
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  E+
Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENPKKMFEVIKSEL 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             ++  FS      +RRT   E + +D     + +I +E + V +S+ G+++   L  ++
Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                    SA   KE D ++  + A+T D IL  S+ G     K Y LP
Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 349/603 (57%), Gaps = 22/603 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75
            + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM   + L      +KS
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA+
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +AAL +I+ PE+    L+ ++I GPDFPTGG I+ +++ + E Y  G G   +R 
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL 
Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRR 369
            K R  D +  M  +F  + ++ RF +N+  L     +  + P+ + L  IL+ +L  R 
Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR    +  ++ R+ IL+G    +  +DE I IIR   N+      ++ RF L E 
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L ++E   I+ EL    A  E I  LL+    +W  +  E++++++ +
Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       RR+T      AD    ++  I  E + V+++  GW++   ++S DL A+  +
Sbjct: 479 TDE-----RRSTLVGPG-ADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V   
Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591

Query: 607 VYD 609
            +D
Sbjct: 592 SFD 594


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/658 (37%), Positives = 372/658 (56%), Gaps = 62/658 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++  
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L +A  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL LRL  L  LE  +I +E + LL   
Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ ++ + +      G  R T    +  D +   + +I +E
Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILDEY------GDARRTVINANEVDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           K Y L    L L+ R   G  I  L+ L+  + I TA +    Y +   +++ +S G 
Sbjct: 597 KMYWLKVYQLPLASRTARGRPIVNLLPLSDGERI-TAILPVREYAADKYIIMATSHGT 653


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/693 (35%), Positives = 392/693 (56%), Gaps = 33/693 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E  L +    +K A+IV
Sbjct: 15  ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++
Sbjct: 75  GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARL 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +++ + +D VDF   +++   EP V P KFP LLANG+SGIAVGMAT++P HN++EI
Sbjct: 135 AESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLREI 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A  A IDNP+I+I++L +YI GPDFPTGGII   ++ I ++++ GRG   VR R+ +E
Sbjct: 195 AQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIF-GKKGIRQAFKTGRGKILVRGRFNIE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKN 317
              +G   I+ TE+PYQV  + L+ KI EL   K I  +  + DE+++   +R+V+  K 
Sbjct: 254 VDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIELK- 312

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++  +F  + +++ F + +N+  +G  PQ + L  ++  ++AHR+EV+ RR  
Sbjct: 313 RGAIAKVVLNQLFSKTALQSSFGV-INLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRVR 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434
           F ++  + R  IL+ L++A  NIDE+I II   R+    K  ++ RFS  + Q  AI+++
Sbjct: 372 FDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQAIVDM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE   ++ EL  L    E +  LL   ++    I  E  E+ E F        
Sbjct: 432 QLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDD----- 486

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFK 546
           RRT    VS   +    + +I+KE + V++SN G+I+ +   +           ++    
Sbjct: 487 RRTDI--VSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALV 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           E D +     A T D I+ ++ +GKAY +    +   S    G  I+ L+ ++ +++I T
Sbjct: 545 EDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITT 604

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                 + S   LL+ ++ G    V+         +G   +K+   +K+   +  TG D 
Sbjct: 605 IVSLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGKDE 664

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK----GVRL 689
           + +V    + L  S  +I +  R      G+RL
Sbjct: 665 LMLVTRQGQALRVSEAEIRDQGRASHGVIGIRL 697


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   D + VV +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/743 (34%), Positives = 406/743 (54%), Gaps = 44/743 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     FKK AR+VGEV+GK H
Sbjct: 94  EAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLGKFH 153

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI-LQG 146
           PHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE R+  + E + L  
Sbjct: 154 PHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLDGLTEAVFLAD 213

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++D VDF   ++    EP +FP++ P LL NG+SGIAVGMAT IP HN+ E+ +   AL
Sbjct: 214 LEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPHNLGELVDVLCAL 273

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NPE ++++LLEY+ GPDFPTGGII+   + I+++YR G+G   VR +  VE +   + 
Sbjct: 274 IHNPEATLQELLEYMPGPDFPTGGIIM-GNQGILDAYRSGQGRIVVRGKTDVELLDSKTK 332

Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++ EIPYQ  K+ L+EKIAEL+  K +  + DIRDES      ++    R  DP +
Sbjct: 333 RNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIVIELKRGADPSI 392

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++ L+ +++ F  NM  +  G+ P+ M L  +L+ +L  R  V+ RR+ F++    
Sbjct: 393 VLNNLYRLTPLQSSFSCNMVGILDGQ-PKQMGLKELLQAFLDFRCSVVERRAMFKLSEAQ 451

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  I++G++    N+D ++ IIR           + + FSL+E Q +AIL++ LR L  
Sbjct: 452 KRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAEAILDISLRRLTL 511

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +   E  +L+ +  K++ LL+S       I  E  E+K  FS       RR+   +
Sbjct: 512 LEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNP-----RRSMLED 566

Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLK 552
              +D   L+   +I  E + + IS +G+++ +K ++ +L        S    ++ D++ 
Sbjct: 567 ---SDSGQLEDIDVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMS 623

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTA 605
             +  H  DR+L  S  G  Y+ PA  +   +    G  +   + L+  + I     V+ 
Sbjct: 624 DFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSE 683

Query: 606 FVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVA 662
           FV D    +L V    N +I  V  +   A    G   +++   +++K V   T GD VA
Sbjct: 684 FVEDQFLLMLTV----NGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVA 739

Query: 663 VVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  +N  +++ S + I  + R    G  +RL+        D+I   + + L        +
Sbjct: 740 MASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEVASKDSEN 799

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
            N+     L ++ + G  G  VP
Sbjct: 800 NNKGTGPWLLFVSESGH-GKRVP 821


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   D + VV +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   D + VV +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/627 (37%), Positives = 360/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++AV L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 21  IEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 81  RVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 141 APLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E A   + NPE + E+LL+ ++    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 201 REVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE++     R
Sbjct: 260 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQR 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR     D  +  ++    + E Q
Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLMELLEIDEIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + +++L S ++Q   I+ E+  + E F 
Sbjct: 437 ANAILEMQLRRLAALERQKITQEHDELQAKINEYNAILASPERQRQIISEELTALVEKFG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V I+  G++        RS K     
Sbjct: 497 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYLKRTKTEDYRSQKRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 549 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 608

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        YD+   L++ +  G
Sbjct: 609 PDEQIARILAIRDYDAVPYLVLATKSG 635


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   D + VV +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 349/605 (57%), Gaps = 55/605 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+ P +SIE+L+EYI GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++  
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L +A  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL LRL  L  LE  +I +E + LL   
Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ ++ + +      G  R T    +  D +   + +I +E
Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILDEY------GDARRTVINANEVDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KMYWL 601


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 273/813 (33%), Positives = 426/813 (52%), Gaps = 96/813 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM E+GL     
Sbjct: 7   LLSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRP 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD++VR+ Q F  RYPL+ G GNFG+ID D AAA RY
Sbjct: 67  FRKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRY 126

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE+R+  +  E +L  + E  VDF + ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 127 TESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ E+ +  +ALIDNP IS +KL E I GPDFPTGG IV S + I+++Y  GRG  
Sbjct: 187 VPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIV-STDGIIDTYTKGRGSI 245

Query: 251 RVRARWCVEEV--GRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +E+V  GRG      IVVTE+P+QV K+  IEK A+L+ A +I  + D+RDES
Sbjct: 246 PMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDES 305

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
               +R+V+  K R  DP +++  ++  +D+ ++F   M  L  G+ PQ + L  +L+E+
Sbjct: 306 DRSGIRVVIELK-READPSVVLHHLYRNTDLLSKFGAIMLALVNGQ-PQQLSLRTLLQEF 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           L  R E L R  +  +Q    R  I+ GLL A   +D +I I+RN        VS     
Sbjct: 364 LNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQESL 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+ENQ DAIL + +R L  LE+ +++ E + L+ + +++++LL    Q    +  E+R 
Sbjct: 424 GLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALKKELRT 483

Query: 482 VKEIFSKSTDLGRRRT------------TFCEVSRADK---------------------- 507
           +K  ++       RRT             F  +S+  K                      
Sbjct: 484 LKRKYNDP-----RRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRVIKSKN 538

Query: 508 -------ATLQQAMIEKEPITVVISNRGWIRSLKS-----HSVD-LSALHFKEGDSLKIA 554
                   TL+ A    E + +  S+RG++R + +     + +D  S +  +  +     
Sbjct: 539 ITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSEDFTTN 598

Query: 555 LHAHTTDRIL-LLSTDGKAYTLPAGNLLSG------RGHGEAIQLLIDL----------N 597
           +   TTD+ L LL+  GKAY L   N+ S       R   + + L+  L           
Sbjct: 599 IIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATKEITDA 658

Query: 598 HNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV- 653
             + I+  F+ +   +   L++++  G    +  S++     +G T +K+  +++++ V 
Sbjct: 659 RKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVS 718

Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707
           +  TG+ V +     +LL   ID  ++P M R     +  RL+  ++     V C  +  
Sbjct: 719 LGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRKQEEL----VGCVTLDI 774

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           G   +  +  SY +        +  RGG+G  V
Sbjct: 775 GSNLLLVSQHSYGKQIPVTALRVANRGGIGQNV 807


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 381/663 (57%), Gaps = 38/663 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK    
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVK---- 473

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
             T  G  R +  E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT 657
            +T
Sbjct: 641 AIT 643


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/642 (36%), Positives = 372/642 (57%), Gaps = 40/642 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL Y+LS    RAIPD+RDG KPV+RRI++AM ++GL    A  K AR+V
Sbjct: 11  VNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD ++YD+LVRLAQ F  R PLI GQGNFGNIDGD AAA RYTE RM ++
Sbjct: 71  GEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMERL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +++D V+    ++E ++EP V P+++P LL NGT+GI VGMATSIP HN+ E+
Sbjct: 131 AEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258
            +A + L+DNP+ ++++L+EY+ GPDFPTG II   R S+ + Y+ G G  ++RA+   +
Sbjct: 191 IDATICLLDNPKATVDELMEYLPGPDFPTGAII-RGRYSMRQFYQTGHGSIKIRAKADII 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPK 316
           E+ GR    I+V+EIPY + K +L++KIAEL+  KRI  +  +RDES++   +RIV+  K
Sbjct: 250 EKDGREQ--IIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIK 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             ++   +++  +F  + +ET     M V+   R P+ M L  +L+ ++ HR EV+ RR+
Sbjct: 308 RGAMG-SVVLNQLFAHTMLETTIGCTMLVVDHNR-PRTMNLVQVLQAYIDHRLEVIVRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            F ++    R  IL+GL+ A  NI++++ IIR     +     +++RF  T+ QVDAIL+
Sbjct: 366 LFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFEFTQIQVDAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  L    + +E + L    E + +L  S + Q   I  E++E++E ++      
Sbjct: 426 MRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEIREKYADP---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
            RRT   E++  D       +I +    + +SN G+I+ + + +          +  +  
Sbjct: 482 -RRT---EITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIGMET 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           KE D ++   +A + D I   +  G       Y +P G   S  G G AI  +I +   +
Sbjct: 538 KEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEG---SRTGKGRAITNMIKVEPGE 594

Query: 601 DIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            I          +D   K +V++S+       E  +  N R+
Sbjct: 595 KICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRR 636


>gi|332667547|ref|YP_004450335.1| DNA gyrase subunit A [Haliscomenobacter hydrossis DSM 1100]
 gi|332336361|gb|AEE53462.1| DNA gyrase, A subunit [Haliscomenobacter hydrossis DSM 1100]
          Length = 845

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 372/609 (61%), Gaps = 26/609 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ +  V++   ++  Y+ Y++S I  RA+PD+RDG KPV RR+++ MS++G+ +  A 
Sbjct: 3   LDQRIIPVNIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVQRRVMYGMSDLGVTYNKAH 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPLI  QGNFGNIDGD  AA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQDWSLRYPLIDPQGNFGNIDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++A+ ++  +++D V+F + +++  +EP V P++FPNLL NG +GIAVGMAT++ 
Sbjct: 123 EARMRKIADELMADLEKDTVNFTNNFDDTLTEPSVMPTRFPNLLVNGATGIAVGMATNMM 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A ID+PEI+I++L++YI+ PDFPTGGII      I + +R GRG   +
Sbjct: 183 PHNLGEVIDGVIATIDDPEITIDELMKYILAPDFPTGGIIY-GMSGIRDGFRTGRGRVVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R +  +E    G   I++TE+PYQV  S L EKIA+L+  KRI  +  I +ES    +R+
Sbjct: 242 RGKVEIETTKTGKEQIIITEVPYQVNISSLEEKIADLVNEKRIDGISAISNESNRMGIRV 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K  ++   +++  ++  S +++ + +N   L  GR P  + +  +++E++  R EV
Sbjct: 302 VLDVKRDAI-AKVVLSQLYKYSPLQSSYGINNVALVDGR-PYTLNIKDMIEEFIKFRLEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GLLIA  ++D++IA+IR     D+ +  ++S F L+E Q 
Sbjct: 360 VVRRTKFDLRKAEERAHILEGLLIALDHLDQVIALIRASRTVDEAREGLMSNFGLSEIQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  ++++E + +    + ++S+LNS + + + I  E+ E+K  F  
Sbjct: 420 KAILDMRLQRLTGLERDKVRNEYNEIKKLIDYLNSILNSEELRRSIIKDELAEIKANFGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDL 540
           +     RRT    +  AD     + MI++E + + IS+ G+I+                 
Sbjct: 480 A-----RRTV---IEAADGEINMEDMIKEEEVVITISHLGYIKRTPVSEFRQQSRGGRGS 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
                ++ D ++     +T   +LL ++ G+ Y L    +   +    G AIQ ++ +  
Sbjct: 532 RGSKTRDEDFIEHMFVTNTHHYLLLFTSAGRCYWLKGYEIPEAAKTATGRAIQNILAI-P 590

Query: 599 NQDIVTAFV 607
            +D V AF+
Sbjct: 591 KEDKVKAFI 599


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 255/722 (35%), Positives = 399/722 (55%), Gaps = 58/722 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N +  +   V  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M E+
Sbjct: 3   NKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHEL 62

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 63  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGD 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ +++D +DF+  Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 123 GAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+ NP+ +   L+E + GPDFPTGG+++  +  I ++Y 
Sbjct: 183 VGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVM-GKSGIRKAYE 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 242 TGKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL  +
Sbjct: 302 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPKILSLKEILNYY 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L H+ EV+ RR+ + +     R  IL+GL IA  +IDEII IIR     D  K  ++  F
Sbjct: 361 LEHQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIEGF 420

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + Q  AIL++RL  L  LE  +I  E + L+ + E+  ++L S +++ N+I  +  E
Sbjct: 421 GLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILAS-RERVNEIIYQ--E 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539
           + EI +K  D  R      EV     +   + +IE+E + + +++ G+I+ L +      
Sbjct: 478 LLEIQNKFGDPRRTELLVGEVL----SLEDEDLIEEEDVIISLTHNGYIKRLPTSEFKAQ 533

Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAG 578
                 +  +     D ++  +   T D +L  +  GK Y +               P  
Sbjct: 534 NRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPVI 593

Query: 579 NLLSGRGHGEAIQLLIDL-NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIAN 634
           NLL+  G+ E IQ +I++ + N DI     + +   T K   VS              AN
Sbjct: 594 NLLN-IGNNEKIQAVINVSDKNNDIEKDLFFVTLMGTVKRTPVSD------------FAN 640

Query: 635 TR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVR 688
            R  G   + +  ++++  V+  + D   ++G +R   + F+   +  M R     +GVR
Sbjct: 641 IRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRGVR 700

Query: 689 LQ 690
           L+
Sbjct: 701 LR 702


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/635 (39%), Positives = 368/635 (57%), Gaps = 65/635 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPV RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 3   RALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF   Y+ 
Sbjct: 63  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +  LA I++  ISIE L+EY
Sbjct: 123 TEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEY 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT  II   R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K
Sbjct: 183 IPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNK 241

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +RLIEKIAEL+  KR+  +  +RDES +D +RIV+  K  ++  ++++ +++ L+ ++  
Sbjct: 242 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVG-EVVLNNLYSLTQLQVT 300

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F +NM  LS G+ P+++ L  IL  ++ HRREV+ RR+ F ++    R  IL+ L IA  
Sbjct: 301 FGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALA 359

Query: 399 NIDEIIAIIR-----------------------------NEDKPKP--------VMVSRF 421
           NID II +IR                              +D  +P        +   ++
Sbjct: 360 NIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGKY 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q  AIL+LRL+ L  LE  ++  E   LL    ++  +L +  +    I  E+  
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVA 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SL 533
           +KE ++   DL  RRT   E++        + +I +E + V +S++G+++        + 
Sbjct: 480 IKEQYN---DL--RRT---EITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQ 591
           +      SA   KE D +   L A+T D IL  S+ G+ Y +    L  + RG  G  I 
Sbjct: 532 RRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIV 591

Query: 592 LLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            L+ L  N+ I TA +    Y+  C + + ++ G 
Sbjct: 592 NLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 625


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 265/767 (34%), Positives = 426/767 (55%), Gaps = 51/767 (6%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 5   QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 65  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  GRG  +VR +  
Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTGRGTVKVRGKVE 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316
           +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES  + +R+V+  K
Sbjct: 244 IEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLK 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   PD+++ +++  + +E+ + +NM  +   R PQ++ L   L  +L HRRE++ RR+
Sbjct: 304 -RGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFLEHRREIIIRRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF L+E Q  AIL+
Sbjct: 362 RYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAILD 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E+++ ++      
Sbjct: 422 MRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYAT----- 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545
           +RRT          A   + +I  + + + +S RG+I+  +L ++         ++ LH 
Sbjct: 477 KRRTEVLMDELEGIAI--EDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHT 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIV 603
            + D ++  L       +LL +  GK + L    +  G    + + +  L+ L  ++ + 
Sbjct: 535 SDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVT 594

Query: 604 TAFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTF-LKVSSEEKMKLVVKV- 656
           T        +    L V+ +G   +V+ S   + A  RKG    + +  ++++ +V ++ 
Sbjct: 595 TVLSVREFAEDRFFLFVTKRG---MVKRSSASLYARARKGGLIAVGLRDDDELIMVREIH 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEG---- 708
             DHV +       + F+   +  M R     KGV L      G   V+   +  G    
Sbjct: 652 NDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALS-----GDDRVVACAVLPGDDTS 706

Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  I S G  Y +     L  L  RGG G    +  P++G  + +
Sbjct: 707 TEIMSISSNG--YGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 751


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK   +
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
           K  D+ R      E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/707 (35%), Positives = 392/707 (55%), Gaps = 35/707 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + A  LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 9   QERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFR 68

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 69  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAAMRYTE 128

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +LQ ++++ VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 129 SRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGMATNIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    +ALI NPEIS E+L++YI GPDFPTG  I+ +   I E+Y  GRG   +
Sbjct: 189 PHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGT-TGIREAYTTGRGSITM 247

Query: 253 R--ARW-CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R  AR   +E+ GR     I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  D
Sbjct: 248 RGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 307

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L E+L  R
Sbjct: 308 GMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGE-PQLLTLKEFLHEFLKFR 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ +  +  + R  +L+GLLIA  N+D +IA+IR   +    K  ++  + L+E
Sbjct: 367 IQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELIDSYGLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+A+      +L+  ++  + I  E+ ++K  
Sbjct: 427 PQADAILQMQLRRLTALEAEKIQREHEDLVAQIADFQDILDRPERILSIIQTEVEQLKTR 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542
           F+       RRT   ++      T    +I  +   ++++ +G+I+ +   + +  +   
Sbjct: 487 FASP-----RRTVIEQLEGEIDTT---DLIANQKAVILVTEQGYIKRMPVDTFEAQSRDG 538

Query: 543 -----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
                   KE D+++        D IL  S  G AY L A  +  G     G  I  L+ 
Sbjct: 539 RGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLKAYQIPIGSRNARGVPIVQLLP 598

Query: 596 LNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL 652
           +   + I +    D     + LV+ + G           +N R  G   + + + ++++ 
Sbjct: 599 IPREEKITSVVPVDEFREDEYLVMLTAGGYIKKTALSAFSNIRANGLIAIALETGDQLRW 658

Query: 653 VVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSYKDG 695
           V +       ++G  + + I F  D  Q+  + R  +GVR  + + G
Sbjct: 659 VRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLGRATRGVRAMALRAG 705


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/708 (35%), Positives = 405/708 (57%), Gaps = 46/708 (6%)

Query: 14  EENV--KAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDF 68
           EEN   K VS+    E +  ++ YA+S I  RAIPD+RDG KPVHRRI++AM  + G   
Sbjct: 4   EENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEGNTS 63

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSA+ V   +G  HPHGD ++YD+LV++AQPF  RY L+ GQGNFG+IDGDSAAA
Sbjct: 64  DKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDSAAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T+ AE +L+ +D++ VDF   ++E   EP V PS+ PNLL NGT+GIAVGMA
Sbjct: 124 MRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+C+   A IDNPE+S+E++++ +  PDFPTGG I+ + + IV +Y+ G+G
Sbjct: 184 TNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGT-DGIVNAYQTGQG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +R    +EE  +G   IV+TEIPYQV K+ +IEKIA+L+ +K I  + DIRDES +D
Sbjct: 243 KVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESDKD 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    ++   ++++  ++  + +E+ F + +N+  + + P+++ L  +L+ ++AHR
Sbjct: 303 GIRVIIELKQNTQANVVLNLLYKHTQLESSFGI-INLAIVDKKPKILSLAELLRHFIAHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RRS F ++  + R+ IL GLL A   ID +IA IR   +    +  +VS+   +E
Sbjct: 362 VDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSKLGFSE 421

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE+ +I  E  +L    +K+  +L+S +   + +  E  E++  
Sbjct: 422 AQAEAILKMQLRRLAALEQQKILDETTSLQLVIDKLTWILSSEENILSVVKTETSEIRTA 481

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           ++       RRT     +  D   +   +I  E   V+++ + +I        R  K   
Sbjct: 482 YAD-----ERRTQIDYTANTDFNVMD--LIPDEQTLVMLTTQNYIKRVPLDLYRQQKRGG 534

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQL 592
             +  +  K+ DS+     A+T D +L  +  G+ Y L     P G+  S    G+AI  
Sbjct: 535 RGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRVYEIPEGSRTS---KGKAIVN 591

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS 646
           L++L   +  V+A +    +D+   LL  + KG      + ++ +  R G       +  
Sbjct: 592 LLNLTDEE--VSAVIPMRDFDAEKNLLYATKKGRVGKFSQ-DLFSRPRTGGIIGITLLDG 648

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQ 690
           +E + +VV      V +     + L FS D++    RG     G+RL+
Sbjct: 649 DELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRATGRGTQGVIGIRLK 696


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/636 (38%), Positives = 367/636 (57%), Gaps = 67/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSAR+V
Sbjct: 11  VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI NPE+SI +L++YI GPDFPT  II   ++ I ++Y  GRG   +RAR  +E
Sbjct: 191 VNGCLALIQNPELSILELMDYIPGPDFPTAAII-NGKKGIEQAYLTGRGKVYMRARAEIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K 
Sbjct: 250 VDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  ++++ +++  + ++T F +NM  L +   P+   L  +L+E++ HRREV+ RR+ 
Sbjct: 310 GDVG-EVILNNLYAQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F ++    R  +L+GL IA  NID II +IRN   P    V+                  
Sbjct: 368 FDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDKA 427

Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ ++E Q  AIL+LRL  L  LE  +I +E  +LL    
Sbjct: 428 GEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L + ++    I  E+ E+K  +        RRT   E++ A      + +I +E 
Sbjct: 488 ELLHILATPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISLEDLITEEN 539

Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++  +L  +          SA   K+ D ++  L A+T D IL  ST G 
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
               K Y LP   L S    G+ I  L+ L  ++ I
Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +R
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
            +     RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648
            + D+VTA++           +        ++ +I  T         + G   + +  ++
Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703
           K+  V    GD+ + +   N + + F    +  M R   GVR  +  +DGG  +  +IC 
Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 257/735 (34%), Positives = 409/735 (55%), Gaps = 38/735 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L + YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V+  D ++    EP V PSK PNL+ NG SGIAVGMATSIP HN+ E  +A + 
Sbjct: 134 DIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNLSETVDALVY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE S+E+L+++I GPDFPTGGI+V   E +   Y  GRG   VR +  VEE G+  
Sbjct: 194 LIDHPEASVEELMQFIKGPDFPTGGIVVNGSE-LKNVYEEGRGRIVVRGKVHVEE-GKRL 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323
             IV+TEIPY V K+ LIE+IA+L+       + +IRDES +  +R+V+  PK+   + D
Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIPKD--TNED 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+L+ +L HR EV+ RR+ +  +  
Sbjct: 310 IIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAEYEYEKF 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            +R  +++GLL A   I  ++ I+RN    +  +  ++    ++E Q  AIL++RL  L 
Sbjct: 370 TKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLMETLEISEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L   ++    +  E   +KE +        RRT   
Sbjct: 430 SLEIENLQNEYSDLVKKISEVKEILEKDEKVREIMKKEFLYLKERYGDP-----RRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552
           E++  +     + +I +E + + +S++G+++S   +S          ++     E D ++
Sbjct: 482 EITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRSQRRGGKGITVSKLSEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             +    T   L ++  GKAY L    +  +GR   G+ I   ++L   + IV     + 
Sbjct: 542 FVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNLEDTERIVALVPLNG 601

Query: 611 TCKLLVVSSKGNAF---IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
             K LV+ +K        +EE E   + R  +       +E +   V  +     VV   
Sbjct: 602 KGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIRIEPGDEIVSARVSTSEKETLVVATK 661

Query: 668 RKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             ++I F +  +  M R     + ++LQ   +    DV+  +  E LT  +   + + + 
Sbjct: 662 LGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTE---KGFGKR 718

Query: 723 ENDLLGWLGKRGGVG 737
               L  + KRGG G
Sbjct: 719 TPVQLYRVQKRGGTG 733


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK   +
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
           K  D+ R      E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 273/765 (35%), Positives = 425/765 (55%), Gaps = 44/765 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE    +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +K
Sbjct: 5   EEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 65  KSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++A  +L  ++++ VDF   Y+E  +EP V P+KFP LL NG+SGIAVGM T+IP 
Sbjct: 125 VRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL++ P+I+IE+L+ +I GPDFPT G I   R+ I E+Y  GRG   VR
Sbjct: 185 HNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIY-GRKGIHEAYTTGRGIITVR 243

Query: 254 ARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           A+  VE   +  +  IVVTE+PYQV K++L+EKIAEL+ AK I     +RDES  + +RI
Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R   PD+++  ++  ++M T F +    +   R P++  L  +L+++L HRR V
Sbjct: 304 AIGLK-RDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNR-PELFTLKELLEQFLNHRRSV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F  +    R  IL+GL+ A  N+D ++A+IR    P   K  +V  F LT+ Q 
Sbjct: 362 IIRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQSFELTQIQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE  +I  E   LL +      +L+S +   + I  E+ E+K+ +  
Sbjct: 422 QAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEILSSDQVVRDIIKQELTELKDEYQD 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDL 540
                 RRT   E   A      + +I +E + V ++  G+I+        S        
Sbjct: 482 D-----RRTQIVE---ATGEINIEDLIAEEDMVVTVTRSGYIKRNPITLYASQHRGGKGK 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLIDLNH 598
           +A+  K+ D ++    A T    L ++  GK Y      L ++GR   G+AI  L++   
Sbjct: 534 TAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAGRTSLGKAIVNLLNFEQ 593

Query: 599 NQDIVTA-----FVYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKM 650
            + + T      FV D   + +V+++K     V++++++A +R    G   +K++ ++++
Sbjct: 594 GEKLATVLTVPEFVED---RYVVMATKLGR--VKKTDLMAYSRPRSGGLIGIKLADDDEL 648

Query: 651 KLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-E 707
                  G     +G E  K++ F  + +   +RG  GVR      G  S V+  ++   
Sbjct: 649 IAAGITDGKTDIFLGSEGGKVIRFDENDVRTTARGSMGVRGMRIDPG--SCVVGMEVLNH 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G T +      Y +           RGG G    +   R+GK ++
Sbjct: 707 GQTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVA 751


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 267/778 (34%), Positives = 429/778 (55%), Gaps = 51/778 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+        + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G 
Sbjct: 13  SNTTRQAVSEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGN 72

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            +    KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+A
Sbjct: 73  AYNRPHKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAA 132

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM+++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVG
Sbjct: 133 AAMRYTEVRMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVG 192

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  G
Sbjct: 193 MATNIPPHNLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTG 251

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
           RG  +VR +  +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES 
Sbjct: 252 RGTVKVRGKVEIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESD 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            + +R+V+  K R   PD+++ +++  + +E+ + +NM  +   R PQ++ L   L  +L
Sbjct: 312 RKGIRVVIDLK-RGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFL 369

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HRRE++ RR+ + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF 
Sbjct: 370 EHRREIIIRRTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFG 429

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E+
Sbjct: 430 LSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEI 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD- 539
           ++ ++      +RRT          A   + +I  + + + +S RG+I+  +L ++    
Sbjct: 490 RDTYAT-----KRRTEVLMDELEGIAI--EDLIPDDDVVITLSRRGYIKRTTLDNYQQQR 542

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-- 592
                ++ LH  + D ++  L       +LL +  GK + L    +  G    + + +  
Sbjct: 543 RGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIAN 602

Query: 593 LIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTF-LKVSS 646
           L+ L  ++ + T        +    L V+ +G   +V+ S   + A  RKG    + +  
Sbjct: 603 LLPLEKDEWVTTVLSVREFAEDRFFLFVTKRG---MVKRSSASLYARARKGGLIAVGLRD 659

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
           ++++ +V ++   DHV +       + F+   +  M R     KGV L      G   V+
Sbjct: 660 DDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALS-----GDDRVV 714

Query: 702 CFKICEG------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  G      +  I S G  Y +     L  L  RGG G    +  P++G  + +
Sbjct: 715 ACAVLPGDDTSTEIMSISSNG--YGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 770


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/588 (38%), Positives = 343/588 (58%), Gaps = 23/588 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++  +E  YL Y++S I  RA+PD+RDG KPV RRI++AM E G      F+KSA+ VG+
Sbjct: 14  IKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRKSAKTVGD 73

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+ K HPHGD +VYD++VR+AQ FV RYPL+ GQGNFG+IDGD  AA RYTEAR++++A 
Sbjct: 74  VLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEARLSRLAH 133

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L  ++++ VDF D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP HN+ E+ +
Sbjct: 134 EMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPHNLGEVID 193

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             + LID P+ISIE+L   I GPDFPTG +I+   E I  +Y+ G+G   +RAR  +E +
Sbjct: 194 GIIRLIDQPDISIEELNRIIKGPDFPTGALIL-GHEGIRRAYQTGKGSITLRARTQIETL 252

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IVVTE+PY V K++LIE+IAEL   ++I  + D+RDES      +     R  +
Sbjct: 253 QNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAIELRRDAN 312

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++  +F  + ++  F + M  L   R P+++ L  +L  +L H+ EV+ RR+ F +Q
Sbjct: 313 PHVILNQLFKYTALQQNFGIIMLALVENR-PRLLNLKQMLHYYLQHQLEVIVRRTQFDLQ 371

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GLL A   IDE+I  IR+    D+ +  ++S F  TE Q   IL+++LR 
Sbjct: 372 KALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFGFTEVQAQHILDMQLRR 431

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +++ E D L        ++L S K Q++ I  E+ E+K+ +        RRT 
Sbjct: 432 LTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDP-----RRT- 485

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDS 550
              ++  D     + +I  E + V IS+ G+I        R  +     +     KE D 
Sbjct: 486 --RITPDDGDIDIEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQGAGTKEEDF 543

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
           ++      T   ++  +  G+ Y +    +   S +  G AI  LI L
Sbjct: 544 IEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPL 591


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 419/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK    
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVK---- 473

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
             T  G  R +  E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 347/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NP  ++++L+E I  PDFPTGGII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IV+  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M+SR 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVRDMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I+ E++ +K  FS +T   RR       +  D   L   
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDL--- 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I    + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/675 (35%), Positives = 386/675 (57%), Gaps = 47/675 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE++L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  + ++++  ++  + ++  F + M  L +G  P+VM L  +L  +L H+ 
Sbjct: 306 MRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLAL-VGNEPKVMNLMEMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR        K  ++ RF LT+ 
Sbjct: 365 EVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFGLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E + ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAILADRKLLLGVIKEEILVIRDKY 484

Query: 487 SKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
                   RRT+      ++S  D       +I +E + + ++  G+I+ + SH      
Sbjct: 485 GDE-----RRTSIGFDEFDISMED-------LIPREDVVITMTKLGYIKRM-SHDTFKAQ 531

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                 +  +   + D ++     +T   ++  +  G+ Y + A  +   S    G AI 
Sbjct: 532 NRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEASRTSRGTAIV 591

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVS 645
            L+ L   + I        Y+    LL+ + KG   +++++ I   AN RK G   + + 
Sbjct: 592 NLLQLMPGEKISAVIPIEKYNDDEYLLMATKKG---LIKKTPIKEYANVRKTGLAAITLR 648

Query: 646 SEEKMKLVVKVTGDH 660
            E+++  V     DH
Sbjct: 649 EEDELIEVKYTDSDH 663


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/600 (39%), Positives = 344/600 (57%), Gaps = 61/600 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L  +D+
Sbjct: 65  GDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQ 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ +  L  + N
Sbjct: 125 ETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLYCLRN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE SI++L+E I  PDFPTGG+I      + E YR GRG   +RA+   E++ +G+   I
Sbjct: 185 PECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFEDMEKGNRQAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R   P++++ +
Sbjct: 244 VVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ F+++    R  
Sbjct: 304 LYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NID+ IAII+    P PV                 M++R           
Sbjct: 363 VLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARVDGDAAGGVAA 421

Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + L+E Q   ILN+RL+ L  LE+ +I  E  +++A    +  
Sbjct: 422 FRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLLD 481

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L   ++    I+ E++ +K  FS S    RR       +  D   L   M     + V 
Sbjct: 482 ILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPM----DMVVT 537

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +S+ G+I        RS K       A   KE D +     A+T D +L  S  G+ Y L
Sbjct: 538 LSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWL 597


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 38/674 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V ++  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE+++E I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R ++P++++  ++  + ++  F + M  L +   P+VM L  IL  +L H+ 
Sbjct: 306 MRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMSLLEILNHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  ++SRF+L++ 
Sbjct: 365 DVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSRFNLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L  +  +  ++L   K     I       KEI 
Sbjct: 425 QSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAILADRKLLLGVIK------KEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +T  + +I +E + + ++  G+I+ + + +         
Sbjct: 479 VISEKYGDDRRTAIGFDEYDIST--EDLIPREDVVITMTKMGYIKRMSNDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   + D ++     +T   I+  +  G+ Y L    +  +GR   G AI  ++ L
Sbjct: 537 GIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAGRTSRGTAIINILQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650
             ++ I TA +    +     L + + KG   +V+++ I+  AN RK         E+  
Sbjct: 597 QPDEKI-TAMIPIKDFKEGDYLFMATKKG---LVKKTPILDYANVRKTGLAAITLREDDE 652

Query: 651 KLVVKVTGDHVAVV 664
            + VK+T D   V+
Sbjct: 653 LIEVKITDDERDVI 666


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/677 (36%), Positives = 391/677 (57%), Gaps = 43/677 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        
Sbjct: 5   VFDKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  RYPL+ G GNFG++DGD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP
Sbjct: 125 EARLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            HN++E+  A + +IDN      E  IE++L+ I GPDFPTG  I+ +R  I E+YR GR
Sbjct: 185 PHNLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTR-GIEEAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  RVRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  + DES+ 
Sbjct: 244 GKIRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGR---VPQVMPLDGILKE 363
           +   +     R ++ ++++  ++  + ++  F + M  V+S G     P+V+ L  +L  
Sbjct: 304 EGMRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDY 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L H+ +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  +++R
Sbjct: 364 YLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMAR 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI 
Sbjct: 424 FELTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIGELKAILADEKLLLGVIKKEIT 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539
           E+ + +      G  R T       D     + +I +E + + ++  G+I+ +   +   
Sbjct: 484 EISDKY------GDDRKTSIGFDEFDFTV--EDLIPEENVVITMTRLGYIKRMTPDNFKS 535

Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAI 590
                  +  +   + D+++      T + ++  +  GK Y L A  +  +GR   G AI
Sbjct: 536 QNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYEIPEAGRTARGTAI 595

Query: 591 QLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKV 644
             L+ L   + I TA +    Y+    L + + KG   +V+++ I   AN RK      +
Sbjct: 596 INLLQLAPEEKI-TAVIPIREYNEDHYLFMATKKG---LVKKTPITDYANVRK-TGLAAI 650

Query: 645 SSEEKMKLV-VKVTGDH 660
           S  E  +L+ VK T +H
Sbjct: 651 SLREDDELIEVKFTDNH 667


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKT 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/713 (34%), Positives = 394/713 (55%), Gaps = 64/713 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +M+E G      + KS
Sbjct: 17  DIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMNENGHTPDKPYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG++D D  AA RYTE+R
Sbjct: 77  ARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFGSVDNDPPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +DE  VDF+  Y+ ++SEP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ALID P++++ +L+E + GPDFPT   I+  R  I  +Y  GRG   +RA+
Sbjct: 197 LGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATIL-GRGGIRNAYATGRGSIIMRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E + +    I+ TEIPYQV K+ LIE+IAEL+  KR+  + D+RDES  D +RIV+ 
Sbjct: 256 AEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIADLRDESDRDGMRIVVE 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + +++ F +NM  L+ GR P++M L  +L+ ++  R  V+ R
Sbjct: 316 LKREAV-ADVVLNQLWRHTALQSSFAVNMIALNGGR-PELMTLHDVLRAFVDFRETVVTR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------DKPKPVMV--- 418
           R+ FR+        +  GL IA  NIDE+I +IRN              D P   M    
Sbjct: 374 RTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALMARDWPAKDMAPLV 433

Query: 419 -------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q  AIL+LRL+ L  L   +I   L+ L AE  +   +L
Sbjct: 434 ELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALNKLAAEIAEYLEIL 493

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S ++ +  I  E+  VKE ++       RRT   +++ A+     + +I +E + V +S
Sbjct: 494 RSREKLFGIIKDEMLAVKEAYATP-----RRT---QITDAEGDVEDEDLIAREDMVVTVS 545

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G+I        R+ +      S +  KE D +     A+T   +L  S+ GKAY    
Sbjct: 546 HAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKAYKEKV 605

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIV 626
             LP   L + +  G+A+  ++ L   + I T           +T  ++  ++ G     
Sbjct: 606 WRLP---LAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVRRN 662

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
           + S+ +   R G   +K+   E +  V   T  D + +   + + + F++ ++
Sbjct: 663 KLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEV 715


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D +R
Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK   +
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
           K  D+ R      E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 10  DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 70  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 485

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G   D +      G + I
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREG---DFVV-----GTSRI 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           D +      SEN     LGKR        KG  R GK
Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/674 (36%), Positives = 393/674 (58%), Gaps = 38/674 (5%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPTG +++  +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E 
Sbjct: 181 FPTGALVM-GKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEH 239

Query: 286 IAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           I  L+  KRI  +  +RDES  E VR V+  K R    ++++ ++F ++ M+T F  NM 
Sbjct: 240 IVRLVQEKRIEGITAVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNML 298

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            +  G +P+++ L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I
Sbjct: 299 AIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVI 357

Query: 405 AIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            IIR    + + +  ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +
Sbjct: 358 RIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADL 417

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPI 520
             +L   ++    I  E+ EVK  FS      +RRT   E+      +L+ + +IE+  +
Sbjct: 418 ADILAKPERVSQIIKDELDEVKRKFSD-----KRRT---ELMVGQVLSLEDEDLIEESDV 469

Query: 521 TVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + +SNRG+I+ L        K     +     K+ D ++  +   T D +L  +  G+ 
Sbjct: 470 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRV 529

Query: 573 YTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIV 626
           Y L    +   GR   G  +  L+ L+ ++ I T    +S       L   +  G   IV
Sbjct: 530 YRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IV 586

Query: 627 EESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMS 682
           + + +   AN R+ G   L +  E+++  V+   GD   ++G      + F+   +  MS
Sbjct: 587 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 646

Query: 683 R-GKGVRLQSYKDG 695
           R   GV+  + ++G
Sbjct: 647 RIATGVKGVNLREG 660


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 350/578 (60%), Gaps = 22/578 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++ NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H+ E
Sbjct: 300 FVIEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYIKHQIE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+L+A    +  +L + ++     A  I E+ EI  
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDILANPERVK---AIIIEEMDEIKR 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
           K  D  R      EV     +   + +IE+E + +  SN+G+I+ L        K     
Sbjct: 475 KYADARRTELMIGEVL----SLEDEDLIEEEDVLITFSNKGYIKRLAQDEFRAQKRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +      + D +K  +   T D +L  +  G+ Y L A
Sbjct: 531 VQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKA 568


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 277/791 (35%), Positives = 426/791 (53%), Gaps = 63/791 (7%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D  +   T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+E
Sbjct: 3   DQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG+IDG
Sbjct: 63  AGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V PSK P LL NG++GI
Sbjct: 123 DPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A + LID+P+ +IE L+  I GPDFPTG  I+     I ++Y
Sbjct: 183 AVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQIL-GVSGIRQAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRA+  VE + +    IVVTEIPYQV K+RLIE IA L+  K +  + D+RD
Sbjct: 242 TTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLRD 301

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  + +RIV+  ++  + P++++  ++  + M+  F +    L  G  P+++ L  IL 
Sbjct: 302 ESDRKGMRIVIELRS-DIIPEIMLNKLYKHTQMQESFGIIQLALVKGH-PRILNLKEILV 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            +L H++EV+ R++ + +     R  IL GL IA  ++DE+IA IR+    +  +  ++S
Sbjct: 360 YYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLIS 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q  AIL++RL+ L  LE  +I+ E   ++A    ++S+L    +       + 
Sbjct: 420 KFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIMGIAKDDF 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------- 530
            +VK+ F       RR +   +    D     + +I +E I + IS++ +I         
Sbjct: 480 LDVKKRFGDP----RRTSIVPDAGEID----AEDLIAEEDIVITISHQSYIKRQALTNFR 531

Query: 531 ------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAG 578
                 R +K+ S  +     K  GD  +  L A T D IL  +  G     K Y +P  
Sbjct: 532 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPE- 590

Query: 579 NLLSGR-GHGEAIQLLIDLNHNQDIV------TAFVYDSTCKLLVVSSKGNAFIVEESEI 631
              +GR   G  I+ L+ L  N+ I       T    D    L + ++KG       SE 
Sbjct: 591 ---AGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEF 647

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK--LLIFSIDQIPEMSR-GKGVR 688
               R G   + +  +E + + VK+T  H  ++   R    + F+   +  M R   GVR
Sbjct: 648 KTARRAGLIAINLDDDEDL-IDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVR 706

Query: 689 LQSYKDGGISDVICFKICEG-----LTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPK 742
             + +   +  ++    CEG     LT  +   G+  + SE      L  RGG G +  K
Sbjct: 707 GITLRHHDV--LVSMDSCEGDSGEVLTVTEGGLGKRTDISEY----RLQTRGGKGIINLK 760

Query: 743 GFPRSGKFLSS 753
              ++G  + S
Sbjct: 761 VTNKTGDIVGS 771


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+
Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L++NP+I+ E L++ I GPDFPTGG+++  +  I ++Y  GRG   VRA+ 
Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D+ DE+  D   ++   
Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+  V+ RR+
Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R  I+ GL IA  +IDEII IIRN       K  +++ + L++ Q  AIL+
Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492
           +RL  L  LE  +I+ E   L+A       +L + +++ NQI   E+ E+++ F      
Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544
           G  R T  +V        +  + E++ I V +++ G+I+ L     KS       +  + 
Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589
             + D ++  + + T D +L  +  GK Y++               P  NLL G  + E 
Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           I  +I+++H  +    +++  T KL  V       + E   I +N   G   L +   ++
Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           +  V  ++ D   ++G  N   L F    +  M R     +G+RL+
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 359/631 (56%), Gaps = 51/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV +VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+G  +KK+
Sbjct: 6   NVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  G+G   V+ +
Sbjct: 186 LGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             +E++  G   I++ EIPYQV K++LIE+I EL+  K+I  + D+RDES +  +R+ + 
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +RREVL R
Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTTFSINTLVLENNK-PKVMSLLDIISTFVEYRREVLTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ FR++ +  +  +  G+ IA LNID++I+IIR+                         
Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREM 422

Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                D    V+     LT  QV +IL ++L+ L  LE+ +++ +L ++++   +   LL
Sbjct: 423 IELVADTKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELL 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            + +     I   + +VK      T L   R T  + S  +  T  + +I KE + V ++
Sbjct: 483 KNKEALLKLIKDGLIDVK------TKLAVPRRTTIDYSHFE--TDVEDLIPKEDMVVTVT 534

Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             G+I+  K  +                KE D +      +T   +L  S  G+ Y L  
Sbjct: 535 MSGYIKRAKLSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594

Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
             L  G     G ++  +  L+ N+ I +  
Sbjct: 595 YKLPLGEPTSRGRSLVNIFPLSENESITSVM 625


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 359/610 (58%), Gaps = 28/610 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        
Sbjct: 5   VFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +L  +++D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP
Sbjct: 125 EARLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            HN++E+    + +IDN      E S+E++LE + GPDFPTG  I+  R  I E+YR GR
Sbjct: 185 PHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATIL-GRAGIEEAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  RVRA + +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDES  
Sbjct: 244 GKIRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R ++ ++LM  +   + ++  F + M  L +   P+++ L  +L+ +L H
Sbjct: 304 EGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLAL-VNNEPRILNLKQMLEYYLQH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + EV+ RR+ + +   + R  IL+GL+ A  +IDE+I IIR   N    K  ++ RF+L+
Sbjct: 363 QEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERFALS 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K    ++   IRE  E
Sbjct: 423 EIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEK----KLLGVIRE--E 476

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD----- 539
           I   S   G  R T       D +   + +I  + + V ++N G+I+ + S +       
Sbjct: 477 IIVISDKYGDERRTAIGYDEYDMSA--EDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRG 534

Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594
              +  +   + D ++  L       ++  +  G+ Y L A  +  +GR   G AI  L+
Sbjct: 535 GKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLL 594

Query: 595 DLNHNQDIVT 604
            L   + I +
Sbjct: 595 QLMPGEKITS 604


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/697 (34%), Positives = 399/697 (57%), Gaps = 36/697 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ Y+ YA+S I  RA+PD+RDG KPV RRII++MSE G  +   +KKSARIVG+V+GK
Sbjct: 13  LKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKSARIVGDVLGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+LVR+AQ FV RYPL+ G GNFG++DGD  AA RYTE R+T+++E ++Q
Sbjct: 73  YHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVRLTRLSEYLVQ 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D V++   ++    EP V P+ FP LL NG+SGIAVG++T IP HN+ EI +A L 
Sbjct: 133 DLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHNLGEIIDATLH 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + NPE +  +L+ ++ GPDFPTGG I+  ++ +V+ Y  G+G  RVR R  +EE     
Sbjct: 193 FLHNPEATSRQLMRFVKGPDFPTGGQIINPQD-LVKVYEEGKGVIRVRGRAKLEEGHGQK 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL-FPKNRSLDPD 323
             +V+ EIPY V K+ L+ +IA+LI  +++  ++++RDES  + VR+VL   K  S    
Sbjct: 252 RRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLELKKGASFHH- 310

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            ++  ++  + +E  F +NM  L  G  P  + L   +  ++  R+E + RR+ + +   
Sbjct: 311 -ILNQLYEQTALENSFAINMVALKDG-APVQLTLRDYIASFVDFRKETILRRTRYLLDKA 368

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            +R E+++G+L A  NID +I IIRN    D+ K  ++S+  LTE Q +A+L ++LRSL 
Sbjct: 369 SKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEVQAEAVLEIKLRSLV 428

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +E+ +++ EL++LL    +   +LNS  +    IA E++ VK++F+       +R T  
Sbjct: 429 HMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLFAD------QRRTLI 482

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             S     T+Q A   +E   + +   G IR  K+ +            +L   +    +
Sbjct: 483 GFSDQQTETVQAA---EETFFIELLEYGIIRRSKTQT------------NLVDFIEVQGS 527

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D ++ L+  GK + + A  +   +  G A+  L  + +++ ++     +     +    K
Sbjct: 528 DPVMFLTNFGKIFCISAYEIPESQ-RGVALNALFPMGNDEKVLLLGTQNQELIAISEKGK 586

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           G  F ++  +I   +R G  FL +   + + ++V VT   + V+    K L   ++ IPE
Sbjct: 587 GKRFRLDVEKI--PSRGGYYFL-LDPGDMVSVIVPVTSKELVVISAQGKALRLDVESIPE 643

Query: 681 MS-RGKGVR-LQSYKDGGISDVICFKICEGLTWIDSA 715
              R  GV+ +++Y+   +    C K    +T  ++A
Sbjct: 644 RGLRTGGVKVMRTYEGDRVVGATCLKQKYIVTMTENA 680


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 354/613 (57%), Gaps = 67/613 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP ISIE L+E+I GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ + ++    R  IL+GL +A  NID II  I+                          
Sbjct: 363 RTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV+AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVSRADKATL 510
            +L +  ++ ++LN      N I  E+  + + +  ++ T++      FC          
Sbjct: 483 EILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFC---------- 532

Query: 511 QQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     
Sbjct: 533 REDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHAT 592

Query: 563 ILLLSTDGKAYTL 575
           +L  +  GK Y L
Sbjct: 593 VLCFTNVGKVYRL 605


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VDF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+
Sbjct: 130 SKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+++P+I+ E L++ I GPDFPTGG+++  +  I ++Y  GRG   VRA+ 
Sbjct: 190 GEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D+ DE+  D   ++   
Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+  V+ RR+
Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R  I+ GL IA  +IDEII IIRN       K  +++ + L++ Q  AIL+
Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492
           +RL  L  LE  +I+ E   L+A       +L + +++ NQI   E+ E+++ F      
Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544
           G  R T  +V        +  + E++ I V +++ G+I+ L     KS       +  + 
Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589
             + D ++  + + T D +L  +  GK Y++               P  NLL G  + E 
Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           I  +I+++H  +    +++  T KL  V       + E   I +N   G   L +   ++
Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           +  V  ++ D   ++G  N   L F    +  M R     +G+RL+
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+
Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L++NP+I+ E L++ I GPDFPTGG+++  +  I ++Y  GRG   VRA+ 
Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D+ DE+  D   ++   
Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+  V+ RR+
Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R  I+ GL IA  +IDEII IIRN       K  +++ + L++ Q  AIL+
Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492
           +RL  L  LE  +I+ E   L+A       +L + +++ NQI   E+ E+++ F      
Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544
           G  R T  +V        +  + E++ I V +++ G+I+ L     KS       +  + 
Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589
             + D ++  + + T D +L  +  GK Y++               P  NLL G  + E 
Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           I  +I+++H  +    +++  T KL  V       + E   I +N   G   L +   ++
Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651

Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           +  V  ++ D   ++G  N   L F    +  M R     +G+RL+
Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/590 (39%), Positives = 357/590 (60%), Gaps = 44/590 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSARIV
Sbjct: 11  VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258
               LA IDN +I++E+L+++I GPDFPT  II   +  I E+YR G+G   +RA+  + 
Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR+E++ RRS 
Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419
           F +  +  R+ IL+GL +A +              +ID    II+   K + +       
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +  +E Q  AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  E+
Sbjct: 428 EYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             ++  FS      +RRT   E + +D     + +I +E + V +S+ G+++   L  ++
Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                    SA   KE D ++  + A+T D IL  S+ G     K Y LP
Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 10  DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 70  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 485

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G   D +      G + I
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           D +      SEN     LGKR        KG  R GK
Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/592 (39%), Positives = 338/592 (57%), Gaps = 49/592 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   YL YA+S I  RA+PD RDG KPVHRRI++ M E G      ++KSARI 
Sbjct: 25  VTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSARIN 84

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVRLAQPF  R PLI GQGNFG++DGD AAA RYTEAR+ + 
Sbjct: 85  GDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARLARS 144

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D D VDF+  Y++ + EP V P+ +PNLL NG  GIAVGMAT IP+HN  E+
Sbjct: 145 ASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNPTEV 204

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+IDNP+I++++L+  I GPDFPTGG+I+  R  I  ++  G+G   VRAR   E
Sbjct: 205 IDATLAMIDNPDITLDELMTVIPGPDFPTGGLIL-GRSGIRSAFETGKGSITVRARTDFE 263

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           EV  G   IV++EIPYQV K+ L E++AEL+ AK+I  + DIRDES    VR+V+  K R
Sbjct: 264 EVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK-R 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++  +F  + ++  + +NM  L  G+ P++M L  +L  ++  R +V+ RR+ F
Sbjct: 323 DATPDVVLNHLFRFTQLQISYGINMLALDGGQ-PRLMGLRDVLSTFIRFREDVILRRARF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------DKP----KPVMV--- 418
            +     R  +L GL IA  NIDE+I +IR               D P     P++    
Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LTE Q   IL LRL+ L  LE  +I +E+  + A   ++  ++ S  
Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   +  E+  ++       +L   R +    S AD+    +++IE   + V I+  G+
Sbjct: 502 RRMEVMREELAVIR------AELNSPRRSEINDSLADQD--DESLIEPGQMVVTITRDGF 553

Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           I        R         +A   +  D +  + +AHT   +L  S+ GKAY
Sbjct: 554 IKRTPLDVFRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAY 605


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +R
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
            +     RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648
            + D+VTA++           +        ++ +I  T         + G   + +  ++
Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703
           K+  V    GD+ + +   N + + F    +  M R   GVR  +  +DGG  +  +IC 
Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 348/580 (60%), Gaps = 32/580 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM ++G  F   FKKSAR+VG+VIGK
Sbjct: 17  MKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSARVVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQP+  R+ L+ GQGNFG++DGDS AA RYTEARM+++A  +L 
Sbjct: 77  YHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMSRLAGELLA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+E   EP V P+++PNLL NG+ GIAVGMAT+IP HN+ E   A +A
Sbjct: 137 DIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLAETINATIA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPEI  ++L++ + GPDFPTGG I   R  I  ++  GRG   +RAR  VE   R  
Sbjct: 197 LVNNPEIDDDELMQIMPGPDFPTGGFIY-GRSGIRSAFMTGRGSVTMRARAIVEVNPRTH 255

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323
              +++TE+PYQV K+ LIE IA  +  K++  + D+RDES  D +RI +  K   + P+
Sbjct: 256 RQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIELKKNEI-PE 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F  N+  L  G+ P++  +  +L  +L HRR+V+ RR  F +   
Sbjct: 315 VVLNNLYKHTQLQCNFGCNLLALLDGQ-PKLCGVRELLLHFLDHRRQVVTRRCLFDLAKA 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+GLLIA   IDE+I +IR      + K  ++  F L++ Q  AIL++RL+ L 
Sbjct: 374 EARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILDMRLQRLT 433

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +IK+E + +      + ++L   K   N I  E+  V++ ++       RR+   
Sbjct: 434 GLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADP-----RRSEIM 488

Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
           +    + A L  + +I +E + V ISN G+I        R+ +      +A+  K+ D +
Sbjct: 489 D----ETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFV 544

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG 585
              + A T D +L  S  G     K Y +P AG+   G+ 
Sbjct: 545 AQLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKA 584


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/704 (36%), Positives = 393/704 (55%), Gaps = 33/704 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP+ SIE++LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRL+E+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  F  +E Q 
Sbjct: 362 IRRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFGFSEAQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E + LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RRTT  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P-----RRTTI-EMDAGDVRDIED-IIADESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++  
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594

Query: 598 HNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + V A +    ++    LL+ + KG    V      +  +KG   L++   +++   
Sbjct: 595 RPGEQVAAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAA 654

Query: 654 VKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             +  D   V+   R    + F  D++  M R  +GVR  S K+
Sbjct: 655 RHIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKN 698


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 354/613 (57%), Gaps = 67/613 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP IS+E L+E+I GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES  E +RI + 
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ R
Sbjct: 305 LK-RGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ + ++    R  IL+GL +A  NID II  I+                          
Sbjct: 363 RTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALL 422

Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                          ED  +P  +S   + L+  QV+AIL LRL  L  LE+ ++ +E  
Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYT 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVSRADKATL 510
            +L +  ++ ++LN      N I  E+  + + +  ++ T++      FC          
Sbjct: 483 EILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFC---------- 532

Query: 511 QQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDR 562
           ++ +I +E + + +S  G+ ++  L  +          SA   K+ D ++  + A     
Sbjct: 533 REDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHAT 592

Query: 563 ILLLSTDGKAYTL 575
           +L  +  GK Y L
Sbjct: 593 VLCFTNVGKVYRL 605


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+A
Sbjct: 11  VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR+
Sbjct: 71  RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN+
Sbjct: 131 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R 
Sbjct: 191 GEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V    
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409
            FR++ I  +  +  G+ IA LNIDE+++II++                           
Sbjct: 369 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIE 428

Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461
              D    V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   E  KI   
Sbjct: 429 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           DSLL    +Q             +      L + R T  E S  D+    +++I KE + 
Sbjct: 489 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 534

Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ++  G+++ +K  +            A   KE D         T   +L  S  GK Y
Sbjct: 535 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 594

Query: 574 TL 575
            L
Sbjct: 595 KL 596


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 3   DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 63  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 302 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 360 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 478

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 479 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 531 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 590

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 591 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 650

Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G   D +      G + I
Sbjct: 651 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 702

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           D +      SEN     LGKR        KG  R GK
Sbjct: 703 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 733


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/621 (38%), Positives = 357/621 (57%), Gaps = 61/621 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P +SI  L+ +I GPDFPT GI+   R  I E+Y  GRG   +
Sbjct: 184 PHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIR-GIQEAYLTGRGRIVM 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D   
Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    RS  P++++  +++ + +++ F +NM  L  G+ PQ++ L   L+ +L HR+EV
Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEVFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF------- 421
           + RR+ F ++    R  +L+GL IA  NID +IA+I+    P      +++RF       
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 422 ---------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+  Q  AIL +RL  L  LE+ +I  E + +
Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++  +L + ++    I  E+ E+ E +S       RRT   E+         + +
Sbjct: 482 IIFISELLEILANPERLMAVIREELMEMLEQYSAP-----RRT---EIQDNYVDLRLEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDG-----KAYTLPAGNLLS 582
           S+ G     K Y LP G+ ++
Sbjct: 594 SSRGKVYWKKVYELPQGSRIA 614


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 260/777 (33%), Positives = 416/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D +R
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  +   +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVIGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/744 (34%), Positives = 414/744 (55%), Gaps = 37/744 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  +      KKSA
Sbjct: 97  LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD S+YD++VR+AQ F  R PL+ G GNFG+IDGD  AA RYTE+R+
Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGMAT++P HN+
Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   +IDNP+ ++E L++ + GPDFPTGGII+ + + I ++Y  GRG   +R++ 
Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGT-DGIRDAYTTGRGSITIRSKV 335

Query: 257 CVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
            VE VGRG    +V+TEIPYQV K  L E+IA+ +  KRI  + D+RDES  + +RIV+ 
Sbjct: 336 HVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVID 395

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K+ ++ P +++ +++  + ++  F + +++  +  VP+ + L  ++  ++ H+++++ R
Sbjct: 396 LKSGAV-PQVVLNNLYKRTQLQVSFGV-IDLALVDGVPRTLTLREMIYYYIEHQKDIVTR 453

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +    +RV IL+GLLIA  NIDE++ IIR   ++ + K  M  RF + + Q +AI
Sbjct: 454 RTQFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFGIDDIQGEAI 513

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  L   ++ +++  L    E    LL   ++    I  E+ E+   FS    
Sbjct: 514 LQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHPQKLLEVIKEELTEISTRFSD--- 570

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543
             +RRT    +   +     + +I +E + + +++  +I+ L        K     +  L
Sbjct: 571 --KRRTQISALGVQNLDI--EDLIAEEDMVITVTHASYIKRLPVATYKSQKRGGKGVQGL 626

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQ- 600
             K+ D ++    A T D +L  +  GK Y L    L  G  H  G A+  ++ L+  + 
Sbjct: 627 SLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHARGSALINVLPLSEGEY 686

Query: 601 --DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              ++T   + +   L+  +  G       S+   + R G   + +   +++  V +V  
Sbjct: 687 PTAVITTRDFPAEEHLMFATKSGMVKKTAMSDYDKSRRDGLIAINLKDGDELVNVRRVKE 746

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG---LTWID 713
            ++V +     K ++F    I    RG  GVR  + KDG    ++  +I  G   L  + 
Sbjct: 747 SEYVILCSSAGKAIMFEESDIRPTGRGTSGVRGITLKDGAT--MLGMEISNGKGDLLVVT 804

Query: 714 SAGRSYNRSENDLLGWLGKRGGVG 737
             G  Y +        L KRGG+G
Sbjct: 805 EHG--YGKRTPVSEYPLQKRGGLG 826


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 387/671 (57%), Gaps = 31/671 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 10  DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 70  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 485

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVG 665
           + +G+   ++G
Sbjct: 658 RTSGEDEVIIG 668


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 260/777 (33%), Positives = 416/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D +R
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  +   +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVIGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+A
Sbjct: 5   VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR+
Sbjct: 65  RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN+
Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R 
Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V    
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409
            FR++ I  +  +  G+ IA LNIDE+++II++                           
Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422

Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461
              D    V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   E  KI   
Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           DSLL    +Q             +      L + R T  E S  D+    +++I KE + 
Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 528

Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ++  G+++ +K  +            A   KE D         T   +L  S  GK Y
Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588

Query: 574 TL 575
            L
Sbjct: 589 KL 590


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  + E       I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +R
Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
            +     RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648
            + D+VTA++           +        ++ +I  T         + G   + +  ++
Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703
           K+  V    GD+ + +   N + + F    +  M R   GVR  +  +DGG  +  +IC 
Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/739 (35%), Positives = 408/739 (55%), Gaps = 83/739 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++ T +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MADTPTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 61  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM++VA  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA +DN +I+I++L++YI GPDFPTG II   R  IV++YR 
Sbjct: 181 GMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAII-NGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  V    +G   I+V EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ +++  + +++   +NM  L  G+ P+V+ L  ++  ++
Sbjct: 300 DKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQ-PKVLNLKEMIAAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
            HRREV+ RR+ + ++    R  +L+GL +A  NIDE+I +I++                
Sbjct: 359 RHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAW 418

Query: 413 -PKPV--MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIK 448
            P  V  M+ R                     + L+  Q  AIL+LRL  L  LE  ++ 
Sbjct: 419 APGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLL 478

Query: 449 SELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            E  + L E  + +D L +S      ++   IRE  E+     + G  R T  E++ +  
Sbjct: 479 QEYADKLTEIADYLDILEDS-----ERLKRVIRE--ELEETVAEFGDERMT--EITDSAH 529

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E   V IS+ G+ ++         +      SA   K+ D ++  L A T
Sbjct: 530 DLTVEDLITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIAST 589

Query: 560 TDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
              IL  S  GK Y L   N+   S    G  +  L+ L+  + + +      Y++   +
Sbjct: 590 HSTILCFSNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYEAGSYI 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV---AVVGENRKLL 671
            + ++KG    V+++E+    R+    L+    E+        GDH+   AV   +  ++
Sbjct: 650 FMATAKGT---VKKTEMTQFARQRSVGLRAIELEE--------GDHLVGTAVTDGSCDVM 698

Query: 672 IFSIDQIPEMSRGKGVRLQ 690
           +FS       S GK VR  
Sbjct: 699 LFS-------SEGKAVRFN 710


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 387/671 (57%), Gaps = 31/671 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 3   DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 63  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 123 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 183 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 302 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 360 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 420 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 478

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 479 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 531 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 590

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 591 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 650

Query: 655 KVTGDHVAVVG 665
           + +G+   ++G
Sbjct: 651 RTSGEDEVIIG 661


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/637 (37%), Positives = 365/637 (57%), Gaps = 60/637 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G  +   +KKSA
Sbjct: 8   ITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQPF+ RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L  ++++ VD+   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN  I+I++L+++I GPDFP+  +I +  E + ++Y  G+G   +RAR 
Sbjct: 188 SEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSE-LKKAYETGKGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            +  +V  G   I+V EIPYQV KS+L+EKIAEL+  KRI  +  +RDES +D +R+V+ 
Sbjct: 247 EINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVVID 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K+ ++  ++++ +++ L+ ++  F +NM  L  G+ P+VM L  IL  ++ HRR V+ R
Sbjct: 307 IKHDAI-SEIVLNNLYSLTQLQVSFGINMVALHHGQ-PKVMSLKDILSAFICHRRSVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R  F ++    R+ +L+GL+IA  NID +I +IR                          
Sbjct: 365 RILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNMR 424

Query: 411 -------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                        DK      +    T+NQ  AIL+LRL  L  LE  ++  E D+LL +
Sbjct: 425 KSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLKK 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            EK+   L +     + I  E+  +KE +S   D+  RRT   E++    +   + +I +
Sbjct: 485 MEKLIFTLKNKSSLMDVIRQELVSIKEEYS---DI--RRT---EINNTIPSIDVENLINQ 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + V +S +G+++        + K           KE D +   L A+T D +LL S  
Sbjct: 537 RDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNY 596

Query: 570 GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           G+ Y +    L  +     G  I  L+ L+ N+ I T
Sbjct: 597 GRIYWMKVYRLPEVKRSSRGRPIINLLPLDVNERITT 633


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 355/593 (59%), Gaps = 30/593 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+VIGK
Sbjct: 15  MQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGDVIGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  L+L+
Sbjct: 75  YHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGALMLE 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  A  A
Sbjct: 135 DLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGAAIHA 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L +NP+++ E L+EY+ GPDFPTG I+   R  I E+Y  G G  RVRAR  +E   +G 
Sbjct: 195 LAENPDLTGEDLMEYVKGPDFPTGAIVC-GRSGIREAYLTGHGRVRVRARTEIETDAKGK 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV+  + R    +++
Sbjct: 254 PRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIELR-RDAVGEVV 312

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + ++T F +  N+  +  +P+++ L  +L+ ++ HR +V+ R + F ++    
Sbjct: 313 LNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKAAA 371

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  L  L
Sbjct: 372 RLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQLVGL 431

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
              ++++E + L+A    +  +L   +++  ++A  ++++  +  K  D   RRTT  E 
Sbjct: 432 NIEKLEAEYNELIATVADLKDIL---EKRERRVAIMLQKLDAVVDKYGD--ERRTTIGE- 485

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554
             A   +  + +I +E   + +S  G+IR L   +          +     K+ D+++  
Sbjct: 486 --AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQI 543

Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             A T   +L+ +  G     K Y LP G   +  G G  I   + L   + +
Sbjct: 544 FTASTHSYLLVFTNKGRVYWTKVYRLPEG---ARNGKGRPIVNFVALTEGEKV 593


>gi|118578454|ref|YP_899704.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 261/726 (35%), Positives = 409/726 (56%), Gaps = 73/726 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +M  D+   +KK
Sbjct: 6   QNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q++  +L  +D++ V     YN+E  EP V PSKFPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A+I+NP+++ E+LL  I GPDFPTG  I   R+ I ++Y  GRG  ++RA
Sbjct: 186 NLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIY-GRQGIRDAYTTGRGIIQIRA 244

Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           +  +E   +     I+VTE+PYQV K+RLIEKIAEL+  K+I  + +IRDES  E +RIV
Sbjct: 245 KAHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +P++L+  ++ L+ M+T F + +  +   R P+++ L  ++  ++ HR EV+
Sbjct: 305 VEVK-RDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNR-PRILSLREMIDCFIEHRAEVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRFS------ 422
            RR++F ++    R  IL+GL IA   +D +I +IR+   P    + +M   F+      
Sbjct: 363 TRRTNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLA 422

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                          L+E Q  AIL +RL+ L  LE  +I SE + ++    ++  +L S
Sbjct: 423 RLELPRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILAS 482

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++ +N I  E+ E+++ F    D+ R      E+S        +  I  E + V IS+ 
Sbjct: 483 DREIFNIIISELTEIRDKFG---DIRR-----SEISDTTPDISLEDTIMDEEMVVTISHT 534

Query: 528 GWIRSLKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571
           G+I   K  +VDL           + +  +E D ++    A T D +L  +  G     K
Sbjct: 535 GYI---KRSAVDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLK 591

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            Y +P GN  +    G+A+  L+++   + I T      +     L + +  G   +V++
Sbjct: 592 VYEIPEGNRTT---KGKAVVNLVNVGMEEKITTILPVKEFSEHTFLFMATRNG---VVKK 645

Query: 629 SEII--ANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR 683
           + +I  +N R G   + V+ ++  KL+     D    V +   N K + FS   +  M R
Sbjct: 646 TPLIEYSNVRSGG-IIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSMGR 704

Query: 684 -GKGVR 688
             +GVR
Sbjct: 705 VTRGVR 710


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 260/778 (33%), Positives = 418/778 (53%), Gaps = 63/778 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I ++ L+ YI  PDFPTGG I      + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +RIV
Sbjct: 243 AKTEIESHPTHDK-IIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +  +++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR EV+
Sbjct: 302 IDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKLLNLKDLIRLFVEHRHEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q  
Sbjct: 360 IRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDRFQLTEVQSR 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  L + Q+ +E + L+ +    + +L + +     I  E+ EVKE +   
Sbjct: 420 AIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEILTNEELCKKVIKDELIEVKEKYGD- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
               +RR+   E+  A +    +     + + + IS+ G+I        R+     V   
Sbjct: 479 ----QRRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQHRGGVGSK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596
               ++ D ++    A   + ++  +  GK Y L     P GN  S    G AIQ L+++
Sbjct: 532 GSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653
           + + D+VTA+        L V +  +   +    ++  T+ G   KT L+  S  +   V
Sbjct: 589 DSD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639

Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             +T                + + +   N + + F    + EM R   GVR  +  + G 
Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGT 699

Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +V   IC K  +  T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 700 DEVIGMICIKNPQEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITEKTGKLVA 757


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 252/755 (33%), Positives = 415/755 (54%), Gaps = 41/755 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A+KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR+ ++ E ++Q
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN +I IE L++Y+  PDFPTGG I      + ++Y  GRG   +RA+  + E     
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVVMRAKAEI-ETHTTH 238

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+V EIPY V K  LIE IA L+  K+I  +  + DES  E +RIV+  K R  +  +
Sbjct: 239 DKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVK-RDANASV 297

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +F ++ ++T F +N   L  GR P+++ L  +++ ++ HR +V+ RR+ + ++   
Sbjct: 298 VLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQ 356

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q  AI+ +RLR L  
Sbjct: 357 ERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQARAIVEMRLRQLTG 416

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  +     RR+   E
Sbjct: 417 LMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDA-----RRS---E 468

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
           +  + +    +     + + + IS+ G+I        R+     V       ++ D ++ 
Sbjct: 469 IVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEH 528

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              A   + ++  +  GK Y L    +  G     G AIQ L++++ + D+VTA++    
Sbjct: 529 IYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSD-DVVTAYLRVKN 587

Query: 612 CKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEEKMKLVVKVTGDH-V 661
                  +        ++ +I  T         + G   + +  ++K+  V    GD+ +
Sbjct: 588 LNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEI 647

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICFKICEGLTWIDSAGR 717
            +   N + + F    +  M R   GVR  +  +DGG  +  +IC K  E  + +  + +
Sbjct: 648 IIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQ 707

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +  +        RGG G        ++GK ++
Sbjct: 708 GYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 742


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/610 (38%), Positives = 343/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            E  L  + NPE +I++LLE I  PDFPTGGII      + E YR GRG   +RA+   E
Sbjct: 191 VEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIY-GMVGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLISYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M++R 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARNWDSSLVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++     +  +L   ++    I  E++ +K  FS      RR       +  D   L   
Sbjct: 488 VMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITP 547

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           M     + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 548 M----DMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 259/742 (34%), Positives = 400/742 (53%), Gaps = 96/742 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+
Sbjct: 2   TDHLFAKETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+AAA
Sbjct: 62  NRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT GII      + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIY-GLAGVREGYRSGRG 240

Query: 249 GFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE++GRG    +++ E+PYQV K+ L+ KI EL+  K I  + D+RDES +
Sbjct: 241 RVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   PD+++ +++  + ++  F +NM  L  G+ P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------------- 410
           RREV+ RR+ F ++    R  +L+GL +A  N+DEIIA+I+                   
Sbjct: 360 RREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMARQWRS 419

Query: 411 ------------DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                       DK +P        +  + + L+E Q  AIL LRL+ L  LE+ +I +E
Sbjct: 420 PLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQDKIVAE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
             +++     +  +L   ++    IA E+ ++K      T  G  R +  E    D    
Sbjct: 480 YRDVMDTIMDLLDILARPERVSQIIADELNQIK------TQFGDTRRSEIEPFGGDINL- 532

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V +S+ G++++                 A   K+ D ++    A+T D 
Sbjct: 533 -EDLITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDF 591

Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFV 607
           +L  S+ G     K Y LP G+  S RG           GE I  ++ +    D  T +V
Sbjct: 592 LLCFSSAGRMYWLKVYELPQGSRQS-RGKPIVNLLPLVEGEKINAILPVKGFSD--TEYV 648

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           + +T +  V  +  +AF         + R+    + V  +E   L+        AV   N
Sbjct: 649 FMATARGTVKKTPLSAF---------SNRRSAGIIAVDLDEGDYLI------GAAVTSGN 693

Query: 668 RKLLIFSIDQIPEMSRGKGVRL 689
            ++++FS         GK VR 
Sbjct: 694 SEVMLFS-------DAGKAVRF 708


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 262/758 (34%), Positives = 413/758 (54%), Gaps = 61/758 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KSA
Sbjct: 4   IHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD S+YD++VRLAQ +  RYP++  QGNFG+IDGD  AA RYTEARM
Sbjct: 64  SVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEARM 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VAE ++  ++++ VD +  Y+E   EP V P+  PNLL NG +GIAVGMAT+IP HN+
Sbjct: 124 TKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EIC   LA+ID+P ++++ L+E++ GPDFPTGG I  ++  I E+Y  G  G +VR + 
Sbjct: 184 TEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRI--TKTGIREAYATGHSGLKVRGKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314
            +EE   G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES   + VRIV+ 
Sbjct: 242 RIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   P L++  ++  + ++T + + +N+  +G  P+V+PL   ++ +L HR +V+ R
Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQTTYTV-INLSIVGGEPRVLPLLNTMQYFLDHRADVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  +L+GLL A  +IDE+I++IR  +   + +  ++ RF LTE Q  AI
Sbjct: 359 RTRYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVRFGLTEIQSQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E D L    E + S+L   K  W +I  EIR +++ +     
Sbjct: 419 LDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGDEKLLWREIKKEIRAIRDNYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RR+T  E+   ++   ++ +I  E + + ++  G+++  K              S  
Sbjct: 477 ---RRSTITEL---EEDIGKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQGRGGRGSSGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQ-LLIDL 596
             +E D         T D +L  +  G     K Y LP     +GR   G  I+ LL  L
Sbjct: 531 KLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPE----AGRDAKGTHIRNLLPSL 586

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +++I +      +D     +  + KG      I E   I   T  G   + +   +++
Sbjct: 587 REDENIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNI---TSAGLIAINLQPGDEL 643

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKI 705
             V  V   DHV +   N K + F  D++    R      G+RL+  +D     V+   +
Sbjct: 644 IGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQGVIGIRLREGEDDA---VVSMAL 700

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             G    D A      SE      LGKR  VG    KG
Sbjct: 701 VPGG---DEASELLAVSEC----GLGKRTPVGDYPAKG 731


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/631 (37%), Positives = 360/631 (57%), Gaps = 59/631 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD RDG KPVHRR+++AM EMG D+   +KKSAR+V
Sbjct: 11  VSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++ + VDF   Y+E++ EP V P++ PNLL NG++GIAVGMAT+IP HN+ EI
Sbjct: 131 AHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPHNLTEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +AL+D+ ++   +L   + GPDFPT GI++   E  +E+YR GRG   +RAR  +E
Sbjct: 191 LNACIALVDDDDLPDSELFRLVPGPDFPTAGILL-GNEGAIEAYRSGRGRVVMRARAEIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   I V+E+PYQV K++LIE+IAE++  KR+  + D+RDES +    +     R
Sbjct: 250 TDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++ +++  + +++ F +NM  L  G  PQ + L   LK +L HRREV+ RRS F
Sbjct: 310 DANAEVVLNNLYQHTALQSVFNINMVALLDG-APQTLGLRDALKAFLRHRREVVTRRSIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR------ 420
            ++    R  IL+GL +A +N+D +IA+IR    P            +P +V+       
Sbjct: 369 DLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLAERG 428

Query: 421 ----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L S  +
Sbjct: 429 EPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILGSDAR 488

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGW 529
               I  E+  +++ +  +     RR+       AD   +  + +I +E + V  ++ G+
Sbjct: 489 LMAVIRAELVAIRDQYGDA-----RRSEIV----ADTGVIANEDLIAEENMVVTFTHAGY 539

Query: 530 IRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           I++    + +          A   KE D ++    A T   +L  S  G     K Y LP
Sbjct: 540 IKAQPVTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLP 599

Query: 577 AGNLLSGR-GHGEAIQLLIDLNHNQDIVTAF 606
                SGR   G+ I  L+ L  ++ I T  
Sbjct: 600 Q----SGRSARGKPIVNLLSLAPSEGITTVL 626


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G       K
Sbjct: 10  DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RYTE
Sbjct: 70  KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+IP 
Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   +R
Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  E +R+V
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  + R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV+
Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q  
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+  
Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 485

Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
               +RRT     EV         + +IE+E + + +SN+G+I+ L +            
Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +   GR   G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
             + I T      D   K L  +++        +   +N R  G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G   D +      G + I
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           D +      SEN     LGKR        KG  R GK
Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 270/793 (34%), Positives = 410/793 (51%), Gaps = 73/793 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  VSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNISEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ +P+I I  L+  I  PDFPT GII      I + Y+ GRG   +RAR   E
Sbjct: 191 IDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIY-GISGIKDGYQTGRGRVIMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ +G+   I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    R
Sbjct: 250 ELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVILNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDYFLRHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------------ 420
            ++    R  +L+GL +A  N+DEIIA+I+    P P    R                  
Sbjct: 369 ELRKARERGHLLEGLAVALSNVDEIIALIKA--APTPAEAKRGLMARTWRSSLVEEMLRR 426

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q  AIL+LRL+ L  LE+ +I SE   +L  
Sbjct: 427 AMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYKEIL-- 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +KI  LLN         A  I E+  I  +    G  R +   +   D +T  + +I  
Sbjct: 485 -DKIRDLLNMLANSERITAIIIEELTAIKGQ---FGDPRRSEVVIDAQDLST--EDLITP 538

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + V +S+ G+I+S         K       A+  +E D +     A+T D IL  S+ 
Sbjct: 539 TDMVVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSL 598

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624
           G+ Y +   N+  G     G  I  L+ L  ++ I        +D T  + + ++ G   
Sbjct: 599 GRVYWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFDDTRYVFMATAGGTVK 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI-PEMS 682
               SE       G   + +   + +  V    G H V +  +  K + F  + + P   
Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGR 718

Query: 683 RGKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             +GVR    K G    VI   +   E +T + +    Y +  +        RG  G + 
Sbjct: 719 NARGVR--GMKLGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIA 776

Query: 741 PKGFPRSGKFLSS 753
                R+GK +++
Sbjct: 777 INTNKRNGKVVAA 789


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/717 (35%), Positives = 395/717 (55%), Gaps = 39/717 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL     F+K
Sbjct: 6   ERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA RYTE+
Sbjct: 66  CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTES 125

Query: 135 RMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  ++   +L+ ++ + VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+IP 
Sbjct: 126 RLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTG  I+  R  I ++Y  GRG   +R
Sbjct: 186 HNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQIL-GRSGIKDAYTNGRGSITMR 244

Query: 254 ARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
               +E +   GR     I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES  D 
Sbjct: 245 GVAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDG 304

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  + ++  F  NM  L  G  PQV+ L   L+ +L  R 
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGE-PQVLTLKDFLEVFLDFRV 363

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+++ ++  + R  +L+GLL+A  N+D II +IR   +    K  +V +F L+E 
Sbjct: 364 EVITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQFGLSEV 423

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I++E + LL +   +  +L   ++  + I  E+ ++    
Sbjct: 424 QADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDILERRERVDHIIEEELNQL---- 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540
            K+T    RRT   E+ + D   +   +I  E   ++++ +G+I+ +   +         
Sbjct: 480 -KTTHATPRRT---EIIQEDGELIDLDLIANEQAVILLTEQGYIKRMPVSTFGQQSRATR 535

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
             SA   KE D ++  L     D IL  S  G  Y L A  + S      G  I  ++ +
Sbjct: 536 GKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSSRTARGVPIVQMLPI 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             N+ I +      +   C L++++ +G      +   S I AN   G   + +S  +++
Sbjct: 596 PKNEKITSMLAVSEFSEDCYLIMLTRQGYIKKTVLSAYSNIRAN---GLIAITLSEGDQL 652

Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKI 705
           + V     +   ++G  + + I F  D       G+  R ++S K  G  ++I   I
Sbjct: 653 RWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKLKGTDEIISVDI 709


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/593 (38%), Positives = 355/593 (59%), Gaps = 30/593 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+VIGK
Sbjct: 19  MQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  L+L+
Sbjct: 79  YHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGALMLE 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  A  A
Sbjct: 139 DLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGAAIHA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L +NP+++ E L+EY+ GPDFPTG I+   R  I E+Y  G G  RVRAR  +E   +G 
Sbjct: 199 LAENPDLTGEDLMEYVKGPDFPTGAIVC-GRSGIREAYLTGHGRVRVRARTEIETDAKGK 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV+  + R    +++
Sbjct: 258 PRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIELR-RDAVGEVV 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + ++T F +  N+  +  +P+++ L  +L+ ++ HR +V+ R + F ++    
Sbjct: 317 LNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKAAA 375

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  L  L
Sbjct: 376 RLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQLVGL 435

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
              ++++E + L+A    +  +L   +++  ++A  ++++  +  K  D   RRTT  E 
Sbjct: 436 NIEKLEAEYNELIATVADLKDIL---EKRERRVAIMLQKLDAVVDKYGD--ERRTTIGE- 489

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554
             A   +  + +I +E   + +S  G+IR L   +          +     K+ D+++  
Sbjct: 490 --AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQI 547

Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             A T   +L+ +  G     K Y LP G   +  G G  I   + L   + +
Sbjct: 548 FTASTHSYLLVFTNKGRVYWTKVYRLPEG---ARNGKGRPIVNFVALTEGEKV 597


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 344/570 (60%), Gaps = 20/570 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G       KKSA
Sbjct: 9   IRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDSAAA RYTEAR+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +++ +++D V+F   Y+ E+ EP V PS+FPNLL NG +GIAVGMAT+IP+HN+
Sbjct: 129 SKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATNIPTHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NP+ +   L++ + GPDFPTGGI++  +  I  +Y  GRG   VRA+ 
Sbjct: 189 GEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES  D   +    
Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRISIDV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ +++  + ++T F  NM  ++ G+ PQ M L  IL  +L H+REV+ RR+
Sbjct: 308 RRDTSASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKDILVAYLTHQREVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
           +F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  ++L++ Q  AIL+
Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLIDGYALSDKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I+ E   L+A    +  +L + +++ +QI  +  E+ EI +K  D  
Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVALIADLKDIL-AHQERVDQIIYD--ELLEIQTKFGDAR 483

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
           R      +V+  +   L +       + V ++  G+I+ +              +  ++ 
Sbjct: 484 RTELQVGDVTNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + D +   L   T D +L  +  GK Y +
Sbjct: 540 NDEDFVDQMLATSTHDTLLFFTNKGKVYRM 569


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/668 (36%), Positives = 398/668 (59%), Gaps = 41/668 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+G       +K
Sbjct: 7   DQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +++ + ++ VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+  A + LIDN     E +I++L++ + GPDFPTGGII+ +   I E+YR GRG  
Sbjct: 187 NLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGT-SGIKEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL   K+I  + D+RDE++ E +
Sbjct: 246 RVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGM 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  + R ++P +++  +F  + ++  F + +N+  +   P+V+ L  +L  +L H++
Sbjct: 306 RIVVELR-RDVNPSVVLNLLFKHTQLQDTFGV-INLALVNGEPKVLNLYDLLNYYLIHQK 363

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ F +   + R  I++GL+IA  NIDE+I+IIR+     + K  ++ RF LT+ 
Sbjct: 364 DVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDE 423

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K    ++   IRE  EI 
Sbjct: 424 QSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEK----KLLGVIRE--EII 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
           + +   G  R T  E+   +     + +I +    + ++  G+I+ + + +         
Sbjct: 478 AIADKYGDDRKT--EIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGK 535

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  +   E D +   L   +   ++  +  G+ Y + A  +   S    G AI  LI L
Sbjct: 536 GIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPL 595

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649
             ++ I TA +    Y+    L + +  G   IV+++ I    N RK G   + +  ++K
Sbjct: 596 QPDEKI-TAMIPIKEYEDDKYLFMATRNG---IVKKTPIKDYENIRKNGLAAINLREDDK 651

Query: 650 MKLVVKVT 657
           + + VKVT
Sbjct: 652 L-IEVKVT 658


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/677 (36%), Positives = 382/677 (56%), Gaps = 57/677 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSA+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD  AA RYTE+R+ +
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ ++ EP V P++FPN+L NG  GIAVGMAT IP HN+ E
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+DNP++S E L+E++ GPDFPTGG+++  R    ++Y  GRG   +RA   V
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAATTV 260

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV++ IPYQV K+ +IE+IAE    K+I  +  ++DES  D VR+V+  K 
Sbjct: 261 EEIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELK- 319

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  ++  + M+T F  NM  L+ G+ P+ + L G L  +L  R +V+ RR++
Sbjct: 320 RDATAEVVLNQLYRFTPMQTSFGCNMLALNGGK-PEQLTLRGFLSAFLDFREDVIARRTA 378

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKP---VMVSR------------- 420
           + ++    R  +L GL +A  N+DE++A IR+  D P+    +M  R             
Sbjct: 379 YLLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALI 438

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL+LRL+ L ++   ++  EL++L A+ +    +L+S 
Sbjct: 439 DDPTHKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSR 498

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I  E+  ++E F+       RRT   + +        + +IE+E + V ++  G
Sbjct: 499 ERIMGIIREEMTAIREEFAVP-----RRTEIVDWA---GDMDDEDLIEREDMVVTVTAGG 550

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     LS    KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 551 YIKRTALADFRAQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 610

Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
            L GR   G+AI  ++ +     I      D         +++  +SKG+      S+  
Sbjct: 611 PLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFT 670

Query: 633 ANTRKGKTFLKVSSEEK 649
              R GK  +K   E++
Sbjct: 671 NVMRNGKIAMKFEGEDE 687


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 261/748 (34%), Positives = 404/748 (54%), Gaps = 89/748 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L ++ NPE +I++L+E I  PDFPT GII    + + E YR GRG   +RA+   E
Sbjct: 191 VTACLHVLHNPECTIDELIEIIPAPDFPTAGIIY-GVQRVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    R
Sbjct: 250 DLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKSTQLQDNFGMNMVAL-VDNQPRLLNLKQMLEYFLQHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407
            ++    R   L+GL +A  NIDE IAII                               
Sbjct: 369 ELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVREMLARAE 428

Query: 408 ------RNEDKPKPVM-------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                 RN  +P+ ++          + L+++Q   IL +RL+ L  LE+ +I +E   +
Sbjct: 429 TDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKEV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-KSTDLGRRRTTFCEVSRADKATLQQA 513
           +AE   +  LL   ++    I  E++EV+  F     D GRR  +F EV+  +  T  + 
Sbjct: 489 MAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRR--SFIEVNATELFT--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +SN G++        R+ K       A   K  D ++    A+T D IL 
Sbjct: 545 LITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDTILC 604

Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFVYDS 610
            S  G+ Y L     P G+  S RG           GE I +++ +   QD    +V+ +
Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTS-RGKPIVNMFPLIEGEKITVILPIKGYQD--NQYVFMA 661

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668
           T    V  ++ + F        +N RK        +E    +   +T G H V +  +  
Sbjct: 662 TSLGTVKKTRLSDF--------SNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAG 713

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           K + F  + +  M R  +GVR  +  +G
Sbjct: 714 KAVRFDENDVRPMGRTARGVRGMNLGEG 741


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/704 (34%), Positives = 400/704 (56%), Gaps = 72/704 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIVG+V+GK HPH
Sbjct: 9   FLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGDVMGKYHPH 68

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ +++
Sbjct: 69  GDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIALEMLRDINK 128

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF+  Y+E + EPVV PS+FPNLL NG +GIAVGM T+IP HN++E+      L++N
Sbjct: 129 DTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVISGLHLLMEN 188

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+ +  +L+E I GPDFPTG I++  +  I ++Y  G G   +RA+  +EE   G   I+
Sbjct: 189 PDATTAELMEAIPGPDFPTGAIVM-GKSGIRKAYETGHGTVTLRAKVDIEEQSNGKSRII 247

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V EIPY V K+ LI +IA+L   K+I  + DI DES  +   +     R + P +++ ++
Sbjct: 248 VHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSPSVVLNNL 307

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           + L+ M++ F  NM  +  G  PQV+ L  IL+ +L H+ +V+ RR++F ++    R  I
Sbjct: 308 YKLTLMQSSFTFNMLAIVDG-TPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKAQARAHI 366

Query: 390 LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL IA  +ID II+IIRN       K  +++ + L++ Q  AIL++RL  L  LE  +
Sbjct: 367 LEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAILDMRLVRLTGLEREK 426

Query: 447 IKSE----------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + +E            ++LA +E+++S+          I  E+ E++E F      G  R
Sbjct: 427 VDAEYKKTLEAIADFKDILAHEERVNSI----------IYQELLEIQEKF------GDDR 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548
            T   V     +   + +IE+E + + +++ G+I+ L +            +  +   + 
Sbjct: 471 RTELMVGEV-LSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGGRGVQGMGVHDD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593
           D ++  +   T D +L  +  GK Y +               P  NLL     GE IQ +
Sbjct: 530 DFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLD-LSEGEKIQTV 588

Query: 594 IDLNHNQDIVTAFVYDSTCKLLV----VSSKGNAFIVEESEIIANT-RKGKTFLKVS-SE 647
           I+++  +   + F++ +T + +V    V+  GN   + ++ + A T R+G   L VS ++
Sbjct: 589 INVDPEKRNDSHFLFFTTVQGVVKRTSVTEFGN---IRKNGLKAITLREGDELLNVSITD 645

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690
               +++   G +     EN      ++ Q+   + G +G+RL+
Sbjct: 646 GNQNIIIGTHGGYAVSFSEN------AVRQMGRTASGVRGIRLR 683


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 353/619 (57%), Gaps = 62/619 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE SI++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T  E S  D +T  +
Sbjct: 488 DVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        RS K       A   KE D +     A+T D +L
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603

Query: 565 LLSTDGKAYTLPAGNLLSG 583
             S  G+ Y L    + SG
Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 353/602 (58%), Gaps = 31/602 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   E+ V  V +   +   YL Y++S I  RA+PD+RDG KPVHRR++ A SEM     
Sbjct: 3   NNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRHN 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+VIGK HPHGD SVYD++VR+AQ F  RYPL  GQGNFG+IDGDS AA 
Sbjct: 63  RPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE R+T +AE +L  ++++ V F   Y++    P V PSKFPNLL NG++GIAVGMAT
Sbjct: 123 RYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  + LI NP+  IE L+++I GPDFPT G+I   RE I+++Y+ GRG 
Sbjct: 183 NIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIA-GREGILQAYKKGRGI 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             ++A   + +V +    I++TEIPYQV K++LIE +A+L+  K+I  + DIRDES+ E 
Sbjct: 242 VTIKAVAEIVQV-KDREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREG 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R  +  +++  ++  + M+T F + M  L     P    L G+L+ ++ HR
Sbjct: 301 MRIVVVLK-RGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           R+V+ +R  F ++    R  IL+GL  A  +I+E+I  IR     +  +  ++S+F  +E
Sbjct: 360 RDVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSKFEFSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL +RL+ L  LE  +I +EL  L+ + + +  +L+  ++ +  I  E+ +VK+ 
Sbjct: 420 RQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWLKFVLSDVREIYKIIVSELEDVKKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSH 536
           ++       RRT        D + L+ + +I  E + V ++N G I+ +        K  
Sbjct: 480 YADP-----RRTQIT----GDLSDLEDEDLIADEQMVVTVTNTGLIKRIPVEEYRVQKRG 530

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLS-GRGHGEAI 590
              L  +  KE D +     A T   +L+ +  GK Y      LP G   S G+     +
Sbjct: 531 GKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLPLGTRTSKGKSLANVV 590

Query: 591 QL 592
           QL
Sbjct: 591 QL 592


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 371/628 (59%), Gaps = 34/628 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L++++V+ +     ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    
Sbjct: 5   NLIDQDVEHI-----MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQ 59

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYR
Sbjct: 60  AYRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYR 119

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM +++  +L  + +D VDF+  Y++   EPVV PS+FPN+L NG+ GIAVGMAT+
Sbjct: 120 YTEARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATN 179

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E    ++ NP+ ++++L++ I GPDFPTGGII+  R  I  +Y  GRG  
Sbjct: 180 IPPHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKI 238

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +EE+ +G  CI+VTEIPY V K+RL+E IA L+  KRI  + D+RDE+  D  
Sbjct: 239 ILRSKTSIEEI-KGRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGM 297

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +  +++  +F L+ ++    + +  L  G VP+V+ L  IL+E++  + +
Sbjct: 298 RIVIELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKG-VPKVLTLKQILQEYIDFQVD 356

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I I+   +N  + K  +++RF L++ Q
Sbjct: 357 VIRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFGLSDIQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + I  + L  L  +E  +I  EL+ + A+    + +L + ++  + I  E+  ++E + 
Sbjct: 417 AEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEEVEAIQEKYG 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                  RRT    VS        + +I  E   V  +N G+I+ +              
Sbjct: 477 DE-----RRTQIENVS---GEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKG 528

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           ++ +  +E D +       + D IL ++T G+AY +    L  G     G  I+ L++L+
Sbjct: 529 VTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLLELS 588

Query: 598 HNQDIVTAFV----YDSTCKLLVVSSKG 621
            + +++ A +    +D    +++V+ +G
Sbjct: 589 -DDNLIAAMIKVEDFDDDKYIVMVTKRG 615


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 345/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NP  S+++L+E I  PDFPTGGII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M+SR 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I+ E++ +K  FS      RR       +  D   L   
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDL--- 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I    + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 356/606 (58%), Gaps = 36/606 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G       KKSA
Sbjct: 9   IHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDSAAA RYTEAR+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+
Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG   VRA+ 
Sbjct: 189 GEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES  D   V    
Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRVSIDV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ +++  + ++T F  NM  ++ G+ PQ M L  IL  +L+H+REV+ RR+
Sbjct: 308 RRDASASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKEILVAYLSHQREVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
           +F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  +SL++ Q  AIL+
Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLIDGYSLSDKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I+ E   L+A    +  +L + +++ +QI  +  E+ EI +K  D  
Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVALIADLKDIL-AHEERVDQIIYD--ELLEIQTKFGDAR 483

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
           R      +V+  +   L +       + V ++  G+I+ +              +  ++ 
Sbjct: 484 RTELQVGDVTNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590
            + D +   +   T D +L  +  GK Y +               P  NLL   G  E I
Sbjct: 540 NDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD-EKI 598

Query: 591 QLLIDL 596
           Q +I++
Sbjct: 599 QTVINV 604


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/745 (34%), Positives = 402/745 (53%), Gaps = 59/745 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G  +   ++
Sbjct: 8   ESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHYNKQYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 68  KSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAVGMAT+IP 
Sbjct: 128 VRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  A IDN +I+I +L+E + GPDFPTGG I+ +   I  +Y  GRG   VR
Sbjct: 188 HNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRGKIIVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +  +E        I++TEIP+ V K+ L+EKIAEL+  K+I  +  IRDES +  +R+V
Sbjct: 247 GKTDIES-DSLKHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNKSGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  + + DL++  ++  + ++T F + M  L  G +P+ M L  I+  +   R EV+
Sbjct: 306 IELKKHA-NTDLILNQLYSYTSLQTTFNVMMLALDQG-IPKTMTLKDIIVAFTNFREEVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF-------- 421
            +R+ F +     +  IL G++IA  NIDE+I IIR   N ++ K  +++R         
Sbjct: 364 TKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNISDVYD 423

Query: 422 -----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             LTE Q  +IL LRL+ L   E  +++ EL+NL+ E +    +
Sbjct: 424 LVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKAYLEI 483

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +    +  E+ ++KE FS +      R T  E    ++    + +I +E + V +
Sbjct: 484 LGSRDKLLETMKFELNQIKEQFSTT------RLTTIENQEFEQDI--EDLIPEEEVVVTV 535

Query: 525 SNRGWIR--SLKSHSVDLSALHFKEGDSLK---IALH---AHTTDRILLLSTDGKAYTLP 576
           +  G+I+   L ++         + G S++   +  H    +T   IL  S  G+ Y L 
Sbjct: 536 TLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLK 595

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSK-GNAFIVE 627
              L  G  +  G  I  LI +  N+ I            DS  K ++ ++K GN    +
Sbjct: 596 VYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRND 655

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
            S+       GK  +++   + +  V     G+HV +  +N K + F +  +        
Sbjct: 656 LSDFKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTS 715

Query: 687 VRLQSYKDGGISDVICFKICEGLTW 711
             +++ K      VI   I +G+  
Sbjct: 716 DGVKAIKLAANDAVISMTILKGINC 740


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 360/623 (57%), Gaps = 56/623 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL+YA+S I  RA+PD RDG KPVHRRII+AM + G D+   F+KSAR+VG+VIGK
Sbjct: 15  MKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQFRKSARVVGDVIGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RYTE ++ +++E ++ 
Sbjct: 75  YHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYTETKLAKISEFLIS 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V+F++ Y++ ++EPVV P++FPNLL NG  GIAVGMAT+IP HN+ E+ +  LA
Sbjct: 135 DIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGTLA 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DN +IS+ ++++ I GPDFPTGGII+   E I   Y  GRG  ++R    +EE  R  
Sbjct: 195 YLDNNKISVSEIMKKIPGPDFPTGGIILGKNE-IKNGYEKGRGSIKIRGEIEIEEGSRDR 253

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++  +PYQV K+ LIEKIA LI  K++  + D+RDES  E VRIV+  + + ++ ++
Sbjct: 254 KLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIVIELR-KGVNQEI 312

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  S +E+ F  N   ++  + P+++ L   ++ +++ R + + +R+ F ++   
Sbjct: 313 IINQLYKFSPLESSFGFNTLAINEKK-PELLNLKQFIEIFVSFREKTIIKRTLFDLKKAK 371

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------------- 419
            R  IL GL IA  NIDEII+IIR    P    VS                         
Sbjct: 372 DRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSKLNKNILNINELSD 431

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              + L++ QV AIL+LRL+ L  +   +I +EL  L     K+  +LN   +  N I  
Sbjct: 432 LDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKILNDKTELINLIKN 491

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+  +K  FS      R+     +++  +     + +I+KE + V ++N+G+I+     +
Sbjct: 492 ELIGIKNKFSTP----RKTKIVDQITSVE----VEDVIQKEQVIVTVTNKGYIKRTPITN 543

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR 584
           +            +  +E D +      +T   +L  S  G     K + +P G   S +
Sbjct: 544 IKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEG---SNQ 600

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV 607
             G+++  L+ ++ NQ  V++ +
Sbjct: 601 SKGKSLHNLLPID-NQSYVSSIM 622


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 349/611 (57%), Gaps = 57/611 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+  A+KKSAR+V
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEVRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ +I
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATNIPPHNLTDI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A  AL+D P   IE L+  +  PDFPT GII      + + YR GRG   +RA   VE
Sbjct: 191 CNALFALLDAPATDIESLISIVQAPDFPTAGIIY-GLSGVRDGYRTGRGRVVMRATCHVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V     
Sbjct: 250 DLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSGMRVYIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 310 RGENADVVLNNLYKQTQMQDTFGMNMVALIDGQ-PRLLNLKEMLDAFLRHRREVVTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR----- 420
           F ++    R  IL+GL +A  N+DEI+ +I++ + P            K  MV       
Sbjct: 369 FDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMVEEMLARI 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+E Q   IL ++L+ L  LE  +I +E   ++A+   
Sbjct: 429 DPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKEIMAKIAD 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ +V++ F      GRR T    V  A   +++  +I+ E +
Sbjct: 489 LLDILANPARITQIIREELTQVRDQFGD----GRRSTI---VENAQDMSMED-LIKPEEM 540

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G++        R+ K       A   K+ D ++    A+T D IL  S  G+ 
Sbjct: 541 VVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRL 600

Query: 573 YTLPAGNLLSG 583
           Y L   N+  G
Sbjct: 601 YWLKVYNVPQG 611


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 341/602 (56%), Gaps = 59/602 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+A
Sbjct: 5   VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR+
Sbjct: 65  RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN+
Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R 
Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V    
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410
            FR++ I  +  +  G+ IA LNIDE+++II++                           
Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422

Query: 411 ---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461
              D    V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   E  KI   
Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           DSLL    +Q             +      L   R T  E S  D+    +++I KE + 
Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLATPRNTAIEQS-VDEID-AESLIPKEEMV 528

Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ++  G+++ +K  +            A   KE D         T   +L  S  GK Y
Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588

Query: 574 TL 575
            L
Sbjct: 589 KL 590


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 341/602 (56%), Gaps = 59/602 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+A
Sbjct: 11  VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR+
Sbjct: 71  RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN+
Sbjct: 131 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R 
Sbjct: 191 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V    
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410
            FR++ I  +  +  G+ IA LNIDE+++II++                           
Sbjct: 369 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 428

Query: 411 ---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461
              D    V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   E  KI   
Sbjct: 429 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           DSLL    +Q             +      L   R T  E S  D+    +++I KE + 
Sbjct: 489 DSLLMDIVKQG------------LLDAKAKLATPRNTAIEQS-VDEID-AESLIPKEEMV 534

Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ++  G+++ +K  +            A   KE D         T   +L  S  GK Y
Sbjct: 535 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 594

Query: 574 TL 575
            L
Sbjct: 595 KL 596


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/611 (37%), Positives = 362/611 (59%), Gaps = 28/611 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +  + +   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+EMG  +    
Sbjct: 4   IEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQPT 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VGEV+ K HPHGD +VY +LVRLAQP+  RY L+ GQGNFG++DGDS AA RYT
Sbjct: 64  RKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++A  +L+ +D++ VDF++ +++   EP V P++FPNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN++E  +  +A ID    + +  L+ YI  PDFPTGG I      + E++  GRG   
Sbjct: 184 PHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIY-GYAGVKEAFETGRGRIV 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RAR  +E    G   I+VTEIPYQV K++L+  IA+L+  +RI  + +I DES+    +
Sbjct: 243 LRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGGM 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  +  +++  +F L+ +++ F +N   L  GR P ++ L  ++ E++ HR 
Sbjct: 303 RIVIEVK-RDANASVVLNHLFKLTPLQSYFNVNNIALVKGR-PCLLNLKQLIGEFVDHRH 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RRS F ++    R  IL+GLLIA  NIDE+I IIR   N  + +  +  RF L+E 
Sbjct: 361 DVVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRERFELSEL 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E D L+   + ++ LL         +  E+ EVKE F
Sbjct: 421 QARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDELLEVKEKF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT   E+  + +    +     + + + IS+ G+I        RS     V
Sbjct: 481 GDP-----RRT---EIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGV 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D ++    A     +LL +T G+ + LP   +  G     G AIQ ++++
Sbjct: 533 GSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNILNI 592

Query: 597 NHNQDIVTAFV 607
             + D +TA +
Sbjct: 593 EAD-DRITACI 602


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 347/605 (57%), Gaps = 55/605 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI +P +SIE+L+E+I GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 246 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L +A  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I +E + LL   
Sbjct: 425 KAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ E+        + G  R T    +  D +   + +I +E
Sbjct: 485 AGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KMYWL 601


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  +I + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 345/578 (59%), Gaps = 28/578 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ EI  A + +ID+      E +IE++L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAE++  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    + ++ ++L+  ++  + ++  F + M  L +   P+VM +  +L  +L H+ 
Sbjct: 306 MRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLAL-VNNEPRVMNILDMLNYYLQHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  ++ RF L+E 
Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMERFGLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAILADRKLLLGVIKEEILIIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                 G  R T       D +   + +I KE + + ++  G+I+ + SH          
Sbjct: 485 ------GDERRTSIGFDEFDIS--MEDLIPKEDVVITMTKLGYIKRM-SHDTFKSQNRGG 535

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             +  +   + D ++     HT   I+  +  G+ Y +
Sbjct: 536 KGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRM 573


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 368/611 (60%), Gaps = 27/611 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSARIVGEV+GK
Sbjct: 11  LKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGEVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQ +  RY L+ GQGNFG++D D  AA RYTEAR+++++E +L+
Sbjct: 71  YHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLSKISEELLE 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ ++  D ++    EP+V PSKFPNLLANG++GIAVGM T+IP HN+ E+ +  LA
Sbjct: 131 DIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNISELVDGFLA 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NP+ISIE+L+E+I GPDFPTGG I+  R  I E Y  G+G F +R +  VEE  +  
Sbjct: 191 LIKNPQISIEELIEFIPGPDFPTGGEII-GRAGIREMYTTGKGSFTIRGKLHVEE-DKKK 248

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDES-AEDVRIVL-FPKNRSLDP 322
             IV+TEIPY V K+ LI+KI E   A+   L ++DIRDES  E +RIV+  P N  ++ 
Sbjct: 249 KKIVITEIPYNVSKADLIKKIVEY--AENSSLQIKDIRDESDKEGLRIVIEIPNN--VNE 304

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ +R+ F  + 
Sbjct: 305 DIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQFFYKQ 364

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPV--MVSRFSLTENQVDAILNLRLRSL 439
             ++  IL+GL+ A  +ID II++IRN ED+   +  ++  F  TE Q  AI++LRL  L
Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELMEMFDFTETQAKAIVDLRLGRL 424

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KLE  ++  + + L+ + +    L+   ++ + +I  E+  +K  +  S     R++  
Sbjct: 425 TKLEISKLIEDYNELVKKMKIEKELIGKDEKVYEKIIEELTYIKAQYGDS-----RKSEI 479

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
            +    +    +  +I  + + + ++ +G++        R+ K     ++       D++
Sbjct: 480 LDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTFRTQKRGGKGVTGSSLMNDDAI 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              ++ H   + L  ++ GK Y L    +   S    G+ I   I+++ ++ I+T    D
Sbjct: 540 MEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGKHISKYINIDKDEKILTMLSVD 599

Query: 610 STCKLLVVSSK 620
           +    L   +K
Sbjct: 600 NFVGELFFVTK 610


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 344/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NP  S+++L+E I  PDFPTGG+I      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIY-GMSGVREGYRTGRGRVIMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R
Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
           +++    R  +L+GL +A  NID+ IAII+    P PV                 M+SR 
Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I  E++ +K  FS      RR       +  D   L   
Sbjct: 488 IMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDL--- 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I    + V +S+ G+I        RS K       A   KE D +     A+T D +L 
Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 253/747 (33%), Positives = 390/747 (52%), Gaps = 83/747 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    V + +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 7   LFSGQVISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA RY
Sbjct: 67  YRKCARVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRY 126

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +  E +L  V E  VDF D ++    EP V P++ P LL NG SGIAVGMAT+
Sbjct: 127 TETRLASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALID P++S EKLL  I GPDFPTGG I+ S E I ++Y  G+G  
Sbjct: 187 IPPHNLNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEII-STEGITDAYTKGKGSI 245

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            VR    +EE+      R    IVVTE P+QV K+  IEK+AEL+   RI  + D+RDES
Sbjct: 246 AVRGVTRMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDES 305

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R   P  ++  ++  +D++  F   +  L  G+ P+ + L  +L+E+
Sbjct: 306 DREGIRVVIEIK-REFSPQTVLSRLYHQTDLQCNFGAILLALVNGQ-PRQLTLRQMLQEF 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L  R   L RR +  +Q   RR  I++GLL+   N+D  I I+RN       K  + SR 
Sbjct: 364 LNFREVTLTRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSRL 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           + +E+Q DAIL + +R L  LE   +++E D L+A  +++  LL   ++    +  E+R 
Sbjct: 424 NFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQRLLGDRRELLKALKKELRS 483

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------------------- 513
           +K  +        RRT    V +      +Q                             
Sbjct: 484 LKRKYGDP-----RRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGRGSRGAGEQRGGEG 538

Query: 514 --MIEKEPITVV-----------ISNRGWIRSLKSHSVDLSALHFK-------EGDSLKI 553
                + P+T V            +++ ++R L S        H K       E D    
Sbjct: 539 KKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKSAQSRGGESDFSVN 598

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            + A T + + +L+  GKAY L   ++  +  R  G  I  L+  +  +D+    + +  
Sbjct: 599 TIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSPSATKDVAPGNLPEIV 658

Query: 612 CKLLVVSSKGNA----FIVEE--------SEIIANTRKGKTFLKVSSEEKMKL-VVKVTG 658
             + V+S   +A     + ++        SE+   T +G T +K+  +++++  ++   G
Sbjct: 659 AGMFVLSENADATDLVTLTQQGKIKRLPLSELSDITNRGVTAVKLKDDDELRYAMLSKPG 718

Query: 659 DHVAVVGENRKLLIFSID--QIPEMSR 683
           + V +     +LL F ++  Q+P M R
Sbjct: 719 EQVVLATSGGRLLRFELNDEQLPPMGR 745


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/667 (35%), Positives = 377/667 (56%), Gaps = 42/667 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N  V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++     R+V+  K  ++   +++ +++  + ++  FP NM  L  G VP+ + LDG ++
Sbjct: 313 TSGRTGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++ 
Sbjct: 371 HWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+
Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+ E +        RRT        D     + +I +E + V I+  G+ +  ++ S  
Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585
                   +     +E D +       TT R LL  T+       K Y LP G   S   
Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+     ++I        YD    L++ + +G       SE  +N   G   +
Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658

Query: 643 KVSSEEK 649
            +  +E+
Sbjct: 659 NLRQDEE 665


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/702 (35%), Positives = 392/702 (55%), Gaps = 37/702 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   L   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM + G+       KSA
Sbjct: 17  VQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYDSGITPNKPHSKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 77  RTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGSIDGDSAAAMRYTEARL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  + ++ VD+   Y+E   EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 137 AKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L+E + GPDFPTGG+I   RE I+ +Y  GRG   +++ +
Sbjct: 197 GEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVI-RGREGIISAYETGRGSLTIQSSY 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
            ++E   G   I++TEIPYQV +S L++KI EL+  K++P + ++ D +  +  V I++ 
Sbjct: 256 KIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNVHDGADRNSPVDIIIE 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++ P +++  +F  + ++  + + M  L  G VP+ + L  IL  ++ H+ +V+ R
Sbjct: 316 LKQNAI-PQVVLNKLFKHTQLQVGWGVIMIALVDG-VPRTLSLREILHYYILHQEDVIRR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ F ++  + R  I++GLLIA  +IDE+IAIIR     K     +  RF L+E Q  AI
Sbjct: 374 RTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLSERFGLSEAQCTAI 433

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQWNQIACEIREVKEIFSK 488
           L ++LR L  LE  +++ EL  L   KEKI     +L         I  E++E+K  F+ 
Sbjct: 434 LQMQLRRLTGLEREKLQEELAEL---KEKIAYYKRILADEHLMRQVIKEELQEIKGRFNT 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                 RRT    ++   K    + +I  E + V ++N G+I+ L        K     +
Sbjct: 491 P-----RRT---RIAGPAKDIDVEDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGM 542

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNH 598
             ++ KE D ++    A T + +L  S+ GK Y      +     H  G A+  L+ L+ 
Sbjct: 543 QGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDK 602

Query: 599 NQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVK 655
            + IV A         + L+  +K          +   TR+ G   + +   +++  V +
Sbjct: 603 GESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAINLREGDELIAVKR 662

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           V  G+ VA+V    K + +   ++  M R   GVR  +  DG
Sbjct: 663 VKPGEKVAMVSSAGKAISWDESEVRAMGRDTMGVRGMTVPDG 704


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 361/634 (56%), Gaps = 57/634 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+   +KK+
Sbjct: 6   NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  G+G   V+ +
Sbjct: 186 LGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES +  +R+ + 
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +R+EVL R
Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFIEYRKEVLTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ FR++ +  +  +  G+ IA LNID++I+IIR+                         
Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEM 422

Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                D    V+     LT  QV +IL ++L+ L  LE+ +++ +L ++++  ++   LL
Sbjct: 423 IELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELL 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            + +     +   + E+K        L   R T  + S  +  T  + +I KE + V ++
Sbjct: 483 GNKESLLKLVKNGLEEIK------AKLAVPRKTTIDYSHFE--TDVEDLIPKEDMVVTVT 534

Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572
             G+I+ +K  +                +E D +      +T   +L  S  G     K 
Sbjct: 535 MSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           Y LP G+  S    G ++  +  L+ N+ I +  
Sbjct: 595 YKLPLGDPTS---RGRSLVNIFPLSENEVITSVM 625


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/643 (36%), Positives = 370/643 (57%), Gaps = 67/643 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  ++P+ISIE L+E+I GPDFPTGGII   +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F  + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409
           + F ++    R  IL+GL +A  NID II  I++                          
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423

Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                         ED  +P  +    + L+  QV+AI+ LRL  L  LE+ ++ +E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L++  ++ ++LN      N I  E+  + + +  +     R+T+  E SR D +  ++ 
Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RKTSIVE-SRIDFS--RED 535

Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDRI 563
           +I +E + + +S  G+ ++  L  ++         SA   KE D ++  I   +H T  +
Sbjct: 536 LIPEEQMVLTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHAT--V 593

Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604
           L  +  GK Y L    +  + RG  G  +  L+ L+ N+ I  
Sbjct: 594 LCFTNVGKVYRLKVYEVPQASRGAKGRPMVNLLPLDENETITA 636


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 264/770 (34%), Positives = 407/770 (52%), Gaps = 53/770 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLNTGQVVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +  E +L+ + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV S   I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIILRGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R  +P+ ++  ++  + ++T F   +  L  G+ P+ + L  +L+E
Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQ-PRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R        K V+  +
Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LTE Q DAIL + LR L  LE+  ++ E   L  +   +  LL   ++    +  ++R
Sbjct: 424 LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRRLLEDRRELLKSLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMI-EK------------EPITVVI 524
            +K  +  +     RRT         + DK   Q +   EK            EP  +  
Sbjct: 484 TLKRKYGDT-----RRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISPEEQPPEPAILEF 538

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPAGNL--- 580
           + RG++R L   S    A      +   I     +T   +L+L+T GK Y +  G++   
Sbjct: 539 TQRGYVRRLAPGSKKAKAETITGDNDFLIQTEITNTHQDLLILNTSGKVYPVKVGDISPI 598

Query: 581 --LSGRGHGEAIQLLIDLNHN--QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633
              S RG    I LL +      + I+  F+      T  +++V+ +G    +   E+  
Sbjct: 599 SARSPRGM-PLITLLTNTAQGNVEGILGRFILPETKDTHDMVIVTKQGRIKRLSLEELTN 657

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSI--DQIPEMSRGKGVRLQ 690
            +++G T LK+  ++++        +H  ++G +  + L F+I  DQ+P M R   + LQ
Sbjct: 658 VSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCLRFAINDDQLPVMGRA-AMGLQ 716

Query: 691 SY---KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           S+   K   I   +  +  E L  +   G +   S   L    G RG +G
Sbjct: 717 SFRILKSQQIISCVTIEQEENLLLVTQEGYAKRISSGSLRA--GNRGDLG 764


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 258/746 (34%), Positives = 403/746 (54%), Gaps = 61/746 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G  +   ++
Sbjct: 8   ESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHYNKQYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 68  KSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAVGMAT+IP 
Sbjct: 128 VRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  A IDN  I+I +L+E + GPDFPTGG I+ +   I  +Y  GRG   VR
Sbjct: 188 HNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRGKIIVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +  +E        I++TEIP+ V K+ L+EKIAEL+  KRI  +  IRDES +  +R+V
Sbjct: 247 GKTDIES-DSLKHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNKSGIRVV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  + + DL++  ++  + ++T F + M  L  G +P+ M L  I+  +   R EV+
Sbjct: 306 IELKKHA-NTDLILNQLYSYTSLQTTFNVMMLALDQG-IPKTMTLKDIIVAFTNFREEVI 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF-------- 421
            +R+ F +     +  IL G++IA  NIDE+I IIR   N ++ K  +++R         
Sbjct: 364 TKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVSDVYD 423

Query: 422 -----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             LTE Q  +IL LRL+ L   E  +++ EL+NL+ E +    +
Sbjct: 424 LVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKAYLEI 483

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +    +  E+ ++KE FS +      R T  E    ++    + +I +E + V +
Sbjct: 484 LGSRDKLLETMKFELNQIKEQFSTA------RLTTIENQEFEQDI--EDLIPEEEVVVTV 535

Query: 525 SNRGWIR--SLKSHSVDLSALHFKEGDSLK---IALH---AHTTDRILLLSTDGKAYTLP 576
           +  G+I+   L ++         + G S++   +  H    +T   IL  S  G+ Y L 
Sbjct: 536 TLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLK 595

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSK-GNAFIVE 627
              L  G  +  G  I  LI +  N+ I            DS  K ++ ++K GN    +
Sbjct: 596 VYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRND 655

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGK 685
            S+       GK  +++   + + + VK     +HV +  +N K + F +  +       
Sbjct: 656 LSDFKHIASNGKIAIRLDEGDSL-ISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRT 714

Query: 686 GVRLQSYKDGGISDVICFKICEGLTW 711
              +++ K  G   VI   I +G+  
Sbjct: 715 SDGVKAIKLAGNDAVISMTILKGINC 740


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 341/604 (56%), Gaps = 54/604 (8%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L   ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G    
Sbjct: 7   DPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSAR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA 
Sbjct: 67  KPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAM 126

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+ + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT
Sbjct: 127 RYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGASGIAVGMAT 186

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN  EI +A LA+I+ P+++++ LL+Y+ GPDFPTGG I+  R  I  ++  GRG 
Sbjct: 187 NIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTIL-GRAGIRSAFETGRGS 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K++  + DIRDES    
Sbjct: 246 VIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++  R 
Sbjct: 306 MRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQ-PRLMGLKDVLEAFIRFRE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------- 409
           +V+ RR+ F +     R  +L GL+IA  NID +IA+IR                     
Sbjct: 365 DVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMARGWDAAD 424

Query: 410 --------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                    D+   ++  +  LTE Q   IL LRL+ L  LE  +I+ EL  +     +I
Sbjct: 425 VAPLLELIHDEGNVIVDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEVAV---RI 481

Query: 462 DSLLNSGKQQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           + LL         IA   R ++    E+ S   +L   R T       D+    +++IE 
Sbjct: 482 NDLLEI-------IASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQT--DESLIEP 532

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + V I+  G+I        R+        +A   +  D +  + +AHT   +L  S+ 
Sbjct: 533 GQMVVTITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSG 592

Query: 570 GKAY 573
           GKAY
Sbjct: 593 GKAY 596


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 349/610 (57%), Gaps = 55/610 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT  II   R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------ 418
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P    V            
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+        + G  R T    +  D +   + 
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--ED 557

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL 
Sbjct: 558 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 617

Query: 566 LSTDGKAYTL 575
            S  GK Y L
Sbjct: 618 FSDFGKMYWL 627


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 359/612 (58%), Gaps = 51/612 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+     ++KSA+ 
Sbjct: 25  SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ V+F D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + I++ EI YQV K+ +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    +++M  ++  + M+T F  NM  L+ GR P+ + L   L  ++  R +V+ RR++
Sbjct: 323 RDATAEVVMNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREDVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420
           F ++    R  IL GL +A  NIDE++A IR+     +  + +M  R             
Sbjct: 382 FLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALI 441

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S 
Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++  + I+ E+ EVK+ F+       RRT   + S        + +I +E + V +++ G
Sbjct: 502 ERIMSIISDELAEVKDQFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS +     +S +  KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 554 YIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613

Query: 581 LSGR--GHGEAI 590
             G     G+AI
Sbjct: 614 PQGSRTSKGKAI 625


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 265/758 (34%), Positives = 416/758 (54%), Gaps = 56/758 (7%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RAIPDLRDG KPV RRI+  MSE+GL     FKKSARIVGEV+GK HPH
Sbjct: 18  YMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKKSARIVGEVMGKFHPH 77

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++YD+LVR+AQPF  RYPL+ GQGNFG+ID D  AA RYTEARM  +AE +LQ +D+
Sbjct: 78  GDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEARMETLAEELLQDIDK 137

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V     ++   SEP V P+K PNLL NGTSGIAVGM TSIP HN+ EI +A   LI +
Sbjct: 138 NTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPHNLVEIIDAISLLIKD 197

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE S+  LL +I GPDFPTGG+I+++  SI   Y+ G+G   VRA   +EE G GS  IV
Sbjct: 198 PECSVSDLLRHIKGPDFPTGGMIMDA-ASIPSIYQEGKGRITVRAIAEIEESG-GSSQIV 255

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V+EIPY   K+ +IE+I       R   + +IRDES +    V+    R  DP++++  +
Sbjct: 256 VSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIELKRGADPNVVLNLL 315

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           F  + ++T F +NM V+   + P+VM L  IL+ +L+HR  V+  ++ + ++   +R  I
Sbjct: 316 FKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSKTEYDLEQASKRAHI 375

Query: 390 LKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++GL  A  +ID ++ IIRN    E+  K +M +   +T+ Q  AIL++R+  L  +E  
Sbjct: 376 VEGLTKATRSIDTVVDIIRNSANSEEASKNLMET-LEVTQEQSSAILDMRMGKLTGMEIE 434

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++ +E  +L+A+  +   +L S ++ +  I  E+ E+K  +      G  R T  ++   
Sbjct: 435 KLLNEYKDLVAKINEYRMILASDEKVYGIILDELNEIKAKY------GDARRTRIDLGNG 488

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT 559
               ++  +I  E I ++++ +G+I+S    S           +  + GD     ++  T
Sbjct: 489 TDFNIED-VIPDEDIVLMVTKKGYIKSTPLESYRKQGRGGKGVIGVRTGDE-DFVVNILT 546

Query: 560 TDRI---LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-----IDLNHN-QDIVTAFVYDS 610
           T R+   +++++ GKAY L + +++         +LL     ID + N Q +++    + 
Sbjct: 547 TTRLSKTVIITSKGKAYVL-SNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTRKEEV 605

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVG 665
             K LV++++       E E   N R   + +K  S  +   V+  +      D + +  
Sbjct: 606 QGKQLVITTRSGKIKKTEFEAFLNVR--ISGIKAISLNEGDRVIDASLTSREDDTIIIST 663

Query: 666 ENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGR---- 717
           +N  ++ F +DQ+  M R      G+RL+   +   ++++  +    L      G     
Sbjct: 664 KNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASEDTRFLLTATEKGGGKRT 723

Query: 718 --SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             S  RS+N        RGG+G     G  + GK + +
Sbjct: 724 CLSEYRSQN--------RGGLGVKNIYGLEKIGKVIGT 753


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/726 (35%), Positives = 394/726 (54%), Gaps = 71/726 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A  AL+ +PE+ IE+L+E +  PDFPT GII  +   + E YR GRG   +R R  VE
Sbjct: 191 LDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTV-GVKEGYRTGRGRVVMRGRTHVE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    R
Sbjct: 250 DLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420
            ++    R  IL+GL +A  N+DE+IAII+    P              PV   M+ R  
Sbjct: 369 ELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRAA 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ ++ SE   ++     +
Sbjct: 429 MEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIADL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L +  +    I  E+ E+++ F       +RR+    V+ A   +L+   I  + + 
Sbjct: 489 LDILATPARVTAIINDELTEIRKQFGD-----KRRSEI--VANAQDLSLED-FITPQDVV 540

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ +       A   KE D +     A+T D IL  S+ G   
Sbjct: 541 VTLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVY 600

Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFI 625
             K Y +P G   S  G G+ I  L  L   +    I++   +D    + + +S G    
Sbjct: 601 WLKVYEVPQG---SRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
              S+  AN RK         E    +  ++T   + V +V    K + F+ D +  M R
Sbjct: 658 TPLSD-FANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGR 716

Query: 684 G-KGVR 688
             +GVR
Sbjct: 717 ATRGVR 722


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/611 (38%), Positives = 353/611 (57%), Gaps = 57/611 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT  II   R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D +
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRR
Sbjct: 327 RIVIEIK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRR 384

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------- 418
           EV+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P    V           
Sbjct: 385 EVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGH 444

Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + LTE Q  AIL LRL  L  LE  +I +E +
Sbjct: 445 VQGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYE 504

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL     +  +L S ++    I  E+ E+        + G  R T    +  D +   +
Sbjct: 505 ELLEFIAGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--E 556

Query: 513 AMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL
Sbjct: 557 DLINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTIL 616

Query: 565 LLSTDGKAYTL 575
             S  GK Y L
Sbjct: 617 CFSDFGKMYWL 627


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 361/634 (56%), Gaps = 57/634 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+   +KK+
Sbjct: 6   NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  G+G   V+ +
Sbjct: 186 LGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES +  +R+ + 
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +R+EVL R
Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFIEYRKEVLTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ FR++ +  +  +  G+ IA LNID++I+IIR+                         
Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEM 422

Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                D    V+     LT  QV +IL ++L+ L  LE+ +++ +L ++++  ++   LL
Sbjct: 423 IELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELL 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            + +     +   + E+K        L   R T  + S  +  T  + +I KE + V ++
Sbjct: 483 GNKESLLKLVKNGLEEIK------AKLAVPRKTTIDYSHFE--TDVEDLIPKEDMVVTVT 534

Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572
             G+I+ +K  +                +E D +      +T   +L  S  G     K 
Sbjct: 535 MSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           Y LP G+  S    G ++  +  L+ N+ I +  
Sbjct: 595 YKLPLGDPTS---RGRSLVNIFPLSENEVITSVM 625


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 367/610 (60%), Gaps = 33/610 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGGII    E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +   +EV RG  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA   +RIV 
Sbjct: 244 KAEFQEV-RGKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++ ++F  ++++T F +N   L  GR P+ + L  ++  ++ HR EV++
Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSINNIALVKGR-PEQLNLKDLIYHFVEHRHEVVY 360

Query: 374 RRSSFRMQAIDRRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R+ IL+G +  +A  N + + I IIR  DKPK  +++ F LT+ Q +A
Sbjct: 361 RRTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKEDLIAEFDLTDIQAEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +  + 
Sbjct: 421 ILALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDA- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSA 542
               RR+T   +  A      + MI  + + + IS+ G+I+  SL  +       V   A
Sbjct: 480 ----RRST---IEYAGGEFSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKA 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              ++ D L+    +     +L  +  GK      Y +P G   S    G A+Q LI++ 
Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAVQNLINIE 589

Query: 598 HNQDIVTAFV 607
            + D + AFV
Sbjct: 590 QD-DKIKAFV 598


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + V +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  +I + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/677 (36%), Positives = 372/677 (54%), Gaps = 57/677 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + E G     +++K A  
Sbjct: 26  GISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKSYRKCATA 85

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++DGD  AAYRYTE+R+ +
Sbjct: 86  VGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLER 145

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  GIAVGMAT IP HN+ E
Sbjct: 146 TAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGE 205

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+ P++S E+L+EYI  PDFPTGG+I+  R    ++Y  GRG   +RA+  +
Sbjct: 206 VIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRI 264

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++DES    VR+V+  K 
Sbjct: 265 EEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQDESDRSGVRVVVELK- 323

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  +F  + M+  F  NM  L+ GR P+ + L   L  +L  R +V+ RR++
Sbjct: 324 RDATAEVVLNQLFRFTPMQVSFGCNMLALNGGR-PEQLTLRAFLTAFLDFREDVVARRTA 382

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           + ++    R  IL GL +A  N+DE++A IR                             
Sbjct: 383 YLLRKARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMTRRWPAHEIAPYIQLI 442

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S 
Sbjct: 443 DDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAKKIKEYLEILGSR 502

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I  E+  VKE F+       RRT   E++        + +IE+E + V ++  G
Sbjct: 503 ERIMEIITNEMIAVKEQFAVP-----RRT---EIADWAGDMDDEDLIEREDMVVTVTAGG 554

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     +S    KE D +     A+T  ++L  +T+G AY L    L
Sbjct: 555 YIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFFTTEGMAYKLKCWRL 614

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
             G     G+AI  ++ +     +      D         +++  +SKG+      S+  
Sbjct: 615 PQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFT 674

Query: 633 ANTRKGKTFLKVSSEEK 649
              R GK  +K   E++
Sbjct: 675 NVMRNGKIAMKFEGEDE 691


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 259/777 (33%), Positives = 419/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+ ++  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  + E+G+    IV+TEIPY V K+ LI+ IA+L+  KRI  + +  DES  E +R
Sbjct: 241 MRAKAEI-EIGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V +  ++  +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DNVTAY--------LRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/493 (44%), Positives = 308/493 (62%), Gaps = 42/493 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484

Query: 458 KEKIDSLLNSGKQ 470
             ++  +L S  +
Sbjct: 485 IAELLHILGSADR 497


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/597 (38%), Positives = 353/597 (59%), Gaps = 36/597 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G       KKSARIVG+V+GK
Sbjct: 18  MKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDSAAA RYTEAR+++VA  +++
Sbjct: 78  YHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARLSKVAMEMVR 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+ E+  A   
Sbjct: 138 DLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNLAEVISALHI 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG   VRA+  +E+   G 
Sbjct: 198 LMNNPEATTMDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKVDIEQTKTGK 256

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES  D   V     R     ++
Sbjct: 257 EQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRVSIDVRRDASASVI 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F  NM  ++ G+ PQ M L  IL  +L H+REV+ RR++F +Q    
Sbjct: 317 LNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKEILVAYLIHQREVIRRRTAFDLQKAQA 375

Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEII+IIR+    ++ K  ++  + L++ Q  AIL++RL  L  L
Sbjct: 376 RAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLIDGYLLSDKQAQAILDMRLVRLTGL 435

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   L+A    +  +L + +++ +QI  +  E+ EI +K  D  R      +V
Sbjct: 436 ERDKIEDEYQKLVALITDLKDIL-AHEERVDQIIYD--ELLEIQTKFGDARRTELQVGDV 492

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554
           +  +   L +       + V ++  G+I+ +              +  ++  + D +   
Sbjct: 493 TNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGINVNDEDFVDQM 548

Query: 555 LHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLLIDL 596
           +   T D +L  +  GK Y +               P  NLL   G  E IQ +I++
Sbjct: 549 IATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD-EKIQTVINV 604


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/679 (35%), Positives = 380/679 (55%), Gaps = 64/679 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM EMGL     ++KSA +V
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD ++YD+LVR+AQ +  R  LI GQGN+G+IDGD  AA RYTE R+ ++
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D++ VDF++ Y+  + EPVV P+ FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +ALIDNP I++ +++E I GPDFPTG I++  +  I  +Y  GRG   +R +   E
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILL-GKAGIQSAYSTGRGSLLMRGKVHTE 265

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +      I+VTE+PYQV K+ +IEK+AEL+  KRI  + DIRDES  +   V+    R 
Sbjct: 266 TIRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRD 325

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++  ++  + ++T F  NM  L+ G+ P+ + L  +L  ++A R +V+ RR+ + 
Sbjct: 326 ASADVILNQLYRFTPLQTSFGANMVALNGGK-PEQLTLMDMLSAFVAFREDVVNRRTKYL 384

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------- 420
           ++    R  +L GL IA  NIDE+I +IR    P   +  +++R                
Sbjct: 385 LRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDD 444

Query: 421 ----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     + L+E Q  AIL+LRL+ L  L   +I  EL+ + AE +    +L+S  +
Sbjct: 445 PRHRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTR 504

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529
               I  E+  +++ F+       RRT   E +    A L+ + +I +E + V +S+ G+
Sbjct: 505 VMQIIKDELTAIRDEFATP-----RRTELSEGA----ADLEDEDLIPREDMVVTVSHGGY 555

Query: 530 I--------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KAYTL 575
           I        RS +      S +  K + DS+     A+T   +L  S+ G     K + L
Sbjct: 556 IKRVPLSVYRSQRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRL 615

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEES 629
           P   L + +G G+A+  L+ L  N+ I +     +         ++  +++G     + S
Sbjct: 616 P---LTTPQGRGKALVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLS 672

Query: 630 EIIANTRKGKTFLKVSSEE 648
           +     R GK  +K+  E+
Sbjct: 673 DFTNVNRNGKIAMKLDDEQ 691


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/712 (34%), Positives = 402/712 (56%), Gaps = 34/712 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++ E +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN+ E+ +  +ALIDNP++  EKL + I GPDFPTGG I+     I E+Y +G+G
Sbjct: 186 TNVPPHNLGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEII-GETGIREAYTIGKG 244

Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+   RGS     I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GILLRGVATLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++  F   +  +  G+ P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQ-PRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L+ R E L RR ++ +     RV +++GLL A  N+D +I I+R        K  + S+
Sbjct: 364 FLSFREETLNRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E Q DAIL + LR L  LE+  ++ E + +  +   ++ LLN  ++    +  ++R
Sbjct: 424 LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQLLNDRRELLKALKKDLR 483

Query: 481 EVKEIFS--KSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS- 535
            +K  +S  + T +G  + +  E   SRA++  L+ +   +E I +  + RG++R  +  
Sbjct: 484 SLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEAI-LEFTQRGYVRRTQPS 542

Query: 536 --HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              S   + LH  + D +   +   T   +L+L+  GK Y +  G +    G     + L
Sbjct: 543 GRKSKAENGLH--DNDFIIQTVLTDTQKDLLILTGGGKVYPVNVGEIPPTTGRSPRGKPL 600

Query: 594 IDLNHN------QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           I +  N      + +V+ F+      T ++++++ +G    +   E    TR+G T LK+
Sbjct: 601 ITMLSNTAQGAQEAVVSRFLLPDNLETQQMILLTKQGRIKRLSLGEFTNLTRRGITILKL 660

Query: 645 SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGKGVRLQSYK 693
             ++++        G+H+ +     ++L F+   +Q+P M R   + LQ+++
Sbjct: 661 KDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGR-TAMGLQAFR 711


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/444 (44%), Positives = 305/444 (68%), Gaps = 6/444 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   QSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +++ +++D +DF+D Y+  + EPVV P++FPNLL NGTSGIAVGMAT+IP 
Sbjct: 126 AKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +  LAL +N EI I +L+EYI GPDFPTG  I+  R  I  +Y+ GRG   +R
Sbjct: 186 HQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEIL-GRSGIRRAYQTGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 245 AKTEIED-HNGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++L+ ++   + +++ F +N+  L  GR P+V+ L   L+E+L H+  V  
Sbjct: 304 IEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGR-PKVLNLKECLEEYLDHQIVVTR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I++IR     +  +  ++ RF L+ +Q  A
Sbjct: 363 RRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMERFELSYDQSQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNL 454
           IL++RL+ L  LE  +I+ E + L
Sbjct: 423 ILDMRLQRLTGLERDKIEGEYNEL 446


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/631 (38%), Positives = 355/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ +S+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M E G ++   ++KS
Sbjct: 17  DIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++DGD+ AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALI++P + I+ L+  I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 197 LGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  GR P +M L  +L  ++A R +V+ RR
Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PHLMNLRDLLTLFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + + +     R  IL GL IA  NIDE+I +IRN   P                   M++
Sbjct: 375 TKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434

Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                R  L E+        Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLALEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  VK  F+       R+T   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQTIVKDELIAVKTEFATP-----RKTMIIE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   +    G G+A+  ++ L   + I T
Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 352/619 (56%), Gaps = 65/619 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF+D Y+  + EP V PSK PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NP+ +I++L+E +  PDFPT GII      + + YR GRG   +RA+   E
Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIY-GINGVRDGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L+E Q   IL +RL+ L  LE+ +I +E   
Sbjct: 429 ADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKE 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE + +  +L   ++    I  E+  +K+ F +S  LG RR +  E S  D +T  + 
Sbjct: 489 VMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSK-LGARR-SLVEHSAYDLST--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTL-----PAGN 579
            S  G+ Y L     PAG+
Sbjct: 605 FSNRGRLYWLKVWEVPAGS 623


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 268/771 (34%), Positives = 428/771 (55%), Gaps = 55/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V   VK + +  +L+  YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 20  VAMEVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPY 79

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYT
Sbjct: 80  KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 139

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   +E +L+ +D+D VDF D Y+    EP V PS+ PNLL NG+SGIAVGMATSIP
Sbjct: 140 EARMATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIP 199

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + EI EA + +++NP+ S+  +L+ + GPDFPTGGII   ++ I+E+Y  GRG  RV
Sbjct: 200 PHRLDEIIEALIFVLENPQASLSDILDLVPGPDFPTGGII-HGKQGILEAYSSGRGRIRV 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RA+  +E +  G   I++ E+PYQ  K++L+E+I+EL   K +  + ++RDES  E +R+
Sbjct: 259 RAKTRLERI-EGRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRV 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  +  +++  ++  S ME+ F + +  +   + P++  L  +LK +L HR+ +
Sbjct: 318 VIDLK-REANAQIVLNQLYKSSGMESTFSIILLAIH-NKEPRIFNLLELLKLFLMHRKTI 375

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + ++    R+ IL+GLL+A  N + +I +I+   +    +  ++    L++ Q 
Sbjct: 376 VIRRTIYELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQAHQLSQEQS 435

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE+ +I  E   L A  +++ ++L    +  + I  E+ E+KE FS 
Sbjct: 436 KAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHADKLNHLIKEELLEIKEKFST 495

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
           +     R+T   ++    +A   + +I +E + V +S+RG+ + +        K      
Sbjct: 496 A-----RKT---QIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLKIYEQQKRGGKGK 547

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
            + +  E D ++    A+T D IL ++  G+ Y L    +  +     G+A+  LID+  
Sbjct: 548 ISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIGKALVNLIDIEP 607

Query: 599 NQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            + I         S  K LV  +K    +++ +++ A  R       +  +E   LV   
Sbjct: 608 GEKICAILSTPDFSPDKFLVFFTKKG--MIKRTQLSAFGRVRIGVRSIELKEGDALVTAQ 665

Query: 657 TGDHVAVVGENRKLLI---------FSIDQIPEMSRGK----GVRLQSYKDGGISDVICF 703
             +H     EN++L +         F    + +M R      G+RL+   D  I   I  
Sbjct: 666 ILEH-----ENQELFMATAKGMCIRFKASGVRDMGRTAMGVIGMRLKE-GDFVIGASIAL 719

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGW--LGKRGGVGSLVPKGFPRSGKFLS 752
                L  I S G      +  L+G   L  RGG+G +  K  P++G  ++
Sbjct: 720 SDQHKLLTISSKG----MGKQTLIGAYRLQNRGGLGVIGAKLTPKTGNLVA 766


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/640 (36%), Positives = 373/640 (58%), Gaps = 35/640 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARIV
Sbjct: 13  VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR++++
Sbjct: 73  GDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E 
Sbjct: 133 SMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192

Query: 200 CEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
             AA+ +IDN      E  I+++++ + GPDFPTG  I+  R+ I ++YR GRG  +VRA
Sbjct: 193 INAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E +  G   IVVTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+ 
Sbjct: 252 ITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ ++++  +F  + ++  F   M  L  G VP+++ +  +L  +L H+ +V+ R
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNIKDMLTYYLKHQEDVVTR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +   + R  IL+G LIA  NIDE+I IIRN     + K  ++ RF L+E Q  AI
Sbjct: 371 RTKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGAI 430

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RLR+L  LE  +I++E + L+A+  +   +L    +    I  E+  + + +     
Sbjct: 431 VDMRLRALTGLEREKIENEYNELIAKIAEYKEILADENKLLGVIKTELAAIADKYGDE-- 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543
              RRT+    S  D  T  + +I++E I + ++  G+I+ +   +          +  +
Sbjct: 489 ---RRTSITAYS--DDIT-DEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKGM 542

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601
           +  + D +      +T + I+  +  G+ Y +    +  SGR   G AI  L+ L   + 
Sbjct: 543 NTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPGEK 602

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            VTA +    +D   K L++++K       + E   N RK
Sbjct: 603 -VTAIIPIAGFDK--KYLMMATKNGIVKKTKIEAFENIRK 639


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + + +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  +I + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D +R
Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQ++ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + + +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  +I + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 365/619 (58%), Gaps = 40/619 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  ++ YA+S I  RAIPD+RDGFKPVHRR+++A   MG+     +KKSAR+VGEVIGK
Sbjct: 28  VENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHDKPYKKSARLVGEVIGK 87

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD + Y+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 88  YHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAMRYTEARLSKISSEMLK 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF + Y+  + EP V P+ FPN+LANG+SGIAVGMAT+IP HN+ EI +A L 
Sbjct: 148 NIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMATNIPPHNLSEIIDAVLL 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  N + S+ ++ + + GPDFPT   IV + + I   +  GRG   +R++  +       
Sbjct: 208 LTKNKDASVNEIKQVLKGPDFPTKAEIVGT-DGINSYFETGRGSITIRSKAEIIHSRDSK 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             I++ EIPY V KS LI+KI +L+  + I  + D+RDES+ E +RIV+  K  ++ P++
Sbjct: 267 SQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGIRIVIEVKKDTV-PEV 325

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           L+  +F ++ +++ F +NM  L + + P+++ +  +L+E+L H+  VL R++ F ++  +
Sbjct: 326 LLNKLFKMTPLQSNFSVNMLAL-VDKEPKLLNIKEVLQEYLKHQVNVLVRKTKFELKKAE 384

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  NID +I IIR   + D+ +  +++++ LT+ Q  AIL++RLRSL  
Sbjct: 385 EREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITKYKLTKIQAKAILDMRLRSLSN 444

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL  + A  +++  +L S  +Q + I+ E+  +K  +       R+      
Sbjct: 445 LERLKIEQELKEVKALIQELSGILKSSDKQMDIISKELINLKNTYGDE----RKTEILYG 500

Query: 502 VSRADKATLQQAMIEKE---PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           VS         A I+ E   P+  ++ +R     LK  S++   +  + G  +K  +  +
Sbjct: 501 VS---------ASIDDEDLIPVENIVISRSANNYLKRISIETYKIQRRGGVGVK-GVSTY 550

Query: 559 TTDRI------------LLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVT 604
             D +            L  +  GK Y + A  +  G    + +    L+++  N+ I+ 
Sbjct: 551 NDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSKGVPALNLMNIEKNEKILV 610

Query: 605 AFVYDSTCK--LLVVSSKG 621
               +   K  L + ++KG
Sbjct: 611 MLPVEDYSKGFLFLATTKG 629


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 402/727 (55%), Gaps = 39/727 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++YI GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+ A  ++D +I II++   P+     +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +IL ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++E+
Sbjct: 418 FTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL-------- 533
           K+ +              EV+  +   +  + +I  E I V ++N G+I+ +        
Sbjct: 478 KDKYDDP--------RMSEVNLYEDLDIDNEDLIPVEDIVVTVTNNGYIKRMNLDEYKLQ 529

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               V +S +   + D ++      T D  L  +  G+ + L    L SG    + + ++
Sbjct: 530 NRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIV 589

Query: 594 IDLNHN-----QDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVS 645
             LN           T   +D+    L  V+ +G   IV+ + I    N R+        
Sbjct: 590 NYLNFQPGEKLASFTTIKDFDAEDHYLFFVTKRG---IVKRTHINNYKNIRQNGIIAISL 646

Query: 646 SEEKMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            E+   LV K T  H  ++    N K + F    I E+ R   GVR     D    +++ 
Sbjct: 647 REDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREIGRTATGVRGMDIPDD--EEIVG 704

Query: 703 FKICEGL 709
           F + +G+
Sbjct: 705 FAVVDGI 711


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/721 (35%), Positives = 398/721 (55%), Gaps = 43/721 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++ E +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GEAGIREAYITGKG 244

Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    VEEV  GRGS     I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 SIVLRGVATVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K R  +P  +++ ++  + ++T F   +  +  G+ P+ + L  +L+
Sbjct: 305 ESDREGMRVVIELK-RDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQ-PRQLSLRQLLQ 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           E+L  R   L RR S+ +     R+  ++GLL A   +DE+I I+R        K  + S
Sbjct: 363 EFLNFRENTLNRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCS 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++
Sbjct: 423 RLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDL 482

Query: 480 REVKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVI 524
           R +K  +   + T LG +  +  E+ +  KA  Q +  + +  T             + I
Sbjct: 483 RSLKRKYGDPRRTKLGAK--SLEELPKNKKADKQNSSAKTDEDTENLSPLEPAEEAILEI 540

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---- 580
           ++RG++R ++            E D +       T   +L+L+  GK Y +  G++    
Sbjct: 541 THRGYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLILTNGGKLYPVKVGDIPPTT 600

Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT 635
             S RG      L      NQ+ V + +      +  +L++++ +G    +   E+   T
Sbjct: 601 GRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLT 660

Query: 636 RKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQSY 692
           R+G T LK+  ++++ L      G  + +     +LL FS +  Q+P M R   + LQ++
Sbjct: 661 RRGVTILKLKDDDELLLTQFSKPGQQLILASSGGRLLRFSTNDEQLPIMGR-TAMGLQAF 719

Query: 693 K 693
           +
Sbjct: 720 R 720


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 378/663 (57%), Gaps = 38/663 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG I      + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  + E G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D +R
Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+ + L  ++K ++ HR E
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+LTE Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D VTA+        L V S  +   +    ++  T+KG   KT L+  S  +   V 
Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT 657
            +T
Sbjct: 641 AIT 643


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/703 (33%), Positives = 404/703 (57%), Gaps = 42/703 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ V+L   +++ +L+YA+S I  RA+PD++DG KPV RRI+++M E+G+   A++KK+
Sbjct: 21  NIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE +
Sbjct: 81  ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +++ +D+D +DF D Y+  + EP+V P+  PNLL NG +GIAVGMAT IP+HN
Sbjct: 141 MAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +  I+N +ISI++L+++I GPDFPTGG ++   +S+  +Y  G+G   ++A+
Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKAK 259

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V +  RG   I+VTEIPYQV+K+ LIEKIA L+  K +  + D+RDES+     ++  
Sbjct: 260 SHVSK-ERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDLRDESSRKGMKIVIE 318

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  S +   F +NM  L +G+ PQ++ L  IL+ +   R EV+ R+
Sbjct: 319 LKRDANSKIILNKLYKHSQLRISFGINMVAL-VGKTPQLVSLKQILEAFFNFRIEVINRQ 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
            SF ++    R  ++  L+    +I+  I +I+     K     ++ R++  E Q  AIL
Sbjct: 378 KSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLMQRYNFDEIQSKAIL 437

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            + L+ L   E  ++ +E  NL  E  +  S+++S K++   +  E+ E+K+ +      
Sbjct: 438 EMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQKKKERILEKELLEMKKKYQDD--- 494

Query: 493 GRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
             R+TT      ++  D     + +IE++PI + I+N+G+I+S+        K     +S
Sbjct: 495 --RKTTLNFDAPLNFED-----EDLIEEKPIIITITNKGYIKSMDIDTYKQQKRGGQGVS 547

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            +   E D ++      T D  L  +  GK Y L    +  G+   +   L+  L   +D
Sbjct: 548 GMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKD 607

Query: 602 -IVTAFV----YDSTCKLLVVSSKGNAFIVEES---EIIANTRKGKTFLKVSSEEKMKLV 653
             +T+F     +D +   L  ++K    IV+++   E    +++G   +++   +++  V
Sbjct: 608 EFLTSFTSVKNFDQSQDYLFFATKKG--IVKKTPLKEYSHISKRGLIAIRLKENDEVLTV 665

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691
            K TG  ++ +   N   + F   +I  +SR      G+RL S
Sbjct: 666 NKTTGTKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGS 708


>gi|332534567|ref|ZP_08410402.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 245/636 (38%), Positives = 366/636 (57%), Gaps = 67/636 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSAR+V
Sbjct: 11  VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LALI NP+++I +L++YI GPDFPT  II   ++ I ++Y  GRG   +RAR  +E
Sbjct: 191 VNGCLALIQNPDLTILELMDYIPGPDFPTAAII-NGKKGIEQAYLTGRGKVYMRARADIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D +RIV+  K 
Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  ++++ +++  + ++T F +NM  L +   P+   L  +L+E++ HRREV+ RR+ 
Sbjct: 310 GDVG-EVILNNLYSQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F ++    R   L+GL IA  NID II +IR    P    ++                  
Sbjct: 368 FDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLEKA 427

Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ ++E Q  AIL+LRL  L  LE  +I +E   LL    
Sbjct: 428 GEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLELIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L + ++    I  E+ E+KE +        RRT   E++ A      + +I +E 
Sbjct: 488 ELLYILATPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISLEDLITEEN 539

Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++  +L  +          SA   K+ D ++  L A+T D IL  ST G 
Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
               K Y LP   L S    G+ I  L+ L  ++ I
Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++V +AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q
Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
            S     RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +      + D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 340/572 (59%), Gaps = 20/572 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSA
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN+
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+ 
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V    
Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+
Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  +ID II IIR    P   K  +++ + L++ Q  AIL+
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F      G
Sbjct: 426 MRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKF------G 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
             R T   V     +   + +IE+E + V +++ G+I+ L +            +  +  
Sbjct: 480 DERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMGV 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            + D ++  L   T D +L  +  GK Y + A
Sbjct: 539 HDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/523 (42%), Positives = 319/523 (60%), Gaps = 47/523 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 7   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 67  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 127 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 187 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 245

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 246 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 306 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L +A  NID II +IR+   P   K  +V+            
Sbjct: 364 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 424 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             ++  +L S  +    I  E+  V+E F       +RRT   
Sbjct: 484 IAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEIT 521


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 375/634 (59%), Gaps = 43/634 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI 
Sbjct: 9   VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 69  GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   +R+R  +E
Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
               G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+ + VR V+  + R
Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFVIEVR-R 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V+ RR+ F
Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
                + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q  AIL++R
Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++       R
Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANP-----R 480

Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
           RT     EV     +   + +IE+E + + +SN G+I        RS K     +     
Sbjct: 481 RTELMIGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590
            + D ++  +   T D +L  +  G+ Y                LP  NLL     GE I
Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           Q +I+    +DI+  + + +T + +V  ++ + F
Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 369/631 (58%), Gaps = 37/631 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V L   + + ++ YA+S I +RA+PD+RDG KPVHRRI+ +M   G      ++K 
Sbjct: 25  NIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRKC 84

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG V+G  HPHGD +VYDS+VRLAQ F  R+ ++ G GNFG+ DGD  AAYRYTEAR
Sbjct: 85  ATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEAR 144

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A  +++ ++++ VDF+  ++E++ EP+V PS+FPNLL NG++GIAVGMAT IP HN
Sbjct: 145 LTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPHN 204

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +  I+NP+  +E ++E + GPDFPTGG I+     I E+YR G+G   VR+ 
Sbjct: 205 LGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTIL-GLSGIRETYRTGKGRITVRSA 263

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVL 313
             +E++      IVV ++PY V K+RLIEK+A+L+  KRI  +  IRDES   E++RIV+
Sbjct: 264 ASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVI 323

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWLAHRR 369
             K R  +P +++  ++ ++ ++  F  NM  L   + GR  P+V+ L   L  ++AH++
Sbjct: 324 ELK-RDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQK 382

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RR+ F +     R  I++GLL A  NIDE+I IIR   NE+  K  +  RF  +  
Sbjct: 383 SVVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCERFDFSIR 442

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+++RL  L  LE  +++ ELD L+ + E  + ++N      NQ+ C+     E+ 
Sbjct: 443 QAQHIVDMRLGRLTALERERLQKELDELIVKIEYFNRIINES-SLLNQVICD-----ELT 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
              T    +R T  E    D+   ++ + E+E + + +++ G++   K   VD       
Sbjct: 497 DLKTRYANKRRTVIEPYSLDEFEDEELVKEEE-VVITLTHFGYV---KRQPVDTYQQQHR 552

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +S L  +E D ++  +   T D +L  +  G+ + L    +  +GR   G+AI  L
Sbjct: 553 GGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPEAGRQAKGQAIVNL 612

Query: 594 IDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
           + L   +    ++T   ++    LL+ +++G
Sbjct: 613 LQLVEGEKVRTVITVHEFNREDYLLMATARG 643


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/621 (37%), Positives = 364/621 (58%), Gaps = 56/621 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G      
Sbjct: 4   LNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKP 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGD AAA RY
Sbjct: 64  HKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T+I
Sbjct: 124 TEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG   
Sbjct: 184 PTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGTVT 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  +   
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R     +++ +++  + ++T F  NM  +  G  P+ M L  IL  +LAH+REV
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHG-APKTMSLKEILVAYLAHQREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ F +Q    R  IL+GL IA  +IDEII IIR+    ++ K  +++ ++L++ Q 
Sbjct: 362 IRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDKQA 421

Query: 429 DAILNLRLRSLRKL------EEYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            AIL++RL  L  L      EEYQ    + ++L ++LA +E++D ++      +N     
Sbjct: 422 QAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEII------YN----- 470

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                E+    T  G +R T  +V     +   + +IE+E + V ++N G+I+ + +   
Sbjct: 471 -----ELLEIQTKFGDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEF 524

Query: 539 D--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--------------- 575
                    +  ++  + D +   +   T D +L  +  GK Y +               
Sbjct: 525 KAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGI 584

Query: 576 PAGNLLSGRGHGEAIQLLIDL 596
           P  NLL+  G+ E IQ +I++
Sbjct: 585 PVVNLLNFEGN-EKIQTVINV 604


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 375/634 (59%), Gaps = 43/634 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI 
Sbjct: 9   VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 69  GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   +R+R  +E
Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
               G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+ + VR V+  + R
Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFVIEVR-R 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V+ RR+ F
Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
                + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q  AIL++R
Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++       R
Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANP-----R 480

Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
           RT     EV     +   + +IE+E + + +SN G+I        RS K     +     
Sbjct: 481 RTELMIGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590
            + D ++  +   T D +L  +  G+ Y                LP  NLL     GE I
Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           Q +I+    +DI+  + + +T + +V  ++ + F
Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 352/619 (56%), Gaps = 62/619 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE SI++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T  E S  D +T  +
Sbjct: 488 DVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        RS K       A   KE D +     A+T D +L
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603

Query: 565 LLSTDGKAYTLPAGNLLSG 583
             S  G+ Y L    + SG
Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 355/616 (57%), Gaps = 56/616 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G       KKSA
Sbjct: 9   IRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+
Sbjct: 129 SKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NP  +   L+E + GPDFPTGGI++  +  I  +Y  GRG   VRA+ 
Sbjct: 189 GEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES  D   +    
Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRISIDV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ +++  + ++T F  NM  ++ G+ PQ M L  IL+ +L H+REV+ RR+
Sbjct: 308 RRDASASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKAILEAYLTHQREVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
           +F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  ++L++ Q  AIL+
Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLIDGYALSDKQAQAILD 426

Query: 434 LRLRSLRKLE------EYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +RL  L  LE      EYQ    + ++L ++LA +E++D L+                  
Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVELIADLKDILAHQERVDQLI----------------YD 470

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           E+    T  G  R T  +V         + +IE+E + + ++  G+I+ +          
Sbjct: 471 ELLEIQTKFGDERRTELQVGDV-TTLEDEDLIEEEDVIITLTRNGYIKRVPQAEFKAQNR 529

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNL 580
               +  ++  + D +   +   T D +L  +  GK Y +               P  NL
Sbjct: 530 GGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNL 589

Query: 581 LSGRGHGEAIQLLIDL 596
           L   G  E IQ +I++
Sbjct: 590 LHFEGD-EKIQTVINV 604


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 340/572 (59%), Gaps = 20/572 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSA
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN+
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+ 
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V    
Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+
Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  +ID II IIR    P   K  +++ + L++ Q  AIL+
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F      G
Sbjct: 426 MRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKF------G 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
             R T   V     +   + +IE+E + V +++ G+I+ L +            +  +  
Sbjct: 480 DERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMGV 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            + D ++  L   T D +L  +  GK Y + A
Sbjct: 539 HDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 404/734 (55%), Gaps = 74/734 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KKS
Sbjct: 7   DVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI++ +I+I++L+E+I GPDFPT GII   R+ I+++Y  GRG  +VRA+
Sbjct: 187 LGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGII-NGRKGIIDAYHTGRGKIKVRAK 245

Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   + G   IVV E+PYQV K+RLIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 246 ADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMVV 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + M+  F +N   L  G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 EVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQ-PKLFNLKEMLEAFILHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL I+  NI+ IIA+IR+   P    ++               
Sbjct: 365 RTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAML 424

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ +TE Q  AIL+LRL+ L  LE  +I +E   LL  
Sbjct: 425 EASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLEI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L + ++    I  E+ E+K  F+       RRT   E++ ++     + +I +
Sbjct: 485 IAALLFILENPERLMEVIREELEEIKANFADP-----RRT---EITASETDLSIEDLITE 536

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        S +      +A   K+ D ++  L A T D IL  ST 
Sbjct: 537 EDVVVTLSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTR 596

Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIV 626
           G+ Y L      L S +  G  I  ++ L   + I     V D      V  +  N   V
Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYADDKFVFMATANG-TV 655

Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +++ + A +R +    + ++  E  +L+       V +   + +++IFS         GK
Sbjct: 656 KKTALSAYSRPRNSGLIAINLNEDNELI------GVGITDGSNEIMIFS-------DAGK 702

Query: 686 GVRLQSYKDGGISD 699
            VR +  ++  + D
Sbjct: 703 VVRFKEAEESAVLD 716


>gi|333030660|ref|ZP_08458721.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
 gi|332741257|gb|EGJ71739.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
          Length = 859

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 362/611 (59%), Gaps = 28/611 (4%)

Query: 12  LVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +VE++ +  +++   ++  Y+ Y++S I  RA+PD++DGFKPVHRRI++ M E+G     
Sbjct: 1   MVEQDRIIKINIEDEMKSSYIDYSMSVIVSRALPDVKDGFKPVHRRILYGMMELGNTSDK 60

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA R
Sbjct: 61  PYKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 121 YTEARLNKMGEEMMQDLYKETVDFDPNFDNTLQEPKVLPARIPNLLVNGASGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ E+ +A  A ++N EI +E L++Y+  PDFPTGG I      + E++  GRG  
Sbjct: 181 MPPHNLSEVIDACQAYLENTEIDVEGLMQYVKAPDFPTGGFIY-GMSGVKEAFETGRGRV 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
            +RAR  + E G+    IV++EIPY V K+ LI+ IA+L+  KRI  + ++ DES    +
Sbjct: 240 VMRARAEI-EAGQTHEKIVISEIPYNVNKADLIKHIADLVNEKRIEGIANVNDESDRSGM 298

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++  ++ ++ +++ F +N   L  GR P  + L  ++  ++ HR 
Sbjct: 299 RIVVDCK-RDANANVVLNKLYKMTALQSSFGVNNVALVDGR-PHTLNLRDLVANFVEHRH 356

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ RR+ F ++  + R  IL+GL+IA  NIDE+I IIR    P      +++RF L+E 
Sbjct: 357 DVVIRRTQFDLRKAEERAHILEGLIIASDNIDEVIKIIRAAKNPNEAITNLMTRFELSEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+ +RLR L  L + Q+  E   ++A   +   +LN+ ++    I  E++EVK+ +
Sbjct: 417 QARAIVEMRLRQLTGLMQDQLHGEYQEVMARIAEYKEILNNDEKCREVIKAELQEVKDKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSV 538
                   RR+   E+  + +    +     +P+ + IS+ G+I+        S     V
Sbjct: 477 GDE-----RRS---EIVYSSEEFNPEDFYSNDPMIITISHMGYIKRTPLSDFTSQNRGGV 528

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L+++
Sbjct: 529 GSKGTDTRDQDFIEHIYPATMHNTMMFFTQMGKCYWLKVYEIPEGSKNSKGRAIQNLLNI 588

Query: 597 NHNQDIVTAFV 607
           + N D V A++
Sbjct: 589 DRN-DAVNAYL 598


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/647 (36%), Positives = 373/647 (57%), Gaps = 38/647 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID     N E SIE +L+ + GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L +   P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILEMLNYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN    +     ++  F LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I       +EI 
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIK------EEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +T  + +I ++ + + ++  G+I+ + + +         
Sbjct: 479 VISGKYGDDRRTSIGFDELDLST--EDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      T + I+  +  G+ Y +    +  +GR   G AI  L+ L
Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637
             ++ I TA +    Y+    L + + KG   +V+++ I   AN RK
Sbjct: 597 MPDEKI-TAMIPIREYEDGKYLFMATKKG---LVKKTPITDYANVRK 639


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/667 (35%), Positives = 376/667 (56%), Gaps = 42/667 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N    E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++     R+V+  K  ++   +++ +++  + ++  FP NM  L  G VP+ + LDG ++
Sbjct: 313 TSGRTGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++ 
Sbjct: 371 HWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+
Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+ E +        RRT        D     + +I +E + V I+  G+ +  ++ S  
Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585
                   +     +E D +       TT R LL  T+       K Y LP G   S   
Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+     ++I        YD    L++ + +G       SE  +N   G   +
Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658

Query: 643 KVSSEEK 649
            +  +E+
Sbjct: 659 NLRQDEE 665


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 375/665 (56%), Gaps = 37/665 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  + +  +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GVGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILNLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR   D P  K  +++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K  F+       RRT    ++ A+    ++ +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTSFATP-----RRTV---ITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                 +A   K+ D+++  L     D +L  S  G     KAY +P G+  S    G  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTS---RGTP 588

Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           I  L+ +   + I +    D  ++ + LV+ +KG      E    +N R     + +S E
Sbjct: 589 IVQLLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIR-ANGLIAISLE 647

Query: 648 EKMKL 652
           E  +L
Sbjct: 648 EGDQL 652


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKA 568


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/680 (34%), Positives = 395/680 (58%), Gaps = 45/680 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ + + VSL   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      
Sbjct: 8   IDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDKPH 67

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 68  KKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYT 127

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  +L+ +++D +DF+D Y++E+ EPVV P++FPNLL NG SGIAVGMAT+IP
Sbjct: 128 EARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATNIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+ NP++++++L+E + GPDFPTG +++  +  I  +Y+ GRG   V
Sbjct: 188 PHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVM-GKSGIRRAYQTGRGKILV 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           R++  +E++      IVVTEIPY V K+ L+++IA+L   KRI  +    DES  E +RI
Sbjct: 247 RSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMRI 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R     +++ +++  + M+  F  NM  +  G VP+++ L  IL ++L H+ EV
Sbjct: 307 VIEVR-RDTSASVVLNNLYKYTPMQVSFGFNMLAIDKG-VPKILNLKEILSKYLDHQVEV 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ +  +  + R  IL+GL IA  +IDEII IIR+    D  K  +++R+ L++ Q 
Sbjct: 365 IRRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYELSDVQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL  L  LE  +I+ E  +LL   +++  +L S ++ +  I  E+ E++  F  
Sbjct: 425 QAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERIFQIIEDELNEIRTRFG- 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541
             D  R      E++  +     +++IE+E + + ++N+G+I+ +      +        
Sbjct: 484 --DARRTELHIGEITDIE----DESLIEEEDVLIALTNKGYIKRMTQDEFSVQNRGGRGV 537

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585
             +   +GD ++  +   T D +L  +  GK Y                LP  NL+    
Sbjct: 538 KGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGLPIINLIK-ID 596

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            GE ++ +I ++ +QD       D    L  V+  G       SE       G   L + 
Sbjct: 597 KGEEVKAMISIS-DQDT------DHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLK 649

Query: 646 SEEKMKLVVKVTGDHVAVVG 665
            ++ +  V++  G+   ++G
Sbjct: 650 EDDSLVAVMETDGNKPIIIG 669


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 354/604 (58%), Gaps = 30/604 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + + ++   ++  Y+ Y++S I  RA+PD RDG KPV RR+++AM   GL    AF K
Sbjct: 6   EKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A +VGEV+   HPHGD SVYD+LVR+AQP+V RYPLI  QGNFG++DGD AAAYRYTE 
Sbjct: 66  CAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +AE +L+ ++ED VDF   Y E  +EP V P+  PNLL NG++GIAVGM T+IP H
Sbjct: 126 RLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A  A+IDNP IS+++L   + GPDFPTGG+I   RE I+   + G+G  R R 
Sbjct: 186 NLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIA-GREGILSYLKTGKGIVRTRG 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+  G   IVVTEIPY V ++ L+ +IAEL+  K+I  + D+RDES E+ RIV+ 
Sbjct: 245 KAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENTRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R     +++  +F  + +E+ F + +  L   R P+ M +  +++ ++ HRREV+ R
Sbjct: 305 LK-RGEQSKVVINQLFQKTALESSFGVTLLALDKKR-PKQMNIKELIECYIEHRREVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+G +IA  N+D+ + IIR   N ++ K  +++++ L+E Q DAI
Sbjct: 363 RTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPLSERQTDAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  LE  +I++E   L+   E++  +L S  +    I  E+ E+KE ++    
Sbjct: 423 LELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMKEKYTSP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RRT   E+  A      + +I  E   + +S+ G+I        RS +     +   
Sbjct: 481 ---RRT---EIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVIGA 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              E D +     A T D IL  ++ G     K Y +P G   S    G+++   + L  
Sbjct: 535 ETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRAS---KGKSVSSFLRLAE 591

Query: 599 NQDI 602
            + I
Sbjct: 592 GEKI 595


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/611 (38%), Positives = 350/611 (57%), Gaps = 62/611 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +SEP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SI++L++ I  PDFPT GII    + + + YR GRG   +RAR   E
Sbjct: 191 VDACLHLLKNPEASIDELMDIIPAPDFPTAGIIY-GIQGVKDGYRTGRGRVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLNHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ I IIR    P PV                 M++R 
Sbjct: 369 NLRKARERGHVLEGLAVALANIDDFIRIIRESPTP-PVAKTELMNRPWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +++AE E +  +L    +    I  E+  VK+ F + T +G RR +  E S  D +T  +
Sbjct: 488 DVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQ-TKIGARR-SLVEHSSFDLST--E 543

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I+S   H             A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDYIL 603

Query: 565 LLSTDGKAYTL 575
             S  G+ Y L
Sbjct: 604 CFSNRGRLYWL 614


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/629 (37%), Positives = 366/629 (58%), Gaps = 34/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R SI E+YR GR  
Sbjct: 187 NLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRSIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L +   P+V+ L  +L E+L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-IDNQPKVLNLHQMLDEYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR   N    K  ++ RF L++ 
Sbjct: 365 EVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   LLA+ E++ ++L   K+    I  EI+ + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILADVKKLLTVIKEEIQIIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT    +   D  +++  +I  E   + +++ G+I        RS      
Sbjct: 485 GDD-----RRTA---IGYDDDVSMED-LIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +  +GR   G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAGRTARGTAIINLLQL 595

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKG 621
             ++ I TA +    Y+    L + +  G
Sbjct: 596 QPDEKI-TAIIPMREYNEDKYLFMATRNG 623


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/615 (37%), Positives = 360/615 (58%), Gaps = 63/615 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  +F   +KKSARIV
Sbjct: 11  VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+ P HN+ E+
Sbjct: 131 SHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNFPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LAL+  PE SI++L+E+I GPDFPT GII      + + YR GRG   +R +  VE
Sbjct: 191 INGLLALLQKPETSIDELMEFIPGPDFPTSGII-HGISGVRDGYRTGRGRVVMRGKTHVE 249

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317
            + RG+   I+V E+PYQV K   IEKIAEL+  K+I  + D+RDES +  +R+V+  K 
Sbjct: 250 SLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMRVVIELKK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             + P++++ +++  + ++  F +NM  L  G+ P+++ L  IL  +L HRREV+ RR+ 
Sbjct: 310 GEI-PEVILNNLYKQTQLQDNFGMNMVALIDGQ-PRLLNLREILDAFLKHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413
           + ++    R  IL+GL +A  N+DE+I II++   P                        
Sbjct: 368 YELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSSMLKKS 427

Query: 414 -----KPVMVS--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                KP  +S         + L++ Q   IL LRL+ L  LE+ +I +E   ++     
Sbjct: 428 SQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIMVTIID 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LN  ++  + I+ E+ E++  +        RR+    V+ A   +++  +I  + +
Sbjct: 488 LLDILNKSERVTSIISEELTEIRSQYGDD-----RRSEI--VTDAYDLSIED-LIAPQDM 539

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570
            V +SN G+I        R+ K       A+  KE D ++    A++ D IL  S+ G  
Sbjct: 540 VVTLSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQV 599

Query: 571 ---KAYTLPAGNLLS 582
              K Y +P G+ +S
Sbjct: 600 YWLKVYEVPQGSRIS 614


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 370/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++ + + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/690 (35%), Positives = 407/690 (58%), Gaps = 41/690 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ +++YA+S I +RA+PD+RDG KPV RRI+H M+E+G      +KKSARIVGEV+GK
Sbjct: 15  MKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPYKKSARIVGEVMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++LVR+AQ F  RY ++ G GNFG+IDGD AAA RYTEARM++++  +++
Sbjct: 75  YHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYTEARMSKISMELVR 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F   Y+ E++EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 135 DINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIPPHNLGEVIDAILA 194

Query: 206 LIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +  NP+I+I +L+E YI GPDFPTG  I+  + +I ++Y  G G   +RA+  + ++  G
Sbjct: 195 VSHNPDITIMELMEDYIQGPDFPTGAYIL-GKSAIKKAYETGNGLIIMRAKTDIIDIHGG 253

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
              I+V EIPY V K+RLIEK+AE +  KRI  + +IRDES  E +RIV+  + + + P+
Sbjct: 254 KKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRIVIELR-KDVQPE 312

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  +F L+ ++T F +N   L +   PQ + L  ++  +L H+ EV+ RR+++ ++  
Sbjct: 313 VILNQLFKLTSLQTTFGVNTIAL-VNNEPQTLNLKQMITYYLDHQEEVIKRRTAYDLKKA 371

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+GL  A   ID II +IR     + +   ++S F ++E Q  AI  ++L+ L 
Sbjct: 372 EDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSEFDMSERQAKAIREMQLQRLA 431

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I++EL++LL     +  +L + ++    I  E+ ++K+ F+      +RRT   
Sbjct: 432 GLEREKIENELNDLLTLIADLKDILENRERILAIIEAELLQLKDKFAD-----KRRT--- 483

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLK 552
           E+ +       + +I  E I + ++  G+++ +   +          +  +   E D + 
Sbjct: 484 EIIQGTFDLEDEDLIPVEDIIISLTTNGYVKRMPVDTYKTQNRGGRGIKGMATNEDDIVD 543

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTA----- 605
             ++  T D +L  +  GK Y +   N+   GR   G  +  L++L+ ++ + +      
Sbjct: 544 SLINMSTHDDLLFFTNFGKVYRIKGYNVPEFGRTAKGLPVVNLLNLDKDEYVKSMISIRK 603

Query: 606 --FVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD- 659
              +      L  V+  G   +V+++ I    N R+ GK  + +  ++++  V   TG+ 
Sbjct: 604 EDILEKKAEYLFFVTLNG---LVKKTHIDEFENIRQSGKIAIGLKEDDQLVSVKLTTGNA 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            + V   N KL+ F    + +M R   GVR
Sbjct: 661 QILVAASNGKLIRFKESDVRKMGRTASGVR 690


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/605 (38%), Positives = 346/605 (57%), Gaps = 55/605 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI +P +SIE+L++YI GPDFPT  II   R+ I+++Y+ GRG   +RA 
Sbjct: 187 LTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++  
Sbjct: 246 AEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+ L +A  NID IIA+I+    P    V                 
Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLE 424

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL LRL  L  LE  +I +E + LL   
Sbjct: 425 KAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+ E+        + G  R T    +  D +   + +I +E
Sbjct: 485 AGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--EDLINEE 536

Query: 519 PITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ +   L  +           A   K+ D ++  L A+T D IL  S  G
Sbjct: 537 DVVVTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFG 596

Query: 571 KAYTL 575
           K Y L
Sbjct: 597 KMYWL 601


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 258/739 (34%), Positives = 414/739 (56%), Gaps = 60/739 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +E+ Y+ YA+S I  RA+P + DG KPVHRRI++AM EMG+  G++ +KS+
Sbjct: 16  VENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAMHEMGVSSGSSHRKSS 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 76  SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAQRYTEARM 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + ++E +L  +D+D VDF   Y++   EP V P+ FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 136 SSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LID+P+ ++E L++++ GPDFPTG  IV  R++I  +Y+ GRG  RVRA +
Sbjct: 196 GEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAEF 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VEE   G   IVVTE+P+Q  K+RL+E+IAE +    I  + D+RDES  D VRIV+  
Sbjct: 255 EVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLRDESDRDGVRIVIEL 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQVMPLDGILKEWLAHRREVL 372
           K R  + +++   +     +E        V+++  V   P+V+ L   L+E++AHRREV+
Sbjct: 315 K-RGANTEVVKNRL-----LENHLERTFGVINLALVDGQPRVLSLKETLEEYVAHRREVV 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RRS + ++  + R  IL+G L A  N D+++ +IRN +     K  +   +  +++Q D
Sbjct: 369 RRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENLQDAYDFSQDQAD 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            I+ ++L SL  +E  +I+ E + + AE E+++++L S ++  + I  E+R +KE +   
Sbjct: 429 HIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILESEEELLSVIKDELRGIKEEYGDE 488

Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                RRT+  E    D+ T+  + +I +E + VV++   +++ +     D        +
Sbjct: 489 -----RRTSIIE----DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPIDQFDPQGRGGKGI 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
                KEGD +     A+T D +L  +  GK Y L    +  +     G++   ++DL+ 
Sbjct: 540 IGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDP 599

Query: 599 NQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSS 646
            +DI             FV  +T    V  + G  F  I     I A+  +G   + V  
Sbjct: 600 GEDITAIVDTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGIIAADLEEGDELVDVEV 659

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVIC 702
            +  + +V  T        E    + F  D++  M R      G++LQ   D  ++ ++ 
Sbjct: 660 TDGSQDLVIAT--------EGGMTIRFDEDEVRAMGRNARGVNGIKLQD--DDAVAGLVA 709

Query: 703 FKICEGLTWIDSAGRSYNR 721
               +G   +      Y +
Sbjct: 710 TDEADGQALLTVTRNGYGK 728


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/566 (39%), Positives = 339/566 (59%), Gaps = 25/566 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           EE Y+AYA+S I  RA+PD RDG KPVHRRI++AM E+GL     FKK AR+VGEV+GK 
Sbjct: 40  EESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLSSKKPFKKCARVVGEVLGKF 99

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQ 145
           HPHGD +VYD+LVR+AQ F  R PL++G GNFG++DGD AAA RYTE R+  ++E ++L 
Sbjct: 100 HPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAAAMRYTECRLQGLSEAMLLA 159

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF  T++   +EP V P++ PN+L NG SGIAVGMAT+IP HN+ E+ +A +A
Sbjct: 160 DLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVGMATNIPPHNLAEVVDALIA 219

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP  ++E+L+E++ GPDFPTGG I+ + + I+++YR G G   VR +  +E++ R S
Sbjct: 220 LLHNPNATVEELMEHLPGPDFPTGGQILGT-DGILDAYRFGHGRLTVRGKASIEQLDRRS 278

Query: 266 --WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDP 322
               ++++E+PYQ  K+ L+EKIA+L+  K +  + DIRDES    +RIV+  K R   P
Sbjct: 279 NRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDESDRFGMRIVIEVK-RGAMP 337

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
            +++ +++  + ++TRF  NM V  +G  P+VM L   L+ ++  R  V+ RR+ F+++ 
Sbjct: 338 KVVLNNLYKYTTLQTRFSCNM-VGIIGGEPKVMGLKDFLETFVEFRCSVIERRAKFQLKR 396

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSL 439
            + R  I++G+LI   N+D ++ IIR+          +   F++T  Q DA+L + LR L
Sbjct: 397 AEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQKGFNVTPAQADALLAMPLRRL 456

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  ++K E D L AE   +  LL S K +  QI       KE      + G  R T 
Sbjct: 457 TSLESGKLKEEHDALTAEITDLKQLLES-KHRVLQII-----EKEALVLKKEYGTPRRTL 510

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSL 551
            E  R D       +I  E   V +S +G+I+ + + +           S    +  D++
Sbjct: 511 VEQGR-DGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDAM 569

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA 577
                  T D +L  S  G  Y++ A
Sbjct: 570 SDFFVCRTHDYVLFFSERGIVYSIRA 595


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/704 (34%), Positives = 408/704 (57%), Gaps = 53/704 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + KSARIVG+V+GK
Sbjct: 17  MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNRKYLKSARIVGDVLGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQ +  RYP + GQGNFG++DGD  AA RYTEAR+ ++++ +L 
Sbjct: 77  YHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEVLS 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  HN+ E  +A  A
Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN EI+I++L+++II PDFPTGGII    + + +++  GRG   +RA+   +E+G  +
Sbjct: 197 YIDNKEITIDELMQHIIAPDFPTGGIIY-GYDGVRDAFHTGRGRVVLRAKVNFDEIGNRN 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES  + +RIV   KN ++ P++
Sbjct: 256 -AIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLRIVYELKNDAI-PNV 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + ++T F +N   L  GR P+ + L  I+  ++ HR EV+ RR+ F ++   
Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVHGR-PEQLNLKDIIHHFVEHRHEVIVRRTQFELKKAK 372

Query: 385 RRVEILKGLLIAYLN---IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438
            R  IL+G +        +D  I+IIR+   P+     ++  F L++ Q  AIL+LRL  
Sbjct: 373 ERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIEAFELSDIQAQAILDLRLAR 432

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  +E  +I+ E D ++ E   ++ +L +  +++  I  E+ E+KE +      G  R T
Sbjct: 433 LTGMELDKIRDEYDAIMKEIANLEDILANEPRRFQIIKEELLEIKEKY------GDERRT 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDS 550
             + S  + +   + +I  E + + IS+ G+I+  SL  + +         A   ++ D 
Sbjct: 487 EIDYSGGEMSI--EDIIPNESVVLTISHAGYIKRTSLSEYKIQSRGGVGNKAATTRDSDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           L+  + A     +L  +  G+ Y L     P G   S    G A+Q LI++  + D + A
Sbjct: 545 LEYIVSATNHQYMLFFTEKGRCYWLRVFEIPEG---SKTAKGRAVQNLINIEPD-DKIKA 600

Query: 606 FV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLV 653
           ++         Y +   +++V+  G    ++++ + A +R    G   +++   +++   
Sbjct: 601 YIRTNNLKDSEYVNQMSVVMVTKNGT---IKKTSLEAYSRPRVNGVNAIEIRDNDQLLGA 657

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
               G+  + +  +N K + F  +++ E+ RG  GVR    +DG
Sbjct: 658 YLTNGNSQIMIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDG 701


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 344/603 (57%), Gaps = 49/603 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++ +   ++  +L YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR 
Sbjct: 25  SIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM  
Sbjct: 85  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDA 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L+ +D+D VDF+D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+ P++S E+L+EY+  PDFPTGGII+  R    ++Y  GRG   +RA+   
Sbjct: 205 VIDACQALIEKPDLSSEELIEYVPAPDFPTGGIIL-GRSGAQKAYIEGRGSVIIRAKTRT 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317
           EE+ +  + IV+ EIPYQV K+ +IE+IAEL+  K+I  +  + DES    VR+V+  K 
Sbjct: 264 EEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGVADESDRIGVRVVVELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++  +F  + M+T F  NM  L+ G+ P+ + L G L  +L  R EV+ RR++
Sbjct: 323 RDATPEVVLNQLFRFTQMQTSFGCNMLALNGGK-PEQLTLRGFLTSFLDFREEVVARRTA 381

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F ++    R  +L GL +A  N+DE++A IR                             
Sbjct: 382 FELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALMTRAWPAEEILPFIKLI 441

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P  V      ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + +   ++L S 
Sbjct: 442 DDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKDYLAILASR 501

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+ EV+  F+       RRT   E S        + +IE+  + V I+  G
Sbjct: 502 ERILEIISNELAEVRAKFAVD-----RRTEIVEWS---GDMDDEDLIERSDMVVTITQGG 553

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        R+ K     ++    K+ D +     A+T   +L  +T G  Y L    L
Sbjct: 554 YIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFTTGGMVYKLKTWRL 613

Query: 581 LSG 583
            SG
Sbjct: 614 PSG 616


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/700 (36%), Positives = 396/700 (56%), Gaps = 45/700 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +  L +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           Q ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GR 263
           ALI NPEI+  +L++YI GPDFPTG  ++ +   I E+Y  GRG   +R    +E V  R
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGT-SGIREAYTTGRGSITMRGVATIETVQQR 239

Query: 264 GSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319
           G      I++TE+PYQ  K+ LIEKIA+++  KR+  + DIRDES  D +RIV+  K  S
Sbjct: 240 GRQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDS 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P +++ +++  + ++  F  NM  L  G+ P+++ L   L+ +L  R E + RR+ + 
Sbjct: 300 Y-PRVVLNNLYKQTPLQANFGANMLALVNGK-PEILNLKKFLEVFLDFRIESITRRTRYE 357

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  +L+GLLIA   +DEII +IR+  D P  K  +++ + L+E Q DAIL ++L
Sbjct: 358 LRKAEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITNYGLSEVQADAILQMQL 417

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++KE FS       RR
Sbjct: 418 RRLTALEADKIRQEHEDLQTQIADLQDILARRERILEIIETEIAQLKESFSTP-----RR 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEG 548
           T        +    ++ +I  E   ++++ +G+I+ +  ++ +         +A   K+ 
Sbjct: 473 TVILP---GEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 529

Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           D+++  L     D IL  S  G     KAY +P  +  S    G AI  ++ +   + I 
Sbjct: 530 DTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTS---RGTAIVQMLPIPREEKIT 586

Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGD 659
           +    D  S  + LV+ +KG      E    +N R     + +S EE  +++ V +   +
Sbjct: 587 SIVPVDEFSREEYLVMLTKGGNIKKTELASFSNIR-ANGLIAISLEEGDQLRWVRRARVE 645

Query: 660 HVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
              +VG    + I    + +Q+  +SR  +GVR    K G
Sbjct: 646 DSILVGSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKG 685


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/706 (35%), Positives = 404/706 (57%), Gaps = 50/706 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +K V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 22  DRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 81

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQP+  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 82  CARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSVDGDGAAAMRYTEA 141

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+++  ++  +++D VDF   ++E + EP + PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 142 RLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTTGIAVGMATNIPPH 201

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E  IE++L+ I  PDFPTGGII+ +R +  E+YR GRG 
Sbjct: 202 NLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTRGA-EEAYRTGRGK 260

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
             VRA   +E +  G   IVVTE+PY V K+ +I KIAEL+  K++  +  +RDES  E 
Sbjct: 261 VIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDGITALRDESDREG 320

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  +N  ++P++++  ++  + M+  F + M  L +   P+V+ +  +LK ++ H+
Sbjct: 321 MRVVIELRN-DVNPNIMLNKLYKHTQMQDSFGIIMLAL-VNNEPKVLSITEMLKHYIKHQ 378

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +     K  ++ RF LT+
Sbjct: 379 EEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKEQLMGRFGLTD 438

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  +++ E  +LL + E++ ++L   K     I  EI E+   
Sbjct: 439 VQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAILADRKVLLGVIRTEISEIANK 498

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           +      G  R +  ++ + D     + +I      + +++ G+I+ +   S+D      
Sbjct: 499 Y------GDDRKS--QIGQDDSDIDTEDLIPNVNTVIAMTSLGYIKRM---SIDNFKAQN 547

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
                +  +   + D ++  L   T + ++  +  G+ Y L A  +   S    G AI  
Sbjct: 548 RGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKAYQIPEASRTSRGMAIVN 607

Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKV 644
           L+ L   + I     V  F  +  C L +V+ KG    V+++ I   +N RK G   + +
Sbjct: 608 LLQLAPGEKISAMIPVKGFEDEEKC-LFMVTKKGT---VKKTPITDFSNVRKTGLAAITL 663

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             ++++  V  VT D  V +V +N   + F    +   SR   GVR
Sbjct: 664 RDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITSRSSIGVR 709


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 367/621 (59%), Gaps = 50/621 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E GL      +K A+IVG+V+G  HPH
Sbjct: 25  YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++AE +++ + +
Sbjct: 85  GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A  A IDN
Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI I++L +Y+ GPDFPTGG+I   R+ I ++++ GRG   VR ++ +E   +G   IV
Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327
            TE+PYQV  + L+ +I EL   K I  + ++ DE+++   +R+V+  K R     +++ 
Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  + +++ F +    L  GR P+ + L  ++K ++ HR +V+ RR+ F ++  + R 
Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+ L++A  NIDE+I IIR+   P+     ++ RF   + Q  AI++++L+ L  LE 
Sbjct: 382 HILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441

Query: 445 YQIKSELD----------NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
             ++ EL           +LLA  EKI +L+   K++ N+IA +              G 
Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALI---KEETNEIAEK-------------FGD 485

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFK 546
            R T       ++  ++  +I+KE + ++IS+ G+I+ + + +           ++++  
Sbjct: 486 ERKTDIVADEVEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLA 544

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           E D L     A T D I+ ++  GKAY L    +   S    G  I+ L+ ++ +++I T
Sbjct: 545 EDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-T 603

Query: 605 AFV----YDSTCKLLVVSSKG 621
           A V    +D    LL+ ++ G
Sbjct: 604 AVVSLKEFDDKTYLLMATAGG 624


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 381/702 (54%), Gaps = 81/702 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+ A  E G      + KS
Sbjct: 18  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILFAAHESGHLPERRYVKS 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++DGD AAA RYTE+R
Sbjct: 78  ARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPAAAMRYTESR 137

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDF+  Y+ E  EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 138 LAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 197

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P ++IE L E + GPDFPTGG+I+  R    ++Y  GRG   +RA+
Sbjct: 198 LGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLIL-GRAGTRQAYATGRGSIIMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  + D+RDES  D +RIV+ 
Sbjct: 257 SHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRDGMRIVVE 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + +++ F  NM  L+ GR P++M L  +L  +   R EV+ R
Sbjct: 317 IKRDAM-AEVVLNQLYRYTPLQSSFGCNMVALNGGR-PELMNLKDLLLAFNDFREEVVSR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R  +L GL IA  NIDE+I +IR    P   +  +++R           
Sbjct: 375 RTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLI 434

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL+ L  L   ++  EL  L  E      +L
Sbjct: 435 ALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDELKKLADEIADYLDIL 494

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ EV+ +F+       R+T   E+  +D +   + +I +E + V +S
Sbjct: 495 RSRVRIQAIVKTELAEVRALFATP-----RKT---EIIDSDFSVEDEDLIAREDMVVTVS 546

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G++        R+ +      S +  ++ D +     A T   +L  S  G+AY    
Sbjct: 547 HAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKV 606

Query: 575 --LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
             LP            N+L  +  GE I  ++ L  ++   T++    T  ++  ++ GN
Sbjct: 607 WRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDE---TSW---DTLDVMFATASGN 660

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
               + S+     R GK  +K+             GDH+  V
Sbjct: 661 VRRNKLSDFTTVNRNGKIAMKLDP-----------GDHIVHV 691


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/620 (38%), Positives = 354/620 (57%), Gaps = 67/620 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SI++L+E I  PDFPTGGII      + + YR GRG   +RA+   E
Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTGGIIY-GINGVKDGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIDLKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +++HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALINGQ-PKLCNLKDLIQVFISHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAIIRN   P PV                 M++R 
Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIAIIRNAPTP-PVAKAELMTRAWDSSLVREMLTRA 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 HADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++AE + +  +L   ++    I  E+  +K  F + T LG RR +  E S  D +T  +
Sbjct: 488 EVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQ-TKLGARR-SHIEHSSFDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTL-----PAGN 579
             S  G+ Y L     PAG+
Sbjct: 604 CFSDRGRLYWLKVWEVPAGS 623


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES  + +R
Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + + +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES  + +R
Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + + +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/627 (37%), Positives = 360/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 26  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +DE+ VDF+D Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 146 DPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E A   + NP+ + E+LLE +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 206 REVAEGAQWFLANPQATQEELLEALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + D+RDE++     R
Sbjct: 265 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 381

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR     D  +  ++    + E Q
Sbjct: 382 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLMGLLEIDEIQ 441

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L ++ ++ +++L S ++Q   I+ E+  + E F 
Sbjct: 442 ANAILEMQLRRLAALERQKIVQEHDELQSKIDEYNAILASPERQRQIISEELTAIVEKFG 501

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V I+  G++        RS K     
Sbjct: 502 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYVKRTKTEDYRSQKRGGKG 553

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 554 VRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 613

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        Y++   L++ +  G
Sbjct: 614 PDEKIARILAIRDYEAVPYLVLATKSG 640


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 353/619 (57%), Gaps = 62/619 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ SI++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T  E S  D +T  +
Sbjct: 488 DIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        RS K       A   KE D +     A+T D +L
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDYLL 603

Query: 565 LLSTDGKAYTLPAGNLLSG 583
             S  G+ Y L    + SG
Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/591 (38%), Positives = 359/591 (60%), Gaps = 33/591 (5%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D  ++  T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+E
Sbjct: 3   DQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG++DG
Sbjct: 63  AGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V P+K P LL NG++GI
Sbjct: 123 DPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A + LID+P+ ++E+L+  + GPDFPTG  I+     I ++Y
Sbjct: 183 AVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKIL-GLSGIRQAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRA+  VE + +    IVVTEIPYQV K++LIE IA L+  K +  + D+RD
Sbjct: 242 TTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLRD 301

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  + +RIV+  ++  + P++++  ++  + ++  F + M  L  G  P+++ L  IL+
Sbjct: 302 ESDRKGMRIVIELRSDVV-PEIMLNKLYKHTQLQDSFGIIMLALVNGH-PRILNLKQILE 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L H+++V+ R+  + ++    R  IL+GL IA  ++DE+IA IR   N +  K  ++ 
Sbjct: 360 YYLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALME 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L++ Q  AIL++RL+ L  LE  +I+ E   ++A    ++ +L+   +       ++
Sbjct: 420 KFGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIMGIAREDL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI-------- 530
            +VK+ F  +     RRT+       D   L+ + +I +E + + IS++ +I        
Sbjct: 480 LDVKKRFGDA-----RRTSIV----PDTGDLETEDLIAEEDVVITISHQSYIKRQALTNF 530

Query: 531 -------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAY 573
                  R +K+ S  +     K +GD  +  L A T D IL  +  G+ Y
Sbjct: 531 RNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVY 581


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 260/748 (34%), Positives = 404/748 (54%), Gaps = 89/748 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L ++ NPE +I++L+E I  PDFPT GII    + + E YR GRG   +RA+   E
Sbjct: 191 ISACLHVLHNPECTIDELIEIIPAPDFPTAGIIY-GVQGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    R
Sbjct: 250 DLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKSTQLQDNFGMNMVAL-VDNQPRLLNLKQMLEYFLQHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407
            ++    R  +L+GL +A  NIDE IAII                               
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVREMLARAE 428

Query: 408 ------RNEDKPKPVM-------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                 RN  +P+ ++          + L+++Q   IL +RL+ L  LE+ +I +E   +
Sbjct: 429 TDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKEV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-KSTDLGRRRTTFCEVSRADKATLQQA 513
           ++E   +  LL   ++    I  E++EV+  F     D GRR  +F E++  +  T  + 
Sbjct: 489 MSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRR--SFIEMNATELFT--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +SN G++        R+ K       A   K  D +     A+T D IL 
Sbjct: 545 LITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDIILC 604

Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFVYDS 610
            S  G+ Y L     P G+  S RG           GE I +++ +   QD    +V+ +
Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTS-RGKPIVNMFPLIEGEKITVILPIKGYQD--DHYVFMA 661

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668
           T    V  ++ + F        +N RK        +E    +   +T G H V +  +  
Sbjct: 662 TSLGTVKKTRLSDF--------SNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAG 713

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           K + F  + +  M R  +GVR  +  DG
Sbjct: 714 KAVRFDENDVRPMGRTARGVRGMNLGDG 741


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES  + +R
Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +P++++  ++  + ++  F + M  L +   PQV+ L  IL  ++  ++E
Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q
Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  + 
Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
                G  R T  E+ + +     + +IE + + + +++ G+I+ L        K     
Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           + A   K+ D ++      T   IL  +  GK Y L A  +  +GR   G  I  LI + 
Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIE 589

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
           +N+ I T       D     ++ +  G   I++++EI   ++ RKG        E+   +
Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683
            VK+T   + + +V +N   + F+ + +  M R
Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/673 (35%), Positives = 370/673 (54%), Gaps = 41/673 (6%)

Query: 15  ENVKAVSLRFALE--ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           E+ + V L   LE  + YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+GLD    F
Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VGEV+GK HPHGDQSVYD+LVR+AQ F     L+ G GNFG++D D  AA RYT
Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+   AE ++L  +  DAVDF +T++   +EP V P++ PNLL NG++GIAVGMATSI
Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284

Query: 192 PSHNVQEICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN++E+  A +    +PE  ++E LLE +  PDFPTGGIIV+ R    E YR G+GG 
Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344

Query: 251 RVRARWCVEEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            +R    VE+V      G+    +V+T IPYQ  K+ L E+IA+L+ ++ I  + D+RDE
Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   V+    R  D + +++ ++  + ++TR  +N+  L +GR P+V+ L  I++E+
Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGL-VGREPKVLSLMEIMREF 463

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSR--- 420
           LA R + + RR+   +Q    R+ +++G L      D ++A IR  +D P      +   
Sbjct: 464 LAFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP 523

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q +A+L + LR L  LE  ++K+E   L A  E +  LL    +    +A E +
Sbjct: 524 FWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAK 583

Query: 481 EVKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----- 533
           E+++ F   + TD+     T  ++  A K  +   M+   P  V+++NRG+I+ +     
Sbjct: 584 ELRDTFGVDRRTDI----DTDAQI-HAKKMNVTLDML-NSPSLVIMTNRGYIKRIDPAVF 637

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGE 588
                 +   +    + GD +    H +  D +L  +  G+ + + A N+   S    G 
Sbjct: 638 SKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGT 697

Query: 589 AIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
               ++ L   + I      D            L  V+++G       SE +     GK 
Sbjct: 698 PFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKK 757

Query: 641 FLKVSSEEKMKLV 653
            L +   +++K V
Sbjct: 758 ALVLRKGDRLKHV 770


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/665 (36%), Positives = 375/665 (56%), Gaps = 37/665 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  + +  +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GMGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILTLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR+  D P  K  +++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K  F+       RRT    ++ A+    ++ +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTSFATP-----RRTV---ITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                 +A   K+ D+++  L     D +L  S  G     KAY +P  +  S    G  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSSRTS---RGTP 588

Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           I  L+ +   + I +    D  ++ + LV+ +KG      E    +N R     + +S E
Sbjct: 589 IVQLLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIR-ANGLIAISLE 647

Query: 648 EKMKL 652
           E  +L
Sbjct: 648 EGDQL 652


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/628 (35%), Positives = 369/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+T F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDG-APKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++   + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDALLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 344/582 (59%), Gaps = 40/582 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSA
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN+
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+ 
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V    
Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+
Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  +ID II IIR    P   K  +++ + L++ Q  AIL+
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +RL  L  LE  ++++E           +++LA+ E+ID +          I  E+ E++
Sbjct: 426 MRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPERIDKI----------IYEELLEIQ 475

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           E F      G  R T   V     +   + +IE+E + V +++ G+I+ L +        
Sbjct: 476 EKF------GDERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNR 528

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               +  +   + D ++  L   T D +L  +  GK Y + A
Sbjct: 529 GGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 374/634 (58%), Gaps = 43/634 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI 
Sbjct: 9   VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 69  GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   +R+R  +E
Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
               G   IVVTE PY + K+++ E I  L    RI  +  +RDES+ + VR V+  + R
Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFVIEVR-R 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V+ RR+ F
Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
                + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q  AIL++R
Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++       R
Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYANP-----R 480

Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
           RT     EV     +   + +IE+E + + +SN G+I        RS K     +     
Sbjct: 481 RTELMVGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590
            + D ++  +   T D +L  +  G+ Y                LP  NLL     GE I
Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           Q +I+    +DI+  + + +T + +V  ++ + F
Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 258/757 (34%), Positives = 414/757 (54%), Gaps = 37/757 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSA
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP HN+
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +E+  A  A IDN +I+I+++L+ YI+GPDFPTG ++    + + E Y+ GRG   +RA+
Sbjct: 202 KEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTK-MREGYKTGRGSVIIRAK 260

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
              EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  E +RI++ 
Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +PD+++  ++  + +++ F +   +     +P ++ L  I+K ++  +  V+ +
Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSI-NLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIK 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431
           RS F    + +R  IL+ L IA  N+D++I II+N    D+ K  + ++++  E Q  AI
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTNKYNFDEEQNKAI 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F  +  
Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTKEEQDNVLKNQLNEIADKFGDN-- 495

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544
              RRT   +    +     + +I      +++S  G+IR +      +        +++
Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602
            +  D + IA      D +L  +  GK Y     N+ S       + ++  LN   ++D 
Sbjct: 551 VEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610

Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +TA +     K     L  V+ KG     + SE     R GK  + +   +++  V   T
Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLISVFATT 670

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWID 713
           G D + +  E+ K++      +   SR G GVR    +  D  +  +  FK+   +T + 
Sbjct: 671 GQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLEANDVVVGAISSFKLTH-ITTVS 729

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + G       +D    +  R G G  V     R+GKF
Sbjct: 730 NKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 372/643 (57%), Gaps = 41/643 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARIV
Sbjct: 13  VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR++++
Sbjct: 73  GDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E 
Sbjct: 133 SMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192

Query: 200 CEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
             AA+ +IDN      E  I++L++ + GPDFPTG  I+  R+ I ++YR GRG  +VRA
Sbjct: 193 IYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E +  G   I+VTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+ 
Sbjct: 252 ITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ ++++  +F  + ++  F   M  L  G VP+++ L  +L  +L H+ +V+ R
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNLKDMLTYYLKHQEDVVTR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +   + R  IL+G LIA  NIDE+I IIRN     + K  ++ RF L+E Q  AI
Sbjct: 371 RTRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGAI 430

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RLR+L  LE  +I++E + L A+  +   +L    +    I  E+  + + +     
Sbjct: 431 VDMRLRALTGLEREKIENEYNELKAKIAEYKEILADENKLLGVIKTELTAIADKYGDE-- 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RRT+    S  D  T  + +I++E I + ++  G+I+ +     D   +  + G  +
Sbjct: 489 ---RRTSITAYS--DDIT-DEELIKREEIVISMTKLGYIKRMPK---DTFKVQNRGGKGI 539

Query: 552 K-----------IALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNH 598
           K                +T + I+  +  G+ Y +    +  SGR   G AI  L+ L  
Sbjct: 540 KGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLP 599

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           N+  VTA +    +D   K L++++K       + E   N RK
Sbjct: 600 NEK-VTAIIPITGFDK--KYLMMATKNGIVKKTKIEAFENIRK 639


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 353/580 (60%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +   L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTLAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 261/712 (36%), Positives = 410/712 (57%), Gaps = 49/712 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N      E ++ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+
Sbjct: 5   ANDANAPAERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGV 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               A +KS+ IVG+ +G  HPHG  ++YD+LVR+AQ F  RYPLI GQGNFG++DGD A
Sbjct: 65  SSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSMDGDPA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM  +AE +L+ +++D VDF   Y++   EP V PSK PNLL NG+SGIAVG
Sbjct: 125 AAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           M+T+IP HN+ E+ +A + L+ NP+ ++E L+E+I GPDFPTGG IV  R++I  +Y  G
Sbjct: 185 MSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIV-GRDAIYSAYATG 243

Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RG  RVRA + V+ E GR    IV++E+PYQ  K+R++E+IA+ +   +I  + D+RDES
Sbjct: 244 RGRLRVRAEYEVDPEEGR----IVISELPYQENKARVVERIADDVNEGKIEGISDLRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + VRIV+  K R  + D++ E+  +   +E+ F + +N+  +   P+V+ L   L+ +
Sbjct: 300 DRNGVRIVVELK-RGANIDVV-ENRLLDHHLESTFGV-INLALVDGQPKVLSLKESLQHY 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRF 421
           + HRREV+ RRS + +   + R  IL+G L A  N+++++ +IRN    D  +  +   F
Sbjct: 357 IDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGLQESF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q   I+ ++L SL  +E  +I+ E +++    + ++S+LNS ++  + IA E++E
Sbjct: 417 DFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSREKLDSVIADELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539
           VK+ +        RRT+  E    +     + +I +E   VVI+   +I+ +   + D  
Sbjct: 477 VKDDYDDD-----RRTSIIE---DEGQVTHEDLIPEEDCVVVITEDDYIKRMPVENFDPQ 528

Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                 +     KE D +     A++ D +L  +  G+ Y L    +  +S    G++  
Sbjct: 529 NRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARGKSAI 588

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFI----VEESEIIANTRKGKTFL 642
            LIDL+  +++ TA V      D  C  +V     N ++      E E I +T      L
Sbjct: 589 NLIDLDDGEEL-TAVVSTDEFGDDECITMVTR---NGYVKRTCCSEFENILSTGIIAAKL 644

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           + S E     V   TGD V +  E    + FS  ++ EM R      G++LQ
Sbjct: 645 EDSDELIDVDVTDGTGDLV-IATEAGMTIRFSESEVSEMGRSARGVNGIKLQ 695


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 370/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++ + + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/629 (35%), Positives = 369/629 (58%), Gaps = 29/629 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+E+ +  V +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ + E GL     
Sbjct: 19  LIEQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKP 78

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD++VRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 79  YRKCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRY 138

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 139 TESRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNI 198

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A   LIDNP+  +++++++I GPDFPTGG+I+  R  I  +Y  GR    
Sbjct: 199 PPHNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIM-GRAGIRAAYATGRARLT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE+  G   IVVTEIPY V K+RLIE IA+L+  KRI  + D+RDES  D   
Sbjct: 258 LRARTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++  S ++    + M  L +G VP+VMPL  +L  ++  + E+
Sbjct: 318 IVIELKRDANAQVVLNRLYSYSQLQDTVGVIMLAL-VGGVPKVMPLKDVLTHYIDFQGEI 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLTENQV 428
           + RR+ + ++    R  IL+GL +   N DE+I+IIR+ +D+P  K  +++RF +T+ Q 
Sbjct: 377 VTRRTKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIARFGITDIQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ ++L  L  LE  +I+ EL  +L   ++ +++L    +  + +  E+  ++  ++ 
Sbjct: 437 TAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYAD 496

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 RRT    VS        + +I  E   + +++ G++        R+ +     +
Sbjct: 497 E-----RRTEIVAVS---GEVDIEDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGGRGV 548

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
           S +  +E D ++      T D I+  ++ G+ + L    +  G     G  I  L+ ++ 
Sbjct: 549 SGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLSMDS 608

Query: 599 NQDI-----VTAFVYDSTCKLLV-VSSKG 621
           ++ +     VT   Y+   + LV V+ KG
Sbjct: 609 DEKVTALIKVTPDEYEREDRCLVMVTRKG 637


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  +  K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRSHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EISIE+L+ +I GPDFPTG II   R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                     ED P+ + V   ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++        + +      SA   KE D ++  L  +T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSR 595

Query: 570 GKAYTL 575
           G+ Y L
Sbjct: 596 GRLYQL 601


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/684 (34%), Positives = 378/684 (55%), Gaps = 29/684 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+VG+
Sbjct: 6   LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 65

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ +++ 
Sbjct: 66  VLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELSH 125

Query: 142 L-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ V E+ VDF   ++   +EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 126 TALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEVV 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LALID+P++S E+LL +I GPDFPTGG I+++ + I  +Y  GRG   +R     EE
Sbjct: 186 DGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDT-QGIRAAYLTGRGSITLRGVARFEE 244

Query: 261 V--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +  G+G      +V++E PYQV K+  IEK+AEL    RI  + D+RDES      V+  
Sbjct: 245 IQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P  +++ ++ L+ +++ F   +  L  G  P+ + L  IL+ +L  R   L R 
Sbjct: 305 LKREANPQAVLQQLYKLTPLQSNFGAILLALVNGE-PRQLSLKEILQHFLQFREATLNRM 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
               +Q + R+ E + G+L+A  +++ +I ++R        K  + +R   T  Q + IL
Sbjct: 364 FRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAETIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            + LR L  LE  ++  E   L    E++  LL+  ++  N +  E+R +K+ F      
Sbjct: 424 AMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT---VVISNRGWIR--SLKSHSVDLSALHFKE 547
             RRT     S  +    Q    E+   T   +  + +G++R   L S     +    + 
Sbjct: 481 --RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQREL 538

Query: 548 GDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           G+ + + L   T ++ IL+L+  GKA+TLP   +    G    + L+  L + + IV  F
Sbjct: 539 GEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATF 598

Query: 607 VYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
             D       L+V+S +G    +  +E++  T++G T LK+   +++        DH   
Sbjct: 599 TLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGY 658

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR 683
            V +     ++L   + QIP M R
Sbjct: 659 SVVLATSGGRVLRLDVQQIPLMGR 682


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/593 (39%), Positives = 343/593 (57%), Gaps = 26/593 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTKIEMDTGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/623 (36%), Positives = 363/623 (58%), Gaps = 39/623 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIV
Sbjct: 12  VNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 72  GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T+IP HN+ E+
Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNLSEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  GRG   +RA+  +E
Sbjct: 192 IAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAKVDIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+    R 
Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR+ F 
Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLSLKQILQYYLQHQEEVVRRRTEFD 369

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  Q  AIL++RL
Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAILDMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +++ E   ++A       +L   ++    I  E+ E++E F      G  R
Sbjct: 430 VRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF------GDER 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548
            T   V     +   + +IE+E + V +++ G+I+ + +            +  +   E 
Sbjct: 484 RTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHED 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593
           D ++  +   T D +L  +  GK Y +               P  NLL G   GE+IQ +
Sbjct: 543 DFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GIDSGESIQAV 601

Query: 594 IDL---NHNQDIVTAFVYDSTCK 613
           I++   N ++D    +++ +T +
Sbjct: 602 INIGRGNGDEDNEHRYLFFTTLQ 624


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/623 (36%), Positives = 363/623 (58%), Gaps = 39/623 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIV
Sbjct: 12  VNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 72  GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T+IP HN+ E+
Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNLSEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  GRG   +RA+  +E
Sbjct: 192 IAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAKVDIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+    R 
Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR+ F 
Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLSLKQILQYYLQHQEEVVRRRTEFD 369

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  Q  AIL++RL
Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAILDMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +++ E   ++A       +L   ++    I  E+ E++E F      G  R
Sbjct: 430 VRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF------GDER 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548
            T   V     +   + +IE+E + V +++ G+I+ + +            +  +   E 
Sbjct: 484 RTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHED 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593
           D ++  +   T D +L  +  GK Y +               P  NLL G   GE+IQ +
Sbjct: 543 DFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GIDSGESIQAV 601

Query: 594 IDL---NHNQDIVTAFVYDSTCK 613
           I++   N ++D    +++ +T +
Sbjct: 602 INIGRGNGDEDNEHRYLFFTTLQ 624


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/666 (35%), Positives = 376/666 (56%), Gaps = 42/666 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ +  E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244
           T IP HN++EI   A   +++P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++     R+V+  K R     +++ +++  + ++  FP NM  L  G VP+ + LDG ++
Sbjct: 313 TSGRTGQRLVIVLK-RDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            W++H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++ 
Sbjct: 371 HWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+
Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREIIASPERQRGIVSDEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+ E +        RRT        D     + +I +E + V I+  G+ +  ++ S  
Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585
                   +     +E D +       TT R LL  T+       K Y LP G   S   
Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+     ++I        YD    L++ + +G       SE  +N   G   +
Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658

Query: 643 KVSSEE 648
            +  +E
Sbjct: 659 NLRQDE 664


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 362/621 (58%), Gaps = 44/621 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N++ +++   ++  YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL       K
Sbjct: 21  QNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVK 80

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGD  AAYRYTEA
Sbjct: 81  CAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEA 140

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT +AE +L  +D+D VDF   +++  +EP++ P+K PNLL NG++GIAVGMAT+IP H
Sbjct: 141 RMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPH 200

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A + +++NP+ +++ +L+++ GPDFPTGG I   +  I  +Y+ GRG F +RA
Sbjct: 201 NLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFI-HGKGGIKNAYQNGRGRFMMRA 259

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +      IVVTEIPYQV KS LI+KIA+L+  K I  + D+RDES  D   ++ 
Sbjct: 260 KVAVEHLPNKD-AIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVI 318

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              RS  P++++  ++  + M+  F + + +  +   P+ M L   L  ++ HR +V+ R
Sbjct: 319 ELKRSAQPEIVLNQLYKHTQMQESFSM-IFLAVVNNQPKEMGLVQALNHFIDHRIDVVRR 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS--------- 422
           R+ + +Q    R  IL+G L+A  ++D +IAIIR   N    +  +V+ F+         
Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437

Query: 423 -----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                       +  Q DAIL L+L  L +L   +I SEL ++     + +S+L S K+ 
Sbjct: 438 GKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKKL 497

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI- 530
            + I  E+ ++++      D G  R T  +   A+ +   + +I  E + V +S+ G++ 
Sbjct: 498 RSVIVKELEQIRK------DYGDERRTIIQDEAAELSL--EDLIADEQVAVTVSHSGYLK 549

Query: 531 -------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581
                  R  +        +  ++ D +++   A T   +L+ +  G+ Y L    +  +
Sbjct: 550 RTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEI 609

Query: 582 SGRGHGEAIQLLIDLNHNQDI 602
           +  G G+ I  L+ L   + +
Sbjct: 610 AAAGKGKHIGNLVALQPGESV 630


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/631 (37%), Positives = 361/631 (57%), Gaps = 39/631 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K
Sbjct: 18  QRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE 
Sbjct: 78  CARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTEC 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  ++  +++ +DED VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 138 KMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+   A   ++NPE S E LL+ +I    GPDFPTG ++V  R+ I E+YR GRG  
Sbjct: 198 NLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSI 256

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++    
Sbjct: 257 TMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTG 315

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 316 QRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQ 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E
Sbjct: 374 IEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLMDLLEIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E 
Sbjct: 434 IQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEILASPVRQRGIVSAELAAIVEK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542
           F      G  R T       D +   + +I +E I V +S  G+++  ++ +VD  A   
Sbjct: 494 F------GDDRKTMLVPYDGDMSI--EDLIAEEDIVVTVSRGGYVK--RTKTVDYRAQKR 543

Query: 543 -------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
                     KE D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L
Sbjct: 544 GGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANL 603

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +    ++ I        Y++T   LV+++KG
Sbjct: 604 LAFQPDEAIAEILAIRDYEAT-PYLVLATKG 633


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/581 (39%), Positives = 341/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F+
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  + +E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A+I NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   +
Sbjct: 185 PHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSITM 243

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
           R    +E +   GR     I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  E
Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  + R   P +++ +++  + ++  F  NM  L  G+ P+++ L   L  +L  
Sbjct: 304 GMRIVVELR-RDAYPRVVLNNLYKQTPLQANFGANMLALVNGK-PELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLT 424
           R   + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR+  D P  K  ++ RF L+
Sbjct: 362 RIHTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I  E   LL +   ++ +LN  ++    +  E  ++KE
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADLNDILNRRERILEIVEQEAIQIKE 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---- 540
                     RRT         + T    +I  E   ++++ +G+I+ +  ++ +     
Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533

Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               S    KE D +K  L     D IL  +  G AY L A
Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKA 574


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 269/763 (35%), Positives = 404/763 (52%), Gaps = 93/763 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SI++L+E I  PDFPT GII    + + + YR GRG   +RA+   E
Sbjct: 191 VDACLHLLRNPEASIDELMEIIPAPDFPTAGIIY-GIQGVKDGYRTGRGRVVMRAKVHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++K +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PKLCNLKDLIKVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAIIRN   P PV                 M++R 
Sbjct: 369 NLRKARERGHVLEGLAVALANIDEFIAIIRNAPTP-PVAKVELMAKPWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++ E E +  +L   ++    I  E+  +K  F + T LG RR +  E S  D +T  +
Sbjct: 488 EVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQ-TKLGARR-SLVEHSSFDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTLPAGNLLSG-RG-------------HGEAIQLLIDLNHNQDIVTA--FVY 608
             S  G+ Y L    +  G RG              GE I +++ L   +    A  +V+
Sbjct: 604 CFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQYVF 663

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665
            +T    V  +  + F        +N RKG   + V  +E   L+      G H V +  
Sbjct: 664 MATSMGTVKKTPLDEF--------SNPRKG-GIIAVGLDEGDYLIGAALTDGKHDVMLFS 714

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  K + F  + +  M R  +GVR    +DG    VI   + E
Sbjct: 715 DGGKAVRFDENDVRPMGRNARGVRGMMLEDG--QGVIAMLVAE 755


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 259/778 (33%), Positives = 423/778 (54%), Gaps = 74/778 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L     +KKSA
Sbjct: 27  VDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  AA RYTEARM
Sbjct: 87  ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEARM 146

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+GMAT++P+HN+
Sbjct: 147 TRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTHNL 206

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A +  ID+ +  I+ L+ YI GPDFPT GII   +E I E+Y  G+G  ++RAR 
Sbjct: 207 REVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314
            +EE  +    IVV E+PY V K+ L EKIAEL+   +I  + DIRDES+    +R+++ 
Sbjct: 266 EIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLIIE 325

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  +F  +D+ET F + +N+  +   P+V+ L  ++K ++ HR EV+ +
Sbjct: 326 LK-KGVATQIVLNQLFKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +     +  IL+GLLIA  NI+E+I IIR   N D  +  +++RF L+E Q  AI
Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQAI 443

Query: 432 LNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           L++ L+ L  LE+ +I+ EL          ++LLA  EKI +++   K +  +IA +  +
Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVI---KDELKKIAEKYGD 500

Query: 482 VK--EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +  EI  K+ D         E+   D       +I  E + V I+ +G+I+ + + S  
Sbjct: 501 DRRSEIIGKTND--------TEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYR 545

Query: 540 LSALHFKEGDSLKIA--------LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
                       K            A T D + + +  GKA+ +    +  L+    G++
Sbjct: 546 TQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKISQGKS 605

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I+ +++L   + I + F    +D    +++V+  G    +E   +    ++G   L + +
Sbjct: 606 IKFILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLEN 665

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
            +++  V  V +GD   +       L  + ++I +M R     KG+ L         D I
Sbjct: 666 NDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKMGRAAAGVKGIALD-------DDDI 718

Query: 702 CFK---ICEGLTWI----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           C     I +G + I    +  G+  +  + ++ G    RGG G +  K   ++GK +S
Sbjct: 719 CVSGNAIHKGESLIVITENGIGKRLSSKQFNVKG----RGGKGQIYIKPDNKTGKVVS 772


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/659 (37%), Positives = 374/659 (56%), Gaps = 64/659 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G     A+ K
Sbjct: 6   QDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKAYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +ISI++L+++I GPDFPT  +I   R  I E+Y+ GRG   VRA
Sbjct: 186 NLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALI-NGRRGIEEAYKTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  +    +G   IVVTEIPYQV K++L+EKI ELI  K+I  +  I D S  E +R+ +
Sbjct: 245 KAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRLEI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ 
Sbjct: 305 DIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PKLFNLKQIIEAFVKHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ + ++    R  IL+GL IA  NID +I +IR     D+ +  +++R          
Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL LRL  L  LE  +I SE   +L 
Sbjct: 423 LEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILV 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  +   +L S ++    I  E+  VK  F+ +     RRT   E++ A      + +I 
Sbjct: 483 QIGEYLHILTSIERLREVIREELELVKTNFNDA-----RRT---EITTASSDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
            G+ Y L    L  + RG  G  I  ++ L  N+ I TA +    YD    +L+ ++ G
Sbjct: 595 RGRLYWLKVYQLPEASRGARGRPIVNILPLEENERI-TAILPVASYDEDKFVLMATAGG 652


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/630 (37%), Positives = 364/630 (57%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E G      + K
Sbjct: 13  DRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMFEGGYRPDRGYFK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ GQGNFG+   D AAA RYTE+
Sbjct: 73  SSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTES 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D+D VDF+  Y+    EPVV PS+FPNLL NG+SGIAVGMAT+IP H
Sbjct: 133 RMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E  EA    +++PE+S E+LLE +I    GPDFPTG +IV  R  I E+YR GRG  
Sbjct: 193 NLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIV-GRRGIEEAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   +EE  +G  C+VVTE+PY V    L   IAEL+   +I  + D+RDES+    
Sbjct: 252 IMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGIADVRDESSSRTG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R   P +++ +++  + ++T F  NM  L  G VP+ + LD  ++ ++ H+
Sbjct: 312 QRLVIVLK-RDAVPKVVLNNLYKHTQLQTTFGANMIALVDG-VPRTLRLDQFVRHYIRHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ F ++  + R  IL+GLL A   IDE+I +IR   +  + +  +++   + E
Sbjct: 370 IDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQTGLMALLEIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  QI+ E D L+A+    + +L S  +Q   ++    E+ EI
Sbjct: 430 VQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDILGSEMRQRRLVS---EELGEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
            +K  D  R + T  E   +     ++ +I +E + V I+  G+         R+ +   
Sbjct: 487 IAKYGDERRTKITAYEGDMS-----EEDLIAEEDVVVTITRGGYAKRTSIDAYRAQRRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     ++ D ++      T   +L  +  G     KAY LP       RG   A  L
Sbjct: 542 KGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEA-ARDARGQHLANLL 600

Query: 593 LIDLN-HNQDIVTAFVYDSTCKLLVVSSKG 621
            +  + H  +I++   YD    L++ +  G
Sbjct: 601 AMQPDEHVMEILSLRNYDEAPYLVLATRSG 630


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 352/630 (55%), Gaps = 79/630 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGGII   R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIY-GRSGIVDAYRTGKGRLHI 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDS 418

Query: 409 -----------------------------NEDKPKPVMV----SRFSLTENQVDAILNLR 435
                                         ED   P  +    + + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLG 493
           L  L  LE+ ++  E  +LL +  +++S+L    +    I  E+ E+ E F   + TD+ 
Sbjct: 479 LHRLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIV 538

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
             RT F   SR D       +I ++ + + +S  G+ ++         K      SA   
Sbjct: 539 DSRTDF---SRED-------LIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAM 588

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           KE D +   +   T   +L  + +G+ ++L
Sbjct: 589 KEDDVIDHLVVTSTHATVLCFTDNGRVFSL 618


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/699 (35%), Positives = 380/699 (54%), Gaps = 75/699 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++  E G      + KS
Sbjct: 15  DIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIG  HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++DGD  AA RYTE+R
Sbjct: 75  ARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P ++IE+L E + GPDFPTGG+I+  R    ++Y  GRG   +RA+
Sbjct: 195 LGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMIL-GRAGTRQAYATGRGSVIMRAK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             VEE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  + D+RDES    +RIV+ 
Sbjct: 254 SHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRSGMRIVVE 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  D+++  ++  + +++ F  NM  L+ GR P++M L  +L+ ++  R EV+ R
Sbjct: 314 IKRDAM-ADVVLNQLYRFTPLQSSFGCNMVALNGGR-PELMNLKDLLQAFVDFREEVVSR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F +     R  +L GL IA  NIDE+I +IR    P   +  ++ R           
Sbjct: 372 RTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGRDWPAHDIAPLI 431

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL+ L  L   ++  EL  L  E      +L
Sbjct: 432 ALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTLADEIADYLDIL 491

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ EV+E F+       R+T   E+   D +   + +I +E + V +S
Sbjct: 492 RSRARIQGIVKGELAEVREQFATP-----RKT---EIVDFDGSVEDEDLIAREDMVVTVS 543

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G++        R+ +      S +  ++ D +     A+T   +L  S+ G+AY    
Sbjct: 544 HAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 603

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625
             LP   + +    G+A+  ++ L    + +T  +          T  ++  +++GN   
Sbjct: 604 WRLP---MAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRR 660

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            + S+     R GK  +K+             GDH+  V
Sbjct: 661 NKLSDFTTVNRNGKIAMKLDP-----------GDHIVHV 688


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/690 (34%), Positives = 394/690 (57%), Gaps = 41/690 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K ARIVG+ +GK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA RYTEAR+++++  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP HN+ E   A + 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 206 LIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +IDN      + +IE+++E I GPDFPTG  I+  R+ I ++YR GRG  + RA   +E 
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATIL-GRKDIEQAYRTGRGKIKTRAVSEIET 239

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +  G   I+VTE+PY V K++L+EKIA L+  K++  + D+RDES ++   V+    R  
Sbjct: 240 MDNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++  ++  + ++  F + M  L  G  P+V+ L  +L E+L H+++V+ RR+ F +
Sbjct: 300 NANVILNQLYKHTQLQDSFGVIMLALVDGE-PKVLNLLQMLDEYLKHQKDVVTRRTKFEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437
              + R  I+KGLLIA  NIDE+I IIR        K  ++ RF L++ Q  AI+++RLR
Sbjct: 359 NKAEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIERFGLSDAQSQAIVDMRLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  L    +++E  +L+A+ + + S+L    +    I  EI  +++ F      G  R 
Sbjct: 419 QLTGLAREDLEAEYADLMAKIDYLKSILADENKLLTVIKEEIEVIRDKF------GDERR 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGD 549
           T   ++  D +   + +I +E   V ++N G+I+     + KS +     +  +   + D
Sbjct: 473 TKIGINVGDLS--DEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQNRGGKGIKGMQTIDKD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV 607
            +K      T D IL L+  G+ Y L    +  +GR   G AI  L+ L   + I +A V
Sbjct: 531 FMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIVNLLQLQPGEKI-SAMV 589

Query: 608 ----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGD 659
               ++    L++ + KG    ++++ I+A T   K+ ++       +E + + +    D
Sbjct: 590 QMKEFEEDKYLIMATKKGT---IKKTPIMAYTNIRKSGIQAITLREDDELIDVTISDNND 646

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           ++ ++ +  + + F    + E  R   GVR
Sbjct: 647 NIMLITKKGQGIKFRETDVRETGRSAMGVR 676


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/593 (39%), Positives = 343/593 (57%), Gaps = 26/593 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPI 587


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 376/709 (53%), Gaps = 56/709 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   L+  YL YA+S I  RA+PD RDG KPVHRRI++AM E G      + KS
Sbjct: 14  GISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMYEEGRTHDKKYVKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+G+ HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG++DGD  AA RYTE+R
Sbjct: 74  ANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVDGDPPAAMRYTESR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ AE ++  +D++ VDF D Y+    EP V PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 134 MTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGGIAVGMATNIPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI EA LA++D+PE+S E LL  + GPDFPTGG I+  R    ++   GRG   +R +
Sbjct: 194 LGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEIL-GRSGARQALLTGRGSVIMRGK 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE + +    I+VTE+PYQV K+ LIE IAE++  KRI  + DIRDES      ++  
Sbjct: 253 ASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIRDESDRQGMRMVIE 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  S ++T F +NM  L+ GR PQ M L  +L+ +L  R EV+ RR
Sbjct: 313 LKRDASGDVILNQLYRYSALQTSFGVNMLALNHGR-PQQMGLRKLLEIFLDFREEVVVRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------KPVMV 418
           + F +     R  +L GL IA  NIDEII IIR+   P                  P++ 
Sbjct: 372 TRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAKNWPAGDMSPLIE 431

Query: 419 ------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LTE Q  AIL L L  L  L   +I  E   L A   +  ++L+
Sbjct: 432 LIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTLAASIAEYLAILS 491

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++    +  E+ EVK ++++      RR+   +    +     + +I +E + V +++
Sbjct: 492 SRERILGIVREELEEVKALYAEP-----RRSLIVD---GEADIEDEDLIPREDMVVTVTH 543

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G++        R+        S +  K+ D++     A T   +L  S+ GKAY L   
Sbjct: 544 SGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYKLKVW 603

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESE 630
            L  G  +  G+A   L+ L+ ++ +                 ++  +  G+    + S+
Sbjct: 604 RLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRNKLSD 663

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            +   R GK  +K+   + +  V   T D  V +   + + + F++D++
Sbjct: 664 FVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEV 712


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/662 (35%), Positives = 374/662 (56%), Gaps = 42/662 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G    A+F
Sbjct: 19  VPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASF 78

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS+R+VG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA RYT
Sbjct: 79  SKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYT 138

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP
Sbjct: 139 ECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIP 198

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRG 248
            HN++E+   A   +++P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG
Sbjct: 199 PHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++  
Sbjct: 258 SITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGR 316

Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  K  ++   +++ +++  + ++  FP NM  L  G VP+ + LDG ++ W++
Sbjct: 317 TGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRHWVS 374

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++    +
Sbjct: 375 HQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGLLDV 434

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL+L+LR L  LE  +I+ E D L A  + +  ++ S ++Q   ++ E+ E+ 
Sbjct: 435 DEAQAEAILSLQLRRLAALERLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIV 494

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           E +        RRT        D     + +I +E + V I+  G+ +  ++ S      
Sbjct: 495 EKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHR 546

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEA 589
               +     +E D +       TT R LL  T+       K Y LP G   S    G+ 
Sbjct: 547 GGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS---KGQH 602

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+     ++I        YD    L++ + +G       SE  +N   G   + +  
Sbjct: 603 VANLLAFQPGEEIAQVMELRDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQ 662

Query: 647 EE 648
           +E
Sbjct: 663 DE 664


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/683 (37%), Positives = 384/683 (56%), Gaps = 67/683 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL       K AR+VG V+G 
Sbjct: 13  LKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVGHVLGH 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTE R+T++AE +L+
Sbjct: 73  YHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIAEKMLE 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF+  ++    EPVV P+K PNLL NG +GIAVGM T+IP HN++E+C+  +A
Sbjct: 133 DIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVCDGIIA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I NP ISIE+L+ +I GPDFPTGG+IV  R+ I+E+YR G+G   +R +  VEE     
Sbjct: 193 YIKNPNISIEELMNFIKGPDFPTGGVIV-GRDGIIEAYRTGKGKIILRGKVDVEE----- 246

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++ EIPY V K++L+EKIA+LI   ++ L + +RDES  E +R+V+  K    DP  
Sbjct: 247 DKIIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREGIRVVIELKE---DPYS 302

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            ++ ++  + ++  F + M  L +   P+++ L  ++  ++ HRREV+ R++ + ++  +
Sbjct: 303 ALKKLYDHTPLKVTFNVVMLAL-VNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKAE 361

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441
            R  I++GL+ A   +DE+I +I+  D  K     ++    +TE Q +AIL LRL+ L +
Sbjct: 362 ERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQMLTR 421

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE   +  E + L    +++ S+L   K+    I  E+REVK  F  +     RRT    
Sbjct: 422 LEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGDN-----RRTEII- 475

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL----KIALHA 557
               DK  L++ +   E   V ++  G I+             F+ G +L    KI L A
Sbjct: 476 ----DKEILKEVV---EEFGVAVTLDGQIK------------RFEIGKALRSNPKILLRA 516

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL----LIDLNHNQDIVTAFVYDSTCK 613
            +   ILL S+D KAY++          H   I L    L      + + T  V  +   
Sbjct: 517 MSNLDILLFSSD-KAYSI----------HARDIPLDFTPLSKFISAEKVETGVV--AKGD 563

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           ++++S  GN   V   E     R G     + + E +          V +  +N  ++ F
Sbjct: 564 VVILSKDGNIKKVRLEEFANAKRAG-----IIAGENIGFARLYEDGDVIIATKNGYIVRF 618

Query: 674 SIDQIPEMSR-GKGVRLQSYKDG 695
              +IPE  R  KGV+  + ++G
Sbjct: 619 RSSEIPEYGRSAKGVKAITLREG 641


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 257/745 (34%), Positives = 408/745 (54%), Gaps = 54/745 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+  G 
Sbjct: 18  MKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTSGD 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  +++
Sbjct: 78  YHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQLME 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V+    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 138 DLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLNELIQATLL 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           ++ NP +SI++++  +  PDFPTGGII   R  I E++  GRG   +RA   VEE     
Sbjct: 198 VLQNPAVSIDEIMGVMPAPDFPTGGIICGYR-GIKEAFHTGRGRLLLRAVIRVEENEENP 256

Query: 265 -SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               ++V EIPY V KSRLIE+IA+LI +K I  + D+RDES +D   +L    R    +
Sbjct: 257 DKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMRILIELKRGEIVE 316

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  +F  SD++  F  NM  L  G +P+VM +  ++  W+ HR EV+ RR+ F +   
Sbjct: 317 VILNQLFKYSDLQITFGCNMLALDKG-LPKVMNVKQLIAAWVDHRIEVVRRRTRFELNKA 375

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + R  IL+G L A  ++DE++ +IR   N ++ +  ++ RF LTE Q +A+L+L+L  L 
Sbjct: 376 EARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQANAVLDLKLYQLT 435

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I  E   LL + + + ++L S     + I  E+ E++    K+   GR+     
Sbjct: 436 GLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQ----KNHRSGRK----T 487

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK-EGDSL 551
           ++  A+     + +I  E + + IS   +I+ +   +          ++ +H K E D++
Sbjct: 488 QIIAAESEVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREEDAI 547

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA-IQLLIDLNHNQDIVTAFV- 607
           K    A T D +L+ +  G+ Y L    +  +GR   G+  I LL D+  ++ I T    
Sbjct: 548 KGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVLRV 607

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA--- 662
             ++    +L+ + KG     E SE     RKG   L +           V GD V    
Sbjct: 608 SNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDI-----------VEGDEVVTAR 656

Query: 663 VVGENRKLLIFS-------IDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +V +++++++F+        DQ  +  M R  +GV+  + KD     V C  +    T +
Sbjct: 657 LVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETIL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVG 737
                 + +  N        RGGVG
Sbjct: 717 IVCENGFGKRSNVEDFRQTNRGGVG 741


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/612 (40%), Positives = 356/612 (58%), Gaps = 64/612 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +KKSAR+V
Sbjct: 11  VNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  RY LI GQGNFG++DGD+ AA RYTE RM +V
Sbjct: 71  GDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRMAKV 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +   ++++ VDF D Y+  +SEP VFP+++PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 AHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNIPPHNLTEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALID+P+   E LL ++ GPDFPT GII      I E+Y  GRG   +RAR   E
Sbjct: 191 LNATIALIDDPDTDDETLLSHVPGPDFPTAGII-NGAAGIREAYLTGRGRVVMRARTHFE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           E  R G   I+VTE+PYQV K+RLIE+IAEL+  K+I  + ++RDES +D +RIV+  + 
Sbjct: 250 EDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMRIVIELRR 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             L PD+++ +++  + M++ F +NM V  +G  P+ + L  IL  +L HRREV+ RR+ 
Sbjct: 310 GEL-PDVMLNNLYQQTQMQSVFGINM-VAIVGGQPRTLGLRDILTVFLRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NE---------------------- 410
           + ++    R  IL+GL +A  NID +IA+I+     NE                      
Sbjct: 368 YDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHALLERA 427

Query: 411 ----DKPKPVMVS-------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                +P+ +           + L++ Q  AIL +RL  L  LE+ +I  E  +LL   E
Sbjct: 428 DAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSLL---E 484

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           KI  LL+  + + +++   IR+  E+ +   + G  R T       D +   + +I +E 
Sbjct: 485 KIIDLLDILRSE-SRLMQVIRD--ELVAMIEEFGDARRTEIVFDYEDLSI--EDLIAEED 539

Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
             V +S  G+I+        S +      S+   K+ D ++  + A T    L+ +  G 
Sbjct: 540 RVVTLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGR 599

Query: 571 ----KAYTLPAG 578
               K Y LP G
Sbjct: 600 VYWRKVYQLPQG 611


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 377/660 (57%), Gaps = 67/660 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M++ G  +  ++ K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNKSYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P+LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA +DN +ISI++L+++I GPDFPT  +I   R  I E+Y+ GRG   VRA
Sbjct: 186 NLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALI-NGRRGIEEAYKTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +  VE   +G   I++TEIPYQV K++L+EKI EL+  K+I  +  + D S  E +R+ +
Sbjct: 245 KASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIRLEI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ 
Sbjct: 305 DIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVKHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ + ++    R  IL+GL IA  NID +I +IR     D+ +  ++SR          
Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAPM 422

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL LRL  L  LE  +I  E   +L 
Sbjct: 423 LEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEILL 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++  +L S   + N++   IRE  E+  KST    RRT   E++ A      + +I 
Sbjct: 483 QIGELIRILTS-SVRLNEV---IREELELV-KSTYNDERRT---EITAASGDINLEDLIA 534

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++        + +      SA   KE D ++  L A+T D IL  S+
Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSS 594

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            G+ Y L    L  + RG  G  I  ++ L  N+ I        T  L V S   + F+V
Sbjct: 595 RGRLYWLKVYQLPEASRGARGRPIVNILPLEDNERI--------TAILPVASYDEDKFVV 646


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 366/623 (58%), Gaps = 41/623 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIV
Sbjct: 12  VNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 72  GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ ++++ VDF++ Y+  + EP + P++FPNLL NG +GIAVGM T+IP HN+ E+
Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTNIPPHNLSEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  G G   +RA+  +E
Sbjct: 192 ISAIHILMNNEDATTADLMEAVPGPDFPTGGIVM-GKSGIRKAYETGHGTIILRAKVDIE 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
               G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+    R 
Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR+ F 
Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLGLKEILQHYLVHQEEVIRRRTEFD 369

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  +IDEIIAIIRN       K  +++ +SL+  Q  AIL++RL
Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLMNNYSLSSKQAQAILDMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGRR 495
             L  LE  +++ E + ++A       +L + +++ N+I   E+ E++E F      G  
Sbjct: 430 VRLTGLEREKVEDEYNKVMAAITDYRDIL-AHRERINEIIYKELLEIQERF------GDE 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
           R T   V     +   + +IE+E + V +++ G+I+ + +            +  +   +
Sbjct: 483 RRTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMATSEFKTQNRGGRGIQGMGVHD 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQL 592
            D ++  +   T D +L  +  GK Y +               P  NLL G   GE IQ 
Sbjct: 542 DDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GISSGENIQA 600

Query: 593 LIDL---NHNQDIVTAFVYDSTC 612
           +I++   N ++D    +++ +T 
Sbjct: 601 VINIGRDNGDEDNENRYLFFTTL 623


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/702 (35%), Positives = 396/702 (56%), Gaps = 33/702 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF++ Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NPE++   L+E I GPDFPTG +++  R  I  +Y  GRG   
Sbjct: 181 PPHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGRGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  E VR
Sbjct: 240 LRSRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++E
Sbjct: 300 FVIEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYILHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIR        +  ++ RF L+E Q
Sbjct: 358 VITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQRFELSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D L+A    +  +L+  ++    I  E+ EVK    
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDALIALIADLADILSKPERVQTIIIEEMDEVKR--- 474

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539
           K  D  R      EV     +   + +IE+E + + +SN G+I+ L        K     
Sbjct: 475 KYADARRTELMVGEVL----SLEDEDLIEEEDVLITLSNMGYIKRLAQDEFRAQKRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +      + D ++  +   T D +L  +  G+ Y L A  +   GR   G  I  L+ L+
Sbjct: 531 VQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLD 590

Query: 598 HN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLV 653
                Q I+ A   +   K    ++KG       +    N R+ G   L +  ++++  V
Sbjct: 591 DGETIQTIINARKVEVADKYFFFTTKGGVVKRTSASEFNNIRQNGLRALNLKEDDELINV 650

Query: 654 VKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
           +   G    ++G      + F+   I  M R     +GV+L+
Sbjct: 651 LLTDGTEDIIIGTRSGYSVRFNESSIRNMGRSATGVRGVKLR 692


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 349/602 (57%), Gaps = 56/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMRKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNIPPHNMTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258
             A +AL++NPEI+I++L+E+I GPDFPTG II   R  I+++YR GRG   VRA+   +
Sbjct: 191 VSACMALLNNPEITIDELMEHIPGPDFPTGAII-SGRAGILQAYRTGRGRIYVRAKAEVI 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +  +    I++ EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES +D   V+    R
Sbjct: 250 TDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ +++  + +++ F +NM  L  G+ P+VM L  I+  +L HRREV+ RR+ +
Sbjct: 310 GEMGDVVLNNLYAQTQLQSVFGINMVALENGQ-PKVMNLKEIIDAFLRHRREVVTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------- 409
            ++    R  +L+GL IA  NID II +I+N                             
Sbjct: 369 LLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVAMLEQAG 428

Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           ED  +P        +    + L+  Q  AIL LRL  L  LE  ++ +E    L E    
Sbjct: 429 EDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKLKEIADY 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L    +    I  E+ EV E F      G  R T    S+ D +   + +I  E   
Sbjct: 489 LHILGDSDRLKQVIREELEEVVEEF------GDERLTEIVDSQHDLSV--EDLITPEDRV 540

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS+ G+ ++         +   +  SA   K+ D ++  L A T   IL  +  GK Y
Sbjct: 541 VTISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVY 600

Query: 574 TL 575
            L
Sbjct: 601 WL 602


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 345/568 (60%), Gaps = 20/568 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+     +KKSA
Sbjct: 11  IENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPEKPYKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM
Sbjct: 71  RIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D+   Y+E + EP V P++FPNLL NG +GIAVGM T+IP HN+
Sbjct: 131 SKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  G+G   +RA+ 
Sbjct: 191 AEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVM-GKSGIRHAYESGKGTITLRAKV 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE    G   I+VTEIPY V K++L+E+IAEL   KR+  + D+ DES  D   ++   
Sbjct: 250 DVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDRDGMRIVIDV 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR+
Sbjct: 310 RRDMSASVILNNLYKLTPLQTSFSFNMVAIVNG-APKVLSLKSILEHYLVHQEEVIRRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL GL IA  +ID II IIR+    D  K +++ R+ L++ Q  AIL+
Sbjct: 369 EFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMERYDLSDKQAQAILD 428

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++E +NL+A    +  +L   ++    I  E+ E++  F      G
Sbjct: 429 MRLVRLTGLERDKVENEYNNLMALITDLKDILAKPERIKKIIYDELLEIQSKF------G 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
            +R T   V     +   + +IE+E + + +++ G+I+ L +            +  +  
Sbjct: 483 DKRRTELLVGEV-LSIEDEDLIEEEDVVIALTHNGYIKRLPASEFKVQNRGGRGIQGMGV 541

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573
            + D ++  +   T + +L  +  GK Y
Sbjct: 542 HDDDFIEHLISTSTHEVLLFFTNTGKVY 569


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 380/693 (54%), Gaps = 63/693 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    ++ K 
Sbjct: 21  DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 80

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD SVY +LVR+AQPF     L+ GQGNFG++DGD  A+ RYTEA+
Sbjct: 81  ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  ++  +D+D VDF+  Y+E++ EPVV PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 141 MAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AALAL+D+P ++ + LL+ + GPDFPTGG I+  R +   + R GRG   VR R
Sbjct: 201 LGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIM-GRTAPRNALRDGRGSVIVRGR 259

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             VEE+ +    IVVTE+PYQV K  LIE+IAE++  KR+  + D+RDES  + +RIV+ 
Sbjct: 260 ASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLEGISDVRDESDRQGMRIVIE 319

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++  ++  + M++ F +NM  L+ GR P+ M L  +L+ +L  R EV+ R
Sbjct: 320 LK-RDASGDVILNQLWRYTAMQSSFGVNMLALNHGR-PEQMGLRDLLQIFLDFREEVVVR 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----------EDKPKPV--MVS-- 419
           R  F +     R  +L GL +A  NIDE+I IIR+           + KP PV  M++  
Sbjct: 378 RVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEARERLQAKPWPVGDMMALV 437

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            LT+ Q  AIL L L  L  L    I  E + L    +   ++L
Sbjct: 438 ELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIFGEANGLADTIQGHLTIL 497

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +  K     I  ++ +VK+ F+       RRT   E    D     + +I +E + V ++
Sbjct: 498 SDRKNVLAIIRDDLIDVKDKFAVP-----RRTLIGE---GDGEMEDEDLIPREDMVVTVT 549

Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G+++ +  ++           S +  K+ D++     A T   +L  +T+GKAY    
Sbjct: 550 HGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKT 609

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIV 626
             LP GN  S    G+A   L+ +     I  V     D T      ++  +S G+    
Sbjct: 610 WRLPLGNPQS---RGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSSGDVRRN 666

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           + S+     R GK  +K+  +++M  V   T D
Sbjct: 667 KLSDFATVNRAGKIAMKLEGDDRMVGVGLCTAD 699


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/627 (37%), Positives = 360/627 (57%), Gaps = 35/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 25  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 85  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 145 APLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARFPNLLINGSAGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++NPE      ++ L+E I GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 205 REVAAGAQWYLENPEADPDTLLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 263

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE++     R
Sbjct: 264 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQR 322

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+AH+ E
Sbjct: 323 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 380

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR     D  +  ++    + E Q
Sbjct: 381 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRASQTVDVARGGLMELLEIDEIQ 440

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D+L A+ ++ +++L S ++Q   I+ E+  + + F 
Sbjct: 441 ANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAILASPERQRQIISEELAAIVDKFG 500

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
           +      RR+        D     + +I +E I V I+  G++        RS K     
Sbjct: 501 ED-----RRSALVPF---DGDMSIEDLIAEEDIVVTITRGGYVKRTKTDDYRSQKRGGKG 552

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597
           +     KE D +     + T   +L  +  G+ Y   A  L   GR   G+ +  L+   
Sbjct: 553 VRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDVGRDARGQHVANLLAFQ 612

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        YD+    LV+ +KG
Sbjct: 613 PDESIAQILAIRDYDA-APYLVLGTKG 638


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 252/759 (33%), Positives = 426/759 (56%), Gaps = 48/759 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  + +       KSARIVG+V+GK
Sbjct: 17  MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLKSARIVGDVLGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA++ ++++ IL 
Sbjct: 77  YHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEAKLKKISDEILA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF++ +++  +EP V P+K P LL NGTSGIAVGMAT++  HN+ E  +A +A
Sbjct: 137 DLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPHNLSESIDAIVA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN EI+I++L+++II PDFPTGGII    + + +++  GRG   +RA+   EEVG  S
Sbjct: 197 YIDNKEITIDELMKHIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKINFEEVGNRS 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES  + +RIV   K+ ++ P++
Sbjct: 256 -AIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIVYELKHDAI-PNV 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + ++T F +N   L  GR P+ + L  I+  ++ HR EV+ RR+ F ++   
Sbjct: 314 VLNMLYKYTSLQTSFSVNNIALVKGR-PEQLNLKNIIHHFVDHRHEVVIRRTEFELKKAK 372

Query: 385 RRVEILKGLLI---AYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438
            R  IL+G +       ++D+ IAIIR+   P   K  ++  F L++ Q  AIL+LRL  
Sbjct: 373 ERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQAQAILDLRLAR 432

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  +E  +I++E D ++      + +L +  +++  I  E+ E+KE +      G  R +
Sbjct: 433 LTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKY------GDERRS 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDS 550
             + S  + +   + +I  E + + IS+ G+I+  SL  + V         A   ++ D 
Sbjct: 487 EIDYSGGEMSI--EDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           L+  + A     +L  +  GK + L     P G+ +S    G A+Q LI++  + D + A
Sbjct: 545 LEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKIS---KGRAVQNLINIEPD-DKIKA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR---------KGKTFLKVSSEEKMKLVVKV 656
           ++  +  K     ++ N  +V ++  I  T           G   +++   +++      
Sbjct: 601 YIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLT 660

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWID 713
           +GD  + +  +N K + F  ++   + RG  GVR  S +D   +  +I     E  T + 
Sbjct: 661 SGDSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + Y +        +  RGG G +      ++G  ++
Sbjct: 721 VSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIA 759


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 259/767 (33%), Positives = 400/767 (52%), Gaps = 87/767 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  YL YA+S I  RAIPD RDG KPVHRRI+ AM E G     A+KKSA +V
Sbjct: 14  VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD ++YD+L R+AQPF    PL+ GQGNFG++DGD  AA RYTE RM   
Sbjct: 74  GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D+D V+FRD Y+    EPVV P+++PNLL NG  GIAVGMAT+IP HN+ E+
Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV---ESRESIVESYRLGRGGFRVRARW 256
            +A +AL+D P+I+  +LLE++  PDFPTGG I+    +R++++E    GRG   +RA+ 
Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKALLE----GRGSVILRAKT 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E++ +G   I+V EIPYQV K+ ++EKIAEL+  KRI  + D+RDES    VR+V+  
Sbjct: 250 SIEDIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIEL 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K +  + ++++  ++  S ++T F +NM  L  GR PQ   L   L+ ++ HR+EV+ RR
Sbjct: 310 K-KDANAEVILNQLYRWSPLQTSFGVNMLALIGGR-PQQAGLRVFLETFIHHRKEVVVRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415
           + F ++    R  +L GL +A  NIDEIIA+IR    P+                     
Sbjct: 368 TKFDLRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVE 427

Query: 416 --------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                   +      LTE Q  AIL+LRL  L  L   +I  E + L      +  +L S
Sbjct: 428 LVADPRSQIRDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRS 487

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  + I  E+ + K  F        RR+   E    D     + +I +E + V +++ 
Sbjct: 488 PTRIRDIIRNELLDSKASFGVE-----RRSAIIE---GDLGIEDEDLIPREDMVVTLTHG 539

Query: 528 GWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+++  +L ++          + +  K+ D +     A T   +L  S+DG     K + 
Sbjct: 540 GYVKRTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWR 599

Query: 575 LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           LP G          NLL     G  I  ++ L  +++    +       ++  ++ G   
Sbjct: 600 LPLGAPNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQY------DVMFATTAGTVR 653

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQI---- 678
             + S+ +   R GK  +K+  E    L V++  +   V +V    + + F +  +    
Sbjct: 654 RNKLSDFVQVNRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFA 713

Query: 679 PEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              S G +G+RL+         +I   I   +       R+Y R  N
Sbjct: 714 SRNSTGVRGIRLKEN-----DRLISMAILNHIDVTTDEARAYMRHAN 755


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 338/559 (60%), Gaps = 23/559 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ YA+STI +RA+PD+RDG KPV RRI++A  + GL       KSA IVGEV+ K
Sbjct: 13  VKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSAGIVGEVMKK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L RLAQP+ QRYPLI GQGNFG+IDGD  AA RYTEAR++ +   +L+
Sbjct: 73  YHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARLSSIGYEMLR 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V+F   Y+    +P V P+  PNLL NG++GIAVGMATSIP HN+ E+ +A +A
Sbjct: 133 DIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNLSEVIDALVA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID P +S++++++ + GPDFPTG  +  SR+ I E+Y  GRG  +VRA+   E+   G 
Sbjct: 193 LIDQPGLSLDEIMKLLPGPDFPTGARL--SRKGIREAYASGRGSLKVRAKVRNED-KNGR 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V TEIPYQV K+ LI +IA L   K I  +  +RDES      +     R  +P ++
Sbjct: 250 AMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVELKRGANPQVV 309

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  S ++  F +N+  +  G  P+V+ L  +L+ +L HRREV++RR+ + +    +
Sbjct: 310 LNKLYKHSRLQASFTVNLLAIVNGE-PKVLSLPELLRHYLNHRREVVYRRTQYELSEAKK 368

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  +L+GLLIA  +IDE+IA+IR   + ++ +  +++RF+L++ Q  AIL++RL+ L  L
Sbjct: 369 RAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIARFALSDIQAQAILDMRLQRLVGL 428

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +++ E   L      + ++L   K+ W  +  E+ E+K  +  +     RRT   E 
Sbjct: 429 EREKLQEEYRELQETIAYLSAILQDEKRLWGVVKEELLEIKNKYGDA-----RRTQLTEF 483

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
              ++    + +IE EP+ + ++++G++        R+     V   A   KE D     
Sbjct: 484 ---EEGFNPEDLIEDEPMVITLTSQGFLKRTPLEAYRAQGRGGVGAQAGKTKEEDEAVQV 540

Query: 555 LHAHTTDRILLLSTDGKAY 573
             A   D +L  +  G+ Y
Sbjct: 541 FVASMHDDLLFFTNRGRVY 559


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/719 (34%), Positives = 391/719 (54%), Gaps = 48/719 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-S 62
           D  +N      + +  VSL      RYL YA S I+ RA+PD+RDG KPV RRI++ M  
Sbjct: 6   DADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVMYH 65

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ L   +  +K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI GQGNFG+I 
Sbjct: 66  DLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGSII 125

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA RYTEA++T +A  ++  +    V+ R+ Y+    EPVV PS+FP+LL NGT G
Sbjct: 126 GLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGTQG 185

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP HN+ E+ +A L LIDNP+ ++ +L++Y+  PDFP GG IV  R  +  +
Sbjct: 186 IAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELRNT 245

Query: 243 YRLGRGGFRVRARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           Y  GRG  +VR  W  +++  G+    +V+T IPY V+   L+  +  +  +K++P L  
Sbjct: 246 YETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQLVT 305

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + DES E+  +R+VL  K+ + D + +M  ++  + +E  F  N   L       + P  
Sbjct: 306 VADESNEELGMRLVLEVKHEN-DAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPAQ 364

Query: 359 GILKEWLAH----RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---- 410
             LKE L H    R EV+ +R  F +  +++R+ IL+G  I +  +D+ + +IR+     
Sbjct: 365 CNLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGKA 424

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D  + +M + F L E Q DAIL + L  + +LE  +I  EL    AE E++  LL S  +
Sbjct: 425 DAAQKLMKA-FPLDEIQTDAILEMALYRISELEIDRIIEELKEKRAEAERLRKLLASETK 483

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATLQQAMIEKEPITVVISNR 527
            W  IA E+ E+ + +       +RRT      E++  D +    A I KE   VV+++ 
Sbjct: 484 MWRLIADELGELGKTYGN-----KRRTGLGSSEEIAEFDPS----AYIVKENTNVVLTSD 534

Query: 528 GWIRSL-KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           GWI+ + +  SVD   +  +EGD++   L A T D+I+  + DG AYTLP   + +  G+
Sbjct: 535 GWIKRVGRIQSVD--KMRVREGDTVINVLPASTLDQIVFFADDGTAYTLPIDQIPASSGY 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK-------------LLVVSSKGNAFIVEESEI-I 632
           GE +   I L     IV     D                 LL+ +  G    +  S    
Sbjct: 593 GEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDEESPLPYLLIATEMGQVMAISFSSFRP 652

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPEMS-RGKGVR 688
            +T+ G+ + +++  +K+ + V +  +H    +  E  +++ F + ++P ++  G+GV+
Sbjct: 653 PSTKVGRKYCRLAKGDKV-VFVDLIREHYTMFLATEQARVIHFELAEVPLLAGPGRGVK 710


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/679 (34%), Positives = 382/679 (56%), Gaps = 32/679 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L Y++S I  RA+PD+RDG KPV RRI+++M EM +    A++KSARIVG+ +GK HPH
Sbjct: 32  FLEYSMSVIVSRALPDVRDGLKPVQRRILYSMHEMNIGPDKAYRKSARIVGDTMGKYHPH 91

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y +LV LAQP+  R  L+ G GNFG++DGD  AA RYTEARM+++A  +L+ +++
Sbjct: 92  GDSSIYGALVYLAQPWNMRTVLVDGHGNFGSMDGDDPAAMRYTEARMSKIAVEMLRDLEK 151

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VD  D Y+ ++ EP V PS++PNL+ NG+SGIAVGMAT++  HN+ E  +   A++DN
Sbjct: 152 DTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSSGIAVGMATNVAPHNLGETIDGIFAVMDN 211

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+  +L+ Y+ GPDFPTG  I+  R  I +++  GRG   +RA+  +EE+  G   IV
Sbjct: 212 PEITATELMNYMKGPDFPTGAYIL-GRSGIRQAFETGRGSVIMRAKTKIEEMPNGKSRIV 270

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V E+PY V K+ L+E+IA L+  K I  + D+RDES  D   V+    + + PD+++  +
Sbjct: 271 VYELPYMVNKASLVERIATLVRDKVIEGITDLRDESNMDGIRVVIELRKDIQPDVMLNQL 330

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + +++ F +N NV+    VP+   +  +LK ++A + EV+ RR+ F ++    R  I
Sbjct: 331 YRSTPLQSNFGVN-NVVLFNGVPRQASMIDLLKGYIAFQDEVIVRRTQFDLKKAQDRAHI 389

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL IA  N+D II  IR+   P    P ++  F L E Q  AIL+++ R L  LE  +
Sbjct: 390 LEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLMEGFGLDEIQAKAILDMQFRRLTGLEREK 449

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E  +LL +      +L++  +    I  E+ EVK  F+       RR+   E+  A 
Sbjct: 450 IENEYQDLLIKIADFQDILSNHARVLQIIRDELSEVKAKFNDP-----RRS---EIIDAI 501

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAH 558
                + +I  E I + +S+ G+I+ L + +          +  +   + D +   +   
Sbjct: 502 ADVEDEDLIPVENIIITLSSNGYIKRLTTDTYHVQNRGGKGIKGMELHKDDIIDQFISMS 561

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTCKL 614
           T D +L+ +  GK Y +   N+   S    G     LI +   ++I  +  +  D   K 
Sbjct: 562 THDHLLVFTDKGKVYRIKGYNVPEFSRTSKGIPAINLISMEKTENIRALVPYSQDHDSKF 621

Query: 615 LVVSSKGNAF---IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
           L   +K         +E E I   + GK  +K++ ++++  V    G+  + + G N K 
Sbjct: 622 LFFVTKQGIIKRTTFDEYENI--NKNGKIAIKLNEDDELAFVRSTDGNAEIIIAGSNGKA 679

Query: 671 LIFSIDQIPEMSR-GKGVR 688
           + F  + +  + R  +GV+
Sbjct: 680 VRFLENTVRPLGRTARGVK 698


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 258/765 (33%), Positives = 429/765 (56%), Gaps = 43/765 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +K + L   +++ ++ YA+S I  RA+PD +DG KPV RRIIH M+E+G      +K
Sbjct: 3   QRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPYK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RYTE
Sbjct: 63  KSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM+++A  +++ +++D VDF   Y+ E+ EP V PS+ PNLL NG++GIAVGMAT+IPS
Sbjct: 123 SRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIPS 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +A LA+  NP+I+I +L++ YI GPDFPTG  I+  R +I ++Y  G G   +
Sbjct: 183 HNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYIL-GRGAIKKAYETGNGLIVM 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RA+  +E++G     I+VTE+PY V K+RLIEKIA  +  K I  + ++RDES  E +RI
Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R + P++++  ++ L+ ++T F +N N+  +   P+ + L  ++  +L H+ +V
Sbjct: 302 VIELR-RDVQPEVILNQLYKLTALQTTFGVN-NIALVNGEPKTLSLKEMINVYLEHQEDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+ F ++  + R  IL GL  A   ID II +IR+    + +   ++  F ++E Q 
Sbjct: 360 IRRRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLMDEFDMSERQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI  ++L+ L  LE  +I++EL+ LL   E I  L +    +   IA   +E+ EI +K
Sbjct: 420 KAIREMQLQRLAGLEREKIENELNTLL---ETIADLKDILANKERIIAIIDQELLEIKAK 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
             D  +RRT   E+ +       + +I +E + + ++N G+++ +   +          +
Sbjct: 477 YGD--KRRT---EIIQGSFDIEDEDLIPEEDVVISLTNNGYVKRMPIDTYKAQNRGGKGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
             +     D +   ++  T D +L+ +  GK Y +   N+     +  G  I  L++++ 
Sbjct: 532 KGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFGRQAKGLPIINLLNMDK 591

Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650
           ++ +     +T    D +  L  V+  G   +V+ + +    N R+ GK  L +   +++
Sbjct: 592 DEQVKTMISITPSEVDESHFLFFVTKDG---LVKRTGLPEFENIRQSGKLALTLREGDEL 648

Query: 651 KLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + VK+T     + +   N K + F  + +  M R   GV+  +  D  I  V      E
Sbjct: 649 -VDVKLTNGKSEILLAAANGKAIRFDENDVRPMGRSASGVKGMNVDDSHIIGVTTN--TE 705

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +    + Y +        L KRGG G        ++G+ +S
Sbjct: 706 GQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/723 (35%), Positives = 402/723 (55%), Gaps = 61/723 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D +R+V+  K R   P +++ +++  + +++ F  NM  L +   P+++ L   L+ +
Sbjct: 301 DRDGIRVVIELK-RDAYPRVVLNNLYKQTPLQSNFGANMLAL-VDNEPRLLTLREFLRVF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L  R EV+ RR+ + ++  + R  IL+GLLIA  ++D +IA+IR   +    K  +V  F
Sbjct: 359 LDFRVEVITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQ 471
            L+E Q DAIL ++LR L  LE  +I+ E          L ++LA+KE+IDS++    QQ
Sbjct: 419 GLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDILAKKERIDSIIEEELQQ 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I    R         T + +R     E++  D    +QA+I       +++ +G+I+
Sbjct: 479 IKTIHATPRR--------THIEQRE---GEIAETDLIANEQALI-------LVTEQGYIK 520

Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +  ++ +         +    KE D +   +     D +L  +  G  Y+L A ++ +G
Sbjct: 521 RMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTG 580

Query: 584 R--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+++   + I +      +     L++++ KG  FI + +    +  + 
Sbjct: 581 SRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKG--FIKKTALAAFSNIRS 638

Query: 639 KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSY 692
              + +S E  ++++ V     +   ++G  + + I F  D  Q+  + R  KGV+    
Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698

Query: 693 KDG 695
           + G
Sbjct: 699 RSG 701


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 339/584 (58%), Gaps = 24/584 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEG 578


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/473 (42%), Positives = 307/473 (64%), Gaps = 10/473 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      +  IE+LL  + GPDFPTGG+I+ +   I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGT-AGINEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 246 VRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDESDRQG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+V+ L  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLAL-VNNEPKVLNLYDMLKYYLIHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I+IIR   N  + K  ++ RFSL++ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMERFSLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K+    I  EI
Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAILADKKKLLGVIRTEI 477


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/619 (37%), Positives = 351/619 (56%), Gaps = 65/619 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF+D Y+  + EP V PS+ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NP+ +I++L+E +  PDFPT GII      + + YR GRG   +RA+   E
Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L+E Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 429 ADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE + +  +L   ++    I  E+  +K+ F +S  LG RR +  E S  D +T  + 
Sbjct: 489 VMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSK-LGARR-SLVEHSAFDLST--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTL-----PAGN 579
            S  G+ Y L     PAG+
Sbjct: 605 FSNRGRLYWLKVWEVPAGS 623


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/620 (36%), Positives = 353/620 (56%), Gaps = 71/620 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V  + +   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  DF   +KK
Sbjct: 4   DSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++D D AAA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L  +D+D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++  H
Sbjct: 124 RMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMAPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA  D+P IS E L+++I GPDFPTGGII   R  IV++YR G+G   +R 
Sbjct: 184 NLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIY-GRSGIVDAYRTGKGRLHLRG 242

Query: 255 RWCVE---EVG--RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           ++ +E   E G  +    IV TEIPYQ  K++LIEKIAEL+  K++  + +IRDES +D 
Sbjct: 243 KYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKDG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++ ++F+ + +E+ F +NM  L  G+ P++M L  ++  ++ HR+
Sbjct: 303 MRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQ-PKIMTLRDLIAAFVRHRQ 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII------------------------- 404
           EV+ RR+ F ++    R  +L+GL IA  NID II                         
Sbjct: 362 EVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGG 421

Query: 405 ---------------AIIRNEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLEEY 445
                           +I  ED   P  +      + L+ +QV+AIL+++L  L  LE+ 
Sbjct: 422 VIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQD 481

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVS 503
           +++ E   +LA   ++ S+L++  Q    I  E+ +++E F  ++ T +   R+ F   S
Sbjct: 482 KLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDF---S 538

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
           RAD       +I ++ + + +S  G+ ++         K      SA   K  D +   +
Sbjct: 539 RAD-------LISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMV 591

Query: 556 HAHTTDRILLLSTDGKAYTL 575
              T + +++ +  G+ + L
Sbjct: 592 VTSTHNNVMIFTDRGRVFGL 611


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 388/680 (57%), Gaps = 46/680 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        
Sbjct: 5   VFDKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP
Sbjct: 125 EARLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            HN++E+  A + +ID     N +  IE +L+ I GPDFPTG  I+ +R  I E+YR GR
Sbjct: 185 PHNLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTR-GIEEAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S  
Sbjct: 244 GKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R ++P++++  ++  + ++  F + M  L +   P+VM +  +L+ +L H
Sbjct: 304 EGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLRLYLKH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR   N    K  +++RF LT
Sbjct: 363 QEEVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIARFDLT 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI+++RLR+L  LE  +++SE + L+ +  ++ ++L   K   + I  EI  + +
Sbjct: 423 DVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAILADRKLLLSVIREEILIIND 482

Query: 485 IFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKS 535
            +        RRT+      ++S  D       +I +E + + ++  G+I+     + KS
Sbjct: 483 KYGDE-----RRTSIGFDEFDISMED-------LIPRENVVITMTKLGYIKRMTVDTFKS 530

Query: 536 HS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590
            +     +  +   + D +K      T   I+  +  G+ Y +    +   S    G AI
Sbjct: 531 QNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEASRTARGTAI 590

Query: 591 QLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKV 644
             ++ L  ++ I TA +    Y+    L + + KG   +V+++ I   AN RK       
Sbjct: 591 INILQLMPDEKI-TAMIPIKEYEDGKFLFMATEKG---LVKKTPITDYANVRKTGLAAIT 646

Query: 645 SSEEKMKLVVKVTGDHVAVV 664
             E+   + VK+T +   +V
Sbjct: 647 LREDDRLIEVKITDNEEDIV 666


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 345/594 (58%), Gaps = 51/594 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS++  L   YL YA+S I  RAIPD+RDG KPVHRRI+++M+E  +    A KK AR+V
Sbjct: 13  VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LVR+ Q F  RYPLI GQGN+G++DGDS AA RYTE+R++++
Sbjct: 73  GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLSRM 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF   Y++ + EP V P+KFP LL NG+ GIAVGMAT+IP HN+ EI
Sbjct: 133 AVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGEI 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+I NP++++E+LL  + GPDFPTGG+I   +  IV++Y  GRG   +R R  VE
Sbjct: 193 IDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIY-GKSGIVQAYTTGRGSITMRGRSQVE 251

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           +  +G    +V TEIPYQV K+RL+ KIAE +  KRI  + ++RDES  E +RIV+  K 
Sbjct: 252 KTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELK- 310

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + + P +++  ++ L+D++  F +    ++ GR P V+ L   L  ++ HRREV+ RR  
Sbjct: 311 KDIFPQVVLNQLYRLTDLQATFGVINLSIANGR-PAVLSLKDTLSHFIEHRREVVTRRCR 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------------K 412
           F ++  + + E+++GL +A  +ID I+A IR                            +
Sbjct: 370 FELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRAGR 429

Query: 413 PKPVMV-----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           P+P          + L+E Q  AIL +RL  L  LE  ++  E   L    E++ ++L  
Sbjct: 430 PEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAILAD 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                N I  E+ E+K  F       +RRT   E+  A+     + +I++E + V IS+ 
Sbjct: 490 MGLLMNVIVMELEEIKARFGD-----KRRT---EIVPAEAEIQMEDLIQEEDMVVTISHA 541

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           G++        R+ +     +  +  +E D +     A T   +   S  GK +
Sbjct: 542 GYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVF 595


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/631 (37%), Positives = 355/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +M E G      + KS
Sbjct: 17  DIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMFSMHENGHTPDKPYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQPF  R PLI GQGNFG++D D  AA RYTE+R
Sbjct: 77  ARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFGSVDNDPPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +DE  VDF+  Y++++ EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ALID P++S+ +L+E + GPDFPT   I+  R  I  +Y  GRG   +RA+
Sbjct: 197 LGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATIL-GRGGIRNAYSTGRGSIIMRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E + +    I+ TEIPYQV K+ LIE+IAEL+  K+I  + D+RDES  D   ++  
Sbjct: 256 AEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVADLRDESDRDGMRIVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + +++ FP+NM  L+ GR P+++ L  +L  ++  R  V+ RR
Sbjct: 316 LKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGR-PELLTLKDVLVAFVDFRESVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------------- 412
           + FR+        +  GL IA  NIDE+I +IR                           
Sbjct: 375 TKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALMERLWPAKDMAPLVA 434

Query: 413 ----PKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               P+ V+       L+E Q  AIL+LRL+ L  L   +I   L+ L AE  +   +L 
Sbjct: 435 LIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALNKLAAEIAEYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++ +  +  E+  VK  ++       RRT   ++   D     + +I +E + V +S+
Sbjct: 495 SREKLFGIVKDEMIAVKTAYATP-----RRT---QIVDGDGDVEDEDLIAREDMVVTVSH 546

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G+I        R+ +      S +  KE D +     A T   +L  S+ G+AY     
Sbjct: 547 AGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRAYKEKVW 606

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   L + +  G+A+  L+ L  N+ I T
Sbjct: 607 RLP---LAAPQARGKALVNLLPLEQNERITT 634


>gi|332529392|ref|ZP_08405353.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 345/610 (56%), Gaps = 60/610 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDGFKPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L ++ NP  SI++L+E I  PDFPT GII    + + + YR GRG   +RAR   E
Sbjct: 191 VDACLHVLKNPGASIDELMEIIPAPDFPTAGIIY-GMQGVKDGYRTGRGRVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRREV+ RR+ F
Sbjct: 310 GELPEVVLNNLYKQTQLQDTFGMNMVALVGGQ-PKLCNLKDLIVVFLDHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVREMLTRSR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L+E Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 429 ADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE E +  +L   ++    +  E+  +K+ F + T LG RR+   E +  D AT  + 
Sbjct: 489 VMAEIENLLDILARPERVAAIVGEELAGIKQEFGQ-TKLGARRSV-VEHNAQDLAT--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  E   V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 605 FSNRGRLYWL 614


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 339/584 (58%), Gaps = 24/584 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEG 578


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 400/741 (53%), Gaps = 80/741 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 AHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII    + + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L + R P+++ L  +L+ +LAHRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLRQMLEYFLAHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMSKAWDSALVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE   +  +L   ++    I  E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 IMAEIADLLDILARPERITTIIIDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVV 617
            S  G     K Y +P G   S    G  I  +  L+  +    I+    +D+   + + 
Sbjct: 600 FSNRGRLYWLKVYEVPQG---SRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEHFIFMA 656

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSI 675
           +++G       +E  +N RK         E    +   VT G H V +  +  K + F  
Sbjct: 657 TARGTVKKTALTE-FSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDE 715

Query: 676 DQIPEMSR-GKGVRLQSYKDG 695
           + +  M R  +GVR  + ++G
Sbjct: 716 NDVRPMGRQARGVRGMNLEEG 736


>gi|153007330|ref|YP_001381655.1| DNA gyrase subunit A [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/591 (39%), Positives = 362/591 (61%), Gaps = 28/591 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +V
Sbjct: 28  VAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 87

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE+R+ ++
Sbjct: 88  GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLERL 147

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +D++ VD+   +++   EP+V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 148 ADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   LI+NP+++I +L+ +I GPDFPT GII + R+ I  +Y  GRG  +VRAR  +E
Sbjct: 208 LDAVEHLIENPKVTIPELMRFIPGPDFPTAGII-QGRDGIRAAYEKGRGTIQVRARASIE 266

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +     IVVTEIPYQV K++L+E IA+L+  KR+  + D+RDES+ +   V+    R
Sbjct: 267 VHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELKR 326

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++ +++  + M+T F + +  +  G+ P+++ L  +L+ ++AHRR+V+ RR+ F
Sbjct: 327 DAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQ-PRILNLKELLERFVAHRRDVVTRRTRF 385

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL GL IA  ++DEII +IR   + D  +  +++RF+L+E Q  AIL ++
Sbjct: 386 ELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITRFALSELQAKAILEMQ 445

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I  EL  +     ++  +L S K     IA E+REVK++F+      RR
Sbjct: 446 LQRLTGLERQKILDELAEVQKIILRLKEILASEKVLMEVIAGELREVKQLFADE----RR 501

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
                E +  D +T  + +I +E + V +S+ G++        R+ +      +    ++
Sbjct: 502 TEILGEAT--DYST--EDLIAEEEMVVTVSHAGYVKRNPVSLYRAQRRGGRGKTGAATRD 557

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQL 592
            D L+    A T   +L+ S  GK Y L      PAG    G+     +QL
Sbjct: 558 EDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGKPIVNLVQL 608


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++ + + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 77/719 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G     A++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLTGRGSIAIRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ +RI + 
Sbjct: 247 AEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     +  IL GL IA  NIDEII II+    P   K  +++R           
Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN- 622
                       P  N+L  +G  E I  ++ L  NQD      +D+   ++  ++KGN 
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKGD-EHITNIMPLPENQD-----EWDN-LNIMFATAKGNI 649

Query: 623 --AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
             + +++  +I +N   GK  +++  ++K+  V     D H+ +  ++ K L F ++ +
Sbjct: 650 RRSDLLDFKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESL 705


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 77/719 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G     A++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLTGRGSIAIRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ +RI + 
Sbjct: 247 AEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     +  IL GL IA  NIDEII II+    P   K  +++R           
Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN- 622
                       P  N+L  +G  E I  ++ L  NQD      +D+   ++  ++KGN 
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKGD-EHITNIMPLPENQD-----EWDN-LNIMFATAKGNI 649

Query: 623 --AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
             + +++  +I +N   GK  +++  ++K+  V     D H+ +  ++ K L F ++ +
Sbjct: 650 RRSDLLDFKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESL 705


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 359/603 (59%), Gaps = 57/603 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KKSAR+V
Sbjct: 11  VTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 131 SHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPEI+I++L+E+I GPDFPTG II   R  I+++YR GRG   VRA+  VE
Sbjct: 191 IKGCLALIDNPEITIDELMEHIPGPDFPTGAII-NGRAGILQAYRTGRGRIYVRAQAEVE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              + G   IV+ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D   V+    R
Sbjct: 250 TNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVVEIKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++  + ++  F +N+  L +   P+++ L  +L+ ++ HRREV+ RR+ +
Sbjct: 310 GEMGEVVLNNLYAQTQLQNVFGINIVAL-VDDQPKLLNLKELLEYFVKHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  +L+G  +A  NIDE+I +I++   P   +  M++R               
Sbjct: 369 LLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLDRAG 428

Query: 421 ------------FSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                       F L E+        QV AIL+LRL  L  +E  ++ +E +  L +   
Sbjct: 429 ENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQIAG 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L + ++  N     IRE  E+     D G  R T  + S  D     + +I +E  
Sbjct: 489 YLEILGNPERLMNV----IREELEVI--YNDYGDERRTVIQQSMTD--LTHEDLISEEDR 540

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V IS+ G+ +S         +   +  +A   K+ D ++  L A+T D +L  ++ GK 
Sbjct: 541 VVTISHGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKV 600

Query: 573 YTL 575
           + L
Sbjct: 601 FWL 603



 Score = 37.7 bits (86), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS----GRGHGEA 589
           +  SV L A+   EGD L        T  I+LL++ GKA      N+ S     RG    
Sbjct: 666 RPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSMGRVSRGV-RG 724

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +++  D++    ++   V +   K+L VS  G     E +E  A  R  +  + +   E+
Sbjct: 725 VRMADDVS----VIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSER 780

Query: 650 MKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
              +V  T    GD + ++     L+    D++    R  +GVRL   K+G
Sbjct: 781 NGCLVGATQVFEGDEIMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEG 831


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/611 (36%), Positives = 360/611 (58%), Gaps = 30/611 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E GL      +K A+IVG+V+G  HPH
Sbjct: 25  YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++AE +++ + +
Sbjct: 85  GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A  A IDN
Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI I++L +Y+ GPDFPTGG+I   R+ I ++++ GRG   VR ++ +E   +G   IV
Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327
            TE+PYQV  + L+ +I EL   K I  + ++ DE+++   +R+V+  K R     +++ 
Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  + +++ F +    L  GR P+ + L  ++K ++ HR +V+ RR+ F ++  + R 
Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381

Query: 388 EILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+ L++A  NIDE+I II   R+    K  ++ RF   + Q  AI++++L+ L  LE 
Sbjct: 382 HILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ EL  L      +  LL   ++    I  E  E+ E F      G  R T      
Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556
            ++  ++  +I+KE + ++IS+ G+I+ + + +           ++++  E D L     
Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----YDS 610
           A T D I+ ++  GKAY L    +   S    G  I+ L+ ++ +++I TA V    +D 
Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVVSLKEFDD 613

Query: 611 TCKLLVVSSKG 621
              LL+ ++ G
Sbjct: 614 KTYLLMATAGG 624


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++ + + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 406/741 (54%), Gaps = 50/741 (6%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQ+V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG-VDEDAVD 153
           YD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ ++    L G V E  VD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ PNL+ NG+SGIAVGMAT+IP HN+ E+ +  +AL+D P +S
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--GRGS---WCI 268
            E L + I GPDFPTG  I++++  I ++YR GRG   +R     EE+  G+G      I
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTK-GIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+PYQV K+  I KIA L+   RI  + DIRDES  +   V+    R   P L++  
Sbjct: 240 VVTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILND 299

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++ ++ ++T F   M  +  G+ P+ + L  IL+ +L  R   L R+ S  ++    R  
Sbjct: 300 LYKMTALQTNFGALMLAIEDGQ-PRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFH 358

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           I++GLLIA  ++D+II I+RN       K  M+  F L++ Q D+IL + LR L  LE+ 
Sbjct: 359 IVEGLLIALDSLDDIIDILRNAPDGTTAKVEMIEAFDLSDRQADSILAMPLRRLTGLEQQ 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +++ E D L     ++++L++        +  E+R +K+ F      G RR T  + + A
Sbjct: 419 KLRDESDELDERINQLETLVSDRNVLMKSLKKELRALKKKF------GDRRRTRIQ-TEA 471

Query: 506 DKATLQQAM------IEKEPITVVISNRGWIR----SLKSHSVDLSAL--HFKEGDSLKI 553
           ++   +Q +        +E   +  + +G++R      ++   D S      +E D + I
Sbjct: 472 ERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKTRTRRKDASGPTKALEEFDDVTI 531

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-----NHNQDIVTAFV 607
                + T+ +L+L+ +GKA+TL   ++   +   + + L+  L     +    +VT  V
Sbjct: 532 QTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIGLLPDAVGSTPDSVVTQIV 591

Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-LVVKVTGDHVAV 663
                   +L++V++KG    +  SE+   T +G T +K+  ++ +K   +   G  + +
Sbjct: 592 LSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKDDDLLKHAFIAPMGSDLVL 651

Query: 664 VGENRKLLIFSI--DQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                ++L F I  DQ+PEMSR     +G+RL   +      V C  +    T I  + +
Sbjct: 652 ASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSE----RLVGCIPVSPKDTLILVSNK 707

Query: 718 SYNRSENDLLGWLGKRGGVGS 738
            Y +           RGG+GS
Sbjct: 708 GYGKRILVSTFKTSNRGGIGS 728


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/631 (38%), Positives = 354/631 (56%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M E G ++   ++KS
Sbjct: 19  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++DGD+ AA RYTE+R
Sbjct: 79  ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 139 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALI++P +SI+ L + I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 199 LGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 257

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 258 VSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 317

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L  GR P +M L  +L  ++A R +V+ RR
Sbjct: 318 LRRDAVADVVLNQLYRFTPLQTNFGANMVALDAGR-PLLMNLKDLLTLFVAFREQVVTRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419
           + F +     R  IL GL IA  NIDEII +IR    P                   M++
Sbjct: 377 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRDWPAQDVAAMIT 436

Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                R  L E+        Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 437 LIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 496

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  VK  F+       RRT   E+   +     + +I++E + V +S+
Sbjct: 497 SRARVQTIIKDELAAVKAEFATP-----RRT---EIIEQEGEVEDEDLIQREDMVVTVSH 548

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      + +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 549 AGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 608

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            LP   L    G G+A+  ++ L   + I T
Sbjct: 609 RLP---LAPPNGRGKALINILPLEQGERINT 636


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/630 (37%), Positives = 366/630 (58%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +  + +IDN      + S+E++L+ I GPDFPTG  I+ +   I E+YR GRG 
Sbjct: 187 NLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGT-HGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D S  E 
Sbjct: 246 IRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHSNREG 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RI +  K +  + ++++  ++  + ++  F + M  L +   P++M L  +LK +LAH+
Sbjct: 306 MRICIDLK-KDANANVVLNQLYKHTQLQDTFGVIMLAL-INNQPKIMNLLEMLKHYLAHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            EV+ RR+ + +     R  IL+GLL A  NIDE+I IIR    P   K  ++ RF LTE
Sbjct: 364 EEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMERFGLTE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L       N +   +RE  EI
Sbjct: 424 VQAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAIL----ADRNLLLRVVRE--EI 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
              S   G  R T       D +   + +I K+   + ++  G+I        RS     
Sbjct: 478 LLISEKYGDDRRTQIGFDEFDIS--MEDLIPKQNTVITMTKLGYIKRMTVDNFRSQNRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +  +   E D ++  L   T   ++  +  GK Y L A  +  +GR   G AI  L+ 
Sbjct: 536 KGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAGRTARGTAIINLLQ 595

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621
           L   + I TA +    ++    L++V+ KG
Sbjct: 596 LAPGEKI-TAVIPLNKFEEGKYLMMVTKKG 624


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/650 (36%), Positives = 376/650 (57%), Gaps = 40/650 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRVPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L   +    P+V+ L  +LK +LA
Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKHYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L       N +   IRE  
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAIL----ADRNTLLRVIRE-- 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           EI + S   G  R T       D +   + MI +E   + ++  G+I        RS   
Sbjct: 480 EILAISEKYGDDRRTAIGFDAFDIS--MEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +  +   + D ++  +   T   ++  +  G+ Y L A  +  +GR   G AI  L
Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK 637
           + L   + I TA +    ++    L++ + KG   +V+++ I   AN RK
Sbjct: 598 LQLMPGERI-TAVIPISKFEEGQYLMMATRKG---LVKKTPIQDYANVRK 643


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 249/713 (34%), Positives = 403/713 (56%), Gaps = 55/713 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++++++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISYQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582
             +        D ++  +   T D +L  +  G+ Y                LP  NLL 
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLK 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
               GE IQ +I+    +    +F +  T K  +V         E SE     + G   L
Sbjct: 589 LE-DGETIQTIINARKEETAGKSFFF--TTKQGIVKR------TEVSEFNNIRQNGLRAL 639

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690
           K+   +++  V+  +G    ++G +    + F+   I  M R     +GV+L+
Sbjct: 640 KLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLR 692


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/714 (35%), Positives = 405/714 (56%), Gaps = 79/714 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIG 84
           ++  Y+ YA+S I  R++PD+RDG KPV RRI++ M  ++       +KKSARIVG+VIG
Sbjct: 17  MKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPYKKSARIVGDVIG 76

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VR+AQ FV RYPLI GQGNFG+IDGDS AA RYTE RMT++AE +L
Sbjct: 77  KYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYTEIRMTKIAEEML 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN++E+ +A L
Sbjct: 137 KDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIPPHNLKEVIKACL 196

Query: 205 ALIDNP---------------EISIE-------KLLEYIIGPDFPTGGIIVESRESIVES 242
            L+ N                ++S +       K++  +  PDFPTGGII+ S++ I + 
Sbjct: 197 YLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGGIIINSKD-IPKI 255

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR G G  +++A+    EV +    I++TE+PY V KS LI KIA+L  + +I  + DI+
Sbjct: 256 YRNGTGSIKIKAKI---EVNKDQ--IIITELPYMVNKSDLIIKIADLSKSNKIQGIADIK 310

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D+RIV+  + ++ DP++++  ++  + + T F  N   +   +  Q+  LD +L 
Sbjct: 311 DESTKDIRIVIKLRKKT-DPNIVLNQLYKYTQLTTTFSCNFVGIYKNKPYQLNILD-LLF 368

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVS 419
            +L+ R +++ RR+ F ++    ++  LKGL IA  NID  + II   +N       ++ 
Sbjct: 369 NFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTAKNTTDATQKLMK 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLE------EYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           ++ L + QV+ ILN+RL+ L  LE      EYQ   E  N+   KE    +LNS  +Q  
Sbjct: 429 KYKLDDIQVNEILNMRLQRLTSLEIEKLLNEYQETKE--NIQTYKE----ILNSYDKQIE 482

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E+ ++++ + K+     +R T  E    D +   + +I   P+ ++ ++ G+I+  
Sbjct: 483 LIINELHDLQKNYCKND----KRLTKLE--DEDISFDIKNLIPDNPVIIIYTDDGFIKKE 536

Query: 534 KSHSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGE 588
               V  +    + ++ DS K  ++     ++LL +  GK Y L   ++    SG   G 
Sbjct: 537 NISKVTKTGKTTNLQKNDSAKFIINTTNHKKLLLFTDTGKLYYLNVYDIPETGSGNSKGT 596

Query: 589 AIQLLIDLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEI--IANTRK 637
            I  LI LN N  IV             YD  C    ++ KG   +V+ + +    N++ 
Sbjct: 597 HISNLIKLNTNDKIVLIRTQIHENEYSNYDMVC----ITEKG---LVKRTSLEEYKNSKN 649

Query: 638 GKTFLKVSSEEKMKLVV---KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           G   LK++S++K+  V    K   +++ ++ +  K +IF+I+Q+  ++R  KGV
Sbjct: 650 GSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNINQVRTVARLAKGV 703


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 351/596 (58%), Gaps = 20/596 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G       KKSA
Sbjct: 9   IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGDS AA RYTEAR+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG SGIAVGMATSIP+HN+
Sbjct: 129 SKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATSIPTHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L+DNP+++  +L+  + GPDFPTG I++  +  I  +Y  GRG   VRA+ 
Sbjct: 189 GEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVM-GKSGIRRAYETGRGTVTVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+VTE+PY V K+RLIE+++EL+  KRI  +  IRDES  +   V    
Sbjct: 248 DIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLRVSIDV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ +++  + ++T F  NM  +  G+ P+ + L  IL  +L H+REV+ RR+
Sbjct: 308 RRDASASVILNNLYKQTLLQTSFSFNMLAIDHGK-PKTLNLKEILVAYLEHQREVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
           +F ++    R  IL+GL IA  +ID II+IIR+    D+ K  ++  +SL++ Q  AIL+
Sbjct: 367 AFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIESYSLSDKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I+ E   L A    +  +L    +    I  E+ ++++ F      G
Sbjct: 427 MRLVRLTGLERDKIEDEYRKLEALITDLKDILAHSARVDKIIYNELLDIQQKF------G 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545
             R T  +V        +  + E++ I  + SN G+I+ + +            +  ++ 
Sbjct: 481 DERRTELQVGDVTNIEDEDLIEEEDVIVTLTSN-GYIKRVPTAEFKAQNRGGRGVQGMNV 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            + D ++  +   T + +L  +  GK Y +    +     H + I ++  LN + D
Sbjct: 540 HDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPEYGRHAKGIPVVNLLNFDND 595


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 342/593 (57%), Gaps = 26/593 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+I ELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                  R T  E+   D   ++  +I  E + + IS   +++ +        K     +
Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
           +    K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I
Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPI 587


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 239/679 (35%), Positives = 374/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 QKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R 
Sbjct: 196 GEVIDACIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL+ L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKDELTSVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681


>gi|332978327|gb|EGK15053.1| DNA gyrase, A subunit [Psychrobacter sp. 1501(2011)]
          Length = 917

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/630 (36%), Positives = 351/630 (55%), Gaps = 79/630 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIIDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGGII   R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIY-GRAGIVDAYRTGKGRVHI 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLGQIWDS 418

Query: 409 -----------------------------NEDKPKPVMV----SRFSLTENQVDAILNLR 435
                                         ED   P  +    + + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLEAGDLRSVRPEYIEGEDFKNPFGLIDNGNNYRLSVEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLG 493
           L  L  LE  ++  E  +LL +  +++S+L    +    I  E+ E+ E F   + TD+ 
Sbjct: 479 LHRLTGLEHDKLTEEYQDLLRQIAELESILADFDKLMLVIKNEMLEILENFGDERRTDIV 538

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
             RT F   SR D       +I ++ + + +S  G+ ++         K      SA   
Sbjct: 539 DSRTDF---SRED-------LIPEQSVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAM 588

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           KE D +   +   T   +L  + +G+ ++L
Sbjct: 589 KEDDVIDHLVVTSTHATVLCFTDNGRVFSL 618


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|332299199|ref|YP_004441121.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
 gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/687 (35%), Positives = 390/687 (56%), Gaps = 29/687 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI++AM+E GL +    +K A +V
Sbjct: 15  VSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSGKTRKCATVV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD SVYD++VRL Q F  RY  I  QGNFG IDG  AAAYRYTEA+M+ V
Sbjct: 75  GDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYRYTEAKMSTV 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE ++  + ++ VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI
Sbjct: 135 AEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREI 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A  A IDNP++S+E+L   + GPDFPTGGII   R  I ++Y+ GRG   +R R+ +E
Sbjct: 195 CSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIF-GRRGIKQAYKTGRGKILIRGRFNIE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
              RG   I+ TEIPYQV+   L ++I EL   K I  +E + D SA +DVRIV+  K R
Sbjct: 254 VDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVRIVIELK-R 312

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++  +F  + +++ F +    L  GR P+++ L  +++ ++ HR+EV+ RR+ +
Sbjct: 313 GAIAKVVLNQLFSKTALQSSFGVINLALVKGR-PEILTLKDLIRYFVEHRQEVVTRRTRY 371

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+ L++A  NIDE+I II   R+    K  ++ RF   + Q  AI++++
Sbjct: 372 DLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMERFEFDDVQAQAIVDMQ 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE   ++ EL  L      +  LL   ++    I  E   ++E +      G  
Sbjct: 432 LKRLTNLEIEDLRRELAELETLIVHLKDLLAHPEKILALIKEETESLREKY------GDD 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA- 554
           R T       ++  ++  +I++E + ++ISN G+I+ +   +        K  +S K+  
Sbjct: 486 RRTDIVADEVEQINIED-LIKEEEMVILISNLGYIKRIPLTAYKAQGRGGKGSNSAKLVE 544

Query: 555 -------LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTA 605
                    A T D I+ ++ +GK+Y L    +  +GR   G  I+ L+ ++ N++I T 
Sbjct: 545 DDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSRGAHIKGLLTVSPNEEITTV 604

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
                +     L + ++ G    V+ S+      +G   +++   +K+   +   G D +
Sbjct: 605 VSLKEFSDEQYLFMATAAGVVKKVQTSQFSNAKTRGIIAIRLDEGDKLVTAILSGGTDEL 664

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGV 687
            ++    + L  +   +  M R G+GV
Sbjct: 665 ILISRRGQALRITETSVRPMGRAGRGV 691


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSA
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP HN+
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG   +RA+
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
              EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  E +RI++ 
Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +PD+++  ++  + +++ F +N+  L+   +P ++ L  I+K ++  +  V+ +
Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQVSVIIK 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431
           RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E Q  AI
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNKYNFDEEQNKAI 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F  +  
Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDN-- 495

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544
              RRT   +    +     + +I      +++S  G+IR +      +        +++
Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602
            +  D + IA      D +L  +  GK Y     N+ S       + ++  LN   ++D 
Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610

Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +TA +     K     L  V+ KG     + SE     R GK  + +   +++  V   T
Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATT 670

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710
           G D V +  E+ K++      +   SR G GVR    +D     G IS    FK+   +T
Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVRALKLEDDDVVVGAIS---SFKLTH-IT 726

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + + G       +D    +  R G G  V     R+GKF
Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 313/493 (63%), Gaps = 15/493 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEI-----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN  +      IE+LL  + GPDFPTG +I+ +   I E+YR GRG 
Sbjct: 187 NLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGT-TGINEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+RDES    
Sbjct: 246 IRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + M+  F + M  L +   P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLAL-VDNQPKVLNLQEMLGYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++ RFSLT+ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIERFSLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+    ++ ++L   K+    I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAILADEKKLLGVIREEILLIAEKY 484

Query: 487 SKSTDLGRRRTTF 499
                   RRT+ 
Sbjct: 485 GDE-----RRTSI 492


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/700 (33%), Positives = 383/700 (54%), Gaps = 43/700 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 137 TQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +++   +LQG+ E  VDF   ++   +EP V P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALID P++S E+LL +I GPDFPTGG IV+  + I E+Y  GRG   +R  
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDG-QGIREAYLTGRGSITLRGV 261

Query: 256 WCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              EE+  GRG      ++++E PYQV K+  +EK+AEL+   R+  + D+RDES     
Sbjct: 262 ARFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGM 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P  +++ ++ L+ +++ F + +  L  G+ PQ + L  IL+ +L  R  
Sbjct: 322 RVVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGK-PQQLSLKQILQHFLQFREA 380

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
            L R     +Q + R+ E + G+++A  +++ +I ++R   +    K  + +R   T  Q
Sbjct: 381 TLKRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQ 440

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL + LR L  LE  ++  E   L A   ++  LL   ++  N +  E+R +K+ F+
Sbjct: 441 AETILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFA 500

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSL-----KSHSVD 539
                  RRT     S  +    Q       E     + ++ +G++R L     +S S  
Sbjct: 501 DP-----RRTQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRS-- 553

Query: 540 LSALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            +    + G+   ++L   T ++ IL+L+  G+A+T+P   +    G    + L+  L +
Sbjct: 554 -NPAQRELGEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPN 612

Query: 599 NQDIVTAFVYDST-----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            + IV AF  D               L+V+S +G    V  +E++  +++G   LK+   
Sbjct: 613 PEPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEG 672

Query: 648 EKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSR 683
           +++         H    V +     ++L    +QIP M R
Sbjct: 673 DELGWAALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGR 712


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 356/620 (57%), Gaps = 67/620 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  P+ +I++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ +
Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRNWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++++  E +  +L+  ++    I  E++++K  F +S  +G RR+T  E S  D +T  +
Sbjct: 488 DVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSK-VGARRST-VEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        RS K       A   KE D +     A+T D +L
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603

Query: 565 LLSTDGKAYTL-----PAGN 579
             S  G+ Y L     PAG+
Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 259/738 (35%), Positives = 396/738 (53%), Gaps = 74/738 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVRDMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   I  LL+   +     A  + E+  I S   + G  R +  E +  +  T  + 
Sbjct: 488 VMAQ---IADLLDILARPERITAIIVEELTLIRS---EFGDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678
           G       +E  +N RK         E    +   +T G H V +  +  K + F  + +
Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 679 PEMSR-GKGVRLQSYKDG 695
             M R  +GVR  + +DG
Sbjct: 719 RPMGRQARGVRGMNLEDG 736


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 367/616 (59%), Gaps = 27/616 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+ N+  VS+  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++    +       +
Sbjct: 9   VDNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDKPY 68

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGD+AAA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGDNAAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +A  +++ +D+  VD  D Y+  + EP V P+K+PNLL NG  GIAVG+AT+IP
Sbjct: 129 EARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIAVGLATNIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +A ID  +I  ++L+EYI GPD PTGGII+  ++S++ +Y  G G   +
Sbjct: 189 PHNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIII-GKKSLLSAYETGEGRVTL 247

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII----AKRIPLLEDIRDESAED 308
           RA+  +E +  G   IV+TE PY+  K++L++ I+E+      AK +  + DIRDES   
Sbjct: 248 RAKTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISDIRDESDRT 307

Query: 309 -VRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            VR V+  K  S +   D +++ +F  +DM+     NM  L+ G+ PQ M L  IL  ++
Sbjct: 308 GVRAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGK-PQTMGLKTILYHYI 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   M+   +R  I++G + A   +DEII +IR+    K     ++  F 
Sbjct: 367 EHQKDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAGKNLIEGFG 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q +AIL L L  L  LE    + E   L  E ++++ +L+S K+    I  E+ E+
Sbjct: 427 FTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIKRLNKILSSEKELLKIIKKELTEI 486

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537
           +E +  +     R+TT  E     K  L++ ++E E I + +SN G+I+   LK++   +
Sbjct: 487 REKYGDN-----RKTTIVENDDEAKINLEELIVE-EDIVITMSNEGFIKRIPLKTYNRIN 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
            ++  + ++EGD  K  ++++T   ++  +  G  Y     N+     +  GE I+ +I 
Sbjct: 541 AEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKGERIESIIK 600

Query: 596 -LNHNQDIVTAFVYDS 610
            L+ +Q+ + A VY +
Sbjct: 601 TLDVSQESIVA-VYSA 615


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 361/634 (56%), Gaps = 38/634 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      
Sbjct: 15  IIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERG 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RY
Sbjct: 75  FYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+I
Sbjct: 135 TECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A   ++NPE S E+LL    E I GPDFPTG ++V  R+ I E+YR GR
Sbjct: 195 PPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV-GRKGIEEAYRTGR 253

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++ 
Sbjct: 254 GSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSS 312

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+V+  K R     +++ +++  +D+++ F  NM  L  G VP+ + LD  ++ W+
Sbjct: 313 RTGQRLVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWV 370

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
           AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    
Sbjct: 371 AHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLMELLE 430

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  +
Sbjct: 431 IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAI 490

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R T       D +   + +I +E I V +S  G+++  ++ +VD  A
Sbjct: 491 VEKY------GDDRKTMLVPYDGDMSI--EDLIAEEDIVVTVSRGGYVK--RTKAVDYRA 540

Query: 543 ----------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAI 590
                        KE D +     + T   +L  +  G+ Y   A  L  +GR   G+ +
Sbjct: 541 QKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHV 600

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             L+    ++ I        YD+   L++ +  G
Sbjct: 601 ANLLAFQPDEAIAEILAIRDYDAAPYLVLATKAG 634


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/622 (38%), Positives = 366/622 (58%), Gaps = 49/622 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +   +  A+KKSAR+V
Sbjct: 11  VDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVRMSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  ++++ V+F   Y+  +  P + PSK PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR-WCV 258
            +  LA I +  I++ +L+++I GPDFPT GII   ++ I E+YR G+G   +RAR    
Sbjct: 191 IDGCLAYIKDDNITLRELIQHIPGPDFPTAGII-NGKKGIEEAYRTGKGKIYIRARNKIE 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           +        I+  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D +RIV+  K 
Sbjct: 250 KNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVEIKK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++  ++++  ++ L+ ++  F +NM  L  G+ P+ + L  ILK +L+HR E++ RRS 
Sbjct: 310 EAMS-EIILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKHFLSHREEIVTRRSI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR-------------- 420
           F +    +R  IL+GL IA +NI+ II +I+      + K +++ +              
Sbjct: 368 FELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKINQKD 427

Query: 421 --FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             +  TE QV AIL+LRL  L  LE+ ++  E D L  + +++  +L S  +    I  E
Sbjct: 428 HDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSRDRMREVIRDE 487

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------- 531
           +  +K  F       +RRT   E++  +     + +I +E + V +S+ G+++       
Sbjct: 488 LVSIKNNFG-----DQRRT---EITENNPDISIEDLINQEDVVVTLSHSGYVKYQPLSDY 539

Query: 532 -SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
            + K      SA   KE D ++  +  +T D IL  S+ G     K Y LP     S   
Sbjct: 540 NAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPES---SRHA 596

Query: 586 HGEAIQLLIDLNHNQDIVTAFV 607
            G  I  L+ L+ N++ +TA +
Sbjct: 597 KGRPIVNLLPLS-NKERITAIL 617


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 252/723 (34%), Positives = 402/723 (55%), Gaps = 61/723 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D +R+V+  K R   P +++ +++  + +++ F  NM  L +   P+++ L   L+ +
Sbjct: 301 DRDGIRVVIELK-RDAYPRVVLNNLYKQTPLQSNFGANMLAL-VDNEPRLLTLREFLRVF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L  R EV+ RR+ + ++  + R  +L+GLLIA  ++D +IA+IR   +    K  +V  F
Sbjct: 359 LDFRVEVITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQ 471
            L+E Q DAIL ++LR L  LE  +I+ E          L ++LA+KE+IDS++    QQ
Sbjct: 419 GLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQ 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I    R         + + +R     E++  D    +QA+I       +++ +G+I+
Sbjct: 479 IKTIHATPRR--------SHIEQRE---GEIAETDLIANEQALI-------LVTEQGYIK 520

Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +  ++ +         +    KE D +   +     D +L  +  G  Y+L A ++ +G
Sbjct: 521 RMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTG 580

Query: 584 R--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+++   + I +      +     L++++ KG  FI + +    +  + 
Sbjct: 581 SRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKG--FIKKTALAAFSNIRS 638

Query: 639 KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSY 692
              + +S E  ++++ V     +   ++G  + + I F  D  Q+  + R  KGV+    
Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698

Query: 693 KDG 695
           + G
Sbjct: 699 RSG 701


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/732 (33%), Positives = 403/732 (55%), Gaps = 76/732 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------AKRIP-----LLED 300
           +R++    E+      +++ EIP+ ++K+ LI+KIA+L        A+R        L++
Sbjct: 256 LRSKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQN 312

Query: 301 IRDES--AEDVRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           IRDES   E +R+++  K  S + DL  ++ +++  + ++  F +N+ +L  G+ PQ++ 
Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQLLG 371

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+ +
Sbjct: 372 IGAIIRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  I 
Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K  F    DL +   T   +++  K       I KE I + ++   +I ++   
Sbjct: 492 KELIEIKNEF--KNDLRKTLITPKGIAKITKWD----CIPKEDIILKVTQNNYIAAIPLD 545

Query: 537 SVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA---------- 577
            +DL         S+  FK GD     L + + D + + +   + + L A          
Sbjct: 546 KIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605

Query: 578 --------GNLLSGRGHGEAIQLLIDLNHNQ----------DIVTAFVYDSTCKLLVVSS 619
                    NL+   G  E    +I L+  +          D++ A  +    K+     
Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYK- 664

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
               F +E+       + GKT +++S  +++K V+K+  D   ++  ++  +I     I 
Sbjct: 665 ----FFLEKK-----WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSIL 715

Query: 680 EMSRGK---GVR 688
           E  R +   GVR
Sbjct: 716 EAKRTRKTFGVR 727


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/699 (34%), Positives = 400/699 (57%), Gaps = 48/699 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMG+     ++K ARIVG+V+GK
Sbjct: 11  LKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVGDVLGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+ ++AE +L 
Sbjct: 71  YHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIAEEMLS 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   ++    EP V P+K PNLL NG SGIAVGMAT++P HN++E+C+A +A
Sbjct: 131 DIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVCDAIIA 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + NP+I++ +L++Y+  PDFPTGG+IV  R+ ++++Y  G+G   VR R  +E     +
Sbjct: 191 YLQNPDITVRELMKYVKAPDFPTGGVIV-GRKGLIDAYETGKGKITVRGRVEIE-----N 244

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++ EIPY V K+RL+EKIAELI + ++   + +RDES  E +RIV+  +    D + 
Sbjct: 245 NTIIIREIPYMVNKARLVEKIAELINSGKLE-AKTVRDESDREGIRIVVEVRE---DINT 300

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            ++ ++  ++++T F + +N+  +   P+++ L  +++ ++ HRR V+ RR+ + ++   
Sbjct: 301 ALKKLYAYTNLQTTFGI-INLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKKAK 359

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+ I++GL  A  +ID +I +I++   P   K  ++ R+ L+E Q DAIL  RL+ L  
Sbjct: 360 ERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMERYELSEVQADAILQTRLQKLTA 419

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E   +  E + L+ + ++ + +L S ++    IA E+ E+KE +        RRT   E
Sbjct: 420 MEIDALMKEYEELIQKIKEYEEILASPQRIDAIIASELEEIKEKYGDE-----RRT---E 471

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH----------FKEGDSL 551
           +   D     + ++  E   ++++  G+++ +   S+     H           +  D  
Sbjct: 472 IVEEDGEISAEELVSFEENILIVTKNGFVKRM---SIGFKTQHRGGVGVIGIGMRGDDEP 528

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYD 609
            I +  ++ D++L+  T  KAY L A  +      G G  I++ + +   + IV    + 
Sbjct: 529 AIIVKCNSRDKLLVF-TASKAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPFQ 587

Query: 610 S-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           +    +L+++  G       SE     R G     V+S  K+     + G  V +   N 
Sbjct: 588 NFEGDILILTEDGYIKRTPLSEFENAKRAG----IVASGGKIAFARHLDGKEVFIATTNG 643

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + F  + +PE  R  KGV+  S + G   D I +  C
Sbjct: 644 YAVRFKAEDVPEYGRSAKGVKAISLRQG---DSIAWLSC 679


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 355/641 (55%), Gaps = 41/641 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E  YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VGE
Sbjct: 86  LRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFRKCARVVGE 145

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD +VYD+LVRLAQ F  R  L+ G GNFG++D D  AA RYTE R+  VA 
Sbjct: 146 VLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTECRLQAVAS 205

Query: 142 -LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            ++L  ++ D VDF   ++    EP V P++ PNLL NGTSGIAVG+AT IP HN++E+ 
Sbjct: 206 AMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIPPHNMREVV 265

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR----ESIVESYRLGRGGFRVRARW 256
           E   ALI NP+I++ +L+ +I  PDFPTG +         +++ ++Y  G+GG  +RA+ 
Sbjct: 266 EGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKGGILMRAKI 325

Query: 257 CVEE---VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +E+    G G   +V+TE+PYQ  KS L+E+IA L+ A  +  + DIRDES  D VR+V
Sbjct: 326 HIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDESDRDGVRVV 385

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + DL++  +   + +++RF  NM  L +G  P  + L   L+ +L+ R EV+
Sbjct: 386 VEVK-RGGNADLVLNQLLKHTAVQSRFSANMVAL-VGATPLTLTLKNFLQHFLSFRCEVV 443

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----SRFSLTENQV 428
            RR+   +    +R+ ++ G + A  ++D ++  IR        +V    S F L+  Q 
Sbjct: 444 ERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAALVVLRASPFGLSREQA 503

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + LR L  LE  +++ E   L A+   +  LL    +    +  E  E+   F  
Sbjct: 504 EGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQDRILQVVTSEAEELAAKFGT 563

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDL 540
                 RRT    ++  +     + +I   P  VV S RG+I+ ++  +        V  
Sbjct: 564 P-----RRTHI--ITDGEVELRHEDVIPNAPSLVVYSRRGYIKRVRPDTFGAQKRGGVGK 616

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
           +    KE DSL   ++ +  D +L  +T+G+AY+L A ++  G     G A+  ++  + 
Sbjct: 617 AGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDK 676

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           +  I           ++ VS  G A    E +++  TRKG+
Sbjct: 677 STRI---------AAMVPVSGFGAALGSAEQDVVMLTRKGQ 708


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/678 (35%), Positives = 390/678 (57%), Gaps = 42/678 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV P+++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRVPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L   +    P+V+ L  +LK +LA
Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKYYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L       N +   IRE  
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAIL----ADRNTLLRVIRE-- 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           EI + S   G  R T       D +   + MI +E   + ++  G+I        RS   
Sbjct: 480 EILAISEKYGDDRRTAIGFDAYDIS--MEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +  +   + D ++  +   T   ++  +  G+ Y L A  +  +GR   G AI  L
Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646
           + L   + I TA +    ++    L++ + KG   +V+++ I   AN RK G   + +  
Sbjct: 598 LQLMPGERI-TAVIPISKFEEGHYLMMATRKG---LVKKTPIQDYANVRKIGLAAISLRD 653

Query: 647 EEKMKLVVKVTGDHVAVV 664
           ++++ + VK T D   V+
Sbjct: 654 DDEL-IEVKATNDKKDVI 670


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/630 (37%), Positives = 365/630 (57%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L +   P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR      + K  ++ RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEI 485
           Q  AI+++RLR+L  LE    + +L N   E EK  + L       N++   I+ E++ I
Sbjct: 425 QAQAIVDMRLRALTGLE----REKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
             K  D  R +  + E   +      + +I  E + V I+N G+I+ + S +        
Sbjct: 481 SDKYGDDRRTKIGYDEFDMS-----AEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGG 535

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +  +   + D ++  L   T   ++  +  G+ Y L A  +  +GR   G AI  LI 
Sbjct: 536 KGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQ 595

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621
           L   + I TA V    +D    L + +  G
Sbjct: 596 LQPGEKI-TATVPMKEFDEDKFLFMATKNG 624


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536
           ++ F       +RRT   +++ ++  T++ + +IE++ + + +S++G+++ +     K+ 
Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           +     +  +  ++GD ++  L++ T D +   +  GK Y                LP  
Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           NLL     GE IQ +++L    D   AF
Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/580 (38%), Positives = 353/580 (60%), Gaps = 26/580 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNF ++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ E VR
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  + R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++E
Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q
Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++
Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477

Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537
                  RRT     EV     +   + +IE+E + + +SN+G+I+ L        K   
Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             +        D ++  +   T D +L  +  G+ Y L A
Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/752 (33%), Positives = 415/752 (55%), Gaps = 42/752 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++E YL YA+S I  RA+PD+RDG KPVHRR++HAM+E        + KSA+IV
Sbjct: 38  VEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSAKIV 97

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIG  HPHGD +VY+++VR+AQ F  R  LI GQGNFG++DGD+AAAYRYTEAR+T++
Sbjct: 98  GEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARLTKL 157

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   +++   +P V P+ FPN+L NG++GIAVGMAT+IP HN++E 
Sbjct: 158 AEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNLKEA 217

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +ALI NP+I++ +L++ + GPDFPT G  +   E + ++Y  G+G  R+R++  + 
Sbjct: 218 VNAVIALIQNPDITLPELMKILPGPDFPT-GGTIIGGEGLYQAYATGKGSIRIRSKVDII 276

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E  +G   IV+ EIPYQV K  ++EKI +L+  K I  + +I D S  + +R+ +  K +
Sbjct: 277 ENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVK-K 335

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  +++  +F L+ ++  + + M  +   R P++  L  ILK +  HRREV+ +R+ F
Sbjct: 336 DANAQVILNQLFKLTQLQVSYGITMLAILDNR-PKIFSLKEILKSYAEHRREVVVKRTEF 394

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            +    +R  IL+GL IA  NIDE+I IIR      + +  +++ FSL+E Q DAIL +R
Sbjct: 395 DLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAILEMR 454

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I  EL+ +      ++ +L S   +   I C+     E+   S   G  
Sbjct: 455 LQRLTSLEVQKIIDELEQVRILIADLEDIL-SKPDRVKSIICD-----ELGKVSQSFGNT 508

Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546
           RTT   +   + +T   + +I  E + V +S   +I+ L        K     +  +  K
Sbjct: 509 RTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTK 568

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
             D +K    A T D ++L S  G+A+ L    L   +    G++++ +I+LN ++ I +
Sbjct: 569 REDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEIITS 628

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
            F + +     LL+V+ +G    ++  E     + G   + +   +++  V+    ++  
Sbjct: 629 LFTFRNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDV 688

Query: 663 VVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +G    L I  +++++    R   GV     +D    D I      G+T ++     + 
Sbjct: 689 FIGSKNGLAIRMNLNELRSQGRTASGVTAMKLED---DDSIA-----GITKVEPNTNLFC 740

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            SEN      GKR        KG  R GK ++
Sbjct: 741 ISEN----GFGKRTDFEEFSTKG--RGGKGMT 766


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/631 (36%), Positives = 369/631 (58%), Gaps = 32/631 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + +  A+ E YL YA    K+RA+PD+RDG KPVHRRI++   ++       + 
Sbjct: 11  DNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGAYKLAAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +L+ +D+D V+  D Y+  + EP V PS++PNLL NG  GIAVG+AT+IP 
Sbjct: 131 ARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN EI  ++L++YI GPD PTGGI++  + S++++Y  G G   +R
Sbjct: 191 HNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILI-GKNSLLKAYENGIGKVSLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +EE+ +G + IV+TE PY+  KS+L++ I+E+   KR    +  + DIRDES  + 
Sbjct: 250 AKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYISDIRDESDRNG 309

Query: 309 VRIVLFPKNRSLDPDLLMESIFML---SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K RS D +++ +++  L   +DM+     NM  L+ G+ P+VM L  ++  ++
Sbjct: 310 IRAVIEFK-RSTDREIVEKTLKYLYKNTDMQINISFNMVALANGK-PEVMGLKTMIYHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++EV+ RRS   ++  + R  I++G + A   +DEII  IR     K     ++ +F+
Sbjct: 368 EHQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEASKNLIDKFN 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    K E   L  + + +  +L   ++    I  E+ EV
Sbjct: 428 FTKVQSEAILELMLYRLTGLEVTSFKKEHKELEKKIKALKKILQHEEELLKVIKFELEEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537
           +E +       +R+T   +     K  ++  +I++E + + IS  G+ +  S+KS+   +
Sbjct: 488 REKYG-----DKRKTLIIKDDEKAKIDIEDLIIDEETV-ITISKEGFCKRVSVKSYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL----- 592
            D+  + ++EGD  K  L   T D +L+ +  G  Y+    N+   R     I+L     
Sbjct: 542 SDIEDIEYREGDYNKFLLEGSTKDNVLIFTNKGNMYSTKVINIPEKRWKDRGIRLDETIK 601

Query: 593 LIDLNHNQ--DIVTAFVYDSTCKLLVVSSKG 621
            IDLN  +  DI     + +    + ++S+G
Sbjct: 602 TIDLNEEEIIDIYVVSKFTTQNDFIFITSRG 632


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/744 (34%), Positives = 403/744 (54%), Gaps = 63/744 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + ++ ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVEAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421
           R+ + +     +  IL GL IA  NIDEII II+  + P    + VM  ++         
Sbjct: 365 RTVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLV 424

Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  A+L +RL+ L  +E+ +++ +L  L  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++    +  E+ +VKE F+        R T  E    DK    + +I++E + V ++ 
Sbjct: 485 SRERLLKILKEELIKVKEEFATP------RLTSIEFGEFDKDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS K      S L  ++ D         T   +L  S  GK Y+L   
Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   + +++
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLD 656

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKG 686
             +I +N   GK  +++  ++K+  V     D H+ +  +  K L F ++ +  +     
Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTS 713

Query: 687 VRLQSYKDGGISDVICFKICEGLT 710
             ++  K  G   VI   + +G++
Sbjct: 714 DGVRGMKLAGDDSVISMTVLKGIS 737


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 379/674 (56%), Gaps = 38/674 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE +L+ + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L +   P+VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDANANVILNQLYKHTQMQDTFGVIMLAL-VNNEPRVMNLLDMLNHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  +++ F LTE 
Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLIAAFDLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +++ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEIIVIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---V 538
                 G  R T       D +   + +I +E + + ++  G+I+     + KS +    
Sbjct: 485 ------GDERRTAIGFDEYDIS--MEDLIPREDVVITMTKLGYIKRMTVDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      T   ++  +  G+ Y L A  +  +GR   G AI  L+ L
Sbjct: 537 GIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650
              + I TA +    Y     L + + KG   +V+++ I   AN RK         EE  
Sbjct: 597 MPEEKI-TAIIPIKEYVQGEYLFMATKKG---LVKKTPITDYANVRKTGLAAITLREEDE 652

Query: 651 KLVVKVTGDHVAVV 664
            + VK T +   ++
Sbjct: 653 LIEVKATDNEKDII 666


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +K
Sbjct: 7   DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTE
Sbjct: 67  KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAVGM T+IP 
Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ G+G   VR
Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES +    + 
Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ ++F  + +++ F +NM  +  G  P V+ L  IL+ +LAH+  ++ 
Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF L + Q  A
Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++++ F    
Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
               RRT   E+S ++  ++  + +IEK+ + + +++ G+I+ + +    +         
Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586
            +  +  D +   ++ +T D +L  +  GK Y+               LP  NL+     
Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           GE +Q ++ +  N         D+   L+ V+  G    +  SE     R G   L +  
Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646

Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688
            +++  V+   G    ++G      +IF+ +++  M R   GVR
Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690


>gi|332885150|gb|EGK05401.1| DNA gyrase, A subunit [Dysgonomonas mossii DSM 22836]
          Length = 866

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/717 (33%), Positives = 412/717 (57%), Gaps = 44/717 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ MSE+G       
Sbjct: 4   TEDRIIRINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMSELGNTSNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGDS AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A +A ID+ +I  + L++YI  PDFP+GG I    + + +++  GRG   +
Sbjct: 184 PHNMTESIDAIVAYIDDRDIDTDGLMQYIKAPDFPSGGFIY-GYQGVRDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           R R  +E  G     IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES  + +RI
Sbjct: 243 RGRAEIETEG-NHEKIVITEIPYLVNKAELIKHIADLVGEKRLDGISNVNDESDRQGMRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  + ++++  ++ L+ +++ F +N   L  GR P+ + L  ++  ++ HR +V
Sbjct: 302 VVDIK-RDANANVVLNKLYKLTALQSSFSVNNIALVKGR-PRTLNLKDMISLFVEHRIDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+++ ++  + R  IL+GL+IA  NIDE+IA+IR    P+     +++RFSLTE Q 
Sbjct: 360 VIRRTTYDLRKAEERAHILEGLIIASDNIDEVIALIRASKSPQEAIESLMNRFSLTEIQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  LE+ ++++E D +      ++ +L++   +   I  E+ E+K  +  
Sbjct: 420 RAIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILSNEDLRMQVIKDELIEIKNKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
           +     RRT   E+  A +    +     + + + +S+ G+I        R+     V  
Sbjct: 480 A-----RRT---EIVYASEELNPEDFYANDEMIITVSHFGYIKRTPLTEFRAQNRGGVGA 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + ILL +  GK + L   ++  G     G AIQ L+++  
Sbjct: 532 KGSETRDADFIEHIYPASMHNYILLFTQKGKCFWLRVFDIPEGSKNSKGRAIQNLLNI-E 590

Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646
           + D VTAF+         Y ++  L+  +  G   +++++ + A +R    G   + +  
Sbjct: 591 SDDKVTAFIRVRGFSDTDYINSHYLVFCTQAG---VIKKTRLEAYSRPRQNGVNAITIRE 647

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           ++++  V+   GD  + +   N + + F    + EM R   GVR     + G  +VI
Sbjct: 648 DDRVIEVLMTDGDSEILIANRNGRAIRFHESDVREMGRTATGVRGMRIDEDGQDEVI 704


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R 
Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 354/620 (57%), Gaps = 67/620 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L ++ NPE SI++L+E +  PDFPTGGII      + + YR GRG   +RA+   E
Sbjct: 191 VDACLHMLKNPEASIDELMEIVPAPDFPTGGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L+HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIQVFLSHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 TLRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMLRPWDSSLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++AE + +  +L   ++    I  E+  +K  F + T LG RR+   E S  D +T  +
Sbjct: 488 EVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQ-TKLGARRSQI-EHSSFDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTL-----PAGN 579
             S  G+ Y L     PAG+
Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 258/766 (33%), Positives = 421/766 (54%), Gaps = 50/766 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L     +KKSA
Sbjct: 27  VDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  AA RYTEARM
Sbjct: 87  ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEARM 146

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+GMAT++P HN+
Sbjct: 147 TRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPHNL 206

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A +  ID+ +  I+ L+ Y+ GPDFPT GII   +E I E+Y  G+G  ++RAR 
Sbjct: 207 KEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314
            VEE  R    IVV E+PY V K+ L EKIA+L+   +I  + DIRDES+    +R+++ 
Sbjct: 266 EVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLIIE 325

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  ++  +D+ET F + +N+  +   P+V+ L  ++K ++ HR EV+ +
Sbjct: 326 LK-KGVATQIVLNQLWKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +     +  IL+GLLIA  NI+E+I IIR   N D  +  +++RF L+E Q  AI
Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQAI 443

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS---K 488
           L++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++++ E +    +
Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRR 503

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
           S  +G  +T   E+   D       +I  E + V I+ +G+I+ + + S           
Sbjct: 504 SEIIG--KTNDTEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGV 554

Query: 546 ----KEGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
                +G+     L   +T   L + TD GKA+ +    +  LS    G++I+ +++L  
Sbjct: 555 QGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAP 614

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I + F    +D    +++V+  G    +E   +    ++G   L + + +++  V  
Sbjct: 615 EEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSP 674

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---ICEGLT 710
           V TGD   +       L  + ++I +M R   GV+  S  D    D IC     I +G +
Sbjct: 675 VQTGDDFIMTTAAGLALRITEEKIRKMGRAAAGVKGISLDD----DDICVSGNAIHKGES 730

Query: 711 WI----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I    +  G+  +  + ++ G    RGG G +  K   ++G  +S
Sbjct: 731 LIVITENGIGKRLSSKQFNVKG----RGGKGQIYIKPDNKTGNVVS 772


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 262/763 (34%), Positives = 419/763 (54%), Gaps = 48/763 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 5   QERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R+PLI+G GNFG+ID D  AA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +    +LQ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT+IP
Sbjct: 125 SRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNP ++  +L+EYI GPDFPTG  I+ SR  I E+Y  GRG   +
Sbjct: 185 PHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSR-GIREAYATGRGSVTM 243

Query: 253 RARWCVE-EVGRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +  RG      I++TE+PYQ  K+ LIEKIA+++   R+  + D+RDES  D
Sbjct: 244 RGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRD 303

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  K R   P +++ +++  + ++  F +NM  L +   PQ++ L   L+ +L  
Sbjct: 304 GMRIVIELK-RDAYPKVVLNNLYKQTPLQNNFGVNMLGL-VNSEPQLLSLLDFLQVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R E + RR+ + ++    R  +L+G LIA  N+D +IA+IR   +    K  ++  +  +
Sbjct: 362 RIETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIESYGFS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E + L  +   ++ +L +  +    I  E+ +++ 
Sbjct: 422 ATQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDILANRDRILAIIKEEVIQIRN 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ-AMIEKEPITVVISNRGWIRSLKSHSVDL--- 540
            ++       RRT      +AD+  L   ++I  E + ++++ +G+I+ +   + +    
Sbjct: 482 AYAN-----ERRTLI----KADENDLSDISLIANEQVAILVTEQGYIKRMLVDTFEAQNR 532

Query: 541 -----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRGHGEAIQ 591
                S    K+ D ++  +   + D +L  S  G AY+L A  +     + +G+     
Sbjct: 533 ATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESSRTAKGYPLVQM 592

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EK 649
           L I        V      S    LV+ ++G  FI + +    N  +    + +S E  ++
Sbjct: 593 LPIPKEEKVTSVIGVSEFSEDDYLVMLTQG-GFIKKTALSAFNRIRTNGLIAISLEDGDE 651

Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQSYKDGG--IS-DVIC 702
           ++ V   T D   ++G  R + I F  D  Q+  + R  KGV+  S ++G   IS D++ 
Sbjct: 652 LRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKSMSLREGDQLISMDILP 711

Query: 703 FKICEGLT-WIDSAGRSYNRSENDLLG-W--LGKRGGVGSLVP 741
            ++ E +   ID +    +   N   G W  +   GG+G  VP
Sbjct: 712 SQVVEEVEGAIDDSDEDADELANADQGPWVLVVSSGGLGKRVP 754


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R 
Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIV
Sbjct: 10  INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR++++
Sbjct: 70  GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+
Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +R +  +
Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES    +RIV+  K 
Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +  +++  ++ L+ +++ F +N   L  GR P+++ L  ++K ++ HR EV+ RR+ 
Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL+IA  NIDE+IAII++   P+     ++ RFSL+E Q  AI+ +
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F      G 
Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  ++  A +    +     + + + +S+ G+I        R+     V       +
Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  + D V 
Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596

Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651
           AF+          + ++  LL  + KG   +++++ + A +R    G   + +  ++ + 
Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706
            V    G++ V +   N + + F    +  M R     KG+ L       +  +IC K  
Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/578 (38%), Positives = 334/578 (57%), Gaps = 26/578 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM+E+GL     F+
Sbjct: 5   ESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTE 124

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+T + ++ +L+ +D + VDF D ++    EP+V PS+ P +L NG+SGIAVGMAT+IP
Sbjct: 125 CRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ E  +ALI NPEI+  +L++YI GPDFPTG  I+  + SI E+Y  GRG   +
Sbjct: 185 PHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQIL-GKASIREAYTTGRGSITM 243

Query: 253 RARWCVEEV---GR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  D
Sbjct: 244 RGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L  R
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQLLSLKQFLSVFLDFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  +L+GLLIA  N+D II +IR   +    K  ++  + L+E
Sbjct: 363 IETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELIDTYGLSE 422

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  E + LL +   +  +L   ++    I  E+ E+K  
Sbjct: 423 VQSDAILQMQLRRLTALEAQKITQEHEELLEKIADLLDILAKRERILEIIQTEVAEIKLK 482

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540
           F+       RRT    +  A+    +  +I  E   ++++ +G+I+ +   + +      
Sbjct: 483 FASP-----RRTI---IEHAEGEIDETDLIANEQAIILLTEQGYIKRMPVSTFEAQSRAT 534

Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              +    KE D ++  L     D +L  S  G  Y L
Sbjct: 535 RGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCL 572


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/584 (40%), Positives = 357/584 (61%), Gaps = 30/584 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL +   + K A +V
Sbjct: 28  VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGVV 87

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ ++
Sbjct: 88  GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLERL 147

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D+D VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 148 SDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ LI+NP+ ++  L+ +I GPDFPT GII   R+ I  +Y  GRG  +VRAR  VE
Sbjct: 208 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGII-RGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
                    IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ E +RIV+  K 
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            +L   +++ +++  + M+  F + M  +  G+ P+V+ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 327 DAL-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRVLTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I   ++ D  +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K     I  E+REVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  +    D +T  + +I +E + V +S+ G++        R+ K      +    +
Sbjct: 500 -RRTEIQGEATDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGR 584
           + D L+    A T   +L+ S  GK Y L      PAG    G+
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R 
Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIV
Sbjct: 10  INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR++++
Sbjct: 70  GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+
Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +R +  +
Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES    +RIV+  K 
Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +  +++  ++ L+ +++ F +N   L  GR P+++ L  ++K ++ HR EV+ RR+ 
Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL+IA  NIDE+IAII++   P+     ++ RFSL+E Q  AI+ +
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F      G 
Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  ++  A +    +     + + + +S+ G+I        R+     V       +
Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  + D V 
Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596

Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651
           AF+          + ++  LL  + KG   +++++ + A +R    G   + +  ++ + 
Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706
            V    G++ V +   N + + F    +  M R     KG+ L       +  +IC K  
Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/679 (34%), Positives = 372/679 (54%), Gaps = 61/679 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 QKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    +ALID+P I + +L++ + GPDFPTG +I+  R  I ++Y  GRG   +R R 
Sbjct: 196 SEVINGCIALIDDPAIELPELMQIVPGPDFPTGALIL-GRAGIRQAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ ++A R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR+   P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E      +L+S
Sbjct: 434 IDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E++        + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L H + I T               ++  +++G     + 
Sbjct: 606 LPIGTPQS---RGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSE 647
           S+ +   R GK  +K+  E
Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 DVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/712 (34%), Positives = 382/712 (53%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELLAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +      +T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+     D V +     + + FS+D +
Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDV 714


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/683 (33%), Positives = 385/683 (56%), Gaps = 33/683 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G+   +A+KKSARIVG+V+GK HPH
Sbjct: 78  FLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNSAYKKSARIVGDVLGKYHPH 137

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYDS+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYTEARM+++A L+++G+ +
Sbjct: 138 GDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARMSKIASLMVEGIKK 197

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + EP V P +FPNLL +G SGIAVGMAT IP HN+ E+  + + L  N
Sbjct: 198 NTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATKIPPHNLTEVINSFILLAKN 257

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +IS+E+L + + GPDFPTG  I      I ++Y+ GRG F +RA+  +E    G   I+
Sbjct: 258 NDISVEELAQSLPGPDFPTGATIF-GVSGIQQAYKTGRGSFILRAKAKIETFNSGKSKII 316

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
             EIPY+V+K  +IEK+ +L+  KR+  ++D+RDE+      V+F   +  +P++++  +
Sbjct: 317 FYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIRVVFEIKKGFNPEIILNQL 376

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  +D +  + +NM  +  G  P+++ L  IL ++L H++E+  R  +F ++    ++ +
Sbjct: 377 YKETDFQISYSMNMLAIVKGE-PKLLNLKEILYQYLLHQKEINLRGLNFDLEKYKEKLNV 435

Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L G+ +A  NIDE++ II+   ++ + +  +  RF L   Q  AI+++RL  L  L   +
Sbjct: 436 LLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKRFDLNPIQTKAIVDMRLGRLTSLAIEK 495

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           + +E++ + AE  +I+ ++ S ++    +   I +  EI +   D  R      E++   
Sbjct: 496 LMTEIEQIKAEINRIEEIIASDEK---LVQLVIDQHLEIINNFADPRR-----SEINGEI 547

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIALHAH 558
              + + +I +  + + +++  +++ +            V  S     + D LK    A+
Sbjct: 548 GNIIDEDLIPRSDVIISLTDNNYVKRINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFAN 607

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVTAFVY--DSTCKL 614
           T   +L++++  K + L    +      G+ I    L+ +  ++ I T  V+  D     
Sbjct: 608 THTDLLIITSKAKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDEQIYTLLVWNQDYAHHF 667

Query: 615 LVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM--KLVVKVTGDHVAVVGENR-KL 670
           LV  S+         E   N  K GK  LK++  + +    +VK       ++G +  K+
Sbjct: 668 LVTVSRLGLIKKTPLEFYKNINKNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKV 727

Query: 671 LIFSIDQIPEMSR----GKGVRL 689
             F  D I    R     KG++L
Sbjct: 728 NKFDFDSIRSTGRVAMGVKGIKL 750


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 354/607 (58%), Gaps = 38/607 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 10  IRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA RYTEARM
Sbjct: 70  RIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAMRYTEARM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM T+IP HN+
Sbjct: 130 SKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTTNIPPHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+ +   L++ I GPDFPTGG+I+  R  I+ +Y  G+G   VRA+ 
Sbjct: 190 SEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKGNVVVRAKT 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES      +    
Sbjct: 249 NIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGMRITIDI 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ ++F  + M+T F +NM  +  G  P  + L  +L+ +L H+ +V+ RR+
Sbjct: 309 RRDASASVVLNNLFKETQMQTNFGMNMVAIVNG-APHFLTLKQMLQYYLDHQEDVVRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
            F +   + R  IL+GL IA  +IDEI+ IIRN    D  K  ++SRF L + Q  AIL+
Sbjct: 368 KFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDDKQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ F       
Sbjct: 428 MRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRFGDD---- 483

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            RRT   E++ ++  +++ + +IEK+ + + +++ G+I        R+       +  + 
Sbjct: 484 -RRT---EITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589
            ++ D ++   ++ T D +L  +  GK Y+               LP  NLL     GE 
Sbjct: 540 VQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQ-LDKGEK 598

Query: 590 IQLLIDL 596
           IQ +I++
Sbjct: 599 IQAMINV 605


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 353/593 (59%), Gaps = 26/593 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E GL      +K A+IVG+V+G  HPH
Sbjct: 25  YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++AE +++ + +
Sbjct: 85  GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A  A IDN
Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI I++L +Y+ GPDFPTGG+I   R+ I ++++ GRG   VR ++ +E   +G   IV
Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327
            TE+PYQV  + L+ +I EL   K I  + ++ DE+++   +R+V+  K R     +++ 
Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  + +++ F +    L  GR P+ + L  ++K ++ HR +V+ RR+ F ++  + R 
Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+ L++A  NIDE+I IIR+   P+     ++ RF   + Q  AI++++L+ L  LE 
Sbjct: 382 HILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ EL  L      +  LL   ++    I  E  E+ E F      G  R T      
Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556
            ++  ++  +I+KE + ++IS+ G+I+ + + +           ++++  E D L     
Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           A T D I+ ++  GKAY L    +   S    G  I+ L+ ++ +++I TA V
Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVV 606


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/777 (33%), Positives = 418/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN EI IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  +++ ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIRYFIEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMERFQLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELVEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  +  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/620 (37%), Positives = 356/620 (57%), Gaps = 67/620 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  P+ +I++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ +
Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRNWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++++  E +  +L+  ++    I  E++++K  F +S  +G RR+T  E S  D +T  +
Sbjct: 488 DVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSK-VGARRST-VEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        RS K       A   KE D +     A+T D +L
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603

Query: 565 LLSTDGKAYTL-----PAGN 579
             S  G+ Y L     PAG+
Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/685 (34%), Positives = 394/685 (57%), Gaps = 26/685 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+V+G  H
Sbjct: 16  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGDVMGNYH 75

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   Y LI G GN+G+ D D AAA RYTEAR++++A  +L+ +
Sbjct: 76  PHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAMELLRDI 135

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS+FPNLL NG SGI+ G AT IP+HN++E+ +A +A++
Sbjct: 136 EKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVIDACVAMM 195

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D PE+++E+L+  I GPDFPTGGII+   E I ++Y  G+G   VRA+  +E V  G   
Sbjct: 196 DQPEMTVEQLMGIIKGPDFPTGGIIM-GEEGIKDAYTSGKGRIYVRAKTSIESVRGGRQQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           I+VTEIPYQV KSRL+  I  + + K++  + ++RDES  D +RIV+  K +  D   ++
Sbjct: 255 IIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLK-KDADAQGIL 313

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +   +D++  +  NM V  + + P+ + +  +L+ ++ H+++V+  R+ + ++  + R
Sbjct: 314 AYLLKKTDLQVTYNFNM-VAIVNKTPKQLGIREMLQAYIDHQKDVVIHRTQYDLEKAEDR 372

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DEII  I   +N    +  +V +++ TE Q DAIL L+L  L  LE
Sbjct: 373 AHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEKYAFTERQADAILTLQLYRLTNLE 432

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ EL++++ +   + S+L S K+  N I  E+ E+++ +     + RR     EV 
Sbjct: 433 VTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDKYG----IDRRSEIQGEVE 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH---FKEGDSLKIALHAH 558
              K  L + M+  E + V +S  G+I+  S+ S++     LH    KEGD ++  L  +
Sbjct: 489 EL-KVNL-EVMVTPEDVLVTLSQDGYIKRVSILSYTRSGGELHTTGLKEGDFVRHLLEVN 546

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF----VYDSTC 612
           T D +L+ +  G+ + LP   +     + +G AI  +I ++    IV         +S  
Sbjct: 547 TIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVNVIPVKNFEESGK 606

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLL 671
            L+ V+ KG     E  E +          KV   +E +++ V  +   + +V +    +
Sbjct: 607 SLVFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEVSESNKDLLLVTKQGMSI 666

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDG 695
            F  D++  M R   GVR    KDG
Sbjct: 667 RFREDEVNPMGRAAGGVRGIQLKDG 691


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/723 (33%), Positives = 396/723 (54%), Gaps = 62/723 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM   G D+   ++KS
Sbjct: 10  DIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGYDWTRPYRKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 70  ARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + AE +L+ +D++ VD+   Y+E   EP V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 130 LAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LA++DNP I+I++L+  + GPDFPTGG+I+  R  I E+Y  GRG   +R R
Sbjct: 190 LGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLIL-GRSGIREAYHTGRGSVVMRGR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +EE+ +  + IVVTEIPYQV KS+L+E+I E++  K +  + D+RDES  D VR+V+ 
Sbjct: 249 AEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDRDGVRVVVE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++  ++  + ++T F +NM  L+ GR P  M L  ++  ++  R EV+ R
Sbjct: 309 LKRDAIG-EVVLNQLYRYTQLQTSFGVNMLALNRGR-PVQMNLRDVIFAFVEFREEVITR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ F +     R  +L GL++A  N+D +IA+IR+                         
Sbjct: 367 RTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPATDVIDFI 426

Query: 411 ---DKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
              D P   +     + L++ Q  AIL+LRL+ L  +E  ++  E  ++ A  +    +L
Sbjct: 427 AIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIKDYLDIL 486

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    +  E+ + +E ++       RRT   E+  ++     + +I +E + V +S
Sbjct: 487 TSRPRLMGVLRDELLQTREAWAND-----RRT---EIMESEFEHDIEDLIAREDMVVTVS 538

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             G+I        R+ K      + +  ++ D +     A++   IL  ++ G+ Y L  
Sbjct: 539 YSGYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKT 598

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEES 629
             L  G  +  G  +  L+ L   + I T     +         ++  ++ G       S
Sbjct: 599 YRLPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALS 658

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK--- 685
           +     R GK  +K+   +++  V+    GD V +   + K + F +  +  + RG+   
Sbjct: 659 DFTNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADV-RLFRGRDSL 717

Query: 686 GVR 688
           GVR
Sbjct: 718 GVR 720


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/737 (32%), Positives = 399/737 (54%), Gaps = 41/737 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ YA+S I +RA+PD+RDG KPV RRI++   + G+       K A+IVGEV+GK
Sbjct: 13  VKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCAKIVGEVMGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG++DGD  AA RYTEAR++ +   +LQ
Sbjct: 73  FHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARLSNIGLELLQ 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V F   Y+    +P V P+  PNLL NG++GIAVGMATS+P HN+ E+ +A + 
Sbjct: 133 DLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNLGEVVDALVL 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNPE+++E++++ + GPDFPTG  +  SR  I E+Y  GRG  +VRAR   E+   G 
Sbjct: 193 MIDNPEVTLEEVMKVLPGPDFPTGAKL--SRRGIKEAYATGRGSLKVRARVRNED-KNGR 249

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V TEIPYQV K+ LI +IA L+  K I  +  +RDES      +     R  +P ++
Sbjct: 250 AMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVELKRGANPQVV 309

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  S ++T F +N+  +  G  P+V+ L  +++ +L HR  V+ +R+ + ++    
Sbjct: 310 LNKLYKHSRLQTSFTVNLLAIVKGE-PKVLTLLELMRHYLDHRGLVVRKRTEYELRKARE 368

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  +L+GLLIA  +IDE+IA+IR      + +  ++ RFSLTE Q  AIL++RL+ L  L
Sbjct: 369 RAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLMGRFSLTEVQAQAILDMRLQRLVGL 428

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E   L+ E  +++++L   K+ W  +  E+  +K+ +       +RRT   E 
Sbjct: 429 ERDKLQAEYRELMEEIGRLEAILGDEKRLWRVVRDELLAIKDKYGD-----QRRTQITEF 483

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
              ++    + +IE EP+ + ++++G++        R+     +   A   KE D     
Sbjct: 484 ---EEGFSLEDLIEDEPMVITLTSQGFVKRTPLEAYRAQGRGGMGAQAGKTKEEDEAISV 540

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDST 611
             A   D +L+ +  G+ Y      L   S +  G  I  L+ L   +++     V D T
Sbjct: 541 FVASMHDTLLIFTNRGRVYGEKVHELPEASRQARGTHIVSLLPLQEGEEVAALLNVRDLT 600

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENR 668
            +   V +  N  I +              + ++  E   LV   +   GD V +  ++ 
Sbjct: 601 QEGYFVFATKNGLIKKTEIKEYQNLSSAGLIAINLLENDALVGVAIAQEGDQVMLATQSG 660

Query: 669 KLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--- 721
           + + F +  +    R      G+R +  +D  +  ++     E    +      Y +   
Sbjct: 661 QAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESEVLAVGSHGYGKRTP 720

Query: 722 -SENDLLGWLGKRGGVG 737
            SE  L G    RGG+G
Sbjct: 721 ISEYPLQG----RGGMG 733


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIV
Sbjct: 10  INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR++++
Sbjct: 70  GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+
Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            +  +A ID   +I +E L++YI  PDFPTG  I      + +++  GRG   +R +  +
Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            EV      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES    +RIV+  K 
Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +  +++  ++ L+ +++ F +N   L  GR P+++ L  ++K ++ HR EV+ RR+ 
Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL+IA  NIDE+IAII++   P+     ++ RFSL+E Q  AI+ +
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F      G 
Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  ++  A +    +     + + + +S+ G+I        R+     V       +
Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  + D V 
Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596

Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651
           AF+          + ++  LL  + KG   +++++ + A +R    G   + +  ++ + 
Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706
            V    G++ V +   N + + F    +  M R     KG+ L       +  +IC K  
Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/535 (40%), Positives = 329/535 (61%), Gaps = 16/535 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  + A  +R
Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 315 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  +++ FSL+E Q
Sbjct: 373 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541
             TD   RRT   E + A  A++    +  +P  V++S+ G + R+  +  V++S
Sbjct: 492 -GTD---RRTVLLESAGAQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 541


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/702 (33%), Positives = 403/702 (57%), Gaps = 42/702 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V+L   +++ +L+YA+S I  RA+PD++DG KPV RRI+++M E+G+   A++KK+A
Sbjct: 22  IQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKAA 81

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE +M
Sbjct: 82  RVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVKM 141

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +++ +D++ +DF D Y+  + EP+V P+  PNLL NG +GIAVGMAT IP+HN+
Sbjct: 142 AKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHNL 201

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +  I+N +ISI++L+++I GPDFPTGG ++   +S+  +Y  G+G   ++A+ 
Sbjct: 202 GEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKAKS 260

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            V E  RG   I+VTEIPYQV+K+ LIEKIA L+  K +  + D+RDES+     ++   
Sbjct: 261 HVLE-ERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIEL 319

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++  ++  S +   F +NM  L +G+ PQ++ L  IL+ +   R EV+ R+ 
Sbjct: 320 KRDANAKIILNKLYKHSQLRISFGINMVAL-VGKTPQLVSLKQILEAFFNFRIEVINRQK 378

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           SF ++    R  ++  L+    +I+  I +I+     K     ++ +++  E Q  AIL 
Sbjct: 379 SFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKAILE 438

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           + L+ L   E  ++ +E  NL  E  +  S+++S K++   +  E+ E+K+ +       
Sbjct: 439 MSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDD---- 494

Query: 494 RRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542
            R+TT      ++  D     + +IEK+PI + I+N+G+I+S+        K     +S 
Sbjct: 495 -RKTTLNFDAPLNFED-----EDLIEKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSG 548

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD- 601
           +   E D ++      T D  L  +  GK Y L    +  G+   +   L+  L   +D 
Sbjct: 549 MKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDE 608

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEES---EIIANTRKGKTFLKVSSEEKMKLVV 654
            +T+F     +D +   L  ++K    IV+++   E    +++G   +++   +++  V 
Sbjct: 609 FLTSFTSIKNFDQSQDYLFFATKKG--IVKKTPLKEYSHISKRGLIAIRLKENDEVLTVK 666

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691
           K TG  ++ +   N   + F   +I  +SR      G+RL S
Sbjct: 667 KTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGS 708


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/535 (40%), Positives = 329/535 (61%), Gaps = 16/535 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  + A  +R
Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 315 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  +++ FSL+E Q
Sbjct: 373 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541
             TD   RRT   E + A  A++    +  +P  V++S+ G + R+  +  V++S
Sbjct: 492 -GTD---RRTVLLESAGAQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 541


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 354/607 (58%), Gaps = 38/607 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSA
Sbjct: 10  IRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA RYTEARM
Sbjct: 70  RIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAMRYTEARM 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM T+IP HN+
Sbjct: 130 SKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTTNIPPHNL 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+ +   L++ I GPDFPTGG+I+  R  I+ +Y  G+G   VRA+ 
Sbjct: 190 SEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKGNVVVRAKT 248

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES      +    
Sbjct: 249 NIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGMRITIDI 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R     +++ ++F  + M+T F +NM  +  G  P  + L  +L+ +L H+ +V+ RR+
Sbjct: 309 RRDASASVVLNNLFKETQMQTNFGMNMVAIVNG-APHFLTLKQMLQYYLDHQEDVVRRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
            F +   + R  IL+GL IA  +IDEI+ IIRN    D  K  ++SRF L + Q  AIL+
Sbjct: 368 KFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISRFELDDKQAQAILD 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ F       
Sbjct: 428 MRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRFGDD---- 483

Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            RRT   E++ ++  +++ + +IEK+ + + +++ G+I        R+       +  + 
Sbjct: 484 -RRT---EITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589
            ++ D ++   ++ T D +L  +  GK Y+               LP  NLL     GE 
Sbjct: 540 VQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRIAKGLPIINLLQ-LDKGEK 598

Query: 590 IQLLIDL 596
           IQ +I++
Sbjct: 599 IQAMINV 605


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 349/610 (57%), Gaps = 60/610 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD RDG KPVHRR++ AM EM  D+   +KKSAR+V
Sbjct: 11  VSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF   Y+E++ EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LAL+D+PE   E L   +  PDFPT G I   R   +E+YR GRG   +RAR C  
Sbjct: 191 ISACLALVDDPETPDEDLFTLVPAPDFPTAGFI-HGRAGSIEAYRTGRGRVVMRAR-CEF 248

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E  + S    I+VTE+PYQV K++LIE+IAE++  KR+  + D+RDES +    +     
Sbjct: 249 ETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMRIAIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+++ +++  + M++ F +NM  L  G  P+ + L  +L+ ++ HRREV+ RR+ 
Sbjct: 309 RDANADVVLNNLYQHTVMQSVFNINMVALLDG-APRTLGLRDLLQAFIQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR----- 420
           F ++    R  IL+GL +A +N+D +I++IR    P            +P MV+      
Sbjct: 368 FELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAALLVER 427

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L S  
Sbjct: 428 GEPSEGMHADGYHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEILGSKT 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRG 528
           +    I  E+  +++ +  +     RR+       AD   +  + +I +E + V  ++ G
Sbjct: 488 RLMEVIREELVAIRDQYGDA-----RRSEIV----ADTGDISTEDLITEEEMVVTFTHAG 538

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTL 575
           +I++      +          A   KE D ++    A T    L  S  G     K Y L
Sbjct: 539 YIKAQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQL 598

Query: 576 PAGNLLSGRG 585
           P     +GRG
Sbjct: 599 PQ----AGRG 604


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 261/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSA
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP HN+
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG   +RA+
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
              EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  E +RI++ 
Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +PD+++  ++  + +++ F +N+  L+   +P ++ L  I+K ++  +  V+ +
Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQVNVIIK 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E Q  AI
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNKYNFDEEQNKAI 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F  +  
Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDN-- 495

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544
              RRT   +    +     + +I      +++S  G+IR +      +        +++
Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602
            +  D + IA      D +L  +  GK Y     N+ S       + ++  LN   ++D 
Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610

Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +TA +     K     L  V+ KG     + SE     R GK  + +   +++  V   T
Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATT 670

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710
           G D V +  E+ K++      +   SR G GV+    +D     G IS    FK+   +T
Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAIS---SFKLTH-IT 726

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + + G       +D    +  R G G  V     R+GKF
Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 353/596 (59%), Gaps = 59/596 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM +MG D+  ++KKSARIVG VIGK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R+++++  IL+
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V++   Y++ +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CVEEVGRG 264
            +DN  I ++ L++++ GPDFPT GII   +  I ++Y  GRG   +RA    + +    
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIK-GIEDAYSTGRGKIYIRANSKIISDNKTK 255

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323
              I++ EIPYQV K RLIEKIA+L+  K+I  +  +RDES  D +RIV+  K R    +
Sbjct: 256 RESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIK-RDHIGE 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++ ++ ++  F +NM  L  G+ P+ + L  IL  +L HRR ++ R+++F ++ I
Sbjct: 315 IVLNNLYSMTQLQISFGINMVALCYGQ-PKTLSLKKILSYFLYHRRVIITRKTNFELKKI 373

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------------- 418
             R+ +L+   IA  NID +I++I+N +  +   +                         
Sbjct: 374 YYRLNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFF 433

Query: 419 -------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                        +++ +++ Q  AIL+LRL  L KLE  ++  E  +L+ +  K++ +L
Sbjct: 434 SKKQKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKIL 493

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               +  N I  E+  +K+ ++      +RRT    + +     ++  +I ++ + V +S
Sbjct: 494 KYPDELTNSIKKELLILKQEYN-----DKRRTKI--IKKPVNINIED-LINQKDVIVTLS 545

Query: 526 NRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           ++G+++   LK +          SA   KE D ++  L A+T D ILL S+ G+ Y
Sbjct: 546 HQGYVKYQPLKDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVY 601


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 341/581 (58%), Gaps = 27/581 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        
Sbjct: 5   VFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +L  +++D VDF   ++E + EP+V PS++PNLL NGTSGIAVGMAT+IP
Sbjct: 125 EARLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            HN++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R  I E+YR GR
Sbjct: 185 PHNLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRGIEEAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  
Sbjct: 244 AKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R ++ ++++  +   + ++  F + M  L +   P+V+ L  +L+E+L H
Sbjct: 304 EGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-INNQPKVLNLHQMLEEYLKH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR   N    K  ++ RF L+
Sbjct: 363 QEEVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFGLS 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + +
Sbjct: 423 DAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADEKKLLTVIRDEIMIISD 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +        RRT        D     + +I  E   + +++ G+I        RS    
Sbjct: 483 KYGDD-----RRTAIG----YDDDMSMEDLIPDEDTIIAMTHLGYIKRMDVDNFRSQNRG 533

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              +  +   E D ++  L       ++  +  G+ Y L A
Sbjct: 534 GKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKA 574


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 261/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSA
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMATSIP HN+
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG   +RA+
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
              EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  E +RI++ 
Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  +PD+++  ++  + +++ F +N+  L+   +P ++ L  I+K ++  +  V+ +
Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQISVIIK 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431
           RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E Q  AI
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNKYNFDEEQNKAI 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + F  +  
Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDN-- 495

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544
              RRT   +    +     + +I      +++S  G+IR +      +        +++
Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602
            +  D + IA      D +L  +  GK Y     N+ S       + ++  LN   ++D 
Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610

Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +TA +     K     L  V+ KG     + SE     R GK  + +   +++  V   T
Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATT 670

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710
           G D V +  E+ K++      +   SR G GV+    +D     G IS    FK+   +T
Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAIS---SFKLTH-IT 726

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + + G       +D    +  R G G  V     R+GKF
Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E  +A + 
Sbjct: 134 DIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   VR +  VE+ G+  
Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323
             IV+TEIPY V K+ LIE+IA++        + +IRDES    +RIV+  PK+   + +
Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKD--ANEE 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+ RR+ +  +  
Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            RR  +++GLL A   I  ++ I+RN    +  +  ++    +TE Q  AIL++RL  L 
Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +        RRT   
Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP-----RRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           EV+       ++ +I +E + + +S++G++        RS K     ++     E D ++
Sbjct: 482 EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             + A  T   L ++  G+AY L    L  +GR   G  I   ++L   + IV     + 
Sbjct: 542 FVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601

Query: 611 TCKLLVVSSK 620
             + LV+++K
Sbjct: 602 EGRDLVIATK 611


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/721 (33%), Positives = 410/721 (56%), Gaps = 44/721 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR++  M+E+G +    +K
Sbjct: 4   QDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++E +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGMAT++  
Sbjct: 124 ARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I I ++L+YI  PDFPTGGII      + E++  GRG   VR
Sbjct: 184 HNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIY-GYAGVKEAFETGRGRIVVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           ++  +E   +G   IV+ EIPYQV K  LI+ +  L+  K++  +  I DES  E +RIV
Sbjct: 243 SKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  +  +++  +F  + +++ F +N   L  GR P+++ +  ++  ++ HR EV+
Sbjct: 303 VDVK-RDANSSVVLNKLFKYTALQSSFSVNNIALVHGR-PRMLNVKDLIHYFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F +   ++R  +L+G +I   N+DE I IIR+   P   +  ++ RF L+E Q  
Sbjct: 361 IRRTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMERFGLSEIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  +E+ ++++E + ++     +  +L   + +   I  E+ EVK  +  +
Sbjct: 421 AIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIELRMQIIKDELLEVKAKYGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT    V  +++   +    + E I + IS+ G+I        R+     V   
Sbjct: 481 -----RRTQI--VYSSEEFNPEDFYADDEMI-ITISHLGYIKRTALSEFRAQGRGGVGSK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A   + +L  ++ GK Y L   ++  G     G AIQ +++++ N
Sbjct: 533 GSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKGRAIQNMLNID-N 591

Query: 600 QDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EE 648
            D V AF+         Y  +  L+  +  G   +++++ + A +R  +  +   +  E+
Sbjct: 592 DDKVNAFIRVKGLNDPEYTKSHYLIFATKNG---VIKKTSLEAYSRPRQNGVNAITIRED 648

Query: 649 KMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              + V++T  +  V+  NR  + + F   ++ EM R   GVR  +  + G  D +   I
Sbjct: 649 DQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREMGRTATGVRGMTLDEDG-EDELVGMI 707

Query: 706 C 706
           C
Sbjct: 708 C 708


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 264/774 (34%), Positives = 411/774 (53%), Gaps = 84/774 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDG KP  RRI++AM  + L  G   +K A+I G+  G 
Sbjct: 18  MKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGD 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+Q +Y +LVR+AQP++ RY L+ GQGNFG++DGD  AA RYTEAR+T  +  ++ 
Sbjct: 78  FHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYTEARLTHASIQLMD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VD    Y+E  SEP VFP+KFPNLL NG+SGIAVGMAT+IP HN++E+  A   
Sbjct: 138 DLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLKELINATKL 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++DNP  SI+++++ +  PDFPTGGII   R  + E+Y  GRG   +R    +EE  +  
Sbjct: 198 VLDNPNTSIQEIMQVMPAPDFPTGGIICGYR-GVKEAYHTGRGKIILRGVVNIEE-KKDR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V+ +IPY V KSRLIE+IAEL   K +  + D+RDES +    ++    R   PD++
Sbjct: 256 EILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIVIELKRGEIPDVI 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  +D++  F  NM  L  G +P+ M +  ++  W+ HR EV+ RR+ + +Q  + 
Sbjct: 316 INQLYKFTDLQVTFGCNMLALDKG-LPRTMNIKQLIGSWVDHRIEVVRRRTRYELQKAEA 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ IL+G L A  N+DE++ IIR   + ++ K  ++  F  +  Q +A+L+LRL  L  L
Sbjct: 375 RLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEHFEFSIKQANAVLDLRLYQLTGL 434

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+SE D LL + E   ++L S +   + I  E+ E+ ++  KS     R T   E 
Sbjct: 435 ERDKIQSEYDELLKKIEYYRAVLASEQMVRDIIKEELDEI-QVKHKS----ERATQIVE- 488

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHF---KEGDSLKI 553
             A+     + +I  EP  + IS   +I+ +   +           + F   KE D LK 
Sbjct: 489 --AEGDMDIEDLIANEPAIITISQDDYIKRMPVDTFREQRRGGTGVVGFNQKKEEDVLKG 546

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA-IQLLIDLNHNQDIVTA----- 605
              A+T D +L+ +  G+ Y L    +  G  R  G+  + LL D+   + I T      
Sbjct: 547 LYVANTHDHLLVFTNLGRCYWLKVWQIPEGSRRSKGKPLVNLLSDIRSEESIATVLQTSN 606

Query: 606 -----FVYDSTCKLLVVSSKGNAF------------IVE------------ESEIIANTR 636
                +V  +T   +V  +  +AF            IVE            E +++  T 
Sbjct: 607 FEGDRYVLMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEGARLVEGEQQVMLFTH 666

Query: 637 KGKT----FLKVSSEEKMKLVVK---VTGDHVAVVG-----ENRKLLIF---------SI 675
            G        KV S  +M   VK   + GD+  VVG      N  +LI          ++
Sbjct: 667 NGMAVRFDHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNETVLIVCENGFGKRSTV 726

Query: 676 DQIPEMSRGK-GVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
               + +RG  GVR  + S ++G +   +C    +GL  + S+G++   S  DL
Sbjct: 727 SDFRQTNRGGVGVRSIITSERNGKVVGAVCITDDDGLLMMSSSGQTLRISMKDL 780


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/712 (35%), Positives = 377/712 (52%), Gaps = 75/712 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ +M+E G      + KS
Sbjct: 15  GVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMNEQGHTPDRGYVKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD ++YD++VR+AQPF     LI GQGNFG++D D  AA RYTE+R
Sbjct: 75  ARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSVDNDPPAAMRYTESR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ A  IL  +D+D VDF+D Y+  + EPVV PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 135 MTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A LA IDNPEI +++LL+ + GPDFPTGG I+  R    ++   GRG   +R +
Sbjct: 195 LGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEII-GRSGARQALMTGRGSVIMRGK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +    IV+T IPYQV K+ L+E+IAEL+  KRI  + D+RDES  D   V+  
Sbjct: 254 ATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLRDESDRDGMRVVVE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F +NM  L+ GR P+ M L  ++  ++  R EV+ RR
Sbjct: 314 MKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGR-PEQMGLREMVTAFVDFREEVVVRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVMV 418
           + F +     R  +L GL IA  NIDE I IIR+   P                  P++ 
Sbjct: 373 TKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAKDWPAGDMLPLVE 432

Query: 419 ------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                       ++  LT+ Q  AIL L L  L  L   +I  E   L         +L 
Sbjct: 433 LIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEARELAGVIRGHLEILA 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++    +  E+ +V+E F+       RRT   E+   D     + +I +E + + +++
Sbjct: 493 SRERVMAIVREELVQVREQFAVP-----RRT---EIVEGDADVEDEDLIAREEMVITVTH 544

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+        S +  KE D++     A+T   +L  S+ GKAY     
Sbjct: 545 GGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYKLKVW 604

Query: 575 -LPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            LP G   S RG           GE+I  ++ L   +D  T   YD    ++  +  GN 
Sbjct: 605 RLPLGTPTS-RGKAFVNLLPIEPGESITSILPL--PEDEATWDQYD----VMFATRSGNV 657

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
              + S+ +   R GK  +K+   +       + G  V   G+N  LL  ++
Sbjct: 658 RRNKLSDFVDIRRNGKIAMKLDEGD------AIIGVGVCNAGQNDVLLTTAL 703


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 356/611 (58%), Gaps = 29/611 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID     N E SIE +L+ + GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L +   P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILEMLNYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN    +     ++  F LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I       +EI 
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIK------EEIL 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
             S   G  R T       D +T  + +I ++ + + ++  G+I+ + + +         
Sbjct: 479 VISGKYGDDRRTSIGFDELDLST--EDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      T + I+  +  G+ Y +    +  +GR   G AI  L+ L
Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV 607
             ++ I TA +
Sbjct: 597 MPDEKI-TAMI 606


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/661 (35%), Positives = 387/661 (58%), Gaps = 41/661 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP + P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT+  E     K  +++ ++E E + + +SN G+ +  +LKS+   S 
Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642
           IDL  ++ I+ AF + D T +  +L ++  G       + F    ++I+A   +KG++ +
Sbjct: 602 IDL--SETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659

Query: 643 K 643
           K
Sbjct: 660 K 660


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/613 (38%), Positives = 353/613 (57%), Gaps = 71/613 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +D++ VDF   Y+  + EP V P++ PNLL NG+SGIAVGMAT++P HN++E+
Sbjct: 131 AQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L  ID PE +++ L+E I  PDFPT GII    + + E YR GRG   +RA+   E
Sbjct: 191 VAACLYAIDAPECTVDDLIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           ++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +D +R+V+  K 
Sbjct: 250 DMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELK- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGINMVALVDGQ-PRLLNLRDLIFYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420
           F ++    R  +L+GL +A  NIDE IAII+    P PV                 M+SR
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTP-PVAKADLVAKSWDSSIVREMLSR 426

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   ILN+RL+ L  LE+ +I +E  
Sbjct: 427 TELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYK 486

Query: 453 NLLAEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            ++   ++I  LL+  S  ++ NQI  +     E+ S   +    R +  E +  +  T 
Sbjct: 487 EVI---DQIADLLDILSKPERINQIIKD-----ELTSIGNEFADERRSMIEFNATELGT- 537

Query: 511 QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V +S+ G+I        R+ K       A   KE D +     A+T D 
Sbjct: 538 -EDLITPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDT 596

Query: 563 ILLLSTDGKAYTL 575
           IL  S  G+ Y L
Sbjct: 597 ILYFSNAGRVYWL 609


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/724 (35%), Positives = 396/724 (54%), Gaps = 45/724 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EE +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM E+GL    
Sbjct: 2   SISEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  + ++ +L+ +D + V+F D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+  R  I E+Y  G+G 
Sbjct: 182 NIPPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKIL-GRSGIREAYTTGQGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++T++PYQ  K+ LIEKIAE++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R   P +++ +++  + +++ F  NM  L   R P+ + L   LK +L
Sbjct: 301 DRQGMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSR-PERLTLSRYLKVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D II++IR+  D P  K  ++ RF 
Sbjct: 360 EFRVETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIERFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           L+E Q DAIL ++LR L  LE ++I++   EL N++A+ + I   L   ++  + I  E 
Sbjct: 420 LSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADLQDI---LARRERILDIIESEA 476

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+KE          RRT   E+   +       +I  E   ++++ +G+I+ +  ++ D
Sbjct: 477 IELKERHGSP-----RRT---EIEHTEGELEDTDLIANEKAIILVTEQGYIKRMPVNTFD 528

Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                    S    KE D +   L     D IL  S  G     KAY +P     S    
Sbjct: 529 AQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIPVA---SRTAR 585

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
           G  I  ++ +   + I +       S  + LV+ +KG      E    +N R  G   + 
Sbjct: 586 GVPIVQMLPIPKQERITSVVPVSEFSDDEYLVMLTKGGYIKKTELSAFSNIRANGLIAIS 645

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVI 701
           +   ++++ V     D   ++G    + I F  D       G+  R ++S K G   ++I
Sbjct: 646 LGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRGVKSMKLGKKDELI 705

Query: 702 CFKI 705
              I
Sbjct: 706 SMDI 709


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/734 (33%), Positives = 403/734 (54%), Gaps = 80/734 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-------------IAKRIPLL 298
           +R++    E+      +++ EIP+ ++K+ LI+KIA+L              I +R   L
Sbjct: 256 LRSKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQR--FL 310

Query: 299 EDIRDES--AEDVRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           ++IRDES   E +R+++  K  S + DL  ++ +++  + ++  F +N+ +L  G+ PQ+
Sbjct: 311 QNIRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQL 369

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           + +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+
Sbjct: 370 LGIGAIIRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPE 429

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
            ++  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  
Sbjct: 430 VIIQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYEN 489

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ E+K  F    DL +   T   +++  K       I KE I + ++   +I ++ 
Sbjct: 490 IKKELIEIKNEF--KNDLRKTLITPKGIAKITKWD----CIPKEDIILKVTQNNYIAAIP 543

Query: 535 SHSVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-------- 577
              +DL         S+  FK GD     L + + D + + +   + + L A        
Sbjct: 544 LDKIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISAN 603

Query: 578 ----------GNLLSGRGHGEAIQLLIDLNHNQ----------DIVTAFVYDSTCKLLVV 617
                      NL+   G  E    +I L+  +          D++ A  +    K+   
Sbjct: 604 KKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFY 663

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                 F +E+       + GKT +++S  +++K V+K+  D   ++  ++  +I     
Sbjct: 664 K-----FFLEKK-----WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSS 713

Query: 678 IPEMSRGK---GVR 688
           I E  R +   GVR
Sbjct: 714 ILEAKRTRKTFGVR 727


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/694 (34%), Positives = 379/694 (54%), Gaps = 65/694 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 QKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + ++++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSIVMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  N+  L+ G+  Q+  LD +L+ +++ R +V+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLD-MLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ + AE +    +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKEELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDG-----KA 572
           G+I        R+ +      S +  ++ D +     L+ HT   +L  S+ G     K 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTP--VLFFSSRGIVYKEKV 603

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626
           + LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     
Sbjct: 604 WRLPIGTPTS---RGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + S+ +   R GK  +K+  E    L V+   +H
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEH 694


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/630 (37%), Positives = 365/630 (57%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR G+G 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGKGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L +   P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR      + K  ++ RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEI 485
           Q  AI+++RLR+L  LE    + +L N   E EK  + L       N++   I+ E++ I
Sbjct: 425 QAQAIVDMRLRALTGLE----REKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
             K  D  R +  + E   +      + +I  E + V I+N G+I+ + S +        
Sbjct: 481 SDKYGDDRRTKIGYDEFDMS-----AEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGG 535

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +  +   + D ++  L   T   ++  +  G+ Y L A  +  +GR   G AI  LI 
Sbjct: 536 KGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQ 595

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621
           L   + I TA V    +D    L + +  G
Sbjct: 596 LQPGEKI-TATVPMKEFDEDKFLFMATKNG 624


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/591 (38%), Positives = 355/591 (60%), Gaps = 25/591 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E+G +    +KKSARIV
Sbjct: 16  INIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGNNSNKPYKKSARIV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S+YD++VR+AQP+  RY L+ GQGNFG++DGD  AA RYTE R+ ++
Sbjct: 76  GEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMPAAMRYTEIRLQRM 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D++ VDF   +++   EP V P++ PNLL NG SGIAVGMAT+I  HN+ E+
Sbjct: 136 AEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVGMATNIMPHNLSEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A IDN +I+IE+L++++  PDFPTGGII    E + + +  GRG   VR +  VE
Sbjct: 196 VDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIY-GYEGVKQGFETGRGRVVVRGKVNVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
               G   +V+ E+PYQ+ K+ L +KIA+L   K I  + + RDES  D +R+V+  K  
Sbjct: 255 TSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESDRDGMRLVIDLKRE 314

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           ++  ++++  ++  S+++T + +N   L  GR P+V+ L  +L E++  R EV+ RR+ F
Sbjct: 315 AI-ANVVINQLYKYSELQTSYGINNVALVKGR-PRVLNLKDMLSEFVDFRHEVVVRRTRF 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++  + +  IL+G LIA  ++DE+IA+IR    P   K  +++RF L+E Q  AIL LR
Sbjct: 373 DLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTRFELSEIQSKAILELR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  +E  +IK E D ++     +  +L+    ++  I  E+ +VK+ F      G  
Sbjct: 433 LQRLTGMERDKIKEEYDEVMKLIAYLKEILSDEGLRFKIIKDELEDVKKRF------GDE 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFK--E 547
           R T  E+         + +I +E + + IS+ G+I+   ++           AL  K  E
Sbjct: 487 RKT--EIQYLASEMRMEDIIAEEDVVITISHLGYIKRTSAYDYRQQKRGGRGALGGKTRE 544

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            D ++    A T   +L  +  G+ Y L    +  G   G G AIQ LI+L
Sbjct: 545 EDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEIPEGEKSGKGRAIQNLINL 595


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/716 (34%), Positives = 388/716 (54%), Gaps = 63/716 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM E G  +   +
Sbjct: 11  ITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMHEGGYHWNRKY 70

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS+RIVG+V+GK HPHGDQS+YD++VR+AQ +     LI GQGNFG+IDGD  AA RYT
Sbjct: 71  VKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSIDGDPPAAMRYT 130

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ ++A  +++ +D+D VDF++TY+    EP V P++FPNLL NG  GIAVGMAT+IP
Sbjct: 131 ESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGGIAVGMATNIP 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    +A++DNP I + +L++ I GPDFPT GII+  +  I +++  GRG   +
Sbjct: 191 PHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIIL-GQAGIRQAFETGRGSVIM 249

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE +      I++TE+PYQV KS +IEK+AEL+  KRI  + D+RDES      V
Sbjct: 250 RGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLRDESDRQGYRV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + D+++  ++  + +++ F +NM  L+ G+ P++M L  +LK +++ R +V+
Sbjct: 310 VIELKRDANADVIINQLYRYTPLQSSFGVNMVALNGGK-PELMNLIDMLKAFVSFREDVI 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420
            RR+ + ++    R  +L GL IA  NIDE+IA+IR    P    + +M  R        
Sbjct: 369 TRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTRRWPAMDVEV 428

Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            ++L+E Q  AIL LRL  L  L   +I  EL  +  E +    
Sbjct: 429 LIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKIGEEIKDFLE 488

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +    +  E+  V++ F        RRT   E          + +I +E + V 
Sbjct: 489 ILGSRIRVQQIVKDELIAVRDEFGVP-----RRTVIAE---GGPDMDDEDLIAREDMVVT 540

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570
           +S+ G+I        R+ +      S +  K+ D +     A+T   +L  S+ G     
Sbjct: 541 VSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKE 600

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVV---SSKGNAF 624
           K + LP G   S    G+A+  ++ L   + I +       +++C  L V   + +G   
Sbjct: 601 KVWRLPIGTPTS---RGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVR 657

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQI 678
             + S+ +   R GK  +K+ S+    L V+     D V +     + + FS+D +
Sbjct: 658 RNKLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDV 713


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 252/772 (32%), Positives = 423/772 (54%), Gaps = 47/772 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++  ++ HR +
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF L+E Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFKLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E D ++ +   ++S+L   +     I  E+ EV+  + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645
            + D V A++         Y ++  +L  +  G   +++++ +   +R    G   + + 
Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700
            ++++  V    G++ + +   N + + F    +  M R   GVR  +  D G  +V   
Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           IC K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/722 (36%), Positives = 391/722 (54%), Gaps = 53/722 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP  SIE++LE + GPDFPT G I+   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSNPNASIEEILEVMPGPDFPT-GGIICGGEGIRSTYHTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D +R+
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV
Sbjct: 304 VLELK-KGESSEIVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRTEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IRN D     K  +V  F  TE Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVENFGFTEQQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRL  L  LE  +I+ E D LL +      +L       + I  E+++++ +   
Sbjct: 422 VAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRVLADEGLVKDIIRNELQDIQRVHKT 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540
                R R  F            + +I  EP+ + IS   +++ +        K     +
Sbjct: 482 PR---RTRIEFDADD----IRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584
           S    K+G D LK    A T D +L+ +  G+ Y      LP G          N L G 
Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
             GE +  ++++ + ++    F++ +T   +V      AF        +N R KG   L+
Sbjct: 595 RPGEQLAAVLNVKNFEN--AGFLFLATKHGVVKKVALEAF--------SNPRKKGIRALE 644

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++     +T +   V+   R    + F  D++  M R  +GVR  S K+     V
Sbjct: 645 IDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVV 704

Query: 701 IC 702
            C
Sbjct: 705 AC 706


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 DVMAQIADLLDILARPERITTMIGEELTAVKAEF------GDARRSRIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 272/813 (33%), Positives = 425/813 (52%), Gaps = 123/813 (15%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +
Sbjct: 4   IAKEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    + LI+NP  +I+ L+E I GPDFPTGGII   R  I+ +YR GRG   V
Sbjct: 184 PHNLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGII-NGRAGILMAYRTGRGRIYV 242

Query: 253 RARWCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           RA+  V   E+  R +  I++ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D 
Sbjct: 243 RAKAEVVTDEKTNRDT--ILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    D+++ +++  + +++ F +N+  L +   P+V+ L  +L+ +++HRR
Sbjct: 301 LRVVIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVAL-VDDQPKVLNLKQMLEHFISHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P   +  +++R      
Sbjct: 360 EVVTRRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNT 419

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  QV AIL LRL  L  +E  ++ +E +
Sbjct: 420 ISQFLERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYE 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATL 510
             L +  +   +L++        A  + EV  +E+ +   + G  R T  + S+ D    
Sbjct: 480 EKLQQISEYLEILSN--------AVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTV- 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E   V IS+ G+ ++         +   +  +A   K+ D ++  L A+T D 
Sbjct: 531 -EDLINEEDRVVTISHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDY 589

Query: 563 ILLLSTDG-----KAYTLP-AGNLLSGRG--------HGEAIQLL--------------- 593
           IL  +  G     K Y +P AG    GR          GE I  +               
Sbjct: 590 ILCFTNAGKVFWLKVYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDRFIVMA 649

Query: 594 ------------------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNA--FIVE 627
                                   IDL     +V   + D    ++++SS G A  F  E
Sbjct: 650 TSQGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEE 709

Query: 628 ESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-K 685
           +   +  T +G   ++++ E + + +V+   G  V  V EN       +D  P   RG +
Sbjct: 710 QVRSMGRTSRGVRGIRMADEHRVIAMVIPADGGKVLTVSENGYGKRTDVDDFPTKGRGSQ 769

Query: 686 GV-RLQ-SYKDGGISDVICFKICEGLTWIDSAG 716
           GV  +Q S ++GG+   +     + L  I   G
Sbjct: 770 GVIAMQVSERNGGLVGAVQIFDGDELMMISDQG 802


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/698 (34%), Positives = 395/698 (56%), Gaps = 39/698 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM E GL F    +K A+IV
Sbjct: 15  ISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKIV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++
Sbjct: 75  GDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARI 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +++ + ++ V F   +++ D EP V P +FP LLANG+SGIAVGM T++P HN++EI
Sbjct: 135 AESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLREI 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  A I+NP +SI++L + I GPDFPTGGII   +  I +SY  GRG   VRAR+ +E
Sbjct: 195 AAAISAYIENPNLSIQELCDCINGPDFPTGGIIF-GKNGIRQSYETGRGKIVVRARFTIE 253

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKN 317
              +G   I+ TE+PYQV  + L+ +I EL  AK I  + ++ DE+++   +RIV+  K 
Sbjct: 254 TDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVELK- 312

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +     +++  +F  + +++ F +    L  GR P+++ L  +++ ++ HR +V+ RR+ 
Sbjct: 313 KGTPAQVVLNHLFAKTPLQSSFNVINLALVEGR-PRMLTLKDLVRYFVEHRVDVVTRRAH 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNL 434
           F ++    R+ +++ L+ A   ID+II +IR   N +  K  +  +F     Q  AI+++
Sbjct: 372 FELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAIVDM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
           +++ L  LE   +++EL +L      ++ LL S ++    +  E R++ ++F   + TD+
Sbjct: 432 QMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDI 491

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                 + +V         +  I+KE + ++IS+ G+I+ +   +        K   S  
Sbjct: 492 VSNEIEYLDV---------EDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSAN 542

Query: 553 IALH--------AHTTDRILLLSTDGKAYTLPA-GNLLSGRGH-GEAIQLLIDLNHNQDI 602
           +A H        A T D ++ +++ G+AY L   G   SGR + G  I+ L+ +  +++I
Sbjct: 543 LAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEI 602

Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            TA V    + +   + + +++G    V     +    +G   LK+S  + +   V V  
Sbjct: 603 -TAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQD 661

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691
            D V ++    K L  S  ++ EM R      G++L S
Sbjct: 662 EDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTS 699


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 365/614 (59%), Gaps = 37/614 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E VK+V +   +E+ Y+ YA+S I  RA+PD+RDG KPVH+RI++AM   G+   A+ 
Sbjct: 12  VAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAMHRSGVTSNASH 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KS+ IVG+ +G  HPHGDQS+YD+L R+AQ F  RYPLI GQGNFG++DGD  AA RYT
Sbjct: 72  RKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSVDGDPPAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM  ++E +L  ++ D VDF+  Y+    EP V PS  PNLL NG+SGIAVGM+T+IP
Sbjct: 132 EARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSSGIAVGMSTNIP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + LIDNP+ ++E L+E++ GPDFPTG  IV  R +I ++Y+ GRG  RV
Sbjct: 192 PHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIV-GRNAIHQAYKTGRGRLRV 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           RA + V++       IV+TE+P+Q  K+RLI++IA+ +    I  + D+RDES  D +R+
Sbjct: 251 RAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLRDESDRDGIRV 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQVMPLDGILKEWLAHR 368
           V+  K  ++ P+++   +     +  R     +++S+  V   P+V+ L  +L+ +L HR
Sbjct: 306 VVELKQNAI-PEVVENQL-----LNHRLERTFSIISLALVDGQPKVLTLKELLQHYLDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           R+V+ RRS F +   + R  IL+G L A  NID+++ +IRN D     +  +   F  +E
Sbjct: 360 RDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARSGLQGTFDFSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + I+ ++L SL  LE  +I++E +++ A  E+++++L    +    I  E+ E+KE 
Sbjct: 420 KQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLETILGDESELLGVIKEELLEMKEK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           ++       RRT   E +       ++ +I +E + VV++ + +++ +     D      
Sbjct: 480 YADE-----RRTKIVEDT---SEVTREDLIAEEDVFVVVTEQDYVKRMPIEQFDAQGRGG 531

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
                   KE D++     A+T D +L  +  G+ Y L    +  +S    G++   ++D
Sbjct: 532 KGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPEMSRTARGKSAVNILD 591

Query: 596 LNHNQDIVTAFVYD 609
           L+  +DI      D
Sbjct: 592 LDKGEDITAVITTD 605


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/710 (34%), Positives = 385/710 (54%), Gaps = 91/710 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  GA +KKSA
Sbjct: 8   VIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGDSAAA RYTEARM
Sbjct: 68  RIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTEARM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIAVGMAT IP HN+
Sbjct: 128 TRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A +A ID+P+I I+ L++++  PDFPTGGII      + E+Y  GRG   +RA+ 
Sbjct: 188 GETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIY-GYAGVYEAYHTGRGRVVMRAKM 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
             EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDES  D +RIV+  
Sbjct: 247 HEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIVIEL 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K +  + +++   ++  S ++  F +NM  L  GR PQV+ L   ++ ++ HR E++ RR
Sbjct: 307 K-QGANAEIVKNQVYKHSRLQDTFGVNMVALVGGR-PQVVTLKDAIRHYVDHRHEIVVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPK 414
           + + +     R  IL+GL +A  ++D +IAIIR+                     +D  +
Sbjct: 365 TEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDDLR 424

Query: 415 PVMV-----SRFSLTENQVDAILN------------------------LRLR--SLRKLE 443
            + V           ++ V A+L                         LRLR   L  LE
Sbjct: 425 TINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTGLE 484

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +I  E ++++ +  +   +LNS  ++   I  E+  VKE F         R T  + +
Sbjct: 485 REKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE------RRTEIDYT 538

Query: 504 RADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIAL 555
             D   ++  +IE++ + V I+N+G          R+     V +     +E D ++   
Sbjct: 539 GGDDIIIED-LIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLY 597

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             H+ D +LL +  G+ + L    +  G     G +I+ LID++           D   +
Sbjct: 598 VCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDP----------DDRVR 647

Query: 614 LLVVSSKGN----AFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV 656
            ++  SK N    AF+     ++A TR+G   KT L+  S  +   ++ +
Sbjct: 648 AVISVSKENFEDEAFL-NSHYVLAATRQGQVKKTALEAYSRPRSNGIIGI 696


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/679 (36%), Positives = 382/679 (56%), Gaps = 53/679 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E ++E++LE I GPDFPTG  I+  R  I E+YR GRG 
Sbjct: 187 NLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 246 IRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWL 365
             +     R  + ++++  +   + ++  F + M  L   S G + P+V+ +  +L  +L
Sbjct: 306 MRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H++EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  ++SRF 
Sbjct: 366 DHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSRFG 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+++RLR+L  LE  ++++E   L A   ++ S+L   K+    I     E+
Sbjct: 426 LSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIAELKSILADEKKLLGVIK---EEI 482

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539
             I +K  D  R    F E   +      + +I  E   V ++  G+I+ +   SVD   
Sbjct: 483 SIISAKYGDDRRTSIGFDEFDMS-----MEDLIPDESTIVAMTKLGYIKRM---SVDNFK 534

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                   +  +   + D ++  +   T   ++  +  G     K Y +P G+  S    
Sbjct: 535 NQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTS---R 591

Query: 587 GEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKT 640
           G AI  L+ +   + I TA +    YD    L + +  G   +V+++ ++  AN RK   
Sbjct: 592 GTAIVNLLQMLPGESI-TAIIPMKEYDDDKFLFMATRNG---MVKKTPMMEYANVRKNGL 647

Query: 641 FLKVSSEEKMKLVVKVTGD 659
              V  E    + VK T D
Sbjct: 648 QAIVLRENDELIEVKATDD 666


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 EVMAQIADLLDILARPERITTMIGEELTSVKAEF------GDARRSKIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 DVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/732 (34%), Positives = 404/732 (55%), Gaps = 69/732 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+KKSAR+V
Sbjct: 11  VNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY ++ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEIRMKKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  +D++ VDF D Y+  +  P V P++ P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258
               LAL+ +P++++++L+E+I GPDFPTG II   R  I+++YR GRG   VRAR   +
Sbjct: 191 VSGCLALLGDPDLTVDELMEHIPGPDFPTGAII-NGRAGIIQAYRTGRGRIYVRARAEVI 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +  RG   I+V EIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D   V+    R
Sbjct: 250 HDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVVIELRR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ +++  + +++ F +NM  L  G+ P+++ L  IL+ ++ HRREV+ RR+ +
Sbjct: 310 GEVGDVVLNNLYAQTQLQSVFGINMVALVDGQ-PKILNLKEILEAFVRHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------------- 420
            ++    R  +L+GL IA  NID +I +I+   +  + K  +++R               
Sbjct: 369 LLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGMLERAG 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+  Q  AIL LRL  L  LE  ++ +E +  L E  + 
Sbjct: 429 DDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLREIAEY 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L+   +    I  E+ E+       T+ G  R T    S+ D     + +I +E   
Sbjct: 489 LEILSDADRLKAVIREELEEI------VTEYGDERRTEITASQHDLTV--EDLITEEDRV 540

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS+ G+ ++         +   +  SA   K+ D ++  L A T   IL  S  GK Y
Sbjct: 541 VTISHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVY 600

Query: 574 TLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            L    + L+GR   G  +  L+ L   + + +      Y     + + ++ G    V++
Sbjct: 601 WLKVYQIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYTEGHYIFMATASGT---VKK 657

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683
           + +I   R+    L+    E+  ++V     TGD  V ++    K + F    +  M R 
Sbjct: 658 TALINFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAMGRT 717

Query: 684 GKGVRLQSYKDG 695
            +GVR     DG
Sbjct: 718 ARGVRGIKLGDG 729


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/661 (34%), Positives = 385/661 (58%), Gaps = 41/661 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT+  E     K  +++ ++E E + + +SN G+ +  +LKS+   S 
Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642
           IDL  ++ I+ AF    + +   +L ++  G       + F    ++I+A   +KG++ +
Sbjct: 602 IDL--SETIMEAFSIEAFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659

Query: 643 K 643
           K
Sbjct: 660 K 660


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 365/598 (61%), Gaps = 21/598 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI+ A  E+GL    A 
Sbjct: 1   MKEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F QRY LI GQGNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T++AE +L  +D+  V+F D ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A + L+D P   +E +++ ++ GPDFPTG  I+   + I  +Y+ G+G   
Sbjct: 181 PHNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASII-GNDGIKAAYQSGKGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E+  R    +++TEIPYQV KS+LIE+IAEL+   +I  + D+RDES  + +R
Sbjct: 240 LRAKSKIEKKKR-HKNLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K  + DP+L +  ++  ++++  F +N+  ++  + P VM L  IL  +L  R+E
Sbjct: 299 IVIELKANA-DPELTLNRLYKYTNLQNNFRINLLAIN-DKKPVVMGLLEILNHFLDFRKE 356

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427
           ++   S + +   + R  IL+GL  A   +D +I +IRN +  K     +V +  ++E Q
Sbjct: 357 IIKNHSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSEAKKEAKAKLVKKLKISERQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             +IL ++L+ L  +E  ++++E  +L  + +   ++LN+ ++  + +  E++E+K+ FS
Sbjct: 417 AQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNEEELKSVLRAELKEIKKKFS 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 RR     + S+A+    +  +I+++   + +S RG I+     + +   L   +
Sbjct: 477 DP----RRTDIIADDSKAE--ITKNDLIKEKKAIISLSYRGIIK----RNDEYKNLRTAK 526

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIV 603
            D L   +   + D++L  S  G+ Y L   N+    G   GE +   + +  N+ I+
Sbjct: 527 NDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGLATGENLSKYLQIPINESII 584


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 337/579 (58%), Gaps = 26/579 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A   +IDN      +  I+++L+ + GPDFPTG  I+  R  I E+YR GRG 
Sbjct: 187 NLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHIL-GRAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +E +  G   IVVTE+PY V K+RLIE IA+++  KRI  + ++RDES  + 
Sbjct: 246 IIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDESNRNG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P ++++ ++  + ++T F  NM  L +   P VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGL-VNNEPVVMNLKQMLGFYLEHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RRS + +   + R  IL+GLL+A   IDE+I+IIR      + K  ++ RFSL + 
Sbjct: 365 NVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLIGRFSLDDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++ E D+L    +++  +L   K+    I  EI  +++ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEILGDIKKLLGVIKEEINVIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
                   RR+   ++   D       +I  E   + ++N G+I+ + + +         
Sbjct: 485 GDE-----RRS---QIVADDSDITNDDLIPDENTVIAMTNMGYIKRMTTDNFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  +   E D ++  L   T   IL  +  G+ Y L A
Sbjct: 537 GIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKA 575


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/585 (39%), Positives = 345/585 (58%), Gaps = 34/585 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPH
Sbjct: 5   YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVD 148
           GD +VYD+LVR+AQ F  R PLI+G GNFG+ID D AAA RYTE R+  +A   +L+ ++
Sbjct: 65  GDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALLRDIE 124

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT+IP HN+ EI +   ALI 
Sbjct: 125 SETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVTALIH 184

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265
           NPEI+I++L+++I  PDFPTG  I+  R  I ++Y  GRG   +R    +E +   GR  
Sbjct: 185 NPEITIKELMQFIPAPDFPTGAQIL-GRSGIKDAYMTGRGSITMRGVAEIETLRQNGREK 243

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+VT++PYQ  K+ LIE+IA+++  K+I  + DIRDES  + +RIV+  K R   P +
Sbjct: 244 EAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELK-RDAYPRV 302

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F  NM  L  G  PQ++ L   L+ +L  R EV+ RR+ + ++   
Sbjct: 303 VLNNLYKHTPLQANFGANMLALVNGE-PQLLNLKQFLQVFLDFRVEVITRRTRYELRKAQ 361

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GLLIA  N+D +I +IR        +  ++  ++L++ Q DAIL ++LR L  
Sbjct: 362 ERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMDGYNLSQAQADAILQMQLRRLTA 421

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I++E  +LL +   ++ +L   ++ +  I  E+ E+K I         RRT    
Sbjct: 422 LEADKIEAEHQDLLLKITDLEDILARRERVYAIIEAELTEIKTIHQSD-----RRTELV- 475

Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLK 552
               D   LQ   +I  E   ++++ +G+I+ +   + D         +A   KE D + 
Sbjct: 476 ---LDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQNRATRGKAATKMKEDDGVD 532

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRGHGEAIQLL 593
             L     D +L  +  G  Y+L A  +     + RG   AIQLL
Sbjct: 533 HFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGL-PAIQLL 576


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/738 (34%), Positives = 412/738 (55%), Gaps = 43/738 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+E YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSARIVGEV+GK
Sbjct: 11  LKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGEVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTEAR+ ++AE +L+
Sbjct: 71  YHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIAEELLE 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V+  D ++    EP V PSKFPNLLANG++GIAVGM T+IP HN+ E+    +A
Sbjct: 131 DIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELVNGLIA 190

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI NPEISIE+L+ +I GPDFPTGG I+  +  I E Y  G+G F +R +  VEE  +  
Sbjct: 191 LIKNPEISIEELMNFIPGPDFPTGGEII-GKSGIREMYTTGKGSFTIRGKVHVEEK-KKK 248

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             IV+TEIP+ + K+ LI+KI E      +P ++DIRDES  E +RIV+   N + + ++
Sbjct: 249 KNIVITEIPFNISKADLIKKIVEYAEKSSLP-IKDIRDESDKEGLRIVIEIPNDT-NEEI 306

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ RR+ +  +   
Sbjct: 307 IINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYKQYS 366

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPV--MVSRFSLTENQVDAILNLRLRSLRK 441
           ++  IL+GL+ A  +ID II++IRN ED+   +  ++  F+ TE Q  AI++LRL  L K
Sbjct: 367 KKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELIDMFNFTETQAKAIVDLRLGRLTK 426

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRR 496
           LE  ++  + ++L+ + +    L+ + ++ + +I  E+  +K  +  S      D   R+
Sbjct: 427 LEISKLIDDYNDLVNKMKVEKELIENDQKVYEKIIEELEAIKSEYGDSRKSIILDHEERK 486

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEG 548
             F E+           +I  + + + ++ +G+++  SL +          ++  +  + 
Sbjct: 487 IEFNELE----------LIPDKEVVLSLTKKGYLKMMSLDTFKTQRRGGKGVTGSNLMDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D++   ++ H   + L  ++ GK Y L    +   S    G  I   +++  ++ I+T  
Sbjct: 537 DAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGRQIAKYLNIGQDEKILTML 596

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
             D+   +L  V+  G A      E      +G   +    ++ +  V K+   D   ++
Sbjct: 597 SVDNFEGELFFVTKNGKAKRTSLKEFENINSRGMKAITFDGDDLLVSVQKIDNPDQTILI 656

Query: 665 GENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                L I F I ++  M R      G+RL S  D  +S  +       L  + S G  Y
Sbjct: 657 ATKNGLCIRFPISEVRTMGRNAMGVIGIRL-SNDDAVVSSSLLMDDEHYLLTVTSKG--Y 713

Query: 720 NRSENDLLGWLGKRGGVG 737
            +        + KRGG+G
Sbjct: 714 GKLTETSQYRIQKRGGLG 731


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 344/610 (56%), Gaps = 70/610 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLGN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR------------ 420
           +L+GL +A  NIDE IAII+    P         KP        M++R            
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGGRS 422

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   + 
Sbjct: 423 AYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADLL 482

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I  E+  VK  F      G  R +  E++  +  T  + +I  + + V
Sbjct: 483 DILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--EDLITPQDMVV 534

Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
            +S+ G++        R+ K       A   KE D ++    A+T D IL  S  G    
Sbjct: 535 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 594

Query: 571 -KAYTLPAGN 579
            K Y +P G+
Sbjct: 595 VKVYEVPQGS 604


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/727 (34%), Positives = 390/727 (53%), Gaps = 65/727 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   +   YL YA+S I  RAIPDLRDG KPVHRRI++ + E G      ++K    
Sbjct: 12  SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F     LI GQGNFG++DGD  AAYRYTE R+ +
Sbjct: 72  VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            AE +L  +++D VDF   Y  E  EP V P+++PN+L NG  GIAVGMAT IP HN+ E
Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP+++ E+L+++I  PDFPTGG+I+  R    ++Y  GRG   +R +   
Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLIL-GRSGARKAYTEGRGSVVIRCKTRT 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
           EE+ +  + IV+ EIPYQV K+ +IE+IAE    KRI  +  ++DES    VR+V+  K 
Sbjct: 251 EEIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++  +F  + M+  F  NM  L+ G+ P+ + L G L  +L  R +V+ +R++
Sbjct: 310 RDATPEVVLNQLFRFTPMQVSFACNMLALNGGK-PETLTLRGFLTAFLDFREDVVAKRTA 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           F +     R  IL GL +A  N+DE++A IR+                            
Sbjct: 369 FELNKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLI 428

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L++ QV AIL+LRL+ L +L   ++  EL+ L A+  +   +L S 
Sbjct: 429 DDPTHKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSR 488

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++  + ++ E+REV+E  +       RRT   + S        + +IE+E + V ++  G
Sbjct: 489 ERILSIVSDELREVRERHAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTQGG 540

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS K     LS    KE D +     A+T  ++L  +TDG  Y L    L
Sbjct: 541 YIKRTALADFRSQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 600

Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
            L GR   G+AI  ++ +     I      D          ++  +S G+      S+  
Sbjct: 601 PLGGRTSRGKAIVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFT 660

Query: 633 ANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQI----PEMSRG- 684
              R GK  +K+  +  + LV   +    D V +V +  + + F +  +       S G 
Sbjct: 661 NVMRNGKIAMKLPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGV 720

Query: 685 KGVRLQS 691
           +G+RLQ+
Sbjct: 721 RGIRLQN 727


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 337/571 (59%), Gaps = 34/571 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +KK AR+VGEV+GK H
Sbjct: 77  EAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFH 136

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGD +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE R+  + E ++L  
Sbjct: 137 PHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEALTEAMLLAD 196

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+IP HN+ E+ +    L
Sbjct: 197 LEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVDVLCVL 256

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS- 265
           I NPE ++++LLEY+ GPDFPTGG+I+     I+E+YR GRG   VR +  VE +   + 
Sbjct: 257 IRNPEATLQELLEYMPGPDFPTGGLIM-GNIGILEAYRTGRGRIIVRGKTEVELLDSKTK 315

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES      ++    R  DP +
Sbjct: 316 RTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGSDPSI 375

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  V+ RR+ F++    
Sbjct: 376 VLNKLYRLTALQSSFSCNMIGILDGQ-PKLMGLKELLQAFLDFRCSVVERRARFKLSQAQ 434

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFSLTENQVDAILNLRLRSL 439
            R  I++G+++   N+D +I +I+  + P   M S      F L+E Q +AIL++ LR +
Sbjct: 435 ERRHIVEGIVVGLDNLDAVIRVIK--EAPSNAMASTGLRNEFGLSERQAEAILDISLRRI 492

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  FS       RR+  
Sbjct: 493 TRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTP-----RRSML 547

Query: 500 CEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDS 550
            +    D   L+   +I  E + + +S +G+++ +K ++ +L        S    +  D+
Sbjct: 548 EDT---DSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 604

Query: 551 LKIALHAHTTDRILLLSTDG-----KAYTLP 576
           +   +  H  D +L  S  G     +AY +P
Sbjct: 605 MSDFIVCHAHDYVLYFSDRGIVHSARAYKIP 635


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 276/812 (33%), Positives = 423/812 (52%), Gaps = 97/812 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L ++ NPE SI++L+E I  PDFPT GII      + + YR GRG   +RA+   E
Sbjct: 191 VDACLHMLRNPETSIDELMEIIPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLIVVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAIIRN   P PV                 M++R 
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRSWDSKLVREMLTRT 427

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 428 RADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A  E +  +L   ++    I  E+  +K+ F +   LG RR +  E S  D +T  +
Sbjct: 488 EVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHK-LGARR-SIIEYSAQDLST--E 543

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL
Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYIL 603

Query: 565 LLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTA--FV 607
             S  G+ Y L     PAG+  S RG           GE I +++ L  +     A  FV
Sbjct: 604 CFSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRFV 662

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVV 664
           +  T    V  +  + F        +N RKG   + V+ ++   L+      G H V + 
Sbjct: 663 FMGTSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGKHDVMLF 713

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNR 721
            +  K + F  + +  + R  +GVR    +DG    VI   + E  T   + +    Y +
Sbjct: 714 SDGGKAVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGK 771

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +      RG  G +  +   R+GK +++
Sbjct: 772 RTSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/757 (34%), Positives = 416/757 (54%), Gaps = 43/757 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   +   Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+GL  G ++KK+A
Sbjct: 16  VRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKAA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VYD++VRL Q F  RYPLI GQGNFG++DGD+ AA RYTE R+
Sbjct: 76  RIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A+ +L+ +D++ VD    ++E   EP + P+  PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 136 AKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A L L+++P+ + ++L+  + GPDFPTG  I   R  I ++Y  GRG  R+RA+ 
Sbjct: 196 SETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIY-GRTGIRDAYLTGRGLIRMRAKA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315
            VE+       I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  E +RIV+  
Sbjct: 255 FVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIEL 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K     P +L   +F  + M++ F   M  L  G+ P+V+ L   L  ++ HR+ ++ RR
Sbjct: 315 KKEQPAPPIL-NQLFKHTAMQSTFGAIMLALVEGQ-PKVLALKEALSHFIEHRKTIVIRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+G  IA  ++D +IA+I   R+ D  +  ++ +F +++ Q  AIL
Sbjct: 373 TRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQFGMSQIQAQAIL 432

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRL+ L +LE  +I+ E    +A  E+  ++L S       I  E+  +KE +    DL
Sbjct: 433 ELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEALVCQIIKEELLAIKETYG---DL 489

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
            R                 + M+  E + + I++ G+I        RS +     ++ + 
Sbjct: 490 RRTEILEETTE-----IELEDMLADEEMVIPITHGGYIKRSNLNAYRSQRRGGKGMTGMA 544

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KE D ++    A T   +LL +  GK + L    L  L     G+A+   + L   + I
Sbjct: 545 TKEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKGKALANFLQLGVGEQI 604

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEEKMKLVVKV 656
            T      ++    LL+ + +G   IV+++E+ A  N R G    + +   +++  V   
Sbjct: 605 TTVIPIRQFEVDRYLLMATRRG---IVKKTELNAYGNPRAGGIIAITLDGGDELIAVRLT 661

Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTW 711
            GD   ++G  + + I F  D++    R     KG+ L+    GG   V    + +G   
Sbjct: 662 KGDDEILLGTRQGMAIRFKEDEVRSAGRAARGVKGISLE----GGDEVVGAEVVAQGAAV 717

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +    R Y +  +     L  RGG G +  +   R+G
Sbjct: 718 LTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRNG 754


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/452 (44%), Positives = 307/452 (67%), Gaps = 7/452 (1%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KSA +V
Sbjct: 11  VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEARM+++
Sbjct: 71  GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+  +E
Sbjct: 191 IDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTTIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES  E +RIV+  K +
Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D +++++ ++  + ++  F + M  L +   P+V+ L  +L  ++ H++EV+ RR+ +
Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTRY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL++R
Sbjct: 368 DLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           L+ L  LE  +I+ EL  L+   E   ++L S
Sbjct: 428 LQRLTGLERQKIEEELAELIRMIEYYKNVLAS 459


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 320/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL     F 
Sbjct: 15  EERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+  + EPV  P+ +PNLL NGTSGIAVGMAT++P
Sbjct: 135 ECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  GRG F++
Sbjct: 195 PHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIV-GLAGVRDAYETGRGSFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  + A  +R
Sbjct: 254 RATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLTDRAHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN   +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  ++ RF L++ Q
Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDRFDLSDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLNAEIEELTRILDSDAELRKLVSSELATVGKKFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E + A  A +    +  +P  V++S+ G +
Sbjct: 492 TP-----RRTVLLESADAPVAAVPLE-VADDPCRVLLSSTGLL 528


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/737 (33%), Positives = 396/737 (53%), Gaps = 82/737 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +M E        + K 
Sbjct: 15  DIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHEQNHTPDRPYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 75  ARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D D VDF+D Y+ ++ EPVV P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNPE++IE+L+ Y+ GPDFPTGG I+  R  I  +Y  GRG    RA+
Sbjct: 195 LGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAIL-GRTGIQSAYLTGRGSVLTRAK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE + +    ++VTEIPYQ+ KS L+EKIA+L+  KR+  + D+RDES  D   ++  
Sbjct: 254 VEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLRDESDRDGMRIVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F  NM  L+ GR P+++ L   L  ++  R EV+ RR
Sbjct: 314 LKRDAVAEVVLNQLWRYTALQSSFACNMIALNGGR-PEMLTLKDFLTAFVDFREEVVTRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------NEDKPKPV 416
           + + +        +  GL IA  NIDE+I +IR                   ++  P  +
Sbjct: 373 TKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMARSWPAHDMAPLVL 432

Query: 417 MVS--RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +++  R  L+EN        Q  AIL LRL+ L  L   +I   L+ L  E      +L+
Sbjct: 433 LIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKLAVEIADYLEILH 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++ ++ +  E+  VK   +       RRT   + +        + +I++E + V +S+
Sbjct: 493 SRERLFSIVKEEMLAVKAAHATP-----RRTIILDSA---TGVDDEDLIQREDMVVTVSH 544

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574
            G++        R+ +      SA+  ++ D +     A T   +L  S+ G+ Y     
Sbjct: 545 HGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYKEKVW 604

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627
            LP   L + +  G+A+  ++ L   + I T           +T  ++  +++G     +
Sbjct: 605 RLP---LAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRNK 661

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGV 687
            S+     R GK  +++   E++          V + GE+  +L+ +       ++G+ +
Sbjct: 662 LSDFAQVNRAGKIAMRIDEGEEIV--------DVQICGEDADVLLTT-------AKGQCI 706

Query: 688 RLQSYKDGGISDVICFK 704
           R        ++DV  FK
Sbjct: 707 RFP------VTDVRVFK 717


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 28  VEPVQLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 87

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 88  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 147

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 148 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 207

Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+    L+E I GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 208 REVAAGAQWYLEHPEASHEELQDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 266

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 267 RAVVAVEEI-QGRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 325

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 326 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 383

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 384 VIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 443

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + E F 
Sbjct: 444 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRGIVSEELAAIVEKFG 503

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D +   + +I +E I V IS  G++        RS K     
Sbjct: 504 DD-----RRSKLVPFE-GDMSI--EDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 555

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 556 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 615

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        Y++   L++ +  G
Sbjct: 616 PDEKIAQILAIRDYEAVPYLILATKGG 642


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 347/571 (60%), Gaps = 28/571 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIV
Sbjct: 13  VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M+++
Sbjct: 73  GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+
Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+  +E
Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  E +RIV+  + R
Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+ F
Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
            ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL+LR
Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E   L+A       +L + +++ NQI  +  E+ EI +K  D  R 
Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK-IA 554
                ++S  +   L +         V +++ G+++ L    VD      + G  +K + 
Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRL---PVDEFKAQNRGGRGVKGMG 539

Query: 555 LH----------AHTTDRILLLSTDGKAYTL 575
           +H          + T D +L  +  GK + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAM 570


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/596 (40%), Positives = 340/596 (57%), Gaps = 57/596 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E G      ++KSAR+V
Sbjct: 17  VTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKPYRKSARMV 76

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DGD  AA RYTEAR+   
Sbjct: 77  GDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRYTEARLADA 136

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GIAVGMAT+IP HN  EI
Sbjct: 137 AMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNIPPHNPAEI 196

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++  GRGG  VRAR  +E
Sbjct: 197 IDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAFETGRGGIVVRARTSIE 255

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RDES  E +R+V+  K R
Sbjct: 256 EIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRMVIELK-R 314

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F +NM  L  GR P+ + L   L  ++A R +V+ RRS F
Sbjct: 315 DATPEVVLNHLYRFTQMQTGFGINMLALDGGR-PRQLGLRDALDCFIAFREDVILRRSRF 373

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------NEDKP----KPVMV--- 418
            +     R  +L GL IA  NIDE+IA+IR               D P    +P++    
Sbjct: 374 ELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPLLELID 433

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LTE Q   IL LRL+ L  LE  +I+SEL  +     +I  LL    
Sbjct: 434 DHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV---GRRIGELLEI-- 488

Query: 470 QQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                IA   R ++    E+ +    +   R T  E S AD+    +++IE   + V ++
Sbjct: 489 -----IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQD--DESLIEPGQMVVTMT 541

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             G+I        R+        +A   +  D +  + +AHT   +L  S  GKA+
Sbjct: 542 RDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAF 597


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 347/571 (60%), Gaps = 28/571 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIV
Sbjct: 13  VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M+++
Sbjct: 73  GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+
Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+  +E
Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  E +RIV+  + R
Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+ F
Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
            ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL+LR
Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E   L+A       +L + +++ NQI  +  E+ EI +K  D  R 
Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK-IA 554
                ++S  +   L +         V +++ G+++ L    VD      + G  +K + 
Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRL---PVDEFKAQNRGGRGVKGMG 539

Query: 555 LH----------AHTTDRILLLSTDGKAYTL 575
           +H          + T D +L  +  GK + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAM 570


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 262/748 (35%), Positives = 400/748 (53%), Gaps = 94/748 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLHNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRNWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L     +  +I   I  V+E+     + G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDIL----ARPERITAII--VEELTLIRAEFGDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDS 610
            S  G+ Y L     P G+  S RG           GE I +++ +    +    FV+ S
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNS-RGRPIVNMFPLSPGEKINVILPVKQFDE--QHFVFMS 656

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668
           T K  V  +    F        +N RK         E    +   +T G H V +  +  
Sbjct: 657 TSKGTVKKTALTEF--------SNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAG 708

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           K + F  + +  M R  +GVR  + ++G
Sbjct: 709 KAVRFDENDVRPMGRQARGVRGMNLEEG 736


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/568 (37%), Positives = 344/568 (60%), Gaps = 22/568 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIV
Sbjct: 8   VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M+++
Sbjct: 68  GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+
Sbjct: 128 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+  +E
Sbjct: 188 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  E +RIV+  + R
Sbjct: 247 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 305

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+ F
Sbjct: 306 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 364

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
            ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL+LR
Sbjct: 365 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 424

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E   L+A       +L + +++ NQI  +  E+ EI +K  D  R 
Sbjct: 425 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 481

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
                ++S  +   L +         V +++ G+++ L              +  +    
Sbjct: 482 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMGVHS 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL 575
            D ++  + + T D +L  +  GK + +
Sbjct: 538 DDFIEHLVASSTHDLLLFFTNTGKVFAM 565


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/612 (37%), Positives = 349/612 (57%), Gaps = 67/612 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E +  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLKNPEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARAWDSSLVREMLSRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L     +  +I   I  V+E+ S   + G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDIL----ARPERITAII--VEELTSIKAEFGDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S  L  +S          A   KE D +     A+T D I
Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599

Query: 564 LLLSTDGKAYTL 575
           L  S  G+ Y++
Sbjct: 600 LCFSNRGRVYSV 611


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/608 (36%), Positives = 352/608 (57%), Gaps = 36/608 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+
Sbjct: 7   STDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARV 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQ+VY++LVR+AQ F  R  L+ G GNFG+ID D  AA RYTE R+T 
Sbjct: 67  VGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECRLTA 126

Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            A E +LQ +D + VDF D Y+    EP+V P++ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 127 FAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHNLG 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +ALI NP ++  +L+++I  PDFPTGG+I+  +E I E+Y  GRG   +R    
Sbjct: 187 ELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIM-GQEGIREAYTTGRGSITLRGVAT 245

Query: 258 VEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           VE +   GR +   I++TE+PYQ  K+ +IEKIAEL+  K++  + DIRDES  +   V+
Sbjct: 246 VETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGMRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P +++ +++  + +++ F +NM  +  G  P+ + L   L+ +L  R EV+ 
Sbjct: 306 IELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGE-PRTLTLRDALQAFLDFRAEVIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + +Q  + R  +L+G L+A   +D +IA+IR   +    +  + +   L+E Q D 
Sbjct: 365 RRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQATLGLSEAQADG 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ E++++K  F+   
Sbjct: 425 ILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFASP- 483

Query: 491 DLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540
               RR+      CE+  AD       +IE     + ++ +G+I+ +      +      
Sbjct: 484 ----RRSRLCLEDCELKVAD-------LIENRETVIFLTEQGYIKRMDLEEFQVQGRATR 532

Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
             +    K+ D+++      + D IL  +  G  YTLPA  +  G     G AI  L+ +
Sbjct: 533 GKAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQGSRTARGSAIVQLLPI 592

Query: 597 NHNQDIVT 604
              + + +
Sbjct: 593 TREERVTS 600


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/596 (40%), Positives = 340/596 (57%), Gaps = 57/596 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E G      ++KSAR+V
Sbjct: 17  VTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKPYRKSARMV 76

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DGD  AA RYTEAR+   
Sbjct: 77  GDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRYTEARLADA 136

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GIAVGMAT+IP HN  EI
Sbjct: 137 AMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNIPPHNPAEI 196

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++  GRGG  VRAR  +E
Sbjct: 197 IDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAFETGRGGIVVRARTSIE 255

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           E+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RDES  E +R+V+  K R
Sbjct: 256 EIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRMVIELK-R 314

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F +NM  L  GR P+ + L   L  ++A R +V+ RRS F
Sbjct: 315 DATPEVVLNHLYRFTQMQTGFGINMLALDGGR-PRQLGLRDALDCFIAFREDVILRRSRF 373

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------NEDKP----KPVMV--- 418
            +     R  +L GL IA  NIDE+IA+IR               D P    +P++    
Sbjct: 374 ELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPLLELID 433

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LTE Q   IL LRL+ L  LE  +I+SEL  +     +I  LL    
Sbjct: 434 DHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV---GRRIGELLEI-- 488

Query: 470 QQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                IA   R ++    E+ +    +   R T  E S AD+    +++IE   + V ++
Sbjct: 489 -----IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQD--DESLIEPGQMVVTMT 541

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             G+I        R+        +A   +  D +  + +AHT   +L  S  GKA+
Sbjct: 542 RDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAF 597


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/658 (35%), Positives = 371/658 (56%), Gaps = 29/658 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  ++ YA+S I +RAIPD+RDG KPVHRR ++AM +MG       KKSAR+V
Sbjct: 19  ISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAMWDMGNTSDKPTKKSARVV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+YD++V++AQPF  R+PL+ GQGNFG++DGD+AAA RYTE R+   
Sbjct: 79  GDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSVDGDAAAASRYTEVRLFPY 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D++ V+F   Y+E   EP V PSK PNLL NGT GIAVGMAT +P HN++E+
Sbjct: 139 AEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTDGIAVGMATKMPPHNLREV 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A    +D P + +E+LL+ + GPDFPTGGI++   + +   Y  G+G   VR    +E
Sbjct: 199 CAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILM-GVDGVKNIYATGQGRIVVRGVAEIE 257

Query: 260 EVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   G+    I+VTE+PYQV K++ I  IA+++  K++  + DIRDES +D   V+F   
Sbjct: 258 ESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISDIRDESDKDGIRVVFELR 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +     +++ +++  + +E+ F    N+  +   P+++ L  +L  ++ HR EV+ RRS 
Sbjct: 318 KGTISAVILNNLYRFTALESGFSA-YNLAIVDGTPKLLNLPALLGNFVHHRIEVIRRRSE 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F ++    RV IL GLL A  +ID+IIA IR     D  +  ++S F L E Q +AIL +
Sbjct: 377 FDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALISGFGLDELQANAILQM 436

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L  LE+ +I  E   L AE  K++++L S +   ++I    RE  EI  K    G 
Sbjct: 437 QLRRLAALEQQKIVDEKSTLEAEILKLETILASEENIKDEIR---RETSEIALK---FGD 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK 546
            R T   +  +D +T  + +IE + + V I+   +I+ +   +          ++ +  K
Sbjct: 491 ARRTEITLDASDLST--EDLIEDKTVLVSITTANYIKRMDLDTYRKQRRGGHGITGMTTK 548

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           E D +     A   D +L  +  G+ Y L    +       +   ++  LN   ++VT  
Sbjct: 549 EDDVVSSVFAAGMKDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNLLNLKDEVVTTV 608

Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +    +     LL  +  G    + + E       G   +++   E  KLV  +T D+
Sbjct: 609 IPIREFRKDRYLLFATQLGQVIKIPQDEFSFPRSTGTNAIRL--RENDKLVDVITTDN 664


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 340/582 (58%), Gaps = 34/582 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 20  IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 80  RVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +L+ +DED VDF+D Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 140 APLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 200 REVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE++     R
Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDETSSRTGQR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A  +IDE+IA+IR  D     +  ++   S+ E Q
Sbjct: 376 VVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLMDLLSIDEVQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E   L  +  + +++L S ++Q   ++ E+  + E + 
Sbjct: 436 ANAILEMQLRRLAALERQKILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 496 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           +     KE D +     + T   +L  +  G     KAY LP
Sbjct: 548 VRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E  +A + 
Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   VR +  VE+ G+  
Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323
             IV+TEIPY V K+ LIE+IA++        + +IRDES +  +RIV+  PK+ S   +
Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+ RR+ +  +  
Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            RR  +++GLL A   I  ++ I+RN    +  K  ++    +TE Q  AIL++RL  L 
Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L     + ++   EI + + ++ K      RRT   
Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           E++       ++ +I +E + + +S+ G++        RS K     ++     E D ++
Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             + A  T   L ++  G+AY L    L  +GR   G  I   ++L   + IV     + 
Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601

Query: 611 TCKLLVVSSK 620
               LV+ +K
Sbjct: 602 DGNDLVIVTK 611


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E  +A + 
Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   VR +  VE+ G+  
Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323
             IV+TEIPY V K+ LIE+IA++        + +IRDES +  +RIV+  PK+ S   +
Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+ RR+ +  +  
Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            RR  +++GLL A   I  ++ I+RN    +  K  ++    +TE Q  AIL++RL  L 
Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L     + ++   EI + + ++ K      RRT   
Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           E++       ++ +I +E + + +S+ G++        RS K     ++     E D ++
Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             + A  T   L ++  G+AY L    L  +GR   G  I   ++L   + IV     + 
Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601

Query: 611 TCKLLVVSSK 620
               LV+ +K
Sbjct: 602 DGNDLVIVTK 611


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/651 (36%), Positives = 371/651 (56%), Gaps = 46/651 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A + +ID     N E +IE +L+ I GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L +   P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  ++  F LTE 
Sbjct: 365 EVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIEAFELTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +   +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEILIIDGKY 484

Query: 487 SKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS 537
           S       RRT+      ++S  D       +I ++ + + ++  G+I+     + KS +
Sbjct: 485 SDE-----RRTSIGFDEFDISMED-------LIPRQDVVITMTKLGYIKRMTVDTFKSQN 532

Query: 538 ---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
                +  +   + D ++      T   I+  +  G+ Y L    +   S    G AI  
Sbjct: 533 RGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIIN 592

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637
           L+ L  ++ I TA +    Y     L + + KG   +V+++ I   AN RK
Sbjct: 593 LLQLMPDEKI-TAMIPIDEYKEGQYLFMATKKG---LVKKTPITDYANVRK 639


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/777 (32%), Positives = 418/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A ++ IDN EI IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIERFQLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEILVNDELCRKVIKDELIEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  +  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/629 (35%), Positives = 367/629 (58%), Gaps = 34/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD    +++   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 125 RMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A + N +I+I++L+EYI  PDFPTGGII    + + E+++ GRG   +RA
Sbjct: 185 NLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CIVVTE+PYQV    + E+ + L+   ++  L DI D++ +    +++
Sbjct: 244 KAHFEEVN-GRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L  GR PQ + L  ++  ++ HR +V++R
Sbjct: 303 ELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGR-PQQLNLKDLIYHFVEHRHDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +      D +   I IIR  DKPK  +++ F LTE Q +AI
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLMTEFELTEIQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR + KL   Q K E + LLA+   ++ +L   +++   I  E+ E+K  +     
Sbjct: 422 LALQLRRINKLLILQTKEEYEQLLAQIIDLEDILARKERRTEIIKEELLEIKSKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSAL 543
            G  R +  E +  D +   + +I  + + + ISN G+I+       K+ +   V   A 
Sbjct: 477 -GDERRSVIEYAGGDISI--EDIIPDDQVVITISNAGYIKRTSVNEYKTQARGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D ++          +L  +  GK + L    +  G     G AIQ LI++  + D
Sbjct: 534 ATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPEGGKNTKGRAIQNLINIEPD-D 592

Query: 602 IVTAFV---------YDSTCKLLVVSSKG 621
           +V A +         Y ++  +++ + KG
Sbjct: 593 LVKAVICTHDLKEKDYTNSHYVIMATKKG 621


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/611 (38%), Positives = 369/611 (60%), Gaps = 32/611 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L  +N++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  
Sbjct: 2   SNLLHNDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSH 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGD+AAA
Sbjct: 62  GAKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN QEI     AL+ NP I + +L+E+I  PDFPTGG I   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIF-GKKGIMDAYATGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
             +VRA+  +E+ G     I++ E+PYQV K+RLIE IA L+  K I  + +IRDES  E
Sbjct: 241 RIKVRAKTHIEKKGNKD-IIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDRE 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  K  ++  ++++ ++F  + M+  F + M  + + + P++  +  ILK ++ H
Sbjct: 300 GIRVVIELKKDAM-SEIVLNNLFKQTSMQVTFGIIMLSI-LNQEPRIFGIIDILKHFINH 357

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           R+ ++ RR+ F ++    R  IL+GL  A   IDEII +I   +N ++ +  +VS F  +
Sbjct: 358 RKTIIIRRTIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSEFDFS 417

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q  +I+++RL  L  LE  +I++EL  LL     ++S+L S +     I  E  E+  
Sbjct: 418 VIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEEVLHGIIDQEFDELLT 477

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536
           I+   TD+  RRT   +          + +I  EP+ V I++RG+I+ +        K  
Sbjct: 478 IY---TDV--RRTDVEDDY---DDIDVEDLIPNEPMVVTITHRGYIKRVPLAQYEKQKRG 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591
                A+   E D ++     +T D +L ++  G     K Y +P G   S    G+A+ 
Sbjct: 530 GKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEG---SRTAKGKAVV 586

Query: 592 LLIDLNHNQDI 602
            L++L  ++ I
Sbjct: 587 NLLNLVADEQI 597


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 259/736 (35%), Positives = 398/736 (54%), Gaps = 63/736 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTQPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ + VDF DT++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQIL-GRSGIKDAYISGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R     +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGE-PQILNLKDFLGVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R +V+ RR+++ ++  + R  IL+GLL+A  N+D II +IR   +    K  +V +F 
Sbjct: 360 EFRVQVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQW 472
           L+E Q DAIL ++LR L  LE  +I++E          L ++L  +E++D ++   +++ 
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDILQRRERVDQII---QEEL 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
            Q+            KST    RRT   E    +   +   +I  E   ++++ +G+I+ 
Sbjct: 477 TQL------------KSTHATPRRTQIVE---EEGGIVDIDLIANEQAVILLTEQGYIKR 521

Query: 533 LKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +  ++           S    KE D ++  L     D+IL  S  G  Y + A  + S  
Sbjct: 522 MPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSS 581

Query: 585 --GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
               G  I  ++ +  ++ I     V+ F  D   + LV+ ++            AN R 
Sbjct: 582 RTARGVPIVQMLPIPKDEKITSMVAVSEFTED---QYLVMLTRQGYIKKTALSAYANIRA 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQSY 692
            G   + +S  ++++ V     +   ++G  + + I F  D  Q+  + R  +GVR  S 
Sbjct: 639 NGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVR--SM 696

Query: 693 KDGGISDVICFKICEG 708
           K  G  ++I   I  G
Sbjct: 697 KLKGTDEIISVDILPG 712


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 347/615 (56%), Gaps = 59/615 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ +S+   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G      + 
Sbjct: 24  QDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPDKPYS 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQPF    PL+ GQGNFG+ID D  AA RYTE
Sbjct: 84  KSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT+V   +L  +D+D VDF+D Y+ ++ EPVV P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 144 SRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMATNIPP 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A LA+I++P I+ E L E + GPDFPTG +I+    S  ++   GRG   +R
Sbjct: 204 HNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGALIMGQSGS-RKALMTGRGSVIMR 262

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           ++  +EE   G   I+V+EIPYQV K+ +I KIAEL+  K+I  + D+RDES  + +R+V
Sbjct: 263 SKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNGIRVV 322

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    D+++  ++  S +++ F +NM  L+ GR P++M L  +L+ ++  R EV+
Sbjct: 323 IELK-RDASADVVLNQLYRFSQLQSSFAVNMLALNGGR-PELMNLRKVLEYFITFREEVI 380

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------P 415
            RR+   +     R  +L GL +A  NIDE+I +IR    P                  P
Sbjct: 381 VRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQDMGP 440

Query: 416 VM-------VSRFS------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           ++         R S      L++ Q  +ILNL L  L  L   +I +E   L  +  +  
Sbjct: 441 LIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIAEYL 500

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPI 520
            +L S  +    I  E+ EVKE F+       RR+ F +  V   D     + +IE E +
Sbjct: 501 EILRSRPRILGIIKAELAEVKEKFAVP-----RRSQFVDGGVDMED-----EDLIEVEDM 550

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570
            V +++ G++        R+        S +  K+ D +     A T   IL  S+ G  
Sbjct: 551 VVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGMV 610

Query: 571 ---KAYTLPAGNLLS 582
              K + LP G   S
Sbjct: 611 YKEKVWRLPIGGPTS 625


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/661 (35%), Positives = 387/661 (58%), Gaps = 41/661 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +R+T+  E     K  +++ ++E E + + +SN G+ +  +LKS+   S 
Sbjct: 488 ETYN-----DKRKTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642
           IDL  ++ I+ AF + D T +  +L ++  G       + F    ++I+A   +KG++ +
Sbjct: 602 IDL--SETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659

Query: 643 K 643
           K
Sbjct: 660 K 660


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/750 (34%), Positives = 400/750 (53%), Gaps = 112/750 (14%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL Y++S I  RA+PD+RDG KPVHRR++ AMSE+  D+  ++KKSAR+V
Sbjct: 15  VNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKSYKKSARVV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 75  GDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMRKI 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  IL  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 135 SHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLNEV 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LALIDNP+I+I++L+E I GPDFPT  II   R  IV++YR G+G   +R+R  VE
Sbjct: 195 VTACLALIDNPDITIDELIEIIPGPDFPTAAII-NGRAGIVQAYRTGKGRIYIRSRAVVE 253

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              + G   I+++E+PYQV K+RLIEKIAEL+  K+I  + ++RDES +D   V+    R
Sbjct: 254 TNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDESDKDGLRVVIEMKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++ + +++  + +E  F +N+  L  G+ P+++ L  +L+ ++ HRREV+ RR+ +
Sbjct: 314 GEMGEVCLNNLYSQTQLENVFGINIVALVDGQ-PRLLNLKQLLEYFVRHRREVVTRRTVY 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  +L+GL +A  NID +I +I++ D                     M++R  
Sbjct: 373 LLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQGWELGDVSQMLARAG 432

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+  QV AIL++RL+ L  LE  ++  E    L E  + 
Sbjct: 433 ESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHEKLLKEYQEKLEEIAEY 492

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            S+L    +    I     E+  I ++  D   RR+   E +R   A   + +I +E   
Sbjct: 493 LSILGDAVKLMTVIR---EELDAIVNEYGD--ERRSEIIESTRDLTA---EDLITEEDRV 544

Query: 522 VVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS+ G+ +  SL  +          SA   K+ D ++  + A T D IL  S  GK Y
Sbjct: 545 VTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILCFSNVGKVY 604

Query: 574 TL---------------PAGNLL--------------------------SGRGHGEAIQL 592
            L               P  NLL                          +  G  +  +L
Sbjct: 605 WLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGHYIFMATANGTVKKTEL 664

Query: 593 L------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKG 638
                        ++L     ++   V + TC +++ SS G A    E+++  +  T KG
Sbjct: 665 TNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNENDVRAMGRTAKG 724

Query: 639 KTFLKVSSEEKM-KLVVKVTGDHVAVVGEN 667
              ++++  +KM  L+V   G  +  V EN
Sbjct: 725 VRGIRMADGQKMISLLVPKDGGRMLSVSEN 754


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/772 (32%), Positives = 424/772 (54%), Gaps = 47/772 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++  ++ HR +
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645
            + D V A++         Y ++  +L  +  G   +++++ +   +R    G   + + 
Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700
            ++++  V    G++ + +   N + + F    +  M R   GVR  +  D G  +V   
Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           IC K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/761 (33%), Positives = 414/761 (54%), Gaps = 66/761 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KSA
Sbjct: 4   IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ + HPHGD S+YD++VRL Q +  RY L+  QGNFG++DGD AAA RYTEARM
Sbjct: 64  SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VAE IL  ++++ VD +  Y+E  +EP V PS  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 124 TKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALIDNP I++++++ ++ GPDFPTGG I  ++  I E+Y  G  G +VR + 
Sbjct: 184 TEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI--AKVGIREAYATGHAGLKVRGKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314
            +EE   G   I+++EIPYQ+ K+ L++ I+ +  A +IP +  +RDES   E VRIV+ 
Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301

Query: 315 PKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            K  +     L++  ++  + +++ + + MN+  +   P+V+PL   ++ +L HRR+V+ 
Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDVVT 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  +L+GLL A  +IDE+I++IR  +   + +  +++RF L+E Q  A
Sbjct: 361 RRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +++ E D L     +++S+L   K  W +I  EIR++++ +  + 
Sbjct: 421 ILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDA- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
               RR+   E+   ++   ++ +I  E + + ++  G++        R  K      S 
Sbjct: 480 ----RRSVITEL---EEDINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AG---------NLLSGRGHG 587
              +E D+        T D +L  +  G     K Y LP AG         NLL G    
Sbjct: 533 GKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDD 592

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSS 646
           E I  ++ ++   D   +F++ +   ++  S   +   +  + +IA N + G   + V  
Sbjct: 593 ENIASVLSVS-GFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVD- 650

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
                  ++  GD V +  +N + + F    + +  R                VI  ++ 
Sbjct: 651 -------IQQDGDDVVLATKNGQAMRFEATLVRDTGR------------ATQGVIGIRLR 691

Query: 707 EGLTWIDSAGRSYNRSENDLLG----WLGKRGGVGSLVPKG 743
           EG   +  A    N  E +LL      LGKR  V     KG
Sbjct: 692 EGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYPSKG 732


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/466 (45%), Positives = 296/466 (63%), Gaps = 42/466 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++ L+ ++  F +NM  LS G+ P+++ L  IL  ++ HRREV+ R
Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418
           R+ F ++    R  IL+ L IA  NID II +IR    P                   M+
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424

Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLE 443
            R                     + LTE Q  AIL+LRL+ L  LE
Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLE 470


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/638 (38%), Positives = 365/638 (57%), Gaps = 63/638 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KKS
Sbjct: 7   SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI++P +SIE+L+EYI GPDFPT   I   R+ I+++Y  GRG   +R++
Sbjct: 187 LTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASI-NGRKGIIDAYNTGRGRAIMRSK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+ 
Sbjct: 246 AEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRREV+ R
Sbjct: 306 IK-RGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408
           R+ F ++    R  +L+ L IA  NID IIA+I+                          
Sbjct: 364 RTVFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGML 423

Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +D  +P        +   ++ LTE Q  AIL LRL  L  LE  +I +E + LL  
Sbjct: 424 EKAGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELL-- 481

Query: 458 KEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                 +L +G     +    + EV  +E+       G  R T    +  D +   + +I
Sbjct: 482 ------VLIAGLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSL--EDLI 533

Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +S+ G+ +        + +      +A   K+ D ++  L A+T D IL  S
Sbjct: 534 NEEDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593

Query: 568 TDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIV 603
             GK Y L    L L+ R   G  I  L+ L+  + I 
Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGEHIT 631


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/633 (36%), Positives = 358/633 (56%), Gaps = 35/633 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      
Sbjct: 15  VIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERG 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RY
Sbjct: 75  FYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 135 TECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLINGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A   +++PE   E+LLE +I    GPDFPTG ++V  R+ I E+YR GR
Sbjct: 195 PPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV-GRKGIEEAYRTGR 253

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++ 
Sbjct: 254 GSITMRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSS 312

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+
Sbjct: 313 RTGQRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWV 370

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    
Sbjct: 371 THQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMGLLE 430

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  +
Sbjct: 431 IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAI 490

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
            E +        R+T        D     + +I +E I V ++  G++        R+ K
Sbjct: 491 VEKYGDD-----RQTKLVPY---DGDMSIEDLIAEEDIVVTVTRGGYVKRTKTDDYRAQK 542

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592
                +     KE D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  
Sbjct: 543 RGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVAN 602

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           L+    ++ I        YD+    LV+++KG 
Sbjct: 603 LLAFQPDEAIAEILAIRDYDA-APYLVLATKGG 634


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 324/511 (63%), Gaps = 16/511 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 19  MQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPYKKSARIVGDVLGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RY ++ G GNFG+IDGDS AA RYTE RM ++AE +L+
Sbjct: 79  YHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYTEVRMAKIAEAMLE 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF   Y+E   EP V PSK P LL NG++GIAVGMAT+IP HN+ E+    + 
Sbjct: 139 DIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIPPHNLCEVVNGLVM 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++ I +L+  I GPDFPTG  I+  +E I  +Y  GRG  ++RA+  +    +G 
Sbjct: 199 LIDNPDVEIPQLMTAIKGPDFPTGACIL-GKEGITSAYNTGRGVVKIRAKAEIVPANKGK 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323
             IV+TEIPYQV K+ LI+ IA L     I  +  + D S+  + ++IV+  K+ ++ PD
Sbjct: 258 HHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMKIVVELKSDAV-PD 316

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  + +++ F + M  L  G+ P+V+ L  +L+ +L H+++V+ RR+ + +   
Sbjct: 317 VVLNRLYKHTALQSSFGIIMLALVNGQ-PRVLNLKQVLEYYLEHQKDVITRRTRYELGKA 375

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R  IL+GL IA  NID +I+ IR     +  +  ++  F L++ Q  AIL++RL+ L 
Sbjct: 376 KDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMENFKLSQRQAQAILDMRLQRLT 435

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  +I  E  +LL   + ++S+L    +  N I  +++E+K+ F        RRT   
Sbjct: 436 GLERKKIDEEYVDLLETIDWLESVLADEHKVMNIIKEDLQEMKKRFGDE-----RRT--- 487

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           E+S        + +I +E I V IS++G+I+
Sbjct: 488 EISIDSSEMDIEDLIAEEDIVVTISHQGYIK 518


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 252/738 (34%), Positives = 409/738 (55%), Gaps = 48/738 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +  + LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L  ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A +A+I NPEI+  +L++Y+ GPDFPTG  I+ +  +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGT-SAIREAYTTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E V   GR     I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES
Sbjct: 241 ITMRGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + ++  F  NM  L +   PQV+ L   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLAL-VNSEPQVLTLKQFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA   +D II +IR+  D P  K  +++ + 
Sbjct: 360 DFRIESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELITTYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E D L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDILARRERVLEIIETEVAQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K  F+       RRT        +     + +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTNFATP-----RRTVILP---GEGELDDRDLIANEKAIILVTEQGYIKRMPVNTFEAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                 +A   K+ D+++  L     D IL  S  G     +AY +PA +  S    G  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASSRTS---RGTP 588

Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
           I  ++ +   + I +    D  S+ + LV+ +KG    ++++E+ A +  +    + +S 
Sbjct: 589 IVQMLPIPKEEKITSIVPVDEFSSEEYLVMLTKGGN--IKKTELAAFSHIRANGLIAISL 646

Query: 647 EE--KMKLVVKVTGDHVAVVGENRKLLI---FSIDQIPEMSRG----KGVRLQSYKDGGI 697
           EE  +++ V +   +   ++G    + I    + +Q+  +SR     K ++L++  +   
Sbjct: 647 EEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKLKNKDELVG 706

Query: 698 SDVICFKICEGLTWIDSA 715
            D++   I E L  +  A
Sbjct: 707 MDILPAAILETLDIVTEA 724


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/743 (34%), Positives = 393/743 (52%), Gaps = 67/743 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  VSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ +P++ I +L+  I  PDFPT GII      I + Y+ GRG   +RAR   E
Sbjct: 191 IDACLLLLRDPDVDIAELMACIPAPDFPTAGIIY-GISGIKDGYQTGRGRVIMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ +G+   I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    R
Sbjct: 250 ELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDHFLRHRREVVTRRTLF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  +L+GL +A  N+DEIIA+I+    P   K  +++R               
Sbjct: 369 ELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVEEMLLRAM 428

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L++ Q  AIL+LRL+ L  LE+ +I SE   +L +  
Sbjct: 429 IDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYREILDKIR 488

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L + ++    I  E+  +K  F       RR     +    +     + +I    
Sbjct: 489 DLLDILANPERITTIIVEELTAIKGQFGDP----RRSEVVIDAQNLNT----EDLITPAD 540

Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+I        R+ K       A+  +E D +     A+T D IL  S+ G+
Sbjct: 541 MVVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGR 600

Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIV 626
            Y +   N+  G     G  +  L+ L  N+ I        +D T  + + ++ G     
Sbjct: 601 VYWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFDDTRYVFMSTAGGTVKKT 660

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI-PEMSRG 684
             SE       G   + +   + +  V    G H V +  +  K + F  + + P     
Sbjct: 661 PLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNA 720

Query: 685 KGVRLQSYKDGGISDVICFKICE 707
           +GVR    K G    VI   + +
Sbjct: 721 RGVR--GMKLGAGQQVISLLVAD 741


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/581 (38%), Positives = 338/581 (58%), Gaps = 29/581 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 21  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 81  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 141 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++NPE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 201 REVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++     R
Sbjct: 260 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+AH+ E
Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E F 
Sbjct: 437 ANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKF- 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                G  R T       D +   + +I +E I V ++  G+I+  K+            
Sbjct: 496 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +     KE D +     + T   +L  +  G+ Y + A  L
Sbjct: 549 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYEL 589


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 348/612 (56%), Gaps = 67/612 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLKNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L     +  +I   I  V E+ S   + G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S  L  +S          A   KE D +     A+T D I
Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599

Query: 564 LLLSTDGKAYTL 575
           L  S  G+ Y++
Sbjct: 600 LCFSNRGRVYSV 611


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/726 (34%), Positives = 400/726 (55%), Gaps = 60/726 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           E ++ V++   +  R+L YA+S +K RA+PD+RDG KPV RRI++AM  ++ L       
Sbjct: 3   ETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKKAL 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHGD ++Y++LVR++Q +V R PL+ GQGNFG++DGD  AAYRYTE
Sbjct: 63  KCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++T+ AEL+L  + +D VD   +Y+    EP V P++FPNLL NGT+GIAVGMAT IP 
Sbjct: 123 AKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A   LIDNP+ ++  LL+ I GPDFP GG I+  R ++ + Y  G G  +V+
Sbjct: 183 HNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIKVQ 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E++ RG   IVVT IPY V K  L   I  +I  +++P L    +ES E   +R+
Sbjct: 243 AEWKEEKIDRGVQ-IVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGLRL 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQ-VMPLDGILKEWL 365
           VL  KN + DP+L+M  ++  ++++  +  NM  L       G  P+  + L  +L E+L
Sbjct: 302 VLEIKNGT-DPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEFL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----F 421
             R   + RR  ++++ + RR+ IL+G  I +  +D  I +IR E   KP    +    F
Sbjct: 361 KFRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIR-ESSGKPDAAEKLKAAF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + QV AIL+ +L  + +LE  +I  EL     + ++I+++L S K+ W  I  E+  
Sbjct: 420 KLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQAKEIETILASEKKLWGVIKSELEA 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E F +     RR+T       +D+  L   ++A I +E   VV++  G I+ +     
Sbjct: 480 LIEKFPE-----RRKTRMA----SDEDVLEFNEEAYIARENTNVVLTKNGRIKRV-GRLA 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
            +     +EGD++   +   T D +   + DG AYT+    + +  G+GE I     L  
Sbjct: 530 SVETTRVEEGDAVAAVVPGSTLDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLAD 589

Query: 599 NQDIVTAFVYDSTCKLLVVSSKG-------------NAFIVE------ESEIIANTRKGK 639
              +V A   D       + +KG             N F++        SE   +T+ G+
Sbjct: 590 GAKVVAAVTTDPRFTPADLPAKGDTPGGPFLVVATRNGFVLRLPLTAFRSE---STKVGR 646

Query: 640 TFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGV---RLQSYK 693
            F+K+   +K+ ++V++ G  + V +      +  F +DQ+  +S  GKGV    L+S  
Sbjct: 647 RFVKLEEGDKV-VMVRLAGAEEGVMLATSGGYVTHFPLDQVSILSGAGKGVIGIELESKD 705

Query: 694 D--GGI 697
           D  GG+
Sbjct: 706 DCLGGV 711


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++N E +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++N E +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/593 (37%), Positives = 352/593 (59%), Gaps = 26/593 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E GL      +K A+IVG+V+G  HPH
Sbjct: 25  YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M ++AE +++ + +
Sbjct: 85  GDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   +++   EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A  A IDN
Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI I++L +Y+ GPDFPTGG+I   R+ I ++++ GRG   VR ++ +E   +G   IV
Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327
            TE+PYQV  + L+ +I EL   K I  + ++ DE+++   +RIV+  K R     +++ 
Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRIVIELK-RGAITKVVLN 322

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  + +++ F +    L  GR P+ + L  ++K ++ HR +V+ RR+ F ++  + R 
Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381

Query: 388 EILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+ L++A  NIDE+I II   R+    K  ++ RF   + Q  AI++++L+ L  LE 
Sbjct: 382 HILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMERFGFDDVQAQAIVDMQLKRLTSLEI 441

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ EL  L      +  LL   ++    I  E  E+ E F      G  R T      
Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556
            ++  ++  +I+KE + ++IS+ G+I+ + + +           ++++  E D L     
Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           A T D I+ ++  GKAY L    +   S    G  I+ L+ ++ +++I TA V
Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVV 606


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 44/709 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  + +D V+F   ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN+ E+  A + +ID     N    IE+LL+ + GPDFPTG  I+  +  I ++
Sbjct: 181 ATNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATIL-GKAGISQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   IVVTE+PY V K+RLI+KIAEL+  K++  + +IR
Sbjct: 240 YRTGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  +F  + M+  F + M  L +   P+++ L  +L 
Sbjct: 300 DESDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSL-VNNEPKILNLFDMLN 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++ 
Sbjct: 359 YYLEHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LT+ Q  AI+++RLR+L  LE  +++ E + L+A+  ++ ++L   K     I  E+
Sbjct: 419 RFALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAILADEKLLLGVIKDEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534
             +++ +        RRT+       D  +++  +I +E   + ++  G+I+     + K
Sbjct: 479 VLIRDKYGDE-----RRTSIG--FDVDDISMED-LIPRENTIITMTKLGYIKRMTVDTFK 530

Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S +     +  +   + D ++      +   I+  +  G+ Y + A  +   S    G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESSRTARGTA 590

Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLK 643
           I  LI L   + I TA +    Y     L + +  G   +V++S I+  AN RK    L 
Sbjct: 591 IVNLIQLQPEEKI-TAVIPINEYKEDHYLFMATKSG---VVKKSPIMEYANIRK-TGLLA 645

Query: 644 VSSEEKMKLV-VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           ++ +E  +L+ VK T +   V +V +N + + F    +  + R   GVR
Sbjct: 646 ITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGVR 694


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 361/610 (59%), Gaps = 27/610 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E  +A + 
Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   VR +  VE+ G+  
Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323
             +V+TEIPY V K+ LIE+IA++        + +IRDES    +RIV+  PK+ S   +
Sbjct: 252 KRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+ RR+ +  +  
Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            RR  +++GLL A   I  ++ I+RN    +  K  ++    +TE Q  AIL++RL  L 
Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L     + ++   EI + + ++ K      RRT   
Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           E++       ++ +I +E + + +S+ G++        RS K     ++     E D ++
Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             + A  T   L ++  G+AY L    L  +GR   G  I   ++L   + IV     + 
Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601

Query: 611 TCKLLVVSSK 620
               LV+ +K
Sbjct: 602 DGNDLVIVTK 611


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 336/535 (62%), Gaps = 18/535 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMGL       
Sbjct: 16  QERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRPDRGHV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS+R+VGEV+GKLHPHGD ++YD+LVR+AQPF  R PL+ G GNFG+ D D+ AA RYTE
Sbjct: 76  KSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSPD-DAPAAMRYTE 134

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+   A L++Q +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP 
Sbjct: 135 ARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGASGIAVGMATNIPP 194

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  AA  L+  P+ ++++L++++ GPD PTGG+I+   ++I E+Y  GRG FR+R
Sbjct: 195 HNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLII-GLDAIREAYETGRGTFRMR 253

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           AR  +E V      IVVTE+P+ V   R++ KI EL+ AK++  + D++D  +  + +R+
Sbjct: 254 ARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLKDLTDRHKGLRL 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K    +P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L  ++ HR EV
Sbjct: 314 VIEVKT-GFNPEAVLEELYRLTPMEETFGINSVALVDGQ-PRTLGLRDLLAVYVNHRLEV 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RRS++R +  + R+ +++GL+ A LNIDE+I +IR  D P   +  ++  F L+E Q 
Sbjct: 372 VRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLMETFGLSEAQA 431

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + ++ +++ E + L AE  +++++L S  +    ++ E+ EV + +  
Sbjct: 432 GYILDTPLRRLTRYDKLELEREKEGLQAEIAELNAILGSEDRLRRVVSKELAEVAKKYGT 491

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
                 RRT   + + A   T     +  +P  V++S+ G I    + + D S L
Sbjct: 492 P-----RRTQLLDSAEAALKTAIPLEVADDPCLVLLSSTGLI----ARTADASPL 537


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/712 (34%), Positives = 407/712 (57%), Gaps = 45/712 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   +++ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +A + +IDN      E ++E++L+ + GPDFPTG +I+  R  I E+YR GRG 
Sbjct: 187 NLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMIL-GRRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLI KIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F +NM  L  + G + P+V+ L  +L+ +LA
Sbjct: 306 MRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLEYYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR   N    K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E  +L+ +  K +++L       + +   IRE  
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRKYEAIL----ADRSLLLRVIRE-- 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           EI + +   G  R T       D +T  + +I +E   + ++  G+I        RS   
Sbjct: 480 EILAIAEKYGDDRKTSIGYDVYDIST--EDLIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +  +   E D ++  L   T   ++  +  G+ Y L A  +  +GR   G AI  L
Sbjct: 538 GGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646
           + L   +  +TA +    ++    L++ +  G   +V+++ I   AN RK G   + +  
Sbjct: 598 LQLMPGE-CITAVIPLRKFEDGHYLMMATKNG---LVKKTPIKEYANVRKNGLAAITLRD 653

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDG 695
           ++++ + VK+T D   ++   +  +     +    S G+   GVR  +  DG
Sbjct: 654 DDEL-IEVKLTDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVRGMNIDDG 704


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/585 (38%), Positives = 342/585 (58%), Gaps = 40/585 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+    EP V P++FPNLL NG++GIAVGMAT+IP H +
Sbjct: 140 APLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHTL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++NPE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 200 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   ++  + D+RDE++     R
Sbjct: 259 RAVVAVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+AH+ E
Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------FSLT 424
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D    V ++R       ++ 
Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT---VEIARGGLRDLLAID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL ++LR L  LE  +I  E D L A+ ++ + +L S  +Q   ++ E+  + E
Sbjct: 433 DIQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGILASPVRQRGIVSEELAALVE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +      G  R T       D +   + +I +E I V ++  G+I        R+ K  
Sbjct: 493 KY------GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTRTEDYRAQKRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
              +     KE D +     + T   +L  +  G     KAY LP
Sbjct: 545 GKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/601 (36%), Positives = 354/601 (58%), Gaps = 31/601 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L  A+ E YL YA+   ++RA+PD+RDG KPVHRRII+    +       + 
Sbjct: 10  DSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVY+S+V LAQ F  R+PLI G GN+G++DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  ++  +D+D VD  D Y+  + EP V P+ +PNLL NG  GIAVG++T+IP 
Sbjct: 130 ARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLSTNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A L  IDN ++++ +L+E + GPD PTGGII+  + S++ +Y  G G   +R
Sbjct: 190 HNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIII-GKNSLIAAYETGEGKVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII----AKRIPLLEDIRDESAEDV 309
           AR  +E +  G   IV++E PY+  K+++++ I+E+      AK +  + DIRDES  D 
Sbjct: 249 ARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDES--DR 306

Query: 310 R----IVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           R    ++ F K+   D  + +++ +F  ++++     NM  L+ G+ P+ M L  I+  +
Sbjct: 307 RGIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGK-PETMGLKTIIGHY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR++++ RR+   + A  +R  I++G + A   +DEII+ IR     K     +V++F
Sbjct: 366 VNHRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVAKF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                Q  AI+ L L  L  LE    K E D L    +K++ +L+  K+    +  E++E
Sbjct: 426 GFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKLIKKLEKILSDEKELLRVVKNELKE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKS 535
           V++ + +      RRT+  E     K  +++  +  E I V +SN G+I+S      L+S
Sbjct: 486 VEKKYGED-----RRTSIVEDDSEAKIDVEEFTV-VEDIVVTMSNDGYIKSVPKKTYLRS 539

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
           +S D+S + ++EGD  +  +  +T   +L+ + +G  Y L   ++     +  GE I  L
Sbjct: 540 NS-DVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKLRGNSIPEYKWKEKGEKIDNL 598

Query: 594 I 594
           I
Sbjct: 599 I 599


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 341/581 (58%), Gaps = 31/581 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +LR  ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL     ++K AR+V
Sbjct: 7   TNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCARVV 66

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD +VYD+LVRLAQ F  RY LI G GNFG++D D  AA RYTE R+T +
Sbjct: 67  GDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRLTPL 126

Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             + +L  ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP H + E
Sbjct: 127 TRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQLGE 186

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +   AL+ NP + I +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +R    +
Sbjct: 187 LVDGVTALLANPNLGIPELMRYIPGPDFPTGGTIL-GQSGIREAYTTGRGSITMRGVAAI 245

Query: 259 EEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           E +   GR     IV+TE+PYQV K+ LIEKIAEL+  KRI  + DIRDES  D    + 
Sbjct: 246 ETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRAVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++ ++F L+ ++T F  NM  L  G  P+++ L   L+ ++  R EV+ R
Sbjct: 306 ELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGE-PRLLNLKEFLQTFIDFRAEVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R  IL G+L+A  N++ +IA+IR  D     +  +V+RF L+E Q +AI
Sbjct: 365 RTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQAEAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  +E  +I++E   L+A+   +  +L   +++ +QI   IR+  E+ +    
Sbjct: 425 LQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLER-RERIDQI---IRD--ELLTAKQR 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SAL 543
           L   R T  E  +A+       +I  + + V+++ +G+I+ L   + D         S  
Sbjct: 479 LNDPRRTIIE--KAEGEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGKSGA 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
             +E D+++  +     D +L  +  G     + Y +PAG+
Sbjct: 537 RMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 259/740 (35%), Positives = 384/740 (51%), Gaps = 76/740 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+    E G   G  ++KSARIVG+ +GK
Sbjct: 28  MKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILWTSHENGFTAGKPYRKSARIVGDAMGK 87

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR+ +VA+ +L 
Sbjct: 88  YHPHGDAAIYDALARMTQDWSMRLPLIDGQGNFGSMDPDPPASMRYTEARLAKVADALLA 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y+  + EP V P++FPNLL NG  GIAVGMAT+IP HN+ E+ +  LA
Sbjct: 148 DIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCLA 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP I +E+L+  I GPDFPT  +I+ +     ++Y  GRG   +RAR  VEE  RG 
Sbjct: 208 YMDNPMIELEELIRIIPGPDFPTAPLILGT-AGARKAYTEGRGSIIMRARHTVEEGRRGD 266

Query: 266 W--CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDP 322
               IV+T IPYQV KS L+EKIAE    KRI  + DIRDES  E VR+V+  K R   P
Sbjct: 267 SRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEGISDIRDESNREGVRVVIDLK-RDATP 325

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+++  ++  +  ++ FP NM  +  GR P+++ L  I++ ++  R EV+ RR+ F +  
Sbjct: 326 DVVLNQLWRNTPAQSNFPANMLAIRGGR-PELLGLKDIIESFVRFREEVITRRTKFELMK 384

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------------- 420
              R  IL GL+IA  N+DE++ IIR    P   +  +++R                   
Sbjct: 385 ARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARERLLAREWPIGEIAPYIRLVEAIED 444

Query: 421 --------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                   + L+E QV AIL+LRL  L  L   +I  EL+ L     +  S+L    + +
Sbjct: 445 DALTGTETYRLSEIQVRAILDLRLHRLTALGRDEIGEELEGLAKAIAEFLSILADRVKLY 504

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530
             +  E+  VK  ++             E++        + +IE++ + V I+  G+I  
Sbjct: 505 GVMREELIAVKAAYATP--------RLSEITAPADGIDDEDLIERDDMVVTITLDGYIKR 556

Query: 531 ------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAG- 578
                 R+        S +  K+ D++     A T   +L  ST GK Y      LP G 
Sbjct: 557 TPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFFSTAGKVYRQKVWRLPEGG 616

Query: 579 ---------NLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
                    NLL     GE I  ++ L  ++ +     V  +T K  V  +  +AF    
Sbjct: 617 AVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFATAKGNVRRNAMDAF---- 672

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR--GKG 686
           + I +N +    F +   +  + + +   GD V +     K + F  D + E       G
Sbjct: 673 ANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTG 732

Query: 687 VRLQSYKDGGISDVICFKIC 706
           VR  + KDG   +VI   I 
Sbjct: 733 VRGMALKDG--DEVISLSIL 750


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/523 (41%), Positives = 323/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 15  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG+SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   +E L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIV-GLTGIRDAYESGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 254 RATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 314 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RFSL+E Q
Sbjct: 372 VVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIERFSLSEVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDAELRKLVSGELAAVAKKF- 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E + +  AT+    +  +P  V++S+ G +
Sbjct: 491 -GTD---RRTVLLESAGSTAATV-PLQVADDPCRVLLSSTGLL 528


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/661 (35%), Positives = 386/661 (58%), Gaps = 41/661 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+K+PN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT   E     K  +++ ++E E + + +SN G+ +  +LKS+   S 
Sbjct: 488 ETYN-----DKRRTAIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642
           IDL  ++ I+ AF + D T +  +L ++  G       + F    ++I+A   +KG++ +
Sbjct: 602 IDL--SETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659

Query: 643 K 643
           K
Sbjct: 660 K 660


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300696|ref|YP_004442617.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 405/706 (57%), Gaps = 55/706 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K AR V
Sbjct: 11  VDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCARAV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+R+ Q 
Sbjct: 71  GDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRLNQF 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  HN+ E 
Sbjct: 131 AQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNLTET 190

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             A +A ID   EI++++L++Y+  PDFPTGG+I    E + E++R GRG   +R +  +
Sbjct: 191 LNACIAYIDARGEITVDELMQYVKAPDFPTGGVIY-GYEGVKEAFRTGRGRIVIRGKADI 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
           EE   G   IV+ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+ + +RIV+  K 
Sbjct: 250 EEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDIK- 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  +  +++  ++  SD+E+ F +N   L  GR P+++ L  ++  ++ HR +V+ RR+ 
Sbjct: 308 KDANAGVVLNYLYKYSDLESYFSVNNIALVHGR-PRLLNLKDLIGHFVDHRHDVVTRRAQ 366

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434
           + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M   +  F+L+E Q  AI+++
Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARAIVDM 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFSKSTD 491
           RLR L KL+  +++ E + L   KE+ID L   L+    +   I  E RE+ + +     
Sbjct: 427 RLRQLTKLDIDKLQHEYNEL---KERIDYLNLFLSDINMRMELIQEECREIIDKYGDE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RR+   E+  A +    +     E + + IS+ G+I        R+     V +   
Sbjct: 482 ---RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGA 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D ++    A     ++L +  G+ Y L     P G   S    G  IQ L+DL+ 
Sbjct: 536 DSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEG---SKSSKGRHIQNLLDLDE 592

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEI-------IANTRK-GKTFLKVSSEE 648
            ++ VTAF  + D T     V++    F  E+  I        AN RK G   + +  ++
Sbjct: 593 -ENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRGDD 651

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
           ++  V    G+  + +   N + + F+  ++  M R     +G+RL
Sbjct: 652 QVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRL 697


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 350/610 (57%), Gaps = 65/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 AHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII    + + E YR GRG   +RAR   E
Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L + R P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLKQMLEYFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSGLVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+++Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I+ E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 VMAIIADLLDILARPERITTIISDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 600 FSNRGRLYWL 609


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/720 (33%), Positives = 386/720 (53%), Gaps = 53/720 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMSADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             NLL     GE IQ +I++    D            L  V+  G     + SE     R
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
            G   L +   +++  V+   G    ++G +    + F+   +  M R   GVR  + +D
Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRD 698



 Score = 37.4 bits (85), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       I++ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/626 (37%), Positives = 357/626 (57%), Gaps = 33/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 140 MPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++NPE S E+LL+ +I    GPDFP+G ++V  R+ I E+YR GRG   +
Sbjct: 200 REVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV-GRKGIEEAYRTGRGSITM 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   ++  + D+RDE++     R
Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 376 VIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIAREGLMGLLEIDEIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + +++L S  +Q   I+ E+  + E + 
Sbjct: 436 ANAILEMQLRRLAALERQKIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V I+  G+I        RS K     
Sbjct: 496 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 548 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 607

Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621
            ++ I  + A         LV+++KG
Sbjct: 608 PDEAIAEILAIRDYEAVPYLVLATKG 633


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 272/800 (34%), Positives = 413/800 (51%), Gaps = 89/800 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFA-------LEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           +S+  T+++    A    F        ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               E G     A++KSARIVG+ +GK HPHGD ++YD+L R+ Q +  R PLI GQGNF
Sbjct: 61  WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++D D  A+ RYTEAR+ +VA+ +L  +D+D VDF+  Y+  + EP V P++FPNLL N
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +A LA +DNP ++I++L++ I GPDFPT  +I+ +   
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGT-AG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             ++Y  GRG   +RAR  +EE GRG    IV+T IPYQV KS L+EKIAE    KRI  
Sbjct: 240 ARKAYHEGRGSIIMRARHQIEE-GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEG 298

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + DIRDES  E VR+V+  K R   P++++  ++  +  ++ FP NM  +  GR P+V+ 
Sbjct: 299 ISDIRDESNREGVRVVIDLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PEVLN 356

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
           L  I++ ++  R EV+ RR+ F +     R  IL GL+IA  N+DE++ IIR    P   
Sbjct: 357 LKDIIESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVA 416

Query: 414 KPVMVSR---------------------------FSLTENQVDAILNLRLRSLRKLEEYQ 446
           +  +++R                           + L+E QV AIL+LRL  L  L   +
Sbjct: 417 RETLLAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDE 476

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  EL+ L     +  S+L   ++ +  +  E+ EV+  F+             E++   
Sbjct: 477 IGDELEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRK--------SEITAPA 528

Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +IE+E + V I+  G+I        R+        S +  K+ D++       
Sbjct: 529 DGIEDEDLIEREDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTS 588

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSG----RGHGEAIQLLIDLNHNQDIVTAFVYDST--- 611
           T   +L  ST GK Y L    L  G    RG    + +L  L+ ++ I T          
Sbjct: 589 THTPVLFFSTAGKVYRLKVWRLPEGGPTTRGR-PVVNMLPALDKDETIATVLPLPEDEAE 647

Query: 612 -CKLLVV--SSKGN-------AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
             KL VV  ++KGN       AF    + I +N +    F + S++  + + +    D V
Sbjct: 648 WGKLSVVFATAKGNVRRNSMDAF----ANIPSNGKFAMKFEEDSADRLIGVALLEASDDV 703

Query: 662 AVVGENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +   + K + F+ D++ E +     GVR  + K  G  +VI   I   +         Y
Sbjct: 704 LLATRSGKAIRFAGDEVREFTSRTSTGVRGMTLK--GDDEVISLSILHRVGTTPDEREDY 761

Query: 720 NRSENDLLGWLGKRGGVGSL 739
            R       W G++ G  +L
Sbjct: 762 VR----FAPWKGEKEGEPAL 777


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/737 (34%), Positives = 396/737 (53%), Gaps = 83/737 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ +D++ VDF   Y+  ++EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               LAL++NP +SIE L+ YI  PDFPT G+I      + E Y+ GRG   +RAR   E
Sbjct: 191 IAGCLALLENPALSIEDLIAYIPAPDFPTAGLIY-GMTGVREGYQTGRGRVIMRARTHFE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +  G   ++V EIPYQV K  LIEKIAEL+  K+I  + DIRDES +    ++    
Sbjct: 250 DMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ 
Sbjct: 310 RGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLSHRREVITRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           + ++    R  IL+GL +A  N+DEII +I+    P P    R                 
Sbjct: 369 YELRKARERGHILEGLAVALSNVDEIITLIKA--APTPADAKRGLMERTWRSAVVEEMLV 426

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q  AIL LRL+ L  LE+ +I  E  +++A+ 
Sbjct: 427 RAASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKI 486

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++E F        RR+    + +  + +L+  +I  +
Sbjct: 487 LDLLDILAKPERITEIIVTELVAIREQFGDE-----RRSEI--ILQTHELSLED-LITPQ 538

Query: 519 PITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+I        R+ +       A   K+ D +     A+T D IL  S  G
Sbjct: 539 DMVVTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRG 598

Query: 571 KAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620
           + Y L     P G+ +S    G+ I  L  L   + I     V  F  D   K + ++++
Sbjct: 599 RCYWLKVYEAPQGSRVS---RGKPIVNLFPLEEGERINAVLPVKEFADD---KFIFMATR 652

Query: 621 GNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
                       +N RK G   + +  ++ +  V   TG   + +V    K + F  + +
Sbjct: 653 AGTVKKTPLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDV 712

Query: 679 PEMSRG----KGVRLQS 691
             M RG    +G++LQ+
Sbjct: 713 RPMGRGARGVRGMKLQA 729


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NP+ ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLSNPDATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMTKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTTVKAEF------GDARRSRIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 259/747 (34%), Positives = 407/747 (54%), Gaps = 77/747 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 23  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 82

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 83  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 143 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 202

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A LAL+ NPE ++++L+E I  PDFPT GII  +   + E YR GRG   +R R  VE
Sbjct: 203 IAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGT-VGVREGYRTGRGRVVMRGRTHVE 261

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    R
Sbjct: 262 DLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ +
Sbjct: 322 GEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTVY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420
            ++    R  +L+GL +A  N+DE+IA+I+    P              PV   M+ R  
Sbjct: 381 ELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVEEMLKRAA 440

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I +E   ++   + I
Sbjct: 441 MEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEIM---DVI 497

Query: 462 DSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             LL+  +  ++  QI  E  E+  I ++  D  +RR+    V  A   +L+  +I  + 
Sbjct: 498 ADLLDILARSERVTQIIVE--ELTAILNQFGD--KRRSEI--VHNAQDLSLED-LITPQD 550

Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V +S+ G+++S  L+ +           A   KE D +     A+T D IL  S+ G 
Sbjct: 551 VVVTLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGR 610

Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
               K Y +P G+ +S    G+ I  L  L   + I        +D    + + ++KG  
Sbjct: 611 VYWLKVYEVPQGSRVS---RGKPIVNLFPLEDGEKINAILPVKEFDENHFVFMATAKGTV 667

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEM 681
                +E     R G   L +   + + +  +VT   + + +V    K + F  + +  M
Sbjct: 668 KKTALTEFSNPRRSGIIALNLDDGDYL-IGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM 726

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICE 707
            R  +GVR    K  G   VI   I +
Sbjct: 727 GRAARGVR--GMKLQGKQQVISLLIAD 751


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 3   VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 63  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 123 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 183 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 242 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 301 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 419 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 479 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 531 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        Y++   L++ +  G
Sbjct: 591 PDEKIAQILAIRDYEAVPYLILATKGG 617


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 344/568 (60%), Gaps = 22/568 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIV
Sbjct: 13  VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+M+++
Sbjct: 73  GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+
Sbjct: 133 AVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+  +E
Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           E   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  E +RIV+  + R
Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR+ F
Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435
            ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL+LR
Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E   L+A       +L + +++ NQI  +  E+ EI +K  D  R 
Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547
                ++S  +   L +         V +++ G+++ L              +  +    
Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMGVHS 542

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL 575
            D ++  + + T D +L  +  GK + +
Sbjct: 543 DDFIEHLVASSTHDLLLFFTNTGKVFAM 570


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/639 (36%), Positives = 367/639 (57%), Gaps = 57/639 (8%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N ++ + +V  N++ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 7   MAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYA 66

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     A+ K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL +GQGNFG+
Sbjct: 67  MYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGS 126

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RM Q+A  +++ +D++ VDF+D Y+    EP V P++FPNLL NG+
Sbjct: 127 PGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGS 186

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN++E+ E     + NP+ S E+L E +I    GPDFPTG  I+  R
Sbjct: 187 AGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGATIL-GR 245

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L    RI 
Sbjct: 246 SGIDDAYRTGRGSITMRAVVNVEEI-QGRQCLVVTELPYQVNPDNLALKIADLTKEGRIQ 304

Query: 297 LLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            + DIRDE++     R+V+  K R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 305 GIADIRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFSANMLALVDG-VPRT 362

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + +D  +  W+ H+ +V+ RR++F ++  + ++ IL+G L A  N+DE+IA+IR     +
Sbjct: 363 LSIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVE 422

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID--SLLNSGK 469
           + +  ++    + + Q  AILNL+LR L  LE  +I  E D+L  E++ +D   +L S +
Sbjct: 423 EARGGLIELLGIDDIQATAILNLQLRRLAALERQKIIDEHDDL--ERQILDYRDILASPQ 480

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVIS 525
           +Q + +  E+ E+ + +        RR+T      EVS  D       +I +E + V I+
Sbjct: 481 RQRDIVGSELSEIVDRYGDE-----RRSTILPYGGEVSMED-------LIAEEDVVVTIT 528

Query: 526 NRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GK 571
             G+++  +S +          +     +E D +       TT   LL  T+       K
Sbjct: 529 RGGYVKRTRSDNYRAQKRGGKGVRGTQLREDDIVD-HFFVTTTHHWLLFFTNLGRVYRAK 587

Query: 572 AYTLPAGNLLSGRGH---------GEAIQLLIDLNHNQD 601
           AY LP G+  S   H         GE+I  ++ L + +D
Sbjct: 588 AYELPEGSRESKGQHVANLLAFQPGESIAQVLALRNYED 626


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/702 (34%), Positives = 391/702 (55%), Gaps = 41/702 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGE
Sbjct: 15  LREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFRKCARVVGE 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA- 140
           V+GK HPHGD +VYD+LVR+AQ F  R+PLI G GNFG+ID D  AA RYTE R+  +A 
Sbjct: 75  VLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTECRLQALAT 134

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +LQ ++++ VDF D ++    EP+V P++ P LL NG SGIAVGMAT+IP HN+ E+ 
Sbjct: 135 EALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIPPHNLGELV 194

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +ALI +P++S  +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +RA   +E 
Sbjct: 195 DGLVALIHHPQMSDRELMRYIPGPDFPTGGHIL-GQGGIEEAYTTGRGSMTLRAVATIET 253

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
           +   GR     I++TE+PYQ  K+ L+EKIAEL+  K+I  + D+RDES  D +R+V+  
Sbjct: 254 LEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDGIRVVIEL 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R   P +++ +++  + ++  F  NM  +  G  PQ++ L   L+ +L  R E + RR
Sbjct: 314 K-RDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGE-PQLLTLKRSLEVFLRFREEAIARR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  +L+GLL+A  N+D +I +IR+       +  ++  ++L+E Q DAIL
Sbjct: 372 TRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSEAQADAIL 431

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE  +I+ E   L  +      +L   ++    I  E+ E+K  F+     
Sbjct: 432 QMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAKFATP--- 488

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LH 544
             RR+   +   AD       +I  +   ++++ +G+I+ +   + +  +          
Sbjct: 489 --RRSRIVQ---ADGEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRGRKGAE 543

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D+++     +  DRIL  S  G  Y L A  + SG  +  G  I  L+ +   + I
Sbjct: 544 IKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIPREEKI 603

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVT 657
            +      +     L++++ KG  FI +      +  +    + +S EE  +++ V +  
Sbjct: 604 TSVIAVQEFSEDEYLVMLTRKG--FIKKTPLAAFSHIRSNGLIAISLEEGDQLRWVRRTR 661

Query: 658 GDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
                ++G  + + I    S DQ+  + R  +GV+  + + G
Sbjct: 662 EQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPG 703


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/726 (35%), Positives = 391/726 (53%), Gaps = 69/726 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD+AAA RYTE RM+++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEIRMSRI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y++ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA LAL+ N  ISI++L++ I  PDFPT GII      + + YR GRG   +RAR   E
Sbjct: 191 VEACLALLKNSNISIDELIDLIPAPDFPTAGIIY-GVNGVRDGYRTGRGRVVMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V+    R
Sbjct: 250 DLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + M+  F +NM  L  G+ P+++ L  IL  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVILNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQILDAFLRHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  +L+GL +A  N+DEIIA+I+    P                   M++R  
Sbjct: 369 ELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLTRAM 428

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L++ Q  AIL LRL+ L  LE+ +I +E  +++   E
Sbjct: 429 ADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVI---E 485

Query: 460 KIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           KI   L+  +  ++  QI  E     E+ +     G  R +   V   D +   + +I  
Sbjct: 486 KIIDYLDILANPERITQIITE-----ELDAIKLQFGDERRSEIVVDTQDLS--MEDLITP 538

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
             + V +S+ G+I        R+ K       A   KE D +     A+T D IL  S+ 
Sbjct: 539 ADVVVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSL 598

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAF 624
           G+ Y +    +  G  +  G+ I   + L   +    I+    +D    + + +S G   
Sbjct: 599 GRVYWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFDENRFVFMATSFGTVK 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               SE       G   + +   + +  V    G H V +  +N K + FS + +  M R
Sbjct: 659 KTPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGR 718

Query: 684 -GKGVR 688
             +GVR
Sbjct: 719 TARGVR 724


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 261/770 (33%), Positives = 413/770 (53%), Gaps = 49/770 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVH+R+++AM + G      + K A
Sbjct: 18  IEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLYAMYDSGYRPDRGYFKCA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD ++Y++LVRLAQP+  R PL+ G GNFG+   D AAA RYTE ++
Sbjct: 78  RVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFGSPGNDPAAAMRYTECKL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +D++ VDFR  Y+    EPVV P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 138 APLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E     +D+P+ S E+LL+ +I    GPDFPT G IV  R  I E+YR GRG   +
Sbjct: 198 REVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIV-GRRGIEETYRTGRGSITM 256

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  RG  C+VVTE+PYQV    L  KIAEL+   +I  + D++DES+     R
Sbjct: 257 RAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKISGIADVKDESSGRTGQR 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  + ++  F  NM  L  G VP+ + LD +++ W+AH+ E
Sbjct: 317 LVIVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLRLDQMIRHWVAHQIE 374

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ + ++  + R  IL+ LL A   IDE+IA+IR   + D  K  ++   ++ + Q
Sbjct: 375 VIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDAKNGLMELLAIDDVQ 434

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  Q+ SE D L+A+    + +L S ++Q   I  E+ E+ E + 
Sbjct: 435 ARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEILESPERQRRIIRDELAEIVEKYG 494

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT   E+   +     +  I +E I V I+  G+         R+ K     
Sbjct: 495 DD-----RRT---EIVPYEGDMRMEDFIAEEDIVVTITRGGYAKRTRLDNYRAQKRGGKG 546

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           +     K+ D ++      T   IL  +  G+ Y   A  L  L+    G  +  L+   
Sbjct: 547 VRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPELARDSRGHHVANLVPFL 606

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---K 651
            +++I        YD+   L++ +  G     + +E  +    G   + +  ++++   +
Sbjct: 607 PDEEIAQVLALRDYDAAPYLVLATRSGLVKKTKLAEFDSARSSGIIAINLREDDELIAAR 666

Query: 652 LVVKVTGDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGI---SDVICFKI 705
           LV     D + ++  N + + F  S D +  M R   GV    + +G      DVI  + 
Sbjct: 667 LVYPT--DDLLLISSNAQAIRFPASDDSLRPMGRATSGVIGMRFAEGDYLLSMDVI--RE 722

Query: 706 CEGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG T   + + G    R+  D    + KRGG G L  +     GK + +
Sbjct: 723 GEGATDVLVATEGGYAKRTPADQYP-VQKRGGKGVLTARIVESRGKLVGA 771


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/692 (34%), Positives = 374/692 (54%), Gaps = 61/692 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I  +Y  GRG   +R R 
Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  I+  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQIYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420
            + ++    R  +L GL I+  NIDE+I +IR+   P    + +M  R            
Sbjct: 374 KYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  +++ F        RR+   E+         + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKDELIAIRDEFGTP-----RRS---EIVEGGPDMDDEDLISREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T            T  ++  +++G     + 
Sbjct: 606 LPIGTPQS---KGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            + +   R GK  +K+  E    L V+   D 
Sbjct: 663 GDFVQVNRNGKIAMKLEEEGDEILSVETCTDQ 694


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 27  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 86

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 87  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 146

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 147 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 206

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 207 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 265

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 266 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 325 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 383 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 442

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 443 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 502

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 503 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 554

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 555 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 614

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        Y++   L++ +  G
Sbjct: 615 PDEKIAQILAIRDYEAVPYLILATKGG 641


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 371/677 (54%), Gaps = 57/677 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A+S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + E G      ++K A  
Sbjct: 13  AISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATA 72

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++DGD  AAYRYTE+R+ +
Sbjct: 73  VGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLER 132

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  GIAVGMAT IP HN+ E
Sbjct: 133 TAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGE 192

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+NP++S E+L+EYI  PDFPTGG+I+  R    ++Y  GRG   +RA+  +
Sbjct: 193 VIDATLALIENPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRI 251

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++DES    VR+V+  K 
Sbjct: 252 EEIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELK- 310

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  ++  + M+  F  NM  L+ G+ P+ + L   L  +L  R +V+ RR++
Sbjct: 311 RDATAEVVLNQLYRFTPMQVSFGCNMLALNGGK-PEQLTLRTFLTAFLDFREDVVARRTA 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410
           + ++    R  IL GL +A  N+DE++A IR                             
Sbjct: 370 YLLRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLI 429

Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           D P   M     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S 
Sbjct: 430 DDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSR 489

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I+ E+  V++ F+       RRT   + +        + +IE+E + V ++  G
Sbjct: 490 ERIMEIISNEMTAVRDQFAVP-----RRTEIVDWA---GDMDDEDLIEREDMVVTVTQSG 541

Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I        RS K     LS    KE D +     A+T  ++L  +T G  Y L    L
Sbjct: 542 YIKRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRL 601

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
             G     G+AI  ++ +     +      D         +++  +SKG+      S+  
Sbjct: 602 PQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFT 661

Query: 633 ANTRKGKTFLKVSSEEK 649
              R GK  +K   +++
Sbjct: 662 NVMRNGKIAMKFEGDDE 678


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/766 (32%), Positives = 422/766 (55%), Gaps = 49/766 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIV
Sbjct: 10  INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEAR++++
Sbjct: 70  GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+
Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            +  +A ID   E+ +  L++YI  PDFPTG  I      + +++  GRG   +R +  +
Sbjct: 190 LDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           E  G     I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES    +RIV+  K 
Sbjct: 249 ETEGNHEK-IIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRIVVDVK- 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +  +++  ++ L+ +++ F +N   L  GR P+ + L  ++K ++ HR EV+ RR+ 
Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRQLNLKDLIKAFVDHRHEVVIRRTK 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL+IA  NIDE+IAII++   P      ++ RFSL+E Q  AI+ +
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSEIQSRAIVEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +      G 
Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELKEIKDKY------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  ++  A +    +     + + + IS+ G+I        R+     V       +
Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A     +L+ +  GK Y L    +  G     G AIQ L+++  + D V 
Sbjct: 538 DEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD-DKVN 596

Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651
           AF+          + ++  LL  + KG   +++++ + A +R    G   + +  ++ + 
Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKIC 706
            V    G++ V +   N + + F  + +  M R   GVR  +  D    +V   +C K  
Sbjct: 654 EVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDPNDEVVGMVCIKDK 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E  T +  + + Y +  N     +  RGG G        ++GK ++
Sbjct: 714 EKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 343/611 (56%), Gaps = 26/611 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTNDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP I  + L+EYI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIY-GLQGVRDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + EVG     IV+TEIPY V K +LIE IA+L+   ++  + +  DES
Sbjct: 240 GRGRIVIRAKAEI-EVGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVIDVK-REANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLALKDCVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P      + +RF
Sbjct: 357 VEHRHEVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E + L      +  +L   +     +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPELCKKVMKDELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           VKE +        RRT          A   +     +P+ + +S+ G+I        R  
Sbjct: 477 VKEKYGDD-----RRTKIIPAEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSEFREQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591
               V       +E D  +    A     +L  +  G+ Y L   N+  G     G AIQ
Sbjct: 529 ARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKGRAIQ 588

Query: 592 LLIDLNHNQDI 602
            L+++  +  +
Sbjct: 589 NLLNIESDDSV 599


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/685 (34%), Positives = 397/685 (57%), Gaps = 42/685 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RAIPD+RDG KPV RRII++M E+ L+    +KKSARIVGE +GK
Sbjct: 9   IKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVGETMGK 68

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R++Q F  RYPL+ GQGNFG+IDGD+ AA RYTEAR+ ++AE +++
Sbjct: 69  YHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIAEEMIR 128

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V F   ++   +EPV FPSK P LL NGTSGIAVGMAT++  HN+ E+C+A   
Sbjct: 129 DIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVCDAIKY 188

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ID+ + S+  LL++I GPDFP GGII  +++ +++ Y+ G G  +V  R  +E   +  
Sbjct: 189 KIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKD-MIDIYKTGHG--KVICRGSIEAEDKR- 244

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I++  +PY + K++ I+ +A L+   +I  + DI+DES  + +RIV+  K      DL
Sbjct: 245 --IIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDR-IDL 301

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + +ET   +  N++ +  VP VM L+ ++K ++  R +V+ +RS + ++ ++
Sbjct: 302 VVNQLYEKTQLETSISVT-NLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKKLN 360

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+ IL GLLIA  NID +I IIR+    +  +  ++   SLTE Q +AIL++RL+ L  
Sbjct: 361 ERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKELSLTEAQANAILDMRLQRLTA 420

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC- 500
           LE  ++K E+D +  + E +  ++N+   + N +  E+ E+K+ +       RRRT    
Sbjct: 421 LEISKLKEEIDEINKKIEYLSDVVNNENTRKNVLKAELDEIKKQYG-----DRRRTEVIE 475

Query: 501 -EVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-----LHFKEGDSLK 552
            E+SR D    ++ +I  E   +++S +G ++  SL  +            + ++ DS+K
Sbjct: 476 GEISRRD----EEDLIPNEESVIILSEKGLLKRVSLDEYKSQRRGGRGIITNTRDNDSVK 531

Query: 553 IALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
             +     D +   +  G     KAY +   +    +  G +    + LN N+ I     
Sbjct: 532 SVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRD---RKALGVSGNKFLKLNDNEIIRQIIK 588

Query: 608 YDSTCKLLVVSSKGNAFIVEE--SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
                + L++    N FI +   SEI+   + G   + +++ +++  V +++G   + V 
Sbjct: 589 SPENLEDLLIIVTKNGFIKKTNISEILDMRKSGIKIINLANNDEVVSVSEISGSSKIFVA 648

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVR 688
             N K  +F  D++P  SR  +GV+
Sbjct: 649 ASNGKAAVFLSDEVPLTSRSSRGVK 673


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/719 (34%), Positives = 391/719 (54%), Gaps = 77/719 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 9   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 69  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 129 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 189 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RLIEKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 248 AEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 308 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421
           R+ + +     R  IL GL IA  NIDEII II+  + P    + +M  ++         
Sbjct: 366 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILPLV 425

Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 426 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 485

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 486 SRTRLLEILKAELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 537

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 538 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 597

Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
                       P  N+L  + + E I  ++ L  NQD            ++  ++KGN 
Sbjct: 598 KLPLSNPQGKGRPMVNILPLKAN-EYITNIMPLPENQD------ERDNLNIMFATAKGN- 649

Query: 624 FIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
             +  S+++A  +    GK  +++  ++K+  V     D H+ +  +  K L F+++ +
Sbjct: 650 --IRRSDLLAFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESL 706


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +      +T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T      D T      ++  +++G     + 
Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+     D V +     + + FS+D +
Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDV 714


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/654 (35%), Positives = 380/654 (58%), Gaps = 37/654 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ + E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGDSAAA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ +++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E  +   A++DNPEI+I++L++YI GPDFPT   I+  R  I E+++ GRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKR-GIREAFKTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-- 306
              VR+   +EE+      I++TEIPY V K+RL+EKIA+L+  KRI  +  I+DES   
Sbjct: 241 KLVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGRE 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILK 362
           E VRIV+  K R  +P++++  ++  + ++  F +NM  +         P+V+ L  I+ 
Sbjct: 301 EPVRIVIDLK-RDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIID 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419
            ++AH+ +V+ RR+ F +   + R  IL+GL  A  ++DE+I  IRN   E   K  +  
Sbjct: 360 YYIAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSE 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF  ++ Q  AI+++RL  L  LE  ++++E + LL + +    +L +       I  E+
Sbjct: 420 RFGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELLEKIKYYKDVLANEILVHQIIKDEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +K  ++       RRT   ++   +     + +I++E   + +++ G+I+ L + +  
Sbjct: 480 SVIKNKYADE-----RRT---KIEIDEDEIDIEDLIQEEESVITMTHFGYIKRLPADTYK 531

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589
                   +  L  +E D +K      T   I+  +  G+ Y L A  +  SGR   G A
Sbjct: 532 SQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTA 591

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638
           I  L+ L+ ++ + T      Y     L++ +  G   +V++++++   N RKG
Sbjct: 592 IVNLLQLDGDEKVTTVIPIQEYKEGLYLIMATKNG---LVKKTDLMEYDNIRKG 642


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++N + +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNADATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KPV-------MVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRAE 428

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  +
Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 348/602 (57%), Gaps = 57/602 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LAL+ NPE ++++L+E I  PDFPT GII  +   + E+YR GRG   +R R  VE
Sbjct: 191 VDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTM-GVKEAYRTGRGRVVMRGRTHVE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    R
Sbjct: 250 DMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +  HRREV+ RR+ F
Sbjct: 310 GEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFFGHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            +   +R   +L+GL +A  N+DE+IA+I+    P   K  ++SR               
Sbjct: 369 ELGKAERG-HVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLKRAA 427

Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                       F +T N       Q   IL +RL+ L  LE+ +I +E   ++     +
Sbjct: 428 MEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 487

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++    I  E+  +++ F  S      R+    V  A   +L+  +I  + + 
Sbjct: 488 LDILAKPERVTQMIVDELATIRQQFGDSC-----RSEI--VHNAQDLSLED-LITPQDVV 539

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G++        R+ +       A   KE D +     A+T D IL  S+ G+ Y
Sbjct: 540 VTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVY 599

Query: 574 TL 575
            L
Sbjct: 600 WL 601


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 346/610 (56%), Gaps = 67/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 33  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 93  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 390

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 561

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621

Query: 564 LLLSTDGKAY 573
           L  S  G+ Y
Sbjct: 622 LCFSNRGRVY 631


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/720 (33%), Positives = 386/720 (53%), Gaps = 53/720 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             NLL     GE IQ +I++    D            L  V+  G     + SE     R
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
            G   L +   +++  V+   G    ++G +    + F+   +  M R   GVR  + +D
Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRD 698



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       IL+ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/630 (36%), Positives = 361/630 (57%), Gaps = 40/630 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 20  IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE ++
Sbjct: 80  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +L+ +DE+ VDF+D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 140 MTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++P+ S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 200 REVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+     C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++     R
Sbjct: 259 RAVVEVEEI-HNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------FSLT 424
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR   + + V V+R        + 
Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIR---RSETVEVARGGLMDLLQID 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  + E
Sbjct: 433 EIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPERQRAIVSEELAALVE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            F        RR+        D     + +I +E I V IS  G++        RS K  
Sbjct: 493 KFGDD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRG 544

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594
              +     K+ D +     + T   +L  +  G+ Y + A  L  +GR   G+ +  L+
Sbjct: 545 GKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDARGQHVANLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
               ++ I        Y++   L++ +  G
Sbjct: 605 AFQPDEQIAQILAIRDYEAAPYLVLATKAG 634


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 262/725 (36%), Positives = 390/725 (53%), Gaps = 64/725 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+  N       ++K VSL   ++  YLAYA+S I  RA+PD+RDG KPVHRRI+ +M E
Sbjct: 3   DHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
                   + KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 63  NNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+ + A  +L  +D D VDF+  Y+ ++ EPVV P++FPNLL NG  GI
Sbjct: 123 DPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALIDNPE+SIE+L   + GPDFPTGG I+  R  I  +Y
Sbjct: 183 AVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSIL-GRAGIRSAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE+      ++VTEIPYQV K+ LIEKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRD 301

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  + +RIV+  K R   PD+++  ++  + +++ FP NM  L+ GR P+ + L   L 
Sbjct: 302 ESDRQGMRIVIEIK-RDAVPDIVLNQLWRYTALQSSFPCNMIALNGGR-PETLTLRDFLT 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------ 410
            ++  R EV+ RR+ + +        +  GL IA  NIDE+I +IR              
Sbjct: 360 AFIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCA 419

Query: 411 -DKPKPVMV--------SRFSLT--------ENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            D P   M          R +LT        E Q  AIL LRL+ L  L   +I   L+ 
Sbjct: 420 RDWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L AE      +L S  + +  I  E+  VKE  +       RRT   +   +D     + 
Sbjct: 480 LAAEIADYLDILGSRARLFGIIKDEMIAVKEAHATP-----RRTIILD---SDAGVDDED 531

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+I        R+ +      S +  ++ D +     A T   +L 
Sbjct: 532 LIQREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLF 591

Query: 566 LSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------L 614
            S+ G+ Y      LP   L + +  G+A+  ++ L  ++ I T        K      +
Sbjct: 592 FSSRGQVYKEKVWRLP---LSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDV 648

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  +++G     + S+     R GK  +++   E++  V   T  D V +   N + + F
Sbjct: 649 MFATTRGTVRRNKLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRF 708

Query: 674 SIDQI 678
           ++  +
Sbjct: 709 AVTDV 713


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 346/610 (56%), Gaps = 67/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 33  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 93  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 390

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 561

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621

Query: 564 LLLSTDGKAY 573
           L  S  G+ Y
Sbjct: 622 LCFSNRGRVY 631


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/595 (36%), Positives = 340/595 (57%), Gaps = 46/595 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 126

Query: 135 RMTQVAELIL------------QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           R+++++  +             + +D D VDF   ++E + EP V P+++PNLL NGT+G
Sbjct: 127 RLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLVNGTTG 186

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRE 237
           IAVGMAT+IP HN++EI  A   +IDN      E  I++LLE + GPDFPTGG+I+  + 
Sbjct: 187 IAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVIL-GKA 245

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I E+YR GR   RVRA   +E +  G   IVVTE+PY V K+RLIE IA+L+  K+I  
Sbjct: 246 GIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDKKIDG 305

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + D+RDES+ +   V     R ++P++++  ++  + ++  F + M  L +   P+++ L
Sbjct: 306 ITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLAL-VNNQPKILNL 364

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
             +L  +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR+    +  K
Sbjct: 365 KQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVNSAK 424

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF L++ Q  AI+++RLR+L  LE  +I+ E D+L     K+ ++L   K     
Sbjct: 425 ATLMERFGLSDAQAQAIVDMRLRALTGLERDKIQKEYDDLQILIGKLKAILGDEKILLGV 484

Query: 475 IACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           I  EI E+ + +        RRT+      ++S  D       MI      V  +  G+I
Sbjct: 485 IKTEITEIADKYGDD-----RRTSIGFDEFDISMED-------MIPVTNTVVTFTKLGYI 532

Query: 531 RSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +   +          +  +   + D +   L   + D +L  +  G+ Y + A
Sbjct: 533 KRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRVYRIKA 587


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 258/758 (34%), Positives = 404/758 (53%), Gaps = 92/758 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+++PE  +E L+E +  PDFPT G+I      + E YR GRG   +RAR  +E
Sbjct: 191 VDACLKLLEDPETDLEALIEIVKAPDFPTAGLIY-GLHGVHEGYRTGRGRVVMRARTHIE 249

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+ S    I+V E+PYQV K  L+E+IAEL+  K++  + +IRDES +    V+    
Sbjct: 250 PIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSGMRVVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 310 RNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGK-PRLLNLKQMLVCFLEHRREVVTRRTI 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           F ++    R  IL+GL +A  N+DEIIA+I+    P                   M+SR 
Sbjct: 369 FELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLVEEMLSRA 428

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE---------- 450
                               + L++ Q  AIL LRL+ L  LE+ +I  E          
Sbjct: 429 LADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDLITD 488

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L ++LA  E+I +++                V+E+ +     G  R +   +S A+    
Sbjct: 489 LLDILARPERITAII----------------VEELTAIRNQFGDPRRSEIVLSTAEINI- 531

Query: 511 QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  E + V +S+ G+         R+ +       A   K+ D +     A+T D 
Sbjct: 532 -EDLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDT 590

Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617
           +L  S+ G+AY L    +  G     G+ I  L  L   + I        +D    + + 
Sbjct: 591 VLCFSSRGRAYWLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMA 650

Query: 618 SSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
           +S+G    V+++ +   AN RK G   + +   + +  V    G+  V +  +  K + F
Sbjct: 651 TSEGT---VKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRF 707

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +   +  M R  +GVR  + +DG    VI   + +G T
Sbjct: 708 AESDVRPMGREARGVRGMTLEDG--QRVIAMLVAKGET 743


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/772 (32%), Positives = 423/772 (54%), Gaps = 47/772 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++  ++ HR +
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF+L+E Q
Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  + 
Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ  ++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNFLNID 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645
            + D V A++         Y ++  +L  +  G   +++++ +   +R    G   + + 
Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700
            ++++  V    G++ + +   N + + F    +  M R   GVR  +  D G  +V   
Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           IC K  E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/460 (45%), Positives = 293/460 (63%), Gaps = 42/460 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+ 
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ R
Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR           
Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424

Query: 421 -----------------------FSLTENQVDAILNLRLR 437
                                  + LTE Q  AIL+LRL+
Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQ 464


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 343/610 (56%), Gaps = 70/610 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L++N
Sbjct: 125 ETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLNN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
            E +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 SEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR------------ 420
           +L+GL +A  NIDE IAII+    P         KP        M++R            
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGGRS 422

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L++ Q   IL +RL+ L  LE+ +I  E   ++A+   + 
Sbjct: 423 AYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIADLL 482

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I  E+  VK  F      G  R +  E++  +  T  + +I  + + V
Sbjct: 483 DILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--EDLITPQDMVV 534

Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
            +S+ G++        R+ K       A   KE D ++    A+T D IL  S  G    
Sbjct: 535 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 594

Query: 571 -KAYTLPAGN 579
            K Y +P G+
Sbjct: 595 VKVYEVPQGS 604


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/535 (40%), Positives = 328/535 (61%), Gaps = 16/535 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 15  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EP V P+ +PNLL NG SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLTGIKDAYTAGRGSFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  + A  +R
Sbjct: 254 RATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GL++A L+IDE+I IIR+ D   + K  +++ FSL+E Q
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDKLNGEIDALTAILESDAELRKLVSSELAAVAKKF- 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541
             TD   RRT   E + +  A++    +  +P  V++S+ G + R+  +  V++S
Sbjct: 491 -GTD---RRTVLLESAGSQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 540


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/441 (43%), Positives = 299/441 (67%), Gaps = 7/441 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R
Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+
Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSE 450
           AIL++RLR L  LE  +I+SE
Sbjct: 420 AILDMRLRRLTGLERDKIQSE 440


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/682 (34%), Positives = 378/682 (55%), Gaps = 47/682 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MEDNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +D+D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP IS E+L++YI  PDFPTG  I    + +  +Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIY-GLQGVKNAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E  G     IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-GETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANIILNKLFKMTALQSSFSVNCIALVNGR-PRLLNLQECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           + HR +V  RR+ F ++    R  IL+GLLIA  NIDE++ IIR    P     +   RF
Sbjct: 357 VEHRHDVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ +
Sbjct: 417 NLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNPERCKEVMKNELYD 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           +KE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 IKEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           +   V       +E D  +    A     +L  + +G     K Y +P G+  S    G 
Sbjct: 529 ARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSS---KGR 585

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645
           AIQ ++ L    D V AF        L +    N   ++   ++  T+KG   KT L+  
Sbjct: 586 AIQNMLSLEPG-DAVNAF--------LRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAY 636

Query: 646 SEEKMKLVVKVT---GDHVAVV 664
           S  +   V+ +    GD V  V
Sbjct: 637 SRPRNNGVIAININDGDEVVDV 658


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/635 (34%), Positives = 351/635 (55%), Gaps = 59/635 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   YL Y++S I  RA+PD+RDGFKPVHRRI++AM EMGL     + K 
Sbjct: 2   NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+ +G  HPHGD ++YD+LVRLAQPF  RYP+I GQGNFG++DGD  AA RYTE R
Sbjct: 62  AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D + VDF   Y+E   EP V P+K PNL+ NG++GIAVGMAT+IP HN
Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + +++NP   + ++L+++ GPDFPTGG I   R  I  +YR GRG F +RA+
Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIY-GRSGIANAYRTGRGRFLMRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++ +G   I+VTEIPYQV K++LIE++A+L+  K I  + DIRDES  D   ++  
Sbjct: 241 ASIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F +    +  G+ P+ +PL   ++ ++ HR +V+ RR
Sbjct: 301 LKRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQ-PRELPLPDAIRHFIDHRVDVVRRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------------- 412
           +++ ++    R  IL G  IA  ++D +I IIR                           
Sbjct: 360 TAYLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEA 419

Query: 413 --------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                         P  ++ +  +L+  Q+DAIL L+L  L +L   ++  EL  +    
Sbjct: 420 LAGVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERI 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEK 517
            + +S+L S K+  + I  E+ +V++ +        RRT   +    + A LQ + +I  
Sbjct: 480 AEYESILASEKKLRSVIVKELEDVRKAYGDE-----RRTQIVD----ETAELQLEDLIAD 530

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G++        R  K        +  +E D ++  L   T   +L  +  
Sbjct: 531 EQVAVTVSHSGYLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNT 590

Query: 570 GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
           G+ Y L    +  +   G G++I  L++L   + +
Sbjct: 591 GRVYWLKIYEIPDVGAAGKGKSIASLLNLQPGEQV 625


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/761 (33%), Positives = 412/761 (54%), Gaps = 86/761 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+  +L  + ++ VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E  +E++LE I GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATIL-GKMGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEK+AEL   K+I  + D+RDES    
Sbjct: 246 IRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++ ++++  +   + ++  F + M  L +   P+V+ L  +LK +L H++
Sbjct: 306 MRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-VNNEPRVLNLMQMLKLYLEHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN       K  ++ RF L++ 
Sbjct: 365 EVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAILADEKKLLGVIREEIMLISDKY 484

Query: 487 SKS---------------------------TDLG--RRRT--TFCEVSRADKA-----TL 510
                                         T LG  +R +   F   +R  K      T+
Sbjct: 485 GDDRRTSIGFDEFDMSMEDLIPDENTIVAMTKLGYIKRMSVDNFKSQNRGGKGIKGMQTI 544

Query: 511 QQAMIEKEPIT------VVISNRGWIRSLKSHSVD-----------LSALHFKEGDSLK- 552
            Q  IE   +T      +  +N G +  LK++++            ++ L    G+S+  
Sbjct: 545 DQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQLLPGESITA 604

Query: 553 -IALHAHTTDRILLLST-DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            I +  +  D+ L ++T +G     P     + R +G  +Q ++ L  + +++     D+
Sbjct: 605 IIPMKEYDDDKFLFMATKNGMVKKTPMMEYANVRKNG--LQAIV-LREDDELIEVKATDN 661

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS-SEEKMKLVVKVTGDHVAVVGEN 667
           +  + +++  G      E+++    R   G   +K++  +E + + +   G+ + +V EN
Sbjct: 662 SKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGMKLNDDDEVVGMQMDTQGEKLLIVSEN 721

Query: 668 RKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICE 707
                  ID+  P+   GKG             V+C+KI E
Sbjct: 722 GMGKRTPIDEFTPQKRGGKG-------------VLCYKITE 749


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/602 (37%), Positives = 342/602 (56%), Gaps = 67/602 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF+  Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI +A   L+ N
Sbjct: 125 ETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE SI++L+E +  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEASIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVILNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSHFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NID+ IAII+    P P+                 M+ R           
Sbjct: 363 VLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMDRSWDSSIVREMLQRAETDNATSGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 AAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++  + I  E+  +K  F      G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDILARPERITSIIFDELTTIKSEF------GDERRSKIEMNATELNT--EDLITPQDMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 534 VTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 574 TL 575
            L
Sbjct: 594 WL 595


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/738 (34%), Positives = 396/738 (53%), Gaps = 74/738 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRNWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L     +  +I   I  V+E+     + G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDIL----ARPERITAII--VEELTLIRAEFGDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678
           G       +E  +N RK         +    +   +T G H V +  +  K + F  + +
Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 679 PEMSR-GKGVRLQSYKDG 695
             M R  +GVR  + ++G
Sbjct: 719 RPMGRQARGVRGMNLEEG 736


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/614 (36%), Positives = 352/614 (57%), Gaps = 61/614 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE ++++L++ I  PDFPT GII  +   + E YR GRG   +R R  VE
Sbjct: 191 VDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTL-GVKEGYRTGRGRVVMRGRTHVE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    R
Sbjct: 250 DMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ +
Sbjct: 310 GEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420
            ++    R  +L+GL +A  N+DE+IA+I+    P              PV   M+ R  
Sbjct: 369 ELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLKRAA 428

Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                       F +T N       Q   IL +RL+ L  LE+ +I +E   ++     +
Sbjct: 429 MEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 488

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++    I  E+  +++ F        RR+    V  A   +L+  +I  + + 
Sbjct: 489 LDILAKPERVTQMIVDELAAIRQQFGDE-----RRSEI--VHNAQDLSLED-LITPQDVV 540

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ +       A   KE D +     A+T D IL  S+ G   
Sbjct: 541 VTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVY 600

Query: 571 --KAYTLPAGNLLS 582
             K Y +P G+ +S
Sbjct: 601 WLKVYEVPQGSRIS 614


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 264/763 (34%), Positives = 406/763 (53%), Gaps = 93/763 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 28  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 87

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 88  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 147

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 148 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPHNLNEV 207

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SI++L+E I  PDFPT GII    + + + YR GRG   +RA+   E
Sbjct: 208 VDACLHLLRNPESSIDELMEIIPAPDFPTAGIIY-GIQGVKDGYRTGRGKVVMRAKVHFE 266

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +    ++    R
Sbjct: 267 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 326

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 327 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKELIEVFLQHRREVVTRRTVF 385

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 386 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 445

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L++ Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 446 EDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A  E +  +L    +    I  E+  +++ F + T LG RR+T  E S  D +T  + 
Sbjct: 506 VMAVIENLLDILAKPARVSTIIGEELSALRQEFGQ-TRLGARRSTI-EHSAQDLST--ED 561

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 562 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 621

Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608
            S  G+ Y L     PAG+  S RG           GE I +++ L        A  +V+
Sbjct: 622 FSNRGRLYWLKVWEVPAGSRNS-RGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVF 680

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665
            +T    V  +  + F        +N RK    + V  +E   L+      G+H V +  
Sbjct: 681 MATSMGTVKKTALDEF--------SNPRKAG-IIAVGLDEGDYLIGAALTDGEHDVMLFS 731

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++ K + F  + +  M R  +GV+    +DG    VI   + E
Sbjct: 732 DSGKAVRFDENDVRPMGRNARGVKGMQLEDG--QSVIAMLVAE 772


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/743 (32%), Positives = 409/743 (55%), Gaps = 33/743 (4%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L Y++S I  RA+PD+RDG KPV RRI+ AM+EM       ++K ARIVG+ +GK HPH
Sbjct: 32  FLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNGPDKPYRKCARIVGDTMGKYHPH 91

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y +LV +AQ +  R  L+ G GNFG++DGD AAA RYTEARM++++  IL+ +++
Sbjct: 92  GDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAAAMRYTEARMSKISVEILRDLEK 151

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VD  D Y+ E+ EP+V P++FPNLL NG+SGIAVGMAT++  HN++E  +A +A ++N
Sbjct: 152 DTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGMATNVAPHNLKETIDAVIAYMEN 211

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEIS+ +L++++ GPDFPTGG I+  R  I +++  GRG   +RA+   EE+  G   IV
Sbjct: 212 PEISVTELMQFMKGPDFPTGGYIL-GRSGIRKAFETGRGSIVMRAKTHFEEMANGKMRIV 270

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           V EIPY V K+ L+E+I  L   K I  + D+RDES  + +R+V+  + + +  ++++  
Sbjct: 271 VDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNMKGIRVVVELR-KDVQAEVVLNQ 329

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++ ++ +++ F +N NV+     P++  +  +LK ++  + EV+ RR++F ++    R  
Sbjct: 330 LYRMTALQSNFGVN-NVVLFDGAPRLAGMKELLKGYIDFQLEVIRRRTAFELKKAKDRAH 388

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA   +DE+I  IR     +  ++   ++F L E Q  AIL+++ R L  LE  
Sbjct: 389 ILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNKFPLDEIQAKAILDMQFRRLTGLERD 448

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I++E  +LL +    + +L   ++  + +  E+ E+K  +        RR+   E+  A
Sbjct: 449 KIENEYQDLLLKIADYEDILAHKERVIDIVKNELTEIKAKYGSP-----RRS---EIIDA 500

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHA 557
           D     + +I  E I V +S  G+++ L +++          +  +   + DS++  ++ 
Sbjct: 501 DAEMEDEDLIPVEDIMVTLSTNGYVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIESVINM 560

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTC 612
            T D +LL +  G+ + L   N+   S    G  I  L++++ ++ +   V     D   
Sbjct: 561 STHDFLLLFTNKGRVFRLRGFNIPNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKNDEQT 620

Query: 613 K-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
           K L  V+ KG       SE     + GK  + ++ ++++  V    G   V + G N K 
Sbjct: 621 KFLFFVTKKGIVKRTAISEFENIMKNGKKAILLNEDDQLAFVKPTDGQAEVLIAGANGKA 680

Query: 671 LIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +    D++ P+     GV+   +   G S V      EG   +    +   +  +     
Sbjct: 681 VRILEDKVRPQGRSAHGVK--GFNTDGSSVVGVATTLEGFNVLTVTEKGIGKVSSIASFR 738

Query: 730 LGKRGGVGSLVPKGFPRSGKFLS 752
           L  RG  G    K   ++G  +S
Sbjct: 739 LTNRGSKGVKAAKINEKTGDLIS 761


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 329/523 (62%), Gaps = 18/523 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KSA
Sbjct: 4   IHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD S+YD++VRL Q +  RY L+  QGNFG+IDGD  AA RYTEARM
Sbjct: 64  AVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEARM 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++AE +L  ++++ V  +  Y+E   EP V PS  PNLL NG +GIAVGMAT+IP HN+
Sbjct: 124 TKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALID P+I++++++ +++GPDFPTGG I  SR+ I E+Y  G  G +VR + 
Sbjct: 184 TEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI--SRQGIREAYATGHAGLKVRGKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314
            ++E   G   IV+TEIPYQV K+ LI+ I+ +  A +IP +  +RDES   E VRIV+ 
Sbjct: 242 RIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   P L++  ++  + +++ F + MN+  +   P+V+PL   ++ +L HRR+V+ R
Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQSTFTV-MNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+I  IR  +   + +  ++ RF+LTE Q  AI
Sbjct: 359 RTQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQRFTLTEIQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ +E D L     ++ S+L   +  W +I  EIR++++ +     
Sbjct: 419 LDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGDERLLWREIKKEIRDIRDRYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
              RR+T  ++   +    ++ +I  E + + ++  G+++  K
Sbjct: 477 ---RRSTITDL---EDDISKEDLIAVEDMVITMTKAGYLKRTK 513


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 260/760 (34%), Positives = 402/760 (52%), Gaps = 92/760 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCK 613
           L  S  G     K Y +P G   S    G  I  +  L   + I     V  F+ D    
Sbjct: 600 LCFSNRGRVYWVKVYEVPQG---SRNSRGRPIVNMFPLQEGEKINVVLPVREFLADKY-- 654

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDH-VAVVGENRK 669
           + + +S G    V+++ + A +R  K  +     +    ++  +   G+H V +  ++ K
Sbjct: 655 VFMATSLGT---VKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGK 711

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            + F  + +  M R  +GVR    +DG    VI   +  G
Sbjct: 712 AVRFDENDVRPMGREARGVRGMQLEDG--QQVIAMLVAGG 749


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLHN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  IL+ +LAHRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLAHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M++R           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRAETENATAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 DAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L+  ++    I  E+  VK  F      G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDILSRPERITVMIGEELTAVKAEF------GDARRSKIELNATELNT--EDLITPQDMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D ++    A+T D +L  S  G   
Sbjct: 534 VTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 345/576 (59%), Gaps = 23/576 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E G+    A++KSA  V
Sbjct: 17  VDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIFPDKAYRKSADTV 76

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG++DGD  AAYRYTEA+M+++
Sbjct: 77  GSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMSKI 136

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ V+F   Y++   EP+V P++FPNLL NG++GIAVGMAT+IP HN++E+
Sbjct: 137 SMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVGMATNIPPHNLREV 196

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   LIDNP+  +  ++  I GPDFPT GII+  +  I  +Y  GRG  +VRAR  +E
Sbjct: 197 IDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIM-GQSGIRAAYATGRGKIQVRARAEIE 255

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           E+  G + IVVTE+PYQV K+RLIE IA  +  KRI  +  +RDES  E +RIV+  K R
Sbjct: 256 EMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDESNREGMRIVIELK-R 314

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + M+  F + +N+  +  VP+VM L  +L+ ++  + EV+ +R+ +
Sbjct: 315 DANPQIILNKLYSFTQMQETFGV-INLALVNGVPKVMTLKEMLEHYIEFQSEVIRKRTEY 373

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GL IA   IDE+I  IR      + K  ++ RF L E Q DAI+ +R
Sbjct: 374 DLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIERFGLDELQADAIVKMR 433

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ EL  LL + ++ +++L         +  E+  +++ F        R
Sbjct: 434 LGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELAAIRDKFGDE-----R 488

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
           RT    VS        + +I +E   V +++ G+I        ++ K     ++ +  +E
Sbjct: 489 RTEILAVS---GEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQRE 545

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            D  +    A T D +L ++  G+ Y L    +  G
Sbjct: 546 EDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEG 581


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 376/703 (53%), Gaps = 63/703 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 4   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L 
Sbjct: 64  YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLD 123

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 124 DLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIA 183

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +    
Sbjct: 184 LINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDR 242

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +++
Sbjct: 243 EQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 302

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+ F ++    
Sbjct: 303 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------------- 420
           R  +L GL IA  NIDE+I +IR    P+     ++SR                      
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    + 
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+  V++ F        RRT   E+         + +I +E + V +S+ G+I      
Sbjct: 482 DELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLT 533

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
             R+ +      S +  ++ D +      +T   +L  S+ G     K + LP G   S 
Sbjct: 534 TYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS- 592

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T               ++  +++G     + S+ +   R 
Sbjct: 593 --RGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRN 650

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           GK  +K+  E    L V+   +H  V +     + + FS+D +
Sbjct: 651 GKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDV 693


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/777 (32%), Positives = 417/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RAR  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASIVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKDLIKHFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF L+E Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/583 (37%), Positives = 351/583 (60%), Gaps = 25/583 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 12  DNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAFPDRPYY 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVY+++V LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 72  KSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +A  +L+ +D+D VD    Y++ + EP V PS++PNLL NG  GIAVG+AT+IP 
Sbjct: 132 ARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN +I+ ++L+EY+ GPD PTGGI++   +S++ +Y  G G    R
Sbjct: 192 HNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILI-GEKSLLSAYETGEGKVPYR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE PY+  KS++++ I+E+   KR    +  + DIRDES  + 
Sbjct: 251 AKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRDESDRNG 310

Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +S+D D    +++ +F  +D++     NM  LS G+ P+ M L  I+K ++
Sbjct: 311 IRAVIEFK-KSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGK-PETMGLKTIIKHYV 368

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++E++ RR+   +    +R  I++G + A   +DE+IA IR+ +  K     ++ +F 
Sbjct: 369 EHQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASENLIDKFG 428

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  AIL L L  L  LE    + E   L    +K++ +L S K+    I  E++EV
Sbjct: 429 FTELQAQAILELMLYRLTGLEIKVFQKEYAELEKLIKKLEKILASEKELLRVIKTELKEV 488

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537
            + +S +     RRTT        K  +++ ++ +E + + +SN G+I+   LK++   +
Sbjct: 489 CDKYSDA-----RRTTIISDDTKSKIDVEELIVVEEVM-ITVSNDGFIKRIPLKNYNRSN 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            D   + ++EGD LK  + ++T D +L+ +  G  Y     N+
Sbjct: 543 SDPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQTKGINI 585


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/695 (33%), Positives = 382/695 (54%), Gaps = 46/695 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    V    L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL   
Sbjct: 8   DLLTSGQVIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPD 67

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VY++LVRL QPF  RYPL++G GNFG+IDGD  AA 
Sbjct: 68  RPFRKCARVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAM 127

Query: 130 RYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A  ++LQ + E  VDF   ++    EP+V P++ P LL NG++GIAVGMA
Sbjct: 128 RYTETRLAAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A +ALID P +S+ +LL Y+ GPDFPTGG+IVE    ++ +YR GRG
Sbjct: 188 TNIPPHNLGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEG-AGLLRAYRTGRG 246

Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    +E++  GRG      IVVTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 247 TITLRGVATLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRD 306

Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  E +R+V+  K R      L+E ++ L+ ++  + +N+  L +G  P+ + L  IL 
Sbjct: 307 ESDREGLRVVIELK-RDAPAAQLLEQLYHLTALQVTYGINLMAL-VGNQPRQLSLKEILS 364

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVS 419
           E+L  R + L R+    +     R  ++ GLLI+   ++++I I+R+    +     ++ 
Sbjct: 365 EFLQFREQTLLRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMI 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  L++ Q  A++ + LR L + E  +++ E   L      + +L++   ++   +  E+
Sbjct: 425 RLGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQTLIHQRPERLKALKKEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG----WIRSLKS 535
           R++K+ F      G  R T               ++ + P    + + G    W+    S
Sbjct: 485 RQLKKEF------GDPRLT--------------QILRETPAPEAVPDCGGDSLWLE--MS 522

Query: 536 HSVDLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEA 589
           +  DL    ++   + L +   A T+DR+ + +  GK Y L     P  +   G      
Sbjct: 523 YRGDLPLQTWRPWSEPLPLGFSAQTSDRLWVFTESGKVYPLSVERLPVTSHREGDRDQPL 582

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + LL +    + +++     +T  KL++++ +G   ++  S +     +G    K+ + +
Sbjct: 583 LTLLPESAQGETLLSVIPSQATADKLILLTRQGRIKVIPSSSLQNLRGRGLQLTKLKAGD 642

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            +  V+   GDH+ +     ++  F +  IP + R
Sbjct: 643 TLGWVLPAQGDHLVLATSRGRVFHFFLPDIPVLGR 677


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/720 (33%), Positives = 387/720 (53%), Gaps = 53/720 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V KS L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             NLL     GE IQ +I++    D            L  V+  G     + SE     R
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
            G   L +   +++  V+   G    ++G +    + F+ + +  M R   GVR  + +D
Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       IL+ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/716 (35%), Positives = 410/716 (57%), Gaps = 56/716 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +K V++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  ++   +
Sbjct: 4   IAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD AAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A  +L  ++++ +DF   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    +A + NP IS+++L+ YI GPDFPT GII   +  I E+Y+ G+G   V
Sbjct: 184 PHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIY-GKNGIKEAYKTGKGKIIV 242

Query: 253 RARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           R+++ +E   +     +++ E+PYQV KS+LIEKIA L+  K+I  + +IRDES +D +R
Sbjct: 243 RSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMR 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K +     +++  ++ L+ ++T F +NM  LS G+ P+ M L  ILKE++ HR++
Sbjct: 303 IVIDIK-KDFISQIILNQLYTLTSLQTSFGINMVALSSGK-PKTMNLKKILKEFIKHRKK 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------EDK 412
           ++ R+  F+++  ++++ +L+G  IA  NI+ II +I+N                  E+ 
Sbjct: 361 IIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKENN 420

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                   F  +  Q  AILN++L  L  LE+ +I  E + L+ +  K+  +L++     
Sbjct: 421 SSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE 480

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR- 531
            +I  E+ E+K+ FS +     R+T    +S+  +  ++  MI KE + V +S  G+++ 
Sbjct: 481 KKIEKELNEIKKKFSDT-----RKTKI--ISKMSEINIED-MIVKETVVVTLSYSGYVKY 532

Query: 532 -------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
                  + K      SA   KE D +   L A++ D IL  S+ G     K Y LP   
Sbjct: 533 QPISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPE-- 590

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             S    G+ I  L+ L   + I T      Y S+  + + ++ G  F+ + S I     
Sbjct: 591 -TSRNARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALG--FVKKTSLIQFKKP 647

Query: 637 KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           +    + ++  +  KL+ V +T   +++ +     K++ FS   I +M R   G+R
Sbjct: 648 RNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIR 703


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 345/602 (57%), Gaps = 67/602 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E +  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M++R           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLARAETENASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E   ++A+   +
Sbjct: 422 EAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I   I  V+E+ S   + G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERITAII--VEELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+++S  L  +S          A   KE D +     A+T D IL  S  G+ Y
Sbjct: 534 VTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 574 TL 575
           ++
Sbjct: 594 SV 595


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/632 (36%), Positives = 362/632 (57%), Gaps = 35/632 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++E Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E   A + +IDN      E ++E+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L  + G + P+V+ L  +L+ +L 
Sbjct: 306 MRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLEYYLE 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423
           H+  V+ RR+ + +     R  IL+GLL A  NIDE+I II   RN    K  ++ RF L
Sbjct: 366 HQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELIDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L   K     I  EI  + 
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKFQAILADRKLLLRVIREEILAIA 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           E +      G  R T       D +T  + +I +E   + ++  G+I        RS   
Sbjct: 486 EKY------GDDRKTSIGYDVYDIST--EDLIPRENTVIAMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +  +   E D ++  L   T   ++  +  G+ Y L    +  +GR   G AI  L
Sbjct: 538 GGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
           + L   + I TA +    Y+    L++ + KG
Sbjct: 598 LQLAPGEKI-TAVIPLRKYEEGHYLMMATKKG 628


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLSDIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L++N
Sbjct: 125 ETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLNN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M++R           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRAESENAAAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 DAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++    I  E+  VK  F      G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--EDLITPQDMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D ++    A+T D +L  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WIKVYEVPQGS 604


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/777 (32%), Positives = 416/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RAR  +E        IV+TEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRARAEIETSSTHDK-IVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR E
Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTLLQTSFSVNNVALVHGR-PRLLNLKDMIKYFVEHRHE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMERFQLTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + ++      + +L++ +     I  E+ EVK  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEILSNDELCRKVITDELIEVKAKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/621 (37%), Positives = 346/621 (55%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++NP  +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNPGATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIAKQGLMERSWDSSLVREMLARA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/633 (36%), Positives = 354/633 (55%), Gaps = 62/633 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE SIE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G  S  I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421
           R++F ++    R  IL+G L+A  NIDE+I+I+R+     + K  ++ RF          
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    VS        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVS---GEVDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
           N G+I   K   VD           +S +  +E D ++    + T D IL ++  G    
Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598

Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            K Y +P G   S +  G  I  L+ L+  + I
Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628


>gi|332668539|ref|YP_004451546.1| DNA gyrase subunit A [Cellulomonas fimi ATCC 484]
 gi|332337576|gb|AEE44159.1| DNA gyrase, A subunit [Cellulomonas fimi ATCC 484]
          Length = 870

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/670 (35%), Positives = 378/670 (56%), Gaps = 64/670 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K +
Sbjct: 13  IEQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRQFSKCS 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D AAA RYTE +M
Sbjct: 73  RVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDDPAAAPRYTECKM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DED VDF D Y+    EP+V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 133 APLSMEMVRDIDEDTVDFGDNYDGRTQEPLVLPARFPNLLVNGSAGIAVGMATNIPPHNL 192

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+PE + E+LL  ++    GPDFPTG  I+  R  I E+YR GRG   +
Sbjct: 193 REVADGVQWYLDHPEATKEELLAALLTRIKGPDFPTGATILGHR-GIDEAYRTGRGSITM 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + DIRDE++     R
Sbjct: 252 RAVVNVEEI-QGRICLVVTELPYQVNPDTLAKKIADLVKENRVTGIADIRDETSGRTGQR 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  + ++  F  NM  L  G VP+ + +D  ++ W AH+ E
Sbjct: 311 LVIVLK-RDAVAKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDAFVRHWTAHQLE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + ++ I +G L A   +DE+IA+IR   + D+ +  ++    + E Q
Sbjct: 369 VIQRRTRYRLRKAEEQIHIYRGYLKALDALDEVIALIRRSPDADEARTGLMELLGVDEVQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNL+LR L  L+  +I    D L A+  + +++L S ++Q   ++ E+RE+ + + 
Sbjct: 429 ANAILNLQLRRLAALQRQEITQRHDELQAQIVEFNAILASDERQRTIVSDELREIVDKYG 488

Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
                  RRTT      EVS  D       +I +E + V I+  G+ +  +S +      
Sbjct: 489 DE-----RRTTILPFDGEVSVED-------LIAEEEMVVTITRGGYAKRTRSDNYRAQRR 536

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAG----------N 579
               +     +E D +       TT   LL  T+       KAY LP G          N
Sbjct: 537 GGKGVRGAQLRE-DDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVAN 595

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           LL+ +  GE I  ++D+ +         Y+    L++ + +G       +E  +N   G 
Sbjct: 596 LLAFQ-PGETIAQVLDVRN---------YEQAEHLVLATQRGLVKKTRLTEYDSNRSGGV 645

Query: 640 TFLKVSSEEK 649
             + +  +E+
Sbjct: 646 IAINLREDEE 655


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 347/615 (56%), Gaps = 72/615 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM Q+   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420
            R  +L+GL +A  NIDE IAII+    P P+                 M++R       
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRAEAENAA 417

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q   IL +RL+ L  LE+ +I  E  +++A+
Sbjct: 418 AGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  + +I  
Sbjct: 478 IADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT--EDLITP 529

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G++        R+ K       A   KE D ++    A+T D IL  S  
Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589

Query: 570 G-----KAYTLPAGN 579
           G     K Y +P G+
Sbjct: 590 GRVYWVKVYEVPQGS 604


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/741 (34%), Positives = 396/741 (53%), Gaps = 80/741 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 AHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII    + + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L + R P+++ L  +L+ +LAHRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLRQMLEYFLAHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSALVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 IMAVITDLLDILARPERITAIIVDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVV 617
            S  G     K Y +P G   S    G  I  +  L+  +    I+    +D+   + + 
Sbjct: 600 FSNRGRLYWLKVYEVPQG---SRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEHFIFMA 656

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSI 675
           +++G       +E  +N RK         E    +   VT G H V +  +  K + F  
Sbjct: 657 TARGTVKKTALTE-FSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDE 715

Query: 676 DQIPEMSR-GKGVRLQSYKDG 695
           + +  M R  +GVR  + +DG
Sbjct: 716 NDVRPMGRQARGVRGMNLEDG 736


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 362/616 (58%), Gaps = 27/616 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 12  DNNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDRPYY 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVY+S+V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 72  KSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSIDGDGAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +++D V+    Y++ + EP V PS++PNLL NG  GIAVG+AT+IP 
Sbjct: 132 ARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  LA IDN EI+  +L++YI GPD PTGGI++   +SI+ +Y  G G    R
Sbjct: 192 HNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILI-GEKSILSAYETGEGKVAYR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   I++TE PY+  KSR+++ I+E+   KR    +  + DIRDES    
Sbjct: 251 AKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESITDIRDESDRSG 310

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+   KN   D  D +++ +F  +D++     NM  L+ G+ P+ M L  I++ ++ 
Sbjct: 311 IRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGK-PETMSLKAIIRYYVE 369

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++E++ RR+   +    +R  I++G + A   +DE+IA IR+    K     ++S+F  
Sbjct: 370 HQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDASENLISKFGF 429

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL L L  L  LE    + E   L    +K++ +L+S K+    +  E++E+ 
Sbjct: 430 SEAQAQAILELMLYRLTGLEIEIFEKEYAQLEKLIKKLEKILSSEKELLKVVKSELKEIS 489

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           + +        RRT         K  +++ +I +E + V IS  G+++   LK++   S 
Sbjct: 490 DKYGND-----RRTEIIHDDNESKIDVEELIIVEE-VMVTISKDGFVKRIPLKNYTRSSS 543

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI-D 595
           +   + ++EGDSLK  ++++T D +L+ +  G  Y     N+  +  +  G+ +  +I  
Sbjct: 544 NPEDIEYREGDSLKYLINSNTKDTLLVFTDKGFMYQTKGINIPEMRWKEKGDRLDEIIKS 603

Query: 596 LN-HNQDIVTAFVYDS 610
           LN  N+ I+ A   D+
Sbjct: 604 LNLDNEKIIAAISIDN 619


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 361/632 (57%), Gaps = 44/632 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 21  IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE ++
Sbjct: 81  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 141 MPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200

Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+    L+E I GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 201 REVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++     R
Sbjct: 260 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVQHQIE 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q + ++ E+  + E + 
Sbjct: 437 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPEKQRSIVSEELAAIVEKYG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V I++ G++        RS K     
Sbjct: 497 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAIQL 592
           +     K+ D L       TT   LL  T+       KAY LP     +GR   G+ +  
Sbjct: 549 VRGTKLKQ-DDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPD----AGRDARGQHVAN 603

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           L+    ++ I        Y++   L++ +  G
Sbjct: 604 LLAFQPDEKIAQVLAIRDYEAAPYLILATKGG 635


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 345/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M+SR           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAETENASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 DAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I   I  V E+ S   + G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M+ R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLMRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E +  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M+SR           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAEQENASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 EAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I   I  V E+ S  ++ G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERITAII--VDELTSIKSEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 351/611 (57%), Gaps = 61/611 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +   + K AR+
Sbjct: 10  SISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNRPYVKCARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMRYTECRLDR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLVE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +   AL L+  P+ +I++L++ I  PDFPTGGII      + E YR GRG   +RA+   
Sbjct: 190 VINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIY-GVSGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE GR G   I+V E+PYQV K  L+E+IAE +  K++  + DIRDES +    V+    
Sbjct: 249 EEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ ++F  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NID+ IAIIR    P   +  ++SR              
Sbjct: 368 FELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVKSMLERT 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 428 GADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKILNEYGD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREV-KEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           ++A+  ++  +L   ++    I  E+++V  E   K+ D+   R +  E++ +D  T  +
Sbjct: 488 VMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDV---RRSEIELNASDLET--E 542

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL
Sbjct: 543 DLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYIL 602

Query: 565 LLSTDGKAYTL 575
             S  G+ Y L
Sbjct: 603 CFSDRGRMYWL 613


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 348/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 348/615 (56%), Gaps = 72/615 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420
            R  +L+GL +A  NIDE IAII+    P P+                 M++R       
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRAETENAA 417

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q   IL +RL+ L  LE+ +I  E  +++A+
Sbjct: 418 AGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  + +I  
Sbjct: 478 IADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT--EDLITP 529

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G++        R+ K       A   KE D ++    A+T D IL  S  
Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589

Query: 570 G-----KAYTLPAGN 579
           G     K Y +P G+
Sbjct: 590 GRVYWVKVYEVPQGS 604


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/738 (34%), Positives = 396/738 (53%), Gaps = 74/738 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 142 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 201

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 202 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 261

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 262 AHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 321

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 322 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 380

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    R
Sbjct: 381 DIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 440

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 441 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 499

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 500 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVRDMLSRA 558

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 559 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 618

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   I  LL+   +     A  + E+  I S   + G  R +  E +  +  T  + 
Sbjct: 619 VMAQ---IADLLDILARPERITAIIVEELTLIRS---EFGDERRSQIEHNATELDT--ED 670

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 671 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 730

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SK
Sbjct: 731 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 790

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678
           G       +E  +N RK         E    +   +T G H V +  +  K + F  + +
Sbjct: 791 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 849

Query: 679 PEMSR-GKGVRLQSYKDG 695
             M R  +GVR  + ++G
Sbjct: 850 RPMGRQARGVRGMNLEEG 867


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +    +
Sbjct: 5   EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 65  KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P 
Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184

Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E  +  +A I+ + +I +E L++Y+  PDFPTGG I      + E++  GRG   +
Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES  + +RI
Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  +  +++  ++ ++ +++ F +N   L  GR P+++ L  ++ E++ HR+EV
Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M   + RF L++ Q 
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +  
Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                   T   E+  A +    +     + + + +S+ G+I        R+     V  
Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L++++ 
Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 593 D-DKVNAFI 600


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +    +
Sbjct: 5   EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 65  KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P 
Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184

Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E  +  +A I+ + +I +E L++Y+  PDFPTGG I      + E++  GRG   +
Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES  + +RI
Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  +  +++  ++ ++ +++ F +N   L  GR P+++ L  ++ E++ HR+EV
Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M   + RF L++ Q 
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +  
Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                   T   E+  A +    +     + + + +S+ G+I        R+     V  
Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L++++ 
Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 593 D-DKVNAFI 600


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/708 (34%), Positives = 391/708 (55%), Gaps = 36/708 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLPTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL+SG GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++ E +L  + ++ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALID P++S +KL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIV-GDSGIREAYTSGKG 244

Query: 249 GFRVRARWCVEEVG--RGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R     EE+   +GS     I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 SIVLRGVAKTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + +++ F   +  L  G+ P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQ-PRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L  R + L RR S+ +   D R+ I+ GLL A   +D++I I+R+       K  + SR
Sbjct: 364 FLKFREQTLNRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL + LR L  LE+  ++ E + L  +   +  LL+  K+    +  ++R
Sbjct: 424 LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQILLSDRKELLKTLKKDLR 483

Query: 481 EVKEIFS---KSTDLGRRRTTFCEVSRADKATLQQAMIEK------EPITVVI---SNRG 528
            +K  ++   ++  L R    F +V   +K  +  A I+       EP   VI   S+RG
Sbjct: 484 SLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNSPDAEPPEEVILDFSHRG 543

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHG 587
           ++R L+       A +        I      TD+ +L++++ GK Y +  G++    G  
Sbjct: 544 YVRRLQPSGKKSKAENGLPDHDFIIQSDLTATDKELLVITSSGKVYPVNVGDIRPTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +         + +V+  +      T ++++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQMVLLTKEGRIKRLTLGELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSR 683
            T LK+  ++++      T  +++ +     +LL F+ D  Q+P M R
Sbjct: 664 ITILKLKEDDELLFTQLTTPKENLILASSGGRLLKFAADDQQLPVMGR 711


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+A
Sbjct: 5   VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR+
Sbjct: 65  RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN+
Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R 
Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V    
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409
            FR++ I  +  +  G+ IA LNIDE+++II++                           
Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422

Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461
              D    V    + LT  QV AIL +RL+ L  LE+ ++++EL++++A   E  KI   
Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILST 482

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           DSLL    +Q             +      L + R T  E S  D+    +++I KE + 
Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 528

Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V ++  G+++ +K  +            A   KE D         T   +L  S  GK Y
Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588

Query: 574 TL 575
            L
Sbjct: 589 KL 590


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/712 (33%), Positives = 379/712 (53%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELSAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +      +T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T               ++  +++G     + 
Sbjct: 606 LPIGTPTS---RGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+   D   V +     + + FS+D +
Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDV 714


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDKFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|332284745|ref|YP_004416656.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
 gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/601 (38%), Positives = 336/601 (55%), Gaps = 62/601 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE R+ ++A  +L  +D+
Sbjct: 65  GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLADIDQ 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ E  L  + N
Sbjct: 125 ETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLYCLRN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           P+ SIE+L+E I  PDFPTGGII      + E YR GRG   +RA+   E++ +G+   I
Sbjct: 185 PDCSIEELIELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFEDMEKGNRQAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V  +PYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    R   P++++ +
Sbjct: 244 IVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVILNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  I++ +L HRREV+ RR+ F+++    R  
Sbjct: 304 LYKNTQLQDTFGMNMVALVDGQ-PRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NID+ I II+    P PV                 M+ R           
Sbjct: 363 VLEGLAVALANIDDFITIIKAAPTP-PVARQELMARSWDSSLVREMLVRADDGVTPGGRA 421

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+E Q   ILN+RL+ L  LE+ +I  E  +++     + 
Sbjct: 422 AYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADLL 481

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I+ E+  +K  FS S    RR       +  D   L   M     + V
Sbjct: 482 DILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPM----DMVV 537

Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S  G+I        R+ K       A   KE D +     A+T D +L  S  G+ Y 
Sbjct: 538 TLSQTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYW 597

Query: 575 L 575
           L
Sbjct: 598 L 598


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ S E+ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N   L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/738 (34%), Positives = 395/738 (53%), Gaps = 74/738 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+
Sbjct: 131 AHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NP+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  IL+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++   E+I  LL+   +     A  + E+  I     + G  R +  E +  +  T  + 
Sbjct: 488 VM---EQIADLLDILARPERITAIIVEELTLI---RAEFGDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678
           G       +E  +N RK         E    +   +T G H V +  +  K + F  + +
Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 679 PEMSR-GKGVRLQSYKDG 695
             M R  +GVR  + ++G
Sbjct: 719 RPMGRQARGVRGMNLEEG 736


>gi|190891755|ref|YP_001978297.1| DNA gyrase, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/703 (34%), Positives = 375/703 (53%), Gaps = 63/703 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 4   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L 
Sbjct: 64  YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLD 123

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 124 DLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIA 183

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +    
Sbjct: 184 LINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDR 242

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +++
Sbjct: 243 EQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 302

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+ F ++    
Sbjct: 303 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR--------------------- 420
           R  +L GL IA  NIDE+I +IR    P+     +M  R                     
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    + 
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+  V++ F        RRT   E+         + +I +E + V +S+ G+I      
Sbjct: 482 DELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLT 533

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
             R+ +      S +  ++ D +      +T   +L  S+ G     K + LP G   S 
Sbjct: 534 TYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS- 592

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T               ++  +++G     + S+ +   R 
Sbjct: 593 --RGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRN 650

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           GK  +K+  E    L V+   +H  V +     + + FS+D +
Sbjct: 651 GKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDV 693


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++NP+ +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/713 (34%), Positives = 379/713 (53%), Gaps = 63/713 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+  MSE+G+D+   + K 
Sbjct: 14  DIEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMSELGIDWNKKYVKC 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R
Sbjct: 74  ARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 134 LQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    +ALI+NP I + +L++ I GPDFPTG +I+  R  I  +Y  GRG   +R  
Sbjct: 194 LVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALIL-GRSGIRSAYETGRGSVIMRGV 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 253 ARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVE 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D+++  ++  + +++ F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR
Sbjct: 313 LKRDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVISRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR----------- 420
           + + ++    R  +L GL IA  NIDE+I +IR    P+     +M  R           
Sbjct: 372 TKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMERRWPAADVESLIR 431

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL  L  L   +I  EL+ + AE      +L+
Sbjct: 432 LIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKIGAEISDYLDILS 491

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RR+   E          + +I +E + V +S+
Sbjct: 492 SRTRIQTIVVDELVAVRDEFGTP-----RRSQIME---GGPDMDDEDLIAREDMVVTVSH 543

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAY 573
            G+I        R+ +      S +  ++ D +     A+T   +L  S+ G     K +
Sbjct: 544 LGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 603

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627
            LP G   S    G+A+  ++ L   + I T               ++  +++G     +
Sbjct: 604 RLPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRNK 660

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678
            S+ +   R GK  +K+  E    L V+     D V +     + + F +D++
Sbjct: 661 LSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEV 713


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/720 (33%), Positives = 387/720 (53%), Gaps = 53/720 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             NLL     GE IQ +I++    D            L  V+  G     + SE     R
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
            G   L +   +++  V+   G    ++G +    + F+ + +  M R   GVR  + +D
Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       IL+ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 352/625 (56%), Gaps = 42/625 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E   L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQD 601
             NLL     GE IQ +I++    D
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD 612



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       IL+ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +    +
Sbjct: 5   EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 65  KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P 
Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184

Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E  +  +A I+ + +I +E L++Y+  PDFPTGG I      + E++  GRG   +
Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES  + +RI
Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  +  +++  ++ ++ +++ F +N   L  GR P+++ L  ++ E++ HR+EV
Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M   + RF L++ Q 
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +  
Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                   T   E+  A +    +     + + + +S+ G+I        R+     V  
Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L++++ 
Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592

Query: 599 NQDIVTAFV 607
           + D V AF+
Sbjct: 593 D-DKVNAFI 600


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 400/698 (57%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ + ++ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N  +L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYVLRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/640 (36%), Positives = 362/640 (56%), Gaps = 35/640 (5%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++   TL  E   ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 1   MTQDTTLPPEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + K AR+VG+VIG  HPHGD +VYD+LVRLAQP+V R+PL+ GQGNFG+   
Sbjct: 61  GGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +L+ + ++ VDF   Y+    EPV+ P++FPNLL NG++GI
Sbjct: 121 DPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+   A   +++P+ + E+    LLE I GPDFPTGG+IV     I
Sbjct: 181 AVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIV-GHAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+YR GRG   +RA   VEE  RG   +VVT++PYQV    L  +IAEL+   RIP + 
Sbjct: 240 EEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIA 299

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           DIRD+S+     R+V+  K  ++ P +++ +++  + ++  F  NM  L +  VP+ + L
Sbjct: 300 DIRDDSSSRTGQRLVISLKRDAV-PKVVLANLYKHTQLQDTFGANMVAL-VDNVPRTLSL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK 414
           D  ++ W+AH+ +V+ RR+ + ++  +RR  IL+GL+ A   +D +IA+IR   + D+ +
Sbjct: 358 DAFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEAR 417

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE   I   +D+L   + +I  L +    +  Q
Sbjct: 418 SGLMELLDVDEVQATAILDMQLRKLAALERQAI---IDDLAKHEAEIADLNDILANESRQ 474

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
            A    E+KEI  K  D   RRT       AD     + +I +E + V I+  G+     
Sbjct: 475 RAIVSEELKEIVDKYGD--ERRTAIVP---ADGDVSIEDLIAEEDVVVTITRGGYAKRTK 529

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGR 584
               RS +     +     ++ D ++      T   +L  +  G+ Y L A  +   +  
Sbjct: 530 TSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAARS 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             G+ +  L+    ++ I        YD+   L++ +  G
Sbjct: 590 ARGQHVANLLAFQPDEKIAQVLALRDYDAAPYLVLATRSG 629


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT++P HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++NP+ +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 336/574 (58%), Gaps = 29/574 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ + L   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K A
Sbjct: 26  VELIELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCA 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+ G GNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFGSPGNDPAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +DE+ VDF   Y+    EP V PS+ PNLL NG +GIAVGMAT+IP HN+
Sbjct: 146 MPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNGATGIAVGMATNIPPHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   AL  +++P  S E+LLE ++    GPDFPTG +IV  R  I ++YR GRG   +
Sbjct: 206 REVASGALWALEHPGASNEELLEALVERIKGPDFPTGALIV-GRRGIEDAYRTGRGSITM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+V+TE+P+QV    L  KIA+L+   RI  + D+RDES+     R
Sbjct: 265 RAVVEVEEI-QGRQCLVITELPFQVNPDNLALKIADLVKDGRIAGIADVRDESSSRTGQR 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+AH+ E
Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 381

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR++FR++  + R  IL+ LL A   ID +IA+IR   + D  +  ++    + E Q
Sbjct: 382 VIVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIRASESADAARTGLMRLLDIDELQ 441

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I SE D L A+  + +++L S  +Q   ++ E+  + E + 
Sbjct: 442 ANAILEMQLRRLAALESARILSEHDELQAKINEYNAILASPARQREIVSEELTAIVEKYG 501

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+T      +D     + +I +E I V I+  G++        RS K     
Sbjct: 502 DE-----RRSTLIP---SDGDLSIEDLIAEEDIVVTITRGGYVKRTRSDLYRSQKRGGKG 553

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +     K+ D +       T + IL  +  G+ Y
Sbjct: 554 VRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVY 587


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/634 (36%), Positives = 368/634 (58%), Gaps = 36/634 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K+  L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSA
Sbjct: 11  IKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKQHKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 71  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +DF++ Y+  D EPVV P++FPNLL NG +GIAVGMAT+IP HN+
Sbjct: 131 SKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ NP+++  +L+E I GPDFPTG I++  +  I ++Y  G+G   VRA+ 
Sbjct: 191 GEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGVVTVRAKT 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  + DES ++   +    
Sbjct: 250 EIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQEGNRIAIEI 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++  + M+T F  NM  +  GR P+++ L  +L  +L H+++V+ RR+
Sbjct: 310 RRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGR-PKLLSLKDMLVAYLDHQQKVVRRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++    R  IL+GL IA  +ID II IIR+ +     K  ++  ++L++ Q  AIL+
Sbjct: 369 EFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLMVDYALSDKQSQAILD 428

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I+ E   LL        +L   ++    I  E+ EV+   SK  D  
Sbjct: 429 MRLVRLTGLERDKIEKEYQGLLTAIADFQDILAKPERIDEIIYTELLEVQ---SKYGDER 485

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHF 545
           R      +V+    +   + +IE+E I V +++ G+I R L+S           +  +  
Sbjct: 486 RTELQIGDVT----SIEDEDLIEEEDIIVSLTHAGYIKRMLQSEFRAQNRGGRGIQGMGV 541

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590
            + D +   +   T D +L  +  GK Y +               P  NLL G   GE+I
Sbjct: 542 NDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGYEVPEYGRTAKGIPVVNLL-GIESGESI 600

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           Q +I++  +    + +++ +T + +V  +  N F
Sbjct: 601 QTVINVRGDASESSDYLFFTTRQGVVKRTPVNEF 634


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/697 (33%), Positives = 398/697 (57%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ S E+ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + V +V  N   L FSI+ +P + S+  GV+  + KD
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKD 689


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/777 (32%), Positives = 417/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RAR  + E G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASIVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKDLIKHFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF L+E Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 271/761 (35%), Positives = 417/761 (54%), Gaps = 49/761 (6%)

Query: 22  LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           LR  +EE     YL YA+S I  RA+PD +DG KPV RRI++AM E+GL     ++KSAR
Sbjct: 11  LRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKSAR 70

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGE +GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD  AA RYTEAR++
Sbjct: 71  IVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARLS 130

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            + E +L+ ++ED VD+   ++E   EP+V PS  PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 131 PLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHNLS 190

Query: 198 EICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           E+ +A   LID  E + +  ++E + GPDFPTGG I   RE I+ +YR GRG   +R R 
Sbjct: 191 EVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTIT-GREGIINAYRTGRGKIVLRGRV 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++ RG   ++VTEIPY V K  LIE IA  +    +  + D+RDES  D   V+   
Sbjct: 250 SIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVIEL 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  DP L+++ ++  + ++T F + +N+  +  VP+ + L  +LK +L HRR+V+ RR+
Sbjct: 310 QRDADPHLVLKQLYSRTPLQTTFGV-INLALVDGVPRELGLIELLKIFLDHRRDVVRRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
           ++R++  + R  I++GL+ A   IDEIIA+I+     +     ++  F  TE Q  AIL+
Sbjct: 369 NYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLMDNFGFTELQAQAILD 428

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +++ EL +LL + E   S+L +     + +  E+ E+K  +  +    
Sbjct: 429 MRLQRLTNLERSKLEEELRHLLKDIEMYHSILENPSVLDSVVKEELTELKRQYGDA---- 484

Query: 494 RRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            R+T   +  V  AD       +I +E I VV+S  G++R        L     K    L
Sbjct: 485 -RKTEIVDELVEVAD-----DELIPEEDIVVVLSKDGYLRRASLGDYHLQGRGGKGIKGL 538

Query: 552 K-----IALHAHTTDR--ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
           K     + + A TT    I L ++ G+ + +  G LL     G G+ +     L  N+ +
Sbjct: 539 KQKDDEVEMFAATTTHHDIFLFTSKGRVFAI-KGYLLPEPKNGKGKHVSSFFTLEENERV 597

Query: 603 VTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           V   + + T      +   + +G A  ++ SE+   TR G+  + +   + +  V   +G
Sbjct: 598 VA--IKEDTMHGARFVFFATERGIAKRLDVSELANLTRAGRRVITLDDGDFIARVRFTSG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--CFKICEGLT--WI 712
            D +  V    + L  S  +   M R  +GVR     +   SDV+  C  + EG+   +I
Sbjct: 656 EDELLFVSAKGQALRTSEQEFRPMGRQARGVRAIRLSE---SDVLVGCEPLQEGMAILFI 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              G     S ++    L  RGG G    +   R+G  + +
Sbjct: 713 SEKGVGKRTSFDEF--PLHHRGGSGVRAMRLSSRTGSLVGA 751


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 244/667 (36%), Positives = 383/667 (57%), Gaps = 38/667 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE++LE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L +   P+VM L  +L+ +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VDNQPKVMNLLEMLQYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR   N  + K  ++ RF L++ 
Sbjct: 365 DVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKRFGLSDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  EI  + E  
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAILADKKLLLGVIKKEILVIAE-- 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
            K  D  R +  F E   +      + +I +E + + ++  G+I+ +   +         
Sbjct: 483 -KYGDDRRTKIGFDEFDIS-----MEDLIPRENVVITMTKLGYIKRMSMDTFKSQNRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +  +GR   G AI  L+ L
Sbjct: 537 GIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
              + I TA +    Y+    L + + KG   +V+++ I   AN RK      V  E+  
Sbjct: 597 MPEEKI-TAIIPLREYEEGKYLFMATEKG---LVKKTPIQDYANVRKTGLAAIVLREDDK 652

Query: 651 KLVVKVT 657
            + VK+T
Sbjct: 653 LIEVKIT 659


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F  + +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 247/691 (35%), Positives = 389/691 (56%), Gaps = 45/691 (6%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  + +  +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW----CIV 269
             +L++Y+ GPDFPTG  I+ +  +I E+Y  GRG   +R    +E + + +      I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D +RIV+  K  S  P +++ +
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSY-PRVVLNN 298

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F  NM  L  G  PQ++ L   L  +L  R E + RR+ ++++  + R  
Sbjct: 299 LYKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDH 357

Query: 389 ILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +L+GLLIA  ++D II +IRN  D P  K  +++ + L+E Q DAIL ++LR L  LE  
Sbjct: 358 LLQGLLIALAHLDSIINLIRNAPDAPTAKGELINSYGLSEVQADAILQMQLRRLTALEAD 417

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E + L  +   +  +L+  ++    I  E  ++K  F+       RRTT   ++ A
Sbjct: 418 KIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFTTP-----RRTT---ITHA 469

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHA 557
           +       +I  E + ++++ +G+I+ +   + +         +    KE D+++  L  
Sbjct: 470 EGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAGAKVKEDDTIEHFLTC 529

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--S 610
              D +L  S  G     KAY +P G+  S    G  I  ++ +   + I +       S
Sbjct: 530 CDHDSVLFFSDRGVVYSLKAYQIPEGSRTS---RGTPIVQMLPIPKEEKITSIVSVSEFS 586

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGDHVAVVGENR 668
           + + LV+ +KG        E  +N R     + +S EE  +++ V +   +   ++G  +
Sbjct: 587 SEEYLVMLTKGGNIKKTALEAFSNIR-ANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQ 645

Query: 669 KLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
            + I      DQ+  + R  +GV+    K G
Sbjct: 646 GMAIHFRCDNDQMRPLGRATRGVKSMKLKTG 676


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/591 (38%), Positives = 349/591 (59%), Gaps = 32/591 (5%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+++ L E+N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+ I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQIL-GRDGIRETF 245

Query: 244 RLGRGGFRVRARWCVEE---VGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + GRG   +R    +E+   +GR     +++TE+P+Q  K+ LIE+IA+L+  K++  + 
Sbjct: 246 KTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRDES  D +RIV+  K R   P +++ ++F L+ ++  F  N+  L  G  P  + L 
Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+       + 
Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            + +   L+  Q DAIL ++LR L  LE  +IK E ++L  +      +LNS ++ +  I
Sbjct: 424 KLQNDHKLSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKINLYQQILNSKERIFEII 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534
             E+ ++ E FS       R+T   ++    D   L    I  E   V+++  G+++ + 
Sbjct: 484 LEELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANERSVVLLTEAGYLKRMP 534

Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  + ++           KE D +K+ +  +  D +LL S  G AY LPA
Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPA 585


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F  + +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 347/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IA+I+    P P+                 M+SR           
Sbjct: 363 VLEGLAVALANIDEFIALIKAAPTP-PIAKQELMSRSWDSSLVREMLSRAETDNASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 EAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I+  I  V+E+ S   + G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERISAII--VEELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/635 (36%), Positives = 355/635 (55%), Gaps = 45/635 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +K A+I G
Sbjct: 12  NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHRKCAKICG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTEAR+T  A
Sbjct: 72  DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VRAR  VEE
Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVRARLHVEE 250

Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D +R+VL  K +
Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+ RR+ +
Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  AIL LR
Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E + LL +      +L+      + I  E++++     K   + RR
Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545
            T   +                E + + IS   +++ +            H V  +    
Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539

Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGRGHGEA 589
           K+G   LK    A T D +L+ +  G+ Y      LP G          N L G   GE 
Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEE 599

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +  ++++ +  +    F++ +T + +V     +AF
Sbjct: 600 LAAILNIKNFDN--AGFLFLATKRGVVKKVSLDAF 632


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 345/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           P+ SI++L+E +  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PDASIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IAII+    P P+                 M+SR           
Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAETENASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 EAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I   I  V E+ S   + G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/777 (32%), Positives = 413/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  E +R
Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E++  + 
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIQNKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+   E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T                + + +   N + + F  + +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 373/669 (55%), Gaps = 38/669 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +++D VD  + +++  SEP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ E L+++I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  + E G     IVVTEIPY V K++LIE IA+L+   R+  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEI-EAGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVNGR-PRLLNLRECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           + HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF
Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNPERCKEVMKEELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
           +   V       +E D  +    A     +L  + +G+ Y +   ++  G     G AIQ
Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            ++ L    D V AF        L +    N   +++  ++  T+KG   KT L+  S  
Sbjct: 589 NMLSLEPG-DSVNAF--------LRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRP 639

Query: 649 KMKLVVKVT 657
           +   V+ + 
Sbjct: 640 RTNGVIAIN 648


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 360/610 (59%), Gaps = 27/610 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  KKSARIVGEV+GK
Sbjct: 14  LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD  VYD+LVR+A PF  RYPLI GQGNFG+ID D  AA RYTEAR+T++AE +L+
Sbjct: 74  YHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V+  D ++    E  V PSK PNL+ NG SGIAVGMAT+IP HN+ E  +A + 
Sbjct: 134 DIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   VR +  VE+ G+  
Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323
             IV+TEIPY V K+ LIE+IA++        + +IRDES    +RIV+  PK+   + +
Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKD--ANEE 309

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+ RR+ +  +  
Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            RR  +++GLL A   I  ++ I+RN    +  +  ++    +TE Q  AIL++RL  L 
Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAKAILDMRLSRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +        RRT   
Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP-----RRT--- 481

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           EV+       ++ +I +E + + +S++G++        RS K     ++     E D ++
Sbjct: 482 EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVE 541

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610
             + A  T   L ++  G+AY L    L  +GR   G  I   ++L   + IV     + 
Sbjct: 542 FVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601

Query: 611 TCKLLVVSSK 620
             + LV+++K
Sbjct: 602 EGRDLVIATK 611


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 360/611 (58%), Gaps = 30/611 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G      ++
Sbjct: 7   EQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTPDKPYR 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGD+AAA RYTE
Sbjct: 67  KSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++ +++  +L  +++D VDF+  ++E + EPVV P++FPNLL NG+SGIAVGMAT+IP 
Sbjct: 127 AKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMATNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E  +   A++DNPEI+I++L ++YI GPDFPT   I+  R  I ++Y+ GRG   V
Sbjct: 187 HNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKR-GIRDAYKTGRGRLIV 245

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVR 310
           R+   +EE+      IVVTEIPY V K+RL+EKIA+L+  K+I  +  I+DES   E VR
Sbjct: 246 RSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGREEPVR 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLA 366
           IV+  K R  +P++++  ++  + ++  F +NM  +         P+ + L  ++  ++A
Sbjct: 306 IVIDLK-RDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDYYIA 364

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSL 423
           H+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I IIRN   E   K  +  RF  
Sbjct: 365 HQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSERFGF 424

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AI+++RL  L  LE  +++SE + LL + +    +L +       I  E+  +K
Sbjct: 425 SDKQSQAIVDMRLGRLTGLEREKLESEYNELLEKIKYFRDVLANEILVHQIIKDELTVIK 484

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
             ++       RRT   ++   +     + +I+++   + +++ G+I+ L + +      
Sbjct: 485 NKYADE-----RRT---KIEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRR 536

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593
               +  L  +E D +K      T   I+  +  G+ Y L A  +  SGR   G AI  L
Sbjct: 537 GGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNL 596

Query: 594 IDLNHNQDIVT 604
           + LN ++ + T
Sbjct: 597 LQLNGDEKVTT 607


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPH
Sbjct: 5   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D+
Sbjct: 65  GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   L+ N
Sbjct: 125 ETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           PE +I++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG    I
Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++++ +
Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++    R  
Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKARERGH 362

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420
           +L+GL +A  NIDE IA+I+    P P+                 M+SR           
Sbjct: 363 VLEGLAVALANIDEFIALIKAAPTP-PIAKQELMSRAWDSSLVREMLSRAETDNASAGGR 421

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L++ Q   IL +RL+ L  LE+ +I  E  +++A+   +
Sbjct: 422 EAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L     +  +I+  I  V E+ S   + G  R +  E++  +  T  + +I  + + 
Sbjct: 482 LDIL----ARPERISAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533

Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570
           V +S+ G++        R+ K       A   KE D +     A+T D IL  S  G   
Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593

Query: 571 --KAYTLPAGN 579
             K Y +P G+
Sbjct: 594 WVKVYEVPQGS 604


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 352/628 (56%), Gaps = 88/628 (14%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NP+ ++++L+E +  PDFPT GII    + + E YR GRG   +RAR   E
Sbjct: 191 VDACLHLLRNPDATVDELIELVPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLDAFLSHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420
            ++    R  +L+GL +A  NIDE IAII+    P         KP        M++R  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLARAE 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE---- 450
                                     + L++ Q   IL +RL+ L  LE+ +I  E    
Sbjct: 429 SDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYREV 488

Query: 451 ------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
                 L ++LA  E+I +++                 +E+ +   + G  R +  E++ 
Sbjct: 489 MGLIADLLDILARPERITTII----------------TEELGAIRAEFGDERRSQIELNA 532

Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556
            +  T  + +I  + + V +S+ G++        R+ K       A   KE D +     
Sbjct: 533 TELDT--EDLITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFV 590

Query: 557 AHTTDRILLLSTDG-----KAYTLPAGN 579
           A+T D IL  S  G     K Y +P G+
Sbjct: 591 ANTHDYILCFSNRGRLYWLKVYEVPQGS 618


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 33  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 92

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 93  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 152

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L++NP+ +I++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 213 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 390

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M++R 
Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 510 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 561

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D +
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 621

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 622 LCFSNRGRVYWIKVYEVPQGS 642


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/626 (36%), Positives = 359/626 (57%), Gaps = 33/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 23  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 83  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++NPE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 203 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 261

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 262 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D+++ F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 321 LVVVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   I+E+IA+IR  +     +  ++    + E Q
Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S ++Q   ++ E+  + + F 
Sbjct: 439 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 499 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610

Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621
            ++ I  + A         LV+++KG
Sbjct: 611 PDEQIAQILAIRDYEAAPYLVLATKG 636


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/500 (42%), Positives = 324/500 (64%), Gaps = 20/500 (4%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI+++M E+GL     ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  RY L+ G GNFG++DGD+AAA RYTEA+M ++A  +L+ +++D V+F   ++ E+ 
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP V PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  + LIDNPE +I +L+  I G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTG  I+  +  I  +Y  G+G   VRA+  +EE       I+VTEIPYQV K++LI
Sbjct: 181 PDFPTGATIM-GKSGIRAAYETGKGRVIVRAKAEIEE-ENNRHRIIVTEIPYQVNKAKLI 238

Query: 284 EKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           E IA+L+  K+I  + D+RDES  E +RIV+  K +  +P++++  ++  + M+  F + 
Sbjct: 239 ENIADLVKDKKIVGISDLRDESDREGMRIVIELK-KDANPNVVLNLLYKHTKMQDTFGVI 297

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L +   PQV+ +  +L  +++ ++EV+ RR++F +   + R  IL+GL IA  NIDE
Sbjct: 298 MLAL-VNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDE 356

Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +I+IIR     +  +  ++ RF+L+E Q  AIL +RLR L  LE  +I+ E   L+   +
Sbjct: 357 VISIIRGSKTSEIARNTLMERFNLSEKQSTAILEMRLRRLTGLERDKIEEEYAELMKLID 416

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQAMIEK 517
            ++S+L S ++    I  E+ ++K      T  G  R T  E  V+  D     + +I++
Sbjct: 417 YLNSILASEEKLLGVIKDELLQIK------TKYGDERRTSIEKVVNEID----IEDLIQE 466

Query: 518 EPITVVISNRGWIRSLKSHS 537
           E + V +++ G+I+ + + +
Sbjct: 467 EEVVVTLTHTGYIKRISADT 486


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 317/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL     F 
Sbjct: 15  EERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM   + L+ + +DE+ VDF   Y+  + EPV  P+ +PNLL NGTSGIAVGMAT++P
Sbjct: 135 ECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIV-GMSGVRDAYETGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  +    +R
Sbjct: 254 RATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLTDREHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN   +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFN 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR  D   + K  ++ RF L+E Q
Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQRFGLSEVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L  E E++  +L+S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTKFDRLELESERDRLNTEIEELTRILDSDAELRKLVSGELAAVAKKFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S A   T     +  +P  V++S+ G +
Sbjct: 492 TP-----RRTVLLESSNA-PVTAVPLEVADDPCRVLLSSTGLL 528


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 354/627 (56%), Gaps = 34/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 211 REVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE++     R
Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 329 LVVVLK-RDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +  +     ++    + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   ++ E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        YD+   L++ +  G
Sbjct: 619 PDESIAQILAIRDYDAAPYLVLATQGG 645


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 329/520 (63%), Gaps = 18/520 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KSA
Sbjct: 4   IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD S+YD++VRL Q +  RYP++  QGNFG+IDGD  AA RYTEARM
Sbjct: 64  SVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEARM 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++AE +L  ++++ +  +  Y+E   EP V P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 124 TRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EIC   LALID P +++  ++E++ GPDFPTGG I  S++ I ++Y  G    +VR + 
Sbjct: 184 TEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI--SKQGIQDAYTTGHASLKVRGKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314
            +EE    S  I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES   E VRIV+ 
Sbjct: 242 RIEEKNNRSQ-IIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   P L++  ++  + +++ F + +N+  +   P+V+PL   ++ +L HRR+V+ R
Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQSTFTV-INLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+IA+IR  +   + +  +++RF L+E Q  AI
Sbjct: 359 RTQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMARFELSEPQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ SE D L     K+ ++L   K  W +I  EIRE+++ +     
Sbjct: 419 LDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGDEKLLWREIKKEIREIRDRYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              RR+T   +S  ++   ++ +I  E + + ++  G+++
Sbjct: 477 ---RRST---ISALEEDISKEDLIAVEDMVITMTEAGYLK 510


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 396/738 (53%), Gaps = 81/738 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 12  VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +  E +L  V E  VDF   ++    EP V P++ P L+ NG+SGIAVGMAT+IP HN
Sbjct: 132 ATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP++  +KL++ I GPDFPTGG I+ + E I E+Y  GRG   +R  
Sbjct: 192 LGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIAT-EGIKEAYTSGRGSIVMRGV 250

Query: 256 WCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
             +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + DIRDES  E +
Sbjct: 251 AKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGI 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P++++ +++  +D+ ++F      L +   P+ + L  IL+E+L  R 
Sbjct: 311 RVVIELK-REATPEVVLHNLYQHTDLMSKFGAIFLAL-VNSQPRQLSLKQILEEFLGFRE 368

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           + L RR    ++  +RR  ++ GLL A   +DE+I I+RN       K  + +R   +  
Sbjct: 369 QTLLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETRLDFSTE 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL + LR L  LE  +++ E   L A+ +++  LL+   +    +  E+R +K  +
Sbjct: 429 QADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLKKELRSLKRRY 488

Query: 487 SKSTDLGRRRTTFCE----------------VSRADKAT----LQQAMIEKEPITVVISN 526
           S       RRT                    V    KAT    L+  +   E   V ++ 
Sbjct: 489 SDP-----RRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETLVEMTL 543

Query: 527 RGWIRSLKSHSVDLSALHFKEG------DSLKIALHAHTT-DRILLLSTDGKAYTLPAGN 579
           RG++R +  H  +LS    +E       D   +  +  TT + +++++  GKAY L   +
Sbjct: 544 RGYVRRVTPH--NLSRPQSREDITIEAIDDFPVTSYLTTTAETLVIINRMGKAYPLNVAD 601

Query: 580 L--LSGRGHGEAIQLLIDLNHNQD--------IVTAFV---------------------Y 608
           +  +S +  G  +  L+  +  +D        IV AF+                     +
Sbjct: 602 IPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDADQRERAF 661

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGEN 667
                L+++S++G    +  ++ +  + +G T +K+   +++    +  TGD V +    
Sbjct: 662 SDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLATSG 721

Query: 668 RKLLIFSI--DQIPEMSR 683
            +LL   I  DQIP M R
Sbjct: 722 GRLLRLDINADQIPVMGR 739


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/483 (42%), Positives = 308/483 (63%), Gaps = 12/483 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIGK
Sbjct: 78  MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIGK 137

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L+
Sbjct: 138 YHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 197

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +D VD++  Y+E  +EPV  P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA   
Sbjct: 198 DLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATCY 257

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP+ ++++L++ + GPDFPTG II+ S   I +SY  GRG   VRA+  VE    G 
Sbjct: 258 LIDNPDATVDELMQIMPGPDFPTGAIIMGS-AGIKQSYETGRGSITVRAKAHVESTKTGR 316

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             +V TEIPY V K  L EKIA+L+  KRI  + D+RDES +  +R+V+  K + + P +
Sbjct: 317 SRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELK-KGVIPQV 375

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F  N N+  +  VP+ + L  +L+ ++ H+ +V+ RR+ F ++   
Sbjct: 376 VLNNLYKYTSLQTTFGAN-NLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQ 434

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G L+A  +IDE+I+IIR+   + +    ++ RF  T  Q  AIL ++LR L  
Sbjct: 435 ARAHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIERFGFTPEQTTAILEMKLRRLTG 494

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ ELD L       + LL   ++    I  E+RE+ + F       +RRT   +
Sbjct: 495 LERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREISKKFGD-----KRRTEISQ 549

Query: 502 VSR 504
           V +
Sbjct: 550 VEK 552


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/592 (39%), Positives = 361/592 (60%), Gaps = 30/592 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +V
Sbjct: 28  VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 87

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ ++
Sbjct: 88  GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEKL 147

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 148 SDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ LI+NP+ ++  L+ +I GPDFPT G I   R+ I  +Y  GRG  +VRAR  VE
Sbjct: 208 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGFI-HGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
              +     IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ E +RIV+  K 
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++   +++ +++  + M+  F + M  +  G+ P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 327 DAM-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRILTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I   ++ D  +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  +   +D +T  + +I +E + V +S+ G++        R+ K      +    +
Sbjct: 500 -RRTEIQGEASDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQL 592
           + D L+    A T   +L+ S  GK Y L      PAG    G+     +QL
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQL 608


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/720 (32%), Positives = 387/720 (53%), Gaps = 53/720 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + ++  F +NM  +  G  P  + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII IIR   N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++ F        RRT   E   VS  D     + +IE++ + + +++ G+I+ + +    
Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528

Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576
                   +  +  ++ D +   + + T D +L  +  GK Y+               LP
Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             NLL     GE IQ +I++    D            L  V+  G     + SE     R
Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694
            G   L +   +++  V+   G    ++G +    + F+ + +  M R   GVR  + +D
Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  ++GD L   L       IL+ +  G A T    ++ S  G   A    I+L  N
Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656
             +V + + +   ++LV+S KG       SE     R GK     +  EK   +  V  V
Sbjct: 700 DYVVGSDILEPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            GD  + ++     ++ F +D + +  R   GVRL    DG
Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 357/584 (61%), Gaps = 30/584 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +V
Sbjct: 29  VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 88

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ ++
Sbjct: 89  GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLERL 148

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 149 SDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 208

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ LI+NP+ ++  L+ +I GPDFPT G I   R+ I  +Y  GRG  +VRAR  VE
Sbjct: 209 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGFI-HGRDGIRAAYEKGRGTIQVRARTVVE 267

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
                    IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ E +RIV+  K 
Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++   +++ +++  + M+  F + M  +  G+ P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 328 DAM-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRILTLKEMLERFVAHRRDVVTRRTR 385

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I   ++ D  +  M++RF+L+E Q  AIL +
Sbjct: 386 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 445

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 446 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 500

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  +   +D +T  + +I +E + V +S+ G++        R+ K      +    +
Sbjct: 501 -RRTEIQGEASDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGR 584
           + D L+    A T   +L+ S  GK Y L      PAG    G+
Sbjct: 558 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/635 (36%), Positives = 355/635 (55%), Gaps = 45/635 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +K A+I G
Sbjct: 12  NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCAKICG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTEAR+T  A
Sbjct: 72  DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VRAR  VEE
Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVRARLHVEE 250

Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D +R+VL  K +
Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+ RR+ +
Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  AIL LR
Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E + LL +      +L+      + I  E++++     K   + RR
Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545
            T   +                E + + IS   +++ +            H V  +    
Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539

Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGRGHGEA 589
           K+G   LK    A T D +L+ +  G+ Y      LP G          N L G   GE 
Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEE 599

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +  ++++ +  +    F++ +T + +V     +AF
Sbjct: 600 LAAILNIKNFDN--AGFLFLATKRGVVKKVSLDAF 632


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 394/714 (55%), Gaps = 43/714 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L++Y+ GPDFPTG  I+ +  +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGRGSW----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + + +      I++TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 VTMRGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGE-PQLLTLKNFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R   + RR+ ++++  + R  IL+GLLIA  ++D II  IR+  D P  K  +++ + 
Sbjct: 360 DFRIATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITNYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + L  +   +  +L+  ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQDILDRRERVLEIIETEVTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K  F+       RRT    ++ A+       +I  E + ++++ +G+I+ +  ++ +   
Sbjct: 480 KTQFATP-----RRTI---ITHAEGDIDDIDLIANEKVLILLTKQGYIKRMPVNTFEAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                 +    K+ D+++  L     D +L  S  G     + Y +P G+  S    G  
Sbjct: 532 RATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIGSRTS---RGTP 588

Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           I  ++ +   + I +    D  ++ + LV+ +KG        E  +N R     + +S E
Sbjct: 589 IVQMLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTALEAFSNIR-ANGLIAISLE 647

Query: 648 E--KMKLVVKVTGDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
           E  +++ V +   +   ++G    + I    + DQ+  + R  +GV+    K G
Sbjct: 648 EGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPG 701


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/610 (36%), Positives = 351/610 (57%), Gaps = 65/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +++P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+++P+ SI++L+E +  PDFPT GI+    + + + YR GRG   +RA+   E
Sbjct: 191 VDACQHLLNHPQASIDELIEIVPAPDFPTAGIVY-GVQGVRDGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ +
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQ-PKLLNLRELLECFLSHRREVVTRRTLY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE IAII+    P P+                 M+SR 
Sbjct: 369 ELRRARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQALMTRAWDSALVRDMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 QGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    IA E+  +K  F      G  R +  E++  +  T  + 
Sbjct: 488 VMAQIADLLDILAKPERIRTIIADELVAIKAEF------GDPRRSQIELNATELGT--ED 539

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+I        R+ K       A+  K+ D ++    A+T D IL 
Sbjct: 540 LITPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILC 599

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 600 FSNRGRVYWL 609


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/571 (36%), Positives = 346/571 (60%), Gaps = 34/571 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   +  YA+S I +RA+PD RDG KPVHRRI+++M ++G+    A KKSAR+VG+V+GK
Sbjct: 24  MRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARVVGDVLGK 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD + YDS VR+AQ +  R+PLI GQGNFG+IDGD+AAA RYTE R++++   +  
Sbjct: 84  YHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLSKLGTRLFA 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDFRD ++  + EP V P  +PNLL NG+ GIAVGMATS+P HN++E  +A LA
Sbjct: 144 DIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRETADAFLA 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNPEI+  ++ +++ GPDFPTGGI+    +  +++   GRG  ++R++W VE+  RG 
Sbjct: 204 WLDNPEITTREIAQHMPGPDFPTGGIL-HDLDGYIQALDTGRGAVKLRSQWTVEDRPRGG 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             +V+ +IPY V K++L+E+IAEL+  K+I  + D+RDES  + +RIVL  K R  + + 
Sbjct: 263 SRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIK-REFEAEA 321

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +   +  ++ +ET    N+  L +G+ P  + +  + + + AHR EV+ RR+ F +    
Sbjct: 322 IAFQLVTMTQLETSVRYNIMAL-VGQTPMQLGVRDLFEHFRAHRIEVIQRRTQFDLDRAL 380

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+ IL+GLL+A   +DE IA IR   + D+ +  ++    +   Q  AIL+++L+ L  
Sbjct: 381 DRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQAQAILDMKLQKLTG 440

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTF 499
           L+   I+ E D L AE   +  +L   ++Q   +  E+ ++  +    + T++    T+ 
Sbjct: 441 LQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEID---TSL 497

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSL 551
            +VS AD       +I +E + ++ + +G+++ + +  ++         S +   E D L
Sbjct: 498 SKVSAAD-------LIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGE-DDL 549

Query: 552 KIALHA-HTTDRILLLSTDG-----KAYTLP 576
               HA H+ D ++ L+  G     KAY +P
Sbjct: 550 VTTFHAGHSHDTLIALTDSGQVHAIKAYDIP 580


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/713 (36%), Positives = 377/713 (52%), Gaps = 62/713 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+E YL YA+S I  RA+PD RDG KP  RRI+ AM ++GL  G +  K A IVGE + +
Sbjct: 25  LKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAMLDLGLTPGGSTSKCAGIVGETMKR 84

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y +L R+AQ +  R+ L++GQGNFG+I G   AA RYTEA+++ VA  +L 
Sbjct: 85  YHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSIHGLPPAAMRYTEAKLSPVAAEMLD 144

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +  D VDF+ +Y+E+  EP V P++FPNLL NG+ GIAVGMATSIP HN+ E+C+A +A
Sbjct: 145 DIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSGGIAVGMATSIPPHNLGEVCDALIA 204

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP I  E L+E + GPDFPTGG+I   R  I E+Y  GRG   +RA+  VEE   G 
Sbjct: 205 LIDNPAIDFEDLIEKLPGPDFPTGGVIC-GRMGIREAYLTGRGRIVLRAKHVVEETRDGR 263

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IV TEIPYQ+ K  L++K+ +L+   RI  + D+ DES   + VRIV+  K R+ DP+
Sbjct: 264 TQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVVDESDRRQPVRIVVKLK-RNEDPN 322

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  S ++  F + M  L  GR P+ + L  +LK +L HR  V+ RR++F ++  
Sbjct: 323 VILNQLYQYSPLQDTFGVIMLALVDGR-PKTLTLRELLKIYLDHRANVIRRRTAFLLRRD 381

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------PVMVSRF 421
             R  +++GLLIA   IDEII IIR+   P                       P   +  
Sbjct: 382 RARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMGMAVGPDVMRRALNDPEAQATT 441

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LT NQ DAIL +RL+ L  LE  ++ +E   L A     + +L    +    I  ++ E
Sbjct: 442 GLTRNQADAILAMRLQQLTGLELDKLVAEYRELRAAIADAEDILAREVRVREIIKADLEE 501

Query: 482 VKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +K  ++       RRT     E+   DK    +A+I +E + V I++ G+I+ L   +  
Sbjct: 502 LKRKYADP-----RRTVISDEELGSYDK----EALIREEYMVVTITDGGYIKRLPPSTYR 552

Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                    +A   KEGD L     A T D +L  +  G     K Y +P   +      
Sbjct: 553 AQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLIHWLKVYDVP---IAPRTAT 609

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G AI  L++L   + I        +     L + + +G       S      R G   L 
Sbjct: 610 GRAIVNLLELREGERITGVIPVRRFPDNEFLFMATRRGTVKKTPLSAYSRPQRGGIIALG 669

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691
           +   +++  V +   GDHV +   N   + F    +  M R     +G+RL+ 
Sbjct: 670 LEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPMGRPACGVRGIRLEG 722


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/772 (32%), Positives = 429/772 (55%), Gaps = 54/772 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ M ++G+     +KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E  +A  A I+N +ISIE+++EYI  PDFPTGGII    E + +++  GRG   +RA
Sbjct: 185 NLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIY-GYEGVKKAFYTGRGRIVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +EE+ +G  CI+V EIPYQV K+ +I +  EL+   ++  +  IRDES  + +RIV 
Sbjct: 244 KVHLEEI-QGRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  + +P +L+ ++F  + ++T F +N   L  G+ P  + +  +++ ++ HR++V+ 
Sbjct: 303 LLKQNT-NPHILLNNLFKYTSLQTYFNVNNIALVKGK-PVQLNIKDLIQHFVDHRQDVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDA 430
           RR+ + ++    R+  L G L    ++D++I +I+ ++D  +    ++  F L+ENQ  +
Sbjct: 361 RRTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIKMFKLSENQSRS 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL++L  LE  +IK E + L+   +KI  L N   Q   ++    +E+ +I  K  
Sbjct: 421 ILDMRLQNLTSLELKKIKKEYEELV---KKIAYLKNVLIQHSIRMQIIKKELLDIQDKYQ 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSA 542
           D  +RRT   ++         + +IE E + + IS+ G+I+  SL  +       +    
Sbjct: 478 D--KRRT---QIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRTSLSEYKRQGRGGIGNRG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597
              +E D  K  L A     +L  +  GK      Y +P G+ +S    G AIQ +I L 
Sbjct: 533 ASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSKIS---KGRAIQNMIHLQ 589

Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644
            + D V A++         Y     +++V+ KG   I++++ +   +R  K  +      
Sbjct: 590 PD-DKVNAYILTGDLTNKKYVQNHYVMMVTQKG---IIKKTSLENYSRPRKDGINAIVIR 645

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700
             +  ++ ++     HV +  ++ K++ FS  ++    R     +G+ L   +D  I  +
Sbjct: 646 KGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRATGRNSSGVRGINLSISEDTVIG-M 704

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           IC +  E    +  + + + +  N     +  RGG G        ++G  +S
Sbjct: 705 ICVEGQEKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQKTGSLIS 756


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/712 (33%), Positives = 379/712 (53%), Gaps = 63/712 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I +  L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420
            F ++    R  +L GL IA  NIDE+I +IR    P+     +M  R            
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
           G+I        R+ +      S +  ++ D +      +T   +L  S+ G     K + 
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628
           LP G   S    G+A+  ++ L   + I T               ++  +++G     + 
Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKL 662

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678
           S+ +   R GK  +K+  E    L V+     D V +     + + FS+D +
Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDV 714


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/523 (41%), Positives = 322/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D  + A  +R
Sbjct: 255 RATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL++ Q
Sbjct: 373 VVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKYDRIELESEKDRLNAEIEELSRILDSDAELRKLVSAELAAVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRTT  E S A  A +    +  +P  V++S+ G +
Sbjct: 492 -GTD---RRTTLLESSGAPVAAV-PLQVADDPCRVLLSSTGLL 529


>gi|332830576|gb|EGK03190.1| DNA gyrase, A subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 863

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/717 (33%), Positives = 410/717 (57%), Gaps = 44/717 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  MSE+G       
Sbjct: 4   TEDRIIKINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMSELGNASNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGD  AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDMPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLKEPTVLPTRIPNLLINGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +A I+N +I    L++YI  PDFP+GG I    + +++++  GRG   +
Sbjct: 184 PHNMTEAINATIAYIENKDIDTAGLMQYIKAPDFPSGGFIY-GYQGVIDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           R R  +E  G     IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES  + +RI
Sbjct: 243 RGRAEIEMEG-NHEKIVITEIPYLVNKAELIKHIADLVGEKRLEGISNVNDESDRQGMRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  + ++++  ++ L+ +++ F +N   L  GR P+ + L  ++  ++ HR +V
Sbjct: 302 VVDIK-RDANANVVLNKLYKLTALQSSFSVNNIALVKGR-PKTLNLKEMIGFFVEHRIDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL+IA  NIDE+IAIIR    P+     ++ RF+L+E Q 
Sbjct: 360 VTRRTIFELRKAEERAHILEGLIIASDNIDEVIAIIRASKSPQEAIERLIERFNLSEIQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  LE+ ++++E D +      ++ +L + + +   I  E+ EV++ +  
Sbjct: 420 RAIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILINEELRMKVITDELIEVRDKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
           +     RRT   E+  A +    +     + + + IS+ G+I        R+     V  
Sbjct: 480 A-----RRT---EIVYASEELNPEDFYSNDEMIITISHLGYIKRTPLSEFRAQNRGGVGA 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + +LL +  GK Y L   ++  G     G AIQ L++++ 
Sbjct: 532 KGSETRDTDFIEHIYPASMHNYMLLFTQKGKCYWLRVFDIPEGTKNSKGRAIQNLLNIDS 591

Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646
           + D VTAFV         + ++  L+  + +G   +++++ + A +R    G   + +  
Sbjct: 592 D-DKVTAFVRVRGFSDTEFINSHYLIFCTKEG---VIKKTSLEAYSRPRQNGVNAITIRE 647

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           E+K+  V+   G+  + +   N + + F+   +  M R   GVR     + G  +VI
Sbjct: 648 EDKVIEVLMTDGESEILLANRNGRAIRFNEKDVRVMGRTATGVRGMRLDEDGQDEVI 704


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/754 (34%), Positives = 415/754 (55%), Gaps = 50/754 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V +   +++ YL YA+S I  RA+PD RDG KPV RRI++AM +MGL   A ++KSA
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VY+++ RLAQ F  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  +D + VDF D ++    EP V P+  PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE--SIVESYRLGRGGF 250
            E+ +A   ++D      EI +  L+ +I GPDFPTGGI++++ E   ++ +Y  G+G  
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +R +   E++GRG   +++TE+PYQ  K+ LIE+IAEL+    +  + D+RDES  + +
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K +  + +  + +++  + +++ F + +  L  G  P+++ L   L+ +L HR 
Sbjct: 306 RIVIELK-QGAEVETTIRTLYHRTPLQSTFGIILLALVDGE-PRLLTLKQALRVFLEHRI 363

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
            V+ RRS + +     R  IL+GL +A  N+DE+I +IRN    ++ +  ++ RF L+E 
Sbjct: 364 VVVRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKRFKLSEI 423

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I+ E   + A+ + ++SLL S K+    +  E+ ++KE +
Sbjct: 424 QAQAILDMQLRRLASLERKKIEEEYREVTAQIKALESLLASAKKIRLAVKEELLKMKEQY 483

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  RRRT    V+   +  + Q +   E   +  +++ W+  +    V  +A    
Sbjct: 484 GD-----RRRTQI--VTLEGETAIHQFLTADE---MAPADKVWVGVMADGRVGRTA---G 530

Query: 547 EGDSLKIALH---AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
           EG     ALH   A T   ++L +  G+A  L  G L  +     G  +     L+    
Sbjct: 531 EGLPATPALHCLRASTRAVLILANAQGQASALSVGALPVVERWQDGMPLHKASALSEGDR 590

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +V A      D      +++   NA + + S  E+   + +  T +KV+ E+++     +
Sbjct: 591 VVLALALEPDDPKTDRYLLTVTRNALVKKSSLEELPGPSAQKFTLVKVNPEDEL-----L 645

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           TG  V   G++  LL+ +       S  + VR       G   V+  K+ EG      +G
Sbjct: 646 TG--VVTEGQDEVLLLTAGGMAIRFSESE-VRPMGLVAAG---VLGMKLTEG---DQVSG 696

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              N  E D+L +    G  G +    FP  G++
Sbjct: 697 LVLNPQEKDIL-FACSDGTTGRIAGADFPLQGRY 729


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 255/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG I      + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYMTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RA+  +E        IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  E +R
Sbjct: 241 MRAKAEIETSSTHDK-IVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R  +  +++  ++ ++ ++T F +N   L  GR P+++ L  ++K ++ HR +
Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P      ++ RF LTE Q
Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K    
Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIK---- 473

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
             T  G  R +  E+  + +    +     + + + IS+ G+I        R+     V 
Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++
Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654
            + D V A+        L V +  +   +    ++  T+ G   KT L+  S  +   V 
Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640

Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +T              GD+ + +   N + + F    +  M R   GVR  +  + G  
Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700

Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   IC K  E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 701 EVVGMICIKDPETETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/398 (47%), Positives = 279/398 (70%), Gaps = 4/398 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R++ 
Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV+  
Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  ++  ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ RR
Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           + F ++    R  IL+GL +A  NIDEII +IR    P
Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATP 402


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 259/696 (37%), Positives = 394/696 (56%), Gaps = 50/696 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   +E+ +L YA+S I  RA+PDL+DG KPVHRRII++  +  L   A FKKSA +VG
Sbjct: 26  SLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNSAKFKKSAALVG 85

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD S+Y++LVR+AQ F  RYPLI GQGNFG+IDGDS AA RYTEAR++++ 
Sbjct: 86  TVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAMRYTEARLSKLG 145

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E  L G+DE+ VDF D Y++   EPVV P+  PNLL NG++GIAVG+AT+IP HN++E+ 
Sbjct: 146 EYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLATNIPPHNIREVL 205

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGFRVRARWCVE 259
            A L LI NP  S   LL+YI GPDFPTGG I   R S V  Y   G G F +R++  VE
Sbjct: 206 NAVLDLIKNPNFSELDLLQYITGPDFPTGGEIF--RYSGVRDYFSTGSGKFILRSKIEVE 263

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-----IPLLED----IRDESA-EDV 309
           E  + +  +++ EIPY V+K+++IE I +LI   +     +PLL D    IRDES  E +
Sbjct: 264 EQVKKNL-LIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVEIRDESNLEGI 322

Query: 310 RIVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           R+V+  + RS  P  +++ +++  + ++T + +N+ VL  G+ P+ + L  +LK +L H+
Sbjct: 323 RLVI--ECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGK-PERISLLQLLKLYLEHQ 379

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E+L RR+ F++  + +R+ IL+G L    +I E I +I   D P+  + +R+SL++ Q+
Sbjct: 380 LEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEEDLRARYSLSDEQL 439

Query: 429 DAILNLRLRSLRKLEEYQIKSEL---DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           D I  L + SL+K+   +++ EL    +L   KE   S+LNS  +     + ++ E+++ 
Sbjct: 440 DDIFRLTVGSLKKISISKLQEELVTKTDLSIFKE---SILNSDDKLREVFSEKLIELRDK 496

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--RSLKSHSVDL--- 540
           F       RR     E S A        +   +   + +S+RG++  R L ++ +     
Sbjct: 497 FGDD----RRTRVNMEASGAIDYC---ELFHFQKTVISLSHRGYLSQRPLSTYKLHKRGG 549

Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGE-AIQLL 593
                A H+K+ D  K+ L  H  D +L  S  GK Y   A   NL  G+        +L
Sbjct: 550 SGKEGAFHYKD-DKPKMFLVCHGKDDVLFFSDSGKVYKKKAYEMNLREGKNKATITYNVL 608

Query: 594 IDLNHNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             L+  + IVT        Y     LL  +SKG       S      + GK  + +   +
Sbjct: 609 PGLSKGEKIVTIIALPEGSYGDNKYLLFATSKGLVKRCSMSLFEKINKNGKVAITLRDGD 668

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            +K V+ +  D HV +  ++ +++ F   +I   SR
Sbjct: 669 SLKFVITLENDSHVCLASDSGRMVKFLASEIRPSSR 704


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 267/789 (33%), Positives = 414/789 (52%), Gaps = 84/789 (10%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++  TL E  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++ +E 
Sbjct: 1   MADETTLAEPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  ++KSARIVG+V+GK HPHGD ++YD+L R+AQ +  R PLI GQGNFG++D D
Sbjct: 61  GFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +VA  +L  +D+D VDF+  Y+  + EP V P+++PNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA ++N  I++E+L E +  PDFPTG +I+  R     +Y+
Sbjct: 181 VGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALIL-GRSGARSAYQ 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VR+R  +EE+      IV+TEIPYQ  K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDE 299

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  E VRIV+  K R   P++++  ++  +  +T FP NM  +  GR P+++ L  I++ 
Sbjct: 300 SNREGVRIVIDLK-RDATPEVVLNQLWRHTPAQTSFPANMLAIRGGR-PELLNLRDIIQA 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           ++  R +V+ RRS F +     R  IL GL+IA  N+DE++ IIR    P   +  +++R
Sbjct: 358 FVQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAR 417

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L+E QV AIL+LRL  L  L   +I  EL  L 
Sbjct: 418 EWPIAEIAPYIRLVEAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLA 477

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L +  + +  +  E+  +++ F+       RR+   E++ A      + +I
Sbjct: 478 DSITELLEILANRVKLYEVMRGELVAIRDQFATP-----RRS---EIAAAADGIDDEDLI 529

Query: 516 EKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           E+E + V ++ +G+I        R+        S +  K+ D +       T   +L  S
Sbjct: 530 EREDMVVTVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFS 589

Query: 568 TDGKAY-----TLPAG----------NLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDST 611
             GK Y      LP G          NLL     GE I  ++ L  ++ +     V  +T
Sbjct: 590 NHGKVYRYKVWRLPEGGPATRGRPMVNLLP-LAPGEVISTVLPLPEDEAEWGKLHVMFAT 648

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENR 668
            K  V  +  +AF    + + +N   GK  ++   E + +L+ V + G  D V +     
Sbjct: 649 AKGAVRRNSMDAF----TNVPSN---GKIAMRFDDESEDRLIGVALLGAEDDVLLATRCG 701

Query: 669 KLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           + + F+ D + E       GVR  + K  G  +VI   +   +        +Y R     
Sbjct: 702 RAIRFAADDVREFQSRTSTGVRGIALK--GEDEVISLSVLHRVGTTQEEREAYLR----F 755

Query: 727 LGWLGKRGG 735
             W G++ G
Sbjct: 756 APWKGEKEG 764


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 347/615 (56%), Gaps = 72/615 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420
            R  +L+GL +A  NIDE IAII+    P P+                 M++R       
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRAETENAA 417

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q   IL +RL+ L  LE+ +I  E  +++A+
Sbjct: 418 AGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  + +I  
Sbjct: 478 IADLLDILARPERITVMIGEELTAVKAEF------GDARRSKIELNATELNT--EDLITP 529

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G++        R+ K       A   KE D ++    A+T D IL  S  
Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589

Query: 570 G-----KAYTLPAGN 579
           G     K Y +P G+
Sbjct: 590 GRVYWVKVYEVPQGS 604


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/712 (35%), Positives = 389/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+   + +  K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  AIL +RL+ L  +E+ + + +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I+ E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQHEEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627
            L LS  +G G  I  ++ L  N+ I             +   ++  ++KGN   + +++
Sbjct: 597 KLPLSNPQGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLD 656

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
             +I +N   GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESL 705


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 272/811 (33%), Positives = 422/811 (52%), Gaps = 95/811 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L ++ +P+ ++++++E I  PDFPT GII      + E YR GRG   +RAR   E
Sbjct: 191 VDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLTRTR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L+E Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 429 ADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A  E +  +L+  ++    I  E+  +K  F +   LG RR T  E S  D +T  + 
Sbjct: 489 IMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHK-LGMRR-TLVEHSAQDLST--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608
            S  G+ Y L     PAG+  S RG           GE I +++ L  +     A  FV+
Sbjct: 605 FSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVF 663

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665
            +T    V  +  + F        +N RKG   + V+ ++   L+      G H V +  
Sbjct: 664 MATSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGQHDVMLFS 714

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNRS 722
           +  K + F  + +  + R  +GVR    +DG    VI   + E  T   + +    Y + 
Sbjct: 715 DGGKAVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGKR 772

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +      RG  G +  +   R+GK +++
Sbjct: 773 TSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/588 (38%), Positives = 336/588 (57%), Gaps = 30/588 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +K A+I G
Sbjct: 12  NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCAKICG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTEAR+T  A
Sbjct: 72  DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VRAR  VEE
Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSAYTTGRGKIKVRARLHVEE 250

Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D +R+VL  K +
Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+ RR+ +
Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  AIL LR
Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  +I+ E + LL +      +L+      + I  E++++     K   + RR
Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545
            T   +                E + + IS   +++ +            H V  +    
Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539

Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
           K+G   LK    A T D +L+ +  G+ Y L    L  G  R  G+ I
Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLKEILQCFLSHRREVLTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAII+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK       + G  R +  E++  +  T  
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELNAVK------VEFGDVRRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/695 (34%), Positives = 395/695 (56%), Gaps = 56/695 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N++   + N+  + +  A+ + Y+ YA+   K+RA+PD+RDG KPVHRRII+    +   
Sbjct: 4   NTSIPEDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGAYMLKAF 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  + P+I G GN+G+ DGDSAA
Sbjct: 64  PERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQDGDSAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +++ +++D V+  D Y+  + EP V P+++PNLL NG  GIAVG+
Sbjct: 124 AMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ EAA A ID  +IS EKL+EYI GPD PTGGII+  R+S++ +Y  G 
Sbjct: 184 ATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIII-GRQSLICAYTTGE 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLE---DIRD 303
           G   +RA+  +E++  G   IV+TE PY+  K+RL++ I+E+   KR I  LE   DIRD
Sbjct: 243 GKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPISDIRD 302

Query: 304 ESAED-VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ES  + +R V+  K +S D +L   +++ +   +D++     NM  L+ G+ P  + L  
Sbjct: 303 ESDRNGIRAVIEFK-KSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGK-PVTLGLKD 360

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           ILK ++ ++++++ RR+   ++    R  I++G + A   +DEII  IR+    K     
Sbjct: 361 ILKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDAASN 420

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ +F  T  Q +AIL L L  L  LE    + E   LL   +K+  +L+S K+    I 
Sbjct: 421 LMEKFEFTREQSEAILELMLYRLTGLEIVSFEKEHRELLKIIKKLTKILDSEKEILKVIK 480

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLK 534
            E+ E+ E + +      R+T   E     K  +++ +++ E I + IS   +I+  SLK
Sbjct: 481 KELAEIAEKYGE-----ERKTVIIEEEEEAKIDVKEILVD-EDIVITISKEAFIKRISLK 534

Query: 535 SH---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S+   S ++  + ++EGD  K  +++ T D I+  +  G  Y +   ++     R  GE 
Sbjct: 535 SYNRSSREVKDIEYREGDFNKYVINSSTKDTIMFFTDKGNMYKIKGMDIPEFKWREKGEK 594

Query: 590 IQLL---IDLNHNQDIVTAFVYDS----------TCKLLVVSSKGNAFIVEESEIIA--- 633
           ++ +   IDL+  ++IV  +  D           T    +  ++ NAF+ + ++++A   
Sbjct: 595 LENIIKGIDLSE-ENIVAVYSIDDFSSPQDFIFFTNMAGIKRTETNAFVTKYTKLMALRL 653

Query: 634 ------------NTRKGKTFLKVSSEEKMKLVVKV 656
                       N  +   F+KV ++  +K  VKV
Sbjct: 654 KKEEELIDVKLVNRNESLNFIKVETKIGLKFTVKV 688


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/775 (32%), Positives = 430/775 (55%), Gaps = 56/775 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A+KK
Sbjct: 7   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQP+  RY L+ GQGNFG++DGD  AA RYTEA
Sbjct: 67  SARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ +L  +D++ VDF+  +++   EP V P++ P LL NG SGIAVGMAT++  H
Sbjct: 127 RLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +ISI++L ++I  PDFPTGGII    + + +++  GRG   +RA
Sbjct: 187 NLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIY-GYDGVKQAFETGRGRVVMRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           +   EEV  G  CI+VTEIPYQV K+ +I K A+LI   ++  + +IRDES  + +RIV 
Sbjct: 246 KANFEEV-HGRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIVY 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++ P++++  ++  + +++ F +N   L  GR P+ + L  +++ ++ HR EV+ 
Sbjct: 305 VLKMDAI-PNVVLNQLYKFTQLQSSFSINNIALVNGR-PEQLNLKDMIRHFVDHRHEVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           RR+ F ++    R  IL+G +       ++D  I IIR  + P   +  +++ F L+E Q
Sbjct: 363 RRTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMTAFDLSEIQ 422

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL LRLR+L  LE  +I++E + ++   E + ++L+    +++ I  E+ E+K  ++
Sbjct: 423 ARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLKNILSDEDLRFSIIKEELEEIKRKYA 482

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VD 539
                  RR+   E+  +      + +I  + + + IS+ G+I+       K  S   V 
Sbjct: 483 DE-----RRS---EIDYSGGDLNIEDLIPDDNVVLTISHLGYIKRTPLTEYKKQSRGGVG 534

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLI 594
             A   ++ D L+  + A     +L  +  GK + L     P G+  S    G AIQ LI
Sbjct: 535 NRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPEGSKTS---KGRAIQNLI 591

Query: 595 DLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFL 642
           ++  + D V A++         Y +   +++V+  G   I++++ + A +R    G   +
Sbjct: 592 NIEPD-DKVKAYILTHDLMDEEYVNNNYVIMVTKNG---IIKKTSLEAYSRPRINGINAI 647

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGI 697
            +  ++ +   +   G   + +  +  K + F  +++  M R     +G+ L   KD  +
Sbjct: 648 TIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPMGRTASGVRGINLGDDKDNEV 707

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +I     E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 708 IGMIVVSDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKTGKLIA 762


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/770 (32%), Positives = 425/770 (55%), Gaps = 75/770 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           ++ YA++ I +RA+PD+RDG KPVHRRI++AM + GL       KSA +VGEV+ K HPH
Sbjct: 17  FINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAAVVGEVMKKYHPH 76

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD  +YD++VRL Q +  RYP++  QGNFG+IDGD AAA RYTEARMT++AE +L  +++
Sbjct: 77  GDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMTKLAEELLADLEK 136

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD +  Y+E  +EP V PS  PNLL NG++GIAVGMAT+IP HN+ EI    +++ID 
Sbjct: 137 ETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLTEIVNGLISIIDK 196

Query: 210 P---------EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           P         ++S+++L+ ++ GPDFPTGG I  SR  I ++Y  G  G +VR +  ++E
Sbjct: 197 PGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI--SRSGIRDAYATGHAGLKVRGKARIDE 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNR 318
              G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES   E VRIV+  K R
Sbjct: 255 -KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVELK-R 312

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P L++  ++  + ++T F + +N+  +   P+V+PL   ++ +L HR +V+ RR+++
Sbjct: 313 GAIPTLVLNQLYKYTQLQTTFTV-INLSIVNGEPKVLPLLDTMRYFLEHRADVVTRRTAY 371

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GLL A  +IDE+IA+IR      + +  +++RF LT+ Q  AIL++R
Sbjct: 372 ELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTRFQLTDVQAQAILDMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +++ E + L+   +++ ++L   K  W +I  E++++++ +        R
Sbjct: 432 LQRLVGLEREKLQGEYNELMTLIDRLKAILGDEKLLWREIKKELKDIRDRYGDE-----R 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKE 547
           R+T  ++   ++   ++ +I  E + + ++  G+++  K              S    +E
Sbjct: 487 RSTITQL---EEDISKEDLIAVEDMVITMTRAGYLKRTKLDAYRAQSRGGRGSSGGKLRE 543

Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQ-LLIDLNHNQ 600
            D         T D +L  +  G     K Y LP     +GR   G  I+ LL  L  N+
Sbjct: 544 EDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLPE----AGRDAKGTHIKNLLPGLRENE 599

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI--IAN-TRKGKTFLKVSSEEKMKLV- 653
            + +      +D     +  + +G   ++++++I    N T  G   L +  ++ +  V 
Sbjct: 600 SVASVLAIKDFDEAGSFVFATKRG---MIKKTQIRDYGNITSAGLIALNLQDDDGLIGVG 656

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEG- 708
           ++  GDH+ +   + + + F  +++ +  R      G+RL   +DG    V+   +  G 
Sbjct: 657 IQRDGDHIVLATSDGQAMRFGANEVRDTGRATQGVIGIRL---RDG--DHVVSMAVVPGD 711

Query: 709 -----LTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPKGFPRSGKFLS 752
                L  I   G       +D   +  K RGG+G +      ++GK ++
Sbjct: 712 DEDSELLAISECGLGKRTPVSD---YPSKGRGGLGVITLDVTEKTGKLVA 758


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/523 (41%), Positives = 322/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D  + A  +R
Sbjct: 255 RATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL++ Q
Sbjct: 373 VVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVSAELAAVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRTT  E S A  A +    +  +P  V++S+ G +
Sbjct: 492 -GTD---RRTTLLESSGAPVAAV-PLQVADDPCRVLLSSTGLL 529


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 321/507 (63%), Gaps = 14/507 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA S I +RA+PD RDG KPV RRI++ MSEMGL       K AR+VGEV+GKLHPH
Sbjct: 32  FLEYAYSVIYQRALPDARDGLKPVQRRILYQMSEMGLRPDRGHVKCARVVGEVMGKLHPH 91

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEARMTQVAELILQGVD 148
           GD ++YD+LVRL+QPF  R PL+ G GNFG++ GD A AA RYTEAR+T+ A L+++ +D
Sbjct: 92  GDSAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDAPAAMRYTEARLTRAAMLMVESID 151

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAVGMAT++  HN+ E+  AA  L+ 
Sbjct: 152 ENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAVGMATNMAPHNLGEVIAAARHLLA 211

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           +P+ ++E+L+E+I GPD PTGG I    + I ++Y  GRG FR+RA   +E++      +
Sbjct: 212 HPDATLEELMEFIPGPDLPTGGTIT-GLDGIRDAYTKGRGTFRIRATVSIEKLTPRRTGL 270

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326
           VVTE+PY V   ++I +I EL+ AK++  + D++D  +  + +R+V+  KN   +P+ ++
Sbjct: 271 VVTELPYNVGPEKVISRIKELVQAKKLQGISDLKDLTDRNQGLRLVIELKN-GFNPEAVL 329

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           E ++ L+ ME  F +N NV  +   P+ + L  +L+ ++ HR EV+ RR   R    + R
Sbjct: 330 EELYRLTPMEETFGIN-NVALVDGEPRTLGLRDLLQVYVDHRLEVVRRRCEHRRAKREER 388

Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + ++ GLL+A  +ID++IA+IR+ D   + +  ++  F L++ Q   IL+  LR L + +
Sbjct: 389 LHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLMDTFDLSDTQARYILDTPLRRLTRYD 448

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + +++ E D L AE  ++ ++L S K+    ++ E+  V + F+       RRT   E +
Sbjct: 449 KQELEQERDTLTAEIAELTAILESDKKLRRLVSKELAAVAKEFATP-----RRTVLREST 503

Query: 504 RADKATLQQAMIEKEPITVVISNRGWI 530
              + +     +  +P  V++S  G I
Sbjct: 504 GEVRTSAMPLEVGDDPCHVLLSTSGLI 530


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/767 (31%), Positives = 415/767 (54%), Gaps = 47/767 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  Y+ Y++S I  RA+PD+RDGFKPV RRI++AM  +G     A+ 
Sbjct: 4   QDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAYM 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEV+GK HPHGD S+Y +L R+AQ +  RYPL+ GQGNFG+IDGDS AA RYTE
Sbjct: 64  KSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RM+ + E ++  +D++ VD ++ ++++  EP V P++ PN L NG +GIAVGMAT++P+
Sbjct: 124 SRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNPEI +E L+E+I  PDFPTG  I+   + +  +Y  G G   +R
Sbjct: 184 HNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIM-GLQGVRSAYETGHGRIILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E  G     IVV EIPY V K+ LI+ IA L+  KRI  + D+ DES  E +RIV
Sbjct: 243 AKTEIEN-GPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++L+  +F ++ +++ F +N   L  GR P+V+ L   ++ ++ HR EV+
Sbjct: 302 IEVK-RDANANVLLNKLFKMTALQSSFAVNCVGLVHGR-PKVLSLKDCIRTFVDHRHEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429
            RR+ + ++    R  IL+GL+IA  NIDE++ +IR    P   + +   RF L + Q  
Sbjct: 360 IRRTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKRFELDDIQAK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+++RL  L  +++ ++  E + L  + +  + +L   +     +  E+ EVKE +   
Sbjct: 420 AIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDELCRQVMKDELNEVKEKYGDV 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541
                RRT   E+  + +    +     + + + IS+ G+I        R+     V   
Sbjct: 480 -----RRT---EIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAEFRAQGRGGVGSR 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A   + +L  +  G+ Y L    L  G     G AIQ ++++  +
Sbjct: 532 GGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKGRAIQNMLNIEAD 591

Query: 600 QDIVTAFVY---------DSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSE 647
            D V AF+Y         + +  ++  +++G   I++++ +   +R    G   + +  E
Sbjct: 592 -DSVNAFLYIKKLNDPEFNKSHYVVFCTAEG---IIKKTCLEEYSRPRTNGVKAITIREE 647

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVIC 702
           +++  VV   G D + +   N + + F+ D +  M R     +G+RL    +     ++C
Sbjct: 648 DRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTMGRVSTGVRGIRLDEDGEDQAVGMVC 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               E  T +  + + + +           RGG G    +   ++GK
Sbjct: 708 INDPEKETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLTDKTGK 754


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/633 (36%), Positives = 353/633 (55%), Gaps = 62/633 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G  S  I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421
           R++F ++    R  IL+G L+A  NIDE+I+I+R+     + K  ++ RF          
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    +S        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPIS---GEVDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
           N G+I   K   VD           +S +  +E D ++    + T D IL ++  G    
Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598

Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            K Y +P G   S +  G  I  L+ L+  + I
Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/773 (32%), Positives = 417/773 (53%), Gaps = 53/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 10  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 70  CSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D D VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 130 RMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       ++NP+ + E+LLE ++    GPDFPT G+IV  R+ I ++YR GRG  
Sbjct: 190 NLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIV-GRQGIEDAYRTGRGSI 248

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   RI  + D+RDE++  + 
Sbjct: 249 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDVRDETSARIG 307

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 308 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGANMLAIVDG-VPRTLRLDQMIRYYVEHQ 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
            +V+ RR+ ++++    R+ +L+GLLIA  ++D++IA+IRN    D  +  +++R+SL+E
Sbjct: 366 VDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQLMTRYSLSE 425

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E   L A+  +++++L S ++Q   I  E++EV + 
Sbjct: 426 IQATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAILASPQRQREIIGEELKEVVDK 485

Query: 486 FSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           F        RRT       E+S  D       +I +E + V ++  G+         RS 
Sbjct: 486 FGDE-----RRTRIVPFEGEMSIED-------LIAQEDVVVTVTRGGYAKRTKTDLYRSQ 533

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
           K     +     +E D ++      T   +L  +  G+ Y   A  L   +    G+ + 
Sbjct: 534 KRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 593

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++    ++ I        Y +   L++ + +G       ++  +N   G   + +  ++
Sbjct: 594 NILAFGQDERIAEVMAIRDYAAAPYLVLATKRGLCKKSALTDFDSNRAGGLVAINLREDD 653

Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDV 700
           ++ +  ++ G  D + +V  N + + F  D  Q+  M R      G+R  +  +    +V
Sbjct: 654 EV-IGARLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRFDADDELLSIEV 712

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I       L    S G +     N+    L  RGG G L  +  P  G  + +
Sbjct: 713 IKPDSTASLLVATSGGFAKRTHLNEY--PLQGRGGKGVLTARIVPSRGNLVGA 763


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/712 (34%), Positives = 390/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVVEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+  + P   K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   + +++
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLD 656

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
             +I +N   GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/590 (34%), Positives = 348/590 (58%), Gaps = 28/590 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+ A  ++D +I II++   P+     +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +I  ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++++
Sbjct: 418 FTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL-------- 533
           K+ +              EV+  +   +  + +I  E   V ++N  +I+ +        
Sbjct: 478 KDKYDDP--------RMSEVNLYEDLDIDNEDLIPVEDTVVTVTNNPYIKRMNLDEYKLQ 529

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAG 578
               V +S +   + D ++      T D  L  +  G     K YTLP+G
Sbjct: 530 NRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSG 579


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIV
Sbjct: 10  INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEAR++++
Sbjct: 70  GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+
Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
            +  +A ID   E+ +  L++YI  PDFPTG  I      + +++  G+G   +R +  +
Sbjct: 190 LDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGKGRIVLRGKAEI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
            E       I+++EIPY V K+ LI+ IA+L+  KRI  + ++ DES  + +RIV+  K 
Sbjct: 249 -ETENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRIVVDVK- 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +  +++  ++ ++ +++ F +N   L  GR P+++ L  ++K ++ HR EV+ RR+ 
Sbjct: 307 RDANSSVVLNKLYKMTALQSSFSVNNIALVNGR-PKLLNLKDLIKAFVDHRHEVVIRRTK 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL+IA  NIDE+IAII++   P      ++ RFSL++ Q  AI+ +
Sbjct: 366 YDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSDIQSRAIVEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +      G 
Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELQEIKDKY------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546
            R T  ++  A +    +     + + + IS+ G+I        R+     V       +
Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A     +L+ +  GK Y L    +  G     G AIQ L+++  + D V 
Sbjct: 538 DEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD-DKVN 596

Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651
           AF+          + ++  LL  + KG   +++++ + A +R    G   + +  ++ + 
Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKIC 706
            V    G++ V +   N + + F  + +  M R   GVR  +  D    +V   +C K  
Sbjct: 654 EVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDSNDEVVGMVCIKDK 713

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E  T +  + + Y +  N     +  RGG G        ++GK ++
Sbjct: 714 EKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 348/620 (56%), Gaps = 70/620 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NP+ SI++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPQASIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    ++V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLECFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMV---------------- 418
            ++    R  +L+GL +A  NID+ I +I+    P    + +M                 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARAE 428

Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                      +++L+E Q   IL +RL+ L  LE+ +I  E  
Sbjct: 429 AENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEYR 488

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A+   +  +L   ++    I  E+  VK      ++ G  R +  E++  +  T  +
Sbjct: 489 EVMAQIADLLDILARPERITTIIGEELTAVK------SEFGDARRSRIELNATELNT--E 540

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D IL
Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600

Query: 565 LLSTDG-----KAYTLPAGN 579
             S  G     K Y +P G+
Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/772 (33%), Positives = 406/772 (52%), Gaps = 70/772 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     + ++YR GRG F++
Sbjct: 196 PHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGVRDAYRTGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VEEV      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 255 RATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL++ Q
Sbjct: 373 VVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  ++++E D L AE E++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKYDRIELETERDRLNAEIEELTRILDSDAELRKLVSGELAAVAKKFG 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS------------ 535
                  RRT   E +    A +    +E  P  V++S+ G +    +            
Sbjct: 493 ND-----RRTLLLESADVPAAPV-PLQVEDAPCRVLLSSTGLLARTANDEPFAQDAAKRV 546

Query: 536 -HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H V +SA+       + +   A    R+ ++        +P  NL  G    E     +
Sbjct: 547 KHDVIVSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAE----FV 602

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            L  ++++V     D        SS G A   E+  +     K       S++E+++++ 
Sbjct: 603 SLEDDEEVVCLTTLDE-------SSPGLALGTEQGVV-----KRVVPDYPSNKEELEVIT 650

Query: 655 KVTGDHVAVVGENR---KLLIFSIDQIPEMSRGKG-VRLQSYKDGGISDVICFKICEG-- 708
              GD +    E R   + L+F  D    +    G VR Q    GG++ V   K+ +G  
Sbjct: 651 LKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQAGQVRPQGRPAGGVAGV---KLAQGAK 707

Query: 709 ---LTWIDSAGRSYNRSENDLLGWLGKRGGV-------GSLVP-KGFPRSGK 749
               T +D A  +       +    G RG +         L P   FPR G+
Sbjct: 708 VIAFTAVDPAADAM------VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGR 753


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/718 (34%), Positives = 391/718 (54%), Gaps = 61/718 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E   D+    +KSARIV
Sbjct: 20  ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD S+Y+++VR+AQ F  R PL+ GQGNFG++DGD AAA RYTE+R+ + 
Sbjct: 80  GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D++ V+F   Y+E   EP V P+++PNLL NG +GIAVGMAT+IP HN  E+
Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  A ++NPEI+ E+L E + GPDFPTG +I+  R  I E+YR GRG   +RAR  V+
Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIM-GRHGIREAYRTGRGSIIMRARAEVQ 258

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
              +    I+V EIPYQV K++L+E+I E++  K +  + DIRDES    +RIV+  K R
Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVK-R 317

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  + ++T FP+NM  ++ GR P  M L  +++ +   R++V+ +R++F
Sbjct: 318 DAAGDVVLNKLYRHTRLQTSFPVNMLAMNAGR-PIQMGLKDVIEAFCEFRKDVVIKRTTF 376

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---------RNE------------------D 411
            +     R  IL GL++A  +IDEII +I         RNE                  D
Sbjct: 377 LLNKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALID 436

Query: 412 KPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            P   +V   ++L+E Q  AIL LRL+ L  +E  ++ +E   L  +      +L S  +
Sbjct: 437 DPGHAVVDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTR 496

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+   +E  S       RRT   +   AD+    + +I++E + V +S+RG+I
Sbjct: 497 VSQVILDELAATRERLSDD-----RRTEITD-QLADQD--DEDLIQQEDMVVTVSHRGYI 548

Query: 531 --------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-- 580
                   R+ +      + +  ++ D +      +T   IL  ++ G  Y L    L  
Sbjct: 549 KRVPLSIYRAQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPE 608

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634
            + +  G+A+  L+ +   + I T               ++  ++ GN      S+    
Sbjct: 609 SAPQSLGKAMVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNI 668

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK---GVR 688
            R GK  +K+   +++  V+     D V +   N K + F+ + +  + RG+   GVR
Sbjct: 669 KRNGKIAMKMQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAV-RVFRGRDSTGVR 725


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/499 (43%), Positives = 306/499 (61%), Gaps = 47/499 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 3   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 63  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+
Sbjct: 123 TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT  II   R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K
Sbjct: 183 IPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 241

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +RLIEKIAEL+  KR+  +  +RDES +D +RIV+  K  ++  ++++ +++  + ++  
Sbjct: 242 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVS 300

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F +NM  L  G+ P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  
Sbjct: 301 FGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 359

Query: 399 NIDEIIAIIRNEDKP---KPVMVSR----------------------------------F 421
           NID II +IR+   P   K  +V+                                   +
Sbjct: 360 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 479

Query: 482 VKEIFSKSTDLGRRRTTFC 500
           V+E F       +RRT   
Sbjct: 480 VREQFGD-----KRRTEIT 493


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/633 (36%), Positives = 353/633 (55%), Gaps = 62/633 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G  S  I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421
           R++F ++    R  IL+G L+A  NIDE+I+I+R+     + K  ++ RF          
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +        RRT    VS        + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVS---GEVDIEDLIPEEECVLTYT 541

Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570
           N G+I   K   VD           +S +  +E D ++    + T D IL ++  G    
Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598

Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            K Y +P G   S +  G  I  L+ L+  + I
Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/733 (35%), Positives = 405/733 (55%), Gaps = 68/733 (9%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +A + +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ P +L NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GR-GSWCIV 269
            ++L++YI  PDFPTGG I+  R  I ++Y  GRG   +R    VE +   GR     I+
Sbjct: 181 EKELMQYIPAPDFPTGGQIL-GRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQ  K+ LIEKIAE++  KRI  + DIRDES      V+    R   P +++ ++
Sbjct: 240 VTELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + +++ F  NM  L +G  PQ++ +   L+ +L  R E + RR+ + ++  + R  +
Sbjct: 300 YKQTPLQSNFGANMLAL-VGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  N+D +IA+IR  +     K  ++ +F L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDNLDAVIAVIRAANDTATAKSQLIEQFGLSEPQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV-SRA 505
           I++E + L      +  +L +  +       EI E + +  K+T    RRT   EV    
Sbjct: 419 IQAEHEELQVRIADLQDILANRSR-----ILEIIETEALQIKTTHDTPRRTAIQEVEGEL 473

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           D   L    I  E   ++++ +G+I+ +  HS           +A   KE D ++  L  
Sbjct: 474 DDIDL----IANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAAARMKEDDGVEHFLTC 529

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607
              D +L  S  G     +AY +PA    S    G  I  ++ + H++ I     V+ F 
Sbjct: 530 CDHDSLLFFSDRGVVYSLRAYQIPAA---SRTARGVPIVQMLPIPHDEKITSVVPVSEFT 586

Query: 608 YDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            D    L++++ KG       +AF    S I AN   G   + +   ++++ V     + 
Sbjct: 587 DD--VYLVMLTRKGYIKKTALDAF----SNIRAN---GLIAISLGEGDQLRWVRLCRAED 637

Query: 661 VAVVGENRKLLIF---SIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWI 712
             ++G ++ + I      DQ+  + R     K ++L+S KD  IS D++  ++ E L  I
Sbjct: 638 SIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRS-KDELISMDILPAQVVERL--I 694

Query: 713 DSAGRSYNRSEND 725
            +A      +E+D
Sbjct: 695 ATANSEEVETEDD 707


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/674 (35%), Positives = 379/674 (56%), Gaps = 38/674 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEK-----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A + +ID+     E+     +L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 VRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R  + ++++  ++  + ++  F + M  L +   P+VM L  +L  +L H+ 
Sbjct: 306 MRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSL-INNEPRVMNLLDMLNYYLEHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  D     K  ++ RF L++ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMERFGLSDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAILADRKLLLGVIKEEIIIIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
                 G  R T       D +   + +I ++ + + ++  G+I+ + + +         
Sbjct: 485 ------GDERRTSIGFDEFDIS--MEDLIPRQDVVITMTKLGYIKRMSNDTFKAQHRGGK 536

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +  +   E D ++     +T   I+  +  G+ Y L A  +   S    G AI  L+ L
Sbjct: 537 GIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEASRTSRGTAIINLLQL 596

Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650
              + I TA +    Y     L + + KG   +V+++ I   AN RK         EE  
Sbjct: 597 MPEEKI-TAVIPIEEYKEGEYLFMSTKKG---LVKKTPITDYANVRKTGLAAITLREEDE 652

Query: 651 KLVVKVTGDHVAVV 664
            + VK T +   ++
Sbjct: 653 LIEVKYTNNERDII 666


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 361/608 (59%), Gaps = 36/608 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + KSARIVG+V+GK
Sbjct: 17  MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEAR+ ++++ IL 
Sbjct: 77  YHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEILS 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  HN+ E  +A  A
Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN  I I++L++YII PDFPTGGII    + + +++  GRG   +RA+   EE+G  +
Sbjct: 197 YIDNKNIEIDELMKYIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKVAFEEIGNRN 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+VTEIPY V K+ +I + +EL+   +I  + +IRDES    +R+V   KN ++ P++
Sbjct: 256 -AIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVYELKNDAI-PNV 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + ++T F +N   L  GR PQ + L  I+  ++ HR E++ RR+ + ++   
Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVKGR-PQQLNLKDIIVHFVEHRHEIVIRRTQYELKKAR 372

Query: 385 RRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438
            R  IL+G +  IA  + +D+ I+IIR+   P+     +++ F L++ Q  AIL+LRL  
Sbjct: 373 ERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQAQAILDLRLAR 432

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +      G  R T
Sbjct: 433 LTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKY------GDERRT 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDS 550
             + S  + +   +  I  E + + IS+ G+I+       K+ S   V   A   ++ D 
Sbjct: 487 EIDYSGGEMSI--EDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGNRAASTRDEDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           L+  + A     +L  +  GK Y L     P G   S    G AIQ LI++  + D + A
Sbjct: 545 LEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEG---SKTAKGRAIQNLINIEPD-DKIKA 600

Query: 606 FVYDSTCK 613
           ++  +  K
Sbjct: 601 YIRTNDLK 608


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 339/592 (57%), Gaps = 26/592 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M ++G      +KK AR+V
Sbjct: 10  INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPYKKCARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RYTE R+ ++
Sbjct: 70  GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLEKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E ++  +D+D VD    ++E   EP V P+K PNLL NG +GIAVGMAT++P+HN+ E+
Sbjct: 130 GEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNLSEV 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +   A IDN EI+ E+L++YI  PDFPTGG I    + + ++Y  GRG   +RA+  +E
Sbjct: 190 IDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIY-GLQGVKDAYETGRGRVVMRAKAEIE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
                   I++TEIPY V K +LIE IA+L+   ++  + +  DES  + +RIV+  K R
Sbjct: 249 S-DENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK-R 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++L+  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR +V  RR+ F
Sbjct: 307 DANANVLLNKLFKMTALQSSFSVNNIALVKGR-PRLLTLKDCIKYFVEHRHDVTIRRTKF 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+G++IA  NIDE++ II+    P   +  +  RF+L E Q  AI+++R
Sbjct: 366 ELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQRFNLDELQSQAIVDMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  +  L+  ++ ++ D L      + S+L         +  E+ E+KE F        R
Sbjct: 426 LSQITGLKVEELHAQFDELQQRIAYLTSILTDDNLCKKVMKDELNELKEKFGDE-----R 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
           RT          A   +     +P+ + +S+ G+I        R      V    +  +E
Sbjct: 481 RTKIIPAEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGSKGVRHRE 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
            D  +    A     +L  +  G+ Y L   N+  G     G AIQ L++++
Sbjct: 538 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNID 589


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/712 (34%), Positives = 390/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421
           R+ + +     R  IL GL IA  NIDEII II+  + P    + +MV ++         
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILPLV 424

Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   +  S+
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653

Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           ++   +    GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ + ++ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N   L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 359/608 (59%), Gaps = 26/608 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +   SL   +   YL YA+S I  RA+PD+RDG KPV RR++  M E+G  +   
Sbjct: 1   MTDQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+ IGK HPHGDQ VY+++VR+ Q F  R PLI GQGNFG++DGD+ AA RY
Sbjct: 61  YKKSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+  +AE++L  ++++ VDFR+ Y+    EPVV P++FPN+L NG  GIAVGM+T+I
Sbjct: 121 TEVRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + L+++P  +++ L++++ GPDFPT G I   R  I ++Y  GRG   
Sbjct: 181 PPHNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFIC-GRTGIRDAYLTGRGSVT 239

Query: 252 VRARWCVEEV-GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +RAR  ++ V G+G      IVVTE+PYQV K+ L+EKIAEL+  K+I  + D+RDES  
Sbjct: 240 LRARAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDR 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  D  +++ ++F  + M+++  + M  +  GR PQV+ L  +L  ++ H
Sbjct: 300 EGMRVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGR-PQVLNLVEMLNYFVEH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           RREV+ RR++F ++  + RV IL+GL  A   ++ II +IR   +  + +  +++RF+L+
Sbjct: 359 RREVVRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTRFALS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q  AIL ++L+ L  LE  ++  E + L+    ++  +L+   +    I  E++EV++
Sbjct: 419 RVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREILDKEAKLREVIVQELQEVRK 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +        RRT   +    D     + +I KE + + I+  G+I        R+ K  
Sbjct: 479 AYGTP-----RRTQIVDCESTDFTI--EDLIPKEEVVITITREGYIKRTPVSAYRTQKRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
            V    +  K  D ++    A T   +L+ +  G+ Y +    +   +  G G+AI  LI
Sbjct: 532 GVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLI 591

Query: 595 DLNHNQDI 602
           +L   + I
Sbjct: 592 ELPEGERI 599


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE ++    GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETSGRTG 339

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+
Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR   + D  +  +     + +
Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+    E+ EI
Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
            +K  D   RRT        D +   + +I +E + V I+  G++        RS     
Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +     +  D ++  L   T   +L  +  G+ Y +    LL +GR   G+ +  L+ 
Sbjct: 571 KGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630

Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622
              ++ I  +   V       LV++++G 
Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 354/626 (56%), Gaps = 33/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   + +PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE++     R
Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 329 LVVVLKRDAV-AKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +     ++    + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621
            ++ I  + A         LV+++KG
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKG 644


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ + ++ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N   L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+S G     E  EI    T K KT  + K+ + ++ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N   L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE ++    GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+
Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR   + D  +  +     + +
Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+    E+ EI
Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
            +K  D   RRT        D +   + +I +E + V I+  G++        RS     
Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +     +  D ++  L   T   +L  +  G+ Y +    LL +GR   G+ +  L+ 
Sbjct: 571 KGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630

Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622
              ++ I  +   V       LV++++G 
Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/667 (35%), Positives = 385/667 (57%), Gaps = 49/667 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+     +KK
Sbjct: 5   EKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  ++++ VD R  +++   EP V P++ PNLL NG +GIAVGMAT++P H
Sbjct: 125 RMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ++N  I+I++L+EYI  PDFPTGG I    + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIY-GYDGVREAFKTGRGRIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +   EEV     CI+VTEIPYQV K+ ++++ A+L+   ++  + D+ DE+ +  +RIV 
Sbjct: 244 KAHFEEVDNRD-CIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIVY 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++ P++++ ++F  + +++ F +N   L  GR P+ + L  ++  ++ HR +V++
Sbjct: 303 VLKKDAI-PNVVLNNLFKHTPLQSSFSVNNIALVNGR-PEQLNLKDLIYHFVEHRHDVVY 360

Query: 374 RRSSFRMQAIDRRVEILKGLL--IAYLN-IDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           RR+ + ++    +  IL+G +  IA  + +D  I IIR+ D P   K  ++  F L+E Q
Sbjct: 361 RRTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKEFELSEIQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+LRL  L  +E  +I+ E + ++A    ++ +L   +++   I  E+ EVK  + 
Sbjct: 421 SQAILDLRLARLTGMELNKIREEYEQIMALIMDLEDILAHKERRTEIIKNELIEVKAKY- 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VD 539
                G  R +  E S  D +   + +I  E + + ISN G+I+       K+ +   V 
Sbjct: 480 -----GDDRRSIIEYSGGDIS--MEDIIPNEQVVITISNAGYIKRTPVNEYKTQARGGVG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRG-HGEAIQLL 593
             A   ++ D ++          +L  +  GK      Y +P G    GR   G AIQ L
Sbjct: 533 QKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPEG----GRNTKGRAIQNL 588

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I+++ ++D V AF+     K        +   +    +I  T+KG   KT L+  S  + 
Sbjct: 589 INID-SEDNVKAFICTQDLK--------DQEYINSHYVIMATKKGIIKKTALEQYSRPRQ 639

Query: 651 KLVVKVT 657
             +V +T
Sbjct: 640 NGIVAIT 646


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/725 (35%), Positives = 406/725 (56%), Gaps = 48/725 (6%)

Query: 4   DNISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           D + + N+ + EN   +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++A
Sbjct: 3   DIVDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYA 62

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+
Sbjct: 63  MYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGS 122

Query: 121 IDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG
Sbjct: 123 VDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNG 182

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+ +   A+I NP    ++L E I GPDFPTGG I+  R+ I
Sbjct: 183 SSGIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQIL-GRDGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            E+++ G+G   +R    +E++   GR     +++TE+P+Q  K+ LIE+IA+L+  KR+
Sbjct: 242 KETFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRL 301

Query: 296 PLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDES  D +RIV+  K R   P +++ ++F ++ ++  F  N+  L  G  P  
Sbjct: 302 DGISDIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKITPLQNNFSANILALVNGE-PTT 359

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NED 411
           + L  +L  +L  R E + RR+SF ++  + R  I+KGLL+A   +D II +IR   + +
Sbjct: 360 LSLRKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTN 419

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  + +   L+  Q DAIL ++LR L  LE  +IKSE D L  +     ++LN  K++
Sbjct: 420 SAREQLQNDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNILND-KER 478

Query: 472 WNQIAC-EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            N+I   E+ ++ E FS       R+T   E+           +I  E   V+++  G++
Sbjct: 479 INEIILEELSKIDERFSSP-----RKT---EILNLGGGLDDIDLIANERSVVLLTTAGYL 530

Query: 531 R--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-L 581
           +        S    S   +    ++ D +K+ +  +  D +LL S  G AY LPA  + +
Sbjct: 531 KRMPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590

Query: 582 SGRGH--GEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           S R      ++QLL      Q   +V+   +D+ C LL+++  G  FI        +  +
Sbjct: 591 SSRTAKGTPSVQLLPIPREEQITSLVSVDSFDNECYLLMLTKAG--FIKRTPLSAFSKVR 648

Query: 638 GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQ 690
               + ++ EE   L    +   GD V ++G +R + I F +D  ++  + R  +GV+  
Sbjct: 649 SNGLIAINLEEGDALTWVRLSTEGDSV-LIGSSRGMTIHFRLDTNELRPLGRTARGVKSM 707

Query: 691 SYKDG 695
           + K+G
Sbjct: 708 NLKEG 712


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/627 (36%), Positives = 360/627 (57%), Gaps = 35/627 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 23  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 83  RVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++PE S ++LL+ +I    GPDFPTG ++V  R  I ++YR GRG   +
Sbjct: 203 REVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGALVV-GRNGIEDAYRTGRGSITM 261

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++     R
Sbjct: 262 RAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 321 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+ ++ +++L S + Q   ++ E+  + + F 
Sbjct: 439 ANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D +   + +I +E I V IS  G++        RS K     
Sbjct: 499 DD-----RRSKLVPFE-GDMSV--EDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621
            ++ I        YD+    LV+++KG
Sbjct: 611 PDEQIAQILAIRDYDA-APYLVLATKG 636


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 347/615 (56%), Gaps = 72/615 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NP+ S+++L+E I  PDFPT GII      + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L +   P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420
            R  +L+GL +A  NID+ IAII+    P P+                 M++R       
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRAETENAA 417

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q   IL +RL+ L  LE+ +I  E  +++A+
Sbjct: 418 AGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  VK       + G  R +  E++  +  T  + +I  
Sbjct: 478 IADLLDILARPERITVMIGEELNAVK------VEFGDARRSKIELNATELNT--EDLITP 529

Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G++        R+ K       A   KE D ++    A+T D IL  S  
Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589

Query: 570 G-----KAYTLPAGN 579
           G     K Y +P G+
Sbjct: 590 GRVYWVKVYEVPQGS 604


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/659 (36%), Positives = 371/659 (56%), Gaps = 64/659 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +++V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G     AF K +
Sbjct: 27  IQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRAFSKCS 86

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D AAA RYTE RM
Sbjct: 87  RVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECRM 146

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+D Y+    EP + PS+FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 147 APIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVGMATNIPPHNL 206

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E     +D+P+ S E++L+ +I    GPDFPTG  I+  R  I ++YR GRG   +
Sbjct: 207 REVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATILGHR-GIEDAYRTGRGSITM 265

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L  KIAEL+   R+  + DIRDE++     R
Sbjct: 266 RAIVNVEEI-QNRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIRDETSGRTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + +D  ++ W+AH+ E
Sbjct: 325 LVIVLKRDAV-AKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSIDAFIRHWVAHQLE 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR++F ++  + ++ I +G L A   +D++IA+IR   + D+ +  ++    + E Q
Sbjct: 383 VIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRARQGLIEMLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AILN++LR L  L+  +I  E D L  E  +   +L    +Q  QI  +  E+ E+ +
Sbjct: 443 ATAILNMQLRRLAALQRQEIIDEHDKLEKEILEYQDILAKESRQ-RQIVSD--ELNELVA 499

Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           K  D   RRTT      EVS  D       +I +E + V I+  G+ +  +S +      
Sbjct: 500 KYGD--ERRTTVLPHAGEVSMED-------LIAEEEMVVTITRGGYAKRTRSDNYRAQKR 550

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAG----------N 579
               +     +E D +       TT   LL  T+       KAY LP G          N
Sbjct: 551 GGKGVRGAQLREDDIVD-HFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVAN 609

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           LL+ +  GE I  ++DL           YD    L++ + +G       SE  +N   G
Sbjct: 610 LLAFQ-PGEKIAQVLDLRD---------YDVADYLVLATRRGTVKKTRLSEYDSNRSGG 658


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/748 (34%), Positives = 386/748 (51%), Gaps = 71/748 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  E VR+V+ 
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   PD+++  ++  +  ++ FP NM  L+ GR P+ M L  I+  ++  R EV+ R
Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417
           RS + +     R  +L G++IA  N+DE++ IIRN   P            PV       
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L 
Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + ++ +  +  E   V+  F+       RRT   ++  A  A   + +IE+E + V +++
Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+        S +  K+ D++       T   +L  S  GK Y L   
Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629

Query: 579 NLLSG----RG----------HGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNA 623
            L  G    RG           GE +  ++ L  ++ +     V  +T K  V  +  +A
Sbjct: 630 RLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDA 689

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP--EM 681
           F    + + +N +    F +  ++  + + +    D V +   N K + F+   +   + 
Sbjct: 690 F----TNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQS 745

Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGL 709
               GVR  + KDG   +VI      G 
Sbjct: 746 RTSTGVRGITLKDG--DEVISLSTLRGF 771


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 334/585 (57%), Gaps = 52/585 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           ++ YA+S I  RA+PD+RDG KP  RRI+ AM E+GL       K A+IVGE +G  HPH
Sbjct: 37  FIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPNRKHLKCAKIVGETMGNFHPH 96

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GDQ++Y +LV +AQP+  R  LI GQGNFG+I+GD  AA RYTEAR++    L++  +D+
Sbjct: 97  GDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAMRYTEARLSAAGALLMADMDK 156

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+E   EP VFP+ FPNL+ NG +GIAVGMAT+IP HN+ E  +  +ALID+
Sbjct: 157 DTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMATNIPPHNLSETIDGLVALIDH 216

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P +S E+LLEYI GPDFPTGG+I+  RE IV  +  GRG  +VR    VEE+  G   IV
Sbjct: 217 PGLSSEELLEYIKGPDFPTGGVIL-GREGIVNYFTTGRGSLKVRGEIHVEELRGGKSAIV 275

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + EIPY V ++ L+EKI EL+  K I  + DIRDES E+ R+V+  K R     ++  ++
Sbjct: 276 IDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDENTRVVIELK-RDAVAKVVANNL 334

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F +NM  +   R P+ + L  +L  +L HR EV+ RR+ F +     R E+
Sbjct: 335 YRHTPLQTTFAVNMVAIDRLR-PKSLNLKELLSCYLDHRHEVVTRRTRFDLNKALERAEV 393

Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------------------FS 422
           L+G LIA   + E I IIR   N D+ +  ++ R                        + 
Sbjct: 394 LEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIESLGIPLDGQRMTEGAMYR 453

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  QV+AIL+LRL  L  LE  +I  E   LL + ++   +L S ++ W  +  E+ E+
Sbjct: 454 LSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFRLILASEEKIWAIVKAELLEI 513

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS--- 537
           KE +      G  R T       + A   + ++  + + + +++ G+I+  SL S+    
Sbjct: 514 KEKY------GNPRKTKIIPDEGEVAF--EDLVANQRVVITLTHNGFIKRTSLDSYRSQR 565

Query: 538 ------VDLSALHF---KEGDSLKIALHAHTTDRILLLSTDGKAY 573
                 + +S       +E D ++   +A T D +L  +TDG+ Y
Sbjct: 566 RGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVY 610


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/750 (32%), Positives = 411/750 (54%), Gaps = 40/750 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK ARIVG
Sbjct: 8   AVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ+A
Sbjct: 68  ETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIA 127

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E ++  +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  HN+ EIC
Sbjct: 128 EDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEIC 187

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A L  +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+      E
Sbjct: 188 DAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVDATE 246

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319
             R    +++  IPY V K+ L++ IA+L   + I  + DI+DES  + +RIV+  ++  
Sbjct: 247 DRR----LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRDDD 302

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P L++  ++  + +E+   + +N++ +G  P++M L  ++  ++ HR +V+ RRS FR
Sbjct: 303 IKP-LVLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 360

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +     R+++L G+L A  +ID ++ I+   ++ D+    + + F L + Q+ AIL +RL
Sbjct: 361 LDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEMRL 420

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L   E+  ++SE+  + AE + ++ ++ S  ++ ++   EI E+++   K  D  R R
Sbjct: 421 QRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQK---KYGDKRRSR 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS----------HSVDLSALHFK 546
             F    R       + +I  E   +++S  G ++ +++            V+ S    K
Sbjct: 478 IKF----RGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTS---MK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             DS+K  +H  + D +   +  G     KAY +P  +  S      A   L       +
Sbjct: 531 TSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTE 590

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           I+ A   +    L++V+  G+        +  +   G   + +  ++++  V    GD +
Sbjct: 591 IMKA-PPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKN 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + V+    K  +F+  +I E  R   GVR     +G  + +  F +      +  + + Y
Sbjct: 650 MFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGD-TILTAFVVNSDEDILSISEKGY 708

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            +  N     +  RG  G +V +   R+G+
Sbjct: 709 GKRTNISEFPIHHRGSSGVMVYRDTERTGR 738



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 14/219 (6%)

Query: 484 EIFSKS-TDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRS------LKS 535
           EI  KS T LG     F ++++ ++ T + +A  EK    ++++  G ++         S
Sbjct: 563 EIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDS 622

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            S  L  +  ++ D L    +      + +LS+ GKA       +         ++ +  
Sbjct: 623 KSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRSM-R 681

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           LN    I+TAFV +S   +L +S KG       SE   + R     +     E+   V  
Sbjct: 682 LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSH 741

Query: 656 VTG----DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                  D V +V  N K +     +IPE SR   GV+L
Sbjct: 742 AIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKL 780


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 354/626 (56%), Gaps = 33/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   + +PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE++     R
Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 329 LVVVLKRDAV-AKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +     ++    + E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621
            ++ I  + A         LV+++KG
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKG 644


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 254/747 (34%), Positives = 405/747 (54%), Gaps = 53/747 (7%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+ +++  +++ +D D V F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  + EP       PNLL NGT GIAVGMATSIP HN++E+  A  A IDN +I+I
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 215 EKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++L+ +I+GPDFPTG ++    + + E Y+ GRG   +RA+   EE  +     VVTEI
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAKIDFEE-NKKHDRFVVTEI 238

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFML 332
           PYQ  K+++IEKIAEL+  K I  + DIRDES  E +RI++  K +  +PD+++  ++  
Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELK-KDANPDVVLSKLYKY 297

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + +++ F +   +     +P ++ L  I+K ++  +  V+ +RS F    + +R  IL+ 
Sbjct: 298 TALQSSFSI-NLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEA 356

Query: 393 LLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           L IA  N+D++I II+N    ++ K  + ++++  E Q  AIL++RL+ L  LE  +I  
Sbjct: 357 LHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITL 416

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E+ N+      +D L+N+ ++Q N +  ++ E+ + F  +     RRT   +    +   
Sbjct: 417 EMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDN-----RRTELIDEELIN--I 469

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKIALHAHTTDR 562
             + +I      +++S  G+IR +      +        +++ +  D + IA      D 
Sbjct: 470 EDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDW 529

Query: 563 ILLLSTDGKAYT---------------LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           +L  +  GK Y                LP  N L+     + I  ++ L +N++    F 
Sbjct: 530 VLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKE---KFN 586

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           Y     L  V+ KG     + SE     R GK  + +   +++  V   TG D + +  E
Sbjct: 587 Y-----LTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANE 641

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           + K++      +   SR G GVR    +  D  +  +  FK+   +T + + G       
Sbjct: 642 SGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKLTH-ITTVSNKGLFKKTPI 700

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +D    +  R G G  V     R+GKF
Sbjct: 701 DDY--RISGRNGKGIKVMNLNQRTGKF 725


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE ++    GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE++    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+
Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR   + D  +  +     + +
Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+    E+ EI
Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
            +K  D   RRT        D +   + +I +E + V I+  G++        RS     
Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +     +  D ++  L   T   +L  +  G+ Y +    LL +GR   G+ +  L+ 
Sbjct: 571 KGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630

Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622
              ++ I  +   V       LV++++G 
Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 404/708 (57%), Gaps = 55/708 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K AR V
Sbjct: 11  VDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCARAV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+R+ Q 
Sbjct: 71  GDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRLNQF 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  HN+ E 
Sbjct: 131 AQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNLTET 190

Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             A +A ID   EI++++L++Y+  PDFPTGG+I    E + E++R GRG   +R +  +
Sbjct: 191 LNACIAYIDARGEITVDELMQYVKAPDFPTGGVIY-GYEGVKEAFRTGRGRIVIRGKADI 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
           EE       I++ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+ + +RIV+  K 
Sbjct: 250 EEY-HSHERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDIK- 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  +  +++  ++  SD+E+ F +N   L  GR P+ + L  ++  ++ HR +V+ RR+ 
Sbjct: 308 KDANAGVVLNYLYKYSDLESYFSVNNIALVNGR-PRQLNLKDLIGHFVDHRHDVVTRRAQ 366

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434
           + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M   +  F+L+E Q  AI+++
Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARAIVDM 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFSKSTD 491
           RLR L KL+  +++ E + L   KE+ID L   L+    +   I  E RE+ E +     
Sbjct: 427 RLRQLTKLDIDKLQHEYNEL---KERIDYLNLFLSDINMRMELIQEECREIIEKYGDE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              RR+   E+  A +    +     E + + IS+ G+I        R+     V +   
Sbjct: 482 ---RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGA 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598
             ++ D ++    A     ++L +  G+ Y L     P G   S    G  IQ L+DL+ 
Sbjct: 536 DSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEG---SKSSKGRHIQNLLDLDE 592

Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEI-------IANTRK-GKTFLKVSSEE 648
            ++ +TAF  + + T     V++    F  E+  I        AN RK G   + +  ++
Sbjct: 593 -ENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRDDD 651

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691
           ++  V    G+  + +   N + + F+  ++  M R     +G+RL +
Sbjct: 652 QVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDN 699


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL +A  NIDE IAII+    P   K  +++R               
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L++ Q   IL +RL+ L  LE+ +I  E   +
Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A+   +  +L     +  +I   I  V+E+ +   + G  R +  E +  +  T  + +
Sbjct: 489 MAQIADLLDIL----ARPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL  
Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
           S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SKG
Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679
                  +E  +N RK         E    +   +T G H V +  +  K + F  + + 
Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVR 688
            M R  +GVR
Sbjct: 720 PMGRQARGVR 729


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 386/710 (54%), Gaps = 41/710 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 4   QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 64  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +LQ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+    +ALI NPEIS  +L+ +I GPDFPTGG ++ S   I ++Y  G+G   +
Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGS-AGIRDAYLTGKGSITM 242

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    ++ +   GR     I++TE+PYQ  K+ LIE+IAE++  KR+  + DIRDES  D
Sbjct: 243 RGVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRD 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ +++  + +++ F  NM  L  G  P ++ L   L+ +L  R
Sbjct: 303 GMRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGE-PVLLTLKRSLEVFLDFR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDKP--KPVMVSRFSLTE 425
            E + RR+ + ++  + R  +L+GLLIA  N+D II +I R+ D P  K  ++  + L+E
Sbjct: 362 IETIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLSE 421

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E  +L    E    +L   ++    I  E+ ++++ 
Sbjct: 422 VQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQR 481

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540
           F +      RRTT  E   AD       +I  E   ++++ +G+I+ +  +         
Sbjct: 482 FQEP-----RRTTLLE---ADGELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRGT 533

Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
              +    K+ DS++  L     D IL  S  G  Y LPA  +   S    G  I  L+ 
Sbjct: 534 RGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLP 593

Query: 596 LNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEK 649
           +   + I     V+AF  D   + LV+ ++G           AN R  G   + +S  ++
Sbjct: 594 IPREERITSIVPVSAFSDD---EYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQ 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
           ++ V     +   ++G  + + I    S D +  + R  +GVR  S + G
Sbjct: 651 LRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSG 700


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 272/811 (33%), Positives = 421/811 (51%), Gaps = 95/811 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L ++ +P+ ++++++E I  PDFPT GII      + E YR GRG   +RAR   E
Sbjct: 191 VDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLTRTR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L+E Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 429 ADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A  E +  +L   ++    I  E+  +K  F +   LG RR T  E S  D +T  + 
Sbjct: 489 IMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHK-LGMRR-TLVEHSAQDLST--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608
            S  G+ Y L     PAG+  S RG           GE I +++ L  +     A  FV+
Sbjct: 605 FSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVF 663

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665
            +T    V  +  + F        +N RKG   + V+ ++   L+      G H V +  
Sbjct: 664 MATSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGQHDVMLFS 714

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNRS 722
           +  K + F  + +  + R  +GVR    +DG    VI   + E  T   + +    Y + 
Sbjct: 715 DGGKGVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGKR 772

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +      RG  G +  +   R+GK +++
Sbjct: 773 TSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/703 (34%), Positives = 398/703 (56%), Gaps = 44/703 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           + SL   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+
Sbjct: 15  STSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCARV 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL+SG GNFG+ID D  AA RYTE R++ 
Sbjct: 75  VGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRLSS 134

Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +A E IL  + E+ +DF + ++    EP+V P K PNLL NG +GIAVGMAT+IP HN+ 
Sbjct: 135 IANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPHNLG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +AL++ PE+S EKL + I GPDFPTGG I+++ E I ++YR G+G  RVR    
Sbjct: 195 ELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQT-EGIKDAYRDGKGIIRVRGVVS 253

Query: 258 VEEVGRGS------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +E++  G         +++TE+PYQV K+  IEKIA+L+   R+  + DIRDES      
Sbjct: 254 IEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRTGMR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R     L+++ ++  + +E  F   M  L +   PQ + L  +L+E+L+ R + 
Sbjct: 314 VVIELKRDAVTKLVLKELYKKTALEHNFGAIMLAL-VDNQPQQLSLRSLLEEFLSFREKT 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           L R+ S  ++    + +ILKGLLIA  N+D++I I+ N       K        L E Q 
Sbjct: 373 LNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKELGLNEKQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL + +R L  LE  +I++E + L  +  K++ LL + K+   ++  E+R +K+   K
Sbjct: 433 NGILAMPMRRLTGLERKKIETEYEELQIKVNKLEILLKNRKEFLAELKKELRSLKK---K 489

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE- 547
             D  R R    + ++ +    Q+  + K+PI  + S +    + K  +++LS     E 
Sbjct: 490 YGDKRRTRIIGKDTTKINNIETQKLDVPKQPI--LQSKKKISHTPKQLNLNLSKDSILEM 547

Query: 548 --------------GDSLKIALHAHTT---DRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                         G   K+ +++      ++I++++ +GKAY +   ++         +
Sbjct: 548 TYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVITDNGKAYPIKILDIPYIDVQSTFL 607

Query: 591 QLLIDLNHNQD---IVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             L+  N  +D   +++ F      +   LL+++++G    ++ SE+ + T +G + +K+
Sbjct: 608 ISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTNQGKIKRIQLSELNSLTNRGLSLMKL 667

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG 684
            +++ +K +  V   D + +   + +LL F +  ++IP M+R 
Sbjct: 668 KNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNEEIPVMNRN 710


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 356/639 (55%), Gaps = 70/639 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSAR+
Sbjct: 15  AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARV 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAAAMRYTEIRMAK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ GIAVGMATSIP HN+++
Sbjct: 135 IAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGMATSIPPHNLRD 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
                L L+  PE  I  L++ I  PDFPTG  I      I   Y+ GRG   +R++  +
Sbjct: 195 TLSGCLKLLREPETDINDLIDIIKAPDFPTGATIY-GLTGIRAGYQTGRGRVVIRSKTHI 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +G+ S  I+V EIPYQV KS+L+EKI EL+  K +  + ++RDES +D   ++    R
Sbjct: 254 EPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESDKDGTRIVIELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           + + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ +
Sbjct: 314 NENAEVILNQLYKLTQLQDSFSINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTLY 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR--------------- 420
           R++       I +G  +A  NIDE+IA+I+     D  +  ++SR               
Sbjct: 373 RLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQSDLVSEMLNRSD 432

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L++ Q  AIL + LR+L  L++ +I  E   L+A   
Sbjct: 433 LDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQDEIIKEYKELMA--- 489

Query: 460 KIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIE 516
            I  LL+  +  ++  QI  +     E+ +  T  G  RR+        D A   + +I 
Sbjct: 490 IIVDLLDILAKPERVRQIIDD-----ELVAMQTQFGDERRSEINTFGGGDIA--DEDLIP 542

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
              + V +++ G+I++  +              A   K+ D ++    A+T D ++  + 
Sbjct: 543 PREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 602

Query: 569 DG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
            G     K Y LP G   S    G  I  +I L  N+ +
Sbjct: 603 LGRCHWIKVYRLPEGGRQS---RGRPINNVIQLEENEKV 638


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/657 (35%), Positives = 369/657 (56%), Gaps = 65/657 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARIV
Sbjct: 11  ISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NP  +IE+L+E +  PDFPT GII  +   + ++YR GRG   +RAR   E
Sbjct: 191 LDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGT-SGVRDAYRTGRGRVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    R
Sbjct: 250 DLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L+HRRE++ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  N+D +I +I+    P PV                 M+SR 
Sbjct: 369 DLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSRV 427

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q   IL +RL+ L  LE+ +I SE  +++ + 
Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVMEQI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++  F      G  R +  EV+  D     + +I  +
Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEF------GDARRSHIEVNAYDIDV--EDLITPQ 539

Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+++S  L  +           A   KE D ++    A+T D +L  S  G
Sbjct: 540 DLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRG 599

Query: 571 KAYTLPA-GNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGN 622
           + Y +    + + GRG  G+ +  L  L   + I T      +D    + + +++G 
Sbjct: 600 RVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGT 656


>gi|332638147|ref|ZP_08417010.1| DNA gyrase subunit A [Weissella cibaria KACC 11862]
          Length = 865

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 353/606 (58%), Gaps = 36/606 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSA
Sbjct: 11  IKPAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKQHKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 71  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSIDGDPAAAMRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D +DF D Y+  D EPVV P++FPNLL NG +GIAVGMAT+IP HN+
Sbjct: 131 SKIATEMLRDINKDTIDFADNYDGTDREPVVLPARFPNLLVNGANGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   L++NP+++  +L+E + GPDFPTG I++  +  I ++Y  G+G   VRA+ 
Sbjct: 191 GEVISAIHMLMNNPDVTTAELMEAVPGPDFPTGAIVM-GKSGIRKAYETGKGVVTVRAKV 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  + DES +    +    
Sbjct: 250 EIETEKSGKERIIVTELPYMVNKAKLIERIAELGREKRIEGITAVNDESDQTGYRIAIDI 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +   +++ +++  + M+T F  NM  +  GR P+++ L  +L  +L H++ V+ RR+
Sbjct: 310 RRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGR-PKLLGLKAMLVAYLEHQQIVVRRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +ID II+IIR  +     K  +++ ++L++ Q  AIL+
Sbjct: 369 EFELRKAEARAHILEGLRIALDHIDAIISIIRGSETSEIAKNRLMTDYALSDKQAQAILD 428

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +I+ E   L+        +L   ++    I  E+ E++E +      G
Sbjct: 429 MRLVRLTGLERGKIEDEYQGLMTAIADYKDILAKPERIDEIIYTELLEIQEKY------G 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545
             R T  ++     +   + +IE+E I V +++ G+I+ +              +  +  
Sbjct: 483 DERRTELQIGDV-TSIEDEDLIEEEDIIVSLTSAGYIKRMAQTEFRAQNRGGRGVQGMGV 541

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590
            + D +   +   T D +L  +  GK Y +               P  NLL G   GE++
Sbjct: 542 NDDDFIDQLIGTSTHDTLLFFTNAGKVYKMKGYEIPEYGRSAKGIPVVNLL-GIEAGESV 600

Query: 591 QLLIDL 596
           Q +I++
Sbjct: 601 QTVINV 606


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 91/713 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  GA +K
Sbjct: 44  DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 103

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGDSAAA RYTE
Sbjct: 104 KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTE 163

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIAVGMAT IP 
Sbjct: 164 ARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPP 223

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A ID+P+I I+ L++++  PDFPTGGII      + E+Y  GRG   +R
Sbjct: 224 HNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIY-GYAGVYEAYHTGRGRVVMR 282

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+   EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDES  D +RIV
Sbjct: 283 AKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIV 342

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K +  + +++   ++  S ++  F +NM  L  GR PQV+ L   ++ ++ HR E++
Sbjct: 343 IELK-QGANAEIVKNQVYKHSRLQDTFGVNMVALVGGR-PQVVTLKDAIRHYVDHRHEIV 400

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------ED 411
            RR+ + +     R  IL+GL +A  ++D +IAIIR+                     +D
Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460

Query: 412 KPKPVMV-----SRFSLTENQVDAILNLRLRSLRK-------LEEYQIKS---------- 449
             + + V           ++ V A+L      L +       L E Q  +          
Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520

Query: 450 --ELDNLLAEKEKI-------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             E + ++ E E I         +LNS  ++   I  E+  VKE F         R T  
Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE------RRTEI 574

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552
           + +  D   ++  +IE++ + V I+N+G          R+     V +     +E D ++
Sbjct: 575 DYTGGDDIIIED-LIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIE 633

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                H+ D +LL +  G+ + L    +  G     G +I+ LID++           D 
Sbjct: 634 HLYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDP----------DD 683

Query: 611 TCKLLVVSSKGN----AFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV 656
             + ++  SK N    AF+     ++A TR+G   KT L+  S  +   ++ +
Sbjct: 684 RVRAVISVSKENFEDEAFL-NSHYVLAATRQGQVKKTALEAYSRPRSNGIIGI 735


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 317/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 15  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGDQS+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 135 ECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  PE  +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYANGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  + +  +R
Sbjct: 254 RATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  M L  +L+ +L HR E
Sbjct: 314 LVIEIKN-GFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTMGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  ++ RFSL+E Q
Sbjct: 372 VVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMERFSLSEVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E +++  +L S       ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLTGEIDELTGILESDSALRKLVSAELAAVAKKFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E +    A +    +  +P  V++S+ G +
Sbjct: 492 TE-----RRTVLLESAGTSVAAVPLE-VADDPCRVLLSSTGLL 528


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL +A  NIDE IAII+    P   K  +++R               
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L++ Q   IL +RL+ L  LE+ +I  E   +
Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A+   +  +L     +  +I   I  V+E+ +   + G  R +  E +  +  T  + +
Sbjct: 489 MAQIADLLDIL----AKPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL  
Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
           S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SKG
Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679
                  +E  +N RK         E    +   +T G H V +  +  K + F  + + 
Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVR 688
            M R  +GVR
Sbjct: 720 PMGRQARGVR 729


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARIV
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L L+ NPE ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  IL+GL +A  NIDE IAII+    P   K  +++R               
Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L++ Q   IL +RL+ L  LE+ +I  E   +
Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A+   +  +L     +  +I   I  V+E+ +   + G  R +  E +  +  T  + +
Sbjct: 489 MAQIADLLDIL----ARPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  + + V +S+ G++        R+ K       A   KE D +     A+T D IL  
Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
           S  G+ Y L    +  G     G  I  +  L+  +    I+    +D    + + +SKG
Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679
                  +E  +N RK         E    +   +T G H V +  +  K + F  + + 
Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVR 688
            M R  +GVR
Sbjct: 720 PMGRQARGVR 729


>gi|333025713|ref|ZP_08453777.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
 gi|332745565|gb|EGJ76006.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
          Length = 846

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/626 (36%), Positives = 353/626 (56%), Gaps = 33/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 3   VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 63  RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 123 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   + +PE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 183 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE++     R
Sbjct: 242 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 301 LVVVLK-RDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +     ++    + E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 419 ANAILEMQLRRLAALERQKLIQEHDELQRRIDEYKAILASPERQRQIVNDELGQIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V IS  G++        RS K     
Sbjct: 479 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L  +GR   G+ +  L+   
Sbjct: 531 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621
            ++ I  + A         LV+++KG
Sbjct: 591 PDESIAQILAIKDYEAAPYLVLATKG 616


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 348/618 (56%), Gaps = 60/618 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  P+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +    ++    R
Sbjct: 250 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++K +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIKVFLQHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 428

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L++ Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 429 ADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++  E +  +L    +    I  E+  +++ F +S  +G RR+T  E S  D +T  + 
Sbjct: 489 VMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSK-VGARRSTI-EHSAQDLST--ED 544

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILC 604

Query: 566 LSTDGKAYTLPAGNLLSG 583
            S  G+ Y L    + SG
Sbjct: 605 FSNRGRLYWLKVWEVPSG 622


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/523 (40%), Positives = 319/523 (60%), Gaps = 16/523 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 15  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRRDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DE+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     + ++Y  GRG F++
Sbjct: 195 PHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIV-GLGGVRDAYATGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  +    +R
Sbjct: 254 RATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLTDREHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 314 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I IIR   N  + +  ++ RFSL++ Q
Sbjct: 372 VVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMERFSLSDIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L AE E++  +L+S  +    ++ E+  V + + 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLTAEIEELSRILDSDAELRKLVSSELAAVSKKY- 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E S A  A   Q  +E  P  V++S+ G +
Sbjct: 491 -GTD---RRTVLLESSGAAAAVPLQ--VEDTPCRVLLSSTGLL 527


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/783 (32%), Positives = 406/783 (51%), Gaps = 58/783 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY LI GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  + L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   +E        IV+TEIPY V K +L+  IA+L    R+  + ++ DES
Sbjct: 240 GRGRIVVRATAEIES-SENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++L+  +F L+ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVLLNKLFKLTALQSSFSVNCIALVNGR-PRLLSLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E + L+   + ++ +LN  +     +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPELCKKVMKDELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           VKE +  +     RRT    +   D     +     +P+ + +S+ G+I        R  
Sbjct: 477 VKEKYGDA-----RRTM---IKPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSEFREQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
               V       ++ D  +    A     +L  +  G+ Y L    +  G     G AIQ
Sbjct: 529 ARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            L+++  + D V AF        L +    +A  +    ++  T+ G   KT L+  S  
Sbjct: 589 NLLNI-ESDDQVNAF--------LRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRP 639

Query: 649 KMKLVVK---VTGDHVA------------VVGENRKLLIFSIDQIPEMSRG----KGVRL 689
           +   V+    V GD V             +   N + + F  ++I  M R     +G+RL
Sbjct: 640 RANGVIAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTMGRTSTGVRGMRL 699

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               D  +  +I     E  T +  + + Y +  + L   + KRGG G        ++G+
Sbjct: 700 DE-GDDAVVGMIVVNDPEKETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGR 758

Query: 750 FLS 752
            ++
Sbjct: 759 LVA 761


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+ +  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  E +R+
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K ++ +   ++  +F  +D++  +  NM  ++  R P+ + L  IL+ +L H+REV
Sbjct: 302 VVELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545
               G  R T  +   +      + M+ +E + +++S+ G+++  SL+S ++ D      
Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            AFV+   D   K L+ + +G    V+    +A+ + G+T+ K  +   +KL  K   D 
Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYVKL--KTDADE 646

Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706
           V  V   E+ K  +F           S+D++P   +   GV+    +D  +++VI     
Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706

Query: 707 EGLTWIDSAGRSYNR 721
           + ++ +   G SY +
Sbjct: 707 DEVSILTQRG-SYKK 720


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 343/609 (56%), Gaps = 59/609 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM EM   +   F K AR+V
Sbjct: 11  ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVKCARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S+YD+LVR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE R+ ++
Sbjct: 71  GEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTECRLDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPHNITEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
              AL L+ N + +I++L+E +  PDFPTGGII      + + YR GRG   +RA+   E
Sbjct: 191 INGALHLLANEQCTIDELIELVPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E GR G   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    R
Sbjct: 250 EYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQLLECFLSHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  +L+GL +A  NID+ IAIIR    P   K  ++SR               
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLARAG 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L++ Q   IL +RL+ L  LE+ +I +E  ++
Sbjct: 429 EANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEYKDV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A+   +  +L    +    I  E+   K  F       RR T   E +  D AT  + +
Sbjct: 489 MAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRST--IEHNATDLAT--EDL 544

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  + + V +S+ G++        R+ K       A+  K+ D +     A+T D IL  
Sbjct: 545 ITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCF 604

Query: 567 STDGKAYTL 575
           S  G+ Y L
Sbjct: 605 SNRGRLYWL 613


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/690 (34%), Positives = 373/690 (54%), Gaps = 45/690 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN++E+ +   A IDNP+I +E+L++YI  PDFPTGG I    + + ++Y  
Sbjct: 181 GMATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA L+   ++  + +  DES
Sbjct: 240 GRGRIILRAKAEIES-DESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNNIALVNGR-PRLLSLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           + HR +V  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P     +   RF
Sbjct: 357 VEHRHDVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E D L      ++++L+  +     +  E+ E
Sbjct: 417 DLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPELCKKVMKDELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           VKE +        RRT          A   +     +P+ + +S+ G+I        R  
Sbjct: 477 VKEKYGDD-----RRTKIIPDEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSDFREQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591
               V       +  D  +    A     +L  +  G+ Y L   N+  G     G AIQ
Sbjct: 529 ARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            L+++  +         D+   +L +    +   +    ++  T+ G   KT L+  S  
Sbjct: 589 NLLNIESD---------DAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRP 639

Query: 649 KMKLVVKVT---GDHVAVV----GENRKLL 671
           +   V+ +    GD V  V    GEN  ++
Sbjct: 640 RTNGVIAINIAEGDEVVDVRLTNGENELIM 669


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 361/608 (59%), Gaps = 36/608 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + KSARIVG+V+GK
Sbjct: 17  MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEAR+ ++++ IL 
Sbjct: 77  YHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEILS 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  HN+ E  +A  A
Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN  I I++L++YII PDFPTGGII    + + +++  GRG   +RA+   EE+G  +
Sbjct: 197 YIDNKNIEIDELMKYIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKVAFEEIGNRN 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+VTEIPY V K+ +I + +EL+   +I  + +IRDES    +R+V   KN ++ P++
Sbjct: 256 -AIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVYELKNDAI-PNV 313

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + ++T F +N   L  GR PQ + L  I+  ++ HR E++ RR+ + ++   
Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVKGR-PQQLNLKDIIVHFVEHRHEIVIRRTQYELKKAR 372

Query: 385 RRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438
            R  IL+G +  IA  + +D+ I+IIR+   P+     +++ F L++ Q  AIL+LRL  
Sbjct: 373 ERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQAQAILDLRLAR 432

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +      G  R T
Sbjct: 433 LTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKY------GDERRT 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDS 550
             + S  + +   +  I  E + + IS+ G+I+       K+ S   V   A   ++ D 
Sbjct: 487 EIDYSGGEMSI--EDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGNRAASTRDEDF 544

Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           L+  + A     +L  +  GK Y L     P G   S    G AIQ LI++  + D + A
Sbjct: 545 LEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEG---SKTAKGRAIQNLINIEPD-DKIKA 600

Query: 606 FVYDSTCK 613
           ++  +  K
Sbjct: 601 YIRTNDLK 608


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/628 (37%), Positives = 351/628 (55%), Gaps = 50/628 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409
           R+ + +     +  IL GL IA  NIDEII II+                          
Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLV 424

Query: 410 ---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              +DK       + S TE Q  AIL +RL+ L  +E+ +++ EL NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVT 604
            L LS  +G G  +  ++ L  N+ I  
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITN 624


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/748 (34%), Positives = 385/748 (51%), Gaps = 71/748 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  E VR+V+ 
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   PD+++  ++  +  ++ FP NM  L+ GR P+ M L  I+  ++  R EV+ R
Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417
           RS + +     R  +L G++IA  N+DE++ IIRN   P            PV       
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L 
Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + ++ +  +  E   V+  F+       RRT   ++  A  A   + +IE+E + V +++
Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+        S +  K+ D++       T   +L  S  GK Y L   
Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629

Query: 579 NLLSG----RG----------HGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNA 623
            L  G    RG           GE +  ++ L  ++ +     V  +T K  V  +  +A
Sbjct: 630 RLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDA 689

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP--EM 681
           F    + + +N +    F +   +  + + +    D V +   N K + F+   +   + 
Sbjct: 690 F----TNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQS 745

Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGL 709
               GVR  + KDG   +VI      G 
Sbjct: 746 RTSTGVRGITLKDG--DEVISLSTLRGF 771


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 346/621 (55%), Gaps = 72/621 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+R G KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A   L+ NPE ++++L+E I  PDFPT GII      + + YR GRG   +RA    E
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ +
Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I II+    P P+                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +  T  
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G++        R+ K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDG-----KAYTLPAGN 579
           L  S  G     K Y +P G+
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/727 (33%), Positives = 390/727 (53%), Gaps = 62/727 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+   V A  L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 7   LLSGQVIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA RY
Sbjct: 67  YRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRY 126

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +  E +L  V E  VDF   ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 127 TETRLASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ E+ +  +ALIDN ++S E+L   I  PDFPTGG IV S + I E+Y  GRG  
Sbjct: 187 VPPHNLGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIV-STDGIAEAYTQGRGSI 245

Query: 251 RVRARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +E+V      R    IVVTE+P+QV K+  IEK A L+ A R+  + DIRDES
Sbjct: 246 VMRGVAKIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDES 305

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D +R+V+  K R   P +++  ++  +D+ ++F      L +   P+ + L  IL+E+
Sbjct: 306 DRDGIRVVIELK-REASPQVVLHHLYQQTDLMSKFGAIFLAL-VDSQPRQLTLKQILQEF 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L  R + L R+ +  ++A  RR  I++GLL A  N+D +I I+RN       K  + S  
Sbjct: 364 LNFREQTLIRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAKISLESDL 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            ++E Q DAIL + +R L  LE  +++ E + L  +  ++  L++   +    +  E+R 
Sbjct: 424 QMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRRLIDDRSELMKSLKKELRS 483

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRAD--------------------KATLQQAMIEKEPIT 521
           +K  +       RR     +  +A                      A LQ     +E   
Sbjct: 484 LKRQYGDP----RRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTTAILQPVAPAEEETF 539

Query: 522 VVISNRGWIRSLKSHS--------VDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKA 572
           +  ++RG++R L + +         D S +  ++ D   +  +  +T   + +++  GKA
Sbjct: 540 LEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTNTGQNLAIITRTGKA 599

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQD--------IVTAFV---YDSTCKLLVVSS 619
           Y L  G++   S R  G  +  L+  +  +D        I+  F+   +     L++V+ 
Sbjct: 600 YPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFIVAQHSDKTDLILVTQ 659

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID-- 676
           +G    +  +E++  T +G T +K+  ++++    +   G+ + +     ++L   ++  
Sbjct: 660 QGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQMILATSGGRVLRLPVNDE 719

Query: 677 QIPEMSR 683
           Q+P M R
Sbjct: 720 QLPPMGR 726


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/706 (34%), Positives = 382/706 (54%), Gaps = 76/706 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RAIPD+RDG KPV R+I+  M E+GL    ++KKSARIVGEV+GK HPH
Sbjct: 18  YMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSARIVGEVMGKFHPH 77

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++YD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYTEARM ++AE +L  +D+
Sbjct: 78  GDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEARMQRLAEELLADIDK 137

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V     ++    EP V P+K PNLL NG SGIAVGM T+IP HN+ E+ EA  ALIDN
Sbjct: 138 NTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPHNLSELVEALTALIDN 197

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+ +IE+L+EY+ GPDFPTGGII+  R+ I + Y  GRG   VR    +EE  +G   IV
Sbjct: 198 PDATIEELMEYVKGPDFPTGGIIM-GRDGIKKMYETGRGRMVVRGVAEIEE-AKGGTRIV 255

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           ++EIPY V K+ LI++IA +    R   + ++RDES +    V+    R  DP++++  +
Sbjct: 256 ISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIELKRGADPNVVLNLL 315

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  +M V+   + P++M L  I + ++ HR EV+ RR+ + ++   ++  I
Sbjct: 316 YKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRRTEYELEQASKKAHI 375

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL  A   ID ++ IIRN    +   V+      +T  Q  AIL +RL  L  LE  +
Sbjct: 376 LEGLTKASRAIDTVVDIIRNSKNIQEASVNLQETLEITPEQSQAILEMRLGKLTALEIDK 435

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           + +E   L+ + ++   +L+  K  +  I  E++E++  +  +     RRT        D
Sbjct: 436 LVTEYAELVEKIKEYREILSDDKNIYQIIKKELQELEAQYGDA-----RRTKISIDGNTD 490

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                + +I  + + V ++ +G+I++           + K+G   K      TTD     
Sbjct: 491 FNV--EDVIPDDEVVVTVTKKGYIKATPLED------YRKQGRGGKGIRGVKTTD----- 537

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFI 625
                                             D VT  V  +   K +V++SKG A+ 
Sbjct: 538 ---------------------------------ADFVTNVVSTTRLSKTVVITSKGKAYF 564

Query: 626 VEESEIIANTR--KGK---TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           +   E+   +R  +GK    ++K+  +E ++ V+ V  + VA    N+ L+I +      
Sbjct: 565 INNYELECTSRSSRGKLLANYVKIEPDETVQAVLSVKREEVA----NKHLIITT------ 614

Query: 681 MSRGKGVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
             +GK  R   +++ +   S +    + EG + +D AG S +  E 
Sbjct: 615 -RKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVD-AGISTSEEET 658


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/729 (33%), Positives = 395/729 (54%), Gaps = 46/729 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G      
Sbjct: 17  MVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 77  YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 137 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+P+ S E+LL+ +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 197 PPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 255

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 256 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 314

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 315 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 372

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     ++    
Sbjct: 373 NHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 432

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+   
Sbjct: 433 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 489

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI +K  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 490 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 544

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 545 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 604

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+    ++ I T      YD    L++ +  G       +E  +  + G   +++ ++E 
Sbjct: 605 LLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDEN 664

Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISD 699
            +   ++ G       D + +V +    L F  +  Q+  M R   GV+   ++DG   +
Sbjct: 665 GENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDG--DE 722

Query: 700 VICFKICEG 708
           ++   + +G
Sbjct: 723 LLAMDVVQG 731


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+ +  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  E +R+
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K ++ +   ++  +F  +D++  +  NM  ++  R P+ + L  IL+ +L H+REV
Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545
               G  R T  +   +      + M+ +E + +++S+ G+++  SL+S ++ D      
Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            AFV+   D   K L+ + +G    V+    +A+ + G+T+ K  +   +KL  K   D 
Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYVKL--KTDADE 646

Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706
           V  V   E+ K  +F           S+D++P   +   GV+    +D  +++VI     
Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706

Query: 707 EGLTWIDSAGRSYNR 721
           + ++ +   G SY +
Sbjct: 707 DEVSILTQRG-SYKK 720


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 341/611 (55%), Gaps = 64/611 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + G  +   + K
Sbjct: 35  KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+GK HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG++DGD  AAYRYTEA
Sbjct: 95  SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VDF   Y+    EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A L L+D+P+     L+ Y+ GPDFPTG +I    + I E+Y  GRG   +RA
Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALI-NGAKGIREAYETGRGRIYIRA 273

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E +   G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RDES +D   ++
Sbjct: 274 KTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMV 333

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F L+ ++  F +NM  L  G+ P+++ L   L+ ++AHRREV+ 
Sbjct: 334 IELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQ-PRLLSLKEALQVFIAHRREVVT 392

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RRS + ++    R  IL+GL IA  NIDEII +IR    P   K  +++R          
Sbjct: 393 RRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDM 452

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL+LRL  L  LE+ +I  E   ++ 
Sbjct: 453 LARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIH 512

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT----TFCEVSRADKATLQQ 512
           E E +  +L   ++    I  E+ ++K  F+       RRT    T   +S  D      
Sbjct: 513 EIEALLEILQVPERLLAVIKEELLDIKNQFNDV-----RRTQILDTHLNLSLED------ 561

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRIL 564
            +I +E   + +S+ G+I++      +         SA   K+ D ++  + A+T D +L
Sbjct: 562 -LIAEEDRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTML 620

Query: 565 LLSTDGKAYTL 575
             +  GK Y L
Sbjct: 621 CFTNRGKVYWL 631


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 344/568 (60%), Gaps = 23/568 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EEN+  V +   +   +L YA S I  RA+PD RDG KPV RRI+++M+EMGL       
Sbjct: 16  EENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRGHV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD ++YD++VR+AQP+  R PL+ G GNFG++ GD   AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++  A L++  +DE+ VDFR  Y+ ++ EP V P+ FPNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+++P+ ++E+L++++ GPD PTGGIIV   E I ++Y  GRG FR+
Sbjct: 196 PHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIV-GLEGIRDAYAKGRGTFRM 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   R+I KI +L+ AK++  + D++D  +    +R
Sbjct: 255 RATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN   +P+ ++  ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++ HR E
Sbjct: 315 LVIEVKN-GFNPEAVLAELYRLTPMEETFGINNVALVDGQ-PRTLGLRELLQVYVDHRLE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A LNIDE+IAIIR+ D   + K  ++  F L+E Q
Sbjct: 373 VVRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLMETFELSEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++ E + L  E  ++ ++L S ++    +A E+ EV + FS
Sbjct: 433 AQYILDTPLRRLTRFDRLELEKESEQLGKEIARLTAILESDRKLRKLVAKELGEVAKKFS 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RRT   E S    A      +  EP  V++S+ G +    + +     L  + 
Sbjct: 493 TP-----RRTVLLE-SSGQTAAAVPLEVPDEPCLVLLSSTGLL----ARTAGPGPLPAES 542

Query: 548 G----DSLKIALHAHTTDRILLLSTDGK 571
           G    D L   + A T   + L+++ G+
Sbjct: 543 GSGPHDVLAAVVRATTRGEVGLVTSAGR 570


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/639 (35%), Positives = 364/639 (56%), Gaps = 35/639 (5%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S ++ L E+N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+ I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQIL-GRDGIRETF 245

Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + GRG   +R    +E++   GR     +++TE+P+Q  K+ LIE+IA+L+  +++  + 
Sbjct: 246 KTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEGIS 305

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P  + L  
Sbjct: 306 DIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLRR 364

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           +L  +L  R E + RR+ F ++  + R  I+KGLL+A   +DEII +IR+       +  
Sbjct: 365 MLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAREK 424

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + +   L+  Q +AIL ++LR L  LE  +IK+E D L  +  +   +LNS ++ +  I 
Sbjct: 425 LQTDHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKINQYQQILNSKERIFEIIL 484

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKS 535
            E+ ++ E FS       R+T   ++    D   L    I  +   V+++  G+++ +  
Sbjct: 485 EELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMPV 535

Query: 536 HSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-G 585
           +  + ++           +  D +K+ +  +  D +LL S  G AY LPA  + +S R  
Sbjct: 536 NEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTA 595

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
            G     L+ +   + I +      +D+ C LL+++  G
Sbjct: 596 KGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKSG 634


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 382/665 (57%), Gaps = 30/665 (4%)

Query: 15  ENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +N+  V++   +EE    YL YA+S I  RA+PD RDG KPV RRI++AM  +G+     
Sbjct: 6   DNLGRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGE +GK HPHGD ++Y+++VRLAQ +  RYPL+ GQGNFG+IDGDSAAA RY
Sbjct: 66  YKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR  +  EL+L  +DED VD+   ++E   EP+  PS  PNLL NG++GIAVGMAT++
Sbjct: 126 TEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNM 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +A   LI  P+  ++ L+  + GPDFPTGGII+  RE I+++YR GRG   
Sbjct: 186 APHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIM-GREGILDAYRTGRGKII 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE+  R    +V+TEIPY + K+ LIE I + +  K+I  + DIRDES      
Sbjct: 245 LRGKCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  D +L+   ++  + +++ F + +N+  +   P  + L  +L+ +L +RR V
Sbjct: 305 LVVELTREADAELVQRQLYSRTSLQSTFGI-INLALVDNKPVELNLKQLLETFLNYRRSV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ FR+   + R  I++GL  A   ID++IAIIR     D  K  ++   + T+ Q 
Sbjct: 364 VRRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  ++ +EL  LLA+ E+  S+L++       I  E+ E++  F+ 
Sbjct: 424 QAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------- 539
                 RRT        +  +L+  ++ +E I V +S  G++R   L+++++        
Sbjct: 484 E-----RRTELSAALPTEGDSLED-LLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGR 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           L A+  K+ D +       T   I L ++ G+ + +  G+++  +  G G A+   + L 
Sbjct: 538 LGAV-LKDDDEVGQMAVTSTHSDIFLFTSRGRVFAI-RGHMIPETKTGKGRAVSKFVSLT 595

Query: 598 HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +V         +T  LL ++ +G    ++  E+   TR G+  L +   +++  ++
Sbjct: 596 DDERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAII 655

Query: 655 KVTGD 659
              G+
Sbjct: 656 DTDGN 660


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 354/611 (57%), Gaps = 34/611 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  +KK
Sbjct: 6   EKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 66  SARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ E +L  +D+D VD  D ++    EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 126 RMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+++  +A  A IDN +I IE+L++ I  PDFPTGG I      + ESY  GRG   +R 
Sbjct: 186 NIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIY-GYSGVRESYLTGRGRVVIRP 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           +  VE +  G   ++V EIPY V K+ LI +IA+LI  K+I  + +I DES  E +RIV+
Sbjct: 245 KTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  ++  ++++ ++   + +++ F +N   L  GR P+++ L  I++ ++ HR +V+ 
Sbjct: 305 DIKKDAI-SNVVLNTLLKHTALQSSFGVNNVALVHGR-PRLLNLKDIIRYFVEHRHDVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL+IA  +IDE+I +IR    P   +  ++  FSLT+ Q  A
Sbjct: 363 RRTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMDAFSLTDKQAAA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-EIFSKS 489
           I+ +RL  L  LE+       D L AE E I+ L+         +   +  +K E+ +  
Sbjct: 423 IVAMRLGQLTGLEQ-------DKLRAEYEDIEKLIAHLNDVLAHVELRMEIIKNELLAVK 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LS 541
              G  R T  ++  A +    +     E + + IS+ G+I+   L  + V         
Sbjct: 476 AQYGDDRRT--DIVYASEEFNPEDFYADEEMVITISHMGYIKRTPLSEYKVQNRGGVGSK 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDL 596
               ++ D L+  + A   + +L  +  GK      Y +P G   + +  G AIQ L+++
Sbjct: 534 GSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEG---TKQSKGRAIQNLLNI 590

Query: 597 NHNQDIVTAFV 607
             + D V A++
Sbjct: 591 EPD-DKVKAYI 600


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 333/605 (55%), Gaps = 48/605 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  E VR+V+ 
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   PD+++  ++  +  ++ FP NM  L+ GR P+ M L  I+  ++  R EV+ R
Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417
           RS + +     R  +L G++IA  N+DE++ IIRN   P            PV       
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L 
Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + ++ +  +  E   V+  F+       RRT   ++  A  A   + +IE+E + V +++
Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+        S +  K+ D++       T   +L  S  GK Y L   
Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629

Query: 579 NLLSG 583
            L  G
Sbjct: 630 RLPEG 634


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 376/631 (59%), Gaps = 33/631 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +L+ ++ 
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ EVK
Sbjct: 428 TDVQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILNSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT+  E     K  +++ ++E++ + + +SN G+ +  SLKS+   S 
Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVLTLSNEGFAKRISLKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVRLDEIIKT 601

Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG 621
           IDL  ++ I+ AF + D T +  +L ++  G
Sbjct: 602 IDL--SETIMEAFSIEDFTAQKDMLFITDSG 630


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/523 (41%), Positives = 320/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ MSEMGL     + 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRPERGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +   L+   +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI +P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYETGRGTFKM 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D  + A  +R
Sbjct: 255 RATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A L+IDE+I +IR   N  + K  ++ +FSL++ Q
Sbjct: 373 VVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQFSLSDVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  ++++E D L AE E++  +L S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKYDRIELETEKDRLNAEIEELTRILESDAELRKLVSSELATVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E   A  AT+    +  +P  V++S+ G +
Sbjct: 492 -GTD---RRTDLLESGGAPVATV-PLQVADDPCRVLLSSTGLL 529


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/739 (34%), Positives = 395/739 (53%), Gaps = 82/739 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 12  VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +  E +L  V E  VDF   ++    EP V P++ P L+ NG+SGIAVGMAT+IP HN
Sbjct: 132 AAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALID+P++S +KL++ I GPDFPTGG IV +   I E+Y  GRG   +R  
Sbjct: 192 LGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVAT-AGIAEAYTSGRGSIVMRGV 250

Query: 256 WCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
             +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + DIRDES  E +
Sbjct: 251 AKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGI 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P++++ +++  +D+ ++F      L +   P+ + L  IL+E+L  R 
Sbjct: 311 RVVIELK-REATPEVVLHNLYQHTDLMSKFGAIFLAL-VNSQPRQLSLKQILQEFLGFRE 368

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426
           + L RR    +Q  +RR  ++ GLL A   +DE+I I+RN        +S   R  LT  
Sbjct: 369 QTLLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETRLDLTGE 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL + LR L +LE  +++ E   L A+ +++  LL+   +    +  E+R +K  +
Sbjct: 429 QADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRLLLSERAELLKSLKKELRSLKRRY 488

Query: 487 SKSTDLGRRRTTFC----------------EVSRADKAT----LQQAMIEKEPITVVISN 526
           S       RRT                   EV  + K T    L+  +   E   V ++ 
Sbjct: 489 SDP-----RRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSKILRPQLPAVEETLVEMTL 543

Query: 527 RGWIRSLKSHSVDLSALHFKEG------DSLKIALHAHTT-DRILLLSTDGKAYTLPAGN 579
           +G++R +   +  LS    +E       D   +A +  TT + +++++  GKAY L   +
Sbjct: 544 KGYVRRVTPSA--LSRPQSREDITIEAIDDFPVASYLTTTAETLVIINRMGKAYPLSVAD 601

Query: 580 L--LSGRGHGEAIQLLIDLNHNQD--------IVTAF----------------------V 607
           +  +S +  G  +  L+  +  +D        IV AF                       
Sbjct: 602 IPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGAGLQSSPLRRTTDGGTSPKSA 661

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGE 666
           +     L+++S++G       ++ +  + +G T +K+   +++    +  TGD V +   
Sbjct: 662 FSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLATS 721

Query: 667 NRKLLIFSID--QIPEMSR 683
             +LL   I+  QIP M R
Sbjct: 722 GGRLLRLDINSEQIPVMGR 740


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478
            AIL LRL  L  LE  +++ E   L          LAE+E +  ++    Q+ +++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 479 IREVK 483
            R  K
Sbjct: 482 PRRTK 486


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/712 (34%), Positives = 388/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIIRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIA+++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVVTN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+  + P   K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   +  S+
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653

Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           ++   +    GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/729 (33%), Positives = 395/729 (54%), Gaps = 46/729 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G      
Sbjct: 35  MVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 95  YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+P+ S E+LL+ +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     ++    
Sbjct: 391 NHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+   
Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 507

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI +K  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 508 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+    ++ I T      YD    L++ +  G       +E  +  + G   +++ ++E 
Sbjct: 623 LLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDEN 682

Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISD 699
            +   ++ G       D + +V +    L F  +  Q+  M R   GV+   ++DG   +
Sbjct: 683 GENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDG--DE 740

Query: 700 VICFKICEG 708
           ++   + +G
Sbjct: 741 LLAMDVVQG 749


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/748 (33%), Positives = 401/748 (53%), Gaps = 57/748 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++K + L   +++ YL YA+S I  RA+PD+RDGFK VHRRI++ +  +G D     +K
Sbjct: 8   DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y+++VR+AQ F    PLI GQGNFG+IDGDSAAA RYTE+
Sbjct: 68  SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ IL  +D + V FR  Y+    EP V P++ P++L NGTSGIAVGMAT+IP H
Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  AL++NP + + +++E++ GPDFPTGG I+ +   I+ ++R GRG   +R 
Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGT-SGILNAFRTGRGSIVMRG 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           +  VEE+      IVVTEIPYQV K++L+EKI EL   K +  + +IRDES    +RIV+
Sbjct: 247 KASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVI 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  +  +++  ++  + ++  F  N+  L  G VPQ + L   L  +L  R +V+ 
Sbjct: 307 EIK-RDGNSQVILNQLYKHTQLQMNFSANVLALVKG-VPQTLGLKASLTCFLEFRYDVIV 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------- 419
           RR+ + ++    +  IL G  +A  +ID++I +I+     K  + +              
Sbjct: 365 RRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSY 424

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL-AEKEKIDSLL 465
                         + L+E Q +AIL+LRL  L  +E+ +IKS+L + + A +E ID +L
Sbjct: 425 LALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYID-IL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
              ++    +  E + +K  +        RR+   E+  A+     + +I  E + V IS
Sbjct: 484 GKPERVRKIMTDEFKTIKADYPTP-----RRS---EILPAEDDIEDEDLIPSEEMVVTIS 535

Query: 526 NRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
             G+I+   L ++   L      S +  KE D ++  + A+T DR+L  +  G+ Y +P 
Sbjct: 536 FGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPV 595

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEI 631
             L  G  +  G AI  ++ +  ++ I +        D    LL ++SKG       S+ 
Sbjct: 596 HQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDF 655

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVRLQ 690
                 GK  + +   E +  V     D+  ++   + L I F    +   S      ++
Sbjct: 656 ERIQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVR 715

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRS 718
             K      +I   + EG   +D A R+
Sbjct: 716 GIKLAHDDTIISASVLEGFN-VDPAERA 742


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478
            AIL LRL  L  LE  +++ E   L          LAE+E +  ++    Q+ +++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 479 IREVK 483
            R  K
Sbjct: 482 PRRTK 486


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478
            AIL LRL  L  LE  +++ E   L          LAE+E +  ++    Q+ +++   
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481

Query: 479 IREVK 483
            R  K
Sbjct: 482 PRRTK 486


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 348/618 (56%), Gaps = 60/618 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 22  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 82  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 142 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  P+ ++++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 202 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRAKCHFE 260

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +    ++    R
Sbjct: 261 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 320

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 321 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 379

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  +L+GL +A  NIDE I IIR                              
Sbjct: 380 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 439

Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                 N D  +P  + R         + L++ Q   IL +RL+ L  LE+ +I +E  +
Sbjct: 440 ADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 499

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++  E +  +L    +    I  E+  +++ F +S  +G RR+T  E S  D +T  + 
Sbjct: 500 VMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSK-VGARRSTI-EHSAQDLST--ED 555

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL 
Sbjct: 556 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILC 615

Query: 566 LSTDGKAYTLPAGNLLSG 583
            S  G+ Y L    + SG
Sbjct: 616 FSNRGRLYWLKVWEVPSG 633


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/654 (34%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+
Sbjct: 12  STDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARV 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQ+VYD+LVR+AQ F  R  L+ G GNFG++D D  AA RYTE R+T 
Sbjct: 72  VGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAAMRYTECRLTA 131

Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            A E +LQ +D + VDF   Y+    EP+V P++ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 132 FAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHNLS 191

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +ALI NP ++  +L+++I  PDFPTG +I+  +E I E+Y  GR    +R    
Sbjct: 192 ELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIM-GQEGIREAYTTGRSSITLRGVAR 250

Query: 258 VEEV-GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           VE +  RG      I++TE+PYQ  K+ +IEKIAEL+  K++  + DIRDES      V+
Sbjct: 251 VETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDRSGMRVV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P +++ +++  + ++  F +NM  +  G  P+ + L   L+ +L  R EV+ 
Sbjct: 311 IELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGE-PRTLTLRDALQAFLDFREEVIE 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + +Q  + R  +L+G L+A   +D +IA+IR   +    +  + +   L+E Q D 
Sbjct: 370 RRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREELQAVLGLSEAQADG 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ E++++K  F+   
Sbjct: 430 ILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKARFASP- 488

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542
               RR+  C     D       +IE     + ++ +G+I+ +      +        + 
Sbjct: 489 ----RRSRLC---LEDGELGTDDLIENRETVIFLTEQGYIKRMGLEEFQVQGRATRGKAG 541

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
              KE D+++      + D IL  +  G  YTLPA  +  G     G AI  L+ +   +
Sbjct: 542 ARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLPAHQIPQGSRAARGSAIVQLLPITREE 601

Query: 601 DIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            + +       S  + LV+ ++G           AN R     + +S EE  +L
Sbjct: 602 RVTSMVPVSQFSDDEYLVMLTRGGYIKKTALSAFANVRS-NGLIAISLEENDEL 654


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/389 (47%), Positives = 273/389 (70%), Gaps = 8/389 (2%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 3   DGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSY 62

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RYPL+ GQGN+G  D   S AA RYTE+R+++ AE++L  + +  VD+   ++    EP 
Sbjct: 63  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPK 122

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           + P++ PN+L NGT+GIAVGMAT IP HNV+EI +A LALID P  S+++LLE++ GPDF
Sbjct: 123 MLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDF 182

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT   I+  R+ I + Y+ GRG  R+RA W  E+   GS   V+T +P+QV  ++++E+I
Sbjct: 183 PTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKED---GS--AVITALPHQVSGAKVLEQI 237

Query: 287 AELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           A  + AK++P++ED+RDES  +   R+V+ P+   +D D +M  +F  +D+E  + +NMN
Sbjct: 238 ANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMN 297

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P V  L  IL EWL  RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I
Sbjct: 298 MIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVI 357

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILN 433
            IIR ED PKP+++ RFS++E Q +A  N
Sbjct: 358 HIIRTEDDPKPLLMQRFSISETQAEASSN 386


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 364/627 (58%), Gaps = 50/627 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   V+   +   +E+ Y+ YA+S I  RA+PD RDG KPVHRRI++AM + G+   +
Sbjct: 13  TGIAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARS 72

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A +KS+ IVGE +G  HPHGD ++Y++L R+AQ F  R PL+ GQGNFG++DGD  AA R
Sbjct: 73  AHRKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+ +AE +L  ++ D V+F   Y++  SEP V P+ FPNLL NG+SGIAVGM+T+
Sbjct: 133 YTEARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTN 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + LI +PE ++E L+ ++ GPDFPTG  IV  + +I ++Y+ GRG  
Sbjct: 193 IPPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIV-GQNAIYKAYKTGRGRV 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           RVRA + V++       IV+TE+P+Q  K+RL+E+IA+ + A  I  + D+RDES  D +
Sbjct: 252 RVRAEFDVQD-----DRIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGI 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R  +PD++   + +   +E+ F + +N+  +   PQV+ L   L E+L HRR
Sbjct: 307 RVVVELK-RGANPDIVKNQL-LEHHLESTFGV-INLALVDGQPQVLTLKETLHEYLEHRR 363

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM--------- 417
            V+ RRS + +     R  IL+G L A   +D+++ IIRN    D  K  +         
Sbjct: 364 TVVRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESD 423

Query: 418 -----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                +  F  +E+Q + I+ ++L SL  LE  +I+ E +++    E++ ++LN+  +  
Sbjct: 424 ERGESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPDELD 483

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E+  +++ ++       RRT   E    D     + +I +E + VV++   +I+ 
Sbjct: 484 AVVEDELATIRDKYADE-----RRTRIIE---DDGTVTHEDLIAQEDVVVVVTEDDYIKR 535

Query: 533 LKSHSVDLSALH----------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-- 580
           +     D  + H           K+GD++     A+T D +L  ++ G+ Y L    +  
Sbjct: 536 MSLE--DFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPE 593

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           +S    G++   L++L+  + I TA V
Sbjct: 594 MSRTARGKSAVNLLELDDGEQI-TAVV 619


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 15  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIV-GLGGIKDAYAAGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 254 RATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RFSL+E Q
Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERFSLSEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  ++++E D L  E  ++ ++L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELETERDKLSQEIAELTAILESDAELRKLVSSELAAVAKKF- 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E + +  A++    +  +P  V++S+ G +
Sbjct: 491 -GTD---RRTVLLESAGSQVASVPLE-VADDPCQVLLSSTGLL 528


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 385/665 (57%), Gaps = 38/665 (5%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++ 
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM- 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KR
Sbjct: 180 GKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKR 239

Query: 295 IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           I  +  +RDES  E VR V+  K R    ++++ ++F ++ M+T F  NM  +  G +P+
Sbjct: 240 IEGITAVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPK 297

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NE 410
           ++ L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    +
Sbjct: 298 ILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETD 357

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            + +  ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++
Sbjct: 358 AEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPER 417

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529
               I  E+ EVK  FS      +RRT   E+      +L+ + +IE+  + + +SNRG+
Sbjct: 418 VSQIIKDELDEVKRKFSD-----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGY 469

Query: 530 IRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+ L        K     +     K+ D ++  +   T D +L  +  G+ Y L    + 
Sbjct: 470 IKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIP 529

Query: 582 S-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IA 633
             GR   G  +  L+ L+ ++ I T    +S       L   +  G   IV+ + +   A
Sbjct: 530 EYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFA 586

Query: 634 NTRK-GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQ 690
           N R+ G   L +  E+++  V+   GD   ++G      + F+   +  MSR   GV+  
Sbjct: 587 NIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGV 646

Query: 691 SYKDG 695
           + ++G
Sbjct: 647 NLREG 651


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 299/477 (62%), Gaps = 18/477 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQI 475
            AIL LRL  L  LE  +++ E   L          LAE+E +  ++    Q+ +++
Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKV 478


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 246/712 (34%), Positives = 389/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +      I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+  + P   K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   +  S+
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653

Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           ++  T+    GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 654 LLDFTKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 368/657 (56%), Gaps = 65/657 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARIV
Sbjct: 11  ISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NP  +IE+L+E +  PDFPT GII  +   + ++YR GRG   +RAR   E
Sbjct: 191 LDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGT-SGVRDAYRTGRGRVVMRARCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    R
Sbjct: 250 DLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L+HRRE++ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  N+D +I +I+    P PV                 M+SR 
Sbjct: 369 DLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSRV 427

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q   IL +RL+ L  LE+ +I  E  +++ + 
Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVMEQI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  ++  F      G  R +  EV+  D     + +I  +
Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEF------GDARRSHIEVNAYDIDV--EDLITPQ 539

Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V IS+ G+++S  L  +           A   KE D ++    A+T D +L  S  G
Sbjct: 540 DLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRG 599

Query: 571 KAYTLPA-GNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGN 622
           + Y +    + + GRG  G+ +  L  L   + I T      +D    + + +++G 
Sbjct: 600 RVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGT 656


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/705 (34%), Positives = 378/705 (53%), Gaps = 39/705 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG V+G 
Sbjct: 24  IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A  +L 
Sbjct: 84  YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 144 DIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCVA 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I++P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE   G 
Sbjct: 204 YIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEEKKNGR 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY V K+RLIE IA+L+  KRI  + D+ DE+      ++    +  +P ++
Sbjct: 263 AQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDANPQVV 322

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + ++    
Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKARE 381

Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L  L  
Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL +L A+    + +L    +    +  E+ E+K  F        RRT   E
Sbjct: 442 LEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDD-----RRT---E 493

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553
           +         + +I +E     ++  G+I+        + K     +S +  KE D ++ 
Sbjct: 494 IETVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQE 553

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                T D +L ++  G     K YT+  G+  S    G  I  L+ L   + +      
Sbjct: 554 MFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTS---KGTNIVNLLQLAEGEKVTNMLCQ 610

Query: 609 --DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662
             D+  +   V+      +++ +  E  AN RK        +E       ++T  H  + 
Sbjct: 611 SKDTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLI 670

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           V   N + + F+ +    M R G GVR     +G   +V+   IC
Sbjct: 671 VATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEG--DEVVGVCIC 713


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/745 (32%), Positives = 408/745 (54%), Gaps = 40/745 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK ARIVGE +GK
Sbjct: 10  IRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMGK 69

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ+AE ++ 
Sbjct: 70  YHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMMD 129

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  HN+ EIC+A L 
Sbjct: 130 DIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAILY 189

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+      E  R  
Sbjct: 190 EVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVDATEDRR-- 246

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             +++  IPY V K+ L++ IA+L   + I  + DI+DES  + + IV+  ++  + P L
Sbjct: 247 --LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRDDDIKP-L 303

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + +E+   + +N++ +G  P++M L  ++  ++ HR +V+ RRS FR++   
Sbjct: 304 VLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLERKK 362

Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+++L G+L A  +ID ++ I+   ++ D+    + + F L + Q+ AIL +RL+ L  
Sbjct: 363 ERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEMRLQRLVN 422

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            E+  ++SE+  L  E + ++ ++ S  ++ ++   EI E+++   K  D  R R  F  
Sbjct: 423 TEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKKEITEIQK---KYGDKRRSRIKF-- 477

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS----------HSVDLSALHFKEGDSL 551
             R       + +I  E   +++S  G ++ +++            V+ S    K  DS+
Sbjct: 478 --RGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTS---MKTSDSI 532

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           K  +H  + D +   +  G     KAY +P  +  S      A   L       +I+ A 
Sbjct: 533 KSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA- 591

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             +    L++V+  G+        +  +   G   + +  ++++  V    GD ++ V+ 
Sbjct: 592 PPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNIFVLS 651

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              K  +F+  +I E  R   GVR     +G  + +  F +      +  + + Y +  N
Sbjct: 652 SKGKASVFNTSEIRETGRTSMGVRSMRLNEGD-TILTAFVVNSDEDILSISEKGYGKRTN 710

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGK 749
                +  RG  G +V +   R+G+
Sbjct: 711 ISEFPIHHRGSSGVMVYRDTERTGR 735



 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 14/219 (6%)

Query: 484 EIFSKS-TDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRS------LKS 535
           EI  KS T LG     F ++++ ++ T + +A  EK    ++++  G ++         S
Sbjct: 560 EIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDS 619

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
            S  L  +  ++ D L    +      I +LS+ GKA       +         ++ +  
Sbjct: 620 KSSGLKIITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRETGRTSMGVRSM-R 678

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           LN    I+TAFV +S   +L +S KG       SE   + R     +     E+   V  
Sbjct: 679 LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSH 738

Query: 656 VTG----DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                  D V +V  N K +     +IPE SR   GV+L
Sbjct: 739 AIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKL 777


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/686 (35%), Positives = 371/686 (54%), Gaps = 82/686 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D I  ++  V  NV  V L   L++ ++ YA+S I +RA+PD+RDG KPVHRR+++ M +
Sbjct: 41  DGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYD 100

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +      KKSAR+VG+VIG+ HPHGD +VY+++VR+AQ F  R PLI GQGNFGNIDG
Sbjct: 101 LKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDG 160

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE RMT++AE++LQ +D++ VD    Y+  +  P V P++FPNLL NG+SGI
Sbjct: 161 DGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGI 220

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +AL+DNP++ ++ L+ YI GPDFPTGG IV     I E+Y
Sbjct: 221 AVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIV-GNAGIREAY 279

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RAR  +EE   G   I V EIPY V KS ++++IAEL+  K+I  + ++ D
Sbjct: 280 RTGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVND 339

Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            S +D  VRI +  K R    + ++ ++F  + +++ FP+NM  L     P+ +PL  IL
Sbjct: 340 LSDKDNQVRIAIDLK-RDAYEEAVLNNLFERTSLQSSFPINMIALVHNH-PRQLPLKEIL 397

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
            E++  RREV+ RR+ + ++   R+  + +GL++A  NI++I+ +I    N D+ +  ++
Sbjct: 398 SEFINFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLM 457

Query: 419 ------------------------------------SRFSLTENQVDAILNLRLRSLRKL 442
                                                ++ L+E Q  AIL L+L+ L  L
Sbjct: 458 EEPWDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHL 517

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
              +I+++   L+   +    +LN+  +    I  E+ EVKE F+      +RR+ F E 
Sbjct: 518 AGDEIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFAD-----KRRSDFTE- 571

Query: 503 SRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
              D   L +A  I  + + V +S  G+I+     + +          A   K+ D +  
Sbjct: 572 ---DYGKLSKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISR 628

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLI---- 594
               +T D ++  +  G     K + LP     + RG           GE I  L+    
Sbjct: 629 MAVTNTHDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSE 688

Query: 595 -DLNHNQDIVTAFVYDSTCKLLVVSS 619
            D NH   + T   Y    KL    S
Sbjct: 689 FDENHFIIMATVMGYIKKVKLSAFKS 714


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/630 (36%), Positives = 354/630 (56%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 14  DRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 74  SARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT +A  +++ +D D VDF   Y+ +  EP V PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 134 RMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    +DN     E ++E ++E + GPDFPT G+IV   + I ++YR GRG  
Sbjct: 194 NLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGG-QGIQDAYRTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  RGS  IV+TE+PYQV    LI  IAE +   +I  +  I D+S++ V 
Sbjct: 253 RMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGISKIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K  ++   +++ +++  S ++T F  NM  +  G VP+ + LD +++ ++AH+
Sbjct: 313 MRIVVVIKRDAV-AKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVAHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR+    D  +  ++   ++ E
Sbjct: 371 LEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVARTGLMDLLTVDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  E+ E+ E 
Sbjct: 431 IQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRQIVKDELSEIVEK 490

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 491 YGDD-----RRTRIIA---ADGDVTDEDLIAREDVVVTITETGYAKRTRTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +K      T D +L  +T G     KAY LP  N  + RG   A  L
Sbjct: 543 KGVKGAELKQEDIVKNFFVCSTHDWLLFFTTKGRVYRAKAYELPEAN-RTARGQHVANLL 601

Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKG 621
               +   Q I+    Y+    L++ +  G
Sbjct: 602 AFQPDEKIQSIIHIKSYEDAPYLVLATRNG 631


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 319/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RMT+   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 255 RATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFN 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL++ Q
Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  ++++E D L  E E++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKFDRIELEAEKDRLNEEIEELTRILDSDAELRKLVSAELAAVAKKFG 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S    A +    +  +P  V++S  G +
Sbjct: 493 ND-----RRTLLLE-SAGTPAAVVPLQVADDPCRVLLSATGLL 529


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/698 (33%), Positives = 397/698 (56%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             RR+   E++   +      +IE E   V ++  G++     RS  + +VD   L  +E
Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L    +A TT  +L+ +  G     P   L   R    GE + Q L++   N++I+ 
Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592

Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658
           A + D   K     V+  G     E  EI    T K KT  + K+ + ++ +  V  +  
Sbjct: 593 AELVDDFTKETYFAVTRLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + V +V  N   L FSI+ +P + S+  GV+  + KD 
Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 331/597 (55%), Gaps = 50/597 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KSA+IVG+V+G 
Sbjct: 26  MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVAGRPYRKSAKIVGDVMGN 85

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR+ +VA  +L 
Sbjct: 86  YHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMDPDPPASMRYTEARLEKVANALLD 145

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF + Y+    EP V P+ FPNLL NG  GIAVGMAT+IP HN+ E+ +  LA
Sbjct: 146 DLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCLA 205

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I NP I+ E+L+EYI GPDFPT  +I+  +     +Y  GRG   +RAR  VE      
Sbjct: 206 FIANPAITSEELIEYIPGPDFPTAPLIL-GQSGARSAYLTGRGSIMMRARHEVETGRNDR 264

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IV+T IPYQV K+ L+EKIAE    KRI  + DIRDES+ E VR+V+  K R   P++
Sbjct: 265 QSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIRDESSREGVRVVVDLK-RDASPEV 323

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  S  +  FP NM  +  GR P+V+ L  I++ +++ R +V+ RR+ F +    
Sbjct: 324 VLNQLWRYSPAQASFPANMLAIRGGR-PEVLALRDIIQAFISFREQVITRRTKFELNKAR 382

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----------------- 416
            R  IL GL++A  N+DE++AIIR    P            P+                 
Sbjct: 383 DRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLRKEWPIGDIAQYIALVEAIEPSS 442

Query: 417 --MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + L+E QV AIL+LRL  L  L   +I  EL  L  + E   S+L   ++ +  
Sbjct: 443 DEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELKELATKIEYYLSILADRRKLYQV 502

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E++ +++ ++             E++ A      + +IE+E + V +++ G+I+   
Sbjct: 503 MREELQAIRDQYATP--------RMSEIAPAWDGVDDEDLIEQEDMVVTVTHGGYIKRTP 554

Query: 535 SHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            H+           S++  K+ D++       T + +L  +  G+ Y L    L  G
Sbjct: 555 LHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRVYRLKVWKLPEG 611


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 355/618 (57%), Gaps = 73/618 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM+++G     A+KKSAR+V
Sbjct: 27  VNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKSARVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM ++
Sbjct: 87  GDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRMERL 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D++ VDF   Y++   EP+V PSKFPNLL NG+SGIAVGM T+IP HN+ E+
Sbjct: 147 AEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHNMTEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               L LIDNP  ++  L+E+I GPDFPTG II   RE IV +Y  GRG   +RAR  +E
Sbjct: 207 ISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIIT-GREGIVRAYETGRGQVTIRARSDIE 265

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317
              RG    I+ +EIPYQV K+RLIEKIAEL+  K++  + DIRDES  + +RIV+  K 
Sbjct: 266 TSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIELKR 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++   +++ +++ ++ +ET F   M  +  G+ P+ + L  +L  ++AHRR+V+ RR+ 
Sbjct: 326 DAIS-QVVLNNLYAMTSLETTFGAVMLAIDGGQ-PRTLNLKEMLDRFIAHRRDVVTRRTR 383

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408
           + ++    R+ I++GLL+A   ID ++++IR                             
Sbjct: 384 YELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFATL 443

Query: 409 ---NEDKPKPVM---VSR-----------------FSLTENQVDAILNLRLRSLRKLEEY 445
              + DK K  M   VSR                    +E Q   IL +RL+ L  L+  
Sbjct: 444 QRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGFSEGQAQNILEMRLQRLTGLQRE 503

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  EL  L+ +  ++  +L + +   N I  E+ E++E +       +RRT   E++ A
Sbjct: 504 ELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGD-----KRRT---EITGA 555

Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S+ G+I        R+ K      +    KE D +     A
Sbjct: 556 VDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLFVA 615

Query: 558 HTTDRILLLSTDGKAYTL 575
            T   ++ ++T GK Y+L
Sbjct: 616 STHAYLMPITTKGKLYSL 633


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 336/608 (55%), Gaps = 49/608 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ V  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G   G  +K
Sbjct: 5   EDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGRPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTE
Sbjct: 65  KSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ + A ++L  +D+D VDF+  Y+    EP V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 125 ARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A LA+IDNP I++E+L+  + GPDFPTG +++  +     +Y  GRG   +R
Sbjct: 185 HNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMML-GQGGARSAYATGRGSIMMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           +   +EE       IV+T IP+QV KS L+EKIAE    KRI  + DIRDES  E VR+V
Sbjct: 244 STHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVRVV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++  ++  +  ++ FP NM  +  GR P++M L  IL  ++  R EV+
Sbjct: 304 IELK-RDATAEVVLNQLWRHTPAQSSFPANMLAIRGGR-PEMMGLKDILSAFIIFREEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----- 416
            RR  F +     R  IL GL++A  N+DE++ IIR    P            P+     
Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421

Query: 417 -------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                          + + L+E QV AIL+LRL  L  L   +I  EL  L AE E++ S
Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    + +  +  E+  V++ F+       RRT       A      + +IE+E + V 
Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATP-----RRTLLAP---AADGIDDEDLIEREEMVVT 533

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I        R+ +      + +  K+ D +       T   +L  ST GK Y +
Sbjct: 534 VTMDGYIKRTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRM 593

Query: 576 PAGNLLSG 583
               L  G
Sbjct: 594 KVWRLPEG 601


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+ +  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  E +R+
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K ++ +   ++  +F  +D++  +  NM  ++  R P+ + L  IL+ +L H+REV
Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545
               G  R T  +   +      + M+ +E + +++S+ G+++  SL+S ++ D      
Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            AFV+   D   K L+ + +G    V+    +A+ + G+T+ K  +   +KL   V  D 
Sbjct: 594 NAFVFENIDQDVKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYIKLKTDV--DE 646

Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706
           V  V   E+ K  +F           S+D++P   +   GV+    +D  +++VI     
Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706

Query: 707 EGLTWIDSAGRSYNR 721
           + ++ I   G SY +
Sbjct: 707 DEVSIITQRG-SYKK 720


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 343/599 (57%), Gaps = 31/599 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T   + ++ V L+  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G   
Sbjct: 2   TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ K AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA
Sbjct: 62  DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +A  +L  +DE+ VDF+  Y+ ++ EP+V P + PNLL NG++GIAVGMA
Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T++P HN++E+ +A   ++D+PE   E+ L    E + GPDFPT G+IV  RE I E+YR
Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIV-GREGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA   VEE  RG   +VVTE+PYQV    L E IAE +   R+  + +I DE
Sbjct: 241 TGRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADE 300

Query: 305 SAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S++ V R ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ 
Sbjct: 301 SSDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDG-VPRTLRLDELVRY 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ H+ EV+ RR+ +R++  + R  IL+GL  A   +D +IA+IR+          ++  
Sbjct: 360 YVLHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLMDL 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q  AIL+++LR L  LE  +I  EL  L      + ++L+S ++Q   I  E+ 
Sbjct: 420 LDIDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAILDSPERQRQIIRDELA 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH---- 536
           E+ E +        RRT F      D     + +I +E + V I+  G+ +  KS     
Sbjct: 480 EIVEKYGDD-----RRTKFVA---NDGDVSMEDLIAEEEVVVTITRTGYAKRTKSDLYRS 531

Query: 537 ----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                  +     K+ D +       T D IL  +  G     KAY LP  N  +   H
Sbjct: 532 QRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAH 590


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/696 (33%), Positives = 396/696 (56%), Gaps = 26/696 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGII-QGVDGIKKAYESGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 RVDEEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGLREIIESYLNHQIEVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ F  TE Q +AI
Sbjct: 361 RTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E D L A  +K+ ++L+        I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHDALLTVIKDELNEIKKKFK---- 476

Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
           + R      E+S  + DK    + M+  E + + I+  G+I+   + S + S    +  K
Sbjct: 477 VDRLSAIEAEISEIKIDK----EVMVPSEEVILSITRHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVIN 592

Query: 605 AF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH 660
            +   D       V +  N  I + S      TR  K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQ 652

Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           +  V  N+ + L +S  ++ +   R  GV+  + KD
Sbjct: 653 LITVITNKGMSLTYSTAELSDTGLRAAGVKSINLKD 688


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 256/744 (34%), Positives = 408/744 (54%), Gaps = 52/744 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           + ++ V +      RYL YA+S I  RA+PD+RDG KPV RRI++ M  ++ L   A  +
Sbjct: 22  DRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKPR 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI+GQGNFG+I G  AAA RYTE
Sbjct: 82  KCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARYTE 141

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +AE ++  +    V+ R  Y+    EPVV P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 142 ARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNIPP 201

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LI + + ++ +L+++I GPDFP GG IV  + S+   Y+ GRG  +VR
Sbjct: 202 HNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVKVR 261

Query: 254 ARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
             W  E   R  G   +VV  +PY V+   L+ +I  ++ ++++P L D+ DE+ +   +
Sbjct: 262 GEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKNGL 321

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWL 365
           +IVL  K  + DP+ +M  ++  +++E  F +NM  L    S   VP+   L  +L+ +L
Sbjct: 322 KIVLEIKPDA-DPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYFL 380

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRF 421
             R   + +R  +++Q ++RR+ ILKG  I + ++D+ + +IR     +D  K +M + F
Sbjct: 381 DFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN-F 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AIL L+L  + KLE   I+ EL    AE EKI  +L S K+ W  +  E++E
Sbjct: 440 PLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELKE 499

Query: 482 VKEIF--SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----K 534
           + + F   + T LG       E++  D     QA I +E   VV+S  GWI+ +     K
Sbjct: 500 LADEFPEKRQTKLGSSE----EITEFDP----QAYIVRENTNVVVSREGWIKRVGRLKTK 551

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             + +L+    +EGDS+       T D ++  S+DG AYTLP   +    G+GE +    
Sbjct: 552 EGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHA 611

Query: 595 DLNHNQDIVTAFVYDS---------------TCKLLVVSSKGNAFIVEESEI-IANTRKG 638
            ++    +V A   DS               T  +L+V+ KG    +  S    A+T+ G
Sbjct: 612 RMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAG 671

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYK 693
           + + ++  ++++     V   + + +  ++ ++L   I++   +S      KG+RL+   
Sbjct: 672 RKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEK-G 730

Query: 694 DGGISDVICFKICEGLTWIDSAGR 717
           D  I  +   +  + L  I++AG+
Sbjct: 731 DQVIGVLQLTRPSDCLRVINTAGK 754


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 356/648 (54%), Gaps = 70/648 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA
Sbjct: 50  MNSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 109

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG V+G  HPHGD ++YD++VRLAQPF  RYPLI GQGNFG++DGD  AA RYTE+RM
Sbjct: 110 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRM 169

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +D D VDF   Y+E  SEP V P++ PNL+ NG++GIAVGMAT+IP HN+
Sbjct: 170 TRLAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNL 229

Query: 197 QEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            E+  A +AL+   +      +E +LE++ GPDFPTGG +   R ++V++Y+ GRG F +
Sbjct: 230 TEVLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLY-GRGNLVQTYKTGRGRFMM 288

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E++  G   I+ TEIPYQV KS LI++IAEL+  K +  + D+RDES  D   +
Sbjct: 289 RAKCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRI 348

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++  ++  + M+  F +    +  G+ P+ +PL+  +  ++ HR +V+
Sbjct: 349 VIELKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQ-PKELPLNEAIWAFIEHRIDVV 407

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS------- 422
            RR++F +     R  +L G  IA  ++D++I IIR        +  + S FS       
Sbjct: 408 RRRTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLR 467

Query: 423 ------------------------------------LTENQVDAILNLRLRSLRKLEEYQ 446
                                               L+  Q+DAIL L+L  L +L   +
Sbjct: 468 GTELQGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDE 527

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           + +EL  +     + +S+L S K+    I  E+ ++++ +  +     RRTT  + S   
Sbjct: 528 LLNELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDA-----RRTTILDEST-- 580

Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558
           + TL+  +I  E + V +SN G++        R  +        +  +E D +   +   
Sbjct: 581 ELTLED-LIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDS 639

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           T   +L  +  G+ Y L    +  +   G G+A+  L+DL   + +VT
Sbjct: 640 THAYLLCFTNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVT 687


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 257/771 (33%), Positives = 416/771 (53%), Gaps = 54/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           E R+       L   D DA      VDF   ++    EP + P++ P+LL NG+SGIAVG
Sbjct: 198 ECRLDVGCFFFL---DIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVG 254

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ G
Sbjct: 255 MATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTG 313

Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDE
Sbjct: 314 RGRVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDE 373

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R  DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ +
Sbjct: 374 SDRSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAF 432

Query: 365 LAHRREVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
           +  R  V+ RR+ F++ QA++R+  I++G++I   N+D +I IIR   N    +  ++  
Sbjct: 433 IDFRCSVIERRARFKLSQALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE 491

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  
Sbjct: 492 FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEAT 551

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K  F+        R +F E S A        +I  E + +++S +G+++ +K ++ +L
Sbjct: 552 DLKNKFATP------RRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNL 604

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------GEAI 590
                      K+ ++ +T+D I+  + D   Y    G + S R +          G  +
Sbjct: 605 QNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPL 664

Query: 591 QLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLK 643
             L+ L+  + I     V  F  D    +L V    N +I  V  +   A    G   ++
Sbjct: 665 VQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGIISIQ 720

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           ++  +++K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G    + 
Sbjct: 721 LAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG--DKMA 778

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750
              I    +   +   +Y+R  +    WL      G+G  VP    R G F
Sbjct: 779 SMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 827


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/683 (33%), Positives = 367/683 (53%), Gaps = 61/683 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+ + A  +L 
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP I + ++++ I GPDFPTG +I+  R  I  +Y  GRG   +R    +E +    
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGVATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +++
Sbjct: 240 EQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G+ P+ M L  +L+ +++ R +V+ RR+ + ++    
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR--------------------- 420
           R  +L GL I+  NIDE+I +IR+   P    + +M  R                     
Sbjct: 359 RAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRIN 418

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S  +    + 
Sbjct: 419 EDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E+  +++ F        RR+   E          + +I +E + V +S+ G+I      
Sbjct: 479 DELVSIRDEFGTP-----RRSQIVE---GGPDMDDEDLIAREDMVVTVSHLGYIKRVPLT 530

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
             R+ +      S +  ++ D +     A+T   +L  S+ G     K + LP G   S 
Sbjct: 531 TYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQS- 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637
              G+A+  ++ L   + I T            T  ++  +++G     +  + +   R 
Sbjct: 590 --KGKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRN 647

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH 660
           GK  +K+  E    L V+   D 
Sbjct: 648 GKIAMKLDEEGDEILSVETCTDR 670


>gi|332294867|ref|YP_004436790.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
 gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/660 (36%), Positives = 378/660 (57%), Gaps = 47/660 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +VEE VK         + YL YA+S I  RAIPD+RDG KPV RRII+AMSEMG+ +   
Sbjct: 7   IVEEEVK---------DSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKP 57

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG++DGD+AAA RY
Sbjct: 58  HKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRY 117

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ +++  ++  +  + V  +D ++    EP V P+KFP LLANG SGIAVGMATSI
Sbjct: 118 TEARLAKISNTLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSI 177

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A L ++ NP++S E+LL+ + GPDFPTGGIIV  +  I E +  G+G   
Sbjct: 178 PPHNLGELIDALLLILKNPQVSEEELLKVLTGPDFPTGGIIV-GKNGIKEYFLTGKGKII 236

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +R R  + E+G  +  +V++EIPY V K+ L+EKI +LI  KR+  + +IRDES  E +R
Sbjct: 237 LRGRHKI-EMGSKTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIR 295

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL  K +  + + +++ ++  + M+  F + M  L  G VP+V+P+  +L  +L  R++
Sbjct: 296 IVLDLK-KGANSEKIVKKLYKHTTMQITFGVIMLSLVAG-VPKVLPVKDVLLHFLTFRKD 353

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           +  +R    ++ + +R+ +L  L  A   ID++I II+   N  + K  +     ++E  
Sbjct: 354 IQRKRLEKILEDLKKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCEFLQISEEG 413

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRL+ L  LE  +I  +L+  L E ++ +  LN   +    +  E+ E+K  F+
Sbjct: 414 AQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEILENELVEIKSNFA 473

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSVDLSALHFK 546
                 +RRT   E+S   +          E  + V IS  G+I+ +K    D+     K
Sbjct: 474 D-----KRRT---EISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKK---DVFERQNK 522

Query: 547 EG-------------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
            G             D ++ ++     DRIL +S+ G+AYTL A ++   S    G  I 
Sbjct: 523 GGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTGIA 582

Query: 592 LLIDLNHNQDIVTAF-VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ L+ ++ I     + +   K  +++ +S G    ++   I++  R G   +K++  E
Sbjct: 583 NILPLSEDEKITFMVQIKEEEIKKDIILATSMGYLKKIKLENIVSKRRNGVIAIKLNDSE 642


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 355/630 (56%), Gaps = 33/630 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G      
Sbjct: 35  MVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 95  YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     ++    
Sbjct: 391 GHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   +  E+   
Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDEL--- 507

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI SK  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 508 DEIVSKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 652


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/652 (36%), Positives = 353/652 (54%), Gaps = 56/652 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G   G  ++KS
Sbjct: 31  DISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVPGRPYRKS 90

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGD S+YD+L RLAQ +  R PLI GQGNFG++D D  A+ RYTEAR
Sbjct: 91  AKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPASMRYTEAR 150

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D+D V+F   Y+    EP V P++FPN+L NG  GIAVGMAT+IP HN
Sbjct: 151 LAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMATNIPPHN 210

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A +DNP ISI++L+  + GPDFPTG +I+  +    ++Y  GRG   +R+R
Sbjct: 211 LGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALIL-GQSGARQAYHTGRGSIIMRSR 269

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             VEE       IV+TEIPYQV KS L+EKIAE    KRI  + DIRDES  + VRIV+ 
Sbjct: 270 HEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQGVRIVMD 329

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   PD+++  ++  +  +T FP NM  +  GR P+ + L  I++ ++  R EV+ R
Sbjct: 330 LK-RDATPDVVLNQLWRHTPAQTSFPANMLAIRGGR-PETLNLRDIVESFVKFREEVITR 387

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           RS F +     R  IL GL+IA  N+DE++ IIR    P   +  ++SR           
Sbjct: 388 RSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEIESYI 447

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + L+E QV AIL+LRL  L  L   +I  EL  L     ++  +L 
Sbjct: 448 KLVEAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAELLEILG 507

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +  + +  +  E   +   F+       RRT   E++ A      + +IE+E + V +++
Sbjct: 508 NRVRLYQVMVEEFDAILVEFATP-----RRT---EIAPAGDDIDDEDLIEREDMVVTVTH 559

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ +      S +  K+ D++       T   +L  S  GK Y     
Sbjct: 560 GGYIKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVW 619

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN 622
            L  G  +  G  +  L+ L   + I T           ST  ++  ++ GN
Sbjct: 620 RLPEGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGN 671


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 336/592 (56%), Gaps = 34/592 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G      F K A
Sbjct: 28  VMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNGGFSKCA 87

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +M
Sbjct: 88  RVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQRYTECKM 147

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT IP HN+
Sbjct: 148 APLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATRIPPHNL 207

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +EI +AAL  ++NPE S E+LLE     I GPDFPTG  I+  R  I ++YR GRG    
Sbjct: 208 REIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRTGRGSIVQ 266

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310
           RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE+++    R
Sbjct: 267 RAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSDRAGTR 325

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P +++ +++  + ++  FP NM  L  G VP+ + LDG +  W+ H+  
Sbjct: 326 LVVVLK-RDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHYWVVHQVN 383

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +  +  ++   S+ E Q
Sbjct: 384 VIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLLSVDEVQ 443

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ E+   ++
Sbjct: 444 ADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAEIANKWA 503

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  R+T    V  A + +++  +I +E + V I+  G+         RS +     
Sbjct: 504 DE-----RKTAI--VPFAGEMSVED-LIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKG 555

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
           +     +E D ++    + + D IL  +  G     KAY +P G   S   H
Sbjct: 556 VKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQH 607


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 319/525 (60%), Gaps = 19/525 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 15  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPV  P+ +PNLL NG SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIV-GLTGIRDAYESGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 254 RATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRQHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 314 LVIEIKN-GFIPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++  FSL+E Q
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEHFSLSEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L  E +++  +L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLNGEIDELTGILESDAELRKLVSSELAAVAKKFG 491

Query: 488 KSTDLGRRRTTFCEV--SRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E   + A  A+LQ   +  +P  V++S+ G +
Sbjct: 492 TP-----RRTVLLESAGTPAPAASLQ---VADDPCRVLLSSTGLL 528


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 366/613 (59%), Gaps = 30/613 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   IV+TE P++  K+RL++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 309 VRIVL-FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K  + D  +  ++ ++  +D+++    NM  L+ G+ P+ + L  +L+ ++ 
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELERLINKLKKILNSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT+  E     K  +++ ++E++ + + +SN  + +  SLKS+   S 
Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVLTLSNESFAKRISLKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAF 606
           IDL  ++ I+ AF
Sbjct: 602 IDL--SETIIEAF 612


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 257/771 (33%), Positives = 416/771 (53%), Gaps = 54/771 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           E R+       L   D DA      VDF   ++    EP + P++ P+LL NG+SGIAVG
Sbjct: 198 ECRLDVGCFFFL---DIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVG 254

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ G
Sbjct: 255 MATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTG 313

Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDE
Sbjct: 314 RGRVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDE 373

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R  DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ +
Sbjct: 374 SDRSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAF 432

Query: 365 LAHRREVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
           +  R  V+ RR+ F++ QA++R+  I++G++I   N+D +I IIR   N    +  ++  
Sbjct: 433 IDFRCSVIERRARFKLSQALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE 491

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  
Sbjct: 492 FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEAT 551

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K  F+        R +F E S A        +I  E + +++S +G+++ +K ++ +L
Sbjct: 552 DLKNKFATP------RRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNL 604

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------GEAI 590
                      K+ ++ +T+D I+  + D   Y    G + S R +          G  +
Sbjct: 605 QNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPL 664

Query: 591 QLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLK 643
             L+ L+  + I     V  F  D    +L V    N +I  V  +   A    G   ++
Sbjct: 665 VQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGIISIQ 720

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           ++  +++K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G    + 
Sbjct: 721 LAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG--DKMA 778

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750
              I    +   +   +Y+R  +    WL      G+G  VP    R G F
Sbjct: 779 SMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 827


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/635 (35%), Positives = 364/635 (57%), Gaps = 51/635 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +S+   L+E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L     +KKSA
Sbjct: 27  VDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG++D D  AA RYTEARM
Sbjct: 87  ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEARM 146

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+GMAT++P HN+
Sbjct: 147 TKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPHNL 206

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A +  ID+ +  I+ L+ YI GPDFPT GII   +E I E+Y  G+G  ++RAR 
Sbjct: 207 KEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314
            +EE  +    IVV E+PY V K+ L EKIAEL+   +I  + DIRDES+    +R+++ 
Sbjct: 266 EIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLIIE 325

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +   +++  ++  +D+E  F + +N+  +   P+V+ L  ++K ++ HR EV+ +
Sbjct: 326 LK-KGVATQIVLNQLWKHTDLEITFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +     +  IL+GLLIA  NI+E+I IIR   N +  +  ++S+F L+E Q  AI
Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSKFKLSEKQAQAI 443

Query: 432 LNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           L++ L+ L  LE+ +I+ EL          ++LLA  EKI +++   K +   IA +  +
Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVI---KDELKNIAEKYGD 500

Query: 482 VK--EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +  EI  K+ D         E+   D       +I  E + V I+ +G+I+ + + S  
Sbjct: 501 DRRSEIIGKTND--------TEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYR 545

Query: 540 LSALHFKEGDSLKIA--------LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
                       K            A T D + + +  GKA+ +    +  L+    G++
Sbjct: 546 TQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKTSQGKS 605

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           I+ +++L  ++ I + F    ++    +++V+  G
Sbjct: 606 IKFILNLAPDEKITSYFTVSDFNPKQSIIMVTKMG 640


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 346/602 (57%), Gaps = 44/602 (7%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+  T + E     ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG  
Sbjct: 61  YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
                AA RYTE +M  +A  +++ +DE++VDF+D Y+ ++ EP + P++FPNLL NG+ 
Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRE 237
           GIAVGMAT IP HN++E+       +++P+ S E+LLE +I    GPDFPTG  I+  R 
Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATIL-GRR 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  
Sbjct: 240 GIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGG 298

Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + DIRDE++     R+V+  K R     +++ +++  + ++  FP NM  L  G VP+ +
Sbjct: 299 IADIRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            LDG ++ W+ H+ +V+ RRS FR++    R+ IL+G L A   +D +IA+IR     D+
Sbjct: 357 SLDGFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADE 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q DAIL L+LR L  LE  +I+ E + L A+   +  ++ S ++Q 
Sbjct: 417 ARGGLMGLLGVDEVQADAILALQLRRLAALERLKIQQEAEELQAKVADLKDIIASPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             ++ E+ E+ E +        RRT        D     + +I +E + V I+  G+ + 
Sbjct: 477 GIVSDELAEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEEVVVTITRSGYAKR 528

Query: 533 LKSHSVDLSALHFKEGDSLKIA----------LHAHTTDRILLLSTD------GKAYTLP 576
            ++   D      + G  +K A              TT   LL  T+       KAY LP
Sbjct: 529 TRT---DAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELP 585

Query: 577 AG 578
            G
Sbjct: 586 EG 587


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 246/712 (34%), Positives = 387/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  ++  R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVNFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+  + P   K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   +  S+
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653

Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           ++   +    GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 354/592 (59%), Gaps = 27/592 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +++ +L+YA+S I  RA+PD+RDG KPV RRI++ M+++GL     FKK+A
Sbjct: 28  VQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMNDLGLSNQERFKKAA 87

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VG V+G+ HPHGD S+Y+++VR+AQ F  RYPLI+G GNFG+IDGDSAAA RYTEARM
Sbjct: 88  AVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDGDSAAAMRYTEARM 147

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +++ ++++ VDF DTY+  + EP V P+ FPNLL NG++GIAVGMAT+IP HN 
Sbjct: 148 SKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGIAVGMATNIPPHNF 207

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A +A I+N  I  + L++Y+ GPDFPTGG I+ + E++   Y  G+G   +R++ 
Sbjct: 208 KEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEILGA-ENLKNIYNTGKGRIFIRSKT 266

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            + +  +    IV+TEIP+Q++KS LIE IA L   K I  + D+RDES  + +++V+  
Sbjct: 267 QIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDESNRQGIKLVIDL 326

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R ++P +++ +++  S ++  F  NM  L  G VP+++ L  +LKE+   R  V+ R+
Sbjct: 327 K-RDVNPHVVLNNLYKNSQVQVSFNFNMIALVKG-VPKLVNLKQMLKEFFDFRINVIQRQ 384

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
             F +    ++  ++K L+IA  +ID ++ +I++    K     ++ ++ L E Q   IL
Sbjct: 385 KQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEKYQLDELQSKVIL 444

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            + L+ +  LE  +IK E   L  +  +  +++NS   +   +  ++  +++ F      
Sbjct: 445 EMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKEQILKQDLLNLQKNFQD---- 500

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS-L 551
           GRR  T   +   D    + ++IEKE I + I+++G+I+ L   ++D      K G   +
Sbjct: 501 GRR--TVINMENQDLDIDKSSLIEKEKILITITHKGYIKRL---NLDTYKKQNKGGKGVI 555

Query: 552 KIALH----------AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            I ++            T D  L  +  GK Y +    + S   H + I L+
Sbjct: 556 GITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKGIPLV 607


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/617 (37%), Positives = 348/617 (56%), Gaps = 30/617 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++N  N+  L++     + +   +++ ++ Y++S I  RA+PD RDG KPVHRRII++M 
Sbjct: 1   MENTENTTNLIK-----IPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSME 55

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E  L  G   KK A IVG+V+GK HPHGD SVYD+LVRL Q F QRY ++   GNFG I 
Sbjct: 56  ENHLSAGGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIA 115

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEA+MT++AE +++ +++D VD    Y++   EP V PSKFP LL NG+ G
Sbjct: 116 GDPPAAYRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVG 175

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++P HN++E+  A  A IDN  I++++LL +I GPDFPTGGII   +  I ++
Sbjct: 176 IAVGMATNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIF-GKHGIADA 234

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   VR R+ +E    G   IV TE+PY V    L EKI EL   K I  +  I 
Sbjct: 235 YRTGRGKILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAIN 294

Query: 303 DESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES++   +RIV+  K R     +++  +F  + +++ F +    L  GR PQ++ L  I
Sbjct: 295 DESSDRSGMRIVIHLK-RGAITKVVINQLFAKTALQSSFGVINLALVKGR-PQILNLKQI 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVM 417
           +K ++ HR EV+ RR +F +     R  IL+ L+ A   IDE+I +I   R+E + K  +
Sbjct: 353 IKCFVDHRDEVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF   E Q +AI+ +RL  L  L   +++ E++ + A     + LL   ++    I  
Sbjct: 413 MQRFGFDEIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCEDLLAHHEKILAIIKD 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E  E+ E +      G  R T       +   ++  +I++E + ++IS  G+I+ +    
Sbjct: 473 ETNELSEKY------GDDRKTDIVAGEVESINVED-LIKEEDMVILISKLGYIKRVSVSQ 525

Query: 538 VDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHG 587
                   K        E D +     A T D ++ ++T+GKAY +    +   S    G
Sbjct: 526 YKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPEASKTSRG 585

Query: 588 EAIQLLIDLNHNQDIVT 604
             I+ L+ +N N+DI T
Sbjct: 586 SHIKSLLAVNANEDITT 602


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 355/630 (56%), Gaps = 33/630 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G      
Sbjct: 35  MVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 95  YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +     +  ++    
Sbjct: 391 GHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLMDLLD 450

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   +  E+   
Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDEL--- 507

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI SK  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 508 DEIVSKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 652


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/712 (34%), Positives = 389/712 (54%), Gaps = 63/712 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420
           R+ + +     R  IL GL IA  NIDEII II+   + +  K  +++R           
Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLV 424

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L 
Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        R+ K      S L  ++ D         T   +L  S  G+ Y+L   
Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L LS  +G G  +  ++ L  N+ I                 ++  ++KGN   +  S+
Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653

Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           ++   +    GK  +++  ++K+  V     D H+ +  +  K L F ++ +
Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/696 (33%), Positives = 390/696 (56%), Gaps = 41/696 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +     +D+PE + E+LLE ++    GPDFPT G+IV  R  I ++YR GRG  
Sbjct: 191 NLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIV-GRNGIEDAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE++  + 
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F +NM  +  G VP+ + LD ++  ++ H+
Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMISYYVEHQ 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTE 425
            +V+ RR+ ++++    R+ +L GLLIA  ++DE+IA+IRN +  +     +++RFSL+E
Sbjct: 367 VDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMARFSLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E   L A+ ++++++L S  +Q   I  E+ EV E 
Sbjct: 427 IQATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAILASPVRQREIIGQELAEVVEK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D +   + +I +E + V ++  G+         RS K   
Sbjct: 487 FGDE-----RRTRLVPFE-GDMSV--EDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     +E D ++      T   +L  +  G+ Y   A  L   +    G+ +  ++ 
Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650
            + ++ I        Y +   L++ + +G       ++  +N   G   + +  ++++  
Sbjct: 599 FSQDERIAEVMAIQDYQAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELIS 658

Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR 683
            +LV    GD + +V  N + + F  D  Q+  M R
Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGR 692


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 351/639 (54%), Gaps = 66/639 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E G  +   ++KS
Sbjct: 12  DISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAQESGFVYNRPYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD S+YD+L R+ Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 72  ARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D+D VDF+  Y+  ++EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 132 LAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A LA IDNP IS ++L++ + GPDFPT  +I+  +     +Y  GRG   +RAR
Sbjct: 192 LGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLIL-GQSGARSAYNTGRGSIIMRAR 250

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
             VEE GRG    IV+T IPYQV KS L+EKIAE    KR+  + DIRDES  E VRIV+
Sbjct: 251 HDVEE-GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIRDESNREGVRIVM 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++  ++  +  ++ FP NM  +  GR P+++ L  I++ ++  R EV+ 
Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PEILGLRDIIEAFIKFREEVIT 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ + +     R  IL GL++A  N+DE++ IIR    P   +  ++++          
Sbjct: 368 RRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAKEWPIGEIAPY 427

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L++ QV AIL+LRL  L  L   +I  EL  L     +  ++L
Sbjct: 428 LRLVEAIENDIDGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAELAEAITEYLAIL 487

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  +  E+  ++  F+             E++ A      + +IE+E + V ++
Sbjct: 488 ADRVKLYAVMREELEAIEREFATP--------RLSEITAAADGIEDEDLIEREDMVVTVT 539

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-- 575
            +G+I        R+        S +  K+ D++       T   +L  ST GK Y L  
Sbjct: 540 MQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599

Query: 576 -------------PAGNLLSGRGHGEAIQLLIDLNHNQD 601
                        P  NLL   G GE I  ++ L  +++
Sbjct: 600 WRLPEGGPATRGRPMVNLLP-LGPGETISTVLPLPEDEE 637


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/541 (39%), Positives = 325/541 (60%), Gaps = 19/541 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 15  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAVGMAT++P
Sbjct: 135 ECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P+  +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYENGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  + +  +R
Sbjct: 254 RATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 314 LVIEIKN-GFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RFSL+E Q
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIERFSLSEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDSELRKLVSAELAAVAKKFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RRT   E +    A +   + +  P  V++S+ G +    + + +  AL  +E
Sbjct: 492 TE-----RRTVLLESAGTPVAAVPLEVADT-PCRVLLSSTGLL----ARTANGEALPQEE 541

Query: 548 G 548
           G
Sbjct: 542 G 542


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 355/600 (59%), Gaps = 29/600 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+    LA IDN EI I++L+EYI GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----IAKRIPLLEDIRDESAED- 308
           A+  +E++  G   I +TE PY+  K++L++ I+E+      +K + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNG 309

Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++
Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+    K     ++ +F+
Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFA 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+
Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536
            + +        R+T   E     K  +++ +I +E + + +S  G+I+       ++S+
Sbjct: 488 SDKYG-----DERKTHIIEDDTKSKIDVEELIIVEE-VMITLSKEGFIKRIPVKNYIRSN 541

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
           S +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+  L  +  GE +  +I
Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQVKGINIPELKWKEKGERLDTII 600


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/559 (38%), Positives = 328/559 (58%), Gaps = 15/559 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA S I  RA+PD RDG KPVHRRI++ M EMGL       K AR+VG+V+GKLHPH
Sbjct: 33  YLEYAYSVIYSRALPDARDGLKPVHRRILYQMREMGLRSDRPHVKCARVVGDVMGKLHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVD 148
           GD ++YD+LVR+AQPF    PL+ G GNFG++ GD   AAYRYTE RMT  AE +   +D
Sbjct: 93  GDMAIYDALVRMAQPFAMWLPLVDGHGNFGSLGGDDPPAAYRYTECRMTAAAEAMTADLD 152

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED VDF   Y+ +++EPVV P+ FPNLL NG SGIAVGMAT++P HN+ E+  AA  L++
Sbjct: 153 EDVVDFAPNYDGQETEPVVLPAAFPNLLVNGASGIAVGMATNMPPHNLGEVVAAARYLLE 212

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP+ S+++L+ ++ GPD PTGG IV   + + E+Y  GRG FR+RA   +EEV      I
Sbjct: 213 NPQASLDELMRWVPGPDLPTGGEIV-GLDGVREAYATGRGSFRMRATARIEEVRGRRKGI 271

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326
           VVTE+PY V   R++ +I +L+ AK++  + D+RD  +    +R+V+  +    DP  ++
Sbjct: 272 VVTELPYGVGPERVVARIKDLVSAKKLAGIADVRDLTDRHHGLRVVIEVRQ-GFDPQAVL 330

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++ L+ +E  F +N   L  G+ P+ + L  +L+ ++ HR EV  RRS+FR +  + +
Sbjct: 331 DQLYKLTPLEESFAVNNVALVDGQ-PRTLGLADLLQVYVGHRIEVTRRRSAFRKKRREAQ 389

Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + I++G L A ++ID +IAIIR  D   + +  ++  F LTE Q + IL+L LR L K  
Sbjct: 390 LHIVEGRLRAIVDIDRVIAIIRASDDTAQARDALMETFGLTEVQANDILDLPLRRLTKFS 449

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++++E D L  +   +  +L S ++    ++ E+  V E F+        R T     
Sbjct: 450 KIELEAERDELRRDIASLGDILGSEQRLRAVVSAELAAVAEQFATP------RRTRLTAD 503

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                T +   I   P  VV+S  G +                  D++  A+   T   +
Sbjct: 504 DGSPVTSRPLEIPDSPCCVVLSATGLLARTTGPGFPSGDADRARHDAIADAVEVTTRGDV 563

Query: 564 LLLSTDGKAYTLPAGNLLS 582
            L+++ G+   LP  +L S
Sbjct: 564 GLITSQGRVLRLPVLDLPS 582


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 357/600 (59%), Gaps = 29/600 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++
Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++E++ RRS   ++   +R  I++G + A   +DE+IAIIR+    K     ++ +F+
Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEKFA 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+
Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536
            + +        R+T   E     K  +++ +I +E + + +S  G+I+       ++S+
Sbjct: 488 SDKYG-----DERKTNIIEDDAKSKIDIEELIIVEE-VMITLSKDGFIKRIPVKNYIRSN 541

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
           S +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+  L  +  GE +  +I
Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTII 600


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 359/611 (58%), Gaps = 34/611 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +++KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VRLAQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM Q++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N++E   A  A ID N  +S+E++++Y+  PDFPTGGII    + +  ++  G+G   +R
Sbjct: 185 NLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIY-GYDGVKNAFHTGKGRIVLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           A+   EE+ +G  CI+V EIPYQV KS +I +   L+   ++  +  IRDES  + +RIV
Sbjct: 244 AKVHFEEI-QGRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
              K  + +P++L+  +F  + ++T F +N   L  G+ P  + +  +++ ++ HR +V+
Sbjct: 303 YILKQNT-NPNILLNKLFQYTPLQTSFNVNNIALVNGK-PLQLNIKDMIQHFVDHRHDVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RRS + ++    RV IL G      ++D +I +I+   N       ++ +F ++E+Q  
Sbjct: 361 IRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKKFKISEDQSK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL++RL+SL  LE  ++K E D L+ + E   ++L     +   I  E+ ++K+ +  S
Sbjct: 421 SILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNVLVQHSVRTKIIKEELLDIKKKYQDS 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLS 541
                RRT   ++  +      + +IE E + + IS+ G+I+  SL  +       V   
Sbjct: 481 -----RRT---QIDYSGNKVHIEDLIENEQVVLTISHAGYIKRTSLSEYKRQGRGGVGNR 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDL 596
               +E D  K  L A     +L  +  GK      Y +P G+ +S    G AIQ +I L
Sbjct: 533 GATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGSKIS---KGRAIQNIIHL 589

Query: 597 NHNQDIVTAFV 607
             + D V A++
Sbjct: 590 QQD-DKVNAYI 599


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 356/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHFLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN    D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++  N D
Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  K+GD L   L       IL+ +  G A T  + N +   G   A    I+L  N
Sbjct: 640 LIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTF-SENDVRAMGRTAAGVRGINLREN 698

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
             +V + V  +  ++LV+S KG       +E     R GK     +  EK   +  VT  
Sbjct: 699 DYVVGSGVLGADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVTII 758

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              + V V+  +  ++ F I+ + +  R   GVRL    DG
Sbjct: 759 NSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDG 799


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 279/799 (34%), Positives = 435/799 (54%), Gaps = 88/799 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSARIV
Sbjct: 11  INIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+ AA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRYTEVRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A  A +D+ EI+IE L+++I GPDFPT GII   R  I+E+YR GRG  R+RAR  VE
Sbjct: 191 IDACFAFMDDSEITIEGLMKHIQGPDFPTYGII-NGRAGIIEAYRTGRGRIRIRARATVE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +   G   I+VTEIPYQ+ K+RLIE+IAEL+  K I  + ++RDES +++RIV+  + R
Sbjct: 250 RDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKNIRIVIEVR-R 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + D+++ +++  + ME+ F +NM  L  G+ P+++ L G+++ ++ HR+EV+ RR+ +
Sbjct: 309 GENADVVLNNLYSQTQMESVFGINMVALVDGQ-PRLLNLRGVIEAFVRHRQEVVTRRTVY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MVSR-- 420
            ++    R  IL+GL +A  NID +I +I++                +P  V  M+ R  
Sbjct: 368 ELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIAMLERAG 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L++ Q   IL +RL  L  LE  ++  E    L    +
Sbjct: 428 EAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEKLEIIRE 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           + ++L S ++    I  E+  ++E F+ +      R T    S+ D     + +I +E +
Sbjct: 488 LLAILASRERLMQVIRDELTAIREGFADA------RKTEIVASQLD--INDEDLIPEETV 539

Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +SN G+ ++  L  +          +A   KE D ++  L   T D IL  ++ GK 
Sbjct: 540 VVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKV 599

Query: 573 YTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIV 626
           + L    +  +GR   G  I  L+ L  N+ I TA +    YD    + + +S G    V
Sbjct: 600 FWLKVYQIPQAGRQAKGRPIVNLLSLGENEKI-TAILPLRGYDGDRFVFMATSNGTVKKV 658

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDH--VAVVGENRKLLIFSIDQIPEMSR 683
              E      +G   L++  EE  +LV V +T  H  + ++    K + F  +++  M R
Sbjct: 659 ALQEFSRPRSQGLIALEL--EENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAMGR 716

Query: 684 -GKGVR-LQSYKDGGI-------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             +GVR +   +D  +        D      CE     +  G+    SE    G    RG
Sbjct: 717 TARGVRGMNLPEDAAVIALIVPDPDAQILTACE-----NGFGKRTLVSEFPTKG----RG 767

Query: 735 GVGSLVPKGFPRSGKFLSS 753
           G G +  +   R+GK + +
Sbjct: 768 GKGMIAIRTSERNGKLMGA 786


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/631 (35%), Positives = 365/631 (57%), Gaps = 35/631 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        
Sbjct: 5   VFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +L  +++D V+F   ++E + EPVV PS++PNLL NG SGIAVGMAT+IP
Sbjct: 125 EARLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            HN++E+  A + +IDN      E ++E+L+E + GPDFPTG  I+  R +I ++YR GR
Sbjct: 185 PHNLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATIL-GRRAIEQAYRTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +VRA   +E +  G   I+V+E+PY V K+RLIEKIA+L+  K+I  +  I DES  
Sbjct: 244 SKIKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   +     R ++ ++++  +   + ++  F + M  L +   P+V+ L  +L  +L H
Sbjct: 304 EGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-VDSQPKVLNLHQMLDYYLKH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ + +   + R  IL+GLLIA  +IDE+I+IIR   N  + K ++  RF L+
Sbjct: 363 QEDVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFGLS 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI+++RLR+L  LE  +I++E   L A   ++ ++L   K+    I  EI  + +
Sbjct: 423 DAQAQAIVDMRLRALTGLEREKIENEYKELQARISELKAILADEKKLLTVIKDEITVIAD 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +        RRT    +   D  +++  +I  E   + +++ G+I        RS    
Sbjct: 483 KYGDD-----RRTA---IGYDDDMSMED-LIPDEDTVIAMTHLGYIKRMDVDNFRSQNRG 533

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594
              +  +   E D ++  L       ++  +  G+ Y L A  +  +GR   G AI  L+
Sbjct: 534 GKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAGRTARGTAIVNLL 593

Query: 595 DLNHNQDIVTAFV----YDSTCKLLVVSSKG 621
            L   + I TA +    Y+   K L +++KG
Sbjct: 594 QLQPEEKI-TAIIPMREYNED-KYLFMATKG 622


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/737 (33%), Positives = 389/737 (52%), Gaps = 40/737 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KSA  VG V+G 
Sbjct: 24  IETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGAVLGS 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A  +L 
Sbjct: 84  YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D +++   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 144 DIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCVA 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I++P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE   G 
Sbjct: 204 YIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPY V K+RLIE +AEL+  KRI  +  + DE+      ++    +  +  ++
Sbjct: 263 TQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + ++    
Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKAKE 381

Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L  L  
Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL  L A+ E  + +L +  +    +  E+ ++K+ F        RRT   E
Sbjct: 442 LEILKIEEELSGLQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDE-----RRT---E 493

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553
           +         + +I +E     ++  G+I+        + K     +S +  KE D ++ 
Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQE 553

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                T D +L ++  G     K YT+  G+  S    G  I  L+ L   + +     Y
Sbjct: 554 MFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTS---KGSNIINLLQLAEGEKVTNMLCY 610

Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAV 663
               D+    + + +K         E  AN RK G   + ++  + +      TG+ + +
Sbjct: 611 PKDEDNKGGFVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLI 670

Query: 664 VG-ENRKLLIFS-IDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN 720
           V   N + + F+  D  P    G GVR     +G   +V+   IC EG T +        
Sbjct: 671 VATRNGQAIRFNEADARPMGRSGHGVRAIKLAEG--DEVVGVCICREGGTVLTVTENGKG 728

Query: 721 RSENDLLGWLGKRGGVG 737
           R  +     +  RGG G
Sbjct: 729 RRSDIDTYRITARGGKG 745


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 319/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M EMGL     F 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMGEMGLRPDRGFV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD++VR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAVGMAT++P
Sbjct: 136 ESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIV-GLSGIKDAYESGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 255 RATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVKDLTDRNHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  ++ RFSL+E Q
Sbjct: 373 VVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLMERFSLSEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  ++++E + L  E +++  +L S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKFDRIELETEQNRLNGEIDELTGILESDAELRKLVSAELAAVAKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +TD   RRT   E + A  A +    +  +P  V++S+ G +
Sbjct: 492 -ATD---RRTVLLESAGAPVAAVSLE-VADDPCRVLLSSTGLL 529


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/686 (35%), Positives = 374/686 (54%), Gaps = 37/686 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E  +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+     + +L+ +D + VDF D ++    EP+V PS+ P L  NG+SGIAVGMAT
Sbjct: 122 YTECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L+++I GPDFPTG  I+  +  I ++Y LGRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQIL-GKSGIRDAYTLGRGS 240

Query: 250 FRVRARWCVEEV---GR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I+VTE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 ITMRGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R   P +++ +++  + ++  F  N+  L +   PQ++ L   L+ +L
Sbjct: 301 DRNGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLAL-VNSEPQLLTLKKYLEVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+DEII +IRN  D P  K  ++  + 
Sbjct: 360 EFRVETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + LL +   +  +L   K++      E   +
Sbjct: 420 LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADLQDIL--AKRERILEIIETEAI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           +     +T    RRT    +  A+       +I  E   ++++ +G+I+ +  +S +   
Sbjct: 478 EIKERHATP---RRTV---IELAEGELDDTDLIANEKAIILLTEQGYIKRMPVNSFEAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                 S    KE D ++  L  +  D IL  S  G  Y L A  +  G     G  I  
Sbjct: 532 RATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQ 591

Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
           ++ +  ++ +     V+ F  D   K LV+ +KG           AN R  G   + +  
Sbjct: 592 MLPIPRDEKVTSIVAVSEFTDD---KYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGE 648

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI 672
            + ++ V +   D   ++G +  + I
Sbjct: 649 GDSLRWVRRAKVDDSLIIGSSYGMAI 674


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/630 (36%), Positives = 355/630 (56%), Gaps = 69/630 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420
           FR++       I +G  +A  NIDE+I +I+ + D P+                 M+SR 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A  
Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494

Query: 459 EKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            KI   L+  +  ++  QI   IRE  E+    T+ G  R +       D A   + +I 
Sbjct: 495 -KIIDFLDILAKPERITQI---IRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIP 546

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +++ G+I++  +              A   K+ D ++    A+T D ++  + 
Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606

Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592
            GK      Y LP G   S GR     IQL
Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/729 (34%), Positives = 385/729 (52%), Gaps = 76/729 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  VSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ EI
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLGEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LAL++N E++I++L++ + GPDFPT GII      + E YR GRG   +R R   E
Sbjct: 191 IDACLALLNNAEVTIDELIDLVPGPDFPTAGIIY-GVAGVREGYRTGRGRVVMRGRTHFE 249

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +G+    I++ E+PYQV K  L+EKI EL+  KRI  + D+RDES +    V+    
Sbjct: 250 DMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  ++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREVL RR+ 
Sbjct: 310 RGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLRHRREVLTRRTV 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413
           F ++    R  I +GL +A  N+DEIIA+I+    P                        
Sbjct: 369 FELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQRA 428

Query: 414 -----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                +P        +  S + L+E Q  AIL LRL+ L  LE  +I ++   LLA    
Sbjct: 429 ALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIAD 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  ++  F      G +R +   +S  D     +  I    +
Sbjct: 489 LMDILARPERITEMIVEELTAIRAQF------GDKRRSEIVISTQDLGI--EDFITPVDM 540

Query: 521 TVVISNRGWIRS--LKSHSVDLSALHFKEGDSLKI------ALHAHTTDRILLLSTDG-- 570
            V +S+ G+I+S  L  +         K+  ++K          A+T D IL  +  G  
Sbjct: 541 VVTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRV 600

Query: 571 ---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGN 622
              K Y +P G   S    G+ I  L      + I     V  F  D    + + +++G 
Sbjct: 601 YWLKVYEVPQGTRTS---RGKPIVNLFPFEEGEKISAILPVKEFTDDRY--IFMCTAQGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE 680
                 S+  +N RK         +E + +  ++T     V +V +  K + F  + +  
Sbjct: 656 VKKTPLSD-FSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRP 714

Query: 681 MSR-GKGVR 688
           M R  +GVR
Sbjct: 715 MGRTARGVR 723


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 255/729 (34%), Positives = 384/729 (52%), Gaps = 65/729 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    ++ K 
Sbjct: 30  DIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD SVY +LVR+AQPF     LI GQGNFG++DGD  A+ RYTEAR
Sbjct: 90  ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEAR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP HN
Sbjct: 150 MAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+D+PE+S + LL+ + GPDFPTGG I+  R +   + R GRG   VR  
Sbjct: 210 LGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEIL-GRTAPRNALRDGRGSVVVRGV 268

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             VE + +    IVVTE+P+QV K  LIE+IAE++  KR+  + D+RDES    +RIV+ 
Sbjct: 269 ASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIE 328

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++  ++  + M++ F +NM  L+ GR P+ M L  +L+ +L  R EV+ R
Sbjct: 329 LK-RDASGDVILNQLWRYTAMQSSFGVNMLALNHGR-PEQMGLRKLLEVFLDFREEVVVR 386

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV--MVS-- 419
           R  F +     R  +L GL +A  NIDE+I IIR+   P            PV  M++  
Sbjct: 387 RVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALV 446

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            LT+ Q  AIL L L  L  L    I  E   L    +   ++L
Sbjct: 447 ELIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTIL 506

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +  K     I  ++ +V+  F+       RRT   E    D     + +I +E + V ++
Sbjct: 507 SDRKNILAIIREDLLDVRNQFAVP-----RRTLIGE---GDFELEDEDLIPREDMVVTVT 558

Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+++ +  ++           S +  K+ D++     A T   +L  +T+GKAY L  
Sbjct: 559 HGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKV 618

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIVEES 629
             L  G     G+A   L+ +     I  V     D T      ++  +  G+    + S
Sbjct: 619 WRLPLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLS 678

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG---- 684
           +     R GK  +K+   + M  V   T  D V +     + + F  D +  + +G    
Sbjct: 679 DFATVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDV-RVFKGRDST 737

Query: 685 --KGVRLQS 691
             +GVRLQ 
Sbjct: 738 GVRGVRLQG 746


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 306/522 (58%), Gaps = 45/522 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA S I  RA+PD+RDG KPVHRR+++A + +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +   ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVG AT+IP HN+
Sbjct: 128 AKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +N   L  G+ P++  L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQ-PKIXNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420
           + F ++    R  IL+ L +A  NID II +IR+   P   K  +V+             
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            ++  +L S  +    I  E+  V+E F       +RRT   
Sbjct: 486 AELLRILGSADRLXEVIREELELVREQFGD-----KRRTEIT 522


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/695 (35%), Positives = 390/695 (56%), Gaps = 44/695 (6%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y+AYALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +KK AR+VGEV+GK H
Sbjct: 112 ESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE R+  +AE ++L  
Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ +   AL
Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NPE ++++LLEY+  PDFPTGGII+     ++++YR GRG   VR +  VE +   + 
Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350

Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +   V+    R  DP L
Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  V+ RR+ F++    
Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R   ++G+++   N+DE+I +I+N          + S + L+E Q +AIL + LR L  
Sbjct: 470 QRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSEYGLSEKQAEAILEITLRRLTT 529

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E  +L  +  K++ LL++       I  E  E+K+ FS       RR+   +
Sbjct: 530 LERKKVTDESSSLTEQITKLEQLLSTRANILKLIEQEAIELKDRFSSP-----RRSMLED 584

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
               D   +   +I  E + + IS +G+++ +K+ + +L        S    +  D++  
Sbjct: 585 SDSGDLEDID--VIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603
            L  H  D +L  S  G     +AY +P     S    G  +  ++ ++  + +     V
Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660
           + F  D    +L V    N  I + S ++ +  R  G   ++++S +++K V   + D  
Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
           VA+  +N  +++ + D +  +SR  KGV     K+
Sbjct: 756 VAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKN 790


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/758 (32%), Positives = 391/758 (51%), Gaps = 64/758 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  +S+   +++ YL YA+S I  RAIPD RDG KPVHRRI+ +M E G       +
Sbjct: 23  EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+ID D  AA RYTE
Sbjct: 83  KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   AE +L  +D+D VDF +TY+ E  EP V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + LID P +S E+LL  + GPDFPTG  I+  +    ++   GRG   +R
Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIM-GQSGARQALLTGRGSVVMR 261

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           A   VEEV +  + I+V++IP+QV K+ ++E+IA L+  K++  + D+RDES    +R+V
Sbjct: 262 ATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVV 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R  + ++++ +++  S ++T F  N+  L+ GR P+ M L  +LK ++  R EV+
Sbjct: 322 IELK-RDANAEVVLNNLYKQSPLQTSFAYNLLALNRGR-PEQMTLRTVLKSFVDFREEVV 379

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------- 420
            RR+   +     R  +L GL I+  NIDE++ +IR    P   +  ++ R         
Sbjct: 380 TRRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLAS 439

Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                              L+E Q  AIL+LRL+ L  L   +I  EL +L  +      
Sbjct: 440 LVALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQ 499

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    +    I  E+ +V+E F+       R+T F +    +     + +I +E + V 
Sbjct: 500 ILRDRDRVLTIIKDELADVRERFATP-----RKTQFIDAIEME----DEDLIAREDMVVT 550

Query: 524 ISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +S+ G+++  SL ++          S +  K+ D +      +T   +L  +  G AY L
Sbjct: 551 VSHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKL 610

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627
               L  G     G+A   L+ L+  + +             +   ++  +  GN    +
Sbjct: 611 KLWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNK 670

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQI----PEMS 682
            S+     + GK  +K+   + +  V +    + + +   N   + F +D +       S
Sbjct: 671 LSDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTS 730

Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            G +G+R +   + G   V+   I   L       ++Y
Sbjct: 731 TGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAY 768


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 333/583 (57%), Gaps = 26/583 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TFPQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+ T     +L+ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++  +L + I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQIL-GRSGIRDAYTSGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR    CI+VTE+PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGE-PQLLTLKQFLTVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D +I +IR   +    +  ++ +F 
Sbjct: 360 EFRVETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E   L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K I +       RRT   E+   +   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTIHATP-----RRT---EIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFGAQS 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                 +A   KE D ++  L     D +L  S  G  YTLPA
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPA 574


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 346/591 (58%), Gaps = 32/591 (5%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+++ L E+N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  RE I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GREGIRETF 245

Query: 244 RLGRGGFRVRARWCVEE---VGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + G+G   +R    +E+   +GR     +++TE+P+Q  K+ LIE+IA+L+  K++  + 
Sbjct: 246 KTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRDES  D +RIV+  K  S  P +++ ++F L+ ++  F  N+  L  G  P  + L 
Sbjct: 306 DIRDESDRDGMRIVIELKRDSY-PQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+       + 
Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++ +  I
Sbjct: 424 KLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEII 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534
             E+ ++   FS       R+T   ++    D   L    I  +   V+++  G+++ + 
Sbjct: 484 LEELNQIDGKFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534

Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  + ++           KE D +K+ +  +  D +LL S  G AY LPA
Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPA 585


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/710 (33%), Positives = 392/710 (55%), Gaps = 41/710 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E +  V L     + Y++YA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 92  VKERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 151

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY+SLVR+AQ F  RYPL+ G GNFG++D D  AA RYT
Sbjct: 152 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 211

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +AE + L  ++ + VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+I
Sbjct: 212 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 271

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    +I NPE ++++LLE + GPDFPTGG I+   + I+E+Y+ GRG   
Sbjct: 272 PPHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTIL-GNQGILEAYKSGRGRIV 330

Query: 252 VRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  +E +   S    I++ EIPYQ  K+ L++KIAEL   K +  + DIRDES    
Sbjct: 331 VRGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTG 390

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    RS DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ +L  R 
Sbjct: 391 MRVVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFLDFRC 449

Query: 370 EVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            V+ RR+ +++ QA++R+  I++G++I   N+D +I +IR   N       +V  F L+E
Sbjct: 450 SVIERRARYKLSQALERK-HIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKEFDLSE 508

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +A+L++ L+ L  LE  +   E   L  E  K++ LL+S +  +  I  E  ++K  
Sbjct: 509 KQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLSSKELIFQLIQQEAADLKNK 568

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540
           FS         +  CEV   D    ++ +++      ++S +G+ + +  ++  L     
Sbjct: 569 FSTPRRSLIDDSVSCEVDDIDIIPNEEMLLK------ILSEKGYAKRMNPNTFSLQHRGT 622

Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
              S    +  DS    +   T D +L  S  G     +AY +P     +    G  +  
Sbjct: 623 IGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPE---CTRTATGTPLVQ 679

Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+ L+  + I     V+ F  D    +L V+       +     I +T  G   +++   
Sbjct: 680 LLPLSDGERITSIIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRST--GIISIQLVPG 737

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +++K V +   D  VA+  +  ++++ S D++  + R  +GV     K+G
Sbjct: 738 DELKWVRRCGNDDLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEG 787


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 341/577 (59%), Gaps = 26/577 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 8   DKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 68  CARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   + +D VDF   ++E + EP + PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 128 RLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E  +  + +IDN      +  I++LLE + GPDFPTG  I+  R+ I ++YR GRG 
Sbjct: 188 NLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAIL-GRKGIDQAYRTGRGK 246

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  KRI  + ++RDES    
Sbjct: 247 IKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDESDRSG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     + ++ ++L++ +F  + ++  F + M  L +   P+V+ L  +L  +L H++
Sbjct: 307 MRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLAL-VDNQPKVLNLKEMLVHYLNHQK 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  IL+GLL A   IDE+I IIR   N  + +  ++ RF  ++ 
Sbjct: 366 DVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKRFEFSQA 425

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E D L  +  +++++L   K     I  EI  +++ +
Sbjct: 426 QAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAILADEKVLLGVIREEILLIRDKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD---- 539
                 G  R T  E+   D +   +A+I ++   +  S  G+I+ +     HS +    
Sbjct: 486 ------GDDRRTSIEMDMEDLS--DEALIPRKDAIITFSKLGYIKRMTPDNFHSQNRGGK 537

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++  + D ++      T + I+  +  G+ Y L
Sbjct: 538 GIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRL 574


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/711 (34%), Positives = 372/711 (52%), Gaps = 103/711 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E G      ++KS
Sbjct: 12  DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHESGFTHNKPYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 72  ARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 132 LAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A LA I+NP I+I++L++ + GPDFPT  +I+  +     +Y  GRG   +R+R
Sbjct: 192 LGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYHTGRGSIMMRSR 250

Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
             +EE GRG    IV+T IPYQV K+ L+EKIAE    KRI  + DIRDES  E VRIV+
Sbjct: 251 HKIEE-GRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDESNREGVRIVM 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++  ++  +  ++ FP NM  +  GR P+++ +  I++ ++  R EV+ 
Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PELLNIRDIIEAFVRFREEVIT 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ + +     R  IL GL+IA  N+DE++ IIR    P   +  +++R          
Sbjct: 368 RRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARDWPVAEIAPY 427

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L++ QV AIL+LRL  L  L   +I SEL  L A   +  ++L
Sbjct: 428 LKLVEAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAELAAAIAEYLAIL 487

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  +  E   ++  F+             E++ A      + +IE+E + V ++
Sbjct: 488 GDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIEDEDLIEREEMVVTVT 539

Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-- 575
            +G+I+     S           S +  K+ D++       T   +L  ST GK Y L  
Sbjct: 540 VQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599

Query: 576 -------------PAGNLLSGRGHGEAIQLLIDLNHNQD--------------------- 601
                        P  NLL   G GE IQ ++ L  ++D                     
Sbjct: 600 WRLPEGGPATRGRPMVNLLP-LGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRNSM 658

Query: 602 -----------IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                      I   F  DS  +L+     G A + EE +++  TR+GK  
Sbjct: 659 DAFANVPSNGKIAMRFDDDSDDRLI-----GVALLTEEDDVLLATRQGKAI 704


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/762 (32%), Positives = 418/762 (54%), Gaps = 44/762 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   S+   ++  Y+ YA+S I  RA+PD RDG KP  RRI++AM  +        KK
Sbjct: 3   ENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEVIGK HPHGD + Y++LVR+AQ F   + L+ GQGN G++DGD  AA RYTE 
Sbjct: 63  SARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEV 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE +L  +D+++V F   ++  ++EPVV PSK PNL+ NG+SGIAVG+AT+I  H
Sbjct: 123 RLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+C A  A +DN EI+ ++LL Y+ GPDFPTGGI+      ++ESY  GRG   +RA
Sbjct: 183 NLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGR-LIESYIKGRGSVTIRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
           R  +E+  RG   IV+ EIPY V K+ LIEKI  L+  + I  + D+RDES  + +RI +
Sbjct: 242 RVSIEKEKRGER-IVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISI 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K  + +PD ++ +++  + ++   P+ MNV  +G     + +  ++K ++ HR  V+ 
Sbjct: 301 ELKANT-NPDYVLNALYKHTQLQITMPV-MNVAVLGNRLLNLNIRDMIKIFVEHRFGVVI 358

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+++ ++  ++R  I+ GL+IA  +ID ++AIIR   N    K  +++++ +TE Q  A
Sbjct: 359 NRTNYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYGITEAQAAA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE   +K+E + L       +S+L S ++ +  I  E +E+ E +    
Sbjct: 419 ILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKEKVYQIIKDETKEIAEKYGIDR 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
                 +   E+   D       +I+ E   ++++  G+++ L              + +
Sbjct: 479 RTAIETSELVEIENED-------LIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVIS 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDL 596
           +  KEGD +K  +   T D +L++++ G     K Y +P G    GR   G+A   LI +
Sbjct: 532 IDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEG----GRYAQGKAAVNLISI 587

Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE-KMKLV 653
              + I       D + K L+ +++       ++E+ +  R  G   +K++ ++  + + 
Sbjct: 588 AEGERIEQIINTRDFSGKNLIFATRRGRIKSTKAELFSRPRANGIRAIKLNEDDIVVGVC 647

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGL 709
           +   G +V +   N K + F    +  M R     +G+RL+   +  + DV+     + +
Sbjct: 648 LSTGGSNVFLATRNGKAIRFMESDLRHMGRVASGVRGIRLKPNDE--LVDVVVADPKKNI 705

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             I    R Y ++       L +RGG G +  K   ++GK +
Sbjct: 706 ITITE--RGYGKATLLERYRLQRRGGGGVINLKVTEKTGKVV 745


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/697 (32%), Positives = 399/697 (57%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++Y+ GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLGEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGII-QGLDGIKKAYESGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  ++ H+ EV+  
Sbjct: 302 ELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISDGR-PKLMGIKQIIDSYINHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ F  TE Q +AI
Sbjct: 361 RTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E D L    + +  +L+      N I  E+ E+++ F   TD
Sbjct: 421 VMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELTEIRKKF--KTD 478

Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     K
Sbjct: 479 --RLSTIEAEISEIKIDK----EVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL   L  +T D  L+ +  G+   +P   L   R    G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
            F    ++      +++++              TR  K    +KV  ++++  +++V  D
Sbjct: 593 VFNEKDFNQREAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKVKEQDEVINIMRVESD 652

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 653 QLITVVTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 689


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 353/628 (56%), Gaps = 50/628 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+ Q F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R +
Sbjct: 188 LGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++ VRI + 
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  
Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTNFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414
           R+ + +     R  IL GL IA  NIDEII II+  +                       
Sbjct: 365 RTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLI 424

Query: 415 -----PVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                 VM++   + S TE Q  AIL ++L+ L  +E+ +++ +L +L  E  +  ++L+
Sbjct: 425 KLVDDKVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILD 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++ 
Sbjct: 485 SRTRLLEILKEELIKVKEEFAVP------RLTAIEFGEFDQDI--EDLIQREEMVVTVTL 536

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I        RS K      S L  ++ D         T   +L  S  GK Y+L   
Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLY 596

Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVT 604
            L LS  +G G  +  ++ L  N+ I  
Sbjct: 597 KLPLSNPQGKGRPMVNILPLQENEHITN 624


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/735 (32%), Positives = 411/735 (55%), Gaps = 43/735 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI+ +  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           R++  +E++      I+VTEIPY+V KS L+++I  L I K++  + ++RDES  E +R+
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRV 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K ++ +   ++  +F  +D++  +  NM  ++  R P+ + L  IL+ +L H+REV
Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
             RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q 
Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +  
Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545
               G  R T  +   +      + M+ +E + +++S+ G+++  SL+S ++ D      
Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           K+ D   +    +T   + + +  G     P   ++  R    GE +   + L +++ I+
Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYIL 593

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            AFV+   D   K L+ + +G    V+    +A+ + G+T+ K  +   +KL   V  D 
Sbjct: 594 NAFVFENIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYIKLKTDV--DE 646

Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
           V  V   E+ K  +F           S+D++P       GV+    +D  +++VI     
Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLKYSLDEVPTNGVLAAGVKCMDLRDDTLANVILVSES 706

Query: 707 EGLTWIDSAGRSYNR 721
           + ++ I   G SY +
Sbjct: 707 DEVSIITQRG-SYKK 720


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 251/720 (34%), Positives = 386/720 (53%), Gaps = 65/720 (9%)

Query: 22  LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           LR  +EE     Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G      +KK AR
Sbjct: 13  LRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCAR 72

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS AA RYTE R++
Sbjct: 73  VVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRLS 132

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAVGMAT++P+HN+ 
Sbjct: 133 KMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNLS 192

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ E   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  GRG   +RA+  
Sbjct: 193 EVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYETGRGRIVMRAKAE 251

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPK 316
           +E  G     IVVTEIPY V K  LIE IA+L+   RI  + +  DES  + +RIV+  K
Sbjct: 252 IES-GESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR +V  RR+
Sbjct: 311 -RDANANVILNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRHDVTIRRT 368

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF+L E Q  AI++
Sbjct: 369 KYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFNLDELQSKAIVD 428

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  L   Q+ +E + L  +   +  +L+  +     +  E+ EVKE +       
Sbjct: 429 MRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDPELCKKVMKDELNEVKEKYGDE---- 484

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   E+  + +    +     +P+ + +S+ G+I        R      V   A   
Sbjct: 485 -RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGVGAKAARH 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIV 603
           +E D  +    A     +L  +  G+ Y L    +  G     G AIQ ++++  + D +
Sbjct: 541 REQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQNMLNI-ESDDAI 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK---VT 657
            A +  +T   L   S  N+  V     I  T+ G   KT L+  S  +   V+    V 
Sbjct: 600 NAILRLTT---LTDESFNNSHYV-----IFATKNGTVKKTSLEAYSRPRANGVIAINIVD 651

Query: 658 GDHVAVV------------GENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
           GD V  V              N + + F+ + I  M R     +G+RL    DGG  +V+
Sbjct: 652 GDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRL----DGGDDEVV 707


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/630 (36%), Positives = 355/630 (56%), Gaps = 69/630 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420
           FR++       I +G  +A  NIDE+I +I+ + D P+                 M+SR 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A  
Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494

Query: 459 EKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            KI   L+  +  ++  QI   IRE  E+    T+ G  R +       D A   + +I 
Sbjct: 495 -KIIDFLDILAKPERITQI---IRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIP 546

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +++ G+I++  +              A   K+ D ++    A+T D ++  + 
Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606

Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592
            GK      Y LP G   S GR     IQL
Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 365/640 (57%), Gaps = 37/640 (5%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+++ L E+N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I NP +   +L E I GPDFPTGG I+  R+ I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQIL-GRDGIKETF 245

Query: 244 RLGRGGFRVRARWCVEEVGRGSW----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + GRG   +R    +E++   S      +++TE+P+Q  K+ LIE+IA+L+  K++  + 
Sbjct: 246 KTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRDES  D +RIV+  K R   P +++ ++F L+ ++  F  N+  L  G  P  + L 
Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L  +L  R E + RR+ F ++  + R  I+ GLL+A   +DEII +IR+       + 
Sbjct: 364 KMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVSARE 423

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            + +   L+  Q +AIL ++LR L  LE  +IK E D L  +      +LNS ++ +  I
Sbjct: 424 NLQADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKINLYKQILNSKERIFEII 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534
             E+ ++ E FS       R+T   ++    D   L    I  +   V+++  G+++ + 
Sbjct: 484 LEELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534

Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR- 584
            +  + ++           +E D +K+ +  +  D +LL S  G +Y LPA  + +S R 
Sbjct: 535 VNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRT 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             G     L+ +   + I +      +D+ C LL+++  G
Sbjct: 595 AKGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKAG 634


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 410/714 (57%), Gaps = 41/714 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN    SL   + ER+  YA   I++RA+PD+RDG KPV RRI+ AM+E+ L F  ++K
Sbjct: 6   KENELVYSLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELRLTFNTSYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD SVYD++VRL+Q +  RYPLI   GN G+IDGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDPAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+++++  +LQ +D+  V F   +++ + EPVV P+ FPNLL NG++GIA G AT+IP 
Sbjct: 126 TRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAAGYATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI  A +  I+ P+ +++ L++Y+ GPDFPTGGII + +  I+E+Y+ G+G   VR
Sbjct: 186 HNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGII-QGKSGILEAYQTGKGKIIVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312
           ++   E     +  +V+TEIPY+V K  L++KI ++   +    ++++RDE+  E +RIV
Sbjct: 245 SKIKFE-----NNALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDETDREGLRIV 299

Query: 313 LFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRR 369
           +      L     +E++  F+L +   +   N N++++  + P+ + L  IL  ++ H++
Sbjct: 300 I-----ELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQPRQLGLKEILTHYVEHQQ 354

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTEN 426
           EV+   S F +    +R EI+ GL+     +DE+IA+IR ++D+   +  +V +F  T+ 
Sbjct: 355 EVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKKFGFTQI 414

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ LRL  L   +  Q+K+E   L+A   ++ ++L    +  + I  ++  +K+ F
Sbjct: 415 QAEAIVQLRLYRLTSTDILQLKAEQKELIATIAELKAILRDINKLNSVIIHQLELIKKKF 474

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHF 545
           +      RRR+       A +    + +IEK+ + + IS  G++++L+++ +  L    F
Sbjct: 475 A-----SRRRSVIENEIEAIEIQKTETIIEKD-LNIWISRDGYLKALENNQLARLVNEEF 528

Query: 546 KE--GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
           K   GD       A+T+D+ILL+++ G    +P   + + R    GE I  + +L   + 
Sbjct: 529 KRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELPGEEK 588

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVT 657
           I++AF+   ++   + +++++K         +    TR  K    ++ +   ++V  ++ 
Sbjct: 589 IISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEATRISKALKAINLKNDDEVVASQLV 648

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD--VICFKICE 707
           G H  V +   N  ++ +   QIP +    G+R    K   + D  VI    CE
Sbjct: 649 GHHPYVVITTANGFIVKYHKKQIPTL----GLRTAGVKSINLRDDVVINAGYCE 698


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 345/609 (56%), Gaps = 59/609 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   + K AR+V
Sbjct: 11  ISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPYVKCARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTECRLDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +D+D VDF   Y+ ++ EP V P++ PNLL NG SGIAVGMAT+IP HN+ E+
Sbjct: 131 ANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATNIPPHNITEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            + AL ++ N + +I++L+E I  PDFPT GII      + + YR GRG   +RA+   E
Sbjct: 191 IDGALHVLRNADCTIDELIEIIPAPDFPTAGIIY-GVSGVRDGYRTGRGRIVMRAKTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E G+ S   I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ F
Sbjct: 310 AEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLQCFLSHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407
            ++    R  +L+GL +A  NID+ IAII                               
Sbjct: 369 ELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVREMLVRTG 428

Query: 408 ----------RNEDKPKPVMVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                     R E+ PK   +     + L+++Q   IL +RL+ L  LE+ +I +E   +
Sbjct: 429 EEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKEV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A+   +  +L+  ++    I  E+   K  +       RR  ++ E +  D  T  + +
Sbjct: 489 MAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERR--SYIEHNATDLGT--EDL 544

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I  + + V +S+ G++        RS K       A+  K+ D +     A+T D IL  
Sbjct: 545 ITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCF 604

Query: 567 STDGKAYTL 575
           S  G+ Y L
Sbjct: 605 SNRGRLYWL 613


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/613 (36%), Positives = 349/613 (56%), Gaps = 32/613 (5%)

Query: 13  VEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +EENV    + V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+    
Sbjct: 1   MEENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA
Sbjct: 61  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMA
Sbjct: 121 MRYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           T+IP HN++EI  A + +IDN      E +I++LL  + GPDFPTG  I+ +R  I E+Y
Sbjct: 181 TNIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D
Sbjct: 240 RTGRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S  +   +     R  + ++++  ++  + M+  F + M  L +G  P+VM L  +L+ 
Sbjct: 300 HSNREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLAL-VGNTPKVMSLLEMLEH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +LAH+ EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+     + K  ++  
Sbjct: 359 YLAHQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDT 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  +E Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+      N +   IR
Sbjct: 419 FGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSD----RNLLLRVIR 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RS 532
           +  EI + +   G  R T       D +   + +I KE   + ++  G+I        RS
Sbjct: 475 Q--EILAIAEKYGDDRRTAIGYDEFDIS--MEDLIPKENTVIAMTKLGYIKRMTVDNFRS 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590
                  +  +   + D ++  L   T   ++  ++ G+ Y + A  +   S    G AI
Sbjct: 531 QNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAI 590

Query: 591 QLLIDLNHNQDIV 603
             L+ L   + I 
Sbjct: 591 INLLQLQPEEKIT 603


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/453 (44%), Positives = 286/453 (63%), Gaps = 40/453 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR++ AM  +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  IL  +D++ VDF   Y+ 
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+  A LALIDN E++ E++LE+
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT GII   R  I E+YR GRG  ++RAR  ++     G   I+V E+PYQV K
Sbjct: 182 IPGPDFPTAGII-SGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNK 240

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEK+AEL+  KR+  +  +RDES +D   ++    R    ++++ +++ L+ M+  F
Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            LNM  L+ G+ P++  +  +L+ ++ HRREV+ RR+ F ++    R  IL+GL IA  N
Sbjct: 301 GLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALAN 359

Query: 400 IDEIIAIIRNEDKPKPV----------------MVSR---------------------FS 422
           ID II +I+N +  K                  M+S                      + 
Sbjct: 360 IDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYY 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           LT  Q  AI++L+L  L  +E  +I SE   LL
Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALL 452


>gi|315452542|ref|YP_004072812.1| DNA gyrase, subunit A [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/708 (35%), Positives = 403/708 (56%), Gaps = 43/708 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  ++ + +  +L+E YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 1   MQPKIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   +E +L+ +D+D +DF   Y+    EP + PS+ PNLL NG+SGIAVGMATSIP
Sbjct: 121 EARMAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H   EI +A + +++NP+  +  L+E + GPDFPTGG +V  +  I+E+Y  GRG  +V
Sbjct: 181 PHRPDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGG-VVYGKAGILEAYTTGRGRIKV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RA+  VE+       I++ EIPYQV K++L+E+I+ L   K +  + ++RDES  E VR+
Sbjct: 240 RAKSRVEK-HNNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRV 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K  +   ++++  ++  S+ME  F + +  +   + P+V  L  +LK +L HR+ V
Sbjct: 299 VIELKKDAYS-EIVLNHLYKSSNMEITFSIILLAI-YNKEPRVFNLLELLKLFLVHRKSV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+   ++    R  IL+GL +A  + + +IA+I+   +    K +++    L+E Q 
Sbjct: 357 VIRRTIHELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQTHHLSEEQS 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE+ +I+ E   L  +   ++ +L +  +    I  E+ EVKE FS 
Sbjct: 417 KAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNADKLNALIKEELLEVKEKFST 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFK 546
                 R+T   ++    +    + +I  E + V IS++G+++   LK +         K
Sbjct: 477 P-----RKT---QIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLKVYEQQRRGGKGK 528

Query: 547 ------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595
                 E D ++    A+T D IL ++  G     K Y +P    +     G A+  LID
Sbjct: 529 NSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPE---MGRNAIGRALVNLID 585

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651
           L   + I        +D+   L+  +  G   IV+ +E+ A  R +G     V  E+   
Sbjct: 586 LQPGESIKATIPTKDFDADKSLVFFTKNG---IVKRTELSAFGRIRGGVRAIVLEEDDAL 642

Query: 652 LVVKVTGDHVA--VVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           +  K+    V    +  ++ + I FS++ + EM R  +GVR    ++G
Sbjct: 643 VTAKIIDSSVQELFMASSKGMCIRFSVESVREMGRVARGVRGMRLREG 690


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 352/576 (61%), Gaps = 27/576 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E V  VS+   +   Y+ YA+S I  RA+PD RDG KPVHRRI++ M E+G+      
Sbjct: 10  VRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPH 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGD+AAA RYT
Sbjct: 70  KKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYT 129

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  +L  +++D V++   ++    EP + P+K PNLL NG+SGIAVGMAT++P
Sbjct: 130 EARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMP 189

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + +I+ PE+SIE+L++ I  PDFPT G I+   E I  +Y  GRG  R+
Sbjct: 190 PHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPT-GGIIIGYEGIKRAYETGRGSIRI 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RA+  +E  G+    IV+ EIPYQV KSRL+E+IAE     ++  +  +RDES  + +RI
Sbjct: 249 RAKAEIEVKGKKER-IVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRI 307

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K    +  +++  ++  + +E  F + +N+  +   P+V+ L  +++ ++ HR+EV
Sbjct: 308 VIELKA-GANSAIILNRLYKHTQLENTFGV-INLALIDGEPRVLTLKELIECYIKHRKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
             RR  + ++  ++R+ ILKGL+IA  NIDE+I +I+   +    K  +++RF L+E Q 
Sbjct: 366 TIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIARFELSEEQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL++RL  L  LE  +I++E   L  +   +  +L S  + +  +  ++ E K+ +  
Sbjct: 426 KEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGD 485

Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSH--------SVD 539
           +     RRT   E+      TL ++  +E++ + + ++ R +++ L +            
Sbjct: 486 A-----RRTNIEEM-----VTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ +  KE D +   + A T +R++  +  GKAY +
Sbjct: 536 IAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQV 571


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/621 (35%), Positives = 356/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHFLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN    D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++    D
Sbjct: 592 LQLE-KGEKVQTVINIPEGAD 611



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  K+GD L   L       IL+ +  G A T   G++ +  G   A    I+L  +
Sbjct: 640 LIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRA-MGRTAAGVRGINLREH 698

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
             +V + +  +  ++LV+S KG       SE     R GK     +  EK   +  VT  
Sbjct: 699 DYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTII 758

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
              + V V+  +  ++ F ID + +  R   GVRL    D
Sbjct: 759 NSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSD 798


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 333/530 (62%), Gaps = 26/530 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     ++ K A
Sbjct: 26  VDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPERSYNKCA 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGEV+G+ HPHGD ++YD+LVRL Q +V RYPL  GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSPGNDGAAAQRYTETKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ ++E+ VDF+D Y+ ++ EP V P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 146 APLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E     + NPE S E+LL  ++    GPDFP+G +I+ ++  I ++YR GRG   +
Sbjct: 206 REVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMILGTK-GISDAYRTGRGSITM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PY      L  KIAEL+   +I  + D+RDE++     R
Sbjct: 265 RAVVNVEEI-QGRTCLVVTELPYMANPDNLAVKIAELVRDGKISGIADMRDETSGRTGQR 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +++++ F  NM  +  G VP+ +PLDG ++ W+ H+ E
Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPRTLPLDGFIRHWVTHQIE 381

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     +  +  ++    + E+Q
Sbjct: 382 VIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARDGLMELLDIDEDQ 441

Query: 428 VDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I+   +ELD ++AE + I  + +  +Q+  QI  E  E++E
Sbjct: 442 ARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKAI--IADPARQR--QIVSE--ELQE 495

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I +K  D   RRT        D +   + +I +E + V I+  G+++  +
Sbjct: 496 IVAKHGD--DRRTKVLMGYDGDMSV--EDLIPEEEMVVTITRGGYVKRTR 541


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/691 (35%), Positives = 389/691 (56%), Gaps = 45/691 (6%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  + +  +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW----CIV 269
             +L++Y+ GPDFPTG  I+ +  +I E+Y  GRG   +R    +E + + +      I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D +RIV+  K  S  P +++ +
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSY-PRVVLNN 298

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F  NM  L  G  PQ++ L   L  +L  R E + RR+ ++++  + R  
Sbjct: 299 LYKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDH 357

Query: 389 ILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +L+GLLIA  ++D II +IR+  D P  K  +++ + L+E Q DAIL ++LR L  LE  
Sbjct: 358 LLQGLLIALAHLDSIINLIRSAPDAPTAKGELINSYGLSEVQADAILQIQLRRLTALEAD 417

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E + L  +   +  +L+  ++    I  E  ++K  F+       RRTT   ++ A
Sbjct: 418 KIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFATP-----RRTT---ITHA 469

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           +       +I  E + ++++ +G+I+ +   + +         +    K+ D+++  L  
Sbjct: 470 EGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAGAKVKDDDTIEHFLTC 529

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--S 610
              D +L  S  G     KAY +P G+  S    G  I  ++ +   + I +       S
Sbjct: 530 CDHDSVLFFSDRGVVYSLKAYQIPEGSRTS---RGTPIVQMLPIPKEEKITSIVSVSEFS 586

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGDHVAVVGENR 668
           + + LV+ +KG        E  ++ R     + +S EE  +++ V +   +   ++G  +
Sbjct: 587 SEEYLVMLTKGGNIKKTALEAFSHIR-ANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQ 645

Query: 669 KLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695
            + I      DQ+  + R  +GV+    K G
Sbjct: 646 GMAIHFRCDNDQMRPLGRATRGVKSMKLKTG 676


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/613 (36%), Positives = 349/613 (56%), Gaps = 32/613 (5%)

Query: 13  VEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +EENV    + V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+    
Sbjct: 1   MEENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA
Sbjct: 61  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMA
Sbjct: 121 MRYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           T+IP HN++EI  A + +IDN      E +I++LL  + GPDFPTG  I+ +R  I E+Y
Sbjct: 181 TNIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D
Sbjct: 240 RTGRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S  +   +     R  + ++++  ++  + M+  F + M  L +G  P+VM L  +L+ 
Sbjct: 300 HSNREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLAL-VGNTPKVMSLLEMLEH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +LAH+ EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+     + K  ++  
Sbjct: 359 YLAHQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDT 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  +E Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+      N +   IR
Sbjct: 419 FDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSD----RNLLLRVIR 474

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RS 532
           +  EI + +   G  R T       D +   + +I KE   + ++  G+I        RS
Sbjct: 475 Q--EILAIAEKYGDDRRTAIGYDEFDIS--MEDLIPKENTVIAMTKLGYIKRMTVDNFRS 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590
                  +  +   + D ++  L   T   ++  ++ G+ Y + A  +   S    G AI
Sbjct: 531 QNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAI 590

Query: 591 QLLIDLNHNQDIV 603
             L+ L   + I 
Sbjct: 591 INLLQLQPEEKIT 603


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/754 (32%), Positives = 392/754 (51%), Gaps = 76/754 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R++++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+  VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E 
Sbjct: 131 AHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATNIPPHNLNET 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SI++L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTAGIIY-GLNGVREGYRTGRGKVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   I+V EIPYQV K  L+E++AEL+  K++  +  I+DES +    V+    R
Sbjct: 250 DIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PKLCNLRDLVEVFLEHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------------ 420
            ++    R  +L+GL +A  NIDE I II+N   P P +  +                  
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKN--SPTPPLAKQGLMDKSWDSSLVREMLVR 426

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+++Q   IL +RL+ L  LE+ +I  E  
Sbjct: 427 AASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKIIGEYK 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++A    +  +L+  ++    I  E+  VK+ F + T LG RR+   E +  +  T  +
Sbjct: 487 EVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQ-TKLGARRSVI-EHNVQELGT--E 542

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G++        R+ +       A   K+ D ++    A+T D +L
Sbjct: 543 DLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWML 602

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLL 615
             S  G+ Y L    +  G     G+ I  +  L  N+ I            + S   + 
Sbjct: 603 CFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDHYIF 662

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           + ++ G        E     + G   + +   + +       G H V +  +  K + F 
Sbjct: 663 MSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAVRFD 722

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            D +  M R  +GVR  + + G   +VI   + E
Sbjct: 723 EDDVRPMGRNARGVRGMALEPG--QNVIAMLVAE 754


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 336/583 (57%), Gaps = 29/583 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 8   DRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGYYK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+G  HPHGD  +YD+LVRLAQP+  R  L+ G GNFG+   D AAA RYTE 
Sbjct: 68  CARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAAMRYTEC 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VDFR  Y+   SEPVV P++FPNLL NG++GIAVGMAT+IPSH
Sbjct: 128 KMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMATNIPSH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     + NPE + E+LLE +I    GPDFPTG +IV  R  I ++YR GRG  
Sbjct: 188 NLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIV-GRRGIEDAYRTGRGSI 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDES+    
Sbjct: 247 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDESSSRTG 305

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F  NM  L +  VP+ + LD  ++ W+ H+
Sbjct: 306 QRLVIVLK-RDAVAKVVLNNLYKHTQLQDSFGANMLAL-VDDVPRTLSLDAFIRHWVTHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++    R  IL GLL A   IDE++A+IR     D+ +  ++   ++ E
Sbjct: 364 IDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIELLTIDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE  +I++E + L+A+     ++L S ++Q   ++ E++ + + 
Sbjct: 424 IQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAILESPERQRRIVSEELQAISDK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           +        RR+        D +   + +I +E + V I+  G+         RS K   
Sbjct: 484 YGDD-----RRSQLVPYE-GDMSI--EDLIPEEDVVVTITRGGYTRRTRTDLYRSQKRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             +     K+ D +       T   +L  +  G+ Y   A  L
Sbjct: 536 KGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHEL 578


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 352/604 (58%), Gaps = 25/604 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NINIPKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D++ VD  + Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +  +A IDN +IS ++L+ YI GPD PTGGI++   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + IV+TE PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAISDIRD 303

Query: 304 ESAED-VRIVLFPKNRS--LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  + +R V+  K  +   + + +++ +F  ++++     NM  ++ G+ P+ + L  I
Sbjct: 304 ESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGK-PKTLGLKAI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---M 417
           LK ++ H+++V+ RR+   ++  ++R  I++G + A   +DEI+  IR     K     +
Sbjct: 363 LKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V++F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+ +  I  
Sbjct: 423 VNKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYKELQRRINALTKILNSEKELFKVIKK 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           E+ EVKE +        RRT         K  +++ +++ E + + ISN G+I+ +    
Sbjct: 483 ELNEVKENYG-----DERRTNIIHDDEKAKIDIEELILD-EDVIITISNEGYIKRVSEKY 536

Query: 534 -KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590
            K  +  +  + ++EGD  K  L  +T   +++ + +G  Y L   N+  +  +  GE +
Sbjct: 537 YKRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQLRIVNIAEMKWKEKGERL 596

Query: 591 QLLI 594
             LI
Sbjct: 597 DNLI 600


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 358/638 (56%), Gaps = 54/638 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      F K 
Sbjct: 19  HVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFSKC 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD ++YD++VRL Q +  RYPL++GQGNFG+   D AAA RYTE R
Sbjct: 79  ARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF+D Y+ E+ EPVV P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 139 MAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     + +PE S E+LL  ++    GPDFPTG  I+ ++  I E+YR GRG   
Sbjct: 199 LREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQILGTK-GIEEAYRTGRGSIT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA   VEE+ +   C+VVTE+PYQV    L  KIA+L+   R+  + DIRDE++     
Sbjct: 258 MRAVVNVEEI-QNRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIADIRDETSGRTGQ 316

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R     +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W  H+ 
Sbjct: 317 RLVIVLK-RDAVAKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSLDAFIRHWTTHQM 374

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+++ +   ++R+ IL+G L A   +D++IA+IR   + D+ +  ++    + E 
Sbjct: 375 EVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAGLMELLEIDEI 434

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNL+LR L  LE  +I  E   + AE   +  +L   ++Q + +  E+  + E +
Sbjct: 435 QANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDILAKPERQRSIVGEELDGIVEKY 494

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538
                   RRT        D     + +I +E + V I+  G+ +  +S +         
Sbjct: 495 GDE-----RRTHILPY---DGDMSMEDLIPEEEVVVTITRGGYAKRTRSDAYRQQKRGGK 546

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGH------ 586
            +     +E D +       TT   LL  T+       K Y LP G+  S   H      
Sbjct: 547 GVRGTQLREDDIVD-HFFVTTTHHWLLFFTNFGRVYRAKGYELPEGSRDSKGQHVANMLA 605

Query: 587 ---GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
              GE I  ++DL           YD+   L++ + +G
Sbjct: 606 FQPGEHIAQVLDLRD---------YDAAEYLVLATRRG 634


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/528 (39%), Positives = 323/528 (61%), Gaps = 20/528 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+AM + G     AF K A
Sbjct: 17  IDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFSKCA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+   D AAA RYTE +M
Sbjct: 77  RVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETKM 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +DED VDF+D Y+    EP V PS+FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 137 APLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ + AL  + +PE S E+LLE +I    GPDFPTG  I+  +  I ++YR GRG   +
Sbjct: 197 REVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVK-GIQDTYRTGRGSITI 255

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   R+  + DIRDE++     R
Sbjct: 256 RAVVSIEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTGQR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ +++  + ++  F  NM  + +  VP+ + LDG +  W+ H+ E
Sbjct: 315 LVIVLKRDAV-AKVVLNNLYKHTQLQENFGANMLAI-VDNVPRTLALDGFITAWVDHQIE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+G L A   +DE+IA+IR     D+ +  + S   + + Q
Sbjct: 373 VIVRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEAREGLKSLLEVDDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E D +  +  +  ++L    +Q + ++ E+ E+ + F 
Sbjct: 433 ADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAILADSARQRSIVSEELTEIVDRFG 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                  RRT        D +   + +I +E + + ++  G+I+  +S
Sbjct: 493 DD-----RRTEIMLGFDGDMSL--EDLIPEEEMVITVTRGGYIKRTRS 533


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 357/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++  N D
Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420
           FR++       I +G  +A  NIDE+I +I+ + D P+                 M+SR 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A  
Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + ID L    K +  +I   IRE  E+    T+ G  R +       D A   + +I + 
Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/597 (37%), Positives = 331/597 (55%), Gaps = 50/597 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KSA+IVG+V+G 
Sbjct: 13  MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAKIVGDVMGN 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR+ +VA  +L 
Sbjct: 73  YHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLAKVANALLD 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF D Y+    EP V P++FPNLL NG  GIAVGMAT++P HN+ E+ +  LA
Sbjct: 133 DLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEVIDGCLA 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            I NP I+ E+L++YI GPDFPT  +I+  +     +Y  GRG   +RAR  +EE     
Sbjct: 193 FIANPAITSEELMQYIPGPDFPTAPLIL-GQAGARAAYTTGRGSVLMRARHEIEEKRGDR 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IV T IPYQV KS L+EKIA+    KRI  + DIRDES+ E VR+V+  K R   P++
Sbjct: 252 KSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLK-RDASPEV 310

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  I+  +  +  FP NM  +  GR P+V+ L  I++ +++ R EV+ RR+ F +    
Sbjct: 311 VLNQIWRYTPAQASFPANMLAIKGGR-PEVLTLRDIVQAFVSFREEVITRRTKFELNKAR 369

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----------------- 416
            R  +L GL++A  N+DE++A+IR    P+           P+                 
Sbjct: 370 ERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEAIEPTA 429

Query: 417 --MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + L+E QV AIL+LRL  L  L   +I  EL  L +E E+  S+L    + +  
Sbjct: 430 DQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRGKLFGV 489

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---- 530
           +  E+ E+K+ ++             E++ A      + +I +E + V +++ G+I    
Sbjct: 490 LQDELVEIKDEYATP--------RVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTP 541

Query: 531 ----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
               R+        S +  K+ D++       T + +L  +  G+ Y +    L  G
Sbjct: 542 LATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEG 598


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/627 (36%), Positives = 349/627 (55%), Gaps = 48/627 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R +
Sbjct: 188 LGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E VG     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L  G +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------ 420
           + + +     R  IL GL IA  NIDEII II+   + +  K  +++R            
Sbjct: 366 TIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                         S TE Q  AIL ++L+ L  +E+ +++ +L +L  +  +  ++L S
Sbjct: 426 LVDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILAS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFASP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I        RS K      S L  ++ D         T   +L  S  GK Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYK 597

Query: 580 L-LSG-RGHGEAIQLLIDLNHNQDIVT 604
           L LS  +G G  +  ++ L  N+ I  
Sbjct: 598 LPLSNPQGKGRPMVNILSLQENEHITN 624


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/693 (34%), Positives = 382/693 (55%), Gaps = 37/693 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V    L     E Y++YA+S +  RA+PD+RDG KPVHRRI++AM E+GL     +KK
Sbjct: 88  ERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKK 147

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE 
Sbjct: 148 CARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRYTEC 207

Query: 135 RMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  + E ++L  ++++ VDF   ++    EP + P++ PNLL NG SGIAVGMAT+IP 
Sbjct: 208 RLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPP 267

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  ALI NPE ++++LLEY+ GPDFPTGGII+ +   + E++R GRG   +R
Sbjct: 268 HNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EAFRTGRGRVVIR 326

Query: 254 ARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            +  +E +   +    I++ EIPYQ  K+ L+EKIA+L+  K +  + DIRDES      
Sbjct: 327 GKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMR 386

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  DP +++ +++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  V
Sbjct: 387 IVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQ-PKLMGLKELLQAFLDFRCSV 445

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F++     R  I++G+++   N+DE+I  IR               F L+E Q 
Sbjct: 446 VERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQA 505

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL++ LR L  LE  +   E  +L  +  K++ LL+S KQ    I  E  E+K  F  
Sbjct: 506 EAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKF-- 563

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-------- 540
                 RR+   +    D   +   +I  E + + IS +G+++ +K  + +L        
Sbjct: 564 ---FNPRRSMLEDTDSGDLEDID--VIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGK 618

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598
           S    +  D++   L     D++L  S  G  Y+ PA  +   S    G  +  ++ L+ 
Sbjct: 619 SVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSD 678

Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTR-KGKTFLKVSSEEKMK 651
            + I     V+ F  D    +L V    N +I + S    A+ R  G   +++  ++++K
Sbjct: 679 GERITSIIPVSEFAADQYLVMLTV----NGYIKKVSLNYFASIRCTGIIAIQLVPDDELK 734

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
            V   +  D VA+  +N  +++     I  + R
Sbjct: 735 WVKCCSNNDFVAMASQNGMVILTPCANIRALGR 767


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 357/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++  N D
Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/600 (35%), Positives = 356/600 (59%), Gaps = 29/600 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++
Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKNMIRHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+    K     ++ +F+
Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFA 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+
Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536
            + +        R+T   E     K  +++ +I +E + + +S  G+I+       ++S+
Sbjct: 488 SDKYG-----DERKTNIIEDDAKSKIDIEELIIVEE-VMITLSKDGFIKRIPVKNYIRSN 541

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
           S +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+  L  +  GE +  +I
Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTII 600


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/693 (33%), Positives = 378/693 (54%), Gaps = 61/693 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +      
Sbjct: 4   TFDNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQ 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK AR+VGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDS AA R
Sbjct: 64  PYKKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++ E I+  +D++ VD    +++   EP V P+K PNLL NG +GIAVGMAT+
Sbjct: 124 YTECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P+HN+ E+ +   A IDNP+I  E L++YI GPDFPTG  I    + + ++Y  GRG  
Sbjct: 184 MPTHNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIY-GLQGVKDAYETGRGRI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E  G     IVVTEIPY V K+ L+  IA+L    +I  + ++ DES  + +
Sbjct: 243 VMRAKAEIES-GDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGM 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++L+  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR 
Sbjct: 302 RIVVDCK-RDANANVLLNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRH 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIRN   P      + +RF L E 
Sbjct: 360 DVTIRRTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEARFELDEL 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RL  L  L   Q+  E D+L     ++  +L++ ++    +  +++EVKE +
Sbjct: 420 QSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNPERCKEVMKADLQEVKEKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-- 544
                   RRT   E+   D     +     +P+ + IS+ G+I+        LS  H  
Sbjct: 480 GDE-----RRT---EIIPFDHEFNAEDFYPDDPVVITISHMGYIKRTP-----LSEFHEQ 526

Query: 545 -----------FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
                       ++ D  +    A   + +L  +  G     K Y +P G+  S    G 
Sbjct: 527 GRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNS---KGR 583

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645
           AIQ ++++  +         D+   +L + +  +   +    ++  T++G   KT L+  
Sbjct: 584 AIQNMLNIEPD---------DAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAY 634

Query: 646 SEEKMKLVVKVT---GDHVAVV----GENRKLL 671
           S  +   V+ +    GD V  V    G N  LL
Sbjct: 635 SRPRANGVIAININEGDQVVGVRLTNGHNELLL 667


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/701 (33%), Positives = 388/701 (55%), Gaps = 47/701 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA S I +RA+PD RDG KPV RRI++ M+EMGL       K AR+VG+V+G+LHPH
Sbjct: 29  FLEYAYSVIYQRALPDARDGMKPVQRRILYQMNEMGLRHDRGHVKCARVVGDVMGRLHPH 88

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEARMTQVAELILQGVD 148
           GD ++YD+LVRL+QPF  R PL+ G GNFG++ GD A AA RYTEAR+ + AE ++  +D
Sbjct: 89  GDTAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDAPAAMRYTEARLDRAAEQLVASID 148

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAVGMAT++  HN+ E+  AA  LI 
Sbjct: 149 ENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAVGMATNMAPHNLGEVVAAARHLIA 208

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           +PE ++E+L E++ GPD PTGG IV   + I ++YR GRG F+ RA   +E+V      +
Sbjct: 209 HPEATLEELTEFVPGPDLPTGGTIV-GLDGIRDAYRSGRGTFKTRATVSIEKVSARRTGL 267

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326
           VVTE+PY V   ++I +I EL+ +K++  + D++D  +  + +R+V+  KN   +P+ ++
Sbjct: 268 VVTELPYSVGPEKVISRIKELVQSKKLQGISDLKDLTDRTQGLRLVIELKN-GFNPEAVL 326

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           E ++ L+ ME  F +N   L  G+ PQ + L  +L+ ++ HR +V+ RRS FR      R
Sbjct: 327 EELYRLTPMEESFGINNVALVDGQ-PQTLGLRELLEVYVNHRLDVVRRRSEFRRAKRQER 385

Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + ++ GLL+A L+ID +I++IR  +     +  ++  + L+E Q   IL   LR L + +
Sbjct: 386 LHLVDGLLVALLDIDRVISLIREAEDTAAARESLMGAYDLSEIQARYILETPLRRLTRFD 445

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++++E D L  E + + ++L S K+    ++ E+ +V + F+       RRT   E  
Sbjct: 446 RMELETERDKLNKEVDALTAVLESDKKLRRLVSKEMGDVAKEFATP-----RRTQLRESD 500

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--LSALHFKEGDSLKIALHAHTTD 561
              ++ +    +  +P  V++   G I   K  SV      L  +  D++ +++   +  
Sbjct: 501 GVARSAVIPLEMADQPCHVLMGVHGAIGRSKGPSVPRVYEGLRTRH-DAVHVSVPTTSRS 559

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRG-------HGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            + L++  G+   +P   L  L   G        G  +   + L+ ++ +V+    D++ 
Sbjct: 560 AVGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSMDASG 619

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-----DHVAVVGEN 667
               + ++G         +  +    K   +V + +    VV VT      + +A +   
Sbjct: 620 PGFALGTRGGVV----KRVSPDYPPNKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSE 675

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
            +LL FS            VR Q    GG++ V   ++ EG
Sbjct: 676 AQLLRFS---------ASAVRPQGRPAGGVAGV---RLSEG 704


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/694 (34%), Positives = 380/694 (54%), Gaps = 49/694 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +D+D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  E L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEIES-DESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVVLNKLFKMTQLQSSFSVNNIALVKGR-PRLLTLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR  + P      +  RF
Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPEECKRVMKLELEE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           VKE F        RRT   E+   +     +     +P+ + +S+ G+I+          
Sbjct: 477 VKEKFGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
               V     + ++ D  +    A     +L  +  G     K Y +P G+  S    G 
Sbjct: 529 ARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTS---KGR 585

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645
           AIQ L++++ + D V AF        L V    +   ++   I+  T+ G   KT L+  
Sbjct: 586 AIQNLLNIDAD-DSVNAF--------LRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAY 636

Query: 646 SEEKMKLVVKVT---GDHVAVV--GENRKLLIFS 674
           S  +   V  +T   GD V  V     + LLI +
Sbjct: 637 SRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMA 670


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 348/612 (56%), Gaps = 63/612 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +   + K AR+
Sbjct: 10  SISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNRPYVKCARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMRYTECRLDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLAE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +   +L L+ +P+ +I++L++ I  PDFPTGG+I      + E YR GRG   +RAR   
Sbjct: 190 VIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIY-GVTGVREGYRTGRGRVVMRARTHF 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE GR G   I++ E+PYQV K  L+E+IAE +  K++  + DIRDES +    V+    
Sbjct: 249 EEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+   ++++ ++F  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREV+ RR+ 
Sbjct: 309 RNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420
           F ++    R  +L+GL +A  NID+ IAIIR    P P+                 M+ R
Sbjct: 368 FELRKARERGHVLEGLAVALANIDDFIAIIRAAPTP-PIARQELMARSWDSSLVRSMLER 426

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E Q   IL +RL+ L  LE+ +I +E  
Sbjct: 427 TGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRILNEYG 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREV-KEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           +++ +  ++  +L   ++    I  E+  V  E   K+ D    R +  E++ +D  T  
Sbjct: 487 DVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDT---RRSEIELNASDLET-- 541

Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+I        R+ K       A   KE D +     A+T D I
Sbjct: 542 EDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYI 601

Query: 564 LLLSTDGKAYTL 575
           L  S  G+ Y L
Sbjct: 602 LCFSDRGRMYWL 613


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/768 (33%), Positives = 407/768 (52%), Gaps = 68/768 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +   ++E +VK       +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G 
Sbjct: 10  GSGTKVIERDVKQ-----EIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D    ++KSA  VG V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  
Sbjct: 65  DPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AAYRYTEARM+++A  +L  +++D +D+   ++E   EP V PS+FPNLL NG+ GIAVG
Sbjct: 125 AAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN++E+     AL+DNP+I +  L+E++ GPDFPTGGII+  R  I  +Y  G
Sbjct: 185 MATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIM-GRSGIRAAYATG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R R  + E   G + I++TEIPY V K+RLIE IA+L+  KRI  + D+ DES+
Sbjct: 244 RGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLNDESS 303

Query: 307 E--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
               ++IV+  K +  +P +++  ++  + ++    + M  L  G VP++M L  +++ +
Sbjct: 304 SRTGMKIVIEIK-KDANPQVVLNQLYRYTQLQDTVGVIMLALDDG-VPKIMSLKTVMERY 361

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSR 420
           +  + EV+ RR++F ++    R  IL+GL  A   +DEIIA IR       + +  ++  
Sbjct: 362 IDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVMDN 421

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F   E Q DAI+ L+L  L  LE  +I+ EL  L         +L++ +     +  +++
Sbjct: 422 FGFDELQADAIVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKRIVKTDLQ 481

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV 538
            + + +        RRT+   VS        + +I +E     +++ G+I+  +L ++  
Sbjct: 482 TLADKYGDE-----RRTSIEAVS---GEVDIEDLIPEETCIFTLTHEGYIKRTTLDTYQA 533

Query: 539 D------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH- 586
                  +  +  K+ D  +      T D +L ++  G     K Y +P G+  +   H 
Sbjct: 534 QNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSHI 593

Query: 587 --------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                   GE + L++  +   D    ++   T + L+  +  + F         N RK 
Sbjct: 594 VNLLQLQEGEKVTLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQF--------RNIRKA 645

Query: 639 KTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              + +   E   LV   +   GD + V   +   + F+      M R G GVR+   ++
Sbjct: 646 G-LIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAMGRTGHGVRVIRLRE 704

Query: 695 GGISDVICFKICE-GLTWI----DSAGRSYNRSENDLLGWLGKRGGVG 737
           G    VI   +C  G T +    D  GR   RS  D    + KRGG+G
Sbjct: 705 GDY--VIGAGVCRPGATVLTITEDGKGR---RSRVDDY-RITKRGGLG 746


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 336/582 (57%), Gaps = 34/582 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 13  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 73  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 133 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 192

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++N E S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 193 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 252 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D+++ F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 311 LVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 369 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E + 
Sbjct: 429 ANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY- 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                G  R T       D +   + +I +E I V ++  G+I        R+ K     
Sbjct: 488 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           +     KE D +     + T   +L  +  G     KAY LP
Sbjct: 541 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELP 582


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/786 (31%), Positives = 415/786 (52%), Gaps = 63/786 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ ++ E ++  ++++ VD    +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI++E+L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRIIMRAKAEIESDDTHDK-IVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANIILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLQECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421
           + HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF
Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + Q  AI+++RL  L  L   ++ +E D ++   + +  +LN+ ++    +  E++E
Sbjct: 417 DLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPERCKEVMKEELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
           +   V       +E D  +    A     +L  +  G     K Y +P G+  +    G 
Sbjct: 529 ARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTA---KGR 585

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645
           AIQ ++ L+ + D V AF        L +    +   ++   ++  T+ G   KT L+  
Sbjct: 586 AIQNMLALDPD-DSVNAF--------LRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHY 636

Query: 646 SEEKMKLVVKVT---GDHVA---VVGENRKLLI---------FSIDQIPEMSR----GKG 686
           S  +   V+ +    GD V    +   N +L+I         F  D +  M R     +G
Sbjct: 637 SRPRTNGVIAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTMGRVSTGVRG 696

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +RL    + G+  +I     E  T +  +   Y +        L  RGG G        +
Sbjct: 697 MRLDDDGEDGVIGMIVVNDTEKETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITEK 756

Query: 747 SGKFLS 752
           +GK ++
Sbjct: 757 TGKLVA 762


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  +  +RDES  D   + F 
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L  A    TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T K KT  + K+  E +++  V  +
Sbjct: 592 YVEVVDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYKSKTVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++  N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/598 (36%), Positives = 342/598 (57%), Gaps = 46/598 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NP++S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR   +    K  +V  F 
Sbjct: 360 DFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQW 472
           L+  Q DAIL ++LR L  LE  +I +E          L ++LA +E+I++++       
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIED----- 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
                E+ ++K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ 
Sbjct: 475 -----ELTQIKTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 533 LKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +   + +         +A   K+ D ++  L     D++L  S  G  Y + A  + S
Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPS 579


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/616 (35%), Positives = 363/616 (58%), Gaps = 30/616 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ A  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  + S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKNSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    + +  D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 TRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVALAEGK-PKTLGLKAMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ R++   ++  ++R  I++G + A   +DEII  IR     K     ++ +FS 
Sbjct: 368 HQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L+S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILSSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538
           E ++      +RRT+  E     K  +++ ++E++ + V +SN G+ +  +LKS+   S 
Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVVTLSNEGFTKRIALKSYNRSSA 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           ++  + ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L      
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 594 IDLNHNQDIVTAFVYD 609
           IDL  ++ I+ AF  D
Sbjct: 602 IDL--SETIIEAFSID 615


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 338/592 (57%), Gaps = 34/592 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G      + K +
Sbjct: 71  VDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNKCS 130

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL+ GQGNFG+   D AAA RYTE RM
Sbjct: 131 RVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTECRM 190

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ + E+ VDF   Y+ +  +P V PS+FPNLL NG++GIAVGMAT IP HN+
Sbjct: 191 APLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPHNL 250

Query: 197 QEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +AA  L+ NPE S E LLE     I GPDFPTG +I+  R  + ++YR GRG   +
Sbjct: 251 REVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKR-GVEDAYRTGRGSITM 309

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L EKIA L+   ++  + DIRDE++     R
Sbjct: 310 RAVVNVEEI-QGRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTGQR 368

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ +P+   ++ W+ H+ +
Sbjct: 369 LVIVLKRDAI-AKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPISAFIRYWVEHQID 426

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR+   ++R+ IL+GLL A   +DE+IA+IR     D  +  ++    + E Q
Sbjct: 427 VIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGLIELLDIDEIQ 486

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  + D L ++ +    +L   ++Q   ++ E+ E+ E + 
Sbjct: 487 ANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDILAKPERQRQIVSDELAEIVEKYG 546

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E + V I+  G++        RS +     
Sbjct: 547 DD-----RRSQIVPF---DGDMNMEDLIPEEDVVVTITRGGYVKRTKVSEYRSQRRGGKG 598

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
           +     +  D +       T D +L  +  G     K Y LP G+  S   H
Sbjct: 599 VRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGSRDSKGQH 650


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 320/523 (61%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 15  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VD++  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 135 ECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIV-GLGGIKDAYASGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  +    +R
Sbjct: 254 RATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RFSL+E Q
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERFSLSEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E   + ++L S  +    ++ E+  V + F 
Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNDEIAALTAILESDAELRKLVSSELAAVAKKF- 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E + +  A++    +  +P  V++S+ G +
Sbjct: 491 -GTD---RRTVLLESAGSQVASVPLE-VADDPCRVLLSSTGLL 528


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 347/598 (58%), Gaps = 37/598 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN  + +T+  + ++ +     L + YL Y++S    RAIPD+RDG KP  RR++ AM +
Sbjct: 3   DNQQDFSTVTPQGIEKL-----LSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDK 57

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L  G+++ K AR+VG+VIGK HPHGD SVYD++VR+AQ F  R  LI GQGNFG+IDG
Sbjct: 58  LNLRKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDG 117

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAAYRYTE RM ++AE +L  +D++ VD + T++   +EP V P+++PNLL NGT+GI
Sbjct: 118 DSAAAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGI 177

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
            VGMATSIP HN+ E+  A +AL+D P I+IE++++++ GPDFPT GI +   + I   Y
Sbjct: 178 GVGMATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISI-GFDGIRRLY 236

Query: 244 RLGRGGFRVRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             GRGG  +R R   +E+ GR    IV+TEIPY V K  +++KIAEL+  K I  +  + 
Sbjct: 237 ETGRGGVHLRGRAEIIEKNGREQ--IVITEIPYAVNKENMVKKIAELVNNKVITGISSLN 294

Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES+  V  R+V+  K  ++   +++  ++  + +         V+   + P+ + L  +
Sbjct: 295 DESSSRVGIRVVVGIKTNAM-ATVVINQLYKHTQLAVSIGCQFLVVD-NKQPKTLNLKQL 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           L+ +L HR EV+ RR  F ++  +RR  IL+GLL A  +IDE+I IIR   N +     +
Sbjct: 353 LQAYLDHRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+  Q  AIL++RL  L  L   ++ +E + L+        LL + + + + +  
Sbjct: 413 KERFELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKE 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
           E+ EV++ F+       RRT   E+   ++    + +I +   T+ ISN G+I+ + +  
Sbjct: 473 ELIEVRDKFADE-----RRT---EMRPGERDINYEDLIARASATITISNEGYIKRVPTEI 524

Query: 537 -------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582
                     +  +  K+ D +K    A T D I+  +  G     K Y +P    +S
Sbjct: 525 YRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVS 582


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 22/529 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + +   ++  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 15  ERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEMGLRPEKGHVK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VG+V+GKLHPHGD S+YD++VRL Q F+ R PLI G GNFG++D D  AA RYTEA
Sbjct: 75  SSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGSLD-DGPAAPRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+   ++P V P+ FPNLL NG SGIAVGMAT++  H
Sbjct: 134 RLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGASGIAVGMATNMAPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +P+ S+E+L++++ GPD PTGG I+     + ++Y  GRG F+ RA
Sbjct: 194 NLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKII-GLAGVKDAYANGRGAFKTRA 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  VE +      +VVTE+PY V   R+IEKI + + AK+I  + D+ D  +    +R+V
Sbjct: 253 KVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISDVTDLTDRNHGLRLV 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K     PD ++E ++ L+ +E  F +N   L  GR PQ + L  +L+ +L HR +V+
Sbjct: 313 IGIKT-GFSPDAVLEQLYRLTPLEDNFSINAVTLVDGR-PQTLGLKALLEVFLKHRLQVV 370

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RRS+FR+     R+ +++GLL+A ++IDE+I +IR   + D+ +  +   F L+E Q +
Sbjct: 371 TRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTRLRDVFDLSELQAE 430

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L AE  ++++LL+        ++ E+ +V + F   
Sbjct: 431 YILELRLRRLTKFSRIELEAEADKLRAEIARLEALLSDDTLIRALVSDELEQVADKFGTP 490

Query: 490 TDLGRRRTTFCEVSRADKATLQQAM--------IEKEPITVVISNRGWI 530
                RRT   E   +   T + A         I  +P  V++S  G +
Sbjct: 491 -----RRTLLTEAPASIATTSRSAARKNLPVLEIADDPCVVLLSTTGRV 534


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/485 (39%), Positives = 308/485 (63%), Gaps = 10/485 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T+  + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+     
Sbjct: 11  QTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNTPD 70

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  R  L+ G GNFG+IDGD AAA 
Sbjct: 71  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSIDGDGAAAM 130

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  ++  +++D VDF   ++E + EPVV P++ PNLL NGT+GIAVGMAT
Sbjct: 131 RYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTTGIAVGMAT 190

Query: 190 SIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN         I ++L  + GPDFPTGGII+  R  I E+YR
Sbjct: 191 NIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIIL-GRAGIEEAYR 249

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VRA   +E +  G   I+V+EIPY V K+R+IEKIA+++  KR+  +  +RDE
Sbjct: 250 TGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDGITALRDE 309

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++ +   V+    + ++P++++  ++  + ++  + + M  L +G  P++M L  +L  +
Sbjct: 310 TSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLAL-VGNQPRIMSLKEVLDHY 368

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + H+ +V+ RR+ F +     R  IL+GLL A  NIDE+I IIR+       K  ++ RF
Sbjct: 369 ILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKEQLMGRF 428

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q  AI+++RLR+L  LE  ++++E   L+ +      +L   K+    +  E++E
Sbjct: 429 ALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGILADHKKLLTVVKEEMQE 488

Query: 482 VKEIF 486
           + + +
Sbjct: 489 IADKY 493


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/616 (35%), Positives = 354/616 (57%), Gaps = 27/616 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  D ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I  E L+ YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  +E        IVVTEIPY V K++LIE IA+L+   +I  + ++ DES
Sbjct: 240 GKGRVVIRAKAEIES-HESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVNGR-PRLLTLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ +IR    P   +  +  RF
Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E + L      + S+L+  +     +  E++ 
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPELCKKVMKDELQA 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+  + +    +     +P+ + +S+ G+I+       K  
Sbjct: 477 VKEKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSEFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591
           +   V       +E D  +    A   + +L  +  G+ Y L    +  G     G AIQ
Sbjct: 529 ARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFV 607
            +++++ + D V AF+
Sbjct: 589 NMLNIDSD-DSVNAFL 603


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 244/697 (35%), Positives = 374/697 (53%), Gaps = 65/697 (9%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M +
Sbjct: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DG
Sbjct: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  GI
Sbjct: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I+  R  I  +Y
Sbjct: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    D+++  ++  + +++ F +NM  L+ G  P+   L GILK 
Sbjct: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+     ++ R
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+E Q  AIL LRL  L  L    I++EL++L
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQ 512
             E ++   +L+S  +    I  E+  VK+          RRT   E  +   D     +
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-----E 530

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             I +E + V +S+ G++        R+ +      S +  ++ D +       T   +L
Sbjct: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590

Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615
             S+ G     K + LP G   S +  G+A+  ++ LN  + I T   +     S   L 
Sbjct: 591 FFSSLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647

Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           VV  +  GN    + S+ I   R GK  +K+ S +++
Sbjct: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 43  VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+P+ S  +LLE +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    D  +  +++   + + Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q   +  E+    EI +
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDEL---DEIVA 515

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
           K  D   RRT     S        + +I +E + V ++  G+I+  K+            
Sbjct: 516 KYGD--ERRTRILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586
           +     +E D +       T + +L  +  G     KAY LP G+  S   H        
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGSRDSKGQHVANLLQFT 630

Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607
            GE IQ ++ +  N D+    V
Sbjct: 631 PGETIQAVLSI-PNYDVAKYLV 651


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 362/614 (58%), Gaps = 37/614 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M+E+        +K
Sbjct: 7   DKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG+IDGD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EP V PS+FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 RLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + S+E++L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            RVRA   +E    G   I+VTE+PY V K+RLIEKIAEL+  K+I  +  I DES  E 
Sbjct: 246 IRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREG 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RI +  + R ++ ++L+  +   + ++  F + M  L +   P+V+ +  +L+ +L H+
Sbjct: 306 IRINIELR-RDVNANVLLNQLLKHTQLQDSFGVIMLAL-VNNEPKVLNILQMLEYYLDHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           ++V+ RR+ + +   + R  IL+GLL A  +IDE+I IIR   N  + K V++ RF LT+
Sbjct: 364 KDVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMERFELTD 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RLR+L  LE  ++++E   L A+  ++ ++L    +    I  EI  + E 
Sbjct: 424 PQAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAILADENKLLGVIKKEILVISEK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           +        RRT   ++   D  +++  +I  +   + ++N G+I+ +   SVD      
Sbjct: 484 YGDD-----RRT---KIGFEDDMSVED-LISDDDTVIAMTNLGYIKRM---SVDNFKSQN 531

Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592
                +  +   + D ++  L       I+  +  G+ Y + A  +  +GR   G AI  
Sbjct: 532 RGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEAGRTARGTAIVN 591

Query: 593 LIDLNHNQDIVTAF 606
           L+ L   + +  A 
Sbjct: 592 LLQLQPGEKVTAAI 605


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 322/527 (61%), Gaps = 21/527 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G     ++ K A
Sbjct: 37  IEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRSYNKCA 96

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+   HPHGD ++YD++VRL+QP+  RYPLI GQGNFG+   D  AA RYTE RM
Sbjct: 97  RVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAAPRYTECRM 156

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ + ED VDF   Y+    +P V P++FPNLL NG++GIAVGMAT IP HN+
Sbjct: 157 QPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMATQIPPHNL 216

Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E    L+DNPE +     EKLL+ I GPDFPTG +I+  R  I ++YR GRG   +
Sbjct: 217 REVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIM-GRSGIEDAYRTGRGSITM 275

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE++     R
Sbjct: 276 RAVVEVEEI-QGRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDETSGRTGQR 334

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ +P++  ++ W+ H+ E
Sbjct: 335 LVIVLKRDAV-AKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPINAFVRHWVDHQVE 392

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + ++ IL+GLL A   +DE+IA+IR     ++ +  ++    + E Q
Sbjct: 393 VIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLMDLLDIDEVQ 452

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  E D L A  E ++ +L +  +Q   I+ E+  + E + 
Sbjct: 453 ARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDILATPARQRTIISEELAAIVEQYG 512

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                  RRT   E+  +D     + +I  E + V I+  G+ + ++
Sbjct: 513 DE-----RRT---EIVPSDAEVNMEDLIPDENVVVTITRGGYAKRIR 551


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/638 (35%), Positives = 358/638 (56%), Gaps = 38/638 (5%)

Query: 9   SNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++T +E + ++ V L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G  
Sbjct: 2   TDTPIERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGGYR 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F K +RI+G+V+G+ HPHGD ++YD+LVRLAQP+V R P+ISGQGNFG+   D AA
Sbjct: 62  PDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDPAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++  VA  +++ +DE+ VDF+  Y+   SEP V PS+ PNLL NG++GIAVGM
Sbjct: 122 AMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+ E A   + +PE +    ++ LLE I GPDFPT G+IV +   I + Y
Sbjct: 182 ATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGT-SGIEDMY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   +EE  +G   +VVTE+PYQV    L+ KIA+L+   R+  + D+RD
Sbjct: 241 RTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDLRD 300

Query: 304 ESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES+  V R ++    R     +++ +++  +D+++ F  NM  L +  VP+ + LDG + 
Sbjct: 301 ESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLAL-VDDVPRTLTLDGFIT 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            W+ H+ +V+ RR+ +R++  + R  I +GL  A   +D++IA+IR     D+ +  ++ 
Sbjct: 360 NWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEARTGLIE 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL ++LR L  LE  +I  EL  L         +L   ++Q   ++ E+
Sbjct: 420 LLEIDEIQANAILEMQLRRLAALERQKILDELAELERMIADFTDILERPERQREIVSTEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--- 536
               EI  K  D  R R     +  AD     + +I  E + V I++ G+ +  K+    
Sbjct: 480 ---AEIVDKYGDDRRSR-----IIPADGDLSDEDLIPDEEVVVTITSGGYAKRTKTDLYR 531

Query: 537 -----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                   +     ++GD ++          IL  +T G     KAY LP     +  GH
Sbjct: 532 VQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHLPEAGRDAKGGH 591

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
              +  L+    ++ I        Y+    L++ + KG
Sbjct: 592 ---VAGLLSFQPDEQIAQVLAVRDYEQAPYLVLATRKG 626


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 319/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     F 
Sbjct: 15  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 75  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+  + EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 135 ECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  GRG F++
Sbjct: 195 PHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIV-GLGGVRDAYEKGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V +    +VVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 254 RATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLTDRQHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN   +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  +++RF L++ Q
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIARFELSDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+ +V + F 
Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLKAEIEELTRILDSDAELRKLVSAELAQVAKKFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E + A   T     +  +P  V++S+ G +
Sbjct: 492 TE-----RRTVLLESADA-PVTAVPLEVADDPCRVLLSSTGLL 528


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/737 (33%), Positives = 386/737 (52%), Gaps = 40/737 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KSA  VG V+G 
Sbjct: 28  IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGAVLGS 87

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A  +L 
Sbjct: 88  YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 148 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ID+P+I +  L+EYI GPDFPT GII+  R  I  +Y  GRG   +R R  +EE   G 
Sbjct: 208 YIDDPDIDLPGLMEYIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  +  ++
Sbjct: 267 TQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 326

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + ++    
Sbjct: 327 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 385

Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L  L  
Sbjct: 386 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 445

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL +L A+ E  +++L    +    +  E+ E+K+ F        RRT   E
Sbjct: 446 LEILKIEEELASLQAKIENWEAILADDARVLAIVKEELLEMKKRFGDE-----RRT---E 497

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553
           +         + +I +E     ++  G+I R LK+           +S +  KE D ++ 
Sbjct: 498 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 557

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                T D +L ++  G     K YT+  G+  S    G  I  L+ L   + +      
Sbjct: 558 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGSNIVNLLQLAEGEKVTNMICQ 614

Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662
               D+    + + +K         E  AN RK        +E       ++T  H  + 
Sbjct: 615 SKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLI 674

Query: 663 VVGENRKLLIFS-IDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN 720
           V   N + + F+  D  P    G GVR     +G   +V+   IC EG T +        
Sbjct: 675 VATRNGQAIRFNEADARPMGRSGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTENGKG 732

Query: 721 RSENDLLGWLGKRGGVG 737
           R  +     +  RGG G
Sbjct: 733 RRSDIDTYRITARGGKG 749


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 243/716 (33%), Positives = 390/716 (54%), Gaps = 44/716 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  E ++ V L+  + E YL+YALS I ERA+PD+RDG KPVHRR+++AM + G      
Sbjct: 37  LTGERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 96

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 97  YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 156

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  ++  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 157 TECRMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNI 216

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ +     +D+P+ + E+LLE +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 217 PPHNLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATIL-GHKGIEQAYRTGR 275

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 276 GLITMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSG 334

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 335 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 392

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
           AH+ +V+ RR+++  +  + R  IL+G L A   IDE++A+I   R+ +  +  ++    
Sbjct: 393 AHQIDVVARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLMDLLD 452

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q  QI  +  E+
Sbjct: 453 VDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDILAKPERQ-RQIVGD--EL 509

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI S+  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 510 DEIVSRYGD--ERRTRILPYSGEMNV---EDLIAEENVVVTVTHAGFIKRTKADEYRAQH 564

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                +     +E D +       T + +L  +  G     KAY LP G+  S   H   
Sbjct: 565 RGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGSRDSKGQHVAN 624

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +       H Q +++   Y+    L++ +  G       SE  +  + G   +++ ++E 
Sbjct: 625 LLQFAPDEHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVRLMTDEN 684

Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDG 695
            +   ++ G       D + +V      L F    DQ+  M R   GV+   +++G
Sbjct: 685 GEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAGVQGMKFREG 740


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 20/618 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI+ + +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGIL-QGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR ++DK   K  +V +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ +S     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEESELLKVIKKELREIKKKYSTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++  SL+S+       +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L  L  +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKG 621
            Y   D     +++S  G
Sbjct: 598 AYKEIDPLKNFVLISKNG 615


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 261/764 (34%), Positives = 410/764 (53%), Gaps = 59/764 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+AM + G     ++ KSAR V + +G+
Sbjct: 23  MQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAMYDSGYRPERSYVKSARPVSDTMGQ 82

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQP+V RYPL+ GQGNFG+   D  AA RYTE +MT +A  +++
Sbjct: 83  FHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSRGNDGPAAMRYTECKMTPLAMEMVR 142

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + E+AVDF   Y+ +  EP V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ EA   
Sbjct: 143 DIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHNLGELAEAIYW 202

Query: 206 LIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           ++DN +     +++  +E + GPDFPT G+IV     I ++Y  GRG  R+R    +EEV
Sbjct: 203 ILDNHDADEKTTLDACMERVKGPDFPTAGMIV-GDSGIKDAYTTGRGSIRMRGVTEIEEV 261

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRS 319
           G     IV+TE+PY V     I  IAE + A ++  +  I DES++ V  RIV+  K  +
Sbjct: 262 GT-RQVIVITELPYNVNPDNFISGIAEQVAAGKMTGISKIEDESSDRVGMRIVVTLKRDA 320

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + P +++ +++  S +ET F  NM  L  G VP+ + LD +L+ ++AH+ EV+ RR+ FR
Sbjct: 321 V-PRVVLNNLYKHSPLETNFSANMLSLVDG-VPRTLRLDQMLRYYVAHQIEVIVRRTQFR 378

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           +   ++R  IL+GL+ A   +DE+IA+IR     D+ +  ++S   + E Q DAIL ++L
Sbjct: 379 LDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGLMSLLDVDEVQADAILAMQL 438

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE  +I  +L  + AE      +L   ++Q   +A E+REV     K  D   RR
Sbjct: 439 RRLAALERQKIVDDLAAIEAEIADYKDILAKPERQRAIVADELREV---VDKHGD--ERR 493

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEG 548
           T       A     ++ +I +E + V I+  G+         +S K     +     K+ 
Sbjct: 494 TKLVA---ATGDVTEEDLIARENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQD 550

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606
           D +K      T D IL  +  G+ Y L A  L  +GR   G+ +  L++    + I    
Sbjct: 551 DVVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVI 610

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLV-VKVTG--D 659
               Y     L++ +  G    V++S +    + +    + ++  E   L+   + G  D
Sbjct: 611 QIQTYQDAPYLVLATRDGR---VKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDD 667

Query: 660 HVAVVGENRKLLIFSID--QIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID 713
            + +V E  + + F+ D  Q+  M R     KG+R +    G    +    + +G   + 
Sbjct: 668 DILLVSEQGQSIRFTADDEQLRPMGRATAGVKGMRFR----GDDQLLAMTTVSDGQYLLV 723

Query: 714 SAGRSYNR----SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    Y +    +E +  G    RGG+G +  K  P+ GK + +
Sbjct: 724 ATSGGYGKRTPIAEYNPQG----RGGMGVMTFKYTPKRGKLIGA 763


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/621 (35%), Positives = 354/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AILN+RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  +EGD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++    D
Sbjct: 592 LQLE-KGEKVQTVINIPEGAD 611


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/761 (32%), Positives = 409/761 (53%), Gaps = 51/761 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +D+ E + E+LLE +I    GPDFPT G+IV  R  I ++YR GRG  
Sbjct: 191 NLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIV-GRSGIEDAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE++  + 
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F +NM  +  G VP+ + LD +++ ++ H+
Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMIRYYVEHQ 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
            +V+ RR+ ++++    R+ +L GLLIA  ++DE+I++IRN    D  +  ++ RF+L+E
Sbjct: 367 VDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMERFTLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E   L A   +++++L S  +Q   I  E+ EV E 
Sbjct: 427 IQATAILDMQLRRLAALERQRIIDEAAELRARISELEAILASPVRQRQIIGEELAEVVEK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D +   + +I +E + V ++  G+         RS +   
Sbjct: 487 FGDE-----RRTRLVPFE-GDMSI--EDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     +E D ++      T   +L  +  G+ Y   A  L   +    G+ +  ++ 
Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650
            + ++ I        Y+    L++ + +G       S+  +N   G   + +  ++++  
Sbjct: 599 FSQDERIAEVIALKDYEVAPYLVLATKRGLCKKTALSDFDSNRAGGLVAINLRDDDELIA 658

Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDVICF 703
            +LV    GD + +V  N + + F  D  Q+  M R      G+R  +  +    DV+  
Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVP 716

Query: 704 KICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGSLVPK 742
                L    S G +     +E  + G    RGG G L  K
Sbjct: 717 GTTADLLVATSGGYAKRTPLAEYPVQG----RGGKGVLTAK 753


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 361/613 (58%), Gaps = 27/613 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + N+  V L  A+ E YL YA+   ++RA+PD+RDG KPVHRRI++    +       +
Sbjct: 9   TDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGAHLLKAYPDRPY 68

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA RYT
Sbjct: 69  YKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSIDGDSAAAMRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +A  +L+ +D+D V+  + Y++ + EP V P+K+PNLL NG  GIAVG+AT+IP
Sbjct: 129 EARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVFGIAVGLATNIP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LA IDN +I+ ++L+ +I GPD PTGGI++  ++SI+ +Y  G G   +
Sbjct: 189 PHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILI-GKDSILSAYESGNGRVTL 247

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED 308
           RA+  +E++  G   +V+TE P++  K+RL++ I+E+   K+    +  + DIRDES   
Sbjct: 248 RAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGIADIRDESDRT 307

Query: 309 -VRIVL-FPKN-RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +R V+ F K+   +  D +++ +   ++++   P NM  ++ G+ P+ M L  +L  ++
Sbjct: 308 GIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGK-PETMGLRTMLWHYI 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++EV+ RR+   ++  +RR  I++G + A   +D+II  IR+          ++++F 
Sbjct: 367 EHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDASQNLIAKFD 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  AIL L L  L  LE    + E   L     K+ ++L+S ++  N I  E+ E+
Sbjct: 427 FTELQATAILELMLYRLTGLEITAFEKEYKELSKLIRKLKNILDSERELLNVIKQELLEI 486

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K+ ++ +     RRT   +     K  + + +I  E I + +SN G+I+ +   +     
Sbjct: 487 KDKYADA-----RRTQIIDDENEAKIDMDE-LIVVEDIVITLSNEGYIKRVPQKTYVRSN 540

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
            +   + ++EGD  +  + ++T + IL+ + +G  Y      +  L  +  GE +  +I 
Sbjct: 541 SNPQDIEYREGDYNRFIISSNTLETILVFTDNGNMYQFKGNAIPELRWKEKGERLDTIIK 600

Query: 596 -LNHNQD-IVTAF 606
            +N + + IVTA 
Sbjct: 601 GMNLDSERIVTAL 613


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L+  +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R    E++        + +I + 
Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGII   R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES  
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E VR+ +  + R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ 
Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409
           HR+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                  
Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417

Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442
                                  ED   P  +    +R+ L+ +QV+AIL+++L  L  L
Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500
           E+ ++  E   +L E  ++  +L+        +  E+ ++++ F   + TD+   R  F 
Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
             +R D       +I ++ + + +S  G+ ++         K      SA   KE D ++
Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606
             L   T   IL  +  G+ + L    + ++ RG  G  +  LI+L  ++ +VTA     
Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            + D    +   ++ G    V  S+  AN R G       +E    + V +T G+   ++
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705

Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688
             N  K + F    I  MSR  KGVR
Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/685 (34%), Positives = 383/685 (55%), Gaps = 41/685 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K +R+VG+V+G 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA RYTEARM  +A  +L+
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+   SEP+V PS+FPNLL NG  GIAVGMAT+IP HN+ E+ +    
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 206 LIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            +D+P+ +  +LLE +I    GPDFPT G+IV  R  I ++YR GRG  R+RA   VEE 
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIV-GRNGIEDAYRTGRGSIRMRAVVNVEE- 238

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRS 319
            +G   +VVTE+PYQV    L EKIAEL+   +I  + D+RDE++  +  R+V+  K R 
Sbjct: 239 NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLK-RD 297

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
               +++ +++  + ++  F +NM  +  G VP+ + LD I+  ++ H+ EV+ RR+ ++
Sbjct: 298 AVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQIISYYVEHQIEVIVRRTRYQ 356

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++    R+ +L GLLIA  ++DE+IA+IRN    D  +  ++ RFSL+E Q  AIL+++L
Sbjct: 357 LRKARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMERFSLSEIQATAILDMQL 416

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE  +I  E   L A+  +++++L S  +Q   I  E+ EV E +        RR
Sbjct: 417 RRLAALERQRIIDEAAELRAKVSELEAILASPARQREIIGQELAEVVEKYGDE-----RR 471

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEG 548
           T        D +   + +I +E + V ++  G+         RS K     +     +E 
Sbjct: 472 TRLVPFE-GDMSV--EDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALRED 528

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T   +L  +  G+ Y   A  L   +    G+ +  ++  + ++ I    
Sbjct: 529 DIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVM 588

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDH 660
               Y++   L++ + +G       ++  +N   G   + +  ++++   +LV    GD 
Sbjct: 589 AIQDYEAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAP--GDD 646

Query: 661 VAVVGENRKLLIFSID--QIPEMSR 683
           + +V  N + + F  D  Q+  M R
Sbjct: 647 LLLVSRNAQSIRFHADDEQLRPMGR 671


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/610 (36%), Positives = 346/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   F K AR+V
Sbjct: 11  ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVKCARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            + AL ++ N E +I++L+E I  PDFPTGGII      + + YR GRG   +RA+   E
Sbjct: 191 IDGALHVLRNAEATIDELIEIIPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E G+     I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAII+    P PV                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVAKVDLMSRAWDSSVVREMLART 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 GEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++++   +  +L   ++    I  E+   K  +       RR +   E++  D  T  + 
Sbjct: 488 VMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSS--IELNATDLGT--ED 543

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A+  KE D +     A+T D IL 
Sbjct: 544 LITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYILC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRMYWL 613


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L+  +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R    E++        + +I + 
Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/696 (31%), Positives = 393/696 (56%), Gaps = 24/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ ++ ++  + ++RDES  D   +   
Sbjct: 242 TDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             RR+   + ++  +      ++E+E   V ++  G+I+     S + S L     ++ D
Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L   +    GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEE-KMKLVVKVTGDH 660
           V D          + +G     E  E+    T + K+  + K+  +E ++  V  V  + 
Sbjct: 595 VVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKIKDQEDRIVAVAPVVFED 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + ++ +N   L F+I+++P + ++  GV+  + KDG
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 340/587 (57%), Gaps = 33/587 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPV RRI+++M + G      + K
Sbjct: 10  DRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSGFRPDRGYNK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE+
Sbjct: 70  CSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDPAAAMRYTES 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L  ++ED VDFRD Y+    EP V PS+FPNLL NG SGIAVGMAT+IP H
Sbjct: 130 RLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E  +  ++NPE + ++LL  ++    GPDFPT  +I+ +   I ++YR GRG  
Sbjct: 190 NLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGT-SGIEDAYRTGRGSI 248

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   +I  + DI DES     
Sbjct: 249 RMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADIADESNSRSG 308

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R     +++ ++F  + ++  F +NM  L +  VP+ + LD I++ ++ H+
Sbjct: 309 MRIVITIK-RDAVAKVVLNNLFKHTQLQQNFGVNMLAL-VDDVPRTLRLDQIIRHYVKHQ 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR   + D+ +P ++S   + E
Sbjct: 367 VDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGLMSLLEIDE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I   L  +  E   +  +L   ++Q + I  E+ E+ + 
Sbjct: 427 IQATAILDMQLRRLAALERQRIIDTLAEIELEIADLKDILEKPERQRSIIRDELMEIVDK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT        D     + +I +E + V I+  G+         RS K   
Sbjct: 487 YGDD-----RRTQIIPF---DGDVSVEDLIAQEDVVVTITRTGYAKRTKTDLYRSQKRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
             +     K+ D ++      T D IL  +  G     KAY LP  N
Sbjct: 539 KGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDLPEAN 585


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/719 (34%), Positives = 394/719 (54%), Gaps = 57/719 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  V LR  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G     A
Sbjct: 1   MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 61  FSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ +DED VDF   Y+ E  EP V P +FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN+ E+   AL  ++NP+ +     E LLE I GPDFPTG  ++++   I ++Y  GR
Sbjct: 181 PPHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDT-GGIKDAYLTGR 239

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +R    +EE+  G  C+VV E+PYQV    L  KIA L+   ++  + DIRDE++ 
Sbjct: 240 GSVVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSG 298

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+++  K R     +++ S++  + ++  F +NM  +  G  P+ + L   ++ W+
Sbjct: 299 RTGQRLIIVLK-RDAVARVVLNSLYKHTQLQENFGVNMLAIVDG-APRTLSLCSFIRLWV 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RR++FR+   ++R  IL+  L A   IDE+I +IR+    ++ +  +++   
Sbjct: 357 EHQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMALLK 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           + E Q  AIL+L+LR L  LE  +I S   E++ L++   KI   L+    Q   IA E+
Sbjct: 417 IDETQARAILDLQLRRLAALERQRIISEAREIEELISSFRKI---LSDKTAQCQVIAEEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWI-------- 530
           RE+ +  S +     RRT   E+ R  D +   + +I  EP+ VV++  G+I        
Sbjct: 474 REIGQKHSDA-----RRT---EIIRGFDGSVSIEDLIPVEPVVVVMTRCGYIKRTRIDQY 525

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
           RS       +     K  D +   +   T + ++  +  G     KAY +P     S   
Sbjct: 526 RSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEVPEA---SREA 582

Query: 586 HGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKT 640
            G+ +  L+ L  N+    I++   +DS    LV+++K + ++ + +  E   +   G  
Sbjct: 583 RGQHVANLLPLKPNEAVTRILSVSNFDSEDTSLVLATK-DGYVKKTTLKEYDTSLSTGVI 641

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
            +K+   +K+   V    D  + +V +N + L F    +  +SRG      SY   GIS
Sbjct: 642 AIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRG------SYGVKGIS 694


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 352/616 (57%), Gaps = 27/616 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A+KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K++LIE IAEL+   +I  + ++ DES
Sbjct: 240 GRGRVVMRAKAEIESDDNHDK-IVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDLK-RDSNANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLGLKDCVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E + L    +  + +L+  +     +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPELCKKVMKDELLE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           VKE +  +     RRT   E+  + +    +     +P+ + +S+ G+I        R  
Sbjct: 477 VKEKYGDA-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSDFREQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
               V       +E D  +    A     +L+ +  G+ Y L    +  G     G AIQ
Sbjct: 529 ARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFV 607
            ++++  + D V  F+
Sbjct: 589 NMLNIEKD-DAVNGFL 603


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+    EI +
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
           K  D   RRT     S        + +I +E + V ++  G+I+  K+            
Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586
           +     +E D +       T + +L  +  G     KAY LP G+  S   H        
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630

Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607
            GE IQ ++ +  N D+    V
Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/618 (33%), Positives = 366/618 (59%), Gaps = 20/618 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI+ + +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGIL-QGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR ++DK   K  +V +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++  SL+S+       +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L  L  +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKG 621
            Y   D     +++S  G
Sbjct: 598 AYKEIDPLKNFVLISKNG 615


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420
           FR++       I +G  +A  NIDE+I +I+ + D P+                 M+SR 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A  
Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + ID L    K +  +I   IRE  E+    T+ G  R +       D A   + +I + 
Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 346/591 (58%), Gaps = 32/591 (5%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S+++ L E+N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  R+ I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRDGIRETF 245

Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + G+G   +R    +E++   GR     +++TE+P+Q  K+ LIE+IA+L+  K++  + 
Sbjct: 246 KTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRDES  D +RIV+  K R   P +++ ++F L+ ++  F  N+  L  G  P  + L 
Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVEGE-PTTLSLR 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+       + 
Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++ +  I
Sbjct: 424 KLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINFYQQILNSKERIFEII 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534
             E+ ++   FS       R+T   ++    D   L    I  +   V+++  G+++ + 
Sbjct: 484 LEELNQIDGKFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534

Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  + ++           KE D +K+ +  +  D +LL S  G AY LPA
Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPA 585


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+    EI +
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
           K  D   RRT     S        + +I +E + V ++  G+I+  K+            
Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586
           +     +E D +       T + +L  +  G     KAY LP G+  S   H        
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFA 630

Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607
            GE IQ ++ +  N D+    V
Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGII   R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES  
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E VR+ +  + R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ 
Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409
           HR+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                  
Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417

Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442
                                  ED   P  +    +R+ L+ +QV+AIL+++L  L  L
Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500
           E+ ++  E   +L E  ++  +L+        +  E+ ++++ F   + TD+   R  F 
Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
             +R D       +I ++ + + +S  G+ ++         K      SA   KE D ++
Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606
             L   T   IL  +  G+ + L    + ++ RG  G  +  LI+L  ++ +VTA     
Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            + D    +   ++ G    V  S+  AN R G       +E    + V +T G+   ++
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705

Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688
             N  K + F    I  MSR  KGVR
Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420
           FR++       I +G  +A  NIDE+I +I+ + D P+                 M+SR 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A  
Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + ID L    K +  +I   IRE  E+    T+ G  R +       D A   + +I + 
Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I+        + +       A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGII   R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES  
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E VR+ +  + R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ 
Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409
           HR+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                  
Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417

Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442
                                  ED   P  +    +R+ L+ +QV+AIL+++L  L  L
Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500
           E+ ++  E   +L E  ++  +L+        +  E+ ++++ F   + TD+   R  F 
Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
             +R D       +I ++ + + +S  G+ ++         K      SA   KE D ++
Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606
             L   T   IL  +  G+ + L    + ++ RG  G  +  LI+L  ++ +VTA     
Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            + D    +   ++ G    V  S+  AN R G       +E    + V +T G+   ++
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705

Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688
             N  K + F    I  MSR  KGVR
Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 327/536 (61%), Gaps = 20/536 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  ++ + ++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 5   TGEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA
Sbjct: 65  DRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +D+  VDF+D Y+ ++ EPV+ P++FPNLL NG+SGIAVGMA
Sbjct: 125 PRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244
           T+IP HN++E+ E A   + NP  S E+LLE +I    GPDFPTG  I+   + I ++YR
Sbjct: 185 TNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQIL-GHKGIEDAYR 243

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE
Sbjct: 244 TGRGSITMRAVVNVEEI-QNRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIADLRDE 302

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++     R+V+  K R     +++ +++  + ++  F  NM  +  G VP+ + LD  ++
Sbjct: 303 TSGRTGQRLVVVLK-RDAVAKVVLNNLYKHTSLQDNFSANMLAIVDG-VPRTLSLDAFIR 360

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            W+AH+ EV+ RR+ F +   + R  IL+GLL A   +DE+IA+IR     D+ +  ++ 
Sbjct: 361 HWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARGGLID 420

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + + QV+AIL+++LR L  LE  +I+ E   L  E  + +S+L S  +Q   ++ E+
Sbjct: 421 LLGIDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSILASEDRQRTIVSEEL 480

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
            E+   F        RRT        D +   + +I +E + V I+  G+++  +S
Sbjct: 481 AEIVNKFGDE-----RRTQIMLGYDGDMS--MEDLIPEEEMVVTITRGGYVKRTRS 529


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 352/619 (56%), Gaps = 33/619 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI  E L+ +I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEIES-DESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVVLNKLFKMTQLQSSFSVNNIALVKGR-PRLLTLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIRN   P      +  RF
Sbjct: 357 VEHRHDVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ E
Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPEECKRVMKAELEE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           VKE F        RRT   E+   +     +     +P+ + +S+ G+I+          
Sbjct: 477 VKEKFGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
               V     + ++ D  +    A     +L  +  G     K Y +P G+  S    G 
Sbjct: 529 ARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTS---KGR 585

Query: 589 AIQLLIDLNHNQDIVTAFV 607
           AIQ L++++ + D V AF+
Sbjct: 586 AIQNLLNIDAD-DSVNAFL 603


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/711 (33%), Positives = 401/711 (56%), Gaps = 32/711 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+ NV   SL   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM E G  +   +
Sbjct: 6   VKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYNKPY 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSA+ VG VIG  HPHGD SVYD++VR++Q +    PLI  QGN G+ID D AAA RYT
Sbjct: 66  HKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ ++++ +LQ +D+D V++   +++E  EP V P++FPNLL NG +GIA G AT+IP
Sbjct: 126 EARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYATNIP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A++  I +P+ S+E+L++++ GPDFPTGGI++   + I ++++ GRG  RV
Sbjct: 186 PHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVM-GLDGIKQAFQTGRG--RV 242

Query: 253 RARWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
             R  VE V  R    I++ EIPY+V KS L++KI E+ + K+I  + D+RDES    +R
Sbjct: 243 LIRSKVEVVPLRTIKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGLR 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRR 369
           IV+  K  S D  +L    ++  + + +   N NV+++  + P  M L  +L  +++HR 
Sbjct: 303 IVVDLKKDSNDEQILN---YLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHRE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTEN 426
           +V+ RRS F ++    R  IL+GL+ A   +DEII IIR ++DK   K  ++ RF  TE 
Sbjct: 360 DVVIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIERFDFTEK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ +RL  L   +  ++K+E   L  +  +++ ++    +    +  E+ +V   F
Sbjct: 420 QAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELEKIIRDKSELHKVMVEELEKVNAEF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---L 543
           +      R      EV        ++AMI KE   + ++  G+I+ +   S + S+    
Sbjct: 480 NTP----RLSKIVHEVKEI--VIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDSMT 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
             K+ DSL     +HT   ++  +  G    +P   +   +    G  I   I ++ ++ 
Sbjct: 534 QRKDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEK 593

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSEEKMKLVVKVT 657
           I+ A+V D+    + V S     +++ +E+    ++ + K  T +K+   ++M + V ++
Sbjct: 594 IIAAYVLDAFKTGVHVVSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEM-ISVSLS 652

Query: 658 ---GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704
               D V +V E    L++ ++QIP +S + KGV+  +         IC +
Sbjct: 653 YKPDDQVILVSEQGYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASICIR 703


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGII   R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES  
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E VR+ +  + R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ 
Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409
           HR+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                  
Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417

Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442
                                  ED   P  +    +R+ L+ +QV+AIL+++L  L  L
Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500
           E+ ++  E   +L E  ++  +L+        +  E+ ++++ F   + TD+   R  F 
Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
             +R D       +I ++ + + +S  G+ ++         K      SA   KE D ++
Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606
             L   T   IL  +  G+ + L    + ++ RG  G  +  LI+L  ++ +VTA     
Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            + D    +   ++ G    V  S+  AN R G       +E    + V +T G+   ++
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705

Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688
             N  K + F    I  MSR  KGVR
Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/633 (35%), Positives = 362/633 (57%), Gaps = 58/633 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDNDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN++E+      L+ NP+++ + L++ I GPDFPT G I+  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +LK +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDG-APHFLTLKQMLKYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            H+ +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIR   + D  K  ++SRF 
Sbjct: 359 DHQEDVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISRFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQW 472
           L + Q  AIL++RL  L  LE  ++++E  +L          LA+ E+ID +        
Sbjct: 419 LDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIADYKDILAKPERIDQI-------- 470

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR 531
             I  E+ ++++ F        RRT   E+  ++  +++ + +IEK+ + + ++++G+I+
Sbjct: 471 --IYDELLDIQKRFGDE-----RRT---EIGASEVISIEDEDLIEKQNVLLTLTHKGYIK 520

Query: 532 SL-----KSHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------- 574
            +     K+ +     +  +  + GD  +  +++ T D +L  +  GK Y+         
Sbjct: 521 RMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYEIPEF 580

Query: 575 ------LPAGNLLSGRGHGEAIQLLIDLNHNQD 601
                 LP  NLL     GE IQ +I++    D
Sbjct: 581 GRTAKGLPIVNLLQLE-KGEKIQTVINIPEGAD 612


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 265/781 (33%), Positives = 419/781 (53%), Gaps = 52/781 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N+   +  + V ++  ++  ++ YA+S I  RA+PD+RDG KPVHRR+++ M + G
Sbjct: 1   MTGPNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +  KS+R+VG+V+G  HPHGD  +YD++VR+AQP+  RYP+I GQGNFG++  D 
Sbjct: 61  FRPDRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+TQ+A L+L G+ E  VD    Y+ +  EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+  A +  ++NPE S E+LLE     I GPDFPTG +IV  ++ I +
Sbjct: 181 GMATNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIV-GKDGIAD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   +EE  +G   +VVTE+PYQV    L+E IA L    +I  + DI
Sbjct: 240 AYRTGRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADI 299

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ +  R+V+  K R     +++ ++F  + ++T F  NM  +  G VP+ + LD 
Sbjct: 300 ADESSDRIGMRLVITLK-RDAVAKVVLANLFKHTALQTSFGANMLAIVDG-VPRTLRLDQ 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           ++  ++AH+ EV+ RR+ +R+   + R  IL+GL+ A   +DE+IA+IR   + ++ K  
Sbjct: 358 MISLYVAHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAG 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q  AIL+++LR L  LE  +I  E    LAE E++ + L     +  +  
Sbjct: 418 LMELLDVDEIQATAILDMQLRRLAALERQRIIDE----LAELERVIADLKDILAKPERQR 473

Query: 477 CEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             IR E+ E   K  D   RRT        D     + +I  E + V I+  G+ +  K+
Sbjct: 474 AIIRDELTEAVDKHGD--DRRTRLVPY---DGDVSVEDLIAVEDVVVTITRTGYAKRTKT 528

Query: 536 HSVDLSALHFKEGDSLKIA------LHAH-----TTDRILLLSTDG-----KAYTLPAGN 579
              DL     + G  ++ A      + AH     T D IL  +  G     KAY LP  N
Sbjct: 529 ---DLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEAN 585

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKG 638
             + RG   A  L    +     V    +      LV+++KG   +V++SE+ A ++ + 
Sbjct: 586 -RNARGQHVANLLAFQPDERIAEVIQIPHYQAAPYLVLATKGG--LVKKSELAAFDSNRA 642

Query: 639 KTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ-IPEMSRGKGVRLQSYK 693
              + V+  +  +LV  V      D + +  E + +   + D+ +  M R     L    
Sbjct: 643 GGIVAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPMGRATSGVLGMRF 702

Query: 694 DGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + G   +    + EG   + +  R Y  R++ D     G RGG G L  +   R GK + 
Sbjct: 703 NAGDELLSMSVVYEGAQVLVATERGYAKRTDIDEYPVQG-RGGKGVLTIQYDRRRGKLVG 761

Query: 753 S 753
           +
Sbjct: 762 A 762


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/630 (35%), Positives = 358/630 (56%), Gaps = 33/630 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V E ++   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+++AM + G      
Sbjct: 49  MVGERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 108

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 109 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 168

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 169 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 228

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+PE S E+LL+ +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 229 PPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 287

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 288 GLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSG 346

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 347 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWI 404

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ +V+ RR+++  +  + R  IL+GLL A   I+E+I +IR+    +  +P ++    
Sbjct: 405 NHQIDVVARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLMEFLD 464

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   +  E+   
Sbjct: 465 IDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQRRIVGDEL--- 521

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI +K  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 522 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIPEENVVVTVTHSGFIKRTKADEYRAQH 576

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 577 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 636

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 637 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 666


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 259/805 (32%), Positives = 423/805 (52%), Gaps = 89/805 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKSAR+V
Sbjct: 27  VNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSARVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM ++
Sbjct: 87  GDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRMDRL 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN+ E+
Sbjct: 147 AEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNMGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L LID+P+ ++  L+++I GPDFPT   I   RE I  +Y  GRG   +RAR  +E
Sbjct: 207 IDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT-GREGIARAYETGRGQITIRARTEIE 265

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +     R
Sbjct: 266 TSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIELKR 325

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++ ++F ++ +ET F   M  +  G+ P+ + L  +L  +++HRR+V+ RR+ +
Sbjct: 326 DAISGVVLNNLFSMTPLETTFGAVMLAIDGGQ-PRTLNLKELLDRFISHRRDVITRRTRY 384

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------ 414
            ++    R+ I++GLL+A   ID ++++IR    P                         
Sbjct: 385 ELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFGNLP 444

Query: 415 -----------PVMVSR--------FSL---------TENQVDAILNLRLRSLRKLEEYQ 446
                       ++VSR        F L         +E Q   IL +RL+ L  L+  +
Sbjct: 445 RIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQREE 504

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +  EL  L+ +  ++  +L       N I  E+++++  +       +RRT   E++   
Sbjct: 505 LFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGD-----KRRT---EITGEV 556

Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S+ G++        R+ K      +    KE D +     A 
Sbjct: 557 SEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVAS 616

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T   ++ ++T GK Y+L    +   S    G+AI  L+    ++ +    V   +     
Sbjct: 617 THAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPENRF 676

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENRK 669
           +  V+ KG   +V+ +++   AN R     + +  EE  +LV VK+T G    ++   + 
Sbjct: 677 VFFVTKKG---VVKRTDLSAFANVRV-SGIIALGIEEGDELVAVKITDGSKDVLLSTAQG 732

Query: 670 LLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDL 726
           + I F  +++  M R   GV+  +  DG   +V+   + E   T +      Y +   + 
Sbjct: 733 MSIRFPEEEVRSMGRQAYGVKGITLVDG--DEVVGADVVEKDATILTVTENGYGKRTQEA 790

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFL 751
              +  RGG G +  K   R+GK +
Sbjct: 791 EYRVQGRGGKGIIDIKTTERNGKVV 815


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 246/696 (35%), Positives = 384/696 (55%), Gaps = 45/696 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK HPH
Sbjct: 5   YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVD 148
           GD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +  + +L+ ++
Sbjct: 65  GDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLLEDIE 124

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ +  LALI 
Sbjct: 125 SETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLLALIA 184

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265
           NPE++  +L  Y+ GPDFPTGG I+  R  I E Y  GRG   +R    +E V   GR  
Sbjct: 185 NPELTDRELTGYVSGPDFPTGGQIL-GRRGIREMYETGRGSVTMRGVAAIETVEAKGRPD 243

Query: 266 W-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R   P +
Sbjct: 244 RDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAYPQV 303

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R E + RR+ + ++  +
Sbjct: 304 VLNNLFKLTPLQSNFSAYMLALVNGE-PVLLTLRKMLQVFLDFRVETIERRTRYLLRKAE 362

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL GLLIA  N+D IIA+IR   +    +  +V +F L+E Q DAIL ++LR L  
Sbjct: 363 ERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQFGLSEVQADAILQMQLRRLTA 422

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ E ++LLA+      +L   ++ +  I  E+  ++  +        RRT   +
Sbjct: 423 LEADKIRLEHEDLLAKITDYKDILARKERVYGLITDELGVIRSRYDSP-----RRTEILD 477

Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG------DSLK 552
           V    +  L+   +I  E   V+++  G+++ +     + ++     K G      ++++
Sbjct: 478 V----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTKTQGEEAVR 533

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI-----VTA 605
           + +  +  D +LL S  G  YT+PA    + S    G  I  L+ +   + I     V+ 
Sbjct: 534 LFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIVQLLPIPREEQITSLLAVSE 593

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662
           F  D+   +LV+ + G           AN R     + +S EE   L    +   GD V 
Sbjct: 594 FTEDA---VLVMLTSGGYVKRTRLSAFANIRS-NGLIAISLEEGDALTWVRLAQPGDSVL 649

Query: 663 VVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG 695
           +   N   + F  S +++  + R  +GVR  + + G
Sbjct: 650 IGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPG 685


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/594 (38%), Positives = 346/594 (58%), Gaps = 33/594 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++ + +L+ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+  + L++ I GPDFPTGG I+  R  I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQIL-GRSGIHEAYMTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR +   I++T++PYQ  KS LIE+IA+++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDES 300

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +RIV+  K R     +++ +I+  + ++  F  NM  L  G  PQ++ L   L  +
Sbjct: 301 DREGMRIVIELK-RDAHSRVVLNNIYKQTPVQANFGANMLALVKGE-PQLLTLKNFLTVF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           ++ R E + RRS + ++  + R  +L+GLLIA  ++D II+IIR+ D     K  ++ +F
Sbjct: 359 ISFRVETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q DAIL ++LR L  LE  +I +E   L  +   ++ +L+  ++    I  E+ +
Sbjct: 419 ELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDILSKKERIEAIIEEELVQ 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL- 540
           +K I       G  R T  E+   +   +   +I  E   ++++ +G+I+ +   S D  
Sbjct: 479 IKNIH------GTPRCT--EIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSSFDAQ 530

Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582
                  +    KE D ++  L     D +LL S  G      AY +P+ +  S
Sbjct: 531 QRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSSRTS 584


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/435 (45%), Positives = 281/435 (64%), Gaps = 8/435 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKLE 443
            AIL LRL  L  LE
Sbjct: 422 LAILELRLYQLTGLE 436


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 356/630 (56%), Gaps = 33/630 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E ++   LR  + + YL+YA+S I +RA+PD+RDG KPVHRR+I+AM + G      
Sbjct: 35  MTGERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRG 94

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 95  YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 154

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ E     +D+PE S E+LL+ +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 215 PPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
           +H+ +V+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     ++    
Sbjct: 391 SHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+   
Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 507

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
            EI +K  D   RRT     S        + +I +E + V +++ G+I+  K+       
Sbjct: 508 DEIVAKYGD--ERRTRILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  
Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFGPDEAIQTVLSIPNYEVAKYLVLATR 652


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/685 (34%), Positives = 385/685 (56%), Gaps = 28/685 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAMELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++EI +A  AL+
Sbjct: 138 DKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIIDACFALM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            NP +++ +L+  + GPDFPTGG I+   E I E+Y  G+G   +R++  +E+V  G   
Sbjct: 198 ANPSMTVAELMTIVRGPDFPTGGTIM-GEEGIREAYASGKGRIYIRSKAEIEDVRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPYQV KSRL+  +  + + KR+  + ++RDES  + +RIV+  K +  D   ++
Sbjct: 257 IVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELK-KDADAQGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  F  NM V  + + P+ + L  +L  ++ H++EV+  R+ F ++  + R
Sbjct: 316 AYLFKKTDLQVTFNFNM-VAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRTRFDLEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DEIIA I   +N    +  +VS+F  TE Q DAIL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSKFGFTERQADAILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             Q++ EL         + S+L S K+  + I  E+ E++  F     + RR     EV 
Sbjct: 435 ITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTKFG----IDRRSDIRGEVE 490

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + M++ E + + +S  G+I+     S      +L +   K+GD ++  L  +
Sbjct: 491 EL-KVNL-EVMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESAGVKDGDVVRHLLSVN 548

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----YD-ST 611
           T D +LL +  G+ + LP   +     + +G A+  +I L+  +D V   V    +D ++
Sbjct: 549 TIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLS-KEDSVIGIVPIRDFDQAS 607

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL ++ +G     E  E  +N        KV   +++  V++   +   ++   + + 
Sbjct: 608 ASLLFITKRGQVKRTELKEYKSNRSTAIAACKVGDGDEVIAVLESNSNQELLLVSRQGMA 667

Query: 672 I-FSIDQIPEMSR-GKGVRLQSYKD 694
           I F   ++  M R   GVR    KD
Sbjct: 668 IRFPETEVNPMGRVAAGVRGMQLKD 692


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/550 (39%), Positives = 330/550 (60%), Gaps = 23/550 (4%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F 
Sbjct: 10  RDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFS 69

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            R+ L+ GQGNFG++DGDSAAA RYTE R++++A  +L  + ++ VDF   Y+  + EP+
Sbjct: 70  LRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEPL 129

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V P++ PNLL NG++GIAVGMAT+IP HN+ E+ +A L L+ +PE SI+ L+E I  PDF
Sbjct: 130 VLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPDF 189

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEK 285
           PT GII      + + YR GRG   +RA+   E++ RG    I+V E+PYQV K  L E+
Sbjct: 190 PTAGIIY-GINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQER 248

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           +AEL+  K++  +  I+DES +    ++    R   P++++ +++  + ++  F +NM  
Sbjct: 249 MAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVA 308

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           L  G+ P++  L  ++  +L HRREV+ RR+ F ++    R  +L+GL +A  NIDE I 
Sbjct: 309 LVDGQ-PRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIR 367

Query: 406 IIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           IIR    P   K  ++S + L++ Q   IL +RL+ L  LE+ +I +E   ++A  E + 
Sbjct: 368 IIRESPTPPVAKAELMSLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVMAHIEDLL 427

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I  E+  V+E F + T LG RR+   E S  D +T  + +I    + V
Sbjct: 428 DILAKPERVSTIIGEELTAVREEFGQ-TKLGARRSEI-EHSAQDLST--EDLITPTDMVV 483

Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+I        R+ K       A   KE D +     A+T D IL  S  G+ Y 
Sbjct: 484 TLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGRLYW 543

Query: 575 L-----PAGN 579
           L     PAG+
Sbjct: 544 LKVWEVPAGS 553


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 347/611 (56%), Gaps = 27/611 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G     
Sbjct: 6   TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDK 65

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS AA R
Sbjct: 66  PYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMR 125

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAVGMAT+
Sbjct: 126 YTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATN 185

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG  I    + + ++Y  GRG  
Sbjct: 186 MPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYETGRGRV 244

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E        IV+TEIPY V K++LIE IAEL+   +I  + +  DES  + +
Sbjct: 245 VMRAKAEIES-DESHDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGM 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR 
Sbjct: 304 RIVIDVK-RDANANVILNKLFKMTALQSAFSVNNIALVNGR-PRLLSLKECVKYFVEHRH 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF+L E 
Sbjct: 362 DVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDEL 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EVKE +
Sbjct: 422 QSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT   E+  + +    +     +P+ + +S+ G+I        R      V
Sbjct: 482 GDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGV 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D  +    A     +L  +  G+ Y L    +  G     G AIQ L+++
Sbjct: 534 GSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNI 593

Query: 597 NHNQDIVTAFV 607
               D V AF+
Sbjct: 594 -EGDDQVNAFL 603


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLLARSWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L+  +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R    E++        + +I + 
Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/744 (32%), Positives = 397/744 (53%), Gaps = 81/744 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGII   R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------ 409
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+                   
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 410 ----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443
                                 ED   P  +    +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFCE 501
           + ++  E   +L E  ++  +L+        +  E+ ++++ F   + TD+   R  F  
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF-- 536

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKI 553
            +R D       +I ++ + + +S  G+ ++         K      SA   KE D ++ 
Sbjct: 537 -NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEH 588

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF----V 607
            L   T   IL  +  G+ + L    + ++ RG  G  +  LI+L  ++ +        +
Sbjct: 589 LLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDL 648

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
            D    +   ++ G    V  S+  AN R G       +E    + V +T G+   ++  
Sbjct: 649 KDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFS 707

Query: 667 NR-KLLIFSIDQIPEMSR-GKGVR 688
           N  K + F    I  MSR  KGVR
Sbjct: 708 NEGKAIRFKEQSIRAMSRVAKGVR 731


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/750 (33%), Positives = 406/750 (54%), Gaps = 48/750 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL YA+S I  RAIPD RDG KPV RR+++AM E+ +     +KK ARIVGE +GK
Sbjct: 10  IKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCARIVGETMGK 69

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ AE +++
Sbjct: 70  YHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQFAEDMME 129

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +DE+ V+FR  ++    EP   PSK PNLL NG+SGIAVGMAT++  HN+ EI +A   
Sbjct: 130 DIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLSEISDAIKY 189

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N   S++ LL+ + GPDFP GGI+  S++ ++E+YR G+G   V+      E  R  
Sbjct: 190 ELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKD-LIEAYRTGKGKVIVQGEVDTSEERR-- 246

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I++  +PY V KS L+E IA L     I  + DI+DES  + +RIV+  ++  L P L
Sbjct: 247 --IIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVRDEDLKP-L 303

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +M  ++  +D+ET   + +N++ +G  P+++ L  +L +++ HR +V+ +RS +R++  +
Sbjct: 304 VMNQLYEHTDLETTIGI-INLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRYRLEKKN 362

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R ++L G+L A  NID ++ I+R  D   K    +   F+L + QV AIL +RL+ L  
Sbjct: 363 ERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASETLKKTFNLNDRQVKAILEMRLQRLVH 422

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E   + +EL ++  E   +  ++ S +++   +  EI E+K+ +    D  R +  F E
Sbjct: 423 MERESVVNELKSIEKEIADLKEIIESEQKRIEVLEGEIDEIKKRYG---DKRRTKIKFKE 479

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHFKEGDSL 551
           +   +++T  + +I  E   +++S  G ++ +              V+ S    K  D++
Sbjct: 480 I--GERST--EDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRGGKGVNTS---MKISDTV 532

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VT 604
           K  +H  + D I   ++ G     KAY +P  +  S    G +    + L  N+ +  V 
Sbjct: 533 KSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTS---LGVSAGAFLKLQQNERVTEVM 589

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
               D    L++V+  G         +      G   + +  ++++     +  D ++ V
Sbjct: 590 KAPADRGEHLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDDELVSASTIDTDTNMFV 649

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD--VICFKICEGLTWIDSAGRSYN 720
           +    K  +F+  ++ E  R   GVR       G  D  V  F + EG   +  + + + 
Sbjct: 650 LSSKGKGSVFNTSEVRETGRSSMGVRSMRL---GEEDYVVTAFVVKEGQDILSISEKGFG 706

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  N     +  RG  G LV +   R+GK 
Sbjct: 707 KRTNLSEFPVHHRGSGGVLVYRDTERTGKI 736


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 247/765 (32%), Positives = 400/765 (52%), Gaps = 39/765 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V ++  L+  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 13  ERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D AAA RYTE 
Sbjct: 73  CARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L+ +D++ VDF   Y+   +EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 133 RLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +DN  +S E+LL+ +I    GPDFPT  +IV  R+ I ++YR GRG  
Sbjct: 193 NLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIV-GRKGIEDAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE++    
Sbjct: 252 TMRAVVEIEEI-QGRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTG 310

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 311 QRLVIVLKKDAI-AKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLRLDQFIRYWVDHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTE 425
            +V+ RR+ F ++  + R  IL+ LL A   I+E+IA+IR  +  +     +++   + E
Sbjct: 369 IDVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLMALLQIDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE   I  E + L+AE    + +L S ++Q   +  E+  + E 
Sbjct: 429 VQAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEILASPERQRRIVREELEPIVER 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT        D     + +I +E I V I+  G+         R  K   
Sbjct: 489 YGDE-----RRTQIVPF---DGDVSYEDLIPEEDIVVTITRGGYAKRTRVDAYREQKRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D ++      T   +L  +  G     KAY LP G   S   H   +  
Sbjct: 541 KGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGGRDSRGQHVANMLA 600

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMK 651
                H  +++    YD    L++ + +G        +  +    G   + ++  +E + 
Sbjct: 601 FQPEEHIAEVLDLRDYDVAPYLVLATRQGKVKKTALKDFDSPRTGGIIAINLAEGDEVIA 660

Query: 652 LVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708
             +    D + +VG N + + F  D  Q+  M R   GV    +  G + D+   +  + 
Sbjct: 661 ARLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDE 720

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + G    R+  +     G RGG G L  K     GK + +
Sbjct: 721 DVLVATEGGYAKRTPVEQYPVQG-RGGKGVLTAKIVQARGKLVGA 764


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 344/569 (60%), Gaps = 30/569 (5%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 6   SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 65

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 66  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 125

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 126 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 184

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 185 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 244

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+V+  + +  +  +++ +++  + ++T F +NM  L  GR P+++ L   L  +L H+
Sbjct: 245 VRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQ 302

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
           + V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M S   RF L+E
Sbjct: 303 KTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSE 362

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ 
Sbjct: 363 KQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDR 422

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV------ 538
           F        RRT   E+       L+ + +I +E I + +S+  +I+ L   +       
Sbjct: 423 FGDD-----RRT---EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRG 474

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              +  ++  E D +   +   T D +L  +  G+ Y L    +  LS +  G  +   I
Sbjct: 475 GRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAI 534

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSK 620
           +L +++ I T       +S    LV ++K
Sbjct: 535 ELENDEIISTMIAVKDLESEDNFLVFATK 563


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 350/612 (57%), Gaps = 56/612 (9%)

Query: 12  LVEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           L  +N K ++      ++   L YA+S I  RA+PD+RDG KPVHRRI++ + E GL   
Sbjct: 2   LYNDNSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            A++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG+IDGD  AAY
Sbjct: 62  KAYRKCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAY 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++   +L  ++++ VDF   Y++   EPVV PS+FPNLL NG+ GIAVGMAT
Sbjct: 122 RYTEAKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A   LI++P+ ++E+L+E+I GPDFPTGGII+  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIM-GKAGIRAAYATGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
             +R+R   EE+ +G  CI++ EIP+ ++K RL++ I +L+  KRI  L  IRDES +D 
Sbjct: 241 IILRSRTHFEEI-KGRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDG 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++ P++++  +F L+ ++    + M  L  G  P+++ L  +L+ +L  +
Sbjct: 300 MRVVIELKKDAM-PEIVLNKLFALTQLQDTVGIIMLALVNGE-PKILTLKQMLQHYLDFQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---- 421
            +V+ RR+ + ++    R  IL+G ++A   IDE+IAIIR+     + K  M+ RF    
Sbjct: 358 VDVIQRRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDVD 417

Query: 422 ---------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AI+ +RL  L  LE  +I  EL  LL +   
Sbjct: 418 MSALLDRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISD 477

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            + +L    + +  I  ++  +++ FS       RRT+   VS        + +I +E  
Sbjct: 478 FEDILADVNRVYGIIIDDLNTIRKKFSDD-----RRTSIENVS---GEVDIEDLIPEEDC 529

Query: 521 TVVISNRGWIRSL------KSH--SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570
            V ++N G+I+ +        H     ++ +  +E D +       + D +L +S  G  
Sbjct: 530 VVTLTNNGYIKRMPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIM 589

Query: 571 ---KAYTLPAGN 579
              K Y +P G+
Sbjct: 590 YKLKCYEVPDGS 601


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSVDGDGAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  +  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLHLLDAPETDIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI +L+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIADLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR-------------- 420
           FR++       I +G  +A  NIDE+I +I+ + D P  K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLARAWRSSLVEDMLGRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  +  N++A+ 
Sbjct: 437 DLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMAKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L   ++    I  E+ E+K  F      GR+     E++        + +I + 
Sbjct: 497 IDFLDILAKPERITQIIREELEEIKTGFGD----GRK----SEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/703 (33%), Positives = 393/703 (55%), Gaps = 25/703 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G  +  A++KS
Sbjct: 14  NVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTWDKAYRKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA RYTEAR
Sbjct: 74  AKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAAMRYTEAR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +++E +LQ +D+D V +   +++   EP V P+++PNLL NG +GIA G AT+IP HN
Sbjct: 134 LGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A++  I +P+ +++ L+E++ GPDFPTGG IV+  + I +++  G+G   VR++
Sbjct: 194 LGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGG-IVQGLDGIKDAFTSGKGRIMVRSK 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +    I+V EIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+  
Sbjct: 253 VSIEQT-KTVQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRNGLRVVID 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFR 374
             +  D  L++  ++  +D++  +  N NV+++  + P  M L  +L  ++AHRREV+ R
Sbjct: 312 LKKDADAQLILNYLYKNTDLQVSY--NYNVIAIKDKRPVQMGLAAMLDAFIAHRREVILR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAI 431
           RS+F +   ++R  IL+GL+ A   +DEIIA+IR ++DK   K  ++  F  +E Q +AI
Sbjct: 370 RSAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIEAFGFSEPQAEAI 429

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RL  L   +  Q++ E  NL AE +++  +L   K+    +  E++EVK+ F     
Sbjct: 430 VTMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAELKEVKKAFPTP-- 487

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH-FKEG 548
               R T  E    +    + AMI +E +   IS  G+++  S++S+     A+   KEG
Sbjct: 488 ----RLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDAMTGIKEG 543

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D L      +T D IL  ++ G    +P   +   +    G  I   I +  ++ I  AF
Sbjct: 544 DHLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAF 603

Query: 607 V---YDSTCKLLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           +   + +   ++ ++  G      + E E+  N +       +  +E ++  V    D +
Sbjct: 604 IVKDFKTNSYMISITRHGLVKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEI 663

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF 703
            +  +   +  + I  IP  S R KGV+  +  +  I+  + +
Sbjct: 664 LIASKKGYITRYPISLIPATSPRSKGVKAMNLVEDEIASALIY 706


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 314/556 (56%), Gaps = 53/556 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++AM EMGL     + K A++
Sbjct: 32  SINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCAKV 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG  +G  HPHGD ++YD++VRLAQPF  RYPL+ GQGNFG++DGD  AA RYTEAR+ +
Sbjct: 92  VGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARLMK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  ++  +D D VDF   Y+E   EP V P+++PNL+ NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNLTE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + L++NP   + ++LE++ GPDFPT G I   +  I  +YR GRG F +RA+   
Sbjct: 212 VINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIY-GKSGIANAYRTGRGKFLMRAKCSR 270

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +  G   I+V+EIPYQV K+ LI++IAEL+  K I  + D+RDES  D   ++    R
Sbjct: 271 ENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELKR 330

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++  +F  + M+  F +    +  GR P  +PL   ++ ++ HR +V+ RR++F
Sbjct: 331 TAQPEIVLNQLFKHTSMQESFSMIFLAVHNGR-PVELPLPDAIRAFIDHRVDVVRRRTAF 389

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------- 410
            +     R  IL G  IA  ++D +I  IRN                             
Sbjct: 390 LLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAG 449

Query: 411 ---DKPK--------PV----MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
              D  K        P+     V    L+  Q+D IL L+L  L +L   ++  EL  + 
Sbjct: 450 VTLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQVR 509

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               + +S+L S K+    I  E+ EV+E +        RRT    +  + + TL+  +I
Sbjct: 510 ENIAEYESILASDKKLRRVIIKELEEVREKYGDV-----RRTQI--IDESSELTLED-LI 561

Query: 516 EKEPITVVISNRGWIR 531
             E + V +S+ G+++
Sbjct: 562 ADEQVAVTVSHSGYLK 577


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/741 (33%), Positives = 389/741 (52%), Gaps = 48/741 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG V+G 
Sbjct: 24  IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A  +L 
Sbjct: 84  YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 144 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ID+PEI +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE   G 
Sbjct: 204 YIDDPEIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  +  ++
Sbjct: 263 TQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + ++    
Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 381

Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L  L  
Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL +L A+ E  +++L    +    +  E+ ++K+ F        RRT   E
Sbjct: 442 LEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDE-----RRT---E 493

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553
           +         + +I +E     ++  G+I R LK+           +S +  KE D ++ 
Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 553

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                T D +L ++  G     K YT+  G+  S    G  I  L+ L   + +      
Sbjct: 554 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGMNIVNLLQLAEGEKVTNMICQ 610

Query: 609 DSTCKLLVVSSKGNAFIVEESEII--------ANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
               +     S G   +V +  +I        AN RK        +E       ++T  H
Sbjct: 611 SKDAE----QSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 666

Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             + V   N + + F+ +    M R G GVR     +G   +V+   IC EG T +    
Sbjct: 667 DMLIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTE 724

Query: 717 RSYNRSENDLLGWLGKRGGVG 737
               R  +     +  RGG G
Sbjct: 725 NGKGRRSDIDTYRITARGGKG 745


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/741 (33%), Positives = 389/741 (52%), Gaps = 48/741 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG V+G 
Sbjct: 24  IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A  +L 
Sbjct: 84  YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 144 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 203

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ID+P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE   G 
Sbjct: 204 YIDDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  +  ++
Sbjct: 263 TQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + ++    
Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 381

Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L  L  
Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL +L A+ E  +++L    +    +  E+ E+K+ F        RRT   E
Sbjct: 442 LEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDE-----RRT---E 493

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553
           +         + +I +E     ++  G+I R LK+           +S +  KE D ++ 
Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 553

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                T D +L ++  G     K YT+  G+  S    G  I  L+ L   + +      
Sbjct: 554 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGMNIVNLLQLAEGEKVTNMICQ 610

Query: 609 DSTCKLLVVSSKGNAFIVEESEII--------ANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
               +     S G   +V +  +I        AN RK        +E       ++T  H
Sbjct: 611 SKDAE----QSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 666

Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             + V   N + + F+ +    M R G GVR     +G   +V+   IC EG T +    
Sbjct: 667 DMLIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTE 724

Query: 717 RSYNRSENDLLGWLGKRGGVG 737
               R  +     +  RGG G
Sbjct: 725 NGKGRRSDIDTYRITARGGKG 745


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 347/611 (56%), Gaps = 27/611 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G     
Sbjct: 6   TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDK 65

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS AA R
Sbjct: 66  PYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMR 125

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAVGMAT+
Sbjct: 126 YTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATN 185

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG  I    + + ++Y  GRG  
Sbjct: 186 MPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYETGRGRV 244

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E        IV+TEIPY V K++LIE IAEL+   +I  + +  DES  + +
Sbjct: 245 VMRAKAEIES-DESHDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGM 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR 
Sbjct: 304 RIVIDVK-RDANANVILNKLFKMTALQSAFSVNNIALVNGR-PRLLSLKECVKYFVEHRH 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF+L E 
Sbjct: 362 DVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDEL 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EVKE +
Sbjct: 422 QSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT   E+  + +    +     +P+ + +S+ G+I        R      V
Sbjct: 482 GDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGV 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D  +    A     +L  +  G+ Y L    +  G     G AIQ L+++
Sbjct: 534 GSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNI 593

Query: 597 NHNQDIVTAFV 607
               D V AF+
Sbjct: 594 -EGDDQVNAFL 603


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/587 (36%), Positives = 338/587 (57%), Gaps = 33/587 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G      + K
Sbjct: 12  DRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSMFDSGFRPDRGYNK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE+
Sbjct: 72  CSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTES 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L  ++ED VDF D Y+    EP V PS+FPNLL NG SGIAVGMAT+IP H
Sbjct: 132 RLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E  +  ++NPE + ++LL  ++    GPDFPT  +I+ +   I ++YR GRG  
Sbjct: 192 NLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGT-SGIEDAYRTGRGSV 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   ++  + DI DES     
Sbjct: 251 RMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGISDIADESNSRSG 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R     +++ ++F  + ++  F +NM  L  G VP+ + LD I++ ++ H+
Sbjct: 311 MRIVVTIK-RDAVAKVVLNNLFKHTQLQQNFGVNMLALVDG-VPRTLRLDQIIRHYVKHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR   + D+ +P +++   + E
Sbjct: 369 MDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARPALMTLLDIDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  EL  +  E   +  +L   ++Q   I  E+  + + 
Sbjct: 429 IQAVAILDMQLRRLAALERQRIIDELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDK 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT     S        + +I  E + V I+  G+         RS K   
Sbjct: 489 YGDD-----RRTKIIGFS---GDVTDEELIAVEDVVVTITRTGYAKRTKTDLYRSQKRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
             +     K+ D ++      T D IL  +  G     KAY LP  N
Sbjct: 541 KGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYELPEAN 587


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/597 (37%), Positives = 341/597 (57%), Gaps = 29/597 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ NT + E ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G
Sbjct: 1   MTDVNTPLVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD S+Y ++VRLAQP+  RY LI GQGNFG+   D 
Sbjct: 61  YRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDM 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++  +A  +++ +D+D VDF+  Y+    EP+V PS+FPNLL NG++GIAV
Sbjct: 121 PAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +     + NPE S E+LLE +I    GPDFPTG +IV  R  I +
Sbjct: 181 GMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIV-GRRGIDD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA   VEE  +G  C+VVTE+PYQV    L   IAE +   RI  + D+
Sbjct: 240 AYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADV 299

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES+  V  R+V+  K R     +++ +++  + ++T F  NM  L  G VP+ + LD 
Sbjct: 300 RDESSSRVGQRLVIVLK-RDAVAKVVLNNLYKHTQLQTTFGANMLALVDG-VPRTLRLDQ 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
            ++ ++AH+ EV+ RR+ + ++  + R  IL+ LL A   +DE+IA+IR           
Sbjct: 358 FVRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGG 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++   + E Q  AIL+++LR L  LE  QI  E D L+A      ++L S ++Q   + 
Sbjct: 418 LMALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAILASPERQRTIV- 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
               E+ EI SK    G  R T       D +   + ++ +E + V I+  G+       
Sbjct: 477 --FDELSEIVSK---YGDERKTEIIAYEGDMSI--EDLLAEEDMVVTITRGGYAKRTNTD 529

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
             R+ K     +     ++ D +       T   +L  +  G+ Y + A  L  SGR
Sbjct: 530 LYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSGR 586


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 351/622 (56%), Gaps = 44/622 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 223 CEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+    EI +
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
           K  D   RRT     S        + +I +E + V ++  G+I+  K+            
Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586
           +     +E D +       T + +L  +  G     KAY LP G+  S   H        
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630

Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607
            GE IQ ++ +  N D+    V
Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/650 (35%), Positives = 360/650 (55%), Gaps = 67/650 (10%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN +   +E + AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  
Sbjct: 4   SNDHQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ +   A L L+  PE  I +L++ I  PDFPTG  I      +   Y+ G
Sbjct: 183 MATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIY-GLTGVRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +RA+  +E +G+      I+V EIPYQV K++L+EKI EL+  K I  + ++RDE
Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+
Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---------------- 408
           L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+                
Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRA 420

Query: 409 -----------------NEDKPKPVMVSR------FSLTENQVDAILNLRLRSLRKLEEY 445
                             + +P+ +  +R      + L++ Q  AIL + LR+L  L++ 
Sbjct: 421 WQSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 480

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   L+A    +  +L   ++    I  E+ E+K  F        RR+        
Sbjct: 481 EIVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDE-----RRSEINAFGGG 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           D A   + +I    + V +++ G+I++  +              A   K+ D ++    A
Sbjct: 536 DIA--DEDLIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIA 593

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +T D ++  +  G     K Y LP G   S    G  I  +I L+ N+ +
Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNS---RGRPINNVIQLDENEKV 640


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 254/748 (33%), Positives = 406/748 (54%), Gaps = 42/748 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIVG+VIGK HPH
Sbjct: 20  YLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIVGDVIGKYHPH 79

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  ++E ++  ++E
Sbjct: 80  GDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEALSEEMMAELEE 139

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI +  LALIDN
Sbjct: 140 ETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEIIDGLLALIDN 199

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           P++S++ LL  + GPDFPTGG+I+  R  I  + R GRG   +R    +EE  R     I
Sbjct: 200 PDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVAEIEESTRADRMAI 258

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           ++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R  +P +++  
Sbjct: 259 IIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRDANPPVVLNR 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F  N   L   R P ++ L   L  +L+ R++V+ RR+ FR++    R  
Sbjct: 319 LYAQTPLQTSFGYNFVALVNQR-PMILSLREALVHFLSFRQDVVTRRTLFRLRKARERFH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL  A   +D+IIA+IR+   P      +V +F+ +E Q  AIL++RL+ L  LE  
Sbjct: 378 ILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMRLQRLTALERD 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E + +      ++ +L S  +    I  E   ++E +  +     RRT        
Sbjct: 438 KIDAEYEEVRLLIRGLEDILGSRSRLMAVIREEFTALRENYGDA-----RRTRIVP---E 489

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           D     ++MI  +P  + ++ +G+I+ +   +           S +  KE D++ I L  
Sbjct: 490 DGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTP 549

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDS 610
              + IL  +  GK Y + A  +  +     G+ ++  + L   + +     V +F  D 
Sbjct: 550 TAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPVRGFLPLAPEEKVTRMLNVASFEGDR 609

Query: 611 TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
           +   + V+      I++ + + A +   + G   L +   +++  V+    D HV V   
Sbjct: 610 SLVFVTVNG-----IIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVADADSHVLVATR 664

Query: 667 NRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
               ++F I ++ E  R   GVR ++  +D  ++D       + +  +   G  Y +  +
Sbjct: 665 RGMAILFPIHEVTEQGRTASGVRAIRLREDDRVADAEIVTETDPVAVVTEKG--YGKRLD 722

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   RGG+G  + +G  + G  +S
Sbjct: 723 VAKFRHQHRGGMGLKISRGAEKIGAVVS 750


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 243/752 (32%), Positives = 396/752 (52%), Gaps = 89/752 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N +   +E +  VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  
Sbjct: 4   ANDHQFAKETI-PVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN+++     L L+++PE  I++L++ +  PDFPTG  I      I   Y+ G
Sbjct: 183 MATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIY-GLTGIRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +R++  +E +G+      IVV EIPYQV KS+L+EKI EL+  K +  + ++RDE
Sbjct: 242 RGRVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R  + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+
Sbjct: 302 SDKDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQ-PRLLNLKQILNEF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR- 420
           L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+   + D  +  ++ R 
Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRA 420

Query: 421 -----------------------------------FSLTENQVDAILNLRLRSLRKLEEY 445
                                              + L++ Q  AIL + LR+L  L++ 
Sbjct: 421 WQSALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQD 480

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E  +L+     +  +L   ++    I  E+ E++  F        RR+        
Sbjct: 481 EIVKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDE-----RRSEINPFGGG 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           D A   + +I    + V +++ G+I++  +              A   K+ D ++    A
Sbjct: 536 DIA--DEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVA 593

Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607
           +T D ++  +  G     K Y LP G   S    G  I  +I L+  + +     V  F 
Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNS---RGRPINNVIQLDDGEKVSAILPVREFP 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            D    +   ++ G    V+ S     + KG   + +   + +  V K +G        +
Sbjct: 651 EDEY--VFFATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSG--------S 700

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             +++FS       + GK +R   Y  GG  D
Sbjct: 701 SDIMLFS-------NLGKAIRFNEYWAGGAGD 725


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/661 (32%), Positives = 377/661 (57%), Gaps = 34/661 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  +++   ++  Y  Y++S I  RA+PD+RDG KPVHRR+++ M E G  F   ++
Sbjct: 4   KEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKNYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTE
Sbjct: 64  KSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P 
Sbjct: 124 IKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA  + ID  +ISIE+L++YI  PDFPTGGII    E + + +  GRG   +R
Sbjct: 184 HNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIY-GYEGVKKYFLTGRGKILLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++   EE+     C++V EIPYQ+ K  LI K  +L+   ++  L +IRDES  +   ++
Sbjct: 243 SKVHFEEIN-NRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   +++D   L+ ++F  + +ET F +N   L  G+ P ++ L  ++K ++ HR +V+ 
Sbjct: 302 YNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGK-PTILNLKDLIKHFVNHRHDVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVD 429
           RR+ + +     R  I++G  I   N++ +I +I++     D  K +++ +++L+E QV 
Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILI-KYNLSEIQVK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           +IL L+L SL KLE  +IK E  ++  +   +  ++++   Q   I  E+  VK   +K 
Sbjct: 420 SILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKIISNKFLQKKIIKKELNIVK---TKY 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
            DL R    +  +            +      + I+N G+I+    +   +   +  + +
Sbjct: 477 GDLRRTEINYLGLENE---------VYNNKFVITITNTGYIKKNYLNKYKIGVTYKCKKN 527

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           +L+  + A     IL    +GK + L    +  +  +  G+AIQ LI +N  + I ++ +
Sbjct: 528 NLEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVLKKSKGQAIQNLIKINKKEKICSSIL 587

Query: 608 --------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y +   +++++  G   I++++ +I   +  K  +K+ +++ + +  K+T +
Sbjct: 588 IEKNNDKKYLNKNYVILITKNG---IIKKTTLIQYYKNPKNLIKIINKDYI-IYAKLTNE 643

Query: 660 H 660
           +
Sbjct: 644 N 644


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           KIA+L+   ++  + DIRDE+++    RIV+  K R   P +++ +++  + ++  FP N
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE
Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418

Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +IA+IR     +  +  ++    + E Q DAIL L+LR L  LE  +I  E   L A+  
Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E 
Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530

Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V I+  G+         RS       +     +E D ++      + D +L  +  G 
Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590

Query: 571 ----KAYTLPAGNLLSGRGH 586
               KAY +P G   S   H
Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLSRSWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L+  +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R    E++        + +I + 
Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 378/709 (53%), Gaps = 54/709 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +       +KK AR+V
Sbjct: 3   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 63  GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E ++  +D+D VD  + +++   EP V P++ PNLL NG +GIAVGMAT++P+HN++E+
Sbjct: 123 GEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLREV 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            E   A IDNPEI +++L+++I  PDFPTG  I    + + ++Y  GRG   +RA+  +E
Sbjct: 183 IEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIY-GLQGVKDAYETGRGRIIIRAKAEIE 241

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
                   IVVTEIPY V K +LIE IA L+   ++  + ++ DES  + +RIV+  K R
Sbjct: 242 S-DESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIK-R 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRHDVTIRRTKF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435
            ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF L   Q  AI+++R
Sbjct: 359 ELKKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKRFDLDNLQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+ +E D L      ++++L+  +     +  E+ EVKE +        R
Sbjct: 419 LSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCKKVMKDELNEVKEKYGDD-----R 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547
           RT          A   +     +P+ + +S+ G+I        R      V       ++
Sbjct: 474 RTKIIPDEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGATHRD 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y L   N+  G     G AIQ L++++ +      
Sbjct: 531 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAIQNLLNIDSD------ 584

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GD 659
              D+   +L +    +   +    ++  T+ G   KT L+  S  +   V+ +    GD
Sbjct: 585 ---DAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIAEGD 641

Query: 660 HVAVV----GENRKLLI--------FSIDQIPEMSR-GKGVRLQSYKDG 695
            V  V    GEN  ++         F  + +  M R   GVR     DG
Sbjct: 642 EVVDVRLTNGENELIMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDG 690


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 356/617 (57%), Gaps = 55/617 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K +
Sbjct: 13  IDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRQFSKCS 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D AAA RYTE +M
Sbjct: 73  RVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDDPAAAPRYTECKM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +DEDAVDF+D Y+    EP V PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 133 APLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 192

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+       +++P+ S E+LLE ++    GPDFPT   I+  R+ I E+YR GRG   +
Sbjct: 193 REVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATIL-GRKGIEEAYRTGRGSITM 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + DIRDE++     R
Sbjct: 252 RAVVEVEEI-QGRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGIADIRDETSGRAGQR 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + +D  ++ W++H+ +
Sbjct: 311 LVIVLKRDAV-AKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDAFVRHWVSHQID 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  +  + I +G L A   +DE+IA+IR   + ++ +  ++    + E Q
Sbjct: 369 VIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARNGLMELLGIDELQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AILNL+LR L  L+  +I    D L A+  +++++L S ++Q   ++ E+  V + F 
Sbjct: 429 AQAILNLQLRRLAALQRQEIMDRHDALEADITELNAILGSPERQRTIVSEELATVVDKFG 488

Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
                  RRT       EVS  D       +I +E + V I+  G+         R+ + 
Sbjct: 489 DE-----RRTHILPFDGEVSIED-------LIAEEDVVVTITRGGYAKRTRVDAYRAQRR 536

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLP----------AGN 579
               +     +E D L       TT R LL  T+       KAY LP            N
Sbjct: 537 GGKGVRGAQLRE-DDLVDHFFVTTTHRWLLFFTNLGRVYRAKAYELPEAGRDAKGQHVAN 595

Query: 580 LLSGRGHGEAIQLLIDL 596
           LL+ +  GE I  ++DL
Sbjct: 596 LLAFQ-PGEKIAQVLDL 611


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/634 (35%), Positives = 359/634 (56%), Gaps = 44/634 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    +AF K
Sbjct: 30  DRVEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSK 89

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRL QP+  RYPL++GQGNFG+   DSAAA RYTE 
Sbjct: 90  CARVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTEC 149

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +D+D VDF D Y+    EP++ P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 150 KMAPLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPH 209

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ + E+LL  ++    GPDFPTG  I+  R  I ++YR GRG  
Sbjct: 210 NLREVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHR-GIEDAYRTGRGSI 268

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VVTE+PYQV   RL  KI E++   RI  + D+RDE++    
Sbjct: 269 TMRAVVEVEEI-QGRQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAG 327

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W  H+
Sbjct: 328 QRLVIVLKRDAV-AKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSLDAFVRHWTMHQ 385

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ + +   +RR+ IL+GLL A   +DE+IA+IR   + D+ +  ++    + E
Sbjct: 386 IDVIVRRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLMELLEIDE 445

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE+ +I  E   + A       +L S ++Q + +  E+  + E 
Sbjct: 446 VQATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDILASEERQRSIVRSELGAIVER 505

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           +        RRTT       D     + +I +E + V I+  G+ +  ++ +        
Sbjct: 506 YGDE-----RRTTILPF---DGEMSVEDLIPEEDVVVTITRGGYAKRTRTDNYRAQRRGG 557

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590
             +     +E D +       TT   LL  T+       K Y LP G    GR   G+ +
Sbjct: 558 KGVRGAQLREDDVVD-HFFVTTTHHWLLFFTNLGRVYRAKGYELPEG----GRDAKGQHV 612

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             L+     + I        YD    L++ + +G
Sbjct: 613 ANLLAFQPGEKIAQVLALRDYDQADYLVLATKRG 646


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVAVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P +S +  GV+  + K  D   +  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVSAKAAGVKAMNLKADDALQAAFIC 700


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           KIA+L+   ++  + DIRDE+++    RIV+  K R   P +++ +++  + ++  FP N
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE
Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418

Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +IA+IR     +  +  ++    + E Q DAIL L+LR L  LE  +I  E   L A+  
Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E 
Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530

Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V I+  G+         RS       +     +E D ++      + D +L  +  G 
Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590

Query: 571 ----KAYTLPAGNLLSGRGH 586
               KAY +P G   S   H
Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 239/699 (34%), Positives = 382/699 (54%), Gaps = 46/699 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+
Sbjct: 10  ATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  
Sbjct: 70  VGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESRLRP 129

Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++   +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 130 LSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPHNLG 189

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ + A+ALI NPEI+ ++L++ I GPDFPTG  I+  R  I E+Y  GRG   +R    
Sbjct: 190 EVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTGRGSITMRGVAS 248

Query: 258 VEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +E +   GR     I+VTE+PYQ  K+ LIE+IA+L+  K+I  + DIRDES  D   ++
Sbjct: 249 IETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMRIV 308

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + +++ F  N+  L  G  P+V+ +   L  +   R E + 
Sbjct: 309 IELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNG-TPEVLTIKKFLTVFWEFRIETIT 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  +L+GLLIA  N+D +I +IR   +    K  +V  FSL+E Q DA
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFSLSEVQADA 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL ++LR L  LE  +I +E D L  +      +L   ++    I  E+ ++K I +   
Sbjct: 428 ILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATP- 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542
               RRT   +    D   +   +I  +   ++++ +G+I+ + + +           +A
Sbjct: 487 ----RRTVIVQ---EDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKAA 539

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600
              K+ D ++  L     D++L  S  G  Y+L A    + S    G  I  ++ +  ++
Sbjct: 540 AKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKDE 599

Query: 601 DI---VTAFVYDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            I   V+   +D     ++++ +G       +AF    S I AN   G   + +   +++
Sbjct: 600 KITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAF----SNIRAN---GLIAISLVEGDQL 652

Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR 688
           + V     +   ++G  + + I F  DQ    + G+  R
Sbjct: 653 RWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATR 691


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 327/607 (53%), Gaps = 52/607 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRII+AM E G      + K
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+G+ HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD  AA RYTE+
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AE ++  +++  +DF D Y+    EP V PS+ PNLL NG  GIAVGMAT+IP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A LA++D+P +S+E LL  + GPD+PTGG I+  R     +   GRG    R 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEIL-GRSGARLALMTGRGSVVTRG 267

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E + +    IV+TEIPYQV KS +IE IAEL+  KRI  + D+RDES      V+ 
Sbjct: 268 KASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVV 327

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++  ++  + ++T F +NM  L  GR PQ M L  +L  +L  R +V+ R
Sbjct: 328 ELKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGR-PQQMGLRRLLDIFLDFREDVVVR 386

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVM 417
           R  F +     R  +L G+ IA  NIDE+I IIR+   P                  P++
Sbjct: 387 RIRFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLI 446

Query: 418 ------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                        ++  LT+ Q  AIL L L  L  L   +I  E   L +       +L
Sbjct: 447 DLIADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEIL 506

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    +  E+ EVK  F+       RRT   E   ++     + +I +E + V ++
Sbjct: 507 SSRERIMAIVREELVEVKAQFAVP-----RRTQIAE---SEGDIEDEDLIPREDMVVTVT 558

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G++        R         S +  K+ D++     A T   +L  S+ GKA+    
Sbjct: 559 HSGYVKRTPLSMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKV 618

Query: 575 --LPAGN 579
             LP GN
Sbjct: 619 WRLPVGN 625


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 345/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   F K AR+V
Sbjct: 11  ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVKCARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++
Sbjct: 71  GETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            + AL ++ N + ++++L+E I  PDFPTGGII      + + YR GRG   +RA+   E
Sbjct: 191 IDGALHVLRNADATVDELIEIIPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E G+     I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R
Sbjct: 250 EFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NID+ IAII+    P PV                 M++R 
Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVAKVDLMSRAWDSSVVREMLART 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 GEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L   ++    I  E+   K  +       RR T   E++  D  T  + 
Sbjct: 488 VMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRST--IELNATDLGT--ED 543

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G++        R+ K       A+  K+ D +     A+T D IL 
Sbjct: 544 LITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRLYWL 613


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/684 (34%), Positives = 368/684 (53%), Gaps = 63/684 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    A+ K 
Sbjct: 5   DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKC 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD SVY +LVR+AQ F     L+ GQGNFG++DGD  A+ RYTEA+
Sbjct: 65  ARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP HN
Sbjct: 125 MAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +AA+AL+D+P++S + LL+ + GPDFPTGG I+  R +   + R GRG   VR +
Sbjct: 185 LREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIM-GRTAPRNALRDGRGSVIVRGK 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             +EE+ +    I++TE+P+QV K  LIE+IAE++  KR+  + D+RDES    +RIV+ 
Sbjct: 244 ASIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIE 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R    D+++  ++  + +++ F +NM  L+ GR P+ M L  +L+ +L  R EV+ R
Sbjct: 304 LK-RDASGDVILNQLYRYTALQSSFGVNMLALNHGR-PEQMGLRKLLELFLDFREEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------------------- 413
           R  F +     R  +L GL +A  NIDE+I IIR+   P                     
Sbjct: 362 RVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALV 421

Query: 414 ------KPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                 + V+V   +  LT+ Q  AIL L L  L  L    I  E   L    +   ++L
Sbjct: 422 ELIADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTIL 481

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +  K     I  ++  VK+ F        RRT   E    D     + +I +E + V ++
Sbjct: 482 SDRKNVLAIIREDLLLVKDQFGVD-----RRTLIGE---GDAEMEDEDLIPREDMVVTVT 533

Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574
           + G+++ +  ++           S +  K+ D +     A T   +L  +T+GKAY    
Sbjct: 534 HSGYVKRVALNAYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKT 593

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIV 626
             LP GN  S    G+A   L+ +     I  V     D T      ++  +  G+    
Sbjct: 594 WRLPLGNPQS---RGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRN 650

Query: 627 EESEIIANTRKGKTFLKVSSEEKM 650
           + S+     R GK  +K+   + M
Sbjct: 651 KLSDFATVNRAGKIAMKLEDGDGM 674


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 337/588 (57%), Gaps = 26/588 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +   GR     I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKEFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR   +    K  +V  F 
Sbjct: 360 DFRIETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ +   + +   
Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                 +A   K+ D ++  L     D++L  S  G  Y + A  + S
Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPS 579


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +RA+   E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  +IDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLLSRSWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L+  +I     NL+ + 
Sbjct: 437 GLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R    E++        + +I + 
Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/761 (32%), Positives = 407/761 (53%), Gaps = 51/761 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S  +LLE +I    GPDFPT G+IV  R  I E+YR GRG  
Sbjct: 191 NLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIV-GRNGIEEAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   R+  + D+RDE++  + 
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDETSARIG 308

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F +NM  +  G VP+ + LD +++ ++ H+
Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMVRYYVEHQ 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
            +V+ RR+ ++++    R+ +L GLLIA  ++DE+I +IRN    D  +  ++ RFSL+E
Sbjct: 367 IDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMERFSLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E   L A+   ++++L S  +Q   I  E+ EV E 
Sbjct: 427 IQATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAILASPTRQRQIIGEELAEVVEK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D +   + +I +E + V ++  G+         RS +   
Sbjct: 487 FGDE-----RRTRLVPFE-GDMSI--EDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     +E D ++      T   +L  +  G+ Y   A  L   +    G+ +  ++ 
Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650
              ++ I        Y++   L++ + +G        +  +N   G   + +  ++++  
Sbjct: 599 FGQDERIAEVIAVKDYEAAPYLVLATKRGLCKKTALHDFDSNRAGGLVAINLRDDDELIA 658

Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDVICF 703
            +LV    GD + +V  N + + F  D  Q+  M R      G+R  +  +    DV+  
Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVP 716

Query: 704 KICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGSLVPK 742
                L    S G +     +E  + G    RGG G L  K
Sbjct: 717 GTTADLLVATSGGYAKRTPLAEYPVQG----RGGKGVLTAK 753


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/578 (37%), Positives = 335/578 (57%), Gaps = 25/578 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP+V P+++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++EI  A + +IDN     E +IE+LLE + GPDFPTG +I+ +R  I E+YR GRG  
Sbjct: 187 NMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTR-GIEEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + ++RDES  +  
Sbjct: 246 RVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESDREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R ++ ++++  ++  + ++  F + M  L +   P+V+ L  +L  +L H+ E
Sbjct: 306 RICIELRRDVNANVILNQLYKHTQLQDTFGVIMLAL-VNNQPKVLTLLEMLSYYLKHQEE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR ++ +     R  IL+GLL A   IDE+I IIR   N    K  ++ RF   + Q
Sbjct: 365 VVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIERFEFDDIQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  +++ E   L     + +++L   K     I  EI+ + + F 
Sbjct: 425 AQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAILADEKLLLGVIKGEIQVINDKF- 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539
                G  R T       D +   + +I  E   + ++  G+I+ +   +          
Sbjct: 484 -----GDERRTSIGFDEFDIS--MEDLIPDENTVIAMTRLGYIKRMTIDNFKSQHRGGKG 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +  +   + D ++      T   I+  +  G+ Y L A
Sbjct: 537 IKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKA 574


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 236/660 (35%), Positives = 380/660 (57%), Gaps = 38/660 (5%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG
Sbjct: 61  SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I
Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  + 
Sbjct: 180 HKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGIT 239

Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            +RDES  E VR V+  K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L 
Sbjct: 240 AVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLR 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + + 
Sbjct: 298 QILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQA 357

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I
Sbjct: 358 ELMSKFKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQII 417

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL- 533
             E+ EVK  FS      +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L 
Sbjct: 418 KDELDEVKRKFSD-----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLD 469

Query: 534 -------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR- 584
                  K     +     K+ D ++  +   T D +L  +  G+ Y L    +   GR 
Sbjct: 470 QDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRT 529

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK- 637
             G  +  L+ L+ ++ I T    +S       L   +  G   IV+ + +   AN R+ 
Sbjct: 530 AKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQN 586

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
           G   L +  E+++  V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 587 GLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 646


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  E  NL+++ 
Sbjct: 437 DLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ ++K  F        RR+   E++        + +I + 
Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 342/610 (56%), Gaps = 61/610 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 131 AHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATNIPPHNLNEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ NPE SIE+L+E I  PDFPT GII      + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLMKNPEASIEELMEIIPAPDFPTAGIIY-GINGVREGYRTGRGKVVMRAKVHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +    ++    R
Sbjct: 250 DIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +L+ +L HRREV+ RR+ F
Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALIDGQ-PKLCNLKQLLEIFLEHRREVVTRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420
            ++    R  +L+GL +A  NIDE I  I+N   P PV                 M++R 
Sbjct: 369 ELRKARDRGHVLEGLAVALANIDEFIETIKNSPTP-PVAKLALMSKSWDSSVVREMLTRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+++Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L    +    I  E+  V++ F +S  +G RR+    V    +    + 
Sbjct: 488 VMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSK-IGVRRSV---VEHNVQELGTED 543

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I        R+ K       A   K+ D +     A+T D +L 
Sbjct: 544 LITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWMLC 603

Query: 566 LSTDGKAYTL 575
            S  G+ Y L
Sbjct: 604 FSNRGRVYWL 613


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           KIA+L+   ++  + DIRDE+++    RIV+  K R   P +++ +++  + ++  FP N
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE
Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418

Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +IA+IR     +  +  ++    + E Q DAIL L+LR L  LE  +I  E   L A+  
Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E 
Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530

Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           + V I+  G+         RS       +     +E D ++      + D +L  +  G 
Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590

Query: 571 ----KAYTLPAGNLLSGRGH 586
               KAY +P G   S   H
Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 354/630 (56%), Gaps = 40/630 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 21  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQP+  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 81  RVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IPSHN+
Sbjct: 141 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHNM 200

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +EI E     +++PE S E+LL  +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 201 REIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 260 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQR 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W+ H+ +
Sbjct: 319 LVLVLK-RDAVPKVVLNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWINHQLQ 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     ++ +  ++    + + Q
Sbjct: 377 VVERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLMDLLDVDQIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + LL   E  + +L    +Q   +  E+ E+ + + 
Sbjct: 437 ADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDILAKPDRQRKIVGDEMDEIVDKYG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT     S        + +I +E + V +++ G+I+  K+            
Sbjct: 497 DD-----RRTKILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
           +     +E D +       T + +L  +  G     K Y +P G+  S    G+ +  L+
Sbjct: 549 IKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGSRDS---KGQHVANLL 605

Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621
            L  +   Q +++   Y +   L++ +  G
Sbjct: 606 QLGPDEKIQQVLSIKDYQTASYLVLATRSG 635


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D      V +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFIC 700


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
 gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana]
          Length = 950

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +KK AR+VGEV+GK H
Sbjct: 112 ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE R+  +AE ++L  
Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ +   AL
Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NPE ++++LLEY+  PDFPTGGII+     ++++YR GRG   VR +  VE +   + 
Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350

Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +   V+    R  DP L
Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  V+ RR+ F++    
Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  I++G+++   N+DE+I +I            + S + L+E Q +AIL + LR L  
Sbjct: 470 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 529

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS       RR+   +
Sbjct: 530 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 584

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
               D   +   +I  E + + +S +G+++ +K+ + +L        S    +  D++  
Sbjct: 585 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603
            L  H  D +L  S  G     +AY +P     S    G  +  ++ ++  + +     V
Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660
           + F  D    +L V    N  I + S ++ +  R  G   ++++S +++K V   + D  
Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
           VA+  +N  + + + D +  +SR  KGV     K+
Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 790


>gi|332705056|ref|ZP_08425141.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
 gi|332356233|gb|EGJ35688.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
          Length = 846

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 245/706 (34%), Positives = 388/706 (54%), Gaps = 51/706 (7%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPERPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +A   +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQAIATNALLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ +  +A+I NPEI+
Sbjct: 121 FVDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLVAVIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG-RG---SWCIV 269
            ++L  YI GPDFPTG  I+ +   I ++Y  GRG   +R    +E +G RG      I+
Sbjct: 181 DKELRRYIPGPDFPTGAQILGT-SGIKDAYTSGRGSITMRGVAEIETIGQRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES  +   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKASLIEKIAELVNDKRIDGISDIRDESDRNGMRIVIELKRDAYPKVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L +G  PQ++ +   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLAL-VGNEPQLLTIKQFLNVFLDFRIETITRRTQYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D +IA+IR   +    +  +V+ FSL+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E + L      +  +L    +    I  E +++K+ F+       RRT   +V    
Sbjct: 419 IQAEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATP-----RRTQIQQVEGEL 473

Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558
             T    +I  E   ++++ +G+I        R+    +   +A   K+ D ++      
Sbjct: 474 DDT---DLIANEKAVILLTEQGYIKRMPVDEFRAQARATRGKAAARIKDDDEVEHFFTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDST 611
             D IL  S  G  Y+L A  +  +S    G  I  ++ + H + I     V+ F  D  
Sbjct: 531 DHDSILFFSDRGVVYSLRAYQIPAVSRTARGVPIVQMLPIPHEEKITSIVPVSEFTDDEY 590

Query: 612 CKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             L++++ KG       +AF    S+I AN   G   + +   ++++ V++   +   ++
Sbjct: 591 --LVMLTHKGYIKKTALDAF----SKIRAN---GLIAISLGEGDQLRWVLRAREEDSIII 641

Query: 665 GENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKICEG 708
           G    + I F  D       G+  R +++ K  G  ++I   I  G
Sbjct: 642 GSRHGMAIHFKCDNDQLRPLGRATRGVKAMKLKGDDELIGMDILSG 687


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 356/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   +++    +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVVDKKWKDKGERLEDLI 600


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 341/589 (57%), Gaps = 25/589 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NVNIPKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D+D VD  + Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +  +A I+N  IS ++L+ YI GPD PTGGI++   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + IV+ E PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSIYDIRD 303

Query: 304 ESAED-VRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ES  + +R V+  K +S D    + +++ +F  ++++     NM  ++ G+ P+ + L  
Sbjct: 304 ESDRNGIRAVIELK-KSADMEEAERVLKYLFKKTELQCNLSFNMVAIAEGK-PKTLGLKS 361

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           ILK ++ H+++V+ RR+   ++   +R  I++G + A   +DEI+  IR     K     
Sbjct: 362 ILKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEEN 421

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +V +F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+ +  I 
Sbjct: 422 LVGKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYRELQRRINALTKILNSEKELFKVIK 481

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
            E+ EVKE +        RRT         K  ++  +++ E + + +SN G+I+ +   
Sbjct: 482 KELNEVKENYG-----DERRTNIIHDDEKAKIDIEDIIVD-ENVVITVSNDGYIKRVSEK 535

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             K  +  +  + ++EGD  K  L  +T D +++ +  G  Y L   N+
Sbjct: 536 YYKRINPKIEDIEYREGDFNKFILEGNTKDNLIMFTDAGNLYQLRIVNI 584


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ ++ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  E  NL+++ 
Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ ++K  F        RR+   E++        + +I + 
Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 352/630 (55%), Gaps = 69/630 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------MVS 419
           FR++       I +G  +A  NIDEII +I+  + P  V                  M++
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIK--ESPNAVEAKDKLLAHPWRSSLVEEMLT 434

Query: 420 R-----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           R                       + L+E Q DAIL + LR+L  L++ +I     NL+ 
Sbjct: 435 RSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMG 494

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +      +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I 
Sbjct: 495 KIIDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIP 546

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +++ G+I++  +              A   K+ D ++    A+T D ++  + 
Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606

Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592
            GK      Y LP G   S GR     IQL
Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 236/694 (34%), Positives = 368/694 (53%), Gaps = 63/694 (9%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           RD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +ALI++P I +
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIP
Sbjct: 181 PELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + 
Sbjct: 240 YQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+ F ++    R  +L GL 
Sbjct: 300 LQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLA 358

Query: 395 IAYLNIDEIIAIIRNEDKPKP----VMVSR-------------------------FSLTE 425
           IA  NIDE+I +IR    P+     +M  R                         ++L+E
Sbjct: 359 IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 419 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDE 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           F        RRT   E+         + +I +E + V +S+ G+I        R+ +   
Sbjct: 479 FGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
              S +  ++ D +      +T   +L  S+ G     K + LP G   S    G+A+  
Sbjct: 531 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS---RGKALIN 587

Query: 593 LIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++ L   + I T               ++  +++G     + S+ +   R GK  +K+  
Sbjct: 588 MLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEE 647

Query: 647 EEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
           E    L V+   D   V +     + + FS+D +
Sbjct: 648 EGDEILSVETCTDRDDVLLTTALGQCIRFSVDDV 681


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/618 (33%), Positives = 362/618 (58%), Gaps = 20/618 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ +++D V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LID+P  S++KL+E+I GPDFPTGGI+ + +E I ++Y  GRG   +R++
Sbjct: 186 LSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGIL-QGKEEIKKAYETGRGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + K+I  + ++RDE+      ++  
Sbjct: 245 TRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKDANAQGILNYLFKNTELQINYNFNMVAIDEMR-PQQVGLKHILESYVKHRREVIAKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           S + ++   +R  I+ GL+ A   +DE+IA IR ++DK   K  +V +   TE Q +AI+
Sbjct: 364 SRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q+++E   L     ++  +LN   +    I  E+RE+K+ +      
Sbjct: 424 TLQLYRLTNTDITQLQAEAQELAETIRELTKILNEETELLKVIKKELREIKKKYHSD--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++  SL+S+       L  KEGD
Sbjct: 481 ---RMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYVKRSSLRSYGASKPEELGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
           +L  +  A T D +LL++  G     P   L  L  +  GE I Q +++L   + I+  F
Sbjct: 538 ALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKWKDLGEHISQTVMNLATEETILAVF 597

Query: 607 VY---DSTCKLLVVSSKG 621
            Y   D     +++S  G
Sbjct: 598 TYQELDPQKNFVLISKNG 615


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/434 (45%), Positives = 280/434 (64%), Gaps = 8/434 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSLRKL 442
            AIL LRL  L  L
Sbjct: 422 LAILELRLYQLTGL 435


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 350/630 (55%), Gaps = 36/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G    ++F K
Sbjct: 16  ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG       AA RYTE 
Sbjct: 76  SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP H
Sbjct: 136 KMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 196 NLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
             RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I  + DIRDE++    
Sbjct: 255 TQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F  NM  L  G VP+ + +DG ++ W+ H+
Sbjct: 314 QRLVIVLK-RDAVAKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWINHQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D+ +  ++    +  
Sbjct: 372 IDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLIELLDVDA 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL L+LR L  LE  +I  E   L A  + ++ +L   ++Q   I+ E+ E+ + 
Sbjct: 432 IQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D     + +I +E + V I+  G+         RS K   
Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEAIQ 591
             +     + GD +       TT   LL  T+       KAY +P G   +   H   + 
Sbjct: 544 KGVRGTQLR-GDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGGRDAKGQHVANLL 602

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
                 H   ++    Y+    L++ + +G
Sbjct: 603 AFQPDEHIAQVLAIRTYEDADFLVLATKRG 632


>gi|332967948|gb|EGK07036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella kingae ATCC
           23330]
          Length = 918

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/651 (35%), Positives = 358/651 (54%), Gaps = 69/651 (10%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N     +E + AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  
Sbjct: 14  ANDQQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 72

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 73  NWNGAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYTLVDGQGNFGSVDGDAA 132

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 133 AAMRYTEIRMEKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 192

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN+++     L L+  PE  I +L++ I  PDFPTG  I      I   Y  G
Sbjct: 193 MATSIPPHNLRDTLAGCLKLLREPETDINELIDIIKAPDFPTGATIY-GLTGIRAGYHTG 251

Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +R++  +E +G+      I+V EIPYQV KS+L+EKI +L+  K I  + ++RDE
Sbjct: 252 RGRVVIRSKTHIEPIGKNGEREAIIVDEIPYQVNKSKLVEKIGDLVRDKAIEGIAELRDE 311

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+
Sbjct: 312 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEF 370

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+     +          
Sbjct: 371 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKQSADVETAREALLGRA 430

Query: 417 --------MVSR-----------------------FSLTENQVDAILNLRLRSLRKLEEY 445
                   M+SR                       + L++ Q  AIL + LR+L  L++ 
Sbjct: 431 WQSALVSEMLSRSDLDLSMARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 490

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEVSR 504
           +I  E  +L+A    +  +L +  ++  QI  +     E+    T  G  R++    V  
Sbjct: 491 EIVKEYKDLMAVIVDLLDIL-AKPERVRQIIDD-----ELVVMQTQFGDERKSEINAVGG 544

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALH 556
            D A   + +I    + V +++ G+I++  +              A   K+ D ++    
Sbjct: 545 GDIA--DEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFV 602

Query: 557 AHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           A+T D ++  +  GK      Y LP G   S    G  I  +I L  N+ +
Sbjct: 603 ANTHDYLMCFTNLGKCHWIKVYRLPEGGRNS---RGRPINNVIQLEENEKV 650


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 320/523 (61%), Gaps = 16/523 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +   L+ + ++ED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYASGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   ++ V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D  +    +R
Sbjct: 255 RATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDREHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR +
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RF+L++ Q
Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIERFALSDVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE + L AE  ++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKFDRIELESEKERLNAEIAELTRILDSDAELRKLVSAELAAVSKKF- 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             TD   RRT   E S A  A   Q  +  +P  V++S+ G +
Sbjct: 492 -GTD---RRTVLLESSGAPAAVPLQ--VADDPCRVLLSSTGLL 528


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 253/736 (34%), Positives = 374/736 (50%), Gaps = 83/736 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           E V+ VSL  A   RYL YALS I  RA+PD+RDG KPV RRI++AM +++       F 
Sbjct: 27  EVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWADLKAGATGRFV 86

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+   HPHGDQS+YD+LVR+AQ F  R PLI G GNFG+IDGD  AA RYTE
Sbjct: 87  KSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSIDGDPPAAMRYTE 146

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  AE +L  + E  V+FR  Y     EPVV P+++PNLL NG SGIAVGMAT+IP 
Sbjct: 147 ARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASGIAVGMATTIPP 206

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+C A +AL+DNPEI+I+KL  ++ GPDFPTGG+++ S E +   Y  G G  ++R
Sbjct: 207 HNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGIYANGHGTIKLR 266

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             W  E        +V+T IPY V+K  L+ KI ELI   ++P L +++D S E +RIVL
Sbjct: 267 GTW--EPHPERKEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVKDLSDEAIRIVL 324

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP-------------------QV 354
             +    + +  M  ++  + ++    +NM  L +  +P                   ++
Sbjct: 325 DLRP-GANAEAAMAYLYKNTSLQINHHVNMTCL-LPALPNQRVGDNADATAVRATLADEL 382

Query: 355 MPLDGILKEW-------------------------------------LAH----RREVLF 373
            P D    EW                                     L+H    R EV+ 
Sbjct: 383 EPFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSHFLDFRMEVVI 442

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           R+    ++ + RR+ IL+G  I +  +DE I +IR  +      P + +RF L+  Q DA
Sbjct: 443 RKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLATRFGLSALQADA 502

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL  +L  L KLE  +I  EL    A  E++  LL     +   I  +++ + + +    
Sbjct: 503 ILETKLYRLGKLEIDEILRELAERRARAEELRRLLGDEAARKGLIRDDLKRIAKTY---- 558

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
             G  R T  E    +    ++  I  E   V+++  GWI+  +S + D+ ++  ++GD 
Sbjct: 559 --GTPRRTRIEGPAPEVEFREEDYIVDEDAWVIVTRDGWIKRQRSFT-DIESIRVRDGDR 615

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +     A     + +L++ G AYT    +L+   GHGE I  L  L  N+ IV    +D 
Sbjct: 616 VGWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVGVVCHDP 675

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
            C  +      +A    +  ++A    G+     +S+ +   VV VT           K 
Sbjct: 676 RCLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVVTA--------GGKA 727

Query: 671 LIFSIDQIPEMSRGKG 686
           L FS+  +  +S  KG
Sbjct: 728 LRFSLAALAAVSTRKG 743


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVIRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 350/616 (56%), Gaps = 27/616 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++E
Sbjct: 417 DFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
           +   V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ
Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFV 607
            ++ L+   D V AF+
Sbjct: 589 NMLSLDPG-DSVNAFL 603


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 355/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++    D
Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/590 (37%), Positives = 346/590 (58%), Gaps = 40/590 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G      + K
Sbjct: 43  DRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNK 102

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 103 CARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGAAAPRYTEC 162

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +++D VDF   Y+ +  +P V PS+FPNLL NG++GIAVGMAT IP H
Sbjct: 163 RMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVGMATQIPPH 222

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E A   + +PEIS E+LLE ++    GPDFPTG +I+  R  I ++YR GRG  
Sbjct: 223 NLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHR-GIEDAYRTGRGSI 281

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
            +RA   VEE+ +   C+VVT++PYQV   +L  KIA+L+   +I  + DI DE++    
Sbjct: 282 IMRAIVNVEEI-KNRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIADETSGRTG 340

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K  ++   +++ +++  + ++T F  NM  L +  VP+ +PLDG ++ W+ H+
Sbjct: 341 LRIVITLKRDAV-AKVVLNNLYKHTQLQTTFGANMLAL-VDDVPRTLPLDGFIRHWVDHQ 398

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR++FR++  +  + +L+G L A   +DE+IA+IR     +  +  ++    + E
Sbjct: 399 IEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQLLDIDE 458

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AILN++LR L  LE  +I+ + D L    ++  ++L S  +Q  +I  E  E++ I
Sbjct: 459 TQAQAILNMQLRRLAALERERIQQQHDELQELIDEYQAILASEVRQ-REIVSE--ELQGI 515

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
             K  D   RRT   E+   D     + +I +E + V I+  G+ +  ++   DL     
Sbjct: 516 VDKYGD--ERRT---EIVPFDGDMSMEDLIPEEDVVVTITRGGYAKRTRT---DLYRSQR 567

Query: 546 KEGDSLKIA----------LHAHTTDRILLLSTD------GKAYTLPAGN 579
           + G  +K A              TT   LL  T+       K Y LP G+
Sbjct: 568 RGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGS 617


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 337/583 (57%), Gaps = 26/583 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++ ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQIL-GRSGIHDAYLSGRGS 240

Query: 250 FRVRARW---CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R       +E+ GR     I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR   +    K  +V +F 
Sbjct: 360 EFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEEELAQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ +   + +   
Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                 +A   KE D ++  L     D++L  S  G  Y + A
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNA 574


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/632 (36%), Positives = 355/632 (56%), Gaps = 43/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G    ++F K
Sbjct: 16  ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG       AA RYTE 
Sbjct: 76  SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP H
Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 196 NLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
             RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I  + DIRDE++    
Sbjct: 255 TQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + +DG ++ W+ H+
Sbjct: 314 QRLVIVLKRDAV-AKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWINHQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D+ +  ++    +  
Sbjct: 372 IDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLMELLDVDA 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL L+LR L  LE  +I  E   L A  + ++ +L   ++Q   I+ E+ E+ + 
Sbjct: 432 IQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D     + +I +E + V I+  G+         RS K   
Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590
             +     + GD +       TT   LL  T+       KAY +P G    GR   G+ +
Sbjct: 544 KGVRGTQLR-GDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG----GRDAKGQHV 598

Query: 591 QLLIDLNHNQDI--VTAFVYDSTCKLLVVSSK 620
             L+    ++ I  V A         LV+S+K
Sbjct: 599 ANLLAFQPDEHIAQVLAIRTYEDADFLVLSTK 630


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +KK AR+VGEV+GK H
Sbjct: 112 ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE R+  +AE ++L  
Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ +   AL
Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NPE ++++LLEY+  PDFPTGGII+     ++++YR GRG   VR +  VE +   + 
Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350

Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +   V+    R  DP L
Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  V+ RR+ F++    
Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  I++G+++   N+DE+I +I            + S + L+E Q +AIL + LR L  
Sbjct: 470 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 529

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS       RR+   +
Sbjct: 530 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 584

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
               D   +   +I  E + + +S +G+++ +K+ + +L        S    +  D++  
Sbjct: 585 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603
            L  H  D +L  S  G     +AY +P     S    G  +  ++ ++  + +     V
Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660
           + F  D    +L V    N  I + S ++ +  R  G   ++++S +++K V   + D  
Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
           VA+  +N  + + + D +  +SR  KGV     K+
Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 790


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 355/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVISIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++    D
Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +KK AR+VGEV+GK H
Sbjct: 94  ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 153

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE R+  +AE ++L  
Sbjct: 154 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 213

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ +   AL
Sbjct: 214 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 273

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I NPE ++++LLEY+  PDFPTGGII+     ++++YR GRG   VR +  VE +   + 
Sbjct: 274 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 332

Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +   V+    R  DP L
Sbjct: 333 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 392

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  V+ RR+ F++    
Sbjct: 393 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 451

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           +R  I++G+++   N+DE+I +I            + S + L+E Q +AIL + LR L  
Sbjct: 452 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 511

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS       RR+   +
Sbjct: 512 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 566

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553
               D   +   +I  E + + +S +G+++ +K+ + +L        S    +  D++  
Sbjct: 567 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 624

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603
            L  H  D +L  S  G     +AY +P     S    G  +  ++ ++  + +     V
Sbjct: 625 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 681

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660
           + F  D    +L V    N  I + S ++ +  R  G   ++++S +++K V   + D  
Sbjct: 682 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 737

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
           VA+  +N  + + + D +  +SR  KGV     K+
Sbjct: 738 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 772


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 255/777 (32%), Positives = 406/777 (52%), Gaps = 87/777 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L      +K A+I G+  G 
Sbjct: 18  MKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHRKCAKISGDTSGD 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ ++ RY L+ GQGNFG++DGD  AA RYTEAR+T  A  ++ 
Sbjct: 78  YHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTEARLTTAAVQLMD 137

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D V+    Y+E   EP VFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 138 DLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPPHNLNELIKATLL 197

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--GR 263
           L++NP  SI+ +++ + GPDFPTGG+I   R  I E++  GRG   +R    VEE     
Sbjct: 198 LLENPTTSIDDIMKVMPGPDFPTGGMICGYR-GIKEAFHTGRGKLILRGVIRVEENEDNP 256

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDP 322
               + + EIPY V KSRLIE IAELI  K I  + D+RDES +D +RIV+  K R   P
Sbjct: 257 DRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMRIVIELK-RGEVP 315

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++  ++  SD++  F  NM  L  G +P+ M +  ++  W+ HR +V+ RR+ F +  
Sbjct: 316 EVIINQLYKFSDLQITFGCNMLALDKG-LPRTMNVKQLISVWIEHRIDVVRRRTRFELNK 374

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            + R  IL+G L A  ++DE++ +IR   N D+ +  ++ +F  TE Q +AIL+LRL  L
Sbjct: 375 AEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQFEFTERQANAILDLRLYQL 434

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I  E   LL + + + ++L S       I  E+ ++++   KS     R+T  
Sbjct: 435 TGLERDKINDEYQELLKKIDYLRAVLASEAMVKEIIREELLDIQK-HHKS----ERQT-- 487

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK-EGDS 550
            ++  A+     + +I  EP+ + IS   +I+ +  ++          ++ +  K E D 
Sbjct: 488 -QIIAAETEVNMEDLIANEPVIITISQDDYIKRMPVNTFREQRRGGQGVTGMQLKREEDV 546

Query: 551 LKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL-- 593
           +K    A T D +L+ +  G+ Y L               P  NLL      E I  +  
Sbjct: 547 IKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPEEKIATIQR 606

Query: 594 -------------------------------------IDLNHNQDIVTAFVYDSTCKLLV 616
                                                +D++   ++V A +     ++++
Sbjct: 607 VSSFEEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAARLVKPEQQVML 666

Query: 617 VSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVK-VTGDH-VAVVGENRKLLI 672
            + +G A   EES +  +  T +G     +  E    +  + V GD  + VV EN     
Sbjct: 667 FTHQGMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESILVVCENGFGKR 726

Query: 673 FSIDQIPEMSRGK-GVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             +D   + +RG  GVR  + S ++G +   +C    +G+  + + G++   + NDL
Sbjct: 727 SQVDDFRQTNRGGVGVRSIITSERNGKVIGALCVTDEDGMVMMSATGQTVRINMNDL 783


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/431 (45%), Positives = 279/431 (64%), Gaps = 8/431 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII  + E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D +R+
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q 
Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421

Query: 429 DAILNLRLRSL 439
            AIL LRL  L
Sbjct: 422 LAILELRLYQL 432


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/589 (39%), Positives = 339/589 (57%), Gaps = 64/589 (10%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  +I   R+ I+++Y+ GRG   +R
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMR 179

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
           ++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +RIV
Sbjct: 180 SKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIV 239

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+
Sbjct: 240 IECK-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVV 297

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------- 420
            RR+ F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R         
Sbjct: 298 TRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAA 357

Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q  AIL+LRL  L  LE  +I  E   LL
Sbjct: 358 MLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLL 417

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I
Sbjct: 418 EEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELI 469

Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL S
Sbjct: 470 AREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFS 529

Query: 568 TDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           T GK Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 530 TRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 578


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 349/622 (56%), Gaps = 32/622 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++  +EP V P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI  E L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIY-GIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IAEL+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-DESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV------PQVMPLD 358
             + +RIV+  K R  +  +++  +F ++ +++ F +N   L   +       P+++ L 
Sbjct: 299 GRQGMRIVVDVK-RDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLR 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +  ++ HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P     
Sbjct: 358 ECISYFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQA 417

Query: 419 S---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           +   RF L   Q  AI+++RL  L  L   Q+ +E ++L+   +++ S+L+  ++    +
Sbjct: 418 NLEKRFELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVM 477

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI----- 530
             E++ VK   +K  D  R R    E          +     +P+ + +S+ G+I     
Sbjct: 478 KTELQAVK---AKYGDERRTRIILDE-----HEFNAEDFYPNDPVVITVSHLGYIKRTPL 529

Query: 531 ---RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
              R      V     H ++ D  +    A     ++  +  G+ Y L   ++  G    
Sbjct: 530 SDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPEGDKTS 589

Query: 586 HGEAIQLLIDLNHNQDIVTAFV 607
            G AIQ L++++ + D V AF+
Sbjct: 590 KGRAIQNLLNIDPD-DSVNAFL 610


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D+PE  I++L+  I  PDFPTG  I      + E Y+ GRG   +R    +E
Sbjct: 199 INACLRLLDDPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGTTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ ++ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  E  NL+++ 
Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ ++K  F        RR+   E++        + +I + 
Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 255/746 (34%), Positives = 409/746 (54%), Gaps = 38/746 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIVG+VIGK HPH
Sbjct: 20  YLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIVGDVIGKYHPH 79

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  ++E ++  ++E
Sbjct: 80  GDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEALSEEMMAELEE 139

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI +A LALIDN
Sbjct: 140 ETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEIIDALLALIDN 199

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268
           P++S++ LL  + GPDFPTGG+I+  R  I  + R GRG   +R    +EE  R     I
Sbjct: 200 PDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVADIEESTRADRMAI 258

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           ++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R  +P +++  
Sbjct: 259 IIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRDANPPVVLNR 318

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F  N   L   R P ++ L   L  +L+ R++V+ RR+ FR++    R  
Sbjct: 319 LYAQTPLQTSFGYNFVALVNQR-PMILSLREALAHFLSFRQDVVTRRTLFRLRKARDRFH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL  A   +D+IIA+IR+   P      +V +F+ +E Q  AIL++RL+ L  LE  
Sbjct: 378 ILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMRLQRLTALERD 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I +E + +      ++ +L S     +++   IRE  E  +   + G  R T   +   
Sbjct: 438 KIDAEYEEVRVLILGLEEILGS----RSRLMAVIRE--EFMALRENYGDARKT--RIVPE 489

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557
           D     ++MI  +P  + ++ +G+I+ +   +           S +  KE D++ I L  
Sbjct: 490 DGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTP 549

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTC 612
              + IL  +  GK Y + A  +  +     G+ I+  + L   + +   +    ++   
Sbjct: 550 TAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPIRGFLPLAPEEKVTRMLNVASFEGER 609

Query: 613 KLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
            L+ V+  G   I++ + + A +   + G   L +   +++  V+    D HV V     
Sbjct: 610 SLVFVTVNG---IIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVAEADSHVLVATRRG 666

Query: 669 KLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             ++F I ++ E  R   GVR ++  ++  ++D       + +  +   G  Y +  +  
Sbjct: 667 MAILFPIHEVTEQGRTASGVRAIRLREEDRVADAEIVTETDPVAVVTEKG--YGKRLDVA 724

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 RGG+G  + +G  + G  +S
Sbjct: 725 KFRHQHRGGMGLKISRGAEKIGAVVS 750


>gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 305

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 227/305 (74%)

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E D+L AEK  ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      
Sbjct: 1   EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           D   + QAMIE+EP+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L 
Sbjct: 61  DLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLF 120

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            +T GK +T+ A  L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FI
Sbjct: 121 FTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFI 180

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           V ESE +ANTRKGK  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGK
Sbjct: 181 VPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGK 240

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVRLQ YKDGG+ DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFP
Sbjct: 241 GVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFP 300

Query: 746 RSGKF 750
           RSGKF
Sbjct: 301 RSGKF 305


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  ISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVIRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/582 (37%), Positives = 335/582 (57%), Gaps = 34/582 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+P +RDG KPVHRR+++AM + G      F K A
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +M
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   ++N E S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG   +
Sbjct: 200 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++     R
Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D+++ F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E + 
Sbjct: 436 ANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY- 494

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                G  R T       D +   + +I +E I V ++  G+I        R+ K     
Sbjct: 495 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           +     KE D +     + T   +L  +  G     KAY LP
Sbjct: 548 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKLPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/679 (33%), Positives = 374/679 (55%), Gaps = 41/679 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVGGR-PRLLSLRECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P      +  RF
Sbjct: 357 VEHRHDVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI+++RL  L  L   Q+  E D L+   + +  +L++ ++    +  E++E
Sbjct: 417 GFDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPERCREVMKAELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
           +   V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ
Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            ++ L    D V AF       L +     +AF+ +   ++  T++G   KT L+  S  
Sbjct: 589 NMLSLEAG-DAVNAF-------LRIRGLDDDAFL-DSHFVVFATKQGIVKKTSLRAYSRP 639

Query: 649 KMKLVVKVT---GDHVAVV 664
           +   V+ +    GD V  V
Sbjct: 640 RTNGVIAININEGDEVVDV 658


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600


>gi|332527566|ref|ZP_08403613.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 340/609 (55%), Gaps = 59/609 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+   +   +KKSARIV
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D++ VDF   Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+ EI
Sbjct: 131 AHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPHNLNEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  PE +IE+L+E +  PDFPT GII    E + E YR GRG   +RA+   E
Sbjct: 191 VDACLHLLKVPEATIEELMEIVPAPDFPTAGIIY-GLEGVREGYRTGRGRVVMRAKCHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V EIPYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    R
Sbjct: 250 DIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  +L  +L HRREV+ RR+ +
Sbjct: 310 GEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PRLCNLKQLLDIFLEHRREVVTRRTVY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420
            ++    R  +L+GL +A  NIDE I  I+    P   K  ++S+               
Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLARAE 428

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E+Q   IL +RL+ L  LE+ +I  E   +
Sbjct: 429 ESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEYREV 488

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +++   +  +L   ++    +  E+  +++ F ++  +G RR+    + R       + +
Sbjct: 489 MSQIADLLDILARPERVTAILVEELNALRQEFGQAK-VGARRSV---IERNALELGTEDL 544

Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I    + V +S+ G+I        R+ +       A   K+ D +     A+T D IL  
Sbjct: 545 ITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILCF 604

Query: 567 STDGKAYTL 575
           S  G+ Y L
Sbjct: 605 SDRGRVYWL 613


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/688 (31%), Positives = 393/688 (57%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP IS+ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + +   +F  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVVN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V+ +  T+ Q +AI
Sbjct: 361 RTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F     
Sbjct: 421 VMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E   A+    ++ M+  E + + ++ +G+I+   + S +   +S +  K+G
Sbjct: 479 ----RLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D L      +T D IL+ +  G+   +P   L   R    G+ +  L+ +  ++ I+  +
Sbjct: 535 DRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIINVY 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVA 662
              +  +    +++++        + +   TR  K    +KV  ++++  V ++T D + 
Sbjct: 595 NEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQII 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  ++ + L ++ +++ +   R  GV+
Sbjct: 655 TVLTHKGMSLTYNTNELSDTGLRAAGVK 682


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +VS+F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVSDKKWKDKGERLEDLI 600


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 252/730 (34%), Positives = 385/730 (52%), Gaps = 87/730 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E G      ++KS
Sbjct: 12  DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHESGFTHNKPYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD ++Y +L R+ Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 72  ARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 132 LAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A LA IDN  I+I++L++ + GPDFPT  +I+  +     +Y  GRG   +RAR
Sbjct: 192 LGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYHTGRGSIMMRAR 250

Query: 256 WCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
             +EE GRG    IV+T IPYQV K+ L+EKIAE    KRI  + DIRDES+ E VRIV+
Sbjct: 251 HEIEE-GRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDESSREGVRIVM 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P++++  ++  +  ++ FP NM  +  GR P+++ +  I++ ++  R EV+ 
Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PELLNIRDIIEAFVRFREEVIT 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ + +     R  IL GL+IA  N+DE++ IIR    P   +  +++R          
Sbjct: 368 RRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARDWPVAEIAPY 427

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L++ QV AIL+LRL  L  L   +I +EL  L A   +  ++L
Sbjct: 428 LKLVEAIETEVGGDSYRLSDTQVRAILDLRLHRLTALGRDEIGNELAELAAAIAEYLAIL 487

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  +  E   ++  F+             E++ A      + +IE+E + V ++
Sbjct: 488 GDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIDDEDLIEREEMVVTVT 539

Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +G+I+     S           S +  K+ D++       T   +L  ST GK Y L  
Sbjct: 540 VQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599

Query: 578 GNLLSG----RGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
             L  G    RG           GE IQ ++ L  ++        DS   L V+ +  N 
Sbjct: 600 WRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDE--------DSWKDLHVMFATANG 651

Query: 624 FIVEES-EIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            +   S +  AN    GK  ++   E   +L+       VA++ E   +L+ +       
Sbjct: 652 TVRRNSMDAFANIPSNGKIAMRFDDESDDRLI------GVALLTEEDDVLLAT------- 698

Query: 682 SRGKGVRLQS 691
            +GK +R Q+
Sbjct: 699 RQGKAIRFQA 708


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 351/630 (55%), Gaps = 69/630 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------MVS 419
           FR++       I +G  +A  NIDEII +I+  + P  V                  M++
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIK--ESPNAVEAKDKLLAHPWRSSLVEEMLT 434

Query: 420 R-----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           R                       + L+E Q DAIL + LR+L  L+  +I     NL+ 
Sbjct: 435 RSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMG 494

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +      +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I 
Sbjct: 495 KIIDFVDILSKPERITRIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIP 546

Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +++ G+I++  +              A   K+ D ++    A+T D ++  + 
Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606

Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592
            GK      Y LP G   S GR     IQL
Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/610 (34%), Positives = 355/610 (58%), Gaps = 24/610 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSSIAMELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +A +A++
Sbjct: 138 EKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             PEI + +++ +I GPDFPT GII+   E I+++YR G+G   +R++  +E +  G   
Sbjct: 198 QKPEIELAEIMTFIKGPDFPTSGIIM-GGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLM 326
           IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  E +RIV+  K +  D + ++
Sbjct: 257 IVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELK-KDADANGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +   +D++  +  NM V  + + PQ + L  +L  ++ H+REV+  R+ F ++  + R
Sbjct: 316 AYLLKKTDLQITYNFNM-VAIVNKTPQQLGLKAMLTAYIEHQREVVTNRTQFELEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+IL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            + ++ ELD L  + E + ++L+S K+    I  E+ E++E +        RR+   E  
Sbjct: 435 IHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREKYGIE-----RRSVIQEEV 489

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + ++  E + V +SN G+I+     S      +L +   K+GD +      +
Sbjct: 490 EEIKVNL-EVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELGSSGVKDGDYITRLFEVN 548

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF----VYDSTC 612
           T + +L+ ++ G+ + LP   +     +  G AI  +I +    +IV+        D   
Sbjct: 549 TLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKEDNIVSVIPVSNFEDPGK 608

Query: 613 KLLVVSSKGN 622
            L+ VS KG 
Sbjct: 609 SLVFVSRKGQ 618


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/646 (35%), Positives = 358/646 (55%), Gaps = 47/646 (7%)

Query: 9   SNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + TL  E+  ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G 
Sbjct: 2   TETLPPEHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSGY 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+G  HPHGD S+YD+LVRLAQP+  R+PLI GQGNFG+   D A
Sbjct: 62  RPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDPA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+  +A  +L  ++ED VDF D Y+    EP V P++ PNLL NG  GIAVG
Sbjct: 122 AAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +  +  ++NPE   E LLE +I    GPDFPT G+I+ +  +I ++
Sbjct: 182 MATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGT-NAIADA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA   VEE  +G   +VVTE+PYQV    LIE IA +    ++  + DI 
Sbjct: 241 YRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDIA 300

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES     +RIV+  K  S+ P +++ +++  + ++  F +NM  L  G VP+ + LD +
Sbjct: 301 DESNSRRGMRIVITLKRDSI-PKVVLNNLYKHTQLQYTFGVNMLALVEG-VPRTLRLDQV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           ++ ++ H+ EV+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR     D  +  +
Sbjct: 359 IRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q +AIL ++LR L  LE  +I  +L  +  E E +  +L+  ++Q   I  
Sbjct: 419 IELLEVDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIEDLKDILDKPERQRQIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW---- 529
           E+     I  K  D   RRT       EVS  D       +I  E + V ++  G+    
Sbjct: 479 EL---MAIVDKHGD--DRRTRIVPHEGEVSMED-------LIADEDVVVTLTRTGYAKRT 526

Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580
                R+ K     +     K+ D +       T D IL  +  G     KAY LP  N 
Sbjct: 527 RTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEANR 586

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFI 625
            +    G+ +  L+    ++ I     + D T    +V +  N  +
Sbjct: 587 TA---RGQHVANLLAFQPDEHIAQVMQIKDYTAAPYLVLATRNGLV 629


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/688 (31%), Positives = 393/688 (57%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP IS+ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + +   +F  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVVN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V+ +  T+ Q +AI
Sbjct: 361 RTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F     
Sbjct: 421 VMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKTE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
               R +  E   A+    ++ M+  E + + ++ +G+I+   + S +   +S +  K+G
Sbjct: 479 ----RLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D L      +T D IL+ +  G+   +P   L   R    G+ +  L+ +  ++ I+  +
Sbjct: 535 DRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIINVY 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVA 662
              +  +    +++++        + +   TR  K    +KV  ++++  V ++T D + 
Sbjct: 595 NEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQII 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  ++ + L ++ +++ +   R  GV+
Sbjct: 655 TVLTHKGMSLTYNTNELSDTGLRAAGVK 682


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LIDNP  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSVRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/637 (35%), Positives = 353/637 (55%), Gaps = 67/637 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +++KKSARIV
Sbjct: 16  VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSSYKKSARIV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYTE RM ++
Sbjct: 76  GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAMRYTEIRMAKI 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++ED V+F   Y+  + EP+V P++FP+LL NG++GIAVGMAT+IP HN+ + 
Sbjct: 136 AHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMATNIPPHNLGDT 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ +P+ SI+ L++ I  PDFPTG  I      + E YR GRG   +R +  +E
Sbjct: 196 VDACLQLLADPDTSIDALIDTIKAPDFPTGATIY-GLAGVREGYRTGRGRVVMRGKTHIE 254

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 255 PIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRVVIELK 314

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 315 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 373

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420
           FR++       I +G  +A  NID +I +I+                        M+SR 
Sbjct: 374 FRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGLVGDMLSRT 433

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q DAIL + LR+L  L++  I ++   ++A+ 
Sbjct: 434 DLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILADYKTIMAQI 493

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L   ++    I  E+ E+K      T+ G  R +       D A   + +I   
Sbjct: 494 IDFLDILAKPERITQIIHDELIEIK------TNFGDPRRSEINPFGGDIA--DEDLIPPR 545

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 546 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG 605

Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
                K Y LP G   S    G  I  +I L+ N+ +
Sbjct: 606 RCHWIKVYKLPEGGRNS---RGRPINNVIQLDENEKV 639


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/713 (33%), Positives = 390/713 (54%), Gaps = 37/713 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL  
Sbjct: 4   SSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTP 63

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA
Sbjct: 64  DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAA 123

Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  ++ + +L  ++++ VDF D ++    EP+V P++ P LL NG+SGIAVGM
Sbjct: 124 MRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +  +ALI NPEI+  +L++ I GPDFPTGG I+ +   I E+Y  GR
Sbjct: 184 ATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGT-AGIREAYTTGR 242

Query: 248 GGFRVRARW---CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G   +R       +E+ GR     I++TE+P+Q  K+ LIE+IAE +  KR+  + DIRD
Sbjct: 243 GSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRD 302

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   ++    R   P +++ +++  + ++T F  NM  L +G  PQ++ L   L  
Sbjct: 303 ESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLAL-VGGDPQLLTLRQFLSV 361

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
           +L  R + + RR+ F+++    R  +L+GLLIA  N+D +I +IR   +    +  ++  
Sbjct: 362 FLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELMDG 421

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q DAIL ++LR L  LE  +I+ E  +L      ++ +L   ++    I  E+ 
Sbjct: 422 FGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIETEVT 481

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K  F+        R T  E + AD   +   +I  +   ++++ +G+++ +   + + 
Sbjct: 482 ELKTKFASP------RRTLIEANLADLDDID--LIANDQAVILVTEQGYVKRMPVDTFNA 533

Query: 541 --------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590
                   +    KE D+++        D +L  S  G  Y L A  + +S R   G  +
Sbjct: 534 QSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARGVPL 593

Query: 591 QLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             L+ +   + I +       S  + LV+ + G  FI + +    +  +    + +S EE
Sbjct: 594 VQLLPIPREEKITSVIPVSEFSEDEYLVMMTAG-GFIKKTALAAFSNIRANGLIAISLEE 652

Query: 649 K--MKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSYKDG 695
              ++ V     +   V+G  R + I F  D  Q+  + R  +GVR    ++G
Sbjct: 653 GDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREG 705


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAYPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/621 (34%), Positives = 354/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           +++V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F       +RRT   E+  ++  +++ + +IEK+ I + +++  +I+ +          
Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNSYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q +I++    D
Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 413/744 (55%), Gaps = 73/744 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G+   ++ +KS+
Sbjct: 19  VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+L R+A+ F  RYPL+ GQGNFG++DGD  AA RYTEARM
Sbjct: 79  SIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +AE +L  +D+D VDF+  Y++   EP V PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ LI+NP+ ++  L+E+I GPDFPTG  IV +R ++ ++Y+ GRG  RVRA +
Sbjct: 199 GEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIV-ARNAVHKAYKTGRGRVRVRADY 257

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            V EE GR    IV+ E+PYQ  K+RLIE+IA+ +   +I  + DIRDES  D +R+V+ 
Sbjct: 258 DVFEEEGR----IVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESERDGIRVVIE 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  ++    ++++  + + +E+ F + +N+  +   PQV+ L   L+ +L HRR+V+ R
Sbjct: 314 LKRGAMAE--VVKNQLLDNHLESTFGV-INLALVDGQPQVLTLKETLEHYLDHRRDVVRR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VS 419
           RS + +   + R  IL G L A  NID+++  IRN    D  K  +            + 
Sbjct: 371 RSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVDGEPLP 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F  +E Q + I++++L SL  +E  +I++E +++ A  E+++++L    +    I  E+
Sbjct: 431 TFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQSELDAVIESEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFC----EVSRAD--------KATLQQAMIEKEPITVVISNR 527
            ++K+ ++       RRT+F     EV+RAD            +   I++ P++      
Sbjct: 491 LDIKDEYADD-----RRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS------ 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRG 585
              R+       +     KEGD++      +T D +L  +  G+ Y L A  +  +S   
Sbjct: 540 -RFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTA 598

Query: 586 HGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            G++   L+D +  ++I TA V      D    L +V+  G                G  
Sbjct: 599 RGKSAVNLLDFDDGEEI-TAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGII 657

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDG 695
             K+   +++  V    G+   V+G  R + I F  D++  M R     +G++L+     
Sbjct: 658 ATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAMGRSARGVRGIKLEG---- 713

Query: 696 GISDVICFKICEGLTWIDSAGRSY 719
              DV+      G+  ID A  S+
Sbjct: 714 --DDVVA-----GVAAIDEAHHSW 730


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 256/788 (32%), Positives = 442/788 (56%), Gaps = 70/788 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D + N ++LV + +K +++   +++ +L+YA+S I  RA+PD++DG KPV RRI++ M+E
Sbjct: 6   DLLKNEDSLVGK-IKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNE 64

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   +++KKSARIVG+V+GK HPHGD S+Y++++R+AQ F  RYPL+ G GN G+IDG
Sbjct: 65  LGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDG 124

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTE +M++++  +L+ +D++ VDF + Y+  + EPV  PS FPNLL NG++GI
Sbjct: 125 DNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IPSHN+ E+ +A +  IDN EI  E L+++I GPDFPTGG I+     + E+Y
Sbjct: 185 AVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEIL-GISGLKEAY 243

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VR++  +    +    I++ EIPYQ++K+ LIEKIA L+  K I  + D+RD
Sbjct: 244 ETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRD 303

Query: 304 ES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES  +  +RI++  + + ++P +++ +++  + ++T F  NM  L  G VP+++ L  +L
Sbjct: 304 ESNNSRGMRIIIELR-KDVEPKIILNNLYKHTQLQTSFCFNMIALVNG-VPKIVSLKNML 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM 417
           +E+   R +V+ R+  F +    ++  ++  L I   +I++++ II+N    ++  K +M
Sbjct: 362 EEFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIM 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ ++  E Q  AIL + L+ +  LE  ++  E + L  +  + ++++NS  ++   +  
Sbjct: 422 IN-YNFDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQTKKEKILKK 480

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSH 536
           E+ ++K  F       +R++    +S     T++ +++I KE I + ++N+G+I+ L   
Sbjct: 481 ELLKIKNQFQ-----DKRKSI---ISNEQYLTVENESLINKETILITVTNKGYIKRLNLD 532

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +          +S L  +E D L+  L   T D  L  +  GK Y L    +  G  + +
Sbjct: 533 TYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYSK 592

Query: 589 AIQL--LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            I L  L+ L  N+              L   +    F  E++ ++  T+KG   +K +S
Sbjct: 593 GIPLVNLLPLEKNE-------------FLTSLTSVKDFKEEKNYLVLVTKKG--LIKRNS 637

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFS-----IDQIPEMSRGKGVRLQSY-------KD 694
            +  +  V+  G   AV+  N ++L  S      D I   S GK +R   +       K 
Sbjct: 638 LKDFE-NVRRNGKIAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQTGRKS 696

Query: 695 GGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKG 743
            G+   I  K  E   G+T +DS  ++         G + K        RGG G+   K 
Sbjct: 697 SGVRG-IKIKTEEEIIGMTVVDSEKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKI 755

Query: 744 FPRSGKFL 751
             R+GK +
Sbjct: 756 TSRNGKLV 763


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  + +++  V  +
Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K+     S  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFIC 700


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 322/529 (60%), Gaps = 20/529 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+AM + G     +F K 
Sbjct: 28  HIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKC 87

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 88  ARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETK 147

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 148 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHN 207

Query: 196 VQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     + NP  + E+LL  ++    GPDFPTG  I+ ++  I ++YR GRG   
Sbjct: 208 LREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTK-GIEDAYRTGRGSIT 266

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++  + D+RDE++     
Sbjct: 267 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQ 325

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P +++ +++  + ++  F  NM  +  G VP+ + LD  ++ W+ H+ 
Sbjct: 326 RLVIVLK-RDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFVRHWVDHQM 383

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D+ +  ++    + E 
Sbjct: 384 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLMEFLQIDEA 443

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AILN++LR L  LE  +I+   D L+    + ++++ S  +Q   I+    E+ EI 
Sbjct: 444 QAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQREIIS---EELGEIV 500

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           ++  D   RRT        D +   + +I +E + V I+  G+I+  +S
Sbjct: 501 NRYGD--ERRTQIMYGYNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 545


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NIDEII +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 378/714 (52%), Gaps = 62/714 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ + +VS+   ++  YL YA++ I  RAIPDLRDG K VHRRI+  M +MG+++   + 
Sbjct: 13  EKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGMMQMGVEWNKKYV 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG+IDGD  AA RYTE
Sbjct: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSIDGDPPAAERYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ + A  +L  + +D VDFR  Y+    EPVV  +KFPNLL NG  GIAVGMAT+IP+
Sbjct: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAGGIAVGMATNIPT 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  +ALIDNP+I ++ +++ I+GPDFPTG II+  R  I  +Y  GRG   +R
Sbjct: 193 HNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIIL-GRSGIRSAYATGRGSIVIR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               +E+       I+VTEIPYQV KS ++EKIAEL+  KRI  + D+RDES      V+
Sbjct: 252 GVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLRDESDRQGYRVV 311

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    D+++  ++  + +++ F +NM  L+ G  P+   L  ILK ++A R EV+ 
Sbjct: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIEILKNFIAFREEVVG 370

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420
           RR+ + +     R  +L GL IA  N+DE++ IIR    P+     ++ R          
Sbjct: 371 RRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQRNWNAVDIKDL 430

Query: 421 ----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q  AIL LRL  L  L    I+ EL++L  E +    +
Sbjct: 431 IDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSLGTEIKDCLEI 490

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S  +  N I  E++ +K+      D  RR     E+         +  I +E + V +
Sbjct: 491 LSSRSRLLNIIKQELKFIKD----ELDTPRR----TEIVDGLLDMEDEDCIVREDMVVTV 542

Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571
           S+ G++        R+ +      S +  +  D +      +T   +L  S+ G     K
Sbjct: 543 SHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYKEK 602

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVV---SSKGNAFI 625
            + LP G   S +  G+A+  ++ L   + I T       +S+C  L V   +  GN   
Sbjct: 603 VWRLPIG---SPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRR 659

Query: 626 VEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
            + S+ +   R GK  +K+   +E + +   + G+ V +  +  + + F+I  +
Sbjct: 660 NKLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDV 713


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/706 (32%), Positives = 398/706 (56%), Gaps = 27/706 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ +  L
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA-TPRL 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
                T  +V   D A+L    I +E   V ++  G+I+   + S   S L     ++ D
Sbjct: 480 SSLEDT-AKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSTRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+   
Sbjct: 535 RLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+  + K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
            V ++ +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQSAFIC 700


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/743 (32%), Positives = 424/743 (57%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A++++I NP I+I+++L+ + GPDFPTG II ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDASISIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IVV EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+ GL+ A   +DE+I +IR +E++   +  +V  F+ T NQ  AI+++RL
Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + +   +  G  I  +     N+ I+ AF+    
Sbjct: 537 QGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+VS  G   +++ ++I     K   K+F  +K+S ++ +    ++     + 
Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N   + ++I+ IP  S   KGV+  + KD  I   +     + +  I +   +Y 
Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLDNNKDV-LIFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           R + +L+  ++  + G+  LV K
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/630 (35%), Positives = 355/630 (56%), Gaps = 40/630 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G      + K +
Sbjct: 42  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 102 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 161

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 162 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 221

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+PE S E+LL  +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 222 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 281 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 340 LVLVLK-RDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 397

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     D+ +  ++    + + Q
Sbjct: 398 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 457

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+ E+ + + 
Sbjct: 458 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 517

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT     S        + +I +E + V +++ G+I+  K+            
Sbjct: 518 DD-----RRTRILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 569

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
           +     +E D +       T + +L  + +G     K Y +P G+  S    G+ +  L+
Sbjct: 570 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDS---KGQHVANLL 626

Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621
            L  +   Q +++   YD    L++ +  G
Sbjct: 627 QLGPDEKIQQVLSIHDYDEAKYLVLATRSG 656


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 254/782 (32%), Positives = 415/782 (53%), Gaps = 55/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNP  S E+ L    E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EEVG     IV+TE+PYQV    +I  IAE ++  +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEVG-NRQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L  ++AH+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     ++ +  
Sbjct: 357 MLSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q DAIL +RLR L  LE  +I  EL  +      +  +L   ++Q   + 
Sbjct: 417 LMQLLGVDEIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDILAREERQREIVH 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+ E +        RRT   ++  A      + +I +E + V I+  G+ +  K  
Sbjct: 477 DELEEIVEKYGDE-----RRT---QIVAASGDVSDEDLIARENVVVTITATGYAKRTKVD 528

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586
           +          +     K+ D +K      T D IL  +  G+ Y L A  L  +GR   
Sbjct: 529 AYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693
            ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +   
Sbjct: 646 AINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702

Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   ++   +        + ++G    R+  +     G RGG+G +  K  P+ GK +
Sbjct: 703 --GDDQLLSMSVVSDGQFLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRGKLI 759

Query: 752 SS 753
           ++
Sbjct: 760 AA 761


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ S   
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATS--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++    D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQSITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 RLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFIC 700


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 358/632 (56%), Gaps = 39/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + L+  +++ YL YA++ I  RA+P++RDG KPVHRRI++AM + G      F K
Sbjct: 11  DRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAMYDGGYRPDRGFSK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +RIVG+V+G+ HPHGD ++YD+LVRLAQP+V R P+I  QGNFG+   D AAA RYTE 
Sbjct: 71  CSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSPGNDPAAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +++ +D++ VDFR  Y+    EPV+ PS+FPNLL NG++GIAVGMAT IP H
Sbjct: 131 RLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSAGIAVGMATQIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+  AA   ++NP+ S E++L    E+I GPDFP G +IV   + I ++YR GRG  
Sbjct: 191 NLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIV-GYKGIDDAYRTGRGSV 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   +EE  +G   +VV+E+PY V    L +KIAEL+   ++  + DIRD+++    
Sbjct: 250 TMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGIADIRDDTSSRTG 309

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R   P +++ +++  + ++  F  NM  L  G VP+ + LD  +  W+ H+
Sbjct: 310 QRLVIVLK-RDAQPRVVLNNLYKHTQLQDTFGCNMLALVDG-VPRTLSLDLFITHWIDHQ 367

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R++  ++   + +G + A   +DE+IA+IR     D+ +  ++S   + E
Sbjct: 368 IEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQGLISLLDIDE 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I   L+ L A    ++ +L    +Q + +  E+ E+ + 
Sbjct: 428 IQAQAILDMQLRRLAALERQKIIDRLNELEAVIADLEDILADPVRQRHIVRDELAEIVDK 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RRTT      AD     Q ++  E + V I+  G+ +  K+   DL  +  
Sbjct: 488 FGDD-----RRTTIIA---ADGDLSVQDLVPDEDVVVTITRGGYAKRTKT---DLYRVQN 536

Query: 546 KEGDSLK---------IALHAHTTDR--ILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592
           + G  ++         I     TT+   +L  +T G+ Y      L  S R   G  +  
Sbjct: 537 RGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTKGRVYRAKVWQLPESARDAKGSHVAG 596

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           L+    +++I        YD    L++ + KG
Sbjct: 597 LLSFQPDEEIAQVLTLRDYDQADYLVLATKKG 628


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 317/527 (60%), Gaps = 21/527 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V L+  +E  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G    ++F KS 
Sbjct: 13  IKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDGGYRPDSSFSKSV 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG      AAA RYTEARM
Sbjct: 73  KIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDLGAAAPRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            Q+A  +++ ++E+ VDF   ++    EP V  ++FPNLL NG+ GIAVGMAT IP HN+
Sbjct: 133 AQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIAVGMATRIPPHNL 192

Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+       +DNPE +    ++ LLE + GPDFPTG  I+ ++  I   YR G G    
Sbjct: 193 REVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTK-GIESMYRTGNGSITQ 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   V+E+  G  C+VVT++P+QV   RL++K+ E I   R+P + DIRDES+     R
Sbjct: 252 RAIVEVDEIN-GRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIADIRDESSGRAGQR 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K  ++   +++ +++  + M+  FP NM  L  G VP+ + LDG ++ W+ H+ E
Sbjct: 311 IVIVLKKDAV-AKVVLNNLYKHTQMQNNFPANMLALVDG-VPRTLSLDGFVRHWVNHQIE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++ +  R+ IL+GL+ A   +DE+IA+IR     D+ +  ++    + E Q
Sbjct: 369 VIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREGLMKLLDINEIQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL ++LR L  LE  +I  E D  LA ++    +L   ++Q   ++ E+ ++   F 
Sbjct: 429 ADHILAMQLRRLAALERQKILDERDEKLALRDDYQDILAKPERQRTIVSDEVGDIVAKFG 488

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                  RRT        D     + +I ++ + V I+  G+++  K
Sbjct: 489 DD-----RRTKILPF---DGEVSDEDLIPEDDVVVTITRSGFVKRTK 527


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/699 (35%), Positives = 390/699 (55%), Gaps = 34/699 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+GL     F+K A
Sbjct: 16  VVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAPDRPFRKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYD+LVRL Q F  RYPL+SG GNFG+ID D  AA RYTE R+
Sbjct: 76  RVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTECRL 135

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             V  + +L  +D+  V+F D ++    EP V P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 136 AAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPE++ E+LL  I GPDFPTGG I+ + E I E+Y  GRG   +R  
Sbjct: 196 LGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGT-EGIREAYLTGRGSITMRGI 254

Query: 256 WCVEEVGRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
              EEVG G      I+VT +PYQV K+  IEK+AEL+   ++  + D+RDES  E VR+
Sbjct: 255 THCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDESNREGVRV 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL  K R   P+ ++  ++ L+ ++  F   +  L  G+ P+++ L  +L+++L  R   
Sbjct: 315 VLEMK-REARPEAILAGLYRLTPLQANFGTILLTLVGGQ-PRLLKLRELLEQFLEFRVAT 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           L RR  + ++    R   L+G L+A  N+  I+ ++            + + + L+E Q 
Sbjct: 373 LTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAELEASYGLSERQS 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL + LR L +L+  ++ SE   L  +  ++ S L+S ++    +  E+R++K+   K
Sbjct: 433 EEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRDLKK---K 489

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
             D    R T  E   A   TL +   + E + V +++RG++R + + + +  +      
Sbjct: 490 HAD---PRRTCIEARTAPLPTLAEITSDDE-VVVQLTHRGYVRRIPAAAFERRSRSRRAV 545

Query: 546 ---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
              ++ D +  +    T + +L+++  G+AY+L    +     R  G  +  L+ +   Q
Sbjct: 546 SRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTLLSIQGEQ 605

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   FV   Y     L++++ +G    +  SE    T +G   LK+S E+++  V   T
Sbjct: 606 -IAATFVRENYPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLAT 664

Query: 658 GDHVAVVGENR-KLLIFSID--QIPEMSRGKGVRLQSYK 693
                VVG +  +LL F  D  Q+P M R   + LQ+ K
Sbjct: 665 AHSQIVVGTSAGRLLRFVADEAQLPAMGR-SALGLQAIK 702


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 328/545 (60%), Gaps = 23/545 (4%)

Query: 3   VDNISNS---NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           VD +SN    N     +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+
Sbjct: 18  VDVVSNGGAENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIY 77

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +F K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG
Sbjct: 78  AMYDGGYRPDRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFG 137

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D AAA RYTE +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG
Sbjct: 138 SPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNG 197

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVES 235
           +SGIAVGMAT+IP HN++E+ E     + NP  + ++LL  ++    GPDFPTG  I+ +
Sbjct: 198 SSGIAVGMATNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGT 257

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           +  I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++
Sbjct: 258 K-GIEDAYRTGRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKV 315

Query: 296 PLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             + D+RDE++     R+V+  K R   P +++ +++  + ++  F  NM  +  G VP+
Sbjct: 316 TGIADLRDETSGRTGQRLVIVLK-RDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPR 373

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NE 410
            + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     
Sbjct: 374 TLSLDAFVRHWVDHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTA 433

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+ +  ++    + E Q  AILN++LR L  LE  +I+   D L+    + ++++ S  +
Sbjct: 434 DEARSGLMEFLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETR 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q   I+    E+ EI ++  D   RRT        D +   + +I +E + V I+  G+I
Sbjct: 494 QREIIS---EELGEIVNRYGD--ERRTQIMYGYNGDMS--MEDLIPEEEVVVTITRGGYI 546

Query: 531 RSLKS 535
           +  +S
Sbjct: 547 KRTRS 551


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 337/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    +DN     E ++  ++E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586


>gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 305

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/296 (57%), Positives = 227/296 (76%)

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+  +QQAM
Sbjct: 8   LKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQAIQQAM 67

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           IEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T GKA+T
Sbjct: 68  IEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFT 127

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           L    L  GRGHGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E+E++AN
Sbjct: 128 LGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELVAN 187

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
           TRKGK  + V+  E+ +L+V V GDHVAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKD
Sbjct: 188 TRKGKQIMNVALPEETQLLVPVCGDHVAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKD 247

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GGISDV CF I +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSGKF
Sbjct: 248 GGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKF 303


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/632 (35%), Positives = 366/632 (57%), Gaps = 35/632 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V +N++ V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        
Sbjct: 7   VFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNNGPDKPH 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y ++V +AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 67  RKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGAAAMRYT 126

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  ++  +++D VDF   +++ + EP V P++FPNLL NG SGIAVGMAT+IP
Sbjct: 127 EARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVGMATNIP 186

Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +HN+ E+  A + +I+N      +  ++++++ + GPDFPTGG I+ +R  I E+YR GR
Sbjct: 187 THNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTR-GIEEAYRTGR 245

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  RVR    +E +  G   I++TE+PY V K+RLIEKIAEL+  K+I  +  I D S+ 
Sbjct: 246 GKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGISDHSSR 305

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           E +RIV+  + R  + ++++  ++  + ++  F + M  L +   P+V+ L  IL+ +L 
Sbjct: 306 EGMRIVIDVR-RDANANVILNKLYKHTQLQDTFGVIMLAL-VDNQPKVLNLLQILEYYLK 363

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H+ EV+ RR+ + +     R  IL+GLL A   IDE+I  IR     ++ K  ++++F  
Sbjct: 364 HQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAKFGF 423

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q  AI+++RLR+L  LE  +++ E D L  + ++  ++L   K     I  EI+ + 
Sbjct: 424 TEAQAQAIVDMRLRTLTGLERDKLQGEFDELQKKIKEYQAILADRKVLLGVIRDEIQIIS 483

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDL 540
           + F      G  R T       D  T  + +I  +   + +S+ G+I+ +     H+ + 
Sbjct: 484 DKF------GDERRTRIGHDVYDITT--EDLIPNDNNVLTMSHLGYIKRMSPENFHAQNR 535

Query: 541 SALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
                K     E D ++      + D I+  +  G+AYTL A  +   S    G AI  L
Sbjct: 536 GGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYTLKAYEIPEASRTARGTAIINL 595

Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKG 621
           + L   + I TA +  S  K    L + + KG
Sbjct: 596 LQLMPGEKI-TAIIPVSEFKENQYLFMATKKG 626


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/630 (35%), Positives = 355/630 (56%), Gaps = 40/630 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G      + K +
Sbjct: 31  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 90

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 91  RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 150

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 151 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 210

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+PE S E+LL  +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 211 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 269

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 270 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 329 LVLVLK-RDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     D+ +  ++    + + Q
Sbjct: 387 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+ E+ + + 
Sbjct: 447 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539
                  RRT     S        + +I +E + V +++ G+I+  K+            
Sbjct: 507 DD-----RRTRILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
           +     +E D +       T + +L  + +G     K Y +P G+  S    G+ +  L+
Sbjct: 559 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDS---KGQHVANLL 615

Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621
            L  +   Q +++   YD    L++ +  G
Sbjct: 616 QLGPDEKIQQVLSIHDYDEAKYLVLATRSG 645


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/743 (32%), Positives = 401/743 (53%), Gaps = 46/743 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGDSAAA 
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAM 128

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++ AE +L+ +D+  V+F   +++E+ EP V P++FPNLL NG  GI+ G AT
Sbjct: 129 RYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYAT 188

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A +ALIDNP I+ +++L+YI GPDFPTGG IV+ +  I E+   G G 
Sbjct: 189 KIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGG-IVQGKAGIKEALTTGSGK 247

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
             +RA+  VEE+ +    IV+TEIPY+V K+ L+ +I  L I   I  + +IRDE+  E 
Sbjct: 248 IIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEG 307

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RI +  K +  D   +   +   SD++  +  NM  +   R P +     +LK +L H+
Sbjct: 308 LRIAIDLK-KGADAQFIQNYLLKSSDLQVNYNYNMVAILKHR-PVLSGAFELLKVYLEHQ 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           +EV+  RS++ ++   +R  I+ GL+     + E+I  IR   N+   K  +  RF  +E
Sbjct: 366 KEVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSE 425

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI+ L+L  L   +   +  E D L  E  +++ +L++ +     I  E++EV+ +
Sbjct: 426 LQAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTL 485

Query: 486 FSKSTDLGRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                    RRT      E  + D    ++ +I  E   V I+  G+++     SV  S 
Sbjct: 486 LPSP-----RRTELEAEIETIKID----EKDLISDEQTYVAITKDGYVKRASLRSVVASK 536

Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
            +  KE D++      +T D +LL +  G+   LP   +     R  G  I  ++  +  
Sbjct: 537 EVGLKENDAMLYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKG 596

Query: 600 QDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLV 653
           + I     V+ F  D   K+L+ + +G    V  ++  ++   +    +K+S ++++  V
Sbjct: 597 ETIIRVLKVSDFSIDQ--KILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSV 654

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                D++  + ++  +L F  +++P         +     GG+       + EG    D
Sbjct: 655 DYNQLDNIVAISKHGYVLRFDTEELP---------VYGLTAGGVK---SMALAEG----D 698

Query: 714 SAGRSYNRSENDLLGWLGKRGGV 736
               ++   E+D   +L  RG +
Sbjct: 699 EVAVAFYAKESDDFYFLTSRGHI 721


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 337/599 (56%), Gaps = 35/599 (5%)

Query: 11  TLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           T  E N V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G    
Sbjct: 20  TEAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPN 79

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F K  R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA 
Sbjct: 80  GGFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAP 139

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE +M  +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT
Sbjct: 140 RYTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMAT 199

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRL 245
            IP HN++E+ +AA   +++PE S E+LLE     I GPDFPTG  I+  R  I ++YR 
Sbjct: 200 RIPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRT 258

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG    RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE+
Sbjct: 259 GRGSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDET 317

Query: 306 AE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++    R+V+  K R   P +++ +++  + ++  FP NM  L  G VP+ + LDG +  
Sbjct: 318 SDRAGTRLVVVLK-RDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHY 375

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W+ H+  V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +  +  ++  
Sbjct: 376 WVVHQVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDL 435

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            S+ E Q DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ 
Sbjct: 436 LSVDEVQADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELA 495

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+   ++       R+T    V  A + +++  +I +E + V I+  G+         RS
Sbjct: 496 EIANKWADE-----RKTAI--VPFAGEMSVED-LIPEEDMVVTITRGGFAKRTRVDAYRS 547

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
            +     +     +E D ++    + + D IL  +  G     KAY +P G   S   H
Sbjct: 548 QRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQH 606


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 352/634 (55%), Gaps = 43/634 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 13  DRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYSK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD S+YD+LVRLAQ +  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 73  CARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPGNDPAAAPRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +DE+ VDF   Y+    EP V PS+FPNLL NG++GIAVGMAT+IP H
Sbjct: 133 RMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E A  L+DNP+ S E+    LL  I GPDFPTG +I+  R  I ++YR GRG  
Sbjct: 193 NLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHR-GISDAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VV+E+PYQV    L E IA L+   R+  + D++D ++    
Sbjct: 252 TMRAVVEVEEI-QGRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGIADVQDHTSGKTG 310

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  +  ++   +++ +++  + ++T F  NM  L  G VP+ +P+   LK W+AH+
Sbjct: 311 QRLVIILRRDAV-AKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPIHAFLKHWIAHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++  + R  IL+ LL A   +DE+IA+IR     +  +  ++    + E
Sbjct: 369 LDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARDGLMGLLEIDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++LR L  LE  +I  E D L+      + +L   ++Q   +  E+ E+ E 
Sbjct: 429 IQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDILARPERQRQIVGDELAELVER 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------S 537
           +      G  R T       D     + +I  E + V ++  G+ +  K+          
Sbjct: 489 Y------GDERKTQILPFEGDMTV--EDLIPVEDVVVTVTRGGYAKRTKTDLYRAQRRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590
             +     +E D ++      TT   LL  T+       K Y LP G    GR G G+ +
Sbjct: 541 RGVRGASLREDDVVE-HFFTTTTHHWLLFFTNLGRVYRAKGYELPEG----GRDGRGQHV 595

Query: 591 QLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGN 622
             L+     + IV     +       LV++++G 
Sbjct: 596 ANLLAFQPGERIVAVLDIEDYEQAPYLVLATRGG 629


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDINAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/702 (33%), Positives = 387/702 (55%), Gaps = 43/702 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  + N    + V  + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDNNGSDNLF--DRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSA+ V + +G  HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RMT +A  +++ + E+ V+F+  Y+ + +EP V PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ EA   L+DNP+     ++E  +E + GPDFPT G+IV  +
Sbjct: 179 GGIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDK 238

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG  R+R    +EE G     I++TE+PYQV    L+  IAE I   +I 
Sbjct: 239 -GIQDTYRTGRGSIRMRGVTSIEEEG-NRQVIIITELPYQVNPDNLVASIAEQIRDGKIA 296

Query: 297 LLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            +  I DES++ V  RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ 
Sbjct: 297 GISKIDDESSDRVGMRIVITLK-RDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDG-VPRT 354

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + LD +L+ ++ H+ +V+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     D
Sbjct: 355 LRLDQMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVD 414

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    + E Q D IL ++LR L  +E  +I  EL  L      + ++L S ++Q
Sbjct: 415 EARTGLIDLLDVDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAILESPQRQ 474

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            + +  E+ E+ + +        RRT   ++  A     ++ +I +E + V I++ G+ +
Sbjct: 475 RDIVRTELAEIVDKYGDE-----RRT---QIIAASGDVSEEDLIARENVVVTITSTGYAK 526

Query: 532 SLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581
             K  S          +     K+ D ++      T D IL  +  G+ Y L A  L   
Sbjct: 527 RTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEA 586

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRK 637
           +    G+ +  L++    + I        Y+    L++ ++ G    V++S +   +T +
Sbjct: 587 TRTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATAHGR---VKKSRLTDYDTAR 643

Query: 638 GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSID 676
               + ++  E  +LV   +    D + +V E  + + F+ D
Sbjct: 644 SGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTAD 685


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/702 (34%), Positives = 385/702 (54%), Gaps = 55/702 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+  A    + +P+ S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIAEL+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASDDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF---LK 643
            +   +       ++T   Y+    LL+ + KG   +V+++ + A  ++R+        +
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKG---MVKKTALKAYDSSRQAGVIAINFR 665

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR 683
              EE +       GD V ++    + + FS   DQ+  M R
Sbjct: 666 TEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGR 707


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 337/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    +DN     E ++  ++E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDINAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/696 (31%), Positives = 392/696 (56%), Gaps = 24/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             RR+   + ++  +      ++E+E   V ++  G+I+     S + S +     ++ D
Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L   +    GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEE-KMKLVVKVTGDH 660
           + D          + +G     E  E+    T + K+  + K+  +E ++  V  V  + 
Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQEDRIIAVAPVVLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + ++ +N   L F+I+++P + ++  GV+  + KDG
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 349/616 (56%), Gaps = 27/616 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKRF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++E
Sbjct: 417 EFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
           +   V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ
Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFV 607
            ++ L    D V AF+
Sbjct: 589 NMLSLEPG-DSVNAFL 603


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGREARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +A+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D PE  I++L+  I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  ++SR              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I  E  NL+++ 
Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ ++K  F        RR+   E++        + +I + 
Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I+        + +       A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/743 (32%), Positives = 422/743 (56%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ +++D V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDATIDIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+KGL+ A   +DE+I +IR +E++   +  +V  F+ T NQ  AI+++RL
Sbjct: 363 LNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQSTAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN      N+I   + EVK+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + +   +  G  I  +     N+ I+ A V    
Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+V+  G   +++ ++I     K   K+F  +K+S ++ +    ++     + 
Sbjct: 597 INSTQHLLLVTKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +  I +   +Y 
Sbjct: 654 CIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDQIISALSLQTNKDII-IFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           + + +L+  ++  + G+  LV K
Sbjct: 713 KIDQNLIPIYIRPKKGIRILVEK 735


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 340/564 (60%), Gaps = 40/564 (7%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ +   A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGII 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG  R+RA+  +E  G+    IV+ E+PYQV K+RLIE IA L   K+I  + +
Sbjct: 180 DAYNTGRGRVRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISE 238

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDES  D +R+V+  K  ++  +++M +++  + MET F + + +    + P+V  L  
Sbjct: 239 VRDESDRDGIRVVIELKKDAM-SEIVMNNLYKSTPMETTFGIIL-LAVYNKEPKVFTLPE 296

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           +L  +++HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  
Sbjct: 297 LLNVFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEK 356

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  RF L+  Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I 
Sbjct: 357 LELRFGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIK 416

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E++E +S S  L     ++ E+   D       +I  EP+ V I++ G+++ +   
Sbjct: 417 EELSEIREKYS-SKRLTDIEDSYDEIDIED-------LIPNEPMVVTITHNGYVKRVPIK 468

Query: 537 SVDLSALHFKEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGN 579
           S +      + G   K+A+  H            T D ++ ++  G     K Y +P G 
Sbjct: 469 SYEKQ----RRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEG- 523

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIV 603
             S    G+A+  LI+L  ++ I+
Sbjct: 524 --SRTAKGKAVVNLINLRPDEKIM 545


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 333/581 (57%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  M +MGL       
Sbjct: 14  DENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGHV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG++D D  AA RYTE
Sbjct: 74  KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG SGIAVGMAT++  
Sbjct: 133 ARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNVAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E    A+ L+DNP  S+  L+ YI GPD P GG+IV   E I E+Y  GRG F+ R
Sbjct: 193 HNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIKEAYETGRGAFKTR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A+  +E V      I+VT++PY V   ++IEKI E   A R+  +  +++  +    +R+
Sbjct: 252 AKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLRL 311

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN   +P+ +++ ++  + +E  F +N   L  G+ P+ + L  +L+ +L HR +V
Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PRTLGLKEMLQVFLDHRLDV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  +++ F L+E Q 
Sbjct: 370 TTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMTAFDLSEAQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE---- 484
           + IL LRLR L K    ++++E D LLA+   +  +L   +     +  E+REV +    
Sbjct: 430 NYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVKKELREVSDRLGT 489

Query: 485 ------IFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
                 + S  T +G              VSR+ K    Q  I  +P  VV+S+ G +  
Sbjct: 490 PRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLDLQ--IPDDPCVVVLSSTGALAR 547

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           ++     L        D  ++ L +    ++ +++ DG A+
Sbjct: 548 VEGGD-PLEPGPRAASDGWRVQLPSTARSQVAVVTEDGIAH 587


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 245/765 (32%), Positives = 405/765 (52%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 15  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEA
Sbjct: 75  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEA 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P H
Sbjct: 135 RLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPH 194

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    +DN     E +++ + E I GPDFPT G+IV + + I ++Y  GRG  
Sbjct: 195 NLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGT-QGIHDAYTTGRGSI 253

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  +G   +V+TE+PYQV     I  IAE +   +I  + +I D+S++ V 
Sbjct: 254 RMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAGISNIEDQSSDRVG 313

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 314 LRIVVVLK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYVNHQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 372 LDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARTGLIELLDVDE 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ E 
Sbjct: 432 IQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDILAKPERQRAIVKDELAEITEK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 492 YGDD-----RRTRIIS---ADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 543

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D +K      T D IL  +T G+ Y   A +L   +    G+ +  L+ 
Sbjct: 544 KGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAARTARGQHVANLLA 603

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMK 651
               + I        Y+    L++ +  G     + +E  +N   G   + +   +E + 
Sbjct: 604 FQPEERIAQVIQIKSYEDAPYLVLATKNGLVKKSKLTEFDSNRSGGLVAVNLRDGDELVG 663

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKICEGLT 710
            V+    D + +V  + + + FS         G+    +Q  +  G  D++   +    T
Sbjct: 664 AVLCSAEDDLLLVSAHGQSIRFSATDEALRPMGRATSGVQGMRFNGEDDLLSLNVVREGT 723

Query: 711 W--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  + ++G    R+  +     G RGG G L  +  PR G  + +
Sbjct: 724 YLLVATSGGYSKRTAIEEYPVQG-RGGKGVLTVQYDPRRGSLVGA 767


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/621 (34%), Positives = 354/621 (57%), Gaps = 38/621 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ +SEPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPT-GGIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G  P  + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
            F        RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +          
Sbjct: 480 RFGDE-----RRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531

Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580
               +  +  ++GD ++  +++ T D +L  +  GK Y+               LP  NL
Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPIVNL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQD 601
           L     GE +Q ++++    D
Sbjct: 592 LQLE-KGEKVQAVVNIPEGAD 611


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/587 (35%), Positives = 345/587 (58%), Gaps = 20/587 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM +        ++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   + LI G GN+G++D D AAA RYTEAR++ +A  IL+ +
Sbjct: 78  PHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAMEILRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+  V F+D ++    EPVV PS++PNLL NGTSGI+ G AT IP H+++E  +A +A++
Sbjct: 138 DKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETIDACIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             PE+++E+L+  + GPDFPTGGII+   E I E+Y  G+G   +R++  +E+V  G   
Sbjct: 198 ARPEMTVEELMGIVKGPDFPTGGIIM-GEEGIREAYTTGKGRIYIRSKVEIEDVRGGRQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           I +TEIPYQV KSRL+  +  + + K++  + ++RDES  + +RIV+  K  + D + ++
Sbjct: 257 ITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKKEA-DANGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +   +D++  +  NM V  + + PQ + +  IL  ++ H++EV+  R+ + ++  + R
Sbjct: 316 AYLLKKTDLQVTYNFNM-VAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQYELEKAEER 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +++GL+ A   +DE+IA I   +N    +  +V+++  +E Q DAIL L+L  L  LE
Sbjct: 375 AHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ E      +   + S+L S K+    I  E+ E++E +     + RR +   EV 
Sbjct: 435 ITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYG----IDRRSSIRGEVE 490

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + M++ E + V +S  G+++     S      DL     KEGD++      +
Sbjct: 491 EL-KVNL-EVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVKEGDAISSVYEVN 548

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           T D +LL +  G+ Y LP   +     +  G A+  ++ +  +  IV
Sbjct: 549 TIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIV 595


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 335/594 (56%), Gaps = 64/594 (10%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+  DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ + ALA+IDNP+I +E L+EYI GPDFPT   I   R  IV
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATI-SGRSGIV 179

Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           E+Y+ GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KR+  + 
Sbjct: 180 EAYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES +D   ++    R    ++++  ++  + ++  F +NM  L  G+ P++  L  
Sbjct: 240 ALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQ-PRLFNLRD 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +L  ++ HRREV+ RRS + ++    R  IL+GL I+  NIDEII +IR    P   K  
Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358

Query: 417 MVSR----------------------------------FSLTENQVDAILNLRLRSLRKL 442
           +++R                                  + LTE Q  AIL+LRL  L  L
Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I  E   LL +  ++  +LNS ++    I  E+ E++  F      G  R T  ++
Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNF------GDERKT--DI 470

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIA 554
           + A      + +I +E + + +S+ G+++        + +      +A   K+ D ++  
Sbjct: 471 TAAAHDISMEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERL 530

Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             A+T D IL  ST G     K Y LP   L S    G+ I  L+ L  ++ I 
Sbjct: 531 WVANTHDTILCFSTRGRIYWMKVYQLP---LASRASRGKPIVNLLPLEADERIT 581


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 340/585 (58%), Gaps = 33/585 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K +
Sbjct: 14  VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRNFSKCS 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPHGD ++YD++VRL QP+  RYPL++GQGNFG+   D AAA RYTE +M
Sbjct: 74  RVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGDDGAAAPRYTECKM 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ ++E  VDF+D Y+  + EP V PS+FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 134 APLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A  L+ +PE S E+ LE ++    GPDFP G  I+  R+ I ++YR GRG    
Sbjct: 194 REVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATIL-GRKGIEDTYRTGRGSITQ 252

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +G  C+VVT++PY V    L  KIA  +   ++  + D+RDES+     R
Sbjct: 253 RAVVEVEEI-QGRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIADLRDESSGRTGQR 311

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  + ++  F  NM  + +  VP+ + LD  L+ W+ H+ E
Sbjct: 312 LVIVLK-RDAVAKVVLNNLYKHTSLQENFSANMLAI-VDSVPRTLSLDSFLRLWVKHQVE 369

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+G L A   +DE+IA+IR   + D+ +  ++    + E Q
Sbjct: 370 VIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARSGLMDLLEVDEIQ 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+L+LR L  LE  +I+ E + +  +  +   +L +  +Q   ++ E+ E+ E + 
Sbjct: 430 ANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYILATPARQREIVSEELDEIVERYG 489

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVD 539
                  RRT    ++  D     + +I +E + V I+  G+ +  ++H           
Sbjct: 490 DD-----RRTKI--MAGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQNHLYRAQHRGGKG 542

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
           +   + +  D ++      T + +L  +  G     KAY LP G+
Sbjct: 543 IKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGS 587


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/704 (34%), Positives = 387/704 (54%), Gaps = 39/704 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ + L+  +E  +L Y+LS I  RA+PD RDG KPVHRRI+++M + G        K 
Sbjct: 11  NVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKC 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEA 134
           A++VG+V+ + HPHGD ++YD+LVR+AQ F   +PLI G GNFG+ D  +  AA RYTE 
Sbjct: 71  AKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L G+DED VDF   Y+ +  EP V P++FPNLL NG+ GIAVGMAT IPSH
Sbjct: 131 RLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A   LID+PE ++++L+ ++ GPDFPTGGII+  R+ I ++YR GRG  ++RA
Sbjct: 191 NLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIIL-GRDGIRDAYRTGRGSVKLRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD----ESAEDVR 310
              +EE  R  + IVVTEIP+Q     + +KI  L+  K   LLE IRD     +  + R
Sbjct: 250 VATIEE-ARSGYQIVVTEIPFQTSVEVIADKIRHLVEEK---LLEGIRDMKNFSAGSETR 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+  K R  +P++++ +++ L+ ++T FP+ M  L  G  P+ + L G+ + ++ H+RE
Sbjct: 306 FVIELK-RDANPNVVLNNLYRLTPLQTSFPIQMLALVDG-APRTLNLLGLCQIYVDHQRE 363

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTEN 426
           V+ RRS FR+     R+ I++GLL     +D +IA IR  +       +     F  +E 
Sbjct: 364 VIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFGFSEL 423

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL++ L  L +L   +++ E   L A   +++++L +  Q+ + +  +     E+ 
Sbjct: 424 QANHILDMTLGRLTRLGREELEEEAATLRATIAELEAIL-ADAQRLSAVVKD-----EML 477

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541
           + + +  + R T  EV   D A   + +IE EPI V+IS  G+I+++   S         
Sbjct: 478 AATAEYRQARRTRFEVDPGDFAA--EDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGR 535

Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
                  K+ D +   + +    R+L+ S+ G+ Y L    L  L     G A+  L+ L
Sbjct: 536 GVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I +      +     L+  +  G       +E   + R G   + V  ++++  V
Sbjct: 596 ADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSV 655

Query: 654 VKVTGDHVAVVGENR-KLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           V  T +H  VV   R ++L F + ++    R   GVR     DG
Sbjct: 656 VVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRSIRRADG 699


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 337/604 (55%), Gaps = 60/604 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L++NP+  IE+L+  +  PDFPT  +I      + + YR GRG   +RAR   E
Sbjct: 191 LDACLKLLENPDTDIEELIALVKAPDFPTAALIY-GLSGVHDGYRTGRGRVVMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ +G+   I+V E+PYQV K  L+E+IAEL+  K+I  + +IRDES +    V+    R
Sbjct: 250 DLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           +  P++++ ++F  + ++  F +NM  L  G+ P+ + L  +L  +L+HRREV+ RR+ F
Sbjct: 310 NEVPEVVLNNLFKQTQLQDTFGMNMVALVDGK-PRTLNLKQMLDCFLSHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408
            ++    R  IL+GL +A  N+DEIIA+I+                              
Sbjct: 369 ELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVEEMLARAL 428

Query: 409 ----NEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                 D   P   +    + L++ Q  AIL LRL+ L  LE+ +I +E   ++   + I
Sbjct: 429 AASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREVM---DVI 485

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF--CEVSRADKATLQQAMIEKEP 519
             LL+         A  + E+  I  +  D  R        E++  D       +I  E 
Sbjct: 486 TDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIED-------LIAPED 538

Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+         R+ +       A   K+ D +     A+T D IL  S+ G+
Sbjct: 539 MVVTLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGR 598

Query: 572 AYTL 575
            Y L
Sbjct: 599 VYWL 602


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/743 (31%), Positives = 422/743 (56%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+ GL+ A   +DE+I +IR +E++   +  +V  F+ T NQ  AI+++RL
Sbjct: 363 LNKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIG 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + +   +  G  I  +     N+ I+ AF+    
Sbjct: 537 QGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+VS  G   +++ ++I     K   K+F  +K+S ++ +    ++     + 
Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N   + ++I+ IP  S   KGV+  + KD  I   +     + +  I +   +Y 
Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDHIISALSLDNNKDV-LIFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           R + +L+  ++  + G+  LV K
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 310/530 (58%), Gaps = 20/530 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V EN+  + +   +   +L YA S I  RA+PD RDG KPV RRI+  MS+MGL      
Sbjct: 9   VAENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQMGLRPEKGH 68

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS  +VGEV+GKLHPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 69  VKSQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYT 127

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  ++  +DED VDF   Y+  + +P V P+ FP LL NG  GIAVGMAT+I 
Sbjct: 128 EARLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIAVGMATNIA 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   LIDNPE +   L+ ++ GPD P GGIIV   + I E+Y  GRG F+ 
Sbjct: 188 PHNLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIV-GLDGIREAYETGRGAFKT 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA+  VE V      +V+TE+PY V   R+IEKI E + +K++  + ++ +  +    VR
Sbjct: 247 RAKITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNLTDRHHGVR 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN   +P  +M  +F  + +E  F +N   L  GR P  + L  +L+ ++ HR  
Sbjct: 307 LVVEVKN-GFNPQAVMSQLFKHTPLEDNFSINAVALVDGR-PMTLGLKQMLEVYVKHRLS 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RRS FR+Q    R+ +++GLL+A ++ID++IAIIR+    D  +  ++  F L+E Q
Sbjct: 365 VIERRSQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMDVFELSEIQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL+LRLR L K    ++++E   LL++ E +  +L S +     +  E+ EV +  +
Sbjct: 425 ADHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILGSEQALRTVVRDELVEVSKRLA 484

Query: 488 KSTDLGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVIS-NRGWIR 531
                  RRT        +V  A KA      I   P+ VV++ N G IR
Sbjct: 485 TP-----RRTVLLSADPQQVETAGKAAAVPLEIPDAPVQVVLTANGGLIR 529


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
 gi|332674409|gb|AEE71225.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 891

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 333/581 (57%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  M +MGL       
Sbjct: 14  DENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGHV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG++D D  AA RYTE
Sbjct: 74  KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG SGIAVGMAT++  
Sbjct: 133 ARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNVAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E    A+ L+DNP  S+  L+ YI GPD P GG+IV   E I E+Y  GRG F+ R
Sbjct: 193 HNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIKEAYETGRGAFKTR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A+  +E V      I+VT++PY V   ++IEKI E   A R+  +  +++  +    +R+
Sbjct: 252 AKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLRL 311

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN   +P+ +++ ++  + +E  F +N   L  G+ P+ + L  +L+ +L HR +V
Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PRTLGLKEMLQVFLDHRLDV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  +++ F L+E Q 
Sbjct: 370 TTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMTAFDLSEAQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE---- 484
           + IL LRLR L K    ++++E D LLA+   +  +L   +     +  E+REV +    
Sbjct: 430 NYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVKKELREVSDRLGT 489

Query: 485 ------IFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
                 + S  T +G              VSR+ K    Q  I  +P  VV+S+ G +  
Sbjct: 490 PRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLELQ--IPDDPCVVVLSSSGALAR 547

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           ++     L        D  ++ L +    ++ +++ DG A+
Sbjct: 548 VEGGD-PLEPGPRAASDGWRVQLPSTARSQVAVVTEDGIAH 587


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/485 (42%), Positives = 302/485 (62%), Gaps = 9/485 (1%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S++ V E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL
Sbjct: 4   SRSSSPVSERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGL 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KSAR+VGEV+GKLHPHGD  +YD+LVRLAQ F  R PL+ G GNFG++D D  
Sbjct: 64  RPDRGHVKSARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A  + + +DED VDF   Y+ +  +P V P+ FPNLL NG +GIAVG
Sbjct: 123 AAPRYTEARLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+  AA  L+ NP+ ++E+L+E++ GPD P+GGIIV   + I ++Y  G
Sbjct: 183 MATNMAPHNLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIV-GLDGIKDAYTNG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--E 304
           RG FR RA+  +E +G     IV+TE+PY V   R+IEKI + + AK++  + D+ D  +
Sbjct: 242 RGSFRTRAKSSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTD 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
               +R+V+  K    DP  ++E ++ L+ +E  F +N   L  G+ PQ + L  +L+ +
Sbjct: 302 RNNGLRLVIGIKT-GFDPKAVLEQLYRLTPLEDSFGINNVALVDGQ-PQTLGLRDMLRVY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           + HR  V+ RRS +R+     R+ +++GLLIA L+IDE+I +IR+ D   + +  +   F
Sbjct: 360 IDHRIRVVTRRSEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQEVF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q + IL LRLR L K    ++++E D L AE  ++  LL S      Q+A E+  
Sbjct: 420 DLSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLGSETLLRQQVAKELDA 479

Query: 482 VKEIF 486
             E +
Sbjct: 480 AAEAY 484


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/663 (34%), Positives = 357/663 (53%), Gaps = 74/663 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   +   YL+Y++S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARIV
Sbjct: 11  VSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE R+ ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++++ VDF   Y+  + EP + P+K P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 SHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L  + NP+ SI++L+EYI  PDFPTGGII      + E YR GRG   +RA+  +E
Sbjct: 191 IDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIY-GYSGVREGYRTGRGRVIMRAKTHIE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           +  +G+   I++ EIPYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    R
Sbjct: 250 DFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ ++F L+ ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ F
Sbjct: 310 GEVADVVLNNLFKLTQLQDTFGMNLVALVNGQ-PKLLNLKELVVYFLQHRREVITRRTVF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR--------------- 420
            ++        L+GL +A  NIDE I II+    P      ++SR               
Sbjct: 369 ELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRVD 428

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+ +Q   ILN+ LR L  LE+ +I S  + 
Sbjct: 429 EDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYEA 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
            +     +  +L+  ++    I  E+  +K  ++    +   R +  E +  +  T  + 
Sbjct: 489 AMDAITDLLDILSKPERITAIIGEELIAIKNEYT----IKDARRSQIEYNAVEFET--ED 542

Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +SN G+I+S  L  +           A   K+ D ++    A+T D +L 
Sbjct: 543 LITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVLC 602

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCK 613
            S+ G+ + L    +  G     G  I  L +L  N+ I             F++ +T K
Sbjct: 603 FSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQFIFLATAK 662

Query: 614 LLV 616
            +V
Sbjct: 663 GVV 665


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 365/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 345/586 (58%), Gaps = 23/586 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ + YL YA+   K+RA+PD+RDG KPVHRRI++   ++       + 
Sbjct: 11  DNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V +AQ F  R  LI G GN+G++DGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +A  +L+ +D++ VD    Y++ + EP V PS++PNLL NGT GIAVG+AT+IP 
Sbjct: 131 ARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN EI+ ++L+ Y+ GPD PTGGI++  + SI+ +Y  G G   +R
Sbjct: 191 HNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILI-GQNSILAAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE P++  K++L++ I+E+   KR    +  + DIRDES    
Sbjct: 250 AKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDESDRSG 309

Query: 309 VRIVLFPKNRSLD--PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           VR V+  +  + +   D +++ +F  +D++     NM  L+ G+ PQ M L  I+K ++ 
Sbjct: 310 VRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGK-PQTMGLKTIIKHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++E++ RR+   +   ++R  I++G + A   +DEII  IR     K     ++S+F  
Sbjct: 369 HQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAGVNLISKFGF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q +AIL L L  L  LE    + E   L    +K+  +L+  K+    +  E++EV 
Sbjct: 429 TEIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIKKLKKILSEEKELLKVVKNELKEVS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSA 542
           + +        R+T+  +     K  +++ +I  E + + +S  G+I+ +   + + L+A
Sbjct: 489 DKYRNP-----RKTSIIKDDNEAKIDVEE-LIVVEDVMITLSKDGFIKRIPLKTFNRLNA 542

Query: 543 ----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
               + ++EGD LK    ++TT+ ILL +  G  Y     N+  G+
Sbjct: 543 KAEDIEYREGDELKFLFKSNTTESILLFTNKGNMYQTKGINIPEGK 588


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/633 (36%), Positives = 357/633 (56%), Gaps = 45/633 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ EA    + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLKIA-LHAH--------TTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++ A L A         TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +   +       ++T   YD    LL+ + KG
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 221/597 (37%), Positives = 344/597 (57%), Gaps = 33/597 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 23  VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 83  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 142

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 143 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 202

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    ++NP++    +++ L+E + GPDFPT G+IV + ++I ++YR GR
Sbjct: 203 PPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHGLIVGT-QAIQDAYRTGR 261

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG  C+VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 262 GSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSG 321

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              +RIVL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++
Sbjct: 322 RTGMRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYV 379

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    
Sbjct: 380 EHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLE 439

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q  +I  E  E+
Sbjct: 440 IDEIQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQ-RRIVSE--EL 496

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            EI +K  D   RRT        D     + +I +E + V I+  G+         RS +
Sbjct: 497 GEIVAKWGD--ERRTKIVPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQR 551

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                +S    ++ D +       T D +L  +  G     KAY LP  + ++   H
Sbjct: 552 RGGKGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEASRVAKGQH 608


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 230/668 (34%), Positives = 370/668 (55%), Gaps = 39/668 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     +F K A
Sbjct: 21  VEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSFVKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI+GQGNFG+   D AAA RYTE R+
Sbjct: 81  RVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAAAMRYTECRL 140

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 141 SPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGMATNIPPHNL 200

Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+       ++NP+ +    +E L+E I GPDFPT G+IV  R+ I  +YR GRG  R+
Sbjct: 201 REVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLIV-GRDGIESAYRTGRGSIRM 259

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VE+  +G   +VVTE+PY V    LIE IA ++   +I  + +I DES++ +  R
Sbjct: 260 RAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDESSDRIGMR 319

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R     +++ +++  + ++  F  NM  +  G VP+ + LD I++ ++ H+ E
Sbjct: 320 IVVTLK-RDAVAKVVLNNLYKHTQLQHSFGANMLSIVDG-VPRTLRLDQIVRHYVRHQIE 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E Q
Sbjct: 378 VIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVARAGLIDLLTVDEIQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  +  E    + +L   ++Q   +  E+ E+ E   
Sbjct: 438 AQAILDMQLRRLAALERQKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHG 497

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT        D     + +I  E + V I+  G+         R+ K     
Sbjct: 498 DD-----RRTRIVGY---DGDVTDEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKG 549

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
           +     K+ D +       T D +L  +  G     KAY LP  N  +    G+ +  L+
Sbjct: 550 VQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRLKAYELPEANRTA---RGQHLANLL 606

Query: 595 DLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEE--SEIIANTRKGKTFLKVSSEEKMK 651
            L  +++I     + D   +  +V +  N  + +   ++  +N   G   + +  ++++ 
Sbjct: 607 ALQPDEEIAQVMQIKDYQARPYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELV 666

Query: 652 LVVKVTGD 659
             V  +GD
Sbjct: 667 GAVLCSGD 674


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 226/679 (33%), Positives = 373/679 (54%), Gaps = 41/679 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+IS + L+E+I  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIES-DESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDET 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVGGR-PRLLSLRECIKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P      +  RF
Sbjct: 357 VEHRHDVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEERF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E++E
Sbjct: 417 GFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPERCKEVMKAELQE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536
           VKE +        RRT   E+   +     +     +P+ + IS+ G+I+       K  
Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528

Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
           +   V       ++ D  +    A     +L  +  G+ Y +   ++  G     G AIQ
Sbjct: 529 ARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            ++ L+   D V AF        L +    N   ++   ++  T++G   KT L+  S  
Sbjct: 589 NMLSLDPG-DSVNAF--------LRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRP 639

Query: 649 KMKLVVKVT---GDHVAVV 664
           +   V+ +    GD V  V
Sbjct: 640 RTNGVIAININEGDEVVDV 658


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 253/745 (33%), Positives = 379/745 (50%), Gaps = 95/745 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  A+KKSARIV
Sbjct: 11  ISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ EI
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATNIPPHNLGEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+  P+  IE L++ +  PDFPT G+I      + E YR GRG   +RAR   E
Sbjct: 191 VDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIY-GLAGVREGYRTGRGRVIMRARTHFE 249

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            +G+     I+V E+PYQV K  L E++AEL+  K+I  + +IRDES +    ++    R
Sbjct: 250 PIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGMRLVIELKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + ++  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ F
Sbjct: 310 GEMPEVVLNKLFKHTQLQDSFGMNMVALVDGK-PRLLNLKQMLVCFLEHRREVVTRRTIF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420
            ++    R  IL+GL +A  N+DEIIA+I+    P                   M+SR  
Sbjct: 369 ELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVEEMLSRAL 428

Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + L+E Q  AIL LRL+ L  LE+ +I  E   ++   + I
Sbjct: 429 ADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREVM---DVI 485

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF--CEVSRADKATLQQAMIEKEP 519
             LL+   +     A  + E+  I ++  D  R        E++  D       +I  E 
Sbjct: 486 TDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIED-------LITPED 538

Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+         R+ +       A   K+ D +     A+T D +L  S  G+
Sbjct: 539 MVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGR 598

Query: 572 AYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    +  G     G+ I  L  L   + I        +D    + + +S+G     
Sbjct: 599 CYWLKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATSEGTV--- 655

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDH---VAVVGENRKLLIFS------ 674
                       KT L   S  +   ++ V    GDH   VA+      +++FS      
Sbjct: 656 -----------KKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAV 704

Query: 675 ----IDQIPEMSRGKGVRLQSYKDG 695
                D  P     +GVR  + +DG
Sbjct: 705 RFAETDVRPMGRDARGVRGMTLEDG 729


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420
           FR++       I +G  +A  NID II +I+      E K K +           M++R 
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 232/717 (32%), Positives = 395/717 (55%), Gaps = 24/717 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F  A++K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI  QGN G+IDGDSAAA RYTEA
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+ LIL+G+++  VD+   +++   EP+V PS  PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +  E+ +AA+  I     +++ LL ++ GPDFPTGG +V+  + I +++  GRG   +R+
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGG-VVQGLDGIKKAFETGRGKVIIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I++TE+PY+V K+ L++++ EL + +++  + ++RDE+  D   V+ 
Sbjct: 244 RATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++      +D++  +  NM V    R P+ M +  +L  +L+H ++V+ R
Sbjct: 304 ELKKEADAEGVLHFYLKQTDLQIAYNYNM-VAIHERTPRQMGVLALLDAYLSHVKDVVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+SF ++   RR E++  L+ A   +DE +A+IR   N+ + K  ++ RFS T+ Q +A+
Sbjct: 363 RTSFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIERFSFTDRQAEAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  E  +++ +LN  K +   I  E+  +KE  +    
Sbjct: 423 VMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILNDEKTRNRLIIKELTVLKEQVADK-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549
             RR T   EV      T  + MI  E   V +S  G+I+  S++S          KE D
Sbjct: 481 --RRSTVEAEVEELKLKT--EVMIAVEETMVFVSKNGYIKRSSMRSFGATNDLPEMKEQD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            L     A TTD +++ +  G    +P   L     +  G+ +  L+ L+    I++  +
Sbjct: 537 RLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVPLDPGDRILSVDL 596

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHV 661
              +D T   L V+ +G     + S+  A  RK K    V   + +E +   +    + +
Sbjct: 597 VRTFDETSHCLFVTRQGMVKRSKLSDYNAQ-RKSKPLQGVRLRADDEVLYAKISTGQEQL 655

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
            +  ++   L F+ D +P +  R  GV+  + +D   ++  I FK    +  +   G
Sbjct: 656 FLTTQHGFGLWFTEDDVPVVGVRAAGVKAINLRDQDVVAGAIGFKQAPNIVLLTQRG 712


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 348/603 (57%), Gaps = 38/603 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+     +KKSARIVGEV+GK
Sbjct: 2   MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEARM+++A  +L+
Sbjct: 62  FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM T+IP HN+ E+      
Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ + + L++ I GPDFPT G I+  R  I  +Y  G+G   VRA   +E    G 
Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGR 240

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +    +     R     ++
Sbjct: 241 ERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVV 300

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + M+  F +NM  +  G  P  + L  +L+ +L H+++V+ RR+ F +   + 
Sbjct: 301 LNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEA 359

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  NIDEI+ IIR   + D  K  ++SRF L + Q  AIL++RL  L  L
Sbjct: 360 RAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLDDKQSQAILDMRLVRLTGL 419

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E   L A+      +L   ++    I  E+ ++++ F       +RRT   E+
Sbjct: 420 ERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQKRFGD-----KRRT---EI 471

Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553
             ++  +++ + +IEK+ I + +++ G+I+ +              +  +  ++GD ++ 
Sbjct: 472 GASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEH 531

Query: 554 ALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAIQLLIDLNH 598
            +++ T D +L  +  GK Y+               LP  NLL     GE +Q +I++  
Sbjct: 532 LIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQLE-KGEKVQTVINVPE 590

Query: 599 NQD 601
             D
Sbjct: 591 GAD 593


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 354/599 (59%), Gaps = 27/599 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT GIAVG++T+IP 
Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++ +Y  G G   +R
Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    +  + DIRDES    
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +R V+  K +++D D+   +++ ++  +D++     NM  L+ G+ P+ M L  I+  ++
Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     K     +V +F 
Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLKFG 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AIL L L  L  LE    + E   L  + + +  +L +       I  E++EV
Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537
            E++        RRT   E     K  L++ +I  E + V +SN G+I+   LK++   +
Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     +  GE ++ LI
Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 226/726 (31%), Positives = 407/726 (56%), Gaps = 35/726 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G     AF+
Sbjct: 5   QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ AE +L  +D++ VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L  I +P  S+EKL+E++ GPDFPTGGII +    + ++YR G+G   VR
Sbjct: 185 HNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGII-QGINGLKQAYRTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  VEE+      I+V+EIPY+V K+ L++KI E+ + K++  + +IRDES  D   + 
Sbjct: 244 SKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D   ++  +F  +D++  +  NM  ++  R P+ M L  I++ ++  ++EV+ 
Sbjct: 304 IELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLR-PERMGLKEIIQAYVDFQKEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +R+ F ++  + R+ I+ GL+ A   +D++I  IR ++DK   K  +++ F  +E Q +A
Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLITSFDFSERQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  ++KSE   L    ++ +++LN+  +    ++ E+R+VK+ ++   
Sbjct: 423 IVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNILNNPNELSKVLSAELRQVKKRYATP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548
                R +  +    +    +   + +E + V++S  G+++  SL+S+         KEG
Sbjct: 482 -----RLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYLKRSSLRSYKASAEEDGLKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D        +T D +++L+  G     P   ++  R    GE I   I L  ++ I+ AF
Sbjct: 537 DFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIMETRWKDTGEHISQAIGLADDEIILKAF 596

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK--------VSSEEKM----K 651
               +D     L+ +S G  +I   S  + + + G+T+ K         +++ K+    K
Sbjct: 597 DVKNFDEPVSFLIATSDG--YIKRTS--LKDFKPGRTYRKKAAVYIKLKAADAKVVNVAK 652

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
           L  + T + + +   N   L + + ++PE+  R  GV+    ++  I++ +     + + 
Sbjct: 653 LTSQSTKETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLREDEIANFVLVNDHDQIG 712

Query: 711 WIDSAG 716
            I + G
Sbjct: 713 LITNRG 718


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 237/715 (33%), Positives = 379/715 (53%), Gaps = 54/715 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      +KK AR+V
Sbjct: 3   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDSAAA RYTE R++++
Sbjct: 63  GEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAVGMAT+IP+HN+ E+
Sbjct: 123 GEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGEV 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +   A IDNPEIS + L+E+I  PDFPTG  I    + + ++Y  GRG   +RA+  +E
Sbjct: 183 IDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYETGRGRVVMRAKAEIE 241

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
                   IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+  + +RIV+  K R
Sbjct: 242 S-DESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK-R 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L  GR P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYFVEHRHDVTIRRAQF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            ++    R  IL+ L+ A  NIDE++ IIR    P      +  RF   E Q  AI+++R
Sbjct: 359 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKRFDFDELQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EVKE +        R
Sbjct: 419 LSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEVKEKYGDD-----R 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKE 547
           RT   E+   +     +     +P+ + IS+ G+I+       K  +   V       +E
Sbjct: 474 RT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQARGGVGSKGARTRE 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y +   ++  G     G AIQ ++ L    D V A
Sbjct: 531 KDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSLEPG-DSVNA 589

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GD 659
           F        L +    +   ++   ++  T++G   KT L+  S  +   V+ +    GD
Sbjct: 590 F--------LRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGD 641

Query: 660 HVA------------VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            V             +   N +   F    I  M R   GVR     D G  +V+
Sbjct: 642 EVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVV 696


>gi|308177798|ref|YP_003917204.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 249/723 (34%), Positives = 386/723 (53%), Gaps = 44/723 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  M++MGL       K
Sbjct: 15  ENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMAQMGLRPEKGHVK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VRLAQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 75  SARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED V+F   Y+ +  +P V PS FPNLL NGT+GIAVGMAT++  H
Sbjct: 134 RLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGTTGIAVGMATNMAPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +PE ++E+L+++I GPD P+GG  V   + I ++YR GRG FR RA
Sbjct: 194 NLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGG-SVTGLDGIKDAYRTGRGLFRTRA 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E++      +VVTE+PY V   ++IEKI + +  K+I  + D+ D  +    +++V
Sbjct: 253 TVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISDVVDLTDRHHGLKLV 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P+ ++ S++  + ME  F +N   L  G+ P+ M L  +L  ++ HR +V+
Sbjct: 313 IELKN-GFNPNAVLASLYKYTPMEDSFGINNVALVNGQ-PRTMGLRELLTVYVDHRLDVV 370

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR++ R+   + R+ +++GLLIA ++ID++IAIIR+ ++       +++ F L+E Q  
Sbjct: 371 RRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARERLMTVFDLSEPQAS 430

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-- 487
            IL LRLR L K  + ++++E + L  E E++ ++L S +   N ++ E+ ++ E F   
Sbjct: 431 HILELRLRQLTKYSKLELETEAEQLRKEIEELRAILESDQLLRNLVSDELGQMAETFGTP 490

Query: 488 ------KSTDLGRRRTTFC--EVSRADKATLQQAM-IEKEPITVVISNRGWI-RSLKSHS 537
                 KS  L   + T    EV    KA L  AM +   P  V++S  G I R+     
Sbjct: 491 RRTKLLKSAQLAPLKGTALPEEVGTGKKAKL--AMEVSDTPCWVLLSATGQIARTQDRTD 548

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--------AYTLPAGNLLSGRGHGEA 589
           +D SA   K  D L   + +     I  L+T G+           LP  +      HG  
Sbjct: 549 LDHSAARIKH-DVLTSQVASSARGEIGALTTTGRIVRISLIDVPVLPESHGFPQLAHGVP 607

Query: 590 IQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I   + L   + +      +       K  VV      + +   E  A T K K  +  +
Sbjct: 608 IAEFLKLGQAETVAALVPLNQVVAIGTKNGVVKRVTPDYPLNRDEFEAITLKDKDVVVAA 667

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
           +  +         D +  + ++ +LL FS   +    R  G  +   K G    VI F +
Sbjct: 668 TPAQ-------DADELVFITKHAQLLRFSASVVRAQGR-TGQGMSGIKLGADDQVIFFGV 719

Query: 706 CEG 708
             G
Sbjct: 720 VPG 722


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 321/528 (60%), Gaps = 21/528 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 43  VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE RM
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +     +D+P+ S  +LLE +I    GPDFPTG  I+   + I ++YR GRG   +
Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE++     R
Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    D  +  +++   + + Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q   +  E+    EI +
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDEL---DEIVA 515

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           K  D   RRT     S        + +I +E + V ++  G+I+  K+
Sbjct: 516 KYGD--ERRTRILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKA 558


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 241/702 (34%), Positives = 385/702 (54%), Gaps = 55/702 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +R  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G      + K +
Sbjct: 26  IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L+ GQGNFG+   D AAA RYTE +M
Sbjct: 86  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +D+D VDF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+
Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205

Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+  A    + +P+ S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +
Sbjct: 206 REVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE  +G  C+VVTE+PY      L  KIAEL+ + RI  + DIRD+S+     R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R   P ++M +++  + ++  F  NM  L +  VP+ + LD  +  W+ H+ E
Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++   I + L+ A   +DE+IA+IR   N +     +     + E Q
Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             AIL+++LR L  LE  +I     EL+ L+A+ + I   L S  +Q   I+ E+ E+ +
Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASDDRQREIISTELAEIVD 499

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT       AD    ++  I  + + V I+  G+ +  ++   DL  + 
Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548

Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588
            + G  ++         +A    TT+   IL  +  G+ Y      LP     +  GH  
Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVA 608

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF---LK 643
            +   +       ++T   Y+    LL+ + KG   +V+++ + A  ++R+        +
Sbjct: 609 GLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKG---MVKKTALKAYDSSRQAGVIAINFR 665

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR 683
              +E +       GD V ++    + + FS   DQ+  M R
Sbjct: 666 TEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGR 707


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 227/645 (35%), Positives = 357/645 (55%), Gaps = 39/645 (6%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+   +   V + ++ V ++  ++  YL YA+S I  RA+PD+RDG KPVH+R+++AM
Sbjct: 12  GGDSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAM 71

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR+VG+V+G  HPHGD ++YD+LVRLAQ +  R PL+   GNFG+ 
Sbjct: 72  YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSA 131

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE ++  +A  +L+ +D+D VDFR  Y+   SEPVV P++FPNLL NG+S
Sbjct: 132 GNDPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSS 191

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +     +DNPE   E+LL+ +I    GPDFPT G+IV  R 
Sbjct: 192 GIAVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKR- 250

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I E+YR GRG   +RA   VEE  RG   +VVTE+PYQV    L  KIA+L+   +I  
Sbjct: 251 GIEEAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITG 310

Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + D+RDES+     R+V+  K R     +++ +++  + ++  F  NM  L  G VP+ +
Sbjct: 311 IADVRDESSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTL 368

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            LD +++ W+ H+ EV+ RR+ + ++  + R  IL+ LL A   IDE+I +IR   + D+
Sbjct: 369 RLDQMIRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQ 428

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + + Q  AIL+++LR L  LE   + +E D L+A+    + +L S  +Q 
Sbjct: 429 ARTGLMDLLEIDDIQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDILESDTRQR 488

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
           + I  E+ E+ E +        RRT        +     +  I +E + V IS  G+   
Sbjct: 489 SIIREELGEIVEKYGDE-----RRTHIIPF---EGDMRMEDFIAEEDVVVTISRGGYAKR 540

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
                 R+ K     +     K+ D ++      T + IL  +  G     KAY LP   
Sbjct: 541 TRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEA- 599

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             +    G+ +  L+     ++I        Y++   L++ + +G
Sbjct: 600 --ARDARGQHVANLLPFQPGEEIAQIMALRDYEAAPYLVLATREG 642


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 339/597 (56%), Gaps = 33/597 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 22  VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 82  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 142 TECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKI 201

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    +++PE     ++E LL  + GPDFPT G+IV  R  I ++YR GR
Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIV-GRAGIQDAYRTGR 260

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 320

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              +R+VL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++
Sbjct: 321 RTGMRLVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYV 378

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
           AH+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     D  +  ++    
Sbjct: 379 AHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLE 438

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q  +I  E  E+
Sbjct: 439 IDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDILAKPERQ-RRIVSE--EL 495

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            EI +K  D   RRT        D     + +I +E I V I+  G+         RS +
Sbjct: 496 GEIVAKWGD--DRRTQIIPF---DGEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQR 550

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                +S    ++ D +       T D IL  +  G     KAY LP  + ++   H
Sbjct: 551 RGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQH 607


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 218/589 (37%), Positives = 337/589 (57%), Gaps = 41/589 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G      + K +
Sbjct: 13  VEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDSGFRPDRGYNKCS 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPLI GQGNFG+   D AAA RYTEAR+
Sbjct: 73  RVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ ++ED VDF D Y+    EP V PS+ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 133 DPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIAVGMATNIPPHNL 192

Query: 197 QEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +  +  +DNP    E ++  L++ I GPDFPT G I+ + + I ++YR GRG  R+
Sbjct: 193 REVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGT-QGIADAYRTGRGSIRM 251

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310
           RA   VEE  +G   +VVTE+PYQV    L+E IA L    +I  + DI DES     +R
Sbjct: 252 RAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIADIADESNSRGGMR 311

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R     +++ +++  + ++  F +NM  L  G VP+ + LD +++ ++ H+ +
Sbjct: 312 IVITLK-RDAVAKVVLNNLYKHTQLQYNFGVNMLALVDG-VPRTLRLDQMVRHYVNHQID 369

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + R  +L+GL  A  ++D +I +IR   N D+ +  ++    + E Q
Sbjct: 370 VIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTGLMELLDIDEVQ 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  L A+   +  +L+  ++Q   +  E+ E+ E + 
Sbjct: 430 ATAILDMQLRKLAALERQRILDELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYG 489

Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
                  RRT       +VS  D       +I +E + V I+  G+         RS K 
Sbjct: 490 DD-----RRTKIIPYEGDVSIED-------LIAEEDVVVTITRTGYAKRTKTDLYRSQKR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
               +     K+ D ++      T D +L  +  G     KAY LP  N
Sbjct: 538 GGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEAN 586



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 7/149 (4%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTD 561
           + +Q    E  P  ++ + +G ++  +    D      L  ++ +EGD L  A+ A   D
Sbjct: 608 SVIQIPNYEVAPYLILGTKKGLVKKSRLADFDSPRSGGLIGINLREGDELVGAVLASAED 667

Query: 562 RILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            +LL+S+DG++    A + +L   G   +  L +  N   ++++  V      LLV +  
Sbjct: 668 DLLLVSSDGQSIRFHANDEVLRPMGRATSGVLGMRFNEGAELLSINVIKPGTFLLVATEG 727

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           G A      +     R GK  L +  +EK
Sbjct: 728 GYAKRTAVEDYPVQGRGGKGVLTIQHDEK 756


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 244/696 (35%), Positives = 383/696 (55%), Gaps = 45/696 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK HPH
Sbjct: 5   YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVD 148
           GD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +  + +L+ ++
Sbjct: 65  GDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLLEDIE 124

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ +  LALI+
Sbjct: 125 CETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLLALIE 184

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265
           NPE+   +L+  I GPDFPTGG I+  R  I E Y  GRG   +R    +E +   GR  
Sbjct: 185 NPELEDRELMRLIPGPDFPTGGQIL-GRSGIREMYTTGRGSVTMRGVASIETIEAKGRPD 243

Query: 266 W-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R   P +
Sbjct: 244 RDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAYPQV 303

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R E + RR+ + ++  +
Sbjct: 304 VLNNLFKLTPLQSNFSAYMLALVKGE-PVLLTLRKMLEVFLDFRVETIERRTRYLLRKAE 362

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL GLLIA  N+D IIA+IR   +    +  ++ +F L+E Q DAIL ++LR L  
Sbjct: 363 ERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQFGLSEIQADAILQMQLRRLTA 422

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ E ++LLA+      +L   ++    I  E+  ++  +        RRT   +
Sbjct: 423 LEADKIRLEHEDLLAKITDYKDILARKERVLALITEELGVLRSRYDSP-----RRTEILD 477

Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG------DSLK 552
           V    +  L+   +I  E   V+++  G+++ +     + ++     K G      ++++
Sbjct: 478 V----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVR 533

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTA 605
           + +  +  D +LL S  G  YT+PA  +   S    G  I  L+ +   + I     V+ 
Sbjct: 534 LFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIVQLLPIPREEQITSLLAVSE 593

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662
           F  D+   +LV+ + G           AN R     + +S EE   L    +   GD + 
Sbjct: 594 FAEDA---VLVMLTSGGYIKRTRLSAFANIRS-NGLIAISLEEGDALTWVRLAQPGDSLL 649

Query: 663 VVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG 695
           +   N   + F  S +++  + R  +GVR  + + G
Sbjct: 650 IGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPG 685


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 354/600 (59%), Gaps = 16/600 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F+K
Sbjct: 3   EIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ + +D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A L  IDNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   VRA
Sbjct: 183 NLAEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGG-IVQGIDGIRKAYETGKGKVIVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V  
Sbjct: 242 KADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++   ++  ++  +D++  +  NM  ++ GR P++M +  I+  +L H+ EV+ R
Sbjct: 302 ELKKDVNATSILNFLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+SF ++  + R+ I++GL+ A   +DE+I +IRN    +     +V+ +  TE Q +AI
Sbjct: 361 RTSFDLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVATYDFTETQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E D L  +   +  +L +     N I  E+ E+K+ F +   
Sbjct: 421 VMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHDALLNVIKDELSEIKKQFKQP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  KE 
Sbjct: 479 ----RLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLKER 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +   +  +T D +++ +  G+   +P   L  +  +  G+ +  ++ +  ++ +V  +
Sbjct: 535 DGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVNCY 594


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 226/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEINKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 RLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFIC 700


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 314/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  AT     +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAATSAPLEVPDDPCWVLLSATGLL 523


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 315/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + ++E+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   V+ V      ++VTE+P+ V   ++I KI +L+ AK++  + D++D  + A  +R
Sbjct: 255 RATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL A ++IDE+I +IR+ D   + K  ++ RF+L++ Q
Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFALSDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE + L  E  ++  +L S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVAKKFG 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S    A +    +  +P  V++S+ G +
Sbjct: 493 TE-----RRTVLLESSGTQVAAV-PLQVADDPCRVLLSSTGLL 529


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 240/743 (32%), Positives = 420/743 (56%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   FKKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPFKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +I NP I+I+++L+ + GPDFPTG +I ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAVI-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTQFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+ GL+     +DEII +IR +E++   +  +V  F  T NQ  AI+++RL
Sbjct: 363 LNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIEKIKKYQEILNNSLVLDNEIISRLEEVKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + S   +  G  I  +     N+ I+ A V    
Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQPNETIINALVIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+VS  G   +++ ++I     K   K+F  +K+S ++ +    +V     + 
Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +V +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +  I +   +Y 
Sbjct: 654 CIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           R + +L+  ++  + G+  LV K
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 226/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKEANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSTLEDTAKAIEIDTASL----IAEEDAYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 595 YVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++  N   L F+I+++P + ++  GV+  + K+     S  IC
Sbjct: 655 KLDDVLLISLNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFIC 703


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  +++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 365/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 237/732 (32%), Positives = 388/732 (53%), Gaps = 61/732 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEIES-DESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ E
Sbjct: 417 NLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           VK+ +        RRT   E+  + +    +     +P+ + +S+ G+I+          
Sbjct: 477 VKDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
               V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ
Sbjct: 529 ARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQ 588

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
            ++++  +         D+   +L +++  +        +I  T+ G   KT L+  S  
Sbjct: 589 NMLNIESD---------DAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRP 639

Query: 649 KMKLVVKVT---GDHVAVV------------GENRKLLIFSIDQIPEMSRG----KGVRL 689
           +   V+ +    GD V  V              N + + F+ + I  M R     +G+RL
Sbjct: 640 RANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRL 699

Query: 690 QSYKDGGISDVI 701
               DGG  +V+
Sbjct: 700 ----DGGDDEVV 707


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 240/719 (33%), Positives = 391/719 (54%), Gaps = 46/719 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L Y+ S I  RA+PD RDG KPV RRI++  +E+G+       
Sbjct: 15  EEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELGVRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS RIVGEV+GK HPHGD ++YD+LVR+AQPF  R PLI G GNFG++D D  AA RYTE
Sbjct: 75  KSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DGPAAARYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ + A L++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAVGMAT++  
Sbjct: 134 ARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAVGMATNMAP 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  AA  LI NP  S+++L++++ GPD P GG IV   E I ++Y  GRG FR R
Sbjct: 194 HNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIV-GLEGIRDAYLTGRGSFRTR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRI 311
           A   +E +      IVVTE+PY V   ++IEKI +L+ +K++  + D++D S     +R+
Sbjct: 253 ATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSDRGHGLRL 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN   +PD ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++  R +V
Sbjct: 313 VIEVKN-GFNPDAVLEQLYRLTPMEENFGINNVALVEGQ-PRTLGLKQLLQVYVDFRTDV 370

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+  R+   + R+ +++GLLIA ++IDE+I +IR+ D     K  ++  F L++ Q 
Sbjct: 371 VRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLMDVFDLSDPQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+L+LR L +    +++SE   L  + E++ +LL S +     ++ E+ EV +    
Sbjct: 431 TYILDLQLRRLTRFSRIELESEKSELERQIEELRALLESDRLLLKLVSTELAEVAKKHGT 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWI-RSLKSHSVDLSALHF 545
                 RRT   E S   + T     +E   +P  V++S+ G + R++    V       
Sbjct: 491 P-----RRTVLLESSGQARPTTTATPLEITDDPCWVLLSSTGLLARTVGPEPVTAEGSRS 545

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY--------TLPAGNLLSGRGHGEAIQLLIDLN 597
           +  D+L  A+       + L++T G+          TLP  N     G G  +   +DL 
Sbjct: 546 RH-DALVGAVRTTARGELGLVTTSGRMVRLSALELPTLPPTNGAPSLGGGAPLAAYVDLA 604

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +++ +T     +   ++ + +           +  +T KG  +  +S ++  ++V    
Sbjct: 605 KDEEPLTIVPIGAEAPVVALGTASGVV----KRVSPDTPKGTDWSLISLKDGDRVVGAAV 660

Query: 658 GDH----VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
            D     +  +  + +LL F+          K VR Q    GG++ V   K+  G + +
Sbjct: 661 ADRDDLDLVFITSDAQLLRFA---------AKTVRPQGRSAGGMAGV---KLAAGASAV 707


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 355/598 (59%), Gaps = 25/598 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++   ++       + 
Sbjct: 11  DNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD+AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSIDGDNAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG  GIAVG+AT+IP 
Sbjct: 131 ARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E  +A +A IDN +IS ++L+ YI GPD PTGGII+   ++++ +Y  G G   +R
Sbjct: 191 HNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALLSAYEKGEGRVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308
           A+  +E++    + I++ E PY+  KS++++ I+E+   K+    +  + DIRDES  + 
Sbjct: 250 AKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRDESDRNG 309

Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +R V+ F K+ SL+  + +++ +F  ++++     NM  ++ G+ P+ + L  ILK ++ 
Sbjct: 310 IRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGK-PETLGLKAILKYYVE 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423
           H++EV+ RRS   ++   +R  I++G + A   +D+I+  IR+    K     +V++F  
Sbjct: 369 HQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDSEQNLVNKFGF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +  Q  AI+ L L  L  LE    + E  NL  E + ++ +L+S K+ +  +  E+ EVK
Sbjct: 429 SMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKEIKALEKILSSEKELFKVVKKELEEVK 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SV 538
           E +        RRT         K  +++ +++ E I + +SN G+I+ +        + 
Sbjct: 489 EKYGDP-----RRTEIVHDDEQAKIDIEELILD-EDIVITLSNEGYIKRVADKYYRRINP 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
            +  + ++EGD     L+ +T D +++ + +G  Y +   N+  +  +  GE +  LI
Sbjct: 543 KVEDIEYREGDFNTYLLNGNTKDNMMIFTDEGNLYQIRISNIPEMKWKEKGERLDTLI 600


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 221/587 (37%), Positives = 328/587 (55%), Gaps = 40/587 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   ++  YLAYA+S I  RA+P++RDG KPVHRRI++AM + G    A F K  
Sbjct: 30  INYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMYDGGFRPNAGFYKCM 89

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+ K HPHGD +VYD+L RL QP+  RYPLI+GQGNFG+      AA RYTE +M
Sbjct: 90  RVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPGNLGPAAPRYTECKM 149

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ +DE+ VDF D Y+  D EPVV P++FPNLL NG+ GIAVGMAT IP HN+
Sbjct: 150 APLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEGIAVGMATRIPPHNL 209

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E     +D+PE S E+LL  +I    GPDFPTG  I+  + +I + YR GRG    
Sbjct: 210 REVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATIL-GKTAIEQVYRTGRGSIIQ 268

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310
           RA   +EE+ +   C+VVTE PYQV    L  KIA+L+    +  + DIRDE+++    R
Sbjct: 269 RAVVNIEEI-QNRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIADIRDETSDRSGQR 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D+++ FP NM  L  G VP+ + LDG +  W+ H+ E
Sbjct: 328 LVIVLK-RDAVAKVVLNNLYKRTDLQSSFPANMLALVDG-VPRTLSLDGFVHYWVKHQVE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V    L    E Q
Sbjct: 386 VIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVGLMDLLKIDEVQ 445

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E   L+ +   ++ ++ +  +Q   +  E+ E+ E F 
Sbjct: 446 ADAILAMQLRRLAALERQKILDEHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFG 505

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RRT        +     + +I +E + V I+  G+ +  +   VD      + 
Sbjct: 506 DE-----RRTAIVPF---NGEMTDEDLIPEEEVVVTITRDGYAKRTR---VDNYKAQHRG 554

Query: 548 GDSLKIA----------LHAHTTDRILLLSTD------GKAYTLPAG 578
           G  ++ A              TT   LL  T+       K Y +P G
Sbjct: 555 GKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNLGRVYRAKGYEIPEG 601


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/584 (36%), Positives = 336/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    +DN     E ++  ++E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +      + D ++      T D IL  +T G     KAY LP
Sbjct: 543 KGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  +++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 224/697 (32%), Positives = 392/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A + +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R +T  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSTLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ +T G     P   L   R    GE + Q + +   N++I+ A V   +D   
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
              V +  G    VE  E     T K K+  + K+  E +++  V  +  D V ++ +N 
Sbjct: 592 TYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 YALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFIC 688


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 318/529 (60%), Gaps = 20/529 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+AM + G     AF K 
Sbjct: 29  HIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRAFNKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 89  ARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETK 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 149 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+       + NP  + E+LL    E I GPDFPTG  I+ ++  I ++YR GRG   
Sbjct: 209 LREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTK-GIEDAYRTGRGSIT 267

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA   VEE+  G  C+VVTE+PYQ     L  KIA+LI   ++  + D+RDE++     
Sbjct: 268 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQ 326

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P +++ +++  + ++  F  NM  +  G VP+ + LD  ++ W+ H+ 
Sbjct: 327 RLVIVLK-RDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFIRHWVNHQM 384

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D+ +  ++    + E 
Sbjct: 385 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLDIDEA 444

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AILN++LR L  LE  +I+   D L     + ++++ S  +Q   I+ E+ E+   +
Sbjct: 445 QAQAILNMQLRRLAALERQKIQDRHDELQRLISEYNAIIASEDRQREIISEELGEIVNRY 504

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                   RRT        D +   + +I +E + V I+  G+I+  +S
Sbjct: 505 GDD-----RRTEILRGFNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 546


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 225/632 (35%), Positives = 359/632 (56%), Gaps = 39/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+AM + G      F K
Sbjct: 21  DKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFSK 80

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
             R++G+V+G+ HPHGD SVYD+LVRL QP+  RYPL  GQGNFG+   D AAA+RYTE 
Sbjct: 81  CTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTET 140

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ ++ED V+F+D Y+    EP V PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 141 KMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPPH 200

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E AL  + NPE + E+L+E +I    GPDFPTG  I+  +  I ++YR GRG  
Sbjct: 201 NLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQILGVK-GIQDAYRTGRGSV 259

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L+   ++  + DIRDE++    
Sbjct: 260 TMRAVVSVEEL-QGRTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRTG 318

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F  NM  +  G +P+ + +DG +  W  H+
Sbjct: 319 QRLVIVLK-RDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLSIDGFITAWATHQ 376

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR     +  +  +++   + E
Sbjct: 377 IEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDARTGLIALLEIDE 436

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E + +  E  +  +++ S ++Q + ++    E+ E+
Sbjct: 437 IQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAIIASEQRQRDIVS---EELTEL 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
            +K  D   RRT        D +   + +I +E + V ++  G+++  +S   D      
Sbjct: 494 LAKYGD--DRRTEIMLGFDGDMS--MEDLIPEEEMVVTVTRGGYVKRTRS---DNYRSQH 546

Query: 546 KEGDSLKIA----------LHAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQL 592
           + G  +K A          L   TT   LL  T+ G+ Y   A  L  G     G+ +  
Sbjct: 547 RGGKGVKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEGGRDAKGQHVAN 606

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
            + L   ++I        Y++   L++ +  G
Sbjct: 607 FLALQPGEEIAQILDIRDYETATYLVLATHNG 638


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 243/722 (33%), Positives = 375/722 (51%), Gaps = 63/722 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++A +E G   G  F+KSA+IVG+V+G 
Sbjct: 27  MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASNEGGFVAGRPFRKSAKIVGDVMGN 86

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR+ +VA  +L 
Sbjct: 87  YHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLARVANSLLD 146

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF D Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN+ E+ +   A
Sbjct: 147 DLDKDTVDFADNYDGSRREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCFA 206

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP I+ E+L E I GPDFPT  +I+  +     +Y  GRG    RAR  +EE     
Sbjct: 207 YMDNPAITNEELFEIIPGPDFPTAPLIL-GKTGARAAYTTGRGSILQRARHEIEERRGDR 265

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IV+T IP+QV KS L+EKIAE    KRI  + DIRDES+ + VR+V+  K R    ++
Sbjct: 266 KSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISDIRDESSRQGVRVVVDLK-RDASAEV 324

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  I+  +  ++ FP NM  +S GR P+V+ L   ++ ++  R EV+ RR+ + +    
Sbjct: 325 VLNQIWRYTPAQSSFPANMLAISGGR-PEVLTLREFIQAFITFREEVITRRTKYELNKAR 383

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------------- 418
            R  IL GL++A  N+DE++A+IR+   P                               
Sbjct: 384 DRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLLAKEWPIGDIAQYIALVEAIEPSD 443

Query: 419 ----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + L+E QV AIL+LRL  L  L   +I  EL  L    E+  S+L    + +  
Sbjct: 444 EQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELKLLSLSIEEYLSILADRVKLYGV 503

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---- 530
           +  E+ E++  ++             E++ A      + +IE+E + V +++ G+I    
Sbjct: 504 MRGELEEIRAAYATP--------RVSEIAPAWDGIDDEDLIEREEMVVTVTHGGYIKRTP 555

Query: 531 ----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               R+        S +  K+ D++       T + +L  +  G+ Y +    L  G  +
Sbjct: 556 LDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGRVYRMKVWKLPEGGPQ 615

Query: 585 GHGEAIQLLIDLNHNQDI--VTAFVYDST--CKLLVVSSKGNAFIVEES-----EIIANT 635
             G  +  L+ L  ++ +  V A   D     KL +V +     +   S      + +N 
Sbjct: 616 TKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMVRRNSMDAFTNVPSNG 675

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK 693
           +    F++ S +  + + +      + +  ++ K + FS     E  SR G GVR    K
Sbjct: 676 KYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLK 735

Query: 694 DG 695
           +G
Sbjct: 736 EG 737


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 336/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    +DN E   E  L    E + GPDFPT G+IV S + I ++Y  GRG  
Sbjct: 194 NLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGS-QGIHDAYTTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++AH+
Sbjct: 313 LRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYVAHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIVHDEL---SEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGD--ERRTRIIA---ADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 337/586 (57%), Gaps = 31/586 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     ++ K
Sbjct: 19  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 79  CARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTEC 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 139 RLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+    +  ++N E S E+LLE ++    GPDFPT G+IV  R+ I  +YR GRG  
Sbjct: 199 NLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLIV-GRDGIESAYRTGRGSI 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R+   VEE  +G   +VVTE+PYQV    LIE IA ++   ++  + +I DES++ + 
Sbjct: 258 RMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIG 317

Query: 311 I-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++F   R     +++ +++  + ++T F +NM  +  G VP+ + LD +++ ++ H+ 
Sbjct: 318 MRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDG-VPRTLRLDQVVRNYIRHQI 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 377 EVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVARQGLIDLLDVDDI 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  EL  +  E      +L   ++Q  QI  +  E+ EI 
Sbjct: 437 QAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDILARPERQ-RQIVRD--ELTEIV 493

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
            K  D  R R         D     + +I  E + V I+  G+         R+ K    
Sbjct: 494 DKHGDERRSRLVA-----DDGDVTNEDLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGK 548

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
            +     K+ D +       T D +L  +  G     KAY LP  N
Sbjct: 549 GVQGATLKQDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEAN 594


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 228/756 (30%), Positives = 409/756 (54%), Gaps = 52/756 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +++++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KSA
Sbjct: 4   IESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++L R++Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN+
Sbjct: 124 SKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  G G   VR++ 
Sbjct: 184 GEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGHGKIIVRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      IV+TEIPY+V K++L+++I E+ + K+I  + ++RD+S  +   ++   
Sbjct: 243 SIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D   ++  +F  +D++  +  NM  +S  R P+ + L  IL  +L  ++EV+ +R+
Sbjct: 303 KRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMR-PERLSLKKILVAYLEFQQEVIEKRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+ 
Sbjct: 362 KYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVKTYDFSEKQADAIVA 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  ++++E  +L  E  K + +LNS K+    +A E+R + + +  +    
Sbjct: 422 LQLYRLTNTDVTELENEHQHLADEITKDNKILNSPKELNRVLANELRALAKTYRSA---- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGDSL 551
           RR     EVS  D       +I  E + V++S+ G+I+  S++S+    +    K+ D  
Sbjct: 478 RRTEIQAEVS--DIKINTDVLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTGLKDEDYP 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                 +  D + + +  G     P   L  +  +  GE I   I L+ +++I+  + +D
Sbjct: 536 IFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYAFD 595

Query: 610 STCK---LLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMK-----------LVV 654
           S  +    L+ + +G+     +    A+ + G+T+     + EK+K           L  
Sbjct: 596 SLKQPGTFLIATDQGHV----KQTGFADMKPGRTYKSHAYTYEKLKTADERVVAIHYLKT 651

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
             T   + ++  N   L + ID++P   +R  GV+                   GL  +D
Sbjct: 652 PATAGQMLLISNNGLALRYGIDEVPVNGARTTGVK-----------------SMGLRGVD 694

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                   SE+D+L  + +RG    L  K  P + +
Sbjct: 695 KVTNLQLVSEDDVLAIVTQRGSFKKLAVKEIPATSR 730


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 246/767 (32%), Positives = 384/767 (50%), Gaps = 60/767 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +M E G      + KS
Sbjct: 16  DIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y +LVR+ QPF     LI GQGNFG++DGD  AA RYTE R
Sbjct: 76  ARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF D Y+ ++ EP V P++ PNLL NG  GIAVGMAT+IP HN
Sbjct: 136 MAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L LID PEI+ ++LL+ + GPDFPTGG I+  R    ++   GRG   +R  
Sbjct: 196 LGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEII-GRAGPRQALLTGRGSVIMRGV 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   I+VTEIPYQV K+ L+E IAEL+  K++  + DIRDES  D   ++  
Sbjct: 255 ASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADIRDESNRDGMRIVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F +NM  L+ GR P+ M L  +L+ ++  R EV+ RR
Sbjct: 315 LKRDASGEVILNQLYRFTALQSSFGVNMLALNRGR-PEQMGLHKLLQLFVEFREEVVVRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR------------ 420
           + F +     R  +L GL IA  NIDE I IIR+   P      +V++            
Sbjct: 374 TKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVE 433

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT+ Q  AIL L L  L  L   +I +E + L         LL+
Sbjct: 434 LIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAETLADAIRGYLELLS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   +  E+ EV+E F+    + RR    C++   D     + +I +E + + ++ 
Sbjct: 494 DRANIMAVVREELVEVREKFA----VPRR----CQIVDGDADMEDEDLIVREDMVITVTM 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G++        R+        S +  K  D++     A T   +L  ++ GK Y +   
Sbjct: 546 GGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630
            L  G     G+A   L+ +   + I +           S   ++  +  G+    + S+
Sbjct: 606 RLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRRNKLSD 665

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR--GKGV 687
            +   R GK  +K+   + +  V     D  V +     + + FS+D++   +     GV
Sbjct: 666 FVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGV 725

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           R     +G   +VI   +   +    +   +Y + +  +L   G+ G
Sbjct: 726 RGVRLAEG--DEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEG 770


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 356/604 (58%), Gaps = 25/604 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NMNIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD+AA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDNAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +A +A IDN +IS ++L+ YI GPD PTGGII+   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + I++ E PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRD 303

Query: 304 ESAED-VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  + +R V+ F K+ +++  + +++ +F  ++++     NM  ++ G+ P+ + L  I
Sbjct: 304 ESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGK-PETLGLKAI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---M 417
           LK ++ H++EV+ RRS   ++   +R  I++G + A   +DEI+  IR+    K     +
Sbjct: 363 LKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSKKDSEQNL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V++F  +  Q  AI+ L L  L  LE    + E  NL  + + ++ +L+S K+ +  +  
Sbjct: 423 VNKFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKKIKALEKILSSEKELFKVVKK 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536
           E+ EVKE +        RRT         K  +++ +++ E I + +SN G+I+ +    
Sbjct: 483 ELEEVKEKYGDP-----RRTEIVHDDEQAKIDIEELILD-EDIVITLSNEGYIKRVADKY 536

Query: 537 ----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590
               +  +  + ++EGD     L+ +T D +++ +  G  Y +   N+  +  +  GE +
Sbjct: 537 YRRINPKVEDIEYREGDFNTYVLNGNTKDNMMIFTNQGNLYQIRISNIPEMKWKEKGERL 596

Query: 591 QLLI 594
             LI
Sbjct: 597 DTLI 600


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 231/709 (32%), Positives = 387/709 (54%), Gaps = 44/709 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K +
Sbjct: 23  IEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCS 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPHGD ++YD+LVRLAQP+V R PLI GQGNFG+   DSAAA RYTE RM
Sbjct: 83  RVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECRM 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ ++ED VDF+  Y+    EPVV P++FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 143 APLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ E A   +++P+ + E+    L+E I GPDFP G +IV  R+ I ++YR GRG    
Sbjct: 203 REVAEGARWALEHPDATREELQDALIERIKGPDFPNGALIV-GRQGIEQAYRTGRGSITQ 261

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   V+E  +G   +V+TE+PY V    L  KIAEL  + ++  + D+RD++++    R
Sbjct: 262 RAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQR 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++   +++ ++   ++++T F  NM  L  G VP+ + +D  +  W+ H+ +
Sbjct: 322 LVVVLKRDAV-ARVVLNNLLKHTELQTNFSANMLALVDG-VPRTLAIDQFISNWVTHQID 379

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR      + +  +++   + E Q
Sbjct: 380 VIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAREGLIALLDIDEVQ 439

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  L+  +I  +L  + A    +  +L +  +Q   +A E+ E+ E + 
Sbjct: 440 ATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYG 499

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
                  RR+   ++  AD     + +I  E + V I+  G+ +  ++          K 
Sbjct: 500 DD-----RRS---QIIAADGDLSMEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKG 551

Query: 547 ------EGDSLKIALHAHTTDRILLLSTDG------KAYTLPAGNLLSGRGHGEAIQLLI 594
                  GD +     A T    LL  T        KAY LP  +  +  GH   +  L+
Sbjct: 552 VRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEASRDAKGGH---VAGLL 608

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
               +++I        YD    L++ +  G        +  +  + G   +   SE+   
Sbjct: 609 SFQPDENIAQVLAIRDYDQAPYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDEL 668

Query: 652 LVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDG 695
           +  ++    DH+ +V    + + F  D  Q+  M R   GV    ++DG
Sbjct: 669 IGAELVNPEDHILLVSRKGQSVRFQADDSQLRPMGRATGGVTGMKFRDG 717


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 365/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 600 YPYKELSPTKTFVFITKA 617


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 365/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 227/632 (35%), Positives = 354/632 (56%), Gaps = 48/632 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 4   IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE ++
Sbjct: 64  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +DE+ VDF D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP    
Sbjct: 124 MPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP--- 180

Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            ++   A   +++P+ S E+    L+E I GPDFP+G ++V  R+ I E+YR GRG   +
Sbjct: 181 -QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVV-GRKGIEEAYRTGRGSITM 238

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE++     R
Sbjct: 239 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 297

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 298 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 355

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 356 VIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 415

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q + ++ E+  + E F 
Sbjct: 416 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNEILRSESRQRSIVSEELAAIVEKFG 475

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539
                  RR+        D     + +I +E I V I++ G++        RS K     
Sbjct: 476 DD-----RRSKLVPF---DGDMSMEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKG 527

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAIQL 592
           +     K+ D L       TT   LL  T+       KAY LP     +GR   G+ +  
Sbjct: 528 VRGTKLKQ-DDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPD----AGRDARGQHVAN 582

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           L+    ++ I        Y++   L++ +  G
Sbjct: 583 LLAFQPDEKIAQILAIRDYEAAPYLILATKGG 614


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 242/714 (33%), Positives = 392/714 (54%), Gaps = 51/714 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K
Sbjct: 12  ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPYRK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+
Sbjct: 72  CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYTES 131

Query: 135 RMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP 
Sbjct: 132 RLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LALI +P+I   +L+  I GPDFPTGG I+  R+ I E+Y  GRG   +R
Sbjct: 192 HNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQIL-GRKGIRETYTGGRGSITMR 250

Query: 254 ARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
               +E +   GR     +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D 
Sbjct: 251 GVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++ L+ ++  F      L  G  P V+ L  +L+ +L  R 
Sbjct: 311 MRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGE-PVVLNLKRMLEVFLDFRI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           E + RR+ + ++  + R  IL+GLL+A  ++D II +IRN          +V+   L+E 
Sbjct: 370 ETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQGLVNDHGLSEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++  + I  E+R++KE  
Sbjct: 430 QADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERH 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--L 543
           +       RRT   ++    +  L+   +I  E   V+++  G+++ +     + ++   
Sbjct: 490 NTP-----RRTEILDL----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFESTSRGT 540

Query: 544 HFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLID 595
             K G      +++++ +  +  D +LL S  G  Y+LPA    + S    G  +  L+ 
Sbjct: 541 RGKAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLP 600

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVS 645
           +   + I +      ++   +L+++++ G       +AF    S I AN   G   + + 
Sbjct: 601 IPREEQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAF----SNIRAN---GLIAINLE 653

Query: 646 SEEKMKLV-VKVTGDHVAVVGENRKLLIFSI---DQIPEMSRGKGVRLQSYKDG 695
             + ++ V +   GD V +   N   + F I   D  P     +GVR  + +DG
Sbjct: 654 DADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDG 707


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F+KSA+ VG+VIG+LH
Sbjct: 16  DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E IL+ +
Sbjct: 76  PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+  A L  I
Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   VRA+  +E +  G   
Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V     + ++   ++ 
Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM  ++ GR P++M +  I+  +L H+ EV+ RR+SF ++  + R+
Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +AI+ L+L  L   + 
Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E D L  +   +  +L +     + I  E+ E+K+ F +       R +  E   
Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
           ++    ++ ++  E + + ++  G+I+     S + S    +  KE D +   +  +T D
Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
             ++ +  G+   +P   L  +  +  G+ +  ++ +  ++ +V  +
Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F+KSA+ VG+VIG+LH
Sbjct: 16  DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E IL+ +
Sbjct: 76  PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+  A L  I
Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   VRA+  +E +  G   
Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V     + ++   ++ 
Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM  ++ GR P++M +  I+  +L H+ EV+ RR+SF ++  + R+
Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +AI+ L+L  L   + 
Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E D L  +   +  +L +     + I  E+ E+K+ F +       R +  E   
Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
           ++    ++ ++  E + + ++  G+I+     S + S    +  KE D +   +  +T D
Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
             ++ +  G+   +P   L  +  +  G+ +  ++ +  ++ +V  +
Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 220/642 (34%), Positives = 357/642 (55%), Gaps = 45/642 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++  +V   V+ V L   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM + G  
Sbjct: 14  DAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMYDGGYR 73

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + K +R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPLI GQGNFG+   D AA
Sbjct: 74  PDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGSAGNDGAA 133

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE +M  ++  +++ ++ED VDF+D Y+  + EPV  P++FPNLL NG++GIAVGM
Sbjct: 134 APRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGSAGIAVGM 193

Query: 188 ATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+   A  L+ +P+ +    +E LL  I GPDFP G  I+  R+ I ++Y
Sbjct: 194 ATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATIL-GRKGIEDAY 252

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG    RA   VEE+ +G  C+VVTE+PY V    L  KIA  +   ++  + D+RD
Sbjct: 253 RTGRGSITQRAVVEVEEI-QGRTCLVVTELPYMVNPDTLANKIASYVKDGKVAGIADLRD 311

Query: 304 ESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES+     R+V+  K R     +++ +++  + ++  F  NM  L +  VP+ + +D  L
Sbjct: 312 ESSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFSANMLAL-VDNVPRTLSIDAFL 369

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + W+ H+ +V+ RR+ FR++  + R  IL+G L A   +DE+IA+IR   + D+ +  ++
Sbjct: 370 RLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDEARTGLM 429

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q +AIL+L+LR L  LE  +I+        E +KI+ L+    + +N+I   
Sbjct: 430 ELLDVDEIQANAILDLQLRRLAALERLKIEE-------EAQKIEELI----KDYNEILAT 478

Query: 479 IREVKEIFSKSTDL------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
               +EI S+  D         RRT    ++  D     + +I +E + V I+  G+ + 
Sbjct: 479 PARQREIVSEELDAVVQRYGDDRRTKI--LAGFDGDVSMEDLIPEEEVVVTITRGGYAKR 536

Query: 533 LKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            +S            ++    +  D ++      T + +L  +  G+ Y   A  L  G 
Sbjct: 537 TQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGM 596

Query: 585 --GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
               G+ +  L+ L  +++I        YD+   L++ +  G
Sbjct: 597 RDAKGQHVANLLALQPDEEIAEVLSIPDYDAAQYLMLATKSG 638


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D+V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDYVVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 397/710 (55%), Gaps = 59/710 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G+   ++ +KS+
Sbjct: 19  VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARM
Sbjct: 79  SIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +AE +L  +D+D VDF+  Y++   EP V PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LI+NP+ ++  L+E+I GPDFPTG  IV  R ++ ++Y+ GRG  RVRA +
Sbjct: 199 GEVVDATVELIENPDATVADLMEHIKGPDFPTGANIV-GRNAVHKAYKTGRGRVRVRADY 257

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
            V EE GR    IV+ E+PYQ  K+RLIE+IA+ +   +I  + DIRDES  D +R+V+ 
Sbjct: 258 DVFEEEGR----IVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESDRDGIRVVIE 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K   +    ++++  + + +E+ F + +N+  +   PQV+ L   L+ +L HRR+V+ R
Sbjct: 314 LKRGVMAE--VVKNQLLDNHLESTFGV-INLALVDGQPQVLTLKETLEHYLDHRRDVVRR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VS 419
           RS + +   + R  IL G L A  NID+++  IRN    D  K  +            + 
Sbjct: 371 RSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVGGEPLP 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F  +E Q + I++++L SL  +E  +I++E +++ A  E+++++L    +    I  E+
Sbjct: 431 TFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQSELDAVIESEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFC----EVSRAD--------KATLQQAMIEKEPITVVISNR 527
            ++K+ ++       RRT+F     EV+RAD            +   I++ P++      
Sbjct: 491 LDIKDEYADD-----RRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS------ 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRG 585
              R        +     KEGD++      +T D +L  +  G+ Y L A  +  +S   
Sbjct: 540 -RFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTA 598

Query: 586 HGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            G++   L+D +  ++I TA V      D    L +V+  G                G  
Sbjct: 599 RGKSAVNLLDFDDGEEI-TAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGII 657

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688
             K+   +++  V    G+   V+G  R + I F  D++  M R  +GVR
Sbjct: 658 ATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAMGRSARGVR 707


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 257/726 (35%), Positives = 405/726 (55%), Gaps = 57/726 (7%)

Query: 7   SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           S  ++L E N + +   LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   SGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D
Sbjct: 67  GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+     ++I NP +  ++L E I GPDFPTGG I+  R+ I E++
Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQIL-GRDGIKETF 245

Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           + GRG   +R    +E++   GR     +++TE+P+Q  K+ LIE+IA+L+  K++  + 
Sbjct: 246 KSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEGIS 305

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRDES  D +RIV+  K R   P +++ ++F L+ ++  F  N+  L  G  P  + L 
Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVNGE-PTTLSLR 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +L  +L  R   + RR++F ++  + R  I+KGLL+A   +D II +IR+    K    
Sbjct: 364 KMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRS---AKDTTS 420

Query: 419 SRFSLTEN------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           +R  L ++      Q DAIL ++LR L  LE  +IKSE D L  +     ++L   K + 
Sbjct: 421 AREQLQKDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTRKITDYKNILQD-KDRI 479

Query: 473 NQIAC-EIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWI 530
           N+I   E+ ++ E FS       R+T    +    D   L    I  E   V++++ G++
Sbjct: 480 NEIILEELSKIDERFSSP-----RKTEILNLGGGLDDIDL----IANERSVVLLTSAGYL 530

Query: 531 R--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-L 581
           +        S    S   +    +E D + + +  +  D +LL S  G AY LPA  + +
Sbjct: 531 KRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590

Query: 582 SGRGH--GEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
           S R      ++QLL      Q   IV+   +D+   LL+++  G    ++ + + A ++ 
Sbjct: 591 SSRTAKGTPSVQLLPIPREEQITSIVSVESFDNDRYLLMLTKAG---FIKRTPLSAFSKI 647

Query: 637 KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLI-FSIDQI---PEMSRGKGVRL 689
           +    + ++ EE   L  V+++  GD V ++G ++ + I F +D     P     +GV+ 
Sbjct: 648 RSNGLIAINLEEGDALTWVRLSKEGDSV-LIGSSKGMTIHFRLDNNELRPLGRTARGVKS 706

Query: 690 QSYKDG 695
            + KDG
Sbjct: 707 MNLKDG 712


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 338/603 (56%), Gaps = 65/603 (10%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS  G D G  +KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  A+ RYTEAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I 
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            ++  GRG   V+ +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +
Sbjct: 180 SAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITE 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES +    V+    R+ +   ++  I  L+ + + F +N  VL+  R P +M L  I
Sbjct: 240 IRDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---- 416
           ++ ++  R+EVL RR+ FR++    +  I  GL IA L+IDE+I IIR    P       
Sbjct: 299 IEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASREL 358

Query: 417 ----------------MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                           ++S          + LTE Q+ AIL+++L+ L  LE+ ++++EL
Sbjct: 359 LNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAEL 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++   ++  + L SG++   +I   ++E+K  F+       R+T+  E   +D     
Sbjct: 419 SSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEA 470

Query: 512 QAMIEKEPITVVISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + ++  G+I+ +K SH                KE D +      +T   +
Sbjct: 471 EDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSV 530

Query: 564 LLLSTDGKAYTLPAGNL----LSGRG----------HGEAIQLLIDL----NHNQDIVTA 605
           L  S  G+ Y L    L     + RG           GE I  ++ L    + NQ+IV  
Sbjct: 531 LFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFT 590

Query: 606 FVY 608
             Y
Sbjct: 591 TAY 593


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++++
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEVI 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 201/497 (40%), Positives = 302/497 (60%), Gaps = 14/497 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI++ M +MGL       
Sbjct: 14  DENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQMDQMGLRPDRGHV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG++D D  AA RYTE
Sbjct: 74  KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM   A  ++ G+ ED VDF   Y+ + ++P V P+ FP LL NG SGIAVGMAT+I  
Sbjct: 133 ARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGASGIAVGMATNIAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E    A+ L+D+P+ ++  L+ ++ GPD P GG+IV   E + E+Y  GRG F+ R
Sbjct: 193 HNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIV-GLEGVKEAYETGRGAFKTR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A+  VE V      ++VT++PY V   ++IEKI E + A R+  +  +++  +    +R+
Sbjct: 252 AKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISSVQNLTDRIHGLRL 311

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN   +P+ +++ ++  + +E  F +N   L  G+ PQVM L  IL+ ++ HR +V
Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PQVMGLKQILRVFVDHRLDV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RRS FR+   + R+ +++GLLIA L+ID++IAIIR+ D     +  +++ F L++ Q 
Sbjct: 370 TTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARERLMTAFDLSQAQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL LRLR L K    ++++E D L A   ++  +L S +     +  E+ EV E    
Sbjct: 430 DYILELRLRRLTKFSRIELEAERDELAARIAELREVLESPELLRALVKRELAEVSERLGT 489

Query: 489 STDLGRRRTTFCEVSRA 505
                 RRT     S A
Sbjct: 490 P-----RRTVLLASSGA 501


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 422/779 (54%), Gaps = 49/779 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + ++ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ + +EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+     ++EK +E++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G  +  IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGNRT-VIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R   P +++ ++F  S +++ F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVPRVVLNNLFKHSQLQSNFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     ++ +  
Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S   + + Q DAIL ++LR L  LE  +I +EL+ L      +  +L S ++Q   + 
Sbjct: 417 LMSLLDVDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDILASPERQRAIVR 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+ E+ E +        RR+   ++  A     ++ +I +E + V I++ G+       
Sbjct: 477 DELAEIVEKYGDE-----RRS---QIIAATGDVSEEDLIARENVVVTITSTGYAKRTKVD 528

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
             +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    
Sbjct: 529 AYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L++    + I        Y+    L++ +++G       ++  +    G   + 
Sbjct: 589 GQHVANLLEFQPEERIAQVIQIQTYEDAPYLVLATAQGRVKKSRLTDYESARSAGLIAIN 648

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDGGISD 699
           ++  +++     V  GD + +  E  + + F+ D  Q+  M R   GV+   +++G    
Sbjct: 649 LNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRFREG--DQ 706

Query: 700 VICFKIC-EGLTWIDSAGRSYNR----SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           ++   +  +G   + +    Y +    SE    G    RGG+G +  K  P+ G+ + +
Sbjct: 707 LLAMSVVRDGEFLLVATSGGYGKRTPISEYSTQG----RGGLGVVTFKYTPKRGRLIGA 761


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 224/695 (32%), Positives = 390/695 (56%), Gaps = 25/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ +  L
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDERTLYNLMKKELREVKKKFA-TPRL 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
                T  +V   D  +L    I +E   V ++  G+I+     S   S L     +E D
Sbjct: 480 SSLEDT-AKVIEIDTVSL----IAEEETYVSVTKAGYIKRTSPRSFAASTLEEIGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+ A 
Sbjct: 535 RLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+  + K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
            V ++ +N   L F+I+++P + ++  GV+  + K
Sbjct: 655 DVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLK 689


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 255/775 (32%), Positives = 417/775 (53%), Gaps = 70/775 (9%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F+K AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYTE R+       L   D D
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFL---DID 117

Query: 151 A------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           A      VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+IP HN+ E+ +   
Sbjct: 118 AIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLS 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVG 262
            +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG   +R +  +E  +V 
Sbjct: 178 VMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGRVVMRGKTDIETIDVK 236

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
                I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES      V+    R  DP
Sbjct: 237 SKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADP 296

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM-Q 381
            +++ +++  + +++ F  NM  +  G+ P++M L  IL+ ++  R  V+ RR+ F++ Q
Sbjct: 297 AIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFIDFRCSVIERRARFKLSQ 355

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           A++R+  I++G++I   N+D +I IIR   N    +  ++  F L++ Q +A+L++ LR 
Sbjct: 356 ALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLSDKQAEALLDITLRK 414

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN-----------QIACEIREVKEIFS 487
           L  LE  +   E  +L  E  K++ LL++ K  +            +I   IRE+K ++S
Sbjct: 415 LTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDGLDYLRAEINVVIRELKLMWS 474

Query: 488 -------KSTDLGRR----RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
                  ++TDL  +    R +F E S A        +I  E + +++S +G+++ +K +
Sbjct: 475 LFKLILQEATDLKNKFATPRRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPN 533

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---------- 586
           + +L           K+ ++ +T+D I+  + D   Y    G + S R +          
Sbjct: 534 TFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAAT 593

Query: 587 GEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGK 639
           G  +  L+ L+  + I     V  F  D    +L V    N +I  V  +   A    G 
Sbjct: 594 GTPLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGI 649

Query: 640 TFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             ++++  +++K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G  
Sbjct: 650 ISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG-- 707

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750
             +    I    +   +   +Y+R  +    WL      G+G  VP    R G F
Sbjct: 708 DKMASMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 760


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 178/400 (44%), Positives = 276/400 (69%), Gaps = 12/400 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W 
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315
            E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ P
Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + RR
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP
Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+  S++S++      +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYD--STCKLLVVSSKG 621
           + Y   S  K  V  +K 
Sbjct: 597 YPYKELSPTKTFVFITKA 614


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 234/724 (32%), Positives = 398/724 (54%), Gaps = 35/724 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KSA
Sbjct: 6   IETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RYTEAR+
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+
Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LI +P+ S+EKL+E+I GPDFPTGG IV+  + I ++Y+ GRG   VRA+ 
Sbjct: 186 GEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGG-IVQGADGIKKAYQTGRGRIVVRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +    
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+ + + ++  +   +D++  +  NM  +   R P  + L  IL  +LA ++EV+ RR+
Sbjct: 305 KRNANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKHILTSYLAFQKEVVRRRT 363

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
           S+ +    RR+ I++GL+ A   +D++I  IR   N    K  ++ +++ T+ Q +AI+ 
Sbjct: 364 SYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFTDVQAEAIVT 423

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  +++ E  +L    ++   +L+  ++    +  E++ VK+ F       
Sbjct: 424 LQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDEELSKVVRREMQAVKKEFGNP---- 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFKEG 548
           RR     +V + +  T  +  +  E + V++S+ G+     IRS K+ S+D   L  +E 
Sbjct: 480 RRTQIENQVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGL--RED 535

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D   +    +T   + + +  G     P   L   R    GE I   I L  +++I+ A 
Sbjct: 536 DYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEIIKAM 595

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           V+D        +  +S G        +    +R  K+   ++ + K K    V+ D+   
Sbjct: 596 VFDKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRY-KSHASMAVKLKSKDATVVSVDYYEP 654

Query: 664 VGENRKLLI---------FSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWI 712
             ENR LL          F +  +P    R  GVR  + K D  + D++  K  + +  I
Sbjct: 655 TDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDALVDLVLVKDGQRVASI 714

Query: 713 DSAG 716
              G
Sbjct: 715 TQRG 718


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 226/706 (32%), Positives = 394/706 (55%), Gaps = 27/706 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ +  L
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA-TPRL 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
                T   V   D A+L    I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 480 SALEDT-ANVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L   R    GE + Q +     N++I+ A 
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITSFETNEEILYAE 594

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
           V D           +  G    VE  E     T K K+  + K+  E +++  V  +  D
Sbjct: 595 VVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
            V ++ +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSSFIC 700


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 248/767 (32%), Positives = 411/767 (53%), Gaps = 43/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G     ++ K
Sbjct: 12  DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRSYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYP++ GQGNFG+   D  AA RYTE 
Sbjct: 72  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSRGNDGPAAMRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L+DNPE     ++E  ++Y+ GPDFPT G IV S + I ++Y  GRG  
Sbjct: 192 NLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGS-QGINDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++  +  I DES++ V 
Sbjct: 251 RMRGVTSIEEEG-NRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+
Sbjct: 310 MRIVVTLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRHYVTHQ 367

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E
Sbjct: 368 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLMELLTVDE 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   +  E+ E+ + 
Sbjct: 428 IQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILARPERQRAIVRDELAEIVDK 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           +        RRT   ++  A     ++ +I +E + V I++ G+ +  K  +        
Sbjct: 488 YGDD-----RRT---QIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGG 539

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D ++    + T D IL  +  G+ Y L A  L   S    G+ +  L++
Sbjct: 540 KGVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 599

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-K 651
               + I        Y+    L++ +++G       S+  +N   G   + ++  +K+  
Sbjct: 600 FQPEERIAQVIQIQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLNEGDKLIG 659

Query: 652 LVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-- 706
             +    D + +V E  + + F+   DQ+  M R   GV+   +K  G   ++   +   
Sbjct: 660 AALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMRFK--GDDQLLAMTVVKP 717

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + ++G    R+  D     G RGG G L  K  P+ GK +++
Sbjct: 718 DAFLLVATSGGYGKRTSLDEYSPQG-RGGQGVLTFKYTPKRGKLIAA 763


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 350/620 (56%), Gaps = 43/620 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V + V+ + L+  + + YL+YALS I ERA+PD+RDG KPVHRR+++AM + G      
Sbjct: 45  MVGQRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 104

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RY
Sbjct: 105 YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRY 164

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIAVGMAT+I
Sbjct: 165 TECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNI 224

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ +     +D+PE S E+LL+ +I    GPDFPTG  I+   + I ++YR GR
Sbjct: 225 PPHNMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATIL-GHKGIEQAYRTGR 283

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA    EE+ +G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++ 
Sbjct: 284 GLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSG 342

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+VL  K  ++ P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+
Sbjct: 343 RTGQRLVLVLKRDAV-PKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 400

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT- 424
           +H+ +V+ RR+++  +  + R  IL+G L A   IDE+I +IR+    + V ++R  L  
Sbjct: 401 SHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSS---QTVEIARTGLMD 457

Query: 425 -----ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
                + Q DAIL ++LR L  LE  +I  E D L+        +L   ++Q   +  E+
Sbjct: 458 LLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYADILAKPERQRKIVGDEL 517

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+   +        RRT     S        + +I +E + V +++ G+I+  K+    
Sbjct: 518 DEIVARYGDD-----RRTKILPFSGEMNV---EDLIAEENVVVTVTHAGFIKRTKADEYR 569

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                   +     ++ D +       T + +L  +  G     KAY LP G+  S    
Sbjct: 570 AQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGSRDS---K 626

Query: 587 GEAIQLLIDLNHNQDIVTAF 606
           G+ +  L+    ++ I T  
Sbjct: 627 GQHVANLLQFTPDESIQTVL 646


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 212/611 (34%), Positives = 343/611 (56%), Gaps = 26/611 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG  I    + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEIES-DESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RIV+  K R  + ++++  +F ++ +++ F +N   L  GR P+++ L   +K +
Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLKECVKYF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421
           + HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P      +  RF
Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ E
Sbjct: 417 NLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533
           VK+ +        RRT   E+  + +    +     +P+ + +S+ G+I+          
Sbjct: 477 VKDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQ 528

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
               V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ
Sbjct: 529 ARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQ 588

Query: 592 LLIDLNHNQDI 602
            ++++  +  I
Sbjct: 589 NMLNIESDDAI 599


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+  PK  +   +  TE Q +AI+
Sbjct: 361 SPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 355/634 (55%), Gaps = 47/634 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V +   ++  YL YA+S I  RA+PD+RDG KPVHR+I++ M + G      + K +
Sbjct: 19  IEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYGMYDGGYRPDRGYVKCS 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+G+ HPHGD ++YDSLVR+AQP+  RYPLI GQGNFG+   D AAA RYTE+R+
Sbjct: 79  RVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTESRL 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +L+ +DED+VDF   Y+ + +EP V P++ PNLL NG+ GIAVGMAT IP HN+
Sbjct: 139 DPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVNGSEGIAVGMATKIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+  A    +DN E   E+ LE +I    GPDFPT  +IV  R  I ++YR GRG  R+
Sbjct: 199 REVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIV-GRAGIEDAYRTGRGSIRM 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVR 310
           RA   VEE  +G  C+VVTE+PYQV    L E+IAEL+   ++  + DIR+ES+    +R
Sbjct: 258 RAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKLNGIADIREESSGRTGMR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++AH+ E
Sbjct: 318 LVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFVRHYVAHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GL  A   +D +IA+IR+    ++ K  +++   + E Q
Sbjct: 376 VIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEESKTGLMNLLEVDEIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  + A+   ++ +L   ++Q   I  E+     I +
Sbjct: 436 ATAILDMQLRRLAALERQKILDELAEIEAKIADLEDILAKPERQRQIIKDEL---GAIVA 492

Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           K  D   RRT       EV+  D       +I +E + V I+  G+         RS + 
Sbjct: 493 KWGD--ERRTKIVPFEGEVNMED-------LIAREDVVVTITRGGYAKRTKVDLYRSQRR 543

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
               +S    K+ D +       T D +L  +  G     KAY LP     S    G+ +
Sbjct: 544 GGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEA---SRTARGQHV 600

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
             L+    ++ I        YD    L++ + +G
Sbjct: 601 ANLLAFQPDEQIAQVMQISGYDVAPYLVLATRRG 634


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 222/620 (35%), Positives = 342/620 (55%), Gaps = 67/620 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ +M E+  D+   ++KSAR V
Sbjct: 40  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNRPYRKSARAV 99

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD++VR+AQ F  R+ LI GQGNFG++DGD+AAA RYTE R+ ++
Sbjct: 100 GDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMRYTEIRLAKI 159

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+
Sbjct: 160 AHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 219

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+ +P+ SI++L+E I  PDFPT GII      + + YR GRG   +RA+   E
Sbjct: 220 VDACLHLLHHPDASIDELMEIIPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 278

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           ++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +    ++    R
Sbjct: 279 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSGMRLVIELKR 338

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRREV+ RR+ F
Sbjct: 339 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLVSVFLQHRREVVTRRTVF 397

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419
            ++    R  +L+GL +A  NID+ IAIIRN   P PV  +                   
Sbjct: 398 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAGLMAQSWDSQLVREMLTRT 456

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                      R+ L++ Q   IL +RL+ L  LE+ +I +E  
Sbjct: 457 RADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYK 516

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           + +   + +  +L   ++    I  E+  +++ F +     RR  +  E S  D  T  +
Sbjct: 517 DAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARR--SIIEHSAQDLCT--E 572

Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +S+ G+I        R+ K       A   KE D +     A+T D IL
Sbjct: 573 DLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYIL 632

Query: 565 LLSTDGKAYTL-----PAGN 579
             S  G+ Y L     PAG+
Sbjct: 633 CFSNRGRLYWLKVWEVPAGS 652


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 351/628 (55%), Gaps = 65/628 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +G+      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +   +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+E Q DAIL + LR+L  L++ +I     NL+ + 
Sbjct: 437 GLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L+  ++    I  E+ E+K      T+ G  R +       D A   + +I + 
Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548

Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +++ G+I++  +              A   K+ D ++    A+T D ++  +  G
Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608

Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592
           K      Y LP G   S GR     IQL
Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 228/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%)

Query: 7   SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G
Sbjct: 30  ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 89

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D 
Sbjct: 90  YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 149

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAV
Sbjct: 150 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 209

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E     +D+PE S E+LL  +I    GPDFPTG  I+   + I +
Sbjct: 210 GMATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATIL-GHKGIEQ 268

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+
Sbjct: 269 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 327

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDE++     R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 328 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 385

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDEII +IR+    +  +P 
Sbjct: 386 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPK 445

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 446 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 505

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+    EI +K  D   RRT     S        + +I +E + V +++ G+I+  K++
Sbjct: 506 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 557

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
                      +     +E D +       T + +L  +  G     KAY LP G+  S 
Sbjct: 558 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 616

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
              G+ +  L+    ++ I T     +    K LV++++
Sbjct: 617 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 653


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 220/624 (35%), Positives = 376/624 (60%), Gaps = 26/624 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + NV    L   L + YL+Y++S I  RAIPD+RDG KPV RRII++M E+GL     FK
Sbjct: 18  QNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD S+Y++LVR+AQP++ RY L+ GQGNFG+ID D  AA RYTE
Sbjct: 78  KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYTE 137

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +++ +D+  V   D ++    EP V P+K PNLL NG SGIAVGMAT+IP+
Sbjct: 138 ARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIPT 197

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ ++ +A +A I N +IS+E+L++ I GPDFPT G I+  +  I E Y  G+GGF +R
Sbjct: 198 HNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPT-GGIIIGKSGIREMYITGKGGFTIR 256

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +  ++   +    I++TEIPY + K+ LI++IA+ +  + IP ++D+RDES +D +R+V
Sbjct: 257 GKAEIKH-EKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314

Query: 313 L-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           + FP++  +  ++++ +++  ++++TRF  N  V+   + P++M L  +++ ++ HR EV
Sbjct: 315 IEFPED--VKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEV 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQV 428
           + +R+ +  Q   +R  I++GL+ A   ID +++IIR ++D  + +  +V    ++E Q 
Sbjct: 373 VRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            A+L++RL  L  LE   ++ E  +LL   EK   LL +  + +  I  E+ E+K+ +  
Sbjct: 433 KAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGD 492

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
                 R+T   ++        ++ +I  + I + ++ +G++        R+ + +   +
Sbjct: 493 P-----RKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGV 547

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNH 598
              +  E D +   +++    + L  ++ GK Y +   ++  S RG  G+ I   I L +
Sbjct: 548 IGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLEN 607

Query: 599 NQDIVTAF-VYDSTCKLLVVSSKG 621
            + ++    + D   +L  V+ KG
Sbjct: 608 GERVLAMVDITDYVGELFFVTKKG 631


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 251/738 (34%), Positives = 384/738 (52%), Gaps = 73/738 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   ++  +L YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   + KSAR+V
Sbjct: 20  ISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVWNRPYLKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE R+ ++
Sbjct: 80  GDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAAMRYTEIRLRKI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  +++D VDF   Y+   SEP V P+K PNLL NG++GIAV MAT+IP HN+ E+
Sbjct: 140 ASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMATNIPPHNLHEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L++NP+ +I++L+E I  PDFPTG +I      + E YR GRG   +RA+   E
Sbjct: 200 VAACLLLLENPDATIDELIEKIPAPDFPTGALIY-GVAGVREGYRTGRGRVVMRAKTHFE 258

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           ++ +      I+V EIPYQV K+ L +KIAEL+  K+I  + DIRDES +    V+    
Sbjct: 259 DMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDKQGMRVVIELK 318

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + ++++ ++F L+ ++  F +NM  L  G+ P+++ L  +L+ +LAHRREV+ RR+ 
Sbjct: 319 RGENAEVVLNNLFKLTQLQDSFGINMVALVDGQ-PRLLNLKQVLEAFLAHRREVVTRRTV 377

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420
           + +     R  +L+GL +A +N+DE+I +I++   P PV                 MV R
Sbjct: 378 YELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTP-PVAKERLLARTWAAGIAAEMVER 436

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q   IL +RL+ L  LE+ +I +E   ++ 
Sbjct: 437 AAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIVTEYREVVD 496

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               +  +L    +    I  E+  V E F       RR       S  D   L    I 
Sbjct: 497 RILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDL----IT 552

Query: 517 KEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            + + V +SN G+I        RS +       A   K+ D +     A+T D IL  S 
Sbjct: 553 PQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTILCFSD 612

Query: 569 DGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSK 620
            G+ Y L     P G+  S    G  I  +  L  N+ I        +D    + + +S 
Sbjct: 613 RGRVYWLKVWEVPQGSRAS---RGRPIVNMFPLAENEKITVVLPIKTFDDEHYVFMATSL 669

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678
           G       S+  +N RK         E    +   VT G+H V +  +  K + FS   +
Sbjct: 670 GTVKKTALSD-FSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSEGDV 728

Query: 679 PEMSR-GKGVRLQSYKDG 695
             M R  +GVR  + ++G
Sbjct: 729 RAMGRTARGVRGMALEEG 746


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 247/777 (31%), Positives = 408/777 (52%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D    + T   + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPV RRI++A  
Sbjct: 2   TDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYASY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     ++ KSA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+  
Sbjct: 62  DAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTEAR+T +A  +L+G+D++ VDF   Y+ +  EP V P++ PNLL NG+ G
Sbjct: 122 NDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++EI EA    ++N     E ++E  +E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    VEE  +G+  +V+TE+PYQV    L+  IAE +   +I  +
Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300

Query: 299 EDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             I D+S++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + 
Sbjct: 301 SKIEDQSSDRVGMRIVVRLK-RDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLR 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413
           LD +++ ++AH+ +V+ RR+ F ++  + R  IL+GL+ A   +DE+IA+IR     +  
Sbjct: 359 LDQMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIA 418

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q +AIL+++LR L  LE  +I  EL  +  E   +  +L+  ++Q  
Sbjct: 419 RTGLMELLDVDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDILDKPERQRA 478

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---- 529
            +  E+ E+ E F        RRT   ++  AD     + +I +E + V I+  G+    
Sbjct: 479 IVRDELGEIVEKFGDD-----RRT---KIIAADGDVTDEDLIAREDVVVTITETGYAKRT 530

Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSG 583
                RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S 
Sbjct: 531 KTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQSR 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        YD    L++ +  G        +  +N   G  
Sbjct: 591 TARGQHVANLLAFQPEERIAQVIQIKGYDDAPYLVLATKNGLVKKSRLEDFDSNRSGGIV 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVR-LQSYKDGGIS 698
            + +  E+++     V+  D + +V +N + + FS         G+    +Q  +  G  
Sbjct: 651 AINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPMGRATSGVQGMRFNGDD 710

Query: 699 DVICFKICEGLTW--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            ++   + +  T+  + ++G    R+  D     G RGG G L  +  P+ G  + +
Sbjct: 711 QLLALNVVQEDTYLLVATSGGYAKRTAMDDYPVQG-RGGKGVLTIQFDPKRGDLVGA 766


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 259/785 (32%), Positives = 421/785 (53%), Gaps = 61/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDQNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNPE S E+ L    E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    +I  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-NRQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN---SGKQQWN 473
           + +  ++ + Q DAIL ++LR L  LE  +I  E    LAE E+I + L    + +++  
Sbjct: 417 LKTLLAVDDVQADAILAMQLRRLAALERQKIIDE----LAEIEEIIADLKDILAREERQR 472

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           QI  +  E+ EI  K  D   RRT   ++  A      + +I +E + V I++ G+ +  
Sbjct: 473 QIVHD--ELAEIVEKYGD--ERRT---QIVAASGDVTDEDLIARENVVVTITSTGYAKRT 525

Query: 534 KSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584
           K  +          +     K+ D +K      T D IL  +  G+ Y L A  L  +GR
Sbjct: 526 KVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGR 585

Query: 585 -GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGK 639
              G+ +  L++    + I        Y+    L++ + +G    V++S +    + +  
Sbjct: 586 TARGQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGR---VKKSRLTDYESARSA 642

Query: 640 TFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQ 690
             + ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +
Sbjct: 643 GLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR 702

Query: 691 SYKDGGISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                G   ++   +    G   + ++G    R+  +     G RGG+G +  K  P+ G
Sbjct: 703 -----GDDQLLSMSVVHDGGYLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRG 756

Query: 749 KFLSS 753
           K + +
Sbjct: 757 KLIGA 761


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 316/529 (59%), Gaps = 20/529 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+ M + G     AF K 
Sbjct: 31  NIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDRAFNKC 90

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 91  ARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPRYTETK 150

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 151 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 210

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+       + NP  + E+LL    E I GPDFPTG  I+ ++  I ++YR GRG   
Sbjct: 211 LREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTK-GIEDAYRTGRGSIT 269

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +RA   VEE+  G  C+VVTE+PYQ     L  KIA+LI   ++  + D+RDE++     
Sbjct: 270 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQ 328

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R   P +++ +++  + ++  F  NM  +  G VP+ + LD  ++ W+ H+ 
Sbjct: 329 RLVIVLK-RDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFIRHWVNHQM 386

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D+ +  ++    + E 
Sbjct: 387 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLDIDEA 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AILN++LR L  LE  +I+   D L     + ++++ S  +Q   I+ E+ E+   +
Sbjct: 447 QAQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAIIASEDRQREIISEELGEIVNRY 506

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                   RRT        D +   + +I +E + V I+  G+I+  +S
Sbjct: 507 GDD-----RRTEILRGFNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 548


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 216/696 (31%), Positives = 391/696 (56%), Gaps = 24/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             RR+   + ++  +      ++E+E   V ++  G+I+     S + S L     ++ D
Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L   +    GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEK-MKLVVKVTGDH 660
           + D          + +G     E  E+    T + K+  + K+  ++  +  V  V  + 
Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDCIVAVAPVVLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + ++ +N   L F+I+++P + ++  GV+  + KDG
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F+KSA+ VG+VIG+LH
Sbjct: 16  DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E IL+ +
Sbjct: 76  PHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+  A L  I
Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   VRA+  +E +  G   
Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V     + ++   ++ 
Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM  ++ GR P++M +  I+  +L H+ EV+ RR+SF ++  + R+
Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +AI+ L+L  L   + 
Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E D L  +   +  +L +     + I  E+ E+K+ F +       R +  E   
Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
           ++    ++ ++  E + + ++  G+I+     S + S    +  KE D +   +  +T D
Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
             ++ +  G+   +P   L  +  +  G+ +  ++ +  ++ +V  +
Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/526 (37%), Positives = 314/526 (59%), Gaps = 14/526 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPH D ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM      ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI  A   ++D+P+  +++++ ++ GPD PTGG I+   + + ++YR GRG F++RA
Sbjct: 191 NLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRII-GLDGVADAYRTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  + A   R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLANGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F  N   L  G+ P+ + L  +L+ +L HR EV 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFATNAVCLVEGQ-PRTLGLIDMLQVYLDHRLEVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVMEAFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  + N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIANDKTELRRVVSGELAEVSAKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                RRT     + +  A      +  +P  V++S  G +  + S
Sbjct: 488 -----RRTVLLGAAPSVAAASVPLEVPDDPCWVLLSATGLLARIDS 528


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 353/634 (55%), Gaps = 44/634 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G    ++F K
Sbjct: 16  ERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPASSFSK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG       AA RYTE 
Sbjct: 76  SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP H
Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +D+   S    +E LL+ I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 196 NLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
             RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE++    
Sbjct: 255 TQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQIQGIADIRDETSGRTG 313

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  + ++  F  NM  L  G VP+ + +DG ++ W+ H+
Sbjct: 314 QRLVIVLK-RDAVAKVVLNNLYKRTPLQENFSANMLALVDG-VPRTLSIDGFIRHWITHQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D+ +  ++    +  
Sbjct: 372 IDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLIDLLDVDA 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL L+LR L  LE  +I  E   L A  + +  +L+  ++Q   I+ E+ E+ + 
Sbjct: 432 VQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDILDKPERQRTIISEELSEIVDK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRTT       D     + +I +E + V I+  G+         RS K   
Sbjct: 492 FGDE-----RRTTILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590
             +     + GD ++      TT   LL  T+       KAY +P G    GR   G+ +
Sbjct: 544 KGVRGTQLRGGDVVE-HFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG----GRDAKGQHV 598

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
             L+    ++ I        Y+    L++ +  G
Sbjct: 599 ANLLAFQPDERIAQVLAIRTYEDADHLVLATKSG 632


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 224/632 (35%), Positives = 361/632 (57%), Gaps = 40/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+AM + G      F K
Sbjct: 34  DRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFNK 93

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VGEV+G+ HPHGD S+YD+LVRL Q +  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 94  CSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYTEC 153

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  ++  +++ +D+  VDF   Y+ +  EP V PS+FPNLL NG+SGIAVGMAT IP H
Sbjct: 154 RMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIPPH 213

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+  AAL ++++P+ + +++L+ ++    GPDFPTG +I+  R+ I ++YR GRG  
Sbjct: 214 NLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIM-GRKGIEDAYRTGRGSI 272

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +G  C+VV+E+PYQV    L +KIAE +   R+  + DIRDE++    
Sbjct: 273 IMRAVVEVEEI-QGRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRTG 331

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  +  ++   +++ +++  + ++T F  NM  L  G VP+ +P+D  ++ W+ H+
Sbjct: 332 QRLVIVLRRDAV-AKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPIDAFIRHWVDHQ 389

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++ ++  + R+ IL+GLL A   +DE+IA+IR     +  +  ++    + E
Sbjct: 390 IDVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLIDLLEIDE 449

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL L+LR L  LE  +I  E D +  E E  + +L   ++Q N ++ E+  + E 
Sbjct: 450 IQARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDILAKPERQRNIVSDELGTIVEK 509

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+    +   D     + +I +E + V I+  G+ +  K   VD      
Sbjct: 510 YGDD-----RRSI---IHGFDGDMSMEDLIPEEDVVVTITRGGYAKRTK---VDAYRSQK 558

Query: 546 KEGDSLKIA------LHAH----TTDRILLLSTD------GKAYTLPAGNLLSGRGHGEA 589
           + G  +K A      + AH    T+   LL  T+       KAY LP  +  S   H   
Sbjct: 559 RGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDASRDSKGQHVAN 618

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           I       H   ++    Y+ +  L++ +  G
Sbjct: 619 IMAFQPDEHIAQVLALRNYEISPYLVLATKNG 650


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 314/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +    V   ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  A      +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 347/587 (59%), Gaps = 16/587 (2%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F+KSA+ VG+VIG+LH
Sbjct: 16  DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E IL+ +
Sbjct: 76  PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+  A L  I
Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNP++++++L++YI GPDFPTGG IV+  + I ++Y  G+G   VRA+  +E +  G   
Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY+V KS L++KI EL   K++  + ++RDE       V     + ++   ++ 
Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRVAVELKKDVNATSILN 314

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM  ++ GR P++M +  I+  +L H+ EV+ RR+SF ++  + R+
Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +AI+ L+L  L   + 
Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E D L  +   +  +L +     + I  E+ E+K+ F +       R +  E   
Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
           ++    ++ ++  E + + ++  G+I+     S + S    +  KE D +   +  +T D
Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
             ++ +  G+   +P   L  +  +  G+ +  ++ +  ++ +V  +
Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 266/779 (34%), Positives = 412/779 (52%), Gaps = 66/779 (8%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVE--EVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E  +VGR        IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    + +++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN       K    +
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE  +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R +K  F        RRT   +  +  K++    + ++EP T  +S +      K+ S+ 
Sbjct: 484 RSLKRKFGDP-----RRTRIVQPPKTPKSSSTPNVKKEEPPT-TLSPKTEESPRKTPSLT 537

Query: 540 L-SALHFKEGDSLKIALHAHTTDRI--------------------LLLSTD-GKAY---- 573
           L +     E   L+I      + R+                    L++ TD GKAY    
Sbjct: 538 LFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVITDAGKAYPVAV 597

Query: 574 ------TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFI 625
                 TL A  LLS    G         + N+ I   FV +      LL+++ +G    
Sbjct: 598 AEIPPLTLQAIPLLSLLPKGA------QRDANRVIDAGFVPNDPHGYDLLLLTQQGRIKR 651

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMS 682
           V+ SE+   T +G   +K+   +++  V     G  VA+     ++L + +  + IP M 
Sbjct: 652 VKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVTDEVIPLMG 711

Query: 683 R-GKGVRLQSYKDGGISDVICFKI-CEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R  +G +    ++ G + V C  +  +G +  I S G     S  +L   LGK G +G+
Sbjct: 712 RSAQGNQALKLRNVGETVVNCLTLHSQGEVLLISSLGYGKRLSLTEL--RLGKLGDLGT 768


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 345/611 (56%), Gaps = 44/611 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           GVD I+      +  V  V L   ++  +L YA+S I ERA+PD+RDG KPVHRR+I+ M
Sbjct: 26  GVDAIAGP---AKGRVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTM 82

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RYPL+SGQGNFG+ 
Sbjct: 83  YDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSP 142

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE RM  +A  +++ +D+  VDF+  Y+  D+EP V P++FPNLL NG++
Sbjct: 143 GNDGAAAMRYTECRMAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGST 202

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ EA    +++PE S E+LLE     + GPDFP G +IV  R+
Sbjct: 203 GIAVGMATNIPPHNLREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIV-GRK 261

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA   +EE  +G   +VVTE+PY      L +KIA+L+ + R+  
Sbjct: 262 GIEDAYRTGRGSVTMRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTG 321

Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + DIRD+S+     R+ +  K R   P ++M +++  + ++  F  NM  L +  VP+ +
Sbjct: 322 ISDIRDDSSARTGQRLAIMLK-RDAQPRVVMNNLYKHTQLQDTFGCNMLAL-VDNVPRTL 379

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            LD  ++ W+ H+ EV+ RR+  ++Q  ++   I +GL+ A   +DE+IA+IR     ++
Sbjct: 380 RLDQFIRYWVLHQIEVIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQ 439

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGK 469
               +     + + Q  AILN++LR L  LE  +I     ELD L+A+ + I  L N  +
Sbjct: 440 ASAGLQKLLDIDDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDI--LANRER 497

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           Q+    +    E+ EI  K  D  R +    E   +D     +  I  + + V I+  G+
Sbjct: 498 QR----SIVSNELGEIVGKYGDERRTQIIAAEGDFSD-----EDFIPDDDMVVTITRGGY 548

Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG------KAYTL 575
            +  ++            +     +  D ++  L A T  + +L  TD       K + L
Sbjct: 549 AKRTRTDQYRPQRRGGKGVRGATLRADDEVQ-HLFATTNHQWILFFTDHGRVYRIKTWQL 607

Query: 576 PAGNLLSGRGH 586
           P G   +  GH
Sbjct: 608 PEGGRDAKGGH 618


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%)

Query: 7   SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G
Sbjct: 8   ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 67

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D 
Sbjct: 68  YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAV
Sbjct: 128 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E     +D+PE S E+LL  +I    GPDFPTG  I+   + I +
Sbjct: 188 GMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQ 246

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+
Sbjct: 247 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 305

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDE++     R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 306 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 363

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+    +  +P 
Sbjct: 364 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPK 423

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 424 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 483

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+    EI +K  D   RRT     S        + +I +E + V +++ G+I+  K++
Sbjct: 484 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 535

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
                      +     +E D +       T + +L  +  G     KAY LP G+  S 
Sbjct: 536 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 594

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
              G+ +  L+    ++ I T     +    K LV++++
Sbjct: 595 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 631


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 198/494 (40%), Positives = 298/494 (60%), Gaps = 14/494 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM Q A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIV-GRNGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +  + D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +   + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLLKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR   + D  K  +++ F L E Q
Sbjct: 373 VIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIAVFDLDEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   +++SE D+L    E++D +L S +   N +  E+ E    + 
Sbjct: 433 AQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRILASAEALDNVVISEMDEAVATYG 492

Query: 488 KSTDLGRRRTTFCE 501
                  RRT   +
Sbjct: 493 TP-----RRTVLLD 501


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 225/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++   F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYFFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ +T G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 KLDDVVLISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQAAFIC 700


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 231/698 (33%), Positives = 385/698 (55%), Gaps = 27/698 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN     L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 3   ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + LI G GN+G+ D D AAA RYTEA
Sbjct: 63  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +++  V F+D ++    EPVV P++FPNLL NG SGI+ G AT IP H
Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +AL++ PE+++E++  ++ GPDFPTGGII+   E I E+Y  G+G   +R+
Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGGIIM-GEEGIREAYETGKGRIYLRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  + +RIV+
Sbjct: 242 KTEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  D   ++  +   +D++  +  NM V  + + P+ + L  +L+ ++AH+REV+ 
Sbjct: 302 ELK-KDADAQGILAYLLKKTDLQVTYNFNM-VAIVNKAPRQLGLKAMLEAYIAHQREVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
            R+ + ++ ++ R  +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q DA
Sbjct: 360 YRTQYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+L  L  LE   ++ EL+++  +   +  +L S K+    I  E+ E+++ +    
Sbjct: 420 ILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDKYG--- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----F 545
            + RR     EV    K  L + ++ +E + V IS  G+I+     S   S         
Sbjct: 477 -IDRRSHIQDEVEEL-KVNL-EVLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGV 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           KEGD +K  L   T   +L+ +  G+ + LP   +     + +G AI  +I L     IV
Sbjct: 534 KEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIV 593

Query: 604 T-----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVT 657
           +     +F  +    L+ V+  G     E  E            KV   +E + + V   
Sbjct: 594 SVIPVKSFDENPELSLVFVTKNGQVKRTELKEYEKKRSGAVAACKVGDGDEVLSVTVSRN 653

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              + ++ +    + F+ D++  M R   GVR  + KD
Sbjct: 654 NQEILLLTKQGMAIRFAEDEVNPMGRVSAGVRGINLKD 691


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/743 (31%), Positives = 420/743 (56%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+ GL+ A   +DE+I +IR +E++   +  +V  F  T NQ  AI+++RL
Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN+     N+I   + E K+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V    
Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+VS  G   +++ ++I     K   K+F  +K+S ++ +    ++     + 
Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +  I +   +Y 
Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           R + +L+  ++  + G+  LV K
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y++  I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 336/575 (58%), Gaps = 16/575 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V +   ++  +L YA S I  RA+PD RDG KPVHRRI++  +EMGL       
Sbjct: 15  EERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEMGLRPERGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+G+LHPHGD S+YD++VRLAQPF  R PLI G GNFG++ + D  AA RYT
Sbjct: 75  KCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGNDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+T  +  +++ + ED VDF   Y+  + EP V PS FPNLL NG +GIAVGMAT++P
Sbjct: 135 ESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGIAVGMATNMP 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 195 PHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIV-GLSGIRDAYESGRGTFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++I KI +L+ AK++  + D++D  +    +R
Sbjct: 254 RATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDLTDREHGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ L+E ++ L+ ME  F +N   L  G+ P  + L  +L+ ++ HR  
Sbjct: 314 LVIEVKN-GFVPEALLEQLYKLTPMEETFGINNVALVDGQ-PLTLGLKELLEVYVDHRFT 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+IA+IR+ D   + K  ++ RF L+E Q
Sbjct: 372 VVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMERFGLSETQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  ++++E   LL E  ++  +L S  +  + ++ E+  V + F 
Sbjct: 432 TAYILDTPLRRLTRFDRVELEAEQSKLLKEIAELTEILESDHKLRSVVSSELGSVAKQFG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI-RSLKSHSVDLSALHF 545
                  RRT   E      A L   + +  +P  V++S+ G + R+     V   +   
Sbjct: 492 TE-----RRTVLLEAGSVPSAALAVPLEVADDPCRVLLSSTGLLARTFDLKPVTEESAAR 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            + D L  A+ A     + L++T G+   LP  +L
Sbjct: 547 AKHDVLASAVPATARGDVGLVTTAGRVLRLPVIDL 581


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 335/587 (57%), Gaps = 33/587 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 13  DRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPDRGYVK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 73  SARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +D + VDF   Y+ +  EPVV PS+ PN+L NG++GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    +DN     E ++   +E I GPDFPT G+IV + + I ++Y  GRG  
Sbjct: 193 NLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGT-QGIHDAYTTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  RG   IV+TE+PYQV     I  IAE +   +I  + DI DES++ V 
Sbjct: 252 KMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGIADIHDESSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRLYVNHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR   N D  +  ++    + E
Sbjct: 370 LDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTARTGLMELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE      +L+  ++Q   +  E+ E+ E 
Sbjct: 430 IQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDILDKPERQRAIVRDELAEIVEK 489

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT   ++  AD     + +I +E + V I+  G+         RS K   
Sbjct: 490 YGDE-----RRT---QIVSADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
             +     K+ D +K      T D +L  +  G     KAY LP  N
Sbjct: 542 KGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEAN 588


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 227/700 (32%), Positives = 399/700 (57%), Gaps = 28/700 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++E +L+ +++D V F   Y++  +EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+IS+ +L++Y+ GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLGEVIQATLKYIDNPDISVSQLMKYVKGPDFPT-GGIIQGIDGIKKAYETGKGRIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
               E +  G   ++VTEIPY+V KS L++KI EL   KR+  + ++RDE+      +  
Sbjct: 242 TVETETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ D ++  ++  +D++  +  NM  +S GR P++M +  I+  +L H+ +V+ +
Sbjct: 302 ELKKDVNSDAILNFLYKNTDLQISYNFNMVAISDGR-PKLMGIREIIDSYLNHQIDVVTK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+IAIIR   N+   K  +V+ F  TE Q +AI
Sbjct: 361 RTRYDLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAEFDFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A+   + ++L++     N I  E++E++  F K+  
Sbjct: 421 VTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHDALLNVIKDELKEIRTRF-KTER 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFK 546
           L R      E+  +     ++ ++  E   + +S  G+I     RS  ++ VD   L  K
Sbjct: 480 LSRIEAEIAEIKIS-----KEVIVPSEETILSLSRDGYIKRTSVRSFNANRVDEVGL--K 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD+L   L  +T    L+ +  G+   LP   L  +  +  G+ I  L+ + +++ ++ 
Sbjct: 533 EGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKDLGQHISQLVPIENDEYVLD 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
            F    +       ++++K       E E+   TR  K    +K+   +++  V+++  D
Sbjct: 593 VFTEPDFKQNAD-YIMATKNGMIKKSELELFKTTRFNKPLIAMKLKDNDELINVMRIEAD 651

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI 697
             + +V      L +S D++     R  GV+  + KD  +
Sbjct: 652 QLITIVTHTGMSLTYSTDELSSTGLRAAGVKSINLKDDDV 691


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/696 (30%), Positives = 392/696 (56%), Gaps = 24/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 21  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 80

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 81  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 141 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 201 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 259

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 260 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 319

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 320 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 378

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 379 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKVSYDFTEEQAEAIV 438

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F      
Sbjct: 439 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 495

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             RR+   + ++  +      ++E+E   V ++  G+I+     S + S +     ++ D
Sbjct: 496 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 552

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L   +    GE + Q L +    ++I+ A 
Sbjct: 553 ELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 612

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
           + D          + +G     E  E+    T + K+  + K+  + +++  V  V  + 
Sbjct: 613 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDRIVAVAPVVLED 672

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           + ++ +N   L F+++++P + ++  GV+  + KDG
Sbjct: 673 IMIITKNGYGLRFNVEEVPVVGAKAAGVKAINLKDG 708


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 221/707 (31%), Positives = 405/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E +NL+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESENLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
             R  T   E+      T  Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 --RLTTIQDEIEEIKIDT--QVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 248/742 (33%), Positives = 390/742 (52%), Gaps = 70/742 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+   +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++      A+KK
Sbjct: 3   ESKSTLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFG+IDGDS AA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEV 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +++  VD+   Y+E++ EP V P+K PNLL NG  GIAVGMAT+IP H
Sbjct: 123 RMQKLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A++ALID+P I + +L  Y+ GPDFPTGG+I+ +   I  +Y  GRG  +VRA
Sbjct: 183 NLTELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGT-AGIRSAYLTGRGSVKVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE  +G   I+VTEIPYQV K+RLIE+IA L+  K++  + DI+D S      +  
Sbjct: 242 RCEIEEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +     +++  ++ +SD++T F +NM  +  GR P+V+ L+  L+ ++ HRR V+ R
Sbjct: 302 QVKKDHAAQIVLNKLYKMSDLQTSFGVNMIAIVNGR-PEVLNLEKCLRHFIDHRRTVVTR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420
           R  + +     R EI++GL +A  +ID +I +IR   + D+ K  +++            
Sbjct: 361 RCRYELAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDGFAKFLER 420

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L E Q  AIL++RL+ L  LE  +++ E   L     +++S+L
Sbjct: 421 CERPAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESIL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------MIE 516
               +    I  E+  ++  +      GR      E S+  + T   A         ++ 
Sbjct: 481 TDPDKLMAVIREELLAIR--YEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVA 538

Query: 517 KEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E + V+I+ + +++ L +          V L +   ++ D   I L   +    +LL T
Sbjct: 539 DESMVVMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFT 598

Query: 569 DG------KAYTLPAGNLLSGRGH-GEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLV 616
           +       + +  P G     RG   +A+   +DL   + I+    Y     D    +++
Sbjct: 599 NTGRVFRKRVFEFPLGT----RGQRPKALVNFLDLKEGEQILEMVAYREEEVDDDHFVVL 654

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G       SE   N R          E  M +  K+T     ++  +R+      D
Sbjct: 655 ASRQGYIKRTSLSE-FQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFD 713

Query: 677 QI---PEMSRGKGVRLQSYKDG 695
           +    P     +GVR    +DG
Sbjct: 714 EADVRPMGRTARGVRGMGLRDG 735


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 323/574 (56%), Gaps = 27/574 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  V +   +E  +L Y+ S I  RA+PD RDG KPV RRI+  M +MGL       K
Sbjct: 21  EHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGLRPDRGHVK 80

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 81  SARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGPAAPRYTEA 139

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   +DED VDF   Y+ +  +P V P+ +PNLL NG +GIAVGMAT++  H
Sbjct: 140 RMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVGMATNMAPH 199

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+   A  L+ NPE ++E+L++ I GPD P+GG IV   E I ++YR GRG FR RA
Sbjct: 200 NMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIV-GLEGIRDAYRTGRGSFRTRA 258

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              VE+V      IVVTE+PY V   ++ EKI + + AK++  + D+ D  +    +R+V
Sbjct: 259 TVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTDRTNGLRLV 318

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P  ++  ++  + +E  F +N   L  G+ P+ M L  +L+ +  HR  V+
Sbjct: 319 IEVKN-GFNPQAVLAQLYRHTPLEESFGINNVALVDGQ-PRTMGLLELLRVYTDHRIAVV 376

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR++FR+     R+ +++GLLIA L+IDE+I IIR  ++       +++ F L+  Q +
Sbjct: 377 RRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIAVFDLSRAQAE 436

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L  E  +++++L S       +A E+ E  + F   
Sbjct: 437 HILELRLRQLTKFSRIELEAERDQLQKEIAELEAILGSETTLRGVVADELSETAQKFGDE 496

Query: 490 TDLGRRRTTFCEVSRADKATLQQA-----------MIEKEPITVVISNRGWI-RSLKSHS 537
                RRT   E       T  Q             I  +P  V +S  G I RS     
Sbjct: 497 -----RRTVLLEAEDLPAVTAAQTGGKKAATSVALEISDDPCWVFLSTTGRIARSATRRP 551

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +   +  FK  D+L   + A     I  +++ G+
Sbjct: 552 LADGSRRFKH-DALTSVVPATARGEIAAVTSTGR 584


>gi|333023996|ref|ZP_08452060.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
 gi|332743848|gb|EGJ74289.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
          Length = 822

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 240/716 (33%), Positives = 383/716 (53%), Gaps = 48/716 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D  +    +R
Sbjct: 261 RASVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREHGLR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q
Sbjct: 379 VVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + + 
Sbjct: 439 TQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546
                  RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    
Sbjct: 499 TP-----RRTVLLESADTPVAAI-PLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRA 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGK-----AYTLP-----AGNLLSGRGHGEAIQLLIDL 596
           + D ++ A+ A     +  +++ G+        LP     AG  L G   G  +   + L
Sbjct: 553 KHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVG---GAPVAEFVRL 609

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             ++ +V     D +   L + +          +  AN             E+++++   
Sbjct: 610 EGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPAN------------REELEVITLR 657

Query: 657 TGDHVAVVGENR---KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
            GD +    E R   + L+F  D    +  +   VR Q    GG++ V   K+ +G
Sbjct: 658 EGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGV---KLADG 710


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG+ S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/494 (40%), Positives = 298/494 (60%), Gaps = 14/494 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM Q A  +   + ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG+IV  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIV-GRKGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLFKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVNHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  ++  F L E Q
Sbjct: 373 VIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIKVFDLDEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++D +L S +   + +  E+ E    + 
Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRILASAEALDDVVIAEMDEAVATYG 492

Query: 488 KSTDLGRRRTTFCE 501
                  RRT   +
Sbjct: 493 TP-----RRTVLLD 501


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%)

Query: 7   SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G
Sbjct: 30  ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 89

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+   D 
Sbjct: 90  YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 149

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+SGIAV
Sbjct: 150 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 209

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E     +D+PE S E+LL  +I    GPDFPTG  I+   + I +
Sbjct: 210 GMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQ 268

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+
Sbjct: 269 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 327

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDE++     R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 328 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 385

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+    +  +P 
Sbjct: 386 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPK 445

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 446 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 505

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+    EI +K  D   RRT     S        + +I +E + V +++ G+I+  K++
Sbjct: 506 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 557

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583
                      +     +E D +       T + +L  +  G     KAY LP G+  S 
Sbjct: 558 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 616

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
              G+ +  L+    ++ I T     +    K LV++++
Sbjct: 617 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 653


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 238/686 (34%), Positives = 374/686 (54%), Gaps = 40/686 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + K
Sbjct: 25  DRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE 
Sbjct: 85  CSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTEC 144

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP H
Sbjct: 145 KLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPH 204

Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I ++YR GRG  
Sbjct: 205 NLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQAGIQDAYRTGRGSI 263

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+    
Sbjct: 264 RMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTG 323

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ H+
Sbjct: 324 MRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVEHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLDIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q  +I  E  E+ EI
Sbjct: 442 VQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQ-RRIVSE--ELGEI 498

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
            +K  D   RRT        D     + +I +E + V I+  G+         RS +   
Sbjct: 499 VAKWGD--DRRTKIVPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +S    ++ D +       T D IL  +  G     KAY LP  + ++    G+ +  
Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVA---KGQHVAN 610

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+    ++ I        Y     L++ +  G        E  +N   G   + +  E++
Sbjct: 611 LLAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDE 670

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFS 674
           +   V V   D + +V +N + + F+
Sbjct: 671 LVGAVLVAPEDDLLLVSKNAQAIRFN 696


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 234/703 (33%), Positives = 391/703 (55%), Gaps = 30/703 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I+ERA+PD RDG KPV RRI++AM   G  F    +KSA+ VG VIG  H
Sbjct: 26  ERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNTFDHQHRKSAKTVGLVIGNYH 85

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VR++Q +  R PLI   GN G+ID D AAA RYTEAR+ ++A  +L+ +
Sbjct: 86  PHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAAAMRYTEARLAKIAGTLLEDI 145

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D V F   +++ ++EP V P++FP LL NG +GIA G AT+IP HN+ E+ +AA+  +
Sbjct: 146 DKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGYATNIPPHNLSEVIDAAIYRM 205

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P+ S+E+L+E + GPDFPTGGI++  ++ IV+++  G+G   +RAR    E+  G  C
Sbjct: 206 QRPKCSLEELMEILPGPDFPTGGIVM-GKKGIVDAFTTGKGRVVIRAR---TEIVTGKTC 261

Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I++ EIPY+V KS ++ K+ ++ +++ I  + DIRDE+    +RIV+  K +  DP++
Sbjct: 262 NQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRTGLRIVIDVK-KDADPNV 320

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++   +  +D++  +  NM V  + + P  M L G+L  ++AHR EV+ RRS +    ++
Sbjct: 321 ILNYFYKNTDLQIYYSYNM-VSIVNKRPVQMGLIGMLDAFIAHREEVVLRRSRYLYNKME 379

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL+ A   +DE+IA+IR ++DK   K  +   F  +E Q +AI+ LRL  L  
Sbjct: 380 ERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTESFGFSETQAEAIVTLRLYRLTS 439

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            +   ++ E   L+ E E + ++L S     + +  E+RE+K+ ++      RR     E
Sbjct: 440 TDIVALREEFAQLVNEMEMLKTILESETVLKSVLIKELREIKKEYADP----RRSEIQAE 495

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH-FKEGDSLKIALHAH 558
           V        + AMI  E + +  S  G+++  SL+S+    +A+   KEGD L   L   
Sbjct: 496 VEEI--VIDKTAMIPNERVMITASRDGYVKRVSLRSYGASDNAMTGLKEGDVLVGQLEVD 553

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T D +LL ++ G    LP   +   +    G  +   + ++ +  I+ A V   + S   
Sbjct: 554 TLDTLLLFTSKGNYAHLPVYQIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFSSYAW 613

Query: 614 LLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
           ++ VS +G      + + ++  N +          +E M+  V    + + ++  +  + 
Sbjct: 614 IVTVSRRGQVKKTPISQWQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRSGWIS 673

Query: 672 IFSIDQIPEM-SRGKGVR-LQSYKDGGISDVICFKICEGLTWI 712
            +S D +P   ++ +GV+ L   KD  ++    +       W+
Sbjct: 674 RYSSDLVPANGTKSQGVKALNLAKDDTLAAACSYSDERQSLWV 716


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 248/727 (34%), Positives = 391/727 (53%), Gaps = 71/727 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  + +  KK+AR+V
Sbjct: 76  VSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVWSSPTKKAARVV 135

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD + Y ++VR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTE ++ ++
Sbjct: 136 GEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAAMRYTEVKLMKI 195

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  + ED VDF   ++  + EPVV P++ P LL NG+SGIAVGMAT+IP HN++E 
Sbjct: 196 AEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMATNIPPHNLRET 255

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +  +++P+ S++ L+  I  PDFPTGGI+      + E YR GRG   +RAR  +E
Sbjct: 256 IDACVHALEHPDCSVDDLIALISAPDFPTGGIVY-GLSGVYEGYRTGRGRVIMRARTHLE 314

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E GR      IVV EIPY V K  L E++ EL   K++  + ++RDES   +RI +  K 
Sbjct: 315 EFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTRQIRIAIDLKQ 374

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            ++ P++++ ++F  + M+  F +NM  L  G+ P ++ L  ++  +L HRREV+ RR+ 
Sbjct: 375 GAM-PEVVLNNLFKNTQMQESFGMNMVALVDGQ-PMLLNLKQMVVYFLEHRREVVTRRTI 432

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM-----------VSR-- 420
           FR++       IL G  IA  NIDE I +IR     E+  + +M           ++R  
Sbjct: 433 FRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLGFAAEITRRA 492

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LT+ QVD IL + LR L  LE  +I   L +  A 
Sbjct: 493 AEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKI---LADYAAT 549

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+I  L++    +  ++   I+E  E+ +     G  R +  ++S  D    ++ +I +
Sbjct: 550 MERIFDLIDI-LHKPERVTAIIKE--ELLACREAYGDERRSTIDLSE-DTNFNKRDLIPR 605

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTD 569
             + V ++  G+++S +    +  +   K          D ++    A+T D IL  ST 
Sbjct: 606 RDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFSTA 665

Query: 570 GKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV-----YDSTCKLLVVSSKGN 622
           G+ Y +   +L  G+ +  G  I  L+ L  N+ I  +F+     +     + + + +G 
Sbjct: 666 GQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKI--SFILPIQEFSEDRYMFLATDRGT 723

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
                 S   ++ R+G     +  E+ + + +    D V ++ +N + + F    I  M 
Sbjct: 724 VRRTPLS-AFSSARRGIRATNLGDEKLVGVTITSGDDDVFLLADNGRCVHFKESTIRVMG 782

Query: 683 R-GKGVR 688
           R   GVR
Sbjct: 783 RTAHGVR 789


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 339/594 (57%), Gaps = 33/594 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + K
Sbjct: 25  DRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE 
Sbjct: 85  CSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTEC 144

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP H
Sbjct: 145 KLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPH 204

Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I ++YR GRG  
Sbjct: 205 NLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQSGIQDAYRTGRGSI 263

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308
           R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+    
Sbjct: 264 RMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTG 323

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ H+
Sbjct: 324 MRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVEHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q  +I  E  E+ EI
Sbjct: 442 IQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDILAKPERQ-RRIVSE--ELGEI 498

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
            +K  D   RRT        D     + +I +E + V I+  G+         RS +   
Sbjct: 499 VAKWGD--ERRTKIIPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
             +S    ++ D +       T D IL  +  G     KAY LP  + ++   H
Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQH 607


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/630 (35%), Positives = 353/630 (56%), Gaps = 36/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G    ++F K
Sbjct: 16  ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPSSSFSK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG       AA RYTE 
Sbjct: 76  SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP H
Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       + +PE + E+LLE ++    GPDFPTG  I+  R+ I ++YR GRG  
Sbjct: 196 NLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATIL-GRKGIEDAYRTGRGSI 254

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
             RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I  + DIRDE++    
Sbjct: 255 TQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  + ++  F  NM  L  G VP+ + +DG ++ W+ H+
Sbjct: 314 QRLVIVLKRDAV-AKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWITHQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D+ +  ++    +  
Sbjct: 372 IDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARVGLIDLLDVDA 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL L+LR L  LE  +I  E   L A  + ++ +L + ++Q   I+ E+ E+ + 
Sbjct: 432 VQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILATPERQRAIISAELSEIVDK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRT        D     + +I +E + V I+  G+         RS K   
Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEAIQ 591
             +     ++ D ++      TT   LL  T+       KAY +P G   +   H   + 
Sbjct: 544 KGVRGTQLRDDDVVE-HFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGGRDAKGQHVANLL 602

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
                 H   ++    Y+    L++ + +G
Sbjct: 603 AFQPDEHIAQVLAIRTYEDADYLVLATKRG 632


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/743 (31%), Positives = 420/743 (56%), Gaps = 41/743 (5%)

Query: 24  FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LEE    R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+V
Sbjct: 10  YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T++
Sbjct: 70  GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI
Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++  G+G   + ++W  E
Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N  
Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F 
Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436
           +   + R+EI+ GL+ A   +DE+I +IR +E++   +  +V  F  T NQ  AI+++RL
Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  ++  E   L+ + +K   +LN+     N+I   + E K+ F      G +R
Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553
            +  E    D    Q+ +I ++ I + IS  G+I+ + ++ ++   LS+   K  D    
Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---- 607
                  D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V    
Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661
            +ST  LL+VS  G   +++ ++I     K   K+F  +K+S ++ +    ++     + 
Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +  I +   +Y 
Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712

Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742
           R + +L+  ++  + G+  LV K
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 225/697 (32%), Positives = 394/697 (56%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   +F  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+I +IRN    K     +V+ F  TE Q +AI
Sbjct: 361 RTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + L+L  L   +   ++   +EL NL+ E   I   L++       I  E+ ++++ F K
Sbjct: 421 VMLQLYRLTNTDIVALENEHNELANLIKEYRHI---LDNHDALLQVIKSELTDIRKRF-K 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
           S  L        E+ + DK    + M+  E + + I+ +G+I+   + S + S +     
Sbjct: 477 SERLSSIEAEIAEI-KIDK----EVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ L+  + +V
Sbjct: 532 KDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVV 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   S       V++++          +   TR  K    +KV   +++  V+++  D
Sbjct: 592 DVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKPLVAMKVKDNDELINVIRLNED 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 652 QLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKD 688


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 239/716 (33%), Positives = 384/716 (53%), Gaps = 48/716 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+ + +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 261 RATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q
Sbjct: 379 VVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + + 
Sbjct: 439 TQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546
                  RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    
Sbjct: 499 TP-----RRTVLLESADTPVAAI-PLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRA 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGK-----AYTLP-----AGNLLSGRGHGEAIQLLIDL 596
           + D ++ A+ A     +  +++ G+        LP     AG  L G   G  +   + L
Sbjct: 553 KHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVG---GAPVAEFVRL 609

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             ++ +V     D +   L + +          +  AN             E+++++   
Sbjct: 610 EGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPAN------------REELEVITLR 657

Query: 657 TGDHVAVVGENR---KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
            GD +    E R   + L+F  D    +  +   VR Q    GG++ V   K+ +G
Sbjct: 658 EGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGV---KLADG 710


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/541 (38%), Positives = 333/541 (61%), Gaps = 19/541 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMGL       
Sbjct: 15  EERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS+R+VG+V+GKLHPHGD ++YD+LVR+AQPF  R PLI G GNFG+ D D  AA RYTE
Sbjct: 75  KSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-DLPAAMRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+   A  ++Q +DED VDF+  Y+ +++EP V PS FPNLL NG +GIAVGMAT++  
Sbjct: 134 ARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIAVGMATNMAP 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  AA  LI  P+ +++ L+ ++ GPD PTGG I+   + I ++Y  GRG FR+R
Sbjct: 194 HNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTII-GLDGIRDAYAKGRGTFRMR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRI 311
           A+  VE+V      I+VTE+P+ V   R++ KI EL+ AK++  + D++D S   + + +
Sbjct: 253 AKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLSDRHKGLNL 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN  + P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++ HR +V
Sbjct: 313 VIEIKNGFI-PEAVLEELYRLTPMEETFGINNVALVEGQ-PRTLGLRELLQVYVDHRLDV 370

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RRS++R +  + R+ +++GL+IA LNIDE+I +IR+ D   + +  ++  F L+E Q 
Sbjct: 371 VRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLMEVFELSEIQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + ++ ++  E + L +E  ++ ++L+S  +    ++ E+ +V + F  
Sbjct: 431 AYILDTPLRRLTRFDKLELDGEKETLESEIAELTAILSSEDKLRKVVSDELAQVSKTFGT 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT   E S   +       +  +P  V+ S+ G +    + + D S L   EG
Sbjct: 491 P-----RRTVLLESSGVTRNASVPLEVADDPCLVLFSSTGLL----ARTTDASPLA-GEG 540

Query: 549 D 549
           D
Sbjct: 541 D 541


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  A      +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIINDKAELRRVVSGELVEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  A      +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 405/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/715 (32%), Positives = 394/715 (55%), Gaps = 50/715 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T    N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  F  
Sbjct: 2   TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ +D+  V+    +++ + EP V P++FPNLL NG +GI+ G AT 
Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E   A + L+D+PE  ++ L+++I GPDFPTGGI++   + I ++Y  GRG  
Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIML-GLDGIKKAYETGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309
            +RAR  +E+V      IV+ EIPY+V K+ L++KI E+ + K+   + ++RDES  E +
Sbjct: 241 MLRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGL 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K +  +   ++  +F  +D++  +  NM  +   + P+ + L  IL+ +L H+R
Sbjct: 301 RIVVELK-KDANAQGILNYLFKNTDLQISYNFNMVAIDH-KCPKHVGLKKILESYLEHQR 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ +R+ F +     R  I+ GL+ A   +D++I  IR   N+   K  +VS F  TE 
Sbjct: 359 IVVTKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVSSFDFTEK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +   +++E ++L     +   +LN+GK+    I  E++ + + +
Sbjct: 419 QAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKILNNGKELDKVIKKELKTIDKKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543
                 G  R T       +     + M+ +E + +++S  G+++  SL+S  + D S  
Sbjct: 479 ------GTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYVKRSSLRSFKASDESDN 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             KE D + +   A+T D +L+ +  G     P  +++  R    GE +   + L+ ++ 
Sbjct: 533 GLKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDER 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESE------IIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ AF +DS         K  AF+    E      ++ + + G+T+    S  +  + +K
Sbjct: 593 VIEAFTFDSL-------EKEGAFVFATKEGMIKQTLLKDLKPGRTY---RSRAQTFIKLK 642

Query: 656 VTGDHVA----VVGENRKLLIFS-----------IDQIPEM-SRGKGVRLQSYKD 694
              D V     V  EN  L +F            ++++P   +R  GV+    +D
Sbjct: 643 TDTDEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEVPTTGARTSGVKCMDLRD 697


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++    D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
            A V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K  D   +  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQAAFIC 700


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +     L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I+KGL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 251/770 (32%), Positives = 409/770 (53%), Gaps = 49/770 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 12  DRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 72  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +A   L++NP      ++E  + Y+ GPDFPT G IV S + I ++Y  GRG  
Sbjct: 192 NLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGS-QGINDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++  +  I DES++ V 
Sbjct: 251 RMRGVTSIEEEG-SRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+
Sbjct: 310 MRIVVTLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVTHQ 367

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+  R++  ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E
Sbjct: 368 IEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARSGLIDLLTIDE 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q    A    E+KEI
Sbjct: 428 IQADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDILAKPERQR---AIVRDELKEI 484

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
            +K  D   RRT   ++  A     ++ +I +E + V I++ G+ +  K  +        
Sbjct: 485 VTKYGD--ERRT---QIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGG 539

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++
Sbjct: 540 KGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 599

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-K 651
               + I        Y+    L++ +++G       S+  +N   G   + +  E+K+  
Sbjct: 600 FQPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLGEEDKLIG 659

Query: 652 LVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYKDGGISDVICFKI 705
             +    D + +V E  + + FS   DQ+  M R     KG+R +     G   ++   +
Sbjct: 660 AALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMRFR-----GDDQLLAMTV 714

Query: 706 CEGLTW--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  + ++G    R+  +     G RGG+G +  K  P+ GK +++
Sbjct: 715 VRSDAYLLVATSGGYGKRTSLEEYSQQG-RGGLGVVTFKYTPKRGKLIAA 763


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 405/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
 gi|332675446|gb|AEE72262.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 844

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P   +++++ ++ GPD PTGG I+   + I ++Y  GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE D L    E +  ++N   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  A      +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/481 (41%), Positives = 301/481 (62%), Gaps = 14/481 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+V
Sbjct: 16  TALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCARVV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RYTE R+  +
Sbjct: 76  GDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRLAGI 135

Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             + +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+IP HN+ E
Sbjct: 136 GDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPHNLGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG   VR     
Sbjct: 196 VVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDD-TGIREAYRTGRGIIPVRGVAKT 254

Query: 259 EEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           E +       R    IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDES  E +R+
Sbjct: 255 ETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREGIRV 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K  S  P  ++ +++  + ++T F   +  L +   P+ + L  +L+E+L  R   
Sbjct: 315 VIELKRES-QPQQVLAALYQQTALQTNFGAIILAL-VDNQPRQLSLKQVLQEFLRFRETT 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           L R+    +Q    R+ +++GLL+A  NID ++ I++N       K    +   +++ Q 
Sbjct: 373 LTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAELGISDAQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D+IL + LR L  LE  ++++E   L A+ +++++LL++ ++    +  E+R +K+ F+ 
Sbjct: 433 DSILAMPLRRLTGLERQKLETEATELQAKIQQLETLLHNRQEFLKSLKKELRSLKKKFAD 492

Query: 489 S 489
           S
Sbjct: 493 S 493


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 225/697 (32%), Positives = 393/697 (56%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   +F  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+I +IRN    K     +V+ F  TE Q +AI
Sbjct: 361 RTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + L+L  L   +   ++   +EL NL+ E   I   L++       I  E+ ++++ F K
Sbjct: 421 VMLQLYRLTNTDIVALENEHNELANLIKEYRHI---LDNHDALLQVIKSELTDIRKRF-K 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
           S  L        E+ + DK    + M+  E + + I+ +G+I+   + S + S +     
Sbjct: 477 SERLSSIEAEIAEI-KIDK----EVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ L+  + +V
Sbjct: 532 KDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVV 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   S       V++++          +   TR  K    +KV   +++  V+++  D
Sbjct: 592 DVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKPLVAMKVKDNDELINVIRLNED 651

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
             ++V+      L +S +++ +   R  GV+  + KD
Sbjct: 652 QLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKD 688


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 264/774 (34%), Positives = 415/774 (53%), Gaps = 64/774 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++   +L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 19  HIIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLSPDRPYRKC 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG+ID D  AA RYTE R
Sbjct: 79  ARVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSIDNDPPAAMRYTETR 138

Query: 136 MTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ V+ E +L  + ED VDF D ++    EPVV P + P LL NG+SGIAVGMAT++P H
Sbjct: 139 LSPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGSSGIAVGMATNMPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALID+PEI  EKL   I  PDFPTGG IV+    + ++YR GRG   +R 
Sbjct: 199 NLGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIVD-LAGVRDAYRTGRGIIPMRG 257

Query: 255 RWCVE--EVGRGSW----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +E  +VGR        +VVTE+PYQV K+  IEKIA+L+   +I  + DIRDES   
Sbjct: 258 IVHLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKISGISDIRDESDRQ 317

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAH 367
              V+    R  +P+ +++ ++  + +++ F     +LS+    P+ + L  IL+E+L  
Sbjct: 318 GMRVVIELKRDAEPEKVLKLLYKKTALQSNF--GAILLSLVNNQPRQLSLKAILQEFLEF 375

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           R E + R+  + ++  + R   ++GLL+A  N+D +I I+RN       K    +    +
Sbjct: 376 REETVTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTAKQQFQAALGFS 435

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E+Q DAIL + +R L  LE  +++ E   L  E  K++ LL+   +    +  E+R +K 
Sbjct: 436 ESQSDAILAMPMRRLTGLERQKLEQESTELATEIAKLNKLLSDRHELLKALKRELRSLKR 495

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL- 543
            F+       RRT   +V   +    +   +E EP T   + +   +S K     L+ L 
Sbjct: 496 KFADP-----RRTRLPDVPSPEP---EPVTVEAEPDTPAATPKKKRQSRKKEEPVLALLP 547

Query: 544 HFKEGDSLKIALHAHT----------------------TDRILLLSTD-GKAYTLPAGNL 580
              E   + IA                           T + L++ TD GKA+ +   +L
Sbjct: 548 QLTETSHVAIAASGGVYWGNDDAGLLDEEPTIFKAQIGTQKKLIVCTDQGKAFPVAIADL 607

Query: 581 --LSGRGHGEAIQLLID--LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIA 633
                R   + I LL D  L  +   +T F+         LL+++++G    +   E+ +
Sbjct: 608 PYQEQRDKPQLIDLLPDHALRDDHQPITQFLLPDNLAEYDLLLLTAQGRIKRLPAIELES 667

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSR----GKG 686
            T +G + +K+  ++ +K    V  G+ VA+   + ++L   ++  +IP M R     + 
Sbjct: 668 FTSRGLSLIKLKDKDTLKFACFVKGGEQVAIAVSSGRVLHLPVNDHEIPVMGRTSQGNQA 727

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +RL+ + +  ++ V C +  E L  I   G     + + L   LGKRG +G+ V
Sbjct: 728 LRLR-FNEQIVACVPCQRHNE-LYLISEEGYGKKLAASSL--RLGKRGDMGNHV 777


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/707 (30%), Positives = 403/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK------------TFLKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR  +            + +K+ +EE   + 
Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 341/594 (57%), Gaps = 34/594 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  + E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGT-QGISDAYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVEHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARVGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q    A    E+ EI
Sbjct: 431 IQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQR---AIVRDELAEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGDDRRTR-----IIAADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
             +     K+ D ++      T D IL  +T G     KAY LP   L + RG 
Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEA-LRTARGQ 595


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 222/708 (31%), Positives = 397/708 (56%), Gaps = 33/708 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
            R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     ++
Sbjct: 475 -RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRD 529

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+ 
Sbjct: 530 DDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILY 589

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVT 657
             V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  + 
Sbjct: 590 VEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIK 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
            D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 LDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 697


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 231/625 (36%), Positives = 348/625 (55%), Gaps = 60/625 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   +   ++ YA+S I  RA+PD RDG KPVHRRI+ A   +   +   + K 
Sbjct: 6   NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD SVYD+LVR+AQ F  RY L+ GQGNFG+IDGD  AA RYTE R
Sbjct: 66  ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VD++  Y++++ EP V P+K PNLL NG SGIAVGMAT+IP HN
Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+++P++  E+L E + GPDFPTGGII         ++ LGRG   +R R
Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRA-AHTLGRGAVVIRGR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E V +    IVVTE+P+ V KSR IE  A L+  KRI  + DIRDES      V+F 
Sbjct: 245 TQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ ++F ++ ++T F +NM  +  GR PQV+ L   L+ ++ HRR V+ RR
Sbjct: 305 LKRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGR-PQVLSLRSALQVFIEHRRTVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------ 420
             F ++    R EI++GL +A + ID +I IIR   + D+ K  ++S             
Sbjct: 364 CLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERA 423

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+  Q  AIL++RL  L  LE  ++++E   L    + ++ +L
Sbjct: 424 GRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               +    I  E+RE+++ ++       RRT   E+   +   L + +I+ E + V  +
Sbjct: 484 GDDVKLRGVIVDELREMRDQYADP-----RRT---EIVDQEGEILDEQLIKVEDMVVTRT 535

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALH-----------AHTTDRILLLSTDG---- 570
            RG++   K  ++D  +   + G  ++ A             A T D +L+ +  G    
Sbjct: 536 RRGYV---KRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQ 592

Query: 571 -KAYTLPAGNLLS-GRGHGEAIQLL 593
            K Y LP+G+ +S GR     I+ L
Sbjct: 593 KKVYELPSGSRISKGRPFVNVIEAL 617


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/603 (33%), Positives = 363/603 (60%), Gaps = 17/603 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY 608
           F Y
Sbjct: 598 FPY 600


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   SA+     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASAIDEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A T   +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFGQSAKTIQHLLMFTSLGNVIYPPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V ++ +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 344/570 (60%), Gaps = 42/570 (7%)

Query: 63   EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            ++ +D    F  +  +V   +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+ID
Sbjct: 487  DIQVDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSID 546

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            GDS AA RYTEAR+++++  +L+ +++D VDFR  ++E  +EP V P++FPNLL NG++G
Sbjct: 547  GDSQAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSAG 606

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            IAVGMAT+IP HN++E+C+A   ++D+ E    +LL+++ GPDFPTG  I+   E++ + 
Sbjct: 607  IAVGMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINP-ENLKKI 665

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            Y  GRG   +RA+  +EEV R    IV+TE+PYQV K+ LI++IA+L+  K+I  + DIR
Sbjct: 666  YETGRGSVTIRAKHTIEEV-RKKTAIVITELPYQVNKAALIKQIADLVKEKKIDGISDIR 724

Query: 303  DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            DES  E +R+V+  K R   P++++  ++  + ++T F  NM  L  G  P+++ L   L
Sbjct: 725  DESDREGIRVVIELK-RDATPEVVLNKLYKFTPLQTNFNFNMIALVNGE-PKLLNLKTYL 782

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
            KE++  RREV+ R+++  ++  + R+ IL+GL IA  NI+ +I I+R+ + P   + ++ 
Sbjct: 783  KEFIEFRREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIAQELLE 842

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              F L++ Q  AIL+++L+ L  LE  +I SE + L  + E    +L++ ++Q   I  +
Sbjct: 843  KEFGLSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDIEYYRFVLSNREEQKRLIKED 902

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--RSLKSH 536
            I E+ +      + G  R T   VS+  +  + ++MIE+E + + ++++G+I   S KS+
Sbjct: 903  IDEIIK------NYGDERKTAI-VSKESEIDI-ESMIEEEEVVIFLTHKGFIARTSAKSY 954

Query: 537  SVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA------------- 577
                     +  +  +EGD +K  + A + D +L+ +  GK Y L A             
Sbjct: 955  KTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAYEIPKTEKSTRGQ 1014

Query: 578  --GNLLSGRGHGEAIQLLI---DLNHNQDI 602
               N L G    E +  +I   D +  +DI
Sbjct: 1015 SIRNFLPGMSGAEVVSRIIPVKDFSEKKDI 1044



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          E +  VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     +KK
Sbjct: 2  EKIIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKK 61

Query: 75 SARIVGEVIGK 85
          SARIVGE   K
Sbjct: 62 SARIVGECFVK 72


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 229/686 (33%), Positives = 387/686 (56%), Gaps = 28/686 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +A +A++
Sbjct: 138 EKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +R++  +E +  G   
Sbjct: 198 QKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTVIESLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLM 326
           IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  E +RIV+  K +  D + ++
Sbjct: 257 IVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELK-KDADANGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  +  NM V  + + PQ + L  +L  ++ H+REV+  R+ F ++  + R
Sbjct: 316 AYLFKKTDLQITYNFNM-VAIVNKTPQQLGLKAMLSAYIDHQREVVTHRTQFELEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+IL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            + ++ ELD L  + E + ++L+S K+    I  E+ E++E +        RR+   E  
Sbjct: 435 IHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGID-----RRSVIQEEV 489

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + ++  E + V +SN G+I+     S      +L +   KEGD +      +
Sbjct: 490 EEIKVNL-EVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKEGDYITRLFEVN 548

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T + +L+ ++ G+ + LP   +     +  G AI  +I +     IV+      +D   K
Sbjct: 549 TLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGK 608

Query: 614 LLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
            LV VS KG     +  E +   R G       + E   +++V+  +   + ++ +    
Sbjct: 609 SLVFVSRKGQVKRTDLKEYVTK-RSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMS 667

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + F+  ++  M R   GVR    +DG
Sbjct: 668 IRFNEQEVNAMGRVSGGVRGIQLRDG 693


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 217/598 (36%), Positives = 356/598 (59%), Gaps = 18/598 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFQDLPLEEVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L  +D++ V F   +++  +EPVV P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLAPIASELLHDIDKETVKFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI + A+  ++NP+ ++E L+  I GPDFPTGG IV+  + I ++Y  G+G   VR 
Sbjct: 185 HLGEIIDGAIMRMENPDCTVEDLMTVIKGPDFPTGG-IVQGIDGIKKAYETGKGKMVVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +EE+  G   IV+ EIPY+V K+ L++KI EL I +++  + ++RDE+    +RIV+
Sbjct: 244 RTSIEEIRGGRKQIVIAEIPYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVI 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  D D ++  +F  +D++  +  NM V    R PQ+M L  +L  ++ H++EV+ 
Sbjct: 304 ELK-KDADADSVLNYLFKNTDLQVSYNFNM-VAIHNRRPQLMGLRELLDAYIEHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +R+ F ++    R  I+ GL+ A   +DE+IA IR ++DK   K  ++++F+ TE Q +A
Sbjct: 362 KRTEFDLKKARDRKHIVDGLMKALSILDEVIAAIRASKDKKDAKANLIAKFAFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E  +L  + E   ++L+S K+ +  I  E+R++++ ++ + 
Sbjct: 422 IVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSSEKKLFTVIKKELRDIRKKYADN- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKE 547
               RRTT     +  K  L +AMI  E + V I+  G+I+  SL+S++  +   L  K+
Sbjct: 481 ----RRTTIEAEIQELKINL-EAMIPNEDVMVTITKDGYIKRTSLRSYTASNGRDLAIKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
            D L      +T   +LL +  G    LP   L  +  +  G+ +  L+ L  ++ I+
Sbjct: 536 SDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRWKDLGQHVSNLVTLERDEGII 593


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 383/716 (53%), Gaps = 48/716 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG IV     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   +++ KI +L+ +K++  + D++D  +    +R
Sbjct: 261 RASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q
Sbjct: 379 VVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + + 
Sbjct: 439 TQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546
                  RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    
Sbjct: 499 TP-----RRTVLLESADTPVAAI-PLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRA 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGK-----AYTLP-----AGNLLSGRGHGEAIQLLIDL 596
           + D ++ A+ A     +  +++ G+        LP     AG  L G   G  +   + L
Sbjct: 553 KHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVG---GAPVAEFVRL 609

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             ++ +V     D +   L + +          +  AN             E+++++   
Sbjct: 610 EGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPAN------------REELEVITLR 657

Query: 657 TGDHVAVVGENR---KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
            GD +    E R   + L+F  D    +  +   VR Q    GG++ V   K+ +G
Sbjct: 658 EGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGV---KLADG 710


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 232/697 (33%), Positives = 399/697 (57%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +     L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 2   ERVLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 62  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID+P  +++ L+  + GPDFPTGGII + +E I  +Y  G+G   +R 
Sbjct: 182 HLGEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGII-QGKEGIKTAYETGKGKIVIRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   IV+TEIPY+V K+ L++KI EL + K++  + D+RDE+      ++ 
Sbjct: 241 KATIEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  ++  +D++  +  NM V    R P+++ L  +L  ++ H++EV+  
Sbjct: 301 EVRKDGNAEGILNYLYKNTDLQITYSFNM-VAIHERRPKLLNLPQMLDAYIEHQKEVVAN 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS + +Q    R  I++GL+ A   +DEIIA IR ++DK   K  ++ ++  TE Q +AI
Sbjct: 360 RSRYELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLMDQYGFTEPQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   + Y ++ E + L  + E++ S+L S K+  + I  E+R++K+ ++    
Sbjct: 420 VTLQLYRLTNTDIYDLREEANALHDKIEQLTSILESEKKLLSVIKSELRKMKKTYADE-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RRTT  E  +  K  +   +I +E + V I+  G+I+  SL+S+S  +   +  KEG
Sbjct: 478 ---RRTTIEEEIKEIKIEM-NVVIPEEDVIVTITKDGYIKRTSLRSYSASNGQDIGMKEG 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D L      +TT  +LL +  G     P   L  +  +  G+ I  +I L+ ++ + +A 
Sbjct: 534 DRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRWKDLGQHISHIIPLDRDEQLTSAI 593

Query: 607 -VYD-STCKLLVVSSKGNAFIVEESEII--ANTRKGKTF--LKVSSEEKMKLVVKVTG-D 659
            + D     LL ++ +G    V+++ ++     R  K    +++  ++++  V +  G  
Sbjct: 594 PIADFENGYLLFITKQG---FVKKTHLVHYKAQRYSKPLVAMRLKEDDEVVNVYQTNGMG 650

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG 695
           H+ +V +    L+FS ++I E+  R  GV+    KDG
Sbjct: 651 HIFLVTQYGYGLLFSEEEIGEVGVRAAGVKGIHLKDG 687


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/521 (37%), Positives = 314/521 (60%), Gaps = 14/521 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P+  +++++ ++ GPD PTGG I+   + I ++YR GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRII-GLDGIADAYRTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE   L    E +  +++   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT     + +  A      +  +P  V++S  G +
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 342/587 (58%), Gaps = 34/587 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   +++ Y+ YA+S I  RA+P++RDG KPVHRR+++A  + G     ++ K
Sbjct: 14  DRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYASYDAGFRPDRSYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTEA
Sbjct: 74  SAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDGAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+ + +EP V P++ PNLL NG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A +  +++P    E ++   +E I GPDFPT  +IV S + I ++Y  GRG  
Sbjct: 194 NLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGS-QGIRDAYTTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R+   +EE  +G+  +VVTE+PYQV    LI+ IAE +   ++  +  I D+S++ V 
Sbjct: 253 RMRSVVDIEE-NKGTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGISRIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  + R     +++ +++  S ++T F  NM  +  G VP+ + LD +++ ++AH+
Sbjct: 312 MRIVVTLR-RDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVAHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR   N +  +  ++    + E
Sbjct: 370 IDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAARTGLMDLLEIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  E++ V + 
Sbjct: 430 IQADAILAMQLRRLSALERQKIVDELAEIEREIADLQDILAKPERQRAIVRDELKVVVDK 489

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT       AD     + +I +E + V I+  G+         RS +   
Sbjct: 490 YGDD-----RRTKIIA---ADGDVTDEDLIAREDVVVTITETGYAKRTKTDLYRSQRRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
             +     K+ D +K    + T D IL  +T G     KAY LP  N
Sbjct: 542 KGVQGAGLKQDDIVKHFFVSSTHDWILFFTTKGRVYRAKAYELPEAN 588


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 364/603 (60%), Gaps = 17/603 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
             R  T   E+      T  Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 --RLTTIQDEIEEIKIDT--QVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY 608
           F Y
Sbjct: 597 FPY 599


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 390/697 (55%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A++ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   ++KL+E++ GPDFPTGGII + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R +T  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSTLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
               D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 VIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ +T G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
                +  G    VE  E     T K K+  + K+  E +++  V  +  D V ++ +N 
Sbjct: 592 TYFAATRFGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K   +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKADDVLQSAFIC 688


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 364/603 (60%), Gaps = 17/603 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
             R  T   E+      T  Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 --RLTTIQDEIEEIKIDT--QVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY 608
           F Y
Sbjct: 598 FPY 600


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 390/697 (55%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L       
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAVK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ +T G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
                +  G    VE  E     T K K+  + K+  E +++  V  +  D V ++ +N 
Sbjct: 592 TYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVFLISQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 688


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 336/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    ++N     E + E ++E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGT-QGIEDTYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 KMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYVDHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + +
Sbjct: 371 LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDIDD 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+   KEI
Sbjct: 431 IQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDEL---KEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGDARRTR-----IVPADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 543 KGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELP 586


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 237/724 (32%), Positives = 398/724 (54%), Gaps = 41/724 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KSA+ V
Sbjct: 1   MSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+ E+
Sbjct: 121 AGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + LI +P+ S+EKL+E+I GPDFPTGG IV+  E I ++Y+ GRG   VRA+  +E
Sbjct: 181 LDALIYLIKHPDASLEKLMEFIPGPDFPTGG-IVQGVEGIKKAYQTGRGRIVVRAKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +     R+
Sbjct: 240 TLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRN 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +   ++  +   +D++  +  NM  +   R P  + L  IL  +LA ++EV+ RR+S+ 
Sbjct: 300 ANAAGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLAFQKEVVRRRTSYN 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +    RR+ I++GL+ A   +D++I  IR   N    K  ++ +++ ++ Q +AI+ L+L
Sbjct: 359 LDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFSDVQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
             L   +  +++ E   L++L+ E + I   L+  ++    +  E++ VK+ F       
Sbjct: 419 YRLTNTDVTELEDEHQHLNDLIDEYQLI---LSDDEELSKVVRREMQAVKKEFGNP---- 471

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFKEG 548
           RR     +V + +  T  +  +  E + V++S+ G+     IRS K+ S+D   L  +E 
Sbjct: 472 RRTQIEDQVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGL--RED 527

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D   +    +T   + + +  G     P   L   R    GE I   I L  N++I+ A 
Sbjct: 528 DYPLLVTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLTDNEEIIKAM 587

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           V+D        +  +S G        +    +R  K+   ++ + K      V+ D+   
Sbjct: 588 VFDKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRY-KSHASMAVKLKSADATVVSVDYYEP 646

Query: 664 VGENRKLLI---------FSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
             ENR LL          F +  +P    R  GVR  + KD   ++D++  K  + +  I
Sbjct: 647 TDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDTLADLVLVKDGQRVASI 706

Query: 713 DSAG 716
              G
Sbjct: 707 TQRG 710


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 200/481 (41%), Positives = 300/481 (62%), Gaps = 14/481 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+V
Sbjct: 16  TALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCARVV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RYTE R+  +
Sbjct: 76  GDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRLAGI 135

Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             + +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+IP HN+ E
Sbjct: 136 GDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPHNLGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG   VR     
Sbjct: 196 VVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDD-TGIREAYRTGRGIIPVRGVAKT 254

Query: 259 EEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           E +       R    IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDES  E +R+
Sbjct: 255 ETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREGIRV 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K  S  P  ++ +++  + ++T F   +  L +   P+ + L  +L+E+L  R   
Sbjct: 315 VIELKRES-QPQQVLAALYQQTALQTNFGAIILAL-VDNQPRQLSLKQVLQEFLRFRETT 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           L R+    +Q    R+ +++GLL+A  NID ++ I++N       K    +   +++ Q 
Sbjct: 373 LTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAELGISDPQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D+IL + LR L  LE  ++++E   L  + +++++LL++ ++    +  E+R +K+ F+ 
Sbjct: 433 DSILAMPLRRLTGLERQKLETEATELQTKIQQLETLLHNRQEFLKSLKKELRSLKKKFAD 492

Query: 489 S 489
           S
Sbjct: 493 S 493


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 352/632 (55%), Gaps = 39/632 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G        K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRGHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N     E ++  ++E + GPDFPT G+IV S + I ++Y+ GRG  
Sbjct: 194 NLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGS-QGIEDTYKTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 KMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVEHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+ + 
Sbjct: 431 IQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVRDELKEIADK 490

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 491 YGDD-----RRTRIVP---ADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +       T D IL  +T G     KAY LP     S    G+ +  
Sbjct: 543 KGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEA---SRTARGQHVAN 599

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
           L+    N+ I        Y+    L++ +  G
Sbjct: 600 LLAFQPNERIAQVIQIKSYEDAPYLVLATRNG 631


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 316/528 (59%), Gaps = 27/528 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 21  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 81  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 140

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +A + +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN
Sbjct: 141 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+ + + I ++YR G+G   VR  
Sbjct: 201 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIPT-QGIEDAYRHGKGIISVRGV 259

Query: 256 WCVEEVGRGS------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
             +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES    
Sbjct: 260 VRIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSG 319

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++   +L E ++  + ++  F   M  L +   P+ + L  +L+E+L  R
Sbjct: 320 MRVVIELKRDAVAKTVLRE-LYKKTALQQNFGAIMLAL-VDNQPRQLSLRQLLEEFLKFR 377

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
              L R+ ++ ++    R+ +L+GLLIA  N+D II I+RN       K       +L+E
Sbjct: 378 EHTLTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQELNLSE 437

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  
Sbjct: 438 AQANGILAMPMRRLTGLERQKLQAEYDELQGRINELENLLNNRPEFLKVLKKELRSLKRK 497

Query: 486 FSKSTDLGRRRTTFCEV------SRADKATLQQAMIEKEPITVVISNR 527
           +        RRT   +       S+A +   +Q+  + +  T  ISNR
Sbjct: 498 YGDE-----RRTRIVQPTAQKSQSKATQTAKKQSSDQNK--TTSISNR 538


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 227/692 (32%), Positives = 381/692 (55%), Gaps = 42/692 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + V+ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++ M + G     +
Sbjct: 7   VTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTMYDGGYRPERS 66

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA RY
Sbjct: 67  FNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSPGNDGAAAPRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+ +  EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 127 TETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSAGIAVGMATNI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+ +     + NP++  E LLE +I    GPDFP+G  I+   + I ++YR GR
Sbjct: 187 PPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQIL-GHKGIEQAYRTGR 245

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G    RA   VEE+     C+VVTE+PYQV    L  KIA+L+   ++  + D+RDE++ 
Sbjct: 246 GSITQRAVVSVEEI-HNRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGIADMRDETSG 304

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+V+  K R   P +++ +++  + ++  F  NM  L  G VP+ + LD  +  W+
Sbjct: 305 RTGQRLVIVLK-RDAVPKVVLNNLYKHTQLQENFSANMLALVDG-VPRTLSLDAFVHHWV 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
           +H+ +V+ RR+ +R++       IL GLL A   +DE+IA+IR     ++ +  ++    
Sbjct: 363 SHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARNGLMELLG 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           + E Q  AILN++LR L  LE  +I+   +EL  L+AE E+I   + S  +Q   I+ E+
Sbjct: 423 IDEAQAQAILNMQLRRLAALERQKIQDRHAELQRLIAEYEEI---IASEARQRGIISEEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+ E +        RRT        D +   + +I ++ + V I+  G+++  ++    
Sbjct: 480 AEIVERYGDD-----RRTEVLYGFDGDVSM--EDLIPQQQVVVTITRDGYVKRTRADEYR 532

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589
                   +     +  D ++     +T + IL  +T G+ Y + A   + +GR   G+ 
Sbjct: 533 AQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTTLGRVYRVKAYEFVEAGRDAKGQH 592

Query: 590 IQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +  L++    + I       S      LV++++ N  + +      +T +    + ++  
Sbjct: 593 VANLMEFQPEERIAKVMELHSYQDAPYLVLATR-NGLVKKSRLTDYDTNRSAGVIAINLR 651

Query: 648 EKMKLVVKV---TGDHVAVVGENRKLLIFSID 676
           +  +LV  +   T D + ++  + + L F+ D
Sbjct: 652 DDDELVSAMLVDTDDDIMLISRHGQSLRFTAD 683


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 243/744 (32%), Positives = 402/744 (54%), Gaps = 39/744 (5%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+GE +GK HPH
Sbjct: 14  YLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIGETMGKYHPH 73

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++AE +++ +++
Sbjct: 74  GDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMAEEMVRDIEK 133

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++  HN+ EI +A +  ID+
Sbjct: 134 ETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEISDAIMYGIDH 193

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+ S+E LL+++ GPDFP GG+I  + + ++  YR G G    +     EE  +    I+
Sbjct: 194 PDCSVEDLLKFVQGPDFPGGGMIYRNSD-LLNIYRTGHGKVFCQGEIDDEEKKK----II 248

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328
           +  +PY V K+  I+ +AE +    I  + DIRDES  + +R+V+  KN      L +  
Sbjct: 249 IKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDD-SKGLTINQ 307

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + +ET   +N N++ +   P+VM LD ++  ++  R E++ +RS F +  +  R  
Sbjct: 308 LYEHTPLETTIGVN-NLVLLNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEVNKLMDREH 366

Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL GL+IA  NID +I IIR   N D  K  ++ + SL+E Q  AIL++RL+ L  LE  
Sbjct: 367 ILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQLSLSEKQALAILDMRLQRLTGLEIK 426

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  EL ++    E+++ ++N+  ++ + +  E  E+K+ F        RRT    ++R 
Sbjct: 427 KINDELISIKENIERLNEIINNESKRRDVLKQETLEIKKQFGDV-----RRTKV--LNRD 479

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-------SALHFKEGDSLKIALHAH 558
             A   + +I  E   +++S  G ++ + S   ++       +    ++ D+++  L   
Sbjct: 480 INARNDEDIIPNEESIMILSENGLLKRVSSEEYNVQKRGGKGTITATRKEDTVRSILSCM 539

Query: 559 TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           + D I   +  G     KAYT+   +  S    G      + +N N+ I       ++ K
Sbjct: 540 SHDMIYFFTNTGRVLRTKAYTIEKKSRTS---LGSVGGTFLKMNENEKIKQIMKSPASPK 596

Query: 614 --LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             L++++ KG        EI+     G   +K+  ++++  V+ +     + V   N K 
Sbjct: 597 NFLIIITKKGFIKRTPVKEILDMRESGLKIIKLDDQDEVVSVMDLEKPSKIFVAASNNKA 656

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            +F  D++    R  +GV+  S +  G   +  F + +  T +        +        
Sbjct: 657 AVFLSDEVSSTGRASRGVK--SMRLNGAEVINSFLVDDNDTVMSITENGLGKRTKITDFS 714

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
           +  RG  G+L+ K   R+G  +++
Sbjct: 715 IHHRGSSGNLIFKESERTGSLVTA 738


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 229/686 (33%), Positives = 387/686 (56%), Gaps = 28/686 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +A +A++
Sbjct: 138 EKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +R++  +E +  G   
Sbjct: 198 QKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTDIESLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLM 326
           IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  E +RIV+  K +  D + ++
Sbjct: 257 IVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELK-KDADANGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  +  NM V  + + PQ + L  +L  ++ H+REV+  R+ F ++  + R
Sbjct: 316 AYLFKKTDLQITYNFNM-VAIVNKTPQQLGLKAMLSAYIHHQREVVTHRTQFELEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+IL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            + ++ ELD L  + E + ++L+S K+    I  E+ E++E +        RR+   E  
Sbjct: 435 IHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGID-----RRSVIQEEV 489

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + ++  E + V +SN G+I+     S      +L +   KEGD +      +
Sbjct: 490 EEIKVNL-EVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKEGDYITRLFEVN 548

Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T + +L+ ++ G+ + LP   +     +  G AI  +I +     IV+      +D   K
Sbjct: 549 TLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGK 608

Query: 614 LLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
            LV VS KG     +  E +   R G       + E   +++V+  +   + ++ +    
Sbjct: 609 SLVFVSRKGQVKRTDLKEYVTK-RSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMS 667

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + F+  ++  M R   GVR    +DG
Sbjct: 668 IRFNEQEVNAMGRVSGGVRGIQLRDG 693


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 339/602 (56%), Gaps = 33/602 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +    +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G 
Sbjct: 17  TGGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGY 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D A
Sbjct: 77  RPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPA 136

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVG
Sbjct: 137 AAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVG 196

Query: 187 MATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           MAT IP HN++EI  A    +++PE     ++E LL  + GPDFPT G+IV  +  I ++
Sbjct: 197 MATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIV-GQAGIQDA 255

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIR
Sbjct: 256 YRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIREGKLGGIADIR 315

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES+    +R+VL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   
Sbjct: 316 DESSGRTGMRLVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQF 373

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           ++ ++ H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     D  +  +
Sbjct: 374 IRSYVEHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGL 433

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q  +I  
Sbjct: 434 IRLLDIDEIQATAILDMQLRRLAALERQRILDDLVKLELEIADFKDILAKPERQ-RRIVS 492

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E  E+ EI +K  D   RRT        D     + +I +E + V I+  G+        
Sbjct: 493 E--ELGEIVAKWGD--DRRTQIIPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDA 545

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR 584
            RS +     +S    ++ D +       T D IL  +  G     KAY LP  + ++  
Sbjct: 546 YRSQRRGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKG 605

Query: 585 GH 586
            H
Sbjct: 606 QH 607


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 253/782 (32%), Positives = 414/782 (52%), Gaps = 55/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP    E ++E  +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-SRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  QI 
Sbjct: 417 LKELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQ-RQIV 475

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            +  E+ EI  K  D   RRT   E+  A      + +I +E + V I++ G+ +  K  
Sbjct: 476 HD--ELAEIVDKYGD--ERRT---EIIPATGDVTDEDLIARENVVVTITSTGYAKRTKVD 528

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           S          +     K+ D +K      T D IL  +  G+ Y L A  L  G     
Sbjct: 529 SYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693
            ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +   
Sbjct: 646 AINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702

Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   ++   +        + ++G    R+  +     G RGG+G +  K  P+ GK +
Sbjct: 703 --GDDQLLSMSVVHDGEFLLVATSGGYGKRTAIEEYTTQG-RGGLGVMTFKYTPKRGKLI 759

Query: 752 SS 753
            +
Sbjct: 760 GA 761


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 342/549 (62%), Gaps = 32/549 (5%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RY
Sbjct: 12  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 71

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 72  TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 131

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +
Sbjct: 132 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVK 190

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VRA+  +E+       I++ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES  E +R
Sbjct: 191 VRAKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIR 249

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ 
Sbjct: 250 VVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKT 307

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q
Sbjct: 308 VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQ 367

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F 
Sbjct: 368 ANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF- 426

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
              D+ R      ++         + +I  E + V I++RG+I+ + S   +        
Sbjct: 427 ---DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKG 479

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594
             A+   + D ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI
Sbjct: 480 KLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTVKGKAVVNLI 536

Query: 595 DLNHNQDIV 603
           +L   + I+
Sbjct: 537 NLQAEEKIM 545


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 225/643 (34%), Positives = 362/643 (56%), Gaps = 44/643 (6%)

Query: 15  ENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           EN K +S+     ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      +
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGGII    E + E++  GRG   +
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIY-GYEGVKEAFLTGRGKILL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           R++   E++ +   CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  + +RI
Sbjct: 242 RSKVHFEKI-KFRTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V F K ++++  LL+ ++F  + +ET F +N   L  G+ P  + L  ++K ++ HR  V
Sbjct: 301 VFFLK-KNVNKQLLLNNLFKETYLETSFSVNNIALVNGK-PTKLNLKYLIKHFVNHRHNV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + RR+ + +     R  I++G  +   +++ +I +I   ++ +  K  +++++ L+E QV
Sbjct: 359 IIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQV 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +  
Sbjct: 419 QSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRILNDKFLQKKIIKKELKIIKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS--------- 537
           S     RRT        D   L+ ++   + + +  S  G+++   L  +          
Sbjct: 479 S-----RRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKKIGVGGI 527

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
           V++ A   K+ D +K  + A+T   +L  +  GK + L    +  G     G AIQ LI 
Sbjct: 528 VNMGAYKLKK-DFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEGYKTSKGRAIQNLIK 586

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           ++           D  C  +++    N + +    +I  T+ G
Sbjct: 587 IDKK---------DKICSSILIKDFFNKYYINNHYVIMITKSG 620


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 226/701 (32%), Positives = 396/701 (56%), Gaps = 30/701 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG II +  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES    +RI + 
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  S D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 302 LKKDS-DEQTILNYLYKYTDLQINYNFNMVAID-NFTPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KS 489
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F   + 
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNPRL 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           ++L  +     E    D A+L    I +E   V ++  G+I+     S + S L     +
Sbjct: 480 SELQDQ----AETIEIDTASL----IVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L    +A TT  +LL +  G     P   L   R    GE + Q L++ + +++I+
Sbjct: 532 DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEII 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VT 657
            A + ++        V+  G    VE  E     T K K+  + K+   E + + V  V 
Sbjct: 592 FAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVV 651

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            D + ++ E    L F+I+++P + ++  GV+  + KDG +
Sbjct: 652 LDDIMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDGDV 692


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 231/668 (34%), Positives = 365/668 (54%), Gaps = 35/668 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 14  DRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 74  SARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  ++E + GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 194 NLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-QGIHDAYTTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--D 308
           R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + DI DES++   
Sbjct: 253 RMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGISDIHDESSDRAG 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++AH+
Sbjct: 313 MRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRLDQMIRLYVAHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E
Sbjct: 371 VEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLTVDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  E+   KEI
Sbjct: 431 IQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRRIVRDEL---KEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGD--DRRTRIIA---ADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +     + T D +L  +T G     KAY LP  +  + RG   A  L
Sbjct: 543 KGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEAS-RTARGQHVANLL 601

Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
               +   Q ++    Y+    L++ +  G     + ++  +N   G   + +  E+++ 
Sbjct: 602 AFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELV 661

Query: 652 LVVKVTGD 659
             V  + D
Sbjct: 662 GAVLCSSD 669


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 235/695 (33%), Positives = 376/695 (54%), Gaps = 48/695 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++  Y+ YA+S I  RA+PD+RDG KPVH R++++M +       ++ K AR+VG+
Sbjct: 21  LQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSMFDSRFLPERSYNKCARVVGD 80

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE R+T +A 
Sbjct: 81  VMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQGNDPAAAMRYTECRLTPLAM 140

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L  ++ED VDFRD Y+    EP V PS+ PNLL NG+SGIAVGMAT+IP HN++E+ E
Sbjct: 141 RMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSSGIAVGMATNIPPHNLREVAE 200

Query: 202 AALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
             +  +DNPE S E+ LE +I    GPDFPT G I+ + + I ++YR GRG  ++RA   
Sbjct: 201 GVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGT-QGIEDAYRTGRGSVKMRAVVE 259

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFP 315
           ++E  +G   +VV+E+PYQV    L+E IA L+  ++I  + +I DES     +RIV+  
Sbjct: 260 MDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGISNIADESNRRSGMRIVVTV 319

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R     +++ +++  + ++  F +NM  L  G VP+ + LD +++ ++ H+ EV+ RR
Sbjct: 320 K-RDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDG-VPRTLRLDQMIRHYVKHQIEVIVRR 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + FR++  + R  + +GL+ A   +D +IA+IR  D  +     ++   S+ E Q +AIL
Sbjct: 378 TKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARSGLMELLSVDEVQSNAIL 437

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE  +I  +L  +  +   +  +L   ++Q   +  E+    EI  K  D 
Sbjct: 438 EMQLRRLAALERQKIIDQLAEIELQIADLKDILAKPERQRAIVRGEL---LEIVDKHGD- 493

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
             RRT        D     + +I  E + V I+  G+         R+ K     +    
Sbjct: 494 -DRRTKIVPF---DGDVSMEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQ 549

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K+ D ++      T D IL  +  G+ Y   A +L   S    G+ +  L+    +++I
Sbjct: 550 LKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYDLPEASRNARGQHVANLLAFQPDEEI 609

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y++   L++ +  G     + S+  +N   G   + +  E+++   V     
Sbjct: 610 AQVIQIKNYEAAPYLVLATRNGLVKKSKLSDFDSNRSGGLIGINLREEDELVGAV----- 664

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
              + GE   LL+ S D       G+ +R  S  D
Sbjct: 665 ---LTGEGDDLLLVSKD-------GQSIRFHSSDD 689


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 247/773 (31%), Positives = 405/773 (52%), Gaps = 60/773 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+V
Sbjct: 16  TALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCARVV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+  +
Sbjct: 76  GDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAPI 135

Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             E +L  + E  VDF + ++    EPVV P++ P LL NG SGIAVGMAT+IP HN+ E
Sbjct: 136 GQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +  +ALID P++  E+L E I GPDFPTGG I+++ E I E+YR G+G   V+    V
Sbjct: 196 IVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDT-EGIKEAYRTGKGIIPVQGVTHV 254

Query: 259 EEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           E +       +    IVVTE+PYQV KS  IEK+A+L+   R+  + DIRDES      V
Sbjct: 255 ETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQGMRV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R      ++E ++  + +++ F + +  L   + P  + L  +L+E+L  R + L
Sbjct: 315 VIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNK-PCQLSLRELLEEFLNFREQTL 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            R+    +     R+ +L+GLLIA  N+D++I I+RN       K       +++E Q D
Sbjct: 374 TRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEELTISEEQAD 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--- 486
           +IL + +R L  LE+ ++++E ++L     ++  LLN   +    +  ++R +K  F   
Sbjct: 434 SILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDLRALKRKFGDE 493

Query: 487 ------------SKSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITV 522
                       SKS +     +T  + S+             D ++L     +  P   
Sbjct: 494 RRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTTPSKSSEPKAKDSSSLSLFTPQPPPKDA 553

Query: 523 V--ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPAGN 579
           V  I+ +G+I    +   + S    K+G    I        D +++++  GKAY +    
Sbjct: 554 VLTITEQGYIYWQSAAEFN-SISSIKKGTDFPIYTQRIQQQDSLIVITDQGKAYPVSGSE 612

Query: 580 LLSGRGHGEAIQLLID---LNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633
           +        ++  L+      ++Q I + F++    +  +L++++ +G    +  SE+  
Sbjct: 613 IPPQESQPCSLLNLLPNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELEQ 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN--RKLLIFSID-QIPEMSR----GKG 686
              +G + +K+  ++++  +   +  H   +  N  R L + + D QIP M R     + 
Sbjct: 673 IGNRGLSLIKLKDDDRLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQA 732

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +RL+  ++  I   +  KI + L  I  +G       N L   + K G +G++
Sbjct: 733 LRLRYGEN--IVGCVTPKIDDNLLLITQSGYGKRIPVNSL--RITKLGEIGTM 781


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 218/707 (30%), Positives = 403/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK------------TFLKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR  +            + +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
 gi|332204860|gb|EGJ18925.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47901]
          Length = 811

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 392/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               V+  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 334/631 (52%), Gaps = 55/631 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +M E G     ++ KS
Sbjct: 20  DVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERSYVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQGNFG++DGD  AA RYTE R
Sbjct: 80  ARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+D Y+ ++ EPVV PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 140 MAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A L +ID P+++ ++LL+ + GPDFPTGG I+  R    ++   GRG   +R  
Sbjct: 200 LGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEII-GRAGPRQALLTGRGSVIMRGL 258

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+  G   I++T IPYQV KS L+E IAE++  KRI  + DIRDES  D   ++  
Sbjct: 259 ATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEGVSDIRDESNRDGMRIVVE 318

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F +NM  L+ GR P  M L  ++  ++  R EV+ RR
Sbjct: 319 LKRDASGEVILNQLYRFTALQSSFGVNMLALNRGR-PSQMGLRELIDIFVKFREEVVVRR 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------------- 414
           + F +     R  +L GL IA  NIDE I IIR+   P                      
Sbjct: 378 TKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKAWPAGDMLPLVE 437

Query: 415 ----PVMVSR----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               P  V        LT+ Q  AIL L L  L  L   +I +E  +L    E I   L+
Sbjct: 438 LIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAASL---AEAIKGFLD 494

Query: 467 SGKQQWNQIAC---EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
               + N +A    E+ EV+E F+    + RR    C++   D     + +I +E + + 
Sbjct: 495 LLSDRANIMAVVREELVEVREKFA----IPRR----CQIVDGDADVEDEDLIVREDMVIT 546

Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G++        R+        S +  K  D++     A T   +L  ++ GK Y +
Sbjct: 547 VTLGGYVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSGGKVYKM 606

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
               L  G     G+A   L+ +   + I +
Sbjct: 607 KVWRLPQGVANSRGKAFVNLLPIEPGETITS 637


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 217/638 (34%), Positives = 345/638 (54%), Gaps = 60/638 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ +++   + + +L Y++S I  RA+PD RDG KP  RRI+  M+++G+       K
Sbjct: 8   EKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLPNRKHIK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+ +G  HPHGDQ++Y +LV +AQP+  R  L+ GQGNFG+++GD  A+ RYTEA
Sbjct: 68  CAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPASMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +   ++  +D++ VDF  TY+E   EPVV P+ FPNLL NG +GIAVGMAT+IP H
Sbjct: 128 RLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E      A IDNP I++++L++Y+ GPDFPT G I++    I   +  GRG  RVR 
Sbjct: 188 NLSECINGICAQIDNPNITLDELMQYVKGPDFPT-GCILQGSAGIRSYFETGRGSVRVRG 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   EE   G   I+VTEIPY V ++ L+++IAEL   K +  + D+RDES E+ R+V+ 
Sbjct: 247 RASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESDENTRVVID 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R  +P +++ ++F  + +E+ F +NM  +  GR P+++ L   +  ++ HRRE++ R
Sbjct: 307 LK-RDGNPKVILNNLFKHTALESSFSVNMLAIDHGR-PRLLGLKDAIACYIEHRREIILR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMV------------ 418
           R+ F + A +   E L+G LIA  N+D+ I IIR+    +D    +M             
Sbjct: 365 RTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAVEQLG 424

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       ++  TE QV  IL+LRL  L  LE   IK E D LL     +  +L  
Sbjct: 425 VLIRSEARVVDGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDLMDILAK 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    I  E+R +++ +        RRT   E+         + +I  E + V +++ 
Sbjct: 485 EHRVLTIIKDELRAIQDKYGSE-----RRT---EIVPEQGEIAIEDLIANEGVIVTLTHN 536

Query: 528 GWI--------RSLKSHSVDLSALHFKEG------DSLKIALHAHTTDRILLLSTDGKAY 573
           G+I        R+ +     +  +  +EG      D ++    A T D ++  + +G+ Y
Sbjct: 537 GFIKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCY 596

Query: 574 T-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                 +P G   S    G +I  +++L  ++ I    
Sbjct: 597 VERVFEIPEGTRTS---KGRSIANVLELRQDEKIAATI 631


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 231/668 (34%), Positives = 365/668 (54%), Gaps = 35/668 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 14  DRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 74  SARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  ++E + GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 194 NLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-QGIHDAYTTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--D 308
           R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + DI DES++   
Sbjct: 253 RMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGISDIHDESSDRAG 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++AH+
Sbjct: 313 MRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRLDQMIRLYVAHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E
Sbjct: 371 VEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLTVDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  E+   KEI
Sbjct: 431 IQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRRIVRDEL---KEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGD--DRRTRIIA---ADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +     + T D +L  +T G     KAY LP  +  + RG   A  L
Sbjct: 543 KGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEAS-RTARGQHVANLL 601

Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
               +   Q ++    Y+    L++ +  G     + ++  +N   G   + +  E+++ 
Sbjct: 602 AFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELV 661

Query: 652 LVVKVTGD 659
             V  + D
Sbjct: 662 GAVLCSSD 669


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 220/698 (31%), Positives = 390/698 (55%), Gaps = 31/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIQKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVSILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SHFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++    D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 532 DDDRLIFVQVAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T K K+  + K+  E +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
             D V +V  N   L F+I+++P + ++  GV+  + K
Sbjct: 652 KLDDVLLVSRNGYALRFNIEEVPVVGAKAAGVKAMNLK 689


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  363 bits (931), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 232/668 (34%), Positives = 363/668 (54%), Gaps = 35/668 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 14  DRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 74  SARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  ++E I GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 194 NLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QGIQDAYTTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + DI DES++ V 
Sbjct: 253 RMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGISDIHDESSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ +  H+
Sbjct: 313 MRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRLDQMIRLYTTHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARAGLMELLDVDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q    A    E+KEI
Sbjct: 431 IQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQR---AIVRDELKEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKYGDDRRTR-----IIAADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +       T D +L  +T G     KAY LP  +  + RG   A  L
Sbjct: 543 KGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEAS-RTARGQHVANLL 601

Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
               +   Q ++    Y+    L++ +  G     + ++  +N   G   + +  E+++ 
Sbjct: 602 AFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELV 661

Query: 652 LVVKVTGD 659
             V  + D
Sbjct: 662 GAVLCSAD 669


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 309/522 (59%), Gaps = 14/522 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V +   +   +L YA S I  RA+PD RDG KPV RRI+ +M+E  +       
Sbjct: 15  EERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAENNIRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VGEV+GK HPHGD ++YD+LVR AQP+  R PLI G GNFG++D D  AA RYTE
Sbjct: 75  KSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-DGPAAMRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   A  +  G+DE+ VDF+  Y+ ++ EP V P+ FPNLL NG +GIAVGMAT++  
Sbjct: 134 CRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIAVGMATNMAP 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A   LI +P+  ++ L+ ++ GPD PTGG IV   E I ++Y  GRG F++R
Sbjct: 194 HNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIV-GLEGIKDAYATGRGSFKMR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A   +E V      IVVTE+PY V   ++IEKI  L+ AK++  + D++D  + +   R+
Sbjct: 253 ATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDLTDRSHGTRL 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN    P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L  +L HR +V
Sbjct: 313 VIEVKN-GFVPEALLEQLYKLTPLEDSFSINAVCLVDGQ-PRTLGLRELLDVYLEHRYDV 370

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RRS FR +    R+ I+ GLLIA L+IDE+I IIR+ D     +  ++  + L+E Q 
Sbjct: 371 TRRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTRLIDIYDLSEVQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL++ LR L K  + ++++E   L  E EK+ ++L         ++ E+ +V + +  
Sbjct: 431 NYILDMPLRRLTKFSKLELETEKAELEREIEKLTAILEDEALLRKIVSEELADVAKTYGT 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                 RRT   E S A K       +  +P  V++S+ G +
Sbjct: 491 P-----RRTVLLESSGAAKTAAVPLEVTDDPCWVLMSSAGLL 527


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 595 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 198/499 (39%), Positives = 305/499 (61%), Gaps = 14/499 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MG
Sbjct: 9   VSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMG 68

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D 
Sbjct: 69  LRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DG 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+GIAV
Sbjct: 128 PAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD-- 303
           GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+ D  
Sbjct: 247 GRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLT 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +    +R+V+  KN   +P+ ++ +++  + +E  F +N   L  G+ PQ + L  +++ 
Sbjct: 307 DRTNGLRLVIEIKN-GFNPEAVLAALYKHTPLEDSFGINNVALVDGQ-PQTLGLLDLMRV 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++ HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D   + +  +   
Sbjct: 365 YIDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKLKVV 424

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ Q + IL LRLR L K    ++++E D L  E  ++  +L+S       ++ E+ 
Sbjct: 425 FDLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILSSDAALRELVSEELA 484

Query: 481 EVKEIFSKSTDLGRRRTTF 499
           EV E +   TD   RRT  
Sbjct: 485 EVAERY--GTD---RRTQL 498


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 223/710 (31%), Positives = 398/710 (56%), Gaps = 34/710 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAEDVRIVLF 314
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  +  ++RDES  D   +  
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  
Sbjct: 300 ELKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILA 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI
Sbjct: 359 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 419 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 476

Query: 492 LGRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
              R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     
Sbjct: 477 ---RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK 529

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDI 602
           ++ D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I
Sbjct: 530 RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEI 589

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVK 655
           +   V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  
Sbjct: 590 LYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAP 649

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
           +  D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 IKLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 699


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  363 bits (931), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 225/643 (34%), Positives = 362/643 (56%), Gaps = 44/643 (6%)

Query: 15  ENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           EN K +S+     ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      +
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGGII    E + E++  GRG   +
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIY-GYEGVKEAFLTGRGKILL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           R++   E++ +   CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  + +RI
Sbjct: 242 RSKVHFEKI-KFRTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V F K ++++  LL+ ++F  + +ET F +N   L  G+ P  + L  ++K ++ HR  V
Sbjct: 301 VFFLK-KNVNKQLLLNNLFKETYLETSFSVNNIALVNGK-PTKLNLKYLIKHFVNHRHNV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + RR+ + +     R  I++G  +   +++ +I +I   ++ +  K  +++++ L+E QV
Sbjct: 359 IIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQV 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +  
Sbjct: 419 QSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRILNDKFLQKKIIKKELKIIKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS--------- 537
           S     RRT        D   L+ ++   + + +  S  G+++   L  +          
Sbjct: 479 S-----RRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKNIGVGGI 527

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
           V++ A   K+ D +K  L A+T   +L  +  GK + L    +  +     G AIQ LI 
Sbjct: 528 VNMGAYKLKK-DFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEVYKTSKGRAIQNLIK 586

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           ++           D  C  +++    N + +    +I  T+ G
Sbjct: 587 IDKK---------DKICSSILIKDFFNKYYINNHYVIMITKSG 620


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  363 bits (931), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 230/658 (34%), Positives = 363/658 (55%), Gaps = 33/658 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM + G      + K
Sbjct: 12  DRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQDQGFRPDRGYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEA
Sbjct: 72  SARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +++ +DE+ VDF   Y+ +  EP V P++ PNLL NG+ GIAVGMAT+IP H
Sbjct: 132 RLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGIAVGMATNIPPH 191

Query: 195 NVQEICEA---ALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   AL   D  E S +E + E + GPDFPT G+IV + + + ++Y  GRG  
Sbjct: 192 NLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGT-DGVHDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  +G   +V+TE+PYQV    +I  IAE +   +I  +  I DE+++ + 
Sbjct: 251 RMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGISAIDDETSDRIG 310

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K  ++   +++ +++  S ++T F  NM  +  G VP+ + LD IL+ ++AH+
Sbjct: 311 MRIVVTLKRDAV-ARVVLNNLYKHSQLQTNFGANMLAIVDG-VPRTLRLDQILRLYIAHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 369 IEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARAGLMELLDVDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +   +E I    +   +   Q A    E+KEI
Sbjct: 429 IQADAILAMQLRRLAALERQKIIDELAEI---EEAIADYQDILARPERQRAIVRDELKEI 485

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D  R R    E    D     + +I +E + V I+  G+         RS K   
Sbjct: 486 VDRHGDERRTRIIAAEGEVRD-----EDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D +       T D IL  +T G+ Y + A  L   S    G+ +  L+ 
Sbjct: 541 KGVQGATLKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPETSRAARGQHVANLLA 600

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L  ++ I        Y+ +  L++ + +G     + +E  +N   G   + +  E+++
Sbjct: 601 LQTDEKIAQVIHLQTYEDSPYLVLATKRGLTKKSKLTEFDSNRSGGLIAVNLRDEDEL 658


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 217/707 (30%), Positives = 402/707 (56%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK------------TFLKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR  +            + +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 209/640 (32%), Positives = 370/640 (57%), Gaps = 22/640 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G     AF+
Sbjct: 5   QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++Q AE +LQ +D++ VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L  I +P+ S+EKL+E++ GPDFPTGG IV+ R+ + ++Y+ GRG   VR
Sbjct: 185 HNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGG-IVQGRDGLKQAYKTGRGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +E++      I +TEIPY+V K++L++KI E+ + K+I  + ++RDES  +   + 
Sbjct: 244 SRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGLSIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D   ++  +   +D++  +  NM  ++  R P+ M L  I++ ++  ++EV+ 
Sbjct: 304 IELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLR-PERMGLKPIIQAYVDFQKEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +R+ F +Q  + R+ I+ GL+ A   +D++I  IR ++DK   K  +V RF  +E Q ++
Sbjct: 363 KRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVERFDFSEKQAES 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  ++K+E   L     + + +LN   +    ++ E+R+VK+ ++ + 
Sbjct: 423 IVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQILNDPAKLSRVLSAELRKVKKQYA-TP 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548
            L   +    E+ + D+       + +E + V++S  G+++  SL+S+         K+G
Sbjct: 482 RLSEIQDEIEEI-KIDRTV----TVPEEQVMVLVSQAGYLKRSSLRSYKASADEDGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D         T D +L+ +  G     P   +   R    GE +   I L  ++ I+ A+
Sbjct: 537 DQPVFKHELSTLDHLLMFTNKGNLIYRPVYEITEARWKDTGEHVSQTIGLADDEIILKAY 596

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
               +      L+ +  G  +I + +  + + + G+T+ K
Sbjct: 597 DVKNFKQPINFLIATDDG--YIKQTA--LQDLKPGRTYRK 632


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 209/618 (33%), Positives = 366/618 (59%), Gaps = 20/618 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI+ + +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGIL-QGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R PQ + L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR ++DK   K  +V +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVIQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++  SL+S+       +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L  L  +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKG 621
            Y   D     +++S  G
Sbjct: 598 AYKEIDPLKNFVLISKNG 615


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 483 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 535 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 594

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 595 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 655 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 698

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 699 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 728


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 221/708 (31%), Positives = 396/708 (55%), Gaps = 33/708 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
            R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     ++
Sbjct: 475 -RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRD 529

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+ 
Sbjct: 530 DDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILY 589

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVT 657
             V   +D        +  G    VE  E     T + K+  + K+  + +++  V  + 
Sbjct: 590 VEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIK 649

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
            D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 LDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 697


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 217/707 (30%), Positives = 402/707 (56%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR ++DK   K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK------------TFLKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR  +            + +K+ +EE   + 
Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  362 bits (930), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 299/490 (61%), Gaps = 14/490 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MGL       K
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+GIAVGMAT++  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+      LI +P+ ++++++++I GPD P+GG IV     I ++Y  GRG F+ RA
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKDAYESGRGTFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+ D  +    +R+V
Sbjct: 256 KVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLV 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P  ++ S++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR  V+
Sbjct: 316 IEIKN-GFNPQAVLASLYKHTPLEDSFGINNVALVNGQ-PQTLGLLDLLRVYIDHRLSVV 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D   + +  +++ F LTE Q +
Sbjct: 374 RRRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMAVFDLTEVQAN 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L  E  +++ +L S       ++ E+ EV E +   
Sbjct: 434 YILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSDELAEVAEKYGND 493

Query: 490 TDLGRRRTTF 499
                RRT  
Sbjct: 494 -----RRTVL 498


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/461 (42%), Positives = 284/461 (61%), Gaps = 11/461 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M EMGL    ++
Sbjct: 16  IKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMGEMGLSPDKSY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  + + + E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMATNMV 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P  S E L+ Y+ GPD P GGII+  RE I E+Y  GRG F  
Sbjct: 195 THNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGGIIM-GREGIKEAYTSGRGSFLT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           RA   +E V      IVVTE+P+ V   +++E+I+E I  K++  +    D+ D      
Sbjct: 254 RAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAIDLTDRH-NGT 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K    DP  ++  +F  + +E  F +N   L  GR P  M +  +L  W+ HRR
Sbjct: 313 RLVIEIKT-GFDPRAVLGQLFKYTPLEDSFTINNVALVNGR-PHTMGIKELLSVWIEHRR 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS +R +  + R+ ++ GLL+A ++IDE+I +IR   + D  K  +++ F L + 
Sbjct: 371 TVVTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLMAVFDLDQI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           Q   IL+LRLR L K+   +++SE D+L     ++D +L+S
Sbjct: 431 QAQYILDLRLRRLTKMSRIELESERDDLQRLIAQLDQILSS 471


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/499 (40%), Positives = 307/499 (61%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S  KLLE I GPDFPTGG ++ S   + ++Y +GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLS-SGLRDTYLVGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G+G      +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  ++  +   + +++ F   +  L  G+ P+ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQ-PRQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            +R   L RR+S  ++  + R+E++ GL+ A  N+  +I +I+        +  ++ R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ EL+ L AE+E++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELEELQAERERLRLLLDNRDQLLDAMVQELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ FS       RRT   E
Sbjct: 479 KKRFSTP-----RRTRLVE 492


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 253/782 (32%), Positives = 414/782 (52%), Gaps = 55/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP    E ++E  +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-SRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  QI 
Sbjct: 417 LKELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQ-RQIV 475

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            +  E+ EI  K  D   RRT   E+  A      + +I +E + V I++ G+ +  K  
Sbjct: 476 HD--ELAEIVDKYGD--ERRT---EIIPATGDVTDEDLIARENVVVTITSTGYAKRTKVD 528

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           S          +     K+ D +K      T D IL  +  G+ Y L A  L  G     
Sbjct: 529 SYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693
            ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +   
Sbjct: 646 AINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702

Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   ++   +        + ++G    R+  +     G RGG+G +  K  P+ GK +
Sbjct: 703 --GDDQLLSMSVVHDGEFLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRGKLI 759

Query: 752 SS 753
            +
Sbjct: 760 GA 761


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 299/490 (61%), Gaps = 14/490 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MGL       K
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+GIAVGMAT++  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+      LI +P+ ++++++++I GPD P+GG IV     I ++Y  GRG F+ RA
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKDAYESGRGTFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+ D  +    +R+V
Sbjct: 256 KVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLV 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P  ++ S++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR  V+
Sbjct: 316 IEIKN-GFNPQAVLASLYKHTPLEDSFGINNVALVNGQ-PQTLGLLDLLRVYIDHRLSVV 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D   + +  +++ F LTE Q +
Sbjct: 374 RRRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMAVFDLTEVQAN 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L  E  +++ +L S       ++ E+ EV E +   
Sbjct: 434 YILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSDELAEVAEKYGND 493

Query: 490 TDLGRRRTTF 499
                RRT  
Sbjct: 494 -----RRTVL 498


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/517 (39%), Positives = 309/517 (59%), Gaps = 16/517 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     F+K
Sbjct: 11  DRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D  AA RYTE 
Sbjct: 71  SARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTET 130

Query: 135 RMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  V+ + +L+ + E+ VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP 
Sbjct: 131 RLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++ S + I+++Y  GRG   VR
Sbjct: 191 HNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGS-QGILDAYLEGRGSIPVR 249

Query: 254 ARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               +EE+  G+G      I+VTE+PYQV K+  IEK+A+L+   ++  + DIRDES  +
Sbjct: 250 GIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDRE 309

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    D ++E ++  + +++ F   +  +  G+ PQ + L  +L+++L+ R
Sbjct: 310 GMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQ-PQQLSLKQLLEQFLSFR 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
              L RR    ++  +RR+ IL+GLL +  ++D +I I+R        +  +   F L E
Sbjct: 369 EGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVHFDLNE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +  ++R++K  
Sbjct: 429 RQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRR 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           F        RRT   E+     A  +Q      PI+ 
Sbjct: 489 FGSP-----RRTRLPEIPPEAIAAPRQVTAPVAPISA 520


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 8   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 68  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 128 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 188 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 247 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 307 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 366 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 426 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 486 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 538 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 597

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 598 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 658 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 701

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 702 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 731


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 224/630 (35%), Positives = 355/630 (56%), Gaps = 39/630 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 336 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQ 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+    EI
Sbjct: 454 VQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDEL---DEI 510

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
            +K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 511 VAKYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGG 565

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     +E D +       T + +L  +  G     KAY LP G+  S    G+ +  
Sbjct: 566 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS---KGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFAPDESIQTVLSIPNYEVAKYLVLATR 652


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKTDAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 483 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 535 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 594

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 595 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 655 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 698

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 699 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 728


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/630 (36%), Positives = 348/630 (55%), Gaps = 35/630 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + K
Sbjct: 14  DRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 74  SARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  ++E I GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 194 NLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QGIQDAYTTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  + DI DES++ V 
Sbjct: 253 RMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGISDIHDESSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ +  H+
Sbjct: 313 MRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRLDQMIRLYTTHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARAGLMELLDVDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q    A    E+KEI
Sbjct: 431 IQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQR---AIVRDELKEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKYGDDRRTR-----IIAADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +       T D +L  +T G     KAY LP  +  + RG   A  L
Sbjct: 543 KGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEAS-RTARGQHVANLL 601

Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKG 621
               +   Q ++    Y+    L++ +  G
Sbjct: 602 AFQPDERIQSVIQIKTYEDAPYLVLATRNG 631


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 253/800 (31%), Positives = 404/800 (50%), Gaps = 83/800 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KKSAR+V
Sbjct: 73  ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE R+ ++
Sbjct: 133 GDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP HN++E 
Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L ++ NPE +I+++++ +  PDFPTGGI+      + E+YR GRG   +RA+  +E
Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILY-GLSDVHEAYRTGRGKAIIRAKTHIE 311

Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E   G+   I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    +    R
Sbjct: 312 EWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKR 371

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  ++  + ++  F +N+  L  G+ P+ + +  IL E+L+ RREV+ R + F
Sbjct: 372 GANANVVLNLLYKNTQLQDSFGINLVALVNGQ-PKQLNIKEILVEFLSFRREVVTRVTMF 430

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV-----MVSR-- 420
           R      RV +++G  IA  N+D+ I IIR     K           P      M+ R  
Sbjct: 431 RRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRAN 490

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q   IL +RL+SL  LE+ +I +E       K
Sbjct: 491 LDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEY------K 544

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQA 513
           E +D++++        I  +   V  I + S      + G  R T   V+ A+    +  
Sbjct: 545 ELVDTIID-----LTDILAKPERVTAIIADSLETVAAEFGDERKTQI-VANAENVKTKD- 597

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +++ G+I        R+ K       A   KEGD +     A T D +L 
Sbjct: 598 LIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLC 657

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV-----YDSTCKLLVVS 618
            +  G+ + L   ++  G     G  I  +++L  ++ +          Y     + + +
Sbjct: 658 FTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMAT 717

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G        +     R G   + +   + +       G H V +  +N K++ FS D+
Sbjct: 718 ADGTVKKTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDE 777

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +  M R   GVR     +G    VI   +C   E +T + +    Y +           R
Sbjct: 778 VRAMGRAATGVRGMRLDEG--QKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGR 835

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G +  +   R+GK +S+
Sbjct: 836 GTKGIISIQTTERNGKVVSA 855


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 336/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 224/630 (35%), Positives = 355/630 (56%), Gaps = 39/630 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 336 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQ 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+    EI
Sbjct: 454 VQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDEL---DEI 510

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
            +K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 511 VAKYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGG 565

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     +E D +       T + +L  +  G     KAY LP G+  S    G+ +  
Sbjct: 566 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS---KGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFAPDETIQTVLSIPNYEVAKYLVLATR 652


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/517 (38%), Positives = 312/517 (60%), Gaps = 11/517 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MG
Sbjct: 9   VSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMG 68

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D 
Sbjct: 69  LRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DG 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+GIAV
Sbjct: 128 PAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD-- 303
           GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+ D  
Sbjct: 247 GRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLT 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +    +R+V+  KN   +P+ ++ +++  + +E  F +N   L  G+ PQ + L  +++ 
Sbjct: 307 DRTNGLRLVIEIKN-GFNPEAVLAALYKHTPLEDSFGINNVALVDGQ-PQTLGLLDLMRV 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++ HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D   + +  +   
Sbjct: 365 YIDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKLKVV 424

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ Q + IL LRLR L K    ++++E + L  E  ++  +L S       ++ E+ 
Sbjct: 425 FDLTDTQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILGSDAALRELVSEELA 484

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           EV E +   TD   +  T  E+  A +A   Q+  +K
Sbjct: 485 EVAERY--GTDRRTQLKTKDEMQVAIEAVTAQSKTKK 519


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 340/594 (57%), Gaps = 34/594 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDHSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    ++N     E ++  + + + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 194 NLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGT-QGISDAYKTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 253 RMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 313 LRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVEHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V  RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 371 LDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLGIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q    A    E+ EI
Sbjct: 431 IQAQAILDMQLRRLAALERERIVDDLAKIEAEIADLEDILAKPERQR---AIVRDELAEI 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R     +  AD     + +I +E + V I+  G+         RS K   
Sbjct: 488 VDKHGDDRRTR-----IIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
             +     K+ D ++      T D IL  +T G     KAY LP   L + RG 
Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEA-LRTARGQ 595


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 483 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 535 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 594

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 595 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 655 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 698

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 699 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 728


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG  S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 391/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               V+  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/516 (37%), Positives = 312/516 (60%), Gaps = 14/516 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M +MG+       K
Sbjct: 12  ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG++D    AA RYTE 
Sbjct: 72  SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   ++D+P+  +++++ ++ GPD PTGG I+   + I ++YR GRG F++RA
Sbjct: 191 NLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRII-GLDGIADAYRTGRGSFKIRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D++D  +     R+V
Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN  ++P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L+ +L HR +V 
Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +        ++  F L E Q +
Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L K    +++SE   L    E +  +++   +    ++ E+ EV   +   
Sbjct: 428 YILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTP 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
                RRT     + +  A      +  +P  V++S
Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLS 518


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 335/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/696 (32%), Positives = 397/696 (57%), Gaps = 26/696 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L+++I GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPT-GGIIQGIDGIKKAYESGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 RVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGLREIIESYLNHQIEVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ F  TE Q +AI
Sbjct: 361 RTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++ ++L+      + I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHDALLSVIKDELNEIKKKFK---- 476

Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           + R  T   E+S  + DK    + M+  E + + +S+ G+I+   + S + S +     K
Sbjct: 477 VDRLSTIEAEISEIKIDK----EVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ +V 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 605 AF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH 660
            +   D       V +  N  I + S      TR  K    +KV   +++  V+++  D 
Sbjct: 593 VYNEKDFNNNAFYVMATKNGMIKKSSVPQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQ 652

Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           +  V  ++ + L +S D++ +   R  G++  + KD
Sbjct: 653 LVTVLTHKGMSLTYSTDELSDTGLRAAGIKSINLKD 688


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 231/671 (34%), Positives = 377/671 (56%), Gaps = 26/671 (3%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++AM   G      ++KSA+ VG VIG  HPHGD 
Sbjct: 29  YAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGLVIGNYHPHGDS 88

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           SVYD++VR++Q +  R P I   GN G+ID D AAA RYTEAR+ +V +++ + +D+D V
Sbjct: 89  SVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEARLAKVTQVMEEDLDKDTV 148

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           +    +++ D EP V P  FP +L NG +GIA G AT++P HN+ E+ +A +  I N E 
Sbjct: 149 EMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVIDATIYRIQNAEC 208

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CVEEVGRGSWCIVVT 271
           S+  +++ + GPDFPTGG IV+  E I E++  G+G   VRA+   ++E  +    IV+T
Sbjct: 209 SLNDVMDILPGPDFPTGG-IVQGEEGIREAFTTGKGRIVVRAKTEIIQE--KNLQQIVIT 265

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           EIPY+V K  L++K+ E+ I++ +  L D+RDES  +   ++    + +D +L+++  F 
Sbjct: 266 EIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRKDVDANLILQYFFK 325

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D++  +  N NV  M   P  + L G+L  ++  R+EV+ RRS F +  ++ RV I++
Sbjct: 326 NTDLQVYYNYN-NVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELNKMEARVHIIE 384

Query: 392 GLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GL+ A   +DE+IAIIR ++DK   K  ++  F   E Q +AI+ LRL  L   +   ++
Sbjct: 385 GLIKAVSVLDEVIAIIRASKDKADAKFRLIENFGFDEVQAEAIVTLRLYRLSNTDIVSLR 444

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +E   L+ + E+  S+L +     + +  E+R+VKE +      G  R T  E    +  
Sbjct: 445 NEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENY------GDARRTKIEAKIDEIN 498

Query: 509 TLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             ++AMI  E + + +S  G+++  SL+S ++V       K GD L      +T D +LL
Sbjct: 499 ISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQETGLKTGDQLIGQREVNTLDTLLL 558

Query: 566 LSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ++ G    +P   +   +    G  +  L+ ++  + +++A V   +DS   + +V +K
Sbjct: 559 FTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWITLV-TK 617

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQ 677
           GN     +       R  + F  ++ EEK ++    +      V VV ++   L  S DQ
Sbjct: 618 GNKIKKTKLSDWKVERTSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALRMSQDQ 677

Query: 678 IPEMSRGKGVR 688
           IPE+   KGV+
Sbjct: 678 IPEVKASKGVQ 688


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 218/707 (30%), Positives = 402/707 (56%), Gaps = 40/707 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +     P  + L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR ++DK   K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++  SL+S+S      +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L  L  +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653
           F Y        + ++     + ++ +I  TR       +T+       +K+ +EE   + 
Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650

Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           V +  D     V +V      L + +  +P + ++  GV+  + KDG
Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 391/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               V+  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 391/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               V+  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/627 (35%), Positives = 353/627 (56%), Gaps = 33/627 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 336 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQ 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+    EI
Sbjct: 454 VQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDEL---DEI 510

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
            +K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 511 VAKYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGG 565

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
             +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+ 
Sbjct: 566 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGARDSKGQHVANLLQ 625

Query: 596 LNHNQDIVTAFVYDS--TCKLLVVSSK 620
              ++ I T     +    K LV++++
Sbjct: 626 FAPDESIQTVLSIPNYEVAKYLVLATR 652


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/632 (34%), Positives = 370/632 (58%), Gaps = 26/632 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +++  V+F   +++  SEP V P+ +PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSALSSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI +  +  +D P+ SI+ L+E+I GPDFPTGGII +  + I ++Y  GRG   VR 
Sbjct: 185 HLNEIIDGVILRMDKPDCSIDDLMEHIKGPDFPTGGII-QGVDGIKKAYETGRGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E++  G   IV+TEIPY+V K+ L++KI E  + +++  + ++RDE+    +RIV+
Sbjct: 244 KAEFEDLRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRIVI 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K +  DP+ ++  ++  SD++   P N N++++  R P++M L  +L  ++ HR+EV+
Sbjct: 304 ELK-KDADPEGVLHYLYKNSDLQ--IPYNFNMVAIHNRHPKLMGLRELLDAYIGHRKEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS F +Q  + R  I++GL+ A   +DE+I  IR ++DK   K  ++++F  TE Q +
Sbjct: 361 TRRSQFELQKAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAKFEFTEPQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E ++L     ++ S+L S K+ ++ I  E+R+VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSILESEKKLFSVIKKELRDVKKRFADE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                RRT         K  L + ++  E + V ++  G+++     S   S       K
Sbjct: 481 -----RRTRIEAEIEEIKINL-EVLVASEDVIVTVTKEGYVKRTSQRSFAASNGQDFGMK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           + D L   L  +TTD +L+ +  G     P   L  +  +  G+ I  +I ++ N+ IV 
Sbjct: 535 DSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRWKDLGQHIANIIPIDRNESIVR 594

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
           A     +++   LL ++  G   +V+++E+ A
Sbjct: 595 AIPVKDFETEEYLLFMTKNG---MVKKTELKA 623


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 226/713 (31%), Positives = 398/713 (55%), Gaps = 40/713 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL----NSGKQQWNQIACEIREVKEIFSK 488
            L+L  L   +   ++ E   L   +EKI  L+    +  +  +N +  E+REVK+ F+ 
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAEL---REKIAMLVAIIGDERRTMYNLMKKELREVKKKFAT 475

Query: 489 STDLGRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH- 544
                 R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L  
Sbjct: 476 P-----RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEE 526

Query: 545 --FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHN 599
              ++ D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N
Sbjct: 527 IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETN 586

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKL 652
           + I+   V   +D        +  G    VE  E     T + K+  + K+  + +++  
Sbjct: 587 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVA 646

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
           V  +  D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 647 VAPIKLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 699


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 338/594 (56%), Gaps = 34/594 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 336 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQ 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L         +L   ++Q   I  E+    EI
Sbjct: 454 VQADAILAMQLRTLTRMNRDKIVAEHEELQRRIADYIDILAKPERQRKIIGDEL---DEI 510

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
            +K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 511 VAKYGD--ERRTRILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGG 565

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
             +     +E D +       T + +L  +  G     KAY LP G+  S   H
Sbjct: 566 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQH 619


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/497 (40%), Positives = 304/497 (61%), Gaps = 14/497 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL   
Sbjct: 13  TTPFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA 
Sbjct: 73  RGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAP 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT
Sbjct: 132 RYTEARLAPAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E+  AA  LI NP+ ++E L+ ++ GPD P+GG IV   + I ++Y  GRG 
Sbjct: 192 NMAPHNLVEVISAARHLIANPDATLEDLMRFVPGPDLPSGGRIV-GLDGIRDAYATGRGS 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAE 307
           F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D  +   
Sbjct: 251 FKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRKH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  KN   +P  +++ ++  + ME  F +N   L  G+ PQ + L  +L  ++ H
Sbjct: 311 GLRLVIELKN-GFNPTAVLQQLYRYTPMEDSFGINNVTLVDGQ-PQTLGLVALLSVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+       ++S + LT
Sbjct: 369 RIDVVRRRTIFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++LNS +   + ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDQLRREIAELEAILNSEELLRSLVSDELEAISE 488

Query: 485 IFSKSTDLGRRRTTFCE 501
                     RRT   E
Sbjct: 489 EHGTP-----RRTILLE 500


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 226/698 (32%), Positives = 394/698 (56%), Gaps = 30/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG II +  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES    +RI + 
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  S D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 302 LKKDS-DEQTILNYLYKYTDLQINYNFNMVAID-NFTPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KS 489
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F   + 
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNPRL 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           ++L  +     E    D A+L    I +E   V ++  G+I+     S + S L     +
Sbjct: 480 SELQDQ----AETIEIDTASL----IVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L    +A TT  +LL +  G     P   L   R    GE + Q L++ + N++I+
Sbjct: 532 DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEII 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VT 657
            A + ++        V+  G    VE  E     T K K+  + K+   E + + V  V 
Sbjct: 592 FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVV 651

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
            D + ++ E    L F+I+++P + ++  GV+  + KD
Sbjct: 652 LDDIMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKD 689


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 330/542 (60%), Gaps = 20/542 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+++     ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 14  VEDVVLEGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMF 73

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+  
Sbjct: 74  DGGYRPDRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPG 133

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +M Q+A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SG
Sbjct: 134 NDGAAAPRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSG 193

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ E     +DNP  +    +E LL  I GPDFPTG  I+   + 
Sbjct: 194 IAVGMATNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATIL-GHKG 252

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   +I  +
Sbjct: 253 IEDAYRTGRGSITMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGI 311

Query: 299 EDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            D+RDE++     R+V+  K R     +++ +++  + ++  F  NM  +  G VP+ + 
Sbjct: 312 ADLRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQDNFSANMLAIVDG-VPRTLS 369

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD  ++ W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +  +  
Sbjct: 370 LDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAA 429

Query: 417 ---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              ++    + E Q  AIL+++LR L  LE  +I+     L A  ++ +++L S ++Q  
Sbjct: 430 REGLMELLEIDELQARAILDMQLRRLAALERQKIQDRHSELEAMIQEYNAILASEERQ-R 488

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           QI  E  E+ EI +K  D   RRT        D +   + +I +E + V I+  G+++  
Sbjct: 489 QIISE--ELAEIVAKHGD--DRRTHILMGFDGDMS--MEDLIPEEEMVVTITRGGYVKRT 542

Query: 534 KS 535
           +S
Sbjct: 543 RS 544


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 313/523 (59%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 30  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 89

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 90  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 149

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG+SGIAVGMAT++P
Sbjct: 150 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 209

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I ++Y  GRG F++
Sbjct: 210 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGIRDAYETGRGTFKI 268

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 269 RATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLR 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 329 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++ RF L+E Q
Sbjct: 387 VVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIERFGLSEVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L+ E   +  +L S  +    ++ E+  V + F 
Sbjct: 447 TQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLVSGELASVAKKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S A  A      +  +P  V++S+ G +
Sbjct: 507 TE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLL 543


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 391/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
                +  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 391/697 (56%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               V+  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 218/691 (31%), Positives = 389/691 (56%), Gaps = 28/691 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY + K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             R +   + + A +      ++E+E   V ++  G++     RS  S +VD   +  ++
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETF-VSVTRGGYLKRTSPRSFNSSTVD--EVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   N++++ 
Sbjct: 533 DDRLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTG 658
           A + D+        ++  G    VE  E     T K K+  F K+ +E+   + +  +  
Sbjct: 593 AELVDNFDEGTYFALTKLGQIKRVERKEFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           D V +V +N   L F+I+++P + ++  GV+
Sbjct: 653 DDVMLVTQNGYALRFNIEEVPVVGAKAAGVK 683


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 253/800 (31%), Positives = 404/800 (50%), Gaps = 83/800 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KKSAR+V
Sbjct: 73  ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE R+ ++
Sbjct: 133 GDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP HN++E 
Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L ++ NPE +I+++++ +  PDFPTGGI+      + E+YR GRG   +RA+  +E
Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILY-GLSDVHEAYRTGRGKAIIRAKTHIE 311

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E   G+   I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    +    R
Sbjct: 312 EWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKR 371

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  ++  + ++  F +N+  L  G+ P+ + +  IL E+L+ RREV+ R + F
Sbjct: 372 GANANVVLNLLYKNTQLQDSFGINLVALVNGQ-PKQLNIKEILVEFLSFRREVVTRVTMF 430

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV-----MVSR-- 420
           R      RV +++G  IA  N+D+ I IIR     K           P      M+ R  
Sbjct: 431 RRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRAN 490

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q   IL +RL+SL  LE+ +I +E       K
Sbjct: 491 LDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEY------K 544

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQA 513
           E +D++++        I  +   V  I + S      + G  R T   V+ A+    +  
Sbjct: 545 ELVDTIID-----LTDILAKPERVTAIIADSLETVAAEFGDERKTQI-VANAENVKTKD- 597

Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +++ G+I        R+ K       A   KEGD +     A T D +L 
Sbjct: 598 LIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLC 657

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV-----YDSTCKLLVVS 618
            +  G+ + L   ++  G     G  I  +++L  ++ +          Y     + + +
Sbjct: 658 FTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMAT 717

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G        +     R G   + +   + +       G H V +  +N K++ FS D+
Sbjct: 718 ADGTVKKTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDE 777

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +  M R   GVR     +G    VI   +C   E +T + +    Y +           R
Sbjct: 778 VRAMGRAATGVRGMRLDEG--QKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGR 835

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G +  +   R+GK +S+
Sbjct: 836 GTKGIISIQTTERNGKVVSA 855


>gi|332686600|ref|YP_004456374.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
 gi|332370609|dbj|BAK21565.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
          Length = 813

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 207/617 (33%), Positives = 370/617 (59%), Gaps = 21/617 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+KSA
Sbjct: 7   IQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEAR+
Sbjct: 67  KSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLRETLIEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ ++++ VDF   +++ + EP V P++ PNLL NG++GI+ G AT IP+HN+
Sbjct: 127 SELSGELLKDIEKETVDFVWNFDDTEKEPTVLPARVPNLLINGSTGISAGYATEIPTHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  + LID+P  S+EKL+ +I GPDFPTGGI+ + +E + ++Y  G+G   +R++ 
Sbjct: 187 SEVIDGTIYLIDHPNTSLEKLMTFIPGPDFPTGGIL-QGKEELKKAYETGKGKVVLRSKT 245

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            +E +  G   I+VTEIPY+V K+ L++K+ E+ + K+I  + +IRDES    +RIV+  
Sbjct: 246 AIESLRGGRQQIIVTEIPYEVNKAVLVKKMDEIRLNKKIDGMAEIRDESDRTGLRIVIEL 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  + +   ++  +F  ++++  +  NM  +     P+ + L  IL  +++HR+ V+  R
Sbjct: 306 KKEA-NAQGILNYLFKNTELQINYNFNMVAID-NMTPRQVGLVHILNSYISHRKIVIKNR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           S F ++   +R  I+ GL+ A   +D++IA IR ++DK   K  +V  ++ TE Q +AI+
Sbjct: 364 SHFELEKAKKRQHIVSGLIKALSILDKVIATIRESKDKKNAKQNLVKTYAFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q++ E + L    EK+  +L + K+ +  +  E+REVK+ ++     
Sbjct: 424 NLQLYRLTNTDITQLEKEANELALSIEKLTEILENEKELFAVMKKELREVKKKYT----- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549
              R T  E    +     + ++ +E + V +++ G+I+  S++S++      +  K GD
Sbjct: 479 -HERATKIENEIQEIKIDTEVLVSQEDVIVTVTHEGYIKRSSIRSYNASKPEEIGIKGGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +A   +T D +LL++        P   L  L  +  GE + + +++L+ ++ I+ A+
Sbjct: 538 FLLLARQVNTLDHLLLITNKANVIYRPVHELPDLRWKELGEHLSRTILNLSADEAIIGAY 597

Query: 607 VYD--STCKLLVVSSKG 621
           +Y   S  K  V  +K 
Sbjct: 598 LYKELSATKTFVFMTKA 614


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 593 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 653 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 696

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 697 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 726


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+
Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 313/523 (59%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 97  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 156

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 157 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 216

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG+SGIAVGMAT++P
Sbjct: 217 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 276

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I ++Y  GRG F++
Sbjct: 277 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGIRDAYETGRGTFKI 335

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 336 RATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLR 395

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 396 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 453

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++ RF L+E Q
Sbjct: 454 VVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIERFGLSEVQ 513

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L+ E   +  +L S  +    ++ E+  V + F 
Sbjct: 514 TQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLVSGELASVAKKFG 573

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S A  A      +  +P  V++S+ G +
Sbjct: 574 TE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLL 610


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/615 (34%), Positives = 361/615 (58%), Gaps = 23/615 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K+A+ V
Sbjct: 8   LALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +
Sbjct: 68  GNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++  VDF   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+
Sbjct: 128 ASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +  ID P  ++++L+  + GPDFPTGGII + ++ I ++Y  G+G   +R +  +E
Sbjct: 188 IDAVIMRIDKPNCTVDELMTVLHGPDFPTGGII-QGKDGIKKAYETGKGKIIIRGKAVIE 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           +   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+    +RIV+  K +
Sbjct: 247 QAKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRIVIELK-K 305

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             D + ++  ++  +D++   P N N++++  R P+++ L  +L  ++ HR+EV+  RS 
Sbjct: 306 DADAEGILNYLYKNTDLQV--PYNFNMVAIHKRHPKLLSLPELLDAYIEHRKEVVTNRSQ 363

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNL 434
           + ++    R  I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L
Sbjct: 364 YELKKAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAKYKFTEAQAEAIVSL 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L    +++ ++LN  K+    I  E+R +K+ ++       
Sbjct: 424 QLYRLTNTDITALKQEAEQLEKTIQELTAILNDEKKLLAVIKKELRAMKKQYADE----- 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSL 551
           RRT   +     K  L + MI  E + V ++  G+++  S +S+S  +      KE D L
Sbjct: 479 RRTVIEDEIEEIKINL-EVMIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDFGMKESDRL 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF--- 606
              +  +TTD +LL +  G     P   L  +  +  G+ I  LI L+ N +I+ A    
Sbjct: 538 LSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRWKDVGQHISNLIPLDRNDEIIAAVPVK 597

Query: 607 VYDSTCKLLVVSSKG 621
            +D +  L+ V+ +G
Sbjct: 598 QFDDSLSLIFVTKRG 612


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/751 (30%), Positives = 409/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 483 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 535 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 594

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 595 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 655 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 698

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 699 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 728


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/507 (39%), Positives = 305/507 (60%), Gaps = 53/507 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIV
Sbjct: 19  VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM ++
Sbjct: 79  GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + 
Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+D P+  I++L++ I  PDFPTG  I      + E Y+ GRG   +R +  +E
Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257

Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +GR      IV+ EIPYQV K++L+EKI +L+  K +  + ++RDES +    V+    
Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  IL E+L HRREV+ RR+ 
Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420
           FR++       I +G  +A  NIDEII +I+   N  + K  +++R              
Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL---- 454
                                 + L+E Q DAIL + LR+L  L++ +I     NL    
Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496

Query: 455 ------LAEKEKIDSLLNSGKQQWNQI 475
                 L++ E+I  ++    ++ NQ+
Sbjct: 497 IDFVDILSKPERITQIIRDELEESNQL 523


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 342/590 (57%), Gaps = 40/590 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM + G     ++ K
Sbjct: 14  DRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAMWDNGYRPERSYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D AAA RYTE 
Sbjct: 74  SAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSRGNDGAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT +A  +++ +D++ VDF+  Y+ + SEPVV PS+ PNLL NG+SGIAVGMAT +P H
Sbjct: 134 KMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSSGIAVGMATKMPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA    +DNP+ S E+ L    E I GPDFPT G IV   + I ++Y  GRG  
Sbjct: 194 NLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIV-GDQGIKDAYSTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R +  +EE G  +  IV+TE+PY+V    +I  IAE +   +I  +  I DES++ V 
Sbjct: 253 RMRGKTSIEEEGNRT-VIVITELPYEVNPDNMILSIAEQLRDGKIAGISKIDDESSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + L+ +++ ++AH+
Sbjct: 312 LRIVVTLK-RDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLALNHLVRLYVAHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------FS 422
            EV+ RR+ + +   ++R  IL+GL+ A   +DE+IA+IR   + + V ++R        
Sbjct: 370 VEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIR---RSETVEIAREGLKDLLE 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + ++Q  AIL+++LR L  LE  +I  +L  +  E      +L   ++Q   +  E+RE+
Sbjct: 427 IDDDQAQAILDMQLRRLAALERQKIIDQLAAIELEIADYKDILAKPERQRAIVGDELREI 486

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            E +        RRT       AD     + +I +E + V I+  G+         R+ K
Sbjct: 487 VEKYGDD-----RRTRIIP---ADGDVTDEDLIAREDVVVTITETGYAKRTRTDLYRAQK 538

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
                +     K+ D ++    + T D +L  +T G     KAY LP  N
Sbjct: 539 RGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTKGRVYRIKAYELPEAN 588


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/499 (39%), Positives = 304/499 (60%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A E +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G+G      ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L  G+ PQ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQ-PQQLSLRRLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  ++  +IA+I+          S      
Sbjct: 359 DYRELTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L AE++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQRLKLLLDNRDQLLDALVQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ F+       RRT   E
Sbjct: 479 KKRFATP-----RRTRLVE 492


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 233/678 (34%), Positives = 382/678 (56%), Gaps = 29/678 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM E G  +   ++KSA+ VG VIG  H
Sbjct: 25  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKGYRKSAKTVGLVIGNYH 84

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R P I  QGN G+ID D AAA RYTEAR+ +++E +L+ +
Sbjct: 85  PHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRYTEARLGKISEHLLKDI 144

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ V +   +++   EP V P+++PNLL NG +GIA G AT+IP HN+ E+ +AA+  I
Sbjct: 145 EKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHNLSEVIDAAVYRI 204

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            + + S+E+L+EYI GPDFPTGG IV+  + I E++  G+G   VR +  +E+  +    
Sbjct: 205 QHADCSLEELMEYIQGPDFPTGG-IVQGLDGIREAFETGKGRIIVRGKAVIEQ-KKTVQQ 262

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+    +  + D+++ 
Sbjct: 263 IVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRVVVDMKKDANGDVILN 322

Query: 328 SIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++  +D++  +  N NV+++  + P  M L  +L  ++ HRREV+ RRS + ++  + R
Sbjct: 323 YLYKNTDLQVSY--NYNVVAIVDKRPVQMGLAQMLDAFIEHRREVIERRSRYDLKKKEDR 380

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL+ A   +DEIIA+IR ++DK   K  ++  F+ ++ Q +AI+ +RL  L   +
Sbjct: 381 CHILEGLIKAVSILDEIIALIRASKDKADSKRRIMDAFAFSDAQAEAIVTMRLYRLSSTD 440

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             Q++ E   LL E E++  +L + +     +  E+ EVK+ F   T    R     E  
Sbjct: 441 ITQLREEYATLLNEIEELHDILENPRMLKKVMIRELHEVKKAF--KTPRLTRIEHEIEEI 498

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV---DLSALHFKEGDSLKIALHAH 558
             DK     AMI  E +   IS  G+ +  S++S++    D++ L  KEGD L      +
Sbjct: 499 VIDKV----AMINSEQVMFTISRDGYFKRVSMRSYNAGKEDMTGL--KEGDHLVGYGEVN 552

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS-TCKLL 615
           T D +L  +T G     P   +   R    G  I   I ++  + I  AFV  S      
Sbjct: 553 TLDHVLFFTTQGTYGYTPVYEVEESRWKEIGSHINSTIRISGEEKITDAFVLRSFATNAY 612

Query: 616 VVSSKGNAFI----VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
           ++S   N  +    V E E+  N +       +  +E +  +     D + +  +N  + 
Sbjct: 613 MISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVS 672

Query: 672 IFSIDQIPEMS-RGKGVR 688
            + +  IPE S R KGV+
Sbjct: 673 RYPVSLIPETSPRSKGVK 690


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/492 (41%), Positives = 306/492 (62%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 138 RLAAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NPE ++E L+ ++ GPD PTGG IV   + I ++Y  GRG F+ RA
Sbjct: 198 NLVEVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIV-GLDGIRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  VE++      +VVTE+PY V   ++IEKI + +  K++  + DI D  +    +R+V
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLV 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P+ +++ ++  S ME  F +N   L  G+ PQ + L  +L  ++ HR  V+
Sbjct: 317 IELKN-GFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQ-PQTLGLVQLLSVYVDHRINVV 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR++FR++    R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LTE Q +
Sbjct: 375 RRRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMSIYDLTEIQAN 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+ E+ E +   
Sbjct: 435 YILELRLRQLTKYSRIELEKEQDQLKREIAELEAILGSDQRLRELVSDELGEIAEKYGTP 494

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 495 -----RRTVLLE 501


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 212/583 (36%), Positives = 336/583 (57%), Gaps = 28/583 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
             +     K+ D +       T D IL  +T G+ Y   A +L
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDL 584


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 334/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 360/709 (50%), Gaps = 56/709 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +M E G      + KS
Sbjct: 16  DIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQGNFG++DGD  AA RYTE R
Sbjct: 76  ARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF D Y+ ++ EP V PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 136 MAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L LID P+++ ++LL+ + GPDFPTGG I+  R    ++   GRG   +R  
Sbjct: 196 LGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEII-GRAGPRQALLTGRGSVIMRGV 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+  G   I+VTEIPYQV K+ L+E IAEL+  K+I  + DIRDES  D   ++  
Sbjct: 255 ASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADIRDESNRDGMRIVVE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F +NM  L+ GR P+ M L  +++ ++  R EV+ RR
Sbjct: 315 LKRDASGEVILNQLYRFTALQSSFGVNMLALNRGR-PEQMGLHQLIQLFVDFREEVVVRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------------- 414
           + F +     R  +L GL IA  NIDE I IIR+   P                      
Sbjct: 374 TKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVE 433

Query: 415 ----PVMVSR----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               P  V        LT+ Q  AIL L L  L  L   +I +E   L         LL+
Sbjct: 434 LIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAALADAIRGYLELLS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   +  E+ EV+E F+    + RR    C++   D     + +I +E + + ++ 
Sbjct: 494 DRANIMAVVREELVEVREKFA----IPRR----CQIVDGDADMEDEDLIVREDMVITVTM 545

Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G++        R+        S +  K  D++     A T   +L  ++ GK Y +   
Sbjct: 546 GGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEESE 630
            L  G     G+A   L+ +   + I +  A   D        ++  +  G+    + S+
Sbjct: 606 RLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSD 665

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            +   R GK  +K+   + +  V     D  V +     + + FS+D++
Sbjct: 666 FVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEV 714


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 217/588 (36%), Positives = 331/588 (56%), Gaps = 39/588 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  M +MGL       
Sbjct: 14  DENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGHV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG++D D  AA RYTE
Sbjct: 74  KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG SGIAVGMAT+I  
Sbjct: 133 ARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGASGIAVGMATNIAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E     + L+D+P  S+  L+ YI GPD P GG+IV   + I ++Y  GRG F+ R
Sbjct: 193 HNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGGVIV-GLDGIKDAYETGRGAFKTR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A+  +E V      IVVT++PY V   ++IEKI E   A R+  +  +++  +    +R+
Sbjct: 252 AKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISSVQNLTDRVHGLRL 311

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN   +P+ +++ ++  + +E  F +N   L  G+ P+ + L  +L+ +L HR +V
Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PRTLGLKEMLQVFLDHRLDV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
             RRS FR+   + R+ +++GLL+A L+ID++IAIIR+ D  +     +++ F L+E Q 
Sbjct: 370 TTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARERLMTAFDLSEAQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL LRLR L K    +++SE D L+A+  ++  +L+  +     +  E+REV      
Sbjct: 430 TYILELRLRRLTKFSRIELESERDELVAKIAQLREILDDPELLRALVKKELREV------ 483

Query: 489 STDLGRRRTTFC---------------------EVSRADKATLQQAMIEKEPITVVISNR 527
           S  LG  R T                        VSR+ K    Q  I  +P  VV+S+ 
Sbjct: 484 SDRLGTPRRTLLLASTGSPVGAGADDAALAALPSVSRSGKGLDLQ--IPDDPCVVVLSSS 541

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           G +  ++     L        D  +  L +    ++ +++ DG A+ +
Sbjct: 542 GALARVEGGD-PLEPGPRAASDGWRAQLASSVRSQVAVVTQDGIAHRI 588


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 226/751 (30%), Positives = 408/751 (54%), Gaps = 44/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEVR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 483 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 535 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 594

Query: 605 AFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTG 658
           A +  S  + L V+   N FI      E S       K   ++K+  + +++  +  V  
Sbjct: 595 ADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIM 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + + +V +N   L FS  ++P         +Q  K  G+  +        L   DS   +
Sbjct: 655 EDLLLVTKNGYALRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASA 698

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +  + N     L +RG +  +     P++ +
Sbjct: 699 FAVTSNSFF-VLTQRGSLKRMAVDDIPQTSR 728


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 215/584 (36%), Positives = 334/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 217/698 (31%), Positives = 389/698 (55%), Gaps = 31/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R +T  + ++    D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L       TT  +L+ +T G     P   L   R    GE + Q + +   N++++
Sbjct: 532 DDDRLLFVQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVI 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
             D V ++  N   L F+I+++P + ++  GV+  + K
Sbjct: 652 KLDDVLLISRNGYALRFNIEEVPVIGAKAAGVKAMNLK 689


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 335/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 335/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 221/705 (31%), Positives = 394/705 (55%), Gaps = 33/705 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F 
Sbjct: 300 ANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L
Sbjct: 359 KEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R 
Sbjct: 419 YRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RL 473

Query: 497 TTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDS 550
           ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     ++ D 
Sbjct: 474 SSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDR 529

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV 607
           L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V
Sbjct: 530 LIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEV 589

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
              +D       V+  G    VE  E     T + K+  + K+  + +++  V  +  D 
Sbjct: 590 LDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDD 649

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
           V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 650 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 694


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 313/523 (59%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 14  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++ + D  AA RYT
Sbjct: 74  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 133

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG+SGIAVGMAT++P
Sbjct: 134 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 193

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG +V     I ++Y  GRG F++
Sbjct: 194 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVV-GLSGIRDAYETGRGTFKI 252

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D  + A  +R
Sbjct: 253 RATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLR 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 313 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 370

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++ RF L+E Q
Sbjct: 371 VVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIERFGLSEVQ 430

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L+ E   +  +L S  +    ++ E+  V + F 
Sbjct: 431 TQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLVSGELASVAKKFG 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E S A  A      +  +P  V++S+ G +
Sbjct: 491 TE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLL 527


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 302/501 (60%), Gaps = 14/501 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV +   I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGT-AGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 --AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
                +R+V+  K     P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 326 DRKNGLRLVIEVKT-GFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D        ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCE 501
           +     S       RRT   E
Sbjct: 504 DTATALSSP-----RRTLLLE 519


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 302/501 (60%), Gaps = 14/501 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV +   I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGT-AGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 --AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
                +R+V+  K     P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 326 DRKNGLRLVIEVKT-GFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D        ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCE 501
           +     S       RRT   E
Sbjct: 504 DTATALSSP-----RRTLLLE 519


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 302/501 (60%), Gaps = 14/501 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV +   I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGT-AGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 --AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
                +R+V+  K     P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 326 DRKNGLRLVIEVKT-GFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D        ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAILASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCE 501
           +     S       RRT   E
Sbjct: 504 DTATALSSP-----RRTLLLE 519


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 302/501 (60%), Gaps = 14/501 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 28  MSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMG 87

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D 
Sbjct: 88  LTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DG 146

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIAV
Sbjct: 147 PAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAV 206

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV +   I E+Y  
Sbjct: 207 GVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGT-AGIREAYET 265

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D S
Sbjct: 266 GRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLS 325

Query: 306 --AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
                +R+V+  K     P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 326 DRKNGLRLVIEVKT-GFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D        ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCE 501
           +     S       RRT   E
Sbjct: 504 DTATALSSP-----RRTLLLE 519


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 338/594 (56%), Gaps = 34/594 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 39  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 98

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 99  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTEC 158

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 159 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 218

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 219 NMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 277

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 278 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 336

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 337 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 394

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 395 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQ 454

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+    EI
Sbjct: 455 VQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDEL---DEI 511

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
             K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 512 VGKYGD--ERRTKILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGG 566

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
             +     +E D +       T + +L  +  G     KAY LP G+  S   H
Sbjct: 567 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQH 620


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 218/695 (31%), Positives = 388/695 (55%), Gaps = 25/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK  F+ +  L
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGDERTMYNLMKKELRDVKRQFA-TPRL 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
                T  EV   D A+L    I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 480 SSLEDT-AEVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFSASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L       TT  +L+ +T G     P   L   R    GE + Q + +   N++++   
Sbjct: 535 RLLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVLYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDSDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
            V ++ +N   L F+I+++P + ++  GV+  + K
Sbjct: 655 DVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLK 689


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 307/510 (60%), Gaps = 17/510 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVE--EVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E  +VGR        IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    +++++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN       K    +
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE+ +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           R +K  F        RRT   +  +  K++
Sbjct: 484 RSLKRKFGDP-----RRTRIVQPPKTPKSS 508


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 390/697 (55%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
                +  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 308/517 (59%), Gaps = 16/517 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     F+K
Sbjct: 11  DRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D  AA RYTE 
Sbjct: 71  SARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTET 130

Query: 135 RMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  V+ + +L+ + E+ VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP 
Sbjct: 131 RLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++ S + I+++Y  GRG   VR
Sbjct: 191 HNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGS-QGILDAYLEGRGSIPVR 249

Query: 254 ARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               +EE+  G+G      I+VTE+PYQV K+  IEK+A+L+   ++  + DIRDES  +
Sbjct: 250 GIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDRE 309

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    D ++E ++  + +++ F   +  +  G+ PQ + L  +L+++L+ R
Sbjct: 310 GMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQ-PQQLSLKQLLEQFLSFR 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
              L RR    ++  +RR+ IL+GLL +  ++D +I I+R        +  +   F L E
Sbjct: 369 EGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVHFDLNE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +  ++R++K  
Sbjct: 429 RQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRR 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           F         RT   E+     A  +Q      PI+ 
Sbjct: 489 FGSP-----HRTRLPEIPPEAIAAPRQVTAPVAPISA 520


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 209/523 (39%), Positives = 315/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVRLAQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYESGRGTFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D  +    +R
Sbjct: 255 RATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDREHGLR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL+E Q
Sbjct: 373 VVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  ++++E + L AE E++  +L+S  +    ++ E+  V + F 
Sbjct: 433 TQYILDTPLRRLTKYDRIELEAEKEKLTAEIEELTRILDSDAELRKLVSTELAAVAKKFG 492

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E      A +    +  +P  V++S+ G +
Sbjct: 493 TP-----RRTLLLEAGAVPVAAV-PLQVADDPCRVLLSSTGLL 529


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 312/523 (59%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++ + D  AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   ++ L++++ GPD PTGG IV     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLGGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D  +    +R
Sbjct: 261 RATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  
Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q
Sbjct: 379 VVRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L K +  +++SE D L AE E++ ++L S  +    ++ E+  V +   
Sbjct: 439 TQYILDTPLRRLTKFDRLELESERDRLNAEIEELTAILESDAELRKLVSSELAAVAKKHG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT   E + +  A +    +  +P  V++S+ G I
Sbjct: 499 TP-----RRTVLLESADSPVAAI-PLQVADDPCRVLLSSTGVI 535


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 352/622 (56%), Gaps = 33/622 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 18  LRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-A 140
           V+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG++DGD  AA RYTE+R+  +  
Sbjct: 78  VLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVDGDPPAAMRYTESRLQALTT 137

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ 
Sbjct: 138 DALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELI 197

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LALI +P++   +L+  I GPDFPTGG I+  R  I E+Y  GRG   +R    VE 
Sbjct: 198 DGLLALIADPDVEDRQLMAIIPGPDFPTGGQIL-GRRGIRETYTTGRGSVTMRGVASVET 256

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     I++TE+P+Q  K+ LIE+IAEL+  K++  + DIRDES  D   ++   
Sbjct: 257 IEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDGISDIRDESDRDGMRIVIEL 316

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ ++F L+ ++  F   M  L  G  P ++ L  +L+ +L  R E + RR+
Sbjct: 317 RRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGE-PVLLTLRKMLEVFLEFRVETIERRT 375

Query: 377 SFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL GLLIA  ++D    +I    +    +  +V++F LTE Q DAIL 
Sbjct: 376 RFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARSELVAQFGLTEIQADAILQ 435

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ E ++LLA+      +L   ++ +  I  E+  ++  +     L 
Sbjct: 436 MQLRRLTALEADKIRLEHEDLLAKITDYKDILARRERVFGIITDELGAIRNRY-----LS 490

Query: 494 RRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG-- 548
            RRT   ++    +  L+   +I  E   V+++  G+++ +     + ++     K G  
Sbjct: 491 PRRTEILDL----EGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTR 546

Query: 549 ----DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI 602
               +++K+ +  +  D +LL S  G  Y +PA    + S    G  I  L+ +   + I
Sbjct: 547 SQGEEAVKLFISCNDHDNLLLFSDRGVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQI 606

Query: 603 VTAF---VYDSTCKLLVVSSKG 621
            +      +     L++++S G
Sbjct: 607 TSLLAVSAFSEEAMLVMLTSGG 628


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 209/543 (38%), Positives = 311/543 (57%), Gaps = 23/543 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V  V +   +E  +L YA+S I  RA+PD RDG KPV RRI++ M +MGL     
Sbjct: 1   MTEGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KS+RIVG+V+GKLHPHGD ++YD+LVRL+Q F+ R PL+ G GNFG++D D  AA RY
Sbjct: 61  HVKSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T  +  ++ G+DED VDF   Y+   ++P V PS FPNLL NGTSGIAVGMAT++
Sbjct: 120 TEARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNM 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+  A   LI NPE  + +L+ +I GPD PTGG I+   + + E+Y  GRG FR
Sbjct: 180 APHNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGGRII-GLDGVREAYETGRGTFR 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDV 309
            RA   +E +      IVVTE+PY V   +++ K+ + + AK++  +  I D S     +
Sbjct: 239 TRATVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGM 298

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  KN   +P+ ++  ++  + +E  F +N NV  +   P+ + L  +L  +LAHR 
Sbjct: 299 RLVIGIKN-GFNPEAVLAELYRQTPLEESFSMN-NVCLVDGQPRTLGLRELLTVYLAHRI 356

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ RR+ F+++    R+ +++GLLIA L+IDE+I +IR+ D        ++  F L+E 
Sbjct: 357 DVIRRRTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMDVFELSEL 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   IL+L+LR L K    ++++E D L  +   ++ LL    +    +A E+    E  
Sbjct: 417 QATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLLADEAKLRELVATELEATAEAI 476

Query: 487 SKSTDLGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
                   RRT        E+S   K       I   P  V++S  G I    + + D S
Sbjct: 477 GSP-----RRTVLIEGSMKELSAKGKKAQADLKIADAPCRVLLSTSGRI----ARTADAS 527

Query: 542 ALH 544
            L 
Sbjct: 528 PLQ 530


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 222/682 (32%), Positives = 386/682 (56%), Gaps = 29/682 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG II +  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES    +RI + 
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  S D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 302 LKKDS-DEQTILNYLYKYTDLQINYNFNMVAID-NFTPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KS 489
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F   + 
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNPRL 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           ++L  +     E    D A+L    I +E   V ++  G+I+     S + S L     +
Sbjct: 480 SELQDQ----AETIEIDTASL----IVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L    +A TT  +LL +  G     P   L   R    GE + Q L++ + N++I+
Sbjct: 532 DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEII 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VT 657
            A + ++        V+  G    VE  E     T K K+  + K++  E + + V  V 
Sbjct: 592 FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLTDAEDVVITVSPVV 651

Query: 658 GDHVAVVGENRKLLIFSIDQIP 679
            D + ++ E    L F+I+++P
Sbjct: 652 LDDIMLMTEKGYALRFNIEEVP 673


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 233/678 (34%), Positives = 381/678 (56%), Gaps = 29/678 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM E G  +   ++KSA+ VG VIG  H
Sbjct: 26  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKGYRKSAKTVGLVIGNYH 85

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA RYTEAR+ +++E +L+ +
Sbjct: 86  PHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRYTEARLGRISEHLLKDI 145

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ V +   +++   EP V P+++PNLL NG +GIA G AT+IP HN+ E  +AA+  I
Sbjct: 146 EKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHNLSEAIDAAVYRI 205

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            + + S+++L+EYI GPDFPTGG IV+  E I E++  G+G   +R +  +E+  +    
Sbjct: 206 QHADCSLDELMEYIQGPDFPTGG-IVQGIEGIREAFETGKGRIIIRGKANIEQ-KKTVQQ 263

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+    +  +  +++ 
Sbjct: 264 IVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRVVVDMKKDANAQVILN 323

Query: 328 SIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++  +D++  +  N NV+++  + P  M L  +L  ++ HRREV+ RRS F ++  + R
Sbjct: 324 YLYKNTDLQVSY--NYNVVAIVDKRPVQMGLAPMLDAFIEHRREVIERRSRFDLKKKEDR 381

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL+ A   +DEIIA+IR ++DK   K  ++  F+ ++ Q +AI+ +RL  L   +
Sbjct: 382 CHILEGLIKAVSVLDEIIALIRASKDKADSKRRIMDAFAFSDAQAEAIVTMRLYRLSSTD 441

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             Q++ E   LL E E++  +L + K     +  E+ EVK+ F         R T  E  
Sbjct: 442 ITQLREEYAALLNEIEELHDILENPKMLKKVMIRELNEVKKAFKTP------RLTSIEHE 495

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV---DLSALHFKEGDSLKIALHAH 558
             +    + AMI  E +   IS  G+ +  S++S+     D++ L  KEGD L      +
Sbjct: 496 IEEIVIDKLAMINSEQVMFTISRDGYFKRVSMRSYGASRDDMTGL--KEGDHLVGYGEVN 553

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS-TCKLL 615
           T D +L  +T G     P  ++   R    G  I   I ++  + I  AFV  S      
Sbjct: 554 TLDHVLFFTTQGTYGYTPVYDVEESRWKEIGSHINSTIRISGEEKITDAFVLRSFATNAY 613

Query: 616 VVSSKGNAFI----VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
           ++S   N  +    V E E+  N +       +  +  +K +V    D + +  +N  + 
Sbjct: 614 MISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDEILIASKNGFVS 673

Query: 672 IFSIDQIPEMS-RGKGVR 688
            + +  IPE S R KGV+
Sbjct: 674 RYPVSLIPETSPRSKGVK 691


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 223/631 (35%), Positives = 361/631 (57%), Gaps = 46/631 (7%)

Query: 10  NTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           NT++  + N+  + +  A+ + YL YA+   K+RA+PD+RDG KPVHRRII+    +   
Sbjct: 4   NTVIPKDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGSYMLKAF 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDSAA
Sbjct: 64  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQDGDSAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +++ +++  V+  D Y+  + EP V P+++PNLL NG  GIAVG+
Sbjct: 124 AMRYTEARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ +A +A IDN +I++E+L+ YI GPD PTGGII+  ++S++ +Y  G 
Sbjct: 184 ATNIPPHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGGIII-GKKSMISAYETGE 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++  G   IV+TE PY+  K++L++ I+E+   KR    +  + DIRD
Sbjct: 243 GKVTLRAKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPISDIRD 302

Query: 304 ESAED-VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ES    +R V+  K +S D  L   +++ +   +D++     NM  L  G+ P  M L  
Sbjct: 303 ESDRSGIRAVIEFK-KSTDMKLAQKILKYLLKKTDLQCNISFNMVALGDGK-PITMGLKL 360

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           ILK ++ +++E++ +R+   ++   +R  I++G + A   +DEII  IR+    K     
Sbjct: 361 ILKYYVEYQKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDAASN 420

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ +F  T  Q +AIL L L  L  LE    + E + LL   +K+  +L S K+    I 
Sbjct: 421 LMEQFDFTYPQAEAILELMLYRLTGLEIDSFEKEHEKLLKVIKKLTKILESEKEILKVIK 480

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLK 534
            E+ EV E +        RRT   E     K  + + +I+++ I + +S  G+I+  SLK
Sbjct: 481 KELIEVGEKYGDD-----RRTAIVEEDEKAKIDVDEIIIDED-IVITMSKEGYIKRTSLK 534

Query: 535 SH---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-------------- 577
           S+   S  +  + ++EGD  +  +++ T D ++  +  G  Y +                
Sbjct: 535 SYNRSSGKVEDIEYREGDFNEYFINSSTKDTLMFFTDSGDMYRIRGMDIPEFKWKEKGEK 594

Query: 578 -GNLLSG----RGHGEAIQLLIDLNHNQDIV 603
             NL+ G    + H  A+  + D N  +D V
Sbjct: 595 LDNLIKGIDLEKNHITAVYSIKDFNLQKDFV 625


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 194/475 (40%), Positives = 290/475 (61%), Gaps = 9/475 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVDGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  +++ F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
              IL+LRLR L K+   ++++E D+L    E++  +L S +   + +  E+ E 
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDHVVTSEMDEA 487


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 226/629 (35%), Positives = 354/629 (56%), Gaps = 44/629 (6%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + KSAR V
Sbjct: 10  IDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSARPV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE R+T +
Sbjct: 70  SDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRLTPL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP HN++E+
Sbjct: 130 AMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNLREL 189

Query: 200 CEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            +A   L++NP+     ++E  +EYI GPDFPT G+IV + + I ++Y  GRG  R+R  
Sbjct: 190 ADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGT-QGIKDAYTTGRGSIRMRGV 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVL 313
             +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DES++ V  RIV+
Sbjct: 249 TSIEEEG-SRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRIVV 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++AH+ EV+ 
Sbjct: 308 TLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVAHQIEVIV 365

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E Q DA
Sbjct: 366 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEVQADA 425

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKI-----DSLLNSGKQQWNQIACEIREVKEI 485
           IL ++LR L  LE  +I  E    LAE E I     D L + G+Q+    A    E+KEI
Sbjct: 426 ILAMQLRRLAALERQKIIDE----LAEIEAIIADLKDILASPGRQR----AIVRDELKEI 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
             K  D  R      ++  A     ++ +I +E + V I++ G+ +  K  +        
Sbjct: 478 VDKYGDDRR-----SQIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGG 532

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++
Sbjct: 533 KGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 592

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKG 621
               + I        Y+    L++ + +G
Sbjct: 593 FQPEERIAQVIQIQSYEDAPYLVLATVQG 621


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  360 bits (923), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 395/709 (55%), Gaps = 33/709 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ G DFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 591

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656
              V   +D        +  G    VE  E     T + K+  + K+  + +++  V  +
Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 223/630 (35%), Positives = 354/630 (56%), Gaps = 39/630 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++Y +LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE +I    GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE++    
Sbjct: 277 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+VL  K R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 336 QRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQ 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR   + D  +  ++    + +
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQ 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+    EI
Sbjct: 454 VQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDEL---DEI 510

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
            +K  D   RRT     S        + +I +E + V +++ G+I+  K+          
Sbjct: 511 VAKYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGG 565

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     +E D +       T + +L  +  G     KAY LP G+  S    G+ +  
Sbjct: 566 KGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS---KGQHVAN 622

Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           L+    ++ I T     +    K LV++++
Sbjct: 623 LLQFAPDESIQTVLSIPNYEVAKYLVLATR 652


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 238/757 (31%), Positives = 393/757 (51%), Gaps = 97/757 (12%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           + YLAYA+S I  RA+PD+RDG KPVHRRI++AM E+GLD    FKK AR+VGEV+GK H
Sbjct: 73  QSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCARVVGEVLGKFH 132

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146
           PHGDQSVYD+LVR+AQ F     L+ G GNFG++D D  AA RYTE R+  VAE ++L  
Sbjct: 133 PHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMRYTECRLRSVAEAMLLAD 192

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D DAVDF +T++   +EP V P++ PN+L NG++GIAVGMATSIP HN++E+ +A    
Sbjct: 193 IDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSIPPHNLREVADALAVY 252

Query: 207 IDNPE-ISIEKLLEYIIGPDFPTGGIIVESRES--IVESYRLGRGGFRVRARWCVEEV-- 261
             +P+  +++ LL+ +  PDFPT GII+  +E     + Y  G+G   +R    +EE+  
Sbjct: 253 AADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKGSVTLRGAAHIEEIKT 312

Query: 262 ---GRGSW---CIVVTEIPYQVQ-----------------KSRLIEKIAELIIAKRIPLL 298
              G+ +     +++T IPYQ +                 K+ L  +IA+L+ ++++  +
Sbjct: 313 SVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLCGQIADLVNSRQLDGV 372

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   V+    RS DP+ + E ++  + ++ R  +N+  L +GR P+V+ L 
Sbjct: 373 VDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSVNLVGL-IGREPKVLTLM 431

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP---K 414
            I++E+L  R E + RR+   +     R+ +++G L      D ++A IR  +D P   K
Sbjct: 432 DIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAVVAAIRAAKDGPEAQK 491

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
            +  + FSL++ Q +A+L + LR L  LE  ++++E  +L A+ E++++LL+        
Sbjct: 492 TLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAA 551

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT------------- 521
           +A E +E+++ +      G  R T  + S A  A        + P +             
Sbjct: 552 VASEAKELRDKY------GVERKTLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAER 605

Query: 522 ------------------------VVISNRGWIRSLKSH--------SVDLSALHFKEGD 549
                                   +V++ +G+I+ +           ++       + GD
Sbjct: 606 EMAAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGD 665

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +    H +  D +L  +  G+ Y + A ++   S    G     ++ L   + I     
Sbjct: 666 QVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLP 725

Query: 608 YDSTCK--------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
            D+  +        L++++++G       SE     R GK  L +   +++K V  V  G
Sbjct: 726 VDTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDG 785

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           D + V G +  +L FS+D I   SR G GV+   +++
Sbjct: 786 DGIMVAGVDGMVLHFSMDSIRAQSRIGSGVKAMKFRE 822


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 217/691 (31%), Positives = 389/691 (56%), Gaps = 28/691 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547
             R +   + + A +      ++E+E   V ++  G++     RS  S +VD   +  ++
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRGGYLKRTSPRSFNSSTVD--EVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   N++++ 
Sbjct: 533 DDRLIFISSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVIY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTG 658
             + D+        V+  G    VE  +     T K K+  F K+ +E+   + +  +  
Sbjct: 593 TELVDNFDEGTYFAVTKLGQIKRVERKQFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           D V +V +N   L F+I+++P + ++  GV+
Sbjct: 653 DDVMLVTQNGYALRFNIEEVPVVGAKAAGVK 683


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 340/600 (56%), Gaps = 38/600 (6%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+   L E N    ++ V L   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A 
Sbjct: 1   MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + KSAR V E +G  HPHGD S+YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTEAR+T +A  +L+ + E+ VDF   Y+ +  EP V PS+ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ +A    ++NPE   E  L    E + GPDFPT  +IV S +
Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGS-Q 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R+   +EEV +G+  ++VTE+PYQV    LI  IAE +   ++  
Sbjct: 240 GIRDAYMTGRGSIRMRSVVDIEEV-KGTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKG 298

Query: 298 LEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           +  I D+S++   +RIV+  +   +   +++ +++  S ++T F  NM  +  G VP+ +
Sbjct: 299 ISKIEDQSSDRAGLRIVITLRRDGV-ARVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            LD +++ ++AH+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR   N + 
Sbjct: 357 RLDQMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEA 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q 
Sbjct: 417 ARTGLMDLLDIDEIQADAILAMQLRRLSALERQKIIDELAEIEREIADLKDILERPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E++EV + +        RRT       A+     + +I +E + V I+  G+   
Sbjct: 477 AIVRDELKEVVDKYGDD-----RRTRIIP---AEGDVTDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
                 RS K     +     K+ D +     + T D +L  +T G     KAY LP  N
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTKGRVYRAKAYELPEAN 588


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/462 (41%), Positives = 285/462 (61%), Gaps = 9/462 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG+I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMII-GRDGIREAYASGRGTLST 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310
           RA   +E V      IVVTE+PY V   +++E+I+E +   ++  +    D S      R
Sbjct: 255 RATTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP  ++  +   + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 LVIELKT-GFDPHAVLVQLLKHTPLQDNFAMNNVALVNGR-PHTMGLKEMLQVWIDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N D  K  +++ F L + Q
Sbjct: 373 VIRRRSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMAVFDLDDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
              IL+LRLR L K+   +++SE D+L    E+++ +L S K
Sbjct: 433 AQYILDLRLRRLTKMSRIELESERDDLHKRIEELERILASDK 474


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 356/636 (55%), Gaps = 27/636 (4%)

Query: 1   MGVDNISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M     SN     +EN   V  + +   ++  +L Y++S I  RA+PD+RDG KPV RRI
Sbjct: 1   MAKRTTSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +MSEMGL       KS+R+VG+V+GK HPHGD ++YD+LVR+AQPF  R PL+ G GN
Sbjct: 61  LFSMSEMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++D D  AA RYTEAR+   A ++  G+DED VDF   Y+++  +P V P+ +PNLL 
Sbjct: 121 FGSLD-DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLV 179

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG ATS+P HN+ E+  AA  LI +P+ S++ L++++ GPD P GG IV   +
Sbjct: 180 NGVSGIAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIV-GLD 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  G+G F+ RA   +E++      IVVTE+PY V   ++IE++  L+  K++  
Sbjct: 239 GIRDAYLTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQG 298

Query: 298 LEDIRD--ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + D++D  +    +R+V+  KN   +P+ ++E +F L+ ME  F +N   L  G+ PQ +
Sbjct: 299 ISDVKDLTDRKHGLRMVIEVKN-GFNPEAVLEQLFKLTPMEDSFGINNVALVDGQ-PQTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L+ ++  R  V+ RR+++R++    ++ ++ GLLIA L+IDE+I +IR  D    
Sbjct: 357 GLKDLLRHYVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTAT 416

Query: 416 V---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
               +   F L+E Q + IL L+LR L K    +++++ D L  + ++++++L   K   
Sbjct: 417 ARQRLRDVFDLSELQANYILELQLRRLTKFSRLELENQRDELEKQIQELEAILGDEKLLQ 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-R 531
             ++ E+ +V + +        RRT   E +    +      +  +P  V++S+ G + R
Sbjct: 477 RMVSTELADVAKKYGTP-----RRTVLLESAGNPVSAAAPLEVSDDPCWVLLSSTGLLAR 531

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGR-- 584
           +  +  +       K  D++  A+       + L+++ G+     A  LP    L G   
Sbjct: 532 TSNAEPIPAEGPRAKH-DAVISAVRTTARGEVGLVTSRGRMIRISALELPTLPPLGGAPS 590

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              G  +   +DL   ++ +T    D     L + +
Sbjct: 591 LSGGAPLAAYVDLPRGEEPITVVSLDPDGPGLALGT 626


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 222/682 (32%), Positives = 385/682 (56%), Gaps = 29/682 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG II +  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES    +RI + 
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  S D   ++  ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  
Sbjct: 302 LKKDS-DEQTILNYLYKYTDLQINYNFNMVAID-NFTPRQVGLQKILSSYIAHRREIIIA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KS 489
           + L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F   + 
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNPRL 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           ++L  +     E    D A+L    I +E   V ++  G+I+     S + S L     +
Sbjct: 480 SELQDQ----AETIEIDTASL----IVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L    +A TT  +LL +  G     P   L   R    GE + Q L++ + N++I+
Sbjct: 532 DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEII 591

Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VT 657
            A + ++        V+  G    VE  E     T K K+  + K+   E + + V  V 
Sbjct: 592 FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVV 651

Query: 658 GDHVAVVGENRKLLIFSIDQIP 679
            D + ++ E    L F+I+++P
Sbjct: 652 LDDIMLMTEKGYALRFNIEEVP 673


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 244/779 (31%), Positives = 419/779 (53%), Gaps = 49/779 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+     ++E  ++++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G  +  IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGNRT-VIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ ++F  S ++  F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLFKHSQLQANFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           +L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S   + E Q DAIL ++LR L  LE  +I  EL  +  E   + ++L S ++Q   + 
Sbjct: 417 LMSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKAILASPERQRTIVR 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+ E+ E +        RR+   ++  A     ++ +I +E + + I++ G+       
Sbjct: 477 DELTEIVEKYGDE-----RRS---QIIAATGDVSEEDLIARENVVITITSTGYAKRTKVD 528

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
             +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    
Sbjct: 529 AYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTF 641
           G+ +  L++    + I        Y+    L++ ++ G    V++S ++   + R G   
Sbjct: 589 GQHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGR---VKKSRLLDYESARSGGLI 645

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDGG 696
               +E+   +   + G  D + +V E  + + F+ D  Q+  M R   GV+   ++D  
Sbjct: 646 AINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDN- 704

Query: 697 ISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              ++   +        + ++G    R+  +     G RGG+G +  K  P+ G+ +S+
Sbjct: 705 -DQLLSMSVVRDGEFLLVATSGGYGKRTPLEDYSTQG-RGGLGVVTFKYTPKRGRLVSA 761


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  359 bits (922), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 227/654 (34%), Positives = 356/654 (54%), Gaps = 81/654 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA
Sbjct: 49  MTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 108

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG V+G  HPHGD ++YD++VRLAQPF  RY ++ GQGNFG++DGDS AA RYTE+R+
Sbjct: 109 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRL 168

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +D D VDF   Y+E   EP V P++ PNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 169 TRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNL 228

Query: 197 QEICEAALALID-NPEIS---IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            E+  A ++L+  +P+ +   +E +L++++GPDFPTGG +   R +I ++YR GRG F +
Sbjct: 229 TEVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLF-GRTNIPQAYRTGRGRFMM 287

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDESAED-V 309
           RA+  +E +  G   IVV EIPYQV KS+LIE+IAEL+    I  +  ++ RDES  D +
Sbjct: 288 RAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDGM 347

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K R  +  +++  +   + M+  F +    +  G+ P+ +PLD  ++ +L HR 
Sbjct: 348 RIVIGIK-RGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQ-PKELPLDKAIRAFLDHRI 405

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------- 412
           EV+ RR++F +     R  IL GL IA  ++D++I IIR                     
Sbjct: 406 EVVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTI 465

Query: 413 -------------------------PKPVMV---SRFSLTENQVDAILNLRLRSLRKLEE 444
                                    P P      +   L   Q+DAIL L+L  L +L  
Sbjct: 466 TLRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSI 525

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  EL  +     + +S+LNS  +    IA E+ ++++ +        RRT   +   
Sbjct: 526 DELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDP-----RRTIILD--- 577

Query: 505 ADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIAL 555
            + A L  + +I  E + V +SN G++        R  +        +  ++ D +   +
Sbjct: 578 -ETAELGLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLI 636

Query: 556 HAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
              T   +L  +  G     K Y +P   +    G G+A+  L+DL   + +VT
Sbjct: 637 IESTHAYLLCFTNSGRVYWLKIYEIPDTGIT---GKGKAMASLVDLQPGEKVVT 687


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/630 (33%), Positives = 364/630 (57%), Gaps = 22/630 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFHDLPLEEVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++   EPVV P+ +PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSPIASELLRDLDKKTVEFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  IDNP +++++L+  + GPDFPTGGII +  E I ++Y  G+G   VR 
Sbjct: 185 HLGEVIDATIMRIDNPSVTVDELMTVVKGPDFPTGGII-QGVEGIKKAYETGKGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VE++  G   IV+TE+PY+V K+ L++KI EL   K++  + ++RDE+      V+ 
Sbjct: 244 LAEVEDIRGGKQQIVITEVPYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  F  NM  +   R P +M L   L  ++ H++EV+  
Sbjct: 304 ELKKEADANGILNYLYKNTDLQITFNFNMVAIYKKR-PTLMGLPHFLDAYIDHQKEVISN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F +     R  +++GL+ A   +DE+IA IR ++DK   K  ++++F+ TE Q +AI
Sbjct: 363 RSRFELNRAKERQHVVEGLMKALSILDEVIATIRASKDKRHAKDNLIAKFTFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E D L  +  +++++L S K+ ++ I  +++ VK++++    
Sbjct: 423 VSLQLYRLTNTDITALQAEADELAKKVAELEAILGSEKKLFSVIKSDLKRVKKLYTNG-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RR+   +     K  L + MI  E + V ++  G+++  SL+S S  +      KE 
Sbjct: 481 ---RRSKIQDQIEEIKINL-EVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFGMKET 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +   L  +TT  +LL +  G    LP   L  +  +  G+ +  ++ ++ ++ I+ A 
Sbjct: 537 DRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDIRWKDMGQHVANIVPIDRDESIIKAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++    LL V+  G   +V+++E+ A
Sbjct: 597 PVSNFEDPNFLLFVTRNG---MVKKTELSA 623


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 233/713 (32%), Positives = 393/713 (55%), Gaps = 54/713 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 13  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +A + +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN
Sbjct: 133 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+++ + I ++YR G+G   VR  
Sbjct: 193 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQT-QGIEDAYRHGKGIIPVRGV 251

Query: 256 WCVEEVGRGS------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
             +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES    
Sbjct: 252 VKIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTG 311

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++   +L E ++  + ++  F   M  L +   P+ + L  +L+E+L  R
Sbjct: 312 MRVVIELKRDAVAKTVLRE-LYKKTALQQNFGAIMLAL-VDNQPRQLSLRQLLEEFLKFR 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
              L R+ ++ ++    R+ +L+GLLIA  ++D +I I+R+       K       +L+E
Sbjct: 370 EHTLTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQELNLSE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  
Sbjct: 430 AQANGILAMPMRRLTGLERQKLQAEYDELAGRINELENLLNNRPEFLKVLKKELRSLKRK 489

Query: 486 FSKSTDLGRRRTTFCEV----SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL- 540
           +       +RRT   +     S +  A   +     + +T   S++   ++ +  S+   
Sbjct: 490 YGD-----QRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTTATSDKETEKTTRPFSLFTP 544

Query: 541 --------------SALHFKEGDSL----KIALHAHTT---DRILLLSTDGKAYTLPAGN 579
                           + ++  D+      +++++      ++ ++++  GKAY +   +
Sbjct: 545 QTPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQEREQFIVITDIGKAYPVNVAD 604

Query: 580 LLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIA 633
           +         +  L+     +D   +V+ F    T     LL+++++G    V+ SE+  
Sbjct: 605 VPPIDIQPIPLLSLLSKTAQRDSKKVVSLFFLSDTTDNKDLLLLTNQGKIKRVQLSELEG 664

Query: 634 NTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSI--DQIPEMSR 683
            T +G   +K+  ++ ++ V +   G+ VA+   + ++L F +  + IP M R
Sbjct: 665 LTNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGR 717


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 249/782 (31%), Positives = 410/782 (52%), Gaps = 51/782 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+ +     + + +  + L   +   Y+ YA+S I  RA+P++RDG KPVHRR+I+AM +
Sbjct: 3   DDTNGGGETLFDRITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAMYD 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD ++YD+L R+AQP+  RYPL+ GQGNFG+   
Sbjct: 63  NGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSRGN 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE R+T +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+SGI
Sbjct: 123 DGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSSGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN+ E+ EA   L++NPE     ++E  ++ + GPDFPT G+IV   + I
Sbjct: 183 AVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIV-GDQGI 241

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R +  +EE G     I++TE+PY V    L+  IAE +   +I  + 
Sbjct: 242 KDAYTTGRGSIRMRGKSTIEEEG-SRQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGIA 300

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            I DES++ V  RIV+  K R   P +++ +++  S ++T F  NM  + +  VP+ + L
Sbjct: 301 KIDDESSDRVGMRIVVTLK-RDAVPRVVLNNLYKHSQLQTSFGANMLSI-VDSVPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +L+ ++ H+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 359 DQMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +     + + Q DAIL ++LR L  LE  +I  EL  +      + ++L S ++Q   
Sbjct: 419 EGLKDLLDIDDIQADAILAMQLRRLAALERQKIIDELAEIEETIADLKAILASPERQRAI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E F        RRT   E+  A     ++ +I +E + V I++ G+     
Sbjct: 479 VRDELTEIVEKFGDE-----RRT---EIVGATGDVSEEDLIARENVVVTITSTGYAKRTK 530

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGR 584
               RS +     +     K+ D ++      T D I+ L+  G+ Y L A  L   S  
Sbjct: 531 VDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKT 640
             G+ +  L++    +   +I+    ++    L++ + +G    V++S +   +T +   
Sbjct: 591 ARGQHVANLLEFQPGEQIAEIIQIQSFEDAPYLVLATQQGR---VKKSRLTDYDTARSGG 647

Query: 641 FLKVSSEEKMKLVVK--VTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG----KGVRLQS 691
            + ++  E  KL+     TG D + +V E  + L F+ D   +  M R     KG+R + 
Sbjct: 648 LIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPMGRATAGVKGMRFRG 707

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                   V+    C  +      G+     E  + G    RG +G +  K  P+ GK +
Sbjct: 708 EDQLLALTVVHDDSCLLVATSGGYGKRTPMEEYPVKG----RGTMGVVTFKYDPKRGKLI 763

Query: 752 SS 753
            +
Sbjct: 764 GA 765


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/524 (39%), Positives = 314/524 (59%), Gaps = 15/524 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE++    ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL       
Sbjct: 15  EEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMGLRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           K ARIVGEV+G+LHPHGD ++YD+LVR+AQP+  R P++ G GNFG+  G D  AA RYT
Sbjct: 75  KCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGGDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   +DED VDF+  Y+  + EP V P+  P+L+ NGT+GIAVGMAT+  
Sbjct: 135 EARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTGIAVGMATNCA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   LI +P  ++E L+ ++ GPD PTGG IV   E + ++Y  GRG FR+
Sbjct: 195 PHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIV-GLEGVRDAYETGRGTFRM 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   VE +      IVVTE+PY V   +++E+I  L+  K++  + DI+D  +    +R
Sbjct: 254 RATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKDLTDRENGLR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ L+E ++  + ME  F +N   L  G+ P+ + L  +L+ +L HR +
Sbjct: 314 LVIEVKN-GFVPEALLEQLYKHTPMEDTFGINAVALVDGQ-PRTLSLKELLQVFLDHRFD 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ +++GLLIA L+IDE+I +IR+ D     K  ++S F L+E Q
Sbjct: 372 VVRRRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKERLISVFDLSEVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL++ LR L K    +++ E D+L    E++D+++N  K +W  ++ E+ E+ + + 
Sbjct: 432 ADYILDMPLRRLTKFSRIELEKEQDDLRRTIEELDAIINDDKLRWKVVSDELGEIAKTYG 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI 530
                  RRT   E +          + +  +P  V +S+ G +
Sbjct: 492 NP-----RRTVLLESAGTAVTAAAVPLEVADDPCYVYLSSTGLL 530


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 238/707 (33%), Positives = 387/707 (54%), Gaps = 54/707 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S    ++  ++ YAL+ + +RA+PD+RDG KPVHRRI++AM ++G+    A+KKSA
Sbjct: 5   IETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+S+V+ AQ FV+  PLI G GNFG++DGDSAAA RYTEAR+
Sbjct: 65  RIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + VA  ++Q + +  VDFRD ++  + EPVV P+K PNLL NG  GIAVGMA   P H V
Sbjct: 125 SPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHGV 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
             + +  +A  D  +I IE L++ I  PD+P+GGII    E + + YR G G   +RA+ 
Sbjct: 185 NSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNE-LRDLYRTGIGKAVIRAKI 243

Query: 257 CVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            +E+ G G   +VV EIPY     K+ L  K+  ++I K++  + ++ DES +D +RIVL
Sbjct: 244 DIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIVL 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + +D D L+  ++  + +++       VL  G VP  + L    K +   ++E+  
Sbjct: 304 EVK-KGVDIDNLLNKLYSKTPLQSSESYQYLVLVNG-VPTTINLKDYCKHYFDFQKEITR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           +R  + +     R EIL+GL+ A   +D II ++R   K K   V               
Sbjct: 362 KRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISFKTK 421

Query: 419 ------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +F+ TE Q  AIL++RL+ L  LE  Q+  E   +LAE E+ + +L S K+  
Sbjct: 422 KHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLGSEKEML 481

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIR 531
             I   +R  K+      D GR R T  +    +K T++    I++E + V+I   G+ +
Sbjct: 482 KVIKKYLRGFKK------DFGRERRTEIQ----EKKTIEYVEEIKEEDVWVLIDKFGYTK 531

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589
           S+ + SV+ S+         K  +    T ++ + +  G+ Y +   ++  +  +  G  
Sbjct: 532 SVDTISVERSSEETL--SEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKGVP 589

Query: 590 IQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           IQ L  +  N+    +T      T ++++++  G       SE+I++    ++ +  +  
Sbjct: 590 IQRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELISS----RSVVVATKL 645

Query: 648 EKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           E+   V+++T      + V V  +   +L FSI++IP + +  KGV+
Sbjct: 646 EEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVK 692


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/395 (44%), Positives = 266/395 (67%), Gaps = 3/395 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKSAR+V
Sbjct: 27  VNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSARVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM ++
Sbjct: 87  GDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRMDRL 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN+ E+
Sbjct: 147 AEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNMGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L LID+P+ ++  L+++I GPDFPT   I   RE I  +Y  GRG   +RAR  +E
Sbjct: 207 IDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT-GREGIARAYETGRGQITIRARTEIE 265

Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +     R
Sbjct: 266 TSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIELKR 325

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                +++ ++F ++ +ET F   M  +  G+ P+ + L  +L  +++HRR+V+ RR+ +
Sbjct: 326 DAISGVVLNNLFSMTPLETTFGAVMLAIDGGQ-PRTLNLKELLDRFISHRRDVITRRTRY 384

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            ++    R+ I++GLL+A   ID ++++IR    P
Sbjct: 385 ELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDP 419


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 242/773 (31%), Positives = 410/773 (53%), Gaps = 55/773 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+ M + G     ++ K
Sbjct: 12  DRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDSGYRPERSYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VGE +  LHPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+   D  AA RYTE 
Sbjct: 72  SAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSPGNDGPAAMRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT +A  +++ + E+ V+F   Y+ +  EP + PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 132 KMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSGGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ EA   ++DN     + +++ ++E + GPDFPT G+IV     I ++Y  GRG  
Sbjct: 192 NLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIV-GDTGIKDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE+G     IV+TE+PYQV     I  IA+ I   ++P    I DES++ V 
Sbjct: 251 RMRGVTEIEEIG-SRQVIVITELPYQVNPDNFIANIADHIANGKLPGASRIDDESSDRVG 309

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ +++  S +ET F  NM  +  G VP+ + LD +L+ ++ H+
Sbjct: 310 MRIVVSLK-RDAVPRVVLNNLYKHSQLETNFSANMLSIVDG-VPRTLRLDQMLRYYVKHQ 367

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  ++    + E
Sbjct: 368 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARTGLIELLDVDE 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL+++LR L  LE  +I  +L  +  +   +  +L S ++Q   +  E+ E+ E 
Sbjct: 428 IQANEILSMQLRRLAALERQKIVDDLAEIERQIADLKDILASPERQRAIVGDELAEIVER 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539
           +        RRT       A     ++ +I +E + V I++ G+ +  K  +        
Sbjct: 488 YGDD-----RRTRLIA---ATGDVSEEDLIARENVVVTITSTGYAKRTKVDAYKAQKRGG 539

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +     K+ D +K      T D IL  +  G+ Y L A  L  +GR   G+ +  L++
Sbjct: 540 KGVRGAELKQDDVVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAGRTARGQHVANLLE 599

Query: 596 LNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMK 651
               +    ++    Y+    L++ + +G    V++S +    + +    + ++  E  +
Sbjct: 600 FQPEERIAQVIQIHSYEDAPYLVLATREGR---VKKSRLTDYESARSAGLIAINLNEGDQ 656

Query: 652 LVVKVTG---DHVAVVGENRKLLIFSID--QIPEMSRG----KGVRLQSYKDGGISDVIC 702
           L+        D V +V E  + + F+ D  Q+  M R     KG+R +     G   ++ 
Sbjct: 657 LIGAALASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRFR-----GDDQLLA 711

Query: 703 FKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +        + ++G    R+        G RGG+G +  K  P+ GK + +
Sbjct: 712 MTVVHDNDFLLVATSGGYGKRTAIGEYATQG-RGGLGVMTFKYTPKRGKLIGA 763


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 208/510 (40%), Positives = 314/510 (61%), Gaps = 15/510 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NGT+GIAVGMAT++P H
Sbjct: 138 RLAAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGMATNMPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NP  ++E+++ +I GPD PTGG IV   + + ++Y  GRG F+ RA
Sbjct: 198 NLVEVIAAARHLIANPGATLEEIMRFIPGPDLPTGGRIV-GLDGVRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  VE++      +VVTE+PY V   ++IEKI + + +K++  + D+ D  +    +R+V
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRNHGLRLV 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P+ +++ ++  S ME  F +N NV  +   PQ + L  +L+ ++ HR  V+
Sbjct: 317 IELKN-GFNPNAVLQQLYRYSPMEDSFGIN-NVTLVDGQPQTLGLLQLLQVYVEHRLNVV 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+SFR+     R+ +++GLLIA ++IDE+I IIR+ D+       ++S + LTE Q +
Sbjct: 375 RRRTSFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMSIYDLTEIQAN 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    +++ E D L  E E ++++L S +   + ++ E+  + E +   
Sbjct: 435 YILELRLRQLTKYSRLELEKEQDELRREIEALEAILASDELLRDLVSGELAVIAEKYGTP 494

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                RRT   E S A   T+  A+    P
Sbjct: 495 -----RRTVLLE-SEAVSPTVAAALAASVP 518


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 350/605 (57%), Gaps = 19/605 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           ++P+ +++ L++ I GPDFPTGGII +  + I ++Y  G+G   +R +  VE V  G   
Sbjct: 198 ESPDCTVDDLMQVIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEVESVRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++T +  NM V    R P +M L  IL  +++H++EV+  RS F +Q    R 
Sbjct: 317 FLYKNTDLQTTYNFNM-VAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IR   ++   K  ++S+F+ TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSVLDEVIAVIRASSDKKDAKQNVMSKFTFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     RR+   E   
Sbjct: 436 TALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D L      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRLIHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+ +  +I ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLLFTNKGSYVYCPVHQLPDIRWKDMGQHVTNIITIDRDETIVKAIPVKEFDPSSYLLF 609

Query: 617 VSSKG 621
           ++  G
Sbjct: 610 MTKNG 614


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 223/689 (32%), Positives = 389/689 (56%), Gaps = 30/689 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L  +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLADI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   +EKL+E++ GPDFPTG II +  + I ++Y  G+G   VR+R  +E++  G   
Sbjct: 183 DHPTAKLEKLMEFLPGPDFPTGAII-QGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES    +RI +  K  S D   ++
Sbjct: 242 IVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDS-DEQTIL 300

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  RS F  +  ++R
Sbjct: 301 NYLYKYTDLQINYNFNMVAID-NFTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKR 359

Query: 387 VEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+ L+L  L   +
Sbjct: 360 LHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNTD 419

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFCE 501
              +++E   L  + + + +++   +  +N +  E+REVK+ F   + ++L  +     E
Sbjct: 420 IVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQFGNPRLSELQDQ----AE 475

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
               D A+L    I +E   V ++  G+I+     S + S L     ++ D L    +A 
Sbjct: 476 TIEIDTASL----IVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFVYDS--TCK 613
           TT  +LL +  G     P   L   R    GE + Q L++ + +++I+ A + ++     
Sbjct: 532 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGT 591

Query: 614 LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDHVAVVGENRK 669
              V+  G    VE  E     T K K+  + K+   E + + V  V  D + ++ E   
Sbjct: 592 YFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGY 651

Query: 670 LLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            L F+I+++P + ++  GV+  + KDG +
Sbjct: 652 ALRFNIEEVPIIGAKAAGVKAVNLKDGDV 680


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 244/779 (31%), Positives = 418/779 (53%), Gaps = 49/779 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+     ++E  ++++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G  +  IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGNRT-VIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ ++F  S ++  F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLFKHSQLQANFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           +L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S   + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L S ++Q   + 
Sbjct: 417 LMSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILASPERQRTIVR 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+ E+ E +        RR+   ++  A     ++ +I +E + + I++ G+       
Sbjct: 477 DELTEIVEKYGDE-----RRS---QIIAATGDVSEEDLIARENVVITITSTGYAKRTKVD 528

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
             +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    
Sbjct: 529 AYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTF 641
           G+ +  L++    + I        Y+    L++ ++ G    V++S ++   + R G   
Sbjct: 589 GQHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGR---VKKSRLLDYESARSGGLI 645

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDGG 696
               +E+   +   + G  D + +V E  + + F+ D  Q+  M R   GV+   ++D  
Sbjct: 646 AINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDN- 704

Query: 697 ISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              ++   +        + ++G    R+  +     G RGG+G +  K  P+ G+ +S+
Sbjct: 705 -DQLLSMSVVRDGEFLLVATSGGYGKRTPLEDYSTQG-RGGLGVVTFKYTPKRGRLVSA 761


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 222/696 (31%), Positives = 401/696 (57%), Gaps = 26/696 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  ID+P IS+ +L++YI GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 183 NLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGG-IIQGIDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M L  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQITYNFNMVAISDGR-PKLMGLREIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+++ +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V  F  TE Q +A
Sbjct: 360 NRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S 
Sbjct: 420 IVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E   ++    ++ ++  E + + ++  G+I+   + S + S +     KE
Sbjct: 479 -----RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLKE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D  L+ +  G+   +P   +   R    G+ +  ++ L  N+ I+  
Sbjct: 534 GDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIIDV 593

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGDH 660
           F    +D      +++++          +   TR  K  +  K+ +E+++  V+++T + 
Sbjct: 594 FNEKTFDGKA-FYIIATRNGMIKKSNQSLFKTTRFNKPLIATKLKNEDEVVNVLRITQEQ 652

Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           + +V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 653 MIIVITHKGMSLTYSTEELSDTGLRAAGVKSINLKD 688


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 206/538 (38%), Positives = 322/538 (59%), Gaps = 24/538 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+ +M E+GL       K
Sbjct: 16  ENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMDELGLTPNKNHVK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VGEV+GK HPHGD ++YD+LVR+AQ F  R PLI G GNFG++D    AA RYTEA
Sbjct: 76  SSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLD-QGPAASRYTEA 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   +  ++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAVGMAT++  H
Sbjct: 135 RLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASGIAVGMATNMAPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ LI NP+ S++ L+ ++ GPD P GG I+   + I ++Y  GRG FR RA
Sbjct: 195 NLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGGRII-GLDGIRDAYLTGRGTFRTRA 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
              +E V      IVVTE+PY V   ++I+K+ +L+  K++  + D++D S     +R+V
Sbjct: 254 TATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKDLSDRHHGLRLV 313

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ +   R +V+
Sbjct: 314 IELKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PRTLGLKELLRVYTDFRIDVV 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR++ R+   + R+ ++ GLLIA L+IDE+I IIR+ D     +  ++  F L+E Q  
Sbjct: 372 RRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQVFDLSEAQAT 431

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+L+LR L K    +++ E D L AE EK+ ++L   K   +++ C+     E+ + +
Sbjct: 432 YILDLQLRRLTKFSRLELEKEADELRAEIEKLRAILADVK-LLHKVVCD-----ELLAVA 485

Query: 490 TDLGR-RRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            + G  RRT   E      V++    +     I  +P  V++S+ G I   ++ S DL
Sbjct: 486 KEFGTPRRTVLLEGNGTQAVAKTASKSSMPLEIPDDPCWVLLSSTGLI--ARTTSADL 541


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/523 (38%), Positives = 307/523 (58%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE++    +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M++MG+       
Sbjct: 15  EEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMNDMGVRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K ARIVGEV+GKLHPHGD ++YD+LVR+AQP+  R P+I G GNFG+  GD  AAA RYT
Sbjct: 75  KCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPGGDDPAAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + ED VDFR  Y+  + EP V P+  PNLL NG +GIAVGMAT++ 
Sbjct: 135 EARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGATGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+++I GPD PTGG IV   + I ++Y  GRG F++
Sbjct: 195 PHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIV-GLDGIRDAYETGRGSFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E  GR    IV+TE+P+ +   ++IE++  L+ +K+I  + D++D  +     R
Sbjct: 254 RATTRIETFGR-RKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLKDLTDRQHGTR 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ ++ +E  F +N NV  +   P+ + L  +L+ +L HR +
Sbjct: 313 LVIEVKN-GFVPEAVLEQLYKMTPLEDSFGIN-NVALVDGQPRTLGLKELLEVFLGHRYD 370

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR      R+ ++ GLLIA L+IDE+I +IR   N  + K  ++S F L++ Q
Sbjct: 371 VVRRRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMSVFDLSQPQ 430

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL++ LR L K  + +++ E D L A  E +DS+L   +     ++ E+ EV + F 
Sbjct: 431 AEYILDMALRRLTKFSKIELEKERDELQATIEYLDSILGDDEMLRKVVSDELGEVAKTFG 490

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                  RRT     +           +  +P   ++S+ G +
Sbjct: 491 TP-----RRTVLLASAGTPALEAMSLEVADDPCFAMLSSTGLL 528


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/640 (32%), Positives = 365/640 (57%), Gaps = 23/640 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ ++E L++Y+ GPDFPTG II+ ++  I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDATLEDLMKYVKGPDFPTGAIIMGTK-GIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   + S A     ++A++  E + V+IS  G+++  S++S+ S D +     
Sbjct: 481 -----RRTQISQES-AKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            FV D   +    L+ ++ G    +E    +AN +  +T+
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLE----LANLQPTRTY 630


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332204008|gb|EGJ18075.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47368]
          Length = 811

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 389/697 (55%), Gaps = 33/697 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558
           A   D A+L    I +E   V ++  G+I+     S   S L     ++ D L     A 
Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612
           TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+   V   +D   
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 591

Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
                +  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N 
Sbjct: 592 TYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNG 651

Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 652 YALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 339/558 (60%), Gaps = 18/558 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP+H+++E+ +A +A++
Sbjct: 138 EKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDATIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           + P+I +E+++ +I GPDFPTGG+I+   E I ++YR G+G   +R++  ++ +  G   
Sbjct: 198 EKPQIELEEIMTFIKGPDFPTGGLIM-GGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           +V+TEIPYQV KSRL+  +  + + K++  + ++RDES  + +RIV+  K  + D + ++
Sbjct: 257 LVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEA-DAEGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +   +D++  +  NM V  + + P  + L  IL+ ++AH+REV+  R  F ++  + R
Sbjct: 316 AYLLKKTDLQVAYNFNM-VAIVNKAPHQLGLKSILEAYIAHQREVVTNRIKFELEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DE+IA I   +N    +  +   F  +E Q D+IL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQADSILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ EL ++  +  +  S+L+S ++  + I  E+ E++E +     + RR     EV 
Sbjct: 435 ITTLEKELADIQKKITQYRSILDSDRKLISLIRKELLEIREKYG----IDRRSEIQGEVE 490

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + M+  E + + +S  G+++     S      + S    KEGD +   L  +
Sbjct: 491 EI-KVNL-EVMVAAEDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVKEGDYITQFLDVN 548

Query: 559 TTDRILLLSTDGKAYTLP 576
           T D +L+ +  G+ + LP
Sbjct: 549 TLDVLLVFTQRGQYFLLP 566


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 205/529 (38%), Positives = 315/529 (59%), Gaps = 15/529 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + T V + V  + +   +   +L YA S I  RA+PD RDG KPV RRI+  M E+GL 
Sbjct: 9   QTPTQVADTVIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMDELGLR 68

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KS+R+VGEV+GK HPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D  A
Sbjct: 69  PDRGYVKSSRVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFGSLD-DGPA 127

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM   A L+ Q +DED VD    Y+++  +P V P+ +PNLL NG SGIAVGM
Sbjct: 128 ASRYTEARMAPAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNGASGIAVGM 187

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+I  HN+ E+  AA  L+DNP  ++E L+ ++ GPD P GG IV   + I ++YR GR
Sbjct: 188 ATNIAPHNMGEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGGRIV-GLDGIRDAYRTGR 246

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ES 305
           G FR RA   +E V      IVVTE+PY V   ++I K+   + AK++  + D++D  + 
Sbjct: 247 GSFRTRATVRIENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIADVKDLTDR 306

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            + +++V+  KN   +P+ ++  ++  + ME  F +N   L  G+ P+ + L  +L  ++
Sbjct: 307 HKGLQLVIEVKN-GFNPEAVLAQLYKQTPMEESFGINNVALVDGQ-PRTLGLRELLAVYV 364

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R EV+ RR+ FR++    R+ +++GLL+A L+IDE+I +IR+ D   + +  ++  F 
Sbjct: 365 DFRCEVVRRRTEFRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRLMQVFD 424

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL L+LR L K    ++++E D+LL   E++ ++L         ++ E+  V
Sbjct: 425 LSELQANYILELQLRRLTKFSRIELETERDDLLRAIEELQAILADEALLRRVVSDELAAV 484

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI 530
            +  +       RRT   E   A   T    + +  +P+TVV+S  G +
Sbjct: 485 AKEHATP-----RRTVLLESEAAAAMTPAAPLEVADDPVTVVLSATGLV 528


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 322/569 (56%), Gaps = 32/569 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L YA S I  RA+PD RDG KPV RRI+  MS+MGL       KSAR+VGEV+GK
Sbjct: 29  MEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMGLRPDRGHVKSARVVGEVMGK 88

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
           LHPHGD ++YD+LVR+AQPF  R P++ G GNFG++D D  AA RYTEAR+   A ++  
Sbjct: 89  LHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DGPAAPRYTEARLAPAALVMTT 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMAT++  HN+ E+  AA  
Sbjct: 148 GLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAVGMATNLAPHNLIEVVAAARF 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ S+E L+ ++ GPD PTGG IV   E I ++YR GRG F+ RA   VE V    
Sbjct: 208 LVANPKASLEDLMRFVPGPDLPTGGKIV-GLEGIRDAYRTGRGSFKTRATVRVENVTPKR 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKR---IPLLEDIRDESAEDVRIVLFPKNRSLDP 322
             +VVTE+PY V   ++IEKI E + AK+   I  + D+ D S   +R+V+  K    +P
Sbjct: 267 KGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTDRS-HGLRLVIEIKT-GFNP 324

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           + ++E ++  + ME  F +N   L  G+ P+ + L  +L  W+ HR +V+ RRS FR+  
Sbjct: 325 EAVLEQLYRYTPMEDSFGMNNVALVDGQ-PRTLGLREMLSVWVDHRIDVVRRRSQFRLTK 383

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSL 439
              R+ +++GLL+A ++IDE+I +IR+ D        +   F L+E Q + IL LRLR L
Sbjct: 384 RLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRLREVFDLSEAQSEYILELRLRRL 443

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K    +++ E   L+ E E++ ++L         ++ E+ EV +++        RRT  
Sbjct: 444 TKFSRIELEKEQSALVEEIEQLRAILGDDALLRRVVSDEMAEVAKVYGTP-----RRTIL 498

Query: 500 CEVS-------------RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            + +             R    +L+   IE  P  V++S+ G +      +  +   H  
Sbjct: 499 LDSAGGGVTGLPGPSSPRGAPVSLE---IEDTPCWVLLSSTGLLARTSDETEPVRDDHRH 555

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             D L   + A     +  L++ G+   L
Sbjct: 556 AHDVLASGVLASVRAEVGALTSAGRVVRL 584


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 334/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+  RG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTSRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 237/758 (31%), Positives = 410/758 (54%), Gaps = 56/758 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KSA
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN+
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR++ 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      IVV+EIPY+V K++L+++I EL + KR+  + ++RD+S  +   ++   
Sbjct: 243 KIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  +REV+ +R+
Sbjct: 303 KRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQREVIKKRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+ 
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIVA 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +       
Sbjct: 422 LQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP---- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGDSL 551
            RRT   +     K +    +I  E + V++S+ G+I+  S++S+    +    K+ D  
Sbjct: 478 -RRTEIQDKVATIKIS-TDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDYP 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYD 609
                 +  D + + ++ G     P   +   R    GE I   I L+++++I+  F + 
Sbjct: 536 IFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFS 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSS-EEKMKLVVK--VTGDHV 661
           S      +  KG   I  +   I  T+      G+T+ K +   EK+K      V  D++
Sbjct: 596 S------LKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYL 649

Query: 662 AVVGENRKLLIFS---------IDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           A +  + KLL+ S         ID++P   +R  GV+ Q+  DG   DVI       L  
Sbjct: 650 ADLDASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADG---DVIT-----NLQL 701

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++         ++D++  + +RG    L  K  P + +
Sbjct: 702 VN---------DDDVIAIVTQRGAFKKLAVKEIPATSR 730


>gi|332670664|ref|YP_004453672.1| DNA topoisomerase [Cellulomonas fimi ATCC 484]
 gi|332339702|gb|AEE46285.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas fimi ATCC 484]
          Length = 824

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/529 (38%), Positives = 310/529 (58%), Gaps = 22/529 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  M++MGL     + K
Sbjct: 17  EKIVDIDVASEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMADMGLRPDRPYVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD  +YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDAPIYDAMVRLAQSFALRLPLVDGHGNFGSLD-DGPAAPRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +  G+DED VDF   Y+ + ++P V P+  PNLL NG +GIAVGMAT++  H
Sbjct: 136 RLAPSATAMTTGLDEDVVDFVPNYDNKLTQPEVLPAAIPNLLVNGAAGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +PE ++++L+ ++ GPD PTGG IV   + + ++YR GRG F+ RA
Sbjct: 196 NLVEVVAAARHLVLHPEATLDELMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRGAFKTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              VE V      IV+TE+PY V   ++IEKI E + +K++  + D  D  +    +R+V
Sbjct: 255 TAVVENVTPRRKGIVITELPYMVGPEKVIEKIKEGVQSKKLSGISDAVDLTDRQHGLRLV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K     P+ ++E ++  + +E  F +N   L  G+ P+ + L  +L+ W+ HR  V+
Sbjct: 315 IEVKT-GFHPEAVLEQLYRYTPLEDSFSINNVALVDGQ-PRTLGLRELLQVWVDHRVAVV 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS  R+     R+ +++GLL+A L+IDE+I +IR  D  +     + + F L+E Q +
Sbjct: 373 RRRSQHRLTKRQERLHLVEGLLVAILDIDEVIQVIRTSDDAESARTRLQTVFDLSELQAE 432

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    +++ E + LLAE  +++++L   ++    ++ E+ EV   +   
Sbjct: 433 YILELRLRRLTKFSRLELEREKEQLLAEIAELEAILADDRRLRTLVSDEMAEVAATYGTP 492

Query: 490 TDLGRRRTTFCEV--------SRADKATLQQAMIEKEPITVVISNRGWI 530
                RRT   E         + A +A+     IE  P   ++S  G +
Sbjct: 493 -----RRTILLESAGGSSVTGAPAARASATPLEIEDSPCWALLSGTGLL 536


>gi|308069401|ref|YP_003871006.1| topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 340/558 (60%), Gaps = 18/558 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A++KSA+ VG+V+G  H
Sbjct: 18  DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYRKSAKTVGDVMGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP+H+++E+ +A++A++
Sbjct: 138 EKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDASIAVM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           + PEI +E+++ +I GPDFPTGG+I+   E I ++YR G+G   +R++  ++ +  G   
Sbjct: 198 EKPEIELEEIMTFIKGPDFPTGGLIM-GGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           +V+TEIPYQ+ KSRL+  +  + + K++  + ++RDES  + +RIV+  K  + D + ++
Sbjct: 257 LVITEIPYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEA-DAEGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +   +D++  +  NM V  + + P  + L  IL+ ++AH+REV+  R  + ++  + R
Sbjct: 316 AYLLKKTDLQVAYNFNM-VAIVNKAPHQLGLKSILEAYIAHQREVVTHRIQYELEKAEDR 374

Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             +L+GL+ A   +DE+IA I   +N    +  +   F  +E Q D+IL L+L  L  LE
Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQADSILTLQLYRLTNLE 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ EL ++  +  +  S+L S ++  + I  E+ E++E +     + RR     EV 
Sbjct: 435 ITTLEKELGDIQKKIAQYRSILESDRKLISLIRKELLEIREKYG----IDRRSDIQGEVE 490

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558
              K  L + M+  E + + +S  G+++     S      + S+   KEGD +   L  +
Sbjct: 491 EI-KVNL-EVMVGAEDVLLTLSKDGYVKRTSMLSFTRSGGERSSSGVKEGDYVTQLLDVN 548

Query: 559 TTDRILLLSTDGKAYTLP 576
           T D +L+ +  G+ + LP
Sbjct: 549 TLDILLVFTQRGQYFLLP 566


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 306/499 (61%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G+G      +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +PD +++ +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DRDGMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I   ++    +  ++ R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E+DNL  E+E++  LL +  Q  + +  E++ +
Sbjct: 419 LNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERERLKLLLENRDQLLDAMVGELKTL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ FS       RRT   E
Sbjct: 479 KKRFSTP-----RRTRLVE 492


>gi|332202711|gb|EGJ16780.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41317]
          Length = 811

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 215/694 (30%), Positives = 389/694 (56%), Gaps = 27/694 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ + A+ +I
Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDVAVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++  +E++  G   
Sbjct: 183 DHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L++ 
Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  RS F  +  ++R+
Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDV 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             ++ E   L  +   + +++   +  +N +  E+REVK+ F+       R ++  + ++
Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSSLEDTAK 475

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHTTD 561
           A +  +  ++I +E   V ++  G+I+     S   S L     ++ D L     A TT 
Sbjct: 476 AIEIDI-ASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKTTQ 534

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTCKLL 615
            +L+ ++ G     P   L   R    GE + Q + +   N++I+   V   +D      
Sbjct: 535 HLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYF 594

Query: 616 VVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENRKLL 671
             +  G    VE  E     T + K+  + K+  + +++  V  +  D V +V +N   L
Sbjct: 595 AATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYAL 654

Query: 672 IFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
            F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 655 RFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 688


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/640 (32%), Positives = 364/640 (56%), Gaps = 23/640 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P  ++E L++Y+ GPDFPTG II+ ++  I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPNATLEDLMKYVKGPDFPTGAIIMGTK-GIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   + S A     ++A++  E + V+IS  G+++  S++S+ S D +     
Sbjct: 481 -----RRTQISQES-AKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            FV D   +    L+ ++ G    +E    +AN +  +T+
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLE----LANLQPTRTY 630


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 360/620 (58%), Gaps = 21/620 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAF 624
           A +  S  + L ++   N F
Sbjct: 593 ADIVTSFDQGLYLAVTQNGF 612


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/616 (36%), Positives = 356/616 (57%), Gaps = 42/616 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 51  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 110

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 111 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 170

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 171 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 230

Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +    +E LLE I GPDFPTG  ++ ++  I+E+YR GR
Sbjct: 231 PPHNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTK-GILEAYRTGR 289

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE++ 
Sbjct: 290 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSG 348

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+V+  K R     +++ +++  + ++  F  NM  +  G +P+ + LDG +  W+
Sbjct: 349 RTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLALDGFISAWV 406

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT- 424
            H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR   + + V V+R  L  
Sbjct: 407 DHQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIR---RSETVEVARSGLMK 463

Query: 425 -----ENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                E Q +AIL ++LR L  LE  +I+   +EL+  +AE + I   L +   Q   I+
Sbjct: 464 LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYKHI---LATPTVQREIIS 520

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530
            E++E+ + +        RRT        D +   + +I +E + V ++  G+I      
Sbjct: 521 TELQEITDKYGDD-----RRTEIMLGFDGDMS--MEDLIPEEEMVVTVTRGGYIKRTRID 573

Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586
             RS       +     +  D ++      T   +L L+  G+ Y   A  L  +GR   
Sbjct: 574 NYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAK 633

Query: 587 GEAIQLLIDLNHNQDI 602
           G+ +  L+ +  +++I
Sbjct: 634 GQHVANLLAMQPDEEI 649


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 360/620 (58%), Gaps = 21/620 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAF 624
           A +  S  + L ++   N F
Sbjct: 593 ADIVTSFDQGLYLAVTQNGF 612


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 352/613 (57%), Gaps = 36/613 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 60  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 119

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 120 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 179

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 180 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 239

Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +    +E LLE I GPDFPTG  ++ ++  I+E+YR GR
Sbjct: 240 PPHNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTK-GILEAYRTGR 298

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE++ 
Sbjct: 299 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSG 357

Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               R+V+  K R     +++ +++  + ++  F  NM  +  G +P+ + LDG +  W+
Sbjct: 358 RTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLALDGFISAWV 415

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT- 424
            H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR   + + V V+R  L  
Sbjct: 416 DHQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIR---RSETVEVARSGLMK 472

Query: 425 -----ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
                E Q +AIL ++LR L  LE  +I+ +   L     + + +L +   Q   I+ E+
Sbjct: 473 LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYNHILATPTVQREIISTEL 532

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531
           +E+ + +        RRT        D +   + +I +E + V ++  G+I        R
Sbjct: 533 QEITDKYGDD-----RRTEIMLGFDGDMS--MEDLIPEEEMVVTVTRGGYIKRTRIDNYR 585

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589
           S       +     +  D ++      T   +L L+  G+ Y   A  L  +GR   G+ 
Sbjct: 586 SQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAKGQH 645

Query: 590 IQLLIDLNHNQDI 602
           +  L+ +  +++I
Sbjct: 646 VANLLAMQPDEEI 658


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 246/714 (34%), Positives = 393/714 (55%), Gaps = 49/714 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  EDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSIDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 136 SRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ E  +ALI NPE++  +L + I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQIL-GRNGIQETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++T++PYQ  K+ LIE+IA+++  K++  + DIRDES  D
Sbjct: 255 RGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  NM  L  G  P  + L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGE-PVTLSLLRMLQVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+S+ ++  + R  +L GLL+A   +D II +IR   +    K  +     LTE
Sbjct: 374 VETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAKAKLQELHRLTE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++LL        +L +  + ++ I  E+ ++KE 
Sbjct: 434 VQADAILQMQLRRLTALEADKIRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKEK 493

Query: 486 FSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
           +        RRT   ++    D   L    I  E   V+++  G+++ +  +  + ++  
Sbjct: 494 YEAP-----RRTEILDLGGGIDDIDL----IANERSVVLLTETGYLKRMPVNQFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLI 594
              K G      + +K+ +  +  D +LL S  G AY+LPA  + +S R   G  +  L+
Sbjct: 545 TRGKSGTRSQGEEEVKLFISCNDHDNLLLFSDRGVAYSLPAYRVPISSRSAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEE 648
            +   + I +      +D    LL+++  G      +   S+I AN       + +S E+
Sbjct: 605 PIPREEAITSLLSVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIRAN-----GLIAISLED 659

Query: 649 KMKLV---VKVTGDHVAVVGENRKLLI---FSIDQIPEMSR-GKGVRLQSYKDG 695
              L    +  +GD V ++G  + + I    + D++  + R  +GVR  + + G
Sbjct: 660 GDALTWVRLAASGDSV-LIGSRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKG 712


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/481 (41%), Positives = 293/481 (60%), Gaps = 14/481 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  +L YA S I  RA+PD RDG KPV RRII+ M +MGL       KS+RIVG+V+GK
Sbjct: 14  MESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPHVKSSRIVGDVMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
           LHPH D ++YD+LVRL+Q FV R PL+ G GNFG +D D  AA RYTEAR+   A  ++ 
Sbjct: 74  LHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYTEARLDDAALTMIA 132

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           G+DED VDF   Y+   ++P V PS FPNLL NG SGIAVGMAT++  HN  E+  AA  
Sbjct: 133 GLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMAPHNPGEVIAAARH 192

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP+ ++ +L+ Y+ GPD PTGG I+   +SI E+Y  GRG FR RA    E +    
Sbjct: 193 LIENPQATVSELMRYVPGPDLPTGGRII-GLDSIREAYETGRGTFRTRATVKFENITARR 251

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IVVTE+PY V   R+IEK+ + + AKR+  +  I D S     +R+V+  KN   +P+
Sbjct: 252 KGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLRLVIGIKN-GFNPE 310

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++ HR  +  RR+ F++   
Sbjct: 311 AVLEELYRLTPMEDSFGINNVCLVEGQ-PRTLGLKPLLEVFVDHRISITRRRTVFQLGKA 369

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+ +++GLLIA L+IDE++ +IR+ D   + +  ++  F L+E Q   IL+L+LR L 
Sbjct: 370 KDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLMDVFDLSEIQATYILDLQLRRLT 429

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K    ++++E D L +  E +  +L+   +    ++ E++E  +          RRT   
Sbjct: 430 KFSRIELEAERDELKSRIEYLQGILDDDDKLRALVSDELQETSDRIDSP-----RRTVLV 484

Query: 501 E 501
           E
Sbjct: 485 E 485


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 234/700 (33%), Positives = 383/700 (54%), Gaps = 25/700 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  L   +  R+ +Y+   I++RA+PD RDG KPV RRI++AM E G  +  A++KSA+ 
Sbjct: 17  ATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNLWDKAYRKSAKT 76

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG VIG  HPHGD SVYD++VR++Q +  R+P I  QGN G+ID D AAA RYTEAR+ +
Sbjct: 77  VGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSIDDDPAAAMRYTEARLGK 136

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E +L+ +++D V +   +++   EP V P+ +PNLL NG +GIA G AT+IP HN+ E
Sbjct: 137 ISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITGIAAGYATNIPPHNLNE 196

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             +A +  I NP+ S+E+L+EY+ GPDFPTG  IV+  + I +++R G+G   +R++  +
Sbjct: 197 AIQATIYRIRNPKCSLEELMEYMHGPDFPTGA-IVQGIDGIKDAFRTGKGRIMIRSKVSI 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+  +    I+V EIPY+V KS +++KI E+ + K+I  + D+RDES  +   V+    +
Sbjct: 256 EQT-KTIQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVRDESDRNGLRVVIDIKK 314

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             D  L++  ++  +D++  +  N NV+++  + P  M L  +L  ++AHR EV+ +RS 
Sbjct: 315 DADAQLILNYLYKNTDLQVSY--NYNVVAIVNKRPVQMGLVAMLDAFIAHRVEVIEKRSR 372

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNL 434
           + +   ++R  IL+GL+ A   +DEIIA+IR ++DK   K  ++  FS +E Q +AI+ +
Sbjct: 373 YDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIEAFSFSEEQAEAIVTM 432

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L   +   ++ E + L  E   +  +L+  K     +  E++ V   F        
Sbjct: 433 RLYRLSSTDITLLQEESEQLQKEIAHLHCILDDPKVLRKVMIQELKAVNTAFPTP----- 487

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSAL-HFKEGDSL 551
            R T  E +  +    + AMI +E +   +S  G+ +  SL+S++    +L   KEGD L
Sbjct: 488 -RLTKIEETIEEIVIDKLAMINEEQVMFTLSRDGYAKRVSLRSYNASSDSLCGLKEGDRL 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYD 609
                  T D+IL  +  G    +P   L   +    G  +   I +   + I  AFV  
Sbjct: 547 IGCGEVSTLDKILFFTNMGTYGYVPVYELEEAKWKDVGTHLNAGIRMRGEEKITDAFVVK 606

Query: 610 S-TCKLLVVSSKGNAFI----VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           S   +  VVS      I    + E E+  N +       +  +E ++  +   GD + + 
Sbjct: 607 SFQSQAYVVSVTRMGLIKKSALSEYEVSRNNKTMSNMKLLDGDEVIRSFIAYDGDEIFIA 666

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF 703
            E    + + +D +P  S R KGV+     D  I D   +
Sbjct: 667 SETGFAVRYPLDMVPLTSPRSKGVKAMKLVDDVIGDACIY 706


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/700 (32%), Positives = 386/700 (55%), Gaps = 32/700 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 12  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 72  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+D V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 132 LSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPD PTG II +  + I ++Y  G+G   VR+R
Sbjct: 192 LAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGAII-QGADEIRKAYETGKGRIVVRSR 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   IVVTEIPY V K+ L++KI ++ I  ++P + ++RDES  E +RI + 
Sbjct: 251 TEIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D   ++  +   +D++  +  NM  +     P+ + +  IL  ++AHRR+++  
Sbjct: 311 LK-KDADSQAILNYLLKYTDLQINYNFNMVAID-NFTPRQVGIVPILTSYIAHRRDIIVA 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI
Sbjct: 369 RSKFDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENLKVSYDFTEEQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  E   + +++   +  +N +  E+REVK+ F     
Sbjct: 429 VTLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGDERTMFNLMKRELREVKKKFGNP-- 486

Query: 492 LGRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
              RR+     ++A   D A+L    I +E   V ++  G+++     S + S    L  
Sbjct: 487 ---RRSELQAQAQAIEIDTASL----IVEEDTYVSLTRSGYLKRTSPRSYNASTPEELGK 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDI 602
           ++ D   +   A TT  +L+ +  G     P   L   R    GE + Q L +   ++++
Sbjct: 540 RDDDKAVLIAPAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLTNFATDEEV 599

Query: 603 VTAFVYDSTC--KLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKV 656
           + A + D         V+  G    V+ +E        T+  K       E+++  +  +
Sbjct: 600 LYAEIIDDFTPETYFAVTKMGQIKRVDRTEFQPWRSYKTKSSKYAKLKGDEDQVVAMAPI 659

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
             D V V+ E    L F I+++P + S+  GV+  + KDG
Sbjct: 660 KLDAVMVITEKGYALHFPIEEVPVVGSKAAGVKAINLKDG 699


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 222/696 (31%), Positives = 400/696 (57%), Gaps = 26/696 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  ID+P IS+ +L++YI GPDFPTGG I++  + I ++Y  G+G   VR+
Sbjct: 183 NLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGG-IIQGIDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M L  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQITYNFNMVAISDGR-PKLMGLREIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+++ +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V  F  TE Q +A
Sbjct: 360 NRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S 
Sbjct: 420 IVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E   ++    ++ ++  E + + ++  G+I+   + S + S +     KE
Sbjct: 479 -----RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLKE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D  L+ +  G+   +P   +   R    G+ +  ++ L  N+ I+  
Sbjct: 534 GDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIIDV 593

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGDH 660
           F    +D      +++++          +   TR  K  +  K+ +E+++  V+++T + 
Sbjct: 594 FNEKTFDGKA-FYIIATRNGMIKKSNQSLFKTTRFNKPLIATKLKNEDEVVNVLRITQEQ 652

Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 653 MITVITHKGMSLTYSTEELSDTGLRAAGVKSINLKD 688


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 230/697 (32%), Positives = 402/697 (57%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L  ID P+I+I +L++YI GPDFPT G I++  E I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPT-GGIIQGIEGIKKAYETGKGKVVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+    +RI +
Sbjct: 242 RVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+ 
Sbjct: 302 ELK-KDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ +  TE Q +A
Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFK--- 476

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
            + R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     
Sbjct: 477 -VDRLSTIEAEISEIKIDK----EVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V
Sbjct: 532 KDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVV 591

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   D   +   + +  N  I + S      TR  K    +KV  ++++  VV++  D
Sbjct: 592 NVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESD 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 652 QLITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 688


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 232/713 (32%), Positives = 381/713 (53%), Gaps = 56/713 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E + ++SL   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MADERIVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  V+ + +L+ +  D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +ALI NP +S EKLL+ + GPDFPTGG+++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTG-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G+G      +V+TE+PYQ+ K+  IEK+AE +   ++  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +P+ ++  +   + ++  F   +  L  G+ P  + L  +L+++L
Sbjct: 300 DRDGMRVVVELRRDANPEQVLAQLHKRTALQNNFGAILLALVNGQ-PIQLSLRQMLQQFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            +R   + RR+ + ++  + R+E+++GL+ A  ++ ++I +I   R+    K  +     
Sbjct: 359 EYRELTMMRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMIQDARDAASAKASLQVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DA+L++ LR L  LE+  ++ EL+ L  E+ ++  LL+  K   + +  E++ +
Sbjct: 419 ISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSRLRHLLDDRKSLLDTLVSELKHL 478

Query: 483 KEIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRG--W----I 530
           ++ ++       RRT   E        R         M+ K+ +  V S++   W    I
Sbjct: 479 RKRYATP-----RRTALQEGGDELVAQRTAAQRPNTEMLRKQALANVSSDQQLLWQSDGI 533

Query: 531 RSLKSHSVDLSALHF-------KEGDSLKIALHAHTTDRILLLSTDGKAYTL-------- 575
             L +  V L  LH          G S K+ L      ++L  ++ G+   L        
Sbjct: 534 LRLVTPQV-LGRLHLLDDLDFGDHGCSAKLLLPVQPEPQLLAFTSGGRVAALRWEFAAQQ 592

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
             P    L     G+A Q++       D++     D    + ++SS G    +   ++  
Sbjct: 593 PGPLERFLPDSVDGQAEQVV-------DVLVVPPADQDFSVGLLSSDGRFKRLAGQDLRE 645

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR 683
            + +  T LK+    +++ VV    GD +AV     ++L   +D   IP M R
Sbjct: 646 LSGRATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDSTIPVMGR 698


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 204/499 (40%), Positives = 308/499 (61%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G+G      +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ +++ +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L AE++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQRLKLLLDNRDQLLDAMVTELKAL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ FS       RRT   E
Sbjct: 479 KKRFSTP-----RRTRLVE 492


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/739 (30%), Positives = 402/739 (54%), Gaps = 44/739 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+ E+ +A + +I
Sbjct: 123 EKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R  +EE+  G   
Sbjct: 183 DHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSRTEIEELKGGKQQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +     +  D   ++ 
Sbjct: 242 IIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTILN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +   +D++  +  NM  +     P+ + L  IL  +++HR++++  RS F     ++R+
Sbjct: 302 YLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNTDI 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFCEV 502
             +++E ++L      + +++      +N +  E+REVK+ F+  + ++L +  +   E+
Sbjct: 421 VTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLSEL-QAESQIIEI 479

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHT 559
             A       ++I +E   V ++  G+++     S + S+L     ++ D L     A T
Sbjct: 480 DTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDDELIFVKQAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAFVYDSTCKLLV 616
           T+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ A +  S  + L 
Sbjct: 533 TEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLY 592

Query: 617 VSSKGNAFI-----VEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKL 670
           V+   N FI      E S       K   ++K+  + +++  +  V  + + +V +N   
Sbjct: 593 VAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYA 652

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L FS  ++P         +Q  K  G+  +        L   DS   ++  + N     L
Sbjct: 653 LRFSSQEVP---------IQGLKSAGVKGI-------NLKNDDSLASAFAVTSNSFF-VL 695

Query: 731 GKRGGVGSLVPKGFPRSGK 749
            +RG +  +     P++ +
Sbjct: 696 TQRGSLKRMAVDDIPQTSR 714


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 233/709 (32%), Positives = 389/709 (54%), Gaps = 49/709 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++++  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y +LV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G+++D VDF   ++ E  EP V P++FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 KMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPH 186

Query: 195 NVQEICEAALAL----IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   +    I+  E  ++++++ I GPDFPTG +I+  R  I E+YR GRG  
Sbjct: 187 NLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALIL-GRRGIEEAYRSGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE----SA 306
           ++RA   +E +  G   I+V E+PY V +SR+IEK+AEL+  K+I  +  I D     S+
Sbjct: 246 KMRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSS 305

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             + I L    +  +P++++  ++  + ++  F + M  +  G  P+++ L  +L E+L 
Sbjct: 306 AKINIEL---RKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGE-PRILNLQEMLNEFLK 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSL 423
           H+  V+ RR+ + +   + R  IL+GLL A  +IDEI+ IIR  D   K K  +++RF+ 
Sbjct: 362 HQINVVTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIARFAF 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AI+++RLR+L  LE  +++SE + LL    +   +L+  ++  + I  E+ ++K
Sbjct: 422 SDAQAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYREILSDQRELLSVIREELTQLK 481

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           E F +     +RRT F      D A   + +I  + I +  +  G+I+ +   +      
Sbjct: 482 EKFGE-----KRRTQFA----FDDALDDEDLIPDDDIVISSTRLGYIKRMSPENFRQQNR 532

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
               +  +   + D+++    +     I+L +  G     K Y +P  +  S    G A+
Sbjct: 533 GGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPEASRTS---RGTAL 589

Query: 591 QLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             L+ L   + +   F     S+ + LV+++K            AN RK         E+
Sbjct: 590 VNLLKLQPEERVNACFSLRDLSSEQYLVLATKSGLVKKTPLSQYANVRKNGLIAMNIRED 649

Query: 649 KMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691
              +  K+   G+ + +V +    + F  + I    R     +G+RL S
Sbjct: 650 DQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRSTGRSAMGVRGIRLDS 698


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 294/481 (61%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVDGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  +++ F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 211/545 (38%), Positives = 332/545 (60%), Gaps = 27/545 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +   + LV+  V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 16  VEPVLEGDVLVD-RVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMF 74

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+  
Sbjct: 75  DGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPG 134

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SG
Sbjct: 135 NDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +     + NP  S    +E+LL  I GPDFPTG  I+   + 
Sbjct: 195 IAVGMATNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATIL-GHKG 253

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAEL+   +I  +
Sbjct: 254 IEDAYRTGRGSITMRAVVNVEEL-EGRTCLVVTELPYQANPDNLAIKIAELVKDGKISGI 312

Query: 299 EDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            D+RDE++     R+V+  K R     +++ +++  + ++  F  NM  +  G VP+ + 
Sbjct: 313 ADLRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQDNFAANMLAIVDG-VPRTLS 370

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           LD  ++ W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +  +  
Sbjct: 371 LDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAA 430

Query: 417 ---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQ 470
              ++    + E Q  AIL+++LR L  LE  +I+   +EL+ L+AE    +S+L S ++
Sbjct: 431 RDGLMQLLDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAE---YNSILASEER 487

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q   I+ E+    EI +K  D   RRT        D +   + +I +E + V I+  G++
Sbjct: 488 QREIISTEL---SEIVAKHGD--DRRTKILMGFDGDMS--MEDLIPEEEMVVTITRGGYV 540

Query: 531 RSLKS 535
           +  +S
Sbjct: 541 KRTRS 545


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 334/584 (57%), Gaps = 33/584 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+  RG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTSRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIK-RDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             +  D   RRT       AD     + +I +E + V I+  G+         RS K   
Sbjct: 487 VDRHGD--DRRTRIIA---ADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 542 KGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP 585


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 203/621 (32%), Positives = 361/621 (58%), Gaps = 23/621 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + ++++     +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIITLQNEENDLRELITTLSAIVSDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
                   E+ +A+  T++    ++I +E   V ++  G+++     S + S+L     +
Sbjct: 478 -----RLSEL-QAESQTIEIDIASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIV 603
           + D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +   +++I+
Sbjct: 532 DDDDLIFVKQAKTTEHLLLFTTLGNVIYRPIYELTDLRWKDIGEHLSQTISNFATDEEIL 591

Query: 604 TAFVYDSTCKLLVVSSKGNAF 624
            A +  S  + L ++   N F
Sbjct: 592 YADIVTSFDQGLYLAVTQNGF 612


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 192/464 (41%), Positives = 284/464 (61%), Gaps = 9/464 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V++ +    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 16  VKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLTPDKPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQ F  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  + + ++E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMATNMI 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+   A  L+ +P+ + + L+ YI GPD P GGII+  RE I E+Y  GRG F  
Sbjct: 195 THNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGGIIM-GREGIKEAYESGRGSFST 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+P+ V   +++E+I++ +  K++  +    D  +     R
Sbjct: 254 RATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDLTDRHNGTR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP  ++  +F  + +E  F +N NV  +G  P  M L  +L  W+ HRRE
Sbjct: 314 LVIEIKT-GFDPHAVLGQLFKYTPLEDSFTIN-NVALVGGRPHTMGLKELLDVWIQHRRE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +  + R+ ++ GLL+A ++IDE+I +IR   N D  K  +++ F L E Q
Sbjct: 372 VITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLMAVFDLDEIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              IL+LRLR L K+   +++SE D+L     ++D +L S +++
Sbjct: 432 AQYILDLRLRRLTKMSRIELESERDDLQRAIAELDEILASDQRR 475


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 215/619 (34%), Positives = 345/619 (55%), Gaps = 39/619 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM + G     +F K
Sbjct: 68  DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+G  HPHGD ++YD++VRL QP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAPRYTEC 187

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +++D VD +  Y+    EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 188 KMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 247

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L+ N E +    +E  L+ I GPDFP+G  IV +   I ++YR GRG  
Sbjct: 248 NLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGT-SGIEDAYRTGRGSI 306

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
             RA    EE+  G   +VVTE+PYQV    L  KIAE++   +I  + DI DE++    
Sbjct: 307 TQRAVVSTEEIN-GRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K  ++   +++ +++  + ++  F  NM  L+ G VP+ + +D  ++EW  H+
Sbjct: 366 QRLVITLKRDAV-AKVVLNNLYKHTQLQENFSANMLALANG-VPRTLSIDSFVREWTKHQ 423

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR++  + ++ I +G L A   +DE+IA+IR     D+ +  ++    + E
Sbjct: 424 IDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMDLLEIDE 483

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE  +I  E D L A  E+  ++L   ++Q + ++ E+ E+ + 
Sbjct: 484 IQANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDIVSEELAEIVDR 543

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           F        RRT     +        + +I +E + V I+  G++        R+ K   
Sbjct: 544 FGDD-----RRTEILPFA---GDMEMEDLIPEEDMVVTITRGGYVKRTREDQYRAQKRGG 595

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEAIQ 591
             +     +E D ++      TT R LL  T+       K Y LP          G+ + 
Sbjct: 596 KGVRGASLREDDVVE-HFFTTTTHRWLLFFTNQGRVYRAKGYELPEA---PRDAKGQHVA 651

Query: 592 LLIDLNHNQDIVTAFVYDS 610
            L+    +++I +    DS
Sbjct: 652 NLMAFQPDENIASVLAIDS 670


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 347/594 (58%), Gaps = 28/594 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  YA   I  RAIPD RDG KPV RRI++AM + G      ++KSA+ VG V+G  H
Sbjct: 17  KRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYRKSAKTVGYVMGTYH 76

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD ++Y+++VR+AQ +  R  LI G GNFG++D D  AA RYTE+R++ +A  +L+ +
Sbjct: 77  PHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYTESRLSALANELLRDI 136

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D V F   Y+    +P V PS+FPNLL NG +GIAVG AT IP+HN+ E+ +AA+A +
Sbjct: 137 EKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPTHNLGEVIDAAVAQM 196

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW- 266
            NP IS+++L++++ GPDFPTGG IV+    I +++  GRG F +R +  VEE   G   
Sbjct: 197 KNPNISLDELMQHVKGPDFPTGG-IVQGLSGIRKAFETGRGQFIIRGKTHVEEPKGGKIK 255

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA------EDVRIVLFPKNRSL 320
            IVV+EIPY+V KS+L+ +I EL++ ++I     +RDE+       + VRIV+  + +  
Sbjct: 256 KIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQKKVRIVVDIR-KEA 314

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   ++  ++  +D++  +  NMNV+  G + Q M L  +L  ++ H++EV+  R  + +
Sbjct: 315 DEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQ-MGLKALLGAYIDHQKEVVTNRCQYDL 373

Query: 381 QAIDRRVEILKGLLIAYLNIDEII-AIIRNEDK--PKPVMVSRFSLTENQVDAILNLRLR 437
                R  I++GL+ A   + +I+  I+ +ED+   K  ++ ++  T+NQ DAIL+++L 
Sbjct: 374 DRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYGFTDNQADAILSIQLA 433

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           SL +L+  +++ EL  L  E E++ S+L S K+    I  E+ E+K+ +++       R 
Sbjct: 434 SLTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNEIKKKYAEE------RL 487

Query: 498 TFCEVSRADKATLQQAM-IEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEGDSL 551
           T  +    ++  +  AM I  E   V ++N G+I     RS KS    L     KEGD +
Sbjct: 488 TEIQ-GEIEEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVGGTLETCGVKEGDRV 546

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +  +  +T+   L  + DGK +          +    G A+  +I L  NQ IV
Sbjct: 547 RYFMETNTSHTALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQRIV 600


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 227/685 (33%), Positives = 370/685 (54%), Gaps = 41/685 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE +  V L    +  YL+YA+S I  RA+PD RDG KPVHRRI++ M E+GL      
Sbjct: 31  AEEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPH 90

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VG+V+GK HPHGD SVY++LVRLAQ F    PL+ G GNFG++D D  AA RYT
Sbjct: 91  RKCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYT 150

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+ ++AE  +L  +  + V+F +T++   +EP V P++ PNLL NG+SGIAV +AT++
Sbjct: 151 ECRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNM 210

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E  +A  AL  NP+ S+++L+  +  PDFPTGG +V ++  + E Y  G+GG  
Sbjct: 211 APHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGG-VVTNKSGMKEIYETGKGGVT 269

Query: 252 VRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R R  +E V   RGS     +V++EIPYQ  K+RL+E+IA+ +  + I  + DIRDES 
Sbjct: 270 LRGRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESD 329

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            D   V+    R  D   ++E ++  + +E +F +N NV  +   P VMPL  IL E++ 
Sbjct: 330 RDGMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVN-NVALIDNKPTVMPLRQILDEFIK 388

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFS--L 423
            R + + RR+ F +     R  +++G  I   + D ++ IIR ++D P      R S  L
Sbjct: 389 FRVDTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHGL 448

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q D+IL + LR L  LE  ++ +EL  L  +      LL++  +  + +  E  E K
Sbjct: 449 SDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEAK 508

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-- 541
           E F++      RRT+  ++     + ++     K+ I + +S RG+++ +   +      
Sbjct: 509 EAFARP-----RRTSVEQIESL--SGVEDDSPPKDNI-LTLSERGYVKRICPKNFGAQNR 560

Query: 542 ------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQL 592
                     +  D L  A+H   +D+IL  S  G+   L A  +     +     A  L
Sbjct: 561 GTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSL 620

Query: 593 LIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L         VTA +  +  +        +++++S+G   +   + ++ +  KGK  + +
Sbjct: 621 LNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAASMLGH--KGKKVITL 678

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENR 668
              ++++ V+   T DH+ + G  +
Sbjct: 679 DKGDRLQQVMFARTSDHLFITGTGK 703


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 222/697 (31%), Positives = 382/697 (54%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYVAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKISYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS--T 490
            L+L  L   +   +++E   L        +++   +  +N +  E+REVK+ F+    T
Sbjct: 421 TLQLYRLSNTDIVALENEEAELRERITMFKAIIGDERTMYNVMKRELREVKKKFANPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L        E    D A+L    I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAE----AETIEIDVASL----IVEEDTFVSVTKGGYIKRTSPRSFNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ ++ 
Sbjct: 533 DDELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDESVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTG 658
           A + D          +  G     E  EI    T K K   + K+ +++ M + +  +  
Sbjct: 593 AEIVDEFGPQTYFAATKLGQIKRFERKEISPWRTYKSKAVKYAKLKNDDDMIVTISPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           D V VV  N   L F+ID++P + ++  GV+  + KD
Sbjct: 653 DDVMVVTHNGYALHFNIDEVPVVGAKAAGVKSINLKD 689


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 212/666 (31%), Positives = 370/666 (55%), Gaps = 32/666 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+  P+ S+E L++Y+ GPDFPTG I++ ++  I E+YR GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKYPDASLEDLMKYVKGPDFPTGAIVMGTK-GIKEAYRTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFANP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALH 544
                RRT   E S A     ++A++  E + V+IS  G+     +RS +S + D + L 
Sbjct: 481 -----RRTQISEES-AKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL- 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
             +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I
Sbjct: 534 -PDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQI 592

Query: 603 VTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           +  FV+D   + C  ++ ++ G    +E    +AN +  +T+     + +    +K+ G 
Sbjct: 593 IRVFVFDKLNTDCNFILATNDGYIKQLE----LANLQPTRTY-----KSRAMTAIKLKGK 643

Query: 660 HVAVVG 665
              VVG
Sbjct: 644 DSYVVG 649


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 217/624 (34%), Positives = 353/624 (56%), Gaps = 34/624 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + KSAR V
Sbjct: 23  IDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSARPV 82

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE R+T +
Sbjct: 83  SDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRLTPL 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP HN++E+
Sbjct: 143 AMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNLREL 202

Query: 200 CEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            +A   L++NP+     ++E  +E+I GPDFPT G+IV + + I ++Y  GRG  R+R  
Sbjct: 203 ADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGT-QGIKDAYTTGRGSIRMRGV 261

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVL 313
             +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DES++ V  RIV+
Sbjct: 262 TSIEEEG-SRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRIVV 320

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++AH+ EV+ 
Sbjct: 321 TLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVAHQIEVIV 378

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E Q DA
Sbjct: 379 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEVQADA 438

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL ++LR L  LE  +I  EL  + A    +  +L S  +Q   +  E++E+ + +    
Sbjct: 439 ILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRTIVRDELKEIVDKYGDD- 497

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
               RR+   ++  A     ++ +I +E + V I++ G+ +  K  +          +  
Sbjct: 498 ----RRS---QIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRG 550

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
              K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++    +
Sbjct: 551 AELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEE 610

Query: 601 DIVTAF---VYDSTCKLLVVSSKG 621
            I        Y+    L++ + +G
Sbjct: 611 RIAQVIQIQSYEDAPYLVLATVQG 634


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 360/620 (58%), Gaps = 21/620 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAF 624
           A +  S  + L ++   N F
Sbjct: 593 ADIVTSFDQGLYLAVTQNGF 612


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 229/697 (32%), Positives = 402/697 (57%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L  ID P+I+I +L++YI GPDFPT G I++  E I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPT-GGIIQGIEGIKKAYETGKGKVVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 RVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+ 
Sbjct: 302 ELK-KDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ +  TE Q +A
Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFK--- 476

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
            + R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     
Sbjct: 477 -VDRLSTIEAEISEIKIDK----EVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V
Sbjct: 532 KDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVV 591

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   D   +   + +  N  I + S      TR  K    +KV  ++++  VV++  D
Sbjct: 592 NVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESD 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 652 QLITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 688


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR++++  R
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS--T 490
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+    T
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFANPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L     T  E+  A       ++I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAEAQT-IEIDVA-------SLIVEEDTYVSVTKGGYIKRTSPRSYNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ ++ 
Sbjct: 533 DDELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDEYVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTG 658
           A + D          +  G     E  E     T K K   + K+  ++ + + +  +  
Sbjct: 593 AEIVDEFGPQTYFAATKYGQIKRFERKEFTPWRTYKSKAVKYAKLKKDDDIVVTIAPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           D V V+  N   L F+ID++P + ++  GV+  + KD
Sbjct: 653 DDVMVITHNGYALHFNIDEVPVVGAKAAGVKSINLKD 689


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 323/535 (60%), Gaps = 28/535 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 17  ENIIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLHPDRGHVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D   AA  RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLDAGPAAP-RYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 136 RLAAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVNGATGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI +PE++++ ++ ++ GPD PTGG IV   + I E+Y  GRG F+ RA
Sbjct: 196 NLVEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGGRIV-GLDGIREAYETGRGSFKTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           +  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D  +    +R+V
Sbjct: 255 KIDVEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGISDIVDLTDRNHGLRLV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P  +++ ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++AHR +V+
Sbjct: 315 IELKN-GFNPQAIIQQLYKLTPMEDSFGINNVTLVDGQ-PKTLGLLELLRVYVAHRIDVV 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR++FR+     R+ +++G+LIA L+IDE+I IIR  ++       +++ + L+E Q +
Sbjct: 373 RRRTAFRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDRLIAIYDLSEIQAN 432

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    +++ E D L  E E+++ +LNS       ++ E+ E+ E +   
Sbjct: 433 YILELRLRQLTKYSRIELEKEQDELRKEIEELERILNSEPVLRELVSSELAEIAEKYGTP 492

Query: 490 TDLGRRRTTFCE-------VSRA-------DKATLQQAMIEKEPITVVISNRGWI 530
                RRT   E       V++A        KAT     I  +P  V++S+ G I
Sbjct: 493 -----RRTVLLESEAVSPTVAKALAAATTPGKATPLALEIADDPCWVLLSSSGQI 542


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 311/528 (58%), Gaps = 21/528 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V L+  +E+ YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G     +F KSA
Sbjct: 12  IKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDNSFSKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG      AAA RYTE RM
Sbjct: 72  KVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLGAAAPRYTEVRM 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ + E  VDF   Y+    EP V  S+FPNLL NG+ GIAVGMAT IP HN+
Sbjct: 132 APLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAVGMATRIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+       ++NP+ + E+LL  +I    GPDFPTG +I+ +R  I + YR G G    
Sbjct: 192 REVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTR-GIEDMYRTGHGSITQ 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   V+E+  G  C+VVT++PYQV   RL++K+ E I   R+P + DIRDE++     R
Sbjct: 251 RAVVEVDEI-HGRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADIRDETSGRAGQR 309

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K  ++   +++ +++  + ++  FP NM  L  G VP+ + LDG ++ W+  + E
Sbjct: 310 IVVVLKKDAV-AKVVLNNLYKHTQLQNNFPANMLALVDG-VPRTLSLDGFVRHWVTFQME 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R+    +R+ IL G L A   +D +IA+IR+    D  +  ++    + E+Q
Sbjct: 368 VILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGLMDLLEIDEDQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E +   A       ++   ++Q   I  E+  + + + 
Sbjct: 428 ANAILEMQLRRLAALERQKIIDEYEEKAALVADYKDIIAKPERQRAIIGEELGAIVDKYG 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                  RRTT       D     + +I +E + V I+  G+I+  K+
Sbjct: 488 DD-----RRTTILPF---DGEMSVEDLIPEEDVVVTITRGGFIKRTKT 527


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 363/696 (52%), Gaps = 58/696 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+    +   +EE Y+ YA+S I  RA+PD+RDG KPVHRRI+  M + G      + K
Sbjct: 3   ENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGYSK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR VGEV+GK HPHGDQ++YD++VR+AQ F  RYPLI GQGNFG+IDGD  AA RYTE+
Sbjct: 63  SARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYTES 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ +L  +++D +D    +++ ++EP V P++ PNLL NG+ GIAVGMAT IP H
Sbjct: 123 RLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIPPH 182

Query: 195 NVQEICEA-------------ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           N+ E+  A              + L + P+I   + +EY+ GPDFPTG  I    + I++
Sbjct: 183 NLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATI-HGVDGILD 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            YR G G F++R+   V+E  RG   +VV  IPYQV+K+ +++ IAEL+    I  + DI
Sbjct: 242 MYRTGNGRFQIRSDVEVQEDSRGKR-LVVHSIPYQVKKAGMLQGIAELVRKDIIKGIRDI 300

Query: 302 RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDES+ E +R+V+  K  + DP  ++  ++  S ++  +  NM  +  G  P  + L  I
Sbjct: 301 RDESSKEGIRVVIEIKQNA-DPHAVLNQLYQSSRLQESYSANMMGILNGE-PVQLDLRTI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
           L  ++ HR  V+ RR+ F     + R  IL GLL A   + EII + R+ D         
Sbjct: 359 LHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQYL 418

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K   + RF  ++ Q  AI   RL  L KL   ++  EL  L    +   ++L S  
Sbjct: 419 RGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILGSRI 478

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++ N I   I E+ E+  +  D  R R     +S       ++ ++ ++ I + ++   +
Sbjct: 479 RRLNII---ISELDEVVDRHGDERRSRIDPMPLSMD-----REDLVAEQAIVISLTRDNY 530

Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           IR L   S          L  +  KE D+    +   + DR+L+ +  G+ Y L A    
Sbjct: 531 IRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETP 590

Query: 582 SGR--GHGEAIQ-LLIDLNHNQDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEI 631
           S    G G  I+ LL  +  ++ +++      +         L+  ++ G       SE 
Sbjct: 591 SASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEY 650

Query: 632 IANTRKGKTFLKVSSEEKMKLVV---KVTGDHVAVV 664
           +   R GK  L+ +  E+  LV        DHV +V
Sbjct: 651 VKINRNGKYALRFAGGEEDALVSVRPATDADHVVLV 686


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 341/596 (57%), Gaps = 45/596 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EEN+        ++  Y  Y++S I  RA+PD+RDG KPV RRI++AM+E+GL     
Sbjct: 2   VTEENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQ 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +KSARIVG+ +GK HPHGD S+YD+LV +A+ +    PL+ G GNFG+IDGDSAAA RY
Sbjct: 62  HRKSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L G+D + VDF   ++E + EPV+ P+K P LL NGT+GIAVGMAT+I
Sbjct: 122 TEARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  EI + A+AL+DNPE++ EKL++YI GPDFPTGGII  + E I   Y  G G  R
Sbjct: 182 PPHNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGIIANADE-IANIYENGEGRLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR ++ +E+   G   IV+TEIP+     KSRL+E +  L+  K    + D+RDES+ DV
Sbjct: 241 VRGKYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSSDV 300

Query: 310 RIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           RIV+   K R+++   L+  IF  + +E  + +NM +    + P++  L GIL+E+L   
Sbjct: 301 RIVVEVKKGRNVEN--LLNGIFKKTPLEDTYSVNM-LAVRDKQPKIFSLKGILEEFLGFE 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS------ 419
            E+  +  +  ++    R E+++GL+ A   ID II ++R  +   + K  +V+      
Sbjct: 358 EELYTKEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLVNGNIAEI 417

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        F  TE Q DAIL + L  L  LE  ++ +E +NL    E+ + +L+ 
Sbjct: 418 KFKSEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKILSD 477

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    I  +++   + F K      RRT        ++  +    +++E + V+I   
Sbjct: 478 KTELHRVIKTDLKANVKNFEKP-----RRTELLN----EEKQVYVEEVKEEDVYVLIDRF 528

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLK---IALHAHTTDRILLLSTDGKAYTLPAGNL 580
           G+ +     SVD+S++     ++L      +    TDRI + +  G  + + A ++
Sbjct: 529 GYAK-----SVDVSSISKANEEALNEYPTKIMMKNTDRICIFTASGNMHQVKAKDI 579


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  356 bits (914), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 185/433 (42%), Positives = 288/433 (66%), Gaps = 10/433 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + +++L   ++  Y+ Y++S I  RA+PD +DG KPV RR+++ M E G      ++K
Sbjct: 2   EKIISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQGA--FKNYRK 59

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG+ID D  AA RYTE 
Sbjct: 60  SARIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEI 119

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +V+E +L  + +D VD +  ++    EP+V P+  PNLL NG+SGIAVG+AT++P H
Sbjct: 120 KLQKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A  + I+N +ISIE+L++ II PDFPTGGII    E + +++  GRG   +R+
Sbjct: 180 NIVESINAICSYIENTDISIEELMKDIIAPDFPTGGIIY-GYEGVKKAFLTGRGKILLRS 238

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E++G G +C+++ EIPYQ++K  LI+K  +LI  +++  +  IRDES    +RIV 
Sbjct: 239 KVFFEKIG-GCYCLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVF 297

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           + K ++++  LL+++IF  + +ET F +N   L  G+ P  + L  I+K ++ HR EVL 
Sbjct: 298 YLK-KNVNKHLLLKNIFKYTPLETTFSVNNIALVNGK-PVQLNLKDIIKHFVNHRHEVLI 355

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RRS F ++    +  I+KG  +   NI+ +I +I++   ++  K  ++ +F+L+E QV A
Sbjct: 356 RRSKFDLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIKFNLSEKQVKA 415

Query: 431 ILNLRLRSLRKLE 443
           ILNL+L SL KLE
Sbjct: 416 ILNLKLNSLTKLE 428


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 293/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDHPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG F  
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 331/571 (57%), Gaps = 14/571 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D + ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  R
Sbjct: 302 LKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHF-TPHQVGIQKILSSYIAHRKSIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   ++ TE Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENLKVSYAFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E D L    + + +++      +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGDEATMYNVMKRELRDVKKKFG----- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             RR+   + ++  +      ++E+E   V ++  G+I+     S + S+L     ++ D
Sbjct: 476 NERRSELQKEAQTIEIDTASLIVEEETF-VSVTKSGYIKRTSPRSFNASSLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            L    +A TT  +LL +  G     P   L
Sbjct: 535 HLIFVENAKTTQHLLLFTDQGNVIYRPIHEL 565


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 310/499 (62%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+ +++ E +L  + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+ NP++S  ++L+ I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLG-SGVRETYLRGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G+G      ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L  GR PQ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVDGR-PQQLTLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            +R   + RR++  ++  + R+E+++GL  A  ++ ++IA+I   R+  K +  ++  F 
Sbjct: 359 DYRELTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLMVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E D+L  E++++  LL +  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQRLTLLLENRDQLLDALIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ F+       RRT   E
Sbjct: 479 KKRFATP-----RRTRLVE 492


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 340/584 (58%), Gaps = 34/584 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K A
Sbjct: 18  IETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGEV+G  HPHGD ++YD+LVRLAQP+V RYPLI GQGNFG+   D AAA RYTE RM
Sbjct: 78  RVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFGSPGNDPAAAMRYTECRM 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +A  +++ + ED VDF   Y+    EP + PS+FPNLL NG++GIAVGMAT+IP HN+
Sbjct: 138 APLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNGSAGIAVGMATNIPPHNL 197

Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   A   +++P+ + E+    L+E + GPDFP G +IV  RE I ++YR GRG    
Sbjct: 198 REVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIV-GREGIEQAYRTGRGSITQ 256

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   V+E  +G   +V+TE+PY V    L +KIA+L    ++  + D++D ++     +
Sbjct: 257 RAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQGIADVKDNTSSRTGQQ 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ ++   ++++T F  NM  L  G VP+ + +D  +  W+ H+ +
Sbjct: 317 LVVVLK-RDAVARVVLNNLLKHTELQTNFSANMLALVDG-VPRTLSIDQFISNWVEHQID 374

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR++FR++  +    I +GL+ A   +D +IA+IR+    D  +  ++    + E Q
Sbjct: 375 VIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDARQGLIRLLEIDEIQ 434

Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            +AIL+++LR L  LE  +I    +EL+ ++A+ E I  L N  +Q+  QI  +  E+ E
Sbjct: 435 ANAILDMQLRRLAALERQKIIDRLAELELIIADLEDI--LANVARQR--QIVGD--ELDE 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSH 536
           I +K  D   RRT   ++  AD     + +I  E + V I+  G+         R+ K  
Sbjct: 489 IVAKYGD--DRRT---QIIAADGDLSMEDLIPDEELVVSITRGGYAKRTLANEYRTQKRG 543

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
              +     +  D ++  +       +L  +T G+ Y + A NL
Sbjct: 544 GKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRIKAYNL 587


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 348/605 (57%), Gaps = 19/605 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           ++P+ +++ L++ I GPDFPTGGII +  + I ++Y  G+G   +R +  VE V  G   
Sbjct: 198 ESPDCTVDDLMQVIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++T +  NM V    R P +M L  IL  +++H++EV+  RS F +Q    R 
Sbjct: 317 FLYKNTDLQTTYNFNM-VAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IR   ++   K  ++S+FS TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     RR+   E   
Sbjct: 436 TALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D L      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRLIHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+ +  +  ++ ++ IV A     ++    LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKAISVKEFNPASYLLF 609

Query: 617 VSSKG 621
           ++  G
Sbjct: 610 MTKNG 614


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 230/649 (35%), Positives = 368/649 (56%), Gaps = 44/649 (6%)

Query: 3   VDNISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           V    N +T++E     + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+
Sbjct: 10  VPEAGNPDTVLEGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRV 69

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGN
Sbjct: 70  LYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGN 129

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL 
Sbjct: 130 FGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLV 189

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIV 233
           NG+SGIAVGMAT+IP HN++E+ +     + NP  S    +E+LL  + GPDFPTG  I+
Sbjct: 190 NGSSGIAVGMATNIPPHNLREVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATIL 249

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
              + I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   
Sbjct: 250 -GHKGIEDAYRTGRGSVTMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDG 307

Query: 294 RIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           +I  + D+RDE++     R+V+  K R     +++ +++  +++++ F  NM  +  G V
Sbjct: 308 KIQGIADLRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-V 365

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +
Sbjct: 366 PRTLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASN 425

Query: 412 KPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLL 465
             +     ++    + E Q  AIL+++LR L  LE  +I+   +EL+ L+AE  +I   L
Sbjct: 426 TTEAARDGLMELLDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNEI---L 482

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S ++Q   I+ E+    EI  K  D   RRT        D +   + +I +E + V I+
Sbjct: 483 GSEQRQREIISTEL---GEIVDKHGD--DRRTRILMGFDGDMS--MEDLIPEEEMVVTIT 535

Query: 526 NRGWIRSLKSHSVDLSALHFK-------EGDSLKIALHAHTTDRILLLSTD-GKAYTLPA 577
             G+++  +S +        K        GD +       TT   LL  T+ G+ Y   A
Sbjct: 536 RGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKA 595

Query: 578 GNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
             L+ +GR   G+ +  L+    ++ I        Y     L++ + +G
Sbjct: 596 YELMEAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQAPYLVLATKRG 644


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 230/697 (32%), Positives = 401/697 (57%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L  ID P+I+I +L++YI GPDFPT G I++  E I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPT-GGIIQGIEGIKKAYETGKGRVVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 RVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+ 
Sbjct: 302 ELK-KDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ +  TE Q +A
Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFK--- 476

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
            + R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     
Sbjct: 477 -VDRLSTIEAEISEIKIDK----EVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V
Sbjct: 532 KDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVV 591

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   D   +   + +  N  I + S      TR  K    +KV   +K+  VV++  D
Sbjct: 592 NVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETD 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 652 QLITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 688


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  356 bits (914), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 360/620 (58%), Gaps = 21/620 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAF 624
           A +  S  + L ++   N F
Sbjct: 593 ADIVTSFDQGLYLAVTQNGF 612


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  356 bits (914), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 204/620 (32%), Positives = 364/620 (58%), Gaps = 20/620 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G     +F+
Sbjct: 4   KHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKSFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++V+  +L+ +D++ V+F   +++ + EP V PS FPNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P+ S+EKL+ +I GPDFPTGGI+ +  + I ++Y  G+G   +R
Sbjct: 184 HNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGIL-QGADEIKKAYETGKGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE+  G   IV++EIPY+V K+ L++++ E+ I K+I  + ++RDES      ++
Sbjct: 243 SKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + ++  +F  +D++  +  NM  +   R P+ + L  +L  ++AHR+ V+ 
Sbjct: 303 VELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMR-PKQVGLKQMLSSYVAHRQSVIL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           RRS + ++    R  I+ GL+ A   +DE+I  IR ++DK   K  ++   + T+ Q +A
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKNNLILAHAFTQEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +  Q++ E + LLA   ++  ++    + +  +  E+REVK+ +    
Sbjct: 422 IVTLQLYRLTNTDITQLQQEAEELLATIAELQKIIQDSTELFKVMKKELREVKKQYQSE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKE 547
                R T  E    +     + ++ +E + VV++  G+++  SL+S+S  +      KE
Sbjct: 481 -----RLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYVKRSSLRSYSASNNEEAGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +T D +LL++  G     P   L  L  +  GE + Q L  L   ++I+T
Sbjct: 536 SDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPDLRWKDVGEHLSQALTTLKIEENILT 595

Query: 605 AFVY---DSTCKLLVVSSKG 621
              Y    +T +LL+++  G
Sbjct: 596 VLPYKQLSTTQELLILTQAG 615


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  356 bits (914), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 348/605 (57%), Gaps = 19/605 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           ++P+ +++ L++ I GPDFPTGGII +  + I ++Y  G+G   +R +  VE V  G   
Sbjct: 198 ESPDCTVDDLMQVIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++T +  NM V    R P +M L  IL  +++H++EV+  RS F +Q    R 
Sbjct: 317 FLYKNTDLQTTYNFNM-VAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA+IR   ++   K  ++S+FS TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     RR+   E   
Sbjct: 436 TALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D L      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRLIHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+ +  +  ++ ++ IV A     ++    LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKAIPVKEFNPASYLLF 609

Query: 617 VSSKG 621
           ++  G
Sbjct: 610 MTKNG 614


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 254/782 (32%), Positives = 401/782 (51%), Gaps = 56/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N  TL+ E  K  S      E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 17  VHNDRTLLVELHKEAS------ESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 70

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ-----------RYPLISG 114
           L      +K AR+VGEV+GK HPHGD +VYD+LVRLAQ               R PLISG
Sbjct: 71  LASKKPHRKCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISG 130

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            GNFG++DGD AAA RYTE R+  ++E ++L  +D D VDF   ++    EPVV P++ P
Sbjct: 131 HGNFGSLDGDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLP 190

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           N+L NG SGIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+
Sbjct: 191 NVLINGASGIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL 250

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEV-GRGS-WCIVVTEIPYQVQKSRLIEKIAELII 291
                I +++R GRG   VR +   EE+ G+ S   IV+TEIPY   KS L+ KIAEL+ 
Sbjct: 251 -GISGIADAFRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVN 309

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           +K +  + DIRDES      ++    R     +++ +++  + +++RF  N+ V  + + 
Sbjct: 310 SKMLEGVSDIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNL-VGILNKE 368

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+V  +  +L+ +L  R  V+ RR+   +   + R  +L+G L     +D+++ ++++  
Sbjct: 369 PEVFSIKRLLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAK 428

Query: 412 KPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                M +    F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL S 
Sbjct: 429 DSASAMQALQKDFGLSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASDLRELL-SN 487

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           KQ+  ++       KE  +   + G  R T  E    D       +I      + +S +G
Sbjct: 488 KQRVLKVV-----EKEALALKNEFGSPRRTVLE-EYGDGRIDNIDVIPNNESFLTLSEKG 541

Query: 529 WIRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+ ++          +   S    K  D +  +      D +L+ S  G  Y+  A  +
Sbjct: 542 YIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQV 601

Query: 581 --LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
              S    G  I  ++ +   + I + F    +     L++++SKG     E     +  
Sbjct: 602 PECSRTSTGVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIR 661

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
            +G   +++   +++K V   T      +G    + + +  +   M RG +G+R    K+
Sbjct: 662 PQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMRRGARGLRAMRIKE 721

Query: 695 GGISDVICFKICEGLTWIDSAGR-----SYNRSENDLLGWL--GKRGGVGSLVP-KGFPR 746
           G   ++    I  G  W +S          NRS+     WL      G+   VP   FPR
Sbjct: 722 G--DEIAAIDIVPGSVWKESPTLLCTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPR 779

Query: 747 SG 748
            G
Sbjct: 780 HG 781


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 220/698 (31%), Positives = 385/698 (55%), Gaps = 28/698 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIVPMLTSYIAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+  + T
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L        E    D A+L    I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAE----AETIEIDVASL----IVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ I+ 
Sbjct: 533 DDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYILY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKV-SSEEKMKLVVKVTG 658
           A + D   +      +  G     E  E     T K K+  + K+ ++++ +  +  +  
Sbjct: 593 AEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           D V +V  N   L F+I+++P + ++  GV+  + KD 
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDN 690


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 245/765 (32%), Positives = 399/765 (52%), Gaps = 39/765 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      F K
Sbjct: 8   DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGFVK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D  AA RYTE 
Sbjct: 68  SSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAAMRYTEC 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 128 KLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA   +++NP+ S    +E  +E + GPDFPT  +IV   + I ++Y  GRG  
Sbjct: 188 NLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIV-GDQGIKDAYTTGRGSI 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  +G   IV+TE+PY V    L+  IA+ I   ++P    I DES++ V 
Sbjct: 247 KMRGVTSIEEE-KGRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDESSDRVG 305

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ ++F  S +E+ F +NM  +  G VP+ + LD +L  +  H+
Sbjct: 306 MRIVVTLK-RDAVPRVVLNNLFKHSALESNFGVNMLSIVDG-VPRTLRLDQMLTLYTDHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR     +  +  ++    + E
Sbjct: 364 VDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLMELLDVDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  E+R   EI
Sbjct: 424 EQAQHILDMQLRKLAALERQKIIDELAELENTIADLKDILAKPERQRKIVEDELR---EI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D   RRT       A      + +I +E + V I++ G+         RS K   
Sbjct: 481 VDKHGD--ERRTQLVA---ATGDVTDEDLIAQENVVVTITSGGYAKRTKVDAYRSQKRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K  D ++      T D IL  +  G+ Y L A  +   S    G+ +  L++
Sbjct: 536 KGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARGQHVANLLE 595

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
               + I        Y+    L++ + KG       ++  ++   G   + ++  + +  
Sbjct: 596 FQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINLNEGDSLIG 655

Query: 653 VVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            V  +G D + +V +  + + FS   D +  M R   GV+   +KD      +C      
Sbjct: 656 AVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLSMCVTSDGD 715

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + G    R+  +     G RGG+G    K  P+ GK + +
Sbjct: 716 YLLVATEGGYGKRTAMEEYPAKG-RGGLGVTTLKYQPKRGKLIGA 759


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 197/470 (41%), Positives = 303/470 (64%), Gaps = 24/470 (5%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           + +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA 
Sbjct: 1   SPYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAM 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT+V+E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT
Sbjct: 61  RYTEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMAT 120

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+ +A L ++DN   + E L+++I GPDFPTGG I   R  I+++Y+ GRG 
Sbjct: 121 KIPPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIF-GRRGIIDAYKTGRGR 179

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            ++RA+  +E  G+    IV+ E+PYQV KSRLIE+IA L   K++  + ++RDES  E 
Sbjct: 180 VKIRAKHHIETKGK-KEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREG 238

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ +++  + +ET F + +  +   + P+V  L  +L  +L+HR
Sbjct: 239 IRVVIELKKDAM-SEIVLNNLYKSTPLETTFGIILLAVH-NKEPKVFNLPELLNLFLSHR 296

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  +  RF L+ 
Sbjct: 297 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDRFGLSI 356

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   LLA   +++S+L S  +    I  E+ E+KE 
Sbjct: 357 IQSQAILDMRLGRLTGLQRDKLEAEYQELLALIAELESILKSEDKLNEIIKEEVAEIKEK 416

Query: 486 FSKSTDLGRRRT----TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           +S       RRT    ++ E+   D       +I  EP+ V I++ G+++
Sbjct: 417 YSDE-----RRTEIEDSYDEIDIED-------LIPNEPMVVTITHNGYVK 454


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 213/611 (34%), Positives = 359/611 (58%), Gaps = 27/611 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      ++K+A+ VG VIG  H
Sbjct: 18  DRFSRYSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPYRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++ ++  +++ +
Sbjct: 78  PHGDSSVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYTEARLSAISAELMRDL 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+  VD+   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ EI +    L+
Sbjct: 138 DKGTVDYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLPEIIDGITLLM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++LLE I GPDFPTGG IV+    I ++Y  G+G   VR R  +EE   G   
Sbjct: 198 QKPHTSLDELLEIIKGPDFPTGG-IVQGSNGIRQAYETGKGKIVVRGRTAIEETRGGRKQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++    +RIV+  K  + DP+ ++
Sbjct: 257 IVITEIPYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIVVELKKEA-DPEAIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  +  NM V    + P++M L  +++ ++ H+++V  RRS F ++    R
Sbjct: 316 HYLFKNTDLQVTYHFNM-VAIHNKTPKLMGLLDLMQAYIDHQKQVFTRRSQFELKKAVDR 374

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             I++GL+ A   +DE+IA+IR ++DK   K  + S+F  TE Q +AI+ L+L  L   +
Sbjct: 375 AHIVEGLMKAVSILDEVIAVIRASKDKKDAKANLQSQFGFTEPQAEAIVTLQLYRLTNTD 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ E + L  +  ++ ++L S K+  + I  E+ ++K+ F+       RRT      
Sbjct: 435 ITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKTFASP-----RRTEI---- 485

Query: 504 RADKATLQQAM---IEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIALHA 557
           RA+   ++  M   I  E + V I+  G+++  SL+S+S         KEGD L ++  A
Sbjct: 486 RAEIEEIKINMDMLIASEDVRVTITKAGYVKRTSLRSYSASSQDGPGMKEGDRLLLSQEA 545

Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +TTD +LL +  G    +P  +L  +  +  G+ +  L+ ++ + +I+ A +   +  T 
Sbjct: 546 NTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAIDADDEIIAAQIIREFAETK 605

Query: 613 KLLVVSSKGNA 623
            LL ++  G A
Sbjct: 606 YLLFMTRAGMA 616


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 210/695 (30%), Positives = 383/695 (55%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAID-NFTPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 478 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D   T   L  +  G     E  E     T K K+      ++    +V VT    D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDNSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKAINLKD 689


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 245/765 (32%), Positives = 399/765 (52%), Gaps = 39/765 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      F K
Sbjct: 8   DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGFVK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D  AA RYTE 
Sbjct: 68  SSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAAMRYTEC 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 128 KLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA   +++NP+ S    +E  +E + GPDFPT  +IV   + I ++Y  GRG  
Sbjct: 188 NLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIV-GDQGIKDAYTTGRGSV 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  +G   IV+TE+PY V    L+  IA+ I   ++P    I DES++ V 
Sbjct: 247 KMRGVTSIEEE-KGRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDESSDRVG 305

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ ++F  S +E+ F +NM  +  G VP+ + LD +L  +  H+
Sbjct: 306 MRIVVTLK-RDAVPRVVLNNLFKHSALESNFGVNMLSIVDG-VPRTLRLDQMLTLYTDHQ 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR     +  +  ++    + E
Sbjct: 364 VDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLMELLDVDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  E+R   EI
Sbjct: 424 EQAQHILDMQLRKLAALERQKIIDELAELEETIADLKDILAKPERQRKIVEDELR---EI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D   RRT       A      + +I +E + V I++ G+         RS K   
Sbjct: 481 VDKHGD--ERRTQLVA---ATGDVTDEDLIAQENVVVTITSGGYAKRTKVDAYRSQKRGG 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K  D ++      T D IL  +  G+ Y L A  +   S    G+ +  L++
Sbjct: 536 KGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARGQHVANLLE 595

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
               + I        Y+    L++ + KG       ++  ++   G   + ++  + +  
Sbjct: 596 FQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINLNEGDSLIG 655

Query: 653 VVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            V  +G D + +V +  + + FS   D +  M R   GV+   +KD      +C      
Sbjct: 656 AVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLSMCVTSDGD 715

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + G    R+  +     G RGG+G    K  P+ GK + +
Sbjct: 716 YLLVATEGGYGKRTAMEEYPAKG-RGGLGVTTLKYQPKRGKLIGA 759


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  356 bits (913), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 241/729 (33%), Positives = 392/729 (53%), Gaps = 68/729 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + G  +   + KSA IV
Sbjct: 11  VNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYSKSATIV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE+RM ++
Sbjct: 71  GDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRYTESRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF   Y+    EP V P+  PNLL NG+SGIAVGMAT+IP H++ E 
Sbjct: 131 AHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNIPPHHLGET 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+D+PE ++  L+ Y+ GPDFPTG +I    + I E+Y  G+G   +RA+  +E
Sbjct: 191 LDAVLFLMDHPEATVSDLMHYLPGPDFPTGALI-NGTKGIYEAYETGKGRIYIRAKTHIE 249

Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
            +   G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RDES +D +R+V+  + 
Sbjct: 250 TDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIRMVIEVR- 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++  +F  + ++T F +NM  L  G+ P+++ L  +L  ++AHRREV+ RR+ 
Sbjct: 309 RGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQ-PKLLGLKSLLNVFIAHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  IL+GL +A  NID+II++I++  +P   K +++S+              
Sbjct: 368 YELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAVMLAHA 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL+LRL  L  LE+ +I  E  +++ + E 
Sbjct: 428 GAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSIIRDIEG 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
             ++L+  ++    I  E+  +K  F+       +R T    +  D +   + +I +E  
Sbjct: 488 FLAILHIPERLVAVIKEELLAIKAQFND------QRCTHILDTHLDLS--MEDLIAEEDR 539

Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + +S+ G+I++      +         S    K+ D ++    A+T D +L  S  GK 
Sbjct: 540 VITLSHEGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKV 599

Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           Y L    L   S    G+ I  L+    ++    I+T   Y     L   +  G      
Sbjct: 600 YWLKVYELPHASRNAKGKPIVNLLPFEADERLNAILTTREYPEDLYLFFATQNGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-- 684
            SE       G   + +  ++++  V    G+ ++ +     K + FS + +  M R   
Sbjct: 660 LSEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSMGRAAG 719

Query: 685 --KGVRLQS 691
             +G+RL++
Sbjct: 720 GVRGMRLEA 728


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 229/697 (32%), Positives = 402/697 (57%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L  ID P+I+I +L++YI GPDFPT G I++  E I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPT-GGIIQGIEGIKKAYETGKGKVVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 RVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+ 
Sbjct: 302 ELK-KDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ +  TE Q +A
Sbjct: 360 NRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFK--- 476

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
            + R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     
Sbjct: 477 -VDRLSTIEAEISEIKIDK----EVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V
Sbjct: 532 KDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVV 591

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   D   +   + +  N  I + S      TR  K    +KV  ++++  VV++  D
Sbjct: 592 NVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESD 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 652 QLITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 688


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++ A 
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +EE   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 342/582 (58%), Gaps = 30/582 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +VEE +++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+ L    A
Sbjct: 1   MVEERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRLAQ F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  +    V+F   ++    EP+V P++ P LL NG SGIAVGMATS
Sbjct: 121 TEIRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ EI  A +A+I  P +S + LL+ I GPDFPTGG ++ ++  I E+Y  GRG  
Sbjct: 181 VPPHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINK-GIQETYLEGRGSI 239

Query: 251 RVRARWCVEEV----GRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV    GR   + +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 TMRGVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQVMPLDGIL 361
             D  R+V+      L  D   E +  + +  T F  N + + +  V   P  + L  +L
Sbjct: 300 DRDGTRLVV-----ELRKDTEPEKVLSILERRTSFKTNFSSIILALVDGQPVQLNLRQLL 354

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + +L++R   + RR+ + ++  + R+E+++GLL A  ++  I+ II+        K  + 
Sbjct: 355 EHFLSYREITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQALTESSNAKLNLR 414

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F L++ Q DAILN+ LR L   E+  +  E ++L  +++K+++LL   +   + I  E
Sbjct: 415 VHFDLSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKKLNNLLKKREALLSTIMNE 474

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSH 536
           ++ +K+ F+       R  +F  ++ +   + Q+ ++E  P T  ++IS+ G ++ +   
Sbjct: 475 LKNLKKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPKTNQLIISHDGQVQIIAPQ 534

Query: 537 SVD-------LSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            ++       L++ H      L + +  H +  IL+ S+ G+
Sbjct: 535 LINHLHLEATLTSGHHPSPPQLLLPISQHPS--ILIFSSSGR 574


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 214/591 (36%), Positives = 341/591 (57%), Gaps = 39/591 (6%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG+
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I 
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIH 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  
Sbjct: 180 RAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITA 239

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDES+ E VR V+  + R+   ++++ ++F L+ ++T F  NM  +  G VP+++ L  
Sbjct: 240 VRDESSREGVRFVIEVR-RAASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQ 297

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           I+  ++ H++EV+ RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  
Sbjct: 298 IIDNYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAE 357

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I 
Sbjct: 358 LMSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIK 417

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
            E+ EVK    K  D  R      EV     +   + +IE+E + + +SN+G+I+ L   
Sbjct: 418 EEMDEVKR---KYADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQD 470

Query: 534 -----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-------------- 574
                K     +        D ++  +   T D +L  +  G+ Y               
Sbjct: 471 EFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAK 530

Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            LP  NLL     GE IQ +I+    +D+   + + +T + +V  +  + F
Sbjct: 531 GLPIVNLLK-LDEGETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 579


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 210/695 (30%), Positives = 382/695 (54%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D + V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAID-NFTPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 478 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D   T   L  +  G     E  E     T K K+      ++    +V VT    D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKTINLKD 689


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/432 (43%), Positives = 284/432 (65%), Gaps = 10/432 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++A+  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y SLV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G++++ VDF   ++ E  EPVV PS+FPNLL NG +GIAVGM+T+IP H
Sbjct: 127 KMSRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMSTNIPPH 186

Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +    +IDN     +  IE+LL  I GPDFPTG  I+  R  I E+YR GRG  
Sbjct: 187 NLREVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATILGKR-GIEEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+V E+PY V +SR+IEKIAEL+  KRI  +  I D + ++ +
Sbjct: 246 KMRAICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAGKNSK 305

Query: 311 I-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     + ++P +++  ++  + ++  F + M  +  G  P+++ L  IL+E+LAH+ 
Sbjct: 306 AKIAIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIVRGE-PKILNLLEILEEFLAHQI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +Q  + R  IL+GLL A  +IDEI+AIIR   N ++ K  +++RF+ TE 
Sbjct: 365 QVVTRRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITRFAFTEV 424

Query: 427 QVDAILNLRLRS 438
           Q  AI+++RLR+
Sbjct: 425 QAQAIVDMRLRA 436


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/493 (38%), Positives = 300/493 (60%), Gaps = 14/493 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL     + 
Sbjct: 14  DEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS+R++GEV+GKLHPHGDQ++YD+LVRLAQ F  R PL+ G GNFG++D D  AA RYTE
Sbjct: 74  KSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD-DGPAAPRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+   +  +  G+DED VDF   Y+ + ++P V PS  PNLL NG SGIAVGMAT++  
Sbjct: 133 ARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP  ++E ++ ++ GPD PTGG IV   + I ++YR GRG FR R
Sbjct: 193 HNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIV-GLDGIRDAYRSGRGTFRTR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A   +E +      I +TE+PY V   +++EKIA+ + AK+I  + +++D  +    +R+
Sbjct: 252 ATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRL 311

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K    DP+ ++E ++  + +E  F +N NV  +G  P+ + L  +L+ W+ HR EV
Sbjct: 312 VVEVKT-GFDPEAVLEQLYRTTPLEDSFGIN-NVALVGGQPRTLGLLELLRVWVEHRIEV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+++R+     R+ +++GLL+A ++IDE+I +IR+ D     +  ++  F L+E Q 
Sbjct: 370 VRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLMDVFDLSEPQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+L+LR L K    +++ E   L  E   ++ +L S       ++ E+ +V   +  
Sbjct: 430 TYILDLQLRRLTKFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVSTEMGDVAATYGT 489

Query: 489 STDLGRRRTTFCE 501
                 RRT   +
Sbjct: 490 P-----RRTVLLD 497


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 236/758 (31%), Positives = 409/758 (53%), Gaps = 56/758 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KSA
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN+
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR++ 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++   
Sbjct: 243 KIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  +REV+ +R+
Sbjct: 303 KRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQREVIKKRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+ 
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIVA 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +       
Sbjct: 422 LQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP---- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGDSL 551
            RRT   +     K +    +I  E + V++S+ G+I+  S++S+    +    K+ D  
Sbjct: 478 -RRTEIQDKVATIKIS-TDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDYP 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYD 609
                 +  D + + ++ G     P   +   R    GE I   I L+++++I+  F + 
Sbjct: 536 IFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFS 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSS-EEKMKLVVK--VTGDHV 661
           S      +  KG   I  +   I  T+      G+T+ K +   EK+K      V  D++
Sbjct: 596 S------LKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYL 649

Query: 662 AVVGENRKLLIFS---------IDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           A    + KLL+ S         ID++P   +R  GV+ Q+  DG   DVI       L  
Sbjct: 650 ADPDASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADG---DVIT-----NLQL 701

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           ++         ++D++  + +RG    L  K  P + +
Sbjct: 702 VN---------DDDVIAIVTQRGAFKKLAVKEIPATSR 730


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 396/697 (56%), Gaps = 26/697 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGII + +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGII-QGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  E +RI + 
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 302 LK-KEADSQLVLNYLFKNTDLQVNYNFNMVAID-NMTPVQTGVLQMLRSYVKHREDVIVK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
             RR     EV   +    +  +I  E   V ++  G+I+     S   SAL     ++ 
Sbjct: 478 --RRSELQDEVQTIEIEASE--LIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R    GE + Q L + + ++ ++  
Sbjct: 534 DELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFV 593

Query: 606 FVYDSTC--KLLVVSSKGNAFIVE-ESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
            + D      LLVV+  G    +E ES     T + K+  + K+  E +++ L+  V   
Sbjct: 594 QIVDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFA 653

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
            + ++ EN   L F++D +P + +R  GV+  + K+G
Sbjct: 654 DLMLISENGYALRFNLDDVPVLGARAAGVKAMNLKNG 690


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 231/686 (33%), Positives = 374/686 (54%), Gaps = 41/686 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM +       +  K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSA-SSDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+ P H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSRGIAVGMATNNPPH 192

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ EA    ++N     E + E ++E + GPDFPT G+IV + + I ++Y+ GRG  
Sbjct: 193 NLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGT-QGIEDTYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 KMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + +
Sbjct: 370 LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDIDD 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+   KEI
Sbjct: 430 IQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDEL---KEI 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD--- 539
             K  D  R R     +  AD     + +I +E + V I+  G+ +  K+   HS     
Sbjct: 487 VDKHGDARRTR-----IVPADGQVSDEDLIAREDVVVTITETGYAKRTKTDLYHSQKRGG 541

Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
             +     K+ D +       T D IL  +T G     KAY LP     S    G+ +  
Sbjct: 542 KGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEA---SRTARGQHVAN 598

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEE 648
           L+     + I        Y+    L++ +  G     + S+  +N   G   + +   +E
Sbjct: 599 LLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDE 658

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFS 674
            +  V+    D + +V  NR+ + FS
Sbjct: 659 LVGAVLCSAEDDLLLVSANRQSIRFS 684


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 243/647 (37%), Positives = 342/647 (52%), Gaps = 68/647 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K A+I G+  G 
Sbjct: 91  LRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCAKISGDTSGN 150

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEARM  VA  +L 
Sbjct: 151 YHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARMGAVAAAMLD 210

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN  E+C+A + 
Sbjct: 211 DLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNPTEVCDALIK 270

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+ P+ SI++L E I GPDFPTGGII   R  +   Y+ GR    VRAR  +EE+    
Sbjct: 271 LIEEPDTSIDELCEIIPGPDFPTGGIIC-GRAGVRRGYKTGRSTMVVRARCQIEEMKGNR 329

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES   E VR+V+  K R  DPD
Sbjct: 330 HRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVELK-RGEDPD 388

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  S ++  F L    L  G+ P+ + L  +L E+L HR  V+ RR+ F +   
Sbjct: 389 VILNQLYQFSPLQDTFSLIFLALVDGK-PRELTLKEMLAEFLRHRVTVIRRRTQFLLARA 447

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN-----EDK--------PKPVM------------- 417
            RR   ++GLL+A  NIDEII  IR      E K        P  +M             
Sbjct: 448 RRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDEGFKQFQ 507

Query: 418 -----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID--SLLNSGKQ 470
                   ++LT  Q D IL +RL  L  LE+ ++  E   LL  KE ID   +L S  +
Sbjct: 508 LERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELL--KEIIDYIDILGSPSR 565

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529
               I  ++ E+K  F       +RRT   E+S  +   +  + +I +E + V IS+RG+
Sbjct: 566 INGIIKEDLEEMKRRFGD-----KRRT---EISHEELGNIDLEDLITEETMVVSISHRGY 617

Query: 530 IRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           I+   +   +        +        D ++    A T   +L  +T G     K Y +P
Sbjct: 618 IKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIP 677

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
               L+    G AI  L+ +   + I        ++     +V+++K
Sbjct: 678 Q---LARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTK 721


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 217/688 (31%), Positives = 383/688 (55%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGII-QGVDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 253/703 (35%), Positives = 363/703 (51%), Gaps = 75/703 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K A+I G+  G 
Sbjct: 115 LRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCAKISGDTSGN 174

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEARM  VA  +L 
Sbjct: 175 YHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARMGAVAAAMLD 234

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN  E+C+A + 
Sbjct: 235 DLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNPTEVCDALIK 294

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+ P+ SI++L E I GPDFPTGGII   R  +   Y+ GR    VRAR  +EE+    
Sbjct: 295 LIEEPDTSIDELCEIIPGPDFPTGGIIC-GRAGVRRGYKTGRSTMVVRARCQIEEMKGNR 353

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
             IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES   E VR+V+  K R  DPD
Sbjct: 354 HRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVELK-RGEDPD 412

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  S ++  F L    L  G+ P+ + L  +L E+L HR  V+ RR+ F +   
Sbjct: 413 VILNQLYQFSPLQDTFSLIFLALVDGK-PRELTLKEMLAEFLRHRVTVIRRRTQFLLARA 471

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN-----EDK--------PKPVM------------- 417
            RR   ++GLL+A  NIDEII  IR      E K        P  +M             
Sbjct: 472 RRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDEGFKQFQ 531

Query: 418 -----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID--SLLNSGKQ 470
                   ++LT  Q D IL +RL  L  LE+ ++  E   LL  KE ID   +L S  +
Sbjct: 532 LERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELL--KEIIDYIDILGSPSR 589

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529
               I  ++ E+K  F       +RRT   E+S  +   +  + +I +E + V IS+RG+
Sbjct: 590 INGIIKEDLEEMKRRFGD-----KRRT---EISHEELGNIDLEDLITEETMVVSISHRGY 641

Query: 530 IRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           I+   +   +        +        D ++    A T   +L  +T G     K Y +P
Sbjct: 642 IKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIP 701

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
               L+    G AI  L+ +   + I        ++     +V+++K         E  +
Sbjct: 702 Q---LARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYS 758

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
             ++G   + +   E  +LV        AVVG   ++++ + D
Sbjct: 759 RPKRGG-IIAIKLREGDELV------DAAVVGPGDEIIMVTSD 794


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/460 (41%), Positives = 286/460 (62%), Gaps = 9/460 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG+IV  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIV-GRKGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLFKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L E Q
Sbjct: 373 VIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLDEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              IL+LRLR L K+   ++++E D+L    E+++ +L S
Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILAS 472


>gi|332366844|gb|EGJ44585.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1059]
          Length = 816

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 215/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 SLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 475 GNPRLSELQDTANTIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++ A 
Sbjct: 535 RLIFVSSAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 219/725 (30%), Positives = 400/725 (55%), Gaps = 36/725 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+++ + L++++ GPDFPTGGI++ ++  I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVLGTK-GIREAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
            ++    +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +LAH++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLAHKK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K     +++++  T N
Sbjct: 359 DVVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTSN 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F
Sbjct: 419 QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLEKVVVKELNAVKREF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543
                 G  R T      A     ++A++  E + V++S  G+++  SL+S  S D    
Sbjct: 479 ------GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDN 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
               GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++
Sbjct: 533 GLPAGDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEE 592

Query: 602 IVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKVSSEE----K 649
           I+  F V D    L  + +  + +I + +  +A+ +  +T+       +K+ S +    +
Sbjct: 593 IIRVFEVNDLKANLNFLIATNDGYIKQVT--LADLQPTRTYKSRAITAIKLKSNDSKVVR 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG 708
           +  V   + + + ++      + F I +IP   S+  GV+  + KD    D I   +   
Sbjct: 651 IDQVQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---DDYIVNYVLAD 707

Query: 709 LTWID 713
             +ID
Sbjct: 708 PKYID 712


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 228/696 (32%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L  ID P+I+I +L++YI GPDFPTGG I++  E I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGG-IIQGIEGIKKAYETGKGRVVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 RVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+  
Sbjct: 302 ELKKDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K     +V+ +  TE Q +AI
Sbjct: 361 RTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELIEIKKKFK---- 476

Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           + R  T   E+S  + DK    + M+  E + + ++  G+I+   + S + S +     K
Sbjct: 477 VDRLSTIEAEISEIKIDK----EVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH 660
            +   D   +   + +  N  I + S      TR  K    +KV   +K+  VV++  D 
Sbjct: 593 VYNEKDFKHEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQ 652

Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           +  V  ++ + L +S +++ +   R  GV+  + KD
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 688


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 230/697 (32%), Positives = 399/697 (57%), Gaps = 28/697 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L+++I GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPT-GGIIQGIDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 RVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGLREIIESYLNHQIEVVT 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            R+ + +   ++R+ I++GL+ A   +DE+I +IRN    K     +V+ F  TE Q +A
Sbjct: 360 NRTRYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFDFTEAQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +K+ ++L+      + I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHDALLSVIKDELNEIKKKFK--- 476

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545
            + R  T   E+S  + DK    + M+  E + + +S+ G+I+   + S + S +     
Sbjct: 477 -VDRLSTIEAEISEIKIDK----EVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGL 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ +V
Sbjct: 532 KDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVV 591

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
             +   D       V +  N  I + S      TR  K    +KV   +++  V+++  D
Sbjct: 592 DVYNEKDFNSDAFYVMATKNGMIKKSSVSQFKTTRFNKPLVGMKVKDHDEIVNVIRLESD 651

Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
            +  V  ++ + L +S  ++ +   R  GV+  + KD
Sbjct: 652 QLITVLTHKGMSLTYSTSELSDTGLRAAGVKSINLKD 688


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/620 (32%), Positives = 359/620 (57%), Gaps = 21/620 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EKL+E++ GPDFPTGGII +  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGGII-QGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+  + +
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANPRLS 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L +  +   E+  A       ++I +E   V ++  G+++     S + S+L     ++
Sbjct: 481 EL-QAESQIIEIDTA-------SLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D L     A TT+ +LL +T G     P   L  L  +  GE + Q + +    ++I+ 
Sbjct: 533 DDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILY 592

Query: 605 AFVYDSTCKLLVVSSKGNAF 624
           A +  S  + L ++   N F
Sbjct: 593 ADIVTSFDQGLYLAVTQNGF 612


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/460 (41%), Positives = 286/460 (62%), Gaps = 9/460 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG+IV  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIV-GRKGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLFKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L E Q
Sbjct: 373 VIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLDEIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              IL+LRLR L K+   ++++E D+L    E+++ +L S
Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILAS 472


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/695 (30%), Positives = 385/695 (55%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+I++IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 478 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + + + +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D   T   L  +  G     E  E     T K K+      +++  ++V VT    D 
Sbjct: 595 ILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKD 689


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 204/617 (33%), Positives = 364/617 (58%), Gaps = 20/617 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G     AF+KS
Sbjct: 4   DIQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYTEAR
Sbjct: 64  AKTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +L+ +++D VD    +++ + EPVV P+ FPNLL NG+ GI+ G AT IP+HN
Sbjct: 124 LSKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    ID+P+  +E L++Y+ GPDFPTGGII + ++ ++++Y+ GRG   VRA+
Sbjct: 184 LGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGII-QGKDQLIKAYKTGRGKVVVRAQ 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +  G   IV+TE+P++V K+ L+ K+ EL + + I  + ++RDES      ++  
Sbjct: 243 TEVESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D D +++  F  ++++  +  NM  ++  R P+ + L  I++ ++ HR++V+ RR
Sbjct: 303 LKKDADADQILQYYFKHTNLQINYNFNMVAINKQR-PEQVGLIAIIQAYIDHRKDVVSRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + + +     R  I+ GL+ A   +D++I IIRN    K     ++S +  ++ Q +AI+
Sbjct: 362 TQYDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISEYQFSQAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L     +  ++L+        I  E++ +K+ +  +TD 
Sbjct: 422 TLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDETILMKLIQSELKAIKKAY--ATD- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
              R T  E    +    ++ +I  E +  V++  G+I+  SL+S+ S + + L  ++GD
Sbjct: 479 ---RLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSSLRSYQSSNFADLGLRDGD 535

Query: 550 SLKIALHAHTT-DRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
            + + L AH+T D ++L++  G     P   +  L  +  GE +   I +  ++ I+  +
Sbjct: 536 HV-LYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWKDLGEHLSQRIPIASDEKIIQVY 594

Query: 607 VY--DSTCKLLVVSSKG 621
            Y  DS   +++ + +G
Sbjct: 595 PYAKDSQDTIVLATREG 611


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/697 (31%), Positives = 396/697 (56%), Gaps = 26/697 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGII + +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGII-QGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  E +RI + 
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 302 LK-KEADSQLVLNYLFKNTDLQVNYNFNMVAID-NMTPVQTGVLQMLRSYVKHREDVIVK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
             RR     EV   +    +  +I  E   V ++  G+I+     S   SAL     ++ 
Sbjct: 478 --RRSELQDEVQTIEIEASE--LIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L    +A TT  +LL +  G     P   L   R    GE + Q L + + ++ ++  
Sbjct: 534 DELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFV 593

Query: 606 FVYDSTC--KLLVVSSKGNAFIVE-ESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD 659
            + D      LLVV+  G    +E ES     T + K+  + K+  E +++ L+  V   
Sbjct: 594 QIVDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFA 653

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
            + ++ EN   L F++D +P + +R  GV+  + K+G
Sbjct: 654 DLMLISENGYALRFNLDDVPVLGARAAGVKAMNLKNG 690


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/525 (40%), Positives = 308/525 (58%), Gaps = 25/525 (4%)

Query: 20  VSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           V L  + E R  +L YA S I  RA+PD RDG KPV RRI+  M  MGL       KS+R
Sbjct: 18  VDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSSR 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  AA RYTEAR+ 
Sbjct: 78  VVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARLA 136

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A  +   +DED VDF   Y+   +EP V P+ FPNLL NG +GIAVGMAT++P HN+ 
Sbjct: 137 ASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNLV 196

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA  L+ +PE S+E+L+ ++ GPD P GG+IV   + I E+YR+GRG F  RA   
Sbjct: 197 EVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIV-GLDGIREAYRVGRGKFLTRATAH 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFP 315
           VE V      IVVTE+PY V   ++I +I E + +K++  + D+ D  +     R+V+  
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITDVADLTDRRHGTRLVISV 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           KN   +P+ ++  ++  + +E  F +N NV  +   P  + L  +L+ ++ HR  V+ RR
Sbjct: 316 KN-GYNPEAVLAQLYKHTPLEDSFGIN-NVSLVDGQPHTLGLRELLEVFVRHRLTVVTRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + FR+     R  ++ GLLIA L+IDE+IA+IR+ D        ++  F LTE Q   IL
Sbjct: 374 TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSRLMQVFDLTEPQASYIL 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKST 490
            L+LR L K    +++ E D L  E E ++++L         ++ E+  V E F  S+ T
Sbjct: 434 ELQLRRLTKFSVIELEKERDELAREIEALEAILADEVLLRRVVSRELAAVAEQFGTSRRT 493

Query: 491 DL----GRRRTTFCEVSRADK--------ATLQQAMIEKEPITVV 523
            L    G R T+   V+  +         +T++QA    EP+T++
Sbjct: 494 VLLETSGERVTSSASVAPPEDDASGATGGSTVKQAKASAEPMTLM 538


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 218/697 (31%), Positives = 384/697 (55%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKAIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+  + T
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L        E    D A+L    I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAE----AETIEIDVASL----IVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ ++ 
Sbjct: 533 DDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDESVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKV-SSEEKMKLVVKVTG 658
           A + D   +      +  G     E  E     T K K+  + K+ ++++ +  +  +  
Sbjct: 593 AEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           D V +V  N   L F+I+++P + ++  GV+  + KD
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKD 689


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/606 (33%), Positives = 351/606 (57%), Gaps = 23/606 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+  PK  +   +  TE Q +AI+
Sbjct: 361 SPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 477

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L     +
Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+ I+
Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 591

Query: 604 TAFVYD 609
              V D
Sbjct: 592 YVEVLD 597


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 228/716 (31%), Positives = 396/716 (55%), Gaps = 29/716 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  ID P+ ++++L+  + GPDFPTGGII + ++ I ++Y  GRG   +RA
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGII-QGKDGIRKAYETGRGKIIIRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   ++ 
Sbjct: 242 KAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  +  NM V    R P++M L  +L  ++AHR+EV+  
Sbjct: 302 ELKKDADAEAILNYLYKNTDLQVPYSFNM-VAIHERRPKLMSLPELLDAYIAHRKEVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F ++  + R  I+ GL+ A   +DE+IA IR + DK   K  +++ +  TE Q +AI
Sbjct: 361 RSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++    
Sbjct: 421 VTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RRT   E     K  + +A+I  E + V ++  G+++  S +S+S  +   +  KE 
Sbjct: 479 ---RRTVIEEEIEELKVKV-EALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMKET 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D L   L  +TTD +LL +  G     P   L   R    G+ I  LI L  + ++V A 
Sbjct: 535 DRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVAAV 594

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVKVTGD-- 659
               +++  +L+ V+ +G   +V+ +E+      R  +  + V+ +E   ++     D  
Sbjct: 595 PVSSFNTGEQLIFVTKQG---LVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGC 651

Query: 660 -HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWI 712
            H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++
Sbjct: 652 GHLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGGSFV 707


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 218/721 (30%), Positives = 408/721 (56%), Gaps = 36/721 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +KK
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYTE+
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++ ++  I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTK-GIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRREVLF 373
              +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +L H+++V+ 
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +R+ F ++   +R+EI++GL+ A   +D++I  IR ++DK   K  +++++  T NQ +A
Sbjct: 363 KRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKNNLIAKYEFTPNQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q+K E   L  + +K + +L+      NQ+  ++  VKE+ +   
Sbjct: 423 IVSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILSD-----NQVLEKVV-VKELNAVKK 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFKE 547
           + G  R T      A     ++A++  E + V++S  G+++  S++S  S D S     +
Sbjct: 477 EFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLPD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++I+  
Sbjct: 537 GDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEIIRV 596

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKVSSEE-KMKLVVKV 656
           F + D    L  + +  + +I + +  +A+ +  +T+       +K+ S+E K+  + +V
Sbjct: 597 FEINDLKANLNFLIATNDGYIKQVT--LADLQPTRTYKSRAITAIKLKSKESKVVRIDQV 654

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             D    + ++      + F I +IP   S+  GV+  + KD   +D I   +     ++
Sbjct: 655 KPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---NDYIVNYVLADPKYV 711

Query: 713 D 713
           D
Sbjct: 712 D 712


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 213/623 (34%), Positives = 363/623 (58%), Gaps = 24/623 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+KSA+ VG 
Sbjct: 12  LEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTVGN 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A 
Sbjct: 72  VIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIAA 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H++ E+ +
Sbjct: 132 ELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEVID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +  ID P  +IE+L+  I GPDFPTGGII +  + I ++Y  G+G   +R +  VE +
Sbjct: 192 ATIMRIDKPTCTIEELMTAIQGPDFPTGGII-QGVDGIKKAYETGKGKIIIRGKTEVESI 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSL 320
             G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+    +RIV+  K +  
Sbjct: 251 RGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELK-KDA 309

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +   ++  ++  +D++  +  NM  ++  R P++M L  IL  ++ H+REV+  RS + +
Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKR-PKLMSLANILDAYIDHQREVVTNRSKYEL 368

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLR 437
           Q    R  I+ GL+ A   +DE+IA IR ++DK   K  +++++  TE Q +AI++L+L 
Sbjct: 369 QKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAIVSLQLY 428

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S       RR+
Sbjct: 429 RLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-----RRS 483

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIA 554
                    K  L + M+  E + V ++  G+++  SL+S++  +      K+ D +   
Sbjct: 484 KIEAEIEEIKINL-EVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTDRILAK 542

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
              +TT+ +L+ +  G    +P   L  +  +  G+ I  ++ ++  + IV A     + 
Sbjct: 543 YEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKEFK 602

Query: 610 STCKLLVVSSKGNAFIVEESEII 632
               LL  +  G   +V++SE++
Sbjct: 603 ENQYLLFFTKNG---MVKKSELL 622


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 309/528 (58%), Gaps = 20/528 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V L+  ++  YL YA+S I  RA+P + DG KPVHRR+I+ M + G     +F K A
Sbjct: 23  IDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVHRRVIYGMYDGGFRPDKSFSKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGEV+G  HPHGD  +YD+LVRL QP+  RYPL  GQGNFG+     AAA RYTE +M
Sbjct: 83  RVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALGQGNFGSPGNQGAAAPRYTETKM 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +Q+A  +++ ++E+ VDF D Y+ +  EPVV PS+FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 143 SQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 202

Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+   AL  ++NP+ +    +E L+E I GPDFPT   I+ +R  I ++YR GRG   +
Sbjct: 203 REVSAGALWALENPDATREELLEALMERIPGPDFPTAAQILGTR-GIKDAYRTGRGSITM 261

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310
           RA   +EE+ +G  C+V+TE+PYQV    +  KI +L    +I  + DIRDE++     R
Sbjct: 262 RAVVNIEEI-QGRTCLVITELPYQVNPDNVAVKIGDLAREGKITGIADIRDETSGRTGQR 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R     +++ +++  + ++  F  NM  +  G VP+ + LDG +  W+ H+  
Sbjct: 321 LVVVLK-RDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-VPRTLSLDGFVSHWIDHQVN 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ +R++  + R+ IL+G L A   +DE+IA+IR     +     +     + + Q
Sbjct: 379 VIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSPTAQDANEGLQKLLDIDDIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  E   L A     + +L S  +Q   I  E+  + + F 
Sbjct: 439 AQAILDMQLRRLAALERQKIVDEATELEARIADFNDILASPARQRTIIRDELTGIVDRFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                  RRT        D +   + +I +E + + ++  G+I+  +S
Sbjct: 499 DD-----RRTQILHGFDGDVSI--EDLIAEEEMVITVTRDGYIKRTRS 539


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 210/695 (30%), Positives = 382/695 (54%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAID-NFTPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 478 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D       L  +  G     E  E     T K K+      ++    +V VT    D 
Sbjct: 595 ILDDFEAGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDASDCIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           V ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 655 VMIITQKGYALRFNADEVPVVGAKATGVKAINLKD 689


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 222/725 (30%), Positives = 401/725 (55%), Gaps = 36/725 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++ ++  I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTK-GIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
            ++    +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +LAH++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLAHKK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K     ++S++  T N
Sbjct: 359 DVVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLISKYEFTHN 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F
Sbjct: 419 QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543
                 G  R T      A     ++A++  E + V++S  G+++  SL+S  S D    
Sbjct: 479 ------GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDN 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
               GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++
Sbjct: 533 GLPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEE 592

Query: 602 IVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKV-SSEEKMKL 652
           I+  F V D    L  + +  + +I + +  +A+ +  +T+       +K+ S++ K+  
Sbjct: 593 IIRVFEVNDLKANLNFLIATNDGYIKQVT--LADLQPTRTYKSRAITSIKLKSNDSKVVR 650

Query: 653 VVKVTGD---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG 708
           + +V  D    + ++      + F I +IP   S+  GV+  + KD    D I   +   
Sbjct: 651 IDQVQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---DDYIVNYVLAD 707

Query: 709 LTWID 713
             +ID
Sbjct: 708 PKYID 712


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 210/645 (32%), Positives = 364/645 (56%), Gaps = 37/645 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   FKK
Sbjct: 5   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYTE+
Sbjct: 65  AAKAVGNIMGNYHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTES 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P  S+E L+ Y+ GPDFPTG II+ ++  I E+Y+ GRG  +VRA
Sbjct: 185 NLGEVIDATIYLLKHPNASLEDLMNYVKGPDFPTGAIIMGTK-GIKEAYKTGRGRIQVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTEIP++V KS L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 244 KTNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H   V+ +
Sbjct: 304 ELKKDADSQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILASYLEHEEAVVTK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++ +  TENQ +AI
Sbjct: 363 RTKFDLNKAEARLEIIQGLIHAMDILDKVIKTIRASKNKSDAKKNLIASYDFTENQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACEIREVKE 484
           ++L+L  L         +++D L+AE+ K++        LL+  K    +I  E+  VK+
Sbjct: 423 VSLQLYRL-------TNTDVDALIAEQTKLNKLAEKYRKLLSDRKTLEKEIIKELSTVKK 475

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLS 541
            F        RRT   E S A     ++A++  E + V+IS  G+++  S++S+ S D +
Sbjct: 476 EFDNP-----RRTQISEQS-AKVEIDEKALVADEKVRVLISRDGYLKRSSIRSYQSTDDA 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHN 599
                +GD +       T   + L +  G     P   L+  +    G+ +   I L+ +
Sbjct: 530 DNGLPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSD 589

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           + I+  F +D   +    L+ ++ G    +E    +AN +  +T+
Sbjct: 590 EKIIRVFAFDDLNTNSNFLLATNDGYIKQLE----LANLQPTRTY 630


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 53  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 112

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 113 MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 171

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 172 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 231

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 232 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 290

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 291 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 350

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 351 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 408

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 409 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 468

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 469 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 525

Query: 488 K 488
           K
Sbjct: 526 K 526


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 307/499 (61%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G+G      +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  +++ +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L A+++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQRLKLLLDNRDQLLDAMVTELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ FS       RRT   E
Sbjct: 479 KKRFSTP-----RRTRLVE 492


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 250/782 (31%), Positives = 393/782 (50%), Gaps = 90/782 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++A        G  + KSA+IVG+V+G 
Sbjct: 28  MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASKLGNFVAGRPYVKSAKIVGDVMGD 87

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+L RL QP+  R PL+ GQGNFG+ D D  A+ RYTEAR+ +V++ +L 
Sbjct: 88  FHPHGDGAIYDALARLTQPWSMRVPLVDGQGNFGSPDPDPPASMRYTEARLARVSDTLLD 147

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF D Y+    EP V P++FPNLL NG  GIAVGMAT++P HN+ E+ +  LA
Sbjct: 148 DLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEVIDGCLA 207

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ++NP I+ E+L+EYI GPDFPT  +I+ +  +   +Y  GRG   +R R  +E +    
Sbjct: 208 FMENPAITSEELIEYIPGPDFPTAPLILGTSGAKA-AYTTGRGSILMRCRHEIEPLRGDR 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV T IPYQV ++ L+EKIAE    KRI  + DIRDES  D   ++    R    +++
Sbjct: 267 ESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGISDIRDESNRDGTRIVIDLKRDATAEVV 326

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  I+  +  ++ FP NM  +  GR P+ + L   ++ +++ R EV+ RR+ F +     
Sbjct: 327 LNQIWRHTPAQSGFPANMLAIRGGR-PETLMLRDFIQAFISFREEVITRRTKFELNKARE 385

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------------- 418
           R  IL GL++A  N+DE++AIIR    P P                              
Sbjct: 386 RAHILLGLVVAVSNLDEVVAIIRG--APNPATARERLLTKEWPIGDIAQYIRLVEAIEPS 443

Query: 419 -----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                  + L+  QV AIL+LRL  L  L   +I  EL  L  + E+  ++L    + + 
Sbjct: 444 ADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDELKELAEKIEEFLAILADRVKLYE 503

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--- 530
            +  E+ E++  ++             E++ A      + +IE++ + V ++  G+I   
Sbjct: 504 VMREELEEIRATYATP--------RISEIAPAWDGLDDEDLIERDDMVVTVTLDGYIKRT 555

Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAG-- 578
                R+        + +  K+ D++       T + +L  ST GK Y      LP G  
Sbjct: 556 PLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAGKVYRLKVWKLPEGGP 615

Query: 579 --------NLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES 629
                   NLL      E I+ ++ L  ++D   A  V  +T K  V  +  +AF    +
Sbjct: 616 TTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKGNVRRNSMDAF----T 671

Query: 630 EIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMSR--G 684
            I +N   GK  +K   E + +L+   +    D V +  ++ K + F+ + + E +    
Sbjct: 672 NIPSN---GKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDVREFTSRTS 728

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN--DLLGWLGKRGGVGSLVPK 742
            GVR     DG   +V+       L+ + + G +    E       W G++ G   L P+
Sbjct: 729 TGVRGMKLADG--DEVVS------LSTLGATGTTPEEREQYIKFAPWKGEKEGDPDLTPE 780

Query: 743 GF 744
            +
Sbjct: 781 RY 782


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 232/760 (30%), Positives = 410/760 (53%), Gaps = 60/760 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KSA
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN+
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A L L  +P+ +++ L++++ GPDFPTG  IV+  + I ++Y  GRG   VR++ 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGRGKVIVRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++   
Sbjct: 243 KIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +D   ++  +F  +D++  +  NM  +   R P+ + L  IL  +L  ++EV+ +R+
Sbjct: 303 KRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMR-PERLSLKQILVSYLEFQQEVIKKRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+ 
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIVA 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +       
Sbjct: 422 LQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNYRNP---- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGDSL 551
            RRT   +     K +    +I  E + V++S+ G+I+  S++S+    +    K+ D  
Sbjct: 478 -RRTEIQDKVATIKIS-TDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDYP 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYD 609
                 +  D + + ++ G     P   +   R    GE I   I L+++++I+  F + 
Sbjct: 536 IFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFS 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSS-EEKMK----LVVKVTGD 659
           S      +  KG   I  +   I  T+      G+T+ K +   EK+K     +V +  D
Sbjct: 596 S------LKEKGVFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPESRIVAI--D 647

Query: 660 HVAVVGENRKLLIFS---------IDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGL 709
           ++A    + KLL+ S         ID++P   +R  GV+ Q+  DG +  +   K+    
Sbjct: 648 YLADPDASGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDV--ITNLKLV--- 702

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                       +++D++  + +RG    L  K  P + +
Sbjct: 703 ------------NDDDVIAIVTQRGAFKKLAVKEIPATSR 730


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 310/523 (59%), Gaps = 14/523 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M +MGL    A 
Sbjct: 13  VPERIVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRAH 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVR AQPF  R PL+ G GNFG++D    AA RYT
Sbjct: 73  VKSARVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDA-GPAAQRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A L+  G+DED VDF   Y++  +EP V P+ FPNLL NG SGIAVGMAT++P
Sbjct: 132 EARMAPAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNMP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+ +P+  +  L+ ++ GPDFPTGG +V   E I ++Y  GRG FR 
Sbjct: 192 PHNLVEVVNAARHLLKHPDADLPALMRFVPGPDFPTGGRVV-GLEGIRDAYATGRGSFRT 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310
           RA   +E++GR    IVVTE+PY     RLIEKIA+ +  K++  + D+ D S     +R
Sbjct: 251 RASVRIEKIGR-RQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMR 309

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  KN    P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++ HR +
Sbjct: 310 LVIEVKN-GFVPEAVLEQLYRLTPMEESFGINNVALVEGQ-PRTLGLKELLEVFIGHRVD 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ FR+     R+ ++ GLL A ++IDE+IAI+R+ D  +     +  RFSL+E Q
Sbjct: 368 VVRRRTRFRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTERFSLSEAQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+++LR L +    +++ E   L A   ++ ++L+   +    +  E+  V     
Sbjct: 428 GRYILDMQLRRLTRFSRIELEREQAELRATIAQLQAILDDEGRLRGLVGDELAAVAAEHG 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                 RR         A  A   Q  I  +P  V++S+ G +
Sbjct: 488 TP----RRTVLLTSSGPASGAAPTQLEIGDDPCWVLLSSAGLL 526


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 219/695 (31%), Positives = 383/695 (55%), Gaps = 33/695 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI+ AM + G    + F+KSA
Sbjct: 4   IQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G++DGDSAAA RYTEAR+
Sbjct: 64  KTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A+ +L+ +D+D V+    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 124 SKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +A   LID+P  +I KL++++ GPDFPTG II + +E + ++Y  GRG   VR++ 
Sbjct: 184 GEIIDATTYLIDHPNATINKLMDFVPGPDFPTGAII-QGKEELKKAYTSGRGKVVVRSKH 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   IV+TEIPY+V K+ L+ ++ EL + + I  ++++RDE+  +   ++   
Sbjct: 243 HIETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +    D ++   +  SD++  +  NM  ++  R P+++ +   L  ++ HR E++ RR+
Sbjct: 303 KKDASSDAILNYFYKNSDLQINYNFNMVAINDQR-PELVGIREALNAYIGHRYEIIRRRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
           +F +    RR+ I+ GL+ A   +D++IA IR   N+   +  ++  F  +E Q +AI++
Sbjct: 362 TFDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRYNLIEAFDFSEAQAEAIVS 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   +++E   L  +     ++L+  K  + ++  E++ +K+ ++      
Sbjct: 422 LQLYRLTNTDVTALENERLQLNEDIAAYQAILSDDKVLYGRMKSELKAIKKAYASE---- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEG 548
           RR     E+        +Q +I +E + VV++  G+I     RS K+  ++   L  ++G
Sbjct: 478 RRTEIQDEIQEV--IVKKQLLIPEEDVVVVVTRGGYIKRSSLRSFKASGIEEVGL--RDG 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D ++      T D+++ ++  G     P   L   R    GE +   I    ++ I+  F
Sbjct: 534 DHVQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIRWKDLGEHVSQRIAFASDESIIGVF 593

Query: 607 VYDSTCK--LLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTG-- 658
            YD   K  LL+ S+ G      + E  E      K    + +SS+    + V ++ G  
Sbjct: 594 KYDENSKDNLLLASAAGMIKQTALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGAT 653

Query: 659 ----DHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
                 V +V      L +SID+I  +  R KGV+
Sbjct: 654 DQSQAQVILVTHFGFTLRYSIDEISIIGVRAKGVK 688


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 368/647 (56%), Gaps = 44/647 (6%)

Query: 5   NISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           +  N  T++E     + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++
Sbjct: 12  DAGNPETVLEGDVLIDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLY 71

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG
Sbjct: 72  AMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFG 131

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D AAA RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG
Sbjct: 132 SPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNG 191

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVES 235
           +SGIAVGMAT+IP HN++E+ +     + NP  +    +E+LL  + GPDFPTG  I+  
Sbjct: 192 SSGIAVGMATNIPPHNLREVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATIL-G 250

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I
Sbjct: 251 HKGIEDAYRTGRGSVTMRAVVNVEEL-QNRTCLVVTELPYQANPDNLAIKIAELVKDGKI 309

Query: 296 PLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             + D+RDE++     R+V+  K R     +++ +++  +++++ F  NM  +  G VP+
Sbjct: 310 QGIADLRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPR 367

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +  
Sbjct: 368 TLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTT 427

Query: 414 KPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNS 467
           +     ++    + E Q  AIL+++LR L  LE  +I+   SEL+ L+AE    +++L S
Sbjct: 428 EAARDGLMELLDIDELQARAILDMQLRRLAALERQKIQDRHSELEALIAE---YNAILAS 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++Q   I+ E+    EI  K  D   RRT        D +   + +I +E + V I+  
Sbjct: 485 EERQREIISTEL---GEIVDKHGD--DRRTKILMGFDGDMS--MEDLIPEEEMVVTITRG 537

Query: 528 GWIRSLKSHSVDLSALHFK-------EGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGN 579
           G+++  +S +        K        GD +       TT   LL  T+ G+ Y   A  
Sbjct: 538 GYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYE 597

Query: 580 LL-SGR-GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
           L+ +GR   G+ +  L+    ++ I        Y  +  L++ + +G
Sbjct: 598 LMEAGRDAKGQHVANLLAFQPDEHIAQVLDLKDYQQSPYLVLATKRG 644


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 218/690 (31%), Positives = 390/690 (56%), Gaps = 26/690 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D +RI + 
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K  S + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  
Sbjct: 302 LKKDS-NTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI
Sbjct: 360 RSRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F     
Sbjct: 420 VTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
              R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ 
Sbjct: 478 ---RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++  
Sbjct: 534 DRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYT 593

Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGD 659
            + DS       V +  G    V+  E     T K K+  F K+ +E+   + +  +  D
Sbjct: 594 ELLDSFEEGTYFVATKLGQIKRVDRKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLD 653

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
            V +V +N   L F+I+++P + ++  GV+
Sbjct: 654 DVMLVTKNGYALRFNIEEVPVIGTKAAGVK 683


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/492 (40%), Positives = 298/492 (60%), Gaps = 17/492 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+V
Sbjct: 16  TALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCARVV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R++ +
Sbjct: 76  GDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPI 135

Query: 140 AEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           A+  +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN+ E
Sbjct: 136 ADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHNLGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  + LIDNPE+S EKL + I GPDFPTGG I+ S + I E+YR G+G   VR    +
Sbjct: 196 VVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINS-QGIEEAYRHGKGIIPVRGVVKI 254

Query: 259 EEVGRGS------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES      V
Sbjct: 255 QRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRTGMRV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R      +++ ++  + ++  F   M  L +   P  + L  +L+E+L  R + L
Sbjct: 315 VIELKRDAVAKTVLKELYKKTALQQNFGAIMLAL-LDNQPCQLSLRQLLEEFLKFREDTL 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--EDKPKPVMVSR-FSLTENQVD 429
            R+ +  +Q    R+ +L+GLLI+  ++D  I I+R+  +     V   R  +L+E Q +
Sbjct: 374 TRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAKVQFQRDLNLSEAQAN 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL + +R L  LE  ++++E D L  +  ++++LLN+  +    +  E+R +K  +  +
Sbjct: 434 AILAMPMRRLTGLERQKLQAESDELEGKINELETLLNNRPEFLKVLKKELRSLKRKYGDT 493

Query: 490 TDLGRRRTTFCE 501
                RRT   +
Sbjct: 494 -----RRTRIVQ 500


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 209/695 (30%), Positives = 382/695 (54%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+ 
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSC 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAID-NFTPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E D+L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGDERTMFNVMKRELRDIKKKFGND--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 478 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASMIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + + + +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D   T   L  +  G     E  E     T K K+      ++    +V VT    D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKAINLKD 689


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 215/719 (29%), Positives = 400/719 (55%), Gaps = 32/719 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +KK
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYTE+
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++ ++  I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTK-GIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRREVLF 373
              +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +L H+++V+ 
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +R+ F ++   +R+EI++GL+ A   +D++I  IR ++DK   K  +++++  T NQ +A
Sbjct: 363 KRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKNAKNNLIAKYKFTPNQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q+K E   L  + +K + +L+  K     +  E+  VK+ F    
Sbjct: 423 IVSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILSDNKVLEKVVVKELNAVKKEF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFKE 547
             G  R T      A     ++A++  E + V++S  G+++  S++S  S D S     +
Sbjct: 479 --GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLPD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GD +       T D + + +  G     P   L+  +    G+ +   I L+++++I+  
Sbjct: 537 GDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDNDEEIIRV 596

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV----- 656
           F  +   ++   L+ ++ G    V  +++    T K +    +  + K   VV++     
Sbjct: 597 FEINDLKASLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKCKDSKVVRIDQVKP 656

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +   + ++      + F I +IP   S+  GV+  + KD   +D I   +     ++D
Sbjct: 657 DSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---NDYIVNYVLADPKYVD 712


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 213/590 (36%), Positives = 328/590 (55%), Gaps = 44/590 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +     ++  +  YA+S I  RAIPD+RDG KPV RRI+++M E+GLD     +K
Sbjct: 6   ENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKPHRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD+LV + +P+  + PL+ G GNFG+IDGD AAA RYTEA
Sbjct: 66  SARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++  A  +L  +D+  V+F   ++E + EP V P+  PNLL NGT+GIAVGMAT++P H
Sbjct: 126 RLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ E  +A IDNP+I+ E L++YI GPDFPTGG I+ S E I   Y  G G  +VRA
Sbjct: 186 NPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINS-EDIRNIYETGEGRLKVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           +  +E    G   IV+TEIPY V   K++L+E + +L+  K    + D+RDES+ E +R+
Sbjct: 245 KTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGIRV 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K +  D + L+  ++  + ME  + +N+  +   + P V  L  ++ E+++ + E+
Sbjct: 305 VIEVK-KDRDIENLLNGLYKKTSMEDTYGVNLLAVK-DQQPIVFKLKNLVGEFVSFQEEL 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
             +     +   ++R+EI+ GL+ A   ID II I+R     K                 
Sbjct: 363 YTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINFK 422

Query: 417 ------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                   ++   TE Q DAIL + L  L  LE  ++  E  +LL   E+  S+L + K+
Sbjct: 423 TEASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQSILGNKKE 482

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I   ++E K+ F+       R T    +  A+        ++ E I ++I   G+ 
Sbjct: 483 LFKVIKSNLKEYKKQFNVP-----RHTVLANMEIAEYV----EEVKVEDIYILIDKFGYT 533

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALH---AHTTDRILLLSTDGKAYTLPA 577
           +     SVD +++     D+LK  +H      TDR+ L +  G  Y + A
Sbjct: 534 K-----SVDNTSISRVSEDNLKDFVHIVKMKNTDRLCLFTAQGNMYQVKA 578


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 228/716 (31%), Positives = 396/716 (55%), Gaps = 29/716 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  ID P+ ++++L+  + GPDFPTGGII + ++ I ++Y  GRG   +RA
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGII-QGKDGIRKAYETGRGKIIIRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   ++ 
Sbjct: 242 KAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  +  NM V    R P++M L  +L  ++AHR+EV+  
Sbjct: 302 ELKKDADAEAILNYLYKNTDLQVPYSFNM-VAIHERRPKLMSLPELLDAYIAHRKEVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F ++  + R  I+ GL+ A   +DE+IA IR + DK   K  +++ +  TE Q +AI
Sbjct: 361 RSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++    
Sbjct: 421 VTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RRT   E     K  + +A+I  E + V ++  G+++  S +S+S  +   +  KE 
Sbjct: 479 ---RRTVIEEEIEELKVKV-EALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMKET 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D L   L  +TTD +LL +  G     P   L   R    G+ I  LI L  + ++V A 
Sbjct: 535 DRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVAAV 594

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVKVTGD-- 659
               +++  +L+ V+ +G   +V+ +E+      R  +  + V+ +E   ++     D  
Sbjct: 595 PVSSFNTGEQLVFVTKQG---LVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGC 651

Query: 660 -HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWI 712
            H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++
Sbjct: 652 GHLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGSSFV 707


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 209/695 (30%), Positives = 385/695 (55%), Gaps = 24/695 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 24  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 83

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 84  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 143

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 144 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 203

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 204 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 262

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 263 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 322

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 323 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVAR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+I++IR   N+   K  +   +  +E Q +AI+
Sbjct: 382 SKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIV 441

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 442 TLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND--- 498

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 499 -RRSELQAETKTIEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDD 555

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L  +  +  GE + Q + + + +++++ A 
Sbjct: 556 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 615

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DH 660
           + D   T   L  +  G     E  E     T K K+      +++  ++V VT    D 
Sbjct: 616 ILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDD 675

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + ++ +    L F+ D++P + ++  GV+  + KD
Sbjct: 676 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKD 710


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 211/643 (32%), Positives = 358/643 (55%), Gaps = 30/643 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ ++ +L+E I GPDFPTGGII +  + I ++Y  G+G   VR +  VE +  G   
Sbjct: 198 DSPDCTVTELMEVIKGPDFPTGGII-QGVDGIRKAYETGKGKVIVRGKAEVETIRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++AH++EV+  RS + +Q    R 
Sbjct: 317 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLTAILDAYIAHQKEVVTNRSIYELQKAKDRH 375

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR+ +  +     ++S+F  TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSILDEVIATIRSSNDKRDAKNNLISKFEFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L    ++++S+LN+ K+    I   ++++K+ ++       RR+   E   
Sbjct: 436 TALKEEAEELSKNIQELESILNNDKKLLKVITSSLKKLKKTYADG-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D L      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRLLHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +L+ +  G     P   L  +  +  G+    +I ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLMFTNKGSYIYCPVHQLPDIRWKDMGQHFTNMISIDRDETIVKAIPIKEFDPSAYLLF 609

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +  G   +V+++E+        T  K     K  + + V GD
Sbjct: 610 FTKNG---MVKKTEL--------THYKAQRYSKALVALNVKGD 641


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 217/629 (34%), Positives = 349/629 (55%), Gaps = 34/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 13  DRVEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPERGYVK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ V + +G  HPHGD ++Y +LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 73  SAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT +A  +++ + E+ VDF+  Y+ +  EPV+ PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +A   L+DN       ++E  ++ + GPDFPT G+IV  +  I ++YR GRG  
Sbjct: 193 NLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDK-GIQDAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I  +  I DES++ V 
Sbjct: 252 RMRGVTSIEEEG-NRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGIARIDDESSDRVG 310

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K  ++ P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+
Sbjct: 311 LRIVVTLKRDAI-PRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQMLRYYVKHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 369 IEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIAREGLIDLLDIDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE  +I   L  +      +  +L   ++Q + +  E+ E+ E 
Sbjct: 429 IQANAILEMQLRRLAALERQKIIDALAEIEETIADLKDILARPERQRDIVRGELEEIVEK 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538
           F        RRT     S       ++ +I +E + V I++ G+ +  K  S        
Sbjct: 489 FGDE-----RRTKIVAAS---GDVSEEDLIARENVVVTITSTGYAKRTKVDSYRSQRRGG 540

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++
Sbjct: 541 KGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEASRTARGQHVANLLE 600

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKG 621
               + I        Y+    L++ +S G
Sbjct: 601 FQPGEQIAQVIQIQSYEDAPYLVLATSHG 629


>gi|332360267|gb|EGJ38080.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK355]
          Length = 817

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 215/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +EE   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 218/697 (31%), Positives = 384/697 (55%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKAIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+  + T
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L        E    D A+L    I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAE----AETIEIDVASL----IVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ ++ 
Sbjct: 533 DDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKV-SSEEKMKLVVKVTG 658
           A + D   +      +  G     E  E     T K K+  + K+ ++++ +  +  +  
Sbjct: 593 AEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           D V +V  N   L F+I+++P + ++  GV+  + KD
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKD 689


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 211/667 (31%), Positives = 372/667 (55%), Gaps = 33/667 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++ ++  I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTK-GIKEAYKTGRGRIKV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS-LTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  ++++++  TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSAL 543
                 RRT   E S A     ++A++  E + V+IS  G+     +RS +S + D + L
Sbjct: 481 P-----RRTQISEES-AKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
              +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ 
Sbjct: 535 --PDGDKVVYKNTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQ 592

Query: 602 IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I+  FV+D   + C  ++ ++ G    +E    +AN +  +T+     + +    +K+ G
Sbjct: 593 IIRVFVFDKLNTDCNFILATNDGYIKQLE----LANLQPTRTY-----KSRAMTAIKLKG 643

Query: 659 DHVAVVG 665
               VVG
Sbjct: 644 KDSYVVG 650


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 214/581 (36%), Positives = 339/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 136 SRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETYLSGRGSITM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IA+++  K++  + DIRDES  D
Sbjct: 255 RGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ ++T F  NM  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGE-PVILSLRKMLQVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + +R+ + ++  + R  IL GLL+A   +DEII++IR   +    K  +     LT+
Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHGLTD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +     E+ E+KE 
Sbjct: 434 IQSDAILQMQLRRLTALEADKIRLEHEDLVKKITDLKDILNKKERVFEITKIELNEIKEK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
           ++      +RRT   ++       L+   +I  E   V+++  G+++ +  +  + ++  
Sbjct: 494 YNT-----QRRTEILDLG----GGLEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      + +K  +  +  D +LL S  G +Y LPA
Sbjct: 545 TRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPA 585


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 218/697 (31%), Positives = 384/697 (55%), Gaps = 28/697 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+ ++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGAII-QGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+  + T
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATPRLT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
           +L        E    D A+L    I +E   V ++  G+I+     S + S +     ++
Sbjct: 481 ELQAE----AETIEIDVASL----IVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D L     A TT  +L+ +  G     P   L   R    GE + Q + +   ++ ++ 
Sbjct: 533 DDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLY 592

Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKV-SSEEKMKLVVKVTG 658
           A + D   +      +  G     E  E     T K K+  + K+ ++++ +  +  +  
Sbjct: 593 AEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIAL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           D V +V  N   L F+I+++P + ++  GV+  + KD
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKD 689


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 310/517 (59%), Gaps = 19/517 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G+G      I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L  G+ P  + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQ-PVQLTLKKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDKP--KPVMVSRFS 422
             R   +  RS++ ++ I  R EI+  L+ A  N+ ++I +I +++D P  K  ++    
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           K+ F       +RRT   E      A + + M  + P
Sbjct: 479 KKRFG-----SKRRTKLIE---GGDALIAEKMANQRP 507


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 252/782 (32%), Positives = 400/782 (51%), Gaps = 56/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N  TL+ E  K  S      E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 17  VHNDRTLLVELHKEAS------ESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELG 70

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ-----------RYPLISG 114
           L      +K AR+VGEV+GK HPHGD +VYD+LVRLAQ               R PLISG
Sbjct: 71  LASKKPHRKCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISG 130

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            GNFG++DGD AAA RYTE R+  ++E ++L  +D D VDF   ++    EPVV P++ P
Sbjct: 131 HGNFGSLDGDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLP 190

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           N+L NG SGIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+
Sbjct: 191 NVLINGASGIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL 250

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEV-GRGS-WCIVVTEIPYQVQKSRLIEKIAELII 291
                I +++R GRG   VR +   EE+ G+ S   I++TEIPY   KS L+ KIAEL+ 
Sbjct: 251 -GISGIADAFRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVN 309

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           +K +  + DIRDES      ++    R     +++ +++  + +++RF  N+ V  + + 
Sbjct: 310 SKTLEGVSDIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNL-VGILNKE 368

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+V  +  +L+ +L  R  V+ RR+   +   + R  +L+G L     +D+++ ++++  
Sbjct: 369 PEVFSIKRLLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAK 428

Query: 412 KPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                M +    F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL S 
Sbjct: 429 DSASAMQALQKDFELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASNLRELL-SN 487

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           KQ+  ++       KE  +   + G  R T  E    D       +I      + +S +G
Sbjct: 488 KQRVLRVV-----EKEALALKNEFGSPRRTVLE-EDGDGRIDNIDVIPNNESFLTLSEKG 541

Query: 529 WIRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+ ++          +   S    K  D +  +      D +L+ S  G  Y+  A  +
Sbjct: 542 YIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQV 601

Query: 581 --LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
              S    G  I  ++ +   + I + F    +     L++++SKG     E     +  
Sbjct: 602 PECSRTSAGVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIR 661

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694
            +G   +++   +++K V   T      +G    + + +  +   M RG +G+R    K+
Sbjct: 662 PQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMRRGARGLRAMRIKE 721

Query: 695 GGISDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWL--GKRGGVGSLVP-KGFPR 746
           G   ++    I  G  W +S           RS+     WL      G+   VP   FPR
Sbjct: 722 G--DEIAAIDIVPGSVWKESPTLLCTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPR 779

Query: 747 SG 748
            G
Sbjct: 780 HG 781


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  353 bits (906), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 203/492 (41%), Positives = 296/492 (60%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   +E  +L YA S I  RA+PD RDG KPV RRII+ M++MGL     + K
Sbjct: 17  ERIVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMADMGLRPDRPYVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  + QG+DED VDF   Y+ +  +P V P+  PNLL NG +GIAVGMAT++  H
Sbjct: 136 RMAPAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVNGATGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +P+ ++E L+ ++ GPD PTGG IV   + + ++YR GRG FR RA
Sbjct: 196 NLVEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRGAFRTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              VE V      IVVTE+PY V   ++IEKI E + +K++  + D+ D  +    +R+V
Sbjct: 255 TARVENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGISDVVDLTDRQHGLRLV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K     P+ ++E ++  + +E  F +N   L  G+ P+ + L  +L+ W+ HR EV+
Sbjct: 315 IEVKT-GFHPEAVLEQLYRHTPLEDSFSVNNVALVDGQ-PRTLGLVDLLRVWVDHRLEVV 372

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RR+S+R+     R+ +++GLLIA L+IDE+I +IR  D        + S F L+E Q +
Sbjct: 373 RRRTSYRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGRLRSVFDLSEPQAE 432

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L +    +++ E D L  E  ++ ++L          + E+ EV   +   
Sbjct: 433 YILELRLRRLTRFSRIELERERDELTDEIARLQAILADDGLLRTVTSDEMAEVAATYGTP 492

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 493 -----RRTVLLE 499


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 220/698 (31%), Positives = 392/698 (56%), Gaps = 27/698 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KSA
Sbjct: 7   IQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKGFRKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG VIG  HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR+
Sbjct: 67  KTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +++ +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IPSHN+
Sbjct: 127 SKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPSHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LID+P+ S+  L++Y+ GPDFPTG I+ +  + I ++Y  G+G   VR++ 
Sbjct: 187 GEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAIL-QGVDGIKKAYETGKGKIIVRSKT 245

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV  G   IV+ EIPY+V K+ L+ K+ E+ + KR+  + ++RDES  +   ++   
Sbjct: 246 RIEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQIVVEL 305

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +   ++  +   +D++  +  NM  +   R P+ + +  +L+ +L H++EV+ RR+
Sbjct: 306 KKEANAGGILNYLLKNTDLQVAYNFNMVAIDKKR-PKQVGIVRMLQAYLDHKQEVITRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  I+ GL+ A   +D++I  IR ++DK   K  ++ RF  TE Q +AI++
Sbjct: 365 NYNLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIERFDFTEIQAEAIVS 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   +++E D L  +    + +L S ++    +  E+ EVK+ ++      
Sbjct: 425 LQLYRLTNTDITALENEADALNKDIMAYNKILGSSQELNKVMKKELIEVKKKYASP---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGDS 550
             R T  E    +     + +I  E + V ++  G+I+  SL+S+S    + +  KEGD 
Sbjct: 481 --RLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYIKRTSLRSYSASKPTEIGIKEGDY 538

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +T + +L+ ++ G     P   +  L  +  G+ +   I    ++ +V  F  
Sbjct: 539 PIYIQQLNTLNHLLIFTSKGNIIYRPIHEISDLRWKDMGDHLSQNIAFETDETVVKVFGL 598

Query: 609 DST---CKLLVVSSKGNAFIVEESE-IIANTRKGKTF----LKVSSEEKMKLVV--KVTG 658
           +          ++ +G       SE +I    K K+F    LK +++E + +V   K   
Sbjct: 599 EKQLPPATFTFITKEGYIKQTAVSEYVIGRNYKNKSFSAIKLKTTTDELLNIVYTEKPLS 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
             V +V      L + +D++P + ++  GV+  + KDG
Sbjct: 659 KDVFLVTNRGFGLRYPLDEVPTVGAKAAGVKSINLKDG 696


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 297/487 (60%), Gaps = 19/487 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK
Sbjct: 44  MERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGK 103

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+  +A   +L
Sbjct: 104 YHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAPIAMGAML 163

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN+ E+ +  +
Sbjct: 164 EGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 223

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG   VR    +E + RG
Sbjct: 224 GLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRGLIPVRGVSHIETI-RG 281

Query: 265 S-------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     IV+TE+P+QV K+  IEKIA L+   ++  + D+RDES      V+    
Sbjct: 282 EKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTGMRVVIELK 341

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +P+ +++ ++ ++ +++ F +    L +   P  M L  IL+E+L  R + L R+  
Sbjct: 342 RDAEPNAILQKLYRMTPLQSNFGVIFLAL-VNNQPVQMSLRQILQEFLQFREDTLLRQYE 400

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNL 434
             +    RR+E+L GLLI   N+D +I I+R   +    K  +  R  ++  Q DAIL +
Sbjct: 401 NELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQQGDAILGM 460

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +R +  LE  +++ E  +L    E++++L+   +++   +  E+R +K+ F+       
Sbjct: 461 PMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFAD-----E 515

Query: 495 RRTTFCE 501
           RRT   +
Sbjct: 516 RRTKILQ 522


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
           G  R +  + +         ++I +E   + ++  G+I+     S   S L     ++ D
Sbjct: 475 GNPRLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 240/709 (33%), Positives = 388/709 (54%), Gaps = 39/709 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   +
Sbjct: 196 PHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D
Sbjct: 255 RGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGE-PILLTLRKMLEVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L++
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQER 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--L 543
           +       RRRT   ++           +I  E   V+++  G+++ +     + ++   
Sbjct: 494 YPT-----RRRTEILDLG---GGLSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGT 545

Query: 544 HFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             K G      D++K+ +  +  D ++L S  G +Y LPA  +   S    G  +  L+ 
Sbjct: 546 RGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLP 605

Query: 596 LNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +   + I T       S    LV+ ++G           +N R     + ++ EE   L 
Sbjct: 606 IPREEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRS-NGLIAINLEEGDALT 664

Query: 654 ---VKVTGDHVAVVGENRKLLI---FSIDQIPEMSR-GKGVRLQSYKDG 695
              + V GD V ++G    + I    S +++  + R  +GVR  + +DG
Sbjct: 665 WVRLAVPGDSV-LIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDG 712


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 219/725 (30%), Positives = 399/725 (55%), Gaps = 36/725 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++ ++  I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTK-GIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
            ++    +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +LAH++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLAHKK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K     +++++  T N
Sbjct: 359 DVVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTTN 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F
Sbjct: 419 QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543
                 G  R T      A     ++A++  E + V++S  G+++  SL+S  S D    
Sbjct: 479 ------GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDN 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
               GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++
Sbjct: 533 GLPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEE 592

Query: 602 IVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKVSSEE----K 649
           I+  F V D    L  + +  + +I + +  +A+ +  +T+       +K+ S +    +
Sbjct: 593 IIRVFEVNDLKANLNFLIATNDGYIKQVT--LADLQPTRTYKSRAITAIKLKSNDSKVIR 650

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG 708
           +  V   + + + ++      + F I +IP   S+  GV+  + KD    D I   +   
Sbjct: 651 IDQVQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---DDYIVNYVLAD 707

Query: 709 LTWID 713
             +ID
Sbjct: 708 PKYID 712


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 345/606 (56%), Gaps = 16/606 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++ + + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGT-QGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   E S   K   ++A++  E + V+IS  G+++  SL+S+ S D +     
Sbjct: 481 -----RRTEISEESAKVKID-EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS 610
            FV+DS
Sbjct: 595 VFVFDS 600


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 211/667 (31%), Positives = 372/667 (55%), Gaps = 33/667 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++ ++  I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTK-GIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS-LTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  ++++++  TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSAL 543
                 RRT   E S A     ++A++  E + V+IS  G+     +RS +S + D + L
Sbjct: 481 P-----RRTQISEES-AKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
              +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ 
Sbjct: 535 --PDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQ 592

Query: 602 IVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I+  FV+D   + C  ++ ++ G    +E    +AN +  +T+     + +    +K+ G
Sbjct: 593 IIRVFVFDKLNTDCNFILATNDGYIKQLE----LANLQPTRTY-----KSRAMTAIKLKG 643

Query: 659 DHVAVVG 665
               VVG
Sbjct: 644 KDSYVVG 650


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 343/589 (58%), Gaps = 20/589 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  +   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR+  +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLAAIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P  S++ L+E++ GPDFPTGGII + +E I ++Y  G+G   +R +  +E +  G   
Sbjct: 198 DSPNCSVDDLMEFVKGPDFPTGGII-QGKEGIKKAYETGKGKIIIRGKAEIETIRGGRQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIP++V K+ L++K+ E  I +++  + ++RDE+    +RIV+  K  +    +L 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELKKEADAQGILN 316

Query: 327 ESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
              F+  + + + P N N++++  R P +M L  IL  ++ H++EV+  RS + ++    
Sbjct: 317 ---FLYKNTDLQIPYNFNMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQYELKKAKE 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442
           R  I++GL+ A   +DE+IA IR+ +  +     ++ +F+ TE Q +AI++L+L  L   
Sbjct: 374 RHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEKFAFTEPQAEAIVSLQLYRLTNT 433

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  + ++++ +L++ K+    I   +++VK+ ++      +RR+   E 
Sbjct: 434 DITALQEEAKELDQKIKELEEILSNDKKLLKVIKDSLKKVKKTYA-----SQRRSVIEEK 488

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHT 559
               K  L + M+  E + V ++  G+I+     S   S       K+ D L   L  +T
Sbjct: 489 IEEIKINL-EVMVASEDVYVTVTKDGYIKRTSQRSFAASNGQDFGMKDTDRLLCQLEMNT 547

Query: 560 TDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           TD +LL +  G     P   L  +  +  G+ I  +I ++ ++ IV A 
Sbjct: 548 TDVLLLFTNKGSYVYCPVHQLPDIRWKDLGQHITNIISIDSDESIVKAI 596


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 221/725 (30%), Positives = 401/725 (55%), Gaps = 36/725 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++ ++  I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTK-GIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRR 369
            ++    +  D   ++  +F  +D++  +  N N++++ R+ P  + L  IL  +LAH++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSY--NFNMVAIDRMTPVQVGLKRILSSYLAHKK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR+    K     +++++  T N
Sbjct: 359 DVVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTPN 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F
Sbjct: 419 QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543
                 G  R T      A     ++A++  E + V++S  G+++  SL+S  S D    
Sbjct: 479 ------GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDN 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601
               GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++
Sbjct: 533 GLPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEE 592

Query: 602 IVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKV-SSEEKMKL 652
           I+  F V D    L  + +  + +I + +  +A+ +  +T+       +K+ S++ K+  
Sbjct: 593 IIRVFEVNDLKANLNFLIATNDGYIKQVT--LADLQPTRTYKSRAITAIKLKSNDSKVVR 650

Query: 653 VVKVTGD---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG 708
           + +V  D    + ++      + F I +IP   S+  GV+  + KD    D I   +   
Sbjct: 651 IDQVQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKD---DDYIVNYVLAD 707

Query: 709 LTWID 713
             +ID
Sbjct: 708 PKYID 712


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E +++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANSELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RISELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E +++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 217/703 (30%), Positives = 402/703 (57%), Gaps = 36/703 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++++++E +L+ ++++ V F   Y++   EP+V P++ PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++Y+ GPDFPT G I++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKFIDNPDITVAQLMKYVKGPDFPT-GGIIQGIDGIKKAYETGKGKIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTE+PY+V KS L++K+ EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEDEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + ++  ++  +D++  +  NM  +S GR P +M +   +  +L H+ +V+
Sbjct: 300 AIELKKDVNSEAVLNYLYKNTDLQVAYNFNMVAISEGR-PVLMGIRQFIDSYLNHQIDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+ I++GL+ A   +DE+I +IR   N+   K  +V+ F  TE Q +
Sbjct: 359 TKRTRYELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E D L +   ++ ++L+      N I  E+ E++  F + 
Sbjct: 419 AIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHSALLNVIKEELTEIRNRFKQ- 477

Query: 490 TDLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-LSALH 544
              GR  +   E+S  + DK    + MI  E + + ++  G+I+  SL+S++   ++ + 
Sbjct: 478 ---GRLSSIEAEISEIKIDK----EVMIPSETVIMSVTKHGYIKRTSLRSYNASGVNEIG 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K+GD L      +T D  L+ +  G+   +P   L  +  +  G+ +  ++ L+  +  
Sbjct: 531 VKDGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKELGQHVSQIVPLDEGE-- 588

Query: 603 VTAFVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLV 653
              F+ D+ C+         +++++          +   +R  K    +KV  ++++  V
Sbjct: 589 ---FIIDAYCESDFKPDAFYILATRHGMIKRSNVSMFKTSRFNKPLVAMKVKDDDEIINV 645

Query: 654 VKVTGDHVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694
           +++    +  V  N+ + L +S D++ +   R  GV+  + KD
Sbjct: 646 MRIDSTQLITVITNKGMSLTYSSDELSDTGLRAAGVKSINLKD 688


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  352 bits (904), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 383/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTDLILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEE-TCVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V  N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVK 683


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E +++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEGDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 345/606 (56%), Gaps = 16/606 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++ + + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGT-QGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   E S   K   ++A++  E + V+IS  G+++  SL+S+ S D +     
Sbjct: 481 -----RRTEISEESAKVKID-EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS 610
            FV+DS
Sbjct: 595 VFVFDS 600


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 222/703 (31%), Positives = 404/703 (57%), Gaps = 29/703 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+KSA+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEAR++++A  +L+ +
Sbjct: 78  PHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEARLSKIAAELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   +++ + EPVV P+KFPNLL NG++GI+ G AT IP H++ E+ +  +  +
Sbjct: 138 DKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPHHLGEVIDGVIMQM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +NP +++++L++ I GPDFPTGG IV+  E I ++Y  G+G   VR +  +E++  G   
Sbjct: 198 ENPNVTLDELMQVIKGPDFPTGG-IVQGIEGIRQAYSTGKGKVVVRGKAEIEDLRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++    +RIV+  K +  D + ++
Sbjct: 257 IVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVVELK-KDADANGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + +F  +D++  +  NM V    + P++M L  +++ ++ H+++V+ RR+++ +Q    R
Sbjct: 316 QYLFKNTDLQITYNFNM-VAIHNKTPRLMGLKSLIQAYIDHQKDVIIRRATYDLQKAKDR 374

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             I++GL+ A   +D++I  IR ++DK   K  ++++F  TE Q +AI+ L+L  L   +
Sbjct: 375 QHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQFDFTEAQAEAIVTLQLYRLTNTD 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ E   L     +++++L S K+    +  E+  +K+ F+       RRT   +  
Sbjct: 435 ITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQFTDE-----RRTIIKKEI 489

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSAL-HFKEGDSLKIALHAHTT 560
              K T+   ++  E + V ++  G+++  SL+S++     L   KEGD L      +T 
Sbjct: 490 EEIKITM-DVLVASEDVMVTVTKEGYVKRTSLRSYAASNGELPGMKEGDYLLGRYEMNTQ 548

Query: 561 DRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D +LL +  G    LP   L  +  + +G+ +  L+ ++ + DI+T      +     LL
Sbjct: 549 DTLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDDILTTLAVKEFSEEESLL 608

Query: 616 VVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIF 673
            ++ +G A   + S   A    K    LK+  ++++  V++ +G+    +  +    L F
Sbjct: 609 FITRQGMAKRSQLSLYKAQRFSKPLMALKLKDDDEVVSVMRTSGNEEVFIATSFGYGLWF 668

Query: 674 S---IDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
           S   I Q+ + + G KG+ L++  D  + D   F + + + ++
Sbjct: 669 SENEISQVGQRAAGVKGINLKN--DDAVVDATTFTLNDRVEFL 709


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 345/606 (56%), Gaps = 16/606 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++ + + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGT-QGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   E S   K   ++A++  E + V+IS  G+++  SL+S+ S D +     
Sbjct: 481 -----RRTEISEESAKVKID-EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS 610
            FV+DS
Sbjct: 595 VFVFDS 600


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 194/487 (39%), Positives = 297/487 (60%), Gaps = 19/487 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK
Sbjct: 20  MERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGK 79

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+  +A   +L
Sbjct: 80  YHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAPIAMGAML 139

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           +G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN+ E+ +  +
Sbjct: 140 EGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 199

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG   VR    +E + RG
Sbjct: 200 GLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRGLIPVRGVSHIETI-RG 257

Query: 265 S-------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     IV+TE+P+QV K+  IEKIA L+   ++  + D+RDES      V+    
Sbjct: 258 EKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTGMRVVIELK 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  +P+ +++ ++ ++ +++ F +    L +   P  M L  IL+E+L  R + L R+  
Sbjct: 318 RDAEPNAILQKLYRMTPLQSNFGVIFLAL-VNNQPVQMSLRQILQEFLQFREDTLLRQYE 376

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNL 434
             +    RR+E+L GLLI   N+D +I I+R   +    K  +  R  ++  Q DAIL +
Sbjct: 377 NELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQQGDAILGM 436

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +R +  LE  +++ E  +L    E++++L+   +++   +  E+R +K+ F+       
Sbjct: 437 PMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFAD-----E 491

Query: 495 RRTTFCE 501
           RRT   +
Sbjct: 492 RRTKILQ 498


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTREEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E +++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V  N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVK 683


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 212/623 (34%), Positives = 363/623 (58%), Gaps = 24/623 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+KSA+ VG 
Sbjct: 12  LEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTVGN 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A 
Sbjct: 72  VIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIAA 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H++ E+ +
Sbjct: 132 ELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEVID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +  ID P  +IE+L+  I GPDFPTGGII +  + I ++Y  G+G   +R +  VE +
Sbjct: 192 ATIMRIDKPTCTIEELMTAIQGPDFPTGGII-QGVDGIKKAYETGKGKIIIRGKTEVESI 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSL 320
             G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+    +RIV+  K +  
Sbjct: 251 RGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELK-KDA 309

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +   ++  ++  +D++  +  NM  ++  R P++M L  IL  ++ H+REV+  RS + +
Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKR-PKLMSLANILDAYIDHQREVVTNRSKYEL 368

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLR 437
           Q    R  I+ GL+ A   +DE+IA IR ++DK   K  +++++  TE Q +AI++L+L 
Sbjct: 369 QKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAIVSLQLY 428

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S       RR+
Sbjct: 429 RLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-----RRS 483

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIA 554
                    K  L + M+  E + V ++  G+++  SL+S++  +      K+ D +   
Sbjct: 484 KIEAEIEEIKINL-EVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTDRILAK 542

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
              +TT+ +L+ +  G    +P   L  +  +  G+ I  ++ ++  + IV A     + 
Sbjct: 543 YEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKEFK 602

Query: 610 STCKLLVVSSKGNAFIVEESEII 632
               LL  +  G   +V++SE++
Sbjct: 603 ENQYLLFFTKNG---MVKKSELL 622


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 204/551 (37%), Positives = 333/551 (60%), Gaps = 24/551 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++ MS MGL    A  K
Sbjct: 19  EKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG+++ D  AA RYTEA
Sbjct: 79  CARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLN-DGPAASRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG+SGIAVGMATSIP H
Sbjct: 138 RLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+  E Y  G+G F++RA
Sbjct: 198 NLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAFKEIYATGKGSFKIRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           +  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + D+ D S     +++V
Sbjct: 257 KISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKLV 316

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  +  P+ +M++++  + +E  F +N   L  G+ P+ + +  +LK ++ HR  V+
Sbjct: 317 IGIKP-NFSPNEVMDNLYRHTPLEESFSVNSVALIDGK-PKTLGMLDMLKVFIDHRVCVI 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS F +    +R+ ++ GLL+A ++ID+ I+IIRN +  K     ++   ++T +Q +
Sbjct: 375 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSK 488
            IL++RL  L KL   +++SE + L    + ++ +L+      N+I A  I E+K++  +
Sbjct: 435 YILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILS----DPNKIDAILIDELKKVAQR 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              L   R T  E S   K           P  VV++  G+I +++ ++  +S L   + 
Sbjct: 491 ---LPSPRRTILESSVKSKKQKTDY-----PRQVVLTTNGFIFTIEVNNDLISEL--SQP 540

Query: 549 DSLKIALHAHT 559
           ++  +A + H+
Sbjct: 541 ETFDMAFNTHS 551


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 19/517 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G+G      I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L  G+ P  + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQ-PVQLTLRKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422
             R   +  RS++ ++ I  R EI++ L+ A  N+ ++I +I N +D P  K  ++    
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           K+ F       +RRT   E      A + + M  + P
Sbjct: 479 KKRFG-----SKRRTKLIE---GGDALIAEKMANQRP 507


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 194/481 (40%), Positives = 292/481 (60%), Gaps = 12/481 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IV+TE+PY V   ++IE+I++ +  +++  +    D  +     R
Sbjct: 255 RAATHIEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 315 IVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F L E Q
Sbjct: 373 VIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E+ E  +
Sbjct: 433 AQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--EMDEAVA 489

Query: 488 K 488
           K
Sbjct: 490 K 490


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 339/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 136 SRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y  G+G   +
Sbjct: 196 PHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETYLSGKGSITM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IA+++  K++  + DIRDES  D
Sbjct: 255 RGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ ++T F  NM  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGE-PVILSLRKMLQVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + +R+ + ++  + R  IL GLL+A   +DEII++IR   +    K  +     LT+
Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHGLTD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +     E+ E+KE 
Sbjct: 434 IQSDAILQMQLRRLTALEADKIRLEHEDLVKKIIDLKDILNKKERVFEITKIELNEIKEK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
           ++      +RRT   ++       L+   +I  E   V+++  G+++ +  +  + ++  
Sbjct: 494 YNT-----QRRTEILDLG----GGLEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      + +K  +  +  D +LL S  G +Y LPA
Sbjct: 545 TRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPA 585


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 332/578 (57%), Gaps = 20/578 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + +ID+P   ++KL+E + GPDFPTGGII  + E I ++Y  G+G   VR+R
Sbjct: 183 LSEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAE-IKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  R+P + ++RDES      +   
Sbjct: 242 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 302 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFA----- 475

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           G R +     S+A   D A+L    I +E   V ++  G+I+     S   S+L     +
Sbjct: 476 GPRLSELQAESQAIEIDSASL----ILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           + D L     A TTD +LL +  G     P   L   R
Sbjct: 532 DDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLR 569


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/587 (34%), Positives = 353/587 (60%), Gaps = 18/587 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD+++R +Q +  R+ L+   GN G+IDGD  AA RYTEAR++ ++  +L+ +
Sbjct: 78  PHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTEARLSAISAELLKDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++D VDF   +++   EPVV PS+FPNLL NG++GI+ G AT IP H++ E+ +AA+  +
Sbjct: 138 EKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPHHLGEVIDAAIHHM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           ++P+ +++ L+++I GPDFPTGG I +  + + ++Y  G+G   +R +  +E+V  G   
Sbjct: 198 EHPDSTVDDLMKHIKGPDFPTGGTI-QGVDGLKKAYETGKGKIVLRGKAEIEDVRGGKQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           IV+TEIPY+V K+ L++++ EL I K++  + ++RD++    +RIV+  K +  D   ++
Sbjct: 257 IVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIVVELK-KEADSKGIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  +D++  +  NM V    + P+++ L  +L+ ++ H++EV+ RR+ F +     R
Sbjct: 316 HYLYKNTDLQVSYNFNM-VAIFNKTPKLLGLKHMLEAYINHQKEVVTRRTKFDLNKAKER 374

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             I++GL+ A   +DE+I  IR ++DK   K  +   +  TE Q +AI+ L+L  L   +
Sbjct: 375 AHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQAEAIVTLQLYRLTNTD 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ E   L    EK++++L+S K   N+I  E++E+K+ ++++      R T  E  
Sbjct: 435 VTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYAEA------RRTVIEQE 488

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIALHAHTT 560
             D     + +I  E + V ++  G+++  SL+S++  +      KE D L  +L  +TT
Sbjct: 489 IEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGMKETDRLLYSLEINTT 548

Query: 561 DRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
           D +LL +  G    LP   L  +  +  G+ +  L+ ++++ DI+TA
Sbjct: 549 DTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVANLVAMDNDDDILTA 595


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 217/696 (31%), Positives = 397/696 (57%), Gaps = 26/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGII + +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGII-QGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  E +RI + 
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 302 LK-KEADSQLVLNYLFKNTDLQVNYNFNMVAID-NMTPVQTGVLQMLRSYVKHREDVIIK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
             RR     EV   +    +  +I  E   V ++  G+I+     S   SAL     ++ 
Sbjct: 478 --RRSELQDEVQTIEIEASE--LIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R    GE + Q L + + ++ ++  
Sbjct: 534 DELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRWKDIGEHLSQSLSNFSSDEKVIYV 593

Query: 606 FVYDSTC--KLLVVSSKGNAFIVE-ESEIIANTRKGKT--FLKVS-SEEKMKLVVKVTGD 659
            + D+     L+VV+  G    +E ES     T + K+  + K+  +++++ L+  V   
Sbjct: 594 QIVDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEIVLISPVQFT 653

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
            + ++ EN   L F++D +P + +R  GV+  + K+
Sbjct: 654 DLMIISENGYALRFNLDDVPVLGARAAGVKAMNLKN 689


>gi|332360837|gb|EGJ38643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK49]
          Length = 842

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 29  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 89  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 149 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR++
Sbjct: 209 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSK 267

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 268 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 327

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 328 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 386

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 387 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 446

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 447 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 503

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 504 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 560

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 561 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 620

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 621 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 680

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 681 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 709


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S +     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTVEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKMGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/606 (32%), Positives = 349/606 (57%), Gaps = 16/606 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++ ++  I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTK-GIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VVELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKYDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   + S A     ++A++  E + V+IS  G+++  SL+S+ S D +     
Sbjct: 481 -----RRTQISQES-AKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDTDNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS 610
            F +++
Sbjct: 595 VFAFNN 600


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S +     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTIEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V  N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVK 683


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/630 (33%), Positives = 364/630 (57%), Gaps = 27/630 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I NSN   E+ + + +L   + ER+  YA   I+ERA+PD RDG KPV RRI++AM+E+ 
Sbjct: 5   IDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAMNELN 64

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PLI  QGN G+IDGD+
Sbjct: 65  LTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSIDGDN 124

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++++L+L  ++++ V F   +++ + EP V PS FPN+L NG++GIA 
Sbjct: 125 AAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGSTGIAA 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + LI  P   I+ +LE + GPDFPTGG  V+ R  I +++  
Sbjct: 185 GYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGG-TVQGRNGIKDAFTT 243

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V ++W  E+       I++ EIPY+V K  L++KI ++I A     + ++RDE+
Sbjct: 244 GKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVRDET 298

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             + +RI +   +++ + D + + +F  + +   +  N NV  +   P+ + +  ++  +
Sbjct: 299 DRNGLRIAIDLSDKA-NLDTVRKFLFKSTPLSISYNYN-NVAIVDLQPKQLGIIELIHAY 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           +AH +EV   R+ F +   ++R+EI+ GL+ A   +D++I++IR   N       ++S+F
Sbjct: 357 IAHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISKF 416

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             ++ Q  AI+++RL  L   +  ++++E + L     K+ ++LNS +   N+I   +RE
Sbjct: 417 VFSQPQAAAIVDMRLYRLTSTDVVKLQNEKEELDVNIAKLKAILNSEEVMDNEIINRLRE 476

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
           VK+ F         R +  E S  +    Q+ ++ +    + IS  G++++++S  +   
Sbjct: 477 VKKQFPTP------RRSIVEDSIENLDVEQKEVLVEHEYNLWISKDGYLKAIESKLISKN 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
           D +    K  D    A        ++L++  G  Y++P   L     R  G  +  +  +
Sbjct: 531 DPAVFGRKPNDMWIAAGEVSNLQHLILVTNKGTYYSIPLYKLPMSKWRDMGVHVNTIATM 590

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGN 622
           + ++ IV+AFV     ++  ++L+ S  GN
Sbjct: 591 DPSEHIVSAFVVKDFAEALQQILITSKNGN 620


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 243/779 (31%), Positives = 411/779 (52%), Gaps = 49/779 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDDNGDLYDKIHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALI----DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +A   L+     + E S+E  ++++ GPDFPT G+IV     I +
Sbjct: 181 GMATNIPPHNLKELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIV-GDSGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEQG-SRQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + +D 
Sbjct: 299 EDESSDRVGMRIVITLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRIDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+ ++AH+ EV+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S   +   Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   + 
Sbjct: 417 LMSLLDVDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILAKPERQRAIVH 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E++E+ + +        RRT   ++  A      + +I +E + V I++ G+ +  K  
Sbjct: 477 DELQEIVDKYGDE-----RRT---QIVAATGDVTDEDLIARENVVVTITSTGYAKRTKVD 528

Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586
           S          +     K+ D +K      T D IL  +  G+ Y L A  L   S    
Sbjct: 529 SYKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPEASRTAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDGG 696
            ++  E   L+   +    D + +  E  + + F+ D  Q+  M R   GV+   ++D  
Sbjct: 646 AINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRDD- 704

Query: 697 ISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              ++   + +  G   + ++G    R+  +     G RGG+G +  K  P+ GK + +
Sbjct: 705 -DQLLSLSVVQEGGYLLVATSGGYGKRTAIEEYAPQG-RGGLGVMTFKYTPKRGKLIGA 761


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/629 (34%), Positives = 347/629 (55%), Gaps = 34/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRII+AM + G     ++ K
Sbjct: 15  DRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYAMYDNGYRPERSYVK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 75  SARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTEC 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 135 RLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGSGGIAVGMATNIPPH 194

Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +A    +D+ +     ++E ++E + GPDFPT G+IV  +  I ++Y  GRG  
Sbjct: 195 NLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDK-GIKDAYTTGRGSI 253

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           ++R    +EE  RG   IV+TE+PYQV    L+  IAE +   +I  +  I DES++ V 
Sbjct: 254 KMRGVTSIEEE-RGRTIIVITELPYQVNPDNLVSSIAEQVRDGKIAGISKIDDESSDRVG 312

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+
Sbjct: 313 MRIVVTLK-RDAVPRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQLLRLYVDHQ 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            +V+ RR+  R+   ++R  IL+GL+ A   +DE+IA+IR    P   +  ++    + E
Sbjct: 371 IDVIVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIARTGLMDLLDIDE 430

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL +RLR L  LE  +I  EL  L      +  +L   ++Q   +  E+ E+   
Sbjct: 431 LQADAILRMRLRQLAALERQKIIDELKELELTIADLKDILARPERQRQIVRDELEEIVNN 490

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT   ++  A     ++ +I +E +   I++ G+         R+ K   
Sbjct: 491 YGDD-----RRT---QIIAATGDVTEEDLIARENVVATITSTGYAKRTKVDLYRNQKRGG 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++
Sbjct: 543 KGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 602

Query: 596 LN---HNQDIVTAFVYDSTCKLLVVSSKG 621
                H   ++    Y+    L++ + +G
Sbjct: 603 FQPGEHIAQVIQLQTYEDAPYLVLATKQG 631


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   + KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 344/606 (56%), Gaps = 16/606 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++ + + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGT-QGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL   K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLADRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFK 546
                RRT   E S   K   ++A++  E + V+IS  G+++  SL+S+ S D +     
Sbjct: 481 -----RRTEISEESAKVKID-EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS 610
            FV+DS
Sbjct: 595 VFVFDS 600


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 219/662 (33%), Positives = 376/662 (56%), Gaps = 28/662 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F  AF+
Sbjct: 5   QPKIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD AAA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L L+++P+ ++E L++++ GPDFPTGGII +    I ++Y  GRG   VR
Sbjct: 185 HNLSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGGII-QGLAGIKQAYETGRGRIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +  +      I V+EIPY+V K++L++KI E+ I K+I  + ++RDES      V+
Sbjct: 244 SRTKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ + ++  +   +D++  +  NM  +   R P+ + L  IL  +L H+R+V+ 
Sbjct: 304 IELKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQR-PEHVGLKTILTAYLEHQRDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  I++GL+ A   +D++I  IR ++DK   K  +VS+F  +E Q +A
Sbjct: 363 RRTQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQFDFSEIQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ ++L  L   +  Q++ E   L         +L   K+    +  E++ V++ +  S 
Sbjct: 423 IVTMQLYRLTNTDVTQLEKESAELAKAIATYQLILAEPKELDKVLRRELKAVQKAYPTS- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548
                R T  +    +     + +I +E + V+IS+ G+I+  SL+S+S      +  + 
Sbjct: 482 -----RLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIKRTSLRSYSASEPDDNGLKD 536

Query: 549 DSLKIALHAHTT-DRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
           +   I L  ++T D +++ +  G     P   +     +  GE I   I L  N+ I   
Sbjct: 537 EDYPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADAKWKDTGEHISQTIGLAENERITWV 596

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
           + ++   +T K LV +S G  +I + +   A+   G+T+   +S+      +K+  D   
Sbjct: 597 YSFENLKATGKFLVATSDG--YIKQTA--FADYTPGRTYKTRASQ-----FIKMKSDDAT 647

Query: 663 VV 664
           VV
Sbjct: 648 VV 649


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   + KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 355/640 (55%), Gaps = 34/640 (5%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D  S  + ++   V+ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM +
Sbjct: 8   DGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRRILYAMFD 67

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQGNFG+   
Sbjct: 68  NGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGD 127

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL NG+ GI
Sbjct: 128 DGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGGI 187

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +A    +DNP+     +++ ++E I GPDFPT   IV  +  I
Sbjct: 188 AVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQIVGDK-GI 246

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG  R+R    +E+ G     IV+TE+PYQV   R+I  IA+ +   R+  + 
Sbjct: 247 KEAYTTGRGSIRMRGVTSIEQEGT-RQSIVITELPYQVNPDRMIANIADQVKDGRLQGIA 305

Query: 300 DIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            I DES     +RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ + +
Sbjct: 306 SIDDESDLKWGMRIVVKLK-RDAVPRVVLNNLYKHSQLQTSFGANMLAIVDG-VPRTLRI 363

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D ++  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 364 DQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATVDTAR 423

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L +  +Q   
Sbjct: 424 TGLMGLLDIDEIQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILANPDRQRAI 483

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ EV E +        RRT   ++  A+    ++ +I +E + V I++ G+ +  K
Sbjct: 484 VKEELGEVVEKYGDD-----RRT---QIVAAEGDVTEEDLIARENVVVTITSTGYAKRTK 535

Query: 535 SHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGR 584
             +          +     K+ D ++      T D IL  +  G+ Y L A  L   +  
Sbjct: 536 VDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWILFFTNKGRVYRLKAYELPEATRA 595

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
             G+ +  L++    + I        Y  +  L++ +S+G
Sbjct: 596 ARGQHVANLLEFQPEERIAEVLQIQSYQDSPYLVLATSEG 635



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 12/198 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           LQ    +  P  V+ ++ G ++  +      + S  L A++ +EGDSL  A      D +
Sbjct: 617 LQIQSYQDSPYLVLATSEGKVKKSRLEDYESARSAGLIAINLREGDSLIGARLCSADDDL 676

Query: 564 LLLSTDGKAYTLPAG-NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           LL+S  G+A    A  + L   G   A    +    +  +++  V +    LLV ++ G 
Sbjct: 677 LLVSERGQAIRFTASDDALRPMGRATAGVQGMRFKGDDKLLSMVVVEEEHNLLVATTGGF 736

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
               + SE     R G   L +  + K    M  +V    D +  V     ++  ++++I
Sbjct: 737 GKKTKLSEYTPQNRGGMGVLTLKYDPKRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEI 796

Query: 679 PEMSRG-KGVRLQSYKDG 695
              SR  KGVRL +  DG
Sbjct: 797 RATSRATKGVRLVNLADG 814


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 209/614 (34%), Positives = 355/614 (57%), Gaps = 21/614 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K+A+ V
Sbjct: 8   LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +
Sbjct: 68  GNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYTEARLSSI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +++  V+F   +++  +EPVV P+ FPNLL NG++GI+ G AT IP H++ E+
Sbjct: 128 ALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +  ID P+ ++++L+  I GPDFPTGGII + ++ I ++Y  G+G   +R +  +E
Sbjct: 188 IDAVIMRIDKPKCTVDELMTVIQGPDFPTGGII-QGKDGIKKAYETGKGKIIIRGKAAIE 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           +   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+    +RIV+  K +
Sbjct: 247 QGKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRIVIELK-K 305

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + ++  ++  +D++  +  NM V    R P+++ L  +L  ++ HR+EV+  RS +
Sbjct: 306 DADAEGILNYLYKNTDLQVPYSFNM-VAIHERRPKLLSLPELLDAYIEHRKEVVTNRSQY 364

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLR 435
            ++    R  I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+
Sbjct: 365 ELKKAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAKYEFTEAQAEAIVSLQ 424

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L   +   ++ E + L    +++ ++LNS K+    I  E++ +K+ ++       R
Sbjct: 425 LYRLTNTDITALQQEAEQLEKTIQELTTILNSEKKLLAVIKRELKAMKKQYADE-----R 479

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLK 552
           RT   +     K  L + MI  E + V ++  G+++     S + S       KE D L 
Sbjct: 480 RTVIEDEIEELKINL-EVMIPSEDVIVTVTKEGYVKRTSYRSYNASNGQDFGMKESDRLL 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607
             +  +TTD +LL +  G     P   L  +  +  G+ I  LI L+ + D++ A     
Sbjct: 539 SQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRWKDVGQHISNLIPLDRDDDLIAAVPVKR 598

Query: 608 YDSTCKLLVVSSKG 621
           +D    L+ V+ +G
Sbjct: 599 FDEPLSLVFVTKQG 612


>gi|332361155|gb|EGJ38959.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1056]
          Length = 816

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDVVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDNAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 347/602 (57%), Gaps = 16/602 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G  +   F+K
Sbjct: 6   QKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+  VDF   +++   EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID+P+ ++EK++ ++ GPDFPTGGI+ +  + I ++Y  GRG   VRA
Sbjct: 186 NLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGIL-QGLDGIKKAYETGRGRVVVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IV++EIPY+V K+++++KI EL + K++  + ++RDES      V+ 
Sbjct: 245 KTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +S  +  QV  L+ IL  +L H+ EV+ R
Sbjct: 305 ELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLE-ILHAYLKHQEEVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R+ I+ GL+ A   +D++I+ IR   N+   K  +V+++  TE Q +AI
Sbjct: 364 RTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLVAQYDFTEAQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E   L        ++L + K+    I  E++ V + +     
Sbjct: 424 VSLQLYRLTNTDVTALEAEAAELKTAVAGYQAILGNPKELARVIKAELKSVVKAYRND-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKEG 548
             R+     E+   +  T     +  E + V +S+ G+++  SL+S+     A    KEG
Sbjct: 482 --RKTEIEAEIETLEIDT--SVTVIDETVMVAVSHDGYLKRSSLRSYQASEGADGGLKEG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D   +     T D+++L +  G     P   +  L  +  GE I   I L  ++ I+ AF
Sbjct: 538 DFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIADLKWKEMGEHISQSIGLAADEAIIAAF 597

Query: 607 VY 608
            +
Sbjct: 598 SF 599


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 333/578 (57%), Gaps = 20/578 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E + GPDFPTGGII  + E I ++Y  G+G   VR+R
Sbjct: 186 LSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAE-IKKAYETGKGRVVVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 245 TEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 364 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFA----- 478

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           G R +     S+A   D A+L    I +E   V ++  G+I+     S   S+L     +
Sbjct: 479 GPRLSELQAESQAIEIDSASL----ILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           + D L     A TTD +LL +  G     P   L   R
Sbjct: 535 DDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLR 572


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P ++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPCLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 198/478 (41%), Positives = 290/478 (60%), Gaps = 12/478 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+V
Sbjct: 16  TALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPYRKCARVV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+  +
Sbjct: 76  GDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLAPI 135

Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           A E IL  + E  VDF   ++    EPVV P++ P LL NG SGIAVGMAT+IP HN+ E
Sbjct: 136 AHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMATNIPPHNLGE 195

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +  +ALID+P++   +L E I GPDFPTGG I+++ E I+E+YR  +G   +R    +
Sbjct: 196 IVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDT-EGIIEAYRTSKGIIPIRGVTHL 254

Query: 259 EEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           E +       +    IVVTE+PYQV KS  IEK+AEL+   R+  + DIRDES      V
Sbjct: 255 ETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIRDESDRLGMRV 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  D   ++++++  + ++T F   +  L   + P  + L  +L+E+L  R + L
Sbjct: 315 VIELKRETDSQKILDNLYRQTALQTNFGTILLALVENK-PCQLSLRQLLEEFLKFREQTL 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            R+ S  +     R+ +L GLLIA  N+D +I I+RN       K      F+L+E Q D
Sbjct: 374 IRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSEAFNLSEEQSD 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +IL++ +R L  LE+ ++ +E   L     ++ +LLN   +    +  E+R +K  F+
Sbjct: 434 SILSMPMRRLTGLEQQKLDTEYQELEQRINQLQTLLNDRNELMKSLKKELRSLKRKFA 491


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 213/689 (30%), Positives = 384/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A T   +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 329/549 (59%), Gaps = 22/549 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++ MS MGL    A  K
Sbjct: 16  EKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHVK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG+++ D  AA RYTEA
Sbjct: 76  CARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLN-DGPAASRYTEA 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG+SGIAVGMATSIP H
Sbjct: 135 RLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+  E Y  G+G F++RA
Sbjct: 195 NLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAFKEIYATGKGSFKIRA 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           +  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + D+ D S     +++V
Sbjct: 254 KISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKLV 313

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K  +  P+ +M++++  + +E  F +N   L  G+ P+ + +  +LK ++ HR  V+
Sbjct: 314 IGIKP-NFSPNEVMDNLYRHTPLEESFSVNSVALIDGK-PKTLGMLDMLKVFIDHRVCVI 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS F +    +R+ ++ GLL+A ++ID+ I+IIRN +  K     ++   ++T +Q +
Sbjct: 372 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAE 431

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSK 488
            IL++RL  L KL   +++SE + L    + ++ +L+      N+I A  I E+K++  +
Sbjct: 432 YILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILS----DPNKIDAILIDELKKVAQR 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              L   R T  E S   K           P  VV++  G+I +++ ++  +S L   E 
Sbjct: 488 ---LPSPRRTILESSVKSKKQKTDY-----PRQVVLTTNGFIFTIEVNNDLISELSQPET 539

Query: 549 DSLKIALHA 557
             +    H+
Sbjct: 540 FDMTFNTHS 548


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 227/707 (32%), Positives = 390/707 (55%), Gaps = 46/707 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 6   IEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RYTEAR+
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+
Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + L++NP+ S+EKL+E+I GPDFPT G I++  + I ++Y+ GRG   VRAR 
Sbjct: 186 GEVLDALVYLLNNPDASLEKLMEFIPGPDFPT-GGIIQGIDGIRKAYQTGRGRIVVRART 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +    
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +   ++  +   +D++  +  NM  +   R P  + L  IL  +L+ +++++ RR+
Sbjct: 305 KRGANAQGILNYLLKNTDLQINYNFNMVAIDEQR-PMRVGLKRILISYLSFQKQIIRRRT 363

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F +     R+ I++GL+ A   +D++I  IR   N    K  ++++++ +  Q +AI+ 
Sbjct: 364 QFNLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLINQYAFSAEQAEAIVT 423

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  ++K E   L  + E+   +L + ++  N +  E+  +K+ F       
Sbjct: 424 LQLYRLTNTDVTELKDEQKKLNQQIEEFQLILTNDQELANVLRREMLAIKKEFGNP---- 479

Query: 494 RRRT---TFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHF 545
            RRT   +  E  R D     +  + KE + +++S+ G+I     RS K+  +D + L  
Sbjct: 480 -RRTKIESHVEKLRVDT----KVTVAKEDVILLVSHAGYIKRSSVRSFKASPIDENGL-- 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P   +   R    GE I   I L  N+ I+
Sbjct: 533 REDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKDTGEHISQTIGLAENEHII 592

Query: 604 TAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVT 657
            A V+D   +   +++ +S G       ++    +R   +  T +K+ S+E   + V   
Sbjct: 593 KAMVFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSRYKSRTTTGIKLKSDEARLVSV--- 649

Query: 658 GDHVAVVGENRKLLI---------FSIDQIPEMS-RGKGVRLQSYKD 694
            D+     ENR LL+         F +  +P    R  GVR  + KD
Sbjct: 650 -DYYEPTNENRSLLVISHEGYAVRFDVADVPVTGLRTGGVRAINLKD 695


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 206/683 (30%), Positives = 378/683 (55%), Gaps = 24/683 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  H
Sbjct: 3   ERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +
Sbjct: 63  PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + +I
Sbjct: 123 DKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVYMI 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R  +E++  G   
Sbjct: 183 DHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSRTEIEQLKGGKKQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +     +  D   ++ 
Sbjct: 242 IIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTILN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  RS F  +  ++R+
Sbjct: 302 YLLKYTDLQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEKRL 360

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+     +DE+I++IR   N+   K  +   +  +E Q +AI+ L+L  L   + 
Sbjct: 361 HIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIVTLQLYRLTNTDI 420

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +++E  NL  +   + +++   +  +N +  E+R++K+ F       RR     E   
Sbjct: 421 VALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGND----RRSELQAETKT 476

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHTTD 561
            +  T   ++I +E   V I+  G+++     S + S +     ++ D L +   A TT 
Sbjct: 477 IEIDT--ASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDDDLILVQQAKTTQ 534

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAFVYDS--TCKLLV 616
            +L+ +        P   L  +  +  GE + Q + + + +++++ A + D   T   L 
Sbjct: 535 HLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFETGTYLA 594

Query: 617 VSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLI 672
            +  G     E  E     T K K+      +++  ++V VT    D + ++ +    L 
Sbjct: 595 TTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYALR 654

Query: 673 FSIDQIPEM-SRGKGVRLQSYKD 694
           F+ D++P + ++  GV+  + KD
Sbjct: 655 FNADEVPVVGAKAVGVKAINLKD 677


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/524 (39%), Positives = 312/524 (59%), Gaps = 15/524 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           VEE +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL      
Sbjct: 20  VEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPEKGH 79

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS R+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D +  AA RYT
Sbjct: 80  VKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLD-NGPAAPRYT 138

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A L+   +DED VD    Y+ +  +P V P+++PNLL NG SGIAVGMAT++ 
Sbjct: 139 EARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASGIAVGMATNMA 198

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   AA  LID+PE  +E+L+ ++ GPD PTGG IV   + I ++YR GRG F++
Sbjct: 199 PHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGGRIV-GLDGIRDAYRTGRGSFKM 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +E V      IVVTE+PYQV   RL EK+ + + +K++  + D +D  +    +R
Sbjct: 258 RATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQDLTDRHHGLR 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL  K+   DPD ++  ++  + +E  F +N   L  G+ P+ + L  +L+ ++ HR E
Sbjct: 318 LVLTVKS-GFDPDAVLAQLYKFTPLEESFGINNVALVDGQ-PRTLGLKQMLEVFVGHRLE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+  R+     R+ +++GLL+A ++IDE+I I+R  D     +  ++  F LT+ Q
Sbjct: 376 VVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQVFDLTQVQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL LRLR L +  +  +++E D+L  E E+++ +L S       ++ E+  V     
Sbjct: 436 AEYILELRLRRLTRFSQIDLEAERDDLRREIERLEEILGSETVLRALVSEELAAVAAEHG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI 530
            S     RRT   E +         ++ +  EP  V+++  G I
Sbjct: 496 DS-----RRTVLLEAAEKPAVVAGASLEVADEPCHVLLTGTGLI 534


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR++++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKDIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
             R +   + + A +      ++E+E   V ++  G+I+     S   S +     ++ D
Sbjct: 478 --RLSELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTIEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDH 660
           + DS         +  G    VE  E     T K K+  F K+ +E+   + +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           V +V +N   L F+I+++P + ++  GV+
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVK 683


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter marinus]
          Length = 470

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 201/483 (41%), Positives = 312/483 (64%), Gaps = 22/483 (4%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           +I++AM ++ +   + +KKSARIVG+VIGK HPHGD SVYD+LVRLAQ F  R PL+ GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG++DGD+AAA RYTEARMT+++E IL+ +D+D V+F   Y++   EP V P++ P L
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG+ GIAVGMAT IP HN++E+ EA L  IDN E + E L+++I GPDFPTGG I   
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIF-G 179

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I+++Y+ GRG  ++RA+  +E  G+    IV+ E+PYQV KSRLIE+IA L   K +
Sbjct: 180 RRGIIDAYKTGRGRVKIRAKHHIETKGK-KEVIVLDELPYQVNKSRLIEQIAILAKEKNV 238

Query: 296 PLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + ++RDES  E +R+V+  K  ++  ++++ +++  + MET F + +  +   + P+V
Sbjct: 239 EGISEVRDESDREGIRVVIELKKDAMS-EIVLNNLYKSTPMETTFGIILLAVH-NKEPKV 296

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NED 411
             L  +L+ +L+HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ 
Sbjct: 297 FNLPELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDA 356

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             K  +  RF L+  Q  AIL++RL  L  L+  +++++  ++L    +++++L S ++ 
Sbjct: 357 DAKEKLQERFELSLIQSQAILDMRLGRLTGLQRDKLEADYQDILRLIHELEAILKSEEKL 416

Query: 472 WNQIACEIREVKEIFSKSTDLGRRR---TTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
              I  EI+E+KE +S      RRR    ++ E+   D       +I  EP+ V I+  G
Sbjct: 417 NEIIKEEIQEIKEKYSDE----RRREIEDSYDEIDIED-------LIPNEPMAVNITRNG 465

Query: 529 WIR 531
           +++
Sbjct: 466 YVK 468


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 177/371 (47%), Positives = 249/371 (67%), Gaps = 4/371 (1%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM+E G     AF+KSAR V
Sbjct: 26  ISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMNESGNTHDKAFRKSARAV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+ +GK HPHGD S+YD+L R+AQ F     LI GQGNFG++DGDS AA RYTEAR+ +V
Sbjct: 86  GDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEGQGNFGSMDGDSPAAMRYTEARLAKV 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 ASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI NP+++ E L++Y+  PDFPTGG+I+  R    ++Y  GRG   +RAR  VE
Sbjct: 206 IDATIALIKNPDLTSEDLMQYVPAPDFPTGGMIL-GRSGARKAYLEGRGSILMRARSHVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           E+ +  + I+V ++PYQV KS +I+KIAE +  KRI  +  I+DES  + VR+V+  K R
Sbjct: 265 EIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKRIEGIAHIQDESDRNGVRVVIELK-R 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  S M+  F  NM  L+ GR P+ + L   L+ ++  R EV+ RR++F
Sbjct: 324 DATADVVLNQLYRFSPMQISFGANMLALNGGR-PETLTLYRFLQCFIDFREEVVARRTAF 382

Query: 379 RMQAIDRRVEI 389
            ++    R  I
Sbjct: 383 ELRKARERAAI 393


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/495 (39%), Positives = 298/495 (60%), Gaps = 14/495 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI+  MS MGL     
Sbjct: 21  LEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRG 80

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA RY
Sbjct: 81  HVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT++
Sbjct: 140 TEARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNM 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN++E+   A  L+ +PE  +E ++ +I GPD P+GG IV   + + ++Y  GRG FR
Sbjct: 200 APHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTFR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDV 309
           +RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D  +    +
Sbjct: 259 MRAAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGL 318

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+ +  K+   +P  ++ +++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR 
Sbjct: 319 RLQIELKS-GFNPQAVLAALYRHTPLEETFGINNVALVDGQ-PQTLGLLPLLRVYVDHRL 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D        ++  F LT+ 
Sbjct: 377 DVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQV 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +  
Sbjct: 437 QADHILELRLRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEH 496

Query: 487 SKSTDLGRRRTTFCE 501
                   RRT   E
Sbjct: 497 GDD-----RRTVLLE 506


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 235/710 (33%), Positives = 387/710 (54%), Gaps = 41/710 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 136 SRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PVLLTLRKMLQVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            + + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +     LTE
Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLTE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLREK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
                    RRT   ++       L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 HCLP-----RRTEILDLG----GGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              K G      +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I   ++   +D    LL+++  G  FI   S    +  +    + +  EE   
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGG--FIKRTSLSAFSKIRSNGLIAIGLEEGDA 662

Query: 652 LV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDG 695
           L    + V GD V +       + F +  +++  + R  +GVR  + + G
Sbjct: 663 LTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGG 712


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 334/572 (58%), Gaps = 26/572 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 24  LRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGE 83

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-A 140
           V+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R+  +  
Sbjct: 84  VLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTT 143

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ 
Sbjct: 144 DSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHNLNELI 203

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   +R    +E 
Sbjct: 204 DGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVTMRGVANIET 262

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++   
Sbjct: 263 IEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMRIVVEL 322

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R E + RR+
Sbjct: 323 RRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGE-PILLTLRKMLEVFLDFRVETIERRT 381

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L++ Q DAIL 
Sbjct: 382 RYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQADAILQ 441

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E +       
Sbjct: 442 MQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYPTP---- 497

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG--- 548
            RRT   ++           +I  E   V+++  G+++ +     + ++     K G   
Sbjct: 498 -RRTEILDLG---GGLSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRS 553

Query: 549 ---DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              D++K+ +  +  D ++L S  G +Y LPA
Sbjct: 554 QGEDAVKLFISCNDHDTLVLFSDRGVSYALPA 585


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 253/744 (34%), Positives = 400/744 (53%), Gaps = 77/744 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L + YL YA S I  RA+PD+RDG KP  RRI+ AM+++GL   ++  K A I+GE + +
Sbjct: 32  LRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCAGIIGETMKR 91

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YDSLVR+AQ +  RY L+ GQGNFG+I G   AA+RYTEAR+T  A  +L+
Sbjct: 92  YHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARLTPAAGELLE 151

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF D Y+ +  EP+V P KFPNLL NG+ GIAVGMAT IP HN++E+C+A + 
Sbjct: 152 DLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNLREVCKALVL 211

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV-EEVGRG 264
           L+DNP  ++  L++ I GPDFPTGGII+  R+ ++E+Y  G G   +RAR  V EEV   
Sbjct: 212 LLDNPGATLADLIQIIPGPDFPTGGIIM-GRQGLLEAYARGAGKITLRARAQVMEEVKGR 270

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA----EDVRIVLFPKNRSL 320
           S  I+++E+P+QV ++ ++E+IA L+  +RIP +  +RDES+    E VR+++  K R  
Sbjct: 271 SPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLIVEIK-RGK 329

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP L++  ++  + ++    + M  L  GR P+ + L  +L+++L HR  V+ RR+ F +
Sbjct: 330 DPHLVLNQLYQYTKLQKTVSIIMLALVDGR-PRELTLKEMLQKFLDHRVHVIRRRTEFLL 388

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------------PKPVM---------- 417
           +   +R  +L+G LIA  +I+++I I R                 P  +M          
Sbjct: 389 REAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRAIGEGAFA 448

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                   V+ + +TE Q +A++NLRL  L  LE  +I  E   L       ++LL+   
Sbjct: 449 ALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGYETLLSDDA 508

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I   IRE  ++   +   G  R T  EVS        + +I  EP  V IS+ G+
Sbjct: 509 ----NIHAVIRE--DLERMAAKYGDDRKT--EVSDDGGDVDMEDLIVDEPNVVTISHEGF 560

Query: 530 IR--SLKSHSVD-----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-L 581
           ++  +L  + V            ++ D ++    A T   +L  +  G+ Y L    +  
Sbjct: 561 VKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKVYRIPT 620

Query: 582 SGR-GHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NT 635
           +GR   G AI  ++ L   +    IV    +     LL+ + +G    V++++++A  N 
Sbjct: 621 AGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGT---VKKTDLMAYSNV 677

Query: 636 RKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQ 690
           R+G   + ++ +E  +L+ V +T   D V +  +    + F    I  M R  +GVR ++
Sbjct: 678 RQG-GIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGIK 736

Query: 691 SYKDGGI-------SDVICFKICE 707
             KD  +        D +   +CE
Sbjct: 737 LGKDDALVGMVVADPDGLLLTVCE 760


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/499 (38%), Positives = 303/499 (60%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E  + +SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAKERFQPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  +D+  VDF   ++    EP V P++ P L+ NG SGIAVGMAT+
Sbjct: 121 TETRLAPIANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI    +ALI  PE+S +KL+E I GPDFPTGG I+ S   I E+Y  G+G  
Sbjct: 181 IPPHNINEIINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLSN-GIKETYLKGKGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G+G      IV+TE+PYQV K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGITHIEEINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R +D +++ ++++  ++++  F   +  L  G+ P+ + L  +L  +L
Sbjct: 300 DRDGMRIVIELRRDIDHEIVKDTLYQKTNLQNNFSATLLALVNGQ-PKQLSLKRLLIIFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            +R   + +R+  +++    R+EIL+GL+ A  N+ ++I +I N       K  ++S   
Sbjct: 359 EYRELTIRKRTKNKLKQTLARLEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSELK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + IL++ LR L  LE   + +E ++L   ++ +  +L +  Q  +++  E++ +
Sbjct: 419 LNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKNLREILENRSQLLSEMVNELKLL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ F       +R+T   E
Sbjct: 479 KKKFG-----SQRKTKLVE 492


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 236/721 (32%), Positives = 387/721 (53%), Gaps = 42/721 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           VD +     LV  + V  V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 150 VDGVGPPGPLVGGDQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAM 209

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             + L+     +K AR+VGEV+GK HPHGD +VYD+LVR+AQ FV   PLI G GNFG+I
Sbjct: 210 YGLNLNPEGTHRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSI 269

Query: 122 DGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D D AAA RYTE +++ VA + +L  ++ D VD    ++  + EPVV PS+ P LL NG 
Sbjct: 270 DNDPAAAMRYTECKLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGA 329

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+  A +ALI NP I  ++L   +  PDFPTGG I+       
Sbjct: 330 TGIAVGMATNIPPHNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIM-GLAGAR 388

Query: 241 ESYRLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + Y    GG  +RA   +E +   GR     +VVTE+PYQV KS L++++AE++  K++ 
Sbjct: 389 KLYTTSNGGVTLRATTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLE 448

Query: 297 LLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQV 354
            + D+RDES  D VR+V+  K R  +P ++  ++F  + ++T F  NM  L S G  P  
Sbjct: 449 GISDLRDESDRDGVRVVVELK-RDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHR 507

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP 413
             L   ++ ++  R   + RR++F +  +  R  I++G+L A   ID +I ++R + D P
Sbjct: 508 FSLRAAIQSFVDFRFTTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTP 567

Query: 414 KP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                +M   + L++ Q DAIL LRL  L  +EE ++K+E ++L A  E+++ ++N   +
Sbjct: 568 MARDGLMAEPYGLSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLEGVMNEDSK 627

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGW 529
             + I  E+ E K   +       RRT      + D+  L ++ ++  +   VV++  G+
Sbjct: 628 VMDIIVEELTEAKNKHAVP-----RRTMI----KPDEGELHEEDLLANDNSVVVVTAAGY 678

Query: 530 IR--SLKSHSVDLSALHFKEGDSLK----IALHAHTT---DRILLLSTDGKAYTLPAGNL 580
           I+   L+  +        K G  +     +  H  T    D IL +S  G AY + A  +
Sbjct: 679 IKRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQV 738

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANT 635
             G     G  +  ++ +  ++ I +    D   +   L++++ KG       +   + +
Sbjct: 739 PVGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTS 798

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR----KLLIFSIDQIPEMSRGKGVRLQS 691
            +G   + +  ++ ++ V +   ++  V+G  +    + L    D  P     +GV+ + 
Sbjct: 799 SRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRGVKEEG 858

Query: 692 Y 692
           +
Sbjct: 859 H 859


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 382/685 (55%), Gaps = 24/685 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +ID+P   ++KL+E++ GPDFPTG  IV+ R+ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGA-IVQGRDEIKKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  RS F 
Sbjct: 300 ANTELILNYLFKYTDLQVNYNFNMVAID-NFTPRLVGIVPILTSYIAHRKEIILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
               ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L
Sbjct: 359 KAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F        R 
Sbjct: 419 YRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKFGNP-----RL 473

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKI 553
           +   + + A +      ++E+E   V ++  G+I+     S   S L     ++ D L  
Sbjct: 474 SELQDTANAIEIDTASLIVEEETY-VSVTRSGYIKRTSPRSFSASTLEEMGKRDDDRLIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFVYDS 610
              A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   + DS
Sbjct: 533 VSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDS 592

Query: 611 --TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VTGDHVAVV 664
                    +  G    VE  E     T K K+  F K+ +E+   + +  +  D V +V
Sbjct: 593 FEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLV 652

Query: 665 GENRKLLIFSIDQIPEM-SRGKGVR 688
            +N   L F+I+++P + ++  GV+
Sbjct: 653 TKNGYALRFNIEEVPVIGAKAAGVK 677


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 381/682 (55%), Gaps = 62/682 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+  M+E+G      +K
Sbjct: 6   QDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VG+V+GK HPHGD SVY +LVR+AQ ++ RYPL+ GQGNFG+IDGD+ AA RYTE
Sbjct: 66  KSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +AE +L+ +D++ VDF   +++   EP V P++ P LL NG+SGIAVGMAT++P 
Sbjct: 126 ARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATNMPP 185

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E     +A ID+  EI I+ L++YI  PDFPTG  I    + I E + +G+G  R+
Sbjct: 186 HNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIY-GFQGIREVFEVGKG--RI 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
             R  VE E+      IV+ EIPY V K  LIE IA L+  K++  +  I DES  E +R
Sbjct: 243 LLRGKVEIEIHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGMR 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K +  +  +L+  ++ L+ +E+ F +N   L  GR P+ + L  ++  ++ HR E
Sbjct: 303 IVVDVK-KDFNSGVLLNKLYKLTALESSFNVNNIALVNGR-PRTLNLKELICYFVEHRVE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ RR+ + +  ++RRV I+ GL+IA  +IDEI+AII +   P      +  RF LTE Q
Sbjct: 361 VVVRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRLSGRFDLTEIQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNL----LAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             AI+ +RLR L  LE+ ++++E   L    L  KE    +L++       I  E+ EV+
Sbjct: 421 SRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWKE----ILSNRNILMKIIKDELIEVR 476

Query: 484 EIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533
           + F   + TD+        + S +D       MI      + IS+ G+I        R+ 
Sbjct: 477 DRFGDVRKTDI----VYSTDDSNSDDFYADDEMI------ITISHLGYIKRTPLVDFRAQ 526

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588
               V   +   ++ D ++    A+    +L  +  G     K Y +PAG   S    G 
Sbjct: 527 NRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPAGAKTS---KGR 583

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645
           AIQ L++++ N D V+AF+     ++  +S K     VE   ++  T++G   KT L   
Sbjct: 584 AIQNLLNIDTN-DKVSAFI-----RVKYLSDKD---FVESHYLVFCTKRGIIKKTLLNAY 634

Query: 646 SEEKMKLVVKVT---GDHVAVV 664
           S  +   V  +T   GD V  V
Sbjct: 635 SRPRQNGVKAITVHDGDEVIAV 656


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 202/497 (40%), Positives = 305/497 (61%), Gaps = 14/497 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL   
Sbjct: 13  NTPYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA 
Sbjct: 73  RGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAP 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT
Sbjct: 132 RYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E+  AA  LI NP+ +++ L+ ++ GPD P+GG IV   + I ++Y  GRG 
Sbjct: 192 NMAPHNLVEVISAARHLIANPDATLDDLMRFVPGPDLPSGGRIV-GLDGIRDAYATGRGS 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAE 307
           F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D  +   
Sbjct: 251 FKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRKH 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +R+V+  KN   +P+ +++ ++  S ME  F +N   L  G+ PQ + L  +L  ++ H
Sbjct: 311 GLRLVIELKN-GFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQ-PQTLGLVQLLTVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+       ++S + LT
Sbjct: 369 RIDVVRRRTVFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDELRREIAELEAILGSEERLRTLVSDELGAIAE 488

Query: 485 IFSKSTDLGRRRTTFCE 501
                     RRT   E
Sbjct: 489 EHGTP-----RRTVLLE 500


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 198/485 (40%), Positives = 298/485 (61%), Gaps = 16/485 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     ++K AR+VG+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE R+  +A + +L
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN+ E+ +  +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--G 262
           ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG   +R     EEV  G
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSIPMRGVAHTEEVQLG 239

Query: 263 RGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +G      +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES  D   V+    R 
Sbjct: 240 KGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P+ +++ +   + +++ F   +  L  G+  Q + L  +L+ +L +R   L RR+S  
Sbjct: 300 AEPEKVLKDLQRRTALQSNFGAILLALVNGQP-QQLSLRQLLQTFLDYRELTLIRRTSHA 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R+E+++GL+ A  N+  +IA+I   ++    +  ++ R  L E Q DA+L + L
Sbjct: 359 LRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLDLNERQADAVLAMPL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE+  ++ E+DNL  EKE++  LL +  Q  + +  E++ +K+ FS       RR
Sbjct: 419 RRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLLDAMVAELKTLKKRFSTP-----RR 473

Query: 497 TTFCE 501
           T   E
Sbjct: 474 TRLVE 478


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 388/717 (54%), Gaps = 39/717 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      
Sbjct: 2   MMAERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RY
Sbjct: 62  FRKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT I
Sbjct: 122 TEARLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +A L  ID P  +++ L+  + GPDFPTGGII + ++ I ++Y  GRG   
Sbjct: 182 PPHALGEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGII-QGKDGIRKAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   
Sbjct: 241 IRAKATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLS 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  D + ++  ++  +D++  +  NM V    R P++M L  +L  ++AHR++V
Sbjct: 301 IVIELKKDADAEAILNYLYKNTDLQVPYSFNM-VAIHERRPKLMSLPELLDAYIAHRKDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQV 428
           +  RS F ++  + R  I+ GL+ A   +DE+IA IR + DK   K  +++ +  TE Q 
Sbjct: 360 VTNRSHFELKKANERKHIVDGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++ 
Sbjct: 420 EAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHF 545
                 RRT   E     K  + +A+I  E + V ++  G+++  S +S+S  +   +  
Sbjct: 480 E-----RRTVIEEEIEELKVNV-EALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGM 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           KE D L   L  +TTD +LL +  G     P   L  +  +  G+ I  LI +  + ++V
Sbjct: 534 KETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELV 593

Query: 604 TAF---VYDSTCKLLVVSSKGNAFIVEESE----------IIANTRKGKTFLKVSSEEKM 650
                  +++  +L+ V+  G     E S+          +  N +     + V + +  
Sbjct: 594 AVVPVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGR 653

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
            L+   T D  A        L+F+ ++I  +  R  GV+    K+G     +C  IC
Sbjct: 654 GLIWMATHDGYA--------LLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVC-PIC 701


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 216/680 (31%), Positives = 380/680 (55%), Gaps = 25/680 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G     AF+K
Sbjct: 5   ERFQDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R+ L+   GN G++DGDS AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +D+  VDF   +++ D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAISSELLRDIDKRTVDFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +DNP+ ++ +L+  I GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 185 ALHEVLDAVLMRMDNPQATVAELMTVIKGPDFPTGGII-QGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E +  G   IV+TEIP++V K+ +I+KI +    +++  + ++RDES    +RIV+
Sbjct: 244 KAEIEPLKGGKEQIVITEIPFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIVI 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + +    ++  ++  +D++  +  NM V    R P +M L  +L  ++ H++EV+ 
Sbjct: 304 ELK-KDVQAQGILSYLYKNTDLQVSYNFNM-VAIYKRRPTMMTLQTMLDAYIEHQKEVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DK--PKPVMVSRFSLTENQVDA 430
           +RS F +Q    R+ I++GL+ A   +D++I  IR+  DK   K  +++ F  +E Q +A
Sbjct: 362 KRSEFDLQKASDRMHIVEGLMKALSILDKVIKTIRSSTDKRDAKNNLIAAFDFSEAQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   ++ E D+L     ++  +L S  +  N I  E+  +++ F++  
Sbjct: 422 IVSLQLYRLTNTDITDLQKEEDSLKKTIAELTGILTSSTKLKNVIKKELANIRKQFAEP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R +  E    +    ++ MI  E + V ++  G+++   + S   S       KE
Sbjct: 481 -----RRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVKRTSTRSYAASNGKDFAMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D L    + +T   IL+ +T G     P   L  +  +  G+ +  +I L+ N+ ++  
Sbjct: 536 TDHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDIKWKDLGQHLSSIIQLDANESVLAV 595

Query: 606 FV---YDSTCKLLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +    +D+   +L VS  G      +++ +I   +R  KT + + S + M     VT + 
Sbjct: 596 YPFENFDADASILTVSKLGQVKRSALKDYQIQRYSRTVKT-MNLKSGDAMIYAGLVTKET 654

Query: 661 VAVVGENRKLLI-FSIDQIP 679
              +G N+   + F ++++P
Sbjct: 655 ELFIGTNQAYGVRFPLEEVP 674


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/442 (42%), Positives = 279/442 (63%), Gaps = 13/442 (2%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+VG+V+GK HPHGDQSV
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVRL Q F  RYPL++G GNFG++D D  AA RYTE R+  +  E +L  V E  VD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F   ++    EP V P++ P L+ NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNP++ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-----GRGSWCI 268
            +KL++ I GPDFPTGG I+ + E I E+Y  GRG   +R    +E+V      R    I
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIAT-EGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLME 327
           VVTE+P+QV K+  IEK+A L+ A ++  + DIRDES  E +R+V+  K R   P++++ 
Sbjct: 240 VVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELK-REATPEVVLH 298

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  +D+ ++F      L +   P+ + L  IL+E+L  R + L RR    ++  +RR 
Sbjct: 299 NLYQHTDLMSKFGAIFLAL-VNSQPRQLSLKQILEEFLGFREQTLLRRYRSELEIAERRE 357

Query: 388 EILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            ++ GLL A   +DE+I I+RN       K  + +R   +  Q DAIL + LR L  LE 
Sbjct: 358 HLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETRLDFSTEQADAILAMPLRRLTGLEG 417

Query: 445 YQIKSELDNLLAEKEKIDSLLN 466
            +++ E   L A+ +++  LL+
Sbjct: 418 KKLQEEATELAAQIQRLRRLLS 439


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/523 (38%), Positives = 302/523 (57%), Gaps = 17/523 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M +MGL       K
Sbjct: 10  EKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMGLRPDRGHVK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R P+I G GNFG++D D  AA RYTE 
Sbjct: 70  SSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DGPAAPRYTEV 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  ++  +DED VD    Y+    +P V P+  PNLL NG+SGIAVGMAT++P H
Sbjct: 129 RMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAVGMATNMPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ NP+  +E+++ ++ GPD P GG IV   E I E+Y  GRG F+ RA
Sbjct: 189 NLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIV-GLEGIREAYASGRGIFKTRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E V      IV TE+PY V   ++IEK+ + I AK++  +  I++  +    +R+V
Sbjct: 248 TAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLTDRHHGMRLV 307

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN   +P+ ++  ++  + +E  F +N NV  +G  PQ + L  +L+ +L HR +V 
Sbjct: 308 VEVKN-GFNPEAVLLQLYRHTPLEDSFGIN-NVALVGGQPQTLGLIELLRVFLDHRLDVT 365

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS FR+    R + ++ GLL A +NIDE+IA+IR+ D        ++  F LTE Q +
Sbjct: 366 RRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQVFDLTEPQAE 425

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    +++     LL     ++ +LNS ++  + ++ E+ EV       
Sbjct: 426 YILELRLRRLTKYSVIELEQRRSELLEAIADLEDVLNSPERLRDLVSAELDEVARAHGTP 485

Query: 490 TDLGRRRTTFCEVSRADKATLQQAM---IEKEPITVVISNRGW 529
                RRT   E   A +A    A+   +  +P  V++S  G 
Sbjct: 486 -----RRTVLLESDGATEAGSSAALPLEVADDPCFVLLSGTGL 523


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 214/696 (30%), Positives = 398/696 (57%), Gaps = 26/696 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P++ ++K++E++ GPDFPTGGII + +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGGII-QGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  E +RI + 
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +
Sbjct: 302 LK-KEADSQLVLNYLFKNTDLQVNYNFNMVAID-NMTPVQTGVLQMLRSYVKHREDVIIK 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F +   ++R+ +++GL+     +DE++A IR   N+   K  +   F  TE Q +AI
Sbjct: 360 RSQFDLNKAEKRLHLVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F++   
Sbjct: 420 VTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFARP-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
             RR     EV   +    +  +I  E   V ++  G+I+     S   SAL     ++ 
Sbjct: 478 --RRSELQDEVQTIEIEASE--LIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L    +A TT  +L+ +  G     P   L   R    GE + Q L + + ++ ++  
Sbjct: 534 DELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSSDEKVIYV 593

Query: 606 FVYDSTC--KLLVVSSKGNAFIVE-ESEIIANTRKGKT--FLKVS-SEEKMKLVVKVTGD 659
            + D+     L+VV+  G    +E ES     T + K+  + K+  +++++ L+  V   
Sbjct: 594 QIVDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEVVLISPVQFT 653

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
            + ++ EN   L F++D +P + +R  GV+  + K+
Sbjct: 654 DLMLISENGYALRFNLDDVPVLGARAAGVKAMNLKN 689


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 339/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALI+NP+++ ++L+  I GPDFPTGG I+  RE I E+Y  GRG   +
Sbjct: 196 PHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQIL-GREGIRETYLGGRGSITM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D
Sbjct: 255 RGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGE-PILLTLRKMLEVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L++
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++ + 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDR 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
           ++       RRT   ++       L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 YTTP-----RRTEILDLG----GGLEDIDLIANERSVVLVTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      +++K+ +  +  D +LL S  G +Y LPA
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPA 585


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 215/654 (32%), Positives = 354/654 (54%), Gaps = 53/654 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++K +++   L + +L Y++S I  RA+PD+RDG KP  RR+++AM ++G+  G A  K
Sbjct: 4   DSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAHVK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVGE +G  HPHGDQS+Y +LV + QP+  R  L+ GQGNFG+++GD+AA+ RYTEA
Sbjct: 64  CAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +   +++ +++  VDF+  Y+    EP V PS FPN L NG +GIAVGMAT++  H
Sbjct: 124 RLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLAPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A ID P+I++ +L++YI GPDFP    I   R  I E +R GRG  R+R 
Sbjct: 184 NLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIR-GIEEYFRTGRGSMRLRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   IV+ E+PY V ++ L E+IAEL+  K +  +  +RD S E+ RI + 
Sbjct: 243 KVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEETRIEIE 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R   P +++  +F L+ +ET F +NM  +   R P+ + L   +  ++ HRR+V+ R
Sbjct: 303 LK-RDARPQVVVAQLFKLTALETSFSVNMLAIHQNR-PKQLSLKEAIDAYIEHRRDVIIR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R E+L+  L+A  ++D+ I IIR   N D+ + +   R+  +E QV+AI
Sbjct: 361 RTRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDRYVFSERQVNAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  +E+ ++K E D +L E + +  +L    +    I  E+R +++ ++    
Sbjct: 421 LELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILAREVRVLTIIKDELRVIRDKYATPRK 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                   C +         + +I  + + V +S+RG+++   +    L     + G  L
Sbjct: 481 --------CPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTPATEYRLQG---RGGKGL 529

Query: 552 K-------------------IALHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHG 587
           K                    ++ AH  D +L  +  G+ Y      LP G+  S    G
Sbjct: 530 KGMETKATGKDEPDDFVEHLFSVQAH--DYLLFFTNTGRVYVERVFELPEGSRTS---TG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGK 639
            +I+ +++L  ++ I      + T         GN     E    +   TR GK
Sbjct: 585 RSIKNVLNLKPDEKIAALLRLERTT-----DDNGNDITFREDAGFVFFATRNGK 633


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 224/714 (31%), Positives = 387/714 (54%), Gaps = 39/714 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 3   ERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 123 RLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  ID P  +++ L+  + GPDFPTGGII + ++ I ++Y  GRG   +RA
Sbjct: 183 ALGEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGII-QGKDGIRKAYETGRGKIIIRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   ++ 
Sbjct: 242 KATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  +  NM V    R P++M L  +L  ++AHR++V+  
Sbjct: 302 ELKKDADAEAILNYLYKNTDLQVPYSFNM-VAIHERRPKLMSLPELLDAYIAHRKDVVTN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           RS F ++  + R  I++GL+ A   +DE+IA IR + DK   K  +++ +  TE Q +AI
Sbjct: 361 RSHFELKKANERKHIVEGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++    
Sbjct: 421 VTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYADE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RRT   E     K  + +A+I  E + V ++  G+++  S +S+S  +   +  KE 
Sbjct: 479 ---RRTVIEEEIEELKVNV-EALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGMKET 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D L   L  +TTD +LL +  G     P   L  +  +  G+ I  LI +  + ++V   
Sbjct: 535 DRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELVAVV 594

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESE----------IIANTRKGKTFLKVSSEEKMKLV 653
               +++  +L+ V+  G     E S+          +  N +     + V + +   L+
Sbjct: 595 PVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGRGLI 654

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706
              T D  A        L+F+ ++I  +  R  GV+    K+G     +C  IC
Sbjct: 655 WMATHDGYA--------LLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVC-PIC 699


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/477 (41%), Positives = 286/477 (59%), Gaps = 14/477 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA S I  RA+PD RDG KPV RRI+  M  MGL       KS+R+VG+V+G+LHPH
Sbjct: 29  FLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSSRVVGDVMGRLHPH 88

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD ++Y++LVRLAQPF  R PLI G GNFG++D D  AA RYTEAR+   A  +   +DE
Sbjct: 89  GDVAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARLASPALALTADIDE 147

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+   +EP V P+ FPNLL NGTSGIAVGMAT++P HN+ E+  AA  LI +
Sbjct: 148 DTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTSGIAVGMATNMPPHNLVEVVSAARHLITH 207

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE S+E L+ ++ GPD PTGG+IV   + I E+YR GRG F  RA   +E +      IV
Sbjct: 208 PEASLEDLMAFVPGPDLPTGGMIV-GLDGIREAYRTGRGKFLTRATARIENITPRKKGIV 266

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLME 327
           VTE+PY V   ++I +I + + AK++  + D+ D  +     R+V+  KN   +P+ ++ 
Sbjct: 267 VTELPYLVGPEKVIARIKDAVSAKKLQGITDVADLTDRKNGTRLVIGVKN-GYNPEAVLA 325

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  + +E  F +N NV  +   P+ + L  +L  ++ HR  V+ RR+ FR+     R 
Sbjct: 326 QLYKHTPLEDSFGIN-NVCLVDGQPRTLGLRELLDVFVRHRMTVVERRTRFRLGKRRERQ 384

Query: 388 EILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            +++GLLIA L+IDE+I ++R+ D     +  ++  F L+E Q   IL L+LR L K   
Sbjct: 385 HLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQVFDLSEAQASYILELQLRRLTKFSV 444

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            +++ E D L  E E+++++L         ++ E+  V E F        RRT   E
Sbjct: 445 IELEKERDELAREIEQLEAILADETLLRGVVSRELAAVAEEFGTP-----RRTVLLE 496


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 167/336 (49%), Positives = 241/336 (71%), Gaps = 2/336 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPH
Sbjct: 8   FLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 68  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 127

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +N
Sbjct: 128 DTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSEN 187

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+
Sbjct: 188 PEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERII 246

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ ++
Sbjct: 247 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 306

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 307 YKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYL 341


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/605 (33%), Positives = 351/605 (58%), Gaps = 20/605 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F
Sbjct: 3   MQQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++E +L+ +D+  VDF   +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+ +A +  ID+P+ ++++L++++ GPDFPTG II +  + + ++Y  G+G   V
Sbjct: 183 THNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAII-QGIDELEQAYETGKGKVVV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
           R++  +E +  G   IVVTEIPY+V K+ L++KI E+ + K+I  + ++RDES    ++I
Sbjct: 242 RSKTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRRE 370
           V+  K  +    +L    ++L + E +   N N++++  R P  + L  IL  ++AH++E
Sbjct: 302 VIELKKEANAEGILN---YLLKNTELQINYNFNMVAIDARRPMQVGLKKILDSYIAHQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427
           V+ +R+ F +     R+ I+ GL+ A   +DE+IA+IRN +  K     +V  +  T  Q
Sbjct: 359 VITKRTQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVETYDFTMTQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   ++ E  +L      + S+L S K     +  E+RE+K+ ++
Sbjct: 419 AEAIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILKSEKTLLQVMKQELRELKKKYA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH--- 544
                   R T  +    +     + +I +E + VV + +G+ + +   S   SA     
Sbjct: 479 TP------RLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKRVSPRSFASSAPEENG 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            +EGD + +     T D ++L ++ G    LP   +   +    G  +   I L  N+ I
Sbjct: 533 LREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAKWKDVGHHLSQSISLATNEII 592

Query: 603 VTAFV 607
           +   V
Sbjct: 593 LAGMV 597


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 343/592 (57%), Gaps = 36/592 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+ +  + L +  ++ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM +
Sbjct: 3   DDTNGGDNLFDR-IEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAMFD 61

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSA+ V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 62  NGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGN 121

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +++ + ED V F+  Y+ + SEP V PS+ PNLL NG+ GI
Sbjct: 122 DGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSGGI 181

Query: 184 AVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN+ E+ +A   L++NP      ++E  + ++ GPDFPT G+IV   + I
Sbjct: 182 AVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIV-GEKGI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG  R+R +  +EE G     IV+TE+PYQV    L+  IAE +   ++  + 
Sbjct: 241 DDAYRTGRGSIRMRGKAEIEEEG-SRQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGIS 299

Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            I DES++ V  RIV+  K R   P +++ +++  S ++T F  NM  +  G VP+ + L
Sbjct: 300 KIDDESSDRVGLRIVVTLK-RDAVPRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +L  ++ H+ +V+ RR+ FR++  +    IL+GL+ A   +DE+IA+IRN    D  +
Sbjct: 358 DQMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIAR 417

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQ 471
             ++   ++ E Q +AIL ++LR L  LE  +I    +EL+ ++A+ E I   L   ++Q
Sbjct: 418 EGLMDLLTVDEIQANAILAMQLRRLAALERQKIIDQLAELERIIADLEDI---LAKPERQ 474

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +  E+ E+ E +        RRT   ++  A     ++ +I +E + V I++ G+ +
Sbjct: 475 RAIVRDELAEIVEKYGDE-----RRT---QIVSATGDVSEEDLIARENVVVTITSTGYAK 526

Query: 532 SLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             K  S          +     ++ D ++      T D +L  +  G+ Y L
Sbjct: 527 RTKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRL 578


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 235/710 (33%), Positives = 387/710 (54%), Gaps = 41/710 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 136 SRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PVLLTLRKMLQVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            + + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +     LTE
Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLTE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLREK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
                    RRT   ++       L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 HCLP-----RRTEILDLG----GGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              K G      +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I   ++   +D    LL+++  G  FI   S    +  +    + +  EE   
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGG--FIKRTSLSAFSKIRSNGLIAIGLEEGDA 662

Query: 652 LV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDG 695
           L    + V GD V +       + F +  +++  + R  +GVR  + + G
Sbjct: 663 LTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGG 712


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/703 (30%), Positives = 391/703 (55%), Gaps = 35/703 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGGII + ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGII-QGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R P+ + L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQR-PEHVGLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR ++D+   +  +V  +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V      + D
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAV------AKD 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++   ++S++  D +    K+G
Sbjct: 477 YRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +  +  +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-------KVSSEEKMKLVVKV 656
            + +     + L+ +S G  +I + +   A+   G+T+        K+ + E   + VK 
Sbjct: 597 AFKTLKEPGRFLIATSDG--YIKQTA--FADLTPGRTYKSRAAVYEKLKTAEARVVAVKY 652

Query: 657 TGDHVA----VVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKD 694
             + V     ++ +N   L + +D++    +R  GVR    +D
Sbjct: 653 LTEPVEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRD 695


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/578 (33%), Positives = 331/578 (57%), Gaps = 20/578 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E + GPDFPTGGII  + E I ++Y  G+    VR+R
Sbjct: 186 LSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAE-IKKAYETGKSRVVVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 245 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHF-TPRQVGLQKILSSYIAHRKSIIIKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 364 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++      +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGDEATMYNVMKRELREVKKKFA----- 478

Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
           G R +     S+A   D A+L    I +E   V ++  G+I+     S   S+L     +
Sbjct: 479 GPRLSELQAESQAIEIDSASL----ILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           + D L     A TTD +LL +  G     P   L   R
Sbjct: 535 DDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLR 572


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/703 (30%), Positives = 391/703 (55%), Gaps = 35/703 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGGII + ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGII-QGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R P+ + L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQR-PEHVGLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR ++D+   +  +V  +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V      + D
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAV------AKD 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++   ++S++  D +    K+G
Sbjct: 477 YRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +  +  +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-------KVSSEEKMKLVVKV 656
            + +     + L+ +S G  +I + +   A+   G+T+        K+ + E   + VK 
Sbjct: 597 AFKTLKEPGRFLIATSDG--YIKQTA--FADLTPGRTYKSRAAVYEKLKTAEARVVAVKY 652

Query: 657 TGDHVA----VVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKD 694
             + V     ++ +N   L + +D++    +R  GVR    +D
Sbjct: 653 LTEPVEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRD 695


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 337/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALI+NPE+    L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQIL-GRSGIRETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PILLTLRKMLEVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+E
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++ 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRDR 493

Query: 486 FSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           +        RRT   +++   D   L    I  E   V+++  G+++ +     + ++  
Sbjct: 494 YPIE-----RRTEILDLAGGLDDIDL----IANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK-------EG-DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +       +G +++K+ +  +  D +LL S  G AY LPA
Sbjct: 545 TRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPA 585


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 222/622 (35%), Positives = 355/622 (57%), Gaps = 33/622 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 19  LRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGE 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-A 140
           V+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +  
Sbjct: 79  VLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTT 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ ++ + VD+ D ++    EP V P++ P+LL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 139 DSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATNIPPHNLTELI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
              LALI +PE+    LL  I GPDFPTGG I+  R  I E+Y  GRG   +R    +E 
Sbjct: 199 NGLLALIADPELDDRALLALIPGPDFPTGGQIL-GRRGIRETYTTGRGSVTMRGVASIET 257

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  D   ++   
Sbjct: 258 LEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGISDIRDESDRDGMRIVIEL 317

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ ++F L+ +++ F  +M  L +   P ++ L  +L+ +L  R E + RR+
Sbjct: 318 RRDAYPQVVLNNLFKLTPLQSNFSAHMLAL-VNSEPVLLTLRRMLQVFLEFRIETIERRT 376

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+E Q DAIL 
Sbjct: 377 RYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARLQLQERHGLSEIQSDAILQ 436

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E +       
Sbjct: 437 MQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIEAELIQLRERYPSE---- 492

Query: 494 RRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG-- 548
            RRT   ++    +  L+   +I  E   V+++  G+++ +     + ++     K G  
Sbjct: 493 -RRTEILDL----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTR 547

Query: 549 ----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDI 602
               +++++ +  +  D +LL S  G  Y +PA  +  G RG  G  +  L+ +   + I
Sbjct: 548 SQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYRVPVGSRGAKGTPVVQLLPIPREEQI 607

Query: 603 ---VTAFVYDSTCKLLVVSSKG 621
              V    +D   +LL+++S G
Sbjct: 608 TSLVAVSAFDDDVQLLMLTSGG 629


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/495 (38%), Positives = 298/495 (60%), Gaps = 14/495 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS MGL     
Sbjct: 21  LEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRMGLRPDRG 80

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA RY
Sbjct: 81  HVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT++
Sbjct: 140 TEARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIAVGMATNM 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN++E+   A  L+ +P   +E ++ +I GPD P+GG IV   + + ++Y  GRG FR
Sbjct: 200 APHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTFR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDV 309
           +RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D  +    +
Sbjct: 259 MRAAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGL 318

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+ +  K+   +P  ++ +++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR 
Sbjct: 319 RLQIELKS-GFNPQAVLAALYRHTPLEETFGINNVALVDGQ-PQTLGLLPLLRVYVDHRL 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
           +V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D        ++  F LT+ 
Sbjct: 377 DVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQV 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +  
Sbjct: 437 QADHILELRLRQLTKFSRIELEAERDELQAAIAELEAILASDARLREVVSSELQAVADEH 496

Query: 487 SKSTDLGRRRTTFCE 501
                   RRT   E
Sbjct: 497 GDD-----RRTVLLE 506


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/463 (41%), Positives = 291/463 (62%), Gaps = 13/463 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     F+
Sbjct: 3   KKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERPFR 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRYTE 122

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A E  L+ +  + V F + ++    EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ SR SI E Y  G+G   +
Sbjct: 183 PHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSR-SIKELYETGKGSITI 241

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EEV  G+G      I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES  
Sbjct: 242 RGVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           D +RIV+  K  S + +L++ +++  + ++T F      L  G+ P+ + L   L  +L 
Sbjct: 302 DGMRIVIELKKDS-NSELVISNLYKQTTLQTNFGAIFLALIKGK-PKQLNLKEYLSYFLE 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423
            R E++ +R+ + ++    ++EI +GL  A  NI ++I II    N  K +  ++  F L
Sbjct: 360 FREEIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIENFFL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +E Q +++L++ L+ L  LE+ +I  E+ +L  +K     LLN
Sbjct: 420 SEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNYFQKLLN 462


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 223/752 (29%), Positives = 402/752 (53%), Gaps = 46/752 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSII-QGQDEIRKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  R
Sbjct: 302 LKKDADTQTVLNYLLKYTDLQVNYNFNMVAID-NYTPHQVGIQKILSSYIAHRKSIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F M   ++R+ I++GL+     +DE+IA+IR   N+   K  +   ++ TE Q +AI+
Sbjct: 361 SKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIADEATMYNVMKRELREVKKKFGNP--- 477

Query: 493 GRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             RR+      E    D A+L    I +E   V ++  G+I+     S + S L     +
Sbjct: 478 --RRSQLQKEAETIEIDTASL----IVEEETFVSLTQGGYIKRTSPRSFNASTLEEIGKR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603
           + DSL     A TT  +L+ +  G     P   L   R    GE + Q + +  +++ ++
Sbjct: 532 DDDSLIFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRWKEIGEHLSQTITNYGNDEKVL 591

Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEKMKLVVK-VT 657
            A + D   +     V+  G     E +E+    T + K+  + K+ +E+   + V+ + 
Sbjct: 592 YAELVDDFKSGTYYSVTQLGQIKRFERAELAPWRTYRSKSLKYAKLKNEQDRIIAVQPIL 651

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            + + ++      L FS +++P         +Q  K  G+  +   K      +I SA  
Sbjct: 652 FEDIMLISHQGYALRFSNEEVP---------VQGLKTAGVKAMNLKKD----DYIASAFL 698

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +Y     D    L +RG +  +  +  P++ +
Sbjct: 699 AY----TDSFFVLTQRGSLKRVATEDIPQTSR 726


>gi|332522736|ref|ZP_08398988.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314000|gb|EGJ26985.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 836

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 329/574 (57%), Gaps = 20/574 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KS
Sbjct: 19  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKS 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 79  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +LQ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN
Sbjct: 139 LSEISGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P+  ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR++
Sbjct: 199 LAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSII-QGQDEIRKAYETGKGRVVVRSK 257

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 258 TDIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIE 317

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P  + +  IL  ++AHR+ ++  R
Sbjct: 318 LKKDADTQTVLNYLLKYTDLQVNYNFNMVAID-NYTPHQVGIQKILSSYIAHRKSIIIER 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F M   ++R+ I++GL+     +DE+IA+IR   N+   K  +   ++ TE Q +AI+
Sbjct: 377 SKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQAEAIV 436

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F      
Sbjct: 437 TLQLYRLTNTDIVTLQNEEEELRNLITTLGAIIADEATMYNVMKRELREVKKKFGNP--- 493

Query: 493 GRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546
             RR+      E    D A+L    I +E   V ++  G+I+     S + S +     +
Sbjct: 494 --RRSQLQKETETIEIDTASL----IVEEETFVSLTQGGYIKRTSPRSFNASTIEEVGKR 547

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           + D L    +A TT  +L+ +  G     P   L
Sbjct: 548 DDDRLIFVTNAKTTQHLLIFTDLGNVIYRPVHEL 581


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 237/705 (33%), Positives = 373/705 (52%), Gaps = 74/705 (10%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           +HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+
Sbjct: 1   MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ VDF   Y+  ++EP + P++ 
Sbjct: 61  DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           PNLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT GII
Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELII 291
                 + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+ 
Sbjct: 181 Y-GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVT 239

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L  G+ 
Sbjct: 240 EKRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ- 298

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+   
Sbjct: 299 PRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAP 358

Query: 412 KPKPV-----------------MVSR----------------------------FSLTEN 426
            P P+                 M+SR                            + L++ 
Sbjct: 359 TP-PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDT 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   IL +RL+ L  LE+ +I  E   ++A+   I  LL+   +     A  + E+  I 
Sbjct: 418 QAQEILQMRLQRLTGLEQDKIVQEYREVMAQ---IADLLDILARPERITAIIVEELTLIR 474

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
           S   + G  R +  E +  +  T  + +I  + + V +S+ G++        R+ K    
Sbjct: 475 S---EFGDERRSQIEHNATELDT--EDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
              A   KE D +     A+T D IL  S  G+ Y L    +  G     G  I  +  L
Sbjct: 530 GKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPL 589

Query: 597 NHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  +    I+    +D    + + +SKG       +E  +N RK         E    + 
Sbjct: 590 SPGEKINVILPVKQFDEQHFVFMATSKGTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIG 648

Query: 654 VKVT-GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             +T G H V +  +  K + F  + +  M R  +GVR  + ++G
Sbjct: 649 ADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEG 693


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 350/615 (56%), Gaps = 22/615 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++L+E I GPDFPTGGII +  + I ++Y  G+G   +R +  +E +  G   
Sbjct: 198 QMPSCSVDELMEVIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++ H++EV+  RS + +Q    R 
Sbjct: 317 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + E+++S+L++ K+    I   ++ +K+ ++ +     RR+   E   
Sbjct: 436 TALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADT-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D +      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+    LI ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLF 609

Query: 617 VSSKGNAFIVEESEI 631
            +  G   +V+++E+
Sbjct: 610 FTKNG---MVKKTEL 621


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 338/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQIL-GRTGIRETYLSGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    VE +   GR     +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PILLTLRKMLEVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+ 
Sbjct: 374 IETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLSA 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E 
Sbjct: 434 VQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRER 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
            S       RRT   +++      L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 HSVP-----RRTEILDLA----GGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      +++K+ +  +  D +LL S  G AY LPA
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPA 585


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 350/615 (56%), Gaps = 22/615 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++L+E I GPDFPTGGII +  + I ++Y  G+G   +R +  +E +  G   
Sbjct: 198 QMPSCSVDELMELIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++ H++EV+  RS + +Q    R 
Sbjct: 317 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + E+++S+L++ K+    I   ++ +K+ ++ +     RR+   E   
Sbjct: 436 TALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADT-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D +      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+    LI ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLF 609

Query: 617 VSSKGNAFIVEESEI 631
            +  G   +V+++E+
Sbjct: 610 FTKNG---MVKKTEL 621


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 350/615 (56%), Gaps = 22/615 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++L+E I GPDFPTGGII +  + I ++Y  G+G   +R +  +E +  G   
Sbjct: 198 QMPSCSVDELMEVIKGPDFPTGGII-QGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++ H++EV+  RS + +Q    R 
Sbjct: 317 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + E+++S+L++ K+    I   ++ +K+ ++ +     RR+   E   
Sbjct: 436 TALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADT-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D +      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+    LI ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLF 609

Query: 617 VSSKGNAFIVEESEI 631
            +  G   +V+++E+
Sbjct: 610 FTKNG---MVKKTEL 621


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 189/464 (40%), Positives = 287/464 (61%), Gaps = 11/464 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTPEHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P  +++ L++ + GPD+P  G I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPG-GGIIIGRSGIREAYETGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R++  +E V      I+VTE+P+ V   R++E+I++ I A+++  +    D+ D      
Sbjct: 255 RSKTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRH-NGT 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L  W+ HRR
Sbjct: 314 RIVIEIKT-GFDPNAVLAQLFKHTPLQESFTINNVALVDGR-PHTMGLRELLDVWILHRR 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS FR+     R+ +++GLL+A L+IDE+I +IR   + +  K  ++S F L E 
Sbjct: 372 TVIRRRSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSKLISVFDLDEI 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           Q   IL+LRLR L K+   +++ E ++LL + ++++ +L+S  Q
Sbjct: 432 QAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEILSSASQ 475


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 304/499 (60%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A E +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL+ I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G+G      ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            +R   L RR++  ++  + R+E+++GL+ A  ++  +IA+I+          S      
Sbjct: 359 DYRELTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L A+++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQRLKLLLDNRDQLLDALTKELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           K+ F+       RRT   E
Sbjct: 479 KKRFATP-----RRTRLVE 492


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 397/720 (55%), Gaps = 35/720 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTEAR++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ S+EKL+E    PDFPTGG I         +++ G G F +RA  C++     +  
Sbjct: 199 DHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKTGEGKFIIRA--CIDFKINDNKI 255

Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+++ IPY+  K+ +I++I ++I  K +  L ++RDES A+ + I++  K + ++ + 
Sbjct: 256 NQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTK-KDINLEN 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +   ++  +++E  +     +  + R P ++ L   L   + H  +V+ +   + +  I 
Sbjct: 315 VKNYLYKKTNLEISYNTKF-IAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKIL 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +AI+ +RL +L +
Sbjct: 374 LRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTR 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            + + +K+E   L  E + +   +NS + + N +  ++ E K+ F       R+   F E
Sbjct: 434 TDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTFG----FERKTKLFDE 489

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAH 558
           + + +    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      +
Sbjct: 490 LVKVE--INEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFYHNIIN 547

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL-- 614
           + D+IL++++  K   L A  + S R    GE +   +  + N+ ++  ++++   K+  
Sbjct: 548 SHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAVYIWNEQFKIDE 607

Query: 615 --LVVSSKGNAFI-VEESEI-IANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             LV++S+ N    +E SE+ I    K  + +K++  + +    L+ K     +  + + 
Sbjct: 608 YQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKL 667

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGRSYNRSE 723
              L+F + +I  ++R  KG+++   K       I      G     +++   + +N SE
Sbjct: 668 GLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISE 727


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 397/720 (55%), Gaps = 35/720 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTEAR++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ S+EKL+E    PDFPTGG I         +++ G G F +RA  C++     +  
Sbjct: 199 DHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKTGEGKFIIRA--CIDFKINDNKI 255

Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+++ IPY+  K+ +I++I ++I  K +  L ++RDES A+ + I++  K + ++ + 
Sbjct: 256 NQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTK-KDINLEN 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +   ++  +++E  +     +  + R P ++ L   L   + H  +V+ +   + +  I 
Sbjct: 315 VKNYLYKKTNLEISYNTKF-IAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKIL 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +AI+ +RL +L +
Sbjct: 374 LRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTR 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            + + +K+E   L  E + +   +NS + + N +  ++ E K+ F       R+   F E
Sbjct: 434 TDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTFG----FERKTKLFDE 489

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAH 558
           + + +    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      +
Sbjct: 490 LVKVE--INEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFYHNIIN 547

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL-- 614
           + D+IL++++  K   L A  + S R    GE +   +  + N+ ++  ++++   K+  
Sbjct: 548 SHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAVYIWNEQFKIDE 607

Query: 615 --LVVSSKGNAFI-VEESEI-IANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             LV++S+ N    +E SE+ I    K  + +K++  + +    L+ K     +  + + 
Sbjct: 608 YQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKL 667

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGRSYNRSE 723
              L+F + +I  ++R  KG+++   K       I      G     +++   + +N SE
Sbjct: 668 GLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISE 727


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 339/581 (58%), Gaps = 26/581 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 18  LEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 77

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG+ID D  AA RYT
Sbjct: 78  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSIDNDPPAAMRYT 137

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+I
Sbjct: 138 ESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 197

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI NP+++ +++++ I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 198 PPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQIL-GRSGIRETYLSGRGSVT 256

Query: 252 VRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +   GR     I++T++PYQ  K+ LIE+IA ++  K++  + DIRDES  
Sbjct: 257 MRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGISDIRDESDR 316

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  NM  L  G  P  + L  +L  +L  
Sbjct: 317 DGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGE-PITLSLLRMLNVFLDF 375

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R   + +R+ + ++  + R  +L GLL+A   +DEIIA+IR+       K  +     LT
Sbjct: 376 RVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQLQEIHGLT 435

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++LL +      +L++  + +  I  E+  +KE
Sbjct: 436 DVQADAILQMQLRRLTALESDKIRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKE 495

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
            F +      RRT   ++    +      +I  E   V+++  G+++ +  +  + ++  
Sbjct: 496 KFPQV-----RRTEILDLGSGLEDI---DLIANERSVVLLTETGYLKRMPVNEFEATSRG 547

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      + +K+ +  +  D +LL S  G +Y++PA
Sbjct: 548 TRGKSGTRSQGEEEVKLFISCNDHDNLLLFSVRGVSYSVPA 588


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 248/782 (31%), Positives = 409/782 (52%), Gaps = 55/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-SRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   + 
Sbjct: 417 LKELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVH 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+  + E +        RRT   E+  A      + +I +E + V I+  G+       
Sbjct: 477 DELEAIVEKYGDE-----RRT---EILPASGEVTDEDLIARENVVVTITATGYAKRTKVD 528

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586
             +S K     +     K+ D +K      T D IL  +  G+ Y L A  L  SGR   
Sbjct: 529 TYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693
            ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +   
Sbjct: 646 AINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702

Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   ++   +        + ++G    R+  +     G RGG+G +  K  P+ GK +
Sbjct: 703 --GDDQLLAMSVVHDGEFLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRGKLI 759

Query: 752 SS 753
            +
Sbjct: 760 GA 761


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 332/581 (57%), Gaps = 21/581 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I+ +  L +  +K V+L   + + +L+YA+S I  RA+PD++DG KPV RRI++ M E+ 
Sbjct: 2   INQNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELS 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   +++KK+ARIVG+V+GK HPHGD S+Y+++VR++Q F  RYPL+ G GNFG+IDG  
Sbjct: 62  VYSNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHK 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M ++A  +++ +D++ ++F D Y+  + EP+V P+  PNLL NG +GIAV
Sbjct: 122 AAAMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP+HN+ E+ +  +A I +  ISI  L++YI GPDFPT G  +   + +  +Y+ 
Sbjct: 182 GMATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPT-GGELLGLKGLENAYKT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   ++A+  + E  +G   IVVTEIPYQ++KS LIEKIA L+  K I  + D+RDES
Sbjct: 241 GQGSVIIKAKTHILE-EKGKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +     ++    ++ +  +++  ++  S +   F +NM  L + + PQ++ L  IL+ + 
Sbjct: 300 SRQGMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVAL-VDKKPQLVSLKTILEAFF 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
             R +V+ ++  F ++    R  ++   L    +I   I +I+N    K     ++ ++ 
Sbjct: 359 NFRIQVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQYQ 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
               Q  AIL + L+ L   E  ++  E   L  E  +  S++ S  ++   +  E+ E+
Sbjct: 419 FDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAECQSIIESQPKKEKILEKELLEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           K+ +       RR     + +  DK    + +IE++ I + I+N+G+I        R  K
Sbjct: 479 KKKYQDE----RRTVLNFDAALDDK---DEDLIEQKEIIITITNKGYIKVTDAEFYRQQK 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 + +   E D ++  L   T + +L  +  G+ Y L
Sbjct: 532 RGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQL 572


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 248/782 (31%), Positives = 409/782 (52%), Gaps = 55/782 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-SRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES++ V  RIV+  K R     +++ +++  S ++T F  NM  +  G VP+ + LD 
Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 357 MLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   + 
Sbjct: 417 LKELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVH 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+  + E +        RRT   E+  A      + +I +E + V I+  G+       
Sbjct: 477 DELEAIVEKYGDE-----RRT---EILPASGEVTDEDLIARENVVVTITATGYAKRTKVD 528

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586
             +S K     +     K+ D +K      T D IL  +  G+ Y L A  L  SGR   
Sbjct: 529 TYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAAR 588

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642
           G+ +  L++    + I        Y+    L++ + +G    V++S +    + +    +
Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645

Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693
            ++  E   L+   +   GD + +  E  + + F+   DQ+  M R     KG+R +   
Sbjct: 646 AINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702

Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             G   ++   +        + ++G    R+  +     G RGG+G +  K  P+ GK +
Sbjct: 703 --GDDQLLAMSVVHDGEFLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRGKLI 759

Query: 752 SS 753
            +
Sbjct: 760 GA 761


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 316/537 (58%), Gaps = 19/537 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   L + Y  YA S I  RA+PD RDG KPVHRRI+  M++MGL     + 
Sbjct: 15  EERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDMGLRPDRGYV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR+VG+V+GKLHPH D ++YDSLVR+AQ +  R PL+ G GNFG++ G D  AA RYT
Sbjct: 75  KSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++  A ++   +DED V+F   Y+ ++ EP V PS FPNLL NG +GIAVGMAT++ 
Sbjct: 135 EARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P  +++ L+ ++ GPD PTGG I+   + I ++Y  GRG F++
Sbjct: 195 PHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQII-GEQGIRDAYETGRGVFKM 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVR 310
           RA   +E+V      IVVTE+P+     ++I K+ EL+ AK++  + D++D S     ++
Sbjct: 254 RATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKDLSDRFNGLK 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR E
Sbjct: 314 LVIEIKA-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RR+ FR      R+ +++GLLIA ++ID +I IIR  D     K  +++  +L++ Q
Sbjct: 372 VVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLMAALALSDKQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+  LR L + +  +++SE D L  E   + ++L S       ++ E+  + + F+
Sbjct: 432 ATYILDTPLRRLTRFDSLELESERDKLTGEIRDLTAILESDTLLRKVVSDELAAISKQFA 491

Query: 488 KSTDLGRRRTTFCEVSRA--DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                  RR+   E +    +   L+   I  +P+ V++S  G +    S +  + +
Sbjct: 492 TP-----RRSVLVEGALPVFEARPLE---ISDDPVVVLLSATGLLARTASGATKIGS 540


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 209/703 (29%), Positives = 398/703 (56%), Gaps = 30/703 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN++++ L   + +R+  Y+   I++RAIPD+RDG KPV RRI+ AM   G  +   +
Sbjct: 1   MNENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++++A ++L+ ++++ VDF   +++   EP+V P+ +PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L +ID P IS +++++ + GPDFPTGGII+  +  I ++Y  GRG  +V
Sbjct: 181 PHNLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIM-GKSGIKQAYETGRGKIQV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E++  G   I+++EIP++V KS L+++I EL   K++  + ++RDE+  +   +
Sbjct: 240 RGKVDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + ++  ++  +D++  +  NM  +S  R P+++ +  +L  +++H++EV+
Sbjct: 300 AIELKKDANSEGILNFLYKNTDLQIAYNFNMVAIS-DRRPKLLGVRDMLNSFISHQKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RRS +     ++R+ I++GL+ A   +D++I +IRN       K  ++ +F+ TE Q +
Sbjct: 359 TRRSQYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHKFNFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    +++  +LN        I  E++ +++ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILNDETHLKKVIKKELKAIQKEFKEE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   A+    ++ ++  E   + I+  G+I+     S + S    +  K
Sbjct: 479 ------RLSQIEEKIAEIKISKEILVPNEETVISITREGYIKRTSPRSFNASGVTDIGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI- 602
           E D L +A H      I L+ TD G+   +P   L  +  +  G  I  ++ ++ ++ + 
Sbjct: 533 EDDQL-LAYHESNLQHITLVFTDKGRYMYIPNHQLPEIRWKDLGTHISQIVPIDSDERVI 591

Query: 603 --VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTF--LKVSSEEKMKLVVKV 656
             +T   ++S  K+L  +  G   +  +++ E+   TR  +    +K+   + +  +  V
Sbjct: 592 HMITVTDFNSEVKILAATRNGMIKLSSLKDFEV---TRYSRPLINMKLKGNDVVNTIHVV 648

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI 697
           TG +H+ VV +    L +S+ ++ +   +  GV+  + KD  +
Sbjct: 649 TGSEHILVVTKQGMSLHYSLTELNDTGLKAAGVKSINLKDDDV 691


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 397/720 (55%), Gaps = 35/720 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTEAR++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ S+EKL+E    PDFPTGG I         +++ G G F +RA  C++     +  
Sbjct: 199 DHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKTGEGKFIIRA--CIDFKINDNKI 255

Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+++ IPY+  K+ +I++I ++I  K +  L ++RDES A+ + I++  K + ++ + 
Sbjct: 256 NQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTK-KDINLEN 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +   ++  +++E  +     +  + R P ++ L   L   + H  +V+ +   + +  I 
Sbjct: 315 VKNYLYKKTNLEISYNTKF-IAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKIL 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +AI+ +RL +L +
Sbjct: 374 LRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTR 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            + + +K+E   L  E + +   +NS + + N +  ++ E K+ F       R+   F E
Sbjct: 434 TDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTFG----FERKTKLFDE 489

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAH 558
           + + +    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      +
Sbjct: 490 LVKVE--INEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFYHNIIN 547

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL-- 614
           + D+IL++++  K   L A  + S R    GE +   +  + N+ ++  ++++   K+  
Sbjct: 548 SHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAVYIWNEQFKIDE 607

Query: 615 --LVVSSKGNAFI-VEESEI-IANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             LV++S+ N    +E SE+ I    K  + +K++  + +    L+ K     +  + + 
Sbjct: 608 YQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKL 667

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGRSYNRSE 723
              L+F + +I  ++R  KG+++   K       I      G     +++   + +N SE
Sbjct: 668 GLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISE 727


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 224/720 (31%), Positives = 397/720 (55%), Gaps = 35/720 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTEAR++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ S+EKL+E    PDFPTGG I         +++ G G F +RA  C++     +  
Sbjct: 199 DHPDCSVEKLIEICPAPDFPTGGEI-HDLNGCANAHKTGEGKFIIRA--CIDFKINDNKI 255

Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I+++ IPY+  K+ +I++I ++I  K +  L ++RDES A+ + I++  K + ++ + 
Sbjct: 256 NQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTK-KDINLEN 314

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +   ++  +++E  +     +  + R P ++ L   L   + H  +V+ +   + +  I 
Sbjct: 315 VKNYLYKKTNLEISYNTKF-IAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKIL 373

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R+EI++GL+     IDEII IIR   +    K  ++  F+ T NQ +AI+ +RL +L +
Sbjct: 374 LRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEAIIMMRLHNLTR 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            + + +K+E   L  E + +   +NS + + N +  ++ E K+ F       R+   F E
Sbjct: 434 TDIFDLKNEWQTLQDEAKTLQKRINSLQVRKNYLKQKMIEFKKTFG----FERKTKLFDE 489

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAH 558
           + + +    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      +
Sbjct: 490 LVKVE--INEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDILFYHNIIN 547

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL-- 614
           + D+IL++++  K   L A  + S R    GE +   +  + N+ ++  ++++   K+  
Sbjct: 548 SHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAVYIWNEQFKIDE 607

Query: 615 --LVVSSKGNAFI-VEESEI-IANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667
             LV++S+ N    +E SE+ I    K  + +K++  + +    L+ K     +  + + 
Sbjct: 608 YQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKL 667

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT---WIDSAGRSYNRSE 723
              L+F + +I  ++R  KG+++   K       I      G     +++   + +N SE
Sbjct: 668 GLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISE 727


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 338/581 (58%), Gaps = 28/581 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQIL-GRAGIRETYLSGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    VE +   GR     +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PILLTLRKMLEVFLDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+ 
Sbjct: 374 IETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLSA 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E 
Sbjct: 434 VQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRER 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
            S       RRT   +++      L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 HSVP-----RRTEILDLA----GGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              K G      +++K+ +  +  D +LL S  G AY LPA
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPA 585


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 351/615 (57%), Gaps = 22/615 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 19  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 79  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 139 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++L+E I GPDFPTGGII +  + I ++Y  G+G   +R +  +E +  G   
Sbjct: 199 QMPSCSVDELMEVIKGPDFPTGGII-QGVDGIKKAYETGKGKIIIRGKAEIETIRGGREQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 258 IVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 317

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++ H++EV+  RS + +Q    R 
Sbjct: 318 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRH 376

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+L  L   + 
Sbjct: 377 HIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLTNTDI 436

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + E+++S+L++ K+    I   ++ +K+ ++      +RR+   E   
Sbjct: 437 TALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD-----KRRSVIEEKIE 491

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D +      +TTD
Sbjct: 492 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQFEMNTTD 550

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+ +  +I ++ ++ IV A     +D +  LL 
Sbjct: 551 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDETIVKAIPIKEFDPSAYLLF 610

Query: 617 VSSKGNAFIVEESEI 631
            +  G   +V+++E+
Sbjct: 611 FTKNG---MVKKTEL 622


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 237/703 (33%), Positives = 384/703 (54%), Gaps = 43/703 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 24  LRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGE 83

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-A 140
           V+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R+  +  
Sbjct: 84  VLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRLKALTT 143

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ 
Sbjct: 144 DSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHNLGELI 203

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
              LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R    +E 
Sbjct: 204 AGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRGVAAIET 262

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D   ++   
Sbjct: 263 LEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRIVVEL 322

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ +++ L+ +++ F  +M  L  G  P ++ L  +L+ +L  R E + RR+
Sbjct: 323 RRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGE-PILLTLRKMLEVFLDFRVETIERRT 381

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILN 433
            + ++  + R  IL GLL+A   +D IIA+IR         V    R  L+E Q DAIL 
Sbjct: 382 RYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHGLSEVQADAILQ 441

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +      
Sbjct: 442 MQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELAQLRDRHAIP---- 497

Query: 494 RRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG-- 548
            RRT   ++    D   L    I  E   V+++  G+++ +     + ++     K G  
Sbjct: 498 -RRTEILDLGGGLDDIDL----IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTR 552

Query: 549 ----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
               +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+ +   + I
Sbjct: 553 SQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMI 612

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKV 656
            +      ++    LL+++  G  FI        +  +    + +  EE   L    + V
Sbjct: 613 TSLLAVSEFNDDTDLLMLTQGG--FIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAV 670

Query: 657 TGDHVAVVGENRKLLI---FSIDQIPEMSR-GKGVRLQSYKDG 695
           +GD V ++G    + I    S D++  + R  +GVR  + +DG
Sbjct: 671 SGDSV-LIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDG 712


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/336 (48%), Positives = 242/336 (72%), Gaps = 2/336 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPH
Sbjct: 8   FLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++
Sbjct: 68  GDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINK 127

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  N
Sbjct: 128 DTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKN 187

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+
Sbjct: 188 PDITLPELVEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVII 246

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ ++
Sbjct: 247 ITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANANVLLNNL 306

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 307 YKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYL 341


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/499 (38%), Positives = 300/499 (60%), Gaps = 18/499 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +EE ++A+SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     F
Sbjct: 1   MEERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG++D D  AA RYT
Sbjct: 61  KKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYT 120

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +A E +L  +  + V+F   ++    EP+V P++ P L+ NG SGIAVGMATSI
Sbjct: 121 ETRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A + +I  P IS E+LL  I GPDFPTGG ++     + E+Y  G+G   
Sbjct: 181 PPHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIG-TGVKETYLKGKGSIP 239

Query: 252 VRARWCVEEVGRGSW-----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
           +R    +EE+  G        I++TE+PYQ+ KS  IEK+AE++   ++  + DIRDES 
Sbjct: 240 MRGIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESD 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E +RIV+  + R  +P+ ++ +++  + +++ F   +  +  G+ P+ + L   L  +L
Sbjct: 300 REGMRIVVELR-RDSNPEKILNTLYQRTSLQSNFGATLLAIVNGQ-PKQLSLKKFLDIFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
             R   + RR+   +     R+EI++GLL A  N+  +I +I   ++  + +  ++ R  
Sbjct: 358 EFRELTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVRLD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL++ LR L  LE   + +EL+ L  +K  ++ +LN   +    +  E++ +
Sbjct: 418 LTEKQADGILSMPLRRLTNLETQSLYNELEELKEKKSCLEIVLNDRDELLKAMIEELKGL 477

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           ++ F       +R+T   E
Sbjct: 478 RKQFG-----SKRKTKLIE 491


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 241/711 (33%), Positives = 391/711 (54%), Gaps = 43/711 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALI+NPE+  E+LL  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQIL-GRAGIRETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ ++  R
Sbjct: 315 GMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PILLTLRRMLQVFIDFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  LT+
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHGLTD 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++ +  I  E+ ++++ 
Sbjct: 434 IQADAILQMQLRRLTALEADKIRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRDR 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
           +        RRT    ++    A L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 YPIE-----RRTEILNIA----AGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              K G      +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I T      +     LL+++S G  FI        +  +    + ++ EE   
Sbjct: 605 PIPREEAITTLLAVSEFSDDSDLLMLTSGG--FIKRTRLSAFSNIRSNGLIAINLEEGDA 662

Query: 652 LV---VKVTGDHVAVVGENRKLLI---FSIDQIPEMSR-GKGVRLQSYKDG 695
           L      V GD V ++G    + I    S +++  + R  +GVR  + +DG
Sbjct: 663 LTWVRQAVPGDSV-LIGTRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDG 712


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 342/610 (56%), Gaps = 22/610 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MSDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+L+ +D+D V+    +++ + EP V P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A + L+ +PE  ++ L+ Y+ GPDFPTGGII +  + I ++Y  GRG   
Sbjct: 181 PPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGII-QGVDGIRKAYETGRGRVI 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA   +EE+  G   I+VTEIPY V K++L+++I +L + K++  + + RDE+      
Sbjct: 240 LRANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ D + ++  +   +D++  +  NM  +   R P  + L   LK +LA ++E+
Sbjct: 300 IAIELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQR-PMRVGLKHYLKSYLAFQQEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R+ I++GL+ A   +D++I  IR   N       +V+ +  T+ Q 
Sbjct: 359 ITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQFTQPQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +AI+ L+L  L   +   ++ E   L++ +AE  KI   LN  + + N++      VKE 
Sbjct: 419 EAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKI---LND-QNELNRVL-----VKEF 469

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH- 544
            +     G  R T  E          +  +  E + V++S+ G+I+     S   S L  
Sbjct: 470 KAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEE 529

Query: 545 --FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQ 600
              +E D   +   A T + + + +  G     P   L   +    GE I   I L  ++
Sbjct: 530 NGLREDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDE 589

Query: 601 DIVTAFVYDS 610
           +I+ A ++++
Sbjct: 590 EIIKALIFEN 599


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/517 (36%), Positives = 305/517 (58%), Gaps = 33/517 (6%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ISN+      E V  +++   ++  +L Y++S I  RA+PD+RDG KP  RRI+ AM ++
Sbjct: 12  ISNTPLFAANEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDL 71

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L      +K A+I G+  G  HPHG+  +Y +LV +AQP+  R  LI GQGNFG+I+GD
Sbjct: 72  SLYPNRQHRKCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGD 131

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEARMT +   ++  +++D VDF   Y+E   EP VFP+ FPNLL NG +GIA
Sbjct: 132 PPAAMRYTEARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIA 191

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+ +   A ID+P I++ +L++YI GPDFPTG ++    E I + + 
Sbjct: 192 VGMATNMAPHNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVC-GLEGIKKYFA 250

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++R +  VE++  G   IV++ +P+ V  ++L E+IAEL+  K I  +  +R+E
Sbjct: 251 TGRGQIKMRGKVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNE 310

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S E+ RIV+  K R   P +++ +++  + +E+ F +N   +  GR P+ + L  ++  +
Sbjct: 311 SDENTRIVIELK-RDASPKVVINNLYNHTSLESSFAVNALAIDHGR-PKTLGLKDLINAY 368

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS-- 419
           + HRREV+ RR+ F ++  + R E L+G LIA  N+DE I IIR   N ++ +  +++  
Sbjct: 369 IEHRREVIMRRTRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFD 428

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 R++ +E Q +AIL+LRL  L  LE  ++++E   L+  
Sbjct: 429 FNRQQVEQIGILIRDEARLTNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIER 488

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
            + +  +L    +    I  E+RE+KE ++  + TDL
Sbjct: 489 IKDLLDILAKESRVLEIIKAELREIKEKYATPRMTDL 525


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/460 (41%), Positives = 285/460 (61%), Gaps = 9/460 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM Q A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIV-GRSGIREAYESGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +LK W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLFRHTPLQDNFTINNVALVNGR-PHTMGLKEMLKVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L + Q
Sbjct: 373 VIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLDDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              IL+LRLR L K+   ++++E D+L    E+++ +L S
Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILAS 472


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/534 (37%), Positives = 307/534 (57%), Gaps = 23/534 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL      
Sbjct: 13  IAERIIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYMMADMGLRPDRGH 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            K +R+VGEV+GKLHPHGD ++YD+LVRLAQ F  R PL+ G GNFG++D D  AA RYT
Sbjct: 73  VKCSRVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGSLD-DGPAAARYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+   ++P V P+  P LL NG SGIAVGMAT++ 
Sbjct: 132 EARLAASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGASGIAVGMATNLA 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+ +P+ +++ L+ ++ GPD PTGG IV   + I E+Y  GRG FR 
Sbjct: 192 PHNLVEVISAARHLLAHPDATLDDLMRHVPGPDLPTGGRIV-GLDGIREAYETGRGSFRT 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           RA   +  V      IV+TE+PY V   ++IEKI E +  K++  + ++ D  +    ++
Sbjct: 251 RATAQITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISNVTDLTDREHGLK 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DPD ++E+++  + +E  F +N   L  G+ P+ + L  +++ W+ HR  
Sbjct: 311 LVIEVKT-GFDPDAVLEALYRYTPLEESFGINNVALVDGQ-PRTLGLRDMIQVWVNHRIS 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS +R++    R  +++GLL A L+IDE+I +IR  D     +  ++  F L+E Q
Sbjct: 369 VIRRRSEYRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTRLMDVFDLSEVQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL LRLR L K    +++ E D+L A+  ++  +L   +     ++ E+ +V     
Sbjct: 429 ADYILELRLRRLTKFSRLELEKERDDLAAQIAELTEILGDERVLHRLVSQEMADVARAHG 488

Query: 488 KS------TDLGRRRTTFCEV-----SRADKATLQQAMIEKEPITVVISNRGWI 530
                   T  G   T+  +      +  D A+LQ   I   P TVV+S+ G +
Sbjct: 489 TPRRTVLVTSDGSVSTSSAQPAPRRGAPVDPASLQ---IADAPCTVVLSSTGLL 539


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/494 (40%), Positives = 304/494 (61%), Gaps = 14/494 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 15  ERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEMGLRPDRGHVK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++YD++VR+AQPF  R PLI G GNFG++D D  AA RYTEA
Sbjct: 75  SARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGSLD-DGPAAPRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG SGIAVGMAT++  H
Sbjct: 134 RLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASGIAVGMATNMVPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LID+P+ +++ L+ ++ GPD PTGG I+     + ++Y  GRG F+ RA
Sbjct: 194 NLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTII-GLSGVKDAYLTGRGSFKTRA 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
           R  VE +      +VVTE+PY V   ++IEKI + +  K++  + ++ D  +    +R+V
Sbjct: 253 RVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTDLTDRTHGLRLV 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K    +P+ ++E ++  + +E  F +N NV  +   PQ + L  +L+ ++AHR +V+
Sbjct: 313 IEIKT-GFNPEAVLEQLYRYTPLEDGFSIN-NVALVDGSPQTLGLKELLQVYVAHRLDVV 370

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D   + +  ++  F L+  Q D
Sbjct: 371 TRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLMDVFDLSTLQAD 430

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L +    +++ E D L AE  +++++L   ++    ++ E++EV + F   
Sbjct: 431 YILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVSTELQEVADRFGTP 490

Query: 490 TDLGRRRTTFCEVS 503
                RRT   E +
Sbjct: 491 -----RRTLLTEAA 499


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 357/625 (57%), Gaps = 39/625 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 19  LRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLSSDRPYRKCARVVGE 78

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA- 140
           V+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +A 
Sbjct: 79  VLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSDPPAAMRYTESRLQPLAT 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ ++ + VDF D ++    EP V P++ P+LL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 139 ESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATNIPPHNLGELI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A LA+I +PEIS   L+  + GPDFPTGG I+  R+ I E+Y  GRG   +R    +E 
Sbjct: 199 DALLAIIADPEISDSALITIVTGPDFPTGGQIL-GRKGIREAYTTGRGSVTMRGVASIET 257

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++   
Sbjct: 258 IEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISDIRDESDRDGMRIVAEL 317

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ ++F L+ +++ F  ++  L  G  P ++ L  +L  +L  R E + RR+
Sbjct: 318 RRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGE-PVLLTLRQMLHVFLDFRIETIERRT 376

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------LTENQVDA 430
            + ++  + R   L GLL+A   +D II +IR          +R+       L+E Q DA
Sbjct: 377 RYLLRKAEERDHTLLGLLLALDQLDPIINLIR---AASDAATARYQLQYFHGLSEIQADA 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL ++LR L  LE  +I+ E ++L+ +      +L    +    I  E++ +   ++   
Sbjct: 434 ILQMQLRRLTALEADKIRFEHEDLVQKVNNYRDILAHRDRVLELIKEELKLLHNRYNSP- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS-------A 542
               RRT   ++    + +L+   +I  E   V+++  G+++ +     + +       A
Sbjct: 493 ----RRTKILDL----EGSLEDIDLIANERSVVLLTENGYLKRMPVSEFEATNRGTRGKA 544

Query: 543 LHFKEGD-SLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHN 599
               +GD  +K+ +  +  D +LL S  G +Y LPA  + +S R   G  +  ++ +   
Sbjct: 545 GTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQILPIPRE 604

Query: 600 QDIVTAF---VYDSTCKLLVVSSKG 621
           ++I +      +++  +LL++++ G
Sbjct: 605 EEITSLLSVSAFENEVQLLMLTNSG 629


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/615 (32%), Positives = 347/615 (56%), Gaps = 30/615 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F   FK
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPFK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++ L+LQ +D++ V     +++ + EP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 124 SRLSKISNLLLQDIDKNTVKMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + L+ +PE S+E L++++ GPDFPTG +I+ ++  I E+Y+ GRG  +VR
Sbjct: 184 HNLAEVIDATIYLLKHPEASLEDLMQFVKGPDFPTGAVIMGTK-GIKEAYQTGRGRIQVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++
Sbjct: 243 AKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++ D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+ 
Sbjct: 303 IELKKNADAENILNYLFKNTDLQVSYNFNMVAIDH-MTPVQVGLKRILSSYLEHDEDVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           +R+ + +   + R+EI++GL+ A   +D++I  IR   N+   K  ++  F  TE Q +A
Sbjct: 362 KRTKYDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKEFKFTERQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACEIREVK 483
           I++L+L  L         +++D L+AE+  ++        LL+       +I  E+  VK
Sbjct: 422 IVSLQLYRL-------TNTDVDALIAEQNDLNKKVAVYQKLLSDRATLEKEIIKELTAVK 474

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDL 540
           + F+       RRT     S A     ++A++  E + V++S  G+++  SL+S+ S D 
Sbjct: 475 KNFASP-----RRTQISHES-AKVEIDEKALVADEQVRVLVSRDGYLKRSSLRSYQSSDE 528

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNH 598
           +     E D +       T D + L +  G     P   L   +    G+ +   + L  
Sbjct: 529 ADNGLPENDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTETKWKETGQHLSQEVGLAT 588

Query: 599 NQDIVTAFVYDSTCK 613
           ++ I+  F +D   K
Sbjct: 589 DEQIIRVFDFDKLDK 603


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 236/705 (33%), Positives = 373/705 (52%), Gaps = 74/705 (10%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           +HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+
Sbjct: 1   MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ V+F   Y+  ++EP + P++ 
Sbjct: 61  DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           PNLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT GII
Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELII 291
                 + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+ 
Sbjct: 181 Y-GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVT 239

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L  G+ 
Sbjct: 240 EKRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ- 298

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+   
Sbjct: 299 PRLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAP 358

Query: 412 KPKPV-----------------MVSR----------------------------FSLTEN 426
            P P+                 M+SR                            + L++ 
Sbjct: 359 TP-PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDT 417

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   IL +RL+ L  LE+ +I  E   ++A+   I  LL+   +     A  + E+  I 
Sbjct: 418 QAQEILQMRLQRLTGLEQDKIVQEYREVMAQ---IADLLDILARPERITAIIVEELTLIR 474

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
           S   + G  R +  E +  +  T  + +I  + + V +S+ G++        R+ K    
Sbjct: 475 S---EFGDERRSQIEHNATELDT--EDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGR 529

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
              A   KE D +     A+T D IL  S  G+ Y L    +  G     G  I  +  L
Sbjct: 530 GKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPL 589

Query: 597 NHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  +    I+    +D    + + +SKG       +E  +N RK         E    + 
Sbjct: 590 SPGEKINVILPVKQFDEQHFVFMATSKGTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIG 648

Query: 654 VKVT-GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             +T G H V +  +  K + F  + +  M R  +GVR  + ++G
Sbjct: 649 ADITDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEG 693


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 333/572 (58%), Gaps = 16/572 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314
             +E +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  E +RI + 
Sbjct: 242 TEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K +  D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  
Sbjct: 302 LK-KDADEQTILNYLFKYTDLQINYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVA 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI
Sbjct: 360 RSKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFSEEQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E   L      +++++   +  +N +  E+REVK+ F     
Sbjct: 420 VTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKF----- 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
            G  R +  +           ++I +E   V ++  G+I+     S + S    L  ++ 
Sbjct: 475 -GNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           D +    +A TT  +L+ +  G     P   L
Sbjct: 534 DDVIFIQNAKTTQELLIFTNLGNVIYRPIHEL 565


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/607 (32%), Positives = 345/607 (56%), Gaps = 17/607 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +LQ +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S++KL+E++ GPDFPTGGII +  E I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGGII-QGAEEIKKAYETGKGRVIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E +  G   IVVTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 302 LKKDADAQNVLNYLLKYTDLQVNYNFNMVAID-NYTPRQVGLIKILSSYIAHRKNIIVKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SQFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASDNKSDAKENLKLSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++ +    +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGNEATMFNVMKRELREVKKKFANA--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549
            RR     E    +  T   ++I +E   V ++  G+++     S + S++     ++ D
Sbjct: 478 -RRSELQVEAETIEINT--ASLIVEEETFVSVTRSGYLKRTSPRSFNASSIDEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L   R    GE + Q + +   +++++   
Sbjct: 535 QLVFVEAAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDTGEHLSQTITNYGTDEEVLHVE 594

Query: 607 VYDSTCK 613
           + D   K
Sbjct: 595 IVDQFTK 601


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 353/602 (58%), Gaps = 20/602 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM + G  F  AF+K
Sbjct: 6   QRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEKAFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R PL+   GN G+IDGD AAA RYTEA
Sbjct: 66  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++ L+L+ +D++ VDF   +++  +EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A +  +++ +  ++ LL +I GPDFPTG II +  + I ++Y  G+G   VR+
Sbjct: 186 NLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAII-QGIQEIKKAYATGKGRIIVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E +  G   IVVTEIPY+V K+ L++KI +L I K+I  + ++RDE+  + +RIV+
Sbjct: 245 KAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + +  ++++  +F  +D++  + +NM  +   R P +M L  ++  ++ H++EV+ 
Sbjct: 305 ELK-KDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKR-PVLMGLMDLIDAYIQHQKEVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVD 429
            RS++ ++    R  I++GL+     +DE++ +IR      D  K +MV+ F  +E Q +
Sbjct: 363 NRSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMVA-FEFSERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++  +L+S  +    I  E+++V++ F   
Sbjct: 422 AIVMLQLYRLTNTDVTALQQENEELSKTILELTEILSSETKLLKVIQTELKQVRKDFKTE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH-FK 546
                RR+   E  +  K   +  MI KE + V ++  G+++  S++S++   S +   K
Sbjct: 482 -----RRSQIEEQIQEIKID-ETDMITKEDVIVAVTKDGYVKRTSIRSYNATKSEMPVMK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD L   L   T   +L+ +  G    LP   L     +  G+ +  L+ ++  + ++ 
Sbjct: 536 DGDELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVTIDSEEKVIA 595

Query: 605 AF 606
            F
Sbjct: 596 VF 597


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 342/604 (56%), Gaps = 16/604 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAAEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P +++++L+  + GPDFPTGGII +  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPNVTVDELMTVMKGPDFPTGGII-QGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +  NM  +   R P +M L  +L  ++AH++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNFNMIAIH-NRRPTMMTLPLLLDAYIAHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K   ++   +F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RR+   +     K TL   ++  E + V ++  G+I+  S +SH+  +      K+ 
Sbjct: 481 ---RRSKIEQEIEEIKITL-DVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L  +  +  G+ I  ++    ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTGEDESIIAVY 596

Query: 607 VYDS 610
            +++
Sbjct: 597 GFET 600


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/336 (49%), Positives = 241/336 (71%), Gaps = 2/336 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPH
Sbjct: 8   FLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 68  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 127

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N
Sbjct: 128 DTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN 187

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+
Sbjct: 188 KDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERIL 246

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ ++
Sbjct: 247 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 306

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  + ++T F +N+  L  G  P+V+ L   L+ +L
Sbjct: 307 YKQTALQTSFGINLLALVDGE-PKVLNLKQCLEHYL 341


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 206/598 (34%), Positives = 349/598 (58%), Gaps = 25/598 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   ++++D EP V PS+FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSAIAAELLRDINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+QE  +A L  +DN   ++++L+  I GPDFPTGGII +  + I ++Y  G+G   VR+
Sbjct: 185 NLQEALDAVLMRLDNKSCTVDELMTVIKGPDFPTGGII-QGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA-KRIPLLEDIRDESAED-VRIV 312
           R  +E++      I++TEIP++V K+ +I K+ EL +  +R+  + +IRDES  + +RIV
Sbjct: 244 RTEIEQLKGNKEQIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIV 303

Query: 313 LFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRR 369
           +      L  D+  + I  F+L   + +   N N++++  R P +M L  +L  ++ H++
Sbjct: 304 V-----ELKKDVPAQGILNFLLKSTDLQVSYNFNMIAIHNRRPMMMTLPLMLDAYIDHQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTEN 426
           E++ RRS + +   + R+ I++GL+ A   +DE+I  IR ++DK   K  ++ +F  +E 
Sbjct: 359 EIVRRRSQYDLTRAEDRLHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEKFGFSEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI++L+L  L   +  Q++ E D L     K+ ++L   K+    I  E+ ++K+ F
Sbjct: 419 QAEAIVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILEDEKKLIRVIKSELNDIKKRF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSAL 543
           +    L R  T   E+    K T +  ++  E + V ++  G+++  SL+SHS  +    
Sbjct: 479 T----LPRLSTIEAEIEEI-KVT-RDVLVPSEEVVVTVTKDGYVKRTSLRSHSASNGKDF 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
             K+ D L    + +T   +LL +  G     P   L  +  +  G+ I  ++ ++ N
Sbjct: 533 AMKDSDYLLYEANLNTQHHLLLFTNKGHYIYQPVHELPDIRWKDLGQHISSIVPIDSN 590


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 218/629 (34%), Positives = 347/629 (55%), Gaps = 33/629 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM + G      + K
Sbjct: 12  DRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQDQGFRPDRGYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+   D AAA RYTEA
Sbjct: 72  SARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSRGNDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +++ +D + VDF   Y+ +  EP V P++ PNLL NG+ GIAVGMAT+IP H
Sbjct: 132 RLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    +++ +     ++E + E + GPDFPT G+IV + + I ++Y  GRG  
Sbjct: 192 NLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGT-DGIADAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    +EE   G   +V+TE+PYQV    +I  IAE +   +I  +  I DES++ + 
Sbjct: 251 RMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGIAQIDDESSDRIG 310

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K  ++   +++ +++  S ++T F  NM  +  G VP+ + LD I++ ++AH+
Sbjct: 311 MRIVVTLKRDAV-ARVVLNNLYKHSQLQTNFGANMLAIVDG-VPRTLRLDQIIRLYVAHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR   + D+ +  ++    + E
Sbjct: 369 IEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARVGLMELLDVDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++L  L  LE  +I  EL  +  E      +L   ++Q    A    E+KEI
Sbjct: 429 IQARAILAMQLGRLAALERQKIFDELAEIEEEIADYKDILAKPERQR---AIVRDELKEI 485

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K  D  R R    E    D     + +I +E + V I+  G+         RS K   
Sbjct: 486 VDKHGDERRTRIIAAEGDVRD-----EDLIAQEDVVVTITETGYAKRTKTELYRSQKRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
             +     K+ D +       T D IL  +T G+ Y + A  L  ++    G+ +  L+ 
Sbjct: 541 KGVQGAALKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPDMNRAARGQHVANLLA 600

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKG 621
           L   + I        Y+    L++ + +G
Sbjct: 601 LQTEEKIAQVIHLRTYEDAPYLVLATKRG 629


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 302/496 (60%), Gaps = 15/496 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 73  SARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP H
Sbjct: 133 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  
Sbjct: 193 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V 
Sbjct: 252 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 311

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIV+  K  ++   +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H+
Sbjct: 312 LRIVIEIKRDAV-AKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQ 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + E
Sbjct: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+    EI
Sbjct: 430 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 486

Query: 486 FSKSTDLGRRRTTFCE 501
             +  D  R R    E
Sbjct: 487 VDRHGDDRRTRIIAAE 502


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 308/505 (60%), Gaps = 17/505 (3%)

Query: 7   SNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           S +NT  +E    ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSE
Sbjct: 4   STTNTTPDEPAERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSE 63

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL       KSAR+ GEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D 
Sbjct: 64  MGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGSLD- 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG SGI
Sbjct: 123 DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  AA  LID+P+ S++ L+ ++ GPD PTGG I+     + ++Y
Sbjct: 183 AVGMATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTII-GLSGVKDAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG F+ RAR  VE +      +VVTE+PY V   ++IEKI + +  K++  + ++ D
Sbjct: 242 LTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTD 301

Query: 304 --ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             +    +R+V+  K    +P+ ++E ++  + +E  F +N NV  +   PQ + L  +L
Sbjct: 302 LTDRTHGLRLVIEIKT-GFNPEAVLEQLYRYTPLEDGFSVN-NVALVDGSPQTLGLKELL 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMV 418
           + ++AHR EV+ RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D   + +  ++
Sbjct: 360 QVYVAHRLEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F L+  Q D IL LRLR L +    +++ E D L AE  +++++L   ++    ++ E
Sbjct: 420 DVFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVSTE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVS 503
           ++EV + F        RRT   E +
Sbjct: 480 LQEVADRFGTP-----RRTLLTEAA 499


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 214/705 (30%), Positives = 388/705 (55%), Gaps = 46/705 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAH-MTPVQVGLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEFGSD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFK 546
               RR     E +R +    ++A+I +E + V+IS  G+I+  S++S  S +       
Sbjct: 482 ----RRSEISDETARVE--VDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+  +    G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKVSSEEKMKLV 653
            F      D     L+ ++ G  FI + +  +A+ +  +T+       +K+  E+   + 
Sbjct: 596 VFALEALDDPDLAFLLATNDG--FIKQVA--LADLQPTRTYKSRAIMAMKMKGEDSRVIT 651

Query: 654 VKVTGDHVAVVGENRKLLIFS---------IDQIPEM-SRGKGVR 688
           V      +A   E R++++F+         ID++P++ +R  GV+
Sbjct: 652 VD-----LAKTSEKREIILFTNQAFALKYDIDEVPQVGARAAGVK 691


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 218/681 (32%), Positives = 384/681 (56%), Gaps = 31/681 (4%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD RDG KPV RRI++AM   G  +  A++KSA+ VG VIG  HPHGD 
Sbjct: 29  YAKYIIQERALPDARDGLKPVQRRILYAMYHDGNTWDYAYRKSAKTVGLVIGNYHPHGDT 88

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           SVYD++VR++Q +  R PLI   GN G+ID D AAA RYTEAR+ +V +++ + +D++ V
Sbjct: 89  SVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDDPAAAMRYTEARLAKVTQVMEEDLDKNTV 148

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           +    +++ + EP V P  FP +L NG +GIA G AT++P HN+ E+ +A +  I NPE 
Sbjct: 149 EMAPNFDDTEHEPTVLPVPFPVMLVNGATGIAAGYATNMPPHNLNEVVDATIYRIQNPES 208

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           ++  +++ + GPDFPTGG IV+    I +++  G+G   VR++  + E  +    I++TE
Sbjct: 209 ALTDVMDILTGPDFPTGG-IVQGEAGIRDAFTTGKGRIVVRSKCEIHE-EKSCQQIIITE 266

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFM 331
           IPY+V K +L++K+ E+ ++K I  + D+RDES  E +RIV+  + + +D ++++   + 
Sbjct: 267 IPYEVVKGQLVKKMDEIRVSKDIDGILDVRDESDREGLRIVVDVR-KDIDANMILNYFYK 325

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D++  +  N NV  + + P  + L G+L  ++A R+EV+ RRS + +  ++ R  I++
Sbjct: 326 NTDLQVYYNYN-NVAIIDKRPVQVGLLGLLDAFIAFRKEVVLRRSRYELDKMEARCHIIE 384

Query: 392 GLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GL+ A   +DE+I IIR ++DK   K  +++ F   E Q +AI++LRL  L   +   ++
Sbjct: 385 GLMKAVSILDEVIRIIRASQDKGDAKRNLMNEFGFDEPQSEAIVSLRLYRLSNTDIITLR 444

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E   L+ + E+  +++ +     + I  E+R VK+ +      G+ R T  E    +  
Sbjct: 445 EEFAELVNQIEETKAIIENENVLHSVIIKELRNVKKEY------GQERRTRIEAEVEEIN 498

Query: 509 TLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGDSLKIALHAHTTDRILL 565
             + AMI  E + V +S  G+++  S++S+ +V       K+GD L       T D +LL
Sbjct: 499 YDKTAMIANERVVVTVSRDGYLKRVSMRSYNAVGDQETSIKDGDVLIGTTECDTLDTLLL 558

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ++ G   ++P   +  G+     + L  ++ ++    I  A +   +D+   ++ VSS 
Sbjct: 559 FTSKGNYASIPVWQIDEGKWKDVGMHLNKVVRIDGEDKIKNAILIKSFDTYAWIVTVSSA 618

Query: 621 GNAFIVEESEI----IANTRKGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSI 675
           G    ++++ +    +    K  T + +S + +M    +      + +V ++     F+I
Sbjct: 619 GQ---IKKTPVNNWQVERNNKVMTAMNLSKDAEMIHAFIAYRNQQILMVSKDGYSYRFAI 675

Query: 676 DQIPEMS-RGKGVRLQSYKDG 695
           + IP    + KGV+  +   G
Sbjct: 676 EDIPATGVKSKGVKAMNLGKG 696


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 233/742 (31%), Positives = 404/742 (54%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      F+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  S++ LL  I GPDFPTGGII +  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGII-QGLDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I+ GL+ A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S +
Sbjct: 420 AIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSDN 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAVIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ ++ 
Sbjct: 534 EGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF+ +++ P   R  GV+  + K+    D +             +GR
Sbjct: 654 SDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKE---DDYVA------------SGR 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
           + N SE D L  + +RG V  L
Sbjct: 699 ALN-SEKDQLILVTQRGAVKRL 719


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 205/519 (39%), Positives = 308/519 (59%), Gaps = 34/519 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  +  D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG-IIVESRESIVESYRLGRGG 249
           IP HN+ E+ EA +ALI  PE+S EKLLE + GPDFPTGG ++V S   + ++Y  GRG 
Sbjct: 181 IPPHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVGS--GVRDTYLQGRGS 238

Query: 250 FRVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             +R    +EEV  G+G      +V+TE+PYQ+ K+  IEK+A+ +   +I  + DIRDE
Sbjct: 239 IPMRGIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDE 298

Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN------VLSMGRVPQVMPL 357
           S  E +R+V+  +  +       E+  +L+D++ R  L  N       L  G+ PQ + L
Sbjct: 299 SDREGMRVVIELRRDT-------EASKVLTDLQRRTSLQSNFGAILLALVNGQ-PQQLSL 350

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK 414
             +L  +L +R   L RR+S  ++  + R+E+++GL+ A   + E+I  I+   +    +
Sbjct: 351 RQLLNHFLEYREHTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVIERIQAASDAASAR 410

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +   F L+E Q DA+L + LR L  LE+  ++ E   L+ E+E++  LL+        
Sbjct: 411 ASLQVHFDLSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERERLRHLLDDRAALLES 470

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  E++ +K+ +S       RRT    V+  D    Q+A
Sbjct: 471 MVAELKALKKRYSTP-----RRTRL--VAGGDDLVAQRA 502


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 202/491 (41%), Positives = 289/491 (58%), Gaps = 16/491 (3%)

Query: 20  VSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           V L  + E R  +L YA S I  RA+PD RDG KPV RRI+  M  MGL       KS+R
Sbjct: 18  VDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSSR 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  AA RYTEAR+ 
Sbjct: 78  VVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARLA 136

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A  +   +DED VDF   Y+   +EP V P+ FPNLL NG +GIAVGMAT++P HN+ 
Sbjct: 137 ASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNLV 196

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I E+YR GRG F  RA   
Sbjct: 197 EVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIREAYRTGRGKFLTRATAH 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFP 315
           VE V      IVVTE+PY V   ++I +I E + +K++  + D+ D  +     R+V+  
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTDRKHGTRLVISV 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           KN   +P+ ++  ++  + +E  F +N NV  +   P  + L  +L+ ++ HR  V+ RR
Sbjct: 316 KN-GYNPEAVLAQLYKHTPLEDSFGIN-NVSLVDGQPHTLGLRELLEVFVRHRLTVVTRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + FR+     R  ++ GLLIA L+IDE+IA+IR+ D        ++  F LTE Q   IL
Sbjct: 374 TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQVFDLTEPQAGYIL 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L K    +++ E D L  E E ++++L         ++ E+  V E F      
Sbjct: 434 ELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVSRELAAVAEQFGTP--- 490

Query: 493 GRRRTTFCEVS 503
             RRT   E S
Sbjct: 491 --RRTVLLEAS 499


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 209/603 (34%), Positives = 326/603 (54%), Gaps = 53/603 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L   L E ++ YA+STI  RA+PD RDG KPVHRRI+ AM E+ L  G  ++K AR+V
Sbjct: 67  IELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRELNLTPGTPYRKCARVV 126

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD SVYD+LVR+AQ FV    L+ G GNFG++D D  AA RYTE ++T+ 
Sbjct: 127 GEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDADPPAAMRYTECKLTKF 186

Query: 140 A-ELILQGVDED------------AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A E +L G D              +V+F D ++  + EP V P++ P LL NG +GIAVG
Sbjct: 187 AYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPARVPVLLVNGAAGIAVG 246

Query: 187 MATSIPSHNVQEICEAALAL----IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           MATSIP HN+ E+C+AAL +        + S ++L   +  PDFPTGG+I+ +   +  +
Sbjct: 247 MATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFPTGGLIMGT-TGVARA 305

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G   +RA+   E+V  G   IV TE+PYQV KS L+ K A+ I A+RI  + D+R
Sbjct: 306 YATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTADAINARRIEGIADLR 365

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
           DES  +   V+F   R    ++++ ++F  + ++T FP N+  +           R P  
Sbjct: 366 DESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDHALNDDGDDVRSPVR 425

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           M L   L+ WL+ R + +  R++   +    R+ I++GL +A  N+D ++A+IR  D P 
Sbjct: 426 MTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANVDAVVALIRASDAPA 485

Query: 415 ------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                       P M    +L+E+Q  A+L L L  L  LE  ++ SE  +L  + E + 
Sbjct: 486 DAKAKLVEGGAIPAM---GALSEDQASAVLALTLSRLTTLEADKLDSERKDLEVKLEGLR 542

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L++     ++ +  E+  +K+ +        RR+    V   D     + +IE     V
Sbjct: 543 KLMSEDAAVYDAVVDEVAAIKKAYPTP-----RRSEI--VFDGDAELRDEDVIENARSAV 595

Query: 523 VISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +++  G+++        + S      +  +G +L+  +  H  D +L ++  G AY + A
Sbjct: 596 LVARDGYVKRTSLEEFGAQSRGGRGRNALQGGTLRHLVTCHDHDTLLCIADTGVAYGVRA 655

Query: 578 GNL 580
            N+
Sbjct: 656 FNV 658


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 235/325 (72%), Gaps = 2/325 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           + ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPL 357
           + ++T F +N+  L  G+ P+V+ L
Sbjct: 300 TALQTSFGINLLALVDGQ-PKVLSL 323


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 235/703 (33%), Positives = 385/703 (54%), Gaps = 43/703 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGE
Sbjct: 20  LRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-A 140
           V+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R+  +  
Sbjct: 80  VLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRLKALTT 139

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ 
Sbjct: 140 DSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHNLGELI 199

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
              LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R    +E 
Sbjct: 200 AGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRGVAAIET 258

Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +   GR     +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D   ++   
Sbjct: 259 LEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRIVVEL 318

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ +++ L+ +++ F  +M  L  G  P ++ L  +L+ +L  R E + RR+
Sbjct: 319 RRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGE-PILLTLRKMLEVFLDFRVETIERRT 377

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L++ Q DAIL 
Sbjct: 378 RYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSDVQADAILQ 437

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +      
Sbjct: 438 MQLRRLTALEADKIRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLRDRHAIP---- 493

Query: 494 RRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG-- 548
            RRT   ++    D   L    I  E   V+++  G+++ +     + ++     K G  
Sbjct: 494 -RRTEILDLGGGLDDIDL----IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTR 548

Query: 549 ----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
               +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+ +   + I
Sbjct: 549 SQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMI 608

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKV 656
            +      ++    LL+++  G  FI        +  +    + +  EE   L    + V
Sbjct: 609 TSLLAVSEFNDDTDLLMLTQGG--FIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAV 666

Query: 657 TGDHVAVVGENRKLLI---FSIDQIPEMSR-GKGVRLQSYKDG 695
            GD V ++G    + I    S D++  + R  +GVR  + +DG
Sbjct: 667 PGDSV-LIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDG 708


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 213/705 (30%), Positives = 389/705 (55%), Gaps = 46/705 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAH-MTPVQVGLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L ++    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEKILADPKVLQKEIIKELRAVKKEFGSD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFK 546
               RR     E +R +    ++A+I +E + V+IS  G+I+  S++S  S +       
Sbjct: 482 ----RRSEISDETARVE--VDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+  +    G+ +   + L  ++ I+ 
Sbjct: 536 ETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            F      D     L+ ++ G  FI + +  +A+ +  +T+     + +  + +K+ G+ 
Sbjct: 596 VFALEALDDPNLAFLLATNDG--FIKQVA--LADLQPTRTY-----KSRAIMAMKMKGED 646

Query: 661 VAVV-------GENRKLLIFS---------IDQIPEM-SRGKGVR 688
             V+        E R++ +F+         ID++P++ +R  GV+
Sbjct: 647 SRVITVDLVKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVK 691


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 191/460 (41%), Positives = 285/460 (61%), Gaps = 9/460 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM + A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIV-GRSGIREAYESGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +LK W+ HRR 
Sbjct: 315 LVIEIKT-GFDPNAVLAQLFRHTPLQDNFTINNVALVNGR-PHTMGLKEMLKVWVDHRRV 372

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L + Q
Sbjct: 373 VIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLDDIQ 432

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              IL+LRLR L K+   ++++E D+L    E+++ +L S
Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILAS 472


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  F  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  F  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 199/493 (40%), Positives = 298/493 (60%), Gaps = 14/493 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   +++ +L YA S I  RA+PD RDG KPV RRI++ M++MGL       
Sbjct: 11  DERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQMADMGLRPDRGHV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D D  AA RYTE
Sbjct: 71  KSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSLD-DGPAAPRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+   A ++  G+DED VDF   Y+ + ++P V PS  PNLL NG SGIAVGMAT++P 
Sbjct: 130 ARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGASGIAVGMATNMPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  AA  LI +P+  +E L+ ++ GPD P GG IV   + + ++Y  GRG FR R
Sbjct: 190 HNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIV-GLDGVRDAYVSGRGSFRTR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A   VE +      IVVTE+PY V   R+ EKIAE + +K++  +  ++D  +    +R+
Sbjct: 249 ATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQDLTDRQHGLRL 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K+   +P+ ++E ++  + +E  F +N NV  +G  P+ M L  +L  ++ HR  V
Sbjct: 309 VIEVKS-GFNPEAVLEQLYRATPLEESFGIN-NVALVGGQPRTMGLRELLTVYVEHRLVV 366

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
             RRS +R++    R+ +++GLLIA  +IDE+IA+IR+ D   + +  +V+ F L+  Q 
Sbjct: 367 TRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLVAVFDLSTPQA 426

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL L+LR L K    ++ SE D L  E  ++  LL    +    ++ E+ +V      
Sbjct: 427 DYILELQLRRLTKFSRIELTSERDELQREIAELTELLGDPARLRALVSDELAQVANQHGT 486

Query: 489 STDLGRRRTTFCE 501
                 RRT   E
Sbjct: 487 P-----RRTVLLE 494


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 199/622 (31%), Positives = 350/622 (56%), Gaps = 26/622 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V+EN+  V     + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     
Sbjct: 16  IVQENLDTV-----VADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RY
Sbjct: 71  FKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A+ ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +
Sbjct: 131 TEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEM 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+A I NP I + K+ + I GPDFPTGG+I  + + I E++  G+G   
Sbjct: 191 PPHNLNEILDAAIAKIKNPAIELSKIAKIIQGPDFPTGGVIYGT-DGIHEAFERGKGRIT 249

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           + +R+ V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   
Sbjct: 250 LASRYNVYSDNKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGIN 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L   +++++ ++++  +F+ + M   +  N NV+     P+ M +  +L  +L H ++V
Sbjct: 309 ILITLDKNVNENVIVNYLFLKTQMRIYYNYN-NVVIDNHTPKTMGISALLDAYLKHVKDV 367

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQ 427
             +   F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ
Sbjct: 368 KVKTIEFDLIKYKTRLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L K +E+    E   L  + ++ + LL +  +  N +    R++K  F 
Sbjct: 428 ATAIAELRLYKLSKTDEHTFILEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKF- 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALH 544
                GR R T  E+ + + +  Q+ +++ E + + IS  G+I+ +   + +   ++   
Sbjct: 487 -----GRIRRTSIEIEQINSSVNQEDLVKDEEVFLGISKFGYIKKVSKKTYESNLITTYG 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDI 602
            KE D++     A + D++LL +  G    LP   +   +     I L   +DL+  ++I
Sbjct: 542 IKEDDNILFYDLASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEI 601

Query: 603 VTAFV---YDSTCKLLVVSSKG 621
           V+      +D T  + + + KG
Sbjct: 602 VSVIKVSDFDVTNYVCMFTKKG 623


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/455 (41%), Positives = 288/455 (63%), Gaps = 13/455 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     F+
Sbjct: 3   KKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPFR 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTE 122

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A    L+ +  + V F + ++   +EP V P++ P LL NG+SGIAVGMAT+IP
Sbjct: 123 TRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI ++ +AL+ N +IS +KL + I GPDFPTGG ++ S  +I E Y  G+G   +
Sbjct: 183 PHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHS-AAIEELYETGKGSLTI 241

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EEV  G+G      +++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES  
Sbjct: 242 RGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDESDR 301

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           D +RIV+  K  S + +L++ +++  + ++T F      L  G+ P  + L   L  +L 
Sbjct: 302 DGMRIVIELKKDS-NSELVISNLYKKTTLQTNFGAIFLALIKGK-PVQLSLKKYLNFFLE 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423
            R E + +R+ + ++    ++EIL+GL  A  NI +++AII    N  + K  ++  F L
Sbjct: 360 FREETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIKNFFL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +E Q  ++L++ LR L  LE+ QI +E+ NL  +K
Sbjct: 420 SEKQASSVLDMPLRKLTNLEKNQIDNEIINLEEKK 454


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 195/500 (39%), Positives = 303/500 (60%), Gaps = 18/500 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  + E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLG-TGIHETYLKGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G+G      +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +RIV+  + R  +P+ ++  +   + +++ F   +  L  G+ PQ + L  +L+ +
Sbjct: 300 DREGMRIVVELR-RDANPENVLGDLHRRTSLQSNFGAILLALVNGQ-PQQLSLRKLLQTF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRF 421
           L +R   + RR++  ++    R+E+++GL+ A   +  +IA+I+        +  ++ + 
Sbjct: 358 LEYRELTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R+
Sbjct: 418 DLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQ 477

Query: 482 VKEIFSKSTDLGRRRTTFCE 501
           +K+ F+       RRT   E
Sbjct: 478 LKKRFNNP-----RRTRLVE 492


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 246/754 (32%), Positives = 402/754 (53%), Gaps = 67/754 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 75  YHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARLAKITQEAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP+HN+ E+ +   
Sbjct: 135 ADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATSIPTHNLGEVVDGVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N EI+  +L++YI GPDFPTGGI+V +++ + E Y  G G  ++R +  VE++  G
Sbjct: 195 AYMKNEEITTRQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGTGKIKIRGKVEVEDMKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+  K+   + DI ++S+ E +RIV+  K +  
Sbjct: 254 KKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGIRIVIDLK-KGA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + ++  R+    +
Sbjct: 313 DVENLTNMLYKKTRLEDTFGVNMLAVADGR-PETMGLKRIIEAHVDFQFDMATRKYKTLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
           +    + EI +GL+ A   ID II I+R     K                       M  
Sbjct: 372 KKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETENIKFKSSISKKMAG 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   ++ E +  LA+ EK + +LN+       I  ++
Sbjct: 432 MLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKYEDILNNYDSMAAVIMEDL 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +K+ F++     +RRT    V  A++A  ++  +E++ +  ++   G+     + +VD
Sbjct: 492 DRIKKEFAR-----KRRTV---VENAEEAVFEEKKVEEQEVVFLMDRFGY-----AKTVD 538

Query: 540 LSALH-FKEG--DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           +S     KE   +  K  LH   T +I + + DGK + +   ++  G  R  G+ I  + 
Sbjct: 539 VSTYERNKEAADNENKYILHCMNTGKICIFTKDGKMHQVKVMDIPYGKFRDKGQPIDNIS 598

Query: 595 DLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EK 649
           + +  Q+ +  ++ DS      KLL  + +G    VE +E    T++  T  K+  E E 
Sbjct: 599 NYDSTQEEI-VYICDSEQMRYAKLLFATKQGMIKKVEGTEFQV-TKRTITATKLQPEDEV 656

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKI 705
           +K+ V     H+ +   +   L F   ++ E  +G    +G+RL+  KD  ++DV  F+ 
Sbjct: 657 VKIQVVTENQHIVLQTTDGFFLRFPAAEVTEKKKGAIGVRGIRLK--KDDALTDVYLFE- 713

Query: 706 CEGLTWIDSAGRSYNRSENDLLGW-LGKRGGVGS 738
            EG         SY+  E  L    L KR G G+
Sbjct: 714 -EGT----ECKISYHEKEVTLNRLKLAKRDGTGT 742


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 233/742 (31%), Positives = 403/742 (54%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      F+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  S++ LL  I GPDFPTGGII +  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGII-QGLDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I+ GL+ A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S +
Sbjct: 420 AIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSDN 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAVIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ ++ 
Sbjct: 534 EGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF+ +++ P   R  GV+  + K+    D +             +GR
Sbjct: 654 SDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKE---DDYVA------------SGR 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N SE D L  + +RG V  L
Sbjct: 699 PLN-SEKDQLILVTQRGAVKRL 719


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 234/325 (72%), Gaps = 2/325 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +  +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNHELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPL 357
           + ++T F +N+  L  G+ P+V+ L
Sbjct: 300 TALQTSFGINLLALVDGQ-PKVLSL 323


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E I + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 214/705 (30%), Positives = 387/705 (54%), Gaps = 46/705 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAH-MTPVQVGLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEFGSD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFK 546
               RR     E +R +    ++A+I +E + V+IS  G+I+  S++S  S +       
Sbjct: 482 ----RRSEISDETARVE--VDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+  +    G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-------LKVSSEEKMKLV 653
            F      D     L+ ++ G  FI + +  +A+ +  +T+       +K+  E+   + 
Sbjct: 596 VFALEALDDPDLAFLLATNDG--FIKQVA--LADLQPTRTYKSRAIMAMKMKGEDSRVIT 651

Query: 654 VKVTGDHVAVVGENRKLLIFS---------IDQIPEM-SRGKGVR 688
           V      +A   E R++ +F+         ID++P++ +R  GV+
Sbjct: 652 VD-----LAKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVK 691


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 195/500 (39%), Positives = 302/500 (60%), Gaps = 18/500 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  + E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLG-TGIHETYLKGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G+G      +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +RIV+  + R  +P+ ++  +   + +++ F   +  L  G+ PQ + L  +L+ +
Sbjct: 300 DREGMRIVVELR-RDANPENVLGDLHRRTSLQSNFGAILLALVNGQ-PQQLSLRKLLQTF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRF 421
           L +R   + RR++  +     R+E+++GL+ A   +  +IA+I+        +  ++ + 
Sbjct: 358 LEYRELTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R+
Sbjct: 418 DLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQLQFLLENRESMLEVLIQELRQ 477

Query: 482 VKEIFSKSTDLGRRRTTFCE 501
           +K+ F+       RRT   E
Sbjct: 478 LKKRFNNP-----RRTRLVE 492


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 223/709 (31%), Positives = 383/709 (54%), Gaps = 34/709 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      ++K
Sbjct: 5   QHILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI   GN G++DGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A ++L  + ++ VD+   +++   EP+V PS  PNLL NGT+GI+ G AT IP H
Sbjct: 125 RLSKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEK-LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N+ E+   A+A +   ++ I K  LEY+ GPDFPTGG ++  ++ I++++  G+G   +R
Sbjct: 185 NLTEVLNLAIARLKG-QVDIAKDALEYVTGPDFPTGGTVM-GKDGILKAFETGKGKVIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E++  G   I +TE+PY+V K+ L++K+ EL + K++  + ++RDE+      V+
Sbjct: 243 AKSEIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D + ++      +D++  +  NM V  + R P+ M +  I+  +L H  EV+ 
Sbjct: 303 IELKKEADAEGVLHFFLKHTDLQLAYNYNM-VSIVNRTPKQMGIIPIIDAYLKHVEEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430
           RR++F ++   +R EI+  L  A   +DE + +IR+   +   K  ++ RFS TE Q +A
Sbjct: 362 RRTTFELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMERFSFTERQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ++ L+L  L   +  +++ E   L  E  ++ ++L+    +   I  E+  +++ F    
Sbjct: 422 VVMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDVDATKRKLIVKELTALRDEFGDD- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSAL-HFKE 547
              RR     EV      T  + MI  E   V +S  G+++  S++S+      L   KE
Sbjct: 481 ---RRSVIESEVEELKLKT--EVMIAVEETMVFVSRDGYVKRASMRSYGASSDVLPEMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ----D 601
            D   +   A TTD +L+ +  G    +P   +     +  G+ +  L+ +   Q    D
Sbjct: 536 KDRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKWKDAGQHVANLVPIEGEQVISAD 595

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           +V+ F  D+ C  L V+  G   +V+ + +      RK K  + +  +   ++V     D
Sbjct: 596 VVSTFDTDAHC--LFVTKDG---MVKRTPLRDYDAQRKSKPLMALKLKGDDEVVFAGISD 650

Query: 660 ---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG-ISDVICF 703
               + +V E    L F  D +P +  R  GV+  + KDG  ++D   F
Sbjct: 651 GPGQLFLVSERGYGLWFKEDDVPVVGQRAAGVKAMNLKDGDLVADAFSF 699


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  F  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/492 (40%), Positives = 295/492 (59%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MGL       K
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D  AA RYTEA
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT+IP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  GRG F  RA
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYETGRGIFITRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           R  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S     +R+V
Sbjct: 245 RATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN    P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ ++ HR EV 
Sbjct: 305 VEVKN-GFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVFVDHRVEVT 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D        +++ F L+E Q +
Sbjct: 363 RRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVFDLSEAQAE 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+     S  
Sbjct: 423 FILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTP 482

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 483 -----RRTVLLE 489


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 330/568 (58%), Gaps = 16/568 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P   ++KL+E++ GPDFPTG II + ++ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
            +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  E +RI +  K +
Sbjct: 240 NLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELK-K 298

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  RS F
Sbjct: 299 DADEQTILNYLFKYTDLQINYNFNMVAID-NYTPRQVGIIPMLTSYIAHRKDIIVARSKF 357

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
             +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+ L+
Sbjct: 358 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQ 417

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L   +   +++E   L      +++++   +  +N +  E+REVK+ F      G  
Sbjct: 418 LYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKF------GNP 471

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLK 552
           R +  +           ++I +E   V ++  G+I+     S + S    L  ++ D + 
Sbjct: 472 RLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDDDDVI 531

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL 580
              +A TT  +L+ +  G     P   L
Sbjct: 532 FIQNAKTTQELLIFTNLGNVIYRPIHEL 559


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 202/491 (41%), Positives = 288/491 (58%), Gaps = 16/491 (3%)

Query: 20  VSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           V L  + E R  +L YA S I  RA+PD RDG KPV RRI+  M  MGL       KS+R
Sbjct: 18  VDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSSR 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  AA RYTEAR+ 
Sbjct: 78  VVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARLA 136

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A  +   +DE+ VDF   Y+   +EP V P+ FPNLL NG +GIAVGMAT++P HN+ 
Sbjct: 137 ASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNLV 196

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA  L+ +PE S+E L+ ++ GPD P GG+IV   + I E+YR GRG F  RA   
Sbjct: 197 EVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIV-GLDGIREAYRTGRGKFLTRATAH 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFP 315
           VE V      IVVTE+PY V   ++I +I E + +K++  + D+ D  +     R+V+  
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITDVADLTDRRHGTRLVISV 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           KN   +P+ ++  ++  + +E  F +N NV  +   P  + L  +L  ++ HR  V+ RR
Sbjct: 316 KN-GYNPEAVLAQLYKHTPLEDSFGIN-NVSLVDGQPHTLGLRELLDVFVRHRLTVVTRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432
           + FR+     R  ++ GLLIA L+IDE+IA+IR+ D        ++  F LTE Q   IL
Sbjct: 374 TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQVFDLTEPQAGYIL 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L K    +++ E D L  E E ++++L         ++ E+ +V E F      
Sbjct: 434 ELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVSRELADVAEQFGTP--- 490

Query: 493 GRRRTTFCEVS 503
             RRT   E S
Sbjct: 491 --RRTVLLEAS 499


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 329/586 (56%), Gaps = 34/586 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     ++K A
Sbjct: 20  IQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCA 79

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE R+
Sbjct: 80  RVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRL 139

Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +A E +L  +  D VDF   ++    EP V P++ P LL NG +GIAVGMAT+IP HN
Sbjct: 140 APIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALI  P++S EKL   + GPDFPTGG ++ S   + ++YRLGRG   +R  
Sbjct: 200 LGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLS-SGVRDTYRLGRGSIPMRGV 258

Query: 256 WCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             +EEV  G+G      +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES  +  
Sbjct: 259 AHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDREGM 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  + D ++  +   + +++ F   +  L  G+ P  + L  +L+E+L +R  
Sbjct: 319 RVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQ-PVQLSLRRLLQEFLDYREL 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQ 427
            L RR+   ++  + R+E+++GL+ A   + E+IA+I    +    +  +  R  L+E Q
Sbjct: 378 TLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRLDLSERQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DA+L + LR L  LE+  ++ E + L  E+ ++  LL+        +  E R +K+ + 
Sbjct: 438 ADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKKRYG 497

Query: 488 KSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISN-RGWIRSLKSHSV-- 538
                  RRT   E        RA  A     +  ++ +  + S+ R  I++ ++  +  
Sbjct: 498 TP-----RRTRLVEGGDDLVAQRAAAARPNAELQRQQALEALASDSRVLIQADRAVKIVT 552

Query: 539 --DLSALHFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTL 575
              L  LH +E   L       ++ L   +  ++L  +TDG+   L
Sbjct: 553 PQVLGRLHLEEPAPLGEHPAPAQLLLTVASQPQVLAFTTDGRVAVL 598


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 342/604 (56%), Gaps = 16/604 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAGEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P  ++++L+  + GPDFPTGGII +  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPTATVDELMTVLKGPDFPTGGII-QGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IVVTE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +  NM +    R P +M L  +L  ++ H++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNFNM-IAIHNRRPTMMTLPLLLDAYITHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K     + ++F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D+L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
              RR+   +     K TL   ++  E + V ++  G+I+  S +SH+  +      K+ 
Sbjct: 481 ---RRSRIEQEIEEIKITL-DVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L  +  +  G+ I  ++  + ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTSEDESIIAVY 596

Query: 607 VYDS 610
            +++
Sbjct: 597 GFET 600


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/688 (31%), Positives = 382/688 (55%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 214/688 (31%), Positives = 382/688 (55%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            +  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/647 (33%), Positives = 362/647 (55%), Gaps = 37/647 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++EN+  +     + +R+  Y+   I++RA+PD+RDG KPV RRI+++M E+GL +   
Sbjct: 16  IIKENLDTI-----MADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSMYELGLQWNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+ID D AAA RY
Sbjct: 71  FKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSIDDDPAAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG  GIA G AT +
Sbjct: 131 TEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAKGIASGFATEM 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG +V  ++ I E++  GRG   
Sbjct: 191 PPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGG-VVYGQQGIYEAFERGRGRIT 249

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVR 310
           + +R+   E  +  + I + EIPY V KS+L+  I +LIIAK  +  L +I+D+S  +  
Sbjct: 250 LVSRYRTFEDNKNKF-IEINEIPYGVIKSKLVHDI-DLIIAKESVSGLLEIKDQSDRNGI 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +L   ++  + ++++  +   ++M+  +  N NV      PQ + L+ +L  +L H R+
Sbjct: 308 SILITLDKKANEEVILNYLLQKTEMQIYYTYN-NVAIKNNSPQTLGLNDLLNCYLDHVRD 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTEN 426
           V  +   F +     R+EI+ G L      DE+IA+IR  +  K      +++ F  T N
Sbjct: 367 VKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQNLMNHFGFTLN 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEI 485
           Q  AI  LRL  L K ++     E + L  + + ++ LLN  K+ ++Q   E ++E+K+ 
Sbjct: 427 QATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLND-KEAFDQYLIETLQEIKKQ 485

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV-ISNRGWIRSLKS---HSVDLS 541
           F +      RRTT  E   A K +  +A + KE  T + ++  G+++ + +   +S D  
Sbjct: 486 FGRP-----RRTTITE--EAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNKVVNSNDFL 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHN 599
               KEGD +     ++T + +LL +  G    +P   +   +     + L   ++L   
Sbjct: 539 TYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLSDFVELVSG 598

Query: 600 QDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +++     VT F   +   L    ++G   +++E E+   +R  KTF
Sbjct: 599 EELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEV---SRPNKTF 642


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  F  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/492 (40%), Positives = 295/492 (59%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MGL       K
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D  AA RYTEA
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT+IP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  GRG F  RA
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYETGRGIFITRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           R  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S     +R+V
Sbjct: 245 RATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN    P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ ++ HR EV 
Sbjct: 305 VEVKN-GFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVFVDHRVEVT 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D        +++ F L+E Q +
Sbjct: 363 RRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVFDLSEAQAE 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+     S  
Sbjct: 423 FILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTP 482

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 483 -----RRTVLLE 489


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 349/621 (56%), Gaps = 23/621 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGGII +  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGII-QGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+    +RIV
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREV 371
           +  K +  D + ++  ++  SD++   P N N++++  R P +M L  IL  ++AH++EV
Sbjct: 303 VELK-KEADANGVLNFLYKNSDLQ--IPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           +  RS++ ++    R  I+ GL+ A   +DE+IA IR+ +  +     ++ ++  TE Q 
Sbjct: 360 VTNRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMEKYDFTEAQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  Q++ E + L     +++ +L + K+    I   ++++K+ ++ 
Sbjct: 420 EAIVSLQLYRLTNTDITQLRDEANELDVRIAELEDILGNEKKLLKVITNSLKKLKKTYAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
                 RR+   E     K  L + MI  E + V ++  G+I+     S   S       
Sbjct: 480 D-----RRSVIEEKIEEIKINL-EVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFGM 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D L      +TTD +LL +  G     P   L  +  +  G+ I  +I ++ ++ I 
Sbjct: 534 KDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQ 593

Query: 604 TAFV---YDSTCKLLVVSSKG 621
            A     +D T  LL  +  G
Sbjct: 594 KAIPIKEFDETSYLLFFTKGG 614


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/492 (40%), Positives = 296/492 (60%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MGL       K
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D  AA RYTEA
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  ++  +DED VDF   Y+ + ++P V P++FPNLL NG +GIAVGMAT+IP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGANGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  GRG F  RA
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYENGRGIFITRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           R  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S     +R+V
Sbjct: 245 RATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN    P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ ++ HR EV 
Sbjct: 305 VEVKN-GFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVFVDHRVEVT 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D        +++ F L+E Q +
Sbjct: 363 RRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVFDLSEAQAE 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+     S  
Sbjct: 423 FILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTP 482

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 483 -----RRTVLLE 489


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 219/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  F  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 234/758 (30%), Positives = 408/758 (53%), Gaps = 54/758 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGGII +  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGII-QGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+    +RIV
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREV 371
           +  K +  D + ++  ++  SD++   P N N++++  R P +M L  IL  ++AH++EV
Sbjct: 303 VELK-KEADANGVLNFLYKNSDLQ--IPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           +  RS++ ++    R  I+ GL+ A   +DE+IA IR+ +  +     ++ ++  TE Q 
Sbjct: 360 VTNRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMDKYDFTEAQS 419

Query: 429 DAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +AI++L+L  L   +  Q++   SELD  +AE E I   L + K+    I   ++++K+ 
Sbjct: 420 EAIVSLQLYRLTNTDITQLRDEASELDVRIAELEDI---LGNEKKLLKVITNSLKKLKKT 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542
           ++       RR+   E     K  L + MI  E + V ++  G+I+     S   S    
Sbjct: 477 YADE-----RRSVIEEKIEEIKINL-EVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKD 530

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
              K+ D L      +TTD +LL +  G     P   L  +  +  G+ I  +I ++ ++
Sbjct: 531 FGMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVS---SEEKMKL 652
            I  A     +D T  LL  +  G   +V+++E++     R  K  + ++   ++E + +
Sbjct: 591 SIQKAIPIKEFDETSYLLFFTKGG---MVKKTELLQYKAQRYSKPLVALNLKGNDELVDV 647

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
            V      + +  +N   L F  +++  +  R  GV+  + KDG   +V+  +I +    
Sbjct: 648 HVTTGQQELFIATKNGYGLWFDEEEVSVVGPRAAGVKGINLKDG--DEVVSGQIID---- 701

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                      +ND+L    +RG V  +    F ++ +
Sbjct: 702 ----------PKNDVLVLTTQRGAVKRMNLSEFDKTSR 729


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/647 (33%), Positives = 362/647 (55%), Gaps = 37/647 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++EN+  +     + +R+  Y+   I++RA+PD+RDG KPV RRI+++M E+GL +   
Sbjct: 17  IIKENLDTI-----MADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSMYELGLQWNKP 71

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+ID D AAA RY
Sbjct: 72  FKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSIDDDPAAAMRY 131

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG  GIA G AT +
Sbjct: 132 TEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAKGIASGFATEM 191

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG +V  ++ I E++  GRG   
Sbjct: 192 PPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGG-VVYGQQGIYEAFERGRGRIT 250

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVR 310
           + +R+   E  +  + I + EIPY V KS+L+  I +LIIAK  +  L +I+D+S  +  
Sbjct: 251 LVSRYRTFEDKKNKF-IEINEIPYGVIKSKLVHDI-DLIIAKESVSGLLEIKDQSDRNGI 308

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +L   ++  + ++++  +   ++M+  +  N NV      PQ + L+ +L  +L H R+
Sbjct: 309 SILITLDKKANEEVILNYLLQKTEMQIYYTYN-NVAIKNNSPQTLGLNDLLNCYLDHVRD 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTEN 426
           V  +   F +     R+EI+ G L      DE+IA+IR  +  K      +++ F  T N
Sbjct: 368 VKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQNLMNHFGFTLN 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEI 485
           Q  AI  LRL  L K ++     E + L  + + ++ LLN  K+ ++Q   E ++E+K+ 
Sbjct: 428 QATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLND-KEAFDQYLIETLQEIKKQ 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV-ISNRGWIRSLKS---HSVDLS 541
           F +      RRTT  E   A K +  +A + KE  T + ++  G+++ + +   +S D  
Sbjct: 487 FGRP-----RRTTITE--EAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNKVVNSNDFL 539

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHN 599
               KEGD +     ++T + +LL +  G    +P   +   +     + L   ++L   
Sbjct: 540 TYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLSDFVELVSG 599

Query: 600 QDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +++     VT F   +   L    ++G   +++E E+   +R  KTF
Sbjct: 600 EELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEV---SRPNKTF 643


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/327 (49%), Positives = 237/327 (72%), Gaps = 2/327 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++
Sbjct: 240 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPL 357
             + ++T F +N+  L  G+ P+V+ L
Sbjct: 300 KQTALQTSFGINLLALVDGQ-PKVLSL 325


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 215/688 (31%), Positives = 382/688 (55%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 332/569 (58%), Gaps = 27/569 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  +E+ YL YA S I  RA+PD RDG KPVHRRI+++M+E G     A+ KS+R+VG+
Sbjct: 28  LKTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMNENGYRPTHAYVKSSRVVGD 87

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM+  A 
Sbjct: 88  VMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARMSPEAM 146

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            ++  + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN+ E+  
Sbjct: 147 QLVGELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEVIA 206

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-- 259
           AA  LI +P  +++KL+E++ GPD PTGG ++   + +  +Y  GRG  R+RA       
Sbjct: 207 AARWLITHPSATLDKLMEFVPGPDLPTGGSLL-GLDEVRRAYETGRGVVRMRANCETGPL 265

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPK 316
           E  RG   I VTE+PY V   ++IEKI  E+  +KR+  + D++D  +     R+V+  K
Sbjct: 266 EGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLVIECK 325

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
              ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +L HR +V+ RR+
Sbjct: 326 V-GVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQTLGLKELLEVFLRHRYDVVTRRT 383

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            +R +  + R+ ++ GLLIA LNID++I +IR   N    K  +++RF L+E Q   IL+
Sbjct: 384 KYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGLMTRFKLSEIQATYILD 443

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
             LR L K +  +++SE + L  E  ++  +L+        ++ E+ ++ + F       
Sbjct: 444 TPLRRLTKYDRLELESEQERLREEIAELSKILDDESVLKKLVSAELAKIAKDFPT----- 498

Query: 494 RRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            RRT        EV  A K +     +  +P  V++S  G +    + S + +    + G
Sbjct: 499 ERRTALIDGDLKEVLAASKPS-GPLEVADDPCQVILSATGLVARTAAESEEATETRRRNG 557

Query: 549 ----DSLKIALHAHTTDRILLLSTDGKAY 573
               D++   +H     +ILL+++ G+A+
Sbjct: 558 RVKHDAVAALVHTTARGQILLVTSRGRAF 586


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 308/523 (58%), Gaps = 12/523 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL       K
Sbjct: 12  ERIEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTEMGLRPDRGHVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++Y++LVR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 72  SARVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD-DGPAAARYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NG SGIAVGMAT++  H
Sbjct: 131 RLAAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGIAVGMATNMAPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+DNP+ +++ L+ YI GPD P+GG I      + ++Y  GRG FR+RA
Sbjct: 191 NLVEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGGAIA-GLSGVRDAYATGRGSFRMRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           +  +E +      +VVTE+PY V   R+IEKI + + AK++  + D+ D S     +R++
Sbjct: 250 KVGIEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDLSDRKHGLRLI 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K     P+ ++E ++  + +E  F +N   L  G  PQ + L  +L  +L HR  V+
Sbjct: 310 IGVKT-GFSPEAVLEQLYRHTPLEEGFSINSVALVEGG-PQTLGLRELLSVYLGHRIRVV 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RRS FR+     R+ +++GLL+A L+IDE I +IR   + D+ +  ++  F L+  Q D
Sbjct: 368 TRRSEFRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQVFDLSTLQAD 427

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-- 487
            IL LRLR L +    ++++E D L AE  ++++LL S       ++ E+ +V   F   
Sbjct: 428 YILELRLRRLTRFSRIELEAERDQLRAEIAELEALLASRSLINALVSDELEQVAATFGTP 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           + T L   + +    SR  KA   Q  +   P  V +S  G I
Sbjct: 488 RRTLLTEAKPSIASTSRG-KAAAAQLEVADVPCRVFLSTTGRI 529


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 214/688 (31%), Positives = 382/688 (55%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            +  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 237/739 (32%), Positives = 385/739 (52%), Gaps = 57/739 (7%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            +P    I+  M  +G      +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY
Sbjct: 1   MEPKGFEILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            ++ GQGN+G++DGDSAAA RYTE R+ ++ E ++Q +D++ VD +  +++   EP V P
Sbjct: 61  MVVDGQGNYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           ++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTG
Sbjct: 121 TRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTG 180

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           G I      + E+Y  GRG   +RAR  +E        IV+TEIPY V K+ LI+ IA+L
Sbjct: 181 GYIY-GMSGVREAYLTGRGRVIMRARAEIETSSTHDK-IVITEIPYGVNKAELIKNIADL 238

Query: 290 IIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
              K+I  + +  DES  E +RIV+  K R  +  +++  ++ ++ ++T F +N   L  
Sbjct: 239 ANDKKIEGISNANDESDREGMRIVIDIK-RDANASVVLNKLYKMTLLQTSFSVNNVALVH 297

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           GR P+++ L  ++K ++ HR EV+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR
Sbjct: 298 GR-PRLLNLKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIR 356

Query: 409 NEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
               P   +V    RF LTE Q  AI+ +RLR L  L + Q+ +E + ++      + +L
Sbjct: 357 AAKTPNDAIVGLIERFQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKMIAYYEEIL 416

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++ +     I  E+ EVK  +        RR+   E+  + +    +     + + + IS
Sbjct: 417 SNDELCRKVITDELIEVKAKYGDE-----RRS---EIVYSSEEFNPEDFYADDEMIITIS 468

Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I        R+     V       ++ D ++    A   + ++  +  GK Y L  
Sbjct: 469 HMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKV 528

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
             +  G     G AIQ L++++ + D V A+        L V +  +   +    ++  T
Sbjct: 529 YEIPEGTKNSKGRAIQNLLNIDSD-DAVNAY--------LRVKNLSDTDFINSHYVLFCT 579

Query: 636 RKG---KTFLKVSSEEKMKLVVKVT--------------GDH-VAVVGENRKLLIFSIDQ 677
           + G   KT L+  S  +   V  +T              GD+ + +   N + + F    
Sbjct: 580 KNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESA 639

Query: 678 IPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +  M R   GVR  +  + G  +V   IC K  E  T +  + + Y +  +        R
Sbjct: 640 VRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNR 699

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G        ++GK ++
Sbjct: 700 GGKGVKTMNITDKTGKLVT 718


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 199/492 (40%), Positives = 295/492 (59%), Gaps = 14/492 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MGL       K
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D  AA RYTEA
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT+IP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  GRG F  RA
Sbjct: 186 NVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYETGRGIFITRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312
           R  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S     +R+V
Sbjct: 245 RATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN    P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ ++ HR EV 
Sbjct: 305 VEVKN-GFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVFVDHRVEVT 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429
            RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D        +++ F L+E Q +
Sbjct: 363 RRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVFDLSEAQAE 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+     S  
Sbjct: 423 FILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTP 482

Query: 490 TDLGRRRTTFCE 501
                RRT   E
Sbjct: 483 -----RRTVLLE 489


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 330/596 (55%), Gaps = 27/596 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E++    +R  +   +L Y+ S I  RA+PD RDG KPV RRI+  M +MGL       
Sbjct: 14  DEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDDMGLRPDRGHV 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VG+V+G+LHPHGD ++YD+LVRL QP+  R PLI G GNFG+ D D  AA RYTE
Sbjct: 74  KSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGSPD-DPPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   A+ +   +DED VDFR  Y+  ++EPVV P+  PNLL NG SGIAVGMAT+I  
Sbjct: 133 CRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGASGIAVGMATNIAP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A   LI +PE  ++ L+ +I GPD PTGG IV   + + ++Y  G G F++R
Sbjct: 193 HNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIV-GLDGVRDAYATGNGSFKMR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A   VE+VGR    IV++E+PY V   ++IE + +L+ +K++  + D+++  +    + I
Sbjct: 252 ATARVEQVGR-RKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIADLKNLTDRHSGLSI 310

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN    P+ ++E ++  + MET F +N   L  G+ P+ + L  +L  +L HR +V
Sbjct: 311 VIEVKN-GFVPEAILEQLYRFTPMETSFGINAVALVDGQ-PRTLGLRQMLDVYLEHRYDV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS+FR      R+ +L+GLL+A ++IDE+I +IR   N  + K  + S F L+E Q 
Sbjct: 369 VRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSENRGEAKDRLRSVFDLSEPQA 428

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + ILNL L  L + +   ++SE++ L    E +D++L         +  E+ E+   F  
Sbjct: 429 EYILNLTLGRLTRYDRIVVESEMEELRRTIEALDAILGDETVLRGVVGDELAEMAATFGT 488

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------RSLKS------H 536
                 RRT   E +           +  +P   ++S+ G +      R + +      H
Sbjct: 489 P-----RRTILLESAGQTVTAATPVEVADDPCWALLSSTGLLARTSDDRPIGTDGGRAKH 543

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            V +SA+       + +        RI +L       T  A +L  G    E +QL
Sbjct: 544 DVIVSAVRTTARGEIGVVTAGGRVRRIGVLDLPALPATAGAPSLQGGVPVSEVVQL 599


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ I+  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVIINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 190/456 (41%), Positives = 288/456 (63%), Gaps = 14/456 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRII AM E+GL     F+
Sbjct: 3   KKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFR 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LV+L Q F  +YP + G GNFG+ID D  AA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYTE 122

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A    L+ +  + V+F + ++    EP V P++ P LL NG++GIAVGMAT+IP
Sbjct: 123 TRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +  + L+ N +IS +KL   I GPDFPTGG ++ SR +I E Y+ G+G   +
Sbjct: 183 PHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSR-AIEELYQTGKGSITI 241

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R     EEV  G+G      I++ E+PYQ+ K+  IEK+AEL+ A +I  + DIRDES  
Sbjct: 242 RGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDR 301

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           D +RIV+  K  S + +L++ +++  + ++T F      L  G+ P  + L   L  +L 
Sbjct: 302 DGMRIVIELKKDS-NSELVISNLYKKTTLQTNFGAIFLALIKGK-PVQLNLKKYLNYFLE 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423
            R E + +R+ + ++    ++EI +GL  A  +I ++IAII    N  + +  +V +F L
Sbjct: 360 FREETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFFL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +E Q +++L++ L+ L  LE+ QI +E+ N LAEK+
Sbjct: 420 SEKQANSVLDMPLKKLTNLEKNQIDNEIKN-LAEKK 454


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 217/630 (34%), Positives = 356/630 (56%), Gaps = 33/630 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++
Sbjct: 16  DDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTE 135

Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +  + +L+ ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP
Sbjct: 136 SRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LALI NPEI+ ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +
Sbjct: 196 PHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQIL-GRSGIRETYLTGRGSVTM 254

Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E +   GR     +V+T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D
Sbjct: 255 RGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRD 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R   P +++ +++ L+ +++ F  +M  L +   P ++ L  +L+ +L  R
Sbjct: 315 GMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLAL-VNSEPILLTLRKMLEVFLEFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+ 
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHGLSA 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++ 
Sbjct: 434 VQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRDR 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
            +       RRT   +++      L+   +I  E   V+++  G+++ +     + ++  
Sbjct: 494 HAVP-----RRTEILDLA----GGLEDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 543 LHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
              K G      +++K+ +  +  D +LL S  G +Y +PA  +   S    G  I  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYRVPQCSRTAKGTPIVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
            +   + I +      ++    LL++++ G
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTTGG 634


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 344/609 (56%), Gaps = 22/609 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG II + ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAII-QGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  ++  R P  + L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAINDQR-PVRVGLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW-----IRSLKSHSVDLSA 542
                 RRT   +  +  K T+  +  +  E + V++S  G+     IRS K+  V  + 
Sbjct: 479 P-----RRTQIEDTVQ--KLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNG 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
           L  +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++
Sbjct: 532 L--REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDE 589

Query: 601 DIVTAFVYD 609
            IV A + D
Sbjct: 590 VIVKAMLLD 598


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 161/319 (50%), Positives = 230/319 (72%), Gaps = 1/319 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD
Sbjct: 1   GYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D 
Sbjct: 61  SAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDT 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPE
Sbjct: 121 IDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPE 180

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           I+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VT
Sbjct: 181 ITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 239

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           E+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++ 
Sbjct: 240 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 299

Query: 332 LSDMETRFPLNMNVLSMGR 350
            + ++T F +N+  L  G+
Sbjct: 300 QTALQTSFGINLLALVDGQ 318


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 203/523 (38%), Positives = 314/523 (60%), Gaps = 15/523 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V +   ++  YL YA S I  RA+PD RDG KPV RRI++ MSE  L     F 
Sbjct: 13  EERIVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGMSEQRLTPDHPFV 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GKLHPHGD ++YD+LVR+ Q +  R  L+ G GNFG++D    AA RYTE
Sbjct: 73  KCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSLDA-GPAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+   A  +L G+ ED VDFR  Y+ +  EP V P+ FPNLL NG +GIAVGMAT+IPS
Sbjct: 132 CRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGATGIAVGMATNIPS 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP   +++L+ Y+ GPD PTGG IV   + I  +Y  GRG FR R
Sbjct: 192 HNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIV-GLDGIRAAYATGRGIFRTR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311
           A   +E+V      IV+TE+P+ V   ++I++I  L+ +K+I  + D++D  +    +R+
Sbjct: 251 ATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVKDLTDLTYGLRL 310

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  KN  ++P+ L+  ++  + +E  F +N   L  G+ P+ M L  +L+ +L HR EV
Sbjct: 311 VIEVKN-GINPEALLAQLYKHTKLEDSFGINAVALVDGQ-PRTMTLKEMLQVYLDHRLEV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F++     R+ +++GLL+A ++ID++IAIIR+ D   + +  ++  F L E Q 
Sbjct: 369 ILRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLMETFELDEIQA 428

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL+++LR L KL   ++++E D L     ++  L++    Q + +A ++ E+   +  
Sbjct: 429 NYILDMQLRRLTKLSRIELETERDELRRRITELTELIDDPDLQRDTVASQLSEMAATYGS 488

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI 530
                 RRT   E S A  A   Q + I  +P  V++S+ G +
Sbjct: 489 P-----RRTVLLEGSGAAAALPAQPLEIPDDPCWVMMSSTGLM 526


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 343/609 (56%), Gaps = 22/609 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG II + ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAII-QGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW-----IRSLKSHSVDLSA 542
                 RRT   +  +  K T+  +  +  E + V++S  G+     IRS K+  V  + 
Sbjct: 479 P-----RRTQIEDTVQ--KLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNG 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
           L  +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++
Sbjct: 532 L--REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDE 589

Query: 601 DIVTAFVYD 609
            IV A + D
Sbjct: 590 VIVKAMLLD 598


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 228/741 (30%), Positives = 405/741 (54%), Gaps = 41/741 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      F+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKPFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  I GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNCTVDDLLAIIKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K +  + + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV+ 
Sbjct: 303 ELK-KEANAEGILNYLYKNTDLQITYNFNMVAIN-NRRPTLMTLPNILDAYIGHQKEVVT 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           RRS + ++  + R  I++GL+ A   +D++I  IR ++DK   K  ++++FS TE Q +A
Sbjct: 361 RRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAKFSFTEAQAEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +++E + L  +   + ++LNS K+    I  +++ VK+ +S   
Sbjct: 421 IVSLQLYRLTNTDITALENEAEELNQKITTLQAILNSEKKLLQVIKADLKRVKKTYSDE- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKE 547
               RR+   E     K  + + MI +E + V ++  G+++    +SH+  +      KE
Sbjct: 480 ----RRSVIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKE 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
           GD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ ++ A
Sbjct: 535 GDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIWA 594

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
            V   ++   + +V  ++       E       R  + F+ ++ ++  ++V     D   
Sbjct: 595 TVVPNFEEEKRFVVFVTRNGMIKKTELNQYKVQRYSRAFVAINLKKDDEVVDIFATDGTS 654

Query: 660 HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +       LIF  +++ P   R  GV+  + K+    D +             AG+ 
Sbjct: 655 DIVLATHGAYALIFDEEEVSPVGVRAAGVKAINLKE---DDYVA------------AGKP 699

Query: 719 YNRSENDLLGWLGKRGGVGSL 739
            N SE D    + +RG V  L
Sbjct: 700 LN-SEKDQFMLVTQRGAVKRL 719


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 205/612 (33%), Positives = 345/612 (56%), Gaps = 26/612 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++T +EE    ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +
Sbjct: 5   ADTRIEE----LTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTY 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA
Sbjct: 61  DKGFRKSAKAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G A
Sbjct: 121 MRYTEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG II + ++ I ++Y  GRG
Sbjct: 181 TEIPTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAII-QGKDGIKKAYETGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+   
Sbjct: 240 RVVVRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRT 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA +
Sbjct: 300 GLRIAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           +EV+ RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T 
Sbjct: 359 KEVITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ 
Sbjct: 419 TQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKE 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW-----IRSLKSHSVD 539
           F+       RRT   +  +  K T+  +  +  E + V++S  G+     IRS K+  V 
Sbjct: 479 FANP-----RRTQIEDTVQ--KLTVDTRVTVADEEVIVLVSAAGYIKRSSIRSFKASEVG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
            + L  +E D   +     T   + + +  G+    P   L   R    GE +   IDL+
Sbjct: 532 DNGL--REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLD 589

Query: 598 HNQDIVTAFVYD 609
            ++ IV A + D
Sbjct: 590 DDEVIVKAMLLD 601


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 192/588 (32%), Positives = 335/588 (56%), Gaps = 28/588 (4%)

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NGT+GIAVGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +++ Y  GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P+
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + D+RDES  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+ 
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLK 175

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK 
Sbjct: 176 NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA 235

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +
Sbjct: 236 ELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLV 295

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLK 534
             E+    E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K
Sbjct: 296 RAELIADAETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAK 348

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +
Sbjct: 349 GHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKL 408

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                       + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L  
Sbjct: 409 QPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPR 468

Query: 655 KVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFK 704
            V     + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    
Sbjct: 469 PVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV-- 526

Query: 705 ICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           I +G T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 527 IGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 574


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 305/525 (58%), Gaps = 19/525 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     ++
Sbjct: 16  ERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAAMRYTE 135

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A E +L  +  D VDF + ++    EP V P++ P LL NG +GIAVGMAT+IP
Sbjct: 136 TRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +AL+  PE+S EKLLE + GPDFPTGG ++ +   + ++Y  GRG   +
Sbjct: 196 PHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVL-TGSGLRDTYLYGRGSIPM 254

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EE+  G+G      +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES  
Sbjct: 255 RGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRDESDR 314

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R  +P+ ++  +   + +++ +   +  L  G+ P  + L  +L+E+L +
Sbjct: 315 DGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVHGK-PIQLSLRQLLQEFLDY 373

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R   + RR+   ++  + R+E+++GL+ A   +  +I +I    +    K  +     + 
Sbjct: 374 RELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARLQVHLDIN 433

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DA+L + LR L  LE+  ++ E D+L  E+ ++  LL+      + +  E + +K+
Sbjct: 434 ERQADAVLAMPLRRLTGLEQESLRKEADDLRQERARLRHLLDERPALLDTMVAEFKALKK 493

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            F+       RRT   E    D+   Q+   ++ P T ++  R +
Sbjct: 494 RFATP-----RRTRLVE--GGDELVAQRTAAQR-PNTELLRQRAF 530


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 332/563 (58%), Gaps = 24/563 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +EE YL YA S I  RA+PD RDG KPVHRRI+++M E G     A+ KS+R+VG+V+G+
Sbjct: 32  IEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNHAYVKSSRVVGDVMGR 91

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VRLAQ F    PL+ G GNFG+ D D  AA RYTEARM+  A L++ 
Sbjct: 92  YHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASRYTEARMSSEAMLLVD 150

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN+ EI  AA  
Sbjct: 151 ELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEIVAAARW 210

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264
           LI++P  S++KL+E++ GPD PTGG ++   + + ++Y  GRG  R+RA+     + G  
Sbjct: 211 LINHPNASLDKLMEFVPGPDLPTGGQLL-GLDQVRKAYETGRGVVRMRAKATTGPIEGSR 269

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDP 322
              I VTE+PY V   ++IE+I E +   KR+  + D++D    E+   ++      ++P
Sbjct: 270 RQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDRENGTKLVIECKVGVNP 329

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV+ RR+ +R + 
Sbjct: 330 QALLADLYRLTPLEQSFGINNLVLVDGQ-PRTLGLKELLEVFLAHRYEVVTRRTRYRRRK 388

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            + R+ +++GLL A ++ID++I +IR   N    K  ++ RF L+E Q   IL+  LR L
Sbjct: 389 REERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKRFKLSEVQAAYILDTPLRRL 448

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K ++ +++SE D L  E  ++  +L+  K     ++ E+ +V + F+       RRT  
Sbjct: 449 TKYDKLELESEQDRLRKEIAELTEILDDEKVLKRVVSKELAKVAKDFAVP-----RRTAL 503

Query: 500 C-----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                 EV  A K       +  +P  V++S+ G +    + S +      + G +   A
Sbjct: 504 IDGDLKEVLAASKPA-GPLEVADDPCQVILSSTGLVARTAAESEEAVEGRRRSGRARHDA 562

Query: 555 LHA--HTTDR--ILLLSTDGKAY 573
           + A  HTT R  +LL++  G+A+
Sbjct: 563 IAAMVHTTARGQVLLVTNRGRAF 585


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/528 (35%), Positives = 313/528 (59%), Gaps = 13/528 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGGII +  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGII-QGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R P  + L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQR-PVSVGLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +  K     ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
              RR     EVS+    T    MI  E + V I+  G+ +  S +S+
Sbjct: 481 ---RRSQIQTEVSQLKIDT--AVMIANEDVIVQITKNGYAKRASFRSY 523


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 298/475 (62%), Gaps = 5/475 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA 475


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/314 (50%), Positives = 228/314 (72%), Gaps = 1/314 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVL 346
           + ++T F +N+  L
Sbjct: 300 TALQTSFGINLLAL 313


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 213/699 (30%), Positives = 374/699 (53%), Gaps = 27/699 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      F   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P  S+  L++++ GPDFPTG I++  +  I E+Y  GRG  +VRA
Sbjct: 186 NLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDK-GIKEAYESGRGRIQVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H  +V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDH-MTPVQVGLKRILSSYLEHDADVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +     R+EI++GL+ A   +D++I  IR   N+   K  ++ +FS T  Q +AI
Sbjct: 364 RTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    D LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFKEG 548
            G  R T      A     ++A++ +E + V++S  G+++  SL+S  S + S     + 
Sbjct: 479 -GSERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D +       T   + + +  G     P   L+  +    G+ +   + L+ ++ I+  F
Sbjct: 538 DKVVFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVF 597

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV------ 656
                DS    L+ ++ G    +  ++I    T K +  + +  +E    VV+V      
Sbjct: 598 ELAKLDSRLNFLLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPD 657

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           T   + +   +   + + +++IP   +R  GV+  + KD
Sbjct: 658 TKKEITLFTNHAYAVRYDVNEIPTSGARAAGVKSVNLKD 696


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 324/534 (60%), Gaps = 17/534 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A E  LQ ++ D V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI + +IS  KL + I+GPDFPTGG ++ +   I   Y  GRG  
Sbjct: 181 IPPHNLGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYNN-GIKNVYLEGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EE+  G+G      ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TIRGVIKSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D +RIV+  K  S +P++++ +++  + +++ F   +  L  G+ P  + L   L  +
Sbjct: 300 DRDGMRIVIELKKDS-NPEIVISNLYKKTTLQSNFGAILLALVNGK-PVQLTLRKYLNYF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L  R E + +R+ + ++    ++EIL+G  IA  NI  II II+N +   + K +++ + 
Sbjct: 358 LEFREETIRKRTKYFLKIASEKLEILEGFSIATKNIKNIIEIIQNSENVSEAKSILIPKL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q DA+L++ L+ L  LE+ Q+++E++ L  +K+ + +LLN+       +  E+ E
Sbjct: 418 DLSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKYLSTLLNNRSLLLETLIKELIE 477

Query: 482 VKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +K+ F+  + T + +      E+   +   L+  +I+   I+  I NR + + L
Sbjct: 478 LKKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDAKIS--IDNRFYFKKL 529


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 205/612 (33%), Positives = 345/612 (56%), Gaps = 26/612 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++T +EE    ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +
Sbjct: 5   ADTRIEE----LTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTY 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA
Sbjct: 61  DKGFRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G A
Sbjct: 121 MRYTEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG II + ++ I ++Y  GRG
Sbjct: 181 TEIPTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAII-QGKDGIKKAYETGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+   
Sbjct: 240 RVVVRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRT 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D   ++  +   +D++  +  NM  +   R P  + L   L  +LA +
Sbjct: 300 GLRIAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQR-PVRVGLKHYLASYLAFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           +EV+ RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T 
Sbjct: 359 KEVITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ 
Sbjct: 419 TQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKE 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW-----IRSLKSHSVD 539
           F+       RRT   +  +  K T+  +  +  E + V++S  G+     IRS K+  V 
Sbjct: 479 FANP-----RRTQIEDTVQ--KLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
            + L  +E D   +     T   + + +  G+    P   L   R    GE +   IDL+
Sbjct: 532 DNGL--REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLD 589

Query: 598 HNQDIVTAFVYD 609
            ++ IV A + D
Sbjct: 590 DDEVIVKAMLLD 601


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 195/523 (37%), Positives = 304/523 (58%), Gaps = 16/523 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M  MGL       K
Sbjct: 7   EHIMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDRGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VG+V+G+LHPHGD ++YD++VRLAQ F  R P + G GNFG+ D D  AA RYTE 
Sbjct: 67  SSRVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   + ED VD    Y+    EP V P+  P+LL NG+SGIAVGMAT++  H
Sbjct: 126 RMAPAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   A  L++NP+  +E+L+ YI GPD P GG IV   + I ++Y+ GRG FR RA
Sbjct: 186 NLNEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIV-GIDGIRQAYKTGRGIFRTRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312
              +E V      I+ TE+PY     ++IEKI + + +K++  +  +++  +     R+V
Sbjct: 245 TAHIENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGTRLV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  KN + +P+ ++ +++  + +E  F +N   L  G+ P+ M L  IL+ +L HRR V 
Sbjct: 305 VEVKN-AFNPEAVLAALYQHTPLEESFGINNVALVEGQ-PRTMGLKEILQVFLDHRRSVT 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVD 429
            RR  FR++    R+ +++GLLIA ++ID++IAIIR +ED       ++S F L++ Q D
Sbjct: 363 KRRCEFRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANRLISVFDLSQPQAD 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL LRLR L K  + ++++E ++L    +++ ++L S  +    I+ E+ +V   +   
Sbjct: 423 YILELRLRRLTKFSQIELETERNSLQETIDELLAILGSEDRMRQLISTELADVARQYGTP 482

Query: 490 TDLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWI 530
                RRT   E    +  KA   +  I  +P  V++S  G I
Sbjct: 483 -----RRTVLLEADAVQKSKANAPKLKITDDPCRVLLSATGKI 520


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 225/678 (33%), Positives = 374/678 (55%), Gaps = 28/678 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   ++KSA+ VG VIG  H
Sbjct: 17  ERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRKSAKTVGLVIGNYH 76

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +    PLI  QGN G+ID D AAA RYTEAR++++++ +L+ +
Sbjct: 77  PHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTEARISKLSQKLLENI 136

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           DE+ V F   +++  +EP V P+++PNLL NG++GIA G AT+IP  N+ EI +A++  +
Sbjct: 137 DEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPFNLNEIMDASIYRL 196

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            NP  S+E+++  + GPDFPTG II + +E I +  R G+G   VRA+  + E  +    
Sbjct: 197 HNPNCSVEEIMTMVQGPDFPTGAII-QGQEGIEDIIRKGKGRIVVRAKAEIVE-NKSMKQ 254

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKR---IPLLEDIRDESAED-VRIVLFPKNRSLDPD 323
           IV+TE+PY+V KS ++ KI EL   K       + D+RDES    +RIV+  K R  + +
Sbjct: 255 IVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLRIVIDCK-RDANVE 313

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            ++   +  ++++  +  NM V  + + P+V  L  +L  +L  R+EV+  RS +R +  
Sbjct: 314 SILNLFYKYTELQVYYNANM-VAIVDQRPKVCGLLEVLDAYLKFRQEVVLNRSKYRYEQK 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           ++R+ IL+GL+ A  N+DEIIA+IR   N  + +  +++ F  TE Q  AI++L+L  L 
Sbjct: 373 EKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTEAQATAIVDLQLYRLS 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +   ++ E   L  E E +D ++N+     N I  E  E+KE F    D  RR     
Sbjct: 433 STDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEAF----DTPRRSVIEA 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGDSLKIALHA 557
           E+S  +   L  ++I  E + V +S  G+++  SL+S+ S     +   + D    +   
Sbjct: 489 EISELEVDHL--SLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDVIALMDEDMPVFSSEV 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCK 613
            TTD ++ +++ G+   +    +     R  G  I   +  + N+ I++ F   S  T +
Sbjct: 547 ETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFTLKSFDTYR 606

Query: 614 LLVVSSKGNAF---IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
            +V S+         + E E+    R          +E +  V+    +H+ +V +  + 
Sbjct: 607 FIVTSTASGMIKKTAISELEVKRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQC 666

Query: 671 LIFSIDQI-PEMSRGKGV 687
           +   + +I P   R KGV
Sbjct: 667 MRLDLAEINPIGLRAKGV 684


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 216/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++ + I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDNLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             +  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITIITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/528 (35%), Positives = 313/528 (59%), Gaps = 13/528 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGGII +  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGII-QGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R P  + L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQR-PVSVGLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +  K     ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
              RR     EVS+    T    MI  E + V I+  G+ +  S +S+
Sbjct: 481 ---RRSQIQTEVSQLKIDT--AVMIANEDVIVQITKNGYAKRASFRSY 523


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 386/689 (56%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++R+ I++GL+ A   +D++I +I   +N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 219/699 (31%), Positives = 388/699 (55%), Gaps = 27/699 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAID-NMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSA 542
           F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+ S D + 
Sbjct: 480 FGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L+    R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
                 + + + +V  N   L F ++++P +  R  GV+
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 223/736 (30%), Positives = 399/736 (54%), Gaps = 39/736 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  +
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLRDIRWKELGQHVSQIVPIEEDEVVINVY 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V  N+ + L ++  ++ +   R  GV+  + K   + D +   + EG+           
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVKSINLK---VEDFVV--MTEGV----------- 698

Query: 721 RSENDLLGWLGKRGGV 736
            SEND +    +RG +
Sbjct: 699 -SENDTILMATQRGSL 713


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 219/699 (31%), Positives = 388/699 (55%), Gaps = 27/699 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAID-NMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSA 542
           F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+ S D + 
Sbjct: 480 FGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L+    R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
                 + + + +V  N   L F ++++P +  R  GV+
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/455 (40%), Positives = 286/455 (62%), Gaps = 13/455 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     F+
Sbjct: 3   KKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRPFR 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRYTE 122

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A    L+ +  + V F + ++    EP + P++ P LL NG+SGIAVGMAT+IP
Sbjct: 123 TRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ S  +I E Y  G+G   +
Sbjct: 183 PHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSH-AIKELYETGKGSITI 241

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EEV  G+G      I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES  
Sbjct: 242 RGVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           D +RIV+  K  S + +L++ +++  + ++T F      L  G+ P+ + L   L  +L 
Sbjct: 302 DGMRIVIELKKDS-NSELVISNLYKQTTLQTNFGAIFLALIKGK-PKQLNLKEYLNYFLE 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423
            R E + +R+ + ++    ++EI +GL  A  NI ++I II    N +K +  ++  F L
Sbjct: 360 FREETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIENFFL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +E Q +++L++ L+ L  LE+ +I  E+ +L  +K
Sbjct: 420 SEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKK 454


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 344/596 (57%), Gaps = 18/596 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+KSA+ V
Sbjct: 10  LPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKPFRKSAKTV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVY++++R +Q +  R+ L+   GN G++DGD  AA RYTEAR++++
Sbjct: 70  GNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRYTEARLSKI 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ ++++ VDF   +++   EPVV P  +PNLL NG++GI+ G AT IP H++ E+
Sbjct: 130 SSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDIPPHHLGEV 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+  +D+P+ S+  LL YI GPDFPTGGII +  E + ++Y  G+G   +R +  V+
Sbjct: 190 IDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGII-QGIEGLQKAYESGKGKVVLRGKAEVQ 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
            +      I++TEIPY++ K+ L++K+ EL I K++  + ++RD++    +RIV+  K +
Sbjct: 249 AIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRIVIELK-K 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D   ++  ++  +D++  +  NM V    + P++M L  +L  ++ H++EV+ RR++F
Sbjct: 308 EADSQGILHFLYKNTDLQVSYHFNM-VAIHNKTPKLMGLKQMLDAYIQHQKEVVTRRTNF 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLR 435
            +     R  I++GL+ A   +DE+IA IR ++DK   K  + + +  TE Q +AI+NL+
Sbjct: 367 DLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRLQASYQFTEPQSEAIVNLQ 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L   +   ++ E   L    +K++++L S K    +I  E+R +K+ ++        
Sbjct: 427 LYRLTNTDITTLEKEAGELRELIKKLEAILESEKNLIKEIKKELRYIKKTYTDE------ 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLK 552
           R T  E    D     + ++  E + V ++  G+++  S++S++  +      KE D L 
Sbjct: 481 RRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYVKRSSIRSYTASNGEEPSMKETDRLI 540

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
             L  +TTD +L  +  G    +P   L     +  G+ I  ++ ++ +  I+ A 
Sbjct: 541 HDLEVNTTDTLLFFTKKGSYLFVPVHQLPETKWKDGGQHIANIVTMDQDDPIIHAI 596


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 377/688 (54%), Gaps = 34/688 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA    +        
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+ +
Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDVNL 312

Query: 327 ESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + +  +
Sbjct: 313 ENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L 
Sbjct: 373 LLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLT 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   F 
Sbjct: 433 RTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFD 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHA 557
           E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      
Sbjct: 489 EFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVI 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL- 614
           ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K+ 
Sbjct: 547 NSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVD 606

Query: 615 ---LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V    K
Sbjct: 607 EHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISK 666

Query: 670 L---LIFSIDQIPEMSR-GKGVRLQSYK 693
           L   L+F + +I  ++R  KG+++   K
Sbjct: 667 LGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 377/688 (54%), Gaps = 34/688 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA    +        
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+ +
Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDVNL 312

Query: 327 ESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + +  +
Sbjct: 313 ENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L 
Sbjct: 373 LLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLT 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   F 
Sbjct: 433 RTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFD 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHA 557
           E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      
Sbjct: 489 EFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVI 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL- 614
           ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K+ 
Sbjct: 547 NSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVD 606

Query: 615 ---LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V    K
Sbjct: 607 EHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISK 666

Query: 670 L---LIFSIDQIPEMSR-GKGVRLQSYK 693
           L   L+F + +I  ++R  KG+++   K
Sbjct: 667 LGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 217/689 (31%), Positives = 385/689 (55%), Gaps = 24/689 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+    +RI +
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+ 
Sbjct: 302 ELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVA 359

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
            R+ F +   ++ + I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +A
Sbjct: 360 NRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F    
Sbjct: 420 IVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKE 547
                R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+
Sbjct: 479 -----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  
Sbjct: 534 GDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINV 593

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHV 661
           F   D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D +
Sbjct: 594 FNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKKNDDLISVMRFEKDQL 653

Query: 662 AVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
             V  N+ + L ++  ++ +   R  GV+
Sbjct: 654 ITVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/391 (45%), Positives = 269/391 (68%), Gaps = 9/391 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI +SN    +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM++
Sbjct: 3   ENIFSSN----QDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DG
Sbjct: 59  LGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGI
Sbjct: 119 DGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGGII   ++ I+E+Y
Sbjct: 179 AVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIF-GKKGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  ++RA+  +E+       IVV E+PYQV K++L   IA+L+  K I  + ++RD
Sbjct: 238 KTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRD 296

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES  D +R+V+  K  ++  ++++ ++F  + ME  F + M  ++  + P+V  L  +LK
Sbjct: 297 ESDRDGIRLVIELKRDAMS-EIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLK 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +L HR+ V+ RR+ F +Q    R  IL+G 
Sbjct: 355 LFLNHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 222/736 (30%), Positives = 399/736 (54%), Gaps = 39/736 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RR+++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +AI
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    ++ M+  E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  +
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVY 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V  N+ + L ++  ++ +   R  GV+  + K   + D +   + EG+           
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVKSINLK---VEDFVV--MTEGV----------- 698

Query: 721 RSENDLLGWLGKRGGV 736
            SEND +    +RG +
Sbjct: 699 -SENDTILMATQRGSL 713


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/323 (50%), Positives = 233/323 (72%), Gaps = 2/323 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPL 357
           ++T F +N+  L  G+ P+V+ L
Sbjct: 300 LQTSFGINLLALVDGQ-PKVLSL 321


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/323 (50%), Positives = 233/323 (72%), Gaps = 2/323 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPL 357
           ++T F +N+  L  G+ P+V+ L
Sbjct: 300 LQTSFGINLLALVDGQ-PKVLSL 321


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 227/690 (32%), Positives = 379/690 (54%), Gaps = 38/690 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA--RWCVEEVGRGS 265
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA   +   EV    
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQ 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+
Sbjct: 258 --IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDV 310

Query: 325 LMESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            +E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + + 
Sbjct: 311 NLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLN 370

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
            +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +
Sbjct: 371 KVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHN 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   
Sbjct: 431 LTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKL 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIAL 555
           F E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L    
Sbjct: 487 FDEFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHN 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K
Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604

Query: 614 L----LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           +    LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V   
Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAI 664

Query: 668 RKL---LIFSIDQIPEMSR-GKGVRLQSYK 693
            KL   L+F + +I  ++R  KG+++   K
Sbjct: 665 SKLGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 216/713 (30%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAID-NMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACE 478
            Q +AI++L+L  L         ++++ LL+EK++++        ++N+  +    I  E
Sbjct: 420 KQAEAIVSLQLYRL-------TNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
             +VK+ F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+
Sbjct: 473 FEDVKKEFGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSY 526

Query: 537 -SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            S D +      GD +       T   + + +  G     P   L+    R  G+ +   
Sbjct: 527 QSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQE 586

Query: 594 IDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L +++ I++ F + +    L+ + +  + +I + +  +++ +  +T+     + +  +
Sbjct: 587 IVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQVA--LSDLQPTRTY-----KSRAIM 639

Query: 653 VVKVTGDH----------------VAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
           V+K+  DH                + +V  N   L F ++++P +  R  GV+
Sbjct: 640 VIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/321 (51%), Positives = 228/321 (71%), Gaps = 3/321 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAII-DGRVGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDM 335
            K +  +P+L++  ++  +D+
Sbjct: 302 VK-KGEEPELVLNKLYKYTDL 321


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 346/584 (59%), Gaps = 16/584 (2%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+KSA+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKHFRKSAKTVGTVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD++VRL+Q +  R  LI   GN G+IDGD  AA RYTEAR++ ++  +L+ +
Sbjct: 78  PHGDSSVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRYTEARLSSISAELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+  VD+   ++E   EPVV P+KFPNLL NG++GI+ G AT IP HN++E+ +A +  I
Sbjct: 138 DKQTVDYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDIPPHNLEEVMDAVILKI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D PE SI+ L++ + GPDFPTGGII +  E I ++Y  GRG   VR +  VE +  G   
Sbjct: 198 DKPEASIDDLMKLMKGPDFPTGGII-QGVEGIRKAYETGRGKIIVRGKAVVETMKGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IVVTE+P++V K+ +++K+ EL I +++  + ++RDE+      V+    +  + + ++ 
Sbjct: 257 IVVTEVPFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRVVIELKKDANSEGVLN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    + P+++ L  +L  ++AH++EV+ R+ ++ +   + R 
Sbjct: 317 YLYKNTDLQITYHFNM-VAIQDKTPKLLSLPSLLDAYIAHQKEVVTRQITYDLNKANARA 375

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR ++DK   K  + +++  TE Q +AI+ L+L  L   + 
Sbjct: 376 HIVEGLIKAISILDELIATIRASKDKGDAKAQIKAKYGFTEEQAEAIVMLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +++ E   L  + ++ +S+L+S K+ +  I  E+R++K+ F+       RRT   E   
Sbjct: 436 VELEKEAAELKEKIKEYESILSSDKKLFQTIKKELRQIKKKFADP-----RRTVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIALHAHTTD 561
             K  + +  +  E + V ++  G+++  SL+S++  +   L  K+ D     L  +TTD
Sbjct: 491 ELKINI-EVTVASEDVLVSVTRDGYLKRTSLRSYAASNEEELPVKDDDYPISLLEVNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
            +LL +  GK    P   L  +  +  G+ I  ++ L+  + ++
Sbjct: 550 NLLLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEYLI 593


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 212/705 (30%), Positives = 387/705 (54%), Gaps = 46/705 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAH-MTPVQVGLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELRAVKKEFGSD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFK 546
               RR     E +R +    ++A+I +E + V+IS  G+I+  S++S  S +       
Sbjct: 482 ----RRSEISDEKARVE--VDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+  +    G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            F      D     L+ ++ G  FI + +  +A+ +  +T+     + +  + +K+ G+ 
Sbjct: 596 VFALEALDDPNLAFLLATNDG--FIKQVA--LADLQPTRTY-----KSRAIMAMKMKGED 646

Query: 661 VAVV-------GENRKLLIFS---------IDQIPEM-SRGKGVR 688
             V+        E R++ +F+         I ++P++ +R  GV+
Sbjct: 647 SRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVK 691


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 351/601 (58%), Gaps = 16/601 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AMS  G      F+K
Sbjct: 5   QDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++E +L+ +D+  V+F   +++ + EP V P+++PNLL NG +GI+ G AT IP+H
Sbjct: 125 RLSKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  ID+P+ ++++L++++ GPDFPTGGII +  E + ++Y  GRG   +R+
Sbjct: 185 NLGEVIDATIHAIDHPKATVKELMQFVKGPDFPTGGII-QGLEELEQAYETGRGKVVIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I+++EIPY+V K+ L++KI E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  +   +D++  +  NM  +   R  QV  L  IL  ++  ++EV+ R
Sbjct: 304 ELKKEANAEGILNYLLKNTDLQVNYNFNMVAIDERRPVQV-GLKTILTSYINFQKEVITR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDK--PKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ I+ GL+ A   +DE+IA+IRN +DK   K  +V  +  T  Q +AI
Sbjct: 363 RTQYDLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVETYDFTMIQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +NL+L  L   +   +++E  +L  +     S+L S K     +  E+R++K+ ++    
Sbjct: 423 VNLQLYRLTNTDITILQNEKLDLNEQIATFLSILKSEKTLLQVMKSELRDLKKKYATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R T  +    +     + ++ +E + VV + +G+ + +   S   SA      +EG
Sbjct: 481 ----RLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYYKRVSPRSFASSAPEENGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D + +   A T D ++L ++ G    LP   +   +    G  +   I L  N+ I+T F
Sbjct: 537 DEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKWKDVGNHLSQSISLGSNEVILTGF 596

Query: 607 V 607
           V
Sbjct: 597 V 597


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 229/317 (72%), Gaps = 1/317 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSMGR 350
            ++T F +N+  L  G+
Sbjct: 300 ALQTSFGINLLALVDGQ 316


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 165/321 (51%), Positives = 228/321 (71%), Gaps = 3/321 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG II + R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  E +RI++ 
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 315 PKNRSLDPDLLMESIFMLSDM 335
            K +  +P+L++  ++  +D+
Sbjct: 302 VK-KGEEPELVLNKLYKYTDL 321


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 197/534 (36%), Positives = 324/534 (60%), Gaps = 17/534 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A E  LQ +  + V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI++ EIS  +L + I+GPDFPTGG ++    ++ E Y  GRG  
Sbjct: 181 IPPHNLGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELI-CNSAMNEVYLQGRGSV 239

Query: 251 RVRARWCVEEVGRGSW-----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            VR     EE+  G        ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TVRGVIKNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             D +R+V+  K  S + ++++ ++F  + +++ F      L  G+ P  + L   L  +
Sbjct: 300 DRDGMRVVIELKKDS-NSEIVVSNLFKKTALQSNFGAIFLALVDGK-PIQLTLRKYLNYF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L  R E + +R+ + ++    + EIL+G  IA  NI +II +I+N +   + K +++ + 
Sbjct: 358 LEFREETIRKRTKYFLRIASEKFEILEGFSIATKNIKDIIEVIQNSENATEAKSILIVKL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q DA+L++ L+ L  LE  QI+ ++  LL +K+ +++LLN+ +   + +  E++ 
Sbjct: 418 SLSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKYLNNLLNNRRLLLDTLIEELKS 477

Query: 482 VKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +K+ F+  + T + +      E+   +   L+  +I KE   + + NR + + +
Sbjct: 478 LKKKFNVKRKTKILKDINQEKEIDTINNQILED-LINKET-KISVDNRFYFKKI 529


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 211/705 (29%), Positives = 387/705 (54%), Gaps = 46/705 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++    P  + L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAH-MTPVQVGLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E++ VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELQAVKKEFGSD 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFK 546
               RR     E +R +    ++A+I +E + V+IS  G+I+  S++S  S +       
Sbjct: 482 ----RRSEISDETARVE--VDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+  +    G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            F      D     L+ ++ G  FI + +  +A+ +  +T+     + +  + +K+ G+ 
Sbjct: 596 VFALEALDDPNLAFLLATNDG--FIKQVA--LADLQPTRTY-----KSRAIMAMKMKGED 646

Query: 661 VAVV-------GENRKLLIFS---------IDQIPEM-SRGKGVR 688
             V+        E R++ +F+         I ++P++ +R  GV+
Sbjct: 647 SRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVK 691


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 227/690 (32%), Positives = 379/690 (54%), Gaps = 38/690 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA--RWCVEEVGRGS 265
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA   +   EV    
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQ 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+
Sbjct: 258 --IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDV 310

Query: 325 LMESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            +E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + + 
Sbjct: 311 NLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLN 370

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
            +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +
Sbjct: 371 KVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHN 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   
Sbjct: 431 LTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKL 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIAL 555
           F E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L    
Sbjct: 487 FDEFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHN 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K
Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604

Query: 614 L----LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           +    LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V   
Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAI 664

Query: 668 RKL---LIFSIDQIPEMSR-GKGVRLQSYK 693
            KL   L+F + +I  ++R  KG+++   K
Sbjct: 665 SKLGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 216/713 (30%), Positives = 398/713 (55%), Gaps = 55/713 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDH-MAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACE 478
            Q +AI++L+L  L         ++++ LL+EK++++        ++N+  +    I  E
Sbjct: 420 KQAEAIVSLQLYRL-------TNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
             +VK+ F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+
Sbjct: 473 FEDVKKEFGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSY 526

Query: 537 -SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            S D +      GD +       T   + + +  G     P   L+    R  G+ +   
Sbjct: 527 QSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQE 586

Query: 594 IDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           I L +++ I++ F + +    L+ + +  + +I + +  +++ +  +T+     + +  +
Sbjct: 587 IVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQVA--LSDLQPTRTY-----KSRAIM 639

Query: 653 VVKVTGDH----------------VAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
           V+K+  DH                + +V  N   L F ++++P +  R  GV+
Sbjct: 640 VIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 283/462 (61%), Gaps = 11/462 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     +
Sbjct: 16  VEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P  G I+  R+ I ++Y  GRG    
Sbjct: 195 THNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPG-GGIIIGRQGIRDAYETGRGVVTT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D+ D      
Sbjct: 254 RSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH-NGT 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP  ++  +F  + ++  F +N   L  GR P  + L  +L  W+ HRR
Sbjct: 313 RIVIELKT-GFDPAAVLAQLFKHTPLQENFAINNVALVNGR-PHTLGLRSLLDVWIEHRR 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
            V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +     ++SRFSL + 
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           Q   IL+LRLR L K+   +++SE D L +   +++ +L S 
Sbjct: 431 QAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSA 472


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 306/545 (56%), Gaps = 40/545 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S    +E+ YL+Y +ST+  RA+PD+RDG KPVHRRI+ +M+E          KSA
Sbjct: 18  VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+G+ HPHGD ++YD++VR+ Q +  RYPLI  QGNFG+ID D  AA RYTE+R+
Sbjct: 78  KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  + E  VDFR  Y+    EPVV P++FPNLL NG  GIAVGMAT+IP H++
Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  EA L  + NP +++++++  + GPD PTGG+I   R  I +++  GRG  RV    
Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVI-HGRSGIRQAFATGRGAIRVSGVA 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
            VEE   G   IV+ ++PY V K+  +EK+AEL+  K+I  + DIRDES++   +RIV+ 
Sbjct: 257 SVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVID 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLF 373
            + +  DP +++  +   +D  T   +NM  L S GR P+ M +  +L E++  RREV+ 
Sbjct: 317 VR-KDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGR-PRTMGVLQVLGEFVDFRREVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------ 409
           RR+  R++     +    GL  A L IDEI+A+IR+                        
Sbjct: 375 RRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQ 434

Query: 410 ---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              E  P   +   F L++ QV AIL +RL  L  LE  +I      L  E      +LN
Sbjct: 435 LLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILN 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   +  E+ E+K  F      GRR  T  E S  D A   + ++E + I V ++ 
Sbjct: 495 VKAVLDGVVRRELEEIKAAFPD----GRR--TAIEDSALD-ALSDEDLVELKDIVVTVTA 547

Query: 527 RGWIR 531
            G+++
Sbjct: 548 GGYVK 552


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 207/600 (34%), Positives = 338/600 (56%), Gaps = 18/600 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G      
Sbjct: 1   MTEKNI-IMSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKP 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R PL+  QGN G+ID D AAA RY
Sbjct: 60  YRKSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  +A  +++ +D++ V     +++ + EP VFP+K+PNLL NG +GI+ G AT I
Sbjct: 120 TEARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A +  I +P  S ++L ++I GPDFPTG  IVE    I  + R GRG   
Sbjct: 180 PPHNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGA-IVEGASDIATALRTGRGKVV 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R+ + E  +    I++TEIPY+V K+ L+ K+AE+   + I  + ++RDES  +   
Sbjct: 239 VRSRYKIVE-QKNINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLC 297

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     + +D    +   F  +D++  +  NM  +   R P +M ++ IL  ++ H  EV
Sbjct: 298 IAVDLKKDVDARNTLNYFFKNTDLQKNYNYNMTAIKDKR-PVLMGIEDILDGYIKHECEV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQV 428
           + +RS F +     R  I++GL+ A   +DE++  IR ++DK   K  +++ F  TE Q 
Sbjct: 357 VTKRSIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLMNAFGFTERQA 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E   L A  E ++++L S K     I  E++ VK+ +  
Sbjct: 417 EAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILTSEKVLRKVIIDELKGVKKKYPT 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  +    D +  QQAMI  E + V I+  G+ + + + S    D +    
Sbjct: 477 P------RLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKKISTRSYKASDENTFGK 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D L     A+T D IL  +  G    +P   L     +  G+ +  LI L +++ I+
Sbjct: 531 KDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFKWKDLGKHLSYLIKLGNDEKII 590


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 218/706 (30%), Positives = 394/706 (55%), Gaps = 41/706 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDH-MAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACE 478
            Q +AI++L+L  L         ++++ LL+EK++++        ++N+  +    I  E
Sbjct: 420 KQAEAIVSLQLYRL-------TNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
             +VK+ F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+
Sbjct: 473 FEDVKKEFGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSY 526

Query: 537 -SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            S D +      GD +       T   + + +  G     P   L+    R  G+ +   
Sbjct: 527 QSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQE 586

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
           I L +++ I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++ 
Sbjct: 587 IVLTNDERIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDD 646

Query: 650 MKLVVKV------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
              V+ V      + + + +V  N   L F ++++P +  R  GV+
Sbjct: 647 HSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 377/688 (54%), Gaps = 34/688 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA    +        
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+ +
Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDVNL 312

Query: 327 ESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + +  +
Sbjct: 313 ENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLNKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L 
Sbjct: 373 LLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLT 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   F 
Sbjct: 433 RTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFD 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHA 557
           E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      
Sbjct: 489 EFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVI 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL- 614
           ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K+ 
Sbjct: 547 NSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVD 606

Query: 615 ---LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V    K
Sbjct: 607 EHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISK 666

Query: 670 L---LIFSIDQIPEMSR-GKGVRLQSYK 693
           L   L+F + +I  ++R  KG+++   K
Sbjct: 667 LGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 283/462 (61%), Gaps = 11/462 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     +
Sbjct: 16  VEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P  G I+  R+ I ++Y  GRG    
Sbjct: 195 THNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPG-GGIIIGRQGIRDAYETGRGVVTT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D+ D      
Sbjct: 254 RSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH-NGT 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP  ++  +F  + ++  F +N   L  GR P  + L  +L  W+ HRR
Sbjct: 313 RIVIELKT-GFDPAAVLAQLFKHTPLQENFAINNVALVNGR-PHTLGLRSLLDVWIEHRR 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
            V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +     ++SRFSL + 
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           Q   IL+LRLR L K+   +++SE D L +   +++ +L S 
Sbjct: 431 QAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSA 472


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 218/699 (31%), Positives = 387/699 (55%), Gaps = 27/699 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +  + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAID-NMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSA 542
           F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+ S D + 
Sbjct: 480 FGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L+    R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
                 + + + +V  N   L F ++++P +  R  GV+
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 227/690 (32%), Positives = 379/690 (54%), Gaps = 38/690 (5%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA--RWCVEEVGRGS 265
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA   +   EV    
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQ 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324
             I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+
Sbjct: 258 --IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDV 310

Query: 325 LMESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            +E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + + 
Sbjct: 311 NLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLN 370

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
            +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +
Sbjct: 371 KVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHN 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   
Sbjct: 431 LTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKL 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIAL 555
           F E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L    
Sbjct: 487 FDEFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHN 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K
Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604

Query: 614 L----LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           +    LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V   
Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAI 664

Query: 668 RKL---LIFSIDQIPEMSR-GKGVRLQSYK 693
            KL   L+F + +I  ++R  KG+++   K
Sbjct: 665 SKLGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 218/706 (30%), Positives = 394/706 (55%), Gaps = 41/706 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDH-MAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACE 478
            Q +AI++L+L  L         ++++ LL+EK++++        ++N+  +    I  E
Sbjct: 420 KQAEAIVSLQLYRL-------TNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH 536
             +VK+ F  +     RRT   E  +  +   ++A++ +E + V++S  G+++  SL+S+
Sbjct: 473 FEDVKKEFGSA-----RRTQIVEQYKKIEID-EKALLSEEDVRVLVSANGYLKRSSLRSY 526

Query: 537 -SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            S D +      GD +       T   + + +  G     P   L+    R  G+ +   
Sbjct: 527 QSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQE 586

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
           I L +++ I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++ 
Sbjct: 587 IVLTNDERIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDD 646

Query: 650 MKLVVKV------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
              V+ V      + + + +V  N   L F ++++P +  R  GV+
Sbjct: 647 HSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 224/688 (32%), Positives = 376/688 (54%), Gaps = 34/688 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA    +        
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+ +
Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDVNL 312

Query: 327 ESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + +  +
Sbjct: 313 ENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L 
Sbjct: 373 LLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLT 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   F 
Sbjct: 433 RTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFD 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHA 557
           E  +A+    +  MIEK+ + +VIS  G+I+++   S + S    L  K  D L      
Sbjct: 489 EFIKAE--VNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVI 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL- 614
           ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +  +   K+ 
Sbjct: 547 NSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYACNEQFKVD 606

Query: 615 ---LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V    K
Sbjct: 607 EHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISK 666

Query: 670 L---LIFSIDQIPEMSR-GKGVRLQSYK 693
           L   L+F + +I  ++R  KG+++   K
Sbjct: 667 LGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 205/608 (33%), Positives = 353/608 (58%), Gaps = 21/608 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+KSA+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEAR+++++  +L+ +
Sbjct: 78  PHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRYTEARLSKISAELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   +++ + EPVV P+ FPNLL NG++GI+ G AT IP H++ EI +  +  +
Sbjct: 138 DKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLSEIIDGVIMQM 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           + P+ ++E L+  I GPDFPTGG IV+  + I ++YR G+G   VRA+  VEE+  G   
Sbjct: 198 EKPQTTLEDLMTVIKGPDFPTGG-IVQGIDGIKQAYRTGKGKVIVRAKTEVEELRGGRQQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           I +TEIPY+V K+ L++K+ EL   K++  + ++RD++    +RIV+  K  + D   ++
Sbjct: 257 ITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRIVVELKKEA-DAKAIL 315

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F  +D++  +  NM V    + P++M L  +++ ++ H++EV  RR+ + ++    R
Sbjct: 316 HYLFKNTDLQVTYNFNM-VAIHNKTPKLMGLQPLIQAYIDHQKEVATRRAQYDLKKAKDR 374

Query: 387 VEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             I+KGL+ A   +DE+IA IR ++DK   K  ++  +  +E Q +AI+ L+L  L   +
Sbjct: 375 QHIVKGLIKAISILDEVIATIRSSKDKKDAKENLIREYDFSEAQAEAIVTLQLYRLTNTD 434

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              ++ E   L     +++++L S K+    I   ++ VK+ F+       RRT   E  
Sbjct: 435 ITTLEEEAAELERRIHELEAILGSEKKLITVIKKGLQSVKKQFADP-----RRTVIKEEI 489

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKIALHAHTT 560
              K  +   ++  E + V ++  G+++  S++S++  +      KEGD L      +TT
Sbjct: 490 EEIKINM-DVLVASEDVMVTVTEEGYVKRTSIRSYTASNGEPPGMKEGDRLLDRFEMNTT 548

Query: 561 DRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
           D +LL +  G    +P  +L  +  + +G+ I  L+ ++ +  I+ A     +  +  LL
Sbjct: 549 DTLLLFTKLGSYLYVPVHHLPDIRWKDNGQHIANLVSVDRDDCILRAMPVKEFSESESLL 608

Query: 616 VVSSKGNA 623
            ++  G A
Sbjct: 609 FITKNGMA 616


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 158/313 (50%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVL 346
            ++T F +N+  L
Sbjct: 300 ALQTSFGINLLAL 312


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 226/690 (32%), Positives = 365/690 (52%), Gaps = 69/690 (10%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN      ++++N+K + ++  + + YL YA+S I  RA+PD RDG KP  RRI+ A
Sbjct: 1   MASDN--GEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++ L   ++  K A+I G+  G  HPHGD S+Y +LVRL Q +V R  LI  QGNFG+
Sbjct: 59  MNDLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + G   AA RYTEAR++ VA  +L  ++ + VDF  TY++ + EPVV PSKFPNLL NG+
Sbjct: 119 LAGLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP  N+ E+CEA   LIDNP+ +I+ +L+ + GPDFPTGGII   R  I 
Sbjct: 179 SGIAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIIC-GRYGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y  GR    +RAR    E  + S  IVVTEIPY   + R+ EK+  L+   R+  +  
Sbjct: 238 KGYATGRSTITLRARTHF-ETEKQSDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISR 296

Query: 301 IRDESAEDV-------RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           I D +  +V       +I+L    R  D ++++  +F  S ++  F + +  L +G  P+
Sbjct: 297 IVDLTDRNVPPWKVHLQIIL---KRDADKEVVLAQLFKFSPLQNTFSIILLAL-VGNRPE 352

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + +  ++++++ HR +V+ RR+ F +    +R   ++GL+IA ++IDE+I  IRN    
Sbjct: 353 TLSIKELIQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSR 412

Query: 414 KPVMVS-------------------------------RFSLTENQVDAILNLRLRSLRKL 442
               +S                                +SL+ NQ +AI++++L SL  L
Sbjct: 413 AEAKISLQGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANL 472

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++  E   LL    +   LL+      + I  ++  +++ +S      +RRT   E 
Sbjct: 473 EREKLSGEHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSD-----KRRTDISED 527

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554
              D    +  +I +EP+ V +S RG+I+  + ++          +      E D ++  
Sbjct: 528 ELTD--VNRDDLITEEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHL 585

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQ---DIVTAFVYD 609
             + T   +L ++  G+ Y     +L L GR   G A+  L+ L  ++   + V    +D
Sbjct: 586 FVSSTHSYLLFITNRGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFD 645

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               L++ +  G   I+++S + A +R  K
Sbjct: 646 EERFLVMATRNG---IIKKSPLSAYSRPQK 672


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 283/462 (61%), Gaps = 11/462 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     +
Sbjct: 16  VEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P  G I+  R+ I ++Y  GRG    
Sbjct: 195 THNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPG-GGIIIGRQGIRDAYETGRGVVTT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D+ D      
Sbjct: 254 RSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRH-NGT 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP  ++  +F  + ++  F +N   L  GR P  + L  +L  W+ HRR
Sbjct: 313 RIVIELKT-GFDPAAVLAQLFKHTPLQENFAINNVALVNGR-PHTLGLRSLLDVWIEHRR 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426
            V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +     ++SRFSL + 
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           Q   IL+LRLR L K+   +++SE D L +   +++ +L S 
Sbjct: 431 QAQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSA 472


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  337 bits (863), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 209/603 (34%), Positives = 349/603 (57%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  S+E LL  I GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S +
Sbjct: 420 AIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSDN 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ ILL +  G    LP   +  +  +  G+ +  L+ L  ++ ++ 
Sbjct: 534 EGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 158/378 (41%), Positives = 256/378 (67%), Gaps = 3/378 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAI 383
           AH+ E++ RR+ F ++ +
Sbjct: 358 AHQIEIITRRTQFDLEKL 375


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/320 (50%), Positives = 231/320 (72%), Gaps = 2/320 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQV 354
           ++T F +N+  L  G+ P+V
Sbjct: 300 LQTSFGINLLALVDGQ-PKV 318


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 219/707 (30%), Positives = 395/707 (55%), Gaps = 43/707 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDH-MAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWNQIACE 478
            Q +AI++L+L  L         ++++ LL+EK++++        ++N+  +    I  E
Sbjct: 420 KQAEAIVSLQLYRL-------TNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIR--SLKS 535
             +VK+ F  +     RRT   E  +  K  + ++A++ +E + V++S  G+++  SL+S
Sbjct: 473 FEDVKKEFGSA-----RRTQIVE--QYTKIEIDEKALLSEEDVRVLVSANGYLKRSSLRS 525

Query: 536 H-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
           + S D +      GD +       T   + + +  G     P   L+    R  G+ +  
Sbjct: 526 YQSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQ 585

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEE 648
            I L +++ I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++
Sbjct: 586 EIVLTNDERIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKD 645

Query: 649 KMKLVVKV------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
               V+ V      + + + +V  N   L F ++++P +  R  GV+
Sbjct: 646 DHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVK 692


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 225/688 (32%), Positives = 376/688 (54%), Gaps = 34/688 (4%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L  +
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNL 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            +D V F   +++ + EP + PS FPNLL NG +GIA G ATSIP HN  E+ +A +  I
Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+P+ SIEKL++    PDFPTGG I         +++ G G F +RA    +        
Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQ 257

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           I++  IPY+  K+ +I++I ++I  K +  L ++RDES A+ V I++  K      D+ +
Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK-----KDVNL 312

Query: 327 ESIFMLSDMETRFPLNMN---VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           E++      +T   ++ N   +  + R P ++ L   L   + H  +V+ +   + +  +
Sbjct: 313 ENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKV 372

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440
             R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L 
Sbjct: 373 LLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLT 432

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + + + +++E ++L  + + +   + S + + N +  ++ E K+ F       R+   F 
Sbjct: 433 RTDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFG----YQRKTKLFD 488

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHA 557
           E  +A+    +  MIEK+ + +VIS  G+I+ +   S + S    L  K  D L      
Sbjct: 489 EFIKAE--VNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELGLKTNDLLFYHNVI 546

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL- 614
           ++ DRIL++++  K   L A  +   R    GE +      + N+ +V  +V +   K+ 
Sbjct: 547 NSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVD 606

Query: 615 ---LVVSSKGNAFI-VEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
              LV+ SK N    +E +E+  N   K  + +K++  + +     +  DH   V    K
Sbjct: 607 EHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISK 666

Query: 670 L---LIFSIDQIPEMSR-GKGVRLQSYK 693
           L   L+F + +I  ++R  KG+++   K
Sbjct: 667 LGLVLMFLVHEINCLNRLAKGIKIMKLK 694


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 227/705 (32%), Positives = 381/705 (54%), Gaps = 58/705 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E+ L
Sbjct: 75  YHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARLAKLTQEVFL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+  VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 135 ADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHNLGEVIDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N EI+ ++L+++I GPDFPTGGI+V +++ ++  Y  G G  ++R +  VEE+  G
Sbjct: 195 AYMKNSEITTKQLMKHIKGPDFPTGGIVV-NKDDLLNIYETGSGKIKIRGKVEVEELKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V++EIPY +  +   + +  +A L+ +K+   + DI ++S+ E +RIVL  + +  
Sbjct: 254 KKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSKEGIRIVLELR-KDA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR-SSFR 379
           D + L   ++  + +E  F +NM  ++ G+ P+ M L  I++  +  + +V  R+  +  
Sbjct: 313 DVENLKNMLYKKTRLEDTFGVNMLAVANGK-PETMGLKSIIEHHVDFQFDVATRKYKTLL 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MV 418
            + +D++ EI +GL+ A   ID II I+R     K                       M 
Sbjct: 372 AKELDKK-EIQEGLIKACNVIDLIIEILRGSKSIKEAKACLTDGITENIKFKSNISKKMA 430

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S    TE Q  AIL +RL  L  LE   +++E +  L    + + +LN+       I  +
Sbjct: 431 SMLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARYEDILNNYDSMAEVIIED 490

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +  +K+ +++     +RRT    V  A++A  ++  IE++ +  ++   G+ R     +V
Sbjct: 491 LDAIKKTYAR-----KRRTI---VENAEEAVFEEKKIEEQEVVFLMDRFGYAR-----TV 537

Query: 539 DLSAL--HFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
           D+S    + +  DS  K  +    T +I L +  GK + +   ++  G  R  G  I  L
Sbjct: 538 DVSTYERNREAADSENKYIVSCLNTGKICLFTNAGKMHQVKVPDIPYGKFRDKGTPIDNL 597

Query: 594 IDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            + N  ++ +  FV D    S  KLL  + +G    V+ SE     R       +  +E 
Sbjct: 598 SNYNSTEEQI-VFVCDEGSLSMAKLLFATKQGMLKQVDGSEFQVAKRTIAATKLLEEDEV 656

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           + + V   G  + +   N   L F+  ++PE  +G    +G++LQ
Sbjct: 657 ICVQVVTEGQSIVLQTMNGYFLRFASTEVPEKKKGAVGVRGIKLQ 701


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 227/706 (32%), Positives = 386/706 (54%), Gaps = 37/706 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE ++        E+ ++ YAL+ +  RA+PD RDG KPV RRI+  M E G        
Sbjct: 11  EETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+V+   HPHGD +VYD+ VR+AQ F  RYPLI GQGNFG+IDGD+AAAYRYTE
Sbjct: 71  KSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSI 191
            R++ + EL+L+ ++++ V F  TY +  +  +PV  P++ P  + N +SGIAVG++T I
Sbjct: 131 MRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPP-ICNPSSGIAVGLSTDI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E   AA+AL+DNPE+++++L++ + GPDFPTGG I+ + + I      G+G   
Sbjct: 190 PPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGT-DGIRAYLESGKGRLV 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +R    +EE  R    +VVTEIP  + +SRL+  I   +   ++  + D+R+ES ++   
Sbjct: 249 IRGEVRLEEELR-QRNLVVTEIP-PISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGT 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEW 364
           RIV+    RS  P++++  ++  +D++T   +NM  L        R P+   +  +L+ W
Sbjct: 307 RIVV-ELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYW 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRF 421
             H+ +V+ RR+ ++++    R+ +++GL+I   + DEI+ I    R+ +  K  +  ++
Sbjct: 366 NRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVKY 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +LT+ Q D I N+ L  + +L+  +   E   L    +++ +LL S   +  ++A    E
Sbjct: 426 NLTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLAS---EAKKVALLKEE 482

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +  I  +  D   RRT      + + A++  ++IE+ PI +V S  G +++L  ++   +
Sbjct: 483 LTAIAQEHGD--DRRTRIDREGQEEIASV-ASLIEERPILIVASQSGRVKALPENAFKRA 539

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLID 595
            A     G+ L   + A T D +L+L+  G+ Y      +PAG   S    GE  Q +  
Sbjct: 540 RAGRTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRAS---SGEPAQKVFG 596

Query: 596 LNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEK-MK 651
           L  ++ + T   V + T    VV    N  + + S  E    T  G   L++  +++ + 
Sbjct: 597 LKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVA 656

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             +  +G    V+  N + L F+ D++    R G+GV   + K G 
Sbjct: 657 ATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGA 702


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/327 (49%), Positives = 235/327 (71%), Gaps = 2/327 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 181 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++
Sbjct: 240 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPL 357
             + ++T F +N+  L  G+ P+V+ L
Sbjct: 300 KQTALQTSFGINLLALVDGQ-PKVLNL 325


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/319 (50%), Positives = 229/319 (71%), Gaps = 1/319 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 183 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 331 MLSDMETRFPLNMNVLSMG 349
             + ++T F +NM  L  G
Sbjct: 302 KQTALQTSFGINMLALVDG 320


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 208/603 (34%), Positives = 349/603 (57%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  S+E LL  I GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S +
Sbjct: 420 AIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSDN 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  L+ L  ++ ++ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 159/316 (50%), Positives = 228/316 (72%), Gaps = 1/316 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGR 350
           ++T F +N+  L  G+
Sbjct: 300 LQTSFGINLLALVDGQ 315


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 213/703 (30%), Positives = 375/703 (53%), Gaps = 35/703 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++  +  I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVLGDK-GIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H   V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDH-MTPVQVGLKRILSSYLEHDEAVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+EI++GL+ A   +D++I  IR   N+   K  ++ +FS T  Q +AI
Sbjct: 364 RTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    + LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIANYNLLLTDRKVLEKQIIKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHFKEG 548
            G  R T      A     ++A++ +E + V++S  G+++  SL+S  S D S     + 
Sbjct: 479 -GSDRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTDDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D +       T   + L +  G     P   L+  +    G+ +   + L+ ++ IV+ F
Sbjct: 538 DKVVFEKTMSTLTNLYLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIVSVF 597

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                D     ++ ++ G    +  ++I    T K +  + +  ++    V+ V G    
Sbjct: 598 ELAKLDEKLNFVLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKQDTSRVIHVEG---- 653

Query: 663 VVGENRKLLI----------FSIDQIPEM-SRGKGVRLQSYKD 694
           VV + +K +           + I +IP   +R  GV+  + KD
Sbjct: 654 VVPDTKKEITLFTNQAYAVRYDISEIPTSGARAAGVKSVNLKD 696


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/407 (44%), Positives = 262/407 (64%), Gaps = 8/407 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +SN   +  V    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+G
Sbjct: 98  VKDSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELG 157

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D 
Sbjct: 158 LSSRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADP 217

Query: 126 AAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  + E ++L  ++ D VDF   +++   EP + P++ P LL NG+SGIA
Sbjct: 218 PAAMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIA 277

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +   ALI NPE ++++LLEY+ GPDFPTGG+I+     I+E+YR
Sbjct: 278 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIM-GNLGILEAYR 336

Query: 245 LGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            GRG   VR +  VE +   +    +++ EIPYQ  K+ L+EKIAEL+  K +  + DIR
Sbjct: 337 TGRGRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIR 396

Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DES    +RIV+  K R  DP +++ +++ L+ +++ F  NM  +  G+ P+ M L  +L
Sbjct: 397 DESDRSGMRIVIEVK-RGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQ-PKQMGLKDLL 454

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +     R  V+ RR+ F++     R  I++G++I   N+D +I II+
Sbjct: 455 QASY-FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIK 500


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/319 (50%), Positives = 229/319 (71%), Gaps = 1/319 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 183 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 331 MLSDMETRFPLNMNVLSMG 349
             + ++T F +NM  L  G
Sbjct: 302 KQTALQTSFGINMLALVDG 320


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 304/525 (57%), Gaps = 19/525 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     ++
Sbjct: 16  DRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA RYTE
Sbjct: 76  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAAMRYTE 135

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A E +L  + +D VDF   ++    EP V P++ P L+ NG +GIAVGMAT+IP
Sbjct: 136 TRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGIAVGMATNIP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +AL+  P++S EKLLE + GPDFPTGG ++     + ++Y  GRG   +
Sbjct: 196 PHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTG-SGVRDTYLTGRGSIPM 254

Query: 253 RARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EE+  G+G      +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES  
Sbjct: 255 RGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRDESDR 314

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  +P+ ++  +   + +++ +   +  L  G+ P  + L  +L+E+L +
Sbjct: 315 EGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVHGK-PIQLTLRQLLQEFLDY 373

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           R   L RR+   ++  + R+E+++GL+ A   + ++I +I           S      L 
Sbjct: 374 RELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMITAAPDAASARASLQVHLDLN 433

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DA+L + LR L  LE+  ++ E ++L  E+ ++  LL+      + +  E + +K+
Sbjct: 434 ERQADAVLAMPLRRLTGLEQESLRKEAEDLRQERARLRHLLDERPALLDAMVAEFKALKK 493

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            F+       RRT   E    D+   Q+   ++ P T V+  R +
Sbjct: 494 RFATP-----RRTRLVE--GGDELVAQRTAAQR-PNTEVLRQRAF 530


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 230/742 (30%), Positives = 398/742 (53%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF  D++ P   R  GV+  + K+    D +             AG+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE---DDYVA------------AGK 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N  + D L  + +RG V  L
Sbjct: 699 PLN-GDKDQLILVTQRGAVKRL 719


>gi|265983859|ref|ZP_06096594.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662451|gb|EEZ32712.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 269

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/269 (56%), Positives = 202/269 (75%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R++K H  D S
Sbjct: 1   MREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFS 60

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I++L+D+ ++QD
Sbjct: 61  TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQD 120

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           I+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ KL  +V+GDH+
Sbjct: 121 ILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHI 180

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W DSA R++NR
Sbjct: 181 AVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNR 240

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 241 SKEELVEWIGARASAGRLVPKGFPRSGKF 269


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 230/742 (30%), Positives = 398/742 (53%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF  D++ P   R  GV+  + K+    D +             +G+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE---DDYVA------------SGK 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N  E D L  + +RG V  L
Sbjct: 699 PLN-GEKDQLILVTQRGAVKRL 719


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 222/697 (31%), Positives = 386/697 (55%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL ++ G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 230/731 (31%), Positives = 390/731 (53%), Gaps = 50/731 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LI +P  S++KL+E+I GPDFPT G I++  + I ++Y+ GRG   VRA+ 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPT-GGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +    
Sbjct: 245 EIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E++ RR+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEIIRRRT 363

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+ 
Sbjct: 364 QYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIVT 423

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  ++K E + L +   +   +L +  +    +  EIR +K+ F      G
Sbjct: 424 LQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEF------G 477

Query: 494 RRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFK 546
             R T  E  V + +  T  +  +  E + V++S+ G+     IRS K+   + + L  +
Sbjct: 478 NPRRTKIENLVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL--R 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVT 604
           E D   +    +T   + + +  G     P   +   R    GE I   I L  N++I+ 
Sbjct: 534 EDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIK 593

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-----VVKV 656
           A ++D   +   +++ +S G        +   N  K  +  K  +   +KL     VV V
Sbjct: 594 AMIFDKLDQPGTIIMGTSDGQV-----KQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNV 648

Query: 657 TGDHVAVVGENRKLLIFS---------IDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKI 705
             D+     ENR LL  S         +  +P    R  GVR  + KD   ++D I  K 
Sbjct: 649 --DYYEPTNENRSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQILVKD 706

Query: 706 CEGLTWIDSAG 716
            + +  I   G
Sbjct: 707 GQDIAVITQRG 717


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVSNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 231/705 (32%), Positives = 375/705 (53%), Gaps = 58/705 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 16  MKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+T+   E+ L
Sbjct: 76  YHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEVCL 135

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP+V P + PNLL NG  GIAVGMATSIP HN+ E+ +A  
Sbjct: 136 ADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATSIPPHNLGEVIDAVK 195

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A I N  I+ ++L++YI GPDFPTGGI+V +++ ++  Y  G+G  +VR +   EE+  G
Sbjct: 196 AYIKNDSITTKQLMKYIKGPDFPTGGIVV-NKDDLINIYETGQGKIKVRGKVETEELKGG 254

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V++EIPY +  +   + +  +A L+  K+   + DI ++S+ E +RIVL  K +  
Sbjct: 255 KKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKEGIRIVLELK-KGA 313

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  R E+  R+    +
Sbjct: 314 DVENLKNMLYKKTRLEDTFGVNMLAVADGR-PETLGLKKIIEHHVDFRFELATRKYKTLL 372

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                + E+ +GL+ A   ID II I+R     K                       M  
Sbjct: 373 AKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLVNGVTDNIKFKSSISKKMAV 432

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   + +E +  +    + + +LN+       I  E+
Sbjct: 433 LLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIARYEDILNNYDSMAQVIVEEL 492

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              KE ++K+     RRT    +  A++A  ++  IE++ +  ++   G+ R +    V 
Sbjct: 493 ESFKEEYAKA-----RRTV---IENAEEAVFEEKKIEEQEVVFLMDRFGYARIV---DVA 541

Query: 540 LSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
           +   + +  DS  K  +H   T +I + +  GK + +   +L  G  R  G  I  + + 
Sbjct: 542 VYERNKEAADSENKYIVHCMNTGKICIFTNSGKMHQVKVIDLPYGKFRDKGVPIDNVSNY 601

Query: 597 NHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + + + + + VYDS       LL  +++G    V  SE     R   T L    +E+  L
Sbjct: 602 SSSDEQIVS-VYDSEQMRFAMLLFSTAQGMVKKVSGSEFQVAKR---TILATKLQEEDSL 657

Query: 653 V-VKVTGD--HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
           V V+V  +  HV +  +N   L F   ++P   +     +G+RLQ
Sbjct: 658 VDVRVVNENKHVVLQTKNGYFLRFPATEVPIKKKAAVGVRGIRLQ 702


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 343/603 (56%), Gaps = 20/603 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LI +P  S++KL+E+I GPDFPT G I++  + I ++Y+ GRG   VRA+ 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPT-GGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +    
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E++ RR+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEIIRRRT 363

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+ 
Sbjct: 364 QYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIVT 423

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F       
Sbjct: 424 LQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGNP---- 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFKEG 548
           RR      V + +  T  +  +  E + V++S+ G+     IRS K+   + + L  +E 
Sbjct: 480 RRTKIENHVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL--RED 535

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D   +    +T   + + +  G     P   +   R    GE I   I L  N++I+ A 
Sbjct: 536 DYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAM 595

Query: 607 VYD 609
           ++D
Sbjct: 596 IFD 598


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 332/566 (58%), Gaps = 25/566 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KSARIVG+V+GK
Sbjct: 32  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKSARIVGDVMGK 91

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM++ A L+  
Sbjct: 92  YHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSREAMLLTG 150

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN+ E+ +AA  
Sbjct: 151 ELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVQAARW 210

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGR 263
           LI++P+ +++KL+E++ GPD PTGG+++   E +  +Y  GRG  R+R R  +   E  R
Sbjct: 211 LINHPDATLDKLMEFVPGPDLPTGGLLLGLDE-VRRAYETGRGVVRMRGRVEIGPLEGSR 269

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSL 320
           G   I VTE+PY V   ++I  I  E+   KR+  + D++D  +     R+V+  K   +
Sbjct: 270 GRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTRLVVECKV-GV 328

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L  +LAHR EV+ RRS++R 
Sbjct: 329 NPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKELLDVFLAHRYEVVTRRSAYRK 387

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR-NED--KPKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R+ ++ GLLIA L+ID ++ +IR +ED    K  ++ RF L+E Q   IL+  LR
Sbjct: 388 RKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQATYILDTPLR 447

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F        RRT
Sbjct: 448 RLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGAP-----RRT 502

Query: 498 TFC--EVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLSALHFKEG----D 549
           T    ++     A++    +E   +P  V++S  G +    + S + +    + G    D
Sbjct: 503 TLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEARRRSGRVKHD 562

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTL 575
           +++  +H+    R+LL+++ G+A+ +
Sbjct: 563 AVRAIVHSTARGRVLLVTSAGRAFKI 588


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/320 (50%), Positives = 230/320 (71%), Gaps = 2/320 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQV 354
           ++T F +N+  L  G+ P+V
Sbjct: 300 LQTSFGINLLALVDGQ-PKV 318


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 343/603 (56%), Gaps = 20/603 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LI +P  S++KL+E+I GPDFPT G I++  + I ++Y+ GRG   VRA+ 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPT-GGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +    
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + + ++  +   +D++  +  NM  +   R P  + L  IL  +L  ++E++ RR+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKRILTSYLEFQKEIIRRRT 363

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+ 
Sbjct: 364 QYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIVT 423

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F       
Sbjct: 424 LQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGNP---- 479

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFKEG 548
           RR      V + +  T  +  +  E + V++S+ G+     IRS K+   + + L  +E 
Sbjct: 480 RRTKIENHVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGL--RED 535

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D   +    +T   + + +  G     P   +   R    GE I   I L  N++I+ A 
Sbjct: 536 DYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAM 595

Query: 607 VYD 609
           ++D
Sbjct: 596 IFD 598


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 231/710 (32%), Positives = 382/710 (53%), Gaps = 68/710 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 17  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+T+   E  L
Sbjct: 77  YHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEAYL 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   ++E + EP+V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 137 GDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIPTHNLSEVLDAVK 196

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +IS ++L+ YI GPDFPTGGI+V +++ ++  Y  G+G  ++R +  VEE   G
Sbjct: 197 AYMKNDQISTKQLMRYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIKIRGKVEVEEQKGG 255

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  S   + +  +  L+ +K+   + DI ++S+ E +RIVL  K +  
Sbjct: 256 KKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKEGIRIVLELK-KGA 314

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++  R P+ + L  I++  +  + E++ R+ +  +
Sbjct: 315 DVENLKNMLYKKTRLEDTFGVNMLAVANDR-PETLGLKAIIEHHVDFQFELMTRKYTTML 373

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                R E+ +GL+ A   ID II I+R     K                       M +
Sbjct: 374 AKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVSGVTENIKFKSSISKKMAA 433

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+     N I    
Sbjct: 434 LLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISRYEDILNNYDSMANLI---- 489

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             ++E+ S   + GR+R T  E   A++A  ++  IE++ +  ++   G+     + ++D
Sbjct: 490 --MEELDSYKREYGRKRRTAIE--NAEEAVFEEKKIEEQEVVFLMDRFGY-----AKTID 540

Query: 540 LSALHFKE--GDSL-KIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQ 591
           ++A    +   DS  K  +H   T +I + +  G+ +      LP G     R  G  I 
Sbjct: 541 VTAYERNKEAADSENKYVVHCMNTGKICIFTDTGRMHQAKVLDLPYGKF---RDKGTPID 597

Query: 592 LLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSS 646
            L + + +++ +   V D+      KLL  + +G    VE +E  +A      T L+   
Sbjct: 598 NLTNYSSSEEQI-VMVCDAEQMRFAKLLFATKQGMIKKVEGTEFQVAKRTIAATKLQ--- 653

Query: 647 EEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSRG----KGVRLQ 690
           EE + + V V  ++  +V + +    L F  ++IPE  +G    +G++LQ
Sbjct: 654 EEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPEKKKGAVGVRGIKLQ 703


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKKLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/372 (47%), Positives = 257/372 (69%), Gaps = 8/372 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++ L   +++ YL YA+S I  RA+PD+RDG KPV RR+++AMSE+GL   +A+KK
Sbjct: 36  ERILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLYAMSELGLRHNSAYKK 95

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD S+YD++VRLAQ +  RY L+ GQGNFG++DGD AAA RYTEA
Sbjct: 96  SARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFGSVDGDRAAAMRYTEA 155

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++ EL+L  +DED V++   ++E   EP+  PS  PNLL NG++GIAVGMAT+IP H
Sbjct: 156 RLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNGSTGIAVGMATNIPPH 215

Query: 195 NVQEICEAALALID---NP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +    L++   NP E S+  L+E + GPDFPTGG I+  R+ I ++YR GRG  
Sbjct: 216 NLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQIL-GRQGIYDAYRTGRGKV 274

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            VR R  VE+  RG   ++VTEIPY V K+ LIE + +    K I  ++DIRDES  E +
Sbjct: 275 IVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVIDGIQDIRDESNREGM 334

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIVL   +R  +PDL+M  ++  + ++  F + +N+    + P+++PL  IL  +L++RR
Sbjct: 335 RIVLE-LSRDANPDLVMRQLYKRTQLQATFGV-INLALDRQTPRLLPLASILGLFLSYRR 392

Query: 370 EVLFRRSSFRMQ 381
           +V+ RR+ FR+ 
Sbjct: 393 DVVRRRTQFRLN 404


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/505 (38%), Positives = 293/505 (58%), Gaps = 18/505 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   +   +L YA S I  RA+PD RDG KPV RRI++ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLPNRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ S++ L+EY+ GPD+P  G I+  R+ I ++YR GRG    
Sbjct: 196 THNLGEVVAAAKYVMKHPDASLDTLMEYVPGPDWPG-GGIIIGRDGIRDAYRDGRGTVTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           RA   +E V      IVVTE+PY V   R++E+I+E +   ++  +    D+ D      
Sbjct: 255 RATTHMENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRH-NGT 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DPD ++  +   + ++  F +N   L  GR P  + L  +L  W+ HRR
Sbjct: 314 RIVIEIKT-GYDPDAVLVQLLKHTPLQENFTINNVALVDGR-PHTLGLRAMLDVWIDHRR 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS +R      R+ ++ GLL+A ++IDE+I +IR   + D  K  ++  F L + 
Sbjct: 372 NVIRRRSEYRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQVFDLDDI 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   IL+LRLR L K+   ++++E D+L     +++ +L S +     +  E+ E    +
Sbjct: 432 QAQYILDLRLRRLTKMSRIELETERDDLRRSIAELEGILASAQALDEVVVREMDEAVAAY 491

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ 511
           +       RRT   +   AD  TL 
Sbjct: 492 NTP-----RRTVLLDT--ADDGTLH 509


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 231/742 (31%), Positives = 404/742 (54%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            +RS + ++  + R  I++GL+ A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TKRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALEKEADELSTKIAELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  L+ L  ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF  D++ P   R  GV+  + K+    D +             +G+
Sbjct: 654 SDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKE---DDYVA------------SGK 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N  E D L  + +RG V  L
Sbjct: 699 PLN-GEKDQLILVTQRGAVKRL 719


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 215/620 (34%), Positives = 356/620 (57%), Gaps = 28/620 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G  +   ++KSA+ V
Sbjct: 16  MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYTEAR++ +
Sbjct: 76  GNVIGNYHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP HN++E+
Sbjct: 136 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258
            +A +  I  P  S+EKL+E+I GPDFPTG  IVE ++ I+ +++ GRG   VR+    +
Sbjct: 196 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGA-IVEGKQGILNAFKSGRGKVIVRSTSEMI 254

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE  +    IV+TEIPY+V K+ L+ KI E+   + I  + ++RDES    +RIV+  K 
Sbjct: 255 EE--KTMNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLK- 311

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + ++    +  ++  +D++  +  NM  +   R P +M +  IL  ++AH+ +V+ R S 
Sbjct: 312 KDINVQNTLNYLYKNTDLQKNYNYNMVAIKDKR-PVLMGVIEILDGYIAHQIDVVTRSSI 370

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNL 434
             +   + R  I++GL+ A   +DE++  IR ++DK   K  ++ ++  +E Q +AI+ L
Sbjct: 371 HDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYGFSEKQAEAIVML 430

Query: 435 RLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +L  L   +   +++   ELDN +A    ++++LNS +     I  +++ +K+ +     
Sbjct: 431 QLYRLTNTDIVTLENENKELDNRIA---YLNNILNSDEVLRKVIIDQLKGIKKKYPMPR- 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHF--KEG 548
           L + R    E+   +K     AMI  E I V I+  G+I+ + + S+  S  + F  KE 
Sbjct: 487 LSKIRDEVQEIKIDEK-----AMILSEDINVSITRDGYIKRISNRSIKASEGIPFGKKEN 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV-TA 605
           D L     A+T D +LL +  G    +P   +     +  G+ +  L+ LN  + I+ T 
Sbjct: 542 DYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVKLNAGEKIIGTI 601

Query: 606 FVYDSTCKLLVVSSKGNAFI 625
            V D    L V+ +  N  I
Sbjct: 602 LVKDFNLPLYVMLATKNGQI 621


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/456 (40%), Positives = 284/456 (62%), Gaps = 12/456 (2%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +L+ +DE+ VDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN++E+ +A    ++N +   E
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 216 KLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           + L  ++    GPDFPT G+IV S +   ++Y+ GRG  R+R    VEE  RG   +V+T
Sbjct: 184 ETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVIT 242

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESI 329
           E+PYQV     I  IAE +   ++  + +I D+S++ V  RIV+  K R     +++ ++
Sbjct: 243 ELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIK-RDAVAKVVINNL 301

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  +  G VP+ + LD +++ ++ H+ +V+ RR+++R++  + R  I
Sbjct: 302 YKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHI 360

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GL+ A   +DE+IA+IR     D  +  ++    + E Q  AIL+++LR L  LE  +
Sbjct: 361 LRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQR 420

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           I  +L  + AE   ++ +L   ++Q   +  E+ E+
Sbjct: 421 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEI 456


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNM 343
           ++T F +N+
Sbjct: 300 LQTSFGINL 308


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 229/742 (30%), Positives = 397/742 (53%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      F+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKVFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANSEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  +K       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF  D++ P   R  GV+  + K+    D +             +G+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE---DDYVA------------SGK 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N  E D L  + +RG V  L
Sbjct: 699 PLN-GEKDQLILVTQRGAVKRL 719


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 352/599 (58%), Gaps = 20/599 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           EGD L      +TT+ +LL ++ G    LP   +  +  +  G+ +  ++ L+ ++ I+
Sbjct: 534 EGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVQNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 219/697 (31%), Positives = 383/697 (54%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 352/599 (58%), Gaps = 20/599 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           EGD L      +TT+ +LL ++ G    LP   +  +  +  G+ +  ++ L+ ++ I+
Sbjct: 534 EGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 207/603 (34%), Positives = 352/603 (58%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  L+ L  ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 206/655 (31%), Positives = 367/655 (56%), Gaps = 33/655 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++EN+  V     + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     
Sbjct: 16  IIQENLDTV-----VADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RY
Sbjct: 71  FKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +
Sbjct: 131 TEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEM 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+A + NP I + KL + I GPDFPTGGII  + E I E++  G+G   
Sbjct: 191 PPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGT-EGIHEAFERGKGRIT 249

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           + +R+ V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   
Sbjct: 250 LASRYNVYTDSKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGIN 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L   ++  D ++++  +F+ + M   +  N NV+     P+ + +  +L  +L H +++
Sbjct: 309 ILITLDKEADENVIVNYLFLKTQMRIYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDI 367

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQ 427
             +   F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ
Sbjct: 368 KIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L K +E+    E + L  + ++ + LLN   +    +    +++K  F 
Sbjct: 428 ATAIAELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKF- 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALH 544
                GR R T  E  +   +  Q+ ++++E + + IS  G+I+  S K +  +L +   
Sbjct: 487 -----GRARRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYG 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D++    +A + D++LL +  G    LP   +     +  G  +   +DL   +++
Sbjct: 542 IKEDDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEEL 601

Query: 603 VTAFV---YDSTCKLLVVSSKGNA--FIVEESEIIANTRKGKTF--LKVSSEEKM 650
           V+A     +DS+  + + + KG     +++E ++   +R  KTF  +K+ S++++
Sbjct: 602 VSAIKVSDFDSSNYVCLFTKKGQGKKVLLKEFDV---SRFSKTFVAMKLKSDDEL 653


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 233/742 (31%), Positives = 403/742 (54%), Gaps = 43/742 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  I GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVIKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINHRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L  +  ++ S+L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ ILL +  G    LP   +  +  +  G+ +  L+ L  ++ ++ 
Sbjct: 534 EGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVTLERDETLIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ +++ ++V     D  
Sbjct: 594 ATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       LIF  D++ P   R  GV+  + K+    D +             +G+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE---DDYVA------------SGK 698

Query: 718 SYNRSENDLLGWLGKRGGVGSL 739
             N  E D L  + +RG V  L
Sbjct: 699 PLN-GEKDQLILVTQRGAVKRL 719


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 347/603 (57%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 213/703 (30%), Positives = 390/703 (55%), Gaps = 31/703 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G     
Sbjct: 2   SLPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG VIG  HPHGD SVY+++VR++Q F  R  LI   GN G++DGD  AA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTEARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI EA +  +D P+ S+  +++ + GPDFPT G I++  + I ++Y  G+G  
Sbjct: 182 IPPHNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR++  VE++  G   I + EIPY+V K+ L+++I EL I KRI  + ++RDE+     
Sbjct: 241 IVRSKTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  +++H++E
Sbjct: 301 RIAVELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKR-PELMGIIAMLDAYISHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQ 427
           ++ +RS + ++    R  I++GL+ A   +DE+I +IR ++DK   K  +   +  +E Q
Sbjct: 360 IITKRSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQTYQFSERQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   + + +  E   L A+ + ++ +L    +    +  E+ E+K+ + 
Sbjct: 420 AEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKILGDEGELVKTLKAELTEIKKNYK 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LH 544
                   R T  E   A+    ++ ++  E + V ++  G+++     S   S    L 
Sbjct: 480 TP------RLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKRTSYRSYTASKGDELA 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQD 601
            KE D        +T D +LL ++ G     P   L  +  +  G+ +  ++ ++   ++
Sbjct: 534 MKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPDIRWKNLGDHVSHIVTEMGSGEE 593

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLV 653
           ++ A      + T KL+ ++  G    + +  +IAN R     K    +K+ +++K+  V
Sbjct: 594 VIQALPLSKANETQKLVFLTQAG----MTKVSLIANYRPQRYSKAMMAIKLKADDKLLNV 649

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
               G + + +   N   L + I +IPE  +R  GV+  + K+
Sbjct: 650 AVADGSEDIFIATRNGYGLRYPITEIPESGTRTAGVKAINLKE 692


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 159/322 (49%), Positives = 232/322 (72%), Gaps = 2/322 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 240 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQV 354
           + ++T F +N+  L  G+ P+V
Sbjct: 300 TALQTSFGINLLALVDGQ-PKV 320


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 347/603 (57%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQAE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                 R    E    +     + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 ------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/322 (49%), Positives = 232/322 (72%), Gaps = 2/322 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I
Sbjct: 122 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 181

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 182 TIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 240

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 241 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 300

Query: 333 SDMETRFPLNMNVLSMGRVPQV 354
           + ++T F +N+  L  G+ P+V
Sbjct: 301 TALQTSFGINLLALVDGQ-PKV 321


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 232/644 (36%), Positives = 341/644 (52%), Gaps = 62/644 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  GA   K A+I G+  G 
Sbjct: 34  LKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISGDTSGN 93

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ +  R+ LI  QGNFG+I G   AA RYTEAR++ VA ++L+
Sbjct: 94  YHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEARLSPVASMMLE 153

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF  TY+E + EP V P +FPNLL NG  GIAVGMATSIP HN+ E+CEA + 
Sbjct: 154 DLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVCEALVK 213

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+PE+++ +L E I GPDFPTGG I   R  I   YR GR    +RA+  +EE  +  
Sbjct: 214 VIDDPEVTLGELCEIIKGPDFPTGGTIC-GRAGIRRGYRDGRSTIVLRAKTRIEEHKKDR 272

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323
           + I++TEIPYQ  + R++EKIAEL+  +RI  +  I D S   E V +V+  K R  DP 
Sbjct: 273 YRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIK-RDADPY 331

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  S ++    + +  L  G+ P+ + L  +L+E+L HR  V+ RR+ F +   
Sbjct: 332 VVLNQLYQFSPLQDSISIILLALVDGK-PRELSLKELLEEFLRHRVTVIRRRTQFLLSKA 390

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE-------------DKPKPVM------------- 417
            RR   ++GLL+A  NIDEII IIR               + P  +M             
Sbjct: 391 RRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQRALGEEGFAMFQ 450

Query: 418 -----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                   + LT  Q +AIL + L  L  LE+ ++  E   LL E  +   +L       
Sbjct: 451 SERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRIL----ADE 506

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530
           N I   I+E  E+ + +   G  R T           L+  +I +E + V IS+RG+I  
Sbjct: 507 NIIRAMIKE--ELIAIAAKYGDERRTEISGEEIGDVNLED-LITEETMVVSISHRGYIKR 563

Query: 531 ------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
                 R+ +     L     ++ D +     A T   +L  +  G     K Y LP   
Sbjct: 564 TPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPE-- 621

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            LS    G AI  L++L+  + I        +D     L+++++
Sbjct: 622 -LSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATR 664


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 223/697 (31%), Positives = 384/697 (55%), Gaps = 27/697 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  S++ LL  I GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDQPNSSVDDLLAVIKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K  +    +L    ++  + + + P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELKKEANAEGILN---YLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + +RF  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSARFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E   L  +  ++ ++L S K+    I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALEQEAAELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEEIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  ++ L+ ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETIIW 593

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-- 659
           A V   ++   + +V  ++       E       R  + F+ V+ ++  ++V     D  
Sbjct: 594 ATVIPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGT 653

Query: 660 -HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKD 694
             + +       LIF  D++ P   R  GV+  + K+
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKE 690


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 349/615 (56%), Gaps = 22/615 (3%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+ VG VIG  H
Sbjct: 18  DRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYH 77

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++ +A  +L+ +
Sbjct: 78  PHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDI 137

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ E+ +A +  I
Sbjct: 138 DKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRI 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             P  S+++L+E I GPDFPT G I++  + I ++Y  G+G   +R +  +E +  G   
Sbjct: 198 QMPSCSVDELMEVIKGPDFPT-GGIIQGIDGIRKAYETGKGKIIIRGKAEIETIRGGREQ 256

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    +  D   ++ 
Sbjct: 257 IVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILN 316

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  +D++  +  NM V    R P +M L  IL  ++ H++EV+  RS + +Q    R 
Sbjct: 317 FLYKNTDLQITYNFNM-VAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRH 375

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            I++GL+ A   +DE+IA IR + DK   K  +++++  TE Q +AI++L+L  L   + 
Sbjct: 376 HIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRLTNTDI 435

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +K E + L  + E+++S+L++ K+    I   ++ +K+ ++ +     RR+   E   
Sbjct: 436 TALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADT-----RRSVIEEKIE 490

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561
             K  L + M+  E + V ++  G+++     S   S       K+ D +      +TTD
Sbjct: 491 EIKINL-EVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQFEMNTTD 549

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLV 616
            +LL +  G     P   L  +  +  G+    LI ++ ++ IV A     +D +  LL 
Sbjct: 550 VLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLF 609

Query: 617 VSSKGNAFIVEESEI 631
            +  G   +V+++E+
Sbjct: 610 FTKNG---MVKKTEL 621


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 163/359 (45%), Positives = 244/359 (67%), Gaps = 8/359 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW++ RR+
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRK 361


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 218/615 (35%), Positives = 341/615 (55%), Gaps = 51/615 (8%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RAIPD RDG KPVHRRI++AM ++ L      +K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDE 149
           D +VYD+LVRLAQ F   YPLI G GNFG+ID D AAA RYTE R+T++++  +L+ + +
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID- 208
           D VDF   ++  + EP V P+K P LL NG+SGIAVGMAT+IP HN+ EI  A  AL+  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 209 ---NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--GR 263
                 ++ +KLL+ + GPDFPTG  I+ S     + Y  G GG  +RA   +E++  GR
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASIL-STGGTEKLYTTGNGGIVMRAVTKIEKITTGR 239

Query: 264 GS----WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
            S      I+VTE+PYQV K+ L+EKIA L+  K++  + D+RDES  D +R+V+  K R
Sbjct: 240 KSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELK-R 298

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVL-------SMGRVPQVMPLDGILKEWLAHRREV 371
                +++ +++  + ++T F  N   L       S   VPQ   L   +  +L  R E 
Sbjct: 299 DAVAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFET 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + R+S F++  ++ R  I+ GLL+A   +D +I I+R   ++   +  +      +  Q 
Sbjct: 359 IRRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSEQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS- 487
           DAIL L+L  L +L + +++SE  +L   +E +  LL      ++ +  E  ++ + F  
Sbjct: 419 DAILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRFGG 478

Query: 488 --KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSAL 543
             KS+ +      FC++           +IE     +V++  G+I+   LK+        
Sbjct: 479 ERKSSIIVEDDGDFCDMD----------LIENSRSVIVVTRGGYIKRMPLKTFESQGRGT 528

Query: 544 HFKEGDS---------LKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQL 592
             K G S         +      +  D +L+++ +G AY L A  + ++GR   G+ I  
Sbjct: 529 RGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPS 588

Query: 593 LIDLNHNQDIVTAFV 607
           ++ +  ++ ++TA +
Sbjct: 589 VLPVRGDE-VITAIL 602


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 156/306 (50%), Positives = 223/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 123 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 242 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 301

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 302 INLLAL 307


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/603 (34%), Positives = 353/603 (58%), Gaps = 20/603 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4   EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYTEA
Sbjct: 64  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 124 RLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++Y  G+G   +R 
Sbjct: 184 HLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKAYETGKGKIIIRG 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+    +RIV+
Sbjct: 243 KAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVL 372
             K + ++ + ++  ++  +D++   P N N++++  R P +M L  IL  ++ H++EV+
Sbjct: 303 ELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVD 429
            RRS + ++  + R  I++GL  A   +DE+I  IR ++DK   K  + ++F  TE Q +
Sbjct: 360 TRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQSE 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E D L  +  ++ S+L S ++  + I  +++ VK+ +S  
Sbjct: 420 AIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEQRLLHVIKTDLKRVKKTYSDD 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFK 546
                RR    E     K  + + MI +E + V ++  G+++    +SH+  +      K
Sbjct: 480 -----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMK 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD L      +TT+ +LL +  G    LP   +  +  +  G+ +  L+ L  ++ I+ 
Sbjct: 534 EGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIW 593

Query: 605 AFV 607
           A V
Sbjct: 594 ATV 596


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 238/754 (31%), Positives = 403/754 (53%), Gaps = 67/754 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 16  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKSARIVGDTMGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YDSLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+T+   E+ L
Sbjct: 76  YHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEVCL 135

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ +DF   ++E + EP+V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 136 ADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATSIPTHNLCEVVDAVK 195

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +I+ ++L++YI GPDFPTGGI+V +++ +   Y  G+G  ++R +  VEE+  G
Sbjct: 196 AYMKNDKITTKQLMKYIKGPDFPTGGIVV-NKDDLPAIYESGQGKIKLRGKVEVEELKGG 254

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+ +K+   + DI ++S+ E +RIV+  K R  
Sbjct: 255 KKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKEGIRIVIELK-RGA 313

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+ +  +
Sbjct: 314 DVENLKNMLYKKTRLEDTFGVNMLAVANGR-PETLSLKQIIEHHVDFQFELATRKYTTLL 372

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                + E+ +GL+ A   ID II I+R     K                       M +
Sbjct: 373 GKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENIKFKSAISKKMAA 432

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+    ++ +A  I
Sbjct: 433 MLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIARYEDILNN----YDSMAGVI 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  E+ S   + GR+R T  E   A++A  ++  IE++ +  ++   G+ +++ +   +
Sbjct: 489 ME--ELDSYKKEFGRKRRTVVE--NAEEAVFEEKKIEEQQVVFLMDRFGYAKTVDTGVYE 544

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
            +     + +  K  +H     ++ L + +GK + +   +L  G  R  G  I  + + +
Sbjct: 545 RNKEAADKEN--KYIVHCMNIGKLCLFTDEGKMHQVKVLDLPHGKFRDKGIPIDNVSNYS 602

Query: 598 HNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV- 653
            +++ +     +      KLL  +++G    V+ SE   + R   T      +E+ +LV 
Sbjct: 603 SSEEQIVMICEEEQMRYSKLLFATAQGMIKRVDGSEFQVSKR---TIAATKLQEEDRLVA 659

Query: 654 VKVTGDHVAVV--GENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707
           VKV  ++  VV   +N   L F    +PE  +     +G++LQ  K   + +V  F+  E
Sbjct: 660 VKVVTEYQNVVLQTKNGYFLRFLSADVPEKKKAAVGVRGIKLQ--KKDELEEVYLFE--E 715

Query: 708 GLTWIDSAGR---SYNRSENDLLGWLGKRGGVGS 738
           G     + G    S NR +      L KR G G+
Sbjct: 716 GTETKITYGEKTVSLNRLK------LAKRDGTGT 743


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 156/304 (51%), Positives = 222/304 (73%), Gaps = 1/304 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DMET 337
            ++T
Sbjct: 300 ALQT 303


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/316 (50%), Positives = 226/316 (71%), Gaps = 1/316 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+    EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGR 350
           ++T F +N+  L  G+
Sbjct: 300 LQTSFGINLLALVDGQ 315


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/314 (50%), Positives = 227/314 (72%), Gaps = 2/314 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 123 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 242 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 301

Query: 341 LNMNVLSMGRVPQV 354
           +N+  L  G+ P+V
Sbjct: 302 INLLALVDGQ-PKV 314


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 216/694 (31%), Positives = 363/694 (52%), Gaps = 30/694 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + +D VD    +++   EP V PS+ P+LL NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+PE     L+ YI GPDFPTGGII +  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPEAPQSALMRYIKGPDFPTGGII-QGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTAISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             N+  + + ++  +F  +D++  +  NM  +   R P  + L   L+ ++A R+EV+ +
Sbjct: 302 ELNKDTNANGILTYLFKKTDLQIAYNFNMVAIHDQR-PVHVSLKQALEAFIAFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR   N       +++RF  T+ Q +AI
Sbjct: 361 RSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIARFDFTQPQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L    EKI+ L     ++   +   IR+     ++   
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFAAL---TEKINHLTEVMNEEM-ALKAVIRDEITAITQKYQ 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549
             RR     EV   D    +   I +E + V++S  G+ +  S++S+          + D
Sbjct: 477 SARRSQIEAEVE--DLVIDKAVTIAEEDVQVLVSRNGYYKRASIRSYKASDKDNGLADDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                   +TT  + + +  G     P   L   R    GE     +     ++ V   V
Sbjct: 535 LPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRWKDTGEHFSQELSNWRTEEYVIKVV 594

Query: 608 YDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +T +      +V++ G       S+++    K KT + +  +     V  V  D+   
Sbjct: 595 PINTLEQGGAFTIVTNDGFIKQTTLSDMLPKAYKKKTSMAIKLKTDDSYV--VNADYFET 652

Query: 664 VGENRKLLI--------FSIDQIPEM-SRGKGVR 688
           VG+   LL+        F++  IPE+ +R  GV+
Sbjct: 653 VGQQDVLLLSQHGVGLRFAVKSIPEIGARTAGVK 686


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 216/582 (37%), Positives = 329/582 (56%), Gaps = 37/582 (6%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+   HPHGD SVYD+LVRLAQP+V RYPLI  QGNFG++DGDSAAAYRYTE R
Sbjct: 2   AGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTECR 61

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +AE +L  ++ED VDF   YNE  +EP V PS  PNLL NG++GIAVGM T+IP HN
Sbjct: 62  LRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPHN 121

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A++A++DNP  ++++L + I GPDFPTGG+I   R+ I    R GRG  R+R R
Sbjct: 122 LHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIA-GRDGIDSYLRTGRGIVRMRGR 180

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE   G   I++TEIPY V ++ L+ +IAEL+  K+I  + DIRDES E+ RIV+  
Sbjct: 181 AITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESDENTRIVIEL 240

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R      ++  ++  + +E+ F + +  L   R P+ M +  +L  ++ HRR+V+ RR
Sbjct: 241 K-RGEQSSPILNQLYQKTALESSFGVILLALDK-RRPKQMNIRELLDCYIDHRRDVITRR 298

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + FR++  + R  IL+G  IA  N+D+ + IIR   +  + K  +++++ L+E Q D+IL
Sbjct: 299 TRFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAKYPLSERQTDSIL 358

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKST 490
            LRL  L  LE  +I++E   LL   E++  +L   +  W      +REV  +E+     
Sbjct: 359 ELRLYQLTGLERDKIEAEYLELLKLIEELKVIL---ENDW-----RLREVIKEELLVMKE 410

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
             G  R T  E++ A      + +I  E   + +S+ G+I        RS K     +  
Sbjct: 411 KYGDARKT--EITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPSADYRSQKRGGKGVIG 468

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               + D ++    A T D I+ +++ G     K Y +P G   +    G+++   + LN
Sbjct: 469 TETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTA---KGKSVSSFLRLN 525

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             + I        + S   L++ + +G       S+ +  TR
Sbjct: 526 EGEKIAAMLCLQDFASDRYLVMATRRGVIKKTALSDYLGTTR 567


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/499 (38%), Positives = 298/499 (59%), Gaps = 16/499 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + +L  + +D VDF   ++    EP V P++ P LL NG +GIAVGMAT+
Sbjct: 121 TETRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +AL+  PE+S +KLL  I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLG-SGVRETYLSGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G+G      +V+TE+P+Q+ K+  IEK+AE +   RI  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  DP  ++  +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DRDGMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALVNGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            +R + L RR+S  ++  + R+E+++GL  A   + ++I++I+        +  ++    
Sbjct: 359 EYREQTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQEARDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E + L  E+ ++  LL         +  E++++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSRLQRLLEQRDVLLAALVDELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCE 501
           ++ F+       RRT   E
Sbjct: 479 RKRFATP-----RRTRLIE 492


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 238/752 (31%), Positives = 395/752 (52%), Gaps = 83/752 (11%)

Query: 2   GVDNISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           G+D+ + ++  V  ++ +  + ++  ++  YL YA+S I  RA+PD+RDG KP  RRI+ 
Sbjct: 4   GIDDENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILV 63

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++ L    +  K ++I GE +G  HPHGDQ++Y +LVR+AQ +  R  LI  QGNFG
Sbjct: 64  AMNDLNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFG 123

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++ G   AA+RYTEAR++ VA  +L  +  + VDF  TY++   EP V PS+FPNLL NG
Sbjct: 124 SLAGLPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNG 183

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMATSIP HN+ E+ EA   +ID PE +I+++ + + GPDFPTGG+I   +   
Sbjct: 184 SSGIAVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVIC-GQFGT 242

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y  GR    +RA+    +  + S  IVVTEIPY   + R+ EK+  L+  +R+  + 
Sbjct: 243 RQGYSTGRSTITLRAKTHF-DTEKQSDVIVVTEIPYMETRDRIREKLEALVKDERVKGIA 301

Query: 300 DIRDESAEDV-------RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
            + D +   +       +IVL    R  D ++++  ++  S ++T F + +  L +G  P
Sbjct: 302 RVVDLTDRKIPNWQVHLQIVL---KRDADKEVVLNQLYKYSPLQTTFSIILLAL-VGNRP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-- 410
           Q++ +  +L E++ HR  V+ RR+  ++    +R   ++G+LIA LNIDE+I+ IRN   
Sbjct: 358 QLLSIKDMLLEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPS 417

Query: 411 ---------DKPKPV-MVSR-------------------FSLTENQVDAILNLRLRSLRK 441
                    D   P  M++R                   +SL+ NQ +AI++++L SL  
Sbjct: 418 RSEAKNRLRDIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLAN 477

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  ++  E   LL   E+ID  L+    + +  A    E+ ++  K  D  +RRT   E
Sbjct: 478 LEREKLGDEHRKLL---EEIDECLHLLSDEAHIRAAVREEMDDLQRKYPD--KRRTEISE 532

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDSLKI 553
           +   D    +  +I + P+ V ++ RG+I+   L ++         ++     E D ++ 
Sbjct: 533 IELTD--VNKDELIAEAPMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRH 590

Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-- 606
              A T   +L  +  G     K Y LP  N  +    G A+  L+ L   +++      
Sbjct: 591 VFVASTHSYLLFFTNLGRVYWQKVYDLPLQNRTA---KGRALVNLLSLADGEEVYNCIDV 647

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVTG-DHV 661
             +D    L++ + KG   +V+++ + A +R    G   +K+  ++++  VVKV   D +
Sbjct: 648 REFDDERFLMMATKKG---VVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDL 704

Query: 662 AVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
            +   N   + F+ D    M R     KGV L
Sbjct: 705 IISTANGMSIRFNHDDARAMGRNTRGVKGVSL 736


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 216/702 (30%), Positives = 379/702 (53%), Gaps = 34/702 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGG IV+  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGG-IVQGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  + + ++  +F  +D++  +  NM  +   R P  + L   L+ +L+ R+EV+ +
Sbjct: 302 ELSKEANANGILTYLFKKTDLQISYNFNMVAIHDQR-PVHVGLKAGLEAFLSFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR   N       +++RF  T+ Q +AI
Sbjct: 361 RSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINRFEFTQAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L    +KI+  LN    + + +   IRE  +  +K+  
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFSQL---NDKINC-LNQIIHEESALKDVIREEIKAITKAYS 476

Query: 492 LGRRRTTFCEVSR--ADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKE 547
             RR     EV     D A      I +E + V++S  G+ +  SL+S     +     E
Sbjct: 477 SPRRSVIEAEVENLVIDTAV----TIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +TT+ + + +  G     P   L     +  GE   Q L + + ++ ++ 
Sbjct: 533 DDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIK 592

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
           A   D+  +     +VS+ G  FI + +  +I+    K K+ + +  ++ +  VV V   
Sbjct: 593 AIAVDNLEQGGAFTIVSNDG--FIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYF 650

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
                 +V ++  N   L ++I ++PE+ SR  GV+    +D
Sbjct: 651 QNVKRQNVLLLSHNGVGLRYAIKEVPEIGSRTSGVKAMDLRD 692


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 213/688 (30%), Positives = 376/688 (54%), Gaps = 22/688 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 3   EIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   ++R+ I++GL+ A   +D +  +IR   N+   K  ++     TE Q +A 
Sbjct: 361 RTKFELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAKENLIEVVEFTEEQAEAT 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F     
Sbjct: 421 VMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHDALLNVIKEELNEIKKKFKSE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +     + M   E + + ++  G+I+     S + S +     K+G
Sbjct: 479 ----RLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++  F
Sbjct: 535 DSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF 594

Query: 607 -VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSEEKMKLVVKVTGDHVA 662
              D       V +  N  I + +  +   TR  K  +  KV   + +  V++   D + 
Sbjct: 595 NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLI 654

Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688
            V  N+ + L ++  ++ +   R  GV+
Sbjct: 655 TVITNKGMSLTYNTSELSDTGLRAAGVK 682


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 239/712 (33%), Positives = 366/712 (51%), Gaps = 65/712 (9%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RA+PD RDG KPVHRRI++AM+ +GL    +++K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDE 149
           D +VYD+LVRLAQPF    PLI G GNFG+ID D AAA RYTE R+T++ AE +L  +  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID- 208
           D V+F   ++  + EP V P+K P LL NG +GIAVGMAT++P HN+ E+ +A +AL   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 209 ----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
                 E++  KLL+ I  PDFPTG  I+  +      Y  G GG  +RA   +EEV   
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACII-GKSGSRSLYTTGNGGVVMRAVMHLEEVPTS 239

Query: 265 SW-------CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
           S         I+VTE+PYQV K+ L+E+IA L+  K++  + D+RDES  D +R+V+  K
Sbjct: 240 SGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELK 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            R     ++  ++   + ++T F  N + +   G  PQ   L   L  +L  R + +  +
Sbjct: 300 -RDAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNK 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS----RFSLTENQV 428
            +F++  ++ R  I+ GLLIA  + DE+IAI+RN   +   +  ++S    +  L+  Q 
Sbjct: 359 CAFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           DA+L L+L  L +L   ++  E   L   +  + +LL       N  A     ++E  + 
Sbjct: 419 DAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLT------NDAAVRDTMLEEFMAM 472

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFK 546
               G  R T       DKA +   +++ E   +V++  G+I+   LK+          K
Sbjct: 473 KKRFGTPRKTKILPDEEDKADID--LVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGK 530

Query: 547 EGDSLKIA-----LHAHTT---DRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            G S  I+      H  T    D +L+ +  G AY L A  +  G     G  I  ++ +
Sbjct: 531 RGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPV 590

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-------IAN----TRKGKTFLKVS 645
             + D++T+        L V     N FIV  +E        +A     T++G     ++
Sbjct: 591 KSD-DVITSV-------LPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLA 642

Query: 646 SEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSRGKGVRLQSYKDG 695
             +++    K T +   +VG  R       + D  P     +GV+  + K G
Sbjct: 643 DGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSMTLKKG 694


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 213/612 (34%), Positives = 353/612 (57%), Gaps = 28/612 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G  +   ++KSA+ V
Sbjct: 1   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYTEAR++ +
Sbjct: 61  GNVIGNYHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP HN++E+
Sbjct: 121 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258
            +A +  I  P  S+EKL+E+I GPDFPTG  IVE ++ I+ +++ GRG   VR+    +
Sbjct: 181 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGA-IVEGKQGILNAFKSGRGKVIVRSTSEMI 239

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE  +    IV+TEIPY+V K+ L+ KI E+   + I  + ++RDES    +RIV+  K 
Sbjct: 240 EE--KTMNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLK- 296

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + ++    +  ++  +D++  +  NM  +   R P +M +  IL  ++AH+ +V+ R S 
Sbjct: 297 KDINVQNTLNYLYKNTDLQKNYNYNMVAIKDKR-PVLMGVIEILDGYIAHQIDVVTRSSI 355

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNL 434
             +   + R  I++GL+ A   +DE++  IR ++DK   K  ++ ++  +E Q +AI+ L
Sbjct: 356 HDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYGFSEKQAEAIVML 415

Query: 435 RLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +L  L   +   +++   ELDN +A    ++++LNS +     I  +++ +K+ +     
Sbjct: 416 QLYRLTNTDIVTLENENKELDNRIA---YLNNILNSDEVLRKVIIDQLKGIKKKYPMPR- 471

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHF--KEG 548
           L + R    E+   +K     AMI  E I V I+  G+I+ + + S+  S  + F  KE 
Sbjct: 472 LSKIRDEVQEIKIDEK-----AMILSEDINVSITRDGYIKRISNRSIKASEGIPFGKKEN 526

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV-TA 605
           D L     A+T D +LL +  G    +P   +     +  G+ +  L+ LN  + I+ T 
Sbjct: 527 DYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVKLNAGEKIIGTI 586

Query: 606 FVYDSTCKLLVV 617
            V D    L V+
Sbjct: 587 LVKDFNLPLYVM 598


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 226/681 (33%), Positives = 381/681 (55%), Gaps = 46/681 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +   Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+E+GL+    F+K AR+VGE
Sbjct: 64  LNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAMNELGLNPDTPFRKCARVVGE 123

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA- 140
           V+GK HPHGD +VYD+LVR+AQ F  R  LISG GNFG+ID D  AA RYTE ++++++ 
Sbjct: 124 VLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSIDHDPPAAMRYTECKISKLSK 183

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E++L+ + +   D+ + ++    EP V PS  P +L NG+SGIAVGMAT+IP HN+ EI 
Sbjct: 184 EILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGSSGIAVGMATNIPPHNLTEIL 243

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A   LI+ P++S +KLL+ I  PDFPTGG I+   +   + Y+ G+G   VR +   E 
Sbjct: 244 RAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSIL-GLQGCSKLYKNGQGSIIVRGKTHFET 302

Query: 261 V---GRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
           +    R     I++TE+P+Q+ K+ LI KIAEL+  K +  + D+RDES  + +RIV+  
Sbjct: 303 ILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDGIVDLRDESDRNGIRIVIEL 362

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K +  + ++++ ++F  + ++T F  ++  L +G+ P  + L  +L  ++  R++ + RR
Sbjct: 363 K-KDTNKEVILNNLFKKTPLQTSFGGHILAL-VGQQPATLSLKELLLLFIQFRKKTIRRR 420

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
             F +     +  ++KGL++   +I+ I+ ++R   N  + K +++    LT+NQ DAIL
Sbjct: 421 LQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKIILMES-GLTQNQSDAIL 479

Query: 433 NLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           N++LR L +LE  ++ +E   L+N +   +K  +L         +++  I+  K++F  S
Sbjct: 480 NIQLRRLTRLESNKLNNEYEILNNTIKNLKKPLAL-------PEELSKNIK--KDLFEIS 530

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541
              G  R T    S    +  +  MI+    T+V+  + +I+ +   + +          
Sbjct: 531 ILFGMPRRTNVVHSETSGSIDEMEMIDNHA-TIVMVTKFFIKRMVVETFEPQTRGTRGKK 589

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-----IDL 596
            +  +E D +      +  D IL +S +G A+   A  +   R   + + L      I  
Sbjct: 590 GVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFRAYQIPISRRTAKGVALSAVLPNITT 649

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN---TRKGKTFLKVSSEEKMKLV 653
                I+   V+ S   L++++  G   +++++ +IA    T +G T LKV  E+++  V
Sbjct: 650 GKISSIIPVSVFSSEKYLILLTKNG---MIKKTPLIAFKNITARGLTVLKVGEEDELCWV 706

Query: 654 VKVT-GDHVAVVGENRKLLIF 673
            K +  D + +  +N K L F
Sbjct: 707 RKCSLEDSILISTKNGKALRF 727


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 333/588 (56%), Gaps = 45/588 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 18  MQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV ++Q F +  PL+ G GNFG+I+GD AAA RYTEAR++Q+A E  L
Sbjct: 78  YHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSIEGDGAAAMRYTEARLSQIAQEAYL 137

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP HN+ E+ +  +
Sbjct: 138 ADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGADGIAVGMATSIPQHNLGEVIDGVI 197

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + NPEI+  +++EYI GPDFPTGG IV +R+ ++  Y  G G  ++R +  +E++  G
Sbjct: 198 AYMKNPEINTRQMMEYIPGPDFPTGG-IVTNRDELLAIYSTGAGKIKIRGKASIEKIKGG 256

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSL 320
              IVV+EIPY +      + +     L+ +K+   + DI + S++D +RIV+  K R  
Sbjct: 257 REAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDIVDISNMSSKDGIRIVIELK-RGA 315

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   ++  ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + E+  R+ +  +
Sbjct: 316 DAQNVLNLLYRKTRLEDTFGVNMLAVAEGK-PETMGIVPIIRHHVNFQYELATRKYTNLL 374

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------RFS--------- 422
           +    + EI +GL+ A   ID II I+R     K              RF          
Sbjct: 375 KKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARACLVDGITEGIRFKSEQSEKDAR 434

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               T+ Q DAIL +R+  L  LE  Q++++ +  +   ++   +L         I  ++
Sbjct: 435 LLHFTQRQADAILQMRMYRLIGLEIEQLRADYEKTMQNIQEDMDILEHRASMARVIIRDL 494

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +E+K+ F++     +RRT    V+   +A +++  IE++ + V++   G+++     ++D
Sbjct: 495 KEIKKTFAR-----KRRTLIDNVA---EAVIEEKPIEEQEMVVLMDRFGYVK-----AID 541

Query: 540 LSALHFKE---GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           LS     +       K  +H    DR+ + S+ G+ + +   ++  G+
Sbjct: 542 LSVYDRNQEAADKENKYVIHCSNLDRLAVFSSTGQLHLIKVLDMPGGK 589


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 164/299 (54%), Positives = 218/299 (72%), Gaps = 3/299 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 231/321 (71%), Gaps = 2/321 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSMGRVPQV 354
            ++T F +N+  L  G+ P+V
Sbjct: 300 ALQTSFGINLLALVDGQ-PKV 319


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 232/696 (33%), Positives = 381/696 (54%), Gaps = 43/696 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  + + Y+ YALS I  RA+PD+RDG KPVHRRI+ AM E+ L   A ++K AR+VGE
Sbjct: 70  LQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCARVVGE 129

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA- 140
           V+GK HPHGD +VYDSLVR++Q F  R  LI G GNFG+ID D  AA RYTE +++ ++ 
Sbjct: 130 VLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMRYTECKLSNLSV 189

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L+ +D   V++   ++    EP + PS  P++L NG+SGIAVGMATSIP HN+ EI 
Sbjct: 190 DTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHNLGEIV 249

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG------RGGFRVRA 254
            + LALIDN  I+ ++L++Y+  PDFPTGG+I+    S  + Y  G      RG   V  
Sbjct: 250 RSCLALIDNYNITNQELIKYLPCPDFPTGGLII-GNNSCKDLYEKGISSIILRGKINVEF 308

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
              V++V +  + +++TEIP+Q+ KS LI K+A+L+ +K I  + DIRDES  + +RIV+
Sbjct: 309 SKSVKKVSK--YNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKGIRIVI 366

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  DP  +++ I   S ++  F   M +  + + P ++ L  IL  +L  RR+++ 
Sbjct: 367 EIK-RDYDPIKIVKIILKKSSLQITFSSYM-LCIVDKQPILVNLKEILSLFLHFRRKIIR 424

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           +   F ++ I ++  ILKG+ I+   ID  I  I+   N  + K +++  F L++ Q +A
Sbjct: 425 KNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILM-EFGLSQEQSEA 483

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILNL+LR L KLE  +I ++ +   +   ++  +L+S       I  +I+ + EI+    
Sbjct: 484 ILNLQLRRLTKLESKKIDNDFEITKSSLNELKCILSSNILIDGIIKNQIKNISEIY---- 539

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN----RGWIRSLKSHSVDLS---AL 543
             G  R T    S  +    +   IE     ++I+     + ++ S +S +        L
Sbjct: 540 --GFPRKTLLINSINENIIEELETIENYESVIMITQYYIKKMFLESFESQTRGTKGKRGL 597

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHNQ 600
              +GD +      +  D ++ +S+ G AY +    +   + + +    + +L  L +NQ
Sbjct: 598 IISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILSILKGLENNQ 657

Query: 601 DIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +++ +  S C+    L++++ KG       S     + +G   L +   + +K V K 
Sbjct: 658 --ISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDENDSLKWVRKC 715

Query: 657 TGDHVAVVGENR-KLLIFSIDQIPEMSRG---KGVR 688
             D   ++   + KLL F+  Q    S G   KG++
Sbjct: 716 YNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIK 751


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 225/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVVTEIPYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+F NLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNM 343
           ++T F +N+
Sbjct: 300 LQTSFGINL 308


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 204/628 (32%), Positives = 352/628 (56%), Gaps = 22/628 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +   SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G  +   ++K
Sbjct: 3   EKIITQSLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYTEA
Sbjct: 63  SAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D++ V     +++ + EP V P+K+PNLL NG +GI+ G AT IP H
Sbjct: 123 RLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +  + +P  S++KL+E++ GPDFPTG  IVE ++ I  ++  GRG   VR+
Sbjct: 183 NLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGA-IVEGKQGIRTAFEKGRGKVVVRS 241

Query: 255 RW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   + E  +    I+V+EIPY+V K+ L+ K+ E+   K +  + ++RDES  +   ++
Sbjct: 242 KTEIIHE--KNMNKIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSIV 299

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D    +   F  +D++  +  NM  +   R P  M ++ IL  ++ H+ EV+ 
Sbjct: 300 IDLKKDVDVQNTLNYFFKNTDLQKNYNYNMVAIKDKR-PVCMGIEAILDGYIQHQIEVIT 358

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDA 430
           +RS F +   + R  I+ GL+ A   +D+++  IR+    +   +   ++F  TE Q +A
Sbjct: 359 KRSIFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAKINIQTQFGFTEKQSEA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E + L +  + ++ +LNS +     I  E++ +K+ +    
Sbjct: 419 IVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDILNSDQVLRKVIVDELKNIKKQYPSP- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548
                R T  +    +    ++AMI  E I V I+  G+I+  S +S+    + L  K+ 
Sbjct: 478 -----RLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKRISQRSYKASENTLFGKKD 532

Query: 549 DSLKIALH-AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
           D + + LH A+T D++L+ +  G    +P   L     +  G+ I  LI ++  + IV +
Sbjct: 533 DDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFKWKELGKHISYLIKVSPEEKIVGS 592

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESE 630
            +   +D    +++ S  G    VE  E
Sbjct: 593 VLVKSFDYPLYIILASRFGQMKRVELKE 620


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 202/566 (35%), Positives = 328/566 (57%), Gaps = 25/566 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI+++M E G     A  KSAR+VG+V+G+
Sbjct: 32  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDRAHVKSARVVGDVMGR 91

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM+  A L++ 
Sbjct: 92  YHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSHEAMLLVG 150

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN+ E+  AA  
Sbjct: 151 ELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLAEVVSAARW 210

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGR 263
           LI++P+  ++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+R R  +   E  R
Sbjct: 211 LINHPDADLDKLMEFVPGPDLPTGGVLL-GLDEVRRAYETGRGVVRMRGRVEIGPLEGSR 269

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSL 320
           G   I V E+PY V   ++I  +  E+   KR+  + D++D  +     R+V+  K   +
Sbjct: 270 GRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRENGTRLVIECKV-GV 328

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +L HR +V+ RRS++R 
Sbjct: 329 NPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PQTLGLKALLEVFLRHRYDVVTRRSAYRR 387

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLR 437
           +    R+ ++ GLLIA L+ID+++ +IR+ D  +     ++ +F L++ Q   IL+  LR
Sbjct: 388 RKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQFKLSDIQASYILDTPLR 447

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K +  ++++E + L  E  ++ ++L+  K     ++ E+  V + F        RRT
Sbjct: 448 RLTKFDRIELEAEQEQLRKEIAQLSTILDDEKVLRKVVSDELAAVVKKFGTE-----RRT 502

Query: 498 TFCEVS----RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG----D 549
           T  +       A  A      +  +P  V++S  G +    + S + +    + G    D
Sbjct: 503 TLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEEAAEGRRRSGRVKHD 562

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTL 575
           +++  +H+    R+LL+++ G+A+ +
Sbjct: 563 AVRALVHSTARGRVLLVTSAGRAFKI 588


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/309 (49%), Positives = 225/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY++
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+IS+ +L
Sbjct: 122 YDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTEIPYQV
Sbjct: 182 MEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  LVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 224/306 (73%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E 
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++TEIPYQV K+
Sbjct: 181 IPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/312 (50%), Positives = 225/312 (72%), Gaps = 1/312 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVLSMG 349
            F +NM  L  G
Sbjct: 301 SFGINMLALVDG 312


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  329 bits (844), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/306 (50%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++D DSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ DNPEI+ ++L+EY
Sbjct: 122 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELMEY 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
             GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 182 SPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 300

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 301 INLLAL 306


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 154/309 (49%), Positives = 225/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +NM  L
Sbjct: 301 SFGINMLAL 309


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 222/309 (71%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F + +  L
Sbjct: 301 SFGIKLLAL 309


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/302 (51%), Positives = 220/302 (72%), Gaps = 1/302 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 ET 337
           +T
Sbjct: 300 QT 301


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 225/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +NM  L
Sbjct: 301 YFGINMLAL 309


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 240 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 299

Query: 331 MLSDMETRF 339
             + ++T F
Sbjct: 300 KQTALQTSF 308


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/302 (50%), Positives = 220/302 (72%), Gaps = 1/302 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+R
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGI 299

Query: 342 NM 343
           N+
Sbjct: 300 NL 301


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 222/309 (71%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLI KIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/320 (49%), Positives = 230/320 (71%), Gaps = 2/320 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQV 354
           ++T F +N+  L  G+ P+V
Sbjct: 300 LQTSFGINLLALVDGQ-PKV 318


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/302 (50%), Positives = 219/302 (72%), Gaps = 1/302 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RF 339
            F
Sbjct: 301 SF 302


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/461 (40%), Positives = 288/461 (62%), Gaps = 13/461 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     F+K AR+
Sbjct: 8   SISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPFRKCARV 67

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RYTE R+  
Sbjct: 68  VGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRLAP 127

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++    L+ +D + V+F + ++    EP V P++ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 128 ISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNIPPHNLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           EI +  +ALI+N E+S +KL   I GPDFPTGG ++ SR +I E Y  G+G   +R    
Sbjct: 188 EIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSR-AIEELYATGKGSITIRGVIN 246

Query: 258 VEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311
            E +  G+G      +++TE+P+Q+ K+  IEK+AEL+ + +I  + DIRDES  D +RI
Sbjct: 247 SEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDRDGMRI 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K  S + +L++ +++  + ++T F      L  G+ P  + L   L  +L  R E 
Sbjct: 307 VIELKKDS-NAELVISNLYKKTTLQTNFGAIFLALIKGK-PVQLNLKQYLNYFLEFREET 364

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + +R+++ ++    ++EIL+GL  A  NI +II II    N  + K  ++  F L+  Q 
Sbjct: 365 IRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLIDIFYLSAKQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +++L++ L+ L  LE+ QI  ++  L  +K+   +LLN  K
Sbjct: 425 NSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERK 465


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/309 (49%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLN 342
            ++T F +N
Sbjct: 300 ALQTSFGIN 308


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 266/402 (66%), Gaps = 2/402 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGII +  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGII-QGLDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  ++ H+ EV+
Sbjct: 300 AIELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISDGR-PKLMGIKQIIDSYINHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN    K
Sbjct: 359 ANRTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKK 400


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/306 (50%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             Q F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 222/309 (71%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT   I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTARQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 209/685 (30%), Positives = 378/685 (55%), Gaps = 34/685 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ EN+  V     + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     
Sbjct: 16  IIRENLDTV-----VADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKP 70

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RY
Sbjct: 71  FKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRY 130

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +
Sbjct: 131 TEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEM 190

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+A + NP I + KL + I GPDFPTGGII  + + I E++  G+G   
Sbjct: 191 PPHNLNEILDAAIAKVKNPAIELSKLAKIIQGPDFPTGGIIYGT-DGIHEAFERGKGRIT 249

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           + +R+ V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   
Sbjct: 250 LASRYSVYADNKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGIN 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L   ++  D ++++  +F+ + M   +  N NV+     P+ + +  +L  +L H +++
Sbjct: 309 ILITLDKEADENVIVNYLFLKTQMRVYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDI 367

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQ 427
             +   F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ
Sbjct: 368 KIKTIEFDLIKHRERLEIVIGFLKVAKISDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L K +E     E + L  + ++ + LLN   +    +    +++K  F 
Sbjct: 428 ATAIAELRLYKLSKTDEQSFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKVKF- 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALH 544
                GR R T  E  +   +  Q+ ++++E + + IS  G+I+  S K +  +L +   
Sbjct: 487 -----GRPRRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYG 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D++    +A + D++LL +  G    LP   +     +  G  +   +DL   +++
Sbjct: 542 IKEDDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLASGEEL 601

Query: 603 VTAFV---YDSTCKLLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
           V+A     +DS+  + + + KG     +++E ++   +R  KTF+ +  +   +L+  K+
Sbjct: 602 VSAIKVSDFDSSNYVCLFTKKGQGKKVLLKEFDV---SRFSKTFVAMKLKNDDELIGAKI 658

Query: 657 TG--DHVAVVGENRKLLIFSIDQIP 679
           +     V ++ +N    ++S +++P
Sbjct: 659 SNGLKDVLLITKNNFASLYSENEVP 683


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/302 (50%), Positives = 219/302 (72%), Gaps = 1/302 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 ET 337
           +T
Sbjct: 300 QT 301


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +NM  L
Sbjct: 301 SFGINMLAL 309


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/306 (50%), Positives = 222/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E 
Sbjct: 123 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEL 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 242 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 301

Query: 341 LNMNVL 346
           +NM  L
Sbjct: 302 INMLAL 307


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 221/715 (30%), Positives = 385/715 (53%), Gaps = 52/715 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 75  YHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARLAKITQEAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D +DF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ EI +A  
Sbjct: 135 ADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATSIPTHNLGEIVDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +I+ ++L++YI GPDFPTGGI+V +++ + E Y  G G  ++R +  VEE+  G
Sbjct: 195 AYMKNNDITTKQLMKYIKGPDFPTGGIVV-NKDDLAEIYETGTGKIKIRGKVDVEEIKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              IV++EIPY +  +   + +  +  L+  K+   + DI ++S+ E +RIV+  K R  
Sbjct: 254 RKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSKEGIRIVIEVK-RDA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D D L+  ++  + +E  F +NM  ++ GR P+V+ L  I++  +  + E+  R+    +
Sbjct: 313 DVDNLINMLYKKTRLEDTFGVNMLAVADGR-PEVLGLKRIIEHHVDFQFELATRKYKTLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPKPVMVS 419
           +    + EI +GL+ A   ID II I+R                      + K    M S
Sbjct: 372 KKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATEKIKFKSKRSEKMAS 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               T+ Q  AIL +RL  L  LE   +  E +  LA   K + +LN+       I  ++
Sbjct: 432 MLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKYEDILNNYDSMAQVIIDDL 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +K+ ++      +R+T   ++  A++A  ++  ++++ + +++   G+ +++     +
Sbjct: 492 DALKKEYAV-----KRKT---KIENAEEAVFEENKVQEQEVVLLMDRFGYAKTVDGSVYE 543

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
            +     + +  K  L    T ++ L ++DGK + +   +L  G  R  G  I  + + +
Sbjct: 544 RNREAADKEN--KYILRCMNTGKLCLFTSDGKMHQIKVMDLPYGKFRDKGFPIDNVSNFD 601

Query: 598 HNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++ +     D      K L V+ +G    V  SE    T++     K+  E+ +  + 
Sbjct: 602 STKEEIVYLCDDRELFFSKFLFVTKQGMIKKVAGSEFQV-TKRTIAATKLQDEDALVSIR 660

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFK 704
            +     V ++ EN  +L F  +++ E  +G    +G++LQ  K+  + +V  F+
Sbjct: 661 PIRDVQDVVLMTENGFVLRFPAEEVSEKKKGAVGVRGMKLQ--KNDSVEEVYLFE 713


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/309 (50%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 226/315 (71%), Gaps = 1/315 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVLSMGR 350
           +T F +N+  L  G+
Sbjct: 300 QTSFGINLLALVDGQ 314


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 208/692 (30%), Positives = 362/692 (52%), Gaps = 26/692 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+PE  +  L+ YI GPDFPTGGII +  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPEAPLSALMRYIKGPDFPTGGII-QGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTEISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             N+  + + ++  +F  +D++  +  NM  +   R P  + L   L+ +L  R+EV+ +
Sbjct: 302 ELNKGTNAEGILTYLFKKTDLQISYNFNMVAIHNQR-PVTVNLKQGLQAFLDFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS+F +     R  I++GL+     +DE++A IR   N       ++ +F  T+ Q +AI
Sbjct: 361 RSAFELAKAQARQHIVEGLIRMLSILDEVVATIRASQNRKDATQNLIDKFQFTQPQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L A+   ++ +L       + I  E+  + + ++    
Sbjct: 421 VTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTEESALKDVIRDELTAITKTYTTP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549
             RR     EV   D        I +E + V++S  G+ +  SL+S+    +     + D
Sbjct: 479 --RRSQIEAEVE--DLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSYKASDADNGLADDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
                   +TT  + + +  G     P   L     +  GE   Q L +   ++ ++   
Sbjct: 535 LPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWKDTGEHFSQQLANWRPDEYVIQVV 594

Query: 607 VYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK------VT 657
             D+  +     +V++ G       ++++    K KT + +  +     VV       VT
Sbjct: 595 AVDNLTQGGAFTIVTNDGFIKQTTLADMVPKAYKKKTSMAIKLKTDDSQVVNVAYTPTVT 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
              V ++  N   L F +  +PE+ +R  GV+
Sbjct: 655 DQDVLLLSHNGVGLRFGLSDVPEIGARTAGVK 686


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG +PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      V+    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/308 (49%), Positives = 223/308 (72%), Gaps = 1/308 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLN 342
           ++T F +N
Sbjct: 300 LQTSFGIN 307


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 154/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ DNP+I+I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 237/749 (31%), Positives = 389/749 (51%), Gaps = 56/749 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G  F   ++K+ARIVG+ +GK
Sbjct: 13  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRKAARIVGDTMGK 72

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ +   E+ L
Sbjct: 73  YHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEARLQKFTQEVYL 132

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D++ V+F   ++E + EP V P + PN+L NG+ GIAVGMATSIP HN+ E+ +AA 
Sbjct: 133 KDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPPHNLGEVIDAAK 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A I N +++  +L++YI GPDFPTGGI+V +++ + + Y  G G  R+R +  VE+   G
Sbjct: 193 AYIGNKDLTDRQLMKYIKGPDFPTGGIVV-NKDDLPQIYESGSGKIRIRGKVEVEKGKNG 251

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +A L+  ++ P + DI +  S E +RIVL  K +  
Sbjct: 252 RQSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGIRIVLELK-KGA 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  +L  +   + E+  R+    +
Sbjct: 311 DVERLKNLLYKKTRLEDTFGVNMLAVAGGR-PETLSLKKVLDNFTDFQFELATRKYQQML 369

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
           Q    + E+ +GL+ A   ID II I+R     K V                        
Sbjct: 370 QKELEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTMGVTDGINFKHKSSEKQAK 429

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               T+ Q  AIL +RL  L  LE   +  E +  +A+  + +++LN        I  ++
Sbjct: 430 ELCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYENILNDYDTMAGVIVDDL 489

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++K+ ++       R+T    +  A+   L +   E+  +  ++   G++R++ +   D
Sbjct: 490 EQIKKNYATP-----RKTV---IENAEAIVLAEPEEEETELVFLMDRFGYVRTVDTSVYD 541

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
            +    KE      K   H  +TDR+ + + +G  +T+   ++     R  G  I  L +
Sbjct: 542 RN----KEAADAENKYIFHCMSTDRVCVYTDNGMMHTIKVKDIPFTKFRDKGTPIDNLCN 597

Query: 596 LN-HNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +  N+ +V A         KL+ V++ GN  IV  SE   N RK  +  K++ +    +
Sbjct: 598 YSADNERVVFAGPMAEVKQKKLVFVTASGNVKIVSGSEFDVN-RKVISATKLADDADSVV 656

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +V     GD + +   +   L F + +IPE  +   GVR  S   G   +     +  G 
Sbjct: 657 LVGYADAGDFLVIQSRDGYFLRFPMTEIPEKKKTAVGVRGISL--GKDDEAEAAYLVAGG 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             ++   R    S N L   LGKR G G+
Sbjct: 715 NEMEIEYRGKKVSLNKL--RLGKRDGKGT 741


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 153/308 (49%), Positives = 223/308 (72%), Gaps = 1/308 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLNM 343
           +T F +N+
Sbjct: 300 QTSFGINL 307


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 155/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+  
Sbjct: 123 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMGI 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 242 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 301

Query: 341 LNMNVLSMGR 350
           +N+  L  G+
Sbjct: 302 INLLALVDGQ 311


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 205/599 (34%), Positives = 322/599 (53%), Gaps = 54/599 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K V +   L   +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L  G   +K +
Sbjct: 6   IKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTRKCS 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+ +G  HPHGD ++Y +LV +AQ +  R  L+ GQGNFG  DGD  AA RYTEA++
Sbjct: 66  KIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYTEAKL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   ++  +D+D VDF  TY+ E +EP VFPS FPNLL NG +GIAVGMAT++P HN+
Sbjct: 126 SGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +   A+IDNP +++E+L +YI GPDFPTGG ++     I   +R GRG  R+R + 
Sbjct: 186 GEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVL-GFSGIDNYFRTGRGSVRIRGKI 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   +++ E+PY V ++ L E+IAEL   K +  +  IRD S E   I +  K
Sbjct: 245 DMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTCIEIELK 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P ++M  ++ L+ MET F +NM  +   R P+ + +   +  ++ HRREV+ RR+
Sbjct: 305 -RDARPQVVMNQLYKLTSMETSFAVNMLAIHDNR-PKTLAMMDAINFYIEHRREVVVRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK------------------- 414
            + +   ++  E L+  L+A  ++D+ I+IIR   N D+ +                   
Sbjct: 363 RYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLGIL 422

Query: 415 -----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSG 468
                 +   R+  TE QV++IL+LRL  L  LE  +I  E   LL   K+ +D L N  
Sbjct: 423 IRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDILANES 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           +     +  E++ +K+ ++        R T       D A   + +I  + + V I++ G
Sbjct: 483 R-VLGIVKDELKAIKDKYATP------RVTRIIPFSGDMAI--EDLIPNDTMIVTITHSG 533

Query: 529 WIRSLKSHSVDLSALHFK--------------EGDSLKIALHAHTTDRILLLSTDGKAY 573
           +I+   S    + A   K              E D ++    A   D ++  +  G+ Y
Sbjct: 534 YIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVY 592


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 229/686 (33%), Positives = 364/686 (53%), Gaps = 71/686 (10%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S T   + +  V++   +   Y+ YA+S I  RA+PD RDG KP  RRI+ AM+++ L
Sbjct: 3   SASFTPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
              +   K A+I G+  G  HPHGD S+Y +LVRLAQ +  R  LI  QGNFG++ G   
Sbjct: 63  GPNSGRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR++ VA  +L  +  D VD+  TY++ + EPVV PS+FPNLL NG+SGIAVG
Sbjct: 123 AAMRYTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN+ E+ +A + L+++PE SI++L+E + GPDFPTGGII   R  I + Y  G
Sbjct: 183 MATSIPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIIC-GRYGIRQGYLTG 241

Query: 247 RGGFRVRA--RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
           R    +RA  R+  E   + +  I VTEIPY   + R+ EK+ +L+     K I  + D+
Sbjct: 242 RSTLTLRAKTRFLTE---KNTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDL 298

Query: 302 RDESAEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +    ++ L     R  D ++++  +F  S +++ F + +  LS G  P+ M +  +
Sbjct: 299 TDRTTPAWQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLALS-GNRPKTMNIKEL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPK- 414
           + E++ HR  V+ R++ F++    +R   ++GLLIA LNIDE+I  IR+     E K + 
Sbjct: 358 IGEFIRHRITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERL 417

Query: 415 ------PVMVSR-------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                   MV+R                   +SL+ NQ +AI++++L SL  LE+ +++ 
Sbjct: 418 QAILVPSAMVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRG 477

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   L+   E I   L+    + +  A    E++++  K  +  R   +  E+S  DK  
Sbjct: 478 EHQRLI---EDIFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDK-- 532

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTD 561
             + +I +E + V +S RG+I+ L  H+          +      + D+++    + T D
Sbjct: 533 --EDLIPEEMMVVTLSQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHD 590

Query: 562 RILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCK 613
            +L  +  G     K Y LP   L S    G A+  L+ L   + + T      ++    
Sbjct: 591 WLLFFTDKGRVFWQKVYDLP---LQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEENRY 647

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGK 639
           L++ +  G   IV+++ + A  R  K
Sbjct: 648 LVMATRAG---IVKKTSLDAYKRPTK 670


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/326 (49%), Positives = 229/326 (70%), Gaps = 3/326 (0%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  + VR+V+  K 
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELK- 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNM 343
           R    +++M  ++  + M+T F  NM
Sbjct: 323 RDATAEVVMNQLYRFTPMQTYFGCNM 348


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 155/277 (55%), Positives = 210/277 (75%), Gaps = 2/277 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L
Sbjct: 122 YDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 277


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 153/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLN 342
           +T F +N
Sbjct: 300 QTSFGIN 306


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 328/602 (54%), Gaps = 20/602 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M  +GL    AFK
Sbjct: 5   EEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAFK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID D AAA RYTE
Sbjct: 65  KSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT GIA G AT IP 
Sbjct: 125 TRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E++  G+G   + 
Sbjct: 185 HNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEAFETGQGKVVLV 243

Query: 254 ARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +++ +  +    +  I + EIP+ V KS L+++I E+   K+I  + D+ D+S      +
Sbjct: 244 SKYKI--INEPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L    +  + +L++  +   + M+  +  N +V      P+++ +  +L  +L H +E+ 
Sbjct: 302 LIELEKEANIELILNYLLQKTQMQISYSYN-SVAIHNYTPKLLSIYKMLDYYLDHLKEIK 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQV 428
            +   F ++  ++R+EI+KG L      DE+I IIRN D  K      +V  F  T  Q 
Sbjct: 361 TKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI  +RL  L ++++    +E + L+ +  K+ +LL +   ++NQ    I  +KEI   
Sbjct: 421 TAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLEND-LEFNQYLVSI--LKEI--- 474

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHF 545
            T  GR R T            Q+ +I+ E    VI+ +G  + + +    S D+S +  
Sbjct: 475 KTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESNDISNISL 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIV 603
           KE D         T +++L+ ++ G    +P   +           L ID  L  ++ I+
Sbjct: 535 KEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETII 594

Query: 604 TA 605
           +A
Sbjct: 595 SA 596


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/694 (30%), Positives = 367/694 (52%), Gaps = 30/694 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A   L+D+PE  +  L+ Y+ GPDFPTGGII +  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGGII-QGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I VTE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTAISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  +F  +D++  +  NM  +   R P  + L   L+ +L  R+EV+ +
Sbjct: 302 ELTKDANAEGILTYLFKKTDLQIAYNFNMVAIHDQR-PVHVGLKQGLQAFLGFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +D+++A IR   N       ++++F  T+ Q +AI
Sbjct: 361 RSAYELAKAQARQHIVEGLIRMLSILDQVVATIRASKNRRDATQNLITQFQFTQPQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L A+ +++  ++N      + I  EI  +      +T 
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINEASALNDVIRDEITAI------TTS 474

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549
              +R +  E    D        I +E + V++S  G+ +  S++S+    S     + D
Sbjct: 475 YRSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRSSIRSYKASDSDNGLADDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI-QLLIDLNHNQDIVTAF 606
            +      +TT  + + +  G     P   L     +  GE   Q L + + ++ ++ A 
Sbjct: 535 MVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIQAA 594

Query: 607 VYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVT---- 657
           V D+  +     +VS+ G  FI + +  +++    K KT + +  +     VV V+    
Sbjct: 595 VVDTLDQGGAFTIVSNDG--FIKQTTLNDMLPKAYKKKTAMAIKLKTDASYVVNVSYFKA 652

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
                V ++  +   L F +  +PE+  R  GV+
Sbjct: 653 TATPEVLLLSHHGIGLRFKLTDVPEIGPRTAGVK 686


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/310 (49%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 123 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 242 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 301

Query: 341 LNMNVLSMGR 350
           +N+  L  G+
Sbjct: 302 INLLALVDGQ 311


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 328/602 (54%), Gaps = 20/602 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M  +GL    AFK
Sbjct: 12  EEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID D AAA RYTE
Sbjct: 72  KSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT GIA G AT IP 
Sbjct: 132 TRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E++  G+G   + 
Sbjct: 192 HNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEAFETGQGKVVLV 250

Query: 254 ARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +++ +  +    +  I + EIP+ V KS L+++I E+   K+I  + D+ D+S      +
Sbjct: 251 SKYKI--INEPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISI 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L    +  + +L++  +   + M+  +  N +V      P+++ +  +L  +L H +E+ 
Sbjct: 309 LIELEKEANIELILNYLLQKTQMQISYSYN-SVAIHNYTPKLLSIYKMLDYYLNHLKEIK 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQV 428
            +   F ++  ++R+EI+KG L      DE+I IIRN D  K      +V  F  T  Q 
Sbjct: 368 TKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQA 427

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI  +RL  L ++++    +E + L+ +  K+ +LL +   ++NQ    I  +KEI   
Sbjct: 428 TAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLEND-LEFNQYLVSI--LKEI--- 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHF 545
            T  GR R T            Q+ +I+ E    VI+ +G  + + +    S D+S +  
Sbjct: 482 KTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESNDISNISL 541

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIV 603
           KE D         T +++L+ ++ G    +P   +           L ID  L  ++ I+
Sbjct: 542 KEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETII 601

Query: 604 TA 605
           +A
Sbjct: 602 SA 603


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 230/718 (32%), Positives = 383/718 (53%), Gaps = 61/718 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 74  YHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSIP HN+ E+ +A  
Sbjct: 134 ADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSIPPHNLGEVVDAVK 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GR 263
           A +    I+ E+L+EYI GPDFPTGG+++ +++ ++  Y  G G  ++R +   E    R
Sbjct: 194 AYMRKESITNEELMEYIKGPDFPTGGLVI-NKKDLLNIYSSGTGKLKLRGKVTFEPAKKR 252

Query: 264 GSW-CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           G    +V++EIPY +     S+ +     LI  K    + DI +ES++D +RIVL  + +
Sbjct: 253 GEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESSKDGIRIVLELR-K 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + L   ++  + +E  F +NM  +  GR P+ + L GI++       EV  R+   
Sbjct: 312 GADVERLKNLLYKKTKLEDTFGVNMLAIVDGR-PETLDLKGIIENHTQFYYEVTRRKYKT 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            +  +  + EI +GL+ A   ID II IIR     K V                      
Sbjct: 371 LLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVKACLTKGDVGNINFKSSDSMIE 430

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            ++ S T+ Q  AIL+L+L  L  LE   +K E + +LA+ E+ + +LN+ K   N I  
Sbjct: 431 ATKLSFTDKQASAILDLKLYRLIGLEILMLKEEYEEILAKIEEYEDILNNEKSLKNVIRK 490

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ ++K+ F      GR R T  E  +  +A    A +++E +  V+   G+ +++   +
Sbjct: 491 ELDKIKKEF------GRERRTVVEDGK--EAVYVAAPVKEETVYFVMDRFGYSKTMDKAT 542

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591
              +  +  KE    K  +    TD+I + +  G     K   +PAG     R  G  I 
Sbjct: 543 YQRNKENILKE---YKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKF---RDKGVPID 596

Query: 592 LLIDLNHNQDIVTAFVYDSTCKL---LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L + +  ++ +   V D+   +   L+ ++  +   V + E++   ++     K+S +E
Sbjct: 597 NLCNYDSTKEYIIQ-VLDAESMIHSSLLFATAKSMLKVMDGELLNAAKRTVQATKLSEDE 655

Query: 649 KMKLV----VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDV 700
            ++++    ++ + D V +  +    L F + +IP+  +   GVR ++  KD  ++++
Sbjct: 656 LIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKDDSLTNI 713


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/306 (49%), Positives = 222/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 182 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSFG 300

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 301 INLLAL 306


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVLSMG 349
           +N+  L  G
Sbjct: 300 INLLALVDG 308


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/306 (49%), Positives = 222/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/268 (56%), Positives = 204/268 (76%), Gaps = 1/268 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAED 308
           RLIEKIA+L+  K+I  + D+RDESA +
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESARN 267


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/309 (49%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P+I+I++L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 182 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 301 SFGINLLAL 309


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/302 (50%), Positives = 218/302 (72%), Gaps = 1/302 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYES 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+ D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I +L
Sbjct: 122 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV
Sbjct: 182 MEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+R+ES  +   ++    R  +  +++  ++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQT 300

Query: 338 RF 339
            F
Sbjct: 301 SF 302


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 222/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E 
Sbjct: 123 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEV 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 242 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 301

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 302 INLLAL 307


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/572 (32%), Positives = 327/572 (57%), Gaps = 14/572 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N++ ++    L +R+  Y+   I++RA+PD+RDG KPV RRI++AM E        ++K
Sbjct: 6   QNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADNPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYTEA
Sbjct: 66  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +  D VD+   +++   EP+V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ ++ +   ++  ++++I GPDFPTG I+ +  + +   Y+ G G   +R+
Sbjct: 186 NLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTIL-QGAKGLKAIYKSGHGKIVLRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E +  G   IV+TE+PY+V KS+LI++I ++ I +++  + D+RDES  +   ++ 
Sbjct: 245 TSTIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTRLVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D + ++  +F  +D++  +  NM  ++  R P  + L  +L+ ++AH++EV+ R
Sbjct: 305 EIKREADAEQILNYLFKNTDLQINYHFNMIAINQRR-PHEVGLIDMLEAYIAHQKEVILR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +     R+ I+ GL+     +D++IA IR  +     K  +   F  + +Q +AI
Sbjct: 364 RTQYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKEFDFSLDQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E   L        ++L+  K     +  E++ VK+ F     
Sbjct: 424 VSLQLYRLTNTDIVALQNERLELNERIGMYHNILSKDKSLKATLINELKAVKKAFPSP-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEG 548
               R T  EV   +    Q  ++ +E + V ++  G+I+  SL+S +  D   L  +E 
Sbjct: 482 ----RRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGYIKRTSLRSFATSDTMDLGVREL 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           D +  A    T   ++L++  G+   LP   L
Sbjct: 538 DYVIFAQELSTYQALVLITNKGQYIHLPVHEL 569


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 219/699 (31%), Positives = 392/699 (56%), Gaps = 37/699 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E ++ +S    + +R+  Y+   I++RA+PD+RDG KPV RRI++AM          
Sbjct: 1   MSQEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  YRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ + ++ VDF   +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 121 TEARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A + L+ +    +E+LL+ + GPDFPTG II +  ++I ++Y+ G+G   
Sbjct: 181 PPHNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGAII-QGIDAIQQAYKTGQGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           + ++  +E +  G   IVVTE+PY+V KS+LI+++ E+ I +++  + D+RDES  + VR
Sbjct: 240 LVSQTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K R +D   ++  +   +D++  +  NM  ++  R P+++ L  +L+ +++H++E
Sbjct: 300 LVVELK-RDVDAKGILTYLLKHTDLQVNYHFNMVAINKRR-PELVNLQTMLEAYISHQQE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           VL RR+ + +    +R+ I+ GL+     +DE+IA IR   N+ + K  +V+ F  +  Q
Sbjct: 358 VLTRRTQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLVAEFDFSMEQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN--SGKQQWNQIAC-EIREVKE 484
            +AI++L+L  L   +   ++ E    L   E+I    N  S  +  N++   E++ +K+
Sbjct: 418 SEAIVSLQLYRLTNTDITALQQE---RLELNERILMYQNILSNPEILNKVLINELKAIKK 474

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLS 541
            F+      RR     EV   +  T    +I  E + V ++  G+++  S++S  S DL+
Sbjct: 475 DFATP----RRSQIQAEVQSLEIDT--HILIPDEQVMVSLTKEGYMKRTSMRSFASSDLN 528

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
           +L  ++ D         T   ++++++ G    +P   L  +  +  G  +     L   
Sbjct: 529 SLGLRDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEVKWKDLGVHLSQNYQLQDG 588

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-------NTRKGKTF-LKVSSEEKMK 651
           +  V AFV       +++++K  A +++++ + A        TR  K   L    +E + 
Sbjct: 589 ERFVNAFVASQEEHKVILATK--AGMIKQTPLSAFTTYRSYKTRTAKAMNLLDDQDEVVA 646

Query: 652 LVVKVTGDHVAVVGENRK--LLIFSIDQIPEMS-RGKGV 687
           +     G +  VV  +R+   L +S D + EM  + KGV
Sbjct: 647 VECLKAGQNYEVVLLSRRSYCLRYSADLVSEMGLKAKGV 685


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/304 (50%), Positives = 221/304 (72%), Gaps = 1/304 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMET 337
            ++T
Sbjct: 300 ALQT 303


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 238/760 (31%), Positives = 405/760 (53%), Gaps = 79/760 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKPYRKSARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 75  YHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLARLTQEAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 135 SDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATSIPTHNLGEVVDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N  I+ ++L++Y+ GPDFPTG I+V +++ ++  Y  G G  ++R +  VEE   G
Sbjct: 195 AYMKNNGITTKQLMKYVKGPDFPTGAIVV-NKDDLLSVYETGSGKIKLRGKVEVEEGKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V++EIPY +  +   + +  +A L+  K+   + DI ++S+ E +RIVL  K +  
Sbjct: 254 KKKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSKEGIRIVLELK-KDT 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR-SSFR 379
           D + L   ++  + +E  F +NM  ++ G+ P+ M L  I++  +  + E+  R+  +  
Sbjct: 313 DVENLKNMLYKKTRLEDTFGVNMLAVADGK-PETMGLKKIIEHHVDFQFELATRKYKNLL 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MV 418
            + +D++ EI +GL+ A   ID II I+R     K V                     M 
Sbjct: 372 GKELDKK-EIQEGLIKACDVIDLIIEILRGSKSIKDVKACLTNGVTDNISFKSNISKKMA 430

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+    ++ +A  
Sbjct: 431 SMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARYEDILNN----YDSMAEV 486

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E  + + K+   GR+R T  E   A++A  ++  +E++ + V++   G+ RS+ + + 
Sbjct: 487 IMEELDYYKKT--YGRKRRTVIE--NAEEAVYEEKKVEEQDVVVLMDRFGYTRSIDTATY 542

Query: 539 DLSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
           D +    +  DS  K  +    T +I + +  GK + +   ++  G  R  G  +  L +
Sbjct: 543 DRNK---ESADSENKHIIFCKNTGKICMFTNTGKMHQVKVLDIPFGKFRDKGTPVDNLSN 599

Query: 596 LNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  ++ +  ++ D       K+L  +  G    V+ +E + + R   T      +E+ +
Sbjct: 600 YDSAEENII-YICDEEQFRMGKMLFATKYGMIKKVDGAEFVVSKR---TITATKLQEEDE 655

Query: 652 LVVKVTGDHVAVVGENRKLLI---------FSIDQIPEMSRG----KGVRLQSYKDGGIS 698
           +V       +  V EN+ +++         F  +++ E  +G    +G++LQ  K   + 
Sbjct: 656 VV------SIQPVNENQNIVLQTGGGYFLRFLAEEVAEKKKGAIGVRGIKLQ--KTDILE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           +V  F+  EG T I    R    + N L   L KR G+G+
Sbjct: 708 NVYLFE--EG-TEIKVPYREKEVTLNRL--KLAKRDGMGT 742


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 200/605 (33%), Positives = 332/605 (54%), Gaps = 41/605 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN+        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   IQENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++  E+ L  +D+  VDF   ++E + EP V P K PNLL NG  GIAVGMATSI
Sbjct: 124 EARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A + N EI++ +L+EYI GPDFPTGGI+V +++ ++  Y  G G  +
Sbjct: 184 PPHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVV-NKDDLLSIYETGTGKIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
           +R +  VE+   G   +V+TEIPY +      + +  +A L  +K+   + DI ++S+ E
Sbjct: 243 IRGKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKE 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RIV+  K +  D + L   ++  + +E  F +NM  ++ G+ P+ + L  I++  +  
Sbjct: 303 GIRIVIELK-KGADVENLKNMLYKKTRLEDTFGVNMLAVADGK-PETLSLKQIIEHHVDF 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + ++  R+ +  +       E+ +GL+ A   ID II I+R     + V           
Sbjct: 361 QFDIATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEG 420

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        +   TE Q  AIL++RL  L  LE   + +E +  + +    + +LN
Sbjct: 421 IHFKTKTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIALYEDILN 480

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  E+++VK+ +S+      RRT    V  A +A  ++  IE+  +  ++  
Sbjct: 481 NYSSMSKVIIKELQKVKKEYSRV-----RRTV---VENAAEAVYEEKKIEEMEVVFLMDR 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            G+ R++   + + +    +  DS  K  L    T +I L +  G+ YT+    L  G+ 
Sbjct: 533 FGYARTIDKSTYERNK---ETADSENKYVLTCMNTGKICLFTDAGRMYTIKVQELPFGKF 589

Query: 586 HGEAI 590
             + I
Sbjct: 590 RDKGI 594


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/300 (51%), Positives = 216/300 (72%), Gaps = 2/300 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES    +RIV+
Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 207/593 (34%), Positives = 335/593 (56%), Gaps = 38/593 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++ + +L  + +D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G+G      +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQP-QQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            +R   + RR++  ++  + R+E+++GL+ A  ++  +IA+I   ++    +  ++    
Sbjct: 359 EYRELTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q DA+L + LR L  LE+  +++E   L  E+E++  LL    Q  + +  E++++
Sbjct: 419 LTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERERLQLLLQERDQLLDAMVQELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSR---ADKATLQQAMIEKE--------PIT--VVISNRGW 529
           K+ F+       RRT   E      A+KA  Q+   E +        P    ++I N G 
Sbjct: 479 KKRFATP-----RRTRLIEGGDHLLAEKAANQRPNAELQRRQALGALPSDGRLLIQNDGQ 533

Query: 530 IRSLKSHSVDLSALHFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTL 575
           ++ +      L  LH  E   L       ++ L      R+L+L+  G+   L
Sbjct: 534 VKVVSPQL--LGRLHLNEAVGLGDEPSPAQLILPIQPAPRLLVLTASGRMALL 584


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 231/718 (32%), Positives = 375/718 (52%), Gaps = 67/718 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++  E  L  +D+D VDF   ++E + EP V P K PNLL NG+ GIAVGM TS P
Sbjct: 125 ARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTSTP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A I NP+I+ E+++EYI GPDFPTGGII  +++ +++ Y  G G  ++
Sbjct: 185 PHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGIIA-NKDDLIQIYSTGMGKIKI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           R +  VE+V  G   IV+TEIPY +      + +  +  L+  K+   + DI ++S+ E 
Sbjct: 244 RGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSKEG 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  + +  D   L+  ++  + +E  F +NM  ++ GR P+ + L  I++  +  +
Sbjct: 304 IRIVLELR-KGADTQNLINLLYKKTKLEDTFGVNMLAVAEGR-PETLGLVPIIRHHVKFQ 361

Query: 369 REVLFRR-SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
            E+  R+  +   + +D++ EI +GL+ A   ID II I+R     K             
Sbjct: 362 YELATRKYQTLLKKELDKK-EIQEGLIKACDVIDLIIEILRGSKNVKDARACLTDGVTDN 420

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLE-EYQIKSELDNL--LAEKEKIDS 463
                     M S    TE Q  AIL +RL+ L  LE E  +K   D L  +AE E I  
Sbjct: 421 ITFKSAQSEKMASELRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAEYEDI-- 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                    N+       +KE+ S        R T   +   ++A +++  IE+  +  +
Sbjct: 479 -------LENRATMAKVLIKELQSYKKQYAVPRKTL--IDNLEEAVVEEKKIEEMDVVFL 529

Query: 524 ISNRGWIRSLKSHSVDLSALH-FKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +   G+     + +VD+S     KE      +  L    TD+I + +  G+ + L   +L
Sbjct: 530 MDRFGY-----AKTVDVSVYERNKEAADTENRYILTCKNTDKICIFTNKGQMHLLKVLDL 584

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEII 632
             G  R  G  I  L + + +++    F+Y          +LL  +      +V+ SE  
Sbjct: 585 PYGKFRDKGIPIDNLSNYDSSEE---NFIYIINLGAIIHSRLLFGTKTAMLKMVDGSEFD 641

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688
              R   +  K++ ++++ +V  +TG+   V+   +++ +      IPE  +G  GVR
Sbjct: 642 VAKRTTAS-TKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEASTIPEKKKGAVGVR 698


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 240/763 (31%), Positives = 416/763 (54%), Gaps = 57/763 (7%)

Query: 13  VEENVKAVSLRFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +E+N +A+ L+ A+E+     +  YA   I++RA+PDLRDG KPV RRI++ M +MGL  
Sbjct: 1   MEKNKQALLLQ-AIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKP 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSAR VGE++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA
Sbjct: 60  TSPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAA 119

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++     +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G A
Sbjct: 120 MRYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYA 179

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  HNV E+ +     I+NP+  ++ +L+ + GPDFPTGG++   +E +   Y+ G+G
Sbjct: 180 TNIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQE-LANIYQTGKG 238

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F ++A++       G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S   
Sbjct: 239 KFVIQAKYET-NTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRS 297

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RI++  K+  L  D +M  +F  + ++  F LN  V++  R P  + L     ++LA 
Sbjct: 298 GIRIIINHKD-FLSADKIMAFLFKHTQLQVNFNLNNTVIA-NRCPVRVGLLAYFDQFLAF 355

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
             E++   + + +   ++R+EI+KGL+ A   IDEII +IR   ++   K  ++ +++ T
Sbjct: 356 AHELIINSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFT 415

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK------QQWNQ-IAC 477
            NQ +AI++LRL  L         +++  L AE+++++  + + +      Q  NQ +  
Sbjct: 416 LNQAEAIVSLRLYQL-------TNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQA 468

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSH 536
           +  + K+ F++      RR     V   +K  +Q +  IE + + ++IS+ G     +  
Sbjct: 469 QFFQYKKQFNQP-----RRAQI--VGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPE 521

Query: 537 SVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            +    + FK E D L        +D   ++++ G   T+P    LS       E +   
Sbjct: 522 QLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKK 581

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             L  ++ +V A + +      +LLV++S+ G    VE S++I NT++ K+   ++  E+
Sbjct: 582 PILMEDEKLVLAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVI-NTKQIKSSCCMALRER 640

Query: 650 MKLV---VKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700
            KLV   V+  G+   V +V  +     F  ++IP +S      KG++L++  +  +   
Sbjct: 641 DKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKA--EEKVRFA 698

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG-SLVPK 742
           +  +  + L  I+S G  YN    +L   +  R  VG  L+PK
Sbjct: 699 MPLQDNDALVVINSDGGVYNFEVVEL--AVASRMSVGKKLIPK 739


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 330/564 (58%), Gaps = 25/564 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KSAR+VG+V+GK
Sbjct: 30  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKSARVVGDVMGK 89

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEARM++ A L++ 
Sbjct: 90  YHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGPAAARYTEARMSREAMLLVG 148

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + E+ VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN+ E+  AA  
Sbjct: 149 ELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVSAARW 208

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGR 263
           LI++P+ +++KL+E++ GPD PTGG+++   E +  +Y  GRG  R+RA+  +   E  R
Sbjct: 209 LINHPDATLDKLMEFVPGPDLPTGGLLLGLDE-VRRAYETGRGVVRMRAKVEIGPIEGSR 267

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSL 320
           G   I V E+PY +   ++I  +  E+   KR+  + D++D  +     R+V+  K   +
Sbjct: 268 GRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTRLVIECKV-GV 326

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV+ RRS++R 
Sbjct: 327 NPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLAHRYEVVTRRSAYRK 385

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLR 437
           +  + R+ ++ GLL+A L+ID+++ +IR  +  +     ++ RF L+E Q   IL+  LR
Sbjct: 386 RRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRRFGLSEIQATYILDTPLR 445

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L + +  ++++E + L  E  ++  LL+  K     ++ E+  V   F+       RRT
Sbjct: 446 RLTRYDRLELEAEQEKLRGEITELSRLLDDPKVLRKVVSTELAAVVRQFAAP-----RRT 500

Query: 498 TFC--EVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLSALHFKEG----D 549
           T    ++     A++    +E   +P  V++S+ G +    + S +    H + G    D
Sbjct: 501 TLVDGDLKEVLAASVPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGHRRHGRVRHD 560

Query: 550 SLKIALHAHTTDRILLLSTDGKAY 573
           +++   H+    ++LL+++ G+A+
Sbjct: 561 AVRAVAHSTARGKVLLVTSGGRAF 584


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/276 (55%), Positives = 208/276 (75%), Gaps = 3/276 (1%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE
Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249

Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
           ++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 209/702 (29%), Positives = 376/702 (53%), Gaps = 34/702 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM +    +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGG IV+  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGG-IVQGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  + + ++  +F  +D++  +  NM  +   R P  + L   L+ +L+ R+EV+ +
Sbjct: 302 ELSKEANANGILTYLFKKTDLQISYNFNMVAIHDQR-PVHVGLKAGLEAFLSFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR   N       +++ F  T+ Q +AI
Sbjct: 361 RSAYELTKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINHFEFTQAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +  +++ +++      + I  EI+ + + +S    
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHEESALKDVIREEIKAITKAYSSP-- 478

Query: 492 LGRRRTTFCEVSR--ADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKE 547
             RR     EV     D A      I +E + V++S  G+ +  SL+S     +     E
Sbjct: 479 --RRSVIEAEVENLVIDTA----VTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +TT+ + + +  G     P   L     +  GE   Q L + + ++ ++ 
Sbjct: 533 DDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIK 592

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
           A   D+  +     +VS+ G  FI + +  +I+    K K+ + +  ++ +  VV V   
Sbjct: 593 AIAVDNLEQGGAFTIVSNDG--FIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYF 650

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
                 +V ++      L ++I ++PE+ SR  GV+    +D
Sbjct: 651 QNVKRQNVLLLSHKGVGLRYAIKEVPEIGSRTSGVKAMDLRD 692


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 222/700 (31%), Positives = 377/700 (53%), Gaps = 55/700 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++ +   L
Sbjct: 75  YHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARLAKITQDAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ E+ EA  
Sbjct: 135 ADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHNLGEVIEAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +IS ++L++YI GPDFPTGGI+V +++ ++  Y  G G  ++R +  VEE+  G
Sbjct: 195 AYMKNDDISTKQLMKYIKGPDFPTGGIVV-NKDELLNIYEAGSGKIKIRGKVEVEEMKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+ +K+   + DI ++S+ E +RIV+  K R  
Sbjct: 254 KNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSKEGIRIVIELK-RGA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + E+  R+    +
Sbjct: 313 DVENLTNMLYKKTRLEDTFGVNMLAVANGR-PETMGLKKIIEHHVDFQFELATRKYQNLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
           +    R EI +GL+ A   ID II I+R     K                       M +
Sbjct: 372 KKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTENIKFKSSISKKMAA 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   +  E +  L    + + +LN+       I  ++
Sbjct: 432 MLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARYEDILNNYDSMAEVIMADL 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++K+ F++     +RRT    V  A++A  ++  IE++ +  ++   G+ +++ ++  +
Sbjct: 492 DKIKKEFAR-----KRRTA---VENAEEAVYEENKIEEQEVVFLMDRFGYAKTVDTNIYE 543

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            +    KE      K  L    T ++ + +  GK + +   +L  G  R  G  I  + +
Sbjct: 544 RN----KEAADAENKHVLSCMNTGKLCIFTNTGKMHQVKVLDLPYGKFRDKGLPIDNVSN 599

Query: 596 LNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  Q+ +  ++ D+      +LL  + +G    VE +E     ++     K+  E+++ 
Sbjct: 600 YDSTQENIV-YICDAEQMRYARLLFATKQGMIKKVEGNEFQV-AKRTIAATKLQPEDEL- 656

Query: 652 LVVKVTGDHVAVVGENRK--LLIFSIDQIPEMSRGK-GVR 688
           + V+V  D+  VV + ++   L F   ++    +G  GVR
Sbjct: 657 ISVQVVTDNQQVVLQTKEGYFLRFPAQEVSGKKKGAIGVR 696


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 167/400 (41%), Positives = 259/400 (64%), Gaps = 9/400 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  
Sbjct: 13  HDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHA 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE
Sbjct: 73  KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP 
Sbjct: 133 ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 192

Query: 194 HNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN+ E+ EA    ++N     E + E ++E + GPDFPT G+IV + + I ++Y+ GRG 
Sbjct: 193 HNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGT-QGIEDTYKTGRGS 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S++ V
Sbjct: 252 IKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV 311

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H
Sbjct: 312 GLRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYVDH 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           + +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+I
Sbjct: 370 QLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALI 409


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 212/566 (37%), Positives = 332/566 (58%), Gaps = 25/566 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KSARIVG+V+GK
Sbjct: 32  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKSARIVGDVMGK 91

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM++ A L+  
Sbjct: 92  YHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSREAMLLTG 150

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN+ E+ +AA  
Sbjct: 151 ELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVQAARW 210

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGR 263
           LI++P+ +++KL+E++ GPD PTGG+++   E +  +Y  GRG  R+R R  +   E  R
Sbjct: 211 LINHPDATLDKLMEFVPGPDLPTGGLLLGLDE-VRRAYETGRGVVRMRGRVEIGPLEGSR 269

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSL 320
           G   I VTE+PY V   ++I  I  E+   KR+  + D++D  +     R+V+  K   +
Sbjct: 270 GRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTRLVVECKV-GV 328

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L  +LAHR EV+ RRSS+R 
Sbjct: 329 NPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKELLDVFLAHRYEVVTRRSSYRK 387

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR-NED--KPKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R+ ++ GLLIA L+ID ++ +IR +ED    K  ++ RF L+E Q   IL+  LR
Sbjct: 388 RKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQATYILDTPLR 447

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F        RRT
Sbjct: 448 RLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGAP-----RRT 502

Query: 498 TFC--EVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLSALHFKEG----D 549
           T    ++     A++    +E   +P  V++S  G +    + S + +    + G    D
Sbjct: 503 TLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEARRRSGRVKHD 562

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTL 575
           +++  +H+    R+LL+++ G+A+ +
Sbjct: 563 AVRAIVHSTARGRVLLVTSAGRAFKI 588


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 155/367 (42%), Positives = 246/367 (67%), Gaps = 9/367 (2%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNF--GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           L+ GQGN+     D  S AA RYTE+R+++ +EL+L  +     D+   ++    EP + 
Sbjct: 61  LVDGQGNWRRSPDDPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKML 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P  ++++LL+ + GPD+PT
Sbjct: 121 PARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYPT 180

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
              I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P QV  +R++E+IA 
Sbjct: 181 EAEIITSRAEIRKMYEKGRGSVRMRAVWKKED-----GAVVISALPQQVSGARVLEQIAA 235

Query: 289 LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            +    +P+++D+RDES  +   R+V+ P++  +D D +M  +   +++E  + + +N++
Sbjct: 236 QMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNMI 295

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ +L+G L+ +LNI+E+I I
Sbjct: 296 GLDGRPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVIDI 355

Query: 407 IRNEDKP 413
           I NED+P
Sbjct: 356 IHNEDEP 362


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 151/305 (49%), Positives = 221/305 (72%), Gaps = 1/305 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVL 346
           N+  L
Sbjct: 300 NLLAL 304


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  323 bits (827), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 151/303 (49%), Positives = 220/303 (72%), Gaps = 1/303 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 MET 337
           ++T
Sbjct: 300 LQT 302


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  323 bits (827), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 155/279 (55%), Positives = 203/279 (72%), Gaps = 2/279 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           QV K+ +IEK+AEL+  KRI  + D+RDES  E  R+V+
Sbjct: 240 QVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVV 278


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  323 bits (827), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 215/657 (32%), Positives = 350/657 (53%), Gaps = 71/657 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 17  MQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E+ L
Sbjct: 77  YHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMRYTEARLEKLTQEVFL 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP HN+ E+ +A  
Sbjct: 137 EDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIPPHNLGEVVDAVK 196

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +IS   L+ Y+ GPDFPTGGI+V +++ +V+ Y  G G  R+R R  +E++  G
Sbjct: 197 AYMKNNDISTRGLMRYLKGPDFPTGGIVV-NKDDLVKIYESGTGKLRIRGRVEIEKLKGG 255

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  IA L+  K+   + DI ++S+ E +RIVL  K R  
Sbjct: 256 RQQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSKEGIRIVLELK-RDA 314

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ +     LK+ +AH  + +F  +S + 
Sbjct: 315 DVENLTNMLYKKTRLEDTFGVNMLAVADGR-PETLG----LKQIIAHHVDFVFEVNSRKY 369

Query: 381 QAI----DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV--------------- 418
             +      + EI +GL+ A   ID II I+R   + D+ K  +                
Sbjct: 370 TTLLAKEQEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCLTDGITEGIKFKTKTSE 429

Query: 419 ---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                   TE Q  AIL++RL  L  LE   +  E +  +      + +LN+       I
Sbjct: 430 KAAKTLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIAAYEDILNNYDSMAAVI 489

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ ++K+      + G +R T  E   A++A  ++  +E+  +  ++   G++R +  
Sbjct: 490 MGELDQIKK------EYGSKRKTSIE--NAEEAVYEEKKMEETEVCFLMDRFGYMRLIDK 541

Query: 536 HSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578
           ++ + +  A H +     +       TD+I + +  GK +T               +PA 
Sbjct: 542 NAYERNKDAAHAES----RYVFTCMNTDKICIFTDTGKLHTVKAEDIPLVRFRDKGVPAD 597

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIAN 634
           NL +     E I  +  L+        FV ++  CKL+    KG+ F   +  I++ 
Sbjct: 598 NLGNYDSTSEQILYVAPLSQVAASTVLFVTENGMCKLV----KGDEFRASKRTIVST 650


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  323 bits (827), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 152/309 (49%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVLSMGR 350
           N+  L  G+
Sbjct: 300 NLLALVDGQ 308


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 242/366 (66%), Gaps = 5/366 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S+   LE  ++ YA+S I  RA+P+ RDG KPV   +++     GL     ++KSA
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPV-TWVLYGAYTSGLTHDKPYRKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSA A RYTEAR+
Sbjct: 77  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAGAMRYTEARL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG+SGIAVGMAT+IP HN+
Sbjct: 137 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+      L+ N   +IE+L E+I GPDFPT   I+     I E +  GRG   VRA+ 
Sbjct: 197 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAKS 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + D+RDES  E +RIV+  
Sbjct: 256 EIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R + P++L+  ++  + ++T F + M  L +   P+V+ L   L+ ++ H+ ++L R+
Sbjct: 316 K-RDVIPEVLLNQLYKSTQLQTNFSVAMLAL-VNNQPKVLNLKEALQIYIDHQFDILLRK 373

Query: 376 SSFRMQ 381
           ++F ++
Sbjct: 374 TNFELK 379


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/306 (50%), Positives = 220/306 (71%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+I  H + E+ E  LA  +NPEI+ ++L+EY
Sbjct: 122 AEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELMEY 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 182 IPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 300

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 301 INLLAL 306


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 228/711 (32%), Positives = 380/711 (53%), Gaps = 70/711 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 16  MRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+T+   E  L
Sbjct: 76  YHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEAYL 135

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D +DF   ++E + EP+V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 136 ADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIPTHNLGEVIDAVK 195

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N  I+ ++L++YI GPDFPTGGI+V +++ + E Y  G+G  ++R +  VE++  G
Sbjct: 196 AYMKNDAITTKQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGQGKIKIRGKVEVEDLKGG 254

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+  K+   + DI ++S+ E +RIVL  K +  
Sbjct: 255 KKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGIRIVLELK-KGA 313

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR-SSFR 379
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+  +  
Sbjct: 314 DVENLKNMLYKKTRLEDTFGVNMLAVANGR-PETLGLKAIIEHHVDFQFELTTRKYKTLL 372

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MV 418
            + +D++ E+ +GL+ A   ID II I+R     K                       M 
Sbjct: 373 AKELDKK-EVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENIKFKSQISKKMA 431

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN     ++ +A  
Sbjct: 432 AMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYEDILN----HYDSMATL 487

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I E  + F K  + GR+R T  E   A+ A  ++  +E++ +  ++   G+ +++    V
Sbjct: 488 IMEELDAFKK--EYGRKRRTAIE--NAEAAVFEEKKVEEQEVIFLMDRFGYAKTV---DV 540

Query: 539 DLSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            +   + +  DS  K  ++   T +I L +  GK + +   +L  GR   + + +    N
Sbjct: 541 SVYERNKEAADSENKYVVNCLNTGKICLFTDTGKMHQIKVMDLPYGRFRDKGVPIDNVSN 600

Query: 598 HN---QDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++   + IVT          KLL  + +G    V+ SE     R   T      +E+  L
Sbjct: 601 YSSSEEQIVTICDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKR---TIAATKLQEEDAL 657

Query: 653 VVKVTGDHVAVVGENRKLLI---------FSIDQIPEMSRG----KGVRLQ 690
           +      HV +V EN+ +++         F   +IPE  +G    +G++LQ
Sbjct: 658 I------HVGMVQENQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQ 702


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 339/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P   ++ L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + F +     R  I++GL+     +D++IA IR ++DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   ++   + AT     +  E + V +S  G+++  SL+S+ +VD +    K  D
Sbjct: 479 -RRSSIQAKIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKAND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGSDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 239/763 (31%), Positives = 413/763 (54%), Gaps = 57/763 (7%)

Query: 13  VEENVKAVSLRFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +E+N +A+ L+ A+E+     +  YA   I++RA+PDLRDG KPV RRI++ M +MGL  
Sbjct: 1   MEKNKQALLLQ-AIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKP 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSAR VGE++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA
Sbjct: 60  TSPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAA 119

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++     +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G A
Sbjct: 120 MRYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYA 179

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  HNV E+ +     I+NP+  ++ +L+ + GPDFPTGG++   +E +   Y+ G+G
Sbjct: 180 TNIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQE-LANIYQTGKG 238

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F ++A++       G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S   
Sbjct: 239 KFVIQAKYET-NTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRS 297

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RI++  K+  L  D +M  +F  + ++  F LN  V++  R P  + L     ++LA 
Sbjct: 298 GIRIIINHKD-FLSADKIMAFLFKHTQLQVNFNLNNTVIA-NRCPVRVGLLAYFDQFLAF 355

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
             E++   + + +   ++R+EI+KGL+ A   IDEII +IR   ++   K  ++ +++ T
Sbjct: 356 AHELIINSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFT 415

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK------QQWNQ-IAC 477
            NQ +AI++LRL  L         +++  L AE+++++  + + +      Q  NQ +  
Sbjct: 416 LNQAEAIVSLRLYQL-------TNTDIKVLFAEQKELEQTIQTAECLIAKPQARNQLLQA 468

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSH 536
           +  + K+ F++      RR     V   +K  +Q +  IE + + ++IS+ G     +  
Sbjct: 469 QFFQYKKQFNQP-----RRAQI--VGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPE 521

Query: 537 SVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            +    + FK E D L        +D   ++++ G   T+P    LS       E +   
Sbjct: 522 QLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKK 581

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             L  ++ +V A + +      +LLV++S+ G    VE S++I NT++ K+   ++  E+
Sbjct: 582 PILMEDEKLVLAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVI-NTKQIKSSCCMALRER 640

Query: 650 MKLV-----VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700
            KLV      K     V +V  +     F  ++IP +S      KG++L++  +  +   
Sbjct: 641 DKLVNAFVQTKREPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKA--EEKVRFA 698

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG-SLVPK 742
           +  +  + L  I+S G  YN    +L   +  R  VG  L+PK
Sbjct: 699 MPLQDNDALVVINSDGGVYNFEVVEL--AVASRMSVGKKLIPK 739


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 338/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P+  +  L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVVNAILYLLKHPQADLADLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++AHRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQ-PKLLGLKAMLEAYVAHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + + +     R  I++GL+     +D++IA IR + DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   E+   + AT     +  E + V +S  G+++  SL+S+ +VD      K  D
Sbjct: 479 -RRSSIQAEIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLKPND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 237/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 339/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P   ++ L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + F +     R  I++GL+     +D++IA IR ++DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   ++   + AT     +  E + V +S  G+++  SL+S+ +VD +    K  D
Sbjct: 479 -RRSSIQAKIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKAND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 339/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P   ++ L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + F +     R  I++GL+     +D++IA IR ++DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQKEAAQLAKAIAEYQDVLARPAARDRVIEGELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   ++   + AT     +  E + V +S  G+++  SL+S+ +VD +    K  D
Sbjct: 479 -RRSSIQAKIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKAND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 339/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P   ++ L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + F +     R  I++GL+     +D++IA IR ++DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   ++   + AT     +  E + V +S  G+++  SL+S+ +VD +    K  D
Sbjct: 479 -RRSSIQAKIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKAND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/302 (50%), Positives = 219/302 (72%), Gaps = 1/302 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ET 337
           +T
Sbjct: 300 QT 301


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 339/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P   ++ L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + F +     R  I++GL+     +D++IA IR ++DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   ++   + AT     +  E + V +S  G+++  SL+S+ +VD +    K  D
Sbjct: 479 -RRSSIQAKIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKAND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/293 (51%), Positives = 213/293 (72%), Gaps = 1/293 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I++L+EYI GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           A+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++T F
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSF 292


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/279 (55%), Positives = 202/279 (72%), Gaps = 2/279 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           QV K+ +IEK+AEL   KRI  + D+RDES  E  R+V+
Sbjct: 240 QVNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVV 278


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 236/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 232/747 (31%), Positives = 389/747 (52%), Gaps = 79/747 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 17  MQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ +V  E  L
Sbjct: 77  YHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYTEARLQKVTQEAFL 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ V F   ++E + EP V P + PNLL NG  GIAVGM TSIP HN+ E+ +A +
Sbjct: 137 ADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVTSIPPHNLGEVIDAVI 196

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A I N  I+ E+L++YI GPDFPTGGI+V +++ + + Y+ G G  R+R +  VE+   G
Sbjct: 197 ATIKNSNITTEELMQYIQGPDFPTGGIVV-NKDELTDIYKTGMGKIRIRGKVDVEKGKNG 255

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSL 320
              +V++EIPY +      + +  +A L+  K+   + DI ++S++D +RIVL  + ++ 
Sbjct: 256 KESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSKDGIRIVLELR-KNA 314

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L+  ++  + +E  F +NM  +S GR P+ + L  I++  +  + EV  R+    +
Sbjct: 315 DTNNLINMLYKKTRLEDTFSVNMLAVSDGR-PETLGLKKIIEHHIDFQFEVNTRKYQTLL 373

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS------RFS--------- 422
           +    + EI +GL+ A   ID II I+R   + ++ K  +V+      RF          
Sbjct: 374 EKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEGIRFKSRTSKKQAE 433

Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               T+ Q  AIL +RL  L  LE   ++ E D  +    + + LLN+      QI  E+
Sbjct: 434 QLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIARYEDLLNNYGSMAKQIIKEL 493

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + +K+ ++       R+T    V   ++A  ++  +E+  +  ++   G+ R++ + + +
Sbjct: 494 QSLKKEYAVP-----RKTV---VENGEEAVYEEKKLEEMEVVFLMDRFGYARTVDAQTYE 545

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGR 584
            +     + +S +  +    TD+I L +  G  + +               P  N  +  
Sbjct: 546 RNK-ETADAES-RYVIPCMNTDKICLFTDTGSQHLIRVLDVPFGKFRDKGKPIDNFCNYS 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLK 643
              EAI  +  L   +  ++ FV+  T + +V   +G+ F V +  I A   ++G   + 
Sbjct: 604 SAREAIVYVESLQRVK--MSLFVF-GTAQGMVKQVEGSEFDVAKRTIAATKLQEGDRLIS 660

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL--------QS 691
           V   ++ +  V  T        E+   L   I  IP   +G    +G+RL          
Sbjct: 661 VHRMDEAETAVFKT--------EHDICLRIRIGDIPLKKKGAIGVRGIRLGEGDRVEAMY 712

Query: 692 YKDGGISDVICFKICE-GLTWIDSAGR 717
           Y DG     I +K  E  L  +  AGR
Sbjct: 713 YPDGEKDKTILYKEKEIRLDRLKVAGR 739


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 338/602 (56%), Gaps = 16/602 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 4   QIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 64  AKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 124 LSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  A L L+ +P+  +  L++Y+ GPDFPTGGII +  + I ++Y  GRG   VR+R
Sbjct: 184 LREVFNAILYLLKHPQADLADLMQYVKGPDFPTGGII-QGLDGIKQAYETGRGKIVVRSR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V+  
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++AHRR+V+ RR
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQ-PKLLGLKAMLEAYVAHRRDVVTRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + + +     R  I++GL+     +D++IA IR + DK   K  +V +F  +E Q +AI+
Sbjct: 362 TRYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      
Sbjct: 422 SLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEYGDD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLSALHFKEGD 549
            RR +   E+   + AT     +  E + V +S  G+++  SL+S+ +VD      K  D
Sbjct: 479 -RRSSIQAEIETLEVAT--TVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLKPND 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV 607
                    T   + +++  G     P   +   R    GE +   + L  ++ ++  F 
Sbjct: 536 LAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLAVFA 595

Query: 608 YD 609
           +D
Sbjct: 596 FD 597


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 220/304 (72%), Gaps = 1/304 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 181 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 239

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 240 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 299

Query: 343 MNVL 346
           +  L
Sbjct: 300 LLAL 303


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 237/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 237/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 287/461 (62%), Gaps = 11/461 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+ G I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPS-GGIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D+ D      
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH-NGT 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L  W++HRR
Sbjct: 314 RIVIEIKT-GFDPNAVLAQLFKHTPLQESFTINNVALVDGR-PHTMGLRELLDVWISHRR 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR   + D  K  ++  F L E 
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEI 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S
Sbjct: 432 QAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSS 472


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 222/726 (30%), Positives = 390/726 (53%), Gaps = 34/726 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           KA+   FA+   +  YA   I++RA+PDLRDG KPV RRI++ M +MGL     +KKSAR
Sbjct: 11  KAIEEVFAVS--FSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA RYTE R++
Sbjct: 69  AVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
                +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+I  HN  
Sbjct: 129 LYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTN 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ ++    ID P   ++++L+ + GPDFPTGG  V   +S+ + Y+ G+G F ++A++ 
Sbjct: 189 ELLDSLCLRIDQPNCELKQILKIVKGPDFPTGG-NVYFEKSLSDIYQAGKGKFIIQAKY- 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
             EV +    I +T+IPY+  K+ ++++I E+I   ++  +E + D S  + +RI++  K
Sbjct: 247 --EVNKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHK 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  L  + +M  +F  + ++  F LN  V++  R P  + L   L  +L    E++  ++
Sbjct: 305 D-FLPAEKIMAFLFKHTQLQVNFNLNNTVIA-NRFPIQIGLLSYLDHFLKFCHELIINKA 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++   +R+EI+ GL+ A   ID+II +IR   ++   +  ++  F  T NQ +AI++
Sbjct: 363 KYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDS--LLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LRL  L   + +++  E + L  EK  I S  L+ S K +   +  +    K+ F +   
Sbjct: 423 LRLYQLTNTDIFELNQEQNEL--EKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQ--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDS 550
             +RR+  C      K   +  +IE +   V+I+  G     +S+ +  S   FK E D+
Sbjct: 478 --QRRSQICGFINQKKVE-ESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDT 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNHNQDIVTAFV 607
           +  A     TD+I ++++ G    +P   L     +  A  +    I L +   +    +
Sbjct: 535 IIFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTM 594

Query: 608 YDSTCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAV 663
                 +LV++SK G    ++ +++  N +  K  L +S  +K  LV   ++     + +
Sbjct: 595 NSVNQPILVLTSKLGMVKRIDLTKL--NIKPLKATLCISLRDKDHLVSAFLQQDDKLICL 652

Query: 664 VGENRKLLIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNR 721
           V ++    +F  ++IP + S+G GV+    K +  I  V+ F+  E L  I S G   N 
Sbjct: 653 VSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINL 712

Query: 722 SENDLL 727
            + +L+
Sbjct: 713 KQTELV 718


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 287/461 (62%), Gaps = 11/461 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+ G I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPS-GGIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D+ D      
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH-NGT 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L  W++HRR
Sbjct: 314 RIVIEIKT-GFDPNAVLAQLFKHTPLQESFTINNVALVDGR-PHTMGLRELLDVWISHRR 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR   + D  K  ++  F L E 
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEI 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S
Sbjct: 432 QAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSS 472


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 222/708 (31%), Positives = 374/708 (52%), Gaps = 66/708 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  E+ +  +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + NP+I+  ++++YI GPDFPTGG IV +++ +   Y  G+G  ++R R  +E+   G
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGG-IVANQDDLAAIYETGQGKIKIRGRIEIEKGKAG 260

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +  L+ +K    + DI ++S+ E +RIVL  K +  
Sbjct: 261 KDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELK-KGA 319

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+    +
Sbjct: 320 DVEALKNLLYKKTKLEDTFGVNMLAVANGR-PETLGLVPIIRHHVNFQYEIAKRKYETLL 378

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPKPVMVS 419
                + EI +GL+ A   ID II I+R                      + K    M +
Sbjct: 379 AKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKASEAMAA 438

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L         I  E+
Sbjct: 439 QLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKVIMKEL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +  ++ +++      RRT   E+   ++A + +  +E   + +++   G+++++ + + D
Sbjct: 499 KAFRKEYARD-----RRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTSTYD 550

Query: 540 LSALHFKEGDSL----KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
                 +  D+     K+ L     D++ + + +G     K   LP G     R  G  I
Sbjct: 551 ------RNKDTADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKF---RDKGTPI 601

Query: 591 QLLIDLNHN-QDIV-TAFVYDSTCKLLVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSE 647
             + + + + +DIV  A + D     L+  +K     +V+ +E +  TRK     K+  +
Sbjct: 602 DNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVV-TRKTSQATKLMDD 660

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG----KGVRL 689
           +++ L V +  ++  +V  ++K +   ID   IPE  +     +G+RL
Sbjct: 661 DEL-LFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRL 707


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 222/708 (31%), Positives = 374/708 (52%), Gaps = 66/708 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  E+ +  +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + NP+I+  ++++YI GPDFPTGG IV +++ +   Y  G+G  ++R R  +E+   G
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGG-IVANQDDLAAIYETGQGKIKIRGRIEIEKGKAG 260

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +  L+ +K    + DI ++S+ E +RIVL  K +  
Sbjct: 261 KDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELK-KGA 319

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+    +
Sbjct: 320 DVEALKNLLYKKTKLEDTFGVNMLAVANGR-PETLGLVPIIRHHVNFQYEIAKRKYETLL 378

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPKPVMVS 419
                + EI +GL+ A   ID II I+R                      + K    M +
Sbjct: 379 AKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKASEAMAA 438

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L         I  E+
Sbjct: 439 QLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKVIMKEL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +  ++ +++      RRT   E+   ++A + +  +E   + +++   G+++++ + + D
Sbjct: 499 KAFRKEYARD-----RRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTSTYD 550

Query: 540 LSALHFKEGDSL----KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
                 +  D+     K+ L     D++ + + +G     K   LP G     R  G  I
Sbjct: 551 ------RNKDTADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKF---RDKGTPI 601

Query: 591 QLLIDLNHN-QDIV-TAFVYDSTCKLLVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSE 647
             + + + + +DIV  A + D     L+  +K     +V+ +E +  TRK     K+  +
Sbjct: 602 DNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVV-TRKTSQATKLMDD 660

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG----KGVRL 689
           +++ L V +  ++  +V  ++K +   ID   IPE  +     +G+RL
Sbjct: 661 DEL-LFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRL 707


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEGKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 237/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I++ +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/312 (48%), Positives = 225/312 (72%), Gaps = 2/312 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 188 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 246

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 247 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 306

Query: 343 MNVLSMGRVPQV 354
           +  L  G+ P+V
Sbjct: 307 LLALVDGQ-PKV 317


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 287/461 (62%), Gaps = 11/461 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+ G I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPS-GGIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE---DIRDESAEDV 309
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D+ D      
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRH-NGT 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L  W++HRR
Sbjct: 314 RIVIEIKT-GFDPNAVLAQLFKHTPLQESFTINNVALVDGR-PHTMGLRELLDVWISHRR 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RRS FR +    R+ ++ GLL+A L+IDE+I +IR   + D  K  ++  F L E 
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEI 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           Q   IL+LRLR L K+   ++++E D+LL + E+++ +L+S
Sbjct: 432 QAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSS 472


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 222/708 (31%), Positives = 374/708 (52%), Gaps = 66/708 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARIVG+ +GK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  E+ +  +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + NP+I+  ++++YI GPDFPTGG IV +++ +   Y  G+G  ++R R  +E+   G
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGG-IVANQDDLAAIYETGQGKIKIRGRIEIEKGKAG 260

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +  L+ +K    + DI ++S+ E +RIVL  K +  
Sbjct: 261 KDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELK-KGA 319

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+    +
Sbjct: 320 DVEALKNLLYKKTKLEDTFGVNMLAVANGR-PETLGLVPIIRHHVNFQYEIAKRKYETLL 378

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPKPVMVS 419
                + EI +GL+ A   ID II I+R                      + K    M +
Sbjct: 379 AKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKASEAMAA 438

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L         I  E+
Sbjct: 439 QLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKVIMKEL 498

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +  ++ +++      RRT   E+   ++A + +  +E   + +++   G+++++ + + D
Sbjct: 499 KAFRKEYARD-----RRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTSTYD 550

Query: 540 LSALHFKEGDSL----KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590
                 +  D+     K+ L     D++ + + +G     K   LP G     R  G  I
Sbjct: 551 ------RNKDTADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKF---RDKGTPI 601

Query: 591 QLLIDLNHN-QDIV-TAFVYDSTCKLLVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSE 647
             + + + + +DIV  A + D     L+  +K     +V+ +E +  TRK     K+  +
Sbjct: 602 DNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVV-TRKTSQATKLMDD 660

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG----KGVRL 689
           +++ L V +  ++  +V  ++K +   ID   IPE  +     +G+RL
Sbjct: 661 DEL-LFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRL 707


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 164/351 (46%), Positives = 237/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KR+  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
 gi|332311732|gb|EGJ24827.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes str. Scott A]
          Length = 819

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 395/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 297/477 (62%), Gaps = 5/477 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 24  VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 83

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 84  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 144 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I ++Y  G+G   V
Sbjct: 204 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIKKAYESGKGRIIV 262

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 322

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S GR P++M +  I+  +L H+ EV+
Sbjct: 323 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVV 381

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  ++  +  TE Q +
Sbjct: 382 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 441

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F
Sbjct: 442 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKF 498


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 393/703 (55%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I  
Sbjct: 537 RDHAIFIQKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRA 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKDDDELLNVYLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +   N   L + I +IPE  +R  GV+  + K G I
Sbjct: 653 DGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDI 695


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/306 (49%), Positives = 220/306 (71%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R    ++Y+ GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 182 IPGPDFPTAGQIL-GRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA  +  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 241 KLIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 300

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 301 INLLAL 306


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  320 bits (820), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 175/479 (36%), Positives = 293/479 (61%), Gaps = 5/479 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAID-NMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR ++DK   K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKK 478


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 210/703 (29%), Positives = 394/703 (56%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINRKR-PELMGIIPMLDAYIDHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAASLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+  ++++  V  +
Sbjct: 597 AIAIQAFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKDDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +  +N   L +SI +IPE  +R  GV+  + K   I
Sbjct: 653 DGSEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDI 695


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  319 bits (818), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 336/595 (56%), Gaps = 43/595 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++  E+ L  +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS+  L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVV-NKDDLRKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           R +  VE++  G   +V+TEIPY +  +   + +  +A L+  K+   + DI ++S+ E 
Sbjct: 244 RGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSKEG 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  K +  D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +   
Sbjct: 304 IRIVLELK-KDTDVENLTNMLYKKTRLEDTFGVNMLAVADGR-PETLSLKQIIEYHVDFV 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV------- 418
            E+  R+    +     + E+ +GL+ A   ID II I+R   N ++ K  +V       
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      ++   TE Q +AIL++RL  L  LE   +++E      E  K  +L   
Sbjct: 422 KFKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAE----YQETMKNIALYKD 477

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             + ++ +A  I  +K++ +   + GR+R T   V  A++A  ++  +E+  +  ++   
Sbjct: 478 ILENYDSMAAVI--IKDMDAIKKEYGRKRRT--AVENAEEAVYEEKKMEEMKVCFLMDRF 533

Query: 528 GWIRSLKSHSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           G+++ +  ++ + +  A+H    +  K   +   TD+I + +  GK +T+ A ++
Sbjct: 534 GYMKLIDQNAYERNKEAIH----NESKYVFNCMNTDKICIFTDKGKMHTIKAADI 584


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/306 (48%), Positives = 217/306 (70%), Gaps = 1/306 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRRI++AM+++G+     FKKSARIVGEVIGK HPHGD +VY++
Sbjct: 2   IVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+++++  IL+ + +D +D++D 
Sbjct: 62  MVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQDN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NPE++ ++L
Sbjct: 122 YDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQEL 181

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           ++ I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   IV+ EIPYQV
Sbjct: 182 MDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQV 240

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R     +L+  ++  + ++T
Sbjct: 241 NKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQT 300

Query: 338 RFPLNM 343
            F +N+
Sbjct: 301 SFGINL 306


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 229/731 (31%), Positives = 377/731 (51%), Gaps = 82/731 (11%)

Query: 12  LVEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + E+N + +   +A  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ + 
Sbjct: 1   MQEKNDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA 
Sbjct: 61  RPYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAM 120

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTEAR+ ++  E+ L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGMA
Sbjct: 121 RYTEARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +   A + N +I+ + L+ YI GPDFPTGGI+V +++ + + Y  G G
Sbjct: 181 TSIPPHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVV-NQDELRKIYETGSG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDES 305
             R+R +  +E+   G   +V+TEIPY +      + +  +A L+ +K+   + DI ++S
Sbjct: 240 KIRLRGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQS 299

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           + E +RIVL  + R  D D L+  ++  + +E  F +NM  ++ GR P+ + L  +++  
Sbjct: 300 SKEGIRIVLELR-RDTDVDNLVNMLYKKTRLEDTFGVNMLAVADGR-PETLSLKQVVEHH 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS-- 419
           +  + E+  R+    +     + E+ +GL+ A   ID II I+R   N+ + K  + +  
Sbjct: 358 VEFQFEIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGE 417

Query: 420 ----RFS------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               RF              TE Q  AIL +RL  L  LE   +  E +  L    K + 
Sbjct: 418 TEGIRFKSKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIAKYED 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LLN+       I  E+  VK+ F      GR+R T  E   A +A  ++  IE+  +  +
Sbjct: 478 LLNNYDSMAQAIMNELDAVKKEF------GRKRRTALE--NAQEAVFEEKKIEEMEVWFL 529

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEG--DSLKIALHAHTTDRILLLSTDGKAYT------- 574
           +   G+++++   + + +    KE      K       TDRI + +  G+ +        
Sbjct: 530 MDRFGYVKTIDRQTYERN----KENACSESKYLFSCMNTDRICIFTDAGRMHAVKVLDIP 585

Query: 575 --------LPAGNLLSGRGHGEAIQLLI---DLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
                   +P  NL +     E I  +    +L H+Q +       +T K ++    G  
Sbjct: 586 LVKFRDKGVPVDNLSNYNSQEEQILYVAGMEELKHSQLLF------ATQKAMLKQVSGQE 639

Query: 624 FIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           F V +  I+A    +G   + V+  + M+ VV        +       L F   ++PE  
Sbjct: 640 FDVTKRTIMATKLTEGDKVIFVAPSDAMEYVV--------LQSTQGYFLRFLKQEVPEKK 691

Query: 683 RG----KGVRL 689
           +G    +G+RL
Sbjct: 692 KGAIGVRGMRL 702


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/351 (47%), Positives = 236/351 (67%), Gaps = 4/351 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  II   R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I D S  + + IV+  KN ++  ++++ +++ L+ M+  F +NM  L  G+ P++  L 
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLK 297

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN
Sbjct: 298 QIIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRN 348


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/525 (33%), Positives = 309/525 (58%), Gaps = 13/525 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F   F+KS
Sbjct: 6   NIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTEAR
Sbjct: 66  AKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +D++ VD    +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 126 LSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ +P  S+E L+ ++ GPDFPTGGII +  + I  +Y+ GRG   VR++
Sbjct: 186 LGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGGII-QGVDGIKSAYKNGRGRIVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +  +  G   I ++EIPY+V K+ L++KI E+ + K +  + ++RDES  D   +   
Sbjct: 245 TEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  +   ++  +   +D++  +  NM  +   R P+ + L   L+ +L H+ E++ +R
Sbjct: 305 LSKDANVQGILAYLLKKTDLQVTYNFNMVAIHNLR-PERVGLKTALQAFLDHQVEIITKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432
           + + ++    R  I+ GL+ A   +DE+IA IR +ED+   K  +V ++  T  Q +AI+
Sbjct: 364 TEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQNLVDKYEFTLEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q+++E + L       +++L+  K    ++  E + +K+ ++     
Sbjct: 424 TLQLYRLTNTDVTQLQAEFEELSDRIMHFNAILSEPKVLRQELRQEFKSIKKEYNSP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS 535
              R T  E    +        +  E + V++S  G+++  SL+S
Sbjct: 481 ---RLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVKRSSLRS 522


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 339/639 (53%), Gaps = 56/639 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+K +++   L+  +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L     
Sbjct: 1   MSEDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+I G+  G  HPHG+  +Y +LV +AQP+  R PL+  QGNFG+++GD  AA RY
Sbjct: 61  HMKCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +   ++  ++++ VDF   Y+E  +EPVVFP+ FPNLL NG +GIAVGMAT++
Sbjct: 121 TEARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++EI +   A IDNPEI+++ L++Y+ GPDFPTG  ++ +   I + +  G G  R
Sbjct: 181 PPHNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLLGT-AGIRDYFETGHGSLR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    + E G     I++T IPY V ++ L ++I EL   K IP +  IRDES E+ R+
Sbjct: 240 IRGHAEISETGTKPQ-IIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESDENTRV 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  + R   P +++ +++  + +ET F ++M  +   R P+++ L   +  ++ HRREV
Sbjct: 299 VVDLR-REARPQVVLNNLYKQTSLETTFSVHMLAID-NRRPRLLSLKDAISCYIEHRREV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------- 411
           + RR+ + ++  +   E L+ LL+A   +D+ I +IR                       
Sbjct: 357 IIRRTKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQ 416

Query: 412 ------KPKPVMVS-RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                 + +P + S R+  T+ QV  IL+LRL  L  LE  +++++ + LL     +  +
Sbjct: 417 SLGILIRSQPSIRSGRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDI 476

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    +    I  E+  ++  +      G  R T  E +  +     + +I  E   V I
Sbjct: 477 LAKESRVLTIIKDELGNIRAKY------GTERLTKIEAAEGEINI--EDLIANERNIVTI 528

Query: 525 SNRGWI---------------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           ++RG++               + LK      +A      D ++    A   D ++  +  
Sbjct: 529 THRGFVKRTLASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNT 588

Query: 570 GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606
           G+ Y      +  ++  G G +I+ L++L   + I    
Sbjct: 589 GRVYVERVYQVPEMARTGKGRSIKNLLNLRAEEKIAAVL 627


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 206/645 (31%), Positives = 356/645 (55%), Gaps = 42/645 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T++E+N+  V     + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L  
Sbjct: 13  TETIIEKNMVDV-----MSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYN 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             AF+KSA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA
Sbjct: 68  NQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G A
Sbjct: 128 MRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI NP IS+E+L + + GPDFPTGG+I    E I +++  G+G
Sbjct: 188 TEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVI-HGIEGIAQAFETGQG 246

Query: 249 GFRVRARW---CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              + +R+     E        I + E P+ V KS+L+  I  L+I K I  ++++RD+S
Sbjct: 247 KINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQS 306

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGR-VPQVMPLDGIL 361
             E + I L      L+ +   E+I  +++S  + R   N N++++    P++M L  +L
Sbjct: 307 NREGISIYL-----ELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
             +L+H +++  +   F ++  + R+EI++G +      DE+I +I+N D  K  ++   
Sbjct: 362 FTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEAL 421

Query: 419 -SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  T  Q  AI  LRL  L K+++ + ++E   L  +  +   LL +  +    I  
Sbjct: 422 EKTFGFTNIQATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIE 481

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIR--S 532
           +++++K+ ++K          F E+S+ DK   +   + + + E     +S  G+I+  S
Sbjct: 482 QLKDIKKEYAKP--------RFSEISQ-DKIRTEINTKLLAKNEDFYFFLSKEGYIKRIS 532

Query: 533 LKSHSVD-LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
            K+ S +  S    K+ D++      ++  +++  +  G  + + A  L     +  G  
Sbjct: 533 KKAFSSNGFSGFKLKDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENGWKDIGNH 592

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI 631
           I  L+ L +N+ I+       +++  + ++++ KG A  VE  E 
Sbjct: 593 ISSLVALENNERIIRVMEIESFNTYSRFIILTKKGMAKKVEIQEF 637


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 208/702 (29%), Positives = 387/702 (55%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E +++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL +  G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
               DS     + L V+  G    + +   I N +     K    +K+  +E + + +  
Sbjct: 597 VIAIDSFTEQKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKEDELLNVYLID 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
             + + +  +N   L + I +IPE  +R  GV+  + K G +
Sbjct: 653 GTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQGDV 694


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 233/703 (33%), Positives = 372/703 (52%), Gaps = 60/703 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     +KSARIVG+ +GK
Sbjct: 25  MQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSARIVGDTMGK 84

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 85  YHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 144

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIPSHN+ E+ +A  
Sbjct: 145 RDLDK-TVDFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPSHNLGEVIDAVQ 203

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A IDNP+ISI KL+EY+ GPDFPTGGII  ++  +   Y  G G  ++R +  VE   R 
Sbjct: 204 AYIDNPDISICKLMEYLPGPDFPTGGIIA-NKSDLPSIYETGAGKIKLRGKIEVELGKRK 262

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +    +V+TEIPY +  S   + +  +A+L+ +K++  + DI ++S  E +RIVL  + +
Sbjct: 263 ADKDKLVITEIPYTMVGSGINKFLVDVADLVESKKLSDVVDISNQSNKEGIRIVLELR-K 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  + +E  + +NM  ++ GR P+ + L GILK +L  + +   R+   
Sbjct: 322 DADVEKIRNILYKKTKLEDTYGVNMLAIADGR-PETLNLKGILKNYLDFQYKNATRKYQT 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFS------------ 422
            ++    + EI +GL+ A   ID IIA++R     +D    +M    S            
Sbjct: 381 LLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAKNCLMTGDISNINFKVKGFEED 440

Query: 423 -----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                 TE Q  AIL +RL  L  LE  Q++ E    LA+  + + +L++ K     I  
Sbjct: 441 AKTLHFTEKQATAILEMRLYKLIGLEILQLEKEYKETLAKIAEYEKILSNRKFMDKVIKD 500

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++ ++K+ ++       RRT    +    +A   +  I    +T V+   G+ + L   +
Sbjct: 501 DLDQIKKEYATP-----RRTL---IEDGKEAVYDETAIPVSEVTFVMDRFGYCKILDKAT 552

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
            D +    +  +     ++   TD+I + +  G     KA  +P G L   R  G  I  
Sbjct: 553 YDRNKETIETENPY--VVNCLNTDKICIFTNTGNLHQVKAQDIPGGKL---RDKGTPIDN 607

Query: 593 LIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEE 648
           L   +  ++ +    +       K L  + +    +V   E   N R    T L    ++
Sbjct: 608 LSKFDGTREEIVYLCHAEGLKGRKFLFATKQALVKLVPGEEFETNNRTVAATKL---PDD 664

Query: 649 KMKLVVKVTGDHVAVVGENRK--LLIFSIDQIPEMSR-GKGVR 688
            M L V++      VV +      L F  ++IPEM +  +GVR
Sbjct: 665 DMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPEMKKNARGVR 707


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+P++RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++DTY+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + +PVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 122 SERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 182 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFG 300

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 301 INLLAL 306


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 211/664 (31%), Positives = 350/664 (52%), Gaps = 31/664 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N+  L+E+ + +      LEE Y+ YA+S I  RAIP++ DGFKP HR++++ M +MG
Sbjct: 20  IENAGVLIEQPIVST-----LEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMG 73

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGN-IDG 123
           L  GA   KSA +VG  + KL+PHGDQ++Y++LVRL++      +P +  +GNFG     
Sbjct: 74  LLTGAR-TKSANVVGATM-KLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSR 131

Query: 124 DSA-AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           D A AA RYTE ++  +A  + + +DED VD  D Y+    EP +FP  FP++L N   G
Sbjct: 132 DMAYAASRYTEVKLDPIANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIG 191

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA+SI   N+ E+CE  +A++ NPE     LLE +  PDFP GG IV   +++   
Sbjct: 192 IAVGMASSICPFNLAEVCETTIAVLKNPE---HDLLETLHAPDFPGGGYIVYDEQALRRI 248

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRGG RVRAR+  +   R + CI VTEIP       +++K+ +L+ A +I  + D+R
Sbjct: 249 YDTGRGGIRVRARYTYD---RANNCIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMR 305

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   + F   R +DPD LM+ +F L+ +E  F  N NVL +G +P+V  +  +++
Sbjct: 306 DETDLNGLKLTFDLKRGVDPDRLMQRLFKLTPLEDSFSCNFNVL-IGGMPRVCGVRTLIE 364

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVS 419
           EW A R E + RR   ++     ++ +L+GL    L+ID+ + I+R   + +   P ++ 
Sbjct: 365 EWAAFRSECVRRRVFRQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQEEREVVPNLMI 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F + E Q + +  +RLR L +    +   E+  L  +  +++S+L   ++    I  E+
Sbjct: 425 GFGIDEVQAEYVAEIRLRQLNREHILKRTEEIGQLRDDIAEMESILEHREKIRAIIISEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             V + ++K     RR   +      D+A  + A      + +  +  G+ + +   S+ 
Sbjct: 485 ENVGKKYAKP----RRSLLYYPTEGEDEAGEEPA--PDYAVHLFFTREGYFKKITPQSLR 538

Query: 540 LSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDL 596
           +S  H  KEGD++  A+ A     +L  +  G+ Y   A +    +    G+ I   + +
Sbjct: 539 MSGEHKLKEGDTVTQAVEATNNSDLLFFTDRGQVYKAKASDFDDTKASVMGDYIPARLGM 598

Query: 597 NHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +  +  V  A   D    +L V   G A  V+ +     T + K     S+   +  + +
Sbjct: 599 DEGESAVYMAVTADYAGYMLFVFQNGKAAKVDLAGYATKTNRKKLVGAYSTASPLAGIFQ 658

Query: 656 VTGD 659
           +  D
Sbjct: 659 LAQD 662


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 213/290 (73%), Gaps = 1/290 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 182 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 290


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 208/702 (29%), Positives = 386/702 (54%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E +++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL +  G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
               DS     + L V+  G    + +   I N +     K    +K+  +E + + +  
Sbjct: 597 VIAIDSFTEQKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKEDELLNVYLID 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
             + + +   N   L + I +IPE  +R  GV+  + K G +
Sbjct: 653 GTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDV 694


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 150/311 (48%), Positives = 221/311 (71%), Gaps = 1/311 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KP HRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DS+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I+
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVL 346
           +T F +N+  L
Sbjct: 300 QTSFGINLLAL 310


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 213/290 (73%), Gaps = 1/290 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 3   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 63  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 123 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 182

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 183 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 241

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++
Sbjct: 242 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 291


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 375/709 (52%), Gaps = 66/709 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++ +   L
Sbjct: 75  YHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARLAKLTQDAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP HN+ E+ +A  
Sbjct: 135 SDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATSIPPHNLGEVVDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N EIS ++L+ Y+ GPDFPTGGI+V +++ + + Y  G G  ++R +   E++  G
Sbjct: 195 AYMKNDEISTKQLMRYMKGPDFPTGGIVV-NKDDLPDIYESGAGKIKIRGKVETEDMKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +VVTEIPY +  +   + +  +  L+ +K+   + DI ++S+ E +RIV+  K +  
Sbjct: 254 KKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSKEGIRIVIELK-KGA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR-SSFR 379
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + E+  R+  +  
Sbjct: 313 DAENLTNMLYKKTRLEDTFGVNMLAVADGR-PETMGLKQIIEHHVDFQFELATRKYKNLL 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MV 418
            + +D++ EI +GL+ A   ID II I+R     K                       M 
Sbjct: 372 AKELDKK-EIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTENIKFKTSISKKMA 430

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +    TE Q  AIL +RL  L  LE   ++ E +  L      + +LN+       I  +
Sbjct: 431 AMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASYEDILNNYDSMSEVIMED 490

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +  +K+ + +S     RRT    V  A+ A  ++  IE++ +  ++   G+ +++     
Sbjct: 491 LDRIKKEYGRS-----RRTA---VENAEAAVFEENKIEEQEVVFLMDRFGYAKTVD---- 538

Query: 539 DLSALHFKEGDSL----KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
             +A++ +  ++     +  L    T +I L +  GK + +   +L  G  R  G+ I  
Sbjct: 539 --TAVYERNKEAADAENRYVLSCMNTGKICLFTNTGKMHQIKVLDLPYGKFRDKGQPIDN 596

Query: 593 LIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + + +  Q+ +  ++ D+      +LL V+  G    V+ SE     R   T      +E
Sbjct: 597 VSNYDSTQETIV-YLCDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKR---TIAATKLQE 652

Query: 649 KMKLV-VKVTGDHVAVVGENRK--LLIFSIDQIPEMSRG----KGVRLQ 690
           + +L+ V+V  D   +V +      L F   ++ E  +G    +G+RL 
Sbjct: 653 EDELISVQVINDSQNIVLQTADGYFLRFPAGEVSEKKKGAIGVRGIRLH 701


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/310 (48%), Positives = 223/310 (71%), Gaps = 2/310 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           VV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEK
Sbjct: 181 FPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK 239

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           IA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  
Sbjct: 240 IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLA 299

Query: 346 LSMGRVPQVM 355
           L  G+ P+V+
Sbjct: 300 LVDGQ-PKVL 308


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 212/725 (29%), Positives = 388/725 (53%), Gaps = 43/725 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E + + SL   + +R+  Y+   I++RA+PD RDG KPV RRI+++M ++ L     F
Sbjct: 12  INEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDKPF 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD S+Y+++VR+AQ +    PLI   GN G+ID D AAA RYT
Sbjct: 72  KKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ L+L+G++++ V F   +++ + EP V P+  PNLL NG  GIA G AT +P
Sbjct: 132 ESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEMP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +AA+A I    + +E L++YI GPDFPTGG+I      IV++++ GRG   +
Sbjct: 192 PHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVI-HGLSGIVQAFKEGRGRISL 250

Query: 253 RARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
             ++  E +       I++T+IPY   KS+++  I E+I+ ++I  ++++ D+S  D   
Sbjct: 251 TCKY--EHINLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGIS 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  + + +M+ +F  ++++  +  N N+      P ++ L+ +L  ++ H + +
Sbjct: 309 IAIKLEKKANHESIMKYLFSKTELQVFYNYN-NIAIKNGSPTLLNLNELLDIYIEHLKTI 367

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---MVSRFSLTENQ 427
             +   F +     R+E+++G L      D+IIA IR + D  K V   ++  F+ ++ Q
Sbjct: 368 NVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDLIRIFAFSQRQ 427

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L + + Y  ++E + L+ +    + +LNS  +    +   ++++K+ + 
Sbjct: 428 ATAIAELRLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKKTYP 487

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                  R+T   +        +++ +++ E   V +S  G+++ + S +    D ++  
Sbjct: 488 TP-----RKTQIIDEELKRNYDIEELVVD-EKCYVSLSQDGYLKRVSSKTFKTNDFASFG 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KE D+L     A T D++L+ S  G    +P   +     +  G  I   +  N  + I
Sbjct: 542 LKENDNLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKI 601

Query: 603 VTAFV---YDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   V   +     + +V+ KG       N F++        TR+ K    ++ ++  +L
Sbjct: 602 IYVLVVNEFSQDYYISLVTQKGLGKRVSLNKFLI--------TRQSKISNAITLKDDDRL 653

Query: 653 V-VKVT-GDHVAVVGEN-RKLLIFSIDQIPEMS-RGKGVRLQSYKDG-GISDVICFKICE 707
           V V+V+ G    ++  N   ++ FS D +P +S +G+G ++    +G  +S +   K  +
Sbjct: 654 VDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEKVSAMSITKTTD 713

Query: 708 GLTWI 712
            L  I
Sbjct: 714 NLILI 718


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 207/702 (29%), Positives = 386/702 (54%), Gaps = 30/702 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E +++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKELAEQISILEKILGDEAELVAVLKSELADIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D ++L +  G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
               DS     + L V+  G    + +   I N +     K    +K+  +E + + +  
Sbjct: 597 VIAIDSFTEQKRFLFVTKNG----MTKQSTITNYKPQRYSKSMMAIKLKEDELLNVYLID 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
             + + +   N   L + I +IPE  +R  GV+  + K G +
Sbjct: 653 GTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDV 694


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 200/652 (30%), Positives = 358/652 (54%), Gaps = 33/652 (5%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 61  EARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIP 120

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG II + R+ I ++Y  G+G   V
Sbjct: 121 PHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVV 179

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +
Sbjct: 180 RSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRI 239

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + +L++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRREV+
Sbjct: 240 AIELKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVI 298

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +
Sbjct: 299 LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAE 358

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+  
Sbjct: 359 AIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 418

Query: 490 TDLGRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-- 544
                R ++  + ++A   D A+L    I +E   V ++  G+I+     S   S L   
Sbjct: 419 -----RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEI 469

Query: 545 -FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQ 600
             ++ D L     A TT  +L+ ++ G     P   L   R    GE + Q + +   N+
Sbjct: 470 GKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNE 529

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLV 653
           +I+   V   +D       V+  G    VE  E     T + K+  + K+  + +++  V
Sbjct: 530 EILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAV 589

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702
             +  D V +V +N   L F+I+++P + ++  GV+  + K+  +  S  IC
Sbjct: 590 APIKLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 641


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  317 bits (811), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 154/341 (45%), Positives = 232/341 (68%), Gaps = 8/341 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GRG  ++R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A WC E    GS  IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           V+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRP 343


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  317 bits (811), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 314/572 (54%), Gaps = 15/572 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  F   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+  +L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A   L+D+PE  +  L+ Y+ GPDFPTGGII +  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINGALTYLLDHPEAPLSALMRYVKGPDFPTGGII-QGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTVISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             N+ ++   ++  +F  +D++  +  NM  +   R P  + L   L+ +L  R+EV+ +
Sbjct: 302 ELNKDVNAAGILTYLFKKTDLQIYYNFNMVAIHDQR-PVHVSLKQGLEAFLNFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR   N       ++  +  T+ Q +AI
Sbjct: 361 RSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIDSYQFTQPQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L A+  +++ ++N      + I  EI E+   +     
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINESSALNDVIRDEIAEITTTYRSP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548
             RR     EV   +   +  A+ I +E + V++S  G+ +  SL+S+    S     E 
Sbjct: 479 --RRSEIEAEV---ENLIIDSAITIAEEDVQVLVSRNGYYKRASLRSYKASDSDNGLAED 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           D        +TT  + + +  G     P   L
Sbjct: 534 DLAIFEGQLNTTQHLFMFTNKGNIIYRPVHEL 565


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  316 bits (810), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 219/705 (31%), Positives = 377/705 (53%), Gaps = 32/705 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   + E +  YA   I++RA+PD+RDG KPV RRI+HAM+E+ +     +KKSAR VG
Sbjct: 12  SLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKPYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+Y+++VR++Q +    PL+  QGN G+IDGDS AA RYTE R+++  
Sbjct: 72  EVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRYTECRLSKFG 131

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + IL+ +D++ V F + +++ + EP V PS  PN+L NG +GIA G AT+IP  N  E+ 
Sbjct: 132 QTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNIPPFNPSEVI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +  I  PE S+ +L + I GPDFPTGGII + +E I E Y+ G+G F +RA+   EE
Sbjct: 192 DGTIYRILRPESSLAELAKIIKGPDFPTGGII-QGKEFIQEIYKTGKGKFFIRAK-IEEE 249

Query: 261 VGRGSWCI---VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
             + +  +   +V EIPY   KS +++ + E+     +P  +++RD+S ++   ++   +
Sbjct: 250 PTKSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGISIVLEFD 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              D +++   ++  + ++  +  NM VL   R P    L  IL  ++ H   V+ + + 
Sbjct: 310 TEKDLEIIKTFLYKKTQLQISYNANM-VLIKDRKPVQAGLLEILDSFIEHANNVVIKAAQ 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R EI++GL+ A   ID ++ +I+   ++++ K  +   F + E Q +AI+NL
Sbjct: 369 YDLEKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAKLKIQDYFKVNERQSEAIVNL 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L   +  ++K E + LL   ++ + ++NS   +   I   +   K+ F      G 
Sbjct: 429 RLYVLTSFDTEKLKKEYEELLEFIKEKELIINSVPYRNKFIVSILENHKKSF------GY 482

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
           +R +  E    +       ++E+   T +++   +I+ +   S+   DLS    K+ D  
Sbjct: 483 KRRSLIENEVEELEIETVDIVEERNGTCIVTRDNYIKFIDDVSIEELDLSKAKIKDADIP 542

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVTAF--- 606
                  T D ++ L+  GK  T+PA    +   + +G  I  LI ++  +  + AF   
Sbjct: 543 VDIFRLSTLDHLVCLTNRGKMITIPAYKIKMTKLKDNGVHINELITIDSFEKTILAFGVS 602

Query: 607 VYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTF--LKVSSEEKMK-LVVKVTGDHV 661
            Y      ++V++K +    I  E   ++   K  T+  LK  +++ +   ++K     V
Sbjct: 603 KYSDINTEILVATKNSLIKRISLEDINLSKNAKSSTYVSLKGGNDDVVSAYILKKEYSEV 662

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
             V +N     + ID+IP + R   GV+  S KD    D++ F +
Sbjct: 663 VSVTQNGYATRYKIDEIPLVGRTAAGVKNMSLKD---KDLMAFTV 704


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/647 (32%), Positives = 344/647 (53%), Gaps = 52/647 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I +RA+PD+RDG KPV RR+++AM E+GL      +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV + Q F +  PL+ G GNFG+I+GD AAA RYTEA++ +  + + L
Sbjct: 74  YHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEAKLQKFTQDVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF+  ++E + EPVV P + PNLL NG  GIAVGM TSIP HN+ E+ +   
Sbjct: 134 ADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSIPPHNLSEVVDGVK 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +DNPEI+ E+L+EY+ GPDFPTGGI+V  +E +   Y  G G  ++R +   E+  + 
Sbjct: 194 AYMDNPEITTEELMEYVKGPDFPTGGIVVNQKE-LKNIYETGSGKMKLRGKVHFEKAKKR 252

Query: 265 SW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           S    +V+TEIPY +     S+ I  +  LI  K    + D+ +ES+ E +RIVL  + R
Sbjct: 253 SERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESSKEGIRIVLELR-R 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           + D + L   ++  + +E  F +NM  ++ G+ P+++ L  I+        EVL R+   
Sbjct: 312 NADAERLENLLYKKTRLEDTFGVNMLAIANGK-PELLSLKDIISHHTKFHYEVLTRKYET 370

Query: 379 RMQAIDRRVEILKGLLIA-----------------------YLNIDEIIAIIRNEDKPKP 415
            ++    + EI +GL+ A                        +N D      + +   K 
Sbjct: 371 LLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLINGDTENITFKTQKSKKE 430

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              S+   TE Q  AIL +RL  L  LE   ++ E   +L + +K   +L         +
Sbjct: 431 --ASKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDKYQDILEHPASMKRVM 488

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             ++ ++K+ +      G  R T  E++ A  A ++   IE++ +  V+   G+ + L  
Sbjct: 489 KKDLEKIKKNY------GFDRKT--ELTNAKAAVVKALPIEEKEVVFVMDRFGYSKILDK 540

Query: 536 HSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
           ++ + +     KE    +  +H   TD+I + +  G  + +   ++ SG  R  G  +  
Sbjct: 541 NTYERNEETVLKE---YRHIVHCMNTDKICVFTDTGVMHQIKVQDIPSGRLRDKGTPLDN 597

Query: 593 LIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR 636
           + + +   + +   V D T K   LL V++     +V+ +E I   +
Sbjct: 598 IGNYDSRNEQILLIVPDRTLKEASLLFVTASSMIKLVDGAEFIVQKK 644


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 217/674 (32%), Positives = 361/674 (53%), Gaps = 41/674 (6%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   + ER+  Y+   I++RA+PD+RDG KPVHRRI++AMSE+GL     +KKSAR+VG
Sbjct: 16  SLDKIMAERFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTNDKPYKKSARVVG 75

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD SVYD++V ++Q +    PL+   GN G++D D AAA RYTE RM +V 
Sbjct: 76  DVIGKYHPHGDTSVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDPAAAMRYTEVRMAKVC 135

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ + ++ V F   +++ + EP V P+ FPNLL NGT+GIA+GMAT +P HN+ E+ 
Sbjct: 136 NYMLEDLKKNTVAFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAIGMATEMPPHNLNEVL 195

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA +A +  P I+++ L+E+I GPDFPTGGII  ++  + E++  G+        +C  E
Sbjct: 196 EATIAKLRRPSITLDGLMEHIKGPDFPTGGIIYGNK-GVFEAFESGKLEKEKIKLFCKYE 254

Query: 261 VGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
           V +      I +TEIP+ V KS+L+  I  LI  + I  L +I+D+S  E ++IV+    
Sbjct: 255 VVKKDKLQFIEITEIPFGVVKSQLVYDIDVLINTETIDGLLEIKDQSDREGIKIVI---- 310

Query: 318 RSLDPDLLMESI--FML--SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            +L  +  +ESI  F+L  + M+  +  N NV+     P++M L+ +L+ ++ H + +  
Sbjct: 311 -TLSEEANVESIISFLLQKTSMQVNYSYN-NVVIHNNSPKLMGLNELLEAYIEHIKIIKT 368

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVD 429
           R  ++ ++    R+EI+ G +      D++I +IR  +  K  ++      F+ T NQ  
Sbjct: 369 RTLTYDLEKYLLRLEIVLGFIKVSEIPDKVIKVIRATEGGKAAVIENLMNAFNFTTNQAT 428

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI  LRL  L K ++     E  +L  +      LL+  K+  N +   ++++     K 
Sbjct: 429 AIAELRLYRLSKTDKEAFLIEQADLEKKIANTKELLDDEKKFVNYLILLLKQM----IKD 484

Query: 490 TDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
               RR   F E      DK  L    +++E + +  S  G+I+ L    V   D S   
Sbjct: 485 MPTPRRTQIFEEEFTFNHDKKDL----VKEEIVNIAFSKLGYIKRLSQKVVDSNDFSTFA 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            KE D L     A+T    L+ +  G    +P   +   +    G  +   +DL   ++I
Sbjct: 541 LKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAFVDLAPGENI 600

Query: 603 VTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +     +  ++   +V+++K   F   + +    +R  KT+  ++ + K +++      +
Sbjct: 601 INVIEVEDWNSPDFIVMATKLGFFKRTKIKDFEVSRTNKTYTAINIDNKDEVI------N 654

Query: 661 VAVVGENRKLLIFS 674
           VAV    + +LI +
Sbjct: 655 VAVSDGTKDILIIT 668


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 351/621 (56%), Gaps = 28/621 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G      ++KSA+ 
Sbjct: 6   VMSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPYRKSAKT 65

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           +G VIG  HPHGD SVYD++VRL+Q +  R PLI  QGN G+ID D AAA RYTEAR++ 
Sbjct: 66  IGNVIGNYHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYTEARLSP 125

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP HN++E
Sbjct: 126 IAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEE 185

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-C 257
           + +A +  I +   S+EK++E+I GPDFPTG  IVE +E I+ +++ G+G   VR++   
Sbjct: 186 VIDATIYRIKHSNCSLEKIMEFIKGPDFPTGA-IVEGKEGILNAFKHGKGKVIVRSKTEI 244

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
           +EE  +    IV++EIPY+V K+ L+ KI E+   + +  + ++RDES  + +RIV+  K
Sbjct: 245 IEE--KNMNKIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRIVIDLK 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            + +     +  ++  +D++  +  NM  +   R P +M +  IL  ++ H+ +V+ R S
Sbjct: 303 -KDISVQNTLNYLYKNTDLQKNYNYNMVAIKDKR-PVLMGILDILDGYIDHQIDVVTRSS 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILN 433
            + +     R  I++GL+ A   +D+++  IR ++DK   K  +++++  +E Q +AI+ 
Sbjct: 361 IYDLNKAKDRKHIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAKYEFSEKQAEAIVM 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQWNQIACEIREVKEIFSKST 490
           L+   L +L    IK+  +      EKI   +++L+S +     I  +++ +K+ +    
Sbjct: 421 LQ---LYRLTNTDIKTLENENEELNEKIKYLNTILDSDEVLRKVIIDQLKNIKKKYPMPR 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
            L   R    EV   +K     AMI  E + + I+  G+I+ + + S+  S       KE
Sbjct: 478 -LSMIRDKIQEVKIDEK-----AMILSEDVNISITRDGYIKRISNRSIKASEKTPFGKKE 531

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D L     A+T D +LL S  G    +P   +     +  G+ +  L+ ++ ++ I+ +
Sbjct: 532 NDYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFKWKDPGKHVSYLVKMDSSEKIIAS 591

Query: 606 -FVYDSTCKLLVVSSKGNAFI 625
             V D    L V+ +  N  I
Sbjct: 592 ILVKDFNLPLYVMIATKNGQI 612


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 222/707 (31%), Positives = 379/707 (53%), Gaps = 62/707 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 18  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+L  +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+T+   E+ L
Sbjct: 78  YHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEVCL 137

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ +DF   ++E + EPVV P + PNLL NG  GIAVGMATSIP+HN+ E+ +   
Sbjct: 138 SDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATSIPTHNLCEVIDGVK 197

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N  ++  +L++YI GPDFPTGGI+V +++ ++  Y  G+G  ++R +  VE++  G
Sbjct: 198 AYMKNDGVTTRQLMKYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIKLRGKVEVEDLKGG 256

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+  K+   + DI ++S+ E +RIV+  K R  
Sbjct: 257 KKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGIRIVIELK-RGA 315

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +  + E+  R+ +  +
Sbjct: 316 DVENLKNMLYKKTRLEDTFGVNMLAVANGR-PETLGLKQIIEHHVDFQFELATRKYTTLL 374

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
           +    + E+ +GL+ A   ID II I+R     K                       M +
Sbjct: 375 EREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTENIRFKFSISKKMAA 434

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+    ++ +A  I
Sbjct: 435 MLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIARYEDILNN----YDSMAEVI 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  E+ S   + GR+R T  E   A++A  ++  +E++ +  ++   G+     + +VD
Sbjct: 491 ME--ELDSYKKEFGRKRRTVVE--NAEEAVFEEKKVEEQEVVFLMDRFGY-----AKTVD 541

Query: 540 LSAL--HFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
           ++    + +  DS  K  +H   T ++ + +  GK + +   +L  G  R  G  I  + 
Sbjct: 542 MAVYERNKEAADSENKYIVHCMNTGKLCIFTDTGKMHQVKVLDLPYGKFREKGTPIDNVS 601

Query: 595 DLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +   +++ +   + D+      KLL  +++G    V+  E     R   T +    +E  
Sbjct: 602 NYTSSEEEI-VMICDAEQMRFAKLLFATAQGMIKRVDGKEFQVAKR---TIVATKLQEDD 657

Query: 651 KLV-VKVTGDHVAVVGENRK--LLIFSIDQIPEMSRG----KGVRLQ 690
           +LV VKV  +   +V + R    L F    +PE  +     +G+RLQ
Sbjct: 658 RLVSVKVVNETQNLVLQTRNGYFLRFPAADVPEKKKAAVGVRGIRLQ 704


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 150/309 (48%), Positives = 217/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+ D  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSA A RYTEARM++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H V EI +  LA+ +NP+I I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 225/675 (33%), Positives = 359/675 (53%), Gaps = 68/675 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      +KSARIVG+ +GK
Sbjct: 14  MQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYTEA++ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYTEAKLARFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP+HN+ E+C+  +
Sbjct: 134 KDLDK-TVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPTHNLSEVCDTCI 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR- 263
           A I N +I  EKLLE + GPDFPTGGII   R+ +++ Y  G G  ++R +  V E+GR 
Sbjct: 193 AYIKNRDIDTEKLLEILHGPDFPTGGIIANKRD-LLDIYSTGNGKLKLRGKIEV-ELGRR 250

Query: 264 --GSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
                 ++++EIPY +  +   +L+  +A L+  K++  + DI ++S ++  RIVL  K 
Sbjct: 251 KSDKDKLIISEIPYTMIGTGINKLLVDVANLVETKKLSDVVDISNQSDKNGTRIVLELK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D + +   ++  + +E  F +NM  +  GR P+++ L  ILK ++  + ++  ++ +
Sbjct: 310 KDADIEKIKNILYKKTKLEDTFGVNMLAIVEGR-PEILSLRDILKNYIEFQYKITTKKYN 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS--------------- 419
             +     + EI +GL+ A   ID IIAI+R   N  + K  + S               
Sbjct: 369 ILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLTSGDTTGITFKVKSLEK 428

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE----KIDSLLNSGKQQW 472
              + S T+ Q  A+L++RL  L       I  E++ LL + E     I    N  K   
Sbjct: 429 DAKKLSFTDKQAQAVLDMRLYKL-------IGLEIEALLKDNEITLKNIAEYKNILKNHK 481

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           N     I+++++I     +    R T+ E   A +A  ++ ++  E +  V+   G+ + 
Sbjct: 482 NMDKLFIKDLEKI---KKEFAVPRKTYIE--DAKEAVYEEEVLPSEEVIFVMDRFGYCKI 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           L  ++ D +A + +  +  K       TDRI + S  G  Y L   +L         I  
Sbjct: 537 LDRNTFDKNAENIETEN--KYVFPVMNTDRICIFSNKGILYKLKVTDL--------QISK 586

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEE 648
           L D     D +T F   +   LL VS       ++ S I+  T+KG     +F +  +  
Sbjct: 587 LKDKGTPVDNLTKFDSSNENILLAVSEDN----IQGSYILMITKKGYVKKVSFEEFKTNN 642

Query: 649 KMKLVVKVTGDHVAV 663
           K  +  K+T D V V
Sbjct: 643 KQVVSTKLTNDDVLV 657


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 337/573 (58%), Gaps = 14/573 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  + 
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E++     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            D        ++ D +LL ++ G     P   L
Sbjct: 537 ADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHEL 569


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 204/584 (34%), Positives = 330/584 (56%), Gaps = 39/584 (6%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   + E++  Y+   I++RA+PD+RDG KPVHRRI++AMSE+GL     +KKSAR+VG
Sbjct: 16  SLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTSDKPYKKSARVVG 75

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD SVYD++V ++Q +     L+   GN G++D D AAA RYTE RM+++ 
Sbjct: 76  DVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDPAAAMRYTEVRMSKIC 135

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  + ++ V F   +++ + EP V PS FPNLL NGT+GIA+GMAT +P HN+ E+ 
Sbjct: 136 NYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAIGMATEMPPHNLNEVL 195

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY---RLGRGGFRVRARWC 257
           EA +A +  P I+++ L+E+I GPDFPTGGII  ++  I E++   +L +   ++ + + 
Sbjct: 196 EATIAKLKRPTITLDGLMEHIKGPDFPTGGIIYGNK-GIFEAFYNGKLDKEKIKLFSNYT 254

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPK 316
           V++  +    I +TEIP+ V KS+L+  I  LI  + I  L +I+D+S  E +RIV+   
Sbjct: 255 VKQTDKNK-LIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIKDQSDREGIRIVI--- 310

Query: 317 NRSLDPDLLMESI--FML--SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
             +L  D   ESI  F+L  + M+  +  N NV+     P++M L+ +L  ++AH ++V 
Sbjct: 311 --TLSKDANEESIISFLLQKTSMQVNYSYN-NVVISNNSPKLMNLNELLDAYIAHIKDVK 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQV 428
            +  ++       R+EI+ G L      D +I +IRN +  K  ++      F  ++NQ 
Sbjct: 368 TKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSEGSKSGVIKALKESFGFSQNQA 427

Query: 429 DAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE-VKE 484
            AI  LRL  L K ++      K+EL+  +A    I  LL+  K+    +   +R  +KE
Sbjct: 428 TAIAELRLYRLSKTDKQAFLIEKAELEKNIAN---IKELLSDEKKFVGYLIELLRGIIKE 484

Query: 485 IFS-KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-- 541
           I + + T +     +F      DK  L    +++E + +  S  G+I+ L    +D +  
Sbjct: 485 IPTPRKTQIVAEEFSFNH----DKKDL----VKEEIVNISFSKNGYIKRLSQKIIDSNSP 536

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            +   KE D+L     ++T   IL+ +  G    +P   +L  +
Sbjct: 537 ESYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIPVYKILESK 580


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/292 (51%), Positives = 214/292 (73%), Gaps = 2/292 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDES 297


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 202/564 (35%), Positives = 331/564 (58%), Gaps = 25/564 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KSAR+VG+V+GK
Sbjct: 30  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKSARVVGDVMGK 89

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEARM++ A L++ 
Sbjct: 90  YHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGPAAARYTEARMSREAMLLVG 148

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN+ E+  AA  
Sbjct: 149 ELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVTAARW 208

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGR 263
           LI++P+ +++KL+E++ GPD PTGG+++   E +  +Y  GRG  R+RA+  +   E  R
Sbjct: 209 LINHPDATLDKLMEFVPGPDLPTGGLLLGLDE-VRRAYETGRGVVRMRAKVEIGPIEGSR 267

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSL 320
           G   I V E+PY +   ++I  +  E+   KR+  + D++D  +     R+V+  K   +
Sbjct: 268 GRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTRLVIECKV-GV 326

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV+ RRS++R 
Sbjct: 327 NPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLAHRYEVVTRRSAYRR 385

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLR 437
           +  + R+ ++ GLL+A L+ID+++ +IR  +  +     ++ RF L+E Q   IL+  LR
Sbjct: 386 RRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRRFGLSEVQATYILDTPLR 445

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L + +  ++++E + L +E  ++  LL+  K     ++ E+  V +  +       RRT
Sbjct: 446 RLTRYDRLELEAEQEKLRSEIAELSRLLDDRKVLRKVVSNELAAVVKQSAAP-----RRT 500

Query: 498 TFC--EVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLSALHFKEG----D 549
           T    ++     A++    +E   +P  V++S+ G +    + S + +    + G    D
Sbjct: 501 TLVDGDLKEVLAASVPSGPLEVADDPCQVILSSTGLVARTAAESEEAAEGSRRHGRVRHD 560

Query: 550 SLKIALHAHTTDRILLLSTDGKAY 573
           +++   H+    R+LL+++ G+A+
Sbjct: 561 AVRAVAHSTARGRVLLVTSGGRAF 584


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 366/684 (53%), Gaps = 72/684 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K A+I 
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+  G  HPHG+  +Y +LVR+AQ +  RY L+  QGNFG+I G   AA RYTEARM+  
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+++L+ +  D VD+  TY+E ++EP V PSK+PNLL NG+ GIAVGMATSIP HN+ E+
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A + +I+ P + IE+LL+ I GPDFPTGGII   R  +   Y  GR    VR+   ++
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIIC-GRSGVRRGYLTGRSTILVRSHTTID 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKN 317
            V +G   IV+ +IPYQ  + R+ E+IA      RI  +  +R+ES   E VR+VL  K 
Sbjct: 240 NV-KGRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELK- 297

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  DPD+++  +F  + ++  F + M  L  G+ P+ + +  ++ E++ HR  V+ RR+ 
Sbjct: 298 RDADPDIVLNQLFQFTPIQDTFSIIMLALVDGK-PRTLTIRDLIDEFIRHRVIVIRRRTQ 356

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEII-----AIIRNEDKPK------PV-MVSR----- 420
           F +    +R   ++GLL+A  +IDEII     +  + E K +      P  M++R     
Sbjct: 357 FLLSRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEE 416

Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++LT  Q DAIL + L  L  LE+ ++  E   LLAE  +   +L+
Sbjct: 417 GFELFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILS 476

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVIS 525
             +     I  ++ E++  F       +RRT   E+S  +   +  + +IE+E + V IS
Sbjct: 477 DERNIREIIRDQMLEIEAKFGD-----KRRT---EISLEELGYIDLEDLIEEETMVVSIS 528

Query: 526 NRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+   + +          +     ++ D ++    A T   +L  +T GK Y    
Sbjct: 529 HSGYIKRTPATTYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKV 588

Query: 578 GNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            +L  LS    G AI  L+ L   + I       + C+ +        F VE+  ++  T
Sbjct: 589 YDLPQLSRESRGRAIVNLLQLEEGERI-------ADCRAV------RDFDVEDHYLVMAT 635

Query: 636 RKG---KTFLKVSSEEKMKLVVKV 656
           RKG   KT L+  S    K ++ +
Sbjct: 636 RKGLVKKTKLEAYSRPMKKGIIAI 659


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 332/595 (55%), Gaps = 43/595 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L+ +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + N +IS++ L+ Y+ GPDFPTGG++V +++ ++  Y  G G  RV
Sbjct: 185 PHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGGLVV-NKDDLLRIYETGTGKLRV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           R +    ++  G   +V+TEIPY +      + +  IA L+  K+   + DI ++S+ E 
Sbjct: 244 RGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSKEG 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  K R  D + L   ++  + +E  F +NM  ++ GR P+ + L  +++  +   
Sbjct: 304 IRIVLDLK-RDADVENLTNMLYKKTKLEDTFGVNMLAVADGR-PETLSLKQVIEHHVDFV 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV------- 418
            +V  R+ +  +     + EI +GL+ A   ID II I+R   N ++ K  +V       
Sbjct: 362 FDVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKKCLVDGVTEGI 421

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +   +E Q  AIL++RL  L  LE   ++++    +      + +LN+
Sbjct: 422 RFKGKSSEKAAQKLHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIAIYEDILNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+ ++K+      + G +R T  E   A++   ++  +E+  +T ++   
Sbjct: 482 YDSMAEVIMKELDQIKK------EYGTKRRTVIE--NAEEVVYEEKKMEEMEVTFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           G++R++   + + +    KE  +   K   +   TD+I + + +GK +++   ++
Sbjct: 534 GYMRTIDKSAYERN----KEAANAENKYVFNCMNTDKICIFTDNGKMHSIKVADI 584


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 229/751 (30%), Positives = 391/751 (52%), Gaps = 61/751 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE+R+ ++  E  L
Sbjct: 75  YHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYTESRLAKITQEAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 135 ADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHNLGEVIDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  ++R +  VE    G
Sbjct: 195 AYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKIKLRGKVEVENGKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V++EIPY +  +   + +  +  L+ AK+   + DI ++S+ E +RIVL  K +  
Sbjct: 254 KKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEGIRIVLELK-KDA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + E++ R+    +
Sbjct: 313 DIENLKNMLYKKTRLEDTFGVNMLAVADGR-PETMGLRQIIEHHVDFQFELMTRKYKTLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                + EI +GL+ A   ID II I+R     K                         +
Sbjct: 372 AKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVENITFKTAASKKKAA 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN+     N I  E+
Sbjct: 432 KLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILNNYDSMTNVIIDEL 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ +++      RRT    +    +A  ++  +E++ + +++   G+ +++   + +
Sbjct: 492 EGYKKAYARE-----RRTV---IENGKEAIYEENKVEEQDVILLLDRFGYAKTVDVATYE 543

Query: 540 LSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDL 596
            +    +  DS  K  +    T ++ + +  GK + +   ++  G+   +++ +  L + 
Sbjct: 544 RNK---EAADSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFRDKSVPIDNLGNY 600

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  Q+ +     +      KLL V+ +     V   E + + R      K+  E+++  V
Sbjct: 601 DSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTTAA-TKLQEEDEVVAV 659

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEG 708
           +KV  + ++ +  E    L F + ++PE  +G    +G++LQ  K   I  +  F     
Sbjct: 660 IKVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQ--KSDRIEQIYLFA---- 713

Query: 709 LTWIDSAGRSYNRSENDLLGW-LGKRGGVGS 738
              +D+ G SY   E  L    L KR G G+
Sbjct: 714 -DGVDTKG-SYQEKEVSLNRLKLNKRDGKGT 742


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 226/704 (32%), Positives = 377/704 (53%), Gaps = 62/704 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     +KSARIVG+ +GK
Sbjct: 14  MQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +A +
Sbjct: 134 KDLDK-TVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVIDAVM 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A IDNP+IS  +L+EY+ GPDFPTGGII  ++  + E Y  G G  ++R +  +E   R 
Sbjct: 193 AYIDNPDISTRELMEYMPGPDFPTGGIIA-NKSGLAEIYETGSGKIKLRGKIDIELGKRK 251

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318
           +    +V+TEIPY +  +   + +  +AEL+ +K++  + DI ++S +D +RIVL  K +
Sbjct: 252 ADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSNKDGIRIVLELK-K 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  + +E  + +NM  ++ GR P+ + L GILK +L  +     R+   
Sbjct: 311 DADVEKIRNILYKKTKLEDTYGVNMLAIAGGR-PETLNLKGILKNYLDFQYHNATRKYQA 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM----------VSRFS-- 422
            ++    + EI +GL+ A   ID IIA++R     +D    +M          VS F+  
Sbjct: 370 LLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLMTGDTSNIKFRVSGFAED 429

Query: 423 -----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                 TE Q  AIL +RL  L  LE   ++ E    +A+  +   +L S       I  
Sbjct: 430 AKNLHFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEYRHILESRSNMDVVIKK 489

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  +KE F+       RRT    +    +A   +  +    +  V+   G+ + L   +
Sbjct: 490 DLAAIKEEFATP-----RRTL---IEDGKEAVYDETAVAVSEVVFVMDRFGYCKLLDKST 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            D +     E +++ + +    TD+I + +  G  + + A ++  G  R  G  I  L  
Sbjct: 542 YDRNRETI-ETENVHV-VSCFNTDKICMFTNTGNLHQVKAADIPYGKLRDKGTPIDNLSK 599

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMK- 651
            +  ++ +   +Y  + +    S KG+ F+    + +     G+ F    +  +  K++ 
Sbjct: 600 YDGTKEEI---IYLCSAE----SMKGSRFLFATRQALVKRVPGEEFETNNRTVAATKLQD 652

Query: 652 ------LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR 688
                 ++V      V +   N   L F++++IPEM +  +GVR
Sbjct: 653 GDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMKKNSRGVR 696


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  314 bits (804), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 209/703 (29%), Positives = 386/703 (54%), Gaps = 31/703 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E +++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++K+ +    
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKELADQISVLEKILGDESELIAVLKSELADIKKKYKTP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKE 547
              RR     E+S     T  + ++  E + V ++  G+++  S +S++    A L  KE
Sbjct: 482 ---RRTEVQAEISEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
           A     +    + L V+  G    + +   I N +     K    +K+   +++  V  +
Sbjct: 597 AIAIQTFTEEKRFLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKDNDELLSVNLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
            G + + +   N   L + I +IPE  +R  GV+  + K   I
Sbjct: 653 DGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQDDI 695


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 340/599 (56%), Gaps = 43/599 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + + L  +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS++ L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVV-NKDDLHKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-ED 308
           R +  VE++  G   +V+TEIPY +  +   + +  +A LI  K+   + DI ++S+ E 
Sbjct: 244 RGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSKEG 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL  K +  D + L   ++  + +E  F +NM  ++ GR P+ + L  I++  +   
Sbjct: 304 IRIVLELK-KDTDVENLTNMLYKKTRLEDTFGVNMLAVADGR-PETLSLKQIIEYHVDFV 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV------- 418
            E+  R+    +     + E+ +GL+ A   ID II I+R   N ++ K  +V       
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                      ++   TE Q +AIL++RL  L  LE   +++E +  +        +L++
Sbjct: 422 KFKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIALYKDILDN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
               ++ +A  I  +K++ +   + GR+R T  E   A++A  ++  +E+  +  ++   
Sbjct: 482 ----YDSMAAVI--IKDMDAIKKEYGRKRRTAIE--NAEEAVYEEKKMEEMEVCFLMDRF 533

Query: 528 GWIRSLKSHSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           G+++ +  ++ + +  A+H    +  K   +   TD+I + +  GK +T+ A ++  GR
Sbjct: 534 GYMKLIDKNAYERNKEAVH----NENKYVFNCMNTDKICIFTDTGKMHTIKAVDIPLGR 588


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+P++RD  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMA +IP H + EI +  LA+ +NP+I+I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 216/698 (30%), Positives = 362/698 (51%), Gaps = 51/698 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 16  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 75

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 76  YHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 135

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP HN  E+ +  +
Sbjct: 136 ADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIPPHNFGEVIDGVI 195

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + +P+I+ E++++YI GPDFPTGG IV +++ ++  Y  G G  ++R +  VE+   G
Sbjct: 196 AYMKDPDINTEQMMQYIPGPDFPTGG-IVANKDELLAVYSTGMGKIKIRGKVEVEKGKGG 254

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  I  L+ AK+   + DI ++S+ E +RIVL  K +  
Sbjct: 255 KDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKEGIRIVLELK-KGA 313

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + E+  R+    +
Sbjct: 314 DVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQYELATRKYQTLL 372

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------VS 419
                + EI +GL+ A   ID II I+R     K                         +
Sbjct: 373 AKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNINFKSEQSKRDAA 432

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S       I  E+
Sbjct: 433 KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSRAAMAKVIIKEL 492

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ ++K      R+T    +   ++A +++  IE+  +  ++   G+ +++   + +
Sbjct: 493 ESFKKEYAKP-----RKTV---IDNLEEAVVEEKKIEEMDVVFLMDRFGYAKTVDVATYE 544

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            +    KE  +   +  L    TD+I + +  G+ + L   +L  G  R  G  I  L +
Sbjct: 545 RN----KEAANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDKGTPIDNLSN 600

Query: 596 LNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            N +++    +T     S  ++L  +      +V+ SE     R      K++  +++  
Sbjct: 601 YNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTTAA-TKLNEGDELIF 659

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688
           V  +  +   V+   +   +   I  IPE  +G  GVR
Sbjct: 660 VQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVR 697


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 204/694 (29%), Positives = 383/694 (55%), Gaps = 31/694 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E++++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +    
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIKKKYKTP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
              RR     E++     T  + ++  E + V ++  G+++     S   S    L  KE
Sbjct: 482 ---RRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGKELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ + +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
                 +    + L V+  G    + +  +I N +     K    +K+  ++++  V  +
Sbjct: 597 VIDIPAFTEEHRFLFVTKNG----MTKQSLITNYKPQRYSKSMMAIKLKDDDELLNVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
            G + + +  +N   L + I +IPE  +R  GV+
Sbjct: 653 DGTEDIFLATKNGYGLRYPITEIPESGARTAGVK 686


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 220/703 (31%), Positives = 370/703 (52%), Gaps = 58/703 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ Y++S I  RA+PD+RDG KPV RR ++ M E+ +D+   +KKSARIVG+ +GK
Sbjct: 14  MQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPYKKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV ++Q F +  PL+ G GNFG+I+GD AAA RYTEAR+ +VA E+ L
Sbjct: 74  YHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYTEARLAKVAQEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   Y+E + EP V P + PNLL NG+ GIAVGM TSIP HN+ E+ +  +
Sbjct: 134 GDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSIPQHNLGEVVDGVI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + NP+IS  ++++ I GPDFPTGG IV +++ ++E Y  G G  ++R +  +E++  G
Sbjct: 194 AYMKNPDISTPEMMQIIPGPDFPTGG-IVTNKDDLLEIYSTGLGKIKIRGKAEIEKLKGG 252

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSL 320
              IV+TEIPY +      + +  I  L+  K+   + DI ++S  E +RI++  + +  
Sbjct: 253 KEQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGEQMRIIVELR-KGA 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   ++  ++  + +E  F +NM  ++ G+ P+ + +  I++  +  + E+  R+ +  +
Sbjct: 312 DAQNVLNLLYKKTRLEDTFGVNMLAVADGK-PETLGIVPIIRHHVDFQYELCTRKYNHLL 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS------------------ 419
                + EI +GL+ A   ID II I+R      + K  +V                   
Sbjct: 371 GKEQEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGIKFKSQKSKADAE 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL++RL  L  LE   ++ +    L +  K   +L S  +    I  ++
Sbjct: 431 QLHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTKILGSRAEMAKVIIKDL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + +K+ +++      RRT    V        ++A++E++PI V+       R   +  VD
Sbjct: 491 QAIKKEYARE-----RRTVIDNV--------EEAVVEEKPIEVIDVAVLIDRFAYARVVD 537

Query: 540 LSAL----HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
           +          E +S KI      TD+I L +  G  +T+   +L  G  R  G+ I   
Sbjct: 538 MPTYERNKEAAETESKKIVF-CKNTDKICLFTEKGDMHTIKVLSLPFGKFRDKGQPIDTA 596

Query: 594 -----IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                IDL     I    + +   K L+  +K     + +      +RK     K++ ++
Sbjct: 597 EKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEFDVSRKTIAATKLNDKD 656

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVR 688
           ++ + VK+      VV ++ K +   I  D IPE  +   GVR
Sbjct: 657 EV-ICVKIINPGDTVVMQSAKDMFLRIEGDTIPEKKKTAAGVR 698


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 225/750 (30%), Positives = 388/750 (51%), Gaps = 59/750 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE+R+ ++  E+ L
Sbjct: 75  YHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYTESRLAKITQEVYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP+HN+ E+ +A  
Sbjct: 135 ADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHNLGEVIDAVK 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  ++R +  VE    G
Sbjct: 195 AYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKIKLRGKVEVENGKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V++EIPY +  +   + +  +  L+ AK+   + DI ++S+ E +RIVL  K +  
Sbjct: 254 KKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEGIRIVLELK-KDA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + E++ R+    +
Sbjct: 313 DIENLKNMLYKKTRLEDTFGVNMLAVADGR-PETMGLRQIIEHHVDFQFELMTRKYKTLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                + EI +GL+ A   ID II I+R     K                         +
Sbjct: 372 AKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVENITFKTAASKKKAA 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN+     N I  E+
Sbjct: 432 KLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILNNYDSMTNVIIDEL 491

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ +++      RRT    +    +A  ++  +E++ + +++   G+ +++   + +
Sbjct: 492 EGYKKAYARE-----RRTV---IENGKEAIYEENKVEEQDVILLLDRFGYAKTVDVATYE 543

Query: 540 LSALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDL 596
            +    +  DS  K  +    T ++ + +  GK + +   ++  G+   +++ +  L + 
Sbjct: 544 RNK---EAADSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFRDKSVPIDNLGNY 600

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  Q+ +     +      KLL V+ +     V   E + + R         ++E + ++
Sbjct: 601 DSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTTAATKLQEADEVVAII 660

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGL 709
             +   ++ +  E    L F + ++PE  +G    +G++LQ  K   I  +  F      
Sbjct: 661 KVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQ--KSDRIEQIYLFA----- 713

Query: 710 TWIDSAGRSYNRSENDLLGW-LGKRGGVGS 738
             +D+ G SY   E  L    L KR G G+
Sbjct: 714 DGVDTKG-SYQEKEVSLNRLKLNKRDGKGT 742


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 224/711 (31%), Positives = 370/711 (52%), Gaps = 71/711 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RAIPD RDG KPV RR+++ M E+ LD     +KSARIVG+ +GK
Sbjct: 14  MQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +A  
Sbjct: 134 KDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVIDAVQ 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A IDNPE++ ++L+E++ GPDFPTGG+I    E + + Y  G G  ++R ++ VE   R 
Sbjct: 193 AYIDNPEVTTQELMEFMPGPDFPTGGVIANKSE-LPQIYETGMGKIKLRGKFEVELGKRK 251

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +    ++++EIPY +  +   + +  +A+L+ +K++  + DI ++S  E +RIVL  + +
Sbjct: 252 ADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSNKEGIRIVLELR-K 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D D +   ++  + +E  F +NM  ++ GR P+ + L GIL+ +L  + E   R+ + 
Sbjct: 311 DADIDKIKNILYKKTKLEDTFGVNMLAIADGR-PETLNLKGILRNFLNFQYENTERKYNV 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS---------------- 419
            +Q    + E+ +GL+ A   ID IIAI+R   N    K  + +                
Sbjct: 370 LLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLTTGDVTNIHFKVPGFEED 429

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             + + TE Q  AIL +RL  L  LE   ++ E    L +  +   +L S  Q    I  
Sbjct: 430 AKKLAFTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEYKKILGSRAQMNRVIKE 489

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           ++  +K  F+       RRT    +    +A   ++ +  + +  V+   G+ + L    
Sbjct: 490 DLAAIKAEFATP-----RRTL---IEDGPEAVYDESAVAVQEMVFVMDRFGYCKLLDKST 541

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
                 +VD   +H          +    TD+I L +  G     KA  +PAG L   R 
Sbjct: 542 YDRNQETVDTEQVH---------VVKCLNTDKICLFAASGSLYQIKAMDVPAGKL---RD 589

Query: 586 HGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            G  I+ L   +  +D +       D   ++ V ++K        SE      +     K
Sbjct: 590 KGTPIENLSKFDGAKDTIVYLTSAEDMKGRIFVFATKMAMVKQVPSEEFETNNRVVAATK 649

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIP---EMSRG-KGVRL 689
           +   +++  V+ V G+   V+     + + F++++I    + SRG +G+RL
Sbjct: 650 LQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEISMLKKASRGVRGIRL 700


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 215/698 (30%), Positives = 362/698 (51%), Gaps = 51/698 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 20  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 79

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 80  YHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 139

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP HN  E+ +  +
Sbjct: 140 EDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIPPHNFGEVIDGVI 199

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + +P+I+ E++++YI GPDFPTGG IV +++ ++  Y  G G  ++R +  VE+   G
Sbjct: 200 AYMKDPDINTEQMMQYIPGPDFPTGG-IVANKDELLAVYSTGMGKIKIRGKVEVEKGKGG 258

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  I  L+  K+   + DI ++S+ E +RIVL  K +  
Sbjct: 259 KDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEGIRIVLELK-KGA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + E+  R+    +
Sbjct: 318 DVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQYELATRKYQTLL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------VS 419
                + EI +GL+ A   ID II I+R     K                         +
Sbjct: 377 AKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNINFKSEQSKRDAA 436

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S       I  E+
Sbjct: 437 KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSRAAMAKVIIKEL 496

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ ++K      R+T    +   ++A +++  IE+  +  ++   G+ +++   + +
Sbjct: 497 ESFKKEYAKP-----RKTV---IDNLEEAVVEEKKIEEMDVVFLMDRFGYAKTVDVATYE 548

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            +    KE  +   +  L    TD+I + +  G+ + L   +L  G  R  G  I  L +
Sbjct: 549 RN----KEAANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDKGTPIDNLSN 604

Query: 596 LNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            N +++    +T     S  ++L  +      +V+ SE     R      K++  +++  
Sbjct: 605 YNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTTAA-TKLNEGDELIF 663

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688
           V  +  +   V+   +   +   I  IPE  +G  GVR
Sbjct: 664 VQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVR 701


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/321 (47%), Positives = 219/321 (68%), Gaps = 6/321 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +M E+        +K
Sbjct: 7   DKVHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE++L  + GPDFPTG +I+  +  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMIL-GKMGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDES    
Sbjct: 246 IRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIF 330
             +     R ++P++++  + 
Sbjct: 306 MRISIELRRDVNPNIVLNQLL 326


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 295/525 (56%), Gaps = 33/525 (6%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE
Sbjct: 10  KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 69

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP 
Sbjct: 70  ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 129

Query: 194 HNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN+ E+ EA    +DN     E ++  ++E + GPDFPT G+IV + + I ++Y+ GRG 
Sbjct: 130 HNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGS 188

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V
Sbjct: 189 IRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV 248

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H
Sbjct: 249 GLRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDH 306

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           + +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + 
Sbjct: 307 QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDID 366

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ E
Sbjct: 367 EIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVE 426

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI--------TVVISNRGWIRSLKSH 536
              K  D  R R     +  AD     + +I +E +                  RS K  
Sbjct: 427 ---KHGDARRTR-----IVAADGDVSDEDLIAREDVXXXXXXXXXXXXXXXXLYRSQKRG 478

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
              +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 479 GKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 523


>gi|332755278|gb|EGJ85642.1| DNA gyrase, A subunit [Shigella flexneri K-671]
          Length = 784

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 315/575 (54%), Gaps = 65/575 (11%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 1   MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 60

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+
Sbjct: 61  TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 120

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT  II   R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K
Sbjct: 121 IPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 179

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +RLIEKIAEL+  KR+  +  +RDES +D +RIV+  K  ++  ++++ +++  + ++  
Sbjct: 180 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVS 238

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F +NM  L  G+ P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  
Sbjct: 239 FGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 297

Query: 399 NIDEIIAIIRNEDKP---KPVMVSR----------------------------------F 421
           NID II +IR+   P   K  +V+                                   +
Sbjct: 298 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 357

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  
Sbjct: 358 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 417

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SL 533
           V+E F      G +R T    + AD     + +I +E + V +S++G+++        + 
Sbjct: 418 VREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQ 469

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RG-HGEAIQ 591
           +      SA   KE D +   L A+T D IL  S+ G+ Y++    L    RG  G  I 
Sbjct: 470 RRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIV 529

Query: 592 LLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
            L+ L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 530 NLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 563


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 215/698 (30%), Positives = 361/698 (51%), Gaps = 51/698 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 20  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 79

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 80  YHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 139

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP HN  E+ +  +
Sbjct: 140 ADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIPPHNFGEVIDGVI 199

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + +P+I+ E++++YI GPDFPTGG IV +++ ++  Y  G G  ++R +  VE+   G
Sbjct: 200 AYMKDPDINTEQMMQYIPGPDFPTGG-IVANKDELLAVYSTGMGKIKIRGKVEVEKGKGG 258

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  I  L+  K+   + DI ++S+ E +RIVL  K +  
Sbjct: 259 KDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEGIRIVLELK-KGA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + E+  R+    +
Sbjct: 318 DVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQYELATRKYQTLL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------VS 419
                + EI +GL+ A   ID II I+R     K                         +
Sbjct: 377 AKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNINFKSEQSKRDAA 436

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S       I  E+
Sbjct: 437 KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNISKYEDILGSRAAMAKVIIKEL 496

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              K+ ++K      R+T    +   ++A +++  IE+  +  ++   G+ +++   + +
Sbjct: 497 ESFKKEYAKP-----RKTV---IDNLEEAVVEEKKIEEMDVVFLMDRFGYAKTVDVATYE 548

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            +    KE  +   +  L    TD+I + +  G+ + L   +L  G  R  G  I  L +
Sbjct: 549 RN----KEAANTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDKGTPIDNLSN 604

Query: 596 LNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            N +++    +T     S  ++L  +      +V+ SE     R      K++  +++  
Sbjct: 605 YNSSEENFVYITNLAAISRSQVLFGTKSAMLKVVDGSEFDVAKRTTAA-TKLNEGDELIF 663

Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688
           V  +  +   V+   +   +   I  IPE  +G  GVR
Sbjct: 664 VQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVR 701


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/258 (56%), Positives = 196/258 (75%), Gaps = 1/258 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA
Sbjct: 181 TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 239

Query: 288 ELIIAKRIPLLEDIRDES 305
           +L+  K+I  + D+RDES
Sbjct: 240 DLVRDKKIEGITDLRDES 257


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 318/595 (53%), Gaps = 61/595 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     +KSARIVG+ +GK
Sbjct: 14  MQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYTEAR+ + A E+ L
Sbjct: 74  YHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLEKFAQEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +A  
Sbjct: 134 KDLDK-TVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDAVR 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A ID+P+IS E+L+EY+ GPDFPTGGII    E  V  Y  G G  ++R ++ VE   R 
Sbjct: 193 AYIDDPDISTEQLMEYMPGPDFPTGGIIANKSELPV-IYETGAGKIKLRGKFEVELGKRK 251

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +    +V+TEIPY +  +   + +  IA+L+ +K++  + DI ++S  E +RIVL  + +
Sbjct: 252 ADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSNKEGIRIVLELR-K 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  +  E  F +NM  ++ GR P+ + L GIL+ +L  + E   R+ + 
Sbjct: 311 DADIEKIKNILYKKTKFEDTFGVNMLAIAGGR-PETLSLKGILRNFLDFQYENTERKYNV 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            +Q    + E+ +GL+ A   ID IIAI+R     K                        
Sbjct: 370 LLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLTNGDVSNIRFKVQGFEED 429

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +   TE Q  AIL +RL  L  LE   ++ E    L +      +L S  +    I  
Sbjct: 430 AKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIAGYKKILGSRGEMNRVIKD 489

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           ++  +KE FS       RRT    +    +A   ++ ++ + +  V+   G+ + L    
Sbjct: 490 DLAAIKEEFSVP-----RRTL---IEDGPEAVYDESAVQVQEVVFVLDRFGYCKLLDKST 541

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNL 580
                 +VD   +H          +    TD+I L +  G  Y +     PAG L
Sbjct: 542 YERNQETVDTEQVH---------VVRCLNTDKICLFAASGNLYQIKVMDVPAGKL 587


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/300 (51%), Positives = 211/300 (70%), Gaps = 2/300 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311
           RAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI
Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/648 (32%), Positives = 333/648 (51%), Gaps = 63/648 (9%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+ + A
Sbjct: 10  DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ 
Sbjct: 70  HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E 
Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEP 188

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  
Sbjct: 189 MRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDA 248

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++  ++  + ++T F  NM  L+ G+  Q+  LD +L+ +++ R EV+ RR+ F +
Sbjct: 249 NAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLL 307

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR---------------- 420
           +    R  +L GL IA  NIDE+I +IR    P+     +M  R                
Sbjct: 308 RKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDP 367

Query: 421 ---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  + 
Sbjct: 368 RHRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRI 427

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI- 530
              +  E+  V++ F        RRT   E+         + +I +E + V +S+ G+I 
Sbjct: 428 QTIVKDELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIK 479

Query: 531 -------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAG 578
                  R+ +      S +  ++ D +      +T   +L  S+ G     K + LP G
Sbjct: 480 RVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIG 539

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
              S    G+A+  ++ L   + I T               ++  +++G     + S+ +
Sbjct: 540 TPTS---RGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFV 596

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
              R GK  +K+  E    L V+   +H  V +     + + FS+D +
Sbjct: 597 QVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDV 644


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 324/588 (55%), Gaps = 25/588 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +M L  G    KSA IVG+ + 
Sbjct: 13  TLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLR-TKSANIVGQTM- 69

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNI-DGDSA-AAYRYTEARMTQVAE 141
           KL+PHGD ++Y+++VRL + +     P +  +GNFG +   D A AA RYTEA+++++  
Sbjct: 70  KLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDMAYAAARYTEAKLSEICT 129

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +   ++EDAVDF D Y+    EPV+ P++FPN+L N   GIAVGMA++  S N++E+C 
Sbjct: 130 EVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMASNFCSFNLKEVCN 189

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A + N +  +   LE+II PDFPTGG I+     + E    G+G F+VRA++     
Sbjct: 190 ATIAYLKNEDADV---LEHIIAPDFPTGGQIILDETEMREVLETGKGSFKVRAKY---HY 243

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +   CI + EIPY      +I+KI EL+ A +I  + D+RDE+      +     RS D
Sbjct: 244 IKKENCIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLSGLKLTIDLKRSTD 303

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P++LM+ +F  + +E  F  N N+L  G +P+V+    I+KEW   R++ + R+  F ++
Sbjct: 304 PEMLMQKLFKSTPLEDSFSCNFNLLING-MPKVLGFKEIIKEWCEFRQQCVVRKYRFAIE 362

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
            +++R  +L GL    L+ID+ I I+R+ +K K   P +++ F ++E Q D +  ++LR 
Sbjct: 363 KMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLMAHFEISEMQADYVAEIKLRH 422

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L K    +   ELD L  +  ++  ++ + K+    I+ E++ +++ F        R+T 
Sbjct: 423 LNKQYILETLKELDELEKKIAELKDIIENPKKVKKVISDELKVIQKKFG-----TERQTE 477

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHA 557
             + +   K    + +IE   + +  ++  +++ +   S+  S     KE D++   + A
Sbjct: 478 VIKHTEVVKVK-HEELIEDYNVKLFFTDHQYLKKITLVSLRSSGEQKLKEDDTIIQEIEA 536

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIV 603
                +LL +     Y L    +   +     + L  L+DL   + I+
Sbjct: 537 SNRSDLLLFTNKSNVYKLKLHEIEDTKASQFGVYLPNLLDLEEGEQIL 584


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 228/708 (32%), Positives = 364/708 (51%), Gaps = 70/708 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     +KSARIVG+ +GK
Sbjct: 11  MQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSARIVGDTMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 71  YHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 130

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +A  
Sbjct: 131 KDLDK-TVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDAVD 189

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A ID+P+IS EKL+E + GPDFPTGGII  ++  +   Y  G G  ++R +  VE   R 
Sbjct: 190 AYIDDPDISTEKLMELMPGPDFPTGGIIA-NKSDLPAIYETGSGKIKLRGKMEVELGKRK 248

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +    +V+TEIPY +  +   + +  +A+L+ +K++  + DI ++S  E +RIVL  + +
Sbjct: 249 ADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEGIRIVLELR-K 307

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  + +E  F +NM  ++ GR P+ + L GILK +L  + +   ++   
Sbjct: 308 DADIEKIRNILYKKTKLEDTFGVNMLAIAGGR-PETLSLRGILKNFLDFQYQNTEKKYRV 366

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            +Q    R E+ +GL+ A   ID IIA++R     K                        
Sbjct: 367 LLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLTTGDVSNIKFKTPGFEAD 426

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +   TE Q  AIL +RL  L  LE   ++ E    L +  + + +L S +   NQ+  
Sbjct: 427 AKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIARYEKILGS-RATMNQV-- 483

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-- 535
            I++  E   K   L R+     ++    +A   +  ++ + +  V+   G+ + L    
Sbjct: 484 -IKDDLEAIKKEFALPRK----TQIEDGPEAVYDETAVQVQEVVFVMDRFGYCKLLDKAT 538

Query: 536 -----HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585
                 +VD   +H          +    TD+ILL +  G     KA  +PAG L   R 
Sbjct: 539 YERNRETVDTEQVH---------VVRCLNTDKILLFTDTGNLHQLKAMDVPAGKL---RD 586

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  L   +  ++ +  ++ DS     K+LV +++        +E      +     
Sbjct: 587 KGTPIDNLSKFDGGKETI-VYLADSRELKGKVLVFATRTAMVKQVPAEEFETNNRTVAAT 645

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           K+   + +  V  V G   V +   N   L F +++I  M +  +GVR
Sbjct: 646 KLQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMKKNARGVR 693


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 230/721 (31%), Positives = 377/721 (52%), Gaps = 77/721 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD+RDG KPV RR+++ M+E+ +       KSARI G+ +GK
Sbjct: 14  MQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPTLKSARICGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++LV LAQ F +  PL+ GQGNFG+I+GDSAAA RYTEAR+ +  + ++ 
Sbjct: 74  YHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYTEARLQRFTDEVML 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              E  V F+  Y+E+  EP V P++ P  L NG+ GIAVGM TS PSHN+ EI +  LA
Sbjct: 134 RDLETTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSAPSHNLSEIIDLVLA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-VGRG 264
            + NP +   ++L Y+ GPDFPTGGII  +R  +++ YR G G  ++R +   E+  GR 
Sbjct: 194 YLKNPAMETREMLHYLPGPDFPTGGIIA-NRSELLDIYRTGSGKLKLRGKLVFEKRKGRS 252

Query: 265 SW-CIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319
               ++VTEIPY +      + ++  A L+  K++P + DI ++S +D +RIVL  K+ +
Sbjct: 253 DKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSDKDGIRIVLELKSGA 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D D +   ++  + +E  F +NM  +  GR P+V+ L GIL+E+L+ + +++ ++    
Sbjct: 313 -DIDRITNILYKKTKLEDSFGVNMLAIVKGR-PEVLSLRGILREYLSFQYQLIEQKYQKL 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM------------------ 417
           ++    R EI +GL+ A   ID IIA++R+    E+  K +M                  
Sbjct: 371 LEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALMGEGSEGIRLRERDREYRE 430

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +  F  TE Q  AIL+++L  L  LE   ++ E    L   ++   +L+S ++    +A
Sbjct: 431 QIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEYRGILSSRERANELLA 490

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E++E +        RRT   +      A   ++ +E+  +  V    G+++ L   
Sbjct: 491 QELSEIRERY-----FVPRRTLLED---GKDAVYDESAVEEMQVVYVQDRFGYVKLLD-- 540

Query: 537 SVDLSALHFKEGDSL----KIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHG 587
                 ++ +  ++L    +  +    TDRILL +  G+ + +     P G     R  G
Sbjct: 541 ----ETVYQRNQEALLSESRFLIPCKNTDRILLFTDQGRLHQIRLLDVPLGKF---RDKG 593

Query: 588 EAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLK 643
             I  +   + +++      A    S  +LL VS  G A  V   E   AN     T  K
Sbjct: 594 VPIDNISKYSASEEEILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDTANRLVSAT--K 651

Query: 644 VSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIP----------EMSRGKGVRLQ 690
           +   +++  V+ V G+    + +  E    L F I ++P           M  G+G R++
Sbjct: 652 LQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGRGDRIR 711

Query: 691 S 691
           S
Sbjct: 712 S 712


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 204/694 (29%), Positives = 382/694 (55%), Gaps = 31/694 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E++++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS   ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +    
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIKKKYKTP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
              RR     E++     T  + ++  E + V ++  G+++     S   S    L  KE
Sbjct: 482 ---RRTEVQAEITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGKELAMKE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVT 604
            D        ++ + +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +
Sbjct: 537 ADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 596

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKV 656
                 +    + L V+  G    + +  +I N +     K    +K+  ++++  V  +
Sbjct: 597 VIDIQTFTEEKRFLFVTKNG----MTKQSLITNYKPQRYSKSMMGIKLKDDDELLSVHLI 652

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
            G + + +  +N   L + I +IPE  +R  GV+
Sbjct: 653 DGTEDIFLATKNGYGLRYPIAEIPESGARTAGVK 686


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 345/603 (57%), Gaps = 30/603 (4%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 22  YAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 81

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 82  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 141

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           +F + +++ + EP + PS  PNLL NG++GIA G AT+IP  N++E+ +  +  ID+P  
Sbjct: 142 NFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPFNLKELIDVIIHRIDSPNC 201

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            +E +L+ + GPDFPTGGII++  + I  +Y  G+G   +RA+   E     +  +VVT+
Sbjct: 202 KLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIVIRAKIVNE-----NDQLVVTD 255

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLM---ES 328
           IP++  K+ +I  I E++ A ++P LE++RDES    +R+VL  +  + D  +L      
Sbjct: 256 IPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVL--QTNTKDEKVLATIKNY 313

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  +  N NV+   + P  M +   L  +L H   +L    SF ++   +R+E
Sbjct: 314 LYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHAYTILRNAISFDLKKDQKRLE 372

Query: 389 ILKGLLIAYLNIDEIIAII-RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+ A   ID+II II +++DK   +  +++++  +  Q +AI++LRL  L   +  
Sbjct: 373 VINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQAEAIVSLRLYRLTNTDIL 432

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +K E  +L    ++   LL       + +   +R  K++F+      +RR+T       
Sbjct: 433 ALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFN-----TKRRSTIG--GNI 485

Query: 506 DKATLQQA-MIEKEPITVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIALHAHTTD 561
           +K  + +A +IEK+ + +V S  G I+++   ++  ++ ++L  K+ D L   +   + +
Sbjct: 486 EKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLKIKQDDYLSDLIKVSSLN 545

Query: 562 RILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVS 618
           ++  ++  G    + A  +     R  G  I  L  +  N+ IV    + D   ++++VS
Sbjct: 546 KVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVS 605

Query: 619 SKG 621
             G
Sbjct: 606 KYG 608


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 345/603 (57%), Gaps = 30/603 (4%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 22  YAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 81

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 82  SIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 141

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           +F + +++ + EP + PS  PNLL NG++GIA G AT+IP  N++E+ +  +  ID+P  
Sbjct: 142 NFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPFNLKELIDVIIHRIDSPNC 201

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            +E +L+ + GPDFPTGGII++  + I  +Y  G+G   +RA+   E     +  +VVT+
Sbjct: 202 KLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIVIRAKIVNE-----NDQLVVTD 255

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLM---ES 328
           IP++  K+ +I  I E++ A ++P LE++RDES    +R+VL  +  + D  +L      
Sbjct: 256 IPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVL--QTNTKDEKVLATIKNY 313

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++  +  N NV+   + P  M +   L  +L H   +L    SF ++   +R+E
Sbjct: 314 LYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHAYTILRNAISFDLKKDQKRLE 372

Query: 389 ILKGLLIAYLNIDEIIAII-RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+ A   ID+II II +++DK   +  +++++  +  Q +AI++LRL  L   +  
Sbjct: 373 VINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQAEAIVSLRLYRLTNTDIL 432

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            +K E  +L    ++   LL       + +   +R  K++F+      +RR+T       
Sbjct: 433 ALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFN-----TKRRSTIG--GNI 485

Query: 506 DKATLQQA-MIEKEPITVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIALHAHTTD 561
           +K  + +A +IEK+ + +V S  G I+++   ++  ++ ++L  K+ D L   +   + +
Sbjct: 486 EKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLKIKQDDYLSDLIKVSSLN 545

Query: 562 RILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVS 618
           ++  ++  G    + A  +     R  G  I  L  +  N+ IV    + D   ++++VS
Sbjct: 546 KVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVS 605

Query: 619 SKG 621
             G
Sbjct: 606 KYG 608


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 224/726 (30%), Positives = 374/726 (51%), Gaps = 66/726 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM+E+GL++    +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPHRKSARIVGDAMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD AAA RYTEAR+ +  + + L
Sbjct: 74  YHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYTEARLKKFTQDVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   ++E + EP V P + PNLL NG  GIAVGM TSIP+HN+ E+     
Sbjct: 134 KDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSIPTHNLTEVINGVE 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +DN +I+  +L+EYI GPDFPTGGI++   E + + Y  G G  +VR +   E   + 
Sbjct: 194 AYLDNEDITTAELMEYIPGPDFPTGGIVINKSE-LADIYESGVGKVKVRGKVVFEPGKKK 252

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           +    +V+TEIPY +  +   + I  + +LI  K+   + DI +ES+ E +RIVL  K +
Sbjct: 253 TDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESSKEGIRIVLELK-K 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           + D   L   ++  + +E  F +NM  ++ GR P+V+ L  I++  +  + E+  R+ + 
Sbjct: 312 NADVKKLEHLLYKKTKLEDTFGVNMLTIADGR-PEVLGLRDIIRYNVEFQYEINTRKYTT 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS---------------- 419
            ++      EI +GL+ A   ID II I+R   N  + K  ++S                
Sbjct: 371 LLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTEGIRFKSDKSEKD 430

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +   TE Q  AIL LRL  L  LE   ++ E +  LA   + + +L S K     I  
Sbjct: 431 AKKLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEYEEILGSKKVMKKTIKK 490

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  +K+      + G  R T  E    + A  ++    ++ +  ++   G+ +++ + S
Sbjct: 491 DLERIKK------EYGMERLTVIE--DGEVAVYEEPKFVEQEVVFIMDRFGYAKTIDTAS 542

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595
            + +       +  K       T++I + + +G  + +   N+     R  G  I  L +
Sbjct: 543 FERNKETIYAEN--KYVFKCLNTEKICIFTDNGNLHQVKVVNIPFTKFRDKGTPIDNLGN 600

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMK 651
            N   + +            K L V+ +G   +V+ SE  A+ +    T L +     M 
Sbjct: 601 YNSAGEEIIYLCASKQLEGRKFLFVTKQGMMKLVDGSEFDASKKTVASTKLNIGDSIAMI 660

Query: 652 LVVK-------------VTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD 694
            V               ++   V +  EN   L F +++IPE  +     +G++L+  K+
Sbjct: 661 HVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEIPEKKKSAAGVRGIKLE--KE 718

Query: 695 GGISDV 700
             I++V
Sbjct: 719 DKIAEV 724


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 313/554 (56%), Gaps = 39/554 (7%)

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D 
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPTG +++  R  I  +Y  G+G   +R+R  +E    G   IVVTE PY V
Sbjct: 121 MEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGV 179

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
            K+++ E I  L   KRI  +  +RDES+ E VR V+  + R    ++++ ++F L+ ++
Sbjct: 180 NKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVR-RDASANVILNNLFKLTSLQ 238

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           T F  NM  +  G VP+++ L  I+  ++ H++EV+ RR+ F     + R  IL+GLL+A
Sbjct: 239 TNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVA 297

Query: 397 YLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++DE+I IIRN +     +  ++SRF L+E Q  AIL++RLR L  LE  +I+SE ++
Sbjct: 298 LDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQAILDMRLRRLTGLERDKIQSEYND 357

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LLA    +  +L   ++    I  E+ EVK    K  D  R      EV     +   + 
Sbjct: 358 LLALIADLADILAKPERVVTIIKEEMDEVKR---KYADARRTELMIGEVL----SLEDED 410

Query: 514 MIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + + +SN+G+I+ L        K     +        D ++  +   T D +L 
Sbjct: 411 LIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLF 470

Query: 566 LSTDGKAYT---------------LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +  G+ Y                LP  NLL     GE IQ +I+    +D+   + + +
Sbjct: 471 FTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDEGETIQTIINA-RKEDVANKYFFFT 528

Query: 611 TCKLLVVSSKGNAF 624
           T + +V  +  + F
Sbjct: 529 TQQGIVKRTSVSEF 542


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 148/303 (48%), Positives = 217/303 (71%), Gaps = 2/303 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ L+E I GPDFPT G 
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+ 
Sbjct: 181 IL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVR 239

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            K+I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L  G+ 
Sbjct: 240 DKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ- 298

Query: 352 PQV 354
           P+V
Sbjct: 299 PKV 301


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  310 bits (793), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 319/593 (53%), Gaps = 39/593 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ ++ YA+S I  RA+PD+RDG KPV RR ++ M E+GL +   ++KSARIVG+ +GK
Sbjct: 14  MQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPYRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD LV + Q F +  PL+ G GNFGNI+GDS AA RYTEAR++++  E  L
Sbjct: 74  YHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYTEARLSKITQENFL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D++ VDF   ++E + EP V P K PN L NG+ GIAVGMATS P HN+ E+ +A +
Sbjct: 134 EDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATSTPPHNLAEVIDAEI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + +  ++ + L++YI GPDFPTGGI++ +++ ++E Y  G G  R+R +   E+   G
Sbjct: 194 AFMQDDTLTTKDLMKYIKGPDFPTGGIVI-NKDELLEIYETGVGKIRIRGKVETEKGKNG 252

Query: 265 SWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +AEL   K    + DI ++S+ E +RIV+  K +  
Sbjct: 253 HINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKEGIRIVIELK-KDT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + +     ++  + +E  F +NM  +  GR P+ M L  I++     + E   R+ +  +
Sbjct: 312 NVENFTNLLYKKTKLEDTFGVNMLAIDNGR-PETMSLREIMRACADFQFETATRKYTTLL 370

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPKPVMVS 419
           +    + EI +GL+ A   ID +I I+R                      + +    M +
Sbjct: 371 KKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGINFKSRESKAMAA 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +   TE Q DAIL +RL  L  LE   +  E +  +A   K + +L +       I  ++
Sbjct: 431 QLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYEDILENHDSMAMVIQSDL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++K+ F        R+T    +   + A  ++  +E+  +  ++   G+ +++ + + +
Sbjct: 491 NKIKKEFK-----ADRKTV---IDNRETAVYEEKPVEEMDVAFIMDRFGYAKTIDASTYE 542

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            +    +     K +     T ++   +  G  +T+ A +L  G+   + I +
Sbjct: 543 KNKETIQA--EFKYSFIMKNTGKVCFFTNTGNLHTVKAMDLPQGKMRDKGIPI 593


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 170/415 (40%), Positives = 248/415 (59%), Gaps = 34/415 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ L    +F+K AR+VGEV+GK
Sbjct: 282 LEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHLHPSGSFRKCARVVGEVLGK 341

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+  E  +L
Sbjct: 342 FHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSVDGDPPAAMRYTECRLTRFCEDALL 401

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM+T IP HN+ EI +A +
Sbjct: 402 KNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMSTQIPPHNLHEILDATI 461

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE----- 259
           ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GRG   +R R+ +E     
Sbjct: 462 ALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGRGRVLLRGRFHLEGEDDD 520

Query: 260 ------------------EVGR-------GSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
                             E  R           +V+TE+PY V KS +++ IA++I  K 
Sbjct: 521 GDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVITELPYGVNKSTVMQVIAQMISVKF 580

Query: 295 IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  +  +RDES    +R+VL  + R  D   ++  +   ++++   P+++  L  G  P 
Sbjct: 581 LEGVTSVRDESDWRGIRVVLVLR-RDADAHTILTLLLKHTNLQVYIPMHLIALEKGTKPV 639

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              L  +L  W+A R   L R  +        R  +L+GLL A   +D+++  +R
Sbjct: 640 RFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSLMDDVVKTVR 694


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 197/259 (76%), Gaps = 1/259 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDES 305
           A+L+  K+I  + D+RDES
Sbjct: 240 ADLVRDKKIEGITDLRDES 258


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 291/520 (55%), Gaps = 23/520 (4%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE
Sbjct: 7   KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 66

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP 
Sbjct: 67  ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 126

Query: 194 HNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN+ E+ EA    +DN     E ++  ++E + GPDFPT G+IV + + I ++Y+ GRG 
Sbjct: 127 HNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGS 185

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            R+R    VEE  RG   +V+TE+PYQV     I  IA+ +   ++  + +I D+S++ V
Sbjct: 186 IRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIEDQSSDRV 245

Query: 310 --RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++ H
Sbjct: 246 GLRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDH 303

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           + +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    + 
Sbjct: 304 QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDID 363

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+ E
Sbjct: 364 EIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVE 423

Query: 485 IFSKSTDLGRRRTTFCEVSRADK---ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
              K  D  R R    +   +D+   A                      RS K     + 
Sbjct: 424 ---KHGDARRTRIVAADGDVSDEDLIAREDXXXXXXXXXXXXXXXXXXYRSQKRGGKGVQ 480

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
               K+ D ++      T D IL  +T G     KAY LP
Sbjct: 481 GAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 520


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 223/751 (29%), Positives = 393/751 (52%), Gaps = 38/751 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   + E+++ YA   I+ RAIPD+RDG KPV RRI+++M  +GL    A+KKSAR+VG
Sbjct: 12  SLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKKSARVVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD S+YD+LVR++Q +    PL+   GN G+ID D AAA RYTE R+ +++
Sbjct: 72  DVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEVRLEEIS 131

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ ++++ + +   +++ + EP V P+  PNLL NG  GIA G AT IP HN+ E+ 
Sbjct: 132 ALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPHNLSEVI 191

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           + A+A+I N +I+  +L   I GPDFPTGGI+ ++   I +++  G+G   + A++ +  
Sbjct: 192 DGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNG-GISDAFSKGKGRISLVAKYEIVN 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    I +++IPY + K+ LI +I ++   +++  ++++ D+S  +  ++        
Sbjct: 251 KNK-DISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISIDLEADA 309

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + DL++  +   +DM+  +  N +V      P+++ L  ++K +L H + +  +   + +
Sbjct: 310 NVDLVVNYLLQKTDMQIYYSYN-SVAICNNSPKLVSLSEMIKYYLDHLKNIKLKEIDYDL 368

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDAILNLRL 436
               +R EI++G L      DE+I +IR  D  K      +++ F  T+ Q +AI  +RL
Sbjct: 369 FKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQAEAIAQMRL 428

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L K+++    SE   L  + E +++L N        +   +++V+  F +      R+
Sbjct: 429 YRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQP-----RK 483

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV-DLSALHFKEGDSLKI 553
           T   +   + K    + +I+ E I   I+ +G+ +  SLK+ S+ DL     K+ D L +
Sbjct: 484 TQILKKDFSIKIN-HEDLIKDENIYFGITQQGYYKKISLKNFSLSDLDKYAIKKDDFLIL 542

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
               +  D+I L++       L A  L   S +  G  +++ +D   ++ IV        
Sbjct: 543 LTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINISEN 602

Query: 610 -STCKLLVVSSKGNAFIVE-ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA----V 663
            +   +++VS  G A  V  +S     T+K     K+  +E  +L+     D++A    +
Sbjct: 603 KNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKL--KEHDELIGAYLTDNLANIAII 660

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG--LTWIDSAGRSYN 720
              NR L +  ID IP   R   GV+L + K G     + + I +G  +  IDS   SY 
Sbjct: 661 SNLNRSLKVAEID-IPIYGRNSAGVKLATLKKGE-QIQLAYPIADGEKIAIIDSWA-SYE 717

Query: 721 RSENDLLGWLGKRGGVGSLVPK----GFPRS 747
              N  + +  +   + +L  K     FP+S
Sbjct: 718 EISNSQITFGARGASLKNLKTKLDFAEFPKS 748


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 233/743 (31%), Positives = 386/743 (51%), Gaps = 56/743 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   +  RY  YA   I++RA+PD+RDG KPV RRI+++M E+GL     FKKSAR+VG
Sbjct: 14  SLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPFKKSARVVG 73

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD S+Y+++VR++Q +    PLI   GN G+ID D AAA RYTEAR+++++
Sbjct: 74  DVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMRYTEARLSKIS 133

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L  +  D V F   +++ + EP V P+ FPNLL NG  GIA G AT IP HN+ E+ 
Sbjct: 134 SLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEIPPHNLGEVI 193

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I NP I IE L   I GPDFPTGGII         ++  GRG   + +++   E
Sbjct: 194 DGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFS-GRGRITITSKY---E 249

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V +    IV+TEIPY V KS+L+ +I E+ + K I  + ++RDE+  D   ++       
Sbjct: 250 VHKNQ--IVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVIDLEAGA 307

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   +M+ +   ++++  +  N N+      P +M L  +++ +L H + +   + +F +
Sbjct: 308 DASKIMKFLMQKTELQLYYSYN-NIAIHNNAPVLMNLHDLIQAFLDHVKVIQTNKINFEL 366

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAILNLRL 436
           + + +R+EI++G +      D++I +IR  +  K  +V      F+ +E Q ++I NLRL
Sbjct: 367 EKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSEIQAESIANLRL 426

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLN------SGKQQWNQIACEIREVKEIFSKST 490
             L        K++++  + EK+++++ +N      S + ++N  A  I+  K+I  K T
Sbjct: 427 YRLS-------KTDVEEFIKEKQELETRINFLKTLLSSESEFN--AELIKIFKDI--KKT 475

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KSH-SVDLSALHFKE 547
               R+T   + +     +L   +I+ E   V IS  G+I+    K H S ++     KE
Sbjct: 476 YATPRKTEIKDQALKLDVSLSD-LIQAEETFVGISRDGYIKRFNQKIHDSNEMQTYLLKE 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVTA 605
            D+L       TT ++L+ +  G   ++P   +   +     I L     L  N+ ++  
Sbjct: 535 DDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKV 594

Query: 606 FVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH 660
              D   K   + +++ KG    V+  E    +R+ K++  +K   +    L   +T D 
Sbjct: 595 LYVDDFSKDFSITLITKKGFGKKVQLPEFEV-SRENKSYPAIKFKKDGDELLNAFITNDR 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID-SAGRSY 719
           + ++  N KL ++   +              +K  GI      KI +  T  + SA  +Y
Sbjct: 654 LDILLVNTKLEVYKFSE------------NDFKTYGIK-AAGVKISDNATKFEISAAIAY 700

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             S+ND L +L + G    + PK
Sbjct: 701 --SQNDTLVFLTESGHARKINPK 721


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/402 (40%), Positives = 261/402 (64%), Gaps = 2/402 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPT G I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPT-GGIIQGIEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S GR P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAISEGR-PKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKK 400


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/266 (54%), Positives = 199/266 (74%), Gaps = 2/266 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMARL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  L LI NP+ISI++L+ +I GPDFPT  II  SR  I+E+YR GRG   +RAR  +E
Sbjct: 191 IDGCLVLIANPDISIDELMTHIPGPDFPTASII-NSRAGIIEAYRTGRGRIYMRARSIIE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIE 284
           ++ + G+  IV+TE+PYQ+ K+RLIE
Sbjct: 250 DIDKVGAEQIVITELPYQLNKARLIE 275


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 309/564 (54%), Gaps = 37/564 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +EER+  Y+   I  RAIPD+RDG KPVHRRI+++M  +GLDF   FKKSARIVG+VIGK
Sbjct: 19  MEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY++++ LAQ +    PL+S  GN G+ID D  AA RYTE ++ ++A  I+ 
Sbjct: 79  YHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMRYTEVKLAKIANYIIG 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +  V F   +++ ++EP+V PS FPNLL NG+ GIA+GMAT +P HN+ EI +A + 
Sbjct: 139 DIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPPHNLGEIIDACVY 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---G 262
            I +P+ S  +L  +++GPDFPTGG+I +  + I E+   GR        +C  E+   G
Sbjct: 199 KIKHPKASYSELSNFVLGPDFPTGGVI-KGTKGIAEALENGRNEKNKIKLFCKYEIYTKG 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +  + I +TEIPY V K +L+ +I  +I  K I  + +I+D S  D   +L   + + + 
Sbjct: 258 KNKF-IEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGINILITLDINSNE 316

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           + ++  +F  + M+  +  N N++     P +M L+ ++  ++AH + V     ++ +  
Sbjct: 317 ESILNYLFSKTQMQITYSYN-NIVIDNNSPTLMNLENLISSYIAHIKNVKTLSLNYDLNK 375

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAILNLRLRS 438
              R+EI+ G +       ++I +IR     K  +V+     F+ T+ Q ++I  LRL  
Sbjct: 376 AKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVFNFTKLQAESIAELRLYK 435

Query: 439 LRKLEEYQIKSELDNLLAEKEK---------IDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           L         S+ D  +  KEK         I++LLN+ K+  N +  EI+ +K+ FS  
Sbjct: 436 L---------SQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVP 486

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    + +  +  ++++E I V IS  G+I+      +   +      K
Sbjct: 487 ------RKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIKRFSDKVLENNEWKNYALK 540

Query: 547 EGDSLKIALHAHTTDRILLLSTDG 570
           E D+L      +T + +L  +  G
Sbjct: 541 EKDNLVFFSKVNTVNFLLCFTNLG 564


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 214/700 (30%), Positives = 359/700 (51%), Gaps = 55/700 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+ + +   ++K ARIVG+ +GK
Sbjct: 14  MQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDMYELAIRYDKPYRKCARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEAR+ +V  E+ L
Sbjct: 74  YHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSIEGDGAAAMRYTEARLQKVTQEVFL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PN L NG+ GIAVGM TS P HN+ E+ +A  
Sbjct: 134 ADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGSDGIAVGMVTSTPPHNLGEVIDAVK 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + N +++   L++YI GPDFPTGG IV +++ ++  Y  G G  ++R R  VE+   G
Sbjct: 194 AYMKNDKLTTADLMQYIQGPDFPTGG-IVTNKDELLNIYETGSGKIKLRGRVEVEQDKGG 252

Query: 265 SWCIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
              +V+TEIPY +      + +  +  L+ +K+   + DI ++S+ E +RIVL  K ++ 
Sbjct: 253 KLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDIIDISNQSSKEGIRIVLELKKQT- 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D D L+  ++  + +E  F +NM  ++ GR P+ + L  I++ +L  + ++  R+    +
Sbjct: 312 DVDNLLALLYKKTRLEDTFSVNMLAIADGR-PETLGLKSIIEYFLDFQYDLTTRKYQKLL 370

Query: 381 QAIDRRVEILKGLLIAYL-------------NIDEIIAI--------IRNEDKPKPVMVS 419
                + EI +GL+ A               NI +  A         IR + K      S
Sbjct: 371 AKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKACLMTGTTEGIRFKSKASERAAS 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q  AIL +RL  L  LE   +  + D  L        +L + K     I+ ++
Sbjct: 431 ALDFTERQATAILEMRLYKLIGLEMDALLKDHDATLKNIASYKDILENHKSMSRVISHDL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             +K+ ++        R T  E  RA  A  ++   E   +  +I   G+ +     ++D
Sbjct: 491 DMIKKTYATP------RKTSIENVRA--AVYEEKKAEAMEVVALIDRFGYAK-----TID 537

Query: 540 LSALHFKEGDSL---KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
            +     +  +L   K  +    TD+  + +  G+ + +   ++  GR   ++I L    
Sbjct: 538 KATFERNKEAALSENKYVIDCMNTDKACIFTDTGRLHLIKITDMPFGRFRDKSIPLDNLG 597

Query: 597 NHN---QDIV----TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           N++   ++I+     A ++D+   LL V+  G   +V+ SE   + R          +  
Sbjct: 598 NYDSSGENIIHICSLASIHDAM--LLFVTKTGMLKLVKGSEFDVSKRTVAATKLADGDNI 655

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + + +    + + +  EN   + F +  IPEM +   GVR
Sbjct: 656 ITICIADNFNQLVLQTENGYFIRFPMMNIPEMKKTAIGVR 695


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 216/704 (30%), Positives = 372/704 (52%), Gaps = 44/704 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           LVE+N+        LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 6   LVEQNITE-----TLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDSA--AA 128
             KS+ IVG+ + KL+PHGD ++Y+++VR+ +      +P +  +GNFG         AA
Sbjct: 60  -TKSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMKFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ ++ E I + +D++ V+F D Y+    EPV+ P+ FP +L N   GIAVGMA
Sbjct: 118 PRYTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++I S N+ EIC+   ALID+  + +E   +Y+  PDF +GG ++ S + I + Y+ GRG
Sbjct: 178 SNICSFNLVEICKTTSALIDDENVVLE---DYLKAPDFSSGGQLIYSAKEIRDIYKNGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           GF+VRAR+   +  + + CI + EIPY      +I++I ELI   +I  + D+RDE+   
Sbjct: 235 GFKVRARY---KYDKENNCIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDLS 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     ++ DPD+LM  +F L+ ++  F  N N+L  GR P+VM +  IL EWL  R
Sbjct: 292 GLKLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILINGR-PRVMGVRTILNEWLNFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            E + R+ S+ ++    ++ +L GL    L+ID+ I IIR    E K  P +++ F + E
Sbjct: 351 VECIKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMTGFGIDE 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            Q D I  ++LR+L K  EY +    E +NL+ E  ++  +  +  +    I  ++ E+ 
Sbjct: 411 IQADYIAEIKLRNLNK--EYILNRVGETENLIKEIAELKDIHGNDNKVKKIIQKQLSEIA 468

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F K      RRT      + ++ T +   IE   + V ++   +++ +   S+  +  
Sbjct: 469 KKFGKP-----RRTEIISDEQVEEITTEH-FIEDYNLKVFLTEHNYLKKIPLVSLRANPE 522

Query: 544 H-FKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           H  K+ D +   +  H    +L+ +        + Y +P          GE +  L+ L+
Sbjct: 523 HKLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEIPD---CKASSLGEYLTNLLGLD 579

Query: 598 HNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +++ I+     ++    +L     G    +E S     T + K      S   +  ++ +
Sbjct: 580 NDEKIIYITATNNYEGYMLFFYENGKGAKIEMSGYATKTNRKKLANAYYSGSPLIRMIFI 639

Query: 657 TGD-HVAVVGENRKLLIFSIDQI-PEMSRG-KGVRLQSYKDGGI 697
           T D  +  +    KLL+F+ + I P+ ++  +GV++ + K G +
Sbjct: 640 TEDIELIAISSINKLLVFNTNSINPKTTKNSQGVQILTSKKGSL 683


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 319/574 (55%), Gaps = 20/574 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V EN+   ++   + +R+  Y+   I++RAIPD RDG KPV RRI+++M  + L     F
Sbjct: 12  VTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSEPF 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +   +PLI   GN G+ID D AAA RYT
Sbjct: 72  KKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++EL+L+ +D   V     +++ + EP+V P+ FPNLL NG  GIA G AT IP
Sbjct: 132 ESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEIP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALI NP ISIE+L E + GPDFPTG II    E I ++   G+G   +
Sbjct: 192 PHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINE-IKKALSSGQGRITI 250

Query: 253 RARWCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +++     ++       I + EIP+ V KS+L+  I  + I K+I  ++++ D++  + 
Sbjct: 251 SSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRNG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +        + D ++  +   +++   +  NM  +   R P ++ L   L  +L+H +
Sbjct: 311 ISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNR-PVILNLYSALIAYLSHLK 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTE 425
           EV     ++ ++    R+EI++G +      DE+I +I+  D  K      ++++F  +E
Sbjct: 370 EVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGVILALMNKFKFSE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKE 484
            Q  AI  LRL  L ++++ + + E  NL  + E  + LLN  K ++NQ +  ++ E+K 
Sbjct: 430 LQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLND-KWEFNQYLIKQLLEIKN 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH-SVDLS 541
            +SK       R T     + DK    + + + E   + I+  G+ +  SLK + S +LS
Sbjct: 489 QYSKP------RLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELS 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
               KE D++      ++  +IL  +  G  + +
Sbjct: 543 TFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFII 576


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 186/463 (40%), Positives = 283/463 (61%), Gaps = 9/463 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L     +
Sbjct: 16  VQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTPDRPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P  G I+  R  I E+Y  GRG    
Sbjct: 195 THNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPG-GGIIIGRNGIREAYETGRGTLTT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 254 RSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 314 LVIEIKT-GFDPNAVLAQLFRHTPLQDNFTMNNVALVDGR-PHTMGLKEMLQVWIDHRRI 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR   + D  K  +++ F L + Q
Sbjct: 372 VVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLDDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              IL+LRLR L ++   ++++E D+L    E+++ +L S ++
Sbjct: 432 AQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQE 474


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 148/277 (53%), Positives = 198/277 (71%), Gaps = 4/277 (1%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN  N     E N   V++   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM  
Sbjct: 3   DNTDNPEVF-EPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEV 61

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DG
Sbjct: 62  LGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDG 121

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM +++  +L+ +++D VDF D Y+  +SEP V P++ PNLL NG+SGI
Sbjct: 122 DSAAAMRYTEIRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGSSGI 181

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+  A L +IDN E+SI++LL+ I GPDFPT GII    + I ++Y
Sbjct: 182 AVGMATNIPPHNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAGII-NGADGIRQAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
             G+G   +R+R  VE  G     IVVTE+PYQV K+
Sbjct: 241 ETGKGKIYLRSRSHVE--GEDKQSIVVTELPYQVNKA 275


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 201/268 (75%), Gaps = 2/268 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAED-VRIVL 313
           A+L+  K+I  + D+RDES    +RIV+
Sbjct: 240 ADLVRDKKIEGITDLRDESDRTGMRIVI 267


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 141/260 (54%), Positives = 193/260 (74%)

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+
Sbjct: 1   LNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNL 60

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  
Sbjct: 61  DEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTD 120

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+
Sbjct: 121 LEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPV 180

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L
Sbjct: 181 TIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTL 240

Query: 581 LSGRGHGEAIQLLIDLNHNQ 600
             GRGHGE I++L+D+ ++Q
Sbjct: 241 PGGRGHGEPIRILVDMENDQ 260


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 185/463 (39%), Positives = 282/463 (60%), Gaps = 9/463 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L     +
Sbjct: 16  VQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTPDRPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P  G I+  R  I  +Y  GRG    
Sbjct: 195 THNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPG-GGIIIGRNGIRGAYETGRGTLTT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310
           R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D  +     R
Sbjct: 254 RSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 313

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K    DP+ ++  +F  + ++  F +N   L  GR P  M L  +L+ W+ HRR 
Sbjct: 314 LVIEIKT-GFDPNAVLAQLFRHTPLQDNFTMNNVALVDGR-PHTMGLKEMLQVWIDHRRI 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR   + D  K  +++ F L + Q
Sbjct: 372 VVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLDDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              IL+LRLR L ++   ++++E D+L    E+++ +L S ++
Sbjct: 432 AQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQE 474


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 370/705 (52%), Gaps = 65/705 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K ARIVG+ +GK
Sbjct: 15  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTEAR+ ++  E  L
Sbjct: 75  YHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLAKITQEAYL 134

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP HN+ E+ +A  
Sbjct: 135 ADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATSIPPHNLAEVIDAVE 194

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A + + +IS ++L++ I GPDFPTGGI+V +++ ++E Y  G G  +VR +  VEE+  G
Sbjct: 195 AYMKHEDISTKQLMKCIKGPDFPTGGIVV-NKDDLLEIYESGAGKIKVRGKVEVEEMKGG 253

Query: 265 SWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSL 320
              +V+TEIPY +  +   + +  +  L+  K+   + DI +  S E +RIV+  K +  
Sbjct: 254 KKRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSKEGIRIVIELK-KGA 312

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D + L   ++  + +E  F +NM  ++ GR P+ M L  I++  +  + E+  R+    +
Sbjct: 313 DVENLTNMLYKKTRLEDTFGVNMLAVADGR-PETMGLKKIIEHHVDFQFELATRKYKTLL 371

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MVS 419
                R EI +GL+ A   ID II I+R                             M +
Sbjct: 372 AKERDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQGITENIKFKSGISRKMAA 431

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               TE Q +AIL +RL  L  LE   +  E +  L    + + +LN+    ++ +A  I
Sbjct: 432 MLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARYEDILNN----YDSMAEVI 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  E F K  +  R+R T  E     +A  ++  +E++ +  ++   G+ +++   + +
Sbjct: 488 IEDLEHFKK--EYARKRRTVVE--NGQEAVYEEKKVEEQEVVFLMDRFGYAKTVDVATYE 543

Query: 540 LSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
            +    KE      K  ++   T ++ + +  GK + +   +L  G  R  G+ I  + +
Sbjct: 544 RN----KEAADAENKWIVNCINTGKLCVFTNTGKMHQIKVLDLPYGKFRDKGQPIDNVSN 599

Query: 596 LNHNQDIVT----------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  Q++V           A +  +T + ++   KGN F V +  I A         K+ 
Sbjct: 600 YDSTQEMVVYMCDELQLRYAKLLFATKQGMIKKVKGNEFQVAKRTIAAT--------KLQ 651

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
            ++++  V  +T D HV +  ++   L FS  ++ E  +   GVR
Sbjct: 652 EDDELISVQVITDDQHVVLQTKDGYFLRFSAQEVAEKKKAAVGVR 696


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 225/752 (29%), Positives = 388/752 (51%), Gaps = 80/752 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T++ E +        +++ Y+ Y++S I  RA+PD RDG KPV RR+++AM ++GL++  
Sbjct: 6   TIMAEQIVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLGLNYDK 65

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+ +GK HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD AAA R
Sbjct: 66  PHRKSARIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDGAAAMR 125

Query: 131 YTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTEA++ +  + + L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGM T
Sbjct: 126 YTEAKLKKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+ +A  A +D+  I+ E L+EY+IGPDFPTGG++V   E +   Y  G G 
Sbjct: 186 NIPTHNLGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGGLVVNKSE-LPAIYESGTGK 244

Query: 250 FRVRARWCVEEVGRGSW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDE 304
            ++R +   E   + S    +V+TEIPY +      + +  + +L+  K+   + DI +E
Sbjct: 245 IKLRGKVVFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIVDISNE 304

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S+ E +RIVL  K R+ D + L   ++  + +E  F +NM  +  G+ P+ + L  I+K 
Sbjct: 305 SSKEGIRIVLELK-RNADVEKLKNMLYKKTKLEDTFGVNMLAIVDGK-PETLGLKSIIKH 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV-- 418
            +  + ++  R+ +  +       EI +GL+ A   ID II I+R   N  + K  +V  
Sbjct: 363 HIDFQYQLATRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDCLVNG 422

Query: 419 ----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                           S    TE Q  AIL LRL  L  LE  +++ + +  L +  + +
Sbjct: 423 NVKDINFKSETSRKAASGLHFTERQASAILELRLYRLIGLEILELQKQYEQTLKKIAEYE 482

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S     N I  +++ +K+ ++        R T  E ++A  A  ++  ++++ +  
Sbjct: 483 KILGSRTAMKNVIKKDLQAIKKEYALP------RKTVIEDAKA--AVFEEEKVKEQEVVF 534

Query: 523 VISNRGWIRSLK--SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           ++   G+ +++   ++  ++ A+H    +  K       TD+I + + +G  + +   +L
Sbjct: 535 IMDRFGYSKTIDIAAYERNMEAVH----NENKYIFKCMNTDKIYIFTDNGNLHQIKVMDL 590

Query: 581 LSGRGHGEAIQLLIDLNHNQD-------IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
              +   + +   ID   N D        ++A    + CKLL V+ +G   +V+ SE  A
Sbjct: 591 PFTKFRDKGVP--IDNVGNYDSSGENIVFLSAAGNITGCKLLFVTKQGMMKLVDTSEFEA 648

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-----------------------TGDHVAVVGENRKL 670
            ++K     K++  + +  ++K                        +  +V V  EN   
Sbjct: 649 -SKKTVAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVF 707

Query: 671 LIFSIDQIPEMSRGK-GVR-LQSYKDGGISDV 700
           L F + +IP+  +   GVR ++  KD  + DV
Sbjct: 708 LKFPLTEIPQKKKNAVGVRGIKLVKDDTVDDV 739


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 195/627 (31%), Positives = 343/627 (54%), Gaps = 35/627 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+   VE  +        + + +  Y LS + +RA+PD RDG KPV RRI+  M E    
Sbjct: 7   NTEKTVETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGMREARYL 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                 KSA +VG ++G  HPHGD SVYD+ VR+AQPF  RYPLI GQGN G+ DGD+ A
Sbjct: 67  ASRPTVKSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSEDGDAPA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED--SEPVVFPSKFPNLLANGTSGIAV 185
           AYRYTE R++ +AE ++  ++ + V    TY ++    EP   P + P ++ N +SGIAV
Sbjct: 127 AYRYTEMRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPVV-NPSSGIAV 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T+IP HN+ E+  A +AL+D P++++++L+ YI GPDF  GG I+ + E I + +  
Sbjct: 186 GLSTNIPPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHIIGT-EGIRDYFTT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDE 304
           G+G   VRA   +EE  R S  +VVT IP    + ++   I +   A+++  ++ D+RDE
Sbjct: 245 GKGRIIVRAEVRLEETPR-SRALVVTRIP-PTGRDKVKASIIKAFNARKLEGMMADLRDE 302

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM-----NVLSMGRVPQVMPL 357
           S  +   RIVL  + + +D    +E ++  +D++      M     + +   R P+   +
Sbjct: 303 SDTEKGTRIVLELR-KDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPKQTGM 361

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDK--PK 414
             +L  W AH+ ++L RR+ + ++    R+ +++GL+    + +EI+ I  ++ED+   +
Sbjct: 362 LELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDRASAR 421

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +  R+SLTE Q D I ++ L  + KL+  + + E D L    E++++LL + +   + 
Sbjct: 422 RAIEERYSLTEIQSDVIASMTLSQVTKLDSGKYQRERDELQRRIEELENLLANRRALISL 481

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ--AMIEKEPITVVISNRGWIRS 532
           +  E++++   F+        R T+ +V     A +    ++ E+EP+TV  +  G +++
Sbjct: 482 LKKEMQQLMRQFADE------RRTYIDVEGQPHAPITHVASLHEREPLTVAFAFPGTLKA 535

Query: 533 L-------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSG 583
           L       K  +  L+    +  + L+  +   T D +L +S+ G+ + + +    L++ 
Sbjct: 536 LAPDTFKPKQKNGVLAYNPVRGDEQLRQVVATTTRDYLLCMSSTGRVFQVGSHRLPLVTR 595

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              GE I+ L++L   ++IV     D+
Sbjct: 596 SAKGEVIRDLLELAPGEEIVAVVPIDA 622


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 213/716 (29%), Positives = 374/716 (52%), Gaps = 49/716 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KKSAR+VG+VIGK
Sbjct: 17  LAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE R+ +++E +L+
Sbjct: 77  YHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLE 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP HN+ E+ +A + 
Sbjct: 137 LISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATIL 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ + + + E   G 
Sbjct: 197 MIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQ 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L    +  +PDL+
Sbjct: 255 NVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLI 314

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   + ++  +  N +V      P+++ +  ++  +L H R++     +F +    +
Sbjct: 315 INYLLQKTHLQIHYSYN-SVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKK 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAILNLRLRSLRK 441
           R+EI+ G L      DE+I +IR  D  K  +VS     F+ ++ Q +AI ++RL  L K
Sbjct: 374 RLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSK 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL----GRRRT 497
           +E+     E  NL     +   L+   K +++         K + +  TD     G+ R 
Sbjct: 434 IEQQIYLEESKNLEKNIARFKKLI-ENKDEFD---------KNLINMLTDFKKHHGKPRK 483

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIA 554
           T    S       +  +++ E     I+  G  + L    S   ++       GD     
Sbjct: 484 TKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQ 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
              +   + + L+  G+   L    +  L+ +     +++ + + +NQ I++ F  DS  
Sbjct: 544 GIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFE 603

Query: 611 TCKLLVVSSK---------GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           + + L+  SK              +++ ++  I   ++G   + V  EEK+K +V +T  
Sbjct: 604 SSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLIT-- 661

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWID 713
                 +NR L + SI +IP  +R   G+++  + K+  IS     +  E L  ID
Sbjct: 662 -----TQNRALKM-SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVID 711


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 318/555 (57%), Gaps = 30/555 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE+ Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA IVG+ + 
Sbjct: 34  TLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSANIVGQTM- 90

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGN-IDGDSA-AAYRYTEARMTQVAE 141
           +L+PHGDQ++Y+++VRL++ +    +P +  +GNFG     D A AA RYTEA++  +  
Sbjct: 91  RLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDMAYAASRYTEAKLDPICN 150

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D+D V+F   Y+    EP + P+ FP++L N   GIAV MA++I   N+QE+CE
Sbjct: 151 ELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAICPFNLQEVCE 210

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A + N E  + ++L+   GPDFP GG +V++   + + YR GRG  RVR+R+  +  
Sbjct: 211 ATIAFMKNSECDLTEILK---GPDFPGGGFLVQNPSELEKIYRTGRGSIRVRSRYNYD-- 265

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            + + CI +TEIP       +++KI +L+   ++  + D+RDE+      +     R  D
Sbjct: 266 -KSNNCIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKLTIDLKRGTD 324

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD LM  +F L+ +E  +  N NVL  G  P+V+ +  +L EW+A R E + RR  F + 
Sbjct: 325 PDRLMRRLFKLTPLEDSYSCNFNVLIAG-TPRVLGVYDLLDEWVAFRVECIKRRVWFELT 383

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
               ++ +L+GL    L+ID+ I I+R  ++ K   P ++  F + E Q + +  ++LR 
Sbjct: 384 KKKEKLHLLQGLQKILLDIDKAIRIVRETEEEKEVVPNLMIGFGIDEIQAEYVAEIKLRH 443

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K  +E+D L+ E   ++ +L + K++  QI   I+E+K++  K     R  
Sbjct: 444 LNR--EYILKRTAEIDQLIQEIADMEEIL-ADKRRVKQII--IKELKDVIKKYAQPRRSL 498

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
             + +    D+   ++  I   P+ V +S +G+ + +   S+ +S  H  KE D  ++  
Sbjct: 499 FIYPDSVFDDE---EEEEIPNYPVHVFLSEQGYFKKITPQSLRMSGEHKLKEDD--RMIT 553

Query: 556 HAHTTDRI-LLLSTD 569
           H  TT+   LL  TD
Sbjct: 554 HIETTNNTDLLFFTD 568


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 213/716 (29%), Positives = 375/716 (52%), Gaps = 49/716 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E+++ Y+   I++RAIPD++DG KPV RRI+++M ++GL     +KKSAR+VG+VIGK
Sbjct: 17  LAEKFIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE R+ +++E +L+
Sbjct: 77  YHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLE 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP HN+ E+ +AA+ 
Sbjct: 137 LISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDAAIL 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ + + + E   G 
Sbjct: 197 MIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQ 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L    +  +PDL+
Sbjct: 255 NVIEITSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVSILIELEQDGNPDLI 314

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   + ++  +  N +V      P+++ +  ++  +L H R++     +F +    +
Sbjct: 315 INYLLQKTHLQIHYSYN-SVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKK 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAILNLRLRSLRK 441
           R+EI+ G L      DE+I +IR  D  K  +V+     F+ ++ Q +AI ++RL  L K
Sbjct: 374 RLEIITGFLKVADITDEVIKVIRASDNSKVGVVNDLIKFFNFSQTQAEAIASMRLYRLSK 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL----GRRRT 497
           +E+     E  NL     K   L+   K +++         K + +  TD     G+ R 
Sbjct: 434 IEQQIYLEESKNLEKNITKFKKLI-ENKDEFD---------KNLINMLTDFKKHHGKPRK 483

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIA 554
           T    S       +  +++ E     I+  G  + L    S   ++       GD     
Sbjct: 484 TRIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQ 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
              +   + + L+  G+   L    +  L+ +     +++ + + +NQ I++ F  DS  
Sbjct: 544 GIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFE 603

Query: 611 TCKLLVVSSK---------GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           + + L+  SK              +++ ++  I   ++G   + V  EEK+K +V +T  
Sbjct: 604 SSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLIT-- 661

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWID 713
                 +NR L + SI +IP  +R   G+++  + K+  IS     +  E L  ID
Sbjct: 662 -----TQNRALKM-SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVID 711


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 213/656 (32%), Positives = 345/656 (52%), Gaps = 59/656 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD RDG KPV RR+++AM ++GL++    +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV LAQ F +   L+ G GNFG+I+GD AAA RYTEA++ +  + + L
Sbjct: 74  YHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEAKLKKFTQDVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D+D VDF   ++E + EP V P + PN+L NG  GIAVGMAT+IP+HN+ E+ +A +
Sbjct: 134 ADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNIPTHNLGEVVDAVI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-VGR 263
           A +DN  I+ E+LL+ + GPDFPTGG IV ++  + + Y  G G  ++R +   E+  GR
Sbjct: 194 AYMDNNNITTEELLQIMPGPDFPTGG-IVANKSDLKDIYENGTGKLKLRGKLEFEKGKGR 252

Query: 264 GSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319
               +V+TEIPY +  +   + I  + +L+  K+   + DI + S E+ +RIVL  K + 
Sbjct: 253 EKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDENGIRIVLELK-KG 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D + L   ++  + +E  F +NM  ++ GR P+VM L  I+K  +  + E+  R+ +  
Sbjct: 312 ADVEKLKNILYKKTKLEDTFGVNMLAIADGR-PEVMGLKSIIKYNVDFQYELAQRKYTTL 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------MV 418
           +     + EI +GL+ A   ID II IIR     K V                     + 
Sbjct: 371 LNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVHGKTDDIKFKNPESEILA 430

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
              S TE Q  AIL LRL  L  LE   ++ E + L+ +  + + +L + K     I  +
Sbjct: 431 GNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYEDILENRKTMTKTIKKD 490

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++ +K+ ++        R T  E  + +    + A +E+E +  V    G+ + L   + 
Sbjct: 491 LKAIKKEYALP------RKTLIEDGK-EAVFDENAFVEQE-VVFVQDKFGYSKLLDPAAF 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583
           D +     + +  K       TD I + + +G  +                +P  NL + 
Sbjct: 543 DRNIESVTKEN--KYYFRCMNTDSICIFTDNGNVHQIKVSAIPTKKVREKGIPIDNLGNY 600

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              GE+I  L+  +  +D    F   +T   ++    GN F      ++A T+ GK
Sbjct: 601 SSQGESIVTLVSFDMIKDKKLLF---TTKNGMIKLVDGNEFETNRKTMLA-TKLGK 652


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 213/716 (29%), Positives = 374/716 (52%), Gaps = 49/716 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KKSAR+VG+VIGK
Sbjct: 17  LAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE R+ +++E +L+
Sbjct: 77  YHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLE 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP HN+ E+ +A + 
Sbjct: 137 LISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATIL 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP I+IE++   I+GPDFPTGG IV  +  I ++++ G+G  ++ + + + E   G 
Sbjct: 197 MIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQ 254

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L    +  +PDL+
Sbjct: 255 NVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLI 314

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   + ++  +  N +V      P+++ +  ++  +L H R++     +F +    +
Sbjct: 315 INYLLQKTHLQIHYSYN-SVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKK 373

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAILNLRLRSLRK 441
           R+EI+ G L      DE+I +IR  D  K  +VS     F+ ++ Q +AI ++RL  L K
Sbjct: 374 RLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSK 433

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL----GRRRT 497
           +E+     E  NL     +   L+   K +++         K + +  TD     G+ R 
Sbjct: 434 IEQQIYLEESKNLEKNIARFKKLI-ENKDEFD---------KNLINMLTDFKKHHGKPRK 483

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIA 554
           T    S       +  +++ E     I+  G  + L    S   ++       GD     
Sbjct: 484 TKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQ 543

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
              +   + + L+  G+   L    +  L+ +     +++ + + +NQ I++ F  DS  
Sbjct: 544 GIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFE 603

Query: 611 TCKLLVVSSK---------GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           + + L+  SK              +++ ++  I   ++G   + V  EEK+K +V +T  
Sbjct: 604 SSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLIT-- 661

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWID 713
                 +NR L + SI +IP  +R   G+++  + K+  IS     +  E L  ID
Sbjct: 662 -----TQNRALKM-SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVID 711


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 147/334 (44%), Positives = 227/334 (67%), Gaps = 8/334 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E    GS  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +   RIV+ PK+  +D DLLM  +F  +D+E  +
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSY 330


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 235/754 (31%), Positives = 385/754 (51%), Gaps = 69/754 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD+RDG KPV RR++  M E+ +       KSARI G+ +GK
Sbjct: 14  MQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPTLKSARICGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++LV LAQ F +   L+ GQGNFG+I+GDSAAA RYTEAR+ +  E +L 
Sbjct: 74  YHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYTEARLEKFTEEVLL 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                +V F+  Y+ +  EPVV P+K P  L NG+ GIAVGM TS PSHN+ E+    L+
Sbjct: 134 QDLALSVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTPSHNLSEVISLILS 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264
            + NPE+S+ ++LE + GPDFPTGGI+    E + E YR G+G  R+R +   E+  GR 
Sbjct: 194 YLKNPELSLSEMLEIMPGPDFPTGGIVANQSE-LEEIYRTGQGRLRLRGKLSFEKKEGRS 252

Query: 265 SW-CIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319
               +VVTEIPY +     S+ ++ +A L   K+I  + DI ++S E  +RIVL  K+ +
Sbjct: 253 DRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNEQGIRIVLELKSGA 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D + +   ++  + +E  FP+NM  ++ GR P+ + L  IL+E+L  + E L  + S  
Sbjct: 313 -DIEKIENILYKKTKLEDSFPVNMLAIAHGR-PETLSLKRILEEYLGFQVERLEAKFSKL 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVM------------------ 417
           ++  +R+ EI +GL+ A   ID IIA++R    ++D    +M                  
Sbjct: 371 LEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLSLIQLKERDEVFRK 430

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            +  F  T+ Q  AIL++RL  L  LE   ++      L   +    LL S K  +  + 
Sbjct: 431 TIEGFRFTDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNYKELLGSKKVLYAHLE 490

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ ++++ + K      R+T  C+   A +A      IE+  +  +    G+++ +   
Sbjct: 491 QELLQIQKDYGKE-----RKTKICD---AREAVYDDTAIEEMDLYYLQDRFGYVKCVDPG 542

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LI 594
           +   +     E D   + L    TDR+L  +  G  + +   ++   +   + + L  L 
Sbjct: 543 TFQRNKESI-EADYAYV-LPCKNTDRLLFFTDLGNMHQIKILDVPVTKFKDKGVPLDNLS 600

Query: 595 DLNHNQD-IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---------LKV 644
             +  Q+ +V  F+        V+  +   F+ E+++I     KG+ F          K+
Sbjct: 601 KFSAEQERVVAVFIRK------VLEEETLLFVTEQAQI--KRVKGEEFATQNRLVQATKL 652

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDGGISDVICF 703
             E+++  V+ V  + + +  E+   L FS+ ++P +    KGV   S +       +  
Sbjct: 653 GEEDRLLSVLPVGEEDIVLETEDSYFLRFSLSEVPLQKKTAKGVLAMSLRPKDYVKKVYS 712

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              E    ++S   +  R +       GKRGG G
Sbjct: 713 LAAEENVELESKTLNLQRLKQ------GKRGGKG 740


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 232/744 (31%), Positives = 379/744 (50%), Gaps = 80/744 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM  +GL++    +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYTEA++ +  + + L
Sbjct: 74  YHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEAKLKKFTQDVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM T+IP HN+ E+ +A  
Sbjct: 134 ADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNIPPHNLSEVVDAVC 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +DN +I+ ++L++   GPDFPTGGI++   E +   Y  G G  ++R +   E     
Sbjct: 194 AYMDNEDITTDELMQLCPGPDFPTGGIVINKSE-LGAIYETGTGKIKLRGKVIFEPAKNR 252

Query: 265 SW--CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           S    +V+TEIPY +      + I  +  LI  K+   + DI +ES+ E +RIVL  K +
Sbjct: 253 SEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSKEGIRIVLELK-K 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           + D   L   ++  + +E  F +NM  +  GR P+ + +  I+K  +  + E+  R+ + 
Sbjct: 312 NADVKNLENLLYKKTKLEDTFGVNMLAIVDGR-PETLGIKDIIKHHINFQYELATRKYTT 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV----------------- 418
            ++      EI +GL+ A   ID II I+R   N    K  +V                 
Sbjct: 371 LLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEGIKFKSEQSKKQ 430

Query: 419 -SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +    TE Q  AIL +RL  L  LE   ++ E D  + + EK + +L S K+    I  
Sbjct: 431 AAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYEKILGSRKEMAKVIKA 490

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  +K+      + G  R T  E   A  A  ++  I +  +  ++   G+ R     +
Sbjct: 491 DLLNIKK------EYGVERRTVIEDGEA--AVFEEKKIPEMEVMFIMDRFGYAR-----T 537

Query: 538 VDLSALHFKEGDSL----KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
           +D++A   +  D++    K  +    TD+I + +  G  + L   +L     R  G  I 
Sbjct: 538 IDMAAFE-RNKDAVFNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDKGTPID 596

Query: 592 LLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI------IANTR---KGK 639
            L + + +++I   +T F      K+L V+ +G   +V+  E       +A T+     K
Sbjct: 597 NLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKRTVACTKLADDDK 656

Query: 640 TFLKVSSEEKMKLVVKVTGD-------------HVAVVGENRKLLIFSIDQIPEMSRGK- 685
                S++ ++++  K + D             +V V  EN   L F +  IP   +   
Sbjct: 657 LIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPMKKKSAV 716

Query: 686 GVR-LQSYKDGGISDVICFKICEG 708
           GVR ++  KD  I DV  F + EG
Sbjct: 717 GVRGIKLSKDDYIEDV--FLLTEG 738


>gi|332653603|ref|ZP_08419348.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
 gi|332518749|gb|EGJ48352.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 750

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 207/684 (30%), Positives = 360/684 (52%), Gaps = 33/684 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  G A  KSA +VG+ + 
Sbjct: 33  TLELNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKL-LGGARTKSANVVGQTM- 89

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGDSA-AAYRYTEARMTQVAE 141
           KL+PHGD ++YD++VRL++ +    +P +  +GNFG +   D A AA RYTE R+  +  
Sbjct: 90  KLNPHGDAAIYDTMVRLSRGYGALLHPFVDSKGNFGKVYSRDMAWAASRYTEVRLDAICG 149

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D+D VDF D Y+ +  EP + P+ FPN+L +   GIAVGMA+++   N+ E+C+
Sbjct: 150 ELFRDIDQDTVDFVDNYDGKMKEPTLLPTTFPNVLVSANQGIAVGMASNLCGFNLGEVCD 209

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             +A + +PE     L+  + GPD PTGG ++   +++ E YR GRG F+VR++W     
Sbjct: 210 TTIAYLKDPECD---LMATLKGPDLPTGGELIYDEKALGEIYRTGRGSFKVRSKW---RY 263

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +    I + EIPY      +++K+AELI A +I  + D+RDE+      +     R  D
Sbjct: 264 LKSENLIEIYEIPYSTTSEAIMDKVAELIKAGKIKEIADMRDETDLSGLKLTIDLKRGTD 323

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD LM  +F  + +      N N+L  G +P+VM +  IL+EW A R + + RR    M+
Sbjct: 324 PDKLMAKLFRATPLMDSQSCNFNILIAG-MPRVMGVREILEEWTAWRMDCVRRRVYHEMK 382

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
             + ++ +LKGL    L+ID  IAIIR  ++     P ++  F + + Q + + ++RLR+
Sbjct: 383 KKEDKLHLLKGLRRILLDIDRAIAIIRETEEDAEVVPNLMIGFGIDQIQAEYVADIRLRN 442

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + K  EY +K   E++ L  E   + + +N  K+    I  E+ +VK+ +++      RR
Sbjct: 443 INK--EYILKRTQEVEALEGEIADLQATVNDPKRIRKIITKELTDVKKKYAQP-----RR 495

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIAL 555
           T        ++   Q+      P+ + +S  G+++ +   S+ +++   +KEGD   +  
Sbjct: 496 TDIVYEHMLEEEP-QEDETPDYPVNLFLSREGYLKKITPQSLRMASDQKYKEGDGPFLQW 554

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY-DSTC 612
            A   D +L+ +   + Y          +    G+ +   + +   + ++ A +  D + 
Sbjct: 555 EATNRDELLVFTDKQQCYKTRLSEFDDSKASVLGDYLPTKLSMEAEERVLWACIPGDYSG 614

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
           +LL     G    VE S     TR+ K     S +  +   + +  D  +AV   + + +
Sbjct: 615 QLLFFFENGKVARVELSAYQTQTRRKKLTGAYSDKSPLVSALLLREDLEMAVYSSDGRCM 674

Query: 672 IFSIDQI-PEMSR-GKGVRLQSYK 693
           IF    + P+ +R  +GV + + K
Sbjct: 675 IFHTAALAPKTTRTTQGVNVMALK 698


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 289/455 (63%), Gaps = 5/455 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           I++L+L  L   + ++++SE  +L  +   ++ +L
Sbjct: 423 IVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/339 (45%), Positives = 218/339 (64%), Gaps = 12/339 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           E R+       L   D DA      VDF   ++    EP + P++ P+LL NG+SGIAVG
Sbjct: 198 ECRLDVGCFFFL---DIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVG 254

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ G
Sbjct: 255 MATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTG 313

Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDE
Sbjct: 314 RGRVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDE 373

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           S      V+    R  DP +++ +++  + +++ F  NM
Sbjct: 374 SDRSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNM 412


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 199/587 (33%), Positives = 323/587 (55%), Gaps = 42/587 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      +KSARIVG+ +GK
Sbjct: 14  MQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +  +
Sbjct: 134 KDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDTVM 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR- 263
           A IDNPE + ++LL+ + GPDFPTGGII  ++  ++  Y  G G  ++RA+  VE   R 
Sbjct: 193 AYIDNPECTTKELLDILHGPDFPTGGIIA-NKSDLLNIYETGSGRIKLRAKLEVELGKRR 251

Query: 264 -GSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
                ++++EIPY +  +   + +  IA+L+ +K++  + DI ++S  E +RIVL  K +
Sbjct: 252 VDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGIRIVLELK-K 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  + +E  F +NM  ++ GR P+ + L GILK +L  + E   R+ + 
Sbjct: 311 DADIEKIKNILYKKTKLEDTFGVNMLAIAGGR-PETLTLKGILKNYLDFQYENNTRKYNV 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419
            ++    + EI +GL+ A   ID IIAI+R     K                        
Sbjct: 370 LLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLMEGDISNIHFKTPGFDED 429

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L+S     + I  
Sbjct: 430 ARKLRFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEYEKILSSKLTMDDVIKK 489

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++ E+K  F+       RRT    +    +A   +  +E   +  V+   G+ + +   +
Sbjct: 490 DLEEIKAEFATP-----RRTL---IEDGKEAVYDETAVEIREVVFVMDKFGYGKLVDRAT 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            D +     EG++  + +    TD+I L +  G  + + A ++  G+
Sbjct: 542 YDRNQETI-EGENPHV-IPCLNTDKICLFTDTGLLHQVKASDIPFGK 586


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 227/747 (30%), Positives = 383/747 (51%), Gaps = 83/747 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RA+PD+RDG KPV RR+++AM E+ L      +KSARIVG+ +GK
Sbjct: 14  MQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAMDELNLRHDRPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELIL 144
            HPHGD S+Y+SLV + Q F +  PL+ G GNFG+I+GD AAA RYTEAR+ +   E+ L
Sbjct: 74  YHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSIEGDGAAAMRYTEARLKKFTQEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSIP HN+ E+ +A +
Sbjct: 134 ADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-VGR 263
           A +++  ++ E LL YI GPDFPTGG++V +++ I   Y  G G  ++R +   E    R
Sbjct: 194 AYLEDESVANEDLLTYIQGPDFPTGGLVV-NKKDIKTIYTEGSGKLKLRGKVVFEPGKKR 252

Query: 264 GSW-CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318
           G    +V+TEIPY +      + +  +  L+ +K+   + DI +ES+ E +RIVL  K +
Sbjct: 253 GEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELK-K 311

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + L   ++  + +E  F +NM  +  GR P+ +     L++ +AH  E  +     
Sbjct: 312 GTDIERLKNLLYKKTKLEDTFGVNMLAIVDGR-PETLS----LRDIIAHHTEFHYGLVKR 366

Query: 379 RMQAI-----DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------ 415
           + Q +     D+R E+ +GL+ A   ID II I+R     K                   
Sbjct: 367 KYQTLLSKLYDQR-EVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFKSS 425

Query: 416 ---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              +   + S TE Q +AIL+LRL  L  LE   ++ E + ++A   + + +L++     
Sbjct: 426 ESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVANIAEYEDILHNPVSMQ 485

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  ++ ++K+ + +      RRT    V    +A  ++  +++E +  V+   G+ ++
Sbjct: 486 RVMKQDLMKIKKEYQRE-----RRTV---VEDGAEAVFEEEPLKEEQVYFVMDRFGYAKT 537

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHG 587
               +   +  +       K  +    TD+I + +  G     K   +PAG     +  G
Sbjct: 538 FDKATYQRNQENASR--DYKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKY---KDKG 592

Query: 588 EAIQLLIDLNHNQDIVT------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             I  L + + + + +       A  +DS   L   + +G   IV  +E    T++  + 
Sbjct: 593 TPIDNLGNYDSSDEAIIAVLAAEAMTHDS---LFFATEQGMLKIVSGTEFQV-TKRTVSA 648

Query: 642 LKVSSEEKMKLV--VKVTG-----DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690
            K+S  + +  V  +K  G     D V +  +    L FS++++PE  +G    +G++L 
Sbjct: 649 TKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLN 708

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGR 717
             KD  +      +  +G+T +D  G+
Sbjct: 709 --KDDILLHTYLME-ADGITSMDYKGK 732


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 215/705 (30%), Positives = 369/705 (52%), Gaps = 40/705 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N L+E+ +        LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  
Sbjct: 3   TNNLIEQRIVD-----TLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLT 56

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG-NIDGD-S 125
           G    KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG +   D  
Sbjct: 57  GEK-TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK 114

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAV
Sbjct: 115 YAAPRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAV 174

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMA+SI S N+ E+C AA+  I +    +  +L+    PDFPTGG ++ +   + E Y  
Sbjct: 175 GMASSICSFNLVEVCNAAVEFIKDENTDLVGILK---APDFPTGGQLIYNEREMREIYEK 231

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE+
Sbjct: 232 GRGTFKLRAKY---RYDKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDET 288

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   +     R+ DPD LM  ++ L+ +E  F  N N+L  GR P VM + GILKEW+
Sbjct: 289 DLNGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGR-PMVMGVRGILKEWV 347

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
             R + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F 
Sbjct: 348 NFRMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGFG 407

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + + Q + +  ++LR+L K  EY +K  SE+++L  E  +++ L  S K+    I  ++ 
Sbjct: 408 IDQAQAEFVAEIKLRNLNK--EYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLE 465

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ + +      G+ R T   +    +    + +IE   + + ++ + +++ +   S+  
Sbjct: 466 EIAKKY------GQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRT 519

Query: 541 SALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN 597
           S  H  KEGD +   L  H    +LL S     Y +    +   +    GE +  ++ L 
Sbjct: 520 SPEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLE 579

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             ++I+     D     ++   +    A IV ES      RK K     +   ++  +  
Sbjct: 580 EGEEIIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRK-KLANAYNGLSRLVYIGH 638

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
           +  D   V   +  K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 639 ILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  300 bits (768), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 215/706 (30%), Positives = 370/706 (52%), Gaps = 40/706 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N L+E+ +        LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL 
Sbjct: 2   STNNLIEQRIVD-----TLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLL 55

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG-NIDGD- 124
            G    KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG +   D 
Sbjct: 56  TGEK-TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDM 113

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIA
Sbjct: 114 KYAAPRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIA 173

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+SI S N+ E+C AA+  I +    +  +L+    PDFPTGG ++ +   + E Y 
Sbjct: 174 VGMASSICSFNLVEVCNAAVEFIKDENTDLVGILK---APDFPTGGQLIYNEREMREIYE 230

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE
Sbjct: 231 KGRGTFKLRAKY---RYDKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDE 287

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +  +   +     R+ DPD LM  ++ L+ +E  F  N N+L  GR P VM + GILKEW
Sbjct: 288 TDLNGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGR-PMVMGVRGILKEW 346

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           +  R + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F
Sbjct: 347 VNFRMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGF 406

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + + Q + +  ++LR+L K  EY +K  SE+++L  E  +++ L  S K+    I  ++
Sbjct: 407 GIDQAQAEFVAEIKLRNLNK--EYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQL 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+ + +      G+ R T   +    +    + +IE   + + ++ + +++ +   S+ 
Sbjct: 465 EEIAKKY------GQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLR 518

Query: 540 LSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDL 596
            S  H  KEGD +   L  H    +LL S     Y +    +   +    GE +  ++ L
Sbjct: 519 TSPEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSL 578

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
              ++I+     D     ++   +    A IV ES      RK K     +   ++  + 
Sbjct: 579 EEGEEIIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRK-KLANAYNGLSRLVYIG 637

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
            +  D   V   +  K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 638 HILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 215/706 (30%), Positives = 370/706 (52%), Gaps = 40/706 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N L+E+ +        LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL 
Sbjct: 2   STNNLIEQRIVD-----TLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLL 55

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG-NIDGD- 124
            G    KSA +VG+ + KL+PHGD ++Y++LVRL +       P +  +GNFG +   D 
Sbjct: 56  TGEK-TKSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDM 113

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIA
Sbjct: 114 KYAAPRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIA 173

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMA+SI S N+ E+C AA+  I +    +  +L+    PDFPTGG ++ +   + E Y 
Sbjct: 174 VGMASSICSFNLVEVCNAAVEFIKDENTDLVGILK---APDFPTGGQLIYNEREMREIYE 230

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE
Sbjct: 231 KGRGTFKLRAKY---RYDKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDE 287

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +  +   +     R+ DPD LM  ++ L+ +E  F  N N+L  GR P VM + GILKEW
Sbjct: 288 TDLNGLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGR-PMVMGVRGILKEW 346

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRF 421
           +  R + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F
Sbjct: 347 VNFRMDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMEGF 406

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + + Q + +  ++LR+L K  EY +K  SE+++L  E  +++ L  S K+    I  ++
Sbjct: 407 GIDQAQAEFVAEIKLRNLNK--EYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQL 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+ + +      G+ R T   +    +    + +IE   + + ++ + +++ +   S+ 
Sbjct: 465 EEIAKKY------GQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLR 518

Query: 540 LSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDL 596
            S  H  KEGD +   L  H    +LL S     Y +    +   +    GE +  ++ L
Sbjct: 519 TSPEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSL 578

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
              ++I+     D     ++   +    A IV ES      RK K     +   ++  + 
Sbjct: 579 EEGEEIIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRK-KLANAYNGLSRLVYIG 637

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
            +  D   V   +  K+LIF+   I P+ +R  +GV++   K G +
Sbjct: 638 HILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSV 683


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 222/709 (31%), Positives = 372/709 (52%), Gaps = 61/709 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     +KSARIVG+ +GK
Sbjct: 14  MQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLKKFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +A  
Sbjct: 134 KDLDK-TVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSIPPHNLGEVIDAVK 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A IDN  +++E+L++Y+ GPDFPTGGII  ++  +++ Y  G G  R+R R  V E+GR 
Sbjct: 193 AYIDNRLLTVEELMQYMPGPDFPTGGIIA-NKGDLLQIYETGAGKIRLRGRIEV-ELGRR 250

Query: 265 SW---CIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
                 +V+TEIPY +  +   + +  +A+L+  +++  + DI ++S+ E +RIVL  K 
Sbjct: 251 KADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSSKEGIRIVLELK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D + +   ++  + +E  + +NM  +  GR P+ M L  IL  +L  +   + ++ +
Sbjct: 310 KDADVNRIKAILYKKTKLEDTYGVNMLAIDEGR-PETMNLKQILNTFLEFQYRNMTKKYN 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMV--------------- 418
             +Q    + E+ +GL+ A   ID IIA++R     +D  + +M                
Sbjct: 369 VLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLMTGNTEKIKFRVPGFEA 428

Query: 419 --SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                  TE Q  AIL +RL  L  LE   ++      L +  +   +L++ K     I 
Sbjct: 429 DAKNLHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIREYKHILSNQKNMDVVIK 488

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            ++  +K  F++      RRT    +   ++    +A  E + +  V+   G+ +++   
Sbjct: 489 EDLDSIKAEFAEP-----RRTL---IEDGEEMVYVEAKEEAKEVIFVMDRFGYCKTMDRS 540

Query: 537 SVDLSALHFKEGDSLKI-ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
             + +    +  DS  +  L   T D++ + S  G  Y +       L  +  G  I+ +
Sbjct: 541 IYERNQ---ETVDSENVWVLPVMTDDKLCMFSDTGNMYQVKVAEFPTLKMKDKGIPIENV 597

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
              +   + +   +  S     K L  +++    IV   E I    K     K++ E+K+
Sbjct: 598 SKFDGKTETILFMLPASGFTGKKFLFATAQAAVKIVPGEEFIT-ANKTVVATKLAGEDKL 656

Query: 651 KLVVKVTGD-----HVAVVGENRKLLIFSIDQIPEM---SRG-KGVRLQ 690
             + ++  +      V +   +   L F +++IPE+   SRG +G+RL+
Sbjct: 657 TEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPELKKNSRGVRGIRLE 705


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  299 bits (766), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 189/584 (32%), Positives = 325/584 (55%), Gaps = 29/584 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +E N +  ++   L++ Y+ YA+S I  RAIP++ DGFKP HR++++ M  M L
Sbjct: 8   NSTQKYIETNKRTENIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNL 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR-YPLISGQGNFGNIDGDS 125
              A   KSA IVG+ + KL+PHGD ++Y+++V+L++      +P I  +GNFG      
Sbjct: 67  -LNANRTKSANIVGQTM-KLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRD 124

Query: 126 A--AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RYTEA++  + + +   ++++ VDF D Y+    EPV+ P+ FPN+L     GI
Sbjct: 125 MQFAAPRYTEAKLMPLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMA+SIPS N+ EIC   +A + +   +   + ++I+GPDFP+GG ++   E +   Y
Sbjct: 185 AVGMASSIPSFNLSEICNYTIAYLKDINCN---MFDFILGPDFPSGGELLFDEEEMKSIY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG F++R ++      +    I + EIPY      +IEKI +LI    +  + DIRD
Sbjct: 242 ETGRGSFKLRGKY---RYLKKEQLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+  +   +     ++ D + +M  IF  + +E  F  N NVL +   P+++ +  I+  
Sbjct: 299 ETDLNGLKITIDVRKNADVESMMGKIFKYTTLEDSFSCNFNVL-IDNKPKILGIKDIIFH 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           WL  RR+ + RR+   M+   +R+ +L+GL    L+ID+ IAIIRN +K     P +++ 
Sbjct: 358 WLNFRRQCIVRRTLNEMEDKSKRLFLLQGLEKIILDIDKAIAIIRNTEKEIDVLPNLMNA 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           F++ E Q + IL ++LR+L K  EY +K  SE+  L  E  K++ + +S K Q   I  E
Sbjct: 418 FAIEEKQAEYILEIKLRNLNK--EYILKKISEIKELEEEITKLEEIYHSQKLQDKLIISE 475

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++++ + + +      R+TT   VS+ D     ++   E   +T+ ++  G+++ +   S
Sbjct: 476 LKKIIKTYGQ-----ERKTTI--VSKKDVVVYSKENFTEDYAVTMFLTKDGYLKKIPELS 528

Query: 538 V-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +   S    K+ DS+   +  + TD  +LLST+   Y +   +L
Sbjct: 529 LRAYSEQKLKDNDSILQQIEMNNTDVFMLLSTNNVLYQVKVSDL 572


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 229/710 (32%), Positives = 371/710 (52%), Gaps = 74/710 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      +KSARIVG+ +GK
Sbjct: 14  MQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE + L
Sbjct: 74  YHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +   
Sbjct: 134 KDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDTVQ 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A IDNPE+  E+LL ++ GPDFPTGGII  +++ +   Y  G G  ++RA+  VE   R 
Sbjct: 193 AFIDNPELRTEELLGHLHGPDFPTGGIIA-NKKDLASIYETGSGKIKLRAKMEVELGKRK 251

Query: 265 S--WCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318
           +    +V+TEIPY +  +   + +  IAEL+ +K++  + DI ++S  E +RIVL  + +
Sbjct: 252 ADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRIVLELR-K 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D + +   ++  + +E  + +NM  +  GR P+ + L GILK +L  + E   R+   
Sbjct: 311 DADVEKIRNILYKKTKLEDTYGVNMLAIVKGR-PETLNLRGILKNYLDFQYENNTRKYRV 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVS---------------- 419
            ++    + EI +GL+ A   ID IIA++   RN    +  +++                
Sbjct: 370 LLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTSAIRFKTPELEED 429

Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L S K   +Q+  
Sbjct: 430 AGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKIL-SDKGTMDQVIK 488

Query: 478 E-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           E +  +K  F+       RRT    +    +A   ++ +E   +  V+   G+ R +   
Sbjct: 489 EDLAAIKREFACP-----RRTL---IEDGKEAVYDESAVEVREVVFVMDRFGYSRIVDRS 540

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591
           + D +    +  +   I      TDRI L +  G     K   +P G L   R  G  I 
Sbjct: 541 TYDRNRETIENENPHVIC--CLNTDRICLFTDAGVLHQVKVTDIPLGKL---RDKGTPID 595

Query: 592 LLIDLNHNQDIVTAFVYDSTC---KLLVVSSK--------GNAFIVEESEIIANT-RKGK 639
            L   +  ++  T FV +++    KL + +++        G  F      + A   ++G 
Sbjct: 596 NLCKFDGTKE-QTVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNRMVAATKLQEGD 654

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP-EMSRGKGVR 688
           + + V   ++   VV  T + V         L F++D+I  +    +GVR
Sbjct: 655 SLVSVQPADEASEVVLQTDNGV--------FLRFAMDEISVQKKNARGVR 696


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 294/476 (61%), Gaps = 5/476 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E++++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430
           +RS + ++    R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +A
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYDFSEKQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           I++L+L  L   + ++++S   +L  +   ++ +L    +    +  E+ E+K+ +
Sbjct: 423 IVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKILGDEAELVAVLKAELSEIKKKY 478


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/261 (53%), Positives = 187/261 (71%), Gaps = 1/261 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSAR+V
Sbjct: 11  VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI +P I+I+ L+ +I GPDFPT  +I   R+ I ++YR GRG   +RA+  +E
Sbjct: 191 INGCVALIQDPSITIDDLMTHIPGPDFPTAAMI-SGRKGIEDAYRTGRGKIYLRAKAEIE 249

Query: 260 EVGRGSWCIVVTEIPYQVQKS 280
               G   IVV EIPYQV K+
Sbjct: 250 TDANGKETIVVNEIPYQVNKA 270


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/430 (38%), Positives = 248/430 (57%), Gaps = 49/430 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ +     F+K AR+VGEV+GK
Sbjct: 149 LEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGPFRKCARVVGEVLGK 208

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGDQ+VYD+L RLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+  E  +L
Sbjct: 209 FHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRYTECRLTRFCEDALL 268

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +  V FR  ++  + EPVVFP+  P LL  G+SGIAVGM+T IP HN+ E+ +AA+
Sbjct: 269 KNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQIPPHNLHEVIDAAV 328

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV------ 258
           ALI +P +  E+LL+ + GPDFPTGG++V + E I  +Y+ G G   +R R  +      
Sbjct: 329 ALIRDPNLPDEELLKIVPGPDFPTGGLLVNA-EEIPSAYKEGHGRVLLRGRVHLEGEEGE 387

Query: 259 -----------------------------EEVGRGSWC----------IVVTEIPYQVQK 279
                                        E+ G+ S            +V+TE+PY V K
Sbjct: 388 EEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKERRLVITELPYGVNK 447

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           S +++ IA++I  K +  +  +RDES    +R+VL  + R  D   ++  +   ++++  
Sbjct: 448 STVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLR-READAHTILTLLLKHTNLQVY 506

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            P+N+  L  G  P    L  +L  W++ R + L R  +        R  +L+GLL A  
Sbjct: 507 IPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKARSHLLEGLLRAVN 566

Query: 399 NIDEIIAIIR 408
            +D+++  +R
Sbjct: 567 LMDQVVKTVR 576


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 214/704 (30%), Positives = 367/704 (52%), Gaps = 44/704 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           LVE+N+        LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 6   LVEQNITD-----TLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDSA--AA 128
             KS+ IVG+ + KL+PHGD ++Y+++VR+ +      +P I  +GNFG         AA
Sbjct: 60  -TKSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMKFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ ++ E I + +D++ VDF D Y+    EPV+ P+ FP++L N   GIAVGMA
Sbjct: 118 PRYTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++I S N++EIC+   ALID+  I IE   +Y+  PDF +GG ++ S + I + Y  GRG
Sbjct: 178 SNICSFNLEEICKTTSALIDDENIVIE---DYLQAPDFSSGGQLIYSAKEIRDIYNNGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+VRA++  +     + CI + EIPY      +I++I ELI   +I  + D+RDE+   
Sbjct: 235 SFKVRAKYNYD---NKNNCIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDLS 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     ++ DPD+LM+ +F L+ ++  F  N N+L  GR P+VM +  IL EWL+ R
Sbjct: 292 GLKLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILINGR-PRVMGVRTILNEWLSFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            + + R+  + +Q    ++ +L GL    L+ID+ I IIR  ++     P ++S F + +
Sbjct: 351 VDCIKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIRKTEQEVMVVPNLISGFDIDQ 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            Q + I  ++LR+L K  EY +    E D+L+ E  ++     + K+    I  ++ E+ 
Sbjct: 411 IQAEYIAEIKLRNLNK--EYILNRVGETDSLIKEIAELKDTHGNHKKVKKIIQKQLSEIA 468

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F K      RRT      + ++ T +   IE   + + ++ + +++ +   S+  +  
Sbjct: 469 KKFGKP-----RRTEIISDEQVEEITTEH-FIEDYNLKIFLTEQNYLKKIPLVSLRANPE 522

Query: 544 H-FKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           H  K+ D++   +  H    +LL +        K Y +P          GE +  L+ L+
Sbjct: 523 HKLKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYEIPD---CKASSLGEYLTNLLGLD 579

Query: 598 HNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            ++ I+     D+    +L     G    ++ S     T + K      +   +  +   
Sbjct: 580 SDEKIIYITATDNYEGYMLFFYENGKGAKIDLSGYATKTNRKKLANAYYNGSPLIRMFFA 639

Query: 657 TGD-HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGI 697
           T D  +  +    K+L+F+ + I        +GV++ + K G I
Sbjct: 640 TEDIELIAISSINKMLVFNTESIGVKTTKNSQGVQILTSKKGSI 683


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 195/643 (30%), Positives = 353/643 (54%), Gaps = 24/643 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG+
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L++YI GPDFPT G I++  + I 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPT-GGIIQGIDGIK 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VR++   E +  G   +++TEIPY+V KS L+++I EL   K++  + +
Sbjct: 180 KAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVE 239

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE+    +RI +  K + ++ + +   ++  SD++  +  NM  +S GR P++M +  
Sbjct: 240 VRDETDRTGLRIAIELK-KDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQ 297

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           I+  +L H+ EV+  R+ F +   ++R+ I++GL+ A   +D++I +IR   N+   K  
Sbjct: 298 IIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKEN 357

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  +  TE Q +AI+ L+L  L   +   ++ E   L A  +++  +L++     N I 
Sbjct: 358 LIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIK 417

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K+ F         R +  E    +    ++ M+  E + + ++  G+I+     
Sbjct: 418 EELNEIKKKFKS------ERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIR 471

Query: 537 SVDLSALH---FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQ 591
           S + S +     K+GDSL      +T D +L+ +  G+   +P   L   R    G+ + 
Sbjct: 472 SYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVS 531

Query: 592 LLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTFL--KVSSE 647
            ++ +  ++ ++  F   D       V +  N  I + +  +   TR  K  +  KV   
Sbjct: 532 QIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKEN 591

Query: 648 EKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMS-RGKGVR 688
           + +  V++   D +  +  N+ + L ++  ++ +   R  GV+
Sbjct: 592 DDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAAGVK 634


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 209/688 (30%), Positives = 354/688 (51%), Gaps = 33/688 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G    KSA +VG+ + 
Sbjct: 14  TLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGR-TKSANVVGQTM- 70

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSA--AAYRYTEARMTQVAE 141
           KL+PHGD ++Y+++VRL +      +P +  +GNFG         AA RYTE ++ ++ E
Sbjct: 71  KLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDMHFAAPRYTEVKLDKICE 130

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D+DAVDF D Y+    EP + P  FPN+L +   GIAVGMA++I S N+ E+CE
Sbjct: 131 ELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGMASNICSFNLNEVCE 190

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            A+  I+N  I +    +Y+  PDF +GG ++   + I E Y  GRG F+VR ++     
Sbjct: 191 TAIQFINNENIEVS---DYLKAPDFTSGGQLIYKEKDIKEIYNTGRGSFKVRGKY---RY 244

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            + + CI + EIPY      +I+ I EL+   +I  + D+RDE+  D   V     R+ D
Sbjct: 245 DKENNCIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDLDGLKVTIDIRRNTD 304

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD LM  ++ L+ +E  F  N N+L  GR P+V+ + GIL  W+  R + + R++ F + 
Sbjct: 305 PDALMNKLYKLTPLEDSFGCNFNLLINGR-PKVLGIKGILANWIEFRVDCIKRQTLFDIN 363

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
               R+ +L GL    L+ID+ I +IR  ++     P ++  F +   Q + I  ++LR+
Sbjct: 364 KKSDRLHLLVGLKKILLDIDKAIRLIRETEEDAMVIPNLMDGFGVDHVQAEFIAEIKLRN 423

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L K  EY +   SE+D L  E  ++  +  + K+    I  ++ EV + + K      RR
Sbjct: 424 LNK--EYILDKVSEIDKLEKEIAELKDIYGNDKKIKKIIVKQLGEVSKKYGKP-----RR 476

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
           T        ++ T Q+  IE   + + +++  +++ +   S+  S  H  K+ DS+   +
Sbjct: 477 TDILHEEHVEEIT-QEHFIEDYNLKIFLTDHNYLKKIPLTSLRTSPEHKLKDDDSIVQEI 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             H    +LL S     Y +    +   +    G+ +  L+ L  ++ I+     D    
Sbjct: 536 ETHNKADLLLFSNKQTVYKIRIYEIDDCKASSLGDYLTNLLGLEADERIINIVATDDYKG 595

Query: 614 LLVVS-SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLL 671
            ++ +   G    ++       T + K     S   K+  +  +T D   V   + +K+L
Sbjct: 596 YMIFAFENGKVAKIDLESYATKTNRKKLANAYSDLSKIIYMQYITEDEELVAFSSLKKVL 655

Query: 672 IFSIDQI-PEMSR-GKGVRLQSYKDGGI 697
           IFS   I P+ +R  +GV++   K G +
Sbjct: 656 IFSTSNINPKSTRDSQGVQVLKEKKGSV 683


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 145/350 (41%), Positives = 235/350 (67%), Gaps = 8/350 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   P
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKP 345


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 275/430 (63%), Gaps = 5/430 (1%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+KSA+ VG VIG  H
Sbjct: 3   DRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGNYH 62

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++ ++  +L+ +
Sbjct: 63  PHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLRDI 122

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP HN+ EI EA +  +
Sbjct: 123 EKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIKRL 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR++  +E++  G   
Sbjct: 183 DNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRKQ 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      +     +  + + ++ 
Sbjct: 242 ITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVLN 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ +RS + ++    R 
Sbjct: 302 YLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQ 360

Query: 388 EILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +AI++L+L  L   + 
Sbjct: 361 HILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDI 420

Query: 445 YQIKSELDNL 454
           ++++SE  +L
Sbjct: 421 HELQSEAKSL 430


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 269/449 (59%), Gaps = 22/449 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T++E+N+  V     + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L  
Sbjct: 13  TETIIEKNMVDV-----MSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYN 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             AF+KSA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA
Sbjct: 68  NQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G A
Sbjct: 128 MRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI NP IS+E+L + + GPDFPTGG+I    E I +++  G+G
Sbjct: 188 TEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVI-HGIEGIAQAFETGQG 246

Query: 249 GFRVRARW---CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              + +R+     E        I + E P+ V KS+L+  I  L+I K I  ++++RD+S
Sbjct: 247 KINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQS 306

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGR-VPQVMPLDGIL 361
             E   I L      L+ +   E+I  +++S  + R   N N++++    P++M L  +L
Sbjct: 307 NREGFSIYL-----ELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
             +L+H +++  +   F ++  + R+EI++G +      DE+I +I+N D  K  ++   
Sbjct: 362 FTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEAL 421

Query: 419 -SRFSLTENQVDAILNLRLRSLRKLEEYQ 446
              F  T  Q  AI  LRL  L K+++ +
Sbjct: 422 EKTFGFTNIQATAIAELRLYKLSKMDQLE 450


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 324/609 (53%), Gaps = 30/609 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I  S ++V E +        L++ Y+ YA+S I  RA+P++ DGFKP HR++++ M + G
Sbjct: 20  IEGSGSVVSEKIADT-----LKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRG 73

Query: 66  L-DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDG 123
           L        KSA +VGE + KL+PHGDQ++Y++LVR+ +      +P I  +GNFG    
Sbjct: 74  LLSPDKERSKSANVVGETM-KLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYS 132

Query: 124 DSA--AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
                AA RYTE ++ ++   + + +D++ VDF   Y+    EP + P+ FP +L N  +
Sbjct: 133 SKMHFAAPRYTEVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNT 192

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAV MA+++   N++E+CE  +AL+ +P   I   L  + GPDFP GG ++     + +
Sbjct: 193 GIAVSMASNVCPFNLEEVCETTIALMKDPNHDI---LSTLKGPDFPGGGFMLYDEAELNK 249

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG  +VR+++  +   + + C+ +TEIPY      +I+KI EL+ A +I  +  I
Sbjct: 250 VYETGRGSIKVRSKYSYD---KAANCLEITEIPYTTTVEAIIDKIIELVKAGKIREVSYI 306

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDE+  D   +     R+ DPD LM+ ++ L+ ++  +P N N+L  G  P+VM +  IL
Sbjct: 307 RDETDIDGLKIAIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILIAG-TPKVMGVREIL 365

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
            EW A R E + RR+   +     ++ +L+ L    L+ID+ I IIR   NE    P ++
Sbjct: 366 TEWTAFREECIQRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLM 425

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F + E Q + +  ++LR++ K    +   E+D L  + E+++ +L   K+    I  E
Sbjct: 426 IGFGIDEIQAEFVAEIKLRNINKQYILRRVEEVDQLKKDIEEMEDILRDKKKIRKIIINE 485

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +R+V + ++K      R+T F   S  ++        +  P+ + +S  G+ + +   S+
Sbjct: 486 LRDVIKNYAKP-----RKTMFYYQSDIEEEEEIDDTPDY-PVNLFVSKSGYFKKITPQSL 539

Query: 539 DLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLID 595
            +S+ H  KEGD +  +  A     ++  S   +AY   A      +    G+ +   + 
Sbjct: 540 RMSSEHKLKEGDYISQSFEATNKTDLIFFSDKAQAYKSKASAFDDTKASVMGDYVPAKLS 599

Query: 596 LNHNQDIVT 604
            + N+++VT
Sbjct: 600 FDENENLVT 608


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  293 bits (750), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 319/577 (55%), Gaps = 32/577 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I  + ++VE+ +        LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +MG
Sbjct: 33  IEGAGSVVEQEID-----HTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMG 86

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DG 123
           L   +   KSA IVG+ + KL+PHG+ ++YD++VRL++ +    +P +  +GNFG     
Sbjct: 87  L-LNSGRTKSANIVGQTM-KLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSR 144

Query: 124 DSA-AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           D A AA RYTEA++  +A+ + + +D+D VDF D Y+    EP + P+ FP +L N  +G
Sbjct: 145 DMAWAASRYTEAKLDAIAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTG 204

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA+SI   N++E+CE  + LI +P+  +   +  ++ PDFP GG I+  R ++ + 
Sbjct: 205 IAVGMASSICPFNLKEVCETTIGLIRDPDFDV---MSTLLAPDFPGGGQIICDRNALKQV 261

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRGG +VRAR+  ++    + CI VT IP       +IEKI EL+   ++  + DIR
Sbjct: 262 YATGRGGIKVRARYSYDQ---SANCIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIR 318

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  D   +     RS+DP+ LM  +F ++ +E  F  N NVL  G VP+V+ +  +L 
Sbjct: 319 DETGLDGLKITIDLKRSVDPEKLMLKLFRMTPLEDTFSCNFNVLIAG-VPRVLGIRELLG 377

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
           EW+A R E + RR+ F +Q    ++ +LKGL    L+ID+ + I+R    E +  P ++ 
Sbjct: 378 EWIAFRIECVRRRTYFDLQKKKDKLHLLKGLKRILLDIDKAVRIVRETEEESEVVPNLMI 437

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            F + E Q + +  ++LR L +  EY +K   E + L  E  ++ ++++S  +    I  
Sbjct: 438 GFGIDEIQAEFVAEIKLRHLNR--EYILKRTQETEQLETEIAELQAVMDSKSKVKGIIVS 495

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ +V + +      GR R +        +    +  I   P+T+  +  G+ + +   S
Sbjct: 496 ELNDVIKKY------GRPRKSMLVYPGEIQEYEPEDDIPDYPVTLFFTKEGYFKKITPQS 549

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +S     KE DS+   + A     +L  +   + Y
Sbjct: 550 LRMSGEQKLKEEDSIVQTVEATNNTELLFFTDRCQVY 586


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 313/558 (56%), Gaps = 35/558 (6%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           AF     +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA R
Sbjct: 394 AFVVDGLVVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASR 452

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+  A L++  +DED V+FR  Y+   +EP V P+ FPNLL NGTSGIAVGMAT+
Sbjct: 453 YTEARMSGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATN 512

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +  HN+ E+  AA  L+ +P+  +EKL+E+I GPD PTGG+++   + + ++Y  GRG  
Sbjct: 513 MIPHNLGEVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLL-GLDEVRKAYETGRGVV 571

Query: 251 RVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ES 305
           R+RA       E  RG   I VTE+PY V   ++IEKI  E+  +KR+  + D++D  + 
Sbjct: 572 RMRATVTTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDR 631

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              +R+V+  K   ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +L
Sbjct: 632 ENGIRLVIECKV-GVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQTLGLKALLEVFL 689

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AHR EV+ RR+ FR +  + R+ ++ GLL A ++ID++I +IR   N    K  +VS F+
Sbjct: 690 AHRYEVVTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFA 749

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q   IL+  LR L + +  +++ E + L  E  ++ ++L+  K     ++ E+ +V
Sbjct: 750 LSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKV 809

Query: 483 KEIFSKSTDLGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            +  S       RRTT       EV  A + T     +  +P  VV+S  G +    + S
Sbjct: 810 AKDLSA-----ERRTTLLDGDLKEVLAASR-TSGPLEVADDPCQVVLSATGLVARTAAES 863

Query: 538 VDLSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAY---TLPAGNLLSGRGH---- 586
            +      + G    D++   +H     ++LL+++ G+A+    LP   L  G G     
Sbjct: 864 EEAVEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLS 923

Query: 587 -GEAIQLLIDLNHNQDIV 603
            G  ++ L+ L   + +V
Sbjct: 924 GGVPVRELVGLEAGERVV 941



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
          SL   +E+ YL YA S I  RA+PD RDG KPVHRRI+ +M+E      + + KS+R+VG
Sbjct: 27 SLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVG 86

Query: 81 E 81
          +
Sbjct: 87 D 87


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  293 bits (750), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 210/681 (30%), Positives = 345/681 (50%), Gaps = 57/681 (8%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L   Y+ YA+S I  RAIP++ DGFKP HR+I++ M +MGL  GA   KSA +VG+ + 
Sbjct: 33  TLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGAR-TKSANVVGQTM- 89

Query: 85  KLHPHGDQSVYDSLVRLA---QPFVQRYPLISGQGNFGN-IDGDSA-AAYRYTEARMTQV 139
           +L+PHGD ++Y+++VRL+   +  +  Y  +  +GNFG     D A AA RYTE ++  +
Sbjct: 90  RLNPHGDMAIYETMVRLSRGNEALLHAY--VDSKGNFGKAYSRDMAFAASRYTEVKLDPI 147

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              + + +D+  VDF D Y+    EPV+ P+ FP++L N   GIAVGMA+SI   N+ E+
Sbjct: 148 CNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGMASSICPFNLTEV 207

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           CE  + L+ +P   +  LL+    PDFP GG+++   +++   Y  GRG  RVRAR+ ++
Sbjct: 208 CETTIRLMKDPAADLLPLLK---APDFPGGGLVLYDADTLRSVYETGRGSLRVRARYQLD 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           + GR    I +TEIP       ++++I EL+   ++  + DIRDE+      +     R 
Sbjct: 265 KAGR---FIEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDLSGLKLTIDLKRG 321

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D D LM  +F L+ +E  F  N NVL  GR PQV+ + G+L+ W A R + + RR  F 
Sbjct: 322 ADGDKLMSRLFRLTPLEDTFGCNFNVLVGGR-PQVLGVRGLLRAWTAFRMDCVRRRLRFD 380

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRL 436
           +     R+ +L+GL    L+ID+ + I+R  D+     P ++  F + E Q + +  ++L
Sbjct: 381 LGRAKDRLHLLRGLEKILLDIDKAVRIVRETDEESEVVPNLMIGFGIDEVQAEFVAEIKL 440

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R   +    +   E++ L  E   +++ L    +    IA E+R + + +      GR R
Sbjct: 441 RHFNRAYILEKTQEIEQLEREIADLEATLGEDARMLRLIADELRAIVKKY------GRPR 494

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
            +       ++    +  I   P+T+ ++  G+ + +   S+ +S     KE D+L   +
Sbjct: 495 RSLILYDVKEETAPDEEEIPAYPVTLFLTREGYFKKITPQSLRMSGEQKLKESDALVQTV 554

Query: 556 HAHT-------TDRILLLST------DGKAYTLPAGNLLSGR---GHGEAIQLLIDLNHN 599
            +         TDR  +  +      DGKA  L  G+ L  R     GEA++ +      
Sbjct: 555 ESTNGCELLFFTDRCQVYKSSVSEFEDGKASVL--GDYLPARLGFDEGEALRRM------ 606

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
              V A  YD    LL + + G A  VE +     TR+ K     S +E +  +  +T D
Sbjct: 607 ---VVAKQYDGW--LLFIYANGKAAKVELASYKTKTRRRKLVNAYSDKESLVAMFHLTED 661

Query: 660 -HVAVVGENRKLLIFSIDQIP 679
             V +     K+L+     +P
Sbjct: 662 REVVLTSSAGKMLLLDTGAVP 682


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  293 bits (749), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 215/686 (31%), Positives = 358/686 (52%), Gaps = 38/686 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  G A  KSA +VG+ + K
Sbjct: 35  LEINYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKL-LGGARTKSANVVGQTM-K 91

Query: 86  LHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGDSA-AAYRYTEARMTQVAEL 142
           L+PHGD ++YD++VRL++ +    +PL+  +GNFG +   D A AA RYTE R+  +   
Sbjct: 92  LNPHGDAAIYDTMVRLSRGYGALLHPLVDSKGNFGKVYSRDMAWAASRYTEVRLDGICAE 151

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           + + +D+D VDF D Y+    EP + P+ FPN+L +   GIAVGMA+++   N+ E+C+A
Sbjct: 152 LFRDIDQDTVDFVDNYDGTMQEPTLLPTTFPNVLVSANQGIAVGMASNLCGFNLAEVCDA 211

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +  + +P+  +  +L+    PDFPTGG ++     I + Y  GRG F+VRARW      
Sbjct: 212 TVEYLKHPDCDLTAVLK---APDFPTGGELLYDAAEIAQIYNTGRGSFKVRARW---RYL 265

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +    I + EIPY      +++K+AELI A ++  + D+RDE+      +     R  DP
Sbjct: 266 KSENLIEIYEIPYSTTVEAIMDKVAELIKAGKVKEIADMRDETDLTGLKLTIDLKRGTDP 325

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D LM+ +F  + +   F  N N+L  G +P+VM +  IL+EW A R E + RR+ F M+ 
Sbjct: 326 DKLMQKLFRATPLMDSFACNFNILIAG-MPRVMGVREILEEWTAWRMEGVRRRTYFVMKK 384

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSL 439
              ++ +LKGL    L+ID  I IIR  ++     P ++  F +   Q + + +++LR++
Sbjct: 385 KQEKLHLLKGLKKILLDIDRAIKIIRETEEDAEVVPNLMIGFGIDNIQAEYVADIKLRNI 444

Query: 440 RKLEEYQIK-----SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            K  EY +K     S L+  +A+ + I S  N G+ +   I  E+  VK+ +++      
Sbjct: 445 NK--EYILKRIEETSTLEEEIADLQDIVS--NPGRIK-KIIIAELGAVKKKYAQP----- 494

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKEGDSLKI 553
           RRT      +       +  I   P+T  +S  G+ + +   S+ + S   +KEGD   +
Sbjct: 495 RRTEIIYEHQRLSEPEPEEEIPDYPVTAFLSREGYFKKITPASLRMNSEQKYKEGDGAWL 554

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY-DS 610
                  D +L+ +   + Y     +    +    G+ +   +++   + +V A V  D 
Sbjct: 555 QWECTNRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLPTKLEMEAGESVVWACVPGDY 614

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +  LL     G A  VE S     TR+ K     S +  +   + +  D  +AV+    +
Sbjct: 615 SGNLLFFFRNGKAARVELSAYQTQTRRRKLTGAYSDKSPLAAALLLREDLELAVISTEGR 674

Query: 670 LLIFSIDQI-PEMSR-GKGVRLQSYK 693
            LIF    + P+ +R  +GV + + K
Sbjct: 675 CLIFHTALLAPKATRTTQGVNVMTLK 700


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/251 (56%), Positives = 183/251 (72%), Gaps = 2/251 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCI 268
            +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR  VE +   G   I
Sbjct: 181 EDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETI 239

Query: 269 VVTEIPYQVQK 279
           +V EIPYQV K
Sbjct: 240 IVHEIPYQVNK 250


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/282 (47%), Positives = 203/282 (71%), Gaps = 1/282 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDL 239

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           RDES  +   ++    R  + ++L+ +++  + ++T F +N+
Sbjct: 240 RDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINL 281


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 141/289 (48%), Positives = 205/289 (70%), Gaps = 1/289 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L  G
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDG 288


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/286 (48%), Positives = 204/286 (71%), Gaps = 1/286 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 233/793 (29%), Positives = 394/793 (49%), Gaps = 106/793 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM-GLDFGAA 71
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  + G D    
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLAGSD--KP 58

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RY
Sbjct: 59  HRKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRY 118

Query: 132 TEARMTQVAELILQGVDEDAVDFRD----TYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           TEAR+++  E +     +D   F+D     ++  ++EP   P + PN+L +G++GIAVGM
Sbjct: 119 TEARISKYTEDVCM---KDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGM 175

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G 
Sbjct: 176 ATNIPTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGL 235

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  +VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D  
Sbjct: 236 GKIKVRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRG 295

Query: 306 AEDVRIVLFP-KNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            ++   +    K  + D ++  ++  ++  + +E  F +N+N ++ G+ P+VM L  ILK
Sbjct: 296 DKNGECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGK-PEVMGLKKILK 354

Query: 363 EWLAHR--------REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
            +   +        R++L ++   R        EI  GLL A   ID II I+R   K  
Sbjct: 355 VYTDFKYGLYDTKYRKLLAQQEEIR--------EIKMGLLTAVDCIDLIIEILRGSTKVA 406

Query: 413 -PKPVMVS--------RF----------SLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             K  ++         RF            TE Q DAIL +RL+ L  LE   +K EL +
Sbjct: 407 DAKACLMHGDTSNVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELAD 466

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                +K   L+ S      Q+  ++ E+K  ++       RRT   ++       +++A
Sbjct: 467 AEKLIKKYTRLMESRDAMKQQMIDDMLEIKAKYAIP-----RRT---QIHNYGTVVVKKA 518

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +    + V++    +I+ + ++  + +     +    + A+     DRI + + + + Y
Sbjct: 519 EVVATDVAVLLDRFYYIKVVDANVYEKNIDQITK--DYRFAVKCQNLDRIAVFADNNQVY 576

Query: 574 TLPAGNLL--------SGRGHGEAIQLLID--------LNHN-------QDIVTAFVYDS 610
           T+   +++        S +G G  I  L D         N N        D +  FV D 
Sbjct: 577 TIKVADIIKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTD- 635

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRK 669
             KLL VS +G A +V+ S     TR+     KV  +  +  + K++ GD +    E   
Sbjct: 636 --KLLFVSKQGLAKVVDGSA-FDTTRRAANASKVGDD--IIYIGKISEGDFIIAQSEKGY 690

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            +     +IPE  +G  GVRL + +   + + +         ++ S   ++   +N+++ 
Sbjct: 691 YIRVDAAEIPEKGKGAAGVRLINLEGDDVLESV---------FVGSTKDTFKVGDNEIIF 741

Query: 729 WL---GKRGGVGS 738
                GKRGG GS
Sbjct: 742 TRVKPGKRGGKGS 754


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 297/541 (54%), Gaps = 24/541 (4%)

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
           SEP+V PS+ P LL NGT+GIAVGMAT+IP H++ E+C+A  ALI+N  ++++ L++++ 
Sbjct: 2   SEPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFVK 61

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPTGG I+ S+  + E Y  G+G  R+R  + +E+V +G   I++T IPY V KS L
Sbjct: 62  GPDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKSTL 121

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           + KI +L+  +++PLL D+RDES ++VRIVL  K R   P+L+M  ++  + ++T F +N
Sbjct: 122 VSKIGDLVRERKLPLLLDVRDESTKEVRIVLEFK-RDASPELVMAYLYKHTPLQTNFGVN 180

Query: 343 MNVLSMGRVPQV-----MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
           +  L     P+V     + L  IL+ +L  R EV+ +R    +  + +RV IL+G    Y
Sbjct: 181 LTCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVY 240

Query: 398 LNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             +DE+I IIR     +D  K +M +RF L E QVDAIL ++L  L +LE   I+ EL  
Sbjct: 241 DALDEMIRIIRASEGKQDAAKKLM-ARFKLDEVQVDAILEMKLYKLARLEILVIQEELKQ 299

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
              E ++I+ +L   ++ W  +  E+ E+K  ++      +RRT        +    + A
Sbjct: 300 KRLEVKRIEGILKDKRKLWGTVKDELAEIKATYND-----KRRTRIGGAGSEEVEFSEDA 354

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            I  E   VV++  GWI+ ++    D S    +EGD++   L       ++L S  G AY
Sbjct: 355 FIVDEDAHVVLTRDGWIKRVREVK-DPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAY 413

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVE-E 628
                ++ +  G+G+ +Q L   +  + IV A   DS      KL+ V+  G       E
Sbjct: 414 VTRFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPRPQKLVAVTKDGLGLRFPLE 473

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMS-RGKG 686
             +  +TR G+ + K    +++  V  V   D +AV+ E     +    ++ E++  GKG
Sbjct: 474 GHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAGPGKG 533

Query: 687 V 687
           V
Sbjct: 534 V 534


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 155/441 (35%), Positives = 266/441 (60%), Gaps = 12/441 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           KA+   FA+   +  YA   I++RA+PDLRDG KPV RRI++ M +MGL     +KKSAR
Sbjct: 11  KAIEEVFAVS--FSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA RYTE R++
Sbjct: 69  AVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
                +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+I  HN  
Sbjct: 129 LYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTN 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ ++    ID P   ++++L+ + GPDFPTGG +   + S+ + Y+ G+G F ++A++ 
Sbjct: 189 ELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEK-SLSDIYQAGKGKFIIQAKY- 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
             EV +    I +T+I Y+  K+ ++++I E+I   ++  +E + D S  + +RI++  K
Sbjct: 247 --EVNKNLNQIEITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHK 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  L  + +M  +F  + ++  F LN  V++  R P  + L   L  +L    E++  ++
Sbjct: 305 D-FLPAEKIMAFLFKHTQLQVNFNLNNTVIA-NRFPIQIGLLSYLDHFLKFCHELIINKA 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + ++   +R+EI+ GL+ A   ID+II +IR   ++   +  ++  F  T NQ +AI++
Sbjct: 363 KYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNL 454
           LRL  L   + +++  E + L
Sbjct: 423 LRLYQLTNTDIFELNQEQNEL 443


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 214/715 (29%), Positives = 364/715 (50%), Gaps = 38/715 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE+ Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  G+   KSA +VG+ + 
Sbjct: 15  TLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSR-TKSANVVGQTM- 71

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQR-YPLISGQGNFGNIDGDSA--AAYRYTEARMTQVAE 141
           KL+PHGD ++Y+++VRL +      +P +  +GNFG         AA RYTE ++ ++  
Sbjct: 72  KLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDMQFAASRYTEVKLDKICT 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D+D V F   Y+    EP + P+ FP++L N   GIAVGMA++I   N++E+C 
Sbjct: 132 ELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLREVCS 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A I NP+  IEK   YI GPDFP GG  +  RE + + +  GRG  R+RAR+ V+  
Sbjct: 192 ATIAYIKNPDCVIEK---YIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYRVDLK 248

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            R    I + EIPY      +++ +AEL+ A +   + D+RDE+  +   +     R+ +
Sbjct: 249 NR---LIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELKRAAE 305

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P+ LM  +F  + ++  F  N NVL  GR P+V+ +  ++ EWL  RR  + R ++F +Q
Sbjct: 306 PEALMNRLFKQTSLQANFACNFNVLIDGR-PRVLGVKQLIGEWLNFRRTCVRRETAFDLQ 364

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
               ++ +L+GL    L+ID+ I IIR   NE    P +   F++   Q + I  ++LR+
Sbjct: 365 EKQAKLHLLEGLNTIMLDIDKAIRIIRETENETDVIPNLCRGFAIDAVQAEYIAEIKLRN 424

Query: 439 LRKLEEYQIKSELD--NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K   D   L  E  ++ + L S      +I   +++V E + +      RR
Sbjct: 425 LNR--EYLLKRTADRSELTEEIAQLQNRLASTSLLDAEIIRTLQQVAEKYGQD-----RR 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIAL 555
           T   +     + T  + +IE   +   ++  G+++ L   S+  +  L  K+ D +   +
Sbjct: 478 TVLIDAGEITEIT-GEDLIEDYRLKYFLTAHGYLKKLPLTSLRSAGELKIKDEDEIISEI 536

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY-DSTC 612
            A   D I++ +     Y +    +   +    GE +  L+D    + ++   V  +   
Sbjct: 537 EAGNRDEIMVFTDQANVYKISGHEIKDCKPSELGEYLPGLLDFAPEEKVIYLHVPGEYVG 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLL 671
             +   + G    V  S     T++ K     S +  +  +     +   V+  N  K+L
Sbjct: 597 DFMFAFANGKVARVPVSAYKTKTKRRKLVAAYSDKSPLVGIEFAPENKSYVLISNLSKVL 656

Query: 672 IFSIDQIP-EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           IF  +QIP +++R  +GV++ S K   +  V  F   E     DS    Y R++N
Sbjct: 657 IFDSEQIPAKVTRNNQGVQVMSAKRNSV--VNKFSTPEAAGIQDS---PYYRTKN 706


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 222/695 (31%), Positives = 373/695 (53%), Gaps = 53/695 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      +KSARIVG+ +GK
Sbjct: 14  MQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYTEA++ +  E + L
Sbjct: 74  YHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYTEAKLAKFTEEVYL 133

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP+HN+ E+C   +
Sbjct: 134 KDLDK-TVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSIPTHNLLEVCNTCI 192

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A I N  I  + LLE + GPDFPTGGII  +++ + + Y  G G  ++R +  V E+GR 
Sbjct: 193 AYIKNRNIDTKGLLEILHGPDFPTGGIIA-NKKDLFDIYDTGNGKLKIRGKIEV-ELGRK 250

Query: 265 SW---CIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
                 ++++EIPY +  +   + +  +A L+ +K++  + DI ++S ++  RIVL  K 
Sbjct: 251 KSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSDKNGTRIVLELK- 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D + +   ++  + +E  F +NM  +  GR P+++ L  ILK +L  + E+  ++ +
Sbjct: 310 KDADIEKIKNILYKKTKLEDTFGVNMLAIVDGR-PEILSLRDILKNYLDFQYEITTKKYN 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS--------------- 419
             +     + EI +GL+ A   ID IIAI+R   N  + K  ++S               
Sbjct: 369 ILLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTTGINFKVKTFEK 428

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              + S TE Q  AIL++RL  L  LE   I++ L +  A  + I+   N  K   N   
Sbjct: 429 DAKKLSFTEKQAQAILDMRLYKLIGLE---IEALLKDNAATLKNIEDYENILKDHKNMDK 485

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             I+++++I     D   +R T  E   A +A   +  +  E +  V+   G+ +     
Sbjct: 486 LFIKDLEKI---KRDFALQRKTLIE--DAKEAIYIEEPLASEEVIFVMDKFGYCKVYDRG 540

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSG-RGHGEAIQLLI 594
           + D +A    E +++ +      TD++ + S  G  Y +   +L LS  R  G  I  L 
Sbjct: 541 TFDKNAQAV-ESENIYV-FPVMNTDKVCIFSNTGILYKIKVIDLPLSKLRDKGTPIDNLT 598

Query: 595 DLNHN-QDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--- 648
             + + ++I+ A   DS     +L+++ KG    V   E   N ++  +  K+++++   
Sbjct: 599 KFDSSTEEILLAVSEDSMRGNSILMLTKKGFIKKVSCEEFKTNNKQVAS-TKLTNDDVLI 657

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            +K++       + ++ +   +L F+I ++ E  +
Sbjct: 658 AVKMISSGINTDIFIISDAGYILRFNISEVNEFKK 692


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 185/246 (75%), Gaps = 1/246 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDES 305
           D+RDES
Sbjct: 240 DLRDES 245


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 232/793 (29%), Positives = 389/793 (49%), Gaps = 106/793 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM-GLDFGAA 71
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  + G D    
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLAGSD--KP 58

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RY
Sbjct: 59  HRKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRY 118

Query: 132 TEARMTQVAELILQGVDEDAVDFRD----TYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           TEAR+++  E +     +D   F+D     ++  ++EP   P + PN+L +G++GIAVGM
Sbjct: 119 TEARISKYTEDVCM---KDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGM 175

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G 
Sbjct: 176 ATNIPTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGL 235

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  +VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D  
Sbjct: 236 GKIKVRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRG 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFML---SDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            ++   +     +    + +   I +L   + +E  F +N+N ++ G+ P+VM L  ILK
Sbjct: 296 DKNGECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGK-PEVMGLKKILK 354

Query: 363 EWLAHR--------REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
            +   +        R++L ++   R        EI  GLL A   ID II I+R   K  
Sbjct: 355 VYTDFKYGLYDTKYRKLLAQQEEIR--------EIKMGLLTAVDCIDLIIEILRGSTKVA 406

Query: 413 -PKPVMVS--------RF----------SLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             K  ++         RF            TE Q DAIL +RL+ L  LE   +K EL +
Sbjct: 407 DAKACLMHGDTSNVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELSD 466

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                +K   L+ S      Q+  ++ E+K  ++       RRT   ++       +++A
Sbjct: 467 AEKLIKKYTRLMESRDAMKQQMIDDMLEIKAKYAIP-----RRT---QIHNYGTVVVKKA 518

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +    + V++    +I+ + ++  + +          + A+     DRI + + + + Y
Sbjct: 519 EVVATDVAVLLDRFYYIKVVDANVYEKNIEQINR--DYRFAVKCQNLDRIAVFADNNQVY 576

Query: 574 TLPAGNLL--------SGRGHGEAIQLLID--------LNHN-------QDIVTAFVYDS 610
           T+   +++        S +G G  I  L D         N N        D +  FV D 
Sbjct: 577 TIKVADIIKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTD- 635

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRK 669
             KLL VS +G A +V+ S     TR+     K   +  +  + K + GD +    E   
Sbjct: 636 --KLLFVSKQGLAKVVDGSA-FDTTRRAANASKAGDD--IIYIGKFSEGDFIIAQSEKGY 690

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            +   I +IPE  +G  GV+L + +   + + +         ++ S   ++   +N+++ 
Sbjct: 691 YIRVDISEIPEKGKGAAGVKLINLEGDDVLESV---------FVGSTRDTFKVGDNEIIF 741

Query: 729 WL---GKRGGVGS 738
                GKRGG GS
Sbjct: 742 TRVKPGKRGGKGS 754


>gi|332711871|ref|ZP_08431801.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
 gi|332349199|gb|EGJ28809.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
          Length = 753

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 202/633 (31%), Positives = 334/633 (52%), Gaps = 51/633 (8%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAV 152
           +Y+++VRL Q F  RYPL+ G GNFG++D D  AA RYTE R++ V A+ +L  + E  V
Sbjct: 1   MYEAMVRLVQDFSTRYPLLDGHGNFGSVDNDPPAAMRYTETRLSPVGAQALLSEIGEATV 60

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D ++    EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P +
Sbjct: 61  DFIDNFDSSQQEPVVLPAQLPVLLLNGCSGIAVGMATNIPPHNLAEIVDGLIALIDRPNL 120

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGRGS----W 266
             EKL E I GPDFPTGG IV + E I ++Y  GRG   +R    +E  +VGR       
Sbjct: 121 PDEKLWELIPGPDFPTGGEIVAA-EGIRDAYTTGRGSIPIRGITKLETIQVGRKKRGQRR 179

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLL 325
            IVV+E+PYQV K+  IEK+A L+   RI  + DIRDES  E +R+V+  K R   P  +
Sbjct: 180 AIVVSELPYQVHKAAWIEKVAALVNQGRIEGISDIRDESDREGMRVVVELK-RDAQPSAV 238

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++ ++  + ++T F   +  L  G+ P+ + L  +L+ +++ R + L R+ ++     +R
Sbjct: 239 LQQLYKQTPLQTNFGAILLTLVDGQ-PRQLTLRQLLESFISFREQTLTRQYTYEQSQKER 297

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ ++ GLL +   +D +I I+RN       K  + ++ +L+E Q DAIL + +R L  L
Sbjct: 298 RLHLVDGLLASLNQLDAMIDILRNAPDGTTAKLSLQNQLNLSEIQADAILAMPMRRLTGL 357

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E + L    E++  LLN  ++    +  ++R +K  +        RRT    +
Sbjct: 358 EREKLETEGEELSQRLEQLHQLLNDRRELLKALKKDLRSLKRKYGDP-----RRTIINSI 412

Query: 503 SRADKA----------------------TLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  +K                       TL  A  E E   +  ++ G+++   + +   
Sbjct: 413 ASTEKKLEQPTAAQPRSKKSAQPQKTPDTLPNAPTEPEQTLLEFTSHGYVQRQSATTQPK 472

Query: 541 SALHFKEGDSLKI-ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI---QLLIDL 596
                K+G+   + A    TT  +++++  GKAY +   ++    G  + I   +LL + 
Sbjct: 473 LPKSIKQGEDFVVQAQLLLTTQELMVITGSGKAYPVKIRDIPPAAGRKQGIPLVKLLPNS 532

Query: 597 NHNQDIVTAF-VYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ +V  F V D      L++++ +G    V  SE+   T +G    K  ++++++  
Sbjct: 533 AQSETVVAHFRVPDDLENFTLVLLTHQGKIKRVSVSELTKLTNRGMLLTKFRNDDQLQYA 592

Query: 654 -VKVTGDHVAVVGENRKLLIFSID--QIPEMSR 683
            +  T   V V   N +LL F ++  Q+P M R
Sbjct: 593 NLSTTATQVVVATSNGRLLRFEVNDKQLPIMGR 625


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/259 (54%), Positives = 185/259 (71%), Gaps = 2/259 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  II   R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIP 274
            VE +   G   I+V EIP
Sbjct: 247 EVEADAKTGRETIIVHEIP 265


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 184/566 (32%), Positives = 304/566 (53%), Gaps = 29/566 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  Y+ YA+S I  RA+P++ DGFKP HR++++ MS+MGL       KSA IVG  + 
Sbjct: 16  TLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGL-LTKGRSKSANIVGTTM- 72

Query: 85  KLHPHGDQSVYDSLVRLA---QPFVQRYPLISGQGNFGNI---DGDSAAAYRYTEARMTQ 138
           KL+PHGDQ++Y+++V++    Q  +  Y  +  +GNFG +   D   A+A RYTEA++ +
Sbjct: 73  KLNPHGDQAIYETMVKMTRGHQGLLHAY--VDSKGNFGKVYSRDMREASA-RYTEAKLEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             + I   +D++ VDF D Y+    EP + P+ FPN+L     GIAVGMA  IPS N++E
Sbjct: 130 FTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHIPSFNLKE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +CEA +A + + EI    LLEY+  PDF TGG ++ +  ++ + Y  GRG F+VR ++  
Sbjct: 190 VCEATIAYLKDKEID---LLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFKVRGKY-- 244

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
               +    I + EIPY      +IE I EL+   +I  + DIRDE+ ++   +     R
Sbjct: 245 -RYVKADNAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKITIDLKR 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            ++PD LM   F  + +E  F  N N+L  G  P+VM +  IL  W+A R   L R+  F
Sbjct: 304 GVNPDDLMVKFFKWTKLEDSFGCNFNILINGH-PKVMGVKEILDHWIAFRLSCLKRQVQF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            +  ++ ++ +LKGL    LNI E++ +I+N  K K V   ++ +F L   Q + I  ++
Sbjct: 363 EIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQAEYIAEIK 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSL +    +   E+  +  E +++  +L    +Q   I  +++ + E +        R
Sbjct: 423 LRSLNQELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIP-----R 477

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIA 554
           +T     +  +  + ++ +IE   + + ++N G+I+ +   S+  S  H  K+ D +   
Sbjct: 478 KTDIINENEVEVLS-EEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLKDNDYIVQE 536

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL 580
           +       +LL S     Y + A  L
Sbjct: 537 IDGTNRGEVLLFSNKETVYKIKAYEL 562


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 201/280 (71%), Gaps = 1/280 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL 
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R 
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRS 179

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  
Sbjct: 180 GIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEG 239

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
           + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 ITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 279


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 300/557 (53%), Gaps = 26/557 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA   KSA IVG  +  
Sbjct: 37  LETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGSTM-H 93

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGN-IDGDSA-AAYRYTEARMTQVAEL 142
           L+PHGD ++YD++VR+ +       P +  +GNFG     D A AA RYTEA++  V E 
Sbjct: 94  LNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRDMAYAAARYTEAKLEPVCEE 153

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           + + +D+D VDF   Y+   +EP + P  FP +LAN T GIAVGMA++I S N++E+C A
Sbjct: 154 LFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMASNICSFNLEELCNA 213

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+ + +  ++   E I  PDF  GG I+     +      GRG  RVRA+W  ++  
Sbjct: 214 TIALMKDAKADLK---EIIPAPDFVGGGTILYDAAEMKNVLENGRGSVRVRAQWSYDKTN 270

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
               CI VT IP       +++KI EL+   +I  + D+RDE+  +   +     R  DP
Sbjct: 271 N---CIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMRDETDLNGLKLTIDLKRGQDP 327

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D LM  +F  + +E  F  N NVL  G+ P+V+ +  IL EW+A R E + RR+ + +Q 
Sbjct: 328 DKLMARLFKATPLEDSFACNFNVLIAGQ-PKVLGVRDILLEWIAFRAECVRRRTYYDLQG 386

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +R+ +L+GL    L+ID+ I I+RN   E +  P ++  F + E Q + +  ++LR L
Sbjct: 387 KQKRLHLLQGLKAILLDIDKAIEIVRNTAEEAEVVPNLMIGFGIDEVQAEYVAEIKLRHL 446

Query: 440 RKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            +  EY +K  +E++ L +  E +  +L    +    I  E+ +V + + K     RR  
Sbjct: 447 NR--EYILKRTAEIEELESAIEDLQDVLKRPARINKIIMNELSDVAKKYGKP----RRCE 500

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIALH 556
              EV  A +A   +  I   P+ +  +  G+ + +   S+ +S     K+GD +     
Sbjct: 501 ILYEVP-ASEAEEPEQQIPDYPVHLFFTRDGYFKKITPQSLRMSGEQKLKDGDEVLFTCE 559

Query: 557 AHTTDRILLLSTDGKAY 573
           +  +  +L  +   + Y
Sbjct: 560 STNSVELLFFTNHHQVY 576


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 298/521 (57%), Gaps = 31/521 (5%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F     +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RY
Sbjct: 82  FATEGFVVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRY 140

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+  A L++  + ED VDFR  Y+    EP V P+ +PNLL NGTSGIAVGMAT++
Sbjct: 141 TEARMSNEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTSGIAVGMATNM 200

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  AA  LI++P  +++KL+EY+ GPD PTGG ++   + + ++Y  GRG  R
Sbjct: 201 IPHNLGEVIGAARWLINHPNATLDKLMEYVPGPDLPTGGSLL-GLDEVRKAYETGRGVVR 259

Query: 252 VRARWCVE----EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--E 304
           +RA   VE    E  RG   I VTE+PY V   ++IEKI  E+  +KR+  + D++D  +
Sbjct: 260 MRAN--VETGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTD 317

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                R+V+  K   ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +
Sbjct: 318 RENGTRLVIECK-VGVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQTLGLKALLEVF 375

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L HR EV+ RR+ +R +  + R+ ++ GLLIA LNID++I +IR   N    K  ++++F
Sbjct: 376 LKHRYEVVTRRTRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKDGLMTKF 435

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L K +  ++++E D L AE  ++ ++L         ++ E+ +
Sbjct: 436 KLSEIQATYILDTPLRRLTKYDRLELENEQDKLRAEIAELTTILEDESVLKKLVSTELAK 495

Query: 482 VKEIFSKSTDLGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           + + F        RRT        EV  A K +     +  +P  V++S  G +    + 
Sbjct: 496 IAKDFPTE-----RRTRLIDGDLKEVLAASKPS-GPLEVADDPCQVILSATGLVARTAAE 549

Query: 537 SVDLSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAY 573
           S + S +  + G    D++   +H     ++LL+++ G+A+
Sbjct: 550 SEEASEVRRRNGRVKHDAVSAVVHTTARGQVLLVTSRGRAF 590


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 194/629 (30%), Positives = 325/629 (51%), Gaps = 31/629 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            + E Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL       KSA IVG  + 
Sbjct: 35  TIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGL-LNGGRTKSANIVGATM- 91

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGDSA-AAYRYTEARMTQVAE 141
           KL+PHGD ++YD++VRL++ +    +P +  +GNFG     D A AA RYTEA++  +  
Sbjct: 92  KLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSRDMAWAASRYTEAKLDAICN 151

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D+D VDF D Y+    EP + P  FP++L N  +GIAVGMA++I S N++EICE
Sbjct: 152 ELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASNICSFNLREICE 211

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              ALI +P+  I+  L     PDF  G  I+     I + Y  GRG  ++RA++  +  
Sbjct: 212 TTAALIRDPDHDIKSTLP---APDFTGGCQIIYDENVINQVYETGRGSIKLRAKYVYD-- 266

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            + + CI +  IP       +IEK+ +L+   ++  + DIRDE+  D   +     R +D
Sbjct: 267 -KSANCIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGLKITIDLKRGVD 325

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D LM  ++  + +E  +  N NVL  G VP+V+ +  +L+EW+A R E + RR+ F   
Sbjct: 326 ADKLMTKLYRFTTLEDSYACNFNVLIAG-VPRVLGVKALLEEWIAFRIECVRRRTYFDRN 384

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
               ++ +L+GL    L+ID+ + I+R  D+     P ++  F + E Q + +  ++LR 
Sbjct: 385 KKADKLHLLRGLEKILLDIDKAVKIVRETDEESEVVPNLMIGFGIDEIQAEYVAEIKLRH 444

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K   +L++L  E  ++D +L S  +    I   ++E+K I  K     +  
Sbjct: 445 LNR--EYILKRTKDLEDLEKEIAELDEILKSKARIKTII---VKELKSIAEKYGQPRKSI 499

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
             + +V+R ++ T++   I   P+ +  +  G+ + +   S+ +S     K+GD +   L
Sbjct: 500 IIYDDVARYEEETVE---IPDYPVNLFFTKEGYFKKITPQSLRMSGEQKLKDGDEIIQEL 556

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY-DSTC 612
                  +L  +   + Y   A +    +    G+ +   +  +  ++ V   V  D   
Sbjct: 557 EFTNNCDLLFFTDKCQVYKAKADDFAQTKASVLGDYVAAKLGFDEGENAVKMVVTKDYKG 616

Query: 613 KLLVVSSKGNAFIVE-ESEIIANTRKGKT 640
            LL     G A  V  ES      RK  T
Sbjct: 617 MLLFAFENGKAAKVPLESYATKTNRKKLT 645


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/244 (54%), Positives = 183/244 (75%), Gaps = 1/244 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDES 305
           RDES
Sbjct: 240 RDES 243


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 IRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 188/588 (31%), Positives = 313/588 (53%), Gaps = 31/588 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N+ +++E+ + +      LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M  MG
Sbjct: 23  ILNAGSVLEDPITST-----LETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMG 76

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGD 124
           L  GA   KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG     
Sbjct: 77  LLKGAR-TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSR 134

Query: 125 --SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T G
Sbjct: 135 DMSCAAARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA +I S N+ E+C   +AL+ +P+  I   +     PDF  GG I+     + E 
Sbjct: 195 IAVGMACNICSFNLAELCATTVALMKDPKHDISTTMP---APDFVGGGQILYDEAQMREV 251

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRAR+    V  G   + +T+IP       +++KIAEL+ A +I  + D+R
Sbjct: 252 YENGRGSIKVRARY---NVVPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMR 308

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   +     R +DP+ LM  ++  + +E  F  N NVL  G+ P+VM +  IL+
Sbjct: 309 DETDLNGLKLTLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQ-PRVMGVREILQ 367

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419
           EW A R E + RR+ + +   ++R+ +LKGL    L+ID+ I IIR    E +  P ++ 
Sbjct: 368 EWTAFRMECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMI 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            F + E Q D +  ++LR L +  EY +K   E++ L  +   ++ +L    +    I  
Sbjct: 428 GFGIDEVQADYVAEIKLRHLNR--EYILKRTGEIEQLEKDIADLNDILAKPARIRRIIIN 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ +V + +++      RR+        +++  ++ +I   P+TV  +  G+++ +   S
Sbjct: 486 ELNDVAKKYAQP-----RRSEILYDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQS 540

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +  +  H  KEGD +   +        L  +   + Y +    L  G+
Sbjct: 541 LRTAGAHKLKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLNELEDGK 588


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 176/234 (75%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  ++ 
Sbjct: 66  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 186 YIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 194/666 (29%), Positives = 345/666 (51%), Gaps = 68/666 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM-GLDFGAA 71
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI+++++ + G D    
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLAGSD--KP 58

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG++DG  AAA RY
Sbjct: 59  HRKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRY 118

Query: 132 TEARMTQVAELILQGVDEDAVDFRD----TYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           TEAR+++  E +     +D   F+D     ++  ++EP   P + PN+L +G++GIAVGM
Sbjct: 119 TEARISKYTEDVCM---KDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGM 175

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN+ E+ +A +  +++PE+ +E LL+ + GPDF TGGII  S+E +++ Y  G 
Sbjct: 176 ATNIPTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGL 235

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  +VR +  + ++G G   I VTEIP+ +    ++ ++ +AEL   + +P + DI D  
Sbjct: 236 GRIKVRGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRG 295

Query: 306 AEDVRIVLFP-KNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            ++   +    K  + D ++  ++  ++  + +E  F +N+N +  G+ P+VM L  IL 
Sbjct: 296 DKNGECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGK-PEVMGLRRILS 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +   +  +   + +  ++      EI  GLL A   ID II I+R   K    K  ++ 
Sbjct: 355 IYTDFKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMH 414

Query: 420 --------RF----------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                   RF            TE Q DAIL +RL+ L  LE   +K EL++     +K 
Sbjct: 415 GDTSNITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKY 474

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL S      Q+  ++ E+KE ++       R+T    ++   +  +++A   +  + 
Sbjct: 475 SKLLESKSNMKKQMIADMLEIKEKYAIP-----RKTV---IADCGEVVVKKAQAVETEVA 526

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++    +I+ + ++  D +     +    + +     T+R+ + + + + Y +   +++
Sbjct: 527 VLLDRFYYIKVVDANLYDKNKAQIDK--DYRFSFKCKNTERVGVFADNNQMYMIKVADII 584

Query: 582 ----------SGRGHG-------EAIQL--LIDLNHNQDIVTAFVYDSTC--KLLVVSSK 620
                      G G G       + IQ+    ++N N++I+     +      LL V+  
Sbjct: 585 KLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKH 644

Query: 621 GNAFIV 626
           G A +V
Sbjct: 645 GQAKLV 650


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 176/234 (75%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  ++ 
Sbjct: 66  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ++N +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 186 YVENEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 203/704 (28%), Positives = 351/704 (49%), Gaps = 40/704 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L E Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA IVG+ + 
Sbjct: 35  TLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSANIVGQTM- 91

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGD--SAAAYRYTEARMTQVAE 141
           KL+PHGD ++Y+++VRLA+      +P +  +GNFG       S AA RYTEA++  +  
Sbjct: 92  KLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDMSFAASRYTEAKLDPICA 151

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            I   +D D VDF   Y+   +EPV+ P++FP +L N   GIAV MA++I S N+ E+CE
Sbjct: 152 EIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNICSFNLSEVCE 211

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            A AL+ N E  I   L+   GPDFP GG I++    +   Y  GRG  +VR+++  ++ 
Sbjct: 212 TAAALMKNLEHDIVSTLK---GPDFPGGGFILQDENELRRIYATGRGSVKVRSKYIYDKT 268

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                CI VTEIP       +I+KI E +   ++  + D+RDES      +     R  D
Sbjct: 269 AN---CIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKITIDLKRGQD 325

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + +M+ +F ++ ++  F  N N+L +G +P+VM +  IL++W   R   + R++ F + 
Sbjct: 326 SEAVMKKLFRITPLQDVFSCNFNIL-VGGMPKVMGVAEILEQWTDFRITCVKRKTKFELA 384

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPK--PVMVSRFSLTENQVDAILNLRLRS 438
               ++ +L GL    L+ID+ I IIR  ED  +  P ++  F + E Q + + +++LR+
Sbjct: 385 RKKEKLHLLTGLKKILLDIDKAIKIIRETEDDAEVVPNLMIGFGIDETQAEYVADIKLRN 444

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           + K    +   E+D+L  E   ++ +L+S ++    I  E+ ++ + +      G+ R T
Sbjct: 445 INKGYILKRIEEIDSLKEEIADMEDILSSERRVKQIIISELGDIAKKY------GKPRKT 498

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHA 557
                  D+    +  I   P+ +  +  G+ + +   S+ +S     KE D +      
Sbjct: 499 MFIYGTEDEENEAEEEIPDYPVNLFFTREGYFKKITPQSLRMSGEQKLKENDEIIETYDG 558

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY-DSTCKL 614
                +L  +   + Y   A +   G+    G+ + + ++L+ ++ I+      D +  L
Sbjct: 559 SNRAELLFFTDKFQVYKARACDFEDGKASVMGDYLPVKLELDPDERIIKMIAAEDYSGTL 618

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
           ++    G    V  +     TR+ K     +    +  +  + GD    +  E  K++IF
Sbjct: 619 VMFFENGKCAKVPMASFETKTRRKKLANAYNDGSPLVSMTLIDGDCEFMLSSEAGKVMIF 678

Query: 674 SI-------------DQIPEMSRGKGVRLQSYKDGGISDVICFK 704
           +               Q+  ++R K      YKDG I D   ++
Sbjct: 679 NTVLILPKAARDTQGVQVMRLTRAKLRSAVKYKDGMIKDADSYR 722


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 245

Query: 311 IVL 313
           +V+
Sbjct: 246 VVI 248


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 206/612 (33%), Positives = 339/612 (55%), Gaps = 39/612 (6%)

Query: 30   YLAYALSTI-KERAIPDLRDGFK-----PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
            Y+A  L+   +E   P++ D  +     P  R+ +   +        A   + R++   I
Sbjct: 541  YVARLLAEFGREHLTPEIYDAQRNANWIPSFRKAVAYFTGFDEMLAVAATHNHRVIN--I 598

Query: 84   GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             +L  H D  VYD  V     F+    L +G     +IDGD AAA RYTEAR++ +AE +
Sbjct: 599  QRLAEHVD--VYDITVNEHHNFM----LENGCIVHNSIDGDPAAAMRYTEARLSTIAEEL 652

Query: 144  LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
            L  +D++ VDFRD ++    EP V P   PNLL NG +GIAVGMAT+IP HN++E+C+A 
Sbjct: 653  LFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNGAAGIAVGMATNIPPHNLKELCDAI 712

Query: 204  LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            + LIDNPE+++E+L++ I GPDFPT G I+ + E I+ +Y  GRG   +RA+  +EE  R
Sbjct: 713  IYLIDNPEVTVEELIKIIPGPDFPTAGNILGT-EGILAAYGTGRGQITLRAKAHIEEANR 771

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDP 322
            G++ IVVTE+PYQV K+RL E+IAEL   K+I  + D+RDES    +R+V+  K +   P
Sbjct: 772  GAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIRDVRDESDRAGMRLVILLK-QDAQP 830

Query: 323  DLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              ++ +++  + M+T F +NM  L   GR P+V+ L  +L+E++AHR+EV+ RR+ + ++
Sbjct: 831  KRVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLKRMLQEYVAHRQEVIRRRTEYDLE 890

Query: 382  AIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRS 438
                R  IL+GL IA  NID II  IR     +  +  ++S FSL+E Q  AIL+++LR 
Sbjct: 891  KARARAHILEGLKIALDNIDAIIRTIRESRSVEIARNNLISNFSLSEIQAQAILDMQLRR 950

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            L  LE  +I+ E   ++    +++ +L + ++    I  +++ +KE +        RRT 
Sbjct: 951  LAALERKKIEDEYAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDE-----RRTR 1005

Query: 499  FCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDS 550
               +  A      + +I    + + +++RG++        R+ +     + A+  +E D 
Sbjct: 1006 I--IPDASGEVSDEDLIPDVRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDL 1063

Query: 551  LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVTAF-V 607
            ++  L   + D +L  +  GK Y L A  +       + + L  LI L+  + + +   V
Sbjct: 1064 VRHLLTCGSHDNLLFFTDKGKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAV 1123

Query: 608  YDSTCKLLVVSS 619
             D   + LV+++
Sbjct: 1124 PDYDGEYLVMAT 1135



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 81/109 (74%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG     A+KKSA
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           RIVG+V+GK+HPHGD SVYD+L RLAQP+  RYPLI GQGNFG   GD+
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGDT 114


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/243 (55%), Positives = 183/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 IRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 245

Query: 311 IVL 313
           +V+
Sbjct: 246 VVI 248


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 175/234 (74%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 186 YIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 133/246 (54%), Positives = 184/246 (74%), Gaps = 1/246 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDES 305
           D+RDES
Sbjct: 240 DLRDES 245


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/395 (36%), Positives = 251/395 (63%), Gaps = 2/395 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +D P  + E++++ + GPDFPT G I++  + I ++Y  G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPT-GGIIQGIDGIRKAYETGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      + 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + + ++  +F  +D++  +  NM  +   R P++M +  +L  ++ H++E++ 
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKR-PELMGIIPMLDAYIEHQKEIIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +RS   ++    R  IL+GL+ A   +DE+I +IR
Sbjct: 363 KRSEHDIRKARARQHILEGLIKALSILDEVIKLIR 397


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/243 (54%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/360 (43%), Positives = 224/360 (62%), Gaps = 8/360 (2%)

Query: 20  VSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           V L  + E R  +L YA S I  RA+PD RDG KPV RRI+  M  MGL       KS+R
Sbjct: 18  VDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSSR 77

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  AA RYTEAR+ 
Sbjct: 78  VVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARLA 136

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             A  +   +DED VDF   Y+   +EP V P+ FPNLL NG +GIAVGMAT++P HN+ 
Sbjct: 137 ASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNLV 196

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I E+YR GRG F  RA   
Sbjct: 197 EVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIREAYRTGRGKFLTRATAH 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFP 315
           VE V      IVVTE+PY V   ++I +I E + +K++  + D+ D  +     R+V+  
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTDRKHGTRLVISV 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           KN   +P+ ++  ++  + +E  F +N NV  +   P  + L  +L+ ++ HR  V+ RR
Sbjct: 316 KN-GYNPEAVLAQLYKHTPLEDSFGIN-NVSLVDGQPHTLGLRELLEVFVRHRLTVVTRR 373


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 173/234 (73%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG+VIGK
Sbjct: 5   LKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGDVIGK 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L 
Sbjct: 65  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAHELLA 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 125 DLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVNGCLA 184

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ID+  ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 185 YIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYLRARAEVE 237


>gi|332273091|gb|AEE39229.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273093|gb|AEE39230.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273095|gb|AEE39231.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273101|gb|AEE39234.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273107|gb|AEE39237.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273123|gb|AEE39245.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273125|gb|AEE39246.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273127|gb|AEE39247.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273129|gb|AEE39248.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273131|gb|AEE39249.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273133|gb|AEE39250.1| DNA gyrase subunit A [Aeromonas jandaei]
          Length = 235

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/250 (52%), Positives = 182/250 (72%), Gaps = 1/250 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR 
Sbjct: 187 HLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245

Query: 255 RWCVEEVGRG 264
           R  +EE   G
Sbjct: 246 RVDIEEKKNG 255


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/250 (54%), Positives = 186/250 (74%), Gaps = 2/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +++   G   IVVTEIPYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAED-VRIVL 313
           S    +RIV+
Sbjct: 240 SDRTGMRIVI 249


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/328 (40%), Positives = 221/328 (67%), Gaps = 1/328 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLN 342
              + ++ + ++  +F  ++++  +  N
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 175/234 (74%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I++ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 186 YIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARAEVE 238


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/244 (54%), Positives = 183/244 (75%), Gaps = 1/244 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDES 305
           RDES
Sbjct: 240 RDES 243


>gi|332273109|gb|AEE39238.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273111|gb|AEE39239.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273113|gb|AEE39240.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273121|gb|AEE39244.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 235

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273135|gb|AEE39251.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273137|gb|AEE39252.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273139|gb|AEE39253.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273141|gb|AEE39254.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
          Length = 235

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 205/300 (68%), Gaps = 7/300 (2%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++AM+++G+     +KKSARIVGEVIGK HP GD +VY+S VR+AQ F   Y L+ G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG +DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+ 
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQIL- 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 180 GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 239

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML------SDMETRFPLNMNVLSM 348
           I  + D+RDES      ++    R  + ++++ +++        S++     ++M  LSM
Sbjct: 240 IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAHSGHSEVTIVLSMHMTTLSM 299


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 258/385 (67%), Gaps = 7/385 (1%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   Y+ YA++ I  RA+PD+ DG KPVHRRI++ M ++  ++   F K ARIVGEV+GK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  +Y LI GQGNFG+IDGD+AAA RYTE ++ +++     
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F + Y+ ++ EP+V P + PNLL NG+ GIAVGM+T+IP HN  +    A+ 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+   E  I+ L++ +  PDFPTGG I++  + +  +Y  G+G   + +++  E++ + +
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIKISK-LHNAYYYGKGSVTINSKFIFEKINKKT 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDL 324
             I++TEIPYQ+ K +++E+I +LI  K+I  + +++DES +  +RIV+  K ++L+ + 
Sbjct: 240 -NIIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELK-KNLNKNK 297

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +F  + ++    +N+N++++ + +P+ + L  IL  ++ +R++++ ++  F ++ +
Sbjct: 298 ILKILFKKTSLQ--HTININIIALIKNIPKKLNLKKILIYFIKYRKKLIIKKLKFILKKL 355

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR 408
            ++  +L+G ++   NI++ I I++
Sbjct: 356 KKKKYLLEGFVVVINNINKFIKIVK 380


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 273/458 (59%), Gaps = 22/458 (4%)

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GR
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGR 119

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES  
Sbjct: 120 GSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDR 179

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R +   +++ ++F ++ ++T F +NM  L +   P+V+ L  IL  +L H
Sbjct: 180 SGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEH 238

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           ++ V+ RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L+
Sbjct: 239 QKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLS 298

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K 
Sbjct: 299 DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 358

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKS 535
            ++      +RRT   E+   D  +L+ + +I +E + + ++ RG+I        RS + 
Sbjct: 359 KYAD-----KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRR 410

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
               +  +   E D ++  +   T D +L  +  GK Y
Sbjct: 411 GGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 448


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 181/241 (75%), Gaps = 1/241 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 S 305
           S
Sbjct: 240 S 240


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/250 (54%), Positives = 186/250 (74%), Gaps = 2/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAED-VRIVL 313
           S    +RIV+
Sbjct: 240 SDRTGMRIVI 249


>gi|332273097|gb|AEE39232.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273099|gb|AEE39233.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273103|gb|AEE39235.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273105|gb|AEE39236.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/243 (53%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/243 (53%), Positives = 184/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|332273079|gb|AEE39223.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273081|gb|AEE39224.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273083|gb|AEE39225.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273085|gb|AEE39226.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273087|gb|AEE39227.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273115|gb|AEE39241.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273117|gb|AEE39242.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273119|gb|AEE39243.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273147|gb|AEE39257.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD+
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDR 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I++L+EYI GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDELMEYIPGPDFPTGGII-NGRSGILQAYRTGRGSIYVRAKADVE 226


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 198/621 (31%), Positives = 328/621 (52%), Gaps = 39/621 (6%)

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           +RLAQP+  RYPL+ G GNFG+   D  AA RYTE+R+  +A  +L+ +D+D VDF   Y
Sbjct: 1   MRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNY 60

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS----I 214
           +    EP + PS+FPNLL NG  GIAVGMAT+IP HN++E+ +     + +P+ S    +
Sbjct: 61  DGRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELL 120

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           E LLE I GPDFPT G+IV  R+ I ++YR GRG  R+RA   VEE  +G   +VVTE+P
Sbjct: 121 EALLELIKGPDFPTAGLIV-GRQGIEDAYRTGRGSIRMRAVVQVEE-NKGRTQLVVTELP 178

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           YQV    L EKIAEL+   RI  + DIRDE SA   + ++    R     +++ +++  +
Sbjct: 179 YQVNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHT 238

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++  F +NM  +  G VP+ + LD +++ ++ H+ +V+ RR+ ++++    R+ +L+GL
Sbjct: 239 QLQDTFGVNMLAIVDG-VPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGL 297

Query: 394 LIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           LIA  ++DE+I +IRN    D  +  ++ RFSL+E Q  AIL+++LR L  LE  +I  E
Sbjct: 298 LIALDHLDEVINLIRNAESADAARGQLMDRFSLSEIQAVAILDMQLRRLAALERQKIIDE 357

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L A+  +++++L S  +Q   I  E+ E+ + F        RRT        D +  
Sbjct: 358 AAELRAKIAELEAILASPARQREIIGEELTEIVDRFGDE-----RRTRLVPFE-GDMSV- 410

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V ++  G+         RS +     +     +E D ++      T   
Sbjct: 411 -EDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHW 469

Query: 563 ILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  +  G+ Y   A  L   +    G+ +  ++    ++ I        Y +   L++ 
Sbjct: 470 LLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEVMAIKDYQAAPYLVLA 529

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           + +G       +E  +N   G   + +  ++++     V+ GD + +V    + + F  D
Sbjct: 530 TRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAGDDLLLVSRQAQSIRFHAD 589

Query: 677 --QIPEMSRGK----GVRLQS 691
             Q+  M R      G+R  S
Sbjct: 590 DEQLRPMGRATSGVIGMRFDS 610


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 305/588 (51%), Gaps = 31/588 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N+ +++E+ +        LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMG
Sbjct: 23  ILNAGSVLEDPITRT-----LETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMG 76

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGD 124
           L  GA   KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG     
Sbjct: 77  LLKGAR-TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSR 134

Query: 125 --SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T G
Sbjct: 135 DMSCAAARYTEAKLEGVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA +I S N+ E+C   +AL+ +    I   +     PDF  GG I+     + E 
Sbjct: 195 IAVGMACNICSFNLAELCATTVALMKDEHHDISTTMP---APDFVGGGQILYDEAQMREI 251

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRAR+ V     G   I VT+IP       +++KIAEL+ A ++  + D+R
Sbjct: 252 YENGRGSVKVRARYSVVP---GENMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMR 308

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  ILK
Sbjct: 309 DETDLNGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSANFNILVSGQ-PRVMGVREILK 367

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419
           EW A R E + RR+ + +   ++R+ +LKGL    L+ID+ I IIR    E +  P ++ 
Sbjct: 368 EWTAFRVECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIKIIRTTEEETEVVPNLMI 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            F + E Q D +  ++LR L +  EY +K  SE++ L  +   ++ +L    +    I  
Sbjct: 428 GFGIDEVQADYVAEIKLRHLNR--EYILKRTSEIEQLEKDIADLNDILAKPARIRRIIIN 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ +V + + +      RR+        D+   ++      P+TV  +  G+ + +    
Sbjct: 486 ELNDVAKKYGQP-----RRSEILYDLPEDENGSEEEEAPDYPVTVFFTREGYFKKIPPQG 540

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +  +  H  KEGD +   +        L  +   + Y +    L  G+
Sbjct: 541 LRTAGAHKLKEGDEIVQQIETRNNVEALFFTDKQQVYKVRLAELEDGK 588


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 187/569 (32%), Positives = 329/569 (57%), Gaps = 26/569 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + +   L E Y+ YA+S IK RA+P++ DGFKP HR++++ M +M L F     
Sbjct: 17  DEHMRDIVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMYQMKL-FDKK-T 73

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFG-NIDGDSA-AAYR 130
           K A IVG+ + + +PHGD S+Y++LVRL +       PLIS +GNFG +   D A AAYR
Sbjct: 74  KCANIVGQTM-QYNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKHYSRDMAYAAYR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA  T++A  + +G++++AVD  D ++    EPV+ P+ FPN+LA  T GIAVGMA++
Sbjct: 133 YTEAGFTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAMPTLGIAVGMASN 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I S N++E+CEA +  I +P+  I   L+ + GPDF TGG I+  R+ + + YR G+G  
Sbjct: 193 IASFNLKELCEATIEYIKDPKTDI---LDIMPGPDFSTGGDILFDRDEMDKIYRTGKGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR+++ V++  R    I + EIPY      +IE +  L  +KRI  ++DIRD++ ++  
Sbjct: 250 VVRSKYTVDKKNRR---IEIREIPYSTTTEAIIENVISLCKSKRIMDIDDIRDDTDKNGL 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           ++     RS DPD +M  ++ L+ ++  F  N  +L +   P V+ + GIL EW+  R E
Sbjct: 307 LITIEYKRSADPDEIMNKLYSLTPLQDTFSCNFTML-INNNPVVLGVYGILDEWIKFRTE 365

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQ 427
            + R  ++ ++   +++ +++GL    LNID+ I IIR     K   P ++  F + + Q
Sbjct: 366 CIKRELTYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPNLMKGFDIDKTQ 425

Query: 428 VDAILNLRLRSLRKLEEYQI--KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            + I  +RLR++   EE+ +    E++ +  + +K +++++S K    QI    +++KEI
Sbjct: 426 AEYITEIRLRNIN--EEWILDRTKEIEKIKEDIKKNETIISSDKALKKQII---KKLKEI 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSALH 544
            +K   +  R+TT     + +K T+ +  ++   + ++IS  G+++ + + +  + +   
Sbjct: 481 ANKEDYIKPRKTTINTEVKVEKVTVIEE-VKNYDVKIIISEHGYVKKVPTSTYKEDTEYK 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            K+ D +   + A     +L  +  G  Y
Sbjct: 540 LKDDDRILKIIDAQNIGEVLTFTDKGVVY 568


>gi|332273075|gb|AEE39221.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLSDLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/234 (56%), Positives = 173/234 (73%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +D+ +ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR  VE
Sbjct: 186 YVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|332273065|gb|AEE39216.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273067|gb|AEE39217.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273069|gb|AEE39218.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273071|gb|AEE39219.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273073|gb|AEE39220.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273143|gb|AEE39255.1| DNA gyrase subunit A [Aeromonas simiae]
 gi|332273145|gb|AEE39256.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I++L+EYI GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDELMEYIPGPDFPTGGII-NGRSGILQAYRTGRGSIYVRAKAEVE 226


>gi|332273089|gb|AEE39228.1| DNA gyrase subunit A [Aeromonas cavernicola]
          Length = 235

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273077|gb|AEE39222.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 210/675 (31%), Positives = 342/675 (50%), Gaps = 39/675 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL  G   +KSA
Sbjct: 27  VTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGD-SAAAYRYTE 133
            IVG+ + KL+PHGD ++Y+++VRLA        P +  +GNFG    GD + AA RYTE
Sbjct: 85  NIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+ I  
Sbjct: 144 AKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICG 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+C A +  +++P      LLEY+  PDF TGG I+  RE +      G G F++R
Sbjct: 204 FNLNEVCTATMHFLEDPSCD---LLEYMPMPDFSTGGEIIYRREEMERIIETGLGSFQIR 260

Query: 254 ARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
           +RW         W      I V EIPY  +   +I++I +L    ++  + DIRDE+   
Sbjct: 261 SRW--------RWVPEERIIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRDETDLS 312

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RI +  K R +DP+ LM  ++  + ++  F  N NVL  G  P+VM +  IL EW+A 
Sbjct: 313 GLRIAIDLK-RGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDG-YPRVMGVRQILHEWVAW 370

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           R +   RR +F +     R+ +L GL    L+ID+ IAIIR    E +  P ++  F + 
Sbjct: 371 RIQSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMRGFDID 430

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + +  L+LR++   EEY +    D  +A+ E   + L       + I   IR+   
Sbjct: 431 ETQAEFVAELKLRNIN--EEYILNRTKD--IAKLEAEIAELEEILSSEDNIKKVIRDELA 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-L 543
             +K   +  RRT   E S   + +L+   +E+ P+T+++S  G+++ +    +  +A L
Sbjct: 487 AVNKKYVMP-RRTGRIEPSDVIEVSLEPE-VEEYPVTIMLSREGYLKKMTDRVLRKAAEL 544

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            +K+GD   I   +  T  +L+ +   + Y          +       L  DL  + D  
Sbjct: 545 KYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLATDLEMDPDES 604

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             +V D       +L V   G A  V  +  +  T + +    +    K+     +  D 
Sbjct: 605 VIWVIDPEDYKADVLFVFENGRAVRVALAGYVTKTNRKRLKNAIYGGSKLLYAQVLKEDR 664

Query: 661 -VAVVGENRKLLIFS 674
            +A+V  + +L+ F+
Sbjct: 665 DIALVSSDYRLMNFN 679


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/499 (34%), Positives = 280/499 (56%), Gaps = 31/499 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+++ + L   +   +L YALS I  RA+PD RDG K VHRRII AM  + LD    ++
Sbjct: 96  KESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYR 155

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A++VG+V+G  HPHGD+SVYD+L RL+Q F+ + PLI G GNFG+ + D  AA RYTE
Sbjct: 156 KCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMRYTE 214

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+T  ++ ++L  ++ + +D+   ++  + EP+V P + PN+L NG+SGIAVG+AT+IP
Sbjct: 215 CRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNIP 274

Query: 193 SHNVQEICEAALALID----------------------NPEISIEKLLEYIIGPDFPTGG 230
            HN  EI  A +  I                       N + S E + E ++GPDFPTGG
Sbjct: 275 PHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVDDVNGDKSAEVVNE-VLGPDFPTGG 333

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           +I  +RE++ + Y  G+G   +++R+  EE  R S  IV+ +IPY  + + +IE I   I
Sbjct: 334 VIRTTREAMRKIYESGKGTVLIQSRFVFEEKLRIS--IVINQIPYNTRINDIIENINRNI 391

Query: 291 IAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
               I  + D++DES  +  RIV+  K R++   + ++ I    +  T +  N N +++ 
Sbjct: 392 KNNNIIGVNDVKDESDRNGTRIVVELK-RNISSVIEIQEIMTKLERLTEYNYNCNFITLD 450

Query: 350 R-VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +  P    L  ILK WL  R EVL R+    +    + ++I+   +  YLNI+ II   +
Sbjct: 451 QDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTIINSFQ 510

Query: 409 NEDKP-KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           N  K    ++   F L ++Q+ +++ L LR L +L    +  +      + E  +++L +
Sbjct: 511 NHHKGVYKLLKEEFKLNDDQMKSVMRLTLRQLNQLNIENLNEKSAEYTKQIEFYENILKN 570

Query: 468 GKQQWNQIACEIREVKEIF 486
               +++I  ++ E++E F
Sbjct: 571 DNNLYSEIISDLTELREHF 589


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/243 (53%), Positives = 183/243 (75%), Gaps = 2/243 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R
Sbjct: 186 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 245

Query: 311 IVL 313
           IV+
Sbjct: 246 IVI 248


>gi|332272951|gb|AEE39159.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272953|gb|AEE39160.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272955|gb|AEE39161.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272957|gb|AEE39162.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272959|gb|AEE39163.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272979|gb|AEE39173.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 307/570 (53%), Gaps = 35/570 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL  G   +KSA
Sbjct: 27  VTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGD-SAAAYRYTE 133
            IVG+ + KL+PHGD ++Y+++VRLA        P +  +GNFG    GD + AA RYTE
Sbjct: 85  NIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+ I  
Sbjct: 144 AKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICG 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+C A +  +++P      LLEY+  PDF TGG I+  RE +      G G F++R
Sbjct: 204 FNLNEVCTATMHYLEDPSCD---LLEYMPMPDFSTGGEIIYRREEMERIIETGLGSFQIR 260

Query: 254 ARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307
           +RW         W      I V EIPY  +   +I++I +L    ++  + DIRDE+   
Sbjct: 261 SRW--------RWVPEERIIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRDETDLS 312

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            +RI +  K R +DP+ LM  ++  + ++  F  N NVL  G  P+VM +  IL EW+A 
Sbjct: 313 GLRIAIDLK-RGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDG-YPRVMGVRQILHEWVAW 370

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           R +   RR +F +     R+ +L GL    L+ID+ IAIIR    E +  P ++  F + 
Sbjct: 371 RVQSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKGFDID 430

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + +  L+LR++   EEY +    D  +A+ E   + L       + I   IR+   
Sbjct: 431 ETQAEFVAELKLRNIN--EEYILNRTKD--IAKLEAEIAELEEILSSEDNIKKVIRDELA 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSAL 543
             +K   +  RRT   E S   + +L+   IE+ P+T+++S  G+++ +    +   +AL
Sbjct: 487 AVNKKYVMP-RRTGRIEPSDVIEVSLEPE-IEEYPVTIMLSREGYLKKMTDRVLKKAAAL 544

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +K+GD   I   +  T  +L+ +   + Y
Sbjct: 545 KYKDGDEPFIEFPSANTHELLVFTNKSQVY 574


>gi|332272971|gb|AEE39169.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272973|gb|AEE39170.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272975|gb|AEE39171.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272977|gb|AEE39172.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 173/234 (73%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG+VIGK
Sbjct: 2   LKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L 
Sbjct: 62  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLA 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 122 DLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCLA 181

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ID+  I++E L+++I GPDFPT  II   R  I E+YR GRG   +RA+  VE
Sbjct: 182 YIDDENITVEGLMQHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRAKAEVE 234


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 185/588 (31%), Positives = 308/588 (52%), Gaps = 31/588 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I N+ +++E+ +        LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMG
Sbjct: 23  ILNAGSVLEDPITRT-----LETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMG 76

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGD 124
           L  GA   KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG     
Sbjct: 77  LIKGAR-TKSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSR 134

Query: 125 --SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T G
Sbjct: 135 DMSCAAARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA +I S N+ E+C   +AL+ + +  I   +     PDF  GG I+     + + 
Sbjct: 195 IAVGMACNICSFNLAELCNTTIALMKDAKHDISTTMP---APDFVGGGQILYDEAQMRDI 251

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG  +VRAR+       G   I +T+IP       +++KIAEL+ A +I  + D+R
Sbjct: 252 FENGRGSVKVRARYAAVP---GENMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMR 308

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  +   +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  IL+
Sbjct: 309 DETDLNGLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILQ 367

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419
           EW A R E + RR+ + +   ++R+ +LKGL    ++ID+ I IIR    E +  P ++ 
Sbjct: 368 EWTAFRMECVRRRTYYDLHGKEKRLHLLKGLAAILMDIDKAIHIIRTTEEETEVVPNLMI 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            F + E Q D +  ++LR L +  EY +K   E++ L A+   ++ +L    +    I  
Sbjct: 428 GFGIDEVQADYVAEIKLRHLNR--EYILKRTGEIEQLEADIADLNDILAKPARIRKIIMK 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ +V + + +      RR+        ++   ++  +   P+TV  +  G+++ +   S
Sbjct: 486 ELADVAKKYGQP-----RRSEILYDLPEEEGGAEEEAVPDYPVTVFFTREGYLKKIPPQS 540

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           +  +  H  KEGD +   +        L  +   + Y +    L  G+
Sbjct: 541 LRTAGAHKLKEGDEIVRQVETRNNVEALFFTDKQQVYKVRLAELEDGK 588


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 173/234 (73%), Gaps = 1/234 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG+VIGK
Sbjct: 6   LKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            ID+  I++E L+++I GPDFPT  II   R  I E+YR GRG   +RA+  VE
Sbjct: 186 YIDDENITVEGLMQHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRAKAEVE 238


>gi|332273001|gb|AEE39184.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273003|gb|AEE39185.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273005|gb|AEE39186.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273007|gb|AEE39187.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273009|gb|AEE39188.1| DNA gyrase subunit A [Aeromonas tecta]
          Length = 235

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGAII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332272961|gb|AEE39164.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272963|gb|AEE39165.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272965|gb|AEE39166.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272967|gb|AEE39167.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272969|gb|AEE39168.1| DNA gyrase subunit A [Aeromonas piscicola]
          Length = 235

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332272939|gb|AEE39153.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272941|gb|AEE39154.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272943|gb|AEE39155.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272945|gb|AEE39156.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272947|gb|AEE39157.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272949|gb|AEE39158.1| DNA gyrase subunit A [Aeromonas salmonicida]
          Length = 235

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 231/370 (62%), Gaps = 2/370 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDH-MAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSF 378
           +    +  +F
Sbjct: 360 KRRCIKTDTF 369


>gi|332272991|gb|AEE39179.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272993|gb|AEE39180.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272995|gb|AEE39181.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272997|gb|AEE39182.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272999|gb|AEE39183.1| DNA gyrase subunit A [Aeromonas eucrenophila]
          Length = 235

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGAII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|332273057|gb|AEE39212.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273059|gb|AEE39213.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273061|gb|AEE39214.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273063|gb|AEE39215.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 235

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/250 (53%), Positives = 184/250 (73%), Gaps = 2/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 TGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAED-VRIVL 313
           S    +RIV+
Sbjct: 240 SDRTGMRIVI 249


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 172/229 (75%), Gaps = 1/229 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 228


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 184/250 (73%), Gaps = 2/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAED-VRIVL 313
           S    +RIV+
Sbjct: 240 SDRTGMRIVI 249


>gi|332272981|gb|AEE39174.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272983|gb|AEE39175.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272985|gb|AEE39176.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272987|gb|AEE39177.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272989|gb|AEE39178.1| DNA gyrase subunit A [Aeromonas molluscorum]
          Length = 235

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 171/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENNDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGAII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 184/250 (73%), Gaps = 2/250 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 SAED-VRIVL 313
           S    +RIV+
Sbjct: 240 SDRTGMRIVI 249


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 177/234 (75%), Gaps = 1/234 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 186 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 130/234 (55%), Positives = 177/234 (75%), Gaps = 1/234 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 7   YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+I
Sbjct: 67  TEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNI 126

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   
Sbjct: 127 PPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSIT 185

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 186 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239


>gi|332273043|gb|AEE39205.1| DNA gyrase subunit A [Aeromonas bivalvium]
 gi|332273045|gb|AEE39206.1| DNA gyrase subunit A [Aeromonas bivalvium]
          Length = 235

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           ++++L+ Y+ GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TVDELMAYVTGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  276 bits (707), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 294/569 (51%), Gaps = 26/569 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA   KSA IVG  + 
Sbjct: 37  TLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGSTM- 93

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGD--SAAAYRYTEARMTQVAE 141
            L+PHGD ++YD++VR+ +       P +  +GNFG       S AA RYTEA++  V E
Sbjct: 94  HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLESVCE 153

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA +I S N+ E+C 
Sbjct: 154 ELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAELCA 213

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             +AL+ +    I   +     PDF  GG IV     + E Y  GRG  +VRAR+     
Sbjct: 214 TTVALMKDEHHDIGTTMP---APDFVGGGQIVYDEAQMREIYENGRGSVKVRARY---NA 267

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   I VT+IP       +++KIAEL+   ++  + D+RDE+  +   +     R +D
Sbjct: 268 VPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKLTLDLKRGVD 327

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D LM  +F  + +E  F  N N+L  G+ P+VM +  ILKEW A R E + RR+ + + 
Sbjct: 328 ADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILKEWTAFRVECVRRRTYYDLH 386

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++R+ +L+GL    L+ID+ I IIR    E +  P ++  F + E Q D +  ++LR 
Sbjct: 387 GKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGIDEVQADYVAEIKLRH 446

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K   E++ L  +   ++ +L    +    I  E+ +V + + K      R 
Sbjct: 447 LNR--EYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAKKYGKP-----RC 499

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
           +        + A  ++  +   P+TV  +  G+ + +   S+  +  H  KEGD +   L
Sbjct: 500 SEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAHKLKEGDEIIQQL 559

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                   L  +   + Y +    L  G+
Sbjct: 560 ETRNNVEALFFTDKQQVYKVRLAELEDGK 588


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 186/569 (32%), Positives = 294/569 (51%), Gaps = 26/569 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA   KSA IVG  + 
Sbjct: 37  TLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGSTM- 93

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGD--SAAAYRYTEARMTQVAE 141
            L+PHGD ++YD++VR+ +       P +  +GNFG       S AA RYTEA++  V E
Sbjct: 94  HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLESVCE 153

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA +I S N+ E+C 
Sbjct: 154 ELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAELCA 213

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             +AL+ +    I   +     PDF  GG IV     + E Y  GRG  +VRAR+     
Sbjct: 214 TTVALMKDEHHDIGTTMP---APDFVGGGQIVYDEAQMREIYENGRGSVKVRARY---NA 267

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   I VT+IP       +++KIAEL+   ++  + D+RDE+  +   +     R +D
Sbjct: 268 VPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKLTLDLKRGVD 327

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D LM  +F  + +E  F  N N+L  G+ P+VM +  ILKEW A R E + RR+ + + 
Sbjct: 328 ADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILKEWTAFRIECVRRRTYYDLH 386

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++R+ +L+GL    L+ID+ I IIR    E +  P ++  F + E Q D +  ++LR 
Sbjct: 387 GKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGIDEVQADYVAEIKLRH 446

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K   E++ L  +   ++ +L    +    I  E+ +V + + K      R 
Sbjct: 447 LNR--EYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAKKYGKP-----RC 499

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-FKEGDSLKIAL 555
           +        + A  ++  +   P+TV  +  G+ + +   S+  +  H  KEGD +   L
Sbjct: 500 SEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAHKLKEGDEIIQQL 559

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                   L  +   + Y +    L  G+
Sbjct: 560 ETRNNVEALFFTDKQQVYKVRLAELEDGK 588


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/382 (43%), Positives = 225/382 (58%), Gaps = 45/382 (11%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL P++RS+DP +LMES+F LS++E R
Sbjct: 3   KARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELEAR 62

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            PLN+NVL  G VP+V+ L   L+EW+ HRR VL RRS++R+  I+RR+EIL GLLI YL
Sbjct: 63  VPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIVYL 122

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           ++DE+I IIR ED+PK  +++RF LT+ Q +AIL+ RLRSLRKLEE ++K E D L  EK
Sbjct: 123 DLDEVIRIIREEDEPKAALMARFELTDVQANAILDTRLRSLRKLEEMELKREFDELTKEK 182

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + I+ LL S K QW  I  +IR VK+ F   T LG+RRTT                +E  
Sbjct: 183 QGIEELLGSEKLQWADITKQIRAVKKTFGPETKLGKRRTT----------------LENP 226

Query: 519 PITVVI---SNRGWIRSLKSHSVD-------LSALHFKEGDSLKIALHAHTTDRILLLST 568
           P T  I   +  G  R+     V          A H   G  L+   HA     ++    
Sbjct: 227 PDTAGIDFTARHGRARADHGDPVREGLDPRAEGARHRPVGRLLQGRRHAEG---VVPQRD 283

Query: 569 DGKAYTLPAGNL-------------LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           DG+    PA  L              +G G G+ ++L++DL+   +IV A  Y    KLL
Sbjct: 284 DGQD---PAARLERQGLHPRGVEAARAGPGFGDPVRLMVDLDDGTEIVAALPYKPESKLL 340

Query: 616 VVSSKGNAFIVEESEIIANTRK 637
              S G  FI     + ANTR+
Sbjct: 341 FAGSDGRGFIAPSDALFANTRR 362


>gi|332273153|gb|AEE39260.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273155|gb|AEE39261.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273157|gb|AEE39262.1| DNA gyrase subunit A [Aeromonas schubertii]
          Length = 235

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/227 (56%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 DWVPNYDGTELIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I+ L+EYI GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDDLMEYIPGPDFPTGGII-NGRSGIIQAYRTGRGSIYVRAKAEVE 226


>gi|332273021|gb|AEE39194.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGGII   R  I+++YR GRG   VRAR  VE
Sbjct: 181 TIDELMTYVTGPDFPTGGII-NGRSGIIQAYRTGRGSVYVRARAEVE 226


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGAII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     ++KSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 S 305
           S
Sbjct: 240 S 240


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/233 (55%), Positives = 176/233 (75%), Gaps = 1/233 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 8   KKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYT 67

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP
Sbjct: 68  EARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIP 127

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +
Sbjct: 128 PHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITI 186

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 187 RAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239


>gi|332273047|gb|AEE39207.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273049|gb|AEE39208.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273051|gb|AEE39209.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273053|gb|AEE39210.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273055|gb|AEE39211.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 235

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/227 (55%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ ++ GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTHVTGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|332273031|gb|AEE39199.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273033|gb|AEE39200.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273035|gb|AEE39201.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273037|gb|AEE39202.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273039|gb|AEE39203.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273041|gb|AEE39204.1| DNA gyrase subunit A [Aeromonas encheleia]
          Length = 235

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALIDN ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKIPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIDNGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ YI GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYISGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKAEVE 226


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +RIV+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMAYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +RIV+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|332273029|gb|AEE39198.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGGII   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/241 (53%), Positives = 178/241 (73%), Gaps = 1/241 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GR    +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 S 305
           S
Sbjct: 240 S 240


>gi|332273149|gb|AEE39258.1| DNA gyrase subunit A [Aeromonas diversa]
 gi|332273151|gb|AEE39259.1| DNA gyrase subunit A [Aeromonas diversa]
          Length = 235

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           ++   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 EWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            I+ L+EYI GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 GIDDLMEYIPGPDFPTGGII-NGRSGIIQAYRTGRGSIYVRAKAEVE 226


>gi|332273023|gb|AEE39195.1| DNA gyrase subunit A [Aeromonas media]
 gi|332273027|gb|AEE39197.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGGII-NGRSGIIQAYRTGRGSVYVRAKAEVE 226


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/318 (40%), Positives = 209/318 (65%), Gaps = 1/318 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KSA+ VG VIG 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR+++++  +++
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+ S+  L+++I GPDFPTG I+ +    I ++Y  G+G   VR++  +EEV  G 
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAIL-QGVAGIKQAYETGKGKIIVRSKTRIEEVRGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ EIPY+V K+ L+ K+ E+ + K++  + ++RDES  +   ++    +  +   +
Sbjct: 240 EQIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGI 299

Query: 326 MESIFMLSDMETRFPLNM 343
           +  +   +D++  +  NM
Sbjct: 300 LNYLLKNTDLQVAYNFNM 317


>gi|332273025|gb|AEE39196.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 170/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I++L+ Y+ GPDFPTGGII   R  I+++YR GRG   VRA+  VE
Sbjct: 181 TIDELMTYVTGPDFPTGGII-NGRSGIIQAYRTGRGSVYVRAKAEVE 226


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 154/491 (31%), Positives = 275/491 (56%), Gaps = 19/491 (3%)

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDL 324
            +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D 
Sbjct: 9   AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 68

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + 
Sbjct: 69  VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 128

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE
Sbjct: 129 KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEE 188

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   L  E++++  +L S ++  N +  E++     +        RR+   E   
Sbjct: 189 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGDD-----RRSPLQEREE 243

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++
Sbjct: 244 A-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVV 302

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            + + G++Y +    L S RG GE +   + L     +    +     KLL+ S  G  F
Sbjct: 303 FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGF 362

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           +   ++++A  R GK  + +     +   +V++   D +  + +  ++L+F +  +P++S
Sbjct: 363 VCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 422

Query: 683 RGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +GKG ++        +  + G++ +        LT I    R       +L    G+RG 
Sbjct: 423 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGR 481

Query: 736 VGSLVPKGFPR 746
            G+L+ +G  R
Sbjct: 482 RGTLM-RGLQR 491


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  274 bits (700), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V+ + L   L + ++ YALS I  RA+PD RDG K VHRRI+ AM  M L     ++K
Sbjct: 96  HTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRK 155

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VG+V+GK HPH D+SVYD+L RL+Q F+ R PL+ G GNFG+ D D  AA RYTE 
Sbjct: 156 CAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTEC 214

Query: 135 RMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R++  +E L+L  + ++ VD    ++  + EP V PSK P LL NG+SGIAVG+AT+IP 
Sbjct: 215 RLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPP 274

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN +EI +AA  +  N   +  E+LL  + GPDFPTGG IV S +++ + Y  G+G   +
Sbjct: 275 HNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIML 334

Query: 253 RARWCVEE-------------------------VGRGSW-CIVVTEIPYQVQKSRLIEKI 286
           +A++  EE                            GS   I+V E+PY V+ S ++  I
Sbjct: 335 QAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAI 394

Query: 287 AELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR---SLDPDLLMESIFMLSDMETRFPLN 342
           ++ +    +  + D+RDES    +R+V+  K      L+ + +M+ +  +S + + F  N
Sbjct: 395 SKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCN 454

Query: 343 MNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
              L S G  P  + L   LK WL  R + + +R   + +    R+ I+KG  IA+  ID
Sbjct: 455 FIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514

Query: 402 EIIAIIRNEDKPKPVM----VSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +I+ ++RN       M      R+  L   Q  A+L + L  L ++E  +I  E   L  
Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             ++ + +L      ++ I  E+  +++   K   +  R TT 
Sbjct: 575 SIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRHRCTTL 617


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +RIV+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 178/253 (70%), Gaps = 1/253 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+    LA IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   V
Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243

Query: 253 RARWCVEEVGRGS 265
           RAR  VE   +G+
Sbjct: 244 RARATVETNEKGA 256


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (699), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  GRG   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGRGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|332273011|gb|AEE39189.1| DNA gyrase subunit A [Aeromonas sp. MDC 2467]
 gi|332273013|gb|AEE39190.1| DNA gyrase subunit A [Aeromonas sp. MDC 2473]
 gi|332273015|gb|AEE39191.1| DNA gyrase subunit A [Aeromonas sp. MDC 2468]
 gi|332273017|gb|AEE39192.1| DNA gyrase subunit A [Aeromonas sp. MDC 2469]
 gi|332273019|gb|AEE39193.1| DNA gyrase subunit A [Aeromonas sp. MDC 2472]
          Length = 235

 Score =  273 bits (699), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 169/227 (74%), Gaps = 1/227 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           +I+ L+ Y+ GPDFPTG II   R  IV++YR GRG   VRA+  VE
Sbjct: 181 TIDDLMTYVTGPDFPTGAII-NGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 323/625 (51%), Gaps = 44/625 (7%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYN 159
           + Q F  RYPL++G GNFG++D D  AA RYTE R++ ++ E +L  + E  VDF D ++
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P+++ EKL +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG------SWCIVVTEI 273
            I GPDFPTGG I+++   I ++Y  GRG   VR    VEE+  G         ++VTE+
Sbjct: 121 LIPGPDFPTGGEIIDT-SGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTEL 179

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+  IEKIA+L+   R+  + D+RDES      V+    R   P  +++ ++  +
Sbjct: 180 PYQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQT 239

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +++ F   M  L  G+ P+ + L   L+E+L  R + L R+ ++ +    +R  +++GL
Sbjct: 240 PLQSNFGAIMLALVNGQ-PRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGL 298

Query: 394 LIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           L+    +  +I I+ N       K     + +L+E+Q DAIL + +R L  LE  ++++E
Sbjct: 299 LVCLNQLTRVIEILTNAPDGTTAKTQFQEQLNLSESQADAILAMPMRRLTGLERQKLQTE 358

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-------------------KSTD 491
            + L A  E +  LL+S  +    +  E+R +K  ++                   KS  
Sbjct: 359 FEELTARIETLQELLSSRHELLKTLKKELRSLKRKYADPRRTKIRSAQSLKEPKQPKSEK 418

Query: 492 LGRRRTTFCEVSRADKA-TLQQAMIEKEPITVVI--SNRGWIRSLKSHSVDLSALHFKEG 548
             R++    +  +   + +    +IE E    V+  + +G ++ L+S     S    K+G
Sbjct: 419 QTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEFTYQGHVQRLRSAPDPKSKPSIKDG 478

Query: 549 DSLKIALHAHTT-DRILLLSTDGKAYTLPAGNLLSGRGHGEAI---QLLIDLNHNQDIVT 604
           +   I     TT      L++ GKAY L   ++    G  + I   +LL D   ++ ++ 
Sbjct: 479 NDFVIQTQQTTTASEFATLTSGGKAYPLKVQDIPPAAGRKQGIPVTRLLPDAAQSETVIA 538

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDH 660
            F       +  L++++ +G    +  +E++  T +G T +K+  E+ +  V +  + D 
Sbjct: 539 HFRPHELTESVSLILLTQQGRVKRLPATELLNLTARGLTTVKLKEEDVLAYVTLAQSTDD 598

Query: 661 VAVVGENRKLLIFSID--QIPEMSR 683
           + +   N +LL F I+   +P M R
Sbjct: 599 LIIATSNGRLLRFEINDQNLPIMGR 623


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/304 (44%), Positives = 200/304 (65%), Gaps = 3/304 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +      
Sbjct: 4   TFDNDRIVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVSTQ 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK AR+VGEV+GK HPHGD SVY +L R+AQ +  RY L+ GQG FG++DGDS AA R
Sbjct: 64  PYKKCARVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAVGMAT+
Sbjct: 124 YTECRLSKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P+HN+ E+ +   A IDNP+I  + L++YI GPDFPTG  I      + ++Y  GRG  
Sbjct: 184 MPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGAYIY-GLAGVRDAYETGRGRI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
            +RA+  +E        IVVTEIPY V K+ L++ IA+L    +I  + ++ DES  + +
Sbjct: 243 VMRAKAEIESTETHDK-IVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQGM 301

Query: 310 RIVL 313
           RIV+
Sbjct: 302 RIVV 305


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NID++I
Sbjct: 297 IALDNIDDVI 306


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 212/310 (68%), Gaps = 5/310 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           QV K++LIE IA+++  K+I  + D+RDES  E +R+V+  K R  +P++ +  ++  + 
Sbjct: 179 QVNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTK 237

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+
Sbjct: 238 MQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLI 296

Query: 395 IAYLNIDEII 404
           IA  NIDE+I
Sbjct: 297 IALDNIDEVI 306


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 210/669 (31%), Positives = 324/669 (48%), Gaps = 114/669 (17%)

Query: 120  NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            ++DGD  AA RYTE RMT++A+ +L  +D++ VDF   Y+  + EP V P++FPNLL NG
Sbjct: 631  SVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTEHEPSVLPARFPNLLVNG 690

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +SGIAVGMAT+IP HN++E+ +A LA+IDNP +S+++L+E + GPDFPT G+I   R  I
Sbjct: 691  SSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVPGPDFPTAGLINGVR-GI 749

Query: 240  VESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             E+YR GRG   +RAR   E   R G   IV+TEIPYQV K+RL+E+IAEL+  K+I  +
Sbjct: 750  REAYRTGRGRCVMRARATTETQKRSGREAIVITEIPYQVNKARLLERIAELVKEKKIEGI 809

Query: 299  --EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              + +RDES +D   ++    R    ++L+ +++  + ++  F +NM  L  G+ P  + 
Sbjct: 810  AQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFGINMVALVDGQ-PLTLN 868

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            L  IL+ +L HRR+V+ RR+ + ++    R  +L+G  IA  NIDE+IA I+    P   
Sbjct: 869  LKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANIDEVIATIKAAANPAEA 928

Query: 417  ----------------MVSR---------------------FSLTENQVDAILNLRLRSL 439
                            M+ R                     + L+E Q  AIL+L+L  L
Sbjct: 929  RERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRLSERQAKAILDLQLHRL 988

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
              LE+ +I  E + +LA    +  +L+   +    I  E+  V++ F      G  R T 
Sbjct: 989  TGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVRDQF------GDERRTE 1042

Query: 500  CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
             ++ + D  TL+  +I  E   V +S++G++++         K      SA   KE D +
Sbjct: 1043 IQLDQTD-LTLED-LIAPEDRVVTLSHQGYVKTQPISDYQAQKRGGKGKSATAIKEEDFI 1100

Query: 552  KIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-------------HGEAIQLL---- 593
                 A++ D +L  S+ G+ Y L    L  +GRG              GE I  L    
Sbjct: 1101 DRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNLLPLEAGERITTLLPVR 1160

Query: 594  -----------------------------------IDLNHNQDIVTAFVYDSTCKLLVVS 618
                                               IDL  ++ +V A +      L++ +
Sbjct: 1161 DYEDGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDELLVGATITGGEQDLMLFT 1220

Query: 619  SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSI 675
            S G A    ES + +  R       V  +E  +++  V    G  V  V EN       +
Sbjct: 1221 SAGKAVRFSESHVRSMGRAAHGVRGVMLQEGQRVIALVAPEDGGTVLSVTENGYGKRTDV 1280

Query: 676  DQIPEMSRG 684
            DQ P   RG
Sbjct: 1281 DQFPTKGRG 1289



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 82/112 (73%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  ++L   + + YL YA+S I  RA+PD+RDG KPVHRR++ +M E G  +  A++K
Sbjct: 6   KEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNRAYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           SAR+VG+V+GK HPHGD ++YD++VR+AQPF  R  L+ GQGNFG   GD+A
Sbjct: 66  SARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGDTA 117


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 205/663 (30%), Positives = 337/663 (50%), Gaps = 43/663 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YA+S    RA P++ DGFKP HR++++ M +MGL  G   +KSA IVG+ + KL+PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSANIVGQTM-KLNPHG 57

Query: 91  DQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI-DGD-SAAAYRYTEARMTQVAELILQGV 147
           D ++Y+++VRLA        P +  +GNFG    GD S AA RYTEA+++ ++  I + +
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+ I   N+ E+C A +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW- 266
            +P+     LLEY+  PDF TGG I+  RE + +    G G F++R+RW         W 
Sbjct: 178 QDPDCD---LLEYMPMPDFSTGGEIIYRREEMEKIIETGLGSFQIRSRW--------RWI 226

Query: 267 ----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLD 321
                I V EIPY  +   +IE+I +L    ++  + DIRDE+    +RI +  K R +D
Sbjct: 227 PEERIIEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLK-RGVD 285

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD LM  ++  + ++  F  N NVL  G  P+VM +  IL EW+  R E   RR +F + 
Sbjct: 286 PDKLMAKLYRSTTLQDSFSCNFNVLVDG-YPRVMGVRQILHEWVKWRIESTRRRINFDLG 344

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRS 438
               R+ +L GL    L+ID+ IAIIR    E +  P ++  F + E Q + +  L+LR+
Sbjct: 345 KKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKGFDIDETQAEFVAELKLRN 404

Query: 439 LRKLEEYQIKSELD--NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           +   EEY +    D   L +E  +++ +L+S +     I+ E+  V + +     +  RR
Sbjct: 405 IN--EEYILNRTKDIAKLESEIAELEEILSSEENIKKVISDELAAVNKKY-----VMPRR 457

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSALHFKEGDSLKIAL 555
           T   E     + +L+   +E+ P+T+++S  G+++ +    +   + L +K+GD   I  
Sbjct: 458 TGRIEPHEVIEVSLEPE-VEEYPVTIMLSRDGYLKKMTDRVLKKATTLKYKDGDKPFIEF 516

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TC 612
            +  T  +L+ +   + Y          +       L  DL    D    +V D      
Sbjct: 517 PSSNTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLEMEPDESVIWVIDPEDYKA 576

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            +L V   G    V  S  +  T + +    +    K+     +  D  +A+V  + +L+
Sbjct: 577 DVLFVFENGRVVRVALSGYVTKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLM 636

Query: 672 IFS 674
            F+
Sbjct: 637 NFN 639


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 188/571 (32%), Positives = 311/571 (54%), Gaps = 38/571 (6%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++D
Sbjct: 5   KNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMD 64

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+R  +E    G   I
Sbjct: 65  NPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRSRTEIETTKTGRERI 123

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLME 327
           VVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V+  K R    ++++ 
Sbjct: 124 VVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVK-RDASANVILN 182

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ RR+ F  +  + R 
Sbjct: 183 NLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARA 241

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  AIL++RLR L  LE 
Sbjct: 242 HILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQAILDMRLRRLTGLER 301

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS      +RRT   E+  
Sbjct: 302 DKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD-----KRRT---ELMV 353

Query: 505 ADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIAL 555
               +L+ + +IE+  + + +SNRG+I+ L        K     +     K+ D ++  +
Sbjct: 354 GQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 413

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS--- 610
              T D +L  +  G+ Y L    +   GR   G  +  L+ L+ ++ I T    +S   
Sbjct: 414 STSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS 473

Query: 611 -TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
               L   +  G   IV+ + +   AN R+ G   L +  E+++  V+   GD   ++G 
Sbjct: 474 DDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGT 530

Query: 667 NRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695
                + F+   +  MSR   GV+  + ++G
Sbjct: 531 KFGYAVRFNQSAVRGMSRIATGVKGVNLREG 561


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 324/620 (52%), Gaps = 69/620 (11%)

Query: 5   NISNSNTLVE--------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           ++SNS+T VE        E+++ + L   +   +L YALS I  RA+PD RDG K VHRR
Sbjct: 79  DLSNSSTGVEVLDGDSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRR 138

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           II AM  + LD    ++K A++VG+V+G  HPH D+SVYD+L RL+Q F+ + PLI G G
Sbjct: 139 IIWAMHMLKLDPNGQYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHG 198

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           NFG+ + D  AA RYTE R+T  +++I L  ++ + +D+   ++  + EP+V P + PN+
Sbjct: 199 NFGS-NNDPPAAMRYTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNI 257

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDN-------------PEISIEKL----- 217
           L NG+SGIAVG+AT+IP HN  E+  A +  I +              + +++ L     
Sbjct: 258 LINGSSGIAVGLATNIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKN 317

Query: 218 ---LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR----------- 263
              +  ++GPDFPTGG+I  +RE++ + Y  G+G   +++++  EE  R           
Sbjct: 318 VEIVNEVMGPDFPTGGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKD 377

Query: 264 ------GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316
                     IV+ +IPY  + + +IE I   I    I  + D++DES  +  RIV+  K
Sbjct: 378 IKFKHNSRISIVINQIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELK 437

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDGILKEWLAHRREVLFRR 375
            R++   + ++ I       T +    N +++ +  P    L  ILK WL  R +VL R+
Sbjct: 438 -RNISSVIEIQEIMAKLQRLTEYNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRK 496

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAILNL 434
               +  + + ++I+   +I YLNI+ II   +N  K    V+   F L ++Q+ +++ L
Sbjct: 497 YKHLLLKLKKNLDIINAYIIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRL 556

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK------ 488
            LR L +L    +K +      + E  +++LN+    +N+I  ++ E+K+ F        
Sbjct: 557 TLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKNIKRNTL 616

Query: 489 --STDLGRRRTTFCEVSRADKAT----LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              TD G    T  E     + T    +  +++E +   ++ ++ G I  +K   +D   
Sbjct: 617 IIYTDEGSNFETTVEGVEGPEGTSEDKVDPSVVESDDNIIIYNSLGRISKIK---LDQKF 673

Query: 543 LHFKEGDSLKIA--LHAHTT 560
               +  S++I+  +H+H+T
Sbjct: 674 YKSNKNKSIRISNPIHSHST 693


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 158/207 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG+VIGK
Sbjct: 6   LKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAHELLA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 126 DLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVNGCLA 185

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGII 232
            ID+  ISIE L+E+I GPDFPT  II
Sbjct: 186 YIDDENISIEGLMEHIPGPDFPTAAII 212


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 121/238 (50%), Positives = 170/238 (71%), Gaps = 1/238 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L EE    V++   +   YL YA+S I  RA+PD+RDG KPVHRRI++ M++MGL    A
Sbjct: 2   LTEERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD  AA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D++ VDF  TY+E D EP+V P+K PNLL NG  GIAVG AT+I
Sbjct: 122 TEARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P+HN+ E+  A L +++NP  ++ +L++ I GPDFPT G I  + + I ++Y  G G 
Sbjct: 182 PTHNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAGFIYGT-QGIRDAYEHGAGA 238


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 352/684 (51%), Gaps = 33/684 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A IVG  + 
Sbjct: 34  TLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCANIVGATM- 90

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG-NIDGDSA-AAYRYTEARMTQVAE 141
           KL+PHGD ++Y++LVRL++      +P +  +GNFG +   D A AA RYTEA++  + E
Sbjct: 91  KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTEAKLEPICE 150

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+S+   N+ E+CE
Sbjct: 151 ELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVCPFNLAEVCE 210

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            A+ALI N + +    L+ + GPDFP GG ++     + + YR GRG  ++RA++     
Sbjct: 211 TAIALIKNKDANA---LDTLKGPDFPGGGYLLYDEAELEKIYRTGRGSVKLRAKY---RF 264

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +   CI +TEIP       +IEKI  L+ A +I  +  IRDE+  D   +     + +D
Sbjct: 265 NKEERCIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIGIDIKKGVD 324

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD LM+ ++ L+ ++  +  N N+L  G  P+VM +  IL EW   R + + RR  + ++
Sbjct: 325 PDKLMQKLYKLTPLQDTYSCNFNILVHG-YPKVMGVYEILDEWTRFRVDCVRRRVEYDLK 383

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRS 438
               ++ +LKGL    L+ID+ I IIR  ++     P ++  F + E Q D +  ++LR 
Sbjct: 384 KKKDKLHLLKGLGKILLDIDKAIRIIRETEEESEVIPNLMIGFGIDEIQADYVAEIKLRH 443

Query: 439 LRKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K  SE + L  E  +++ +L S K+  + I   IRE+K++     + G+ R
Sbjct: 444 LNR--EYILKRTSETEKLEKEIAELEDVLGSEKKIKDII---IRELKDVIK---NYGQER 495

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIAL 555
            T        +   ++  IE  P  + IS  G+ +     S+ +++    KEGD +    
Sbjct: 496 KTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKKCTMQSLRMASDQKLKEGDRMMSET 555

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF-VYDSTC 612
            +     +L  S     Y   A    + +    G+ I  ++  ++ +   T     D + 
Sbjct: 556 ESSNRAELLFFSDKASVYKSKASRFGNTKASDLGDYIPAVLGFDNGEAFHTMVETMDYSG 615

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            LL V   G A  V        T + K     S +  +  ++K+T +  V +   N + L
Sbjct: 616 CLLFVFENGKAAKVPLDSYATKTNRKKLANAYSDKSPLVAILKLTDNAQVMLRTTNGRAL 675

Query: 672 IFSID-QIPEMSRG-KGVRLQSYK 693
           +F     +P+ +R  +GV++ + K
Sbjct: 676 LFDTALLLPKTTRNTQGVQVMTLK 699


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 136/298 (45%), Positives = 184/298 (61%), Gaps = 3/298 (1%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     +KK AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVD 153
           YDSLVRLAQ F  R PL+ G GNFG++D D AAA RYTE R+   AE L+L  +    V+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +RDT++    EPVV P+  PNLL NG+ GIAVG+A++IP HN+ E+  A   LI NPE++
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW-CIVVTE 272
            E+L+E + GPD+PTGG ++   E ++ +YR GRG           E   G    IV+TE
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPE-LLAAYRTGRGSAAAEKLAQAAETADGGPELIVITE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           +PY V K  +               + D+RDES      V+       + +LL+  +F
Sbjct: 240 LPYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLF 297


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  263 bits (672), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 159/217 (73%), Gaps = 1/217 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRG 216


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 295/558 (52%), Gaps = 37/558 (6%)

Query: 26   LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       KSA IVG  +  
Sbjct: 676  LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNL--YNKRTKSAHIVGSNMS- 731

Query: 86   LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEARMTQVAELI 143
            L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYTEA  + + +  
Sbjct: 732  LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYTEAGASNINKEF 791

Query: 144  LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
              G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ PS N++E+C+  
Sbjct: 792  FHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATPSFNLKEVCDLT 851

Query: 204  LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            +A I +  I +    +Y++ PDF TGG IV   + + + Y  G+G   +RA++ V++   
Sbjct: 852  IAYIKDTNIVVS---DYLLCPDFATGGFIVRDVDKLNQIYETGQGSVTLRAKYGVKDNE- 907

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELI------IAKRIPLLEDIRDESAEDVRIVLFPKN 317
                I+VTEIPY   +  +++ I  L       I + I  + D  D     + I +  KN
Sbjct: 908  ----IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITIKI-KKN 962

Query: 318  RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++  +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR  + R S+
Sbjct: 963  TNI--ELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCISRVSN 1020

Query: 378  FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAILN 433
            +  +  + ++ +L    I   +ID ++ I RN    +D  K + +  F + + Q + + N
Sbjct: 1021 YDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQL-YFKIDQEQAEYVSN 1079

Query: 434  LRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L+ L K    +I + ++  L  E   + ++ N   +  N I  +++ +++ +      
Sbjct: 1080 IKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIP--- 1136

Query: 493  GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R+T    V      TL+   IE    T+V++ + +I+  +  S    +   K+ D + 
Sbjct: 1137 --RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDKIL 1191

Query: 553  IALHAHTTDRILLLSTDG 570
                 +  D +LL +  G
Sbjct: 1192 QFHQCNNKDDLLLFTNKG 1209


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 160/217 (73%), Gaps = 1/217 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRG 216


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 160/217 (73%), Gaps = 1/217 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRG 216


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 169/225 (75%), Gaps = 1/225 (0%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ 
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE
Sbjct: 121 DGVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEE 179

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 295/558 (52%), Gaps = 37/558 (6%)

Query: 26   LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       KSA IVG  +  
Sbjct: 676  LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNL--YNKRTKSAHIVGSNMS- 731

Query: 86   LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEARMTQVAELI 143
            L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYTEA  + + +  
Sbjct: 732  LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYTEAGASNINKEF 791

Query: 144  LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
              G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ PS N++E+C+  
Sbjct: 792  FHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATPSFNLKEVCDLT 851

Query: 204  LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            +A I +  I +    +Y++ PDF TGG IV   + + + Y  G+G   +RA++ V++   
Sbjct: 852  IAYIKDTNIVVS---DYLLCPDFATGGFIVRDVDKLNQIYETGQGSVTLRAKYEVKDNE- 907

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELI------IAKRIPLLEDIRDESAEDVRIVLFPKN 317
                I+VTEIPY   +  +++ I  L       I + I  + D  D     + I +  KN
Sbjct: 908  ----IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITIKI-KKN 962

Query: 318  RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++  +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR  + R S+
Sbjct: 963  TNI--ELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCISRVSN 1020

Query: 378  FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAILN 433
            +  +  + ++ +L    I   +ID ++ I RN    +D  K + +  F + + Q + + N
Sbjct: 1021 YDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQL-YFKIDQEQAEYVSN 1079

Query: 434  LRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L+ L K    +I + ++  L  E   + ++ N   +  N I  +++ +++ +      
Sbjct: 1080 IKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIP--- 1136

Query: 493  GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R+T    V      TL+   IE    T+V++ + +I+  +  S    +   K+ D + 
Sbjct: 1137 --RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDKIL 1191

Query: 553  IALHAHTTDRILLLSTDG 570
                 +  D +LL +  G
Sbjct: 1192 QFHQCNNKDDLLLFTNKG 1209


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 158/217 (72%), Gaps = 1/217 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI+ A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTEAR+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRG 216


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +RIV+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 GISDLRDESDREGMRIVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQIL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 118/221 (53%), Positives = 161/221 (72%), Gaps = 1/221 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 4   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L 
Sbjct: 64  YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLD 123

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 124 DLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIA 183

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           LI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 184 LINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 223


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 169/225 (75%), Gaps = 1/225 (0%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ 
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE
Sbjct: 121 DGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEE 179

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 211/687 (30%), Positives = 355/687 (51%), Gaps = 39/687 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A IVG  + 
Sbjct: 35  TLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCANIVGATM- 91

Query: 85  KLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG-NIDGDSA-AAYRYTEARMTQVAE 141
           KL+PHGD ++Y++LVRL++      +P +  +GNFG +   D A AA RYTEA++  + E
Sbjct: 92  KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTEAKLEPICE 151

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+++   N+ E+CE
Sbjct: 152 ELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVCPFNLTEVCE 211

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            A+AL+ +P+ +    L+ + GPDFP GG ++     + + YR GRG  ++RA++     
Sbjct: 212 TAIALMKDPDANA---LDTLKGPDFPGGGYLLYDEAELDKIYRTGRGSVKLRAKYRYNSD 268

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            R   CI VTEIP       +IEKI  L+ A +I  +  IRDE+  D   +     + +D
Sbjct: 269 ER---CIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIGIDIKKGVD 325

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P+ LM+ ++ L+ ++  +  N N+L  G  P+VM +  IL EW   R + + RR ++ ++
Sbjct: 326 PEKLMQKLYKLTPLQDTYSCNFNILVHG-YPKVMGVYEILDEWTKFRLDCVKRRVNYDLK 384

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
               R+ +LKGL    L+ID+ I IIR    E +  P ++  F + E Q + +  ++LR 
Sbjct: 385 KKRDRLHLLKGLGKILLDIDKAIKIIRETEEESEVVPNLMIGFGIDEVQAEYVAEIKLRH 444

Query: 439 LRKLEEYQIKSELDNLLAEKE--KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           L +  EY +K   D    EKE  +++ +L S K+    I  E+ +V + + +      R+
Sbjct: 445 LNR--EYILKRTADTERLEKEIAELEEILGSEKKLKQVIISELNDVIKNYGQ-----ERK 497

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIAL 555
           T F   S  ++   ++ + +  P  + IS  G+ +     S+ +++    KEGD +   +
Sbjct: 498 TQFFYQSDIEEVEEEEEIEDY-PCKLFISESGYFKKCTMQSLRMASDQKLKEGDRMMAEI 556

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV--YDST 611
            +     +L  S     Y   A    + +    G+ I  ++  +  +   +A V   D +
Sbjct: 557 ESSNRAELLFFSDKAAVYKAKASRFGNTKASDLGDYIPAVLGFDSGEGF-SAMVETMDYS 615

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV---GEN 667
             LL V   G A  V  +     T + K  L  +  EK  LV  +   D+  V+      
Sbjct: 616 GYLLFVYDNGKAAKVPLNAYETKTNRKK--LSNAYCEKAGLVTILKLNDNAQVMLRTTNG 673

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           R LL  +   +P+ +R  +GV++ + K
Sbjct: 674 RALLFDTALLLPKTTRNTQGVQVMTLK 700


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/211 (56%), Positives = 164/211 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSA
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA RYTEARM
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            E+ +  L L+D+ + S+E L+++I GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNPPQVL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQIL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 GISDLRDESDREGMRMVIDLK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQIL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/223 (52%), Positives = 167/223 (74%), Gaps = 1/223 (0%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ + 
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETS 179

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/308 (43%), Positives = 198/308 (64%), Gaps = 8/308 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    
Sbjct: 1   MSEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++  E  L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSI
Sbjct: 121 EARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +    I+ E+L+EYI GPDFPTGG+++ +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGGLVI-NKKDLLNIYSSGTGKLK 239

Query: 252 VRARWCVEEV-GRGSW-CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E    RG    +V++EIPY +     S+ +     LI  K    + DI +ES+
Sbjct: 240 LRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESS 299

Query: 307 ED-VRIVL 313
           +D +RIVL
Sbjct: 300 KDGIRIVL 307


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/313 (44%), Positives = 209/313 (66%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL E
Sbjct: 297 AKNTLIERFSLGE 309


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 210/313 (67%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNHPQIL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR     + 
Sbjct: 237 NLKQVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/380 (38%), Positives = 219/380 (57%), Gaps = 34/380 (8%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ L    +F+K AR+VGEV+GK HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG+
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +DGD  AA RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEI 179

Query: 240 VESYRLGRGGFRVRARWCVE-----------------------EVGR-------GSWCIV 269
             +Y+ GRG   +R R+ +E                       E  R           +V
Sbjct: 180 PGAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLV 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMES 328
           +TE+PY V KS +++ IA++I  K +  +  +RDES    +R+VL  + R  D   ++  
Sbjct: 240 ITELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLR-RDADAHTILTL 298

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +   ++++   P+++  L  G  P    L  +L  W+A R   L R  +        R  
Sbjct: 299 LLKHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSH 358

Query: 389 ILKGLLIAYLNIDEIIAIIR 408
           +L+GLL A   +D+++  +R
Sbjct: 359 LLEGLLRAVSLMDDVVQTVR 378


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 209/313 (66%), Gaps = 8/313 (2%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 GISDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQIL 236

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++   ++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+      
Sbjct: 237 NLKQVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 296

Query: 413 PKPVMVSRFSLTE 425
            K  ++ RFSL+E
Sbjct: 297 AKNTLIERFSLSE 309


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 118/148 (79%), Positives = 128/148 (86%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 158/217 (72%), Gaps = 1/217 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM E G  +     KS+RIVG+V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+ID D  AA RYTE+R+T+VA  +L+ +D++ VDF+D Y+  + EP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E + GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           FPTGGI++  R  I  +Y  GRG   +R R  +E  G
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVEIERRG 216


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  257 bits (656), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  257 bits (656), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+DN + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 165/219 (75%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGII
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 226


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I+VTE+PYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/606 (29%), Positives = 314/606 (51%), Gaps = 42/606 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA + G+V+ K
Sbjct: 12  IENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSANVAGQVM-K 67

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEARMTQVAELI 143
           LHPHG  S Y S+V + Q      P++ G+GNFG         AA RY+E ++++++  +
Sbjct: 68  LHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVKLSEISIDM 125

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           +Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS N++E+ EA 
Sbjct: 126 MQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFNLKELTEAI 185

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +  I+  E       + ++ PDF TGG+IV+      +    GRG  ++R +    E+ +
Sbjct: 186 VKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK---AEIVK 235

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++     R+ D +
Sbjct: 236 NE--IHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITITARRNTDMN 293

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +L+E ++  + +++ F  NMN+L +  +P+V+ +   + +WL  R   + R  S  ++ +
Sbjct: 294 VLLEKLYKFTPLQSTFSANMNML-VDDLPKVLGVWQTIDKWLEWRTTCIKRGLSHDIETM 352

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR--NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R++ +L+GL    L+IDE I IIR  ++D+ +P +   F +   Q   + N++LR++ +
Sbjct: 353 TRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVANMKLRNINR 412

Query: 442 LEEYQIKS--ELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTT 498
             EY IK   ++D      E    ++ S + + NQI  + + E KE + K      RRT 
Sbjct: 413 --EYIIKKIEDIDKFEKTIENYKMIVKS-QDKINQIIIKGLNETKEKYGKE-----RRTK 464

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E++      L +  +    +T+ ++  G+    K +       + K GD +       
Sbjct: 465 IVELTEVKPVRLVEE-VPNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVLKVFETE 519

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               IL+  +D   + +   ++   R +  G  +  +I  + N  IV+  + DST K ++
Sbjct: 520 NKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIR-DKNITIVSYSILDSTHKFII 578

Query: 617 VSSKGN 622
            +   N
Sbjct: 579 AAYSNN 584


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 175/529 (33%), Positives = 282/529 (53%), Gaps = 59/529 (11%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT
Sbjct: 2   RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG 
Sbjct: 62  NIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGR 120

Query: 250 FRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
             +RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +
Sbjct: 121 IYMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDK 180

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R   P++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ H
Sbjct: 181 DGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRH 239

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P              
Sbjct: 240 RREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWES 299

Query: 417 -----MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                MV R                     + L+  Q  AIL LRL  L  LE  ++  E
Sbjct: 300 SAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGE 359

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   + +R D  TL
Sbjct: 360 YQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTL 412

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
              + E+E + V IS+ G+ ++         +      SA   K+ D +   L A++   
Sbjct: 413 GDLITEEERV-VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTT 471

Query: 563 ILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           +L+ S+ GK Y L    +   S    G  +  L+ L+  + I T    D
Sbjct: 472 LLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVD 520


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 156/211 (73%), Gaps = 1/211 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C AA+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           ++  R  I  +Y  GRG   +R +  +E+ G
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRG 210


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I+VTE+PYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 131/294 (44%), Positives = 194/294 (65%), Gaps = 7/294 (2%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      +KSARIVG+ +GK
Sbjct: 14  MQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE +  
Sbjct: 74  YHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +  +A
Sbjct: 134 KDLDKTVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDTVMA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-- 263
            IDNPE + ++LL+ + GPDFPTGGII  ++  ++  Y  G G  ++RA+  VE   R  
Sbjct: 194 YIDNPECTTKELLDILHGPDFPTGGIIA-NKSDLLNIYETGSGRIKLRAKLEVELGKRRV 252

Query: 264 GSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313
               ++++EIPY +  +   + +  IA+L+ +K++  + DI ++S  E +RIVL
Sbjct: 253 DKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGIRIVL 306


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+D+ + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 155/198 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFPT 228
           +ISIE L+E+I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/213 (55%), Positives = 161/213 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            +  L L+D+ + S+E+++++I GPDFPTGGII
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 153/197 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+
Sbjct: 122 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDD 181

Query: 210 PEISIEKLLEYIIGPDF 226
            +ISIE L+E+I GPDF
Sbjct: 182 EDISIEGLMEHIPGPDF 198


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 153/197 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+
Sbjct: 122 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDD 181

Query: 210 PEISIEKLLEYIIGPDF 226
            +ISIE L+E+I GPDF
Sbjct: 182 EDISIEGLMEHIPGPDF 198


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 154/199 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L+ ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 213 SIEKLLEYIIGPDFPTGGI 231
           SIE L+E+I GPDFPT  I
Sbjct: 181 SIEGLMEHIPGPDFPTAAI 199


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 161/214 (75%), Gaps = 1/214 (0%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ 
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE
Sbjct: 121 DGVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEE 179

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
              G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 180 TSSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 161/214 (75%), Gaps = 1/214 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
             G   I++TEIPYQV K+RLIEKIA+L+  K+I
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKI 213


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/211 (54%), Positives = 155/211 (73%), Gaps = 1/211 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF++TY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           ++  R  I  +Y  GRG   +R +  +E+ G
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRG 210


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+E+I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 153/211 (72%), Gaps = 1/211 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D++ VDF+DTY+   SEP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           ++  R  I  +Y  GRG   +R R  +E  G
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGRVNIEARG 210


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 178/606 (29%), Positives = 312/606 (51%), Gaps = 42/606 (6%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA + G+V+ K
Sbjct: 12  IENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSANVAGQVM-K 67

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEARMTQVAELI 143
           LHPHG  S Y S+V + Q      P++ G+GNFG         AA RY+E ++++++  +
Sbjct: 68  LHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVKLSEISIDM 125

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           +Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS N++E+ EA 
Sbjct: 126 MQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFNLKELTEAI 185

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +  I+  E       + ++ PDF TGG+IV+      +    GRG  ++R +    E+ +
Sbjct: 186 VKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK---AEIVK 235

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++     R+ D +
Sbjct: 236 NE--IHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITITARRNTDMN 293

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +L+E ++  + +++ F  NMN+L +  +P+V+ +   + +WL  R   + R  S  ++ +
Sbjct: 294 VLLEKLYKFTPLQSTFSANMNML-VDDLPKVLGVWQTIDKWLEWRTTCIKRGLSHDIETM 352

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR--NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R++ +L+GL    L+IDE I IIR  + D+ +  +   F +   Q   + N++LR++ +
Sbjct: 353 TRKLHLLQGLEKVLLDIDEAIEIIRRSSRDQIERNLQKHFGIDFEQAKEVANMKLRNINR 412

Query: 442 LEEYQIKS--ELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTT 498
             EY IK   ++D      E    ++ S + + NQI  + + E KE + K      RRT 
Sbjct: 413 --EYIIKKIEDIDKFEKTIENYKMIVKS-QDKINQIIIKGLNETKEKYGKE-----RRTK 464

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
             E++      L +  +    +T+ ++  G+    K +       + K GD +       
Sbjct: 465 IAELTEVKPVRLVEE-VPNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVLKVFETE 519

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               IL+  +D   + +   ++   R +  G  +  +I  + N  IV+  + DST K ++
Sbjct: 520 NKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIR-DKNITIVSYSILDSTHKFII 578

Query: 617 VSSKGN 622
            +   N
Sbjct: 579 AAYSNN 584


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 153/197 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+
Sbjct: 122 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDD 181

Query: 210 PEISIEKLLEYIIGPDF 226
            +ISIE L+E+I GPDF
Sbjct: 182 EDISIEGLMEHIPGPDF 198


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 161/214 (75%), Gaps = 1/214 (0%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ 
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE
Sbjct: 121 DGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEE 179

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
              G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 180 TSSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 151/194 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 112/213 (52%), Positives = 155/213 (72%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ + +    KKSA
Sbjct: 15  IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  AA RYTEA+M
Sbjct: 75  RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
            E+ +  +A+  NPEI+  +L++ I GPDFPTG
Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 153/196 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDF 226
           +ISIE L+E+I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 152/197 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+
Sbjct: 122 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDD 181

Query: 210 PEISIEKLLEYIIGPDF 226
            +ISIE L+E+I GPDF
Sbjct: 182 EDISIEGLMEHIPGPDF 198


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 1/234 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L 
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+A
Sbjct: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           LID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E
Sbjct: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 167/225 (74%), Gaps = 2/225 (0%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERII 179

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +R+V+
Sbjct: 180 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVI 224


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 152/195 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 4   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 63

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 64  GDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 123

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+
Sbjct: 124 ETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD 183

Query: 210 PEISIEKLLEYIIGP 224
            +ISIE L+E+I GP
Sbjct: 184 EDISIEGLMEHIPGP 198


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 155/204 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEY 220
            E+    LA ID+ +ISIE L+E+
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEH 211


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 127/148 (85%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMGL   ++FKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD+AAAYRYTEA+MT+VA L+L+G   DAVDFR TYNEED EP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 159/213 (74%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   + A+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLPAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 175/565 (30%), Positives = 298/565 (52%), Gaps = 41/565 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T++A  +L  +D++ VD ++ ++    EP V P+KFPNL+ NG SGIAVG++T+I
Sbjct: 534  TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI++   E IV+ Y  GRG   
Sbjct: 594  PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
            V+ +  +E +      I++ EIPYQV K  LI++IAEL+   +   + D+RDES  D +R
Sbjct: 654  VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            IV+  K R  DP+ +++ ++  + ++   P+N+ VL +G+ P+ + L G+L+E++ HR +
Sbjct: 714  IVVELK-READPEKVLKKLYRRTQLQKSIPINLTVL-VGKQPKTVDLKGLLQEFIKHRVD 771

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
            V+ RR+ F ++  + R+ I++GLL A  N D +I I+R+       +  +V  F L++ Q
Sbjct: 772  VITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDTQ 831

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              AIL++RL     LE  ++  E D+L  + E+   +L+S ++   +I   I E+ E+  
Sbjct: 832  AQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEE---KIRVFIEEIDELLE 888

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
            K  D   R+T   E   A          E+  I  V+S+ G I + +          F  
Sbjct: 889  KFGD--ERKTVIVEEKEAG------LTFEEHYILAVLSS-GRILNRRIDDDADKKDIFQK 939

Query: 546  ---------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                     K G+ L       ++  I  ++  GKAY     +L  G G        I++
Sbjct: 940  VMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADLPKGEGR-------INI 992

Query: 597  NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            +  + + TAF  +     L + +K         E I    +  + + ++ ++   +V   
Sbjct: 993  DEGEIVGTAFKGEGEEDRLFILTKNGIIKRMSYEDIFYKSQNHSIIPLAEDD--CVVTAF 1050

Query: 657  TGDHVAVVG-ENRK--LLIFSIDQI 678
              DH +++G   RK  LL+F  +Q+
Sbjct: 1051 ADDHPSLIGVYTRKGDLLLFERNQV 1075



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 88/119 (73%), Gaps = 9/119 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +EE VK+          YL YA+S I  RAIPD+RDG KPV RRI++AM+E+GL     +
Sbjct: 9   IEEEVKSA---------YLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPY 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KKSAR+VGEV+GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RY
Sbjct: 60  KKSARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRY 118


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 119/224 (53%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 155/204 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEY 220
            E+    LA ID+ +ISIE L+E+
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEH 211


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 259/470 (55%), Gaps = 14/470 (2%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  +V     + E    GRG F VR    V+    G  C V+
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGRGQFTVRGTVTVD----GKNC-VI 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V  + + E+I  L+ +  +  + D+ D  +    +RIV+  K R  + + + E 
Sbjct: 259 TELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAK-RGHNAEQIREQ 317

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L+ R +V+  RS +R++ +  R  
Sbjct: 318 LLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL++ +L+ID  +A+IR     D+ +  +  RF++   Q D +L L+LR L KL+  
Sbjct: 378 LVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRFAIDAVQADYVLALQLRRLTKLDVI 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++++E + L AE  ++  L+++   +   I  E+ E  ++F K  +  RR
Sbjct: 438 ELQAEAERLDAEFAELTELVSNPDARRVVIDKELVETAKLF-KGPEFDRR 486


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 149/192 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 2   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 62  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+ +I
Sbjct: 122 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDEDI 181

Query: 213 SIEKLLEYIIGP 224
           SIE L+E+I GP
Sbjct: 182 SIEGLMEHIPGP 193


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 258/470 (54%), Gaps = 14/470 (2%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  +V     + E    GRG F VR    V+    G  C VV
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGRGQFTVRGTVTVD----GKNC-VV 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V  + + E+I  L+ +  +  + D+ D  +    +RIV+  K R    + + E 
Sbjct: 259 TELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAK-RGHSAEQIREQ 317

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L+ R +V+  RS +R++ +  R  
Sbjct: 318 LLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL++ +L+ID  +A+IR     D+ +  +  RF++   Q D +L L+LR L KL+  
Sbjct: 378 LVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRFAIDAVQADYVLALQLRRLTKLDVI 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++++E + L AE  ++  L+++   +   I  E+ E  ++F K  +  RR
Sbjct: 438 ELQAEAERLDAEFAELTELVSNPDARRVVIDKELVETAKLF-KGPEFDRR 486


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 280/498 (56%), Gaps = 43/498 (8%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT IP HN+ E+ EA L LI
Sbjct: 1   DKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLI 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG  R+RA+  +E   +    
Sbjct: 61  DTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGRVRIRAKHHIETKAK-KEI 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326
           IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  E +R+V+  K  ++  ++++
Sbjct: 119 IVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAM-SEIVL 177

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            +++  + MET F + + +    + P+V  L  IL  +L+HR+ V+ RR+ F ++    R
Sbjct: 178 NNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKAR 236

Query: 387 VEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+  Q  AIL++RL  L  L+
Sbjct: 237 AHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQ 296

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++++E   L+    +++++L S ++    I  E+ E+KE FS        R T  E S
Sbjct: 297 RDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSND------RKTEIEDS 350

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH----- 558
             D+  ++  +I  EP+ V I++ G+++ +   + +      K G   K+A+  H     
Sbjct: 351 -YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ----KRGGKGKVAVTTHDDDFI 404

Query: 559 -------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ---DIV 603
                  T D ++ ++  G     K Y +P G+ ++    G+A+  LI+L  ++   +I+
Sbjct: 405 ERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGKAVVNLINLRPDEKIMEII 461

Query: 604 TAFVYDSTCKLLVVSSKG 621
               +D +  L+  +  G
Sbjct: 462 PTPDFDESKSLVFFTRNG 479


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 256/467 (54%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA    +DN E   E  L    E + GPDFPT G+IV S + I ++Y  GR
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGS-QGIHDAYTTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    +EE  RG   IV+TE+PYQV     I  IAE +   R+  + +I D+S++
Sbjct: 670  GSIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSD 729

Query: 308  DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V  RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 730  RVGLRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 788  AHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+   
Sbjct: 848  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL--- 904

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             EI  K  D  R R     +  AD     + +I +E + V I+  G+         RS K
Sbjct: 905  TEIVDKHGDDRRTR-----IVAADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++    + T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 149/194 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 182

Query: 200 CEAALALIDNPEIS 213
               LA +DN +IS
Sbjct: 183 INGCLAYVDNEDIS 196


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 253/470 (53%), Gaps = 14/470 (2%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS++I   V G LHPHG
Sbjct: 29  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKICSAVTGNLHPHG 88

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 89  GASMYGAAALMAAEF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDNH 147

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP   P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 148 AVPMVPTFDGEWTEPTWLPARWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 207

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  +V     + E    GRG F VR    V+    G  CI V
Sbjct: 208 NMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGRGQFTVRGTVSVD----GKNCI-V 261

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V  + + ++I  L+ +  +  + D+ D  +    +RIV+  K R    + + E 
Sbjct: 262 TELPPGVASNTVQDRIRALVESGELSGVADMSDLTDRRNGLRIVVTAK-RGHSAEQIREQ 320

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L  R  V+ RRS +R++ +  R  
Sbjct: 321 LLALTPLESTFAASLVALDENRVPRWWSVRELISAFLHLRDSVVVRRSEYRLEKVTARRH 380

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+  +L+ID  +A+IR     D+ +  +  RF +   Q D +L L+LR L KL+  
Sbjct: 381 LVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQERFGIDAEQADYVLALQLRRLTKLDVI 440

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++++E + L AE  ++  L+ +   +   I  E+ E  ++F K  +  RR
Sbjct: 441 ELQAEAEKLDAEFAELTELVANPDARRKVIDEELVETAKLF-KGPEFDRR 489


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ    RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/485 (31%), Positives = 263/485 (54%), Gaps = 17/485 (3%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 29  LTFALYSVSDRAIPSAYDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 88

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +++ 
Sbjct: 89  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELNDH 147

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E  EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 148 AVPMVPTFDGEWVEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 207

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L + I GPD+ +G  +V +   + E    GRG F VR    VE    G  CI +
Sbjct: 208 NMTDDRLCKLIPGPDWGSGASVVGT-AGLREYITTGRGHFTVRGTISVE----GKNCI-I 261

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V  + + ++I  L+ +  +  + D+ D  +    +RIV+  K R  + + + + 
Sbjct: 262 TELPPGVASNTVQDRIRALVESGEMSGVADMSDLTDRRNGLRIVVTAK-RGHNAEQIRDQ 320

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L  R  V+  RS +R++ +  R  
Sbjct: 321 LLALTPLESTFAASLVALDENRVPRWWSVRDLIMAFLQLRDSVVLHRSEYRLEKVTARRH 380

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+  +L+ID  +A+IR     D+ +  +  RF +   Q D +L+L+LR L KL+  
Sbjct: 381 LVAGLMKIHLDIDAAVAVIRGSETVDEARKGLQERFKIDAEQADYVLSLQLRRLTKLDVI 440

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT---TFCEV 502
           ++++E + L AE  +++ L+ + + +   I  E+ E  ++F K  +  RR         V
Sbjct: 441 ELQAEAEKLDAEFAELNDLVTNPESRRKVIDKELVETAKLF-KGPEYDRRTVLDFDATPV 499

Query: 503 SRADK 507
           SR D+
Sbjct: 500 SRGDE 504


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L++ I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMDIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 108/186 (58%), Positives = 147/186 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S    RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEY 220
           ++L+EY
Sbjct: 181 QELMEY 186


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TE+PYQV K+RLIEKIA+L+  K+I    D+RDES  + +RIV+
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 166/224 (74%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/192 (56%), Positives = 148/192 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIEN 182

Query: 210 PEISIEKLLEYI 221
            +++I++L+ YI
Sbjct: 183 GDLTIDELMTYI 194


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R    ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGXRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 256/467 (54%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA    +DN E   E  L    E + GPDFPT G+IV S + I ++Y  GR
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGS-QGIHDAYTTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++
Sbjct: 670  GSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 729

Query: 308  DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V  RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 730  RVGLRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 788  AHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+   
Sbjct: 848  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIVHDEL--- 904

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             EI  K  D   RRT    +  AD     + +I +E + V I+  G+         RS K
Sbjct: 905  SEIVDKHGD--ERRT---RIIAADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  DRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 159/236 (67%), Gaps = 2/236 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E +  V ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL    A 
Sbjct: 15  VNEKIVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMADMGLRPDRAH 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVRL+Q F  R PL+ G GNFG +D D  AA RYT
Sbjct: 75  VKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD-DGPAASRYT 133

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +  G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 134 EARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASGIAVGMATNMA 193

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            HN+ E+  AA  L+ +P+  +E L+ ++ GPD PTGG IV   + + ++YR GRG
Sbjct: 194 PHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRG 248


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 160/215 (74%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 149/194 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ID+ +IS
Sbjct: 183 INGCLAYIDDEDIS 196


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 146/192 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VRL Q F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIEN 182

Query: 210 PEISIEKLLEYI 221
             ++I++L+ YI
Sbjct: 183 GNLTIDELMTYI 194


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 267/508 (52%), Gaps = 65/508 (12%)

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           T  II   R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKI
Sbjct: 61  TAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKI 119

Query: 287 AELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           AEL+  KR+  +  +RDES +D +RIV+  K  ++  ++++ +++  + ++  F +NM  
Sbjct: 120 AELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVSFGINMVA 178

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           L  G+ P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II 
Sbjct: 179 LHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIE 237

Query: 406 IIRNEDKP---KPVMVSR----------------------------------FSLTENQV 428
           +IR+   P   K  +V+                                   + LTE Q 
Sbjct: 238 LIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 297

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E F  
Sbjct: 298 QAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF-- 355

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDL 540
               G +R T    + AD     + +I +E + V +S++G+++        + +      
Sbjct: 356 ----GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGK 409

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNH 598
           SA   KE D +   L A+T D IL  S+ G+ Y++    L    RG  G  I  L+ L  
Sbjct: 410 SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQ 469

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGN 622
           ++ I TA +    ++   K+ + ++ G 
Sbjct: 470 DERI-TAILPVTEFEEGVKVFMATANGT 496


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 255/470 (54%), Gaps = 14/470 (2%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M E  L  G   +KS++I   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  ++ + + + E    GRG F VR    V+    G  CI +
Sbjct: 205 NMTDDRLVKLIPGPDWGCGASVIGT-DGLREYITTGRGLFTVRGTVSVD----GKNCI-I 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V    + ++I  L+ +  +  + D+ D  +    +RIV+  K R    + + + 
Sbjct: 259 TELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAK-RGHSAEQIRDQ 317

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L+ R  V+  RS +R++ +  R  
Sbjct: 318 LLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLEKVTARRH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+  +L+ID  +AIIR  D     +  +  RF++   Q D +L L+LR L KL+  
Sbjct: 378 LVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERFAIDAVQADYVLALQLRRLTKLDVI 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++++E + L AE   +  L+++   +   I  E+ E  ++F K  +  RR
Sbjct: 438 ELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVETAKLF-KGPEYDRR 486


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 153/470 (32%), Positives = 255/470 (54%), Gaps = 14/470 (2%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M E  L  G   +KS++I   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  ++ + + + E    GRG F VR    V+    G  CI +
Sbjct: 205 NMTDDRLVKLIPGPDWGCGASVIGT-DGLREYITTGRGLFTVRGTVSVD----GKNCI-I 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLMES 328
           TE+P  V    + ++I  L+ +  +  + D+ D  +    +RIV+  K R    + + + 
Sbjct: 259 TELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAK-RGHSAEQIRDQ 317

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +  L+ +E+ F  ++  L   RVP+   +  ++  +L+ R  V+  RS +R++ +  R  
Sbjct: 318 LLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLEKVTARRH 377

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GL+  +L+ID  +AIIR  D     +  +  RF++   Q D +L L+LR L KL+  
Sbjct: 378 LVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERFAIDAVQADYVLALQLRRLTKLDVI 437

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           ++++E + L AE   +  L+++   +   I  E+ E  ++F K  +  RR
Sbjct: 438 ELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVETAKLF-KGPEYDRR 486


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 149/194 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ++N +IS
Sbjct: 183 INGCLAYVENEDIS 196


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 148/194 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 63  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ID+ +IS
Sbjct: 183 INGCLAYIDDEDIS 196


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 118/278 (42%), Positives = 189/278 (67%), Gaps = 1/278 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI EA +  +DNP  + + +++ + GPDFPT G I++  + I ++Y+ G+G   VR
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPT-GGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           ++  +E++  G   I + EIPY+V K+ L++++ EL I
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRI 281


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 252/456 (55%), Gaps = 33/456 (7%)

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 104 MLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVD 163

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
               LI NPE ++++LLEY+ GPDFPTGG+I+     I+E+YR GRG   VR +  VE +
Sbjct: 164 VLCVLIRNPEATLQELLEYMPGPDFPTGGLIM-GNIGILEAYRTGRGRIIVRGKTEVELL 222

Query: 262 GRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
              +    +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES      ++    R 
Sbjct: 223 DSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRG 282

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            DP +++  ++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  V+ RR+ F+
Sbjct: 283 SDPSIVLNKLYRLTALQSSFSCNMIGILDGQ-PKLMGLKELLQAFLDFRCSVVERRARFK 341

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFSLTENQVDAILNL 434
           +     R  I++G+++   N+D +I +I+  + P   M S      F L+E Q +AIL++
Sbjct: 342 LSQAQERRHIVEGIVVGLDNLDAVIRVIK--EAPSNAMASTGLRNEFGLSERQAEAILDI 399

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            LR + +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  FS       
Sbjct: 400 SLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTP----- 454

Query: 495 RRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHF 545
           RR+    +   D   L+   +I  E + + +S +G+++ +K ++ +L        S    
Sbjct: 455 RRSM---LEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKL 511

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
           +  D++   +  H  D +L  S  G     +AY +P
Sbjct: 512 RVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIP 547


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 254/467 (54%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 550  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 609

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ +A    +DN     E ++  ++E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 610  PPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAGLIVGS-QGIADAYKTGR 668

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ +E
Sbjct: 669  GSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGSE 728

Query: 308  --DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               VRIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 729  RVGVRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYV 786

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 787  EHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 846

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+   
Sbjct: 847  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRGIVRDEL--- 903

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             EI  K  D  R R     +  AD     + +I +E + V I+  G+         RS K
Sbjct: 904  GEIVDKHGDDRRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 958

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D +       T D IL  +T G     KAY LP
Sbjct: 959  RGGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYELP 1005



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 13  ERIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 73  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 129


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  239 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 147/192 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALIEN 182

Query: 210 PEISIEKLLEYI 221
            + +I++L+ YI
Sbjct: 183 GDRTIDELMTYI 194


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 148/194 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 63  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ID+ +IS
Sbjct: 183 INGCLAYIDDEDIS 196


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 165/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            E+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 PELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+V
Sbjct: 3   VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ID+  IS
Sbjct: 183 VNGCLAYIDDENIS 196


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 145/192 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+ GIAVGMAT+IP HN+ EI     ALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALIEN 182

Query: 210 PEISIEKLLEYI 221
             ++I++L+ YI
Sbjct: 183 GNLTIDELMTYI 194


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 106/200 (53%), Positives = 153/200 (76%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEICEAALALIDNPEISI 214
           ++ E+ +  LAL  NPEI+I
Sbjct: 187 HLGEVIDGVLALSHNPEITI 206


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/224 (51%), Positives = 166/224 (74%), Gaps = 3/224 (1%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM++++  +++ +++D
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP H + E+ +  LAL  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG   +RA+  +EE   G   I+V
Sbjct: 121 DISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLRAKTEIEE-HHGKQRIIV 178

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
            EIPYQV K++LIEKIAEL+  K+I  + D+RDES  + +RIV+
Sbjct: 179 HEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +E    G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+ LIEKIA+L+  K+I  + D+RDES  +   ++F
Sbjct: 180 TEIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGMPIVF 223


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/285 (44%), Positives = 192/285 (67%), Gaps = 5/285 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+ L  +L  
Sbjct: 179 SDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVLNLKQVLVH 236

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 YINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIR 281


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 255/466 (54%), Gaps = 28/466 (6%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA    +DN     E +++ + E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 612  PPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYGLIVGS-QGIDDTYKTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++
Sbjct: 671  GSIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSSD 730

Query: 308  DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V  RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 731  RVGLRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRHYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        +  ++    
Sbjct: 789  NHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q    A    E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQR---AIVHDEL 905

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
            KEI  K  D  R R     +  AD     + +I +E + V I+  G+         RS K
Sbjct: 906  KEIVDKYGDDRRTR-----IIPADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                 +     K+ D +       T D IL  +T G+ Y   A +L
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDL 1006



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 80/117 (68%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G        K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRGHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 159/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 147/194 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 3   VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 63  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEV 182

Query: 200 CEAALALIDNPEIS 213
               LA +D+ +IS
Sbjct: 183 INGCLAYVDDEDIS 196


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/224 (50%), Positives = 164/224 (73%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V  ++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  + +RIV+
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 148/195 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 182

Query: 210 PEISIEKLLEYIIGP 224
            + S+E+++++I GP
Sbjct: 183 KDASLEEIMQFIKGP 197


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 108/192 (56%), Positives = 145/192 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L  GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALIEN 182

Query: 210 PEISIEKLLEYI 221
            + +I++L+ YI
Sbjct: 183 GDRTIDELMTYI 194


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 39/515 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 611

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ +A    ++N     E ++  ++E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 612  PPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGS-QGIEDTYKTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S++
Sbjct: 671  GSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 308  DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V  RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 731  RVGLRIVVELK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 789  EHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVRDELKEI 908

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             + +        RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 909  ADKYGDD-----RRTRIVP---ADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589
                 +     K+ D +       T D IL  +T G     KAY LP     S    G+ 
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEA---SRTARGQH 1017

Query: 590  IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621
            +  L+    N+ I        Y+    L++ +  G
Sbjct: 1018 VANLLAFQPNERIAQVIQIKSYEDAPYLVLATRNG 1052



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 80/117 (68%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G        K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRGHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 126/285 (44%), Positives = 192/285 (67%), Gaps = 5/285 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  
Sbjct: 179 SDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVH 236

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 YINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIR 281


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 146/188 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +V D++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 149/195 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            ++S+E+++++I GP
Sbjct: 183 KDVSLEEIMQFIKGP 197


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 158/215 (73%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           TE+PYQV  ++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 TELPYQVNNAKLIEKIADLVRDKKIEGITDLRDES 214


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  236 bits (603), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 149/195 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            ++S+E+++++I GP
Sbjct: 183 KDVSLEEIMQFIKGP 197


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 145/192 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALID 208
            E+    LA ID
Sbjct: 188 TEVINGCLAYID 199


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 148/211 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      +KSARIVG+ +GK
Sbjct: 14  MQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRKSARIVGDTMGK 73

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYTEAR+ + AE +  
Sbjct: 74  YHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARLEKFAEEVYL 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN+ E+ +   A
Sbjct: 134 KDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHNLGEVVDTVQA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            IDNPE+  E+LL ++ GPDFPTGGII   R
Sbjct: 194 FIDNPELRTEELLGHLHGPDFPTGGIIATKR 224


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/284 (44%), Positives = 191/284 (67%), Gaps = 5/284 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  +
Sbjct: 179 DREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHY 236

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIR 280


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPDF 226
           + L++++ GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/284 (44%), Positives = 191/284 (67%), Gaps = 5/284 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+ L  +L  +
Sbjct: 179 DREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVLNLKQVLVHY 236

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 INFQKDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIR 280


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 148/195 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            + S+E+++++I GP
Sbjct: 183 KDTSLEEIMQFIKGP 197


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 255/466 (54%), Gaps = 28/466 (6%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 192  PSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++E+ EA    ++N     E ++E + E + GPDFPT G+IV S + I ++Y  GR
Sbjct: 612  PPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHGLIVGS-QGISDTYTTGR 670

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++
Sbjct: 671  GSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 308  DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V  RIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 731  RVGLRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR        +  ++    
Sbjct: 789  NHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRAIVHDELKEL 908

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             + +        RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 909  VDKYGDD-----RRTRIIP---ADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                 +     K+ D +       T D IL  +T G+ Y   A +L
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDL 1006



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 80/117 (68%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G        K
Sbjct: 14  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRGHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 148/195 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            + S+E+++++I GP
Sbjct: 183 KDTSLEEIMQFIKGP 197


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 146/192 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ A++E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 63  GDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI+N
Sbjct: 123 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALIEN 182

Query: 210 PEISIEKLLEYI 221
            + +I++L+ YI
Sbjct: 183 GDRTIDELMTYI 194


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 148/195 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            + S+E+++++I GP
Sbjct: 183 KDASLEEIMQFIKGP 197


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHG+ +VY
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 216 KLLEYIIGPDFP 227
            L++++ GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/284 (44%), Positives = 191/284 (67%), Gaps = 5/284 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  +
Sbjct: 179 DREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHY 236

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 VNFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIR 280


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/284 (44%), Positives = 191/284 (67%), Gaps = 5/284 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  +
Sbjct: 179 DREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHY 236

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR
Sbjct: 237 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIR 280


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/477 (34%), Positives = 256/477 (53%), Gaps = 33/477 (6%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 562  TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 621

Query: 192  PSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I ++YR GR
Sbjct: 622  PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQAGIQDAYRTGR 680

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
            G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 681  GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 740

Query: 307  -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               +RIVL  K R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++
Sbjct: 741  RTGMRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYV 798

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    
Sbjct: 799  EHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLD 858

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q  +I  E  E+
Sbjct: 859  IDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQ-RRIVSE--EL 915

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             EI +K  D   RRT        D     + +I +E + V I+  G+         RS +
Sbjct: 916  GEIVAKWGD--DRRTKIVPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQR 970

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586
                 +S    ++ D +       T D IL  +  G     KAY LP  + ++   H
Sbjct: 971  RGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQH 1027



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + K
Sbjct: 25  DRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY  A
Sbjct: 85  CSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYCLA 144


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 148/195 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEKLLEYIIGP 224
            + S+E+++++I GP
Sbjct: 183 KDASLEEIMQFIKGP 197


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 145/194 (74%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSARIV
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM ++
Sbjct: 63  GDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 182

Query: 200 CEAALALIDNPEIS 213
               LA ID+ +IS
Sbjct: 183 ISGCLAYIDDEDIS 196


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 156/215 (72%), Gaps = 1/215 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            E+PYQV K+RLI KIA+L+  K+   + D RDES
Sbjct: 180 PELPYQVNKARLIXKIADLVRDKKXEGITDXRDES 214


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A    ++N +   E +L    E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ ++
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 308  --DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               VRIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 730  RVGVRIVIEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT    V   D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGDD-----RRTRIIAV---DGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|15826871|ref|NP_301134.1| DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A    ++N +   E +L    E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ ++
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 308  --DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               VRIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 730  RVGVRIVIEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT    V   D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGDD-----RRTRIIAV---DGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  233 bits (594), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 148/467 (31%), Positives = 253/467 (54%), Gaps = 34/467 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-AFKKSARIVGEVIG 84
           L + +L+YA   I  R + D RDG K V RRII +M E+   +   ++KK ARIVGEVIG
Sbjct: 168 LSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCARIVGEVIG 227

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELI 143
           K HPHGD+SVYD+L+RLAQ       LI+G GNFG+++ + AAA RYTEAR++    +++
Sbjct: 228 KYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEARISDFCYDVL 286

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  ++++ +D+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN+ ++  A+
Sbjct: 287 LDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNIVDVINAS 346

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE---- 259
           +  + N +I+ ++L   I GPDF TGGII+  ++++ + Y  G+G   +R+    E    
Sbjct: 347 INFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIYNTGKGNIVIRSNIFYEYAHN 406

Query: 260 ---------EVG---------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---LL 298
                    E+G         + S  +++  +P  V+ ++LIE I  ++  ++     +L
Sbjct: 407 NKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNKLIENIITVLNERKNEHDNIL 466

Query: 299 EDIRDESAED-VRIVLFPKNRSLDPDLLMESIFML--SDMETRFPLNMNVLSMGRVPQVM 355
             IRDES ++ +RIVL  +  S    +     F+L  + ME  +  N   +         
Sbjct: 467 SKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSMEIDYHCNFVCIGYENSYTQF 526

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDK 412
            L   L+ W  +R + + +    +   + + + I+   L     I +II+ +   +N ++
Sbjct: 527 SLKSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLTIQKKILDIISFLHKNQNIEQ 586

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            +  + S F L E+Q+  IL+++++ L  ++         NLL +++
Sbjct: 587 IQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIRKYNLLNKRQ 633


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A    ++N +   E +L    E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ ++
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 308  --DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               VRIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 730  RVGVRIVIEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT    V   D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGDD-----RRTRIIAV---DGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  233 bits (594), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 153/205 (74%), Gaps = 1/205 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRI 295
           TEIPYQV K+RLIEKIA+L+  K+I
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKI 204


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 33/467 (7%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 192  PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247
            P HN+ E+ +A    ++N +   E +L    E + GPDFPT G+IV S + I ++Y+ GR
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTGR 669

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ ++
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 308  --DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
               VRIV+  K R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 730  RVGVRIVIEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT    V   D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGDD-----RRTRIIAV---DGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
                 +     K+ D ++      T D IL  +T G     KAY LP
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 1006



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 81/117 (69%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  K
Sbjct: 14  QRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 74  SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 130


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1222

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/517 (30%), Positives = 267/517 (51%), Gaps = 36/517 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI+ S  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E
Sbjct: 159 NNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE 218

Query: 64  M--GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +  G+D    +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI G GNFG++
Sbjct: 219 INKGID-KKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSV 277

Query: 122 DGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + + AAA RYTEA+++    +++L  ++++ V++   ++  + EP V  SK P LL NG 
Sbjct: 278 EYN-AAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGC 336

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + +SIP HN+ ++    +  + N  I  ++L   I GPDF TGGII+   + + 
Sbjct: 337 SGIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILK 396

Query: 241 ESYRLGRGGFRVRARWCVE----------------------EVGRGSWCIVVTEIPYQVQ 278
             Y  G+G F +R+    E                      ++ + +  I++  +P  V+
Sbjct: 397 NIYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVK 456

Query: 279 KSRLIEKIAELIIAKRIP---LLEDIRDES-AEDVRIVLFPKNRSLDPDL--LMESIFML 332
            + LIE I  L+  K+     +L  IRDES  ED+RIVL  K  S    +   +  +F  
Sbjct: 457 PNELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKY 516

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           ++M+  +  N   +          L   +K W  +R + +      + + + +++ I+  
Sbjct: 517 TNMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDL 576

Query: 393 LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            LI    I +II      +N ++ +  + + F L   Q+  IL+++L+ L  ++     S
Sbjct: 577 YLIIQNKILDIITFFQKNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFIS 636

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           + + ++ + +  D ++N+ +   N I  E+  +K  +
Sbjct: 637 QRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKY 673


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 190/283 (67%), Gaps = 5/283 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  
Sbjct: 179 SDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVH 236

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I I
Sbjct: 237 YINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 279


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 149/197 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 1   SIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 61  RYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 121 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 180

Query: 205 ALIDNPEISIEKLLEYI 221
            L+D+ + S+E+++++I
Sbjct: 181 YLLDSKDASLEEIMQFI 197


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 190/283 (67%), Gaps = 5/283 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
             E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  +
Sbjct: 179 DREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHY 236

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I II
Sbjct: 237 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/177 (57%), Positives = 139/177 (78%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD  +Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+ +++D +DF D Y+ 
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
            + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 144/192 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 2   SIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 61

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 62  RYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 121

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 122 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 181

Query: 205 ALIDNPEISIEK 216
            L+DN + S+E+
Sbjct: 182 YLLDNKDASLEE 193


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 144/192 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 2   SIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 61

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 62  RYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 121

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 122 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 181

Query: 205 ALIDNPEISIEK 216
            L+DN + S+E+
Sbjct: 182 YLLDNKDASLEE 193


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 141/186 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 AHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEV 182

Query: 200 CEAALA 205
            +  LA
Sbjct: 183 IDGCLA 188


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
          Length = 1159

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 152/233 (65%), Gaps = 24/233 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL+YA+S I  RAIPD+RDG KPVHRRI++AM E+GL     FKK AR+VGEV+GK HPH
Sbjct: 132 YLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNKPFKKCARVVGEVLGKFHPH 191

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVD 148
           GD +VYDSLVR+AQPF  R  L+ G GNFG++D D AAA RYTE R+T+ A E +L  + 
Sbjct: 192 GDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMRYTECRLTRAAGEALLADIG 251

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D VD++ T++E                        VG+A++IP HN+ E+  A  ALI 
Sbjct: 252 PDTVDWQPTFDESQ----------------------VGLASNIPPHNLGEVVSALRALIT 289

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           +P ++ E+LL+++ GPDFPTGG +V   E +++ Y  GRG   VR +  +E V
Sbjct: 290 DPRVTTEELLKHVRGPDFPTGGEVVVGPE-LLQVYETGRGSVVVRGKATIERV 341



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 153/321 (47%), Gaps = 22/321 (6%)

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326
           +V+TE+PYQV KS L+  IAELI +K++    D+RDES    VR+V+  K +     +++
Sbjct: 399 VVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVK-KGYSGKVVL 457

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  + ++  F  N   L +   P  M L  +L  +L  R +V+ RRSS  ++A  +R
Sbjct: 458 AQLYNSTRLQVNFHYNCTSL-LNTKPLQMGLKDMLLAFLDFRCDVVQRRSSASLRAAQQR 516

Query: 387 VEILKG---LLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + +++G   LL     +D ++A +R  +     +  +V++  L+E Q +AIL L LR L 
Sbjct: 517 LHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHGLSEEQAEAILGLTLRRLT 576

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            LE  ++  E   L     ++  +L +       +  E   +   F +      RRT   
Sbjct: 577 GLEAAKLDQERRELQQSIARLGDILANRTTLLAVVEQEAEALAAAFPEP-----RRTALV 631

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLK 552
                      ++++  +P  V+ S RG++R L   S+          S +  + GD L 
Sbjct: 632 AAEDVPATPSLESLVPPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIRLRSGDQLA 691

Query: 553 IALHAHTTDRILLLSTDGKAY 573
             +     D +++++ DG+ +
Sbjct: 692 SLVAGSDRDLLMVVTPDGRMF 712


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 210 PEISIE 215
            + S+E
Sbjct: 181 KDASLE 186


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 161/244 (65%), Gaps = 7/244 (2%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 196 VQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++Y+ GRG  R
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSIR 179

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309
           +R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S++ V  
Sbjct: 180 MRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGL 239

Query: 310 RIVL 313
           RIV+
Sbjct: 240 RIVI 243


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 241/449 (53%), Gaps = 38/449 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA---AFKKSARIVGEV 82
           L + +L+YA   I  R + D RDG K V RRII +M E  ++ GA   ++KK ARIVGEV
Sbjct: 159 LSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE--INKGAEKRSYKKCARIVGEV 216

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-E 141
           IGK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++ + AAA RYTEA+++    +
Sbjct: 217 IGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEYN-AAAMRYTEAKISNFCYD 275

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  ++E+ V++   ++  + EP VF SK P LL NG SGIAV + ++IP HN+ ++  
Sbjct: 276 VLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNLVDVIN 335

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             ++ + NP I  + L   I GPDF TGGII+     +   Y  GRG   +R+   +E  
Sbjct: 336 CTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNVFLEYT 395

Query: 262 ----------------------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--- 296
                                  RGS  +V+  +P  V+ + LIE +  ++  K+     
Sbjct: 396 KDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKKNEHEN 455

Query: 297 LLEDIRDES-AEDVRIVL-FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +L+ IRDES  ED+RIVL   KN  ++  +  +  IF  + M+T +  N   +       
Sbjct: 456 ILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIGHQNSYT 515

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNE 410
              L   L+ W  +R + +    + + + + + + I+   ++    I EII+ +   +N 
Sbjct: 516 QFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFLQKNQNI 575

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++ K      F L + Q+  IL+++++ L
Sbjct: 576 EEIKNFFKKNFQLNDYQIQHILSMKIQKL 604


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 148/200 (74%), Gaps = 1/200 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELI 290
           TE+PYQV  ++LIEKIA+L+
Sbjct: 180 TELPYQVNXAKLIEKIADLV 199


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/491 (31%), Positives = 280/491 (57%), Gaps = 20/491 (4%)

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  AAA R TEA ++ +A  +L+ +D++ V+F  T N+   EPVV P+ FPNLL NG++G
Sbjct: 2   GTQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGSTG 61

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I+ G AT IP H++ E+ +A +  ID P  +++ LL  + GPDFPT G I++  + I ++
Sbjct: 62  ISAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPT-GGIIQGIDGIKKA 120

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G   +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++R
Sbjct: 121 YETGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVR 180

Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGI 360
           DE+    +RIV+  K + ++ + ++  ++  +D++   P N N++++  R P +M L  I
Sbjct: 181 DETDRTGLRIVVELK-KEVNAEGILNYLYKNTDLQ--IPYNFNMVAINNRRPTLMTLPKI 237

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVM 417
           L  ++ H++EV+ RRS + ++  + R  I++GL  A   +D++I  IR ++DK   K  +
Sbjct: 238 LDAYIGHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNL 297

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            ++F  TE Q +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  
Sbjct: 298 SAKFGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKT 357

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KS 535
           +++ VK+ +S       RR    E     K  + + MI +E + V ++  G+++    +S
Sbjct: 358 DLKRVKKTYSDD-----RRAIIEEQIEEIKIDV-EVMIPQEDVIVTVTKEGYVKRTGWRS 411

Query: 536 HSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
           H+  +      KEGD L      +TT+ +LL ++ G    LP   +  +  +  G+ +  
Sbjct: 412 HNASNGKDFGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVAN 471

Query: 593 LIDLNHNQDIV 603
           ++ L+ ++ I+
Sbjct: 472 IVSLDRDETII 482


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/466 (31%), Positives = 250/466 (53%), Gaps = 36/466 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM--GLDFGAAFKKSARIVGEVI 83
           L + +L+YA   I  R + D RDG K V RRII +M E+  G D   ++KK ARIVGEVI
Sbjct: 196 LSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGSD-RKSYKKCARIVGEVI 254

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-EL 142
           GK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++ + AAA RYTEAR++    ++
Sbjct: 255 GKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYN-AAAMRYTEARISDFCYDV 313

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  ++++ VD+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN+ ++  A
Sbjct: 314 LLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNLVDVINA 373

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV- 261
           ++  + N +I+ ++L   I GPDF TGGII+  ++++   Y  G+G   +R+    E V 
Sbjct: 374 SINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIYNTGKGSIVIRSNVFYEYVR 433

Query: 262 ---------------------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---L 297
                                 + S  +++  +P  V+ + LIE I  ++  ++     +
Sbjct: 434 NNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNELIENIVTVLNERKNEHDNI 493

Query: 298 LEDIRDESAED-VRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           L  IRDES ++ +RIVL  +  S    +   +  +F  + ME  +  N   +        
Sbjct: 494 LSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSMEINYHCNFVCIGYENSYTQ 553

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNED 411
             L   L+ W  +R + + +    +   + + + I+   L     I +II+ +   +N +
Sbjct: 554 FSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNIIDLYLTIQKKILDIISFLHKNQNIE 613

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           + +  + S F L E+Q+  IL+++++ L  ++      + +N++ +
Sbjct: 614 QIQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIQKNNIIKK 659


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/235 (44%), Positives = 162/235 (68%), Gaps = 1/235 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  +  S
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISLKRKLKRS 236


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/186 (58%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 2   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 62  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN
Sbjct: 122 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 181

Query: 210 PEISIE 215
            + S+E
Sbjct: 182 KDASLE 187


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 148/200 (74%), Gaps = 1/200 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELI 290
           TE+PYQV  ++LIEKIA+L+
Sbjct: 180 TELPYQVNXAKLIEKIADLV 199


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 146/194 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 9   SIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 68

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 69  RYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 128

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 129 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 188

Query: 205 ALIDNPEISIEKLL 218
            L+D+ + S+E+++
Sbjct: 189 YLLDSKDASLEEIM 202


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 262/498 (52%), Gaps = 45/498 (9%)

Query: 12  LVEENVKAVSLRFA-------LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           LV+E+++ +   +        L + +L+YA   I  R + D RDG K V RRII +M E 
Sbjct: 161 LVDESIRGIKGEYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE- 219

Query: 65  GLDFGA---AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ GA   ++KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG++
Sbjct: 220 -INKGAEKSSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSV 278

Query: 122 DGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + + AAA RYTEA+++    +++L  ++++ +++   ++  + EP V  SK P LL NG 
Sbjct: 279 EYN-AAAMRYTEAKVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGC 337

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + ++IP HN+ ++    ++ + +  I  ++L   I GPDF TGGII+     + 
Sbjct: 338 SGIAVSILSNIPCHNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQ 397

Query: 241 ESYRLGRGGFRVRARWCVEEV----------------------GRGSWCIVVTEIPYQVQ 278
             Y+ G+G   +R+   +E                         RGS  +V+  +P  V+
Sbjct: 398 NVYQTGKGNIEIRSNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVK 457

Query: 279 KSRLIEKIAELIIAKRIP---LLEDIRDES-AEDVRIVL-FPKNRSLDP-DLLMESIFML 332
            + LIE +  ++  K+     +L+ IRDES  ED+RIVL   KN  ++  +  +  IF  
Sbjct: 458 PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKY 517

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + M+  +  N   +          L   L+ W  +R   + +  + + Q + + + I+  
Sbjct: 518 TQMQITYHCNFVCIGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDL 577

Query: 393 LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            ++    I EII+ +   +N ++ K      F L + Q+  IL+++++ L  ++     +
Sbjct: 578 YILIQKKILEIISFLQKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCT 637

Query: 450 ELDNLLAEKEKIDSLLNS 467
             + +LA  E+   L+++
Sbjct: 638 HKEQILARMEQNRDLISN 655


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 137/178 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    
Sbjct: 126 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 183


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/281 (42%), Positives = 187/281 (66%), Gaps = 5/281 (1%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETG 119

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
           +G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES 
Sbjct: 120 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++
Sbjct: 179 REGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYI 236

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I I
Sbjct: 237 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 277


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 2   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 62  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 122 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 181

Query: 210 PEISIE 215
            + S+E
Sbjct: 182 KDTSLE 187


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/204 (51%), Positives = 150/204 (73%), Gaps = 1/204 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKR 294
           TE+ YQV K++LIEKIA+L+  K+
Sbjct: 180 TELXYQVNKAKLIEKIADLVXDKK 203


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 144/192 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 2   SIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 61

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 62  RYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 121

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 122 KDIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 181

Query: 205 ALIDNPEISIEK 216
            L+D+ + S+E+
Sbjct: 182 YLLDSKDASLEE 193


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 141/187 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEK 216
            + S+E+
Sbjct: 183 KDASLEE 189


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/171 (59%), Positives = 135/171 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 2   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 62  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 122 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 181

Query: 210 PEISIE 215
            + S+E
Sbjct: 182 KDASLE 187


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIE 215
            + S+E
Sbjct: 183 KDASLE 188


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 161/554 (29%), Positives = 286/554 (51%), Gaps = 49/554 (8%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           +PVV P++ P LL NG SGIAVGM T+IP HN+ EI      L++NP++S+ +L+  I G
Sbjct: 4   KPVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITG 63

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTGGII+  R  I+ +Y+ G+G   VRA+  ++    G   I+++EIPY V K+ L+
Sbjct: 64  PDFPTGGIIM-GRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELV 122

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +KIA+L   K +  +  I+DES +    +     R     +++ ++F  + +++ F +NM
Sbjct: 123 KKIADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNM 182

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             +  G  P V+ L  IL+ +LAH+  ++ RR+ + ++  + R  I++GL IA  +IDEI
Sbjct: 183 VAIVDGS-PHVLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEI 241

Query: 404 IAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I IIR   N D  K  +++RF L + Q  AIL++RL  L  LE  +++ E  +LL + + 
Sbjct: 242 IKIIRGSKNSDIAKDQLITRFGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDD 301

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEP 519
              +L   ++    I  E+ ++++ F        RRT   E+S ++  ++  + +IEK+ 
Sbjct: 302 YKDILAKPERVDQIIFNELLDIQKRFGDE-----RRT---EISDSEIISIDDEDLIEKQN 353

Query: 520 ITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + + +++ G+I+ + +    +          +  +  D +   ++ +T D +L  +  GK
Sbjct: 354 VLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGK 413

Query: 572 AYT---------------LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            Y+               LP  NL+     GE +Q ++ +  N         D+   L+ 
Sbjct: 414 VYSKKSYEIPEYGRAAKGLPIINLVQLE-KGEKVQAVVKIATN---------DTNKYLMF 463

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSI 675
           V+  G    +  SE     R G   L +   +++  V+   G    ++G      +IF+ 
Sbjct: 464 VTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNE 523

Query: 676 DQIPEMSR-GKGVR 688
           +++  M R   GVR
Sbjct: 524 NEVRTMGRVASGVR 537


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/171 (59%), Positives = 135/171 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 125

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 139/184 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 200 CEAA 203
            +  
Sbjct: 191 IDGC 194


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 98/185 (52%), Positives = 143/185 (77%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H
Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186

Query: 195 NVQEI 199
           ++ E+
Sbjct: 187 HLGEV 191


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 137/183 (74%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 211 EIS 213
           + S
Sbjct: 181 DAS 183


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 169/579 (29%), Positives = 293/579 (50%), Gaps = 31/579 (5%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   +  RAIPD RDG KP +RRI+ AM EM       F KS  + G V+   HPHG  
Sbjct: 19  YSTYVLLSRAIPDFRDGLKPSYRRILWAMQEMK---ATRFTKSFNVAGAVM-LYHPHG-- 72

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEARMTQVAELILQGVDEDA 151
           S Y ++V +AQ   Q  P++ G+GNFG    + A  A RYTE +++ +   ++  V +  
Sbjct: 73  STYPTMVGMAQKDSQLNPMVIGKGNFGQHASELAFGAERYTEVKLSAIGLDMMADVKKGG 132

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF D Y+     P VFP K+P +LA   SGI VG ++SIPS N  E+CEA +  I++ E
Sbjct: 133 VDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSSSIPSFNTTELCEAIIKRIEDNE 192

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
                  + ++ PDF TG  I+   + I      G G    RA+    E  + S  I+V 
Sbjct: 193 -------QTLLIPDFGTGAYIINDPDVIKSINENGSGSINQRAKV---EFDKDSREIIVK 242

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIF 330
           EIPY   K ++IE+I +L    ++  +  + D S  + + IV+  K R +D + L+E ++
Sbjct: 243 EIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKGLEIVITAK-RGVDLEQLLEKLY 301

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            ++ M+  +  N+ V++   +P+ M +  ++ +WL  R +   R  +  +Q    ++EIL
Sbjct: 302 QMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRTDTYQRMITKDIQTKQVQLEIL 361

Query: 391 KGLLIAYLNIDEIIAIIRN--EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
            GL     +++ +I IIRN  +D     + S F+L++ Q + +  L+L++L      +  
Sbjct: 362 YGLENIKDDLEHVIKIIRNSTDDNVIQNLSSEFNLSKLQAERVSGLKLKNLTTTFIKKQL 421

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADK 507
           S + +L  E E+++  +   ++    I  ++++V   F        R++   + S  A K
Sbjct: 422 SSIKSLEKEIEQLEWTVEKPQRIHKLIVQDMKDVIAQFGTP-----RKSQLIDKSIVAKK 476

Query: 508 ATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIALHAHTTDRILL 565
           A L     +E+  + V+++  G+++ +   S+  +A + FKEGD+    +     + +L+
Sbjct: 477 AKLSPVNTVEEYNVKVIVTKDGYVKKIPLTSLRGNAEIQFKEGDTPTSEIDTDNGEELLI 536

Query: 566 LSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            +     Y     +L   +    G  I  LIDL   ++I
Sbjct: 537 FTNKQNVYKKQLNDLSDTKPKDLGNYIPSLIDLEKGEEI 575


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 129/163 (79%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGDQ
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           SVY ++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L  +D++ V
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           DF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 139/188 (73%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPHNM 185

Query: 197 QEICEAAL 204
            E+  A L
Sbjct: 186 TEVVNAYL 193


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 137/183 (74%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SIE 215
           S E
Sbjct: 181 SXE 183


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAEL 289
           TE+P QV K++LIE IA+L
Sbjct: 180 TELPXQVNKAKLIEXIADL 198


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 139/185 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 211 EISIE 215
           + S+E
Sbjct: 184 DASLE 188


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 2   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 62  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 122 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 181

Query: 213 SI 214
           S+
Sbjct: 182 SL 183


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 137/184 (74%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SIEK 216
           S  +
Sbjct: 181 SARR 184


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/178 (56%), Positives = 135/178 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/181 (58%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 145/197 (73%), Gaps = 1/197 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKIA 287
           TE+P QV K++LIE IA
Sbjct: 180 TELPXQVXKAKLIEXIA 196


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 134/175 (76%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+V
Sbjct: 3   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++
Sbjct: 63  GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 123 AHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/169 (58%), Positives = 133/169 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 169


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 135/180 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 2   SIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 61

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 62  RYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 121

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L
Sbjct: 122 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 181


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 98/165 (59%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 104/182 (57%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 97/165 (58%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 145/200 (72%), Gaps = 1/200 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILV 179

Query: 271 TEIPYQVQKSRLIEKIAELI 290
            E+PYQV  +RL E  A+L+
Sbjct: 180 XELPYQVNXARLXEXXADLV 199


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/181 (57%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 142/196 (72%), Gaps = 1/196 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIV 179

Query: 271 TEIPYQVQKSRLIEKI 286
            E+ YQ  K+ LIEKI
Sbjct: 180 PELXYQXNKAXLIEKI 195


>gi|218516786|ref|ZP_03513626.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 167

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 132/165 (80%)

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           HGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E+E+IANTRKGK  + V+
Sbjct: 1   HGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELIANTRKGKQIMNVA 60

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
             E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRLQ YKDGGISDV CF +
Sbjct: 61  LPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRLQRYKDGGISDVRCFAM 120

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSGKF
Sbjct: 121 SDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKF 165


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 137/182 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY++LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SI 214
           S+
Sbjct: 181 SL 182


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 145/193 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP HN+ E  
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 201 EAALALIDNPEIS 213
           +A   ++++P+ +
Sbjct: 181 DAVKMVMEHPDCT 193


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 127/163 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           D+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 129/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD++V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/159 (59%), Positives = 128/159 (80%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 3   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 63  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 123 TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|332637207|ref|ZP_08416070.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella cibaria KACC 11862]
          Length = 758

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 159/576 (27%), Positives = 274/576 (47%), Gaps = 56/576 (9%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           ++++ +  Y ++   +R++P++ DG KPV RRI++AM+   L   A FKKS  +VG+V+G
Sbjct: 24  SMKQAFTNYGIAVASDRSVPNVLDGLKPVQRRILYAMTMAKLSPTAKFKKSQTVVGDVMG 83

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
             HPHGD   Y S+  L Q FV  +PL  I G G+F +I G+ AAA RYTE R+++  +L
Sbjct: 84  NWHPHGDN--YGSVDYLTQNFV--FPLAPIEGHGSFTDISGNPAAAARYTEVRLSRFGQL 139

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEICE 201
           ++  + E  V + D Y+     P VFP+K P LL NG  +GIAVG  +SI  HN  +   
Sbjct: 140 MVNDLSEKLVPYEDNYDNTKRMPRVFPAKLPYLLINGVKTGIAVGFTSSIAPHNPVDATR 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I  P+++++K +  + GPD PTGG +     S    Y+ G G F+      + + 
Sbjct: 200 LLKQYIKTPKMTLDKAISILQGPDLPTGGTLYGDVRSY---YKTGVGKFQNAG--TIIDS 254

Query: 262 GRGSWCIVVTEIPYQVQKS--RLIEKIAELIIAKRIPLLEDIRDESAED------VRIVL 313
                 +++TE+PY++  S    ++K+ +LI   ++  +  I D + ++      VRI +
Sbjct: 255 DEDKNTLIITEVPYRMGGSINSYLDKVKDLIADGKLKPIRSIDDFTTDEDIANNKVRIEV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             +N + D +     +F  +D+   + L    L  G  P+   L   L+     +  ++ 
Sbjct: 315 TLQN-NYDHEQAKTLLFQKTDLRQTYSLEWMALD-GLTPKRYTLMQYLQTVANFQHTLVV 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------KPKPVMVSRF 421
           R     ++    R+EI+ GL+     I  I+   +N D            K  P  ++ F
Sbjct: 373 REYKADLEKASARLEIVDGLIQVPDLIQAIVHAAQNTDGKADLMQVLQGLKTIPAQMASF 432

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           S TE Q DAI ++R+  L +++          L+AEK  ++  +   K+   +    ++ 
Sbjct: 433 SFTERQADAIASMRVYQLNRVDA-------QALVAEKADLEERIAMAKRYIEEPDLRVQL 485

Query: 482 VKEIFS------KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E         K    G RRTT  + S       +  +I   P+T+ I   G+I+    
Sbjct: 486 LSERLDEQIKALKKDGFGSRRTTLGDESELKAKVAKTVII--NPVTITIDRYGYIKMTDK 543

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             V+         D ++  L     D + + + DG+
Sbjct: 544 REVETD-------DEIQFVLQTTDDDWLEMFTADGR 572


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+RD Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 129/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVV
Sbjct: 121 DITISELMEFIPGPDFPTAGKIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 130/165 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF   Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/167 (58%), Positives = 128/167 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 133/177 (75%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KS
Sbjct: 2   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+
Sbjct: 62  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP
Sbjct: 122 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELME 174


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 131/173 (75%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + S+E
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLE 176


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 129/166 (77%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD+
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/266 (42%), Positives = 177/266 (66%), Gaps = 5/266 (1%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT
Sbjct: 2   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G 
Sbjct: 62  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGR 120

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
             VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E 
Sbjct: 121 IVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  +
Sbjct: 180 MRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQ 237

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLL 394
           ++V+ RR+ F +     R  IL+GL+
Sbjct: 238 KDVITRRTQFELNKAKERAHILEGLI 263


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+++ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/208 (47%), Positives = 148/208 (71%), Gaps = 1/208 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 12  LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 71

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 72  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 131

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 132 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 191

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLL 218
           IP HN++E+ +AA+ LI+ P+ ++++LL
Sbjct: 192 IPPHNLREVAKAAITLIEQPKTTLDQLL 219


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 135/173 (78%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ 
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           P V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++ L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 131/171 (76%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGM
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VI K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLME 174


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELME 174


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 137/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 98/154 (63%), Positives = 124/154 (80%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIA GMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G G FG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIME 174


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 96/180 (53%), Positives = 131/180 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/186 (50%), Positives = 136/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPV RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+ PNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELME 174


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 98/149 (65%), Positives = 122/149 (81%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR
Sbjct: 2   RALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++
Sbjct: 62  MAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDD 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
             SEP V P++ PNLL NG+SGIAVGMAT
Sbjct: 122 SMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELME 174


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 176/265 (66%), Gaps = 5/265 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 4   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 63

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 64  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 122

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +R+
Sbjct: 123 RAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 181

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  +++V
Sbjct: 182 VIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDV 239

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIA 396
           + RR+ F +     R  IL+GL+IA
Sbjct: 240 ITRRTQFELNKAKERAHILEGLIIA 264


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VI K HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLME 174


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 244/443 (55%), Gaps = 40/443 (9%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           M  +IP HN+ E+ +A   +IDNP ++ E L++ I GPDFPTGG+I+  RE I ++Y  G
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGGLIM-GREGIRQAYLTG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +E++  G   I+V EIPYQV K++L+E+IAEL+  KR+  + D+RDES 
Sbjct: 60  RGSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESD 119

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R ++P +++  ++  + M+  F +NM  L +  VP+V+ L  I+  +L 
Sbjct: 120 RKGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLAL-VDNVPKVLNLRDIIYYYLE 178

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H+++V+ RR+ + ++  + R  IL+GL IA  NID II IIR    ED  +  M+  F  
Sbjct: 179 HQKDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMMGEFGF 238

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS----GKQQWN--QIAC 477
           +E Q  AIL++RL+ L       +++     L  K+ I SLLNS      + WN  ++  
Sbjct: 239 SEKQAQAILDMRLKRL-------VRNWTGKRL--KKSIQSLLNSFAYFRARNWNSEKLVL 289

Query: 478 EI--REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           +I  +E+ EI +K  D   RRT   E++        + +I +E   V I++ G+I+ L  
Sbjct: 290 DIIKKEIGEIKAKFADA--RRT---EITAGAGDFDIEDLIAEEDAVVTITHNGYIKRLHV 344

Query: 536 HSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNL--LSGR 584
           ++          ++A+  KE D +++ L   TT   LL  TD GK Y L    +   S  
Sbjct: 345 NTYKAQRRGGKGVTAMGTKEDDFVEL-LFITTTHHYLLFFTDKGKVYRLKTHEIPEASRT 403

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV 607
             G AI  L+++  + D V A +
Sbjct: 404 AKGTAIVNLLNITGD-DKVNAVI 425


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 124/161 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLME 174


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIME 174


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 138/186 (74%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           VV P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+ +   ++E
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIME 174


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 124/161 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 180/308 (58%), Gaps = 30/308 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM--GLDFGAAFKKSARIVGEVI 83
           L + +L+YA   I  R + D RDG K V RRII +M E+  G D   ++KK ARIVGEVI
Sbjct: 64  LSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGSD-KKSYKKCARIVGEVI 122

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-EL 142
           GK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++ + AAA RYTEAR++    ++
Sbjct: 123 GKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYN-AAAMRYTEARISDFCYDV 181

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  ++++ VD+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN+ ++  A
Sbjct: 182 LLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNLVDVINA 241

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV- 261
           +++ + N +I+ ++L   I GPDF TGGII+  ++++   Y  G+G   +R+    E V 
Sbjct: 242 SISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTGKGSIIIRSNVFYEYVH 301

Query: 262 ---------------------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---L 297
                                 +    +++  +P  V+ + LIE I  ++  K+     +
Sbjct: 302 NNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIENIVTVLNEKKNEHDNI 361

Query: 298 LEDIRDES 305
           L  IRDES
Sbjct: 362 LSKIRDES 369


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 123/161 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/137 (67%), Positives = 114/137 (83%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           K VHRRI++AM +M L+  AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYP
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFGNIDGDSAAA RYTE ++T  A L+L G+D+DAVDFR TY+++D EPVV P+
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 171 KFPNLLANGTSGIAVGM 187
            FPNLLANG+SGIAVGM
Sbjct: 124 GFPNLLANGSSGIAVGM 140


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 157/222 (70%), Gaps = 4/222 (1%)

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL N
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSG 119

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  +
Sbjct: 120 IRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGI 178

Query: 299 EDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            D+RDES  E +R+V+  K R  +P++ +  ++  + M+  F
Sbjct: 179 SDLRDESDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTF 219


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 139/188 (73%), Gaps = 1/188 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ L++ P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKTT 180

Query: 214 IEKLLEYI 221
           +++LL+ +
Sbjct: 181 LDELLDIV 188


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 123/161 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EP+V PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 122/161 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 130/180 (72%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT+IP
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 123/161 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/253 (42%), Positives = 170/253 (67%), Gaps = 5/253 (1%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G 
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGR 119

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
             VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E 
Sbjct: 120 IVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 178

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++  +
Sbjct: 179 MRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQ 236

Query: 369 REVLFRRSSFRMQ 381
           ++V+ RR+ F + 
Sbjct: 237 KDVITRRTQFELN 249


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 158/533 (29%), Positives = 272/533 (51%), Gaps = 44/533 (8%)

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG +GIAVG++TSIP HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI+  S 
Sbjct: 1   CNGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSH 60

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + +V+ Y  GRG   ++ +  +E++      IV+ EIPYQV K  LI++IAEL+   +  
Sbjct: 61  KDMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEK 120

Query: 297 LLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + D+RDES  D +RI++  K R  +P+ +++ ++  + ++   P+N+ VL +G+ P+ +
Sbjct: 121 GISDLRDESDRDGIRIIVELK-REANPEKVLKKLYQRTQLQKSIPINLTVL-VGKQPKTL 178

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            L  +L E++ HR EV+ +R+ + +Q  ++R+ I++GLL A  N D +I I+R   +  +
Sbjct: 179 SLKEVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAE 238

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  + S F L++ Q  AIL++RL     LE  ++ +E D L  + E+   +L+S   + 
Sbjct: 239 AKFKLTSEFQLSDTQAQAILDMRLSRFTSLESEKLYNEADELRKQIERYREILSS---EQ 295

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530
            +I   I E+ E+  K  D   R+T   E    D+  L     E+  I  V+SN   I  
Sbjct: 296 EKIKVFINEIDELLEKYGD--DRKTIVLE---KDEGKL---TFEENYIIAVLSNGKIINY 347

Query: 531 ------------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
                       R       ++++L    GD L       ++  I  ++ DG+     A 
Sbjct: 348 KIDNPEDREEKERIFNKVINEITSLILP-GDYLVSIQEIKSSQPIAFITNDGRCIWSLAA 406

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L  G G       L  ++ N+ + TAF  +     L + +K         E I    + 
Sbjct: 407 DLPKGEGK------LKYIDENKIVGTAFKSEGEEDRLFLLTKNGIIKRMTFEDIFYKSQN 460

Query: 639 KTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEM-SRGKGV 687
           +  + +  ++  ++V+    DH   +A+      LLIF  +QI    ++ KGV
Sbjct: 461 QQIIPLQEDD--EIVMAFADDHPSYIAIYTAKADLLIFERNQIRVTGAKAKGV 511


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/159 (57%), Positives = 123/159 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D+
Sbjct: 62  GDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           + VD+   Y+  +  P V P+K P LL NG+SGIAVGMA
Sbjct: 122 ETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 140/199 (70%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+KSA+ V
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLL 218
            +A L  IDNP+I++ +L+
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 136/186 (73%), Gaps = 1/186 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPH D + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFPT 228
           GPD+PT
Sbjct: 181 GPDYPT 186


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 123/175 (70%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMA
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 119/148 (80%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           +  P V P+K PNLL NG+SGIAVGMAT
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMAT 148


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/493 (31%), Positives = 261/493 (52%), Gaps = 36/493 (7%)

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRS 59

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V+
Sbjct: 60  RTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 119

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ 
Sbjct: 120 EVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVV 177

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F  +  + R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  A
Sbjct: 178 RRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQA 237

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS   
Sbjct: 238 ILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD-- 295

Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541
              +RRT   E+      +L+ + +IE+  + + +SNRG+I+ L        K     + 
Sbjct: 296 ---KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQ 349

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599
               K+ D ++  +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ +
Sbjct: 350 GTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDED 409

Query: 600 QDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKL 652
           + I T    +S       L   +  G   IV+ + +   AN R+ G   L +  E+++  
Sbjct: 410 ESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELIN 466

Query: 653 VVKVTGDHVAVVG 665
           V+   GD   ++G
Sbjct: 467 VLLAEGDMDIIIG 479


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 167/632 (26%), Positives = 310/632 (49%), Gaps = 49/632 (7%)

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           PL+   GN G+ID D  AA RYTE R+ +++E +L+ + ++ V F   +++ + EP + P
Sbjct: 4   PLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPTILP 63

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           + FPNLL NG  GIA G AT IP HN+ E+ +A + +I NP I+IE++   I+GPDFPTG
Sbjct: 64  AIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTG 123

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           G IV  +  I ++++ G+G  ++ + + + E   G   I +T IP+ + KS LIE+I ++
Sbjct: 124 G-IVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDI 181

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
               +I  ++++ D+S ++   +L    +  +PDL++  +   + ++  +  N +V    
Sbjct: 182 RFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYN-SVAICD 240

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P+++ +  ++  +L H R++     +F +    +R+EI+ G L      DE+I +IR 
Sbjct: 241 NSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRA 300

Query: 410 EDKPKPVMVSR----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            D  K  +VS     F+ ++ Q +AI ++RL  L K+E+     E  NL     +   L+
Sbjct: 301 SDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLI 360

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDL----GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
              K +++         K + +  TD     G+ R T    S       +  +++ E   
Sbjct: 361 -ENKDEFD---------KNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFY 410

Query: 522 VVISNRGWIRSL---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
             I+  G  + L    S   ++       GD        +   + + L+  G+   L   
Sbjct: 411 FWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVH 470

Query: 579 NL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK---------GNAFI 625
            +  L+ +     +++ + + +NQ I++ F  DS  + + L+  SK              
Sbjct: 471 QIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRMNLDQLMK 530

Query: 626 VEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           +++ ++  I   ++G   + V  EEK+K +V +T        +NR L + SI +IP  +R
Sbjct: 531 IKQKKLQNIFRFKEGDELISVFLEEKLKNIVLIT-------TQNRALKM-SISEIPIYTR 582

Query: 684 GK-GVRLQSY-KDGGISDVICFKICEGLTWID 713
              G+++  + K+  IS     +  E L  ID
Sbjct: 583 NSTGIKIFRHRKNEFISASQTIESSESLAVID 614


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 113/148 (76%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQP+ 
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDFRD Y+   SEPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+KFPNLL NG  GIAVGMAT+IP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/162 (54%), Positives = 120/162 (74%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y +  I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGD 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RYPL+ GQGNFG++DGD+AAA RYTE RM ++A  +L  ++++ V
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           DF   Y+  + EP++ P+K PNLL NG   IAVG+   I  H
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVGVGPPISRH 162


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 124/166 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+GE +GK
Sbjct: 9   IKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIGETMGK 68

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++AE +++
Sbjct: 69  YHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMAEEMVR 128

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            ++++ V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++
Sbjct: 129 DIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNM 174


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 166/253 (65%), Gaps = 5/253 (1%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+
Sbjct: 61  PELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKII 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMES 328
           VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +R+V+  K R  +P++ +  
Sbjct: 119 VTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELK-RDANPNVTLNL 177

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + M+  F + M  L +   PQ++ L  +L  ++  +++V+ RR+ F +     R  
Sbjct: 178 LYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAH 236

Query: 389 ILKGLLIAYLNID 401
           IL+GL+IA  NID
Sbjct: 237 ILEGLIIALDNID 249


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 122/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG
Sbjct: 1   SIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           + HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L
Sbjct: 61  RYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVG
Sbjct: 121 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 2/199 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D  +  + + +  +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+ 
Sbjct: 362 MGEDVEARRSFIQQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYT 421

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     AF K  R++G+V+G+ HPHGD +VYDSLVRL QP+  RYPL  GQGNFG+
Sbjct: 422 MYDGGYRPDKAFSKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGS 481

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA+RYTE +M+ +A  +++ +DED VDF+D Y+    EP V  ++FPNLL NG+
Sbjct: 482 PGNDGAAAHRYTETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGS 541

Query: 181 SGIAVGM--ATSIPSHNVQ 197
            GIAVGM   T I ++  Q
Sbjct: 542 VGIAVGMIKRTRIDNYRTQ 560


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 126/170 (74%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KS
Sbjct: 1   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+
Sbjct: 61  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAV
Sbjct: 121 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/153 (59%), Positives = 117/153 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
               LA IDN +ISIE L+E+I GPDFPT  II
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAAII 153


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++ M E+GL  G   KKSARIVGEV+GK HPHGD +VYDSLVR+ Q F+
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RYPLI GQGNFG++DGDS AA RYTE RM  +A  +L+ +D++ VDF   +++   EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+  PNLL NG SGIAVGMAT+IP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 120/157 (76%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y  YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPH
Sbjct: 2   YADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D+
Sbjct: 62  GDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + VD+   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 122 ETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VY ++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPH D +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 148/217 (68%), Gaps = 1/217 (0%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT
Sbjct: 2   RYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG 
Sbjct: 62  NIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGS 120

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + 
Sbjct: 121 IPIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
             ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 257/458 (56%), Gaps = 24/458 (5%)

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            TEARM++ A L++  + E+ VD    Y+   ++P V P+ FPNLL NGTSGIAVGMAT++
Sbjct: 564  TEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATNM 623

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              HN+ E+  AA  LI +P  +++KL+E++ GPD PTGG+++   E +  +Y  GRG  R
Sbjct: 624  IPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTGGLLLGLDE-VRRAYETGRGVVR 682

Query: 252  VRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRD--ESA 306
            +R +  +   E  RG   I V E+PY V   ++I  I  E+   KR+  + D++D  +  
Sbjct: 683  MRGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDRE 742

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
               R+V+  K   ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LA
Sbjct: 743  NGTRLVIECKV-GVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLA 800

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NED--KPKPVMVSRFSL 423
            HR EV+ RRS++R +    R+ ++ GLLIA L+ID+++ +IR +ED    K  ++ +F L
Sbjct: 801  HRYEVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQKFKL 860

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            +E Q   IL+  LR L K +  ++++E + L AE  ++ ++L+        ++ E+  V 
Sbjct: 861  SEIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIAELSTILDDENVLKKLVSDELAAVV 920

Query: 484  EIFSKSTDLGRRRTTFCEVS----RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            + F+       RRTT  +       A  A      +  +P  V++S  G +    + S +
Sbjct: 921  KQFAAP-----RRTTLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEE 975

Query: 540  LSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAY 573
             +    + G    D+++  +H+    R+LL+++ G+A+
Sbjct: 976  AAEGRRRHGRVKHDAVRAVVHSTARGRVLLVTSAGRAF 1013



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 10/139 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA S I  RA+PD RDG KPVHRRI++AM E G     A  KSAR+VG+V+G+
Sbjct: 30  VSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKSARVVGDVMGR 89

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAY--------RYTEARM 136
            HPHGD ++YD++VR+AQ F    PLI G GNFG+  DG +AA Y        R  +   
Sbjct: 90  YHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPDDGPAAARYCVTGDTRIRLADGSS 149

Query: 137 TQVAELILQGVDEDA-VDF 154
            ++ EL+    D +A VDF
Sbjct: 150 PRIGELVDLAPDSEADVDF 168


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 119/158 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SGI
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/154 (58%), Positives = 119/154 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 2   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 62  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           D+   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 122 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 155


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 119/157 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 148/217 (68%), Gaps = 1/217 (0%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT
Sbjct: 2   RYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG 
Sbjct: 62  NIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGF 120

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  + 
Sbjct: 121 ITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
             ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/232 (43%), Positives = 153/232 (65%), Gaps = 3/232 (1%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-AFKKSARIVGEVIG 84
           L + +L+YA   I  R + D RDG K V RRII +M E+   +   ++KK ARIVGEVIG
Sbjct: 13  LSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCARIVGEVIG 72

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELI 143
           K HPHGD+SVYD+L+RLAQ       LI+G GNFG+++ + AAA RYTEAR++    +++
Sbjct: 73  KYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEARISDFCYDVL 131

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  ++++ +D+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN+ ++  A+
Sbjct: 132 LDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNIVDVINAS 191

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +  + N +I+ ++L   I  PDF TGGII+ +++++ + Y  G+G   +R+ 
Sbjct: 192 INFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRSN 243


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 143/208 (68%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYI 221
           HN+ EI EA +  +DNP  + + +++ +
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIV 212


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 118/157 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/150 (58%), Positives = 119/150 (79%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEV 150


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 151/482 (31%), Positives = 256/482 (53%), Gaps = 36/482 (7%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+R  +E    G 
Sbjct: 5   VMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRSRTEIETTKTGR 63

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324
             IVVTE PY V K+++ E I  L+  KRI  +  +RDES  E VR V+  K R    ++
Sbjct: 64  ERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVK-RDASANV 122

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ RR+ F  +  +
Sbjct: 123 ILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAE 181

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GLLIA  +IDE+I IIR    + + +  ++S+F L+E Q  AIL++RLR L  
Sbjct: 182 ARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTG 241

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS      +RRT   E
Sbjct: 242 LERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD-----KRRT---E 293

Query: 502 VSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLK 552
           +      +L+ + +IE+  + + +SNRG+I+ L        K     +     K+ D ++
Sbjct: 294 LMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVR 353

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +   T D +L  +  G+ Y L    +   GR   G  +  L+ L+ ++ I T    +S
Sbjct: 354 ELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVES 413

Query: 611 ----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAV 663
                  L   +  G   IV+ + +   AN R+ G   L +  E+++  V+   GD   +
Sbjct: 414 DRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDII 470

Query: 664 VG 665
           +G
Sbjct: 471 IG 472


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++YD+LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 151/221 (68%), Gaps = 1/221 (0%)

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS++A RYTEARM++++  IL+ + +D +D++D Y   + EP V PS+FPNLL NG +G
Sbjct: 2   GDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAAG 61

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++
Sbjct: 62  IAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKA 120

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+R
Sbjct: 121 YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLR 180

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           DES      ++    R  + ++++ +++  + ++T F +++
Sbjct: 181 DESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIHL 221


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 131/190 (68%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I  +   GRG    RA+  +E    G   I V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXV 179

Query: 271 TEIPYQVQKS 280
           TE P  V K+
Sbjct: 180 TEFPXXVXKA 189


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 119/157 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  197 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM  +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P++ PNLL NG+SGIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSH 194
            P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 212/407 (52%), Gaps = 21/407 (5%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  
Sbjct: 2   LKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAE 61

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    + 
Sbjct: 62  LIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVR 121

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKS 535
            E+    E +        RR+    V+RA+ KA  +  ++  EP+TVV+S +GW+R  K 
Sbjct: 122 AELIADAETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKG 174

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   + 
Sbjct: 175 HDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQ 234

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                      + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   
Sbjct: 235 PPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRP 294

Query: 656 VTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKI 705
           V     + +A V    +LL+F I  +P++ +GKG ++        + ++  ++D+    I
Sbjct: 295 VPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--I 352

Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +G T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 353 GQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 399


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 159/232 (68%), Gaps = 5/232 (2%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           S  E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++
Sbjct: 179 SDREGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQIL 228


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 165/246 (67%), Gaps = 5/246 (2%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETG 119

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES 
Sbjct: 120 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 178

Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E +R+V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++
Sbjct: 179 REGMRMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYI 236

Query: 366 AHRREV 371
             +++V
Sbjct: 237 NFQKDV 242


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VRL
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +V +S VR+AQ F     L+ G GNFG +DGDSAAA RY EARM ++A  IL+ + +D
Sbjct: 1   DFAVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 118/150 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  ++ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  + +P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 110/148 (74%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++Y +LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 117/152 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           D+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/149 (57%), Positives = 118/149 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICE 201
           PNLL NG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVIQ 149


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 190/349 (54%), Gaps = 39/349 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   IKERAIPDL DGFKPV RRIIH + EM       F K A +VG  + + HPH
Sbjct: 12  FLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEMD---DGKFHKVANVVGWAM-RYHPH 67

Query: 90  GDQSVYDSLVRLAQP--FVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQG 146
           GD S+Y++LV LA    F++R      QGNFGN + GDSAAA RY E R+   A+ +L  
Sbjct: 68  GDSSIYEALVNLANCDLFIER------QGNFGNSLTGDSAAAARYIECRLLPFAKKVL-- 119

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            + +  +F D+Y+  + EPVVFP+K P +L  G SGIAVGM+T I  HN  E+ +A  A 
Sbjct: 120 YNPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLDAMAAS 179

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +            Y + PDF  GGI+       VE YR GRG   VRA+    +  R   
Sbjct: 180 LKGE--------SYQLYPDFLGGGIV------DVEDYRDGRGSVSVRAKLNTTDPKR--- 222

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            I++ E+PY      +I  + E   AK+  L +  I D +AE V I +    R+     +
Sbjct: 223 -IIIEELPYGTTSEAMIRSVEE--AAKKGKLKISSINDYTAEKVNIEI-NLARNTYAQEI 278

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           +++++  +D ET+  +N  V+    VP +M +  IL +W A    V+ +
Sbjct: 279 VDALYAYTDCETKLSINPLVIR-DNVPTIMGVHEIL-DWHAQHLVVVLK 325


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/153 (56%), Positives = 117/153 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           + I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   AVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             Y+  +  P V P+K PNLL NG+SGIAVG A
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/144 (59%), Positives = 115/144 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMAT 189
            V P+K PNLL NG+SGIAVGMAT
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMAT 144


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 200/367 (54%), Gaps = 17/367 (4%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           ++GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAIL+ +LR L KLEE +I+ 
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E D L  E++K++ LL S ++  N +  EI+   + F        RR+   E   A KA 
Sbjct: 61  EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-----RRSPLVEREEA-KAL 114

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+        +  + + L +D
Sbjct: 115 TERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSD 174

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G++Y+L +  L S RG GE I   +++     I    + +     LV S  G  F+ +  
Sbjct: 175 GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGD 234

Query: 630 EIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           ++++  R GK  + +    ++   +++  +  D +  +    ++L+F I  +P++S+GKG
Sbjct: 235 DLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKG 294

Query: 687 VRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            ++          ++  +S+++       +T   +  R      +DL  + G+RG  G+L
Sbjct: 295 NKIINIPAAKAKTREEVLSNLMVLPQGASITLY-AGKRKLGLKVSDLDNFRGERGRRGAL 353

Query: 740 VPKGFPR 746
           +P+G  R
Sbjct: 354 LPRGLQR 360


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 84/142 (59%), Positives = 112/142 (78%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+I
Sbjct: 62  TEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNI 121

Query: 192 PSHNVQEICEAALALIDNPEIS 213
           P HN+ E+ +  L L  NP+I+
Sbjct: 122 PPHNLTEVIDGVLRLSQNPDIT 143


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 116/146 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSI 191
            V P+K PNLL NG+SGIAVGMAT+ 
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNF 153


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 117/147 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEI 199
           PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEV 147


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 141/470 (30%), Positives = 239/470 (50%), Gaps = 23/470 (4%)

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AELIL  + ++ V+F   +++ + EP V PS FPNLL NGT+GIA+GMAT +P HN +EI
Sbjct: 1   AELILGELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEI 60

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR---GGFRVRARW 256
            +A +A + NP +S  +L   + GPDFPTGGII  ++  I ES+  GR      ++ +++
Sbjct: 61  IDATIAKLQNPNLSFSQLCSIVKGPDFPTGGIIYGTK-GIEESFETGRTLKNKIQLFSKF 119

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +    +  + I +TEIPY V KS L+  I  LI    +  + +I+D+S  E ++IV+  
Sbjct: 120 VITSDNKNKY-IEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVI-T 177

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   +M  +F  + ++  +  N N++     PQ++ L+ ++  ++ H  ++  + 
Sbjct: 178 LEKDANEKSIMRYLFSKTKLQINYSYN-NMVIKNNSPQLLNLNNLITSYVEHISDIKTKT 236

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDAI 431
            ++ ++    R+EI+ G L      DEII +IR  +  K  ++      F  T+NQ  AI
Sbjct: 237 LTYDVEKHKLRLEIVLGFLKVTEITDEIIEVIRKSEGSKAGVIQDLMNIFGFTKNQATAI 296

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             LRL  L K +  + K+E D L +E   I+SLL    +    +   ++E++  F     
Sbjct: 297 AELRLYKLSKTDYNEFKNEKDYLESEINYINSLLEDKDKFTFYLINLLKELRNEFPSP-- 354

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEG 548
              RRT   +    +    ++ +I++E I V IS  G+I+ L      S D S    K+ 
Sbjct: 355 ---RRTQIVD-REYNFDYDEKDLIKEEIINVAISKFGYIKRLSQKVIESNDFSTYVLKDE 410

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDL 596
           D L      +T D  L+ +  G    +P   +   +     I L   +DL
Sbjct: 411 DYLTFYNQVNTMDTFLIFTNFGNYAIIPIYKIEECKWKDNGIHLSDFVDL 460


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 216/403 (53%), Gaps = 29/403 (7%)

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+   A   ++NPE S E+LL+ +I    GPDFPTG ++V  R+ I E+Y
Sbjct: 12  ATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAY 70

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RD
Sbjct: 71  RTGRGSITMRAVIEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRD 129

Query: 304 ESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           E++     R+V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  +
Sbjct: 130 ETSSRTGQRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFI 187

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
           + W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++
Sbjct: 188 RHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHGLM 247

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E
Sbjct: 248 DLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVSEE 307

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530
           +  + E +      G  R T       D +   + +I +E I V ++  G+I        
Sbjct: 308 LAAIVEKY------GDDRQTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDY 359

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           R+ K     +     KE D +     + T   +L  +  G+ Y
Sbjct: 360 RAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVY 402


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 129/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 116/146 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSI 191
            V P+K PNLL NG+SGIAVGMAT+ 
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNF 153


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/151 (57%), Positives = 115/151 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISI 214
           AVGMAT+IP HN+ E+ +  LA IDN  I+I
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDNEAITI 151


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/142 (58%), Positives = 113/142 (79%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+I
Sbjct: 62  TEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNI 121

Query: 192 PSHNVQEICEAALALIDNPEIS 213
           P HN+ E+ +  L+L  NP+IS
Sbjct: 122 PPHNLTEVIDGVLSLSKNPDIS 143


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/151 (56%), Positives = 116/151 (76%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 116/150 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 113/142 (79%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+I
Sbjct: 62  TEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNI 121

Query: 192 PSHNVQEICEAALALIDNPEIS 213
           P HN+ E+ +  L+L  NP+I+
Sbjct: 122 PPHNLTEVIDGVLSLSKNPDIT 143


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 129/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/142 (59%), Positives = 112/142 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P+K PNLL NG+SGIAVGMAT+
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY++LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 115/155 (74%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD+S Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 134/190 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAAL 204
           N+ EI +  +
Sbjct: 188 NLAEIIDGTV 197


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 114/147 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 114/155 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 84/143 (58%), Positives = 113/143 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHN 195
           PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 114/155 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V 
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 101 LAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   ++
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
               EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+AL
Sbjct: 121 GTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRRI++AM+++G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 173 PNLLANGTSGIAVGMATSIPSH 194
           PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 85/155 (54%), Positives = 114/155 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD RDG KPVHRRI+++M ++ +    A+ K AR+VG+V+G+ HPHGD SVY +
Sbjct: 2   IVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYMA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           LVR+AQ F     L+ GQGNFG++DGD  A+ RYTEA+M   A  +L  +D+D VDF+  
Sbjct: 62  LVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP
Sbjct: 122 YDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLA 147


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 113/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y +
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V+GK 
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+++L 
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFADVLLG 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 125 ELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 113/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y +
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYGA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLA 147


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/164 (53%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVD 148
           GD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L  + 
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELG 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP
Sbjct: 121 QGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 164


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 113/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y +
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYAA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 114/147 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +S P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V+GK 
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+++L 
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKSFAAMRYTEAKLSKFADVLLG 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 125 ELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/171 (50%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V+GK 
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTEA++++ A+++L 
Sbjct: 65  HPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFADVLLG 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV
Sbjct: 125 ELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNV 175


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 114/155 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHG+ S Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 113/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 113/147 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 128/181 (70%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180

Query: 252 V 252
           V
Sbjct: 181 V 181


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 113/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 157/234 (67%), Gaps = 5/234 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +RI
Sbjct: 120 RAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++
Sbjct: 179 VIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYI 230


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +KKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 157/234 (67%), Gaps = 5/234 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +RI
Sbjct: 120 RAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++
Sbjct: 179 VIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYI 230


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 112/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y +
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 127/177 (71%), Gaps = 1/177 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 122 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 122/171 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG V+G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 DIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 241/468 (51%), Gaps = 64/468 (13%)

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +A IDN EI+I++L+++I GPDFPT  +I   R+ I E+YR GRG   VRAR  VE   +
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYVRARATVETNEK 59

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDP 322
           G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI +  K R    
Sbjct: 60  GREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIK-RDAVG 118

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ RRS F ++ 
Sbjct: 119 EVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREVVTRRSIFELRK 177

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------------- 419
              R  IL+GL +A  NIDE+IAIIRN    +    S                       
Sbjct: 178 ARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPD 237

Query: 420 -----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                      ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S 
Sbjct: 238 ELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSA 297

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++    I  E+ EVK  F      G  R T  E++ A      + +I +E + V +S+ G
Sbjct: 298 ERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQEDVVVTLSHEG 349

Query: 529 WIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++        + +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L
Sbjct: 350 YVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQL 409

Query: 581 -LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
             + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 410 PQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 454


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 88/155 (56%), Positives = 113/155 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPH D S Y++
Sbjct: 2   VKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYEA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF   
Sbjct: 62  MVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMPN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 122 YDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 84/147 (57%), Positives = 112/147 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLA 147


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 200/364 (54%), Gaps = 34/364 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++G  + K 
Sbjct: 24  ENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSLKEMD---DGRFNKAANVIGNTM-KY 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q    +  +I  QGN+G+ + GDSAAA RY EAR+++ A  I  
Sbjct: 80  HPHGDASIGDAMVQIGQ----KNLMIDCQGNWGDPVTGDSAAAPRYIEARLSKFA--IDV 133

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             + D   ++ +Y+  + EP+  P KFP LLA G  GIAVG+AT I  HN  E+ +A++A
Sbjct: 134 AFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGAEGIAVGLATKILPHNFVELLDASIA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +++         +   + PDFPTGG+   S      +Y  G+ G +VR R  + E  R  
Sbjct: 194 VLNG--------IRPNLLPDFPTGGLADAS------NYNEGQRGGKVRVRARIAE--RDK 237

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPD 323
             +V+TE+P+      L+E +       +I  ++ I D ++++V I+  L P    + PD
Sbjct: 238 KTLVITEVPFSTTTGGLMESVVAANDKGKIK-IKSIVDHTSKNVEILINLAP---GISPD 293

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           + +++++  +D E     N  V+   + P+ M ++ +L E   H +E+L +    R+  +
Sbjct: 294 VTIDALYAFTDCEVSISPNTCVIHDDK-PRFMSVNDMLTESTYHTKELLKQELEIRLNEL 352

Query: 384 DRRV 387
             ++
Sbjct: 353 KEKI 356


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 109/142 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMAT 189
            P+K P LL NG+SGIAVGMAT
Sbjct: 121 LPTKVPALLVNGSSGIAVGMAT 142


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/179 (47%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 126/177 (71%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 157/234 (67%), Gaps = 5/234 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +R+
Sbjct: 120 RAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           V+  K R  +P++ +  ++  + M+  F + M  L +   PQV+ L  +L  ++
Sbjct: 179 VIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVLNLKQVLVHYI 230


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 113/147 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G+SGIAVGMAT+IP HN+ E+    LA
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 109/139 (78%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V P
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 170 SKFPNLLANGTSGIAVGMA 188
           +K PNLL NG+SGIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 122/171 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG V+G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 DIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/143 (57%), Positives = 111/143 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIA 184
           +  P V P+K PNLL NG+SGIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 112/142 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQE 198
            NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 108/141 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMA 188
            P+K P LL NG+SGIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/141 (58%), Positives = 111/141 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMAT 189
           P+K PNLL NG+SGIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 157/234 (67%), Gaps = 5/234 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  E +R+
Sbjct: 120 RAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           V+  K R  +P++ +  ++  + M+  F + M  L +   PQ++ L  +L  ++
Sbjct: 179 VIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYI 230


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 118/158 (74%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNL
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           L NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + S
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDAS 158


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 204/375 (54%), Gaps = 40/375 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HAM  M       F K A ++G  + + 
Sbjct: 30  ENWFLEYASYVILERAVPHINDGLKPVQRRILHAMRVMD---DGRFNKIANVIGSTM-QY 85

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V + Q  +    LI  QGN+G+I  GDSAAA RY E R+++ A  ++ 
Sbjct: 86  HPHGDASIGDAIVNMGQKDL----LIEPQGNWGDIRTGDSAAAPRYIEGRLSKFALDVV- 140

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +ED  +++ +Y+    EPV  P KFP LLA G  GIAVG++T +  HN  E+ EA++A
Sbjct: 141 -FNEDTTEWQASYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLSTKVLPHNFVELIEASIA 199

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++ N +          I PDF TGG I       V +Y  G+ G RVR R  +E++ + +
Sbjct: 200 VLKNKKFE--------IFPDFATGGFID------VSNYNEGQKGSRVRVRARIEDMDKKT 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI--VLFPKNRSLDPD 323
             +V+ +IP+    + LIE I +     +I  ++ + D +A+DV I   L P     DP 
Sbjct: 246 --LVIKDIPFGTTTTSLIESIVKANDTGKIK-IKKVIDNTAKDVEIQVQLLP---GTDPG 299

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           + +++++  ++ E+    N  V+   + P  + +  IL+  +  R+ V   +   ++   
Sbjct: 300 ITIDALYAFTECESSISPNACVIVDDK-PHFLSVHEILR--ICTRQTVDLLKQELQI--- 353

Query: 384 DRRVEILKGLLIAYL 398
            RR E+L+ +L + L
Sbjct: 354 -RRSELLERILFSSL 367


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 110/142 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AMSE+G D    +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P++ PNLL NG+SGIAVGMAT+
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 121/172 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN Q
Sbjct: 125 DIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNCQ 176


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 194/362 (53%), Gaps = 36/362 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPNIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ EIC AA++ +
Sbjct: 157 NPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEICSAAISYL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              + SI         PDF TGG I       V  Y  G+ G  ++ R  +E++   +  
Sbjct: 217 KGKDFSIY--------PDFATGGSID------VSKYNNGQRGGTLKIRAKIEKLDHKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    S + E I + I   +I + + + D +A +V I L   P   S   D  
Sbjct: 261 LVIREVPFTKTASSIQESITKAIEKGKIKIRK-VEDMTASEVEIHLHLSPNTSS---DKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P  + +  +LK  + H RE+L +    R   ++ 
Sbjct: 317 IDALYAFTDCEISISPNCCVIENNK-PHFLTISDVLKHSVDHTRELLKQELEIRKHELEE 375

Query: 386 RV 387
           ++
Sbjct: 376 QL 377


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 122/172 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN Q
Sbjct: 125 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNCQ 176


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/143 (56%), Positives = 113/143 (79%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQEI 199
            NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEV 143


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 41/361 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A I G  + + HPH
Sbjct: 113 FLDYASYVILERAVPHIDDGLKPVQRRILHSMKRMD---DGRYNKVANIAGHTM-QFHPH 168

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY E+R+++ A   L+ V 
Sbjct: 169 GDASICDALVQMGQKDL----LIDTQGNWGNIFTGDRAAAPRYIESRLSKFA---LETVF 221

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EPV  P+KFP LLA G  GIAVG+++ I  HN+ EIC+AA+  +
Sbjct: 222 NPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEICDAAINYL 281

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   K   + + PDFPTGG I       VE Y  G+ G  ++ R  VE++   +  
Sbjct: 282 --------KEKPFALYPDFPTGGSI------DVEKYNDGQRGGTLKVRAKVEKIDNKT-- 325

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    S L E I + +   ++ + + + D +A +V I L   P   S   D  
Sbjct: 326 LVIREVPFTKTASSLAESITKAVEKGKLKIRK-VEDMTASEVEIQLHLTPGTSS---DKT 381

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRM 380
           M++++  +D E     N  V+S  + PQ + +  +L+  + H     RRE+  R++    
Sbjct: 382 MDALYAFTDCEVSISPNCCVISDNK-PQFLTISDVLRHSVNHTQGLLRRELEIRKAELEE 440

Query: 381 Q 381
           Q
Sbjct: 441 Q 441


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KSAR VG+ +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 228/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K    ++   S  EN V  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENIVSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RCKESFSREVLKEDVENLL 393


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 114/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 227/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A  +         E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNAVRS---------ELLGETYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH ++VL    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQVSISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKVL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K     +   S  EN V  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKFLETISKEENIVSIILSEIL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RCKESFSREVLKEDVENLL 393


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYR 130
           ++ SAR VG+V+GKL PHGD   Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   YRISARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
            V
Sbjct: 181 TV 182


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 228/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K    ++   S  EN V  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENIVSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RHKESFSREVLKEDVENLL 393


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 79/142 (55%), Positives = 110/142 (77%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 5   RALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVR 64

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y+ 
Sbjct: 65  MAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDG 124

Query: 161 EDSEPVVFPSKFPNLLANGTSG 182
            +  P V P+K P LL NG+SG
Sbjct: 125 TEMIPAVMPTKVPTLLVNGSSG 146


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 111/147 (75%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALA 205
           G SGIAV MAT+IP HN+ E+    LA
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLA 147


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  R +PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 121/171 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 125 DIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 36/347 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV++ Q    +Y LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC AA++ +
Sbjct: 157 NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICSAAISYL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              + SI         PDFPTGG I       V  Y  G+ G  ++ R  +E++   +  
Sbjct: 217 KGKDFSIY--------PDFPTGGSID------VSKYNDGQRGGALKVRAKIEKLDNKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    S L E I + I   +I + + + D +A +V I L   P   S   D  
Sbjct: 261 LVIREVPFTKTASSLQESITKAIEKGKIKVRK-VEDMTASEVEIQLHLTPGTSS---DKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +++++  +D E     N  V+   + P  + +  +LK  + H +++L
Sbjct: 317 IDALYAFTDCEINISPNCCVIEDNK-PGFLTVSDVLKYSVNHTKDLL 362


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 122/171 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 125 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/146 (56%), Positives = 111/146 (76%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTY 158
           EAR+ +V+  +L  +DE+ V +  TY
Sbjct: 121 EARLQKVSHFLLNDIDENTVRYLATY 146


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/136 (58%), Positives = 108/136 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSHNVQEI 199
           AVGMAT+IP HN+ E+
Sbjct: 121 AVGMATNIPPHNLTEV 136


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 213/404 (52%), Gaps = 34/404 (8%)

Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+   A   ++NPE S E+LL+ +I    GPDFPTG ++V  R+ I E+YR GRG  
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSI 77

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE++    
Sbjct: 78  TMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTG 136

Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+
Sbjct: 137 QRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQ 194

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR     D  +  ++    + E
Sbjct: 195 IEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLMGLLEIDE 254

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E 
Sbjct: 255 IQANAILEMQLRRLAALERQKIVQEHDELQAKINEYNEILASPVRQRGIVSAELAAIVEK 314

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           +      G  R T       D +   + +I +E I V ++  G+I        R+ K   
Sbjct: 315 Y------GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGG 366

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576
             +     KE D +     + T   +L  +  G     KAY LP
Sbjct: 367 KGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 410


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 177/320 (55%), Gaps = 33/320 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+HAM EM       + K A I+G+ + + HPH
Sbjct: 26  FLDYASYVILERAVPAIEDGLKPVQRRILHAMKEMD---DGRYNKVANIIGQTM-QYHPH 81

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++++ L Q    +  LI  QGN+G+I  GDSAAA RY EAR + +A  IL    
Sbjct: 82  GDASIAEAIINLGQ----KELLIDMQGNWGDIRTGDSAAAARYIEARPSSLAHAIL--YS 135

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+    EPV FP KFP LLA G  GIAVG+AT I  HN  E+ E A+A++ 
Sbjct: 136 PQITSWQLSYDGRKKEPVTFPIKFPLLLAQGAEGIAVGLATKILPHNFCELIEGAIAVLQ 195

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
               ++         PDFPTGG++  S      +Y  G+ G R+R R  +E + + +  +
Sbjct: 196 GKTTNLL--------PDFPTGGLVDCS------AYNEGKRGGRIRLRARIEILDKKT--L 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            + EIPY    + LIE I       +I + + I D +AEDV I+  L P      PD+++
Sbjct: 240 AIREIPYGTTTNSLIESIIRAYERGKIKIKQVI-DNTAEDVEILVHLAPGQ---SPDVVL 295

Query: 327 ESIFMLSDMETRFPLNMNVL 346
           +++++ +D E     N  V+
Sbjct: 296 DALYVFTDCEIGISPNTCVI 315


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 246/523 (47%), Gaps = 80/523 (15%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HAM EM       F K A ++G  + + 
Sbjct: 25  ENWFLDYASYVILERAVPSVEDGLKPVQRRILHAMKEMD---DGRFNKVANVIGSTM-QF 80

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V L Q  +    LI  QGN+G++  GD AAA RY EAR+++ A  +  
Sbjct: 81  HPHGDASIGDAIVNLGQKDL----LIDTQGNWGDVRTGDDAAAARYIEARLSKFALEV-- 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           G +     ++ +Y+   +EP+  P KFP LLA G  GIAVG++T I  HN  E+ EA++ 
Sbjct: 135 GFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQGAEGIAVGLSTKILPHNFIELLEASIK 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +        K  ++ I PDFPTGG+I       V +Y  GR G +VR R  +EE  +  
Sbjct: 195 YL--------KGKKFEIFPDFPTGGMID------VANYNDGRRGGKVRVRAHIEE--KDK 238

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI--VLFPKNRSLDPD 323
             +++ ++PY V  + L+E I +     +I  ++ + D +A+DV I   L P    + PD
Sbjct: 239 KTLLIKDVPYGVTTTALMESIVKANDNGKIK-IKKVVDNTAKDVEIEVQLAP---GISPD 294

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           + +++++  +D E     N  V+ +   P+ + +  +L+      + +L R    R+  +
Sbjct: 295 ITIDALYAFTDCEISISPNACVI-IDDKPRFLTVSELLRSSADFTQALLKRELEIRLSEL 353

Query: 384 DRRVE------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             +              I K L   + + + +IA I     P    + R    E+    I
Sbjct: 354 QDKWHYTSLEKIFFEKGIYKELEQKHKDWEAVIAAIDKGFAPYKKNLKREITRED----I 409

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L  + +R++  Y++                 +N   +Q   I  +I++VK   +   D
Sbjct: 410 LKLTEKPVRRI--YRLD----------------INELNEQIKSIEADIKDVKHDLANMVD 451

Query: 492 L------------GRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                        G+ R    E+   D   +QQ  I    I V
Sbjct: 452 FTVAYYENLLKKYGKGRERITEIKTFDTIQVQQVAIANAKIYV 494


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 144/206 (69%), Gaps = 6/206 (2%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G+ D   S AA RYTE+R+T  ++++L  + +  V+++  ++
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNFD 61

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN+L NG++GIAVGMAT IP HN++E+  A + L+++P+ S++ LL+
Sbjct: 62  GTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLLD 121

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           +I GPD+PT   I+   E I + Y  G+G  R+RAR+  E+ G     I+VT +P+QV  
Sbjct: 122 HIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMRARYEREQ-GE----IIVTTLPHQVSG 176

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDES 305
           +R++E+IA  + AK++P++ED+RDES
Sbjct: 177 ARVLEQIAAQMQAKKLPMVEDLRDES 202


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 122/171 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 125 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 228/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K    ++   S  EN +  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENILSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RHKESFSREVLKEDVENLL 393


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 122/171 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 125 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 228/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K    ++   S  EN +  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENILSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RHKESFSREVLKEDVENLL 393


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/140 (58%), Positives = 108/140 (77%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 110/142 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLL 176
           +D  +    EP V PS+FP +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 226/439 (51%), Gaps = 56/439 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HA++EM       F K A +VG  + + 
Sbjct: 26  ENWFLDYASYVILERAVPAIEDGLKPVQRRIMHALNEMD---DGRFNKVANVVGSSM-QY 81

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+YD++V + Q    +  L   QGN+G+I  GD AAA RY E R+++  + ++ 
Sbjct: 82  HPHGDASIYDAIVNIGQ----KELLFDTQGNWGDIRTGDGAAAARYIEVRLSRFGKDVV- 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++D  +++ +Y+    EP+  P KFP LL  G  GIAVG++T I  HN  E+ EA++ 
Sbjct: 137 -FNDDTTEWQLSYDGRKREPITLPVKFPLLLTLGVEGIAVGLSTKILPHNFCELIEASIG 195

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++   E++I         PDF TGG++       V +Y  G  G +VR R  +EE  +  
Sbjct: 196 ILQGKEVTIY--------PDFLTGGLV------DVSNYNDGHRGGKVRVRAKIEEEDKK- 240

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPD 323
             +V+ +IP+    + LIE I +   A +I  ++ + D +A DV I   L P    + PD
Sbjct: 241 -MLVIRDIPFGTTTTSLIESIIKANDAGKIK-IKKVVDNTAADVEIQVHLAP---GVSPD 295

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           + M++++  ++ E     N  ++ +   P  + +  ILK        +L R         
Sbjct: 296 ITMDALYAFTECEVSISPNACII-IAEKPHFVGVTDILKYNTQQTVHLLQRELEI----- 349

Query: 384 DRRVEILKGLLIA-----------YLNIDE---IIAIIRNEDKPKPVMVSRF--SLTENQ 427
            +R+E+L+ +L             Y +I+E     A+IR  DK       +F   +T++ 
Sbjct: 350 -KRLELLEKILYGSLEKIFIENRIYRDIEECETFEAVIRTIDKGLEPFKPQFYREITDDD 408

Query: 428 VDAILNLRLRSLRKLEEYQ 446
           + A+  +R++ + K + ++
Sbjct: 409 IVALTEIRIKRISKYDSFK 427


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 184/334 (55%), Gaps = 32/334 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L Y    I+ERAIPD+ DG KPV RRI+  ++ M       F K A +VGE + KLHPH
Sbjct: 20  FLDYTSYVIRERAIPDVDDGLKPVQRRILQTLANMD---DGRFHKVANVVGETM-KLHPH 75

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GDQS++D+LV LA     +  LI  QGNFGNI  GD A+A RY E R++ +A   L   +
Sbjct: 76  GDQSIFDALVNLAN----KGYLIDRQGNFGNIFTGDQASAPRYIECRLSPLARETL--FN 129

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+ +A      
Sbjct: 130 KDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGAEGIAVGMATKIMPHNFGELLQA------ 183

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +I   +  E+++ PDFP GGII       V  Y  G G  R+R R  +E+    S  I
Sbjct: 184 --QIDYLRGQEFVLYPDFPRGGII------DVADYNHGNG--RIRCRAKLEQP--DSKTI 231

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+TE+PY +    LIE I +   A ++  +  I D +AE V + +    R +  +  +++
Sbjct: 232 VITELPYNLTTQALIESIEKAAKANKLK-IASINDYTAEKVEVEI-KLARGVLAEETIDA 289

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++  +D E     ++ V  +  +P+ M ++ +L+
Sbjct: 290 LYAFTDCELSVSPSL-VTIVDNMPRQMAVEEVLR 322


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 52/454 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 52  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 107

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 108 GDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 161

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ +  HN+ EIC+AA+  + 
Sbjct: 162 PKTTDWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLH 221

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ I PDFPTGG I       V  Y  G+ G  ++ R  +E+V   +  +
Sbjct: 222 GE--------EFRIYPDFPTGGAI------DVSKYNDGQRGGALKVRAKIEKVDNKT--L 265

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            V EIPY    + LI+ I + +   +I   + I D +A +V I+  L P    +  D  M
Sbjct: 266 AVREIPYSKTTATLIDSITKAVEKGKIKARK-IEDNTAAEVEILIHLAP---GVSSDKTM 321

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRMQ 381
           ++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR+    Q
Sbjct: 322 DALYAFSDCEINISPNCCVIEDNK-PGFLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQ 380

Query: 382 A---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAI 431
                     I+ R+   +    A   +DE IA +  +  P KP  +    +T + +  +
Sbjct: 381 LFFASLERIFIEERIYKERKFETAK-TMDEAIAFVDEKLTPFKPNFIR--EVTRDDILRL 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           + ++++ + K  + +    +  + AE  +ID  L
Sbjct: 438 MEIKMQRILKFNKDKADELIAKIKAEVAEIDKDL 471


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 189/346 (54%), Gaps = 34/346 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 44  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 99

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 100 GDASIGDALVQLGQKEL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 153

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A + 
Sbjct: 154 PKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLH 213

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I  SR      Y  G  G  VR R  + ++   + CI
Sbjct: 214 GEEFKLY--------PDFQTGGSIDVSR------YNDGERGGVVRVRAKISKLDNKTLCI 259

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
             +EIPY    S LI+ I + I   +I + + + D +A  V I+  L P    +  D  +
Sbjct: 260 --SEIPYGKTTSSLIDSILKAIEKGKIKIRK-VDDNTARKVEILIHLAP---GVSSDKTL 313

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++++  +D E     N  V+   + P  + +  +L++ + + R++L
Sbjct: 314 DALYAFTDCEVNISPNCCVID-NKKPHFLTVSDVLRKSVNNTRDLL 358


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 230/454 (50%), Gaps = 52/454 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 52  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 107

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 108 GDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 161

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ +  HN+ EIC+AA+  + 
Sbjct: 162 PKTTDWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLH 221

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ I PDFPTGG I       V  Y  G+ G  ++ R  +E+V   +  +
Sbjct: 222 GE--------EFRIYPDFPTGGAI------DVSKYNDGQRGGALKVRAKIEKVDNKT--L 265

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            V EIPY    + LI+ I + +   +I   + I D +A +V I+  L P    +  D  M
Sbjct: 266 AVREIPYSKTTATLIDSITKAVEKGKIKARK-IEDNTAAEVEILIHLAP---GVSSDKTM 321

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRMQ 381
           ++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR+    Q
Sbjct: 322 DALYAFSDCEINISPNCCVIEDNK-PGFLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQ 380

Query: 382 A---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAI 431
                     I+ R+   +    A   +DE IA +  +  P KP  +    +T + +  +
Sbjct: 381 LFFASLERIFIEERIYKERKFETAK-TMDEAIAFVDEKLTPFKPDFIR--EVTRDDILRL 437

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           + ++++ + K  + +    +  + AE  +ID  L
Sbjct: 438 MEIKMQRILKFNKDKADELIAKIKAEVAEIDKDL 471


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 118/153 (77%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPH
Sbjct: 2   YIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ +++
Sbjct: 62  GDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + VDF+  ++E   EP V P+++PNLL NG++G
Sbjct: 122 ETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 107/135 (79%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD
Sbjct: 2   GNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 62  SAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 121

Query: 185 VGMATSIPSHNVQEI 199
           VGMAT+IP HN+ E+
Sbjct: 122 VGMATNIPPHNLTEV 136


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 106/135 (78%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++ MSE+G+  G  +KKSARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ 
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           G GNFG+IDGD  A+ RYTEARM +++  +L+G+ ++ VDF D Y+  + EP V PS+FP
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 174 NLLANGTSGIAVGMA 188
           NLL +G+ GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 227/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTLLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGETYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K    H ++VL    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHADHLQKVL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+   I Y  +++I       +K    ++   S  EN V  IL+  L
Sbjct: 324 --KMELELQKSKILEK--IFYKTLEQIFI-----EKKIYKLLETISKEENIVSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RCKESFSREVLKEDIENLL 393


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/140 (58%), Positives = 108/140 (77%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 226/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGETYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   +R +IL+ +   Y  +++I       +K    ++   S  EN V+ IL+  L
Sbjct: 324 --KMELELQRSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENIVNIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
                      K +++NLL
Sbjct: 375 SYKESFSREVFKEDVENLL 393


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 238/468 (50%), Gaps = 54/468 (11%)

Query: 18  KAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           KAV  + +   +  +L YA   I ERA+P + DG KPV RRI+HAM    LD G  + K 
Sbjct: 31  KAVKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHAMKR--LDDGR-YNKV 87

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEA 134
           A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EA
Sbjct: 88  ANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDDAAAPRYIEA 142

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  H
Sbjct: 143 RLSKFALDVV--FNPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPH 200

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AA+A +   E  +         PDF TGG +  SR      Y  G  G  VR 
Sbjct: 201 NFNELCDAAIAYLHGEEFHLY--------PDFQTGGAVDVSR------YNDGERGGVVRV 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV-- 312
           R  + ++   + CI  +EIPY    S LI+ I + +   +I + + + D +A+ V I+  
Sbjct: 247 RAKISKIDNKTLCI--SEIPYGKTTSSLIDSILKAVEKGKIKVRK-VDDNTADKVEILVH 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           L P   S   D  +++++  +D E     N  V+   + P  + +  +L++ + H     
Sbjct: 304 LAPGASS---DKTLDALYAFTDCEVNISPNCCVIE-DKKPHFLSVGTVLRKSVDHTLGLL 359

Query: 368 RREVLFRR---------SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVM 417
           RRE+  +R         +S     I+ R+   +G   A  N+D   A I     P  P M
Sbjct: 360 RRELEIQRDETLETLHFASLEKIFIEERIYKDRGFEQAE-NMDAACAHIDERLTPFYPQM 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           V    +T++ +  ++ +++  + K  + +    +  L A+ E+ ++ L
Sbjct: 419 VR--EVTKDDILRLMEIKMARILKFNKDKADENIARLKADIEETENHL 464


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 200/368 (54%), Gaps = 42/368 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K A ++G  + K 
Sbjct: 20  ENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD---DGRFNKVANVIGNTM-KY 75

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+G+ I GDSAAA RY E R+++ A  ++ 
Sbjct: 76  HPHGDASIGDAMVQIGQKDL----LIDTQGNWGDPITGDSAAAARYIEGRLSKFALEVV- 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             + D  D++ +Y+  + EPV  P KFP LLA G  GIAVG+AT +  HN  E+ +A++ 
Sbjct: 131 -FNPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIELIDASIE 189

Query: 206 LI--DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           ++  + P I           PDFPTGG+   S+      Y  G+ G ++R R  + E+ +
Sbjct: 190 VLRGNRPNIL----------PDFPTGGLADFSQ------YNEGQRGGKIRVRAKISELDK 233

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAEDVRIV--LFPKNRS 319
            +  +V++EIPY    + LI+ I   I A       ++ I D +A++V IV  L P    
Sbjct: 234 KT--LVISEIPYSTTTTGLIDSI---IAANDKGKIKIKKIEDNTAKNVEIVIHLAP---G 285

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PDL +++++  +  ET    N  V+   + P  M ++ IL E   + + +L R    +
Sbjct: 286 ISPDLTIDALYAFTACETSISPNTCVIKKDK-PHFMSVNDILIESTNYTKALLKRELEIK 344

Query: 380 MQAIDRRV 387
           +  +  ++
Sbjct: 345 LHDLQEKI 352


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/156 (52%), Positives = 115/156 (73%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            ++A  ++  ++++ VDF D Y+  +  P     KF
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKFPTSCQPKF 163


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 110/142 (77%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR
Sbjct: 3   RALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTIVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y+ 
Sbjct: 63  MAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDG 122

Query: 161 EDSEPVVFPSKFPNLLANGTSG 182
            +  P V P+K P LL NG+SG
Sbjct: 123 TEMIPAVMPTKVPTLLVNGSSG 144


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 126/190 (66%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 8   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGNTNEKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 68  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +++  VDF   +++  SEP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 128 RLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATEIPPH 187

Query: 195 NVQEICEAAL 204
           ++ EI +  +
Sbjct: 188 HLGEIIDGVI 197


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 249/496 (50%), Gaps = 61/496 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I +RA+P   DG KPV RRI+H+M E   +    ++K A IVG  +   HPH
Sbjct: 26  FLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGRTMA-YHPH 81

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV L Q  +    LI  QGN+GN   GD AAA RY E R+T  A  ++   +
Sbjct: 82  GDASIGDALVGLGQKNL----LIDTQGNWGNPYTGDRAAAPRYIEGRLTPFAVDVV--FN 135

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +  ++  +Y+    EPV  P KFP LLA G  GIAVG++TSI  HN +E+CEA++A + 
Sbjct: 136 PETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELCEASIACLR 195

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             + ++         PDF TGGII       V  Y  G+ G +V+ R  +E+V   +  +
Sbjct: 196 GKKFTLY--------PDFFTGGII------DVSDYNDGQRGGKVKVRAKIEKVDNKT--L 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            + EIPY      LIE I +     +I  ++ + D +++ V I++  +  + DP + +++
Sbjct: 240 AIREIPYGTTTVSLIESIVKANDKGKIK-IKHVDDNTSQGVEILVHLQPGT-DPQVAIDA 297

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK----------EW-LAHRREVL---FR 374
           ++  +D E        V+ + + P+ + +  ILK          EW LA+  + L   + 
Sbjct: 298 LYAFTDCEKSLSPCTCVI-IDKHPKFVGVSDILKLNTEHTVKLLEWELANELKHLEDKWH 356

Query: 375 RSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
            ++     I++ V E++K       + ++II ++R    P    + R ++T+ ++  ++ 
Sbjct: 357 MTTLEKIFIEKEVYEVIK----KAKDREQIIRLVREGLTPYLKRLHRQTVTDEEIGKLIE 412

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ---IACEIREVKEIFSKST 490
           + +R +   +    + + D LL E E+     N  K ++NQ   I   +   K I  K  
Sbjct: 413 IPIRRISHYD----REKADQLLQELEE-----NIAKCKYNQEHIIDYAVNHFKNILKKYG 463

Query: 491 DLGRRRTTFCEVSRAD 506
           +   RRT   E  + +
Sbjct: 464 EGKERRTQIAEFGKVN 479


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 110/142 (77%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR
Sbjct: 5   RALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTIVR 64

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y+ 
Sbjct: 65  MAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDG 124

Query: 161 EDSEPVVFPSKFPNLLANGTSG 182
            +  P V P+K P LL NG+SG
Sbjct: 125 TEMIPAVMPTKVPTLLVNGSSG 146


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 110/142 (77%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR
Sbjct: 4   RALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTIVR 63

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y+ 
Sbjct: 64  MAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDG 123

Query: 161 EDSEPVVFPSKFPNLLANGTSG 182
            +  P V P+K P LL NG+SG
Sbjct: 124 TEMIPAVMPTKVPTLLVNGSSG 145


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 146/468 (31%), Positives = 231/468 (49%), Gaps = 59/468 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
            R  ++  +L YA   IK+RAIPD+ DG KPV RR++ A+ ++   +     K A +VG 
Sbjct: 48  FRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGN 104

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHG+ S+ D+LV LA    + Y  I+ QGNFGNI  G  AAA RY E  ++ + 
Sbjct: 105 TM-HYHPHGNASIEDALVVLAN---KEY-YITRQGNFGNILTGSPAAAGRYIECSLSPLG 159

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L   + D  +F DTY+    EPV  P+K P+LL  G+ GIAVGMAT I  HN  E+ 
Sbjct: 160 HEVL--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELL 217

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA        EI++ +  E+ + PDF  GG++       V  Y  G G   +RA+  +E 
Sbjct: 218 EA--------EIAVLRGEEFELYPDFQQGGLM------DVREYNDGNGKITLRAK--IEI 261

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           VGR    +++ EIP       L+  I +     +I  +  + D + + V I + P  R  
Sbjct: 262 VGRD---LIIREIPATTSTETLVASIEKAAEKNKI-KISSVNDYTTDKVEIKVVP-TRGY 316

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK-------EWLAH------ 367
           DP+  M+ ++M +D      +NM V+   R P  M +  +L+       E+L        
Sbjct: 317 DPEKTMQGLYMYTDCSVSISVNMTVIRENR-PVQMSVSEVLRRNADKLLEYLKRELEIDL 375

Query: 368 -RREVLFRRSS----FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++E LF   +    F    I +++E  K     Y  +   +A  R+        + R  
Sbjct: 376 AKQEDLFHAKTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAPFRH--------LLRRD 427

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           +T+  +D +L L +R + + +  + + EL  +LA+ E+I   L S K+
Sbjct: 428 VTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGSLKK 475


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 183/333 (54%), Gaps = 30/333 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +LAYA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLAYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR++Q A  ++   +
Sbjct: 104 GDASIGDALVQMGQKNL----LIDMQGNWGNILTGDRAAAPRYIEARLSQFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN  EIC+AA++ + 
Sbjct: 158 PKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEICQAAISYL- 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  +  E+ + PDFPTGG I       V  Y  G  G  ++ R  +E++   S  +
Sbjct: 217 -------RGEEFQLYPDFPTGGSID------VSKYNDGLRGGSIKVRAKIEKL--DSKTL 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+ EIPY    + LI+ I + I   +I   + + D +A +V I +   +  +  D  +++
Sbjct: 262 VIREIPYSKTTTSLIDSILKAIDKGKIK-AKKVDDNTAAEVEIQIHLAS-GVSSDKTIDA 319

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ++  SD E     N  V+   + P+ M +  +L
Sbjct: 320 LYAFSDCEVNISPNCCVIE-DQKPRFMTVSEVL 351


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 227/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +    L   E I I    +K    ++   S  EN +  IL+  L
Sbjct: 324 --KMELELQKSKILEKIFSKTL---EQIFI----EKKIYKLLETISKEENILSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           R         +K +++NLL
Sbjct: 375 RHKESFSREVLKEDVENLL 393


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 189/356 (53%), Gaps = 35/356 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLYS--KEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A  +         E L E Y + PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILRAVKS---------ELLGEAYKLYPDFPTGGIVD------VNEYADGNGKVLVRAKI- 214

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
             E    +  I++ E+P+      LI  I E  I K    +  I D + E+V I L  P 
Sbjct: 215 --ETTDDNKAILIKELPFGETTESLIASI-ERAIRKNYIKVSSINDFTTENVEIELTLP- 270

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +  + ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H ++VL
Sbjct: 271 -RGVYANEIIEKLYHYTNCQVSISVNLLLLS-DRYPVIYTVTDIIKFHAEHLQKVL 324


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 277/566 (48%), Gaps = 79/566 (13%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +++  ++ Y+ YA   I +RAIPD+ DG KPV RRI+H + ++         K A + G+
Sbjct: 4   IKYLYKDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYKI---HDGKLHKVANVAGQ 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD ++ D+LV +A         +  QGNFGNI  GD AAA RY E R++ +A
Sbjct: 61  TMA-YHPHGDAAIIDALVNMANKGF----FLDCQGNFGNIYTGDPAAAARYIETRLSPLA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           +  L   + D  +   +Y+  + EPV  P+K P +L  G SGIAVGM+T+I  HN  E+ 
Sbjct: 116 KDTL--FNPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIELL 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +A+++  +  I         PDF TGGI+       V  Y  GRG  ++RA+  +++
Sbjct: 174 QAEIAVLEGKDFEIY--------PDFITGGIMD------VSEYDKGRGRLKLRAKIDIQD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRI-VLFPKNR 318
                  +V++EI +      LI  I E   AKR  + ++ I D +A+ V I +  P+  
Sbjct: 220 ----PKTLVISEICHGTTTESLIRSIDE--AAKRGKIKIDSINDYTADKVEIEIKLPRGH 273

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSM---GRVPQVMPLDGILK---EWLAH--RRE 370
                 L++S++  +D E    +++N + M     +P    +D IL+   E L    ++E
Sbjct: 274 YAQD--LIDSLYAYTDCE----VSINCMCMVIKDHLPWETTVDEILRLHAELLKGYLKKE 327

Query: 371 VLFRRSSFRMQAIDRRVE--ILKGLLIAYLNI----DEIIAIIRNEDKPKPVMVSRFSLT 424
           +   +     +  D+ +E   ++  L  +L      D++ + + +  KP    +SR   T
Sbjct: 328 LELEKDRLLEKIFDKTLEQIFIENRLYKHLETVKSSDKLRSTVADSLKPFHEQLSRVP-T 386

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           ++ ++ +L + +R + K +  + + E+  L  E  +++  L S KQ        I+ +KE
Sbjct: 387 KDDIEKLLQIPIRRISKFDMDKNQEEIAGLRKELARVEKDLKSIKQ------FTIKYLKE 440

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           + SK  D+  RRT   E+   DK    +A+  KE    +    G++ +  S S  +   +
Sbjct: 441 LVSKYRDIYTRRTRVGEIQELDK----RAIATKELKVGIDLKSGFVGTKVSGSETIEGTN 496

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG 570
           F               D++L+L  DG
Sbjct: 497 F---------------DKLLVLYQDG 507


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 192/356 (53%), Gaps = 36/356 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILNA---------VKSELLGESYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K   AH +++L
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 191/344 (55%), Gaps = 30/344 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++    ++ +L YA   I ERA+P   DG KPV RRI+HAM EM       + K A ++
Sbjct: 8   VTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEMD---DGRYNKVANVI 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQ 138
           G+ + + HPHGD S+ D+LV + Q  +    L+  QGN+G+I+ GDSAAA RY E R+++
Sbjct: 65  GQAM-QYHPHGDASIGDALVNMGQKDL----LVDTQGNWGDINTGDSAAAPRYIEGRLSK 119

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  ++   +    +++ +Y+    EPV  P KFP LLA GT GIAVG+AT +  HN  E
Sbjct: 120 FALDVI--FNPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHNFNE 177

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A++ L+   E++I         PDF TGG +       V +YR G  G R+R R  +
Sbjct: 178 LIDASIELLRGNEVTIY--------PDFATGGTM------DVTNYRHGVKGGRLRVRVDI 223

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+V R    + +  +PY V    LIE I +   A +I  ++ I D +A+DV I +   + 
Sbjct: 224 EQVSRK--ILAIKNVPYGVTTENLIESIKKANDANKIK-VKKIIDNTAKDVEIQVHL-ST 279

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            ++P+  +++++  ++ E     N  V+ +   P  + ++ +LK
Sbjct: 280 GVEPEQTIDALYAFTNCEVSISPNACVI-LDDKPCFIKVEELLK 322


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/139 (58%), Positives = 105/139 (75%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVG 186
            P+K P LL NG+SGIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 180/338 (53%), Gaps = 36/338 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+PD+ DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 68  FLDYASYVILERAVPDIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 123

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 124 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 176

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ +  HN  E+C+AA++ +
Sbjct: 177 NPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELCDAAISYL 236

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E  +         PDFPTGG I  S+      Y  G+ G  VR R  +E++   S  
Sbjct: 237 RGKEFELY--------PDFPTGGAIDISK------YNDGQRGGTVRVRAKIEKL--DSKT 280

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI--VLFPKNRSLDPDLL 325
           +V+ E+P+    + L E I   I   +I     I D +A DV I   L P    +  D  
Sbjct: 281 LVIREVPFTKTAASLQESITRAIEKGKIKARRVI-DMTARDVEIQVQLSP---GISSDKT 336

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +++++  +D E     N  V+  G  P  + +  +LK 
Sbjct: 337 IDALYAFTDCEINISPNCCVID-GNKPAFLTISDVLKH 373


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 237/455 (52%), Gaps = 54/455 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC+AA++ +
Sbjct: 157 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVSCL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG-RGG-FRVRARWCVEEVGRGS 265
                      E+ + PDFPTGG I       V  Y  G RGG  +VRAR  VE++   S
Sbjct: 217 RGE--------EFHLYPDFPTGGSI------DVSKYNDGQRGGVLKVRAR--VEKL--DS 258

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPD 323
             +V+ E+P+    S L E I + +   ++ + + + D +A +V I L   P   S   D
Sbjct: 259 KTLVIREVPFTKTASSLQESITKAVEKGKLKIRK-VEDMTASEVEIQLHLTPGTSS---D 314

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             +++++  +D E     N  V+   + P+ + +  +L+  + H + +L R    R   +
Sbjct: 315 KTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKRELEIRKHEL 373

Query: 384 DRRV--EILKGLLI-----------AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           + ++    L+ + I              ++DE++A + ++ +P      R  +T + +  
Sbjct: 374 EEQLFYNSLERIFIEDRIYKERKFETARSLDEVVAFVDSKLEPYKKTFVR-EVTRDDILR 432

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +L ++++ + K  + +    +  + AE  +ID  L
Sbjct: 433 LLEIKMQRILKFNKDKADELIRKIKAEIAEIDKDL 467


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 230/454 (50%), Gaps = 59/454 (12%)

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR- 263
           ALIDNPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE++ + 
Sbjct: 1   ALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVEDIDKV 59

Query: 264 -GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P
Sbjct: 60  GGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVP 119

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ F ++ 
Sbjct: 120 EVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTVFELRK 178

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR------ 420
              R  IL+G  +A  NID +IA+I+    P                   MV R      
Sbjct: 179 ARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSC 238

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +L
Sbjct: 239 RPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRIL 298

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           NS  +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E + V IS
Sbjct: 299 NSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV-VTIS 350

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK Y L  
Sbjct: 351 HGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKT 410

Query: 578 GNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             +   S    G  +  L+ L+  + I T    D
Sbjct: 411 YEIPEASRAARGRPLVNLLPLSDGEYITTMLPVD 444


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 228/453 (50%), Gaps = 49/453 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+HAM    LD G  + K A IVG+ + K HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDR--LDDGR-YNKVANIVGDTM-KFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD+S+ D+LV L Q  +    LI  QGN+GNI  GD AAA RY EAR T  A  ++    
Sbjct: 62  GDRSIADALVGLGQKGL----LIDTQGNWGNILTGDPAAASRYIEARFTSFARDVV--FS 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ EA++A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYL- 174

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR---LGRGGFRVRARWCVEEVGRGS 265
                  +   + + PDFPTGG++  +      +YR    G G  R+RAR   E      
Sbjct: 175 -------RGQPFQLLPDFPTGGVMDAT------NYRDGERGTGRVRIRARILTE----SK 217

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDL 324
             + +TEIP+ V    LI+ I       +I +   I D +A+ V I V  P     DP+ 
Sbjct: 218 KLLRITEIPFGVTTEILIDSIVSAAEKGKIKIAR-IEDNTAQHVDILVHLPA--GADPEQ 274

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +++F  S  E     N  V+ +   P+ M +  IL+      +E+L +    R++ ++
Sbjct: 275 TRKALFAFSACEVSISPNACVI-VEEKPRFMCVSDILRYNTDSTKEILRQEQEIRLKELN 333

Query: 385 R--RVEILKGLLIA---YLNI------DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                  L+ + I    YL+I      +E++  I  E +P    + R  +T + +  +  
Sbjct: 334 EAWHQASLEKIFIENRIYLSIEDSETWEEVLGTIDRELQPFASRL-RAPITRDDLVRLTE 392

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           ++++ + K + ++    +  L  + E+    LN
Sbjct: 393 IKIKRISKFDAFKADQHIRQLEEDIEQTQKNLN 425


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 227/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILSA---------VKSELLGETYDIYPDFPTGGIVD------VNEYADGNGKILVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETLDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K    H +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHADHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   ++ +IL+ +   Y  +++I       +K    ++   S  EN V  IL+  L
Sbjct: 324 --KMELELQKSKILEKIF--YKTLEQIFI-----EKKIYKLLETISKEENIVSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           +         +K +++NLL
Sbjct: 375 KYKESFSREVLKEDVENLL 393


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 108/136 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNV 196
           SGIAVGMAT+IP HN+
Sbjct: 121 SGIAVGMATNIPPHNL 136


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 183/337 (54%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 47  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 102

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 103 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 156

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A + 
Sbjct: 157 PKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLH 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +  +         PDF TGG I  SR      Y  G  G  VR R  + ++   + CI
Sbjct: 217 GEDFQLY--------PDFQTGGSIDVSR------YNDGERGGVVRVRAKISKIDNKTLCI 262

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
             +EIPY    S LI+ I + I   +I + + + D +A  V I+  L P    +  D  +
Sbjct: 263 --SEIPYGKTTSSLIDSILKAIEKGKIKVRK-VDDNTAGKVEILVHLTP---GVSSDKTL 316

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 317 DALYAFTDCEVNISPNCCVID-NKKPHFLSVSKVLKK 352


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 110/146 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           ++   +A+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK H
Sbjct: 2   QKLSGFAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYH 61

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  +
Sbjct: 62  PHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADI 121

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +E+ V+F   Y+  + EP+V P  FP
Sbjct: 122 EEETVNFGPNYDGSEHEPLVLPDPFP 147


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 50/367 (13%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P L DGFKPV RRI+H+M E+       + K A IVG  + K 
Sbjct: 32  ETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMDELE---DGRYNKVANIVGNTM-KY 87

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++++L Q    +  LI  QG++GNI  GD AAA RY EAR+++ A  +L 
Sbjct: 88  HPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNILTGDDAAAPRYIEARLSKFALDVL- 142

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+  + EPV  P KFP LLA G  GIAVG++T I  HN  E+ +A++ 
Sbjct: 143 -FSPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFNELIDASVL 201

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            ++     +         PDFPT GI+  +      +Y  G  G R+R R  + +  R  
Sbjct: 202 YLEGKPFELY--------PDFPTAGIMDAA------TYNDGMRGGRIRVRARIAQ--RDK 245

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDL 324
             +V+TEIP+    S LI+ I +     +I +L+ + D +A+DV I++  PK   + PD 
Sbjct: 246 ATLVITEIPFGTTTSSLIDSILKANEKGKIKILK-VDDNTAKDVEILVHLPK--GISPDK 302

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
            +++++  +D E                 + PL  ++++   H        S    ++ D
Sbjct: 303 TIDALYAFTDCEL---------------SISPLCCVIEDNKPH----FIGVSDILRKSTD 343

Query: 385 RRVEILK 391
           R VEILK
Sbjct: 344 RTVEILK 350


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 120/171 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN+
Sbjct: 125 DIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 187/356 (52%), Gaps = 35/356 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  + EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLYS--KEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A  +         E L E Y + PDFPTGGI+       V  Y  G G   VRAR  
Sbjct: 171 ILSAVKS---------ELLGESYELYPDFPTGGIVD------VNEYADGNGKVLVRARI- 214

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
             E    +  I++ E+P+      LI  I E  I K    +  I D + E+V I L  P 
Sbjct: 215 --EPTDDNKAILIKELPFGETTESLIASI-ERAIRKNYIKVSSINDFTTENVEIELTLP- 270

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +    ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H +++L
Sbjct: 271 -RGVYASEVIEKLYHYTNCQVSISVNLLLLS-DRYPVIYTVTDIIKFHAEHLQKIL 324


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVGMAT+
Sbjct: 121 GSSGIAVGMATN 132


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDY 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDP 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 189/356 (53%), Gaps = 35/356 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLYS--KEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y + PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILRA---------VKSELLGEAYKLYPDFPTGGIVD------VNEYADGNGKVLVRAKI- 214

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
             E    +  I++ E+P+      LI  I E  I K    +  I D + E+V I L  P 
Sbjct: 215 --EPTDDNKAILIKELPFGETTESLIASI-ERAIRKNYIKVSSINDFTTENVEIELTLP- 270

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +  + ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H ++VL
Sbjct: 271 -RGVYANEIIEKLYHYTNCQVSISVNLLLLS-DRYPVIYTVTDIIKFHAEHLQKVL 324


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 144/205 (70%), Gaps = 4/205 (1%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  E +R
Sbjct: 120 VRAKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDM 335
           +V+  K  ++  ++++ ++F  + M
Sbjct: 179 VVIELKRDAMS-EIVLNNLFKSTTM 202


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 107/134 (79%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYN 159
            ++++ VDF D Y+
Sbjct: 121 DLEKETVDFVDNYD 134


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 188/356 (52%), Gaps = 35/356 (9%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNAM-KYHPHGDTSIYEALVNMANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y + PDFPTGGI+       V  Y  G G   VRAR  
Sbjct: 171 ILSA---------VKSELLGESYELYPDFPTGGIVD------VNEYADGNGKVLVRARI- 214

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
             E    +  I++ E+P+      LI  I E  I K    +  I D + E+V I L  P 
Sbjct: 215 --EPTDDNKAILIKELPFGETTESLIASI-ERAIRKNYIKVSSINDFTTENVEIELTLP- 270

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +    ++E ++  ++ +    +N+ +LS  R P +  +  I+K    H ++VL
Sbjct: 271 -RGVYASEVIEKLYHYTNCQVSISVNLLLLS-ERYPVIYTITDIIKFHAEHLQKVL 324


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 235/455 (51%), Gaps = 54/455 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 132 FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 187

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 188 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 240

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC+AA+  +
Sbjct: 241 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVGCL 300

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG-RGG-FRVRARWCVEEVGRGS 265
                      E+ + PDFPTGG I       V  Y  G RGG  +VRAR  VE++   S
Sbjct: 301 RGE--------EFHLYPDFPTGGSI------DVSKYNDGQRGGVLKVRAR--VEKL--DS 342

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPD 323
             +V+ E+P+    S L E I + +   ++ + + + D +A +V I L   P   S   D
Sbjct: 343 KTLVIREVPFTKTASSLQESITKAVEKGKLKIRK-VEDMTASEVEIQLHLTPGTSS---D 398

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      R   +
Sbjct: 399 KTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKMELEIRKHEL 457

Query: 384 DRRV--EILKGLLI-----------AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           + ++    L+ + I              ++DE++A + ++ +P      R  +T + +  
Sbjct: 458 EEQLFYNSLERIFIEDRIYKERKFETARSLDEVVAFVDSKLEPYKKTFVR-EVTRDDILR 516

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +L +R++ + K  + +    +  + AE  +ID  L
Sbjct: 517 LLEIRMQRILKFNKDKADELIQKIKAEIAEIDKDL 551


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 144/439 (32%), Positives = 225/439 (51%), Gaps = 49/439 (11%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A     +   I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A         +  E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILSA---------VKSELLGETYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K    H +++L    
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHADHLQKIL---- 323

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             +M+   +R +I + +   Y  +++I       +K    ++   S  EN V  IL+  L
Sbjct: 324 --KMELELQRNKIFEKIF--YKTLEQIFI-----EKKIYKLLETISKEENIVSIILSEVL 374

Query: 437 RSLRKLEEYQIKSELDNLL 455
           +          K +++NLL
Sbjct: 375 KYKESFSREVFKEDVENLL 393


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/167 (49%), Positives = 116/167 (69%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G      +
Sbjct: 5   IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYT
Sbjct: 65  VKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG
Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 195/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 44  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 99

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 100 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDDAAAPRYIEARLSKFALDVV--FN 153

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A + 
Sbjct: 154 PKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLH 213

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I  SR      Y  G  G  VR R  + ++   + CI
Sbjct: 214 GEEFHLY--------PDFQTGGSIDVSR------YNDGERGGVVRVRAKISKIDNKTLCI 259

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
             +EIPY    S LI+ I + I   +I + + + D +A+ V I+  L P    +  D  +
Sbjct: 260 --SEIPYGKTTSSLIDSILKAIEKGKIKVRK-VDDNTADKVEILVHLAP---GVSSDKTL 313

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L      R+ V    S  R +   +R
Sbjct: 314 DALYAFTDCEVNISPNCCVID-NKKPHFLSVSVVL------RKSVDNTLSLLRQELNIQR 366

Query: 387 VEILKGLLIAYL 398
            E L+ L  A L
Sbjct: 367 NETLETLHFASL 378


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 107/140 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 111/143 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYN 159
            ++A  ++  ++++ VDF D Y+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYD 150


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 104/134 (77%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSH 194
           SGIAVGMAT+IP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 142/199 (71%), Gaps = 4/199 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +V
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+
Sbjct: 120 RAKTHIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRV 178

Query: 312 VLFPKNRSLDPDLLMESIF 330
           V+  K  ++  ++++ ++F
Sbjct: 179 VIELKRDAMS-EIVLNNLF 196


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 236/461 (51%), Gaps = 66/461 (14%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 132 FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 187

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 188 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 240

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC+AA+  +
Sbjct: 241 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVGCL 300

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG-RGG-FRVRARWCVEEVGRGS 265
                      E+ + PDFPTGG I       V  Y  G RGG  +VRAR  VE++   S
Sbjct: 301 RGE--------EFHLYPDFPTGGSI------DVSKYNDGQRGGVLKVRAR--VEKL--DS 342

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPD 323
             +V+ E+P+    S L E I + +   ++ + + + D +A +V I L   P   S   D
Sbjct: 343 KTLVIREVPFTKTASSLQESITKAVEKGKLKIRK-VEDMTASEVEIQLHLTPGTSS---D 398

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      +M+  
Sbjct: 399 KTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALL------KMELE 451

Query: 384 DRRVEILKGLLIAYL-------------------NIDEIIAIIRNEDKPKPVMVSRFSLT 424
            R+ E+ + L    L                   ++DE++A + ++ +P      R  +T
Sbjct: 452 IRKHELEEQLFYNSLERIFIEDRIYKERKFETARSLDEVVAFVDSKLEPYKKTFVR-EVT 510

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            + +  +L +R++ + K  + +    +  + AE  +ID  L
Sbjct: 511 RDDILRLLEIRMQRILKFNKDKADELIRKIKAEIAEIDKDL 551


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 120/171 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++  +LQ
Sbjct: 65  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 DIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/298 (38%), Positives = 166/298 (55%), Gaps = 42/298 (14%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRG 59

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 60  KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 119

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           D +RIV+  K  ++  ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ 
Sbjct: 120 DGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVR 177

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--- 420
           HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P   K  ++SR   
Sbjct: 178 HRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWD 237

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                          + LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 238 LGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 295


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 242/465 (52%), Gaps = 59/465 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV AVS  +  E  +L YA   I ERA+P   DGFKPV RRI+HAM EM       F K 
Sbjct: 24  NVIAVSGMY--ENWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEMD---DGRFNKV 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEA 134
           A I+G+ + + HPHGD S+ DS+V + Q  +    LI  QGN+G+I  GDS+AA RY EA
Sbjct: 79  ANIIGQTM-QYHPHGDASIGDSIVNMGQKDI----LIETQGNWGDIRTGDSSAAPRYIEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ A  ++   +    +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  H
Sbjct: 134 RLSKFALDVV--FNPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLSTKILPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ +A + ++ N +I I         PDFPTGG+      +    Y  G  G ++R 
Sbjct: 192 NFCELIKACIDVLKNKKIEIY--------PDFPTGGM------ADFSEYNQGLRGGKIRV 237

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VL 313
           R  +EE  + +  +++  IP+    + LIE I +    K    ++ + D +A+DV I V 
Sbjct: 238 RAKIEEGEKRT--LLIKNIPFGTTTTGLIESIIKA-NDKGKIKVKKVVDNTAKDVEIEVQ 294

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +S  PD+ +++++  +D E     N  V+   + P  +P++ ILK+ +     +L 
Sbjct: 295 LAAGQS--PDITIDALYAFTDCEISISPNACVIIEDK-PIFLPVNEILKKNVEDTLGLLE 351

Query: 374 RRSSFRMQAIDRRVEILKGLLIA-----------YLNIDEI---IAIIRNEDKPKPVMVS 419
           R          RR E+++ +L +           Y NI+E     A++   DK       
Sbjct: 352 RELEI------RRGELMEKILFSSLEKIFIENRIYRNIEECETWEAVLETIDKGLEPFKP 405

Query: 420 RF--SLTENQVDAILNLRLRSLRKLEEY---QIKSELDNLLAEKE 459
           +F   +T++ +  +  ++++ + K +++   ++  +L++ LA+ E
Sbjct: 406 QFYREITQDDIIRLTEIKIKRISKFDKFKADELMRKLEDELAQVE 450


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 191/356 (53%), Gaps = 36/356 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEMH---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G  + K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYS--KEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           I  A  +         E L E Y I PDFPTGGI+       V  Y  G G   VRA+  
Sbjct: 171 ILSAVKS---------ELLGETYDIYPDFPTGGIVD------VNEYADGNGKVLVRAK-- 213

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPK 316
           +E +   +  IV+ E+P+      LI  I E  I K    +  I D +AE+V I L  P 
Sbjct: 214 IETIDEKT--IVIRELPFGETTESLISSI-EKAIRKNYIKVSSINDFTAENVAIELSLP- 269

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +    ++E ++  ++ +    +N+ +LS  R P V  +  ++K    H +++L
Sbjct: 270 -RGVYASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHADHLQKIL 323


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 105/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYN 159
           + VDF D Y+
Sbjct: 122 ETVDFVDNYD 131


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPK 165


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 105/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYN 159
           + VDF D Y+
Sbjct: 122 ETVDFVDNYD 131


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 118/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 29/312 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + 
Sbjct: 24  QDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGNTM-QY 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 80  HPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILTGDDAAAPRYIEARLSKFALDVV- 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EP+  P KFP LLA GT GIAVG++T I  HN  E+ EA++A
Sbjct: 135 -FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAVGLSTKILPHNFIELIEASIA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N    +         PDFPT GI+       V  Y  G  G RVR R  + ++ + +
Sbjct: 194 YLKNKPFELY--------PDFPTAGIM------DVSGYNDGARGGRVRVRAKISQLDKST 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CI  TEIP+    + LI+ I +     +I  ++ + D +A +V I++   N +  PD  
Sbjct: 240 LCI--TEIPFTTTTTSLIDSILKANEKGKIK-IKKVDDNTAANVEILVHLPNGT-SPDKT 295

Query: 326 MESIFMLSDMET 337
           +++++  +  ET
Sbjct: 296 IDALYAFTACET 307


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 199/376 (52%), Gaps = 43/376 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K +S  +  +E +L YA   I ERAIP + DG KPV RRI+H+M E+       + K
Sbjct: 7   ESIKKISGMY--QEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMRELE---DGRYNK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A IVG  + K HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY E
Sbjct: 62  VANIVGNTM-KYHPHGDASITDAIVQIGQKDL----LIDTQGNWGNILTGDRAAAARYIE 116

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T+ A  ++   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG++T I  
Sbjct: 117 ARLTKFALEVV--YNPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTKILP 174

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A++A +           ++ + PDF TGG I       V  Y  G  G +VR
Sbjct: 175 HNFIELIDASIAYLRGK--------KFTLYPDFQTGGYIE------VADYNDGMRGGKVR 220

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + +V + +  + ++EIP+      LI+ I +     +I + + I D +A DV I++
Sbjct: 221 IRAKISQVDKTT--LKISEIPFSTTTGSLIDSILKANDKGKIKIRK-IEDNTAADVEILI 277

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             +  +  PD  +++++  +D E     N  V+   + P+ + +  ILK           
Sbjct: 278 HLQTGT-SPDKTIDALYAFTDCEVSLSPNACVIDEQK-PEFLSVSEILK----------- 324

Query: 374 RRSSFRMQAIDRRVEI 389
           R +   +Q + R +EI
Sbjct: 325 RNTDNTVQLLKRELEI 340


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 231/456 (50%), Gaps = 54/456 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDMQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC+AA++ +
Sbjct: 157 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAISYL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E ++         PDFPTGG I       V  Y  G+ G  ++ R  VE++   +  
Sbjct: 217 RGEEFNLY--------PDFPTGGSID------VSKYNDGQRGGVLKVRAKVEKLDNKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    + L E I + +   ++ +   + D +A +V I L   P   S   D  
Sbjct: 261 LVIREVPFTKTANTLQESITKAVEKGKLKIRR-VEDMTASEVEIQLHLTPGTSS---DKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR---------------E 370
           +++++  +D E     N  V+   + P+ + +  +L+    H +               E
Sbjct: 317 IDALYAFTDCEINISPNCCVIRDNK-PEFLTISDVLRNSAEHTKALLKLELEIRKHELEE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            LF  S  R+   DR  +  K       +IDE++A + ++ +P      R  +T + +  
Sbjct: 376 QLFYNSLERIFIEDRIYKERK--FETAKDIDEVVAFVDSKLEPYKKTFIR-EVTRDDIIR 432

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +L ++++ + K  + +    +  + AE  +ID  LN
Sbjct: 433 LLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLN 468


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 141/200 (70%), Gaps = 4/200 (2%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++ +I GPDFPTGGII   ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  E +R
Sbjct: 120 VRAKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 311 IVLFPKNRSLDPDLLMESIF 330
           +V+  K  ++  ++++ ++F
Sbjct: 179 VVIELKRDAMS-EIVLNNLF 197


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 226/447 (50%), Gaps = 58/447 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A +VG  + + HPH
Sbjct: 58  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANVVGHTM-QFHPH 113

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 114 GDASIGDALVQLGQKNL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 166

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN  EIC AA+A +
Sbjct: 167 NPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEICNAAIAYL 226

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   K  ++ + PDFPTGG I       V  Y  G+ G  ++ R  +E+V   +  
Sbjct: 227 --------KGEDFHLYPDFPTGGSID------VSKYNDGQRGGVLKVRAKIEKVDNKT-- 270

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           + V EIP+    S LIE I + +   +I    +ED     AE + I L P    +  D  
Sbjct: 271 LAVREIPFSKNTSTLIESITKAVEKGKIKARKIEDNTSAQAE-ILIHLAP---GVSSDKT 326

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRM 380
           M++++  +D E     N  V+   + P  + +  +L+          R+E+L R+     
Sbjct: 327 MDALYAFTDCEINISPNCCVIE-DQKPCFLTVSDVLRHSADRTMGLLRQELLIRKHELEE 385

Query: 381 QA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDA 430
           Q          I+ R+   +    A  N DE++A I ++ +P KP  +    +T   +  
Sbjct: 386 QLFFNSLERIFIEERIYKERKFEQAK-NQDEVVAFIDSKLEPFKPSFIR--EVTREDIVR 442

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +L ++++ + K      K + D L+A+
Sbjct: 443 LLEIKMQRILKYN----KDKADELIAK 465


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++ M E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 186/346 (53%), Gaps = 39/346 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA   IKERAIPD+ DG KPV RRIIH + EM       F K A +VG  + + HPH
Sbjct: 12  YLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEMD---DGKFHKVANVVGHSM-RYHPH 67

Query: 90  GDQSVYDSLVRLAQ--PFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQG 146
           GD S+Y++LV +A    F++R      QGNFGN + GD AAA RY E R+   A+ +L  
Sbjct: 68  GDASIYEALVNMANFDLFIER------QGNFGNALTGDRAAAGRYIECRIFPFAKRVL-- 119

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            + +  ++ D+Y+  + EPV FP+K P +L  G  GIAVGM+T +  HN  E+ +A  ++
Sbjct: 120 YNPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLDAMKSV 179

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +        K   +++ PD PTGGI+       V+ Y  G G   VRA+    +  R   
Sbjct: 180 L--------KGESFMLFPDLPTGGILD------VQEYGDGTGSISVRAKLDTSDPKR--- 222

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TE+PY V    +IE I       R+ +   I D +++   I +     +   D + 
Sbjct: 223 -IVITELPYGVTSEAMIESIEAAARKGRLKVAA-INDYTSDKANIEVCLARGTYSKD-IE 279

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++++  +  E +  +N  V+    +P++MP+  I++    H R++L
Sbjct: 280 DALYAHTSCEQKISVNALVIK-DNMPEIMPVSAIVR---FHVRQLL 321


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 122/177 (68%), Gaps = 1/177 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRY 131
           +KS R V +  GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   QKSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 233/456 (51%), Gaps = 54/456 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +ICEAA+  +
Sbjct: 157 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICEAAVQYL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            N         ++ + PDFPTGG I  ++      Y  G+ G  ++ R  +E++   +  
Sbjct: 217 RNE--------DFHLYPDFPTGGSIDAAK------YNDGQRGGVLKVRAKIEKLDNKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    + L E I + +   +I + + + D +A +V I L   P   S   D  
Sbjct: 261 LVIREVPFTKTANSLQESITKAVEKGKIKVRK-VEDMTASEVEIQLHLTPGTSS---DKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR---------------E 370
           +++++  +D E     N  V+   + P+ + +  +L+  + H +               E
Sbjct: 317 IDALYAFTDCEINISPNCCVIEDNK-PKFLTISDVLRNSVEHTKALLKMELEIRKHELEE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            LF  S  R+  I+ R+   +    A  N+DE++A +  +  P      R  +T   +  
Sbjct: 376 QLFYNSLERI-FIEERIYKERKFETA-RNLDEVVAFVDAKLDPYKKTFIR-EVTREDILR 432

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +L ++++ + K  + +    +  + AE  +ID  L+
Sbjct: 433 LLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS 468


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 195/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P+KFP LL  G  GIAVG+++ I  HN+ EIC+AA+  + 
Sbjct: 158 PKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEICQAAIHYL- 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPTGG I       VE Y  G+ G  ++ R  +E++   +  +
Sbjct: 217 -------KGEPFTLYPDFPTGGSID------VEKYNDGQRGGTLKVRAKIEKLDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + I   +I   +   + +AE ++++ L P    +  D  ++
Sbjct: 262 VIKEIPFSKTTTTLIDSILKAIDKGKIKARKVDDNTAAEVEIQVHLSP---GISSDKTID 318

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P  + +  +L      R  V       R +   RR 
Sbjct: 319 ALYAFSDCEINISPNCCVIEDNK-PVFLTVSDVL------RHSVDSTMGLLRKELEIRRN 371

Query: 388 EILKGLLIAYL 398
           E+L+ L  A L
Sbjct: 372 ELLEQLFFASL 382


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 198/373 (53%), Gaps = 45/373 (12%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            E+ +L YA   I ERA+P + DG KPV RR +HA+ EM       F K A ++G  + +
Sbjct: 19  FEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHALKEMD---DGRFNKVANVIGSTM-Q 74

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELIL 144
            HPHGD S+ D++V + Q    +  L+  QGN+G++  GDSAAA RY E R+++    +L
Sbjct: 75  YHPHGDASIGDAIVNIGQ----KELLLDIQGNWGDVRTGDSAAAPRYIEVRLSKFGHEVL 130

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              +ED  +++ +Y+    EPV  P+KFP +L  G  GIAVG++T I  HN  E+CEA++
Sbjct: 131 --FNEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGAEGIAVGLSTKILPHNFIELCEASI 188

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             + N          +++ PDF TGG+I       V +Y  G  G +V+ R  + EV + 
Sbjct: 189 KYLKNE--------PFVLYPDFLTGGLI------DVSNYNDGARGGKVKMRAKISEVDKK 234

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDP 322
           +  + +TEIP+      LIE I +   + +I  ++ + D +A++V I+  L P   +   
Sbjct: 235 T--LKITEIPFSTTTGSLIESIIKANDSGKIK-IKKVEDNTAKNVEIIIHLAPNTST--- 288

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+ +++++  ++ E     N  V+ + + P  + +  ILK             +   +  
Sbjct: 289 DITIDALYAFTNCEVSVSPNA-VVIVDQKPHFLGVSDILK-----------NSTDQTLHL 336

Query: 383 IDRRVEILKGLLI 395
           + R +EI KG L+
Sbjct: 337 LRRELEIRKGELL 349


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 117/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 237/455 (52%), Gaps = 50/455 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  + K A IVG  + + HPH
Sbjct: 30  FLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD--LDDG-RYNKVANIVGHTM-QYHPH 85

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +L    
Sbjct: 86  GDASIGDAMVQIGQKDI----LIDTQGNWGNILTGDRAAAPRYIEARLSKFALEVLYS-- 139

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EPV  P KFP LLA G  GIAVG++T    HN  E+ +A++  + 
Sbjct: 140 PKLTEWQLSYDGRKQEPVNLPVKFPMLLAQGAEGIAVGLSTRFLPHNFNELIDASILHL- 198

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + I PDFPTGGI      + V +Y  G+ G RVR R  + ++ + +  +
Sbjct: 199 -------KGKTFKIFPDFPTGGI------ADVSNYSDGKRGGRVRIRAKINQLDKNT--L 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+ EIPY    S LI+ I +    K    ++ I D +A +V I++  P N S  PD  ++
Sbjct: 244 VINEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAAEVEILIHLPNNMS--PDRTID 300

Query: 328 SIFMLSDMETRF-PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           +++  +  E    PL   ++     P  + +  +L+    H   +L R    ++  ++ +
Sbjct: 301 ALYAFTQCENSLAPLGCVIIDHK--PIFLGVSEVLRRSTDHTLHLLKRELEIKLDELEEQ 358

Query: 387 VEI--LKGLLIA---YLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                L+ + I    Y +I+E      +I  I    KP    + R ++TE  +  +  +R
Sbjct: 359 WHFASLERIFIENRIYRDIEEEETWQGVIQAIDKGLKPHTKHLKR-AVTEEDIVRLTEIR 417

Query: 436 LRSLRKLEEYQIKSELDNLLAE----KEKIDSLLN 466
           ++ + K +  + + ++D L A+    K  +D+L++
Sbjct: 418 IKRISKFDIDKAQQKIDALEADIAQVKHHLDNLID 452


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 154/235 (65%), Gaps = 5/235 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG  I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIM-GKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  E +RI
Sbjct: 120 RAKAEIEE-ENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           V+  K +  +P++++  ++  + M+  F + M  L +   PQV+ +  +L  +++
Sbjct: 179 VIELK-KDANPNVVLNLLYKHTKMQDTFGVIMLAL-VNNEPQVLNIKQVLNYYIS 231


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 32/359 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P L DGFKPV RRI+H+M E+       + K A IVG  + K HPH
Sbjct: 30  FLDYASYVILERAVPALEDGFKPVQRRIMHSMDELE---DGRYNKVANIVGNTM-KYHPH 85

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++++L Q    +  LI  QG++GNI  GD AAA RY EAR+++ A  +L    
Sbjct: 86  GDASIGDAIIQLGQ----KELLIDTQGSWGNILTGDDAAAPRYIEARLSKFALDVL--FS 139

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+  + EPV  P KFP LLA G  GIAVG++T I  HN  E+ +A++  ++
Sbjct: 140 PKVTQWQKSYDGRNDEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFNELIDASVLYLE 199

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDFPT GI+  +       Y  G  G R+R R  + +  R    +
Sbjct: 200 GKPFELY--------PDFPTAGIMDAT------GYSDGMRGGRIRVRARIAQ--RDKSTL 243

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+TEIP+    S LI+ I +     +I +L+ + D +A +V I++  PK   + PD  ++
Sbjct: 244 VITEIPFGTTTSSLIDSILKANEKGKIKVLK-VDDNTAANVEILVHLPK--GISPDKTID 300

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           +++  +D ET       V+   R P  + +  ILK+      E+L +    ++  ++++
Sbjct: 301 ALYAFTDCETSVSPLCCVIEGSR-PLFIGVSDILKKSTDRTVEILKKELEVKLDDLEQK 358


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 117/164 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            F   +++ + EP V P+ FPNLL N +SGI+ G AT IP HN+
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNL 167


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 154/235 (65%), Gaps = 5/235 (2%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG  I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIM-GKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  E +RI
Sbjct: 120 RAKSEIEE-ENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           V+  K +  +P++++  ++  + M+  F + M  L +   PQV+ +  +L  +++
Sbjct: 179 VIELK-KDANPNVVLNLLYKHTKMQDTFGVIMLAL-VNNEPQVLNIKQVLNYYIS 231


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/454 (29%), Positives = 233/454 (51%), Gaps = 50/454 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 47  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 102

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 103 GDASIGDALVQMGQKDL----LVDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 156

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC++A+  + 
Sbjct: 157 PKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDSAIKYL- 215

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K  ++ + PDFPTGG I       V  Y  G+ G  ++ R  +E++   +  +
Sbjct: 216 -------KGEDFQLYPDFPTGGAID------VSKYNDGQRGGVLKVRAKIEKLDNKT--L 260

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + I   +I       + +AE ++++ L P    +  D  M+
Sbjct: 261 VIREIPFSKTTTTLIDSILKAIDKGKIKAKRVDDNTAAEVEIQVHLAP---GVSSDKTMD 317

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRMQA 382
           +++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR     Q 
Sbjct: 318 ALYAFSDCEINLSPNCCVIEDNK-PVFLTVSDVLRHGVDRTMGLLRKELQIRRGELLEQL 376

Query: 383 ---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAIL 432
                    I++R+   K    A  N+D+ IA +  +  P KP  +    +T + +  ++
Sbjct: 377 FFASLERIFIEQRIYKEKKFEQA-ANMDDAIAFVDQKLTPFKPDFIR--EVTRDDILRLM 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            ++++ + K  + +    +  + AE  +I++ LN
Sbjct: 434 EIKMQRILKFNKDKADELIARIKAEVAEIENDLN 467


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 193/353 (54%), Gaps = 32/353 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P L DG KPV RRI+H+M +M       F K+A I+G  + + HPH
Sbjct: 31  FLEYASYVILERAVPALLDGLKPVQRRILHSMKQMD---DGRFNKAANIIGHTM-QYHPH 86

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQVAELILQGVD 148
           GD ++ ++LV L Q  +    LI  QGN+G+I  GDSAAA RY EAR+++ A  +    +
Sbjct: 87  GDAAIGEALVNLGQKDL----LIETQGNWGDISTGDSAAAPRYIEARLSKFALEV--AFN 140

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EPV+ P KFP LLA G  GIAVG+AT I  HN  E+ EA++  + 
Sbjct: 141 NQTTEWQLSYDGRKKEPVLLPMKFPLLLAQGAEGIAVGLATRIMPHNFIELLEASIDTLR 200

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+++         PDFPTGG+      +   +Y  G  G R+  R  +E + + +  +
Sbjct: 201 GKEVNLL--------PDFPTGGM------ADFSNYNEGLRGGRINVRAKIEILEKKT--L 244

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+  IPY    + +++ I +     +I  ++ + D +A+DV IV+  P N S  PD+ ++
Sbjct: 245 VIRSIPYTTTTANVMDSIVKANENGKIK-IKRVVDNTAKDVEIVVELPPNVS--PDVTID 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +++  +D E     N  V+ +   P+ + ++ ILK    H   +L R    ++
Sbjct: 302 ALYAFTDCEISISPNACVI-IDEKPRFLGVNEILKISAKHTVGLLKRELEIKL 353


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 189/666 (28%), Positives = 293/666 (43%), Gaps = 121/666 (18%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   IK+RAIPD+ DG KPV RRI+H++ E+       F K A IVG  + K HPH
Sbjct: 12  FLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFEVD---DGKFHKVANIVGHCM-KYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+Y +LV LA   +     I  QGNFGN I GD A+A RY E R+   A+ +L    
Sbjct: 68  GDASIYSALVVLANKDL----FIDKQGNFGNPITGDEASAARYIECRILPFAKKVLYS-- 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               ++ D+Y+  + EPVVFPSK P LL  G  GIAVGM+T I  HN +E+  A ++   
Sbjct: 122 PQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVLRAVVS--- 178

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+  E    + + PDFP GG++       V  Y+ G G   +RA+   ++  R    I
Sbjct: 179 --ELKGEP---FQLFPDFPNGGLV------DVSDYQDGLGKVLIRAKLDTKDPKR----I 223

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           ++ EIP+      LI  I       R+ + + I D ++E V I +    R +    +++S
Sbjct: 224 IIKEIPFGTTTESLIASIEAAARKGRVKISQ-INDYTSEAVEIEI-KLARGVYTKEVVDS 281

Query: 329 IFMLSDMETRFPLNMNVLSMG-----RVPQVMP---------LDGILKEWLAHRREVLFR 374
           +F  +D E    +N+ V+  G      VP+V+          L+  LK   A  +E +  
Sbjct: 282 LFAYTDCEYSVSVNLLVIKDGLPTQMTVPEVIRYHARQLVAVLEAELKVEEADLKEKIHA 341

Query: 375 RSSFRM---QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+  R+   + I +R+E +K         + +I+ +    KP    + R  +TE  V+ +
Sbjct: 342 RTLERIFIEERIYKRIEEMK-------TRETVISAVIEGFKPFKKEIPR-EVTEEDVERL 393

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L + +R +   +  + + EL  L    +++   L       N +A  I  ++ +   +  
Sbjct: 394 LKIPIRRISLYDIEKARKELAELQGRLKEVRYHLK------NLVAYAIGFIEGVLKDTAG 447

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RRT      + D                       +R + +  +DL           
Sbjct: 448 RFPRRTKVGRFEKVD-----------------------VREVAARDLDLRYDAKTGYLGY 484

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLP------AGNLLSGRGHGEAIQLLID 595
             K GDSL      +  DR+L++  DG  +   +P       G +  G    E    L D
Sbjct: 485 DLKGGDSL---FAVNQYDRVLIIRGDGTYRVTDVPEKMFVGKGLMYCGIADKEE---LAD 538

Query: 596 LNHN---QDIVTAFVYDSTCK-----------LLVVSSKGNAFIVEESEIIANTRKGKTF 641
            + +   QD VT  +Y   C            LL   +K  AF   E + I    K K  
Sbjct: 539 CHFSIVYQDTVTKHLYIKRCTIEQFILEKDYDLLPEGAKPLAFTTREDQEIVLNYKPKPR 598

Query: 642 LKVSSE 647
           LK+  E
Sbjct: 599 LKILEE 604


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/130 (58%), Positives = 105/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYN 159
           + VDF D ++
Sbjct: 122 ETVDFVDNHD 131


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 29/312 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + 
Sbjct: 24  QDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGNTM-QY 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 80  HPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILTGDDAAAPRYIEARLSKFALDVV- 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EP+  P KFP LLA GT GIAVG++T I  HN  E+ EA++A
Sbjct: 135 -FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAVGLSTKILPHNFIELIEASIA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +        K   + + PDFPT GI+       V  Y  G  G RVR R  + ++ + +
Sbjct: 194 YL--------KKKPFELYPDFPTAGIM------DVSGYNDGARGGRVRVRAKISQLDKST 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CI  TEIP+    + LI+ I +     +I  ++ + D +A +V I++   N +  PD  
Sbjct: 240 LCI--TEIPFTTTTTSLIDSILKANEKGKIK-IKKVDDNTAANVEILVHLPNGT-SPDKT 295

Query: 326 MESIFMLSDMET 337
           +++++  +  ET
Sbjct: 296 IDALYAFTACET 307


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 29/312 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + 
Sbjct: 24  QDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGNTM-QY 79

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 80  HPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILTGDDAAAPRYIEARLSKFALDVV- 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EP+  P KFP LLA GT GIAVG++T I  HN  E+ EA++A
Sbjct: 135 -FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAVGLSTKILPHNFIELIEASIA 193

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +        K   + + PDFPT GI+       V  Y  G  G RVR R  + ++ + +
Sbjct: 194 YL--------KGKSFELYPDFPTAGIM------DVSGYNDGARGGRVRVRAKISQLDKST 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
            CI  TEIP+    + LI+ I +     +I  ++ + D +A +V I++   N +  PD  
Sbjct: 240 LCI--TEIPFTTTTTSLIDSILKANEKGKIK-IKKVDDNTAANVEILVHLPNGT-SPDKT 295

Query: 326 MESIFMLSDMET 337
           +++++  +  ET
Sbjct: 296 IDALYAFTACET 307


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 103/131 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SG 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDL 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 106/132 (80%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVG AT+
Sbjct: 121 GSSGIAVGRATN 132


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 191/360 (53%), Gaps = 39/360 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 68  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 123

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 124 GDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 177

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ +  HN  EIC+AA+  + 
Sbjct: 178 PKTTDWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKVLPHNFNEICDAAVHYL- 236

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPTGG I       V  Y  G+ G  ++ R  ++++   +  +
Sbjct: 237 -------KGEPFQLYPDFPTGGAID------VSKYNDGQRGGALKVRAKIDKLDNKT--L 281

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
           V++EIP+      LI+ I + +   +I   + + D ++ +V I+  L P   S   D  M
Sbjct: 282 VISEIPFSKTTGSLIDSITKAVEKGKIKARK-VDDVTSANVEILVHLAPGTSS---DKTM 337

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRMQ 381
           ++++  SD E     N  V+   + P  + +  +L+  +       R+E++ R+     Q
Sbjct: 338 DALYAFSDCEINISPNCCVIEDNK-PVFLTISDVLRHSVDRTMGLLRKELMIRKGELEEQ 396


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 108/137 (78%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 2   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 61

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 62  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 121

Query: 140 AELILQGVDEDAVDFRD 156
           A  ++  ++++ VDF D
Sbjct: 122 AHELMADLEKETVDFVD 138


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 186/344 (54%), Gaps = 29/344 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M E+       + K A +VG  + K HPH
Sbjct: 31  FLDYASYVILERAVPHINDGLKPVQRRILHSMRELE---DGRYNKVANVVGNTM-KYHPH 86

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V+L Q    +  LI  QGN+GNI  GD AAA RY E+R+T+ A  ++    
Sbjct: 87  GDASIGDAMVQLGQ----KELLIDTQGNWGNILTGDGAAASRYIESRLTKFALDVV--FS 140

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               ++ ++Y+  + EPV  P KFP LLA G  GIAVG++  +  HN  E+C+A +A + 
Sbjct: 141 PKVTEWANSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSCRVLPHNFNELCDACVAALR 200

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  +LL     PDFP GGI+  +       Y  G+ G +VR R  +E V + +  +
Sbjct: 201 GEPF---QLL-----PDFPQGGIMDAA------DYNDGQRGGKVRVRAKIETVPKRN-MV 245

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            +TEIP+      + E I       +I  ++ + D +AE V I++   + + DPD  +++
Sbjct: 246 RITEIPFGTTAGSVQESIVAANEKGKIK-IQKVEDNTAEFVEILVHLPSGT-DPDQAIQA 303

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++  +D E    +N  V+   + P  + +  ILK    + +++L
Sbjct: 304 LYAFTDCEVSISVNAVVIQDDK-PNFISVTEILKSNAEYAKQLL 346


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 108/137 (78%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 140 AELILQGVDEDAVDFRD 156
           A  ++  ++++ VDF D
Sbjct: 121 AHELMADLEKETVDFVD 137


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 230/465 (49%), Gaps = 70/465 (15%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A +VG  + K HPH
Sbjct: 12  FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGHCM-KYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++LV LA     +   IS QGNFGNI  GD A+A RY E R+T+  + +L   +
Sbjct: 68  GDASIGNALVVLAN----KELFISKQGNFGNIYTGDEASAARYIECRITEFGKSLL--YN 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +   +  +Y+  + EP+VF +K P +L  G  GIAVGM+T I  HN++EI EA +  I+
Sbjct: 122 PNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEILEAEIQCIE 181

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG+I       V  Y  G G   VRA+    +  R    I
Sbjct: 182 GK--------PFALYPDFPTGGLID------VSEYGDGLGKVLVRAKLDTSDEKR----I 223

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           ++ E+P+      +I  I     + ++ + E I D +AE V I L  P  R +    +++
Sbjct: 224 LIKELPFGSTTESMITSIENASKSGKVKVSE-INDYTAETVEIELKLP--RGVYSQDVVD 280

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG-----------ILKEWLAHRREVLFRRS 376
           S++  ++ E     N+ V+    +PQ M +             ILK+ L + R +L  R 
Sbjct: 281 SLYAFTECEQSISCNLLVIK-NNLPQQMTVTDVIKNHVKQLLQILKDELEYERAMLQERL 339

Query: 377 SFRM-------QAIDRRVEILK---GLLIAYLNIDEII--AIIRNEDKPKPVMVSRFSLT 424
             R        + I +++E +K   G++ A L   E     +IR+             +T
Sbjct: 340 HMRTLERIFIEERIYKKIETMKTASGVITAVLKGFEPFRAELIRD-------------IT 386

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           E+ VD +L + +R +   +  + + E + +    ++I  LL + K
Sbjct: 387 EDDVDKLLKIPIRRISLYDINKNRQETEEIQKRLKEIAKLLKNLK 431


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 230/449 (51%), Gaps = 50/449 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQMGQKDL----LVDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I  HN+ +IC+AA++ + 
Sbjct: 158 PKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDICDAAISYL- 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K  ++ I PDFPTGG I       V  Y  G+ G  ++ R  +E++   +  +
Sbjct: 217 -------KGEDFCIYPDFPTGGSID------VSKYNDGQRGGTLKVRAKIEKLDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + I   +I   +   + +AE ++++ L P    +  D  ++
Sbjct: 262 VIKEIPFSKTTTTLIDSILKAIDKGKIKARKVDDNTAAEVEIQVHLAP---GVSSDKTID 318

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFRMQA 382
           +++  SD E     N  V+   + P  + +  +L+  +       R+E+L R      Q 
Sbjct: 319 ALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHSVDSTMGLLRKELLIRMKELNEQL 377

Query: 383 ---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAIL 432
                    I+ R+   K    A  N+D  +A I +  +P KP  +    +T + +  ++
Sbjct: 378 FFASLEKIFIEERIYKDKKFEEAK-NMDAAVAHIDSRLEPFKPTFIR--EITRDDILRLM 434

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            ++++ + K  + +    +  +LAE + I
Sbjct: 435 EIKMQRILKFNKDKADELIAKILAEIKDI 463


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/130 (60%), Positives = 101/130 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/126 (63%), Positives = 100/126 (79%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA R
Sbjct: 6   AYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMR 65

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATS
Sbjct: 66  YTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATS 125

Query: 191 IPSHNV 196
           IP H +
Sbjct: 126 IPPHRM 131


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 103/130 (79%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSA   RYTE RM+++A  ++  +++
Sbjct: 63  GDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADLEK 122

Query: 150 DAVDFRDTYN 159
           +  DF D YN
Sbjct: 123 ETDDFVDNYN 132


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 34/346 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P ++DG KPV RRI+HAM    +D G  + K A IVG+ + + HPH
Sbjct: 62  FLDYASYVILERAVPHVQDGLKPVQRRILHAMK--AVDDGR-YNKVANIVGQTM-QYHPH 117

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 118 GDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAAGRYIEARLSKFALDVV--FN 171

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +   ++  +Y+  + EPV  P KFP LLA G  GIAVG+A+ I  HN  E+  AA+A + 
Sbjct: 172 KKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASKILPHNFIELINAAIAHLQ 231

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     ++++ PDFPT G+I  SR      Y  G  G  V+ R  + ++ + +  +
Sbjct: 232 G--------RDFVLYPDFPTAGMIDVSR------YNDGLRGGTVKVRARISKIDKRT--L 275

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY      + + I +     +I + + + D +AE V I+  + P   S   D  +
Sbjct: 276 AITEIPYTTTTESIKDSIVKANEKGKIKIRK-VDDNTAEKVEIIVQVAPDESS---DKTI 331

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++++  +D E     N  V+   + P  + +  IL+    H RE+L
Sbjct: 332 DALYAFTDCEVSIAPNACVICDDK-PHFLGVSEILRRSAEHTRELL 376


>gi|332880940|ref|ZP_08448610.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681114|gb|EGJ54041.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 911

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 236/462 (51%), Gaps = 64/462 (13%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGFKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL-ALI 207
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN+ EIC+AA+  L 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNLNEICDAAVNYLH 217

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D P         + + PDF TGG I  S+ +       GRGG  V+ R  + ++   +  
Sbjct: 218 DEP---------FQLYPDFLTGGSIDVSKYN-----DGGRGGV-VKVRAKITKIDNKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           + + EIPY    + LI+ I + I   +I + + + D +A +V I+  L P    +  D  
Sbjct: 261 LAIREIPYGKTTTTLIDSILKAIEKGKIKVRK-VEDNTAAEVEILVHLTP---GVSSDKA 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFR- 379
           +++++  +D E     N  V+   + P  + +  +LK  + +     R+E+L R+   + 
Sbjct: 317 LDALYAFTDCEVSISPNCCVID-DKKPCFLTVSEVLKRSVDNTLGLLRKELLIRKGELQE 375

Query: 380 ------MQAI--------DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
                 ++ I        DR  E  K +  A  +IDE +          P M+    +T+
Sbjct: 376 SLHFASLEKIFIEERIYKDRNFEQAKDMDAACAHIDERLTPFY------PQMIR--EVTQ 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           + +  ++++++  + K  + +    +  +  E  +ID  L++
Sbjct: 428 DDILKLMDIKMARILKFNKDKANDAIARMKDEIARIDRDLDN 469


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 199/383 (51%), Gaps = 38/383 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +N     + + + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM 
Sbjct: 10  LSGNNDEALSHNQTIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD 69

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
                 F K+A ++G  + K HPHGD S+ D++V++ Q    +  LI  QGN+G+   GD
Sbjct: 70  ---DGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLLIDCQGNWGDPTTGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RY E R+++ A  ++   + D  +++ +Y+  + EPV  P KFP LLA G  GIA
Sbjct: 122 SAAAPRYIEGRLSKFANDVV--FNPDTTEWQLSYDGRNREPVTLPVKFPLLLAQGAEGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT I  HN  E+ + ++ ++     ++         PDFPTGG+      + V +Y 
Sbjct: 180 VGLATKIMPHNFVELLDGSIEVLRGGRPNLV--------PDFPTGGL------ADVSAYN 225

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
            G  G +V+ R  +EE  R    + +TEIPY      LI+ +   I A       ++ I 
Sbjct: 226 EGMRGGKVKVRARIEE--RDKKTLAITEIPYGTTTGGLIDSV---IAANDKGKIKIKKIE 280

Query: 303 DESAEDVRIV--LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           D +A  V IV  L P    + PD+ +++++  +D E     N  V+   + P  M ++ +
Sbjct: 281 DNTAATVEIVVHLAP---GISPDVTIDALYAFTDCEVSISPNTCVIRDDK-PHFMSVNDV 336

Query: 361 LKEWLAHRREVLFRRSSFRMQAI 383
           L E   H + +L +    R+  +
Sbjct: 337 LIENTKHTKGLLKQELEIRLNEL 359


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299284|ref|YP_004441205.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 196/371 (52%), Gaps = 42/371 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RR+++ M  M         K A+IVG  +   HPH
Sbjct: 59  FLDYASYVILERAVPHIEDGLKPVQRRVLYTMHLME---NGTLHKVAKIVGATMA-YHPH 114

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EA+++  A  IL G  
Sbjct: 115 GDASINDALVQLGQ----KGYLIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEILFG-- 168

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A + 
Sbjct: 169 DKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACAYLR 228

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
               ++         PDFPTGGII       V+ Y  G+ G +V++R  +E +      +
Sbjct: 229 GEPFTLY--------PDFPTGGIID------VDRYNDGKRGGQVKSRARIERI--EDRVL 272

Query: 269 VVTEIPYQVQKSRLIEKIAE-----LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            V ++P+    S LI+ I +     LI  KRI   +D+  E+A D+RI L P   S D  
Sbjct: 273 SVRDLPFGKTTSTLIDSILKANDKGLIKIKRI---DDMTAETA-DIRIYL-PVGVSADK- 326

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             ++ ++  +D E     N  V+   + P+ + +  +L+  + H RE+L  +   R+Q  
Sbjct: 327 -TIDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVKHTRELL--QEDLRLQLH 382

Query: 384 DRRVEILKGLL 394
           DR+ E +   L
Sbjct: 383 DRQEEYMGASL 393


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 246/514 (47%), Gaps = 61/514 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
             E +L YA   I ERA+P   DG KPV RRI+H+M E+       + K A ++G  + K
Sbjct: 46  FSEWFLDYASYVILERAVPHANDGLKPVQRRILHSMRELE---DGRYNKVANVIGNTM-K 101

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
            HPHGD S+ D++V+L Q  +    LI  QGN+GN   GDSAAA RY EAR+++ A  ++
Sbjct: 102 YHPHGDASICDAMVQLGQKDL----LIDTQGNWGNTFTGDSAAAARYIEARLSKFALDVV 157

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              +    ++  +Y+  + EP   P KFP LLA G  GIAVG+A  I  HN  E+ +  +
Sbjct: 158 --FNPKTTNWLASYDGRNKEPETLPVKFPLLLAQGVEGIAVGLACKILPHNFIELIDGCI 215

Query: 205 ALI--DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           + +    PEI           PDFPTGGI      + V  Y  G+ G RV+ R  +E   
Sbjct: 216 SFLRKQTPEIV----------PDFPTGGI------ADVSEYNNGKRGGRVKVRARME--A 257

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           R    + +TE+P+    + LI+ I       +I  +  + D +A+ V I+++  + S DP
Sbjct: 258 RKKNLLAITELPFGKTTTSLIDSILSANDKGKIK-ISRVEDNTADKVEILIYLPSGS-DP 315

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           +   ++++  +D E     N+ V+   + P       +L       RE+L      ++  
Sbjct: 316 ETAEQALYAFTDCEVSVSTNICVIENEK-PHFFAAVDLLYLATEKTRELLRMELEIQLAE 374

Query: 383 IDRRVEI--LKGLLIA---YLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           ++ +     L+ + I    Y  I+E      +I  + +  KP   +  R  +T + +  +
Sbjct: 375 LEEKWHFSSLEKIFIEKRIYRRIEEEETWEGVIQTVDDGLKPYKKLFKR-EITRDDILRL 433

Query: 432 LNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           L ++++ + K + ++       L++ +AE +K    L     +W        ++K+ + K
Sbjct: 434 LEIKIKRISKYDSFKADEFIQSLEDAIAETQKNLKYLTKYTIKW------FNDLKKKYGK 487

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
               GR R T  E++   K    + +I  E + V
Sbjct: 488 ----GRERRT--ELASFKKVAAHEVVIANETLYV 515


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 8   AYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 67

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 68  YTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 127

Query: 191 IPSH 194
           IP H
Sbjct: 128 IPPH 131


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 196/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 43  FLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 98

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +    +
Sbjct: 99  GDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LDTVFN 152

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+C+AA+  + 
Sbjct: 153 PKTTQWQASYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCQAAIHYL- 211

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPTGG I  SR      Y  G+ G  ++ R  +E++   +  +
Sbjct: 212 -------KGEPFRLFPDFPTGGSIDASR------YNDGQRGGSIKVRAKIEKLDNKT--L 256

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LIE I + +   +I       + +AE ++++ L P    +  D  ++
Sbjct: 257 VIREIPFSKNTTTLIESILKAVDKGKIKAKRVDDNTAAEVEIQVHLAP---GISSDKTID 313

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P+ + +  +L      R  V       RM+   R+ 
Sbjct: 314 ALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVL------RHNVDSTMGLLRMELQIRKD 366

Query: 388 EILKGLLIAYL 398
           E+L+ L  + L
Sbjct: 367 ELLEQLFFSSL 377


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 105/131 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 5   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 65  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 124

Query: 146 GVDEDAVDFRD 156
            ++++ VDF D
Sbjct: 125 DLEKETVDFVD 135


>gi|333029667|ref|ZP_08457728.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
 gi|332740264|gb|EGJ70746.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
          Length = 906

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 206/392 (52%), Gaps = 39/392 (9%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N+   EN+K   L    E  +L YA   I ERA+P + DG KPV RRI+H+M  M    
Sbjct: 18  NNSSSPENIKH-HLTGMYESWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD--- 73

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  + + HPHGD S+ D+L++L Q    +  LI  QGN+GNI  GD AA
Sbjct: 74  DGRYNKVANIVGHTM-QFHPHGDASIGDALIQLGQ----KDFLIDCQGNWGNILTGDRAA 128

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+
Sbjct: 129 APRYIEARLSKFALEVV--FNPKTTEWQKSYDGRNKEPITLPLKFPLLLAQGAEGIAVGL 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ++ I  HN  E+CEA++  ++          ++ + PDF TGG +  +R      Y  G 
Sbjct: 187 SSKILPHNFNELCEASINYLNGK--------KFTLYPDFQTGGYVDVAR------YNDGE 232

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  V+ R  + ++   +  I  TEIP+    + +I+ I + +   +I + + + D ++ 
Sbjct: 233 RGGNVKVRAKINKIDNRTLSI--TEIPFGKTTTSVIDSILKAVDKGKIKIRK-VDDNTSA 289

Query: 308 DVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +V I++  P   S   D  +++++  +D E     N  V+   + P  + +  +LK+ + 
Sbjct: 290 NVEIIVHLPSGVS--SDKTIDALYAFTDCEVSISPNCCVIDDNK-PHFLTVSDVLKKSVD 346

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +  ++L +          R+ E+ +GL +A L
Sbjct: 347 NTLDLLQKELEI------RKSELEEGLHLASL 372


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 105/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYN 159
           + VDF D ++
Sbjct: 121 ETVDFVDNHD 130


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 241/497 (48%), Gaps = 73/497 (14%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++G  + K 
Sbjct: 25  ENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEMD---DGRFNKAANVIGNTM-KY 80

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+G+ I GDSAAA RY EAR+++ A  +  
Sbjct: 81  HPHGDASIGDAMVQIGQKDL----LIDCQGNWGDPITGDSAAAPRYIEARLSKFANEV-- 134

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             + D   ++ +Y+  ++EP+  P KFP LLA G  GIAVG+AT +  HN  E+ +A++ 
Sbjct: 135 AFNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNFVELLDASME 194

Query: 206 LI--DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           ++  + P I           PDF TGG+      +   +Y  G  G +VR R  + E  +
Sbjct: 195 VLRGNRPNIL----------PDFFTGGM------ADFSAYNEGMRGGKVRVRAKITE--K 236

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLD 321
               +V+TEIP+      +I+ I       +I  ++ I D +A +V IV  L P    + 
Sbjct: 237 DKKTLVITEIPFSTTTGSVIDSILSANDKGKI-KIKKIEDNTAANVEIVVQLAP---GIS 292

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           PD+ +++++  +  E     N  ++  G  P  M ++ IL E   H + +L +    R+ 
Sbjct: 293 PDVTIDALYAFTSCEVSISPNTCIIK-GDKPHFMSVNDILTENTMHTKALLKQELEIRLN 351

Query: 382 AIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKP------KPVMVSRF 421
            +  ++     LL  ++              N D ++A++ N  +P      +P+    F
Sbjct: 352 ELQEKI-FFSSLLKIFIQEGMYKHPEYENSGNFDAVVAVLNNLFEPFLPQLYRPIQPEDF 410

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                       L  + +  +  + +K   + + A  ++I  + N  +   +      ++
Sbjct: 411 K----------KLIDKPMSSITRFDVKKADEQMQALADEIKVVKNHLRHLTDYAIAWFQK 460

Query: 482 VKEIFSKSTDLGRRRTT 498
           +K+ + K    GR+R T
Sbjct: 461 LKDKYGK----GRQRKT 473


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 76/142 (53%), Positives = 106/142 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+GK
Sbjct: 2   LETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L+
Sbjct: 62  YHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVV 167
            +D+D VDF D Y+  + EPVV
Sbjct: 122 NIDKDTVDFVDNYDASEQEPVV 143


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 243/490 (49%), Gaps = 65/490 (13%)

Query: 4   DNISNSNTLVEENVK---AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           DN ++SN   E N        L    +  +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 19  DNNAHSNYQPETNPHDSITHHLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILHS 78

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M       + K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GN
Sbjct: 79  MKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGN 130

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G
Sbjct: 131 ILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+++ I  HN+ EIC+AA+  +      +         PDF TGG I  S+ + 
Sbjct: 189 VEGIAVGLSSKILPHNLNEICDAAVNYLHGEPFQLY--------PDFLTGGSIDVSKYN- 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
                 GRGG  V+ R  + ++   +  + + EIPY    + LI+ I + I   +I + +
Sbjct: 240 ----DGGRGGV-VKVRAKITKIDNKT--LAIREIPYGKTTTTLIDSILKAIEKGKIKVRK 292

Query: 300 DIRDESAEDVRIV--LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            + D +A +V I+  L P    +  D  +++++  +D E     N  V+   + P  + +
Sbjct: 293 -VEDNTAAEVEILVHLTP---GVSSDKALDALYAFTDCEVSISPNCCVID-DKKPCFLTV 347

Query: 358 DGILKEWLAH-----RREVLFRRSSFR-------MQAI--------DRRVEILKGLLIAY 397
             +LK  + +     R+E+L R+   +       ++ I        DR  E  K +  A 
Sbjct: 348 SEVLKRSVDNTLGLLRKELLIRKGELQESLHFASLEKIFIEERIYKDRNFEQAKDMDAAC 407

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            +IDE +          P M+    +T++ +  ++++++  + K  + +    +  +  E
Sbjct: 408 THIDERLTPFY------PQMIR--EVTQDDILKLMDIKMARILKFNKDKANDAIARMKDE 459

Query: 458 KEKIDSLLNS 467
             +ID  L++
Sbjct: 460 IARIDRDLDN 469


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 202/373 (54%), Gaps = 42/373 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  G SAAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDTQGNWGNILTGSSAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+AA++ +
Sbjct: 157 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELCDAAVSCL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   +  E+ + PDFPTGG I       V  Y  G+ G  V+ R  +E+  + +  
Sbjct: 217 --------RGEEFHVYPDFPTGGSI------DVSKYNDGQRGGTVKVRAKIEK--QDNKT 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V+ +IP+      LI+ I + +   +I + + + D +A +V I+  L P    +  D  
Sbjct: 261 LVIKDIPFSKTSETLIDSITKAVEKNKIKVRK-VEDLTAANVEILVHLAP---GVSSDKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P+ + +  +L++  + R+ +   ++   +    R
Sbjct: 317 LDALYAFTDCEINISPNCCVIEDNK-PKFLTVSDVLRQ--SARQTMRLMKTELEI----R 369

Query: 386 RVEILKGLLIAYL 398
           R E+++ L  + L
Sbjct: 370 RNELMEQLFFSSL 382


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 195/364 (53%), Gaps = 40/364 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HA+ EM       F K A ++G+ + + 
Sbjct: 57  ENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVANVIGQTM-QF 112

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ ++LV + Q    +  L   QG++G++  GD AAA RY E R+++ A+  + 
Sbjct: 113 HPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRLSKFAQDAI- 167

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++   +++ +Y+    EP+  P KFP LLA G  GIAVG++T I  HN  E+ +A++ 
Sbjct: 168 -YNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFNELIDASIN 226

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++ +  +S        + PDF TGG+I       V +Y  G  G +VR R  +EEV +  
Sbjct: 227 ILKDKPVS--------LFPDFQTGGLI------DVSNYNDGHRGGKVRVRAKIEEVDKK- 271

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR------DESAEDVRIVLFPKNRS 319
             + + ++PY V  S+LI+ I +     +I +    R      D +A+DV I++  +   
Sbjct: 272 -ILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEILVHLQP-G 329

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK---EWLAH--RREVLFR 374
           + PD+ +++++  +D E     N  V+ +G  P  + +  IL+       H  +RE+  R
Sbjct: 330 VSPDVTIDALYAFTDCEVSISPNACVI-IGDKPHFVSVTDILRVNTHQTVHLLQRELEIR 388

Query: 375 RSSF 378
           RS  
Sbjct: 389 RSEL 392


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 50/381 (13%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G  + K HPH
Sbjct: 12  FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM-KYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++LV LA     +   I  QGNFGNI  GD A+A RY E R+ + A+ I    +
Sbjct: 68  GDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNEFAKTIF--YN 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI EA  A + 
Sbjct: 122 PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEKAFLS 181

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG+I       V  Y  G G   VRA+    +  R    I
Sbjct: 182 GK--------SFALFPDFPTGGLI------DVSEYEDGLGKVLVRAKLDTSDEKR----I 223

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+ E+P+      +I  I     A ++ + E I D + E+V I L  P  R +    +++
Sbjct: 224 VIRELPFGSTTESMINSIEAASKAGKVKISE-ISDYTGENVEIELKLP--RGVYSADVVD 280

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLD----------GILKEWLAHRREVLFRRSS 377
           +++  ++ E   P N+ V+      Q+   D           ILK+ L + R +L  R  
Sbjct: 281 ALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERAMLTERLH 340

Query: 378 FRM-------QAIDRRVEILK 391
            R        + I +++E +K
Sbjct: 341 LRTLERIFIEERIYKKIETMK 361


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 102/130 (78%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VD+ D Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 115/160 (71%), Gaps = 1/160 (0%)

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  
Sbjct: 1   LRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGV 60

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   
Sbjct: 61  LAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSS 119

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RD
Sbjct: 120 GKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|226327144|ref|ZP_03802662.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
 gi|225204362|gb|EEG86716.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
          Length = 270

 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLM 326
           ++T +P+QV  ++++E+IA L+ AK++PL+ED+RDES  +   R+V+ P++  +D + +M
Sbjct: 1   MITALPHQVSGAKVLEQIAALMRAKKLPLVEDLRDESDHENPTRLVIVPRSNRVDLEQVM 60

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +F+ +D+E  + +N+N++ +   P V  L  IL EWL +RR+ +  R + R++ + RR
Sbjct: 61  YYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYRRQTVTNRLNHRLEKVLRR 120

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           +EILKGLLIAYLNIDE+I IIR+ED+PK  ++ RF L++ Q +AIL LRLR L KLEE +
Sbjct: 121 LEILKGLLIAYLNIDEVIEIIRHEDEPKAELMRRFELSDIQAEAILELRLRHLAKLEEIK 180

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQ 470
           +K+E D L  E++ I+ LL+S ++
Sbjct: 181 LKAESDELEKERDSIEKLLSSPRR 204


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 194/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQMGQKDL----LVDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN+ EICEAA+  + 
Sbjct: 158 PKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEICEAAIHYLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                 EK   Y   PDFPTGG I       VE Y  G+ G  ++ R  +E++   +  +
Sbjct: 218 G-----EKFQLY---PDFPTGGSI------DVEKYNDGQRGGTLKVRAKIEKLDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I   I   +I   +   + +AE ++++ L P    +  D  ++
Sbjct: 262 VIKEIPFSKTTTTLIDSILRAIDKGKIKAKKVDDNTAAEVEIQVHLAP---GVSSDKTID 318

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P  + +  +L      R  V       R +   R+ 
Sbjct: 319 ALYAFSDCEINVSPNCCVIEDDK-PGFLTISDVL------RHNVDSTMGLLRKELEIRKN 371

Query: 388 EILKGLLIAYL 398
           E+L+ L  A L
Sbjct: 372 ELLEQLFFASL 382


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 194/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 122 FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 177

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 178 GDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 231

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC+AA+  + 
Sbjct: 232 PKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLR 291

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +  +         PDFPTGG I       V  Y  G+ G  ++ R  +E++   +  +
Sbjct: 292 GEDFQLY--------PDFPTGGAID------VSKYNDGQRGGVLKVRAKIEKLDNKT--L 335

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + I   +I       + +AE ++++ L P    +  D  M+
Sbjct: 336 VIREIPFSKTTTTLIDSILKAIDKGKIKAKRVDDNTAAEVEIQVHLAP---GVSSDKTMD 392

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P  + +  +L+  +     +L      R +   RR 
Sbjct: 393 ALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLL------RKELQIRRG 445

Query: 388 EILKGLLIAYL 398
           E+L+ L  A L
Sbjct: 446 ELLEQLFFASL 456


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/129 (58%), Positives = 104/129 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 6   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 66  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 125

Query: 146 GVDEDAVDF 154
            ++++ VDF
Sbjct: 126 DLEKETVDF 134


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 231/456 (50%), Gaps = 54/456 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 104 GDASIGDALVQLGQKDL----LIDMQGNWGNILTGDRAAAPRYIEARLSKFA---LETVF 156

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC+AA++ +
Sbjct: 157 NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAISYL 216

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E ++         PDFPTGG I       V  Y  G+ G  ++ R  VE++   +  
Sbjct: 217 RGEEFNLY--------PDFPTGGSI------DVSKYNDGQRGGVLKVRAKVEKLDNKT-- 260

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLL 325
           +V+ E+P+    + L E I + +   ++ +   + D +A +V I L   P   S   D  
Sbjct: 261 LVIREVPFTKTANTLQESITKAVEKGKLKIRR-VEDMTASEVEIQLHLTPGTSS---DKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR---------------E 370
           +++++  +D E     N  V+   + P+ + +  +L+    H +               E
Sbjct: 317 IDALYAFTDCEINISPNCCVIRDNK-PEFLTVSDVLRNSAEHTKALLKLELEIRKHELEE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            LF  S  R+   DR  +  K       +IDE+++ + ++ +P      R  +T + +  
Sbjct: 376 QLFYNSLERIFIEDRIYKERK--FETAKDIDEVVSFVDSKLEPYKKTFIR-EVTRDDIIR 432

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +L ++++ + K  + +    +  + AE  +ID  L+
Sbjct: 433 LLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS 468


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 1   AYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 61  YTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 120

Query: 191 IPSH 194
           IP H
Sbjct: 121 IPPH 124


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 194/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 47  FLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 102

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 103 GDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV--FN 156

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC+AA+  + 
Sbjct: 157 PKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLR 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +  +         PDFPTGG I       V  Y  G+ G  ++ R  +E++   +  +
Sbjct: 217 GEDFQLY--------PDFPTGGAID------VSKYNDGQRGGVLKVRAKIEKLDNKT--L 260

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + I   +I       + +AE ++++ L P    +  D  M+
Sbjct: 261 VIREIPFSKTTTTLIDSILKAIDKGKIKAKRVDDNTAAEVEIQVHLAP---GVSSDKTMD 317

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P  + +  +L+  +     +L      R +   RR 
Sbjct: 318 ALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLL------RKELQIRRG 370

Query: 388 EILKGLLIAYL 398
           E+L+ L  A L
Sbjct: 371 ELLEQLFFASL 381


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 183/327 (55%), Gaps = 32/327 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E+VK   +    +E +L YA   I ERA+P + DGFKPVHRRI+H+M +  LD G 
Sbjct: 18  TAKDESVKVTGM---FQEWFLDYASYVILERAVPAIEDGFKPVHRRILHSMKD--LDDG- 71

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAY 129
            + K A IVG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA 
Sbjct: 72  RYTKVANIVGHTM-QYHPHGDASIGDAIVQIGQKDI----LIDTQGNWGNILTGDRAAAS 126

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY EAR+++ A  ++   +    +++ +Y+    EPV  P KFP +LA G  GIAVG++T
Sbjct: 127 RYIEARLSKFALEVV--FNPKTTEWQISYDGRKQEPVNLPVKFPMVLAQGAEGIAVGLST 184

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            I  HN  E+ +A++  ++           + I PDF TGGI      + V +Y  G  G
Sbjct: 185 KILPHNFIELIDASIKHLEGK--------RFTIFPDFATGGI------ADVSNYNDGLRG 230

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++R R  +E   +    +V+ EIPY    S LI+ I +    K    ++ I D ++ DV
Sbjct: 231 GKIRVRATIEVKDKN--LLVINEIPYSTNTSTLIDSILKA-NDKGKIKIKKIEDNTSSDV 287

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDME 336
            I++   N ++ PD  ++++F  ++ E
Sbjct: 288 EILVHLPN-NISPDKTIDALFAFTNCE 313


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP++ PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 205/400 (51%), Gaps = 46/400 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKIDNKT--LAITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P   S   D  +++++  +D E     N  ++   + P  + +  +LK        
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLK-------- 341

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              + +   M  + + +EI KG ++  L+   +  I   E
Sbjct: 342 ---KSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEE 378


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDALKLVMDNPDVTTRDLMEVLPG 145


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 150/482 (31%), Positives = 234/482 (48%), Gaps = 84/482 (17%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE++K VS  +  ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+       + 
Sbjct: 10  EESLKKVSGLY--KDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMRELE---DGRYN 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A +VG  + K HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GDSAAA RY 
Sbjct: 65  KVANLVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDMQGNWGNIYTGDSAAAARYI 119

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T  A  ++   +     +  +Y+  ++EP+  P KFP LLA+G  GI VG++T I 
Sbjct: 120 EARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGVEGIGVGLSTKIM 177

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+  A++A + N    +         PDF TGG++       V +Y  G  G R+
Sbjct: 178 PHNFNELINASIAHLKNKSFELY--------PDFLTGGMLD------VSNYNDGERGGRI 223

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI--AELIIAKRIPLLEDIRDESAEDVR 310
           R R  + +  + + CI  TE+P+      LI+ I  A      +I  +ED   +  E + 
Sbjct: 224 RTRARIIQKEKNTLCI--TELPFGKNTGDLIDSIIKANEKGKIKIKKIEDNTSDKVE-IN 280

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I L   N  + PD  +++++  +D E     N  V+ +G  P+ + +  IL+    H   
Sbjct: 281 IHL---NSDVSPDKTIDALYAFTDCEIPISPNACVI-VGNRPEFLTVSEILRRNTDHTVS 336

Query: 371 VLFRRSSFRMQ-----------------------------------AIDRRVEILKGLLI 395
           +L +     +                                    A+D+ ++   G L+
Sbjct: 337 LLKKELEIELHELQEKWHFASLEKIFIENEIYQEIKGKSSKEEVYTAVDKGLKPFTGNLL 396

Query: 396 AYLNIDEIIAIIRNEDKPKPVM-VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
             +  D+II +        P M +SR+    +Q  AI NL L    K+E  Q+K  LDNL
Sbjct: 397 RAVTTDDIIKLTE-----LPFMRISRY----DQDKAIENL-LALEAKIE--QVKYHLDNL 444

Query: 455 LA 456
           +A
Sbjct: 445 VA 446


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A    +DNP+++   L+E + G
Sbjct: 122 IDAVKLAMDNPDVTTRDLMEVLPG 145


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP ++   L+E + G
Sbjct: 122 IDAVKLVMDNPYVTTRDLMEVLPG 145


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 104/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYN 159
           + VDF D ++
Sbjct: 121 ETVDFVDNHD 130


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 102/125 (81%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 63  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 122

Query: 150 DAVDF 154
           + VDF
Sbjct: 123 ETVDF 127


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 205/400 (51%), Gaps = 46/400 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKIDNKT--LAITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P   S   D  +++++  +D E     N  ++   + P  + +  +LK        
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLK-------- 341

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              + +   M  + + +EI KG ++  L+   +  I   E
Sbjct: 342 ---KSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEE 378


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 196/377 (51%), Gaps = 34/377 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+    + +    E  +L YA   I +RA+P + DGFKPV RRI+H++ EM       + 
Sbjct: 21  EQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYT 132
           K+A ++G  + K HPHGD S+ D++V+L Q    +  LI  QGN+G+   GDSAAA RY 
Sbjct: 78  KAANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+++ A  +    + +  +++ +Y+  + EPV  P KFP LLA G  GIAVG+AT I 
Sbjct: 133 EGRLSKFALEV--AFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLATKIM 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ + ++ +++    +I         PDF TGG+      +   +Y  G  G ++
Sbjct: 191 PHNFNELIDGSIQVLNGERPNIL--------PDFLTGGM------ADCSAYNEGMRGGKI 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +EE  R    + +TEIP+      LIE +      K    ++ I D +AE+V I+
Sbjct: 237 RVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVV-AANDKGKIKIKKIEDNTAENVEII 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P    + PD+ +++++  +  E     N  V+   R P  M ++ +L E   + + 
Sbjct: 294 VHLAP---GISPDVTIDALYAFTACEVSISPNTCVIKNDR-PHFMSVNDVLIENTKNTKN 349

Query: 371 VLFRRSSFRMQAIDRRV 387
           +L +    ++  +  ++
Sbjct: 350 LLKQELEIKLHDLHEKI 366


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 122/181 (67%), Gaps = 1/181 (0%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYT 132
           +S R   +V GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 2   ESGRAGRDVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   V
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIV 181

Query: 253 R 253
           R
Sbjct: 182 R 182


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN  E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 188/381 (49%), Gaps = 50/381 (13%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G  + K HPH
Sbjct: 9   FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM-KYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++LV LA     +   I  QGNFGNI  GD A+A RY E R+   A+ I    +
Sbjct: 65  GDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTIF--YN 118

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI EA  A + 
Sbjct: 119 PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEKAFLS 178

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG+I       V  Y  G G   VRA+    +  R    I
Sbjct: 179 GK--------SFALFPDFPTGGLI------DVSEYEDGLGKVLVRAKLDTSDEKR----I 220

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+ E+P+      +I  I     A ++ + E I D + E V I L  P  R +    +++
Sbjct: 221 VIRELPFGSTTESMINSIEAASKAGKVKISE-ISDYTGEKVEIELKLP--RGVYSADVVD 277

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLD----------GILKEWLAHRREVLFRRSS 377
           +++  ++ E   P N+ V+      Q+   D           ILK+ L + R +L  R  
Sbjct: 278 ALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERAMLTERLH 337

Query: 378 FRM-------QAIDRRVEILK 391
            R        + I +++E +K
Sbjct: 338 LRTLERIFIEERIYKKIETMK 358


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 103/127 (81%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRD 156
           + VDF D
Sbjct: 122 ETVDFVD 128


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 196/371 (52%), Gaps = 38/371 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 60  FLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 115

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +    +
Sbjct: 116 GDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LDTVFN 169

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+CEAA+  + 
Sbjct: 170 PKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCEAAIHYL- 228

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPTGG I  SR      Y  G+ G  ++ R  +E++   S  +
Sbjct: 229 -------KGEPFRLYPDFPTGGSIDASR------YNDGQRGGSIKVRAKIEKL--DSKTL 273

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
           V+ EIP+    + LI+ I + +   +I       + +AE ++++ L P    +  D  ++
Sbjct: 274 VIREIPFSKNTTTLIDSILKAVDKGKIKAKRVDDNTAAEVEIQVHLAP---GVSSDKTID 330

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  SD E     N  V+   + P+ + +  +L      R  V       R++   R+ 
Sbjct: 331 ALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVL------RHNVDSTMGLLRLELQIRKD 383

Query: 388 EILKGLLIAYL 398
           E+L+ L  + L
Sbjct: 384 ELLEQLFFSSL 394


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 104/130 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 121

Query: 150 DAVDFRDTYN 159
           + VDF D ++
Sbjct: 122 ETVDFVDNHD 131


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 139/224 (62%), Gaps = 2/224 (0%)

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++  +L+ +++D VDF   Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+  +  L+E + GPDFPTGGI++   E I  +Y  GRG   VR
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGGIVMGKSE-IRHAYETGRGNIVVR 119

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE   G   I VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   + 
Sbjct: 120 SKTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIA 179

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
               R    ++++ ++F L+ M+T F  NM  +  G  P+++ L
Sbjct: 180 IDIRRDASAEVVLNNLFKLTLMQTSFSFNMLAIIEG-APKILSL 222


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 196/377 (51%), Gaps = 34/377 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+    + +    E  +L YA   I +RA+P + DGFKPV RRI+H++ EM       + 
Sbjct: 21  EQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYT 132
           K A ++G  + K HPHGD S+ D++V+L Q    +  LI  QGN+G+   GDSAAA RY 
Sbjct: 78  KVANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+++ A  +    + +  +++ +Y+  + EPV  P KFP LLA G  GIAVG+AT I 
Sbjct: 133 EGRLSKFALEVT--FNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLATKIM 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ + ++ +++    +I         PDF TGG+      +   +Y  G+ G ++
Sbjct: 191 PHNFNELIDGSIQVLNGERPNIL--------PDFLTGGM------ADCSAYNEGQRGGKI 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +EE  R    + +TEIP+      LIE +      K    ++ I D +AE+V I+
Sbjct: 237 RVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVV-AANDKGKIKIKKIEDNTAENVEII 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P    + PD+ +++++  +  E     N  V+   R P  M ++ +L E   + + 
Sbjct: 294 VHLAP---GISPDVTIDALYAFTACEVSISPNTCVIKNDR-PHFMSVNDVLIENTKNTKN 349

Query: 371 VLFRRSSFRMQAIDRRV 387
           +L +    ++  +  ++
Sbjct: 350 LLKQELEIKLHDLHEKI 366


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 204/400 (51%), Gaps = 46/400 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTKWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +   E  +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGEEFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKIDNKT--LAITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P   S   D  +++++  +D E     N  ++   + P  + +  +LK        
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCIIDDSK-PHFLTVSKVLK-------- 341

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              + +   M  + + +EI KG ++  L+   +  I   E
Sbjct: 342 ---KSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEE 378


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 227/458 (49%), Gaps = 67/458 (14%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           ++NPE++ ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ +   
Sbjct: 6   VNNPEVTFDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQ 64

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLL 325
            IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +  +R+V+  K R+ +   +
Sbjct: 65  AIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLK-RNAEASFI 123

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  I  L+ + + F +N  VL+  R P +M L  I+  ++  R+EVL RR+ FR++    
Sbjct: 124 LNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIITAFVDFRKEVLIRRTEFRLRKTRE 182

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------MVSR----- 420
           +  I  GL IA L+IDE+I IIR    P                       ++S      
Sbjct: 183 KAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL 242

Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   +I 
Sbjct: 243 KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIK 302

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-S 535
             ++E K  F+        R T  E S AD     + +I +E + + ++  G+I+ +K S
Sbjct: 303 NNLQETKNRFAVP------RKTSIEESDADIEA--EDLIPQEDMVITVTMNGYIKRVKLS 354

Query: 536 H-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGR 584
           H                KE D +      +T    L  S  G+ Y L    L     + R
Sbjct: 355 HYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTAR 414

Query: 585 GH----------GEAIQLLIDL----NHNQDIVTAFVY 608
           G           GE I  ++ L    + NQ+IV A  Y
Sbjct: 415 GRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAY 452


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/136 (55%), Positives = 104/136 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++ M+EMGL     +KKSAR+VGEV+GK HPHGD SVYD++VR+AQ +  RY L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD  AA RYTEARM +++E +L  +D++ VD +  +++   EP V P++ 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 173 PNLLANGTSGIAVGMA 188
           PNLL NG +GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 110/144 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++V++AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 195/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  VR R  +E+V   +  +
Sbjct: 218 NEEFKLY--------PDFQTGGNI------DVSKYNDGERGGAVRVRAKIEKVDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           V+ EIPY    + + + I +     +I +  +ED+  E+ E + + L P    +  D  +
Sbjct: 262 VIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSENVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK+ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEQK-PHFLTVSDVLKKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  + L
Sbjct: 371 NEILESLHFSSL 382


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 129/179 (72%), Gaps = 3/179 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+
Sbjct: 61  LNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
             +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+
Sbjct: 120 THIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVI 177


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/186 (46%), Positives = 132/186 (70%), Gaps = 3/186 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L L+D+ + S+E L+++I GPDFPTGGII   ++ I+E+YR GRG  ++RA+
Sbjct: 61  LNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKIRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V+ 
Sbjct: 120 THIEKKSNKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIE 178

Query: 315 PKNRSL 320
            K  ++
Sbjct: 179 LKREAM 184


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 103/129 (79%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137

Query: 146 GVDEDAVDF 154
            +++D +DF
Sbjct: 138 DINKDTIDF 146


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 181/337 (53%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 6   FLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 62  GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 116 PKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLR 175

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  V+ R  + +V   +  +
Sbjct: 176 NEEFKLY--------PDFQTGGSI------DVSKYNDGERGGAVKIRSKINKVDNKT--L 219

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    + +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 220 AITEIPYGRTTTSVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 275

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 276 DALYAFTDCEVSISPNCCVID-DQKPHFLTISHVLKK 311


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 186/337 (55%), Gaps = 33/337 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M E  LD G  + K A I+G  + K HPH
Sbjct: 87  FLDYASYVILERAVPYVNDGLKPVQRRILHSMRE--LDDGR-YNKVANIIGNTM-KYHPH 142

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 143 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVV--FN 196

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+A+ I  HN  E+ +A +A + 
Sbjct: 197 PKTTNWKPSYDGRNREPITLPIKFPLLLAQGVEGIAVGLASKILPHNFNELIDACIAHL- 255

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K  ++++ PDFPTGG+I       V  Y  G  G  V+ R  +E+    +  +
Sbjct: 256 -------KHEDFVLYPDFPTGGMID------VSKYCDGMRGGNVKIRAKIEK-DNNNRAL 301

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIP+    S LI+ I +    K    ++ I D +A DV I+  L P    +  D  +
Sbjct: 302 KITEIPFGRTTSSLIDSIIKA-NEKGKIKIKKIDDNTARDVEILIQLAP---GVSSDKTI 357

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P+ MP+  IL++
Sbjct: 358 DALYAFTDCELSISPNSCVIEEEK-PRFMPISDILRQ 393


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 190/346 (54%), Gaps = 34/346 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M +  LD G  + K A IVG  + + HPH
Sbjct: 29  FLDYASYVILERAVPAIEDGLKPVQRRILHSMKD--LDDGR-YNKVANIVGHTM-QYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA-ELILQGV 147
           GD S+ D++V++ Q    +  LI  QGN+GNI  GDSAAA RY EAR+++ A E++    
Sbjct: 85  GDASIADAMVQVGQ----KELLIDMQGNWGNILTGDSAAASRYIEARLSKFALEVVFS-- 138

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
                D++ +Y+    EP+  P KFP LLA G  GIAVG++T I  HN  E+ +A++  +
Sbjct: 139 -PKVTDWQLSYDGRKKEPIHLPVKFPLLLAQGAEGIAVGLSTKILPHNFNELLQASIQHL 197

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              +I +         PDF TGG+I       V++Y  G  G +VR R  + +  + +  
Sbjct: 198 KGKKIDVY--------PDFQTGGVID------VQNYNEGLRGGKVRVRAKITQQDKNT-- 241

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+ EIP+    S LI+ I +    K    ++ I D +A +V I++   N  + PD +++
Sbjct: 242 LVINEIPFSTNTSSLIDSILK-ANEKGKIKIKKIEDNTASEVEILVHLPN-DISPDKMID 299

Query: 328 SIFMLSDMETRF-PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +++  +  ET   PL    L +   P  M ++ +LK    H  ++L
Sbjct: 300 ALYAFTACETSISPL--GCLIIDNKPHFMGVNEMLKISTDHTVQLL 343


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 203/388 (52%), Gaps = 41/388 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A++  +   E  +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASINYLRGEEFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKLDNKT--LAITEIPYGKTTSSVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             L P   S   D  +++++  +D E     N  V+   + P  + +  +LK+   +  +
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKKSADNTLD 349

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +L      + +   ++ EIL+ L  A L
Sbjct: 350 LL------KQELEIKKGEILEALHFASL 371


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 188/353 (53%), Gaps = 35/353 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +      +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGESFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKLDNKT--LAITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             L P   S   D  +++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKK 342


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 239/433 (55%), Gaps = 24/433 (5%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           + ++++L+E I GPDFPTGG I +  E I ++Y  G+G   +R +  VE++  G   IV+
Sbjct: 1   DCTVDELMEVIKGPDFPTGGTI-QGAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVI 59

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESI 329
           TEIP++V K+ L++KI EL + +++  + ++RDE+    +RIV+  K +  D   ++  +
Sbjct: 60  TEIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELK-KDADAAGVLNYL 118

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  +D++  +  NM  +S  R P+++ L  +L  ++ H++EV+ RRS + ++    R  I
Sbjct: 119 YKNTDLQIPYNFNMVAIS-NRHPKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHI 177

Query: 390 LKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           ++GL+ A   +DE+IA IR ++DK   K  ++S+F  TE Q +AI++L+L  L   +   
Sbjct: 178 VEGLMKALSILDEVIAAIRASKDKRDAKDNLISQFGFTEPQAEAIVSLQLYRLTNTDITA 237

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +++E + L  +  ++ S+L S K+  + I  ++++VK+ F+ +     RR+         
Sbjct: 238 LRAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVKKRFADA-----RRSVIEAEIEEI 292

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTDRI 563
           K  L + +I  E + V ++N G+++     S   S       K+ D L   L  +TTD +
Sbjct: 293 KINL-EVLIASEDVIVTVTNEGYVKRTSQRSFAASNGQDFGMKDSDRLMSKLDMNTTDVL 351

Query: 564 LLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L+ +  G    LP   L  +  +  G+ +  L+ ++  + I+ A     +++   L+ ++
Sbjct: 352 LVFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRTESIIGAIPVKDFEAEAYLMFIT 411

Query: 619 SKGNAFIVEESEI 631
             G   +V++SE+
Sbjct: 412 KNG---MVKKSEL 421


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 181/337 (53%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 37  FLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 93  GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 146

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 147 PKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLR 206

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  V+ R  + +V   +  +
Sbjct: 207 NEEFKLY--------PDFQTGGSID------VSKYNDGERGGAVKIRSKINKVDNKT--L 250

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    + +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 251 AITEIPYGRTTTSVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 306

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +L++
Sbjct: 307 DALYAFTDCEVSISPNCCVID-DQKPHFLTISHVLRK 342


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 111/156 (71%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
           T+  RA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 3   TLFRRALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 62

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F  
Sbjct: 63  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAW 122

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            +++ + EP V P+ FPNLL NG +GI+ G AT+IP
Sbjct: 123 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATAIP 158


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 199/390 (51%), Gaps = 42/390 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RR+++ M  M         K A+IVG  +   HPH
Sbjct: 56  FLDYASYVILERAVPHIEDGLKPVQRRVLYTMHLME---NGTLHKVAKIVGATMA-YHPH 111

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EA+++  A  IL G  
Sbjct: 112 GDASINDALVQLGQ----KGYLIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEILFG-- 165

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A + 
Sbjct: 166 DKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACAHLR 225

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
               ++         PDFPTGGII       V+ Y  G+ G +V++R  +E +      +
Sbjct: 226 GEPFTLY--------PDFPTGGIID------VDRYNDGKRGGQVKSRARIERI--EDRVL 269

Query: 269 VVTEIPYQVQKSRLIEKIAE-----LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            V ++P+    S LI+ I +     LI  KRI   +D+  E+A D+RI L P   S D  
Sbjct: 270 SVRDLPFGKTTSTLIDSILKANDKGLIKIKRI---DDMTAETA-DIRIYL-PVGVSADK- 323

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             ++ ++  +D E     N  V+   + P+ + +  +L+  + H R +L      R+Q  
Sbjct: 324 -TIDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVEHTRGLL--EEDLRLQLH 379

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           DR+ E +   L        I  +   ED P
Sbjct: 380 DRQEEYMGASLERLFIEHRIYKLPAFEDAP 409


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 189/347 (54%), Gaps = 36/347 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+PD+ DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 57  FLDYASYVILERAVPDIYDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 112

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 113 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 165

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I  HN  E+ +A +A +
Sbjct: 166 NPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKILPHNFNELLDACVANL 225

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   K  ++I+ PDF TGG I  SR      Y  G  G  V+ R  + ++   +  
Sbjct: 226 --------KGEDFILYPDFQTGGSIDVSR------YNDGERGGAVKIRAKIGKIDNKT-- 269

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           + +TEIP+    S+LIE I +     +I + + + D ++ +V I+  L P + S   D  
Sbjct: 270 LAITEIPFGTNTSKLIESIIKASDKGKIKIRK-VDDNTSANVEILVHLLPGSSS---DKT 325

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +++++  +D E     N  V+   + P+   +  +L+    H  ++L
Sbjct: 326 IDALYAFTDCELSISPNCCVIHDNK-PRFCGVSEMLRISCQHTMDLL 371


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/124 (59%), Positives = 99/124 (79%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 196 VQEI 199
           + E+
Sbjct: 121 LTEV 124


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 181/337 (53%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 6   FLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 62  GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 116 PKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLR 175

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  V+ R  + +V   +  +
Sbjct: 176 NEEFKLY--------PDFQTGGSI------DVSKYNDGERGGAVKIRSKINKVDNKT--L 219

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    + +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 220 AITEIPYGRTTTSVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 275

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +L++
Sbjct: 276 DALYAFTDCEVSISPNCCVID-DQKPHFLTISHVLRK 311


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/155 (47%), Positives = 111/155 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 5   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 64

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 65  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 124

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +++ + EP V P+ FPNLL NG +GI+ G AT IP
Sbjct: 125 FDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIP 159


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 109/144 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D  +  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYIIG 223
            +A   ++DNP+++   L+E + G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|332829303|gb|EGK01957.1| hypothetical protein HMPREF9455_00079 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 908

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 30/344 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A I+G  + + HPH
Sbjct: 55  FLDYASYVILERAVPHITDGLKPVQRRIMHSMKRMD---DGRYNKVANIIGHTM-QFHPH 110

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GN+  GD AAA RY EAR+++ A  +L   +
Sbjct: 111 GDASIGDALVQLGQKDL----LVDCQGNWGNVFTGDGAAAPRYIEARLSKFALEVL--FN 164

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+AA+A + 
Sbjct: 165 PKTTEWKPSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELCDAAVAHLQ 224

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ + PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 225 GE--------EFTLYPDFQTGGYID------VSKYNDGERGGSVKVRAKISKLDNKT--L 268

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+++IPY    S ++E I +     +I + + + D +A++V I +      +  D  +++
Sbjct: 269 VISDIPYGRTSSSVVESILKANDKGKIKIRK-VDDITAQNVEIHVHLA-AGVSSDKTIDA 326

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++  +D E     N  V+   + P  + +  IL++   + R +L
Sbjct: 327 LYAFTDCEISISPNCCVIEDNK-PYFLTVSRILRDTTENTRRLL 369


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 188/353 (53%), Gaps = 35/353 (9%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  + + HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +      +         PDF TGG I       V  Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGESFQLY--------PDFQTGGSID------VAKYNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++   +  + +TEIPY    S +I+ I + +   +I + + + D +A +V I+
Sbjct: 237 KVRAKINKLDNKT--LAITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEIL 293

Query: 313 --LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             L P   S   D  +++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 294 VHLAPGTSS---DKTIDALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKK 342


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 182/337 (54%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 37  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 93  GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 146

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 147 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLR 206

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 207 GEEFQLY--------PDFQTGGSI------DVAKYNDGERGGAVKVRAKITKIDNKT--L 250

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    S +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 251 AITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DRTI 306

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 307 DALYAFTDCEVSISPNCCVIDDSK-PHFLTISKVLKK 342


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 138/195 (70%), Gaps = 4/195 (2%)

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++
Sbjct: 1   TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 60

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+ 
Sbjct: 61  NELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKT 119

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+  
Sbjct: 120 HIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIEL 178

Query: 316 KNRSLDPDLLMESIF 330
           K  ++  ++++ ++F
Sbjct: 179 KRDAMS-EIVLNNLF 192


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 197/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 37  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 93  GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 146

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 147 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 206

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 207 GEEFQLY--------PDFQTGGSID------VAKYNDGERGGAVKVRAKINKIDNKT--L 250

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    S +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 251 AITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 306

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++   +  ++L      + +   ++
Sbjct: 307 DALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLRKSADNTLDLL------KQELEIKK 359

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 360 NEILEALHFASL 371


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 175/310 (56%), Gaps = 31/310 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+HA+ E  LD G  + K A +VG  + + HPH
Sbjct: 39  FLDYASYVILERAVPAIEDGFKPVQRRIMHALKE--LDDGR-YNKVANVVGHTM-QYHPH 94

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA-ELILQGV 147
           GD S+ D++V++ Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A E++    
Sbjct: 95  GDASIADAMVQIGQKDL----LIDTQGNWGNILTGDSAAASRYIEARLSKFALEVVFS-- 148

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
                 ++ +Y+    EP   P KFP LLA G  GIAVG++T +  HN  E+ ++++  +
Sbjct: 149 -PKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFIELIDSSIKHL 207

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   K  ++ I PDFPT GII       V +Y  G  G ++R R  + ++ + +  
Sbjct: 208 --------KGQKFTIFPDFPTSGIID------VSNYNDGIRGGKIRVRAKISQLDKST-- 251

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+ EIPY    S LI+ I +     +I + + I D +A DV I++   +  L PD  ++
Sbjct: 252 LVINEIPYGTNTSSLIDSILKANEKGKIRVRK-IEDNTAADVEILIHLPS-GLSPDKTID 309

Query: 328 SIFMLSDMET 337
           +++  +  E+
Sbjct: 310 ALYAFTACES 319


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 197/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 37  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 93  GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 146

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 147 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 206

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 207 GEEFQLY--------PDFQTGGSID------VAKYNDGERGGAVKVRAKINKIDNKT--L 250

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    S +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 251 AITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 306

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++   +  ++L      + +   ++
Sbjct: 307 DALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLRKSADNTLDLL------KQELEIKK 359

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 360 NEILEALHFASL 371


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 194/365 (53%), Gaps = 36/365 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++G  + K 
Sbjct: 25  ENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVIGNTM-KY 80

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA-ELIL 144
           HPHGD S+ D++V++ Q  +    LI  QGN+G+ I GD+AAA RY EAR+++ A E++ 
Sbjct: 81  HPHGDASIGDAMVQIGQKDL----LIDCQGNWGDPITGDNAAAPRYIEARLSKFANEVVF 136

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            G   D   ++ +Y+  ++EPV  P KFP LLA G  GIAVG+AT +  HN  E+ +A++
Sbjct: 137 NG---DTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIELLDASI 193

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             +     +I         PDF TGG+      +   +Y  G  G R+R R  + E  + 
Sbjct: 194 EALQGHRPNIL--------PDFFTGGM------ADFSAYNEGMRGGRIRVRAKITE--KD 237

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDP 322
              +V+TEIPY      +I+ I       +I  ++ I D +A  V IV  L P    + P
Sbjct: 238 KKTLVITEIPYSTTTGSVIDSILSANDKGKI-KIKKIEDNTAAHVEIVIQLAP---GISP 293

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+ +++++  +  E     N  ++   + PQ + ++ IL E   H + +L +    ++  
Sbjct: 294 DVTIDALYAFTSCEVSISPNTCIIKDEK-PQFLSVNDILIENSMHTKALLKKELEIKLHE 352

Query: 383 IDRRV 387
           +  ++
Sbjct: 353 LQEKI 357


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 138/195 (70%), Gaps = 4/195 (2%)

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++
Sbjct: 1   TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 60

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+ 
Sbjct: 61  NELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKT 119

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315
            +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+  
Sbjct: 120 HIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIEL 178

Query: 316 KNRSLDPDLLMESIF 330
           K  ++  ++++ ++F
Sbjct: 179 KRDAMS-EIVLNNLF 192


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 188/355 (52%), Gaps = 39/355 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ + PDF TGG I       V  Y  G  G  VR R  +E+V   +  +
Sbjct: 218 KE--------EFKLYPDFQTGGNI------DVSKYNDGERGGAVRVRAKIEKVDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           V+ EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 VIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRS 376
           ++++  +D E     N  V+   + P  + +  +LK+ + +     RRE+  RR+
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEQK-PHFLTVSDVLKKSVDNTLALLRRELEIRRN 371


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 29/309 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  + K A IVG  + + HPH
Sbjct: 34  FLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD--LDDGR-YNKVANIVGHTM-QYHPH 89

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++    
Sbjct: 90  GDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIEARLSKFALDVVYS-- 143

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+   +EPV  P KFP LLA G  GIAVG++T I  HN  E+ +A++  + 
Sbjct: 144 PKITDWQLSYDGRKNEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDASIKHLQ 203

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                I         PDFPT GI+       V +Y  G  G +VR R  + ++ + +  +
Sbjct: 204 GKRFQIY--------PDFPTSGIMD------VSNYNDGLRGGKVRVRAKISQLDKNT--L 247

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+TEIP+    + LIE I +    K    ++ I D +A DV I++   N ++ PD  +++
Sbjct: 248 VITEIPFGTNTTSLIESILKA-NDKGKIKIKKIEDNTAADVEILVHLPN-NISPDKTIDA 305

Query: 329 IFMLSDMET 337
           ++  ++ E+
Sbjct: 306 LYAFTNCES 314


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 135/213 (63%), Gaps = 1/213 (0%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA M++++  IL+ + +D +D++DTY   + +PVV PS+FPNLL  G +G A GMA 
Sbjct: 2   RYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMAP 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + +I +  LA  +NP  +I +L+E+I GPDFPT G I      I ++Y  GRG 
Sbjct: 62  NIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIF-GPSGIRKAYETGRGS 120

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +++   G   IVVTEIPYQV K+ LIEKIA+L+  K+I  + D+RDES    
Sbjct: 121 ITIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRTG 180

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
             ++    R  + ++++ +++  + ++  F +N
Sbjct: 181 MRIVIEIRRDANANVILNNLYKQTALQASFGIN 213


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 197/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 37  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 92

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 93  GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 146

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 147 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLR 206

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 207 GEEFQLY--------PDFQTGGSID------VAKYNDGERGGAVKVRAKINKIDNKT--L 250

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    S +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 251 AITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 306

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++   +  ++L      + +   ++
Sbjct: 307 DALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLRKSADNTLDLL------KQELEIKK 359

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 360 NEILEALHFASL 371


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 128/195 (65%), Gaps = 1/195 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + +PVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP I I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I
Sbjct: 61  NPGIPIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 120 IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 179

Query: 329 IFMLSDMETRFPLNM 343
           ++  + ++T F +N+
Sbjct: 180 LYKQTALQTSFGINL 194


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/482 (30%), Positives = 243/482 (50%), Gaps = 60/482 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K VS  +  ++ +L YA   I +RAIP + DG KPV RRI+H+M E+       + K
Sbjct: 11  ESLKKVSGLY--KDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSMRELE---DGRYNK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A IVG  + K HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GDSAAA RY E
Sbjct: 66  VANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNIYTGDSAAAARYIE 120

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  ++   +    ++  +Y+  ++EP+  P KFP LLA G  GI VG++T I  
Sbjct: 121 ARLTPFALEVV--FNPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLSTKILP 178

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+  A++A +        K  ++ + PDF T G +       V  Y  G  G +VR
Sbjct: 179 HNFNELINASVAYL--------KGKKFELYPDFLTAGYLD------VSEYNDGHRGGKVR 224

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  + +  + +  +V++E+PY    + LI+ I +    K    ++ I D +++ V I++
Sbjct: 225 ARAKITQTDKHT--LVISELPYSKTTTDLIDSILKA-NEKGKIKIKKIEDNTSDKVEILI 281

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              N  + PD  +++++  +D +     N  V+ +G  P  M +  ILK    H   +L 
Sbjct: 282 HIHN-DVSPDKTIDALYAFTDCQVTISPNACVI-VGDKPMFMNVSEILKMNTDHTVSLLK 339

Query: 374 RRSSFRMQAIDRRVEI--LKGLLIA---YLNIDEIIA---IIRNED---KPKPVMVSRFS 422
           +     +  +        L+ + I    Y +I+E+     +++  D   KP    + R +
Sbjct: 340 KELEIELHELQESWHFSSLERIFIENRIYHDIEEVKTWEDVLKTIDAGLKPHTKHLLR-A 398

Query: 423 LTENQVDAILNLRLR-----SLRKLEEY---------QIKSELDNLLAEKEKIDSLLNSG 468
           +TE  +  +  +R++      L K +E          Q+K  L+NL+A    ID  LN  
Sbjct: 399 VTEEDILKLTEIRIKRISRFDLDKFKENIASLEGKIEQVKYNLENLIA--YAIDYYLNIQ 456

Query: 469 KQ 470
           K+
Sbjct: 457 KK 458


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 231/461 (50%), Gaps = 60/461 (13%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIPD+ DG KPV RRI+H++ EM       F K A +VG  + K HPH
Sbjct: 12  FLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGYCM-KYHPH 67

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++L  LA   +     I  QGNFGN+  GD A+A RY E R+T+ A+ IL   +
Sbjct: 68  GDASIGNALTVLANKSL----FIDKQGNFGNLFTGDEASAPRYIECRITEFAKDIL--FN 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                +  +Y+  + EPVVF +K P +L  G  GIAVGM+T I  HN++EI EA    + 
Sbjct: 122 PHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREIIEAEKDCLS 181

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDF TGG+I       V  Y+ G+G   VRA+    +  R    I
Sbjct: 182 GK--------SFTLYPDFQTGGLI------DVSEYQDGKGKVLVRAKLDTSDDKR----I 223

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+ E+P+      LI  I     + ++ + E I D +AE V I L  P  R +    +++
Sbjct: 224 VIRELPFGSTTESLIASIESASKSGKVKISE-INDYTAEQVEIELKLP--RGVYASDVVD 280

Query: 328 SIFMLSDMETRFPLNM-----NVLSMGRVPQVMP-----LDGILKEWLAHRREVLFRRSS 377
           +++  +D E     N+     N+     V +V+      L  +LK+ L + +E+L  R  
Sbjct: 281 ALYAFTDCEQSISCNLLVIQDNLPVQTSVTEVIKTHAKQLTALLKDELMYEQEMLTDRLH 340

Query: 378 FRM-------QAIDRRVEILKGLLIAYLNIDEII-AIIRNEDKPKPVMVSRFSLTENQVD 429
            R        + I +++E +K         + +I A+I+  +  K  ++    +TE  VD
Sbjct: 341 LRTLERIFIEERIYKKIETMK-------TAESVIKAVIKGFEPFKAELIR--EVTEEDVD 391

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +L + +R +   +  + ++E+  + A  ++I  LL + K+
Sbjct: 392 RLLKIPIRRISLYDIQKNRAEVQEISARLKEIARLLKNLKK 432


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 194/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  VR R  +E+V   +  +
Sbjct: 218 NEEFKLY--------PDFQTGGNI------DVSKYNDGERGGAVRVRAKIEKVDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           V+ EIPY    + + + I +     +I +  +ED+   + E + + L P    +  D  +
Sbjct: 262 VIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGNVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK+ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEQK-PHFLTVSDVLKKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  + L
Sbjct: 371 NEILESLHFSSL 382


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A  +LQ +D++ V F   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 113/159 (71%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
            +S   +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S
Sbjct: 1   GISNHSDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V 
Sbjct: 61  IYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVP 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           F   +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 FAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATEIP 159


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 141/202 (69%), Gaps = 4/202 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   VTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LIDN   S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+
Sbjct: 61  LNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVKVRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  E +R+V+ 
Sbjct: 120 THIEK-RVNKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIE 178

Query: 315 PKNRSLDPDLLMESIFMLSDME 336
            K  ++  ++++ ++F  + ME
Sbjct: 179 LKRDAMS-EIVLNNLFKSTTME 199


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 137/193 (70%), Gaps = 4/193 (2%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 1   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 60

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +
Sbjct: 61  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKTHI 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
           E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+  K 
Sbjct: 120 EKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 178

Query: 318 RSLDPDLLMESIF 330
            ++  ++++ ++F
Sbjct: 179 DAMS-EIVLNNLF 190


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 187/332 (56%), Gaps = 31/332 (9%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+++  EE +  V+  +  +E +L YA   I ERA+P L DG KPV RRI+H+M +  L
Sbjct: 19  SNTDSPQEETITKVTGMY--KEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKD--L 74

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
           D G  + K A IVG  + + HPHGD S+ D++V++     Q+  LI  QGN+GNI  GD 
Sbjct: 75  DDG-RYNKVANIVGHTM-QYHPHGDASIADAMVQIG----QKELLIDMQGNWGNILTGDR 128

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P KFP LLA G  GIAV
Sbjct: 129 AAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGAEGIAV 186

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T I  HN  E+ +A++  +        K   + + PDF TGGI      +   +Y  
Sbjct: 187 GLSTKILPHNFNELIDASIKYL--------KGRSFKLVPDFLTGGI------ADFTNYND 232

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+ G +VR R  + ++ + +  +V+TEIP+    S LI+ I +     +I + +   + +
Sbjct: 233 GKRGGKVRIRAKISQLDKKT--LVITEIPFSTTTSSLIDSILKANDKGKIKIKKIEDNTA 290

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
           AE   +V  P N S  PD  +++++  ++ ET
Sbjct: 291 AEVEILVHLPPNVS--PDKSIDALYAFTNCET 320


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 194/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ + PDF TGG I       V  Y  G  G  VR R  +E+V   +  +
Sbjct: 218 KE--------EFKLYPDFQTGGNI------DVSKYNDGERGGAVRVRAKIEKVDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           V+ EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 VIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK+ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEQK-PHFLTVSAVLKKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  + L
Sbjct: 371 NEILESLHFSSL 382


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++A+ +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 167/270 (61%), Gaps = 15/270 (5%)

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 1   AVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 59

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +
Sbjct: 60  KERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHV 119

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F +NM  L  G  P+V+ L   L  +L H++ V+ RR+++ ++  +
Sbjct: 120 ILNNLYKQTALQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAE 178

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  
Sbjct: 179 ARAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTG 238

Query: 442 L------EEYQ----IKSELDNLLAEKEKI 461
           L      EEYQ    + +EL  +LA +EK+
Sbjct: 239 LEREKIEEEYQSLIKLIAELKEILANEEKV 268


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 34/337 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 6   FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  I+   +
Sbjct: 62  GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIV--FN 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 116 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 175

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDF TGG I       V  Y  G  G  V+ R  + ++   +  +
Sbjct: 176 GESFQLY--------PDFQTGGSID------VAKYNDGERGGAVKVRAKINKLDNKT--L 219

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
            +TEIPY    S +I+ I + +   +I + + + D +A +V I+  L P   S   D  +
Sbjct: 220 AITEIPYGKTTSTVIDSILKAVDKGKIKIRK-VDDNTAANVEILVHLAPGTSS---DKTI 275

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++++  +D E     N  V+   + P  + +  +LK+
Sbjct: 276 DALYAFTDCEVSISPNCCVIDDSK-PHFLTVSKVLKK 311


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 197/372 (52%), Gaps = 39/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P   DG KPV RRI+HAM    LD G  + K A +VG  + + HPH
Sbjct: 40  FLDYASYVILERAVPHSDDGLKPVQRRILHAMKR--LDDGR-YNKVANVVGHTM-QFHPH 95

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 96  GDASIGDALVQLGQKNL----LIDTQGNWGNILTGDDAAAPRYIEARLSKFALDVV--FN 149

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+  + EP+  P KFP LLA G  GIAVG++  I  HN  E+C+AA+  + 
Sbjct: 150 PKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGELCQAAIQYL- 208

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  +   + I PDF TGG I       V +Y+ GR G  V+ R  + ++      +
Sbjct: 209 -------RGEAFTIYPDFQTGGSI------DVSNYKEGRRGGSVKVRAKISKLDNNK-TL 254

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
           V+TEIP+      +I+ I       +I + + + D +A +V I+  L P   S   D  +
Sbjct: 255 VITEIPFGTTTQSIIDSILRANEKGKIKVRK-VDDNTAAEVEILVHLAPGTSS---DKAI 310

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V++  + P+ + ++ +L++ +     +L  RS   +    RR
Sbjct: 311 DALYAFTDCEVSISPNCVVIT-DKKPRFLSVNEVLQQSVDRTMSLL--RSELEI----RR 363

Query: 387 VEILKGLLIAYL 398
            E+L+ L  A L
Sbjct: 364 HELLESLHYASL 375


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 187/354 (52%), Gaps = 34/354 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI++AM    L       K A+IVG+ +   HPH
Sbjct: 56  FLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLHKVAKIVGQTMA-FHPH 111

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q       LI  QGN+GN + GD AAA RY EA+++ +A  +L   D
Sbjct: 112 GDASINDALVQLGQKGF----LIDTQGNWGNTLTGDEAAAGRYIEAKLSSLALEVL--FD 165

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ TY+    EPV  P +FP LLA G  GIAVG+++ I  HN +E+ EAA+A + 
Sbjct: 166 SKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKELLEAAIAYLR 225

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDFPTGG++       V+ Y  G  G  ++ R  +E++      +
Sbjct: 226 GESFELY--------PDFPTGGLL------DVDKYNDGHRGGALKCRAKIEKI--DDRVL 269

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            +TE+P+    + LIE I +     +I +  ++D+   +A D+RI L P   S D    +
Sbjct: 270 SITELPFGKTTTSLIESILKANEKGKIKIKHIDDMTAATA-DIRIQL-PAGVSTDK--TI 325

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++  +D E     N  V+  G  P  + +  +LK      +E+L  + ++R+
Sbjct: 326 DGLYAFTDCEVGLSPNACVIKEG-TPVFLGVSDLLKYSADRTKELLVAQLNYRL 378


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  +R R  +E++   +  +
Sbjct: 218 NEEFKLY--------PDFQTGGSID------VSKYNDGERGGAIRVRSKIEKIDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            + EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 AIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVID-DQKPHFLTVSDVLRKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 371 GEILESLHFASL 382


>gi|332664590|ref|YP_004447378.1| DNA topoisomerase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333404|gb|AEE50505.1| DNA topoisomerase (ATP-hydrolyzing) [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 872

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 194/370 (52%), Gaps = 34/370 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S T    N K + L+   ++ +L YA   I ERA+P + DG KPV RRI+HAM E  
Sbjct: 1   MDKSTTQNNGNPKLIHLQGMYQDYFLDYASYVILERAVPHIDDGLKPVQRRILHAMKETD 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 + K A ++G  + + HPHGD ++ D+LV + Q  +    +I  QGN+G++  G 
Sbjct: 61  ---DGRYNKVANVIGLTM-QYHPHGDAAIGDALVNMGQKDL----MIDTQGNWGDVATGA 112

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RY E R+T+ +  +L   +    +++ +Y+    EPV  P+KFP LLA GT GIA
Sbjct: 113 GAAAPRYIEGRLTKFSLEVL--FNPQTTEWQMSYDGRKREPVTLPAKFPLLLAAGTDGIA 170

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T I  HN  E+ +A++ ++ + ++         I PDF TG ++       V  Y 
Sbjct: 171 VGLSTKIMPHNFIELIKASIDILKDKKVQ--------IFPDFQTGAMV------DVSDYN 216

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI--AELIIAKRIPLLEDIR 302
            G+ G R++ R  +E++ +    + + E+PY V    LIE I  A      +I  + D+ 
Sbjct: 217 GGKRGGRIKIRALIEKLDKD--LLAIKELPYGVTTESLIESIIKASEKGKIKIKKVVDLT 274

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            +  E V++ L P      PD+ +++++  +D E     N  V+   + P+ M ++ IL+
Sbjct: 275 SKDVE-VQVELLP---GTSPDVTIDALYAFTDCEVSISPNACVIHNDK-PRFMTVEEILE 329

Query: 363 EWLAHRREVL 372
                 R++L
Sbjct: 330 HNTFRTRDLL 339


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/143 (52%), Positives = 106/143 (74%), Gaps = 1/143 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RYPL+ GQGN+G  D   S AA RYTE+R+ ++A+++L  + +  VD++  ++    EP 
Sbjct: 61  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQ 120

Query: 167 VFPSKFPNLLANGTSGIAVGMAT 189
             P++ P++L NGT+GIAVGMAT
Sbjct: 121 YLPARLPHILLNGTTGIAVGMAT 143


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  +R R  +E++   +  +
Sbjct: 218 NEEFKLY--------PDFQTGGSID------VSKYNDGERGGAIRVRSKIEKIDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            + EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 AIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVID-DQKPHFLTVSDVLRKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 371 GEILESLHFASL 382


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 196/384 (51%), Gaps = 45/384 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P L DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 39  FLDYASYVILERAVPHLGDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPH 94

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  G SAAA RY EAR+++ A  +    +
Sbjct: 95  GDASIGDALVQLGQKDL----LIDTQGNWGNILTGSSAAAPRYIEARLSKFA--LDTVFN 148

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  EIC+AA++ + 
Sbjct: 149 PKTTEWKMSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFCEICDAAISYLH 208

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
               ++         PDFPT G I       V  Y  G+ G  ++ R  +E++ + +  +
Sbjct: 209 QQPFALY--------PDFPTSGSI------DVSKYNDGQRGGVIKVRAKIEKIDQKT--L 252

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
           V+ EIP+      L + I + I   +I    +ED+     E +++ L P    +  D  +
Sbjct: 253 VIREIPFSKTSETLQDSIVKAIEKGKIKARKVEDLTAAEVE-IQVHLAP---GVSSDKTI 308

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + PQ + +  +L+  +   +++           I + 
Sbjct: 309 DALYAFTDCEVSISPNCCVIEDNK-PQFLTVSDVLRHSVERTKDL-----------IRQE 356

Query: 387 VEILKGLLIAYLNIDEIIAIIRNE 410
           +EI KG L+  L+   +  I   E
Sbjct: 357 LEIRKGELLEQLHFQSLERIFIEE 380


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++ + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N E  +         PDF TGG I       V  Y  G  G  +R R  +E++   +  +
Sbjct: 218 NEEFKLY--------PDFQTGGSID------VSKYNDGERGGAIRVRSKIEKIDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            + EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 AIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++ + +   +L      R +   R+
Sbjct: 318 DALYAFTDCEVSISPNCCVID-DQKPHFLTVSDVLRKSVDNTLALL------RQELEIRK 370

Query: 387 VEILKGLLIAYL 398
            EIL+ L  A L
Sbjct: 371 GEILESLHFASL 382


>gi|332879118|ref|ZP_08446819.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682918|gb|EGJ55814.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 866

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 193/368 (52%), Gaps = 52/368 (14%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + 
Sbjct: 25  QDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGNTM-QY 80

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q    +  LI  QGN+GN + G  AAA RY EAR+++ A  ++ 
Sbjct: 81  HPHGDASIGDAIVQIGQ----KELLIDTQGNWGNTLTGADAAAPRYIEARLSKFALDVV- 135

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EP+  P KFP LLA GT GIAVG++T I  HN  E+ +A++A
Sbjct: 136 -FSPKVTEWQSSYDGRKREPISLPVKFPLLLAQGTEGIAVGLSTKILPHNFIELIDASVA 194

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +      +         PDFPT GI+       V  Y  G  G RVR R  + ++ + +
Sbjct: 195 YLQGKPFELY--------PDFPTAGIMD------VSGYNDGARGGRVRVRAKISQLDKST 240

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V+ EIP+      LI+ I +      I  ++ + D +A DV I++   N S  PD  
Sbjct: 241 --LVINEIPFTTTTKTLIDSILKANDKGNIK-IKKVDDNTAADVEILVHLPNGS-SPDKT 296

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV--LFRRSSFRMQAI 383
           +++++  +  ET                + P+  ++++   H   V  + RRS+      
Sbjct: 297 IDALYAFTACET---------------AISPITCVIEDNKPHFLTVSEVLRRST------ 335

Query: 384 DRRVEILK 391
           DR V+ILK
Sbjct: 336 DRTVDILK 343


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 113/159 (71%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S   +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+
Sbjct: 2   ISNYSDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSI 61

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F
Sbjct: 62  YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF 121

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
              +++ + EP V P+ F NLL NG++GI+ G AT IPS
Sbjct: 122 AWNFDDTEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 189/348 (54%), Gaps = 34/348 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  + K A IVG  + + HPH
Sbjct: 31  FLDYASYVILERAVPAMEDGFKPVQRRIMHSMKD--LDDGR-YNKVANIVGHTM-QYHPH 86

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +L   +
Sbjct: 87  GDASIGDAMVQIGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFALEVL--YN 140

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EPV  P KFP LLA G  GIAVG++T +  HN  E+ +A++  + 
Sbjct: 141 PKLTEWQLSYDGRKKEPVNLPVKFPMLLAQGGEGIAVGLSTRLLPHNFNELIDASIKHLQ 200

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGGI      + +  Y  G+ G RVR R  + ++ + +  +
Sbjct: 201 GK--------RFKLFPDFPTGGI------ADISHYNDGKRGGRVRVRAKISQLDKNT--L 244

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLME 327
           V+TEIP+    + LI+ + +    K    ++ I D +A +V I +  P N  + PD  ++
Sbjct: 245 VITEIPFGTTTTSLIDSVLKA-NEKGKIKIKKIEDNTAAEVEIQIHLPNN--ISPDRTID 301

Query: 328 SIFMLSDMETRF-PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           +++  +  E    PL   ++     P+ + +  IL+    H   +L R
Sbjct: 302 ALYAFTQCENSLSPLGCVIVD--NKPEFLGVSDILRSSTDHTLHLLKR 347


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 102/127 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 4   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 64  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 123

Query: 146 GVDEDAV 152
            ++++ V
Sbjct: 124 DLEKETV 130


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 178/356 (50%), Gaps = 38/356 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A  L   +   ++ YA   IK+RAIPD+ DG KPV RRI+H +     D G  F K A I
Sbjct: 30  ATHLNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTL--FKADDGK-FHKVANI 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           VG  +   HPHGD S+Y +LV +A    + Y  I  QGNFGNI  GD+A+A RY E R++
Sbjct: 87  VGACMA-YHPHGDSSIYGALVTVAN---KEY-FIEKQGNFGNILTGDNASAARYIECRLS 141

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A   L   + +  +F D+Y+  + EPV  P+K P LL  GT GIAVGMAT I  HN  
Sbjct: 142 PLARETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFN 199

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A        +I I +   + I PDF  GGI+       +  Y  GRG   VRA+  
Sbjct: 200 ELLKA--------QIKILRGQRFEIYPDFLCGGIMD------ISQYDFGRGKVTVRAKID 245

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPK 316
           +      +  +V+ ++        L+  I E     +I +   I+D +AE V I +  P 
Sbjct: 246 I----LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIKIAS-IQDYTAEHVEIEINLP- 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            R +  D  + +++  +  E     N+ V+  GR  ++      + E L H  + L
Sbjct: 300 -RGVQADWALNALYAFTQCEVSLSPNITVIQRGRPKEIH-----VGEVLHHNTQTL 349


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 175/307 (57%), Gaps = 11/307 (3%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  G
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--E 304
           RG    RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D  +
Sbjct: 60  RGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTD 119

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                RIV+  K    DP  ++  +F  + ++  F +N   L  GR P  M L  +L+ W
Sbjct: 120 RHNGTRIVIEIKT-GFDPHAVLVQLFKHTPLQDNFAMNNVALVEGR-PHTMGLKEMLQVW 177

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           + HRR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR   + D  K  ++  F
Sbjct: 178 VDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVF 237

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L E Q   IL+LRLR L K+   ++++E D+L    E++  +L S  +  +Q+  +  E
Sbjct: 238 DLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA-EALDQVVTD--E 294

Query: 482 VKEIFSK 488
           + E  +K
Sbjct: 295 MDEAVAK 301


>gi|332883978|gb|EGK04258.1| hypothetical protein HMPREF9456_01286 [Dysgonomonas mossii DSM
           22836]
          Length = 910

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 181/335 (54%), Gaps = 32/335 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M  M       + K A I+G  + + HPH
Sbjct: 57  FLDYASYVILERAVPHISDGFKPVQRRIMHSMKRMD---DGRYNKVANIIGHTM-QFHPH 112

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA-ELILQGV 147
           GD S+ D+LV+L Q  +    L+  QGN+GN+  GD AAA RY EAR+++ A E+I    
Sbjct: 113 GDASIGDALVQLGQKDL----LVDCQGNWGNVFTGDGAAAPRYIEARLSKFALEVIF--- 165

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  ++C+AA+A  
Sbjct: 166 NPKTTEWKPSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNDLCDAAIA-- 223

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
               +  EK   Y   PDF TGG I       V  Y  G  G  V+ R  + ++   +  
Sbjct: 224 ---HLQGEKFAFY---PDFQTGGYID------VSKYNDGERGGSVKVRAKISKLDNKT-- 269

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+++IPY    S ++E I +     +I + + + D +A++V I +      +  D  ++
Sbjct: 270 LVISDIPYGRTSSSVVESILKANDKGKIKIRK-VDDITAQNVEIQVHLA-AGVSSDKTID 327

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +++  +D E     N  V+   + P  + +  IL+
Sbjct: 328 ALYAFTDCEISISPNCCVIEDNK-PYFLTVSDILR 361


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 174/312 (55%), Gaps = 29/312 (9%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +E +L YA   I ERA+P + DGFKPV RRI+ +M +  LD G  + K A IVG  + + 
Sbjct: 31  KEWFLDYASYVILERAVPAIEDGFKPVQRRIMQSMKD--LDDGR-YNKVANIVGHAM-QY 86

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  IL 
Sbjct: 87  HPHGDASISDAMVQIGQKDM----LIDMQGNWGNIFTGDPAAASRYIEARLSKFALEIL- 141

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+    EPV  P KFP LLA G  GIAVG++T +  HN  E+ +A++ 
Sbjct: 142 -FNPKITEWQSSYDGRRKEPVNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFIELIDASIK 200

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + I PDFPTGG      E  V +Y  G  G +VR R  +    + +
Sbjct: 201 HLQGK--------RFTIYPDFPTGG------EIDVTNYNDGLRGGKVRVRAKMHAPDKNT 246

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPY    S LI+ I +    K    ++ I D +A DV I++   +  + PD  
Sbjct: 247 --IIITEIPYSTNTSSLIDSILKA-NEKGKIKIKKIEDNTAADVEIMIH-LHSGISPDKT 302

Query: 326 MESIFMLSDMET 337
           M++++  ++ E+
Sbjct: 303 MDALYAFTNCES 314


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/148 (48%), Positives = 104/148 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+  G 
Sbjct: 4   MKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTSGD 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  +++
Sbjct: 64  YHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQLME 123

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            +D++ V+    Y+E   EP VFPSKFP
Sbjct: 124 DLDKNTVEMVPNYDETKKEPTVFPSKFP 151


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/126 (59%), Positives = 98/126 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 194 HNVQEI 199
           HN+ E+
Sbjct: 121 HNLTEV 126


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 182/358 (50%), Gaps = 30/358 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I +RA+P + DG KPV RRI+H M EM       F K A IVG  + + HPH
Sbjct: 74  FLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEME---DGRFHKLANIVGATM-RFHPH 129

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+  +LV L Q    R  L+  QGNFGN+  GD AAA RY EAR+T  A+ +L   +
Sbjct: 130 GDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARLTAFAKDVL--FN 183

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+    EPV  P+KFP +L  G  GIAVG+AT I  HN  ++C AA+  + 
Sbjct: 184 PKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNFNDLCRAAINHLQ 243

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + I PDFPTGG+      +    Y  G  G +V+ R  +E   R  + +
Sbjct: 244 GK--------TFRIYPDFPTGGV------ADFSEYNDGERGGKVKIRAKIEI--RSKYLL 287

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            +TE+P+      LIE I       +I  +  + D +A+ V I++     S DP+ L++ 
Sbjct: 288 AITELPFGSTTESLIESILAANAKGKIK-IRHVDDNTADAVEILVHLPQGS-DPEKLIQQ 345

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           +++ +  +T       V+   + P  + +  ILK  +   + +L R    R   ++++
Sbjct: 346 LYVFTACQTNLSPAACVIEDDK-PHFLGVREILKRSVDKTKALLKRELEIRQAELEQQ 402


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 110/152 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 5   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 64

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 65  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 124

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           +++ + EP V P+ FPNLL NG +GI+ G AT
Sbjct: 125 FDDTEKEPTVLPAAFPNLLVNGATGISAGYAT 156


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + 
Sbjct: 63  QDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QF 118

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+
Sbjct: 119 HPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LE 171

Query: 146 GV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            V +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++
Sbjct: 172 TVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASV 231

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +           E+ + PDF TGG I       V  Y  G  G  V+ R  + ++   
Sbjct: 232 AYLRGE--------EFTLYPDFQTGGYID------VSKYNDGERGGSVKVRAKITKLDNK 277

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDP 322
           +  +V++EIPY    S LIE I +     +I  ++ + D +A +V I+  L P    +  
Sbjct: 278 T--LVISEIPYGKTTSTLIESILKANDKGKIK-IKKVDDNTARNVEILVHLAP---GVSS 331

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D  +++++  +D E     N  V+ M   P  + +  +LK
Sbjct: 332 DKTIDALYAFTDCEISISPNCCVI-MDNKPHFLTVSDVLK 370


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 31/313 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            ++ +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  + K A IVG  + +
Sbjct: 29  FKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD--LDDGR-YNKVANIVGHTM-Q 84

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
            HPHGD S+ D++V++ Q  +    LI  QGN+GN + GDSAAA RY EAR+++ A  +L
Sbjct: 85  YHPHGDASIADAMVQMGQKDL----LIDTQGNWGNTLTGDSAAASRYIEARLSKFALEVL 140

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
                   D++ +Y+    EP+  P KFP LLA G  GIAVG++T +  HN  E+ +A++
Sbjct: 141 --FSPKITDWQASYDGRRKEPINLPVKFPLLLAQGAEGIAVGLSTKVLPHNFVELIDASV 198

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             ++          ++ I PDFP+ G      E+    Y+ G+ G R+R R  + ++ + 
Sbjct: 199 KHLEGK--------KFKILPDFPSAG------EADFSDYKDGKRGGRIRVRAKISQLDKN 244

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPD 323
           +  +V+TEIP+    + LI+ I +     ++  ++ I D ++  V I++  P    L PD
Sbjct: 245 T--LVITEIPFTTTTTSLIDNILKANDKGKLK-IKRIEDNTSSQVEILVHLPA--GLSPD 299

Query: 324 LLMESIFMLSDME 336
             + +++  ++ E
Sbjct: 300 KTIGALYAFTNCE 312


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 187/354 (52%), Gaps = 34/354 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+HAM    +D G  + K A IVG+ + + HPH
Sbjct: 64  FLDYASYVILERAVPHVEDGLKPVQRRILHAMKV--VDDGR-YNKVANIVGQTM-QYHPH 119

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 120 GDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAAGRYIEARLSKFANEVV--FN 173

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +   ++  TY+    EPV  P KFP LLA G+ GIAVG+A+ I  HN  E+  A +A + 
Sbjct: 174 KKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELINACIAHLQ 233

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     E+ + PDFPTGG+   SR      Y  G  G  V+ R  + ++ + +  +
Sbjct: 234 G--------REFQLYPDFPTGGMADVSR------YNDGLRGGAVKVRAKISKIDKRT--L 277

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL--FPKNRSLDPDLLM 326
            +TEIPY      + + I +     +I  ++ + D +A+ V IV+   P   S   D  +
Sbjct: 278 AITEIPYTTTTESIKDSIIKANDKGKIK-IKKVDDNTADRVEIVIQVSPDESS---DKTI 333

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           ++++  +D E     N  ++   + P  + +  IL+    H + +L R    R+
Sbjct: 334 DALYAFTDCEVSIAPNACLIWEDK-PHFLGVSEILRRSAEHTKWLLGRELEIRL 386


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 185/350 (52%), Gaps = 32/350 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  K  +L    +E ++ Y    I+ERAIPDL DG KPV RRI+  +    +D G  F K
Sbjct: 2   ETAKYGNLHKLFDENFIDYTSYVIRERAIPDLADGLKPVQRRILQTLH--NVDDGR-FHK 58

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A +VGE + KLHPHGD S++ +LV LA     +  L+  QGNFGNI  GDSA+A RY E
Sbjct: 59  VANVVGETM-KLHPHGDASIFSALVNLAN----KGYLVDRQGNFGNIYTGDSASAARYIE 113

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+T +A   +   + +  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  
Sbjct: 114 CRLTPLARETM--FNRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMP 171

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A   ++           E+ + PDF  GG++       V +Y  G G  R R
Sbjct: 172 HNFCELLQAQKKILQGE--------EFAVYPDFYQGGLLD------VSAYDDGNGRLRCR 217

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE  +    I++ EIP+      LIE + +   A +  +L  I D +AE+V I +
Sbjct: 218 AR--IEE--KDDKTIIIREIPFGTNTQGLIESVEKAARAGKFKIL-SINDYTAEEVEIEI 272

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
               R L  +  +++++  +D E     N  V+   R P ++ +  +L+E
Sbjct: 273 -KLARGLKAEETIKALYAFTDCELAISPNFTVIR-DRNPVILSVSEVLRE 320


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 125/174 (71%), Gaps = 3/174 (1%)

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ 
Sbjct: 1   EELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELI 60

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +E+
Sbjct: 61  DGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKTHIEK 119

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
                  IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+
Sbjct: 120 RANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVI 172


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 74/128 (57%), Positives = 101/128 (78%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELIL 144
            ++A  ++
Sbjct: 128 AKIAHELM 135


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/119 (61%), Positives = 97/119 (81%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 3   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++
Sbjct: 63  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELM 121


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 134/207 (64%), Gaps = 8/207 (3%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +++ +D+D  DF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN++E+ EA
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 203 ALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
               + +P  S E+LLE     I GPDFP G +IV  R+ I ++YR GRG   +RA   +
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTMRAVIDM 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPK 316
           EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+S+     R+V+  K
Sbjct: 120 EEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLK 179

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNM 343
            R   P ++M +++  + ++  F  NM
Sbjct: 180 -RDAQPRVVMNNLYKHTALQDTFGCNM 205


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 184/346 (53%), Gaps = 32/346 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIP+L DG KPV RRI+ ++ E        F K A I G    + HPH
Sbjct: 68  FLEYASYVIRDRAIPNLADGLKPVQRRILWSLHEKD---DGRFIKVATISGHC-AQYHPH 123

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           G+ ++ D+LV +     +RY LI GQGNFGNI  GD AAA RY E R+T++A   L   +
Sbjct: 124 GEAAIGDALVVITN---KRY-LIEGQGNFGNIYTGDPAAAPRYIECRLTELARNEL--FN 177

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++  +F  +Y+  + EPV  PSK P LL  GT GIAVGM+  I  HN  E+ EA +A++ 
Sbjct: 178 DELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNFPELLEAQIAIL- 236

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPTGG++ ++RE     Y  G+G  +VRA+       +    +
Sbjct: 237 -------KKQPFKVLPDFPTGGLM-DARE-----YADGKGSIKVRAKI----KAKDESTV 279

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+ EIP       LI  I +     +I  ++ I D ++E+  I +   +  +  D L+++
Sbjct: 280 VIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEAEIEIKAPS-GVSADQLIDA 337

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           ++  +D E      + V+   R P  M +  +L+E  A   + L R
Sbjct: 338 LYAFTDCEMSISSRIIVIRNNR-PVEMTVSEVLRENTAQLVDTLKR 382


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 99/124 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVA 140
           +++A
Sbjct: 128 SKIA 131


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/128 (56%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 36/340 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + 
Sbjct: 63  QDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QF 118

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+
Sbjct: 119 HPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LE 171

Query: 146 GV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            V +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++
Sbjct: 172 TVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASV 231

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +           E+ + PDF TGG I       V  Y  G  G  V+ R  + ++   
Sbjct: 232 AYLRGE--------EFTLYPDFQTGGYID------VSKYNDGERGGSVKVRAKITKLDNK 277

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDP 322
           +  +V++EIPY    S LIE I +     +I  ++ + D +A +V I+  L P    +  
Sbjct: 278 T--LVISEIPYGKTTSTLIESILKANDKGKIK-IKKVDDNTARNVEILVHLAP---GVSS 331

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D  +++++  +D E     N  V+ M   P  + +  +LK
Sbjct: 332 DKTIDALYAFTDCEISISPNCCVI-MDNKPHFLTVSDVLK 370


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 100/124 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 4   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 64  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 123

Query: 146 GVDE 149
            +++
Sbjct: 124 DLEK 127


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 33/311 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A+     
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDAS----- 234

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              I I K   + I PDF T GI      + V +Y  G  G RVR R  + ++ + +  +
Sbjct: 235 ---IKILKGKPFTIYPDFQTAGI------ADVSNYNDGLRGGRVRVRAKISQLDKQT--L 283

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
           V+T+IP+    S LI+ I +    K    ++ I D +A +V I+  LFP    + PD  +
Sbjct: 284 VITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTAAEVEILIHLFP---GVSPDKSI 339

Query: 327 ESIFMLSDMET 337
           ++++  +  ET
Sbjct: 340 DALYAFTACET 350


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/189 (44%), Positives = 134/189 (70%), Gaps = 4/189 (2%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 2   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 61

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L L+D+ + S+E L+++I GPDFPTGGII   ++ I+E+YR GRG  ++RA+  +E+  
Sbjct: 62  LLYLLDHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKIRAKTHIEKKS 120

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLD 321
                IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V+  K  ++ 
Sbjct: 121 NKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMS 179

Query: 322 PDLLMESIF 330
            ++++ ++F
Sbjct: 180 -EIVLNNLF 187


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 109/155 (70%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 5   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 64

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V     
Sbjct: 65  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPLAWN 124

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +++ + EP V P+ FPNLL NG +GI+ G AT  P
Sbjct: 125 FDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFP 159


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR+ ++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/172 (48%), Positives = 124/172 (72%), Gaps = 3/172 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L LIDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +E+  
Sbjct: 61  LLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKTHIEKRA 119

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
                IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+
Sbjct: 120 NKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVI 170


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 186/365 (50%), Gaps = 32/365 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N   L  E  +   L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M  
Sbjct: 43  NNLMGLFMETAQYGELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD- 101

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDS 125
                F K A +VGE + KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD 
Sbjct: 102 --DGRFHKVANVVGETM-KLHPHGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDG 154

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           A+A RY E R++ +A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAV
Sbjct: 155 ASAPRYIECRLSPLARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAV 212

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT I  HN  E+  A+       +I  E+  E    PDFP GG++  S       Y  
Sbjct: 213 GMATKIMPHNFGELLTAS------KQILREEPFELF--PDFPQGGLLDAS------GYED 258

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G  R RAR  +E   R    IV+ +IPY      LIE + +   A +  +L  I D +
Sbjct: 259 GNGRLRCRAR--IET--RDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKIL-SIDDYT 313

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDV I +    R    +  +++++  +D E     N  V+   + P +M +  +L+E  
Sbjct: 314 AEDVEIEI-KLARGFKAEETIKALYAFTDCEIPISPNFTVIRE-QTPAIMTVSEVLRENT 371

Query: 366 AHRRE 370
           A  R+
Sbjct: 372 ARLRQ 376


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 95/115 (82%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 3   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++
Sbjct: 63  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELM 117


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 182/358 (50%), Gaps = 34/358 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  +   L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M       F K
Sbjct: 2   ETAQYGELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHK 58

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTE 133
            A +VGE + KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD A+A RY E
Sbjct: 59  VANVVGETM-KLHPHGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDGASAPRYIE 113

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R++ +A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAVGMAT I  
Sbjct: 114 CRLSPLARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMP 171

Query: 194 HNVQEICEAALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN  E+  A+  ++ + P         + + PDFP GG++  S       Y  G G  R 
Sbjct: 172 HNFGELLTASKQILREEP---------FELFPDFPQGGLLDAS------GYEDGNGRLRC 216

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR       R    IV+ +IPY      LIE + +   A +  +L  I D +AEDV I 
Sbjct: 217 RARIET----RDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKIL-SIDDYTAEDVEIE 271

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +    R    +  +++++  +D E     N  V+   + P +M +  +L+E  A  R+
Sbjct: 272 I-KLARGFKAEETIKALYAFTDCEIPISPNFTVIRE-QTPAIMTVSEVLRENTARLRQ 327


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 127/179 (70%), Gaps = 3/179 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L L+D+ + S+E L+++I GPDFPTGGII   ++ I+E+YR GRG  ++RA+  +E+  
Sbjct: 61  LLYLLDHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKIRAKTHIEKKS 119

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
                IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V+  K  ++
Sbjct: 120 NKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAM 177


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 193/372 (51%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+HAM EM       F K A I+G+ + + HPH
Sbjct: 29  FLDYASYVILERAVPAIEDGLKPVQRRIMHAMKEMD---DGRFNKVANIIGQSM-QYHPH 84

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V L Q  +    LI  QGN+G+I  GD AAA RY EAR+++ A  ++   +
Sbjct: 85  GDASIGDAIVNLGQKDL----LIETQGNWGDIRTGDRAAAARYIEARLSKFALEVV--FN 138

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EP+  P KFP LLA G  GIAVG++T I  HN  E+ E ++ ++ 
Sbjct: 139 PQTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFCELIEGSIEILK 198

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             + ++         PDF TGG+      +    Y  G+ G +V+ R  +EE    S  I
Sbjct: 199 GNKTNVL--------PDFLTGGL------ADFSEYNGGQRGGKVKVRAKIEE--EDSKTI 242

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
           ++ EIP+      LI+ I +    K    ++ + D +A+DV I   L P    + PD+ +
Sbjct: 243 LIKEIPFGTTTDSLIDSILK-ANDKGKIKIKKVVDNTAKDVEIAVHLAP---GISPDVTI 298

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+ +   P  + ++ IL       R +L +          R+
Sbjct: 299 DALYAFTDCEVSISPNACVI-IDEKPVFLDVNDILTYNTKQTRALLKKELEI------RK 351

Query: 387 VEILKGLLIAYL 398
            E+++ LL + L
Sbjct: 352 AELMEKLLFSSL 363


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 95/115 (82%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 5   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 65  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 119


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 149/504 (29%), Positives = 244/504 (48%), Gaps = 58/504 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I +RA+P + DG KPV RR++H + +M  D G  F K A +VG  + KLHPH
Sbjct: 80  FLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDM--DDGR-FHKVANVVGATM-KLHPH 135

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+  +LV + Q    R  LI  QGN+GN + GD+AAA RY EAR+T  A  +L   +
Sbjct: 136 GDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARLTPFARDVL--FN 189

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                ++ +Y+    EPV  P+KFP +L  G  GIAVG++T I  HN  ++C AA+  + 
Sbjct: 190 PKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNFNDLCRAAINHLQ 249

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + I PDFPTGG            Y  G  G +V+ R  +EE  +   CI
Sbjct: 250 GK--------TFRILPDFPTGGT------GDFTDYNDGERGGKVKVRARIEEHSKSVLCI 295

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
             TE+PY V    LIE I       +I  ++ + D +A  V I++     S  PD +++ 
Sbjct: 296 --TELPYGVTTESLIESILAANAKGKIK-IKHVDDNTASKVEILVHLPPGS-QPDKVVQQ 351

Query: 329 IFMLSDMETRFPLNMNVLSMGR-------VPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++ +  + +  LN     + R        PQ M +  ILK  +   +E+L +    ++ 
Sbjct: 352 LYVFTSCQVQ--LNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKELLKQELEIKLG 409

Query: 382 AIDRR--VEILKGLLIA---YLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            ++++   + L+ + I    Y  I++      ++  IR   KP  +   R  +TE  +  
Sbjct: 410 ELEQQWHWDSLERIFIEERIYRRIEKSQTWESVLEEIRTGLKPF-IGNLRREVTEEDIVR 468

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW-NQIACEIREVKEIFSKS 489
           +  +R++ +     +Q    L       +KI+  +   K    N +A  +   + +  K 
Sbjct: 469 LTEIRIKRISAYNRFQADEAL-------KKIEEAIKETKHHLKNLVAYAVDWFERLQEKY 521

Query: 490 TDLGRRRTTFCEVSRADKATLQQA 513
               +RRTT+ E+++ D + +  A
Sbjct: 522 GKGVKRRTTYDEIAQIDASAVVSA 545


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 188/358 (52%), Gaps = 39/358 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIADALVQLGQKDL----LVDCQGNWGNILTGDSAAASRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 158 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIKYLH 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                     ++ + PDF TGG I       V  Y  G  G  VR R  +E++   +  +
Sbjct: 218 KE--------DFKLYPDFQTGGSI------DVSKYNDGERGGAVRVRSKIEKIDNKT--L 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            + EIPY    + + + I +     +I +  +ED+   S E + + L P    +  D  +
Sbjct: 262 AIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDLTSGSVE-ILVHLAP---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRRSSFR 379
           ++++  +D E     N  V+   + P  + +  +L++ + +     R+E+  RR+  R
Sbjct: 318 DALYAFTDCEVSISPNCCVID-NQKPHFLTVSDVLRKSVNNTLDLLRQELEIRRNEIR 374


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/152 (46%), Positives = 109/152 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 5   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 64

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           + R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 65  MARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 124

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           +++ + EP V P+ FPNLL NG +GI+ G AT
Sbjct: 125 FDDTEKEPTVLPAAFPNLLVNGATGISAGYAT 156


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 104/148 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++E YL Y++S I  RA+PD+RDG KP  RR++ AM ++ L  GA  +K A+I G+  G 
Sbjct: 5   MKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGDTSGD 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ +V  Y L+ GQGNFG+IDGD  AA RYTEAR+T+ +  +++
Sbjct: 65  YHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASMALME 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            +D++ V++   YNE   EP VFPSKFP
Sbjct: 125 DLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 187/353 (52%), Gaps = 36/353 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+  + L    E  +L YA   I ERA+P L DGFKPV RRI+H+M E  LD G  +
Sbjct: 39  VDENI--IPLSGLYENWFLDYASYVILERAVPSLHDGFKPVQRRILHSMKE--LDDG-RY 93

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRY 131
            K A ++G  + K HPHGD S+ D+LV+L     Q+  LI  QGN+GN + GD AAA RY
Sbjct: 94  NKVANVIGNTM-KYHPHGDASIGDALVQLG----QKELLIDCQGNWGNTLTGDGAAAPRY 148

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            EAR+++ A  ++   +     +  +Y+  + EP   P KFP LLA G  GIAVGMA  I
Sbjct: 149 IEARLSKFASHVV--FNPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGAEGIAVGMACKI 206

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+ + ++  +   +I         I PDF  GG+      +   +Y  G  G +
Sbjct: 207 LPHNFIELIDQSINHLRGKKIE--------IFPDFLNGGM------ADFTNYNDGLRGGK 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R  +++V   +  +++ EIP+    + LIE + +    K    ++ I D +A D  I
Sbjct: 253 VRVRAKIKKVDNKT--LIINEIPFGCTTTSLIESVIK-ANDKGKIKIKKIEDNTAADAEI 309

Query: 312 V--LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           V  L P    + PD  +++++  +D E     N +V+  G  P+ M +  ILK
Sbjct: 310 VIHLAP---GVSPDKTIDALYAFTDCEVSISPNASVID-GDTPRFMGVTEILK 358


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 106/139 (76%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 174/311 (55%), Gaps = 33/311 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               ++  +Y+   +EP+  P KFP LLA G  GIAVG++T +  HN  E+ +A+     
Sbjct: 180 PKITEWGLSYDGRKAEPINLPVKFPMLLAQGAEGIAVGLSTKVLPHNFNELIDAS----- 234

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              I I K   + + PDF T GI      + V +Y  G  G RVR R  + ++ + +  +
Sbjct: 235 ---IKILKGKPFTLYPDFMTQGI------ADVSNYNDGMRGGRVRVRAKISQLDKNT--L 283

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLLM 326
           V+T+IP+    S LI+ I +    K    ++ I D +A DV I+  LFP    + PD  +
Sbjct: 284 VITQIPFSTNTSSLIDSILK-ANDKGKIKIKKIEDNTAADVEILIHLFP---GVSPDKTI 339

Query: 327 ESIFMLSDMET 337
           +++F  +  ET
Sbjct: 340 DALFAFTACET 350


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 195/363 (53%), Gaps = 36/363 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +K VS  +  ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+       + K
Sbjct: 9   ETLKKVSRLY--KDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKELE---DGRYNK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A IVG  + K HPHGD S+ D++V++ Q    +  LI  QGN+GN+  GDSAAA RY E
Sbjct: 64  VANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNVYTGDSAAAARYIE 118

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  ++   +     +  +Y+  ++EP+  P KFP LLA G  GI VG++T +  
Sbjct: 119 ARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLSTKVMP 176

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ EA++A +        K  ++ + PDF TGG++       V +Y  G  G R+R
Sbjct: 177 HNFNELIEASIAYL--------KGKKFQLYPDFMTGGMLD------VSNYNDGERGGRLR 222

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI--AELIIAKRIPLLEDIRDESAEDVRI 311
           AR  + +  + + CI  TE+P+    S LI+ I  A      +I  +ED   +  E + I
Sbjct: 223 ARARIIQKDKHTLCI--TELPFSKTTSDLIDSIIKANEKGKIKIKKIEDNTSDQVE-INI 279

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            L   N  + PD ++++++  +D E     N  V+ +G  P  + +  ILK    H   +
Sbjct: 280 HL---NNDVSPDKMIDALYAFTDCEISISPNACVI-VGDKPMFLSVSEILKRNTDHTVSL 335

Query: 372 LFR 374
           L R
Sbjct: 336 LKR 338


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 132/188 (70%), Gaps = 4/188 (2%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +E+       IV
Sbjct: 61  KEASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKTHIEKRANKD-IIV 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMES 328
           + E+PYQ  K+RLIE+IA+L+  K+I  + +IRDES  E +R+V+  K  ++  ++++ +
Sbjct: 119 IDELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMS-EIVLNN 177

Query: 329 IFMLSDME 336
           +F  + ME
Sbjct: 178 LFKSTAME 185


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/381 (31%), Positives = 199/381 (52%), Gaps = 30/381 (7%)

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ L+E I GPDFPTG ++V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+
Sbjct: 145 LDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTEL 202

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFM 331
           PYQ     L +KIA+L+   ++  + D+RDE++     R+V+  K R     +++ +++ 
Sbjct: 203 PYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLK-RDAVAKVVLNNLYK 261

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+++ F  NM  L  G VP+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+
Sbjct: 262 HTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILR 320

Query: 392 GLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GLL A   IDE+IA+IR  D     +  ++    + E Q +AIL ++LR L  LE  +I 
Sbjct: 321 GLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQKIV 380

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E D L A+  + + +L S  +Q   ++ E+  + E +      G  R T       D +
Sbjct: 381 REHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY------GDDRKTKLIPYEGDMS 434

Query: 509 TLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E I V ++  G+I        R+ K     +     KE D +     + T 
Sbjct: 435 I--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTH 492

Query: 561 DRILLLSTDG-----KAYTLP 576
             +L  +  G     KAY LP
Sbjct: 493 HWLLFFTNKGRVYRAKAYELP 513


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 132/194 (68%), Gaps = 7/194 (3%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT
Sbjct: 2   RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 61

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG 
Sbjct: 62  DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 121

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            R+RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  + 
Sbjct: 122 VRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 176

Query: 309 -VRIVLFPKNRSLD 321
             R+V+ P++  +D
Sbjct: 177 PTRLVIVPRSNRVD 190


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 95/119 (79%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 99/124 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVA 140
            ++A
Sbjct: 128 AKIA 131


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/126 (57%), Positives = 97/126 (76%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KK
Sbjct: 6   KEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVA 140
           RM ++ 
Sbjct: 126 RMAKIG 131


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 131/185 (70%), Gaps = 4/185 (2%)

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L
Sbjct: 1   IDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYL 60

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           IDN E S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +E+      
Sbjct: 61  IDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVRAKTHIEKRANKD- 118

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL 325
            IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  E +R+V+  K  ++  +++
Sbjct: 119 IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMS-EIV 177

Query: 326 MESIF 330
           + ++F
Sbjct: 178 LNNLF 182


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 109/154 (70%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
            +ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 6   FRERALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 65

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 66  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 125

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           +++ + EP V P+ FPNLL NG +GI+ G AT I
Sbjct: 126 FDDTEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 110/153 (71%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            F   +++ + EP V P+ FPNLL NG+SGI+ 
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISA 153


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 221/452 (48%), Gaps = 72/452 (15%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+HA+ EM       + K A +VG+ + + HPH
Sbjct: 31  FLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD---DGRYNKVANVVGQTM-QYHPH 86

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA-ELILQGV 147
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A E++    
Sbjct: 87  GDASIADAMVQIGQKDL----LIDTQGNWGNILTGDGAAASRYIEARLSKFALEVVFS-- 140

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
                +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  HN  E+ +A++  +
Sbjct: 141 -PKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDASIKHL 199

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                       + + PDFPT GII       + +Y  G  G +VR R  + +  + +  
Sbjct: 200 QGK--------RFKLYPDFPTAGII------DIGNYNDGERGGKVRVRARIAQQDKNT-- 243

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V++EIPY    S LI+ I +     +I + +   + +AE   +V  P    + PD  ++
Sbjct: 244 LVISEIPYGTNTSSLIDSILKANDKGKIKIKKIEDNTAAEVEILVHLPS--GISPDKTID 301

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL---KEWLAHRREVLFRRSSFRMQAID 384
           +++  +  ET                + PL  I+   K       E+L R +   ++ + 
Sbjct: 302 ALYAFTACET---------------SISPLGCIIEDNKPVFMGVSEMLRRSTDHTVELLQ 346

Query: 385 RRVEILKGLLIA----------------YLNIDE------IIAIIRNEDKPKPVMVSRFS 422
             +EIL G L                  Y +I+E      +IA I    KP    + R  
Sbjct: 347 AELEILLGELQEQWHAASLERIFIENRIYRDIEEEETWEGVIAAIGKGLKPHTGHLRR-E 405

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           +TE  +  +  +R++ + + +  + +  LDNL
Sbjct: 406 VTEEDIVRLTEIRIKRISRFDLDKAQEHLDNL 437


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/122 (59%), Positives = 95/122 (77%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 98/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 102/145 (70%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M  + L     FKKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            +PLI   GN G+ID D AAA RYTE+R+ +++EL+L+ +D   V     +++ + EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIP 192
            P+ FPNLL NG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/122 (59%), Positives = 95/122 (77%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 44/390 (11%)

Query: 16  NVKAVSLRFALEERY----LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + K V  ++ L   Y    L YA   I ERA+P + DG KPV RRI+H+M  M       
Sbjct: 30  DTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRME---DGR 86

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYR 130
           + K A IVG  + + HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA R
Sbjct: 87  YNKVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPR 141

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           Y EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ 
Sbjct: 142 YIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSK 199

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  HN  E+C+A++  +   E  +         PDF TGG I       V  Y  G  G 
Sbjct: 200 ILPHNFNELCDASIRYLHEEEFKLY--------PDFQTGGSID------VSKYNDGERGG 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAED 308
            VR R  +E++   +  + + EIPY    + + + I +     +I +  +ED+   + E 
Sbjct: 246 AVRVRAKIEKIDNKT--LAIKEIPYGKTVANVCDSIVKASEKGKIKIKKVEDLTSGNVE- 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           + + L P    +  D  +++++  +D E     N  V+   + P  + +  +L      R
Sbjct: 303 ILVHLAP---GVSSDKTIDALYAFTDCEVSISPNCCVID-DQKPHFLTVSDVL------R 352

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           + V    S  R +   R+ EIL+ L  A L
Sbjct: 353 KSVDNTLSLLRQELEIRKDEILESLHFASL 382


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 176/310 (56%), Gaps = 31/310 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M E  LD G  + K A IVG  + + HPH
Sbjct: 62  FLDYASYVILERAVPAIEDGFKPVQRRIMHSMKE--LDDGR-YNKVANIVGHTM-QYHPH 117

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    +I  QGN+GNI  GDSAAA RY EAR+++    +L    
Sbjct: 118 GDASIGDAMVQIGQKDL----IIDMQGNWGNILTGDSAAASRYIEARISKFGHDVLYS-- 171

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               ++  +Y+   +EP+  P KFP LLA G  GIAVG++T +  HN  E+ ++++ ++ 
Sbjct: 172 PKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGIAVGLSTKVLPHNFNELIDSSIKIL- 230

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K   + + PDFPT GI      + V +Y  G  G RVR R  + ++ + +  +
Sbjct: 231 -------KGKPFTLFPDFPTAGI------ADVSNYNDGLRGGRVRVRAKIGQLDKQT--L 275

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V+T+IP+    S LI+ I +    K    ++ I D +A +V I++  P   S  PD +++
Sbjct: 276 VITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTAAEVEILIHLPAGVS--PDKMID 332

Query: 328 SIFMLSDMET 337
           +++  +  ET
Sbjct: 333 ALYAFTACET 342


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 192/368 (52%), Gaps = 52/368 (14%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 41  FLDYASYVILERAVPAIEDGFKPVQRRILHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 96

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++    
Sbjct: 97  GDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV--FS 150

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EPV  P KFP LLA G  GIAVG++T +  HN  E+ +A++  + 
Sbjct: 151 PKITEWQLSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFNELIDASIKHL- 209

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG-RGG-FRVRARWCVEEVGRGSW 266
                  K   + + PDFPT GII       V +Y  G RGG  RVRAR   ++      
Sbjct: 210 -------KGQRFKLYPDFPTAGIID------VNNYNDGLRGGKIRVRARMSQKDKN---- 252

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            +V+ EIPY    S LI+ I +    K    ++ I D +A DV I++   +  + PD  +
Sbjct: 253 TLVINEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAADVEILVHLPS-GISPDKTI 310

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +  E+                + PL  I+++     + +    S    Q+ D  
Sbjct: 311 DALYAFTSCES---------------SISPLSCIIED----NKPIFIGVSEMLKQSTDLT 351

Query: 387 VEILKGLL 394
           VE+LK  L
Sbjct: 352 VELLKAEL 359


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 190/372 (51%), Gaps = 40/372 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  + + HPH
Sbjct: 34  FLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QFHPH 89

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A  ++   +
Sbjct: 90  GDASIADALVQLGQKDL----LVDCQGNWGNILTGDSAAASRYIEARLSKFALDVV--FN 143

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A++  + 
Sbjct: 144 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIRYLH 203

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDF TGG I       V  Y  G  G  VR R  +E++   +  +
Sbjct: 204 KEGFKLY--------PDFQTGGSID------VSKYNDGERGGTVRVRSKIEKIDNKT--L 247

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            + EIPY    + + + I +     +I +  +ED+   S E    +L      +  D  +
Sbjct: 248 AIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDLTSGSVE----ILVHLAAGVSSDKTI 303

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +L++ + +  ++L      R++   RR
Sbjct: 304 DALYAFTDCEVSISPNCCVID-DQKPHFLTVSDVLRKSVDNTLDLL------RLELEIRR 356

Query: 387 VEILKGLLIAYL 398
            EI + L  A L
Sbjct: 357 NEIRESLHFASL 368


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 98/124 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVA 140
            ++A
Sbjct: 128 AKIA 131


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 44/390 (11%)

Query: 16  NVKAVSLRFALEERY----LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + K V  ++ L   Y    L YA   I ERA+P + DG KPV RRI+H+M  +       
Sbjct: 30  DTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLE---DGR 86

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYR 130
           + K A IVG  + + HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA R
Sbjct: 87  YNKVANIVGHTM-QFHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPR 141

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           Y EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ 
Sbjct: 142 YIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSK 199

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  HN  E+C+A++  +   E  +         PDF TGG I       V  Y  G  G 
Sbjct: 200 ILPHNFNELCDASIHYLHEEEFKLY--------PDFQTGGSID------VSKYNDGERGG 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAED 308
            VR R  +E++   +  + + EIPY    + + + I +     +I +  +ED+   + E 
Sbjct: 246 AVRIRAKIEKIDNKT--LAIKEIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGNVE- 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           + + L P    +  D  +++++  +D E     N  V+   + P  + +  IL      R
Sbjct: 303 ILVHLAP---GVSSDKTIDALYAFTDCEVSISPNCCVID-DQKPHFLTVSNIL------R 352

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           + V    S  R +   R+ EIL+ L  A L
Sbjct: 353 KSVDNTLSLLRQELEIRKDEILESLHFASL 382


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   +  E+ + PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 --------RGEEFALYPDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L+       E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLRHSTDRTLELL--REELKIQ 386


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   +  E+ + PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 --------RGEEFALYPDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L+       E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLRHSTDRTLELL--REELKIQ 386


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E ++         PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 RGEEFALY--------PDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L+       E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLRHSTDRTLELL--REELKIQ 386


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 96/121 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 T 137
            
Sbjct: 128 A 128


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 164/622 (26%), Positives = 295/622 (47%), Gaps = 80/622 (12%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSIP HN+ E+ +A +A ++
Sbjct: 36  KNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLE 95

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-VGRGSW- 266
           +  ++ E LL YI GPDFPTGG++V +++ I   Y  G G  ++R +   E    RG   
Sbjct: 96  DESVANEDLLTYIQGPDFPTGGLVV-NKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKD 154

Query: 267 CIVVTEIPYQV---QKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDP 322
            +V+TEIPY +      + +  +  L+ +K+   + DI +ES+ E +RIVL  K +  D 
Sbjct: 155 KLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELK-KGTDI 213

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           + L   ++  + +E  F +NM  +  GR P+ +     L++ +AH  E  +     + Q 
Sbjct: 214 ERLKNLLYKKTKLEDTFGVNMLAIVDGR-PETLS----LRDIIAHHTEFHYGLVKRKYQT 268

Query: 383 I-----DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---------------------V 416
           +     D+R E+ +GL+ A   ID II I+R     K                      +
Sbjct: 269 LLSKLYDQR-EVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFKSSESMI 327

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              + S TE Q +AIL+LRL  L  LE   ++ E + ++A+  + + +L++       + 
Sbjct: 328 EACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMK 387

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            ++ ++K+ + +      RRT    V    +A  ++  +++E +  V+   G+ ++    
Sbjct: 388 QDLMKIKKEYQRE-----RRTV---VEDGAEAVFEEEPLKEEQVYFVMDRFGYAKTFDKA 439

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591
           +   +  +       K  +    TD+I + +  G     K   +PAG     +  G  I 
Sbjct: 440 TYQRNQENASR--DYKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKY---KDKGTPID 494

Query: 592 LLIDLNHNQDIVT------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            L + + + + +       A  +DS   L   + +G   IV  +E    T++  +  K+S
Sbjct: 495 NLGNYDSSDEAIIAVLAAEAMTHDS---LFFATEQGMLKIVSGTEFQV-TKRTVSATKLS 550

Query: 646 SEEKMKLVVK--------VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDG 695
             + + L VK        +  D V +  +    L FS++++PE  +G  GVR ++  KD 
Sbjct: 551 DGDAL-LSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDD 609

Query: 696 GISDVICFKICEGLTWIDSAGR 717
            +      +  +G+T +D  G+
Sbjct: 610 ILLHTYLME-ADGITSMDYKGK 630


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E ++         PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 RGEEFALY--------PDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L+       E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLRHSTDRTLELL--REELKIQ 386


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
              E ++         PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 RGEEFALY--------PDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L+       E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLRHSTDRTLELL--REELKIQ 386


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/122 (59%), Positives = 95/122 (77%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 181/346 (52%), Gaps = 34/346 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+HAM  +       + K A +VG+ + + HPH
Sbjct: 64  FLDYASYVILERAVPHVEDGLKPVQRRILHAMKVVD---DGRYNKVANLVGQTM-QYHPH 119

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 120 GDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAAGRYIEARLSKFALDVV--FN 173

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +   ++  +Y+    EPV  P KFP LLA G+ GIAVG+A+ I  HN  E+  AA+A + 
Sbjct: 174 KKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELINAAIAHLQ 233

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             +  +         PDFPTGG+   SR      Y  G  G  V+ R  + ++ + +  +
Sbjct: 234 GRDFQLY--------PDFPTGGMADVSR------YNDGLRGGTVKVRAKISKIDKRT--L 277

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL--FPKNRSLDPDLLM 326
            +TEIPY      + + I +     +I + + + D +A+ V IV+   P   S   D  +
Sbjct: 278 AITEIPYTTTTESIKDSIIKANDKGKIKIRK-VDDNTADKVEIVIQVSPDESS---DKTI 333

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++++  +D E     N  V+     P  + +  IL+    H + +L
Sbjct: 334 DALYAFTDCEVSIAPNSCVI-WDEKPHFLGVSEILRRSAEHTKSLL 378


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF++ Y+  + EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 159/290 (54%), Gaps = 42/290 (14%)

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGS 265
           IDN +ISIE L+E+I GPDFPT  II   R  I E+YR GRG   +RAR  VE +   G 
Sbjct: 1   IDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEADAKTGR 59

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324
             I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +RIV+  K  ++  ++
Sbjct: 60  ETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVG-EV 118

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ RR+ F ++   
Sbjct: 119 VLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTRRTIFELRKAR 177

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  IL+ L IA  NID II +IR    P   K  ++SR                     
Sbjct: 178 DRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARP 237

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                        + LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 238 EWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 287


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 96/122 (78%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 225/452 (49%), Gaps = 72/452 (15%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 33  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 88

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++    
Sbjct: 89  GDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV--FS 142

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  HN  E+ ++++  + 
Sbjct: 143 PKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDSSIKHL- 201

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  K  ++ + PDFPT GII       V  Y  G  G ++R R  + +  + +  +
Sbjct: 202 -------KGQKFKLFPDFPTSGIID------VTGYNDGLRGGKIRVRAKISQSDKNT--L 246

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSLDPDLLME 327
           V++EIPY    S LI+ I +    K    ++ I D +A DV I++  P    + PD  ++
Sbjct: 247 VISEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAADVEILVHLPA--GISPDKTID 303

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL---KEWLAHRREVLFRRSSFRMQAID 384
           +++  +  E+                + PL  I+   K       E+L R + + ++ + 
Sbjct: 304 ALYAFTACES---------------SISPLGCIIEDNKPLFIGVTEMLQRSTDYTVELLK 348

Query: 385 RRVEILKGLLIA----------------YLNIDE------IIAIIRNEDKPKPVMVSRFS 422
             +EI  G L                  Y +I+E      +IA I    KP    + R +
Sbjct: 349 EELEIQLGELEEQWHFSSLERIFIENRIYRDIEEEETWEGVIAAIDKGLKPHTKHLKR-A 407

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           +TE  +  +  +R++ + K +  + +  LD+L
Sbjct: 408 VTEEDITRLTEIRIKRISKFDLDKAQQLLDSL 439


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 186/335 (55%), Gaps = 31/335 (9%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D++ N ++  +E +K V+  +  ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 6   DDLLNEDSGNQETIKKVTGMY--KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 63

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
             LD G  + K A IVG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 64  --LDDGR-YNKVANIVGHTM-QYHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILT 115

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P  FP LLA G  G
Sbjct: 116 GDRAAASRYIEARLSKFALDVV--YNPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEG 173

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ +A++  +        K   + I PDFPT GI      +   +
Sbjct: 174 IAVGLSTKILPHNFIELIDASVKHL--------KGKRFTILPDFPTAGI------ADFTN 219

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G +VR R  + +  R    + +TEIP+    S LI+ I +    K    ++ I 
Sbjct: 220 YNDGLRGGKVRVRAKIAQ--RDKNTLAITEIPFATTTSSLIDSILKA-NDKGKIKIKKIE 276

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
           D +A +V I++   +  L PD  +++++  ++ ET
Sbjct: 277 DNTAAEVEILIHLPS-GLSPDKTIDALYAFTNCET 310


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 200/400 (50%), Gaps = 48/400 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A++A + 
Sbjct: 158 PKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I  SR      Y  G  G  V+ R  + ++   +  I
Sbjct: 218 GEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINKIDNKTLSI 263

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
              E+P+      + + I +     +I +  +ED+  E  E + + L P    +  D  +
Sbjct: 264 A--EVPFGKTVPGVCDSIVKASEKGKIKIRKVEDLTSEKVE-ILVHLAP---GVSSDKTL 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK           + +   +  + + 
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEKK-PHFLTVSAVLK-----------KATDNTLSLLRQE 365

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +EI KG L+  L+   +  I   E   K V   +F  +EN
Sbjct: 366 LEIHKGELLENLHFASLEKIFIEERIYKEV---KFEQSEN 402


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 200/400 (50%), Gaps = 48/400 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A++A + 
Sbjct: 158 PKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I  SR      Y  G  G  V+ R  + ++   +  I
Sbjct: 218 GEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINKIDNKTLSI 263

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
              E+P+      + + I +     +I +  +ED+  E  E + + L P    +  D  +
Sbjct: 264 A--EVPFGKTVPGVCDSIVKASEKGKIKIRKVEDLTSEKVE-ILVHLAP---GVSSDKTL 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK           + +   +  + + 
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEKK-PHFLTVSAVLK-----------KATDNTLSLLRQE 365

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +EI KG L+  L+   +  I   E   K V   +F  +EN
Sbjct: 366 LEIHKGELLENLHFASLEKIFIEERIYKEV---KFEQSEN 402


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 108/164 (65%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M  +GL    AFKKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            G+ID D AAA RYTE R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL 
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           NGT GIA G AT IP HN+ E+ +A +  + N      K+ + I
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQII 169


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 194/363 (53%), Gaps = 49/363 (13%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR--GSW 266
           NPE+++++L++YI GPDFPT  II   R  I+E+YR GRG   +RAR  VE++ +  G  
Sbjct: 1   NPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQ 59

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P++++
Sbjct: 60  QIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVIL 119

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            +++  + +++ F +N+  L  GR P+++ L  +L+ ++ HRREV+ RR+ F ++    R
Sbjct: 120 NNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTVFELRKARER 178

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR---------- 420
             IL+G  +A  NID +IA+I+    P                   MV R          
Sbjct: 179 GHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPEN 238

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +LNS  
Sbjct: 239 LDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSAT 298

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+  ++  +  +     RRT   + +R D  TL   + E+E + V IS+ G+
Sbjct: 299 RLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV-VTISHGGY 350

Query: 530 IRS 532
            ++
Sbjct: 351 AKT 353


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 189/378 (50%), Gaps = 33/378 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N     L  A +  +L YA   I +RA+P + DG KPV RRI+H + E   D G  F K
Sbjct: 73  KNNDNAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTLWEK--DDGR-FHK 129

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTE 133
            A IVG  +   HPHGD S+  +LV +AQ    R  LI  QGNFGN + GD AAA RY E
Sbjct: 130 VANIVGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNALTGDDAAAPRYIE 184

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L   +     ++ +Y+    EPV  P+KFP  L  G  GIAVG+AT I  
Sbjct: 185 ARLTPFAREVL--FNPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGADGIAVGLATKILP 242

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  ++C AA+  ++          ++ I PDF +GGI      +    Y  G  G +++
Sbjct: 243 HNFNDLCRAAINHLNGK--------KFRIVPDFASGGI------ADFSEYNDGERGGKIK 288

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +E   R  + + +TE+PY      LIE I       +I  +  + D +A+ V I++
Sbjct: 289 IRAKIEI--RSKYLLAITELPYGATTVSLIESIVSANNKGKIK-IRHVDDNTADQVEILV 345

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                S D + ++  +++ +D +        V+   +VP     DG  +E  A  R +  
Sbjct: 346 HLPQGS-DAEQVINQLYVFTDCQISISPAACVIE--QVPARTGDDG--REIPAQDRPIFT 400

Query: 374 RRSSFRMQAIDRRVEILK 391
             S    +++D+ V++LK
Sbjct: 401 GVSEILRRSVDKTVQLLK 418


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 38/356 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 65  FLDYASYVILERAVPHINDGLKPVQRRILHSMRR--LDDGR-YNKVANIVGHTM-QFHPH 120

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGV- 147
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A   L+ V 
Sbjct: 121 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA---LETVF 173

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ +A++A +
Sbjct: 174 NPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASIAYL 233

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
                   +  E+ + PDF TGG I       +  Y  G  G  V+ R  + ++   +  
Sbjct: 234 --------RGEEFALYPDFQTGGSID------IAKYNDGERGGSVKVRAKIGKLDNKT-- 277

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV--LFPKNRSLDPDLL 325
           +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+  L P    +  D  
Sbjct: 278 LVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEILVHLAP---GVSSDKT 333

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           +++++  +D E     N  V+   + P  + +  +L        E+L  R   ++Q
Sbjct: 334 IDALYAFTDCEISISPNCCVIKEDK-PHFLTVSDVLHHSTDRTLELL--REELKIQ 386


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 202/400 (50%), Gaps = 48/400 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A++A + 
Sbjct: 158 PKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYL- 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  +  E+ + PDF TGG I  SR      Y  G  G  V+ R  + ++   +  I
Sbjct: 217 -------RGEEFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKIDNKTLSI 263

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
              E+P+      + + I +     +I +  +ED+  E  E + + L P    +  D  +
Sbjct: 264 A--EVPFGKTVPGVCDSIVKASEKGKIKIRKVEDLTSEKVE-ILVHLAP---GVSSDKTL 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK           + +   +  + + 
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEKK-PHFLTVSAVLK-----------KATDNTLSLLRQE 365

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +EI KG L+  L+   +  I   E   K V   +F  +EN
Sbjct: 366 LEIHKGELLENLHFASLEKIFIEERIYKEV---KFEQSEN 402


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/122 (57%), Positives = 92/122 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  +K +ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD
Sbjct: 3   GYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGD 62

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RYTEAR+ +V+  +L  +DED +DFR  Y+  ++EPVV P++FPNLL NG SG+A
Sbjct: 63  PPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASGVA 122

Query: 185 VG 186
           VG
Sbjct: 123 VG 124


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 202/400 (50%), Gaps = 48/400 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A++A + 
Sbjct: 158 PKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYL- 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  +  E+ + PDF TGG I  SR      Y  G  G  V+ R  + ++   +  I
Sbjct: 217 -------RGEEFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKIDNKTLSI 263

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
              E+P+      + + I +     +I +  +ED+  E  E + + L P    +  D  +
Sbjct: 264 A--EVPFGKTVPGVCDSIVKASEKGKIKIRKVEDLTSEKVE-ILVHLAP---GVSSDKTL 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK           + +   +  + + 
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEKK-PHFLTVSAVLK-----------KATDNTLSLLRQE 365

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +EI KG L+  L+   +  I   E   K V   +F  +EN
Sbjct: 366 LEIHKGELLENLHFASLEKIFIEERIYKEV---KFEQSEN 402


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 200/400 (50%), Gaps = 48/400 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DG KPV RRI+H+M    LD G  + K A IVG  + + HPH
Sbjct: 48  FLDYASYVILERAVPHINDGLKPVQRRILHSMKR--LDDGR-YNKVANIVGHTM-QFHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++   +
Sbjct: 104 GDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A++A + 
Sbjct: 158 PKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E  +         PDF TGG I  SR      Y  G  G  V+ R  + ++   +  I
Sbjct: 218 GEEFKLY--------PDFQTGGSIDVSR------YNDGERGGMVKVRAKINKIDNKTLSI 263

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
              E+P+      + + I +     +I +  +ED+  E  E + + L P    +  D  +
Sbjct: 264 A--EVPFGKTVPGVCDSIVKASEKGKIKIRKVEDLTSEKVE-ILVHLAP---GVSSDKTL 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           ++++  +D E     N  V+   + P  + +  +LK           + +   +  + + 
Sbjct: 318 DALYAFTDCEVSISPNCCVIDEKK-PHFLTVSAVLK-----------KATDNTLSLLRQE 365

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +EI KG L+  L+   +  I   E   K V   +F  +EN
Sbjct: 366 LEIHKGELLENLHFASLEKIFIEERIYKEV---KFEQSEN 402


>gi|332520464|ref|ZP_08396926.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
 gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 184/336 (54%), Gaps = 30/336 (8%)

Query: 4   DNISNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           D+++N N   +E  + ++ +    +E +L YA   I ERA+P + DGFKPV RRI+H+M 
Sbjct: 7   DDLTNENLENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMK 66

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           +  LD G  + K A IVG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI 
Sbjct: 67  D--LDDGR-YNKVANIVGHTM-QYHPHGDASIADAMVQIGQKDL----LIDTQGNWGNIL 118

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++    ++   +    +++ +Y+    EPV  P  FP LLA G  
Sbjct: 119 TGDRAAASRYIEARISKFGLDVV--YNPKITEWQQSYDGRRKEPVNLPVMFPLLLAQGGE 176

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T I  HN  E+ EA++  +            + + PDFPT GI      +   
Sbjct: 177 GIAVGLSTKILPHNFIELIEASIKHLQGK--------RFTLVPDFPTAGI------ADFS 222

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G  G +VR R  + +V + +  + +TEIPY    S LI+ I +    K    ++ I
Sbjct: 223 NYNDGLRGGKVRVRAKISQVDKTT--LAITEIPYGTTTSSLIDSILKA-NDKGKIKIKKI 279

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            D +A +V I++   +  L PD  +++++  +  E+
Sbjct: 280 EDNTAAEVEILIHLPS-GLSPDKTIDALYAFTSCES 314


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 123/174 (70%), Gaps = 3/174 (1%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 1   DKDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLL 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+ + S+E L+++I GPDFPTGGII   ++ I+E+YR GRG  ++RA+  +E+       
Sbjct: 61  DHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKIRAKTHIEKKSNKD-I 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSL 320
           IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  E +R+V+  K  ++
Sbjct: 119 IVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAM 172


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 111/156 (71%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 5   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 65  FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 124

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            ++++ V F   +++ + EP V P+ FPNLL NG+S
Sbjct: 125 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSS 160


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 160/261 (61%), Gaps = 15/261 (5%)

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 1   IQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTEL 59

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 60  PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 119

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++T F +NM  L  G  P+V+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL
Sbjct: 120 ALQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGL 178

Query: 394 LIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL------EE 444
            IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  L      EE
Sbjct: 179 RIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEE 238

Query: 445 YQ----IKSELDNLLAEKEKI 461
           YQ    + +EL  +LA +EK+
Sbjct: 239 YQSLIKLIAELKEILANEEKV 259


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 175/329 (53%), Gaps = 34/329 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            E  +L Y    I+ERAIP + DG KPV RRI+  +  M       F K A +VGE + K
Sbjct: 12  FEYNFLEYTSYVIRERAIPAIDDGLKPVQRRILQTLFNME---DGRFHKVANLVGETM-K 67

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD S++ +LV LA     +  LI  QGNFGNI  GDSA+A RY E R++ +A+ +L
Sbjct: 68  LHPHGDASIFSALVNLAN----KGFLIERQGNFGNIFTGDSASAPRYIECRLSPLAKEVL 123

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              ++D  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+ +A  
Sbjct: 124 --FNKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELLQAQK 181

Query: 205 A-LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           A L+D          E+ + PDFP GG++       V  Y  G G  + RAR  + E+  
Sbjct: 182 AVLLDE---------EFTLYPDFPQGGLVD------VSGYEDGNGKIKCRAR--IRELNE 224

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            +  I++ EIPY      L + I +   A +I ++  I D +AE V I +    R +   
Sbjct: 225 KT--IIIDEIPYSTTTQSLTDSIEKAAKAGKIKII-SINDYTAEKVEIEI-KVARGIYAK 280

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVP 352
             +++++  +D E     N+ ++  G+ P
Sbjct: 281 DTIKALYAFTDCEVPISPNLTLIK-GKTP 308


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 102/133 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 188/355 (52%), Gaps = 33/355 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA   I ERA+P + DG KPV RRI++ M     D G    K A++ G+ +  LHPH
Sbjct: 47  YLDYASYVILERAVPHIEDGLKPVQRRILYTMHHW-FDNGR-MNKVAKVTGQTMA-LHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EA+++ +A+  L   +
Sbjct: 104 GDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A + 
Sbjct: 158 DKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIAHLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDFPTGG++  SR      Y  GR G ++++R  + ++   +  +
Sbjct: 218 GESFDLY--------PDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKL--DNRTL 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            +TE+P     S LIE I +     +I +  ++D+    A D+RI L      +  D  +
Sbjct: 262 SITELPCGKTTSSLIESILKANEKGKIKIKRIDDMTAAEA-DIRIHLAA---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           ++++  +D E     N  V+ M   P  + +  +L+      RE+L +  + R++
Sbjct: 318 DALYAFTDCEVSQSPNACVI-MDDKPVFLGVTDLLRYSAERTRELLKQELTIRLE 371


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 188/355 (52%), Gaps = 33/355 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA   I ERA+P + DG KPV RRI++ M     D G    K A++ G+ +  LHPH
Sbjct: 47  YLDYASYVILERAVPHIEDGLKPVQRRILYTMHHW-FDNGR-MNKVAKVTGQTMA-LHPH 103

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D+LV+L Q    +  LI  QGN+GNI  GD AAA RY EA+++ +A+  L   +
Sbjct: 104 GDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL--FN 157

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A + 
Sbjct: 158 DKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIAHLR 217

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                +         PDFPTGG++  SR      Y  GR G ++++R  + ++   +  +
Sbjct: 218 GESFDLY--------PDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKL--DNRTL 261

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            +TE+P     S LIE I +     +I +  ++D+    A D+RI L      +  D  +
Sbjct: 262 SITELPCGKTTSSLIESILKANEKGKIKIKRIDDMTAAEA-DIRIHLAA---GVSSDKTI 317

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           ++++  +D E     N  V+ M   P  + +  +L+      RE+L +  + R++
Sbjct: 318 DALYAFTDCEVSQSPNACVI-MDDKPVFLGVTDLLRYSAERTRELLKQELTIRLE 371


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 104/149 (69%), Gaps = 1/149 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI+  M E+GL      +K AR+VG+V+GK HPHGD +VY++LVRLAQ F    P
Sbjct: 32  KPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSAP 91

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           L+ G GNFG++D D  AA RYTE R+ +V+E  +L  +  + V F +T++   +EP V P
Sbjct: 92  LVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVLP 151

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++ PNLL NG+SGIAV +AT++  HN+ E
Sbjct: 152 ARVPNLLINGSSGIAVAVATNMAPHNLGE 180



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 12/228 (5%)

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           + +R+V+  K R  D   ++  ++  + +E  + +N NV  +G  P VMPL  +L E++ 
Sbjct: 204 DGMRVVIEIK-RGHDASTVLAELYKKTRLEVNYNVN-NVALVGNKPTVMPLRDMLDEFIK 261

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSL 423
            R + + RR+ F +     R  +++G      + D ++ IIR ++D P     +  +  L
Sbjct: 262 FRVDTIERRTRFMLGKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKKLREKHGL 321

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q DAIL + LR L  LE  ++ +EL +L  + E    LLN   +  + +  E +E K
Sbjct: 322 SEIQSDAILAMPLRRLTGLEADKLDAELKDLNGQIEYYQGLLNDKSKVIDVLIQEAQEAK 381

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             F++      RRTT  +   +D   ++     K+ I + +S RG+++
Sbjct: 382 TAFARE-----RRTTLEQTGPSD-GVIEDEGPPKDNI-ITLSERGYVK 422


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 28/314 (8%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RAIP + DG KPV RR++++M  M       + K A +VG  + + HPHGD S+Y +
Sbjct: 62  ILNRAIPHINDGLKPVQRRVLYSMRRME---DGRYNKVANVVGHTM-QFHPHGDSSIYGA 117

Query: 98  LVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LV L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +    +    +++ 
Sbjct: 118 LVGLGQKNI----LIDTQGNWGNILTGDPAAAARYIEARLSRFA--LDTVFNPKTTEWKP 171

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
           +Y+  + EPV  P KFP LLA G+ GI  G+ T I  HN  E+ +A +  +         
Sbjct: 172 SYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNELIDATILYLQGK------ 225

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
             E+ + PDFPTGG+I  SR      Y  G  G +V  R  + +       +++  +PY 
Sbjct: 226 --EFCLYPDFPTGGMIDVSR------YNDGERGGKVMMRVNITKSADNK-SLIINNVPYG 276

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           +  ++LIE I +     +I  ++ I D +AE V I+L  + ++   D  +++++  +D +
Sbjct: 277 LDTAKLIESIIQANEKGKIN-IKKIDDNTAEGVEIILHLEAKT-SLDKTIDALYAFTDCQ 334

Query: 337 TRFPLNMNVLSMGR 350
           T++  N  V+   +
Sbjct: 335 TQYSPNCCVIDNNK 348


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/131 (53%), Positives = 102/131 (77%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+Y+++VR+AQ F  RYPL++GQGNFG++DGD AAA RYTEAR+T++   +L+ +++D
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+L  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 211 EISIEKLLEYI 221
           +I+I +L+E I
Sbjct: 121 DITINELMEDI 131


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 11  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++
Sbjct: 71  YHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKI 124


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 11  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++
Sbjct: 71  YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKI 124


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 11  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++
Sbjct: 71  YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKI 124


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 165/311 (53%), Gaps = 34/311 (10%)

Query: 130 RYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM+
Sbjct: 2   RYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMS 61

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GRG
Sbjct: 62  TQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGRG 120

Query: 249 GFRVRARWCVE-----------------------EVGR-------GSWCIVVTEIPYQVQ 278
              +R R+ +E                       E  R           +V+TE+PY V 
Sbjct: 121 RVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGVN 180

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
           KS +++ IA++I  K +  +  +RDES    +R+VL  + R  D   ++  +   ++++ 
Sbjct: 181 KSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLR-RDADAHTILTLLLKHTNLQV 239

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
             P+++  L  G  P    L  +L  W+A R   L R  +        R  +L+GLL A 
Sbjct: 240 YIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAV 299

Query: 398 LNIDEIIAIIR 408
             +D+++  +R
Sbjct: 300 SLMDDVVKTVR 310


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 94/122 (77%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 174/349 (49%), Gaps = 13/349 (3%)

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I IIRNED+PKPV+++RF L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+
Sbjct: 1   MIHIIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEIN 60

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L+S  Q    I        E+ + +   G  R       +A +A  +  ++  EP+TV
Sbjct: 61  VILDSDVQLKKLIK------DELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTV 114

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S +GWIR+ K H VD S + ++EGD L  A+   +T ++  L ++G+AY+     L S
Sbjct: 115 VLSEKGWIRAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPS 174

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG+GE +                  D+    ++ SS G  FI     +    + GK  +
Sbjct: 175 ARGNGEPLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMI 234

Query: 643 KVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            ++   +   +  +  V  D +  V     LL  +  ++PE+ +GKG +L       ++ 
Sbjct: 235 HLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLAT 294

Query: 700 ---VICFKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
              V    +    T +  +G R+ + S  DL  +L  RG  G L+P+ +
Sbjct: 295 ERLVAVIAVASSHTLLLYSGERTMHLSFKDLEAYLDTRGSRGQLLPRSW 343


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/131 (54%), Positives = 98/131 (74%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+YD++VR+ Q F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+ +++D
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L L  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 211 EISIEKLLEYI 221
           +++I +L+E I
Sbjct: 121 DVTIAELMEDI 131


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/133 (52%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           +F+D Y+  + EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|332293168|ref|YP_004431777.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 179/324 (55%), Gaps = 31/324 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  VS  F  E+ +L YA   I ERA+P + DGFKPV RRI+HA+ E  LD G  + K
Sbjct: 29  ETITRVSGMF--EDWFLDYASYVILERAVPSIEDGFKPVQRRIMHALKE--LDDG-RYNK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A +VG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY E
Sbjct: 84  VANVVGHTM-QYHPHGDASIGDAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T+ A  ++   +    +++ +Y+    EP+  P  FP LLA+G  GIAVG++T +  
Sbjct: 139 ARLTKFALDVV--YNPKITEWQASYDGRKKEPINLPVMFPMLLASGAEGIAVGLSTKVLP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A++  + +         ++ + PDFPT GI      +    Y+ G  G +VR
Sbjct: 197 HNFIELIDASIKHLKDK--------KFTLYPDFPTAGI------ADFTDYKDGMRGGKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + +  + +  +V+TE+P+    + LI+ I +     +I + +   + SA    +V 
Sbjct: 243 CRARISQQDKNT--LVITELPFGQTTTSLIDSILKANDKGKIKIKKIEDNTSANVEILVH 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMET 337
            P    + PD  +++++  ++ ET
Sbjct: 301 LPG--GISPDKTIDALYAFTNCET 322


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 106/145 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 2   IQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYDA 61

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 62  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWN 121

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           +++ + EP V P+ FPNLL NG+SG
Sbjct: 122 FDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/94 (75%), Positives = 83/94 (88%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTEAR
Sbjct: 2   ARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEAR 61

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           MT+VA L+L+G++E+A+DFR TYNEED EPVV P
Sbjct: 62  MTEVAALLLEGINENAIDFRLTYNEEDEEPVVLP 95


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 11  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++
Sbjct: 71  YHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKI 124


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 94/122 (77%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EI 199
           E+
Sbjct: 121 EV 122


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 106/145 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 3   IQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDA 62

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 63  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 122

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           +++ + EP V P+ FPNLL NG+SG
Sbjct: 123 FDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 93/114 (81%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++
Sbjct: 78  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKI 131


>gi|332297527|ref|YP_004439449.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
 gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 177/338 (52%), Gaps = 32/338 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            ++ +L YA   I++RAIPD+ DG KPV RRI+H + E+       F K A +VG+ + K
Sbjct: 8   FDKNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFEVD---DGKFNKVANVVGQCM-K 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELIL 144
            HPHGD S+  +LV LA     +   I  QGNFGN+  GD A+A RY E R+  +A  +L
Sbjct: 64  YHPHGDASIGGALVVLAN----KELFIEKQGNFGNLYTGDGASAARYIECRLKPLARDVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              +     +  +Y+  + EPVVF +K P  L  G  GIAVGM+T+I SHNV+E+ +A +
Sbjct: 120 --YNPAITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVIQAEI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A +       EK   Y   PD  TGG+I       V  Y+ G G    RA+    +  R 
Sbjct: 178 ACLKG-----EKFALY---PDCFTGGLI------DVSDYQDGLGKITTRAKLDTSDPKR- 222

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              IVV E+P+     RL E I +     ++  +  + D +A+ V I +    R +  + 
Sbjct: 223 ---IVVRELPFGSNSERLTESIVKAAKNGKLK-VASVTDYTADKVEIEI-KLQRGVYAED 277

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ++ +++  ++ E     N+ V+    +PQVM +  +++
Sbjct: 278 VVSALYAFTECEQSISCNLLVIR-DNMPQVMTVSDVIR 314


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 234/451 (51%), Gaps = 46/451 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  + K A IVG  + + HPH
Sbjct: 47  FLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD--LDDGR-YNKVANIVGHTM-QYHPH 102

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +L   +
Sbjct: 103 GDASIGDAMVQVGQKDL----LIDMQGNWGNILTGDRAAASRYIEARLSKFALEVL--FN 156

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D++ +Y+    EP+  P +FP LLA G  GIAVG++T I  HN  E+ +A++  + 
Sbjct: 157 PKITDWQLSYDGRRKEPINLPVRFPLLLAQGAEGIAVGLSTRILPHNFIELIDASIKHLQ 216

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + I PDF TGG      E+ + +Y  G  G +VR R  + +  + +  +
Sbjct: 217 GK--------RFKIYPDFQTGG------EADISNYNDGLRGGKVRVRAKISQQDKNT--L 260

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLME 327
           +++EIPY    + LI+ I +    K    ++ I D +A +V I V  P N S  PD  ++
Sbjct: 261 LISEIPYGTTTTTLIDSILKA-NDKGKIKIKKIEDNTAANVEILVHLPPNIS--PDKTID 317

Query: 328 SIFMLSDMETRF-PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           +++  +  E    PL+  +++    P+ + +  IL+    H   +L      ++  ++ +
Sbjct: 318 ALYAFTRCEESISPLSCIIIN--NRPEFIGVSEILRRSTDHTVSLLKSDLEIKLDELESQ 375

Query: 387 VEI--LKGLLIA---YLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                L+ + I    Y +I+E      +I  I    KP    + R ++TE  +  +  +R
Sbjct: 376 WHYASLERIFIENRIYRDIEEEETWEGVIQAIDKGLKPHTAHLKR-AVTEEDIVRLTEIR 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           ++ + K +  + + ++D L  + E++   L+
Sbjct: 435 IKRISKFDIDKAQQKIDALEDQIEEVKHHLD 465


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 11  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 70

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++
Sbjct: 71  YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKI 124


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 106/145 (73%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+Y++
Sbjct: 5   IQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYNA 64

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 65  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWN 124

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           +++ + EP V P+ FPNLL NG+SG
Sbjct: 125 FDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 95/121 (78%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 T 137
            
Sbjct: 128 A 128


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 93/114 (81%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++
Sbjct: 78  YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKI 131


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 105/145 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 3   IQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDA 62

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  A  RYTEAR++++A  +LQ ++++ V F   
Sbjct: 63  MVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFAWN 122

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           +++ + EP V P+ FPNLL NG+SG
Sbjct: 123 FDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 95/122 (77%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FP 169
            P
Sbjct: 121 MP 122


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 100/142 (70%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+     
Sbjct: 15  LAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA RY
Sbjct: 75  FKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRY 134

Query: 132 TEARMTQVAELILQGVDEDAVD 153
           TEAR++++A  +L+ +D+D VD
Sbjct: 135 TEARLSKLAGELLRDIDKDTVD 156


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 177/324 (54%), Gaps = 31/324 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  VS  F  E+ +L YA   I ERA+P + DGFKPV RRI+HA+ E  LD G  + K
Sbjct: 29  ETITRVSGMF--EDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKE--LDDGR-YNK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A +VG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY E
Sbjct: 84  VANVVGHTM-QYHPHGDASIGDAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++   +    D++ +Y+    EP+  P  FP LLA G  GIAVG++T +  
Sbjct: 139 ARLSKFALDVV--YNPKITDWQASYDGRKKEPINLPVMFPLLLAQGAEGIAVGLSTKVMP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A++  +        K   + I PDFPT GI      +    Y+ G  G ++R
Sbjct: 197 HNFIELIDASIKHL--------KGKRFTIYPDFPTAGI------ADFTDYKDGLRGGKIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + +  + +  +V+TE+P+    + LI+ I +     +I + +   + SA    +V 
Sbjct: 243 CRARMSQQDKNT--LVITELPFGQTTTSLIDSILKANDKGKIKIKKIEDNTSANVEILVH 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMET 337
            P    + PD  +++++  ++ ET
Sbjct: 301 LPS--GISPDKTIDALYAFTNCET 322


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 180/364 (49%), Gaps = 34/364 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA   I +RAIP++ DG KPV RRI++ +  M         K A + G+ +  
Sbjct: 8   MQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLWLM---HDGKLHKVANVAGQTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++L+ +A     +  L+  QGNFGN+  GD AAA RY E R+T +A+  L
Sbjct: 64  LHPHGDAPITEALINIAN----KGYLLDQQGNFGNLFTGDPAAAARYIETRLTPLAKETL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D      +Y+    EP   P+K P +L  G  GIAVGM+T I  HN  E+ EA +
Sbjct: 120 --FNADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLELLEAEI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+++    S        I PDFPTGGI+  S       Y  G+G  R+RA+  V    R 
Sbjct: 178 AILEGKPFS--------ILPDFPTGGIMDAS------DYNKGKGKVRLRAKIEV----RD 219

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPD 323
           +  +V+TEI Y      LI  I E     +I  ++ I D +AE V I +  P+ +     
Sbjct: 220 AKSLVITEICYGTTTESLIRSIDEAAKKGKIK-IDAINDYTAEKVEIEIKLPRGQYAQD- 277

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L+E+++  ++ +      + V+     P    +D IL+      +E L R        +
Sbjct: 278 -LLEALYAYTECQVTLHSQIVVIK-DNYPWETDVDSILRLHTEKLQEYLQRELELERDHL 335

Query: 384 DRRV 387
           + ++
Sbjct: 336 NEKI 339


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 101/144 (70%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +K A+I G+  G 
Sbjct: 4   MKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDTSGD 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+  +Y +LVR+AQ +V RY LI GQGNFG+IDGD  AA RY+EAR+T  +  +++
Sbjct: 64  YHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQLMK 123

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFP 169
            +D++ VD    Y+E   EPVVFP
Sbjct: 124 DLDKETVDHVPNYDETKKEPVVFP 147


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/106 (65%), Positives = 87/106 (82%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH
Sbjct: 2   YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           GD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 62  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 100/132 (75%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/195 (43%), Positives = 131/195 (67%), Gaps = 1/195 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + EPVV PS+FPNLL NG +GIA GMAT+IP H + E+ E  LA+ +
Sbjct: 1   KDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NPEI+ ++L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NPEITNQELMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +
Sbjct: 120 IVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNN 179

Query: 329 IFMLSDMETRFPLNM 343
           ++  + ++T F +N+
Sbjct: 180 LYKQTALQTSFGINL 194


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYD 114


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 103/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G  D   
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNIL 172


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 106/160 (66%), Gaps = 2/160 (1%)

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 2   LEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLAY 61

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GS 265
           ID+  ISIE L+ +I GPDFPT  II   R  I E+YR GRG   +RAR  VE   + G 
Sbjct: 62  IDDENISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYLRARAEVESDAKTGR 120

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES
Sbjct: 121 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 160


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 34/323 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +E +L YA   I ERA+P L DG KPV RRI+H+M +  LD G  + K A IVG  + + 
Sbjct: 42  KEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKD--LDDGR-YNKVANIVGHTM-QY 97

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q    +  LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 98  HPHGDASIADAMVQIGQ----KELLIDMQGNWGNILTGDRAAASRYIEARLSKFALDVV- 152

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +     ++ +Y+    EP+  P KFP LLA G  GIAVG++T +  HN  E+ +A++ 
Sbjct: 153 -FNSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAEGIAVGLSTKVLPHNFIELIDASMK 211

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +        K   + I PDF TGGI      +   +Y  G  G +VR R  + ++ + +
Sbjct: 212 YL--------KGRSFKILPDFITGGI------ADFTNYNDGVRGGKVRVRARIAQLDKKT 257

Query: 266 WCIVVTEIPYQVQKSRLIEKI--AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
             +V+ EIP+    + LI+ I  A      +I  +ED  + +AE   +V  P N S  PD
Sbjct: 258 --LVINEIPFGTTTTTLIDSIIKANEKGKIKIKKIED--NTAAEVEILVHLPPNVS--PD 311

Query: 324 LLMESIFMLSDMETRF-PLNMNV 345
             +++++  +  E    PL+  +
Sbjct: 312 KTIDALYAFTSCENSISPLSCTI 334


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 131/555 (23%), Positives = 260/555 (46%), Gaps = 28/555 (5%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L++ ++ +A S +    +P + DG  PV+R+++ A+    +     + K  R    +  
Sbjct: 9   VLQDEFIGFA-SEVIVNNLPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR-ASSMSM 65

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA--AAYRYTEARMTQVAEL 142
             +  GD  +  ++  +A   V +Y  +  +G+FG+    +   A+ RY E R+++ +  
Sbjct: 66  VYYIFGDIPLTTAMKNMANNGV-KYFYLDPKGSFGDKQSKTGKGASPRYIECRLSKYSMD 124

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  HN+ + C++
Sbjct: 125 ILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGHNLIDTCDS 184

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +  I   +  I+K ++ I  PD P GG ++  + +  + Y+ G G F +  ++ +++  
Sbjct: 185 IINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLGKYKMKQCD 242

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           + +    + EIPY+     +  K+ E     + K I  + D  D     + I L  KN +
Sbjct: 243 KYN-IFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDIYL-KKNTN 300

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           L     +  +   +  E++FP N  +L + G+ P +M L  I   W+ HR   +     +
Sbjct: 301 LKQ--FISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIKNEMLY 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            ++     +  L GL I    +D+ I IIR+    K     ++  F L + Q + I  +R
Sbjct: 359 DVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEYIATIR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K     RR
Sbjct: 419 LVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP----RR 474

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
                E   AD +   + ++E    T+V++ + +I+  +  S    +   K+ D +    
Sbjct: 475 TEIIYEDEIADVS--HEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDKILQFH 529

Query: 556 HAHTTDRILLLSTDG 570
             +  D +LL +  G
Sbjct: 530 QCNNKDDLLLFTNKG 544


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LLE +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLEALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/124 (58%), Positives = 94/124 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y +S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPH
Sbjct: 2   YLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++
Sbjct: 62  GDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQ 121

Query: 150 DAVD 153
             V+
Sbjct: 122 GTVE 125


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 60

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE 
Sbjct: 61  RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEM 120

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E   L  E++++  +L S ++  N +  E++   + +        RR+   E   A
Sbjct: 121 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA 175

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS 532
            KA  +  M+  EP+T+V+S  GW+RS
Sbjct: 176 -KAMSEHDMLPSEPVTIVLSQMGWVRS 201


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/114 (58%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DTY+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYD 114


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIEQIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRSGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSA A RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 160/686 (23%), Positives = 310/686 (45%), Gaps = 48/686 (6%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L++ ++ +A S +    +P + DG  PV+R+++ A+    +     + K  R    +  
Sbjct: 9   VLQDEFIGFA-SEVIVNNLPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR-ASSMSM 65

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA--AAYRYTEARMTQVAEL 142
             +  GD  +  ++  +A   V +Y  +  +G+FG+    +   A+ RY E R+++ +  
Sbjct: 66  VYYIFGDIPLTTAMKNMANNGV-KYFYLDPKGSFGDKQSKTGKGASPRYIECRLSKYSMD 124

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  HN+ + C++
Sbjct: 125 ILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGHNLIDTCDS 184

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +  I   +  I+K ++ I  PD P GG ++  + +  + Y+ G G F +  ++ +++  
Sbjct: 185 IINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLGKYKMKQCD 242

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           + +    + EIPY+     +  K+ E       K I  + D  D     + I L  KN +
Sbjct: 243 KYN-IFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDIYL-KKNTN 300

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           L     +  +      E++FP N  +L + G+ P +M L  I   W+ HR   +     +
Sbjct: 301 LKQ--FISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIKNEMLY 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435
            ++     +  L GL I    +D+ I IIR+    K     ++  F L + Q + I  +R
Sbjct: 359 DVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEYIATIR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K     RR
Sbjct: 419 LVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP----RR 474

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
                E   AD +   + ++E    T+V++ + +I+  +  S    +   K+ D +    
Sbjct: 475 TEIIYEDEIADVS--HEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDKILQFH 529

Query: 556 HAHTTDRILLLSTDG-----KAYTL----PA--GNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             +  D +LL +  G     K Y L    P+  G+ L     GE +Q     ++ + I  
Sbjct: 530 QCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNL-LGEYLQ-----DNEKVIYI 583

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
           +   D    ++ V   GN   ++  E  +   +       +++  +  +  +T D  V +
Sbjct: 584 STTKDYKGSVIAVFENGNVARIDLQEYKSKQNRQIPMSAYNTDSNLISIAVITTDVDVLL 643

Query: 664 VGENRKLLIFSIDQI-PEMSRG-KGV 687
           V +  K LI +  Q+ P  SR  KGV
Sbjct: 644 VSQEGKALIVNTSQLRPTKSRNTKGV 669


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 171/290 (58%), Gaps = 5/290 (1%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P  S+EKL+EYI GPDFPTGGI+ + +  I ++Y  GRG   +RA+  +E
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRAKTKIE 59

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++    + 
Sbjct: 60  PLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKD 119

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++ + ++  +F  ++++  +  NM  +     PQ + L  IL+ ++ HR+ V+  R  F 
Sbjct: 120 VNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIINRCQFE 178

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRL 436
           +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ TE Q +AI+ L+L
Sbjct: 179 LDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAIVTLQL 238

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
             L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +
Sbjct: 239 YRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY 288


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 111/162 (68%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/411 (31%), Positives = 206/411 (50%), Gaps = 63/411 (15%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310
           +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D +R
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IV+  K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRRE
Sbjct: 61  IVIECK-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRRE 118

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------- 420
           V+ RR+ F ++    R  IL+GL +A  NIDEII +IR+   P   K  +++R       
Sbjct: 119 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNV 178

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL+LRL  L  LE  +I  E   
Sbjct: 179 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 238

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + 
Sbjct: 239 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEE 290

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+++        + +      SA   KE D ++  L A+T D ILL
Sbjct: 291 LIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILL 350

Query: 566 LSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
            ST GK Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 351 FSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSKD 401


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 93/114 (81%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYD 114


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       +D
Sbjct: 1   EECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALD 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+LLE +I    GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALIKLIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVSVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETS 160


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ED+VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LL+ +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETS 160


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 89/116 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY ++VR+AQPF  RY LI GQGNFG++DGD+ AA RYT
Sbjct: 6   KKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYT 65

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           E R+++ A  ++  +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMA
Sbjct: 66  EIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMA 121


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 100/134 (74%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIVGEV+GK HPHGD S+
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTEARM+++A  +L+ +++D +D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 155 RDTYNEEDSEPVVF 168
           +  Y++ ++E   F
Sbjct: 121 QRNYDDNENETSSF 134


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 29/326 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           VEE      +     E +L YA   I ERA+P + DGFKPV RRI+H+M +  LD G  +
Sbjct: 30  VEETETITRVTGMYREWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD--LDDG-RY 86

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRY 131
            K A IVG  + + HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY
Sbjct: 87  NKVANIVGHTM-QYHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            EAR+++    ++   +     ++ +Y+    EP+  P  FP LLA G  GIAVG++T +
Sbjct: 142 IEARISKFGLDVV--YNPKITKWQASYDGRRKEPINLPVMFPLLLAQGAEGIAVGLSTKV 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+ +A++  +            + + PDFPTGG++       V  Y  G  G +
Sbjct: 200 LPHNFLELIDASVKYLQGK--------RFTLFPDFPTGGMVD------VTDYNDGLRGGK 245

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +++R  + +  + +  +V+ EIP+      LI+ I +    K    ++ I D +A DV I
Sbjct: 246 IKSRARILQHDKNT--LVIREIPFGTNTGSLIDSILKA-NDKGKIKIKKIEDNTAADVEI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMET 337
           ++      L PD  +++++  ++ ET
Sbjct: 303 LIHIA-AGLSPDKTIDALYAFTNCET 327


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 91/118 (77%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGMAT 122


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 104/136 (76%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 3   DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDE 149
           ARM+++A  +L+ +++
Sbjct: 123 ARMSKIALEMLRDINK 138


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E++VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+       ++
Sbjct: 1   EESVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLE 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +P+ S E+LLE +I    GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPDASREELLESLIERVPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETS 160


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYD 114


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 91/118 (77%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 4   YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 63

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 64  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/118 (60%), Positives = 88/118 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE
Sbjct: 11  KSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 70

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           AR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 71  ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 128


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF   Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYD 114


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 91/118 (77%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +L+ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/129 (52%), Positives = 92/129 (71%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GLDF   FKKSARIVG+VIGK HPHGD SVYD+++ LAQ +    PL+S  GN G+ID 
Sbjct: 7   LGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGNIGSIDD 66

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE ++ ++A  I+  + +  V F   +++ ++EP+V PS FPNLL NG+ GI
Sbjct: 67  DKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGI 126

Query: 184 AVGMATSIP 192
           A+GMAT +P
Sbjct: 127 AIGMATEMP 135


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 90/118 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 92/114 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 97/140 (69%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+  G 
Sbjct: 5   MKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTSGD 64

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  +++
Sbjct: 65  YHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQLME 124

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            +D++ V+    YNE   EP
Sbjct: 125 DLDKNTVEMVPNYNETKKEP 144


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 173/334 (51%), Gaps = 34/334 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N KA  L  + +  +L YA   I +RA+P L DG KPV RRI+H++ E  LD G  + K 
Sbjct: 33  NAKA-PLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRIMHSLKE--LDDGR-YNKV 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEA 134
           A +VG  + + HPHGD S+Y ++V + Q    R  LI  QGN+GN + GD AAA RY EA
Sbjct: 89  ANVVGHSM-RYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTLTGDGAAAARYIEA 143

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++  A  ++   +     ++ +Y+  + EP   P KFP LL+ G  GIAVG+A  I  H
Sbjct: 144 RLSPFARDVV--FNPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAEGIAVGLACKILPH 201

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  EI +AA+  ++  E  +         PDF TGG+      +   +Y  G  G RV  
Sbjct: 202 NFNEIIDAAIYHLNGDEFELY--------PDFETGGV------ADFTNYNDGLRGGRVLV 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI--AELIIAKRIPLLEDIRDESAEDVRIV 312
           R   + V +  + IV+ EIP+      LI+ I  A      +I  +ED   E AE + I 
Sbjct: 248 RAVFDIVSK--YQIVIREIPFGCTTGSLIDSILSANSKGKIKIKKIEDNTSEKAE-ILIT 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           L P +   D    ++++++ +D +     N  ++
Sbjct: 305 LPPGS---DAQATIDALYVFTDCQVSIAPNACII 335


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/109 (59%), Positives = 90/109 (82%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 91/114 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHR +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 114


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/118 (57%), Positives = 90/118 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/118 (57%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ IGK HPHGD +VYD +VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 4   YVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 63

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 64  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 129/198 (65%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++DTY   + EPVV PS+FPNLL NG +GIA GMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N +I+I +++ +I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NKDITIPEVMAFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++  
Sbjct: 120 LVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNH 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +NM  L
Sbjct: 180 LYKQTALQTSFGINMLAL 197


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 6/162 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       + 
Sbjct: 1   EECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALA 60

Query: 209 NPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+LLE ++    GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALLTIIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE++
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETS 160


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/100 (66%), Positives = 83/100 (83%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 81/106 (76%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +KK AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           D +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE R+
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRL 106


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   FVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/101 (64%), Positives = 84/101 (83%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 4   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 64  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 104


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/118 (56%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 87/108 (80%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11  VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AA
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAA 118


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 101/143 (70%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 89/118 (75%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+ + K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 89/115 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 88/118 (74%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+   K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 5   YVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 64

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 65  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/119 (56%), Positives = 90/119 (75%), Gaps = 1/119 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 67

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 126


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 104/155 (67%), Gaps = 5/155 (3%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +A    ++N +   E+ L  ++    GPDFPT G+IV S +   ++
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADA 119

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           Y+ GRG  R+R    VEE  RG   +V+TE+PYQV
Sbjct: 120 YKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQV 154


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/95 (65%), Positives = 81/95 (85%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 95


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/119 (56%), Positives = 90/119 (75%), Gaps = 1/119 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 67

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 126


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/127 (54%), Positives = 94/127 (74%), Gaps = 5/127 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 3   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 63  VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 122

Query: 138 QVAELIL 144
           + +EL+L
Sbjct: 123 KYSELLL 129


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 87/114 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 8   YVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 67

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           TE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 68  TEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 121


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/107 (60%), Positives = 81/107 (75%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +
Sbjct: 1   GKYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEM 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 61  LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRII+AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ 
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 114 GQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           GQGN+G  D   S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ 
Sbjct: 61  GQGNWGAPDDPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARL 120

Query: 173 PNLLANGTSGIAVG 186
           P++L NG +GIAVG
Sbjct: 121 PHILLNGITGIAVG 134


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/127 (54%), Positives = 93/127 (73%), Gaps = 5/127 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 1   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 60

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 61  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 120

Query: 138 QVAELIL 144
           + +EL+L
Sbjct: 121 KYSELLL 127


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 97/136 (71%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ +
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 163 SEPVVFPSKFPNLLAN 178
            EP V P+ FPNLL N
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/114 (55%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD  VYD++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 89/119 (74%), Gaps = 1/119 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 67

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 68  HPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 126


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 87/115 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G+GNFG+IDGD
Sbjct: 3   GNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDGD 62

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           SAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG
Sbjct: 63  SAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 235/481 (48%), Gaps = 79/481 (16%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            ++ ++ YA   I++RAIPDL DG KPV RRI+H +    +D G    K A +VG+ + K
Sbjct: 8   FDKNFIEYASYVIRDRAIPDLEDGLKPVQRRIMHTL--FNIDDGR-MHKVASVVGDCM-K 63

Query: 86  LHPHGDQSVYDSLVRLAQP--FVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAEL 142
            HPHGD S+  +LV LA    F+QR      QGNFGN+  GD+A+A RY E  +  +A+ 
Sbjct: 64  FHPHGDASIGAALVVLANKEIFIQR------QGNFGNLYTGDTASASRYIECCVHPLAKK 117

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
            L   + +  ++  +Y+    EPV F +K P +L  G  GIAVGM+T I  +N++E+ +A
Sbjct: 118 FL--YNPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEVLDA 175

Query: 203 AL-ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            + AL   P         + I PD PTGG++       V +Y  G G    RA++ + + 
Sbjct: 176 EIKALRGEP---------FEIYPDSPTGGLMD------VSNYNDGNGKIITRAKFDLSDE 220

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSL 320
            +    IV+TE+P +     L++ I     A +I  +  + D + +   I +  P  R +
Sbjct: 221 KK----IVITELPLETTSKDLLDSIDAAYKAGKIK-ISSVEDFTTDHCNIEIKLP--RGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-----------LDGILKEWLAHRR 369
               + ++++  +  E      M V+    +P  M            L GI+K+ L   R
Sbjct: 274 YSKDVEKALYAYTSCEKSIACQMLVIK-DNMPVAMTATEIIKYYAKKLTGIIKDELEFER 332

Query: 370 ----EVLFRRSSFRM---QAIDRRVEILKGLLIAYLNI--------DEIIAIIRNEDKPK 414
               E L +R+  R+   + I + +E +K        +        DE+I  + +ED  K
Sbjct: 333 GSLTEELHQRTLERIFIEERIYKSIEQMKTAESVNKAVKDGFVPFKDELIRDVTDEDVEK 392

Query: 415 ----PV-MVSRFSLTEN--QVDAILNLRL----RSLRKLEEYQIKSELDNLLAEKEKIDS 463
               P+  +S F + +N  QV AI N RL    R L+ L +  ++  LD +L E +K  +
Sbjct: 393 LLKIPIRRISLFDINKNRDQVKAI-NERLKEIARRLKHLTDCAVEY-LDGILDELKKFSA 450

Query: 464 L 464
           L
Sbjct: 451 L 451


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 88/115 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            GQGNFG++DGDSAAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 82/119 (68%), Gaps = 9/119 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +EE VK+          YL YA+S I  RAIPD+RDG KPV RRI++AM E  +     +
Sbjct: 9   IEEEVKSA---------YLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPY 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KKSAR VG VI K HPHGD SVYD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 60  KKSARTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRY 118


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++I
Sbjct: 120 DGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 81/105 (77%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
           T   RAIPD+RDGFKPVHRRI++AMS+ G D G  +KK+A IVGEVIGK HPHGD +VYD
Sbjct: 3   TFISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYD 62

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           S+VR+AQ F     L+ G GNFG++ GD AA+ RYTEAR+  V++
Sbjct: 63  SMVRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARLQGVSQ 107


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/95 (64%), Positives = 78/95 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 4   RALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVR 63

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +AQPF  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 64  MAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 25/227 (11%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  LHP
Sbjct: 11  HFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGRTMA-LHP 66

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGV 147
           HGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A   L   
Sbjct: 67  HGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLARETL--F 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+ +A +A++
Sbjct: 121 NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELLKAQIAIL 180

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++         ++ + PDFP+GG++  S       Y+ G G   +RA
Sbjct: 181 NDK--------KFTVFPDFPSGGLMDPSE------YQDGLGSITLRA 213


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 25/227 (11%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  LHP
Sbjct: 11  HFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGRTMA-LHP 66

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGV 147
           HGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A   L   
Sbjct: 67  HGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLARETL--F 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+ +A +A++
Sbjct: 121 NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELLKAQIAIL 180

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++         ++ + PDFP+GG++  S       Y+ G G   +RA
Sbjct: 181 NDK--------KFTVFPDFPSGGLMDPSE------YQDGLGSITLRA 213


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 5/127 (3%)

Query: 23  RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           R AL E     YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 7   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R++
Sbjct: 67  VGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126

Query: 138 QVAELIL 144
           + +EL+L
Sbjct: 127 KYSELLL 133


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 25/227 (11%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  LHP
Sbjct: 11  HFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGRTMA-LHP 66

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGV 147
           HGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A   L   
Sbjct: 67  HGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLARETL--F 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+ +A +A++
Sbjct: 121 NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELLKAQIAIL 180

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++         ++ + PDFP+GG++  S       Y+ G G   +RA
Sbjct: 181 NDK--------KFTVFPDFPSGGLMDPSE------YQDGLGSITLRA 213


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 168/325 (51%), Gaps = 42/325 (12%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A + G+ +   HPHGD  + ++LV +A     R  L+  QGNFGNI  GD AAA RY 
Sbjct: 8   KVANVAGQTMA-YHPHGDAPITEALVNMAN----RGYLLDQQGNFGNIFTGDPAAAARYI 62

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+  +A+  L   + D   +  +Y+    EP+V P+K P LL  G +GIAVGM+TSI 
Sbjct: 63  ETRLAALAKETL--FNPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGMSTSIL 120

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN +E+ EA +A++++ E S        + PDFPTGGI+  S       Y  GRG  ++
Sbjct: 121 PHNFEELLEAEIAILEDREFS--------VFPDFPTGGIMDAS------DYNQGRGKVKL 166

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRI 311
           RA+  V    R    +V+TEI Y      LI  I E   AKR  + ++ I D +AE V I
Sbjct: 167 RAKIEV----RDPKTLVITEICYGTTTESLIRSIDE--AAKRGKIKIDAINDYTAEKVEI 220

Query: 312 -VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK-------E 363
            +  P+ +  +   L+++++  ++ E      + V+    +P    +D ILK       E
Sbjct: 221 EIKLPRGQYAEE--LIQALYAYTECEVAIHSQIVVIK-DDLPWETDVDSILKLHAEKLQE 277

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVE 388
           +L  R E+   R  F+ +   + +E
Sbjct: 278 YL--RIELELERDRFKEKIFAKTLE 300


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELMEIKERFN 261


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 49/339 (14%)

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+
Sbjct: 13  IINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELV 72

Query: 291 IAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
             KR+  +  +RDES +D +RIV+  K  ++  ++++ +++  + ++  F +NM  L  G
Sbjct: 73  KDKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHG 131

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
           + P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR 
Sbjct: 132 Q-PKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRR 190

Query: 410 EDKP---KPVMVSR----------------------------------FSLTENQVDAIL 432
              P   K  ++SR                                  + LTE Q  AIL
Sbjct: 191 APTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAIL 250

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  +++ F      
Sbjct: 251 DLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQF------ 304

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           G  R T    + AD     + +I +E + V +S++G+++
Sbjct: 305 GDERRTEITANSADINI--EDLISQENVVVTLSHQGYVK 341


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 7   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 66

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 67  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 125

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 126 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 185

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 186 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 245

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 246 EIIREELTEIKERFN 260


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 63/506 (12%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIPYQV K+ +
Sbjct: 1   GPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATM 59

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + ++T F  N
Sbjct: 60  IEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCN 119

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L+ G+  Q+  LD +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE
Sbjct: 120 MVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDE 178

Query: 403 IIAIIRNEDKPKP----VMVSR-------------------------FSLTENQVDAILN 433
           +I +IR    P+     +M  R                         ++L+E Q  AIL 
Sbjct: 179 VIRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILE 238

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ F       
Sbjct: 239 LRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTP---- 294

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545
            RRT   E+         + +I +E + V +S+ G+I        R+ +      S +  
Sbjct: 295 -RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTT 350

Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           ++ D +      +T   +L  S+ G     K + LP G   S    G+A+  ++ L   +
Sbjct: 351 RDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS---RGKALINMLPLEPGE 407

Query: 601 DIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            I T               ++  +++G     + S+ +   R GK  +K+  E    L V
Sbjct: 408 RITTILPLPEDEANWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSV 467

Query: 655 KVTG--DHVAVVGENRKLLIFSIDQI 678
           +     D V +     + + FS+D +
Sbjct: 468 ETCTERDDVLLTTALGQCIRFSVDDV 493


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 6   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 65

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 66  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 124

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 125 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 184

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 185 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 244

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 245 EIIREELTEIKERFN 259


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 6   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 65

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 66  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 124

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 125 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 184

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 185 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 244

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 245 EIIREELTEIKERFN 259


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 211/480 (43%), Gaps = 34/480 (7%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y  +   +R++PDL DG KPV RRI+ + S++       F+KSAR+ G  +G  HPHG+ 
Sbjct: 37  YGTTVNLDRSVPDLYDGLKPVQRRILWSASQVC---RTQFEKSARLTGHCMGAYHPHGNS 93

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG--VDED 150
           ++Y + V + Q      P + G+GNFG++  D AAA RYT  R++   +       ++ +
Sbjct: 94  AIYSAAVNMVQ---HPSPTLLGKGNFGSMT-DGAAAERYTNVRLSHYGQTFFDSDYINAE 149

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
              F   Y+++D EPV  P++ PN+L NG  GI VG+ T +P+   + + E    +    
Sbjct: 150 TTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKLPTFTPESVLEVLNRMFKGE 209

Query: 211 E---ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +   +   K L+Y        GG +V S+E+  +  ++  G         V ++ R    
Sbjct: 210 KLQAVDFAKTLKY----HHKWGGQLVRSKENQAQWKQMFVGSMANLQFEAVLDLDRDHKR 265

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           + ++  P        ++K+  +    +         +     +I   P       D  +E
Sbjct: 266 MTISSWPPGTNLETFMKKVRAMPECHKC-----FNSKGTTTYQIECKPGFNYDQFDKFVE 320

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQV---------MPLDGILKEWLAHRREVLFRRSSF 378
            +   +     F +N+       V  V         + +  ++ +W   R  +  +  ++
Sbjct: 321 KVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLILQWCRMRVALELKSLAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           R++  +  +   K L+ A   +D I   +R  D P   +     +T  Q   IL+L++R 
Sbjct: 381 RIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSD-PDASLQKLLKITAEQAKQILDLQVRK 439

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KL++ ++K  L     E +++ +     K    Q+  ++  V++   K  +   + +T
Sbjct: 440 LSKLDQSKLKGTLKTQEQELKQLQTWQAKPKA---QVLLDLAAVQQALDKDRNFKLKEST 496


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 7   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 66

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 67  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 125

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 126 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 185

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 186 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 245

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 246 EIIREELTEIKERFN 260


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 77/89 (86%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           PF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 19/203 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A++ ++ 
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDASIKIL- 238

Query: 209 NPEISIEKLLEYIIGPDFPTGGI 231
                  K   + I PDF T GI
Sbjct: 239 -------KGKPFTIYPDFQTAGI 254


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 6   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 65

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 66  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 124

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 125 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 184

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 185 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 244

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 245 EIIREELTEIKERFN 259


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 7   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 66

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 67  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 125

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 126 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 185

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 186 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 245

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 246 EIIREELTEIKERFN 260


>gi|48429402|gb|AAT42469.1| ParC [Escherichia coli B]
          Length = 166

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE
Sbjct: 3   KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEE 62

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+ E   L  E++++  +L S ++  N +  E++     +        RR+   E   
Sbjct: 63  MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGDD-----RRSPLQEREE 117

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 118 A-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 166


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 19/203 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A++ ++ 
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDASIKIL- 238

Query: 209 NPEISIEKLLEYIIGPDFPTGGI 231
                  K   + I PDF T GI
Sbjct: 239 -------KGKPFTIYPDFQTAGI 254


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 5   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 64

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 65  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 123

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 124 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 183

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 184 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 243

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 244 EIIREELTEIKERFN 258


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 19/203 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A++ ++ 
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDASIKIL- 238

Query: 209 NPEISIEKLLEYIIGPDFPTGGI 231
                  K   + I PDF T GI
Sbjct: 239 -------KGKPFTIYPDFQTAGI 254


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/128 (50%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLP 120

Query: 174 NLLANGTS 181
           N+L NGT+
Sbjct: 121 NILLNGTT 128


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 90/119 (75%), Gaps = 1/119 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 11  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSARTVGDVLGKY 70

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 71  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 129


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 122/203 (60%), Gaps = 19/203 (9%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A++ ++ 
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDASIKIL- 238

Query: 209 NPEISIEKLLEYIIGPDFPTGGI 231
                  K   + I PDF T GI
Sbjct: 239 -------KGKPFTIYPDFQTAGI 254


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 62  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 114


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 90/115 (78%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++I
Sbjct: 120 DGQ-PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 157/263 (59%), Gaps = 5/263 (1%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA
Sbjct: 1   TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 59

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L 
Sbjct: 60  DLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALV 119

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++I
Sbjct: 120 DGQ-PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLI 178

Query: 408 RNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           RN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +
Sbjct: 179 RNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDI 238

Query: 465 LNSGKQQWNQIACEIREVKEIFS 487
           L +  +    I  E+ E+KE F+
Sbjct: 239 LANEYKVLEIIREELTEIKERFN 261


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/92 (65%), Positives = 78/92 (84%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 92


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 86/116 (74%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 22  YAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 81

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++
Sbjct: 82  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENIN 137


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 5   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 64

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 65  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVDGQ-PKVL 123

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN      
Sbjct: 124 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 183

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 184 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVL 243

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 244 EIIREELTEIKERFN 258


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 88/117 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R++++A ++L
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVML 135


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLL 113


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 84/105 (80%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 179/354 (50%), Gaps = 56/354 (15%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   +  +L YA   I ERA+P++ DG KPV RRI+H+M    LD G  F K A IVG 
Sbjct: 47  LRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKL--LDDG-RFNKVANIVGN 103

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA 140
            + + HPHGD S+Y++LV+L     Q+  L+  QGN+GN + G  AAA RY EAR++Q A
Sbjct: 104 TM-QFHPHGDASIYEALVQLG----QKELLVETQGNWGNTLTGAGAAAGRYIEARLSQFA 158

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++             YN + +E  +              GIAVG+++ I  HN  EI 
Sbjct: 159 LDVV-------------YNPKVTEWTL-----------SAEGIAVGLSSKILPHNFNEII 194

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +        +   + + PDF TGG I  SR      Y  G  G  V+ R  +E+
Sbjct: 195 DAAISYL--------RGEPFTLYPDFFTGGSIDVSR------YNDGERGGVVKIRAKIEK 240

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNR 318
           +   +  + +TEIPY    + LIE I +   A +I  +  + D +A+  +V + L P   
Sbjct: 241 IDNKT--LAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQTANVIVYLLPGTS 297

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           S   D  +++++  +D E     N  V+S  + P  + +  +L+  +   R++L
Sbjct: 298 S---DKTIDALYAFTDCEVSVSPNCCVISDNK-PHFIGVSDVLRHNVDRTRDIL 347


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 152/252 (60%), Gaps = 4/252 (1%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  +
Sbjct: 3   IRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGI 62

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L 
Sbjct: 63  TDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLK 121

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
             L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       + 
Sbjct: 122 QCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIART 181

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I
Sbjct: 182 GLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEII 241

Query: 476 ACEIREVKEIFS 487
             E+ E+KE F+
Sbjct: 242 REELTEIKERFN 253


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  140 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 85/110 (77%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           YTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  YTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 110


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 86/107 (80%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYT
Sbjct: 10  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 69

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           EARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG
Sbjct: 70  EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNG 116


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 153/255 (60%), Gaps = 4/255 (1%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 1   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 60

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 61  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 119

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN      
Sbjct: 120 NLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEI 179

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 180 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVL 239

Query: 473 NQIACEIREVKEIFS 487
             I  E+ E+KE F+
Sbjct: 240 EIIREELTEIKERFN 254


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 150/249 (60%), Gaps = 4/249 (1%)

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+
Sbjct: 1   AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 60

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L
Sbjct: 61  RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCL 119

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MV 418
           + +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN    +     ++
Sbjct: 120 EHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLI 179

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E
Sbjct: 180 EQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREE 239

Query: 479 IREVKEIFS 487
           + E+KE F+
Sbjct: 240 LTEIKERFN 248


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           ++ED+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV
Sbjct: 1   MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQV 60

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPK 120

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            V++ RF +T+ Q DAIL+ +LR L KLEE +I+ E D
Sbjct: 121 AVLMERFGITDIQADAILDTKLRHLAKLEEMKIRGEQD 158


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 93/134 (69%), Gaps = 2/134 (1%)

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           + NG+SGIAVGMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT  II   
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NG 59

Query: 236 RESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR
Sbjct: 60  RRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKR 119

Query: 295 IPLLEDIRDESAED 308
           +  +  +RDES +D
Sbjct: 120 VEGISALRDESDKD 133


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 86/107 (80%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYT
Sbjct: 10  KKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 69

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           EARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG
Sbjct: 70  EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNG 116


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 79/103 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 4   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  A 
Sbjct: 64  YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAG 106


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 88/110 (80%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDD 110


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ AEL+
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELL 112


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 77/90 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 90


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ A
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYA 115


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 123/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP V  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP+GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LFPDFPSGGTMDAS------DYQAGLGSIVLRA 213


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 77/90 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 90


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 152/252 (60%), Gaps = 4/252 (1%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG   +RA+  +E+   G   I+VTE+P+QV K++LIEKIA+L+  K+I  +
Sbjct: 3   IRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIEGI 62

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L 
Sbjct: 63  TDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLK 121

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-- 416
             L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN    +    
Sbjct: 122 QCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIART 181

Query: 417 -MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I
Sbjct: 182 GLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEII 241

Query: 476 ACEIREVKEIFS 487
             E+ E+KE F+
Sbjct: 242 REELTEIKERFN 253


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/116 (56%), Positives = 85/116 (73%), Gaps = 1/116 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 4   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 63

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141
           HPHGD + Y ++V +AQPF  RYPL+ GQGN G  D   S AA RYTE+R+++ AE
Sbjct: 64  HPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPDDPKSFAAMRYTESRLSKDAE 119


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 77/90 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 90


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
             Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 62  PCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 113


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 148/245 (60%), Gaps = 4/245 (1%)

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 2   GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 61

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 62  DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 120

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN    +     ++ +FS
Sbjct: 121 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 180

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 181 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 240

Query: 483 KEIFS 487
           KE F+
Sbjct: 241 KERFN 245


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 83/109 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VY+++VR+A  F  RY LI GQGNFG++DG +AAA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           TE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 109


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++  +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 77/95 (81%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELL 95


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/113 (55%), Positives = 86/113 (76%), Gaps = 1/113 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA  YTE+R+++ AEL+L
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMCYTESRLSKYAELLL 113


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP+GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPSGGTMDAS------DYQDGLGSIVLRA 213


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP+GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPSGGTMDAS------DYQDGLGSIVLRA 213


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/88 (67%), Positives = 73/88 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD RDG KPVHRRI++ MSE+G+ + A  KKSARIVG+V+GK HPHGD SVY+++VR
Sbjct: 3   RALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAMVR 62

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           +AQ F  RYPLI G GNFG++DGD AAA
Sbjct: 63  MAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDI 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
           + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 62  ACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 113


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++   A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 84/106 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ +
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 77/95 (81%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELL 95


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ EA +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDFP GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LLPDFPPGGTMDAS------DYQDGLGSIVLRA 213


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 83/103 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 103


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G  D   S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 7/164 (4%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPLI GQGN+G  D   S AA RYTE+R+++ ++ +L  +    VD+   ++
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN++ NGT+GIAVGMAT IP HN +EI +A + L+DNP+  +  +++
Sbjct: 61  GTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVMQ 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           Y+ GPD+PT   I+ +++ I +S +      RV  R   E  GR
Sbjct: 121 YVQGPDYPTEAEIITAQDDIKKSIK------RVVVRSECELFGR 158


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 113/179 (63%), Gaps = 11/179 (6%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+H++ E  LD G  + K A +VG  + + HPH
Sbjct: 70  FLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE--LDDGR-YNKVANVVGHTM-QYHPH 125

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ D++V++ Q    R  LI  QGN+GNI  GDSAAA RY EAR+++ A  +L    
Sbjct: 126 GDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSAAASRYIEARLSKFALEVLYS-- 179

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
               D+  +Y+   +EP   P KFP LLA+G  GIAVG++T +  HN  E+ +A++ ++
Sbjct: 180 PKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVGLSTKVLPHNFNELIDASIKIL 238


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 82/108 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+S
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 108


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/99 (58%), Positives = 78/99 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E RM++VA  +L  ++++ VDF   Y+E +  P+V PS+
Sbjct: 61  EVRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSR 99


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELI 143
           Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 110


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 171/692 (24%), Positives = 298/692 (43%), Gaps = 89/692 (12%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR--IVGEVIG--- 84
           Y+ YA   +  RA+ D+RDG KPV R  ++ M          FK+ A+  I  E +G   
Sbjct: 52  YIDYAREVLTNRALEDIRDGLKPVQRYALYWM----------FKEKAKDMIKSEQVGAGV 101

Query: 85  -KLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGN-IDGDSAAAYRYTEARMTQVAE 141
            K HPH   S Y+SL ++ +     Y PL+ G+G  G      S AA RYT  +  + A+
Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +   +D   +D    +++ +  P V P+  P +L     GIAVG +T  PS   Q++  
Sbjct: 162 EMFTAMD--GIDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I + + S       +I PDF TGG I  + + + +  + G+G F  R +  ++  
Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFID-- 271

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRIVLFPKNRSL 320
           G+    IVVTE+P  V   +++++I +  I    P    D+  +      I    KNR  
Sbjct: 272 GKN---IVVTEVPQGVTVEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRAKNRV- 327

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-LDGILKEWLAHRREVLFRRSSFR 379
             ++LME ++  + ++ +F  N N+L++     V+  + GI+  W+  RR+VL R++   
Sbjct: 328 -QEVLME-LYTKTSLQKKF--NSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLD 383

Query: 380 MQAIDRRVEILKGLLIAYLNI----DEIIAI-IRNEDKPKPVMVSRFSLTENQV-DAILN 433
           +  +    +  KG  I  L I    DEI+ +  +  D      +  +   E  V + I+ 
Sbjct: 384 LAKLVESAKYTKG-FIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIK 442

Query: 434 LRLRSLR-------KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            RL   R       +   YQI  E+  L    E ID+L+     +++ +  +  E     
Sbjct: 443 RRLNQFRNDNKYINQYANYQI--EIAKLEKYLENIDTLILEDMDRFDLLVSKKHE----- 495

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RRT             +   ++++ I + +S   +   +K     L  LH K
Sbjct: 496 --------RRTEIT------NKVYEVETVKEDEIEIPVSECYY--QIKDGF--LRKLHVK 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQDIVT 604
                 I    +T   I+ LS++G+ + +     N L+G   G  I     L + Q +  
Sbjct: 538 PTSGEGIIFEGYTNSTIIALSSEGEIFRIYGNDINYLTGNDIGTYIPTYSGLANAQHV-- 595

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTG 658
             ++ + C   K ++    G    ++ +E +    K K +L+    +  +K+  V +   
Sbjct: 596 QLIWATVCDEKKYVLTYEDGFVGFLDTAEFLVGAIKSK-YLRNGISAHADKLTDVREYQE 654

Query: 659 DHVAVVGENRKLLIFS-IDQIPEMSRGKGVRL 689
           D V VV  + KL   + +D I   SR    R+
Sbjct: 655 DSVIVVETHDKLYACAHLDSIKMKSRTARTRV 686


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 84/106 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ +
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 87/112 (77%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ 
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 84/105 (80%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           QGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D ++
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHD 105


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 76/89 (85%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 11  KSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 70

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEED 162
           ARM+++A  ++  +D++ VDF+  Y+E++
Sbjct: 71  ARMSRLAHELMADIDKETVDFQPNYDEKE 99


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 76/105 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 2   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           GD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 62  GDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 82/103 (79%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 103


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 87/113 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 144/239 (60%), Gaps = 4/239 (1%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   
Sbjct: 4   IRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 63

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L  +L H++ V
Sbjct: 64  IVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQKVV 122

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+++ ++  + R  IL+GL IA  ++D +I++IRN    +     ++ +FSLTE Q 
Sbjct: 123 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQA 182

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+KE F+
Sbjct: 183 QAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFN 241


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 80/108 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
           E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+     +KKSAR VGEVIGK H
Sbjct: 19  ESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYH 78

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           PHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE R
Sbjct: 79  PHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETR 126


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 76/105 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 2   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           GD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 62  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 78/96 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 9   LGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 68

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 69  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 104


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 80/100 (80%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 100


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/118 (50%), Positives = 85/118 (72%), Gaps = 1/118 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP
Sbjct: 61  RLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIP 118


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/98 (58%), Positives = 78/98 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           S +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 7   SRIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 66

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 67  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 104


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 81/100 (81%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 100


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 86/111 (77%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 151/515 (29%), Positives = 241/515 (46%), Gaps = 75/515 (14%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  ++ YA   I ERAIP + DG KPV RR++  +    +D G    K A I G  +  
Sbjct: 8   FKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTL--FCMDDGK-MHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ IL
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPLAKEIL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+ EA +
Sbjct: 120 --FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCELIEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+++N          + + PDF +GG++  S       Y+ G G   +RA   ++ V + 
Sbjct: 178 AILNN--------RAFTLLPDFYSGGVMDASE------YQDGLGSITMRA--SIQTVDQK 221

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRI-VLFPKNRSLDP 322
           +  +++ EI        LI  I     AKR +  ++ I+D S +   I +  PK   +  
Sbjct: 222 T--LIIKEICPSTTTETLIRSIEN--AAKRGVIKIDSIQDFSTDQPHIEIKLPKG--VYA 275

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             ++E +F  ++ +         +   +     P++  + E L    EVL          
Sbjct: 276 KDIIEPLFQYTECQVVLTSRPTAIYNNK-----PVETSISEILKLHTEVL-------EGY 323

Query: 383 IDRRVEILKGLLIA---YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD---AILNLR- 435
           + + +EIL+  L     Y +++ I    R  D  +   +S+   T +Q D   A+L    
Sbjct: 324 LQKELEILQDELAQEHYYKSLEYIFIKYRLYDTVR-ANLSKLKNTVSQEDLHAAVLTALA 382

Query: 436 --LRSLRKLEEYQIKSELDNL----------------LAEKEKIDSLLNSGKQQWNQIAC 477
             L SL  +   Q   +L +L                LA  EK  + +N  K   N    
Sbjct: 383 PFLSSLPTIPSKQATGQLASLAIKKILCFNENRYTKDLAAIEKKQAAVN--KDLSNMKKF 440

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            I+ +K + +K  +LG+R+T     S+  K+ L+Q
Sbjct: 441 TIKYLKGLSAKYGELGKRKTQVLSFSKQKKSILKQ 475


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 82/115 (71%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGD
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGD 123


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 2   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           GD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 62  GDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 25/230 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ +L
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++ +A +
Sbjct: 120 --FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLKAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           A++++   S        + PDF +GG +  S       Y+ G G   +RA
Sbjct: 178 AILNDQPFS--------LFPDFASGGSMDAS------DYQDGLGSIVLRA 213


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 99


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 138/516 (26%), Positives = 241/516 (46%), Gaps = 71/516 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ IL
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKDIL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E+ EA +
Sbjct: 120 --FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYELIEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+++N          + + PDF +GG++  S       Y+ G G   +RA   + +    
Sbjct: 178 AILNN--------RTFTLLPDFYSGGVMDASE------YQDGLGSITIRASIQIVD---- 219

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRI-VLFPKNRSLDP 322
           S  +++ EI        LI  I     AKR +  ++ I+D S +   I +  PK   +  
Sbjct: 220 SKTLIIKEICPSTTTETLIRSIEN--AAKRGVIKIDSIQDFSTDQPHIEIKLPKG--IYA 275

Query: 323 DLLMESIFMLSDMETRF-----------PLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
             ++E +F  ++ +              P+  ++  + ++     L+G L++ L    + 
Sbjct: 276 KDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILKL-HTEALEGYLQKELQILHDE 334

Query: 372 LFRRSSFR-MQAI---DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           L +   ++ ++ I    R  +I++ LL    N       +  ED  + V+ S      + 
Sbjct: 335 LAQEHYYKSLEYIFIKHRLYDIVRELLSKLGN------KVSQEDLHEAVLASLAPFISSL 388

Query: 428 VDA--------ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            +A        + +L ++ +    E     +L+ +  ++  +   L++ K+        I
Sbjct: 389 PEAPCKQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKK------FTI 442

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           + +K + +K  +LG+R+T     S   K+ L+Q  +
Sbjct: 443 KYLKGLLAKYGELGKRKTQILSFSNQKKSVLKQQTL 478


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 87/112 (77%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP
Sbjct: 61  RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 118


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/96 (62%), Positives = 77/96 (80%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+E+       + KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           QGNFG+IDGDSAAA RYTEARM+++A  ++  +D++
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKE 96


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 80/102 (78%), Gaps = 1/102 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           PF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 102


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|332286985|ref|YP_004421886.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 240/516 (46%), Gaps = 71/516 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  ++ YA   I ERAIP + DG KPV RR++  +    +D G    K A I G  +  
Sbjct: 8   FKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTL--FCMDDGK-MHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ IL
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPLAKEIL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+ EA +
Sbjct: 120 --FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCELIEAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+++N          + + PDF +GG++  S       Y+ G G   +RA   ++ V + 
Sbjct: 178 AILNN--------RAFTLLPDFYSGGVMDASE------YQDGLGSITMRA--SIQTVDQK 221

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRI-VLFPKNRSLDP 322
           +  +++ EI        LI  I     AKR +  ++ I+D S +   I +  PK   +  
Sbjct: 222 T--LIIKEICPSTTTETLIRSIEN--AAKRGVIKIDSIQDFSTDQPHIEIKLPKG--VYA 275

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ- 381
             ++E +F  ++ +         +   +     P++  + E L    EVL       +Q 
Sbjct: 276 KDIIEPLFQHTECQVVLTSRPTAIYNNK-----PIETSVSEILKLHTEVLEGYLQQELQI 330

Query: 382 -----AIDRRVEILKGLLIA---YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                A +   + L+ + I    Y  + E ++ ++N+       VS+  L E  + A+  
Sbjct: 331 LHDELAQEHYYKSLEYIFIKHRLYDTVRENLSKLKNK-------VSQEDLHEAVLTALAP 383

Query: 434 LRLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQW-------NQIACEI 479
             L SL ++   Q   +L +L         E      L    K+Q        N     I
Sbjct: 384 F-LSSLPEIPSKQATGQLASLAIKKILCFNENSYTKDLATIEKKQAAVKKDLSNMKKFTI 442

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           + +K + +K  +LG+R+T     S+  K+ L+Q  +
Sbjct: 443 KYLKGLLAKYGELGKRKTQVLSFSKQKKSILKQQTL 478


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 77/96 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 98


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/110 (51%), Positives = 85/110 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
             L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           PF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 102


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 74/85 (87%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 7   SAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAM 66

Query: 130 RYTEARMTQVAELILQGVDEDAVDF 154
           RYTEARMT++AE +L+ +D+D V+F
Sbjct: 67  RYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 75/105 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 2   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           GD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 62  GDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 86/110 (78%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 85/110 (77%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 77/96 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 99


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 75/105 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 2   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           GD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 62  GDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 78/97 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 97


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 76/94 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 9   IGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 68

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 69  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDT 102


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 78/99 (78%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 99


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 77/97 (79%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 68

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 69  EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 78/98 (79%), Gaps = 1/98 (1%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF  
Sbjct: 4   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 63

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 64  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 101


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 78/97 (80%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 68

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 69  EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 78/98 (79%), Gaps = 1/98 (1%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF  
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
           RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL+L
Sbjct: 62  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 99


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 77/96 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 99


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 77/96 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+D+  A+KKSAR+VG+V G+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 10  LGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 69

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 70  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 105


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           GD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 77/96 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 98


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 78/97 (80%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 68

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 69  EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 240/515 (46%), Gaps = 68/515 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
           LHPHGD  + ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+ IL
Sbjct: 64  LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPLAKEIL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E+  A +
Sbjct: 120 --FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCELIAAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+++N          + + PDF +GG++  S       Y+ G G   +RA   + +    
Sbjct: 178 AVLNNR--------AFTLLPDFYSGGVMDASE------YQDGLGSITMRASIQIAD---- 219

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRI-VLFPKNRSLDP 322
              +++ EI        LI  I     AKR +  ++ I+D S +   I +  PK   +  
Sbjct: 220 QKTLIIKEICPSTTTETLIRSIEN--AAKRGVIKIDSIQDFSTDQPHIEIKLPK--GVYA 275

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             ++E++F  ++ +         +   +     P++  + E L    EVL       +Q 
Sbjct: 276 KDILETLFQHTECQVVLTSKPTAIYNNK-----PVETTISEILRLHTEVLEGYLQKELQI 330

Query: 383 I------DRRVEILKGLLIAYL-------NIDEIIAIIRNEDKPKPVM--VSRF--SLTE 425
           +      +   + L+ + I +        N+ ++   +  ED  + V+  +S F  SL E
Sbjct: 331 LHDELSQEHYYKSLEYIFIKHRLYDTVRENLSKLGNKVSQEDLHEAVLSSLSPFLASLPE 390

Query: 426 N----QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                    + +L ++ +    E     +L  +  ++  ++  LN+ K+        I+ 
Sbjct: 391 TPNKEATGQLASLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNNMKK------FTIKY 444

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMI 515
           +K + +K  +LG+R+T     S+  K+ L QQA++
Sbjct: 445 LKGLLAKYGELGKRKTQVLSFSKQKKSVLKQQALV 479


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 76/94 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 96


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G  D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL NG+ G
Sbjct: 61  YTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 78/98 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYD 98


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGT 120

Query: 181 S 181
           +
Sbjct: 121 T 121


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 84/105 (80%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDD 105


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 77/98 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 2   ARIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 62  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 99


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+AVDF   Y+++  EP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/100 (55%), Positives = 79/100 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D  +++
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNNDDK 100


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ G
Sbjct: 61  YTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 76/95 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           S +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   SVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 77/102 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 76/100 (76%)

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D   S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGT 120

Query: 181 S 181
           +
Sbjct: 121 T 121


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 78/98 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF + Y+
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYD 98


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 76/100 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           RYPLI GQGN+G  D   S AA RYTE+R+++ ++++L  +    VD+
Sbjct: 61  RYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDW 108


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M   G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +IDGD+ AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 123 G-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 61  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 120


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/89 (60%), Positives = 74/89 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYN 159
           YTE R+ ++A  ++  ++++ VDF DTY+
Sbjct: 64  YTEIRLAKIAHELMADLEKETVDFVDTYD 92


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 78/106 (73%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7   QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           SARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 67  SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/83 (69%), Positives = 72/83 (86%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 7   SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 66

Query: 130 RYTEARMTQVAELILQGVDEDAV 152
           RYTEARMT++AE +L+ +D+D V
Sbjct: 67  RYTEARMTRIAEEVLRDLDKDTV 89


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 5/116 (4%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD----FRDTYNE 160
           PL+ GQGN+G  D   S AA RYTE+R+++ AE++L  +    VD    F  T NE
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNE 116


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/82 (70%), Positives = 71/82 (86%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA R
Sbjct: 8   AYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMR 67

Query: 131 YTEARMTQVAELILQGVDEDAV 152
           YTEARMT++AE +L+ +D+D V
Sbjct: 68  YTEARMTRIAEEVLRDLDKDTV 89


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 71/82 (86%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD SV+D+LVR+AQ F  R PL+ GQGNFG++DGDSAAA R
Sbjct: 8   AYKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMR 67

Query: 131 YTEARMTQVAELILQGVDEDAV 152
           YTEARMT++AE +L+ +D+D V
Sbjct: 68  YTEARMTRIAEEVLRDLDKDTV 89


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  + ++ VDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLKKETVDF 91


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  + ++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDF 92


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 77/98 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           S +G D+  A+KKSAR+VG+VIGK +PHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 8   SRIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 67

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 68  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 105


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 78/102 (76%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEA
Sbjct: 1   SARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           RM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL
Sbjct: 61  RMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLL 102


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           AA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVD 90


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF
Sbjct: 2   IADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPF 61

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144
             RYP + GQGN+G+ D   S AA RYTEAR++  A+++L
Sbjct: 62  SYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSLYADVLL 101


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 76/100 (76%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DGDSAAA RYTE R+ ++A  ++  + ++ VDF   Y+ +
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYDRK 100


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   IGHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHR I++ M E+G     A+KKSARIVGEV+GK
Sbjct: 7   MKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIVGEVLGK 66

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY +LVR+AQ +  RYPL+ GQGN
Sbjct: 67  YHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           AA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFVD 90


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/96 (54%), Positives = 77/96 (80%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTEARM+++A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
             +L+ ++++ VDF D Y+  + EP+V P++FPNLL
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLL 96


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 75/98 (76%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           T++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 125/231 (54%), Gaps = 25/231 (10%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            + +++ YA   I ERAIP + DG KPV RR++  +  M         K A I G  +  
Sbjct: 8   FKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELIL 144
            HPHGD ++ ++LV LA     +  LI  QGNFGN + GD  AA RY EAR++ +A+  L
Sbjct: 64  FHPHGDAAIIEALVVLAN----KGYLIETQGNFGNPLTGDPHAAARYIEARLSPLAKETL 119

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
              + D +  +D+Y+  D EP   PSK P LL +G  GIAVGM T I  HN  E+ +A +
Sbjct: 120 --FNTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSELIQAQI 177

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           AL+ N          + + PDFP+G ++  ++      Y+ G G   +RA+
Sbjct: 178 ALLKN--------RPFTLLPDFPSGALMDATQ------YQDGLGSVLLRAK 214


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 80/102 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVD 102


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            ++A  ++  ++++ VDF D Y+  +  P V P+K PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 75/97 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/96 (55%), Positives = 77/96 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 72/88 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDF 154
           AA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDF 88


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/83 (69%), Positives = 71/83 (85%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 7   SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 66

Query: 130 RYTEARMTQVAELILQGVDEDAV 152
           RYTEARMT++AE  L+ +D+D V
Sbjct: 67  RYTEARMTRIAEEALRDLDKDTV 89


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 74/91 (81%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 92


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 77/107 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 1   NWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           AA RYTE RM ++A  +L  ++++       Y+  +  P V P+K P
Sbjct: 61  AAMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDT 91


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 186/378 (49%), Gaps = 55/378 (14%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328
           ++E+PYQV K++L+EKIAELI  K+I  + +I D S  E +RI +  K R    ++++  
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIK-RDAVGEVVLNH 59

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ RRS F ++    R  
Sbjct: 60  LYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTH 118

Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------------------------- 420
           IL+GL +A  NIDE+IAIIRN    ++    + SR                         
Sbjct: 119 ILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENL 178

Query: 421 ------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + L+  QV+AIL LRL  L  +   ++  E   LL +   +  +L+S ++    
Sbjct: 179 GIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEV 238

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--- 531
           I  E+ EVK  F      G  R T  E++ A      + +I +E + V +S+ G+++   
Sbjct: 239 IREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQP 290

Query: 532 -----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG 585
                + +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L  + RG
Sbjct: 291 LTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRG 350

Query: 586 -HGEAIQLLIDLNHNQDI 602
             G  I  ++ L  N+ I
Sbjct: 351 ARGRPIVNILPLQENERI 368


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           ++A  +L  ++++ VD+   Y+  +  P V P+K PNL
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 74/93 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 79/106 (74%), Gaps = 1/106 (0%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           PLI GQGN+G  D   S AA RYTE+R+++ ++++L  +    VD+
Sbjct: 61  PLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDW 106


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 72/88 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDF 154
           AA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDF 88


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/86 (61%), Positives = 71/86 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDFRD 156
           YTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  YTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 73/91 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+ G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           DSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIVGEV+GK
Sbjct: 6   MKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVGEVLGK 65

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 66  YHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
             ++  ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 75/100 (75%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+V GK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DGDSAAA RYTE R+ ++A  ++  + ++ VDF D  N +
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLKKETVDFVDKNNRK 100


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/86 (61%), Positives = 71/86 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDFRD 156
           YTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  YTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 70/87 (80%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELIL 144
           FG++DGDSAAA RYTE RM ++A  +L
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELL 87


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA 
Sbjct: 7   SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 66

Query: 130 RYTEARMTQVAELILQGVDEDAV 152
           RYTE RMT++AE  L+ +D+D V
Sbjct: 67  RYTEVRMTRIAEEALRDLDKDTV 89


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
             L+ G GNFG++DGDS AA RYTEA+M++++
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/84 (61%), Positives = 70/84 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDF 154
           YTE R+ ++A  ++  ++++ VDF
Sbjct: 64  YTEIRLAKIAHGLMADLEKETVDF 87


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/84 (61%), Positives = 70/84 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDF 154
           YTE R+ ++A  ++  ++++ VDF
Sbjct: 64  YTEIRLAKIAHGLMADLEKETVDF 87


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 178/367 (48%), Gaps = 33/367 (8%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+      RAIP   DG KPV RRI+ AM     D      K+ ++ G  +G  HPHGD+
Sbjct: 23  YSRYVCDSRAIPQEIDGLKPVQRRILWAM--WNSDARNRHTKTVKVAGLAMG-YHPHGDR 79

Query: 93  SVYDSLVRLAQ--PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDE 149
           S+ D+L ++AQ   F   YPL+ G+G FG++ D ++ A+ RYTE +++  A+ +      
Sbjct: 80  SIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASPRYTEVKLSDFAKDLGFFESL 139

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             +D+   Y+E + EP+ F  K P +L N   GIA G    IP+H + ++ E+ +  +  
Sbjct: 140 PDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFRCFIPAHKLSDVIESQVTYLKT 199

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +   +K+  +  G     GG +  S+     +      GF+       +E G+    + 
Sbjct: 200 GK--PKKITPWYKG----YGGEVKLSKNDNGNTVMSTTFGFK-------KEDGK----LY 242

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + + P    + +++  + +L I ++   L+D  D S++  +I L  K      +  ++ +
Sbjct: 243 LVDSPMNWNREKVVNYLDDL-IERKDNWLKDYVDHSSQTFKIELIAKKGEEPSEKEIKEL 301

Query: 330 FMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR----SSFRMQAID 384
           F   + E    L +NV++  G++    P + I+K +   R+  L RR    +    + ID
Sbjct: 302 FTKENNEV---LTINVITHEGKLRNFGP-EEIIKRFCDFRKTHLIRRFKRLAGLEKEKID 357

Query: 385 RRVEILK 391
           R  E+++
Sbjct: 358 RNSELIR 364


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 178/367 (48%), Gaps = 33/367 (8%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+      RAIP   DG KPV RRI+ AM     D      K+ ++ G  +G  HPHGD+
Sbjct: 28  YSRYVCDSRAIPQEIDGLKPVQRRILWAM--WNSDARNRHTKTVKVAGLAMG-YHPHGDR 84

Query: 93  SVYDSLVRLAQ--PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDE 149
           S+ D+L ++AQ   F   YPL+ G+G FG++ D ++ A+ RYTE +++  A+ +      
Sbjct: 85  SIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASPRYTEVKLSDFAKDLGFFESL 144

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             +D+   Y+E + EP+ F  K P +L N   GIA G    IP+H + ++ E+ +  +  
Sbjct: 145 PDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFRCFIPAHKLSDVIESQVTYLKT 204

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +   +K+  +  G     GG +  S+     +      GF+       +E G+    + 
Sbjct: 205 GK--PKKITPWYKG----YGGEVKLSKNDNGNTVMSTTFGFK-------KEDGK----LY 247

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + + P    + +++  + +L I ++   L+D  D S++  +I L  K      +  ++ +
Sbjct: 248 LVDSPMNWNREKVVNYLDDL-IERKDNWLKDYVDHSSQTFKIELIAKKGEEPSEKEIKEL 306

Query: 330 FMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR----SSFRMQAID 384
           F   + E    L +NV++  G++    P + I+K +   R+  L RR    +    + ID
Sbjct: 307 FTKENNEV---LTINVITHEGKLRNFGP-EEIIKRFCDFRKTHLIRRFKRLAGLEKEKID 362

Query: 385 RRVEILK 391
           R  E+++
Sbjct: 363 RNSELIR 369


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM ++
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           +E I+  ++++ VDF+  +++   EP V P+K P LL N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 76/100 (76%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   ARIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DGDSAAA RYT  R+ ++A  ++  ++++ V F D Y ++
Sbjct: 61  DGDSAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYEDK 100


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 72/89 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           DSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETV 91


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 69/82 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA R
Sbjct: 8   AYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMR 67

Query: 131 YTEARMTQVAELILQGVDEDAV 152
           YTE R T++AE +L+ +D+D V
Sbjct: 68  YTEVRTTRIAEEVLRDLDKDTV 89


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 82/116 (70%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A+ +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 79/111 (71%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G      F+KSA+ VG VIG  HPHGD SVYD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Q +  R  LI   GN G++DGD AAA RYTEAR++++A+ +L  +D+  V+
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVE 111


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 75/99 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G+ D   S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G+ D   S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/79 (65%), Positives = 67/79 (84%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 73/93 (78%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RY
Sbjct: 7   YKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           TEAR+++++  +L+ +D++ VDF   Y+  + E
Sbjct: 67  TEARLSKISYELLKYIDKETVDFVPNYDASEQE 99


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 73/96 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
             L+ G GNFG++DGDS AA RYTEA+M++++
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 77/100 (77%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+V G+ HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 2   ARIGHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSI 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D  +++
Sbjct: 62  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKNDDK 101


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 7/175 (4%)

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I+  +  I + Y  GRG  ++RA W  E+   G   I+++ +P+Q   S++I +IA+ + 
Sbjct: 1   IISPKSEIRKIYEQGRGSIKMRATWKKED---GE--IIISALPHQSSPSKVIAQIADQMT 55

Query: 292 AKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           AK++P+LEDIRDE+  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ + 
Sbjct: 56  AKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLD 115

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
             P V  L  IL EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I
Sbjct: 116 HKPAVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 72/97 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G     AF+KSA+ VG VIG  HPHGD SVY+++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           Q +  R PLI   GN G++DGD AAA RYTEAR++++
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSKL 97


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 71/86 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDEDAVDFRD 156
           YTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  YTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 66/77 (85%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVA 140
           DSAAA RYTE RM+++A
Sbjct: 63  DSAAAMRYTEVRMSKIA 79


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 73/90 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELIL 144
           FG++DGDSAAA RYTE RM ++A  +L
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELL 87


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 70/92 (76%), Gaps = 1/92 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF
Sbjct: 15  IADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPF 74

Query: 106 VQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136
             RYP + GQGN+G+ D   S AA RYTEAR+
Sbjct: 75  SFRYPFVDGQGNWGSADDPKSFAAMRYTEARL 106


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRII++MSE+GL+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  
Sbjct: 3   DGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSY 62

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEAR 135
           RYPLI GQGNFG+ D   S AA RYTE+R
Sbjct: 63  RYPLIEGQGNFGSSDDPKSFAAMRYTESR 91


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 71/87 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVD 153
           AA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVD 87


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 73/91 (80%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 4   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 63

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           +IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 64  SIDGDSAAAMRYTEIRLAKIAHELMADLEKE 94


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT+
Sbjct: 1   VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTK 60

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +A  +L  +++D VD+ D Y+  +  P V P++ P
Sbjct: 61  LAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 135/222 (60%), Gaps = 4/222 (1%)

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 1   IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 60

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  
Sbjct: 61  LYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAH 119

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  
Sbjct: 120 ILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLERE 179

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +I+ E   L+    ++  +L +  +    I  E+ E+KE F+
Sbjct: 180 KIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFN 221


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 135/223 (60%), Gaps = 4/223 (1%)

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+VTE+PYQV K  LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ 
Sbjct: 4   IIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILN 63

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R 
Sbjct: 64  NLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARA 122

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL +A  ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE 
Sbjct: 123 HILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLER 182

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +I+ E  +L+    ++  +L +  +    I  E+ E+KE F+
Sbjct: 183 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFN 225


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 70/90 (77%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 6   YVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 65

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           TE RM ++ + +L  +D++ V+F   Y+ E
Sbjct: 66  TEVRMQKITQALLTDLDKETVNFSPNYDGE 95


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 74/94 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           EARM+++A  +L+ ++++ VDF D Y+  + EP+
Sbjct: 64  EARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 74/94 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           EARM+++A  +L+ ++++ VDF D Y+  + EP+
Sbjct: 64  EARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 80/116 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD  +YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 70/88 (79%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK+AR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA  Y
Sbjct: 2   YKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMPY 61

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYN 159
           TE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 62  TEIRLAKIAHGLMADLEKETVDFVDNYD 89


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/92 (55%), Positives = 69/92 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+++GFKPVHRRI+  M  +G      +KKSAR+VGEV+GK
Sbjct: 2   MKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY +LVR+AQP+  RY L+ GQGN
Sbjct: 62  YHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y ++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 64/79 (81%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
           AL ERYL YALSTI  R++PDLRDG KPVHRR++  M ++ LD  + FKKSAR+VGEVIG
Sbjct: 24  ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPSSGFKKSARVVGEVIG 83

Query: 85  KLHPHGDQSVYDSLVRLAQ 103
           K HPHGD + YD++VRLAQ
Sbjct: 84  KYHPHGDTAAYDAMVRLAQ 102


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 200/422 (47%), Gaps = 38/422 (9%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+      RAIP   DG KPV RRI+ AM     D    + K+ ++ G  +G  HPHGD+
Sbjct: 29  YSRYVCDSRAIPHEIDGLKPVQRRILWAM--WNSDARNRYTKTVKVAGLAMG-YHPHGDK 85

Query: 93  SVYDSLVRLAQ--PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDE 149
           S+ D+L ++AQ   F    PL+SG+G FG++ D  + A+ RYTE +++   + +      
Sbjct: 86  SIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSDFVKDLGFFESL 145

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             +D+   Y+E + EP+ F  K P +L N   GIA G    IP H + +I ++ +  + +
Sbjct: 146 PDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADIVKSQINYLKS 205

Query: 210 PE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
            + +S++   +     DF  G + +   E+         G   +   +  +  G     +
Sbjct: 206 KKPLSLKPWYK-----DF-NGEVKMAETET---------GNITMSTTFAFKWEGD---TL 247

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            +T+ P    + ++I  + + I+ ++   L+D  D S++  R+ L  K         + +
Sbjct: 248 YLTDSPMNWNREKVIS-LLDDILERKDSWLKDYVDYSSQTFRVELQYKKGEKPSQKEIMA 306

Query: 329 IFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR----SSFRMQAI 383
           +F   D++T   L MNV++  G++    P + I+K +   R+  L RR    S    + I
Sbjct: 307 LFNKEDVQT---LAMNVITYDGKLKNFKP-EEIIKRFCDFRKTHLIRRFKRLSGLEEEKI 362

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN-QVDAILNLRLRSLRKL 442
           +R  E+++   I     +++I I   +D  + +  S+F   E      +  + +  ++K 
Sbjct: 363 ERNSELIR--FIKEKWNEKVIGIKSKKDFEEKLKTSKFKYFEWLSTIPVYRMTIEEVKKC 420

Query: 443 EE 444
           EE
Sbjct: 421 EE 422


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 67/81 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELIL 144
           DSAAA RYTE R+ ++A  ++
Sbjct: 63  DSAAAMRYTEIRLAKIAHELM 83


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 69/91 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/90 (55%), Positives = 70/90 (77%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RY
Sbjct: 6   YVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 65

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           TE RM ++ + +L  +D++ V+F   Y+ E
Sbjct: 66  TEVRMQKITQALLTDLDKETVNFSPNYDGE 95


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 74/94 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           EARM+++A  +L+ ++++ VDF D Y+  + EP+
Sbjct: 64  EARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP 
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEA 134
           + GQGNFG++DGD  AA RYTEA
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTEA 83


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 216/462 (46%), Gaps = 47/462 (10%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+      RAIP   DG KPV RRI+ AM     D    + K+ ++ G  +G  HPHGD+
Sbjct: 29  YSRYVCDSRAIPHEIDGLKPVQRRILWAM--WNSDARNRYTKTVKVAGLAMG-YHPHGDK 85

Query: 93  SVYDSLVRLAQ--PFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDE 149
           S+ D+L ++AQ   F    PL+SG+G FG++ D  + A+ RYTE +++   + +      
Sbjct: 86  SIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSDFVKDLGFFESL 145

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             +D+   Y+E + EP+ F  K P +L N   GIA G    IP H + +I ++ +  +  
Sbjct: 146 PDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADIVKSQINYLKT 205

Query: 210 PE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
            + +S++   +     DF  G + +   E+         G   +   +  +  G     +
Sbjct: 206 KKPLSLKPWYK-----DF-NGEVKMAETET---------GNITMSTTFAFKWEGD---IL 247

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            +T+ P    + ++I  + + I+ ++   L++  D S++  RI L  K         + +
Sbjct: 248 YLTDSPMNWNREKVIS-LLDDILERKDSWLKEYVDYSSQTFRIELQYKKGEKPSQKEIMA 306

Query: 329 IFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR----SSFRMQAI 383
           +F   D++T   L MNV++  G++    P + I+K +   R+  L RR    S    + I
Sbjct: 307 LFNKEDIQT---LAMNVITYDGKLKNFKP-EEIIKRFCDFRKTHLIRRFKRLSGLEEEKI 362

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN-QVDAILNLRLRSLRKL 442
           +R  E+++   I     +++I I   +D    +  S+F   E      +  + +  ++K 
Sbjct: 363 ERNSELIR--FIKEKWNEKVIGIKSKKDFEDKLKASKFKYFEWLSTIPVYRMTIEEVKKC 420

Query: 443 EEYQIKSE-----LDNLLAEKEKIDSL----LNSGKQQWNQI 475
           EE  I+++        L+ E +K+       LN  + +W+++
Sbjct: 421 EEAIIEAKTTLARYQGLVKEDKKLTDYMITELNELQNKWDKV 462


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPH D +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVA 140
           IDGDSAAA RYTE R+ ++A
Sbjct: 61  IDGDSAAAMRYTEIRLAKIA 80


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I 
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 114 GQGNFGNIDGDSAAAYR 130
           GQGNFG+IDGD AAA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/107 (48%), Positives = 77/107 (71%), Gaps = 2/107 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M  +G+     +  SAR VG+V+GK HPHGD+SVYD +VR+AQP+  RYP + GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           G++DGD  AA RYTEAR+ ++++ IL  +D++  DF++ +  +DS P
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNF--DDSLP 105


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 66/80 (82%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVA 140
           IDGDSAAA RYTE R+ ++A
Sbjct: 61  IDGDSAAAMRYTEIRLAKIA 80


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNF 118
           +S+VR+AQPF  RY L+ G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 64/74 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGD 124
           L+ GQGNFG+IDGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELIL 144
           SAAA RYTE R+ ++A  ++
Sbjct: 61  SAAAMRYTEIRLAKIAHELM 80


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 73/96 (76%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I
Sbjct: 1   GKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEI 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  MADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 96


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 71/90 (78%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   ATNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 72/92 (78%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RM+++A  IL+ ++++ VDF D Y+  + EP+
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYDANEREPL 92


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 6/175 (3%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++
Sbjct: 2   EVYKSGNGSIRQQAVYGYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 301 IRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I+DES   E V+IVL+      +   +ME +   +D+E  + +NMN++ +   PQV  L 
Sbjct: 58  IQDESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDNRPQVKNLL 117

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            IL +WL +R+  L RR    +  +  R+ IL+GLL+A+LNIDE+I IIRN D P
Sbjct: 118 DILNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 68/83 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDE 149
           AA RYTE R+ ++A  ++  +++
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEK 83


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 57/404 (14%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++H   ++       F K A I G
Sbjct: 7   NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ S  D+   +A  +   YPL+ GQGNFG+     AAA RY  AR+++  
Sbjct: 67  GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARVSK-- 124

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPV-----VFPSKF-----PNLLANGTSGIAVGMATS 190
                       +F + Y + +  P        P KF     P +L NG SGIA G AT+
Sbjct: 125 ------------NFYNVYKDTEYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATN 172

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  H+ + + +A L  +    ++  K +E+   P+F      V+ R  I  +Y+     F
Sbjct: 173 ILPHSFKSVKKAVLQALQGKNVTKPK-VEF---PEFRGEVHEVDGRYEIHGTYK-----F 223

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             R +            + +TEIPY+  +   + K+ + +  K +   ED   E     +
Sbjct: 224 TSRTQ------------MQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCGEHGFGFK 271

Query: 311 IVLFPKNRSL--DPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAH 367
            V F K  SL  D +L  E I     +  R   N+ V++  G++     +  ++K+++  
Sbjct: 272 -VKFRKEYSLPDDEELRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLIKDFVEV 330

Query: 368 RREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNE 410
           R+  + +R       ID ++ E  K   +A+     I  +I  E
Sbjct: 331 RKTYVQKR-------IDNKILESEKAFKLAFAKAHFIKKVISGE 367


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 69/86 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDE 149
           DSAAA RYTE R+ ++A  ++  +++
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEK 87


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 65/80 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQV 139
           ++DGD AAA RYTEARM+++
Sbjct: 61  SVDGDGAAAMRYTEARMSKI 80


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 72/92 (78%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RM+++A  +L+ ++++ VDF D Y+  + EP+
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREPL 92


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 68/83 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 61

Query: 127 AAYRYTEARMTQVAELILQGVDE 149
           AA RYTE R+ ++A  ++  +++
Sbjct: 62  AAMRYTEIRLAKIAHELMADLEK 84


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 72/95 (75%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/82 (67%), Positives = 66/82 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+ IGK  PHGD S +D+LVR+AQ F  R PL+ GQGNFG IDGDSAAA R
Sbjct: 8   AYKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGDSAAATR 67

Query: 131 YTEARMTQVAELILQGVDEDAV 152
           YTEARMT++AE  L+ +D+D V
Sbjct: 68  YTEARMTRIAEEELRDLDKDTV 89


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 66/79 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDE 149
           YTE R+ ++A  ++  +++
Sbjct: 64  YTEIRLAKIAHELMADLEK 82


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 65/81 (80%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIK 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 70/99 (70%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           ++F KSA+IVG+V+G  HPHGD ++YD++VRLAQP+  RYPL+SGQGNFG      AAA 
Sbjct: 6   SSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDLGAAAP 65

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           RYTEARM  +A  +++ + E+ VDF   Y+    EP + 
Sbjct: 66  RYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 65/79 (82%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARM 136
           FG++DG +AAA RYTE RM
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 10/243 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ +
Sbjct: 10  KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFI 69

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            T G++Y +    L S RG GE +   + L     +    +     KLL+ S  G  F+ 
Sbjct: 70  DTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVC 129

Query: 627 EESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
             ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F +D +P++S+G
Sbjct: 130 TFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKG 189

Query: 685 KGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           KG ++        +  D G++ +        LT I    R       +L   +G+RG  G
Sbjct: 190 KGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQKVVGERGRRG 248

Query: 738 SLV 740
           +L+
Sbjct: 249 TLM 251


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 71/92 (77%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y++ VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RM+++A  +L+ ++++ VDF D Y+  + EP+
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREPL 92


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 67/83 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 61

Query: 127 AAYRYTEARMTQVAELILQGVDE 149
           AA RYTE R+ ++A  ++  +++
Sbjct: 62  AAMRYTEIRLAKIAHELMADLEK 84


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++YD++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V++ D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/94 (52%), Positives = 72/94 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AA  RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQRYT 63

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           EARM+++A  +L+ ++++ VDF   Y+  + EP+
Sbjct: 64  EARMSKIALEMLRDINKNTVDFVANYDANEREPL 97


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 65/79 (82%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARM 136
           FG++DG +AAA RYTE RM
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 65/81 (80%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 1   VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 60

Query: 139 VAELILQGVDEDAVDFRDTYN 159
           +A  ++  ++++ VDF D Y+
Sbjct: 61  IAHELMADLEKETVDFVDNYD 81


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNIL 105


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 NVYKDTEYAPVH----QDKEHIPPAFYLPVIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 H----------ITEIPYKYDRETYVSKI 247


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 NVYKDTEYAPVH----QDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 H----------ITEIPYKYDRETYVSKI 247


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 SVYKDTEYAPVH----QDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 N----------ITEIPYKYDRETYVSKI 247


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 NVYKDTEYAPVH----QDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 H----------ITEIPYKYDRETYVSKI 247


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           R R+   E   A KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K 
Sbjct: 4   RCRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 62

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +     K
Sbjct: 63  AVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQK 122

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLL 671
           LL+ S  G  F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L
Sbjct: 123 LLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRML 182

Query: 672 IFSIDQIPEMSRGKGVRL 689
           +F +D +P++S+GKG ++
Sbjct: 183 MFPVDSLPQLSKGKGNKI 200


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 NVYKDTEYAPVH----QDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 H----------ITEIPYKYDRETYVSKI 247


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 31/268 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++   
Sbjct: 68  VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  + +
Sbjct: 128 NVYKDTEYAPVH----QDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRLGRGGFRVRARWCV 258
           A L  +   +++  K+       +FP      E R  +VE    Y + RG ++  +R  +
Sbjct: 184 AVLQALQGKKVTKPKV-------EFP------EFRGEVVEIDGQYEI-RGTYKFTSRTQM 229

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                      +TEIPY+  +   + KI
Sbjct: 230 H----------ITEIPYKYDRETYVSKI 247


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNIL 105


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 60/69 (86%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 132 TEARMTQVA 140
           TE R+ ++A
Sbjct: 61  TEIRLAKIA 69


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 77/104 (74%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNIL 105


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 76/100 (76%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDE 100


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNIL 105


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 76/100 (76%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDE 100


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 65/79 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 4   AYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 63

Query: 131 YTEARMTQVAELILQGVDE 149
           YTE R+ ++A  ++  +++
Sbjct: 64  YTEIRLAKIAHELMADLEK 82


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSNEREP 92


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGDQ VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+++++ 
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            +L+ +D++ VDF   Y+  + EP V PS
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVLPS 101


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/104 (48%), Positives = 76/104 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           +DGDS A  RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 71/92 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 76/100 (76%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHG+ +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDE 100


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNIL 105


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNIL 105


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 68/89 (76%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           R+ G+V+GK HPHG+ ++YD+L R+AQP+
Sbjct: 76  RVTGDVMGKYHPHGNTAIYDALARMAQPW 104


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 75/100 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+ Q F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDE 100


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 102/171 (59%), Gaps = 6/171 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYD 170


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 74/102 (72%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+ +G D+  A KK+AR+VG+VIG  HPHGD + YD++VR+AQPF  R+ L+ GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           FG+IDGD AAA R+TE R+  +A  +   ++ + VDF D Y+
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYD 102


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           VG+V+GK HPHGDQS YD+LVRLAQ F  R
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ AEL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAELLL 87


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 63/80 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEA 134
           QGNFG++DGD  AA RYTEA
Sbjct: 61  QGNFGSMDGDPPAAMRYTEA 80


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ + E G+    ++KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR AQ F  RYPL+ G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 195/432 (45%), Gaps = 65/432 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R+++H        F  
Sbjct: 648  TYLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLHTC------FRR 700

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--- 121
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 701  NLKKDMKVVELAGHVSGMTAYHHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 760

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLAN 178
             GD A+A RY   R++  A  I    DE  +    TYNE+D    EP VF    P +L N
Sbjct: 761  GGDCASA-RYIYTRLSPFARKIFNTADEPLL----TYNEDDGKKIEPEVFMPVVPMILIN 815

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G  GI  G ++SIP++N +++      L+       E +  +  G    TG ++      
Sbjct: 816  GADGIGTGWSSSIPNYNPEDVVNNLKRLMAGQ--PTEPMQPWFRG---FTGEVV------ 864

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-L 297
                     GG R +    + E G     + +TE+P +       +K+ E+I A+++P  
Sbjct: 865  -------AVGGDRYKFSGIIRECGDKE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSF 915

Query: 298  LEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-------- 348
            ++D RD +    V  ++      LD   +   + +   +E +F L  ++ +         
Sbjct: 916  IKDYRDYNTHTKVHFII-----QLDEKHM--KVALTEGLEEKFKLTKSIATTNLVAFDPE 968

Query: 349  GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAII 407
            GR+ +   +D ILKE+   R +   RR  F++  + R +E L        + ID  + I 
Sbjct: 969  GRITKYATVDDILKEFYVVRLKYYERRKQFQLNDLQRELEKLSNQARFVQMIIDGKLVIS 1028

Query: 408  RNEDKPKPVMVS 419
            +   K KPV+++
Sbjct: 1029 K---KKKPVLIT 1037


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 23/266 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL+  ++   L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K A I G
Sbjct: 8   SLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASIAG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ S  ++   L   +   YP+  GQGNFG+     A++ RY  AR+++  
Sbjct: 68  GVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSKNF 127

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             + +  +   V      +EE   P  +    P +L N TSGIAVG AT I  H+ Q++ 
Sbjct: 128 YNLFKDTEYAPVH----PDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQDVK 183

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA  A+++  E    K    +  P+F   G +VE  E     Y L  G +++ +R  +E 
Sbjct: 184 EAVKAIVEGREPVAPK----VKYPEF--RGEVVELEEP--GKYEL-HGTYKMTSRTQME- 233

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKI 286
                    +TEIP Q    +   KI
Sbjct: 234 ---------ITEIPVQWNLEKYTSKI 250


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 102/171 (59%), Gaps = 6/171 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A   V E    S  +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQA---VYEYDNHS-NVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYD 170


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K A I G V    + HG
Sbjct: 17  LSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASIAGGVADYGYHHG 76

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + S  ++   L   +   YP+  GQGNFG+     A++ RY  AR+++    + +  +  
Sbjct: 77  EASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSKNFYNLFKDTEYA 136

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            V      +EE   P  +    P +L N TSGIAVG AT I  H+ Q++ EA  A+++  
Sbjct: 137 PVH----PDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQDVKEAVKAIVEGR 192

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E    K    +  P+F   G +VE  E     Y L  G +++ +R  +E          +
Sbjct: 193 EPVAPK----VKYPEF--RGEVVELEEP--GKYEL-HGTYKMTSRTQME----------I 233

Query: 271 TEIPYQVQKSRLIEKI 286
           TEIP Q    +   KI
Sbjct: 234 TEIPVQWNLEKYTSKI 249


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 64/79 (81%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 142 LILQGVDEDAVDFRDTYNE 160
            +L+ +++D VDF+  Y++
Sbjct: 61  EMLRDINKDTVDFQSNYDD 79


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RR+++AMSE+GL     FK+SAR VG+V+GK HPHGD + Y+++V LAQPF  
Sbjct: 8   DGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPFSY 67

Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           R PL+ GQG +G +D   S AA RYTE R++
Sbjct: 68  RGPLVDGQGFWGALDDPKSFAAMRYTEYRLS 98


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 1/94 (1%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+  M +MGL    A  KS+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R PL+ G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
            GNFG++D D  AA RYTEAR+   A  ++  +D
Sbjct: 61  HGNFGSLD-DGPAASRYTEARLAAPAMAMISSLD 93


>gi|260363423|ref|ZP_05776273.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
 gi|308111420|gb|EFO48960.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
          Length = 270

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++K GD         ++   + L
Sbjct: 1   KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFL 60

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            +DG++Y+L + +L S R  GE I   +++     I    + +     LV S  G  F+ 
Sbjct: 61  GSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDAGYGFVC 120

Query: 627 EESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           + +++++  R GK  + + +  ++   K V  +  D +  +    ++L+F I  +P++++
Sbjct: 121 KGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAK 180

Query: 684 GKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAG-RSYNRSENDLLGWLGKRGGVG 737
           GKG   + + + K     +V+   I   +G +    AG R       DL  + G+RG  G
Sbjct: 181 GKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGKRKLGLKPADLENFRGERGRRG 240

Query: 738 SLVPKGFPR 746
           SL+P+G  R
Sbjct: 241 SLLPRGLQR 249


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 130/217 (59%), Gaps = 4/217 (1%)

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           P QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 2   PSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 61

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL
Sbjct: 62  ALQTSFGINLLALVDGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGL 120

Query: 394 LIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            +A  ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E
Sbjct: 121 RVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEE 180

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             +L+    ++  +L +  +    I  E+ E+KE F+
Sbjct: 181 YQSLVKLIAELKDILANEYKVLEIIREELTEIKERFN 217


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVAELIL 144
           G  D   S AA RYTE+R+++ +EL+L
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYSELLL 87


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 193/431 (44%), Gaps = 63/431 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R+++H        F  
Sbjct: 778  TFLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLHTC------FRR 830

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 831  NLKKDMKVVELAGHVSGMTAYHHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 890

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYNE+D    EP VF    P +L NG
Sbjct: 891  GGDCASARYIYTRLSPFARKVFHSADEPLL----TYNEDDGKKIEPEVFMPVVPMILING 946

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N +++      L+       E +  +  G  F TG ++       
Sbjct: 947  ADGIGTGWSSSIPNYNPEDVVNNLKRLMAGE--PTEPMQPWFRG--F-TGEVVA------ 995

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    + E G     + +TE+P +       +K+ E+I A+++P  +
Sbjct: 996  -------VGGDRFKFSGIIRECGEKE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFI 1046

Query: 299  EDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D RD  +   V  ++      LD   +   + +   +E +F L   + +         G
Sbjct: 1047 KDYRDYNTHTKVHFII-----QLDEKHM--KVALTEGLEEKFKLTKTIATTNLVAFDPEG 1099

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIR 408
            R+ +   +D ILKE+   R +   RR  F++  + R +E L        + ID  + I +
Sbjct: 1100 RITKYATVDDILKEFFVVRLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISK 1159

Query: 409  NEDKPKPVMVS 419
               K KPV+++
Sbjct: 1160 ---KKKPVLIA 1167


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M  +  L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 60/70 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGN 120
           L+ GQGNFG+
Sbjct: 61  LVDGQGNFGS 70


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 24/285 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M       F K A I G 
Sbjct: 26  LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 85

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  ++   +A  +   YPL+ GQGNFG+     AAA RY  AR+     
Sbjct: 86  VADLGYHHGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRYIFARIGSNFA 145

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      + E   P  +    P +L NG SGIA G AT+I  H+   + +
Sbjct: 146 KVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGVSGIATGYATNILPHSFDSVKK 201

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L ++    ++  K    +  P+F   G +VE       SY + RG ++  +R  +   
Sbjct: 202 AVLQVLQEKRVTKPK----VAYPEF--RGEVVEIEPG---SYEI-RGTYKFTSRTQMH-- 249

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
                   +TEIPY+  +   + KI + +  K     +D  DE+ 
Sbjct: 250 --------ITEIPYKYDRETYVAKILDPLEDKGYITYDDDCDENG 286


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/76 (61%), Positives = 63/76 (82%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDE 149
            R+ ++A  ++  +++
Sbjct: 61  IRLAKIAHELMADLEK 76


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 165/353 (46%), Gaps = 62/353 (17%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HR
Sbjct: 1   MRIVIECK-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHR 58

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
           REV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P   K  +++R     
Sbjct: 59  REVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLG 118

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + LTE Q  AIL+LRL  L  LE  +I  E 
Sbjct: 119 NVAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEY 178

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      
Sbjct: 179 KQLLEEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDM 230

Query: 512 QAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++        + +      SA   KE D ++  L A+T D I
Sbjct: 231 EELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNI 290

Query: 564 LLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
           LL ST GK Y +    L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 291 LLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 343


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 165/372 (44%), Gaps = 58/372 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVY 95
            +R+IP + DG KP  R+++H        F    KK  ++V   G V G   + HGD S+ 
Sbjct: 682  QRSIPSVVDGLKPGQRKVLHTC------FRRNLKKDMKVVELAGHVSGMTAYHHGDVSLQ 735

Query: 96   DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
             ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  +    DE  
Sbjct: 736  QTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASARYIYTRLSPFARKVFHSADEPL 795

Query: 152  VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +    TYNE+D    EP VF    P +L NG  GI  G ++SIP++N +E+      L+ 
Sbjct: 796  L----TYNEDDGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEEVVNNLKRLMA 851

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                  E +  +  G    TG ++               GG R +    + E G     +
Sbjct: 852  GE--PTEPMQPWFRG---FTGEVVA-------------VGGDRFKFSGIIRECGEKE--V 891

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLM 326
             +TE+P +       +K+ E+I A+++P  ++D RD  +   V  ++      LD   + 
Sbjct: 892  EITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFII-----QLDEKHM- 945

Query: 327  ESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              + +   +E +F L   + +         GR+ +   +D ILKE+   R +   RR  F
Sbjct: 946  -KVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYYERRKQF 1004

Query: 379  RMQAIDRRVEIL 390
            ++  + R +E L
Sbjct: 1005 QLADLQRDLEKL 1016


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQSVYD+LVR+
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 102 AQPFVQRYPL 111
            Q F  RYPL
Sbjct: 62  VQDFSSRYPL 71


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 195/420 (46%), Gaps = 42/420 (10%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           LAYA+ T++ RAIP+L DGFKPV R +++   EM       F K A + G V    + HG
Sbjct: 37  LAYAIYTVENRAIPNLMDGFKPVQRFMVYRALEMAKGNHQKFHKLASVAGGVADAGYHHG 96

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + S  ++   +A  +   +P + GQGNFG+     AAA RY   R++     + + + E 
Sbjct: 97  ENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQEAAASRYIFCRISDNFRKVFKDI-EI 155

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA-LAL--- 206
           A    D   EE   P  +    P +L NG  GIA G +TSI  H+++ + E   LAL   
Sbjct: 156 APQHED---EEHLPPKHYLPVIPTVLLNGVRGIATGYSTSILPHSLESVIECTRLALQGK 212

Query: 207 IDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +D  PE++          P F   G IV++ +     Y L +G ++  ++          
Sbjct: 213 LDKEPEVAF---------PQF--NGNIVKTEDG---KYEL-QGVYKFTSK---------- 247

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL--DPD 323
             + ++EIPY   +++ +EK+ + +  K     +D   +     + V F K+  L  D  
Sbjct: 248 TQMYISEIPYSFDRAKYVEKVLDPLEDKGFITYDDDCSKHGFGFK-VKFRKDYKLPEDEG 306

Query: 324 LLMESIFMLSDMETRFPLNMNVLS-MGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           L+ E I     +  + P  + V+   G++  +      ++K ++  R++ +  R  F + 
Sbjct: 307 LMHEKIMRDFKLTEKVPQYIVVIDENGKLNDKFENASDLIKYFVEVRKKYVKGRIEFMIN 366

Query: 382 AIDR--RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +R  ++ I K + I  +N  E +   + + + K  + S+ S+ +   D +L + L  L
Sbjct: 367 KTERQFKLAIAKAMFIKTVNNGETVIKGKKKSELKEEL-SKISVFQGFEDQLLAMNLYHL 425


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 62/78 (79%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 20  VIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 79

Query: 142 LILQGVDEDAVDFRDTYN 159
            ++  ++++ VDF D Y+
Sbjct: 80  ELMADLEKETVDFVDNYD 97


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 138/292 (47%), Gaps = 38/292 (13%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM-TQVA 140
           V    + HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA RY  AR+ T  A
Sbjct: 68  VADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARIGTNFA 127

Query: 141 ELILQGVDEDAVDFRDT------YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++           ++DT       + E   P  +    P +L NG SGIA G AT+I  H
Sbjct: 128 KV-----------YKDTEYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPH 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +   + +A L ++    ++  K    +  P+F   G +VE       SY L RG ++  +
Sbjct: 177 SFDSVKKAVLQVLQEKRVTKPK----VAYPEFR--GDVVEIEPG---SYEL-RGTYKFTS 226

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           R  +           +TEIPY+  +   + K+ + +  K     +D  DE+ 
Sbjct: 227 RTQMH----------ITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENG 268


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 138/292 (47%), Gaps = 38/292 (13%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M       F K A I G 
Sbjct: 25  LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 84

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM-TQVA 140
           V    + HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA RY  AR+ T  A
Sbjct: 85  VADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARIGTNFA 144

Query: 141 ELILQGVDEDAVDFRDT------YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++           ++DT       + E   P  +    P +L NG SGIA G AT+I  H
Sbjct: 145 KV-----------YKDTEYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +   + +A L ++    ++  K    +  P+F   G +VE       SY L RG ++  +
Sbjct: 194 SFDSVKKAVLQVLQEKRVTKPK----VAYPEF--RGDVVEIEPG---SYEL-RGTYKFTS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           R  +           +TEIPY+  +   + K+ + +  K     +D  DE+ 
Sbjct: 244 RTQMH----------ITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENG 285


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPH
Sbjct: 6   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 65

Query: 90  GDQSVYDSLVRLAQPF--VQRYPLISGQG 116
           GD + Y+++V +AQPF  V R+ ++ G G
Sbjct: 66  GDSACYEAMVLMAQPFSTVIRWLMVRGTG 94


>gi|294626547|ref|ZP_06705145.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599114|gb|EFF43253.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 260

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
           A +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ + +T ++ 
Sbjct: 5   AAQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLTAVRSRSTHQVA 64

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            L +DG+AY+     L S RG+GE +                  D+  + ++ SS G  F
Sbjct: 65  FLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVLASSHGYGF 124

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEM 681
           +     +    + GK  L +++   +    +V+    D +  V     LL      +PE+
Sbjct: 125 VTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPEL 184

Query: 682 SRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVG 737
            +GKG   + +   K G    V    +  G T  + S  R+ + S  DL  ++G R   G
Sbjct: 185 DKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTYVGARASRG 244

Query: 738 SLVPKGF 744
           SL+P+G+
Sbjct: 245 SLLPRGW 251


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPH D + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           TE+R ++ AEL+L  + +  VD+   ++    EP + P++ PN+L
Sbjct: 61  TESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNIL 105


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 7   YKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 66

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           YTE+R+++++E++L  +++  VD++  ++   +EP   P+
Sbjct: 67  YTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA 
Sbjct: 1   AAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAM 60

Query: 130 RYTEARM 136
           RYTE RM
Sbjct: 61  RYTEIRM 67


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 63/84 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQG 116
           + Y+++V +A PF  R PL+ G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE RM+
Sbjct: 4   IVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRMS 63

Query: 138 QVAELILQGVDEDAV 152
           +VA  +L  ++++ V
Sbjct: 64  KVAHALLADLEKETV 78


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 60/70 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGN 120
           L+ GQGNFG+
Sbjct: 61  LVDGQGNFGS 70


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 154/297 (51%), Gaps = 28/297 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 7   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 65

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  L
Sbjct: 66  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 125

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F    D+ R     
Sbjct: 126 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF----DVPR----I 177

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 178 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 237

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           +    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L  ++ I+
Sbjct: 238 ESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINLQADEKIM 291


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 58/77 (75%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYT 132
           GNFG+IDGDSAAA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 GNIDG-DSAAAYRYTEARMTQVA 140
           G  D   S AA RYTE+R+++ A
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYA 83


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 154/298 (51%), Gaps = 28/298 (9%)

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q
Sbjct: 5   SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQ 63

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  
Sbjct: 64  KARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGR 123

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F    D+ R    
Sbjct: 124 LTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF----DVLR---- 175

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDS 550
             ++         + +I  E + V I++RG+I+ + S   +          A+   + D 
Sbjct: 176 ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF 235

Query: 551 LKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           ++    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L  ++ I+
Sbjct: 236 IESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINLQADEKIM 290


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 191/432 (44%), Gaps = 53/432 (12%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL TI  RAIP L DGFKPVHR  IH+     +  G  F+K A I G V    + HG
Sbjct: 14  LTFALYTIYSRAIPHLVDGFKPVHRFFIHS----AMQGGTGFQKVASIAGGVAMYGYHHG 69

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + SV ++L  +A  +    PL    G FG+       A RY + +++ + + I    D  
Sbjct: 70  ETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLSPIFKAIYMDGDLT 129

Query: 151 AVDFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            V        ED E   P  +    P +L NG SGIA   AT+IP H+ + +    +A +
Sbjct: 130 PV-------HEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPKSVVNGCIAYL 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           ++ + +++    Y  G    T G       +I  +Y L                 +G   
Sbjct: 183 NDKDFTLDLKYPYFKGEI--TDG-------TIYGTYEL-----------------QGKTK 216

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+TEIP +  + + I  + +L   +   ++   +D S ED R  +  K R     L  E
Sbjct: 217 LVITEIPVKYDRVKYIAILDKL---EEKGVIVSYKDLSKEDFRYEVTLK-REYANGLTRE 272

Query: 328 SIFM-LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ----A 382
            I      +E   P N+NV+  G++      + +LK+++  R  V  +R + R+Q    A
Sbjct: 273 KILKDFGLIENSNP-NINVIFEGKLYSYERPETLLKDFVDIRMNVYQQRINKRIQETKEA 331

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           +D+ +  +  +     + D +  + R+E       VS +   EN  + ++ + +  L   
Sbjct: 332 LDKALAKVAFIAQMVESPDSLRGLSRSEAVK---FVSTWIGCENHAEMLVAMNIYHLTTD 388

Query: 443 EEYQIKSELDNL 454
           E  +++ E + L
Sbjct: 389 ERKKLEDEAEEL 400


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 153/297 (51%), Gaps = 28/297 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F    D+ R     
Sbjct: 125 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF----DVPR----I 176

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 177 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 236

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           +    A+T D ++ ++  G     K Y  P G   S    G+A+  LI+L  ++ I+
Sbjct: 237 ESFFTANTHDTLMFVTDRGQLYWLKVYKXPEG---SRTAKGKAVVNLINLQADEKIM 290


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|238759144|ref|ZP_04620313.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
 gi|238702692|gb|EEP95240.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
          Length = 265

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 8/244 (3%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +  ++  EP+T+V+S  GW+RS K H +D S L +K GDS + A    +   ++ + + G
Sbjct: 3   EHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTG 62

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           ++Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   ++
Sbjct: 63  RSYALDPLTLPSARGQGEPLTGKLTPPPGAAIEQVLMAPDDQKLLMASDAGYGFVCTFND 122

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKG-- 686
           ++A  R GKT + +    K    +++ G  D +  +    ++L+F +  +PE+S+GKG  
Sbjct: 123 LVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKGNK 182

Query: 687 -VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            V + + +     D + +      +    +    R       DL  +  +RG  GS +P+
Sbjct: 183 IVSIPAAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLTLRPEDLQKFRAERGRKGSPLPR 242

Query: 743 GFPR 746
           G  R
Sbjct: 243 GLQR 246


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 99/172 (57%), Gaps = 6/172 (3%)

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           V  Y  G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  ++
Sbjct: 1   VXVYXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIK 56

Query: 300 DIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            I+DES   E V+IVL+      +   +M  +   +D E  F +NMN++ +   PQV  L
Sbjct: 57  XIQDESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDNRPQVKNL 116

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             IL +WL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN
Sbjct: 117 LDILNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRN 168


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 194/436 (44%), Gaps = 61/436 (13%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL TI  RAIP L DGFKPVHR  IH+ ++     G  F+K A I G V    + HG
Sbjct: 14  LTFALYTIYSRAIPHLVDGFKPVHRFFIHSAAKG----GTGFQKVASIAGGVAMYGYHHG 69

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + SV ++L  +A  +    PL    G FG+       A RY + +++ + + I   +DED
Sbjct: 70  ETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLSPLFKAIY--MDED 127

Query: 151 AVDFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
                 T   ED E   P  +    P +L NG SGIA   AT+IP H+   +    ++ +
Sbjct: 128 L-----TLPHEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPVSVLNGCVSYL 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +  + +++  L+Y   P F  G I      ++   Y L                 +G   
Sbjct: 183 NGKDFTLD--LKY---PHF-KGDI---ENGTMYGKYEL-----------------QGKTK 216

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+TEIP +  + + I  + +L   +    +   +D S ED R  +  K R     L  E
Sbjct: 217 LVITEIPVKYDRVKYISILDKL---EEKGYIVSYKDLSKEDFRYEITLK-REYANGLTRE 272

Query: 328 SIFM-LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            I      +E   P N+NV+  G++      + +LK+++  R  V         Q ID+R
Sbjct: 273 KILKDFGLIENSNP-NINVIFNGKLHSYERPETLLKDFVDIRIGVY-------QQRIDKR 324

Query: 387 V-EILKGLLIAYLNIDEIIAIIRNEDKPKPV-------MVSRFSLTENQVDAILNLRLRS 438
           + E  + L  A   +D I  +I   D  K +       +VS ++  EN  + ++ + +  
Sbjct: 325 IQETKEALDKALAKVDFIDQMIAQPDALKGLSRSEAVKLVSTWAGCENHAEILVAMNIYH 384

Query: 439 LRKLEEYQIKSELDNL 454
           L   E  +++ E + L
Sbjct: 385 LTTDERQKLEDEANEL 400


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 154/297 (51%), Gaps = 28/297 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F    D+ R     
Sbjct: 125 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKF----DVPR----I 176

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 177 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 236

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           +    A+T D ++ ++  G     K Y +P G   S    G+A+  LI+L  ++ I+
Sbjct: 237 ESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINLQADEKIM 290


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 199/431 (46%), Gaps = 63/431 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V+ ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 774  TFLDHSVEKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FRR 826

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 827  NLKKDMKVVELAGHVSGMTAYQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 886

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D    EP V+    P +L NG
Sbjct: 887  GQDCASARYIYTRLSPFARRMFHAADDPLL----TYNEDDGKKIEPEVYVPVVPLILING 942

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D+    ++ +  +  G  F TG +        
Sbjct: 943  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDSQ--PVKPMQPWFRG--F-TGEVTA------ 991

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ E+I A++ P  +
Sbjct: 992  -------LGGDRFKFSGIIKETGDKE--VEITELPIRTWTQDFKDKLEEIIKAEKTPSFI 1042

Query: 299  EDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D +D  +   V  V+      +D   +  ++     +E +F L+  + +         G
Sbjct: 1043 KDYKDYNTHTKVHFVI-----QMDEKNIKSAV--AEGLEEKFKLSKTIATTNLVAFDPEG 1095

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIR 408
            R+ +   +D ILKE+ A R +   RR  +++  + + ++ L        + ID  + I +
Sbjct: 1096 RITKYASVDDILKEFYAVRLKFYERRKQYQLSELQKELDKLTNQARFVQMIIDGDLVISK 1155

Query: 409  NEDKPKPVMVS 419
               K KPV+V+
Sbjct: 1156 ---KKKPVLVA 1163


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 57/68 (83%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 137 TQVAELIL 144
           T +AEL+L
Sbjct: 61  TPIAELLL 68


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 60/81 (74%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD+S+YD+LVR+AQP+  RYP
Sbjct: 63  GDRSIYDTLVRMAQPWSLRYP 83


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYR 130
            RYPL+ GQGNFG+   D  AA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQPF  RY     QGNF +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 1   DTIVRMAQPFSLRY-CWRWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 58/69 (84%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQ 145
           T++   +L+
Sbjct: 61  TKITLELLR 69


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
          +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77 RIVGEVIGKLHPHGDQSVYDS 97
          R+VG+VIGK HPHGD +VYD+
Sbjct: 68 RVVGDVIGKYHPHGDSAVYDT 88


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 10  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 69

Query: 133 EARM 136
           EARM
Sbjct: 70  EARM 73


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+YD+LVR+AQP+  RYP
Sbjct: 63  GDSSIYDTLVRMAQPWSLRYP 83


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 10  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 69

Query: 133 EARMTQVA 140
           EARM+++A
Sbjct: 70  EARMSKIA 77


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 71/103 (68%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  A
Sbjct: 4   FDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPA 63

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           A RYTEAR++++A  +LQ ++++ V F   +++ + EP   P+
Sbjct: 64  AMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 153/296 (51%), Gaps = 27/296 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 10  EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQK 68

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  L
Sbjct: 69  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 128

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F    D+ R     
Sbjct: 129 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF----DVPR----I 180

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 181 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 240

Query: 552 KIALHAHTTDRILLLSTDG----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           +    A+T D ++ +  +     K Y +P G   S    G+A+  LI+L  ++ I+
Sbjct: 241 ESFFTANTHDTLMFVLIEDSFMVKVYKIPEG---SRTAKGKAVVNLINLQADEKIM 293


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 1/97 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            D   S AA RYTEA+++  +EL+L  + +   +++D
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQD 97


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
          ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AFK
Sbjct: 8  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFK 67

Query: 74 KSARIVGEVIG 84
          K A+IVGEV+G
Sbjct: 68 KCAKIVGEVMG 78


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 183/398 (45%), Gaps = 53/398 (13%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  +S    + +  + ++++   +R+IP + DG KP  R++++A       F  
Sbjct: 650  TYLDHSVSKISYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYAC------FRR 702

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HG+ S+  ++V LAQ FV       +   GNFG+    
Sbjct: 703  NLKKDMKVVELAGLVSGMTAYQHGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 762

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  I    DE  +    TYNE+D    EP  +    P +L NG
Sbjct: 763  GSDCASARYIYTRLSPFARKIFHTADEPLL----TYNEDDGKKIEPETYMPVVPMVLING 818

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N +++      L+      IE +  +  G    TG ++       
Sbjct: 819  ADGIGTGWSSSIPNYNPEDVVNNLKRLMKGE--PIEPMQPWFRG---FTGEVV------- 866

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ ++I A+++P  +
Sbjct: 867  ------NMGGDRFKFSGIIKETGDKE--VEITELPIRTWTQDFKDKLEDIIKAEKVPSFI 918

Query: 299  EDIRDESAED-VRIVLFPKNRSLDPDLL--MESIFMLSDMETRFPLNMNVLSM---GRVP 352
            +D +D +  D V  V+    +++   L   +E  F L    T+     N+++    GR+ 
Sbjct: 919  KDYKDYNTHDKVHFVIQLDEKNMKAALSEGLEEKFKL----TKSIATSNLVAFDPEGRIT 974

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            +   +D ILKE+   R +   RR   ++  + + +E L
Sbjct: 975  KYATVDDILKEFFTVRLKYYERRKQHQLSELQKELEKL 1012


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RI+G+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQ 145
           T++   +L+
Sbjct: 61  TKITLELLR 69


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 1/81 (1%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ 
Sbjct: 4   QRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLVD 63

Query: 114 GQGNFGNIDG-DSAAAYRYTE 133
           GQGN+G  D   S AA R+TE
Sbjct: 64  GQGNWGAPDDPKSFAAMRFTE 84


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 61/77 (79%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK
Sbjct: 18  MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77

Query: 86  LHPHGDQSVYDSLVRLA 102
            HPHGD S+Y+++VR+A
Sbjct: 78  YHPHGDSSIYEAMVRMA 94


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTE+R+++ +EL+
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELL 83


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 55/64 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEAR 135
           TEA+
Sbjct: 62  TEAQ 65


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 59/81 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+YD+LVR+AQP+  RYP
Sbjct: 63  GDISIYDTLVRMAQPWSLRYP 83


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEA 134
           TEA
Sbjct: 61  TEA 63


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEA 134
           TEA
Sbjct: 62  TEA 64


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEA 134
           TEA
Sbjct: 62  TEA 64


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEA 134
           TEA
Sbjct: 62  TEA 64


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEAR 135
           TEA+
Sbjct: 62  TEAQ 65


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 16/244 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P+V  L  +L  +L HR+ V+ RR+ + +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKVFSLIELLNLFLNHRKTVIIRRTIYELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N  D P  K +++ +F L+E Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I +EL  LLAE E++D +L S     N I  E++E++  F    D+ R     
Sbjct: 125 TGLEREKIDNELRELLAEIERLDQILKSETLLENLIKDELKEIRTKF----DVPR----I 176

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++         + +I  E + V I++RG+I+ + S   +      K G   K+A+  + 
Sbjct: 177 TQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQYEKQ----KRGGKGKVAVTTYD 232

Query: 560 TDRI 563
            D I
Sbjct: 233 DDFI 236


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/61 (70%), Positives = 53/61 (86%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTE
Sbjct: 4   KSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 63

Query: 134 A 134
           A
Sbjct: 64  A 64


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KP  RRI++AMSE+GL+  + FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFGNIDG-DSAAAYR 130
           PL+ GQGN+G  D   S AA R
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMR 82


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 96/153 (62%), Gaps = 4/153 (2%)

Query: 246 GRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRA+  VE +  R    I+VTEIPYQV K++++EKIAEL+  KR+  + DIRDE
Sbjct: 4   GRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDIRDE 63

Query: 305 SAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S  D +R+V+  K   L P +++  ++  + ++  F + M  L   R P+++ L  IL  
Sbjct: 64  SDRDGIRVVIELKKGEL-PPVILNQLYKHTQLQNTFGVIMLALVHNR-PEILTLKQILVA 121

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           +L HRREV+ RR+++ ++  + R  I++GL IA
Sbjct: 122 FLEHRREVVIRRTAYELRKAEERAHIVEGLNIA 154


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++
Sbjct: 1   DRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKE 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            VDF+  +++   EP V P+K P LL NG
Sbjct: 61  TVDFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 7/196 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++++ L   + E Y  Y + T+ +RAIP L+DG KP  RRI+  + +   +      K 
Sbjct: 8   SMESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWK---NQSKGLMKV 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQ--PFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           +   G V+  LHPHG  SV  ++V +AQ   F   YPLI  +G FG     S AA RY E
Sbjct: 65  SSATGLVLT-LHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPAASRYIE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ ++++++L   D D V+    Y+E+  EPV    K P +L NG  GI  G ++ IPS
Sbjct: 124 CKLGKISQILLFD-DMDQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGFSSVIPS 182

Query: 194 HNVQEICEAALALIDN 209
            + +E+  + ++ +++
Sbjct: 183 FSHKEVINSMISFLES 198


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 58/371 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HGD S+  
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGMTAYQHGDASLQQ 729

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  +    D+  +
Sbjct: 730  TIVGLAQNFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRVYHSHDDPLL 789

Query: 153  DFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYNE+D E   P ++    P +L NGT GI  G ++SIP++N ++I E    ++D 
Sbjct: 790  ----TYNEDDGEKIEPEIYMPVVPMILVNGTDGIGTGWSSSIPNYNPEDIVENLRRMMDG 845

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
             EI  + +  +  G      G + +             GG R +    ++E G     + 
Sbjct: 846  EEI--KPMQPWFRG----FNGEVTD------------MGGDRYKFSGIIKETGDKE--VE 885

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLME 327
            +TE+P +       +K+ ++I A++ P  ++D +D  +   V  V+      +D   +  
Sbjct: 886  ITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHHKVHFVI-----QMDEKHMTA 940

Query: 328  SIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +  +   +E +F L  ++ +         GR+ +   +D ILKE+   R +   RR  ++
Sbjct: 941  A--LSEGLEEKFKLTKSIATSNLVAFDPEGRITKYAGVDDILKEFYTIRLKYYERRKQYQ 998

Query: 380  MQAIDRRVEIL 390
            +  + R ++ L
Sbjct: 999  LSEMQRELDRL 1009


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 59/81 (72%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+Y++LVR+AQP+  RYP
Sbjct: 63  GDSSIYNTLVRMAQPWSLRYP 83


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEA 134
           TEA
Sbjct: 62  TEA 64


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 76/108 (70%), Gaps = 2/108 (1%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +N +D+
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF--AWNFDDT 106


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELIL 144
            D   S AA RYTEA+++  +EL+L
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLL 85


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 55/65 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KS+RIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEARM 136
           TEA +
Sbjct: 62  TEAHL 66


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 64  EARMSKIALEMLR 76


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 2   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 61

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 62  EARMSKIALEMLR 74


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 193/431 (44%), Gaps = 63/431 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++      + F  
Sbjct: 774  TFLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVIDGLKPGQRKVLY------VSFRR 826

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 827  NLKKDMKVVELAGHVSGMTAYQHGDASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQG 886

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYN +D    EP  +    P LL NG
Sbjct: 887  GQDCASARYIYTRLSPFARRMFHPADEPLL----TYNVDDGKQIEPENYVPVVPLLLING 942

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D     I+ +  +  G +     I        
Sbjct: 943  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGE--PIKPMQPWFRGFNGEVTAI-------- 992

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ E+I A + P  +
Sbjct: 993  --------GGDRFKFSGIIKEAGDKE--VEITELPIRTWTQDFKDKLEEIIKADKTPSFI 1042

Query: 299  EDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D +D +    VR V+      +D   +  +  +   +E +F L+  + +         G
Sbjct: 1043 KDYKDYNTHTKVRFVI-----QMDEKHMQSA--LSEGLEEKFKLSKTIATTNLVAFDPEG 1095

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIR 408
            R+ +   +D ILKE+   R +   RR  +++  + R ++ L        + ID  + I +
Sbjct: 1096 RITKYASVDDILKEFFTVRLKFYERRKQYQLSELQRELDKLSNQARFVQMIIDGALVISK 1155

Query: 409  NEDKPKPVMVS 419
               K KPV+++
Sbjct: 1156 ---KKKPVLIA 1163


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 196/426 (46%), Gaps = 53/426 (12%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 702  TFLDHSVDKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FRR 754

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              +K  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 755  NLRKDMKVVELAGHVSGMTAYQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 814

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D    EP V+    P +L NG
Sbjct: 815  GQDCASARYIYTRLSPFARRVFHAADDPLL----TYNEDDGKKIEPEVYVPVVPMILING 870

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D     ++ +  +  G  F TG +        
Sbjct: 871  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQ--PVKPMQPWFRG--F-TGEVTA------ 919

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ E+I A++ P  +
Sbjct: 920  -------LGGDRFKFSGIIKETGDKE--VEITELPIRTWTQDFKDKLEEIIKAEKTPSFI 970

Query: 299  EDIRDESAE-DVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLS-MGRVPQV 354
            +D +D +    V  V+    ++L    +  +E  F LS  +T    N+      GR+ + 
Sbjct: 971  KDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLS--KTIATTNLVAFDPEGRITKY 1028

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIRNEDKP 413
              +D ILKE+ A R +   RR  +++  + + ++ L        + ID  + I +   K 
Sbjct: 1029 ASVDDILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISK---KK 1085

Query: 414  KPVMVS 419
            KP +V+
Sbjct: 1086 KPALVA 1091


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 106 VQRY 109
             RY
Sbjct: 61  SLRY 64


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 46/355 (12%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL TI  RAIP L DGFKPVHR  +H+ ++     G+ F+K A I G V    + HG
Sbjct: 14  LTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKG----GSGFQKVASIAGGVAIYGYHHG 69

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + SV ++L  +A  +    PL    G FG+       A RY   +++ + + I   +DED
Sbjct: 70  ETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSPLFKAIY--MDED 127

Query: 151 AVDFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
                 T   ED E   P  +    P +L NG  GIA G AT+IP H+   +    ++ +
Sbjct: 128 L-----TIPHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVSVLNGCVSYL 182

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +  + +++  L+Y   P F   G IV+   ++   Y L                 +G   
Sbjct: 183 NGKDFTLD--LKY---PQF--KGDIVDG--TMYGKYEL-----------------QGKTK 216

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           +V+TEIP +  + + I  + +L   +    +   +D S ED R  +  K R     L  E
Sbjct: 217 LVITEIPVKYDRVKYIAILDKL---EEKGCIVSYKDLSKEDFRYEITLK-REYANGLTHE 272

Query: 328 SIFM-LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            I      +E   P N+NV+  G++      + +LK+++  R  V  +R   R+Q
Sbjct: 273 KILKDFGLIENSNP-NINVIFNGKLHSYERPETLLKDFVDIRMTVYQQRIEKRIQ 326


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 2   KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 61

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 62  EARMSKIALEMLR 74


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 64  EARMSKIALEMLR 76


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTEA++++ AE++
Sbjct: 61  DDPKSFAAMRYTEAKLSKFAEIL 83


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 71/99 (71%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF 99


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 58/82 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KP  RRI++AM  + L  G   +K A+I G+  G  HPHG+Q +Y +LVR+AQP++ RY 
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 111 LISGQGNFGNIDGDSAAAYRYT 132
           L+ GQGNFG++DGD  AA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 196/426 (46%), Gaps = 53/426 (12%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 702  TFLDHSVDKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FRR 754

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              +K  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 755  NLRKDMKVVELAGHVSGMTAYQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQG 814

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D    EP V+    P +L NG
Sbjct: 815  GQDCASARYIYTRLSPFARRVFHAADDPLL----TYNEDDGKKIEPEVYVPVVPMILING 870

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D     ++ +  +  G  F TG +        
Sbjct: 871  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQ--PVKPMQPWFRG--F-TGEVTA------ 919

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ E+I A++ P  +
Sbjct: 920  -------LGGDRFKFSGIIKETGDKE--VEITELPIRTWTQDFKDKLEEIIKAEKTPSFI 970

Query: 299  EDIRD-ESAEDVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLS-MGRVPQV 354
            +D +D  +   V  V+    ++L    +  +E  F LS  +T    N+      GR+ + 
Sbjct: 971  KDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLS--KTIATTNLVAFDPEGRITKY 1028

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIRNEDKP 413
              +D ILKE+ A R +   RR  +++  + + ++ L        + ID  + I +   K 
Sbjct: 1029 ASVDDILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISK---KK 1085

Query: 414  KPVMVS 419
            KP +V+
Sbjct: 1086 KPALVA 1091


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 59/83 (71%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R +P + DG  PV RRI++AMS +G++  A FK SAR VG+ +GK HPHGD + Y+ + 
Sbjct: 8   DRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDMF 67

Query: 100 RLAQPFVQRYPLISGQGNFGNID 122
            +AQPF  RYPL+ GQGN+G  D
Sbjct: 68  LMAQPFSYRYPLVDGQGNWGAPD 90


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 166/378 (43%), Gaps = 49/378 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R+I+ A  +  L       + A  V E     + HG+QS+Y ++  
Sbjct: 688  RSIPSIVDGLKPSQRKILFACLKRDLKDEIKVAQLAGYVSE--HSAYHHGEQSLYGTITS 745

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +AQ FV     PL+   G FG     GD AA+ RY   R+ ++  LI    D+  +D   
Sbjct: 746  MAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYTRLNKLTRLIFLKEDDQILD--- 802

Query: 157  TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
             Y EED    EP  +    P LL NG  G+  G +TSIPS N        + LID+  I 
Sbjct: 803  -YQEEDGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSFN-------PIDLIDSLNIL 854

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLG----RGGFRVRAR-----WCVEEVGRG 264
            ++   E I     P+  +     +  +E    G    +G F++++R     + + E+  G
Sbjct: 855  LDSNAENIGNVKLPSLDMWARGFKGKIEMNDSGKFISKGIFKMKSRGDSIEFDISELPIG 914

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             W         +  KS L   + + +I  +I    +   E++    I +       DPD 
Sbjct: 915  EWT--------ENYKSHLQSLVKKGLIKSKIT---ERNTENSVGFTIAIN------DPDE 957

Query: 325  LMESIFMLSDMETRFPL-NMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
              ES      +E  F L NM V S    + Q   ++ I+K++   R     +R S  M+ 
Sbjct: 958  FSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSYYHQRKSHLMKQ 1017

Query: 383  IDRRVEILKGLLIAYLNI 400
            +++++ IL    + +LN 
Sbjct: 1018 LEKQIRILSN-KVKFLNF 1034


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 71/99 (71%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF 99


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 55/65 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+ VYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEARM 136
           TEA++
Sbjct: 62  TEAQI 66


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEAR 135
           TEA+
Sbjct: 62  TEAQ 65


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEAR 135
           TEA+
Sbjct: 62  TEAQ 65


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 170/371 (45%), Gaps = 58/371 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HGD S+  
Sbjct: 736  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGMTAYQHGDVSLQQ 789

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 790  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRIFHASDEPLL 849

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP V+    P +L NG  GI  G ++SIP++N +++ +    L++ 
Sbjct: 850  ----TYNVDDGKTIEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNG 905

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
             EI  + +  +  G  F TG +      SI        GG R +    ++E G     + 
Sbjct: 906  EEI--KPMQPWFRG--F-TGEVT-----SI--------GGDRFKFSGIIKETGEKE--VE 945

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRSLDPDLLME 327
            +TE+P +       +K+ ++I A++ P  ++D +D +    V  V+      +D   L  
Sbjct: 946  ITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVI-----QMDEKHLKS 1000

Query: 328  SIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            ++     +E +F L   + +         GR+ +   +D ILKE+ A R +   RR  ++
Sbjct: 1001 AV--EEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAVRLKYYERRKQYQ 1058

Query: 380  MQAIDRRVEIL 390
            +  + + +E L
Sbjct: 1059 LNEMQKELEKL 1069


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1061

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 203/435 (46%), Gaps = 59/435 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DGFKP  R++I++  +  L       + +  V E     + HG+ S+  ++V
Sbjct: 650  ERSIPSVVDGFKPSQRKVIYSAFKRNLTTDVKVAQFSGYVAE--HSAYHHGEASLQGTIV 707

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ +V       +  +G FG+    G   A+ RY   ++      +    D++ + + 
Sbjct: 708  NLAQDYVGSNNINWLLPEGQFGSRLQGGKDHASARYIYMKLNPQTRQVFVDTDDNLLKY- 766

Query: 156  DTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
              Y++ D  EP  +    P++L NG+SGI  G +T+IPS+N ++I +    L     IS 
Sbjct: 767  -MYDDGDKIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRL-----ISG 820

Query: 215  EKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            E L+E  + P +    G I+E+   +     + +G +    +            IVV+E+
Sbjct: 821  EDLVE--MKPWYKGFKGKIMETSPGVY----VTKGLYMPNGK-----------TIVVSEL 863

Query: 274  PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---LLMESIF 330
            P         E +  L+  K   ++ D R++ ++    VLF  +   +P+   L +E+  
Sbjct: 864  PIGKWTQDYKEHLDGLLEKK---IISDFREKHSD--TDVLFEIDFVGNPNIDILKLETTI 918

Query: 331  MLSDMETRFPLNMNVLSMGRVPQV-MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              ++M    P        G++ +   PLD I++EW   R+++  +R ++ ++ +  R  I
Sbjct: 919  RSTNMHAFDP-------SGKIKKYDTPLD-IIREWFGVRKDLYVKRKAYLLEDLTHRTNI 970

Query: 390  L--KGLLIAYLNIDEIIAIIRNEDKPKPVMVS-RFSLTENQVDAILNLRLRSLR------ 440
               K   I  +N DEII   ++E      +   +F   +++ D +LN+R+ SL       
Sbjct: 971  AQNKHRFITMVNNDEIIINKKHESVISAELEKLKFYKVDDKYDYLLNMRISSLTLERAEE 1030

Query: 441  -KLEEYQIKSELDNL 454
             K E  +++ ELD+L
Sbjct: 1031 LKRESVKLEKELDDL 1045


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 76/109 (69%), Gaps = 2/109 (1%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+  
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +N +D+
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF--AWNFDDT 107


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELIL 144
            D   S AA RYTEA+++  +EL+L
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLL 85


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 68

Query: 133 EARMTQVA 140
           EARM+++A
Sbjct: 69  EARMSKIA 76


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 58/81 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+Y +LVR+AQP+  RYP
Sbjct: 63  GDSSIYHTLVRMAQPWSLRYP 83


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 181/401 (45%), Gaps = 59/401 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++        F  
Sbjct: 670  TFLDHSVSKISYTDFINKELILFSMAD-NVRSIPSVVDGLKPGQRKVLYTC------FRR 722

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 723  NLKKDMKVVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQG 782

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D E   P ++    P +L NG
Sbjct: 783  GSDCASARYIYTRLSPFARRVFHAHDDPLL----TYNEDDGEKIEPEIYVPVVPMILVNG 838

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D  E          + P F   G   E  +  
Sbjct: 839  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRP-------MQPWFR--GFTGEVTDV- 888

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ ++I A++ P  +
Sbjct: 889  --------GGDRFKFSGIIKETGEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFI 938

Query: 299  EDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D +D +    V  V+      LD   +  +  +   +E +F L+  V +         G
Sbjct: 939  KDYKDYNTHTKVHFVI-----QLDEKNMKSA--LSEGLEEKFKLSKTVATTNLVAFDPEG 991

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            R+ +   +D ILKE+  +R +   +R  +++  + + ++ L
Sbjct: 992  RITKYATVDDILKEFYTYRLKFYEKRKQYQLSQLQKELDKL 1032


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 58/81 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+Y +LVR+AQP+  RYP
Sbjct: 63  GDSSIYGTLVRMAQPWSLRYP 83


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 59/73 (80%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 64  EARMSKIALEMLR 76


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 194/441 (43%), Gaps = 63/441 (14%)

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES +D   ++    R    ++++ +++  + ++  F +NM  L  G+ P++M L  I
Sbjct: 2   LRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDI 60

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           +  ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P   K  +
Sbjct: 61  ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAAL 120

Query: 418 VSR----------------------------------FSLTENQVDAILNLRLRSLRKLE 443
           +SR                                  + LTE Q  AIL+LRL+ L  LE
Sbjct: 121 ISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLE 180

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  E   LL +  ++  +L S  +    I  E+  +++ F      G  R T    +
Sbjct: 181 HEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITAN 234

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIAL 555
            AD     + +I +E + V +S++G+++        + +      SA   KE D +   L
Sbjct: 235 SADINI--EDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 292

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YD 609
            A+T D IL  S+ G+ Y +    L  + RG  G  I  L+ L  N+ I TA +    Y+
Sbjct: 293 VANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYE 351

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
               + + ++ G       +E       G   + ++  +++  V   +G D V +     
Sbjct: 352 EGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAG 411

Query: 669 KLLIFSIDQIPEMSR-GKGVR 688
           K++ F  D +  M R   GVR
Sbjct: 412 KVVRFKEDAVRAMGRTATGVR 432


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 3   YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 62

Query: 132 TEA 134
           TEA
Sbjct: 63  TEA 65


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 60/73 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 4   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 63

Query: 133 EARMTQVAELILQ 145
           EARM+++A  +L+
Sbjct: 64  EARMSKIALEMLR 76


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 61/78 (78%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+    ++  A +KSAR+VG+VIGK +PHGD +VYD++V +AQPF QRY L+ GQGNF
Sbjct: 3   YAMNIKANEWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGNF 62

Query: 119 GNIDGDSAAAYRYTEARM 136
           G IDGDSAAA R TE R+
Sbjct: 63  GCIDGDSAAAVRKTELRL 80


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 68

Query: 133 EARMTQVA 140
           EARM+++A
Sbjct: 69  EARMSKIA 76


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 58/81 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
            D S+YD+LVR+AQP+  RYP
Sbjct: 63  CDSSIYDTLVRMAQPWSLRYP 83


>gi|71042520|pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-Terminal Domain
 gi|71042521|pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-Terminal Domain
          Length = 256

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 2/174 (1%)

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y +  
Sbjct: 2   EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDP 61

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R 
Sbjct: 62  ITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA 121

Query: 638 GKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           GK  + +     +   +V++   D +  + +  ++L+F +  +P++S+GKG ++
Sbjct: 122 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 175


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 18/233 (7%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I+ A  +  L      
Sbjct: 777  VDHSIKELSYSDFINKELVHYSWAA-NHRSIPSVMDGLKPGQRKILFACFKRNLTHEIKV 835

Query: 73   KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAA 128
             + +  V E     + HG+QS+  ++V++AQ FV     PLIS  G FG   + GD +A+
Sbjct: 836  AQLSGYVAEHTA--YHHGEQSLSSTIVKMAQDFVGSNNIPLISQGGQFGTRLMGGDDSAS 893

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             RY   ++ Q+  LI   +DE++++F +   E   +P  +    P +L NG+SGI VGM+
Sbjct: 894  PRYIFTKLNQITRLIYNDLDEESLNFLEEEGES-IQPSYYIPIIPMILVNGSSGIGVGMS 952

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEY---------IIGPDFPTGGII 232
             S+P ++  ++ E  L  + N +  ++KL+ +         I G  F T G+I
Sbjct: 953  NSVPLYSPIDLIEYLLLKLSN-QRQMKKLIPWYRGFKGNIVISGKSFKTSGLI 1004


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 170/371 (45%), Gaps = 58/371 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HGD S+  
Sbjct: 814  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGMTAYQHGDISLQQ 867

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 868  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRIFHASDEPLL 927

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP V+    P +L NG  GI  G ++SIP++N +++ +    L++ 
Sbjct: 928  ----TYNVDDGKTIEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNG 983

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
             EI  + +  +  G  F TG +      SI        GG R +    ++E G     + 
Sbjct: 984  EEI--KPMQPWFRG--F-TGEVT-----SI--------GGDRFKFSGIIKETGEKE--VE 1023

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLME 327
            +TE+P +       +K+ ++I A++ P  ++D +D  +   V  V+      +D   L  
Sbjct: 1024 ITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVI-----QMDEKHLKS 1078

Query: 328  SIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            ++     +E +F L   + +         GR+ +   +D ILKE+ A R +   RR  ++
Sbjct: 1079 AV--EEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAVRLKYYERRKQYQ 1136

Query: 380  MQAIDRRVEIL 390
            +  + + +E L
Sbjct: 1137 LNEMQKELEKL 1147


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 170/371 (45%), Gaps = 58/371 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HGD S+  
Sbjct: 809  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGMTAYQHGDISLQQ 862

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 863  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRIFHASDEPLL 922

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP V+    P +L NG  GI  G ++SIP++N +++ +    L++ 
Sbjct: 923  ----TYNVDDGKTIEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNG 978

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
             EI  + +  +  G  F TG +      SI        GG R +    ++E G     + 
Sbjct: 979  EEI--KPMQPWFRG--F-TGEVT-----SI--------GGDRFKFSGIIKETGEKE--VE 1018

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLME 327
            +TE+P +       +K+ ++I A++ P  ++D +D  +   V  V+      +D   L  
Sbjct: 1019 ITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVI-----QMDEKHLKS 1073

Query: 328  SIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            ++     +E +F L   + +         GR+ +   +D ILKE+ A R +   RR  ++
Sbjct: 1074 AV--EEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAVRLKYYERRKQYQ 1131

Query: 380  MQAIDRRVEIL 390
            +  + + +E L
Sbjct: 1132 LNEMQKELEKL 1142


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 56/67 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 8   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 67

Query: 133 EARMTQV 139
           EARM+++
Sbjct: 68  EARMSKI 74


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 58/81 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  HPH
Sbjct: 3   YIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYP 110
           GD S+Y +LVR+AQP+  RYP
Sbjct: 63  GDSSIYYTLVRMAQPWSLRYP 83


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 61/399 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++        F  
Sbjct: 765  TFLDHSVSKISYTDFINKELILFSMAD-NVRSIPSVVDGLKPGQRKVLYTC------FRR 817

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 818  NLKKDMKVVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQG 877

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D E   P ++    P +L NG
Sbjct: 878  GSDCASARYIYTRLSPFARRVFHAHDDPLL----TYNEDDGEKIEPEIYVPVVPMILVNG 933

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D  E     +  +  G  F TG +        
Sbjct: 934  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEET--RPMQPWFRG--F-TGEVT------- 981

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
                    GG R +    ++E G     + +TE+P +       +K+ ++I A++ P   
Sbjct: 982  ------DVGGDRFKFSGIIKETGEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSF- 1032

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------GRV 351
             I+D    +    L  KN        M+S  +   +E +F L+  V +         GR+
Sbjct: 1033 -IKDYKDYNTHTKLDEKN--------MKSA-LSEGLEEKFKLSKTVATTNLVAFDPEGRI 1082

Query: 352  PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +   +D ILKE+  +R +   +R  +++  + + ++ L
Sbjct: 1083 TKYATVDDILKEFYTYRLKFYEKRKQYQLSQLQKELDKL 1121


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY+++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEA 134
           TEA
Sbjct: 61  TEA 63


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 158/373 (42%), Gaps = 69/373 (18%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +    I  RA+P L DG KP  R ++++  +        FKK+A + G +    +PHG+ 
Sbjct: 19  FTFYVIVNRALPSLIDGLKPSQRFVLYSAIKTC---QCGFKKNAYLCGVLSDYGYPHGET 75

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S +D   ++A  +   YP++ G+GNFG+     AA  RY   ++                
Sbjct: 76  SAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIFCKLNS-------------- 121

Query: 153 DFRDTYNEED----------SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +F D + +ED          S P  +    P +L NG  GIA   AT+IP H++  + + 
Sbjct: 122 NFHDIFKDEDLLLDNEIVSYSIPKFYLPVIPFVLLNGVKGIASAYATNIPPHDIHSVIDE 181

Query: 203 ALALI-----DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
            +  +     DNP++     +  +  PD                             +W 
Sbjct: 182 CVKYVKTGKCDNPKVKYPSFIGKVNTPD---------------------------NEQWT 214

Query: 258 VEEVG--RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            E V   +G   + + +IP+   + + +    +LI + +I   ++I  E     R+ L  
Sbjct: 215 NEGVYELQGKTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGDFTFRVTL-- 272

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                D D   E+I  ++  + R  +N  ++++G    ++  +  L+ +  H RE++   
Sbjct: 273 ---KRDFDTSHENI--MAKFDLRENINPTLVTIGPYSNMVTQEMDLRIY-KHSRELIADF 326

Query: 376 SSFRMQAIDRRVE 388
            ++R+  +D+R++
Sbjct: 327 INYRLPIVDQRIQ 339


>gi|269967411|ref|ZP_06181471.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269827999|gb|EEZ82273.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 277

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 502 VSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           V RA+ KA  ++ ++  EPITVV+S +GWIR  K H VD   L++K GD         + 
Sbjct: 2   VERAEAKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNYKSGDKYLAHARGKSN 61

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
              + L +DG++Y+L + +L S R  GE I   +++     I    + +     LV S  
Sbjct: 62  QPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDA 121

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           G  F+ + +++++  R GK  + + +  ++   K +  +  D +  +    ++L+F I  
Sbjct: 122 GYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKD 181

Query: 678 IPEMSRGKGVRL 689
           +P++++GKG ++
Sbjct: 182 LPQLAKGKGNKI 193


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 34/259 (13%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+ T+++RAIP++ DG KPVHR +++   ++         K A + G V    + HG+ 
Sbjct: 18  YAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGGVADAGYHHGEG 77

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S  D+   +A  +   +P + G+GNFG+     AAA RY   R+++    + +  DE+  
Sbjct: 78  SAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENFSKVFK--DENVA 135

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              +  + E   P  +    P +L NG  GIA G AT+I  H+++ + E     ++    
Sbjct: 136 PVHE--DPEHKPPRFYLPVIPVVLLNGVEGIATGYATNILPHSIKSVIECTRQALNGVVD 193

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG-----RGGFRVRARWCVEEVGRGSWC 267
             E  +EY   P F +G I           YR G      G +++ ++  +E        
Sbjct: 194 IKEPSVEY---PKF-SGKI-----------YRDGPKCELHGTYKITSKTQME-------- 230

Query: 268 IVVTEIPYQVQKSRLIEKI 286
             +TEIPY   +++ +EK+
Sbjct: 231 --ITEIPYSFDRAKYVEKV 247


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL+  A FKKSAR VG+V+GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTEARMTQVAELI 143
           D   S AA RYTE+R+++ +EL+
Sbjct: 61  DDPKSFAAMRYTESRLSKYSELL 83


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
          Length = 1062

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 202/434 (46%), Gaps = 57/434 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DGFKP  R++I++  +  L       + +  V E     + HG+ S+  ++V
Sbjct: 650  ERSIPSVVDGFKPSQRKVIYSAFKRNLTTDVKVAQFSGYVAE--HSAYHHGEASLQGTIV 707

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ +V       +  +G FG+    G   A+ RY   ++      +    D++ + + 
Sbjct: 708  NLAQDYVGSNNINWLLPEGQFGSRLQGGKDHASARYIFTKLNPQTRQVFVDTDDNLLKY- 766

Query: 156  DTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
              Y++ D  EP  +    P++L NG+SGI  G +T+IPS+N ++I +    L     I+ 
Sbjct: 767  -LYDDGDKIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRL-----IAG 820

Query: 215  EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            E L+E  + P +   G   +  E+  + Y + +G +    +            IVV+E+P
Sbjct: 821  EDLVE--MKPWY--RGFKGKIEETSPDVY-VTKGLYMPNGK-----------TIVVSELP 864

Query: 275  YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---LLMESIFM 331
                     E +  L+  K   ++ D R++  +    VLF  +   +P+   L +E+   
Sbjct: 865  IGKWTQDYKEHLDGLLEKK---IISDFREKHTD--TDVLFEIDFIGNPNVDILKLETTIR 919

Query: 332  LSDMETRFPLNMNVLSMGRVPQV-MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             ++M    P        G++ +   PLD I++EW   R+++  +R ++ ++ +  R  I 
Sbjct: 920  STNMHAFDP-------YGKIKKYDTPLD-IIREWFGVRKDLYVKRKAYLLEDLTHRTNIA 971

Query: 391  --KGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLR------- 440
              K   I  +N  EII   RNE D    +   +F   +++ D +LN+R+ SL        
Sbjct: 972  QNKYRFITMVNDGEIIINKRNESDISAELEKLKFYKVDDKYDYLLNMRISSLTLERAEEL 1031

Query: 441  KLEEYQIKSELDNL 454
            K E  +++ ELD+L
Sbjct: 1032 KRESVKLEKELDDL 1045


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 181/401 (45%), Gaps = 59/401 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++        F  
Sbjct: 664  TFLDHSVSKISYTDFINKELILFSMAD-NVRSIPSVVDGLKPGQRKVLYTC------FRR 716

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV       +   GNFG+    
Sbjct: 717  NLKKDMKVVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQG 776

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    D+  +    TYNE+D E   P ++    P +L NG
Sbjct: 777  GSDCASARYIYTRLSPFARRVFHAHDDPLL----TYNEDDGEKIEPEIYVPVVPMILVNG 832

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I +    L+D  E          + P F   G   E  +  
Sbjct: 833  ADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRP-------MQPWF--RGFTGEVTDV- 882

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                    GG R +    ++E G     + +TE+P +       +K+ ++I A++ P  +
Sbjct: 883  --------GGDRFKFSGIIKETGEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFI 932

Query: 299  EDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D +D +    V  V+      LD   +  +  +   +E +F L+  V +         G
Sbjct: 933  KDYKDYNTHTKVHFVI-----QLDEKNMKSA--LSEGLEEKFKLSKTVATTNLVAFDPEG 985

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            R+ +   +D ILKE+  +R +   +R  +++  + + ++ L
Sbjct: 986  RITKYATVDDILKEFYTYRLKFYEKRKQYQLSQLQKELDKL 1026


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 9   KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 68

Query: 133 EARMTQV 139
           EARM+++
Sbjct: 69  EARMSKI 75


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 34/266 (12%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+ T++ RAIP+L DGFKPV R +I    ++       F K A + G V    + HG+ 
Sbjct: 35  FAIYTVENRAIPNLIDGFKPVQRFVIARALDLSRGNKEKFHKLASVAGGVADLGYHHGEG 94

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S  D+   +A  +   YPL+ GQGNFG+     AAA RY   R++     + +   E A 
Sbjct: 95  SAQDAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRYIFCRISDNFRKVYKDT-EIAP 153

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA-LAL---ID 208
           + +D   +E   P  +    P +L NG  GIA G AT I  H+ + + E   LAL   +D
Sbjct: 154 EHKD---KEHVPPAFYLPIIPTVLLNGVQGIATGYATKILPHSFESVVECTKLALQGKLD 210

Query: 209 N-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
             PE+ I         P F         R  +V   RL  G    R  +      +    
Sbjct: 211 KEPEVQI---------PQF---------RGEVV---RLEDGSIECRGLYKFTSASQ---- 245

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAK 293
           + ++EIP +  +   +EK+ E ++ K
Sbjct: 246 MYISEIPAKFDRETYVEKVLEPMVDK 271


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 55/78 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGD 124
            RYPL+ GQGNFG+   D
Sbjct: 61  LRYPLVDGQGNFGSPGND 78


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 56/67 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 1   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 60

Query: 133 EARMTQV 139
           EARM+++
Sbjct: 61  EARMSKI 67


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61

Query: 132 TEA 134
           TEA
Sbjct: 62  TEA 64


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  EI      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEIISNLERLMQGEE--VHKMQPWYFG----FTGTMEEKEPGKFVSH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEIRPDGVVCITELPIGVW 897


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 68/98 (69%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  A
Sbjct: 8   FDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPA 67

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           A RYTEAR++++A  +LQ +++  V F   +++ + EP
Sbjct: 68  AMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEP 105


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+ +
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 121 IDG-DSAAAYRYTEARMTQVAELIL 144
            D   S AA RYTEA+++  +EL+L
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLL 85


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            G++DGD  AA RYTEAR++++A  +LQ +++  V F   +N +D+
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF--AWNFDDT 104


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 62/83 (74%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RY
Sbjct: 7   YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDF 154
           TE R++++A ++L  + +D V F
Sbjct: 67  TETRLSKIASVMLTNLKKDVVKF 89


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  EI      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEIISNLERLMRGEE--VHKMQPWYFG----FTGTMEEKEPGKFVSH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEIRPDGVVCITELPIGVW 897


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  EI      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEIISNLERLMRGEE--VHKMQPWYFG----FTGTMEEKEPGKFVSH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEIRPDGVVCITELPIGVW 897


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+ D   S AA RYT
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYT 60

Query: 133 EARMTQVAELIL 144
           E+++T +AE++L
Sbjct: 61  ESKLTPIAEVLL 72


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 179/406 (44%), Gaps = 69/406 (16%)

Query: 293 KRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           KR+  + D+RDES  D +RIV+  K  ++  D+++  ++  + ++T F  NM  L+ GR 
Sbjct: 4   KRLEGISDLRDESDRDGMRIVVELKRDAI-ADVVLNQLYRYTPLQTSFGANMVALNGGR- 61

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P++M L  +L+ +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR   
Sbjct: 62  PELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSP 121

Query: 412 KP---KPVMVSR--------------------------FSLTENQVDAILNLRLRSLRKL 442
            P   +  +++R                          + L+E Q  AIL+LRL+ L  L
Sbjct: 122 DPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTAL 181

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
              +I  EL  L  E      +L S  +    +  E+ EV+E+F+       R+T   E+
Sbjct: 182 XRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATP-----RKT---EI 233

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
             +D +   + +I +E + V +S+ G++        R+ K      + +  ++ D +   
Sbjct: 234 IDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRL 293

Query: 555 LHAHTTDRILLLSTDGKAYT-----LPAG----------NLLSGRGHGEAIQLLIDLNHN 599
             A T   +L  S  G+AY      LP            N+L  +  GE I  ++ L  +
Sbjct: 294 FVASTHTPVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPED 353

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +          T  ++  ++ GN    + S+     R GK  +  S
Sbjct: 354 E------ASWETLDVMFATASGNVRRNKLSDFTTVNRNGKIAMXXS 393


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 69/97 (71%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            G++DGD  AA RYTEAR++++A  +LQ +++  V F
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPF 97


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  EI      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEIISNLERLMRGEE--VHKMQPWYFG----FTGTMEEKEPGKFISH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEIRPDGVVCITELPIGVW 897


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 61/84 (72%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++ AM+ +G D+  A+KKSA +VG VIGK HPH D + Y + VR+AQP   RY L+ GQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVA 140
            +G IDGDSAAA R++E R+ ++A
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIA 85


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 67/95 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA R
Sbjct: 2   SYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMR 61

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           YTEAR++++A  +LQ +++  V F   +++ + EP
Sbjct: 62  YTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEP 96


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  EI      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEIISNLERLMRGEE--VHKMQPWYFG----FTGTMEEKEPGKFVSH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEIRPDGVVCITELPIGVW 897


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 61/347 (17%)

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++ L+ M+  F +NM  L  G+ P++  L  I++ ++ HRREV+ RRS F ++  
Sbjct: 1   MVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREVVTRRSIFELRKA 59

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------------------- 420
             R  IL+GL +A  NIDE+IAIIRN    ++    + SR                    
Sbjct: 60  RERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDE 119

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S +
Sbjct: 120 LEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAE 179

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EVK  F      G  R T  E++ A      + +I +E + V +S+ G+
Sbjct: 180 RLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQEDVVVTLSHEGY 231

Query: 530 IR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580
           ++        + +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L 
Sbjct: 232 VKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLP 291

Query: 581 LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621
            + RG  G  I  ++ L  N+ I     V+A+  D   K +V+++ G
Sbjct: 292 QASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 335


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RY
Sbjct: 7   KKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRY 66

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTY 158
           TEA+++  +EL+L  + +   +++D +
Sbjct: 67  TEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +   +   I+V E+PYQV K+RL+EKIAEL+  K+I  + ++RDES +D  
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ ++F  + M++ F +NM  L  G+ P+++ L  +L+ ++ HRRE
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQ-PRLLNLKQMLEYFIRHRRE 119

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           V+ RR+ F ++    R  +L+GL +A  NIDE+I 
Sbjct: 120 VVTRRTLFELRKARDRAHVLEGLAVALANIDEVIC 154


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 16/244 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 9   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLTHRKTVIIRRTIFELQK 67

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+++L  L
Sbjct: 68  ARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRL 127

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F    D+ R     
Sbjct: 128 TGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKF----DVPR----I 179

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++         + +I  E + V I++RG+I+ + S   +      K G   K+A+  + 
Sbjct: 180 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ----KRGGKGKLAVTTYD 235

Query: 560 TDRI 563
            D I
Sbjct: 236 DDFI 239


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+ +V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 2   FKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 61

Query: 131 YTEARMTQVAELIL 144
           YTE+R+++ +EL+L
Sbjct: 62  YTESRLSKYSELLL 75


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 57/365 (15%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+ TI+ERA+P + DG KPV R I+ ++ +     G  FKK+A + G +    + HG+ 
Sbjct: 19  FAMYTIEERALPSMVDGLKPVQRYILFSVLKNA---GREFKKNAAVAGVISEYGYNHGEM 75

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  D+   +A  +   +P+I G+GNFG       AA RY      +  E + + +     
Sbjct: 76  AAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFCSKHERFESMFKDM----- 130

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALI- 207
              +   E  ++  + P  +    P +L NG SGIA G AT I  H+VQ + +    ++ 
Sbjct: 131 ---ELLEESTADGSILPRYYLPILPTVLLNGVSGIATGFATKIMPHSVQSVAKCVEQVLK 187

Query: 208 ----DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
               D PEI   K    I+  +  T    VE        Y L                  
Sbjct: 188 SGKCDEPEIQFPKFFGKILSIEGETQSWKVEG------DYELS----------------- 224

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   +++ E+P +  + + +  + +L+   +I       DES    R   F      D D
Sbjct: 225 GKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGY----DESKMKDREFCFKVTLKRDFD 280

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +  E+I  +      F L+ NV    R   V+  +G LK +  +  +++    +FR   +
Sbjct: 281 VSHENIIKV------FKLSQNVSQYIR---VIDQNGNLKPY-DNASDLIVDFVNFRFNVL 330

Query: 384 DRRVE 388
            +R++
Sbjct: 331 QKRID 335


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61


>gi|153830649|ref|ZP_01983316.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
 gi|148873858|gb|EDL71993.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
          Length = 254

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S +GWIR  K H VD  +L++K GD+        +  + + L +DG++Y+L +  L S
Sbjct: 1   VLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPS 60

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE I   +++     I    + +     LV S  G  F+ +  ++++  R GK  +
Sbjct: 61  ARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALI 120

Query: 643 KVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSY 692
            +    ++   +++  +  D +  +    ++L+F I  +P++S+GKG ++          
Sbjct: 121 NLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKT 180

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           ++  +S+++       +T + +  R      +DL  + G+RG  G+L+P+G  R
Sbjct: 181 REEVLSNLMVLPQGASIT-LYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR 233


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 5/82 (6%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RY
Sbjct: 8   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRY 67

Query: 132 TEARMTQVAELIL----QGVDE 149
           TEA+++  +EL+L    QG  E
Sbjct: 68  TEAKLSAYSELLLSELGQGTSE 89


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 59/87 (67%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE RMT +A  +++ + E+ VD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGT 180
           F   Y+ +  EP + PS+ PNLL NG+
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGS 87


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 17/257 (6%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+
Sbjct: 2   RVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLNHRK 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
            V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE 
Sbjct: 60  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTEL 119

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F
Sbjct: 120 QANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKF 179

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               D+ R      ++         + +I  E + V I++RG+I+ + S   +      K
Sbjct: 180 ----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ----K 227

Query: 547 EGDSLKIALHAHTTDRI 563
            G   K+A+  +  D I
Sbjct: 228 RGGKGKLAVTTYDDDFI 244


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN GNID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +L+ ++++ V F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   KSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|167949304|ref|ZP_02536378.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 105

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 66/88 (75%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ +L+GL+IAYLNIDE+IAIIR ED PK  ++ RF+L+E Q +AI
Sbjct: 1   MTRRLQYRLDQVLDRLHLLEGLMIAYLNIDEVIAIIRYEDDPKAELMRRFALSERQAEAI 60

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           LNLRLR L KLEE++I+ E D L  E++
Sbjct: 61  LNLRLRHLAKLEEFKIRGEQDELEQERD 88


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD A
Sbjct: 3   SAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 59


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 203/456 (44%), Gaps = 72/456 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DG KP  R+I+ A  +  L       + +  V E  G  + HG+QS+  ++V
Sbjct: 645  ERSIPSVVDGLKPSQRKILFAAFKRNLTNEMKVAQFSGYVAEHSG--YHHGEQSLQGAIV 702

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ +V      L+   G FG+  + G  +A+ RY   +++     +    D    D  
Sbjct: 703  GMAQDYVGSNNMNLLLPNGQFGSRLLGGKDSASARYIFTKLSPATRQVFNQSD----DVL 758

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y E+D    EP  +    P LL NG +GI  G +T IPS+N ++I +    LI   E+
Sbjct: 759  LKYLEDDGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEM 818

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                +  +  G      G IV++           +G  +V  +            +VV+E
Sbjct: 819  V--PMTPWYKG----FTGTIVQNDNGTFTC----KGVAKVNGK-----------VVVVSE 857

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---LLMESI 329
            +P     S   + +  L+  K   ++ D R++  E  + V+F  + S +PD   L +E +
Sbjct: 858  LPIGTWTSDYKDFLEGLVEKK---VIVDFREKHTE--KNVMFEIDYSGEPDISILKLEKV 912

Query: 330  FMLSDMETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               ++M    P        G++ +   PLD I+++W   RRE   +R ++ ++ +  +  
Sbjct: 913  IRTTNMHAFDP-------QGKIKKYADPLD-IIRDWFEVRREFYTKRKNYLLKDLSHKAA 964

Query: 389  ILKGLLIAYLNIDEIIAIIRNED-----KPKPVMVS-----RFSLTENQVDAILNLRLRS 438
            I +       N    I +I N++     K + V++S     +F  +E     +L++ + S
Sbjct: 965  IAE-------NKHRFITLIVNDELVLSKKTESVILSELRTLKFYKSEGSYKYLLDMSISS 1017

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGK-QQWN 473
            L      +++ E + L   K+++  L N+ + Q WN
Sbjct: 1018 LTLERAEKLRIEAEKL---KKELSILENTSRTQMWN 1050


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y SLVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+ 
Sbjct: 1   SELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSP 60

Query: 122 DG-DSAAAYRYTEARMT 137
           D   S AA RYTEA+++
Sbjct: 61  DDPKSFAAMRYTEAKLS 77


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 53/71 (74%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQ 145
           R+T +A  +L+
Sbjct: 61  RLTPLAMEMLR 71


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +L+ ++++ V F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHG+ S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 26/255 (10%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+ T++ RAIP+L DG KPV R +++   ++       F K A + G V    + HG+ 
Sbjct: 19  YAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKLASVAGGVADAGYHHGEN 78

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S  ++   +A  +   +P + GQGNFG+     AAA RY   R+++    + +   E A 
Sbjct: 79  SAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFCRVSENFNKVYKDT-EIAP 137

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           +  D    E   P  +    P +L NG  GIA G +TSI  H+ + I       ++   +
Sbjct: 138 EHEDL---EHLPPRFYLPIIPTVLLNGVRGIATGYSTSILPHDFESIVRCTEQALNGETV 194

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWCIVVT 271
           S+      +  P F       E  +     Y L G   F  + +            + ++
Sbjct: 195 SMPT----VAFPQFRGEVYCTEPNK-----YELHGTYNFTSKTQ------------MYIS 233

Query: 272 EIPYQVQKSRLIEKI 286
           EIPYQ  +++ +EK+
Sbjct: 234 EIPYQFDRAKYVEKV 248


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 58/80 (72%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  + +
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 150 DAVDFRDTYNEEDSEPVVFP 169
           + VD+   Y+  +  P V P
Sbjct: 61  ETVDWVPNYDGTEMIPAVLP 80


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 4   AKFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 63

Query: 129 YRYTEARMTQVAEL 142
            RYTE+R+++ +EL
Sbjct: 64  MRYTESRLSKYSEL 77


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 193/431 (44%), Gaps = 63/431 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 776  TFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FKR 828

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV    L  +   GNFG+    
Sbjct: 829  NVKKDMKVVELAGHVSGMTAYQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQG 888

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYNE+D E   P ++    P +L NG
Sbjct: 889  GADCASARYIYTRLSPFARRVFHQADEPLL----TYNEDDGEKIEPELYVPVVPLILING 944

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N +E+      ++D  E   E +  +  G      G + +     
Sbjct: 945  ADGIGTGWSSSIPNYNPEEVVANLKRMMDGEEP--EPMQPWFRG----FKGEVTQ----- 993

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                   +G  R +    ++EV      + +TE+P +       +K+ ++I A++ P  +
Sbjct: 994  -------QGPDRYKFSGLIKEVSDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFI 1044

Query: 299  EDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------G 349
            +D +D  +   V  V+      +D   L  ++     +E +F L+  + +         G
Sbjct: 1045 KDYKDYNTHTKVHFVI-----QMDEKHLKAAV--SEGLEEKFKLSRTIATSNLVAFDPEG 1097

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIR 408
            R+ +   +  ILKE+ A R +   RR   ++  + + ++          + ID  + I +
Sbjct: 1098 RITKYATVSDILKEFYAVRLKYYERRKQHQLSELQKELDKFTNQARFVQMIIDGKLVISK 1157

Query: 409  NEDKPKPVMVS 419
               K KPV+++
Sbjct: 1158 ---KKKPVLIA 1165


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 116 GNFGNIDG 123
           GNFG+IDG
Sbjct: 61  GNFGSIDG 68


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650 TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                  + A  V E     + HG+QS+  ++V LAQ FV     PL+   G FG     
Sbjct: 709 TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA RY   R+T +A  I    DE  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767 GKDHAAGRYIFTRLTNIARYIYHPSDEFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEI 212
           I  G AT+IP+++  E+ +  + L+   E+
Sbjct: 826 IGTGFATNIPNYSPLEVIDNLMRLLRGEEV 855


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTE
Sbjct: 5   KSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 64

Query: 134 ARMTQVAELILQ 145
           AR+T +A  +L+
Sbjct: 65  ARLTPLAMEMLR 76


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +L+ ++++ V F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   YLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 61


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 53/63 (84%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQ 103
           +AQ
Sbjct: 61  MAQ 63


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 53/71 (74%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQ 145
           R+T +A  +L+
Sbjct: 61  RLTPLAMEMLR 71


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 52/69 (75%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI++AMSE+GL   A +KKSAR VG V+GK HPHGD + Y+++V +AQPF  RYP + 
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 114 GQGNFGNID 122
           GQ N+G+ D
Sbjct: 61  GQSNWGSAD 69


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           VG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 1   VGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 56


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 12/195 (6%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+ TI+ERA+P + DG KP  R I++++ +     G  FKK+A I G +    + HG+ 
Sbjct: 19  FAMYTIEERALPSVVDGLKPAQRYILYSVLKNA---GREFKKNAAIAGVISEYGYNHGET 75

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  D+   +A  +   +P+I G+GNFG+      AA RY         + + + +D    
Sbjct: 76  AAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFCTKHSNFDSMFKDMDL--- 132

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI----- 207
              ++  +    P  +    P +L NG SGIA G +T I  HNVQ + +    ++     
Sbjct: 133 -LEESLADGSILPRYYLPILPTVLLNGVSGIATGFSTKILPHNVQSVAKCVEQVLKTGKC 191

Query: 208 DNPEISIEKLLEYII 222
           D PE+   K    II
Sbjct: 192 DEPELQFPKFFGKII 206


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++ R+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 54/65 (83%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
           + RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++
Sbjct: 1   RARALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAM 60

Query: 99  VRLAQ 103
           VR+AQ
Sbjct: 61  VRMAQ 65


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 54/369 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HG+ S+  
Sbjct: 807  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGTTAYQHGEGSLQQ 860

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  +    D+  +
Sbjct: 861  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFHNHDDPLL 920

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYNE+D    EP V+    P +L NG  GI  G ++SIP++N ++I E    ++D 
Sbjct: 921  ----TYNEDDGAKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVENLKRMMDG 976

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             P   ++       G                 E   +G+  F+      ++E G     +
Sbjct: 977  EPLKPMQPWFRGFTG-----------------EVTAVGQDRFKFSG--IIKETGDKE--V 1015

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLL- 325
             +TE+P +       +K+ ++I A++ P  ++D +D  +   V  V+    + +   +  
Sbjct: 1016 EITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHMKTAIAE 1075

Query: 326  -MESIFMLSDMETRFPLNMNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
             +E  F LS   T      N+++    GR+ +   ++ I+KE+ A R +   RR  +++ 
Sbjct: 1076 GLEEKFKLSKTMT----TTNLVAFDPEGRITKYASVEDIMKEFYAVRLKYYERRKQYQLN 1131

Query: 382  AIDRRVEIL 390
             + + ++ L
Sbjct: 1132 EMQKELDKL 1140


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  G+G   VRA+  +E    G   I
Sbjct: 2   NPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYESGKGNIVVRAKTEIETEKSGRERI 60

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +V+EIPY V K+ L++KIAEL   K I  +  +RDES +    +     R     +++ +
Sbjct: 61  IVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLNN 120

Query: 329 IFMLSDMETRFPLNM 343
           +F  + M++ F +NM
Sbjct: 121 LFKETQMQSNFAMNM 135


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG-DSAAAYRYTE 133
             D   S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +L+ ++++ V F
Sbjct: 61  AKLSQLSEELLRDINKETVAF 81


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 53/63 (84%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQ 103
           +AQ
Sbjct: 61  MAQ 63


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 177/400 (44%), Gaps = 44/400 (11%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V+    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVTYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                   + A  V E     + HG+QS+  ++V LAQ +V     PL+   G FG     
Sbjct: 709  VRSIKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNIPLLHRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTNIARRIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L+   ++   K   +       TG I  E RE     
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLRRLLSGDDLRPMKPWYFGF-----TGTI--EERE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F    R+ V   G     + +TE+P     S+  + + +L   + +    +  
Sbjct: 874  ----KGKFVSSGRYTVRPDG----VVCITELPIGTWTSQYKKFLEDLREREVVVQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-----MNVLSM---GRVPQV 354
             +   D  + + P+        +++       +E +  L       N+++    GR+ + 
Sbjct: 926  TDVTVDFEVFIHPE--------VLQQWTNQGCLEDKLQLREYIHATNIIAFDREGRITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
            +  + +LKE+   R E   RR  F ++ + R V  L+ ++
Sbjct: 978  LDAESVLKEFYLVRLEYYARRREFLLEQLQRSVLKLENMV 1017


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY 
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 111 LISGQGNFG 119
           L+ G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVH RI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPF 105
           +AQ F
Sbjct: 61  MAQDF 65


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q+AE +L+ ++++ V F
Sbjct: 61  AKLSQLAEELLRDINKETVSF 81


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650 TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                  + A  V E     + HG+QS+  ++V LAQ FV     PL+   G FG     
Sbjct: 709 TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767 GKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEI 212
           I  G AT+IP+++  E+ +  + L+   E+
Sbjct: 826 IGTGFATNIPNYSPLEVIDNLMRLLRGEEV 855


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650 TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                  + A  V E     + HG+QS+  ++V LAQ FV     PL+   G FG     
Sbjct: 709 TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767 GKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEI 212
           I  G AT+IP+++  E+ +  + L+   E+
Sbjct: 826 IGTGFATNIPNYSPLEVIDNLMRLLRGEEV 855


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 167/370 (45%), Gaps = 56/370 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   +  +       K A + G V+G   + HG+QS+  +++
Sbjct: 811  RSIPSVIDGLKPGQRKVLYTCFKRNVKKDV---KVAELSGYVLGMTAYQHGEQSLQQTII 867

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    DE  +   
Sbjct: 868  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLL--- 924

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI-DNPE 211
             TYN +D    EP ++    P +L NG  GI  G +TSIP++N +EI      L+   P 
Sbjct: 925  -TYNVDDGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPL 983

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWCIVV 270
            + +E       G     GG          E Y+  GR          + ++G     + +
Sbjct: 984  VPMEPWFRGFTGEVVSMGG----------ERYKFSGR----------ISQIGDNE--VEI 1021

Query: 271  TEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMES 328
            TE+P +       +++ E+I A+++P  ++D +D  +   V  ++      LD     ++
Sbjct: 1022 TELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFII-----QLDEKYAKKA 1076

Query: 329  IFMLSDMETRFPLNMNVL--------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            I     +E +F L   +         S GR+ +   ++ IL+E+ + R ++  +R   ++
Sbjct: 1077 I--AEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQL 1134

Query: 381  QAIDRRVEIL 390
              + + +E +
Sbjct: 1135 SQMQKDLEKM 1144


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
          Length = 1058

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 192/439 (43%), Gaps = 73/439 (16%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DG KP  R+I+ A  +  L       + +  V E+ G  + HG+QS+  ++V
Sbjct: 645  ERSIPSVVDGLKPSQRKILFAAFKRNLVQEIKVAQFSGYVSEISG--YHHGEQSLQGAIV 702

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ +V      L+   G FG+  + G  +A+ RY   +++ V   +    D    D  
Sbjct: 703  GMAQDYVGSNNMNLLLPNGQFGSRLLGGKDSASARYIFTKLSPVTRQVFNQAD----DVL 758

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y E+D    EP  +    P LL NG +GI  G +T IPS+N ++I +    LI   E+
Sbjct: 759  LKYLEDDGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEM 818

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                          P      E   SIV++     G F  +     +  G+    +VV+E
Sbjct: 819  -------------VPMSPWYKEFTGSIVQN---DNGTFTCKG--VAKVSGKN---VVVSE 857

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---LLMESI 329
            +P     S   + +  L+  K   ++ D R++  E  + VLF  + S +PD   L +E +
Sbjct: 858  LPIGTWTSDYKDFLEGLVEKK---VIVDFREKHTE--KNVLFEIDYSGEPDISILKLEKV 912

Query: 330  FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               ++M    P        G++ +      I+++W   R+    +R ++ ++ +  +  I
Sbjct: 913  IRTTNMHAFDP-------QGKIKKYACSLDIIRDWFEVRKTFYTKRKAYLIKDLSHKAAI 965

Query: 390  LKGLLIAYLNIDEIIAIIRNED-----KPKPVMVS-----RFSLTENQVDAILNLRLRSL 439
             +       N    I +I N++     K + V++S     +F  ++     +L++ + SL
Sbjct: 966  AE-------NKHRFITLIVNDELVLSKKTESVILSELRTLKFYKSDGSYKYLLDMSISSL 1018

Query: 440  R-------KLEEYQIKSEL 451
                    +LE  ++K EL
Sbjct: 1019 TLERAEKLRLEAEKLKKEL 1037


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+V E++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 52/71 (73%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQ 145
           R+T +A  +L+
Sbjct: 61  RLTPLAMEMLR 71


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 204/485 (42%), Gaps = 80/485 (16%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    L+  +    L +A+ T++ERAIP + DGFKPV R  ++   E        F K 
Sbjct: 99  NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 158

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA RY   R
Sbjct: 159 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCR 218

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPV-----VFPSKF-----PNLLANGTSGIAV 185
           + Q              +F D Y +    PV       P +F     P +LANG  GIA 
Sbjct: 219 VHQ--------------NFWDIYKDISLSPVHPDPEHLPPRFYLPVIPMVLANGVKGIAT 264

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+I  H+ + + +  LA +   EI   ++        FP    IV          R+
Sbjct: 265 GYATTIFPHSYESLVKCTLAAVKGEEIPEPEV-------QFPCFKGIVR---------RI 308

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
                 +   +  E VG+    +++TE+P +  +   +  + +L    +I      ++++
Sbjct: 309 NSKSIEIEGLY--ELVGQTK--LIITEVPVRYDRLEYVSILDKLEEQGKI---VGYKEQT 361

Query: 306 AEDVRIVL-------FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPL 357
           ++  R  +       F +    +P++  E I  + ++      N+ VL   G++ +    
Sbjct: 362 SDGFRFEVTLKRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECA 421

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN--IDEII-------AIIR 408
             ++++++ HR++   +R  F  +  +   + L     A++N  I+E I       A + 
Sbjct: 422 ADLIRDFVEHRKKYTNQRVIFEKEKAEYSRD-LAWAKFAFVNEVIEEKIVLRGKSKAQLI 480

Query: 409 NEDKPKPVM---------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            E K KP M         +S + LTE   D    L+  +L++ +EY   S   N   E E
Sbjct: 481 AEVKSKPNMAGFENELVGMSIYRLTE---DETHKLQEEALKQTKEYDYWS---NTTPENE 534

Query: 460 KIDSL 464
            +  L
Sbjct: 535 YVKDL 539


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 57/79 (72%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD ++Y ++VR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +++ +
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 148 DEDAVDFRDTYNEEDSEPV 166
            E+ VDF+  Y+   +EPV
Sbjct: 61  RENTVDFQPNYDGRTTEPV 79


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 63/81 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A++++++E +L+ ++++ V F
Sbjct: 61  AKLSRISEELLRDINKETVPF 81


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 146/285 (51%), Gaps = 28/285 (9%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q    R  IL+GL 
Sbjct: 1   MESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLK 59

Query: 395 IAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L  LE  +I++EL
Sbjct: 60  IALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENEL 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+ E  +++ +L S     N I  E++E++  F    D+ R      ++         
Sbjct: 120 AELMKEIARLEEILKSETLLENLIRDELKEIRSKF----DVPR----ITQIEDDYDDIDI 171

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V I++RG+I+ + S   +          A+   + D ++    A+T D +
Sbjct: 172 EDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTL 231

Query: 564 LLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
           + ++  G     K Y +P G   S    G+A+  LI+L   + I+
Sbjct: 232 MFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINLQAEEKIM 273


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 180/403 (44%), Gaps = 63/403 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 648  TFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FKR 700

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGN--ID 122
              KK  ++V   G V G   + HGD S+  ++V LAQ FV    L  +   GNFG+    
Sbjct: 701  NVKKDMKVVELAGHVSGMTAYQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQG 760

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYNE+D E   P ++    P +L NG
Sbjct: 761  GADCASARYIYTRLSPFARRVFNQQDEPLL----TYNEDDGEKIEPELYVPVVPLILING 816

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRES 238
              GI  G ++SIP++N ++I      ++D  E   ++       G   P G         
Sbjct: 817  ADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRGFHGDVTPQG--------- 867

Query: 239  IVESYRL-GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
              + Y+  GR          ++E+      + +TE+P +       +K+ ++I A++ P 
Sbjct: 868  -PDRYKFSGR----------IQELNEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPS 914

Query: 297  LLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM------- 348
             ++D +D +    V  V+      +D   L  ++     +E +F L+  + +        
Sbjct: 915  FIKDYKDYNTHTKVHFVI-----QMDEKHLKSAV--EEGLEEKFKLSKTIATTNLVAFDP 967

Query: 349  -GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             GR+ +   +  ILKE+ A R +   RR   ++  + + ++ L
Sbjct: 968  EGRITKYATVSDILKEFFAVRLKYYERRKQHQLSELQKDLDKL 1010


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 167/369 (45%), Gaps = 54/369 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   +  +       K A + G V+G   + HG+QS+  +++
Sbjct: 715  RSIPSVVDGLKPGQRKVLYTCFKRNVKKDV---KVAELSGYVLGMTAYQHGEQSLQQTII 771

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    DE  +   
Sbjct: 772  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLL--- 828

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI-DNPE 211
             TYN +D    EP ++    P +L NG  GI  G +TSIP++N +EI      L+   P 
Sbjct: 829  -TYNVDDGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPL 887

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + +E            TG ++               GG R +    + ++G     + +T
Sbjct: 888  VPMEPWFRGF------TGEVV-------------SMGGERYKFSGRISQIGDNE--VEIT 926

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESI 329
            E+P +       +++ E+I A+++P  ++D +D  +   V  ++      LD     ++I
Sbjct: 927  ELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFII-----QLDEKYAKKAI 981

Query: 330  FMLSDMETRFPLNMNVL--------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
                 +E +F L   +         S GR+ +   ++ IL+E+ + R ++  +R   ++ 
Sbjct: 982  --AEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLS 1039

Query: 382  AIDRRVEIL 390
             + + +E +
Sbjct: 1040 QMQKDLEKM 1048


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDG-DSAAAYRYTE 133
             D   S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HP GD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 16/263 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 647 NVNESMDYSVRQVSYRDFVDKELILFSIADC-ERSIPSAIDGFKPGQRKILFSCFKRNLV 705

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 706 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RY   R+  VA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764 KDHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGI 822

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +TSIP++N  E+      L+   E  + K+  +  G      G + E       S+
Sbjct: 823 GTGFSTSIPNYNPLEVIRNLERLMRGEE--VHKMQPWYFG----FTGTMEEKEPGKFISH 876

Query: 244 RLGRGGFRVRARWCVEEVGRGSW 266
             GR   R     C+ E+  G W
Sbjct: 877 --GRYEVRPDGVVCITELPIGVW 897


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVSF 81


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 167/369 (45%), Gaps = 54/369 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   +  +       K A + G V+G   + HG+QS+  +++
Sbjct: 715  RSIPSVIDGLKPGQRKVLYTCFKRNVKKDV---KVAELSGYVLGMTAYQHGEQSLQQTII 771

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    DE  +   
Sbjct: 772  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLL--- 828

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI-DNPE 211
             TYN +D    EP ++    P +L NG  GI  G +TSIP++N +EI      L+   P 
Sbjct: 829  -TYNVDDGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPL 887

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + +E            TG ++               GG R +    + ++G     + +T
Sbjct: 888  VPMEPWFRGF------TGEVV-------------SMGGERYKFSGRISQIGDNE--VEIT 926

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESI 329
            E+P +       +++ E+I A+++P  ++D +D  +   V  ++      LD     ++I
Sbjct: 927  ELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFII-----QLDEKYAKKAI 981

Query: 330  FMLSDMETRFPLNMNVL--------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
                 +E +F L   +         S GR+ +   ++ IL+E+ + R ++  +R   ++ 
Sbjct: 982  --AEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLS 1039

Query: 382  AIDRRVEIL 390
             + + +E +
Sbjct: 1040 QMQKDLEKM 1048


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 167/369 (45%), Gaps = 54/369 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   +  +       K A + G V+G   + HG+QS+  +++
Sbjct: 811  RSIPSVVDGLKPGQRKVLYTCFKRNVKKDV---KVAELSGYVLGMTAYQHGEQSLQQTII 867

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    DE  +   
Sbjct: 868  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLL--- 924

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI-DNPE 211
             TYN +D    EP ++    P +L NG  GI  G +TSIP++N +EI      L+   P 
Sbjct: 925  -TYNVDDGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGEPL 983

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + +E            TG ++               GG R +    + ++G     + +T
Sbjct: 984  VPMEPWFRGF------TGEVV-------------SMGGERYKFSGRISQIGDNE--VEIT 1022

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESI 329
            E+P +       +++ E+I A+++P  ++D +D  +   V  ++      LD     ++I
Sbjct: 1023 ELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFII-----QLDEKYAKKAI 1077

Query: 330  FMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
                 +E +F L   + +         GR+ +   ++ IL+E+ + R ++  +R   ++ 
Sbjct: 1078 --AEGLEEKFKLTKTIATSNLVAFDPEGRITKYESVEEILREFFSVRLKLYEKRKQHQLS 1135

Query: 382  AIDRRVEIL 390
             + + +E +
Sbjct: 1136 QMQKDLEKM 1144


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 132/251 (52%), Gaps = 21/251 (8%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +NM  L +   P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+GL 
Sbjct: 3   LQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGLR 61

Query: 395 IAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NID II +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 62  IALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEY 121

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            NL+A    + ++L   ++    I  E+ E+K  ++      +RRT   E+   D  +L+
Sbjct: 122 QNLVALINDLKAILADDERILEIIREELEEIKVKYAD-----KRRT---EILAGDLVSLE 173

Query: 512 -QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + + ++ RG+I        RS +     +  +   E D ++  +   T D 
Sbjct: 174 DEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDT 233

Query: 563 ILLLSTDGKAY 573
           +L  +  GK Y
Sbjct: 234 LLFFTNTGKVY 244


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 60/78 (76%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNE 160
           IL+ +++D VDF   Y++
Sbjct: 61  ILRDINKDTVDFVPNYDD 78


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAA 128
           A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+    D  S   
Sbjct: 1   AKFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPDDPKSFVV 60

Query: 129 YRYTEARMTQVAELILQGVDEDAVDF 154
            RYTE+R+++ AE++L  + +  VD+
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDW 86


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 59/78 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNE 160
           IL+ +++D VDF   Y++
Sbjct: 61  ILRDINKDTVDFVPNYDD 78


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 143/273 (52%), Gaps = 25/273 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 6   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQK 64

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L
Sbjct: 65  ARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRL 124

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    D+ R     
Sbjct: 125 TGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF----DVPR----I 176

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 177 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 236

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
           +    A+T D ++ ++  G     K Y +P G+
Sbjct: 237 ESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 269


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 24/192 (12%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +A+ T++ERAIP + DGFKPV R  ++   E        F K A + G V    + HG
Sbjct: 117 LEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKVAALAGGVSEAGYHHG 176

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           + S   +   +A  +    P++ G GNFG+     AAA RY   R+ Q            
Sbjct: 177 EGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCRVHQ------------ 224

Query: 151 AVDFRDTYNEEDSEPV-----VFPSKF-----PNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +F D Y +    PV       P +F     P +LANG  GIA G AT+I  H+ + + 
Sbjct: 225 --NFWDIYKDISLSPVHPDPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPHSYESLV 282

Query: 201 EAALALIDNPEI 212
           +  LA +   EI
Sbjct: 283 KCTLAAVKGEEI 294


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDGDSAAA 128
            D   + A
Sbjct: 61  PDNPKSFA 68


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 48/58 (82%)

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L
Sbjct: 2   HPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLL 59


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 143/273 (52%), Gaps = 25/273 (9%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 7   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQK 65

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L
Sbjct: 66  ARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRL 125

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    D+ R     
Sbjct: 126 TGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF----DVPR----I 177

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSL 551
            ++         + +I  E + V I++RG+I+ + S   +          A+   + D +
Sbjct: 178 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFI 237

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
           +    A+T D ++ ++  G     K Y +P G+
Sbjct: 238 ESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 270


>gi|226327143|ref|ZP_03802661.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
 gi|225204361|gb|EEG86715.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
          Length = 459

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +  E +TV++S +G IR  K HS+D  ++ FK GD    A+   +   + L+ T G++YT
Sbjct: 210 LHPEAVTVIMSEKGLIRCQKGHSIDAKSVGFKSGDDYFDAVEGMSNQPVHLIDTTGQSYT 269

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +    L SGR  G+A+   + +     +    + ++T K+++ S  G  FI +  ++ + 
Sbjct: 270 VDVDALPSGRSKGDALTERLKVQKGAQLRHVVMGENTDKIVMASDAGYGFICQVDDLTSK 329

Query: 635 TRKGKTFLKVSSE----EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL- 689
            + GK+ L +          +L  ++T D + ++ +  ++LIF   ++P M +GKG ++ 
Sbjct: 330 NKAGKSLLTLPENALPLPPQRLNNELT-DLIMIITKGGRMLIFEASELPTMVKGKGNQMV 388

Query: 690 ---QSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
               S    G  +V   ++        +    R    S N+L+ +  KRG  G+ +P+G
Sbjct: 389 SIPASQAASGEDNVAWLRVLPENASVTLHFGKRKMTMSMNELVSFKAKRGRRGTSLPRG 447



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++ GDS   A+   +   +L L + G++YTL   ++ SGR  GE +   +       +
Sbjct: 1   MSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYTLSPNDMPSGRSQGEPLTGKLTFPPEASV 60

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
                  +  + L+ + +G   ++   E+    + GK  L VS  EK +L+  +  D   
Sbjct: 61  KYMLAGSAGQEYLLATKEGYGTVLSYDEMETKNKTGKGLLTVS--EKTELLAPLLVDPQK 118

Query: 661 ------VAVVGENRKLLIFSIDQIPEMS-RGKGVRL 689
                   ++ +  ++L  S +Q+ EM+ +G+G RL
Sbjct: 119 KNEQHWFIIITDKTRILAISAEQLNEMNKKGRGTRL 154


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
          V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KKSAR+V
Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70

Query: 80 GEVIGKLHPHG 90
          G+VIGK HP G
Sbjct: 71 GDVIGKYHPPG 81


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 167/373 (44%), Gaps = 62/373 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    +K  ++V   G V G   + HGD S+  
Sbjct: 815  RSIPSVVDGLKPGQRKVLYTC------FKRNVRKDIKVVELAGYVSGMTAYQHGDVSLQQ 868

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  I    DE  +
Sbjct: 869  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLL 928

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP ++    P +L NG  GI  G +TSIP++N ++I      L+D 
Sbjct: 929  ----TYNVDDGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDG 984

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWC 267
             P + ++       G     GG          E Y+  GR          + +VG     
Sbjct: 985  EPLVPMQPWFRGFTGEVVSLGG----------ERYKFSGR----------ISQVGENE-- 1022

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLL 325
            + +TE+P +       +++ E+I A+++P  ++D +D  +   V  V+      LD    
Sbjct: 1023 VEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVI-----QLDEKHA 1077

Query: 326  MESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++I     +E +F L+  + +         GR+ +    + IL+E+ + R +   +R  
Sbjct: 1078 AKAI--AEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKQ 1135

Query: 378  FRMQAIDRRVEIL 390
            +++  + R ++ L
Sbjct: 1136 YQLSQLQRDLDKL 1148


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella virus
            MT325]
          Length = 1058

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 199/456 (43%), Gaps = 72/456 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DG KP  R+I+ A  +  L       + +  V E  G  + HG+QS+  ++V
Sbjct: 645  ERSIPSVVDGLKPSQRKILFAAFKRNLTNEMKVAQFSGYVAEHSG--YHHGEQSLQGAIV 702

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ +V      L+   G FG+  + G   A+ RY   +++ V   +    D    D  
Sbjct: 703  GMAQDYVGSNNMNLLLPNGQFGSRILGGKDCASARYIFTKLSPVTRQVFNQAD----DVL 758

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y E+D    EP  +    P LL NG +GI  G +T IPS+N ++I      LI   E+
Sbjct: 759  LKYLEDDGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIINNVKRLISGKEM 818

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
                          P      E   SIV++     G F  +    V +V   S  +VV+E
Sbjct: 819  -------------VPMTPWYKEFTGSIVQN---DNGTFTCKG---VAKVSGKS--VVVSE 857

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---LLMESI 329
            +P     S   + +  L+  K   ++ D R++  E  + VLF  +   +PD   L +E  
Sbjct: 858  LPIGTWTSDYKDFLEGLVEKK---VIVDFREKHTE--KNVLFEIDFPGEPDLSILKLEKA 912

Query: 330  FMLSDMETRFPLNMNVLSMGRVPQVM-PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               ++M    P        G++ +   PLD IL +W   R+    +R ++ ++ +  +  
Sbjct: 913  IRTTNMHAFDP-------EGKIKKYADPLDIIL-DWFEVRKTFYTKRKNYLLKDLSHKAA 964

Query: 389  ILKGLLIAYLNIDEIIAIIRNED-----KPKPVMVS-----RFSLTENQVDAILNLRLRS 438
            I +       N    I +I N++     K + V++S     +F  +E     +L++ + S
Sbjct: 965  IAE-------NKHRFITLIVNDELVLSKKTESVILSELRTLKFYKSEGSYKYLLDMSISS 1017

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGK-QQWN 473
            L      +++ E + L   K+++  L N+ + Q WN
Sbjct: 1018 LTLERAEKLRIEAEKL---KKELSILENTSRTQMWN 1050


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 24/193 (12%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+ TI+ERA+P + DG KPV R I++++ +     G +FKK+A I G +    + HG+ 
Sbjct: 19  FAMYTIEERALPSMVDGLKPVQRYILYSVLKNA---GKSFKKNAAIAGVISEYGYNHGEV 75

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  D+   +A  +   +P+I GQGNFG+      AA RY          +     D+   
Sbjct: 76  AAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARY----------IFCTKHDQFDS 125

Query: 153 DFRDTYNEEDSE------PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            F+D    E+S       P  +    P +L NG SGIA G AT I  H++  + +    +
Sbjct: 126 MFKDMELLEESTADGSELPRYYLPILPTVLLNGVSGIATGFATKILPHSLVSVAKCVEQV 185

Query: 207 I-----DNPEISI 214
           +     D P+I  
Sbjct: 186 LKTGKCDEPQIQF 198


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 179/393 (45%), Gaps = 50/393 (12%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I++A  +  L      
Sbjct: 764  VDHSIKELSFDDFINKELIHYSWAA-NHRSIPSVMDGLKPGQRKILYAAFKRKLTSEIKV 822

Query: 73   KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAA 128
             + +  V E     + HG+QS+  ++V++AQ FV     PL++  G FG     GD +A+
Sbjct: 823  AQFSGYVAEHTA--YHHGEQSLSSTIVKMAQDFVGSNNIPLLTSGGQFGTRLQGGDDSAS 880

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAV 185
             RY   ++  +  LI   +D+D +     Y EE+ E   P  +    P +L NG+ GI V
Sbjct: 881  PRYIFTKLNSITRLIFNDLDDDLL----KYLEEEGEMIQPNYYVPILPMILVNGSDGIGV 936

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            GM+ S+P ++  ++ +  L L++N +  ++ L+ +  G      G IV    ++  S++ 
Sbjct: 937  GMSNSVPLYSPIDLIDYLLNLLNNQK-QMKALVPWYRG----FTGTIVRGSNAVNGSFKT 991

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
                 RV     + ++  G W      + Y+V  + L+EK            ++   D +
Sbjct: 992  SGVITRVGRTLVISDLPIGKWT-----VDYKVVLNDLVEK----------DFIKSYHDGN 1036

Query: 306  AED-VRIVLFPKNRSLDPDLLMESIFMLSDME--TRFPLNMNVLS-------MGRVPQVM 355
             E+ V   +   N  L      E I  ++D E   +F LN ++ S        G + +  
Sbjct: 1037 TENSVSFTIHFTNDQL------EEIDEMTDNELIDKFKLNSSLHSNLMLFDTNGNIKKYE 1090

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
              + I+ E+  +RR++   R       + ++++
Sbjct: 1091 STEEIIGEFFQYRRKLYVDRKKMLQDRLKKQID 1123


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 208/482 (43%), Gaps = 73/482 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP L DG KP  R+I+ A  +  L       + +  V E     + HG+QS+  ++++
Sbjct: 799  RSIPSLIDGLKPGQRKILFASFKRRLTSEIKVSQLSGYVAEQTS--YHHGEQSLNSTIIK 856

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +A  FV     PL++  G FG     GD +A+ RY   ++  ++  +   +D+  ++   
Sbjct: 857  MAHNFVGSNNIPLLTPSGQFGTRLQGGDDSASARYIFTKLEPISRHLFNEMDDALLN--- 913

Query: 157  TYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
             Y EE+ E   P  +    P +L NG+ GI VGMAT+IP  +  ++ E  +  +DN    
Sbjct: 914  -YLEEEGESIQPDYYVPIIPMVLVNGSEGIGVGMATTIPLFSPIDLIEQIICRLDN---- 968

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR-----VRARWCVEEVGRGSWCI 268
                               V   + I+  YR  +G  +      +    ++  G+G   +
Sbjct: 969  -------------------VPPLKKIIPWYRGFKGTIQPNLKSYKTNGVIKFDGKG---L 1006

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            V++E+P     S   + + +LI    I   ++   E++    I+L  +      DL    
Sbjct: 1007 VISELPIGKWTSDYKDVLNDLIEKDVIRGFQEANTENSVHFNILLSNQQMEEMEDLSENE 1066

Query: 329  IFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +  L  + +   LN+ V     ++ +    + I+  +   R E   +R S  M ++ +++
Sbjct: 1067 MITLFKLSSNLHLNLTVFDEKNKIVKYESPEEIIDHFFNIRLEFYNKRRSHLMASLTQQI 1126

Query: 388  EILKGLLIAYLNIDEIIAI--IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
            + L    I +L   E IA   ++ + + K  ++      E+Q D             EEY
Sbjct: 1127 KRLSS-TIKFL---ETIASGKLKIQGRTKQQLIDDL---ESQHDF-------GSHTPEEY 1172

Query: 446  QIKSELDNLLAEKEKIDSL---LNSGKQQWNQI---------ACEIREVKEIFSKSTDLG 493
            Q    L  L   KE+ID+L   LN  + ++NQI           +++++KE   KS D  
Sbjct: 1173 QHLFSLSILDITKERIDNLQSQLNKRQVEFNQIKDSDSSSLWKADLKQLKEYLEKSQDFQ 1232

Query: 494  RR 495
            ++
Sbjct: 1233 KK 1234


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDG-DSAAAYRYTE 133
            D   S AA RYTE
Sbjct: 61  PDDPKSFAAMRYTE 74


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 51/66 (77%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AMSE+GLD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 117 NFGNID 122
           N+G  D
Sbjct: 61  NWGAPD 66


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 195/441 (44%), Gaps = 44/441 (9%)

Query: 26   LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            + E  + +++   K R++P L DG K   R++I  + +     G    K A++   V  K
Sbjct: 697  INEELIKFSIEDCK-RSLPHLIDGLKESQRKVIFGLKQWN---GKNNIKVAQLGAFVAQK 752

Query: 86   L-HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVA 140
              + HG+Q+++D+++++AQ FV     PL+   G FG     G  AA+ RY       + 
Sbjct: 753  TDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKDAASPRYIFVNQPPIL 812

Query: 141  ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              I +  D+  +++       D EPV +    P +  NG+ G+  G + +IP  N  EI 
Sbjct: 813  NKIFRPEDDPILNYT-----LDGEPVFYAPVIPLICINGSVGVGTGFSCNIPMFNPSEII 867

Query: 201  EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            +     I+  E   + + +Y       TG I            + G G +        E 
Sbjct: 868  DGLKQWINMREQGEKYVFKYKPWYKGFTGKI-----------EKNGSGRYISYGTLSNEA 916

Query: 261  VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               G +   V+E+P  +   +  E   +   +  I   ++  + +  + +I       S 
Sbjct: 917  SNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYSEVTTVNFKI-------SS 969

Query: 321  DPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L +E++ + S + T    NM +    G++ +   L+GI++ +   R ++  +R  + 
Sbjct: 970  EHELTIENLKLRSYIHTS---NMVMFDHEGKIHKYETLNGIMQRFCKERIKIYEKRRQYM 1026

Query: 380  MQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            +Q +++ + I    K  +   +N  + I I+  ED+    + + ++ +   E + D +LN
Sbjct: 1027 LQKLNKSLTISENKKRFMEDVMN--QKIKILLQEDEVVHQQLLDMNYYKDDEGEFDYLLN 1084

Query: 434  LRLRSLRKLEEYQIKSELDNL 454
            + +   RK    ++ S++D+L
Sbjct: 1085 MNIGGFRKKNVDKLISKIDDL 1105


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 62/81 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVSF 81


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 179/396 (45%), Gaps = 53/396 (13%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 776  TFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FKR 828

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGN--ID 122
              KK  ++V   G V G   + HG+ S+  ++V LAQ FV    L  +   GNFG+    
Sbjct: 829  NLKKDMKVVELAGHVSGMTAYQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQG 888

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYNE+D E   P ++    P +L NG
Sbjct: 889  GADCASARYIYTRLSPFARRVFNQQDEPLL----TYNEDDGEKIEPELYVPVVPLILING 944

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
              GI  G ++SIP++N ++I      ++D  E   E +  +  G      G +       
Sbjct: 945  ADGIGTGWSSSIPNYNPEDIVANLKRMMDGEE--PEPMQPWFRG----FNGEVTP----- 993

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LL 298
                   +G  R +    + E+      + +TE+P +       +K+ ++I A++ P  +
Sbjct: 994  -------QGPDRYKFSGRIHELNDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFI 1044

Query: 299  EDIRDESAE-DVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSM---GRVP 352
            +D +D +    V  V+    + L    D  +E  F LS    R     N+++    GR+ 
Sbjct: 1045 KDYKDYNTHTKVHFVIQMDEKHLKAAVDEGLEEKFKLS----RTIATTNLVAFDPEGRIT 1100

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
            +   +  ILKE+ A R +   RR   ++  + ++++
Sbjct: 1101 KYATVSDILKEFFAVRLKYYERRKQHQLSELQKQLD 1136


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 57/80 (71%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
          + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      K
Sbjct: 8  DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67

Query: 74 KSARIVGEVIGKLHPHGDQS 93
          KSARI G+V+GK HPHGD S
Sbjct: 68 KSARITGDVMGKYHPHGDSS 87


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 46/269 (17%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +AL T++ RAIP+L DG KPV R ++H   ++       + K A + G      + HG+ 
Sbjct: 19  FALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGAAASLGYHHGEV 78

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S  D+   +A  +    P++ G+GNFG+     AAA RY E R+           D    
Sbjct: 79  SAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRVH----------DNFRK 128

Query: 153 DFRDT-----YNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA-LA 205
            F+DT     + ++D   P  +    P +L NG  GI  G AT+I  H+   I E   LA
Sbjct: 129 YFKDTEVAPAHKDDDHIPPAYYLPIIPMVLINGVQGIGTGFATNILPHSEASIIECTKLA 188

Query: 206 L---IDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           L   +D  P++   +    ++  D        E++ S+  SY+L               +
Sbjct: 189 LQGKLDKEPQVQFPQFKGTVVCND--------ENKYSLFGSYKL---------------I 225

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           G+    I +TEIPY+  ++  +E   +++
Sbjct: 226 GKTQ--IEITEIPYKYDRADYVENCLDIL 252


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDF 154
           EAR++Q++  +L+ +D++ VDF
Sbjct: 61  EARLSQLSGELLKDIDKNTVDF 82


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 54/71 (76%)

Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
          + ++  +E+ +L Y++S I  RA+PDLRDG KPVHRRII+AM+++ +      KKSARIV
Sbjct: 16 IDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLKITSDTPHKKSARIV 75

Query: 80 GEVIGKLHPHG 90
          GEVIGK HPHG
Sbjct: 76 GEVIGKYHPHG 86


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 5   KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 63


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 179/401 (44%), Gaps = 63/401 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++        F  
Sbjct: 666  TFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTC------FKR 718

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGN--ID 122
              KK  ++V   G V G   + HG+ S+  ++V LAQ FV    L  +   GNFG+    
Sbjct: 719  NLKKDMKVVELAGHVSGMTAYQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQG 778

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANG 179
            G   A+ RY   R++  A  +    DE  +    TYNE+D E   P ++    P +L NG
Sbjct: 779  GADCASARYIYTRLSPFARRVFNQQDEPLL----TYNEDDGEKIEPELYVPVVPLILING 834

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRES 238
              GI  G ++SIP++N ++I      ++D  E   ++       G   P G         
Sbjct: 835  ADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEPMQPWFRGFNGEVTPQG--------- 885

Query: 239  IVESYRL-GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
              + Y+  GR          + E+      + +TE+P +       +K+ ++I A++ P 
Sbjct: 886  -PDRYKFSGR----------IHELNDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPS 932

Query: 297  LLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM------- 348
             ++D +D +    V  V+      +D   L  ++     +E +F L+  + +        
Sbjct: 933  FIKDYKDYNTHTKVHFVI-----QMDEKHLKAAV--EEGLEEKFKLSRTIATTNLVAFDP 985

Query: 349  -GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
             GR+ +   +  ILKE+ A R +   RR   ++  + ++++
Sbjct: 986  EGRITKYATVSDILKEFFAVRLKYYERRKQHQLSELQKQLD 1026


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 4   AKFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 63

Query: 129 YRYTEARMTQ 138
            RYTE+R+++
Sbjct: 64  MRYTESRLSK 73


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 61/81 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +L+ ++++ V F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 51/68 (75%)

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EP+V P+  PNLL NG +GIAVGMAT IP+HN+ E+ +  ++ I N  ISI +L+++I
Sbjct: 1   EKEPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHI 60

Query: 222 IGPDFPTG 229
            GPDFPTG
Sbjct: 61  KGPDFPTG 68


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 144/268 (53%), Gaps = 18/268 (6%)

Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           ++RDES  D +R+V+  K  ++  ++++ ++F  + ME  F + M  ++  + P+V  L 
Sbjct: 2   EVRDESDRDGIRLVIELKRDAM-SEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLL 59

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            +LK +L HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+   + +  + 
Sbjct: 60  ELLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARD 119

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++++F L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I
Sbjct: 120 GLMAKFGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENII 179

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ E+K  F        +     ++         + +I  E + V I++RG+I+ + S
Sbjct: 180 RDELLEIKSKF--------KCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPS 231

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRI 563
            S +      K G   K+A+  +  D I
Sbjct: 232 KSYEKQ----KRGGKGKVAVTTYDDDFI 255


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 60/82 (73%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDF 154
           EAR++Q++  +L+ +D+  VDF
Sbjct: 61  EARLSQLSGELLKDIDKSTVDF 82


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 183/402 (45%), Gaps = 54/402 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMAD-NLRSIPSMVDGMKPGQRKVMYTVMKRNI- 818

Query: 68   FGAAFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN- 120
                 KK  +++   G+V     + HGD S++ +++ LAQ FV       +   GNFG+ 
Sbjct: 819  -----KKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSR 873

Query: 121  -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
               G  A++ RY   R++  A  I    D+  + + +   +E  EP V+    P +L NG
Sbjct: 874  LKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKE-IEPWVYVPVVPMILING 932

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRES 238
              GI  G +TSIP++N ++I +    +I   EI  ++   +   G               
Sbjct: 933  ADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKG--------------- 977

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-L 297
              E  +LG   ++      +++V      + VTE+P +      I K+ E+I A + P L
Sbjct: 978  --EVTQLGPDKYKFSG--LIKQVSDKE--LEVTELPIRTWTQDFINKLEEMIKADKAPSL 1031

Query: 298  LEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-------- 348
            ++D +D  +  DV +VL    +++   L  E       +E +F L+  + +         
Sbjct: 1032 IKDYKDYNTNSDVHLVLQLDEKNVKEPLTQEF------LEEKFKLSKTIATTNLVAFNAE 1085

Query: 349  GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            G++ +   ++ IL+E+   R +   +R   ++  +   +E L
Sbjct: 1086 GQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEKL 1127


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 183/402 (45%), Gaps = 54/402 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMAD-NLRSIPSMVDGMKPGQRKVMYTVMKRNI- 818

Query: 68   FGAAFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN- 120
                 KK  +++   G+V     + HGD S++ +++ LAQ FV       +   GNFG+ 
Sbjct: 819  -----KKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSR 873

Query: 121  -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
               G  A++ RY   R++  A  I    D+  + + +   +E  EP V+    P +L NG
Sbjct: 874  LKGGADASSARYIHTRLSPFARKIFHPHDDPILKYLEDDGKE-IEPWVYVPVVPMILING 932

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEIS-IEKLLEYIIGPDFPTGGIIVESRES 238
              GI  G +TSIP++N ++I +    +I   EI  ++   +   G               
Sbjct: 933  ADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKG--------------- 977

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-L 297
              E  +LG   ++      +++V      + VTE+P +      I K+ E+I A + P L
Sbjct: 978  --EVTQLGPDKYKFSG--LIKQVSDKE--LEVTELPIRTWTQDFINKLEEMIKADKAPSL 1031

Query: 298  LEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-------- 348
            ++D +D  +  DV +VL    +++   L  E       +E +F L+  + +         
Sbjct: 1032 IKDYKDYNTNSDVHLVLQLDEKNVKEPLTQEF------LEEKFKLSKTIATTNLVAFNAE 1085

Query: 349  GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            G++ +   ++ IL+E+   R +   +R   ++  +   +E L
Sbjct: 1086 GQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQIELEKL 1127


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 3   AKFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 62

Query: 129 YRYTEARMTQ 138
            RYTE+R+++
Sbjct: 63  MRYTESRLSK 72


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 139/258 (53%), Gaps = 17/258 (6%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR
Sbjct: 2   IRVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHR 59

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E
Sbjct: 60  KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  
Sbjct: 120 LQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSK 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F    D+ R      ++         + +I  E + V I++RG+I+ + S   +      
Sbjct: 180 F----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ---- 227

Query: 546 KEGDSLKIALHAHTTDRI 563
           K G   K+A+  +  D I
Sbjct: 228 KRGGKGKLAVTTYDDDFI 245


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIT 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  E +RI +
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAI 104


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 33 YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
          YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 22 YAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 81

Query: 93 SVYDS 97
          S+Y++
Sbjct: 82 SIYEA 86


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 139/258 (53%), Gaps = 17/258 (6%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR
Sbjct: 1   IRVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHR 58

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E
Sbjct: 59  KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSE 118

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  
Sbjct: 119 LQANAILDMKLGRLTGLEREKIENELAELMKEITRLEEILKSETLLENLIRDELKEIRSK 178

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F    D+ R      ++         + +I  E + V I++RG+I+ + S   +      
Sbjct: 179 F----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ---- 226

Query: 546 KEGDSLKIALHAHTTDRI 563
           K G   K+A+  +  D I
Sbjct: 227 KRGGKGKLAVTTYDDDFI 244


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 173/396 (43%), Gaps = 79/396 (19%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++        F  
Sbjct: 772  TFLDHSVSKISYTDFINKELILFSMAD-NVRSIPSVVDGLKPGQRKVLYTC------FRR 824

Query: 71   AFKKSARIV---GEVIG-KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
              KK  ++V   G V G   + HGD S+  ++V LAQ F                 G   
Sbjct: 825  NLKKDMKVVELAGHVSGMTAYQHGDISLQQTIVGLAQSF----------------GGSDC 868

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE---PVVFPSKFPNLLANGTSGI 183
            A+ RY   R++  A  +    D+  +    TYNE+D E   P ++    P +L NG  GI
Sbjct: 869  ASARYIYTRLSPFARRVFHAHDDPLL----TYNEDDGEKIEPEIYVPVVPMILVNGADGI 924

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++SIP++N ++I +    L+D  E     +  +  G  F TG +            
Sbjct: 925  GTGWSSSIPNYNPEDIVDNLKRLMDGEET--RPMQPWFRG--F-TGEVT----------- 968

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIR 302
                GG R +    ++E G     + +TE+P +       +K+ ++I A++ P  ++D +
Sbjct: 969  --DVGGDRFKFSGIIKETGEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYK 1024

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------GRVPQV 354
            D +          KN        M+S  +   +E +F L+  V +         GR+ + 
Sbjct: 1025 DYNTH-------TKN--------MKSA-LSEGLEEKFKLSKTVATTNLVAFDPEGRITKY 1068

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
              +D ILKE+  +R +   +R  +++  + + ++ L
Sbjct: 1069 ATVDDILKEFYTYRLKFYEKRKQYQLSQLQKELDKL 1104


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  E +RI +
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAI 104


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE
Sbjct: 1   SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 60

Query: 134 ARMTQVAEL 142
           +R+++ +EL
Sbjct: 61  SRLSKYSEL 69


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  
Sbjct: 1   SELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 122 DG-DSAAAYRYTE 133
           D   S AA RYTE
Sbjct: 61  DDPKSFAAMRYTE 73


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 160/347 (46%), Gaps = 35/347 (10%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 829  RSIPSVLDGLKPGQRKVLYGCIKKKLKSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 886

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      ++   G+FG+    G   +A RY    + ++   I   +D+   ++  
Sbjct: 887  LAQNFVGSNNINILKPNGSFGSRAAGGKDFSAARYIFTELNEITRKIFNPLDDPLYNYVQ 946

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T+IPS+N +++      L++  E  +++
Sbjct: 947  D-DEQTVEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVANIKRLMNGEE--LQE 1003

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G D    G I +S          G   +++  R  +E+VG     + +TE+P +
Sbjct: 1004 MTPWYKGWD----GDIEQS----------GPQKYKITGR--IEQVGDNE--VDITELPVK 1045

Query: 277  VQKSRLIEKIAELIIAKRIP-LLEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFML 332
            V  +   E +      ++ P  ++D+ +     ++ V+   +  +   L   LME   ++
Sbjct: 1046 VWTNNYKEFLLAGFGTEKTPAWIKDMEEHHTTSIKFVVKLTDAEMQKSLRMGLMERFKLI 1105

Query: 333  SDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            S +      NM    SMGR+ +   +  ILKE+   R E   +R S+
Sbjct: 1106 SSLSLG---NMVAFDSMGRIKKYTDVLEILKEFYYLRLEYYEKRKSY 1149


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 61/81 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           ARIVG+V+GK HPHGD S+Y+++VR+AQPF  R PL+ G GNFG++DGD AAA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 174/362 (48%), Gaps = 24/362 (6%)

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
           R P ++ L   L   + H  +V+ +   + +  +  R+EI++GL+     IDEII IIR 
Sbjct: 15  RTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRA 74

Query: 410 EDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            D     K  ++  F+ T NQ +AI+ +RL +L + + + +++E ++L  + + +   + 
Sbjct: 75  SDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIK 134

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S + + N +  ++ E    F K     R+   F E  +A+    +  MIEK+ + +VIS 
Sbjct: 135 SLQVRKNYLKQKMIE----FKKEFGYQRKTKLFDEFIKAE--VNEDQMIEKQSLNLVISR 188

Query: 527 RGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            G+I+++   S + S    L  K  D L      ++ DRIL++++  K   L A  +   
Sbjct: 189 DGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 248

Query: 584 RGH--GEAIQLLIDLNHNQDIVTAFVYDSTCKL----LVVSSKGNAFI-VEESEIIAN-T 635
           R    GE +      + N+ +V  +V +   K+    LV+ SK N    +E +E+  N  
Sbjct: 249 RWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKN 308

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL---LIFSIDQIPEMSR-GKGVRLQS 691
            K  + +K++  + +     +  DH   V    KL   L+F + +I  ++R  KG+++  
Sbjct: 309 SKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMK 368

Query: 692 YK 693
            K
Sbjct: 369 LK 370


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 61/81 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDF 154
           A+++Q++E +++ ++++ V F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           R+IP + DG KP  R++++A     +   +  +K  R+ G+V  I   H HG+ S+  ++
Sbjct: 667 RSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVERLAGKVASIAGYH-HGEVSLSGTI 725

Query: 99  VRLAQPFV---QRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           V +AQ FV      PL+   G++G     G   +A RY       +  ++    D+D  +
Sbjct: 726 VGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAARYLSTYALPLTRILFPAEDDDLYE 785

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            R   + E +EPV +    P +L NG  GI  G +T IPSHN  +ICE     +DN E
Sbjct: 786 -RVLEDNELNEPVNYLPILPMILVNGACGIGTGHSTEIPSHNPLDICEWIRCWLDNKE 842


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 161/358 (44%), Gaps = 35/358 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP L DG KP  R+I+ A  +  L       + +  V E     + HG+QS+  ++V+
Sbjct: 808  RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLSGYVAEQTS--YHHGEQSLNSTIVK 865

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +A  FV     PL++  G FG     G  +A+ RY   ++  VA  +   +D+  ++   
Sbjct: 866  MAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYIFTKLEPVARYLFNELDDPLLN--- 922

Query: 157  TYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
             Y EE+ E   P  +    P LL NG+ GI VGM+TSIP  +  +I +  +  ++N +++
Sbjct: 923  -YLEEEGESIQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQLMLRLNN-QVA 980

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++KL+ +  G      G I   R +              R    ++ VGR    + +TE+
Sbjct: 981  LKKLIPWYRG----FKGTISPDRHT-------------YRTNGVIKLVGRN---LEITEL 1020

Query: 274  PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
            P     S   E + +LI    I   ++   E++    I+L         DL    +  L 
Sbjct: 1021 PIGRWTSDYKEVLNDLIDKDVIKSFQESNTENSVHFTILLNNNQLEQMEDLTENELIKLF 1080

Query: 334  DMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +      ++       ++ ++  ++ I+ ++   R +   +R  + ++++D +++ L
Sbjct: 1081 KLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRLQFYGKRREYLLKSLDNQIKRL 1138


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  E +RI +
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 104


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 183/439 (41%), Gaps = 66/439 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
            +R+IP L DGFKP  R+I +  +  GL+      K A++ G V  ++ + HG+ S+  ++
Sbjct: 1058 QRSIPSLVDGFKPSQRKIFYGANLRGLEKDQV--KVAQLAGFVSDRVAYHHGEASLMGAI 1115

Query: 99   VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV      L+  +G FG+  + G  +A+ RY   ++ +VA LI +  D   ++ 
Sbjct: 1116 IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILN- 1174

Query: 155  RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
               Y  +D    EP  +    P +L NG +GI  G +TSIP ++ QE+ E    LI    
Sbjct: 1175 ---YINDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIK--- 1228

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
                       G  +          E  ++  +L    ++V   + +++       IVV 
Sbjct: 1229 -----------GEKYKKIHPYYHKFEGKLK--KLDTTSYQVSGTYHIDKKNN----IVVE 1271

Query: 272  EIP---YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN--RSLDPDLLM 326
            E+P   +     + +EK+ +              + + E + I L  KN    LD  L M
Sbjct: 1272 ELPVGEWTTNYKQFLEKMLDT----DTNFTNYDNNSTDEKILITLKFKNIPTKLDEKLKM 1327

Query: 327  ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
                 L+++             G + +   +D I+  +   R E  + R  + ++    +
Sbjct: 1328 NKKINLTNLHA-------YTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLLEIYKHQ 1380

Query: 387  VEILKGLLIAYLNIDEIIAIIRN----------EDKPKPVMVSRFSLTENQVDAILNLRL 436
            ++I+K  +     I     II N          E K  P M       E   D +L + L
Sbjct: 1381 MDIMKYKVKFIKEIINKTLIINNKKKLIIEQDLETKKYPKMGKNLK-DEINYDYLLGMNL 1439

Query: 437  RSLRK-----LEEYQIKSE 450
             SL K     LE+ +I+ E
Sbjct: 1440 YSLTKEKIEELEKQKIEKE 1458


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  E +RI +
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 104


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 138/257 (53%), Gaps = 17/257 (6%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K  ++  ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+
Sbjct: 1   RVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRK 58

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
            V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E 
Sbjct: 59  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSEL 118

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F
Sbjct: 119 QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF 178

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               D+ R      ++         + +I  E + V I++RG+I+ + S   +      K
Sbjct: 179 ----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ----K 226

Query: 547 EGDSLKIALHAHTTDRI 563
            G   K+A+  +  D I
Sbjct: 227 RGGKGKLAVTTYDDDFI 243


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 164/374 (43%), Gaps = 62/374 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    +K  ++V   G V G   + HGD S+  
Sbjct: 878  RSIPSVVDGLKPGQRKVLYTC------FKRNVRKDIKVVELAGYVSGMTAYQHGDVSLQQ 931

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  I    DE  +
Sbjct: 932  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLL 991

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP ++    P +L NG  GI  G +TSIP++N ++I      L+D 
Sbjct: 992  ----TYNVDDGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDG 1047

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWC 267
             P + ++       G     GG          E Y+  GR          + +VG     
Sbjct: 1048 EPLVPMQPWFRGFTGEVVSLGG----------ERYKFSGR----------ISQVGENE-- 1085

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLL 325
            + +TE+P +       +++ E+I A+++P  ++D +D  +   V  V+      LD    
Sbjct: 1086 VEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVI-----QLDEKHA 1140

Query: 326  MESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++I     +E +F L+  + +         GR+ +    + IL+E+ + R +   +R  
Sbjct: 1141 AKAI--AEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKM 1198

Query: 378  FRMQAIDRRVEILK 391
                    RVE L+
Sbjct: 1199 PLWSLTQERVEKLR 1212


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus BV-PW1]
          Length = 1101

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 183/439 (41%), Gaps = 66/439 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
            +R+IP L DGFKP  R+I +  +  GL+      K A++ G V  ++ + HG+ S+  ++
Sbjct: 671  QRSIPSLVDGFKPSQRKIFYGANLRGLEKDQV--KVAQLAGFVSDRVAYHHGEASLMGAI 728

Query: 99   VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV      L+  +G FG+  + G  +A+ RY   ++ +VA LI +  D   ++ 
Sbjct: 729  IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILN- 787

Query: 155  RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
               Y  +D    EP  +    P +L NG +GI  G +TSIP ++ QE+ E    LI    
Sbjct: 788  ---YINDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIK--- 841

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
                       G  +          E  ++  +L    ++V   + +++       IVV 
Sbjct: 842  -----------GEKYKKIHPYYHKFEGKLK--KLDTTSYQVSGTYHIDKKNN----IVVE 884

Query: 272  EIP---YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN--RSLDPDLLM 326
            E+P   +     + +EK+ +              + + E + I L  KN    LD  L M
Sbjct: 885  ELPVGEWTTNYKQFLEKMLDT----DTNFTNYDNNSTDEKILITLKFKNIPTKLDEKLKM 940

Query: 327  ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
                 L+++             G + +   +D I+  +   R E  + R  + ++    +
Sbjct: 941  NKKINLTNLHA-------YTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLLEIYKHQ 993

Query: 387  VEILKGLLIAYLNIDEIIAIIRN----------EDKPKPVMVSRFSLTENQVDAILNLRL 436
            ++I+K  +     I     II N          E K  P M       E   D +L + L
Sbjct: 994  MDIMKYKVKFIKEIINKTLIINNKKKLIIEQDLETKKYPKMGKNLK-DEINYDYLLGMNL 1052

Query: 437  RSLRK-----LEEYQIKSE 450
             SL K     LE+ +I+ E
Sbjct: 1053 YSLTKEKIEELEKQKIEKE 1071


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 49/366 (13%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HG+ S+  
Sbjct: 741  RSIPSVVDGLKPGQRKVLYTC------FRRNLKKDMKVVELAGHVSGTTAYQHGEGSLQQ 794

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R+   A  +    D+  +
Sbjct: 795  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIYTRLWPFARRVFHNHDDPLL 854

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYNE+D    E  V+    P +L NG  GI  G ++S P++N ++I E    ++D 
Sbjct: 855  ----TYNEDDGAKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNPEDIVENLKRMMDG 910

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             P   ++       G                 E   +G+  F+      ++E G     +
Sbjct: 911  EPLKPMQPWFRGFTG-----------------EVTAVGQDRFKFSG--IIKETGDKE--V 949

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLL- 325
             +TE+P +       +K+ ++I A++ P  ++D +D  +   V  V+    + +   +  
Sbjct: 950  EITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHMKTAIAE 1009

Query: 326  -MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +E  F LS  +T    N+      R+ +   ++ I+KE+ A R +   RR  +++  + 
Sbjct: 1010 GLEEKFKLS--KTMTTTNLVAFDPERITKYASVEDIMKEFYAVRLKYYERRKQYQLSEMQ 1067

Query: 385  RRVEIL 390
            + ++ L
Sbjct: 1068 KELDKL 1073


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 131/244 (53%), Gaps = 16/244 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ F + M  +   + P++  L  +L  +L HR+ V+ RR+ F +Q 
Sbjct: 9   EIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQK 67

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L
Sbjct: 68  ARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRL 127

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    D+ R     
Sbjct: 128 TGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF----DVPR----I 179

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++         + +I  E + V I++RG+I+ + S   +      K G   K+A+  + 
Sbjct: 180 TQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQ----KRGGKGKLAVTTYD 235

Query: 560 TDRI 563
            D I
Sbjct: 236 DDFI 239


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 31/284 (10%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           + T+IPSHN+ ++  A+++ + N +I+ ++L   I GPDF TGGII+  ++++   Y  G
Sbjct: 1   ILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTG 60

Query: 247 RGGFRVRARWCVEEV----------------------GRGSWCIVVTEIPYQVQKSRLIE 284
           +G   +R+    E V                       +    +++  +P  V+ + LIE
Sbjct: 61  KGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIE 120

Query: 285 KIAELIIAKRIP---LLEDIRDESAED-VRIVLFPKNRSLDPDL--LMESIFMLSDMETR 338
            I  ++  K+     +L  IRDES ++ +RIVL  +  S    +   +  +F  + ME  
Sbjct: 121 NIVTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEIN 180

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +  N   +          L   L+ W  +R + + +    +   + + + I+   L    
Sbjct: 181 YHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKDLNIIDLYLTIQK 240

Query: 399 NIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            I +II+ I   +N ++ +  + S F L ++Q+  IL+++++ L
Sbjct: 241 KILDIISFIHKNQNIEQIQNYLKSNFKLNDDQIKYILSMKIQKL 284


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 199/471 (42%), Gaps = 65/471 (13%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                   + A  V E     + HG+QS+  ++V LAQ +V     PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L+   E+   K   +       TG I  E RE     
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF-----TGTI--EERE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPLLE 299
                +G F       V   G     + +TE+P   +  Q  + +E + E  I   I   E
Sbjct: 874  ----KGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLREREIV--IQYRE 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-----MNVLSM---GRV 351
               D +  D  + + P+        ++        +E R  L       N+++    G++
Sbjct: 924  HNTDVTV-DFEVFIHPE--------VLRQWVAQGCVEERLQLREYIHATNIIAFDREGKI 974

Query: 352  PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
             + +  + +LKE+   R E   RR  F ++ + R          A L ++ ++  + NE 
Sbjct: 975  TKYLDAESVLKEFYLVRLEYYARRREFLLEQLQR----------AALKLENMVRFV-NEV 1023

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                 +V+R S+     D + +L+ R        Q K      + ++E  D
Sbjct: 1024 IDGTFIVTRRSMK----DVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEDND 1070


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 184/395 (46%), Gaps = 51/395 (12%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T+++ N+ A+ +   + +  + ++L+    R+IP + DGFKP  R+++    ++ L +  
Sbjct: 660  TVLDPNLDAIPISDFINKELILFSLAD-NVRSIPSVLDGFKPGQRKVLFCCFKINLTYEI 718

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
                 A  V E     + HG++S+  ++V LAQ FV      L+   G+FG+    G  A
Sbjct: 719  KVGTLAAKVSEKTS--YHHGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDA 776

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGI 183
            AA RY   ++ +VA  I    D+   +    Y E+D    EP  +    P +L NG  GI
Sbjct: 777  AAARYIHTQLNKVARSIFHPSDDALFN----YLEDDGSPIEPEWYLPIIPMVLVNGAEGI 832

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS N  +I +    L+ N E+  E      + P +     +VE     V+ +
Sbjct: 833  GTGWSTNIPSFNPLDIIKNIRHLM-NDEVMDE------MYPWYRGWKGVVEK----VDDH 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDI 301
            R     FR+  +  VE+VG     + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  R-----FRLYGK--VEQVGPN--VLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM 932

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL--NMNVLSM------GRVPQ 353
             ++   D+R ++     +L P+ + ++  +   +  RF L   +N+ +M      G++ +
Sbjct: 933  EEQHTNDIRFII-----TLTPEEMAKTKKI--GVYDRFKLVSQVNLKNMVAFDAHGKIRK 985

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +  IL E+   R E   +R  +  Q +   VE
Sbjct: 986  YDTVLDILTEFYYVRLEFYQKRKDYMSQKLQWTVE 1020


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L E  +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E     
Sbjct: 104 SNHLTE--LHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQN 161

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + F K A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA
Sbjct: 162 RSKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAA 221

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEED-----SEPVVFPSKF-----PNLLAN 178
            RY   R+ Q              +F D Y + +      EP   P ++     P +LAN
Sbjct: 222 PRYVFCRVHQ--------------NFWDIYRDIELAPVHPEPEHLPPRYYLPVIPMVLAN 267

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           G  GIA G AT+I  H+ + + +   A I+   I
Sbjct: 268 GVKGIATGYATNIFPHSYKSLIKCTKAAIEGKPI 301


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 168/390 (43%), Gaps = 55/390 (14%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L E  +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E     
Sbjct: 104 SNHLTE--LHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQN 161

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + F K A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA
Sbjct: 162 RSKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAA 221

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEED-----SEPVVFPSKF-----PNLLAN 178
            RY   R+ Q              +F D Y + +      EP   P ++     P +LAN
Sbjct: 222 PRYVFCRVHQ--------------NFWDIYRDIELAPVHPEPEHLPPRYYLPVIPMVLAN 267

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIA G AT+I  H+ + + +   A I+   I     LE +  P+F   G+I    + 
Sbjct: 268 GVKGIATGYATNIFPHSYKSLIKCTKAAIEGKPIP---RLE-VQFPEF--SGVIRRVSDK 321

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR---LIEKIAELIIAKRI 295
            +E      G + +           G   + +TE+P +  +     L++K+ +    K +
Sbjct: 322 TIEV----EGLYEL----------SGQTKLTITELPVKFDRLSYVILLDKLKDQ--GKIV 365

Query: 296 PLLEDIRDESAEDV---RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRV 351
              E  ++    DV   R   F +    +P+   E I  +  +      N+ VL+  G++
Sbjct: 366 SYKEQHKNGFRFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKL 425

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            +    + ++++++ HRR+    R  +  Q
Sbjct: 426 AEYECAEDVIRDFVEHRRKFTAERVEYERQ 455


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 164/374 (43%), Gaps = 62/374 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++        F    +K  ++V   G V G   + HGD S+  
Sbjct: 701  RSIPSVVDGLKPGQRKVLYTC------FKRNVRKDIKVVELAGYVSGMTAYQHGDVSLQQ 754

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  I    DE  +
Sbjct: 755  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLL 814

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                TYN +D    EP ++    P +L NG  GI  G +TSIP++N ++I      L+D 
Sbjct: 815  ----TYNVDDGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDG 870

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWC 267
             P + ++       G     GG          E Y+  GR          + +VG     
Sbjct: 871  EPLVPMQPWFRGFTGEVVSLGG----------ERYKFSGR----------ISQVGENE-- 908

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLL 325
            + +TE+P +       +++ E+I A+++P  ++D +D  +   V  V+      LD    
Sbjct: 909  VEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVI-----QLDEKHA 963

Query: 326  MESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             ++I     +E +F L+  + +         GR+ +    + IL+E+ + R +   +R  
Sbjct: 964  AKAI--AEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKM 1021

Query: 378  FRMQAIDRRVEILK 391
                    RVE L+
Sbjct: 1022 PLWSLTQERVEKLR 1035


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 123 G-DSAAAYRYTE 133
              S AA RYTE
Sbjct: 61  DPKSFAAMRYTE 72


>gi|332711872|ref|ZP_08431802.1| DNA topoisomerase [Lyngbya majuscula 3L]
 gi|332349200|gb|EGJ28810.1| DNA topoisomerase [Lyngbya majuscula 3L]
          Length = 86

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 54/79 (68%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
          N L   NV   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6  NLLENSNVIPTALHLEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70 AAFKKSARIVGEVIGKLHP 88
            ++K AR+VG+V+GK+ P
Sbjct: 66 RPYRKCARVVGDVLGKISP 84


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 182/419 (43%), Gaps = 53/419 (12%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                   + A  V E     + HG+QS+  ++V LAQ +V     PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L+   E+   K   +       TG I  E RE     
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF-----TGTI--EERE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPLLE 299
                +G F       V   G     + +TE+P   +  Q  + +E + E  I   I   E
Sbjct: 874  ----KGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLREREIV--IQYRE 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-----MNVLSM---GRV 351
               D +  D  + + P+        ++        +E R  L       N+++    G++
Sbjct: 924  HNTDVTV-DFEVFIHPE--------VLRQWVAQGCVEERLQLREYIHATNIIAFDREGKI 974

Query: 352  PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN--IDEIIAIIR 408
             + +  + +LKE+   R E   RR  F ++ + R    L+  ++ ++N  ID    + R
Sbjct: 975  TKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLEN-MVRFVNEVIDGTFIVTR 1032


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 182/419 (43%), Gaps = 53/419 (12%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
                   + A  V E     + HG+QS+  ++V LAQ +V     PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L+   E+   K   +       TG I  E RE     
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF-----TGTI--EERE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPLLE 299
                +G F       V   G     + +TE+P   +  Q  + +E + E  I   I   E
Sbjct: 874  ----KGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLREREIV--IQYRE 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-----MNVLSM---GRV 351
               D +  D  + + P+        ++        +E R  L       N+++    G++
Sbjct: 924  HNTDVTV-DFEVFIHPE--------VLRQWVAQGCVEERLQLREYIHATNIIAFDREGKI 974

Query: 352  PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN--IDEIIAIIR 408
             + +  + +LKE+   R E   RR  F ++ + R    L+  ++ ++N  ID    + R
Sbjct: 975  TKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLEN-MVRFVNEVIDGTFIVTR 1032


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 1058

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 193/437 (44%), Gaps = 62/437 (14%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DG KP  R+I+ +  +  L       + A    E  G  + HG+ S+  ++V
Sbjct: 645  ERSIPSVVDGLKPSQRKILFSALKRNLVQEIKVAQFAGYTSENAG--YHHGEASLQGAIV 702

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ +V      L+  +G FG+    G  +A+ RY   +++     I    DE  ++  
Sbjct: 703  GMAQDYVGSNNINLLLPRGQFGSRLHGGKDSASARYIFTQLSPNTRDIFHKADERLLN-- 760

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y E+D    EP  +    P LL NG+SGI  G +T+IP++N ++I +    LI+N   
Sbjct: 761  --YLEDDGDRIEPEYYVPTIPFLLVNGSSGIGTGFSTNIPAYNPKDIVDNVKRLINN--- 815

Query: 213  SIEKLLEYIIGPDFP----TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              E +L     P  P      G I E+   +        G + ++ +            +
Sbjct: 816  --ETML-----PMTPWYRGFKGDIKETSPGVFTC----SGVYDIKGK-----------TV 853

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL-ME 327
             V+E+P     +   E + E +I K+I  + D R+   E           +LDP++L +E
Sbjct: 854  TVSELPVGTWTNDYKEHL-ETLIEKKI--VADFRERHTELNVHFEIDFVGTLDPNILKLE 910

Query: 328  SIFMLSDMETRFPLNMNVLSMGRVPQV-MPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            S    ++M    P        G++ +   PL+ I+ +W   R+E   +R    ++ +  R
Sbjct: 911  STIRTTNMHAFDP-------SGKIKKYDSPLE-IIADWFTTRKEFYVKRKEDLLKDLKAR 962

Query: 387  VEIL--KGLLIAYLNIDEIIAIIR--NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
            V +   K   I  +N D  + I R   ED  K +   +F   +   D +L +++ SL K 
Sbjct: 963  VLVAQNKSRFITSVN-DGTLVITRRAEEDVIKDLGKLKFYKVDKSFDYLLGMKISSLTKE 1021

Query: 443  EEYQIKSELDNLLAEKE 459
               ++++E   L  EKE
Sbjct: 1022 RAEKLQAEAAAL--EKE 1036


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 48/63 (76%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NID 122
             D
Sbjct: 61  APD 63


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 8/102 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           G  + K HPHGD S+Y++LV +A   +     I  QGNFGN+
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNL 94


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 61/331 (18%)

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  L  G+ P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID 
Sbjct: 1   MVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP 59

Query: 403 IIAIIRNEDKP---KPVMVSR----------------------------------FSLTE 425
           II +IR+   P   K  +V+                                   + LTE
Sbjct: 60  IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E 
Sbjct: 120 QQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           F      G +R T    + AD     + +I +E + V +S++G+++        + +   
Sbjct: 180 F------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 231

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RG-HGEAIQLLID 595
              SA   KE D +   L A+T D IL  S+ G+ Y++    L    RG  G  I  L+ 
Sbjct: 232 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP 291

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKGN 622
           L  ++ I TA +    ++   K+ + ++ G 
Sbjct: 292 LEQDERI-TAILPVTEFEEGVKVFMATANGT 321


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 168/360 (46%), Gaps = 48/360 (13%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPH 89
           L YA+ TI+ RA+ +  DG KPV R +++ + +   D   +F K A + G  + K+ + H
Sbjct: 14  LEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL-GSSVSKIGYNH 69

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           G+ S  D+L  +A  +    P++ G+GNFG+     +A+ RY  A++    +L  + +  
Sbjct: 70  GETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHDNFDLYFKDI-H 128

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
            + + +D    E   P  +    P +L NG  GIA G A +I  H+ + + +A L  +  
Sbjct: 129 LSPEHKDL---EHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVKKAVLEYLAG 185

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            EIS E ++++   P+F  G I        +E  +  + G        VE  G  +   V
Sbjct: 186 KEIS-EPVVKF---PEF-YGKI------EKLEHNKYAQIG-------TVEISGLTA---V 224

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMES 328
           VTEIP     ++ I ++ +L+   +I       DE++E  +  V F +   +      ES
Sbjct: 225 VTEIPTGFDHAKYIIELDKLVEKGKI---SSYVDETSETFQFRVRFKRGAKMTE----ES 277

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +     +++ F  N+NV+      Q+   D +        RE++     FRM  + +R++
Sbjct: 278 VIKTLKLQSTFTQNINVIDENY--QIRHFDDV--------RELVKWFVDFRMSFLPKRIQ 327


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 117 NFGN 120
           NFG+
Sbjct: 61  NFGS 64


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           V E+PY V K+ LIE+IAEL+  KRI  +  I DES  E +RI +
Sbjct: 60  VAELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 104


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 151/309 (48%), Gaps = 39/309 (12%)

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--- 408
           P+V+ L  +L  +L H++EV+ RR+ + +   + R  IL+GL+IA  NID +I+IIR   
Sbjct: 17  PKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLMIALDNIDRVISIIRGSE 76

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           N    K  ++  F L++ Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   
Sbjct: 77  NVQTAKESLMKEFELSDVQAQAIVDMRLRALTGLERAKLEAEYAELIKKIEEYKAILADE 136

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVI 524
           K+    I  EI  + + +        RRT+      ++S  D       +I  EP+ +  
Sbjct: 137 KKLLGVIRTEILVIADKYGDD-----RRTSIGFDEFDISMED-------IIPDEPVVIAR 184

Query: 525 SNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +N G+I+ +   +          +  +   + D ++      +   ++  +  G+AY + 
Sbjct: 185 TNLGYIKRMTLDNFKAQHRGGKGIRGMQTIDQDYIEDLFMTTSHHYLMFFTNTGRAYRMK 244

Query: 577 AGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESE 630
           A  +  +GR   G A+  L+ L   + I TA +    Y+    L + +  G   IV++++
Sbjct: 245 AYEIPEAGRTARGTAVINLLQLQPGETI-TAVIPIREYNDNNYLFMATRNG---IVKKTK 300

Query: 631 II--ANTRK 637
           +   +N RK
Sbjct: 301 VTEYSNIRK 309


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 1]
          Length = 1083

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 143/313 (45%), Gaps = 37/313 (11%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R+IP+L DG K   R+I+++  +  L       + +  V E  G  + HG+ S+  ++V
Sbjct: 663 DRSIPNLMDGLKVSQRKILYSAFKKNLVSEIKVAQFSGYVSEHSG--YHHGESSLNGAIV 720

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      ++   G FG     G  +A+ RY   ++ ++  +I +  D+  +++ 
Sbjct: 721 NMAQTFVGSNNINVLMPNGQFGTRLQGGKDSASERYIFTQLNKITRMIFKKEDDVILNY- 779

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
              N++ +  EPV +    P +L NGT GI  G +T IP  N +E+ +  L  +++P   
Sbjct: 780 --LNDDGTPVEPVFYAPILPMILVNGTKGIGTGFSTDIPCFNPKELIDYILKKLEDP--- 834

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
              + ++I      TG I  E     +      +G + ++ +            I++TE+
Sbjct: 835 -NHIRDFIPYYKHFTGTIEKEDSRRFIT-----KGKYSIQNK-----------TIIITEL 877

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           P  V     I  + + I+  +   L+D  D+S + V         ++D + ++++  + +
Sbjct: 878 PIGVWNEDYITHLEKCIVDNK---LKDYSDQSTDSVIYFKLTLKENMDEEAILKTFKLTT 934

Query: 334 DMETRFPLNMNVL 346
            +      NMN+ 
Sbjct: 935 TLSIN---NMNLF 944


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 48/63 (76%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NID 122
             D
Sbjct: 61  APD 63


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF  RY
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLRY 63


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA R
Sbjct: 5   SHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPPAAMR 64

Query: 131 Y 131
           Y
Sbjct: 65  Y 65



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323

Query: 192 PSHN 195
           P HN
Sbjct: 324 PPHN 327


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 195/463 (42%), Gaps = 67/463 (14%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            N + VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L       K 
Sbjct: 700  NARDVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL---VRSLKV 755

Query: 76   ARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYR 130
            AR  G V     + HG+QS+  ++V LAQ +V     PL+   G FG     G   AA R
Sbjct: 756  ARFAGYVSEHAAYHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGR 815

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+GI  G AT+
Sbjct: 816  YISTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATN 874

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            IP+++  ++ +    L+   E+   K   +       TG I  E RE         +G F
Sbjct: 875  IPNYSPLDVIDNLNRLLSGEELQPMKPWYFGF-----TGTI--EERE---------KGKF 918

Query: 251  RVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
                   V   G     + +TE+P   +  Q  + +E + E  I   I   E   D +  
Sbjct: 919  VSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLREREIV--IQYREHNTDVTV- 971

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-----MNVLSM---GRVPQVMPLDG 359
            D  + + P+        ++        +E R  L       N+++    G++ + +  + 
Sbjct: 972  DFEVFIHPE--------VLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDAES 1023

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +LKE+   R E   RR  F ++ + R          A L ++ ++  + NE      +V+
Sbjct: 1024 VLKEFYLVRLEYYARRREFLLEQLQR----------AALKLENMVRFV-NEVIDGTFIVT 1072

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            R S+     D + +L+ R        Q K      + ++E  D
Sbjct: 1073 RRSMK----DVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEDND 1111


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           SE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +A PF  RYPL+ GQGN+G
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D 
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDD 60

Query: 124 -DSAAAYRYTE 133
             S AA RYTE
Sbjct: 61  PKSFAAMRYTE 71


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 92/148 (62%), Gaps = 4/148 (2%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME+ + + M  +   + P+V     +L  +L HR+ V+ RR+ + +Q 
Sbjct: 4   EIVLNNLFKSTTMESTWGVIMLAIH-NKEPKVFSFFELLNLFLNHRKTVIIRRTIYELQK 62

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NIDE+IA+I+N  D P  K +++ +F L+E Q +AIL+++L  L
Sbjct: 63  ARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDMKLGRL 122

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             LE  +I +EL  LLAE E++D +L S
Sbjct: 123 TGLEREKIDNELRELLAEIERLDQILKS 150


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           RG   +R    +E +      I++TEIPYQV K+ +IE
Sbjct: 60  RGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 53/70 (75%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA R
Sbjct: 3   SYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMR 62

Query: 131 YTEARMTQVA 140
           YTEAR++++A
Sbjct: 63  YTEARLSEIA 72


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 9   KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 66



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 487 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 546

Query: 192 PSHN 195
           P HN
Sbjct: 547 PPHN 550


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 52/70 (74%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA R
Sbjct: 3   GYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMR 62

Query: 131 YTEARMTQVA 140
           YTEAR++++A
Sbjct: 63  YTEARLSEIA 72


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 56/364 (15%)

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           K++  + ++RDES +D   V+    R   P++++ +++  + +++ F +N+  L  GR P
Sbjct: 2   KKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-P 60

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L+ ++ HRREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+    
Sbjct: 61  RILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPT 120

Query: 413 PKPV----------------MVSR---------------------FSLTENQVDAILNLR 435
           P                   MV R                     + L+  Q  AIL LR
Sbjct: 121 PAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELR 180

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  ++  E   +L +  ++  +LNS  +    I  E+  ++  +  +     R
Sbjct: 181 LHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----R 235

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   + +R D  TL   + E+E + V IS+ G+ ++         +      SA   K+
Sbjct: 236 RTEILD-ARLD-LTLGDLITEEERV-VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKD 292

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D +   L A++   +L+ S+ GK Y L    +   S    G  +  L+ L+  + I T 
Sbjct: 293 EDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTM 352

Query: 606 FVYD 609
              D
Sbjct: 353 LPVD 356


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 6   KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 63



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 49/67 (73%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  I++ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 484 TEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 543

Query: 192 PSHNVQE 198
           P HN  E
Sbjct: 544 PPHNKGE 550


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 43/58 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RY
Sbjct: 12  KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 69



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 491 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 550

Query: 192 PSHN 195
           P HN
Sbjct: 551 PPHN 554


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 165/368 (44%), Gaps = 53/368 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 788  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 842

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 843  GEELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDSE--V 881

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRSLDPDL-- 324
             +TE+P +       +K+ E+I A+++P  ++D +D +   +V  ++  + + +   L  
Sbjct: 882  EITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEE 941

Query: 325  -LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R  + +  
Sbjct: 942  GLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998

Query: 383  IDRRVEIL 390
            +  R++ L
Sbjct: 999  LQTRLDKL 1006


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 38/273 (13%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   ++ +       K A + G V+G   + HGD S+  +++
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKDM---KVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    D   +   
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLL--- 920

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI-CEAALALIDNPE 211
             TYN +D    EP  +    P +L NG  GI  G +TSIP++N +EI       ++  P 
Sbjct: 921  -TYNVDDGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPV 979

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + ++       G     GG          E Y+   G F         ++G     I +T
Sbjct: 980  VPMQPWFRGFTGEVVSMGG----------ERYKFS-GRF--------SQIGDNE--IEIT 1018

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            E+P +       +++ E+I A++IP  ++D +D
Sbjct: 1019 ELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKD 1051


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 52/70 (74%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA R
Sbjct: 3   GYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMR 62

Query: 131 YTEARMTQVA 140
           YTEAR++++A
Sbjct: 63  YTEARLSEMA 72


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 16/244 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR+ F +Q 
Sbjct: 7   EIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQK 65

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NID +I +I+   + +  +  ++++F L+E Q +AIL++RL  L
Sbjct: 66  ARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILDMRLSKL 125

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F        +    
Sbjct: 126 TGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKF--------KCPRI 177

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++         + +I  E + V I++RG+I+ + S S +      K G   K+A+  + 
Sbjct: 178 TDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQ----KRGGKGKVAVTTYD 233

Query: 560 TDRI 563
            D I
Sbjct: 234 DDFI 237


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 38/273 (13%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   ++ +       K A + G V+G   + HGD S+  +++
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKDM---KVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    D   +   
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLL--- 920

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI-CEAALALIDNPE 211
             TYN +D    EP  +    P +L NG  GI  G +TSIP++N +EI       ++  P 
Sbjct: 921  -TYNVDDGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPV 979

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + ++       G     GG          E Y+   G F         ++G     I +T
Sbjct: 980  VPMQPWFRGFTGEVVSMGG----------ERYKFS-GRF--------SQIGDNE--IEIT 1018

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            E+P +       +++ E+I A++IP  ++D +D
Sbjct: 1019 ELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKD 1051


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   DV  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 54/369 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++   ++ +       K A + G V+G   + HGD S+  +++
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKDM---KVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    D   +   
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLL--- 920

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI-CEAALALIDNPE 211
             TYN +D    EP  +    P +L NG  GI  G +TSIP++N +EI       ++  P 
Sbjct: 921  -TYNVDDGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGEPV 979

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
            + ++       G     GG          E Y+   G F         ++G     I +T
Sbjct: 980  VPMQPWFRGFTGEVVSMGG----------ERYKFS-GRF--------SQIGDNE--IEIT 1018

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESI 329
            E+P +       +++ E+I A++IP  ++D +D  +   V  V+      LD     ++I
Sbjct: 1019 ELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVI-----QLDEKHAKKTI 1073

Query: 330  FMLSDMETRFPLNMNVL--------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
                 +E +  L   +         S GR+ +    + IL+E+ + R ++  +R   ++ 
Sbjct: 1074 --AEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPEHILQEFYSVRIKLYEKRKQHQLS 1131

Query: 382  AIDRRVEIL 390
             + + +E L
Sbjct: 1132 QMQKDLEKL 1140


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   DV  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 16/244 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR+ F +Q 
Sbjct: 9   EIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQK 67

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
              R  IL+GL IA  NID +I +I+   + +  +  ++++F L+E Q +AIL++RL  L
Sbjct: 68  ARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILDMRLSKL 127

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F        +    
Sbjct: 128 TGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKF--------KCPRI 179

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            ++         + +I  E + V I++RG+I+ + S S +      K G   K+A+  + 
Sbjct: 180 TDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQ----KRGGKGKVAVTTYD 235

Query: 560 TDRI 563
            D I
Sbjct: 236 DDFI 239


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 729

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 730  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 789

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 790  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 844

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 845  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 884

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   DV  ++  + + 
Sbjct: 885  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 936

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 937  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 993

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 994  KQYLLSELQTQLDKL 1008


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 61/372 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR-------IVGEVIG-KLHPHGDQ 92
            R+IP + DG KP  R++++ M          FK++ R       + G V G   + HGD 
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTM----------FKRNVRRDIKVVELAGYVSGMTAYQHGDN 725

Query: 93   SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
            S++ ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    D
Sbjct: 726  SLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQAD 785

Query: 149  EDAVDFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            E  +      N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +   
Sbjct: 786  EPLL-----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLK 840

Query: 205  ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             L+   E+   K       P F   G   E   S          G R +    +++ G  
Sbjct: 841  RLMAGEELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDN 881

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRSLDP 322
               + +TE+P +       +K+ E+I A+++P  ++D +D +   +V  V+  + + +  
Sbjct: 882  E--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKK 939

Query: 323  DL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R  +
Sbjct: 940  ALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQY 996

Query: 379  RMQAIDRRVEIL 390
             +  +  +++ L
Sbjct: 997  LLSELQTQLDKL 1008


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 61/372 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR-------IVGEVIG-KLHPHGDQ 92
            R+IP + DG KP  R++++ M          FK++ R       + G V G   + HGD 
Sbjct: 677  RSIPSVVDGLKPGQRKVLYTM----------FKRNVRRDIKVVELAGYVSGMTAYQHGDN 726

Query: 93   SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
            S++ ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    D
Sbjct: 727  SLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQAD 786

Query: 149  EDAVDFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            E  +      N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +   
Sbjct: 787  EPLL-----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLK 841

Query: 205  ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             L+   E+   K       P F   G   E   S          G R +    +++ G  
Sbjct: 842  RLMAGEELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDN 882

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRSLDP 322
               + +TE+P +       +K+ E+I A+++P  ++D +D +   +V  V+  + + +  
Sbjct: 883  E--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKK 940

Query: 323  DL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R  +
Sbjct: 941  ALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQY 997

Query: 379  RMQAIDRRVEIL 390
             +  +  +++ L
Sbjct: 998  LLSELQTQLDKL 1009


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 19/182 (10%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI------VGEVIGKLHPHGDQS 93
           ER+IP L DG KP  R+++         F  A KK  ++      VGE+    + HG+ S
Sbjct: 211 ERSIPSLVDGLKPGQRKVLFTC------FKRADKKEVKVAQLAGAVGEMSA--YHHGEAS 262

Query: 94  VYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +  ++V LAQ FV      L+   G FG     G  +A+ RY   ++  V + +   +DE
Sbjct: 263 LMSTIVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSIDE 322

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + + F    N++  EP  +    P +L NGT GI    +T +P +N +EI +   ALID 
Sbjct: 323 NVLRFLYEENQK-IEPEWYCPVIPTVLVNGTEGIGTAWSTKVPCYNPREIVDNMRALIDG 381

Query: 210 PE 211
            E
Sbjct: 382 KE 383


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 39/259 (15%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+ + +ER IP L DG KPV R ++    +        F+K A I   V    + HG+ 
Sbjct: 21  YAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGSGVAELGYHHGET 80

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  ++   +A  +    PL+ GQGNFG+     A A RY  AR+ +    I +       
Sbjct: 81  NAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENFFKIYK------- 133

Query: 153 DFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ---EICEAALA- 205
           D       ED E   P  +    P +LANG SGIA G  T I  H+++   E  E ALA 
Sbjct: 134 DMNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLIECTELALAG 193

Query: 206 -LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L   P +   K    +I P     G+I+E       +Y L                  G
Sbjct: 194 KLDKEPSVQFPKFTGKVI-PRDDRDGVILEG------TYELN-----------------G 229

Query: 265 SWCIVVTEIPYQVQKSRLI 283
              + ++E+PY+  +   +
Sbjct: 230 KTTLTISEVPYKFDREEYV 248


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 185/421 (43%), Gaps = 44/421 (10%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ NV  +S    + +  + ++++    R+IP + DGFKP  R+++ A  +  L    
Sbjct: 765  THLDHNVSQISYTEFINKELILFSMAD-NIRSIPSMVDGFKPGQRKVLFACFKRKL---K 820

Query: 71   AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
            A  K A++ G       + HG+QS+  ++V LAQ FV      ++S  G FG     G  
Sbjct: 821  AEIKVAQLGGYCAEHSAYHHGEQSLTQTIVALAQNFVGSNNINVLSPNGQFGTRANGGKD 880

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGI 183
            AA+ RY    + ++   I    D+  +++    N++ +  EP  +    P +L NG+SGI
Sbjct: 881  AASARYIFTNIEKITRAIFPPQDDHVLNY---LNDDGAQIEPEWYVPVLPMVLVNGSSGI 937

Query: 184  AVGMATSIPSHNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
              G ++ IP++N  +I E     L D P   +E +  +  G    TG I  E+       
Sbjct: 938  GTGWSSDIPNYNPMDIVENLRRKLSDEP---LEPIYPWFRG---FTGHITPEA------- 984

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK-RIP-LLED 300
                 G F+V   W   +       + +TE+P +V      E +   I +  ++P L++D
Sbjct: 985  ----PGKFKVTGEWNQPDED----TVEITELPIRVWNLTYKELLEAWITSTDKVPALVKD 1036

Query: 301  IRDESAEDVR---IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMP 356
             R+   E      I L  K +       +E +F L+   +    NM    S G++ +   
Sbjct: 1037 YREYHTETTVHFIIQLTDKGKEAIKKDGLEKVFKLTGNVST--TNMVCFDSFGKIKKYST 1094

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
             + IL+++   R E   +R  F +Q +    E L       L I E   II N  K + V
Sbjct: 1095 PEEILEDFYDIRLEYYQKRKEFLVQDLTTTYERLSNQARFVLMIIEKKLIINNRKKAEVV 1154

Query: 417  M 417
            +
Sbjct: 1155 I 1155


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   DV  ++    + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMDEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 195/457 (42%), Gaps = 57/457 (12%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +AVS +  + +  + ++ +   ER+IP L DG KP  R+++         F  A
Sbjct: 735  LYDKDTRAVSFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTC------FKRA 787

Query: 72   FKKSARI------VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
             KK  ++      VGE+    + HG+ S+  ++V LAQ +V      L+   G FG    
Sbjct: 788  DKKEVKVAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQ 845

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++  V   +   VDE+ + F    N+   EP  +    P +L NG  
Sbjct: 846  GGKDSASPRYIFTQLNPVTRALFPAVDENVLRFLFEENQR-IEPEWYCPIIPTVLVNGAE 904

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI    +T IP++N +EI +    LI   E            P  P       + E + E
Sbjct: 905  GIGTAWSTKIPNYNPREIVDNMRRLIRGEEPK----------PLIPWFKNFRGTIEKLDE 954

Query: 242  SYRLGRGGFRVRARWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIA---KRIPL 297
            S  +           C  E+   G   I +TE+P +       E + E ++    K+ PL
Sbjct: 955  SRYI-----------CSGEIALLGDDTIEITELPIRTWTQNYKESVLESMLEGSDKQPPL 1003

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVM 355
            ++D ++   +     +   N +   +  ME +  +  ++T   ++  VL   +G + +  
Sbjct: 1004 IQDFKEYHTDTTVKFVVKMNPAKLREAKMEGLHKIFKLQTAINISSMVLFDPLGCLRRFS 1063

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             ++ I KE+   R++    R +F+   +  + E L     A   +++I   I  E+K K 
Sbjct: 1064 NVEEICKEFFEIRKKKYIERKAFQEGMLRAQSERLSNQ--ARFILEKIKGEILIENKRKA 1121

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            V+V +        D +        +K +E Q K EL+
Sbjct: 1122 VIVEQLVKKGFDPDPV--------KKWKELQRKRELE 1150


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P         +K+ E+I A+++P  ++D +D +   DV  ++  + + 
Sbjct: 883  --------ITELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+I
Sbjct: 486 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 545

Query: 192 PSHN 195
           P HN
Sbjct: 546 PPHN 549



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+      AA R
Sbjct: 5   SHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPPAAMR 64

Query: 131 Y 131
           Y
Sbjct: 65  Y 65


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 42/52 (80%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           GK HPH D +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 1   GKYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 50/77 (64%)

Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
          V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17 VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73 KKSARIVGEVIGKLHPH 89
           KSAR+VGEV+GKLHP 
Sbjct: 77 MKSARVVGEVMGKLHPQ 93


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 161/363 (44%), Gaps = 43/363 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 750  RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 807

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      ++   G+FG+    G   +A RY    ++++   I   +D+    +  
Sbjct: 808  LAQNFVGSNNINVLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQ 867

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T+IPS+N +++      L++  E+    
Sbjct: 868  D-DEQTVEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQ--- 923

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
                 + P +   G  +E          +G   F+V  R  +E++   S  + +TEIP +
Sbjct: 924  ----EMTPWYKGWGGDLEP---------MGPQKFKVSGR--IEQI--DSNTVEITEIPVK 966

Query: 277  VQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LMES 328
                     + E +++     K  P ++D+ +     +R V+   +  +   L   L+E 
Sbjct: 967  T----WTNNVKEFLLSGFGNEKTQPWIKDMEEHHTTSIRFVVKLTDAEMQKSLRIGLLER 1022

Query: 329  IFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              ++S +      NM     MGR+ +   +  I+K++   R E   +R  +    +  ++
Sbjct: 1023 FKLVSSLSL---ANMVAFDPMGRIKKYNDVLEIIKDFYYVRLEYYQKRKDYMTDNLQNQL 1079

Query: 388  EIL 390
             +L
Sbjct: 1080 LML 1082


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 161/363 (44%), Gaps = 43/363 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 750  RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 807

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      ++   G+FG+    G   +A RY    ++++   I   +D+    +  
Sbjct: 808  LAQNFVGSNNINVLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQ 867

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T+IPS+N +++      L++  E+    
Sbjct: 868  D-DEQTVEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVTNIRRLMNGEELQ--- 923

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
                 + P +   G  +E          +G   F+V  R  +E++   S  + +TEIP +
Sbjct: 924  ----EMTPWYKGWGGDLEP---------MGPQKFKVSGR--IEQI--DSNTVEITEIPVK 966

Query: 277  VQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LMES 328
                     + E +++     K  P ++D+ +     +R V+   +  +   L   L+E 
Sbjct: 967  T----WTNNVKEFLLSGFGNEKTQPWIKDMEEHHTTSIRFVIKLTDAEMQKSLRIGLLER 1022

Query: 329  IFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              ++S +      NM     MGR+ +   +  I+K++   R E   +R  +    +  ++
Sbjct: 1023 FKLVSSLSL---ANMVAFDPMGRIKKYNDVLEIIKDFYYVRLEYYQKRKDYMTDNLQNQL 1079

Query: 388  EIL 390
             +L
Sbjct: 1080 LML 1082


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 166/398 (41%), Gaps = 77/398 (19%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            R+IP + DG KP  R++++A  +  L      KK   + G V     + HG+ S+  +++
Sbjct: 816  RSIPSVIDGLKPGQRKVLYACFKRNL---TKDKKVVELAGYVSEHTAYHHGEASLQQTII 872

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      ++   GNFG+    G  AA+ RYT  R+   A+ I   +DE  +   
Sbjct: 873  GLAQDFVGSNNINVLEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPLDEACL--- 929

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE------AALAL 206
              +  ED    EP V+    P +L NG  GI  G +T+IP+++  +I +        L  
Sbjct: 930  -KHQYEDGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIVKNLKRRMGRLDE 988

Query: 207  IDNPEISIEKLLEYI---------IGPD-FPTGGIIVESRESIVESYRLGRGGFRVRARW 256
             D  E   E +  +           GPD +   GI  ++ ++  E               
Sbjct: 989  DDAEEKPFETMTPWFRGWKGNPEAAGPDRYKFNGIASQNDQNPNE--------------- 1033

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRD-ESAEDVRIVLF 314
                       I++TE+P ++       K+ ++I     P  ++D ++    + V   + 
Sbjct: 1034 -----------IIITELPIRMWTDDFKAKLEKVISGSDGPTWIKDYKEFNDHKTVHFEIM 1082

Query: 315  PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLA 366
               + L P +L E +        RF L   + +         G++ +   ++ IL+E+  
Sbjct: 1083 VDEKHL-PKILEEGLL------ERFKLTKQIATSNLVAFDTRGQIRKYEKVEDILEEYYV 1135

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            HR ++   R  + +Q  D  +E LK     Y  I EII
Sbjct: 1136 HRLQMYHARKQYWLQVYDNDLEKLKN---QYRFIKEII 1170


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 16/239 (6%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           ++F  + ME  F + M  ++  + P+V  L  +LK +L HR+ V+ RR+ F +Q    R 
Sbjct: 2   NLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQKARARA 60

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL IA  NID +I +I+   + +  +  ++++F L+E Q +AIL++RL  L  LE 
Sbjct: 61  HILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILDMRLSKLTGLER 120

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++++EL  +L   EK+D++L S     N I  E+ E+K  F        +     ++  
Sbjct: 121 EKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKF--------KCPRITDIVD 172

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                  + +I  E + V I++RG+I+ + S S +      K G   K+A+  +  D I
Sbjct: 173 DYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQ----KRGGKGKVAVTTYDDDFI 227


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 57/388 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
            R+IP + DG KP  R++++A  +  L      KK   + G V     + HG+ S+  +++
Sbjct: 807  RSIPSVIDGLKPGQRKVLYACFKRNL---IKDKKVVELAGYVSEHTAYHHGEASLQQTII 863

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      ++   GNFG+    G  AA+ RYT  R+   A+ I   +DE  +   
Sbjct: 864  GLAQNFVGSNNINILEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPLDEACL--- 920

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              +  ED    EP V+    P +L NG  GI  G +T+IP+++  +I       + N + 
Sbjct: 921  -KHQYEDGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADI-------VKNLKR 972

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF------RVRARWCVEEVGRGSW 266
             + +L E          G   +  E++   +R  +G        R +      +  +   
Sbjct: 973  RMGRLDE---------DGAEEKPFETMTPWFRGWKGSPEAAGPDRYKFNGIASQNDQNPN 1023

Query: 267  CIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRD-ESAEDVRIVLFPKNRSLDPDL 324
             I++TE+P ++       K+ ++I     P  ++D ++    + V   +    + L P +
Sbjct: 1024 EIIITELPIRMWTDDFKAKLEKVISGNDGPTWIKDYKEFNDHKTVHFEIMVDEKHL-PKI 1082

Query: 325  LMESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRS 376
            L E +        RF L   V +         G++ +   ++ IL+E+  HR ++   R 
Sbjct: 1083 LEEGLL------ERFKLTKQVATSNLVAFDTRGQIRKYEKVEDILEEYYVHRLQMYHDRK 1136

Query: 377  SFRMQAIDRRVEILKGLLIAYLNIDEII 404
             + +Q  D  +E LK     Y  I EII
Sbjct: 1137 QYWLQVYDNDLEKLKN---QYRFIKEII 1161


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 39/259 (15%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+ + +ER IP L DG KPV R ++    +        F+K A I   V    + HG+ 
Sbjct: 27  YAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGSGVAELGYHHGET 86

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  ++   +A  +    PL+ GQGNFG+     A A RY  AR+ +    I +       
Sbjct: 87  NAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENFFKIYK------- 139

Query: 153 DFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ---EICEAALA- 205
           D       ED E   P  +    P +LANG SGIA G  T I  H+++   E  E ALA 
Sbjct: 140 DMNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLIECTELALAG 199

Query: 206 -LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L   P +   K    +I P     G+I+E       +Y L                  G
Sbjct: 200 KLDKEPSVQFPKFTGKVI-PRDDRDGVILEG------TYELN-----------------G 235

Query: 265 SWCIVVTEIPYQVQKSRLI 283
              + ++E+PY+  +   +
Sbjct: 236 KTKLTISEVPYKFDREEYV 254


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 109/259 (42%), Gaps = 39/259 (15%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+ + +ER IP L DG KPV R ++    +        F+K A I   V    + HG+ 
Sbjct: 27  YAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGSGVAELGYHHGET 86

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +  ++   +A  +    PL+ GQGNFG+     A A RY  AR+ +    I +       
Sbjct: 87  NAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENFFKIYK------- 139

Query: 153 DFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ---EICEAALA- 205
           D       ED E   P  +    P +LANG SGIA G  T I  H+++   E  E ALA 
Sbjct: 140 DMNCAPKHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLIECTELALAG 199

Query: 206 -LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            L   P +   K    +I P     G+I+E       +Y L                  G
Sbjct: 200 KLDKEPSVQFPKFTGKVI-PRDDRDGVILEG------TYELN-----------------G 235

Query: 265 SWCIVVTEIPYQVQKSRLI 283
              + ++E+PY+  +   +
Sbjct: 236 KTKLTISEVPYKFDREEYV 254


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDG +AAA RYTE RM +
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIV+  K R  +P +++  +F  + ++  F + M  L +   P+++ L  IL  +L H+
Sbjct: 13  MRIVIELK-RDANPQVVLNQLFKHTQLQDTFGIIMLAL-VDNQPRILNLKEILFYYLEHQ 70

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           ++V+ RR+ + +   + R  IL+GL IA  N+DE+I IIR     D  +  ++SRF LTE
Sbjct: 71  KDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTE 130

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            Q  AIL++RL+ L  LE  +I  E   L+
Sbjct: 131 KQAQAILDMRLQRLTALEREKIDEEYRELI 160


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 272 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 329

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 330 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 389

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
             +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 390 E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 446

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 447 MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 488

Query: 277 VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
              S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 489 TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 543

Query: 333 SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
              +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 544 ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 603


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G  D   S AA
Sbjct: 3   AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAA 62

Query: 129 YR 130
            R
Sbjct: 63  MR 64


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 160/358 (44%), Gaps = 36/358 (10%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP L DG KP  R+I+ A  +  L       + +  V E     + HG+QS+  ++V+
Sbjct: 807  RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLSGYVAEQTS--YHHGEQSLNSTIVK 864

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +A  FV     PL++  G FG     G  +A+ RY   ++  V  L    +D+  ++   
Sbjct: 865  MAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYI-LQLEPVGTLPFNELDDPLLN--- 920

Query: 157  TYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
             Y EE+ E   P  +    P LL NG+ GI VGM+TSIP  +  +I +  +  ++N +++
Sbjct: 921  -YLEEEGESIQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQLMLRLNN-QVA 978

Query: 214  IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++KL+ +  G      G I   R +              R    ++ VGR    + +TE+
Sbjct: 979  LKKLIPWYRG----FKGTISPDRHT-------------YRTNGVIKLVGRN---LEITEL 1018

Query: 274  PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
            P     S   E + +LI    I   ++   E++    I+L         DL    +  L 
Sbjct: 1019 PIGRWTSDYKEVLNDLIDKDVIKSFQESNTENSVHFTILLNNNQLEQMEDLTENELIKLF 1078

Query: 334  DMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +      ++       ++ ++  ++ I+ ++   R +   +R  + ++++D +++ L
Sbjct: 1079 KLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRLQFYGKRREYLLKSLDNQIKRL 1136


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++AM      F    KK  ++V   G V G   + HG+ S+  
Sbjct: 727 RSIPSVVDGLKPGQRKVLYAM------FKRNVKKDMKVVELGGYVSGMTAYQHGEASLQQ 780

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 781 TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLL 840

Query: 153 DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 N +D    EP V+    P +L NG  GI  G +TSIP+ N ++I      L+D 
Sbjct: 841 ----KSNIDDGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDIVANLRRLMDG 896

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
              S+  +  +  G  F TG +                 G R +    +++ G    C V
Sbjct: 897 E--SLVPMKPWFRG--F-TGEVTA--------------SGDRYKFSGIIKQTGD---CEV 934

Query: 270 -VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            +TE+P +       +K+ E+I A++ P  ++D +D
Sbjct: 935 EITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 970


>gi|23011688|ref|ZP_00051975.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 79

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           M+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK++  + TT +ILLL+++GK +
Sbjct: 1   MVEREPITVILSEKGWIRALKGHVTDLSGVSFKGDDTLKVSFLSETTAKILLLASNGKVF 60

Query: 574 TLPAGNLLSGRGHGEAIQ 591
           TL A   L GR     I+
Sbjct: 61  TLEASK-LPGRAPASVIR 77


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 161/363 (44%), Gaps = 43/363 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 750  RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 807

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ F+      ++   G+FG+    G   +A RY    ++++   I   +D+    +  
Sbjct: 808  LAQNFIGSNNINVLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLYTYVQ 867

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T+IPS+N +++      L++  E+    
Sbjct: 868  D-DEQTVEPEWYLPVLPMILVNGAEGIGTGWSTNIPSYNPKDLVANIRRLMNGEELQ--- 923

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
                 + P +   G  +E          +G   F+V  R  +E++   S  + +TEIP +
Sbjct: 924  ----EMTPWYKGWGGDLEP---------MGPQKFKVSGR--IEQI--DSNTVEITEIPVK 966

Query: 277  VQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LMES 328
                     + E +++     K  P ++D+ +     +R V+   +  +   L   L+E 
Sbjct: 967  T----WTNNVKEFLLSGFGNEKTQPWIKDMEEHHTTSIRFVVKLTDAEMQKSLRIGLLER 1022

Query: 329  IFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              ++S +      NM     MGR+ +   +  I+K++   R E   +R  +    +  ++
Sbjct: 1023 FKLVSSLSL---ANMVAFDPMGRIKKYNDVLEIIKDFYYVRLEYYQKRKDYMTDNLQNQL 1079

Query: 388  EIL 390
             +L
Sbjct: 1080 LML 1082


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEMAGYLLQDI 72


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 22/211 (10%)

Query: 12  LVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           L ++N   VS + F  +E  L   L+   ER+IP L DG KP  R+++         F  
Sbjct: 710 LYDKNTYVVSFKDFVNKE--LVLFLNCDNERSIPSLVDGLKPGQRKVLFTC------FKR 761

Query: 71  AFKKSARI------VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN-- 120
           A KK  ++      VGE+    + HG+ S+  ++V LAQ FV      L+   G FG   
Sbjct: 762 ADKKEVKVAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDFVGSNNINLLLPIGQFGTRL 819

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   ++  V + +   +DE+ + F    N++  EP  +    P +L NG 
Sbjct: 820 QGGKDSASPRYIFTQLNPVTKALFPSIDENVLRFLFEENQK-IEPEWYCPVIPTVLVNGA 878

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            GI    +T +P +N +EI +   ALID  E
Sbjct: 879 EGIGTAWSTKVPCYNPREIVDNMRALIDGKE 909


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 179/409 (43%), Gaps = 62/409 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++ R L +  +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRYKDFID-RELIHFSNADNLRSIPSLCDGLKPGQRKILFSCFKRNL- 706

Query: 68   FGAAFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG- 119
                  KS   V ++IG +     + HG+QS+  +++ +AQ FV      L+   G FG 
Sbjct: 707  ------KSEIKVAQLIGYVAEHSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGT 760

Query: 120  -NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF----PN 174
             N  G   A+ RY    ++++  ++    D+  + +      ED   VV P  +    P 
Sbjct: 761  RNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKYL-----EDDNQVVEPEWYMPIIPM 815

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
             L NG+SGI  G +T IP++N +EI E     ++    +  +L  +  G     G I + 
Sbjct: 816  CLVNGSSGIGTGWSTDIPNYNHKEIVEQIRGKLEGKPFT--ELHPWYKG---FQGQIEIN 870

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AK 293
                        +GG+ V+ ++ ++EV      I +TE+P           + EL+   K
Sbjct: 871  P-----------KGGYIVKGQYEIDEVEE---TIKITELPVGKWTRDYKNYLEELLSPPK 916

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG---- 349
              P +EDIR E   + R+         +   +   I    D+E +  L+  + +      
Sbjct: 917  GEPEIEDIR-EYHTNNRV-------HFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVMF 968

Query: 350  ----RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
                ++ +      I++E+ A R +   +R  + +  I R V+IL+  +
Sbjct: 969  NDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKM 1017


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 282 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 339

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 340 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 399

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
             +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 400 E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 456

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 457 MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 498

Query: 277 VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
              S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 499 TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 553

Query: 333 SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
              +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 554 ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 613


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 189/391 (48%), Gaps = 30/391 (7%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ +RS + ++    
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIITKRSEYDIRKARA 59

Query: 386 RVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+ A   +DE+I +IR ++DK   K  + +++  +E Q +AI++L+L  L   
Sbjct: 60  RQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNT 119

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + ++++SE  +L  +   ++ +L    +    +  E+ E+K    K     RR     E+
Sbjct: 120 DIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIK----KKYKTARRTEVQAEI 175

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKEGDSLKIALHAHT 559
           +     T  + ++  E + V ++  G+++  S +S++    A L  KE D        ++
Sbjct: 176 TEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNS 233

Query: 560 TDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF---VYDSTCK 613
            D +LL ++ G     P   L  +  +  G+ +  L  DL+  ++I +A     +    +
Sbjct: 234 LDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR 293

Query: 614 LLVVSSKGNAFIVEESEIIANTR-----KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
            L V+  G    + +   I N +     K    +K+  ++++  V  + G + + +  +N
Sbjct: 294 FLFVTKNG----MTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKN 349

Query: 668 RKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
              L +SI +IPE  +R  GV+  + K   I
Sbjct: 350 GYGLRYSITEIPESGARTAGVKAINLKQDDI 380


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
          Length = 1677

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 22/227 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T ++ + K++S    +    + ++++    R+IP + DGFKP  R++++A  +  L    
Sbjct: 772 TYLDHSTKSISYSDFINRELILFSMAD-NMRSIPSVLDGFKPGQRKVLYACFKRNL---V 827

Query: 71  AFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
             KK   + G V  +  + HG+ S+  +++ LAQ FV       +   GNFG+    G  
Sbjct: 828 KDKKVVELSGYVSEQTAYHHGEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGSD 887

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSG 182
           AA+ RYT  R++  A  I   +DE  +     +  ED    EPV +    P +L NG  G
Sbjct: 888 AASPRYTFTRLSPFARKIFSPMDEPNL----QHQHEDGKKIEPVAYAPIIPMVLVNGADG 943

Query: 183 IAVGMATSIPSHNVQEICE------AALALIDNPEISIEKLLEYIIG 223
           I  G +TSIP+++ ++I          L   D  E+  E ++ +  G
Sbjct: 944 IGTGWSTSIPNYHPEDIVRNLKRRMGRLDEKDGEELPFETMMPWFRG 990


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 164/391 (41%), Gaps = 62/391 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDS 97
            ER+IP++ DG+KP  R++++   +  L       K A++VG +      H HG+ S+  +
Sbjct: 736  ERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC---KVAQLVGYIAEHSAYHHHGESSLQQT 792

Query: 98   LVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
            ++ +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + 
Sbjct: 793  IINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILK 852

Query: 154  FRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            +    NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       IDN +
Sbjct: 853  Y---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDI-------IDNIK 902

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWC 267
              I K       P  P           +V  Y+  +G      +   E +G      +  
Sbjct: 903  RYINK------EPLIP-----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDT 945

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL- 325
            + +TE+P +       E + EL+  ++  L+ D  D S+ ED+   +      +DP  L 
Sbjct: 946  LEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTI-----KMDPAKLQ 1000

Query: 326  ------MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                  +E +F L    T   + +   ++        LD ILKE+   R +    R S+ 
Sbjct: 1001 KAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELD-ILKEFCYQRLKAYENRKSYL 1059

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            +  +++   I+            I+AI+ NE
Sbjct: 1060 ISKLEKEKRIISN------KTKFILAIVNNE 1084


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 44/388 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
            R+IP + DGFKP  R+++    +  L    A  K A++ G V     + HG+ S+   +V
Sbjct: 761  RSIPSVMDGFKPSQRKVLFCCFKRNL---RAELKVAQLAGYVSEHSAYHHGEASLQGCIV 817

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ FV      L+S  G FG   + G  AA+ RY    + Q+  LI   +D D +   
Sbjct: 818  NMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCL--- 874

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y  ED    EP  +    P +L NG+ GI  G ++S+P++N  +I +    +I+  EI
Sbjct: 875  -KYLSEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEEI 933

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            +   L  +  G  F TG I+ ++     ++     G + V+  + V +       +VV+E
Sbjct: 934  A--PLTPWYRG--F-TGHIVEKANSRGTDT-----GNYIVQGLYEVTDDS----TLVVSE 979

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
            +P +       + +  L+ A  I   +D + E+  DV+++      +++P  L +     
Sbjct: 980  LPVKSWTQTYKQFLEGLLDAGTI---KDFK-ENHTDVKVLF---TITMEPKALSDVTKAP 1032

Query: 333  SDMETRFPL-------NMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
              +  +F L       NM++  + G + +      I+ E+   R E   RR    +Q + 
Sbjct: 1033 GGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKLQ 1092

Query: 385  RRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             ++++L       L + E   ++ N  K
Sbjct: 1093 DQIKLLSNKARFVLAVVEGKLVVNNRKK 1120


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYP 60

Query: 111 LI 112
            I
Sbjct: 61  SI 62


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++AM      F    KK  ++V   G V G   + HG+ S+  
Sbjct: 810  RSIPSVVDGLKPGQRKVLYAM------FKRNVKKDMKVVELGGYVSGMTAYQHGEASLQQ 863

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 864  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLL 923

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                  N +D    EP V+    P +L NG  GI  G +TSIP+ N +++      L+D 
Sbjct: 924  ----KSNIDDGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDG 979

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
               S+  +  +  G  F TG +                 G R +    +++ G    C V
Sbjct: 980  E--SLVPMKPWFRG--F-TGEVTA--------------SGDRYKFSGIIKQTGD---CEV 1017

Query: 270  -VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
             +TE+P +       +K+ E+I A++ P  ++D +D
Sbjct: 1018 EITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 1053


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++AM      F    KK  ++V   G V G   + HG+ S+  
Sbjct: 810  RSIPSVVDGLKPGQRKVLYAM------FKRNVKKDMKVVELGGYVSGMTAYQHGEASLQQ 863

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    DE  +
Sbjct: 864  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLL 923

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                  N +D    EP V+    P +L NG  GI  G +TSIP+ N +++      L+D 
Sbjct: 924  ----KSNIDDGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDG 979

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
               S+  +  +  G  F TG +                 G R +    +++ G    C V
Sbjct: 980  E--SLVPMKPWFRG--F-TGEVTA--------------SGDRYKFSGIIKQTGD---CEV 1017

Query: 270  -VTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
             +TE+P +       +K+ E+I A++ P  ++D +D
Sbjct: 1018 EITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 1053


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 126/286 (44%), Gaps = 50/286 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  +++   G V G   + HG+ S+  
Sbjct: 823  RSIPSVIDGLKPGQRKVMYTC------FRRNIKKDVKVIDLAGSVSGTTDYAHGESSMQG 876

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I    D+  +
Sbjct: 877  TIVGLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFHAHDDALL 936

Query: 153  DFRDTYNEEDSEPV---VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 Y E D +P+   ++    P +L NG+SGI  G ++ IP+ N  EI       IDN
Sbjct: 937  ----KYGESDGKPIEPEMYIPVLPTILINGSSGIGTGWSSEIPNFNPMEI-------IDN 985

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR--LGR----GGFRVRARWCVEEVGR 263
              I +++             G   E    +V  Y+   GR    G  R +    + + G 
Sbjct: 986  IRIRMKE-------------GATKEDMRPMVPWYKGFTGRTEELGENRYQFTGTIRQTGD 1032

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAED 308
                + VTE+P +       EK+ E+I A + P  ++D  D +  D
Sbjct: 1033 NE--VEVTELPVRYWTQDFKEKLEEIIKADKTPSFIKDYIDYNTPD 1076


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHA 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 786 -----VNNIDDGKVIEPETYVPVVPLVLINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 840

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 841 GDELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 879

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            +TE+P +       +K+ ++I A+++P  ++D RD
Sbjct: 880 EITELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYRD 915


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 133/265 (50%), Gaps = 17/265 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLT 424
           R+ V+  R  F +    +R  I+ GL+ A   +D++IA IR ++DK   K  +VS ++ T
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFT 60

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AI+ L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+
Sbjct: 61  EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKK 120

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-S 541
            +      G  R T  E    +       ++ +E + V +++ G+I+  S++S++     
Sbjct: 121 QY------GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPE 174

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNH 598
            +  KEGD L  A   +T D +LL++  G     P   L  L  +  GE I Q +++L  
Sbjct: 175 EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAI 234

Query: 599 NQDIVTAFVYD--STCKLLVVSSKG 621
           ++ I+  + Y   S  K  V  +K 
Sbjct: 235 DESIIAVYPYKELSPTKTFVFITKA 259


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMV 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   +V  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 26/272 (9%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R++I+   +  L       + A  + EV    + HG+ S+  ++V 
Sbjct: 798  RSIPSMVDGLKPGQRKVIYGAFKRNLVNDQKVAELAGYISEVAA--YHHGEVSLQQTIVG 855

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ +V       +   GNFG+    G  AA+ RY   R++  A  I   +DE  ++++ 
Sbjct: 856  LAQTYVGSNNVNCLEPSGNFGSRLSGGSDAASARYIHTRLSPFARRIFSKLDEPNLEYQ- 914

Query: 157  TYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA---ALALIDNPEI 212
             +++ +  EP V+    P +L NG  GI  G +TSIP+++  EI +     +  +D PE 
Sbjct: 915  -FDDGNMIEPKVYVPILPMVLVNGADGIGTGWSTSIPNYHPIEIVDNLKRRMGRLD-PED 972

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            S EK  + +  P F     ++ES            G  R +    +++  +    I VTE
Sbjct: 973  SEEKAFKPMT-PWFRGWKGVLES-----------DGPNRYKFNGIIQQDEQNPNEIHVTE 1020

Query: 273  IPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            +P ++       K+ +++ A++ P  ++D R+
Sbjct: 1021 LPIRMWTDDFKSKLEDILRAEKTPSFIKDYRE 1052


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 858

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 859  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 918

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 919  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 973

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 974  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 1013

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D  +  DV  ++  + + 
Sbjct: 1014 --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 1065

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 1066 MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 1122

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 1123 KQYLLSELQTQLDKL 1137


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMV 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   +V  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 180/426 (42%), Gaps = 63/426 (14%)

Query: 11   TLVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T V+ N  ++S   F  +E  L     T  ER+IP L DG+KP  R+++ A  +  +   
Sbjct: 737  TFVDHNASSLSYADFVNKELILFSRYDT--ERSIPQLVDGWKPGQRKVLFACIKKNMKHE 794

Query: 70   AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGNID--GDS 125
                + A  V EV    + HG+ S+  ++V +AQ FV    L  +   G FG+    G  
Sbjct: 795  IKVAQLAGYVAEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKD 852

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGIA 184
            A+A RY   R+     L+    D+  +++   Y E +  EP ++    P +L NG+ GI 
Sbjct: 853  ASAARYIFTRLAFYTRLVFHEADDPILEYE--YEEGQRIEPKMYVPVIPTVLINGSEGIG 910

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++              IE L  YI G          E  + +   YR
Sbjct: 911  TGWSSFVPNYNPRDV--------------IENLRRYIDG----------EEMQRMTPWYR 946

Query: 245  LGRG---------GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAK 293
              RG         GF       VE+ G G++ I  TE+P +       E + E +    K
Sbjct: 947  GFRGKIEENSAGTGFETSG--LVEKCGEGAFEI--TELPIKKWTQDYKEWLEENLPTAEK 1002

Query: 294  RIPLLEDIRDESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-- 348
            R  L+ D RD S+ +     + +  +         +E  F L     +  L+   L++  
Sbjct: 1003 RDTLIADYRDCSSHEEIHFTVKVSEERLERPEREGLEKYFKL-----KTSLSTTNLTLFD 1057

Query: 349  --GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
              GRV +      I+KE+   R +   RR ++ +  +++   IL   L   L +     I
Sbjct: 1058 PHGRVQRYANELEIIKEFAPIRLDFYHRRKAYCLAMLEKSRRILSNRLRFILAVVNGQLI 1117

Query: 407  IRNEDK 412
            I N+ K
Sbjct: 1118 INNKRK 1123


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 167/362 (46%), Gaps = 44/362 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R+I++   +  L       + A  +GE     + HGDQS+  S++ 
Sbjct: 755  RSIPSMLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYIGE--HSAYHHGDQSLIQSIIG 812

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG+    G  A+A RY    ++++   I    D   +++  
Sbjct: 813  LAQDFVGSNNLNLLQPIGGFGSRAQGGKDASAARYIFTDLSKITRKIFHVDDNPLLNYLQ 872

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P LL NG+ GI  G +T+IP  N  +I      L+D  E  +E+
Sbjct: 873  D-DEQTVEPEWYLPIVPMLLINGSEGIGTGWSTNIPPFNPVDIVANIRRLMDGQE--MEE 929

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            ++ +  G +   G I            ++    FR+     +E++   +  I +TEIP +
Sbjct: 930  MIPWYRGWN---GSIT-----------KISADKFRMEGN--IEQIDDET--IEITEIPAK 971

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                 + E +   I    K+   ++D+ ++   D++ V+     +L  + + +S+ M   
Sbjct: 972  TWTINMKEFLLNGIAGSEKQKSWIKDMEEQHGMDLKFVI-----TLTKEEMKKSLQM--G 1024

Query: 335  METRFPL--NMNVLSM------GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++ RF L   +NV +M      G++ +   ++ I++++   R +   RR     + +  +
Sbjct: 1025 LKERFKLITTINVGNMVAFDAAGKIKKYDNVNEIIEDYYHVRLDFYQRRKDHLAEVLGNQ 1084

Query: 387  VE 388
            +E
Sbjct: 1085 LE 1086


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           R+IP + DG KP  R++++A     +      K   R+ GEV  +   H HG++S+ +++
Sbjct: 666 RSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRLTGEVASVAGYH-HGEKSLTETI 724

Query: 99  VRLAQPFV---QRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           + +AQ FV       L++  G+FG     G   +A RY  + + ++A ++    D+D  +
Sbjct: 725 IGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYLSSFVEKIARVVFPPEDDDLYE 784

Query: 154 --FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             F D    E +EP+ +    P ++ NG  GI  G +T IP HN  E+C      ++  E
Sbjct: 785 KVFEDN---EYNEPINYIPIIPLIVVNGACGIGTGHSTEIPPHNPLEVCHWIRCWLEEQE 841


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 52/72 (72%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMV 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVSGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   +V  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 53/308 (17%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++++ K+++    + +  + ++++    R+IP + DG KP  R++I+   +  +    
Sbjct: 803  TFLDQSTKSITYSDFVNKELILFSMAD-NMRSIPSVVDGLKPGQRKVIYTCLKKNI---V 858

Query: 71   AFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGD 124
              +K   + G V  +   H HGD S++ ++V LAQ FV       +   GNFG+    G 
Sbjct: 859  KDQKVFELAGSVSKLAAYH-HGDASLHQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGS 917

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF----PNLLANGT 180
             AA+ RY   R++  A  +   +DE  ++     N  D   V+ P  +    P +L NG 
Sbjct: 918  DAASARYIFTRLSPFARRVFNPLDEPVLE-----NNIDEGSVIEPKNYAPIVPMVLINGA 972

Query: 181  SGIAVGMATSIPSHNVQEICE------AALALIDNPEISIEKLLEYIIG------PDFPT 228
             GI  G +TSIP++N  ++          LA  +N E+  E ++ +  G      PD   
Sbjct: 973  DGIGTGWSTSIPNYNPVDVVNNLKRRMGRLAGHENEELPFESMIPWFRGWKGTPEPDSVP 1032

Query: 229  GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
            G                     R R    + +  R    IVV+E+P ++       K+ E
Sbjct: 1033 G---------------------RYRFNGIIYQDDRNPNEIVVSELPVRMWTDDFKAKLEE 1071

Query: 289  LIIAKRIP 296
            +I A++ P
Sbjct: 1072 VIRAEKSP 1079


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 61/372 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR-------IVGEVIG-KLHPHGDQ 92
            R+IP + DG KP  R++++ M          FK++ R       + G V G   + HGD 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTM----------FKRNVRRDIKVVELAGYVSGMTAYQHGDN 854

Query: 93   SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
            S++ ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    D
Sbjct: 855  SLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQAD 914

Query: 149  EDAVDFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
            E  +      N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +   
Sbjct: 915  EPLL-----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLK 969

Query: 205  ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             L+   E+   K       P F   G   E   S          G R +    +++ G  
Sbjct: 970  RLMAGEELVPMK-------PWF--RGFKGEVTGS----------GDRYKFSGIIKQTGDN 1010

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDP 322
               + +TE+P +       +K+ E+I A+++P  ++D +D  +  +V  V+  + + +  
Sbjct: 1011 E--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKK 1068

Query: 323  DL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R  +
Sbjct: 1069 ALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQY 1125

Query: 379  RMQAIDRRVEIL 390
             +  +  +++ L
Sbjct: 1126 LLSELQTQLDKL 1137


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 183/418 (43%), Gaps = 56/418 (13%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K ++    + +  + ++++    R+IP + DG KP  R++I A  +  L    
Sbjct: 784  TFLDHSTKQITYSDFVNKELILFSMAD-NMRSIPSMIDGLKPGQRKVIFACFKQNL---V 839

Query: 71   AFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
              KK   + G V  K  + HG+ S+  +++ LAQ +V       +   GNFG+    G  
Sbjct: 840  KDKKVVELAGYVSEKAAYHHGEASLQQTIIGLAQNYVGSNNVNCLEPSGNFGSRLQGGSD 899

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY   R++  A  +   +DE  +  +   + +  EP V+    P +L NG  GI  
Sbjct: 900  AASARYIHTRLSPFARRVFNPLDEPVLQHQ-VDDGKAIEPKVYAPVIPMVLVNGADGIGT 958

Query: 186  GMATSIPSHNVQEIC---EAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            G +TSIP+++ +EI    +  +  +D P E   E +  +  G             +   E
Sbjct: 959  GWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQEFEPMTPWWRG------------WKGTPE 1006

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                 R  F+      +++       +V+TE+P ++       ++ E+I A++ P  ++D
Sbjct: 1007 PEDASRIRFKFNGIANLDDKNPNE--VVITELPIRMWTDDFKARLEEIIRAEKTPSWIKD 1064

Query: 301  IRD-ESAEDVRIVLFPKNRSL-----DPDLLMESIFMLSDMETRFPLNMNVL-------- 346
             ++    ++V  ++    + +      P+LL+E          RF L  NV         
Sbjct: 1065 YKEFNDHKNVHFIIQLDEKHMKEFRDSPNLLLE----------RFKLQKNVAITNLVAFD 1114

Query: 347  SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            + G++ +   ++ IL+E+  +R  V   R +  ++  D      + L   Y  I EII
Sbjct: 1115 TNGQIRKYDKVEDILEEFYHYRLNVYAARKAHWLRVFDAD---YRKLTNQYRFISEII 1169


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 727

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 728  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLL 787

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 788  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMV 842

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 843  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 882

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRS 319
                    +TE+P +       +K+ E+I A+++P  ++D +D +   +V  ++  + + 
Sbjct: 883  --------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKH 934

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 935  MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 991

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 992  KQYLLSELQTQLDKL 1006


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|69250182|ref|ZP_00605118.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
 gi|68193990|gb|EAN08550.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
          Length = 251

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +LK H +D   L++K GDS K A+   +   ++ + + G++Y +    L S RG GE + 
Sbjct: 11  ALKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 70

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM- 650
             + L     +    +     KLL+ S  G  F+   ++++A  R GK  + +     + 
Sbjct: 71  GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVM 130

Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
             +V++   D +  + +  ++L+F +  +P++S+GKG ++
Sbjct: 131 PPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 170


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYP 60

Query: 111 LI 112
            I
Sbjct: 61  SI 62


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 4   AKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 63

Query: 129 YR 130
            R
Sbjct: 64  MR 65


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    KK  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVKKDIKVVELAGYVSGMTAYQHGDNSLHT 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 786 -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 840

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 841 GDELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 879

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            ++E+P +       +K+ E+I A+++P  ++D +D
Sbjct: 880 EISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKD 915


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 44/61 (72%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD+S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 51/72 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEIAGYLLQDI 72


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    KK  ++V   G V G   + HGD S++ 
Sbjct: 675 RSIPSVVDGLKPGQRKVLYTM------FKRNVKKDIKVVELAGYVSGMTAYQHGDNSLHT 728

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDE--- 149
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE   
Sbjct: 729 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 788

Query: 150 -DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            + VD       E   PVV     P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 789 ANNVDDGKVIEPETYVPVV-----PLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 843

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 844 GDELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 882

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            ++E+P +       +K+ E+I A+++P  ++D +D
Sbjct: 883 EISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKD 918


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 51/69 (73%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KK
Sbjct: 7  QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66

Query: 75 SARIVGEVI 83
          SARIVGEVI
Sbjct: 67 SARIVGEVI 75


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 158/366 (43%), Gaps = 45/366 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            RAIP + DG KP  R++++A  + GL       + A  V E     + HG++S++ ++V 
Sbjct: 1029 RAIPSVVDGLKPGQRKVLYASFKRGLTQEMKVAQLAGYVAEHTA--YHHGEESLHGTIVN 1086

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +AQ FV     PL+   G FG     G  AA+ RY   ++  +   I   +D+  +++ +
Sbjct: 1087 MAQDFVGANNLPLLLPSGQFGTRLQGGKDAASARYIFTKLAPLTRTIFPDLDDPVLNYLE 1146

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              + +  +P  F    P +L NG+ G+ +G  TSIP +N   + +  L L+ N       
Sbjct: 1147 G-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYNPTNLIDNLLRLLHN------- 1198

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG-----RGSWCIVVT 271
                             E  E +   Y+  +G   +   +  +  G     +      ++
Sbjct: 1199 -----------------EPMEPLTPWYKGFKGSVELTPPFTFKTYGVIEPTKKEHIFKIS 1241

Query: 272  EIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRI---VLFPKNRSLDP-DLLM 326
            E+P +   +   E +   +  ++  P L+D   E   D ++   V FP+     P     
Sbjct: 1242 ELPVRKWTNDYKELLTTYVKPEKGKPTLKDF-SEYNTDQKVDFEVTFPRGAEAKPIPQNA 1300

Query: 327  ESIFMLSDMETRFPLNMNVLS-MGRVPQVM-PLDGILKEWLAHRREVLFRRSSFRMQAID 384
            + +  L  +E+ F + M +    G + + M PLD I++++   R E   +R + R + ++
Sbjct: 1301 QDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLD-IIRDFFEVRMEYYAKRKAAREKVLE 1359

Query: 385  RRVEIL 390
               + L
Sbjct: 1360 NEAKRL 1365


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 163/358 (45%), Gaps = 39/358 (10%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R++++   +  L       + +  V E  G  + HG+QS+  +++ 
Sbjct: 757  RSIPSVLDGFKPGQRKVLYGCFKRNLKSEIKVAQLSGYVSEKTG--YHHGEQSLVQTIIG 814

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G   +A RY    ++++   I   +D+    +  
Sbjct: 815  LAQNFVGSNNINLLKPNGAFGTRAAGGKDFSAARYIFTEISKITRAIFNPLDDPIYTYVQ 874

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P LL NG+ GI  G +T+IPS+N        L L+DN    I +
Sbjct: 875  D-DEQSVEPEWYLPVIPMLLVNGSEGIGTGWSTNIPSYN-------PLDLVDN----IRR 922

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            L+    G          +  E  +E    G   ++V  +  ++++   +  + +TEIP +
Sbjct: 923  LMN---GEPMEEMKPWFKGWEGTIEPN--GPDKYKVVGK--IDQIDETT--VEITEIPVK 973

Query: 277  VQKSRLIEKIAELIIAKRIP-LLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFMLS 333
               + + E +   +  ++ P  ++D+ ++   ++R V+      + PD + ++  + +L 
Sbjct: 974  TWTNNVKEFLLAGLGNEKTPAWIKDMEEQHGLNIRFVV-----KMSPDEMAKALKVGLLE 1028

Query: 334  DMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
              +    ++M+ +     +GR+ +      IL+++   R E   +R  F M  +  ++
Sbjct: 1029 KFKLISSISMSNMVAFDPLGRIKRYSSAQEILRDYYYVRLEYYQKRKDFMMDELQNQL 1086


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--ILEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++I+A  +  L       +    V E  G  + HG+QS+Y ++V 
Sbjct: 694 RSIPSVLDGLKPGQRKVIYACFKRNLKSEIKVAQLGGYVSEHTG--YHHGEQSLYQTIVG 751

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  +AA RY    + ++   I   +D+  +++  
Sbjct: 752 LAQDFVGSNNIYLLKPNGAFGTRATGGKDSAAPRYIFTELNKLTRKIFNTLDDPLLNYIQ 811

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
             +E+  EP  +    P +L NGT GI  G +T+IP  N  +I      L+   E+
Sbjct: 812 D-DEQTVEPEWYLPVIPMVLVNGTEGIGTGWSTNIPPFNPMDIVNNVKRLMKGEEM 866


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 690  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 747

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 748  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 808  E-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 865  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 906

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 907  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 961

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 962  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DGFKP  R++I+A  +  L      KK   + G V  +  + HG+QS+  +++
Sbjct: 786 RSIPSVLDGFKPGQRKVIYACFKRNL---IKDKKVVELAGYVSEQTAYHHGEQSLQQTII 842

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV       +   GNFG+    G  AA+ RYT  R++  A  I   +DE  +   
Sbjct: 843 GLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASPRYTFTRLSPFARKIFHPMDEPNL--- 899

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
             ++ ED    EP+V+    P +L NG  GI  G +++IP+++  +I +
Sbjct: 900 -LHHYEDGKKIEPMVYAPILPMVLVNGADGIGTGWSSNIPNYHPADIVQ 947


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 161/360 (44%), Gaps = 36/360 (10%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R++++ + +  L       +    +GE  G  + HG+ S+  +++ 
Sbjct: 738  RSIPSVMDGFKPTQRKVLYGVYKRNLTSEIKVAQLVGYIGEHSG--YHHGEASLTQTIIS 795

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      ++   G FG+    G  A+A RY    +T +   +   +D   +++  
Sbjct: 796  LAQDFVGSNNLNILKPNGGFGSRASGGKDASAARYIFTEVTPITRKVYNTLDNPLLNYLQ 855

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG+ GI  G +T IP  N  +I +   AL++  E+    
Sbjct: 856  D-DEQTVEPQWYVPVLPMILVNGSEGIGSGWSTQIPPFNPVDIVKNIRALMNGEEMV--D 912

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            ++ +  G +    G I           R+G   FR+     +EE+   +  + +TE+P +
Sbjct: 913  MIPWFKGWE----GTIS----------RIGPDKFRMEGN--IEEIDDTT--VEITELPAR 954

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFM 331
            +    + E + + I    K+ P ++D+ ++    ++ V+      ++      L E   +
Sbjct: 955  MWTITMKEFLLQAIAGSDKQKPWIKDMEEQHGVGIKFVVTLSKEEMEKTRRIGLKERFKL 1014

Query: 332  LSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            +S + T    NM      GR+ +   ++ I++++   R +   RR  +       + E L
Sbjct: 1015 ISIINTS---NMVAFDPQGRIKKYDHVNQIIEDYYLVRLDYYQRRKDYMADLFSNQFEKL 1071


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 101/196 (51%), Gaps = 10/196 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T ++   + +S    L+  ++ ++++    R+IP + DGFKP  R++I++  +  L    
Sbjct: 779 TFLDSTAQRISYSQFLQNEFILFSMAD-NIRSIPSMIDGFKPGQRKVIYSAFKRNLVNDQ 837

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
              + A  + E     + HG+QS+  +++ LAQ FV       +   GNFG+    G  +
Sbjct: 838 KVVELAGYISEQAA--YHHGEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSGGKDS 895

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAV 185
           A+ RY   R++  A  +   +DE  ++++  +++ +  EP V+    P +L NG  GI  
Sbjct: 896 ASARYIHTRLSPFARKVFSKLDEPNLEYQ--FDDGNMIEPKVYAPILPMVLVNGADGIGT 953

Query: 186 GMATSIPSHNVQEICE 201
           G +TSIP+++   I E
Sbjct: 954 GWSTSIPNYHPMHIVE 969


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 38/361 (10%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++I+   +  +         A  V E     + HG  S+  +++ 
Sbjct: 689  RSIPNVLDGFKPGQRKVIYGSFKRNITSEIKISTLANYVAEQTD--YHHGPDSLAQTIIG 746

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      +++  G+FG     G  AAA RY    +T++   I    D+   ++  
Sbjct: 747  LAQSFVGSNNIYVLNPIGSFGTRATGGKDAAAPRYISTELTKITRKIFHPFDDPLYNYLQ 806

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E   EP  +    P LL NG  GI  G +T+IP  N  +I      L++  E  +E+
Sbjct: 807  E-DENTVEPEWYLPILPMLLINGGEGIGTGWSTNIPPFNPLDIVRNLRHLMNGEE--LEE 863

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G    TG I            ++G   +RV  R  +E+   G   + +TE+P +
Sbjct: 864  MHPWFRG---WTGTI-----------EKIGPQRYRVYGR--IEQT--GPCALEITELPAR 905

Query: 277  VQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            +  S L E    L++      K  P ++D+ ++    +R V+      +D   +M   + 
Sbjct: 906  MWTSTLKE---HLLLGLGGNDKMKPWIKDLEEQHGNGIRFVVRLTQEEMDKTRVM-GFYE 961

Query: 332  LSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
               + +   LN  V     G++ +   +  IL E+   R E   +R  +  + +   VE 
Sbjct: 962  RFKLISTISLNNMVAFDPHGKIKKYENVSEILTEFYYVRLEYYQKRKDYMSERLQWEVEK 1021

Query: 390  L 390
            L
Sbjct: 1022 L 1022


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 196/438 (44%), Gaps = 76/438 (17%)

Query: 12   LVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L  ++ +AV+ + F   E  L   L    ER+IP L DGFKP  R+++ A       F  
Sbjct: 703  LYNKDTRAVTFKDFVNRELVLFSNLDN--ERSIPCLVDGFKPGQRKVLFAC------FKR 754

Query: 71   AFK---KSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
            A K   K A++ G V  I   H HG+QS+  ++V LAQ FV      L+   G FG    
Sbjct: 755  ADKREVKVAQLAGAVAEISAYH-HGEQSLMGTIVNLAQDFVGSNNINLLLPIGQFGTRLQ 813

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGT 180
             G  +A+ RY   +++ V   I    D++ + F   Y E    EP  +    P +L NG 
Sbjct: 814  GGKDSASARYIFTQLSPVTRSIFPAHDDNVLRF--LYEENQRIEPEWYCPIIPMVLVNGA 871

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +T+IP++N ++I +           +I++L             I  ES+++I 
Sbjct: 872  QGIGTGWSTNIPNYNPRDIVK-----------NIKRL-------------IAGESQKAIA 907

Query: 241  ESYRLGRGGFRV--RARW-CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELII----- 291
              Y+  RG       +R+ C  EV       I +TE+P +       EK+ E ++     
Sbjct: 908  PWYKNFRGNIIQIDSSRYACYGEVATIDDNTIEITELPVKQWTQDYKEKVLEALLDSSDK 967

Query: 292  AKRIPLLEDIRDESAE-DVRIV--LFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVL- 346
             K+ PL+ D ++   +  V+ V  L P K R L+    +  +F L  +     +N   + 
Sbjct: 968  DKKAPLVLDYKEYHTDTTVKFVVKLAPGKLRELERGEDLHQVFKLQSV-----INTTCMV 1022

Query: 347  ---SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR---MQAIDRRVEILKGLLIAYLNI 400
               + G +      + I +E+   R+E   +R  +    +QA  +R+      ++A +N 
Sbjct: 1023 LFDAAGCLRTYSSPEEITQEFYDCRKEKYIQRKDYLLGVLQAQSQRLTNQARFIVAKIN- 1081

Query: 401  DEIIAIIRNEDKPKPVMV 418
            +EI+     E+K K V+V
Sbjct: 1082 NEIVM----ENKKKAVIV 1095


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA
Sbjct: 4   AKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKSFAA 63

Query: 129 YR 130
            R
Sbjct: 64  MR 65


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 67/375 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDVKVVELAGYVSGMTAYQHGDNSLHT 858

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 859  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 918

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+ +    L+ 
Sbjct: 919  -----VNNIDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMA 973

Query: 209  NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
              E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 974  GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 1013

Query: 262  GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRS 319
                    +TE+P         +K+ E+I A+++P  ++D +D  +  DV  ++  + + 
Sbjct: 1014 --------ITELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKH 1065

Query: 320  LDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +R
Sbjct: 1066 MKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKR 1122

Query: 376  SSFRMQAIDRRVEIL 390
              + +  +  +++ L
Sbjct: 1123 KQYLLSELQTQLDKL 1137


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAEL 142
           GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYTE+R+++ +EL
Sbjct: 1   GKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL 60

Query: 143 IL 144
           +L
Sbjct: 61  LL 62


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 40/360 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 691  RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 748

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G  AAA RY    + ++   I    D+    +  
Sbjct: 749  LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 808

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E+
Sbjct: 809  E-DEKTVEPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 865

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            +  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P +
Sbjct: 866  MHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPAR 907

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFML 332
               S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I   
Sbjct: 908  TWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGFY 962

Query: 333  SDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   VE
Sbjct: 963  ERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1022


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 119/273 (43%), Gaps = 49/273 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HG+ S+  
Sbjct: 822  RSIPSVIDGLKPGQRKVLYTC------FRRNIKKDVKVVELAGSVSGSTDYAHGEASMQG 875

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I  G D+  +
Sbjct: 876  TIVNLAQNFVGTNNINFLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFHGHDDALL 935

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 Y E D    EP +F    P +L NG+SGI  G ++ IP+ N  +I E        
Sbjct: 936  ----KYGESDGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDIIE-------- 983

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR------LGRGGFRVRARWCVEEVGR 263
               +I++ ++          G   E    ++  Y+         G  R +    V + G 
Sbjct: 984  ---NIKRRMQ---------PGATKEDMTPMIPWYKGFTGTTTELGPDRYQFTGTVRQTGD 1031

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                + +TE+P +       EK+ E+I A++ P
Sbjct: 1032 NE--VEITELPVRYWTQDFKEKLEEIIKAEKAP 1062


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 50/72 (69%)

Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++ + +   + + +L YA+S I  RA+PDL+DG KPV RRII+AM ++G+      KKS
Sbjct: 17 KIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYAMDDLGITADKPHKKS 76

Query: 76 ARIVGEVIGKLH 87
          ARIVGEVIGK H
Sbjct: 77 ARIVGEVIGKYH 88


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 786 -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 840

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 841 GDELVPMK-------PWFR--GFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 879

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
            ++E+P +       +K+ E+I A+++P  ++D +D
Sbjct: 880 EISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKD 915


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 162/364 (44%), Gaps = 45/364 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 675  RSIPSVIDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 728

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 729  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLL 788

Query: 153  DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
               +T + +  EP  +    P +L NG  GI  G +TSIP++N +++      L+   E+
Sbjct: 789  -VNNTDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMAGEEL 847

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
               K       P F   G   E   S          G R +    +++ G     + +TE
Sbjct: 848  VPMK-------PWF--RGFKGEVTGS----------GDRYKFSGIIKQTGDNE--VEITE 886

Query: 273  IPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAE-DVRIVLFPKNRSLDPDL---LME 327
            +P +       +++ E+I A ++P  ++D +D +   +V  ++    + +   L   L E
Sbjct: 887  LPIRTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKALEEGLEE 946

Query: 328  SIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
               ++  + T    NM    + GR+ +    + IL+ + A R ++  RR    +  +  +
Sbjct: 947  KFKLIKPIATS---NMVAFDAEGRITRYETPEDILQAFYAVRIKLYERRKQHLLSQLQSQ 1003

Query: 387  VEIL 390
            ++ L
Sbjct: 1004 LDKL 1007


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 4/128 (3%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           ++ ++T F +NM  L +   P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+
Sbjct: 1   MTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILE 59

Query: 392 GLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GL IA  NID II +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+
Sbjct: 60  GLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIE 119

Query: 449 SELDNLLA 456
            E  NL+A
Sbjct: 120 EEYQNLVA 127


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 47/277 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N             
Sbjct: 786 -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYN------------- 827

Query: 209 NPEISIEKLLEYIIGPDF-PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            PE  ++ L   ++G +  P        +  +  S      G R +    +++ G     
Sbjct: 828 -PEDVVDNLKRLMVGDELVPMKPWFRGFKGEVTGS------GDRYKFSGIIKQTGDNE-- 878

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
           + ++E+P +       +K+ ++I A+++P  ++D +D
Sbjct: 879 VEISELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKD 915


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
           [Crithidia fasciculata]
          Length = 1239

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RAIP   DG KP  R+I+ AM +      A   + +  + EV    H HG+ S+ +++V+
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLKRHSSEAAKVAQLSGYISEV-SSFH-HGEASLQETIVK 740

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+ D
Sbjct: 741 MAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLDYID 800

Query: 157 TYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS- 213
              EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+      
Sbjct: 801 ---EEGTMVEPNHYVPILPLLLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQ 857

Query: 214 -IEKLLEYIIG 223
            +  L+ + +G
Sbjct: 858 VVRNLVPWAVG 868


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 43/61 (70%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 51/72 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGV 147
           ++++A  +LQ +
Sbjct: 61  LSEMAGYLLQDI 72


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 61/390 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 736  ERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 792

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 793  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 852

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       IDN + 
Sbjct: 853  ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDI-------IDNIKR 902

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWCI 268
             I K       P  P           +V  Y+  +G      +   E +G      +  +
Sbjct: 903  YINK------EPLIP-----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDTL 945

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL-- 325
             +TE+P +       E + EL+  ++  L+ D  D S+ ED+   +      +DP  L  
Sbjct: 946  EITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTI-----KMDPAKLQK 1000

Query: 326  -----MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
                 +E +F L    T   + +   ++        LD ILKE+   R +    R S+ +
Sbjct: 1001 AEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELD-ILKEFCYQRLKAYENRKSYLI 1059

Query: 381  QAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              +++   I+            I+AI+ NE
Sbjct: 1060 SKLEKEKRIISN------KTKFILAIVNNE 1083


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 45/276 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    KK  ++V   G V G   + HGD S++ 
Sbjct: 803  RSIPSVVDGLKPGQRKVLYTM------FKRNVKKDIKVVELAGYVSGMTAYQHGDNSLHT 856

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 857  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 916

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 917  -----ANNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 971

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 972  GDELVPMK-------PWF--RGFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 1010

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
             ++E+P +       +K+ E+I A+++P  ++D +D
Sbjct: 1011 EISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKD 1046


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 61/390 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 736  ERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 792

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 793  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 852

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       IDN + 
Sbjct: 853  ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDI-------IDNIKR 902

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWCI 268
             I K       P  P           +V  Y+  +G      +   E +G      +  +
Sbjct: 903  YINK------EPLIP-----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDTL 945

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL-- 325
             +TE+P +       E + EL+  ++  L+ D  D S+ ED+   +      +DP  L  
Sbjct: 946  EITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTI-----KMDPAKLQK 1000

Query: 326  -----MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
                 +E +F L    T   + +   ++        LD ILKE+   R +    R S+ +
Sbjct: 1001 AEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELD-ILKEFCYQRLKAYENRKSYLI 1059

Query: 381  QAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              +++   I+            I+AI+ NE
Sbjct: 1060 SKLEKEKRIISN------KTKFILAIVNNE 1083


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 43/61 (70%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 69/376 (18%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 858

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDE--- 149
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE   
Sbjct: 859  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLL 918

Query: 150  -DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
             + VD       E   PVV     P +L NG  GI  G +TSIP++N +E+       +D
Sbjct: 919  VNNVDDGKVIEPETYVPVV-----PLILINGADGIGTGWSTSIPNYNPEEV-------VD 966

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG--------GFRVRARWCVEE 260
            N       L   ++G             E +V      RG        G R +    +++
Sbjct: 967  N-------LKRLMVG-------------EELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQ 1006

Query: 261  VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNR 318
                   + +TE+P +       +K+ E+I A+++P  ++D +D  +  +V  ++  + +
Sbjct: 1007 TADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEK 1064

Query: 319  SLDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374
             +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +
Sbjct: 1065 HMKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEK 1121

Query: 375  RSSFRMQAIDRRVEIL 390
            R  + +  +  +++ L
Sbjct: 1122 RKQYLLSELQTQLDKL 1137


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 165/376 (43%), Gaps = 69/376 (18%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 858

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 859  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 918

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +E+       +D
Sbjct: 919  -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEV-------VD 966

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG--------GFRVRARWCVEE 260
            N       L   ++G             E +V      RG        G R +    +++
Sbjct: 967  N-------LKRLMVG-------------EELVPMKPWFRGFKGEVSGSGDRYKFSGIIKQ 1006

Query: 261  VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNR 318
                   + +TE+P +       +K+ E+I A+++P  ++D +D  +  +V  ++  + +
Sbjct: 1007 TADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEK 1064

Query: 319  SLDPDL---LMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374
             +   L   L E   ++  + T    NM    + GR+ +    + IL+ + A R ++  +
Sbjct: 1065 HMKKALEEGLEEKFKLVKQIATS---NMVAFDAEGRITRYETPEDILRAFYAVRIKLYEK 1121

Query: 375  RSSFRMQAIDRRVEIL 390
            R  + +  +  +++ L
Sbjct: 1122 RKQYLLSELQTQLDKL 1137


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 7/176 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER++P L DG KP  R++++              + A  V E+    + HG+QS+  +++
Sbjct: 704 ERSVPSLCDGLKPGQRKVLYTCLRRNDKREVKVAQLAGSVAELSA--YHHGEQSLLGTII 761

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ +V      L+   G FG     G  AA+ RY    ++ +  L+   VDE+ + ++
Sbjct: 762 NMAQNYVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLLTWQ 821

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
              N++  EP  +    P +L NGT GI  G +T +P+H+++E+ +    LI+  E
Sbjct: 822 YDDNQK-VEPSWYCPIIPTVLVNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEE 876


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMIN 851


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 43/352 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            R+IP   DG KP  R++++ M +   +   +  K   +VG V+G+  + HG+ ++  ++V
Sbjct: 785  RSIPSAIDGLKPGQRKVMYVMFDRKSN---SELKVNTLVGNVLGQAAYHHGEAALSMTIV 841

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+  +G FG   + G  AA+ RY    + ++A  +    D+  +D  
Sbjct: 842  GLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAASGRYIFTALPKIARALFPATDDALLD-- 899

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
              Y E+D    EP  +    P +L NG  GI  G +TS+P++N  EI             
Sbjct: 900  --YLEDDGQKVEPHWYIPVVPQVLLNGAEGIGTGWSTSVPNYNPHEI------------- 944

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
             +  L   + G D              VE +  G G F++  R  V ++   ++ I  TE
Sbjct: 945  -VANLRRRMAGEDVVPMKPWYRGFNGDVEEF--GPGRFKISGR--VTQIDEKTYEI--TE 997

Query: 273  IPYQVQKSRLIEKIAELIIAK-RIP-LLEDIRD---ESAEDVRIVLFPKNRSLDPDLLME 327
            +P +   S   E + E I++  +IP  ++D ++   ES  +  + L  K ++   D  +E
Sbjct: 998  LPIRTWTSNYKELLEERIVSSDKIPATIKDYKEYHTESTVNFIVELTAKGQAEIADKGVE 1057

Query: 328  SIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + F LS   +    NM +    G++ +    + IL+E+   R     +R  +
Sbjct: 1058 AFFKLSCQIS--TTNMVLFDQDGKIKKYTSAEEILEEFYLLRLSYYQKRKEY 1107


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMIN 851


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMIN 851


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 49/350 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            R+IP + DGFKP  R++++   +  L    +  K A++VG +     + HG+ S+  ++V
Sbjct: 747  RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYHHGEGSLAQTIV 803

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+   G FG+    G   +A RY    +T +  +I   +D+D     
Sbjct: 804  GLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLY--- 860

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
             TY ++D+   EP  +    P LL NG  GI  G +T+IPS N  +I  A +  + N E 
Sbjct: 861  -TYVQDDAQTVEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIV-ANIRRMMNGEE 918

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
             ++      + P F       +  E  +E  R+    ++V  +  +E+V   +  + +TE
Sbjct: 919  PVD------MTPWF-------KGWEGDLE--RISPEKYKVSGK--IEQVDDDT--VEITE 959

Query: 273  IPYQVQKSRLIEKIAELIIA---KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LM 326
            IP +         + E ++A      P ++D+ ++   ++R V+      +D  L   L+
Sbjct: 960  IPIKT----WTNSVKEFLLAGLGNDKPWIKDMEEQHGINIRFVVRLSKEEMDKSLRMGLL 1015

Query: 327  ESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            E   ++S +      NM      GR+ +    + ILK++   R E+  RR
Sbjct: 1016 ERFKLISSISLS---NMVAFDPQGRIKKYSSANEILKDYYWARLELYQRR 1062


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 28/278 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 734 RSIPSVLDGFKPGQRKVLYGCFKRNLKSEIKVNQLAGYVSENTG--YHHGEQSLVQTIIG 791

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ F+      ++   G+FG+    G   +A RY    + ++   I   +D     +  
Sbjct: 792 LAQDFIGSNNLNILKPNGSFGSRAAGGKDFSAPRYIFTEINEITRKIFNPLDNALYKYVQ 851

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
             +E+  EP  +    P LL NG+ GI  G +T++P  N  +I      L++  E++  +
Sbjct: 852 D-DEQTVEPEWYLPVLPMLLVNGSEGIGTGWSTNVPPFNPTDIVNNIKKLMNGEEMN--E 908

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           +  +  G +   G I+             G+  FRV  R  +E+       + +TEIP +
Sbjct: 909 MSPWYRGWE---GEIVAN-----------GKDRFRVIGR--IEQTDETE--VEITEIPVK 950

Query: 277 VQKSRLIEKIAELIIAKRI-PLLEDIRDESAEDVRIVL 313
              + + E +   +  +++ P ++D+ ++   ++R V+
Sbjct: 951 TWTNNMKEFLLNGLGTEKVKPWIKDMEEQHGMNIRFVV 988


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 10/208 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L    
Sbjct: 652 TTVDHSIKKLRYSDFINKELIQFSIYDT-ERSIPSVIDGFKPGQRKVLFGCFKRNLKNEC 710

Query: 71  AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDS 125
              K A++ G +     + HG+ S+  ++V +AQ FV      L+   G FG+    G  
Sbjct: 711 ---KVAQLTGYIAEHSAYHHGENSLQQTIVNMAQDFVGSNNINLLLPCGQFGSRKEGGKD 767

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY   +++ +   I    D+  +D+++  + +  EP  +    P +L NG  GI  
Sbjct: 768 AAAARYIFTKLSPLTRYIFLQEDDPILDYQND-DGQIIEPYYYLPIIPMVLVNGAEGIGT 826

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS 213
           G +T IPS+N  ++ +  +  +DN +++
Sbjct: 827 GFSTYIPSYNPIDVIDNIVNFLDNKDMN 854


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1432

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 162/385 (42%), Gaps = 57/385 (14%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK-------SARIVGEVIG-KLHPHGD 91
            +R+IP + DG KP  R+I+            AFKK        A++VG V     + HG+
Sbjct: 699  QRSIPSMVDGLKPGQRKILFT----------AFKKIVVKEMKVAQLVGYVSSMSAYHHGE 748

Query: 92   QSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGV 147
            QS+  +++ +AQ +V      L+   G FG  N  G  AA+ RY    ++ V  ++    
Sbjct: 749  QSLASAIIGMAQDYVGSNNINLLQPNGQFGTRNSGGKDAASARYIFTILSPVTRILFPKD 808

Query: 148  DEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            D   +D+    NE+    EP  +    P +L NG+ GI  G +T IP++N +EI      
Sbjct: 809  DHILLDY---LNEDGQSIEPTWYMPIIPTVLVNGSEGIGTGWSTFIPNYNPREIVANVRC 865

Query: 206  LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
             ++          E ++  D    G      +  +E      GG         EEV   +
Sbjct: 866  RLNG---------ESMVPMDPWYRGF-----KGTIEKTASKEGGCTYTITGLYEEVDDTT 911

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
              I +TE+P +       + +  L      P  +D++           +  ++S+D DL+
Sbjct: 912  --IRITELPIRRWNDDYKQFLQSLKTDNGAPFFQDVK----------AYNDDKSVDFDLI 959

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD--GILKEWLAHRREVLFRRSSFRMQAI 383
            +    ML+  +  F     + +      +   D  G++K++ A   ++L      R++  
Sbjct: 960  LSEENMLAARQEGFLKKFKLTTTIATSNMHLFDRKGVIKKY-ATPEQILEEFFELRLEYY 1018

Query: 384  DRRVE-ILKGLLIAYLNIDEIIAII 407
            ++R E +LK L I  L ++  +  I
Sbjct: 1019 EKRKETMLKNLEIELLKLENKVRFI 1043


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 164/361 (45%), Gaps = 41/361 (11%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP++ DGFKP  R++++   +  L       + A  V E     + HG+QS+  +++ 
Sbjct: 270 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA--YHHGEQSLAQTIIG 327

Query: 101 LAQPFV--QRYPLISGQGNFGNI---DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           LAQ FV      L+   G FG       D+AAA  Y    + ++   I    D+    + 
Sbjct: 328 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARXYIYTELNKLTRKIFHPADDPLYKYI 387

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
              +E+  EP  +    P +L NG  GI  G +T IP  N  EI +    L+++ E  +E
Sbjct: 388 QE-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LE 444

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           ++  +  G      G I E     +E  R     +R+  R  +E++G     + +TE+P 
Sbjct: 445 QMHPWFRG----WTGTIEE-----IEPLR-----YRMYGR--IEQIGDN--VLEITELPA 486

Query: 276 QVQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--IFM 331
           +   S + E +   +    K  P ++D+ ++  ++++ ++     +L P+ + ++  I  
Sbjct: 487 RTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFII-----TLSPEEMAKTRKIGF 541

Query: 332 LSDMETRFPLN-MNVLSM---GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
               +   P++ MN+++    G++ +   ++ IL E+   R E   +R     + +   V
Sbjct: 542 YERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEV 601

Query: 388 E 388
           E
Sbjct: 602 E 602


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 63/374 (16%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 741  ERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 797

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 798  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 857

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--- 209
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       ID    
Sbjct: 858  ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPL 914

Query: 210  -PEISIEKLLEYIIGPD----FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             P +   K  +  I P+    + T GII +  +  +E                       
Sbjct: 915  VPMVPWYKDFKGRIEPNGKSGYETIGIINKIDDETLE----------------------- 951

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
                 +TE+P +       E + EL+  ++  L+ D  D S+ EDV   +      +DP 
Sbjct: 952  -----ITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTI-----KMDPT 1001

Query: 324  LL-------MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             L       +E +F L    T   + +   ++        LD ILK++  HR      R 
Sbjct: 1002 KLKRAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYASELD-ILKDFCFHRLNAYTDRK 1060

Query: 377  SFRMQAIDRRVEIL 390
            ++ +  +++   I+
Sbjct: 1061 NYLISKLEKEKRII 1074


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 51/71 (71%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVAG 61

Query: 142 LILQGVDEDAV 152
            +L+ +++  V
Sbjct: 62  YLLEDIEKKTV 72


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 63/426 (14%)

Query: 11   TLVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T V+ N  ++S   F  +E  L     T  ER+IP L DG+KP  R+++ A  +  +   
Sbjct: 766  TFVDHNASSLSYSDFVNKELILFSRYDT--ERSIPQLVDGWKPGQRKVLFACIKKNMKHE 823

Query: 70   AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGNID--GDS 125
                + A  V EV    + HG+ S+  ++V +AQ FV    L  +   G FG+    G  
Sbjct: 824  LKVAQLAGYVSEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKD 881

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGIA 184
            A+A RY   R+     L+    D+  +++   Y E +  EP ++    P +L NG+ GI 
Sbjct: 882  ASAARYIFTRLAFYTRLVFHEADDPILEYE--YEEGQRIEPKMYVPVIPTVLINGSEGIG 939

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++              IE L  YI G          E  + +   YR
Sbjct: 940  TGWSSFVPNYNPRDV--------------IENLRRYIDG----------EEMQRMTPWYR 975

Query: 245  LGRGGFRVR-----ARWCVEEVGRGSWC----IVVTEIPYQVQKSRLIEKIAELI--IAK 293
                GFR R     A    E +G    C      +TE+P +       E + E +    K
Sbjct: 976  ----GFRGRIEENAAGTGFETIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEK 1031

Query: 294  RIPLLEDIRDESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-- 348
            R  L+ D RD S+ +     + +  +         +E  F L     +  L++  L++  
Sbjct: 1032 RDTLIADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYFKL-----KSSLSITNLTLFD 1086

Query: 349  --GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
              GRV +      I+KE+   R E   RR ++ +  +++   IL   L   L +     I
Sbjct: 1087 PHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELI 1146

Query: 407  IRNEDK 412
            I N+ K
Sbjct: 1147 INNKRK 1152


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 179/426 (42%), Gaps = 63/426 (14%)

Query: 11   TLVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T V+ N  ++S   F  +E  L     T  ER+IP L DG+KP  R+++ A  +  +   
Sbjct: 766  TFVDHNASSLSYSDFVNKELILFSRYDT--ERSIPQLVDGWKPGQRKVLFACIKKNMKHE 823

Query: 70   AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGNID--GDS 125
                + A  V EV    + HG+ S+  ++V +AQ FV    L  +   G FG+    G  
Sbjct: 824  LKVAQLAGYVSEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKD 881

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGIA 184
            A+A RY   R+     L+    D+  +++   Y E +  EP ++    P +L NG+ GI 
Sbjct: 882  ASAARYIFTRLAFYTRLVFHEADDPILEYE--YEEGQRIEPKMYVPVIPTVLINGSEGIG 939

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++              IE L  YI G          E  + +   YR
Sbjct: 940  TGWSSFVPNYNPRDV--------------IENLRRYIDG----------EEMQRMTPWYR 975

Query: 245  LGRGGFRVR-----ARWCVEEVGRGSWC----IVVTEIPYQVQKSRLIEKIAELI--IAK 293
                GFR R     A    E +G    C      +TE+P +       E + E +    K
Sbjct: 976  ----GFRGRIEENAAGTGFETIGLVRRCGEDTYEITELPIKRWTQDYKEWLEENLPTAEK 1031

Query: 294  RIPLLEDIRDESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-- 348
            R  L+ D RD S+ +     + +  +         +E  F L     +  L++  L++  
Sbjct: 1032 RDTLIADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYFKL-----KSSLSITNLTLFD 1086

Query: 349  --GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
              GRV +      I+KE+   R E   RR ++ +  +++   IL   L   L +     I
Sbjct: 1087 PHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELI 1146

Query: 407  IRNEDK 412
            I N+ K
Sbjct: 1147 INNKRK 1152


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 18/203 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R++P++ DG KP  R++++A  +  L       + A    E     + HG+ S++ +++ 
Sbjct: 716 RSLPNVVDGLKPSQRKVLYACFKRNLKDEIKVAQLAGYCAEHTA--YHHGEASLHSTIIG 773

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L++  G FG   + G+ AA+ RY    ++ ++ L+   VD+D +    
Sbjct: 774 MAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIFTHLSPLSRLLFP-VDDDMLL--- 829

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            Y EED    EP  F    P LL NG  GI  G +T IP HN  ++     A +D  E  
Sbjct: 830 NYKEEDGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQHNPLDVLNYIRAKLD--ETK 887

Query: 214 IEKLLEYIIGPDFPTGGIIVESR 236
              +  ++ G +   GGI V+S+
Sbjct: 888 KPAIRPWVKGFE---GGITVDSK 907


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain
           Friedlin]
          Length = 1236

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G   AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMIN 851


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y ++V + QPF  RYPL+ GQGN+G  D   S AA
Sbjct: 4   AKFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPDDPKSFAA 63

Query: 129 YR 130
            R
Sbjct: 64  MR 65


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 55/370 (14%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
           ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 228 ERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 284

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 285 INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEFDDPILKY 344

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
               NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       ID    
Sbjct: 345 ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKE-- 399

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWCI 268
                      P  P           +V  Y+  +G      +   E +G         +
Sbjct: 400 -----------PLVP-----------MVPWYKDFKGRIESNGKSGYETIGIINKIDDETL 437

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL-- 325
            +TE+P +       E + EL+  ++  L+ D  D S+ EDV   +      +DP  L  
Sbjct: 438 EITELPIKRWTQDYKEFLEELLTDEKNQLILDYIDNSSHEDVCFTI-----KMDPVKLKK 492

Query: 326 -----MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
                +E +F L    T   + +   ++        LD ILK++  HR      R S+ +
Sbjct: 493 AEEEGLEKVFKLKSTLTTTNMTLFDSNLKLQRYASELD-ILKDFCFHRLNAYNERKSYLI 551

Query: 381 QAIDRRVEIL 390
             +++   I+
Sbjct: 552 SKLEKEKRII 561


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7  EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75 SARIVGEVIG 84
          SAR VG+V+G
Sbjct: 67 SARTVGDVLG 76


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 59/283 (20%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQSDEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 786 -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 840

Query: 209 NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 841 GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 880

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
                   +TE+P +       +K+ E+I A ++P  ++D +D
Sbjct: 881 --------ITELPIRTWTQDFKDKLEEIIKADKVPSFIKDYKD 915


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 181/410 (44%), Gaps = 63/410 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++ R L +  +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRSKXFID-RELIHFSNADNLRSIPSLCDGLKPGQRKILFSCFKRNL- 706

Query: 68   FGAAFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG- 119
                  KS   V ++IG +     + HG+QS+  +++ +AQ FV      L+   G FG 
Sbjct: 707  ------KSEIKVAQLIGYVAEHSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGT 760

Query: 120  -NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF----PN 174
             N  G   A+ RY    ++++  ++    D+  + +      ED   VV P  +    P 
Sbjct: 761  RNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKYL-----EDDNQVVEPEWYMPIIPM 815

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
             L NG+SGI  G +T IP++N + I E     ++    +  +L  +  G     G I + 
Sbjct: 816  CLVNGSSGIGTGWSTDIPNYNHKGIVEQIRGKLEGRPFT--ELHPWYKG---FQGQIEIN 870

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY-QVQKSRLIEKIAELII-A 292
                        +GG+ V+ ++ ++EV      I +TE+P  +  +   +  I EL+   
Sbjct: 871  P-----------KGGYIVKGQYEIDEVEE---TIKITELPVGKWTRDYKVVLIQELLSPP 916

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--- 349
            K  P +EDIR E   + R+         +   +   I    D+E +  L+  + +     
Sbjct: 917  KGEPEIEDIR-EYHTNNRV-------HFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVM 968

Query: 350  -----RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
                 ++ +      I++E+ A R +   +R  + +  I R V+IL+  +
Sbjct: 969  FNDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKM 1018


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVAG 61

Query: 142 LILQGVDEDAV 152
            +L  +++  V
Sbjct: 62  YLLADIEKKTV 72


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 4/99 (4%)

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGFRVRARWCVEEVG 262
           + LIDNP+ + ++LL  I GPDFPTG  I+ ++   +ESY   G+G   +R++  +E++ 
Sbjct: 3   IMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG--IESYFETGKGNVVIRSKVEIEQLQ 60

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             S  +VVTEIPY V K+ LIEKI EL+ A+ I  + DI
Sbjct: 61  TRS-ALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADI 98


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 122/284 (42%), Gaps = 46/284 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HG+ S+  
Sbjct: 810  RSIPSVMDGLKPGQRKVLYTC------FRRNIKKDVKVVELAGSVSGSTDYAHGEASMQG 863

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  AA+ RY   R++  A  +    D+  +
Sbjct: 864  TIVGLAQNFVGSNNINYLEPSGNFGSRLRGGADAASARYIYTRLSPFARRLFHAHDDALL 923

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 Y E D    EP +F    P +L NG+SGI  G ++ IP+ N  +I       IDN
Sbjct: 924  ----KYGESDGHKIEPEMFIPVLPTILVNGSSGIGTGWSSEIPNFNPMDI-------IDN 972

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGS 265
              I ++              G   E  + +   Y+   G     A    +  G     G 
Sbjct: 973  IRIRLQ-------------DGASKEDMKPMTPWYKGFTGTTETLAADRFQFTGTIRQTGE 1019

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAED 308
              + VTE+P +       EK+ ++I A++ P  ++D  D +  D
Sbjct: 1020 NELEVTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDYNTPD 1063


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 59/283 (20%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
           R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 725

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 726 TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLL 785

Query: 153 DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                 N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++ +    L+ 
Sbjct: 786 -----VNNVDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMA 840

Query: 209 NPE-ISIEKLLEYIIGPDFPTG------GIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             E + ++       G    +G      GII ++ ++ VE                    
Sbjct: 841 GEELVPMKPWFRGFKGEVTGSGDRYKFSGIIKQTADNEVE-------------------- 880

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
                   ++E+P +       +K+ E+I A+++P  ++D +D
Sbjct: 881 --------ISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKD 915


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 197/463 (42%), Gaps = 74/463 (15%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N  N +  ++ + K +S    + +  + +++  +  R++P+L DGFKP HR++ +   E 
Sbjct: 700  NTYNPDNYLDPSKKRISYYDFIHKELITFSVDDV-LRSVPNLMDGFKPSHRKVFYGSVEK 758

Query: 65   GLDFGAAFKKSARI---VGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGN 117
             +     +K+  ++    G V  + K H HGDQS+  ++V +AQ +V      L+   G 
Sbjct: 759  NI-----YKQEIKVSDLTGFVSNMTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGM 812

Query: 118  FGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKF 172
            FG+    G  +A+ RY   ++  +A+ I    D D +     +  ED+   EPV +    
Sbjct: 813  FGSRLTGGKDSASPRYLNTKLDDLAKKIFIDYDFDILQ----HQSEDNCRIEPVYYAPII 868

Query: 173  PNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEI----------SIEKL--L 218
            P +L NG  GI  G +T I   N ++I      L+  +NP+           +IEK+   
Sbjct: 869  PMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMKPWFRHLTGTIEKIDGA 928

Query: 219  EY-------IIG------PDFPTG-----------GIIVESRESIVESYRLGRGGFRVRA 254
            +Y       IIG       D P G            +IV+      E  +  +     + 
Sbjct: 929  KYISRAKYEIIGKDTIHITDLPVGIWTDNYKAFLDNLIVQGTAQNAEEKKASKAVSSAKN 988

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR--DESAEDVRIV 312
                 + G  +      + P   +KS   +K     +AK+ P+   I+   E   D+RI 
Sbjct: 989  TKTTTKAGSKTGS-RTRKNPALAKKS---QKSVTAKVAKKNPVASSIKTYSEDCTDIRIS 1044

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM----GRVPQVMPLDGILKEWLAHR 368
                      D L++S  + + ++   PLN+  + +    G++ +      IL+ ++  R
Sbjct: 1045 FTIVFHPGKLDTLIKSGKLDTGLKLVKPLNLTNMHLFNEKGKIKKYDTYGAILRNFVKVR 1104

Query: 369  REVLFRRSSFRMQAIDRRVEILKG--LLIAYLNIDEIIAIIRN 409
              +  +R  + +    + ++ILK     I Y+ I+  I I +N
Sbjct: 1105 LNLYQKRKDYLLGKWKKEMDILKWKVKFIEYV-IEGKIVIFKN 1146


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 42/374 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
            R+IP L DG KP  R+I+ A  +  L       K A++ G V     + HG+QS+  ++V
Sbjct: 672  RSIPSLCDGLKPGQRKILFACFKRNLKNEI---KVAQLSGYVAEHSAYHHGEQSLESTIV 728

Query: 100  RLAQPFVQ----RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ FV      Y +  GQ    N+ G  AA+ RY    + ++   +    D+  + + 
Sbjct: 729  GMAQSFVGTNNINYLMPIGQFGSRNMGGKEAASARYIHTCLNKITRCVFPEPDDHILYYL 788

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
            +   ++  EP+ +    P  L NG  GI  G +TSIP +N +E+ ++    +    +   
Sbjct: 789  EDEGQQ-VEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMG--VPFT 845

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
             LL +  G  F TG I    +  I  S     G + +     +E          +TE+P 
Sbjct: 846  DLLPWYKG--F-TGEISNNEKSQITVS-----GKYHLVNETTIE----------ITELPI 887

Query: 276  QV----QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIF 330
            +      K+ L EK+       + P +EDI++  A + V  V+    + ++  +  E I 
Sbjct: 888  KKWIRDYKNFLEEKLES--TKDKDPEIEDIKEYHAGNRVHFVVKMSEKQMEK-VQREGID 944

Query: 331  MLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
                +++  P    VL    G++ +   +  I++E+   R     RR  + +  I+R +E
Sbjct: 945  KYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIERDLE 1004

Query: 389  IL---KGLLIAYLN 399
            IL   K  ++A +N
Sbjct: 1005 ILSNKKRFILAVIN 1018


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 42/374 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
            R+IP L DG KP  R+I+ A  +  L       K A++ G V     + HG+QS+  ++V
Sbjct: 690  RSIPSLCDGLKPGQRKILFACFKRNLKNEI---KVAQLSGYVAEHSAYHHGEQSLESTIV 746

Query: 100  RLAQPFVQ----RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             +AQ FV      Y +  GQ    N+ G  AA+ RY    + ++   +    D+  + + 
Sbjct: 747  GMAQSFVGTNNINYLMPIGQFGSRNMGGKEAASARYIHTCLNKITRCVFPEPDDHILYYL 806

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
            +   ++  EP+ +    P  L NG  GI  G +TSIP +N +E+ ++    +    +   
Sbjct: 807  EDEGQQ-VEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMG--VPFT 863

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
             LL +  G  F TG I    +  I  S     G + +     +E          +TE+P 
Sbjct: 864  DLLPWYKG--F-TGEISNNEKSQITVS-----GKYHLVNETTIE----------ITELPI 905

Query: 276  QV----QKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIF 330
            +      K+ L EK+       + P +EDI++  A + V  V+    + ++  +  E I 
Sbjct: 906  KKWIRDYKNFLEEKLES--TKDKDPEIEDIKEYHAGNRVHFVVKMSEKQMEK-VQREGID 962

Query: 331  MLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
                +++  P    VL    G++ +   +  I++E+   R     RR  + +  I+R +E
Sbjct: 963  KYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIERDLE 1022

Query: 389  IL---KGLLIAYLN 399
            IL   K  ++A +N
Sbjct: 1023 ILSNKKRFILAVIN 1036


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 49/350 (14%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            R+IP + DGFKP  R++++   +  L    +  K A++VG +     + HG+ S+  ++V
Sbjct: 747  RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYHHGEGSLAQTIV 803

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+   G FG+    G   +A RY    +T +  +I   +D+D     
Sbjct: 804  GLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLY--- 860

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
             TY ++D+   EP  +    P LL NG  GI  G +T+IPS N  +I  A +  + N E 
Sbjct: 861  -TYVQDDAQTVEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIV-ANIRRMMNGEE 918

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
             ++      + P F       +  E  +E  R+    ++V  +  +E+V   +  + +TE
Sbjct: 919  PVD------MTPWF-------KGWEGDLE--RISPEKYKVLGK--IEQVDDDT--VEITE 959

Query: 273  IPYQVQKSRLIEKIAELIIA---KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL---LM 326
            IP +         + E ++A      P ++D+ ++   ++R V+      +D  L   L+
Sbjct: 960  IPIKT----WTNSVKEFLLAGLGNDKPWIKDMEEQHGINIRFVVRLLKEEMDKSLRMGLL 1015

Query: 327  ESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            E   ++S +      NM      GR+ +    + ILK++   R E+  RR
Sbjct: 1016 ERFKLISSISLS---NMVAFDPQGRIKKYSSANEILKDYYWARLELYQRR 1062


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 104/208 (50%), Gaps = 10/208 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L    
Sbjct: 652 TTVDHSIKKLRYSDFINKELIQFSIYDT-ERSIPSVIDGFKPGQRKVLFGCFKRNLKNEC 710

Query: 71  AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDS 125
              K A++ G +     + HG+ S+  +++ +AQ +V      L+   G FG+    G  
Sbjct: 711 ---KVAQLTGYIAEHSAYHHGENSLQQTIINMAQDYVGSNNINLLLPCGQFGSRKEGGKD 767

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY   +++ +   I    D+  +D+++  + +  EP  +    P +L NG  GI  
Sbjct: 768 AAAARYIFTKLSPLTRYIFLQEDDPILDYQND-DGQIIEPYYYLPIIPMVLVNGAEGIGT 826

Query: 186 GMATSIPSHNVQEICEAALALIDNPEIS 213
           G +T IPS+N  +I +  +  +DN +++
Sbjct: 827 GFSTFIPSYNPIDIIDNIVNFLDNKDMN 854


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 184/430 (42%), Gaps = 48/430 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       K 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL---KDEMKV 694

Query: 76   ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYR 130
            A++   V  K  + HG+ S+ D++V+LA  +       L+   G FG   + G  A+  R
Sbjct: 695  AQLAAYVADKSAYHHGEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y   ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  
Sbjct: 755  YIFTKLTKEARKIFDPRDDPILNYLDD-DGRSIEPDFYMPTIPMVLVNGTEGIGTGFSCY 813

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG- 249
            +P  N ++I E           +I++ LE   G  F          + +   +R  +G  
Sbjct: 814  VPPFNPKDIKE-----------NIQRALE---GHSF----------KDMSPWFRGFKGKI 849

Query: 250  FRVRARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+    W  E V R +   + VTE+P         E +  LI  K I    +  + + ED
Sbjct: 850  FKEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDILIEKKVISGFTN--NSTTED 907

Query: 309  VRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            V   ++    + +  DL +   F  S+M    P+       G      P + ILK+++  
Sbjct: 908  VDFEIMGYTGKDILKDLKLRKSFHTSNMHLFHPVK------GIYKYSSP-EEILKDFVDL 960

Query: 368  RREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            R E   RR    ++ ++ R ++   K   +  +   +I+   R +D  +  +   F    
Sbjct: 961  RLEHYKRRREHLIKVLEVRSKMCGYKSKFVTMVIEGQIVVFKRKKDDLERQLAGIFPKIN 1020

Query: 426  NQVDAILNLR 435
               D +LN++
Sbjct: 1021 GTYDYLLNIK 1030


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 61/372 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++AM      F    +K A++V   G V G   + HG+ S+  
Sbjct: 805  RSIPSVVDGLKPGQRKVLYAM------FKRNVRKDAKVVELGGYVSGMTGYQHGEVSLQQ 858

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G   A+ RY   R++  A  I    D+  +
Sbjct: 859  TIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFSTADDPLL 918

Query: 153  DFRDTYNEEDSEPVVFPSKFPNLLA---NGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 +N +D + +      P +     NG  GI  G +TSIP+ N ++I +    L+D 
Sbjct: 919  ----KHNVDDGKIIEPEVFVPVVPLVLINGADGIGTGWSTSIPNFNPEDIVDNLKRLMDG 974

Query: 210  -PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
             P + ++       G                     +   G R +    +++   G + +
Sbjct: 975  EPVVPMKPWFRGFTG--------------------EVTAAGDRYKFSGIIKQT--GDYEV 1012

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPKNRSLDPDLLM 326
             +TE+P +       +K+ E+I A++ P  ++D +D  +   V  ++      +D   + 
Sbjct: 1013 EITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTHSKVHFII-----QMDEKHMK 1067

Query: 327  ESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +++     +E RF L+  + +         GR+ +    + IL+ + A R     +R  F
Sbjct: 1068 KAV--EDGLEERFKLSRTITTSNMVAFDAEGRITKYNTAEDILEAFFAVRIRFYEKRKQF 1125

Query: 379  RMQAIDRRVEIL 390
             +  + + +E L
Sbjct: 1126 MLAQLHKELEKL 1137


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 45/276 (16%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIG-KLHPHGDQSVYD 96
            R+IP + DG KP  R++++ M      F    +K  ++V   G V G   + HGD S++ 
Sbjct: 802  RSIPSVIDGLKPGQRKVLYTM------FKRNVRKDIKVVELAGYVSGMTAYQHGDNSLHT 855

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +    DE  +
Sbjct: 856  TIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLL 915

Query: 153  DFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
                  N  D   V+ P  +    P +L NG  GI  G +TSIP++N +++      L+ 
Sbjct: 916  -----VNNTDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMA 970

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
              E+   K       P F   G   E   S          G R +    +++ G     +
Sbjct: 971  GEELVPMK-------PWF--RGFKGEVTGS----------GDRYKFSGIIKQTGDNE--V 1009

Query: 269  VVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
             +TE+P +       +++ E+I A ++P  ++D +D
Sbjct: 1010 EITELPIRTWTQDFKDRLEEIIKADKVPSFIKDYKD 1045


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A   +I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRGMIN 851


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1236

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HSSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G   AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IP+ +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPAFHPLDVSAAVRAMIN 851


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 21/176 (11%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMG-------LDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           R IP L D  KP  R+I+    E G       L   AA + + +  GE +G         
Sbjct: 50  RQIPQLIDSLKPSQRKILFTALEYGKEEIVDRLGMFAAARTNYKSGGENMG--------- 100

Query: 94  VYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
             +++V +AQ F      P     G FG+I G  A++ RY    ++ V   I +  DE  
Sbjct: 101 --NTIVNMAQAFPGTNNIPYFDRDGQFGSIMGRDASSARYISVSVSDVIRKIFRKEDEGI 158

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +D+ +   EE  EP  F    P  L NG +GI  G +T  P H V+ +  A  AL+
Sbjct: 159 LDY-NYLGEEQLEPKFFLPVIPMFLVNGINGIGSGYSTDTPCHCVKSVLSALRALL 213


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++   L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IPS +  ++  A  A+I+
Sbjct: 799 MD---EEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMIN 851


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+I++   +  L       + A  V +V    + HG+QS+  +++ 
Sbjct: 769 RSIPSMLDGLKPGQRKILYGCFKRKLKNEIKVAQLAAYVADVSS--YHHGEQSLVQTIIA 826

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG+    G  AAA RY    + ++   I    D+  +++  
Sbjct: 827 MAQNFVGSNNINLLKPNGAFGSRATGGKDAAAARYIFTELNEITRTIFNEADDPLLNYLQ 886

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +E   EP  +    P +L NG  GI  G +T+IPS+N  +I 
Sbjct: 887 D-DESTVEPQWYLPVLPMILVNGADGIGTGWSTNIPSYNPLDIV 929


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 21/180 (11%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSV 94
           +R+IP + DG KP  R+I+ +       F   F K A+ V +  G +     + HG+QS+
Sbjct: 662 QRSIPSMVDGLKPGQRKILFS------SFKRNFVKEAK-VAQFSGYVSEHSAYHHGEQSL 714

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             +++ +AQ FV      L+   G FG  N+ G   A+ RY   R++ +   +    D+ 
Sbjct: 715 ASTIIGMAQDFVGSNNINLLQPNGQFGTRNLGGKDHASARYIYTRLSPITRFLFSKDDDR 774

Query: 151 AVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +D+    NE+    EP  +    P +L NG+ GI  G ++ IP++N ++I      L+D
Sbjct: 775 LLDY---LNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLD 831


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 154/374 (41%), Gaps = 63/374 (16%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 742  ERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 798

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 799  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 858

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--- 209
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I       ID    
Sbjct: 859  ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEPL 915

Query: 210  -PEISIEKLLEYIIGPD----FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
             P +   K  +  I P+    + T GII +  +  +E                       
Sbjct: 916  VPMVPWYKDFKGRIEPNGKSGYETIGIINKIDDETLE----------------------- 952

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323
                 +TE+P +       E + EL+  ++  L+ D  D S+ EDV   +      +DP 
Sbjct: 953  -----ITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTI-----KMDPI 1002

Query: 324  LL-------MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             L       +E +F L    T   + +    +        LD ILK++  HR      R 
Sbjct: 1003 KLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYASELD-ILKDFCFHRLNAYTDRK 1061

Query: 377  SFRMQAIDRRVEIL 390
            ++ +  +++   I+
Sbjct: 1062 NYLISKLEKEKRII 1075


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 47


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 49/273 (17%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYD 96
            R+IP + DG KP  R++++        F    KK  ++V   G V G   + HG+ S+  
Sbjct: 820  RSIPSVIDGLKPGQRKVLYTC------FRRNIKKDVKVVELAGSVSGSTDYAHGEASMQG 873

Query: 97   SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
            ++V LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I  G D+  +
Sbjct: 874  TIVNLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFHGHDDALL 933

Query: 153  DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
                 Y E D    EP +F    P +L NG+SGI  G ++ IP+ N  +I          
Sbjct: 934  ----KYGESDGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDII--------- 980

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF------RVRARWCVEEVGR 263
               +I + +E          G   +    ++  Y+   G        R +    V + G 
Sbjct: 981  --ANIRRRME---------PGATKDDMTPMIPWYKGFTGTTTEIGPDRYQFTGTVRQTGD 1029

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                + +TE+P +       EK+ E+I A++ P
Sbjct: 1030 NE--VEITELPVRYWTQDFKEKLEEIIKAEKAP 1060


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 172/390 (44%), Gaps = 59/390 (15%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++         F  A
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTC------FKRA 791

Query: 72   FKKSARI--VGEVIGKL--HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
             KK  ++  +   +G++  + HG+QS+  ++V LAQ +V      L+   G FG     G
Sbjct: 792  DKKEVKVAQLAGAVGEMSAYHHGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGG 851

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY   ++  V + +   VD++ + F    N+   EP  +    P +L NG  GI
Sbjct: 852  KDSASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQR-IEPEWYCPIIPTVLVNGAEGI 910

Query: 184  AVGMATSIPSHNVQEICEAALALI--DNPEISIEKL------LEYIIGPDFPTGGIIVES 235
                +T +P++N +EI +    LI  ++P+  +         +E +    F   G I   
Sbjct: 911  GTAWSTKVPNYNPREIVDNIRRLIRGEDPKPMVPWFKNFRGTIEQLDDQRFACSGEIAIL 970

Query: 236  RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--- 292
            R+  +E                            +TE+P +V      E + E ++    
Sbjct: 971  RDDTLE----------------------------ITELPIRVWTQNYKESVLEPLLEGSD 1002

Query: 293  KRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMG 349
            K+  L++D ++   +  VR V+    + L  D  ME +  +  ++T    +  VL  + G
Sbjct: 1003 KQPALIQDFKEYHTDTTVRFVIKMSAQKLR-DAEMEGLHKVFKLQTAINTSSMVLFDAAG 1061

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             + +   ++ I KE+   R++    R +F+
Sbjct: 1062 CLRKFRNVEEICKEFFETRKKKYIERKAFQ 1091


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 43/286 (15%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R++++   +  L         A  V +     + HG+Q++  +++ 
Sbjct: 688 RSIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVANLAPAVSDYTA--YHHGEQALVQTIIG 745

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV       +   G FG     G  AAA RY    + ++A  +    D+    FR 
Sbjct: 746 MAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYIYTELNKIARKVFHPADDPL--FR- 802

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            Y +ED    EP  +    P +L NG  GI  G +TSIP  N  ++      L+++ E+ 
Sbjct: 803 -YVQEDEKTVEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLNDEEMD 861

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWCIVVTE 272
                   + P F      +E  ES  + YR+ GR          +E+VG  +  + +TE
Sbjct: 862 -------DMHPWFRGWTGTMEKIES--QRYRMYGR----------IEQVGPNT--LEITE 900

Query: 273 IPYQVQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVL 313
           +P +   S + E    L++      K  P ++D+ ++ AE ++ ++
Sbjct: 901 LPARTWTSTIKE---HLLLGLGGSEKVKPWIKDMEEQHAETIKFII 943


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 184/421 (43%), Gaps = 91/421 (21%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R++++A  +  L       + A  V +V    + HG+ S+  ++V 
Sbjct: 831  RSIPSVIDGLKPGQRKVMYACFKRNLTNDMKVVELAGYVSQVSA--YHHGEASMQMTIVG 888

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV       +   GNFG+    G  AA+ RY   R++  A  +   +D+  ++   
Sbjct: 889  LAQNFVGSNNVNCLEPSGNFGSRLQGGSDAASARYIFTRLSPFARRVYSALDDPVLE--- 945

Query: 157  TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC---EAALALIDNP 210
             YN +D    EPV +    P +L NG  GI  G +T+IP+++  EI    +  +  +D+ 
Sbjct: 946  -YNVDDGRSIEPVTYFPVVPMVLINGADGIGTGWSTNIPNYHPVEIVNNLKRRMGRLDDS 1004

Query: 211  --EISIEKLLEYI---------IGPD-FPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
              E   E ++ +           GPD +   GII E+ ++ VE                 
Sbjct: 1005 GEEKPFETMMPWFRGWKGTAEPAGPDRYKFNGIIRETGDTEVE----------------- 1047

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPK 316
                       +TE+P ++       K+ E+I A+++P  ++D ++    + V +++   
Sbjct: 1048 -----------ITELPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKEFNDHKTVHMII--- 1093

Query: 317  NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHR 368
               +D D  M++  ++  +  +F LN  V +         G++ +   ++ IL+E+   R
Sbjct: 1094 --QMD-DKHMKAA-LVEGLAEKFKLNKTVATSNLVAFDHRGQIRKYEKVEDILEEFYEQR 1149

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE----IIAIIRNE----DKPKPVMVSR 420
                     F+M  + R+   +  L + Y  +      +  II N+     K KPV+V+ 
Sbjct: 1150 ---------FKMYTV-RKAYWVNKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLVAE 1199

Query: 421  F 421
             
Sbjct: 1200 L 1200


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DGFKP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 745 ERSIPSLVDGFKPGQRKVLFTCCKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 802

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 803 NLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPAVDDNLLKFL 862

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  IP+++ +EI      ++D
Sbjct: 863 YDDNQR-VEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDTREIVNNVRRMLD 914


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 184/430 (42%), Gaps = 48/430 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       K 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL---KDEMKV 694

Query: 76   ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYR 130
            A++   V  K  + HG+ S+ D++V+LA  ++      L+   G FG   + G  A+  R
Sbjct: 695  AQLAAYVADKSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y   ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG- 249
            +P  N ++I E           +I++ LE   G DF          + +   +R  +G  
Sbjct: 814  VPPFNPKDIKE-----------NIQRSLE---GHDF----------KEMKPWFRGFKGKV 849

Query: 250  FRVRARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+    W  E V R +   + VTE+P         E +  L+  K I    +  + + ED
Sbjct: 850  FKEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLVEKKVISGFTN--NSTTED 907

Query: 309  VRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            V   ++    + +  DL M   F  S+M    P      + G      P + ILK+++  
Sbjct: 908  VDFEIMGYTGKDVLKDLKMRKSFHTSNMHLFHP------TKGIYKYSSP-EEILKDFVDL 960

Query: 368  RREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            R +   +R    ++ +  +  +   K   +  +   +I+   R +D  +  +   F    
Sbjct: 961  RLDHYKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIG 1020

Query: 426  NQVDAILNLR 435
               D +LN++
Sbjct: 1021 GTYDYLLNIK 1030


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP+L DG KP  R+++    +          K A++ G V     + HG+ S+  +++
Sbjct: 711 RSIPNLMDGLKPGQRKVLFTCLKRN---DKREVKVAQLAGSVAEHSAYHHGETSLMATII 767

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A  I    D DA+  R
Sbjct: 768 NLAQNFVGSNNINLLQPIGQFGTRLAGGKDAASPRYIFTMLSPLARYIFHKHD-DAL-LR 825

Query: 156 DTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID------ 208
             Y++    EPV +    P +L NG  GI  G  T IP++N +EI E    ++D      
Sbjct: 826 HEYDDNQKIEPVFYTPVIPMVLVNGADGIGTGWMTKIPNYNPREIIENLHRMMDGADPKP 885

Query: 209 ------NPEISIEKLLEY---------IIGPD------FPTGGIIVESRESIVE 241
                 N + S+E   EY         +IGPD       P G      +E+++E
Sbjct: 886 MIPYYKNFKGSVESCGEYRYVISGEISVIGPDKVEITELPIGTWTQTYKETVLE 939


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 50/71 (70%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 2   IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 142 LILQGVDEDAV 152
            +L  +++  V
Sbjct: 62  YLLADIEKKTV 72


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 50/71 (70%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 142 LILQGVDEDAV 152
            +L  +++  V
Sbjct: 62  YLLADIEKKTV 72


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 155/366 (42%), Gaps = 47/366 (12%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 747  ERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 803

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 804  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 863

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I             
Sbjct: 864  ---LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDI------------- 907

Query: 213  SIEKLLEYIIG-PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWC 267
             IE +  YI   P  P           ++  Y+  +G      +   E +G         
Sbjct: 908  -IENIKRYINKEPLLP-----------MIPWYKDFKGRIESNGKTGYETIGIIHKIDDET 955

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV--RIVLFPKNRSLDPDL 324
            + + E+P +       E + EL+  ++  L+ D  D S+ ED+   I + P       + 
Sbjct: 956  LEINELPIKKWTQDYKEFLEELLTDEKHQLIVDYIDNSSHEDICFTIKMDPAKMKKAEEE 1015

Query: 325  LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
             +E +F L    T   + +   ++        LD ILK++  HR +    R S+ +  ++
Sbjct: 1016 GLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELD-ILKDFCFHRLKAYENRKSYLISKLE 1074

Query: 385  RRVEIL 390
            +  +I+
Sbjct: 1075 KEKKII 1080


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1218

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 14/209 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T ++ +V  +SL   +    + ++++    R+IP   DGFKP  R+I+ A  +  L    
Sbjct: 729 TYMDHSVTEISLPDFINRELILFSMAD-NARSIPSSVDGFKPGQRKILFACFKRNLKSEI 787

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL--ISGQGNFGN--IDGDSA 126
              + A  V E     + HG+QS+  ++V +AQ F+    L  +   G FG     G  A
Sbjct: 788 KVAQLAGYVAE--HSAYHHGEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQGGKDA 845

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGI 183
           A+ RY    +T +A  +    D+  +    TY  +D    EP  +    P LL NG  GI
Sbjct: 846 ASPRYIFTNLTPLARTVFHPSDDPLL----TYLVDDGQNIEPEWYLPVLPMLLVNGADGI 901

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEI 212
             G ++SIP++N ++I E    L+ + E+
Sbjct: 902 GTGWSSSIPNYNPRDIVECLHRLMRHEEL 930


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1239

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+I+ AM        +   K A++ G +      H HG+ S+ +++
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLRR---HSSEASKVAQLSGYISEASAFH-HGEVSLQETI 738

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V++AQ F       L+  +G FG+    G+  AA RY   ++++ A L+    D+  +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            D   EE +  EP  +    P LL NG  GI  G AT+IP  +  ++  A  A+I+
Sbjct: 799 MD---EEGTPVEPHHYVPILPMLLCNGAVGIGFGFATTIPPFHPLDVSAAVRAMIN 851


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA R
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 58


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 42/61 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 N 120
           +
Sbjct: 61  S 61


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLV 51


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 184/430 (42%), Gaps = 48/430 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       K 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNL---KDEMKV 694

Query: 76   ARIVGEVIGK-LHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYR 130
            A++   V  K  + HG+ S+ D++V+LA  ++      L+   G FG   + G  A+  R
Sbjct: 695  AQLAAYVADKSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            Y   ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG- 249
            +P  N ++I E           +I++ LE   G DF          + +   +R  +G  
Sbjct: 814  VPPFNPKDIKE-----------NIQRSLE---GHDF----------KEMKPWFRGFKGKV 849

Query: 250  FRVRARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+    W  E V R +   + VTE+P         E +  L+  K I    +  + + ED
Sbjct: 850  FKEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISGFTN--NSTTED 907

Query: 309  VRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            V   ++    + +  DL M   F  S+M    P      + G      P + ILK+++  
Sbjct: 908  VDFEIMGYTGKDVLKDLKMRKSFHTSNMHLFHP------TKGIYKYSSP-EEILKDFVDL 960

Query: 368  RREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            R +   +R    ++ +  +  +   K   +  +   +I+   R +D  +  +   F    
Sbjct: 961  RLDHYKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIG 1020

Query: 426  NQVDAILNLR 435
               D +LN++
Sbjct: 1021 GTYDYLLNIK 1030


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 137/305 (44%), Gaps = 46/305 (15%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +LV++    +S +  ++ + + + +  +K R+IP L DG KP  R+I+  +  + +D   
Sbjct: 687 SLVDDGKTELSYKEFIDGQLMQFGMVDLK-RSIPSLIDGLKPSQRKILWTL--LNMDEST 743

Query: 71  AFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDS 125
             K S ++ G V  +  + HG++S+  +++R+ Q F      PL+   G FG  +  G+ 
Sbjct: 744 EMKVS-QLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGND 802

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED--SEPVVFPSKFPNLLANGTSGI 183
           AA+ RY    +     L+    D+D  + R    EE    EP       P +L NGT GI
Sbjct: 803 AASARYIFTSLASTTRLLFPHADDDLYEKRI---EEGLVVEPRWLCPIIPLILVNGTEGI 859

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIE---------KLLEYIIGPDFPTGGIIVE 234
             G +T I + N  ++ +     ID+ E   E           +E +    F T G I  
Sbjct: 860 GTGWSTKIVNRNAIDVIDGIRRKIDSVEGEHEIQPYYEDYRGKIEAVTSKKFITTGKIHL 919

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           SR                      E     ++ I ++E+P ++  S+  EK+++++  + 
Sbjct: 920 SRP---------------------ERKNASTFSIEISELPIEIWTSKYKEKLSKIV--EN 956

Query: 295 IPLLE 299
           +P++E
Sbjct: 957 LPIVE 961


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|175941427|gb|ACB72668.1| GyrA [Streptomyces sp. Fd 004]
          Length = 173

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 11/175 (6%)

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++  
Sbjct: 1   WVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGL 60

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+ 
Sbjct: 61  LEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILVSPERQRQIVSEELA 120

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
            + E F        RR+        D     + +I +E I V IS  G+++  K+
Sbjct: 121 AIVEKFGDD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKT 167


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+++   EN+   +    + E  + ++   I+ R++P+  DG KP  R++++ + +    
Sbjct: 135 NTDSRKRENLNQRTYSEFINEELIDFSRLDIR-RSVPNAIDGLKPSQRKVLYTLMQ---- 189

Query: 68  FGAAFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN 120
               F+KS   V ++ G +     + HG++ + +++VRLAQ FV      L+   G FG 
Sbjct: 190 ---RFEKSEVRVVQLAGAVAHSCAYHHGEEPLINTIVRLAQDFVGSNNLNLLQPIGQFGT 246

Query: 121 --IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNL 175
             I G+  A+ RY    ++ +   I    D+  +    +Y EED+   EP  F    P +
Sbjct: 247 RLIGGEDCASARYIYTALSPLVRWIFPRADDSVL----SYIEEDNMRIEPQWFCPIIPMV 302

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           L NG  GI  G AT +  +N +++      +ID
Sbjct: 303 LVNGAEGIGTGWATKVLCYNPKQVIRNVQRMID 335


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
          Length = 1126

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 145/335 (43%), Gaps = 38/335 (11%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R+IP++ DG KP  R+I+ A  +  L       + +  V E     + HG+QS+  ++V
Sbjct: 683 DRSIPNVLDGLKPGQRKIMFACFKRNLKKDIKVAQLSAYVAE--HSAYHHGEQSLASTIV 740

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY   R+ ++   +    D+  + + 
Sbjct: 741 NLAQDFVGSNNINLLHPSGQFGTRLQGGKDAASARYIYTRLEKLTRHLFNEHDDVLLKY- 799

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
              NEE    EP  +    P +L NG  GI  G +T IP++N ++I      L++  E  
Sbjct: 800 --LNEEGQSIEPEWYLPILPTVLVNGAEGIGTGWSTFIPNYNPRDIIANLRRLLNGEE-- 855

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            + L  +  G    TG I     +S   SY +G           V + G  +  I VTE+
Sbjct: 856 QDPLHPWYRG---FTGTITEVPHKSGSRSYVVGG---------LVAQTGPNT--IEVTEL 901

Query: 274 PYQVQKSRLIEKIAELIIAK---RIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESI 329
           P +       E +  L+  +     PL+ D  +  ++ +V  V+      L P  L E +
Sbjct: 902 PVRKWTQDYKEFLETLLRPQDKDEAPLIADYHEHHSDSNVHFVV-----ELLPGKLDELL 956

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                +E +F L   V +   +  +   DGI+K +
Sbjct: 957 ATPGGLEAKFKLQAKVTTSNMM--LFQKDGIIKHY 989


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella virus
            1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 195/440 (44%), Gaps = 59/440 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DGFKP  R++++   +  L       + +  V E     + HG+ S+  ++V
Sbjct: 650  ERSIPSVVDGFKPSQRKVLYCAFKRNLTSDVKVAQFSGYVAE--HSAYHHGEVSLQGTIV 707

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ +V       +  +G FG+    G   A+ RY   ++      +    D++ + + 
Sbjct: 708  NLAQDYVGSNNINWLLPEGQFGSRLQGGKDHASARYIFTKLNPKTRQVFVDTDDNLLKY- 766

Query: 156  DTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
              Y++ D  EP  +    P++L NG+SGI  G +T+IPS+N ++I +    L     IS 
Sbjct: 767  -LYDDGDKIEPECYVPIIPSILVNGSSGIGTGSSTNIPSYNPKDIVDNVKRL-----ISG 820

Query: 215  EKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            E L+E  + P +    G I+E+   +     + +G +    +            IVV+E+
Sbjct: 821  EDLVE--MKPWYKGFKGKIMETSPGVY----VTKGLYMPNGK-----------TIVVSEL 863

Query: 274  PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL---FPKNRSLDPDLLMESIF 330
            P         E +  L+  K I        E   D  ++    F  N ++D  L +E+  
Sbjct: 864  PVGKWTHDYKEHLDGLLEKKIISYFR----EKHSDTDVLFEIDFVGNPNIDI-LKLETTI 918

Query: 331  MLSDMETRFPLNMNVLSMGRVPQV-MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              ++M    P        G++ +   PLD I+++W   R+++  +R ++ ++ +  R  I
Sbjct: 919  RSTNMHAFDP-------SGKIKKYDTPLD-IIRDWFEVRKDLYVKRKAYLLEDLTHRTNI 970

Query: 390  L--KGLLIAYLNIDEIIAIIRNEDKPKPVMVS-RFSLTENQVDAILNLRLRSLR------ 440
               K   I  +N DEII   ++E      +    F   + + D +LN+R+ SL       
Sbjct: 971  AQNKHRFITMVNNDEIIINKKHESVISAELEKLNFYKVDGKYDYLLNMRISSLTLERATE 1030

Query: 441  -KLEEYQIKSELDNLLAEKE 459
             + E  ++  ELD+L    E
Sbjct: 1031 LEREAVKLNKELDDLSKTTE 1050


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I +RAIP + DG KPV RRI+H +  M  D G    K A + G+ +   HPHGD  + ++
Sbjct: 5   ILDRAIPHVIDGLKPVQRRILHTLWSM--DDG-KLHKVANVAGQTMA-YHPHGDAPITEA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
           LV +A     R  L+  QGNFGNI  GD AAA RY E
Sbjct: 61  LVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 57/97 (58%), Gaps = 9/97 (9%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I +RAIP + DG KPV RRI+H +  M  D G    K A + G+ +   HPHGD  + ++
Sbjct: 5   ILDRAIPHVIDGLKPVQRRILHTLWSM--DDG-KLHKVANVAGQTMA-YHPHGDAPITEA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
           LV +A     R  L+  QGNFGNI  GD AAA RY E
Sbjct: 61  LVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 46/58 (79%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           G+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E
Sbjct: 1   GQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSE 58


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R+++    +  L      +K   + G V  +  + HG+QS+  ++V
Sbjct: 812 RSIPSMVDGLKPGQRKVLFGCFKQNLIHD---QKVVELAGYVSKEAAYHHGEQSLQQTIV 868

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV       +   GNFG+    G  AA+ RY   R++ +A  I   +DE  ++F+
Sbjct: 869 GLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQ 928

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
                +D    EP V+    P +L NG  GI  G +TSIP+++  +I E
Sbjct: 929 ----FDDGKLIEPKVYAPILPMVLVNGADGIGTGWSTSIPNYHPLDIVE 973


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DGFKP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 652 ERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 709

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 710 NLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFL 769

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 770 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 821


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 50/71 (70%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 2   IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 142 LILQGVDEDAV 152
            +L  +++  V
Sbjct: 62  YLLADIEKKTV 72


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           G+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E
Sbjct: 1   GQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSE 58


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 202/491 (41%), Gaps = 92/491 (18%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
            R+I  + DGFKP  R+++         F   F  S R V +++G +     + HG+ S+ 
Sbjct: 783  RSIASVCDGFKPGQRKVLFG------SFKRKFTVSIR-VAQLVGYISEHTGYHHGEASLG 835

Query: 96   DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
             +++ +AQ F       L+   G FG+    G  AAA RY +  +  + + I    DE  
Sbjct: 836  STIMAMAQDFAGSNNIYLMKPDGGFGSRSQGGKDAAAMRYAQTELMDITKAIFNKQDEPL 895

Query: 152  VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             ++  T ++   EP  +    P LL NG  GI  G +TSIP +N        L ++DN  
Sbjct: 896  YNYV-TDDDTPVEPEYYLPVLPMLLVNGCEGIGSGWSTSIPPYN-------PLDIVDN-- 945

Query: 212  ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
              + ++L+     D P   +I   R    E   +G G ++V+    +E+V   + CI  T
Sbjct: 946  --LRRMLK-----DEPPVPMIPWFRGWHGEVEPVGDGRYKVKG--LIEQVDERTLCI--T 994

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIP--LLEDIRDESAEDVRIVLFPKNRSLDPDL---LM 326
            E+P ++    + E +   +I  +     +ED  ++    V+  +    + ++      L 
Sbjct: 995  ELPARMWTISMKEFLLSSLIDSKNEKGWIEDFTEDHGFRVKFNITLSEKEMEKTRQIGLR 1054

Query: 327  ESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR-----SSFRM 380
            E   ++S + T    NM      GR+ +    + I+KE+   R E   +R     S F  
Sbjct: 1055 ERFKLISSLSTS---NMVAFDPEGRIKKYDSPEAIMKEYFPVRLEFYQKRKDRLVSDFEQ 1111

Query: 381  Q-------------AIDRRVEIL---KGLLIAYLN---------------IDEIIAIIRN 409
            Q              ID+++ I    + +LIA L+                D   AI  +
Sbjct: 1112 QLEKLTAQARFIKLIIDKKLNINNKGRKVLIAELSELKFPRYGKNGERLASDAKAAIAED 1171

Query: 410  EDKPKPVMVSRFSLTE--------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            E+ P   +    +  E        N  D +L + L SL K    ++  E D    E+E I
Sbjct: 1172 EEAPSDEVAEDLAEAEEIHGKIPTNGYDYLLGMALWSLTKERYEKLLRERDG--KEEELI 1229

Query: 462  DSLLNSGKQQW 472
            + L  S K  W
Sbjct: 1230 ELLKKSAKDIW 1240


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DGFKP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 585 ERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 642

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 643 NLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFL 702

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 703 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 754


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 154/371 (41%), Gaps = 57/371 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSL 98
            ER+IP++ DG+KP  R++++   +  L       K A++VG +     + HG+ S+  ++
Sbjct: 736  ERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC---KVAQLVGYIAEHSAYHHGESSLQQTI 792

Query: 99   VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ FV       +   G FG+    G  A+A RY   ++      I    D+  + +
Sbjct: 793  INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASCTRSIFNEYDDPILKY 852

Query: 155  RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
                NEE    EP  +    P +L NG  GI  G ++ IP++N ++I             
Sbjct: 853  ---LNEEGQKIEPKYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDI------------- 896

Query: 213  SIEKLLEYIIG-PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG----RGSWC 267
             IE +  YI   P  P           ++  Y+  +G      +   E +G         
Sbjct: 897  -IENIKRYINKEPLIP-----------MIPWYKDFKGRIESNGKTGFETIGIIRKIDDET 944

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLL- 325
            + + E+P +       E + EL+  ++  L+ D  D S+ E++   +      +DP  L 
Sbjct: 945  LEINELPIKKWTQDYKEFLEELLTDEKNQLILDYIDNSSHEEICFTI-----KMDPAKLR 999

Query: 326  ------MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                  +E +F L    T   + +   ++        LD ILKE+   R      R S+ 
Sbjct: 1000 KAEEEGLEKVFKLKSTLTTTNMTLFDYNLKLQKYATELD-ILKEFCFQRLNAYENRKSYL 1058

Query: 380  MQAIDRRVEIL 390
            +  +++  +I+
Sbjct: 1059 IAKLEKEKKII 1069


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  II   R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRG 59

Query: 249 GFRVRAR 255
              +RAR
Sbjct: 60  KVYIRAR 66


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 182/378 (48%), Gaps = 30/378 (7%)

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +  NM  ++  R P++M +  +L  ++ H++E++ +RS + ++    R  IL+GL+ A  
Sbjct: 2   YNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALS 60

Query: 399 NIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            +DE+I +IR ++DK   K  + +++  +E Q +AI++L+L  L   + ++++SE  +L 
Sbjct: 61  ILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLA 120

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   ++ +L    +    +  E+ E+K    K     RR     E++     T  + ++
Sbjct: 121 EQISVLEKILGDEAELIAVLKEELAEIK----KKYKTARRTEVQAEITEIKIDT--EVLV 174

Query: 516 EKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             E + V ++  G+++  S +S++    A L  KE D        ++ D +LL ++ G  
Sbjct: 175 ANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNF 234

Query: 573 YTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIV 626
              P   L  +  +  G+ +  L  DL+  ++I +A     +    + L V+  G    +
Sbjct: 235 IYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNG----M 290

Query: 627 EESEIIANTR-----KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
            +   I N +     K    +K+  ++++  V  + G + + +  +N   L +SI +IPE
Sbjct: 291 TKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPE 350

Query: 681 M-SRGKGVRLQSYKDGGI 697
             +R  GV+  + K   I
Sbjct: 351 SGARTAGVKAINLKQDDI 368


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 63/392 (16%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++         F  A
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTC------FKRA 791

Query: 72   FKKSARI------VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
             KK  ++      VGE+    + HG+QS+  ++V LAQ +V      L+   G FG    
Sbjct: 792  DKKEVKVAQLAGAVGEMSA--YHHGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQ 849

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++  V + +   VD++ + F    N+   EP  +    P +L NG  
Sbjct: 850  GGKDSASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQR-IEPEWYCPIIPTVLVNGAE 908

Query: 182  GIAVGMATSIPSHNVQEICEAALALI--DNPEI------SIEKLLEYIIGPDFPTGGIIV 233
            GI    +T +P++N +EI +    LI  ++P+       +    +E +    F   G I 
Sbjct: 909  GIGTAWSTKVPNYNPREIVDNIRRLIRGEDPKPMVPWFKNFRGTIEQLDDQRFACSGEIA 968

Query: 234  ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA- 292
              R+  +E                            +TE+P +V      E + E ++  
Sbjct: 969  ILRDDTLE----------------------------ITELPIRVWTQNYKESVLEPLLEG 1000

Query: 293  --KRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--S 347
              K+  L++D ++   +  VR V+    + L  D  ME +  +  ++T    +  VL  +
Sbjct: 1001 SDKQPALIQDFKEYHTDTTVRFVIKMSAQKLR-DAEMEGLHKVFKLQTAINTSSMVLFDA 1059

Query: 348  MGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             G + +   ++ I KE+   R++    R +F+
Sbjct: 1060 AGCLRKFRNVEEICKEFFETRKKKYIERKAFQ 1091


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--GKLHPHGDQSVYDSL 98
           R+IP   DG KP  R+IIH +    L+      K + + G V    + H HG+QS+  ++
Sbjct: 365 RSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLSGLVTTYAQYH-HGEQSLQQTV 419

Query: 99  VRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V +AQ F       L+   G FG  ++ G  AA  RY     T+++ L  +  +ED +  
Sbjct: 420 VAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYIS---TKLSSLTTKLFNEDDLHT 476

Query: 155 RDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +  +EE    EP  F    P +L NG  GI  G +T +P+ N +EIC+
Sbjct: 477 LNYLDEEGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQ 525


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 43/247 (17%)

Query: 27  EERYLAYALSTIKE----------RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +E+Y++Y     KE          R+IP + DG KP  R+I+         F   F K A
Sbjct: 668 KEKYISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCA------FKRNFVKEA 721

Query: 77  RIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAA 127
           + V +  G +     + HG+QS+  +++ +AQ +V      L+   G FG  N+ G   A
Sbjct: 722 K-VSQFSGYVSEHSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHA 780

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAV 185
           + RY   R++ +A  +    D+   D+    NE+    EP  +    P +L NG+ GI  
Sbjct: 781 SSRYIYTRLSPIARFLFPKEDDTIHDY---LNEDGQYIEPTWYVPIVPMVLINGSEGIGT 837

Query: 186 GMATSIPSHNVQEICEAALALIDNPEI------------SIEKLLEYIIGPDFPTGGIIV 233
           G ++ +P++N +++      L+++  +            +IEK      G  +   GII 
Sbjct: 838 GWSSYVPNYNPRDLVANVRRLLNDEPMEPMDPWYKGFKGTIEKTATKEAGATYTVTGIIE 897

Query: 234 ESRESIV 240
           E  E+ +
Sbjct: 898 EVNETTL 904


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
           saltans]
          Length = 1247

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 140/306 (45%), Gaps = 33/306 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RA+P   DG KP  R+I+ +    G +   + K S ++ G +  +   H HG+ S+  ++
Sbjct: 693 RALPSAVDGLKPSQRKILWSCFRRG-NANESLKVS-QLSGYISEVSAFH-HGEMSLQQTI 749

Query: 99  VRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           +++AQ +V      L+  +G FG+    G   AA RY   +++ +A LI    D++ + F
Sbjct: 750 IKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAAARYIFTKLSPLARLIFPKEDDELLQF 809

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEI 212
            +   +   EP  +    P LL NG+ GI  G A ++  H+  ++      ++  + P  
Sbjct: 810 VEDEGKY-VEPRFYVPIIPMLLVNGSVGIGFGFACTVQMHHPLDVVTVVRRMMRKNTPTQ 868

Query: 213 SIEKLLEYIIGPDFPTGGIIV------ESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           ++E L  + +G    +G ++       E RE +V +  +  G F  R         +G  
Sbjct: 869 ALEGLRPWAVG---YSGSVVQKTTVDEEGRE-VVSTTHVAMGRFTTRKV-------KGFP 917

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL----FPKNRSLDP 322
            + V E+P+     +L  ++A+L    ++  + D    +  D  +VL    F   R ++ 
Sbjct: 918 VVRVEELPWDRAIEQLRGRVAKLAEESKVLRIADYSGANHVDSDVVLAADSFASPREIEK 977

Query: 323 DLLMES 328
           D L+ S
Sbjct: 978 DFLLTS 983


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 40/47 (85%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS VR+AQPF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPF 47


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP+L DG KP  R+++ A  +  L+      + A  V E     + HG+ S+  ++V 
Sbjct: 830 RSIPNLLDGLKPGQRKVLFATFKKKLNNELKVAQLAGYVAE--HSAYHHGESSLQSTIVN 887

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG+    G  A+A RY   ++++    I    D+  +    
Sbjct: 888 MAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLL---- 943

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           TY  +D    EP+ +    P +L NGT GI  G ++S+P++N ++I
Sbjct: 944 TYLYDDGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDI 989


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 158/370 (42%), Gaps = 44/370 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R+++ +  +  L       + +  V E     + HG+ S+  ++V 
Sbjct: 696  RSIPSMVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSGYVSE--HSAYHHGEASLAMTIVN 753

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG     G   A+ RY   R+ +V   +    D+  +++ D
Sbjct: 754  LAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIFTRLHEVCRAMFPECDDALLNYLD 813

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE-ICEAALALIDNPEISIE 215
              + +  EP  +    P +L NG  GI  G +TSIP+ N ++ I    L L     + + 
Sbjct: 814  E-DGQRIEPDYYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDLIANIRLVLEGESPVQMH 872

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
                +  G              SI E    G   + V   + +    R    + VTE+P 
Sbjct: 873  PWYRHFKG--------------SITEELVKGETRYNVTGSYNI----RDECTLEVTELPL 914

Query: 276  QVQKSRLIEKIAELIIAKR---IPLLEDIRD---ESAEDVRIVLFPKNRSLDPDLLMESI 329
            +   S   E + E+++ K     P + D ++   +S     I + P+N +      +E  
Sbjct: 915  RSWTSDYKEFLEEMLVPKTKTAKPFITDYKEYHTDSTVHFVITMPPENLAAAQASGIEKK 974

Query: 330  FMLSDMETRFPL-NMNVLS-MGRVPQVMPLDGILKEWL-------AHRREVLFRRSSFRM 380
            F LS   T+  + NM++ +  G + +      IL+ ++       + RRE+L R +  ++
Sbjct: 975  FKLS---TKLNITNMHLFNEQGVITKYSSPVAILEAFVPLRLKAYSQRREMLIRLAESQL 1031

Query: 381  QAIDRRVEIL 390
            + +  ++  +
Sbjct: 1032 KRLSNKMRFI 1041


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  RY
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRY 52


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 43/285 (15%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           +IP + DGFKP  R++++   +  L         A  V +     + HG+Q++  +++ +
Sbjct: 689 SIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVANLAPAVSDYTA--YHHGEQALVQTIIGM 746

Query: 102 AQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AQ FV       +   G FG     G  AAA RY    + ++A  +    D+    FR  
Sbjct: 747 AQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYIYTELNKIARKVFHPADDPL--FR-- 802

Query: 158 YNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           Y +ED    EP  +    P +L NG  GI  G +TSIP  N  ++      L+++ E+  
Sbjct: 803 YVQEDEKTVEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLNDEEMD- 861

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRL-GRGGFRVRARWCVEEVGRGSWCIVVTEI 273
                  + P F      +E  ES  + YR+ GR          +E+VG  +  + +TE+
Sbjct: 862 ------DMHPWFRGWTGTMEKIES--QRYRMYGR----------IEQVGPNT--LEITEL 901

Query: 274 PYQVQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVL 313
           P +   S + E    L++      K  P ++D+ ++ AE ++ ++
Sbjct: 902 PARTWTSTIKE---HLLLGLGGSEKVKPWIKDMEEQHAETIKFII 943


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP+L DG KP  R+++ A  +  L+      + A  V E     + HG+ S+  ++V 
Sbjct: 100 RSIPNLLDGLKPGQRKVLFATFKKKLNNELKVAQLAGYVAE--HSAYHHGESSLQSTIVN 157

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG+    G  A+A RY   ++++    I    D+  +    
Sbjct: 158 MAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLL---- 213

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           TY  +D    EP+ +    P +L NGT GI  G ++S+P++N ++I
Sbjct: 214 TYLYDDGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDI 259


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP + DGFKP  R+++    +  L    +  K A+ VG V     + HG+QS+   +V
Sbjct: 706 RSIPSMVDGFKPSQRKVLFCALKRNL---KSDTKVAQFVGYVSEHSAYHHGEQSLESCIV 762

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ F       L+   G FG     G  AA+ RY   R+++    I    D+D +++ 
Sbjct: 763 GMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLSKYTRTIFHPDDDDVLEYL 822

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            T   +  EP  +    P +L NG  GI  G +T++ S++ +EI     ALI   E+
Sbjct: 823 -TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPREIIHLLRALIRGVEL 878


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 203/451 (45%), Gaps = 75/451 (16%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---KSARIVGEV--IGKLHPHGDQSV 94
            ER+IP L DGFKP  R+++ A       F  A K   K A++ G V  +   H HG+ S+
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFAC------FKRADKREVKVAQLAGAVAELSAYH-HGEVSL 797

Query: 95   YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
              +++ LAQ +V      ++   G FG     G  +A+ RY   +++ V   +    D++
Sbjct: 798  MGTIINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDN 857

Query: 151  AVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             + F   Y E    EP  +    P +L NG +GI  G +T+IP++N +E+ +        
Sbjct: 858  VLRF--LYEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVK-------- 907

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV--RARW-CVEEVG-RGS 265
               +++KL             I  E+++++   Y+  RG       +R+ C  EV     
Sbjct: 908  ---NVKKL-------------IAGEAQKALDPWYKNFRGKIIQIDPSRYACYGEVAVLDD 951

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIA---KRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
              + +TE+P +       EK+ E ++    K+ P++ D + E   D  +    K   L P
Sbjct: 952  NTVEITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYK-EYHTDTTVKFVVK---LSP 1007

Query: 323  DLLMESIFMLSDMETRFPLN--MNVLSM------GRVPQVMPLDGILKEWLAHRREVLFR 374
              L E +    D+ T F L   +N   M      G +      + I +E+   R+E   +
Sbjct: 1008 GKLAE-LERSGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQ 1066

Query: 375  RSSFR---MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            R  +    +QA  +R+      ++A +N +EII     E+K K  +V   +L + + D  
Sbjct: 1067 RKEYMVGVLQAQSKRLTNQARFILAKIN-NEIIM----ENKKKASIVE--TLIKMKFDPD 1119

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
               + +  +KL+E +   E++  L E++++D
Sbjct: 1120 PVKKWKEEQKLKELRESGEVE--LDEEDQVD 1148


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R+++    +  L      +K   + G V  +  + HG+QS+  +++
Sbjct: 799 RSIPSMVDGLKPGQRKVLFGCFKQNLIHD---QKVVELAGYVSKEAAYHHGEQSLQQTII 855

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV       +   GNFG+    G  AA+ RY   R++ +A  I   +DE  ++F+
Sbjct: 856 GLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQ 915

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
                +D    EP V+    P +L NG  GI  G +TSIP+++  +I E
Sbjct: 916 ----FDDGKLIEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVE 960


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 203/451 (45%), Gaps = 75/451 (16%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---KSARIVGEV--IGKLHPHGDQSV 94
            ER+IP L DGFKP  R+++ A       F  A K   K A++ G V  +   H HG+ S+
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFAC------FKRADKREVKVAQLAGAVAELSAYH-HGEVSL 797

Query: 95   YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
              +++ LAQ +V      ++   G FG     G  +A+ RY   +++ V   +    D++
Sbjct: 798  MGTIINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDN 857

Query: 151  AVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             + F   Y E    EP  +    P +L NG +GI  G +T+IP++N +E+ +        
Sbjct: 858  VLRF--LYEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVK-------- 907

Query: 210  PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV--RARW-CVEEVG-RGS 265
               +++KL             I  E+++++   Y+  RG       +R+ C  EV     
Sbjct: 908  ---NVKKL-------------IAGEAQKALDPWYKNFRGKIIQIDPSRYACYGEVAVLDD 951

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIA---KRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
              + +TE+P +       EK+ E ++    K+ P++ D + E   D  +    K   L P
Sbjct: 952  NTVEITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYK-EYHTDTTVKFVVK---LSP 1007

Query: 323  DLLMESIFMLSDMETRFPLN--MNVLSM------GRVPQVMPLDGILKEWLAHRREVLFR 374
              L E +    D+ T F L   +N   M      G +      + I +E+   R+E   +
Sbjct: 1008 GKLAE-LERSGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQ 1066

Query: 375  RSSFR---MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            R  +    +QA  +R+      ++A +N +EII     E+K K  +V   +L + + D  
Sbjct: 1067 RKEYMVGVLQAQSKRLTNQARFILAKIN-NEIIM----ENKKKASIVE--TLIKMKFDPD 1119

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
               + +  +KL+E +   E++  L E++++D
Sbjct: 1120 PVKKWKEEQKLKELRESGEVE--LDEEDQVD 1148


>gi|255022892|ref|ZP_05294878.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-208]
          Length = 303

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 132/262 (50%), Gaps = 13/262 (4%)

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  +F  +D++  +  NM  ++  R P++M +  +L  ++ H++E++ +RS + ++   
Sbjct: 38  VLNYLFKNTDLQVSYNFNMVAINKKR-PELMGIIPMLDAYIEHQKEIITKRSEYDIRKAR 96

Query: 385 RRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL+ A   +DE+I +IR ++DK   K  + + +  +E Q +AI++L+L  L  
Sbjct: 97  ARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSEKQAEAIVSLQLYRLTN 156

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            + ++++SE  +L  +   ++ +L    +    +  E+ E+K    K     RR     E
Sbjct: 157 TDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIK----KKYKTARRTEVQAE 212

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-LHFKEGDSLKIALHAH 558
           ++     T  + ++  E + V ++  G+++  S +S++    A L  KE D        +
Sbjct: 213 ITEIKIDT--EVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMN 270

Query: 559 TTDRILLLSTDGKAYTLPAGNL 580
           + D +LL ++ G     P   L
Sbjct: 271 SLDSLLLFTSKGNFIYRPVHEL 292


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 182/434 (41%), Gaps = 55/434 (12%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +++   + +  + ++L+ +K R+I  + DG KP  R+++++  +  L       + 
Sbjct: 636  DVKQLNITDFVHKDLVNFSLADLK-RSIAHVADGLKPSQRKVMYSCFQKNLKDEMKVAQL 694

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V E     + HG+ S+ +++V+LA  +       L+   G FG   + G  A+  RY
Sbjct: 695  AAYVAE--KSAYHHGEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTRY 752

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A  +    D+  +++ D  +    EP  +    P +L NGT GI  G +  I
Sbjct: 753  IFTKLTKEARKLFDPKDDAILNYLDD-DGRSIEPDFYMPTLPMVLVNGTEGIGTGFSCYI 811

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N  +I E           +I++ LE                 ES ++     R GF+
Sbjct: 812  PPFNPDDIKE-----------NIKRSLE----------------GESPIDMKPWFR-GFK 843

Query: 252  VR------ARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             +        W  E V R +   + VTE+P         E +  L+  K I    +  + 
Sbjct: 844  GKVFKDDVGLWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLVDKKMITSFTN--NS 901

Query: 305  SAEDVRIVLFP-KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            + EDV   +F    + L  DL +   F  ++M    P      + G      P + ILK+
Sbjct: 902  TTEDVDFEIFGYSGKDLIKDLKLRKTFHTTNMHLFHP------TKGIYKYTSP-EEILKD 954

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            ++  R E   +R +  +  +++R E+   K   ++ +    ++   R +   +  M S F
Sbjct: 955  FVELRLEHYKKRKAHLIDVLEKRAEMCGHKSKFVSMVIEGRLVVFKRKKQDLEKEMSSIF 1014

Query: 422  SLTENQVDAILNLR 435
               +   D +LN +
Sbjct: 1015 PKIDGNWDYLLNTK 1028


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 166/387 (42%), Gaps = 53/387 (13%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ +AVS +  + +  + ++ +   ER+IP L DG KP  R+++         F  A
Sbjct: 734  LYNKDTRAVSFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTC------FKRA 786

Query: 72   FKKSARI------VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
             KK  ++      VGE+    + HG+ S+  ++V LAQ +V      L+   G FG    
Sbjct: 787  DKKEVKVAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQ 844

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   ++  V   +   VDE+ + F    N+   EP  +    P +L NG  
Sbjct: 845  GGKDSASPRYIFTQLNPVTRALFPIVDENVLRFLFEENQR-IEPEWYCPIIPTVLVNGAE 903

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT-GGIIVESRESIV 240
            GI    +T IP++N +EI +    LI   E          + P F    G I    E + 
Sbjct: 904  GIGTAWSTKIPNYNPREIVDNMRRLIRGEEPK-------SLTPWFKNFRGTI----EKLD 952

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA---KRIPL 297
            +S  +  G   + +   +E          +TE+P +       E + E ++    K+ PL
Sbjct: 953  DSRYICSGEIALLSDDTIE----------ITELPIRTWTQNYKETVLEPMLEGSDKQPPL 1002

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVP 352
            ++D ++   +     +   N +   +  ME +  +  +++   ++  VL      + R P
Sbjct: 1003 IQDFKEYHTDTTVKFVVKMNAAKLREAEMEGLHKIFKLQSAINISSMVLFDPLGCLRRFP 1062

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFR 379
             V   + I KE+   R++    R +F+
Sbjct: 1063 NV---EEICKEFFEIRKKKYIERKAFQ 1086


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 157/362 (43%), Gaps = 44/362 (12%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R+IP++ DG K   R+I+++  +  L       + +  V E  G  + HG+ S+  ++V
Sbjct: 182 DRSIPNMMDGLKVSQRKILYSAFKKNLVHEIKVAQFSGYVSEHSG--YHHGENSLNGAIV 239

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      ++   G FG     G  +A+ RY    + ++  +I +  D+  +   
Sbjct: 240 NMAQNFVGSNNINILMPNGQFGTRLQGGKDSASERYIFTNLNKITRMIFKKEDDAIL--- 296

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            TY ++D    EP+ +    P +L NGT GI  G +T IP       C   + LI+  + 
Sbjct: 297 -TYLKDDGTFVEPIYYLPILPMILVNGTKGIGTGFSTDIP-------CFHPVQLINYIQ- 347

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
              KL +     DF       +  +  +E  + G   F  +  + +++       I +TE
Sbjct: 348 --HKLADKAYTRDFVP---FYQGFQGTIE--KDGDRRFITKGNYTIDKQ-----VITITE 395

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFM 331
           +P  V     I     L + K + +L+D +D+S +  V   L  K    + DL+    F 
Sbjct: 396 LPIGVWNEDYI-----LHLEKCMDILKDYKDQSTDKKVYFKLTLKQPMEESDLI--KTFK 448

Query: 332 LSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
           LS   T    NMN+     ++     +  I  +++  R +   +R    +Q +   +E+L
Sbjct: 449 LS--TTLSINNMNLFDHNDKLKHYNEVYEICDDFIGIRLDYYEKRRLHLIQILKEEMEVL 506

Query: 391 KG 392
           K 
Sbjct: 507 KN 508


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1520

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 19/178 (10%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---KSARIVGEV--IGKLHPHGDQSV 94
           ER+IP L DGFKP  R+++ A       F  A K   K A++ G V  I   H HG+QS+
Sbjct: 747 ERSIPCLVDGFKPGQRKVLFAC------FKRADKREVKVAQLAGAVAEISAYH-HGEQSL 799

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
             ++V LAQ +V      L+   G FG     G  +A+ RY   +++ V   +    D++
Sbjct: 800 MGTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDN 859

Query: 151 AVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            + F   Y E    EP  +    P +L NG  GI  G +T+IP++N +E+ +    LI
Sbjct: 860 VLRF--LYEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLI 915


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E++ +AVS    +    + Y+ +    R+IP++ DGFKP  R+++    +        
Sbjct: 675 LYEKDTRAVSFSDFINVELVLYS-NYDNVRSIPNMIDGFKPGQRKVMFTCLKRN---DRR 730

Query: 72  FKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
             K A++ G V     + HG+ S+  +++ LAQ FV      L+   G FG     G  A
Sbjct: 731 EVKVAQLAGSVAEHSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDA 790

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RY    ++ +A  I    D DA+   +  + +  EPV +    P +L NG  GI  G
Sbjct: 791 ASPRYIFTMLSPLARYIFHKHD-DALLKHEYDDNQKIEPVFYIPVIPMVLVNGADGIGTG 849

Query: 187 MATSIPSHNVQEICEAALALID 208
             T IP++N +EI E    ++D
Sbjct: 850 WMTKIPNYNPREIIENLQRMMD 871


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP++ DGFKP  R+++    +          K A++ G V     + HG+ S+  +++
Sbjct: 705 RSIPNMIDGFKPGQRKVMFTCLKRN---DKREVKVAQLAGSVAEHSAYHHGETSLMATII 761

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A  I    D DA+   
Sbjct: 762 NLAQNFVGSNNINLLQPIGQFGTRLTGGKDAASPRYIFTMLSPLARYIFHKHD-DALLKH 820

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +  + +  EPV +    P +L NG  GI  G  T IP++N +EI E    ++D
Sbjct: 821 EYDDNQKIEPVFYVPVIPMILVNGADGIGTGWMTKIPNYNPREIIENLHRMMD 873


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N  N +  ++ + K +S+   + +  + +AL+    RAI    DG KP  R+I+ A
Sbjct: 644 MTKANAFNGDVDIDRSKKVLSIPDFVHKEMVHFALAG-NARAIAHSVDGLKPSQRKILWA 702

Query: 61  MSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
           + + G    A   K A++ G +  +   H HG+ S+ +++V++AQ F       L+  +G
Sbjct: 703 LFKRG---KAESAKVAQLSGYISEVSSFH-HGEMSLQETIVKMAQNFTGGNNINLLVPEG 758

Query: 117 NFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            FG+    G+  AA RY   ++++ A ++    DE  +D+ +      +EP  +    P 
Sbjct: 759 QFGSRQQLGNDHAAPRYIFTKLSRFARVLFPEDDEPLLDYTEEEGTT-TEPNHYVPIIPM 817

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS--IEKLLEYIIG 223
           LL NG+ GI  G A++IPS++  ++     ++I+       +++L+ + +G
Sbjct: 818 LLCNGSVGIGFGFASNIPSYHPLDVSAVVRSMINGETAKQVVKRLVPWAVG 868


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 49/71 (69%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 2   IMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 142 LILQGVDEDAV 152
            +L  +++  V
Sbjct: 62  YLLADIEKKTV 72


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 41/49 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLV 51


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 637 NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSEMKVAQL 695

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRY 131
           A  V E     + HG+ S+ D++V+LA  F       L+   G FG   + G  A+  RY
Sbjct: 696 AAYVSEKTS--YHHGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRY 753

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              ++T+ A ++    D+  +++ D  + +  EP  +    P +L NGT GI  G ++ I
Sbjct: 754 IFTKLTKSARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYI 812

Query: 192 PSHNVQEI 199
           P  N  +I
Sbjct: 813 PPFNPSDI 820


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
           magnipapillata]
          Length = 1323

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 23/238 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+  + V+ +  + +  + ++ +T  ER+IP L DGFKP  R+++    +        
Sbjct: 675 LYEKGTRTVTYQDFINKELILFS-NTDNERSIPSLVDGFKPGQRKVLFTCMKRNDKREVK 733

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAA 127
             + A  V E+    + HG+ S+  ++V LAQ FV      ++   G FG  ++ G  +A
Sbjct: 734 VAQLAGSVAELSA--YHHGEMSLMGTIVNLAQNFVGSNNLNVLLPIGQFGTRHVGGKDSA 791

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           + RY    M+ +  L+    D+  + +    N++  EP  +    P  L NG  GI  G 
Sbjct: 792 SPRYIFTMMSSLTRLVFPEKDDAVLTYLFDDNQK-IEPEWYCPIIPMCLVNGAEGIGTGY 850

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP-----TGGIIVESRESIV 240
           +T IP+ ++++I E    +I+  E            P FP     TG I+ E  +  +
Sbjct: 851 STKIPNFDIRDIVENVKRMINGEEPQ----------PMFPSYKDFTGEIVQEGDQKFI 898


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
            ER+IP L DGFKP  R+++             FK       K A++ G V  +   H HG
Sbjct: 868  ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 916

Query: 91   DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
            +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 917  EQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPS 976

Query: 147  VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 977  VDDNLLKFLYDDNQR-VEPEWYMPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 1035

Query: 207  ID 208
            +D
Sbjct: 1036 LD 1037


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 7/178 (3%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++    +          + A  V E+    + HG+QS+  ++V 
Sbjct: 715 RSIPCMVDGLKPGQRKVMFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQSLCGTIVN 772

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ +V      L+   G FG     G  +A+ RY    ++ +  LI   +D+  ++++ 
Sbjct: 773 LAQNYVGSNNINLLVPSGQFGTRLAGGKDSASPRYIFTMLSPLTRLIFHPLDDPLLEYQY 832

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
             N++  EP+ +    P +L NGT GI  G +T IP+HN ++I      +++  E  I
Sbjct: 833 DDNQK-IEPLWYLPIIPMVLVNGTEGIGTGWSTKIPNHNPRDIISNLRRMLNGEEPKI 889


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137
           +V+GK HPH D + Y+++V +AQPF  RYPLI GQGN+G+ D   S AA RYTEA+++
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLS 58


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R+++ A  +  L      +K   + G V  K  + HG+ S+  +++
Sbjct: 752 RSIPSVLDGLKPGQRKVMFACFKRNL---TKDQKVVELAGYVSEKAAYHHGEMSLQQTII 808

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV       +   GNFG+    G  AA+ RY   R++  A  I   +DE  ++ +
Sbjct: 809 GLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTRLSPFARKIFSVLDEPNLEVQ 868

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
              + +  EP V+    P +L NG  GI  G +TSIP+++  EI  A
Sbjct: 869 -MEDGKPIEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRA 914


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 207/478 (43%), Gaps = 107/478 (22%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R++++A  +  L       + A  V + I   H HG+ S+  ++V 
Sbjct: 826  RSIPSVIDGLKPGQRKVMYACFKRNLINDMKVVELAGYVSQ-ISAYH-HGEASMQMTIVG 883

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV       +   GNFG+    G  +A+ RY   R++  A  +   +D+  ++   
Sbjct: 884  LAQNFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIFTRLSPFARRVYSALDDPVLE--- 940

Query: 157  TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC---EAALALIDNP 210
             YN +D    EPV +    P +L NG  GI  G +T+IP+++  E+    +  +  +D+ 
Sbjct: 941  -YNIDDGKSIEPVTYFPVVPMVLINGAEGIGTGWSTNIPNYHPVEVVNNLKRRMGRLDDS 999

Query: 211  --EISIEKLLEYI---------IGPD-FPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
              E   E ++ +           GPD +   GII E+ ++ VE                 
Sbjct: 1000 GEEKPFETMMPWFRGWKGTPEPAGPDRYKFNGIIRETGDTEVE----------------- 1042

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD-ESAEDVRIVLFPK 316
                       +TE+P ++       K+ E+I A+++P  ++D ++    ++V +++   
Sbjct: 1043 -----------ITELPIRMWTDDFKAKLEEVIKAEKVPSFIKDYKEFNDHKNVHMII--- 1088

Query: 317  NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--------GRVPQVMPLDGILKEWLAHR 368
               +D   + E+  +   +  +F LN  V +         G++ +   ++ IL+E+   R
Sbjct: 1089 --QMDDKHMKEA--LKEGLAEKFKLNKTVATSNLVAFDHRGQIRKYDKVEDILEEFYEQR 1144

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE----IIAIIRNE----DKPKPVMVSR 420
                      +M  + R+   +K L + Y  +      +  II N+     K KPV+V+ 
Sbjct: 1145 ---------LKMYTV-RKAHWMKKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLVAE 1194

Query: 421  FSLTENQVDAILNLRLRSLR---KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
                         LR R      K+ + +   E D+++  +E++ +  ++G + ++ +
Sbjct: 1195 -------------LRKRGYEGFPKITDAKKAGEADDVVENEEEVTADEDAGARDYDYL 1239


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP L DGFKP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 1036 ERSIPSLVDGFKPGQRKVLFTCCKRNDRREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 1093

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 1094 NLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFL 1153

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 1154 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 1205


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 2   FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|332215374|ref|XP_003256818.1| PREDICTED: DNA topoisomerase 2-beta-like [Nomascus leucogenys]
          Length = 1621

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
           Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 721 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 769

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 770 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 829

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 830 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 888

Query: 207 ID 208
           +D
Sbjct: 889 LD 890


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  ++V
Sbjct: 699 ERSIPCLVDGLKPGQRKVLFCCFKRNDKREVKVAQLAGSVAEM--SAYHHGEVSLMMTIV 756

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   VD++ +   
Sbjct: 757 GLAQNFVGSNNMNLLQPLGQFGTRLHGGKDSASPRYIFTMLSPLARLVFPSVDDNLL--- 813

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             YN +D+   EP  +    P +L NG  GI  G A+ IP++N++EI      +++  E
Sbjct: 814 -KYNYDDNQRVEPEWYMPIIPTVLVNGAEGIGTGWASKIPNYNIREIVSNIHRMLNGDE 871


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 194/437 (44%), Gaps = 65/437 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L    
Sbjct: 739  THLDQNVSQITYTEFINKELILFSMAD-NIRSIPSMVDGFKPGQRKVLFACFKRKL---K 794

Query: 71   AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
            A  K A++ G       + HG+ S+  ++V LAQ FV      ++S  G FG     G  
Sbjct: 795  AEIKVAQLGGYCSEHSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRASGGKD 854

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+SGI  
Sbjct: 855  AASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSSGIGT 913

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G ++ IP++N  +I       + N    +E +  +  G    TG I  E+          
Sbjct: 914  GWSSDIPNYNPVDIVNNLRRRLANE--PMEPMHPWFRG---FTGQITSEA---------- 958

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK-RIP-LLEDIRD 303
              G ++V   W   +       I +TE+P +V      E+I   I +  +IP L++D R+
Sbjct: 959  -PGKYKVLGEWDQPDED----TIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKDYRE 1013

Query: 304  ESAE-DVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSM------GRVPQV 354
               E  V  ++    R  D      +E +F LS        N+++ +M      G++ + 
Sbjct: 1014 YHTETTVHFIISLTERGKDAIKKEGIEKVFKLS-------ANLSITNMVCFDPSGKIKKY 1066

Query: 355  MPLDGIL--------------KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL              KE+L +   +++ R S + + +   +E  K L+++    
Sbjct: 1067 STPEQILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIE--KKLVVSNRKK 1124

Query: 401  DEIIAIIRN-EDKPKPV 416
             EI+A +R  E  P PV
Sbjct: 1125 AEIVAELRKLEFGPFPV 1141


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 2   FHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
          Length = 1626

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 733 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 781

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 782 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 841

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 842 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 900

Query: 207 ID 208
           +D
Sbjct: 901 LD 902


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+ D Y+
Sbjct: 13  FSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYD 67


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 733 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 781

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 782 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 841

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 842 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 900

Query: 207 ID 208
           +D
Sbjct: 901 LD 902


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 62/375 (16%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+T F  NM  L+ G+  Q+  LD +L+ ++  R EV+ RR+ F ++    R  +L GL 
Sbjct: 1   MQTSFGCNMVALNGGKPEQLTLLD-MLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLA 59

Query: 395 IAYLNIDEIIAIIRNEDKPKP----VMVSR-------------------------FSLTE 425
           IA  NIDE+I +IR    P+     +M  R                         ++L+E
Sbjct: 60  IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 120 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDE 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           F        RRT   E+         + +I +E + V +S+ G+I        R+ +   
Sbjct: 180 FGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 231

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592
              S +  ++ D +      +T   +L  S+ G     K + LP G   S    G+A+  
Sbjct: 232 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS---RGKALIN 288

Query: 593 LIDLNHNQDIVTAF-------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           ++ L   + I T          +D+   ++  +++G     + S+ +   R GK  +K+ 
Sbjct: 289 MLPLAPGERITTILPLPEDEASWDN-LDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLE 347

Query: 646 SEEKMKLVVKVTGDH 660
            E    L V+   +H
Sbjct: 348 EEGDEILSVETCTEH 362


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 705 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 753

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 754 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 813

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 814 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 872

Query: 207 ID 208
           +D
Sbjct: 873 LD 874


>gi|332816287|ref|XP_516332.3| PREDICTED: DNA topoisomerase 2-beta [Pan troglodytes]
          Length = 1621

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R++++A  +  L       + A  +GE     + HGD S+  +++ 
Sbjct: 691 RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYIGE--HSAYHHGDMSLNGTIIG 748

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ +       L+   G FG   + G   A+ RY   R+ ++A  I    D+DA+    
Sbjct: 749 MAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFH-PDDDAL---L 804

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            Y  +D    EP  +    P +L NG+ GI  G +++I +H+ +E+      +I+  E  
Sbjct: 805 NYLNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPE 864

Query: 214 IEKLLEYIIGPDFP--TGGIIVES 235
                  ++ P F   TG I  ES
Sbjct: 865 -------LMHPHFAGFTGEITAES 881


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 17/182 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSV 94
           ER+IP + DG K   R+I+++       F    KK  + V ++IG +     + HG+ S+
Sbjct: 667 ERSIPSIVDGLKTSQRKILYSC------FKRNLKKEIK-VAQLIGYVSEHSAYHHGEMSL 719

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           Y +++ +AQ ++      L+   G +G     G  A++ RY   R+T VA  +    D+D
Sbjct: 720 YSTILGMAQEYIGSNNANLLYPSGAYGTRIQGGKDASSARYIHTRLTDVARALYHP-DDD 778

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +      + +  +P  +    P +L NGT GI  G +T+IPS+N +++ E    L++  
Sbjct: 779 NILACVVDDGKKVQPKHYIPIIPMILVNGTVGIGTGWSTTIPSYNPRDLVENMKLLLNKQ 838

Query: 211 EI 212
           E+
Sbjct: 839 EL 840


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 196/437 (44%), Gaps = 65/437 (14%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L    
Sbjct: 720  THLDQNVSQITYTEFINKELILFSMAD-NIRSIPSMVDGFKPGQRKVLFACFKRKL---K 775

Query: 71   AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
            A  K A++ G       + HG+ S+  ++V LAQ FV      ++S  G FG     G  
Sbjct: 776  AEIKVAQLGGYCSEHSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRASGGKD 835

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+SGI  
Sbjct: 836  AASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSSGIGT 894

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G ++ IP++N  +I       + N    +E +  +  G  F TG I  E+          
Sbjct: 895  GWSSDIPNYNPVDIVNNLRRRLANE--PMEPMHPWFRG--F-TGQITSEA---------- 939

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK-RIP-LLEDIRD 303
              G ++V   W   +       I +TE+P +V      E+I   I +  +IP L++D R+
Sbjct: 940  -PGKYKVLGEWDQPDED----TIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKDYRE 994

Query: 304  ESAE-DVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSM------GRVPQV 354
               E  V  ++    R  D      +E +F LS        N+++ +M      G++ + 
Sbjct: 995  YHTETTVHFIISLTERGKDAIKKEGIEKVFKLS-------ANLSITNMVCFDPSGKIKKY 1047

Query: 355  MPLDGIL--------------KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
               + IL              KE+L +   +++ R S + + +   +E  K L+++    
Sbjct: 1048 STPEQILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIE--KKLVVSNRKK 1105

Query: 401  DEIIAIIRN-EDKPKPV 416
             EI+A +R  E +P PV
Sbjct: 1106 AEIVAELRKLEFRPFPV 1122


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK       K A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 836

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 837 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 895

Query: 207 ID 208
           +D
Sbjct: 896 LD 897


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 820 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 868

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 869 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 928

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 929 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 987

Query: 207 ID 208
           +D
Sbjct: 988 LD 989


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           NFG+IDGD AAA RYTEAR+T  A  +L+ +D+D VD    Y+E   EPVVFPSK
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHGD 91
           R+IP + DG KP  R+++             FK++       A++ G V  +   H HG+
Sbjct: 716 RSIPCMLDGLKPGQRKVMFT----------CFKRNDKREVKVAQLAGSVAEMSAYH-HGE 764

Query: 92  QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
           QS+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +  LI   +
Sbjct: 765 QSLCSTIINLAQNFVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSTLTRLIFHPL 824

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           D+  ++++   N+   EPV +    P LL NG  GI  G +T IP+HN +++
Sbjct: 825 DDPLLEYQYEDNQR-IEPVWYLPIIPMLLVNGAEGIGTGWSTKIPNHNPRDV 875


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 171/391 (43%), Gaps = 60/391 (15%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI---VGEVIGKL-----HPHGDQ 92
            R+IP L DGFKP  R++++            FK++ R+   V ++ G +     + HG+ 
Sbjct: 738  RSIPCLVDGFKPSQRKVLYC----------CFKRNLRVEIKVAQLAGYVSEHSSYHHGEA 787

Query: 93   SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
            S++ +++ +AQ F+      L+S  G FG   + G  AA+ RY   ++  +A       D
Sbjct: 788  SLHGTIINMAQDFIGSNNSNLLSPNGQFGTRILGGKDAASPRYIFTKLEAIAYKFFDPND 847

Query: 149  EDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
               +++ D    ED    EP  +    P +L NG+ GI  G ++ IP++N  ++ E   A
Sbjct: 848  NSLLNYLD----EDGQLIEPEWYVPVIPMVLVNGSEGIGTGWSSFIPNYNPLDLIENLRA 903

Query: 206  LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
             I   E   + L+ +  G  F TG I  E R    +        F VR  + VE+     
Sbjct: 904  RIKG-EAPTKPLVPWYRG--F-TGSI--EERSGTRDG---DSQAFVVRGIFHVEDDS--- 951

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
              +V+TE+P +       + +  L+    I   ++   +S      VLF    S+ P+ +
Sbjct: 952  -TLVITELPVKTWTHTYKQFLESLMENDTIKDFKENHTDSK-----VLF--TISMTPEKM 1003

Query: 326  MESIFMLSDMETRFPL-------NMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             E +     +  +F L       NM++    GR+ +      I+  +   R     +R +
Sbjct: 1004 QEIVLSPGGIMRKFKLESSISAANMHLFDADGRIQKYDSPHEIISAFYDIRLAYYGKRKA 1063

Query: 378  FRMQAIDRRVEILKG---LLIAYLNIDEIIA 405
              +Q +  ++E+L      ++A +  D I++
Sbjct: 1064 AMLQKLTDQIEMLANKVKFILAVIQGDLIVS 1094


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  +++
Sbjct: 172 ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQLAGSVAEMSA--YHHGETSLMGTII 229

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A  +    DE  ++++
Sbjct: 230 NLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIFTMLSTLARKLFNTFDEPMLNYQ 289

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N++  EP  +    P +L NG  GI  G +T +P+++V+EI    L +ID
Sbjct: 290 YDDNQK-IEPEWYIPLIPMVLVNGAEGIGTGWSTKVPNYDVREIINNMLRMID 341


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 18/192 (9%)

Query: 41  RAIPDLRDGFKPVHRRII-HAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDS 97
           R+IP + DG K   R+++ +A++ +G +      K A++ G    + + H HG+ S+ ++
Sbjct: 664 RSIPKMLDGQKAGQRKVVFYALNHVGKNEA----KVAQMAGTAAQVTQYH-HGEVSLANT 718

Query: 98  LVRLAQPFVQRY--PLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           ++ +A  +   +  PL+   G FG+    +SAAA RY    ++     +++  D D +  
Sbjct: 719 IIGMAATYTGSHNLPLLYPSGQFGSRHAKNSAAAPRYIFTHISSFLPRLIKSEDNDVL-- 776

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             TYN +++   EP V+    P +L NG +GI  G    +P +N  E+ +A   + +  E
Sbjct: 777 --TYNVDENKKVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGE 834

Query: 212 ISIEKLLEYIIG 223
           +S  K + + +G
Sbjct: 835 LSTSKWVPWYVG 846


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
           cuniculus]
          Length = 1667

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DGFKP  R+++               + A  V E+    + HG+Q++  ++V
Sbjct: 776 ERSIPSLVDGFKPGQRKVLFTCLNRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 833

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 834 NLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFL 893

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 894 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 945


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 155/377 (41%), Gaps = 33/377 (8%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DG KP  R+++    +  L       + +  V E     + HG+QS+ D+++ 
Sbjct: 709  RSIPCVVDGLKPSQRKVLFGAFKRKLTSEIKVVQFSGYVSEHAA--YHHGEQSLNDTIIG 766

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            +AQ FV      L    G FG+  + G  AA+ RY    ++ +  LI +  D+   ++  
Sbjct: 767  MAQDFVGSNNINLFVPAGQFGSRLLGGKDAASPRYIYTYLSPITRLIFKEDDDLLCNYL- 825

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
                +  EP  +    P +L NG  GI  G +T IP++N  EI    +A ++N     EK
Sbjct: 826  VEEGQSIEPEFYLPIIPMVLVNGAEGIGTGYSTKIPNYNPVEIANYIIAKLNN-----EK 880

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
              E        TG I    +            G+ +R R  + +V   ++  V+TE+P  
Sbjct: 881  PPELHPWWRGFTGDIYKRPK------------GYLIRGR--ITKVDDLTY--VITELPIG 924

Query: 277  VQKSRLIEKIAELIIA-KRIPLLEDIRDESAEDV---RIVLFPKNRSLDPDLLMESIFML 332
                   + + E+++  K+ P++ D ++   +      ++L P+         +   F L
Sbjct: 925  RWTQDYKQILTEMMLPEKKAPVIADFKENHTDTTVHFTVMLTPEQAQALQGQDLYKFFKL 984

Query: 333  SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
                T    N+   S G++        I+ E+   R      R  F +   ++ +  L  
Sbjct: 985  EAAITTSNFNL-FSSTGQITHYASPQHIIDEFFEFRLPYYQERKDFLLAKFEKEIRRLSN 1043

Query: 393  LLIAYLNIDEIIAIIRN 409
            +    L + E   II N
Sbjct: 1044 MTRFILEVVEGKLIINN 1060


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++   
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLL 60

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  
Sbjct: 61  EIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAA 120

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E F        RR+        D     + +I +E I V IS  G+++  K+
Sbjct: 121 IVEKFGDD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKT 166


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+I+ A+     +  A   + +  + EV    H HG+ S+ +++++
Sbjct: 679 RALAHAVDGLKPSQRKILWAIMRRSGNESAKVAQMSGYISEV-SAFH-HGEMSLQETIIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D+  
Sbjct: 737 MAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV- 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--PEISI 214
           T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    ++ +
Sbjct: 796 TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---- 420
           + H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+I +IR   + K V ++R    
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIR---RSKTVKIAREGLM 57

Query: 421 --FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q +AIL+++LR L  LE  +I +E D L A+  + +++L S ++Q   +  E
Sbjct: 58  GLLEIDEIQANAILDMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVREE 117

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           +  + E F        RR+        D     + +I +E I V IS  G+++  K+
Sbjct: 118 LAAIVEKFGDD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKT 166


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 637 NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSEMKVAQL 695

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRY 131
           A  V E     + HG+ S+ D++V+LA  F       L+   G FG   + G  A+  RY
Sbjct: 696 AAYVSEKTS--YHHGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRY 753

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              ++T+ A ++    D+  +++ D  + +  EP  +    P +L NGT GI  G ++ I
Sbjct: 754 IFTKLTKNARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYI 812

Query: 192 PSHNVQEI 199
           P  N  +I
Sbjct: 813 PPFNPLDI 820


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 22/204 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R++++A  +  L       + A  +GE     + HGD S+  +++ 
Sbjct: 719 RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYIGE--HSAYHHGDMSLNGTIIG 776

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ +       L+   G FG   + G   A+ RY   R+ ++A  I    D+DA+    
Sbjct: 777 MAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFH-PDDDAL---L 832

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            Y  +D    EP  +    P +L NG+ GI  G +++I +H+ +E+      +I+  E  
Sbjct: 833 NYLNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPE 892

Query: 214 IEKLLEYIIGPDFP--TGGIIVES 235
                  ++ P F   TG I  ES
Sbjct: 893 -------LMHPHFAGYTGEITAES 909


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+I+ A  +  L       + +  V E     + HG+ S+  ++  
Sbjct: 698 RSIPSVVDGLKPGQRKILFACFKRKLTKQLKVSELSGFVSECTA--YQHGESSLQVTITG 755

Query: 101 LAQPFV--QRYPLISGQGNFGN-IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+  +G+FG  +DG   AA+ RY    ++  A  +    D+  +    
Sbjct: 756 MAQTFVGSNNVNLLEPEGSFGTRLDGGKDAASPRYIYTLLSPFARKLFPATDDPLL---- 811

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           TYN +D    EP+ +    P +L NG  GI  G +T+IP++N +++      L++N E+
Sbjct: 812 TYNLDDDKKIEPMWYAPVVPLVLINGADGIGTGWSTTIPNYNPEDVVANIRRLMNNEEL 870


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 179/394 (45%), Gaps = 37/394 (9%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N     T ++ + K +S    +++  + ++ +  K R+IP + DG KP  R+I+ +  + 
Sbjct: 679  NNHQEGTYIDHSKKEISYTDFIDKELILFSKADCK-RSIPSIVDGLKPGQRKILFSCFKR 737

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN-- 120
             L       + A  V E     + HG+ S+  ++V +AQ FV      L+   G FG   
Sbjct: 738  NLKKEIKVAQLAGYVSEQSA--YHHGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRL 795

Query: 121  IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  +A+ RY   +++++   I    D+  +++ D  + +  EP  +    P +L NG+
Sbjct: 796  QGGKDSASPRYIFTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGS 854

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI    +T+I ++N  +I E   ALI   E   ++   +  G D    GII        
Sbjct: 855  EGIGTAWSTNIETYNPVDIVEGLKALIKGEE--AKEFHPWYKGFD----GIIE------- 901

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
               RL    ++ +    +E++   +  + ++E+P ++      E++ +++ A+++   +D
Sbjct: 902  ---RLAPTKWQTKG--VIEKIDDNT--LDISELPIRIWTESFKERLEKMMEAQQV---DD 951

Query: 301  IRDESAEDVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
             R E+  DV +    K  ++ +  D     ++    +  +F  +  VL    G + +   
Sbjct: 952  FR-ENHTDVTVSFTVKMTDKQM-KDAEDAGLYDYFKLFKKFSTSNMVLFSEEGGIKEYET 1009

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
            +  ILKE+   R +   +R  + ++ + + +EIL
Sbjct: 1010 VLDILKEFYPIRLKFYGKRKEYMLEKMKKELEIL 1043


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP L DGFKP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 1151 ERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 1208

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+   G FG     G  AA+ RY    ++ ++ L+   VD++ + F 
Sbjct: 1209 NLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKFL 1268

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 1269 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 1320


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 144/325 (44%), Gaps = 52/325 (16%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +D  +    L +  +K V +   +++  + ++++   ER+IP + DGFK   R+I+ +  
Sbjct: 775  MDQYTPGAYLDQYGIKKVKITDFIDKELILFSIADC-ERSIPSIVDGFKTSQRKILFSC- 832

Query: 63   EMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQ 115
                 F    KK  + V ++IG +     + HGDQS+  +++ LAQ +V      ++   
Sbjct: 833  -----FKRNLKKEIK-VAQLIGYVSEQSAYHHGDQSLASAIIGLAQTYVGANNINVLYPG 886

Query: 116  GNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G FG+    G  ++A RY   R+ ++A  +    D  A+    T + +  +P  +    P
Sbjct: 887  GGFGSRLAGGKDSSAPRYINTRLEEIARTLFPEEDH-ALLSHLTDDGKRVQPKWYIPVIP 945

Query: 174  NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             +L NG+ GI  G +++IP++N +++ E    LI+  E+                     
Sbjct: 946  MILVNGSKGIGTGWSSTIPNYNPRDLIENMKLLIEGKEL--------------------- 984

Query: 234  ESRESIVESYRLGRGGFRVRARWCVEEVGRGSW------CIVVTEIPYQVQKSRLIEKIA 287
               + IV  YR  +G   ++       V +G W       + +TE+P +   +   + + 
Sbjct: 985  ---KPIVPWYRGFKGTIELQTGKTSNFVAKGVWRKLDEYRLEITELPIESWTNDFKDLVQ 1041

Query: 288  ELIIAKRIPLLEDIRDESAEDVRIV 312
             LI     P  +  R E+ E ++ V
Sbjct: 1042 NLI----DPQGKQKRKEAKEKIKQV 1062


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHP 88
           Y+ ++ S   ER+IP L DGFKP  R+I+ A  +  L       K A++ G V     + 
Sbjct: 675 YILFSKSD-NERSIPHLLDGFKPSQRKILFACFKRKL---KGEIKVAQLTGYVAEHSAYH 730

Query: 89  HGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELIL 144
           HG+ S+  ++V +AQ F       L++  G FG   + G  AA+ RY   ++  +   I 
Sbjct: 731 HGEASLQATIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASARYIFTKLEPITRAIF 790

Query: 145 QGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              D++ +    +Y  +D    EP  +    P +L NG  GI  G +TS+ ++N +EI 
Sbjct: 791 HPDDDELL----SYINDDGVTVEPEYYVPVIPMILVNGADGIGTGWSTSVNNYNPREIV 845


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 51/265 (19%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 721 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 769

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 770 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 829

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI       
Sbjct: 830 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREI------- 881

Query: 207 IDNPEISIEKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++N    +E L  + + P++    G I E          LG+  + V     V  V R +
Sbjct: 882 VNNVRRMLEGLDPHPMLPNYKNFKGTIQE----------LGQNQYAVSGEIFV--VDRNT 929

Query: 266 WCIVVTEIP----YQVQKSRLIEKI 286
             + +TE+P     QV K +++E +
Sbjct: 930 --VEITELPVRTWTQVYKEQVLEPM 952


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 51/265 (19%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 721 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 769

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 770 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 829

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI       
Sbjct: 830 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREI------- 881

Query: 207 IDNPEISIEKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++N    +E L  + + P++    G I E          LG+  + V     V  V R +
Sbjct: 882 VNNVRRMLEGLDPHPMLPNYKNFKGTIQE----------LGQNQYAVSGEIFV--VDRNT 929

Query: 266 WCIVVTEIP----YQVQKSRLIEKI 286
             + +TE+P     QV K +++E +
Sbjct: 930 --VEITELPVRTWTQVYKEQVLEPM 952


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP L DG KP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 847  ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 904

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      ++   G FG     G  AA+ RY    ++ +A+L+   VD + + F 
Sbjct: 905  NLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSNLLKFL 964

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               N++  EP  +    P +L NG  GI  G A  IP+++V+EI
Sbjct: 965  YDDNQK-VEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREI 1007


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 23/180 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI------VGEVIGKLHPHGDQSV 94
           R++P++ DG+KP  R+++  M      FG   +   R+      V +  G  + HG++S+
Sbjct: 201 RSLPNIVDGYKPSQRKVLFTM------FGRYERDEVRVSQLAGAVSQYCG--YHHGEESL 252

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
            ++++RLAQ FV      L+   G FG     G+ AA+ RY    ++ +A +I    D+ 
Sbjct: 253 VNTIIRLAQDFVGSNNLNLLLPLGQFGTRLAGGEDAASARYIYTSLSPLARIIFPRADDK 312

Query: 151 AVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            + +     EE++  EP  +    P +L NG  GI  G AT I     ++I   A  LID
Sbjct: 313 VLKY---LMEENTFIEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQIISNAQRLID 369


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 193/424 (45%), Gaps = 75/424 (17%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++ + K+++    + +  + ++++    R+IP + DG KP  R++I+A       F  
Sbjct: 771  TFLDHSTKSITYTDFVNKELILFSMAD-NMRSIPSVVDGLKPGQRKVIYAC------FKR 823

Query: 71   AFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
               K  ++V E+ G +     + HG+ S+  +++ LAQ FV       +   GNFG+   
Sbjct: 824  NLVKDQKVV-ELAGYISEQTSYHHGEVSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLA 882

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLAN 178
             G  AA+ RY   R++  A  I   +DE  ++ +     ED    EP V+    P +L N
Sbjct: 883  GGSDAASPRYIHTRLSPFARKIFSPLDEPNLEPQ----YEDGKRIEPKVYAPIIPMILCN 938

Query: 179  GTSGIAVGMATSIPSHNVQEIC---EAALALID--NPE-ISIEKLLEYIIGPDFPTGGII 232
            G  GI  G +TSIP+++  +I    +  +  +D  NPE  + + ++ +  G      G  
Sbjct: 939  GADGIGTGWSTSIPNYHPIDIVNNLKRRMGRLDPSNPEDAAFQPMMPWFRG----WKGTP 994

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
             +S +   + Y+             + E+   +  ++VTE+P ++       K+ E+I  
Sbjct: 995  EQSEK---DRYKFN----------GICEIDERTGEVIVTELPIRMWTDDFKAKLEEVISG 1041

Query: 293  KRIPL-LEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-- 348
             + P+ ++D ++    ++V  V+   ++    D+L + +        RF L+  + +   
Sbjct: 1042 TKGPVWIKDYKEFNDHKNVHFVIQMDDKHTK-DILADGLL------ERFKLSKQIATSNL 1094

Query: 349  ------GRVPQVMPLDGILKEWLAHRREVLFRR---------SSFRMQAIDRRV--EILK 391
                  G++ +   ++ IL+E+  +R ++  +R         S FR  +   R   EI++
Sbjct: 1095 VAFDTRGQIRKYEKVEDILEEFYNYRLDMYAQRKKHWLGVYHSDFRKLSEQARFIREIIE 1154

Query: 392  GLLI 395
            G L+
Sbjct: 1155 GKLV 1158


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++    +          + A  V E+    + HG+QS+  ++V 
Sbjct: 730 RSIPCVLDGLKPGQRKVMFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQSLCSTIVN 787

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  +A+ RY    M+ +  LI   +D+  ++++ 
Sbjct: 788 LAQNFVGSNNINLLYPGGQFGTRLAGGKDSASPRYIFTMMSALTRLIFHPLDDPLLEYQY 847

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
             N++  EP+ +    P +L NG+ GI  G +T IP HN ++I
Sbjct: 848 DDNQK-IEPLWYLPIIPMVLVNGSEGIGTGWSTKIPLHNPRDI 889


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
           caballus]
          Length = 1630

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 51/265 (19%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 740 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 788

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 789 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 848

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI       
Sbjct: 849 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREI------- 900

Query: 207 IDNPEISIEKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++N    +E L  + + P++    G I E          LG+  + V     V  V R +
Sbjct: 901 VNNVRRMLEGLDPHPMLPNYKNFKGTIQE----------LGQNQYAVSGEIFV--VDRNT 948

Query: 266 WCIVVTEIP----YQVQKSRLIEKI 286
             + +TE+P     QV K +++E +
Sbjct: 949 --VEITELPVRTWTQVYKEQVLEPM 971


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 51/265 (19%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 721 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 769

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 770 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPA 829

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI       
Sbjct: 830 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREI------- 881

Query: 207 IDNPEISIEKLLEYIIGPDFPT-GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++N    +E L  + + P++    G I E          LG+  + V     V  V R +
Sbjct: 882 VNNVRRMLEGLDPHPMLPNYKNFKGTIQE----------LGQNQYAVSGEIFV--VDRNT 929

Query: 266 WCIVVTEIP----YQVQKSRLIEKI 286
             + +TE+P     QV K +++E +
Sbjct: 930 --VEITELPVRTWTQVYKEQVLEPM 952


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+I+ A+     +  A   + +  + EV    H HG+ S+ +++++
Sbjct: 679 RALAHAVDGLKPSQRKILWAIMRRSGNESAKVAQLSGYISEV-SAFH-HGEMSLQETIIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D+  
Sbjct: 737 MAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV- 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--PEISI 214
           T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    ++ +
Sbjct: 796 TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+I+ A+     +  A   + +  + EV    H HG+ S+ +++++
Sbjct: 679 RALAHAVDGLKPSQRKILWAIMRRSGNESAKVAQLSGYISEV-SAFH-HGEMSLQETIIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D+  
Sbjct: 737 MAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV- 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--PEISI 214
           T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    ++ +
Sbjct: 796 TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 719 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 767

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ ++ L+   
Sbjct: 768 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPA 827

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 828 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 886

Query: 207 ID 208
           +D
Sbjct: 887 LD 888


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+I+ A+     +  A   + +  + EV    H HG+ S+ +++++
Sbjct: 679 RALAHAVDGLKPSQRKILWAIMRRSGNESAKVAQLSGYISEV-SAFH-HGEMSLQETIIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   +++ +A ++    DE  +D+  
Sbjct: 737 MAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV- 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN--PEISI 214
           T   +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  ++I+    ++ +
Sbjct: 796 TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 710 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 758

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ ++ L+   
Sbjct: 759 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPA 818

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 819 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 877

Query: 207 ID 208
           +D
Sbjct: 878 LD 879


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 39/314 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++N  AVS    + +  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 689 LYQKNTIAVSYSDFINKELVLFS-NLDNERSIPSMVDGLKPGQRKVLFTCLKRN---DKK 744

Query: 72  FKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
             K A++ G V     + HG+ S+  +++ LAQ +V      L+   G FG     G  A
Sbjct: 745 EIKVAQLAGSVAEHSAYHHGEASLMGTIINLAQNYVGSNNLNLLLPIGQFGTRLQGGKDA 804

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGI 183
           A+ RY    +  +  LI    D+  +     YN++D+   EP  +    P +L NG  GI
Sbjct: 805 ASPRYIFTLLNPLTRLIFHVHDDPLL----KYNKDDNQKIEPEWYIPIIPMVLVNGADGI 860

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG---IIVESRESIV 240
             G  T IP+HN +EI +    ++D  E    K        D  + G    +V    SI+
Sbjct: 861 GTGWMTKIPNHNPREIVQNIKRMLDGDEPLPMKPWYKGFKGDIESYGDSRYLVSGEISII 920

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            + +L            + E+  G+W         Q  K  ++E +   +  K  PL++D
Sbjct: 921 SNNQLE-----------ITELPVGTWT--------QAYKENVLEPLLHGVENKVPPLIQD 961

Query: 301 IRDESAE-DVRIVL 313
            ++ + +  VR V+
Sbjct: 962 YKEYNTDTTVRFVI 975


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 13/176 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP   DG K   R+++ A  +  L       + A    E     + HG+ S++ ++V 
Sbjct: 673 RSIPSAIDGLKTSQRKVLFACLKRKLFQEMKVAQLAGYCSEHTA--YHHGEASLHSTIVN 730

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ +V      L+   G FG     G  AA+ RY   ++ +   LI    D+  ++   
Sbjct: 731 MAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFTKLNKHTRLIYPEEDDALLN--- 787

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
            YN++D    EP  +    P LL NG+ GI  G +T IP+HN  E+ +  L L+D+
Sbjct: 788 -YNDDDGISVEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNPIEVIDRMLHLLDS 842


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV--IGKLHPHGDQSVYDSL 98
           RAIP   DG KP  R+++    +       +  K A++ G V  +   H HG+ S+ D++
Sbjct: 697 RAIPCSADGLKPGQRKVLWTCFKRK---DKSKVKVAQLSGSVSEMSAYH-HGEVSLMDTI 752

Query: 99  VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           ++LAQ +V      L+   G FG+  + G   AA RY   R+  +   +    D DA+  
Sbjct: 753 IKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHAAARYIFTRLAPITRKLYPEAD-DALFK 811

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           R+  +    EP  +    P +L NG+SGI  G +T+IP+HN+++  +    +I+  E
Sbjct: 812 RNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIEGKE 868


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 23/183 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---KSARIVGEVIGKL-----HPHGDQ 92
           RAIP   DG KP  R+++             FK   KS   V ++ G +     + HG+ 
Sbjct: 697 RAIPCSADGLKPGQRKVL----------WTCFKRKDKSKVKVAQLSGSVSEMSAYHHGEV 746

Query: 93  SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
           S+ D++++LAQ +V      L+   G FG+  + G   AA RY   R+  +   +    D
Sbjct: 747 SLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHAAARYIFTRLAPITRKLYPEAD 806

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            DA+  R+  +    EP  +    P +L NG+SGI  G +T+IP+HN+++  +    +I+
Sbjct: 807 -DALFKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIE 865

Query: 209 NPE 211
             E
Sbjct: 866 GKE 868


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 14/206 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V+ ++K +     + +  + +++    ER+IP + DG+KP  R+++    +  L  G 
Sbjct: 651 TTVDHSIKKLRYTDFINKELIQFSIYDT-ERSIPSVVDGWKPGQRKVLFGCLKRNL-VGE 708

Query: 71  AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDS 125
              K A++ G V     + HG+ S+  +++ +AQ FV      ++   G FG+    G  
Sbjct: 709 C--KVAQLTGYVAEHSAYHHGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKD 766

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGI 183
           A+A RY   ++  +  LI    D++ ++++   NEE    EP+ +    P +L NG+ GI
Sbjct: 767 ASAARYIFTKLNPITRLIFVEEDDNILEYQ---NEEGQTIEPMYYIPTIPMVLVNGSEGI 823

Query: 184 AVGMATSIPSHNVQEICEAALALIDN 209
             G ++ IP++N  +I +     ++N
Sbjct: 824 GTGFSSQIPNYNPLDIIDNLKRYLNN 849


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 10/205 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E++ K VS R  + +  + ++ +   ER+IP L DGFKP  R+++    +        
Sbjct: 700 LYEKDTKRVSYRDFVNKELVLFS-NMDNERSIPSLMDGFKPGQRKVLFTCIKRN---DKK 755

Query: 72  FKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
             K A++ G V     + HG+ S+  +++ LAQ FV      L+   G FG     G  A
Sbjct: 756 EIKVAQLAGSVAEHSAYHHGEASLMGTIIGLAQDFVGSNNINLLLPNGQFGTRLQGGKDA 815

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RY    M+++  +I    D+  +  +   N+   EP  +    P +L NGT GI  G
Sbjct: 816 ASPRYIFTLMSKLTRIIFHPHDDPLLKHQMDDNQR-IEPEYYAPIIPMILVNGTDGIGTG 874

Query: 187 MATSIPSHNVQEICEAALALIDNPE 211
             T I ++N +E+      ++D  E
Sbjct: 875 WMTKILNYNPREVVANVKRMLDGEE 899


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP++ DGFKP  R+++    +          K A++ G V     + HG+ S+  ++V
Sbjct: 752 RSIPNMMDGFKPGQRKVLFTCLKRN---DKREVKVAQLAGSVAEHSAYHHGETSLMATIV 808

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +A  I    D+  + + 
Sbjct: 809 NLAQNFVGSNNINLLQPIGQFGTRLAGGKDSASPRYIFTMLSPLARYIFHKHDDPLLKYE 868

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
              N+   EPV +    P +L NG  GI  G  T IP++N +EI E
Sbjct: 869 YDDNQR-IEPVYYVPVIPMVLVNGADGIGTGWMTKIPNYNPREIIE 913


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 23/183 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-----KLHPHGDQSVY 95
           R+IP   DG KP  R++++A  +  L       KS   V ++ G       + HG+ S+ 
Sbjct: 708 RSIPSAIDGLKPSQRKVLYACFKRKL-------KSEIKVAQLTGYCAEHTAYHHGEASLQ 760

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ +AQ FV      L+   G FG   + G  AA+ RY    +  +A  +    D+  
Sbjct: 761 STIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYTYLAPIARSLFPEADDTL 820

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    +Y E+D    EP  +    P L+ NG  GI  G +T IP H+  ++ E  LA +D
Sbjct: 821 L----SYLEDDGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPHSANDVLEYILAKLD 876

Query: 209 NPE 211
             E
Sbjct: 877 GAE 879


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R+IP + DG KP  R+I++A  +  L       + +  V E     + HG+ S+  ++V
Sbjct: 698 DRSIPSMLDGLKPGQRKILYACFKRNLKKDIKVAQLSAYVAE--HSAYHHGEGSLASTIV 755

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY   R+  +   +    D+  + + 
Sbjct: 756 NLAQDFVGSNNVNLLHPSGQFGTRLQGGKDAASARYIYTRLAALTRHLFNENDDQLLTY- 814

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              NEE    EP  +    P +L NG  GI  G +T+IP++N ++I
Sbjct: 815 --LNEEGQSIEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDI 858


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP + DG KP  R++I    +          K A++ G V     + HG+QS+  ++V
Sbjct: 721 RSIPSMIDGLKPGQRKVIFTCIKRN---DKREVKVAQLAGSVAEHSAYHHGEQSLAMTIV 777

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ +V      L+  +G FG     G  +A+ RY    M+ +  LI    D D +   
Sbjct: 778 NLAQNYVGSNNINLLEPRGQFGTRLSGGKDSASPRYIFTLMSPLTRLIFHPHD-DPLLVH 836

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +  + +  EPV +    P +L NG  GI  G +T IP++N ++I E    L+D
Sbjct: 837 EFEDNQKIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLD 889


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 41/51 (80%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  R
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLR 51


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 14/205 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V+  V A+S    + +  + ++++   +R+IP + DG KP  R+++ A  +  L    
Sbjct: 685 TFVDYAVDAMSYGDFVNKELILFSVAD-NQRSIPSVVDGLKPSQRKVLFACFKRKLKKEI 743

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
              + A  V E     + HG+ S+  ++V +AQ FV      L++  G FG   + G  A
Sbjct: 744 KVAQLAGYVSEHAA--YHHGEMSLTGTIVGMAQDFVGSNNVNLLTPAGQFGTRIMGGKDA 801

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGI 183
           A+ RY   ++  VA  +    D    DF   Y E+D    EP  +    P  L NG  GI
Sbjct: 802 ASSRYIFTKLEAVARKVFHPDD----DFVLDYLEDDGQSIEPTYYVPVLPFALCNGADGI 857

Query: 184 AVGMATSIPSHNVQEICEAALALID 208
             G ATS+P++  + +      +ID
Sbjct: 858 GTGWATSVPNYAPRALIGVLRRMID 882


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 29/257 (11%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            R+IP + DG KP  R++ + M +   +   A  K   +VG V+G+  + HGD ++  ++V
Sbjct: 788  RSIPSVVDGLKPGQRKVFYVMFDRKSN---AELKVNTLVGHVMGQAAYHHGDAALVMTIV 844

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+  +G FG   + G  AA+ RY    + ++   +    D+  +D+ 
Sbjct: 845  GLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAASGRYIFTALPKITRALFPQADDALLDYL 904

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
            D   ++  EP  +    P +L NG  GI  G +TS+P++N  EI              + 
Sbjct: 905  DDDGQK-VEPHWYIPVVPQVLMNGAEGIGTGWSTSVPNYNPHEI--------------VA 949

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
             L     G D              VE +  GR  F+V  R  V ++   +W I  TE+P 
Sbjct: 950  NLRRRTAGEDIIPMKPWFRGFTGDVEEFSPGR--FKVSGR--VTQIDEKTWEI--TELPI 1003

Query: 276  QVQKSRLIEKIAELIIA 292
            +   S   E + E I++
Sbjct: 1004 RTWTSNYKESLEERIVS 1020


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYAL-STIKERAIPDLRDGFKPVHRRIIH 59
           M   N      L EE +     RF   + +  Y +  +    +IP L DG KP  R+++ 
Sbjct: 271 MQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYEIVCSWNLHSIPCLVDGLKPGQRKVLF 330

Query: 60  AMSEMGLDFGAAFK---KSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFVQRYP--LI 112
           A       F  A K   K A++ G V  I   H HG+QS+  ++V LAQ +V  +   L+
Sbjct: 331 AC------FKRANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIVNLAQDYVGSHNINLL 383

Query: 113 SGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFP 169
              G FG     G  +A+ R   A+++QV   +    D++ + F   Y E    EP  + 
Sbjct: 384 LPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRF--LYEENQRIEPEWYC 441

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
              P +L NG  G   G +T+IP++N +E+ +    LI
Sbjct: 442 PIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLI 479


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 9/172 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSLV 99
           R+IP L DG KP  R+++ +  +  L    +  K A++VG V  +  + HG+QS+  ++V
Sbjct: 663 RSIPSLVDGLKPGQRKVMFSCFKRNL---RSEIKVAQLVGYVSEQSAYHHGEQSLCSTIV 719

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG+    G  AA+ RY    ++ +  LI    D+  + + 
Sbjct: 720 NLAQDFVGSNNINLLLPIGQFGSRLQGGKDAASPRYIFTSLSPLTRLIFNENDDAILSYL 779

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +  N    EP  +    P +L NG  GI  G +TSIP+ N  ++ E    LI
Sbjct: 780 NDDNL-SIEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPVDVVENIRRLI 830


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 696 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 744

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ +V      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 745 EVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIFHP 804

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  ++++ T + +  EP+ +    P +L NG  GI  G AT I +HN +EI +    +
Sbjct: 805 LDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWATKIANHNPREIMKNLRRM 863

Query: 207 IDNPE 211
           I++ E
Sbjct: 864 INSEE 868


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 1074

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 639 NVRNLSISNFVHKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRY 131
           A  V E     + HG+ S+ D++V+LA  ++      L+   G FG   + G  A+  RY
Sbjct: 698 AAFVAE--KSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  +
Sbjct: 756 IFTKLTKDARKIFDPRDDPILNYLDD-DGRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 192 PSHNVQEI 199
           P  N ++I
Sbjct: 815 PPFNPKDI 822


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           Y ++VR+AQ F  RYPL  G GNFG+ DGD AAA RYTEAR+T +AEL+L
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAELLL 50


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 55/280 (19%)

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS-------- 419
           ++ RR+ F ++    R  IL+GL IA  NID II +I+    P   K  +V+        
Sbjct: 1   MVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDV 60

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL+LRL  L  LE  +I  E   
Sbjct: 61  AQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQ 120

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +LNS ++    I  E+ ++++ F        RRT   E++ A      + 
Sbjct: 121 LLELIAELLHILNSPERLMEVIQEELEKIRDEFGDE-----RRT---EITAASHDIDIED 172

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V +S  G+++  K    +         SA   K+ D ++  L A+T D IL 
Sbjct: 173 LIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILC 232

Query: 566 LSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
            ST G+ Y L    L   S    G  I  ++ L  N+ I 
Sbjct: 233 FSTRGRLYWLKVYQLPFASRNARGRPIVNILPLEDNERIT 272


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 23/183 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R+II         F    KK  + V +++G +     + HG+QS+ 
Sbjct: 765 RSIPSVADGLKPGQRKIIWGC------FKRKLKKEIK-VAQLVGYVSEHAAYHHGEQSLT 817

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+   G +G  D  G   AA RY    ++ +   +    DE  
Sbjct: 818 MTIVNLAQDYVGSNNINLLMPNGQYGTRDQGGKDHAAARYIFTELSPLTRSLFNTADEPL 877

Query: 152 VDFRDTYNEEDSEPV---VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +       +ED++PV    +    P +L NG  GI  G +TSIPS+N  +I      L+D
Sbjct: 878 L----KQQKEDNQPVEPEYYMPIIPMVLVNGADGIGTGWSTSIPSYNPTDIVANIRRLMD 933

Query: 209 NPE 211
             E
Sbjct: 934 GEE 936


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 733 ERSIPSLVDGLKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 781

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 782 EQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPS 841

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 842 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRM 900

Query: 207 ID 208
           +D
Sbjct: 901 LD 902


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
           gallopavo]
          Length = 1688

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 799 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 856

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 857 NLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFL 916

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 917 YDDNQR-VEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLD 968


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 23/180 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DGFKP  R+++++  +  L       KS   V ++IG +     + HG+QS+ 
Sbjct: 687 RSIPSVLDGFKPGQRKVLYSCFKRKL-------KSEIKVAQLIGYVSEHTSYHHGEQSLA 739

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V +AQ +V      L+   G FG     G  +AA RY    +  +   I   +D   
Sbjct: 740 QTIVGMAQDYVGSNNIYLLKPNGAFGTRAAGGKDSAAPRYIFTELNNITPNIFNPLDNPL 799

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +    TY +ED    EP  +    P +L NG  GI  G +T+IP  N  EI +    L++
Sbjct: 800 L----TYLQEDDQTIEPQWYLPVIPMILVNGAEGIGTGWSTNIPCFNPLEIVQNIKKLMN 855


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 738 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 795

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F 
Sbjct: 796 NLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFL 855

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 856 YDDNQR-VEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLD 907


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSLV 99
           R+IP L DG KP  R++I +  +  L    +  K A++VG V  +  + HG+QS+  ++V
Sbjct: 663 RSIPSLVDGLKPGQRKVIFSCFKRNL---RSEIKVAQLVGYVSEQSAYHHGEQSLCSTIV 719

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG+    G  AA+ RY    ++ +  +I    D+  +++ 
Sbjct: 720 NLAQDFVGSNNINLLLPIGQFGSRLQGGKDAASPRYIFTSLSPLTRMIFNENDDAILNYL 779

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           +  N    EP  +    P +L NG  GI  G +TSIP+ N  ++ E    +I
Sbjct: 780 NDDNF-SIEPEFYVPIIPMVLVNGAEGIGTGWSTSIPNFNPVDVVENIRRMI 830


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI--VGEVIGKL--HPHGDQSVY 95
           ER+IP L DG KP  R+++         F  A KK  ++  +   +G++  + HG+ S+ 
Sbjct: 710 ERSIPSLVDGLKPGQRKVLFTC------FKRADKKEVKVAQLAGAVGEMSAYHHGEASLM 763

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G FG     G  +A+ RY   ++  V + +   VDE  
Sbjct: 764 ATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDESV 823

Query: 152 VDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           + F   Y E    EP  +    P +L NG  GI    +T +P++N +EI E
Sbjct: 824 LRF--LYEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVE 872


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 138 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 186

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 187 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 246

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 247 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 305

Query: 207 ID 208
           +D
Sbjct: 306 LD 307


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 14/208 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++++  +++R  + +  + ++++    R+IP + DG KP  R++I +  +  L    
Sbjct: 636 TFLDQSMSNITVRDFVNKELILFSMAD-NIRSIPSVIDGLKPGQRKVIFSCFKRNLKTEI 694

Query: 71  AFKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
              K A++VG V     + HG+ S+  +++ LA  FV      L+   G FG+  + G  
Sbjct: 695 ---KVAQLVGYVSEHSAYHHGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKD 751

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED--SEPVVFPSKFPNLLANGTSGI 183
           +A+ RY    +  ++ LI     E  +   ++  E++   EP  +    P +L NGT GI
Sbjct: 752 SASPRYIFTNLNPLSRLIFH---EHDIPILESQIEDNLVIEPTYYVPIIPMVLVNGTDGI 808

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPE 211
             G +T+IP+HN  ++ +    L++N E
Sbjct: 809 GTGWSTNIPNHNPLDLIKNIKRLLNNQE 836


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++   
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLL 60

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  
Sbjct: 61  EIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAA 120

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E F      G  R +       D +   + +I KE I + IS  G+++  K+
Sbjct: 121 IVEKF------GDDRCSKLVPFYGDMSI--EDLIAKEDIVLTISRSGYVKRTKT 166


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 116 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 164

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 165 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 224

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 225 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 283

Query: 207 ID 208
           +D
Sbjct: 284 LD 285


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R++++   +  L       K +R+ G V  +  + HG+ S+  ++V
Sbjct: 689 RSIPSVVDGLKPGQRKVVYYCFKRNL---VHETKVSRLAGYVASETAYHHGEVSMEQTIV 745

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G +A+A RY    ++ +A ++    D+  ++++
Sbjct: 746 NLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNYQ 805

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              N+E    EP  +    P +L NG  GI  G +T IP++N ++I 
Sbjct: 806 ---NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDIT 849


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 25/188 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 577 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 625

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 626 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHP 685

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI +    +
Sbjct: 686 LDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKM 744

Query: 207 IDNPEISI 214
           I+  E S+
Sbjct: 745 INGQEPSV 752


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 19/179 (10%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVI-GKLHPHGDQSVY 95
           +R+IP + DG KP  R+I+         F   F K A+I    G V     + HG+QS+ 
Sbjct: 695 QRSIPSMVDGLKPGQRKILFC------SFKRNFIKEAKIAQFSGYVSEHSAYHHGEQSLA 748

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ +AQ FV      L+   G FG  +  G   A+ RY   R++ +   +    D+  
Sbjct: 749 STIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDIL 808

Query: 152 VDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D+    NE+    EP  +    P +L NG+ GI  G ++SIP++N ++I      L++
Sbjct: 809 LDY---LNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLN 864


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R++++   +  L       K +R+ G V  +  + HG+ S+  ++V
Sbjct: 743 RSIPSVVDGLKPGQRKVVYYCFKRNL---VHETKVSRLAGYVASETAYHHGEVSMEQTIV 799

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G +A+A RY    ++ +A ++    D+  ++++
Sbjct: 800 NLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNYQ 859

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              N+E    EP  +    P +L NG  GI  G +T IP++N ++I 
Sbjct: 860 ---NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDIT 903


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 23/171 (13%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEVIGK-LHPHGDQ 92
           R+IP + DG KP  R++++            FK       K A++ G V  K  + HG+ 
Sbjct: 692 RSIPCMLDGLKPGQRKVLYT----------CFKRDDKREVKVAQLAGSVAEKSAYHHGEM 741

Query: 93  SVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
           S+  +++ LAQ +V      L+   G FG     G  +A+ RY    ++ +   I   +D
Sbjct: 742 SLCSTIINLAQNYVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSALTRHIFHPLD 801

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  ++++   N+   EPV +    P LL NG  GI  G AT IP+HN +++
Sbjct: 802 DPLLEYQYEDNQR-IEPVWYLPIIPMLLINGADGIGTGWATKIPNHNPRDV 851


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI--VGEVIGKL--HPHGDQSVY 95
           ER+IP L DG KP  R+++         F  A KK  ++  +   +G++  + HG+ S+ 
Sbjct: 710 ERSIPSLVDGLKPGQRKVLFTC------FKRADKKEVKVAQLAGAVGEMSAYHHGEASLM 763

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G FG     G  +A+ RY   ++  V + +   VDE  
Sbjct: 764 ATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDESV 823

Query: 152 VDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           + F   Y E    EP  +    P +L NG  GI    +T +P++N +EI E
Sbjct: 824 LRF--LYEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVE 872


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1221

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+II A+     +  A   + +  + E     H HG+ S+ +++++
Sbjct: 679 RALAHSVDGLKPSQRKIIWALMRRSGNEAAKVAQLSGYISEA-SAFH-HGETSLQETMIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   ++++VA L+    D+  +D+  
Sbjct: 737 MAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDY-I 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS--I 214
               +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  A+I        +
Sbjct: 796 VEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+II A+     +  A   + +  + E     H HG+ S+ +++++
Sbjct: 679 RALAHSVDGLKPSQRKIIWALMRRSGNEAAKVAQLSGYISEA-SAFH-HGETSLQETMIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   ++++VA L+    D+  +D+  
Sbjct: 737 MAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDY-I 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS--I 214
               +  EP  +    P LL NG+ GI  G A++IP  +  ++  A  A+I        +
Sbjct: 796 VEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 25/178 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL---------HPHGD 91
           R IP L D  KP  R+I+ A  E   +             E++ +L         +  G 
Sbjct: 29  RQIPQLIDSLKPSQRKILFAALEYNKE-------------EIVDRLGMFAAARTNYKSGG 75

Query: 92  QSVYDSLVRLAQ--PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +++  ++V +AQ  P     P     G FG+I G  A++ RY    ++ V   I +  DE
Sbjct: 76  ENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGRDASSARYISVAVSDVIRKIFRKEDE 135

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
             +++ +   EE  EP  F    P  L NG +GI  G +T  P H V+ +  A  AL+
Sbjct: 136 GILEY-NYLGEERLEPKFFLPILPMFLVNGINGIGTGYSTDTPCHCVKSVLSALRALL 192


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 19/170 (11%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV---GEVI-GKLHPHGDQSVY 95
           +R+IP + DG KP  R+I+         F   F K A+I    G V     + HG+QS+ 
Sbjct: 695 QRSIPSMVDGLKPGQRKILFC------SFKRNFIKEAKIAQFSGYVSEHSAYHHGEQSLA 748

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ +AQ FV      L+   G FG  +  G   A+ RY   R++ +   +    D+  
Sbjct: 749 STIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDIL 808

Query: 152 VDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +D+    NE+    EP  +    P +L NG+ GI  G ++SIP++N ++I
Sbjct: 809 LDY---LNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDI 855


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  ++V 
Sbjct: 717 RSIPCLVDGLKPGQRKVMFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEVSLCMTIVN 774

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+  +G FG     G  +A+ RY   +M+ +  +I    D    D+  
Sbjct: 775 LAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRYIFTKMSPLTRMIFNPSD----DYLL 830

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            +  ED+   EPV +    P +L NG  GI  G  T IP++N +E+ +   A++D  E
Sbjct: 831 KHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEE 888


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 25/188 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP  +    P +L NG  GI  G +T I +HN +EI      +
Sbjct: 801 LDDPLLDYQ-VDDGQKIEPQWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREIMNNLRKM 859

Query: 207 IDNPEISI 214
           I+  E  +
Sbjct: 860 INGEEPKV 867


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  ++V 
Sbjct: 717 RSIPCLVDGLKPGQRKVMFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEVSLCMTIVN 774

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+  +G FG     G  +A+ RY   +M+ +  +I    D    D+  
Sbjct: 775 LAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRYIFTKMSPLTRMIFNPSD----DYLL 830

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            +  ED+   EPV +    P +L NG  GI  G  T IP++N +E+ +   A++D  E
Sbjct: 831 KHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEE 888


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP++ DG KP  R+ +     +  D+    K S      +    + HG+QS+  ++++
Sbjct: 638 RSIPEMIDGLKPGQRKTL--FCSLARDWKTECKVSVLTAHAIDRSDYNHGEQSLASTIIK 695

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ +V      L+   G FG+    G  AA+ RY    ++     +    D+  + + D
Sbjct: 696 MAQDYVGSSNVNLLLPMGQFGSQIFGGQDAASARYLYTMISPATRALFHKDDDVLLAWMD 755

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
             N+   EP  +    P +L NG  GI  G +T +P ++ +++ +  + L+
Sbjct: 756 GDNQRMIEPKWYIPIIPTVLVNGCEGIGTGWSTFVPKYSTKDVIKNIMRLM 806


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 171/395 (43%), Gaps = 52/395 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K +S+   ++  + AYA +   +R IP + DG KP  R+IIH   E  +      K +A
Sbjct: 1   MKEISISQHIQGDHKAYA-TYDNQRNIPHIADGLKPSLRKIIHTAIET-MRGKEEVKVAA 58

Query: 77  RIVGEVIGKL--HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYT 132
             +G     L  + HG+ S+ D++V L + +      PL+  QG FG +  + A+  RY 
Sbjct: 59  --LGSRASDLTEYGHGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDNDASEPRYI 116

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
                       +  D   +DF+ +  +   EPV F    P +L N +SG+  G ++ I 
Sbjct: 117 HVSRHANLSHCFKEEDRAILDFQVSEGK-TIEPVFFLPPLPLVLINASSGVGNGYSSKIL 175

Query: 193 SHNVQEICEAALALID----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
             + Q + E + A+++    NPE S+         P FP  G     + +   SY +  G
Sbjct: 176 PRSPQALIEMSKAILNETPINPEWSL---------PHFP--GFKGRVKATGPCSYEI-HG 223

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIP----YQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             ++  +   E          + ++P    YQ ++ +  E +  L+ +K I   E    E
Sbjct: 224 AIQLNPKAKTE--------FTIIDLPPDSKYQYEQFKERE-LLPLLDSKTIKNFESDSTE 274

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKE 363
            A  ++ V   +  +  P+L+     +L     R   N+ V +  G++ +    + +L++
Sbjct: 275 QAWSIK-VQSTREFAQHPELVKRMGMIL-----RVTENLTVWTWDGQLKRYPTAEALLRD 328

Query: 364 WLA-------HRREVLFRRSSFRMQAIDRRVEILK 391
           WL         RR+    RS+  M  +  +VE LK
Sbjct: 329 WLVGREYYMEKRRQSEIARSTKEMNWLLVKVEFLK 363


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 126/255 (49%), Gaps = 14/255 (5%)

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPV 416
           +++ +L H+REVL RR+++ ++  + R  I+ GL+ A   +D++I  IR ++DK   K  
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ RF  TE Q +AI++L+L  L   +   +++E   L       + +L+S K+    + 
Sbjct: 61  LIERFDFTEIQAEAIVSLQLYRLTNTDITALENEAAALSRAIISYNKILSSSKELDKVMK 120

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLK 534
            E+ EVK+ ++        R T  +    +     + +I  E + V ++  G+I+  SL+
Sbjct: 121 KELAEVKKNYASP------RLTVIQDQIEELKIDTEVLIASEEVIVSVTKEGYIKRTSLR 174

Query: 535 SHSVDL-SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
           S+     + L  KEGD        +T + +L+ ++ G     P   +  L  +  GE + 
Sbjct: 175 SYGASKPNELGIKEGDYPLYIQQLNTLNHLLIFTSKGNIIYRPVNEISDLRWKDMGEHLS 234

Query: 592 LLIDLNHNQDIVTAF 606
             I  + ++ +V  F
Sbjct: 235 QNIAFSADETVVKVF 249


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 25/188 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI +    +
Sbjct: 801 LDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKM 859

Query: 207 IDNPEISI 214
           I+  E S+
Sbjct: 860 INGQEPSV 867


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 634 ERSIPSLVDGLKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 682

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 683 EQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLYPS 742

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 743 VDDNLLKFLYDDNQR-VEPEWYIPIIPLVLVNGAEGIGTGWACKLPNYDTREIVNNVKRM 801

Query: 207 ID 208
           +D
Sbjct: 802 LD 803


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 25/173 (14%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 695 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 743

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ +V      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 744 EVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 803

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +D+  +D++ T + +  EP+ +    P +L NG  GI  G +T I +HN +EI
Sbjct: 804 LDDPLLDYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREI 855


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 25/188 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP  +    P +L NG  GI  G +T I +HN +EI      +
Sbjct: 801 LDDPLLDYQ-VDDGQKIEPQWYLPIIPMVLVNGAEGIGTGWSTKISNHNPREIMSNLRKM 859

Query: 207 IDNPEISI 214
           I+  E  +
Sbjct: 860 INGEEPKV 867


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +
Sbjct: 801 LDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKM 859

Query: 207 IDNPE 211
           I+  E
Sbjct: 860 INGQE 864


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 154/353 (43%), Gaps = 43/353 (12%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
            +R+IP L DG KP  R+I+  +    +D     K S ++ G V  +  + HG++S+  ++
Sbjct: 719  KRSIPSLIDGLKPSQRKILWTLLN-NMDESTEIKVS-QLAGAVAHRQSYHHGEESLVRTI 776

Query: 99   VRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            +R+ Q F      PL+   G FG  +  G+ AA+ RY    +     L+    D+D +  
Sbjct: 777  IRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQ- 835

Query: 155  RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
                N E+    EP       P +L NGT GI  G +T I + N  +I +     ID+  
Sbjct: 836  ---KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDS-- 890

Query: 212  ISIEKLLEYIIGPDFPT--GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            IS     EY I P +    G + V +    + S ++      +R     E     ++ I 
Sbjct: 891  IST----EYEIPPFYEEFRGKLEVVTPTKFISSGKIQ----LIRP----ERKNASTFSIE 938

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIRDESAEDVRIVLFPKNRSL-----DP 322
            + E+P  +  S+  EK+++++  + +P+LE  +   E     RI L  K  S      + 
Sbjct: 939  IVELPIGIWTSKYKEKLSKIV--ETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNS 996

Query: 323  DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            DLL       S  E R   + N    G + +   +  I  E+   RR++  +R
Sbjct: 997  DLLNYFKLRTSLTENRVLFDRN----GELKEFGNISEIAAEFFEVRRDLYEKR 1045


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 25/178 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL---------HPHGD 91
           R IP L D  KP  R+I+ A  E   +             E++ +L         +  G 
Sbjct: 29  RQIPQLIDSLKPSQRKILFAALEYNKE-------------EIVDRLGMFAAARTNYKSGG 75

Query: 92  QSVYDSLVRLAQ--PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +++  ++V +AQ  P     P     G FG+I G  A + RY    +++V   I +  D+
Sbjct: 76  ENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGREAPSARYISVAVSEVIRKIFRKEDD 135

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
             +++ +   EE  EP  F    P  L NG +GI  G AT  P H V+ +  A  AL+
Sbjct: 136 GILEY-NYLGEEKLEPKFFLPILPMFLVNGINGIGSGYATDPPCHCVKSVLSALRALL 192


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
           [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
           [Cryptosporidium muris RN66]
          Length = 1645

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP++ DG KP  R++++++ +  L+      + A  V E     + HG+ S+  ++V 
Sbjct: 826 RSIPNVIDGLKPGQRKVLYSVFKKKLNNEMKVAQLAGYVAE--HSAYHHGEASLQSTIVN 883

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG+    G  A+A RY   +++     I    D+  +    
Sbjct: 884 MAQDFVGSNNLNLLQPCGQFGSRKEGGKDASAARYIFTKLSTWTRYIFPEADDPLL---- 939

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            Y ++D    EP+ +    P +L NG  GI  G + S+P++N ++I
Sbjct: 940 IYLQDDGQQIEPLFYVPIIPMVLVNGADGIGTGWSCSVPNYNPKDI 985


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  ++V
Sbjct: 751 ERSIPCLVDGLKPGQRKVLFCCFKRNDKREVKVAQLAGSVAEMSA--YHHGEVSLMMTIV 808

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   VD++ +   
Sbjct: 809 GLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSSLARLVFPPVDDNLL--- 865

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
             YN +D+   EP  +    P +L NG  GI  G A+ IP+++++EI
Sbjct: 866 -KYNYDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWASKIPNYDIREI 911


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 47/69 (68%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +     
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 111 LISGQGNFG 119
           L+   GN G
Sbjct: 61  LVEMHGNNG 69


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial;
           Short=DNA topoisomerase II; Flags: Precursor
          Length = 1054

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 154/353 (43%), Gaps = 43/353 (12%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
           +R+IP L DG KP  R+I+  +    +D     K S ++ G V  +  + HG++S+  ++
Sbjct: 603 KRSIPSLIDGLKPSQRKILWTLLN-NMDESTEIKVS-QLAGAVAHRQSYHHGEESLVRTI 660

Query: 99  VRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           +R+ Q F      PL+   G FG  +  G+ AA+ RY    +     L+    D+D +  
Sbjct: 661 IRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQ- 719

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
               N E+    EP       P +L NGT GI  G +T I + N  +I +     ID+  
Sbjct: 720 ---KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDS-- 774

Query: 212 ISIEKLLEYIIGPDFPT--GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           IS     EY I P +    G + V +    + S ++      +R     E     ++ I 
Sbjct: 775 IST----EYEIPPFYEEFRGKLEVVTPTKFISSGKIQ----LIRP----ERKNASTFSIE 822

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIRDESAEDVRIVLFPKNRSL-----DP 322
           + E+P  +  S+  EK+++++  + +P+LE  +   E     RI L  K  S      + 
Sbjct: 823 IVELPIGIWTSKYKEKLSKIV--ETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNS 880

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           DLL       S  E R   + N    G + +   +  I  E+   RR++  +R
Sbjct: 881 DLLNYFKLRTSLTENRVLFDRN----GELKEFGNISEIAAEFFEVRRDLYEKR 929


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|332643306|gb|AEE76827.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1438

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 165/392 (42%), Gaps = 61/392 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI---VGEVIGKL-----HPHGD 91
            +R+IP + DG KP  R+I+            AFKK AR    V +++G +     + HG+
Sbjct: 701  QRSIPSMVDGLKPGQRKILFV----------AFKKIARKEMKVAQLVGYVSLLSAYHHGE 750

Query: 92   QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
            QS+  +++ +AQ +V      L+   G FG     G  +A+ RY   +++ V  ++    
Sbjct: 751  QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFP-- 808

Query: 148  DEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +D     D  NE+    EP  +    P +L NG  GI  G +T IP++N +EI      
Sbjct: 809  -KDDDLLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRR 867

Query: 206  LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            L++          E ++  D    G      +  +E      GG         EEV   +
Sbjct: 868  LLNG---------ESMVPMDPWYRGF-----KGTIEKTASKEGGCTYTITGLYEEVDETT 913

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
              I +TE+P +         +  L      P  +D++  + E          +S+D DL+
Sbjct: 914  --IRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDE----------KSVDFDLI 961

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD--GILKEWLAHRREVLFRRSSFRMQAI 383
            +    ML+  +  F     + +      +   D  G++K+++    ++L      R +  
Sbjct: 962  LSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTP-EQILEEFFDLRFEYY 1020

Query: 384  DRRVE-ILKGLLIAYLNIDE----IIAIIRNE 410
            ++R E ++K + I  L ++     I+A++  E
Sbjct: 1021 EKRKETVVKNMEIELLKLENKARFILAVLSGE 1052


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  +++
Sbjct: 710 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEISLMMTII 767

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   +D++ + F 
Sbjct: 768 NLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKFM 827

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
              N++  EP  +    P +L NG  GI  G +  +P+++ +EI      ++D  E
Sbjct: 828 YDDNQK-VEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDE 882


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
 gi|332643305|gb|AEE76826.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 61/392 (15%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI---VGEVIGKL-----HPHGD 91
            +R+IP + DG KP  R+I+            AFKK AR    V +++G +     + HG+
Sbjct: 701  QRSIPSMVDGLKPGQRKILFV----------AFKKIARKEMKVAQLVGYVSLLSAYHHGE 750

Query: 92   QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
            QS+  +++ +AQ +V      L+   G FG     G  +A+ RY   +++ V  ++    
Sbjct: 751  QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFP-- 808

Query: 148  DEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +D     D  NE+    EP  +    P +L NG  GI  G +T IP++N +EI      
Sbjct: 809  -KDDDLLLDYLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRR 867

Query: 206  LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            L++          E ++  D    G      +  +E      GG         EEV   +
Sbjct: 868  LLNG---------ESMVPMDPWYRGF-----KGTIEKTASKEGGCTYTITGLYEEVDETT 913

Query: 266  WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
              I +TE+P +         +  L      P  +D++           +   +S+D DL+
Sbjct: 914  --IRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVK----------AYNDEKSVDFDLI 961

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD--GILKEWLAHRREVLFRRSSFRMQAI 383
            +    ML+  +  F     + +      +   D  G++K+++    ++L      R +  
Sbjct: 962  LSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTP-EQILEEFFDLRFEYY 1020

Query: 384  DRRVE-ILKGLLIAYLNIDE----IIAIIRNE 410
            ++R E ++K + I  L ++     I+A++  E
Sbjct: 1021 EKRKETVVKNMEIELLKLENKARFILAVLSGE 1052


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 13/179 (7%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +R++P + DG K   R+++ A  +  L       + A    E     + HG+ S++ ++V
Sbjct: 685 QRSLPSVVDGLKISQRKVLFACMKRKLTSEVKVAQLAGYCSEHTA--YHHGEASLHSTIV 742

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV  +  PL+   G FG     G  AA+ RY    + +   L+    +ED    R
Sbjct: 743 NMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFTLLQKHTRLVFP--EEDDALLR 800

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             Y ++D    EPV +    P LL NG  GI  G ++SIP H+   + +  L L+D  E
Sbjct: 801 --YADDDGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVLVIDNLLKLLDAEE 857


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 11/177 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R+++ +  +  L       + +  V E     + HG+ S+  ++V 
Sbjct: 724 RSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSGYVSE--HSAYHHGEASLASTIVG 781

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G   A+ RY   R+  +   I    D+  +D+  
Sbjct: 782 LAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLAPICRAIFPEADDALLDY-- 839

Query: 157 TYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             NE+    EP  +    P +L NG  GI  G +TSIP++N +++ +    L+++ E
Sbjct: 840 -INEDGQVIEPDYYLPILPLVLVNGADGIGTGWSTSIPNYNPRDLTDNIRRLLNDEE 895


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +G  HPHG+ S+Y++LVR+AQP+  RYPL++GQGNFG+   +  AA RY 
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRYC 50


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+    DG KP  R+II A+     +  A   + +  + E     H HG+ S+ +++++
Sbjct: 679 RALAHSVDGLKPSQRKIIWALMRRSGNEAAKVAQLSGYISEA-SAFH-HGETSLQETMIK 736

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ F       L+  +G FG+    G+  AA RY   ++++VA L+    D+  +D+  
Sbjct: 737 MAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDY-I 795

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEISI 214
               +  EP  +    P LL NG+ GI  G +++IP  +  ++  A  A+I  +  +  +
Sbjct: 796 VEEGQQVEPNHYVPILPLLLCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERAKSVV 855

Query: 215 EKLLEYIIG 223
            +L+ + +G
Sbjct: 856 RRLVPWAVG 864


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 20/231 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG---EV 82
           + ER + +++     R+IP L DG K   R++++A+ +  L + +   K  ++ G   E 
Sbjct: 113 INERMIHFSIDDCG-RSIPHLLDGLKESQRKVLYAVFKKKLSYKSKTLKVNQLAGFTAEH 171

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQR--YPLISGQGNFGN-ID-GDSAAAYRYTEARMTQ 138
            G  + HG+Q +YD+++ LA   + +   P +   G FG+ +D G  A+A RY   +   
Sbjct: 172 TG--YHHGEQCLYDTIINLATDIMGKNNIPYLYRDGQFGSRLDGGKDASAGRYIFTKEDM 229

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQ 197
           +   +    D++ +  R+T + E  EP  +    P  L NG  +GI  G + S+P +N  
Sbjct: 230 LTRKLFIPSDDNLLP-RNTDDGEPVEPRFYVPIIPTALVNGCQAGIGTGWSCSLPLYNPL 288

Query: 198 EICEAALALIDN---PEIS-----IEKLLEYIIGPDFPTGGIIVESRESIV 240
           ++  +    I N   PE+S      + ++  I    F T G++    +++ 
Sbjct: 289 DLVSSCKKWIKNQTLPELSPWYRGFKGVITRISPTKFSTSGLMERKNDTVT 339


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 13/172 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++H   +  L       + +  + E +  L+ HG+QS+  +++ 
Sbjct: 706 RSIPSMIDGLKPSQRKVLHGCIQRNLTKEIKVVQLSGYISESV--LYHHGEQSLNQTIIS 763

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV       +   G FG   + G  +A+ RY    +  + + + +  +ED+     
Sbjct: 764 MAQDFVGSNNMNFLVPNGQFGTRLMGGKDSASPRYIYTYLHPITKHVFR--EEDSALLPS 821

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              EE+    EP  +    P +L NG  GI  G +T++ +HN  E+ +A +A
Sbjct: 822 --QEEEGVHIEPSYYLPILPTVLVNGAVGIGTGWSTNVCNHNPIEVADALIA 871


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI---VGEVIGK-LHPHGDQSVYD 96
           R+IP + DG KP  R++I         F   FKK  ++   VG V  K ++ HG+QS+  
Sbjct: 55  RSIPSVADGLKPGQRKVIWGC------FKRNFKKEIKVMQLVGYVSEKAVYHHGEQSLMM 108

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV      L+   G +G  D  G   A+ RY     + +A  I    D+D +
Sbjct: 109 TIVNLAQDFVGSNNINLLMPNGQYGTRDQGGKDHASARYINTLPSLMARTIFHQ-DDDVL 167

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
                      EP  +    P +L NG  GI  G +T+IP +N ++I +    L++  E+
Sbjct: 168 LTPQKDENHIIEPEWYMPVLPMVLINGAEGIGTGWSTNIPCYNPRDIVDNLKRLMNGEEV 227


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 17/178 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSV 94
           ER+IP++ DG K  HR+ +++       F    KK  + V ++IG +     + HG+ S+
Sbjct: 768 ERSIPNIVDGLKTSHRKTLYSC------FKRNLKKEIK-VAQLIGYVSEHSAYHHGEASL 820

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           Y ++V +AQ FV      L++  G++G     G   ++ RY   R+  +A  +    D+D
Sbjct: 821 YSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHA-DDD 879

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +      + +  +P  +    P +L NG  GI  G +++IP++N +++ +     ID
Sbjct: 880 PILSCVVDDGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAID 937


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 116/267 (43%), Gaps = 47/267 (17%)

Query: 12  LVEENVKAVSLR-FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           L E++ +AVS   F   E  L      I  R+IP++ DG KP  R+++         F  
Sbjct: 678 LYEKDTRAVSFSDFINVELVLFSNYDNI--RSIPNMMDGLKPGQRKVLFTC------FKR 729

Query: 71  AFKKSARI--VGEVIGK--LHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--ID 122
             K+  ++  +G  + +   + HG+ S+  ++V LAQ FV      L+   G FG     
Sbjct: 730 NDKREVKVAQLGASVAEHSAYHHGEMSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAG 789

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTS 181
           G  +A+ RY    ++ +A  I    D+  +  +  Y++    EP  +    P +L NG  
Sbjct: 790 GKDSASPRYIFTMLSPLARYIFHKHDDPLL--KHEYDDNQKIEPTYYVPIIPMVLVNGAD 847

Query: 182 GIAVGMATSIPSHNVQEICEAALALID------------NPEISIEKLLEY--------- 220
           GI  G  T IP++N +EI E    ++D            N + +IE   +Y         
Sbjct: 848 GIGTGWMTKIPNYNPREIIENLQRMMDGADPRPMSPFYKNFKGTIESCGDYRYVISGEIS 907

Query: 221 IIGPD------FPTGGIIVESRESIVE 241
           IIGPD       P G      +E+++E
Sbjct: 908 IIGPDKVEITELPIGTWTQAYKETVLE 934


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1089

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAM----SEMGLDFGAAFKKS--ARIVGEVIG 84
           L +A   I ER+IP L DGF+   R++++++     E  ++F    K +  A  V E   
Sbjct: 642 LIFAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIKVTQLASYVSEHAA 701

Query: 85  KLHPHGDQSVYDSLVRLAQPFV--------QRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             H H ++S+  +++R+AQ FV        Q + L   + + G  D D+    RY    +
Sbjct: 702 --HHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDVDA----RYIHTLL 755

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +  L++   D+D +++ + +  +   P  F    P +L NG+  + +G    IPS++
Sbjct: 756 SSITRLLIHKDDDDILEYHNVFGRK-RHPECFLPIMPMVLVNGSQSVGMGWNRFIPSYD 813


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
           180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+Q++  ++V
Sbjct: 732 ERSIPSLVDGLKPGQRKVLFTCVKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIV 789

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      ++   G FG     G  AA+ RY    ++ +A+L+   VD   + F 
Sbjct: 790 NLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSSLLKFL 849

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              N++  EP  +    P +L NG  GI  G A  IP+++ +EI
Sbjct: 850 YDDNQK-VEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREI 892


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  +D++   + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +
Sbjct: 801 LDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKM 859

Query: 207 IDNPE 211
           I+  E
Sbjct: 860 INGQE 864


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 11/175 (6%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP++ DG KP  R+I+ A  +  L       + +  V E     + HG+ S+  ++V
Sbjct: 692 ERSIPNMVDGLKPGQRKIMFACFKRNLKTDVKVSQLSGYVSE--HSAYHHGEASLSGTIV 749

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV       +  QG FG     G  AA+ RY   R+  +   +    D+  + + 
Sbjct: 750 GLAQDFVGSNNVNYLVPQGQFGTRLQGGKDAASPRYIFTRLAPLTRHLFNEHDDRLLAY- 808

Query: 156 DTYNEEDS--EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
              NEE    EP  +    P +L NG  GI  G +TSIP+ N ++I      ++D
Sbjct: 809 --LNEEGQSIEPEWYMPVVPTVLVNGAEGIGTGWSTSIPNFNPRDIVANLRLMLD 861


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E 
Sbjct: 3   EVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDEL 62

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F
Sbjct: 63  QANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRTIVSEELAAIVDKF 122

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                   RR+        D     + +I +E I V IS  G+++  K+
Sbjct: 123 GDD-----RRSALVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKT 163


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 7/163 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R+++ +  +  L       + +  V E     + HG+ S+  ++V 
Sbjct: 720 RSIPSMVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSGYVSE--HSAYHHGEASLAMTIVN 777

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G   A+ RY   R+ ++   I    D+  +++ D
Sbjct: 778 LAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIFTRLHEICRAIFPECDDALLNYLD 837

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
             + +  EP  +    P +L NG  GI  G +TSIP+ N ++I
Sbjct: 838 E-DGQRIEPDFYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDI 879


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R+++ +  +  L       + +  V E     + HG+ S+  ++V 
Sbjct: 724 RSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSGYVSE--HSAYHHGEASLASTIVG 781

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G   A+ RY   R+  +  +I    D+  +D+ D
Sbjct: 782 LAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLAPICRVIFPECDDALLDYLD 841

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
               ED    EP  +    P +L NG  GI  G +TSIP+ N ++I      ++D+
Sbjct: 842 ----EDGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPNFNPRDIVANIRRILDD 893


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 46/67 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +M++ G  F   F+KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 118 FGNIDGD 124
            G++DGD
Sbjct: 61  NGSMDGD 67


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
          V  +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD    F
Sbjct: 6  VTGDIRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPSGGF 65

Query: 73 K 73
          +
Sbjct: 66 R 66


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1272

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R+++    +  L       K A++ G V  K  + HG+ S+  ++V
Sbjct: 785 RSIPSVADGLKPGQRKVLFGCFKRNL---TKEIKVAQLAGYVSEKTAYHHGEASLTSTIV 841

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    + ++   I    D+  ++  
Sbjct: 842 GLAQNFVGSNNINLLDPNGQFGTRLAGGKDAASARYIFTNLPRMTRAIFHPADDGLLN-- 899

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
             Y  ED    EP  F    P +L NG  GI  G +T+IP++N  +I E
Sbjct: 900 --YLVEDGMSIEPDYFMPTVPMVLINGADGIGTGWSTAIPNYNPVDIVE 946


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 25/182 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 731 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 779

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + ++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   
Sbjct: 780 EVTLMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPA 839

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 840 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 898

Query: 207 ID 208
           +D
Sbjct: 899 LD 900


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++I+ M +  L   A  ++ A  + E     + HG+ S+  +++ 
Sbjct: 741 RSIPSVVDGLKPGQRKVIYGMFKKNLKNEAKVEQLAGYISEQTA--YHHGETSLQQTIIG 798

Query: 101 LAQPFV--QRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LA  FV      L+  +G FG+    G  AA  RY     +++A L+    D+  +++  
Sbjct: 799 LAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIFTMPSRMARLLFDKRDDPILNY-- 856

Query: 157 TYNEED--SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
             N+E    EP  +    P LL NG  GI  G +T IP+ N  ++ +    LI N
Sbjct: 857 -LNDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFNPSDLVKNIRHLIKN 910


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 123/271 (45%), Gaps = 41/271 (15%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++  K V     + +  + ++++ + +R+IP + DG KP  R+I+         F  
Sbjct: 661 TYIDQQEKRVRYSDFINKELILFSMADL-QRSIPSMVDGLKPGQRKILFC------SFKR 713

Query: 71  AFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
            F K A+ V +  G +     + HG+QS+  +++ +AQ FV      L+   G FG    
Sbjct: 714 NFVKEAK-VAQFSGYVSEHSAYHHGEQSLASTIIGMAQNFVGSNNINLMFPGGQFGTRAQ 772

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANG 179
            G  AA+ RY   +++ +   I    D+  +++    NE+    EP  +    P +L NG
Sbjct: 773 GGKDAASPRYIFTKLSHITRSIFPKDDDILLNY---LNEDGQSIEPTWYMPILPMVLVNG 829

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEI------------SIEKLLEY-IIGPDF 226
           + GI  G +T IP++N ++I      L++                SIEK +   ++G  +
Sbjct: 830 SEGIGTGWSTFIPNYNPRDIVANLRRLLNEESTVPMHPWYRGFKGSIEKTVNTKVVGSTY 889

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWC 257
              GII      +V++ RL      +R RW 
Sbjct: 890 TVTGII-----EVVDNSRLRITELPIR-RWT 914


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 169/397 (42%), Gaps = 52/397 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            ER+IP + DG KP  R+++    +  L       + A  V E+    + HG+QS+  +++
Sbjct: 715  ERSIPSVVDGLKPGQRKVLFTCLKRNLIREIKVAQLAGSVAELSA--YHHGEQSLMSTII 772

Query: 100  RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
             LAQ FV      L+   G FG     G  AA+ RY    +  +  LI    D+  +++ 
Sbjct: 773  GLAQNFVGSNNLNLLQPIGQFGTRLSGGKDAASPRYIFTALNSLTRLIFHLEDDPLLNYL 832

Query: 156  DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
               N+   EP  +    P +L NG  GI  G AT I ++NV EI      ++D  E    
Sbjct: 833  YDDNQR-IEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDGEE---- 887

Query: 216  KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG-RGSWCIVVTEIP 274
                + + P+F      +E          LG   +      C  EV       + +TE+P
Sbjct: 888  ---PHRMLPNFRGFTGTIED---------LGSNRYV-----CYGEVAVLDDDTLEITELP 930

Query: 275  YQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
             +V      E + E ++  ++++P       E   DV +    K   + P+ L E+    
Sbjct: 931  IRVWTQNYKESVLEPMLNGSEKVPACITDYKEYHTDVTVRFVIK---MSPEKLREA--ES 985

Query: 333  SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF--RMQAIDRRVEIL 390
            + +   F L   V+S G +    PL G LK    +  E++  R  +  R+   ++R   L
Sbjct: 986  TGLHKFFKL-QTVMSTGSMVCFDPL-GCLK---CYPNEIIIIREFYELRLTWYEKRKVYL 1040

Query: 391  KGLLIAYLN---------IDEIIAIIRNEDKPKPVMV 418
            +G+L A            +++I +I+  E+KPK  ++
Sbjct: 1041 EGVLSAEARKLENQARFVLEKIQSIMVIENKPKKELI 1077


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP + DG KP  R+++    +          + A  V E+    + HG+ S+  ++V
Sbjct: 711 ERSIPCMVDGLKPGQRKVVFCCFKRNDKREVKVAQLAGSVAEMSA--YHHGEVSLMMTIV 768

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   VD++ +   
Sbjct: 769 GLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLL--- 825

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
             YN +D+   EP  +    P +LANG  GI  G A+ IP+++V+EI
Sbjct: 826 -KYNYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREI 871


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD +VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
          Length = 1448

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 194/449 (43%), Gaps = 48/449 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ K VS    + +  + ++ +   ER+IP + DG KP  R+++    +    +   
Sbjct: 711  LYQKDTKKVSYNEFINKELVLFS-NADNERSIPSMVDGLKPGQRKVLFTCFKK---YEKK 766

Query: 72   FKKSARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDS 125
              K A++ G V  +   H HG+QS+  +++ LAQ FV      L+   G FG     G  
Sbjct: 767  EIKVAQMAGAVSELSAYH-HGEQSLMSTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKD 825

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY   +++ +A L+    D+  + +    N+   EP  +    P +L NG+ GI  
Sbjct: 826  AASARYIFTQLSPLARLVFPHHDDPLLSYMYDDNQR-IEPEFYAPIIPMVLINGSEGIGT 884

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G +T I +++++E+      L+   E            P  P+     ++ +  +E +  
Sbjct: 885  GWSTRICNYDIREVVANVRRLLAGDEPV----------PMLPS----YKNFKGTIEEFEP 930

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA---KRIPLLEDIR 302
             R  F V     V +       + +TE+P +V      E + E ++    K  P + D +
Sbjct: 931  NR--FAVNGEISVVDDN----SVEITELPIRVWTQNYKESVLENMVYGTDKVKPSISDYK 984

Query: 303  DESAEDVRIVLFPKNRSLDPDLLM----ESIFMLSDMETRFP-LNMNVL--SMGRVPQVM 355
             E   D  +    K   ++ D L+    E +  +  ++T F   N+ VL    G + +  
Sbjct: 985  -EYHTDTTVKFVVK---MNEDRLLRGEEEGLHKMFKLQTTFSQANLMVLYDRHGCIRRYD 1040

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             ++ IL+E+   R E+  +R ++    ++     L     A   +++I   +  E+K K 
Sbjct: 1041 NVEEILREFFTLRMELYHKRKAYLEGILEAESSKLNNQ--ARFIMEKIDGKVVIENKSKS 1098

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
             M+S+ +      D +   +    + +EE
Sbjct: 1099 SMISQLTSRGYDSDPVKAWKEAQQKSVEE 1127


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++ +  +  L       + A  V E     + HG+ S+  ++V 
Sbjct: 732 RSIPSIMDGLKPGQRKVLFSCFKRKLKDEIKVAQLAGYVSE--HSAYHHGEMSLAGTIVG 789

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG     G  AA+ RY    ++ +A  I    D+  ++   
Sbjct: 790 MAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASSRYIFTSLSPLARKIFHLADDALLN--- 846

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            + E+D    EP  +    P +L NG+ GI  G ++S+P++N +++  A +A+I+  E
Sbjct: 847 -HLEDDGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQE 903


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 95/193 (49%), Gaps = 8/193 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++  + ++    + +  + ++L+ +  R++P + DG KP  R+I+ A  +      A
Sbjct: 484 TFLDQTQRVITYSDFINKELILFSLADLA-RSVPSMVDGLKPGQRKILFAAFKRNFTSQA 542

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSA 126
              + +  V E     + HG+QS+  +++ +AQ FV      +++  G FG  +  G   
Sbjct: 543 KVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDH 600

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI  G
Sbjct: 601 ASARYIYTSLTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTG 659

Query: 187 MATSIPSHNVQEI 199
            +T +P++N ++I
Sbjct: 660 WSTFVPNYNPRDI 672


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DG KP  R+++    +  L       K A++ G V  K  + HG+ S+  ++V
Sbjct: 784 RSIPSVADGLKPGQRKVLFGCFKRNL---TKEIKVAQLAGYVSEKTAYHHGEASLTSTIV 840

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    + ++   I    D+  ++  
Sbjct: 841 GLAQNFVGSNNINLLDPNGQFGTRLAGGKDAASARYIFTNLPRMTRAIFHPADDGLLN-- 898

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
             Y  ED    EP  F    P +L NG  GI  G +T+IP++N  +I E
Sbjct: 899 --YLIEDGMSIEPDYFMPTVPMVLINGADGIGTGWSTAIPNYNPVDIVE 945


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++ +  +  L       + A  V E     + HG+ S+  ++V 
Sbjct: 698 RSIPSIMDGLKPGQRKVLFSCFKRKLKDEIKVAQLAGYVSE--HSAYHHGEMSLAGTIVG 755

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+   G FG     G  AA+ RY    ++ +A  I    D+  ++   
Sbjct: 756 MAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASSRYIFTSLSPLARKIFHLADDALLN--- 812

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
            + E+D    EP  +    P +L NG+ GI  G ++S+P++N +++  A +A+I+  E
Sbjct: 813 -HLEDDGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQE 869


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 26/182 (14%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DGFKP  R+++             FK++       A++ G V  +   H HG
Sbjct: 728 ERSIPSLVDGFKPGQRKVLF----------TCFKRNDKREVKVAQLAGSVAEMSAYH-HG 776

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           +Q++  ++V LAQ FV      L+   G FG     G  AA+ RY    ++ +A L    
Sbjct: 777 EQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARL-FPA 835

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G A  +P+++ +EI      +
Sbjct: 836 VDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRM 894

Query: 207 ID 208
           +D
Sbjct: 895 LD 896


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent
           virus]
          Length = 1113

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R++    DGFK   R+II+A+ +        F K A++ G V  +  + HG+Q++ +++V
Sbjct: 694 RSLASCIDGFKESQRKIIYAVRKKFRSNSTEFIKVAQLSGYVAEQTDYKHGEQNLCETIV 753

Query: 100 RLAQPFV--QRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           + AQ FV      L+   G FG     G  +AA RY   +  ++   I +  D+  ++  
Sbjct: 754 KFAQDFVGANNVQLLEPDGQFGTRLEGGKDSAAPRYIYTKPHKILPYIFREEDDPILE-- 811

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
                 + EPV F    P +L NG+ GI  G +  +P +N  E+
Sbjct: 812 ---QSSEGEPVHFVPIIPLVLVNGSVGIGTGWSCFVPQYNPLEL 852


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 170/378 (44%), Gaps = 57/378 (15%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSL 98
           +R+IP + DG KP  R+I+ +  +  L       K  ++ G V  +  + HG+QS+  ++
Sbjct: 410 QRSIPSMVDGLKPAQRKILFSCFKRNL---VKDLKVVQLQGYVSEQSAYHHGEQSLQSTI 466

Query: 99  VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V +AQ FV      L++ +G FG     G   A+ RY    ++ +   +    D+  +D 
Sbjct: 467 VGMAQNFVGSNNINLLAPKGQFGTRCSGGKDHASPRYIYTCLSPITRFLFPKDDDCLLD- 525

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
              Y +ED    EP  +    P +L NG  GI  G +T IP++N ++I  A L    N E
Sbjct: 526 ---YLQEDGLSIEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIV-ANLRRFLNGE 581

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
             +E +  +  G      G I +S      + + G G + V     +EEV   +  + +T
Sbjct: 582 -KMEPMHPWYKG----FKGTIEKS------ASKEGGGSYAVNG--IIEEVNETT--VRIT 626

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           E+P +    R  ++  + + +    ++E++RDE     +       R    D+ +    +
Sbjct: 627 ELPIR----RWTDEYKDFLNS----VIENVRDEKGNLPKDAFIKDFRKYGDDVSVCFEVL 678

Query: 332 LSDME----------TRFPL-------NMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
           LS+ +           +F L       NM++    G + +    + IL+E++  R E+  
Sbjct: 679 LSEEKMKQVKDEGLLKKFKLATTISTSNMHLFDPKGVIKKYDSPEEILEEFVHLRFELYE 738

Query: 374 RRSSFRMQAIDRRVEILK 391
           +R +F++ +++    IL+
Sbjct: 739 KRKNFKLASLEMEALILE 756


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++  + ++    + +  + ++L+ +  R++P + DG KP  R+I+ A  +      A
Sbjct: 655 TFLDQTQRVITYSDFINKELILFSLADLA-RSVPSMVDGLKPGQRKILFAAFKRNFTSQA 713

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSA 126
              + +  V E     + HG+QS+  +++ +AQ FV      +++  G FG  +  G   
Sbjct: 714 KVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDH 771

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI  G
Sbjct: 772 ASARYIYTSLTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTG 830

Query: 187 MATSIPSHNVQEIC 200
            +T +P++N ++I 
Sbjct: 831 WSTFVPNYNPRDIV 844


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++  + ++    + +  + ++L+ +  R++P + DG KP  R+I+ A  +      A
Sbjct: 655 TFLDQTQRVITYSDFINKELILFSLADLA-RSVPSMVDGLKPGQRKILFAAFKRNFTSQA 713

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSA 126
              + +  V E     + HG+QS+  +++ +AQ FV      +++  G FG  +  G   
Sbjct: 714 KVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDH 771

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI  G
Sbjct: 772 ASARYIYTSLTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTG 830

Query: 187 MATSIPSHNVQEIC 200
            +T +P++N ++I 
Sbjct: 831 WSTFVPNYNPRDIV 844


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP L DG KP  R+++    +          + A  V E+    + HG+ S+  +++
Sbjct: 710 ERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEISLMMTII 767

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   +D++ + F 
Sbjct: 768 NLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKFM 827

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
              N++  EP  +    P +L NG  GI  G +  +P+++ +EI      ++D  E
Sbjct: 828 YDDNQK-VEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDE 882


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP + DG KP  R+++    +          + A  V E+    + HG+ S+  ++V
Sbjct: 711 ERSIPCMVDGLKPGQRKVVFCCFKRNDKREVKVAQLAGSVAEMSA--YHHGEVSLMMTIV 768

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   VD++ +   
Sbjct: 769 GLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLL--- 825

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
             YN +D    EP  +    P +LANG  GI  G A+ IP ++V+EI      +I+  E
Sbjct: 826 -KYNYDDYLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEE 883


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS---ARIVGEV--IGKLHPHGDQSVY 95
           R+IP L DG KP  R+++         F    KK    A++ G V  +   H HG+ S+ 
Sbjct: 702 RSIPSLMDGLKPGQRKVLFTC------FKRNDKKDIKVAQLAGSVAEMSAYH-HGEASLM 754

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ FV      L+   G FG     G  +A+ RY    ++ VA  +    DE  
Sbjct: 755 GTIINLAQNFVGSNNINLLQPIGQFGTRLHGGKDSASARYIFTMLSPVARYMFDQKDEPL 814

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++    Y  ED+   EP  +    P +L NG  GI  G +T IP++N +EI +
Sbjct: 815 LE----YQFEDNLRIEPDWYAPLIPVVLVNGAEGIGTGYSTRIPNYNPREIVD 863


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 748 ERSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKGAQLAGSVAEMSSYH-HG 796

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 797 EASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 856

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E       L
Sbjct: 857 VDDNVLRFLYDDNQR-VEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCL 915

Query: 207 IDNPE 211
           +D  E
Sbjct: 916 LDGKE 920


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++I +  +  L       +    V E     + HGDQ++  ++V 
Sbjct: 671 RSIPSVVDGLKPGQRKVIFSCFKRKLKTEIKVHQLQGYVSE--HSAYHHGDQALTMTIVG 728

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ F       L+   G FG+  + G  AA+ RY    + ++  L+    DE  ++   
Sbjct: 729 LAQDFCGSNNVNLLMPNGQFGSRSMGGKDAASARYIFTAVPRITRLMFHADDEPLLN--- 785

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            Y E+D    EP  +    P +L NG  GI  G +T +P++N +E+ +
Sbjct: 786 -YLEDDGQSIEPEWYAPVVPQVLLNGAEGIGTGWSTFVPNYNPREVVD 832


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 32/189 (16%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK--------KSARIVGEVIGKL-HPHGD 91
           R+IP L DG KP  R++I         FG+ FK        K   +   V G+  + H +
Sbjct: 697 RSIPHLLDGLKPSQRKVI---------FGS-FKRNIMKTEIKVQELAAYVSGQTAYHHTE 746

Query: 92  QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
           QS+  ++V LAQ FV      L+  +G FG     G  AAA RY   ++  +++ +   +
Sbjct: 747 QSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRATGGKDAAAARYIFTQLNSISKHVFNPL 806

Query: 148 DEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           D   +    TY ++D    EP  +    P +L NG  GI  G +TSIP  N  +I     
Sbjct: 807 DNPLL----TYVQDDEKTVEPEWYVPALPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLR 862

Query: 205 ALI--DNPE 211
            L+  D P+
Sbjct: 863 KLMRGDEPD 871


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 31/190 (16%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSV 94
           ER+IP + DG K   R+I+++       F    KK  R V ++IG +     + HG+ S+
Sbjct: 812 ERSIPSIVDGLKISQRKILYSC------FKRNLKKELR-VAQLIGYVSEHSAYHHGEASL 864

Query: 95  YDSLVRLAQPFVQR------YPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
             +++ +AQ +V        YP     G+FG+    G  ++  RY    +  +   +   
Sbjct: 865 ASTIINMAQDYVGSNNINTLYP----SGSFGSRLQGGKDSSQPRYIHTCLRDITRTLFHQ 920

Query: 147 VDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
            D++ +    TY  +D    +P  +    P +L NG+SGI  G ++SIP++N +++ +  
Sbjct: 921 DDDNLL----TYVNDDGKKVQPKWYMPTIPFVLVNGSSGIGTGYSSSIPNYNPRDLIQCM 976

Query: 204 LALIDNPEIS 213
             L+D  E++
Sbjct: 977 RDLLDEKEMT 986


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 24/205 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T  + NV++V+    + +  + +++   K R+IP L DGFKP  R+++ +       F
Sbjct: 679 AGTHADYNVESVTYESFINKELILFSMEDNK-RSIPCLVDGFKPSQRKVLFSC------F 731

Query: 69  GAAFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN- 120
               KK  ++V ++ G +     + HG+ S+  ++  +AQ F       L++  G FG  
Sbjct: 732 KRNLKKEIKVV-QLAGYVSEHSAYHHGETSLNGTITAMAQNFTGSNNLNLLTPGGQFGTR 790

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLL 176
            + G  AA+ RY    + + A  +    D+DA+    TY ++D    EP  +    P +L
Sbjct: 791 LMGGKDAASPRYIFTALQKAARAVFH-PDDDALL---TYLDDDGLSIEPEFYMPIIPLIL 846

Query: 177 ANGTSGIAVGMATSIPSHNVQEICE 201
            NG+ GI  G ++++P+++  ++ E
Sbjct: 847 VNGSDGIGTGWSSNVPNYSPHDVIE 871


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-----KLHPHGDQSVY 95
           R+IP + DG KP  R++I +       F    KK  +++ +++G      ++ HGD S+ 
Sbjct: 795 RSIPSIADGLKPDQRKVIWSC------FKRNLKKEIKVI-QLVGYVSEHSVYHHGDASLT 847

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ FV      L+   G +G  D  G   A+ RY    +  ++  I    D+DA
Sbjct: 848 QTIVALAQDFVGSNNLNLLVPCGQYGTRDMGGKDHASARYINTLLQPISRTIFN-PDDDA 906

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           +    T      EP  +    P +L NG  GI  G +T++P  N  +I      L++N E
Sbjct: 907 ILTPQTDENHVIEPEFYMPIVPMVLINGAEGIGTGWSTNVPGFNPLDIVANIRRLMNNEE 966


>gi|255030685|ref|ZP_05302636.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 278

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NE 410
           P++M +  +L  ++ H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR ++
Sbjct: 9   PELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSK 68

Query: 411 DK--PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           DK   K  + +++  +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L   
Sbjct: 69  DKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDE 128

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    +  E+ E+K    K     RR     E++     T  + ++  E + V ++  G
Sbjct: 129 AELIAVLKEELAEIK----KKYKTARRTEVQAEIAEIKIDT--EVLVANEDVIVSVTKEG 182

Query: 529 WIR--SLKSHSVDLSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++  S +S++    A L  KE D        ++ D +LL ++ G     P   L
Sbjct: 183 YVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHEL 237


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 19/201 (9%)

Query: 27  EERYLAYALSTIKE----------RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           E +Y+ Y+    KE          R+IP + DG KP  R+I+    +  L       K A
Sbjct: 678 EGKYIKYSDFINKELIQFSMADLLRSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVA 734

Query: 77  RIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRY 131
           +  G V     + HG+QS+  ++  +AQ FV      L+   G FG  D  G  AA+ RY
Sbjct: 735 QFSGYVSEHSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARY 794

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++ +   I    D+  +++ D  + +  EP  +    P +L NG+ GI  G +T I
Sbjct: 795 IFTLLSPITRSIFPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFI 853

Query: 192 PSHNVQEICEAALALIDNPEI 212
           P++N ++I      L+++  +
Sbjct: 854 PNYNPRDIVANLRRLLNDEPV 874


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|332258450|ref|XP_003278314.1| PREDICTED: DNA topoisomerase 2-alpha [Nomascus leucogenys]
          Length = 906

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 29/202 (14%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 879

Query: 207 IDN----PEISIEKLLEYIIGP 224
           +D     P +SI  +L  +  P
Sbjct: 880 MDGEEPLPMVSILCVLRALTFP 901


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 713 ERSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKGAQLAGSVAEMSSYH-HG 761

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 762 EASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 821

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           VD++ + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E       L
Sbjct: 822 VDDNVLRFLYDDNQR-VEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCL 880

Query: 207 IDNPE 211
           +D  E
Sbjct: 881 LDGKE 885


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 23/205 (11%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E   +  +L S ++    I  E+
Sbjct: 12  KYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREEL 71

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             ++  FS +     RRT   E++ A      + +I +E + V +S+ G+++        
Sbjct: 72  EAIRAGFSDA-----RRT---EITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYE 123

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589
           + +      SA   KE D ++  L A+T D ILL ST GK Y +    L L+ R   G+ 
Sbjct: 124 AQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKP 183

Query: 590 IQLLIDLNHNQDI-----VTAFVYD 609
           I  L+ L  N+ I     VT F  D
Sbjct: 184 IVNLLPLEENERITAILPVTEFSED 208


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 691 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 739

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ +V      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 740 EVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 799

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  ++++ T + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +
Sbjct: 800 LDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRM 858

Query: 207 IDNPE 211
           I+  E
Sbjct: 859 INEEE 863


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP 224
           P+V P+  P+LL  G+SGIAVGMAT +P  ++ E  EA  +  D   I+IE+L++YI  P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 225 DFPTG 229
            FP+G
Sbjct: 62  AFPSG 66


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 691 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 739

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ +V      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 740 EVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 799

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  ++++ T + +  EP+ +    P +L NG  GI  G +T I ++N +EI      +
Sbjct: 800 LDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRM 858

Query: 207 IDNPE 211
           I+  E
Sbjct: 859 INEEE 863


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          SN    +N    +L   +E+R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ L F
Sbjct: 2  SNQKQTDNELVYTLNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 69 GAAFKKS 75
           +++KKS
Sbjct: 62 NSSYKKS 68


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 155/352 (44%), Gaps = 44/352 (12%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
            ++IP L DG KP  R+I+  +    +D     K S ++ G V  +  + HG++S+  +++
Sbjct: 1970 QSIPSLIDGLKPSQRKILWTLLN-NMDESTEIKVS-QLAGAVAHRQSYHHGEESLVRTII 2027

Query: 100  RLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            R+ Q F      PL+   G FG  +  G+ AA+ RY    +     L+    D+D +   
Sbjct: 2028 RMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLL--- 2084

Query: 156  DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
               N E+    EP + P   P +L NGT GI  G +T I + N  +I +     ID+  I
Sbjct: 2085 -QKNVEEGMVVEPTLCPI-VPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDS--I 2140

Query: 213  SIEKLLEYIIGPDFPT--GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            S     EY I P +    G + V +    + S ++      +R     E     ++ I +
Sbjct: 2141 ST----EYEIPPFYEEFRGKLEVVTPTKFISSGKIQ----LIRP----ERKNASTFSIEI 2188

Query: 271  TEIPYQVQKSRLIEKIAELIIAKRIPLLE--DIRDESAEDVRIVLFPKNRSL-----DPD 323
             E+P  +  S+  EK+++++  + +P+LE  +   E     RI L  K  S      + D
Sbjct: 2189 VELPIGIWTSKYKEKLSKIV--ETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSD 2246

Query: 324  LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            LL       S  E R   + N    G + +   +  I  E+   RR++  +R
Sbjct: 2247 LLNYFKLRTSLTENRVLFDRN----GELKEFGNISEIAAEFFEVRRDLYEKR 2294


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 25/186 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 693 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 741

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 742 EMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 801

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  + ++   + +  EP+ +    P +L NG  GI  G +T I ++N +E+      +
Sbjct: 802 LDDPLLQYQ-VDDGQRIEPIWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELISNLRRM 860

Query: 207 IDNPEI 212
           I+  E+
Sbjct: 861 INGEEL 866


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 211 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 259

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 260 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 319

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 320 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 378

Query: 207 IDNPE 211
           +D  E
Sbjct: 379 MDGEE 383


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +E+ K +S +  +++  + ++ +   ER+IP + DG KP  R+++             
Sbjct: 706 LYQEDTKEISYKSFIDKELILFS-NMDNERSIPSMVDGLKPGQRKVLFT----------C 754

Query: 72  FK-------KSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN- 120
           FK       K A++ G V     + HG+ S+  +++ LA  FV      ++   G FG  
Sbjct: 755 FKRNDKREVKVAQLAGSVAEHSAYHHGEVSLMSTIINLAHNFVGSNNINILLPIGQFGTR 814

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            + G  AA+ RY    ++ V   +    DE  ++F    N++  EP  +    P +L NG
Sbjct: 815 LLGGRDAASARYIFTMLSPVTRAMFCTDDEPNLNFLFEDNQK-IEPFWYCPILPLVLVNG 873

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
             GI  G +T +P+H+ + + +    L+++ E+
Sbjct: 874 CEGIGTGWSTKVPNHDPRIVVKNLKRLMNDEEL 906


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 692 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 740

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ FV      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 741 EMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 800

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  + ++   + +  EP+ +    P +L NG  GI  G +T I ++N +++      +
Sbjct: 801 LDDPLLQYQ-VDDGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRDMITNLRRM 859

Query: 207 IDNPE 211
           I+N E
Sbjct: 860 INNEE 864


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 21/172 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV--GEVIGK--LHPHGDQSVYD 96
           R+IP L DG KP  R+++ A       F    K+  ++V  G  I +   + HGD S+  
Sbjct: 660 RSIPSLMDGLKPGQRKVLFAC------FKRNLKQEIKVVQLGGYIAEHSAYHHGDISLVT 713

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +++ +AQ FV      L+  +G FG+  + G   A+ RY    + ++   I    D+  V
Sbjct: 714 TIIGMAQNFVGSNNINLLLPRGQFGSRAMGGKDHASARYISTVLNKITRYIFPEQDDHVV 773

Query: 153 DFRDTYNEEDSE---PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
                Y E+D E   P  +    P  L NG  GI  G +TSI ++N  E+ E
Sbjct: 774 ----KYIEDDGEMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPVELVE 821


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
           cuniculus]
          Length = 1181

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 821 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 25/185 (13%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
            ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 1276 ERSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 1324

Query: 91   DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
            + ++  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 1325 EAALMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLVFPP 1384

Query: 147  VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            +D++ + F    N+   EP  +    P +L NG  GI  G A  IP+ +++E+      L
Sbjct: 1385 MDDNILRFLYDDNQR-VEPEWYMPIIPMVLVNGAEGIGTGWACKIPNFDIREVVNNIRRL 1443

Query: 207  IDNPE 211
            +D  E
Sbjct: 1444 MDGEE 1448


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 715 ERSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 763

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L    
Sbjct: 764 ETSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLAFPV 823

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D++ + F    N+   EP  +    P +L NG  GI  G +  IP+++V+E+      +
Sbjct: 824 LDDNVLKFLFDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNYDVREVVNNIRRM 882

Query: 207 IDNPE 211
           +D  E
Sbjct: 883 LDGDE 887


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 677 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 725

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 726 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPA 785

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 786 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 844

Query: 207 IDNPE 211
           +D  E
Sbjct: 845 MDGEE 849


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 23/172 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEVI-GKLHPHGD 91
           ER+IP L DG KP  R++++            FK++       A++ G V     + HG+
Sbjct: 718 ERSIPSLVDGLKPGQRKVLYT----------CFKRNDKREIKVAQLAGSVAEHSAYHHGE 767

Query: 92  QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
            S+  +++ LAQ FV      L+   G FG     G  AA+ RY    ++ +A LI+  +
Sbjct: 768 MSLMSTIIGLAQDFVGSNNINLLLPIGQFGTRLQGGKDAASPRYIFTMLSPLARLIVPAL 827

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           D+  ++     N++  EP  +    P +L NG  GI  G +T +P+++ +E+
Sbjct: 828 DDPVLNHLYDDNQK-IEPEFYMPILPMVLVNGAEGIGTGWSTKVPNYDPREV 878


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T ++   + ++ R  + +  + ++++ +  R+IP + DG KP  R+I+    +      A
Sbjct: 667 TFLDMTAEKINYRDFVNKELILFSMADLA-RSIPSMVDGLKPGQRKILFCCFKRNFVTQA 725

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNID--GDSA 126
              + +  V E     + HG+ S+  +++ +AQ FV      L+S +G FG  +  G + 
Sbjct: 726 KVAQFSGYVSE--HSAYHHGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNH 783

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGI 183
           A+ RY    +  +   +    D+  +D    Y +ED    EP  +    P +L NG+ GI
Sbjct: 784 ASPRYIFTCLAPITRALFPQADDVLLD----YLKEDGQSIEPTWYCPIIPLVLVNGSEGI 839

Query: 184 AVGMATSIPSHNVQEI 199
             G ++ +P++N +EI
Sbjct: 840 GTGWSSFVPNYNPREI 855


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 8/95 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
            +  +  YA   I ERAIP + DG KPV RR++  +  M  D G    K A I G  +  
Sbjct: 8   FKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRM--DDG-KMHKVANIAGRTMA- 63

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           LHPHGD  + ++LV LA    +R+ LI  QGNFGN
Sbjct: 64  LHPHGDAPIVEALVVLAN---KRF-LIETQGNFGN 94


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 40   ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
            +R+IP + DGFKP  R I++   + G        K +++ G V     + HG+ S+  ++
Sbjct: 833  DRSIPSMIDGFKPSQRMILYCCFKRGRHSKEV--KVSQLAGYVSENTDYHHGEASLQGAI 890

Query: 99   VRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
            + +AQ F       ++   GNFG     G   A+ RY    +  +A  I +  D++ +  
Sbjct: 891  IGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIFTELHPIANYIFREEDDEIL-- 948

Query: 155  RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               YN +D    EP VF    P  + NG+ GI  G + ++P HN  ++      LI+
Sbjct: 949  --KYNYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPPHNPLDVVANLKRLIN 1003


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3)
           [Monodelphis domestica]
          Length = 1548

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 713 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 761

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 762 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPA 821

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 822 KDDQTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 880

Query: 207 IDNPE 211
           +D  E
Sbjct: 881 MDGEE 885


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSL 98
           +RAIP L DG KP  R++++A  +  L    +  K +++ G V  K  + HG+ S+  ++
Sbjct: 755 QRAIPSLMDGLKPGQRKVLYACFKRNL---KSKLKVSQLSGYVSDKAAYHHGEASLNGTI 811

Query: 99  VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V +AQ F       L+   G FG+    G  ++A RY    +  +A  +    D+  +  
Sbjct: 812 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQ- 870

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              Y E+D    EP  +    P +L NG+ GI  G +T+IP
Sbjct: 871 ---YKEDDGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 908


>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
           troglodytes]
          Length = 1500

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 681 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 729

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 730 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 789

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 790 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 848

Query: 207 IDNPE 211
           +D  E
Sbjct: 849 MDGEE 853


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Pongo abelii]
          Length = 1532

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 713 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 761

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 762 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 821

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 822 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 880

Query: 207 IDNPE 211
           +D  E
Sbjct: 881 MDGEE 885


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +L+ +
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDI 60


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+EI      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+N + V+ +  + +  + ++ +   ER+I  + DG KP  R+++    +        
Sbjct: 675 LYEKNTRTVTYKDFVNKELVLFS-NMDNERSIASVVDGLKPGSRKVLFTCIKRN---DKR 730

Query: 72  FKKSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSA 126
             K A++ G V     + HG+ S+  ++V LAQ +V      L+   G FG     G  A
Sbjct: 731 EIKVAQLAGSVAEHSAYHHGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQGGKDA 790

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDF-RDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           A+ RY    ++ +  LI    D+  + + RD  + +  EPV +    P +L NG  GI  
Sbjct: 791 ASPRYIFTMLSPLTRLIFHPHDDPLLTYLRD--DNQKIEPVWYMPIIPMVLVNGAEGIGT 848

Query: 186 GMATSIPSHNVQEI 199
           G  T IP+HN +E+
Sbjct: 849 GWMTKIPNHNPREV 862


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 23/210 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642 DPNTYLDQDVDSISYEDFVHKELILFSYDDC-ERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ----RYPLISGQGNFGNI-- 121
                 + + +V E     + HG+ S+  ++V +AQ F       + L SGQ  FG+   
Sbjct: 701 KELKVSQLSGLVSEKSS--YHHGEVSLQATIVNMAQNFCGSNNVNWLLPSGQ--FGSRLG 756

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANG 179
            G   AA RY   R++ ++  +    D+  +++     +ED   EP  +    P +L NG
Sbjct: 757 GGKDQAAARYIYTRLSSISRYLCPKDDDQILEY---LVDEDRRIEPKYYCPIIPTVLVNG 813

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDN 209
             GI  G +T++ ++N        L L+DN
Sbjct: 814 ADGIGTGWSTAVSNYN-------PLDLVDN 836


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 21/171 (12%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV--GEVIGK--LHPHGDQSVYD 96
           R+IP L DG KP  R+++ A       F    K+  ++V  G  I +   + HGD S+  
Sbjct: 673 RSIPSLMDGLKPGQRKVLFAC------FKRNLKQEIKVVQLGGYIAEHSAYHHGDLSLVS 726

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +++ +AQ FV      L+  +G FG+  + G   A+ RY    + ++   I    D+  +
Sbjct: 727 TIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLL 786

Query: 153 DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
                Y E+D    EP  +    P  L NG  GI  G +TSI ++N  E+ 
Sbjct: 787 ----KYQEDDGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIELV 833


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP + DG KP  R+I+    +  L       K A+  G V     + HG+QS+  ++ 
Sbjct: 702 RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFSGYVSEHSAYHHGEQSLASTIT 758

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      L+   G FG  D  G  AA+ RY    ++ +   I    D+  +++ 
Sbjct: 759 GMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPKDDDILLNYL 818

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           D  + +  EP  +    P +L NG+ GI  G +T IP++N ++I 
Sbjct: 819 DE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIV 862


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP L DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 709 ERSIPSLVDGLKPGQRKVMFT----------CFKRNDKREVKVAQLSGSVAEMSAYH-HG 757

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  ++V LAQ +V      L+  +G FG     G   A+ RY    M+ +  LI   
Sbjct: 758 EVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHP 817

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+  + ++ T + +  EP+ +    P +L NG  GI  G +T I ++N +E+      +
Sbjct: 818 LDDPLLQYQ-TDDGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELINNLRRM 876

Query: 207 IDNPE 211
           I+  E
Sbjct: 877 INGEE 881


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 10/187 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ + T G++Y +    L S RG GE +   + L     +    +     KLL+ S  G 
Sbjct: 1   MVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGY 60

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
            F+   ++++A  R GKT + +     +   LV+K   D +  + +  ++L+F +D +P+
Sbjct: 61  GFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQ 120

Query: 681 MSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +S+GKG ++        +  D G++ +        LT I    R       +L   +G+R
Sbjct: 121 LSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQKVVGER 179

Query: 734 GGVGSLV 740
           G  G+L+
Sbjct: 180 GRRGTLM 186


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP + DG KP  R+I+    +  L       K A+  G V     + HG+QS+  ++ 
Sbjct: 664 RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFSGYVSEHSAYHHGEQSLASTIT 720

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      L+   G FG  D  G  AA+ RY    ++ +   I    D+  +++ 
Sbjct: 721 GMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPKDDDILLNYL 780

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           D  + +  EP  +    P +L NG+ GI  G +T IP++N ++I 
Sbjct: 781 DE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIV 824


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP + DG KP  R+I+    +  L       K A+  G V     + HG+QS+  ++ 
Sbjct: 664 RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFSGYVSEHSAYHHGEQSLASTIT 720

Query: 100 RLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      L+   G FG  D  G  AA+ RY    ++ +   I    D+  +++ 
Sbjct: 721 GMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPKDDDILLNYL 780

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           D  + +  EP  +    P +L NG+ GI  G +T IP++N ++I 
Sbjct: 781 DE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIV 824


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 38/157 (24%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++++ +++  + ++  F +NM  L  G+ P++M L  I+  ++ HRREV+ RR+ F ++ 
Sbjct: 14  EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTRRTIFELRK 72

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------------- 420
              R  IL+ L IA  NID II +IR    P   K  ++SR                   
Sbjct: 73  ARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAA 132

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKL 442
                          + LTE Q  AIL+LRL+ L  L
Sbjct: 133 RPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGL 169


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Macaca mulatta]
          Length = 1481

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 679 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 727

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 728 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 787

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 788 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 846

Query: 207 IDNPE 211
           +D  E
Sbjct: 847 MDGEE 851


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSL 98
           +RAIP L DG KP  R++++A  +  L       K +++ G V  K  + HG+ S+  ++
Sbjct: 754 QRAIPSLMDGLKPGQRKVLYACFKRNLKTKL---KVSQLSGFVSDKAAYHHGEASLNGTI 810

Query: 99  VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V +AQ F       L+   G FG+    G  ++A RY    +  +A  +    D+  +  
Sbjct: 811 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQ- 869

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              Y E+D    EP  +    P +L NG+ GI  G +T+IP
Sbjct: 870 ---YKEDDGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 907


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 15/161 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK-LHPHGDQSVYDSL 98
           +RAIP L DG KP  R++++A  +  L       K +++ G V  K  + HG+ S+  ++
Sbjct: 755 QRAIPSLMDGLKPGQRKVLYACFKRNLKTKL---KVSQLSGFVSDKAAYHHGEASLNGTI 811

Query: 99  VRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           V +AQ F       L+   G FG+    G  ++A RY    +  +A  +    D+  +  
Sbjct: 812 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQ- 870

Query: 155 RDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              Y E+D    EP  +    P +L NG+ GI  G +T+IP
Sbjct: 871 ---YKEDDGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 908


>gi|332755279|gb|EGJ85643.1| DNA gyrase subunit A domain protein [Shigella flexneri K-671]
          Length = 72

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
          +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+K
Sbjct: 8  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYK 64


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 127/294 (43%), Gaps = 35/294 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642 DPNTYLDQDVDSISYEDFVHKELILFSYDDC-ERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ----RYPLISGQGNFGNI-- 121
                 + + +V E     + HG+ S+  ++V +AQ F       + L SGQ  FG+   
Sbjct: 701 KELKVSQLSGLVSEKSS--YHHGEVSLQATIVNMAQNFCGSNNVNWLLPSGQ--FGSRLG 756

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANG 179
            G   AA RY   R++ ++  +    D+  +++     +ED   EP  +    P +L NG
Sbjct: 757 GGKDQAAARYIYTRLSSISRYLCPKDDDQILEY---LIDEDRRIEPKYYFPIIPTVLVNG 813

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GI  G +T++ ++N        L L+DN          Y+ G +F             
Sbjct: 814 ADGIGTGWSTAVSNYN-------PLDLVDN-------CRRYLNGEEFKEMKPWFRGWTGQ 859

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
           +   + G  G+    +W      +    I +TE+P Q+      + + + I AK
Sbjct: 860 LRKNKDG-SGYDCYGKWRRLSEDK----IEITELPIQIWTDSYKQHLEKCIEAK 908


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 779 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 831

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+ +  D D 
Sbjct: 832 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCRPSD-DP 890

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           +  R T +    EP  +    P +L NG  GI  G +T+IP +N  +I      L++  E
Sbjct: 891 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGWSTTIPCYNPVDIVANIRRLMNGEE 950

Query: 212 I 212
           +
Sbjct: 951 V 951


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 710 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 758

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 759 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPS 818

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 819 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 877

Query: 207 IDNPE 211
           +D  E
Sbjct: 878 LDGEE 882


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 710 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 758

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 759 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPS 818

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 819 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 877

Query: 207 IDNPE 211
           +D  E
Sbjct: 878 LDGEE 882


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 23/170 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG-KLHPHGDQSVYDSL 98
           ER+IP L DGFKP  R+++ A  +     G    K A++ G V     + HG+QS+  ++
Sbjct: 79  ERSIPCLVDGFKPGQRKVLFACFKRSDKHGV---KVAQLAGGVADMSAYHHGEQSLMTTI 135

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           V LAQ             ++G   G  +A+ +Y   +++ V   +    D++ + F   Y
Sbjct: 136 VHLAQ-------------DYG---GKDSASAQYIFTQLSPVTRTLFPSHDDNVLRF--LY 177

Query: 159 NEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            E    EP  +    P +L NG  GI  G  T+IP++N +E+ +    LI
Sbjct: 178 EENQRIEPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLI 227


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 759

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 760 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPS 819

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 820 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 878

Query: 207 IDNPE 211
           +D  E
Sbjct: 879 LDGEE 883


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
           [Canis familiaris]
          Length = 1533

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 713 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 761

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 762 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 821

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E+      L
Sbjct: 822 KDDQTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRL 880

Query: 207 IDNPE 211
           +D  E
Sbjct: 881 MDGEE 885


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
           [Canis familiaris]
          Length = 1532

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E+      L
Sbjct: 821 KDDQTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
           kowalevskii]
          Length = 1649

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 27/186 (14%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEVI-GKLHPHGD 91
           ER+IP + DG KP  R+++             FK++       A++ G V     + HG+
Sbjct: 727 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEHSAYHHGE 776

Query: 92  QSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGV 147
            S+  +++ LAQ FV      L+   G FG     G  AA+ RY    ++ +A L++   
Sbjct: 777 ASLMGTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLMPAS 836

Query: 148 DEDAVD--FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
           D+  +   F D    +  EP  +    P +L NG  GI  G +T I +++V+EI      
Sbjct: 837 DDPNLTQLFDDN---QRIEPEWYCPIIPMVLVNGAEGIGTGWSTKIANYDVREIVANIRL 893

Query: 206 LIDNPE 211
           +ID  E
Sbjct: 894 MIDGEE 899


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 712 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 760

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 761 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 820

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E+      L
Sbjct: 821 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRL 879

Query: 207 IDNPE 211
           +D  E
Sbjct: 880 MDGEE 884


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 25/174 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV--GEVIGK--LHPHGDQSVYD 96
           R+IP L DG KP  R+++ A       F    K+  ++V  G  I +   + HGD S+  
Sbjct: 673 RSIPSLMDGLKPGQRKVLFAC------FKRNLKQEIKVVQLGGYIAEHSAYHHGDLSLVS 726

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +++ +AQ FV      L+  +G FG+  + G   A+ RY    + ++   I    D+  +
Sbjct: 727 TIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLL 786

Query: 153 DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHN----VQEI 199
                Y E+D    EP  +    P  L NG  GI  G +TSI ++N    VQ+I
Sbjct: 787 ----KYLEDDGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIDLVQQI 836


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK       K A++ G V  +   H HG
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 759

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 760 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 819

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 820 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 878

Query: 207 IDNPE 211
           +D  E
Sbjct: 879 LDGEE 883


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132
           K HPHGD + Y+++V +AQPF  RYPL+ GQGN+G  D   S AA RYT
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 49


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN
Sbjct: 7   FRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 762 RSIPSIADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEASLA 814

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+S  G +G   I G   AA RY       +   I    D+  
Sbjct: 815 ATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPL 874

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           ++    Y ++D    EP  +    P +L NG  GI  G +T+IP +N  +I 
Sbjct: 875 LN----YLKDDDVPIEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIV 922


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 777 RSIPSIADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEASLA 829

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+S  G +G   I G   AA RY       +   I    D+  
Sbjct: 830 ATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPL 889

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           ++    Y ++D    EP  +    P +L NG  GI  G +T+IP +N  +I 
Sbjct: 890 LN----YLKDDDVPIEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIV 937


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 23/172 (13%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 777 RSIPSIADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEASLA 829

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+S  G +G   I G   AA RY       +   I    D+  
Sbjct: 830 ATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPL 889

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           ++    Y ++D    EP  +    P +L NG  GI  G +T+IP +N  +I 
Sbjct: 890 LN----YLKDDDVPIEPEWYMPTVPMVLINGAEGIGTGWSTNIPPYNPVDIV 937


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 204/465 (43%), Gaps = 69/465 (14%)

Query: 268 IVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPD 323
           +V+TEIPY +  +   + +  IAEL+ +K++  + DI ++S  E +RIVL  + +  D +
Sbjct: 15  LVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRIVLELR-KDADVE 73

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +   ++  + +E  + +NM  +  GR P+ + L GILK +L  + E   R+    ++  
Sbjct: 74  KIRNILYKKTKLEDTYGVNMLAIVKGR-PETLNLRGILKNYLDFQYENNTRKYRVLLEKE 132

Query: 384 DRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVS------------------RFS 422
             + EI +GL+ A   ID IIA++   RN    K  +++                  +  
Sbjct: 133 LEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSAIRFKTPELEKDAGKLR 192

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IRE 481
            TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L S K   +Q+  E +  
Sbjct: 193 FTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKIL-SDKGTMDQVIKEDLAA 251

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           +K  F+       RRT    +    +    ++ +E   +  V+   G+ R +   + D +
Sbjct: 252 IKREFAYP-----RRTL---IEDGKEVVYDESAVEVREVVFVMDRFGYSRIVDRSTYDRN 303

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596
               +  ++  I      TDRI L +  G     K   +P G L   R  G  I  L   
Sbjct: 304 RETIENENTHVIC--CLNTDRICLFTDAGVLHQVKVTDIPLGKL---RDKGTPIDNLCKF 358

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSK--------GNAFIVEESEIIANT-RKGKTFLKV 644
           +  ++  T FV +++    KL + +++        G  F      + A   ++G + + V
Sbjct: 359 DGTKE-QTVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNRMVAATKLQEGDSLVSV 417

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP-EMSRGKGVR 688
              ++   VV  T + V         L F++D+I  +    +GVR
Sbjct: 418 QPADEASEVVLQTDNGV--------FLRFAMDEISVQKKNARGVR 454


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +V G  HP+GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA++
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 56


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+I+    +      A   + +  V E     + HG+ S+  +++ 
Sbjct: 697 RSIPSMVDGLKPGQRKILFCCFKRNFVTQAKVAQFSGYVSE--HSAYHHGEASLASTIIG 754

Query: 101 LAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +AQ FV      L+S +G FG  +  G + A+ RY    +  +   +    D+  +D   
Sbjct: 755 MAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIFTCLAPITRALFPQPDDVLLD--- 811

Query: 157 TYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
            Y +ED    EP  +    P +L NG+ GI  G ++ +P++N +EI      L+   E++
Sbjct: 812 -YMKEDGQSIEPSWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIVANIRRLLAGQELT 870


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 166/393 (42%), Gaps = 67/393 (17%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T +++    +  R  + +  + ++++ + +R+IP + DG KP  R+I+         F  
Sbjct: 676  TFLDDRDSHIKYRDFVHKELILFSIADV-QRSIPSMVDGLKPGQRKILFC------SFKR 728

Query: 71   AFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--I 121
             F + A+ V +  G +     + HG+QS+  +++ +AQ +V      L+   G FG    
Sbjct: 729  NFVREAK-VAQFSGYVSEHSAYHHGEQSLAGTIIGMAQDYVGSNNINLLLPIGQFGTRGQ 787

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLANG 179
             G   A+ RY   +++ V   +    D+  +D+    NE+    EP  +    P +L NG
Sbjct: 788  GGKDHASARYVFTQLSPVTRFLFPKADDILLDY---LNEDGQSIEPTWYVPIIPMVLVNG 844

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEI------------SIEKLLEYIIGPDFP 227
            + GI  G ++ +P++N  +I      L+++               S+EK      G  + 
Sbjct: 845  SEGIGTGWSSYVPNYNPVDIIANIRHLLNDEATEPMHPWYKGFLGSVEKTATKEAGASYT 904

Query: 228  TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
              GII E  ++ +                C++E+    W     E          +E ++
Sbjct: 905  VSGIIEEVDDTTL----------------CIKELPIRRWTQDYKE---------FLESVS 939

Query: 288  ELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDP---DLLMESIFMLSDMETRFPLNM 343
                  + P +E  RD S +E V  ++  K   L+    + L++   + + + T    NM
Sbjct: 940  AENDKSKDPFIEGCRDYSGSELVNFLVGMKPEKLEAAKREGLLKKFKLTTSIST---CNM 996

Query: 344  NVL-SMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  S G + +    + IL+E+   R E+  +R
Sbjct: 997  HLFDSKGVIKKYDTPEQILEEFFYIRLELYEKR 1029


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 172/391 (43%), Gaps = 55/391 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP +R  FKP  R+++    +  L    A  K A++ G V     + HG+ S+   +V
Sbjct: 394 RSIPSVR--FKPSQRKVLFCCFKRNL---RAELKVAQLAGYVSEHSAYHHGEASLQGCIV 448

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ FV      L+   G FG+  + G  AA+ RY    + Q+  LI   +D D + + 
Sbjct: 449 NMAQDFVGSNNIHLLPPIGQFGSRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKYL 508

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
            + + +  EP  +    P +L NG+ GI  G +   P++N  +I +    +I+  EI+  
Sbjct: 509 -SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWS---PNYNPLDIIKGLRQMINGEEIA-- 562

Query: 216 KLLEYIIGPDFP-----TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
                   P  P     TG I+ ++     ++     G + V+  + V +       +VV
Sbjct: 563 --------PLTPWYREFTGHIVEKANSRGTDT-----GNYIVQGLYEVTD----DSTLVV 605

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP---KNRSLD-----P 322
           +E+P +       + +  L+ A  I   +D + E+  DV+ VLF    + ++L      P
Sbjct: 606 SELPVKSWTQTYKQFLEGLLDAGTI---KDFK-ENHTDVK-VLFTITMEQKALSDVTKAP 660

Query: 323 DLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
             +++   + S + T    NM++  + G + +      I+ E+   R E   RR    +Q
Sbjct: 661 GGIVKKFKLESSLSTS---NMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQ 717

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +  ++++L       L + E   ++ N  K
Sbjct: 718 KLQDQIKLLSNKARFVLAVVEGKLVVNNRKK 748


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
          Length = 1178

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 24/211 (11%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +T V+ N    +    + E  + Y+   ++ R++P++ DG KP  R+++  M      FG
Sbjct: 706 STAVDSNRNQKTFSEFVNEELVEYSQLDLR-RSLPNVVDGLKPSQRKVLFTM------FG 758

Query: 70  AAFKKSARI------VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN- 120
              +   R+      V +  G  + HG++S+ +++VRLAQ FV      L+   G FG  
Sbjct: 759 RYERGEIRVSQLAGAVSQYCG--YHHGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTR 816

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKFPNLLA 177
              G+  A+ RY    ++ +A  I    D+  +       EE++  EP  +    P +L 
Sbjct: 817 LSGGEDVASARYIYTSLSPLARAIFPHPDDKVLK---NLVEENALVEPEWYCPIIPMILI 873

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALID 208
           NG  GI  G AT I     +++   A  LID
Sbjct: 874 NGAEGIGTGWATKILPRCPRQVISNAQRLID 904


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus
           anatinus]
          Length = 1746

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---KSARIVGEV--IGKLHPHGDQSV 94
           ER+IP + DG KP  R+++         F    K   K A++ G V  +   H HG+ S+
Sbjct: 740 ERSIPSMVDGLKPGQRKVLFTC------FRRNDKREVKVAQLAGSVAEMSSYH-HGEMSL 792

Query: 95  YDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDED 150
             +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+    D++
Sbjct: 793 MMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPVKDDN 852

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            + F    N+   EP  +    P +L NG  GI  G +  +P+++V+E+      ++D  
Sbjct: 853 TLKFLYDDNQR-VEPEWYIPIVPMVLVNGAEGIGTGWSCKLPNYDVREVVNNIRRMMDGE 911

Query: 211 E 211
           E
Sbjct: 912 E 912


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 46/345 (13%)

Query: 67   DFGAAFKKS-------ARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQG 116
            D   +FKK        A+ +G V     + HG+QS+  +++ +AQ FV      L+   G
Sbjct: 685  DLFGSFKKKLYKEIKVAQFIGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLKPNG 744

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS--EPVVFPSKF 172
             FG  N+ G   A+ RY    ++ V   +    D+  +++    NE+    EP  +    
Sbjct: 745  QFGTCNLGGKDHASARYIYTELSPVTRCLFHEHDDKLLEY---LNEDGKSIEPNWYMPII 801

Query: 173  PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
            P +L NG+ GI  G ++ IP++N +EI      L++  E+              P     
Sbjct: 802  PLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEEL-------------VPMDPWY 848

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAEL 289
               R +I +S +   GG+ V     V E+   ++ I  TE+P   +     + +E I + 
Sbjct: 849  KGFRGTIEKSAK--EGGYIVNG--TVTEIDEQTFRI--TELPIRKWTQDYKQFLESITDG 902

Query: 290  IIAKRIPLLEDIR---DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL-NMNV 345
                + PL+ED R   D++  D+ I + P+  +    +L E +F    + +     NM++
Sbjct: 903  APNVKDPLIEDFRQNGDDAIVDIEIKMKPEKIAT---ILQEGLFKKFKLTSTISTSNMHL 959

Query: 346  LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
                   +    + IL+E+   R +   +   + +  ++R + IL
Sbjct: 960  FDAEGNKKFDTPEQILEEFFPLRLDYYEKSKEYILGNLNRLLLIL 1004


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 212 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 260

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 261 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 320

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 321 KDDHTLRFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 379

Query: 207 IDNPE 211
           +D  E
Sbjct: 380 LDGEE 384


>gi|325068317|ref|ZP_08126990.1| DNA topoisomerase [Actinomyces oris K20]
          Length = 171

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  ++  F LTE Q   IL
Sbjct: 1   TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQVFDLTEPQAGYIL 60

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L K    +++ E D L  E E ++++L         ++ E+  V E F      
Sbjct: 61  ELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVSRELAAVAEQFGTP--- 117

Query: 493 GRRRTTFCEVS 503
             RRT   E S
Sbjct: 118 --RRTVLLEAS 126


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+IP + DG KP  R+++    +          + A  VGE+    + HG+ S+  +++
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSVGEMSS--YHHGEMSLMMTII 768

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG     G  +A+ RY    ++ +  L+    D+  + F 
Sbjct: 769 NLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFL 828

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
              N+   EP  +    P +L NG  GI  G +   P+ +++E+      L+D  E
Sbjct: 829 YDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKTPNFDIREVVNNIRRLLDGEE 883


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 759

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +  L+   
Sbjct: 760 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPP 819

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E+      L
Sbjct: 820 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRL 878

Query: 207 IDNPE 211
           +D  E
Sbjct: 879 LDGEE 883


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 759

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +  L+   
Sbjct: 760 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPP 819

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +    P +L NG  GI  G +  IP+ +++E+      L
Sbjct: 820 KDDHTLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRL 878

Query: 207 IDNPE 211
           +D  E
Sbjct: 879 LDGEE 883


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 97/198 (48%), Gaps = 18/198 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T ++ N K +     + +  + ++++ + +R+IP + DG KP  R+I+         F  
Sbjct: 667 THLDHNQKIIKYSDFINKELILFSMADL-QRSIPSMVDGLKPGQRKILFC------SFKR 719

Query: 71  AFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NI 121
            F K A+ V +  G +     + HG+QS+  +++ +AQ FV      L+   G FG  ++
Sbjct: 720 NFVKEAK-VSQFSGYVSEHSAYHHGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSV 778

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY   +++ +   +    D+  +D+ D   +   EP  +    P +L NG  
Sbjct: 779 GGKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDEDGQT-IEPTWYMPIIPTVLVNGCE 837

Query: 182 GIAVGMATSIPSHNVQEI 199
           GI  G +T IP++N +++
Sbjct: 838 GIGTGWSTFIPNYNPRDV 855


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          SN    +N    +L   +++R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ L F
Sbjct: 2  SNQKQTDNELVYTLNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 69 GAAFKK 74
           +++KK
Sbjct: 62 NSSYKK 67


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 30/251 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +++N K +     + +  + ++++ + +R+IP + DG KP  R+I+         F  
Sbjct: 664 THLDQNQKLIKYSDFINKELILFSMADL-QRSIPSMVDGLKPGQRKILFC------SFKR 716

Query: 71  AFKKSARIVGEVIGKL-----HPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NI 121
            F K A+I  +  G +     + HG+QS+  +++ +AQ FV      L+   G FG  ++
Sbjct: 717 NFVKEAKI-SQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRSV 775

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY   +++ +   +    D+  +D+ D   +   EP  +    P +L NG  
Sbjct: 776 GGKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDEDGQT-IEPNWYMPIIPMVLVNGCE 834

Query: 182 GIAVGMATSIPSHNVQEICEAALALID-------NP-----EISIEKLLEYIIGPDFPTG 229
           GI  G +T IP++N ++I      L++       NP     + +IEK      G  +   
Sbjct: 835 GIGTGWSTFIPNYNPRDIVANIRRLLNGEMMEPMNPWYRGFKGTIEKGASKEAGCSYTVN 894

Query: 230 GIIVESRESIV 240
           G+I E  E+ +
Sbjct: 895 GVINEVNETTL 905


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
          +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58


>gi|87295001|gb|ABD36913.1| putative type IIA topoisomerase [Moraxella osloensis]
          Length = 80

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%)

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EP+TV++S  GWIRS K H VD + ++++ GD+        + +++ L+   G++Y + A
Sbjct: 5   EPVTVIVSKSGWIRSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRIDA 64

Query: 578 GNLLSGRGHGEAIQLL 593
             L S RG  E +  L
Sbjct: 65  HALPSARGQSELLTSL 80


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           HGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 93/195 (47%), Gaps = 8/195 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T ++   +A++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L  
Sbjct: 686 AGTFLDHQTEAITYSEFINKELILFSMAD-NVRSIPSVVDGFKPSQRKVLFACFKRNLKD 744

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGD 124
                + A  V E     + HG+ S+  ++V +AQ +       L+   G FG     G 
Sbjct: 745 EIKVAQLAGYVAE--HSAYHHGEVSLAGTIVNMAQNYTGSNNINLLLPLGQFGTRLQGGK 802

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA+ RY   ++  +  LI    D+  +++ D  + +  EP  +    P  L NG  GI 
Sbjct: 803 DAASARYIFTKLATLTRLIFPANDDSLLNYLDE-DGQRIEPEWYMPILPLSLINGCEGIG 861

Query: 185 VGMATSIPSHNVQEI 199
            G ++S+P+ + +++
Sbjct: 862 TGWSSSVPNFSPRDV 876


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%)

Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
          +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G+   ++ 
Sbjct: 15 IAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSH 74

Query: 73 KKSARIVG 80
          +KS+ IVG
Sbjct: 75 RKSSSIVG 82


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 20/181 (11%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL--HP 88
           L Y      ER IP + DG K   R+I+  +      F    K +   +   + K   + 
Sbjct: 24  LIYFFQANLERCIPSVADGLKLSSRKILFTL------FKCNKKVTVEQLASDVSKTCSYH 77

Query: 89  HGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELI 143
           H  QS+  ++VR+AQ +V       L+   G FG+    G  A+  +Y    ++ +A ++
Sbjct: 78  HSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQFGSRISGGKDASNPKYIFTELSVMARVL 137

Query: 144 LQGVDEDAVDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
               D    D    Y +ED    EP+ +    P +L NG  G+  G +T IP ++ +EI 
Sbjct: 138 FPNDD----DVHLQYLKEDGKTIEPLCYMPVIPTVLVNGARGVGSGWSTFIPKYDPREIA 193

Query: 201 E 201
           E
Sbjct: 194 E 194


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           RAIP   DG+KP  R+I+    +  +       K A++ G+V  +  + HG+ S+ ++++
Sbjct: 690 RAIPSSIDGWKPGQRKILWVCLKNNIKNDL---KVAQLSGKVSEQAAYHHGEASLNETII 746

Query: 100 RLAQPFVQRYPLISGQ--GNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            + Q FV    +   Q  G  G     G+ + + RY    + ++   I    D+D +   
Sbjct: 747 GMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTALEKITRTIFMKEDDDLL--- 803

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            TYN ++    EPV +    P +L NG  GI VG ++ +P +  Q+I +
Sbjct: 804 -TYNTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIID 851


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           RAIP   DG+KP  R+I+    +  +       K A++ G+V  +  + HG+ S+ ++++
Sbjct: 690 RAIPSSIDGWKPGQRKILWVCLKNNIKNDL---KVAQLSGKVSEQAAYHHGEASLNETII 746

Query: 100 RLAQPFVQRYPLISGQ--GNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            + Q FV    +   Q  G  G     G+ + + RY    + ++   I    D+D +   
Sbjct: 747 GMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTALEKITRTIFMKEDDDLL--- 803

Query: 156 DTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            TYN ++    EPV +    P +L NG  GI VG ++ +P +  Q+I +
Sbjct: 804 -TYNTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIID 851


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 395 IAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L  LE  +I++EL
Sbjct: 2   IALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENEL 61

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+ E  +++ +L S     N I  E++E++  F    D+ R      ++         
Sbjct: 62  AELMKEIARLEEILKSETLLENLIRDELKEIRSKF----DVPR----ITQIEDDYDDIDI 113

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           + +I  E + V I++RG+I+ + S   +      K G   K+A+  +  D I   ST
Sbjct: 114 EDLIPNENMVVTITHRGYIKRVPSKQYEKQ----KRGGKGKLAVTTYDDDFIESFST 166


>gi|33322733|gb|AAQ07101.1|AF496413_1 topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 122

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 4/111 (3%)

Query: 330 FMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++L + + +   N N++++  + P  + L  IL  +L H  EV+ +R+ F ++    R+E
Sbjct: 10  YLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVTKRTQFDLKKASDRLE 69

Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           I++GL+ A   +D++I +IR   N+   K  +V+ F+ T  Q +AI++L+L
Sbjct: 70  IIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTXRQAEAIVSLQL 120


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 53/298 (17%)

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR
Sbjct: 4   GGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIR 63

Query: 409 NEDKPKP----VMVSR-------------------------FSLTENQVDAILNLRLRSL 439
               P+     +M  R                         ++L+E Q  AIL LRL  L
Sbjct: 64  QAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARL 123

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L   +I  EL+ +  E +    +L+S  +    +  E+  V++ F        RRT  
Sbjct: 124 TALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTP-----RRT-- 176

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551
            E+         + +I +E + V +S+ G+I        R+ +      S +  ++ D +
Sbjct: 177 -EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFV 235

Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
                 +T   +L  S+ G     K + LP G   S    G+A+  ++ L   + I T
Sbjct: 236 SRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS---RGKALINMLPLEPGERITT 290


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 25/185 (13%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHG 90
           ER+IP + DG KP  R+++             FK++       A++ G V  +   H HG
Sbjct: 711 ERSIPSMVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSSYH-HG 759

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   
Sbjct: 760 EMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP 819

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
            D+  + F    N+   EP  +      +L NG  GI  G +  IP+ +V+E+      L
Sbjct: 820 KDDHTLRFLYDDNQR-VEPEWYNPINTMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRL 878

Query: 207 IDNPE 211
           +D  E
Sbjct: 879 LDGEE 883


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           HGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4  LTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAK 63

Query: 72 FK 73
          FK
Sbjct: 64 FK 65


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 74  KSARIVGEVI-GKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAA 128
           K A++ G V     + HG+ S+  ++V LAQ +V      L+   G FG     G  AA+
Sbjct: 23  KVAQLAGSVAEHSAYHHGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQGGKDAAS 82

Query: 129 YRYTEARMTQVAELILQGVDEDAVDF-RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RY    ++ +  LI    D+  + + RD  + +  EPV +    P +L NG  GI  G 
Sbjct: 83  PRYIFTMLSPLTRLIFHPHDDPLLTYLRD--DNQKIEPVWYMPIIPMVLVNGAEGIGTGW 140

Query: 188 ATSIPSHNVQEI 199
            T IP+HN +E+
Sbjct: 141 MTKIPNHNPREV 152


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYI-IGPDFPTGGIIV 233
           MAT+IP HN+ E+     ALI NPE ++++LLEY+   PDFPTGG I+
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIM 48


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y++LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 27/231 (11%)

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           + +++ +  +++RF L+E Q  AIL ++LR L  LE   I++EL  LLA  EK+  +L  
Sbjct: 1   KTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILAD 60

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++  N I  E+ E+KE +    D  R +    E+ +       + +I +E   V++++ 
Sbjct: 61  EQEILNIIKNELIEMKEKYG---DQRRSKMINHELGKFS----DEELIPEEDSVVLLTSE 113

Query: 528 GWI-RSLKSHSVDLS-------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574
            +I R+L S     +        +  KE D ++  + A T D +L  +  G     KAY 
Sbjct: 114 NYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYE 173

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKG 621
           +PA +L   +  G A   L+ L   + I     ++   K    L + + KG
Sbjct: 174 VPAASL---QAKGVAAVNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKG 221


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 25/172 (14%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKS-------ARIVGEV--IGKLHPHGDQSVYDSLVR 100
           FKP  R+++             FK++       A++ G V  +   H HG+Q++  ++V 
Sbjct: 1   FKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTIVN 49

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F  
Sbjct: 50  LAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLY 109

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
             N+   EP  +    P +L NG  GI  G A  +P+++ +EI      ++D
Sbjct: 110 DDNQR-VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLD 160


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+A  F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +LNS  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILNSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            V+E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LVREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAY 129
           A++ G V  +   H HG+Q++  ++V LAQ FV      L+   G FG     G  AA+ 
Sbjct: 1   AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+   VD++ + F    N+   EP  +    P +L NG  GI  G A 
Sbjct: 60  RYIFTMLSSLARLLFPAVDDNLLKFLYDDNQR-VEPEWYIPIIPMVLINGAEGIGTGWAC 118

Query: 190 SIPSHNVQEICE 201
            +P+++ +EI +
Sbjct: 119 KLPNYDAREIVD 130


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 144/311 (46%), Gaps = 25/311 (8%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           L++  I+ I +N    K  +V+ F  TE Q +AI+ L+L  L   +   ++ E D L   
Sbjct: 4   LHLSVILKIKKN---AKDNLVAEFDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNL 60

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS--RADKATLQQAMI 515
            + +  +L+      N I  E+ E+++ F   TD  R  T   E+S  + DK    + M+
Sbjct: 61  IKDLRHILDDHDALLNVIKNELTEIRKKFK--TD--RLSTIEAEISEIKIDK----EVMV 112

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHTTDRILLLSTDGKA 572
             E + + ++  G+I+   + S + S +     K+GDSL   L  +T D  L+ +  G+ 
Sbjct: 113 PSEEVVLSLTRHGYIKRTTTRSFNASGVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRY 172

Query: 573 YTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEE 628
             +P   L   R    G+ +  ++ ++ ++ ++  F     S  +   + +  N  I + 
Sbjct: 173 LFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVIDVFNEKDFSQHEAFYIMATRNGMIKKS 232

Query: 629 S-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMS-R 683
           S      TR  K    +KV  ++++  +++V  D +  V  ++ + L +S +++ +   R
Sbjct: 233 SVPQFKTTRYNKPLIAMKVKDQDEVINIMRVESDQLITVITHKGMSLTYSTNELSDTGLR 292

Query: 684 GKGVRLQSYKD 694
             GV+  + KD
Sbjct: 293 AAGVKSINLKD 303


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D +
Sbjct: 4   IRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGM 63

Query: 310 RIVLFPKNRSL 320
           RIV+  K  ++
Sbjct: 64  RIVIEVKRDAV 74


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 18/169 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LNS ++    I  E+ 
Sbjct: 18  YYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIREELE 77

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--SLKSHS 537
            +K  +S     GRR     E++ A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 78  AIKTQYSD----GRR----TEIT-ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                    SA   KE D +   L A+T D IL  S+ G+ Y +    L
Sbjct: 129 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 177


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 4  DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
          +N+ NS       VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++
Sbjct: 13 ENLDNST------VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLY 62


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 142/325 (43%), Gaps = 50/325 (15%)

Query: 398 LNIDEIIAIIRNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++I E I +I   D P   M     ++L++ Q  AIL LRL+ L ++   ++  EL  L 
Sbjct: 8   MDIAEYIKLI---DDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDELQELA 64

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           A+      +L+S ++    I  E+ EV++ F+       RRT   E++        + +I
Sbjct: 65  AKIRDYLDILSSRERILAIIEGELTEVRDQFAVP-----RRT---EIADWAGDLDDEDLI 116

Query: 516 EKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           E+E + V +++ G+I        RS K     LS++  K+ D +     A+T  ++L  +
Sbjct: 117 EREDMVVTVTSGGYIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFT 176

Query: 568 TDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSS 619
           TDG  Y L    L L+ R   G+AI  ++ +     I      D         + +  +S
Sbjct: 177 TDGMVYKLKCWRLPLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATS 236

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G+      S+     R GK  +K+   E + LV       V +  E+  +L+ +     
Sbjct: 237 DGDVRRNALSDFTNVMRNGKIAMKLP--EGVSLV------DVKIASEDDDVLLVT----- 283

Query: 680 EMSRGKGVRLQSYKDGGISDVICFK 704
             + G+ +R Q+      +DV  FK
Sbjct: 284 --NSGRAIRFQT------TDVRVFK 300


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LNS ++    I  E+ 
Sbjct: 18  YYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIREELE 77

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--SLKSHS 537
            +K  +S       RRT       A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 78  AIKTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                    SA   KE D +   L A+T D IL  S+ G+ Y +    L
Sbjct: 129 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 177


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LN+ ++    I  E+
Sbjct: 17  RYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNNPERLMEVIREEL 76

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537
             +K  +S       RRT   E++        + +I +E + V +S++G+++   L  + 
Sbjct: 77  EAIKTQYSDE-----RRT---EITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                    SA   KE D +   L A+T D IL  S+ G+ Y +    L
Sbjct: 129 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 177


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 182/437 (41%), Gaps = 47/437 (10%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYIS---VQLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID--NPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +D  NP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPK---HELLHYAIKHKIT 895

Query: 228  TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
               +   +        R G+  +        E+       I +TE+P +V     IE I 
Sbjct: 896  ILPLRPSNYNFKGHLKRFGQYYYSYGTYVISEQRN----IITITELPLRVPTVAYIESIK 951

Query: 288  ELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET--RFPLNMN 344
            +   + R+  +E+I D  S+E + I++  K  SL  + +ME      + ++   F    N
Sbjct: 952  K--SSNRMTFIEEIIDYSSSETIEILVKLKPNSL--NRIMEEFKCTEEQDSIENFLRLRN 1007

Query: 345  VLSMGRVPQVMPLDG---------ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
             L    +  V P  G         IL  WL +RRE L+++   R  A+ +   I++  ++
Sbjct: 1008 CLH-SHLNFVKPKGGIIEFNTYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIV 1065

Query: 396  AYLNIDEIIAIIRNEDK 412
             Y+N    + +   ED+
Sbjct: 1066 RYINESAELNLSHYEDE 1082


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 182/437 (41%), Gaps = 47/437 (10%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYIS---VQLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID--NPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +D  NP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPK---HELLHYAIKHKIT 895

Query: 228  TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
               +   +        R G+  +        E+       I +TE+P +V     IE I 
Sbjct: 896  ILPLRPSNYNFKGHLKRFGQYYYSYGTYVISEQRN----IITITELPLRVPTVAYIESIK 951

Query: 288  ELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET--RFPLNMN 344
            +   + R+  +E+I D  S+E + I++  K  SL  + +ME      + ++   F    N
Sbjct: 952  K--SSNRMTFIEEIIDYSSSETIEILVKLKPNSL--NRIMEEFKCTEEQDSIENFLRLRN 1007

Query: 345  VLSMGRVPQVMPLDG---------ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
             L    +  V P  G         IL  WL +RRE L+++   R  A+ +   I++  ++
Sbjct: 1008 CLH-SHLNFVKPKGGIIEFNTYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIV 1065

Query: 396  AYLNIDEIIAIIRNEDK 412
             Y+N    + +   ED+
Sbjct: 1066 RYINESAELNLSHYEDE 1082


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 182/440 (41%), Gaps = 53/440 (12%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               GL   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GLKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID--NPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A ID  NP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYIDKNNPK---HELLHYAIDHKIT 895

Query: 228  TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
               +   +        R G+  +        E+       I +TE+P +V     IE I 
Sbjct: 896  VLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQRNM----ITITELPLRVPTVAYIESIK 951

Query: 288  ELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            +   + R+  +E+I D  S+E + I++      L P+ L   I    + E +  +  N L
Sbjct: 952  K--SSNRMAFIEEIVDYSSSETIEILV-----KLKPNSLSRIIEEFKETEEQNSIE-NFL 1003

Query: 347  SM-----GRVPQVMPLDG---------ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
             +       +  V P  G         IL  WL +RR+ L+++   R +A+ +   I++ 
Sbjct: 1004 RLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRD-LYQKRLMRERAVLKLRIIMET 1062

Query: 393  LLIAYLNIDEIIAIIRNEDK 412
             ++ Y+N    + +   ED+
Sbjct: 1063 AIVRYINESADLNLSHYEDE 1082


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y +LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 184/435 (42%), Gaps = 43/435 (9%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +  DNP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPK---HELLHYAIKHKI- 894

Query: 228  TGGIIVESRESIVE-SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                I+  R S       L R G +    +   ++      I +TE+P +V     IE I
Sbjct: 895  ---TILPLRPSNYNFKGHLKRFG-QYYYSYGTYDISEQRNIITITELPLRVPTVAYIESI 950

Query: 287  AELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFMLSDMETR 338
             +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI     +   
Sbjct: 951  KK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNC 1008

Query: 339  FPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
               ++N V   G + +      IL  WL +RRE L+++   R  A+ +   I++  ++ Y
Sbjct: 1009 LHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIVRY 1067

Query: 398  LNIDEIIAIIRNEDK 412
            +N    + +   ED+
Sbjct: 1068 INESAELNLSHYEDE 1082


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 184/435 (42%), Gaps = 43/435 (9%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +  DNP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPK---HELLHYAIKHKI- 894

Query: 228  TGGIIVESRESIVE-SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                I+  R S       L R G +    +   ++      I +TE+P +V     IE I
Sbjct: 895  ---TILPLRPSNYNFKGHLKRFG-QYYYSYGTYDISEQRNIITITELPLRVPTVAYIESI 950

Query: 287  AELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFMLSDMETR 338
             +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI     +   
Sbjct: 951  KK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNC 1008

Query: 339  FPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
               ++N V   G + +      IL  WL +RRE L+++   R  A+ +   I++  ++ Y
Sbjct: 1009 LHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIVRY 1067

Query: 398  LNIDEIIAIIRNEDK 412
            +N    + +   ED+
Sbjct: 1068 INESAELNLSHYEDE 1082


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 100/209 (47%), Gaps = 33/209 (15%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           M+SRF L + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I 
Sbjct: 1   MISRFGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIY 60

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS 535
            E+ ++++ F       +RRT   E+  ++  +++ + +IEK+ I + +++ G+I+ +  
Sbjct: 61  DELLDIQKRFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPI 112

Query: 536 HSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT------------- 574
                       +  +  ++GD ++  +++ T D +L  +  GK Y+             
Sbjct: 113 QEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAA 172

Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             LP  NLL     GE +Q +I++    D
Sbjct: 173 KGLPVVNLLQLE-KGEKVQTVINIPEGAD 200



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L AL  K+GD L   L       IL+ +  G A T   G++ +  G   A    I+L  +
Sbjct: 229 LIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRA-MGRTAAGVRGINLREH 287

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
             +V + +  +  ++LV+S KG       SE     R GK     +  EK   +  VT  
Sbjct: 288 DYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTII 347

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
              + V V+  +  ++ F ID + +  R   GVRL
Sbjct: 348 NSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRL 382


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 184/435 (42%), Gaps = 43/435 (9%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +  DNP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPK---HELLHYAIKHKI- 894

Query: 228  TGGIIVESRESIVE-SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
                I+  R S       L R G +    +   ++      I +TE+P +V     IE I
Sbjct: 895  ---TILPLRPSNYNFKGHLKRFG-QYYYSYGTYDISEQRNIITITELPLRVPTVAYIESI 950

Query: 287  AELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFMLSDMETR 338
             +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI     +   
Sbjct: 951  KK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNC 1008

Query: 339  FPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
               ++N V   G + +      IL  WL +RRE L+++   R  A+ +   I++  ++ Y
Sbjct: 1009 LHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIVRY 1067

Query: 398  LNIDEIIAIIRNEDK 412
            +N    + +   ED+
Sbjct: 1068 INESAELNLSHYEDE 1082


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 18/169 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  +E  ++  E   LLAE  ++  +LNS ++    I  E+ 
Sbjct: 18  YYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIAELLYILNSPERLMEVIREELE 77

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--SLKSHS 537
            +K  +S       RRT       A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 78  AIKTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                    SA   KE D +   L A+T D IL  S+ G+ Y +    L
Sbjct: 129 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 177


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+H + ++         K A + G+ +   HPHGD ++ D+LV +A     
Sbjct: 2   DGLKPVQRRILHTLYKI---HDGKLHKVANVAGQTMA-YHPHGDAAIIDALVNMA----N 53

Query: 108 RYPLISGQGNFGNI-DGDSA 126
           +   +  QGNFGNI  GD A
Sbjct: 54  KGFFLDCQGNFGNIYTGDPA 73


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I  E+
Sbjct: 17  QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREEL 76

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 77  ELIRDQF------GDKRRTEITANTADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
           + +      SA   KE D +   L A+T D IL  S+ G     K Y LP  N
Sbjct: 129 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAN 181


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 30/36 (83%)

Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 4  YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|116489838|gb|ABJ98822.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 34

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF 33


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 45/226 (19%)

Query: 395 IAYLNIDEIIAIIRNE----DKPKPVMVSR-------------------------FSLTE 425
           +A  NIDE++A IR+     +  + +M  R                         ++L+E
Sbjct: 1   MAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSE 60

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S ++    I+ E+ EVK+ 
Sbjct: 61  AQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQ 120

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           F+       RRT   + S        + +I +E + V +++ G+I        RS +   
Sbjct: 121 FAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGG 172

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
             +S +  KE D +     A+T  ++L  +TDG  Y L    L  G
Sbjct: 173 KGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQG 218


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 598 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYSPIIPMVLVNGAEGIGTG 691


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+YDSLVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 181/434 (41%), Gaps = 41/434 (9%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 724

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               G+   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 725  ---GVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 781

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 782  IGSFGSRHLGGKDAGSPRYIS---VQLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 838

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI--DNPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +  DNP+    +LL Y I     
Sbjct: 839  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPK---HELLHYAIKHKIT 895

Query: 228  TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
               +   +        R G+  +        E+       I +TE+P +V     IE I 
Sbjct: 896  ILPLRPSNYNFKGHLKRFGQYYYSYGTYVISEQRN----IITITELPLRVPTVAYIESIK 951

Query: 288  ELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFMLSDMETRF 339
            +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI     +    
Sbjct: 952  K--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCL 1009

Query: 340  PLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              ++N V   G + +      IL  WL +RRE L+++   R  A+ +   I++  ++ Y+
Sbjct: 1010 HSHLNFVKPKGGIIEFNTYYEILYAWLPYRRE-LYQKRLMREHAVLKLRIIMETAIVRYI 1068

Query: 399  NIDEIIAIIRNEDK 412
            N    + +   ED+
Sbjct: 1069 NESAELNLSHYEDE 1082


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++I+A  +  L       +    V E  G  + HG+ S+Y ++V 
Sbjct: 650 RSIPSVLDGLKPGQRKVIYACFKRNLKSEIKVAQLGGYVSEHTG--YHHGEPSLYQTIVG 707

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG     G  +AA RY    + ++   I   +D+  +    
Sbjct: 708 LAQDFVGSNNIYLLKPNGAFGTRATGGKDSAAPRYIFTELNKITRKIFNSLDDPLL---- 763

Query: 157 TYNEEDSEPV 166
           TY ++D + V
Sbjct: 764 TYIQDDEQTV 773


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 18/169 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  +E  ++  E   LLAE  ++  +LNS ++    I  E+ 
Sbjct: 18  YYLTEPQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIAELLYILNSPERLMEVIREELE 77

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--SLKSHS 537
            +K  +S       RRT       A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 78  AIKTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
                    SA   KE D +   L A+T D IL  S+ G+ Y +    L
Sbjct: 129 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 177


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 27/33 (81%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           IGK HPHGD +VY+++VR+AQPF  RY L+ GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +LNS ++    I  E+
Sbjct: 7   RYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLHILNSPERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--SLKSH 536
             +   +S       RRT       A+ A +  + +I +E + V +S++G+++   L  +
Sbjct: 67  EAINTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDY 117

Query: 537 SVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                     SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 118 EAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             V+E F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELVREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+
Sbjct: 7   RYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             V E F      G  R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELVDEQF------GDERRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 23/175 (13%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI--------GKLHPHG 90
           K  +IP + DG +P  R+++             FK++ +   EVI           +  G
Sbjct: 3   KYHSIPSVMDGLRPTQRKVLFT----------CFKRNDKDKVEVIKLAGSVAADSAYREG 52

Query: 91  DQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQG 146
           + S+  +++ LAQ FV      L+   G FG  +  G  AA+ RY    ++++A  I   
Sbjct: 53  EASLMGTIIGLAQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHP 112

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            D+  +  +   NEE  EP  +    P +L NGTSGI  G        N + I +
Sbjct: 113 SDDPLLKHQIDSNEE-IEPESYVPIIPMILINGTSGIGTGGMIDFLKFNPRHIVD 166


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            V+E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LVREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            V+E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LVREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 151/362 (41%), Gaps = 77/362 (21%)

Query: 41   RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            R+IP + DGFKP  R+I++   +  L       + A  +GE     + HGDQS+  S++ 
Sbjct: 740  RSIPSMLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYIGE--HSAYHHGDQSLIQSIIG 797

Query: 101  LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            LAQ FV      L+   G FG+    G  A+A RY    ++++ +               
Sbjct: 798  LAQDFVGSNNLNLLQPIGGFGSRAQGGKDASAARYIFTDLSKITKKNF------------ 845

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
                                     GI  G +T+IP  N  +I      L+D  E  +E+
Sbjct: 846  ----------------------SCQGIGTGWSTNIPPFNPVDIVANIRRLMDGQE--MEE 881

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            ++ +  G +   G I            ++    FR+     +E++   +  I +TEIP +
Sbjct: 882  MIPWYRGWN---GSIT-----------KISADKFRMEGN--IEQIDDET--IEITEIPAK 923

Query: 277  VQKSRLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                 + E +   I    K+   ++D+ ++   D++ V+     +L  + + +S+ M   
Sbjct: 924  TWTINMKEFLLNGIAGSEKQKSWIKDMEEQHGMDLKFVI-----TLTKEEMKKSLQM--G 976

Query: 335  METRFPL--NMNVLSM------GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++ RF L   +NV +M      G++ +   ++ I++++   R +   RR     + +  +
Sbjct: 977  LKERFKLITTINVGNMVAFDAAGKIKKYDNVNEIIEDYYHVRLDFYQRRKDHLAEVLGNQ 1036

Query: 387  VE 388
            +E
Sbjct: 1037 LE 1038


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 598 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 691


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 90/451 (19%), Positives = 182/451 (40%), Gaps = 75/451 (16%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
            G D +S +     E+V+   L +   +  + + + ++ +K R+IP L DG KP  R+I+ 
Sbjct: 684  GSDEVSTT-----EDVEKTELNYEEFVNSQLMQFGMADLK-RSIPSLIDGLKPSQRKILW 737

Query: 60   AMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQG 116
             + +M         K +++ G V  +  + HG++S+  ++VR+ Q F      PL+   G
Sbjct: 738  TLLKMD---ETTEMKVSQLAGAVAHRQSYHHGEESLVRTIVRMGQTFCGASNMPLLQPIG 794

Query: 117  NFGN------IDGDSAAAYRYTEAR--------------------------MTQVAELIL 144
             FG       I        R++E R                          +     L+ 
Sbjct: 795  QFGTRHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLF 854

Query: 145  QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
               D+D ++ +        EP       P +L NGT GI  G +T + + N  ++ +   
Sbjct: 855  PIADDDLLE-KKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIR 913

Query: 205  ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
              ID   + + ++  +    D+  G I     E +  +  +  G  ++      E     
Sbjct: 914  RKIDLSSLVVNEIPPFY--EDY-KGKI-----EIVTPTKFISTGKIKISR---PERKNAS 962

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSL--- 320
            ++ + ++E+P  V  S+  EK++ ++  +++P+ E     + + V   ++F + ++    
Sbjct: 963  TFSVEISELPIGVWTSKYKEKLSNIL--EKLPITEFSERHTEKQVNFRLIFDRKKAARFL 1020

Query: 321  ---DPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVM-PLDGILKEWLAHRREVLFR 374
               + DLL       S  E R  F  N  +   G V ++      I K+    R E+  R
Sbjct: 1021 QKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKR 1080

Query: 375  RSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +++ ++ +V      L  Y+N  E++ 
Sbjct: 1081 ECEAKLKYVNNQVH-----LYYYMNFIELVT 1106


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 562 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 614

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 615 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 673

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 674 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 708


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +L S ++    I  E+
Sbjct: 7   RYYLTEQQAQAILDLRLQKLTGLEHERLLDEYKELLAQIAELLYILESPERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHS 537
             +K  +S       RRT    V+ AD     + +I +E + V +S++G+++   L  + 
Sbjct: 67  EAIKAQYSDE-----RRTEIT-VNTADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                    SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 598 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 691


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 533 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 585

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 586 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 644

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 645 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 679


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            ++E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LIREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 32/51 (62%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           +G D+  A+KKSAR+VG+VIGK HPHGD +V          F  RY L+ G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAAFSLRYMLVDG 52


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSLS 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 598 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCHPSD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 691


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 18/162 (11%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +LNS ++    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLHILNSPERLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRS--LKSHS 537
            +   +S     GRR     E++ A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 68  AINTQYSD----GRR----TEIT-ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                    SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I  E+
Sbjct: 17  QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIAELLRILGSSERLMEVIREEL 76

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 77  ELIRDQF------GDKRRTEITANTADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYE 128

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579
           + +      SA   KE D +   L A+T D IL  S+ G     K Y LP  N
Sbjct: 129 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAN 181


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 32/202 (15%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +++F L + Q +AIL++RL  L  LE  ++ +EL  +L   EK+D++L S     N I  
Sbjct: 1   MAKFGLFKLQSNAILDMRLSKLPGLEREKLAAELKEILELIEKLDAILKSETLIGNIIRV 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F        +     ++         + +I  E + V I++RG+I+ + S S
Sbjct: 61  ELLEIKSKF--------KCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKS 112

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRI-----------LLLSTDG------KAYTLPAGNL 580
            +      K G   K+A+  +  D I           L+  TD       K Y +P G  
Sbjct: 113 YEKQ----KRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEG-- 166

Query: 581 LSGRGHGEAIQLLIDLNHNQDI 602
            S    G+A+  LI L  ++ I
Sbjct: 167 -SRTAKGKAVVNLISLQADEKI 187


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
          L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M
Sbjct: 2  LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGM 51


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S  
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEMSSS 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+S  G +G  D  G   A+ RY    +  +  L+    D D 
Sbjct: 598 STIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIFTEIAPLTRLLCHPAD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTG 691


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +   F+KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 184/442 (41%), Gaps = 57/442 (12%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    + + +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 666  GVVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 723

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               GL   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 724  ---GLKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 780

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 781  IGSFGSRHLGGKDAGSPRYIS---VQLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 837

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID--NPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +D  NP+    +LL Y I     
Sbjct: 838  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPK---HELLHYAI----- 889

Query: 228  TGGIIVESRESIVESYRLGRGGFRVR-ARWCVEEVGRGSWC-------IVVTEIPYQVQK 279
                    R+  V   R     F+    R+       G++        I +TE+P +V  
Sbjct: 890  -------ERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQRNIITITELPLRVPT 942

Query: 280  SRLIEKIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFM 331
               IE I +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI  
Sbjct: 943  VAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIEN 1000

Query: 332  LSDMETRFPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
               +      ++N V   G + +      IL  WL +RR+V +++   R +A+ +   I+
Sbjct: 1001 FLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDV-YQKRLMRERAVLKLRIIM 1059

Query: 391  KGLLIAYLNIDEIIAIIRNEDK 412
            +  ++ Y+N    + +   ED+
Sbjct: 1060 ETAIVRYINESADLNLSHYEDE 1081


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     AF+K
Sbjct: 4  EKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRK 63

Query: 75 SAR 77
          SA+
Sbjct: 64 SAK 66


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            V+E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LVREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 99/442 (22%), Positives = 184/442 (41%), Gaps = 57/442 (12%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    + + +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 666  GVVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG- 723

Query: 62   SEMGLDFGAAFKKSARIV---GEVIGKL-HPHGDQSVYDSLVRLAQPF---VQRYPLISG 114
               GL   A+  +  ++    G V   + + HGD S+  S+++ AQ +      YP+  G
Sbjct: 724  ---GLKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIG 780

Query: 115  QGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED---SEPVVFP 169
             G+FG  ++ G  A + RY      Q+A   ++ +      +   Y  ED   +EP  + 
Sbjct: 781  IGSFGSRHLGGKDAGSPRYIS---VQLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYV 837

Query: 170  SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID--NPEISIEKLLEYIIGPDFP 227
               P  +    +  + G   +  +  +++I     A +D  NP+    +LL Y I     
Sbjct: 838  PVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPK---HELLHYAI----- 889

Query: 228  TGGIIVESRESIVESYRLGRGGFRVR-ARWCVEEVGRGSWC-------IVVTEIPYQVQK 279
                    R+  V   R     F+    R+       G++        I +TE+P +V  
Sbjct: 890  -------ERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVVSEQRNIITITELPLRVPT 942

Query: 280  SRLIEKIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDL-------LMESIFM 331
               IE I +   + R+  +E+I D  S+E + I++  K  SL+  +         +SI  
Sbjct: 943  VAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIEN 1000

Query: 332  LSDMETRFPLNMN-VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
               +      ++N V   G + +      IL  WL +RR+V +++   R +A+ +   I+
Sbjct: 1001 FLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDV-YQKRLMRERAVLKLRIIM 1059

Query: 391  KGLLIAYLNIDEIIAIIRNEDK 412
            +  ++ Y+N    + +   ED+
Sbjct: 1060 ETAIVRYINESADLNLSHYEDE 1081


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            ++E F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 68  LIREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163


>gi|213026408|ref|ZP_03340855.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 52

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS 
Sbjct: 8   KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 52


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R++P + DGF    R+ ++   +          + A  V E      P     +  ++  
Sbjct: 288 RSVPSIMDGFNERQRKTLYTCIKRDYKEEINVAQLAVSVAENCAYYQP---DLLIGTITG 344

Query: 101 LAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G F   +++     +  Y    M+++   I    D+  + +R 
Sbjct: 345 LAQDFVGSNNINLLIPNGQFASRHLESKDVGSPDYIFTMMSKITRKIFHPRDDPLLKYR- 403

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           T   +  EP  F    P +L NG +GI  G  T IP  N +EI E
Sbjct: 404 TDGNQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIE 448


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+Y SLVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 32/230 (13%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  
Sbjct: 1   MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           E+ EVK    K  D  R      EV     +   + +IE+E + + +SN+G+I+ L    
Sbjct: 61  EMDEVKR---KYADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDE 113

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------------- 574
               K     +        D ++  +   T D +L  +  G+ Y                
Sbjct: 114 FRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKG 173

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           LP  NLL     GE IQ +I+    +D+   + + +T + +V  +  + F
Sbjct: 174 LPIVNLLK-LDEGETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 221


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 12/131 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R+IP + DGFKP  R++++   +  L    +  K A++VG +     + HG+ S+  ++V
Sbjct: 655 RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYHHGEGSLAQTIV 711

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            LAQ FV      L+   G FG+    G   +A RY    +T +  +I   +D+D     
Sbjct: 712 GLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLY--- 768

Query: 156 DTYNEEDSEPV 166
            TY ++D++ V
Sbjct: 769 -TYVQDDAQTV 778


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R++P + DGF    R+ ++   +          + A  V E      P     +  ++  
Sbjct: 105 RSVPSIMDGFNERQRKTLYTCIKRDYKEEINVAQLAVSVAENCAYYQP---DLLIGTITG 161

Query: 101 LAQPFV--QRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G F   +++     +  Y    M+++   I    D+  + +R 
Sbjct: 162 LAQDFVGSNNINLLIPNGQFASRHLESKDVGSPDYIFTMMSKITRKIFHPRDDPLLKYR- 220

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           T   +  EP  F    P +L NG +GI  G  T IP  N +EI E
Sbjct: 221 TDGNQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIE 265


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 58 IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
          ++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 218 NVNESMDYSVRQVSYRDFVDKELILFSIADC-ERSIPSAIDGFKPGQRKILFSCFKRNLV 276

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ FV     PL+   G FG     G
Sbjct: 277 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 334

Query: 124 DSAAAYRY 131
              AA RY
Sbjct: 335 KDHAAPRY 342


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 76  ARIVGEV--IGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAY 129
           A++ G V  +   H HG+ S+  +++ LAQ FV      L+   G FG     G  +A+ 
Sbjct: 1   AQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+    D+  + F    N+   EP  +    P +L NG  GI  G + 
Sbjct: 60  RYIFTMLSPLARLLFPSKDDHTLRFLYDDNQR-VEPEWYILIIPMVLINGAEGIGTGWSC 118

Query: 190 SIPSHNVQEICEAALALIDNPE 211
            IP+ +V+E+      L+D  E
Sbjct: 119 KIPNFDVREVVNNIRRLLDGEE 140


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLV 99
           R++P + DG KP  R++I+ + +     G    K   + G +     + HGDQS+  ++V
Sbjct: 645 RSLPCVLDGLKPAQRKVIYGLQKRA---GNREGKVNDLAGYISSNTAYHHGDQSLVMTIV 701

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
            +AQ FV      L+  +GNFG+  + G  A+A RY    ++++ + +   +D
Sbjct: 702 SMAQDFVGANNINLLEPRGNFGSRFMGGKDASAARYIHTCLSEITKSVYNPLD 754


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 588 RSIPSVADGLKPGQRKVIWGC------FKRNLKKEIK-VAQLVGYISEHATYHHGEASLA 640

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G +G  D  G   A+ RY    ++ +  +I    D D 
Sbjct: 641 ATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHASPRYIFTEVSPLTRMICHPAD-DP 699

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 700 LLKRQTDDNLLVEPEWYMPILPLVLVNGADGIGTG 734


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVIWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGETSLA 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ +V      L+   G +G  D  G   A+ RY    +  +  +I    D D 
Sbjct: 598 ATIVNLAQNYVGSNNINLLKPNGQYGTRDQGGKDHASPRYIYTEVMPLTRMICHPAD-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYMPVVPLVLINGAEGIGTG 691


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 554 RSIPSVADGLKPGQRKVIWGC------FKRNLKKEIK-VAQLVGYISEHAAYHHGEASLA 606

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G +G  D  G   A+ RY    ++ +  +I    D D 
Sbjct: 607 ATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHASPRYIFTEVSPLTRMICHPAD-DP 665

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 666 LLKRQTDDNLLVEPEWYMPILPLVLVNGADGIGTG 700


>gi|317498960|ref|ZP_07957243.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893793|gb|EFV15992.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 194

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 24/165 (14%)

Query: 343 MNVLSM--GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           MN+L++  GR P+ + L GI++       EV  R+    +  +  + EI +GL+ A   I
Sbjct: 1   MNMLAIVDGR-PETLDLKGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMI 59

Query: 401 DEIIAIIRNEDKPKPVMV---------------------SRFSLTENQVDAILNLRLRSL 439
           D II IIR     K V                       ++ S T+ Q  AIL+L+L  L
Sbjct: 60  DLIIEIIRGSKSQKEVKACLTKGDVGNINFKSSDSMIEATKLSFTDKQASAILDLKLYRL 119

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             LE   +K E + +LA+ E+ + +LN+ K   N I  E+ ++K+
Sbjct: 120 IGLEILMLKEEYEEILAKIEEYEDVLNNEKSLKNVIRKELDKIKK 164


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E  +LL +  ++  +LNS ++    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLEQIAELLHILNSPERLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRS--LKSHS 537
            +   +S       RRT       A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 68  AINTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                    SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DGFKP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 655 RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQLAGYVSENTG--YHHGEQSLVPTIIG 712

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ F+      ++   G+FG+    G   +A RY    ++++   I   +D+       
Sbjct: 713 LAQNFIGSNNINVLKPNGSFGSRAAGGKDFSAARYIFTELSEITRKIFNPLDDPLY---- 768

Query: 157 TYNEEDSEPV 166
           TY ++D + V
Sbjct: 769 TYVQDDEQTV 778


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSSDRLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             ++E F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELIREQF------GDKRRTEITANSADINL--EDLITQEDVVVTLSHQGYVKYQPLSEYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELIRDQF------GDKRRTEITANSADINI--EDLINQEDVVVTLSHQGYVKYQPLTDYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I  E+ 
Sbjct: 4   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREELE 63

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
            +++ F      G +R T    + AD     + +I +E + V +S++G+++        +
Sbjct: 64  LIRDQF------GDKRRTEITANTADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYEA 115

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            +      SA   KE D +   L A+T D IL  S+ G+
Sbjct: 116 QRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGR 154


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSDRLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G +R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELIRDQF------GDKRRTEITANSADINM--EDLINQEDVVVTLSHQGYVKYQPLTEYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGND 34


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R++I         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 405 RSIPSVADGLKPGQRKVIWGC------FKRNLKKEIK-VAQLVGYISEHAAYHHGEASLA 457

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G +G  D  G   A+ RY    ++ +  +I    D D 
Sbjct: 458 ATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHASPRYIFTEVSPLTRMICHPED-DP 516

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 517 LLKRQTDDNLLVEPEWYMPILPLVLVNGADGIGTG 551


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R +I A       F    KK  + V +++G +     + HG+ S+ 
Sbjct: 549 RSIPSVADGLKPGQREVIWAC------FKRKLKKEIK-VAQLVGYVSEHAAYHHGEASLA 601

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ FV      L+S  G +G  D  G   AA RY    +  +   +    D+  
Sbjct: 602 ATIVSLAQDFVGSNNVNLLSPNGQYGTRDQGGKDHAAPRYIFTDLPPLTRALYHPSDDPL 661

Query: 152 VDFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVG 186
           +  +    ++D+   EP  +    P +L NG  GI  G
Sbjct: 662 LAVQ----KDDNLVIEPEYYVPVIPLVLVNGAEGIGTG 695


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 18/162 (11%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +LNS ++    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILNSPERLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRS--LKSHS 537
            +   +S       RRT       A+ A +  + +I +E + V +S++G+++   L  + 
Sbjct: 68  AIDTQYSDE-----RRTEIT----ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSEYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                    SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELIYILESAERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHS 537
             +++ F      G +R T    + AD     + +I +E + V +S++G+++   L  + 
Sbjct: 67  ELIRDQF------GDQRRTEITANSADINI--EDLINEEDVVVTLSHQGYVKYQPLSDYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                    SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 11/110 (10%)

Query: 97  SLVRLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           ++V LAQ FV      L+   G FG     G  +A+ RY    ++ +A L+   VD++ +
Sbjct: 6   TIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLL 65

Query: 153 DFRDTYNEEDS---EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
                YN +D+   EP  +    P +LANG  GI  G A+ IP+++V+EI
Sbjct: 66  ----KYNYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREI 111


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 25/159 (15%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R+++ A       F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVMWAC------FKRKLKKEIK-VAQLVGYIGEQAAYHHGEVSLA 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            ++V LAQ FV      L+  +G +G  +  G + A+ RY   +   ++ +I    D+  
Sbjct: 598 QTIVNLAQNFVGSNNLNLLDPRGQYGTREQGGKNHASPRYIFTQPMSISRVIFNPADDAL 657

Query: 152 VDFRDTYNEEDSEPVVFPSKF----PNLLANGTSGIAVG 186
           ++      ++D   V+ P  +    P  L NG  GI  G
Sbjct: 658 LN-----AQKDDNMVIEPEWYMPIVPMTLINGAEGIGTG 691


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           +   F KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI
Sbjct: 2   YDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLI 46


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D AA  RYTEA+++
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPAAM-RYTEAKLS 47


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I  E+
Sbjct: 7   KYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMKVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G  R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELMRDQF------GDERRTEITANSADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I  E+
Sbjct: 7   KYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G  R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELMRDQF------GDERRTEITANSADINI--EDLINQEDVVVTLSHQGYVKYQPLSDYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163


>gi|213621007|ref|ZP_03373790.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 72

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           M+SRF ++E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S
Sbjct: 1   MMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILAS 51


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 167/416 (40%), Gaps = 59/416 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R I    DG K   R+II+      LD     +    I   ++     +   S    +  
Sbjct: 24  RMIASSIDGLKNSSRKIINT----ALDKKLNTETKVSIFDNMVQSYTQYLHGSCSGVIQN 79

Query: 101 LAQPFV--QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD-- 156
           +A  +      PL+ G+GNFG+   +  AA RY   +  +           D  D +D  
Sbjct: 80  MAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKKYIN--------DLFDIKDVL 131

Query: 157 -TYNEEDSE--PVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            + N E SE  PV +    P L+ NG+ +G+A G   +I                     
Sbjct: 132 ISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPR------------------ 173

Query: 213 SIEKLLEYI-IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC---VEEVGRGSWCI 268
           S++ +++YI  G        I   + ++     L         +W    V EV +     
Sbjct: 174 SLDSVIKYIKTGKKVDLKPYIAGFKGTV----ELVEDASSNNTQWNFIGVVEVNKNKA-- 227

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLME 327
           ++TEIP  ++ ++ +E +  LI +K+I   +D+ D+  ++ +  V+F  N S D  +   
Sbjct: 228 IITEIPPFIEYTKYLEILDNLIESKKIKNYKDLSDQRNQEFKFEVIFFDNISKDKAI--- 284

Query: 328 SIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            I  LS  ET      N L    +V     ++ I+  ++  R+  L ++  F ++ ++  
Sbjct: 285 DILKLSKRETEI---YNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFDLKVLEND 341

Query: 387 VEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--FSLTENQVDAILNLRLRSL 439
           + I ++ L    L ID  + I++   K   + +    F   E+  D +L L + S 
Sbjct: 342 LNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKFEDSYDYLLKLPIHSF 397


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 655 RSIPSVLDGLKPGQRKVLYGCIKKKLKSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 712

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      ++   G+FG+    G   +A RY    + ++   I   +D+   ++  
Sbjct: 713 LAQNFVGSNNINILKPNGSFGSRAAGGKDFSAARYIFTELNEITRKIFNPLDDPLYNYV- 771

Query: 157 TYNEEDSEPVVFP 169
               +D E  V P
Sbjct: 772 ----QDDEQTVEP 780


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R++++   +  L       + A  V E  G  + HG+QS+  +++ 
Sbjct: 655 RSIPSVLDGLKPGQRKVLYGCIKKKLKSEIKVAQLAGYVSENTG--YHHGEQSLVQTIIG 712

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      ++   G+FG+    G   +A RY    + ++   I   +D+   ++  
Sbjct: 713 LAQNFVGSNNINILKPNGSFGSRAAGGKDFSAARYIFTELNEITRKIFNPLDDPLYNYV- 771

Query: 157 TYNEEDSEPVVFP 169
               +D E  V P
Sbjct: 772 ----QDDEQTVEP 780


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 167/416 (40%), Gaps = 59/416 (14%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R I    DG K   R+II+      LD     +    I   ++     +   S    +  
Sbjct: 24  RMIASSIDGLKNSSRKIINT----ALDKKLNTETKVSIFDNMVQSYTQYLHGSCAGVIQN 79

Query: 101 LAQPFV--QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD-- 156
           +A  +      PL+ G+GNFG+   +  AA RY   +  +           D  D +D  
Sbjct: 80  MAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKKYIN--------DLFDIKDVL 131

Query: 157 -TYNEEDSE--PVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
            + N E SE  PV +    P L+ NG+ +G+A G   +I                     
Sbjct: 132 ISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPR------------------ 173

Query: 213 SIEKLLEYI-IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC---VEEVGRGSWCI 268
           S++ +++YI  G        I   + ++     L         +W    V EV +     
Sbjct: 174 SLDSVIKYIKTGKKVDLKPYIAGFKGTV----ELVEDASSNNTQWNFIGVVEVNKNKA-- 227

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLME 327
           ++TEIP  ++ ++ +E +  L+ +K+I   +D+ D+  ++ +  V+F  N S D  +   
Sbjct: 228 IITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQEFKFEVIFFDNISKDKAI--- 284

Query: 328 SIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            I  LS  ET      N L    +V     ++ I+  ++  R+  L ++  F ++ ++  
Sbjct: 285 DILKLSKRETEI---YNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFDLKVLEND 341

Query: 387 VEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--FSLTENQVDAILNLRLRSL 439
           + I ++ L    L ID  + I++   K   + +    F   E+  D +L L + S 
Sbjct: 342 LNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKFEDSYDYLLKLPIHSF 397


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L+S ++    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSSERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G  R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELMRDQF------GDDRRTEITANSADINI--EDLINQEDVVVTLSHQGYVKYQPLSEYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|312207859|pdb|3KUA|A Chain A, Ccdbvfi:gyra14vfi
 gi|312207860|pdb|3KUA|B Chain B, Ccdbvfi:gyra14vfi
          Length = 153

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 37/133 (27%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------- 420
           + RR+ F ++    R  IL+GL +A  NIDEII +I+N   P   K  ++SR        
Sbjct: 21  MTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVA 80

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + LTE Q  AIL LRL  L  LE  +I  E   L
Sbjct: 81  SMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKAL 140

Query: 455 LAEKEKIDSLLNS 467
           L E  ++  +L S
Sbjct: 141 LDEIAELMHILAS 153


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +L + ++    I  E+
Sbjct: 7   RYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLYILANPERLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHS 537
             +KE +        RRT   E++        + +I +E +   +S++G+++   L  + 
Sbjct: 67  EVIKEQYRDE-----RRT---EITHNTADINIEDLICQEDVVATLSHQGYVKYQPLSDYE 118

Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
                    SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDPA 36


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++    +  L       + A  V E  G  + HG+ S+  +++ 
Sbjct: 652 RSIPSVLDGLKPGQRKVLFGCFKRNLKSEIKVAQLAAYVSENTG--YHHGEVSLVQTIIG 709

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      ++   G FG+    G  AAA RY    +  + + I   +D        
Sbjct: 710 LAQNFVGSNNINILKPNGAFGSRATGGKDAAAARYIFTELNDITKAIFNPLDNPIY---- 765

Query: 157 TYNEEDSEPV 166
           TY ++D + V
Sbjct: 766 TYVQDDEQTV 775


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDPA 36


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-----HPHGDQSVY 95
           R+IP + DG KP  R+++         F    KK  + V +++G +     + HG+ S+ 
Sbjct: 545 RSIPSVADGLKPGQRKVVWGC------FKRKLKKEIK-VAQLVGYISEHAAYHHGEASLA 597

Query: 96  DSLVRLAQPFV--QRYPLISGQGNFGNID--GDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +++ LAQ +V      L+   G +G  D  G   A+ RY    +  +  +I      D 
Sbjct: 598 ATIINLAQNYVGSNNINLLKPNGQYGTRDQGGKDHASPRYIYTEVMPLTRMICHPAG-DP 656

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  R T +    EP  +    P +L NG  GI  G
Sbjct: 657 LLKRQTDDNLLVEPEWYMPVVPLVLVNGAEGIGTG 691


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSL 98
           E +IP L DG KP  R+I+  + +M         K +++ G V  +  + HG++S+  ++
Sbjct: 702 EESIPSLIDGLKPSQRKILWTLLKMD---ETTEMKVSQLAGAVAHRQSYHHGEESLVRTI 758

Query: 99  VRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRY 131
           VR+ Q F      PL+   G FG  +  G+ AA+ RY
Sbjct: 759 VRMGQTFCGASNMPLLQPIGQFGTRHEGGNDAASARY 795


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+IP + DG KP  R+++    +  L       + A  V E  G  + HG+ S+  +++ 
Sbjct: 652 RSIPSVLDGLKPGQRKVLFGCFKRNLKSEIKVAQLAAYVSENTG--YHHGEVSLVQTIIG 709

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
           LAQ FV      ++   G FG+    G  AAA RY    +  + + I   +D
Sbjct: 710 LAQNFVGSNNINILKPNGAFGSRATGGKDAAAARYIFTELNDITKAIFNPLD 761


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L++  +    I  E+
Sbjct: 7   QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELLRILSNADRLMEVIREEL 66

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             +++ F      G  R T    + AD     + +I +E + V +S++G+++        
Sbjct: 67  ELMRDQF------GDERRTEITANTADINI--EDLINQEDVVVTLSHQGYVKYQPLTDYE 118

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 119 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 46.2 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+L RLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 112/263 (42%), Gaps = 32/263 (12%)

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  ++ GR P+ + L GILK +L  + E   R+ +  ++    + EI +GL+ A   ID 
Sbjct: 1   MLAIAGGR-PETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDL 59

Query: 403 IIAIIRNEDKPKPVMVS---------------------RFSLTENQVDAILNLRLRSLRK 441
           IIAI+R     K                          +   TE Q  AIL +RL  L  
Sbjct: 60  IIAILRGSKNLKDAKACLMEGDISNIHFKTPGFDEDARKLRFTEKQASAILEMRLYKLIG 119

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE   ++ E    L + ++ + +L+S     + I  ++ E+K  F+       RRT    
Sbjct: 120 LEILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATP-----RRTL--- 171

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
           +    +A   +  +E   +  V+   G+ + +   + D +     EG++  + +    TD
Sbjct: 172 IEDGKEAVYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQETI-EGENPHV-IPCLNTD 229

Query: 562 RILLLSTDGKAYTLPAGNLLSGR 584
           +I L +  G  + + A ++  G+
Sbjct: 230 KICLFTDTGLLHQVKASDIPFGK 252


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           +L  +D++ VDF   Y+  + EP V P++ PNLL NG++GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILL 565
           +++KE I V+++ +G+++ L  +   L        S+    +GD + IAL  +T D + +
Sbjct: 4   LMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFM 63

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           +S +GK Y + A  +   S    G+ I  LI+L   ++I+T
Sbjct: 64  ISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILT 104


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           R+I  + DGFKPV R+I++A  +  L       +    + E  G  + HGD S+  S++ 
Sbjct: 677 RSIASVMDGFKPVQRKILYACYKRNLRDEIKVSQLEGYIAEHTG--YHHGDASLMQSIIG 734

Query: 101 LAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ FV      L+   G FG+    G  AAA RY    ++ +   I   +D   +    
Sbjct: 735 LAQDFVGSNNINLLVPHGGFGSRAAGGKDAAAARYIFTELSAITRKIFNPLDNPLL---- 790

Query: 157 TYNEEDSEPV 166
           TY ++D + V
Sbjct: 791 TYVQDDEQTV 800


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
          +SL+   EE YL YA+  I +RA+P++ DG KPV RRI
Sbjct: 10 ISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRI 47


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R P +   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDPA 36


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDPA 36


>gi|255039923|gb|ACT99718.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 30

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           QGNFG++DGD+AAA RYTE RM ++   +L
Sbjct: 1   QGNFGSVDGDNAAAMRYTEIRMAKIGHELL 30


>gi|218658400|ref|ZP_03514330.1| hypothetical protein RetlI_01387 [Rhizobium etli IE4771]
          Length = 33

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 23/24 (95%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMG 349
           MES+F L+++E+RFPLNMNVLSMG
Sbjct: 1   MESMFKLTELESRFPLNMNVLSMG 24


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 44.3 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 43.9 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|18104622|gb|AAL59622.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLI 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L + ++    I  E+ E+KE F+
Sbjct: 63  KLIAELKEILANEEKVLEIIREELTEIKERFN 94


>gi|326581989|gb|ADZ96943.1| DNA gyrase A subunit [Klebsiella pneumoniae]
          Length = 134

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 8/112 (7%)

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I  E+
Sbjct: 17  QYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREEL 76

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             +++ F      G +R T    + AD     + +I +E + V +S++G+++
Sbjct: 77  ELIRDQF------GDKRRTEITANPADINI--EDLINQEDVVVTLSHQGYVK 120


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+    NFG    D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDPA 36


>gi|71899875|ref|ZP_00682024.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71730392|gb|EAO32474.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 156

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 7/145 (4%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
           D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T    D +  V 
Sbjct: 5   DNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVT 64

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNR 721
               LL  +  ++PE+ +GKG +L       ++    V    +    T +  +G R+   
Sbjct: 65  SAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMRL 124

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746
           S  DL  +L  RG  G L+P+G+ +
Sbjct: 125 SFKDLEAYLDTRGSRGRLLPRGWHK 149


>gi|2197131|gb|AAB61299.1| GyrA [Streptomyces ambofaciens]
          Length = 88

 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDV 309
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++     
Sbjct: 4   MRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSLRTGQ 62

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDME 336
           R+V+  K R +   +++ +++  +D++
Sbjct: 63  RLVIVLK-RDVVAKVVLNNLYKHTDLQ 88


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLR 33


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           D SVY ++VR+AQ F  RY LI G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|325271255|ref|ZP_08137799.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103615|gb|EGC00918.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 115

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++        + ++  ++D+    I +G T 
Sbjct: 12  DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IADGATL 69

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  AG R+ +   +DL  + G+RG  GS +P+GF R
Sbjct: 70  VLQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQR 105


>gi|18104636|gb|AAL59629.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E   L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQTLV 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L +  +    I  E+ E+KE F+
Sbjct: 63  KLIAELKDILANEYKVLEIIREELTEIKERFN 94


>gi|18104624|gb|AAL59623.1| GyrA [Bacillus subtilis]
 gi|18104626|gb|AAL59624.1| GyrA [Bacillus subtilis]
 gi|18104630|gb|AAL59626.1| GyrA [Bacillus subtilis]
 gi|18104632|gb|AAL59627.1| GyrA [Bacillus subtilis]
 gi|18104638|gb|AAL59630.1| GyrA [Bacillus subtilis]
 gi|18104640|gb|AAL59631.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLV 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L +  +    I  E+ E+KE F+
Sbjct: 63  KLIAELKDILANEYKVLEIIREELTEIKERFN 94


>gi|32481440|gb|AAP84066.1| topoisomerase [Enterococcus casseliflavus]
 gi|32481446|gb|AAP84069.1| topoisomerase [Enterococcus gallinarum]
          Length = 29

 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 23/28 (82%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           A+ VG ++G  HPHGD S+Y+++VR++Q
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQ 28


>gi|18104628|gb|AAL59625.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLV 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L +  +    I  E+ E+KE F+
Sbjct: 63  KLIAELKDILANEYKVLEIIREELMEIKERFN 94


>gi|18104642|gb|AAL59632.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLV 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L +  +    I  E+ E+KE F+
Sbjct: 63  KLIGELKDILANEYKVLEIIREELTEIKERFN 94


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 111 LISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           L+   G FG     G   +A RY   ++ ++   +   +D+   ++    +E   EP  +
Sbjct: 10  LLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLDDPLYNYLQD-DESTVEPEWY 68

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               P LL NG  GI  G +T+IPS N  +I
Sbjct: 69  LPVIPMLLVNGAEGIGTGWSTNIPSFNPADI 99


>gi|18104620|gb|AAL59621.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IR+    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLI 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L + ++    I  E+ E+KE F+
Sbjct: 63  KLIAELKEILANEEKVLEIIREELTEIKERFN 94


>gi|18104634|gb|AAL59628.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 399 NIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           ++D +I++IRN    +     ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLV 62

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
               ++  +L +  +    I  E+ E+KE F+
Sbjct: 63  KLIAELKDILANEYKVLEIIREELTEIKERFN 94


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 23/161 (14%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +E + V 
Sbjct: 7   ILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAREDVVVT 58

Query: 524 ISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +S+ G+++        + +      SA   KE D ++  L A+T D ILL ST GK Y +
Sbjct: 59  LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRM 118

Query: 576 PAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609
               L L+ R   G+ I  L+ L  N+ I     VT F  D
Sbjct: 119 KVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 159


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score = 40.8 bits (94), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI-GKLHPHGDQSVYDSLV 99
           R+IP++ DGFKP  R++++   +          K A++ G V     + HG+ S+  +++
Sbjct: 703 RSIPNMIDGFKPGQRKVLYTCLKRN---DKREVKVAQLAGSVAEHSAYHHGEVSLMSTII 759

Query: 100 RLAQPFV--QRYPLISGQGNFGN--IDGDSAAAYRY 131
            LAQ FV      L+   G FG     G  AA+ RY
Sbjct: 760 NLAQNFVGSNNINLLQPIGQFGTRLAGGKDAASPRY 795


>gi|20142122|dbj|BAB88924.1| gyrase A [Bacillus cereus]
          Length = 50

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 33/48 (68%)

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           ++ HR  V+ RR++ R+     R+ +++GLL+A ++IDE+I IIR  D
Sbjct: 1   YVDHRLTVVRRRTAHRLGKRQDRLHLVEGLLLALVDIDEVIEIIRTSD 48


>gi|254507465|ref|ZP_05119599.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
 gi|219549535|gb|EED26526.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
          Length = 123

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC--E 707
           +  +  D +  +    ++L+F I  +P++++GKG   + + + K     +++   I    
Sbjct: 6   IADLDSDEIVAITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEILSHLIAVPR 65

Query: 708 GLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           G T    AG R      +DL  + G+RG  GSL+P+G  R
Sbjct: 66  GATLTLYAGKRKLGLKPSDLDNFRGERGRRGSLLPRGLQR 105


>gi|153875483|ref|ZP_02003265.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
 gi|152068053|gb|EDN66735.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
          Length = 173

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVG 665
           D+    L+ S  G  F++   ++    + GK  L +  + K+   + +     ++ AVV 
Sbjct: 7   DAEVSFLLASDAGYGFLINLEDLYTKNKAGKAILTLPPDAKILRPLPIAEPETEYYAVVT 66

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEG---LTWIDSAGR 717
               L I  + ++P + +GKGV+L     +S KD     V+   +      +  +    R
Sbjct: 67  SAGYLSIVPVLELPRLPKGKGVKLLGIPAKSKKDK--ESVVALTLLNPEIDILTLYVGKR 124

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                E D+  +  +R   G  +P+GF
Sbjct: 125 HLTLKERDIEAYTMERSRRGQKLPRGF 151


>gi|289809152|ref|ZP_06539781.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 34

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           +IP HN+ E+    LA IDN +ISIE L+E+I
Sbjct: 2   NIPPHNLTEVINGCLAYIDNEDISIEGLMEHI 33


>gi|282891438|ref|ZP_06299934.1| hypothetical protein pah_c171o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498665|gb|EFB40988.1| hypothetical protein pah_c171o002 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 660

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 408 RNEDKPKPVMVSRFSLTEN---QVDAI-LNLRLR-SLRKLEEYQIKSELDNLLAEKEKID 462
           +NE    P++++     E     +DA  L  RL  SL K+EEY  K EL+  L+ KE   
Sbjct: 222 KNEVSQNPILITVLQKNEPVSVYIDANELAQRLHLSLEKIEEYAKKGELEAYLSSKE--- 278

Query: 463 SLLNSGKQQWNQIAC---EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                     +Q+AC    +   K +F K   LGR   +  ++ +   A ++   +   P
Sbjct: 279 ----------DQLACLETVLANYKRLFKKQRLLGRTSLSPEKLMKMIHAFVKSMRVGDPP 328

Query: 520 ITVVISNRGWIRSLKSHSVDLS 541
           + V     G  R  K H VD++
Sbjct: 329 VLVAKKYIGLFRGKKLHIVDMT 350


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 22/186 (11%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + L+E Q DAIL + LR+L  L++ +I     NL+ +      +L+  ++    I  E+ 
Sbjct: 60  YYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELE 119

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+K      T+ G  R +       D A   + +I +  + V +++ G+I++  +     
Sbjct: 120 EIK------TNYGDERRSEINPFGGDIA--DEDLIPQREMVVTLTHGGYIKTQPTTDYQA 171

Query: 541 --------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLS-GRGH 586
                    A   K+ D ++    A+T D ++  +  GK      Y LP G   S GR  
Sbjct: 172 QRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPI 231

Query: 587 GEAIQL 592
              IQL
Sbjct: 232 NNVIQL 237


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           ++L+E Q  AIL+LRL+ L  L   +I  EL+ + AE      +L+S  +    +  E+ 
Sbjct: 53  YNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIVDFLDILSSRARIQQIVKDELI 112

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            V++ F        RRT   E+S        + +I++E + V +S+ G+I+
Sbjct: 113 AVRDEFGTP-----RRT---ELSEGGADMEDEDLIQREDMVVTVSHSGYIK 155


>gi|270013854|gb|EFA10302.1| hypothetical protein TcasGA2_TC012517 [Tribolium castaneum]
          Length = 2020

 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           ++D  L   LRSL  L+E  ++ E+ N+L+  +  D  +N     W+   CE+ + KEIF
Sbjct: 192 EIDRYLGTELRSLTNLKE-NLEQEISNILSNCDLADKHMNENVDIWDD--CELMDAKEIF 248

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K+ +  R      E    D +   + ++  +P  +V+   G+        ++++  HF 
Sbjct: 249 LKTVEFIRN----FEYENTDYSRKIRLVLAHDPNQLVLHVAGY------GDLNIANQHFS 298

Query: 547 EGDSL 551
           +G  +
Sbjct: 299 QGSGM 303


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 131 YTEARMTQ--------VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           Y  AR  Q        +A L+   +D+  + F    N++  EP  +    P +L NG  G
Sbjct: 740 YMHARQPQYLCTMVPPLARLLFPAMDDSVLKFMYDDNQK-VEPEWYIPIIPTVLVNGAEG 798

Query: 183 IAVGMATSIPSHNVQEICEAALALID 208
           I  G +  IP+++ +EI      L+D
Sbjct: 799 IGTGWSCKIPNYDTREIVSNIGRLLD 824


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score = 37.4 bits (85), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 34/174 (19%)

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL---------------GRRRTTFCEVS 503
           EKID+       ++ +I   I+E++E+   +  +                 +R T  E  
Sbjct: 1   EKIDT-------EFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEE 53

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIAL 555
           R +   L + +I+ E I +  +N+G+++ +++            +SAL+  E D  +   
Sbjct: 54  RME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKIT 111

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            A T D I++ +  GK Y + A  +  LS +  G  +  +I+L+  + +    V
Sbjct: 112 SASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIV 165


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 10/134 (7%)

Query: 402 EIIAIIRNEDKPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++ A+IR  D P+  + +   ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +
Sbjct: 32  DVDALIRLIDDPRHRINADGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIK 91

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L+S  +  + +  E+  V++ F        RRT   E++        + +I +E 
Sbjct: 92  DYLDILSSRLRIMSIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQED 143

Query: 520 ITVVISNRGWIRSL 533
           + V +S+ G+I+ +
Sbjct: 144 MVVTVSHLGYIKRV 157


Searching..................................................done


Results from round 2




>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 753/753 (100%), Positives = 753/753 (100%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA
Sbjct: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN
Sbjct: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT
Sbjct: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV
Sbjct: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED
Sbjct: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI
Sbjct: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR
Sbjct: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR
Sbjct: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL
Sbjct: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ
Sbjct: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH
Sbjct: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN
Sbjct: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS
Sbjct: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/752 (85%), Positives = 695/752 (92%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D   NS+ LVEEN  +VSL+ ALEERYLAYALSTIKERAIPD RDGFKPVHRRIIHA
Sbjct: 1   MGSDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGLDF AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ FVQRYPLI GQGNFGN
Sbjct: 61  MSEMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAAYRYTEARMTQVA+LILQGVDE+AVDFRDTYNEEDSEPVVFP KFPNLLANG+
Sbjct: 121 IDGDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHNV+EICEAAL LI++PE S+EKLLE+IIGPDFPTGGIIVESRESI 
Sbjct: 181 SGIAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIF 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+WCVE++GRGSWCIVV+EIPYQVQKSRLIEKIA+LI+ KRIPLLED
Sbjct: 241 ESYRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLED 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVLFPKNRS+DPDLLMES+F+LSD+ETRFPLNMNVLSMGRVPQVM LDG+
Sbjct: 301 IRDESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRSSFRMQAIDRRVE+LKGL IAYLNIDEIIAIIRNEDKPK VM+SR
Sbjct: 361 LKEWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSVMISR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLTENQ DAILNLRLRSLRKLEEYQIKSELDNLL EK+ ++ LLNS K+QW+QIACEIR
Sbjct: 421 FSLTENQADAILNLRLRSLRKLEEYQIKSELDNLLLEKDNLNLLLNSEKKQWDQIACEIR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKEIFSKSTDLGRRRT FCE  + DK  +QQAMIEKEP+TVVIS RGWIRSLK HS+DL
Sbjct: 481 EVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQAMIEKEPVTVVISKRGWIRSLKGHSIDL 540

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL+FKEGD LKIA HA+TT+RILL STDG+AYTLP GNLLSGRGHGEAIQLLID+NHNQ
Sbjct: 541 SALNFKEGDGLKIAFHAYTTERILLFSTDGRAYTLPVGNLLSGRGHGEAIQLLIDINHNQ 600

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+ AFV D TCKLL VS+KGNAFIV+ES+II NTRKGK F KVSS + MKLVVKV GD+
Sbjct: 601 DIMAAFVQDPTCKLLFVSNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN 660

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLLIF IDQIPEM+RGKGVRLQSYKDGG+SDV+CF I EGLTW+DSAGRS+N
Sbjct: 661 VAVVGENRKLLIFPIDQIPEMNRGKGVRLQSYKDGGVSDVVCFNISEGLTWVDSAGRSFN 720

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           RS++DL+ WLGKRGG GSLVPKGFPRSG F S
Sbjct: 721 RSKDDLIRWLGKRGGAGSLVPKGFPRSGNFFS 752


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/750 (60%), Positives = 585/750 (78%), Gaps = 1/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   +   N   +  ++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKRLLPPDNGGGDH-IEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+    F K ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 60  MRLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+
Sbjct: 120 IDGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+
Sbjct: 180 SGIAVGMATSIPPHNAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASIL 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRGGFRVR+RW  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLED
Sbjct: 240 EAYETGRGGFRVRSRWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+R+VL PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+
Sbjct: 300 IRDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+EWL HRR+VL RRS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R
Sbjct: 360 LQEWLDHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+ Q +AILN+RLR+LRKLEE++I+ E D L  EK++I++LL S  +QW+ I  E+ 
Sbjct: 420 WSLTDTQAEAILNMRLRALRKLEEFEIRKEFDGLTTEKKQIEALLASDAKQWSTIKWEVT 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +++ F   T+LG+RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DL
Sbjct: 480 SIRDKFGPETELGKRRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADL 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FKEGDSLK+A HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++Q
Sbjct: 540 STLTFKEGDSLKLAFHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFV+D   KLL+ S   N FIV E E++ANTRKGK  + V + ++ K  V +TGDH
Sbjct: 600 DIVTAFVHDPKRKLLLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           +A+VGENRK+L+F++  IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ 
Sbjct: 660 LAIVGENRKMLVFALSDIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           RS  +L  W+G R   G +VPKGFPR+GKF
Sbjct: 720 RSREELAEWIGARASAGRMVPKGFPRTGKF 749


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/736 (61%), Positives = 584/736 (79%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+    F K
Sbjct: 14  DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+SGIAVGMATSIP H
Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++ +  + KL++++ GPDFPTGGIIV+SR SI+E+Y  GRGGFRVR+
Sbjct: 194 NAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL 
Sbjct: 254 KWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R
Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+NQ +AILN+
Sbjct: 374 RSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDNQAEAILNM 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE++I+ E D L AEK++I++LL S  +QW+ I  E+  +++ F   T+LG+
Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DLS L FKEGDSLK+A
Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++QDIVTAFV+D   KL
Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S   N FIV E E++ANTRKGK  + V + ++ K  V + GDH+A+VGENRK+L+F+
Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIGDHLAIVGENRKMLVFA 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ RS  +L  W+G R 
Sbjct: 674 LSEIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G +VPKGFPR+GKF
Sbjct: 734 SAGRMVPKGFPRTGKF 749


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/750 (60%), Positives = 588/750 (78%), Gaps = 1/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   +   N   +  ++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKRLLPPENGGGDH-IEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+    F K ARIVGEV+GK HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 60  MRLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT VA  +L G+ EDAVD+R TYNEED EPVV P  FPNLLANG+
Sbjct: 120 IDGDNAAAMRYTEARMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI+N +  + KL++++ GPDFPTGGIIV+SR SI+
Sbjct: 180 SGIAVGMATSIPPHNAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASIL 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRGGFRVR++W  E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLED
Sbjct: 240 EAYETGRGGFRVRSKWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVR+VL PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+
Sbjct: 300 IRDESAEDVRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+EWL HRR+VL RRS  R+  I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R
Sbjct: 360 LQEWLEHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+ Q +AILN+RLR+LRKLEE++I+ E D L AEK++I++LL S ++QW  I  E+ 
Sbjct: 420 WSLTDTQAEAILNMRLRALRKLEEFEIRKEFDGLSAEKKQIEALLASNEKQWATIKWEVT 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +++ F   T+LG+RRT F +    D   +  AMIE+EP+TVV+S +GW+R++K H  DL
Sbjct: 480 NIRDKFGPETELGKRRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADL 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FKEGDSLK+A HA TTD++L+ +T GK YT+ A  L  GRGHGE I++++D++++Q
Sbjct: 540 STLTFKEGDSLKLAFHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DIVTAFV+D+  KLL+ S   N FIV E E++ANTRKGK  + V + ++ K  + VTGDH
Sbjct: 600 DIVTAFVHDAKRKLLLASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           +A+VGENRK+L+F++ +IPEM RGKGVRLQ YKDGG+ D+  F +  GL+W DSA R++ 
Sbjct: 660 LAIVGENRKMLVFALAEIPEMGRGKGVRLQKYKDGGLLDLKPFTLESGLSWQDSADRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           RS  +L  W+G R   G +VPKGFPR+GKF
Sbjct: 720 RSREELAEWIGARASAGRMVPKGFPRTGKF 749


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/752 (64%), Positives = 623/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII+++RESI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+R+VL PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI 
Sbjct: 420 WDLTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEALLSSDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D 
Sbjct: 480 EVKKKFAKATEVGRRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +AL FKEGD LKIA  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 AALTFKEGDGLKIAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D + K L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPSRKQLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +S+++L+ WL  R   G  VPKGFPRSGKF  
Sbjct: 720 KSKDELVEWLADRATAGRTVPKGFPRSGKFAG 751


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/745 (66%), Positives = 611/745 (82%), Gaps = 8/745 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +E LL          I GPDFPTGG+IVESR S++ESYR 
Sbjct: 192 HNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D ++L F
Sbjct: 492 FAKATELGKRRSTFADAPEADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTTSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK++  A TTD+IL+ +T GK YTL +  L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDALKVSFPAQTTDKILIFTTGGKVYTLGSDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + VS  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGGISD+ CF I EGLTW DSAGR + +++++
Sbjct: 672 ENRKMLVFPLAQVPEMARGKGVRLQRYKDGGISDIRCFSIAEGLTWEDSAGRVFTKTKDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           LL W+G R G G +VPKGFPRSGKF
Sbjct: 732 LLEWMGDRAGAGRVVPKGFPRSGKF 756


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 610/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ W+G R G G +VPKGFPRSGKF  
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKFSG 758


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 610/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 12  DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 72  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+ ++E LL          I GPDFPTGG+IVESR S+ ESYR 
Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIVESRASMAESYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+
Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D+L  EK +I++LL SG +QW  +A EI EVK+ 
Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D S+L F
Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++  A TTD+IL+ +T GKAYTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V+  ++ KLVV V GDH+AVVG
Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+  F I EGLTW DSAGR + ++ ++
Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ W+G R G G +VPKGFPRSGKF  
Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKFSG 758


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/747 (65%), Positives = 608/747 (81%), Gaps = 8/747 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMGL   ++FK
Sbjct: 7   DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE
Sbjct: 67  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P  FPNLLANG SGIAVGMATSIP 
Sbjct: 127 AKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245
           HN  E+C+AAL LI +P+  +E LL          I GPDFPTGGIIVESR S++ESYR 
Sbjct: 187 HNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRT 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES
Sbjct: 247 GRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 306

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL
Sbjct: 307 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           AHRREVL RRS  R+ AIDRR+EIL G L+AYLNIDE+I IIR ED+PK +M+ RF+LT+
Sbjct: 367 AHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAMMIERFALTD 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I++E D L  EK +I++LL S  +QW  +A EI EVK+ 
Sbjct: 427 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+K+T+LG+RR+TF +   AD   +QQAMIEKEPITVVIS +GWIR+LK H  D SAL F
Sbjct: 487 FAKATELGKRRSTFADAPDADIEAIQQAMIEKEPITVVISEKGWIRALKGHISDTSALQF 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD+LK+A  A TTD+IL+ +T GK YTL    L  GRGHGE +++++D+ ++QD++TA
Sbjct: 547 KDGDALKVAFPAQTTDKILVFTTGGKVYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 606

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
            V+D   KL+V S+ GN F+V ES+I+ANTRKGK  + V   ++ KLVV   GDHVAVVG
Sbjct: 607 LVHDPARKLIVSSAAGNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKGDHVAVVG 666

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +NRK+L+F + QIPEM+RGKGVRLQ YKDGGISD+ CF + EGLTW DSAGR + +++++
Sbjct: 667 DNRKMLVFPLAQIPEMARGKGVRLQRYKDGGISDIRCFTMAEGLTWEDSAGRVFTKTKDE 726

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L+ WLG R G G LVPKGFPRSG+F  
Sbjct: 727 LVEWLGDRAGAGRLVPKGFPRSGRFSG 753


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/735 (60%), Positives = 569/735 (77%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V+LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + LD GA FKK 
Sbjct: 6   GIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGFKKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VY++LVRLAQ F QRYPLI GQGNFGNIDGDSAAA RYTEAR
Sbjct: 66  ARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A  +L G+DEDAVDFR+TY+ ED EP+V P  FPNLLANG+SGIAVGMATSIP HN
Sbjct: 126 LTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+CEAA  LI NP      LL++I GPDFPTGG++V+    ++E+Y  GRG FRVRAR
Sbjct: 186 AFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W +E++GRG W +VVTEIPYQVQKSRLIEKIAEL++A+++PLL+DIRDESAEDVRIVL P
Sbjct: 246 WAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIVLVP 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++R++D  LLMES+F L+D+E+RFPLNMNVLS G+VP VM +  +L+EWL HR+ VL RR
Sbjct: 306 RSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVLIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I+ R+E+L G L+AYLN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 366 SQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKAELMRTFGLTDVQAEAILNMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E D L AE++++ +LL S  +QW +I  +I EV + +   T LGRR
Sbjct: 426 LRSLRKLEEMEIRKEHDKLSAERDELKALLGSEARQWTRIGKDIAEVGKAYGPETPLGRR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F E    D   LQQAMIEKEPITVVIS++GWIR+LK H  DLS+L FK+GD LK+A 
Sbjct: 486 RTGFSEAPGHDVEDLQQAMIEKEPITVVISDKGWIRALKGHQQDLSSLAFKQGDKLKLAF 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L++D+   QD+V+AFV+    KLL
Sbjct: 546 HAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVDMEEGQDVVSAFVHKPGRKLL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S +   F+V E++++ANTRKGK  L +++  +  L +   GDHVAV+G+NRKLL+F +
Sbjct: 606 VASDEARGFVVPETDVVANTRKGKQVLNLTAPNEAVLCIAAEGDHVAVIGQNRKLLVFPL 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM RG+GVRLQ Y+DG ++D + F   +GLTWIDS+GRS+NRS +DL  W G RG 
Sbjct: 666 AQVPEMGRGRGVRLQRYRDGHLADAVVFDGAQGLTWIDSSGRSFNRSLDDLADWRGDRGQ 725

Query: 736 VGSLVPKGFPRSGKF 750
            G L P GFPRS +F
Sbjct: 726 AGRLPPTGFPRSNRF 740


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/752 (60%), Positives = 590/752 (78%), Gaps = 5/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + +   N    ++   V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+H 
Sbjct: 1   MGKEVLPPGNG---DSASPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+    F K ARIVG+V+GK HPHGDQS+YD+LVRLAQPF  RYPL+ GQGNFGN
Sbjct: 58  MRLLRLNPEQGFAKCARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA  +L G+ EDAVDFR TYNEED EP+V P  FPNLL NG+
Sbjct: 118 IDGDNAAAMRYTEARMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATS+P HN  E+C+AALALID+P++ + +LL+++ GPDFPTGGIIVE R SI 
Sbjct: 178 SGIAVGMATSVPPHNAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRGGFR+RARW  E+ GRG+W +VVTEIPY VQKSRLIEKIAELI+A+++PLLED
Sbjct: 238 EAYETGRGGFRLRARWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLED 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAED+R+VL PK+R+++P+LLMES+F L+D+ETRFPLNMNVLS G+VP V+ L  +
Sbjct: 298 VRDESAEDIRVVLVPKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDV 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+EWL HRREVL RRS  R+  I++R+EIL G L+AYLNIDE+I IIR ED+PKPVM+ R
Sbjct: 358 LREWLDHRREVLVRRSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPVMMER 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+LT+NQ +AILN+RLR+LRKLEE++I++E D L  EK +I++LL S  +QW  +  E+ 
Sbjct: 418 FNLTDNQAEAILNMRLRALRKLEEFEIRTEFDKLSEEKTQIEALLASEAKQWKTVRWEVA 477

Query: 481 EVKEIFSKSTD--LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +V++ F    +  LGRRRTTF +    D   +QQAMIE+EPITV++S +GW+R++K H  
Sbjct: 478 KVRQTFDPEKNPALGRRRTTFGDAPSHDLEDVQQAMIEREPITVILSEKGWLRAMKGHLT 537

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           DLS + FKEGDSLK++ HA TTD+ILL +T GK YT+    L  GRGHGE +++++D+ +
Sbjct: 538 DLSTVVFKEGDSLKLSFHAQTTDKILLFTTGGKFYTIGGDRLPGGRGHGEPVRIMVDMEN 597

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +Q +VTAF +D   +LL+ S  GN FIV E E++ANTRKGK  + V + ++ +L + V+G
Sbjct: 598 DQAVVTAFAHDPERRLLIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDEARLCIPVSG 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           DH A+VGENRKLL+F ++Q+PEM RGKGVRLQ YKDGGI+D+  F I +GLTW DSA R+
Sbjct: 658 DHAAIVGENRKLLVFPLEQVPEMVRGKGVRLQRYKDGGIADLKTFAIADGLTWQDSADRT 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + RS+++L  W+G R   G + PKGFPR+GKF
Sbjct: 718 FTRSKDELAEWIGDRAAAGRMAPKGFPRTGKF 749


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/752 (64%), Positives = 621/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   +++++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+R+VL PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL+S  +QW  +A EI 
Sbjct: 420 WDLTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIETLLSSDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F +    D+  +QQAMIEKEPITVVIS +GWIR+LK H  D 
Sbjct: 480 EVKKKFAKATEIGRRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L FKEGD LKIA  A TTD+IL+L+T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 ATLTFKEGDGLKIAFPAQTTDKILILTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D + K L+VS+ GN F+V E+E++ANTRKGK  + V   E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPSRKQLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +++++L  WL  R   G  VPKGFPRSGKF  
Sbjct: 720 KNKDELAEWLADRATAGRTVPKGFPRSGKFAG 751


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/752 (64%), Positives = 623/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AID+R+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI 
Sbjct: 420 WDLTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D 
Sbjct: 480 EVKKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L FKEGD LK+A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 ATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D   K L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPARKQLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 720 KNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 751


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/752 (64%), Positives = 623/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI 
Sbjct: 420 WDLTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D 
Sbjct: 480 EVKKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L FKEGD LK+A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 ATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D   K L+VS+ GN F+V E+E+IANTRKGK  + V+  E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPARKQLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 720 KNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 751


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/752 (64%), Positives = 624/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + I++TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRIVLVPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+NQV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI 
Sbjct: 420 WDLTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKSEIEALLASDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F E   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  + 
Sbjct: 480 EVKKKFAKATEVGRRRTQFAEAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHISET 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L FKEGD LK+A  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 ATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D T K L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPTRKQLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLFWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 720 KNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 751


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/736 (63%), Positives = 603/736 (81%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AMS+MGL  G +FKK
Sbjct: 12  DDIQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSDMGLRSGGSFKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVGEV+G  HPHGDQS+YD+LVRLAQ F  RYPL++GQGNFGNIDGD+AAA RYTE+
Sbjct: 72  CAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNIDGDNAAAMRYTES 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT VAEL+++G+ EDAVDFR TY+EE+SEP V P  FPNLLANG +GIAVGMATSIP H
Sbjct: 132 KMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGATGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI  P+ ++E LLE++ GPDFPTGGI++ESRE+++E+Y+ GRGGFRVRA
Sbjct: 192 NAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLEAYKTGRGGFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG + IV+TE+PYQVQKSRLIEKIAEL+IA+R+PLL+D+RDESAEDVR+VL 
Sbjct: 252 KWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDVRDESAEDVRLVLI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+RS+DP LLMES+F L+D+E+R PLN+NVLSMGRVP+VM L  +L EWLAHRREVL R
Sbjct: 312 PKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVLSEWLAHRREVLQR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+ AI+RR+E+L G LIAYLN+DE+I IIR ED+PK  ++  F L++ Q +AILN+
Sbjct: 372 RSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPKLELMKTFELSDVQAEAILNM 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE +I+ E D L AEK +I+SLL S  +QW  +A E+  V++ FSK T+LG 
Sbjct: 432 RLRSLRKLEELEIRKEFDALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGA 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F E   AD A ++QAMIEKEPITVVIS +GWIR +K H  D ++L FK+GD LK+A
Sbjct: 492 RRTNFAEAPVADLAAIEQAMIEKEPITVVISEKGWIRGMKGHLPDFASLQFKDGDGLKLA 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
            HA+TTD++++++T GKAYTL A  L  GRGHGE +++++D++++Q ++TAFV+DS  KL
Sbjct: 552 FHANTTDKLVIVTTGGKAYTLGADKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDSARKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S+ GN FIV ES+++ANTRKGK  + V   ++ +L V V+GDHVAV+GENRK+LIF+
Sbjct: 612 LMASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSGDHVAVIGENRKMLIFA 671

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+PEMSRGKGVRLQ YKDGGI+D+ CF + +GLTW DSAGR++NR++ +L  W+  R 
Sbjct: 672 LSQLPEMSRGKGVRLQRYKDGGIADIRCFAMADGLTWEDSAGRAHNRTQAELTEWIADRA 731

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFPRSGKF
Sbjct: 732 QAGRLVPKGFPRSGKF 747


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/746 (65%), Positives = 603/746 (80%), Gaps = 8/746 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +NV  + L++ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHAMSEMG+   +AFKK
Sbjct: 13  DNVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGDSAAAYRYTEA
Sbjct: 73  CARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDSAAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA L+L+G+++DAVDFR TYNEED EPVV P  FPNLLANG SGIAVGMATSIP H
Sbjct: 133 RMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGASGIAVGMATSIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLE--------YIIGPDFPTGGIIVESRESIVESYRLG 246
           N  E+C+AAL LI N   S+E+L           I GPDFPTGGI++ESRES++E+YR G
Sbjct: 193 NAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVIESRESMLETYRTG 252

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RGGFRVRA+W  E++GRG + IV+T+IP+QVQKSRLIEKIAEL+IAKR+PLLEDIRDESA
Sbjct: 253 RGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAKRLPLLEDIRDESA 312

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           EDVR+VL PK+R++DP +LMES+F LS++E+R PLNMNVLS G+VP+VM L+ +L EWL 
Sbjct: 313 EDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPKVMALNEVLLEWLD 372

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           HR++VL RRS FR+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+ K  +++RF LT+N
Sbjct: 373 HRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEAKDALIARFELTDN 432

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S   QW  IA EI EVK+ +
Sbjct: 433 QAEAILNMRLRNLRKLEEFEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKY 492

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +K+TD+GRRRT F     AD   +QQAMIEKEPITVVIS +GWIR+LK HS D  +L FK
Sbjct: 493 AKATDIGRRRTLFANAPDADVDAIQQAMIEKEPITVVISEKGWIRALKGHSYDKVSLTFK 552

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD L++A  A TTD+ILL++T GK YTL    L  GRGHGE I++++D+ ++QD++TAF
Sbjct: 553 EGDGLRVAFPAQTTDKILLVTTGGKVYTLGGDKLPGGRGHGEPIRIMVDMENDQDVLTAF 612

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           V+D   KLL+ S+ GN FIV ES+I ANTRKGK  + V   ++ KLVV ++GDHVAVVGE
Sbjct: 613 VHDPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISGDHVAVVGE 672

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           NRK+++F + Q+PEMSRGKGVRLQ YKDGG+SD+ CF + +GL+W DSAGRS+ RS+++L
Sbjct: 673 NRKMVVFPLAQVPEMSRGKGVRLQRYKDGGVSDIKCFTLADGLSWEDSAGRSFTRSKDEL 732

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L WLG R G G  VPKGFPRSGKF  
Sbjct: 733 LEWLGDRAGPGRTVPKGFPRSGKFSG 758


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/752 (64%), Positives = 618/752 (82%), Gaps = 1/752 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I   +   ++ ++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGQE-ILPPSGGDDDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   +AF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MNEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP V P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESYR GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 240 ESYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+R+VL PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +
Sbjct: 300 IRDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEV 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKEWL HRREVL RRS FR+ AIDRR+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R
Sbjct: 360 LKEWLDHRREVLQRRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMAR 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LT+ QV+AILN+RLR+LRKLEE++I+ E D L  EK +I++LL S  +QW  +A EI 
Sbjct: 420 WDLTDIQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIG 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ F+K+T++GRRRT F +   AD+  +QQAMIEKEPITVVIS +GWIR+LK H  D 
Sbjct: 480 EVKKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADT 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L FKEGD LKIA  A TTD+IL+++T GKA+TL    L  GRGHGE +++++D++++Q
Sbjct: 540 ATLTFKEGDGLKIAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQ 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            ++TAFV+D + K L+VS+ GN F+V E+E++ANTRKGK  + V+  E+ +L+V V+GDH
Sbjct: 600 AVLTAFVHDPSRKQLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKDGGISDV CF I  GL W DSAGR++ 
Sbjct: 660 VAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISGGLVWEDSAGRTFT 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +++++L  WL  R   G  VPKGFPRSGKF  
Sbjct: 720 KNKDELAEWLADRATAGRTVPKGFPRSGKFAG 751


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/750 (66%), Positives = 612/750 (81%), Gaps = 2/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D +  S    ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHA
Sbjct: 1   MGKDLVPPSGG--DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN
Sbjct: 59  MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG 
Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+
Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED
Sbjct: 239 DAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL PKNR++D  LLMES+F LSD+E+R PLNMNVLS+G+VP+VM L+ +
Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLAHR++VL RRS  R+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+PK VM++R
Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMAR 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+NQ +AILN+RLR+LRKLEE++I+ E D+L  EK +I+ LL S  +QW  +A EI 
Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLASDDKQWQTVAWEIG 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ ++K+T++GRRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D 
Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL FKEGD  K+A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++Q
Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+TAFV+D + KLL+VS+ GN FIV ESE+IANTRKGK  + VS  ++ KL V VTGDH
Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDH 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR++ 
Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRAFT 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +   +L  WL  R  VG  VPKGFPRSGKF
Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/745 (58%), Positives = 573/745 (76%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +++++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MGKETTPPPSGIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+
Sbjct: 61  LDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT  A+ +L G+DE+AVDFR+TY+ ED EP+V P  FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+CEA   LI NP     +LLEYI GPDFPTGG++V  + SI E+Y  
Sbjct: 181 GMATSIPPHNAFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRARW VE++GRG W IVVTEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDES
Sbjct: 241 GRGSFRVRARWEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIVL P++R++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM L  +L+EWL
Sbjct: 301 AEDIRIVLVPRSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+EVL RRS +R+  I+ R+E+L+G L+AYLN+DE+I IIR ED+PK  ++  F L++
Sbjct: 361 DHRKEVLIRRSEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKAELMQTFELSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I+ E D L AEK+ +  LL S  +QW +I+ EI ++ ++
Sbjct: 421 VQAEAILNMRLRSLRKLEEMEIRKEHDKLSAEKDDLTKLLGSDARQWTKISKEIADISKV 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +   T++G+RRT   E    D   +QQAMIEKEPITV+IS +GWIR++K H  DLS + F
Sbjct: 481 YGPETEIGKRRTDKSEAPETDLIDIQQAMIEKEPITVIISEKGWIRAMKGHQTDLSGVVF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++LHA TTD+ILL ST GK +TL A  L  GRGHGE I+L+++++  QD+V A
Sbjct: 541 KQGDKLKLSLHAETTDKILLFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVNA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+     LL+ +++   F+V E +++ANTRKGK  L +S+  +  + V+ +GDHVA++G
Sbjct: 601 FVHKPGRNLLLATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F + QIP+M RG+GVRLQ Y+DG ISD+  FK  +GLTW DS+GRS+ RS ++
Sbjct: 661 ENRKLLVFPLVQIPQMGRGRGVRLQRYRDGNISDIRVFKGEDGLTWTDSSGRSFTRSLDE 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  W G+RG  G L P GFPRS KF
Sbjct: 721 LADWRGERGQAGRLPPTGFPRSNKF 745


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/741 (63%), Positives = 599/741 (80%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G +
Sbjct: 9   FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQS 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RY
Sbjct: 69  YAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSI
Sbjct: 129 TEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV E+C+AAL LI +P+++ E+L ++++GPDFPTGGI+VE ++SI ESYR+GRG FR
Sbjct: 189 PPHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESYRVGRGFFR 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  E   RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI+DESAED+RI
Sbjct: 249 LRSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRI 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++WL HR+EV
Sbjct: 309 VLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLEHRQEV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  ++SRF LTENQ +AI
Sbjct: 369 LIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKQLISRFELTENQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE++I+ E ++L AEKEK+ +LL S  +QW  I+ EI++V+  F   T 
Sbjct: 429 LNMRLRSLRKLEEFEIRKEFESLKAEKEKLQNLLASPIKQWKIISEEIKKVRNTFGPETP 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG+RRTTF E  R D   +QQAMIEKEPIT+VIS +GW+R+LK H  D  AL FKEGDSL
Sbjct: 489 LGKRRTTFEEAPRHDLDDIQQAMIEKEPITIVISEKGWMRALKGHLNDYKALSFKEGDSL 548

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A  A TTD+I+L+ST GK + + A +L  GRGHGE I+LL+D++   D++TAFV+ + 
Sbjct: 549 KLAFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAE 608

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLL+VSS GN FIV  +E+IANTRKGK  + V + +K+KL V+V GDHVAVVGENRK+L
Sbjct: 609 EKLLLVSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNGDHVAVVGENRKML 668

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IFSI+QIPEM+RGKGVRLQ YK+GG+ D   F + EGL+W D+A R +NR  +DL  W+G
Sbjct: 669 IFSIEQIPEMNRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERIFNRQADDLFEWMG 728

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            R GVG LVP+GFP+SGKF++
Sbjct: 729 MRAGVGRLVPRGFPKSGKFIN 749


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/739 (63%), Positives = 593/739 (80%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G +
Sbjct: 9   FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQS 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RY
Sbjct: 69  YAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSI
Sbjct: 129 TEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV E+C+AAL LI +P+   E L ++++GPDFPTGGI+VE +ESI ESYR+GRG FR
Sbjct: 189 PPHNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEESYRIGRGFFR 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  E   RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI+DESAED+RI
Sbjct: 249 LRSRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRI 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PKNRS+DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L   L++WL HR+EV
Sbjct: 309 VLVPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLVHRQEV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS +R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++RF LTENQ +AI
Sbjct: 369 LIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKRKLINRFELTENQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE++I+ E + L AEKEK+ +LL S  +QW  ++ EI++V+  F   T 
Sbjct: 429 LNMRLRSLRKLEEFEIRKEFETLKAEKEKLQNLLASPIKQWKIVSEEIKKVRNTFGPETL 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG+RRTTF E  R D   +QQAMIEKEP+TVVIS +GW+R+LK H  D  AL FKEGDSL
Sbjct: 489 LGKRRTTFEEAPRHDLDDIQQAMIEKEPVTVVISEKGWMRALKGHLNDYKALSFKEGDSL 548

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A  A TTD+I+L+ST GK + L A +L  GRGHGE I+LL+D++   D++TAFV+ + 
Sbjct: 549 KLAFPAFTTDKIVLISTGGKFFALGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAE 608

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLL+VSS+GN FIV  +E+IANTRKGK  + V S +K+KL   V GDHVAVVGENRK+L
Sbjct: 609 EKLLLVSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHGDHVAVVGENRKML 668

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IFSI+QIPEM+RGKGVRLQ YK+GGI D   F + EGL+W D+A R +NR  +DL+ W+G
Sbjct: 669 IFSIEQIPEMNRGKGVRLQRYKEGGIVDAKTFNLSEGLSWQDTAERIFNRQADDLIEWMG 728

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            R GVG +VPKGFP+SGKF
Sbjct: 729 IRAGVGRMVPKGFPKSGKF 747


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/745 (58%), Positives = 569/745 (76%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     ++ ++L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++AM  + 
Sbjct: 1   MGQEVTPPPSGIEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G  FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+
Sbjct: 61  LDPGQGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT  A+ +L G+DEDAVD+R+TY+ ED EP+V P  FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+C A   LI NP+  +++LLE+I GPDFPTGG++V  + SI E+Y  
Sbjct: 181 GMATSIPPHNAFELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIREAYAT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRARW VEE+GRG W IVVTEIPYQVQKSRLIEKIAEL+IA+++PLL+D+RDES
Sbjct: 241 GRGSFRVRARWEVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+R+VL P+++++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM +  +L+EWL
Sbjct: 301 AEDIRVVLVPRSKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVLREWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR+ VL RRS  R+  I+ R+E+L G LIAYLN+DE+I IIR ED  K  ++  F LT+
Sbjct: 361 DHRKVVLVRRSEHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDDAKASLIRTFELTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE++I+ E D L  EK+++  LL S  +QW +I+ EI E+ ++
Sbjct: 421 VQAEAILNMRLRSLRKLEEFEIRKEHDKLTDEKDQLTKLLGSDARQWTKISKEIGEIAKV 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +   T++G+RRT   E   AD   +QQAMIEKEPITV+IS +GWIR+LK H  DLS+L F
Sbjct: 481 YGPETEIGKRRTDKAEAPEADLVDIQQAMIEKEPITVIISEKGWIRALKGHQADLSSLSF 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K+GD LK++ HA TTD+IL+ ST GK +TL A  L  GRGHGE I+L+++++  QD+V+A
Sbjct: 541 KQGDKLKLSFHAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVSA 600

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+     LL+ +++   F+V E +++ANTRKGK  L +++  +  L V  TGDHVA++G
Sbjct: 601 FVHKPGRNLLLSNNEARGFVVSEDDVVANTRKGKQVLNLTAPAEAALCVDATGDHVAIIG 660

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENRKLL+F + QI +M RG+GVRLQ Y+DG +SD+  FK  +GLTW DS+GRS+ RS  +
Sbjct: 661 ENRKLLVFPLAQIAQMGRGRGVRLQRYRDGNVSDIRVFKGEDGLTWTDSSGRSFTRSLEE 720

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  WLG RG  G L P GFPRS KF
Sbjct: 721 LSEWLGDRGQAGRLPPTGFPRSNKF 745


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/750 (58%), Positives = 575/750 (76%), Gaps = 3/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + I        + V+ + LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MGNETIPPQGP---DGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD G+ FKK AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN
Sbjct: 58  MRLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD+AAA RYTEAR+T+ A+ +L G+DE+A+DFR+TY+ ED EP+V P  FPNLLANG+
Sbjct: 118 VDGDNAAAMRYTEARLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+CEA   LI NP+  ++ LL++I GPDFPTGG++V    SI 
Sbjct: 178 SGIAVGMATSIPPHNAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG FRVRA+W VE++GRG WC+V+TEIPYQVQKSRLIEKIAEL+ A+++PLL+D
Sbjct: 238 EAYATGRGSFRVRAKWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES ED+R+VL P++R++D  LLMES+F L+D+E RF LNMNVLS G+VP VM +  +
Sbjct: 298 VRDESTEDIRVVLVPRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQV 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+EWL HR+EVL RRS +R+  I+ R+E+L+G LIAYLN+DE+I IIR ED  K  ++  
Sbjct: 358 LREWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDDAKAELIRT 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSLT+ Q +AILN+RLRSLRKLEE +I+ E D L  EK+++  LL S  +QW +I+ EI 
Sbjct: 418 FSLTDVQAEAILNMRLRSLRKLEELEIRKEHDKLTKEKDELTKLLGSDARQWTRISKEIA 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ + +   T+LG+RRT   E    D   +QQAMIEKEPITV+IS +GWIR+LK H  DL
Sbjct: 478 EISKAYGPETELGKRRTEQAEAPDHDLGDIQQAMIEKEPITVIISEKGWIRALKGHQSDL 537

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FK+GD+LK++ HA TTD+IL+ ST GK +TL A NL  GRGHGE I+L+++++  Q
Sbjct: 538 STLSFKQGDALKLSFHAETTDKILVFSTGGKFFTLSAANLPGGRGHGEPIRLMVEMDEAQ 597

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           D+V AFV+ +  KLL+ S++   F+V E +++ANTRKGK  L +++  +  + V+  GDH
Sbjct: 598 DVVCAFVHKAGRKLLISSNEARGFVVGEDDVVANTRKGKQVLNLTAPAEATICVEADGDH 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAV+G+NRKLL+F + QI +M+RG+GVRLQ Y+DG I+DV  FK  +GLTW+DS+GRS+N
Sbjct: 658 VAVIGQNRKLLVFPMAQIAQMTRGRGVRLQRYRDGDIADVRVFKGEDGLTWVDSSGRSFN 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           RS  DL  W G RG  G L P GFPRS KF
Sbjct: 718 RSLEDLTDWRGDRGQAGRLPPTGFPRSNKF 747


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/750 (65%), Positives = 612/750 (81%), Gaps = 2/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG + +  S    ++N+  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRIIHA
Sbjct: 1   MGKNLVPPSGG--DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN
Sbjct: 59  MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P  FPNLLANG 
Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+
Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRGGFRVRA+W  E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLED
Sbjct: 239 EAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLED 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL PKNR++D  LLMES+F LSD+E+R PLNMNVLS+GRVP+VM L+ +
Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLAHR++VL RRS  R+ AIDRR+EIL GLL+AYLN+DE+I IIR ED+PK VM+++
Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQVMMAK 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +SLT+NQ +AILN+RLR+LRKLEE++I+ E D L +EK +I+ LL S ++QW  +A EI 
Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEFDELSSEKAEIEGLLASDEKQWQTVAWEIG 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVK+ ++K+T++GRRRT F +   AD   +QQAMIEKEP+T+VIS +GWIR+LK H  D 
Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           SAL FKEGD  K+A  A TTD++LLL+T GKAYTL A  L  GRGHGE I++++D+ ++Q
Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           DI+TAFV+D + KLL+VS+ GN FIV ESE++ANTRKGK  + V+  ++ KL V VTGDH
Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTGDH 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR + 
Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRLFT 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +   +L  WL  R  VG  VPKGFPRSGKF
Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 18  MGKSLIPPDDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 75

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 76  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 135

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 136 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 195

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++PE  +E+L+                      
Sbjct: 196 AGIAVGMATNIPPHNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLK 255

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+++YR GRG FRVRARW  EE  RG+W IV+TEIPYQVQ
Sbjct: 256 CKVRGPDFPTGGILVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQ 315

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+D+RDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 316 KSRLIEKIAELLLAKKLPLLDDVRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 375

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL GLLIAYL
Sbjct: 376 VSLNMNVLSHGKVPNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYL 435

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK
Sbjct: 436 NLDEVIRIIREEDEPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEK 495

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+E
Sbjct: 496 TDLEGLLASGTRQWKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIERE 555

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 556 PVTIVVSEKGWLRAMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 615

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 616 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKG 675

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+S
Sbjct: 676 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVS 735

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I EGL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 736 DVRTFAIAEGLSWQDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 787


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/741 (61%), Positives = 592/741 (79%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +E+++ + LRFAL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   +
Sbjct: 9   FDKEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPEQS 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RY
Sbjct: 69  YAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATSI
Sbjct: 129 TEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+C+AAL LI +P+ + EKL ++++GPDFPTGGI+VE ++SI ESYR+GRG FR
Sbjct: 189 PPHNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEESYRIGRGFFR 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  E   RGS+ I+VTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RI
Sbjct: 249 LRSRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRI 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G+VP V+ L   L++WL HR++V
Sbjct: 309 VLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESLQQWLEHRQQV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS++R+  ID R+EIL G LIAYLN+DE+I IIR ED+PK  +++ F LTENQ +AI
Sbjct: 369 LIRRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKELINCFELTENQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSL KLEE++I+ E D L A+KEK+ +LL S  +QW  I+ EIR+V++IF   T 
Sbjct: 429 LNMRLRSLHKLEEFEIRKEFDALKADKEKLQNLLASSTKQWKMISEEIRKVRKIFGPETL 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG+RRTTF E  R     + QAMIEKEP+T+VIS +GW+R+L+ H  D  AL FKEGD L
Sbjct: 489 LGKRRTTFEEAPRHAIDDIHQAMIEKEPVTIVISEKGWMRALRGHLSDYKALSFKEGDCL 548

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A  A TTD+I ++ST GK + + A +L  GRGHGE I++L+D++   DI+TAFV++  
Sbjct: 549 KLAFPAFTTDKITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDDEHDILTAFVHNVE 608

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLL++SS GN FIV  +E+IANTRKGK  + V   +K+KL + V GDH+AV+GENRK+L
Sbjct: 609 EKLLLISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKVKLCIPVKGDHLAVIGENRKML 668

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF+I+QIPEMSRGKGVRLQ YK+GG+ D   F + EGL+W D+A RS+NR  +DL+ W+G
Sbjct: 669 IFAIEQIPEMSRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERSFNRQAHDLIEWMG 728

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            R GVG +VPKGFP+SGKF++
Sbjct: 729 TRAGVGRMVPKGFPKSGKFIN 749


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/753 (63%), Positives = 618/753 (82%), Gaps = 2/753 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG  N+       ++++  V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MGK-NLLPPGGGDDDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL   AAF+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGN
Sbjct: 60  MSEMGLRPNAAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDS AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+
Sbjct: 120 IDGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESI 239
           SGIAVGMATSIPSHN  E+C+AAL LI + + ++E L+E YI GPDFPTGGII++ R SI
Sbjct: 180 SGIAVGMATSIPSHNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           +ESY+ GRGGFRVRA+W +E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLE
Sbjct: 240 IESYKTGRGGFRVRAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLE 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDESAED+R+VL PK+R++D  +LMES+F LS++E+RFPLNMNVLSMGR+P+VM L+ 
Sbjct: 300 DIRDESAEDIRVVLIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNE 359

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +LKEWL HRREVL RRS FR+ AI++R+EIL G LIAYLNIDE+IAIIR ED+PKPVM+ 
Sbjct: 360 VLKEWLDHRREVLQRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPVMME 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF LT+NQV+AILN+RLRSLRKLEE++I+ E D L  EK +I+ LL S ++QW  +A EI
Sbjct: 420 RFGLTDNQVEAILNMRLRSLRKLEEFEIRKEFDGLSKEKSEIEVLLASDEKQWQTVAWEI 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            EVK+ F+K+T++GRRRT F E   AD A LQQAMIEKEPITVV+S +GWIR+LK H  +
Sbjct: 480 GEVKKKFAKATEVGRRRTQFAEAPEADDAALQQAMIEKEPITVVVSEKGWIRALKGHISE 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S L FKEGD+LK+A  A TTD+IL+++T GKAYTL    L  GRGHGE +++++D+ ++
Sbjct: 540 TSTLTFKEGDALKVAFPAQTTDKILIITTGGKAYTLGGDKLPGGRGHGEPLRIMVDMEND 599

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           QD++TAFV+D   K LV S+ GN F+V E+E++ANTRKGK  + +++ ++ KL+V V+GD
Sbjct: 600 QDVLTAFVHDPQRKQLVASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSGD 659

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           HVAVVGENRK+++F + QIPEMSRGKGVRLQ YKDGG+SD+ CF I +GLTW DSAGR++
Sbjct: 660 HVAVVGENRKMVVFPLSQIPEMSRGKGVRLQRYKDGGVSDIKCFAIADGLTWEDSAGRTF 719

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +++++L  WLG R   G  VPKGFPR+G+F  
Sbjct: 720 TKTKDELAEWLGDRSAAGRAVPKGFPRTGRFSG 752


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRSFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKTPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 6   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 64  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 124 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 184 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 243

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 244 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 303

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 304 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 424 NLDEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 483

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 484 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 543

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 544 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 603

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 604 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 663

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 664 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 723

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 724 DVRSFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 6   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 64  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 124 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 184 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 243

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 244 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 303

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 304 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 424 NLDEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 483

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 484 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 543

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 544 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 603

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 604 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 663

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 664 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 723

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 724 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/772 (59%), Positives = 592/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 6   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 64  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 124 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 184 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 243

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 244 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 303

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 304 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 424 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 483

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 484 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 543

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 544 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 603

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 604 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 663

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 664 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 723

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 724 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/742 (60%), Positives = 594/742 (80%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+ + EE+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ 
Sbjct: 2   SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA
Sbjct: 62  AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VAEL+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMA
Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+C+AAL LI + + S E L ++++GPDFPTGGI+VE ++SI E+YR GRG
Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+R+RW  E   R S+ IV+TEIPYQ+QKSRL+EK AEL++A+R+P+LEDI+DESAED
Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAED 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VRIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+ P V+ L   L++WL HR
Sbjct: 302 VRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +EVL RRS+ R+  I+ R+EIL G LIAYLN+D++I IIR ED+PK  +++ F LTENQ 
Sbjct: 362 QEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEPKKELLTHFQLTENQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E +NL AE+EK+ +LL S  +QW  I+ EI++V++ F+ 
Sbjct: 422 EAILNMRLRSLRKLEEFEIRKEFENLKAEEEKLQALLGSNVKQWQMISEEIKKVRKKFAP 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG+RRTTF +  + D   + QAMIEKEP+T+VIS +GW+R+LK H  D  AL FKEG
Sbjct: 482 ETSLGKRRTTFEDSPKRDVDDIYQAMIEKEPVTIVISEKGWMRALKGHLNDYKALSFKEG 541

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  DI+TAFV+
Sbjct: 542 DCLKLAFPAFTTDKIVVVSTGGKFFTIGANTLPGGRGHGEPIRILVDMDNEHDILTAFVH 601

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++  KLL+VSS GN FI+ E+E+IANTRKGK  + V S +K+KL + V GDH+AV+GENR
Sbjct: 602 NAQGKLLLVSSYGNGFIISETEVIANTRKGKQIMNVKSPDKVKLCIPVKGDHIAVIGENR 661

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K+LIF I+QIPE+SRGKGVRLQ YKDG + D   F + EGL+W D+A RS+NR  ++L+ 
Sbjct: 662 KMLIFPIEQIPEISRGKGVRLQRYKDGVVVDAKTFNLSEGLSWQDTAERSFNRQADELIE 721

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W+G R G G L+P+GFP+SGKF
Sbjct: 722 WMGTRAGAGRLLPRGFPKSGKF 743


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/772 (59%), Positives = 591/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YK GG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKGGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/772 (59%), Positives = 591/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLA  F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 419 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 719 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/772 (59%), Positives = 591/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 1   MGKSLIPPDDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 59  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 119 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL +I++P+  +E+L+                      
Sbjct: 179 AGIAVGMATNIPPHNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLK 238

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 239 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQ 298

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 299 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYL
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L  EK
Sbjct: 419 NLDEVIRIIREEDEPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEK 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F   T+LG RRTTF +    D   + QAMIE+E
Sbjct: 479 TDLEGLLASGTRQWKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 539 PVTIVVSEKGWLRAMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D   KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 599 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+++F +  IPEM+RGKGVRLQ YKDGG+S
Sbjct: 659 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVS 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSG+F
Sbjct: 719 DVRTFAIADGLSWQDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGRF 770


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/772 (59%), Positives = 591/772 (76%), Gaps = 24/772 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   I   +   EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HA
Sbjct: 6   MGKSLIPPGDG--EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHA 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 64  MRLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGN 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+
Sbjct: 124 IDGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGS 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE--------------------- 219
           +GIAVGMAT+IP HNV E+C +AL LI++P+  +E+L+                      
Sbjct: 184 AGIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLK 243

Query: 220 -YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             + GPDFPTGGI+VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQ
Sbjct: 244 CKVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQ 303

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           KSRLIEKIAEL++AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R
Sbjct: 304 KSRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++ +EIL G LIAYL
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYL 423

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK
Sbjct: 424 NLDEVIRIIREEDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEK 483

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+E
Sbjct: 484 TDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFTHAPTHDLEDIHQAMIERE 543

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A 
Sbjct: 544 PVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGAN 603

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKG
Sbjct: 604 TLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKG 663

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ 
Sbjct: 664 KQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVC 723

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 724 DVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/739 (62%), Positives = 591/739 (79%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G +
Sbjct: 9   FDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGHS 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RY
Sbjct: 69  YAKCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNIDGDNAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMATSI
Sbjct: 129 TEARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV E+C+AAL LI +P    E+L  +++GPDFPTGGI+VE ++SI ESYR+GRG FR
Sbjct: 189 PPHNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEESYRVGRGFFR 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  E   RGS+ +VVTEIPYQVQKSRLIEK AEL++A+R+P+LEDIRDESAED+RI
Sbjct: 249 LRSRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIRDESAEDIRI 308

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL PKNR++DP++LMES+F L+D E RFPLN+NVLS G+VP V+ L   LK+WL HR+EV
Sbjct: 309 VLIPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESLKQWLEHRQEV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RRS +++  I+RR+EIL G LI YLN+DE+I IIR ED+PK  ++ RF LTENQ +AI
Sbjct: 369 LIRRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPKKKLIDRFELTENQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSLRKLEE++I+ E + L AEKEK+ +LL+S  +QW  I+ EI +V+++F   T 
Sbjct: 429 LNMRLRSLRKLEEFEIRKEFETLRAEKEKLQNLLDSRTKQWKIISEEIIKVRKVFGPHTL 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG+RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D +AL FKEGD L
Sbjct: 489 LGKRRTTFEEAPRHDFDDIYQAMIEKEPVTIVISEKGWMRALKGHLSDYNALSFKEGDCL 548

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K+A  A TTD+I+++ST GK + + A +L  GRGHGE I++L+D++   D++TAFV+ + 
Sbjct: 549 KLAFPAFTTDKIVVISTGGKFFAIAANSLPGGRGHGEPIRILVDMDDEHDLLTAFVHHTQ 608

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLL+VSS GN FIV  +E+IANTRKGK  + V   +K+KL V V GDHVAVVGENRK+L
Sbjct: 609 EKLLLVSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKGDHVAVVGENRKML 668

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF+I+QIPEMSRGKGVRLQ YK GG+ DV  F + EGL+W D+A R +NR  +DL+ W+G
Sbjct: 669 IFAIEQIPEMSRGKGVRLQRYKQGGVVDVKTFNLSEGLSWQDTAERCFNRQASDLIEWMG 728

Query: 732 KRGGVGSLVPKGFPRSGKF 750
            R GVG +VPKGFP+SGKF
Sbjct: 729 VRSGVGRVVPKGFPKSGKF 747


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/742 (61%), Positives = 588/742 (79%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +  +E+++++ LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G 
Sbjct: 8   SFDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQ 67

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA R
Sbjct: 68  PYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+VA L+L+G++E+A+DFR TYNEED EPVV P  FPNLLANG+SGIAVGMATS
Sbjct: 128 YTEARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSSGIAVGMATS 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+C+AAL LI NP    E L ++++GPDFPTGGI+VE ++SI +SYR GRG F
Sbjct: 188 IPPHNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLF 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R+RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+R
Sbjct: 248 RLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIR 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP ++ L   L++WL HR+E
Sbjct: 308 IVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESLQQWLQHRKE 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS +R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++ RF LTENQ ++
Sbjct: 368 VLIRRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEPKKELILRFKLTENQAES 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE+QI+ E ++L  EKEK+ +LL S  +QW  IA EI  V++IF   T
Sbjct: 428 ILNMRLRSLRKLEEFQIRKEFESLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPET 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTTF E  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD 
Sbjct: 488 FLGKRRTTFEEAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDC 547

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+++  +I+TAFV+++
Sbjct: 548 LKLAFSAFTTDKIIVISTGGKFFTISANILPGGRGHGEPIRILVDMDNEHNILTAFVHNT 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L++SS GN FIV ES+IIANTRKGK  + V S + +KL + V GD++A+VGENRK+
Sbjct: 608 QRKRLLISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLCIPVEGDYIAIVGENRKM 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIFSI+QIPEMSRGKGVRLQ YKD  + DV  F + EGL+W D+A RS+NR  ++L+ W+
Sbjct: 668 LIFSIEQIPEMSRGKGVRLQRYKDSVVVDVKTFTLSEGLSWQDTAERSFNRRADELVEWM 727

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
           G R G G LVPKGFP+SGKF  
Sbjct: 728 GTRAGAGRLVPKGFPKSGKFSG 749


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/742 (62%), Positives = 592/742 (79%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+ G 
Sbjct: 8   SFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLRLNPGQ 67

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA R
Sbjct: 68  AYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMATS
Sbjct: 128 YTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATS 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG F
Sbjct: 188 IPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLF 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R+RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+R
Sbjct: 248 RLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIR 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+E
Sbjct: 308 IVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKE 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF LTENQ ++
Sbjct: 368 VLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAES 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE+Q++ E D+L  EKEK+ SLLNS  +QW  IA EI  V++IF   T
Sbjct: 428 ILNMRLRSLRKLEEFQLRKEFDSLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPET 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD 
Sbjct: 488 FLGKRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDG 547

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+TAFV++ 
Sbjct: 548 LKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNV 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+VGENRK+
Sbjct: 608 QGKRLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKM 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIFSI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  N+L+ W+
Sbjct: 668 LIFSIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWM 727

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
           G R G G LVPKGFP+SGKF S
Sbjct: 728 GTRAGTGRLVPKGFPKSGKFSS 749


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/746 (56%), Positives = 552/746 (73%), Gaps = 4/746 (0%)

Query: 6   ISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +       ++  ++ + L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  +
Sbjct: 1   MGEPPIPTDDGTIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            LD G  F+KSA+IVG+V+G  HPHG+ ++YD++VRLAQ F QRYPL+ GQGNFGNIDGD
Sbjct: 61  RLDPGGGFRKSAKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTEAR+T+VA LIL G+DEDAVDFR  Y+    EPVV P  FPNLLANG++GIA
Sbjct: 121 NAAAERYTEARLTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGSTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN  E+ +A+L LIDNP+ + + LL+++ GPDFPTGG+++ES  SI ++Y 
Sbjct: 181 VGMATSIPPHNAAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIADAYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGGFR+RARW  EE GRG++ +VVTEIPY V KSRL+EKIA+L+  K++PLL D+RDE
Sbjct: 241 TGRGGFRLRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADVRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAEDVR+VL P+ R++D +L+MES+F L+++ETRFPLNMNVL  G+VP+V+ L   L+EW
Sbjct: 301 SAEDVRLVLEPRARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEALREW 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           + HRREVL RRS  R++ I+ R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT
Sbjct: 361 VDHRREVLLRRSRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELT 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILN+RLRSLRKLEE++I+ E D L  EK+ I+ LL S  +QW  +A E+ E ++
Sbjct: 421 DVQAEAILNMRLRSLRKLEEFEIRKEHDALSKEKDGIEKLLGSEARQWKTVAWELGETRK 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           IF   T LGRRRT F E +  D   + +A++E+EPITVV+S +GWIR+LK H  DLSAL 
Sbjct: 481 IFGPDTPLGRRRTGFGEAAAHDADAVSEALVEREPITVVVSEKGWIRALKGHVADLSALA 540

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK  D L+I+    TT ++L+ +T+G+ YTL A  L  GRGHGE ++L I+L    DIV 
Sbjct: 541 FKGDDELRISFFTETTAKLLVFATNGRFYTLDASKLPGGRGHGEPLRLSIELEQEADIVD 600

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
              Y    KLLV + +G  F+V E E +ANTRKGK  L V  ++ +K V+   GD VAV+
Sbjct: 601 VLPYQGGRKLLVAAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVK-VIPAIGDSVAVI 659

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F + QIPEM+RG+GVRLQ YKDG +SDV  F   +GLTW D++GR++  +  
Sbjct: 660 GENRKLLVFPLSQIPEMTRGRGVRLQRYKDGQMSDVKVFSAADGLTWTDTSGRTWTVT-- 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  W G+R   G L PKGFPR+ +F
Sbjct: 718 DLTEWRGERAAAGRLPPKGFPRNNRF 743


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/742 (62%), Positives = 592/742 (79%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ G 
Sbjct: 8   SFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGQ 67

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA R
Sbjct: 68  AYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMATS
Sbjct: 128 YTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATS 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG F
Sbjct: 188 IPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLF 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R+RW  EE  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+R
Sbjct: 248 RLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIR 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+E
Sbjct: 308 IVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKE 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS++R+  ID R+EIL+G LIAYLN++E+I IIR  D+PK  ++ RF LTENQ ++
Sbjct: 368 VLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAES 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE+Q++ E D+L  EKEK+ +LLNS  +QW  IA EI  V++IF   T
Sbjct: 428 ILNMRLRSLRKLEEFQLRKEFDSLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPET 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTTF +  R D+  + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD 
Sbjct: 488 FLGKRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDG 547

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D+N+  DI+TAFV++ 
Sbjct: 548 LKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNV 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L++SS GN FIV E++IIANTRKGK  + V S + +KL + V GD++A+VGENRK+
Sbjct: 608 QGKRLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKM 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIFSI+QIPEMSRGKGVRLQ YKDGGI D   F + EGL+W D+A RS+NR  N+L+ W+
Sbjct: 668 LIFSIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWM 727

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
           G R G G LVPKGFP+SGKF S
Sbjct: 728 GTRAGTGRLVPKGFPKSGKFFS 749


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/742 (61%), Positives = 591/742 (79%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S    +E ++ V L  AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ 
Sbjct: 6   SQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 66  GQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+VA L+L+G++ED++DFR TYNEED EPVV P  FPNLLANG+SGIAVGMA
Sbjct: 126 MRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+C+AAL LI +P  + E L ++++GPDFPTGGI+VE ++SI ESYR GRG
Sbjct: 186 TSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYRTGRG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+R+RW  E+  RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED
Sbjct: 246 LFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAED 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL PKNR++D +LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR
Sbjct: 306 IRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLEHR 365

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +EVL RRSS+R+  I+RR+EIL G LIAYLN+D++I I+R ED+PK  ++  F LT+NQ 
Sbjct: 366 KEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEPKKELIEHFKLTDNQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E ++L  E+ ++ +LL S  +QW  I+ EI +V++IF  
Sbjct: 426 EAILNMRLRSLRKLEEFEIRKEFESLKTEEAQLQALLASNIKQWKMISDEITKVRKIFGP 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG+RRTTF +  + D   +QQAMIE+EP+T++IS +GW+R+LK H  D   L FKEG
Sbjct: 486 ETILGKRRTTFEDAPKHDVNDIQQAMIEREPVTIIISEKGWMRALKGHLNDYKMLSFKEG 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+AL A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+TAFV+
Sbjct: 546 DCLKLALPAFTTDKIVVVSTGGKFFTIGANVLPGGRGHGEPIRILVDMDGEHDILTAFVH 605

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++  K L+VS+ GN FIV E+E+IANTRKGK  + V S +K+KL V V GD+VAVVGENR
Sbjct: 606 NAQEKRLLVSAYGNGFIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNGDYVAVVGENR 665

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KLLIF+I+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  ++L+ 
Sbjct: 666 KLLIFAIEQIPEMSRGKGVRLQRYKDGGVVDAKTFNLSEGLSWQDTAERSFNRQSDELIE 725

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W+G R GVG LVPKGFP+SGKF
Sbjct: 726 WMGTRAGVGRLVPKGFPKSGKF 747


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/737 (56%), Positives = 545/737 (73%), Gaps = 2/737 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V+L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ LD G  FK
Sbjct: 10  DGHIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRLDPGQGFK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTE
Sbjct: 70  KSARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T+ A L+L G+DEDAVDFR TY+  + EP V P+ FPNLLANG+ GIAVGMATSIP 
Sbjct: 130 ARLTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVGMATSIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +AAL LID+PE     LL+++ GPDFPTGG++VE    + E+Y  GRG FRVR
Sbjct: 190 HNAAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAEAYATGRGSFRVR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESAED+R+VL
Sbjct: 250 ARWEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVL 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P+ R++D ++LMES+F L+++E R PLNMNVL  G+VP+V+ L   L+EWL HRR+VL 
Sbjct: 310 EPRARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEALREWLDHRRDVLL 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS +R++ I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ Q +AILN
Sbjct: 370 RRSRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKQELMRTFELTDVQTEAILN 429

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLR+LEE +I+ E D L  E++ ++ L+ S   QW  IA EIRE ++ +   T +G
Sbjct: 430 MRLRSLRRLEEMEIRKEHDALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTYGPETAIG 489

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRRTTF       +    +A++E+EP+T+V+S +GWIR+LK H  DLS L FK  DSL  
Sbjct: 490 RRRTTFAAPPTFHEDAFTEALVEREPVTIVVSAKGWIRALKGHVQDLSNLQFKGDDSLGH 549

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TT ++++ +++G+ YTL A  L  GRGHGE ++L+IDL    +IV+ F Y    K
Sbjct: 550 AFFAETTSKVMVFASNGRFYTLEAAKLPGGRGHGEPVRLMIDLEQEAEIVSVFAYQPGRK 609

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ S +G  F+V E + +ANTRKGK  L     +    V  V GD VAV+G+NRKLL+F
Sbjct: 610 LLLASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFVEGDWVAVIGDNRKLLLF 669

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            ++Q+PEM+RG+GVR Q Y++GG+SD+  F +  GLTW D++GR++  +E  LL W G+R
Sbjct: 670 PLNQVPEMTRGRGVRFQRYREGGLSDLKAFSMASGLTWEDTSGRTWTVTE--LLEWQGER 727

Query: 734 GGVGSLVPKGFPRSGKF 750
              G L PKGFPRS KF
Sbjct: 728 ASAGRLPPKGFPRSNKF 744


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/741 (58%), Positives = 565/741 (76%), Gaps = 5/741 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+  A F K A
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPL+ GQGNFGN+DGD+ AA RYTEARM
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+G+ EDAVDFR TYNEED EP+V P+ FPNLLANG++GIAVGMAT+IP HNV
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C+AAL LI  P    +KL+E++ GPDFPTGGIIVES  S++E+Y+ G+GGFR+RARW
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E++GRG W IVVTEIPYQV KS+LIEK AEL++AK++PLL+DI DESAED+R+VL PK
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP LLME +F L+D+ETRFPLNMNVL  G+VP+VM +  +L+ WL HR+ VL RR+
Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I++R+E+L G +IAYLNIDE+I IIR ED PK  +++RF LT+ Q +A+LNLRL
Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQALIARFELTDAQAEAVLNLRL 444

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R+L KLEE +++ E  +L  EK  I+ LL S + QW  IA E+ + K+ FSK+TDLG RR
Sbjct: 445 RALHKLEEMELRKEFSDLKEEKASIEGLLASDELQWKTIAWEVGQTKKKFSKATDLGARR 504

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           TTF      D   +  AMIEKEP+T+V+S +GWIR+LK H+ D +AL FKEGD L  A H
Sbjct: 505 TTFETAMEVDLDAVAAAMIEKEPVTIVVSQKGWIRALKGHAPDFAALTFKEGDKLLTAFH 564

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+ +T GK YTL A  L  GRGHGE +++++D++++ DI++ F++    K ++
Sbjct: 565 AETTDKLLMFTTAGKFYTLAADKLPGGRGHGEPVRIMVDMDNDADILSLFIHKPGRKRML 624

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLL 671
           VSS GN F+V E+++IANTRKGK  L V+   + KL          GDHVAVVGENRKLL
Sbjct: 625 VSSLGNGFVVAETDLIANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLL 684

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF +DQ+PEM RGKGVRLQ YKDGG+ D   FK+ +GL+W DSAGR++ R+ ++L  ++ 
Sbjct: 685 IFPLDQVPEMGRGKGVRLQRYKDGGVKDARLFKLADGLSWTDSAGRTHTRTADELKEYIA 744

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            R   G +VPKGFP+SG F  
Sbjct: 745 DRAQAGRMVPKGFPKSGTFAG 765


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/740 (57%), Positives = 555/740 (75%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++  + ++L+ ALEERYL+YAL+TI  RA+PD+RDG KPVHRRI++ M  + LD    FK
Sbjct: 8   QDGPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGMRLLKLDPNQGFK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYP++ GQGNFGNIDGDSAAA RYTE
Sbjct: 68  KCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT VA  IL G++E+AVDFR+TY+  DSEPVV P  FPNLLANG++GIAVGMATSIP 
Sbjct: 128 ARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGSTGIAVGMATSIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C A   LI  P+  +E+LLE+I GPDFPTGG IV  + SI+E+Y+ GRG FR R
Sbjct: 188 HNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILEAYKTGRGSFRTR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+W  EE  RG++ IVVTEIPY VQKSRLIEKIAEL++A+++PLL+DIRDESAEDVR+VL
Sbjct: 248 AKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRVVL 307

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P+N+++DP+LLM S+F L+D+E RF LNMNVLS G VP+VM L  +L+EWL H++EVL 
Sbjct: 308 VPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVLQEWLEHQKEVLV 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS+ R+  I+ R+E+L+G L+AYLNIDE+I IIR ED  K  ++  F LTE Q +AILN
Sbjct: 368 RRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDDAKASLIKAFDLTEVQAEAILN 427

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE++IK E D L  EK  +++LL S K+QWN+++ ++ E+ + +   T++G
Sbjct: 428 MRLRSLRKLEEFEIKKEHDKLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIG 487

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT F      D   + QAMIEKEPITVVIS +GWIR+LK H  D++ L FK+GD L +
Sbjct: 488 ARRTDFGTADDRDLEEINQAMIEKEPITVVISEKGWIRTLKGHVQDVTNLAFKQGDQLHL 547

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           + HA TT +IL+ ++ GK YTL A  L  GRGHGE I+L++D++  Q+I++AFV+D   K
Sbjct: 548 SFHAETTSKILIFTSGGKFYTLGADKLPGGRGHGEPIRLMLDMDETQEIISAFVHDPERK 607

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LL+ +     F+V+E ++IANTRKGK  L V++  K  L V   GD+VAV+G NRKLL F
Sbjct: 608 LLMSTDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIGDYVAVIGHNRKLLTF 667

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + QI  M+RG+GVRLQ Y+DGGISD+  F   EGLTW D++GR + R+  ++  W G R
Sbjct: 668 PLAQIAVMTRGRGVRLQRYRDGGISDIKTFDSEEGLTWTDASGRIFKRTLEEMQDWRGDR 727

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G L P GFPR+ KF  S
Sbjct: 728 GQAGRLPPNGFPRTNKFDGS 747


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/750 (55%), Positives = 544/750 (72%), Gaps = 1/750 (0%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG   +S          + V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ 
Sbjct: 1   MGK-TVSPPAPPSSGGTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYG 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD G AFKK A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 60  MQILRLDPGTAFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGN 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAAYRYTEARMT VA L+L+G+DED+VDFRD Y+ +  EPVV PS  PNLLANG 
Sbjct: 120 IDGDGAAAYRYTEARMTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HN+ E+C+AAL L+ + + S ++LL +  GPDFPTGG++VES++SI 
Sbjct: 180 QGIAVGMATSIPPHNLAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIA 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  R+RARW  EE  RG+W IVVTEIPY VQKSRLIEKIAEL+  K++PL+ D
Sbjct: 240 ETYRTGRGSLRLRARWSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAEDVR+V+ PK+R++DP LLME +F L+++ETRFP+N+NVL  G  P+V+     
Sbjct: 300 IRDESAEDVRVVIEPKSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEA 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L++WL HRREVL RR+  R+  I RR+E+L G+LI +LN+DE+I IIR ED+PK  +   
Sbjct: 360 LQQWLDHRREVLVRRARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKERLQLA 419

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSL++ QV+ +L+ RLRSLR+LEE QI+ E + L  EK ++++LL    +QW +IA EIR
Sbjct: 420 FSLSDMQVNYVLDTRLRSLRRLEEMQIQREHEALEKEKLELEALLADEARQWKKIAAEIR 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ +   T LGRRRT+F E     +     AM+E+EP+TVV+S +GWIR+LK    DL
Sbjct: 480 DLKKKYGPETKLGRRRTSFAEAPDVGEIDFASAMVEREPVTVVVSEKGWIRALKGQVADL 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FK  DSL I+  A TT +IL+LS DGK +TL AG L  GR  GE ++LL D+   +
Sbjct: 540 SGLQFKGDDSLHISFFAETTSKILVLSGDGKIFTLDAGKLPGGRSQGEPLRLLADIGEGE 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +   F Y    K+LV +  G  F+V + E+I  TRKGK  L V      K++V   GDH
Sbjct: 600 SVAAVFPYAPGQKMLVATDDGRGFVVSQDEMIGGTRKGKLLLNVEKPGIAKIIVPADGDH 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA++GENRKLL+F +DQ+PEM+RGKGVRLQ Y+DGG++D   F I EGL+W DSAGR + 
Sbjct: 660 VAIIGENRKLLVFPLDQVPEMARGKGVRLQKYRDGGVADAKVFSIVEGLSWKDSAGRVFV 719

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            ++ +L  W+G R   G L P+GFP++ +F
Sbjct: 720 VAKPELAEWIGNRAEAGRLPPRGFPKNNRF 749


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/742 (61%), Positives = 586/742 (78%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +  +E+++ + LR AL+ERYLAYALSTI  RA+PD+RDG KPVHRRIIHAM  + L+ G 
Sbjct: 8   SFDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGK 67

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+ K ARIVG+V+GKLHPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA R
Sbjct: 68  AYTKCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG+SGIAVGMATS
Sbjct: 128 YTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATS 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNV E+C+AAL LI NP    + L ++++GPDFPTGGI+VE ++SI +SYR GRG F
Sbjct: 188 IPPHNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLF 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+R+RW  EE  RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+R
Sbjct: 248 RLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIR 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L   L++WL HR+E
Sbjct: 308 IVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKE 367

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS++R+  ID R+EIL+G LIAYLN+DE++ IIR  D+PK  ++  F LTENQ ++
Sbjct: 368 VLIRRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPKKELIVCFKLTENQAES 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE++I+ E D+L  EKEK+ +LL S  +QW  IA EI  V++ F   T
Sbjct: 428 ILNMRLRSLRKLEEFEIRKEFDSLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDT 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG+RRTTF +  R D   + QAMIEKEP+T+VIS +GW+R+LK H  D   L FKEGD 
Sbjct: 488 FLGKRRTTFEDAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDC 547

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           LK+A  A TTD+I+++ST GK +T+ A  L  GRGHGE I++L+D++   DI+TAFVY+ 
Sbjct: 548 LKLAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMDKEHDILTAFVYNM 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             K L++SS GN FIV E +IIANTRKGK  + + S + +KL + V GD++AVVGENRK+
Sbjct: 608 EGKRLLISSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSLKLCIPVKGDYIAVVGENRKM 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIFSI+QIPEMSRGKGVRLQ YKDGG+ D   F + EGL+W D+A RS+NR  ++L+ W+
Sbjct: 668 LIFSIEQIPEMSRGKGVRLQRYKDGGVVDAKTFTLSEGLSWQDTAERSFNRQADELVEWM 727

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
           G R G G  VPKGFP+SGKF S
Sbjct: 728 GTRAGAGRFVPKGFPKSGKFSS 749


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/762 (51%), Positives = 527/762 (69%), Gaps = 30/762 (3%)

Query: 16  NVKAVSLRFALE----ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + K V L   L     ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     
Sbjct: 6   DTKPVDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGG 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RY
Sbjct: 66  FRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT VAE +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGIAVGMAT+I
Sbjct: 126 TEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++YR G+GGFR
Sbjct: 186 PPHNIAELCDACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFR 245

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R RW VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+
Sbjct: 246 LRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDIRM 305

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++ P++RS+DPD+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ +L HR+EV
Sbjct: 306 IIEPRSRSVDPDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------- 422
           L RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++            
Sbjct: 366 LQRRSTHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGRDHPRALN 425

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         LTE Q +AILN+RLRSLR+LEE ++  E + L+ E+  ++ LL + 
Sbjct: 426 EADYVPPVSTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGLEDLLENP 485

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             QW  I  ++R  K+ F K  D G RRTTF E +  +     +AMI++EPITVV S  G
Sbjct: 486 GLQWASITEQLRATKKQFGKDWDGGARRTTFSEAAVIE-DVPIEAMIDREPITVVCSQMG 544

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           W+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L  GRG GE
Sbjct: 545 WVRAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGGRGMGE 604

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++L+IDL +  +IVT   +    KLLV SS G+ F+V E++++A TR GK  L V  + 
Sbjct: 605 PLRLMIDLPNEAEIVTILTHAPDRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDT 664

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
           +  +   V GD VAVVGENRK+L+F ++ +PEM RGKGVRLQ YKDGG+SD   F   EG
Sbjct: 665 RAMICKPVNGDTVAVVGENRKVLVFPLEDLPEMGRGKGVRLQKYKDGGLSDATTFMRAEG 724

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           L+W+D AGR   RSE DL  W GKR   G + P+GFPR  KF
Sbjct: 725 LSWLDPAGR--TRSETDLAEWTGKRATAGRMAPRGFPRDNKF 764


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/770 (51%), Positives = 533/770 (69%), Gaps = 28/770 (3%)

Query: 6   ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+ + + ++    +S  LR AL ERYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDQDDITDKEPADLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+CEA + LI  P+   + LL+Y+ GPDFPTGG+IVE  E+I ++Y
Sbjct: 181 AVGMATNIPPHNIAELCEACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R G+GGFR+R RW VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+RD
Sbjct: 241 RTGKGGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVR+++ P++RS+D D+LM  +F   D+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESADDVRMIIEPRSRSVDADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVLQA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HR+EVL RRS  R++ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++    
Sbjct: 361 FLDHRQEVLQRRSQHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWG 420

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E + L+AE+  
Sbjct: 421 KDHPRALNEADYVPPVPTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMAERAA 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S + QW  I  ++R  K+ F K  D G RRTTF E +  +     +AMI++EPI
Sbjct: 481 LEDLLESPELQWASITEQLRATKKQFGKDWDGGARRTTFSEATVIE-DVPIEAMIDREPI 539

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GW+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A +L
Sbjct: 540 TVVCSEMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSL 599

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L+IDL +  +I+T   +    KLLV SS G+ F+V E++++A TR GK 
Sbjct: 600 PGGRGMGEPLRLMIDLPNEAEIITILTHAPNRKLLVASSAGDGFVVPEADVVAQTRTGKQ 659

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            L V  + +  +   V GD VAVVGENRK+L+F + ++PEM RGKGVRLQ YKDGG+SD 
Sbjct: 660 VLNVRGDTRAMICKAVQGDTVAVVGENRKVLVFPVGELPEMGRGKGVRLQKYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F   +GL+W D AGR   RSE +L  W GKR   G + P+GFPR  KF
Sbjct: 720 TTFMQADGLSWQDPAGR--TRSETELAEWTGKRATAGRMAPRGFPRDNKF 767


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/735 (55%), Positives = 544/735 (74%), Gaps = 2/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI+HAM ++ LD G+ FKK 
Sbjct: 12  SVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLKLDPGSGFKKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEAR
Sbjct: 72  ARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ A L+L G+D+DAVDFR TY+  + EPVV P+ FPNLLANG+ GIAVGMATSIP HN
Sbjct: 132 LTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A+L L+++P      LL+++ GPDFPTGGI+VE      E+Y  GRG FRVRAR
Sbjct: 192 AAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAEAYATGRGAFRVRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE GRG++ +VVTEIPY V KSRL+EKIAEL+  K++PLL D+RDESAED+R+VL P
Sbjct: 252 WHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVLEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           + R++D ++LMES+F L+++E+R  LNMNVL  G+VP+V+ L   L+EWL HRREVL RR
Sbjct: 312 RARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADALREWLDHRREVLLRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I  R+E+L G LIAYLN+DE+I IIR ED+PK  ++  F LT+ Q ++ILN+R
Sbjct: 372 SRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDLQAESILNMR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +++ E   L  E+E+++ L+ S   QW  I  EIRE ++ +   T++GRR
Sbjct: 432 LRSLRRLEEMELRKEHAALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTYGPDTEIGRR 491

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F       ++   +A++E+EPIT+V+S +GWIR+LK H  D++ + FK  D+L  A 
Sbjct: 492 RTDFAVPPDVHESAFTEALVEREPITIVMSAKGWIRALKGHVADVTGVPFKGDDTLAHAF 551

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           +A TT +I++LS++G+ +TL A  L  GRGHGE ++L+I+L    +IV+ F +    KL+
Sbjct: 552 YAETTSKIMVLSSNGRFFTLDAAKLPGGRGHGEPVRLMIELEQEAEIVSVFAHRPGGKLI 611

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S +G  F+V E + +ANTRKGK  L V + +   L V   GD VAV+G+NRKLL+F I
Sbjct: 612 VASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPADGDTVAVIGDNRKLLLFPI 671

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG+GVRLQ YK+GG+SD+  F   +GLTW DS+GR++  +E  LL W G+R  
Sbjct: 672 AQVPEMTRGRGVRLQRYKEGGLSDLKVFNRADGLTWEDSSGRTWTVTE--LLDWQGERAS 729

Query: 736 VGSLVPKGFPRSGKF 750
            G L PKGFPR+ KF
Sbjct: 730 SGRLPPKGFPRNNKF 744


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/753 (52%), Positives = 534/753 (70%), Gaps = 10/753 (1%)

Query: 1   MGVDNISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D      T  +   +   +  L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI
Sbjct: 1   MSDDPNVPDPTPPDPSQDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM E+ L    AF+KSA+I G+V+G  HPHGD ++YD++ RLAQPF  RYPL+ GQGN
Sbjct: 61  LFAMRELRLSPTGAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FGNIDGD+ AA RYTEAR+T  AE +++G+ E+AVDFR  Y+    EP+V P+ FPNLL 
Sbjct: 121 FGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLC 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVGMAT++P HN+ E+ +A L LI  P+   + L+  + GPDFPTGG++VESRE
Sbjct: 181 NGASGIAVGMATNVPPHNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRE 240

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +I E+YR GRG  R+RARW VE++GRG W IVVTEIPYQVQKS+LIE++AE+I  K++P+
Sbjct: 241 TIAEAYRTGRGSLRLRARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPI 300

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           L D+RDESAED+RIVL P+ R++D + LM ++F +SD+E RF LNMNVL  GRVP+V  L
Sbjct: 301 LADVRDESAEDIRIVLEPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSL 360

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+ +L HRREVL RRS+ R+  I  R+E+L+G +IA+LN+D +I IIR+ED PK VM
Sbjct: 361 KEVLRAFLDHRREVLVRRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAVM 420

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F L++ QV+AILN+RLR+LR+LEE ++++E +NL  E+E + ++L     QW +IA 
Sbjct: 421 IAEFKLSDVQVEAILNMRLRALRRLEEIELRAEHENLTREREGLAAMLADEGAQWARIAE 480

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE +  F KS   G+RRT   E           AMIE+EPITV++S  GWIR++K H 
Sbjct: 481 ELRETRAKFGKSASGGQRRTEIGEAGEVA-EIDMDAMIEREPITVILSKMGWIRAMKGHQ 539

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
              + + FK+GD   +ALHA TTD++++ + +G+ YTLPA NL  GRG GE ++L+IDL 
Sbjct: 540 PLDAEVKFKDGDGPFMALHAETTDKLMVFAANGRFYTLPANNLPGGRGMGEPLRLMIDLP 599

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           ++  ++  F +    + LV S  G+ F+V  ++I+A TR GK  L      +  L  +VT
Sbjct: 600 NDAAVIDMFPWRDGERYLVASKAGDGFVVAGADILAQTRAGKQVLN----GEAALCRRVT 655

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           GDHVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD +C  + EGL W ++ GR
Sbjct: 656 GDHVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAVCITLAEGLRWQETGGR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              RSE DL  WLGKR G G + P+GFPR  +F
Sbjct: 716 --TRSEPDLTEWLGKRAGAGYMAPRGFPRDNRF 746


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/771 (50%), Positives = 536/771 (69%), Gaps = 27/771 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++ +      + V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRII+AM 
Sbjct: 1   MNDLLDDPDQAPQAVAE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  ELRLGSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+ E+AVDFRD Y+   +EPVV P+ FPNLLANG+SG
Sbjct: 120 GDNPAASRYTEARMTAVAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSSG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   + LL Y+ GPDFPTGGIIVE RE+I E+
Sbjct: 180 IAVGMATNIPPHNIPELVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+R R+ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D+R
Sbjct: 240 YRTGRGAFRLRCRYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+D+R++L P+++++DP++LM  ++  +D+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 300 DESADDIRVILEPRSKNVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
            +L  RREVL RRS  RM+ ID R+E+L+GL++A+LN+D +I IIR ++ PK  ++    
Sbjct: 360 AFLDFRREVLQRRSVHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDPKAALMREDW 419

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  LTE Q +A+LN+RLR+LR+LEE  +  E D L+ E+ 
Sbjct: 420 GRDFVRAMDEADYVPPAPGAPDGLTEVQAEAVLNMRLRALRRLEEMALVKERDALMEERA 479

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL S   QW  I+ ++RE K+ F K  + G RRTTF E    ++  + +AMIE+EP
Sbjct: 480 GLEDLLESEDLQWAAISDQLREAKKTFGKDYEGGARRTTFAEAGEVEEVPI-EAMIEREP 538

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD      HA TTDR+L+ ++ G+ YT+ A N
Sbjct: 539 ITVVCSQMGWIRAMTGHIDLGRELKFKDGDGPSFMFHAETTDRLLVFASTGRFYTISAAN 598

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +  +I+  F++    K+L+ SS G+ F+V E E++A TR GK
Sbjct: 599 LPGGRGMGEPLRLMVDLPNEAEIIDIFIHKPGGKMLLASSAGDGFVVPEEELLAQTRTGK 658

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L V  + + ++   V+GDHVAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD
Sbjct: 659 QVLNVRGDTRARVCKPVSGDHVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGLSD 718

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              F + EGL+W+D AGR   R+E DL  WLGKR G G + P+GFPR  +F
Sbjct: 719 ATTFTLAEGLSWLDPAGR--TRTETDLGEWLGKRAGTGRMAPRGFPRDNRF 767


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/736 (60%), Positives = 571/736 (77%), Gaps = 1/736 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G  +KK 
Sbjct: 13  DIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRILRLDPGQGYKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD+LVRL+Q F  RYPLI GQGNFGN+DGDS AA RYTEAR
Sbjct: 73  ARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNVDGDSPAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT VA L+L+G+DEDAVDF+ TYNEE+ EP+V P  FPNLLANG+SGIAVGMATSIP HN
Sbjct: 133 MTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSSGIAVGMATSIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI+NP+ + + LL ++ GPD PTGG+IV+++  I E+Y  GRG FRVRAR
Sbjct: 193 AAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIREAYDTGRGSFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG + +VVTEIPYQVQKSRLIEKIAEL++A+++PLL DIRDESAEDVRIV+ P
Sbjct: 253 WETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDIRDESAEDVRIVIEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP+LLMES+F L+D+E+R PLNMNVLS G+VP+VM L  +L EWLAH+R+VL RR
Sbjct: 313 KSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVLAEWLAHQRDVLVRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S FR+  I+RR+EIL G LIA+LN+DE+I IIR ED+PK  ++  F LT+ Q +AILN+R
Sbjct: 373 SRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKTELMRTFELTDTQAEAILNMR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE+++K E D L  EK + ++LL S ++QW  IA E+REV+E +SK T +GRR
Sbjct: 433 LRSLRKLEEFELKREFDTLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +        +  A+IEKEPITVV+S +G++R +K H  D S+L F+EGD L++A 
Sbjct: 493 RTMFADAPNRALDDITVALIEKEPITVVLSKKGFLRGMKGHLADFSSLAFREGDGLQLAF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
           HA TTD++L LST G+A+T  A  L  GRG GE I+L  +L  +QDI  AFV D   + L
Sbjct: 553 HAMTTDKLLFLSTGGRAFTHGADKLPGGRGQGEPIRLAFELEDDQDIALAFVADPERRRL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           +VSS GN F+  E++++ANTRKGK  + V+ + K+ L   V  GDHVA+VGENRKLL+F 
Sbjct: 613 LVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLLVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + Q+P+M+RGKGVRLQ YKDGG+SD   F + +GLTW DSAGRS+ RSE +LL W G R 
Sbjct: 673 LVQVPQMTRGKGVRLQRYKDGGLSDARVFAMADGLTWTDSAGRSFTRSETELLEWRGDRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G LVPKGFP++ +F
Sbjct: 733 QAGRLVPKGFPKTNRF 748


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/743 (53%), Positives = 536/743 (72%), Gaps = 5/743 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +   V  +++  SL  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD 
Sbjct: 2   TQPAVSGDIRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKK AR+VG+VIGK HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA
Sbjct: 62  EGGFKKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++T VA  +++ +D+D VDFR TY+  + EPVV P+ FPNLLANG +GIAVGMA
Sbjct: 122 MRYTEAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HNV EIC A   LI  P+  ++ L+ ++ GPDFPTGG++VES+ SI E+YR GRG
Sbjct: 182 TNIPPHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHEAYRSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+RA+W VE++  G + I+VTEIPYQVQKS++IEKIAEL+  K++PLL DIRDESAED
Sbjct: 242 SFRLRAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADIRDESAED 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+VL P+NR+++ ++LME +F  +D+E R  LNMNVL    VP VM L  +L+ +L HR
Sbjct: 302 VRVVLEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVLQAFLDHR 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            EVL RRS FR+  I+RR+E+L+G L+AYLN+DE+I IIR ED+PK VM+  F LTE Q 
Sbjct: 362 MEVLERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAVMMRTFGLTEVQT 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLRSLRKLEE++I+ E D L AEK  +++LL    ++W+ IA ++   ++ F  
Sbjct: 422 EAILNMRLRSLRKLEEFEIRKEHDQLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGP 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            T LG RRT   +          +A +E+EPIT+++S +GWIR++K H   L  + FKEG
Sbjct: 482 GTPLGDRRTQLADAPS-AVVVPIEAFVEREPITLLLSEKGWIRAMKGHVDQLDGVKFKEG 540

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D LK+AL A TTD++L+ ++DG+ YT+    L SGRG GE ++L+ID+ ++ +++  F +
Sbjct: 541 DQLKLALKAETTDKLLVFTSDGRFYTIGGDKLPSGRGFGEPLRLMIDMANDAEVLCVFAH 600

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGEN 667
               KLL+ SS G  FIVEE+E++A T+ GK  L +    EK    +   GD VA++G+N
Sbjct: 601 KPGRKLLLSSSGGRGFIVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDN 660

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RKLL+F  ++IP M+RG+GV LQ Y+DGG++D+  F + +GL+W  S  R   R+E DL 
Sbjct: 661 RKLLVFMAEEIPVMARGRGVLLQKYRDGGVADIKVFTLADGLSW-KSGER--TRTEQDLT 717

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            WLGKR  VG L P GFPR+ KF
Sbjct: 718 PWLGKRASVGRLPPTGFPRANKF 740


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/776 (51%), Positives = 536/776 (69%), Gaps = 32/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +I++ + L   NV    LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MSDITDPSDLDPRNVSE-PLRLALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  ELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EPVV P++FPNLLANG+SG
Sbjct: 120 GDNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  PE   + LL ++ GPDFPTGGIIVE  E+I  +
Sbjct: 180 IAVGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIANA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR G+GGFR+R RW VE++GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+R
Sbjct: 240 YRTGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDVR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+R+++ P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 300 DESAEDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------- 414
            +L HRREVL RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR +  PK        
Sbjct: 360 AFLDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADPKAALMAEDW 419

Query: 415 ---------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                          P   +  SLTE Q DAILN+RLRSLR+LEE ++  E   L+AE+ 
Sbjct: 420 GKKHSRATDESDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQSELMAERA 479

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL-----GRRRTTFCEVSRADKATLQQAM 514
            ++ LL+S   QW+ I  ++R  K+ F K   L     G RRTTF E    +     +AM
Sbjct: 480 GLEDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIE-DVPLEAM 538

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           I++EPITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT
Sbjct: 539 IDREPITVVCSEMGWIRAMTGHIDLNRELKFKDGDGPRFVFHAETTDRLLVFGSNGRFYT 598

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           + A +L  GRG GE ++L++DL ++  IV  F++    KLLV SS G+ F+V E E++A 
Sbjct: 599 IGAVSLPGGRGMGEPLRLMVDLPNDVQIVDIFIHKPGRKLLVASSAGDGFVVPEDEVLAQ 658

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
           TR GK  L V  + K  +   + G+ VAVVGENRK+L+F +D++PEM RGKGVRLQ YKD
Sbjct: 659 TRSGKQVLNVRGDAKAMICAPIKGEAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKD 718

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GG+SD   F + EGL+W+D AGR   R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 719 GGMSDATTFTLSEGLSWLDPAGR--TRTESDLTEWTGKRASAGRMAPRGFPRDNRF 772


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/771 (50%), Positives = 530/771 (68%), Gaps = 27/771 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + ++ +   +  E V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MSDLLDDPNMQPEAVSE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  ELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT  AE +L G+ EDAVDFRD Y+    EPVV P+ FPNLLANG+SG
Sbjct: 120 GDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSSG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI +P+   + LL+YI GPDFPTGG+IVE  ESI ++
Sbjct: 180 IAVGMATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+R
Sbjct: 240 YLTGRGAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESADDVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            +L  R++VL RRS  RM+ ID R+E+L+GL+IA+LN+D +I IIR ++ PK        
Sbjct: 360 AFLDFRQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDPKAALMREDW 419

Query: 417 -----------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                              +   LTE Q +AILN+RLRSLR+LEE ++++E D L+AE+ 
Sbjct: 420 GRTVPRAMSEADYVPPPPTAEAGLTEVQAEAILNMRLRSLRRLEEMELRAERDTLMAERA 479

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL+    QW  +A +++EVK+ F K+  +G RRT F E    +     +AMI++EP
Sbjct: 480 GLEDLLDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAEAGSVE-DVPLEAMIDREP 538

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD  +   HA TTDRIL+  ++G+ YTL A N
Sbjct: 539 ITVVCSQMGWIRAMTGHLDLSRELKFKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASN 598

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +   IV   ++    KLLV S  G+ FIV E E+IA TR GK
Sbjct: 599 LPGGRGMGEPLRLMVDLPNEAGIVDLLIHKPGRKLLVASDAGDGFIVPEEEVIAQTRSGK 658

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L +    +  +   VTGDHVA VG+NRK+L+F++D++PE+ RGKGVRLQ YKDGG+SD
Sbjct: 659 QVLNLKEPARALVCRPVTGDHVACVGDNRKVLVFALDELPELGRGKGVRLQKYKDGGLSD 718

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              F +  GLTW D AGR   R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 719 ATTFDLAAGLTWRDPAGR--TRTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/771 (35%), Positives = 428/771 (55%), Gaps = 31/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +S         V+ +S+   ++  YL YA+S I +RA+PD+RDG KPV RRI++ 
Sbjct: 1   MDGGAMSEQQ---IGRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL   A ++KSA IVGEV+   HPHGD +VYD+LVR+ QPF  RYPLI GQGNFG+
Sbjct: 58  MYEMGLRPNAKYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEAR+  +AE +L  +D+  VDF   Y++   EP V P++ PNLL NG 
Sbjct: 118 VDGDSAAAMRYTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A + LIDNPE ++E+L+E + GPDFPTGGII+  RE I+
Sbjct: 178 SGIAVGMATNIPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIIL-GREGIL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VRAR  +EE GRG   I+VTE+PYQV K+ LIE+IAEL+ + R+  + D
Sbjct: 237 AAYATGRGRIVVRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R   P  ++ ++F  + ++T F +NM  L  G +P+V+ L  +
Sbjct: 297 LRDESDRDGMRIVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRL 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVM 417
           L+ +L HR++V+ RR+ F ++  +RR  +L+GL IA  ++DE+I+ IRN    +  +  +
Sbjct: 357 LQLYLEHRQQVIRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF+LTE Q +AIL+++LR L  LE  +I+ E   LLA   ++ +LL    +    +  
Sbjct: 417 MARFNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRK 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+KE +        RRT   E S        + ++ +  + V +++RG+++      
Sbjct: 477 ELLELKERYGDP-----RRTQIQEASS---EISDEDLVPRVDVIVTLTSRGYVKRSTNGH 528

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     ++ +  ++ DS++  + A T D +L  +  G+ + LP   L        G
Sbjct: 529 FRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I   ++L   +++ T      + +   L   + +G    V   E       G   + +
Sbjct: 589 LPIVNFLNLQPGEEVTTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V   +G D V +V  + + + F  D +  M R   GV      +G       
Sbjct: 649 DAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAAE 708

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +  +   Y +  +        RGG G +  K  PR+G   ++
Sbjct: 709 VVRPEGDLLL-VSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAA 758



 Score = 93.7 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 72/194 (37%), Gaps = 14/194 (7%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++ ++           L A+    GD L        +D ++L++  G+A   
Sbjct: 619 FFCTRQGRVKRVRLEEFSNVRASGLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRF 678

Query: 576 PAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           P  ++   GR  G  I   + L+    ++ A V      LL+VS  G        E    
Sbjct: 679 PEDDVRPMGRQAGGVIG--VRLDEGDAVIAAEVVRPEGDLLLVSQYGYGKRTSLDEFRTQ 736

Query: 635 TR--KGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R   G   +KV   +       V    D V +V    ++++  + QIP   R  +GV +
Sbjct: 737 GRGGSGVIAMKVTPRTGHVAAATVAREEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSV 796

Query: 690 QSYKDGGISDVICF 703
              ++G     +  
Sbjct: 797 MRLQEGDEVASVAV 810


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/771 (50%), Positives = 532/771 (69%), Gaps = 27/771 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + ++ +   +  E V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MSDLLDDPNMQPEAVSE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  ELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT  AE +L G+ EDAVDFRD Y+    EP+V P+ FPNLLANG+SG
Sbjct: 120 GDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSSG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI +P+   E LL YI GPDFPTGG+IVE  ESI ++
Sbjct: 180 IAVGMATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI  +++P+L D+R
Sbjct: 240 YLTGRGAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+DVR+VL P+++++DP++LM  ++  S++E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESADDVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            +L  R+EVL RRS+ RM+ ID R+E+L+GL++A+LN+D +I IIR +D PK        
Sbjct: 360 AFLDFRQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDPKAALMREDW 419

Query: 417 -----------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  LT+ Q +AILN+RLRSLR+LEE ++++E D L+ E+ 
Sbjct: 420 GRTVPRAMSEADYVSPPPTDEPGLTDVQAEAILNMRLRSLRRLEEMELRAERDALMQERA 479

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL     QW  +A +++EV++ F K+  +G RRT F E    ++  L +AMI++EP
Sbjct: 480 GLEDLLEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAEAGSVEEVPL-EAMIDREP 538

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD+ +   HA TTDRIL+  ++G+ YT+ A N
Sbjct: 539 ITVVCSQMGWIRAMTGHLDLSRELKFKDGDAPRFMFHAETTDRILVFGSNGRFYTISASN 598

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +   IV   ++    KLLV S+ G+ FIV E E+IA TR GK
Sbjct: 599 LPGGRGMGEPLRLMVDLPNEAAIVDLLIHKPGRKLLVASTAGDGFIVPEDEVIAQTRSGK 658

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
             L +    +  +   VTGDHVA VG+NRK+L+FS+D++PE+ RGKGVRLQ YKDGG+SD
Sbjct: 659 QVLNLKDPARASVCRPVTGDHVACVGDNRKVLVFSLDELPELGRGKGVRLQKYKDGGLSD 718

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              F + EGLTW D AGR   R+E++L  WLGKR G G + P+GFPR  +F
Sbjct: 719 ATTFNLAEGLTWRDPAGR--TRTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/734 (53%), Positives = 534/734 (72%), Gaps = 4/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM  + LD G+ FKK A
Sbjct: 12  IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+
Sbjct: 72  RVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNAAAMRYTEARL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA  +++G+D+DAVDFR TY+ ED EPVV P+ FPNLLANG+SGIAVGMAT+IP HNV
Sbjct: 132 TAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHNV 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+CEA L LI  P    E LL ++ GPDFPTGG++ E  ++I E+YR GRG  R+RARW
Sbjct: 192 GELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRARW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E +  G + IV+TEIPYQ+QK++L+E+IAELI  +++P+L D+RDESA+D+R+VL P+
Sbjct: 252 EKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDESADDLRLVLEPR 311

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           NR++D + LME +F L+D+E RF LNMNVL    VP+V+ L   L  +L HR  VL RRS
Sbjct: 312 NRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVVLGRRS 371

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I+ R+E+L G LIAYLN+DE+I IIR ED+PKP +++ F L++ Q +AILN+RL
Sbjct: 372 RHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPALMAAFGLSDVQTEAILNMRL 431

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLR+LEE +I+ E D L AEK  +++LL      W  IA +IRE ++ F   T LGRRR
Sbjct: 432 RSLRRLEEMEIRREHDALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T              +A++E+EPITV++S RGW+R++K H        FKEGD+L +ALH
Sbjct: 492 TELGSA-PTAVIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKFKEGDALLLALH 550

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L+L + G+ +TLPA  L  GRG GE ++L++DL ++ DIV+  V+D   +L++
Sbjct: 551 AQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSLLVHDPARRLIL 610

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+VEE +++A TR GK  + V + E+  L  +V GDHVAV+G+NRKLL+F + 
Sbjct: 611 AASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRGDHVAVIGQNRKLLVFPLT 670

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+P ++RGKGV LQ YKDGGI+D+  F I +GLTW  S  R   R+E+DL  WLG R G+
Sbjct: 671 QVPVLARGKGVILQRYKDGGIADIKTFAIADGLTW-KSGER--TRTESDLTAWLGDRAGL 727

Query: 737 GSLVPKGFPRSGKF 750
           G L P+GFPR+  F
Sbjct: 728 GRLPPQGFPRTNSF 741


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/769 (52%), Positives = 539/769 (70%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+  T    NV  +S  LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MSDDTTDENLNVPDLSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT  AE +L+G+ E+AVDFR+ Y+   +EPVV P+ FPNLLANG+SGI
Sbjct: 121 DNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+CEA L LI  P+   + LL ++ GPDFPTGG IVE +E+I E+Y
Sbjct: 181 AVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIA+LI  K+IP+L DIRD
Sbjct: 241 RTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDIRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVRIVL P++++++PD+LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 301 ESAEDVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRR+VL RRS+ RM+ ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMREDWG 420

Query: 423 ---------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                LTE Q +AILN+RLRSLR+LEE ++K E D L+ E+  +
Sbjct: 421 RTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERDALMEERAGL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           D LLNS + QW+ IA +IRE K+ F K    G RR+ F E    ++  L +AMI++EPIT
Sbjct: 481 DDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPL-EAMIDREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV S  GWIR++  H      L FK+GD  +   HA TTDR+L   ++G+ YT+ A NL 
Sbjct: 540 VVCSEMGWIRAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLAFGSNGRFYTVSAANLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +   +V  F++ S  KLLV SS G+ F+V E +++A TR GK  
Sbjct: 600 GGRGMGEPLRLIVDLPNEAGLVDLFIHKSGRKLLVASSAGDGFVVPEDDVVAQTRSGKQV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L V  + +  +   VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SDV 
Sbjct: 660 LNVRGDNRALVCKPVTGDSVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGMSDVA 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F + +GL+W+D AGR   R+E +L  W GKR G G + P+GFPR  +F
Sbjct: 720 TFTMADGLSWLDPAGR--TRTEVELAEWTGKRAGSGRMAPRGFPRDNRF 766


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/737 (57%), Positives = 563/737 (76%), Gaps = 1/737 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V LR ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + LD G A+KK A
Sbjct: 14  IQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRVLRLDPGQAYKKCA 73

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+G+ HPHGD ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGDSAAA RYTEARM
Sbjct: 74  RIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNVDGDSAAAMRYTEARM 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA L+L+G+DE+AVDFR TYNEED EPVV P  FPNLLANG+SGIAVGMAT+IP HN 
Sbjct: 134 TEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATNIPPHNA 193

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL +I+NP+ ++++LL  I GPDFPTGG+IV++R +I ++Y  GRG FRVRARW
Sbjct: 194 AELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQAYETGRGSFRVRARW 253

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG W +VV EIPYQVQKSRLIEKIAEL+ A+++PLL DIRDESAED+RIVL PK
Sbjct: 254 EREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADIRDESAEDIRIVLEPK 313

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP++LMES+F L+D+E+R PLNMNVLS G+VP+V+ L  +L EWLAH+REVL RR+
Sbjct: 314 SKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVLAEWLAHQREVLERRA 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  I+RR+EIL G LI +LNID++I IIR ED+PK  ++  F+L++ Q +A+LN+RL
Sbjct: 374 RHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEPKQELMRFFTLSDVQAEAVLNMRL 433

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++++ E D L  EK + ++LL S ++QW+ +A E+R V+E FSK T LG+RR
Sbjct: 434 RSLRKLEEFELRREFDQLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKRR 493

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D   +  A+IEKE +T+V+S +G++R +K H  D S L F+EGD L IA H
Sbjct: 494 TRFADAPDHDIGDITTALIEKESVTIVLSKKGFLRGMKGHLADFSNLTFREGDGLNIAFH 553

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TTD++L +S  G+ +T+ A  L  GRG G+ I+L  DL    DI  AF  +   + L+
Sbjct: 554 AMTTDKLLFVSKHGRVFTMQADKLPGGRGQGDPIRLAFDLEDKDDIAAAFTAEPERRRLM 613

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
           VSS+G  F+  E ++I+ TRKGK  + V     ++L  ++  GD VA+VGENRKLL+F +
Sbjct: 614 VSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLLVFPL 673

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+P+M+RGKGVRLQ YKDGG+SD   FK+ EGLTW DSAGR++ RS+ +L+ W G R  
Sbjct: 674 SQVPQMARGKGVRLQRYKDGGVSDAKVFKLSEGLTWSDSAGRAFLRSDEELMEWKGDRAQ 733

Query: 736 VGSLVPKGFPRSGKFLS 752
            G LVPKGFP++ KF  
Sbjct: 734 AGRLVPKGFPKTNKFAG 750


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/734 (56%), Positives = 547/734 (74%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAEAYTTGRGSFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG+W + +TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ PK
Sbjct: 253 HQEDGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+LLMES+F L+++E++ PLN+NVL  GR+P+V+ L   L+EWL H R+VL RR 
Sbjct: 313 SRAVDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRC 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           S+R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+RL
Sbjct: 373 SYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++A ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TMFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLTFKTDDKLGQAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+G+ Y L    L  GRGHGE I++ IDL+ +  IV  FV+    K LV
Sbjct: 553 AETTSKLLLFATNGRFYALDVAKLPGGRGHGEPIRMFIDLDQDAAIVALFVHTGGRKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S  G  FIV E + + NTRKGK  L V    + + V  V+GD VAV+GENRKLLIF++D
Sbjct: 613 ASHDGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSGDSVAVIGENRKLLIFALD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ YKDGG+SD+  F   +G +W DSAGR ++ S  +L  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYKDGGLSDIATFTAKDGFSWRDSAGREFSASIKELAEWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G + PKGFP+S KF
Sbjct: 733 GRMPPKGFPKSNKF 746


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/745 (57%), Positives = 559/745 (75%), Gaps = 3/745 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   L    ++ + L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ 
Sbjct: 1   MADETILAPPPIEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAMRQLK 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD    FKK AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +A  +L G+DED VDFR+TY+ E+ EPVV P+ FPNLLANG+SGIAV
Sbjct: 121 AAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN  E+C+AAL LI +P+ S+E LL Y+ GPDFPTGG++V+    +VE+YR 
Sbjct: 181 GMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RARW  E+ GRG + I+VTEIPY VQKSRLIEK+A+L+ AK++PLL DI DES
Sbjct: 241 GRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDIDDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIV+ PK+R++D  LLME +F L+++E R PLNM VLS G+VPQV+ L  +L+EWL
Sbjct: 301 AEDIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVLQEWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRR VL RRS  R++ ID R+E+L GLLIAYLN+DE+I IIRNED+PKP +++RF+LT+
Sbjct: 361 DHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPALIARFALTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLRKLEE +I++E D L  E+E +  LL S + QW++I+ EI+ +K+ 
Sbjct: 421 VQAEAILNMRLRSLRKLEEIEIRAENDRLTTEREGLVELLGSDEMQWDRISAEIKGIKKQ 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K+T LG+R+T    +   D A   +A+I+KEP+TVV+S +GWIR+LK H  DL+ L F
Sbjct: 481 FGKATPLGKRKTVTAALPDIDVAVE-EALIDKEPVTVVLSEKGWIRALKGHDGDLAKLTF 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K  D LK+A+ A TTD+I+L +T+GK YTL A  L  GRG GE ++L+IDL+   +++  
Sbjct: 540 KTDDVLKVAIKAQTTDKIVLFATNGKFYTLEASELPGGRGQGEPVRLMIDLDEADELLET 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           FV+    KL+V SS GN F+V E E++A TRKGK  L +   E+  L     GD VAVVG
Sbjct: 600 FVHKPGRKLVVASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRPAEGDAVAVVG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           ENR+LL+F + ++ E++RG+GVRLQ YKDGG++DV  F    GL   D++GR    +E  
Sbjct: 660 ENRRLLVFPLAELNELTRGRGVRLQKYKDGGLADVQVFTAATGLKLSDTSGRVRTVTE-- 717

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  + G R   GS VPKG+P+SG+F
Sbjct: 718 LDEFKGARAAAGSAVPKGWPKSGRF 742


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/737 (56%), Positives = 553/737 (75%), Gaps = 1/737 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V  R ALEERYLAYALSTI  RA+PD+RDG KPVHRRI++AM E+ L+    + 
Sbjct: 10  DGPIEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMRELRLNPEGGYI 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+IVGEV+G  HPHG+Q++YD+L RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTE
Sbjct: 70  KCAKIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNIDGDNPAAERYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+ A LIL+G+DED V+FR  Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP 
Sbjct: 130 ARMTETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASGIAVGMATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HNV E+C A L LI +P  +IEKL+E + GPDFPTGG+IVE R++I+E+Y+ GRGGFRVR
Sbjct: 190 HNVDELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEAYKTGRGGFRVR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  E+  RG + IVVTEIPY VQK++L+EKIAEL+  K++P L D+RDESAE++R+VL
Sbjct: 250 ARWSKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVRDESAEEIRLVL 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK R +DP LLMES+F  S++E R  LNMNVLS G+VP V+ L  +L +WL HR EVL 
Sbjct: 310 EPKTRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLWQWLEHRIEVLV 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS+ R++ I+ R+E+L G LIAYLNIDE+I IIR ED PK  ++++F L++ Q +AILN
Sbjct: 370 RRSTHRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKAKLIAKFKLSDVQAEAILN 429

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRLRSL +LEE +I+SE D L  E+ ++  LL S + QW  ++ E++  +E +SK T +G
Sbjct: 430 LRLRSLSRLEEVEIRSEHDKLSKERRELKQLLKSEELQWEHVSNEVKTTREAYSKKTAIG 489

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           RRR+TF +    +   L  A++EKEP+TV++S +GW+R+LK H  DLS L FK+GD+LK 
Sbjct: 490 RRRSTFADAPEVEVD-LATALVEKEPVTVILSEKGWVRTLKGHQDDLSKLDFKQGDALKR 548

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A+ A TTD+++LL+T+GK +TL A  L  GRGHGE ++L+IDL  N DIV  FV+D + K
Sbjct: 549 AIKALTTDKLVLLTTNGKFFTLEANALPGGRGHGEPVRLMIDLEENHDIVEVFVHDPSRK 608

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           LLV S+ G  FIV E E+IA+TRKGK  L VS  ++ ++ V   GD+VA VG+NRKLL+F
Sbjct: 609 LLVASTAGYGFIVPEEEVIASTRKGKQVLNVSEPDEARVCVPAEGDYVATVGDNRKLLVF 668

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            ID++ EM+RGKGV LQ +KDG +SDV  FK  +GLTW+DSAGR +  +  ++  W+G+R
Sbjct: 669 KIDEVNEMTRGKGVILQRFKDGSLSDVRVFKKSDGLTWVDSAGREFTLAWGEMRDWVGER 728

Query: 734 GGVGSLVPKGFPRSGKF 750
              G +VP+GFPRS  F
Sbjct: 729 AQAGRVVPRGFPRSNSF 745


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/752 (52%), Positives = 521/752 (69%), Gaps = 23/752 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            LR A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G
Sbjct: 26  PLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISG 85

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T  A
Sbjct: 86  DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAAA 145

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++G+ E+AVDFRD Y+   +EP V P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 146 EALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELI 205

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  L LI  P    E LLE I GPDFPTGG+IVE +ESI ++Y  GRG FR+RARW  E+
Sbjct: 206 DGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWARED 265

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IV+TEIPYQVQKS+LIEKIA+LI  K++P+L DIRDESA+DVRI+L P+++++
Sbjct: 266 LGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDESADDVRIILEPRSKNV 325

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++LM ++F LS++ETRF LNMNVL  GR P+V  L  +L+ +L HRR+VL RRS  R+
Sbjct: 326 DPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRL 385

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------------ 422
             ID R+E+L+G L+A+LN+D +I IIR ++ PK  ++                      
Sbjct: 386 AKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKTPAP 445

Query: 423 ----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LTE Q +AILN+RLRSLR+LEE ++ SE D L+AE+ +++ LL     QW +IA E
Sbjct: 446 GEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARIADE 505

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +REV++ F K T LG+RRT F   +        + MIE+EPITVV S  GWIR++K H  
Sbjct: 506 LREVRKQFGKGTALGKRRTDFAVATEMA-EVSLEDMIEREPITVVCSKMGWIRAMKGHVA 564

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
              AL FK+GD  +   HA TTD++L    +G+ YTL    L  GRG GE I+L++DL +
Sbjct: 565 LDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDLPN 624

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             ++V  F++    +L+V S  G+ FIV E+E++A TR GK  L V S  +  L   V G
Sbjct: 625 EAELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAG 684

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D +A VGENRKLL+F+ D++PEM RGKGVRLQ YKDGG+SD+  F   +GL W+D+ GR+
Sbjct: 685 DAIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDGGLSDLRSFDRAQGLQWLDAGGRT 744

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              ++ +L  W GKR G G + P+GFPR  KF
Sbjct: 745 RTVADPELAEWSGKRAGTGRMAPRGFPRDNKF 776


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/736 (55%), Positives = 539/736 (73%), Gaps = 1/736 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++AM  + LD G A KK
Sbjct: 12  DGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAMRMLRLDPGTAHKK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGD +VYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+ AA RYTE 
Sbjct: 72  CARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNPAAQRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+VA L+L G++EDAVDFR  Y+ ++ EPVV P+ FPNLLANG  GIAVGMATSIP H
Sbjct: 132 RMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQGIAVGMATSIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI +P  +  +L  ++ GPDFPTGG++++S E+I E+YR GRG FRVRA
Sbjct: 192 NAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAEAYRTGRGAFRVRA 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG W +VVTEIPY V K+RLIEK+AEL+  K++PLL D+RDESAEDVRIVL 
Sbjct: 252 RWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADVRDESAEDVRIVLE 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L  +L+EWL HRR VL R
Sbjct: 312 PRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVLREWLDHRRTVLQR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+  I+RR+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q +AIL+ 
Sbjct: 372 RSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRHFQLTEVQANAILDT 431

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E   L AEK  +D+LL+S   QW  IA ++R VK+ F   T LGR
Sbjct: 432 RLRSLRKLEEMELKREQAALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGPETALGR 491

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT           L +AMIE+EPITV++S +GWIR+LK H  DLS + FK  D+LK++
Sbjct: 492 RRTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRALKGHVADLSTVQFKGDDALKLS 551

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               TT ++L+L+T+GK +TL A  L  GRG G+ I+L+ DL+   DIVT F + +  KL
Sbjct: 552 FPTETTAKLLVLATNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGSDIVTVFPFRAGAKL 611

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           L  +S G  F      ++ANTRKGK  + +     +   V+   GDHVAV GENR L++F
Sbjct: 612 LFGTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVF 671

Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +IP+M+RGKGVRLQ Y++  ++ +  F++ EGL+W DSAGR+      +L  W+G R
Sbjct: 672 PLTEIPDMARGKGVRLQRYRESTLAYLSVFRLAEGLSWPDSAGRTRTVVGEELAKWVGHR 731

Query: 734 GGVGSLVPKGFPRSGK 749
           G VG++ P+GFPRS +
Sbjct: 732 GTVGAMAPRGFPRSNR 747


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/727 (58%), Positives = 549/727 (75%), Gaps = 3/727 (0%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             ++LR ALEERYLAYALSTI  RA+PD+RDG KPVHRR++ AM ++ LD G+ FKKSAR
Sbjct: 12  HEINLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAMRQLKLDPGSGFKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIG+ HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGN+DGD+AAA RYTEAR+T
Sbjct: 72  VVGDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNVDGDNAAAMRYTEARLT 131

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +VA  +L G+DED VDFRDTY+ EDSEP V P  FP LLANG +GIAVGMATSIP HN  
Sbjct: 132 EVAAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAAGIAVGMATSIPPHNAA 191

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+AAL LI +P    EKL+E++ GPDFPTGGIIVE R +++E+Y  GRGGFRVRARW 
Sbjct: 192 ELCDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLEAYETGRGGFRVRARWE 251

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            EE+ RG + IVVTEIPYQVQKS+L+EKIAEL+ A+++PLLED+RDESAE++R+VL PK 
Sbjct: 252 QEELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDVRDESAEEIRLVLVPKA 311

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R++DP  LMES+F  +++E RFPLNMNVLS G+VP VM L G+L+ WL HR+ VL RRS+
Sbjct: 312 RTVDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVLRAWLEHRKVVLVRRSN 371

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           FR+  I++R+E+L+G L AYLN+DE+I IIR ED+PKP ++ +F LT+NQ +AILN+RLR
Sbjct: 372 FRLDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPALIKKFKLTDNQAEAILNMRLR 431

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           SLRKLEE +I+ E   L AE++ + SL+ S  +QW ++A EI+EVK +F   T LG RRT
Sbjct: 432 SLRKLEEMEIRGEHKELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTALGARRT 491

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
            F +    +     +AMIEKEP+TVV S +GWIR++K H    + + FKEGD+ +  LHA
Sbjct: 492 KFSDAPAIEY-VPMEAMIEKEPVTVVCSKKGWIRTMKGHVGPDTEIKFKEGDAGRFLLHA 550

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            TTD++LL +TDG+ YTL    L  GRG+GE ++L+IDL+ + ++V  FV+    KL+V 
Sbjct: 551 ETTDKVLLFATDGRFYTLDVTKLPGGRGNGEPVRLMIDLDESHEVVELFVHQPGRKLIVA 610

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           S +GN FIV E E++A  R GK  L V+ +++      V G HVAV+G+NRKLLIF + +
Sbjct: 611 SHEGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQGTHVAVIGDNRKLLIFPVKE 670

Query: 678 IPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           + EM+RGKGVRLQ Y DGG++DV  F + EGLT  D +GR   R+  DL  W+G R   G
Sbjct: 671 VNEMTRGKGVRLQRYADGGLADVKTFNLKEGLTVYDKSGRQ--RNFPDLKDWVGARAQAG 728

Query: 738 SLVPKGF 744
            L PKGF
Sbjct: 729 RLPPKGF 735


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/734 (56%), Positives = 541/734 (73%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRVRARW
Sbjct: 193 AELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRARW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLIRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           TTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L  A  
Sbjct: 493 TTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGFAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     K LV
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + +  T+KGK  L V    + + V +V GD VAV+GENRK+L+F +D
Sbjct: 613 ASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAVIGENRKMLVFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           QIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W G R   
Sbjct: 673 QIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQGTRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L PKGFP+S KF
Sbjct: 733 GRLPPKGFPKSNKF 746


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/783 (50%), Positives = 527/783 (67%), Gaps = 38/783 (4%)

Query: 3   VDNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            D I + N   +     VS  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 2   SDTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 61

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 62  MRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L G++EDAVDFRD Y+   +EPVV P++FPNLLANG+
Sbjct: 122 IDGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGS 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGGIIVE  ESI 
Sbjct: 182 SGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESIA 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++P+L D
Sbjct: 242 QAYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILAD 301

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+D+R++L P+ +++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +
Sbjct: 302 VRDESADDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEV 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L HR+EVL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++  
Sbjct: 362 LRAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMRE 421

Query: 421 FS----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q +AILN+RLRSLR+LEE ++  E D L+AE+
Sbjct: 422 EWGIDHPRALNEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAER 481

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +I+ LL     QW +I+ +++E K+ F K    G RRT F E    ++  L +AMIE+E
Sbjct: 482 AEIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVPL-EAMIERE 540

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           PITVV S  GW+R++  H      L FK+GD  +   HA TTD++L+ +++G+ YT+ A 
Sbjct: 541 PITVVCSQMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAA 600

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL +  +IV   ++    KLLV S+ GN F+V E+E++A TR G
Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPERKLLVASTAGNGFVVPETEVVAQTRTG 660

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693
           K  L V  +E+  + V V GDHVAVV +N K L+F +D++PEM RGKGVRLQ Y      
Sbjct: 661 KQVLNVRDDERALICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGRGKGVRLQKYNMARGK 720

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DGG+SDV  F   EGL W  S G    R E DL  WL KR  VG   P GFPRS
Sbjct: 721 QGALELDGGLSDVTTFTWAEGLKW--SMGGDKTRHETDLSQWLAKRASVGKRPPYGFPRS 778

Query: 748 GKF 750
            KF
Sbjct: 779 YKF 781


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/772 (50%), Positives = 532/772 (68%), Gaps = 34/772 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+  N   L E      +LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM E
Sbjct: 6   DDPLNPQELTE------TLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 59

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L  G  F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 60  LRLASGGGFRKSAKIAGDVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 119

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTEARMT  AE +L G+DE+AVD+R  Y+    EPVV P+ FPNLLANG+SGI
Sbjct: 120 DSPAASRYTEARMTAAAEALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSSGI 179

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+  A L LI  P    + LL +I GPDFPTGG+IVE  E+I ++Y
Sbjct: 180 AVGMATNIPPHNLDEVISACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W +E++GRG W I+VTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 240 RTGRGAFRLRAKWEIEDLGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADVRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIV+ P+ R+++P++LM  +F  S++E RF +NMNVL  G  P+V  L  +L+ 
Sbjct: 300 ESADDVRIVIEPRVRTIEPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVLRA 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L HRREVL RR++ R++ ID R+E+L G + AYLN+D +I IIR ++ PK  + +    
Sbjct: 360 FLDHRREVLQRRTTHRLEKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAALQAEDWG 419

Query: 422 -----------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   LTE Q DAILN+RLRSLR+LEE ++ +E D L AE+
Sbjct: 420 LKIPRAADESRYVSPLGRPVAAGGLTEVQADAILNMRLRSLRRLEEIELVNERDALQAER 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             + +L+   K QW++I+ E+++V++ F K++  G RRT F E          +AMIE+E
Sbjct: 480 AGLHALMGDEKLQWSRISDELKDVRKQFGKTSKGGARRTAFGEGKEVA-DVPLEAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TV+ S+ GWIR++K H      + FK+GD  + A HA TTDR+L  +++G+ YT+ A 
Sbjct: 539 PVTVICSDMGWIRAMKGHIALDQEMKFKDGDKARFAFHAETTDRLLAFASNGRFYTVLAA 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L++DL ++  IV   ++    KL++ SS G+ FIV E ++IA TR G
Sbjct: 599 NLPGGRGTGEPLRLMVDLPNDAQIVDLLIHRPGQKLILASSAGDGFIVAEDDVIAQTRAG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  L +S      +V  V GDHVA VG+NRK+L+F++D++PEM+RGKGV+LQ +KDGG+S
Sbjct: 659 KQVLNLSEGASALIVKPVQGDHVACVGDNRKMLVFALDELPEMARGKGVKLQKFKDGGLS 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D++   + +GL+W +S GR   RSE DL  WLGKR G G + P+GFPR  +F
Sbjct: 719 DLVTLTLAQGLSWKESGGR--TRSEPDLSEWLGKRAGTGRMAPRGFPRDNRF 768


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/733 (56%), Positives = 556/733 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKK A+IV
Sbjct: 20  VNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKCAKIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT++
Sbjct: 80  GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTEI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+G+DEDA+DFR+ Y+ +  EP+V P+  PNLLANG  GIAVGMATSIP HN+ E+
Sbjct: 140 ARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHNLSEL 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AAL LI + + + ++LL ++ GPDFPTGGI+V+S ESI E+YR GRG FR+RARW  E
Sbjct: 200 CDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRARWERE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  RG++ IVVTEIPY VQKSRLIEK+AEL+  K++PL+ DIRDESAEDVRIV+ PK+R+
Sbjct: 260 EGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAEDVRIVIEPKSRA 319

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++P+LLMES+F L+++ETRFP+NMNVL  G VP+V+ LD  L++WL HRREVL RRS  R
Sbjct: 320 VEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRRSRHR 379

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +  I+RR+E+L G+LI +LN+DE+I IIR ED+PK V+ + F+L++ Q + IL+ RLRSL
Sbjct: 380 LAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKEVLKATFTLSDIQANYILDTRLRSL 439

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           R+LEE +++ E +NL  EK +I+ LL S  +QW +I+ +IR++K+ + ++T LGRRRTTF
Sbjct: 440 RRLEEMELRREYENLEKEKSEIEGLLASESKQWKEISSQIRDLKKRYGEATPLGRRRTTF 499

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             V       +  A+IE+EP+T+V+S +GWIR+LK H  DLS L FK  D L     A T
Sbjct: 500 GNVPDVGAVDVATALIEREPVTIVVSEKGWIRALKGHVADLSTLTFKGDDQLAFQFFAET 559

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           T +ILL ++DGK +TL A  L  GRGHGE ++L++DL   +++ +   Y++  KLL+ +S
Sbjct: 560 TSKILLFASDGKVFTLEASKLPGGRGHGEPLRLMVDLGEGEEVTSIIPYETGAKLLLTAS 619

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G  FIV + ++I  TRKGK  L   +  K+  +V   GDH+A++GENRKLLIF + QI 
Sbjct: 620 DGRGFIVGQDDLIGTTRKGKQVLNCDAPAKLSHIVPAAGDHLAIIGENRKLLIFPLVQIA 679

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           EM+RGKGVRLQ YKDGG+SD     I  GL+W D+AGRS++ ++ DL  W+G+RG  G L
Sbjct: 680 EMTRGKGVRLQKYKDGGVSDAKVIFIDAGLSWQDAAGRSFHLAKADLADWIGQRGEAGRL 739

Query: 740 VPKGFPRSGKFLS 752
            P+GFP++ +F  
Sbjct: 740 PPRGFPKNNRFTG 752


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/735 (56%), Positives = 538/735 (73%), Gaps = 1/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD   AFKK 
Sbjct: 13  GIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPNTAFKKC 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEAR
Sbjct: 73  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA L+L G+DEDAVDFR +YN E  EPVV P  FPNLLANG+ GIAVGMATSIP HN
Sbjct: 133 LTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQGIAVGMATSIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AAL LI +P  + E+L  ++ GPDFPTGGI+V+S E+I E+YR GRG FRVRAR
Sbjct: 193 AAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAEAYRTGRGAFRVRAR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E++GRG+W +VVTEIPY V K+RLIEK+AEL+  +++PLL D+RDESAEDVRIVL P
Sbjct: 253 WTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADVRDESAEDVRIVLEP 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++R++DP +LMES+F L+++E+RF LNMNVL  G+VP+V+ L   L+EWL HRR VL RR
Sbjct: 313 RSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEALREWLDHRRTVLQRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+  I++R+EIL GLLI YL++D++I IIR ED+PK  ++  F LTE Q +AIL+ R
Sbjct: 373 SRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRYFQLTEVQANAILDTR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE ++K E   L AEK  +D+LL S   QW  IA ++R VK+ F   T LGRR
Sbjct: 433 LRSLRKLEEMELKREQAALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGPETPLGRR 492

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT           L +AMIE+EPITV++S +GWIRSLK H  DLS + FK  D+LK++ 
Sbjct: 493 RTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRSLKGHVADLSGVQFKGDDALKLSF 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              TT ++L+L+++GK +TL A  L  GRG G+ I+L+ DL+   DIVT + Y +  KLL
Sbjct: 553 PTETTAKLLVLASNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGTDIVTVWPYRAGAKLL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
             +  G  F      ++ANTRKGK  + +     +   V+V  GDHVA  GENR L++F 
Sbjct: 613 FGTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGENRLLVVFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + +IPEM+RGKGVRLQ Y++  ++ +  FK+ EGLTW DSAGR+ +    +L  W+G RG
Sbjct: 673 LTEIPEMARGKGVRLQRYRESTLAYLTVFKLAEGLTWPDSAGRTRSVVGEELAKWVGHRG 732

Query: 735 GVGSLVPKGFPRSGK 749
            VG + P+GFPRS +
Sbjct: 733 TVGIMAPRGFPRSNR 747


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/736 (56%), Positives = 547/736 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  + FKK
Sbjct: 11  QDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGD+ AA RYTE+
Sbjct: 71  SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDNPAAMRYTES 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T VA L+L+G+DEDAV+FR TY+  D EPVV P  FPNLLANG  GIAVGMATSIP H
Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LID P      LL Y+ GPDFPTGGI+V+S++SI E+Y  GRGGFRVRA
Sbjct: 191 NAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAEAYATGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+RIV+ 
Sbjct: 251 KWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK++++DP++LME++F  +D+E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL R
Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLVR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+ILN+
Sbjct: 371 RSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIKTFKLTDIQADSILNM 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE +I+ E   L AE + + ++L S  +QW ++  ++++V+E+F   T LG+
Sbjct: 431 RLRNLRKLEEMEIRGEDKKLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKTALGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F +    D A +++A+IE+EPITVV+S++GW+R+LK H  DLS L FK  D L I+
Sbjct: 491 RRTQFADAPEHDLAAIEEALIEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV     K 
Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S  G  F+V E + + NTRKGK  L V++  +   +  V GD VAV+GENRK+LIF 
Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNEAAAICTVAGDTVAVIGENRKMLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   EGLTW DSAGR ++ +  +L  W G R 
Sbjct: 671 LDQVPEMARGRGVRLQRYKDGGLSDITTFTAKEGLTWKDSAGREFSATWKELSDWRGNRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 731 DAGRLPPKGFPKSNKF 746


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/736 (55%), Positives = 553/736 (75%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL+++ GPDFPTGG+I++SRESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAEAYSTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIP+ VQKSRLIEKIAEL+  K++PL+ D+RDESAED+R+V+ PK
Sbjct: 253 SQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+LLMES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F LT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMRTFKLTDIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S K+QW ++  ++R+V+++F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T+F +    D A +++A +E+EP+T+V+S++GW+R+LK H  DLS+L FK+ D L     
Sbjct: 493 TSFADAPEHDLAAIEEAFVEREPVTIVVSDKGWVRTLKGHVADLSSLAFKQDDKLGTTFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT +++L +T+G+ Y+L    L  GRGHGE I++ IDL+ +  IV+ FV     + LV
Sbjct: 553 AETTSKLMLFATNGRFYSLEVAKLPGGRGHGEPIRMFIDLDQDAAIVSLFVSTGDRRFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E++ ++NTRKGK  L V   +E +   VV    D VAV+GENRK+L+F 
Sbjct: 613 ASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM++G+GVRLQ YKDGG+SD++ F    GLTW DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMAKGRGVRLQKYKDGGLSDIVAFNAKAGLTWRDSAGREFSATIKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/736 (56%), Positives = 545/736 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V+ V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD  + FKK
Sbjct: 11  QDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTE+
Sbjct: 71  SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAMRYTES 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T VA L+L+G+DEDAV+FR +Y+  D EP V P  FPNLLANG  GIAVGMAT+IP H
Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQGIAVGMATAIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI  P    + LL Y+ GPDFPTGGI+V+ +ESI E+Y  GRG FRVRA
Sbjct: 191 NAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAEAYNTGRGAFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+  RG+W IVVTEIP+ VQKSRLIE+IAEL+  K++ L+ DIRDESAED+RIV+ 
Sbjct: 251 KWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK++++DP++LME++F  +D+E+R PLN+NVL  GRVP+V+ L   L+EWL H R+VL R
Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECLREWLDHLRDVLVR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS+ R   I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++  F LT+ Q D+ILN+
Sbjct: 371 RSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIRTFKLTDLQADSILNM 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE +I+ E  NL  E + I ++L S ++QW +++ ++++V+++F   T LG+
Sbjct: 431 RLRNLRKLEEMEIRGEDKNLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKTPLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT F      D ATL++A +E+EPITVV+S++GW+R+LK H  DLS L FK  D L I+
Sbjct: 491 RRTQFANAPEHDLATLEEAFVEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++LLL T G+ YTL A  L  GRGHG+ I+  IDL  + +IV+ FV     K 
Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S  G  F+V E + + NTRKGK  + V+   ++  +  V GD VAV+GENRK+LIF 
Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNEVAAIATVEGDTVAVIGENRKMLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           ++Q+PEM+RG+GVRLQ YKDGG+SDV  F   EGLTW DSAGR ++ S  +L  W G R 
Sbjct: 671 LEQVPEMARGRGVRLQRYKDGGLSDVTTFTAKEGLTWRDSAGREFSASWKELSDWRGNRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 731 DAGRLPPKGFPKSNKF 746


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/773 (50%), Positives = 533/773 (68%), Gaps = 32/773 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            +D +    T + E      LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 4   TIDPVDTPETEITE-----PLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 59  NRLRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L+G+ E+AVD+RD Y+    EPVV P+ FPNLLANG++
Sbjct: 119 DGDNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGST 178

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HNV E+C+A L LI +P    E LL+Y+ GPDFPTGG+IVE +E+I+E
Sbjct: 179 GIAVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILE 238

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R +W  E++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K+IP+L D+
Sbjct: 239 AYRTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDV 298

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+DVRI+L PK++++DPD+LM  ++  SD+E RF LNMNVL  G  P+V  L  +L
Sbjct: 299 RDESADDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + ++ HR++VL RRS  R+  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++   
Sbjct: 359 RAFIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMREN 418

Query: 422 S------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+E Q +AILN+RLRSLR+LEE ++  E D L+ E
Sbjct: 419 WAQEFVRATSESDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERDALMEE 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           +  +D LL+  + QW +I+ ++RE ++ F K+ + G RR+ F E    ++  + +AMIE+
Sbjct: 479 RANLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPI-EAMIER 537

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EPITVV S  GW+R+LK H+   S + FK+GD  +   HA TTDR+L+  ++G+ YTL A
Sbjct: 538 EPITVVCSKMGWVRALKGHADLTSKVKFKDGDEARFMFHAETTDRLLIFGSNGRFYTLGA 597

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            NL  GRG GE ++L++DL +  +IV   ++    KLLV S+ G+ FIV E+++IA TR 
Sbjct: 598 NNLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPDRKLLVASTAGDGFIVPENDVIAQTRS 657

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           GK  L V    +  ++  V GDH+A VGENRK+L F + ++PEM RGKGVRLQ YKDGG+
Sbjct: 658 GKQVLNVKEGVRAFVLSPVKGDHLACVGENRKVLAFPLTELPEMGRGKGVRLQKYKDGGL 717

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           SD   F + +GL+W D AGR   R+E +L  W+GKR   G + P+GFPR  +F
Sbjct: 718 SDATFFTLADGLSWKDPAGR--TRTETELTEWMGKRASAGRMAPRGFPRDNRF 768


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EP+V P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ PK
Sbjct: 253 AQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIRNED+PKPV++  FSLT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPVLMKTFSLTDIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDRLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FVY    K L+
Sbjct: 553 AETTSKLLLLATNGRFYSLDVAKLPGGRGHGEPIRMFIDMEQDAAIVAVFVYKGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  FIV E + +  TRKGK  + V   +E +   VV    D VAV+GENRK+LIF 
Sbjct: 613 ASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL+W DSAGR ++ +  DL  W G R 
Sbjct: 673 MDQVPEMTRGRGVRLQKYKDGGLSDIATFVSKQGLSWRDSAGREFSATMKDLAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/734 (56%), Positives = 540/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA
Sbjct: 13  IHDVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+ + + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITEAYMTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK
Sbjct: 253 NQEEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRNVDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN+RL
Sbjct: 373 AYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL AE + I+++L S  +QW ++A ++R V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS+L FK  D L  A  
Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVLSDKGWVRTLKGHVEDLSSLSFKTNDKLGFAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L ID+  +  IV+ FV     K L+
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDMEQDAAIVSLFVNTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  FIV E + +  TRKGK  L V    + K +V V GD VAV+G N K++IF +D
Sbjct: 613 ASHEGQGFIVNEDDCVGTTRKGKQVLNVEMPNEAKAIVTVAGDQVAVIGTNHKMVIFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR       DL  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYKDAGLSDVAVFDSKAGLTWKDSAGREQGLRWKDLSDWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L   G P+S +F
Sbjct: 733 GRLAH-GLPKSNRF 745


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/775 (50%), Positives = 536/775 (69%), Gaps = 33/775 (4%)

Query: 6   ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+  T  + + +  S  LR AL +RYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 3   MSDVTTPADPDSRNSSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L+    F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 63  LRLNSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGI
Sbjct: 123 DNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +Y
Sbjct: 183 AVGMATNIPPHNISELVDACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAY 242

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R G+GGFR+R RW  E++GRG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RD
Sbjct: 243 RTGKGGFRLRCRWETEDLGRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRD 302

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R+++ P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ 
Sbjct: 303 ESADDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRA 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------- 414
           +L HRREVL RRS++RM+ ID R+E+L+G ++A+LN+D +I IIR ++ PK         
Sbjct: 363 FLDHRREVLQRRSTYRMEKIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWG 422

Query: 415 --------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                         P   +  SL+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  
Sbjct: 423 KDHVRAMDEASYVPPAPSAENSLSEVQADAILNMRLRSLRRLEEIELLREQAALMEERSG 482

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQAMI 515
           ++ LL +   QW+ I  ++RE K+ F K       ++GRRRT+F E    ++  L +AMI
Sbjct: 483 LEDLLENEGTQWDTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMI 541

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++EPITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+
Sbjct: 542 DREPITVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTV 601

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A  L  GRG GE ++L++DL +   IV   ++ +  KLLV SS G+ FIV E +++A T
Sbjct: 602 SASTLPGGRGMGEPLRLMVDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQT 661

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
           R GK  L V  + K  +   VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDG
Sbjct: 662 RGGKQVLNVRGDAKAMICAPVTGDAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDG 721

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G+SD I F    GL+W D AGR   R+E DL  W GKR   G + P+GFPR  +F
Sbjct: 722 GMSDAITFSRENGLSWQDPAGR--TRTEADLTEWTGKRATAGRMAPRGFPRDNRF 774


>gi|332560122|ref|ZP_08414444.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
 gi|332277834|gb|EGJ23149.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N]
          Length = 767

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/769 (51%), Positives = 534/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRGGFR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGGFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +I IIR +  PK  +++    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 422 --------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E    ++  L +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/759 (34%), Positives = 423/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +K
Sbjct: 6   QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +R
Sbjct: 186 HQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+   G   I+VTE+PYQV K++LIE+IAEL+  K+I  + D+RDES      ++
Sbjct: 245 AKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ 
Sbjct: 305 IEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I +IR        +  +++RFSL+E Q  A
Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  +L+    ++  +L   ++    I  E+ E+KE F+   
Sbjct: 424 ILDMRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT    VS A +    + +I +E + + ++++G+I+          K     +  
Sbjct: 483 ----RRTEI--VSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +H  E D ++  L   T D +L  +  GK Y      +        G  I  L++L+ ++
Sbjct: 537 MHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDE 596

Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            I         +     L+  + +G A     S        G   + +   +++  V   
Sbjct: 597 WINAMIPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLT 656

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWID 713
            G  H+ +  +N  L+ F    +  M R   GV+  +  DG   +V+  +I E     + 
Sbjct: 657 DGKKHLIIGTKNGMLIRFPETDVRAMGRSATGVKAITLDDG--DEVVGMEILEDHHDVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +        +  RGG G        ++G  ++
Sbjct: 715 VTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 14/212 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
              ++    E   V  + +G  +           +  L A+H +EGD L           
Sbjct: 602 IPIESEFSDERYLVFATKQGIAKRSPLSAFAHIRNNGLIAIHLREGDELISVRLTDGKKH 661

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++ + +G     P  ++ +       ++  I L+   ++V   + +    +LVV+ KG 
Sbjct: 662 LIIGTKNGMLIRFPETDVRAMGRSATGVKA-ITLDDGDEVVGMEILEDHHDVLVVTKKGF 720

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQI 678
                 SE    +R GK     +  +K   VV VT     + V V+     L+  ++  I
Sbjct: 721 GKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVAVTTVVGNEDVMVITTGGVLIRIAVSDI 780

Query: 679 PEMSR-GKGVRLQSY--KDGGISDVICFKICE 707
               R  +GV+L     +DG        K+ E
Sbjct: 781 SRTGRIAQGVKLIRLSGEDGHECVATVAKVPE 812


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL ++ GPDFPTGGI+++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVR+V+ PK
Sbjct: 253 MQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LT+ Q +AILN+RL
Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  A  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLNFKQDDKLDRAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y+L    L  GRGHGE I++ ID+  +  IV  FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYSLEVAKLPGGRGHGEPIRMFIDMEQDAAIVAMFVHKGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E + +  TRKGK  + V   +E +   VV    D+VAV+G+NRK+LIF 
Sbjct: 613 ASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD++ F   EGL+W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMARGRGVRLQKYKDGGLSDIVTFVAKEGLSWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G + PKGFP+S KF
Sbjct: 733 DAGRMPPKGFPKSNKF 748


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/769 (50%), Positives = 532/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L HRR VL RRS  RM+ ID R+E+L GL++A+LN+D +I IIR +  PK  +++    
Sbjct: 361 FLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 422 --------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E    ++  L +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/769 (50%), Positives = 531/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LA+I +P I+ E L+  I GPDFPTGG+IVE +ESI+E Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILEGY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF +NMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS- 422
           +L HRREVL RRS  RM+ ID R+E+L GL++A+LN+D +I IIR +++PK  +++    
Sbjct: 361 FLDHRREVLIRRSEHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRALMAETWG 420

Query: 423 ---------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                LTE Q +AILN+RLRSLR+LEE ++ +E D L AE+  +
Sbjct: 421 RKFKRATSEKDYVGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             L+ S  +QW +I  ++ E++++F K T  G RRT F E    ++  L +AMIE+EPIT
Sbjct: 481 ADLVGSEPRQWERIGADLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    S + FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSKMGWIRAMKGHQPLGSEVKFKDGDGPRFMFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I    ++    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIADLIIWRPGEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +       +   + GDHVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKDGVTTAVCRPIRGDHVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F++  GL+W D AGR   R+E DL  W G R G G + P+GFPR  +F
Sbjct: 720 TFELARGLSWKDPAGR--TRTETDLAEWTGARAGAGKMAPRGFPRDNRF 766


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/769 (50%), Positives = 533/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +I IIR +  PK  +++    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWG 420

Query: 422 --------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RKFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E    ++  L +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/772 (51%), Positives = 533/772 (69%), Gaps = 29/772 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D I + N   + + +   L  A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 2   SDLIDDPNMGGDTSAEP--LSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+ L  G  F+KS++I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  ELRLSAGGRFRKSSKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEAR+T +AE +++G+ E+AVDFRD Y+   +EPVV P+  PNLLANG SG
Sbjct: 120 GDNPAASRYTEARLTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGASG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+C AAL LI  P+   E LL Y+ GPDFPTGG +VE R ++ E+
Sbjct: 180 IAVGMATNIPPHNIEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+RA+W  E++GRG W IVVTEIPYQVQKSRLIEKIAELI  KR+P+L DIR
Sbjct: 240 YRTGRGSFRLRAKWEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+D+R++L P+++++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESADDIRMILEPRSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRREVL RRS  RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK  +++   
Sbjct: 360 AFLDHRREVLLRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDW 419

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q +AILN+RLRSLR+LEE ++  E D L+ E+
Sbjct: 420 SVKRGRAASEADYVSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERDALMEER 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LL S   QW +I+ +IREV++ F   ++ G RRT   E    ++  L +AMIE+E
Sbjct: 480 AGLEDLLESEDLQWVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPL-EAMIERE 538

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           PITVV S  GW+R++K H      L FK+GD  + A HA TTDR+L+  T+G+ YT+ A 
Sbjct: 539 PITVVCSRMGWVRAMKGHIDLTQKLKFKDGDEGRFAFHAETTDRLLVFGTNGRFYTVSAS 598

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG GE ++L+ID  +  DIV   ++    KL+V SS G+ F+V E +++A TR G
Sbjct: 599 NLPGGRGMGEPLRLMIDFPNEADIVDILIHKPGRKLVVASSAGDGFLVSEDDVLAQTRSG 658

Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           K  L V  +    +   V GD VAVVGENRK+L+F ++ +PEM+RGKGVRLQ YKDGG+S
Sbjct: 659 KQVLNVRGDATALVCKPVQGDTVAVVGENRKVLVFPVEDLPEMARGKGVRLQKYKDGGLS 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DV  F + EGL+W D AGR   R +++L  W G+R G G + P+GFPR  KF
Sbjct: 719 DVTTFNLAEGLSWFDPAGR--RRVQSELAEWTGRRAGSGRMAPRGFPRDNKF 768


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/733 (55%), Positives = 541/733 (73%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V LR ALEERYL YALSTI +RA+PD RDG KPVHRRI++ M  + LD GA FKK A+
Sbjct: 21  TPVDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPFKKCAK 80

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEARMT
Sbjct: 81  IVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMT 140

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            VA  +L+G+DEDA+DF+  Y+ E+ EP+V PS  PN+LANG  GIAVGMATSIP HN+ 
Sbjct: 141 SVARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIPPHNLA 200

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+AAL LI +   + E+LL ++ GPDFPTGGIIV+ RE IVE+YR GRG FRVRARW 
Sbjct: 201 ELCDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRVRARWT 260

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            EE+ RG W  VVTEIPY VQKSRLIEK+AELI  +++PL+ D+RDESAEDVRIVL P++
Sbjct: 261 KEELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAEDVRIVLEPRS 320

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R++D  L+ME++F LS++ETRF +NMNVL  G  P+V+ LD  L++WL HRREVL RRS 
Sbjct: 321 RNIDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVLQRRSR 380

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            R+ AI RR+E L+G++I +LN+DE+I IIR ED  K  +   F LT+ QVD IL+ RLR
Sbjct: 381 HRLAAILRRIEQLEGMIIVFLNLDEVIRIIREEDDAKGELKKAFKLTDLQVDYILDTRLR 440

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           SLRKLEE +++ EL  L  E+  I++LL    +QW  IA ++RE+K+I+   T++G+RRT
Sbjct: 441 SLRKLEEMELRRELKELTDERADIEALLADDGRQWKTIAAQVRELKKIYGPQTEIGKRRT 500

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           TF +   A    L +AMIE+EPITVV+S +GWIR+LK H  DLS L FK  D L  +  A
Sbjct: 501 TFEDAPAAVDLDLAEAMIEREPITVVVSKKGWIRALKGHVQDLSTLQFKGDDELDTSFFA 560

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            TT +IL+L+T+GKAYTL A  L  GRGHGE I+L  D++ +  +     ++    LL+V
Sbjct: 561 QTTSKILVLATNGKAYTLDASKLPGGRGHGEPIRLFADIDEDASVARVLPHEPQASLLLV 620

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           +  G  F+V + +++++T+KG+  L V    ++K+V +  GDHVA++GENRKLL+F +++
Sbjct: 621 ADDGRGFVVAQDDLLSSTKKGRAVLNVEPPARLKVVTEAAGDHVAIIGENRKLLVFPLEE 680

Query: 678 IPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            P M+RGKGVR+Q YKDGG++D   F + +GLTW DS+GR +   + +L  W+G R   G
Sbjct: 681 APRMARGKGVRMQRYKDGGVADAKVFSLADGLTWTDSSGRVFTVEKLELKEWIGHRAEAG 740

Query: 738 SLVPKGFPRSGKF 750
            L P+GFPR+ +F
Sbjct: 741 RLPPRGFPRNNRF 753


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/769 (50%), Positives = 533/769 (69%), Gaps = 27/769 (3%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++     E     +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+T +AEL+++G+ E+AVDFR  Y+    EPVV P+ FPNLLANG SGI
Sbjct: 121 DNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ E  LALI +P I+ + L+  I GPDFPTGG+IVE +E I+E+Y
Sbjct: 181 AVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+RA+W  E++GRG+W IVVTEIPYQVQKS+LIE++AELI  K++P L D+RD
Sbjct: 241 RTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+DVRIVL P+ R++DP++LM  +F  SD+E RF LNMNVL  GR P+V  L  +L+ 
Sbjct: 301 ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           +L HRR+VL RRS  RM+ ID R+E+L GL++A+LN+D +I IIR +  PK  +++    
Sbjct: 361 FLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWE 420

Query: 422 --------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                                L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+  +
Sbjct: 421 RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADL 480

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++L+ S + QW++I  ++ E++++F K T  G RRT F E    ++  L +AMIE+EPIT
Sbjct: 481 EALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPIT 539

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V+ S  GWIR++K H    +   FK+GD  +   HA TTDR+LL+ ++G+ YTL   +L 
Sbjct: 540 VICSQMGWIRAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLP 599

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG GE ++L++DL +  +I   FV+    KLL+ SS G+ F+V   E++A TR GK  
Sbjct: 600 GGRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAV 659

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           L +    +  +   V GDHVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I
Sbjct: 660 LSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAI 719

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            F+I  GL+W D AGR   R+E +L  W   R G G + P+GFPR  +F
Sbjct: 720 TFEIARGLSWKDPAGR--TRTETELAEWTAARAGAGKMAPRGFPRDNRF 766


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/740 (52%), Positives = 518/740 (70%), Gaps = 9/740 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    L  AL  RYLAYALS I +RA+PD+RDG KPV RR+++AM EM L+   A +K
Sbjct: 14  DRIIDEPLSEALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAMREMRLNPENAARK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+G  HPHGDQ++YD+LVR+AQ F QRYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 74  CAKVVGEVMGGYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNIDGDNAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++T  A L+L G++EDAVDF+ TY+  D EPVV P+ FPNLLANG++GIAVGMATSIP H
Sbjct: 134 KLTAAATLLLDGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGSTGIAVGMATSIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ +A L L++NPE S E L+ ++ GPDFPTGG+IVE R+S+ E+Y  GRGG RVRA
Sbjct: 194 NAGELIDACLLLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAETYATGRGGVRVRA 253

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++G+G++ IVVTEIPYQV+K+ L+EK+AELI AK+ PLL D+RDESAEDVR+VL 
Sbjct: 254 RWTKEDLGKGTYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDVRDESAEDVRLVLE 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R+++ ++LMES+F LSD+ETRF +N+NVL     P VM L   LK +L HRREVL R
Sbjct: 314 PKSRNVEAEVLMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQALKAFLDHRREVLVR 373

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R+  R++ I+ R+ IL GL+IAYLN+DE+I I+R EDKPK  ++  FSL+E Q DAILN 
Sbjct: 374 RARHRLEKIEARLHILDGLMIAYLNLDEVIRIVRYEDKPKEKLIETFSLSEIQADAILNT 433

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L KLEE +I+ E   L  E++ I  +L S   QW  +   +R VK    K   L  
Sbjct: 434 RLRQLAKLEEMEIRREHAELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGK---LND 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+TF E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKEGD L+  
Sbjct: 491 RRSTFGEAPQVDAEAAIEAMIVREPITIILSERGWIRAAKGRIEDPSELKFKEGDKLQFL 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           + A TTD++L+ ++DG+ +TL    L   RGHGE ++L+IDL+    IV  F +    K 
Sbjct: 551 VPAETTDKLLIFASDGRFFTLGCDKLPGARGHGEPLRLMIDLDDKVGIVDVFPHKPGAKR 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKL 670
           L+ S +G  FI+ E E IA  R GK  L         E   + + VTGD +AVVG+N K+
Sbjct: 611 LLASKQGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKI 670

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F + ++PEM RGKGV+LQSY++GG+ D + F   EG  WID+AGR   R+ +    W 
Sbjct: 671 LVFPLAELPEMPRGKGVKLQSYREGGLRDALVFNAAEGAAWIDAAGR--TRAWDGWQEWA 728

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G+R G G L PKGFP + +F
Sbjct: 729 GRRAGAGKLAPKGFPATKRF 748


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/758 (33%), Positives = 421/758 (55%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +K
Sbjct: 6   QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +R
Sbjct: 186 HQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++
Sbjct: 245 AKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ 
Sbjct: 305 IEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  A
Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+   
Sbjct: 424 ILDMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                R T   V   ++    + +I  E I + ++++G+I+          K     +  
Sbjct: 483 -----RRTEIVVGAVEQ-LDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +H  E D ++  L   T D +L  +  GK Y      +        G  I  L++L+ ++
Sbjct: 537 MHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D    L+  + +G A     S        G   + +   +++  V    
Sbjct: 597 WINAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWIDS 714
           G  H+ +  +N  L+ F    +  M R   GV+  +  D    +V+  +I E     +  
Sbjct: 657 GQKHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDN--DEVVSMEILEDHHDVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + +        +  RGG G        R+G  ++
Sbjct: 715 TKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             +      A +     + E   V  + +G  +           +  L A+H +EGD L 
Sbjct: 591 ELDKDEWINAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ + +G     P  ++ +       ++  I L+ N ++V+  + +   
Sbjct: 651 SVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGVKA-ITLDDNDEVVSMEILEDHH 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENR 668
            +LVV+ KG       SE    +R GK     +  E+   VV VT     + + V+  + 
Sbjct: 710 DVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVAVTTVVGNEDLMVITTSG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY 692
            L+  S+  I    R  +GV+L   
Sbjct: 770 VLIRISVSDISRTGRVAQGVKLIRL 794


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/758 (33%), Positives = 421/758 (55%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +K
Sbjct: 6   QPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A LAL  NPE+++  L+EYI GPDFPT G I+  R  I ++Y  GRG   +R
Sbjct: 186 HQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+   G   I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++
Sbjct: 245 AKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L+ +L H++ V+ 
Sbjct: 305 IEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I +IR        +  ++ RFSL+E Q  A
Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  +++    ++ ++L   ++    I  E+ E+KE F+   
Sbjct: 424 ILDMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                R T   V   ++    + +I  E I + ++++G+I+          K     +  
Sbjct: 483 -----RRTEIVVGAVEQ-LDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +H  E D ++  L   T D +L  +  GK Y      +        G  I  L++L+ ++
Sbjct: 537 MHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D    L+  + +G A     S        G   + +   +++  V    
Sbjct: 597 WINAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWIDS 714
           G  H+ +  +N  L+ F    +  M R   GV+  +  D    +V+  +I E     +  
Sbjct: 657 GQKHLIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDN--DEVVSMEILEDHHDVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + +        +  RGG G        R+G  ++
Sbjct: 715 TKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             +      A +     + E   V  + +G  +           +  L A+H +EGD L 
Sbjct: 591 ELDKDEWINAMIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ + +G     P  ++ +       ++  I L+ N ++V+  + +   
Sbjct: 651 SVRLTDGQKHLIIGTKNGMLIRFPETDVRTMGRSATGVKA-ITLDDNDEVVSMEILEDHH 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENR 668
            +LVV+ KG       SE    +R GK     +  E+   VV VT     + + V+  + 
Sbjct: 710 DVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVAVTTVVGNEDLMVITTSG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY 692
            L+  S+  I    R  +GV+L   
Sbjct: 770 VLIRISVSDISRTGRVAQGVKLIRL 794


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/759 (50%), Positives = 536/759 (70%), Gaps = 17/759 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+ + ++    E      L  A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ A
Sbjct: 16  MSSDDETPTSATHAE-----PLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFA 70

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGN+GN
Sbjct: 71  MRELKLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGN 130

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+   AE +L+G+ ED+VDFR  Y+   +EPVV P+ FPNLLANG 
Sbjct: 131 IDGDGPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGA 190

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++P HN+ E+ +  LA+I +P I   +L++ I GPDFPTGG+IVE + +I+
Sbjct: 191 SGIAVGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANIL 250

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG FR+RARW +E++GRG W IVVTEIPYQVQK++LIE++AELI  K++P L D
Sbjct: 251 EAYRTGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALAD 310

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVRIVL P+ R+++P  LM  +F  S++E RF LNMNVL  GRVP+V  L  +
Sbjct: 311 VRDESAEDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEV 370

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L HRREVL RRS  R++ I  R+E+L+G +IA+LN+D +I IIR ED PK  +++ 
Sbjct: 371 LRAFLDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAALMAE 430

Query: 421 FS---------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      LTE Q +AILN+RLRSLR+LEE ++++E D+LL E+  +++LL S   Q
Sbjct: 431 NWAAEAGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDDLLKERAGLEALLASEVAQ 490

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           W QI+ E+ ++++ + K+T +G RRT F E    ++  + +AMIE+EPITV++S  GW+R
Sbjct: 491 WAQISSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPI-EAMIEREPITVILSKMGWVR 549

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++K H    + + FK+GD    ALHA TTDRI+L+ ++G+A+TL   NL  GRG GE ++
Sbjct: 550 AMKGHQPLDAEVKFKDGDGQAFALHAETTDRIVLMGSNGRAWTLLGANLPGGRGMGEPVR 609

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L++++ +  ++    V     K L+ SS+G+ FI    E+IA+TR GK  L +S   + +
Sbjct: 610 LMLEMPNEVEVTHVLVPKPGEKYLLASSEGDGFIAPAEELIASTRTGKQVLNMSDGVRTR 669

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711
           +    +GD VA VGENRKLL+F ++++PEM+RGKGVRLQ +KDGG+SD I F++ EGL+W
Sbjct: 670 VCRVASGDAVACVGENRKLLVFPLEELPEMARGKGVRLQKFKDGGLSDAITFRLAEGLSW 729

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            D AGR   R+E DL  WLGKR   G + P+GFPR  +F
Sbjct: 730 KDPAGR--TRTEADLSEWLGKRASAGRMAPRGFPRDNRF 766


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/767 (33%), Positives = 425/767 (55%), Gaps = 34/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT    V+   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +        G  +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG   +V+  +I 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDG--DEVVGMEIL 706

Query: 707 E-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E G   +      Y +        +  RGG G        ++G  ++
Sbjct: 707 EDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVIS-NRGWIRSLKSHSV------DLSALHFKEGDSL 551
             +        +       + + +  +  +G  +     S        L A+H +EGD L
Sbjct: 591 ELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDEL 650

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A     +  I++ + +G     P  ++ +       ++  I L    ++V   + +  
Sbjct: 651 ISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKA-ITLEDGDEVVGMEILEDG 709

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
           C +LVV+  G       SE    +R GK     +  EK   +  V  VTG + + ++  +
Sbjct: 710 CDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVAVKTVTGEEDLMLITAS 769

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  ++  I  M R  +GV+L    D    + + 
Sbjct: 770 GILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVA 805


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/767 (33%), Positives = 423/767 (55%), Gaps = 34/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQNP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSA IVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  +  +++ +++  + ++T F +NM  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQ-PKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+        R T   +   +     + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE------RRTEIVIGGIE-EFDDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +        G  I  
Sbjct: 529 RGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V    G  H+ V  +N  L+ F    +  M R   GV+  + +DG   +V+  +I 
Sbjct: 649 ELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDG--DEVVGMEIL 706

Query: 707 EGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E     +      Y +        +  RGG G        ++G  ++
Sbjct: 707 EDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G  +     S        L A+H +EGD L        +  I++ + +G     
Sbjct: 615 FFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRF 674

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P  ++ +       ++  I L    ++V   + +  C +LVV+  G       SE    +
Sbjct: 675 PETDVRTMGRSATGVKA-ITLEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQS 733

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK     +  EK   +  V  VTG + + ++     L+  ++  I  M R  +GV+L 
Sbjct: 734 RGGKGLKTCNITEKNGSVVAVKTVTGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLI 793

Query: 691 SYKDGGISDVIC 702
              D    + + 
Sbjct: 794 RLSDDDEHEYVA 805


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/777 (49%), Positives = 535/777 (68%), Gaps = 36/777 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D +       E      +LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 35  MNDDALDPKMNPTE------TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 88

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 89  MRELKLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 148

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+
Sbjct: 149 IDGDNPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGS 208

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN++E+  A L LI +P    E LL+YI GPDFPTGG+IVE +E+I 
Sbjct: 209 SGIAVGMATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIA 268

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR G+GGFR+R ++ VE++GRG W +++TEIPYQVQKSRLIEK+AE+I  K++P+L D
Sbjct: 269 EAYRTGKGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILAD 328

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAED+RIVL PK++++D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +
Sbjct: 329 VRDESAEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEV 388

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           L+ +L HRR+VL RRS+ RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  +++ 
Sbjct: 389 LRAFLDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAE 448

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LT+ Q +AILN+RLRSLR+LEE ++  E D 
Sbjct: 449 DWGKTHARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDA 508

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+ E+  ++ LL+S   QW  IA ++RE +++F  +++ G RRT F  V+   +    +A
Sbjct: 509 LMLERAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFA-VAGVVEDVPLEA 567

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           MI+KEP+TVV S  GWIR+L  H      L FK+GD  +   HA TTDR+L+  ++G+ Y
Sbjct: 568 MIDKEPVTVVCSKMGWIRALTGHIDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFY 627

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           T+    L  GRG GE ++L++DL +  +IV  F++ +  KLLV SS G+ F+V E ++IA
Sbjct: 628 TMGTSTLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNKLLVASSAGDGFVVPEDDVIA 687

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
            TR GK  L V  + + ++   VTGD+VA VGENRK+L+F +D++PEM RGKGVRLQ YK
Sbjct: 688 QTRAGKQVLNVKGDVRARVCSTVTGDYVACVGENRKVLLFPLDELPEMGRGKGVRLQKYK 747

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DGG+SD   F + +GL+W+D AGR   R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 748 DGGLSDATTFTLADGLSWLDPAGR--TRTQTELAEWAAKRAGAGRMAPRGFPRDNRF 802


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/736 (57%), Positives = 542/736 (73%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 AQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEALREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 NHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++IK E  +L AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIKKEDKDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF 
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SDV  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDVATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/767 (33%), Positives = 424/767 (55%), Gaps = 34/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +       ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G
Sbjct: 1   MSENQHP---RIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+
Sbjct: 58  MTADKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D +D++D Y+  + EPVV PS+FPNLL NG+SGIAV
Sbjct: 118 AAAMRYTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +A LAL  NP++++  L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+V E+PYQV K++LIE+IAEL+  K+I  + D+RDES
Sbjct: 237 GRGSITLRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +  +++ +++  + M+T F +NM  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRSGMRIVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA   +DE+I +IR+       +  ++ +FS
Sbjct: 356 DHQKTVIRRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+
Sbjct: 416 LSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       RRT    V+   +    + +I +E I + ++++G+I+          K
Sbjct: 476 KERFNDE-----RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +H  E D ++  L   T D +L  +  GK Y      +        G  +  
Sbjct: 529 RGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTAKGIPLIN 588

Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L+ ++ I T       +D    L   + +G A     S        G   + +   +
Sbjct: 589 LLELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGD 648

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++       G  H+ V  +N  L+ F    +  M R   GV+  + +DG   +V+  +I 
Sbjct: 649 ELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKAITLEDG--DEVVGMEIL 706

Query: 707 E-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E G   +      Y +        +  RGG G        ++G  ++
Sbjct: 707 EDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVIS-NRGWIRSLKSHSV------DLSALHFKEGDSL 551
             +        +       + + +  +  +G  +     S        L A+H +EGD L
Sbjct: 591 ELDKDEWINTIIPIDNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDEL 650

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A     +  I++ + +G     P  ++ +       ++  I L    ++V   + +  
Sbjct: 651 ISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMGRSATGVKA-ITLEDGDEVVGMEILEDG 709

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
           C +LVV+  G       SE    +R GK     +  EK   +  V  VTG + + ++  +
Sbjct: 710 CDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVAVKTVTGEEDLMLITAS 769

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  ++  I  M R  +GV+L    D    + + 
Sbjct: 770 GILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVA 805


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/734 (56%), Positives = 538/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA
Sbjct: 13  IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+     LL+++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAEAYATGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W IVVTEIP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK
Sbjct: 253 HREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R  LN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNIDE+I IIR ED+PKP ++  F LTE Q +AILN+RL
Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPALIKAFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  +L AE + I+++L S  +QW ++  ++R V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV+    K L+
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + ++ TRKGK  L V    + K +  V GD VAV+G N K+++F +D
Sbjct: 613 ASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEAKAITTVAGDQVAVIGTNHKMVVFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ YKD G+SDV  F    GLTW DSAGR  + S  DL  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYKDAGLSDVAVFNSKIGLTWKDSAGREQSLSWKDLSDWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L   G P+S KF
Sbjct: 733 GRLAH-GLPKSNKF 745


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/750 (52%), Positives = 543/750 (72%), Gaps = 5/750 (0%)

Query: 3   VDNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           + N+ N N   +     +S  LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MANLINKNNEDDGGGSTLSEPLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYP++ GQGNFGN
Sbjct: 61  MYRLKLVSNGKFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L G++E+AVDF+D Y+   +EP V P+ FPNLLANG+
Sbjct: 121 IDGDNPAAARYTEARMTAVAEAMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A++ LI  P    E LL+++ GPDFPTGGI+VE R+S++
Sbjct: 181 TGIAVGMATNIPPHNIGELLDASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLL 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  R+R++W +E++ RG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D
Sbjct: 241 ETYRTGRGPMRLRSKWEIEDLPRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILAD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAED+R+VL P+ +++DP +LME++F +SD+E RF LN+N L  GR P+V  +  +
Sbjct: 301 VRDESAEDIRLVLEPRAKTVDPTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKEV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ ++ H+R+VL RRS  RM  ID R+E+L+G ++A+LN+D +I IIRNED+PK +M+  
Sbjct: 361 LRAFIDHKRDVLLRRSKHRMDKIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKKIMMKE 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSL++ QV+AILN+RLRSLRKLEE ++++ELD+L  E+  +D LL S K QW +I  E+R
Sbjct: 421 FSLSDVQVEAILNMRLRSLRKLEEIELRTELDSLQLERADLDDLLASEKMQWERIINELR 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E +++F K++D G RRT   E    ++  + +AMIEKEPITVV S+ GW+R++K H    
Sbjct: 481 ETRKVFGKNSDSGNRRTELAEAPDFEEVPI-EAMIEKEPITVVCSSMGWLRAMKGHVDLS 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L +K+GD  +   HA TTD++L+   +G+ YT+    L  GRG GE I+L++DL ++ 
Sbjct: 540 QELKYKDGDEKRFVFHAETTDKLLMFGGNGRFYTMSCSELPGGRGMGEPIRLIVDLPNDA 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           ++V  F++    KLL+ SS G+ F+VEE++I+A TR GK  L V  +    +   V GD+
Sbjct: 600 NMVDLFIHQPDRKLLLASSAGDGFVVEENDIVAQTRTGKQALNVKGDITALICKPVVGDY 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA VG+NRK+LIF ID++P MSRGKGVR+Q YKDGG++D   F   +GL+W+D AGR   
Sbjct: 660 VATVGQNRKVLIFPIDELPVMSRGKGVRMQKYKDGGLNDATTFHFIDGLSWLDPAGR--R 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R E +L  W+GKR G G + P+GFPR  KF
Sbjct: 718 RIETELADWIGKRAGAGRMAPRGFPRENKF 747


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D VAV+G+NRK++IF 
Sbjct: 613 ASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G  FKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQS+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DED V FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+   + LL ++ GPDFPTGGII++S+ESI E+Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +VVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAEDVRIV+ PK
Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +RS+DP L+MES+F L+++E+R PLN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +R   I+ R+E+L G LIAYLNID++I IIR ED+PKPV++  F+LTE Q +AILN+RL
Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE++I++E  NL AE + I+++L S  +QW ++  ++R+V+E+F   T LG+RR
Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A +E+EP+TVVIS++GW+R+LK H  DLS L+FK+ D L  +  
Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LLL+T+G+ Y L    L  GRGHGE I++ ID+  +  IVT FV+    K L+
Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
            S  G  F+V E E + +TRKGK  L V   +E +   VV    D +AV+G+NRK++IF 
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIFP 672

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+PEM+RG+GVRLQ YKDGG+SD+  F   +GL W DSAGR ++ +  +L  W G R 
Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732

Query: 735 GVGSLVPKGFPRSGKF 750
             G L PKGFP+S KF
Sbjct: 733 DAGRLPPKGFPKSNKF 748


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/747 (53%), Positives = 538/747 (72%), Gaps = 6/747 (0%)

Query: 6   ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +  T + E   V+   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM +
Sbjct: 1   MPDDLTTLPEGGEVRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAMHQ 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + LD  A FKK ARIVG+V+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLDPAAGFKKCARIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEAR+T++A+ +L+G++E+AVDFR TY+ E+ EP+V P+ FPNLLANG +GI
Sbjct: 121 DNAAAMRYTEARLTEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP HN  E+C AAL LIDNP+  +++LL  + GPDFPTGG++VES E+I E+Y
Sbjct: 181 AVGMATSIPPHNAGELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIREAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGGFR+RARW  E++  G+W I+VTEIPYQV KSRLIE+IA+L+  K++PLL D+RD
Sbjct: 241 ATGRGGFRIRARWAEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES + VRIVL PK+R+++P +LME++F  + +E RFPLNMNVL   R P+VM L  +L+ 
Sbjct: 301 ESTDVVRIVLEPKSRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVLRC 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL HR  VL RRS  R+ AI RR+EIL+G LI YLN+DE+I IIR ED PKP +++RF+L
Sbjct: 361 WLDHRHVVLVRRSEHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPALMARFAL 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q +AILN+RLRSLRKLEE +I+ E   L AE++ + +LL S  ++W +IA EI   +
Sbjct: 421 TETQAEAILNMRLRSLRKLEEMEIRKEHKKLSAEQKSLQALLGSEGKRWKRIAEEIAATR 480

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F + T+LGRRR+T  + + A     ++A +E+E ITV++S +GWIR++K H    +  
Sbjct: 481 ARFGEETELGRRRSTL-DAAPAAVVIDERAFVEREMITVILSEKGWIRAVKGHLPPETEH 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD L+ ALHA TTDRI L +T+GK +TL A  +  GRG G+ ++L++DL +  ++V
Sbjct: 540 KFKEGDRLRAALHAETTDRICLFATNGKCFTLKADAIPRGRGDGQPVRLMVDLTNEDEVV 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           + FV+    K LV +S G  F+V+  ++ A  R GK  L V S  +   ++   GD VA+
Sbjct: 600 SLFVWRPERKFLVAASDGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAARLIPAEGDTVAI 659

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           +GENRKLL+F ++Q+PEM RG+GV LQ YKDGG++DV  F   EGLTW         R E
Sbjct: 660 IGENRKLLVFPLEQVPEMVRGRGVTLQGYKDGGMADVKVFSAREGLTWKIGE---RVRME 716

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DL  W G R G G   P GFP++ +F
Sbjct: 717 TDLTTWRGNRAGAGRQPPNGFPKTNRF 743


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/736 (54%), Positives = 537/736 (72%), Gaps = 1/736 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V LR ALEERYL YALSTI  RA+PD RDG KPVHRRI++ M  + L   A FKK
Sbjct: 15  EALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYGMQTLRLAPDAPFKK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRLAQ F  RYPL+ GQGNFGN+DGD+AAAYRYTEA
Sbjct: 75  CAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDAAAAYRYTEA 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT VA L+L+G+DEDA+DFR  Y+ E+ EPVV P+  PNLLANG  GIAVGMATS+P H
Sbjct: 135 RMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGAQGIAVGMATSVPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+AAL LI + E + E+L+ ++ GPDFPTGG++V+ R  IVE+YR GRG FR+RA
Sbjct: 195 NLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIVETYRTGRGSFRLRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  EE  RG W  VVTEIPY VQKSRLIEK+AELI+ K+ PL  D+RDESAEDVR+V+ 
Sbjct: 255 RWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGDVRDESAEDVRVVIE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+ R++DP L+ME++F LS++E RFP+NMNVL  G VP+V+ LD  L++WL HRREVL R
Sbjct: 315 PRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEALRQWLDHRREVLER 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS  R+ AI RR+E+L G++I +LN+DE+I IIR ED+PK  + S F LT+ QVD IL+ 
Sbjct: 375 RSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQALKSAFDLTDVQVDYILDT 434

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LR+LEE +++ E + L+ E+ +I+ LL    +QW  I  +IRE+K+       L +
Sbjct: 435 RLRALRRLEEMELRKEREKLIEERAEIEGLLAEEAKQWKAITAQIRELKKTVGDP-RLAK 493

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTTF +   A    L +A+IE+EPITVV+S +GWIR+LK H  DLS L FK  D+L  +
Sbjct: 494 RRTTFEDAPEATDIDLAEALIEREPITVVVSQKGWIRALKGHVSDLSQLQFKGDDALDFS 553

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             A TT ++L L+++GKA+TL A  L  GRGHGE I+L+ +++ +  IV  F++     L
Sbjct: 554 FFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDAAIVKVFLHTPDALL 613

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+VS  G  F+V +++++A TRKG+    V    K+K+V    GDHVA++GENRKLL+F 
Sbjct: 614 LLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAPAEGDHVAIIGENRKLLVFP 673

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + + P+M+RGKGVRLQ YKDGG++D   F + +GLTW D++ R +   + +L  W+  R 
Sbjct: 674 LSEAPQMARGKGVRLQRYKDGGVADAKVFALADGLTWTDTSARVHTVDKRELAEWVAHRA 733

Query: 735 GVGSLVPKGFPRSGKF 750
             G L P+GFP++ +F
Sbjct: 734 EAGRLPPRGFPKNNRF 749


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/763 (51%), Positives = 513/763 (67%), Gaps = 36/763 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G
Sbjct: 22  PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISG 81

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VA
Sbjct: 82  DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVA 141

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+G+DEDAVDFRD Y+    EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+C
Sbjct: 142 EALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANGASGIAVGMATNIPPHNIAELC 201

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A L LI  P+   + LL Y+ GPDFPTGG+IVE  ESI ++YR GRG FR+R ++ +E+
Sbjct: 202 DACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESIAQAYRTGRGSFRLRCKYEIED 261

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPYQVQKS+LIEK+AELI  K+IP+L D+RDESA+D+R++L P+++++
Sbjct: 262 LGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILGDVRDESADDIRLILEPRSKNV 321

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HR+EVL RRS  RM
Sbjct: 322 DPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRHRM 381

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------------ 422
             ID R+E+L+G ++A+LN+D +I IIR +D PK  ++                      
Sbjct: 382 AKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRENWGIDHVRATSEADYVSPKP 441

Query: 423 ----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+  ++ LL     QW  IA +
Sbjct: 442 GEGELSEVQVDAILNMRLRSLRRLEEMELVRERDALMEERAGLEDLLADEGLQWASIAEQ 501

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++E K+ F K  + G RRT F E    ++  L +AMI++EPITVV S  GWIR++  H  
Sbjct: 502 LKETKKKFGKDYEGGARRTRFAEAGAVEEVPL-EAMIDREPITVVCSQMGWIRAMTGHID 560

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               L FK+GD  +   HA TTDR+L+ +++G+ YT+ A NL  GRG GE ++L++DL +
Sbjct: 561 LNRELKFKDGDGPRFIFHAETTDRLLIFASNGRVYTVSAANLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              IV   ++    KLLV S  GN FIV E E++A TR GK  L V  +E+  +   V G
Sbjct: 621 EAQIVDILIHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKPVAG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV +N K L+F + ++PEM+RGKGVRLQ Y            DGG+SD+  F   E
Sbjct: 681 DHVAVVSQNGKFLVFPVSELPEMTRGKGVRLQKYNMARGRQGTLELDGGLSDLTTFNWEE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W  S G    R E D+  WL KR  VG   P GFPR  KF
Sbjct: 741 GLKW--SMGGDKTRHEPDMTPWLAKRASVGKKPPYGFPRDYKF 781


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVK+ 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKDR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/781 (50%), Positives = 527/781 (67%), Gaps = 37/781 (4%)

Query: 4   DNISNSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           D I + +++  ++ + +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 3   DLIDDPDSVKPQDGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 62

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 63  RLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 122

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+ EDAVDFRD Y+   +EP V P+ FPN+LANG +G
Sbjct: 123 GDNPAASRYTEARMTFVAEAMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANGAAG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++
Sbjct: 183 IAVGMATNIPPHNIAELIDACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+RA+  VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 243 YSTGRGSFRLRAKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RI+L PK++++DPD+LM  +F  SD+ETRF LNMNVL  G  P+V  +  +L+
Sbjct: 303 DESAEDIRIILEPKSKNVDPDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMKEVLR 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++    
Sbjct: 363 AFLDHRRDVLQRRSRHRMAKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREDW 422

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  
Sbjct: 423 GQDHPRAFSEAEYVSPAKGTGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAG 482

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S + QW +I  ++RE K+ F K  + G RRT F E    ++  L +AMI+KEPI
Sbjct: 483 LVELLGSEELQWTRITEQLRETKKQFGKDYEGGARRTLFAEAGEVEEVPL-EAMIDKEPI 541

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GW+R++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL
Sbjct: 542 TVVCSQMGWVRAMTGHIDLSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANL 601

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV   +++   +LLV S  GN FI  E EI+A TR GK 
Sbjct: 602 PGGRGMGEPVRLMVDLPNEAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQ 661

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +++ K+ + V GDHVAVV EN K L+FS++++PE+SRGKGVRLQ Y        
Sbjct: 662 VLNVKDDDRAKICIPVQGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQG 721

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SDV  F   +GLTW    G+   R E DL  WLGKR GVG   P GFPR+ K
Sbjct: 722 SLELDGGLSDVTTFNWDDGLTWEMGGGK--TRHETDLGQWLGKRAGVGKRPPYGFPRNYK 779

Query: 750 F 750
           F
Sbjct: 780 F 780


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 805


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + A   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-AIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D L  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 481 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 533

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 534 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 593

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 594 VDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVIS 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 654 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 711

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 712 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 594 VDKGEWINAIIPIREFGDDQFLFFTTKQGVSKRTPLSSFANIRTNGLIAISLREEDEVIS 653

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 654 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 712

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 713 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 772

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 773 IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVA 806


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/734 (55%), Positives = 536/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G+AFKKSA
Sbjct: 13  IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L G+DEDAV+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMAT+IP HN 
Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LID P+   + LL+++ GPDFPTGGII++S+ESI ++Y  GRG FR RA+W
Sbjct: 193 AELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIADAYTTGRGAFRTRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+  RG+W IVVT+IP+ VQKSRLIEKIAEL+  K++PL+ DIRDESAED+R+V+ PK
Sbjct: 253 HREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDIRDESAEDIRVVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP+L+MES+F L+++E+R  LN+NVL  GR+P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q DAILN+RL
Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALIKAFKLTEVQADAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL AE + I+++L S  +QW ++  ++R V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A L+++++E+EP+TVV+S++GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFL 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL  +  IV+ FV     K L+
Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVNTGGRKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            S +G  F+V E + +  TRKGK  L V    + K +  V GD VAV+G N K++IF +D
Sbjct: 613 ASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTNHKMVIFPLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y+D G+SDV  F    GLTW DSAGR    S  DL  W G R   
Sbjct: 673 QVPEMARGRGVRLQKYRDAGLSDVAVFDSKTGLTWRDSAGREQGLSWKDLSDWRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G L   G P+S KF
Sbjct: 733 GRLAH-GLPKSNKF 745


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E  T
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDT 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/763 (33%), Positives = 423/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EPVV P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + A   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-AIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D L  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 420/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR     D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D L  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDELIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGI 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/782 (50%), Positives = 524/782 (67%), Gaps = 38/782 (4%)

Query: 4   DNISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           D I + N    +N   +   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 3   DTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 63  RELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT VAE +L+G++EDAVDFRD Y+   +EPVV P++FPNLLANG+S
Sbjct: 123 DGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+C+A L LI  P+   + LL Y+ GPDFPTGG+IVE  E+I +
Sbjct: 183 GIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENIAQ 242

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K+IP+L D+
Sbjct: 243 AYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 302

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESA+D+R++L P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 303 RDESADDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L HR+EVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK  ++   
Sbjct: 363 RAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRED 422

Query: 422 S----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E QVDAILN+RLRSLR+LEE ++  E D L+ E+ 
Sbjct: 423 WGIDHVRATSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDELMLERA 482

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            ++ LL     QW +IA ++RE K+ F K  + G RRT F E  + ++  L +AMI++EP
Sbjct: 483 NLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQVEEVPL-EAMIDREP 541

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+ +++G+ YT+ A N
Sbjct: 542 ITVVCSQMGWIRAMTGHIDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAAN 601

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +   I+   ++    KLLV S  GN F+V E +++A TR GK
Sbjct: 602 LPGGRGMGEPLRLMVDLPNEAQIIDILIHKPGRKLLVASDAGNGFMVPEDDVLAQTRNGK 661

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------ 693
             L V   E   +   V GDHVAVV +N K L+F  +++PEM+RGKGVRLQ Y       
Sbjct: 662 QVLNVKGGETAMICKPVDGDHVAVVSQNGKFLVFPTNELPEMTRGKGVRLQKYNMARGRQ 721

Query: 694 -----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                DGG+SD+  F   EGL W  S G    R E D+  WL KR GVG   P GFPR  
Sbjct: 722 GTLELDGGLSDITTFNWEEGLKW--SMGGDKTRHEADMTQWLAKRAGVGKKAPYGFPRDY 779

Query: 749 KF 750
           KF
Sbjct: 780 KF 781


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/734 (54%), Positives = 539/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+ AAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIP+ VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ PK
Sbjct: 253 KQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+RL
Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+ LL S   QW ++  +++ V+++F   T LG+RR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  +  
Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQSFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A  T ++LL +T+GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K LV
Sbjct: 553 AENTSKVLLFATNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVTKGERKFLV 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+V+E + ++NTRKGK  L V++  + + +  VTGD VAV+G N K+++F +D
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTGDQVAVIGTNHKMVVFGLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R   
Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G +  +G P+S KF
Sbjct: 733 GRIA-QGLPKSNKF 745


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/754 (52%), Positives = 520/754 (68%), Gaps = 27/754 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L  A+  RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G
Sbjct: 24  PLSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAKISG 83

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ FV RYPL+ GQGNFGNIDGD+ AA RYTEARMT VA
Sbjct: 84  DVMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMTAVA 143

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+G+ EDAV+FRD Y+    EP V P++ PNLLANG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 144 EALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLDELI 203

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A L LI  P+   E LL Y+ GPDFPTGG+IVE RES+ E+YR G+GGFRVRA   +E+
Sbjct: 204 AACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHEIED 263

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPYQVQKS+LIEK+AELI  K++P+L D+RDESA+D+RIVL P+++++
Sbjct: 264 LGRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESADDIRIVLEPRSKTV 323

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DPD+LM +++  SD+E RF LNMNVL  GR P+V  L  +L+ +L HR++VL RRS  RM
Sbjct: 324 DPDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRSRHRM 383

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------------ 422
             ID R+E+L+G LIA+LN+D +I IIR +D PK  ++                      
Sbjct: 384 AQIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAALMREDWGQDFVRAMSEADYVSPKP 443

Query: 423 ----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LTE QV+AILN+RLRSLR+LEE ++++E D L+ E+  ++ LL     QW +IA E
Sbjct: 444 GEGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAEESLQWGRIAEE 503

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +REV++ F    D G RRT F E    +     +AMIE+EP+T+V S  GWIR++K H  
Sbjct: 504 LREVRKKFGSRADGGARRTQFAEAGNIE-EVSLEAMIEREPVTIVCSQMGWIRAMKGHVD 562

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               + F++GD  + A+HA TTD++L+L + G+ YTL A  L  GRG GE ++L++DL +
Sbjct: 563 LSQEMKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGLPGGRGLGEPLRLMVDLPN 622

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
              IV  FV+    K L+ SS G+ F+V E +I+A TR GK  L V       +   V  
Sbjct: 623 EVQIVDLFVHHPGAKRLMASSAGDGFLVAEEDILAQTRSGKQVLNVKDGVTASVCRAVAP 682

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             DHVAVVGENRKLL+F + ++PEM RGKGVRLQ YKDGG+SD   F++ +GL W+D AG
Sbjct: 683 EDDHVAVVGENRKLLVFPLTELPEMGRGKGVRLQKYKDGGLSDARTFRLEDGLVWLDPAG 742

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R   R+E +L  W  KR G G + P+GFPR  +F
Sbjct: 743 R--TRTEVELGEWAAKRAGAGRMAPRGFPRDNQF 774


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/734 (55%), Positives = 540/734 (73%), Gaps = 1/734 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEARM
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T VA L+L+G+DED V+FR  Y+ +  EPVV P  FPNLLANG  GIAVGMATSIP HN 
Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+AAL LI+ P+     LL ++ GPDFPTGG +++S+ESI+E+Y  GRG FRVRA+W
Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE  RG+W +V+TEIPY VQKSRL+EKIAEL+  K++PL+ D+RDESAEDVR+V+ PK
Sbjct: 253 KQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           ++++DP L+MES+F L+D+E++ PLN+NVL  G++P+V+ L   L+EWL H R+VL RRS
Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++  F LTE Q +AILN+RL
Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           RSLRKLEE +I++E  NL  E + I+ LL S + QW ++  +++ V+++F   T LGRRR
Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRR 492

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T F +    D A +++A IE+EP+TVV+S +GW+R+LK H  DLS L FK  D L  A  
Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQAFF 552

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A  T ++LL +++GK Y+L  G L  GRGHGE I++ IDL+ +  IV+ FV     K L+
Sbjct: 553 AENTSKVLLFASNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVSKGERKFLI 612

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
            +S G  F+V+E + ++NTRKGK  L V++  + + +  V GD VAV+G N K+++F +D
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAITTVQGDQVAVIGTNHKMVVFGLD 672

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           Q+PEM+RG+GVRLQ Y    +SDV  F+  +GL W DSAGR    S  +L  + G R   
Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732

Query: 737 GSLVPKGFPRSGKF 750
           G +  +G P+S KF
Sbjct: 733 GRIA-QGLPKSNKF 745


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/760 (34%), Positives = 420/760 (55%), Gaps = 31/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
                V  V L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+     
Sbjct: 2   FSIGKVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +KSA IVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RY
Sbjct: 62  HRKSAHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM ++   +L+ +D++ VDF   Y+    EPVV PS+ PNLL NG+SGIAVGMAT+I
Sbjct: 122 TEARMAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +  + +ID+PE+ I +L++ I GPDFPTGG I+  R+ I ++Y  GRG  +
Sbjct: 182 PPHNLREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIM-GRQGIRQAYTTGRGTIK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA    E++  G   I+VTE+PYQV K++LIEKIAEL+  K+I  + D+RDES      
Sbjct: 241 VRAVTTFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P +++  +F  + ++  F + M  L   + P+++ L  IL  +L H+++V
Sbjct: 301 IVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQ-PRILNLKEILFYYLEHQKDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ + +   + R  IL+GL IA  N+DE+I IIR     D  +  ++SRF LTE Q 
Sbjct: 360 VTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I  E   L+ + E  +S+L   +     I  E+ E+KE +  
Sbjct: 420 QAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
           +     RRT   +++  +    ++ +I +E + + I+++G+I        ++ +     +
Sbjct: 480 A-----RRT---QITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
           +A+  KE D ++      T + +L  +  GK Y L    +     +  G  I  L+ ++ 
Sbjct: 532 TAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQ 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I        +     L +V+  G       SE  ++ R G   L +   +K+  V  
Sbjct: 592 DERITAIIPVKEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKL 651

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWI 712
            TG    ++  +    + FS   +  M R  +GV+  +   G   +VI  + + E    +
Sbjct: 652 STGQEEVIIGTKKGMAIRFSETDVRPMGRTARGVKGITLSPG--DEVIGLEVVDEQAELL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +        +  RGG G +  K   ++G+ + 
Sbjct: 710 TVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEVVG 749



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 13/222 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLK 552
           + +      A +       +    +++  G ++       D S      AL  +EGD L 
Sbjct: 588 YVDQDERITAIIPVKEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLI 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               +   + +++ +  G A      ++         ++  I L+   +++   V D   
Sbjct: 648 DVKLSTGQEEVIIGTKKGMAIRFSETDVRPMGRTARGVKG-ITLSPGDEVIGLEVVDEQA 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
           +LL V+SKG       SE     R GK  + +     + E + +V     D V  +    
Sbjct: 707 ELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEVVGIVAVRPEDEVMAISGEG 766

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEG 708
            ++     +I    R   GV L    KD  ++ V      E 
Sbjct: 767 IMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQED 808



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 18/196 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   IA  + E  ++       G+                +               
Sbjct: 628 DSSRRDGIIALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETD------------- 674

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  +    GD +           +L +++ G     P          
Sbjct: 675 ---VRPMGRTARGVKGITLSPGDEVIGLEVVDEQAELLTVTSKGFGKKTPFSEYRVQGRG 731

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ I  +     N ++V         +++ +S +G    V+ +EI    R   G T +K+
Sbjct: 732 GKGIINMKVTQKNGEVVGIVAVRPEDEVMAISGEGIMIRVKAAEISTQGRATQGVTLMKL 791

Query: 645 SSEEKMKLVVKVTGDH 660
           + ++++  V K+    
Sbjct: 792 NKDDQLTAVAKIAAQE 807


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 427/766 (55%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       +R T   +   + +   + +I ++ I + +++ G+I+           
Sbjct: 477 KERFND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  +    I+    +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-C 706
           +  V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I  
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E +  +      Y +        L  RGG G        ++GK ++
Sbjct: 708 EDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A +       +      + +G  +     S        L A+  +E D + 
Sbjct: 592 EVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVI 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     I++ +++G        ++ S   +   ++  I L     +V   + +   
Sbjct: 652 SVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDM 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G        E    +R GK            K+  V  VTG+  + ++    
Sbjct: 711 NVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAG 770

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 771 IIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVA 805


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 422/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 427/766 (55%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++       ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G
Sbjct: 1   MSDNQEQA--RIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDS
Sbjct: 59  ITADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAV
Sbjct: 119 AAAMRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+E+I GPDFPT G+I+  R  I  +Y  
Sbjct: 179 GMATNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYET 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 238 GRGSIILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L
Sbjct: 298 DRNGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF 
Sbjct: 357 EHQQVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EV
Sbjct: 417 LSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEV 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       +R T   +   + +   + +I ++ I + +++ G+I+           
Sbjct: 477 KERFND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQN 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  
Sbjct: 530 RGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIVN 589

Query: 593 LIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++++  +    I+    +     L   + +G +     S        G   + +  E++
Sbjct: 590 LLEVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDE 649

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-C 706
           +  V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I  
Sbjct: 650 VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVE 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E +  +      Y +        L  RGG G        ++GK ++
Sbjct: 708 EDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A +       +      + +G  +     S        L A+  +E D + 
Sbjct: 592 EVDKGEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVI 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     I++ +++G        ++ S   +   ++  I L     +V   + +   
Sbjct: 652 SVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDM 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G        E    +R GK            K+  V  VTG+  + ++    
Sbjct: 711 NVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAG 770

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 771 IIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVA 805


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/774 (51%), Positives = 533/774 (68%), Gaps = 32/774 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN +        N    SLR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSDDNETAPGP----NDVTESLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 57  MSRLRLSPTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G+ EDAVDFRD Y+   +EP V P+ FPNLLANG+
Sbjct: 117 IDGDNPAASRYTEARMTAAAEALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGS 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A L LI +P  + + LL +I+GPDFPTGG+IVE  E++ 
Sbjct: 177 SGIAVGMATNIPPHNLHELIDACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMA 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG FR+RA+W VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D
Sbjct: 237 EAYRTGRGSFRLRAKWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESAEDVR+VL P+ RS+DP++LM  +F  SD+E RF LNMNVL  G  P+V  L  +
Sbjct: 297 VRDESAEDVRVVLEPRARSVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEV 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L HRR+VL RRS  R+  ID R+E+L+G +IA+L++D +I IIR +D PK  +++ 
Sbjct: 357 LRAFLDHRRDVLVRRSRHRLGKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSALMAE 416

Query: 421 FS------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LTE Q +AILN+RLRSLR+LEE ++ +E D L A
Sbjct: 417 DWAHPHIRATSEKDYVGPKATDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDALRA 476

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E++ I +LL     QW +IA E+RE ++ F +++  G RRT F   +      + +AMI+
Sbjct: 477 ERQGIMALLADEALQWARIADELRETRKQFGRTSPGGARRTQFALAADVAYVPI-EAMID 535

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +EPITVV S  GW+R++  H      L FK+GD+ +   HA TTD++L+   +G+ YT+ 
Sbjct: 536 REPITVVCSQMGWVRAMTGHIDLTRDLKFKDGDAARFTFHAETTDKLLVFGANGRFYTVS 595

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A NL  GRG GE ++L+IDL +  +I+   ++    KLLV S+ GN F+V E E++A TR
Sbjct: 596 AANLPGGRGMGEPLRLMIDLPNEAEIIDILIHKPGEKLLVASTDGNGFVVPEVEVVAQTR 655

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
            GK  L + +    +L  ++ GDHVAVVGENRK+L+F ID++PEM+RGKGVRLQ YKDGG
Sbjct: 656 AGKQVLNLGA-STARLCKRIAGDHVAVVGENRKVLVFGIDELPEMTRGKGVRLQKYKDGG 714

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +SD   F + +GLTW+D AGR   R++++L  W+GKR   G + P+GFPR  +F
Sbjct: 715 LSDATTFTLADGLTWLDPAGR--TRTQSELDEWIGKRATAGRMAPRGFPRDNRF 766


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/782 (49%), Positives = 526/782 (67%), Gaps = 37/782 (4%)

Query: 3   VDNISNSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            D   +++  + +N + +  LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM
Sbjct: 2   SDTQDDTDAPMPQNGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNI
Sbjct: 62  NRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTEARMT +AE +L+G++ED+VDFRD Y+   +EP V P+ FPN+LANG +
Sbjct: 122 DGDNPAASRYTEARMTFIAEAMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANGAA 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A + LI +P    + LL+Y+ GPDFPTGGIIVE R++I +
Sbjct: 182 GIAVGMATNIPPHNIAELIDACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNIAK 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG FR+R    VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L DI
Sbjct: 242 AYRTGRGSFRLRCTHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADI 301

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDESAED+RIVL PK++++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  +  +L
Sbjct: 302 RDESAEDIRIVLEPKSKNVDPDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMKEVL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           + +L HRR+VL RRS +RM  ID R+E+L G +IA+LN+D +I IIR ++ PK  ++   
Sbjct: 362 RAFLDHRRDVLRRRSEYRMGKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSALMREN 421

Query: 422 S----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q +AILN+RLRSLR+LEE ++  E D L  E+ 
Sbjct: 422 WGLDHPRAYEESDYVTPAPGEGELSEVQAEAILNMRLRSLRRLEEVELTKERDALREERA 481

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  LL S   QW++I  ++R  K+ F K    G RR+ F E    ++  L +AMI++EP
Sbjct: 482 GLVELLGSDDLQWSKITEQLRATKKQFGKDYVGGARRSRFAEAGEVEEVPL-EAMIDREP 540

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           ITVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A N
Sbjct: 541 ITVVCSQMGWIRAMTGHIDLNRELKFKDGDGARFIFHAETTDRLLVFGSNGRFYTVSAAN 600

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG GE ++L++DL +  +IV   +++   KLLV SS GN FI  E +I+A TR GK
Sbjct: 601 LPGGRGMGEPLRLMVDLPNEVEIVDILIHNPEGKLLVASSAGNGFICAEKDIVAQTRTGK 660

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------ 693
             L V  +++ ++ + VTGDHVA+V EN K L+FS++++PE++RGKGVRLQ Y       
Sbjct: 661 QVLNVKDDDRAQICIPVTGDHVAIVSENGKFLVFSVEEMPELTRGKGVRLQKYNMARGKQ 720

Query: 694 -----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                DGG+SD+  F   EG++W    G+   R E DL  WLGKR G+G   P GFPR+ 
Sbjct: 721 GSLELDGGLSDITTFNWDEGISWEMGGGK--TRHETDLSQWLGKRAGIGKRPPYGFPRNY 778

Query: 749 KF 750
           KF
Sbjct: 779 KF 780


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/763 (33%), Positives = 424/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG+IDGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M++++  +L+ + ++ +D++D Y+  + EPVV P++FPNLL NG +GIAVGMA
Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NPEI+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + D+RDES   
Sbjct: 241 SITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRR 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  P+V+ L   L  +L H+
Sbjct: 301 GLRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGE-PKVLNLKQTLYYYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF+L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFALSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   LL    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+        R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FNDE------RRTEITIGGIE-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L++
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLE 592

Query: 596 LNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++    I+    +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKDEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGL 709
           V   +GD   +V   N  L+ F+   +  M R   GV+  +  +     V+  +I  E +
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLDED--DHVVGMEIVEENM 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        +  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKLVA 753



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A +       +      + +G  +     S        L A+  +E D + 
Sbjct: 592 EVDKDEWVNAIIPIREFGDDQFLFFTTKQGISKRTPLSSFSNIRTNGLIAISLREEDEVI 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     I++ +++G        ++ S   +   ++  I L+ +  +V   + +   
Sbjct: 652 SVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLDEDDHVVGMEIVEENM 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G        E    +R GK            K+  V  VTG+  + ++    
Sbjct: 711 NVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKLVAVKSVTGEEDIMLITAAG 770

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++   ++QI +M R  +GVRL   +D      + 
Sbjct: 771 VIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVA 805


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 420/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/781 (49%), Positives = 520/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ +         ++   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 5   VDDPTTPEMPANGELRE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG+SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGSSG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNISELIDACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+RA+  +E++GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RI+L PK++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIILEPKSKNVDPEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  
Sbjct: 424 DREHPRAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL+S   QW +I  ++RE K+ F K  + G RRT F E    +     +AMI++EPI
Sbjct: 484 LAELLDSEDLQWKKITEQLRETKKQFGKDYEGGSRRTQFAEAGEVE-DVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV  F+++   +LLV S  GN F+  E EI+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +E+ K+ + V+GDHVAVV EN K L+FSI+++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDERAKICIPVSGDHVAVVSENGKFLVFSIEEMPELTRGKGVRLQKYNMARGRQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG++DV  F   EGL W    G+   R E DL  WLGKR GVG   P GFP+  K
Sbjct: 723 SLELDGGLADVTTFNWDEGLQWEMGGGK--TRHETDLSQWLGKRAGVGKRPPYGFPKDYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/781 (49%), Positives = 525/781 (67%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+    ++     V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS
Sbjct: 5   VDDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLTSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT VAE +L+G+ E+AVDFRD Y+   +EP V P+ FPN+LANG +G
Sbjct: 124 GDNPAASRYTEARMTFVAEAMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANGAAG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNIGELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R    VE++GRG W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+R
Sbjct: 244 YNTGRGSFRLRCTHEVEDLGRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RIVL PK++++DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  
Sbjct: 424 SLDHPRAYTEADYVSPAIGAGELTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S   QW++IA ++++ K+ F K+ + G RRT F E    ++  L +AMI++EPI
Sbjct: 484 LVELLASEDLQWSRIAEQLKDTKKQFGKTYEGGPRRTRFAEAGEVEEVPL-EAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+ +++G+ YT+ A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV   +++   +LLV S  GN FI  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDILIHNPEGRLLVASDAGNGFICAEKDIVAQTRSGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +++ K+ ++VTGDHVAVV EN K L+F+++++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDDRAKICIRVTGDHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SDV  F   +G++W    G+   R E DL  WLGKR G+G   P GFPR+ K
Sbjct: 723 SLELDGGLSDVTTFNWDDGISWEMGGGK--TRHETDLGQWLGKRAGIGKRPPYGFPRNYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/756 (33%), Positives = 416/756 (55%), Gaps = 28/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL     F+KS
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+   HPHGD ++YDS+VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EPV+ P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +IDNP ++ ++L++ I GPDFPTG  I+  R+ I  +YR GRG  ++RA+
Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIM-GRDGIRAAYRTGRGSIKIRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIP+QV K++L+EKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 ATIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P++++  ++  + M+  F + M  L   + P+V+ L  +L  +L H+++V+ RR
Sbjct: 306 LKKDANPNVILNQLYKFTQMQESFGIIMLALVNNQ-PKVLNLAQVLFYYLEHQKDVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  I++GL IA  ++DE+I IIR     ++ K  +V+ F+LTE Q +AI+
Sbjct: 365 TKYELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLRSL  LE  +++ E  +LLA+ + + S+L   K+    I  E+ EVK+ F+     
Sbjct: 425 EMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     +  D     + +I++E + V I+N+G+I+          +     ++A+ 
Sbjct: 482 --RRTVISNEAAGDFDI--EDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMG 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D +K    A T   +L  +  GKAY L    +        G  +  L+ ++  + +
Sbjct: 538 TKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T      +     L + + +G       SE   + R G   + +   +++  V    G 
Sbjct: 598 TTVIPIKDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGR 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + + +       + F  + +  M R  +GV+  +   G  S V    + +G   +     
Sbjct: 658 EEIILSTREGMAIRFPEEDVRPMGRTARGVKGITL-TGDDSVVNMDVVKDGGDLLVVTAN 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  N        RGG G +  K  PR+G  + +
Sbjct: 717 GYGKRTNLDEYRTQTRGGKGIINIKTSPRNGPVVGA 752



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 12/197 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E    + + +G ++       D S      A++  E D L      H  + I+L + +G
Sbjct: 608 EEAYLFMATKQGVVKKTNLSEYDTSRRDGINAINLDESDELVAVELTHGREEIILSTREG 667

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            A   P  ++         ++  I L  +  +V   V      LLVV++ G        E
Sbjct: 668 MAIRFPEEDVRPMGRTARGVKG-ITLTGDDSVVNMDVVKDGGDLLVVTANGYGKRTNLDE 726

Query: 631 IIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
               TR GK  + +     +   +  +V    D + ++     ++  +   +    R  +
Sbjct: 727 YRTQTRGGKGIINIKTSPRNGPVVGALVVKDDDEIMMISAEGIMIRLAAKDVSTFGRNTQ 786

Query: 686 GVRLQSYKDGGISDVIC 702
           GV L    +      + 
Sbjct: 787 GVTLMKVAENDHIVAVA 803



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 18/194 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++    A  + E  E+ +     GR                ++              
Sbjct: 630 DTSRRDGINAINLDESDELVAVELTHGREEIILSTREGMAIRFPEED------------- 676

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  +     DS+           +L+++ +G           +    
Sbjct: 677 ---VRPMGRTARGVKGITLTGDDSVVNMDVVKDGGDLLVVTANGYGKRTNLDEYRTQTRG 733

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ I  +     N  +V A V     +++++S++G    +   ++    R   G T +KV
Sbjct: 734 GKGIINIKTSPRNGPVVGALVVKDDDEIMMISAEGIMIRLAAKDVSTFGRNTQGVTLMKV 793

Query: 645 SSEEKMKLVVKVTG 658
           +  + +  V KV G
Sbjct: 794 AENDHIVAVAKVAG 807


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/739 (51%), Positives = 528/739 (71%), Gaps = 8/739 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD    FKK 
Sbjct: 9   DIRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPSGGFKKC 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA+
Sbjct: 69  ARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYTEAK 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A  +++G+DED+VDFR TY+  + EPVV PS FPNLLANG++GIAVGMATSIP HN
Sbjct: 129 LTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSAGIAVGMATSIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE++ +I E+YR G+G FRVRA+
Sbjct: 189 IGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITEAYRTGKGAFRVRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED+R+VL P
Sbjct: 249 WAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAEDIRLVLEP 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLAHRREV 371
           +NR+++ +L+ME +F  +D+E+RF LNMNVL         P VM L  +L+ +L HR  V
Sbjct: 309 RNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNLKEVLRAFLDHRMVV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+E Q +AI
Sbjct: 369 LERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPKAELIKTFKLSEVQAEAI 428

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E ++ F  +T 
Sbjct: 429 LNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGGATA 488

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           LG+RRT   +          +A +E+E IT+V+S +GWIR+LK HS    AL FKEGD L
Sbjct: 489 LGKRRTELGDAPS-AVVVPIEAYVEREAITMVLSEKGWIRALKGHSDAPEALKFKEGDQL 547

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI    V+   
Sbjct: 548 GHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAAVMVHKPG 607

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLLV ++    F+VEE+E++A TR GK  L  +  EK K  +   GD VAV+GENRKLL
Sbjct: 608 RKLLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEKAKFCLPFEGDAVAVIGENRKLL 667

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F  ++IP ++RG+GV LQ Y+DGG++D+  F + +GLTW         R+E+DL  WLG
Sbjct: 668 VFMAEEIPVLTRGRGVILQKYRDGGMADIKVFTLAQGLTWNLG---DRVRTESDLTPWLG 724

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KR  VG L P GFPR+ +F
Sbjct: 725 KRASVGRLPPTGFPRNNRF 743


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IRN       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTGD  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGDEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 420/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   +     + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGMEF-IEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 805


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 753



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 12/220 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 712 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           ++   +DQI +M R  +GVRL   +D      +     + 
Sbjct: 772 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/758 (32%), Positives = 417/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+    A+K
Sbjct: 6   QSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +++ +++D +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +  LAL  NP+IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG   +R
Sbjct: 186 HQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++
Sbjct: 245 AKTEIEE-HHGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +LAH+  V+ 
Sbjct: 304 IEVRKDANANVLLNNLYKQTALQTSFGINLLALV-EGQPKVLNLKECLEHYLAHQVIVIR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ RF L+  Q  A
Sbjct: 363 RRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   L+    ++ ++L   ++  + I  E+ E+KE ++   
Sbjct: 423 ILDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYNDER 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                      +S ++     + +I ++ + + +++ G+I+          K     +  
Sbjct: 483 KTA--------ISASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRGGRGIQG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++     ++   IL  +  GK Y L    +        G  I  L+ +  ++
Sbjct: 535 MGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T      +     L  ++  G A   + S      R G   + +   +++  V    
Sbjct: 595 YISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTN 654

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           GD   +V       + F    +  M R   GV+  S    G   V+   I E G   +  
Sbjct: 655 GDKEVIVGTRQGMAIRFHETDVRLMGRTATGVKGISLT--GDDHVVGMDIVEDGQDVLIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + +        +  RGG G        ++G  +S
Sbjct: 713 TEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVS 750



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 16/216 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +      ++     ++  G  +  +  S        L A++ +EGD L  
Sbjct: 590 IEQDEYISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +    +++ +  G A      +  L+     G      I L  +  +V   + +  
Sbjct: 650 VRLTNGDKEVIVGTRQGMAIRFHETDVRLMGRTATGVKG---ISLTGDDHVVGMDIVEDG 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +L+V+ KG       ++    TR GK      +   +   + L V      + ++  +
Sbjct: 707 QDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVSLKVVSVDHDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++   +  I    R  +GV L    +G     + 
Sbjct: 767 GIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVA 802


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/763 (33%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 481 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 533

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 534 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 593

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 594 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 654 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 711

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +      Y +        L  RGG G        ++GK ++
Sbjct: 712 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVA 754



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 594 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 653

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 654 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDVN 712

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 713 VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 772

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   +D      + 
Sbjct: 773 IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVA 806


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/746 (53%), Positives = 537/746 (71%), Gaps = 4/746 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ ++      +    L  AL +RYLAYALSTI  R++PD+RDG KPVHRR++ AM ++ 
Sbjct: 1   MTTTSVEDPPPIHDTWLADALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD G+ FKKSAR+VG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 61  LDPGSGFKKSARVVGDVMGKFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T+VA L+L G+DED VDFR TY+ E  EPVV PS FPNLLANG  GIAV
Sbjct: 121 AAAMRYTEARLTEVAALLLDGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HNV E+C A   LI +PE   E L+E + GPD PTGG++VE+RES++E+YR 
Sbjct: 181 GMATSIPPHNVDELCTALQHLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRA+W VE +  G+W IVVTEIPYQVQKSRL+E++AEL+  +++ LL+DIRDES
Sbjct: 241 GRGSFRVRAKWEVEPLKNGTWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A D+R+VL PK+R++DPD+LMES+F  +D+E+R  LN+NVL    VP+VM L   L+ +L
Sbjct: 301 AMDIRLVLEPKSRNVDPDVLMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAFL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HR++VL RR+  R++ I  R+E+L G LIAYLN+DEII I+R ED+PK VM+  F L++
Sbjct: 361 DHRQDVLVRRTRHRLEKIAHRLEVLGGYLIAYLNLDEIIRIVREEDEPKAVMMRTFELSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLR+LR+LEE +I+ E +NL AE++ + +LLN   +QW  ++ ++ E++  
Sbjct: 421 VQAEAILNMRLRALRRLEEIEIRKEFENLSAERDDLTALLNDDARQWRAVSDQLGEIRRG 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K+T++GRRRT              +A++E+EPITV+ S +GWIR+LK H      + +
Sbjct: 481 FGKTTEIGRRRTVIGSTPNP-VVVPTEALVEREPITVICSEKGWIRALKGHIGLDQEVKY 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD  +  LHA TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL +++D+V  
Sbjct: 540 KEGDGERFRLHAETTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLANDEDVVAI 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
             Y +  +LLV SS+G  F+V   +++A TR GK  L V S  +  + V V GD VAVVG
Sbjct: 600 RPYRTGDRLLVASSEGRGFVVPVDDVVAQTRAGKQVLVVDSGARANICVTVAGDTVAVVG 659

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSEN 724
            NRKLL+F    IPEM RGKGV LQ YK GG ++D + FK  +GL+W+   GR   R+E 
Sbjct: 660 TNRKLLVFDAADIPEMVRGKGVILQKYKPGGHLADAVVFKAEDGLSWVLQGGR--RRTEP 717

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  W GKR G G   P GFPR  +F
Sbjct: 718 DLGVWRGKRAGAGKNPPTGFPRPPRF 743


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/752 (51%), Positives = 518/752 (68%), Gaps = 25/752 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E+ L   +AF+KSA+I G
Sbjct: 18  PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELKLSPTSAFRKSAKISG 77

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +A
Sbjct: 78  DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAIA 137

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++G+ E+AVDFR  Y+    EPVV P+ FP+LLANG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 138 EALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSSGIAVGMATNIPPHNLHELI 197

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  LALI +P++    L++ I GPDFPTGG+IVE R SI++SYR GRG FR+RARW VE+
Sbjct: 198 DGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILDSYRTGRGSFRLRARWAVED 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPYQVQKS+LIE++AELI  K+ PLL D+RDES  DVR++L P+ R++
Sbjct: 258 LGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADVRDESTADVRLILEPRVRTV 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DPD+LM ++F  SD+E RF LNMNVL  GR P+V  L  +L+ +L H+REVL RRS  R+
Sbjct: 318 DPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREVLRAFLDHKREVLQRRSRHRL 377

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------PVMV 418
           + ID R+EIL+G +I +LN+D +I IIR +  PK                      P   
Sbjct: 378 EKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRALMAEDWGKKHRRATSEKDYVPPAP 437

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LTE Q +AILN+RLRSLR+LEE ++ +E D L+ E+  ++ LL S   QW +I  +
Sbjct: 438 GEGELTEVQAEAILNMRLRSLRRLEELELIAERDALMVERAGLEDLLASDALQWKRIGKD 497

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + EV++ F K++  G RR+TF E   A+     +AMIE+EPITV+ S  GWIR++K H  
Sbjct: 498 LAEVQKTFGKASKGGARRSTFAEAGEAE-EVPYEAMIEREPITVICSKMGWIRAMKGHVA 556

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
             S   FK+GD  +   HA TTDRI+L+ ++G+ YTL   NL  GRG GE ++L++DL +
Sbjct: 557 LDSEQKFKDGDEGRFLFHAETTDRIILIGSNGRVYTLLGANLPGGRGMGEPVRLMVDLPN 616

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           + +I+   ++    KLL+ S+ G+ F++   E++A T+ GK  L V    K  L   V G
Sbjct: 617 DAEIIDLMIHRPGLKLLIASTAGDGFVLPSDEVVAQTKAGKQVLVVREGVKTALCRPVKG 676

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D VAVVG+NRK+L+F +  +PEM+RGKGVRLQ YKDGG++D   F + +GL+W D AGR 
Sbjct: 677 DAVAVVGDNRKMLVFPLADLPEMARGKGVRLQKYKDGGLADATTFVLAQGLSWKDPAGR- 735

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R+E DL  W   R   G + P+GFPR  +F
Sbjct: 736 -TRTETDLAEWQAARATAGRMAPRGFPRDNRF 766


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/781 (49%), Positives = 518/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+    ++     V    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+
Sbjct: 5   VDDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G++E+AVDFRD Y+   +EP V P+ FPN+LANG SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGASG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNIAELIDACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG FR+R +  VE++GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YSTGRGSFRLRCQHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESA+D+RI+L PK++++DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESADDIRIILEPKSKNVDPEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L+G +IA+LN+D +I IIR +D PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMREDW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q +AILN+RLRSLR+LEE ++  E D L  E+  
Sbjct: 424 DRDHPRAYSEAEYVSPGEGVGELTEVQAEAILNMRLRSLRRLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S + QW++I  ++++ K+ F K    G RRT F E    +     +AMI++EPI
Sbjct: 484 LVELLGSEELQWSRITEQLKDTKKQFGKDYAGGARRTRFAEAGEVE-DVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV   +++   +LLV S  GN FI  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPLRLMVDLPNEVEIVDILIHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  ++K K+ + V GDHVAVV EN K L+FS++++PE+SRGKGVRLQ Y        
Sbjct: 663 VLNVKDDDKAKICIPVEGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SD+  F   EGL W    G+   R E DL  WLGKR  VG   P GFPR+ K
Sbjct: 723 ALELDGGLSDITTFNWDEGLKWEMGGGK--TRHEGDLTEWLGKRASVGKRPPHGFPRNYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 422/755 (55%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   VQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H +
Sbjct: 129 SKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++   
Sbjct: 248 QIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           +F ++  + R  IL+GL +A  ++DE+I++IRN       K  ++ +FSLTE Q  AIL+
Sbjct: 367 AFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFSLTEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEVKERFNDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
             R T    S  +     + +I +E I V +++ G+I+          K     +  +  
Sbjct: 483 --RRTEIVTSGLET-IEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQKRGGKGIQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++  +   T D IL  S  GK Y      +        G  I  L+++   + I 
Sbjct: 540 NEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWIN 599

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  +D    L   +  G +     S+       G   L +  E+++  V    G+ 
Sbjct: 600 AIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELIAVRLTDGNK 659

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
            + +  +N  L+ F    + +M R   GV+  +  D  +  V+  +I E  +  +    +
Sbjct: 660 QIIIGTKNGLLIRFPETDVRQMGRTAAGVKGINLTDDDV--VVGMEILEEDSHVLIVTEK 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G    K    +G  ++
Sbjct: 718 GYGKLTPASEYRVQSRGGKGLKTCKITENNGSLVT 752



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 14/230 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      A +     + E      +  G  +              L AL  ++ D L 
Sbjct: 591 EVEKGEWINAIIPVGEFDDESYLFFTTKHGISKRTPLSQFANIRNNGLIALSLRDEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++         ++  I+L  +  +V   + +   
Sbjct: 651 AVRLTDGNKQIIIGTKNGLLIRFPETDVRQMGRTAAGVKG-INLTDDDVVVGMEILEEDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG   +   SE    +R GK         +   +  V   TG+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENNGSLVTVKATTGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            ++   I  I    R  +GVRL     G    V    + E     DS  +
Sbjct: 770 VIIRMDIKDISTTGRVTQGVRLIRL--GEQEHVATVALVEKDEENDSEEQ 817


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 56/172 (32%), Gaps = 11/172 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVA 662
           LVVS  G        E     R G   +     +K   VV  T     D + 
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELM 760


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/766 (34%), Positives = 426/766 (55%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +  +++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+A   ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+        R T    S  +     + +IE+E I + +++ G+++          K
Sbjct: 476 KERFNDE------RRTEIVTSGLET-IEDEDLIERENIVITLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +        G  I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   + +G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSTFDEELYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F  + + +M R   GV+  +  D  +  V+  +I E
Sbjct: 649 LMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTAAGVKGITLTDDDV--VVGMEILE 706

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +      Y +        +  RGG G    K    +G  ++
Sbjct: 707 EDSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLVT 752



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +  +  ++E      + +G  +           +  L AL  +E D L 
Sbjct: 591 EVEKGEWINAIIPVSTFDEELYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 651 AVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTAAGVKG-ITLTDDDVVVGMEILEEDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G       SE    +R GK         S   +  V    G+  + ++  + 
Sbjct: 710 HVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLVTVKATRGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            L+   I+ I    R  +GVRL    D      +  
Sbjct: 770 VLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVAL 805


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/755 (33%), Positives = 422/755 (55%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     FKKSA
Sbjct: 9   VKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPFKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NGTSGIAVGMAT+IP H +
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+   P++++++L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+   G   I+V EIPYQV K++LIEKIAEL+  KRI  + D+RDES  +   ++   
Sbjct: 248 EIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+
Sbjct: 308 RKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLQHYLDHQKVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  ++DE+I +IR+    D  +  ++++F+L+E Q  AIL+
Sbjct: 367 EFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFNLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I+ E  +L+A   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEVKERFND----- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            +R T       ++    + +I +E I + ++++G+I+          K     +  +  
Sbjct: 482 -KRRTEIVAGGIEQ-IEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQKRGGRGIQGMGT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++  +   T D IL  +  GK Y      +   S    G  I  L+ ++ ++ + 
Sbjct: 540 NEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGVDKDEWVN 599

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +     L   + +G +     S        G   L +  ++++  V    G  
Sbjct: 600 AIIPVEEFADDWFLFFTTKQGISKRSPLSSFANIRNNGLIALNLREDDELISVRLTDGSK 659

Query: 661 VAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
             ++   +  L+ F  + +  M R   GV+  S   G   +V+  ++ E  +  +     
Sbjct: 660 EIIIGTSHGMLIRFPEEDVRSMGRTATGVKGISLSAG--DEVVGMEVLEDDSQILIVTKN 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G        ++G  +S
Sbjct: 718 GYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVS 752



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L AL+ +E D L  
Sbjct: 592 VDKDEWVNAIIPVEEFADDWFLFFTTKQGISKRSPLSSFANIRNNGLIALNLREDDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  I++ ++ G     P  ++ S       ++  I L+   ++V   V +   +
Sbjct: 652 VRLTDGSKEIIIGTSHGMLIRFPEEDVRSMGRTATGVKG-ISLSAGDEVVGMEVLEDDSQ 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRK 669
           +L+V+  G        E     R GK      +   +   + +      + V ++     
Sbjct: 711 ILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVSMKAVTGEEDVMLITTGGV 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           L+  +++ I  M R  +GVRL    +     V    
Sbjct: 771 LIRMAVNDISTMGRNTQGVRLIRINEDADEAVSTVA 806



 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 465 LNSGKQQWN--QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           L+S     N   IA  +RE  E+ S     G +               ++          
Sbjct: 627 LSSFANIRNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEED--------- 677

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                  +RS+   +  +  +    GD +          +IL+++ +G     PAG    
Sbjct: 678 -------VRSMGRTATGVKGISLSAGDEVVGMEVLEDDSQILIVTKNGYGKRTPAGEYRV 730

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
               G+ I+     + N  +V+         ++++++ G    +  ++I    R   G  
Sbjct: 731 QGRGGKGIKTCNITDKNGSLVSMKAVTGEEDVMLITTGGVLIRMAVNDISTMGRNTQGVR 790

Query: 641 FLKVSSEEK 649
            ++++ +  
Sbjct: 791 LIRINEDAD 799


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 13/212 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDV 700
           +  ++  I   SR   GV+L    +D  +  +
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTI 800



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 18/192 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  +RE  E+       G     F           +                  
Sbjct: 631 RKNGLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETD---------------- 674

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  + A+  +EGD       A   +++L++S +G                G  
Sbjct: 675 VRPMGRTASGVKAISLREGDVAVCMDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIG 734

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +      +    +V A V     +L++++++G A  +  S+I   +R   G   ++   +
Sbjct: 735 LITYKVSDKTGKVVGATVCKEDDELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLED 794

Query: 648 EKMKLVVKVTGD 659
           E +  + K++GD
Sbjct: 795 EAVVTIAKISGD 806


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/791 (34%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+IE+L+ +I GPDFPT  + +  R+ I ++YR GRG   +R+
Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAM-INGRKGIEDAYRTGRGKIYLRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 KADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L   + P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQ-PRLFNLKDMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410
           R+ F ++    R  IL+GL IA  NIDEII +IRN                         
Sbjct: 364 RTIFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVML 423

Query: 411 -----DKPKPVM--------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                D  +P            ++ LTE Q  AIL+LRL  L  LE  +I  E   LL  
Sbjct: 424 EATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IGELMFILSSPERLMEVIREELEAVRDGFGDE-----RRT---EITAASADIDIEDLINQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  L+ L  ++ I        Y+    + + +S G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNLLPLEQDERITAILPVKEYEDDKFVFMATSDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +   + +  V    GD  V +  ++ K++ F   Q+  M R
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +G     +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGIKLAEGDKVVSLIVPHNEGD-VLTVTENGYGKRTELCEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGCVVGA 785


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  709 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/781 (49%), Positives = 519/781 (66%), Gaps = 37/781 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ ++        ++   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AMS
Sbjct: 5   VDDPTSPEMPANGELRE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 64  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNID 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+ EDAVDFRD Y+    EP V P+ FPN+LANG SG
Sbjct: 124 GDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGASG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LI  P  + + LL+Y+ GPDFPTGG IVE +E+I ++
Sbjct: 184 IAVGMATNIPPHNISELIDACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG FR+RA+  +E++GRG W +VVTEIPYQVQKS+LIEKIAELI  K++P+L D+R
Sbjct: 244 YRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+RI+L PK++++DP++LM  +   SD+E RF LNMNVL  G  P+V  +  +L+
Sbjct: 304 DESAEDIRIILEPKSKNVDPEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L HRR+VL RRS  RM  ID R+E+L G +IA+LN+D +I IIR ++ PK  ++    
Sbjct: 364 AFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALMRENW 423

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLRKLEE ++  E D L  E+  
Sbjct: 424 DREHPRAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAG 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL S + QW +I  ++RE K+ F K+ + G RRT F E    +     +AMI++EPI
Sbjct: 484 LVELLGSEELQWKKITEQLRETKKQFGKNYEGGARRTQFAEAGEIE-DVPLEAMIDREPI 542

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GWIR++  H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A NL
Sbjct: 543 TVVCSQMGWIRAMTGHIDLSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANL 602

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L++DL +  +IV  F+++   +LLV S  GN F+  E +I+A TR GK 
Sbjct: 603 PGGRGMGEPVRLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQ 662

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +E+ K+ + V GDHVAVV EN K L+F+I+++PE++RGKGVRLQ Y        
Sbjct: 663 VLNVKDDERAKICIPVAGDHVAVVSENGKFLVFAIEEMPELTRGKGVRLQKYNMARGRQG 722

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG++DV  F   EGL W    G+   R E DL  WLGKR G+G   P GFP+  K
Sbjct: 723 ALELDGGLADVTTFNWDEGLHWEMGGGKI--RHETDLTQWLGKRAGIGKRPPYGFPKDYK 780

Query: 750 F 750
           F
Sbjct: 781 F 781


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 18/231 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVI-----CFKICEGLTWIDS 714
           +  ++  I   SR   GV+L    +D  +  +        +  E +T +D 
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDE 819


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVI-----CFKICEGLTWIDSAG 716
           +  ++  I   SR   GV+L    +D  +  +        +  E +T +D + 
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVI-----CFKICEGLTWIDSAG 716
           +  ++  I   SR   GV+L    +D  +  +        +  E +T +D + 
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVI-----CFKICEGLTWIDSAG 716
           +  ++  I   SR   GV+L    +D  +  +        +  E +T +D + 
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/763 (50%), Positives = 516/763 (67%), Gaps = 36/763 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM+ + L     F KSA+I G
Sbjct: 22  PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISG 81

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           + +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VA
Sbjct: 82  DTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVA 141

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L G++E+AVDFRD Y+   +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ 
Sbjct: 142 EAMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELI 201

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A L LI  P+   + LL Y+ GPDFPTGGIIVE +E+I ++Y  GRG FR+R +  VE+
Sbjct: 202 DACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCKHEVED 261

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W IVVTEIPYQVQKS+LIEKIAELI  K++P+L D+RDESA+D+RIVL PK++++
Sbjct: 262 LGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESADDIRIVLEPKSKNV 321

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++LM  +F  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRR+VL RRS  RM
Sbjct: 322 DPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRM 381

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------------ 422
           + ID R+E+L+G +IA+LN+D +I IIR ++ PK  ++                      
Sbjct: 382 EKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALIREDWSKDHPRALTEADYITPAR 441

Query: 423 ----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               LTE Q +AILN+RLRSLRKLEE ++  E D L  E+  +  LL S + QW++I+ +
Sbjct: 442 GVGELTEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLASEELQWSRISEQ 501

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++E K+ F K  + G RRT F E   A+     +AMI++EPITVV S  GWIR++  H  
Sbjct: 502 LKETKKQFGKDYEGGARRTLFAEAGEAE-DVPLEAMIDREPITVVCSQMGWIRAMTGHID 560

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               L FK+GD+ +   HA TTD++L+  ++G+ YTL A NL  GRG GE ++L++DL +
Sbjct: 561 LSRELKFKDGDAPRFIFHAETTDKLLVFGSNGRFYTLSAANLPGGRGMGEPLRLMVDLPN 620

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
             +IV   +++   +LLV S  GN FI  E EI+A TR GK  L V  +E+ K+ + V G
Sbjct: 621 EAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDERAKVCIPVEG 680

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707
           DHVAVV EN K L+F+++++PE++RGKGVRLQ Y            DGG+SD+  F+  E
Sbjct: 681 DHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDITTFRWDE 740

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GL W    G+   R   DL  WLGKR  VG   P GFPRS KF
Sbjct: 741 GLKWEMGGGK--TRHAADLSEWLGKRASVGKRPPHGFPRSYKF 781


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/749 (49%), Positives = 516/749 (68%), Gaps = 5/749 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   L E++V+      AL +RYL YALSTI  R++PD+RDG KPVHRR++ AM  + 
Sbjct: 1   MTDIAELPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           LD  + +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGN+DGD+
Sbjct: 61  LDPASGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNVDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T  A  ++ G+DE  VDFR TYN E+ EP +FP  FPNLLANG SGIAV
Sbjct: 121 AAAMRYTEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HNV E+ +AA+ LID PE    +LL+++ GPDFPTGG++V+S  +I E+Y  
Sbjct: 181 GMATSIPPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAEAYAT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FRVRA+    +   G W +VV++IPYQVQKS+LIE+IAELI  K++P+L D+RDES
Sbjct: 241 GRGAFRVRAKIEKVDEKGGGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            E++RIVL P++R++D D+LMES+F L+++E R  LN+NVL   R P VM L   L  WL
Sbjct: 301 DEEIRIVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQALAAWL 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            H+ EVL RRS  R+  I  R+E+L G LI YLN+D +I IIR ED+PKPVM++ F LT+
Sbjct: 361 KHQFEVLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPKPVMMAEFGLTD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RLRSLR+LEE ++  E   L AE +++++L+ S  +Q  ++  ++  ++E 
Sbjct: 421 RQAEAILNMRLRSLRRLEEMELTRERATLDAEGKELEALIASPARQRTRMKRDLAALRER 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSAL 543
           +   T LG RRT   E +   +    +AM+E+EP+TV++S RGWIR++K H      +A+
Sbjct: 481 YGPETALGARRTLLSEAA-PAREIPLEAMVEREPVTVILSQRGWIRAMKGHLDEAAQAAV 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FKEGD    A+ A TTDRILL +  G+ YTLPA  L  GRG GE ++L  D++ +  + 
Sbjct: 540 KFKEGDGPAHAIRAQTTDRILLATDQGRFYTLPADKLPGGRGFGEPVRLFADIDADARVA 599

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHV 661
                    +LL+ S  G  F+V+ +++ A TRKGK  + +    ++K+V  V  T D+V
Sbjct: 600 ALLAAKPGAELLLASGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           A +G+NRK++IF + ++P M+RG+GV +Q YKDGG+SD I F++ +GL+W         R
Sbjct: 660 AAIGDNRKMVIFPLGELPRMARGQGVTIQRYKDGGLSDAISFRLDDGLSWTMGGDTGRTR 719

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +E DL  W   RG  G + P GFPR  +F
Sbjct: 720 TEADLTPWRAARGAAGRMPPVGFPRDNRF 748


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/750 (53%), Positives = 529/750 (70%), Gaps = 11/750 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N      E++   S   AL ERYLAYALSTI  R++PD+RDG KPVHRR++ A
Sbjct: 1   MANDTYTNPG----EHIDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD G  FKKSAR+VG+V+GK HPHGD ++YD++VRLAQ F  RY L+ GQGNFGN
Sbjct: 57  MRQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+VA L+L G+DED+VDFR TY+ E  EPV+ P+ FPNLLANG 
Sbjct: 117 IDGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HNV E+ +A+L LI +P  SI+ L++Y+ GPDFPTGG++VE  +SI 
Sbjct: 177 QGIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIR 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRGGFRVRARW +E+   G W IVVTEIPYQVQKSRLIE++AE++ AK++P+L D
Sbjct: 237 DAYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDESAED+RIVL PK+R L+P+++MES+F LSD+ETR PLN+NVL     P VM L G 
Sbjct: 297 IRDESAEDLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  WLAHR+ VL RR+ FR+  I  R+E+L+G LI YLN+DE+IAIIR  + P+  +++R
Sbjct: 357 LNAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDALIAR 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE Q +AIL++RLRSLR+LEE  +++E DNL+AE+  + +LL +   QW +IA EI+
Sbjct: 417 FDLTETQANAILDMRLRSLRRLEEMALRTERDNLVAEQADLQNLLANEDLQWKKIATEIK 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ F+K     RRRTT  +    D     + ++E+EPIT++ S +GWIR++K H    
Sbjct: 477 DMKDSFAKH---DRRRTTLADAPEIDFDPT-EILVEREPITIICSAKGWIRAMKGHQELD 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S   FKEGD   + LHA TTD+ILL + +G+ YTL    L  GRG GE + LL DL  + 
Sbjct: 533 SEFKFKEGDGPGLVLHAETTDKILLFADNGRFYTLAGDRLPRGRGFGEPVSLLTDLPADI 592

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +I+T        K+LV +S G+  IV+    IA TR GK  L +  + +      V GD 
Sbjct: 593 EIITLLRG-VAGKMLVAASTGHGLIVDMQSAIAQTRSGKQILNLPGDARAVACCMVDGDM 651

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VA VG NRKLL F I ++PEM+RG+GV LQ +KDGG++DV  +   +GL+W    GR   
Sbjct: 652 VASVGVNRKLLAFPISELPEMTRGRGVILQRFKDGGLADVTVYHSDKGLSWQAGGGR--T 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+E D+  W+ KR G G L P GFPR  KF
Sbjct: 710 RTETDMSNWIAKRAGAGKLPPTGFPRPAKF 739


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/766 (34%), Positives = 424/766 (55%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N        +  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MKNLTEFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDS
Sbjct: 61  MTPDKPHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM ++ + +L  +D+D VDF   +++   EPVV P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +  + LIDNP+ + ++L+  + GPDFPTGGII+  RE I  +Y+ 
Sbjct: 181 GMATNIPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIM-GREGIKSAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA+  +E +  G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 240 GRGAIRIRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P +++  +F  + ++  F + M  L  G+ P+V+ L   L  +L
Sbjct: 300 DRMGMQIVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQ-PKVLNLRDALFYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  ++DE+I  IR        +  ++ +F 
Sbjct: 359 EHQKDVITRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +++ E  NLL     + ++L +       I  E+  +
Sbjct: 419 LSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLK 534
           KE ++       RRT   E+S  D     + +I +E + + I++ G+I+        + K
Sbjct: 479 KEKYNDP-----RRT---EISINDVNIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQK 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++A+  KE D ++      T   +L  +  GK Y L   N+     +  G AI  
Sbjct: 531 RGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVN 590

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++ ++ I        +D+   LL ++ KG        E  +  + G   L +   ++
Sbjct: 591 LLYISGDEKITAVIPVRSFDTEEYLLTITRKGVIKKTPLVEYGSTRKDGIIALSLDENDE 650

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KIC 706
           +  V    G + V +  +  K + F+ +++  M R  +GVR  S  +    +VI    I 
Sbjct: 651 LIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSMGRAARGVRGISLSEK--DEVIGIDTIE 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +    + + +  +        RGG G +  +   R+G  + 
Sbjct: 709 QGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVG 754



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 12/209 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLK 552
           +        A +     + E   + I+ +G I+         +      AL   E D L 
Sbjct: 593 YISGDEKITAVIPVRSFDTEEYLLTITRKGVIKKTPLVEYGSTRKDGIIALSLDENDELI 652

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +  + +++ + +GKA       + S       ++  I L+   +++     +   
Sbjct: 653 DVKLTNGKNEVIIGTKEGKAIRFAEEEVRSMGRAARGVRG-ISLSEKDEVIGIDTIEQGA 711

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENR 668
            +LVV+ KG        +     R GK  + +        +  +  V  GD + ++    
Sbjct: 712 DVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVGIKVVKPGDELMLITAEG 771

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            ++   +D I  M R  +GVRL    +  
Sbjct: 772 IIIRLDVDGISTMGRSTQGVRLMRLDEND 800


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 424/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  VK +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+E+G+    A+K
Sbjct: 6   QSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 AKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A LAL  NP+ISI +L+EYI GPDFPTG  I+  R  I ++Y+ GRG   +R
Sbjct: 186 HQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE  +G   I+V+E+PYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++
Sbjct: 245 AQTEIEEY-KGKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++L+ +++  + ++T F +N+  L     P+V+ L   L+ +L H+ +V+ 
Sbjct: 304 IELRRDANANVLLNNLYKQTALQTSFGINLLALV-EGQPKVLTLKECLEHYLGHQVQVIR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  ++DE+I++IR+       +  ++ +FSL+  Q  A
Sbjct: 363 RRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   L+A+  ++ ++L  G++    I  E+ EVKE F+   
Sbjct: 423 ILDMRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFNDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     S  +     + +I ++ + + +++ G+I+          +     +  
Sbjct: 482 ----RRTVI---SMNEDHLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRGGKGIQG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++     ++   IL  +  GK Y L    +        G  I  L+ +  ++
Sbjct: 535 MGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T      +D    L  ++  G A   + S      R G   + +  ++++  V    
Sbjct: 595 TISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHGVRLTD 654

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G    ++  ++   + F    +  M R   GV+  S  D     V+   I  E    +  
Sbjct: 655 GGQEVIIGTKHGMAIRFHETDVRLMGRTAGGVKGISLSDD--DHVVGMDILEENHQVLIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        +  RGG G        ++G  +S
Sbjct: 713 TENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVS 750



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 16/216 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +     +       ++  G  +  +  S        L A+  +  D L  
Sbjct: 590 IEQDETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRGGLFAITLRGDDELHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    +++ +  G A      +  L+     G      I L+ +  +V   + +  
Sbjct: 650 VRLTDGGQEVIIGTKHGMAIRFHETDVRLMGRTAGGVKG---ISLSDDDHVVGMDILEEN 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
            ++L+V+  G        E     R GK      +   +   + L V      + ++  +
Sbjct: 707 HQVLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVSLKVVSDEHDIMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++   ++ I    R  +GV L    +      + 
Sbjct: 767 GIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVA 802


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/736 (54%), Positives = 528/736 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD   A KK
Sbjct: 11  DGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPTTAHKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI++PE +  +L +++ GPDFPTGGI+++S ES+ E+YR GRG FRVRA
Sbjct: 191 NAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGRGAFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY + K RLIEK+AEL+  K++PLL D+RDESAEDVRIVL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAEDVRIVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++R++DP +LMES+F L+++E R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RS +R+  IDRR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEIQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E D L AEK +ID+LL S   QW  I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFDALTAEKAEIDALLASEPAQWKAIQAQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              A++E+EPITV++S +GWIR+LK H  DLS + FK  D+LKIA
Sbjct: 491 RRTTLASPPDVGGIDFTAALVEREPITVIVSTKGWIRALKGHVADLSGVAFKGDDTLKIA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               TT +ILLL+T+GK +TL A  L  GRG G+ ++L+ DL+   +IV A  Y    KL
Sbjct: 551 FPTETTQKILLLATNGKVFTLEASKLPGGRGFGDPVRLMADLDDGTEIVAALPYRPETKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+  S G  F+     ++ANTRKGK  L +  +    ++V   GDHVAVV   + LLIF 
Sbjct: 611 LIAGSDGRGFVAPADALVANTRKGKNVLGLDGDATAAVLVPADGDHVAVVNTEKLLLIFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           + ++ E++RGKGVRLQ  + G + D   FK+ +GL W D +      + + L  WLG R 
Sbjct: 671 VSEVAELARGKGVRLQRCRSGSLLDAHVFKLADGLPWQDGSAEGRLANVSVLEKWLGHRA 730

Query: 735 GVGSLVPKGFPRSGKF 750
            VG ++ + FP+  +F
Sbjct: 731 EVGLMMARSFPKFERF 746


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/762 (33%), Positives = 425/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    
Sbjct: 2   SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++
Sbjct: 300 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKD 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  IL+GL+IA  NID++I IIR+       K  ++ RFSL+E Q
Sbjct: 359 VITRRTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I++E + L+   + ++++L S ++    I  E+ E+K  +S
Sbjct: 419 AAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E  + +     + +I++E + + +++ G+I+          K     
Sbjct: 479 DE------RRTQIE--KQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++  L   T   +L  +T GK Y + A  +        G  +  ++ L 
Sbjct: 531 IQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T   +        L + +  G        +     + G   L +   +++    
Sbjct: 591 ADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  +  V ++   + F+   +  M R   GV+  S ++G ++  +C  I  E    
Sbjct: 651 ITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKAISLREGDVA--VCMDIAVEDEKL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +  N     +  RGG+G +  K   ++GK + +
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  L    ++++    + +  G ++              L AL+ +EGD L  A
Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+ ++ DG A      ++         ++  I L      V   +     KL
Sbjct: 650 KITYGDADIIFVTQDGNAIRFNETDVRPMGRTASGVKA-ISLREGDVAVCMDIAVEDEKL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVVS  G        E     R G   +     +K   VV  T     D + ++      
Sbjct: 709 LVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDELMLINNQGVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVI-----CFKICEGLTWIDSAG 716
           +  ++  I   SR   GV+L    +D  +  +        +  E +T +D + 
Sbjct: 769 IRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLDESE 821


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/756 (33%), Positives = 420/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G      +KKS
Sbjct: 8   GVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H+
Sbjct: 128 MSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHH 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+
Sbjct: 188 LGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+  
Sbjct: 247 VEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR
Sbjct: 307 VRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RF+L+E Q  AIL
Sbjct: 366 TEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +S     
Sbjct: 426 DMRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSD---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     S   +    + +I  E   V +++ G+I+          K     +  + 
Sbjct: 482 -TRRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  ++  T D IL  ++ GK +      +        G  I  L++++  + +
Sbjct: 539 TNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNIDKGEKV 598

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D     +  +  G       S+       G   + +  ++ +  V    GD
Sbjct: 599 TAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGD 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             + +   +  L+ F  D I  M R   GVR    +DG   +V+  +I E G   +    
Sbjct: 659 KQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPGQEILVVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 717 KGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A ++    +++   +  +  G  +              L A+  +E D L  
Sbjct: 592 IDKGEKVTAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   +I++ + DG        ++ S       ++  I L    ++V   + +   +
Sbjct: 652 VRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRG-IKLRDGDEVVGMEIVEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRK 669
           +LVV+ KG      E +    +R G     +   +K   M  V  V G + + ++  N  
Sbjct: 711 ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVAVKTVDGSEDIMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 771 LIRMDVNDISLIGRSTQGVRLIRLGDDELVATVA 804



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 66/189 (34%), Gaps = 18/189 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA  +RE  ++ S     G ++              +                  
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDD---------------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IRS+   +  +  +  ++GD +           IL+++  G        +       G  
Sbjct: 678 IRSMGRTAGGVRGIKLRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVG 737

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           ++ +   + N  +V     D +  +++++  G    ++ ++  +I  + +G   +++  +
Sbjct: 738 LKTMQITDKNGPMVAVKTVDGSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDD 797

Query: 648 EKMKLVVKV 656
           E +  V KV
Sbjct: 798 ELVATVAKV 806


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/735 (53%), Positives = 521/735 (70%), Gaps = 6/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I AM ++ LD G+ FKK 
Sbjct: 8   NVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y++LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTE+R
Sbjct: 68  ARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+G+DEDAVDFR TY+ ED+EPVV P  FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 LTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA+ LI +PE     LL+++ GPDFPTGG +VE R +++ +Y  GRG  RVRAR
Sbjct: 188 AAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W   ++  G+W IVVTEIPYQVQKSRLIE++A+L+  +++PLL DIRDES E VRIVL P
Sbjct: 248 WSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTERVRIVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DPD+LM S+F  +  E RF +NMNVL   R P+VM L  +L+ WL HR EVL RR
Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ AI RR+EIL+G L  +LN+DE+I IIR ED+PKP +++ F+LT+ Q +AILN+R
Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPALIAAFTLTDTQAEAILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E   L AE++ +D++L    ++W +I  EI    + F      G R
Sbjct: 428 LRSLRKLEEMEIRKEHKALTAERKALDAMLADPAKRWARIETEIEATAKTFG--GGPGAR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT    +        +A++E+EP+TV++S +GWIR+LK H+V  + L FKEGD LK  L
Sbjct: 486 RTT-ISGAVPVTEVAVEALVEREPLTVILSEKGWIRALKGHAVAEAELKFKEGDRLKALL 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              + DR+ + +T+G+ Y+L A +L  GRG G+AI+L++DL +  ++   F+ D   + L
Sbjct: 545 RCSSLDRVTVFATNGRVYSLRAADLPRGRGDGQAIRLMVDLGNEDEVAALFIADPEARYL 604

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V  + G  FI+  +E+ A  R GK  L V   ++  L  KV GDH+AV+G+NRKLL+F +
Sbjct: 605 VAGTDGRGFIIAGAELGAEKRTGKQILTVRPGQEAMLCRKVAGDHLAVIGQNRKLLVFPL 664

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +Q+PEM+RG GV LQ YKDGG++D   F +  GL+W     +   R+E  L  WLG RG 
Sbjct: 665 EQVPEMARGAGVILQKYKDGGLADAKAFTLASGLSWRLGDKQ---RTETRLAEWLGARGQ 721

Query: 736 VGSLVPKGFPRSGKF 750
            G L P GFPRSG F
Sbjct: 722 AGRLPPTGFPRSGTF 736


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/796 (33%), Positives = 409/796 (51%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G     
Sbjct: 2   TDLAKEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+
Sbjct: 122 YTEARMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID PE+ ++ L++YI GPDFPT GI +     I  +YR GRG  
Sbjct: 182 IPPHNLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGI-INGVGGIQLAYRTGRGRV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R+RA+  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D  
Sbjct: 241 RIRAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++ +++  + +E+ F +NM  L  G  PQ++ L  IL+ +L HRRE
Sbjct: 301 RIYIEVKRGESAEVVLNNLYQQTQLESVFGINMVALVDG-RPQLVNLKQILEAFLRHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------- 417
           V+ RR+ F ++    R  +L+GL +A  NIDE+I +I+  D P+                
Sbjct: 360 VVTRRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLV 419

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     R+ LTE Q   IL +RL  L  LE+ ++  E   
Sbjct: 420 GALLAATGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQ 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L   +     I  E+ E+K  F        RR+   E+  +++      
Sbjct: 480 LLETIRALIEILEDPEVLLQVIRTELNELKAEFGD-----DRRS---EIRASEEDLDILD 531

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  E + V +S+ G+         R+ K      SA   K+ D +      +T D +L 
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLT 591

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ++ GK + LP   L        G  I   I L   + +        Y     +   +  
Sbjct: 592 FTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGFFVFFATRN 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G       +E      +GK  + +   + +  V    G   V +   N K + F   ++ 
Sbjct: 652 GTVKKTPLTEFAFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            M R   GVR     +G   +V+   + +G    + ++ R Y +           RG  G
Sbjct: 712 AMGRTATGVRGIRLAEG--EEVVSLVVPDGEGDILTASERGYGKRTPLSEYPKKGRGTQG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G+ + +
Sbjct: 770 VIAIQTSERNGRLVGA 785



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L      +       +  G ++                A++  +GD+L
Sbjct: 622 IPLEEGEQVQAVLPVREYAEGFFVFFATRNGTVKKTPLTEFAFRLARGKIAINLDDGDNL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ++L +++GKA       + +       ++  I L   +++V+  V D  
Sbjct: 682 VGVALTDGGRDVMLFASNGKAVRFDESEVRAMGRTATGVRG-IRLAEGEEVVSLVVPDGE 740

Query: 612 CKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTGDH-VAVVGEN 667
             +L  S +G       SE     R  +G   ++ S    ++   ++++  H V ++ + 
Sbjct: 741 GDILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDG 800

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
             L+     +I ++ R  +GV L    +G     +
Sbjct: 801 GTLVRTRASEISQVGRNTQGVTLIRLGEGESLQAV 835


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/756 (34%), Positives = 421/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G     A+KKS
Sbjct: 8   GVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H 
Sbjct: 128 MSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+
Sbjct: 188 LGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYETGRGSIIIRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I++ E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+  
Sbjct: 247 VEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR
Sbjct: 307 VRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RFSL+E Q  AIL
Sbjct: 366 TEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFSLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +I++E   L    +++ ++L   ++  + I  EI E+KE F+     
Sbjct: 426 DMRLVRLSGLEREKIEAEYQELQVLIDELKAILADEEKIVDIIRTEILELKERFND---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     S   +    + +I  E   V +++ G+I+          K     +  + 
Sbjct: 482 -TRRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  ++  T D IL  ++ GK +      +        G  I  L+++   + +
Sbjct: 539 TNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEFGRTAKGLPIVNLLNIEKGEKV 598

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D     +  +  G       S+       G   + +  ++ +  V    G+
Sbjct: 599 TAMIRVASFDDDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGE 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             V +   +  L+ F  D I  M R   GVR    +DG   +V+  +I E G   +    
Sbjct: 659 KQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPGQEILVVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 717 KGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVA 752



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      A ++ A  + +   +  +  G  +              L A+  +E D L  
Sbjct: 592 IEKGEKVTAMIRVASFDDDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   ++++ + DG        ++ S       ++  I L    ++V   + +   +
Sbjct: 652 VRLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRG-IKLRDGDEVVGMEIVEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRK 669
           +LVV+ KG      E +    +R G     +   +K   M  V  V G + + ++  N  
Sbjct: 711 ILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVAVKTVDGSEDLMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 771 LIRMDVNDISLIGRSTQGVRLIRLGDDELVATVA 804



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + E   ++ +  G         IRS+   +  +  +  ++GD +      
Sbjct: 646 DDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDGDEVVGMEIV 705

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                IL+++  G        +       G  ++ +   + N  +V     D +  L+++
Sbjct: 706 EPGQEILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVAVKTVDGSEDLMLI 765

Query: 618 SSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +  G    ++ ++  +I  + +G   +++  +E +  V KV 
Sbjct: 766 TINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKVE 807


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/766 (33%), Positives = 423/766 (55%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+        R T    S  +     + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE------RRTEIVTSGLET-IEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +        G  I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +  V+  +I E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDV--VVGMEILE 706

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +    + Y +           RGG G    K    +G+ ++
Sbjct: 707 EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +       E      +  G  +           +  L AL  +E D L 
Sbjct: 591 EVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T +I++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 651 GVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKG-ITLTDDDVVVGMEILEEES 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG        E    +R GK         +  ++  V    G+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            L+   I+ I    R  +GVRL    +      +  
Sbjct: 770 VLIRMDINDISITGRVTQGVRLIRMAEEEHVATVAL 805


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/757 (50%), Positives = 529/757 (69%), Gaps = 30/757 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +LR AL +RYL YALSTI  RA+PD RDG KPVHRRI++AM E+ L     F+KSA+I G
Sbjct: 50  TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKLASKGGFRKSAKISG 109

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT  A
Sbjct: 110 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTAAA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+G++E+AVDFR+ Y+    EPVV P+ FPNLLANG+SGIAVGMAT+IP HN++E+ 
Sbjct: 170 EALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLEELI 229

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A L LI  P+   E L+ YI GPDFPTGG+IVE +E+I E+YR G+GGFR+R ++ VE+
Sbjct: 230 GACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYRTGKGGFRLRCKYEVED 289

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +GRG W ++VTEIPYQVQKSRLIEK+AE+I  K++P+L D+RDESAED+RIVL PK++++
Sbjct: 290 LGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDESAEDIRIVLEPKSKNV 349

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D ++LM  ++  S++ETRF LNMNVL  G  P+V  L  +L+ +L HRR+VL RRS+ RM
Sbjct: 350 DVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLIRRSTHRM 409

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------------- 419
             ID R+E+L+G +IA+LN+D +I IIR ++ PK  +++                     
Sbjct: 410 VKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAEDWGKTHVRAMDEADYVSPLT 469

Query: 420 ------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    LT+ Q +AILN+RLRSLR+LEE ++  E D L+ E+  ++ LL+S   QW 
Sbjct: 470 ALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLERAGLEDLLDSDDLQWK 529

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            IA ++RE +++F  ++  G RRT F E    +     +AMI+KEP+TVV S  GWIR++
Sbjct: 530 TIAEQLRETRKLFGSNSKGGARRTAFAEAGVIE-DVPLEAMIDKEPVTVVCSKMGWIRAM 588

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             H      L FK+GD  +   HA TTDR+L+  ++G+ YTL A  L  GRG GE ++L+
Sbjct: 589 TGHIDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTLGASTLPGGRGMGEPLRLM 648

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +DL +  +IV  F++ +  +L++VSS G+ FIV E ++IA TR GK  L V  + + K+ 
Sbjct: 649 VDLPNEAEIVALFIHRAGNRLMIVSSAGDGFIVPEDDVIAQTRAGKQALNVKGDVRAKVC 708

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
             V GDHVA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W+D
Sbjct: 709 STVIGDHVACVGENRKVLLFPLDELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWLD 768

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            AGR   R++ +L  W  KR G G + P+GFPR  +F
Sbjct: 769 PAGR--TRTQTELGEWAAKRAGAGRMAPRGFPRDNRF 803


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/756 (33%), Positives = 420/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK +++   +E  +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G      +KKS
Sbjct: 8   GVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D +D+ D Y+  + EP+V PS++PNLL NG +GIAVGMAT+IP H+
Sbjct: 128 MSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHH 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +AL +NP I+ E+L+E I GPDFPTGG+I+  R  I  +Y  GRG   +RA+
Sbjct: 188 LGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES      V+  
Sbjct: 247 VEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++++ +++  + M++ F +NM  L  G+ P+V+ L  +L  +L H++ ++ RR
Sbjct: 307 VRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIR     ++ KP ++ RF+L+E Q  AIL
Sbjct: 366 TEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +I++E   L     ++ ++L    +  + I  EI E+K+ +S     
Sbjct: 426 DMRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSD---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     S   +    + +I  E   V +++ G+I+          K     +  + 
Sbjct: 482 -IRRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  ++  T D IL  ++ GK +      +        G  I  L++++  + +
Sbjct: 539 TNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPEYGRTAKGLPIVNLLNIDKGEKV 598

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D     +  +  G       S+       G   + +  ++ +  V    GD
Sbjct: 599 TAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLISVRLTDGD 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             + +   +  L+ F  D I  M R   GVR    +DG   +V+  +I E G   +    
Sbjct: 659 KQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPGQEILVVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +  ++    L  RGGVG    +   ++G  ++
Sbjct: 717 KGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 77/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A ++    +++   +  +  G  +              L A+  +E D L  
Sbjct: 592 IDKGEKVTAMIRVGSFDEDAYFIFTTKTGITKRTPVSQFANIRTNGLIAISLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   +I++ + DG        ++ S       ++  I L    ++V   + +   +
Sbjct: 652 VRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRG-IKLRDGDEVVGMEIVEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRK 669
           +LVV+ KG      E +    +R G     +   +K   M  V  V G + + ++  N  
Sbjct: 711 ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVAVKTVDGSEDLMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   ++ I  + R  +GVRL    D  +   + 
Sbjct: 771 LIRMDVNDISLIGRSTQGVRLIRLGDEELVATVA 804



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA  +RE  ++ S     G ++              +                  
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDD---------------- 677

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IRS+   +  +  +  ++GD +           IL+++  G        +       G  
Sbjct: 678 IRSMGRTAGGVRGIKLRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVG 737

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           ++ +   + N  +V     D +  L++++  G    ++ ++  +I  + +G   +++  E
Sbjct: 738 LKTMQITDKNGPMVAVKTVDGSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDE 797

Query: 648 EKMKLVVKVT 657
           E +  V KV 
Sbjct: 798 ELVATVAKVE 807


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 412/763 (53%), Gaps = 35/763 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++      +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+AAA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN++E+ +  + LIDNP+ +++ L+  I GPDFPTGG+I+  RE I ++Y  GRG
Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES   
Sbjct: 241 SITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRR 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R + P +++ ++F  + ++T F +    L  G  P+V+ L   L+ +L H+
Sbjct: 301 GMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGE-PKVLTLRETLEHYLNHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+    D+ +  ++S F L+E
Sbjct: 360 RDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   L+    ++ ++L   K   + I  EI E+KE 
Sbjct: 420 EQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEIKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT             ++ +I    + + I++RG+I+          +   
Sbjct: 480 FGD-----DRRTRIVNAEG---EISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQRRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  L++
Sbjct: 532 RGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVNLLN 591

Query: 596 LNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +   + +       S          L   + +G       +E     + G   + +  ++
Sbjct: 592 IEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI   + 
Sbjct: 652 DLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEG--DEVIAMDVA 709

Query: 707 EGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           E     +    R Y +           RGG G       P++G
Sbjct: 710 EDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++              L A++ ++ D L        T  I++++ +G A   
Sbjct: 618 FFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRF 677

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           P  ++   R  G A   +  I L+   +++   V +    +LVV+S+G       SE  A
Sbjct: 678 PETDV---RPMGRAATGVKGISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRA 734

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            +R GK    +     +   +++ +    D + +V +    +   +  +  +SR  +GVR
Sbjct: 735 QSRGGKGIKTLNCTPKNGHAIEMCMVTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVR 794

Query: 689 LQSYKDGGISDVICFKICEG 708
           L +  +G     +   + + 
Sbjct: 795 LINVDEGVEVASVSRVVKDD 814


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/763 (34%), Positives = 410/763 (53%), Gaps = 35/763 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++      +  V +   L   +L YA+S I  RAIPD+RDG KPVHRRI++AM E G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKS+RIVG+V+GK HPHGD +VY++LVRLAQ F  RYPLI G GNFG+IDGD+AAA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+RM+ +A  +L+ ++++ VDF   Y+E++ EPVV PS+FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN++E+ +  + LID+P+ +++ L+  I GPDFPTGG+I+  RE I ++Y  GRG
Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA    EE+  G   IVVTEIPYQ  K+R++EKIAEL   K+I  + D+RDES   
Sbjct: 241 SITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRR 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R + P +++ ++F  + ++T F +    L  G  P+V+ L   L+ +L H+
Sbjct: 301 GMRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGE-PKVLTLRETLEHYLNHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           R+V+ RR+ + +   + R  IL+GL IA  ++DE+I++IR+    D+ +  ++S F L+E
Sbjct: 360 RDVVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   L     ++ ++L   K     I  EI E+KE 
Sbjct: 420 EQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEIKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT             ++ +I    + + I++RG+I+          +   
Sbjct: 480 FGDE-----RRTRIVNAEG---EISEEDLIPVHDVVIAITHRGYIKRLPLSTYHSQRRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             ++ ++  E D +       T D +L  +  G+ Y + A ++     +  G  I  L++
Sbjct: 532 RGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVPEFGRQARGTPIVNLLN 591

Query: 596 LNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +   + +       S          L   + +G       +E     + G   + +  ++
Sbjct: 592 IEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +  V    G   + +V  N   + F    +  M R   GV+  S  +G   +VI   + 
Sbjct: 652 DLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMGRAATGVKGISLSEG--DEVIAMDVA 709

Query: 707 EGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           E     +    R Y +           RGG G       P++G
Sbjct: 710 EDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNG 752



 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++              L A++ ++ D L        T  I++++ +G A   
Sbjct: 618 FFATRQGIVKKTPLAEYSNVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRF 677

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           P  ++   R  G A   +  I L+   +++   V +    +LVV+S+G       SE  A
Sbjct: 678 PETDV---RPMGRAATGVKGISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRA 734

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            +R GK    +     +   +++ +    D V +V +    +   +  +  +SR  +GVR
Sbjct: 735 QSRGGKGIKTLNCTPKNGHAIEMCMVTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVR 794

Query: 689 LQSYKDGGISDVICFKICEG 708
           L +  +G     +   + + 
Sbjct: 795 LINVDEGVEVASVSRVVKDD 814


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/766 (33%), Positives = 423/766 (55%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+        R T    S  +     + +IE+E I V +++ G+++          K
Sbjct: 476 KERFNDE------RRTEIVTSGLET-IEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +        G  I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  +  V+  +I E
Sbjct: 649 LMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDV--VVGMEILE 706

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +    + Y +           RGG G    K    +G+ ++
Sbjct: 707 EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVA 752



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +       E      +  G  +           +  L AL  +E D L 
Sbjct: 591 EVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALGLREDDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T +I++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 651 GVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKG-ITLTDDDVVVGMEILEEES 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG        E    +R GK         +  ++  V    G+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            L+   I+ I    R  +GVRL    +      +  
Sbjct: 770 VLIRMDINDISITGRVTQGVRLIRMAEEEHVATVAL 805


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/759 (33%), Positives = 419/759 (55%), Gaps = 30/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E VK VS+   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +
Sbjct: 1   MSERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM++++  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG+SGIAVGMAT+IP
Sbjct: 121 EARMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L L+ +P+++I +L+EY+ GPDFPTG  I+  R  I ++Y  GRG   +
Sbjct: 181 PHQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQII-GRGGIRKAYETGRGSITL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + D+RDES      +
Sbjct: 240 RAKAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++  + ++T F +NM  L  G+ P+V+ L   L+ +L H++ V+
Sbjct: 300 VIEVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQ-PKVLNLKQCLQHYLDHQKIVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+GL IA  ++DE+I +IR     D  K  ++++F L+E Q  
Sbjct: 359 RRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ E + L+     + ++L   ++    I  E+ E+KE F+  
Sbjct: 419 AILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFNDY 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT    V+   +    + +I +E I V +++RG+I+          +     + 
Sbjct: 479 -----RRTEI--VNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRGGRGIQ 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            ++  E D ++  +   T D +L  +  GK Y      +   S    G  I  L+++  +
Sbjct: 532 GMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAKGIPIVNLLNIEKD 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I T      +     L   + +G A     S        G   + +   +++  V   
Sbjct: 592 EVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDELISVKLT 651

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWID 713
            G  H+ V  +N  L+ F    +  M R   GV+  +   G   +V+  +   G    + 
Sbjct: 652 DGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSG--DEVVGMESLNGDEEILI 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G  ++
Sbjct: 710 VTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVA 748



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E        +      ++      + +G  +           +  L A+H  EGD L  
Sbjct: 588 IEKDEVINTVIAIEQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLIAIHLHEGDELIS 647

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ + +G     P  ++ S       ++  I L    ++V     +   +
Sbjct: 648 VKLTDGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKA-ITLCSGDEVVGMESLNGDEE 706

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRK 669
           +L+V+  G       SE    +R GK      +   + + + +      + + ++  +  
Sbjct: 707 ILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTVTGEEDLMLMTASGV 766

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++  ++  I  M R  +GV+L    +    + + 
Sbjct: 767 MIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVA 800



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  + A+    GD +      +  + IL+++ +G     PA         G+ 
Sbjct: 674 VRSMGRTAAGVKAITLCSGDEVVGMESLNGDEEILIVTRNGYGKRTPASEYRIQSRGGKG 733

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           I+       N D+V          L+++++ G    +  S+  I+    +G   +++  E
Sbjct: 734 IKTCNITEKNGDVVAVKTVTGEEDLMLMTASGVMIRMAVSDISIMGRNTQGVKLIRLDEE 793

Query: 648 EKMKLVVKVT 657
            + + V  V 
Sbjct: 794 NEQEYVATVA 803


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/755 (33%), Positives = 415/755 (54%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSA
Sbjct: 9   IINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ VDF   Y+ E+SEPVV P+++PNLL NG  GIAVGMAT+IP HN+
Sbjct: 129 SKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ GRG   +RA+ 
Sbjct: 189 GEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+G     I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES      V+   
Sbjct: 248 TIEEIGN-KARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L H+ EV+ RR+
Sbjct: 307 RRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNE-PKILNLKDVLYHYLKHQVEVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  ++DE+IA+IR+    +        RFSLT  Q  AIL+
Sbjct: 366 EFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQSQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+KE F+      
Sbjct: 426 MRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISEELNELKERFAD----- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  +++ L + +I +E + + +++ G+I+          K     +  +  
Sbjct: 481 DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++     ++   +L  +  GK Y + A  +   S    G  I  LI +   + I 
Sbjct: 538 KDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESIN 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +     L   +  G        +     + G   + +  ++ +  V    G  
Sbjct: 598 AVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQ 657

Query: 661 VAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
             ++G      + F    +  M R   GV+  +  +     VI   I +  L  +    +
Sbjct: 658 EMIIGTAQGMSIRFPESDVRSMGRSATGVKGINLDES--DAVIGMDIVDTSLDILIVTAK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +    +   +  RGG G        ++G  + 
Sbjct: 716 GYGKRTPVVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +      ++      +  G I+              L A++ +E D+L
Sbjct: 588 IQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDAL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +++ +  G +   P  ++ S       ++  I+L+ +  ++   + D++
Sbjct: 648 IEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKG-INLDESDAVIGMDIVDTS 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++KG        +    +R GK    ++  +K   VV +    T + + ++  +
Sbjct: 707 LDILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKTEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  S+ +I  M R  +GVRL + +D      +C
Sbjct: 767 GTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVC 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 2/130 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  +  ++  E D++       T+  IL+++  G     P  +       G+ 
Sbjct: 676 VRSMGRSATGVKGINLDESDAVIGMDIVDTSLDILIVTAKGYGKRTPVVDYRIQSRGGKG 735

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+ +   + N  +V   V  +   L+++++ G        EI    R   G   + +  +
Sbjct: 736 IKTINVTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDD 795

Query: 648 EKMKLVVKVT 657
           + +  V +  
Sbjct: 796 DSVATVCRAN 805


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 424/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKS
Sbjct: 8   RVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ +++D +D++D Y+  + EPVVFP++FPNLL NGTSGIAVGMAT+IP H+
Sbjct: 128 MSKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHH 187

Query: 196 VQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E  +A LA+  NP+I+I++++E ++ GPDFPT G I+  R  I ++Y  G+G   +RA
Sbjct: 188 LGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQIL-GRSGIRKAYETGKGSITIRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+       I+VTE+PYQV K++LIEKIAEL+  K++  + D+RDES  +   ++ 
Sbjct: 247 KLNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRIVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++ +++  + ++T F +NM  L  G+ P+V+ +   L  +L H++ ++ R
Sbjct: 307 ELRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQ-PRVLNIKQCLSYYLEHQKVIIKR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL IA  ++DE+I +IR+    D  +  ++ RF L+E Q  AI
Sbjct: 366 RTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMERFKLSEKQAQAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I+ E   L A  E++ ++L   ++    I  E+ E+KE + +   
Sbjct: 426 LDMRLQRLTGLEREKIEDEYKELQALIEELKAILADEEKVLEIIREELTEIKEKYKE--- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT    V+        + +I +E I + ++++G+I+          K     +  +
Sbjct: 483 --DRRTEI--VAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPASTYRTQKRGGRGIQGM 538

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              E D ++  +   T D IL  +  GK Y      +   S    G  I  L+ +   + 
Sbjct: 539 GTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTAKGIPIINLLQVEKGEW 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +        +D    L   +  G A      +     + G   + +  E+++  V    G
Sbjct: 599 VNAVISVNQFDEEAYLFFTTKHGIAKRTSLEKFRNIRKGGLIAVGLREEDELISVRLTDG 658

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSA 715
              + +  +N  L+ F   QI  M R   GV+  S +  G   V+  +I E G   +   
Sbjct: 659 QKEMMIATKNGYLIRFEETQIRSMGRTAAGVKGISLR--GDDVVVSMEIIEPGSKILHVT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  ++       RGG G    K   ++G  ++
Sbjct: 717 NKGFGKQTDESEYRRINRGGKGVFTCKLDEKTGNVVA 753



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      A +     ++E      +  G  +              L A+  +E D L  
Sbjct: 593 VEKGEWVNAVISVNQFDEEAYLFFTTKHGIAKRTSLEKFRNIRKGGLIAVGLREEDELIS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ + +G         + S       ++  I L  +  +V+  + +   K
Sbjct: 653 VRLTDGQKEMMIATKNGYLIRFEETQIRSMGRTAAGVKG-ISLRGDDVVVSMEIIEPGSK 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           +L V++KG     +ESE     R GK       +EK   +  V  V GD  + ++     
Sbjct: 712 ILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDEKTGNVVAVKAVNGDEDLMLITIAGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   +  I +  R  KGV L   +DG     + 
Sbjct: 772 LIRIQVQDISQTGRNTKGVHLIRLQDGEEVATVT 805


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 425/766 (55%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MNEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L
Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLEHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+        R T    +  +     + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFNDE------RRTEIVTAGLET-IEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   E D ++  +   T D IL  S  GK Y      +        G  I  
Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +++   L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDE 648

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    ++  +N  L+ F    + EM R   GV+  +  D  +  V+  +I E
Sbjct: 649 LMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDV--VVGMEILE 706

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +    + Y +           RGG G    K    +G+ ++
Sbjct: 707 EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVT 752



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +       E      +  G  +           +  L AL  +E D L 
Sbjct: 591 EVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T ++++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 651 GVRLTDGTKQMIIGTKNGLLIRFPETDVREMGRTAAGVKG-ITLTDDDVVVGMEILEEES 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+ KG        E    +R GK         +  ++  V    G+  + ++  + 
Sbjct: 710 HVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVTVKATKGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            L+   I+ I    R  +GVRL    +      +  
Sbjct: 770 VLIRMDINDISITGRVTQGVRLIRMAEEEHVATVAL 805


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/755 (34%), Positives = 415/755 (54%), Gaps = 30/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM  +G+      +KS
Sbjct: 3   KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+ + HPHGD  VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+ AA RYTEAR
Sbjct: 63  AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN
Sbjct: 123 LSRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNP++S+E+L+ Y+ GPDFPTGGII+  RE I  +Y  GRGG  VR +
Sbjct: 183 LGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIIL-GREGIRTAYATGRGGIVVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E  G     IV+TEIPYQV K+RL+E+IAEL+  KR+  + D+RDES      V+  
Sbjct: 242 ATIERKGN-RNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  DP +++  ++  + +E  F + M  L  G+ P+V+ L  +++ +L H++EV+ RR
Sbjct: 301 LKRDADPQVILNRLYKHTQLEETFGVIMLALVNGQ-PEVLSLKEMMRHYLNHQKEVVVRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
             + ++    R+E+++GL++A  NID ++ +I+        K  ++S F LTE Q  AIL
Sbjct: 360 CQYELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLISTFGLTEKQAQAIL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++ +EL  L  +   ++ +L    + W  +  E++ +KE F+     
Sbjct: 420 DMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADP--- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +     +    + +I  E + V++S++G+I+                ++ L 
Sbjct: 477 --RRTLIVDEEVTYR---PEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTGLK 531

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            K+GD ++    A+T D +L  ++ G+ + L    +      G G A+  L+ L+  + +
Sbjct: 532 LKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQV 591

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-LVVKVTG 658
                   +     +L+V+ +G    +   E+    R G   + +   +++    +    
Sbjct: 592 TAIIPVADFSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAALPGPE 651

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + V +V E  K + F   ++  M R  +GVR    + G     +      G   + +AG 
Sbjct: 652 EEVLLVTEGGKAIRFRAAEVRPMGRAARGVRGMKLRPGDRVAGLAVLDGAGEVLLVTAG- 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        L  RGG+G         SG  + 
Sbjct: 711 GYGKRVKTADFPLQGRGGMGVTALAVSKTSGPVVG 745



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIAL 555
                 A +  A   ++   ++++ +G ++ L          V L+A+    GD L  A 
Sbjct: 587 PEEQVTAIIPVADFSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAA 646

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                + +LL++  GKA    A  +         ++ +  L     +    V D   ++L
Sbjct: 647 LPGPEEEVLLVTEGGKAIRFRAAEVRPMGRAARGVRGM-KLRPGDRVAGLAVLDGAGEVL 705

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLL 671
           +V++ G    V+ ++     R G     ++    S   + + V    + + +      L 
Sbjct: 706 LVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTSGPVVGVEVVRDEEEILLASAAGWLT 765

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
              + ++P M R  +GV L   +      V   KI E 
Sbjct: 766 RLKVKEVPVMGRQARGVVLMRLQPED-RLVALAKIGED 802


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/756 (34%), Positives = 422/756 (55%), Gaps = 32/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++   +   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++AM E+G+     +KKS
Sbjct: 8   RLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L++G GNFG+IDGDSAAA RYTE++
Sbjct: 68  ARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMRYTESK 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +++ +++D VDF D Y+  + EP V PS+FPNLL NGTSGIAVGMAT+IP H 
Sbjct: 128 MSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LAL  NP+ISI +L+EYI GPDFPTGG I+  R  I ++Y  GRG   VRA+
Sbjct: 188 LGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEIL-GRSGIRKAYSTGRGSITVRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E  +G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + ++RD S  +   ++  
Sbjct: 247 TEIVE-NKGKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMNIVID 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ ++F  + ++T F +NM  L  G  P+V+ L   L+++LAH+ EV+ RR
Sbjct: 306 VRRDANPNVILNNLFKQTALQTSFGINMLALVNG-RPEVLNLKQTLEQYLAHQVEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  +IDEIIA+IR  D     +  ++ RF L+ +Q  AIL
Sbjct: 365 TQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFELSYDQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E  ++LA   ++ ++L S ++  + I  EI  +KE F+     
Sbjct: 425 DMRLQRLTGLERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAIKEKFNDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     S +++    + +I ++ I + I++ G+I+          K     +  + 
Sbjct: 482 --RRTVI---SASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQKRGGKGVQGMG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++     +T   +L+ +  GKAY L    +        G     L+  +  + I
Sbjct: 537 TNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAINLLPFDPGETI 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            T      +D    L  V+  G A   + S      + G   + +   + +  V    G+
Sbjct: 597 STVIPIECFDDDSYLFFVTEHGIAKRTKLSAFANIRKGGLFAINLREGDSLHGVRLTDGN 656

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
             V +  +    + F    +  M R   GV+  +  +     V+  + + E  + +    
Sbjct: 657 REVMIGTKQGMAIRFPETDVRLMGRTAGGVKGITLSEN--DGVVGMEVVDENQSVLVVTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        +  RGG G        ++G  +S
Sbjct: 715 KGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVS 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     + +     ++  G  +  K  +        L A++ +EGDSL   
Sbjct: 591 DPGETISTVIPIECFDDDSYLFFVTEHGIAKRTKLSAFANIRKGGLFAINLREGDSLHGV 650

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   +++ +  G A   P  +  L+     G      I L+ N  +V   V D   
Sbjct: 651 RLTDGNREVMIGTKQGMAIRFPETDVRLMGRTAGGVKG---ITLSENDGVVGMEVVDENQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV+ KG        E    +R GK      +   +   + L +    D + +V  N 
Sbjct: 708 SVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKNGPLVSLKMVADEDDIMIVTANG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++  ++D I    R  +GV L    +G     + 
Sbjct: 768 IIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVA 802


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/793 (33%), Positives = 409/793 (51%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KK
Sbjct: 6   KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL++N E++I++L++ I GPDFPTGGI +  R  I+++YR GRG   VRA
Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGI-INGRSGILDAYRTGRGKIYVRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I+VTE+PY V K+RL+EKIAEL+  K+I  +  +RDES +D   V+
Sbjct: 245 RTEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++  + M+  F +NM  L  G+ P+ + L  IL  ++ HRREV+ 
Sbjct: 305 IELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQ-PKTLNLKEILAAFIDHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------- 419
           RR+ F ++    R  IL+GL IA  NID +I +I+N   P                    
Sbjct: 364 RRTVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEM 423

Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + LTE Q  AIL+LRL  L  LE  +I  E   LL 
Sbjct: 424 LERAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLG 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++  +L S ++    I  E+  VK  F        RRT   E+  A      + +I 
Sbjct: 484 EIAELLRILASPERLMEVIREELEFVKSQFGDK-----RRT---EIQAASIEINMEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E + V +S+ G+++          +      +A   K+ D ++  L A+T D IL  ST
Sbjct: 536 PEDVVVTLSHEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFST 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G  I  L+ L+ N+ I        YD    +   +  G  
Sbjct: 596 QGKVYWLKVYQLPEASRTARGRPIINLLPLDENERITAILPVKSYDDDKYVFFATGDGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              E S        G   + ++  + +  V    G+  + +  +  K++ F+   +  M 
Sbjct: 656 KKTELSAYSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R   GVR      G    V+   + + G   + +    Y +  +     +  R  +G + 
Sbjct: 716 RTATGVRGMKL--GETDKVVSLIVPQNGGAILTATENGYGKRTDLAEYPVKSRATLGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK + +
Sbjct: 774 IQVTERNGKVVGA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L     + +      +  G ++  +  +        + A++  EGDSL   
Sbjct: 626 DENERITAILPVKSYDDDKYVFFATGDGTVKKTELSAYSRPLSSGIRAINLNEGDSLIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ S       ++ +  L     +V+  V  +   +
Sbjct: 686 AITDGNSEIMLFSDAGKVVRFNESDVRSMGRTATGVRGM-KLGETDKVVSLIVPQNGGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G     + +E    +R     + +     + + +  +     D + ++     L
Sbjct: 745 LTATENGYGKRTDLAEYPVKSRATLGVISIQVTERNGKVVGAIQVDESDEIMLITNAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEG 708
           +   + ++  + R   GVRL    +D  +  +      EG
Sbjct: 805 VRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPEG 844


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/790 (34%), Positives = 420/790 (53%), Gaps = 63/790 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P+ S+E L+E I GPDFPT  I +  R  I+E YR G+G   +RA
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAI-INGRAGIIEGYRTGKGRVVIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+
Sbjct: 245 RTEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + L+E Q  AIL LRL  L  LE+ +I +E + LL 
Sbjct: 424 LEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLN 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 484 LIKELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA H K+ D ++  + A T D +L  S 
Sbjct: 536 EEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 596 HGKLYWLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M 
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +       +      G T + +    Y +  +     +  RGG G +  
Sbjct: 716 RTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISI 775

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 776 QVTERNGKVV 785



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +  T  GR       ++  +   A L     +      + + +G ++ +   
Sbjct: 602 LKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLN 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+  +E DSL           I+L +  GK        +         +
Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  I +  +Q + +  V D +   +L  +  G        E   + R G+  + +   E+
Sbjct: 722 RG-IRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              VV+       D   ++ +   L+ F ++++  + R  +GVRL +   G
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSG 831



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 664 SRPRSNGIIAVDLEEDDSLVGVDITDGAR-------DIMLFTDAGKVIRFDESKV----- 711

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSG 583
               R +   +  +  +  ++  ++K  +    +   +L +T+   GK   +    + SG
Sbjct: 712 ----RPMGRTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRV-SG 766

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           RG G+ +  +     N  +V +       + ++++ KG     + +E+    R   G   
Sbjct: 767 RG-GQGVISIQVTERNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRL 825

Query: 642 LKVSSEEKMKLVVKV 656
           + VSS E +  + K+
Sbjct: 826 INVSSGETVVGMQKI 840


>gi|332971210|gb|EGK10173.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437]
          Length = 813

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/758 (31%), Positives = 412/758 (54%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ +  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M E+G+     ++
Sbjct: 4   EQRINEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYTMHELGMTSDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG V+   HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RYTE
Sbjct: 64  KSANVVGNVLASYHPHGDGAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM  +   +L+ ++++ +DF   Y+    EPVV P++FPNLL NG++GIAVGMAT+IP 
Sbjct: 124 ARMAPITRELLRDIEKETIDFTPNYDGRLEEPVVLPARFPNLLVNGSAGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA+I NPEI+I++L+E+I GPDFPT G+I+  R+ I ++YR GRG  +++
Sbjct: 184 HNLTEVIDGLLAMIQNPEITIDELMEHIKGPDFPTAGLIL-GRDGIKKAYRTGRGSIKMQ 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IVV E+PYQV K++L+EKIAEL+  K+I  + D+RDES  +   V+
Sbjct: 243 AKTRIEEANNGKMRIVVEELPYQVNKAKLVEKIAELVRDKKIDGITDLRDESDRNGMRVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +L+ +++  ++++T F +NM  L  G+ P V+ L  +L  +L H+ EV+ 
Sbjct: 303 IELRRDVNPKVLLNNLYKQTNLQTSFGVNMLALVDGK-PLVLNLKQVLHHYLEHQVEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I +IR      + +  ++ +F L++ Q  A
Sbjct: 362 RRTQFDLRKAEERAHILEGLRIALDHIDEVIELIRGSRTTQEARDGLMEKFGLSDKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E D LL    ++ ++L S ++    +  E+ EV++ +    
Sbjct: 422 ILDMRLQRLTGLEREKIETEYDELLKTIAELKAILASEEKIRGVVRDELTEVRDKYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+              + +I ++ +T+++++RG+I+          +     +S 
Sbjct: 481 ----RRSRI---MLNTGDIADEDLIPEDEVTILMTHRGYIKRMLLSGYRAQRRGGRGVSG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++     ++ + +L  S  GK Y + A  +   S    G  I  LI ++  +
Sbjct: 534 MGTREDDFVQHLFVTNSHNYLLFFSNKGKVYRMKAYEVPELSRTARGTPIINLIQIDQGE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L   +  G        E     R G   + +   +++  V    
Sbjct: 594 YIEAVIPVREFSPDSYLFFGTKFGVVKKTPLEEFGHIRRNGLFAINLREGDELVGVRLTD 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G+  + +       + F    + +M R   GV+  +   G   +V+  ++ +     +  
Sbjct: 654 GEQEIMLGTRRGMSIRFPEQDVRQMGRTATGVKGIAL--GKDDEVVGMEVVDPEREVVVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +           RGG G          G  + 
Sbjct: 712 TSKGYGKRTPLSEYRTQSRGGKGIKAQNVTKTKGHVVG 749



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 18/230 (7%)

Query: 483 KEIFSKSTDLGRRR-TTFCEVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSH 536
            + +         R T    + + D+    +A+I       +      +  G ++     
Sbjct: 566 MKAYEVPELSRTARGTPIINLIQIDQGEYIEAVIPVREFSPDSYLFFGTKFGVVKKTPLE 625

Query: 537 SVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L A++ +EGD L           I+L +  G +   P  ++         +
Sbjct: 626 EFGHIRRNGLFAINLREGDELVGVRLTDGEQEIMLGTRRGMSIRFPEQDVRQMGRTATGV 685

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----S 646
           +  I L  + ++V   V D   +++VV+SKG       SE    +R GK     +     
Sbjct: 686 KG-IALGKDDEVVGMEVVDPEREVVVVTSKGYGKRTPLSEYRTQSRGGKGIKAQNVTKTK 744

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              + L V    + + +V ++  ++  +ID I  M R  +GV+L S K  
Sbjct: 745 GHVVGLKVVSPDEDLMIVTDSGVVIRMNIDGISRMGRYAQGVKLISVKQD 794


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/790 (34%), Positives = 420/790 (53%), Gaps = 63/790 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P+ S+E L+E I GPDFPT  I +  R  I+E YR G+G   +RA
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAI-INGRAGIIEGYRTGKGRVVIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+
Sbjct: 245 RTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + L+E Q  AIL LRL  L  LE+ +I +E + LL 
Sbjct: 424 LEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLN 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 484 LIKELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA H K+ D ++  + A T D +L  S 
Sbjct: 536 EEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 596 HGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M 
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +       +      G T + +    Y +  +     +  RGG G +  
Sbjct: 716 RTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISI 775

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 776 QVTERNGKVV 785



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 17/239 (7%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +     GR       ++  +   A L     +      + + +G ++ +   
Sbjct: 602 LKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLN 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+  +E DSL           I+L +  GK        +         +
Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  I +  +Q + +  V D +   +L  +  G        E   + R G+  + +   E+
Sbjct: 722 RG-IRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              VV+       D   ++ +   L+ F ++++  + R  +GVRL +   G    V+  
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSG--EAVVGM 837



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 664 SRPRSNGIIAVDLEEDDSLVGVDITDGAR-------DIMLFTDAGKVIRFDESKV----- 711

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSG 583
               R +   +  +  +  ++  ++K  +    +   +L +T+   GK   +    + SG
Sbjct: 712 ----RPMGRTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRV-SG 766

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           RG G+ +  +     N  +V +       + ++++ KG     + +E+    R   G   
Sbjct: 767 RG-GQGVISIQVTERNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRL 825

Query: 642 LKVSSEEKMKLVVKV 656
           + VSS E +  + K+
Sbjct: 826 INVSSGEAVVGMQKI 840


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/790 (34%), Positives = 419/790 (53%), Gaps = 63/790 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KK
Sbjct: 14  KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 74  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 134 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P+ S+E L+E I GPDFPT  I +  R  I+E YR G+G   +RA
Sbjct: 194 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAI-INGRAGIIEGYRTGKGRVVIRA 252

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+
Sbjct: 253 RTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 313 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 371

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 372 RRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAM 431

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 S + L+E Q  AIL LRL  L  LE+ +I +E + LL 
Sbjct: 432 LEKAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLN 491

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 492 LIKELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLIT 543

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA H K+ D ++  + A T D +L  S 
Sbjct: 544 EEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSN 603

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 604 HGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTV 663

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M 
Sbjct: 664 KKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG 723

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +       +      G T + +    Y +  +     +  RGG G +  
Sbjct: 724 RTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISI 783

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 784 QVTERNGKVV 793



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 17/239 (7%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +     GR       ++  +   A L     +      + + +G ++ +   
Sbjct: 610 LKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLN 669

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+  +E DSL           I+L +  GK        +         +
Sbjct: 670 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARGV 729

Query: 591 QLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  I +  +Q + +  V D +   +L  +  G        E   + R G+  + +   E+
Sbjct: 730 RG-IRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 788

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              VV+       D   ++ +   L+ F ++++  + R  +GVRL +   G    V+  
Sbjct: 789 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSG--EAVVGM 845



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 672 SRPRSNGIIAVDLEEDDSLVGVDITDGAR-------DIMLFTDAGKVIRFDESKV----- 719

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSG 583
               R +   +  +  +  ++  ++K  +    +   +L +T+   GK   +    + SG
Sbjct: 720 ----RPMGRTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRV-SG 774

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           RG G+ +  +     N  +V +       + ++++ KG     + +E+    R   G   
Sbjct: 775 RG-GQGVISIQVTERNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRL 833

Query: 642 LKVSSEEKMKLVVKV 656
           + VSS E +  + K+
Sbjct: 834 INVSSGEAVVGMQKI 848


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/792 (34%), Positives = 416/792 (52%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   KEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  + EP VFP++ PNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +ALID+P I I +L+E++ GPDFPT   ++     I E+Y  GRG   +RA
Sbjct: 186 NMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAA-VINGATGIHEAYHTGRGRIYLRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE + G G   +VVTE+PYQV K+RL+EKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ +++  + M+  F +NM  L  G+ P+++ L  +L+ +L HRREV+ 
Sbjct: 305 IELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQ-PRLLDLKQVLEAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                    
Sbjct: 364 RRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDEM 423

Query: 423 --------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     L++ Q  AIL+LRL  L  LE+ ++ SE   LL 
Sbjct: 424 LARAGAATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + + +  +L S  +    I  E+ E++E F        RRT   E          + +I 
Sbjct: 484 KIDDLLDILGSPDRLMRVIRDELLEMREQFGDE-----RRTEIIESR---LDLTLEDLIT 535

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+         R+ K      SA  FK+ D +   +   T D IL  S+
Sbjct: 536 EEDVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GKAY L    L   S    G+ I  L+ L   + I        Y     + + +S G  
Sbjct: 596 RGKAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREYLEDLYVFMSTSSGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +   +++  V    G   V ++    K + FS +Q+  M 
Sbjct: 656 KKTPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +     VI   I +  T + +    Y +        +  RGG G +  
Sbjct: 716 RTACGVRGVRLAED--QRVISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAI 773

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 774 QTGGRNGAVVGA 785



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 13/205 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      ++    + ++ G ++        +  S  + A+  ++GD L   
Sbjct: 626 EEGERINAILPVREYLEDLYVFMSTSSGTVKKTPLVDFSRPRSNGIIAVDLRDGDQLVDV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  ++LL++ GKA       +         ++  + L  +Q +++  + D    +
Sbjct: 686 AITDGSRDVMLLTSAGKAIRFSEEQVRPMGRTACGVRG-VRLAEDQRVISLIIVDEGT-V 743

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKL 670
           L+ +  G        +   + R G+  + + +  +   VV        D V ++ +   L
Sbjct: 744 LIATENGYGKRTPPDDFPVHGRGGQGVIAIQTGGRNGAVVGATLVADEDEVMLITDGGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKD 694
           +   +  I  + R  +GVRL    D
Sbjct: 804 VRTPVADISVLGRNTQGVRLIRLTD 828


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/790 (34%), Positives = 420/790 (53%), Gaps = 63/790 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P+ S+E L+E I GPDFPT  I +  R  I+E YR G+G   +RA
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAI-INGRAGIIEGYRTGKGRVVIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K+I  +  +RDES +    V+
Sbjct: 245 RTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + L+E Q  AIL LRL  L  LE+ +I +E + LL 
Sbjct: 424 LEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLN 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 484 LIKELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA H K+ D ++  + A T D +L  S 
Sbjct: 536 EEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 596 HGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F   ++  M 
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +       +      G T + +    Y +  +     +  RGG G +  
Sbjct: 716 RTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISI 775

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 776 QVTERNGKVV 785



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 85/239 (35%), Gaps = 17/239 (7%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +     GR       ++  +   A L     +      + + +G ++ +   
Sbjct: 602 LKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLN 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+  +E DSL           I+L +  GK        +         +
Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  I +  +Q + +  V D +   +L  +  G        E   + R G+  + +   E+
Sbjct: 722 RG-IRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
              VV+       D   ++ +   L+ F ++++  + R  +GVRL +   G    V+  
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSG--EAVVGM 837



 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 664 SRPRSNGIIAVDLEEDDSLVGVDITDGAR-------DIMLFTDAGKVIRFDESKV----- 711

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSG 583
               R +   +  +  +  ++  ++K  +    +   +L +T+   GK   +    + SG
Sbjct: 712 ----RPMGRTARGVRGIRVEKDQAVKSLVVVDPSGGTILTATENGYGKRTHIDEYRV-SG 766

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           RG G+ +  +     N  +V +       + ++++ KG     + +E+    R   G   
Sbjct: 767 RG-GQGVISIQVTERNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRL 825

Query: 642 LKVSSEEKMKLVVKV 656
           + VSS E +  + K+
Sbjct: 826 INVSSGEAVVGMQKI 840


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/795 (32%), Positives = 406/795 (51%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE S+++L+E I  PDFPTGGI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSVDELIELIPAPDFPTGGI-IYGMSGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIHYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F+++    R  +L+GL +A  NID+ IAII+    P   +  ++SR              
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E++ +K  FS      RR     E+         + 
Sbjct: 488 VMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRS----EIEFNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T + +L 
Sbjct: 544 LITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G  I  +  L   + I        +     + + +S+
Sbjct: 604 FSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR  + +DG     +     E  + + +    Y +  +        RG  G 
Sbjct: 724 PMGRNARGVRGMTLEDGQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTSSRNGKVVGA 798



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 73/204 (35%), Gaps = 13/204 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
                 L      ++    + ++RG ++              + A+   EGD L  A   
Sbjct: 640 EKITVVLPVKEFSEDNYVFMATSRGTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLT 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLV 616
                ++L S  GKA      ++     +   ++ +  L   Q ++   V  D +  +L 
Sbjct: 700 DGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGM-TLEDGQSVIALLVAGDESQSVLT 758

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLI 672
            +  G       +E   + R  K  + +     + + +  V+ +  D + ++     L+ 
Sbjct: 759 ATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVR 818

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDG 695
             + +I EM R   GV L S  DG
Sbjct: 819 TRVSEIREMGRATQGVTLISVDDG 842


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 410/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      +KS
Sbjct: 7   KVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+ K HPHGD +VYD+LVRLAQ F  RYPL+ G GNFG++DGDSAAA RYTEAR
Sbjct: 67  AYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  ++++ V+F   Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDNP+ +I  L+  I GPDFPTGG I+  RE I ++YR GRG  +VRA+
Sbjct: 187 LGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIM-GREGIWDAYRTGRGSIKVRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++G G   IVV+EIPYQV K+RLIEKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 ASIEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  ++  + M+  F + M  L  G  P+V+ L  +L  +L H+++V+ RR
Sbjct: 306 LRRDANPQVVLNQLYKHTQMQDSFGVIMLALVEGE-PRVLNLKEVLFYYLQHQKDVVVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + F +   + R  I++GL IA  ++DE+I  IR+   P   +  ++ +F LTE Q +AI+
Sbjct: 365 TRFELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEKFGLTEKQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L  LE  +++ E   L+ +   + S+L+  ++    I  E+  VK+ F+     
Sbjct: 425 EMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDERKVLGIIKDELLAVKKKFADP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT        + A  ++ +I +E + + I+++G+I+          +     ++A+ 
Sbjct: 482 --RRTAIT---SEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D ++      T    L  +  GK Y L    +     +  G AI  L+ +   + I
Sbjct: 537 TKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKGTAIVNLLYIGSEEKI 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T      +D    L + + +G       +E   + R G   + ++  + +  V    G 
Sbjct: 597 TTVIPVREFDPAQYLFMATKRGIVKKTPLNEYDTSRRDGIIAISLNEGDHLVDVKLTGGR 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAG 716
           + + +       + F  +++    R  +GV+  +    G  +V+  ++       +    
Sbjct: 657 EEIILATRGGLAIRFLEEEVRPTGRVTQGVKGINL--VGDDEVVGMEVARPDEFLLSVTA 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +           RGG G +  K   R+G  ++
Sbjct: 715 NGFGKRTRLSEYRAQARGGKGIINIKTTARNGPLVA 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 12/220 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLK 552
           +          +     +      + + RG ++    +  D S      A+   EGD L 
Sbjct: 589 YIGSEEKITTVIPVREFDPAQYLFMATKRGIVKKTPLNEYDTSRRDGIIAISLNEGDHLV 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   + I+L +  G A       +       + ++  I+L  + ++V   V     
Sbjct: 649 DVKLTGGREEIILATRGGLAIRFLEEEVRPTGRVTQGVKG-INLVGDDEVVGMEVARPDE 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENR 668
            LL V++ G       SE  A  R GK  + + +  +   +  +  V G+  V ++    
Sbjct: 708 FLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARNGPLVAIQAVKGEEEVMMISAEG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++      IP M R   GV L     G           E
Sbjct: 768 IIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETE 807


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/796 (33%), Positives = 416/796 (52%), Gaps = 65/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  V+L   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TAFAKEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF   Y++ + EP V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEVRMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A LALI+NPE  ++ L+ ++ GPDFPT GI +     I E+Y  GRG  
Sbjct: 182 IPPHNLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGI-INGAAGIREAYLTGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR   E    G   I+V E+PYQV K+RL+EKIAEL+   ++  +  +RDES +D  
Sbjct: 241 YLRARCQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P++++ +++  + M++ F +NM  L  G  P++M L  ++  ++ HRRE
Sbjct: 301 RMVIELRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNG-RPRLMNLRDLIAAFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------- 420
           V+ RR+   ++    R  +L+GL +A  NIDE+I +I++     + K  +VSR       
Sbjct: 360 VVTRRTLHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVV 419

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  Q  AIL+LRL  L  LE+ +I +E  
Sbjct: 420 TELLERADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL +   +  +L    +    I  E+  ++E F        RRT   E+         +
Sbjct: 480 ALLEQIADLLDILAKDTRLMQVIRDELVAIREQFGDP-----RRT---EIIADRLDLSAE 531

Query: 513 AMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+++        + +       A   KE D ++  + A+T D IL
Sbjct: 532 DLITEEDMVVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTIL 591

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ GK Y L    L   S    G     L+ L   + I        +D    + + ++
Sbjct: 592 CFSSSGKVYWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAHFIFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
            G    V  SE       GK  +++  ++++  V    G+  V +   + K++ F    +
Sbjct: 652 SGTVKKVALSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R   GVR  + ++G    VI   I    T ++     Y +          +RGG G
Sbjct: 712 RAMGRTAAGVRGMTLQEG--RKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQG 769

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G  + +
Sbjct: 770 VIAIQTSARNGAVVGA 785



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 78/231 (33%), Gaps = 17/231 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     ++     + +  G ++ +      +       A+  ++ D L   
Sbjct: 626 EEGERINAILPIREFDEAHFIFMATASGTVKKVALSEFERPRPSGKIAIELRDDDRLVDV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    ++L S+DGK       ++ +       ++ +  L   + ++   +      +
Sbjct: 686 AITNGEQDVMLFSSDGKVVCFHETDVRAMGRTAAGVRGM-TLQEGRKVIALIIASEGT-V 743

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G        E   + R G+  + +     +   +   +    D + ++ +   L
Sbjct: 744 LNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARNGAVVGAALVEDEDEIMLITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSAG 716
           +   + +I  +SR  +GV +     G    G+  +      E     + +G
Sbjct: 804 VRTRVSEISVLSRNTQGVTVIRLNPGEKVVGMDRIGSLPGGEEDELDNGSG 854


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 421/763 (55%), Gaps = 35/763 (4%)

Query: 12  LVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNE-PKILNLRDVLFYYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL IA  ++DE+IA+IR        +  ++ RF L++
Sbjct: 358 VIVIRRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFGLSQ 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA+  ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS       RRT   E++  + + L + +I +E + + I++ G+I+          K   
Sbjct: 478 FSDE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +   S    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I        +DS   L   + +G        + +   + G   + +  ++ +  
Sbjct: 590 IEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIE 649

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G    ++G      + F    +  M R   GV+  +  D    +VI   + +  L
Sbjct: 650 VKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKGITLDDD--DEVIGMDVVDREL 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    + Y +           RGG G        ++G  ++
Sbjct: 708 DILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNFLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       ++  I L+ + +++   V D  
Sbjct: 648 IEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKG-ITLDDDDEVIGMDVVDRE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    ++  EK   VV +    + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITSS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVC 802


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/763 (34%), Positives = 419/763 (54%), Gaps = 35/763 (4%)

Query: 12  LVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNE-PKILNLRDVLFHYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  ++ RF L+ 
Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       RRT   E++  + + L + +I +E + + I++ G+I+          K   
Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +   S    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I        +DS   L   + +G        + +   + G   + +  ++ +  
Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIE 649

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G    ++G      + F    +  M R   GV+  +  D    +VI   + +  L
Sbjct: 650 VKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDN--DEVIGMDVVDQEL 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    + Y +           RGG G        ++G  ++
Sbjct: 708 DILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       ++  I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKG-ITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    ++  EK   VV +    + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 420/763 (55%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG  I+  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEE-NGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNE-PRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S        R T  E    +     + +I++E + + ++N G+I+          +    
Sbjct: 479 SDE------RRTKIEKVVNEIDI--EDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            + A+  KE D ++  +   T   +L  +  G+ Y L A  +     +  G  +  LI +
Sbjct: 531 GIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAI 590

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I T        K   L + +  G       SE     + G   L +   +++  V
Sbjct: 591 EPDEKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKV 650

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
               GD ++ +V +N   + F+   +  M R   GV+  + KD  ++  +C  I  +G  
Sbjct: 651 KNTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEE 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   + +        +  RGGVG +  K   ++GK   +
Sbjct: 709 LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     +  L  +  +KE    + +  G ++              L AL  K+ D L  
Sbjct: 590 IEPDEKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLK 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             + +    I++++ +G A      N+ +       ++  I+L  +   V   +     +
Sbjct: 650 VKNTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKA-INLKDDDVAVCMDIAVDGEE 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           LLV+S  G       SE     R G   +     EK   +   T     D + ++  +  
Sbjct: 709 LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATICKVDDELMLINSSGV 768

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +  ++  I   +R   GV L    +      I 
Sbjct: 769 AIRINVADISVTNRSAMGVTLMRTTEDEKVVAIA 802


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/756 (32%), Positives = 420/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   RVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ +++D +D++D Y+ E+ EPVV P++FPNLL NGT+GIAVGMAT+IP H 
Sbjct: 128 MSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  LA+   P+I+I++L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMIL-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  + D+RDES  +   ++  
Sbjct: 247 VDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++ +++ L+ ++T F +NM  L  G+ P+V+ L   LK +L H++ V+ RR
Sbjct: 307 VRKDANASVILNNLYKLTALQTSFGINMLALVDGQ-PKVLNLKQCLKYYLDHQQVVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  ++DE+I++IR+       +  ++++F L++ Q  AIL
Sbjct: 366 TEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  +L+    +++++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    VS   +    + +I +E I + +++ G+++          K     +  + 
Sbjct: 483 --RRTEI--VSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  +   T + +L  +  GK Y      +   S    G  I  L+ +N ++ +
Sbjct: 539 TNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLGINKDEWV 598

Query: 603 VTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                 +       L   + +G +     +        G   L +   +++  V    G 
Sbjct: 599 NAVIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIRNNGLIALNLREGDELISVRLTDGS 658

Query: 660 HVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAG 716
              ++  +N +L+ F    +  M R   GV+  +       +V+  ++  E    +    
Sbjct: 659 KEIIIGTKNGQLIRFPETDVRSMGRTATGVKGITLDSD--DEVVGMEVLEENSEILMVTK 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +   ++   +  RGG G        ++G  ++
Sbjct: 717 KGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVA 752



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A +       E      +  G  +     S        L AL+ +EGD L  
Sbjct: 592 INKDEWVNAVIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIRNNGLIALNLREGDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  I++ + +G+    P  ++ S       ++  I L+ + ++V   V +   +
Sbjct: 652 VRLTDGSKEIIIGTKNGQLIRFPETDVRSMGRTATGVKG-ITLDSDDEVVGMEVLEENSE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTG-DHVAVVGENRK 669
           +L+V+ KG      E E     R GK             +  V  VTG + + ++     
Sbjct: 711 ILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVAVKVVTGEEDIMLITTGGV 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+  ++  I  M R  +GVRL    D     V  
Sbjct: 771 LIRMAVGDISTMGRNTQGVRLIRINDSEGEYVAT 804


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/763 (34%), Positives = 419/763 (54%), Gaps = 35/763 (4%)

Query: 12  LVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + EEN   +K   +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 1   MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 61  DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ +DF   Y+ E+ EPVV P+++PNLL NG SGIAVGMA
Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   A+I NP+I+  +L+EYI GPDFPT G I+  RE I ++YR GRG
Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE       IVV EIPYQV K+RL+EKIAEL+  KRI  + D+RDES  +
Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++P++++ +++  + M++ F +NM  +     P+++ L  +L  +L H+
Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNE-PKILNLRDVLFHYLEHQ 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR        +  ++ RF L+ 
Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   LLA   ++  +L +       I  E++E+KE 
Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       RRT   E++  + + L + +I +E + + I++ G+I+          K   
Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  K  D ++     ++   ++  +  GKAY L A  +   S    G  I  LI 
Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I        +DS   L   + +G        + +   + G   + +  ++ +  
Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIE 649

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
           V    G    ++G      + F    +  M R   GV+  +  D    +VI   + +  L
Sbjct: 650 VKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKGITLDDN--DEVIGMDVVDQEL 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    + Y +           RGG G        ++G  ++
Sbjct: 708 DILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVA 750



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +     + +      + +G ++              L A++ +E DSL
Sbjct: 588 IQIEQGESINAVIPVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       ++  I L+ N +++   V D  
Sbjct: 648 IEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMGRSATGVKG-ITLDDNDEVIGMDVVDQE 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++KG       S+  + TR GK    ++  EK   VV +    + + + ++  +
Sbjct: 707 LDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVC 802


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/759 (35%), Positives = 419/759 (55%), Gaps = 32/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E     V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+      +
Sbjct: 5   EGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKPHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVRLAQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM ++A  +++ ++++ VDF   Y+ ++ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +    LI+NPE ++  L+  I GPDFPT GII+  +  I E+Y  GRG   VR
Sbjct: 185 HNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIM-GKSGIREAYETGRGKVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +EE G G   I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D   ++
Sbjct: 244 ANATIEEDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P++++  ++  + ++  F + M  L   + P+V+ L  +L  +L  ++EV+ 
Sbjct: 303 IELKRDANPNVILNQLYKHTKLQDSFGIIMLALVDNQ-PKVLNLKEVLVHYLNFQKEVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NIDE+I+IIR+    ++ K  +  RF+L+E Q  A
Sbjct: 362 RRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFALSEKQSTA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLRSL  LE  +I+ EL  L+A   K+  +L +     N I  E+ E+K  F    
Sbjct: 422 IVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEIKGRF---- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
             G  R T  E S+ D     + +I++  + V ++  G+I+          K     + A
Sbjct: 478 --GDERRTAIEASQND--INIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              KE D ++      T D IL  S  G+ YTL    +        G  +  L+ L   +
Sbjct: 534 ATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        ++ +  L+  + KG        +     + G   + +  ++++  V   +
Sbjct: 594 KIQAVITLSEFEKSQYLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSS 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G D + +V +N   + F  + +  M R   GV+  S +D    +V+  +I  E +  +  
Sbjct: 654 GEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDE--DNVVSMEIVDESMDILVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +           RGG+G +  K   ++GK +++
Sbjct: 712 SENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAA 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 12/226 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
                   +A +  +  EK    V  + +G I+              L+A+  +E D L 
Sbjct: 588 LLRPEEKIQAVITLSEFEKSQYLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELI 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
               +   D+I++++ +G +      ++         ++  I L    ++V+  + D + 
Sbjct: 648 SVRLSSGEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKG-ISLRDEDNVVSMEIVDESM 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENR 668
            +LVVS  G        E     R G   +     EK   VV  T       + ++    
Sbjct: 707 DILVVSENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAATMVNDEHEIMIINSAD 766

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
            ++  +  +I    R   GV L    D      I   I +     D
Sbjct: 767 IVIRINSKEISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEIED 812


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/751 (33%), Positives = 415/751 (55%), Gaps = 30/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+E I GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+       K  ++ RF L+E
Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++ ++L   ++    I  E+ EVKE 
Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       +R T   +   + +   + +I ++ I + +++ G+I+              
Sbjct: 480 FND------KRRTEITIGGME-SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  L   T D IL  +  GK Y      +   S    G  I  L+ 
Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLG 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++  + I        +     L   + +G +     S        G   + +  E+++  
Sbjct: 593 VDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 652

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +GD   +V   N  L+ F+   +  M R   GV+  +   G    V+  +I E   
Sbjct: 653 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITL--GEEDQVVGMEIVEEDV 710

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             +      Y +        L  RGG G   
Sbjct: 711 NVLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/755 (33%), Positives = 419/755 (55%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAVGMAT+IP H +
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  G+G   VRA+ 
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES      ++   
Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N   L  G+ P+V+ L   L+ +L H+  V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+D +IA+IR     D  +  ++++FSL+E Q  AIL+
Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    VS   +    + +I ++ I + +++ G+I+          +     +  ++ 
Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ--- 600
            E D ++  L   T D IL  +  GK Y      +        G  I  L++++  +   
Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIINLLEVDKGEWVN 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            I+    +     L   + +G +     S        G   L +  E+++  V    G  
Sbjct: 600 AIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELISVKLTDGKR 659

Query: 661 VAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
             V+  +   L+ F+ + +  M R   GV+  +       +VI  +I E  +  +     
Sbjct: 660 DMVIGTKKGMLIRFNENDVRSMGRTATGVKGITL--DSEDEVIGMEILEEQSDVLIITKN 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G        ++G  ++
Sbjct: 718 GYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A ++      +      + +G  +     S        L AL+ +E D L 
Sbjct: 591 EVDKGEWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G        ++ S       ++  I L+   +++   + +   
Sbjct: 651 SVKLTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATGVKG-ITLDSEDEVIGMEILEEQS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L+++  G        E    TR GK      +   + + + L      + + ++  + 
Sbjct: 710 DVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIMLITVSG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            L+  S+  I +M R  +GV++    D      + 
Sbjct: 770 VLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVA 804


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/740 (54%), Positives = 533/740 (72%), Gaps = 8/740 (1%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V LR ALEERYLAYALSTI  RA+PD RDG KPVHRRI++ M  + LD G AFKKSA
Sbjct: 13  IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI--SGQGNFGNIDGDSAAAYR-YTE 133
           +IVG+V+G  HPHGDQ++YD++VRLAQ F  RYPL+   GQGNFGNIDGD+ AAY  +  
Sbjct: 73  KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFGNIDGDNPAAYPLHRS 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A +T VA L+L+G+DED V+FR  Y+ +  EP+V P  FPNLLANG  GIAVGMATSIP 
Sbjct: 133 AHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPP 192

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+C+AAL LI+ P+   + LL+++ GPDFPTGGI V+S+++I E+Y  GRG FRVR
Sbjct: 193 HNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ARW  EE  RG+W +VVTEIP+ VQKSRLIEKIAEL   K++PL+ D+RDESAEDVRIV+
Sbjct: 253 ARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVI 312

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PK++++DP L+MES+F L+++E + PLN+NVL  GR+P+V+ L   L+EWL H R+VL 
Sbjct: 313 EPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLI 372

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RRS++R   I+ R+E+L G LIAYLNID++I IIR ED+PKP ++  F LTE Q +AILN
Sbjct: 373 RRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILN 432

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLRSLRKLEE +I++E  NL  E + I+++L S  +QW ++  ++ +V+++F   T LG
Sbjct: 433 MRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLG 492

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +RRTTF +    D A +++A +E+EP+TVV+S++GWIR++K H  DLS L FK+ D L  
Sbjct: 493 KRRTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGF 552

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A  A TT ++LL +T+GK Y+L    L  GRGHGE I+L IDL      V  FV     K
Sbjct: 553 AFFAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRK 612

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR---KL 670
            LV S +G  F+V E + +  T+KGK  L V    + + V +V GD VA  G  R   K+
Sbjct: 613 FLVASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVA--GHRRETAKM 670

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F +DQIPEM+RG+GVRLQ YKDGG+SDV+ F    GLTW DSAGR ++ +  +L  W 
Sbjct: 671 LVFPLDQIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQ 730

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G R   G L PKGFP+S KF
Sbjct: 731 GTRADAGRLPPKGFPKSNKF 750


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/818 (31%), Positives = 410/818 (50%), Gaps = 79/818 (9%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            I        +    VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+
Sbjct: 127 PIVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEL 186

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
             D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD
Sbjct: 187 NNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGD 246

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTE R++++A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIA
Sbjct: 247 NAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIA 306

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT GI +     + E YR
Sbjct: 307 VGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGI-IYGISGVREGYR 365

Query: 245 LGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRD
Sbjct: 366 TGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRD 425

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +    V+    R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ 
Sbjct: 426 ESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLEC 484

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+    P   K  ++ R
Sbjct: 485 FLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGR 544

Query: 421 -----------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L++ Q   IL +RL+ L
Sbjct: 545 SWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRL 604

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             LE+ +I  E   ++A+   +  +L   ++    I  E+  ++  F      G  R + 
Sbjct: 605 TGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEF------GDERRSQ 658

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSL 551
            E +  +  T  + +I  + + V +S+ G+         R+ K       A   KE D +
Sbjct: 659 IEHNATELDT--EDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWI 716

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                A+T D IL  S  G+ Y L    +   S    G  I  +  L+  + I       
Sbjct: 717 DTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVK 776

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVG 665
            +D    + + +SKG       +E     + G   + +   + +       G H V +  
Sbjct: 777 QFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFS 836

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSA 715
           +  K + F  + +  M R  +GVR  + ++G     +     E           + + + 
Sbjct: 837 DAGKAVRFDENDVRPMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTAT 896

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           RG  G +  +   R+GK +++
Sbjct: 897 ENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAA 934



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 767 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 826

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 827 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 885

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 886 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 945

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 946 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 978


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 423/757 (55%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M+E+ L     ++KS
Sbjct: 9   RILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPDKPYRKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVY ++V++AQ F  R PL+ G GNFG++DGDS AA RYTEAR
Sbjct: 69  ARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ +D++ VDF   ++E   EP+V P++FPNLL NG++GIAVGMATSIP HN
Sbjct: 129 MSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMATSIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID P+  +E+L+ Y+ GPDFPTG II+   ESI E+YR GRG  +VRAR
Sbjct: 189 LGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIM-GTESIKEAYRTGRGKIKVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IVVTEIPYQV K+RL+E+IAEL+  K+I  + D+RDES  +   ++  
Sbjct: 248 AEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGMRIVIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ ++++ +++  S ME    + M  L  G  P+ + L  +L  ++ H+++V+ RR
Sbjct: 308 LKRDVNANIILNNLYKHSQMEETISVIMIALVNGE-PKCLNLKEVLHYYIEHQKDVVTRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + + +   + R  IL+GL IA  NID +I  IR+     + K  +V RF LTE Q  AIL
Sbjct: 367 TKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFGLTEIQAQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL  L  LE  +I +E D L+ +  ++  +L S +     I  EI E+K  ++     
Sbjct: 427 EMRLNRLTGLEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEIKNKYTDE--- 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+       +I++E I + +++ G+I+          K     +SAL 
Sbjct: 484 --RRT---EIQHAEGEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISALT 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D +K  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L   + I
Sbjct: 539 TREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGEKI 598

Query: 603 VTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            T    D       LL+ + KG     + S+     + G   + +   +++  V    G+
Sbjct: 599 ATLIDVDGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTDGE 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V  N   + FS   +  M R   GV+  +  +G    V+   +  EG   +  + 
Sbjct: 659 QDVMLVTRNGMSIRFSEKDVRGMGRTAMGVKGITLGEG--DTVVSMSLASEGTDMLVVSE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  +        R G G        ++G  + +
Sbjct: 717 NGFGKRTDLEEYRSQIRAGKGIKTYNISEKTGSIVGA 753



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              E+    ++ + +G ++  K           L ++  KEGD +           ++L+
Sbjct: 605 DGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLTDGEQDVMLV 664

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + +G +      ++   RG G     +  I L     +V+  +      +LVVS  G   
Sbjct: 665 TRNGMSIRFSEKDV---RGMGRTAMGVKGITLGEGDTVVSMSLASEGTDMLVVSENGFGK 721

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
             +  E  +  R GK     +  EK   +V        D + ++  +  L+   +++I  
Sbjct: 722 RTDLEEYRSQIRAGKGIKTYNISEKTGSIVGAEMVAEDDEMMIINSDGVLIRIKVNEISI 781

Query: 681 MSR-GKGVRLQSYKDGG 696
             R   GV+L +  +  
Sbjct: 782 FGRVTSGVKLMNVDEEV 798



 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 73/211 (34%), Gaps = 10/211 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +    + ++  IA +   VK+          +        +     +   + 
Sbjct: 596 EKIATLIDVDGKEENKYLLIATKKGMVKKTKISDFKNINKSGLISIGLKEGDEVIGVKLT 655

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + E   ++++  G         +R +   ++ +  +   EGD++     A     +L++S
Sbjct: 656 DGEQDVMLVTRNGMSIRFSEKDVRGMGRTAMGVKGITLGEGDTVVSMSLASEGTDMLVVS 715

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A +     ++++++S G    ++
Sbjct: 716 ENGFGKRTDLEEYRSQIRAGKGIKTYNISEKTGSIVGAEMVAEDDEMMIINSDGVLIRIK 775

Query: 628 ESEI--IANTRKGKTFLKVSSEEKMKLVVKV 656
            +EI        G   + V  E  +  + K+
Sbjct: 776 VNEISIFGRVTSGVKLMNVDEEVSIVSIAKI 806


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/790 (34%), Positives = 421/790 (53%), Gaps = 63/790 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P+ S+E L+E I GPDFPT  I +  R  I+E YR G+G   +RA
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAI-INGRAGIIEGYRTGKGRVVIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++ E+PYQV K+RLIE+IAEL+  K++  +  +RDES +    V+
Sbjct: 245 RTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ ++F  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + L+E Q  AIL LRL  L  LE+ +I +E + LL 
Sbjct: 424 LEKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLN 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 484 LIKELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA H K+ D ++  + A T D +L  S 
Sbjct: 536 EEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 596 HGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F  +++  M 
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +       +      G T + +    Y +  +     +  RGG G +  
Sbjct: 716 RTARGVRGIRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISI 775

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 776 QVTERNGKVV 785



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 15/231 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +     GR       ++  +   A L     +      + + +G ++ +   
Sbjct: 602 LKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKDGSYVFMATKKGTVKKVPLN 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+  +E DSL        T  I+L +  GK        +         +
Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +  I +  +Q + +  V D     +L  +  G        E   + R G+  + +   E+
Sbjct: 722 RG-IRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTER 780

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              VV+       D   ++ +   L+ F ++++  + R  +GVRL +   G
Sbjct: 781 NGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSG 831



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 23/195 (11%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 664 SRPRSNGIIAVDLEEDDSLVGVDITDGTR-------DIMLFTDAGKVIRFDENKV----- 711

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSG 583
               R +   +  +  +  ++  ++K  +        +L +T+   GK   +    + SG
Sbjct: 712 ----RPMGRTARGVRGIRVEKDQAVKSLVVVDPNGGTILTATENGYGKRTHIDEYRV-SG 766

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           RG G+ +  +     N  +V +       + ++++ KG     + +E+    R   G   
Sbjct: 767 RG-GQGVISIQVTERNGKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRL 825

Query: 642 LKVSSEEKMKLVVKV 656
           + VSS E +  + K+
Sbjct: 826 INVSSGETVVGMQKI 840


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/803 (31%), Positives = 403/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM EM   +   F K
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD S+YD+LVR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE 
Sbjct: 66  CARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++  +L  ++++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   AL L+ N + +I++L+E +  PDFPTGGI +     + + YR GRG   +RA
Sbjct: 186 NITEVINGALHLLANEQCTIDELIELVPAPDFPTGGI-IYGVSGVRDGYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   EE GR G   I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+
Sbjct: 245 KTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ 
Sbjct: 305 IELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQLLECFLSHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NID+ IAIIR    P   K  ++SR          
Sbjct: 364 RRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L++ Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  +++A+   +  +L    +    I  E+   K  F         R +  E +  D AT
Sbjct: 484 EYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAK--DERRSTIEHNATDLAT 541

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+         R+ K       A+  K+ D +     A+T D
Sbjct: 542 --EDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L   + I            +    
Sbjct: 600 YILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDR 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S G       S+     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GVR  + ++      +     E  + + +    + +         
Sbjct: 720 RFDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQTSERNGKVVAA 802



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 17/220 (7%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA      ++         ++ + +L   Q ++   V ++  + +L  +  G      
Sbjct: 715 GGKAVRFDENDVRPMGRTARGVRGM-NLEETQQVIALLVAENEQQSVLTATENGFGKRTP 773

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R
Sbjct: 774 ITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGR 833

Query: 684 GK-GVRLQSYKDG----GISDVICFKICEGLTWIDSAGRS 718
              GV L + +DG    G+  V+   + + +   ++ G  
Sbjct: 834 ATQGVTLIAVEDGTKLSGLQRVVESDVEDAVEGDNAEGAG 873


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/773 (50%), Positives = 532/773 (68%), Gaps = 28/773 (3%)

Query: 3   VDNISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           + ++++ N +       V   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++A
Sbjct: 1   MSDLTDDNNMDPPETGEVLEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT  AE +L+G++E+AVD+R+ Y+   +EPVV P+ FPNLLANG+
Sbjct: 121 IDGDNPAASRYTEARMTAAAEALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ +A L LI  P    E L+E + GPDFPTGG+IVE +E+I+
Sbjct: 181 SGIAVGMATNIPPHNIPELVDACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENIL 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG FR+R +W +E++ RG W IVVTEIPYQVQKS+LIEKIAE+I  K+IP+L D
Sbjct: 241 NAYATGRGSFRLRCKWEIEKLDRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILAD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+DVR+V+ PK++++DP++LM  ++  SD+E RF +NMNVL  G  P+V  L  +
Sbjct: 301 VRDESADDVRMVIEPKSKNVDPEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEV 360

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------ 414
           L+ +L HRREVL RRS  RM  ID R+E+L+G ++A+LN+D +I IIR +D PK      
Sbjct: 361 LRAFLDHRREVLIRRSQHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALIRE 420

Query: 415 -----------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                            P +     L+E Q +AILN+RLRSLR+LEE ++  E   L+ E
Sbjct: 421 DWSLTHKRAMDETDYLSPALRDEEGLSEVQAEAILNMRLRSLRRLEELELLREQSALMEE 480

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           + +++ LL+S   QW++I+ ++RE ++ F K+   G RRT F E +  +     +AMIE+
Sbjct: 481 RAELEDLLDSDDLQWSRISEQLRETRKQFGKNYKGGARRTLFAEAAEVE-DVPIEAMIER 539

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           EPIT+V S  GW+R+L  H      L FK+GD  +   HA TTDR+L+  T+G+ YT+ A
Sbjct: 540 EPITIVCSKMGWVRALSGHVDLARELKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSA 599

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            NL  GRG GE ++L++DL +  DIV  F++    KLLV SS G+ FIV E+++IA TR 
Sbjct: 600 SNLPGGRGMGEPLRLMVDLPNEADIVDFFIHQPERKLLVASSAGDGFIVPEADVIAQTRT 659

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
           GK  L V      K+ + VTGDHVA VGENRK+L+F I+++PEM RGKGVRLQ YKDGG+
Sbjct: 660 GKQVLNVKDGVMAKVCITVTGDHVACVGENRKVLVFPIEELPEMGRGKGVRLQKYKDGGL 719

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           SDV  F +  GL+W D AGR   R+E +L  W GKR   G + P+GFPR  +F
Sbjct: 720 SDVATFTMAGGLSWQDPAGR--TRTETELAEWAGKRASAGRMAPRGFPRDNRF 770


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/761 (35%), Positives = 426/761 (55%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L ++ +K V +   + + +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ ++++ VDF   Y+ E++EP V P++FPNL+ NG  GIAVGMAT+
Sbjct: 122 YTEARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++D+P+I++ +L++ YI GPDFPTGGII+  R  I ++Y  GRG 
Sbjct: 182 IPPHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIIL-GRSGIRQAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
              R+++ VEE+G G   IVVTEIPYQV K+ LI KIA+L+  K++  +  + DES  D 
Sbjct: 241 IITRSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    + +  +++M  +F L+ ++T F +NM  L  G  P+ M +  +L+ ++ H+ 
Sbjct: 301 IRIVIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGA-PKQMGIKEMLQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTEN 426
           +V+ RR+ F ++  + R  IL+GL IA  +IDEII +I   +N+ + +  ++ RF LTE 
Sbjct: 360 DVVVRRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   LL     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E+S AD +   + +I  E + + ++  G+I+               
Sbjct: 480 GDP-----RRT---EISEADYSMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D +++     T D ++L +  GK Y +    + S      G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +      +       LL V+  G       SE  +  + GK  + +  ++++  V
Sbjct: 592 DKEEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +     +  V   +  +G   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGIRAMGRTASGVKGFNVDGSVVVGVATSR--DGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G  +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVS 750



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +     +A +      +    + ++  G ++       D        A+  ++ D L   
Sbjct: 592 DKEEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK 613
                 D I++  ++GKA       +   R  G     +   N     +V          
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGI---RAMGRTASGVKGFNVDGSVVVGVATSRDGTH 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGENR 668
           LL VS  G        E    TR  K      +   + + +  V  V GD  V ++    
Sbjct: 709 LLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGD-LVSVRAVNGDEDVMIITNTG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +++ I   SR  +GV+L +  +      I     E
Sbjct: 768 IIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKE 807



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q  +IA  +R+  E+       G         +                      +   
Sbjct: 633 RQNGKIAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRF----------------HEDG 676

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD--RILLLSTDG--KAYTLPAGNLLSGRG 585
           IR++   +  +   +    D   +   A + D   +L +S +G  K   +    L +   
Sbjct: 677 IRAMGRTASGVKGFNV---DGSVVVGVATSRDGTHLLAVSENGYGKRTAIEEYRLTTRGA 733

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLK 643
            G     +       D+V+    +    ++++++ G    +    I   +   +G   + 
Sbjct: 734 KGVKTINIT--QKTGDLVSVRAVNGDEDVMIITNTGIIIRIAVENIGIYSRNTQGVKLIN 791

Query: 644 VSSEEKMKLVVKVTGDHVA 662
           V  +E +  +  V  +  A
Sbjct: 792 VGEDESVAKIAIVDKEEEA 810


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 420/763 (55%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++  +GL   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  + LIDNPE+++  L+  I GPDFPTG  I+  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +EE   G   IVVTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D 
Sbjct: 241 IVVRADAEIEEE-NGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++++  ++  + ++  F + M  L     P+V+ +  IL  ++ +++
Sbjct: 300 MRIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNE-PRVLNIKEILSNYIDYQK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GL IA  NIDE+I+IIR+       K  ++ +F+L++ 
Sbjct: 359 EVITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RLR L  LE  +I+ E   L+ + E + S+L S ++    I  E+ ++K  +
Sbjct: 419 QATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S        R T  E    +     + +I++E + + ++N G+I+          +    
Sbjct: 479 SDE------RRTKIEKVVNEIDI--EDLIQEEDVVITLTNSGYIKRISADTYSAQRRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            + A+  KE D ++  +   T   +L  +  G+ Y L A  +     +  G  +  LI +
Sbjct: 531 GIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAI 590

Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I T        K   L + +  G       SE     + G   L +   +++  V
Sbjct: 591 EPDEKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLKV 650

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
               GD ++ +V +N   + F+   +  M R   GV+  + KD  ++  +C  I  +G  
Sbjct: 651 KNTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEE 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   + +        +  RGGVG +  K   ++GK   +
Sbjct: 709 LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGA 751



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     +  L  +  +KE    + +  G ++              L AL  K+ D L  
Sbjct: 590 IEPDEKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRKNGLIALSLKDNDELLK 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             + +    I++++ +G A      N+ +       ++  I+L  +   V   +     +
Sbjct: 650 VKNTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKA-INLKDDDVAVCMDIAVDGEE 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           LLV+S  G       SE     R G   +     EK   +   T     D + ++  +  
Sbjct: 709 LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATICKVDDELMLINSSGV 768

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +  ++  I   +R   GV L    +      I 
Sbjct: 769 AIRINVADISVTNRSAMGVTLMRTTEDEKVVAIA 802


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/756 (33%), Positives = 420/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NVK +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKS
Sbjct: 8   NVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  I++ +++D +D+RD Y+  + EP+V PS+FPNLL NG+SGIAVGMAT+IP H 
Sbjct: 128 MSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LAL  +PEI+I++L++YI GPDFPT G+IV  R  I  +Y  G+G   +RA+
Sbjct: 188 LGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIV-GRSGIRRAYESGKGSITMRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 VRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L  +L H++ V+ RR
Sbjct: 307 VRKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLYYYLEHQKVVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIA+IR     D  +  ++  FSL+E Q  AIL
Sbjct: 366 TEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E   L+    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFNDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    V+   +    + +I +E I + +++ G+I+          K     +  + 
Sbjct: 483 --RRTEI--VAGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  L   T D IL  +  GKA+      +   S    G  I  ++ ++  + +
Sbjct: 539 TNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPEFSRTAKGIPIINMLGVDKGEWV 598

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   +     L   + +G +     S+       G   + +   +++  V    G 
Sbjct: 599 NAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIRTNGLIAINLRENDELISVKLTDGS 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAG 716
             + +  +   L+ F    +  M R   GV+  +     I  V+  +I  E    +    
Sbjct: 659 KDIIIGTQKGMLIRFPETDVRSMGRTATGVKGINLDSEDI--VVGMEILEEKDDVLVVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +        +  RGG G        R+G+ +S
Sbjct: 717 KGFGKRTPAEEYRIQTRGGKGLKTCNITDRNGELIS 752



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A ++      +      + +G  +              L A++ +E D L  
Sbjct: 592 VDKGEWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIRTNGLIAINLRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  I++ +  G     P  ++ S       ++  I+L+    +V   + +    
Sbjct: 652 VKLTDGSKDIIIGTQKGMLIRFPETDVRSMGRTATGVKG-INLDSEDIVVGMEILEEKDD 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG        E    TR GK            ++  V  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRNGELISVKAVTGEEDLMLITAHGV 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+   ++ I    R  +GV+L    +
Sbjct: 771 LIRMDVNDISITGRNTQGVKLIRLDE 796


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 413/755 (54%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+     FKKSA
Sbjct: 9   IIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +DF   Y+ E+ EPVV PS+FPNLL NG SGIAVGMAT+IP HN+
Sbjct: 129 SKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +   ALI NPEIS  +L++YI GPDFPT   I+  R  I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYIL-GRSGIRQAYTTGRGSITMRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE       IVV E+PYQV K+RL+EKIAEL+  K+I  + D+RDES      V+   
Sbjct: 248 TIEE-HNNKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ +++  + +++ F +NM  +     P+++ L  +L  +L H+ EV+ RR+
Sbjct: 307 RRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNE-PKILTLKDVLSHYLQHQVEVVRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  +IDE+IA+IR     ++ +  +++RF L+  Q  AIL+
Sbjct: 366 EFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ E + LL +  +   +L + +     I  E++E++E ++      
Sbjct: 426 MRLRRLTGLEREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADE---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  +++ L + +I +E + + I++ G+I+          K     +  +  
Sbjct: 482 -RRT---EITIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++     ++   ++  +  GKAY L A  +        G  I  LI +   + + 
Sbjct: 538 KDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVN 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +D    L   + +G        + I   + G   + +  ++ +  V    G+ 
Sbjct: 598 AVIEVERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNE 657

Query: 661 VAVVGE-NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGR 717
             ++G      + F    +  M R   GV+  +  +G    VI    +  G   +     
Sbjct: 658 EVIMGTAQGMSIRFPESDVRSMGRAATGVKGITLDEG--DSVIGMDVVVPGQDVLIVTAN 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +           RGG G        ++G  + 
Sbjct: 716 GYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVG 750



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 81/216 (37%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A ++    +        + +G ++              L A++ +E D+L
Sbjct: 588 IQIEQGETVNAVIEVERFDDNKYLFFATKQGIVKKTPIEDYINIRKGGLIAVNLREDDTL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    + +++ +  G +   P  ++ S       ++  I L+    ++   V    
Sbjct: 648 IDVKLTDGNEEVIMGTAQGMSIRFPESDVRSMGRAATGVKG-ITLDEGDSVIGMDVVVPG 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++ G       SE    +R GK    ++  EK   VV +      + + ++  +
Sbjct: 707 QDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  S++ I  M R  +GV+L + ++      +C
Sbjct: 767 GTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVC 802



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 23/202 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E   ++     ++   IA  +RE   +       G                 +      
Sbjct: 625 IEDYINI-----RKGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESD---- 675

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       +RS+   +  +  +   EGDS+           +L+++ +G     P 
Sbjct: 676 ------------VRSMGRAATGVKGITLDEGDSVIGMDVVVPGQDVLIVTANGYGKRTPI 723

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
               +    G+ I+ +     N  +V   V      L+++++ G         I    R 
Sbjct: 724 SEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIRTSMEGISTMGRN 783

Query: 638 --GKTFLKVSSEEKMKLVVKVT 657
             G   + +  ++ +  V +  
Sbjct: 784 TQGVKLINIREDDTVATVCRTD 805


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/766 (34%), Positives = 422/766 (55%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  NT     V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G
Sbjct: 1   MSEQNTP---QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 58  MTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  
Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYES 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 237 GRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +  +++ +++  + ++T F +N+  L  G  P+V+ L   L  +L
Sbjct: 297 DRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGE-PKVLNLKQCLVHYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FS
Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+
Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+       +R T    +  +     + +IE+E I V +++ G+I+          K
Sbjct: 476 KERFND------KRRTEIVTAGLET-IEDEDLIERENIVVTLTHNGYIKRLPASTYRSQK 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +     D ++  +   T D IL  S  GK Y      +        G  I  
Sbjct: 529 RGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEFGRTAKGIPIIN 588

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I        +D    L   +  G +     S+       G   L +  +++
Sbjct: 589 LLEVEKGEWINAIIPVSEFDEKLYLFFTTKHGISKRTTLSQFANIRNNGLIALGLREDDE 648

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G   + +  +N  L+ F    + EM R   GV+  +  D  I  V+  +I E
Sbjct: 649 LMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTAAGVKGITLTDDDI--VVGMEILE 706

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +      Y +           RGG G    K    +G+ ++
Sbjct: 707 DDSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRLVT 752



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +  +  +++      +  G  +           +  L AL  +E D L 
Sbjct: 591 EVEKGEWINAIIPVSEFDEKLYLFFTTKHGISKRTTLSQFANIRNNGLIALGLREDDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T +I++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 651 AVRLTDGTKQIIIGTKNGLLIRFPESDVREMGRTAAGVKG-ITLTDDDIVVGMEILEDDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G        +    +R GK         +  ++  V    G+  + ++  + 
Sbjct: 710 HVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENNGRLVTVKATKGEEDLMIITASG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            L+   I+ I    R  +GVRL     G    V    + E
Sbjct: 770 VLIRMDIEDISITGRVTQGVRLIRM--GEQEHVATVALVE 807


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/770 (32%), Positives = 415/770 (53%), Gaps = 34/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  + ++ +  V++   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++AM  +G
Sbjct: 1   MSDTKDVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++K A  VGEV+GK HPHGD +VYDSLVR+AQ F  RY  I G GNFG+IDGD 
Sbjct: 61  FTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+++++  +L+ +++D VDF+  ++E   EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  + +ID+P +++++L++ I GPDFPT GIIV  ++ I ++Y  
Sbjct: 181 GMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIV-GKQGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E++      IVVTE+PYQV K++LIE+IAEL+  KRI  + D+RDES
Sbjct: 240 GKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV----MPLDGIL 361
            +D   ++    +  + ++++  ++  + M+  F +NM  L +    +     + L   +
Sbjct: 300 DKDGMRIVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMV 418
             ++ H+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I II   RNE   K  ++
Sbjct: 360 DYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALI 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF  +E Q  AI+++RL  L  LE  +I +E   LL E +    +L +     + I  E
Sbjct: 420 QRFGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKKE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+K+ +        RRT        +     + +IE E   V +++ G+I+       
Sbjct: 480 LEEIKQKYGDE-----RRTKII---PDEDEIEIEDLIEVEENVVTLTHFGYIKRLPTSTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
              K     +  L  +E D ++      T D IL  +  GK Y L    +     +  G 
Sbjct: 532 KSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L+ L+ N+ I T      Y     L + +  G     +  E     + G T + + 
Sbjct: 592 AIVNLLQLDQNEKITTVIPISEYKEGLYLFMATKHGIVKKTDLMEFDNIRKGGLTAVSLR 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
             +++  V    G  ++ +V  N   + F+   +  + R   GV+  + ++    +V+  
Sbjct: 652 ENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPLGRAAQGVKGITLEED--DEVVGM 709

Query: 704 KIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               E  + +    R + +        +  RGG G L  +   ++GK   
Sbjct: 710 SADIENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTEKTGKVAG 759



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           + +      +  +  ++     + +  G ++       D      L+A+  +E D L   
Sbjct: 600 DQNEKITTVIPISEYKEGLYLFMATKHGIVKKTDLMEFDNIRKGGLTAVSLRENDELIDV 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T  ILL++ +G +      ++       + ++  I L  + ++V          +
Sbjct: 660 RLTDGTKNILLVTRNGMSIRFNEKDVRPLGRAAQGVKG-ITLEEDDEVVGMSADIENASV 718

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKL 670
           LVV+ +G     E  E     R GK  L     EK   V    +    D V ++  +  +
Sbjct: 719 LVVTERGFGKRTELDEYKVQIRGGKGILTYRVTEKTGKVAGMKLVSEDDDVMMISSDGSI 778

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +      I  + R   GV L    +G     + 
Sbjct: 779 IRIKAKDISLLGRATQGVTLMRMDEGVSVVSVA 811


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +TL A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTLEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|169830227|ref|YP_001716209.1| DNA gyrase subunit A [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/756 (34%), Positives = 412/756 (54%), Gaps = 32/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM  +GL      +KS
Sbjct: 7   KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ KLHPHGD +VYD+LVRLAQ F  RYPL+ G GNFG+IDGD+AAA RYTE R
Sbjct: 67  AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EPVV PS+ PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +  + L D+P+  +E L+ +I GPDFPTGG I+  R  IVE+YR GRG  ++R  
Sbjct: 187 LKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIM-GRHGIVEAYRTGRGSIKMRGH 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E VG     IV+TE+PYQV K+RL+EKIA L+  K+I  + D+RDES      V+  
Sbjct: 246 AEFERVGS-RTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++ +  ++  + ++  F + +  L  G+ PQV+ L  IL  +L H+REV+ RR
Sbjct: 305 LRREVNPEITLNLLYKHTQLQDNFGVILLALVDGQ-PQVLALKDILSHYLGHQREVITRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
             + +     R+ I++GL IA  ++DE+I  IR      + +  +++ F L+E Q  AIL
Sbjct: 364 CRYELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMAGFGLSEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++++E ++L+A  E++++LL   ++    +  E+  V++ F+     
Sbjct: 424 DMRLQRLTALERDKLENEFNDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+   D     + +I +E   ++++N G+I+          +     ++ + 
Sbjct: 481 --RRT---ELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVE 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            K  D ++      T D +L  +  GK Y +    +     +  G A+  LI + + + +
Sbjct: 536 TKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVANGERV 595

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   Y     L +V+ KG        E  +  R G   L +   +++  V    G 
Sbjct: 596 TAVIPVTEYSGDAFLFMVTRKGIVKKTVLQEFDSARRDGLIALTLDEGDELVDVKITDGK 655

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             V +   N  ++ F   Q+  M R   GVR  S ++G    V+   I +     +  + 
Sbjct: 656 SEVLLGTRNGMVIRFPEGQVRPMGRTAHGVRGISLREG--DMVVGMDIVDPDDQLLVVSE 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        +  RGG G +  +   R+G  +S
Sbjct: 714 KGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVS 749



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 12/198 (6%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +++ +G ++       D +      AL   EGD L           +LL + +G     
Sbjct: 611 FMVTRKGIVKKTVLQEFDSARRDGLIALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRF 670

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P G +         ++  I L     +V   + D   +LLVVS KG   +    E    +
Sbjct: 671 PEGQVRPMGRTAHGVRG-ISLREGDMVVGMDIVDPDDQLLVVSEKGYGKVTPVKEFRVQS 729

Query: 636 RKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R G   +       +   + L +   G+ + +V ++  L+   ID+IP+  R  +GVRL 
Sbjct: 730 RGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKIDEIPQFGRQAQGVRLM 789

Query: 691 SYKDGGISDVICFKICEG 708
               G     + + + E 
Sbjct: 790 RLAPGDAVVAVAWILPED 807


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 415/756 (54%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +VK +++   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKS
Sbjct: 6   SVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VYD++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEAR
Sbjct: 66  ARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAVGMAT+IP H 
Sbjct: 126 MSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPHQ 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I  +Y  GRG   VRA+
Sbjct: 186 LGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQIL-GRSGIRRAYETGRGSITVRAK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V E+PYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 245 VEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIVME 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++L+ +++  + ++T F +N+  L  G  P+V+ L   L  +L H++ V+ RR
Sbjct: 305 VKKDANANVLLNNLYKQTSLQTSFGINLLALVNGE-PKVLNLKQCLYYYLEHQKVVIKRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           ++F ++  + R  IL+GL IA  ++D +I +IR+    D  +  +++ FSL+E Q  AIL
Sbjct: 364 TAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTEFSLSEKQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ EVKE F+     
Sbjct: 424 DMRLQRLTGLEREKIEEEYQGLMQLIAELKAILADEEKVLEIIREELTEVKERFND---- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R T   V   +     + +I ++ + + +++ G+I+          +     +  + 
Sbjct: 480 --TRRTEIMVGGFEN-IEDEDLIPRQNVVITLTHNGYIKRLPLSTYRSQRRGGRGIQGMG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  L   T D +L  +  GK Y      +   S    G  I  L+++   + +
Sbjct: 537 TNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEFSRTAKGIPIINLLEVEKGEWV 596

Query: 603 VTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                 +       L   +  G +     S+     + G   L +   +++  V    G 
Sbjct: 597 NAIIPVEDFVDDWYLFFTTKHGISKRSPLSQFANIRKGGLIALGLRESDELISVKLTDGT 656

Query: 660 HVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
              ++  +   L+ F    +  M R   GV+  S  +    +V+  + + EGL  +    
Sbjct: 657 KEMIIGTKKGMLIRFHETDVRSMGRTATGVKGISISEN--DEVVGMELLDEGLDVLVVTK 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G        R+G+ +S
Sbjct: 715 NGYGKRTPAEEYRVQSRGGKGIKTCNITDRNGELVS 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E      A +       +      +  G  +              L AL  +E D L 
Sbjct: 589 EVEKGEWVNAIIPVEDFVDDWYLFFTTKHGISKRSPLSQFANIRKGGLIALGLRESDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T  +++ +  G        ++ S       ++  I ++ N ++V   + D   
Sbjct: 649 SVKLTDGTKEMIIGTKKGMLIRFHETDVRSMGRTATGVKG-ISISENDEVVGMELLDEGL 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV+  G        E    +R GK      +   + E + +    T + + ++  + 
Sbjct: 708 DVLVVTKNGYGKRTPAEEYRVQSRGGKGIKTCNITDRNGELVSVKTVTTEEDLMLITASG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            L+  S+D I +M R  +GV+L    +
Sbjct: 768 VLIRMSVDGISQMGRNTQGVKLIRLAE 794


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/762 (34%), Positives = 423/762 (55%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    
Sbjct: 2   DFNEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  + LIDNPE ++ +L+  I GPDFPTG  I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIM-GKAGIRAAYETGKGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA   +EE   G   I+VTEIPYQV K++L+E IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRANAEIEEE-NGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P +++  ++  + ++  F + M  L     P+V+ L  IL+ ++  ++E
Sbjct: 300 RIVIELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNE-PKVLNLKQILENYVEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I+IIRN +     K  ++ RF L+E Q
Sbjct: 359 VITRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E + L+ + E + S+L S ++  + I  E+ E+K  +S
Sbjct: 419 SQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYS 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R +  E    +     + +I++E + + +++ G+I+          +     
Sbjct: 479 DE------RKSKIEKIVNEIDI--EDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           + A+  KE D ++  +   T   +L  +  G+ Y L A  +     +  G  +  LI + 
Sbjct: 531 IQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIE 590

Query: 598 HNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T        K   L + + +G       SE     + G   + +   +++  V 
Sbjct: 591 PDEKIQTVLTVTDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD ++ VV +N   + F+   +  M R   GV+  + K+  I+  +C  I  +G   
Sbjct: 651 NTYGDANIMVVTQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIA--VCMDIAVDGEEL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +        L  RGGVG +  K   ++GK   +
Sbjct: 709 LVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGA 750



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     +  L     +KE    + + +G ++              L A+  K+GD L  
Sbjct: 589 IEPDEKIQTVLTVTDEKKEGFLFMGTKQGIVKKTPLSEFKNLRKNGLIAISLKDGDELLK 648

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             + +    I++++ +G A      ++ S       ++  I+L  +   V   +     +
Sbjct: 649 VKNTYGDANIMVVTQNGYAVKFNERDVRSMGRTASGVKA-INLKEDDIAVCMDIAVDGEE 707

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           LLV+S  G       +E     R G   +     EK   +   T     D + ++  +  
Sbjct: 708 LLVISENGYGKRTPIAEYKLQNRGGVGLITYKISEKTGKLAGATICKVDDELMLINSSGV 767

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +  ++  I   SR   GV L    +      I 
Sbjct: 768 AIRINVADISVTSRSAMGVTLMRTNEDEKVVAIA 801


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/789 (34%), Positives = 409/789 (51%), Gaps = 63/789 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 DRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LIDN   +I++L+E I GPDFPTGGI +  R+ I E+YR GRG   VRA+ 
Sbjct: 188 TEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGI-INGRKGIFEAYRTGRGKIYVRAKT 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++   
Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++++ +++  + M+T F +NM  L+ G+ P++  L  +L+ ++ HRREV+ RR+
Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQ-PKIFNLKEMLEAFIRHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------- 417
            + ++    R  IL+GL IA  NID II +IR    P                       
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEK 425

Query: 418 ------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ LT  Q  AIL+LRL+ L  LE   I  E  +LL +  
Sbjct: 426 AGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S ++    I  E+  VK  +              E+S A      + +I +E 
Sbjct: 486 ELLHILGSTERLMEVIREELEAVKTQYGDE--------RMTEISAASADISMEDLITQED 537

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S++G+++          +      SA   K+ D ++  L A+T D IL  S+ GK
Sbjct: 538 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGK 597

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y +    L   S    G  I  L+ L   + I        Y +   +L  ++KG     
Sbjct: 598 VYWMRVFQLPLASRTARGRPIVNLLPLGEGERITAILPVEEYSADKFILFATAKGTVKKT 657

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             +        G   + ++ ++++  V    G + V +  +  K++ F+ DQ+  M R  
Sbjct: 658 ALNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMGRTA 717

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR  +  +G    V      E    +      + +           R   G +  K  
Sbjct: 718 TGVRGINL-EGSDRVVSLIVPDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISIKVS 776

Query: 745 PRSGKFLSS 753
            R+G  + +
Sbjct: 777 ERNGLVVGA 785



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   +  + +G ++    ++        + A++  + D L      
Sbjct: 628 ERITAILPVEEYSADKFILFATAKGTVKKTALNAYSRPLSSGIRAINLADDDELIGVNIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + ++L S  GK        + +       ++  I+L  +  +V+  V D    +L V
Sbjct: 688 EGNNEVMLFSDAGKVVRFNEDQVRAMGRTATGVRG-INLEGSDRVVSLIVPDEDGAILTV 746

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIF 673
           +  G      + E    +R  KG   +KVS    + +  V     D + ++     L+  
Sbjct: 747 TENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDEIMLITNRGTLVRT 806

Query: 674 SIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLT 710
            + ++ E+ R  +GVRL    +G    G+  +   ++ E L 
Sbjct: 807 RVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESLL 848


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/755 (33%), Positives = 419/755 (55%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSA
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY LI G GNFG++DGD+AAA RYTEARM
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++V+  +L+ +++D +D++D Y+  + EP+V P++FPNLL NG++GIAVGMAT+IP H +
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA+  +P+I+I +L+E I GPDFPT G I+  R  I ++Y  G+G   VRA+ 
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE   G   I+V E+PYQV K++LIEKIAEL   K+I  + D+RDES      ++   
Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++L+ +++  + ++T F +N   L  G+ P+V+ L   L+ +L H+  V+ RR+
Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+D +IA+IR     D  +  ++++FSL+E Q  AIL+
Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E  +LLA   ++ ++L   ++    I  E+ EVKE F+      
Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    VS   +    + +I ++ I + +++ G+I+          +     +  ++ 
Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ--- 600
            E D ++  L   T D IL  +  GK Y      +        G  I  L++++  +   
Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAKGIPIINLLEVDKGEWVN 599

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            I+    +     L   + +G +     S        G   L +  E+++  V    G  
Sbjct: 600 AIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELISVKLTDGKR 659

Query: 661 VAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
             V+  +   L+ F+ + +  M R   GV+  +       +VI  +I E  +  +     
Sbjct: 660 DMVIGTKKGMLIRFNENDVRSMGRTATGVKGITL--DSEDEVIGMEILEEQSDVLIITKN 717

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G        ++G  ++
Sbjct: 718 GYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A ++      +      + +G  +     S        L AL+ +E D L 
Sbjct: 591 EVDKGEWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNSGLIALNLREEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G        ++ S       ++  I L+   +++   + +   
Sbjct: 651 SVKLTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATGVKG-ITLDSEDEVIGMEILEEQS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L+++  G        E    TR GK      +   + + + L      + + ++  + 
Sbjct: 710 DVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIMLITVSG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            L+  S+  I +M R  +GV++    D      + 
Sbjct: 770 VLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVA 804


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LGR
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/795 (31%), Positives = 402/795 (50%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  ++++L+E I  PDFPTGGI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACTVDELIEIIPAPDFPTGGI-IYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IV+  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVRDMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I+ E++ +K  FS +T   RR     E+         + 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRS----EIELNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + I        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  ++ K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++      +     E  T + +    Y +           RG  G 
Sbjct: 724 PMGRNARGVRGMMLEETQTVIALLVAGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTTSRNGKVVGA 798



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 11/203 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
                 L      ++    + ++RG ++              + A+   +GD L  A   
Sbjct: 640 EKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLT 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                ++L S  GKA      ++     +   ++ ++       I      D T  +L  
Sbjct: 700 DGKHDVMLFSDSGKAVRFDENDVRPMGRNARGVRGMMLEETQTVIALLVAGDETQTVLTA 759

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G        E   + R  K  + +   S   K+   V V   D + ++     L+  
Sbjct: 760 TENGYGKRTPIGEYTRHGRGTKGMIAIQTTSRNGKVVGAVLVNPTDEIMLITTGGVLVRT 819

Query: 674 SIDQIPEMSRGK-GVRLQSYKDG 695
            + +I EM R   GV L +  DG
Sbjct: 820 RVAEIREMGRATQGVTLINVDDG 842


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/739 (50%), Positives = 533/739 (72%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTT 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ 
Sbjct: 481 IGARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 HLLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W           E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSWNSGGKVKL---EKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 415/756 (54%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     FKKS
Sbjct: 8   NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H 
Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 SNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ ++ RR
Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  ++DE+IA+IR        +  ++  +SL+E Q  AIL
Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEIKERFND---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    V+   +    + +I  E I + +++ G+I+          K     +  + 
Sbjct: 482 -TRRTEI--VTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  +   T D IL  S  GK Y      +        G  I  L+++   + I
Sbjct: 539 TNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L   +  G +     S+       G   L +  E+++  V    G+
Sbjct: 599 NAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELMAVRLTNGE 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             + +  +   L+ F    + EM R   GV+  +  +  I  V+  +I E     +    
Sbjct: 659 KQIIIGTKKGMLIRFDETDVREMGRTAAGVKGITLSEDDI--VVGMEILEPDANVLIVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +   +    +  RGG G    K    +G  ++
Sbjct: 717 KGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVA 752



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 16/222 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +  +  ++       +  G  +           +  L AL  ++ D L 
Sbjct: 591 EVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +   +I++ +  G        ++         ++  I L+ +  +V   + +   
Sbjct: 651 AVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTAAGVKG-ITLSEDDIVVGMEILEPDA 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG----DHVAVVGE 666
            +L+V+ KG   +  E E    +R GK     K++      + VK T     + + ++  
Sbjct: 710 NVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVAVKATNAEAEEDLMIITG 769

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  ++  ++  I    R  +GVRL     G    V    + E
Sbjct: 770 SGVIIRMAVSDISTTGRVTQGVRLIRL--GDEEHVATVALVE 809


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 403/795 (50%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E  L  + NPE +I++LLE I  PDFPTGGI +     + E YR GRG   +RA+   
Sbjct: 190 VVEGCLYCLRNPECTIDELLEIIPAPDFPTGGI-IYGMVGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLISYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------ 422
           F+++    R  +L+GL +A  NID+ IAII+    P   +  +++R              
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVREMLARA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++     +  +L   ++    I  E++ +K  FS      RR     E+         + 
Sbjct: 488 VMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRS----EIELNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPMDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + I        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSDDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  ++ K + F  + + 
Sbjct: 664 GTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    +D      +     E  + + +    Y +  +        RG  G 
Sbjct: 724 PMGRAARGVRGMMLEDSQSVIALLVAGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G+ + +
Sbjct: 784 IAIQTSSRNGRVVGA 798



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 11/203 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L       +    + ++RG ++              + A+   EGD L  A   
Sbjct: 640 EKITVVLPVKEFSDDHYVFMATSRGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLT 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                ++L S  GKA      ++         ++ ++  +    I      D +  +L  
Sbjct: 700 DGKHDVMLFSDSGKAVRFDENDVRPMGRAARGVRGMMLEDSQSVIALLVAGDESQSVLTA 759

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G       +E   + R  K  + +   S   ++   V V   D + ++     L+  
Sbjct: 760 TENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVNPSDEIMLITTGGVLVRT 819

Query: 674 SIDQIPEMSRGK-GVRLQSYKDG 695
            + +I EM R   GV L S  DG
Sbjct: 820 RVSEIREMGRATQGVTLISVDDG 842


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/797 (31%), Positives = 401/797 (50%), Gaps = 64/797 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+++PE  +E L+E +  PDFPT G+ +     + E YR GRG  
Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGL-IYGLHGVHEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +RAR  +E +G+      I+V E+PYQV K  L+E+IAEL+  K++  + +IRDES + 
Sbjct: 241 VMRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKS 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L HR
Sbjct: 301 GMRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGK-PRLLNLKQMLVCFLEHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
           REV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P               
Sbjct: 360 REVVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSP 419

Query: 422 ------------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L++ Q  AIL LRL+ L  LE+ +I  E 
Sbjct: 420 LVEEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++     +  +L   ++    I  E+  ++  F        RR+   E+  +      
Sbjct: 480 REVMDLITDLLDILARPERITAIIVEELTAIRNQFGDP-----RRS---EIVLSTAEINI 531

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V +S+ G+         R+ +       A   K+ D +     A+T D +
Sbjct: 532 EDLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTV 591

Query: 564 LLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+AY L    +  G     G+ I  L  L   + I        +D    + + +
Sbjct: 592 LCFSSRGRAYWLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
           S+G       +      + G   + +   + +  V    G+  V +  +  K + F+   
Sbjct: 652 SEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESD 711

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR  + +DG     +     E  + + +    Y +           RG  
Sbjct: 712 VRPMGREARGVRGMTLEDGQRVIAMLVAKGETQSVLTATENGYGKRTPVAEYTRHGRGTK 771

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK + +
Sbjct: 772 GMIAIQTSDRNGKLVGA 788



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 16/230 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     ++E    + ++ G ++              + A++  +GD L      
Sbjct: 630 EKITAVLPVQTFDEEHFVFMATSEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAIT 689

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLV 616
                ++L S  GKA      ++         ++ +  L   Q ++   V    T  +L 
Sbjct: 690 DGECDVMLFSDAGKAVRFAESDVRPMGREARGVRGM-TLEDGQRVIAMLVAKGETQSVLT 748

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLI 672
            +  G       +E   + R  K  + + + ++   +   V V   D V ++     L+ 
Sbjct: 749 ATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGAVLVDPTDEVMLISTGAVLIR 808

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDG---GISDVICFKICEGLTWIDSAGRS 718
             +  I E+ R   GV L +  +G      + +     E    ++     
Sbjct: 809 TKVQDIRELGRATQGVTLINLDEGTYLAGIEKVAESGAEADELVEGGEEG 858


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/736 (54%), Positives = 534/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EP+V P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP +LMES+F LS++E+R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I  +IR VK+ F   T LG+
Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  +L+ + FK  D+LK+A
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +    +  L+V   GDHVAV   ++ +L+F 
Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+ RGKGVRLQ  +   ++D   F + EGL W D +G++   +   L  W+G R 
Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGTLMTRSFPKFERF 746


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 408/795 (51%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F+++    R  +L+GL +A  NID+ IAII+    P   +  +++R              
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I+ E++ +K  FS S    RR     E+         + 
Sbjct: 488 VMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRR----AEIEVNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + +        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++G     +     E  + + +    Y +           RG  G 
Sbjct: 724 PMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G+ + +
Sbjct: 784 IAIQTSSRNGRVVGA 798



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++    + ++RG ++              + A+   +GD L  A        ++L S  G
Sbjct: 653 EDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEES 629
           KA      ++     +   ++ ++ L   Q ++   V  D T  +L  +  G       +
Sbjct: 713 KAVRFDENDVRPMGRNARGVRGMM-LEEGQTVIALLVAGDETQSVLTATENGYGKRTPIT 771

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E   + R  K  + +     +   +  V+ +  D + ++     L+   + +I EM R  
Sbjct: 772 EYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRAT 831

Query: 686 -GVRLQSYKDG 695
            GV L S  DG
Sbjct: 832 QGVTLISVDDG 842


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|332381517|gb|AEE66364.1| DNA gyrase subunit A [Bordetella pertussis CS]
          Length = 893

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/795 (32%), Positives = 407/795 (51%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F+++    R  +L+GL +A  NID+ IAII+    P   +  +++R              
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARV 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L    +    I+ E++ +K  FS S    RR     E+         + 
Sbjct: 488 VMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRR----AEIEVNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + +        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++G     +     E  + + +    Y +           RG  G 
Sbjct: 724 PMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G+ + +
Sbjct: 784 IAIQTSSRNGRVVGA 798



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++    + ++RG ++              + A+   +GD L  A        ++L S  G
Sbjct: 653 EDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEES 629
           KA      ++     +   ++ ++ L   Q ++   V  D T  +L  +  G       +
Sbjct: 713 KAVRFDENDVRPMGRNARGVRGMM-LEEGQTVIALLVAGDETQSVLTATENGYGKRTPIT 771

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E   + R  K  + +     +   +  V+ +  D + ++     L+   + +I EM R  
Sbjct: 772 EYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRAT 831

Query: 686 -GVRLQSYKDG 695
            GV L S  DG
Sbjct: 832 QGVTLISVDDG 842


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/741 (51%), Positives = 520/741 (70%), Gaps = 8/741 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    +  AL  RYLAYALSTI  RA+PD+RDG KPVHRRI++AM +M L  G +++K
Sbjct: 16  ETIIEEPMGEALSRRYLAYALSTITARALPDIRDGLKPVHRRILYAMRQMRLGSGGSYRK 75

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA++ G+V+G  HPHGDQ++YD++VRL Q F  R PLI GQGNFGNIDGD+AAA RYTE 
Sbjct: 76  SAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFGNIDGDNAAAMRYTEC 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+ AEL+L+G+D D VDFR+TY+ E  EPVV P+ FP+LLANG+SGIAVGMAT+IP H
Sbjct: 136 RLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANGSSGIAVGMATNIPPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A L LI  P    E LL Y+ GPD PTGG+ +ES++ + E+Y  GRGGFR+RA
Sbjct: 196 NVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDLAEAYATGRGGFRIRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG + IVVTEIPYQVQKS+L+E+IA+LI  K++P+L D+RDESAED+R+VL 
Sbjct: 256 RWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLTDVRDESAEDIRLVLE 315

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK  SLDP+ +M +IF L+D+ETR  LN+NV+     P V  L   L+ +L HRR+VL R
Sbjct: 316 PKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLRDCLQAFLDHRRDVLLR 375

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
            + +R+  I  R+EIL G LIAYLN+DE+I IIR ED PK  +++ F L+E Q +AILN+
Sbjct: 376 GTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKAELMATFDLSEIQTEAILNM 435

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E  +L AE++ + +LL S   QW +IA +++E ++ F   +DLGR
Sbjct: 436 RLRSLRKLEEMELKREHKDLKAEQKDLQALLKSEDIQWERIAGQLKETRKSFDPRSDLGR 495

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT   +    ++  L + +IEKEP+TVVIS +GW+R+LK H  D +++ +K+GD  +  
Sbjct: 496 RRTALSDAPITEEVDLDE-LIEKEPVTVVISEKGWVRALKGHVEDKASIKYKDGDQGRFV 554

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L A TTD+++L+ST+G+ + L   +L  GRGHGE  +L++DL +  D++  F+Y     L
Sbjct: 555 LPAMTTDKVILVSTNGRFFALDVKDLPGGRGHGEPFRLMVDLTNEHDLIDVFLYQGDRTL 614

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVGENRK 669
           L+ SS G+   V E +++A TRKGK  L V++  + ++   +T      D++A +G NRK
Sbjct: 615 LLASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAAPGPNDYLATIGSNRK 674

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LLIF    +P M +GKGV LQ   +G + D  CF   EGLTW D AGR    S  +   W
Sbjct: 675 LLIFPAGDVPVMVKGKGVVLQKITNGTLVDAKCFSPEEGLTWTDRAGRQQ--SAEEWKEW 732

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +GKR   G L PKGFPR+ +F
Sbjct: 733 VGKRAQAGKLPPKGFPRANRF 753


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAAIHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGSVVGA 785



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 13/223 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E +    A L  +    E    + +  G ++           S  L A++ +E DSL   
Sbjct: 625 EENERITAILPVSEFSPEKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITDGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGSVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTW 711
           +   + ++ ++ R  +GV L    +D  +  +      E    
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESDL 846


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/760 (33%), Positives = 420/760 (55%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FNEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L++G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+ ++++ VDF   ++ E+ EP V P++FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+      LIDNPE++I +L+  I GPDFPT GII+  +  I ++Y  GRG   
Sbjct: 182 PPHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIIL-GKLGIRDAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE  +G   I+VTEIPYQV K++LIE IA+L+  K+I  + DIRDES  +   
Sbjct: 241 VRAKTDIEEE-KGRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + M+  F + M  L   + P+V+ L  IL  +L  ++EV
Sbjct: 300 IVIELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNK-PEVLNLKQILVHYLEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N ++ K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E   L      +  +L   +     I  E+ E+K  +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+ + D     + +I+++ + V +++ G+I+          K     +
Sbjct: 479 -----DRRT---EIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A+  KE D ++      T + IL  +  G+ Y L    L        G  +  L+ +  
Sbjct: 531 QAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIET 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +D T   ++ + +G     + S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            TG+  + V  +N   + F+   +  M R   GV+  + +   I+ V    +CEG   + 
Sbjct: 651 TTGESEILVFTKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIA-VAMDIVCEGQDVLV 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +          +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGA 749



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E +   +A +     +K    ++ + +G I+  +           L+A++ +E D L  
Sbjct: 588 IETNEKIQAVITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIG 647

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    IL+ + +G A      ++         ++  I L      V   +      
Sbjct: 648 VRMTTGESEILVFTKNGYAIRFNERDVRPMGRTATGVKA-ITLRKEDIAVAMDIVCEGQD 706

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +LV+S  G       SE   + R GK  +     EK   +V        D + +V  +  
Sbjct: 707 VLVISENGFGKRTPVSEYTPHRRGGKGMITYKITEKTGAIVGARVVKDEDEMMLVNSSNV 766

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +  ++  I   SR   GV L    +      I 
Sbjct: 767 AIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIA 800


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 49  ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 108

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 109 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 168

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 169 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 228

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 229 SEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 287

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 288 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 347

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ RR
Sbjct: 348 VKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAFVRHRREVVTRR 406

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 407 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLE 466

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 467 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFI 526

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V++ F       +RRT   E++        + +I +E
Sbjct: 527 AELIFILQSPDRLMEVIREELEAVRDQFGD-----QRRT---EITANSSDINIEDLINQE 578

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 579 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 638

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 639 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKK 698

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M R 
Sbjct: 699 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSMGRT 758

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +  +G    VI   +  G    +      Y +           R   G +  K
Sbjct: 759 ATGVRGINLGEG--DSVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIK 816

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 817 VSERNGQVVGA 827



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 16/231 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 667 EADERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 726

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK    P   + S       ++  I+L     +++  V      +
Sbjct: 727 DLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATGVRG-INLGEGDSVISLIVPRGEGDI 785

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V   T D + ++ +   L
Sbjct: 786 LTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETTDQIMMITDAGTL 845

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +     G+  V      E L  I+   
Sbjct: 846 VRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSIEPGE 896


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/759 (33%), Positives = 414/759 (54%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   QGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R
Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIV-GKSGIRKAYETGRGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   ++
Sbjct: 243 SKAEIEEE-KGRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+ 
Sbjct: 302 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLKHYIKFQEEVIT 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  +IDE+I +IR      + +  ++SRF L+E Q  A
Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQATA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +    
Sbjct: 421 ILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYGDE- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   +    D     + +IE++ + + +++ G+I+          K     + A
Sbjct: 480 ----RRSEIIQGEGNDIDI--EDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D ++  + A T D IL  +  G+ Y L A  +        G  +  LI L+  +
Sbjct: 534 MTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L++ + KG        +  +  + G   + +  ++++      T
Sbjct: 594 KIQNVIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELVSARVTT 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           GD ++    +N   + F  + +  M R   GV+  + ++    +V+  ++  E   ++  
Sbjct: 654 GDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLRED--DEVVSMEVASENRDFLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGA 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +     +  +     +K+   ++ + +G I+              L+A++ +E D L
Sbjct: 587 IPLDKEEKIQNVIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDEL 646

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A        I+  + +G A      ++         ++  I L  + ++V+  V    
Sbjct: 647 VSARVTTGDCNIIYATKNGYAIRFHENDVRPMGRTATGVKA-ITLREDDEVVSMEVASEN 705

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
              LVVS  G        +     R GK  +     EK   +     V   D + ++ ++
Sbjct: 706 RDFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGARSVEDQDELMLINDS 765

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVICFKICEG 708
              +  ++  I   SR   GV L     +  +  +    I E 
Sbjct: 766 GIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISEN 808



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 76/218 (34%), Gaps = 27/218 (12%)

Query: 465 LNSGKQQWNQIACEIREVKE----IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+  ++  N I   ++E K+    I      L ++ +     S          + E + +
Sbjct: 589 LDKEEKIQNVIY--LKEFKKDKFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDEL 646

Query: 521 T-----------VVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                       +  +  G+        +R +   +  + A+  +E D +     A    
Sbjct: 647 VSARVTTGDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVVSMEVASENR 706

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
             L++S +G     P       +  G+ +           ++ A   +   +L++++  G
Sbjct: 707 DFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGARSVEDQDELMLINDSG 766

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
            A  +  S+I   +R   G T ++    EK+  + KV 
Sbjct: 767 IAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVN 804


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/766 (49%), Positives = 522/766 (68%), Gaps = 21/766 (2%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +++     +  +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  
Sbjct: 24  DGMTDFRDPFD-AIKDHPFDEALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRL 82

Query: 64  MGLDFGAA---------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           + ++ G A               +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R
Sbjct: 83  LRMEPGGASADVLTANPARNTTAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLR 142

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
            PL+ GQGNFGNIDGD+AAA RYTEAR+TQ A  ++ G+DE  VDFR TYN ED EP VF
Sbjct: 143 TPLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVF 202

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P  FPNLLANG SGIAVGMATSIP HNV E+ +AA  LID+P+     L++ + GPDFPT
Sbjct: 203 PGLFPNLLANGASGIAVGMATSIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPT 262

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           GG++V+S   I E+Y  GRG FR RARW  E+ GRG+W  VVTEIPYQVQKS+LIE+IA 
Sbjct: 263 GGVLVDSPSIIAEAYATGRGAFRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAA 322

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           LI  K++P+L D+RDES  D+RIV+ P+ R++D  +LM+S+F L+D+E RFPLN+NVL  
Sbjct: 323 LINDKKLPILADVRDESDADIRIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDS 382

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P+V+ L  +L EWL H+ +VL RR+  R+  I  RVE+L G +IAYLN+D +I IIR
Sbjct: 383 THTPRVLGLKPLLVEWLRHQIDVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIR 442

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            ED+PK VM+  F LT+ Q +AILN+RLRSLRKLEE +++ E D LL E+++++ L+ S 
Sbjct: 443 TEDEPKEVMMVEFGLTDRQAEAILNMRLRSLRKLEEMELRREHDELLKERDELEKLVESP 502

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q  ++  ++  +++ +   TDLGRRRT   E +   +    +AMIE+EPITV++S RG
Sbjct: 503 ARQRTRLKKDLAALRKRYGPETDLGRRRT-LVEEAAPAREIPLEAMIEREPITVILSERG 561

Query: 529 WIRSLKSHSVDLSA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           WIR++  H    +A  L FKEGD  + A HA+TTD++LL ++ G+ +TL +  L  GRG 
Sbjct: 562 WIRAMSGHRDLAAADTLKFKEGDGPQFAFHAYTTDKLLLATSTGRVFTLSSDKLPGGRGF 621

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G+ ++ L+D+++   IV      +   LL+ SS G  FI   ++I+A TRKGK  + V +
Sbjct: 622 GDPVRSLVDMDNEGAIVALMPARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRA 681

Query: 647 EEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704
             ++ +V  VT   D +AV+GENRKLL+F+I ++P M+RG+GV+LQ Y+DGG+SD I F+
Sbjct: 682 GARLAVVHPVTADADSIAVIGENRKLLVFAISEMPRMARGQGVQLQRYRDGGLSDAIAFR 741

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +GLTW         R+E D+  W   RG  G + P GFPR  +F
Sbjct: 742 LADGLTWAMGGDSGRTRNETDMTPWKVARGAAGRMPPNGFPRDNRF 787


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/735 (53%), Positives = 527/735 (71%), Gaps = 2/735 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++   +   AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM E+ L+   AFKKS
Sbjct: 11  HIIEETFNEALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELKLNPDQAFKKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQSVY++LVRLAQ F  RYPL+ GQGNFGNIDGD AAA RYTEAR
Sbjct: 71  ARVVGDVIGKYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDGAAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ AEL+LQ +D+  VDF +TY+  + EP+V P  FPNLLANG++GIAVGMATS+P HN
Sbjct: 131 LTKAAELLLQDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAVGMATSVPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AALALID PE   E LL++I GPD PTGG IVE  E+I  +Y  GRGGFRVRA+
Sbjct: 191 VAEICAAALALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYETGRGGFRVRAK 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E++GRG W IVVTEIPY VQKS+L+E+IA+L+ AK++PLL+D+ DES ED+R+VL P
Sbjct: 251 WEKEDIGRGMWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDESTEDIRLVLEP 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K++ +DPD+LMES+F L+D+ETR  LN+NVL    VP+VM L  +L+ WL HRREV  RR
Sbjct: 311 KSKLVDPDMLMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWLEHRREVAVRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           ++ R+  ++ R+E+L G LI Y ++DE+I IIR ED+PK  +++ F LTE Q +AILN+R
Sbjct: 371 ATTRLAKVEDRLEVLAGYLIVYADLDEVIRIIRFEDEPKAKLMAHFELTERQAEAILNMR 430

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR+LRKLEE +I+ E  NL AE++ +  L+ S   QW+++  E++ + EI++++T LG+R
Sbjct: 431 LRALRKLEELEIRKEDTNLRAERKTLKELIGSTALQWDKVRGEVKSLGEIYAETTPLGKR 490

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F +          +A + +EPIT V+S RGW+R+LK H  D++ L FKEGD    A+
Sbjct: 491 RTVFDKAPDISGEAPIEAFVVREPITAVLSERGWVRALKGHINDVTELKFKEGDKSAFAV 550

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              TTDR+L+ +TDGK YTL A  L  GRGHGE ++L +DL  +   +  F YD    LL
Sbjct: 551 KCETTDRLLMFATDGKFYTLEASKLPGGRGHGEPVRLHVDLPDDAAPIGLFKYDPERTLL 610

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V S   + F ++E + +A  + GK  L ++  ++  L +  TGD VA++GEN+KLL+F +
Sbjct: 611 VASDGNSGFRIQEKDCLALKKGGKQILNLAEGDEAFLCIPATGDRVALIGENKKLLVFEL 670

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           ++IP MSRGKGV+L   K   ++D   F   +GLTW+D AGR +N   +D L W  KR  
Sbjct: 671 EEIPVMSRGKGVKLLGGKGAKLADATVFNAEDGLTWLDGAGRRFNL--DDWLLWTAKRAQ 728

Query: 736 VGSLVPKGFPRSGKF 750
            G + P+GFPRS +F
Sbjct: 729 AGKMAPRGFPRSLRF 743


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 419/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I++L+EYI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAM-ISGRKGIIDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                + + LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+  VKE F+ +     RRT   E++ A      + +I +
Sbjct: 484 IAELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLINQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      +A   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  E+ +  V    G + + +  +  K++ F+  Q+  M R
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     +G   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGIKLAESDNVVSLIVPHNDGD-VLTVTENGYGKRTELEEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGSVVGA 785



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E +    + +  G ++        +  S  + A++ ++ D+L   
Sbjct: 625 EENERITAILPVKEYEADKFVFMATADGTVKKTPLTDFSRPRSAGIIAVNLRDEDTLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + I+L S  GK      G + +       ++  I L  + ++V+  V  +   +
Sbjct: 685 DITDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAAGVRG-IKLAESDNVVSLIVPHNDGDV 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E  E  A +R   G   +KVS      +  V  + GD   ++     L
Sbjct: 744 LTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +D  +  +      +    I+ A 
Sbjct: 804 VRTRVAEVSRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDIIEDAE 851


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 414/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NID+II +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E++ V++ +  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  M R
Sbjct: 656 KTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +G     +     +G   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLMEGDQVVSLIVPKTDGD-ILTVTENGYGKRTVLAEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 775 VSERNGRVVGA 785



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L       +    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EDNERITAILPVTEFSDDKFIFMATGDGTVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSEIMLFSKSGKVVRFNEDQVRAMGRTASGVRGM-KLMEGDQVVSLIVPKTDGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E  A +R   G   +KVS      +  V    GD   ++     L
Sbjct: 744 LTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTSED 829


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/795 (31%), Positives = 398/795 (50%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGG ++     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPACSVDELMEIIPAPDFPTGG-VIYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F+++    R  +L+GL +A  NID+ IAII+    P        +               
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I  E++ +K  FS      RR     E+         + 
Sbjct: 488 IMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRS----EIELNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + I        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    +D      +     E  + + +    Y +           RG  G 
Sbjct: 724 PMGRNARGVRGMMLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTSSRNGKVVGA 798



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 12/209 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +       +   E   +  + ++RG ++              + A+   +GD L
Sbjct: 635 PLAEGEKITVVLPVKEFSEDHYV-FMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A        ++L S  GKA      ++     +   ++ ++  +    I      D T
Sbjct: 694 IGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGMMLEDTQNVIALLVAGDET 753

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E   + R  K  + +     + + +  V+ +  D + ++   
Sbjct: 754 QSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIMLITTG 813

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
             L+   + +I EM R   GV L +  DG
Sbjct: 814 GVLVRTRVAEIREMGRATQGVTLINVDDG 842


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/755 (33%), Positives = 413/755 (54%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   + E ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSA
Sbjct: 9   IINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ VDF   Y+ E++EPVV P+++PNLL NG  GIAVGMAT+IP HN+
Sbjct: 129 SKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +   ALI+NP+I+  +L++YI GPDFPT G I+  R  I ++Y+ GRG   +RA+ 
Sbjct: 189 GEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+G     I+V E+PYQV K+RL+EKIAEL+  KRI  + D+RDES      ++   
Sbjct: 248 TIEEIGN-KARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + M++ F +NM  +     P+++ L  +L  +L H+ EV+ RR+
Sbjct: 307 RRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNE-PKILNLKDVLYYYLKHQIEVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  ++DE+I++IR+    +        RFSLT  Q  AIL+
Sbjct: 366 EFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E + L+ +  +   +L +     N I+ E+ E+K  F+      
Sbjct: 426 MRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFAD----- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  +++ L + +I +E + + +++ G+I+          K     +  +  
Sbjct: 481 DRRT---EITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++     ++   +L  +  GK Y + A  +   S    G  I  LI +   + I 
Sbjct: 538 KDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESIN 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +     L   +  G        +     + G   + +  ++ +  V    G  
Sbjct: 598 AVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQ 657

Query: 661 VAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
             ++G      + F    +  M R   GV+  S  +     VI   I    L  +    +
Sbjct: 658 EMIIGTAQGMSIRFPESDVRSMGRSATGVKGISLDES--DAVIGMDIVNTDLDILIVTAK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +    +   +  RGG G        ++G  + 
Sbjct: 716 GYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVG 750



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 83/216 (38%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E   +  A +      ++      +  G I+              L A++ +E D+L
Sbjct: 588 IQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDAL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +++ +  G +   P  ++ S       ++  I L+ +  ++   + ++ 
Sbjct: 648 IEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATGVKG-ISLDESDAVIGMDIVNTD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L+V++KG        +    +R GK    ++  +K   VV +      + + ++  +
Sbjct: 707 LDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVGLKVVKAEEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  S+ +I  M R  +GVRL + +D      +C
Sbjct: 767 GTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVC 802



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 2/130 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  +  +   E D++      +T   IL+++  G     PA +       G+ 
Sbjct: 676 VRSMGRSATGVKGISLDESDAVIGMDIVNTDLDILIVTAKGYGKRTPAVDYRIQSRGGKG 735

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+ +   + N  +V   V  +   L+++++ G        EI    R   G   + +  +
Sbjct: 736 IKTINVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDD 795

Query: 648 EKMKLVVKVT 657
           + +  V +  
Sbjct: 796 DSVATVCRAN 805


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/781 (49%), Positives = 527/781 (67%), Gaps = 41/781 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +S+T +  N    +LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AMS + L
Sbjct: 3   DDSDTGLGPNDVTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRL 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ 
Sbjct: 63  SPSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARMT  AE +L+G+ ED+VDFRD Y+   +EP V P+ FPNLLANG+SGIAVG
Sbjct: 123 AASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG IVE  E+I E+YR G
Sbjct: 183 MATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAEAYRTG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR+RA+W VE++GRG+W IVVTEIPYQVQKS+LIEK+AE+I  K++PLL D+RDESA
Sbjct: 243 RGSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADVRDESA 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D+R+VL P+ +++DP+++M  +F  SD+ETRF LNMNVL  G  P+V  L  +L+ +L 
Sbjct: 303 DDIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFLE 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---- 422
           HRR+VL RRS +R++ ID R+E+L+G +IA+L++D +I IIR +D PK  ++        
Sbjct: 363 HRRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKALMIEDWAQDH 422

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L+E Q +AILN+RLRSLR+LEE ++ +E D L+ E+  
Sbjct: 423 VRATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERDALMEERAG 482

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I+ LL S   QW +IA ++RE ++IF + ++ G RRT F E +        +AMIE+EPI
Sbjct: 483 IEDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEV-VEVPLEAMIEREPI 541

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV S  GW+R++  H      L FK+GD  +   HA TTD++L+   +G+ YT+ A NL
Sbjct: 542 TVVCSQMGWVRAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLLVFGANGRFYTVGAANL 601

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG GE ++L+IDL ++ +IV   ++    KLLV S++GN F+V E E++A TR GK 
Sbjct: 602 PGGRGMGEPLRLMIDLPNDVEIVDFLIHKPGEKLLVASAEGNGFVVPEEEVVAQTRSGKQ 661

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693
            L V  +   K+  +V GDHVAVV EN K L+F + ++PEM+RGKGVR+Q YK       
Sbjct: 662 VLNVK-DTIAKVCHRVVGDHVAVVSENAKFLVFEVGELPEMNRGKGVRIQKYKKASGRQG 720

Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
               DGG+SD+  F   +GL+W    G+   R+E D+  W G R GVG   P GFP++ +
Sbjct: 721 MLELDGGLSDITTFTWDDGLSWAMGGGK--TRTEPDMTDWKGARAGVGKRPPYGFPKNNR 778

Query: 750 F 750
           F
Sbjct: 779 F 779


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 415/762 (54%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E  V ++ +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+ +MSE+GL    
Sbjct: 2   SLNEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 62  GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ + ++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE ++ +L+  I GPDFPTG  I+  +  I  +Y  G+G  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIM-GKSGIRAAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  D  
Sbjct: 241 IVRAKAEIEEE-NNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P++++  ++  + M+  F + M  L     PQV+ L  +L  ++  ++E
Sbjct: 300 RIVIELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNE-PQVLNLKQVLANYIEFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  IL+GL IA  NIDE+I IIR+       K  ++ RF L+E Q
Sbjct: 359 VVTRRTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RLR L  LE  +I+ E   L+   + ++S+L S ++  + I  E+ E+K  ++
Sbjct: 419 AQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRYN 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                   R T  E    D     + +I++E + + +++ G+I+          +     
Sbjct: 479 DE------RRTSIEKVVNDIDI--EDLIQEEEVVITLTHSGYIKRISADTYSSQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D ++      T   +L  +  G+ Y L A  +        G  I  LI + 
Sbjct: 531 IQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       SE     + G   + +   +++  V 
Sbjct: 591 QDEKIETVLSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD  + +V ++   + F+   +  M R   GVR  + +   I+  +C  I  EG   
Sbjct: 651 ITRGDADIVIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIA--VCMDIAVEGEDL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   + +          KRGG G +  K   ++GK + +
Sbjct: 709 LVISENGFGKRTPITEYKRQKRGGTGLITYKLSEKTGKVIGA 750



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     +  L       E    + + +G ++              L A++ ++GD L  
Sbjct: 589 IEQDEKIETVLSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLK 648

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++++ DG A      ++         ++  I+L  +   V   +      
Sbjct: 649 VKITRGDADIVIVTQDGNAIRFNETDVRPMGRTASGVRS-INLRKDDIAVCMDIAVEGED 707

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           LLV+S  G       +E     R G   +     EK   V+  T     D + ++  +  
Sbjct: 708 LLVISENGFGKRTPITEYKRQKRGGTGLITYKLSEKTGKVIGATICKIDDELMLINTSGV 767

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI-----CFKICEGLTWIDS 714
            +  ++  I   SR   GV L    +      I          E    +DS
Sbjct: 768 AIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLTLDS 818


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 AEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYLRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYALTQLQVTFGINMVAL-HQGQPKLLNLKDILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  VKE+++       RRT   E++        + +I +E
Sbjct: 486 AELIFILESPERLMEVIREELVAVKELYNDG-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +  +G    VI   +  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLGEG--DSVISLIVPRGEGDILTVTQNGFGKRTAVTEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 776 VSERNGQVVGA 786



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK    P   + S       ++  I+L     +++  V      +
Sbjct: 686 DLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATGVRG-INLGEGDSVISLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V   T D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETSDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/756 (34%), Positives = 423/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + ++  +E  +L YA+S I  RA+PD+RDG KPVHRRI+ AM ++G+     +KKS
Sbjct: 8   KVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VR+AQ F  RYPL+ G GNFG++DGDSAAA RYTE R
Sbjct: 68  ARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  +L+ +D++ +D++  ++E   EPVV PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 128 MAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+I+NPEI+ E L+ YI GPDFPTGGII+  R  I ++Y  GRG  ++RA+
Sbjct: 188 LDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIIL-GRNGIKDAYSTGRGKLKIRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I+VTEIPYQV K++LIE IA L+  K+I  + D+RDES  D   V+  
Sbjct: 247 TEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++L+  ++  + +E  F + +  L  G  P+V+ L  IL  +L  ++EV+ RR
Sbjct: 307 LKRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGE-PKVLSLREILDHYLEFQKEVIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  N+D +I +IR      + K  +++ FSL++ Q  AIL
Sbjct: 366 TKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   LL + +  + +L   +   N I  EI+E+KE +S     
Sbjct: 426 DMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSD---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
             RRT             ++ +I  E + + ++++G+++        + K     +S + 
Sbjct: 482 -SRRTLIT---NKTDELDEEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISGMT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K  D ++      T + IL  +  GK Y L    +   S +  G AI  L+ ++ ++ I
Sbjct: 538 TKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDEHI 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +     L  V+ +G A  V  SE+ A  + G   + ++ ++++  V    G 
Sbjct: 598 TAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTDGK 657

Query: 660 HVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
              ++  E    + FS +++  M R  +GV+  S KD     VI   I  E    +  + 
Sbjct: 658 QEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKDN--DRVIGMDIAQENSDLLIVSE 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G    K   +SG    
Sbjct: 716 NGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAG 751



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 14/220 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +      ++     ++ +G  + +    +       L A++  E D L  
Sbjct: 591 IDPDEHITAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELID 650

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I+L +  G A       + S   +   ++  I L  N  ++   +      
Sbjct: 651 VHLTDGKQEIILGTEQGLAIKFSEEEVRSMGRNSRGVKG-ISLKDNDRVIGMDIAQENSD 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRK 669
           LL+VS  G       SE    +R GK        EK   +   + V  D  + +V     
Sbjct: 710 LLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGV 769

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +    ++ I +MSR  +GVRL   KD     V+   I E 
Sbjct: 770 INRQQVEGISQMSRRTQGVRLIKLKDD--DQVVSLAIPES 807



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 20/192 (10%)

Query: 464 LLNSGK--QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +L+  K  ++   IA  + E  E+       G++               ++         
Sbjct: 625 ILSELKAYRKDGLIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEE-------- 676

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
                   +RS+  +S  +  +  K+ D +     A     +L++S +G     P     
Sbjct: 677 --------VRSMGRNSRGVKGISLKDNDRVIGMDIAQENSDLLIVSENGYGKRTPVSEYR 728

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GK 639
           +    G+ I        + ++    V +   ++++V+++G     +   I   +R+  G 
Sbjct: 729 TQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGVINRQQVEGISQMSRRTQGV 788

Query: 640 TFLKVSSEEKMK 651
             +K+  ++++ 
Sbjct: 789 RLIKLKDDDQVV 800


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/763 (35%), Positives = 417/763 (54%), Gaps = 35/763 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NP ++ E+L+E I GPDFPT G  +  RE IV +Y  GRG  +
Sbjct: 182 PPHNLSEVIDGIIAVIQNPLLTFEELIELIPGPDFPTAG-FIYGREGIVSAYGTGRGIIQ 240

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 241 MRARAMIETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P +L+  ++  + M++ F + M  +     P+V+ L   +  ++ HRRE
Sbjct: 301 RIVIELKKDENPQILLNHLYKQTQMQSSFGIIMLAIVNN-RPRVLTLRETINYFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           ++ RR+ F ++  + R  IL+GL IA  N+DE+I +I++     + K  ++SRF L+E Q
Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSRFGLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I +E   +L    ++  +L S  +  N I  E+RE+K+ F 
Sbjct: 420 AQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEILNIIVGELRELKDKFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+         +  I +E + V IS+ G+I+          +     
Sbjct: 480 DK-----RRT---EIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GRG-HGEAIQLLIDLN 597
            + +  KE D ++    A + D ++  +  GK Y L    +   GR   G+AI  L++L+
Sbjct: 532 KTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKAIVNLLNLS 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            N+ I        + +   +++ +  G        E       G   + +   +K+  V 
Sbjct: 592 TNEKITAILPVKEFTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITVA 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE----G 708
              G   V +  +N K + F    +  + R  +GVR  + +D  +  VI  +I       
Sbjct: 652 LTDGRQDVLLASKNGKSIRFKESDVRTVGRVSRGVRGMTLEDDDV--VIGMEILNENFTD 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            T        + +           RGG G +  K   R+G  +
Sbjct: 710 STLFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERNGCVV 752



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 75/214 (35%), Gaps = 15/214 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
           +    A L       +   ++ +  G ++              + A++  EGD L     
Sbjct: 593 NEKITAILPVKEFTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITVAL 652

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCK 613
                 +LL S +GK+      ++ +       ++ +  L  +  ++   + +       
Sbjct: 653 TDGRQDVLLASKNGKSIRFKESDVRTVGRVSRGVRGM-TLEDDDVVIGMEILNENFTDST 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRK 669
           L  V+  G     E SE    +R GK  + + + E+   VV        + + ++ +  K
Sbjct: 712 LFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERNGCVVDIKQVTDENDLMLITDQGK 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +L   +     + R  +GVRL   +D      + 
Sbjct: 772 ILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVA 805


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I +E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EDGERITAILPVDEFSADKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITTGSSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    L  IDN +I+I++L+E+I GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVV+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IAELMIILASTERLMEVIREELIAVRDGFGDE-----RRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  ++ +  V   TGD  + +  +  K++ FS D++  M R
Sbjct: 656 KTPLTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     +G   +      Y +        +  R   G +  K
Sbjct: 716 TAAGVRGMKLNDDDQVVSLIVPANDGD-VLTVTQNGYGKRTQLSEYPVKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSDRNGPVVGA 785



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 13/224 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L      ++    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDQFCEDKFIFMATGDGTVKKTPLTQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        + +       ++ +  LN +  +V+  V  +   +
Sbjct: 685 DITTGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLNDDDQVVSLIVPANDGDV 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     + SE     R   G   +KVS      +  V  V GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRNGPVVGAVQVVEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWI 712
           +   + ++ ++ R  +GV L    +D  +  +      +    +
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETDLV 847


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/736 (54%), Positives = 531/736 (72%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M  + LD  +AFKK
Sbjct: 11  DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD  AAYRYTEA
Sbjct: 71  CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA L+L G+DED VDFR +YN E  EPVV P+ FPNLLANG+ GIAVGMATSIP H
Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+C+AAL LI N E + E+L  ++ GPDFPTGGI+++S + I E+YR GRGGFRVRA
Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIREAYRTGRGGFRVRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW  E++GRG+W IVVTEIPY V K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL 
Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++RS+DP LLMES+F LS++E R PLN+NVL  G VP+V+ L   L+EW+ HRR VL R
Sbjct: 311 PRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           RSS+R+  I+RR+EIL GLLI YL++DE+I IIR ED+PK  +++RF LTE Q +AIL+ 
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLRSLRKLEE ++K E + L  EKE I++LL S K QW +I  +IR VK+ F   T LG+
Sbjct: 431 RLRSLRKLEEMELKREFEALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGK 490

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRTT              AM+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK++
Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             + TT +ILLL+++GK +T+ A  L  GRG G+ ++L++DL+   +IV A  Y    KL
Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LV  S G  FI     ++ANTRKGK  L +       L+V   GDH+AV   ++ +L+F 
Sbjct: 611 LVAGSDGRGFIAPSDALVANTRKGKAILGLDEGTSATLLVPAEGDHIAVCSSDKLMLVFP 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
             ++ E+SRGKGVRLQ  +   ++D   F + +GL W D +G++       L  ++G R 
Sbjct: 671 ASEVTELSRGKGVRLQRCRQSRLTDACVFTLADGLPWRDGSGQARLYQVAMLEKFMGHRS 730

Query: 735 GVGSLVPKGFPRSGKF 750
             G+L+ + FP+  +F
Sbjct: 731 DAGALMTRSFPKFERF 746


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 410/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  IL+GL +A  NIDEII +IRN   P                     
Sbjct: 364 RTIYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+E F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELESVREAFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVSEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSPEKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITDGQSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    D 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTADD 829


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 411/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFP   + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I +E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EDGERITAILPVDEFSADKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITTGSSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 420/761 (55%), Gaps = 35/761 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     ++KS
Sbjct: 6   KIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVY ++V++AQ F  R  L+ GQGNFGN+DGDS AA RYTEAR
Sbjct: 66  ARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +D++ VDF   ++E   EP+V P+K+PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +  IDN + + E L+E+I GPDFPTG +I+   E I E+YR GRG  RVRAR
Sbjct: 186 LGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMII-GTEGIKEAYRTGRGKVRVRAR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   IV+TEIP+QV KSRL+E+IA+L+  K++  + D+RDE+      V+  
Sbjct: 245 AEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRVVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ ++++ +++  S +E  F +    +     P+V+ L   L+ ++ H+++V+ RR
Sbjct: 305 LKRDVNANIILNNLYKHSQLEETFSIINLAIVDK-TPKVLNLKQYLECYVDHQKDVITRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  NID +I+IIR  +     K  ++  F+L++ Q  AIL
Sbjct: 364 TQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEEFALSDIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I +E   L+     ++S+L    + +  I  E+  +K+ ++     
Sbjct: 424 DMRLQRLTGLERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + + E+E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D +   +   T   +L  +  G+ Y L A  +  G+    G AI  L+ LN  + I
Sbjct: 536 TREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKI 595

Query: 603 VTAFVYDST-------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                +++          LL  +  G       S+     + G   + +   +++  V +
Sbjct: 596 ARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNINKSGLIAINLKDGDELIGVNR 655

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWI 712
             G + + +V EN   + F+ + +  M R   GV+  +   G    V+    I  G   +
Sbjct: 656 TNGEEDIILVTENGMSIRFNENDVRSMGRTATGVKGITLSKG--DHVVSMDLISNGTDLL 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + + + +           R G G        ++GK + +
Sbjct: 714 VVSEKGFGKRTETEEYRPQIRAGKGIKTYNINSKTGKLVGA 754



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  +  +   +GD +           +L++S  G                G+ 
Sbjct: 679 VRSMGRTATGVKGITLSKGDHVVSMDLISNGTDLLVVSEKGFGKRTETEEYRPQIRAGKG 738

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           I+     +    +V A + D   ++++++S G    +  +E  I      G   +K   E
Sbjct: 739 IKTYNINSKTGKLVGATLVDEDDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDEE 798

Query: 648 EKMKLVVKVTGDH 660
            ++  + K+ G+ 
Sbjct: 799 VEVVSIAKLKGEE 811


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYLRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  VKE+++       RRT   E++        + +I +E
Sbjct: 486 AELIFILENPDRLMEVIREELVAVKELYNDG-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +   N K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +  +G    VI   +  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINLGEG--DGVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 776 VSERNGQVVGA 786



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK    P   + S       ++  I+L     +++  V      +
Sbjct: 686 DLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATGVRG-INLGEGDGVISLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V   T D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I +E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F+ +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V   TG   + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EDGERITAILPVDEFSADKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITTGSSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/762 (34%), Positives = 419/762 (54%), Gaps = 30/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +       +K   +   + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+  
Sbjct: 2   AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEVIGK HPHGD SVY+++VR+AQ F  RY L+ G GNFG+IDGD AAA
Sbjct: 62  DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR++++A  +L+ ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +   ALI NPEI+  +L++Y+ GPDFPT GI++     I ++Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVM-GLSGIRQAYLTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RAR  +EE G     I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +
Sbjct: 241 TVTMRARATIEENGN-KARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRN 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R + P +++ +++  + M++ F +NM  L  G  P+ + +  +L  +L H+
Sbjct: 300 GMRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGE-PKTLNIREMLYYYLQHQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ + ++  + R  IL+GL IA  ++DE+IA+IR     D  +  ++ RF+L+ 
Sbjct: 359 IEVIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSY 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++E   L+ +  +  ++L   +   N I+ E+ E+KE 
Sbjct: 419 EQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKER 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   E++ +D+  L + +I +E + + I++ G+I+          K   
Sbjct: 479 FGDE-----RRT---EITVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  KE D ++    ++T   +L  +  GK Y L A  +   S    G  I  LI 
Sbjct: 531 KGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQ 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + I        +DS   L   + +G        + +   + G   + +  ++++  
Sbjct: 591 IEQGETINAVIPVESFDSESYLFFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDELIG 650

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+   V+G      + FS   +  M R   GV+     D      +     E   
Sbjct: 651 VKLTDGNQEIVMGTAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPENDV 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I +A + Y +        +  RGG G        ++G  +S
Sbjct: 711 LIVTA-KGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVS 751



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
              E      A +     + E      + +G ++       +    V L A+  +E D L
Sbjct: 589 IQIEQGETINAVIPVESFDSESYLFFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDEL 648

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +      ++ S       ++  I L+ +  ++   V +  
Sbjct: 649 IGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSMGRSATGVKG-IQLDDDDTVIDMDVVNPE 707

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGEN 667
             +L+V++KG       SE     R GK    ++  +K    + L V +  + + ++   
Sbjct: 708 NDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTAL 767

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+  S++ I  M R  +GV+L + +D      + 
Sbjct: 768 GTLIRTSMEGISTMGRNTQGVKLINTRDDDTVSTVT 803


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/739 (50%), Positives = 533/739 (72%), Gaps = 4/739 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRARW  EE+  G + IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+L+HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTT 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F +V+  ++     A I KEPIT++ S  GW+RSLK H+ DLS++ +KEGD+ 
Sbjct: 481 IGARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 HLLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W           E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSWNSGGKVKL---EKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKF 750
           KRG  G L P GFP++ +F
Sbjct: 717 KRGSTGKLPPMGFPKNNRF 735


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/759 (33%), Positives = 391/759 (51%), Gaps = 33/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    ++  +E  YL Y++S I  RA+PD+RDG KPV RRI++AM E G      F+K
Sbjct: 7   QRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+ K HPHGD +VYD++VR+AQ FV RYPL+ GQGNFG+IDGD  AA RYTEA
Sbjct: 67  SAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP H
Sbjct: 127 RLSRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID P+ISIE+L   I GPDFPTG +I+   E I  +Y+ G+G   +RA
Sbjct: 187 NLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALIL-GHEGIRRAYQTGKGSITLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   IVVTE+PY V K++LIE+IAEL   ++I  + D+RDES      +  
Sbjct: 246 RTQIETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  +F  + ++  F + M  L     P+++ L  +L  +L H+ EV+ R
Sbjct: 306 ELRRDANPHVILNQLFKYTALQQNFGIIMLALV-ENRPRLLNLKQMLHYYLQHQLEVIVR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GLL A   IDE+I  IR+    D+ +  ++S F  TE Q   I
Sbjct: 365 RTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFGFTEVQAQHI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++LR L  LE  +++ E D L        ++L S K Q++ I  E+ E+K+ +     
Sbjct: 425 LDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDP-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSAL 543
              RRT        D     + +I  E + V IS+ G+I+          +     +   
Sbjct: 483 ---RRTRIT---PDDGDIDIEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQGA 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             KE D ++      T   ++  +  G+ Y +    +   S +  G AI  LI L   + 
Sbjct: 537 GTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPLLPGEK 596

Query: 602 IVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           + T             +   +  G       +E       G   +K+   + +       
Sbjct: 597 VNTVIPVKEGDQEEGYIFFATRSGWVKKTAVTEFQNVRSTGIIAIKLEEGDTLVGARLTR 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDS 714
           G D + +V      L F  D +  M R  +GV+  +   G    V+    +  G   +  
Sbjct: 657 GNDEIILVSSAGYALRFHEDDVRPMGRDTRGVKGITL--GPDEYVVGMDGVVPGADLLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLS 752
           +     +          KRG  G +  +  P R G+ + 
Sbjct: 715 SETGVGKRTPLTEYPTYKRGARGVITIQLLPERHGRLVG 753



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 80/218 (36%), Gaps = 17/218 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALH 556
            + +     +   ++E      +  GW++           S  + A+  +EGD+L  A  
Sbjct: 595 EKVNTVIPVKEGDQEEGYIFFATRSGWVKKTAVTEFQNVRSTGIIAIKLEEGDTLVGARL 654

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKL 614
               D I+L+S+ G  Y L        R  G   + +  I L  ++ +V          L
Sbjct: 655 TRGNDEIILVSSAG--YALRFHE-DDVRPMGRDTRGVKGITLGPDEYVVGMDGVVPGADL 711

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVT-GDHVAVVGENRK 669
           LVVS  G       +E     R  +  + +    +    +  V  VT G+ + +V E   
Sbjct: 712 LVVSETGVGKRTPLTEYPTYKRGARGVITIQLLPERHGRLVGVKAVTEGNDLMLVSEQGV 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           L+   ++++    R  +GV+L +         +   + 
Sbjct: 772 LIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQVVT 809


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/807 (30%), Positives = 403/807 (49%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D+  VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A L L+ NPE SI++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGI-IYGLNGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V EIPYQV K  L+E++AEL+  K++  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PKLCNLRDLVEVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------- 413
           EV+ RR+ F ++    R  +L+GL +A  NIDE I II+N   P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSL 419

Query: 414 ---------------KPVMVSR-------------FSLTENQVDAILNLRLRSLRKLEEY 445
                          +                   + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   ++A    +  +L+  ++    I  E+  VK+ F + T LG RR+        
Sbjct: 480 KIIGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQ-TKLGARRSVI---EHN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
            +    + +I    + V +S+ G+++S         +       A   K+ D ++    A
Sbjct: 536 VQELGTEDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D +L  S  G+ Y L    +  G     G+ I  +  L  N+ I            +
Sbjct: 596 NTHDWMLCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
            S   + + ++ G        E     + G   + +   + +       G H V +  + 
Sbjct: 656 PSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDG 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  D +  M R  +GVR  + + G     +     E  + + +    Y +  +  
Sbjct: 716 GKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSIT 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+G+ +++
Sbjct: 776 EYTRHGRGTKGMIAIQQTERNGRVVAA 802



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 13/194 (6%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + +  G ++              + A+   EGD L  A        ++L S
Sbjct: 654 TFPSDHYIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFS 713

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIV 626
             GKA      ++     +   ++ +  L   Q+++   V  D +  +L  +  G     
Sbjct: 714 DGGKAVRFDEDDVRPMGRNARGVRGMA-LEPGQNVIAMLVAEDESQSVLTATENGYGKRT 772

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ 
Sbjct: 773 SITEYTRHGRGTKGMIAIQQTERNGRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELG 832

Query: 683 RGK-GVRLQSYKDG 695
           R   GV L S  DG
Sbjct: 833 RATQGVTLISLDDG 846


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/790 (33%), Positives = 408/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  IS+E L+ +I GPDFPT  I +  +  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAI-INGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR+   P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LLA+ 
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  ++E ++ +     RRT   E++        + +I +E
Sbjct: 486 AELLFILRSPERLMEVIREELVAIREQYNDA-----RRT---EITHNSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWLKVYQLPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  + +D      +     EG   +      + +        +  R   G +  K 
Sbjct: 718 ATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+GK + +
Sbjct: 777 SERNGKVVGA 786



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EPDERITAILPVREYEEGMNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + +       ++  I+L  +  +V+  V      +
Sbjct: 686 DLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATGVRG-INLQDDDRVVSLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R  K  + +   E+    +  V   + D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDSADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/795 (31%), Positives = 399/795 (50%), Gaps = 66/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE
Sbjct: 130 IAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP  S+++L+E I  PDFPTGGI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLYCLRNPGCSVDELMELIPAPDFPTGGI-IYGMSGVREGYRTGRGRVIMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    
Sbjct: 249 EDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F+++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 FQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRA 427

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   ILN+RL+ L  LE+ +I  E  +
Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++    +  +L   ++    I+ E++ +K  FS      RR     ++         + 
Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRS----DIELNATELDTED 543

Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+        S K       A   KE D +     A+T D +L 
Sbjct: 544 LITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +  G     G+ I  +  L   + I        +     + + +S+
Sbjct: 604 FSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDHYVFMATSR 663

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 664 GTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVR 723

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    +D      +     E  + + +    Y +           RG  G 
Sbjct: 724 PMGRNARGVRGMMLEDTQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGM 783

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK + +
Sbjct: 784 IAIQTSSRNGKVVGA 798



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 12/209 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +       +   E   +  + ++RG ++              + A+   +GD L
Sbjct: 635 PLTEGEKITVVLPVKEFSEDHYV-FMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A        ++L S  GKA      ++     +   ++ ++  +    I      D T
Sbjct: 694 IGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARGVRGMMLEDTQTVIALLVAGDET 753

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L  +  G       +E   + R  K  + +     + + +  V+ +  D + ++   
Sbjct: 754 QSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIMLITTG 813

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
             L+   + +I EM R   GV L +  DG
Sbjct: 814 GVLVRTRVSEIREMGRATQGVTLINVDDG 842


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/738 (49%), Positives = 507/738 (68%), Gaps = 7/738 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T     +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+ 
Sbjct: 5   TPTPEGGRIVEEPMGDALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMRLNP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA
Sbjct: 65  QAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++T  A L+L G+D+DAVDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMA
Sbjct: 125 MRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HNV E+ +A   L++ P+ + E L++ + GPDFPTGG+ VE   S++++Y  GRG
Sbjct: 185 TSIPPHNVGELIDACQLLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYETGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G R+RA W  E++GRG W IVVTEIPYQVQKS+LIE++A+LI  K+ PLL D+RDESAED
Sbjct: 245 GVRLRAAWDTEDLGRGVWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDESAED 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R++L PK+R+++P++LMES+F LSD+ETRFP+NMNVL     P+VM L   L+ +L HR
Sbjct: 305 IRLILEPKSRTVEPEVLMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAFLDHR 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R VL RRS +R+  +++R+ +L+GL I +LN+DE+I I+R E++PK  +++ F L+E Q 
Sbjct: 365 RVVLNRRSQWRIARVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAALIATFGLSELQA 424

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL+ RLR L +LEE  I+ E   L  E   + +L +S  +QW  I  E+  V++    
Sbjct: 425 DFILDTRLRQLARLEEMTIEKEFKELSEELAALQALTSSETKQWKAIGKELEAVRKALVS 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT   +   A      +A I +E ITV++S+RGWIR+ K    D S L FKEG
Sbjct: 485 P-----RRTVIGDAVDASAFVAPEAFIPREAITVILSDRGWIRAAKGKVDDPSELKFKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   + A+TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    +
Sbjct: 540 DKLGFLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVVAH 599

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           +   KLL+ S  G  F+  E++++A  R GK  L       +++  +   DHVAV+GEN 
Sbjct: 600 EPDAKLLIASKAGYGFVAPENDLLAQKRGGKQVLNGEMLAMLRIPSQPQADHVAVIGENI 659

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           K LIF + ++PEM RGKGV+LQ+YK GG++DV  F    G  W D  GR   R+  D   
Sbjct: 660 KTLIFPLAELPEMGRGKGVKLQNYKQGGLADVTVFNAEAGPEWADGGGR--RRNWPDWKD 717

Query: 729 WLGKRGGVGSLVPKGFPR 746
           WLGKR G G   P+G  +
Sbjct: 718 WLGKRAGAGRQGPRGLRK 735


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/737 (52%), Positives = 532/737 (72%), Gaps = 7/737 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L  AL ERYL+YALSTI  R++PD+RDG KPVHRR++ AMS++ L+     KKSA
Sbjct: 10  ILEKPLADALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPTTPPKKSA 69

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD SVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+
Sbjct: 70  RVVGDVIGKFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAMRYTEARL 129

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA+ +L+G+DEDAVDFR TY+ +  EP V P+ FPNLLANG+SGIAVGMAT+IP HNV
Sbjct: 130 TEVAKALLEGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMATNIPPHNV 189

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EIC+A   LI + +  IE L+ ++ GPDFPTGG++VESR+++VE+YR GRG FR+RARW
Sbjct: 190 GEICDALRHLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGAFRLRARW 249

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE++ +G+W IVVTE+PYQVQK+RL+EKIAEL++AK++ LL+D+RDESAEDVR+VL PK
Sbjct: 250 EVEKLAQGTWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDVRLVLVPK 309

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +R++DP++LM S+F  +D+E RF LNMNVL    VP+VM L  +L+ +L HR EVL RRS
Sbjct: 310 SRNVDPEVLMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRHEVLVRRS 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + R+  ID R+E+L G L AYLN+DE+I IIR ED+PK  ++  F+LT+ Q DAILN+RL
Sbjct: 370 NHRLTQIDHRLEVLGGYLAAYLNLDEVIRIIREEDEPKQELIRAFTLTDVQADAILNMRL 429

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R+LRKLEE +I+ E + L  EK  +  LL     +W +IA  + E+K+ F     LG+RR
Sbjct: 430 RNLRKLEEMEIRREHEALTGEKNGLLELLGDEALRWKRIAEGVAEIKKKFGT-GALGKRR 488

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFKEGDSLKIA 554
           T   +           A++E+EP+TV+ S +GWIR+++ H    +   + +K+GD     
Sbjct: 489 TDVADAPAV-IEVPLDALVEREPVTVICSAKGWIRTVRGHLTDAEAEDVKYKDGDERGFV 547

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               TTD++L+ +++GK +T+    L  GRG GE ++L+IDL ++ DIV  F +     L
Sbjct: 548 ERCETTDKLLVFASNGKFFTIGVDKLPRGRGFGEPVRLMIDLGNDVDIVDLFRHQPGRTL 607

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           LVVS  G  F VEE+E++A TR GK  L +   +  ++   V+GD VA++G NRK+L+F 
Sbjct: 608 LVVSEDGRGFRVEEAEVLAQTRSGKQVLNLEDGKSARICQPVSGDTVAIIGNNRKMLVFP 667

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +DQ+P M+RGKGV+LQ YKD  ++DV  F + EGL+W  +  R++N +  DL GW+G R 
Sbjct: 668 LDQVPVMTRGKGVQLQKYKDASVADVKTFTLAEGLSW-KNGERNFNVT--DLTGWMGDRA 724

Query: 735 GVGSLVPKGFPRSGKFL 751
           G G + P GFP++ +F+
Sbjct: 725 GQGKMPPNGFPKNNRFM 741


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/807 (48%), Positives = 523/807 (64%), Gaps = 66/807 (8%)

Query: 9   SNTLVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           S+T   ENV       LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+ 
Sbjct: 2   SDTPDPENVSPDLIEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELR 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+KSA+I G+V+G  HPHGDQ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+
Sbjct: 62  LSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDN 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARMT  AE +L G++EDAVDFR  Y+   +EPVV P+ FPNLLANG+SGIAV
Sbjct: 122 PAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSSGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A L LI  P+   E LL YI GPDFPTGG++VE RESI E+YR 
Sbjct: 182 GMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAETYRT 241

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+R RW  E++GRG W I+VTEIP+QVQKS+LIEK+AE+I  K++P+L D+RDES
Sbjct: 242 GRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVRDES 301

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AED+RIVL P+++++DPD+LM  ++  SD+ETRF LNMNVL  G  P+V  L  +L+ +L
Sbjct: 302 AEDIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 361

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            HRREVL RRS  RM  ID R+E+L+GL++A+L++D +I IIR +D PK  ++       
Sbjct: 362 DHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAALMYEDWGRP 421

Query: 426 NQ---------VDAILNL-------------------------------------RLRSL 439
           +Q          D +  L                                     R + L
Sbjct: 422 HQSTIARATSEADYVSPLAGVDRAGLVLVADPAAGVPAVLGDEPVQAGVPRRYAGREQGL 481

Query: 440 R----------KLEEYQIKSEL------DNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                      +L   +   EL      D L+AE+ +++ LL +G  QW +IA ++REV+
Sbjct: 482 SDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLREVR 541

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             F      G RRTTF E    ++  L +AMIE+EP+T+V S  GWIR+L  H      L
Sbjct: 542 AQFGAKAPGGARRTTFAEAGEVEEVPL-EAMIEREPVTIVCSQMGWIRALTGHIDLNREL 600

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            FK+GD  +   HA TTDR+LL  ++G+ YTL A NL  GRG GE ++L++DL +   IV
Sbjct: 601 KFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEARIV 660

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
             F++    +LLV SS G+ F+V E E++A TR GK  L V +  + ++   V+GDH+AV
Sbjct: 661 DLFIHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVRAPAQARICHPVSGDHLAV 720

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           VGENRK+L+F +DQ+PEM RGKGVRLQ YKDGG+SD   F + EGL+W D AGR+     
Sbjct: 721 VGENRKVLVFPLDQLPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWRDPAGRTRTVGP 780

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           ++L  W G R G G + P+GFPR  +F
Sbjct: 781 DELAEWQGNRAGSGRMAPRGFPRDNRF 807


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 419/762 (54%), Gaps = 30/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +   ++++ ++   ++  +L+YA+S I  RA+PD+RDG KPVHRRI++ M E+G    
Sbjct: 2   SDIQHGHIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+RM+++A  +L+ +++D +D+   Y+  ++EP+V P+++PNLL NG SGIAVGMAT
Sbjct: 122 RYTESRMSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H++ E  +  LA+ DNP I+ E+L+E I GPDFPTGGII+  R  I  +Y  GRG 
Sbjct: 182 NIPPHHLGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIIL-GRSGIRRAYESGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I+V E+PYQV K++LIEKIAEL+  K+I  + ++RDES  + 
Sbjct: 241 LTIRAKVEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++ ++F  + M++ F +NM  L  G+ P+V+ L  +L  +L H++
Sbjct: 301 MRIVIEVRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQ-PKVLSLKEVLYHYLEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR++F ++  + R  IL+GL IA  +IDEII+IIR     ++ +P ++ RF+L+E 
Sbjct: 360 VVIKRRTAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSER 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I++E   LL   +++ ++L    +    I  E+ ++KE +
Sbjct: 420 QAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S        R T       +     + +I +E   + +++ G+I+          K    
Sbjct: 480 SDE------RRTEITAGGLEM-IEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D ++  L   T D IL  ++ GK +      +     +  G  I  L+++
Sbjct: 533 GVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNI 592

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +        +      +  +  G        +       G   + +  ++ +  V
Sbjct: 593 DKGEHVTAMIRVTEFKEDAYFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLISV 652

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
               G   + +   +  L+ F  D I  M R   GVR    ++G    V+  +I E G  
Sbjct: 653 HLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAGVRGIKLREG--DFVVGMEILEPGQE 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +      Y +   +    L  RGG+G    +   ++GK  +
Sbjct: 711 ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCA 752



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A ++    +++   +  +  G  +              L A+  +E D L  
Sbjct: 592 IDKGEHVTAMIRVTEFKEDAYFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 T  I++ ++DG        ++ S       ++  I L     +V   + +   +
Sbjct: 652 VHLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAGVRG-IKLREGDFVVGMEILEPGQE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRK 669
           +LVV+  G      ESE    +R G     +       KM  V  V G + + ++  N  
Sbjct: 711 ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAVDGSEDIMLITINGM 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           L+   ++ I  + R  +GVRL    +G     + 
Sbjct: 771 LIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVA 804


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/769 (34%), Positives = 439/769 (57%), Gaps = 37/769 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+  +N      +    +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M+E+
Sbjct: 2   NMEENN-----RIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNEL 56

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD
Sbjct: 57  NLTPDKPYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGD 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA+M++++  +L+ +D++ VDF   ++E   EP V P++FPNLL NG++GIA
Sbjct: 117 SPAAMRYTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMATSIP HN+ E  +A + LIDNP+  +++L++YI GPDFPTG II+  ++SI E+YR
Sbjct: 177 VGMATSIPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIM-GKDSIAEAYR 235

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VR+R  +EE+ +G   IVVTEIPYQV K++L+E+IAEL+  KRI  + D+RDE
Sbjct: 236 TGRGKVKVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDE 295

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R ++ ++++ +++  S +E  F + M  L  G VP+++ L  IL  +
Sbjct: 296 SNRNGMRIVIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNG-VPRILNLKQILHYY 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + H+++V+ RR+ F +     R  IL+GL IA   IDE+I++IR+       K  ++ +F
Sbjct: 355 VEHQKDVVTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RL+ L  LE  ++++E + L+ + E ++S+L   +     I  EI E
Sbjct: 415 KLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILE 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +K+ +S +     RRT   E+  A+     + +I+ E IT+ +++ G+I+          
Sbjct: 475 IKKKYSDA-----RRT---EIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQ 526

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591
           +     +SAL  +E D +K  +   T +R+L  +  G+ + L A  +  G+    G AI 
Sbjct: 527 RRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIV 586

Query: 592 LLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            L+ L  N+ I T        D    LL+ + KG     + SE     + G   + +  +
Sbjct: 587 NLLQLGPNEKIATLIEVDGRADDDSYLLLATKKGIVKKTKRSEFKNINKSGLIAIGLRDD 646

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +++  V    G+  V +V  N   + F    I  M R   GV+  +  +G    V+   +
Sbjct: 647 DELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPMGRTAMGVKGITLSEG--DKVVSMSL 704

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             EG   +  +   Y +  +        R G G        ++G+ + +
Sbjct: 705 SDEGEDLLVVSQNGYGKRTDINEYRSQIRAGKGIKTYNMSEKTGEIVGA 753



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +           + +   ++ + +G ++  K           L A+  ++ D L     
Sbjct: 595 EKIATLIEVDGRADDDSYLLLATKKGIVKKTKRSEFKNINKSGLIAIGLRDDDELIDVKT 654

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +    +LL++++G +      ++         ++  I L+    +V+  + D    LLV
Sbjct: 655 TNGEKDVLLVTSNGMSIRFDEKDIRPMGRTAMGVKG-ITLSEGDKVVSMSLSDEGEDLLV 713

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLI 672
           VS  G     + +E  +  R GK     +  EK   +V  T     D + ++  +  L+ 
Sbjct: 714 VSQNGYGKRTDINEYRSQIRAGKGIKTYNMSEKTGEIVGATMVNNEDELMLINSDGVLIR 773

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             +D I    R   GV+L    D      I     E
Sbjct: 774 LRVDDISVFGRITSGVKLMKTDDEVNVVSIAKIDTE 809


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 412/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALI+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+EI+        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVREIYGDE-----RRT---EITAAVHDIDMEELIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        + +   + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  ++ K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKSGKVVRFNEDKVRAMGRTASGVRGM-KLPEDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    D 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTSDD 829


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 414/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NID+II +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E++ V++ +  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  ++ K++ F+ DQ+  M R
Sbjct: 656 KTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +G     +     +G   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLMEGDQVVSLIVPKTDGD-ILTVTENGYGKRTVLAEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 775 VSERNGRVVGA 785



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L       +    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EDNERITAILPVTEFSDDKFIFMATGDGTVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSEIMLFSKSGKVVRFNEDQVRAMGRTASGVRGM-KLMEGDQVVSLIVPKTDGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E  A +R   G   +KVS      +  V    GD   ++     L
Sbjct: 744 LTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTSED 829


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/792 (33%), Positives = 412/792 (52%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   KEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALI+NP  +IE+L+EYI GPDFPT  I +  R+ I E+YR GRG   +RA
Sbjct: 186 NLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAI-ISGRKGIEEAYRTGRGKIYLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+V E+PYQV K++LIEKIAEL+  KRI  +  +RDES +D   ++ 
Sbjct: 245 RAEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + ++T F +NM  L   + P+V  L   L+ ++ HRREV+ R
Sbjct: 305 EVKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQ-PKVFNLKDTLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  +L+GL IA  NID +I +I+    P                     
Sbjct: 364 RTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I SE  +LL  
Sbjct: 424 ERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  +++ F        RRT   E++ A      + +IE+
Sbjct: 484 IAELLRILGSSERLMEVIREELEAIRDEFGD-----DRRT---EITAASHDIDLEDLIER 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          K      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ L   + I        +     + + ++ G   
Sbjct: 596 GRLYWLKVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFVDGKYVFMATTNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             E ++       G   + ++   ++  V    GD  + +  +  K++ F  +Q+  M R
Sbjct: 656 KTELTQYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GVR    ++     V+   + +G    + +    Y +  +        R   G +  
Sbjct: 716 TATGVRGIRLEED--QKVVSLIVPQGEGAVLTATENGYGKRTDIAEYPAKSRATKGVVSI 773

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 774 KVSERNGLVVGA 785



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L            + +  G ++        +  +  + A++  +G+ L   
Sbjct: 625 EEGERITAILPIKEFVDGKYVFMATTNGTVKKTELTQYSRPRANGIIAVNLNDGNELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        +         ++  I L  +Q +V+  V      +
Sbjct: 685 DLTDGDSEIMLFSDAGKVVRFHEEQVRPMGRTATGVRG-IRLEEDQKVVSLIVPQGEGAV 743

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKL 670
           L  +  G     + +E  A +R  KG   +KVS    + +  V     D + ++ +   L
Sbjct: 744 LTATENGYGKRTDIAEYPAKSRATKGVVSIKVSERNGLVVGAVQVNEDDEIMLISDQGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           +     ++  + R  +GV L   + G   +V+  
Sbjct: 804 VRTRATEVSTVGRNTQGVTLI--RTGENENVVGL 835


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/752 (33%), Positives = 407/752 (54%), Gaps = 29/752 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V +   + E +++YA+S I  RA+PD+RDG KPVHRRI++AM +MGL     F+KSA +
Sbjct: 10  KVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFRKSANV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+   HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE+R ++
Sbjct: 70  VGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTESRFSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L+ +D++ VDF   Y+    EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E
Sbjct: 130 LALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  +A+IDNP+I+I+ L++ I GPDFPT G I+     I  +Y  GRG   +RA+  +
Sbjct: 190 VVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEIL-GYSGIRRAYETGRGSIIMRAKTQI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE G+G   I+VTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES      ++    R
Sbjct: 249 EEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRIVMELRR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + P +++ ++F  + M++ F +NM  L     P+V+ L  +L  +L H+R ++ RR+ +
Sbjct: 309 DVIPKVVLNNLFKHTQMQSTFGVNMLALVD-SRPRVLNLRDMLYYYLEHQRVIIRRRTEY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  +IDEII++IR+    ++ +  ++  +SL+  Q  AIL++R
Sbjct: 368 DLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I++E   L+ +  ++ ++L    + +  I  E+ E+KE F        R
Sbjct: 428 LQRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEKFGDE-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   E++  +       +I +E + + +++ G+I+          K     +  L  K+
Sbjct: 483 RT---EITFDENHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTKD 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++     ++ D I+  ++ GK Y L    +   S    G  I  LI +   + +   
Sbjct: 540 DDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVSAV 599

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                +D    L   + KG              + G   + +  ++++  V    G    
Sbjct: 600 IPVKEFDQEHYLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQQQI 659

Query: 663 VVGENRKL-LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           ++G ++ + + F+   +  M R   GV+  +  D          I      +      Y 
Sbjct: 660 IMGTHKGMSVRFNEGDVRTMGRNATGVKGITLDDDDDVI-DMDVIKPNAEVLIVTANGYG 718

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        +  RGG G        RSG  + 
Sbjct: 719 KRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVG 750



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A +     ++E      + +G I+     S        L A++ +E D L
Sbjct: 588 IQIEKGERVSAVIPVKEFDQEHYLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDEL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                     +I++ +  G +     G++ +   +   ++  I L+ + D++   V    
Sbjct: 648 IGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTMGRNATGVKG-ITLDDDDDVIDMDVIKPN 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGEN 667
            ++L+V++ G        E    +R GK     +  ++   VV +      + + ++  +
Sbjct: 707 AEVLIVTANGYGKRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVGLKVVEPEEDLMIITTS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++   +  I  M R  +GV+L    +      + 
Sbjct: 767 GIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVA 802


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 419/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I++ +I+I++L+EYI GPDFPT  + +  R+ IV++Y+ GRG   +RA
Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAM-ISGRKGIVDAYKTGRGKVYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  IL+GL +A  NIDEII ++R    P                     
Sbjct: 364 RTIYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                +++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+  VKE FS +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILSSSERLMEVIREELELVKEQFSDA-----RRT---EITAASHDIDMEDLITQ 535

Query: 518 EPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      +A   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYEADKFVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  E+ +  V    G + + +  +  K++ FS +Q+  M R
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGIKLAESDKVVSLIVPHNEGD-VLTVTENGYGKRTELAEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGSVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 17/228 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E +    + +  G ++        +  S  + A++ ++ D+L   
Sbjct: 625 EENERITAILPVREYEADKFVFMATADGTVKKTPLTDFSRPRSAGIIAVNLRDEDTLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 + I+L S  GK        +   RG G     +  I L  +  +V+  V  +  
Sbjct: 685 DITDGQNDIMLFSKAGKVVRFSEEQV---RGMGRTAAGVRGIKLAESDKVVSLIVPHNEG 741

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            +L V+  G     E +E  A +R   G   +KVS      +  V    GD   ++    
Sbjct: 742 DVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITNGG 801

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDS 714
            L+   + ++  + R  +GV L    +D  +  +      E     D+
Sbjct: 802 TLVRTRVAEVSRVGRNTQGVTLIRTAEDEQVVGLQRIDEPEEELIEDA 849


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/795 (31%), Positives = 409/795 (51%), Gaps = 70/795 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+++P+ SI++L+E +  PDFPT GI V   + + + YR GRG   +RA+   
Sbjct: 190 VVDACQHLLNHPQASIDELIEIVPAPDFPTAGI-VYGVQGVRDGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQ-PKLLNLRELLECFLSHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 YELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVRDMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 QGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    IA E+  +K  F         R +  E++  +  T  + 
Sbjct: 488 VMAQIADLLDILAKPERIRTIIADELVAIKAEFGDP------RRSQIELNATELGT--ED 539

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+I+S         K       A+  K+ D ++    A+T D IL 
Sbjct: 540 LITPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L   + I        + +   + + +S 
Sbjct: 600 FSNRGRVYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFLATSL 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G              RKG   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR    ++G     +     E  + + +    Y +           RG  G 
Sbjct: 720 PMGREARGVRGMQLEEGQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGM 779

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G+ +++
Sbjct: 780 IAIQTSERNGRVVAA 794



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 650 DKFVFLATSLGTVKKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGK 709

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V    +  +L  +  G       +E
Sbjct: 710 AVRFDENDVRPMGREARGVRGM-QLEEGQQVIALLVAGGESQSVLTATENGYGKRTPIAE 768

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 769 YTRHGRGTKGMIAIQTSERNGRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQ 828

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 829 GVTLISLDEG 838


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 417/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   FDEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +IDNP+I+I +L+  I GPDFPT GII+     I  +Y  GRG   
Sbjct: 182 PPHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIII-GTSGIRSAYETGRGKIL 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EEV +G   I++TEIPYQV KS+LIE +A+L+  K+I  + DIRDES  D   
Sbjct: 241 VRAKAEIEEV-KGRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVIELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNE-PKVLNLKQMLVYYLQFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR+    +      +S FSL+E Q 
Sbjct: 359 VTRRTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L + +     I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKY-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  ++S  D     + +IE++ + + +++ G+I+          +     +
Sbjct: 477 ----GDERKTEIQISNDD--INIEDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A+  KE D ++      T + IL  +  GK Y L    +        G  +  LI L  
Sbjct: 531 QAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQG 590

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I     +   D     ++ +  G     + S+  +  + G   + +  E+++  V  
Sbjct: 591 DEQIQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWI 712
            TG+  + +  +N   + FS D +    R   GVR  + + G I+  +   I +     +
Sbjct: 651 TTGESEILIFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIA--VAMDIVDKSQDVL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        + +RGG G +  K   ++G  + +
Sbjct: 709 VISENGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGLIVGA 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +     +A +    ++K+   ++ +  G I+  K           L+A++ K+ D L
Sbjct: 586 IPLQGDEQIQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ + +G A      ++     +   ++  I L      V   + D +
Sbjct: 646 IGVRMTTGESEILIFTKNGYAIRFSEDDVRPTGRNTTGVRA-ITLRTGDIAVAMDIVDKS 704

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +LV+S  G       SE   + R GK  +     EK  L+V        D + ++  +
Sbjct: 705 QDVLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGLIVGARVVKDEDEMMLINSS 764

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              +  ++ +I   +R   GV L    +      I 
Sbjct: 765 NVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIA 800



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   +   M   E   ++ +  G+        +R    ++  + A+  + GD        
Sbjct: 642 EDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIAVAMDIV 701

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
             +  +L++S +G     P       R  G+ I           IV A V     +++++
Sbjct: 702 DKSQDVLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTEKTGLIVGARVVKDEDEMMLI 761

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           +S   A  +  SEI    R   G T ++   E+++  + K+ 
Sbjct: 762 NSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKIN 803


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/755 (32%), Positives = 409/755 (54%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   L + +L YA+S I  RAIPD+RDG KPVHRRI++ M  +G+     +KKS
Sbjct: 6   KILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG+V+ K HPHGD +VYD+LVRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 66  AWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ + ++ VDF D Y+  + EP+V PS+FPN+L NG++GIAVGMAT+IP HN
Sbjct: 126 LSKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LID+P+  +E+L+++I GPDFPTG +I+  RE I+++YR GRG   +RA 
Sbjct: 186 LGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALIL-GREGILDAYRTGRGSIILRAA 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K+RL+EKIAEL+  KRI  + D+RDES      ++  
Sbjct: 245 TQIEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++ ++F  + ++T + + M  L  G  P+V+ L  +L+ +L H+ +V+ RR
Sbjct: 305 LRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVDG-RPRVLNLGEMLRYYLRHQEDVIRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  +ID +I +IR     ++ +  ++ +F L+E Q  AIL
Sbjct: 364 TTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQFHLSEEQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   L+ + +++ ++L   K+    I  E+ ++K  +      
Sbjct: 424 DMRLQRLTGLERQKIDEEYAELVEKIKELRAILADEKKILGVIREELLDIKAKYGDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT        +     + +I  E + V +S+ G+I+          +     ++A+ 
Sbjct: 481 --RRTRIT---AGEGEIEDEDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMG 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++      +   +L  +  GK Y L A  +        G  I  L++++  + I
Sbjct: 536 TKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                    D    L++ + +G        E     R G   + +   +++  V    G 
Sbjct: 596 SAVVPIRSTDGGQYLIMATREGTIKKTPLDEFENIRRGGLVAISLRENDELIAVRMTDGS 655

Query: 660 HVAVV-GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
              ++   +   + F    +  M RG  GV+    + G +   +     +G   + +  R
Sbjct: 656 RELILGTRSGMAIRFPETDVRSMGRGAAGVKAVDLQGGDVVIDMDVVDPDGDVLVVTN-R 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +           RGG G        R+G  +S
Sbjct: 715 GFGKRTPITEYRHQSRGGKGIRTLHVTARTGSVVS 749



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 12/198 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ +  G I+              L A+  +E D L        +  ++L +  G A   
Sbjct: 611 IMATREGTIKKTPLDEFENIRRGGLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRF 670

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
           P  ++ S  G G A    +DL     ++   V D    +LVV+++G       +E    +
Sbjct: 671 PETDVRSM-GRGAAGVKAVDLQGGDVVIDMDVVDPDGDVLVVTNRGFGKRTPITEYRHQS 729

Query: 636 RKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK    +    +   VV +      + V V+      +   +D+I    R  +GV+L 
Sbjct: 730 RGGKGIRTLHVTARTGSVVSLKMVRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLI 789

Query: 691 SYKDGGISDVICFKICEG 708
           + K+      +   +C G
Sbjct: 790 TLKEDEEVSTVAKVVCAG 807



 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   +A  +RE  E+ +     G R       S       +                  
Sbjct: 631 RRGGLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETD---------------- 674

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  + A+  + GD +           +L+++  G     P          G+ 
Sbjct: 675 VRSMGRGAAGVKAVDLQGGDVVIDMDVVDPDGDVLVVTNRGFGKRTPITEYRHQSRGGKG 734

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+ L        +V+  +  +   ++V+++ G A  +   EI    R   G   + +  +
Sbjct: 735 IRTLHVTARTGSVVSLKMVRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLKED 794

Query: 648 EKMKLVVKV 656
           E++  V KV
Sbjct: 795 EEVSTVAKV 803


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/750 (49%), Positives = 516/750 (68%), Gaps = 18/750 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
                  AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  M LD    +KKSAR
Sbjct: 28  IDTPFDSALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRAMRLDPSQGYKKSAR 87

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T
Sbjct: 88  VVGDVIGKFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNIDGDNAAAYRYTEARLT 147

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +VA  ++QG+DE  VDFR TYN ED EP + P  FPNLLANG SGIAVGMAT+IP HN  
Sbjct: 148 RVAVDLMQGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGASGIAVGMATNIPPHNAA 207

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AAL LIDNP+  +  LL+++ GPDFPTGGI+ E+ E+I ++Y  GRG FRVRAR+ 
Sbjct: 208 EVIDAALLLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQAYESGRGSFRVRARFS 267

Query: 258 -------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                        +E++  G+W +V++EIPY V K +LIE++A+LI  +++P+LED+RDE
Sbjct: 268 IGKDADGKWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQLIADRKLPILEDVRDE 327

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SAED+RIVL PK+R++D ++L +S++ L+D+E+RF LN+NVL   R P+VM L  +L EW
Sbjct: 328 SAEDLRIVLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDATRTPKVMGLKQLLTEW 387

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L H+  VL RR+  R+  ID R+E++ G +IA+LN+D II IIR ED+PKPVM++ F LT
Sbjct: 388 LQHQIIVLVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIRTEDEPKPVMIAEFELT 447

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILN+RLRSLRKLEE ++K E  +L AE+E++  L+ S  +Q  ++  ++  ++ 
Sbjct: 448 DRQAEAILNMRLRSLRKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRG 507

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--A 542
           ++   T LG RRTT  E +   +     AMIEKEP+TV++S RGWIR+ + H        
Sbjct: 508 VYGLDTSLGARRTTIAEAAPT-REIPLDAMIEKEPVTVILSKRGWIRAQRGHVAPDQWGE 566

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FKEGD L  A HA TTD++L+ ++DG+ +T+ A  L  GRG GE ++L++D++ +  I
Sbjct: 567 FKFKEGDELLFAAHAQTTDKLLIAASDGRFFTVGADKLPGGRGFGEPLRLMVDIDPDARI 626

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660
           V      +  +LL+ S+ G+ FIV   ++ A TRKG+  + +     + +   +    D 
Sbjct: 627 VAMVPASAGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDS 686

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVG+NRKL++F + ++P M RG+GV LQ Y+DGG+SD + F + EGL+W         
Sbjct: 687 VAVVGDNRKLVVFPLAEVPVMGRGQGVMLQRYRDGGLSDAVSFVLAEGLSWAMGGDSGRT 746

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+E DL  W   RG  G + P GFPR+ +F
Sbjct: 747 RTETDLAPWRVARGAAGRMPPTGFPRNNRF 776


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/741 (50%), Positives = 527/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVMFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/741 (50%), Positives = 528/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI+ P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALI++  I+I+ L+E+I GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAI-INGRRGIDEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKEILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T+ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/791 (33%), Positives = 409/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDE+I +I+N   P                     
Sbjct: 364 RTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ +  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   +    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R
Sbjct: 656 KTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++    +         L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSPEKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/741 (50%), Positives = 533/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +++D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 MRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  + A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+ S 
Sbjct: 541 KFIIEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVHKSD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSIGKGFLVNSNEVMAQTKTGKQIMNVPDGHTCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLSW---NNNGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GF ++ +F S
Sbjct: 717 KRGSTGKLPPMGFHKNNRFSS 737


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 410/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++ +I+IE L+E+I GPDFPTG I +  R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAI-INGRRGIDEAYRTGRGKVYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +E
Sbjct: 486 GELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +   + K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L STDGK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 409/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELETVRDAFGD-----VRRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 19/246 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSPEKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFNEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRS 722
           +   + ++ ++ R  +GV L    +         I +V    + EG    D+   +   S
Sbjct: 804 VRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVDLPEGEDAADTENTAEVTS 863

Query: 723 ENDLLG 728
           EN    
Sbjct: 864 ENPETP 869


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/755 (51%), Positives = 526/755 (69%), Gaps = 11/755 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  ++     +  +    +  AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MSDEFKTDDQ---DNGIIEEPMSDALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L+   AFKKSAR+VG+VIGK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGN
Sbjct: 58  MRLLKLNPELAFKKSARVVGDVIGKYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTE+R+T  A+L+L+G+DE+AVDF++TY+  D EPVV  S FPNLL NG+
Sbjct: 118 IDGDSAAAMRYTESRLTPAAQLLLEGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E  +A + LI+N   +   L++ + GPDFPTGG IVE  +SI+
Sbjct: 178 SGIAVGMATSIPPHNAAETIDACIHLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSIL 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRGGFR+R +W  E++ RG W IVVTEIPYQVQKS+LIE++AELI  K+ PLL+D
Sbjct: 238 KAYETGRGGFRMRCKWEKEDLPRGLWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DESAED+R+VL P+N+ +DPD+LM S++ +SD+E+RF LNMNVL    VP+VM L  +
Sbjct: 298 VMDESAEDIRVVLVPRNKLVDPDVLMASLYKMSDLESRFSLNMNVL-DHNVPRVMGLKQV 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +LAHR+EV+ RR+  R+  I+ R+ IL+G L AYLNIDE+I IIR ED PK  ++  
Sbjct: 357 LQCYLAHRQEVIVRRAQHRLDKIEARLHILEGYLKAYLNIDEVIRIIRYEDHPKEELMKA 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q DAILN+RLR+LRKLEE +I+ E D L  E++K+  L+ S  +QW ++  +++
Sbjct: 417 FKLSEIQTDAILNMRLRALRKLEEIEIQGEHDKLTQERDKLVQLIGSEARQWTEVKRQLK 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
             +E+F   +DLGRRR+ F      D     +AMI KEPITV++S  GWIR+LK H+  +
Sbjct: 477 IAREVFDPESDLGRRRSKFGVAVEIDADAALEAMIPKEPITVILSKMGWIRALKGHNQAM 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L FK+GD L   L   TTD+++LL++ GKA+T  A  L SGRGHGE I+L IDL  ++
Sbjct: 537 DKLKFKDGDELAFTLECQTTDKVVLLASGGKAFTFAADKLPSGRGHGEPIRLSIDLPEDE 596

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +I+      +  + +V S+ G  F+V E E+++  R GK               +V GD 
Sbjct: 597 EIIATITPKTGYRRVVASTAGYGFVVNEEELVSQKRGGKVIQNPPDGATFAFCPRVEGDM 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-----ISDVICFKICEGLTWIDSA 715
           VAV+G+N+K+L F ++++PEM+RGKGV+LQ+YK  G     + D+  F   +G  W D+ 
Sbjct: 657 VAVIGDNKKILFFPLEELPEMARGKGVKLQNYKQSGLINEQLMDICTFDSEDGFFWKDTG 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GR  N S N+   WLGKR   G L PKGF R+GKF
Sbjct: 717 GR--NISLNEWRDWLGKRAAAGKLAPKGFNRTGKF 749


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/756 (34%), Positives = 406/756 (53%), Gaps = 31/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AMSE G+      KKSA
Sbjct: 52  LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  AA RYTEAR+
Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A   +IDNPE++ E+L+  + GPDFPTGGII+   + I ++Y  GRG   VRA+ 
Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIM-GTQGIKDAYETGRGSITVRAKV 290

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE+V  G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES      ++   
Sbjct: 291 HVEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 350

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ +++  + +++ F +    L  G VP+ + L  IL+ ++ H+ +V+ RR+
Sbjct: 351 KRDAVPQVVLNNLYKKTQLQSNFGIIDLALVDG-VPRTLSLREILRHYIDHQIDVVRRRT 409

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F +    +RV IL+GLL A  NIDEI+ IIR+     + K  M  RF L E Q +AIL 
Sbjct: 410 EFDLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNERFGLDEIQGEAILQ 469

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  L    +  E+  L  +    + LL   ++    IA E+RE+   ++      
Sbjct: 470 MRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYADK---- 525

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E    +     + +I +E + V +++ G+++          K     +  +  
Sbjct: 526 -RRTQISEQDIQNLDV--EDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSL 582

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHNQD- 601
           KE D ++    A T D +L  +  GK Y L    L   S    G AI  +I+ L   +  
Sbjct: 583 KENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGEKV 642

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
             ++T   +     L+  + +G       SE     + G   + +   +++  V +V  G
Sbjct: 643 KAVITTRDFPEDNYLMFATKQGMVKKTAMSEYDRTRKDGLIAINLKDGDELVNVRRVHPG 702

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG-LTWIDSAG 716
           D V +   + K ++F   +   M RG  GVR  + K  G + ++  +I  G         
Sbjct: 703 DKVVLCSSDGKAILFDEAEARSMGRGTSGVRGITLK--GNATMLGMEITNGNGDLFVITE 760

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +        + KRGG G        + G  ++
Sbjct: 761 KGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVA 796



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 17/218 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
           T  E  +       +   E   +    + +G ++       D +      A++ K+GD L
Sbjct: 635 TLAEGEKVKAVITTRDFPEDNYLMFA-TKQGMVKKTAMSEYDRTRKDGLIAINLKDGDEL 693

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
                 H  D+++L S+DGKA           R  G     +  I L  N  ++   + +
Sbjct: 694 VNVRRVHPGDKVVLCSSDGKAILFDEAE---ARSMGRGTSGVRGITLKGNATMLGMEITN 750

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVG 665
               L V++ KG       SE   + R G+    ++  EK   +     V   H + ++ 
Sbjct: 751 GNGDLFVITEKGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVACRVVGPQHEIMIMS 810

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           E   ++      I ++ R  +GV++ +     +   + 
Sbjct: 811 EEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVA 848


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/743 (52%), Positives = 526/743 (70%), Gaps = 7/743 (0%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N    +   V+   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+I+AM ++ LD
Sbjct: 2   NMPDDMIGRVEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRLD 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A FKK ARIVG+VIGK HPHGD + Y++LVRLAQ F  RYPL+ GQGNFGNIDGD AA
Sbjct: 62  PDAGFKKCARIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           AYRYTEAR+T+VA  +L+G+D+DAVD R TYN E+ EP V P+ FPNLLANG +GIAVGM
Sbjct: 122 AYRYTEARLTEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ATSIP HN  ++C+AALALI+NP+     LL+++ GPDFPTGGI+VE R S++++Y  GR
Sbjct: 182 ATSIPPHNAGQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           GGFRVRARW  E+   GSW I++TEIPYQVQK+RLIE++A L+  K++PLL DIRDES E
Sbjct: 242 GGFRVRARWHKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDESTE 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            VRIVL PK+R++ PD+LME++F  + +E+RFPLNMNVL   R P+VM +  +L++WL H
Sbjct: 302 TVRIVLEPKSRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWLDH 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R EVL RRS+ R+ +IDRR+EIL G L+ YLN+DE+I I+R ED+PK  +++ FSLT+ Q
Sbjct: 362 RHEVLIRRSTHRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAALIAAFSLTDMQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +++LN+RLRSLRKLEE +I+ E   L  E++ +D+LL S   +W +IA E+  V++ F 
Sbjct: 422 AESVLNMRLRSLRKLEEMEIRREHAKLSKERKDLDALLKSEPLRWKRIAHEVAAVRDQFG 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            S  LG RRT              +A +E+EPITV++S +GW+R+LK H  D   L FKE
Sbjct: 482 -SGKLGDRRTDIAGPPAT-VEVAAEAFVEREPITVILSEKGWMRALKGHIADTVELRFKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD+L+ AL   TTDR+ LL+T+GKAYTL A +L  GRG G+ ++LL    +  D++   V
Sbjct: 540 GDALRFALPCETTDRLCLLATNGKAYTLKAADLPRGRGDGQPVRLLAGFGNEDDVIALLV 599

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
                + L+VSS G  F++  ++++A  R G+  L V   E+    V   GDHVAV+ E+
Sbjct: 600 PKEEARYLLVSSAGRGFVIRGADLLAEKRTGRQALNVKPGEEAAFCVPAEGDHVAVISES 659

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RKLL+F ++Q+PEM+RG GV L   K G   D++   +  GL+W+    +   R E DL 
Sbjct: 660 RKLLVFPLEQVPEMARGAGVILN--KGGAPRDIMVLTLAHGLSWMSGEKQ---RVERDLS 714

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            WLG RG  G + P GFP+SG+F
Sbjct: 715 YWLGARGQSGKVPPNGFPKSGRF 737


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/791 (30%), Positives = 405/791 (51%), Gaps = 67/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP  +IE+L+E +  PDFPT GI +     + ++YR GRG   +RAR   
Sbjct: 190 VLDACLHLLRNPGATIEELMERVPAPDFPTAGI-IYGTSGVRDAYRTGRGRVVMRARCHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L+HRRE++ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  +L+GL +A  N+D +I +I+    P PV   R                 
Sbjct: 368 FDLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSR 426

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL+ L  LE+ +I  E  +++ +
Sbjct: 427 VEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVMEQ 486

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  ++  F  +      R +  EV+  D     + +I  
Sbjct: 487 IADLLDILAKPERMTEIITTEMSALRAEFGDA------RRSHIEVNAYD--IDVEDLITP 538

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V IS+ G+++S         +       A   KE D ++    A+T D +L  S  
Sbjct: 539 QDLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNR 598

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +        GRG  G+ +  L  L   + I T      +D    + + +++G   
Sbjct: 599 GRVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGTVK 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               +  +     G   + +  ++ +       G H V +  +  K + F    +  M R
Sbjct: 659 KTPLTAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGR 718

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +       +     E  + + +    Y +  +        RG  G +  +
Sbjct: 719 EARGVRGMQLEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 778

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 779 TSERNGKVVAA 789



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 515 IEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +++    + + RG ++       +   +  + A+   E D L  A        ++L S 
Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSD 701

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ +  L  +Q ++   V  D T  +L  +  G      
Sbjct: 702 AGKAVRFDEADVRPMGREARGVRGM-QLEADQSVIALLVAEDETQSVLTATENGYGKRTS 760

Query: 628 ESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+    +   +  T D + ++ +   L+   +++I EM R
Sbjct: 761 ITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGR 820

Query: 684 GK-GVRLQSYK 693
              GV L +  
Sbjct: 821 ATQGVTLIALD 831


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 403/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+++I GPDFPT  I +  R  I E+YR GRG   +RA+ 
Sbjct: 188 NEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ M+  F +NM  L     P+++ L   L+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-HQGQPKLLTLKDCLQAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S  +    I  E+  V++ F  +     RRT   E++        + +I +E
Sbjct: 486 AALIFILESPDRLMEVIREELIAVRDQFGDA-----RRT---EITENTADINIEDLISQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              ++       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGEDRVVSLIIPRGEGDILTVTENGYGKRTGVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VSERNGNVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN    +V+  +      +
Sbjct: 686 DLTDGSNEVMLFSAAGKVVRFPESQVRSMGRTATGVRG-INLNGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS     +   V+V   D + ++ +   L
Sbjct: 745 LTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERNGNVVGAVQVDACDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRS 718
           +   + ++  + R  +GV L    +D  +  +      E    +      
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEVLDGEEG 854


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 407/755 (53%), Gaps = 32/755 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V +   ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM ++G  F   FKKSAR+
Sbjct: 10  SVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQP+  R+ L+ GQGNFG++DGDS AA RYTEARM++
Sbjct: 70  VGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D+D VDF   Y+E   EP V P+++PNLL NG+ GIAVGMAT+IP HN+ E
Sbjct: 130 LAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLAE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
              A +AL++NPEI  ++L++ + GPDFPTGG  +  R  I  ++  GRG   +RAR  V
Sbjct: 190 TINATIALVNNPEIDDDELMQIMPGPDFPTGG-FIYGRSGIRSAFMTGRGSVTMRARAIV 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   R     +++TE+PYQV K+ LIE IA  +  K++  + D+RDES  D   +     
Sbjct: 249 EVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           ++  P++++ +++  + ++  F  N+  L  G+ P++  +  +L  +L HRR+V+ RR  
Sbjct: 309 KNEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQ-PKLCGVRELLLHFLDHRRQVVTRRCL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +   + R  IL+GLLIA   IDE+I +IR      + K  ++  F L++ Q  AIL++
Sbjct: 368 FDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILDM 427

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +IK+E + +      + ++L   K   N I  E+  V++ ++       
Sbjct: 428 RLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADP----- 482

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RR+   E+         + +I +E + V ISN G+I+          +      +A+  K
Sbjct: 483 RRS---EIMDETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTK 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI-- 602
           + D +   + A T D +L  S  G+ +      +        G+A+  L+ +  ++ I  
Sbjct: 540 DEDFVAQLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKALVNLLPVEKDERISA 599

Query: 603 -VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
            +    +D    +++ +  G       SE       G   +K+  ++ +  V+   GD  
Sbjct: 600 TLAIREFDENRFIIMATKNGVVKKTRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDED 659

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRS 718
           V +     K + F+   +  M R  +GV        G  +VI    + +  T +  +   
Sbjct: 660 VMLATSGGKAIRFAESDVRPMGRSTRGVTGMRLP--GDCNVISMTLVSDEATLLAVSENG 717

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +     + KRGG G    K   R+G  +++
Sbjct: 718 FGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAA 752



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 86/228 (37%), Gaps = 14/228 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      ATL     ++    ++ +  G ++  +           + A+   + D L  
Sbjct: 591 VEKDERISATLAIREFDENRFIIMATKNGVVKKTRLSEYQNIRANGIIAIKLDDDDGLIS 650

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            L ++  + ++L ++ GKA      ++         +  +  L  + ++++  +      
Sbjct: 651 VLVSNGDEDVMLATSGGKAIRFAESDVRPMGRSTRGVTGM-RLPGDCNVISMTLVSDEAT 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRK 669
           LL VS  G       SE     R G+    +     + + +  ++    D V ++ ++ +
Sbjct: 710 LLAVSENGFGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAALLVHDDDQVMMMTDSGR 769

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKICEGLTWIDS 714
           L+   ++ +  + R  +GV+L + K+G   I  V   +  +     D 
Sbjct: 770 LVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAEQADDELATDE 817


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/792 (33%), Positives = 407/792 (51%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDS AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VDF   Y+E +SEP V P++ P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA+ID P++++  L+ +I GPDFPT  I +     I  +Y  GRG   +RA
Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAI-INGASGIYNAYTTGRGKIYLRA 244

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   E++G      I+ TE+PYQV K+RL+EKIAEL+   ++  +  +RDES +D   ++
Sbjct: 245 RCHFEDIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ +++  +  +T F +NM  L  GR    M L  I+  ++ HRRE++ 
Sbjct: 305 IELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHC-MNLREIISAFINHRREIVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL IA  NIDE+IA+I+    P                    
Sbjct: 364 RRTIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAAL 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL LRL  L  LE+ +I +E   LL 
Sbjct: 424 LDRADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + ++   +L S  +    I  E+  +KE +S       RRT   E+ +       + +I 
Sbjct: 484 QIDEYLFILGSDVRLMEIIREELVAIKEQYSDE-----RRT---EILQNHSDLSDEDLIT 535

Query: 517 KEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++S         +      SA   KE D +   + A+T D IL  S+
Sbjct: 536 EEDMVVTMSHEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G+    L+ L   + I        +  +  + + ++ G  
Sbjct: 596 RGKVYWLKVYQLPVASRAARGKPFVNLLPLEEGEKINAILPIREFTDSKFIFMATTAGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682
                 E       GK  + +  ++ +  V    G   V +     K + F+   +  M 
Sbjct: 656 KKTPLKEFENQRANGKIAIDLREDDTLVGVAVTDGQQNVLLFSSTGKAVCFNEADVRSMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR    ++G    VI   I    T ++     Y +          KRGG G +  
Sbjct: 716 RTASGVRGIRLQEG--QKVISLIIATEGTVLNITENGYGKRTKLEEFTCHKRGGQGLIAI 773

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 774 QTSARNGAVVGA 785



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 15/223 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      A L            + +  G ++       +        A+  +E D+L   
Sbjct: 626 EEGEKINAILPIREFTDSKFIFMATTAGTVKKTPLKEFENQRANGKIAIDLREDDTLVGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   +LL S+ GKA      ++ S       ++  I L   Q +++  +      +
Sbjct: 686 AVTDGQQNVLLFSSTGKAVCFNEADVRSMGRTASGVRG-IRLQEGQKVISLIIATEGT-V 743

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G     +  E   + R G+  + +     +   +  V+    D + ++ +   L
Sbjct: 744 LNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARNGAVVGAVLVNDNDEIMLITDGGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +   +D I  + R  +GV +     G    VI     EGL  +
Sbjct: 804 VRTPVDGISVVGRNTQGVTIIKL--GKNEKVIGVDRIEGLAGV 844


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/759 (33%), Positives = 412/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   EGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYDSLVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R
Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKKAYETGRGKVIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   ++
Sbjct: 243 SKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+ 
Sbjct: 303 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +A
Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQANA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +    
Sbjct: 422 ILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT        D     + +IE+  + + +++ G+I+          +     + A
Sbjct: 481 ----RRTEIVHGDGNDIDI--EDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQA 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D ++  + + T D IL  S  G+ Y L A  +        G  +  L+ L  ++
Sbjct: 535 MTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKDE 594

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L++ +  G        +  +  + G   + +   +++  V   T
Sbjct: 595 KIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDKYSSIRKNGLNAINLRENDELISVRVTT 654

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           GD ++    +N   + F  + +  M R   GV+  + +D    +V+  ++  +    +  
Sbjct: 655 GDCNIIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDD--DEVVSMEVASDERDLLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +     + +   ++ +  G I+              L+A++ +E D L   
Sbjct: 591 EKDEKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDKYSSIRKNGLNAINLRENDELISV 650

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+  + +G A      ++     +   ++  I L  + ++V+  V      L
Sbjct: 651 RVTTGDCNIIYATKNGYAIKFDENDVRPMGRNATGVKA-ITLRDDDEVVSMEVASDERDL 709

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKL 670
           LVVS  G        E     R GK  +     EK   +     V   D + ++ ++   
Sbjct: 710 LVVSENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGARSVEDEDELMLINDSGIA 769

Query: 671 LIFSIDQIPEMSRGK-GVRLQS 691
           +  ++  I   SR   GV L  
Sbjct: 770 IRINVSDISVTSRNAMGVTLMR 791



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 58/147 (39%), Gaps = 10/147 (6%)

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            +  +  G+        +R +  ++  + A+  ++ D +     A     +L++S +G  
Sbjct: 659 IIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVVSMEVASDERDLLVVSENGYG 718

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              P       +  G+ +           ++ A   +   +L++++  G A  +  S+I 
Sbjct: 719 KRTPIKEYTLQKRGGKGVITYKISEKTGLLIGARSVEDEDELMLINDSGIAIRINVSDIS 778

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKVT 657
             +R   G T ++   EEK+  + KV 
Sbjct: 779 VTSRNAMGVTLMRTVEEEKVVTIAKVN 805


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 400/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------- 418
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T+ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTTED 830


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/791 (33%), Positives = 408/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDE+I +I+N   P                     
Sbjct: 364 RTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ +        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGYGD-----VRRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   +    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R
Sbjct: 656 KTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++    +         L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSPEKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 419/762 (54%), Gaps = 32/762 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   +  VK +++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+   
Sbjct: 2   SEQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD+AAA 
Sbjct: 62  KAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM++++  +++ +++D +D+++ Y+  ++EP+V P++FPNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LAL +NP I+  +L+EYI GPDFPTG  IV     I  +Y  G+G 
Sbjct: 182 NIPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIV-GVSGIRRAYETGKGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  +E+   G   I+VTEIPYQV K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 241 ITIRAKAEIED-NNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++ ++L+ +++  + +++ F +NM  L  G  P+V+ +  +L  +L H+R
Sbjct: 300 MRIVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDG-RPKVLSIKEVLYHYLEHQR 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
            V+ RR+ F ++  + R  IL+GL IA  +IDEIIA+IR        +  ++  FSL+ +
Sbjct: 359 VVIRRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMENFSLSHD 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   L+ + +++ ++L   ++    I  E+ ++++ +
Sbjct: 419 QAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKAILADDEKVLAIIREELTDIRDRY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           +       RRT        + +   + +I ++ + + +S+ G+I+          K    
Sbjct: 479 NDE-----RRTIIT---FGEDSMEDEDLIPRQNVVITLSHNGYIKRIPLSTYRSQKRGGR 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +  +   + D ++     ++ D +L  +  GK Y L    + S      G  I  L+ +
Sbjct: 531 GVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSFNRTAKGIPIINLLQI 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ + T      +D    L  ++  G A            R G   + +   + +  V
Sbjct: 591 EKDEYVSTVIPVDEFDEERYLFFMTKDGIAKRTALKVFSNIRRGGLFAINLREGDALHGV 650

Query: 654 VKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLT 710
               G    +        + F  + +  M R   GV+  + ++     V+    I E   
Sbjct: 651 RLTDGTKEIIAGTRKGMSIRFHENDVRLMGRTATGVKGVTLQEN--DQVVGMDTIEEDQA 708

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + + +        +  RGG G        ++G  +S
Sbjct: 709 VLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKNGPLIS 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 16/216 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +     ++E     ++  G  +              L A++ +EGD+L  
Sbjct: 590 IEKDEYVSTVIPVDEFDEERYLFFMTKDGIAKRTALKVFSNIRRGGLFAINLREGDALHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 T  I+  +  G +      +  L+     G      + L  N  +V     +  
Sbjct: 650 VRLTDGTKEIIAGTRKGMSIRFHENDVRLMGRTATGVKG---VTLQENDQVVGMDTIEED 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +L+V+ KG       SE    TR GK      +   +   + L V      + ++  +
Sbjct: 707 QAVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKNGPLISLKVVSDDHDLMIITNS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++   +++I    R  +GVRL    D      + 
Sbjct: 767 GVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVA 802


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/791 (33%), Positives = 409/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDE+I +I+N   P                     
Sbjct: 364 RTIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ +  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   +    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  ++ +  V    GD  + +  +  K++ FS D++  M R
Sbjct: 656 KTPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++    +         L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSPEKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/791 (33%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKILGLKEILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLA 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 SAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L++  +    I  E+  +++ ++       RRT   E++        + +I +E
Sbjct: 486 AELLFILSNPDRLMEVIREELEAIRDQYNDP-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL+ S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              ++       G   + ++  +++  V    G D V +     K++ FS + +  M R 
Sbjct: 658 TALTDFSRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGIRLGEG--DSVVSLIIPRGDGCILTVTQNGFGKRTESTEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VSERNGPVIGA 786



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSAGIIAINLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + S       ++  I L     +V+  +      +
Sbjct: 686 DLTDGKDEVMLFSAAGKVVRFSEEAVRSMGRTATGVRG-IRLGEGDSVVSLIIPRGDGCI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTESTEYPTKSRATQGVISIKVSERNGPVIGAIQVDEADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    D 
Sbjct: 805 VRTRVSEVSTVGRNTQGVTLIRTADD 830


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/759 (33%), Positives = 415/759 (54%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   QGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNPEIS+ +L+  I GPDFPT GIIV  +  I ++Y  GRG   +R
Sbjct: 184 HNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIV-GKSGIRKAYETGRGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES  +   ++
Sbjct: 243 SRAEIEE-DKGKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +L+ ++  + EV+ 
Sbjct: 302 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLRHYIKFQEEVIT 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  +IDE+I +IR      + K  ++S+F L+E Q  A
Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQATA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ E   L+   +    +L+        I  E+ E+K  +    
Sbjct: 421 ILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYGDE- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               R++   +    D     + +IE++ + + +++ G+I+          K     + A
Sbjct: 480 ----RKSEIIQDEGNDIDI--EDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D ++  + A T D IL  +  G+ Y L A  +        G  +  LI L+  +
Sbjct: 534 MTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEE 593

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L++ + KG        +  +  + G   + +  ++++  V   T
Sbjct: 594 KIQNVIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDELISVRVTT 653

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           GD +V    +N   + F  + +  M R   GV+  + ++    +V+  ++  E    +  
Sbjct: 654 GDCNVIYATKNGYAIRFDENDVRPMGRTATGVKAITLRED--DEVVSMEVASENRDLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +  +     L +RGG G +  K   ++G  + +
Sbjct: 712 SENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +     +  +     +++   ++ + +G I+              L+A++ +E D L
Sbjct: 587 IPLDKEEKIQNVIYLKEFKEDTFLIMGTKKGLIKKTSLDKYASIRKNGLNAINLREDDEL 646

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ++  + +G A      ++         ++  I L  + ++V+  V    
Sbjct: 647 ISVRVTTGDCNVIYATKNGYAIRFDENDVRPMGRTATGVKA-ITLREDDEVVSMEVASEN 705

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
             LLVVS  G        +     R GK  +     EK   +     V   D + ++ ++
Sbjct: 706 RDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGARFVEDKDELMLINDS 765

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQS 691
              +  ++  I   SR   GV L  
Sbjct: 766 GIAIRINVSDISTTSRNAMGVTLMR 790



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 83/238 (34%), Gaps = 20/238 (8%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           + L +L  L++ +    +  L   KE    ++ + K          +   + ++     G
Sbjct: 581 MNLINLIPLDKEEKIQNVIYLKEFKEDTFLIMGTKKGLIK------KTSLDKYASIRKNG 634

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
                  E    D   +   +   +   +  +  G+        +R +   +  + A+  
Sbjct: 635 LNAINLRE----DDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPMGRTATGVKAITL 690

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +E D +     A     +L++S +G             R  G+ +           ++ A
Sbjct: 691 REDDEVVSMEVASENRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              +   +L++++  G A  +  S+I   +R   G T ++  + EK+  + KV    +
Sbjct: 751 RFVEDKDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEI 808


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/755 (33%), Positives = 416/755 (55%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   +   + + ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+     +KKSA
Sbjct: 9   IKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+S+VR+AQ F  R  L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ +++D VDF   Y+ E+ EPVV PS++PNLL NG +GIAVGMAT+IP HN+
Sbjct: 129 SKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +   ALI NP+I+  +L+EYI GPDFPT G  V     I ++Y  GRG   +RAR 
Sbjct: 189 REVIDGVQALIVNPDITSIELMEYIKGPDFPTYG-YVMGHSGIRQAYTTGRGSVTMRARA 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E+ G G   I+V E+PYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+   
Sbjct: 248 IIEDNG-GKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ +++  + M++ F +NM  L     P+V+ L  +L  +L H+ E++ RR+
Sbjct: 307 RRDVNPNVVLNNLYKQTQMQSTFGINMLALVNRE-PKVLNLRDMLYHYLQHQIEIIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR     D+ +  +++RFSL+  Q  AIL+
Sbjct: 366 EYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITRFSLSLEQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   LLA+  +  ++L   +   + I+ E+ E+KE F       
Sbjct: 426 MRLQRLTGLERDKIEAEYAELLAKIAEYKAILADEQLVLDIISTELNEIKERFGD----- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  +   L + +I +E + + I++ G+++          +     +  +  
Sbjct: 481 DRRT---EITIGEDEILDEDLIPREDVIISITHSGYVKRLPVTTYRSQRRGGRGVIGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    ++T   +L  +  GK Y L A  +   S    G  I  L+ +   + + 
Sbjct: 538 KDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDLSRTARGTPIINLLQIEQGEVVN 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +D+   L   + +G        +     + G   + +  ++ +  V    G+ 
Sbjct: 598 AVIPVEAFDNDKYLFFATRQGVVKKTPLDDYANIRKVGLIAISLREDDDLISVKLTDGNQ 657

Query: 661 VAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
             ++       + F    +  M R   GV+     +     VI  +I       +    +
Sbjct: 658 EIIMGTSQGMSIRFPEQDVRSMGRSATGVKGIQLDEE--DKVIGMEIVHPENDVLIVTSK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        +  RGG G        ++G  + 
Sbjct: 716 GYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTIVG 750



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +     + +      + +G ++            V L A+  +E D L  
Sbjct: 590 IEQGEVVNAVIPVEAFDNDKYLFFATRQGVVKKTPLDDYANIRKVGLIAISLREDDDLIS 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ ++ G +   P  ++ S       ++  I L+    ++   +      
Sbjct: 650 VKLTDGNQEIIMGTSQGMSIRFPEQDVRSMGRSATGVKG-IQLDEEDKVIGMEIVHPEND 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +L+V+SKG       +E    +R GK    ++  +K   +V +      + + ++  +  
Sbjct: 709 VLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTIVGLKVVENDEDLMIMTASGT 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++  S+D I  M R  +GV+L + ++      + 
Sbjct: 769 MIRTSMDGISTMGRNTQGVKLINIREDDAVSTVT 802



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 20/197 (10%)

Query: 465 LNSGKQQWNQ--IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           L+          IA  +RE  ++ S     G +               +Q          
Sbjct: 625 LDDYANIRKVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQD--------- 675

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                  +RS+   +  +  +   E D +      H  + +L++++ G     P      
Sbjct: 676 -------VRSMGRSATGVKGIQLDEEDKVIGMEIVHPENDVLIVTSKGYGKRTPVNEYRI 728

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
               G+ I+ L   + N  IV   V ++   L+++++ G         I    R   G  
Sbjct: 729 QSRGGKGIKTLNVTDKNGTIVGLKVVENDEDLMIMTASGTMIRTSMDGISTMGRNTQGVK 788

Query: 641 FLKVSSEEKMKLVVKVT 657
            + +  ++ +  V +V 
Sbjct: 789 LINIREDDAVSTVTRVA 805


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/803 (31%), Positives = 408/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +   + K
Sbjct: 6   KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNRPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   AL L+  P+ +I++L++ I  PDFPTGGI +     + E YR GRG   +RA
Sbjct: 186 NLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGI-IYGVSGVREGYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   EE GR G   I+V E+PYQV K  L+E+IAE +  K++  + DIRDES +    V+
Sbjct: 245 KTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+  P++++ ++F  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREV+ 
Sbjct: 305 IELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  IL+GL +A  NID+ IAIIR    P   +  ++SR          
Sbjct: 364 RRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVKSM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+E Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKILN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  +++A+  ++  +L   ++    I  E+++V   + +     RR     E+       
Sbjct: 484 EYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRS----EIELNASDL 539

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+         R+ K       A   KE D +     A+T D
Sbjct: 540 ETEDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L  ++ I            +    
Sbjct: 600 YILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S+G       ++     + G   + +   + +       G H V +  +  K +
Sbjct: 660 YIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GVR  + +D      +     E  + + +    + +         
Sbjct: 720 RFDENDVRPMGRTARGVRGMNLEDDQKVIAMLVAGDESQSVLTATENGFGKRTPIAEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQTSERNGKVVAA 802



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 13/193 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                   + +++G ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPDNHYIFMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ + +L  +Q ++   V  D +  +L  +  G      
Sbjct: 715 AGKAVRFDENDVRPMGRTARGVRGM-NLEDDQKVIAMLVAGDESQSVLTATENGFGKRTP 773

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+   VV  T     D + ++     L+   + ++ EM R
Sbjct: 774 IAEYTRHGRGTKGMIAIQTSERNGKVVAATLVNENDEIMLITTGGVLIRTRVSEVREMGR 833

Query: 684 GK-GVRLQSYKDG 695
              GV L + ++G
Sbjct: 834 ATQGVTLIAVEEG 846


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 410/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++           S  L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSPEKFIFMATGDGTVKKTSLDQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFNEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/739 (52%), Positives = 529/739 (71%), Gaps = 6/739 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    +  AL +RYLAYALSTI  RA+PD+RDG KPV RRI++ M  + LD    ++K
Sbjct: 11  DRIINEPMSEALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVLRLDPEGGYRK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A+IVG+V+G  HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGDSAAAYRYTEA
Sbjct: 71  CAKIVGDVMGNYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAYRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AEL+++G+DE+AVDFR  Y E D EPVV P+ FPNLLANG +GIAVGMATSIP H
Sbjct: 131 RMTRGAELLMEGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIAVGMATSIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV EI +AA  LI+ P+ + E+L+E++ GPDFPTGG+IVE R S++E+Y  GRG FR+RA
Sbjct: 191 NVAEIIDAARHLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYETGRGAFRMRA 250

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           RW VE+ GRG++ I+VTEIPYQVQKSRL+EK++EL+ AK++PLLED+RDESAEDVR+VL 
Sbjct: 251 RWHVEDTGRGTYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDESAEDVRLVLV 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P+ ++++PD+LMES+F   D+ETRF LNMNVL  G  PQVM L  +L+ +L HRREV+ R
Sbjct: 311 PRAKTVEPDVLMESLFRTCDLETRFSLNMNVLHKGA-PQVMGLRDVLQAYLDHRREVVVR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R+ FR+  I++R+ IL+G L AYLNIDE+I IIR ED+PKPV++ RF +++ Q +AILNL
Sbjct: 370 RAEFRLDKIEKRLHILEGFLKAYLNIDEVIRIIRTEDEPKPVLMKRFKISDIQAEAILNL 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+LRKLEE +I+ E   L  E++++  L+ S ++QW +++ E++  ++ F  ST LGR
Sbjct: 430 RLRALRKLEEMEIQGEHTKLTEERDELVLLIGSVRRQWTRVSKELKAARDEFDPSTALGR 489

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR TF +    D A   +A   KEP+TVV+S +GWIR +K H +D   + FKEGD     
Sbjct: 490 RRATFEQAPTVDLAAALEATRPKEPVTVVLSAQGWIRGMKGHGLDPDTIKFKEGDGPSFT 549

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               +TD+++ +S+DG+A+ LPA  L  GRGHGE I++ I+L  N  IV  F ++   K 
Sbjct: 550 EEVMSTDKLVFMSSDGRAFMLPADKLPGGRGHGEPIRISIELEDNVAIVGMFKFEPERKR 609

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           ++ SS G  F+V E+E+ +N + GK  +       + + V V GD +AVVG NRK+LIF 
Sbjct: 610 VMASSTGYGFVVPEAELESNRKAGKQIVNTGGG-HLNVCVPVLGDMIAVVGTNRKMLIFP 668

Query: 675 IDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +  +PEM RGKG +LQSY  G  ++D+I F   +GL  +        R+  +   W G+R
Sbjct: 669 LKDLPEMPRGKGNKLQSYSGGAELADLITFDKRDGLIVVTGGRF---RAFEEWKEWKGQR 725

Query: 734 GGVGSLVPKGFPRSGKFLS 752
              G +VPKGFPR+G F  
Sbjct: 726 AQAGKVVPKGFPRTGTFSG 744


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/741 (50%), Positives = 528/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 LPHNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P +R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/796 (31%), Positives = 403/796 (50%), Gaps = 71/796 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ VDF   Y+  + EP V P++ PNLL NG+SGIAVGMAT++P HN++E
Sbjct: 130 IAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L  ID PE +++ L+E I  PDFPT GI +   + + E YR GRG   +RA+   
Sbjct: 190 VVAACLYAIDAPECTVDDLIELIPAPDFPTAGI-IYGIQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ + G   I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +D   V+    
Sbjct: 249 EDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGINMVALVDGQ-PRLLNLRDLIFYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------- 416
           F ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVREMLSRT 427

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q   ILN+RL+ L  LE+ +I +E   
Sbjct: 428 ELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L+  ++    I  E+  +   F+        R +  E +  +  T  + 
Sbjct: 488 VIDQIADLLDILSKPERINQIIKDELTSIGNEFADE------RRSMIEFNATELGT--ED 539

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+I+S         K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILY 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSS 619
            S  G+ Y L    +   S    G  I  +  L   + I          D    + + +S
Sbjct: 600 FSNAGRVYWLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFEDEDKYVFMATS 659

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G     + S+     ++G   + +   + +       G + V +  ++ K + F  + +
Sbjct: 660 LGTVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDV 719

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + ++G     +     E  + + +    + +           RG  G
Sbjct: 720 RAMGRNARGVRGMNLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTKG 779

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +S+
Sbjct: 780 MIAIQTSERNGKVVSA 795



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 84/210 (40%), Gaps = 13/210 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +       ++  +++    + ++ G ++  K           + A++  EGD L
Sbjct: 631 PLAEGEKITAVLPVKSFEDEDKYVFMATSLGTVKKSKLSDFSRPMKRGIIAVNLDEGDFL 690

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A   + T+ ++L S  GKA      ++ +   +   ++ + +L   Q ++   V +S 
Sbjct: 691 IGAAMTNGTNDVMLFSDSGKAVRFDENDVRAMGRNARGVRGM-NLEEGQRVIAMLVAESE 749

Query: 612 CK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGE 666
            + +L  +  G       SE   + R  K  + + + E+    +  V+    D + ++  
Sbjct: 750 QQSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTSERNGKVVSAVLVNPTDEIMLITT 809

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              L+   + +I EM R   GV L S  +G
Sbjct: 810 GGVLVRTRVSEIREMGRATQGVTLISVDEG 839


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYND-----VRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T+ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/796 (31%), Positives = 401/796 (50%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TPFAKETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L++NP+  IE+L+  +  PDFPT  + +     + + YR GRG  
Sbjct: 182 IPPHNLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAAL-IYGLSGVHDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  + +IRDES +  
Sbjct: 241 VMRARTHFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R+  P++++ ++F  + ++  F +NM  L  G+ P+ + L  +L  +L+HRR
Sbjct: 301 MRVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGK-PRTLNLKQMLDCFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------- 408
           EV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+                     
Sbjct: 360 EVITRRTVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSAL 419

Query: 409 -NEDKPKPVMVSR---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             E   + +  S                + L++ Q  AIL LRL+ L  LE+ +I +E  
Sbjct: 420 VEEMLARALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L +  +    I  E+  ++  F        RR+   E+         +
Sbjct: 480 EVMDVITDLLDILANPPRITAIIVEELGAIRHQFDDP-----RRS---EIVLNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+         R+ +       A   K+ D +     A+T D IL
Sbjct: 532 DLIAPEDMVVTLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYIL 591

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    +  G     G  I  L  L   + I        +D    + + ++
Sbjct: 592 CFSSRGRVYWLKVYEVPEGTRNSRGRPIVNLFPLMEGEKINAVLPVQAFDDDHFVFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G     +   +++  V    G+  V +  +  K + F    +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + ++G     +     E L+ + +    Y +           RG  G
Sbjct: 712 RPMGREARGVRGMNLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK + +
Sbjct: 772 MIAIQTSDRNGKLVGA 787



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
               A L     + +    + +  G ++              + A +  +GD L      
Sbjct: 629 EKINAVLPVQAFDDDHFVFMATAEGTVKKTALTAFSNPRKAGIIAANLDDGDRLIGVAIT 688

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLV 616
                ++L S  GKA   P G++         ++ + +L   Q ++   V  D    +L 
Sbjct: 689 DGNSDVMLFSDAGKAVRFPEGDVRPMGREARGVRGM-NLEEGQRVIAMLVAKDEELSVLT 747

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLI 672
            +  G       +E   + R  K  + + + ++    +   +    D V ++     L+ 
Sbjct: 748 ATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIR 807

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDG----GISDVICFKICE 707
             +  I E+ R   GV L +  +G    GI  V   ++ E
Sbjct: 808 TRVQDIRELGRATQGVTLINLDEGTSLAGIEKVAESEVDE 847


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/805 (32%), Positives = 413/805 (51%), Gaps = 69/805 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA +DN +I+IE+L+E+I GPDFPT  I +  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAI-INGRRGILDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +R
Sbjct: 240 RTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIS 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ + ++    R  IL+ L +A  NID +I +IR    P         
Sbjct: 359 AFIRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIA 418

Query: 417 --------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                              ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 419 QPWDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E  +LL +  ++  +L S ++    I  E+  +K+ ++       RRT   E++ 
Sbjct: 479 EKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDP-----RRT---EITE 530

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+++          +      SA   KE D +   L 
Sbjct: 531 NTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 590

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+  
Sbjct: 591 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEG 650

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G        +       G   + ++  +++  V      + V +   + K+
Sbjct: 651 KFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKV 710

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLG 728
           + F+ D +  M R   GVR     D     V+   I  G    +      Y +       
Sbjct: 711 VRFAEDCVRPMGRTATGVRGMKLSDD--DKVVSLIIPRGDGDILTVTENGYGKRTAQSEY 768

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
               R   G +  K   R+GK + +
Sbjct: 769 PTKNRATQGVISIKVSERNGKVVGA 793



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 633 EQNERITAILPVREYEEGKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGV 692

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               +T+ ++L S DGK        +         ++ +  L+ +  +V+  +      +
Sbjct: 693 DLTDSTNEVMLFSADGKVVRFAEDCVRPMGRTATGVRGM-KLSDDDKVVSLIIPRGDGDI 751

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      +SE     R   G   +KVS    K+   ++V   D + ++     L
Sbjct: 752 LTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTL 811

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +   + ++  + R  +GV L    +G + 
Sbjct: 812 VRTRVSEVSIVGRNTQGVTLIRTTEGELV 840


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPETQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/756 (34%), Positives = 408/756 (53%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+I+NP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+
Sbjct: 186 LSEVIDGIVAIIENPQLTFEELVEMIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+ 
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +L+  ++  + M++ F + M  +     P+V+ L   +  ++ HR+E++ R
Sbjct: 305 ELKKDENPTILLNHLYKQTQMQSSFGIIMLAIV-HNRPRVLTLRETIDFFIEHRKEIVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  N+DE+IA+I+      + K  ++ RF L++ Q  AI
Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMERFGLSDLQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F     
Sbjct: 424 LDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELIELKDKFGDK-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E+         +  I +E + V IS+ G+I+          +      + +
Sbjct: 482 ---RRS---EIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             KE D ++    A T D ++  +  GK Y L    +        G+AI  L++L  N+ 
Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        +     +++ +  G        E       G   + +   +K+  V    G
Sbjct: 596 ITAILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLISVALTDG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSA 715
              V +   N K + F  D +  + R  +GVR  + +D  +  +          T     
Sbjct: 656 KQDVLLATANGKAIRFKEDDVRTVGRVSRGVRGMALEDDVVIGMAILNEHFTDSTIFTVT 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              Y +           RGG G +  K   R+G+ +
Sbjct: 716 ENGYGKRTEISEYRTQSRGGKGVITIKTTERNGQVV 751



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 80/219 (36%), Gaps = 15/219 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
            +    A L       +   ++ +  G ++              + A++  EGD L    
Sbjct: 592 ANEKITAILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLISVA 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCK 613
                  +LL + +GKA      ++ +       ++ +  L  +  I  A +  + +   
Sbjct: 652 LTDGKQDVLLATANGKAIRFKEDDVRTVGRVSRGVRGMA-LEDDVVIGMAILNEHFTDST 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +  V+  G     E SE    +R GK  + + + E+   VV +      + + ++ +  K
Sbjct: 711 IFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERNGQVVDIKQVNDDNDLMLITDQGK 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +L   +     + R  +GVRL   K+     V   ++ E
Sbjct: 771 ILRVQVSGFSIIGRNTQGVRLM-VKEENERVVAVARLAE 808


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYLRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVAL-HQGQPKLLNLKDILQAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 AALIFILENPDRLMEVIREELVAIKEQYNDG-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              ++       G   + ++  +++  V    G + V +   N K++ F   Q+  M R 
Sbjct: 658 TALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +  +G    VI   +  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINLGEG--DSVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G+ + +
Sbjct: 776 VSERNGQVVGA 786



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK    P   + S       ++  I+L     +++  V      +
Sbjct: 686 DLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATGVRG-INLGEGDSVISLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V   T D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVDTTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/741 (50%), Positives = 528/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+  F LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMEWFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/788 (32%), Positives = 410/788 (52%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L  +D+D VDF   Y+  ++EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + ++DNP ISI++LL +I GPDFPT GI +     I E YR GRG   +RAR   
Sbjct: 190 VINACVEILDNPNISIDELLNFIPGPDFPTAGI-IHGNSGIKEGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE  +G    I++ E+PYQV K  L+EKIAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDSFGINMVALIDGQ-PKLLNLKQVLDAFLNHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR-------------- 420
           F ++    R  IL+GL +A  N+DE+I II++     + K  ++ R              
Sbjct: 368 FELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQG 427

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 DATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +LN   +  + I  E+ E+KE +        RR+   E +        + +I  + +
Sbjct: 488 LIDILNKPDRVTSIIKTELEEIKETYGD-----DRRSEIVENAE---DLSIEDLIAPQDM 539

Query: 521 TVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+I+        + K       A   K+ D +     A++ D IL  S+ G+ 
Sbjct: 540 VVTLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQV 599

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVE 627
           Y L    +  G     G+ I  L  L   +    I+T   +     + + ++KG      
Sbjct: 600 YWLKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFVDNEYIFMATAKGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   +K+ + + +       G+  + +V  + K + F    +  M R  +
Sbjct: 660 LSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNAR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     DGG    +     E  + + +    Y +           RG  G    +   
Sbjct: 720 GVRGMKLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSD 779

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 780 RNGQVVGA 787



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 11/203 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L            + + +G ++              + A+    GD L  A   
Sbjct: 629 EKINAILTVKEFVDNEYIFMATAKGTVKKTPLSDFSNPRKSGIIAIKLDNGDYLIGAGIT 688

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L+S  GKA      ++ S   +   ++ +   +  + +      +    ++V 
Sbjct: 689 KGENDIVLVSNHGKAVWFGESDVRSMGRNARGVRGMKLTDGGEVLSLLIAENEAQSVMVA 748

Query: 618 SSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIF 673
           +  G       SE   + R  +G   ++VS      +  K+ GDH  + ++     L+  
Sbjct: 749 TENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRNGQVVGAKLVGDHDELMLITTGGVLIRT 808

Query: 674 SIDQIPEMSRGK-GVRLQSYKDG 695
            + +I E+ R   GV L +  D 
Sbjct: 809 RVSEIRELGRATQGVTLINLSDD 831



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 17/185 (9%)

Query: 491 DLGRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDL 540
           D    R +     + D     +   + + E   V++SN G         +RS+  ++  +
Sbjct: 662 DFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMGRNARGV 721

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             +   +G  +   L A    + ++++T+   GK   L      SGRG  + ++ +   +
Sbjct: 722 RGMKLTDGGEVLSLLIAENEAQSVMVATENGYGKRTLLSEFRR-SGRGT-QGVKAIQVSD 779

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
            N  +V A +     +L+++++ G       SEI    R   G T + +S +EK++ + K
Sbjct: 780 RNGQVVGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEK 839

Query: 656 VTGDH 660
           V    
Sbjct: 840 VAESE 844


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/759 (33%), Positives = 412/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     ++
Sbjct: 4   EGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+MT+V   +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+       IDNP+IS+ +L+  I GPDFPT GIIV  +  I  +Y  GRG   +R
Sbjct: 184 HNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKRAYETGRGKVVIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE  +G   IVVTEIPYQV K+RLIE IA L+  KRI  + D+RDES      ++
Sbjct: 243 SKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + M+  F + M  L  G  P+V+ L  +LK ++  + EV+ 
Sbjct: 303 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  +IDE+I +IR+     + +  ++S+F+L+E Q +A
Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQANA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ E   L+   +    +L++       I  E+ E+K  +    
Sbjct: 422 ILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT        D     + +IE++ + + +++ G+I+          +     + A
Sbjct: 481 ----RRTEIVHGDGNDIDI--EDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGIQA 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D ++  + + T D IL  S  G+ Y L A  +        G  +  L+ L  N+
Sbjct: 535 MTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLINLLPLEKNE 594

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L++ +  G        +  +  + G   + +   +++  V   T
Sbjct: 595 KIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSIRKNGLNAINLRENDELISVRVTT 654

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDS 714
           GD ++    +N   + F  +    M R   GV+  + +D    +V+  ++  +    +  
Sbjct: 655 GDCNIIYATKNGYAIKFDENDARPMGRNATGVKAITLRDD--DEVVSMEVASDERDLLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   Y +        L KRGG G +  K   ++G  + +
Sbjct: 713 SENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGA 751



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 17/221 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +   +  +     + +   ++ +  G I+              L+A++ +E D L   
Sbjct: 591 EKNEKIQNVIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSIRKNGLNAINLRENDELISV 650

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                   I+  + +G A      +    R  G     +  I L  + ++V+  V     
Sbjct: 651 RVTTGDCNIIYATKNGYAIKFDEND---ARPMGRNATGVKAITLRDDDEVVSMEVASDER 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            LLVVS  G        E     R GK  +     EK   +     V   D + ++ ++ 
Sbjct: 708 DLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISEKTGLLIGARSVEDEDELMLINDSG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVICFKICE 707
             +  ++  I   SR   GV L    ++  +  +    I E
Sbjct: 768 IAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITE 808


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 410/791 (51%), Gaps = 64/791 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  ++L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+  ++KK
Sbjct: 6   KEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  +SEP VFP++ P LL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALID PE+ +  L+E+I GPDFPT GII  +R  I E+YR GRG   +RA
Sbjct: 186 NINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGAR-GIREAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  VEE   G   IVVTEIPYQV K+RL+EKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L     P++M L  +L+ ++AHRREV+ R
Sbjct: 305 ELRRGEVGEVILNNLYAQTQLQTVFGINMVAL-DKGQPRLMNLKQVLEAFIAHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R+ + ++    R  IL+GL +A  NID IIA+I+    P                     
Sbjct: 364 RTLYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGML 423

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+  Q  AIL+L+L  L  LE+ +I  E   LL +
Sbjct: 424 ERAGADATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEK 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++ ++L +  +    +  E+ E+++ +        RRT   E+ +       + +I +
Sbjct: 484 IAELLNILRNPDRLTEVVRDELVELRDSYGDE-----RRT---EIYQNQSDLTVEDLINE 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V +S+ G+         ++ K      SA   K+ D ++    A T D +L  S+ 
Sbjct: 536 QDVVVTLSHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSY 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y      L   S    G+ I  L+ L   + I        +     + + ++ G   
Sbjct: 596 GKVYWKKVYELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFTDDEFVFMATANGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               S        G   L +   +++  V +  G   + +  ++ K + F+   +  M R
Sbjct: 656 RTALSNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D     ++   I E    + +    Y +           RGG G L  K
Sbjct: 716 TAAGVRGIRLSDEQT--MVGLIIVEDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIK 773

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 774 TSDRNGGVVGA 784



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 19/229 (8%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
           K+++         R          E      A L       +    + +  G ++     
Sbjct: 601 KKVYELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFTDDEFVFMATANGTVKRTALS 660

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + AL  ++GD L           I+L +  GKA      ++         +
Sbjct: 661 NFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPMGRTAAGV 720

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           +  I L+  Q +V   +      +L  +  G        +     R G   L + + ++ 
Sbjct: 721 RG-IRLSDEQTMVGLIIV-EDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRN 778

Query: 650 ---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +  V   T D + ++     L+  +++ I  MSR  +GVRL    D
Sbjct: 779 GGVVGAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDD 827


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 408/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+ +I GPDFPT  I +  +  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAI-INGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKDILAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA +NID II +IR+   P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  ++E ++ +     RRT   E++        + +I +E
Sbjct: 486 AELLFILRSPERLMEVIREELEAIREQYNDA-----RRT---EITHNSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  + +D      +     +G   +      + +        +  R   G +  K 
Sbjct: 718 ATGVRGINLQDDDRVVSLIVPRGDGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+GK + +
Sbjct: 777 SERNGKVVGA 786



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 74/202 (36%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EQDERITAILPVREYEEGMNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + +       ++  I+L  +  +V+  V      +
Sbjct: 686 DLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATGVRG-INLQDDDRVVSLIVPRGDGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R  K  + +   E+    +  V   T D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++  + R  +GV L  
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIR 826


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVGLS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T+ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTTED 830


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/759 (34%), Positives = 411/759 (54%), Gaps = 35/759 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+IDNP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+
Sbjct: 186 LTEVIDGIVAVIDNPQLTFEELVELIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +L+  ++  + M++ F + M  +     P+V+ L   +  ++ HR+E++ R
Sbjct: 305 ELKKDENPTILLNHLYKQTQMQSSFGIIMLAIVN-SRPRVLTLRETIDFFIEHRKEIVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  N+DE+IA+I+      + K  ++ RF L++ Q  AI
Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F     
Sbjct: 424 LDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDK-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E+         +  I +E + V IS+ G+I+          +      + +
Sbjct: 482 ---RRS---EIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             KE D ++    A T D ++  +  GK Y L    +        G+AI  L++L  N+ 
Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I T      +     +++ +  G        E       G   + +   +K+  V    G
Sbjct: 596 ITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE----GLTWI 712
              V +   N K + F  + +  + R  +GVR  + +D  +  VI  +I        T  
Sbjct: 656 KQDVLLASANGKAIRFKEEDVRTVGRVSRGVRGMTLEDEDV--VIGMEILNENFTDSTIF 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 Y +           RGG G +  K   R+G  +
Sbjct: 714 TVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVV 752



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
            +      L       +   ++ +  G ++              + A++  EGD L    
Sbjct: 592 ANEKITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVA 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TC 612
                  +LL S +GKA      ++ +       ++ +  L     ++   + +      
Sbjct: 652 LTDGKQDVLLASANGKAIRFKEEDVRTVGRVSRGVRGM-TLEDEDVVIGMEILNENFTDS 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +  V+  G     E SE  + +R GK  + + + E+   VV +      + + ++ +  
Sbjct: 711 TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQG 770

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           K+L   +     + R  +GVRL   K+     V   ++ E
Sbjct: 771 KILRVPVAGFSIIGRNTQGVRLM-VKEENERVVAVARLAE 809


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE +S +     RRT   E++        + +I +E
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYSDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPETQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +D  +  +      E    I    
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGE 852


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/796 (31%), Positives = 391/796 (49%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +A L L+  P+  IE L++ +  PDFPT G+ +     + E YR GRG  
Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGL-IYGLAGVREGYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E +G+     I+V E+PYQV K  L E++AEL+  K+I  + +IRDES +  
Sbjct: 241 IMRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++  +F  + ++  F +NM  L  G+ P+++ L  +L  +L HRR
Sbjct: 301 MRLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGK-PRLLNLKQMLVCFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           EV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+    P        +       
Sbjct: 360 EVVTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSAL 419

Query: 423 ------------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                         L+E Q  AIL LRL+ L  LE+ +I  E  
Sbjct: 420 VEEMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYR 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +L   ++    I  E+  ++  F        RR+   E+         +
Sbjct: 480 EVMDVITDLLDILARPERITAIIVEELGAIRNQFGDP-----RRS---ELVMNTAEINIE 531

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+         R+ +       A   K+ D +     A+T D +L
Sbjct: 532 DLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVL 591

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S  G+ Y L    +  G     G+ I  L  L   + I        +D    + + +S
Sbjct: 592 CFSNRGRCYWLKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATS 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           +G       +      + G   + +   + +  V    G   V +  +  K + F+   +
Sbjct: 652 EGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R  +GVR  + +DG     +     E  + + +    Y +           RG  G
Sbjct: 712 RPMGRDARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPVAEYTRHGRGTKG 771

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+G+ + +
Sbjct: 772 MIAIQTSDRNGRLVGA 787



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 13/204 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
               A L     ++E    + ++ G ++              + A++  +GD L      
Sbjct: 629 EKITAVLPIKEFDEEHFVFMATSEGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAIT 688

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLV 616
                ++L S  GKA      ++         ++ +  L   Q ++   V  D +  +L 
Sbjct: 689 DGQCDVMLFSDAGKAVRFAETDVRPMGRDARGVRGM-TLEDGQAVIAMLVAKDESQSVLT 747

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLI 672
            +  G       +E   + R  K  + + + ++   +   V V   D V ++     L+ 
Sbjct: 748 ATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGRLVGAVLVEPSDEVMLISTGGVLIR 807

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDG 695
            S++ I EM R  +GV L +  +G
Sbjct: 808 TSVESIREMGRSTQGVTLINLDEG 831


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/765 (48%), Positives = 529/765 (69%), Gaps = 16/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +   +       +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ A
Sbjct: 1   MASKDQGPAEPDSPAAIVDAPFETALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ L   +A+KKSAR+VGEV+GK HPHGD +VYD++VRLAQPF  RYPL+ GQGNFGN
Sbjct: 61  MRQLRLSPDSAYKKSARVVGEVLGKYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EPV+FP  FPNLLANG 
Sbjct: 121 IDGDNAAAARYTEARLTRTAISLMAGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IPSHNV E+ EA L +I+NP +   +L++ + GPD  TGG+IV+S E+I 
Sbjct: 181 SGIAVGMATNIPSHNVDEVIEATLEVIENPAVEHARLMQIMQGPDLATGGLIVDSPETIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y  GRG FR+RAR+              +E +G G W ++++EIPYQV K +LIE+IA
Sbjct: 241 AAYETGRGSFRIRARFHAAEAESAADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           ++I  K++P+LED+RDES E +RIVL P++R++DP+LL ES++ L+D+ETRF LNMNVL 
Sbjct: 301 QVIADKKVPILEDVRDESDEQIRIVLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P VM L  +L+ W+A + ++L RR+  R+  I  R+E+L+G +IA+LN+D +I II
Sbjct: 361 ATRTPMVMGLKELLQNWIASQIDILQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE Q++ E D+LL E++++  LL S
Sbjct: 421 RTEDEPKPVMMAEFGLTDRQTEAILNMRLRSLRKLEEMQLRQEKDDLLKEQDELQKLLES 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ + K T LG RRTT  E           AMIEKEP TV++S R
Sbjct: 481 PVRQRTRLKRDLNALRKEYGKDTALGARRTTIDEAEPT-VEFSMDAMIEKEPTTVILSAR 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR+ K H+       FKEGD L  A HA TTD++L+ + DG+ YTL A  L   RG G
Sbjct: 540 GWIRAAKGHADLSQEWKFKEGDELAFAFHAQTTDKLLIATDDGRFYTLGADKLPGARGFG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E ++ ++D++++  IV A+ +    +LL+ S+ G  F+++  +++A TRKG+  + +  +
Sbjct: 600 EPVRTMVDIDNSAHIVFAWAHKPGERLLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGD 659

Query: 648 EKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
            K+  V  +    DHVAVVG+NRKL++F+++++PEMSRG+GV+LQ Y+DGG++DV  F++
Sbjct: 660 AKLARVAHIGEGHDHVAVVGDNRKLVVFNLEEMPEMSRGQGVQLQRYRDGGMADVTTFRL 719

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            EGL+W         R+E ++  W   RGG G + P+GFPR  +F
Sbjct: 720 EEGLSWQMGGTGERTRTEMEMWQWKVARGGAGRMPPQGFPRDNRF 764


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/804 (32%), Positives = 412/804 (51%), Gaps = 67/804 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA +DN +I+IE+L+EYI GPDFPT  I +  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAI-INGRRGILDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +R
Sbjct: 240 RTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++  +F  + M+  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID +I +IR    P         
Sbjct: 359 AFIRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIA 418

Query: 417 --------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                              ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 419 QPWDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E   LL +  ++  +L S ++  + I  E+  +K  ++       RRT   E++ 
Sbjct: 479 EKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRT---EITE 530

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+++          +      SA   KE D +   L 
Sbjct: 531 NTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 590

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+  
Sbjct: 591 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEG 650

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G        +       G   + ++  +++  V    G +   +   + K+
Sbjct: 651 KFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKV 710

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F+ + +  M R   GVR     D      +     EG   +      Y +        
Sbjct: 711 VRFAEECVRPMGRTATGVRGMKLVDDDKVVSLIIPRGEGD-ILTVTENGYGKRTVQSEYP 769

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              R   G +  K   R+GK + +
Sbjct: 770 TKNRATQGVISIKVSERNGKVVGA 793



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 12/209 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 633 EQDERITAILPVREYEEGKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGV 692

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++  +L S DGK        +         ++ +  L  +  +V+  +      +
Sbjct: 693 DLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATGVRGM-KLVDDDKVVSLIIPRGEGDI 751

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      +SE     R   G   +KVS    K+   ++V   D + ++     L
Sbjct: 752 LTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTL 811

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +   + ++  + R  +GV L    +  + 
Sbjct: 812 VRTRVSEVSIVGRNTQGVTLIRTTEDELV 840


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALI++  I+IE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++ +     RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +D  +  +      E    I    
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGE 852


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/790 (33%), Positives = 409/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  +  I E+YR GRG   +RAR 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAI-INGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA +NID II +IR+   P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LT+ Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  ++E+++ +     RRT   E++        + +I +E
Sbjct: 486 AELLFILRSPERLMEVIREELVAIRELYNDA-----RRT---EITHNSADINIEDLISEE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWLKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  + +D      +     EG   +      + +        +  R   G +  K 
Sbjct: 718 ATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 SERNGNVVGA 786



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EQDERITAILPVREYEEGMNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + +       ++  I+L  +  +V+  V      +
Sbjct: 686 DLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATGVRG-INLQDDDRVVSLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R  K  + +     +   +  V   + D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQVDSADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 401/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------- 418
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GVIAIQTSERNGRVVAA 796



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGVIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/791 (32%), Positives = 410/791 (51%), Gaps = 66/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSAR+
Sbjct: 42  QISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARV 101

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+ AA RYTE RM++
Sbjct: 102 VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMRYTEIRMSR 161

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 162 IAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATNIPPHNLNE 221

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NPEI+IE L+E I GPDFPT  + +     + E YR GRG   +RAR   
Sbjct: 222 VTDACLALLKNPEIAIEDLIELIPGPDFPTAAL-IYGVTGVKEGYRTGRGRVIMRARTHF 280

Query: 259 EEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +  G   IV+ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V+   
Sbjct: 281 EDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVIEL 340

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+  P++++ +++  + M+  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RRS
Sbjct: 341 RRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRS 399

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  +L+GL +A  N+DE+IA+I+    P   K  ++SR             
Sbjct: 400 VFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLVEQMLAR 459

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L++ Q  AIL LRL+ L  LE+ +I SE  +++  
Sbjct: 460 AAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEYRDVMER 519

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  +K+ F        RR+   E+    +    + +I  
Sbjct: 520 IADLLDILARPERITAIITEELVAMKQQFGDK-----RRS---EIVINTQDLSMEDLIAS 571

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+I+S         K       A   K+ D +     A+T D IL  S+ 
Sbjct: 572 EDVVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSR 631

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +   ++  G     G  I  L+ L + + I        +D    + + +S G   
Sbjct: 632 GRVYWIKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPIKTFDDNRYVFMATSLGTVK 691

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               SE       G   + +  ++ +  V    G H V +  +  K + F  + +  M R
Sbjct: 692 KTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPMGR 751

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G +GVR  +   G     +     E    + +    Y +           RG  G +  K
Sbjct: 752 GARGVRGMTLGKGQKVISLLVAESEEQAVLTATENGYGKRTPISEYTRHGRGSQGMIAIK 811

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 812 TTQRNGKVVGA 822



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 17/225 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L     +      + ++ G ++              + A+   E D L   
Sbjct: 661 EYGEKINAVLPIKTFDDNRYVFMATSLGTVKKTPLSEFSRPRASGIIAVGLDEDDFLIGV 720

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
                   ++L S  GKA      ++         ++ +  L   Q +++  V +S  + 
Sbjct: 721 ALTEGKHDVMLFSDGGKAVRFDENDVRPMGRGARGVRGM-TLGKGQKVISLLVAESEEQA 779

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKV-TGDHVAVVGENRK 669
           +L  +  G       SE   + R  +  + + +     K+     V   D + ++     
Sbjct: 780 VLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRNGKVVGARLVREDDEIMLITTGGV 839

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG----GISDVICFKICEGL 709
           L+   + ++ EMSR   GV L +  +G    G+  V+      GL
Sbjct: 840 LIRTRVKEVREMSRATQGVILINLDEGEKLAGLERVVETDEAPGL 884


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/803 (33%), Positives = 412/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  LA ID+  ISIE LLEYI GPDFPT  I +  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAI-INGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L  G+ P+++ L  IL+
Sbjct: 300 DESDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQ-PRLLNLKEILE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIA 418

Query: 417 -------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                             ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHD 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   LL +   +  +L S ++    I  E+  VKE +        RRT   E S  
Sbjct: 479 KILDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRD-----VRRTEITENSA- 532

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+++          +      SA   KE D ++  L A
Sbjct: 533 --DINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        +D   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREFDDGH 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ + +  M R   GVR      G     +     EG   +      Y +         
Sbjct: 711 RFAENAVRPMGRTATGVRGIKLHAGDKVVSLIVPRGEGD-ILTVTENGYGKRTEQSEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     +      + +  G ++        +  S  + A++  EGD L   
Sbjct: 632 EQNERITAILPVREFDDGHYVFMATASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGV 691

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + ++L S  GK        +         ++  I L+    +V+  V      +
Sbjct: 692 DLTAGKNEVMLFSAGGKVVRFAENAVRPMGRTATGVRG-IKLHAGDKVVSLIVPRGEGDI 750

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E+SE    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 751 LTVTENGYGKRTEQSEYPTKSRATQGVISIKVSERNGNVVGAIQVEKTDQIMMITDAGTL 810

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 811 VRTRVAEVSIVGRNTQGVTLIRTAED 836


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/737 (47%), Positives = 486/737 (65%), Gaps = 12/737 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SNT   E +   +LR  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + LD 
Sbjct: 2   SNTF--EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDP 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F  RYPL+ GQGNFGNIDGDSAAA
Sbjct: 60  NSPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAA 119

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T VA+ +L+ ++ D VDF  TY+    EPVV P++FPNLLANG+SGIAVGM+
Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HNV EI +A L LI  P  SIE+L++++  PDFPTGGI++      +E Y  GRG
Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RARW VE++GRG W IVVTEIPYQVQKSRLIE+IA+L+I ++ P L ++RDES E+
Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL P+ R+LDP+L+M  +F  SD+E+R   N+NV+  G  P+V+ L GIL+ WL HR
Sbjct: 300 LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             V  RR+S+ ++ I  R+ +L+  LI +LNIDE+I II+  D P PV+++RFSL E Q 
Sbjct: 360 FVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEIQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AILN+RLR+LRKLEE +I+ E++ L A  + ++++L   K  W  I  E++  ++ F+ 
Sbjct: 420 EAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEFAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R T    S  D     +  +EKEPI+V++S  GW+++ K H V+   L FK  
Sbjct: 480 ------VRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGD 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  +   +T   +  +S  GK +T+ A NL +G+G GE +  + DL+    ++ A   
Sbjct: 534 DLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPV 593

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           D   + L+++  G  F V+  ++IAN RKGK  + + S ++   +  V G  V  +  +R
Sbjct: 594 DPEQEYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGSISRSR 653

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +LLIF I+Q P M++GKGVR+Q    D  + DV  F   EG   +DS  +   +   D  
Sbjct: 654 RLLIFPIEQFPLMAKGKGVRVQKLGADEVVVDVTTFTDEEGF-VLDSGKK--TKHVTDYD 710

Query: 728 GWLGKRGGVGSLVPKGF 744
            W G R G G+++P GF
Sbjct: 711 QWHGNRAGRGAMLPHGF 727


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/808 (31%), Positives = 410/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NPE SI++L+E +  PDFPTGGI +     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHMLKNPEASIDELMEIVPAPDFPTGGI-IYGINGVKDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L+HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIQVFLSHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS---- 422
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P   K  ++ R      
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSL 419

Query: 423 --------------------------------------LTENQVDAILNLRLRSLRKLEE 444
                                                 L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++AE + +  +L   ++    I  E+  +K  F + T LG RR+   ++  
Sbjct: 480 DKIVAEYKEVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQ-TKLGARRS---QIEH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 SSFDLSTEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR  + +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMTLEDGQGVIAMLVAEDEQQSVLTATQNGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   +GD L  A        ++L S 
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA      ++     +   ++ +  L   Q ++   V +   + +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGM-TLEDGQGVIAMLVAEDEQQSVLTATQNGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I EM R
Sbjct: 775 ITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGR 834

Query: 684 GK-GVRLQSYKDG 695
              GV L    +G
Sbjct: 835 ATQGVTLIGLDEG 847


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/791 (33%), Positives = 405/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I N +I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDE+I +I+N   P                     
Sbjct: 364 RTIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+  +        RR+   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVITEELELVQATYGDE-----RRS---EITAAVHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G   + +  +  K++ FS D++  M R
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     +G   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLADEDQVVSLIVPSNQGD-ILTVTQNGYGKRTELEEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGPVVGA 785



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSPEKFIFMATGDGTVKKTSLDQFSNVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        + +       ++ +  L     +V+  V  +   +
Sbjct: 685 DITDGQSDIMLFSKQGKVVRFSEDKVRAMGRTAAGVRGM-KLADEDQVVSLIVPSNQGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E  E     R   G   +KVS      +  +    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERNGPVVGAIQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++ ++ R  +GV L  
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIR 825


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/792 (33%), Positives = 420/792 (53%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +++D VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I++L+EYI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAM-ISGRKGIIDAYKTGRGKIYMRS 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E E   G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++
Sbjct: 245 KAEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ 
Sbjct: 305 IECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  IL+GL +A  NIDEII +IR    P                    
Sbjct: 364 RRTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + LTE Q  AIL+LRL  L  LE  +I  E   LL 
Sbjct: 424 LERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++  +L+S ++    I  E+  VKE F+ +     RRT   E++ A      + +I 
Sbjct: 484 EIAELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLIN 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++          +      +A   K+ D ++  L A+T D IL  ST
Sbjct: 536 QEDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFST 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  ++ L  N+ I        Y++   + + ++ G  
Sbjct: 596 RGRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVKEYEADKFVFMATADGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + + +E+ +  V    G + + +  +  K++ F+  Q+  M 
Sbjct: 656 KKTPLTDFSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     +      +     +G   +      Y +           R   G +  
Sbjct: 716 RTAAGVRGIKLAESDNVVSLIVPHNDGD-VLTVTENGYGKRTELEEYPAKSRATQGVVSI 774

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 775 KVSERNGSVVGA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E +    + +  G ++        +  S  + A++ +  D+L   
Sbjct: 626 EENERITAILPVKEYEADKFVFMATADGTVKKTPLTDFSRPRSAGIIAVNLRNEDTLIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + I+L S  GK      G + +       ++  I L  + ++V+  V  +   +
Sbjct: 686 DITDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAAGVRG-IKLAESDNVVSLIVPHNDGDV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E  E  A +R   G   +KVS      +  V  + GD   ++     L
Sbjct: 745 LTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    ++  +  +      +    I+ A 
Sbjct: 805 VRTRVREVSRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDDIIEDAE 852


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 413/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 RAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +I+N   P                     
Sbjct: 364 RTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        + +   + + +  G   
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G+  + +  ++ K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSDRNGPVVGA 785



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        +         ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGM-KLPEDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/807 (30%), Positives = 404/807 (50%), Gaps = 70/807 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SIE+L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGI-IYGINGVREGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +L+ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQ-PKLCNLKQLLEIFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------- 413
           EV+ RR+ F ++    R  +L+GL +A  NIDE I  I+N   P                
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSV 419

Query: 414 ---------------KPVMVSR-------------FSLTENQVDAILNLRLRSLRKLEEY 445
                          +                   + L+++Q   IL +RL+ L  LE+ 
Sbjct: 420 VREMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQD 479

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E  +++A+   +  +L    +    I  E+  V++ F + + +G RR+    V   
Sbjct: 480 KIVGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQ-SKIGVRRSV---VEHN 535

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
            +    + +I    + V +S+ G+I+S         K       A   K+ D +     A
Sbjct: 536 VQELGTEDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIA 595

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV-------Y 608
           +T D +L  S  G+ Y L    +  G     G+ I  +  L  ++ I            +
Sbjct: 596 NTHDWMLCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSF 655

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
            +   + + +++G        +     + G   + +   + +       G H V +  + 
Sbjct: 656 PADHYIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDG 715

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            K + F  + +  + R  +GVR  +  +G     +     E  + + +    Y +  + L
Sbjct: 716 GKAVRFDEEDVRPLGRQARGVRGMALDEGQSVIAMLVAEDETQSVLTATENGYGKRTSIL 775

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+GK +++
Sbjct: 776 EYTRHGRGTKGMIAIQQTERNGKVVAA 802



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + + RG ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPADHYIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ +  L+  Q ++   V  D T  +L  +  G      
Sbjct: 715 GGKAVRFDEEDVRPLGRQARGVRGMA-LDEGQSVIAMLVAEDETQSVLTATENGYGKRTS 773

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 774 ILEYTRHGRGTKGMIAIQQTERNGKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGR 833

Query: 684 GK-GVRLQSYKDGG 696
              GV L +  +G 
Sbjct: 834 ATQGVTLIALDEGA 847


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/791 (30%), Positives = 405/791 (51%), Gaps = 67/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP  +IE+L+E +  PDFPT GI +     + ++YR GRG   +RAR   
Sbjct: 190 VLDACLHLLRNPGATIEELMERVPAPDFPTAGI-IYGTSGVRDAYRTGRGRVVMRARCHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  ++  +L+HRRE++ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  +L+GL +A  N+D +I +I+    P PV   R                 
Sbjct: 368 FDLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSR 426

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL+ L  LE+ +I SE  +++ +
Sbjct: 427 VEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVMEQ 486

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  ++  F  +      R +  EV+  D     + +I  
Sbjct: 487 IADLLDILAKPERMTEIITTEMSALRAEFGDA------RRSHIEVNAYD--IDVEDLITP 538

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + + V IS+ G+++S         +       A   KE D ++    A+T D +L  S  
Sbjct: 539 QDLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNR 598

Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +        GRG  G+ +  L  L   + I T      +D    + + +++G   
Sbjct: 599 GRVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGTVK 658

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               +        G   + +  ++ +       G H V +  +  K + F    +  M R
Sbjct: 659 KTPLTAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMGR 718

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR    +       +     E  + + +    + +  +        RG  G +  +
Sbjct: 719 EARGVRGMQLEADQSVIALLVAEDETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQ 778

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 779 TSERNGKVVAA 789



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 515 IEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +++    + + RG ++           +  + A+   + D L  A        ++L S 
Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSD 701

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ +  L  +Q ++   V  D T  +L  +  G      
Sbjct: 702 AGKAVRFDEADVRPMGREARGVRGM-QLEADQSVIALLVAEDETQSVLTATENGFGKRTS 760

Query: 628 ESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+    +   +  T D + ++ +   L+   +++I EM R
Sbjct: 761 ITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGR 820

Query: 684 GK-GVRLQSYK 693
              GV L +  
Sbjct: 821 ATQGVTLIALD 831


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 411/760 (54%), Gaps = 31/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT GII+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D   
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + ++++  ++  + ++  F +NM  L     P+V+ L  IL+ ++  + +V
Sbjct: 301 IVIEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDN-RPEVLNLKQILQHYIKFQEQV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL IA  +IDE+I++IR     +      + +F L+E Q 
Sbjct: 360 IRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+L+ L  LE  +I+ E + L+    ++ S+L    +    I  E+ E+K  +  
Sbjct: 420 QAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  E +  D     + +I++E + + +++ G+I+          K     +
Sbjct: 478 ----GDERKTAIERAENDIDI--EDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A+  KE D ++      T + IL  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDP 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +D    L++ + KG              + G   + ++ ++++  V  
Sbjct: 592 NEKIQAVISIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRI 651

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + +V      + F+   +  + R   GV+  + K+     V+  ++  +    +
Sbjct: 652 TKGDDDIIIVTNKGLAIRFNEVDVRPLGRNALGVKGITLKED--DFVVGMEVPNQESDVL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +        RGG G +  K   ++GK + 
Sbjct: 710 VVSENGFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVG 749



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 74/189 (39%), Gaps = 12/189 (6%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            K +     ++ +       ++  D+    +     + I + ++N+G         +R L
Sbjct: 620 KKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIII-VTNKGLAIRFNEVDVRPL 678

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +++ +  +  KE D +      +    +L++S +G       G        G+ +   
Sbjct: 679 GRNALGVKGITLKEDDFVVGMEVPNQESDVLVVSENGFGKRTHVGEYKCQHRGGKGLITY 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
              +    +V   + +   +L+++ +  ++  +  S+I   +R   G T ++ + +EK+ 
Sbjct: 739 KVSDKTGKLVGVRMVEDGDELMLI-NNLHSIRINVSDISTTSRNAMGVTLMRNNGDEKVL 797

Query: 652 LVVKVTGDH 660
            + K+  D 
Sbjct: 798 ALAKINKDD 806


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 411/760 (54%), Gaps = 31/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL     
Sbjct: 2   LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F  RY ++ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +++ + ++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    LIDNPE +I +L+  I GPDFPT GII+  +  I  +Y  GRG   
Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E    G   I++TEIPYQV K+RL+E IA+L+  KRI  + D+RDES  D   
Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + ++++  ++  + ++  F +NM  L     P+V+ L  IL+ ++  + +V
Sbjct: 301 IVIEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDN-RPEVLNLKQILQHYIKFQEQV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL IA  +IDE+I++IR     +      + +F L+E Q 
Sbjct: 360 IRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+L+ L  LE  +I+ E + L+    ++ S+L    +    I  E+ E+K  +  
Sbjct: 420 QAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILADENKILAIIRDELNEIKAKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  E +  D     + +I++E + + +++ G+I+          K     +
Sbjct: 478 ----GDERKTAIERAENDIDI--EDLIQEENVVITLTHAGYIKRINADTYTSQKRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A+  KE D ++      T + IL  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQLDP 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        +D    L++ + KG              + G   + ++ ++++  V  
Sbjct: 592 NEKIQAVISIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSVRI 651

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + +V      + F+   +  + R   GV+  + K+     V+  ++  +    +
Sbjct: 652 TKGDDDIIIVTNKGLAIRFNEVDVRPLGRNALGVKGITLKED--DFVVGMEVPNQESDVL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +  +        RGG G +  K   ++GK + 
Sbjct: 710 VVSENGFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVG 749



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 14/215 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +   +A +     ++E   V+ + +G I+              L A++  + D L   
Sbjct: 590 DPNEKIQAVISIKEFDEESFLVMCTKKGIIKKTVVGMYKNIRKSGLIAINLNDDDELVSV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D I++++  G A      ++     +   ++  I L  +  +V   V +    +
Sbjct: 650 RITKGDDDIIIVTNKGLAIRFNEVDVRPLGRNALGVKG-ITLKEDDFVVGMEVPNQESDV 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKL 670
           LVVS  G        E     R GK  +     +K   +  V  V  GD + ++      
Sbjct: 709 LVVSENGFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVGVRMVEDGDELMLINNLGIA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           +  ++  I   SR   GV L   ++ G   V+   
Sbjct: 769 IRINVSDISTTSRNAMGVTLM--RNNGDEKVLALA 801



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 75/189 (39%), Gaps = 11/189 (5%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            K +     ++ +       ++  D+    +     + I + ++N+G         +R L
Sbjct: 620 KKTVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIII-VTNKGLAIRFNEVDVRPL 678

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +++ +  +  KE D +      +    +L++S +G       G        G+ +   
Sbjct: 679 GRNALGVKGITLKEDDFVVGMEVPNQESDVLVVSENGFGKRTHVGEYKCQHRGGKGLITY 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
              +    +V   + +   +L+++++ G A  +  S+I   +R   G T ++ + +EK+ 
Sbjct: 739 KVSDKTGKLVGVRMVEDGDELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVL 798

Query: 652 LVVKVTGDH 660
            + K+  D 
Sbjct: 799 ALAKINKDD 807


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 414/756 (54%), Gaps = 28/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + VK  ++   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+++M+++G+     +KK
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VI K HPHGD SVYD++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTEA
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++ ++++ +DF+  ++ E+ EPVV P++FP+LL NGT+GIAVGMAT+IP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LA ++NPEI +  L+E+I GPD PTG +I+   + I  +Y  G G   +R+
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALIL-GTKGIRNAYETGNGSIMMRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E   G + I+VTEIPYQV + RLIEKIAEL+  KR+  + D+R+ES  +   ++ 
Sbjct: 244 KCEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++P +++ ++F L+ ++  + +NM  L  G+ P+V+ L  I+  ++ H+ EV+ R
Sbjct: 304 ELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQ-PKVLNLKEIIAAYIKHQVEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+G  IA  +ID IIAIIR   N+++    ++S FS +E Q  AI
Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I+ E  NL+     +  +L +  +    I  E+ EV         
Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEVMIKHGD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RRT     S  D     + +I +E + + ++N G+I+                +  +
Sbjct: 480 --DRRTEIVRGS--DFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              + D +K  L   T D +L  +  GK Y   A  +        G  I  +I++  +++
Sbjct: 536 GTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPIVNIIEIAQDEE 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        ++    L   +  G       S        G   L +  ++++  V K TG
Sbjct: 596 ISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALSLREDDELIGVRKTTG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + + +     KL+ F  DQ+  M R   GVR  + ++G ++ V    + E    +  + 
Sbjct: 656 SNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVA-VGMEIVTEDQEILIVSE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +           RGG G        ++G  ++
Sbjct: 715 KGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVA 750



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 490 TDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LS 541
           T  G       E+++ ++  A +      +       +  G ++     +        L 
Sbjct: 578 TAKGLPIVNIIEIAQDEEISAIIPVKEFNENEFLFFATRTGVVKRTTLSAFGNIRTNGLI 637

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           AL  +E D L        ++ I++ S+ GK        + S       ++  I+L   + 
Sbjct: 638 ALSLREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRG-INLEEGEV 696

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG 658
            V   +     ++L+VS KG       SE    +R GK    ++  +K   +  +  VTG
Sbjct: 697 AVGMEIVTEDQEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKNGSLVAMKTVTG 756

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           +  + +V     ++   I QI +  R   GV L    D      +  
Sbjct: 757 EEDLLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVAL 803


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/808 (30%), Positives = 407/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 13  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 72

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 73  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 133 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ ++++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 193 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGKV 251

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 252 VMRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 312 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIEVFLQHRR 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 371 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 430

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q   IL +RL+ L  LE+
Sbjct: 431 VREMLTRTRADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQ 490

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L    +    I  E+  +++ F + + +G RR+T      
Sbjct: 491 DKIVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQ-SKVGARRSTI---EH 546

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 547 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFI 606

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + SG     G  I  +  L   + I            
Sbjct: 607 ANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRT 666

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 667 FPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 726

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 727 GGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 786

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 787 VEYTRHGRGTKGMIAIQQSERNGKVVAA 814



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + ++ G ++              + A++  +GD L  A        ++L S
Sbjct: 666 TFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFS 725

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIV 626
             GKA      ++         ++ ++ L   Q ++   V  D    +L  +  G     
Sbjct: 726 DGGKAVRFDENDVRPLGRQARGVRGMM-LEDGQSVIAMLVAEDENQSVLTATENGYGKRT 784

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
              E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ 
Sbjct: 785 SIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELG 844

Query: 683 RGK-GVRLQSYKDGG 696
           R   GV L S  +G 
Sbjct: 845 RATQGVTLISLDEGA 859


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/799 (33%), Positives = 410/799 (51%), Gaps = 66/799 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S + +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+
Sbjct: 3   SMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDW 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA
Sbjct: 63  NKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  LA ID+  ISIE L+++I GPDFPT  I +  R  I E+YR GRG
Sbjct: 183 TNIPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAI-INGRRGIQEAYRTGRG 241

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +
Sbjct: 242 KIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDK 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  ++ H
Sbjct: 302 DGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDIISAFVCH 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  IL+ L +A  NID II +IR+   P              
Sbjct: 361 RREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWEL 420

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                        ++ LTE Q  AIL+LRL+ L  LE  ++  E
Sbjct: 421 GNVASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 480

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              LL    ++  +L S ++    I  E+  +K  ++ +     RRT   E++       
Sbjct: 481 YRELLTLIGELLFILESPERLMEVIREELLAIKAQYNDA-----RRT---ELTENTADIN 532

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S++G+++          +      SA   KE D ++  L A+T D 
Sbjct: 533 IEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDT 592

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  S+ G+ Y +    L   S    G  I  L+ L  ++ I        Y+    + + 
Sbjct: 593 ILCFSSRGRLYWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGLYVFMA 652

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G        +       G   + ++  +++  V    G + V +     K++ F  D
Sbjct: 653 TASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEED 712

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRG 734
            +  M R   GVR       G   V+   I  G    +      Y +   +    +  R 
Sbjct: 713 AVRAMGRTATGVRGIKL--NGKDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRA 770

Query: 735 GVGSLVPKGFPRSGKFLSS 753
             G +  K   R+G  + +
Sbjct: 771 TQGVISIKVSERNGNVVGA 789



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 16/231 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E      + +  G ++        +  S  + A++  +GD L   
Sbjct: 629 EQDERITAILPVREYEDGLYVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + +       ++  I LN    +V+  +     ++
Sbjct: 689 DLTDGSNEVMLFSAEGKVVRFEEDAVRAMGRTATGVRG-IKLNGKDKVVSLIIPRGEGEI 747

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      E+E    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 748 LTVTENGYGKRTAENEYPIKSRATQGVISIKVSERNGNVVGAIQVEPTDQIMMITDAGTL 807

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +     G+  V   +  E     +  G
Sbjct: 808 VRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDELVAEGGG 858


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+  +K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDE-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S +GK        + S       ++  I+L     +V+  +      +
Sbjct: 686 DLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE    +R  K  + +   E+    +  V     D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQVDAADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/761 (35%), Positives = 425/761 (55%), Gaps = 34/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +K
Sbjct: 6   ESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +R
Sbjct: 186 HNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E  G G   IVVTEIP+QV K+R+IEKIA+L+  K+I  + D+RDE++      V
Sbjct: 245 AKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGVRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +  +++ +++  + ++T F +NM  L  G  PQ++ L   L  +L H++EV+
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPQLINLKQALYHYLEHQKEVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++    R  IL+GL IA  +IDEII IIR  D  K  M    SRF+L+E Q  
Sbjct: 364 RRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSERQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F   
Sbjct: 424 AILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G  R T  ++   D+    + +I +E I + +S+  +I+                + 
Sbjct: 481 ---GDERRTEIQLGGIDQ-LEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQ 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L+ +
Sbjct: 537 GMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELDQD 596

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T             L+ V+ KG       S      R GK  +K   ++++  V  
Sbjct: 597 EVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG---LT 710
             GD H+ +      L+ F    +  MSR   GV+    +DG   +VI   + +      
Sbjct: 657 TDGDKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDG--DEVIGLDVADDDNKDE 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 715 ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V ++ +G I+     +          A+ F++ D L
Sbjct: 592 ELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ +           ++ +       ++  I L    +++   V D  
Sbjct: 652 IAVRLTDGDKHILIGTAQASLIRFKETDVRAMSRIAAGVKG-IRLRDGDEVIGLDVADDD 710

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVG 665
            K  +LVV+ KG        +   + R G         E   ++  +  V GD  + VV 
Sbjct: 711 NKDEILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVT 770

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++   +  I    R  +GVRL    D      + 
Sbjct: 771 NQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVA 808



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAH--TTDRILLLSTDG--KAYTLPAGNLLSGRG 585
           +R++   +  +  +  ++GD +     A     D IL+++  G  K  ++    L +  G
Sbjct: 680 VRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNKDEILVVTEKGYGKRTSIEDYRLSNRGG 739

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G     L     N  +V     +    L+VV+++G    +E S I  N R  +G   ++
Sbjct: 740 MGVKTAKLT--ERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIR 797

Query: 644 VSSEEKMKLVVKVTGD 659
           +  E+ +  V KV  +
Sbjct: 798 LDDEQYVSTVAKVKKE 813


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 407/761 (53%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID P+ +   L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + +    L  G+ P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVDGQ-PRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+   +   + R  IL+GL IA  +ID +I +IR     D+ +  ++  F+LTE Q
Sbjct: 361 VIVRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT              + +I +E + + +++RG+I+          +     
Sbjct: 481 D-----DRRTKIV---AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +   S    G A+  LI++ 
Sbjct: 533 ITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIG 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 QDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFGHIRRGGLIALSLDPGDELVAVQ 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-W 711
              G   V ++    + + F + ++  M R  +GV     ++G   +V+  ++ +     
Sbjct: 653 LTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMGIRLEEG--DEVVGMEVADDEAHL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    R Y +           RGG G        R+G+   
Sbjct: 711 LVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAG 751



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSL 551
              +  +       +   E   + ++ + RG ++              L AL    GD L
Sbjct: 590 EIGQDEQVTAVIPVRDFGEDRDL-LMCTRRGVVKRTALAEFGHIRRGGLIALSLDPGDEL 648

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LLL+  G+A   P   + +       +   I L    ++V   V D  
Sbjct: 649 VAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTMGRTARGVMG-IRLEEGDEVVGMEVADDE 707

Query: 612 CKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV--TGDHVAVVGEN 667
             LLV++ +G        E  A  R  KG   + +++        +V   G+ V ++ + 
Sbjct: 708 AHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARNGQVAGFEVVRPGEEVMLISQG 767

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             +L   +DQ+    R   GV +   + G     +      G
Sbjct: 768 GIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVAQRG 809


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/810 (30%), Positives = 407/810 (50%), Gaps = 63/810 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     S       +    +SL   ++  +L YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MRCVPDSMDQDQFAKETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+   +   + KSAR+VG+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 61  MHELNNVWNRPYLKSARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE R+ ++A  ++  +++D VDF   Y+   SEP V P+K PNLL NG+
Sbjct: 121 VDGDPPAAMRYTEIRLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAV MAT+IP HN+ E+  A L L++NP+ +I++L+E I  PDFPTG + +     + 
Sbjct: 181 TGIAVAMATNIPPHNLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGAL-IYGVAGVR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E YR GRG   +RA+   E++ +      I+V EIPYQV K+ L +KIAEL+  K+I  +
Sbjct: 240 EGYRTGRGRVVMRAKTHFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES +    V+    R  + ++++ ++F L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 300 SDIRDESDKQGMRVVIELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQ-PRLLNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KP 415
            +L+ +LAHRREV+ RR+ + +     R  +L+GL +A +N+DE+I +I++   P   K 
Sbjct: 359 QVLEAFLAHRREVVTRRTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKE 418

Query: 416 VMVSR-------------------------------------FSLTENQVDAILNLRLRS 438
            +++R                                     + L+E Q   IL +RL+ 
Sbjct: 419 RLLARTWAAGIAAEMVERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQR 478

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE+ +I +E   ++     +  +L    +    I  E+  V E F         R +
Sbjct: 479 LTGLEQEKIVTEYREVVDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEK--DPRRS 536

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDS 550
             E++ ++     + +I  + + V +SN G+I+        S +       A   K+ D 
Sbjct: 537 QIELNASEIDI--EDLITPQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDW 594

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +     A+T D IL  S  G+ Y L    +   S    G  I  +  L  N+ I      
Sbjct: 595 VDQLFIANTHDTILCFSDRGRVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPI 654

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVV 664
             +D    + + +S G       S+     + G   + +   + +       G+H V + 
Sbjct: 655 KTFDDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLF 714

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +  K + FS   +  M R  +GVR  + ++G     +     E  + + +    Y +  
Sbjct: 715 SDAGKAVRFSEGDVRAMGRTARGVRGMALEEGQKVIAMLVADDERRSVLTATENGYGKRT 774

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      RG  G +  +   R+G+ +++
Sbjct: 775 PLIEHTRHGRGTKGMIAIQSSERNGRMVAA 804



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +      L     + E    + ++ G ++              + A+   EGD L  A  
Sbjct: 645 NEKITVVLPIKTFDDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAV 704

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LL 615
                 ++L S  GKA     G++ +       ++ +  L   Q ++   V D   + +L
Sbjct: 705 TDGEHDVMLFSDAGKAVRFSEGDVRAMGRTARGVRGMA-LEEGQKVIAMLVADDERRSVL 763

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLL 671
             +  G        E   + R  K  + + S E+    +  ++   GD + ++     L+
Sbjct: 764 TATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERNGRMVAAILVEEGDEIMLITTGGVLV 823

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
              +D+I EM R   GV L   ++G     +  V+     E L  +  +   
Sbjct: 824 RTRVDEIREMGRATQGVTLIGVEEGDTLSRVQRVVGSDSPEVLAAVGESADG 875


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/808 (31%), Positives = 409/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 19  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 79  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG++GIAVGMAT+
Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPT GI +   + + + YR GRG  
Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGI-IYGIQGVKDGYRTGRGKV 257

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 258 VMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 318 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKELIEVFLQHRR 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 377 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 436

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q   IL +RL+ L  LE+
Sbjct: 437 VREMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQ 496

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L    +    I  E+  +++ F + T LG RR+T      
Sbjct: 497 DKIVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQ-TRLGARRSTI---EH 552

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 553 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 612

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 613 ANTHDYILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRS 672

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G+H V +  +
Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSD 732

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           + K + F  + +  M R  +GV+    +DG     +     E  + + +    Y +  + 
Sbjct: 733 SGKAVRFDENDVRPMGRNARGVKGMQLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 792

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+G+ +++
Sbjct: 793 TEYTRHGRGTKGMIAIQQSERNGRVVAA 820



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSD 732

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++     +   ++ +  L   Q ++   V  D    +L  +  G      
Sbjct: 733 SGKAVRFDENDVRPMGRNARGVKGM-QLEDGQSVIAMLVAEDENQSVLTATENGYGKRTS 791

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 792 ITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGR 851

Query: 684 GK-GVRLQSYKDGG 696
              GV L S  +G 
Sbjct: 852 ATQGVTLISLDEGA 865


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 401/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD++VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------- 418
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFLADKYVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/803 (30%), Positives = 407/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +   ++SL   + + YL YA+S I  RA+PD+RDG KPVHRR++  M EM   +   + K
Sbjct: 6   KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNRPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A+ +L  +D++ +DF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   +L L+ +P+ +I++L++ I  PDFPTGG+ +     + E YR GRG   +RA
Sbjct: 186 NLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGL-IYGVTGVREGYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   EE GR G   I++ E+PYQV K  L+E+IAE +  K++  + DIRDES +    V+
Sbjct: 245 RTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   ++++ ++F  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREV+ 
Sbjct: 305 IELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NID+ IAIIR    P   +  +++R          
Sbjct: 364 RRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVRSM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+E Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRILN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  +++ +  ++  +L   ++    I  E+  V   +++     RR     E+       
Sbjct: 484 EYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRS----EIELNASDL 539

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+I+S         K       A   KE D +     A+T D
Sbjct: 540 ETEDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L   + I            +    
Sbjct: 600 YILCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S+G       ++     + G   + +   + +       G+H V +  +  K +
Sbjct: 660 YIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GV+  + +D      +     E  + + +    + +         
Sbjct: 720 RFDENDVRPMGRTARGVKGMNLEDEQKVIALLVAGDENQSVLTATENGFGKRTPIAEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQTSERNGKVVAA 802



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 515 IEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             +     + +++G ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPENHYIFMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ + +L   Q ++   V  D    +L  +  G      
Sbjct: 715 AGKAVRFDENDVRPMGRTARGVKGM-NLEDEQKVIALLVAGDENQSVLTATENGFGKRTP 773

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R
Sbjct: 774 IAEYTRHGRGTKGMIAIQTSERNGKVVAATLVSENDEIMLITTGGVLIRTRVSEIREMGR 833

Query: 684 GK-GVRLQSYKDG 695
              GV L S ++G
Sbjct: 834 ATQGVTLISIEEG 846


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE 
Sbjct: 426 RAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+  +K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDE-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S +GK        + S       ++  I+L     +V+  +      +
Sbjct: 686 DLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE    +R  K  + +   E+    +  V     D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQVDAADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/790 (34%), Positives = 404/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMTLKEILAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   + +    Y +           R   G +  K 
Sbjct: 718 ATGVRGIRLGEGDSVVSLIVPRGEGA-ILTATQNGYGKRTAVEEYPTKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TDRNGPVVGA 786



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  +  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        +         ++  I L     +V+  V      +
Sbjct: 686 DLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTATGVRG-IRLGEGDSVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  +  G        E    +R  K  + +   ++    +  V     D + ++ +   L
Sbjct: 745 LTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/731 (50%), Positives = 507/731 (69%), Gaps = 11/731 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+  AA +K 
Sbjct: 12  RIVDEPMGEALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+YD+LVRLAQ F QRYPL+ GQGNFGNIDGD+AAA RYTE +
Sbjct: 72  AKVVGEVMGGYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNAAAMRYTECK 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T  + L+++G+D+D+VDFR TY+++D EP V P+ FPNLLANG+SGIAVGMATSIP HN
Sbjct: 132 LTAASVLLMEGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSSGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V E+ +A LAL+D PE +  +L E + GPDFPTGG+ VE   SI+++Y  GRGG R+RAR
Sbjct: 192 VGELIDACLALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E + RG + IV+TE+PYQVQKS+LIE +AELI  K+ PLL D+RDESAED+R+V+ P
Sbjct: 252 WEREPLERGGYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDVRDESAEDIRVVIDP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++D D LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HRREVL RR
Sbjct: 312 KSRNIDADSLMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACLQAFLDHRREVLNRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R++ +++R+ +L+GL I +LN+DE+I I+R E++PK V+++RF L+E Q D IL+ R
Sbjct: 372 SAWRIERVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAVLIARFGLSETQADFILDTR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L ++EE  I++E   L  E   + SL +S  +QW +I  E+   ++          R
Sbjct: 432 LRQLARIEEMTIENEYKALSEELASLQSLTSSPAKQWKKIGQELAATRKALISP-----R 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT  E   A      +A I +E ITV++S RGWIR++K    D S L FKEGD+L   +
Sbjct: 487 RTTIAEAVDASAFVPAEAFIPREAITVILSERGWIRAVKGKVEDPSELKFKEGDALGFLV 546

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+++L  +  IV    +    KLL
Sbjct: 547 PAFTTDKLLVAASDGRVFTVGADKLASGRGHGEPLRLMVELEESAGIVAVLAHQPGAKLL 606

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S  G  FI  E E++A  R GK  L       +   ++VTGDHV  +GEN K LIF  
Sbjct: 607 IASKAGYGFIAPEDELLAQKRGGKQVLN----GDLLAAIRVTGDHVVTIGENLKTLIFKA 662

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           D++PEM RGKGV+LQS+K GG++D+  F    G  W+D  GR   R+  D   WLGKR G
Sbjct: 663 DELPEMGRGKGVKLQSFKQGGLTDIALFDGAHGPEWVDGGGR--RRNWPDWKDWLGKRAG 720

Query: 736 VGSLVPKGFPR 746
            G + P+G  +
Sbjct: 721 AGRMGPRGLRK 731


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 403/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIDDENISVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P++M L  IL+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKIMALKEILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL I+  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILASAERLMEVIREELEAMRDQFGD-----DRRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALQEFSRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAMGRS 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIKLAEGDKVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVVGA 786



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ +E D L   
Sbjct: 626 EANERITAILPVREYTEGFNIFMATADGTVKKTALQEFSRPRSAGIIAINLREDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              + +D  +L S  GK        +   R  G +   +  I L     +V+  V     
Sbjct: 686 ALTNGSDETMLFSAAGKVVRFAEAAV---RAMGRSASGVRGIKLAEGDKVVSLIVPREEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            +L V+  G       SE    +R   G   +KV+      +  V     D + ++ +  
Sbjct: 743 AILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVVGAVQVDDSDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGS 854


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/741 (50%), Positives = 531/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +D+D VDFR TY++ D EP++ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P   I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  E +  G++ IVVTEIPYQVQKS+LIE++A L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EIL GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE++I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEHEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQMQFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A + KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGDRRTSFEEVTLTNQVVDITAFVTKEPITIICSKMGWVRSLKGHNTDLSNIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    V+   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNIPKGKGTGESIKLLVDIGNN-DITNILVHKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + V         + V GD VA +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVIAQTKTGKQVMNVPDGHACIACLHVAGDAVACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F++D+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNVDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLCW---NNNGKVKLEKNIIAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           +RG  G L P GFP++ +F S
Sbjct: 717 QRGSTGKLPPMGFPKNNRFSS 737


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/786 (33%), Positives = 413/786 (52%), Gaps = 58/786 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL   A +KKS
Sbjct: 7   RIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ +D+D VDF+D ++    EPVV P+  PNL+ NG  GIAVGMAT IP HN
Sbjct: 127 LTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A+IDNP+IS+++LL+++  PDFPTGGI +     + E+Y  GRG   +RAR
Sbjct: 187 LGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGI-IYGYSGVKEAYATGRGRILIRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   +V+TEIPYQV KS LIEKIA L+  +RI  + DIRDES  +   V+  
Sbjct: 246 IHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLRVVLE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P ++   ++  +  +  F +NM  L  G  P+ + L  +++ +L HR EV+ RR
Sbjct: 306 LRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNG-RPRTLTLKELMRHYLDHRHEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++  + R  IL+GL IA  ++D +I IIR    P                      
Sbjct: 365 TRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPEQRE 424

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                    S F+LTE Q +AIL LRL  L  LE  +++ E   LL E E++ S+L S  
Sbjct: 425 RLGLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILASEP 484

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +W  I  E+ E+K+ ++ +     RRT        D A   + +IE E + V +S++G 
Sbjct: 485 LRWQIIREELLELKQKYADA-----RRTEIDYAGGGDFAI--EDLIEDEQVVVTLSHQGL 537

Query: 530 IR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+              V + A   +E D ++        D +L  +  G+ Y L   ++ 
Sbjct: 538 IKRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIP 597

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAF----------VYDSTCKLLVVSSKGNAFIVEES 629
             S    G +I+ LI +  +  +               +  T  +L+ + +G     E  
Sbjct: 598 EGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELE 657

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                   G   +  +  +++   V   G  HV +     +++ F    +  M R  +GV
Sbjct: 658 AFSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGV 717

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R  + + G  +  ++          +  +   Y +        + +RGG G    K  PR
Sbjct: 718 RGIALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777

Query: 747 SGKFLS 752
           +G+ ++
Sbjct: 778 TGRLIA 783



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 90/238 (37%), Gaps = 24/238 (10%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA-----TLQQAMIEKE----PITVVISNRGWIRSL---- 533
              T LGR      +++  D+        ++     E       ++ + +G ++      
Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +  +  + A+ F EGD L  A+       +LL S+ G+       ++     +   ++
Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGVR 718

Query: 592 LLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE 647
             I L   + +V            +L +S+ G        E   + R GK    +K++  
Sbjct: 719 G-IALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777

Query: 648 -EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
             ++  +  V   D + ++ +N  ++   +  I  M R  +GVRL   K G  I+DV 
Sbjct: 778 TGRLIAIKAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVT 835


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/803 (32%), Positives = 416/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ +    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIA 418

Query: 417 -------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                             ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RPWDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHE 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E++  +L S ++    I  E+  ++E+++ +     RRT   E++  
Sbjct: 479 KLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDA-----RRT---EITEN 530

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+++          +      SA   KE D ++  L A
Sbjct: 531 TADINIEDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 711 RFAEDAVRPMGRTATGVRGIRLADEDKVVSLIIPRGEGH-ILTVTENGYGKRTAEQEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGNVVGA 792



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 632 EQDERITAILPVREYEEGYYVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGV 691

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              + ++ ++L S  GK        +         ++  I L     +V+  +      +
Sbjct: 692 DLTNGSNEVMLFSAQGKVVRFAEDAVRPMGRTATGVRG-IRLADEDKVVSLIIPRGEGHI 750

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      E E    +R   G   +KVS      +  +     D + ++     L
Sbjct: 751 LTVTENGYGKRTAEQEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITNAGTL 810

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    ++  +  +      E     D AG
Sbjct: 811 VRTRVSEVSVVGRNTQGVTLIRTAEEEKVVGLQRVAETEEDENSDEAG 858


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/745 (50%), Positives = 522/745 (70%), Gaps = 12/745 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +    L  AL +RYLAYALSTI  RA+PD+RDG KPVHRR++HAM+ M L+     +K
Sbjct: 15  DRILDEPLSEALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHAMNNMRLNPEGGARK 74

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+G  HPHGDQS+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE 
Sbjct: 75  CAKVVGEVMGNFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGNIDGDSAAAMRYTEC 134

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +MT  A L+L G+DEDAVDF+ +Y+ +D EPVV PS FPNLLANG+SGIAVGMATSIP H
Sbjct: 135 KMTAAAVLLLDGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ +A L L+  PE +  ++LE + GPDFPTGG+IVESRES++E+Y  GRGG R RA
Sbjct: 195 NPAELIDACLLLLSKPEATTAEILERVPGPDFPTGGVIVESRESLLETYETGRGGVRTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL 
Sbjct: 255 KWEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLE 314

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRR+VL R
Sbjct: 315 PKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALIAFLAHRRDVLTR 374

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R+  R+  I+ R+ IL GLLIAYLN+DE+I I+R ED+PK  +++ F+L++ Q DAILN 
Sbjct: 375 RARNRLSKIEARLHILDGLLIAYLNLDEVIRIVRYEDEPKQKLMAAFALSDIQADAILNT 434

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L KLEE +I+ E   L+ E++ I ++L S K+QW+ +   +R+V+ +  K      
Sbjct: 435 RLRQLAKLEEMEIRREHAQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLD 494

Query: 495 R---------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +         R+ F +    D     +A+I +EPITV++S+RGWIR+ K    D S L F
Sbjct: 495 KTGRATGVIGRSVFEDAPVVDAEAALEALIVREPITVILSDRGWIRAAKGKVEDPSELKF 554

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           KEGD L   + A TTD++LL ++DG+ +T+   NL S RGHGE ++++I+L+    I+  
Sbjct: 555 KEGDKLGFLVPAETTDKLLLFTSDGRFFTIGCANLPSARGHGEPVRMMIELDDKVKIIDV 614

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           F + +  K  + S +G  F++ E E +AN + GK  L V +       ++  GD +AVVG
Sbjct: 615 FPFKAGRKRFLASKQGYGFLMPEEEALANRKAGKQVLTVDA-AGAAFCLEAVGDQLAVVG 673

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +N K+LIF ++++PEM RGKGV+LQSY++GG+ D I F    G  WID+AGR   R   +
Sbjct: 674 DNGKILIFPLEELPEMPRGKGVKLQSYREGGLRDAISFNADVGAFWIDTAGR--RRDWVE 731

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
              W+GKR G G L PKGFP S +F
Sbjct: 732 WRDWIGKRAGAGKLSPKGFPTSKRF 756


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/759 (34%), Positives = 410/759 (54%), Gaps = 35/759 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  +V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR + AM +M  D+   +KKS
Sbjct: 6   NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  +D++ V +   Y++   EP+V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 126 MEQLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A+IDNP+++ E+L+E I GPDFPTGG  +  RE I+++Y  GRG  ++RA+
Sbjct: 186 LSEVIDGIVAIIDNPQLTFEELVELIPGPDFPTGG-FIYGREGIMKAYSTGRGIIQMRAK 244

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +   V+ 
Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +++  ++  + M++ F + M  +     P+V+ L   +  ++ HR+E++ R
Sbjct: 305 ELKKDENPTIILNHLYKQTQMQSSFGIIMLAIVN-SRPRVLTLRETIDFFIEHRKEIVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA  N+DE+IA+I+      + K  ++ RF L++ Q  AI
Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  EL  +L    ++  +L S  +    I  E+ E+K+ F     
Sbjct: 424 LDMRLHRLTGLEREKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKFGDK-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E+         +  I +E + V IS+ G+I+          +      + +
Sbjct: 482 ---RRS---EIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             KE D ++    A T D ++  +  GK Y L    +        G+AI  L++L  N+ 
Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I T      +     +++ +  G        E       G   + +   +K+  V    G
Sbjct: 596 ITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVALTDG 655

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE----GLTWI 712
              V +   N K + F  + +  + R  +GVR  + +  G   VI  +I        T  
Sbjct: 656 KQDVLLASANGKAIRFKEEDVRTVGRVSRGVRGMTLE--GEDVVIGMEILNENFTDSTIF 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 Y +           RGG G +  K   R+G  +
Sbjct: 714 TVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVV 752



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 16/220 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
            +      L       +   ++ +  G ++              + A++  EGD L    
Sbjct: 592 ANEKITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLDEGDKLITVA 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TC 612
                  +LL S +GKA      ++ +       ++ +  L     ++   + +      
Sbjct: 652 LTDGKQDVLLASANGKAIRFKEEDVRTVGRVSRGVRGM-TLEGEDVVIGMEILNENFTDS 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +  V+  G     E SE  + +R GK  + + + E+   VV +      + + ++ +  
Sbjct: 711 TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQG 770

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           K+L   +     + R  +GVRL   K+     V   ++ E
Sbjct: 771 KILRVPVAGFSIIGRNTQGVRLM-VKEENERVVAVARLAE 809


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/790 (34%), Positives = 405/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  IS+E L+ YI GPDFPT  I +  +  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAI-INGKRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVAL-HQGQPKLMTLKEILAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL +A +NID II +IR+   P                      
Sbjct: 366 TIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  +KE ++      +RRT   E++        + +I +E
Sbjct: 486 AALLFILRSPERLMEVIREELEAIKEQYND-----QRRT---EITHNSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWLKVYQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  + +D      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGINLQDDDRVVSLIVPRGEGD-ILTVTENGYGKRTAINDYPTKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 SERNGNVVGA 786



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 80/234 (34%), Gaps = 28/234 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EQNERITAILPVREYEEGLNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + +       ++  I+L  +  +V+  V      +
Sbjct: 686 DLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATGVRG-INLQDDDRVVSLIVPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       ++    +R  K  + +     +   +  V   T D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS----------------YKDGGISDVICFKICE 707
           +   + ++  + R  +GV L                   +D  +  V+     E
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDGEE 858


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+  +K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TSLTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVNEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGRHIFMATASGTVKKTSLTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S +GK        + S       ++  I+L     +V+  +      +
Sbjct: 686 DLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R  K  + +   E+    +  V     D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERNGKVVGAVQVDAADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/741 (50%), Positives = 528/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P+  I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 413/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 RAEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +I+N   P                     
Sbjct: 364 RTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        + +   + + +  G   
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G+  + +  ++ K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSDRNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        +         ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGM-KLPEDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/741 (50%), Positives = 530/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F+ RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LID+P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            N RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EIR V+  F  +T 
Sbjct: 421 FNTRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKVVKKEIRTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/804 (31%), Positives = 408/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  ++ R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRSEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + +DG     +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEDGQQVIAMLVAPAETAGEGE 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 847


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/797 (32%), Positives = 415/797 (52%), Gaps = 66/797 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T V   +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  
Sbjct: 2   TGVAREILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG+IDGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  + EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTEVRMARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A +AL+D+PE+ +E L+EY+  PD PTGGII      I +++R GRG  
Sbjct: 182 IPPHNLREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIF-GTAGIHQAFRTGRGRM 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VEE+      IVVTE+PYQV K+RL+EKIAEL+  +R+  + ++RDES ++  
Sbjct: 241 VLRARAEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+T F +N+  L     P+ + L  +L+ ++ HRRE
Sbjct: 301 RIVLELKRGEAGEIVLNNLYRHTQMQTVFGINVVAL-HEGQPRTLNLRQVLEAFIRHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------- 420
           V+ RR+ + ++    R  +L+GL +A  NIDE+IA+I+      + K  +V+R       
Sbjct: 360 VVTRRTIYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVV 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL  L  +E+ +I  E 
Sbjct: 420 TEMLERAGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            NLL    ++  +L+SG++    I  E+  +++ +              E+         
Sbjct: 480 SNLLERIAELIHILDSGERLMEVIREELVAIRDQYGDERK--------TEIREDTAELSL 531

Query: 512 QAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++        + +      SA   K+ D +     A+T D +
Sbjct: 532 EDLISEEDMVVTLSHHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTL 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ GK Y      L   S    G  +  L+ L  ++ I        +D    + + +
Sbjct: 592 LCFSSTGKCYWRKVYELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDEDHFVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G       S        G   +++  ++ +       GD  V ++ +  K L F    
Sbjct: 652 RNGTVKKTPLSHFSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESD 711

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR    + G    VI   I      + +    Y +           RGG+
Sbjct: 712 VRAMGRTAGGVRGIRLESG--QRVIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGM 769

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ + +
Sbjct: 770 GVICIRTTERNGRVVGA 786



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A +     +++    + +  G ++        +  S  + A+  +  D+L  A
Sbjct: 627 EEDERINAVVPVREFDEDHFVFMATRNGTVKKTPLSHFSRPRSSGIIAVELRGDDTLVDA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    ++LLS  GKA      ++ +       ++  I L   Q ++   +      +
Sbjct: 687 EITNGDREVMLLSDAGKALRFHESDVRAMGRTAGGVRG-IRLESGQRVIALLIL-GEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  +  G        +     R G   + + + E+    +  V     D + +V  +  L
Sbjct: 745 LTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGRVVGAVQAAEDDEIMLVSRSGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +   +  +  + R  +GV+L S  +     ++  +  EGL
Sbjct: 805 VRTPVADVSRVGRNTQGVKLISLDEA--EQLVGLERVEGL 842


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/791 (32%), Positives = 406/791 (51%), Gaps = 65/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  ++ P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA +DN +I+IE+L+EYI GPDFPT  I +  R  I+++YR GRG   +RA+ 
Sbjct: 188 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAI-INGRRGILDAYRTGRGKIYIRAQA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 DIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  +F  + M+  F +NM  L     P+++ L  I+  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNHLFSQTQMQVSFGINMVAL-HQGQPKLLNLKEIIAAFIRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID +I +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLE 425

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +
Sbjct: 426 RAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQ 485

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++  + I  E+  +K  ++       RRT   E++        + +I +
Sbjct: 486 IAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRT---EITENTADINIEDLINE 537

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 538 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 597

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G   
Sbjct: 598 GRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGKFVFMATASGTVK 657

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + ++  +++  V    G +   +   + K++ F+ + +  M R
Sbjct: 658 KTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGR 717

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     D      +     EG   +      Y +           R   G +  K
Sbjct: 718 TATGVRGMKLVDDDKVVSLIIPRGEGD-ILTVTENGYGKRTVQSEYPTKNRATQGVISIK 776

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 777 VSERNGKVVGA 787



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 74/209 (35%), Gaps = 12/209 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 627 EQDERITAILPVREYEEGKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++  +L S DGK        +         ++ +  L  +  +V+  +      +
Sbjct: 687 DLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATGVRGM-KLVDDDKVVSLIIPRGEGDI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      +SE     R   G   +KVS    K+   ++V   D + ++     L
Sbjct: 746 LTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +   + ++  + R  +GV L    +  + 
Sbjct: 806 VRTRVSEVSIVGRNTQGVTLIRTTEDELV 834


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 415/756 (54%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++++ E+GL    +++KS
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+   HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  AGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ VDF   Y+    EP + PSK PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L +I +P ++ + L++ I GPDFPTG  I+  ++ I ++YR GRG  ++RA+
Sbjct: 187 MGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIM-GKDGIRQAYRTGRGSVKMRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIPYQV K++LIEKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 TTIETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P++++  ++  + M+  F + M  L     P+V+ L  ++  +L H+++V+ RR
Sbjct: 306 LKKDSNPNVILNLLYKHTQMQESFGIIMLALVNNE-PKVLNLAQVIFHYLEHQKDVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  I++GL IA  N+DE+I  IR     ++ +  +V +F+LTE Q +AI+
Sbjct: 365 TRYELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDKFNLTEIQAEAIV 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLRSL  LE  +++ E   LL + + + S+L   ++  N I  E+  VKE F+ +   
Sbjct: 425 EMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADEQKVLNIIRDELLVVKEKFADA--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    V+  D     + +I++E + V I+N+G+I+          K     ++A+ 
Sbjct: 482 --RRTLISNVAAGDFDI--EDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMG 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++    A T   +L  +  GK Y L    +   S    G  I  L+  + ++ +
Sbjct: 538 TKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T      ++ T  L + +  G       +E  ++ R G   + +  ++K+  V    G 
Sbjct: 598 TTVIPIKEFEETAYLFMATKHGIVKKTALTEYNSSRRDGLIAINLDEKDKLVAVELTHGK 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
           + + +  +    + FS + +  M R  +GV+  +        V+    I EG + +    
Sbjct: 658 EEIIMCTQEGIAIRFSEEDVRPMGRVTRGVKGITL--SQNDHVVKMDVIKEGASLLTVTA 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G +  K   R+G    
Sbjct: 716 NGYGKRTPMDEYRIQARGGKGIINIKTTKRNGAVTG 751



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +     E+     + +  G ++       + S      A++  E D L   
Sbjct: 592 DSDEYVTTVIPIKEFEETAYLFMATKHGIVKKTALTEYNSSRRDGLIAINLDEKDKLVAV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              H  + I++ + +G A      ++   R  G   + +  I L+ N  +V   V     
Sbjct: 652 ELTHGKEEIIMCTQEGIAIRFSEEDV---RPMGRVTRGVKGITLSQNDHVVKMDVIKEGA 708

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
            LL V++ G        E     R GK  + +     +     ++V    D V ++    
Sbjct: 709 SLLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRNGAVTGVLVVSEEDEVMMISAEG 768

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  ++  +  M R  +GV L    +      I   I E
Sbjct: 769 IIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKVITE 808


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/803 (30%), Positives = 406/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   F K
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + AL ++ N + ++++L+E I  PDFPTGGI +     + + YR GRG   +RA
Sbjct: 186 NITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGI-IYGVSGVRDGYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   EE G+     I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+
Sbjct: 245 KTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ 
Sbjct: 305 IELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NID+ IAII+    P   K  ++SR          
Sbjct: 364 RRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+++Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKIVN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   ++ +   +  +L   ++    I  E+   K  +         R +  E++  D  T
Sbjct: 484 EYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNK--DERRSTIELNATDLGT 541

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+         R+ K       A+  K+ D +     A+T D
Sbjct: 542 --EDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L   + I            +    
Sbjct: 600 YILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDH 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S G       S+     + G   + +   + +       G H V +  ++ K +
Sbjct: 660 YIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GVR  + ++G     +     E  + + +    + +         
Sbjct: 720 RFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQTSERNGKVVAA 802



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 13/194 (6%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++    + ++ G ++              + A+   +GD L  A        ++L S
Sbjct: 654 TFPEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFS 713

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIV 626
             GKA      ++         ++ + +L   Q ++   V ++  + +L  +  G     
Sbjct: 714 DSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTATENGFGKRT 772

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R  K  + + + E+   VV  T     D + ++     L+   + +I EM 
Sbjct: 773 PITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMG 832

Query: 683 RGK-GVRLQSYKDG 695
           R   GV L + +DG
Sbjct: 833 RATQGVTLIAVEDG 846


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/790 (33%), Positives = 407/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 AEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE  G+ G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++PL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILPLKDILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR E  P                      
Sbjct: 366 TIFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLD 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +       I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 AELIRILQNPDCLMEVIREELVAIKEQYNDP-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D ILL S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RMYWMKVYQLPEASRGARGRPIVNLLPLESNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + ++  +++  V    G + V +     K++ F  +Q+  M R 
Sbjct: 658 TSLIEFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  +  +G     +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGINLAEGDRVVSLIVPRGEGP-ILTVTQHGYGKRTAQAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G+ + +
Sbjct: 777 SERNGEVVGA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 ESNERITAILPVREYEEGRHVFMATASGTVKKTSLIEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+L     +V+  V      +
Sbjct: 686 DLTDGSNEVMLFSAYGKVVRFPENQVRSMGRTATGVRG-INLAEGDRVVSLIVPRGEGPI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      ++E    +R   G   +KVS    ++   V+V   D + ++ +   L
Sbjct: 745 LTVTQHGYGKRTAQAEYPTKSRATQGVISIKVSERNGEVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFK 704
           +   + ++  + R  +GV L    +D  +  + C  
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVA 840


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 399/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  +L+ NPE ++E+L+E +  PDFPT GI +     + E YR GRG   +R R   
Sbjct: 190 VLDACFSLLKNPETTVEELIELVPAPDFPTAGI-IYGTVGVKEGYRTGRGRVVMRGRTHF 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ + G   I++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---------------- 421
           F ++    R  +L+GL +A  N+DE+IAII+    P                        
Sbjct: 368 FELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRA 427

Query: 422 ---------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 AMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E++  F        RR+   E+    +    + +I  + +
Sbjct: 488 LLDILATAARVTAIITDELTEIRRQFGDK-----RRS---EIVENAQDLSLEDLIAPQDV 539

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+I+S         K       A   KE D +     A+T D IL  S  G+ 
Sbjct: 540 VVTLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRV 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVE 627
           Y L    +   S    G+ I  L  L  N+    I++   +D    + + +S G      
Sbjct: 600 YWLKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSVKSFDENHFIFMATSLGTVKKTA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
            +E     R G   + +   + +       G + V +V    K + F  D++ +M R  +
Sbjct: 660 LTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     +      +     +  T + +    Y +           RG  G        
Sbjct: 720 GVRGMKLAEDQQVLSLLIASNDQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSE 779

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 780 RNGLVVAA 787



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 81/207 (39%), Gaps = 13/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E +    A L     ++     + ++ G ++              + A++  EGD L  A
Sbjct: 626 EENEKINAILSVKSFDENHFIFMATSLGTVKKTALTEFANPRRSGIIAINLDEGDYLIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
              + ++ ++L+S  GKA       +         ++ +  L  +Q +++  +  +  + 
Sbjct: 686 EITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATRGVRGM-KLAEDQQVLSLLIASNDQQT 744

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           ++V +  G       ++   + R  +G   + VS    + +  K+    D + ++     
Sbjct: 745 VMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIMLITTGGV 804

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           L+   + +I E+ R   GV L +  +G
Sbjct: 805 LIRTRVSEIRELGRATQGVTLINLGEG 831


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/808 (30%), Positives = 407/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ ++++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++K +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIKVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L    +    I  E+  +++ F + + +G RR+T      
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQ-SKVGARRSTI---EH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + SG     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRQARGVRGMMLEDGQSVIAMLVAEDENQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + ++ G ++              + A++  +GD L  A        ++L S
Sbjct: 655 TFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFS 714

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIV 626
             GKA      ++         ++ ++ L   Q ++   V  D    +L  +  G     
Sbjct: 715 DGGKAVRFDENDVRPLGRQARGVRGMM-LEDGQSVIAMLVAEDENQSVLTATENGYGKRT 773

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
              E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ 
Sbjct: 774 SIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELG 833

Query: 683 RGK-GVRLQSYKDGG 696
           R   GV L S  +G 
Sbjct: 834 RATQGVTLISLDEGA 848


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 407/761 (53%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G     
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSAR VG+V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG+IDGD  AA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ +A  +++ +D+D VDF   ++E + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E  +  + LID+P+     L++ I GPDFPTGGIIV  RE I ++Y  GRG  
Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGII 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   IVVTEIPY+V KS++IEKIAEL+  +RI  + D+RDE+     
Sbjct: 242 TIRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGL 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P++++  ++  + M+  + + +  L  G+ P+V+ L  +L+ +L H+++
Sbjct: 302 RVVIELARGANPNVILNQLYKFTPMQVSYGIILLALVDGQ-PRVLTLKQLLRHYLDHQKD 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+   ++  + R  IL+GL IA  +ID +I +IR     D+ +  ++  FSLTE Q
Sbjct: 361 VILRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   LL E E + ++LNS K   + I  E+ E+++ F 
Sbjct: 421 AQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT              + +I +E + + +++RG+I+          +     
Sbjct: 481 D-----DRRTKIV---SGAADFEVEDLIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRG 532

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           ++ +  +E D +     A T + +L  +  GK Y      +        G A+  LI++ 
Sbjct: 533 VTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIE 592

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ +        +     LL+ + +G       +E     R G   L +   +++  V 
Sbjct: 593 RDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFSHIRRGGLIALALDPGDELVAVE 652

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-W 711
              G   V VV    + + F + ++  M R  +GV      +G   +V+  ++ +     
Sbjct: 653 LTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMGIRLDEG--DEVVGMEVADDEAHL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +      + +           RGG G        R+G+   
Sbjct: 711 LVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAG 751



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A +      ++   ++ + RG ++              L AL    GD L
Sbjct: 589 IEIERDEQVTAVIPVRDFGEDRDLLMCTRRGVVKRTALAEFSHIRRGGLIALALDPGDEL 648

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +L+++  G+A   P   + +       +   I L+   ++V   V D  
Sbjct: 649 VAVELTDGRGDVLVVTRLGQAIRFPVAEVRTMGRAARGVMG-IRLDEGDEVVGMEVADDE 707

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGEN 667
             LLV++  G        E  A  R GK    +S   +   V    V   G+ V ++ + 
Sbjct: 708 AHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARNGRVAGFEVVRPGEEVMLISQG 767

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +L   +DQ+    R   GV +   + G     + 
Sbjct: 768 GIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVA 803


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/781 (32%), Positives = 403/781 (51%), Gaps = 38/781 (4%)

Query: 1   MGVDNIS-NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M   N +  +       ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVH+R+++
Sbjct: 1   MTDVNTTPEAPDNTGGRIEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G      + K AR+VG+V+G  HPHGD ++Y++LVRLAQP+  R PL+ G GNFG
Sbjct: 61  AMYDSGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D AAA RYTE ++  +A  +L+ +D++ VDFR  Y+    EPVV P++FPNLL NG
Sbjct: 121 SPGNDPAAAMRYTECKLAPLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVES 235
           +SGIAVGMAT+IP HN++E+ E     +D+P+ S E+LL    E I GPDFPT G  +  
Sbjct: 181 SSGIAVGMATNIPPHNLREVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRG-RIVG 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I E+YR GRG   +RA   +EE  RG  C+VVTE+PYQV    L  KIAEL+   +I
Sbjct: 240 RRGIEETYRTGRGSITMRAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKI 299

Query: 296 PLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D++DES+    + ++    R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 300 SGIADVKDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRT 358

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + LD +++ W+AH+ EV+ RR+ + ++  + R  IL+ LL A   IDE+IA+IR     D
Sbjct: 359 LRLDQMIRHWVAHQIEVIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASAD 418

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             K  ++   ++ + Q  AIL+++LR L  LE  Q+ SE D L+A+    + +L S ++Q
Sbjct: 419 DAKNGLMELLAIDDVQARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEILESPERQ 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I  E+ E+ E +        RRT   E+   +     +  I +E I V I+  G+  
Sbjct: 479 RRIIRDELAEIVEKYGD-----DRRT---EIVPYEGDMRMEDFIAEEDIVVTITRGGYAK 530

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                  R+ K     +     K+ D ++      T   IL  +  G+ Y   A  L   
Sbjct: 531 RTRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPEL 590

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  +  L+    +++I        YD+   L++ +  G     + +E  +    G
Sbjct: 591 ARDSRGHHVANLVPFLPDEEIAQVLALRDYDAAPYLVLATRSGLVKKTKLAEFDSARSSG 650

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
              + +  ++++     V   D + ++  N + + F      +  M R   GV    + +
Sbjct: 651 IIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDDSLRPMGRATSGVIGMRFAE 710

Query: 695 GG-ISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G  +  +   +  EG T  + +    Y +        + KRGG G L  +     GK + 
Sbjct: 711 GDYLLSMDVIREGEGATDVLVATEGGYAKRTPADQYPVQKRGGKGVLTARIVESRGKLVG 770

Query: 753 S 753
           +
Sbjct: 771 A 771



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++  K    D +      A++ +E D L  A   + TD +LL+S++ +A
Sbjct: 624 PYLVLATRSGLVKKTKLAEFDSARSSGIIAINLREDDELIAARLVYPTDDLLLISSNAQA 683

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQ-----DIVTAFVYDSTCKLLVVSSKGNAFIVE 627
              PA +  S R  G A   +I +   +      +      +    +LV +  G A    
Sbjct: 684 IRFPASD-DSLRPMGRATSGVIGMRFAEGDYLLSMDVIREGEGATDVLVATEGGYAKRTP 742

Query: 628 ESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R GK  L    V S  K+   + V   D +  +  N  ++     +I +  R
Sbjct: 743 ADQYPVQKRGGKGVLTARIVESRGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQR 802

Query: 684 GK-GVRLQSYKDGGISDVIC 702
              GVRL     G     I 
Sbjct: 803 ATMGVRLMHLSKGNHVVAIA 822


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/804 (31%), Positives = 408/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  ++ R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++G     +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   +GD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 847


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/791 (34%), Positives = 410/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +I++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+  +K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDE-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S +GK        + S       ++  I+L     +V+  +      +
Sbjct: 686 DLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE    +R  K  + +   E+    +  V     D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQVDAADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 400/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------- 418
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIPMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIPMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+  C + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGCHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/760 (34%), Positives = 416/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E+N K V++   L + Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+G  +   
Sbjct: 2   LTEQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++A  +L  ++++ VDF   Y++   EP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+ID+P +  E L   I GPDFPT G I+  RE I ++Y  GRG  +
Sbjct: 182 PPHNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFIL-GREGIRKAYETGRGIVQ 240

Query: 252 VRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE+  R     IVVTEIPYQV K+RLIEKIAEL+ +++I  + D+RDES  +  
Sbjct: 241 MRARALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    + + P++++  ++ ++ M++ F + M  +  G+ P+V+ L  +L+ ++ HR+E
Sbjct: 301 RVVVELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQ-PRVLSLRAVLEHFIEHRKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           ++ RR  F ++  + +  IL+G  IA  N+DE+IAII+    P+      + RF+L+E Q
Sbjct: 360 IVTRRCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  +E  +I +E   +LA   ++  +L S  +    I  E+ E++E F+
Sbjct: 420 AQAILDMRLHRLTGMERDKIMAEYREILALINRLKEILASEVEILKIIKSELSEIREKFA 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+         + +I  E + V +S+ G+I+          +     
Sbjct: 480 DP-----RRT---EIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRNAVSLYRSQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           ++ +  KE D ++    A T   +L+ +  GK Y L    +  G     G+AI  L+ L 
Sbjct: 532 VTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGRASRGKAIVNLLQLQ 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +++ +      +     ++  +  G     +          G   L +   +++    
Sbjct: 592 SGENVTSILPVREFTEGRYIIFATQNGIVKKTDLMAYANPRSGGIIALTIDEGDRLVSTR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTW 711
              G+  V +  +N K + F       M R  +GVR  + + D  +  +         T 
Sbjct: 652 LSDGEMDVLLASQNGKAIRFPEKDARAMGRTSRGVRGMALEGDDQVIGMEVVSDTTAATL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +      Y +  N        RGG G +  K   R+GK +
Sbjct: 712 VTVTEHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVV 751



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 24/217 (11%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               + L      +    +  +  G ++           S  + AL   EGD L   +  
Sbjct: 594 ENVTSILPVREFTEGRYIIFATQNGIVKKTDLMAYANPRSGGIIALTIDEGDRL---VST 650

Query: 558 HTTD---RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
             +D    +LL S +GKA   P  +    R  G   + +  + L  +  ++   V   T 
Sbjct: 651 RLSDGEMDVLLASQNGKAIRFPEKD---ARAMGRTSRGVRGMALEGDDQVIGMEVVSDTT 707

Query: 613 KLLVVS--SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
              +V+    G        E     R GK  + + + E+   +  +  +  D  +  + +
Sbjct: 708 AATLVTVTEHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITD 767

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             K+L   +  +  + R  +GVRL   + G     + 
Sbjct: 768 GGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVA 804



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD----GKAYTLPAGNLLSGRGH 586
           R++   S  +  +  +  D +        T    L++      GK   L       GRG 
Sbjct: 677 RAMGRTSRGVRGMALEGDDQVIGMEVVSDTTAATLVTVTEHGYGKRTNLDEYR-QQGRG- 734

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ I  +     N  +V   + +    L+ ++  G       +++    R   G   + +
Sbjct: 735 GKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVL 794

Query: 645 SSEEKMKLVVKVTGDH 660
              E++  V K+    
Sbjct: 795 EPGERIVAVAKLAEKE 810


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/741 (50%), Positives = 527/741 (71%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V+ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT +  L+++ +D+D VDFR TY+  D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A + LI++P   I  ++ ++ GPDFPTGGII++  E I  +Y  GRG  R
Sbjct: 181 PPHNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R  DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I  R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLR LRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRLLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTV 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVTLTNQVVDITAFIIKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY   
Sbjct: 541 KFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPD 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E++A T+ GK  + V         + V GD +A +GE+RKLL
Sbjct: 600 QLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +LG
Sbjct: 660 VFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G L P GFP++ +F S
Sbjct: 717 KRGSTGKLPPMGFPKNNRFSS 737


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/788 (32%), Positives = 405/788 (51%), Gaps = 66/788 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L 
Sbjct: 61  YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ +  L 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
            + NPE SI++L+E I  PDFPTGG ++     + E YR GRG   +RA+   E++ +G 
Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGG-VIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGN 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              IVV  IPYQV K  L E+IAEL+  K+I  + DIRDES +D   ++    R   P++
Sbjct: 240 RQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +N+  L  G+ P+++ L  +++ +L HRREV+ RR+ F+++   
Sbjct: 300 VLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVFQLRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NID+ IAII+    P   +  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGG 418

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+E Q   ILN+RL+ L  LE+ +I  E  +++A    
Sbjct: 419 VAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIAD 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I+ E++ +K  FS S    RR     E+         + +I    +
Sbjct: 479 LLDILARPERITTIISEELQAIKAEFSTSAKDTRR----AEIEVNATELDTEDLITPMDM 534

Query: 521 TVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+I+        S K       A   KE D +     A+T D +L  S  G+ 
Sbjct: 535 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRV 594

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    +  G     G+ I  +  L   + +        +     + + +S+G      
Sbjct: 595 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTP 654

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   + +   + +       G H V +  +  K + F  + +  M R  +
Sbjct: 655 LSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 714

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR    ++G     +     E  + + +    Y +           RG  G +  +   
Sbjct: 715 GVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSS 774

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 775 RNGRVVGA 782



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++    + ++RG ++              + A+   +GD L  A        ++L S  G
Sbjct: 637 EDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAG 696

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEES 629
           KA      ++     +   ++ ++ L   Q ++   V  D T  +L  +  G       +
Sbjct: 697 KAVRFDENDVRPMGRNARGVRGMM-LEEGQTVIALLVAGDETQSVLTATENGYGKRTPIT 755

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E   + R  K  + +     +   +  V+ +  D + ++     L+   + +I EM R  
Sbjct: 756 EYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRAT 815

Query: 686 -GVRLQSYKDG 695
            GV L S  DG
Sbjct: 816 QGVTLISVDDG 826


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 401/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +       IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L     P+++ L   L+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA +NID II +IR    P                      
Sbjct: 366 TIFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++E F  +     RRT   E++        + +IE+E
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDA-----RRT---EITANTADINIEDLIEQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y     + + ++ G    
Sbjct: 598 RMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALAEFSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   +  G    +      Y +  +        R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDRVVSLIVPHGEGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      +     + +  G ++        +  +  + A++  +GD L   
Sbjct: 626 EADERITAILPVREYAEGVNVFMATASGTVKKTALAEFSRPRAAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L  +  +V+  V      +
Sbjct: 686 DLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDRVVSLIVPHGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDSDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V+     E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGS 854


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/788 (33%), Positives = 421/788 (53%), Gaps = 63/788 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  ++KKSA
Sbjct: 8   ILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VD+ D Y+  +SEP V P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A +ALID+  + ++ L++Y+ GPD PT GI +     I E+YR GRG   +RAR 
Sbjct: 188 REVIDACVALIDDDSLDVDALMQYLPGPDLPTAGI-INGTAGIHEAYRTGRGRMVMRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +EE  + G   I+V+E+PYQV K+RL+EKIAEL+  KR+  + ++RDES +D   V+  
Sbjct: 247 RIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L  G+ P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 LRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQ-PKLLNLRQILDAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------------ 420
           + F ++    R  +L+GL +A  NID +IA+I+      + K  ++SR            
Sbjct: 366 TIFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLE 425

Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+  Q  AIL LRL  L  LE+ +I  E   LL +  +
Sbjct: 426 RADATTPDDLSPDVGLGEDGYRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L SG++    I  E+  ++E +        RR+   E+         + +I  + +
Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDE-----RRS---EIIPQALDLTLEDLITPQDV 537

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ +      SA   K+ D +     A+T D +L  S+ GK 
Sbjct: 538 VVTLSHSGYAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKC 597

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    L   S +  G+ I  L+ L  ++ I        +D    + + +  G      
Sbjct: 598 YWLKVYELPQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAHFVFMATHNGTVKKTP 657

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S        G   L + +++ +  V    G   V +V +  K + F   Q+  M R   
Sbjct: 658 LSHFSRPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAMGRTAA 717

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR    + G    VI   I +    + +    Y +           RGG+G +  +   
Sbjct: 718 GVRGIRLEPG--QRVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSD 775

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 776 RNGEVVGA 783



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 17/208 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     +      + ++ G ++        +  S  + AL  +  D L   
Sbjct: 624 EPDERINAVLPVQEFDDAHFVFMATHNGTVKKTPLSHFSRPRSNGIIALDLRADDWLVDV 683

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                +  ++L+S  GKA       +   R  G     +  I L   Q ++   + D   
Sbjct: 684 AITDGSRDVMLVSDAGKAIRFEESQV---RAMGRTAAGVRGIRLEPGQRVIALLILD-DG 739

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENR 668
            +L  ++ G        E     R G   + +     + E +  V     D + ++  + 
Sbjct: 740 DILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRNGEVVGAVQVADEDEIMLITRHG 799

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            L+   +  I  +SR  +GV+L S  + 
Sbjct: 800 TLVRTPVADISRLSRNTQGVKLISLDED 827



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 19/193 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++R    +   +   G R      VS A KA   +              
Sbjct: 662 SRPRSNGIIALDLRADDWLVDVAITDGSRDVML--VSDAGKAIRFEESQ----------- 708

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R++   +  +  +  + G  +   L     D IL  + +G     P          
Sbjct: 709 ---VRAMGRTAAGVRGIRLEPGQRVIALLILDDGD-ILSATANGYGKRTPVEEYPRRGRG 764

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +  +   + N ++V A       ++++++  G       ++I   +R   G   + +
Sbjct: 765 GMGVICIQTSDRNGEVVGAVQVADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISL 824

Query: 645 SSEEKMKLVVKVT 657
             +E +  + ++ 
Sbjct: 825 DEDETLVGLERIE 837


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/821 (31%), Positives = 408/821 (49%), Gaps = 90/821 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +     RRT     +  +     + 
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDA-----RRTVI---NANEIDMSLED 557

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 558 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 617

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 618 FSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSN 677

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ-- 677
           G       +        G   + +   +++  V    GD  + +     K++ F   +  
Sbjct: 678 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEV 737

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL-TWI 712
                                  +  M RG  GVR    ++G    V+   + +G    +
Sbjct: 738 SVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEG--QKVVSLIVPKGDGAIL 795

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +           R   G +  K   R+G  + +
Sbjct: 796 TVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 654 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 713

Query: 558 HTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQLL-- 593
           +  D I+L S +GK      G                           R  G     +  
Sbjct: 714 NGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRG 773

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q +V+  V      +L V+  G     E SE  + +R  K  + +     +   
Sbjct: 774 IKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAV 833

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +  V     D + ++ +   L+    + +  + R  +GV +  
Sbjct: 834 VGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQGVTIIR 876


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/764 (31%), Positives = 415/764 (54%), Gaps = 31/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
                 +  + +   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM E+G+    
Sbjct: 2   NFTHGKIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSAR+VGEV+GK HPHGD +VYD++VRLAQ F  RYPL+ G GNFG++DGD AAA R
Sbjct: 62  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L  + ++ +DFR  +++   EP V P++FPNLL NG++GIAVGMAT+
Sbjct: 122 YTEARMSKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A + +IDNPE    +++++I GPDFPTGG+I+  RE I  +YR GRG  
Sbjct: 182 IPPHNLREVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLIL-GREGIRSAYRTGRGII 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA+  +E +  G   IVVTE+PYQV K++ IEKIA+L+  K++  + D+RDES     
Sbjct: 241 KIRAKTQIERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +  +L+  +F  + ++  F + M  L   + PQV+ L  +L  +L H+++
Sbjct: 301 RIVIELKRETNAQVLLNQMFKFTQLQQTFGIIMLALVNNK-PQVLNLREMLGHYLEHQKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL+GL IA  N+D +I +IR   N ++ +  ++  F LT+ Q
Sbjct: 360 VITRRTRFDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLMENFGLTQIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL+ L  LE  +++ E   L+ +   +  +L + +  +  I  E+ E+++ + 
Sbjct: 420 AQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRKKY- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                G  R T   +   D A   + +I +E + V +++ G+I+          K     
Sbjct: 479 -----GDDRRTAIVIDEDDFAV--EDLIAEEDMVVTLTHNGYIKRLPVTTYRVQKRGGRG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           ++ +  K  D ++    A T D +   +  GK Y      +        G AI  L+ + 
Sbjct: 532 ITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRGVAIVNLLAVE 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   + + + +G        E I   + G   L ++  +++  V 
Sbjct: 592 PGEYVTAVIPVKDFNAGQFMFMCTRQGYVKKTPLEEFINARKGGLIALSLAENDELIDVR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKICEGL 709
              G   VA+V  +   + F+ + +  M R  +GVR  S   G      +V+  ++ +  
Sbjct: 652 LTNGKYEVALVTYHGLSIRFAEENVRSMGRSARGVRGISLGPGDKVMSLEVLPPEMEQET 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + + +           RGG G    +   ++G  + +
Sbjct: 712 EMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKNGPVMGA 755



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           K++F         R          E      A +            + + +G+++     
Sbjct: 567 KKVFEIPESGRTTRGVAIVNLLAVEPGEYVTAVIPVKDFNAGQFMFMCTRQGYVKKTPLE 626

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L AL   E D L      +    + L++  G +      N+ S       +
Sbjct: 627 EFINARKGGLIALSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSMGRSARGV 686

Query: 591 QLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  I L     +++  V     +   ++LVV+ KG       SE  A TR GK    +  
Sbjct: 687 RG-ISLGPGDKVMSLEVLPPEMEQETEMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRI 745

Query: 647 EEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            EK   V+       GD V ++     ++      I    R  +GV L    +G     +
Sbjct: 746 LEKNGPVMGAKMVRPGDEVMMITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSL 805

Query: 702 CFKICE 707
              + E
Sbjct: 806 ARVVVE 811


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/791 (34%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE+++ +     RRT   E++        + +I +E
Sbjct: 486 GELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +D  +  +      E    I    
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGE 852


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/726 (51%), Positives = 519/726 (71%), Gaps = 5/726 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  A FKK 
Sbjct: 7   HIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTAGFKKC 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTE+R
Sbjct: 67  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTESR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T VA+ +L+G+DED+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN
Sbjct: 127 LTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AALALI  P  +  +LL ++ GPDFPTGG IVE R++I+ +Y  GRG FR+R++
Sbjct: 187 VGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSFRIRSK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 247 WDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTDIRLVLEP 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P +LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +VL RR
Sbjct: 307 KSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLLRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S+ R+QA+DRR+EIL G L  YLN+DE+I I+R ED  K  +++ F LTE Q D++LN+R
Sbjct: 367 SANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSALIAAFDLTELQADSVLNMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I++E   L AEK+ +  LL +  Q+W  IA EI+++++ F     LG+R
Sbjct: 427 LRSLRRLEEMEIRNEHARLSAEKQALHDLLENEGQRWKHIAGEIKDIQKTFG-GGTLGKR 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+   +    +        +E++P+TV++S +GWIR+++ H  D  AL FKEGD L +A+
Sbjct: 486 RSLLADA-PVEIDVEAALPVERDPLTVILSQKGWIRTVRGHGQDPQALKFKEGDDLGMAV 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             H+ DR+ + +TDG+A+TL   +L  GRG G+ ++LLIDL++++DI+T F  D   + L
Sbjct: 545 ECHSNDRLCVFATDGRAFTLRVADLPRGRGDGQPLRLLIDLSNDEDIITMFPLDDARRRL 604

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   IV ES + A  R G+  L +   E   + V   GDHV V+G+NR++L+F +
Sbjct: 605 LASSTGRGMIVAESAMTAEKRTGRQVLNLKDRESALICVPAEGDHVLVLGQNRRMLVFPL 664

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           DQ+PEM+RG GV LQ YKDGG+ D + F    G+ W D A     R+  DL  ++GKR  
Sbjct: 665 DQLPEMARGLGVILQKYKDGGLKDAVVFTADAGVAWPDPA---RVRAFADLKDYVGKRAE 721

Query: 736 VGSLVP 741
           +G   P
Sbjct: 722 MGKPAP 727


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTII 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPERLMEVIREELMAIKEQYNDP-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDKVVSLIIPRGDGDILTVTENGYGKRTEVTEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 13/241 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +V+  +      +
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDKVVSLIIPRGDGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E    +R   G   +KVS      +  V   T D + ++ +   L
Sbjct: 745 LTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERNGKVVGAVQVATTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +   + ++  + R  +GV L    +D  +  +      E    I            D   
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESLEGEEGADEAV 864

Query: 729 W 729
            
Sbjct: 865 R 865


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSAERLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINRE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  + +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   +  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIKL--AGEDSVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKENAVRAMGRTATGVRG-IKLAGEDSVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      ESE    +R  +G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 413/791 (52%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D+D VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 RANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  +  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +I+N   P                     
Sbjct: 364 RTIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++I+        RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +SN G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        + +   + + +  G   
Sbjct: 596 GKTYRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G+  + +  ++ K++ F+ D++  M R
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKLPEDDQVVSLIVPSNEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSDRNGPVVGA 785



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L  +    E    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK        +         ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGM-KLPEDDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVAEVSQVGRNTQGVTLIRTAED 829


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/742 (50%), Positives = 532/742 (71%), Gaps = 5/742 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L++  +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+C+A + LID+ P+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG  
Sbjct: 181 PPHNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSL 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R
Sbjct: 241 RVRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIR 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  +L+E+LAHR+ 
Sbjct: 301 LIIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQN 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           ++ RRS++ +  I  R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+A
Sbjct: 361 IVTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN RLRSLRKLEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T
Sbjct: 421 ILNTRLRSLRKLEEQEIINEHGNLQKQQAILEEILNNPKELWKVVKKEIKAVQTKFGLNT 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            +G RRT+F EV+  ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+
Sbjct: 481 VIGARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDA 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            K  L A+TTD+IL++S++G+ +TL A N+  G+G GE+I+LL+D+ +N DI    VY  
Sbjct: 541 EKFILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKP 599

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
              LL+ SS G  F+V  +E++A T+ GK  + +         + V GD +A +GE+RKL
Sbjct: 600 DQLLLLASSVGKGFLVNSNEVMAQTKTGKQIMNIPDGHACIACLPVNGDSIACIGESRKL 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL W         + E +++ +L
Sbjct: 660 LVFNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW---NNNGKVKLEKNIVAFL 716

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
           GKRG  G L P GFP++ +F S
Sbjct: 717 GKRGNTGKLPPMGFPKNNRFSS 738


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  +++D VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ EI++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V++ F  +     RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELVRDQFGDA-----RRT---EITANTSDINIEDLINRE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +        G   + ++  +++  V   +G D V +     K++ F  + +  M R 
Sbjct: 658 TALTGFSRPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIRL--AGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGVNVFMATASGTVKKTALTGFSRPRSAGIIAINLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  +      +
Sbjct: 686 DLTSGSDDVMLFSAAGKVVRFKENAVRAMGRTATGVRG-IRLAGEDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      E E    +R  +G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 405/758 (53%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +K
Sbjct: 5   QGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++AEL+LQ +D++ VDF   Y+E   EP V P+KFP LL NGTSGIAVGMAT+IP 
Sbjct: 125 VRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  L LID+P+ +I+ L++ I GPDFPT G+I+  ++ I ++Y  GRG  ++R
Sbjct: 185 HNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLIL-GQDGIRQAYTTGRGVIKMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E +  G   I+VTE+PYQV K+RL+EKIA+L+  K+I  +  + DES      ++
Sbjct: 244 ANARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + ++  F + M  L  G+ P+++ L  +L  ++AH+ +V+ 
Sbjct: 304 IDLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGK-PKILNLKEVLHYYIAHQEDVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + ++  + R  IL+GL IA  ++D +I  IR     D  +  ++S F L+E Q  A
Sbjct: 363 RRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   E+  ++L    +    I  E++ VK  F  + 
Sbjct: 423 ILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDA- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT              + +I +E + + +++  +I+                +  
Sbjct: 482 ----RRTRLT---VDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +  KE D ++  L   T   IL  +  G+ Y L A  +   S    G AI  L+ L  ++
Sbjct: 535 MPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        ++    L + + KG        E     + G   + +  ++++  V    
Sbjct: 595 KITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTD 654

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWIDS 714
           G+   ++G      ++F  D +  M R  +GV+  S  DG   +VI    +      +  
Sbjct: 655 GERDMILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDG--DEVIGMDTLSPNAEVLTV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 713 TAEGYGKRTETSEYRAQNRGGKGLINLKVTEKTGDVIG 750



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A +Q      +    + + +G ++          H   L+A++  + D L   
Sbjct: 591 EKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGV 650

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                   ++L +  G A      ++   R  G A + +  I LN   +++         
Sbjct: 651 KFTDGERDMILGTKWGMAIVFGEDDV---RAMGRAARGVKGISLNDGDEVIGMDTLSPNA 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
           ++L V+++G     E SE  A  R GK  + +     + + + L V      + ++    
Sbjct: 708 EVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKTGDVIGLRVVHPDQELMLITTEG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +I  I  +SR  +GV+L S   G    V    + +
Sbjct: 768 IVIRTNISDISVISRNTQGVKLMS--TGENDIVASMAVMD 805


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/821 (31%), Positives = 408/821 (49%), Gaps = 90/821 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 28  TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 88  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 266

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +     RRT     +  +     + 
Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDA-----RRTVI---NANEIDMSLED 557

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 558 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 617

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 618 FSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSN 677

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ-- 677
           G       +        G   + +   +++  V    GD  + +     K++ F   +  
Sbjct: 678 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEV 737

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL-TWI 712
                                  +  M RG  GVR    ++G    V+   + +G    +
Sbjct: 738 AVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEG--QKVVSLIVPKGDGAIL 795

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +           R   G +  K   R+G  + +
Sbjct: 796 TVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGA 836



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 654 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 713

Query: 558 HTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQLL-- 593
           +  D I+L S +GK      G                           R  G     +  
Sbjct: 714 NGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRG 773

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q +V+  V      +L V+  G     E SE  + +R  K  + +     +   
Sbjct: 774 IKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAV 833

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +  V     D + ++ +   L+    + +  + R  +GV +  
Sbjct: 834 VGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQGVTIIR 876


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/798 (32%), Positives = 412/798 (51%), Gaps = 70/798 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN +I++E+L++YI GPDFPT  + +  R+ I+++Y  GRG   +RA
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAAL-INGRKGIIDAYHTGRGKVYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVILNNLYSQTQLQTTFGINMVAL-DHGQPKLFGLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  +L+GL IA +NID II +I++   P+                    
Sbjct: 364 RTIFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL  
Sbjct: 424 ERGGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E++  +L S ++    I  E+  VKE F+       RRT   E++ A      + +I +
Sbjct: 484 IEELLLILGSPERLMEVIRDELHAVKEQFNDE-----RRT---EITAASHDIDLEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +       A   K+ D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L   + I        Y++   + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVREYEADKYVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQ---- 677
               ++       G   + +   + +  V      D + +  +  K++ F  S D+    
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKG 715

Query: 678 -IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR      G     +     EG   +      Y +           R  
Sbjct: 716 GVRGMGRTAAGVRGMKLAAGDKVVSLIVPHNEGD-VLTVTENGYGKRTALTEYPAKSRAT 774

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  K   R+G  + +
Sbjct: 775 QGVVSIKVSDRNGSVVGA 792



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 17/215 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E +    + +  G ++        +  S  + A++ ++GDSL   
Sbjct: 625 EEGERITAILPVREYEADKYVFMATADGTVKKTPLTDFSRPRSAGIIAVNLRDGDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKA--YTLPAGNLLSG--RGHGEAIQLL--IDLNHNQDIVTAFVY 608
              ++TD I+L S  GK   +   A     G  RG G     +  + L     +V+  V 
Sbjct: 685 DITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAAGDKVVSLIVP 744

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVV 664
            +   +L V+  G       +E  A +R   G   +KVS      +  V    GD   ++
Sbjct: 745 HNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMI 804

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
                L+   + ++  + R  +GV L    D  + 
Sbjct: 805 TNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELV 839


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/755 (33%), Positives = 403/755 (53%), Gaps = 29/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E GL     +KKS
Sbjct: 16  KIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYKKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ + HPHGD +VY+++VRLAQ F  RYPLI G GNFG++DGDS AA RYTEAR
Sbjct: 76  AVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF D Y+    EPVV P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 136 LSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID P+  ++++ + I GPDFPT G+I+  RE I  +YR GRG  +VRA+
Sbjct: 196 LGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLII-GREGIRNAYRTGRGSIKVRAK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +  G   IVVTEIPYQV K+RL++ I +L+  K+I  + D+RDES      ++  
Sbjct: 255 AQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRIVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  ++  + M+  F + M  L  G  P+V+ L  +L  +L H++EV+ RR
Sbjct: 315 LRRDVQPKVILNQLYKHTQMQENFGVIMLALVDG-RPRVLNLREMLTLYLDHQKEVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +   + R  I+ GL IA   +DE+I IIR   NE +    ++ RF L++ Q  AI+
Sbjct: 374 TRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMERFQLSDKQAKAIV 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E   L         +L S  + +  +  E+ E+K  F+     
Sbjct: 434 DMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRDELLEIKRKFADP--- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT        ++    + +I +E I V +++RG+I+          K     + A+ 
Sbjct: 491 --RRTQIV---LEEENLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMG 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   +L  +  G+ + L    +     +  G  +  L+ LN  + I
Sbjct: 546 TREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETI 605

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                    +    LL+ + KG        E   + R G   + +  ++ +  V++  G 
Sbjct: 606 TAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEGN 665

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + V +V    K + F  D++  M R  +GVR  +  D  +  V   K+ E    +  + R
Sbjct: 666 NEVMLVTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMV-VGLVKVREDAELVVVSER 724

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +           RGG G +      R+G   +
Sbjct: 725 GFGKRTTLEEYRPQGRGGKGIITMNVTDRTGPVAA 759



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 12/210 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHA 557
               A +    +E++   ++ + +G ++         S      A++  E D L   L  
Sbjct: 603 ETITAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRT 662

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + ++L++  GKA       +         ++  I L+ +  +V         +L+VV
Sbjct: 663 EGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRG-IALDDDDMVVGLVKVREDAELVVV 721

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           S +G        E     R GK  + ++  ++   V  V      D + ++     L+  
Sbjct: 722 SERGFGKRTTLEEYRPQGRGGKGIITMNVTDRTGPVAAVAVVKLEDELMLISAEGILIRL 781

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++ I    R  +GV L   +       + 
Sbjct: 782 GVEDISRQGRNTQGVTLMRLEPSDRVVAMA 811


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/790 (34%), Positives = 405/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  +D++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMALKEILAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   + +    Y +           R   G +  K 
Sbjct: 718 ATGVRGIRLGEGDSVVSLIVPRGEGA-ILTATQNGYGKRTAVEEYPTKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TDRNGPVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  +  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        +         ++  I L     +V+  V      +
Sbjct: 686 DLTAGKDEVMLFSAQGKVVRFKEDAVRPMGRTATGVRG-IRLGEGDSVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  +  G        E    +R  K  + +   ++    +  V     D + ++ +   L
Sbjct: 745 LTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/756 (34%), Positives = 403/756 (53%), Gaps = 28/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++  S+   +   +L+YA+S I  RA+PD+RDG KPVHRR+++AM ++GL     ++KS
Sbjct: 8   NIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEVIGK HPHGD +VYD+LVRLAQ F  R+PL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 68  ATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A  +L+ ++ D V+F   ++E   EP V P++FPNLL NG  GIAVGMAT IP HN
Sbjct: 128 LTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALI++PE+  E L  YI GPDFPTGGI+V +R  I E+ R GRG  RVRA+
Sbjct: 188 LGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTR-GIREAIRTGRGSVRVRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E++      IVVTE+PYQV K++L++KIAEL+  ++I  + D+RDES      ++  
Sbjct: 247 AHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P +++ ++F  + M+  F +N+  L  G VP+ +     L+ ++AH+ EV+ RR
Sbjct: 307 LKREAVPKVVLNNLFKHTQMQQSFGVNLVALVDG-VPKTLSYKEALRHYIAHQFEVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           +   +     R  IL+GLLIA  N+DE++  IR     +  +  +V RF L+E Q  AIL
Sbjct: 366 TRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKRFRLSERQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL+ L  LE  +++ +  +L+ + E ++ +L    + +  I  E+ E+K  ++     
Sbjct: 426 DLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADESKVYGIIREELLEIKAAYADE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
             RRT       A+     + +I +E + + IS+ G+++              V ++ + 
Sbjct: 483 --RRTAITAQEGAEFEV--EDLIAEEEMVISISHEGYLKSVPIGSFRKQGRGGVGVAGME 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KEGD ++      T   +L  +  GK Y L    L        G  +  L+ L   + I
Sbjct: 539 LKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAAKGRHVANLLPLAPGERI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTG 658
                   +D    LL  + +G        +     +  G   +K++  +++  V   + 
Sbjct: 599 AAVISTRDFDEAEYLLFATRRGMVKKTPFRDYNTPLKNEGIIAIKLAGGDELIAVRHASD 658

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D V  V  + K L F    +  M R   GV+  + K       +     E         
Sbjct: 659 EDEVVFVTRDGKGLRFRQGDVRPMGRATAGVKGITLKGDDALLSMDVVSDEAADLFMVTE 718

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +           RGG G +  K     GK   
Sbjct: 719 KGFGKRTAISEFRPQGRGGQGVIAMKVNGERGKIAG 754



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 20/220 (9%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHFKEGDSLKIAL 555
            R       +   E E + +  + RG ++               + A+    GD L    
Sbjct: 596 ERIAAVISTRDFDEAEYL-LFATRRGMVKKTPFRDYNTPLKNEGIIAIKLAGGDELIAVR 654

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTA-FVYDSTC 612
           HA   D ++ ++ DGK      G++   R  G A   +  I L  +  +++   V D   
Sbjct: 655 HASDEDEVVFVTRDGKGLRFRQGDV---RPMGRATAGVKGITLKGDDALLSMDVVSDEAA 711

Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS-SEEKMKLVVKVTGD--HVAVVGEN 667
            L +V+ KG       SE     R  +G   +KV+    K+  V  V      + +V   
Sbjct: 712 DLFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVNGERGKIAGVQVVRPGLHELVIVSNM 771

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
              +    D +P   R   GVR+ + ++G     +   + 
Sbjct: 772 GTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKVVS 811


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/746 (34%), Positives = 418/746 (56%), Gaps = 30/746 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD+AAA RYTEARM++++  +++
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D +D++D Y+ ++ EP V P++FPNLL NG SGIAVGMAT+IP H + EI +  LA
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  N +I+I +L+E+I GPDFPT G+IV  R  I  +Y  G+G   +RA+  +E+   G 
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIV-GRSGIRRAYETGKGSIMMRAKVEIEQKSNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + +++
Sbjct: 240 ETIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L   L  +L H++ V+ RR+ + ++  + 
Sbjct: 300 LNNLYKQTALQTSFGINMLALVDGQ-PKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR     D  K  ++++F+L+E Q  AIL++RL+ L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQFNLSEKQAQAILDMRLQRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E  NL A   ++  +L   ++    I  E+ E+K+ F+       RRT    V
Sbjct: 419 EREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFND-----VRRTEI--V 471

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           +   +    + +I +E I + +++ G+I+          K     +  +   + D ++  
Sbjct: 472 AGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYD 609
           L+  T D IL  +  GKAY      +        G  I  L+ +  ++ I T      +D
Sbjct: 532 LYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLGIEKDEWINTMIRIEEFD 591

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               L   + KG +     S+       G   + +  ++++  V    GD  + +  +N 
Sbjct: 592 EESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDELISVKLTDGDKQILIGTKNG 651

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDL 726
            L+ F    +  M R   GV+  +  +    +V+  +I E     +      + +     
Sbjct: 652 LLIRFDEKDVRSMGRTATGVKGITLVND--DEVVSMEIIEEDDHVLVITKHGFGKRTPAS 709

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L  RGG G        ++G  ++
Sbjct: 710 EYRLQSRGGKGLKTCNITDKNGPLVA 735



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 12/207 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        ++    ++E      + +G  +              L A++ +E D L  
Sbjct: 575 IEKDEWINTMIRIEEFDEESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDELIS 634

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   +IL+ + +G        ++ S       ++  I L ++ ++V+  + +    
Sbjct: 635 VKLTDGDKQILIGTKNGLLIRFDEKDVRSMGRTATGVKG-ITLVNDDEVVSMEIIEEDDH 693

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           +LV++  G       SE    +R GK     +  +K   +  V  VTG+  + ++  +  
Sbjct: 694 VLVITKHGFGKRTPASEYRLQSRGGKGLKTCNITDKNGPLVAVKSVTGEEDLMLITVHGV 753

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           L+   I  I    R  +GV+L S ++ 
Sbjct: 754 LIRMDIHAISITGRNTQGVKLISLREE 780


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/789 (31%), Positives = 392/789 (49%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A LAL++N E++I++L++ + GPDFPT GI +     + E YR GRG   +R R   
Sbjct: 190 IIDACLALLNNAEVTIDELIDLVPGPDFPTAGI-IYGVAGVREGYRTGRGRVVMRGRTHF 248

Query: 259 EEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +G     I++ E+PYQV K  L+EKI EL+  KRI  + D+RDES +    V+   
Sbjct: 249 EDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  ++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREVL RR+
Sbjct: 309 KRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLRHRREVLTRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            F ++    R  I +GL +A  N+DEIIA+I+    P        S              
Sbjct: 368 VFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQR 427

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L+E Q  AIL LRL+ L  LE  +I ++   LLA   
Sbjct: 428 AALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I  E+  ++  F      G +R +   +S  D     +  I    
Sbjct: 488 DLMDILARPERITEMIVEELTAIRAQF------GDKRRSEIVISTQDLGI--EDFITPVD 539

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+I+S         +       A   K  D +     A+T D IL  +  G+
Sbjct: 540 MVVTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGR 599

Query: 572 AYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    +  G     G+ I  L      + I        +     + + +++G     
Sbjct: 600 VYWLKVYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFTDDRYIFMCTAQGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
             S+     + G   + +  E+ +       G   V +V +  K + F  + +  M R  
Sbjct: 660 PLSDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR     D      +     +  T + +    + +           RG  G +   G 
Sbjct: 720 RGVRGMRLADQQQVLSLLVADNDQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGS 779

Query: 745 PRSGKFLSS 753
            R+G+ +++
Sbjct: 780 ERNGRVVAA 788



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 13/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +    + + +G ++              + A+   + D L  A
Sbjct: 627 EEGEKISAILPVKEFTDDRYIFMCTAQGTVKKTPLSDFSNPRKAGIIAVALDDEDVLIGA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
              + T  ++L+S  GKA      ++         ++ +  L   Q +++  V D+  + 
Sbjct: 687 EITNGTQDVVLVSDAGKAVWFDEEDVRPMGRTARGVRGM-RLADQQQVLSLLVADNDQQT 745

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +LV +  G       ++   + R  +  + ++  E+   VV        D + ++     
Sbjct: 746 VLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGRVVAARLVRDEDEIMLITTGGV 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           L+   + +I E+ R   GV L +   G
Sbjct: 806 LIRTRVREIRELGRATQGVTLIALDAG 832


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/737 (34%), Positives = 410/737 (55%), Gaps = 30/737 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+++G+    A+KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM++++  +++ + ++ +D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP+V P++FPNLL NGT+GIAVGMAT+IP H + E+ +  LAL  NP+I+I
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G+I+  R  I  +Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 AELMECIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + 
Sbjct: 240 YQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +NM  L  G  PQV+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++DE+I +IR+    D  +  ++ RF L+E Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDEVITLIRSSKTADIARQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+    ++ ++L   ++    I  E+ EVKE F+       +R T   +   + +   
Sbjct: 419 QDLMKLIAELKAILADEEKVLEIIREELTEVKERFND------KRRTEITIGGME-SIED 471

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I ++ I + +++ G+I+                +  +   + D ++  L   T D I
Sbjct: 472 EDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEQLLTTSTHDHI 531

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVS 618
           L  +  GK Y      +   S    G  I  L+ ++  +    I+    +     L   +
Sbjct: 532 LFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNAIIPIREFGDDQYLFFTT 591

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQ 677
             G +     S        G   + +  E+++  V   +GD   +V   N  L+ F+   
Sbjct: 592 KYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQD 651

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV+  +   G    V+  +I  E +  +      Y +        L  RGG
Sbjct: 652 VRSMGRNAAGVKAITL--GDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPIEEYRLQSRGG 709

Query: 736 VGSLVPKGFPRSGKFLS 752
            G        ++GK ++
Sbjct: 710 KGLKTCNITDKNGKLVA 726



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      +  G  +     S        L A+  +E D +  
Sbjct: 566 VDKGEWVNAIIPIREFGDDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVIS 625

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 626 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGDEDQVVGMEIVEEDMN 684

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 685 VLIVTKNGYGKRTPIEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGI 744

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++   +DQI +M R  +GVRL   ++      + 
Sbjct: 745 IIRMPVDQISQMGRNTQGVRLIRLENEQEVATVA 778


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/790 (32%), Positives = 402/790 (50%), Gaps = 65/790 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ +P++ I +L+  I  PDFPT GI +     I + Y+ GRG   +RAR   
Sbjct: 190 VIDACLLLLRDPDVDIAELMACIPAPDFPTAGI-IYGISGIKDGYQTGRGRVIMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ +G    I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    
Sbjct: 249 EELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDHFLRHRREVVTRRTL 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  +L+GL +A  N+DEIIA+I+    P        +               
Sbjct: 368 FELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVEEMLLRA 427

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q  AIL+LRL+ L  LE+ +I SE   +L + 
Sbjct: 428 MIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYREILDKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L + ++    I  E+  +K  F        RR+   EV    +    + +I   
Sbjct: 488 RDLLDILANPERITTIIVEELTAIKGQFGDP-----RRS---EVVIDAQNLNTEDLITPA 539

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+I+S         K       A+  +E D +     A+T D IL  S+ G
Sbjct: 540 DMVVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLG 599

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +   N+   S    G  +  L+ L  N+ I        +D T  + + ++ G    
Sbjct: 600 RVYWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFDDTRYVFMSTAGGTVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
              SE       G   + +   + +  V    G H V +  +  K + F  + +    R 
Sbjct: 660 TPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRN 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR      G     +     E +  + +    Y +           RG  G +    
Sbjct: 720 ARGVRGMKLGAGQQVISLLVADNENMAVLTATENGYGKRTPITEYTRHNRGTQGMIAINT 779

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 780 NVRNGKVVAA 789



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 72/210 (34%), Gaps = 13/210 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E +    A L     +      + +  G ++              + A+   EGD L
Sbjct: 625 VPLEQNEKINAVLPVKSFDDTRYVFMSTAGGTVKKTPLSEFSRPRTNGIIAIDLDEGDYL 684

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ++L S  GKA      ++     +   ++ +  L   Q +++  V D+ 
Sbjct: 685 IGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNARGVRGM-KLGAGQQVISLLVADNE 743

Query: 612 CK-LLVVSSKGNAFIVEESEIIANTR--KGKTFLK--VSSEEKMKLVVKVTGDHVAVVGE 666
              +L  +  G       +E   + R  +G   +   V + + +   +  + D + ++  
Sbjct: 744 NMAVLTATENGYGKRTPITEYTRHNRGTQGMIAINTNVRNGKVVAAQLVESSDEIMLITT 803

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              ++   + +I EM R   GV L +   G
Sbjct: 804 GGVMIRTRVSEIREMGRATQGVTLINLDAG 833


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/804 (31%), Positives = 407/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPDATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KR+  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  ++ R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++ +   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMEQIADLLDILARPERITAIIVEELTLIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++G     +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 81/236 (34%), Gaps = 25/236 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDV--ICFKICEGLTWIDSA 715
           +     L+   +D+I EM R   GV L +  +G  +S +  +     EG    DS 
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADSG 870


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/797 (31%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+R G KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPEATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------- 418
           + ++    R  +L+GL +A  NIDE I II+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRA 427

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       +++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFSADKYVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/761 (35%), Positives = 426/761 (55%), Gaps = 34/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +K
Sbjct: 6   ESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +R
Sbjct: 186 HNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++      V
Sbjct: 245 AKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +  +++ +++  + ++T F +NM  L  G  PQ++ L   L  +L H++EV+
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPQLINLKQALYHYLEHQKEVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++    R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  
Sbjct: 364 RRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F   
Sbjct: 424 AILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G  R T  ++   D+    + +I +E I + +S+  +I+                + 
Sbjct: 481 ---GDDRRTEIQLGGIDQ-LEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQ 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I  +I+L+ +
Sbjct: 537 GMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQD 596

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T             L+ V+ KG       S      R GK  +K   ++++  V  
Sbjct: 597 EVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVCL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG---LT 710
             G+ H+ +      L+ F    +  MSR   GV+    +DG   +VI   + +      
Sbjct: 657 TDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDG--DEVIGLDVADDDNQDE 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 715 ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V ++ +G I+     +          A+ F++ D L
Sbjct: 592 ELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ +           ++ +       ++  I L    +++   V D  
Sbjct: 652 IAVCLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKG-IRLRDGDEVIGLDVADDD 710

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVG 665
            +  +LVV+ KG        +   + R G         E   ++  +  V GD  + VV 
Sbjct: 711 NQDEILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVT 770

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++   +  I    R  +GVRL    +      + 
Sbjct: 771 NQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVA 808



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAH--TTDRILLLSTDG--KAYTLPAGNLLSGRG 585
           +R++   +  +  +  ++GD +     A     D IL+++  G  K  ++    L +  G
Sbjct: 680 VRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQDEILVVTEKGYGKRTSIEDYRLSNRGG 739

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G     L     N  +V     +    L+VV+++G    +E S I  N R  +G   ++
Sbjct: 740 MGVKTAKLT--ERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIR 797

Query: 644 VSSEEKMKLVVKVTGD 659
           +  E+ +  V KV  +
Sbjct: 798 LDEEQYVSTVAKVKKE 813


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/738 (50%), Positives = 526/738 (71%), Gaps = 4/738 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + +KK 
Sbjct: 5   KIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RYTE+R
Sbjct: 65  ARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYTESR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++  L++  +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP HN
Sbjct: 125 MTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A + LID+P+  +  ++ +I GPDFPTGGII++  E I  +Y  GRG  RVR+R
Sbjct: 185 LHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+ +IRDES + +R+V+ P
Sbjct: 245 WKKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVIEP 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++R+ DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ ++ RR
Sbjct: 305 RDRNCDPQVVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSIVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++ +  I  R+EIL+GL IAYLN DEII IIR ED+PK +M++ F LTE QV+AILN R
Sbjct: 365 STYLLNKIQHRLEILEGLRIAYLNFDEIIKIIREEDEPKAIMINWFKLTEIQVEAILNTR 424

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSL +LEE +I +E  NL  ++  ++ +LN+ K+ W  +  EI+ V+  F  +T +G R
Sbjct: 425 LRSLHRLEEQKIINEHSNLKKQQVILEEILNNPKELWKVVKKEIKTVQTKFGLNTVIGAR 484

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RT F EV+  ++     A I KEPIT++ S  GW+RS K H+ DLS + +KEGD+ K  L
Sbjct: 485 RTYFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSFKGHNNDLSNIKYKEGDTEKFIL 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A+TTD++L++S++G+ +TL A N+  G+G  E+I+LL+D+ +N DI    VY     LL
Sbjct: 545 KAYTTDKLLIVSSEGRFFTLLADNISKGKGTEESIKLLVDIGNN-DITNILVYKPDQLLL 603

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G  F+V  +E+IA T+ GK  + V +       +   GD VA +GE+RKLL+F+I
Sbjct: 604 LASSIGKGFLVNSNEVIAQTKTGKQIMNVPNGHICITCLPANGDSVACIGESRKLLVFNI 663

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           D+IPEM +G+GV LQ +KD  + DV  F   +GL W         + E +++ +LGKRGG
Sbjct: 664 DEIPEMKKGQGVTLQKFKDAKLLDVKIFNKEDGLGW---NNNGKVKLEKNIITFLGKRGG 720

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G L P GFP++ +F SS
Sbjct: 721 AGKLPPMGFPKNNRFSSS 738


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L +  +    I  E+  +KE ++       RRT   E++        + +I +E
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYND-----LRRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/788 (32%), Positives = 401/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 11  PVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARI 70

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 71  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAK 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 131 IAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NP++ IE+L+E +  PDFPT G  +     + E YR GRG   +RAR   
Sbjct: 191 VVDACLALLKNPDMDIEQLIELVPAPDFPTAG-FIYGLAGVKEGYRTGRGRVVMRARTHF 249

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G+G    I++ E+PYQV K+ L+ KI E++  KRI  + +IRDES +     +    
Sbjct: 250 EDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELK 309

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+++  ++  + M+  F +NM  +  G+ P++  L  +++ +L HRREV+ RR+ 
Sbjct: 310 RGENADVILNQLYKDTQMQDSFGINMVAIVDGQ-PKLCNLKDVIEAFLRHRREVVTRRTI 368

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  IL+GL +A  N+DEIIA+I+    P        +               
Sbjct: 369 FELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRV 428

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q  AIL LRL+ L  LE+ +I  E   ++ +   
Sbjct: 429 DEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDKITD 488

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L    +    I  E+  ++  F        RR+   E+    +    + +I  E +
Sbjct: 489 LLDILAKPARVTQIIGDELITIRSQFGDK-----RRS---EIVTHTQDMSMEDLIAPEDV 540

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+         R+ K       A   KE D +     A+T D IL  S  G+ 
Sbjct: 541 VVTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRV 600

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L   ++  G     G+ I  L+ L   + I        +     +   +S+G      
Sbjct: 601 YWLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPVKQFAEDQFIFFATSEGTVKKTP 660

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   + +   + +  V    G H V +  +  + + F  D +  M R  +
Sbjct: 661 LSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTAR 720

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR  +   GG    +     E  + + +    Y +           RG  G +  +   
Sbjct: 721 GVRGMNLAKGGKVIALLVAENEEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSE 780

Query: 746 RSGKFLSS 753
           R+GK +++
Sbjct: 781 RNGKVVAA 788



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 11/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L      ++      ++ G ++              + A+   EGD L   
Sbjct: 627 EAGEKINAILPVKQFAEDQFIFFATSEGTVKKTPLSDFANPRKAGIIAISLDEGDFLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S +G+A      ++         ++ +      + I      +    +
Sbjct: 687 AITDGKHDVMLFSDEGRAVRFDEDDVRGMGRTARGVRGMNLAKGGKVIALLVAENEEQSV 746

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           L  +  G       SE   + R  +  + + + E+   VV  T     D + ++G +  L
Sbjct: 747 LTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERNGKVVAATLVKPEDEIMLIGTSGVL 806

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +   +++I EM R   GV L +  +G
Sbjct: 807 IRTRVNEIREMGRATQGVTLMNVGEG 832


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/803 (31%), Positives = 407/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   F K
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGE +GK HPHGD S+YD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A  +L  +D++ VDF   Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + AL ++ N E +I++L+E I  PDFPTGGI +     + + YR GRG   +RA
Sbjct: 186 NITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGI-IYGVSGVRDGYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   EE G+     I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+
Sbjct: 245 KTHFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ 
Sbjct: 305 IELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NID+ IAII+    P   K  ++SR          
Sbjct: 364 RRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+++Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   ++++   +  +L   ++    I  E+   K  +         R +  E++  D  T
Sbjct: 484 EYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNK--DERRSSIELNATDLGT 541

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+         R+ K       A+  KE D +     A+T D
Sbjct: 542 --EDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L   + I            +    
Sbjct: 600 YILCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDR 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S G       S+     + G   + +   + +       G H V +  ++ K +
Sbjct: 660 YIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GVR  + ++G     +     E  + + +    + +         
Sbjct: 720 RFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+GK +++
Sbjct: 780 HGRGTKGMIAIQTSERNGKVVAA 802



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 13/194 (6%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++    + ++ G ++              + A+   +GD L  A        ++L S
Sbjct: 654 TFPEDRYIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFS 713

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIV 626
             GKA      ++         ++ + +L   Q ++   V ++  + +L  +  G     
Sbjct: 714 DSGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTATENGFGKRT 772

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R  K  + + + E+   VV  T     D + ++     L+   + +I EM 
Sbjct: 773 PITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDAADEIMLITTGGVLIRTRVAEIREMG 832

Query: 683 RGK-GVRLQSYKDG 695
           R   GV L + +DG
Sbjct: 833 RATQGVTLIAVEDG 846


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/761 (34%), Positives = 422/761 (55%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +E +  V +   +   +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +++ ++++ VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNP+IS+ +L++ YI GPDFPTGGII+  R  I +++  GRG 
Sbjct: 182 IPPHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR++  +E++G G   IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 ILVRSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   PD+++  ++ ++ ++T F +NM  L     P+ M +   L+ ++ H+ 
Sbjct: 301 IRIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVDK-TPKQMGIREALQHYVDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +I   +N+ + +  ++ +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+A    +  +L +  +  + I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANHDRVLSIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E+S AD     + +I  E + + ++  G+I+               
Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    +        G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +   V       +  LL V+  G       SE  +  + GK  + +   +++  V
Sbjct: 592 DKEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +    G   V      EG   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV--DGSIVVGAATSKEGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G+ +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVS 750



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           + ++  G ++       D        A+  +E D L         D I++  ++GKA   
Sbjct: 613 LFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRF 672

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
              ++   R  G     +   N +  IV  A        LL VS  G        E    
Sbjct: 673 HEDDI---RAMGRTASGVKGFNVDGSIVVGAATSKEGTHLLAVSENGYGKRTAIEEYRLT 729

Query: 635 TR--KGKTFLKVSSE-EKMKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           TR  KG   + V+++  ++  V  V GD    +V ++  ++  S+  I   SR  +GV+L
Sbjct: 730 TRGAKGVKTINVTNKTGELVSVRAVNGDEDAMIVTDSGIIIRISVGDIGIYSRNTQGVKL 789

Query: 690 QSY-KDGGISDVICFKICEGL 709
            +   D  ++ V   +  E +
Sbjct: 790 INVSGDESVAKVAIVEKEEDV 810


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/803 (30%), Positives = 407/803 (50%), Gaps = 70/803 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    +SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM EM   +   + K
Sbjct: 6   KETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGDQS+YD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A  IL  +D+D VDF   Y+ ++ EP V P++ PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + AL ++ N + +I++L+E I  PDFPT GI +     + + YR GRG   +RA
Sbjct: 186 NITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGI-IYGVSGVRDGYRTGRGRIVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   EE G+     I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+
Sbjct: 245 KTHFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ 
Sbjct: 305 IELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLQCFLSHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NID+ IAII+    P   K  +++R          
Sbjct: 364 RRTIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVREM 423

Query: 421 -------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+++Q   IL +RL+ L  LE+ +I +
Sbjct: 424 LVRTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVN 483

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   ++A+   +  +L+  ++    I  E+   K  +         R ++ E +  D  T
Sbjct: 484 EYKEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNK--DERRSYIEHNATDLGT 541

Query: 510 LQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I  + + V +S+ G+         RS K       A+  K+ D +     A+T D
Sbjct: 542 --EDLITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHD 599

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTC 612
            IL  S  G+ Y L    +   S    G+ I  +  L   + +            +    
Sbjct: 600 YILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDR 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLL 671
            + + +S G       S+     + G   + +   + +       G H V +  ++ K +
Sbjct: 660 YIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAV 719

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F  + +  M R  +GVR  + ++G     +     E  + + +    Y +         
Sbjct: 720 RFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGYGKRTPITEYTR 779

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RG  G +  +   R+G+ +++
Sbjct: 780 HGRGTKGMIAIQTSERNGRVVAA 802



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 83/217 (38%), Gaps = 17/217 (7%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPEDRYIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA      ++         ++ + +L   Q ++   V ++  + +L  +  G      
Sbjct: 715 SGKAVRFDENDVRPMGRTARGVRGM-NLEEGQQVIALLVAENEQQSVLTATENGYGKRTP 773

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R
Sbjct: 774 ITEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPSDEIMLITTGGVLIRTRVAEIREMGR 833

Query: 684 GK-GVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
              GV L + +DG    G+  ++   + EG   +D+ 
Sbjct: 834 ATQGVTLIAVEDGTKLSGLQRIVEPDVEEGDDAVDAT 870


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 393/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+ ++ E ++  ++++ VD    +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI++E+L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRIIMRAKAEIE-SDDTHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVKG-RPRLLSLQECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P   +  +  RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AI+++RL  L  L   ++ +E D ++   + +  +LN+ ++    +  E++EV
Sbjct: 418 LDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----VRRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ + +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+ +  +             +  +  ++  +  G                G   + +
Sbjct: 590 MLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G + + +   N +   F  D +  M R   GVR     D G   VI 
Sbjct: 650 NEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTMGRVSTGVRGMRLDDDGEDGVIG 709

Query: 703 F---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDTEKETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 90/236 (38%), Gaps = 17/236 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++  EGD +      +  + +
Sbjct: 608 LNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTNGVIAININEGDEVVDVRLTNGNNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFVYDSTCK--LLVVSSK 620
           ++ + +G+A       + +       ++ +   +  +D ++   V + T K  ++VVS +
Sbjct: 668 IIANRNGRACRFHEDAVRTMGRVSTGVRGMRLDDDGEDGVIGMIVVNDTEKETVMVVSEE 727

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G        +     R GK    ++  EK   +  +  VT +  + ++ ++  ++  ++ 
Sbjct: 728 GYGKRSMVEDYRLTNRGGKGVKTLNITEKTGKLVAIKNVTDENDLMIINQSGIVIRLAVA 787

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +   M R   GVRL +   K+  I+ V             + +   +N++  ++  
Sbjct: 788 ECRVMGRATQGVRLINLAKKNDVIASVCKVMNAELEEELEEESRSKFNKTNEEIEN 843


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/762 (35%), Positives = 426/762 (55%), Gaps = 34/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +
Sbjct: 5   SESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP
Sbjct: 125 EARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +
Sbjct: 185 PHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIM 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++      
Sbjct: 244 RAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    +  +  +++ +++  + ++T F +NM  L  G  PQ++ L   L  +L H++EV
Sbjct: 304 VVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPQLINLKQALYHYLEHQKEV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q 
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F  
Sbjct: 423 QAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF-- 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  ++   D+    + +I +E I + +S+  +I+                +
Sbjct: 481 ----GDDRRTEIQLGGIDQ-LEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGV 535

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I  +I+L+ 
Sbjct: 536 QGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQ 595

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T             L+ V+ KG       S      R GK  +K   ++++  V 
Sbjct: 596 DEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVR 655

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG---L 709
              G+ H+ +      L+ F    +  MSR   GV+    +DG   +VI   + +     
Sbjct: 656 LTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDG--DEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V ++ +G I+     +          A+ F++ D L
Sbjct: 592 ELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ +           ++ +       ++  I L    +++   V D  
Sbjct: 652 IAVRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKG-IRLRDGDEVIGLDVADDD 710

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVG 665
            +  +LVV+ KG        +   + R G         E   ++  +  V GD  + VV 
Sbjct: 711 NQDEILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVT 770

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++   +  I    R  +GVRL    +      + 
Sbjct: 771 NQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVA 808



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAH--TTDRILLLSTDG--KAYTLPAGNLLSGRG 585
           +R++   +  +  +  ++GD +     A     D IL+++  G  K  ++    L +  G
Sbjct: 680 VRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQDEILVVTEKGYGKRTSIEDYRLSNRGG 739

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G     L     N  +V     +    L+VV+++G    +E S I  N R  +G   ++
Sbjct: 740 MGVKTAKLT--ERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIR 797

Query: 644 VSSEEKMKLVVKVTGD 659
           +  E+ +  V KV  +
Sbjct: 798 LDEEQYVSTVAKVKKE 813


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/804 (31%), Positives = 406/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILAKPERITAIIVEELTAIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++      +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSGAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L  NQ ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEENQQVIAMLVAPAETAGEGA 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QSGAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L S  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLISVGEG 847


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTII 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++ +     RRT   E++        + +I +E
Sbjct: 486 GELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  +    G   VI   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGINL--NGDDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 13/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 686 DLTDGSNEVMLFSALGKVVRFPETQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVTPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
           +   + ++  + R  +GV L    +D  +  +      E    I    
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGE 852


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/808 (30%), Positives = 414/808 (51%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+++++  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKISHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ +I++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS---- 422
           EV+ RR+ + ++    R  +L+GL +A  NID+ IAIIRN   P   K  +++R      
Sbjct: 360 EVVTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKL 419

Query: 423 --------------------------------------LTENQVDAILNLRLRSLRKLEE 444
                                                 L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L+  ++    I  E++++K  F + + +G RR+T   V  
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQ-SKVGARRST---VEY 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+        S K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GV+  + ++G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGMNLEEGQSVIAMLVAEDESQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++     +   ++ + +L   Q ++   V  D +  +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGM-NLEEGQSVIAMLVAEDESQSVLTATENGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 IVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGR 834

Query: 684 GK-GVRLQSYKDGG 696
              GV L S  +G 
Sbjct: 835 ATQGVTLISLDEGA 848


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/731 (51%), Positives = 505/731 (69%), Gaps = 7/731 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    +  AL  RYLAYALSTI  RA+PD+RDGFKPVHRRI++AM +M L+  AA +K 
Sbjct: 12  RIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA RYTE +
Sbjct: 72  AKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECK 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T  A L+L G+D+D+VDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMATSIP HN
Sbjct: 132 LTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V E+ +A   L+D PE +  +L++ + GPDFPTGG+ VE   SI+++Y  GRGG R+RAR
Sbjct: 192 VGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRAR 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E++GRG W I+VTE+PYQVQKSRLIE +A+LI  K+ PLL D+RDESAED+R++L P
Sbjct: 252 WETEDLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAEDIRLILEP 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           KNR+++P++LMES+F LSD+E RFP+NMNVL     P+VM L   L+ +L HRREVL RR
Sbjct: 312 KNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRR 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S +R+  +++R+ +L+GL I +LNIDE+I I+R E++PK V+++RF LTE Q D IL+ R
Sbjct: 372 SQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTR 431

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L +LEE  I+ E   L  E   + +L +S  +QW  I+ E+  V++          R
Sbjct: 432 LRQLARLEEMTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKALISP-----R 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT  +          +A I +E ITV++S RGWIR+ K    D S L FKEGD L   +
Sbjct: 487 RTTIADAVDTSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLV 546

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A+TTD++L+ ++DG+ +T+ A  L SGRGHGE ++L+IDL+   +I+    +    KLL
Sbjct: 547 PAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLL 606

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + S  G  FI  E + +A  R GK  L       +++    T DHVA +GEN K LIF +
Sbjct: 607 IASKAGYGFIAPEDDTLAQKRGGKQVLNGDMLAMLRIPQTPTADHVATIGENIKTLIFPL 666

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           D++PEM RGKGVRLQ++K GG++DV  F   +G  W D  GR   R+  D   WLGKR G
Sbjct: 667 DELPEMGRGKGVRLQNFKQGGLADVTVFNAEQGPEWADGGGR--RRNWPDWKDWLGKRAG 724

Query: 736 VGSLVPKGFPR 746
            G   P+G  +
Sbjct: 725 AGRQGPRGLRK 735


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/795 (34%), Positives = 413/795 (51%), Gaps = 63/795 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALID P +SIE+L+E+I GPDFPT  I V  R+ I ++Y+ GRG  
Sbjct: 182 IPPHNLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAI-VNGRKGIEDAYKTGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + ++T F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEVKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL+LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E++EV E+F        RRT   E++ +      + 
Sbjct: 480 LLELIAALLYILRSPERLMEVIKEELQEVLEVFGDE-----RRT---ELNASAVDISLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L   + I        YD+   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G        +       G   + +   +++  V    GD  V +     K++ FS DQ+ 
Sbjct: 652 GTVKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVR 711

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR    +DG     +     +G   +      Y +           R   G 
Sbjct: 712 GMGRTATGVRGIKLEDGQSVVSLIVPKNDGA-ILTVTENGYGKRTELDEYPAKSRATKGV 770

Query: 739 LVPKGFPRSGKFLSS 753
           +  K   R+G  + +
Sbjct: 771 VSIKVSERNGAVVGA 785



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L     + +   ++ ++ G ++              + A++ K+GD L      
Sbjct: 628 ERITAILPVREYDADKYVIMATSHGTVKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
           +  + ++L S +GK        +   RG G     +  I L   Q +V+  V  +   +L
Sbjct: 688 NGDNEVMLFSNEGKVVRFSEDQV---RGMGRTATGVRGIKLEDGQSVVSLIVPKNDGAIL 744

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLL 671
            V+  G     E  E  A +R  K  + +     +   +  V  +  D + ++ +   L+
Sbjct: 745 TVTENGYGKRTELDEYPAKSRATKGVVSIKVSERNGAVVGAVQVLENDEIMLISDKGTLV 804

Query: 672 IFSIDQIPEMSR-GKGVRLQS 691
                 +  + R  +GV +  
Sbjct: 805 RTPASGVSTIGRNTQGVTIIR 825


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/810 (31%), Positives = 413/810 (50%), Gaps = 75/810 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPTGGI +     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMEIIPAPDFPTGGI-IYGINGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +++HRR
Sbjct: 301 MRLVIDLKRGEVPEVVLNNLYKQTQLQDTFGINMVALINGQ-PKLCNLKDLIQVFISHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAIIRN   P   K  +++R      
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRAHADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++AE + +  +L   ++    I  E+  +K  F + T LG RR+    +  
Sbjct: 480 DKIVAEYKEVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQ-TKLGARRS---HIEH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 SSFDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        +     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG--LTWIDSAGRSYNRSE 723
             K + F  + +  M R  +GVR  + ++G    VI   + E    + + +    + +  
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNLEEG--QGVIAMLVAEDGEQSVLTATQMGFGKRT 773

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +        RG  G +  +   R+GK +++
Sbjct: 774 SISEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
            GKA      ++     +   ++ + +L   Q ++   V +     +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGM-NLEEGQGVIAMLVAEDGEQSVLTATQMGFGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            SE   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I EM R
Sbjct: 775 ISEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGR 834

Query: 684 GK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
              GV L    +G        +I E    +D   ++
Sbjct: 835 ATQGVTLIGLDEGSQLS-GLQRIVENDATLDDTEKT 869


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/743 (51%), Positives = 514/743 (69%), Gaps = 11/743 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ A L+L G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A   L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL P
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I+ R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN R
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTR 436

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-------IACEIREVKEIFSK 488
           LR L KLEE +I+ E   L+ E++ I ++L S  +QW         +   + ++K    K
Sbjct: 437 LRQLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDK 496

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
               G   R+ F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKE
Sbjct: 497 PAPTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKE 556

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L   + A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F 
Sbjct: 557 GDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFP 616

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           + +  K ++ S  G  F++ E E +AN + GK  L V   E     ++  GD +AV+G+N
Sbjct: 617 FKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNV-GNEGAAFCLEAVGDQLAVIGDN 675

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            K+LIF ++++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR   R   +  
Sbjct: 676 GKILIFPLEELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGR--RRDWAEWK 733

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W+G+R G G LVPKGF  + +F
Sbjct: 734 EWVGRRAGAGKLVPKGFATNKRF 756


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/804 (31%), Positives = 406/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTAIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++      +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L  NQ ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEENQQVIAMLVAPAETAGEGA 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QSVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L S  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLISVGEG 847


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/808 (30%), Positives = 414/808 (51%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VD+   Y+  + EP+V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+  P+ +I++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS---- 422
           EV+ RR+ + ++    R  +L+GL +A  NID+ IAIIRN   P   K  +++R      
Sbjct: 360 EVVTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKL 419

Query: 423 --------------------------------------LTENQVDAILNLRLRSLRKLEE 444
                                                 L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L+  ++    I  E++++K  F + + +G RR+T   V  
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQ-SKVGARRST---VEY 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+        S K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GV+  + ++G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGMTLEEGQSVIAMLVAEDESQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++     +   ++ +  L   Q ++   V  D +  +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVKGM-TLEEGQSVIAMLVAEDESQSVLTATENGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 IVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGR 834

Query: 684 GK-GVRLQSYKDGG 696
              GV L S  +G 
Sbjct: 835 ATQGVTLISLDEGA 848


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/794 (33%), Positives = 416/794 (52%), Gaps = 65/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   +++ YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P + I  ++ +I GPDFPT GI+  SR  I E+Y  GRG   +
Sbjct: 184 PHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSR-GIQEAYLTGRGRIFL 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE +   G   I+VTE+PY V K+RL+EKI EL+  K+I  +  +RDES ++   
Sbjct: 243 RARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R+  P++++  +++ + ++T F +NM  L  G+ PQV+ L   L+ +L HR+EV
Sbjct: 303 MVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQ-PQVLNLKLALEAFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ F ++    R  +L+GL IA  NID +IA+I+    P                  
Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL++RL  L  LE+ +I  E   +
Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++  +L + ++    I  E+ E+++ + +      RRT   E+         + +
Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQYGE-----LRRT---EIQYNHVDLRLEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ GK Y      L  G     G+ I  L+ L   + I T      ++    + +V++ G
Sbjct: 594 SSRGKVYWKKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVTASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  +        G   L++   +++       G+  + +     K++ FS  ++  
Sbjct: 654 VVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GV+           VI   I    T + +    Y +        L  RGG G +
Sbjct: 714 MGRTARGVKGMELPPEHR--VIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQGII 771

Query: 740 VPKGFPRSGKFLSS 753
             +  PR+G+ + +
Sbjct: 772 SIQTTPRNGQVVGA 785



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 75/230 (32%), Gaps = 19/230 (8%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
           K+++         R          E        L     E+     +++  G ++     
Sbjct: 602 KKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVTASGVVKKTSLA 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +     + AL  +EGD L  A        I+L S+ GK        +         +
Sbjct: 662 VFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKVRPMGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SS 646
           + + +L     ++   +  +   +L  +  G       +E     R G+  + +     +
Sbjct: 722 KGM-ELPPEHRVIALIIARNGT-ILTATELGYGKRTAIAEYRLQGRGGQGIISIQTTPRN 779

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + +  V     D + ++     L+   +  I  M R  +GV+L +  +G
Sbjct: 780 GQVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEG 829


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 416/755 (55%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      KKSA
Sbjct: 9   VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 69  RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 129 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG   +RA+ 
Sbjct: 189 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 247

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV      I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 248 TIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + +++ F +    L  G  P+V+ L  +L  +L H+R V+ RR+
Sbjct: 307 RRDVNPNVVLNNLFKHTALQSNFGIINIALVNGE-PKVLNLKEMLYYYLEHQRVVIRRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR+    D  +  ++ +F L+ +Q  AIL+
Sbjct: 366 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 425

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +       
Sbjct: 426 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 481

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  + A   + +I +E + + I++ G+++          +     +  +  
Sbjct: 482 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 537

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K  D ++     ++   ++  +  GK Y L A  +        G  I  LI +   + + 
Sbjct: 538 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPELGRTARGTPIINLIQIEQGETVN 597

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  ++S   L   + +G        +     + G   + +  ++++  V    G+ 
Sbjct: 598 AVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGVKLTDGNC 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGR 717
           ++ +       + F    +  M R   GV+     +     VI   I  E  T +    +
Sbjct: 658 NIIMGTRQGMSIHFPERDVRSMGRAATGVKGIHISED--DAVIDMDIVDENNTVLIVTSK 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        ++G  + 
Sbjct: 716 GFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVG 750



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A +     E        + +G ++              L A++ +E D L
Sbjct: 588 IQIEQGETVNAVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +   P  ++ S       ++  I ++ +  ++   + D  
Sbjct: 648 IGVKLTDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGVKG-IHISEDDAVIDMDIVDEN 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L+V+SKG       SE    TR GK    +     +   + L V    + + ++  +
Sbjct: 707 NTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVGLKVVEEDEDLMIITAS 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQ 690
             ++  S+  I  M R  +GVRL 
Sbjct: 767 GTVIRTSMSGISIMGRNTQGVRLI 790


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/797 (32%), Positives = 400/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFIFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/797 (32%), Positives = 401/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------ 422
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRA 427

Query: 423 -------------------------------LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFIFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ EISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S  +    I  E+  V++ F        RRT   E++        + +I +E
Sbjct: 486 AGLLHILGSADRLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINRE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  + +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   +  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIKL--AGEDAVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKENAVRAMGRTATGVRG-IKLAGEDAVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      ESE    +R  +G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID  
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGT 854


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/773 (30%), Positives = 395/773 (51%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MEDNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +D+D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP IS E+L++YI  PDFPTG   +   + +  +Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGA-YIYGLQGVKNAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E  G     IVVTEIPY V K++LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SGETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVNG-RPRLLNLQECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GLLIA  NIDE++ IIR    P     +   RF+
Sbjct: 358 EHRHDVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKRFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ ++
Sbjct: 418 LDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNPERCKEVMKNELYDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  + +G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  T  ++ V+ KG                G   + +
Sbjct: 590 MLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAYSRPRNNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G D + +  +N +   F  + +  M R   GVR     + G  +VI 
Sbjct: 650 NDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTMGRVSTGVRGMKLDEDGEDEVIG 709

Query: 703 F---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MVVVNDSENETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 83/214 (38%), Gaps = 16/214 (7%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V ++ +G ++        +  +  + A++  +GD +      + +D +++   +G
Sbjct: 615 DTHYVVFVTKKGLVKKTLLRAYSRPRNNGVIAININDGDEVVDVRLTNGSDELIIADKNG 674

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVE 627
           +A      N+ +       ++ +      +D V   V         ++VVS +G      
Sbjct: 675 RACRFHENNVRTMGRVSTGVRGMKLDEDGEDEVIGMVVVNDSENETVMVVSEEGYGKRSL 734

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            S+     R GK    ++  EK   +  +  VT D  + ++ ++  ++  ++ +   M R
Sbjct: 735 VSDYRLTNRGGKGVKTLNITEKTGKLVAIKTVTDDNDLMIINKSGIVIRMAVSECRVMGR 794

Query: 684 GK-GVRLQSY--KDGGISDVICFKICEGLTWIDS 714
              GVRL +   K   I+ V   +  E    +D 
Sbjct: 795 ATQGVRLINLSKKSDTIASVCKVRSAEMEEKVDE 828


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/762 (35%), Positives = 427/762 (56%), Gaps = 34/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +
Sbjct: 5   SESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP
Sbjct: 125 EARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +
Sbjct: 185 PHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIM 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311
           RA+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++      
Sbjct: 244 RAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    +  +  +++ +++  + ++T F +NM  L  G  PQ++ L   L  +L H++EV
Sbjct: 304 VVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPQLINLKQALYHYLEHQKEV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q 
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F  
Sbjct: 423 QAILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF-- 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  ++   D+    + +I +E I + +S+  +I+                +
Sbjct: 481 ----GDDRRTEIQLGGIDQ-LEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGV 535

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             ++  + D +   +   T D++L  +  G+ Y L    +   S +  G  I  +I+L+ 
Sbjct: 536 QGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQ 595

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T             L+ V+ KG       S      R GK  +K   ++++  V 
Sbjct: 596 DEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVR 655

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG---L 709
              G+ H+ +      L+ F    +  MSR   GV+    +DG   +VI   + +     
Sbjct: 656 LTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKGIRLRDG--DEVIGLDVADDDNQD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 714 EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V ++ +G I+     +          A+ F++ D L
Sbjct: 592 ELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ +           ++ +       ++  I L    +++   V D  
Sbjct: 652 IAVRLTDGEKHILIGTAQASLIRFKETDVRAMSRIAAGVKG-IRLRDGDEVIGLDVADDD 710

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVG 665
            +  +LVV+ KG        +   + R G         E   ++  +  V GD  + VV 
Sbjct: 711 NQDEILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVT 770

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++   +  I    R  +GVRL    +      + 
Sbjct: 771 NQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVA 808



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAH--TTDRILLLSTDG--KAYTLPAGNLLSGRG 585
           +R++   +  +  +  ++GD +     A     D IL+++  G  K  ++    L +  G
Sbjct: 680 VRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQDEILVVTEKGYGKRTSIEDYRLSNRGG 739

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G     L     N  +V     +    L+VV+++G    +E S I  N R  +G   ++
Sbjct: 740 MGVKTAKLT--ERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIR 797

Query: 644 VSSEEKMKLVVKVTGD 659
           +  E+ +  V KV  +
Sbjct: 798 LDEEQYVSTVAKVKKE 813


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 402/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L     P+++ L   L+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYTQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA +NID II +IR    P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++E F  +     RRT   E++        + +IE+E
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDA-----RRT---EITANTADINIEDLIEQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y     + + ++ G    
Sbjct: 598 RMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   +  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGEDRVVSLIVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      +     + +  G ++        +  +  + A++   GD L   
Sbjct: 626 EADERITAILPVREYAEGVNVFMATASGTVKKTALTEFSRPRAAGIIAVNLNYGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 DLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGEDRVVSLIVPHGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V+     E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGS 854


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 412/762 (54%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG  I+     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEE-NGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   ++ +       + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +     +  G  I  LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTITDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +C  I  +    
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMDIAVDEEEL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 709 LVISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++  G+        +R +   +  + A+  K+ D       A   + +L++S +G  
Sbjct: 658 VMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEELLVISENGFG 717

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              P          G  +           +V A V     +L+++++ G A  +  S+I 
Sbjct: 718 KRTPVSEYKIQHRGGVGLITYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDIS 777

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKV 656
             +R   G T ++ + EEK+  + K+
Sbjct: 778 KTSRAAMGVTLMRTNEEEKIVAIAKI 803


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 406/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +SEP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NP+ SI++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACHHLLANPQASIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    ++V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +LAHRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLECFLAHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NID+ I +I+    P   +  +++R              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++L+E Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTIIGEELTAVKSEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMGT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G+H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 14/207 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G ++     +        + A+   EGD L  A        ++L S  GKA  
Sbjct: 655 VFMGTSLGTVKKTPLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L   Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGKVVAATLVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG-GISDVICFKICEGLTWIDS 714
           L S  +G  +S +      +  + ID+
Sbjct: 834 LISLDEGTRLSGLQQIAEADADSEIDA 860


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/765 (47%), Positives = 513/765 (67%), Gaps = 16/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ +S     + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++  
Sbjct: 1   MATTDLDDSGADPFDAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWT 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD  + FKKSAR+VGEVIGK HPHGD + YD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRQLKLDPASGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+T+ A  +++G+D   VDF  TYN E+ EP + P  FPNLLANG 
Sbjct: 121 IDGDNAAAYRYTEARLTKTAMRLMEGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IPSHNV EI +A L +IDNP +   +L+E   GPDF TGG++ ES E+I 
Sbjct: 181 SGIAVGMATNIPSHNVAEIVDATLEVIDNPHVEHARLMEIFKGPDFATGGVVPESTETIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y  GRG FRVR R+              +E +G G W +V++EIPYQV K +LIE+IA
Sbjct: 241 HAYETGRGSFRVRGRFHAAEAEKEEDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
             I  +++P+LED+RDES E +RIVL P++R++DP+LL ESI+ L+DMETRF LN+NVL 
Sbjct: 301 AAIADRKLPILEDVRDESDEQIRIVLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P VM L  +L+ W+A + ++L RRS  R+  I RR+E++ G +IA+LN+D +I II
Sbjct: 361 RTRTPMVMGLKELLENWIASQIDILQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM+  F LT+ Q +AILN+RLRSLRKLEE Q++ E D LL E+++++ LL S
Sbjct: 421 RTEDEPKPVMMDEFKLTDRQAEAILNMRLRSLRKLEEMQLRGEKDELLKEQDELEKLLGS 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ +S+ T LG RRTT  E +         AMIEKEP+TV++S +
Sbjct: 481 PARQRTRLKRDLGALRKEYSEDTALGARRTT-IEEAAPAVEFSMDAMIEKEPVTVILSQK 539

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR  K H        +KEGD+    LHA TTD++LL+  DG+ +TL A  L   RG G
Sbjct: 540 GWIRGAKGHLPLDQEFKYKEGDAPAFVLHAQTTDKLLLIGNDGRVFTLGADKLPGARGFG 599

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E ++  +D++     V+  V+    ++L+ +S G  F V    ++A TRKG+  + V   
Sbjct: 600 EPVRNTLDIDGQAQFVSVVVHSEGQEVLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGN 659

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
            K+ +   +    DHVAVVG+NRKL++F+++++P +++G+G +LQ+Y+DGG+SD   F +
Sbjct: 660 VKLVVARPIAKAHDHVAVVGDNRKLVVFNLEELPRLAKGQGNKLQNYRDGGLSDATTFTM 719

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +GL+W         R+E ++  W   RGG G L P+GFPR  KF
Sbjct: 720 EDGLSWTMGGKEGRTRTEPEMWQWKVARGGAGRLPPQGFPRDNKF 764


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/797 (31%), Positives = 405/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E +  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLKNPEATIDELIEIVPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVREMLSRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  +K  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITAIIVEELTSIKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D +     A+T D I
Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y++    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              RKG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 ALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    + +    +      RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 652 DKFVFMGTALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G        E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/772 (29%), Positives = 389/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY LI GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  + L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGA-TIYGIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   +E        IV+TEIPY V K +L+  IA+L    R+  + ++ DES
Sbjct: 240 GRGRIVVRATAEIE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++L+  +F L+ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVLLNKLFKLTALQSSFSVNCIALVNG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L+   + ++ +LN  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +  +     RRT        D     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDA-----RRTMI---KPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       ++ D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + +   ++  +  G                G   + +
Sbjct: 590 LLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F  ++I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTMGRTSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  + + Y +  + L   + KRGG G        ++G+ ++
Sbjct: 710 IVVNDPEKETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGRLVA 761



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 89/239 (37%), Gaps = 17/239 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L  A        V  +  G ++     +        + A++  EGD +      +  + +
Sbjct: 608 LNDAEFINNHYVVFATKNGTVKKTCLEAYSRPRANGVIAINIVEGDEVVDVRLTNGHNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKG 621
           ++ + +G+A       + +       ++ +     +  +V   V +   K  ++VVS +G
Sbjct: 668 IIANRNGRAVRFDENEIRTMGRTSTGVRGMRLDEGDDAVVGMIVVNDPEKETVMVVSEQG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                +  +     R GK    ++  +   ++  +  VT D  + ++ ++  ++  ++  
Sbjct: 728 YGKRSDVLDYRVTKRGGKGVKTLNITDKTGRLVAIKNVTDDNDLMIINQSGIVIRLAVAD 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRS--YNRSENDLLGWLG 731
              M R   GVRL +   K+  I+ V      E    ++   RS    +SE      +G
Sbjct: 788 CRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEASVEEESRSAWAKKSEEIENDTVG 846


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/757 (35%), Positives = 411/757 (54%), Gaps = 31/757 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ + +   +   YL YA+S I +RA+PD+RDG KPV RRI++AM EMGL   + F+KSA
Sbjct: 6   VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPH D +VYD+LVR+ QPF  RYPL+ GQGNFG++DGDSAAA RYTEA++
Sbjct: 66  GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++E +LQ +D++ VDF+  Y+ E  EPVV P+K PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+  + LIDNPE + + LLE I GPDFPTGG+I+  RE I  +Y  G+G   +RAR 
Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVIL-GREGIRAAYATGKGRVVIRART 244

Query: 257 CVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +EE+ RG  + I+VTE+PYQV K+ L+EKIAEL+ A RI  + D+RDES      ++  
Sbjct: 245 HIEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P  ++ ++F  + ++  F +NM  L  G  P+V+ L  +L+ +L HR+EV+ RR
Sbjct: 305 LKRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           +   +    RR  IL+GL IA  ++DE+I  IR        +  +++RF  TE Q +AIL
Sbjct: 365 TEHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINRFGFTEVQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++LR L  LE ++I++E  +LL E   ++ LL    +    I  E+ ++++ F      
Sbjct: 425 DMQLRRLAALERHKIENEYRDLLKEIAGLEELLADPAKILAVIREELVQLRDKFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
             RRT   +VS        + +I    + V+I+NRG+++                ++ + 
Sbjct: 482 --RRTLIQDVSG---EITDEDLIPDVSVLVMITNRGYVKRIADGTYRQQHRGGRGVTGMT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D +   + A T D +L  +  G+ + L    L        G  +  LI +   + I
Sbjct: 537 LREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTARGIPVINLIGIEPGETI 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   + S   L + +  G        +  +    G   + +   +++  V   +G 
Sbjct: 597 TALLPVRDFASARYLFMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAWVRLTSGN 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
           D + +V E  + + F    +  M R   GV     + G    VI  ++ +     +  + 
Sbjct: 657 DELILVTEQGQAIRFKETDVRPMGRPAAGVIGIRMEPG--DRVIAAEVVQPDQDLLVVSA 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +        +  RGG G    K   R+G   ++
Sbjct: 715 NGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAA 751



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 15/227 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      A L            + +  G ++  +           L A+  +EGD L  
Sbjct: 590 IEPGETITALLPVRDFASARYLFMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAW 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  D ++L++  G+A      ++   GR     I   I +     ++ A V     
Sbjct: 650 VRLTSGNDELILVTEQGQAIRFKETDVRPMGRPAAGVIG--IRMEPGDRVIAAEVVQPDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLV--VKVTGDHVAVVGENR 668
            LLVVS+ G       SE     R  +G T +K++          V    D + +V    
Sbjct: 708 DLLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAARVVTDTDSIMLVSLRG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWID 713
            ++    +QI  + R  +GV +   ++   ++ V   +  E     D
Sbjct: 768 MVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMAD 814


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/798 (32%), Positives = 414/798 (51%), Gaps = 70/798 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN +I++E+L++YI GPDFPT  + +  R+ I+++Y  GRG   +RA
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAAL-INGRKGIIDAYHTGRGKVYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L     P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVILNNLYSQTQLQTTFGINMVAL-DHGQPKLFSLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  +L+GL IA +NIDEII +I++   P+                    
Sbjct: 364 RTIYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL  
Sbjct: 424 ERAGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E++  +L S ++    I  E+  VKE F+       RRT   E++ A      + +I +
Sbjct: 484 IEELLLILGSPERLMEVIRDELYAVKEQFNDE-----RRT---EITAASHDIDLEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +       A   K+ D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L  ++ I        Y++   + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEEDERITAILPVREYEADKYVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQ---- 677
               ++       G   + +   + +  V      D + +  +  K++ F  S D+    
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKG 715

Query: 678 -IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR     +G     +     EG   +      Y +           R  
Sbjct: 716 GVRGMGRTAAGVRGMKLAEGDKVVSLIVPHNEGD-VLTVTENGYGKRTALTEYPAKSRAT 774

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +  K   R+G  + +
Sbjct: 775 QGVVSIKVSDRNGSVVGA 792



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 17/215 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E +    + +  G ++        +  S  + A++ +EGDSL   
Sbjct: 625 EEDERITAILPVREYEADKYVFMATADGTVKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKA--YTLPAGNLLSG--RGHGEAIQLL--IDLNHNQDIVTAFVY 608
              ++TD I+L S  GK   +   A     G  RG G     +  + L     +V+  V 
Sbjct: 685 DITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAEGDKVVSLIVP 744

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVV 664
            +   +L V+  G       +E  A +R   G   +KVS      +  V    GD   ++
Sbjct: 745 HNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMI 804

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
                L+   + ++  + R  +GV L    +  + 
Sbjct: 805 TNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELV 839


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/792 (32%), Positives = 423/792 (53%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  ++KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  PVV P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA +DN +I+I++L+E+I GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAI-INGRAGILEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R+ +E+  +     IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES+++   V+
Sbjct: 245 RYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + D+LM ++F L+ +ET F +NM  L  G  P+++ L   ++ ++ HRREV+ 
Sbjct: 305 IELRRGENADVLMNNLFALTPLETVFGINMVALINGE-PKLLNLKDCIECFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR---------- 420
           RR+ + ++    R  IL+G  +A  NID +IA+I+      + K  ++++          
Sbjct: 364 RRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTGM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  +IL+LRL+ L  LE  +I  E  +++ 
Sbjct: 424 LERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSIIE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++  +L + ++    I  E+  V+E F              E++ + +      +I 
Sbjct: 484 QIAELLEILQNPERLMAVIREELEAVREEFGD--------VRVTEITASKRDLTIADLIA 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+ ++         K      +A   ++ D ++  L A++ D IL  ++
Sbjct: 536 EEDMVVTLSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTS 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G  I  ++ L  N+ I T      Y +   + + + +G  
Sbjct: 596 HGKLYWLKTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTADHYVFMATRQGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   + +       G   V +   + K + F+ D +  M 
Sbjct: 656 KKTPLENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR      G    V      E    + ++ + Y +        +  RGG G +  
Sbjct: 716 RTARGVRGIRLAQGQTV-VSLIIPQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAI 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  +S+
Sbjct: 775 QCSERNGDLVSA 786



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 13/217 (5%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + + +G ++        +  S  L AL   EGD L  A        ++L S+ GKA  
Sbjct: 646 VFMATRQGTVKKTPLENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIR 705

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++  I L   Q +V+  +      +L  S KG       SE    
Sbjct: 706 FNEDDVRPMGRTARGVRG-IRLAQGQTVVSLIIPQEDAYILTASRKGYGKRTAVSEFPVY 764

Query: 635 TRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + +     + + +  V  ++GD + ++     L+    D++  + R  +GVRL
Sbjct: 765 GRGGQGVIAIQCSERNGDLVSAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRL 824

Query: 690 QSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               +   +  V      E                 D
Sbjct: 825 IRLSESEDLVGVERIAEPEEDESDFQGEEGEGVEAVD 861


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/764 (33%), Positives = 414/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L     P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVN-SRPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G    V+   + +  +
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREG--DTVVGLDVADSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L     +V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDTVVGLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +     D A +S      D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQSTTTETADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 413/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G  + D+         
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDNVVDLDVADSESED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L    ++V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDNVVDLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +    +D A ++ +  + D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQTTSAEKADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/754 (33%), Positives = 422/754 (55%), Gaps = 29/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H+++V+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLLDMLNYYIEHQKDVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++ RF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFGFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  LL   E   ++L +       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELLKMIEYYKNVLANEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT         +   ++ +I+++   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKII--QDEQEDFEEEELIQEQDTVITLTHFGYIKRLPLDTYKSQKRGGKGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  GKAY L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPEASRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TACMTVKDFKEGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCLIDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWIDSAGR 717
            + +V      ++F+ + +  M R  +GV+  + +DG    V+   K  +G   +     
Sbjct: 658 EMVLVSSGGYCVVFNENDVRVMGRSAQGVKGMTLEDG--DFVVGMEKASDGKYLLCVTEN 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            + +  +       KRG  G L  K   ++G+ +
Sbjct: 716 GFGKRSDIEEYRKTKRGAKGVLTYKVTEKTGRIV 749



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 12/193 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           KE   ++ +  G I+ +       +      A+   E D L         D ++L+S+ G
Sbjct: 607 KEGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGG 666

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++       + ++ +  L     +V          LL V+  G     +  E
Sbjct: 667 YCVVFNENDVRVMGRSAQGVKGM-TLEDGDFVVGMEKASDGKYLLCVTENGFGKRSDIEE 725

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  K  L     EK   +V +      D + +       +   + Q+P   R  +
Sbjct: 726 YRKTKRGAKGVLTYKVTEKTGRIVDIKMVNDEDEIMLCSTEGIFIRLEMSQVPVQGRNTQ 785

Query: 686 GVRLQSYKDGGIS 698
           GV+L       I 
Sbjct: 786 GVKLMRIDSDSIK 798


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 390/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGA-YIYGIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEIE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K+ +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I             ++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 ADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGSDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  T +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAETETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 85/225 (37%), Gaps = 15/225 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           TL           +  +  G ++     +        + A++  +GD +      +  + 
Sbjct: 607 TLTDETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRLTNGRNE 666

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           +++ + +G+A       + +       ++ +     + ++V     +   T  ++VVS +
Sbjct: 667 LIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGSDDEVVGMVTVNEAETETVMVVSEQ 726

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  E   ++  +  VT +  + ++ ++  ++  ++ 
Sbjct: 727 GYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGIVIRLAVA 786

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRS 718
            +  M R   GVRL +   K+  I+ V      E    ++   R+
Sbjct: 787 DVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRA 831


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G    V+   + +  +
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREG--DTVVGLDVADSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L     +V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDTVVGLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +     D A +S      D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQSTTTETADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/773 (29%), Positives = 388/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAG-RPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+    +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G  +VI 
Sbjct: 650 NDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVIG 709

Query: 703 FKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +       T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 762



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  + +G ++     +        + A++  +GD +      +  + +
Sbjct: 608 LDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTNGVIAININDGDEVVDVRLTNGHNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           ++   +G+A      N+ +       ++ + +D +   +++   V +      ++VVS +
Sbjct: 668 IIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVIGMIVVNDPVNETVMVVSEE 727

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++  S+ 
Sbjct: 728 GYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIRMSVA 787

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +   M R   GVRL +   K+  I+ V      E  + ++   R      ++ + 
Sbjct: 788 ECRVMGRATQGVRLINLAKKNDIIASVCKVMSSEMESQVEDDSREQWAKTSEEIK 842


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 420/766 (54%), Gaps = 35/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ +   +  V  +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G
Sbjct: 1   MSDQD---QSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  R  L+ G GNFG++DGDS
Sbjct: 58  ITSDKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +D++D Y+  + EPVV P++FPNLL NG SGIAV
Sbjct: 118 AAAMRYTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL  NPEI+IE+L+E+I GPDFPTG  IV     I  +Y  
Sbjct: 178 GMATNIPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIV-GISGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +R+   +E+   G   I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES
Sbjct: 237 GKGSIMIRSNARIED-HNGKPWIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R ++ ++L+ +++  + ++T F +N   L  G  PQV+ L   L  +L
Sbjct: 296 DRTGMRIVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNG-RPQVLNLKETLVHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+R V+ RR+ F ++  + R  IL+GL +A  ++DE+IA+IR     D  +  ++ +F 
Sbjct: 355 DHQRVVIRRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q  AIL++RL+ L  LE  +I++E + L+A   ++ ++L   ++    I  E+ E+
Sbjct: 415 LSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREELLEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRTT       + +   + +I ++ + + +S+ G+I+          K
Sbjct: 475 RDRFGD-----DRRTTIT---FGEDSMEDEDLIPRQNVVITVSHHGYIKRIPVSTYRSQK 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
                +  +   + D ++     ++ D +L  +  GK Y +    +        G  I  
Sbjct: 527 RGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIIN 586

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +  ++ I T      +D+   L+ ++  G +   E        + G   +K+   ++
Sbjct: 587 LLQIEKDEYISTVIPISEFDANHSLIFMTKYGVSKRTELDAFKNIRKGGLFAIKLREGDE 646

Query: 650 MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V    G    VV  +    + FS   +  M R   GV+    +     +V+   I E
Sbjct: 647 LHGVRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGVKGLRLQSE--DEVVGMDIIE 704

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +      + +           RGG G        ++G+ +S
Sbjct: 705 PDSDILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNGQLVS 750



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 16/216 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E        +  +  +     + ++  G  +  +  +        L A+  +EGD L  
Sbjct: 590 IEKDEYISTVIPISEFDANHSLIFMTKYGVSKRTELDAFKNIRKGGLFAIKLREGDELHG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 +  +++ +  G +      +  L+     G      + L    ++V   + +  
Sbjct: 650 VRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGVKG---LRLQSEDEVVGMDIIEPD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +L+V+  G        E    +R GK      +   + + + L V  +   + ++  N
Sbjct: 707 SDILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKNGQLVSLKVVGSDHDLMMITTN 766

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L+   +  I + SR  +GVRL    D      + 
Sbjct: 767 GVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVA 802



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 2/130 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  L  +  D +           IL+++ +G     P          G+ 
Sbjct: 676 VRLMGRTATGVKGLRLQSEDEVVGMDIIEPDSDILIVTENGFGKRTPIDEYRQQSRGGKG 735

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+     + N  +V+  V  S   L+++++ G    +  S+I   +R   G   +++  E
Sbjct: 736 IKTCNITDKNGQLVSLKVVGSDHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDE 795

Query: 648 EKMKLVVKVT 657
           E +  V +V 
Sbjct: 796 EFVSTVARVN 805


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/743 (51%), Positives = 514/743 (69%), Gaps = 11/743 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+ A L+L G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ +A   L+ NP+ +   LLE + GPDFPTGG+IVESR S++E+Y  GRGG R+RA+
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E+ GRG++ IVVTEIPYQV+KS L+E++A+LI +K+  LL D+RDESAED+R+VL P
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+++++P++LMES+F LS +E+RFP+N+NVL     P VM +   L  +LAHRREVL RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+  I+ R+ IL GLLIAYLN+DE+I I+R EDKPK  ++  F LT+ Q DAILN R
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTR 436

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-------IACEIREVKEIFSK 488
           LR L KLEE +I+ E   L+ E++ I ++L S  +QW         +   + ++K    K
Sbjct: 437 LRQLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDK 496

Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
               G   R+ F E  + D     +AMI +EPIT+++S RGWIR+ K    D S L FKE
Sbjct: 497 PRPTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKE 556

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD L   + A TTD++L+ S+DG+ +TL    L S RGHGE ++++I+L+    I+  F 
Sbjct: 557 GDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFP 616

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           + +  K ++ S  G  F++ E E +AN + GK  L V   E     ++  GD +AV+G+N
Sbjct: 617 FKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNV-GNEGAAFCLEAVGDQLAVIGDN 675

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            K+LIF ++++PEM RGKGV+LQ+Y++GG+ D + F    G  WID+AGR   R   +  
Sbjct: 676 GKILIFPLEELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGR--RRDWAEWK 733

Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750
            W+G+R G G LVPKGF  + +F
Sbjct: 734 EWVGRRAGAGKLVPKGFATNKRF 756


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/791 (34%), Positives = 409/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE 
Sbjct: 426 RAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+  +K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDG-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 718 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 776 VSERNGKVVGA 786



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S +GK        + S       ++  I+L     +V+  +      +
Sbjct: 686 DLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE    +R  K  + +   E+    +  V   T D + ++ +   L
Sbjct: 745 LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSIVGRNTQGVTLIRTAED 830


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSAERLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIKL--AGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L     +V+  +      +
Sbjct: 686 DLTSGKDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGEDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      E E    +R  +G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 412/762 (54%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE SI +L+  I GPDFPTG  I+     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +EE   G   I+ TEIPYQV K++LIE IAEL+  K+I  + D+RDES  +  
Sbjct: 241 VVRAKSEIEEE-NGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYIDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   ++ +       + +I++E + + ++  G+I+          +     
Sbjct: 479 DE-----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D +       T   +L  +  G+ Y L A  +     +  G  I  LI + 
Sbjct: 531 IQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 ADEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD +V  V +N   L F+   +  M R   GV+  + KD  I+  +C  I  +    
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMDIAVDEEEL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 709 LVISENGFGKRTPVSEYKIQHRGGVGLITYKISEKTGKLVGA 750



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++  G+        +R +   +  + A+  K+ D       A   + +L++S +G  
Sbjct: 658 VMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIAVCMDIAVDEEELLVISENGFG 717

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              P          G  +           +V A V     +L+++++ G A  +  S+I 
Sbjct: 718 KRTPVSEYKIQHRGGVGLITYKISEKTGKLVGATVCKVDDELMLINTNGVAIRINVSDIS 777

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKV 656
             +R   G T ++ + EEK+  + K+
Sbjct: 778 KTSRAAMGVTLMRTNEEEKIVAIAKI 803


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G    V+   + +  +
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREG--DTVVGLDVADSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L     +V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDTVVGLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +     D A +S      D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQSTTTETADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/750 (52%), Positives = 532/750 (70%), Gaps = 18/750 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L  AL ERYL+YALSTI  R++PD+RDG KPVHRR+++AMS++ L+     KKSA
Sbjct: 8   ILDKRLAEALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAMSQLRLEPTTPPKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGDQSVYD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEAR+
Sbjct: 68  RVVGDVIGKFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+VA+ +L G+DEDA DFR TY+ E  EP+V P+ FPNLLANG++GIAVGMAT+IP HNV
Sbjct: 128 TEVAKAMLAGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSAGIAVGMATNIPPHNV 187

Query: 197 QEICEAALALIDNP---------EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            EIC A   +I+            +++E+L+ +I GPDFPTGG++VESRE+I+E+YR GR
Sbjct: 188 GEICGALNLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVLVESRENILEAYRTGR 247

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G FR RARW  E + +G+W I+VT+IPYQVQKSRL+EKIAEL+  K++PLLED+RDESAE
Sbjct: 248 GAFRTRARWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAEKKLPLLEDVRDESAE 307

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKEW 364
           D+R+VL PK+R++DPD++ME +F  +D+ETRF +NMNVL       VP+VM L  +L+ +
Sbjct: 308 DIRLVLVPKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGGLVPRVMTLYEVLRAF 367

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR+EVL RRS  R+  ID R+E+L G LIAYLNIDE+I IIR ED+PK  +++RFSLT
Sbjct: 368 LEHRQEVLLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIREEDEPKRELMARFSLT 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AILN+RLRSLRKLEE++I+ E D L  E+  +  LL  G ++W  I+ E+ E+  
Sbjct: 428 DVQAEAILNMRLRSLRKLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMDR 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--DLSA 542
            F ++T LG RRT   E  + D A   +AMIE+EP+TV +S +GWIR+++ H    +++ 
Sbjct: 488 KFGRTTALGERRTLIGEPPK-DLAVPAEAMIEREPVTVFLSEKGWIRTVRGHQSAQEVAG 546

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             +K+GD  +  LHA TTDR+LL +  GK YTL    L  GRG GE ++L++DL    +I
Sbjct: 547 TKYKDGDRERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGFGEPVRLMVDLGE-AEI 605

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
           V    +    +L+V S+ G  F VE  +++A TR GK  L  +      L V   GD VA
Sbjct: 606 VALLRHQPGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLAVPAEGDAVA 665

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID--SAGRSYN 720
           V+G NRKLL+F ++++P M+RGKGV+LQ YKD  +SD+  F + EGL+W    S  ++  
Sbjct: 666 VIGNNRKLLVFKLEELPVMTRGKGVQLQKYKDASLSDLKVFALAEGLSWRMGGSGEKTRT 725

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  DL GW+  RG  G L P GFP+  +F
Sbjct: 726 VTLPDLQGWIAYRGTQGKLPPNGFPKDNRF 755


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLKNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------ 422
           + ++    R  +L+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRA 427

Query: 423 -------------------------------LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  +K  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITAIIVDELTSIKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D +     A+T D I
Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y++    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              RKG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 ALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    + +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 652 DKFVFMGTALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/759 (34%), Positives = 406/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E V  V +   + + Y+ YA+S I  RA+PD+RDG KPVHRR+++ M E+G  +   +
Sbjct: 3   TQETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+V+GK HPHGD ++YD++VR+ Q F  RYPLI GQGNFG++DGDSAAA RYT
Sbjct: 63  KKSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A+ +L  +D++ V+F   ++E   EP V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 123 EVRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALI++P I   +LL+ I GPDFPTG   +  RE I ++Y  GRG  ++
Sbjct: 183 PHNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGA-YIYGREGIKDAYLTGRGSIKI 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E G G   I+VTEIPY V K++LIE IA+L+  K++  + D+RDES  D   +
Sbjct: 242 RAKAEITEEG-GRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRI 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++L+  ++  + MET F +N   L   + P+ + L   L+ +L HR+EV+
Sbjct: 301 VIELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQ-PRTLSLKETLEYYLKHRQEVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL GLL+A  NID+ + I+R     D  K V +S++ L+E Q  
Sbjct: 360 TRRSQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSK 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E   L+     +  +L S +   + I  E+ E++  +   
Sbjct: 420 AILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGDG 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
                RRT   E   +D   + + +I  E + V ISN G+I+     +            
Sbjct: 480 -----RRTIIKE---SDGEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIM 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +  KE D +     A T D +L  +  G+ Y L    +   S +  G+AI  L+ L  N
Sbjct: 532 GMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPN 591

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        +D    L++ + +G       S      R G   + +   +++  V   
Sbjct: 592 ESVNAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTGIIAIGLDEGDELISVKLT 651

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWID 713
             G  V +   N K   FS  ++  M R   GV      +     VI  + + E  + + 
Sbjct: 652 NGGQEVLIATRNGKANRFSESEVRPMGRQAGGVIGIRLTEK--DKVIGMEVVSESASILT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +           RGG G +  K   R+G  ++
Sbjct: 710 VCENGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGVVA 748



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 14/212 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560
            A +     +++   ++ +  G I+              + A+   EGD L      +  
Sbjct: 595 NAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTGIIAIGLDEGDELISVKLTNGG 654

Query: 561 DRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
             +L+ + +GKA       +   GR  G  I   I L     ++   V   +  +L V  
Sbjct: 655 QEVLIATRNGKANRFSESEVRPMGRQAGGVIG--IRLTEKDKVIGMEVVSESASILTVCE 712

Query: 620 KGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G       SE   + R G+  +     + +   + +      D + VV  +  ++  ++
Sbjct: 713 NGFGKRTAISEYTPHHRGGQGMINIKTTLRNGGVVAIASVTDDDQLLVVTRDGIMMRINV 772

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             I E+SR  +GV++ + K    + V   K+ 
Sbjct: 773 KDISEISRNTQGVKIITLKSENDAVVGVAKLV 804


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G    V+   + +  +
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREG--DTVVGLDVADSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L     +V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDTVVGLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +    +D A ++ +  + D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQTTSAEKADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/770 (49%), Positives = 516/770 (67%), Gaps = 21/770 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +       + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ A
Sbjct: 1   MASDTPTRDEPDPFDAIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD   AFKKSAR+VG+VIGK HPHGD SVYD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 61  MRQLRLDPTGAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+T  A  ++ G+DE  VDF  TYN E+ EP +FP  FPNLLANG+
Sbjct: 121 IDGDNAAAYRYTEARLTATAARLMAGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIPSHNV EI +A L LIDNP +   +L+    GPDFPTGG++V+S  +I 
Sbjct: 181 TGIAVGMATSIPSHNVAEIVDATLMLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAIS 240

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y +G+G  RVR R+              +E++G G W +V++EIPY V K +LIE+IA
Sbjct: 241 SAYEVGKGAIRVRGRFSTGRDEAGEWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIA 300

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            LI  K++P+LED+RDES E +RIVL PK+R++DPDLL ES++ L+++E+RF LN+N+L 
Sbjct: 301 ALIADKKLPILEDVRDESDEHIRIVLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLD 360

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P V+ L  IL+EW+  + ++L RRS  R+  I  R+E+L G +IAYLN+D II II
Sbjct: 361 ARRTPGVLGLKQILQEWVIAQIDILVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEII 420

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE +++ E D LLAE++++  LL +
Sbjct: 421 RTEDEPKPVMMAEFGLTDRQAEAILNMRLRSLRKLEEMELRRERDALLAEQDELTKLLEN 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ +   T LGRRRTT  E +   +     AMIEKEP+TV++S R
Sbjct: 481 PARQRTRLKRDLAALRKEYGPDTALGRRRTTIAEAAPT-REFSMDAMIEKEPVTVILSQR 539

Query: 528 GWIRSLKSH---SVDLSA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           GWIR+ K H     D       FKEGD    A HA TTD++L+   +G+ YTL A  L  
Sbjct: 540 GWIRAAKGHVPLGTDGKGEDFKFKEGDGPAFAFHAQTTDKLLIAIDNGRFYTLGADKLPG 599

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE I+ ++D++ N  +V  F +    +LL+ ++ G  F+ E  E++A TRKG+  +
Sbjct: 600 ARGFGEPIRTVLDIDPNGQVVAIFPWRHGGQLLLAANNGRGFVAEMDELLAETRKGRGVV 659

Query: 643 KVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
                  + +V ++    DHVAVVGENRKL+IF++ ++P + +G+GV LQ YKDGG+SD 
Sbjct: 660 STKPGVHLAVVREIAPEHDHVAVVGENRKLVIFALSEMPVLGKGQGVTLQRYKDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  K+ +GL+W         R+E DLL W   RG  G L P GFPR  KF
Sbjct: 720 VTLKLEDGLSWAMGGETGRTRTEKDLLPWKVARGAAGRLPPTGFPRDNKF 769


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/804 (31%), Positives = 410/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR +++M E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ V+F   Y+  ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NPE ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLRNPEATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  +++R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTAIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKD--GGISDVICFKICEGL-------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++    I+ ++     EG        + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEETQQVIAMLVAPAETEGEGAQSVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+GK +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGKVVAA 803



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
                ++L S  GKA      ++         ++ + +L   Q ++   V  +  +    
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEETQQVIAMLVAPAETEGEGA 754

Query: 614 ------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 755 QSVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L S  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLISVGEG 847


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/791 (33%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L++YI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAI-INGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDIISAFVCHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 RAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +K  +S +     RRT   E++        + +I +E
Sbjct: 486 GELLFILENPERLMEVIREELLAIKAQYSDA-----RRT---EITENTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREYEEGLYVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               +       G   + ++  +++  V    G + V +     K++ F+ + +  M R 
Sbjct: 658 TALQDFSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFAEEAVRSMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +   +    +  R   G +  K
Sbjct: 718 ATGVRGIKL--NGEDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VSERNGNVIGA 786



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EQNERITAILPVREYEEGLYVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S +GK        + S       ++  I LN    +V+  +     ++
Sbjct: 686 DLTDGSNEVMLFSAEGKVVRFAEEAVRSMGRTATGVRG-IKLNGEDKVVSLIIPRGEGEI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVT-GDHVAVVGENRKL 670
           L V+  G      E+E    +R   G   +KVS     +   ++V   D + ++ +   L
Sbjct: 745 LTVTENGYGKRTAENEYPIKSRATQGVISIKVSERNGNVIGAIQVEPTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAED 830


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  ++E F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIREQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  + +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIKL--AGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKENAVRAMGRTATGVRG-IKLAGEDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      E E    +R  +G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEELDAIDGS 854


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/803 (32%), Positives = 413/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ E    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ 
Sbjct: 1   MRDSGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 61  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT  I +  R  I+++Y
Sbjct: 181 AVGMATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAI-INGRRGIIDAY 239

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RAR  VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 240 RTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 300 DESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +IR    P         
Sbjct: 359 AFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIS 418

Query: 417 -------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                              + LTE Q  AIL+LRL+ L  LE  
Sbjct: 419 RSWALGTVAAMLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHE 478

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E++  +L S  +    I  E+  ++ +++ +     RRT   E++  
Sbjct: 479 KLLEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYNDA-----RRT---EITEN 530

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+++          +      SA   KE D ++  L A
Sbjct: 531 TADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVA 590

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 591 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        +       G   + ++  +++  V    G + V +     K++
Sbjct: 651 YVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVV 710

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 711 RFAEDAVRAMGRTATGVRGIKLMDDDKVVSLIIPRGEGH-ILTVTENGYGKRTEEAEYPT 769

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 770 KSRATQGVISIKVSERNGHVVGA 792



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 632 EQDERITAILPVREYEEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGV 691

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              + ++ ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 692 DLTNGSNEVMLFSAQGKVVRFAEDAVRAMGRTATGVRG-IKLMDDDKVVSLIIPRGEGHI 750

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     EE+E    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 751 LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTL 810

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 811 VRTRVSEVSVVGRNTQGVTLIRTAED 836


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/765 (50%), Positives = 520/765 (67%), Gaps = 19/765 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +  +    + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++ A
Sbjct: 1   MATD-TTEPDPF--DAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ LD   AFKKSAR+VG+VIGK HPHGD SVYD++VRLAQ +  RYPL+ GQGNFGN
Sbjct: 58  MRQLKLDPAQAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGN 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EP +FP  FPNLLANG+
Sbjct: 118 IDGDNAAAYRYTEARLTKTAIQLMSGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IPSHNV EI +A L LIDNP     +L+E   GPD PTGG+IV+S   I 
Sbjct: 178 SGIAVGMATNIPSHNVAEIIDATLLLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVIS 237

Query: 241 ESYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            +Y  GRG  RVR R+              +E++G G W +VV+EIPY VQK +LIE+IA
Sbjct: 238 NAYETGRGAIRVRGRFSTGRDEAGNWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIA 297

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +LI  K++P+LEDIRDES E +R+VL PK+R++DPDLL ES++ L+D+ETRF LN+NVL 
Sbjct: 298 QLIADKKLPILEDIRDESDEQIRLVLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLD 357

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             R P V+ L  +L+EW+  + ++L RRS  R+  I  R+E+L+G +IAYLN+D II II
Sbjct: 358 SRRTPGVLGLKLVLQEWVISQIDILLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEII 417

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R ED+PKPVM++ F LT+ Q +AILN+RLRSLRKLEE +++ E D LLAE+E++  LL+S
Sbjct: 418 RTEDEPKPVMMAEFELTDRQAEAILNMRLRSLRKLEEMELRKERDALLAEQEELQKLLDS 477

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +Q  ++  ++  +++ +++ T LGRRRTT  E +   +     AMIEKEP+TV++S +
Sbjct: 478 PARQRTRLKRDLAALRKDYAEDTALGRRRTTIAEAAPT-REFSMDAMIEKEPVTVILSAK 536

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIR+ K H        FKEGD    ALH  TTD++L+   +G+ YTL A  L   RG G
Sbjct: 537 GWIRAAKGHVPLDGDFKFKEGDGPAFALHCQTTDKLLVAVDNGRFYTLGADKLPGARGFG 596

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           E I+ ++D++ +  IV+   Y    +LL+ ++ G  F  E  E++A TRKG+  +     
Sbjct: 597 EPIRTMVDIDPDAQIVSVLPYKPKGQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPG 656

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
            K+ +V ++    DHVAV+GENRKL+IF++ ++P +++G+GV LQ YKDG +SDVI  ++
Sbjct: 657 VKLAVVREIAPEHDHVAVIGENRKLVIFALSEVPLLAKGQGVTLQRYKDGEMSDVITLRL 716

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +GLTW         R E DLL W   RG  G L P GFPR  +F
Sbjct: 717 EDGLTWAMGGESGRTRVEKDLLPWKVARGAAGRLPPNGFPRDNRF 761


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/751 (33%), Positives = 404/751 (53%), Gaps = 29/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + L   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E G      + KS
Sbjct: 7   KVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG+V+G+ HPHGD ++YD+ VRLAQ F  RY LI G GNFG+IDGD AAA RYTE R
Sbjct: 67  AGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   IL  +D++ VDF+  Y+++  EP V PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MAKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + +I+NP+ ++E L+  + GPDFPTG +I+  RE I ++Y  GRG   +RA+
Sbjct: 187 LAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIM-GREGIRQAYTTGRGSIIMRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++      I+V EIPYQV KS+L+E+IAEL+  KR+  + D+RDES      ++  
Sbjct: 246 ARIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P +++  +F  + M+  F + M  L  G VP+V+ L  +L  +L H+++V+ RR
Sbjct: 306 LRRDVNPQIVLNQLFKYTQMQETFGVIMLALVDG-VPKVLNLRDMLYYYLEHQKDVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NID II II   R+ED+ +P+++  F+L+E Q  AIL
Sbjct: 365 TRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILMGEFNLSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E   LL+      ++L+S K   + I  EI E+KE F+     
Sbjct: 425 DMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEKMVLDIIKKEISEIKEKFADP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E++ +      + +I +E   + I++ G+I+          +     ++ + 
Sbjct: 482 --RRT---EITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNTYKAQRRGGRGVTGMG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++      T   +L  +  GK Y L    +   S    G AI  L+ +  ++ +
Sbjct: 537 TKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKGTAIVNLLAITGDEKV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   + +   L   +  G              ++G   L +   +++  V    G 
Sbjct: 597 NAVIPVKEFAADQYLFTATRSGIVKKTSLQHYDTVRKEGLIALTLDEGDELIGVKLTDGK 656

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +   N   + F+   + EM R  +GV+      G    V    + +    +     
Sbjct: 657 SDILLATRNGMAVRFNETNVREMGRTARGVKGIELTQGDFV-VALDAVKDDDELLMITEL 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              +           RGG G L  +   ++G
Sbjct: 716 GMGKRTPLSEYRKQNRGGKGILAMRLTNKTG 746



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A +       +      +  G ++       D      L AL   EGD L  
Sbjct: 590 ITGDEKVNAVIPVKEFAADQYLFTATRSGIVKKTSLQHYDTVRKEGLIALTLDEGDELIG 649

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    ILL + +G A      N+         ++  I+L     +V         +
Sbjct: 650 VKLTDGKSDILLATRNGMAVRFNETNVREMGRTARGVKG-IELTQGDFVVALDAVKDDDE 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           LL+++  G       SE     R GK    ++++++  +   +KV   GD + V+     
Sbjct: 709 LLMITELGMGKRTPLSEYRKQNRGGKGILAMRLTNKTGLMAGIKVVRPGDELMVISAEGV 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           ++  ++D+I  +SR  +GV +           + 
Sbjct: 769 IIRLNVDEINVLSRVTQGVSIMRMNANDKVVALA 802


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 416/755 (55%), Gaps = 32/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V + F +   ++ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      KKSA
Sbjct: 17  VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 76

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGD AAA RYTEAR+
Sbjct: 77  RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 136

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L+ ++++ +D+   Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 137 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 196

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LI+NP+++  +L+  I GPDFPTG  I+  RE I ++Y  GRG   +RA+ 
Sbjct: 197 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 255

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV      I+V E+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++   
Sbjct: 256 TIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R ++P++++ ++F  + +++ F +    L  G  P+V+ L  +L  +L H+R V+ RR+
Sbjct: 315 RRDVNPNVVLNNLFKHTALQSNFGIINIALVNGE-PKVLNLKEMLYYYLEHQRVVIRRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + ++  + R  IL+GL IA  ++DE+IA+IR+    D  +  ++ +F L+ +Q  AIL+
Sbjct: 374 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 433

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L+A+  ++ ++L   +     I+ E+++++  +       
Sbjct: 434 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 489

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E++  + A   + +I +E + + I++ G+++          +     +  +  
Sbjct: 490 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 545

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K  D ++     ++   ++  +  GK Y L A  +        G  I  LI +   + + 
Sbjct: 546 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPELGRTARGTPIINLIQIEQGETVN 605

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                  ++S   L   + +G        +     + G   + +  ++++  V    G+ 
Sbjct: 606 AVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGVKLTDGNC 665

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGR 717
           ++ +       + F    +  M R   GV+     +     VI   I  E  T +    +
Sbjct: 666 NIIMGTRQGMSIHFPERDVRSMGRAATGVKGIHISED--DAVIDMDIVDENNTVLIVTSK 723

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +        +  RGG G        ++G  + 
Sbjct: 724 GFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVG 758



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 12/216 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A +     E        + +G ++              L A++ +E D L
Sbjct: 596 IQIEQGETVNAVIPIESFESGHFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRL 655

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++ +  G +   P  ++ S       ++  I ++ +  ++   + D  
Sbjct: 656 IGVKLTDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGVKG-IHISEDDAVIDMDIVDEN 714

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGEN 667
             +L+V+SKG       SE    TR GK    +     +   + L V    + + ++  +
Sbjct: 715 NTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKNGPVVGLKVVEEDEDLMIITAS 774

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  S+  I  M R  +GVRL + ++      + 
Sbjct: 775 GTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVT 810



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   +  +  +H  E D++         + +L++++ G     P          G+ 
Sbjct: 684 VRSMGRAATGVKGIHISEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKG 743

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSE 647
           I+ L   + N  +V   V +    L+++++ G       S   I+    +G   +    +
Sbjct: 744 IKTLNVTSKNGPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTRED 803

Query: 648 EKMKLVVKV 656
           +++  V +V
Sbjct: 804 DEVATVTRV 812


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/764 (32%), Positives = 416/764 (54%), Gaps = 35/764 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
               +  + +   + + Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G+     +
Sbjct: 3   TNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+V+GK HPHGD SVY ++V++AQ F  R  L+ GQGNFG++DGDS AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF   ++E   EP+V P+++PNLL NG++GIAVGMATSIP
Sbjct: 123 EARMSKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +  IDN +  +++LL+Y+ GPDFPT   IV   + I ++Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIV-GYDGIKQAYKTGRGKVKV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+ +G   IVVTEIPYQV K+RL+EKIA+L+  K++  + D+RDE+  +   +
Sbjct: 242 RAKAEIEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++ +++  S +E  F + M  +  G  P+++ L  +L  +L H+++V+
Sbjct: 302 VIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDG-TPKILNLKQVLGYYLDHQKDVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NID +I+IIR+       K  ++  F+L+E Q  
Sbjct: 361 TRRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQAQ 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I  E  +L+A  E ++S+L    +    I  E+  +K      
Sbjct: 421 AILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIKAKHEDP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + + E+E + + +++ G+I+          K     ++
Sbjct: 481 -----RRTQIIPAEG---EFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGIA 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
           AL  +E D ++  +   T   IL  +  G+ Y L A  +  G+    G AI  L+ LN  
Sbjct: 533 ALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPG 592

Query: 600 QDIVTAFVYDST-------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + +     ++S          LL+ +  G     + SE     + G   + +   +++  
Sbjct: 593 EKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLIAINLKDGDELIG 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGL 709
           V    G+  V +V EN   + F+   +  M R   GV+  +        V+    I EG 
Sbjct: 653 VNMTDGNQEVVLVTENAMSIRFNEADVRPMGRTATGVKGITL--SKDDRVVSMNLIGEGD 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   + +  +        RGG G        ++GK + S
Sbjct: 711 NLLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNITSKTGKIVGS 754



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 72/211 (34%), Gaps = 12/211 (5%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
                  +    ++ +  G ++  +           L A++ K+GD L           +
Sbjct: 603 SDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLIAINLKDGDELIGVNMTDGNQEV 662

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L++ +  +      ++         ++  I L+ +  +V+  +      LLVVS  G  
Sbjct: 663 VLVTENAMSIRFNEADVRPMGRTATGVKG-ITLSKDDRVVSMNLIGEGDNLLVVSQNGFG 721

Query: 624 FIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
              +  E     R GK      +   + + +   +    D + ++  N  L+   +++I 
Sbjct: 722 KRSDVEEYRPQIRGGKGIKTYNITSKTGKIVGSSLVNEDDEMMMINSNGVLIRIRVNEIS 781

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              R   GV+L    +      I     E +
Sbjct: 782 IFGRITSGVKLMRTDEEVEVVSIAKIKAEDI 812


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 420/758 (55%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E N+  V+L   +   +L YA+S I  RAIPD+RDG KPVHRRI++AM ++G+    A+K
Sbjct: 6   ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +DF+D Y+  + EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +  LAL  +P+I+I++L+EYI GPDFPT G+IV  R  I  +Y  GRG   +R
Sbjct: 186 HQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIV-GRSGIRRAYETGRGSITLR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E+   G   I+VTE+PYQV K++LIE+IAEL+  KRI  + D+RDES  +   ++
Sbjct: 245 ARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + M+T F +N+  L  G+ P+V+ L   LK +L H+ EV+ 
Sbjct: 305 IEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQ-PKVLNLKQALKFYLDHQEEVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR++F ++  + R  IL+GL IA  +ID II +IR+    D  +  ++ +FSL+E Q  A
Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFSLSEKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEIKERFNDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     S        + +I +E I + +++ G+I+          K     +  
Sbjct: 483 ----RRTEIIAASV--DQIEDEDLIPQESIAITLTHNGYIKRLPISTYRSQKRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  L   T D IL  +  GK Y      +        G  I  L++++ ++
Sbjct: 537 MGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGRTAKGIPIVNLLEIDKDE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T      +     L   + KG +     +E       G   + +  E+++  V    
Sbjct: 597 WINTMIRVEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDELISVKLTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G   + +  +N  L+ F    +  M R   GV+  +    G  +V+  +I  E    +  
Sbjct: 657 GHKDIIIGTKNGMLIRFPETDVRSMGRSATGVKGITL--SGDDEVVGMEILEENDDVLIV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        +  RGG G        ++G  ++
Sbjct: 715 TKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLVA 752



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             +        ++     ++      + +G  +           +  L A+H KE D L 
Sbjct: 591 EIDKDEWINTMIRVEDFVEDWFLFFTTKKGISKRTPVTEFANIRTNGLIAIHLKEEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     I++ + +G     P  ++ S       ++  I L+ + ++V   + +   
Sbjct: 651 SVKLTDGHKDIIIGTKNGMLIRFPETDVRSMGRSATGVKG-ITLSGDDEVVGMEILEEND 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G     + SE    +R GK        S    +  V  VTG+  + ++    
Sbjct: 710 DVLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKNGPLVAVKTVTGEEDIMLITAGG 769

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            L+  ++  I  + R   GV+L    D      + 
Sbjct: 770 VLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVA 804


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/797 (31%), Positives = 400/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP  +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPGATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE I II+    P   K  ++ R              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVREMLARA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/753 (33%), Positives = 419/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQE--QETVITLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  K   ++G+ +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYKVTDKTGRIV 749



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 13/232 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSL---- 533
           +R  +         G       ++ + +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +      A+   + DSL         D I+L+S++G        ++ S     + ++
Sbjct: 628 FENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRTAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     +K  
Sbjct: 688 GM-TLEDGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +V +      D + +       +   + QIP   R  +GV+L       I 
Sbjct: 747 RIVDIKMVNDEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIK 798


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 406/773 (52%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + ++ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ + +EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+       EK +E++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGN-RTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +++ F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     ++ +  +
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S   + + Q DAIL ++LR L  LE  +I +EL+ L      +  +L S ++Q   +  
Sbjct: 418 MSLLDVDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDILASPERQRAIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ E +        RR+       A     ++ +I +E + V I++ G+        
Sbjct: 478 ELAEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVVTITSTGYAKRTKVDA 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ +++G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEERIAQVIQIQTYEDAPYLVLATAQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  +++     V  GD + +  E  + + F+ D   +  M R   GV+   +++G     
Sbjct: 650 NDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRFREGDQLLA 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + +G   + +    Y +           RGG+G +  K  P+ G+ + +
Sbjct: 710 MSV-VRDGEFLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYTPKRGRLIGA 761



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  +GD L  A
Sbjct: 599 QPEERIAQVIQIQTYEDAPYLVLATAQGRVKKSRLTDYESARSAGLIAINLNDGDRLIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +       ++   V     
Sbjct: 659 ALVDEGDDILLTSEYGQAIRFTADD-EQLRPMGRATAGVKGMRFREGDQLLAMSVVRDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G       SE     R G   +         ++   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYTPKRGRLIGALAVEEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            ++   ++QI   SR   GVRL + +D      I
Sbjct: 778 GVIRTEVNQIRPSSRATMGVRLVNLQDDVELLAI 811


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/753 (33%), Positives = 418/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL
Sbjct: 365 TRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQE--QETVITLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EIVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  K   ++GK +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 13/232 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSL---- 533
           +R  +         G       ++ + +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +      A+   + DSL         D I+L+S++G        ++       + ++
Sbjct: 628 FENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVMGRSAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     +K  
Sbjct: 688 GM-TLEDGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +V +      D + +       +   + Q+P   R  +GV+L     G I 
Sbjct: 747 KIVDIKMVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIK 798


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/820 (31%), Positives = 406/820 (49%), Gaps = 88/820 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L+E+I GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K++LIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +     RRT     +  +     + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDA-----RRTVI---NANEIDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSN 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ-- 677
           G       +        G   + +   +++  V    GD  + +     K++ F   +  
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEV 711

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
                                  +  M RG  GVR    ++G     +     +G   + 
Sbjct: 712 AVLDENGNAVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKGDGA-ILT 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +           R   G +  K   R+G  + +
Sbjct: 771 VTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQLL-- 593
           +  D I+L S +GK      G                           R  G     +  
Sbjct: 688 NGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNAVLDEEGNPQINFKGVRPMGRGATGVRG 747

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q +V+  V      +L V+  G     E SE  + +R  K  + +     +   
Sbjct: 748 IKLEEGQRVVSLIVPKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAV 807

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +  V     D + ++ +   L+    + +  + R  +GV +  
Sbjct: 808 VGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQGVTIIR 850


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 391/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN++E+ +   A IDNP+I ++ L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGA-YIYGIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEIE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +      +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K+ +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I            +++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 ADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  T +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAETETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 85/225 (37%), Gaps = 15/225 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           TL   +       +  +  G ++     +        + A++  +GD +      +  + 
Sbjct: 607 TLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRLTNGRNE 666

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           +++ + +G+A       + +       ++ +     + ++V     +   T  ++VVS +
Sbjct: 667 LIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGMVTVNEAETETVMVVSEQ 726

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  E   ++  +  VT +  + ++ ++  ++   + 
Sbjct: 727 GYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGIVIRLVVA 786

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRS 718
            +  M R   GVRL +   K+  I+ V      E    ++   R+
Sbjct: 787 DVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRA 831


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/792 (33%), Positives = 417/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+  A+KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALIDNP++++++L+E+I GPDFPT GI +  R  IVE+YR GRG   +RA
Sbjct: 186 NLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGI-INGRAGIVEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E+  + G   I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   V+
Sbjct: 245 RHEIEQDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ ++F  + +ET F +NM  L  G  P+ + L  +L  ++ HRREV+ 
Sbjct: 305 IELRRGENPDVIINNLFAQTQLETVFGINMVALINGE-PKTLNLKEMLDAFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+ + ++    R  IL+GL +A  NIDEII +I+                         
Sbjct: 364 RRTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLAM 423

Query: 423 --------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     L+  Q  AIL+LRL  L  LE  ++++E   +L 
Sbjct: 424 LERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +   +  +L   ++    I  E+ E+   +        RRT   E++ + +      +I+
Sbjct: 484 KIADLLDILGDPERLMQVIRDELAEIVSQYGDE-----RRT---EITSSRRDLTIADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS+ G+ ++         +      +A   K+ D ++  L A++ D IL  S 
Sbjct: 536 EEDLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSN 595

Query: 569 DGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVT---AFVYDSTCKLLVVSSKGNA 623
            GK Y L    +  G     G  +  ++ L+  + I T      Y     +L+ +S G  
Sbjct: 596 KGKVYWLRVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   + +       G   V +     K + F  +Q+  MS
Sbjct: 656 KKTPLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR     +G    V      EG   + ++   Y +           RG  G +  
Sbjct: 716 RTARGVRGIKMPEGHHV-VSLIIPQEGGVILTASEHGYGKRTAIDEFPAYSRGSQGVIAM 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  +++
Sbjct: 775 QCSERNGNLVTA 786



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++   ++ ++ G ++        +  S  L AL+  EGD+L  A     +  ++L S+
Sbjct: 640 YPEDQFVLMATSAGVVKKTPLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSS 699

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA       +         ++  I +     +V+  +      +L  S  G       
Sbjct: 700 AGKAVRFQEEQVRPMSRTARGVRG-IKMPEGHHVVSLIIPQEGGVILTASEHGYGKRTAI 758

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E  A +R  +  + +     +   +  +    GD + ++ +   L+    D++  +SR 
Sbjct: 759 DEFPAYSRGSQGVIAMQCSERNGNLVTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRN 818

Query: 684 GKGVRLQSYKDGGISDVICFKIC 706
            +GVRL          V   +I 
Sbjct: 819 TQGVRLIRLAQEDERLVGVERIA 841


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+++  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  D  K  M     RF LTE 
Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++G  +  L+ FS   +  + R   GV+  S ++G    V+   + +  +
Sbjct: 654 VRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREG--DTVVGLDVADSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 80/243 (32%), Gaps = 16/243 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--L 614
               + IL+ +            L         ++  I L     +V   V DS  +  +
Sbjct: 657 TTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKG-ISLREGDTVVGLDVADSESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSENDLL 727
           +   +  I +  R   GVRL    DG     +    +  +     D A +S      D+ 
Sbjct: 776 IRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQSTTTETADVE 835

Query: 728 GWL 730
             +
Sbjct: 836 EVV 838


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/791 (34%), Positives = 409/791 (51%), Gaps = 67/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  IS+E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L     P++MPL  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVAL-HQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  +E  ++  E   LLAE 
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LNS ++    I  E+   K  +S       RRT   E++        + +I +E
Sbjct: 486 AELLYILNSPERLMEVIREELEAFKTQYSDE-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E  +    G   + ++  +++  V    G D   +     K++ FS   +  M R 
Sbjct: 658 TALTEF-SRHVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMGRT 716

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR  + +  G   V+   I  G    +      + +           R   G +  K
Sbjct: 717 ATGVRGINLQ--GEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIK 774

Query: 743 GFPRSGKFLSS 753
              R+GK + +
Sbjct: 775 VSERNGKVVGA 785



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 11/205 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFKEGDSLKIAL 555
           E      A L     E+     + +  G ++         H   + A++  EGD L    
Sbjct: 626 EADERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRHVSGIIAVNLNEGDELIGVD 685

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
               +D  +L S +GK        + S       ++  I+L     +V+  +      +L
Sbjct: 686 LTDGSDEAMLFSAEGKVVRFSEQAVRSMGRTATGVRG-INLQGEDRVVSLIIPRGEGDIL 744

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLL 671
            V+  G       SE    +R  K  + +   E+    +  V     D + ++ +   L+
Sbjct: 745 TVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQVDAADQIMMITDAGTLV 804

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDG 695
              + ++  + R  +GV L    + 
Sbjct: 805 RTRVSEVSIVGRNTQGVTLIRTAED 829


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/761 (35%), Positives = 427/761 (56%), Gaps = 34/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +K
Sbjct: 6   ESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG   +R
Sbjct: 186 HNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E  G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++      V
Sbjct: 245 AKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +  +++ +++  + ++T F +NM  L  G  PQ++ L   L  +L H++EV+
Sbjct: 305 VIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPQLINLKQALYHYLEHQKEVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++    R  IL+GL IA  +IDEII IIR  +  K  M    SRF+L+E Q  
Sbjct: 364 RRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+ E ++L+A   +++++L   ++    +  E+ E+KE F   
Sbjct: 424 AILDMRLRRLTGLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF--- 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G  R T  ++   D+    + +I +E I + +S+  +I+                + 
Sbjct: 481 ---GDDRRTEIQLGGIDQ-LEDEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQ 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            ++  + D +   +   T D++L  +  G+ Y L    +   S +  G  I  +I+L+ +
Sbjct: 537 GMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQD 596

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T             L+ V+ KG       S      R GK  +K   ++++  V  
Sbjct: 597 EVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--- 710
             G+ H+ +      L+ F    +  MSR   GV+    +DG   +VI   + +      
Sbjct: 657 TDGEKHILIGTAQASLIRFKEADVRAMSRIAAGVKGIRLRDG--DEVIGLDVADDDNQDK 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +    + Y +  +     L  RGG+G    K   R+G+ +
Sbjct: 715 ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLV 755



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V ++ +G I+     +          A+ F++ D L
Sbjct: 592 ELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      IL+ +           ++ +       ++  I L    +++   V D  
Sbjct: 652 IAVRLTDGEKHILIGTAQASLIRFKEADVRAMSRIAAGVKG-IRLRDGDEVIGLDVADDD 710

Query: 612 --CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVG 665
              K+LVV+ KG        +   + R G         E   ++  +  V GD  + VV 
Sbjct: 711 NQDKILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVT 770

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               ++   +  I    R  +GVRL    +      + 
Sbjct: 771 NQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVA 808



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAH--TTDRILLLSTDG--KAYTLPAGNLLSGRG 585
           +R++   +  +  +  ++GD +     A     D+IL+++  G  K  ++    L +  G
Sbjct: 680 VRAMSRIAAGVKGIRLRDGDEVIGLDVADDDNQDKILVVTEKGYGKRTSIEDYRLSNRGG 739

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLK 643
            G     L     N  +V     +    L+VV+++G    +E S I  N R  +G   ++
Sbjct: 740 MGVKTAKLT--ERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIR 797

Query: 644 VSSEEKMKLVVKVTGD 659
           +  E+ +  V KV  +
Sbjct: 798 LDEEQYVSTVAKVKKE 813


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/773 (30%), Positives = 390/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E ++  +++D VD  + +++  SEP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ E L+++I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E  G     IVVTEIPY V K++LIE IA+L+   R+  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-AGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNG-RPRLLNLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNPERCKEVMKEELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  + +G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +     ++ V+ KG                G   + +
Sbjct: 590 MLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G D + +   N +   F    +  M R   GVR     D    +VI 
Sbjct: 650 NESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTMGRVSTGVRGMKLDDDCEDEVIG 709

Query: 703 F---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  E  T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MVVVNDAENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V ++ +G ++     +        + A++  E D +      +  D +++ + +G
Sbjct: 615 DKHYVVFVTKKGLVKKTSLRAYSRPRTNGVIAININESDEVVDVRLTNGNDELIIANRNG 674

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVE 627
           +A      ++ +       ++ + +D +   +++   V +      ++VVS +G      
Sbjct: 675 RACRFHEKHVRTMGRVSTGVRGMKLDDDCEDEVIGMVVVNDAENETVMVVSEEGYGKRSL 734

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             +     R GK    ++  EK   +  +  VT D  + ++ ++  ++  ++ +   M R
Sbjct: 735 VDDYRLTNRGGKGVKTLNITEKTGKLVAIKTVTDDNDLMIINKSGIVIRMAVAKCRVMGR 794

Query: 684 GK-GVRLQSY--KDGGISDV 700
              GVRL +   K+  I+ V
Sbjct: 795 ATQGVRLINLSKKNDTIASV 814


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/797 (32%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFIFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + ++ EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/799 (31%), Positives = 414/799 (51%), Gaps = 64/799 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+
Sbjct: 2   TDNLFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD +VYD++VRLAQ F  RYPL+ GQGNFG++DGD+AAA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT GI +     + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGI-IYGTAGVKEGYRTGRG 240

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR   E +G+G    I+V EIPYQV K+RL+E+I+EL+  K+I  + D+RDES +
Sbjct: 241 RVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   P++++  +F ++ ++  F +NM  L  G+ P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---- 420
           RREV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+  + P   K  +++R    
Sbjct: 360 RREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRS 419

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + L++ Q  AIL++RL+ L  LE+ +I  E
Sbjct: 420 SLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQDKIVGE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              ++     +  +L   ++    I  E+  ++  F        RR+   E+        
Sbjct: 480 YREIMDVILDLLDILAKPERISQIIGEELTAIRAQFGDP-----RRS---EIEPYGGDIN 531

Query: 511 QQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V IS+ G+I+        S +       A   K+ D ++    A+T D 
Sbjct: 532 IEDLITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDY 591

Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  S+ G+ Y     +L  G  +  G+ +  ++ L   + I        +     + + 
Sbjct: 592 VLCFSSRGRCYWRKVYDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKEFRDDQFVFMC 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           ++ G        +       G   + +   + +  V    GD  + +  +  K + FS  
Sbjct: 652 TANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSET 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR     D      +     E    + ++   Y +           RG 
Sbjct: 712 DVRPMGRNATGVRGMMLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGT 771

Query: 736 VGSLVPKGFPRSG-KFLSS 753
            G +      ++G K +++
Sbjct: 772 QGVIAMDLTDKTGLKLVAA 790



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 83/208 (39%), Gaps = 14/208 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++        +  +  + A++  +GD+L   
Sbjct: 628 EEGEKINALLPVKEFRDDQFVFMCTANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGV 687

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              H  D+I+L S  GKA      ++     +   ++ ++ L  +  +++  V +S  ++
Sbjct: 688 ALTHGDDQIMLFSDAGKAVRFSETDVRPMGRNATGVRGMM-LGDDHQVISLLVSNSEQQM 746

Query: 615 LV-VSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668
           ++  S  G        +    +R  +G   + ++ +  +KLV        D + ++    
Sbjct: 747 VLTASDGGYGKRTCVGDFRRTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDIMLITTGG 806

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            L+   + ++ E  R  +GVRL +  +G
Sbjct: 807 VLIRTKVAEVRETGRSAQGVRLINLDEG 834


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/764 (34%), Positives = 418/764 (54%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +++L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  L L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLIL-GKSGIRRAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
             ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL   KRI  + D+RDE++  
Sbjct: 241 SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    +  + ++++ +++  + ++T F +NM  L  G  P+++ L   L E+L H
Sbjct: 301 TGVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALVNG-RPKLINLKEALVEYLEH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLT 424
           ++ V+ RR+ + ++    R  IL+GL IA  +IDEII+IIR  D  K  M     RF L+
Sbjct: 360 QKTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RLR L  LE  +I++E + LL+   +++ +L + +     +  E+ E+KE
Sbjct: 420 ERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G  R T  ++   D     + +I +E I + +S+  +I+             
Sbjct: 480 RF------GDERRTEIQLGGLDH-LEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I
Sbjct: 533 GRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAI 592

Query: 595 DLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +L +++ I T        D    L+  + KG       S      + GK  +    ++++
Sbjct: 593 ELENDEVISTMIAVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKEDDEL 652

Query: 651 KLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICE 707
             V    G    ++G  +  L+ F  + +  + R   GVR  S ++   +  +       
Sbjct: 653 IAVRLTDGKQDILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +    + Y +        L  RGG G    K   R+G  +
Sbjct: 713 EDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVV 756



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 14/217 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + + ++    V  + +G ++     +          A+ FKE D L     
Sbjct: 598 EVISTMIAVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRL 657

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
                 ILL +        P  +L         ++  I L  N  +V   V   +S  ++
Sbjct: 658 TDGKQDILLGTAHASLIRFPENSLRPLGRTASGVRG-ISLRENDVVVGLDVAYAESEDEV 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENRKL 670
           LVV+ KG       SE   + R GK        E+   VV +T     + + +V +   +
Sbjct: 717 LVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIVTDGGII 776

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           +   ++ I +  R   GVRL    D      +   I 
Sbjct: 777 IRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVID 813


>gi|332284745|ref|YP_004416656.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
 gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/789 (32%), Positives = 402/789 (50%), Gaps = 67/789 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE R+ ++A  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ E  L 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
            + NP+ SIE+L+E I  PDFPTGGI +     + E YR GRG   +RA+   E++ +G 
Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGI-IYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGN 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V  +PYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    R   P++
Sbjct: 240 RQAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  I++ +L HRREV+ RR+ F+++   
Sbjct: 300 ILNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLKQIVEYFLFHRREVVTRRTVFQLRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NID+ I II+    P   +  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPG 418

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+E Q   ILN+RL+ L  LE+ +I  E  +++    
Sbjct: 419 GRAAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIA 478

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I+ E+  +K  FS S    RR     E+         + +I    
Sbjct: 479 DLLDILARPERITAIISDELLAIKAEFSTSAKDTRRS----EIEHNATELDTEDLITPMD 534

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S  G+I+S         K       A   KE D +     A+T D +L  S  G+
Sbjct: 535 MVVTLSQTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGR 594

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    +   S    G  I  +  L  ++ I        +     + + +S+G     
Sbjct: 595 VYWLKVWEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDHYVFMATSRGTVKKT 654

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
             S+     + G   + +   + +       G H V +  ++ K + F  + +  M R  
Sbjct: 655 PLSDFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPMGRTA 714

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    ++G +   +     E  + + +    + +  + +      RG  G +  +  
Sbjct: 715 RGVRGMMLEEGQVVIAMLVAGDETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTS 774

Query: 745 PRSGKFLSS 753
            R+GK + +
Sbjct: 775 ARNGKVVGA 783



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 17/226 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                  L      ++    + ++RG ++              + A+   + D L  A  
Sbjct: 624 DEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVALDDNDFLIGADL 683

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLL 615
                 ++L S  GKA      ++         ++ ++ L   Q ++   V  D T  +L
Sbjct: 684 TDGAHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGMM-LEEGQVVIAMLVAGDETQSVL 742

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLL 671
             +  G        E   + R  K  + +     + + +  V+    D + ++     L+
Sbjct: 743 TATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARNGKVVGAVLVRPSDEIMLITTGGVLV 802

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKD----GGISDVICFKICEGLTWI 712
              + +I EM R   GV L S  D     G+  V+     + +  +
Sbjct: 803 RTRVSEIREMGRATQGVTLISVDDNSMLSGVRRVVESDADDDVEVL 848


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 407/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGG-YIYGISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L  G  P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNG-RPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  D G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 14/199 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           +L           +  +  G I+              ++A+  +E D +      +  + 
Sbjct: 602 SLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNE 661

Query: 563 ILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSS 619
           I++ + +G+A      A  ++     G     L D   ++ I    + D  T  ++VVS 
Sbjct: 662 IIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMVVSE 721

Query: 620 KGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
           +G     +  +     R GK    + ++ +  K+  +  VT +  + ++ ++   +   +
Sbjct: 722 QGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKV 781

Query: 676 DQIPEMSRGK-GVRLQSYK 693
             +  M R   GVRL + +
Sbjct: 782 ADVRIMGRATQGVRLINLE 800


>gi|332527566|ref|ZP_08403613.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/812 (30%), Positives = 404/812 (49%), Gaps = 85/812 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L+ +D++ VDF   Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A L L+  PE +IE+L+E +  PDFPT GI +   E + E YR GRG   +RA+   
Sbjct: 190 IVDACLHLLKVPEATIEELMEIVPAPDFPTAGI-IYGLEGVREGYRTGRGRVVMRAKCHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V EIPYQV K  L+E+IAEL+  K+I  +  I+DES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P++  L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PRLCNLKQLLDIFLEHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE I  I+    P   K  ++S+              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E+Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 EESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++++   +  +L   ++    +  E+  +++ F ++  +G RR+      R       + 
Sbjct: 488 VMSQIADLLDILARPERVTAILVEELNALRQEFGQA-KVGARRSVI---ERNALELGTED 543

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +S+ G+I+S         +       A   K+ D +     A+T D IL 
Sbjct: 544 LITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILC 603

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLV 616
            S  G+ Y L    +   S    G+ I  +  L   + I            + +   + +
Sbjct: 604 FSDRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVFM 663

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI 675
            ++ G        E     + G   + +   + +       G H V +  +  K + F  
Sbjct: 664 STALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFDE 723

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-------------GLTWIDSAGRSYNR 721
           D +  M R  +GVR  + + G   +VI   + +              ++ + +    + +
Sbjct: 724 DDVRPMGRNARGVRGMALEPG--QNVIAMLVSDRGDEARDVGEDSTRVSVLTATENGFGK 781

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      RG  G +  +   R+GK +++
Sbjct: 782 RTPIGEYTRHGRGTKGMIAIQQSERNGKVVAA 813



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 24/205 (11%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + +  G ++              + A+   EGD L  A        ++L S 
Sbjct: 655 FPADHYVFMSTALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSD 714

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------------LLV 616
            GKA      ++     +   ++ +  L   Q+++   V D   +            +L 
Sbjct: 715 GGKAVRFDEDDVRPMGRNARGVRGMA-LEPGQNVIAMLVSDRGDEARDVGEDSTRVSVLT 773

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLI 672
            +  G        E   + R  K  + +   E+   VV  T     D + ++ +   L+ 
Sbjct: 774 ATENGFGKRTPIGEYTRHGRGTKGMIAIQQSERNGKVVAATLVRETDEIMLITDRGVLVR 833

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGG 696
             + +I EM R   GV L +  DG 
Sbjct: 834 TRVAEIREMGRATQGVTLIALDDGA 858


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/762 (33%), Positives = 410/762 (53%), Gaps = 32/762 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  + +V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M  +GL    
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M ++A  +L+ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  + LIDNPE S+ +L+  I GPDFPTG  I+     I  +Y  GRG  
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE   G   I+ TEIPYQV K+RLIE IAEL+  K+I  + D+RDES  D  
Sbjct: 241 VIRAKSNIEEE-NGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +P++++  ++  + ++  F + M  L      +V+ L  +L  ++  ++E
Sbjct: 300 RIVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNET-KVLNLKEVLVHYVDFQKE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F +   + R  IL+GL IA  NID +I+IIRN       K  ++  F+L+E Q
Sbjct: 359 VITRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFALSEKQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL ++LR L  LE  +I  E + LL + E + S+L S ++    I  E+ E+K  + 
Sbjct: 419 SQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLEVIKNELLEIKAKY- 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                G  R T  E          + +I++E + + ++  G+I+          +     
Sbjct: 478 -----GDERRTSIEQD--MNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           + A+  KE D +   +   T   +L  +  G+ Y L A  +     +  G  I  LI + 
Sbjct: 531 IQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIE 590

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I T            L + + +G       +E     + G   + +   +++  V 
Sbjct: 591 PDEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLKVK 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              GD +V  V +N   L F+   +  M R   GV+  + K   I+  +C  I  +    
Sbjct: 651 ITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKGDDIA--VCMDIAVDEEEL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   + +        +  RGGVG +  K   ++GK + +
Sbjct: 709 LVISENGFGKRTPVNEYKVQHRGGVGLITYKISEKTGKLVGA 750


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/797 (32%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N E +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNSEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/726 (50%), Positives = 513/726 (70%), Gaps = 5/726 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + FKK 
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VA  +L+G+D+D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+RAR
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRIRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L  WL HR +VL RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVLQRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++ILN+R
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E   L AE+  + +LL+S   +W +I  E++ +++ F  +  LG R
Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLDSEPLRWKKITEEVKAIRKAFG-AGALGTR 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+                 +E+EP+T+++S +GW+++LK H +D +   FKEGD  ++A+
Sbjct: 487 RSELA-APPRAIELSAIEAVEREPLTLILSAKGWVKTLKGHGIDPTTQKFKEGDGFRLAV 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      + L
Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+F +
Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGKR  
Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPARI---RPFADFRDYLGKRAD 722

Query: 736 VGSLVP 741
           VG   P
Sbjct: 723 VGRPAP 728


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/784 (34%), Positives = 404/784 (51%), Gaps = 60/784 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKS
Sbjct: 7   NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    +A I+NP IS E+LL  I GPDFPTGG  +  RE I++ YR GRG  ++RAR
Sbjct: 187 LTEVINGIIATIENPNISFEELLALIPGPDFPTGG-FIYGREGILQGYRTGRGIVQMRAR 245

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     I+VTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++ 
Sbjct: 246 ASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  + M+T F +NM  +  G  P+V+ L   +  ++ HRRE++ R
Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAG-RPRVLTLRDAIGHFIDHRREIVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R+ F ++  + R  IL+G  IA   +D +I +IR    P        S            
Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKM 424

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LTE Q   ILNLRL  L  LE  +I  E D++L    ++  +L 
Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILA 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+RE+KE F        RRT   E+         +  I +E + V +S+
Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRT---EIVDRSAEISLEDTIVEEDVVVTVSH 536

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      + +  KE D ++    A + D +L  +  GK Y +   
Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596

Query: 579 NLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +  G     G+AI  L++L  N+ I        +D    +++ +  G        E   
Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLGVVKKSPLREYAN 656

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +   +K+  V    G   V +  +N K + F  D    M R  +GVR  S
Sbjct: 657 IRSGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPMGRVSRGVRGMS 716

Query: 692 YKDGGISDVICFKI----CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +D  +  VI  +I      G T        + +        +  RGG G +  K   R+
Sbjct: 717 LEDDDV--VIGMEIINPNATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN 774

Query: 748 GKFL 751
           G  +
Sbjct: 775 GCVV 778



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 80/223 (35%), Gaps = 20/223 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L     + +   ++ +  G ++              + A++  +GD L   
Sbjct: 617 QENEQITAILSVKGFDDDRNIIMATRLGVVKKSPLREYANIRSGGIIAVNLDDGDKLIAV 676

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                   +LL S +GK+      +    R  G   + +  + L  +  ++   + +   
Sbjct: 677 ALTDGRQDVLLASKNGKSIRFHEDD---ARPMGRVSRGVRGMSLEDDDVVIGMEIINPNA 733

Query: 613 K---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVG 665
               +  V+  G     E  E    +R GK  + + + E+   VV        + + ++ 
Sbjct: 734 TGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVVDIMQVTDENDLMLIT 793

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  K+L   + Q   + R  +GVRL +  +     V   K+ E
Sbjct: 794 DQGKILRIPVAQFSVIGRNTQGVRLMTA-EQNERIVAVAKLAE 835


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/767 (31%), Positives = 407/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGG-YIYGVSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRARAEIE-SGQAHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HRREV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALI-HGRPKTLNLRDLIKYFIEHRREV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F  +     RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDA-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGEDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGEDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 32  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 212 VVDACQHLLNNPDATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 510 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDA------RRSKIELNATE--LNT 561

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D +
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 621

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 622 LCFSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMAT 681

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 682 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEND 741

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     +G     +     E  + + +    + +           RG  
Sbjct: 742 VRPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTK 801

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 802 GMIAIQTSERNGKVVAA 818



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 674 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 733

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L+  Q ++   V       +L  +  G       +E
Sbjct: 734 AVRFDENDVRPMGREARGVRGM-QLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITE 792

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 793 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 852

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 853 GVTLISLDEG 862


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/767 (31%), Positives = 406/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGG-YIYGISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L  G  P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNG-RPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ  ++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNFLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  D G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 75/199 (37%), Gaps = 14/199 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           +L           +  +  G I+              ++A+  +E D +      +  + 
Sbjct: 602 SLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNE 661

Query: 563 ILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSS 619
           I++ + +G+A      A  ++     G     L D   ++ I    + D  T  ++VVS 
Sbjct: 662 IIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMVVSE 721

Query: 620 KGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
           +G     +  +     R GK    + ++ +  K+  +  VT +  + ++ ++   +   +
Sbjct: 722 QGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKV 781

Query: 676 DQIPEMSRGK-GVRLQSYK 693
             +  M R   GVRL + +
Sbjct: 782 ADVRIMGRATQGVRLINLE 800


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/799 (31%), Positives = 412/799 (51%), Gaps = 64/799 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++    +    +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+
Sbjct: 2   TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  LA++ + +I+I++L++ I  PDFPT GI +     + E YR GRG
Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGI-IYGTAGVKEGYRTGRG 240

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR   E++G+G    I+V E+PYQV K+RL+E+I EL+  K+I  + D+RDES +
Sbjct: 241 RVIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   P++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---- 420
           RREV+ RR+ F ++    R  IL+GL +A  N+DEIIA+I+  + P   K  ++ R    
Sbjct: 360 RREVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRS 419

Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + L+E Q  AIL LRL+ L  LE+ +I  E
Sbjct: 420 PLVEEMLARVDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              ++     +  +L   ++    I+ E+  +K  F  +     RR+   E+        
Sbjct: 480 YREIMEVILDLIDILARPERINQIISDELNAIKTQFGDA-----RRS---EIEPFGGDIN 531

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V +S+ G+I++         +       A   K+ D ++    A+T D 
Sbjct: 532 IEDLITPQDMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDY 591

Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  S+ G+ Y +   +L  G     G+ I  ++ L   + I        +     + + 
Sbjct: 592 VLCFSSFGRCYWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFRDDQFVFMC 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           ++ G        +       G   + +   + +  V    GD  V +  +  K + FS  
Sbjct: 652 TANGTVKKTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSET 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R   GVR     +G     +     E    + ++   Y +           RG 
Sbjct: 712 DVRAMGRNATGVRGMMLGEGQQVISLLVTCSEDQMVLTASDGGYGKRTRAGEFRHTSRGT 771

Query: 736 VGSLVPKGFPRSG-KFLSS 753
            G +      ++G K +++
Sbjct: 772 QGVIAMDLTDKTGLKLVAA 790



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 84/218 (38%), Gaps = 15/218 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
               A L       +    + +  G ++        +  +  + A++  EGD+L      
Sbjct: 631 EKINAMLPVKEFRDDQFVFMCTANGTVKKTPLVDFSRPRTAGIIAVNLDEGDNLIGVALT 690

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLV 616
           H  D+++L S  GKA      ++ +   +   ++ ++ L   Q +++  V       +L 
Sbjct: 691 HGDDQVMLFSDAGKAVRFSETDVRAMGRNATGVRGMM-LGEGQQVISLLVTCSEDQMVLT 749

Query: 617 VSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLL 671
            S  G        E    +R  +G   + ++ +  +KLV        D V ++     L+
Sbjct: 750 ASDGGYGKRTRAGEFRHTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDVMLITTGGVLI 809

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
              + ++ E  R  +GVRL +  D G   +   K+ EG
Sbjct: 810 RTKVSEVRETGRSAQGVRLINL-DEGEKLISLVKVAEG 846


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/808 (32%), Positives = 410/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  +SEP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L++ I  PDFPT GI +   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGI-IYGIQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLNHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS---- 422
           EV+ RR+ F ++    R  +L+GL +A  NID+ I IIR    P   K  +++R      
Sbjct: 360 EVVTRRTVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKL 419

Query: 423 --------------------------------------LTENQVDAILNLRLRSLRKLEE 444
                                                 L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++AE E +  +L    +    I  E+  VK+ F + T +G RR+   E S 
Sbjct: 480 DKIVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQ-TKIGARRS-LVEHSS 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            D +T  + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 538 FDLST--EDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFV 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF-------V 607
           A+T D IL  S  G+ Y L    +  G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR     +G     +     E  + + +    Y +  N 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMMLDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + ++ G ++              + A+   EGD L  A        ++L S
Sbjct: 655 TFPADQYVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFS 714

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIV 626
             GKA      ++     +   ++ ++ L+  Q ++   V +   + +L  +  G     
Sbjct: 715 DGGKAVRFDENDVRPMGRNARGVRGMM-LDEGQSVIAMLVAEDEQQSVLTATENGYGKRT 773

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
             +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I EM 
Sbjct: 774 NITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMG 833

Query: 683 RGK-GV 687
           R   GV
Sbjct: 834 RATQGV 839


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/797 (32%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLGNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFIFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + ++ EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 405/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGG-YIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 -----VRRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/726 (50%), Positives = 513/726 (70%), Gaps = 5/726 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I+AM ++ LD  + FKK 
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD+AAA RYTEAR
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VA  +L+G+D+D+VDFR TY+ E+ EPVV  + FPNLLANG +GIAVGMATSIP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AA+ LI +P+ ++  L+E + GPDFPTGG+IVE R +++++Y  GRG  R+RAR
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRIRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W +VVTEIPYQVQKSRLIE+IA+L+  K++PLL DIRDES  D+R+VL P
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P++LME++F  + +E+RF LNMNVL   RVP V  L  +L+ WL HR +VL RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVLQRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+QA+DRR+EIL G L  YLN+DE+I IIR ED  K  +++ FSLTE Q ++ILN+R
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E   L AE+  + +LL S   +W +I  E++ +++ F  +  LG R
Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLGSEPLRWKKITEEVKAIRKAFG-AGALGTR 486

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+                 +E+EP+T+++S +GW+++LK H +D +A  FKEGD  ++A+
Sbjct: 487 RSELA-APPRAIELSAIEAVEREPLTLILSAKGWVKTLKGHGIDPTAQKFKEGDGFRLAV 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +TDR+ + +TDG+A+TL A +L  GRG G+ I+LLI+L++++D+V  F      + L
Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   ++ + +++A  R GK  L +   E  ++ + V GDHV V+G+NR++L+F +
Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG GV LQ YK+GG+ D       +G  W D A     R   D   +LGKR  
Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPARI---RPFADFRDYLGKRAD 722

Query: 736 VGSLVP 741
           VG   P
Sbjct: 723 VGRPAP 728


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + +++ F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +  K     +  RF L+E 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVRNLESEDDYLVFATKRGIVKRSALSNFSRINKNGKIAISFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G   +V+   +    +
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREG--DEVVGLDVAHAES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ FKE D L     
Sbjct: 597 ETISTMIAVRNLESEDDYLVFATKRGIVKRSALSNFSRINKNGKIAISFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
               + IL+ ++       P   L         ++  I L    ++V   V   +S  ++
Sbjct: 657 TTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKG-ITLREGDEVVGLDVAHAESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   ++ I +  R   GVRL    +G     + 
Sbjct: 776 IRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVA 808


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/790 (32%), Positives = 406/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++ +ISIE L+E+I GPDFPT  I +  R  I+++YR GRG   +RAR 
Sbjct: 188 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAI-INGRRGIIDAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELLKQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E++  +L S ++    I  E+  +++ ++       RRT   E++        + +I +E
Sbjct: 486 EELLFILRSPERLMEVIREELEAIRDAYNDP-----RRT---EITENTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYYVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               +       G   + ++  +++  V    G + V +     K++ F+ D +  M R 
Sbjct: 658 TPLQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     D      +     EG   +      + +   +       R   G +  K 
Sbjct: 718 ATGVRGIKLMDNDKVVSLIIPRGEGH-ILTVTENGFGKRTEEAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 SERNGHVVGA 786



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EQDERITAILPVREYEEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              + ++ ++L S  GK        + +       ++  I L  N  +V+  +      +
Sbjct: 686 DLTNGSNEVMLFSAQGKVVRFAEDAVRAMGRTATGVRG-IKLMDNDKVVSLIIPRGEGHI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     EE+E    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 745 LTVTENGFGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDS 714
           +   + ++  + R  +GV L    +D  +  +      E     D 
Sbjct: 805 VRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETEDDENTDE 850


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 410/756 (54%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++G+     +KKS
Sbjct: 8   GVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADKGYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE++
Sbjct: 68  ARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTESK 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VD+RD Y+ ++ EP+V PS+FPNLL NGTSGIAVGMAT+IP H+
Sbjct: 128 MSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIPPHH 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A LAL DNP I+ E+L+E+I GPDFPTGGII+  R  I  +Y  G+G   +R+ 
Sbjct: 188 LGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIIL-GRSGIRRAYETGKGSVLIRSV 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+V EIP+QV K+RLIEKIAEL+  K+I  + D+RDES  +   ++  
Sbjct: 247 VDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +L+ +++  + M+T F LNM  L  G  P+V+ L  IL  +L H++ V+ RR
Sbjct: 307 VRRDASASVLLNNLYKQTAMQTSFGLNMLALVDG-RPKVLSLKEILFHYLEHQKVVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDAIL 432
           + F +   + R  IL+GL IA  +ID IIA+IR     +          +LTE Q  AIL
Sbjct: 366 TQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+   E++  +L +  +    I  E+ E+K+ FS     
Sbjct: 426 DMRLQRLTGLERDKIEEEYQALVKLIEELRYILANEYRILEIIKEEMLEIKDRFSDK--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     +   +    + +I  E   + +++ G+I+          K     +  + 
Sbjct: 483 --RRTEIT--TGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRGGRGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  L+  T D IL  +  GK Y      +        G  +  L++++  + +
Sbjct: 539 TNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPEYGRTAKGLPLVNLLEISKEEKV 598

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +         + +G +     +      + G   + +  E+++  V    G 
Sbjct: 599 TAVIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELISVKLTDGT 658

Query: 660 HVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
              V+  ++  L+ F    I  M R   GVR    ++G    V+  +I +     +    
Sbjct: 659 KEMVIGTKDGALIRFPETDIRSMGRTASGVRGIRLREG--DAVVGMEILDPNDNVLVITE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +   +    +  RGG+G    +   ++G  ++
Sbjct: 717 KGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVA 752



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
                    A ++    +++      +  G  +     +        L A+  +E D L 
Sbjct: 591 EISKEEKVTAVIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELI 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T  +++ + DG     P  ++ S       ++  I L     +V   + D   
Sbjct: 651 SVKLTDGTKEMVIGTKDGALIRFPETDIRSMGRTASGVRG-IRLREGDAVVGMEILDPND 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTG-DHVAVVGENR 668
            +LV++ KG     +ESE    +R G              +  V  V G + + ++  N 
Sbjct: 710 NVLVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGTEDIMLITVNG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            L+   ++ I    R  +GVRL    D  +   + 
Sbjct: 770 ILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVA 804



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 76/218 (34%), Gaps = 23/218 (10%)

Query: 465 LNSGKQQWNQIA-CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI--- 520
           ++  ++    I   E +E    F  + +   +RT     +   +  L    + +E     
Sbjct: 592 ISKEEKVTAVIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQNGLIAISLREEDELIS 651

Query: 521 ---------TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                     V+ +  G         IRS+   +  +  +  +EGD++         D +
Sbjct: 652 VKLTDGTKEMVIGTKDGALIRFPETDIRSMGRTASGVRGIRLREGDAVVGMEILDPNDNV 711

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+++  G                G  I+     + N  +V     + T  +++++  G  
Sbjct: 712 LVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGTEDIMLITVNGIL 771

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
             ++ ++I    R   G   +++  +E +  V KV  D
Sbjct: 772 IRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKKD 809


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/797 (32%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N E +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNSEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA ID+ +ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 KEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +   +       RG  G +  K
Sbjct: 718 ATGVRGIKL--AGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGEDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G      E E    +R  +G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 400/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NP+ SI++L+E +  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------------- 422
            R  +L+GL +A  NIDE IAII+    P   K  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASA 418

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/761 (35%), Positives = 422/761 (55%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +E +  V +   ++  +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DLNKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +++ +++D VDF   Y+ E++EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNPEIS+ +L++ YI GPDFPTGGII+  R  I +++  GRG 
Sbjct: 182 IPPHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR++  +E++G G   IVVTEIPYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 IMVRSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   PD+++  ++ ++ ++T F +NM  L   + P+ M +   L+ ++ H+ 
Sbjct: 301 IRIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALV-EKTPKQMGIREALQHYVNHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTEN 426
           +V  RR+ F ++  + R  IL+GL IA  +IDEII +I   +N+ + +  ++ +F LTE 
Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   L+     +  +L +  +    I  E+ EVK  F
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E+S AD     + +I  E + + ++  G+I+               
Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D + + +   T D ++L +  GK Y +    +        G  +  L++L
Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591

Query: 597 NHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  + +   V       +  LL V+  G       SE  +  + GK  + +   +++  V
Sbjct: 592 DKEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D I  M R   GV+  +    G   V      EG   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV--DGSIVVGAATSKEGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        L  RG  G        ++G+ +S
Sbjct: 710 LAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVS 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 15/194 (7%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           + ++  G ++       D        A+  +E D L         D I++  ++GKA   
Sbjct: 613 LFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRF 672

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
              ++   R  G     +   N +  IV  A        LL VS  G        E    
Sbjct: 673 HEDDI---RAMGRTASGVKGFNVDGSIVVGAATSKEGTHLLAVSENGYGKRTAIEEYRLT 729

Query: 635 TR--KGKTFLKVSSE-EKMKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           TR  KG   + V+++  ++  V  V GD    +V  +  ++  S+D I   SR  +GV+L
Sbjct: 730 TRGAKGVKTINVTNKTGELVSVRAVNGDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKL 789

Query: 690 QSYKDGGISDVICF 703
            +  D      +  
Sbjct: 790 INVADEESVAKVAI 803



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 19/189 (10%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q  +IA  +RE  E+       G         +       +  +       +  +  G 
Sbjct: 633 RQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRA-----MGRTASGV 687

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                  S+ + A   KEG      L              GK   +    L +    G  
Sbjct: 688 KGFNVDGSIVVGAATSKEG---THLLAVSENGY-------GKRTAIEEYRLTTRGAKGVK 737

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSE 647
              + +     ++V+    +     ++V++ G    +   +I   +   +G   + V+ E
Sbjct: 738 TINVTN--KTGELVSVRAVNGDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADE 795

Query: 648 EKMKLVVKV 656
           E +  V  V
Sbjct: 796 ESVAKVAIV 804


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/788 (31%), Positives = 398/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  AL+ +PE+ IE+L+E +  PDFPT GI +     + E YR GRG   +R R  V
Sbjct: 190 VLDACFALLKDPEMGIEELIELVPAPDFPTAGI-IYGTVGVKEGYRTGRGRVVMRGRTHV 248

Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ R G   ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---------------- 421
           F ++    R  IL+GL +A  N+DE+IAII+    P    V+                  
Sbjct: 368 FELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRA 427

Query: 422 ---------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ ++ SE   ++     
Sbjct: 428 AMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  +    I  E+ E+++ F        RR+   E+    +    +  I  + +
Sbjct: 488 LLDILATPARVTAIINDELTEIRKQFGDK-----RRS---EIVANAQDLSLEDFITPQDV 539

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+++S         +       A   KE D +     A+T D IL  S+ G+ 
Sbjct: 540 VVTLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQV 599

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    +   S  G G+ I  L  L   + I        +D    + + +S G      
Sbjct: 600 YWLKVYEVPQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKKTP 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-K 685
            S+     + G   + +   + +       G + V +V    K + F+ D +  M R  +
Sbjct: 660 LSDFANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGRATR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     D      +     +  + + +    Y +           RG  G        
Sbjct: 720 GVRGMKLADNQQVLSLLIADNDQQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISE 779

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 780 RNGLVVAA 787



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 82/207 (39%), Gaps = 13/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L     ++     + ++ G ++              + A++  EGD L  A
Sbjct: 626 EEGEKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPRKSGIIAINLDEGDFLIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
              +  + ++L+S  GKA      ++ S       ++ +  L  NQ +++  + D+  + 
Sbjct: 686 EITNGANDVILVSNGGKAVWFTEDDVRSMGRATRGVRGM-KLADNQQVLSLLIADNDQQS 744

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           +LV +  G       ++   + R  +G   + +S    + +  K+    D + ++     
Sbjct: 745 VLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGV 804

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           L+   + +I E+ R   GV L +  +G
Sbjct: 805 LIRTRVKEIRELGRATQGVTLINLGEG 831


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/797 (31%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++N + +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNADATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           + ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRA 427

Query: 416 ------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTSVKAEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  T + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|220903292|ref|YP_002478604.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/755 (33%), Positives = 413/755 (54%), Gaps = 29/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+  ++    KKSARI
Sbjct: 8   QISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 67

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+ AA RYTE RM++
Sbjct: 68  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSR 127

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+  L  +D++ VDFR  Y+    EP V PSK PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 128 LAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A   L+D+P+ SI+ L+E++ GPDFPT G +   +  + ++Y  GRG  +VR R  +
Sbjct: 188 LCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGK-GLYDAYHTGRGTVKVRGRMEI 246

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+  + +  IV+ EIPY + KS L+EKIA L+  ++I  + D+RDES      V+    R
Sbjct: 247 EDRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKR 306

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++ +++  + +E+ F +NM  +     PQ++ L   L  ++ HRREV+ RR+ +
Sbjct: 307 GTIPEIVINALYKFTPLESSFGINMLAVVDN-RPQLLNLKSALTCFVDHRREVVIRRTRY 365

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL +A  NIDE++A+IR     D+ +  ++ RF L+E Q  AIL +R
Sbjct: 366 DLEKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKRFELSELQAKAILEMR 425

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+  ++ +E  +LL + E   S+L + +    ++  EIRE++E F+       R
Sbjct: 426 LQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLRGELKREIREIRETFATP-----R 480

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
           RT     +  D     + +I  E + + +S RG+++          K     ++AL+  +
Sbjct: 481 RTEVLREALTDIDI--EDLIPDEDVVITLSRRGYMKRTGLENYQQQKRGGKGIAALYTSD 538

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++  L       + L +  G+ + L    +   S    G  I  L+ L   + + T 
Sbjct: 539 DDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLEDGEWVTTV 598

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ +G       S      + G   + +  ++++ +V  +  D H+
Sbjct: 599 LALREFAEDKYFLFVTKRGMVKRSSASLYARCRKTGLMAVGLREDDELVVVRPIRNDSHI 658

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRS 718
            +   +   + FS   +  M R   GV+  + +  D  ++ VI  +  +    +  +   
Sbjct: 659 VLATADGIAIRFSCKDVRPMGRVATGVKGIALRRQDFVVAGVIVKETDQTTEIMSISANG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +  L  L  RGG G +  K   ++G  + +
Sbjct: 719 FGKRTSIELYRLQSRGGKGIINFKVTGKTGPVVGA 753



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 21/241 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   + ++ RG ++        +     L A+  +E D L + 
Sbjct: 590 EDGEWVTTVLALREFAEDKYFLFVTKRGMVKRSSASLYARCRKTGLMAVGLREDDELVVV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTC 612
                   I+L + DG A      ++         ++ +     +  +    V   D T 
Sbjct: 650 RPIRNDSHIVLATADGIAIRFSCKDVRPMGRVATGVKGIALRRQDFVVAGVIVKETDQTT 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
           +++ +S+ G             +R GK  +       +   +  +     D + ++    
Sbjct: 710 EIMSISANGFGKRTSIELYRLQSRGGKGIINFKVTGKTGPVVGAMPVRDDDSLILLTSAN 769

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           K++   +D++    R   GV L    +G  + V+ F        +D  G++      D+ 
Sbjct: 770 KIVRIGLDEVRSKGRATMGVMLVRLDEG--AHVVGFD------RVDEGGQTGRDLSEDMD 821

Query: 728 G 728
            
Sbjct: 822 E 822


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 11/193 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR 683
           +   + +I  + R
Sbjct: 805 VRTRVSEISVVGR 817


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 411/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ESAGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IKELMHILASTERLMEVIREELETVRDAFGD-----VRRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I      D       + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               ++       G   + +  ++ +  V    GD  + +  +  K++ F+ D++  M R
Sbjct: 656 KTPLTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR     +      +     EG   +      Y +           R   G +  K
Sbjct: 716 TAAGVRGMKLAEDDQVVSLIVPANEGD-ILTVTQNGYGKRTELAEYPTKGRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSDRNGPVVGA 785



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L      ++    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EEGERITAILPVDEFSEDKFIFMATGDGTVKKTPLTQFANVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    I+L S  GK        + +       ++ +  L  +  +V+  V  +   +
Sbjct: 685 DITNGDSDIMLFSKAGKVVRFAEDKVRAMGRTAAGVRGM-KLAEDDQVVSLIVPANEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     E +E     R   G   +KVS      +  V    GD + ++ +   L
Sbjct: 744 LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++ ++ R  +GV L    + 
Sbjct: 804 VRTRVSEVSQVGRNTQGVTLIRTAED 829


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 405/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGG-YIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 -----VRRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 405/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGG-YIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 -----VRRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/758 (34%), Positives = 406/758 (53%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  G  +K
Sbjct: 5   EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++VAEL+LQ +D++ VDF   Y+E   EP V P+KFP LLANGT+GIAVGMAT+IP 
Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  L LID P+ ++E+L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLIL-GTEGIRQAYTTGRGVIKLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E    G   I+VTE+PYQV K+RL+EKIAEL+  K I  +  + DES      ++
Sbjct: 244 ARVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + ++  F + M  L  G  P+V+ L  +L  ++ H+++V+ 
Sbjct: 304 IDVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGS-PRVLTLKEVLHYYIKHQQDVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F L+E Q  A
Sbjct: 363 RRTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   + + S+L    +    I  E+  V+E +    
Sbjct: 423 ILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------- 542
               RRT   E++        + +I +E + + +++  +I+ +   +             
Sbjct: 482 ----RRT---EITIDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +  KE D ++  L   T   IL  +  G+ Y L A  +   S +  G AI  L+ L   +
Sbjct: 535 MGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEE 594

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L + + KG       SE  +  R G   + +  ++ +  V    
Sbjct: 595 KITAVIQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTD 654

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWIDS 714
           G+ HV +       + F+ D +  M R  +GV+  + K G +  V+    +      +  
Sbjct: 655 GEKHVILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDV--VVGMDNLARNAEVLTI 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        L  RGG G +  K   ++G  + 
Sbjct: 713 TAEGYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIG 750



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A +Q      E    + + +G ++              L+A++  E D L   
Sbjct: 591 ESEEKITAVIQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGV 650

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L +  G A      ++ S       ++  I+L     +V         ++
Sbjct: 651 KFTDGEKHVILGTAGGMAVAFAEDDVRSMGRTARGVKG-INLKAGDVVVGMDNLARNAEV 709

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           L ++++G       SE    TR GK  + +   EK   V+ +     G  + ++  +  +
Sbjct: 710 LTITAEGYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQELILITTDGIV 769

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +D+I  +SR  +GV++    +G 
Sbjct: 770 IRTKVDEISVISRNTQGVKVVRLGEGD 796



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 26/238 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  L+  E  +   +     A    +   L S ++    I   E    + +F  +    
Sbjct: 563 RVYCLKAYEINEASRQAKG-TAIINLLQ--LESEEKITAVIQVKEFLPERYLFMATKKGI 619

Query: 494 RRRTTFCEVS------------RADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            ++T+  E                D   +     + E   ++ +  G         +RS+
Sbjct: 620 VKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSM 679

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ K GD +    +      +L ++ +G                G+ +  +
Sbjct: 680 GRTARGVKGINLKAGDVVVGMDNLARNAEVLTITAEGYGKRTATSEYRLQTRGGKGLINM 739

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                   ++   V     +L+++++ G     +  EI   +R   G   +++   +K
Sbjct: 740 KVTEKTGAVIGLKVVRPGQELILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDK 797


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 32  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 212 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 561

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 622 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTT 681

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 682 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 741

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 742 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 801

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 802 GMIAIQTSERNGRVVAA 818



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 677 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 736

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 737 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 796

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 797 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 856

Query: 690 QSYKDG 695
            S  +G
Sbjct: 857 ISLDEG 862


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/790 (31%), Positives = 401/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IA+I+    P   K  ++SR                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERISAIIVDELTSIKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 14/212 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG-GISDVICFKICEGLTWIDSAG 716
           GV L S  +G  +S +      EG +  DS G
Sbjct: 815 GVTLISLDEGTKLSGLQQVAEAEGESENDSDG 846


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 32  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 91

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 92  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 151

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 152 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 211

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 212 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 270

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 271 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 330

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 331 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 389

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 390 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 449

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 561

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 622 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTT 681

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 682 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 741

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 742 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 801

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 802 GMIAIQTSERNGRVVAA 818



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 677 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 736

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 737 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 796

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 797 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 856

Query: 690 QSYKDG 695
            S  +G
Sbjct: 857 ISLDEG 862


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/767 (31%), Positives = 406/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN ++++E+L+EY+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGG-YIYGISGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L  G  P+++ L  ++  ++ HR +V
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNG-RPKMLNLRDLIVYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFKLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E D ++ +   ++S+L   +     I  E+ EV+  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  D G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 19/228 (8%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           +L           +  +  G I+              ++A+  +E D +      +  + 
Sbjct: 602 SLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNE 661

Query: 563 ILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSS 619
           I++ + +G+A      A  ++     G     L D   ++ I    + D  T  ++VVS 
Sbjct: 662 IIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGMICIKDLETESVMVVSE 721

Query: 620 KGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
           +G     +  +     R GK    + ++ +  K+  +  VT D  + ++ ++   +   +
Sbjct: 722 QGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDDNDLMIINKSGITIRLKV 781

Query: 676 DQIPEMSRGK-GVRLQSYKD-----GGISDVICFKICEGLTWIDSAGR 717
             +  M R   GVRL + +      G +  V    + + +   +  G 
Sbjct: 782 ADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEIPAEEGEGN 829


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/816 (31%), Positives = 408/816 (50%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +      R T    +  D +   + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILTEYGDA------RRTVINANEIDMSL--ED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y +   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSN 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR    ++G    V+   + +G    +     
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+G  + +
Sbjct: 770 GYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 30/218 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAADKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
           +  D I+L S +GK          S  G        GE +  L            I L  
Sbjct: 688 NGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEE 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G     + SE  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             + D + ++ +   L+      +  + R  +GV +  
Sbjct: 808 VGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIR 845


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/746 (50%), Positives = 519/746 (69%), Gaps = 12/746 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D I +        + +  +  AL  RYLAYALSTI  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MSKDVIPDEGG----RILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  M L+  AA +KSA++VGEV+G  HPHGDQS+YD+LVR+AQ F QRYP++ GQGNFGN
Sbjct: 57  MHNMRLNPQAAARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTE +MT  A L+L G+DE+AVDFR TY+ +D EPVV P+ FPNLLANG 
Sbjct: 117 IDGDSAAAMRYTECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP HNV E+ +A   LI  P      L+  I GPDFPTGGI VE RE+I 
Sbjct: 177 TGIAVGMATSIPPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIY 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG  RVRAR+ VE++GRG+W I+V+EIPYQVQKSRLIE++A+LI AK+ PLL D
Sbjct: 237 EAYETGRGSVRVRARYEVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES E+VR++L PK R++DP++LMES+F +SD+ETRF  NMNVL     P+VM L  I
Sbjct: 297 VRDESDEEVRLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTI 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  +L HRREVL R+S +R+  I++R+ +L GL+IA+LN+DE+I IIR ++ PK  +++R
Sbjct: 357 LTSFLDHRREVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMAR 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LTE QVD IL+ RLR L +LEE  IK E D L  E++ + SLL S K+QW +I  ++ 
Sbjct: 417 FELTEVQVDYILDTRLRQLARLEEMAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLT 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EV++       L  RRTTF E  +  +    ++ + KE +TV++S RGWIR+ K    D 
Sbjct: 477 EVRKQL-----LSARRTTFAEAPQGVEVAAIESYLPKEALTVILSERGWIRATKGRVDDP 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S L FKEGD+L   +  + TD++L++++DG+ +TL    L SGRGHGE +QL++++  N 
Sbjct: 532 SELKFKEGDNLGFLVPGYNTDKLLIMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENT 591

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            IV  F++    K L+VS  G  F++ E + + N + GK+ L  +   +  + + VTGDH
Sbjct: 592 RIVNVFMFTPGAKRLMVSKNGYGFVMNEEDAVGNKKAGKSVLN-ADGTEAFVALPVTGDH 650

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           V ++GEN K+L++ + ++PEM+RGKGV+LQ YKDGG+ D+  F     + W D +G++  
Sbjct: 651 VVILGENNKVLVYPVSELPEMARGKGVKLQGYKDGGVKDIAIFDQAGPVQWFDGSGKA-- 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
           R   D   ++GKR  VG + P+G  +
Sbjct: 709 RDFKDWKDFVGKRASVGKMAPRGLRK 734


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 397/797 (49%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L+ NP+ ++++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLSNPDATVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---------------- 421
           + ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVREMLTRA 427

Query: 422 ------------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             ++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTTVKAEFGDA------RRSRIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  ++ K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR    +DG     +     E  + + +    + +           RG  
Sbjct: 720 VRPMGREARGVRGMQLEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/753 (33%), Positives = 418/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++E++ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEIIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++ RF  T+ Q  AIL
Sbjct: 365 TRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQE--QETVITLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    TR GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EVVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  +   ++GK +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYRVTDKTGKIV 749



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 13/232 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHS 537
           +R  +         G       ++ + +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                     A+   + DSL        +D ++L+S++G        ++       + ++
Sbjct: 628 FENTTRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVMGRSAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     +K  
Sbjct: 688 GM-TLEDGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVTDKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +V +      D + +       +   + Q+P   R  +GV+L       I 
Sbjct: 747 KIVDIKMVNDEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIK 798


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/802 (33%), Positives = 413/802 (51%), Gaps = 74/802 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I++ +I+I++L+EYI GPDFPT  + +  R+ IV++Y+ GRG   +RA
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVV EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                +++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+  VKE F+       RRT   E++ A      + +I +
Sbjct: 484 IAELMYILSSSERLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDMEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      +A   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L  N+ I        Y     + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID------- 676
               ++       G   + +   + +  V    GD  + +     K++ F          
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEG 715

Query: 677 ----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                +  M R   GVR     +G     +     +G   +      Y +          
Sbjct: 716 NAKGGVRGMGRTAAGVRGIKLAEGDKVISLIVPHNDGD-VLTVTENGYGKRTELAEYPAK 774

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G+ + +
Sbjct: 775 SRATQGVVSIKVSERNGRVVGA 796



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 22/236 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++        +  S  + A++ +EGDSL   
Sbjct: 625 EENERITAILPVREYTEDKFVFMATADGTVKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKA---YTLPAGNLLSG-----RGHGEAIQLL--IDLNHNQDIVT 604
                   I+L S  GK    Y  P  +         RG G     +  I L     +++
Sbjct: 685 DVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVRGMGRTAAGVRGIKLAEGDKVIS 744

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDH 660
             V  +   +L V+  G     E +E  A +R   G   +KVS      +  V    GD 
Sbjct: 745 LIVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGRVVGAVQAEDGDE 804

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGLTWIDS 714
             ++     L+   + ++  + R  +GV L    +G  +  +      E     D+
Sbjct: 805 FMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTTEGEKVVGLQRIDEPEEELIEDA 860


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/755 (50%), Positives = 517/755 (68%), Gaps = 20/755 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA--- 71
           + +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + ++ G A   
Sbjct: 9   DAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASPD 68

Query: 72  ------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                       +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R PL+ GQGNFG
Sbjct: 69  VLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFG 128

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           NIDGD+AAA RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP  FPNLLANG
Sbjct: 129 NIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMATSIP HNV E+ +AA  LIDNP+     L++ + GPDFPTGG++V+S   I
Sbjct: 189 ATGIAVGMATSIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGGVLVDSASII 248

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI  +++P+L 
Sbjct: 249 SEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILA 308

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES E +RIV+ P+ R++DPDLLM+S+F L+D+E RFPLN+NVL   R P+V+ L  
Sbjct: 309 DVRDESDEQIRIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKP 368

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L EWL H+ +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR ED+PK VM++
Sbjct: 369 VLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMA 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L + Q +AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +Q  ++  ++
Sbjct: 429 EFGLNDRQAEAILNMRLRSLRKLEEMELRREHSELLKERDDLLKLVESPARQRTRLKKDL 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++++ +S  +D GRRRT   E +   +    +AMIEKEPITV++S RGWIR++  H   
Sbjct: 489 ADLRKRYSPDSDFGRRRT-LVEEAAPAREIPLEAMIEKEPITVILSERGWIRAMSGHRDL 547

Query: 540 LSA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            SA  L FKEGD   IA HA TTD++LL +  G+ +TL A  L  GRG G+ ++ L+D++
Sbjct: 548 ASADTLKFKEGDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMD 607

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               IV      +  +LL+ SS G  F+   +++IA TRKGK  + V +  K+ +V  + 
Sbjct: 608 GTGQIVALMPARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIA 667

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              D VAVVGENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W    
Sbjct: 668 ADADSVAVVGENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGG 727

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G    R+E D+  W   RG  G + P GFPR  +F
Sbjct: 728 GSGRVRTEADMTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/816 (32%), Positives = 408/816 (50%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID P +SIE+L+EYI GPDFPT    +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAA-SINGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRSKAEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I SE + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV E +        RRT   E    +     + 
Sbjct: 480 LLIVIAGLLLILRSPERLMEVIKEELEEVLEQYGD-----VRRTIINE---NEIDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ ++ 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYADDKFIIMATAH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR    +DG    V+   + +G    +     
Sbjct: 712 SETGEVKIDAETGEEIIALRPMGRTATGVRGIKLEDG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 770 GYGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGA 805



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 31/245 (12%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ +  G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYADDKFIIMATAHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
             +D I+L S +GK          S  G        GE I  L            I L  
Sbjct: 688 DGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLED 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G     E +E  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWI 712
               D + ++ +   L+    + +  + R  +GV +    +D  +  +   +  +    +
Sbjct: 808 VGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTDEIL 867

Query: 713 DSAGR 717
           D+ G 
Sbjct: 868 DADGN 872


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 405/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N EI+I++L+ YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +I+N   P                     
Sbjct: 364 RTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++++        RRT   E+  A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S  G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GKAY+L    L   S    G+ I  ++ L   + I        Y     + + +  G   
Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G   + +  +  K++ F+ +Q+  M R
Sbjct: 656 KTSLDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR      G    V           +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKL-SGEDQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGSVVGA 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L  +   ++    + +  G ++        K  +  L A++ +E DSL   
Sbjct: 625 EEGERITAILPVSEYSEDKFIFMATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GK        +         ++ +  L+    +V+  V  +   +
Sbjct: 685 DITDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGM-KLSGEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE  A +R   G   +KVS      +  V    GD   ++ +   L
Sbjct: 744 LTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++ ++ R  +GV L  
Sbjct: 804 VRTRVSEVSQVGRNTQGVTLIR 825


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 405/791 (51%), Gaps = 63/791 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N EI+I++L+ YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++++        RRT   E+  A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S  G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GKAY+L    L   S    G+ I  ++ L   + I        Y     + + +  G   
Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                +       G   + +  ++ +  V    G   + +  +  K++ F+ +Q+  M R
Sbjct: 656 KTSLDQFAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              GVR      G    V           +      Y +           R   G +  K
Sbjct: 716 TASGVRGMKL-SGEDQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIK 774

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 775 VSERNGSVVGA 785



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L  +   ++    + +  G ++        K  +  L A++ +E DSL   
Sbjct: 625 EEGERITAILPVSEYSEDKFIFMATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GK        +         ++ +  L+    +V+  V  +   +
Sbjct: 685 DITDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGM-KLSGEDQVVSLIVPSNEGDI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       SE  A +R   G   +KVS      +  V    GD   ++ +   L
Sbjct: 744 LTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++ ++ R  +GV L  
Sbjct: 804 VRTRVSEVSQVGRNTQGVTLIR 825


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/773 (29%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI+ + L+E+I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-GGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKRFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E D L+   + +  +L++ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPERCREVMKAELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G  +V+ 
Sbjct: 650 NEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 703 FKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +       T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITEKTGKLVA 762



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 87/224 (38%), Gaps = 16/224 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  + +G ++     +        + A++  EGD +      +  + +
Sbjct: 608 LDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGKNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           ++   +G+A      N+ +       ++ + +D +   ++V   V +      ++VVS +
Sbjct: 668 IMADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMVVSEE 727

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  EK   +  +  VT  + + ++ ++  ++  S+ 
Sbjct: 728 GYGKRSQVEDYRLTNRGGKGVKTLNITEKTGKLVAIKNVTDANDLMIINKSGIVIRMSVA 787

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           +   M R   GVRL +   K+  I+ V      E  T ++   R
Sbjct: 788 ECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMETQVEEESR 831


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/755 (50%), Positives = 517/755 (68%), Gaps = 20/755 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA--- 71
           + +K      AL +RYL YALSTI  R++PDLRDG KPVHRR++ AM  + ++ G A   
Sbjct: 9   DAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLKMEPGGASPD 68

Query: 72  ------------FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                       +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F  R PL+ GQGNFG
Sbjct: 69  VLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFG 128

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           NIDGD+AAA RYTEAR+TQ A  ++ G+DE  V+FR TYN ED EP VFP  FPNLLANG
Sbjct: 129 NIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANG 188

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMATSIP HNV E+ +AA  LIDNP+    +L+  + GPDFPTGG++V+S   I
Sbjct: 189 ASGIAVGMATSIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGGVLVDSPSII 248

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG FR RARW  E+ GRG+W  VVT+IP+QVQKS+LIE+IA LI  +++P+L 
Sbjct: 249 SEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILA 308

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES E +RIV+ P+ R++DPD+LM+S+F L+D+E RFPLN+NVL   R P+V+ L  
Sbjct: 309 DVRDESDELIRIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKP 368

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L EWL H+ +VL +R+  R+  I  R+E+L G +IAYLN+D +I IIR ED+PK VM++
Sbjct: 369 VLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMA 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L + Q +AILN+RLRSLRKLEE +++ E   LL E++ +  L+ S  +Q  ++  ++
Sbjct: 429 EFGLNDRQAEAILNMRLRSLRKLEEMELRREHSELLKERDDLIKLVESPARQRTRLKKDL 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            ++++ +S  +D GRRRT   E +   +    +AMIEKEPITV++S RGWIR++  H   
Sbjct: 489 ADLRKRYSPDSDFGRRRT-LVEEAAPAREIPLEAMIEKEPITVILSERGWIRAMSGHRDL 547

Query: 540 LSA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            SA  L FKEGD   IA HA TTD++LL +  G+ +TL A  L  GRG G+ ++ L+D++
Sbjct: 548 ASADTLKFKEGDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMD 607

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               IV      +  +LL+ SS G  F+   +++IA TRKGK  + V +  K+ +V  + 
Sbjct: 608 GTGQIVALMPARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIA 667

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              D VAVVGENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W    
Sbjct: 668 PDADSVAVVGENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGG 727

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G    R+E D+  W   RG  G + P GFPR  +F
Sbjct: 728 GTGRVRTEADMTPWRVARGAAGRMPPTGFPRDNRF 762


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/772 (30%), Positives = 388/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTNDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP I  + L+EYI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGA-YIYGLQGVRDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E VG     IV+TEIPY V K +LIE IA+L+   ++  + +  DES
Sbjct: 240 GRGRIVIRAKAEIE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKREANANVILNKLFKMTALQSSFSVNCIALVKG-RPRLLALKDCVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P   +  + +RF 
Sbjct: 358 EHRHEVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L      +  +L   +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT       A+     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGD-----DRRTKII---PAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y L   N+  G     G AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           ++ +++  V    G + + +   N + + F    I  M R   GVR       D  +  +
Sbjct: 650 ANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTMGRTATGVRGIRLDKGDDQVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I        T +  +   Y +           RGG G        ++G+ ++
Sbjct: 710 IVVNDSVQETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNITDKTGRLVA 761



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++   GD +      +  + +
Sbjct: 608 LDDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIANGDEVVDVRLTNGHNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKG 621
           ++ + +G+A       + +       ++ +     +  +V   V + + +  ++VVS  G
Sbjct: 668 IMANRNGRAVRFDEKTIRTMGRTATGVRGIRLDKGDDQVVGMIVVNDSVQETVMVVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                   +     R GK    ++  +   ++  +  VT D  + ++ ++   +  ++  
Sbjct: 728 YGKRSGVEDYRKTNRGGKGVKTMNITDKTGRLVAIKNVTDDNDLMIINKSGITIRLAVAD 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
              M R   GVRL +   K+  I+ V      E    ++   R
Sbjct: 788 CRVMGRATQGVRLINLSKKNDVIASVCKTMSSELEATVEEESR 830


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/772 (29%), Positives = 391/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG+IDGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ E   A IDNP+I ++ L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLSEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGA-YIYGIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E  G     IVVTEIPY V K  LIE IA+L+   RI  + +  DES
Sbjct: 240 GRGRIVMRAKAEIE-SGESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVKG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L  +   +  +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V   A   +E D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  I             ++++  ++  +  G                G   + +
Sbjct: 590 MLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
              +++  V    G + + +   N + + F+ + I  M R   GVR       D  +  +
Sbjct: 650 VDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     E  + +  + + Y +        +  RGG G        ++G+ +S
Sbjct: 710 VTVNEAESESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVS 761



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 86/225 (38%), Gaps = 15/225 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           TL           +  +  G ++     +        + A++  +GD +      + ++ 
Sbjct: 607 TLTDESFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIVDGDEVVDVRLTNGSNE 666

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           +++ + +G+A       + +       ++ +     + ++V     +   +  ++VVS +
Sbjct: 667 LIMANRNGRAVRFNENTIRTMGRTATGVRGMRLDGGDDEVVGMVTVNEAESESVMVVSEQ 726

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  E   ++  +  VT +  + ++ ++  ++  ++ 
Sbjct: 727 GYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTDENDLMIINKSGVVIRLAVA 786

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRS 718
            +  M R   GVRL +   K+  I+ V      E    ++   R+
Sbjct: 787 DVRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRA 831


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/795 (33%), Positives = 417/795 (52%), Gaps = 66/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + +  V+L   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +
Sbjct: 4   VAKEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +D++ VDF D Y+  + EP V P++ PN L NG SGIAVGMAT++P
Sbjct: 124 EIRMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALID+  +++++L+ Y+ GPD PT  I +     I E+YR GRG   +
Sbjct: 184 PHNLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAI-INGVAGIREAYRTGRGRMVI 242

Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR   EE  R G   ++VTE+PYQV K+RL+EKIA L+  KRI  + ++RDES +D   
Sbjct: 243 RARCEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R   P++++ +++  + +E+   +NM  L+ G+ P++  L  +L  +L HRREV
Sbjct: 303 VVIELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQ-PKLHSLRDVLDAFLRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420
           + RR+ + ++    R  +L+GL +A  NIDE+IA+I+      + K  +++R        
Sbjct: 362 VTRRTVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGI 421

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+E Q  AIL+LRL+ L  LE+ +I  E  +
Sbjct: 422 TEMLQRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRD 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++ ++L SG +    I  E+  +KE ++       RRT   E++        + 
Sbjct: 482 LLGSINELLAILGSGDRLMAVIREELLAIKEHYADP-----RRT---EITANRVDLTLED 533

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILL 565
           +I+ E + V +S+ G+ +S    S            A   K+ D +     A+T D +L 
Sbjct: 534 LIQPEDVVVTLSHGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLC 593

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S+ GK Y L    L   S    G+ I  L+ L+  + I        +D    + + + K
Sbjct: 594 FSSHGKCYWLKVYELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFDDQHFVFMATRK 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G       S+       G   + +  ++ +  V    G+  + ++ +  K + F  D + 
Sbjct: 654 GTVKKTPLSDFSRPRSSGIIAVNLQEDDWLVNVGITDGEREIMLLTDAGKAIRFPEDAVR 713

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR      G    VI   I      + +    Y +           RGG G 
Sbjct: 714 PMGRTAGGVRGIQL--GTGQSVIQLLILGEGDILTATENGYGKRTPVAEYPRRSRGGRGV 771

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G  + +
Sbjct: 772 ISIQTSERNGNVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 15/204 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A +     + +    + + +G ++        +  S  + A++ +E D L   
Sbjct: 627 DPAERISAVVSIKEFDDQHFVFMATRKGTVKKTPLSDFSRPRSSGIIAVNLQEDDWLVNV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   I+LL+  GKA   P   +   GR  G      I L   Q ++   +      
Sbjct: 687 GITDGEREIMLLTDAGKAIRFPEDAVRPMGRTAGGVRG--IQLGTGQSVIQLLIL-GEGD 743

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRK 669
           +L  +  G       +E    +R G+  + + + E+   VV        D + ++     
Sbjct: 744 ILTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERNGNVVGAAQVTEEDEIMLITNAGT 803

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY 692
           L+   + +I  +SR  +GV+L + 
Sbjct: 804 LVRIPVAEISIVSRNTQGVKLIAL 827


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/794 (33%), Positives = 410/794 (51%), Gaps = 65/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P +SI  L+ +I GPDFPT GI+   R  I E+Y  GRG   +
Sbjct: 184 PHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIR-GIQEAYLTGRGRIVM 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D   
Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    RS  P++++  +++ + +++ F +NM  L  G+ PQ++ L   L+ +L HR+EV
Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEVFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ F ++    R  +L+GL IA  NID +IA+I+    P                  
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL +RL  L  LE+ +I  E + +
Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++  +L + ++    I  E+ E+ E +S       RRT   E+         + +
Sbjct: 482 IIFISELLEILANPERLMAVIREELMEMLEQYSAP-----RRT---EIQDNYVDLRLEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ GK Y      L  G     G+    L+ L   + I T      ++    + +V++ G
Sbjct: 594 SSRGKVYWKKVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVTALG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  ++       G   L +   +++       G+  + +     K++ FS   +  
Sbjct: 654 VVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKVIRFSERDVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           + R  +GV+           VI   I    T + +    Y +        L  RGG G +
Sbjct: 714 LGRTARGVKGMELPSKHR--VIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGKGII 771

Query: 740 VPKGFPRSGKFLSS 753
             +  PR+G  + +
Sbjct: 772 SIRTTPRNGAVVGA 785



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E        L     EK+    +++  G ++        +  S  + AL  +EGD L  A
Sbjct: 626 EEGERINTVLSIREFEKDKYIFMVTALGVVKKTSLADFSRPRSSGIIALDLREGDQLVGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S+ GK       ++         ++ + +L     ++   +  ++  +
Sbjct: 686 DLTDGEQEIMLFSSGGKVIRFSERDVRPLGRTARGVKGM-ELPSKHRVIALIIA-ASGTI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G       +E     R GK  + +     +   +  V     D V ++     L
Sbjct: 744 LTATELGYGKRTAIAEYRLQGRGGKGIISIRTTPRNGAVVGAVQVEKEDEVVLISNGGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   +D I  M R  +GV+L + ++G
Sbjct: 804 IRTPVDNISLMGRNTQGVKLINLQEG 829


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L  G  P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +  V+   +    +
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDV--VVGLDVAHADS 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G    K   R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 77/233 (33%), Gaps = 18/233 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + + +++   V  +  G ++     +          A+ FKE D L     
Sbjct: 597 ETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
                 IL+ ++          +L         ++  I L  +  +V   V   DS  ++
Sbjct: 657 TDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRG-ISLREDDVVVGLDVAHADSEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK        E+   +V +T     + + +V  +  +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIVTNSGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
           +   ++ I +  R   GVRL    D      ++ VI     E  T        
Sbjct: 776 IRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/737 (34%), Positives = 411/737 (55%), Gaps = 30/737 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 300 LQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 358

Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 359 IALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEY 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +L+A   ++  +L +  +    I  E+ E+KE F+        R T    S  +     
Sbjct: 419 QSLVALIAELKDILANEARVLEIIREELNEIKERFNDE------RRTEIVTSGLET-IED 471

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +IE+E I + +++ G+++          K     +  +   E D ++  +   T D I
Sbjct: 472 EDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTI 531

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  GK Y      +        G  I  L+++   + I        +D    L   +
Sbjct: 532 LFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVSTFDEEQYLFFTT 591

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            +G +     S+       G   L +  ++++  V    G   + +  +N  L+ F  + 
Sbjct: 592 KQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEED 651

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGG 735
           + +M R   GV+  +  D  +  V+  +I E  +  +      Y +        +  RGG
Sbjct: 652 VRQMGRTAAGVKGITLTDDDV--VVGMEILEEDSHVLIVTENGYGKRTPASEYRVQSRGG 709

Query: 736 VGSLVPKGFPRSGKFLS 752
            G    K    +G  ++
Sbjct: 710 KGLKTCKITDSNGPLVT 726



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +  +  ++E      + +G  +           +  L AL  +E D L 
Sbjct: 565 EVEKGEWINAIIPVSTFDEEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELM 624

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    +I++ + +G     P  ++         ++  I L  +  +V   + +   
Sbjct: 625 AVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMGRTAAGVKG-ITLTDDDVVVGMEILEEDS 683

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENR 668
            +L+V+  G       SE    +R GK         S   +  V    G+  + ++  + 
Sbjct: 684 HVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSNGPLVTVKATKGEEDLMIITASG 743

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            L+   I+ I    R  +GVRL    D      +  
Sbjct: 744 VLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVAL 779


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/756 (32%), Positives = 408/756 (53%), Gaps = 31/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  +      KKSA
Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD S+Y+++VR+AQ F  R PLI G GNFG+IDGD AAA RYTE+R+
Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGMAT++P HN+
Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           QE+  A   +IDNP  ++E L+  + GPDFPTGGII+   + I ++Y+ GRG   +R++ 
Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIM-GTDGIKDAYKTGRGTLTIRSKV 370

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E  GR G   +V+TEIPYQV KS L E+IA+ +  K+I  + D+RDES      ++  
Sbjct: 371 HIENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVID 430

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P +++ +++  + ++T F +    L  G VP+ + L  +++ ++ H+++V+ RR
Sbjct: 431 LKQGAVPQVVLNNLYKRTQLQTSFSVIDIALVDG-VPRTLSLHDMIRYYIKHQQDVVTRR 489

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +    +RV IL+GLLIA  NIDE++ IIR+     + K  M  RF + + Q +AIL
Sbjct: 490 TKFDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFGIDDIQGEAIL 549

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L  L   ++ +++D L  +   +  LL + ++    I  E+ ++ E ++     
Sbjct: 550 QMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASP--- 606

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT     +   +    + +I +E + + +++  +I+          K     +  L 
Sbjct: 607 --RRTKIS--TNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQGLS 662

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD- 601
            K+ D ++    A T D +L  +  GK Y L    L   S    G A+  ++ L  ++  
Sbjct: 663 LKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDEHP 722

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
             ++T   +     L+  + +G       +E   + R G   + +   +++  V +V  G
Sbjct: 723 TAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCEG 782

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG-LTWIDSAG 716
           + + +     K ++FS + +   SR   GV+  S K+     ++  +I  G    +    
Sbjct: 783 NRIILCTSAGKAIMFSEEDVRPTSRNTSGVKGISLKNNAY--MLGMEISNGKGDLLVITE 840

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L  RGG G        + G  ++
Sbjct: 841 NGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGALVA 876



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 12/201 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                A +           V  + +G ++       D S      A++ K+GD L     
Sbjct: 719 DEHPTAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRR 778

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               +RI+L ++ GKA      ++     +   ++  I L +N  ++   + +    LLV
Sbjct: 779 VCEGNRIILCTSAGKAIMFSEEDVRPTSRNTSGVKG-ISLKNNAYMLGMEISNGKGDLLV 837

Query: 617 VSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           ++  G       SE     R G+      +       +   V      + ++ E   ++ 
Sbjct: 838 ITENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGALVACRVVGPQHELMIMSEEGVMIR 897

Query: 673 FSIDQIPEMSRGK-GVRLQSY 692
                I    R   GV++ + 
Sbjct: 898 VKSMDISSSGRATQGVKIMNL 918


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/802 (33%), Positives = 413/802 (51%), Gaps = 74/802 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I N +I+I++L+EYI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIA+L+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL +A  NIDEII +IR    P    +                
Sbjct: 364 RTIFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L++ ++    I  E+   ++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELIHILSNTERLMEVIREELEMARDNFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI-----DQ- 677
                +       G   + +  ++ +  V    G+  + +  ++ K++ F+      D+ 
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEG 715

Query: 678 -----IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                +  M R   GVR      G     +     +G   +      Y +          
Sbjct: 716 NVKGGVRPMGRTASGVRGMKLVKGDQVVSLIVPKTDGD-ILTVTENGYGKRTQLSEYPAK 774

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+GK + +
Sbjct: 775 SRATQGVVSIKVSERNGKVVGA 796



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 23/230 (10%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFSNVRANGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL--IDLNHNQDIVT 604
                   I+L S  GK        ++          R  G     +  + L     +V+
Sbjct: 685 EITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVKGGVRPMGRTASGVRGMKLVKGDQVVS 744

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDH 660
             V  +   +L V+  G     + SE  A +R   G   +KVS      +  V    GD 
Sbjct: 745 LIVPKTDGDILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSERNGKVVGAVQADEGDE 804

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             ++     L+   + ++ ++ R  +GV L    +G    V+  +  E L
Sbjct: 805 FMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEG--EKVVGLQRIEEL 852


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/793 (34%), Positives = 427/793 (53%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KK
Sbjct: 6   KEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VDF D Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNP+I+I +L+EYI GPDFPT  I +  R  I+++Y  GRG   +R+
Sbjct: 186 NLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAI-INGRAGIIDAYHTGRGKIYLRS 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +   G   IVVTE+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++
Sbjct: 245 RSHVETDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +   P++++ +++  S M+  F +NM  L   + P++  L   +  ++ HRREV+ 
Sbjct: 305 IELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQ-PRLFNLKDAIDAFVTHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    +  +L+GL IA  NID II +I+    PK                   
Sbjct: 364 RRTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVSTM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ Q  AIL+LRL  L  LE  +I  E  +LL 
Sbjct: 424 LARAGTEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLLG 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             E++  +L S ++    I  E+ EV+E F        RR+   E+  +        +I 
Sbjct: 484 LIEELLRILMSTERLLEVIREELEEVRENFGDE-----RRS---EILDSKLDLTIADLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++          +      SA   K+ D ++  L A T D IL  S+
Sbjct: 536 EEDVVVTLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSS 595

Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L  +GRG  G+ I  ++ L + + I        +     + + ++ G  
Sbjct: 596 TGKVYWLKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDKFVFMATANGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   L ++ ++++  VV+  G +H+ +  +  K++ F    +  M 
Sbjct: 656 KKTSLEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  +GVR     +G  + VI   + E   + + +    Y +        L  RGG G + 
Sbjct: 716 RTARGVRGMKLPEG--AKVIQMIVAEEDGSVLTATENGYGKRTAMEDHPLRGRGGQGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+G  +S+
Sbjct: 774 IQMSERNGAVVSA 786



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      ++    + +  G ++        +  S  + AL   + D L   
Sbjct: 626 ENGERINAILPIREFSEDKFVFMATANGTVKKTSLEQFSRPRSNGIIALTIADDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +    ++ I++ S  GK       N+         ++ +  L     ++   V +    +
Sbjct: 686 VETDGSNHIMMFSDAGKVIRFDEANVRGMGRTARGVRGM-KLPEGAKVIQMIVAEEDGSV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G        +     R G+  + +     +   +  V  + GD V ++ +   L
Sbjct: 745 LTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERNGAVVSAVPVIDGDEVMLISKGGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   +D I  M R  +GVRL    DG
Sbjct: 805 IRTGVDDIRIMGRNTQGVRLIKLDDG 830


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 426/759 (56%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+  +++   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      K
Sbjct: 5   KDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 65  KSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +++ ++++ VD+R  ++E   EP V PS+FPNLL NG++GIAVGMAT+IP 
Sbjct: 125 ARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ ++ + LID+ E  IE  +E+I GPDFPTGGII+   E I ++Y  GRG  +VR
Sbjct: 185 HNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIIL-GTEGIKDAYTTGRGKIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+ +G   I+V EIPYQV K+RLIEKIAEL+  K+I  + D+RDES  +   ++
Sbjct: 244 AKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  + +E  F + M  +  G+ P+V+ L  +L  +L H+++++ 
Sbjct: 304 IELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQ-PKVLNLKEVLTHYLNHQKDIIV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL IA  N+DE+I +IR  D     K  ++ +FSL+E Q  A
Sbjct: 363 RRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEKFSLSEKQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +++ E   L+     +  +L + +   + I  E+ E++E ++   
Sbjct: 423 ILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANERLLLDIIKEELLEIREKYADK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E++    +     ++++E + + +++ G+I+          K     +S 
Sbjct: 482 ----RRT---EIAIDPGSINMIDLVDEEDVVITLTHFGYIKRLPIDTYRSQKRGGKGISG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
           +  ++ D ++      T   +L  +  GK Y L    +  GR    G AI  L+ L+ N+
Sbjct: 535 VTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQAKGTAIVNLLQLSANE 594

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I      D   +   L++ + KG     E  +     + G   + +  ++++  V  + 
Sbjct: 595 KIAAVIPVDRDCNEQYLVMATQKGIIKKTELCQFDNTRKTGLMAINIREDDELISVRLIN 654

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLTWIDS 714
               + ++      + F  D + +M R   GV+  +  +     V+  ++ E     +  
Sbjct: 655 KEQEIFMITSQGMSIRFKEDNVRDMGRTAMGVKGINLAEKDY--VVAMEVLEDNKDLLVV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +  +     L  RGG G    K   ++G  + +
Sbjct: 713 SENGLGKRTDLSEYRLQTRGGKGIKTYKVSKKTGNLIGA 751



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
            +    A +       E   V+ + +G I+         +    L A++ +E D L    
Sbjct: 592 ANEKIAAVIPVDRDCNEQYLVMATQKGIIKKTELCQFDNTRKTGLMAINIREDDELISVR 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             +    I ++++ G +      N+         ++  I+L     +V   V +    LL
Sbjct: 652 LINKEQEIFMITSQGMSIRFKEDNVRDMGRTAMGVKG-INLAEKDYVVAMEVLEDNKDLL 710

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLL 671
           VVS  G     + SE    TR GK          +   +   +    D + ++     ++
Sbjct: 711 VVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSKKTGNLIGAKIVEDHDEILLMTNEGIVI 770

Query: 672 IFSIDQIPEMSRG-KGVRLQS 691
             ++  I +M R  +GV L +
Sbjct: 771 RLNVKGISKMGRATRGVTLMN 791


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 427/757 (56%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+     + KS
Sbjct: 9   KILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+ +GK HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 69  ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++ + +L  +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN
Sbjct: 129 MSKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ E  +A IDNPEI I++L+ YI GPDFPTG   +   E I+ +YR G+G FR RA+
Sbjct: 189 LTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGA-SIMGTEGIISAYRTGKGSFRTRAK 247

Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VEE+ + G   I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES      ++ 
Sbjct: 248 AHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVM 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +L+  ++  + ME  F +N+  L  G+ P+V+ L  I+  ++ H+++V+ R
Sbjct: 308 ELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +   +    IL+GL IA   IDE+I+IIR        K  ++SRF L++ Q  AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL+ L  LE  +I+ +   +      + ++LNS +   N I  E++EVKE F     
Sbjct: 427 VDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E+S        + +I+ E + + +S+RG+I+          +     +  +
Sbjct: 485 ---RRT---EISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGM 538

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +E D ++      T   IL  +T GK Y L A  +      G G A+  L+ +N +++
Sbjct: 539 ATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEE 598

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +TA +    Y+    L + + KG        E  +  + G   + +S ++++  V    
Sbjct: 599 KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTK 658

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D H+ +  +N   + F    + +M R   GV+  S +   +   +     E    +   
Sbjct: 659 PDEHIIIATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVIYEEEAEILSMT 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +++  +     +  RGG G +  K   ++GK + 
Sbjct: 719 ELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVG 755



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 67/200 (33%), Gaps = 13/200 (6%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + + +G ++       D      L A+     D L         + I++ + +G     
Sbjct: 616 FMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
              ++         ++  I L     +V+   +Y+   ++L ++  G +     SE    
Sbjct: 676 LESDVRQMGRTAHGVKG-ISLEKEDLVVSMDVIYEEEAEILSMTELGFSKRTSLSEYRVQ 734

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  +      K    + L V    + + ++ E+  ++   +  I +  R  +GV  
Sbjct: 735 GRGGKGIIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMA 794

Query: 690 QSYKDGGISDVICFKICEGL 709
               +  +  +      E  
Sbjct: 795 MRTGESKVVAIAVVDNKEDA 814


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/770 (48%), Positives = 519/770 (67%), Gaps = 26/770 (3%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+   + E    + +       ALEERYL YALSTI  R++PDLRDG KPVHRR++  M
Sbjct: 1   MSDPTEITEPDPFDAIVDAPFDSALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ LD    FKKSAR+VGEVIGK HPHGD + YD++VRLAQ F  RYPL+ GQGNFGNI
Sbjct: 61  RQLKLDPTNTFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+AAAYRYTEAR+T+ A  ++ G+DE  VDF  TYN E+ EP + P  FPNLLANG S
Sbjct: 121 DGDNAAAYRYTEARLTRTAMALMAGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGAS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IPSHNV EI +A L LIDNP +   +L+E   GPD PTGG+IV+S E I  
Sbjct: 181 GIAVGMATNIPSHNVHEIIDATLELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISN 240

Query: 242 SYRLGRGGFRVRARWC-------------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           +Y  GRG FR+R R+              +E +G G W +V++EIPYQVQK +LIE+IA+
Sbjct: 241 AYETGRGSFRIRGRFHAAEAEKQADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQ 300

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            I  K++P+L+D+RDES E +RIVL P++R++DP+LL ESI+ L+DMETRF LN+NVL  
Sbjct: 301 AIADKKLPILDDVRDESDEQIRIVLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDA 360

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
            R P VM L  +L+ W+  + E+L RR+  R+  I RR+E+++G +IA+LN+D +I IIR
Sbjct: 361 TRTPMVMGLKELLENWVRSQIEILQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIR 420

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            ED+PK VM++ FSLT+ Q +AILN+RLRSLRKLEE ++K E  +LLAE+E+++ LL S 
Sbjct: 421 YEDEPKQVMMAEFSLTDRQAEAILNMRLRSLRKLEEMELKQEKTDLLAEQEELEKLLGSP 480

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q  ++  +++ +++ +   T+LG RRTT  E           AMIEKEP+TVV+S +G
Sbjct: 481 ARQRTRLKRDLKALQKEYGLDTELGARRTTIAEAEPT-VEFSMDAMIEKEPVTVVLSQKG 539

Query: 529 WIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           W+R+ K H              +KEGD    A+H  TTD++LL + +G+ +TL A  L  
Sbjct: 540 WVRAAKGHVDLEGSKDGCGDFKYKEGDGPAFAVHCQTTDKVLLAADNGRFFTLGADKLPG 599

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG GE ++  +D++    IV   V +   +LL+ +  G  F  E  E++A TRKGK  +
Sbjct: 600 ARGFGEPVRNTLDIDAEAQIVAMLVSNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVV 659

Query: 643 KVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
            +  + K+++V  +    DHVAVVGENRKL++F+++++P ++RG+GV+LQ Y+DGG+SD 
Sbjct: 660 NLKGDAKLRVVRPIADCDDHVAVVGENRKLVVFNLEELPVLARGQGVQLQRYRDGGLSDA 719

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             F + +GL+W         R+E D+  W   RGG G L P+GFPR  +F
Sbjct: 720 KTFVLDQGLSWQMGGKGDRTRTETDIWQWKVARGGAGRLPPQGFPRDNRF 769


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 406/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGG-FIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 404/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  ++E F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIREQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAESDSVVSLIVPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  V      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAESDSVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/808 (31%), Positives = 405/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ +P+ ++++++E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------- 413
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQL 419

Query: 414 --------------------KPVMVSR---------FSLTENQVDAILNLRLRSLRKLEE 444
                               +P  + R         + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L+  ++    I  E+  +K  F +   LG RRT    V  
Sbjct: 480 DKIVAEYKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQH-KLGMRRTL---VEH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 13/195 (6%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + ++ G ++              + A++  +GD L  A        ++L S
Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFS 714

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIV 626
             GKA      ++         ++ ++ L   Q ++   V  D T  +L  +  G     
Sbjct: 715 DGGKAVRFDENDVRPLGRAARGVRGMM-LEDGQSVIAMLVAEDETQSVLTATENGYGKRT 773

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
              E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ 
Sbjct: 774 SIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELG 833

Query: 683 RGK-GVRLQSYKDGG 696
           R   GV L +  +G 
Sbjct: 834 RATQGVTLIALDEGA 848


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/797 (31%), Positives = 409/797 (51%), Gaps = 63/797 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L  +    VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+
Sbjct: 2   TDHLFAKETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+AAA
Sbjct: 62  NRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A LAL+ N +++I++L++ I  PDFPT GI +     + E YR GRG
Sbjct: 182 TNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGI-IYGLAGVREGYRSGRG 240

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE++GRG    +++ E+PYQV K+ L+ KI EL+  K I  + D+RDES +
Sbjct: 241 RVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDLRDESDK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R   PD+++ +++  + ++  F +NM  L  G+ P+++ L  IL+E+L H
Sbjct: 301 SGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS-- 422
           RREV+ RR+ F ++    R  +L+GL +A  N+DEIIA+I+    P   K  +++R    
Sbjct: 360 RREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMARQWRS 419

Query: 423 --------------------------------LTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                           L+E Q  AIL LRL+ L  LE+ +I +E
Sbjct: 420 PLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQDKIVAE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
             +++     +  +L   ++    IA E+ ++K  F          T   E+        
Sbjct: 480 YRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGD--------TRRSEIEPFGGDIN 531

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  + + V +S+ G++++         +       A   K+ D ++    A+T D 
Sbjct: 532 LEDLITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDF 591

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  S+ G+ Y L    L   S +  G+ I  L+ L   + I        +  T  + + 
Sbjct: 592 LLCFSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPVKGFSDTEYVFMA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           +++G       S        G   + +   + +      +G+  V +  +  K + F   
Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +  M R  +GVR     D      +     E    + +    Y +          +RG 
Sbjct: 712 DVRPMGRNARGVRGMELGDAQQVIGMLVSNEETSQVLTATANGYGKRTPIGDYRKSRRGT 771

Query: 736 VGSLVPKGFPRSGKFLS 752
            G +      R+G  ++
Sbjct: 772 QGVIAIDTGERNGALVA 788



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               A L            + + RG ++           S  + A+   EGD L  A   
Sbjct: 631 EKINAILPVKGFSDTEYVFMATARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVT 690

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                ++L S  GKA      ++     +   ++ +   +  Q I      + T ++L  
Sbjct: 691 SGNSEVMLFSDAGKAVRFDEADVRPMGRNARGVRGMELGDAQQVIGMLVSNEETSQVLTA 750

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIF 673
           ++ G        +   + R  +  + + + E+    + + +    D + ++     L+  
Sbjct: 751 TANGYGKRTPIGDYRKSRRGTQGVIAIDTGERNGALVAVALVADSDELMLMTTGGVLIRT 810

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            + ++ E  R   GVRL +  D G   V   KI E 
Sbjct: 811 RVSEVRETGRAAQGVRLINL-DAGEQLVSLEKIAES 845


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/790 (31%), Positives = 400/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------------- 422
            R  +L+GL +A  NIDE IAII+    P   K  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASA 418

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 387/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEIS + L+E+I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAG-RPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EV
Sbjct: 418 FDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----VRRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L     +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G + + +   N +   F    I  M R   GVR     + G  +V+ 
Sbjct: 650 NEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 703 FKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +       T +  +   Y +        L  RGG G        ++GK ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 762



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 87/224 (38%), Gaps = 16/224 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  + +G ++     +        + A++  EGD +      +  + +
Sbjct: 608 LDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGHNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           ++   +G+A      N+ +       ++ + +D +   ++V   V +      ++VVS +
Sbjct: 668 IIADRNGRACRFDESNIRTMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMVVSEE 727

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++  S+ 
Sbjct: 728 GYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIRMSVA 787

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           +   M R   GVRL +   K+  I+ V      E  + ++   R
Sbjct: 788 ECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMESQVEDDSR 831


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/777 (30%), Positives = 394/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D     +    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++G
Sbjct: 122 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    ++N E   E     ++E I GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  +
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ +  H+ EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q   
Sbjct: 420 AGLMELLDVDEIQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ + +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIVDKYGD-----DRRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +       T D +L  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V  +  D + +V    + + FS     +  M R   GV+   +   G 
Sbjct: 652 INLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF--NGD 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +     ++ +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSADDDLLLVSAQGQSIRFSATD-EALRPMGRATSGVQGMRFNGDDELLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G +      +     R GK  L +        +   + V  D     +    
Sbjct: 723 FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVDDDDELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +  Q+ +  R  KGVRL +  +G     I     E
Sbjct: 783 GVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAIARNADE 822


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 414/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR+   P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++           S  L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/812 (33%), Positives = 412/812 (50%), Gaps = 85/812 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALID PE+SIE+L+EYI GPDFPT    +  R+ I E+YR GRG   +RA
Sbjct: 186 NLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAA-FISGRKGIEEAYRTGRGKIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVV EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + M+T F +NM  L     P+V  L  IL+ ++ HRREV+ R
Sbjct: 305 EVKRNESGEVLLNHLYSQTQMQTVFGINMVAL-DKTQPKVFNLLEILQAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID IIA+I+    P                     
Sbjct: 364 RTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I SE   LL  
Sbjct: 424 ERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ ++++ F        RRT   E++ A      + +IE+
Sbjct: 484 IAELLHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIER 535

Query: 518 EPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S  G+++  K              SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ G   
Sbjct: 596 GRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEEGKYVLMATANGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------- 676
                +       G   + ++  +++  V    G   + +  +  K++ F+         
Sbjct: 656 KTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETG 715

Query: 677 -------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
                         +  M R   GVR    +DG    V+   + +G    + +    + +
Sbjct: 716 AVKIDPETGEEILALRPMGRTATGVRGIRLQDG--QKVVSLIVPQGDGAILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPVEDYPAKSRATQGVVSIKVSERNGKVVGA 805



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 32/233 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+    ++ +  G ++        +  +  + A++  +GD L   
Sbjct: 625 EANERITAILPIQEFEEGKYVLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLL------------ID 595
                +  I+L S  GK          S  G        GE I  L            I 
Sbjct: 685 DITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIR 744

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKL 652
           L   Q +V+  V      +L  +  G        +  A +R   G   +KVS    K+  
Sbjct: 745 LQDGQKVVSLIVPQGDGAILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVG 804

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            V+V   D + ++ +   L+   + ++  + R  +GVRL   + G    V+  
Sbjct: 805 AVQVNDSDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLI--RTGEDEHVVGL 855


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/753 (33%), Positives = 417/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   S++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   +VVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQE--QETVITLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE     + GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTGKSGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRSAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  K   ++G+ +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYKVTEKTGRIV 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 13/232 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSL---- 533
           +R  +         G       ++ + +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +      A+   + DSL         D I+L+S++G        ++ S     + ++
Sbjct: 628 FENTGKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRSAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     EK  
Sbjct: 688 GM-TLEDGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTEKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +V +      D + +       +   + QIP   R  +GV+L       I 
Sbjct: 747 RIVDIKMVNDEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIK 798


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/784 (34%), Positives = 404/784 (51%), Gaps = 60/784 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   +KKS
Sbjct: 7   NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M Q+A  +L  ++++ VD    Y+   +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A I NP IS E+LL  + GPDFPTGG  +  RE I++ YR GRG  ++RAR
Sbjct: 187 LSEVIDGIIATIGNPHISFEELLALVPGPDFPTGG-FIYGREGILQGYRTGRGIVQMRAR 245

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   +     IVVTEIPYQV K+ LI KIAEL+  K++  + DIRDES  D   ++ 
Sbjct: 246 ASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  + M+T F +NM  +  G  P+V+ L   +  ++ HRRE++ R
Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAG-RPKVLTLQDAIGHFIDHRREIVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R+ F ++  + R  IL+G  IA   +D +I +IR    P        S            
Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKM 424

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LTE Q   ILNLRL  L  LE  +I  E +++L    ++  +L 
Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILA 484

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+RE+KE F        RRT   E+         +  I +E + V +S+
Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRT---EIVDRSAEISLEDTIVEEDVVVTVSH 536

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      + +  KE D ++    A + D +L  +  GK Y +   
Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596

Query: 579 NLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +  G     G+AI  L++L  N+ I        +D    +L+ +  G        E   
Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDERNILMATRLGVVKKSPLREYAN 656

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +  E+K+  V    G   V +   N K + F  +    M R  +GVR  +
Sbjct: 657 IRSGGIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMGRVSRGVRGMT 716

Query: 692 YKDGGISDVICFKI----CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +D  +  VI  ++      G T        + +        +  RGG G +  K   R+
Sbjct: 717 LEDDDV--VIGMEVINPSATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN 774

Query: 748 GKFL 751
           G  +
Sbjct: 775 GCVV 778



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 21/233 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L     + E   ++ +  G ++              + A++  E D L   
Sbjct: 617 QENEQITAILSVKGFDDERNILMATRLGVVKKSPLREYANIRSGGIIAVNLDEEDKLIAV 676

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                   +LL S +GK  ++        R  G   + +  + L  +  ++   V + + 
Sbjct: 677 ALTDGRQDVLLASRNGK--SIRFHE-EDARPMGRVSRGVRGMTLEDDDVVIGMEVINPSA 733

Query: 613 K---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVG 665
               +  V+  G     E  E    +R GK  + + + E+   VV        + + ++ 
Sbjct: 734 TGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVVDIMQVTDENDLMLIT 793

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
           +  K+L   +     + R  +GVRL + +  +  ++     +  EG    DS 
Sbjct: 794 DQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDSG 846


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/794 (33%), Positives = 416/794 (52%), Gaps = 67/794 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRAEYGD-----VRRT---EILDARLDLTLGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK Y L    +   S    G  +  L+ L+  + I T      Y     + + ++ G 
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  V +  +  K+  F    +  M
Sbjct: 656 VKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM 715

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R Y +          KRGG G +
Sbjct: 716 GRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASARGYGKRTAISEFPEYKRGGQGVI 773

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 774 AMVSNDRNGRLVGA 787



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +        L      +     + +  G ++        +  SV L AL   EGD L  A
Sbjct: 627 DDGEYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 687 AITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S++G       SE     R G+  + + S ++    +  V  + G+ + ++ +   L
Sbjct: 746 LTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 806 VRTRVAEVSSLGRNTQGVTLIKLASD 831


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/790 (33%), Positives = 408/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+ 
Sbjct: 426 RAGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLRILASSERLMEVIREELELIRDQFGDK-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     +G   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYAEGWNIFMATASGTVKKTALTEFSRPRSAGIIAVNLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                +D  +L S  GK        +   R  G     +  I L     +V+  V     
Sbjct: 686 SLTDGSDEAMLFSAAGKVVRFAESAV---RAMGRTASGVRGIKLAEGDRVVSLIVPRDDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            ++ V+  G       +E    +R   G   +KV+      +  V  V GD + ++ +  
Sbjct: 743 AIMTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGS 854


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/790 (33%), Positives = 408/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I +  I++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+ 
Sbjct: 426 RAGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLRILASSERLMEVIREELELIRDQFGDK-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              ++       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALTDFSRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     +G   +      Y +   ++      R   G +  K 
Sbjct: 718 ASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANVEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYAEGWNIFMATASGTVKKTALTDFSRPRSAGIIAVNLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              + +D  +L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 SLTNGSDEAMLFSAAGKVVRFAESAVRTMGRTASGVRG-IKLAEGDRVVSLIVPRDDGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           + V+  G        E    +R   G   +KV+      +  V  V GD + ++ +   L
Sbjct: 745 MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGS 854


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/767 (31%), Positives = 406/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+E++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGG-FIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IV+TEIPY V K+ LI+ IA+L+  K+I  + +  DES  D   
Sbjct: 241 MRAKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LKTESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLKTESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 420/760 (55%), Gaps = 32/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                        +   ++    + +++ E + V +++ G+I+          K     +
Sbjct: 478 PRK--------TNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +  
Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQ 589

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + +        +     +++ + KG        E  +  R G   + +   +++     
Sbjct: 590 GEKVTAVIPLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKL 649

Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWI 712
             G+   ++G      + F+   I  M R  KGV   S ++    +V+   +   G   +
Sbjct: 650 TNGEREIIIGTAKGYAIRFNEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPGSEIL 707

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +  +     L  R G G +  +   ++GK +S
Sbjct: 708 VVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 622 IEEFRSI-----KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKD---- 672

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++  G       
Sbjct: 673 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDL 720

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ SEI    R 
Sbjct: 721 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRD 780

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 781 TRGVTLMKLDDGDRVVSTARIENEE 805


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 414/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR+   P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++           S  L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/788 (31%), Positives = 392/788 (49%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 22  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 81

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 82  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAR 141

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 142 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 201

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A LAL+ NPE ++++L+E I  PDFPT GI +     + E YR GRG   +R R  V
Sbjct: 202 VIAACLALLKNPETTVDELIEIIPAPDFPTAGI-IYGTVGVREGYRTGRGRVVMRGRTHV 260

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    ++V E+PYQV K   +EKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 261 EDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 320

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 321 RGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTV 379

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---------------- 421
           + ++    R  +L+GL +A  N+DE+IA+I+    P                        
Sbjct: 380 YELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVEEMLKRA 439

Query: 422 ---------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 440 AMEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIAD 499

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  +   F        RR+   E+    +    + +I  + +
Sbjct: 500 LLDILARSERVTQIIVEELTAILNQFGDK-----RRS---EIVHNAQDLSLEDLITPQDV 551

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+++S         +       A   KE D +     A+T D IL  S+ G+ 
Sbjct: 552 VVTLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRV 611

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    +  G     G+ I  L  L   + I        +D    + + ++KG      
Sbjct: 612 YWLKVYEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFDENHFVFMATAKGTVKKTA 671

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            +E     R G   L +   + +       G + + +V    K + F  + +  M R  +
Sbjct: 672 LTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPMGRAAR 731

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR    +       +     +  T + +    Y +           RG  G        
Sbjct: 732 GVRGMKLQGKQQVISLLIADNDKQTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSE 791

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 792 RNGIVVGA 799



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 80/207 (38%), Gaps = 13/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     ++     + + +G ++              + AL+  +GD L  A
Sbjct: 638 EDGEKINAILPVKEFDENHFVFMATAKGTVKKTALTEFSNPRRSGIIALNLDDGDYLIGA 697

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
              +  + I+L+S  GKA      ++         ++ +  L   Q +++  + D+  + 
Sbjct: 698 EVTNGVNDIVLVSNGGKAVWFDEEDVRPMGRAARGVRGM-KLQGKQQVISLLIADNDKQT 756

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRK 669
           +LV +  G       ++   + R  +G   +  S    + +  ++ GD   + ++     
Sbjct: 757 VLVATENGYGKRTVLADFRHSGRGTQGVKAIATSERNGIVVGARLVGDDDEIMLITTGGV 816

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           L+   + +I E+ R   GV L +  +G
Sbjct: 817 LIRTRVKEIRELGRATQGVTLINLGEG 843


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 412/819 (50%), Gaps = 84/819 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NP+ SI++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPDASIDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P   K  ++ +      
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T   V  
Sbjct: 480 DKIVAEYKDIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST---VEY 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+        S K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    + SG     G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHYVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-----------TWIDS 714
             K + F  + +  M R  +GVR  + ++    +VI   + E             + + +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEE--HQNVIAMLVAEADDGTGNVVAGSQSVLTA 773

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK +++
Sbjct: 774 TENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 73/203 (35%), Gaps = 22/203 (10%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPEDHYVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVS 618
            GKA      ++     +   ++ + ++  +Q+++   V ++             +L  +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTAT 774

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       SE   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 775 ENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVLVRTR 834

Query: 675 IDQIPEMSRGK-GVRLQSYKDGG 696
           + +I E+ R   GV L +   G 
Sbjct: 835 VAEIRELGRATQGVTLINLDAGA 857


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 420/760 (55%), Gaps = 32/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     
Sbjct: 1   MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RY
Sbjct: 61  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   
Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   
Sbjct: 240 VRAKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V
Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q 
Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++ 
Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                        +   ++    + +++ E + V +++ G+I+          K     +
Sbjct: 478 PRK--------TNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +  
Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQ 589

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + +        +     +++ + KG        E  +  R G   + +   +++     
Sbjct: 590 GEKVTAVIPLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEENDELINTKL 649

Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWI 712
             G+   ++G      + F+   I  M R  KGV   S ++    +V+   +   G   +
Sbjct: 650 TNGEREIIIGTAKGYAIRFNEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPGSEIL 707

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +  +     L  R G G +  +   ++GK +S
Sbjct: 708 VVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 747



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 622 IEEFRSI-----KRNGIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKD---- 672

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++  G       
Sbjct: 673 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDL 720

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ SEI    R 
Sbjct: 721 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSEISKMHRD 780

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 781 TRGVTLMKLDDGDRVVSTARIENEE 805


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/754 (37%), Positives = 444/754 (58%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   +A  +  ++  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVERAE-ARALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
            +A V    +LL+F +  +P++ +GKG ++       ++      V    +  G T +  
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           AG R+ +    DL  + G+RG  G+ +P+GF R 
Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQRV 743


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/819 (31%), Positives = 411/819 (50%), Gaps = 84/819 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NPE SI++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P   K  ++ +      
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T   V  
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST---VEY 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+        S K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    + SG     G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-----------TWIDS 714
             K + F  + +  M R  +GVR  + ++    +VI   + E             + + +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEE--HQNVIAMLVAEADDGTGNVVAGSQSVLTA 773

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK +++
Sbjct: 774 TENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 22/203 (10%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVS 618
            GKA      ++     +   ++ + ++  +Q+++   V ++             +L  +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTAT 774

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       SE   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 775 ENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVLVRTR 834

Query: 675 IDQIPEMSRGK-GVRLQSYKDGG 696
           + +I E+ R   GV L +  +G 
Sbjct: 835 VAEIRELGRATQGVTLINLDEGA 857


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/768 (34%), Positives = 416/768 (54%), Gaps = 31/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N+ +++    VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI++A  E+ 
Sbjct: 1   MSEQNSGIQQP--QVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELA 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
             +    KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGD+
Sbjct: 59  NSYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDA 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAV
Sbjct: 119 AAAMRYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+C+A   L+D+P+ +I  L+E + GPDFPT G +   +  + ++Y  
Sbjct: 179 GMATNIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGK-GLSDAYHT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VR R  VEE  +G   IV+ EIP+ + KS L+EKIA L+   +I  + D+RDES
Sbjct: 238 GRGTVKVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R   PD+++ S++  + +ET F +NM  +     P ++ L   L  ++
Sbjct: 298 DRKGIRVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDN-RPVLLNLKTALSCFV 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            HRREV+ RR+ + +Q  + R  IL+GL IA  +IDE++A+IR     D+ +  ++ RF 
Sbjct: 357 DHRREVVIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQRFE 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  L+  ++ +E   LL + E   S+L + +   +++  EIRE+
Sbjct: 417 LSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFKSVLENPEVLRSELKREIREI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLK 534
           +E F+       RRT     + A      + +I  E + + +S RG+++          K
Sbjct: 477 RETFATP-----RRTEVL--TDALGGIDIEDLIPDEEVVITLSRRGYMKRTSLENYQQQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                ++ALH  + D ++  L       + L +  G+ + L    +   S    G  I  
Sbjct: 530 RGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T      +      L V+ +G       S      + G   + +  +++
Sbjct: 590 LLPLEEGEWVTTVLAVREFAEDKYFLFVTKRGMVKRSSASLYARCRKSGLMAVGLREDDE 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKI 705
           + +V  +  D H+ +   +   + F+   +  M R   GV+  + +  D  ++ VI  + 
Sbjct: 650 LVVVRPIREDSHIVLATADGYSIRFACKDVRPMGRVATGVKGIALRRQDVVVAGVILKEN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    +  +   + +     L  L  RGG G +  K   ++G  + +
Sbjct: 710 DQTTEIMSISANGFGKRTRVDLYRLQSRGGKGIINFKVTSKTGPVVGA 757



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 16/222 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   + ++ RG ++        +     L A+  +E D L + 
Sbjct: 594 EEGEWVTTVLAVREFAEDKYFLFVTKRGMVKRSSASLYARCRKSGLMAVGLREDDELVVV 653

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTC 612
                   I+L + DG +      ++         ++ +     +  +    +   D T 
Sbjct: 654 RPIREDSHIVLATADGYSIRFACKDVRPMGRVATGVKGIALRRQDVVVAGVILKENDQTT 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
           +++ +S+ G             +R GK  +      K   VV        D + ++    
Sbjct: 714 EIMSISANGFGKRTRVDLYRLQSRGGKGIINFKVTSKTGPVVGAMPVRDNDGLIMLTSAN 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEG 708
           K++   ++ +    R   GV L    +G  + V+ F  + EG
Sbjct: 774 KVVRIGVEDVRSKGRATMGVMLVRLDEG--AHVVGFDRVDEG 813


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/777 (30%), Positives = 394/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D     +    + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EP V PS+ PNLL NG++G
Sbjct: 122 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSNG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    ++N E   E     ++E I GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  +
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ +  H+ EV+ RR+ + ++    R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   ++ +L   ++Q   
Sbjct: 420 AGLMELLDVDEIQADAILGMQLRRLAALERQKIVDELAEIELEIADLEDILARPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ + +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIVDKYGD-----DRRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +       T D +L  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTKGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V  +  D + +V    + + FS     +  M R   GV+   +   G 
Sbjct: 652 INLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF--NGD 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +     ++ +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSAEDDLLLVSAQGQSIRFSATD-EALRPMGRATSGVQGMRFNGDDELLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G +      +     R GK  L +        +   + V  D     +    
Sbjct: 723 FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVDDDDELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +  Q+ +  R  KGVRL +  +G     I     E
Sbjct: 783 GVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAIARNADE 822


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/803 (32%), Positives = 413/803 (51%), Gaps = 66/803 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +S ++ E    +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ 
Sbjct: 27  MRDSGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNV 86

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DG
Sbjct: 87  LGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDG 146

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGI
Sbjct: 147 DSAAAMRYTEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGI 206

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I++ +ISIE L+E+I GPDFPT  I +  R  I+++Y
Sbjct: 207 AVGMATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAI-INGRRGIIDAY 265

Query: 244 RLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           R GRG   +RA   VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +R
Sbjct: 266 RTGRGKVYIRASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALR 325

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R    ++++ +++ L+ ++  F +NM  L     P+++ L  I+ 
Sbjct: 326 DESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKILNLKDIIA 384

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P         
Sbjct: 385 AFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIA 444

Query: 417 -------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                             ++ LTE Q  AIL+LRL+ L  LE  
Sbjct: 445 RSWDLGNVAAMLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHE 504

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E  +LL + E +  +L S ++    I  E+  +++ ++       RRT   E++  
Sbjct: 505 KLLEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYNDP-----RRT---EITEN 556

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I +E + V +S++G+++          +      SA   K+ D ++  L A
Sbjct: 557 TADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVA 616

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D IL  S+ G+ Y +    L        G  I  L+ L  ++ I        Y+   
Sbjct: 617 NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY 676

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            + + ++ G        E       G   + ++  +++  V    G + V +     K++
Sbjct: 677 NVFMATASGTVKKTPLQEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVV 736

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
            F+ D +  M R   GVR     D      +     EG   +      Y +   +     
Sbjct: 737 RFAEDAVRPMGRTATGVRGIKLMDNDKVVSLIIPRGEGH-ILTVTENGYGKRTEEAEYPT 795

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 796 KSRATQGVISIKVSERNGNVVGA 818



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 658 EQDERITAILPVREYEEGYNVFMATASGTVKKTPLQEFSRPRSAGIIAVNLNEGDELIGV 717

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK        +         ++  I L  N  +V+  +      +
Sbjct: 718 DLTDGSNEVMLFSAQGKVVRFAEDAVRPMGRTATGVRG-IKLMDNDKVVSLIIPRGEGHI 776

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     EE+E    +R   G   +KVS      +  +     D + ++ +   L
Sbjct: 777 LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITDAGTL 836

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 837 VRTRVSEVSVVGRNTQGVTLIRTAED 862


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 419/764 (54%), Gaps = 32/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N     N+K  ++   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   DENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIV 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPL+ G GNFG++DGD AA
Sbjct: 62  ADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D VD+ D Y+ E+ EPVV P +FPNLL NGT+GIAVGM
Sbjct: 122 AMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E  +A  A++DNP+I++ +L+E YI GPDFPTGG I+  R  I ++Y  G
Sbjct: 182 ATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYIL-GRAGIKQAYETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R++  VE++  G   I+VTEIPY V K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    + +  D+++  ++ ++ ++T F +NM VL     PQ + L  +LK +L 
Sbjct: 301 MEGIRIVIELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNA-PQQLGLKDVLKCYLD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V  RR+ F ++  + R  IL+GL IA  +ID II++IR+          ++  F L
Sbjct: 360 HQIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMENFGL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL+++ R L  LE  +I+ E D+L+A+   +  +LN+  +    I  E+ E+K
Sbjct: 420 SEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNHSRVLEIIRSELTEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E ++       RR+   E+  A+     + +I +E + + ++  G+++            
Sbjct: 480 EKYNDK-----RRS---EIIDAEIDMQDEDLIPQEDVVITMTVNGYVKRIPVDTYRLQNR 531

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               +  +   E D +   L   T D +L+ +  GK Y +    +   S    G  I  L
Sbjct: 532 GGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSKGIPIVNL 591

Query: 594 IDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++L+ ++ ++     +        L  V+++G    V   E     + GK  + +   ++
Sbjct: 592 LNLDKDEKVLAMVPVERENSPAKFLFFVTAQGIVKRVPIEEFENIRQSGKIAINLREGDE 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +      TG   + +   N + + F+   +  M R   GV+  +     +  +      E
Sbjct: 652 LISAKPTTGSSQILIAAANGQAIRFNETDVRPMGRTATGVKGFNVNGSRVIGMT--TDFE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           G   +    + Y +        +  RGG G    +   ++G  +
Sbjct: 710 GQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKNGPLV 753


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/819 (31%), Positives = 412/819 (50%), Gaps = 84/819 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  +SEP+V PS+ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L+ NPE SI++L+E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++ L+ ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P   K  ++ +      
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  ++++  E +  +L   ++    I  E+  VK  F +S   G RR+T   V  
Sbjct: 480 DKIVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST---VEY 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+        S K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D +L  S  G+ Y L    + SG     G  I  +  L   + I            
Sbjct: 596 ANTHDYLLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           +     + + +S G       +E     + G   + +   + +       G H V +  +
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-----------TWIDS 714
             K + F  + +  M R  +GVR  + ++    +VI   + E             + + +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMNIEE--HQNVIAMLVAEADDGTGNVVAGSQSVLTA 773

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +           RG  G +  +   R+GK +++
Sbjct: 774 TENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAA 812



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 22/203 (10%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST----------CKLLVVS 618
            GKA      ++     +   ++ + ++  +Q+++   V ++             +L  +
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGM-NIEEHQNVIAMLVAEADDGTGNVVAGSQSVLTAT 774

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674
             G       SE   + R  K  + +   E+   VV  T     D + ++ +   L+   
Sbjct: 775 ENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVLVRTR 834

Query: 675 IDQIPEMSRGK-GVRLQSYKDGG 696
           + +I E+ R   GV L +  +G 
Sbjct: 835 VAEIRELGRATQGVTLINLDEGA 857


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/790 (33%), Positives = 406/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I +  I++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSSERLMEVIREELELIRDQFGDK-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              ++       G   + +  ++++  V   +G D   +     K++ F+   +  M R 
Sbjct: 658 TALTDFSRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     +G   +      Y +   ++      R   G +  K 
Sbjct: 718 ASGVRGIKLAEGDRVVSLIVPRDDGA-IMTVTQNGYGKRTANVEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYAEGWNIFMATASGTVKKTALTDFSRPRSAGIIAVNLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D  +L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 SLTSGSDEAMLFSAAGKVVRFAESAVRTMGRTASGVRG-IKLAEGDRVVSLIVPRDDGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           + V+  G        E    +R   G   +KV+      +  V  V GD + ++ +   L
Sbjct: 745 MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGS 854


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/779 (30%), Positives = 396/779 (50%), Gaps = 37/779 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+   +   V + ++ V ++  ++  YL YA+S I  RA+PD+RDG KPVH+R+++AM
Sbjct: 12  GGDSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAM 71

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR+VG+V+G  HPHGD ++YD+LVRLAQ +  R PL+   GNFG+ 
Sbjct: 72  YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSA 131

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTE ++  +A  +L+ +D+D VDFR  Y+   SEPVV P++FPNLL NG+S
Sbjct: 132 GNDPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSS 191

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ +     +DNPE   E+LL+     + GPDFPT G+IV  + 
Sbjct: 192 GIAVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIV-GKR 250

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I E+YR GRG   +RA   VEE  RG   +VVTE+PYQV    L  KIA+L+   +I  
Sbjct: 251 GIEEAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITG 310

Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDES+    + ++    R     +++ +++  + ++  F  NM  L  G VP+ + 
Sbjct: 311 IADVRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLR 369

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKP 413
           LD +++ W+ H+ EV+ RR+ + ++  + R  IL+ LL A   IDE+I +IR     D+ 
Sbjct: 370 LDQMIRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQA 429

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + + Q  AIL+++LR L  LE   + +E D L+A+    + +L S  +Q +
Sbjct: 430 RTGLMDLLEIDDIQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDILESDTRQRS 489

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---- 529
            I  E+ E+ E +        RRT        +     +  I +E + V IS  G+    
Sbjct: 490 IIREELGEIVEKYGDE-----RRTHII---PFEGDMRMEDFIAEEDVVVTISRGGYAKRT 541

Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR- 584
                R+ K     +     K+ D ++      T + IL  +  G+ Y   A  L     
Sbjct: 542 RIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEAAR 601

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     ++I        Y++   L++ + +G        +  +    G  
Sbjct: 602 DARGQHVANLLPFQPGEEIAQIMALRDYEAAPYLVLATREGLVKKSRLEDFDSARAAGII 661

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQS-YKDG 695
            + +   +++     V   D + ++  + + + F      +  M R   GV      +D 
Sbjct: 662 AINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRPMGRATSGVIGMRFLEDD 721

Query: 696 GISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   +  +G T  + +    Y +        +  RGG G L  K     GK + +
Sbjct: 722 YLLSMDVIRPGDGSTDVLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEARGKLVGA 780



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLST 568
            E  P  V+ +  G ++  +    D +      A++ +EGD L  A      D +LL+S+
Sbjct: 629 YEAAPYLVLATREGLVKKSRLEDFDSARAAGIIAINLREGDELIAARLVFPDDDLLLISS 688

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFVYDSTCKLLVVSSKGNA 623
           D +A   PA +  S R  G A   +I +   +D     +      D +  +LV +  G A
Sbjct: 689 DAQAIRFPASD-ESLRPMGRATSGVIGMRFLEDDYLLSMDVIRPGDGSTDVLVTTENGYA 747

Query: 624 FIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQI 678
                 +     R GK  L    V +  K+   + +    D V  +     ++    D++
Sbjct: 748 KRTPSDQYPVQNRGGKGVLTAKVVEARGKLVGALMIDPEVDEVFAITSAGGVIRTGADEV 807

Query: 679 PEMSRGK-GVRLQSYKDG 695
               R   GVRL +   G
Sbjct: 808 KRSGRTTMGVRLMNLAKG 825


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/757 (34%), Positives = 425/757 (56%), Gaps = 29/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   ++   +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+ L +   +
Sbjct: 10  IHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKPY 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+YD++VRLAQ F  RYPL+ G GNFG+IDGDS AA RYT
Sbjct: 70  RKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRYT 129

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+MT++   +L+ + ++ VD+   ++E   EPVV PS+FPNLL NG++GIAVGMAT+IP
Sbjct: 130 EAKMTKMTGEMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATNIP 189

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +ALI+NP I I  L++Y+ GPDFPTGGII+  +  I  +Y  GRG  ++
Sbjct: 190 PHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGGIIM-GKTGIYNAYTTGRGRIKL 248

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +EE+ +    IVVTEIPY V K++++EKIA+L+  K++  + DIRDES  +   V
Sbjct: 249 RSKTHIEEISKKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIRV 308

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++  +++  ++  + ++  F +    L   + P+V+ L  IL  +L H+++++
Sbjct: 309 AIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVDNQ-PKVLNLKEILVHYLNHQKDII 367

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAI 431
            RR+ + ++    R  I++GLLIA  NIDEII IIR   +  +  ++ RF L+E Q  AI
Sbjct: 368 VRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIRASYNDAEEKLMERFDLSEVQAKAI 427

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RLR L+ LE  ++++E   LL   E ++S+L S +   + I  E+ E+K+ +     
Sbjct: 428 VDMRLRRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKY----- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R T  EV   D+    + +IE+E I V I++ G+++          K     ++AL
Sbjct: 483 -GDERRTAFEVD--DEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGVTAL 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +E D +K      T   I+  +  GK Y L    +   S    G AI  L+ L+  + 
Sbjct: 540 STRENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLALDPGEK 599

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        +     L++ +  G       +E  ++ + G   + ++ ++++  V    G
Sbjct: 600 ITAVIPIKEFKDDEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLTDG 659

Query: 659 DHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSA 715
           +   ++G +    + F+   +  + R  KGV+  S KD     +I   I  +    +   
Sbjct: 660 NQNIILGTHKGLAIKFNEADVRAIGRVSKGVKGISLKDDDY--LIGMDIATDNAYVLSVT 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +     L     R G G L  K   ++G    
Sbjct: 718 EKGYGKITKTNLYPTQGRAGKGVLNYKLTKKTGALSG 754



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 13/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +      A +     + +   V+ +  G  +       D S      A++  E D L   
Sbjct: 595 DPGEKITAVIPIKEFKDDEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L +  G A      ++ +     + ++  I L  +  ++   +      +
Sbjct: 655 SLTDGNQNIILGTHKGLAIKFNEADVRAIGRVSKGVKG-ISLKDDDYLIGMDIATDNAYV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-----VVKVTGDHVAVVGENRK 669
           L V+ KG   I + +      R GK  L     +K        V++   D + V+  +  
Sbjct: 714 LSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTKKTGALSGMCVIEKEKDDIMVISIDGT 773

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++      I +M R   GV++ +  +      I 
Sbjct: 774 VIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIA 807



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 11/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +  ++ +     ++ +++G         +R++   S  +  +  K+ D L     A
Sbjct: 648 DDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAIGRVSKGVKGISLKDDDYLIGMDIA 707

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLV 616
                +L ++  G           +    G+ +    +            +      ++V
Sbjct: 708 TDNAYVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTKKTGALSGMCVIEKEKDDIMV 767

Query: 617 VSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
           +S  G    ++ S I    R   G   + +  +  +  + KV
Sbjct: 768 ISIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKV 809


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/808 (32%), Positives = 409/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+  D+  
Sbjct: 2   TSFAKETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF+D Y+  + EP V PSK PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NP+ +I++L+E +  PDFPT GI +     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGI-IYGINGVRDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PKLCNLKDLIEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRSRADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++AE + +  +L   ++    I  E+  +K+ F +S      R +  E S 
Sbjct: 480 DKIVAEYKEVMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGA--RRSLVEHSA 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            D +T  + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 538 YDLST--EDLITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I  A         
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRN 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR  S   G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDEEDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A++  EGD L  A        ++L S 
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA      ++     +   ++ +  L+  Q ++   V +   + +L  +  G      
Sbjct: 716 GGKAVRFDEEDVRPLGRNARGVRGM-SLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 ITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGR 834

Query: 684 GK-GVRLQSYKDGG 696
              GV L    +G 
Sbjct: 835 ATQGVTLIGLDEGA 848


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/754 (37%), Positives = 444/754 (58%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  S+E+L E++ GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF 
Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E D L  E+E++ +LL S  +    +  E+ E 
Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   +A  +  ++  EP+TVVIS +GW R  K H +D   
Sbjct: 476 AETYGD-----DRRSPIVERAE-ARALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A  L S RG GE +   +        
Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714
            +A V    +LL+F +  +P++ +GKG ++       ++      V    +  G T +  
Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709

Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           AG R+ +    DL  + G+RG  G+ +P+GF R 
Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQRV 743


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 405/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  ++E F  +     RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIREQFGDA-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAEKDSVVSLIVPRGEGA-ILTVTQNGYGKRTAAEEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAEKDSVVSLIVPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+      +  V     D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGS 854


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332989205|gb|AEF08188.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 878

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 418/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + ++DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I++TE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++E++ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEIIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+     + K  ++ RF  T+ Q  AIL
Sbjct: 365 TRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQRFKFTDVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   V +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIIQDEHEDFEEEELIQE--QETVVTLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI ++ ++ I
Sbjct: 538 TREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQISKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   ++F+ + +  M R  +GV+  + ++G    V   K  +G   +      
Sbjct: 658 EVVLVSGNGYCVVFNENDVRVMGRLAQGVKGMTLEEGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  K   ++GK +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 749



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSL---- 533
           +R  +         G       ++S+ +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQISKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +      A+   + DSL         D ++L+S +G        ++       + ++
Sbjct: 628 FENTTKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVMGRLAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     +K  
Sbjct: 688 GM-TLEEGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +V +      D + +       +   + Q+P   R  +GV+L       I
Sbjct: 747 KIVDIKMVNDEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDI 797


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/828 (33%), Positives = 409/828 (49%), Gaps = 102/828 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N +++I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +NM  L   + P+VM L  IL  +L HRREV+ RR
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL +A  NID II +IR+   P                      
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL  L  LE  +I  E  +LL   
Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E +        RRT   E+S +      + +I  E
Sbjct: 486 AELLHILASPARLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y L    L        G  I  L+ L   + I        YD+   +   ++ G    
Sbjct: 598 KVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYDAEKYVFFATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI--------- 675
              S+       G   + +   +++  V    G + + +  +  K++ F+          
Sbjct: 658 TSLSDFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADV 717

Query: 676 -DQ----------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
            D                             +  M R   GVR      G     +    
Sbjct: 718 SDDVETDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPR 777

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EG   + +    Y +           RG  G +  K   R+GK + +
Sbjct: 778 GEGA-ILTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDA 824



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 48/243 (19%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L     + E      +  G ++              + A++ KEGD L   
Sbjct: 626 EEGERITAILPVKEYDAEKYVFFATANGTVKKTSLSDFSRPLSSGIRAINLKEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAG----------------------------NLLSGRGH 586
                ++ I+L S  GK      G                                 +G 
Sbjct: 686 DITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDVETDDDAGNDDDGSDNGEGTESKGT 745

Query: 587 GEAIQLL---------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
            + ++ +         I L     +V+  V      +L  +  G       +E    +R 
Sbjct: 746 FKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGEGAILTATENGYGKRTALAEYPTKSRG 805

Query: 637 -KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            +G   +KV     K+   ++V   D + ++     L+   + ++  + R   GVRL   
Sbjct: 806 TQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVAEVSVIGRNTGGVRLIRT 865

Query: 693 KDG 695
            + 
Sbjct: 866 GED 868


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 426/757 (56%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L++ ++ Y++S I  RA+PD+RDG KPVHRRII+ + E+G+     + KS
Sbjct: 9   KILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+ +GK HPHGD S+YD++VRLAQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 69  ARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D+D VDF+  Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN
Sbjct: 129 MAKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ E  +A IDNPEI I++L+ YI GPDFPTG   +   E I+ +YR G+G FR RA+
Sbjct: 189 LTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGA-SIMGTEGIISAYRTGKGSFRTRAK 247

Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VEE+ + G   I+VTEIPY V K+RL+EKIAEL+  KRI  + D+RDES      ++ 
Sbjct: 248 AHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVM 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +L+  ++  + ME  F +N+  L  G+ P+V+ L  I+  ++ H+++V+ R
Sbjct: 308 ELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +   +    IL+GL IA   IDE+I+IIR        K  ++SRF L++ Q  AI
Sbjct: 367 RTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL+ L  LE  +I+ +   +      + ++LNS +   N I  E++EVKE F     
Sbjct: 427 VDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E+S        + +I+ E + + +S+RG+I+          +     +  +
Sbjct: 485 ---RRT---EISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGM 538

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +E D ++      T   IL  +T GK Y L A  +      G G A+  L+ +N +++
Sbjct: 539 ATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEE 598

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +TA +    Y+    L + + KG        E  +  + G   + +S ++++  V    
Sbjct: 599 KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTK 658

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D H+ +  +N   + F    + +M R   GV+  S +   +   +     E    +   
Sbjct: 659 PDEHIIIATKNGLCIRFLESDVRQMGRTAHGVKGISLEKEDLVVSMDVIYEEEAEILSMT 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +++  +     +  RGG G +  K   ++GK + 
Sbjct: 719 ELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVG 755



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 67/200 (33%), Gaps = 13/200 (6%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + + +G ++       D      L A+     D L         + I++ + +G     
Sbjct: 616 FMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
              ++         ++  I L     +V+   +Y+   ++L ++  G +     SE    
Sbjct: 676 LESDVRQMGRTAHGVKG-ISLEKEDLVVSMDVIYEEEAEILSMTELGFSKRTSLSEYRVQ 734

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  +      K    + L V    + + ++ E+  ++   +  I +  R  +GV  
Sbjct: 735 GRGGKGIIATKLNAKTGKLVGLKVMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMA 794

Query: 690 QSYKDGGISDVICFKICEGL 709
               +  +  +      E  
Sbjct: 795 MRIGESKVVAIAVVDNKEDA 814


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++ +E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 715 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 774

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 775 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 690 QSYKDG 695
            S  +G
Sbjct: 835 ISLDEG 840


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 715 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 774

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 775 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 690 QSYKDG 695
            S  +G
Sbjct: 835 ISLDEG 840


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +  K     +  RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 594 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +  V+   +    +
Sbjct: 654 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDV--VVGLDVAHAES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 755



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 75/225 (33%), Gaps = 14/225 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + RG ++     +          A+ FKE D L     
Sbjct: 597 ETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
               + IL+ ++       P   L         ++  I L     +V   V   +S  ++
Sbjct: 657 TTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKG-ITLREGDVVVGLDVAHAESEDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G        E   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 716 LVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +   ++ I +  R   GVRL    +G     +     E     DS
Sbjct: 776 IRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADS 820


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/807 (31%), Positives = 413/807 (51%), Gaps = 84/807 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +  L L+ NP+ ++++L+E I  PDFPT GI +   + + E YR GRG   +RA+   
Sbjct: 190 IVDGCLHLLRNPQATVDELIELIPAPDFPTAGI-IYGIQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L   + P+++ L  +L+ +LAHRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQ-PRLLNLRQMLEYFLAHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  +L+GL +A  NIDE IAII+    P   K  ++S+              
Sbjct: 368 FELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE   +  +L   ++    I  E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 IMAEIADLLDILARPERITTIIIDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL------------TWIDSAGRSYNRSENDL 726
            M R  +GVR  + ++G    VI   +                + + +    Y +     
Sbjct: 720 PMGRQARGVRGMNLEEG--QAVIAMLVAPAETAEEAADAGVRGSVLTATENGYGKRTPIA 777

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 RG  G +  +   R+G+ +++
Sbjct: 778 EYTRHGRGTKGMIAIQTSERNGRVVAA 804



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     + E    + + RG ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQAVIAMLVAPAETAEEAA 754

Query: 614 -------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVA 662
                  +L  +  G       +E   + R  K  + + + E+   VV        D + 
Sbjct: 755 DAGVRGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIM 814

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           ++     L+   + +I EM R   GV L +  +G
Sbjct: 815 LITTGGVLIRTRVAEIREMGRATQGVTLINVDEG 848


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 403/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 35/224 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
              +  V    GD   ++     L+   + ++ ++ R  +GV L
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTL 848


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/765 (34%), Positives = 408/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++E+L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKEELEDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+ Y L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   +++ 
Sbjct: 593 PLAVGESVTTMIDLERIHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEG 708
            V   TG+   ++G      + FS   +  M R   GVR      G  +         E 
Sbjct: 653 SVSVTTGNQDILIGTKLGIAIRFSESDVRLMKRAAHGVRGIKLNTGDVVVGAGVLNADES 712

Query: 709 LTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +   +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 713 EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 18/236 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 593 PLAVGESVTTMIDLERIHEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           IL+ +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 649 DRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLMKRAAHGVRG-IKLNTGDVVVGAGVL 707

Query: 609 DST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
           ++     ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 708 NADESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICFKICEGLTWIDS 714
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G    V    +  G    D 
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEG--DKVASIAVIPGAEIEDE 820


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 401/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IA+I+    P   K  ++SR                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERISAIIVEELTSIKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 78/212 (36%), Gaps = 14/212 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGRVVAATLVDPEAQIMLITTTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG-GISDVICFKICEGLTWIDSAG 716
           GV L S  +G  +S +      EG + IDS G
Sbjct: 815 GVTLISLDEGTKLSGLQQVAEAEGESEIDSDG 846


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/829 (33%), Positives = 412/829 (49%), Gaps = 104/829 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N +++I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+T F +NM  L   + P+VM L  IL  +L HRREV+ RR
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL +A  NID +I +IR+   P                      
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E  +LL   
Sbjct: 426 KAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E +        RRT   E+S +      + +I  E
Sbjct: 486 AELLFILASPVRLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y L    L        G  I  L+ L+  + I        YD+   +   ++ G    
Sbjct: 598 KVYWLKVYQLPEASRGARGRPIINLLPLDEGERITAILPVKEYDADKYVFFATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI--------- 675
              S+       G   + +   +++  V    G + + +  +  K++ F+          
Sbjct: 658 TSLSDFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADA 717

Query: 676 -DQ----------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKI 705
            D+                            +  M R   GVR      G    V+   +
Sbjct: 718 TDEVDTDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKL--GAGDKVVSLIV 775

Query: 706 CEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G    + +    Y +           RG  G +  K   R+GK + +
Sbjct: 776 PRGDGAILTATENGYGKRTALDEYPTKSRGTQGVISIKVDERNGKVIDA 824



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 76/271 (28%), Gaps = 58/271 (21%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +      A L     + +      +  G ++              + A++ KEGD L   
Sbjct: 626 DEGERITAILPVKEYDADKYVFFATANGTVKKTSLSDFSRPLSSGIRAINLKEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--------------------- 593
                ++ I+L S  GK      G   SGR   +A   +                     
Sbjct: 686 DITDGSNEIMLFSDAGKVVRFAEG---SGRADADATDEVDTDDDAGNDDDGSDNGEGTES 742

Query: 594 -------------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                              I L     +V+  V      +L  +  G        E    
Sbjct: 743 KGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGDGAILTATENGYGKRTALDEYPTK 802

Query: 635 TR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
           +R  +G   +KV     K+   ++V   D + ++     L+   + ++  + R   GVRL
Sbjct: 803 SRGTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVSEVSVIGRNTGGVRL 862

Query: 690 QSYKDG----GISDVICFKICEGLTWIDSAG 716
               +     G+  V      E         
Sbjct: 863 IRTGEDETVVGLQRVAESDEDENEVLAVEGE 893


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/789 (31%), Positives = 393/789 (49%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L+ +D++ VDF   Y+  ++EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    LAL++NP +SIE L+ YI  PDFPT G+ +     + E Y+ GRG   +RAR   
Sbjct: 190 VIAGCLALLENPALSIEDLIAYIPAPDFPTAGL-IYGMTGVREGYQTGRGRVIMRARTHF 248

Query: 259 E--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E  E   G   ++V EIPYQV K  LIEKIAEL+  K+I  + DIRDES +    ++   
Sbjct: 249 EDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L+HRREV+ RR+
Sbjct: 309 KRGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLSHRREVITRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            + ++    R  IL+GL +A  N+DEII +I+    P                       
Sbjct: 368 VYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVVEEMLVR 427

Query: 423 -----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                  L++ Q  AIL LRL+ L  LE+ +I  E  +++A+  
Sbjct: 428 AASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKIL 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L   ++    I  E+  ++E F        RR+   E+         + +I  + 
Sbjct: 488 DLLDILAKPERITEIIVTELVAIREQFGDE-----RRS---EIILQTHELSLEDLITPQD 539

Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+I+        + +       A   K+ D +     A+T D IL  S  G+
Sbjct: 540 MVVTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGR 599

Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L       G     G+ I  L  L   + I        +     + + +  G     
Sbjct: 600 CYWLKVYEAPQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFADDKFIFMATRAGTVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG- 684
             S+     + G   + +  ++ +  V   TG   + +V    K + F  + +  M RG 
Sbjct: 660 PLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPMGRGA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR    + G     +     +  T + +    + +           RG  G       
Sbjct: 720 RGVRGMKLQAGQAVISLLVAESDQQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADS 779

Query: 745 PRSGKFLSS 753
            R+G  + +
Sbjct: 780 ERNGVVIGA 788



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 80/237 (33%), Gaps = 20/237 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++              + A+   + D L   
Sbjct: 627 EEGERINAVLPVKEFADDKFIFMATRAGTVKKTPLSDFSNPRKAGIIAVDLLDDDYLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
                   I+L+S  GKA      ++         ++ +  L   Q +++  V +S  + 
Sbjct: 687 ELTTGQSDIVLVSNAGKAVWFDEEDVRPMGRGARGVRGM-KLQAGQAVISLLVAESDQQT 745

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           +LV +  G       ++   + R  +G   +  S    + +  K+    D V ++     
Sbjct: 746 VLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERNGVVIGAKLVDDNDEVMLITTGGV 805

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRS 718
           L+   + +I  M R   GV L S  DG        +++ +     EG + + +    
Sbjct: 806 LIRTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVAPETG 862


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLMRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 715 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 774

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 775 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 690 QSYKDG 695
            S  +G
Sbjct: 835 ISLDEG 840


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/756 (34%), Positives = 418/756 (55%), Gaps = 30/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V +   +   YL YA+S I  RA+PD+RDG KPV RR ++AM ++GL   A ++KSA
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+   HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTEAR+
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++ + EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +EIC+  + LID+P+ +IE L + + GPDFPTGGII+  RE I+ +Y  G+G   VRA+ 
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIIL-GREGILSAYGTGKGKIIVRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE+      I+VTE+PYQV K+ LIEKIAEL+  +RIP + DIRDES  +   ++   
Sbjct: 245 HIEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIEL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P  ++  ++  + M+T F +N   L  G VP+++ L  +++ ++ HR+ V+ RR+
Sbjct: 305 RREAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            + +     R  +L+GL+IA  N+D +I  IRN    D  K  ++  F LTE Q  AIL+
Sbjct: 365 EYDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQDFGLTEVQAQAILD 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE  +I+ EL  + A+  + +S+L S ++    +  +++E+++ +       
Sbjct: 425 MQLRRLAALERQKIEDELKEVRAQIREYESILASPEKVLAIVKSDLQEIRDKYGDE---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545
            RRT   E S        + +I    + V +++RG+I+ L   +             +  
Sbjct: 481 -RRTKIVEASG---DIRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGV 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ--- 600
           K+ D ++  L  +T D +L  +  GK Y + A  +   S    G  +  LI+L  ++   
Sbjct: 537 KDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSKGLPLVNLINLEPHERVT 596

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
           +++    +     L  ++  G        E  +    G   + +   ++++ V  +   D
Sbjct: 597 EVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLGDND 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGR 717
            + V+    + + F    +    R   GV      +G   +V+  ++ + G   +    +
Sbjct: 657 DILVLTAKGQSIRFPASDVRPTGRQAIGVTAIRLSEG--DEVVAMEVVQSGAEILLVTKK 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +  +        R G G+   K   ++G   ++
Sbjct: 715 GFGKRTSIDEFNRQARAGSGARAIKIDEKTGDLATA 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 12/204 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        +     + +     I+  G I+              L A+  +EGD L+  
Sbjct: 590 EPHERVTEVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D IL+L+  G++   PA ++         +   I L+   ++V   V  S  ++
Sbjct: 650 RLLGDNDDILVLTAKGQSIRFPASDVRPTGRQAIGVTA-IRLSEGDEVVAMEVVQSGAEI 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF--LKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L+V+ KG        E     R G     +K+     +     +      V +   + ++
Sbjct: 709 LLVTKKGFGKRTSIDEFNRQARAGSGARAIKIDEKTGDLATARMAPEDSEVLIASASGQV 768

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK 693
           +    + I + S+  +GV L + K
Sbjct: 769 VRLKTNTISKQSKAARGVSLMTLK 792


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/790 (32%), Positives = 404/790 (51%), Gaps = 65/790 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+   +KKSARI
Sbjct: 10  PVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNISE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ +P+I I  L+  I  PDFPT GI +     I + Y+ GRG   +RAR   
Sbjct: 190 VIDACLLLLSDPDIDIAGLMACIPAPDFPTAGI-IYGISGIKDGYQTGRGRVIMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ +G    I++ E+PYQV K+ L+ +I EL+  KRI  + D+RDES +    V+    
Sbjct: 249 EELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDYFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419
           F ++    R  +L+GL +A  N+DEIIA+I+    P                        
Sbjct: 368 FELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVEEMLRRA 427

Query: 420 ---------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q  AIL+LRL+ L  LE+ +I SE   +L + 
Sbjct: 428 MIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYKEILDKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             + ++L + ++    I  E+  +K  F        RR+   EV    +    + +I   
Sbjct: 488 RDLLNMLANSERITAIIIEELTAIKGQFGDP-----RRS---EVVIDAQDLSTEDLITPT 539

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+I+S         K       A+  +E D +     A+T D IL  S+ G
Sbjct: 540 DMVVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLG 599

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +   N+   S    G  I  L+ L  ++ I        +D T  + + ++ G    
Sbjct: 600 RVYWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFDDTRYVFMATAGGTVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
              SE       G   + +   + +  V    G H V +  +  K + F  + +    R 
Sbjct: 660 TPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRN 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR            +     E +T + +    Y +  +        RG  G +    
Sbjct: 720 ARGVRGMKLGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINT 779

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 780 NKRNGKVVAA 789



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 13/210 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L     +      + +  G ++              + A+   EGD L
Sbjct: 625 VPLEQHEKINAVLPVKSFDDTRYVFMATAGGTVKKTPLSEFSRPRTNGIIAVALDEGDYL 684

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ++L S  GKA      ++     +   ++ +  L   Q +++  V DS 
Sbjct: 685 IGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNARGVRGM-KLGAEQKVISLLVADSE 743

Query: 612 C-KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVT-GDHVAVVGE 666
              +L  +  G       +E   + R  +G   +  +    K+     V   D + ++  
Sbjct: 744 NMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRNGKVVAAQLVEPNDEIMLITT 803

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              ++   + +I EM R   GV L +   G
Sbjct: 804 GGVMIRTRVSEIREMGRATQGVILINLDAG 833


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/808 (31%), Positives = 404/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ +P+ ++++++E I  PDFPT GI +     + E YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGI-IYGINGVKEGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------- 413
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P                
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQL 419

Query: 414 --------------------KPVMVSR---------FSLTENQVDAILNLRLRSLRKLEE 444
                               +P  + R         + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++A  E +  +L   ++    I  E+  +K  F +   LG RRT    V  
Sbjct: 480 DKIVAEYKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQH-KLGMRRTL---VEH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           + +    + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 SAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRT 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKGVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
               +    + ++ G ++              + A++  +GD L  A        ++L S
Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFS 714

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIV 626
             GK       ++         ++ ++ L   Q ++   V  D T  +L  +  G     
Sbjct: 715 DGGKGVRFDENDVRPLGRAARGVRGMM-LEDGQSVIAMLVAEDETQSVLTATENGYGKRT 773

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMS 682
              E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ 
Sbjct: 774 SIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELG 833

Query: 683 RGK-GVRLQSYKDGG 696
           R   GV L +  +G 
Sbjct: 834 RATQGVTLIALDEGA 848


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 403/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPDATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     +G     +     E  + + +    + +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L+  Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/794 (33%), Positives = 418/794 (52%), Gaps = 67/794 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 NQIGELIRILNSAVRLMEVIREELEVIRAEYGD-----VRRT---EILDARLDLTLGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK Y L    +   S    G  +  L+ L+ ++ I T      Y     + + ++KG 
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  V +  +  K+  F    +  M
Sbjct: 656 VKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM 715

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R Y +          KRGG G +
Sbjct: 716 GRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVI 773

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 774 AMVSNDRNGRLVGA 787



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +        L      +     + + +G ++        +  SV L AL   EGD L  A
Sbjct: 627 DSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRSVGLIALELDEGDVLISA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 687 AITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S ++    +  V  + G+ + ++ +   L
Sbjct: 746 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV 700
           +   + ++  + R  +GV L    KD  +  +
Sbjct: 806 VRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGL 837


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/792 (32%), Positives = 416/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+  D+   +KK
Sbjct: 6   KEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+E ++ P V P++ P LL NG++GIAVGMAT+IP H
Sbjct: 126 RMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALID PEI I++L+E+I GPDFPTG   +  R  IVE+Y+ GRG   +RA
Sbjct: 186 NLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGA-FINGRAGIVEAYKTGRGRIYMRA 244

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE++ +G    IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RHHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ +IF  + +++ F +NM  L  G  P+++ L  IL+ ++ HRREV+ 
Sbjct: 305 IELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDG-RPELLNLKQILECFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ F ++    R  IL+GL +A  NID +I +IR   +  + +  +++           
Sbjct: 364 RRTIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMAM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+ +Q  AIL+LRL  L  LE  ++ SE  +L+A
Sbjct: 424 LERAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLIA 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L +  +    I  E+  V++ F              E+  + +      +I+
Sbjct: 484 VIAELLEILGNPTRLMEVICEELEAVRDQFGDE--------RLTEILTSRQDLTIADLID 535

Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           + P+ V IS+ G+         ++ +      S+   K+ D +   L   + D ++L S 
Sbjct: 536 EAPMVVTISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNA 623
            GK Y L    +   S    G  I  L+ L   + I      +       + + ++ G  
Sbjct: 596 FGKVYWLRVFEIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDEMEDSYIFMATANGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   +++  V + +G+  + +V  + K + F    +  M 
Sbjct: 656 KKTAVEYFARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR     D     V      EG + + +    + +        +  RGG G +  
Sbjct: 716 RTAAGVRGIRLADEY-KVVSLIVPQEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGI 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 775 QVSERNGPVVGA 786



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 17/211 (8%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
              E             +E   I  + +  G ++        +  S  L AL   E D L
Sbjct: 624 PLAEGEHISALLPLNDEMEDSYI-FMATANGTVKKTAVEYFARPRSTGLIALSLDENDEL 682

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
                    + I+L+S+ GK       ++   R  G     +  I L     +V+  V  
Sbjct: 683 VGVAQTSGENDIMLVSSSGKTIRFKESDV---RAMGRTAAGVRGIRLADEYKVVSLIVPQ 739

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVG 665
             C +L     G        +     R G+  + +   E+   VV  T     D + ++ 
Sbjct: 740 EGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERNGPVVGATQVEDTDEIMLIS 799

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   L+     ++    R  +GV L    + 
Sbjct: 800 DQGTLVRTRASEVSCQGRNTQGVTLIRLMND 830


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/794 (33%), Positives = 410/794 (51%), Gaps = 67/794 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSA
Sbjct: 8   VSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF D Y+  +  P V P+K PNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 128 EKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LALIDNPEISIE+L+E+I GPDFPT    +  R  IVE+Y+ GRG   +RA+ 
Sbjct: 188 TEVINGTLALIDNPEISIEELMEFIPGPDFPTAA-SISGRSGIVEAYKTGRGRIHLRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V+EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + M+  F +NM  L     P++  L  +L  ++ HRREV+ RR
Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVAL-DKGQPKLFNLYQVLDAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------- 420
           S + ++    R  IL+GL I+  NIDE+I +IR    P                      
Sbjct: 366 SVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLE 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL  L  LE  +I  E   LL + 
Sbjct: 426 SAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E++  +L S ++    I  E+ E+++ F  +           E++ A      + +I +E
Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDARK--------TEITAAAHDISMEDLINEE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++          +      +A   K+ D ++    A+T D IL  ST G
Sbjct: 538 DVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L   S    G+ I  L+ L  ++ I        Y     +++ +  G    
Sbjct: 598 RIYWMKVYQLPLASRASRGKPIVNLLPLESDERITAILPTRDYPEDKFVIMATKHGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   L ++  +++  V    G+  + +  +  K++ F  DQ+  M R 
Sbjct: 658 TPLPEYSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSMGRT 717

Query: 684 GKGVRLQSYKDG-GISDVIC---FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             GVR    ++G  +  +I    ++  +    +      + +           R   G +
Sbjct: 718 ATGVRGIRLEEGQKVVSLIVPGTYEDEQQAAILTVTENGFGKRTLVEEYPTKSRATKGVV 777

Query: 740 VPKGFPRSGKFLSS 753
             K   R+G  + +
Sbjct: 778 SIKVSERNGAVVGA 791



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 19/219 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L      ++   ++ +  G ++              + AL+  EGD L   
Sbjct: 626 ESDERITAILPTRDYPEDKFVIMATKHGTVKKTPLPEYSRPRNGGIIALNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDST 611
                   I+L S  GK        + S       ++  I L   Q +V+  V   Y+  
Sbjct: 686 DITDGEQEIMLFSDGGKVVRFREDQVRSMGRTATGVRG-IRLEEGQKVVSLIVPGTYEDE 744

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVG 665
            +  +L V+  G        E    +R  K  + +   E+   VV     V G+ + ++ 
Sbjct: 745 QQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERNGAVVGAMEVVDGNEIMLIS 804

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
               L+   ++++  + R  +GVRL   + G    V+  
Sbjct: 805 NKGTLVRTRVNEVSMVGRNTQGVRLI--RTGDDEQVVGL 841


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/740 (51%), Positives = 518/740 (70%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S  +I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLG- 487

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VDLSALHFKEGDSLK 552
            R T  E     KA    AMIE+EP+TVV+S RGWIR LK H       A+ FKEGD   
Sbjct: 488 ARQTLIEEQTPAKAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/816 (32%), Positives = 414/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR+   P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   + +  ++ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKAEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L A++ ++ D+L   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDALIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 EITDGESDIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 392/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    +DN E   E     ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 QGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E    +     RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELAEIVEKHGDA-----RRTRIV---AADGDVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDY 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 712 L-LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 604 QPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDYLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     +    
Sbjct: 723 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            ++  +  Q+ +  R  KGVRL +  +G     I
Sbjct: 783 GVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLAI 816


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/740 (51%), Positives = 519/740 (70%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLG- 487

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VDLSALHFKEGDSLK 552
            R T  E     KA    AMIE+EP+TVV+S RGWIR LK H       A+ FKEGD   
Sbjct: 488 ARQTLIEEQTPAKAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/772 (29%), Positives = 395/772 (51%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A+KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I ++ L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGA-YIYGIQGVRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K++LIE IAEL+   +I  + ++ DES
Sbjct: 240 GRGRVVMRAKAEIE-SDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDLKRDSNANVILNKLFKMTALQSSFSVNCIALVKG-RPRLLGLKDCVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF 
Sbjct: 358 EHRHDVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPELCKKVMKDELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +  +     RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDA-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSDFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L+ +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDI--------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++++  +  +        +T   + ++  ++  +  G                G   + +
Sbjct: 590 MLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGVIAINL 649

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDV 700
           +  +++  V    G+  + +   N +   F  + I  M R   GVR       D  +  +
Sbjct: 650 AEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTMGRTATGVRGMKLDGDDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +  T +  + + Y +        +  RGG G        ++G+ ++
Sbjct: 710 VPVNNADVETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITEKTGRLVA 761



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 87/235 (37%), Gaps = 15/235 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           TL           +  +  G ++     +        + A++  EGD L      +  + 
Sbjct: 607 TLTDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGVIAINLAEGDELVDVRLTNGENE 666

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSK 620
           +++ + +G+A       + +       ++ +     +  +V     ++     ++VVS +
Sbjct: 667 LIIANRNGRACRFHENTIRTMGRTATGVRGMKLDGDDDAVVGMVPVNNADVETVMVVSEQ 726

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  E   ++  +  VT +  + ++ ++   +  S+ 
Sbjct: 727 GYGKRSQVEDYRITNRGGKGVKTLAITEKTGRLVAIKNVTDENDLMIINKSGIAIRLSVA 786

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            +  M R   GVRL +   K+  I+ V      E    ++   R+    +++ + 
Sbjct: 787 DVRVMGRATQGVRLINLSKKNDIIASVCKVMSSELEASVEEESRAQWAKKSEEIK 841


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/764 (34%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L L  NP+++I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVT+IPYQV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++  + ++T F +NM  L  G  P+++ L   L E+L H++
Sbjct: 302 VRVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKQALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++ +L   +     +  E+ ++KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T        D    L+  +  G       S      + GK  +    ++++  
Sbjct: 594 DNDETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKICE 707
           V    G+   ++   +  L+ F+   +  + R   GVR  S ++  +    DV      +
Sbjct: 654 VRLTDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRGISLREDDVVVGLDVAHADSED 713

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           G+  +   G  Y +        L  RGG G    K   R+G  +
Sbjct: 714 GVLVVTENG--YGKRTPVSEYRLSNRGGKGIKTAKITERNGNIV 755



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 18/233 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + + +++   V  +  G ++     +          A+ FKE D L     
Sbjct: 597 ETISTMIAVRNLEDEDSYLVFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
                 IL+ ++          +L         ++  I L  +  +V   V   DS   +
Sbjct: 657 TDGNQDILIGTSHASLIRFAETSLRPLGRTAAGVRG-ISLREDDVVVGLDVAHADSEDGV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       SE   + R GK        E+   +V +T     + + +V  +  +
Sbjct: 716 LVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNIVCITTVNGEEDLMIVTNSGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
           +   ++ I +  R   GVRL    D      ++ VI     E  T        
Sbjct: 776 IRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQTENG 828


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 417/757 (55%), Gaps = 32/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE  +G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                     +   ++    + +++ E + V +++ G+I+          K     +  +
Sbjct: 483 --------TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI ++  + 
Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +         D    +L+ + KG        E  +  R G   + +   +++  V    G
Sbjct: 595 VTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNG 654

Query: 659 DHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSA 715
           +   ++G      + F+   +  M R  +GV   S ++    +V+   +       +   
Sbjct: 655 EREVIIGTAKGYAIRFNEKDVRPMGRVARGVMAISLRED--DEVVEMDLVHPDGEVLTVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +     +  R G G +  K   ++GK +S
Sbjct: 713 EKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 12/210 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
                     A +     +     ++ + +G I+              + A+   E D L
Sbjct: 587 IQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDEL 646

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 +    +++ +  G A      ++         +   I L  + ++V   +    
Sbjct: 647 INVKLTNGEREVIIGTAKGYAIRFNEKDVRPMGRVARGVMA-ISLREDDEVVEMDLVHPD 705

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVT-GDHVAVVGEN 667
            ++L V+ KG     +  E     R GK  + +       K+  +  V   D   ++  N
Sbjct: 706 GEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSIRCVQPEDEFMIISAN 765

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             L+   +  I +M R  +GV L   +DG 
Sbjct: 766 GILIRMKVKDISKMHRDTQGVTLMKLEDGD 795



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFKSI-----KRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTL 575
                       +R +   +  + A+  +E D +      H    +L ++  G  K   L
Sbjct: 675 ------------VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDL 722

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               +      G+ I  +        +V+        + +++S+ G    ++  +I    
Sbjct: 723 EEYRIQGR--AGKGIIAMKLSKKTGKLVSIRCVQPEDEFMIISANGILIRMKVKDISKMH 780

Query: 636 R--KGKTFLKVSSEEKMKLVVKVTGDH 660
           R  +G T +K+   +++    ++  + 
Sbjct: 781 RDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/766 (31%), Positives = 397/766 (51%), Gaps = 38/766 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++E Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E   A + +IDN      E ++E+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L        P+V+ L  +L+ +L 
Sbjct: 306 MRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLEYYLE 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H+  V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELIDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L   K     I  EI  + 
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKFQAILADRKLLLRVIREEILAIA 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +      G  R T       D     + +I +E   + ++  G+I+            
Sbjct: 486 EKY------GDDRKTSIGYDVYD--ISTEDLIPRENTVIAMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
               +  +   E D ++  L   T   ++  +  G+ Y L    +        G AI  L
Sbjct: 538 GGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   + I        Y+    L++ + KG        +     + G T + +  ++++
Sbjct: 598 LQLAPGEKITAVIPLRKYEEGHYLMMATKKGLVKKTPIKDYENVRKTGLTAIVLRDDDEL 657

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CE 707
             V     +  + +V  + + + F    +    R   GVR  +  DG   +V+  ++  +
Sbjct: 658 IEVKATDNNKDIILVTRDGQCIRFKETDVRSTGRASMGVRGMNLTDG--DEVVAMQLNTQ 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +     +        +  RGG G    K   ++G  + +
Sbjct: 716 GDYLLVVSENGMGKRTAMSEFVVQNRGGKGVKCYKITEKTGNVVGA 761



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 18/262 (6%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++         R T               A +     E+    ++ + +G ++      
Sbjct: 578 KVYEIPEAGRTARGTAIINLLQLAPGEKITAVIPLRKYEEGHYLMMATKKGLVKKTPIKD 637

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  ++ D L           I+L++ DG+       ++ S       ++
Sbjct: 638 YENVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVRSTGRASMGVR 697

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + +L    ++V   +      LLVVS  G       SE +   R GK        EK  
Sbjct: 698 GM-NLTDGDEVVAMQLNTQGDYLLVVSENGMGKRTAMSEFVVQNRGGKGVKCYKITEKTG 756

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            VV        + + ++     ++      I  + R   GV++ +  +G     I     
Sbjct: 757 NVVGAKAVNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVTVASIAKVRD 816

Query: 707 EGLTWIDSAGRSYNRSENDLLG 728
           +      +  ++   + ++  G
Sbjct: 817 KDPEADTTTEKADGETGDNEEG 838


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 392/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    +DN E   E     ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 QGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E    +     RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELAEIVEKHGDA-----RRTRIV---AADGDVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDY 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 712 L-LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 604 QPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDYLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     +    
Sbjct: 723 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            ++  +  Q+ +  R  KGVRL +  +G     I
Sbjct: 783 GVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLAI 816


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/772 (30%), Positives = 388/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++ E I+  +D+D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN++E+ +   A IDNP+I +E+L++YI  PDFPTGG  +   + + ++Y  
Sbjct: 181 GMATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGG-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA L+   ++  + +  DES
Sbjct: 240 GRGRIILRAKAEIE-SDESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVNG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P     +   RF 
Sbjct: 358 EHRHDVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKRFD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E D L      ++++L+  +     +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPELCKKVMKDELNEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT        +     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGD-----DRRTKII---PDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              V       +  D  +    A     +L  +  G+ Y L   N+  G     G AIQ 
Sbjct: 530 RGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  I             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--DV 700
           +  +++  V    G+  + +   N + + F    I  M R   GVR     DG  +   +
Sbjct: 650 AEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVMGRTATGVRGMRLDDGDDAVIGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I        T +  +   Y +  +        RGG G        ++G+ ++
Sbjct: 710 IVVDDPINETVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVA 761



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 76/206 (36%), Gaps = 15/206 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++  EGD +      +  + +
Sbjct: 608 LDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGVIAINIAEGDEVVDVRLTNGENEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKG 621
           ++ + +G+A       +         ++ +   + +  ++   V D      ++VVS  G
Sbjct: 668 IMANRNGRAVRFDERTIRVMGRTATGVRGMRLDDGDDAVIGMIVVDDPINETVMVVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  +   ++  +  VT D  + ++ ++   +  S+ +
Sbjct: 728 YGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGITIRLSVAE 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDV 700
              M R   GVRL +   K+  I+ V
Sbjct: 788 CRVMGRATQGVRLINLSKKNDIIASV 813


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/764 (33%), Positives = 416/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 ENDESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE--- 707
           V    G+   ++G  +  L+ FS   +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREG--DEVVGLDVAHANS 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIV 755



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL----- 551
                    + +  ++   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 552 ----KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
               +  L       ++  S         A   L     G      I L    ++V   V
Sbjct: 657 TDGEEDILIGTAHASLIRFSE-------KALRPLGRTAAGVKG---ITLREGDEVVGLDV 706

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHV 661
              +S  ++LVV+  G       ++   + R GK     +  E+   +V +T     + +
Sbjct: 707 AHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDL 766

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            VV     ++   +  I +  R  +GVRL    D      + 
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVA 808



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 11/177 (6%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGD 549
                    D+    +    +E I +  ++   IR        L   +  +  +  +EGD
Sbjct: 640 KIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREGD 699

Query: 550 SL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +      HA++ D +L+++ +G     P  +       G+ I+       N +IV    
Sbjct: 700 EVVGLDVAHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITT 759

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
                 L+VV++ G    ++  +I  N R   G   +++  ++ +  V KV  +  A
Sbjct: 760 VTGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDA 816


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/797 (31%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L+  Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/757 (33%), Positives = 422/757 (55%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G+      KKS
Sbjct: 7   NIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VRLAQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +++ +++D VD+R  ++E   EP V PSKFPNLL NG++GIAVGMAT+IP HN
Sbjct: 127 LSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDN E  +E L+E+I GPDFPT   I+   E I E+Y  GRG  +VRA+
Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIM-GTEGIKEAYTTGRGRIKVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +G   I++TEIPYQV K+RLIEKIAEL+  K++  + D+RDES  +   ++  
Sbjct: 246 ASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + +E  F + M  +  G  P+V+ L  +L  +L H+++++ RR
Sbjct: 306 LKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGE-PKVLNLKEVLTHYLDHQKDIITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  N+DE+I +IR  +     K  ++  F+L+E Q  AIL
Sbjct: 365 TQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E ++L+        +L + +   N I  E+ E+KE +      
Sbjct: 425 DMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E++RA      + MI +E + + +++ G+I+          K     ++AL 
Sbjct: 482 --RRT---EITRAIGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAALT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  + + + D +L  +  G+ Y L    +   R    G AI  LI L+ N+ +
Sbjct: 537 TREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNETV 596

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      +  L++ +  G     + S+  +  + G   + +  ++++  V     D
Sbjct: 597 AATIPVGRQFDSKYLVLATKNGIIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDED 656

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAG 716
             + ++      + F    + +M R   GV+  +        V+  +I  E    +  + 
Sbjct: 657 SEIILITAQGMSIRFKEQDVRDMGRSAMGVKGINL--SPKDHVVSMEIVEENKDLLVISE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + + +  +     L  RGG G        ++G  + +
Sbjct: 715 KGFGKRTDTSEYRLQTRGGKGIKTYNVTGKTGPLVGA 751



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 73/187 (39%), Gaps = 16/187 (8%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ +  G I+  +    + +      A+  +E D L           I+L++  G +   
Sbjct: 612 VLATKNGIIKKTQLSQFESTRKSGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRF 671

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
              ++   R  G +   +  I+L+    +V+  + +    LLV+S KG     + SE   
Sbjct: 672 KEQDV---RDMGRSAMGVKGINLSPKDHVVSMEIVEENKDLLVISEKGFGKRTDTSEYRL 728

Query: 634 NTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
            TR GK      +   +   +   +    D V ++     ++  ++  I ++ R  KGV 
Sbjct: 729 QTRGGKGIKTYNVTGKTGPLVGAKIVTDEDEVLLINNYGTVIRLNVSNISKLGRNTKGVT 788

Query: 689 LQSYKDG 695
           L   ++ 
Sbjct: 789 LMRMEED 795


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/730 (53%), Positives = 524/730 (71%), Gaps = 3/730 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S   AL  RYLAYALSTI +RA+PD RDG KPVHRR+++AM  + L    AFKK 
Sbjct: 11  RIFDESFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLKLSPDTAFKKC 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIG+ HPHGDQ+VY++LVRLAQ F  RYPL+ GQGNFGN+DGD AAA RYTEAR
Sbjct: 71  ARVVGDVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDGAAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ A LILQ  DE  VDFR+TY+ ED EP+V P+ FPNLLANG++GIAVGMAT+IP HN
Sbjct: 131 LTEAAILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+AA  LI  P  + E LL Y+ GPDFPTGG+ VE+RE+I+E+Y  GRGGFR+RAR
Sbjct: 191 AAELCDAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYETGRGGFRLRAR 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VEE+GRG W IVVTEIPY VQK++LIE+IA L+  K++PLL D+ DESAEDVR++L P
Sbjct: 251 WEVEELGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDESAEDVRLILEP 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R++DP LLMES+F L+D+E RF LN+NVL     P+V+ L   L+ WL HRR V+ RR
Sbjct: 311 KSRTIDPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWLDHRRVVVVRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           ++ R++ ++ R+E+L G ++AYLN+DE+I IIR ED PK  ++  FSLT+ Q +AILN+R
Sbjct: 371 ATTRLEHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKDELIKTFSLTDRQAEAILNMR 430

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLRKLEE +I+ E   L  E++++++L+     QW ++  E+ +VK+ F  +T+LG+R
Sbjct: 431 LRSLRKLEEMEIRDEQSRLEGERDELNALIADESLQWKKVDSEVADVKKRFGPNTELGKR 490

Query: 496 RTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RTTF    +      +++A+I +EPIT+V+S  GW+R+LK H+ D++ +  K+GD    +
Sbjct: 491 RTTFADAPAADLADMVEEALIPREPITIVLSRMGWVRALKGHTDDVTGIKHKDGDETAFS 550

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L A TTD+IL+L+TDG+ YTL A  L  GRG GE ++LLID++ + + V  F Y    KL
Sbjct: 551 LKAETTDKILMLTTDGRVYTLDASKLPGGRGFGEPVRLLIDMDESAEPVALFKYSPDRKL 610

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           L+ S+ G+ F+V E E+ A  R G+  L V    K  + + +TGD +AV+GEN+KLL+F+
Sbjct: 611 LLASTSGHGFVVAEKELPAIKRAGRQVLNVIDGHKAMMALPMTGDRIAVLGENKKLLVFA 670

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
            D+IPEM RGKGVRL   K G ++D+  F   EGL  +D AGR +     D   + GKR 
Sbjct: 671 ADEIPEMVRGKGVRLLGGKAGEVADITVFNAEEGLVRVDPAGRRHLV--EDWRYYEGKRA 728

Query: 735 GVGSLVPKGF 744
             G L P+GF
Sbjct: 729 QAGKLAPRGF 738


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/815 (33%), Positives = 412/815 (50%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+E+I GPDFPT  I V  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAI-VNGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    +++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 KGMLEKAGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L+S ++    I  E+ EV E F      G +R T    +  D +   + 
Sbjct: 480 LLEVIAALLLILSSPQRLMEVITEELHEVLENF------GDKRRTVINANEVDMSL--ED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSEGERITAILPVREYADDKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARN 711

Query: 676 -------------DQI---PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                        +++     M R   GVR    +DG    V      E    +      
Sbjct: 712 AETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTV-VSLIVPKEDGAILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           RG  G +  K   R+G  + +
Sbjct: 771 YGKRTALSEYPAKSRGTKGVVSIKVSERNGAVVGA 805



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 32/246 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYADDKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAG-----------------NLLSGRGHGEAIQLL--IDLNH 598
              D I+L S +GK                         +++ R  G     +  I L  
Sbjct: 688 DGNDDIMLFSNEGKVVRFNEKARNAETGEVKIDPETGEEVIALRAMGRTATGVRGIKLED 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVV 654
            Q +V+  V      +L V+  G       SE  A +R  KG   +KVS      +  V 
Sbjct: 748 GQTVVSLIVPKEDGAILTVTENGYGKRTALSEYPAKSRGTKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICF-KICEGLTW 711
               D + ++ +   L+      +  + R  +GV +    +D  +  +    +I +    
Sbjct: 808 VGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAEDEKVVGLQRIDEIQDEEVE 867

Query: 712 IDSAGR 717
           +D  G 
Sbjct: 868 LDEEGN 873


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/797 (31%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     DG     +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L+  Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV      T D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/803 (33%), Positives = 403/803 (50%), Gaps = 77/803 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAI-INGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 EVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDILSAFVCHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID +I +IR    P                      
Sbjct: 366 TIFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 QAGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +KE ++ +     RRT   E S        + +I +E
Sbjct: 486 AELLFILENPERLMEVIREELLAIKEQYNDA-----RRTELTENSA---DINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 KMYWMKVYQLPEASRGARGRPIVNLLPLGQNERITAILPVREYEDGLNIFMATASGIVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF----------- 673
            + SE       G   + ++  +++  V    G + V +     K++ F           
Sbjct: 658 TKLSEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDG 717

Query: 674 --SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
              +  +  M R   GVR      G     +     EG   +      Y +   +     
Sbjct: 718 TVRVKGVRAMGRTATGVRGIKLSAGDKVVSLIIPRGEG-EILTVTENGYGKRTAESEYPT 776

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 777 KSRATQGVISIKVSERNGNVIGA 799



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 23/216 (10%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALH 556
           +    A L     E      + +  G ++  K        S  + A++  EGD L     
Sbjct: 628 NERITAILPVREYEDGLNIFMATASGIVKKTKLSEFSRPRSAGIIAVNLNEGDELIGVDL 687

Query: 557 AHTTDRILLLSTDGKAYTLPAG----------NLLSGRGHGEAIQLL--IDLNHNQDIVT 604
              ++ ++L S  GK                  +   R  G     +  I L+    +V+
Sbjct: 688 TDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKGVRAMGRTATGVRGIKLSAGDKVVS 747

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVT-GDH 660
             +     ++L V+  G      ESE    +R   G   +KVS     +   ++V   D 
Sbjct: 748 LIIPRGEGEILTVTENGYGKRTAESEYPTKSRATQGVISIKVSERNGNVIGAIQVEPTDQ 807

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           + ++ +   L+   + ++  + R  +GV L    + 
Sbjct: 808 IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAED 843


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/766 (34%), Positives = 428/766 (55%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S++NT  EE  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ +
Sbjct: 1   MSDNNTNNEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDGD
Sbjct: 61  GLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPN+L NG+ GIA
Sbjct: 121 PAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +A IDNP I+ E L++YI GPDFPTGG+IV  ++ I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIV-GKDGIRETYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VRA+  +EE   G   IV+TE+PY V KS+L+EKIAEL+  K I  + D+RDE
Sbjct: 240 TGRGKIIVRAKAEIEE-HNGRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R ++P +++  ++M + M+  F   M  L  G  P+++ L+ I++++
Sbjct: 299 SDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGA-PKILSLNQIIEKY 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+       K  ++ +F
Sbjct: 358 VDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AI+++RL  L  LE  +++ EL+ L  + E++  +L   K+    I  E++E
Sbjct: 418 GLSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGILADEKKVLEIIKKELKE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +K+ FS        R T       +     + +++ E   V +++ G+I+          
Sbjct: 478 IKDKFS------SERKTHIVAKVDEMDI--EDLVQLEDAVVTMTHFGYIKRMPLDAYKSQ 529

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           K     +S +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI 
Sbjct: 530 KRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIV 589

Query: 592 LLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            LI ++ ++ +        +     +++ + KG     E  +     + G T +K+   +
Sbjct: 590 NLIQIDQDEKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDDGD 649

Query: 649 KMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V+   GD   ++G  N   + F  + +  M R  +GV   S +D     V    I 
Sbjct: 650 ELINVMLTNGDREIIIGTANGYCIRFHENNLRPMGRQARGVIAISLRDDDYV-VEMDLIN 708

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E    +      Y +  +        R G G +  K   ++GK +S
Sbjct: 709 EDNEILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQKTGKLVS 754



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +      A +      K    V+ + +G I+  +            +A+   +GD L
Sbjct: 592 IQIDQDEKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDDGDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              +  +    I++ + +G        NL         + + I L  +  +V   + +  
Sbjct: 652 INVMLTNGDREIIIGTANGYCIRFHENNLRPMGRQARGV-IAISLRDDDYVVEMDLINED 710

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGEN 667
            ++LVV+  G     +  E  + TR GK  +         K+  ++ V+  D + ++  N
Sbjct: 711 NEILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQKTGKLVSIMSVSEKDELMIISAN 770

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             L+   I  I +M R   GV L    DG 
Sbjct: 771 GILIRTRIADISKMHRDASGVTLMKLDDGD 800



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 11/189 (5%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            K        + +   T  ++   D+            I +  +  G+        +R +
Sbjct: 625 KKTEIDDFPKIKKSGNTAIKLDDGDELINVMLTNGDREIIIG-TANGYCIRFHENNLRPM 683

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  + A+  ++ D +      +  + IL+++ +G           S    G+ I   
Sbjct: 684 GRQARGVIAISLRDDDYVVEMDLINEDNEILVVTENGYGKRSDVKEYRSQTRAGKGIIAT 743

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
                   +V+        +L+++S+ G       ++I    R   G T +K+   +++ 
Sbjct: 744 KITQKTGKLVSIMSVSEKDELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVV 803

Query: 652 LVVKVTGDH 660
              K+  D 
Sbjct: 804 STAKIDNDD 812


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/820 (31%), Positives = 403/820 (49%), Gaps = 88/820 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI +P +SIE+L++YI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALAEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ E+   +  +     RRT     +  +     + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDA-----RRTVI---NANEIDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +                  A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L   + I        Y     +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSN 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ-- 677
           G       +        G   + +   +++  V    GD  + +     K++ F   +  
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEV 711

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
                                  +  M RG  GVR    ++G     +     +G   + 
Sbjct: 712 AVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGA-ILT 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                Y +           R   G +  K   R+G  + +
Sbjct: 771 VTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGA 810



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 35/223 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQLL-- 593
           +  D I+L S +GK      G                           R  G     +  
Sbjct: 688 NGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRG 747

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q +V+  V      +L V+  G     E SE  + +R  K  + +     +   
Sbjct: 748 IKLEEGQRVVSLIVPKDDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAV 807

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +  V     D + ++ +   L+    + +  + R  +GV +  
Sbjct: 808 VGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQGVTIIR 850


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/791 (34%), Positives = 404/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   I  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 626 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 403/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I++  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIEDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++M L  IL+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSSERLMEVIREELELMRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TGLQEFSRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR            +     EG   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIKLAQNDRVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYTEGFNIFMATASGTVKKTGLQEFSRPRSAGIIAINLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D  +L S  GK        +   R  G     +  I L  N  +V+  V     
Sbjct: 686 ALTNGNDEAMLFSAAGKVVRFAESAV---RAMGRTASGVRGIKLAQNDRVVSLIVPREEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            +L V+  G       SE    +R   G   +KV+      +  V  V  D + ++ +  
Sbjct: 743 AILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGS 854


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/759 (36%), Positives = 446/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E+I GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED+PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPVLMEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL S  +    +  EI E 
Sbjct: 416 LTEVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLGSEAKLKKLVRKEIIED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AEKY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+     VT    D
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLEDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGASL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+     +DL  + G+RG  G+ +P+GF R  + L
Sbjct: 709 QAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/764 (33%), Positives = 416/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LLA  ++++++L   +     +  E+ E+KE +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGLD-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  I   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 ENDESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE--- 707
           V    G+   ++G  +  L+ FS   +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREG--DEVVGLDVAHANS 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIV 755



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 32/222 (14%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL----- 551
                    + +  ++   V  + +G ++     +          A++FKE D L     
Sbjct: 597 ESISTMIAVKDLESEDDYLVFATRKGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRL 656

Query: 552 ----KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
               +  L       ++  S         A   L     G      I L    ++V   V
Sbjct: 657 TDGEEDILIGTAHASLIRFSE-------KALRPLGRTAAGVKG---ITLREGDEVVGLDV 706

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHV 661
              +S  ++LVV+  G       ++   + R GK     +  E+   +V +T     + +
Sbjct: 707 AHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDL 766

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            VV     ++   +  I +  R  +GVRL    D      + 
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVA 808



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 11/177 (6%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGD 549
                    D+    +    +E I +  ++   IR        L   +  +  +  +EGD
Sbjct: 640 KIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPLGRTAAGVKGITLREGD 699

Query: 550 SL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +      HA++ D +L+++ +G     P  +       G+ I+       N +IV    
Sbjct: 700 EVVGLDVAHANSEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERNGNIVCITT 759

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
                 L+VV++ G    ++  +I  N R   G   +++  ++ +  V KV  +  A
Sbjct: 760 VTGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDA 816


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 414/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V ++  +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    +++
Sbjct: 8   EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGLSPEKSYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 68  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++   +L+ ++++ VDF   ++  + EP V PS+FPNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +    LI++P+ +I +L+  I GPDFPT GII+  +  I  +Y  GRG   +R
Sbjct: 188 HNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIM-GKSGIRSAYETGRGKVIMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE  +G + I+VTE+PYQV K++LIE +AEL+  KRI  + DIRDES  +   ++
Sbjct: 247 AKAEIEEE-KGRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDREGMRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P++++  ++  + M+  F + M  L     P+V+ L  IL  ++  ++E++ 
Sbjct: 306 VEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNE-PKVLNLKEILVNYIEFQKEIIR 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  +IDE+I++IR   N D+ +  ++++FSLTE Q  A
Sbjct: 365 RRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTKFSLTEKQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E + L+   + +  +LN+       I  E+ E+K  +    
Sbjct: 425 ILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELHEIKNKYGDER 484

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     E+         + +IE+E + V ++N G+I+          K     + A
Sbjct: 485 K--------TEIELNINEISIEDLIEEEEVVVTLTNSGYIKRISSDAYSSQKRGGKGIQA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D ++      T   +L  +  GK Y L A  +        G  I  L+ ++ N+
Sbjct: 537 MTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNIVNLLPVDANE 596

Query: 601 DIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +              L++ + +G       ++     + G   + +  E+++  V    
Sbjct: 597 HVREVIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDEDELLKVKVTR 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD  + +V +N   + FS   +  M R   GV+  S +   ++ V    + E    +   
Sbjct: 657 GDAEIIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVA-VSMDIVVEDEYVLTVT 715

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +        L  R G G +  +   ++GK +S+
Sbjct: 716 ENGFGKRTLASEYTLQNRNGKGLITHRVTDKTGKIVSA 753



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/440 (13%), Positives = 151/440 (34%), Gaps = 29/440 (6%)

Query: 285 KIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME---TRFP 340
           +IA   I + I L+   ++ + A +  +  F         +L   +  L+ +E       
Sbjct: 385 RIALDHIDEVISLIRSSKNADEARNGLMTKFSLTEKQAQAILDMRLQRLTGLERDKIEEE 444

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            N  + ++  +  ++  + ++ + +        +      +  +  + I +  +   +  
Sbjct: 445 YNQLMETIKYLRDILNNEDLVLKIIK-EELHEIKNKYGDERKTEIELNINEISIEDLIEE 503

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           +E++  + N    K +    +S  +     I  +  +    +E   I S   +LL     
Sbjct: 504 EEVVVTLTNSGYIKRISSDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFF--- 560

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
                 +  + +   A EI E     +K T++             +   L++ +  +E  
Sbjct: 561 -----TNIGKVYKLKAYEIPEAGRT-AKGTNIVNLLPVDANEHVREVIALKKDL--EEGY 612

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++ + +G I+    +         + A++ K+ D L           I++++ +G A  
Sbjct: 613 LIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIR 672

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++     +   ++  I L  +   V+  +      +L V+  G       SE    
Sbjct: 673 FSEKDVRPMGRNSTGVKA-ISLRKDDVAVSMDIVVEDEYVLTVTENGFGKRTLASEYTLQ 731

Query: 635 TRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R GK  +     +K   +V        D + ++  +   +   +  +   +R   GV L
Sbjct: 732 NRNGKGLITHRVTDKTGKIVSARVAKDSDELMLINSSNTAIRICVSDVSITNRSAMGVTL 791

Query: 690 QS-YKDGGISDVICFKICEG 708
              Y++  I  +      E 
Sbjct: 792 MRTYEEEKILAIAKISSDED 811


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/767 (32%), Positives = 403/767 (52%), Gaps = 41/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +     +D+PE + E+LLE     I GPDFPT G+IV  R  I ++YR GRG  
Sbjct: 191 NLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIV-GRNGIEDAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE SA   
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F +NM  +  G VP+ + LD ++  ++ H+ 
Sbjct: 309 QRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMISYYVEHQV 367

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +V+ RR+ ++++    R+ +L GLLIA  ++DE+IA+IRN +  +      ++RFSL+E 
Sbjct: 368 DVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMARFSLSEI 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  E   L A+ ++++++L S  +Q   I  E+ EV E F
Sbjct: 428 QATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAILASPVRQREIIGQELAEVVEKF 487

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        +     + +I +E + V ++  G+         RS K    
Sbjct: 488 GDE-----RRTRLV---PFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGK 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     +E D ++      T   +L  +  G+ Y   A  L        G+ +  ++  
Sbjct: 540 GVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAF 599

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ I        Y +   L++ + +G       ++  +N   G   + +  ++++   
Sbjct: 600 SQDERIAEVMAIQDYQAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISA 659

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI---SDVICFKIC 706
             V  GD + +V  N + + F  D   +  M R   GV    + +       DV+  +  
Sbjct: 660 RLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDEADELLSMDVVVPESP 719

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             L    S G  Y +        +  RGG G L  K     G  + +
Sbjct: 720 ADLLVATSGG--YAKRTPLAEYPIQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ + RG  +       D +      A++ ++ D L  A      D +LL+S + ++
Sbjct: 618 PYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLLVSRNAQS 677

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQD----IVTAFVYDSTCKLLVVSSKGNAFIVEE 628
               A +    R  G A   +I +  ++      +   V +S   LLV +S G A     
Sbjct: 678 IRFHADD-EQLRPMGRATSGVIGMRFDEADELLSMDVVVPESPADLLVATSGGYAKRTPL 736

Query: 629 SEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +E     R GK  L    VS+   +   + V   D +  +  N  +L      +    R 
Sbjct: 737 AEYPIQGRGGKGVLTAKIVSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDVRRAQRQ 796

Query: 685 K-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             GVRL   + G    V    +       DS G  
Sbjct: 797 TMGVRLIDLEAG----VQVVGVARNADANDSDGDG 827


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/773 (31%), Positives = 399/773 (51%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPV RRI+++M + G
Sbjct: 1   MTETLPPEHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D 
Sbjct: 61  FRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+R+  +A  +L  ++ED VDFRD Y+    EP V PS+FPNLL NG SGIAV
Sbjct: 121 AAAMRYTESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E  +  ++NPE + ++LL      I GPDFPT  +I+     I +
Sbjct: 181 GMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMIL-GTSGIED 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   +I  + DI
Sbjct: 240 AYRTGRGSIRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADI 299

Query: 302 RDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DES +     ++    R     +++ ++F  + ++  F +NM  L    VP+ + LD I
Sbjct: 300 ADESNSRSGMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDD-VPRTLRLDQI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           ++ ++ H+ +V+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR     D+ +P +
Sbjct: 359 IRHYVKHQVDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S   + E Q  AIL+++LR L  LE  +I   L  +  E   +  +L   ++Q + I  
Sbjct: 419 MSLLEIDEIQATAILDMQLRRLAALERQRIIDTLAEIELEIADLKDILEKPERQRSIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ + +        RRT        D     + +I +E + V I+  G+        
Sbjct: 479 ELMEIVDKYGD-----DRRTQII---PFDGDVSVEDLIAQEDVVVTITRTGYAKRTKTDL 530

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            RS K     +     K+ D ++      T D IL  +  G+ Y   A +L        G
Sbjct: 531 YRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDLPEANRNARG 590

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y+    L++ + +G     + ++  +N   G   + +
Sbjct: 591 QHVANLLAFQPDEQIAQVIEIPNYEVAPYLVLATKRGLVKKTKLTDFDSNRAGGLIAINL 650

Query: 645 SSEEKMKL-VVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDV 700
              +++   V+    D + +V    + + F      +  M R   GV    + DG     
Sbjct: 651 REGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEALRPMGRPTSGVLGMRFNDGDELLG 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I     +    + + G +Y +        +  RGG G L  +   + G+ + +
Sbjct: 711 ISVVKPDKFLLVATDG-AYAKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGA 762



 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 14/229 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++    E  P  V+ + RG ++  K    D +      A++ +EGD L  A
Sbjct: 600 QPDEQIAQVIEIPNYEVAPYLVLATKRGLVKKTKLTDFDSNRAGGLIAINLREGDELMGA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
           + A   D +LL+S  G++    A +  + R  G     ++ +  N   +++   V     
Sbjct: 660 VLAAAEDDLLLVSAGGQSIRFHATD-EALRPMGRPTSGVLGMRFNDGDELLGISVVKPDK 718

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            LLV +    A      +     R GK  L +  + K    +  ++    D +  +  + 
Sbjct: 719 FLLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGALIVDEDDELFAITSSG 778

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++      + +  R  KGVRL +  DG     +     EG    +   
Sbjct: 779 GVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLAVARNADEGSDVANGGE 827


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/765 (34%), Positives = 407/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+AY L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   +++ 
Sbjct: 593 PLAVGESVTTMIDLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS--DVICFKICE 707
            V   TG+   ++G      + FS   +  M R   GVR      G +     +      
Sbjct: 653 SVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNNDES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 713 EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 593 PLAVGESVTTMIDLERVHEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           IL+ +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 649 DRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRG-IKLNAGDVVVGAGVL 707

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
              +S  ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 708 NNDESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICF 703
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G     I  
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEGDKVASIAV 811


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/761 (32%), Positives = 414/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 2   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 182 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E  +G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 241 VRAKTEIQEE-KGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 300 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNE-PKVLNLKQMLVHYLKFQEEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 359 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 419 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  ++S  D     + +IE+E + + +++ G+I+          +     +
Sbjct: 477 ----GDERRTEIQISNDD--INIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A+  KE D ++      T   IL  +  GK Y L    +        G  +  L+ L+ 
Sbjct: 531 QAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDG 590

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I     +   D     ++ + +G     E ++  +  + G   + +   +++  V  
Sbjct: 591 DEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKM 650

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWI 712
            TGD  V +  +N   + FS   +    R   GV+  + +   I+  +   I       +
Sbjct: 651 TTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIA--VAMDIASNKEDIL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        + KRGG G +  K   ++G  + +
Sbjct: 709 VVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 749



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +     +A +    I+ +   ++ + RG ++  + +         L+A++ ++GD L   
Sbjct: 589 DGDEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGV 648

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   +L+ + +G A      ++    G        I L      V   +  +   +
Sbjct: 649 KMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRKKDIAVAMDIASNKEDI 707

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
           LVVS  G       +E   + R GK  +   S EK  L+V        D + ++  +   
Sbjct: 708 LVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVA 767

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  ++  I   SR   GV L   ++      I 
Sbjct: 768 IRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIA 800


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/794 (33%), Positives = 417/794 (52%), Gaps = 67/794 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  RE I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGREGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + ++  F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVMT 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRAEYGD-----VRRT---EILDARLDLTLGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK Y L    +   S    G  +  L+ L+  + I T      Y     + + ++ G 
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLDEGEYITTMLPVEEYTEGHYIFMATANGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  V +  +  K+  F    +  M
Sbjct: 656 VKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM 715

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R + +          KRGG G +
Sbjct: 716 GRTARGVRGMRLAEG--QKLISMLIPEEGSQILTASERGFGKRTAIGEFPEYKRGGQGVI 773

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 774 AMVSNERNGRLVGA 787



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +        L      +     + +  G ++        +  SV L AL   EGD L  A
Sbjct: 627 DEGEYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 687 AITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLAEGQKLISMLIPEEGSQI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G        E     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 746 LTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   +D++  + R  +GV L      
Sbjct: 806 VRTRVDEVSSLGRNTQGVTLIKLASD 831


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT++P HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   L++NP+ +I++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACQHLLNNPDATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D +
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMAT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           S G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 SLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     +G     +     E  + + +    + +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +++
Sbjct: 780 GMIAIQTSERNGKVVAA 796



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 652 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 711

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L+  Q ++   V       +L  +  G       +E
Sbjct: 712 AVRFDENDVRPMGREARGVRGM-QLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITE 770

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 771 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 830

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 831 GVTLISLDEG 840


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 412/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 390/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  D ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+I  E L+ YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGA-YIYGIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  +E        IVVTEIPY V K++LIE IA+L+   +I  + ++ DES
Sbjct: 240 GKGRVVIRAKAEIE-SHESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNG-RPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ +IR        +  +  RF 
Sbjct: 358 EHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L      + S+L+  +     +  E++ V
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPELCKKVMKDELQAV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSEFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              V       +E D  +    A   + +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +++++ +  +             + ++  ++  +  G                G   + +
Sbjct: 590 MLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKAYSRPRANGVNAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
              +++  V    G + + +   N + + F    +  M R   GVR       D  +  +
Sbjct: 650 VDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTMGRVSTGVRGMRLDGGDDEVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +  + +  +   Y +  +        RGG G        ++G+ +S
Sbjct: 710 VVVNEADKESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVS 761



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 81/213 (38%), Gaps = 15/213 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  ++A++  +GD +      + ++ +
Sbjct: 608 LDDEAFLNSHYVVFATKNGVVKKTLLKAYSRPRANGVNAINIVDGDEVVNVRLTNGSNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKG 621
           +L + +G+A       + +       ++ +     + ++V   V +   K  ++VVS  G
Sbjct: 668 ILANRNGRAVRFDEKAVRTMGRVSTGVRGMRLDGGDDEVVGMVVVNEADKESVMVVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  +   ++  +  VT +  + ++ ++   +  ++  
Sbjct: 728 YGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVSIKNVTDENDLMIINKSGITIRLAVSN 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICE 707
           +  M R   GVRL +   K+  I+ V      E
Sbjct: 788 VRVMGRATQGVRLINLTKKNDVIASVCKVMSSE 820


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/774 (31%), Positives = 397/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNP  S E+     +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EEVG     IV+TE+PYQV    +I  IAE ++  +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEVGN-RQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L  ++AH+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     ++ +  +
Sbjct: 358 LSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q DAIL +RLR L  LE  +I  EL  +      +  +L   ++Q   +  
Sbjct: 418 MQLLGVDEIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDILAREERQREIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ E +        RRT     S        + +I +E + V I+  G+        
Sbjct: 478 ELEEIVEKYGDE-----RRTQIVAASG---DVSDEDLIARENVVVTITATGYAKRTKVDA 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + +G   + +    Y +           RGG+G +  K  P+ GK +++
Sbjct: 708 LSMSVVSDGQFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIAA 761



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D ILL S  G+A    A +    R  G A   +  +    +  +++  V     
Sbjct: 659 QLVNEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVVSDGQ 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIAAISVDEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++   ++QI   SR   GVRL +  D      I   + + 
Sbjct: 778 GVVRTEVNQIRPSSRATMGVRLVNLADDVELLAIDRNVEDD 818


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/797 (30%), Positives = 403/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           + ++    R  +L+GL +A  NID+ IAII+    P   K  ++++              
Sbjct: 368 YELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRA 427

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+ +VK  F  +      R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     D      +     E  + + +    Y +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 715 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 774

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 775 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 690 QSYKDG 695
            S  +G
Sbjct: 835 ISLDEG 840


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/794 (33%), Positives = 416/794 (52%), Gaps = 67/794 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G DF   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVVA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 NQIGELIRILNSAVRLMEVIREELEVIRAEYGD-----VRRT---EILDARLDLTLGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK Y L    +   S    G  +  L+ L+  + I T      Y     + + ++ G 
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMATANGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  V +  +  K+  F    +  M
Sbjct: 656 VKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM 715

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R Y +          KRGG G +
Sbjct: 716 GRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASERGYGKRTAITEFPEYKRGGQGVI 773

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 774 AMVSNERNGRLVGA 787



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +        L      +     + +  G ++        +  SV L AL   EGD L  A
Sbjct: 627 DDGEYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRSVGLIALELDEGDVLISA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 687 AITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       +E     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 746 LTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV 700
           +   +D++  + R  +GV L    KD  +  +
Sbjct: 806 VRTRVDEVSSLGRNTQGVTLIKLAKDETLVGL 837


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/740 (51%), Positives = 519/740 (70%), Gaps = 5/740 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+   +   AL ERYLAYALSTI  R++PD+RDG KPV RR++ AM  + LD  +A+KK
Sbjct: 9   ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTEA
Sbjct: 69  CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A  +++G++E AVDFR TYN E+ EP  F   FPNLLANG+SGIAVGMATSIP H
Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           NV E+ +A   LID+PE   ++LL ++ GPDFPTGG IV+S ++I  +Y  GRG FRVRA
Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI  K++P+L DIRDES E++RIVL 
Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           PK+R++DP LLM+ +F L+ +ETR  LNMNVL     P V+PL  +LKEWLAH+  +L R
Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+
Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR+L++LEE +I +E D+L  E+  + +L+ S   Q  ++  ++  +++ +S  + LG 
Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLG- 487

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VDLSALHFKEGDSLK 552
            R T  E     KA    AMIE+EP+TVV+S RGWIR LK H       A+ FKEGD   
Sbjct: 488 ARQTLIEEQTPAKAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEAD 547

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
              HA+TTDR+L+ + DG+ YTL A  L  GRG GE ++L++D++++  I+     +   
Sbjct: 548 FICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPEG 607

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKL 670
           KLLVVSS G  FI + + ++A TRKGK  ++V  +E + +  V++   DH+A++GENRKL
Sbjct: 608 KLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEGHDHIALIGENRKL 667

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L F + QIPE+++G GV+LQ Y+ G +SD   F + EGL+W         R+E D+  W+
Sbjct: 668 LAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTWV 727

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
             RG  G L P GFP++ +F
Sbjct: 728 VARGASGRLPPVGFPKNNRF 747


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 64  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 243 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 303 VRIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALIHYLEHQK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII  IR  +  K     +  RF L+E 
Sbjct: 362 TVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSER 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + LL   ++++ +L   +     +  E+ E+KE F
Sbjct: 422 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 482 ------GDERRTEIQLGGLD-DIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGR 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 535 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 594

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      + GK  +    ++++  
Sbjct: 595 ENDETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIA 654

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   TG+   ++   +  L+ F    +  + R   GV+  + ++G +  V+   +    +
Sbjct: 655 VRLTTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKGITLREGDV--VVGLDVAHAES 712

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 713 EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIV 756



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + RG ++     +          A+ FKE D L     
Sbjct: 598 ETISTMIAVKDLESEEHYLVFATKRGIVKRSALSNFSRINKNGKIAIGFKEDDELIAVRL 657

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
               + IL+ ++       P   L         ++  I L     +V   V   +S  ++
Sbjct: 658 TTGNEDILIGTSHASLIRFPESALRPLGRTAAGVKG-ITLREGDVVVGLDVAHAESEDEV 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G        E   + R GK     +  E+   +V +T     + + VV     +
Sbjct: 717 LVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVI 776

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   ++ I +  R   GVRL    +G     + 
Sbjct: 777 IRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVA 809


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/763 (31%), Positives = 399/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V ++  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE+++E I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R ++P++++  ++  + ++  F + M  L     P+VM L  IL  +L H+ 
Sbjct: 306 MRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNE-PKVMSLLEILNHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  ++SRF+L++ 
Sbjct: 365 DVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSRFNLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L  +  +  ++L   K     I  EI  + E +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAILADRKLLLGVIKKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I +E + + ++  G+I+               
Sbjct: 485 GD-----DRRTAIG---FDEYDISTEDLIPREDVVITMTKMGYIKRMSNDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++     +T   I+  +  G+ Y L    +        G AI  ++ L
Sbjct: 537 GIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAGRTSRGTAIINILQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        +     L + + KG        +     + G   + +  ++++  V
Sbjct: 597 QPDEKITAMIPIKDFKEGDYLFMATKKGLVKKTPILDYANVRKTGLAAITLREDDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
                +  V +V +  + + F    +    R   GVR  +  D    +V+  ++  +G  
Sbjct: 657 KITDDERDVILVTQYGQCIRFHESDVRSTGRTSMGVRGMNLSD--RDEVVAMQLDAQGEE 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  + +   +           RGG G    K   ++G  + +
Sbjct: 715 LLIVSEKGMGKRTRMEEFTAQNRGGKGVKCYKITEKTGNVVGA 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 486 FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------SL 533
           +         R T        +      A +     ++     + + +G ++        
Sbjct: 576 YEIPEAGRTSRGTAIINILQLQPDEKITAMIPIKDFKEGDYLFMATKKGLVKKTPILDYA 635

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 L+A+  +E D L           ++L++  G+       ++ S       ++ +
Sbjct: 636 NVRKTGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRSTGRTSMGVRGM 695

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            +L+   ++V   +     +LL+VS KG        E  A  R GK        EK   V
Sbjct: 696 -NLSDRDEVVAMQLDAQGEELLIVSEKGMGKRTRMEEFTAQNRGGKGVKCYKITEKTGNV 754

Query: 654 VKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V        D + ++  +  ++      I  + R   GV+L + K+      I 
Sbjct: 755 VGAKAVGPDDEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIA 808


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/756 (32%), Positives = 402/756 (53%), Gaps = 31/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   L   ++  +L Y++S I  RA+PD+RDG KPVHRRI++AM+E  +      KKSA
Sbjct: 97  LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD S+YD++VR+AQ F  R PL+ G GNFG+IDGD  AA RYTE+R+
Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ +D++ VD +  Y+E   EP V P++FPNLL NG++GIAVGMAT++P HN+
Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A   +IDNP+ ++E L++ + GPDFPTGGII+   + I ++Y  GRG   +R++ 
Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIM-GTDGIRDAYTTGRGSITIRSKV 335

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE VGR G   +V+TEIPYQV K  L E+IA+ +  KRI  + D+RDES      ++  
Sbjct: 336 HVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVID 395

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                 P +++ +++  + ++  F +    L  G VP+ + L  ++  ++ H+++++ RR
Sbjct: 396 LKSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDG-VPRTLTLREMIYYYIEHQKDIVTRR 454

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + F +    +RV IL+GLLIA  NIDE++ II    ++ + K  M  RF + + Q +AIL
Sbjct: 455 TQFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFGIDDIQGEAIL 514

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L  L   ++ +++  L    E    LL   ++    I  E+ E+   FS     
Sbjct: 515 QMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHPQKLLEVIKEELTEISTRFSDK--- 571

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    +   +     + +I +E + + +++  +I+          K     +  L 
Sbjct: 572 --RRTQISALGVQNLDI--EDLIAEEDMVITVTHASYIKRLPVATYKSQKRGGKGVQGLS 627

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ-- 600
            K+ D ++    A T D +L  +  GK Y L    L   S    G A+  ++ L+  +  
Sbjct: 628 LKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHARGSALINVLPLSEGEYP 687

Query: 601 -DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
             ++T   + +   L+  +  G       S+   + R G   + +   +++  V +V   
Sbjct: 688 TAVITTRDFPAEEHLMFATKSGMVKKTAMSDYDKSRRDGLIAINLKDGDELVNVRRVKES 747

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG-LTWIDSAG 716
           ++V +     K ++F    I    RG  GVR  + KDG  + ++  +I  G    +    
Sbjct: 748 EYVILCSSAGKAIMFEESDIRPTGRGTSGVRGITLKDG--ATMLGMEISNGKGDLLVVTE 805

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L KRGG+G        + GK  +
Sbjct: 806 HGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKGKLSA 841



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 15/217 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
              E          +    +E +    +  G ++       D S      A++ K+GD L
Sbjct: 680 PLSEGEYPTAVITTRDFPAEEHLMFA-TKSGMVKKTAMSDYDKSRRDGLIAINLKDGDEL 738

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                   ++ ++L S+ GKA      ++    G G +    I L     ++   + +  
Sbjct: 739 VNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITLKDGATMLGMEISNGK 797

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
             LLVV+  G       SE     R G       +      K+     V   H + +V E
Sbjct: 798 GDLLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKG-KLSACRVVGPQHELMIVSE 856

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              ++      I  +SR   GV++ +  +      + 
Sbjct: 857 EGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALA 893


>gi|332798031|ref|YP_004459530.1| DNA gyrase subunit A [Tepidanaerobacter sp. Re1]
 gi|332695766|gb|AEE90223.1| DNA gyrase, A subunit [Tepidanaerobacter sp. Re1]
          Length = 807

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/756 (32%), Positives = 407/756 (53%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   +++ Y+ Y++S I  RA+PD+RDG KP+HRRI++AMS++ L      +KS
Sbjct: 7   KIIPVKIEEEMKKSYIDYSMSVIVGRALPDVRDGLKPIHRRILYAMSQLSLTPDKPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+G  HPHGD ++YD++VRLAQ F  RY L+ G GNFG+IDGD AAA RYTEAR
Sbjct: 67  ATIVGEVMGNYHPHGDAAIYDAMVRLAQDFSTRYLLVDGHGNFGSIDGDPAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+++  +L  +++D VDF   Y+E   EP V P++FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MTRISLEMLSDLNKDTVDFIPNYDESLDEPSVLPARFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +IDNP++++E+L++ I GPDFPTGGI ++    I + Y  GRG   +RA+
Sbjct: 187 LSEVIDGVIMMIDNPDVTVEELMQVIKGPDFPTGGI-IKGYSGIKDMYTTGRGSVVMRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I+VTEIPY V K+R++EKIAEL+  K+I  + D+RDES      ++  
Sbjct: 246 ATIEAMDATRHRIIVTEIPYMVNKARMVEKIAELVRDKKIEGISDLRDESDRKGIRIVMD 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P +++  ++  + M++ F   M  L   + P+V+ L  ++  +L H+++V+ RR
Sbjct: 306 LKRDANPHIILNQLYKHTQMQSTFGAIMLALVDNK-PRVLNLREMIYYYLEHQKDVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +     R+ IL+GL IA  +IDE+IAIIR        +  ++  F L+E Q   IL
Sbjct: 365 TKFDLAKAQERIHILEGLKIALDHIDEVIAIIRGSKDDVTARDALIKNFGLSEKQAQVIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E   LL + +    +L+  K   + I  E+ ++K+ +      
Sbjct: 425 DMRLKRLTALEREKIDEEYAELLKKIDYYQKILSDEKIVLSIIKEELIQIKQKY------ 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T       D     + +I +E I +  ++ G+++          +     ++ + 
Sbjct: 479 GDERRTHITHDEGDFDI--EDLIVEEDIVITQTHFGYVKRQPISAYRSQRRGGRGVTGIT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   ++  +  G  Y L A  +   S    G AI  L+ L  ++ +
Sbjct: 537 TREEDFVEHIFVGTTHHVVMFFTNKGNVYKLKAYEIPDTSRTARGTAIVNLLPLKPDERV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
            T      +D    L+  +  G       SE  ++ R G   + +  ++++  V  V   
Sbjct: 597 NTMITIKDFDEARYLIFATKNGIVKKTLLSEYASSRRTGLIAITLKDDDELIGVRLVDRN 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
           + + +   N   + FS++ +    R  +GV+  + +      V+   I  EG   +    
Sbjct: 657 EEIILGTHNGMSIRFSVNDVSSTGRTSQGVKGINLRSD--DKVVSMDIVREGHDVLVVTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +  ++       RGG G ++ K   ++G    
Sbjct: 715 KGFGKRIDEKEFRCQARGGRGVIIQKITDKTGPLAG 750



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 79/241 (32%), Gaps = 18/241 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           + +         R T        +        +     ++    +  +  G ++      
Sbjct: 568 KAYEIPDTSRTARGTAIVNLLPLKPDERVNTMITIKDFDEARYLIFATKNGIVKKTLLSE 627

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              S    L A+  K+ D L         + I+L + +G +      ++ S     + ++
Sbjct: 628 YASSRRTGLIAITLKDDDELIGVRLVDRNEEIILGTHNGMSIRFSVNDVSSTGRTSQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSE 647
             I+L  +  +V+  +      +LVV+ KG    ++E E     R G+  +       + 
Sbjct: 688 G-INLRSDDKVVSMDIVREGHDVLVVTEKGFGKRIDEKEFRCQARGGRGVIIQKITDKTG 746

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               L V    D + +   +  ++     +I +MSR   GV L   +       +     
Sbjct: 747 PLAGLRVVGENDEIMLCTSSGIMIRLLTSEISKMSRNTMGVTLIKLEQDDFLASMAVVTE 806

Query: 707 E 707
           +
Sbjct: 807 D 807


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 429/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 418/757 (55%), Gaps = 32/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V +   +   Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+EMGL     +KK
Sbjct: 6   DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTEA
Sbjct: 66  SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP H
Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP I++++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VRA
Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE  +G   IV+TEIPY V K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ R
Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL IA   IDE+I IIR+       K  ++ RF L++ Q  AI
Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K  ++    
Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASPRK 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                     +   ++    + +++ E + V +++ G+I+          K     +  +
Sbjct: 483 --------TVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI ++  + 
Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +         D    +L+ + KG        E  +  R G   + +   +++  V    G
Sbjct: 595 VTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDELINVKLTNG 654

Query: 659 DHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSA 715
           +   ++G     ++ F+   +  M R  +GV   S ++    +V+   +       +   
Sbjct: 655 EREVIIGTAKGYVIRFNEKDVRPMGRVARGVMAISLRED--DEVVEMDLVHPDGEVLTVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + + +  +     +  R G G +  K   ++GK +S
Sbjct: 713 EKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVS 749



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 12/210 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
                     A +     +     ++ + +G I+              + A+   E D L
Sbjct: 587 IQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNGIIAITLDENDEL 646

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 +    +++ +  G        ++         +   I L  + ++V   +    
Sbjct: 647 INVKLTNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVMA-ISLREDDEVVEMDLVHPD 705

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVT-GDHVAVVGEN 667
            ++L V+ KG     +  E     R GK  + +       K+  +  V   D   ++  N
Sbjct: 706 GEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSIRCVQPEDEFMIISAN 765

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             L+   +  I +M R  +GV L   +DG 
Sbjct: 766 GILIRMKVKDISKMHRDTQGVTLMKLEDGD 795



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 27/207 (13%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFKSI-----KRNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTL 575
                       +R +   +  + A+  +E D +      H    +L ++  G  K   L
Sbjct: 675 ------------VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEVLTVTEKGFGKRTDL 722

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               +      G+ I  +        +V+        + +++S+ G    ++  +I    
Sbjct: 723 EEYRIQGR--AGKGIIAMKLSKKTGKLVSIRCVQPEDEFMIISANGILIRMKVKDISKMH 780

Query: 636 R--KGKTFLKVSSEEKMKLVVKVTGDH 660
           R  +G T +K+   +++    ++  + 
Sbjct: 781 RDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/761 (32%), Positives = 414/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             E  V  + +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M E+G+     
Sbjct: 3   FDEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKG 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 63  YRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 122

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++   +L+G++++ VDF   ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I
Sbjct: 123 TEAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    + +I+NPE++I +L+  I GPDFPT GIIV     I  +Y  GRG   
Sbjct: 183 PPHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIV-GTSGIKSAYETGRGKII 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  ++E  +G   IV+TEIPYQV KS+LIE +A+L+  KRI  + DIRDES  D   
Sbjct: 242 VRAKTEIQEE-KGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++ +  ++  + M+  F + M  L     P+V+ L  +L  +L  + E+
Sbjct: 301 IVVELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNE-PKVLNLKQMLVHYLKFQEEI 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           L RR+ F +   + R  IL+GL IA   IDE+I +IR+       +  ++ +F+L+E Q 
Sbjct: 360 LTRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL+ L  LE  +I++E + L+   + +  +L +     N I  E+ E+++ +  
Sbjct: 420 QAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  ++S  D     + +IE+E + + +++ G+I+          +     +
Sbjct: 478 ----GDERRTEIQISNDD--INIEDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A+  KE D ++      T   IL  +  GK Y L    +        G  +  L+ L+ 
Sbjct: 532 QAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDG 591

Query: 599 NQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ I     +   D     ++ + +G     E ++  +  + G   + +   +++  V  
Sbjct: 592 DEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGVKM 651

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWI 712
            TGD  V +  +N   + FS   +    R   GV+  + +   I+  +   I       +
Sbjct: 652 TTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAITLRKKDIA--VAMDIASNKEDIL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +        + KRGG G +  K   ++G  + +
Sbjct: 710 VVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGA 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +     +A +    I+ +   ++ + RG ++  + +         L+A++ ++GD L   
Sbjct: 590 DGDEQIQAVISFKEIDDDNYFIMATKRGLVKKTEINQYASIRKNGLNAINLRDGDELIGV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   +L+ + +G A      ++    G        I L      V   +  +   +
Sbjct: 650 KMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRKKDIAVAMDIASNKEDI 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
           LVVS  G       +E   + R GK  +   S EK  L+V        D + ++  +   
Sbjct: 709 LVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTEKTGLIVGARVVKDEDEMMLINSSNVA 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  ++  I   SR   GV L   ++      I 
Sbjct: 769 IRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIA 801


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 430/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F+LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/820 (32%), Positives = 413/820 (50%), Gaps = 88/820 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+
Sbjct: 122 YTEIRMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ PE+SIE+L+EYI GPDFPT  I +  ++ I E+YR GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAI-INGKKGIEEAYRTGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRARAEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M++ F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQ-PKLFNLKEMLEAFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------- 410
           V+ RR+ + ++    R  IL+ L +A  NID IIA+I+                      
Sbjct: 360 VVTRRTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTV 419

Query: 411 ---------DKPKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                    D  +P  +          + +TE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 KAMLEKAGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+  + E F        RRT   E++ +      + 
Sbjct: 480 LLEIIAGLLHILRSPERLMEVIKEELELILEQFGD-----NRRT---EINASAVDISLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L   + I        Y+    +L+ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ-- 677
           G       +E       G   + +   +++  V    G   + +  +  K++ F   +  
Sbjct: 652 GTVKKTALTEYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEV 711

Query: 678 -----------------------IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
                                  +  M RG  GVR  + ++G    V      +    + 
Sbjct: 712 AVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRGIALEEGQ-RVVSLIVPKDDSAILT 770

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +           R   G +  K   R+G  + +
Sbjct: 771 VTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPVVGA 810



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 35/227 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
               A L     E+    ++ ++ G ++        +  S  + A++ K+GD L      
Sbjct: 628 ERITAILPVREYEEGKYILMATSHGTVKKTALTEYSRPRSNGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQLL-- 593
             +  I+L S  GK      G                           R  G     +  
Sbjct: 688 DGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRG 747

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEK 649
           I L   Q +V+  V      +L V++ G     E +E  A +R  K  + +     +   
Sbjct: 748 IALEEGQRVVSLIVPKDDSAILTVTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPV 807

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +  V     D + ++ +   L+      +  + R  +GV +    D 
Sbjct: 808 VGAVQVGENDEIMLISDKGTLVRTPAIGVSIIGRNTQGVTIIRTADD 854


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 388/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENLTIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGA-YIYGIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV+TEIPY V K++LIE IAEL+   +I  + +  DES
Sbjct: 240 GRGRVVMRAKAEIE-SDESHDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALVNG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F    I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E    +  +   Y +        +  RGG G        ++G+ ++
Sbjct: 710 IVVNDSETENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTEKTGRLVA 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++  EGD +      +  + +
Sbjct: 608 LDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKG 621
           ++ + +G+A       + +       ++ +     +  +V   V +   T  ++VVS  G
Sbjct: 668 IIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGMIVVNDSETENVMVVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                +  +     R GK    ++  E   ++  +  VT D  + ++ ++  ++  ++  
Sbjct: 728 YGKRSQVEDYRITNRGGKGVKTLAVTEKTGRLVAIKNVTDDNDLMIINKSGVVIRLAVAD 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
              M R   GVRL +   K+  I+ V      E    ++   R+    ++D 
Sbjct: 788 CRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWAKKSDE 839


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/792 (33%), Positives = 411/792 (51%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI    LALIDNP+++I+ L+E+I GPDFPT GI +  R  IVE+YR GRG   +RA
Sbjct: 186 NLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGI-INGRAGIVEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E   +     I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   V+
Sbjct: 245 RHEIEHDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ ++F  + ++T F +NM  L  G  P+++ L  +L  ++ HRREV+ 
Sbjct: 305 IELRRGENPDVVINNLFAHTQLQTVFGINMVALINGE-PKILNLKEMLDAFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NIDEIIA+I+                         
Sbjct: 364 RRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL+LRL  L  LE  ++++E  ++L 
Sbjct: 424 LERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDILE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +   +  +L    +    I  E+  V   F  +           E++ + +      +I+
Sbjct: 484 KIADLLEILGDPDRLMQVIREELEAVVSEFGDN--------RLTEITSSKRDLTIADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS+ G+ ++         +      +A   K+ D ++  L A++ D IL  S 
Sbjct: 536 EEDLVVTISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT---AFVYDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G  +  ++ L   + I T      Y     +L+ +S G  
Sbjct: 596 RGKVYWLRVFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYPEDQYVLMATSAGVV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   + +       GD  V +     K + F+ + +  MS
Sbjct: 656 KKTPLPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR     +G    V      E    + ++   Y +           RG  G +  
Sbjct: 716 RTARGVRGIRMPEGHHV-VSLIIPQEDAVLLTASENGYGKRTTFDEFPTYSRGSQGVIAM 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  +++
Sbjct: 775 QCSERNGNLVTA 786



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 12/229 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   ++ ++ G ++        +  S  L AL   EGD+L   
Sbjct: 626 EEGERITTFLPVRDYPEDQYVLMATSAGVVKKTPLPNFSRPRSNGLIALSLDEGDTLIGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S+ GKA       +         ++  I +     +V+  +      L
Sbjct: 686 AITKGDAEVMLFSSAGKAVRFNEEAVRPMSRTARGVRG-IRMPEGHHVVSLIIPQEDAVL 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L  S  G        E    +R  +  + +     +   +  +    GD + ++ +   L
Sbjct: 745 LTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERNGNLVTALQLFEGDEMMLISDKGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +    D++  +SR  +GVRL          V   +I E           
Sbjct: 805 VRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAETDAEEVDGEEG 853


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/758 (33%), Positives = 399/758 (52%), Gaps = 32/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KK
Sbjct: 7   DKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA RYTE 
Sbjct: 67  SARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++   +L  +D++ VDF   Y+    EP V P+K PNLL NG++GIAVGMAT+IP H
Sbjct: 127 RMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P++++++L+  I GPDFPTG  I+  RE I+++Y  GRG  ++R+
Sbjct: 187 NLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKIL-GREGILKAYSTGRGSVKMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E + +G   IV+TEIPYQV K+R+IE IA+L   K I  +  +RDES      ++ 
Sbjct: 246 CAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                ++PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR+ V+ R
Sbjct: 306 ELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGH-PRVLTLREVLAYYLEHRKVVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R  F +     R  IL+GLLIA  +IDE+I  IR        K  ++S+F L+E Q  AI
Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSKFDLSEKQSIAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+ E   L    + + S+L    +    I  E+ E K+ ++    
Sbjct: 425 LDMRLRRLTGLERDKIQEEYAELEKTIDYLRSVLADEHKLMGIIRDELLETKKKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              +R T  E   ++     + +I  E + + ++ RG+I+                +  +
Sbjct: 482 ---KRRTQIEADTSE--LNVEDLIPNERMVLTLTRRGYIKRINANVYHTQNKGGRGIKGM 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLNHNQ 600
             K+ D++   L+    + +L  +  G+ Y L +  +    S    G A   L+ L+  +
Sbjct: 537 ATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPEANSRNSKGIAAINLLPLSQGE 596

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +   +     D    L + + +G        E     R G   + +   + +  V    
Sbjct: 597 KVNALIDVDQVDPQANLFMATERGLVKKTSLQEFSNVRRNGLIAISLMDGDHLAKVRMTK 656

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           GD  + +  +    + F    +  M R  +GVR  +  +     VI   I  +    +  
Sbjct: 657 GDQNIILATKQGMAICFKETDVRPMGRNTRGVRGITLAED--DMVIGADILADDSQVLTV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   + +  N     + +RGG G    K  P++G  + 
Sbjct: 715 SEEGFGKRNNVDAYKVQRRGGKGVKNFKITPKTGVIVG 752



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 13/214 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
            A +    ++ +    + + RG ++              L A+   +GD L         
Sbjct: 599 NALIDVDQVDPQANLFMATERGLVKKTSLQEFSNVRRNGLIAISLMDGDHLAKVRMTKGD 658

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L +  G A      ++     +   ++  I L  +  ++ A +     ++L VS +
Sbjct: 659 QNIILATKQGMAICFKETDVRPMGRNTRGVRG-ITLAEDDMVIGADILADDSQVLTVSEE 717

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G              R GK         K  ++V V        + ++  N  ++   I+
Sbjct: 718 GFGKRNNVDAYKVQRRGGKGVKNFKITPKTGVIVGVEVVRNTQELILITSNGIVIRTDIE 777

Query: 677 QIPE-MSRGK-GVRLQSYKDGGISDVICFKICEG 708
            I     R   GV++Q  ++      +     EG
Sbjct: 778 SIGVKKGRNTSGVKIQRLEENDKVAALDTISVEG 811


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 405/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I++  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIEDENISIEALMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILDAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILSSAERLMEVIREELELMRDQFGD-----DRRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATALGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALKEFSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIRLAEGDRVVSLIVPREEGA-IMTVTQNGYGKRTANSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYTEGFNIFMATALGTVKKTALKEFSRPRSAGIIAVNLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D  +L S  GK        +   R  G     +  I L     +V+  V     
Sbjct: 686 ALTNGNDEAMLFSAAGKVVRFAESAV---RAMGRTASGVRGIRLAEGDRVVSLIVPREEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            ++ V+  G       SE    +R   G   +KV+      +  V  V GD + ++ +  
Sbjct: 743 AIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGS 854


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/808 (32%), Positives = 406/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    VSL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A  +L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NPE SI++L+E I  PDFPT GI +   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRNPEASIDELMEIIPAPDFPTAGI-IYGIQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ +G    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKVHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++K +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PKLCNLKDLIKVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP----- 415
           EV+ RR+ F ++    R  +L+GL +A  NIDE IAIIRN   P         KP     
Sbjct: 360 EVVTRRTVFNLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKL 419

Query: 416 -------------------------------VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                               + L++ Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++ E E +  +L   ++    I  E+  +K  F + T LG RR+   E S 
Sbjct: 480 DKIVAEYKEVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQ-TKLGARRS-LVEHSS 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            D +T  + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 538 FDLST--EDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +  G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  M R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMMLEDGQGVIAMLVAEDELQSVLTATVNGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +      R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAITQSERNGKVVAA 803



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A+   EGD L  A        ++L S 
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKLLVVSSKGNAFIVE 627
            GKA      ++     +   ++ ++ L   Q ++   V +     +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMM-LEDGQGVIAMLVAEDELQSVLTATVNGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + ++  E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 ITEYTRHGRGTKGMIAITQSERNGKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGR 834

Query: 684 GK-GVRLQSYKDG 695
              GV L    +G
Sbjct: 835 ATQGVTLIGLDEG 847


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/790 (33%), Positives = 401/790 (50%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L  N  +V+  +      +
Sbjct: 686 DLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAENDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/772 (29%), Positives = 388/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENLTIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E ++  +++D VD  + +++  +EP V P+K PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI +E L+ YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGA-YIYGIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV+TEIPY V K++LIE IAEL+   +I  + +  DES
Sbjct: 240 GRGRVVMRAKAEIE-SDESHDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALVNG-RPRLLSLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR    P         RF+
Sbjct: 358 EHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E + L    +  + +LN  +     +  E++EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+  + +    +     +P+ + +S+ G+I+           
Sbjct: 478 KEKYGDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       +E D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L+++  +  +             + ++  ++  +  G                G   + +
Sbjct: 590 LLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDV 700
              +++  V    G + + +   N + + F    I  M R   GVR     +G   +  +
Sbjct: 650 VEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E    +  +   Y +        +  RGG G        ++G+ ++
Sbjct: 710 IVVNDSETENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTEKTGRLVA 761



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++  EGD +      +  + +
Sbjct: 608 LDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNEL 667

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKG 621
           ++ + +G+A       + +       ++ +     +  +V   V +   T  ++VVS  G
Sbjct: 668 IIANRNGRAVRFHESTIRTMGRVSTGVRGMRLDEGDDAVVGMIVVNDSETENVMVVSENG 727

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                +  +     R GK    +S  E   ++  +  VT D  + ++ ++  ++  ++  
Sbjct: 728 YGKRSQVEDYRITNRGGKGVKTLSVTEKTGRLVAIKNVTDDNDLMIINKSGVVIRLAVAD 787

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
              M R   GVRL +   K+  I+ V      E    ++   R+    ++D 
Sbjct: 788 CRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWAKKSDE 839


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/816 (32%), Positives = 409/816 (50%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ E +  +     RRT     +  +     + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILEEYGDA-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y +   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR    ++G    V+   + +G    +     
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+G  + +
Sbjct: 770 GYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAADKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
           +  D I+L S +GK          S  G        GE +  L            I L  
Sbjct: 688 NGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEE 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G     + SE  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D + ++ +   L+      +  + R  +GV +   +  G   V+  +  + +
Sbjct: 808 VGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTII--RTAGDEKVVGLQRIDEI 861


>gi|332306880|ref|YP_004434731.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/812 (33%), Positives = 412/812 (50%), Gaps = 85/812 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALID PE+SIE+L+EYI GPDFPT    +  R+ I E+YR GRG   +RA
Sbjct: 186 NLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAA-FISGRKGIEEAYRTGRGKIYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + M+T F +NM  L     P+V  L  ILK ++ HRREV+ R
Sbjct: 305 EVKRNESGEVLLNHLYSQTQMQTVFGINMVAL-DKTQPKVFNLLDILKAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID IIA+I+    P                     
Sbjct: 364 RTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL  L  LE  +I SE   LL  
Sbjct: 424 ERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDL 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ ++++ F        RRT   E++ A      + +IE+
Sbjct: 484 IAELLHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIER 535

Query: 518 EPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S  G+++  K              SA   KE D ++  L A+T D IL  ST 
Sbjct: 536 EEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ G   
Sbjct: 596 GRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEEGKYVLMATANGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------- 676
                +       G   + ++  +++  V    G   + +  +  K++ F+         
Sbjct: 656 KTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETG 715

Query: 677 -------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
                         +  M R   GVR    ++G    V+   + +G    + +    + +
Sbjct: 716 AVKIDPETGEEILALRPMGRTATGVRGIRLQEG--QRVVSLIVPQGDGAILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPVEDYPAKSRATQGVVSIKVSERNGKVVGA 805



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 32/233 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+    ++ +  G ++        +  +  + A++  +GD L   
Sbjct: 625 EENERITAILPIQEFEEGKYVLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLL------------ID 595
                +  I+L S  GK          S  G        GE I  L            I 
Sbjct: 685 DITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIR 744

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKL 652
           L   Q +V+  V      +L  +  G        +  A +R   G   +KVS    K+  
Sbjct: 745 LQEGQRVVSLIVPQGDGAILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVG 804

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            V+V   D + ++ +   L+   + ++  + R  +GVRL   + G    V+  
Sbjct: 805 AVQVNESDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLI--RTGADEHVVGL 855


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 415/762 (54%), Gaps = 33/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  V  V +   ++  ++ YA+S I +RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 5   LNEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNK 64

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSA +VGEVI K HPHGD ++YD++VR+AQ +  RY L+ GQGNFG+IDGD AAAYRY
Sbjct: 65  YVKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRY 124

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT VAE IL  +D++ VDF++ ++    EP V PS  PN+L NG SGIAVGMAT+I
Sbjct: 125 TEARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA++DNPEI++++L+E+I GPDFPTGG++  SR  I +++  GRG  R
Sbjct: 185 PPHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGVM--SRTGIRQAFETGRGSIR 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+   EE GRG+  IVVTEIPYQV K+ LI+  A L+ +KRI  + +IRDES      
Sbjct: 243 LRAKVRFEERGRGT-SIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMR 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++F   R   P+L++  ++  + +++ F +N   +     P+V+PL   L  +L HR +V
Sbjct: 302 IVFELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRS-PRVLPLKDALALFLDHRADV 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR++F ++    R  IL+G LIA   +DE+IA+IR        +  +V+ F LTE Q 
Sbjct: 361 VRRRTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAEFGLTEVQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            A+L++RL+ L  LE  +++ E   L AE  +++++L    +    I  E+REVK+ F+ 
Sbjct: 421 QAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILGDANELRKVIKRELREVKKNFAD 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT   ++S  D    ++ +I +E + V ++  G+I+                +
Sbjct: 481 A-----RRT---QISDNDSDISKEDLIAEEHMVVTLTRGGYIKRTPLAAYRAQARGGRGV 532

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
           +A   KE D   + +  +T D +L  +  G+ Y     +L        G  ++ ++ L  
Sbjct: 533 NAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAERAARGSHLRNILPLAE 592

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ + T      +++    +  + +G        E       G   + +   +++  V  
Sbjct: 593 DERVATVLSVRDFNAEGYFVFATRQGMIKKTAIREYGNLNASGLIAINLIEGDELVSVRH 652

Query: 656 -VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL---T 710
              G HV +     + + F    + +  R   GVR    K       +     E L    
Sbjct: 653 GWDGAHVVLATREGQAIRFPEADVRDTGRATQGVRGIRLKPNDALVSLSVIAGEHLGDAE 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +      Y +        +  RGG G +  +  P++G  +S
Sbjct: 713 LLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTPKTGPLVS 754



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 22/230 (9%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSL 551
              E  R       +    +       + +G I+              L A++  EGD L
Sbjct: 589 PLAEDERVATVLSVRDFNAEGYFVFA-TRQGMIKKTAIREYGNLNASGLIAINLIEGDEL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV-- 607
               H      ++L + +G+A   P  ++   R  G A Q +  I L  N  +V+  V  
Sbjct: 648 VSVRHGWDGAHVVLATREGQAIRFPEADV---RDTGRATQGVRGIRLKPNDALVSLSVIA 704

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHV 661
             +    +LL V+  G       S+     R G+  + +    K   +V +      + +
Sbjct: 705 GEHLGDAELLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTPKTGPLVSLDYVRGDEEL 764

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            V+ E   L+   + ++    R  +GV +    DG  +  V+     E L
Sbjct: 765 LVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETL 814


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/790 (33%), Positives = 401/790 (50%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L  N  +V+  +      +
Sbjct: 686 DLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAENDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 429/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/790 (33%), Positives = 401/790 (50%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L  N  +V+  +      +
Sbjct: 686 DLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAENDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 421/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGG+I+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   V+
Sbjct: 244 AKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL+ L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                      +   ++    + +++ E + V +++ G+I+          K     +  
Sbjct: 482 K--------TNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +   +
Sbjct: 534 ISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGE 593

Query: 601 DIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G+   ++G      + F+   I  M R  KGV   S ++    +V+   +   G   +  
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPGSEILVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + +  +     L  R G G +  +   ++GK +S
Sbjct: 712 TEKGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFRSI-----KRNGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++  G       
Sbjct: 675 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPGSEILVVTEKGFGKRTDL 722

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ S+I    R 
Sbjct: 723 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRD 782

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 783 TRGVTLMKLDDGDRVVSTARIENEE 807


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/804 (30%), Positives = 410/804 (50%), Gaps = 79/804 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +  L L+ NP+ ++++L+E I  PDFPT GI +   + + E YR GRG   +RAR   
Sbjct: 190 IVDGCLHLLRNPQATVDELIELIPAPDFPTAGI-IYGIQGVREGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L   + P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQ-PRLLNLKQMLEYFLQHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 FELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+++Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I+ E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 VMAIIADLLDILARPERITTIISDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  +  +      +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
              RG  G +  +   R+G+ +++
Sbjct: 780 RHGRGTKGMIAIQTSERNGRVVAA 803



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     + E    + + RG ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L+ +Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLDESQTVIAMLVAPAETAEQTE 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAV 663
                 +L  +  G       +E   + R  K  + + + E+   VV        D + +
Sbjct: 755 AGSPGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPDDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   + +I EM R   GV L +  +G
Sbjct: 815 ITTGGVLIRTRVAEIREMGRATQGVTLINVDEG 847


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/808 (31%), Positives = 406/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NPE SI++L+E I  PDFPT GI +     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHMLRNPETSIDELMEIIPAPDFPTAGI-IYGINGVKDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLIVVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P   K  +++R      
Sbjct: 360 EVVTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRTRADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   ++A  E +  +L   ++    I  E+  +K+ F +       R +  E S 
Sbjct: 480 DKIVAEYKEVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGA--RRSIIEYSA 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            D +T  + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 538 QDLST--EDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F  + +  + R  +GVR    +DG     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFDENDVRPLGRAARGVRGMMLEDGQSVIAMLVAEDETQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      RG  G +  +   R+GK +++
Sbjct: 776 VEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A++  +GD L  A        ++L S 
Sbjct: 656 FPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ ++ L   Q ++   V  D T  +L  +  G      
Sbjct: 716 GGKAVRFDENDVRPLGRAARGVRGMM-LEDGQSVIAMLVAEDETQSVLTATENGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 IVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGR 834

Query: 684 GK-GVRLQSYKDG 695
              GV L +  +G
Sbjct: 835 ATQGVTLIALDEG 847


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/770 (31%), Positives = 411/770 (53%), Gaps = 34/770 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N + ++++  V +   ++  ++ YA+S I +RA+PD+RDG KPVHRRI++ M  +G
Sbjct: 1   MADINDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A +K A  VGEV+GK HPHGD +VYDS+VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  FTPDKAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ +++  +++ +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP  N+ E+ +  + +I+ P+ +I++L + I GPDFPT GIIV  +  I ++YR 
Sbjct: 181 GMATNIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIV-GKSGIRDAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA   +E++      IVVTE+PYQV K+RL+EKIA+L+  KRI  + D+RDES
Sbjct: 240 GRGRIIMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM----PLDGIL 361
                 ++    R  + ++++  +F  + M+  F +NM  L      +       L   +
Sbjct: 300 DRTGMRIVIELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
             ++ H+++V+ RR+ F +   + R  IL+GL IA  N+DE+I IIR   NE   K  ++
Sbjct: 360 DHYVDHQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RFS +E Q  AI+++RL  L  LE  ++++E   LLA+ +    +L +     + I  E
Sbjct: 420 ERFSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKYYKDVLANEFMVLDIIKEE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+K  F        RRT        +     + +IE++   + +++ G+++       
Sbjct: 480 LGEIKGKFGDE-----RRTKII---PDETDFDVEDLIEEQDSVITLTHFGYVKRLPTDTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
              +     +  L  +E D ++      T D I+  +  GK Y L    +     +  G 
Sbjct: 532 KSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L+ L+  + + T      Y     L++ +  G     +  E     + G T + + 
Sbjct: 592 AIVNLLQLDQEEKVTTVIPIKEYKEGMYLILATKNGVVKKTDLMEYDHIRKGGLTAVALR 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             +++  V    G   + +V +N   + F+ + +  + R  +GVR     D  +  VI  
Sbjct: 652 ENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPLGRVSQGVRGIKLDDDDV--VIGM 709

Query: 704 KI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  E  + +    R + +        +  RGG G L  +   ++GK   
Sbjct: 710 GVFIEDTSLLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTEKTGKIAG 759



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 142/439 (32%), Gaps = 54/439 (12%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            A  +  L+   D   E +RI+   KN +   + LME           F        +  
Sbjct: 384 RAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMERF--------SFSEKQAQAIVDM 435

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
               +      K    ++           +  I    ++L    +    I E +  I+ +
Sbjct: 436 RLGRLTALEREKLEAEYQE---------LLAKIKYYKDVLANEFMVLDIIKEELGEIKGK 486

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL--DNLLAEKEKIDSLLNSG 468
              +         T+  V+ ++  +   +  L  +     L  D   +++     ++   
Sbjct: 487 FGDERRTKIIPDETDFDVEDLIEEQDSVIT-LTHFGYVKRLPTDTYKSQRRGGKGIIGLS 545

Query: 469 KQQWNQIACEIREVKEIF-----SKSTDLGRRRTTFCEVSRADK---ATLQQAMIEKEPI 520
            ++ + +          +     +K      +     E  R  K         + ++E +
Sbjct: 546 TREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAKGTAIVNLLQLDQEEKV 605

Query: 521 T--------------VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTT 560
           T              ++ +  G ++       D      L+A+  +E D L        T
Sbjct: 606 TTVIPIKEYKEGMYLILATKNGVVKKTDLMEYDHIRKGGLTAVALRENDELIDVRLTDGT 665

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             ILL++ +G +      ++       + ++  I L+ +  ++   V+     LLVV+ +
Sbjct: 666 KDILLVTKNGMSIRFNEEDVRPLGRVSQGVRG-IKLDDDDVVIGMGVFIEDTSLLVVTER 724

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G     E  E    TR GK  L     EK   +  +      D V ++  +  ++  +++
Sbjct: 725 GFGKRTELEEYKVQTRGGKGILTYRVTEKTGKIAGMKLVNEKDDVMLISSDGTIIRINVN 784

Query: 677 QIPEMSRGK-GVRLQSYKD 694
            I  + R   GV L    +
Sbjct: 785 DISVLGRATQGVTLMRMDE 803


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/753 (33%), Positives = 416/753 (55%), Gaps = 27/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN    ++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   IVVTE+PY V K+RLIEKIAEL+  KRI  + DIRDES ++   ++  
Sbjct: 246 ATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++S+F  TE Q  AIL
Sbjct: 365 TKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISKFQFTEVQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  EI E+KE +      
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +    D    +      +   + +++ G+I+          K     ++ + 
Sbjct: 482 --RRTKIVQDEHEDFEEEELIQE--QETVITLTHFGYIKRLPLDTYKSQKRGGRGITGIS 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++      T   IL  +  G+ + L A  +   S +  G AI  LI +  ++ I
Sbjct: 538 TREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEGSRQAKGTAIVNLIQIGKDEKI 597

Query: 603 VTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L++ +  G    V  SE    T+ GK  + ++ ++ +  V   +G D
Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V  N   ++F+ + +  M R  +GV+  + +DG    V   K  +G   +      
Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDGDFI-VGMEKASDGKYLLCVTENG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +          KRG  G L  K   ++G  +
Sbjct: 717 FGKRSEIEEYRKTKRGAKGVLTYKVTDKTGSIV 749



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 15/243 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSL---- 533
           +R  +         G       ++ + +K T   A+ + KE   ++ +  G I+ +    
Sbjct: 568 LRAYEVPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSE 627

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +      A+   + DSL         D I+L+S++G        ++ S     + ++
Sbjct: 628 FENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMGRTAQGVK 687

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L     IV          LL V+  G     E  E     R  K  L     +K  
Sbjct: 688 GM-TLEDGDFIVGMEKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTG 746

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFK 704
            +V +      D + +       +   + Q+P   R  +GV+L         +S +   K
Sbjct: 747 SIVDIKMVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIK 806

Query: 705 ICE 707
           + E
Sbjct: 807 VDE 809


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 408/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 A-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++K+
Sbjct: 591 DDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 16/206 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   + ++  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEVT 819


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++ L+ ++T F  NM  L  G  P+++ L   L ++L H++
Sbjct: 302 VRVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDG-RPKLINLKEALVQYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF LTE 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGIDN-IEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      + GK  +    ++++  
Sbjct: 594 ANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G    ++G  +  L+ F+   +  + R   GV+  + ++G    V+   +    +
Sbjct: 654 VRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKGITLREG--DTVVGLDVAHSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVV 755



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
                           +  +    +  +  G ++     +          A+ FKE D L
Sbjct: 592 ELANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--D 609
                      IL+ +           +L         ++  I L     +V   V   +
Sbjct: 652 IAVRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKG-ITLREGDTVVGLDVAHSE 710

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVG 665
           S  ++LVV+  G        E   + R GK     +  E+   VV +T     + + +V 
Sbjct: 711 SEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVT 770

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               ++   +  I +  R   GVRL    +      + 
Sbjct: 771 NGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVA 808


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/816 (31%), Positives = 409/816 (50%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ + +  +     RRT     +  +     + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILDEYGDA-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y +   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR    ++G    V+   + +G    +     
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+G  + +
Sbjct: 770 GYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAADKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
           +  D I+L S +GK          S  G        GE +  L            I L  
Sbjct: 688 NGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEE 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G     + SE  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D + ++ +   L+      +  + R  +GV +   +  G   V+  +  + +
Sbjct: 808 VGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTII--RTAGDEKVVGLQRIDEI 861


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/815 (33%), Positives = 410/815 (50%), Gaps = 84/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRARAEIEEE-NGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 300 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 359 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHV 418

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 419 KGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV   F      G  R T    +  D +   + 
Sbjct: 479 LLEIIAALLFILGSPERLMEVIKEELEEVLTNF------GDERRTVINANEVDMSL--ED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 531 LINEEDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L   + I        Y     +++ +S 
Sbjct: 591 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSH 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 651 GTVKKTALTAYSNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARS 710

Query: 676 -------------DQI---PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                        +++     M R   GVR    +DG     +     EG   +      
Sbjct: 711 SETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGD-ILTVTENG 769

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +        RG  G +  K   R+G  + +
Sbjct: 770 YGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGA 804



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 32/241 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 627 ERITAILPVREYAEDKYIIMATSHGTVKKTALTAYSNPRVNGIIAVNLKDGDQLIGVDIT 686

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
              D I+L S +GK          S  G        GE +  L            I L  
Sbjct: 687 DGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLED 746

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVV 654
            Q +V+  V      +L V+  G     + +E  A +R  KG   +KVS      +  V 
Sbjct: 747 GQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQ 806

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
               D + ++     L+      +  + R  +GV +    +     V+  +  + +   D
Sbjct: 807 VGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED--EKVVGLQRIDEIQVPD 864

Query: 714 S 714
            
Sbjct: 865 V 865



 Score = 44.0 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 6/201 (2%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA  +++  ++       G                 ++A   +     +   
Sbjct: 662 SNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721

Query: 527 RG----WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            G     +R++   +  +  +  ++G ++   +       IL ++ +G           +
Sbjct: 722 TGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPA 781

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
                + +  +     N  +V A       +++++S+KG       + + +  R   G T
Sbjct: 782 KSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVT 841

Query: 641 FLKVSSEEKMKLVVKVTGDHV 661
            ++ + +EK+  + ++    V
Sbjct: 842 IIRTAEDEKVVGLQRIDEIQV 862


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/765 (34%), Positives = 407/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++   +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILGSEARQRQIIKDELDDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+AY L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   +++ 
Sbjct: 593 PLAVGESVTTMIDLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS--DVICFKICE 707
            V   TG+   ++G      + FS   +  M R   GVR      G +     +      
Sbjct: 653 SVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +   + +  +     L KRGG GS   K   ++G  ++
Sbjct: 713 EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVA 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 18/233 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 593 PLAVGESVTTMIDLERVHEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           IL+ +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 649 DRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRG-IKLNAGDVVVGAGVL 707

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
              +S  ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 708 NTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICFKICEGLTW 711
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G    V    +  G   
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEG--DKVASIAVIPGAEI 817


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/797 (30%), Positives = 399/797 (50%), Gaps = 72/797 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             SL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    
Sbjct: 190 VVDACLYLLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           EE+ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ 
Sbjct: 309 RGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLKEILQCFLSHRREVLTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413
           + ++    R  +L+GL +A  NID+ IAII+    P                        
Sbjct: 368 YELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRA 427

Query: 414 ---------KPVMVSR-------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                    +                   + L++ Q   IL +RL+ L  LE+ +I  E 
Sbjct: 428 ETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++A+   +  +L   ++    I  E+  VK  F      G  R +  E++  +     
Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELNAVKVEF------GDVRRSKIELNATE--LNT 539

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  + + V +S+ G+++S         K       A   KE D ++    A+T D I
Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S  G+ Y +    +   S    G  I  +  L   + I        + +   + + +
Sbjct: 600 LCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMTT 659

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677
           + G              +KG   + +   + +       G H V +  +  K + F  + 
Sbjct: 660 ALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDEND 719

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R  +GVR     +G     +     E  + + +    + +           RG  
Sbjct: 720 VRPMGREARGVRGMQLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTK 779

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+G+ +++
Sbjct: 780 GMIAIQTSERNGRVVAA 796



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   EGD L  A        ++L S  GKA  
Sbjct: 655 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVR 714

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L+  Q ++   V       +L  +  G       +E   
Sbjct: 715 FDENDVRPMGREARGVRGM-QLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTR 773

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 774 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 833

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 834 LISLDEG 840


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/816 (31%), Positives = 409/816 (50%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA   VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRALADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ ++ + +  +     RRT     +  +     + 
Sbjct: 480 LLEFIAGLLFILRSPERLMEVIKEELVQILDEYGDA-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y +   +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    GD  + +     K++ F      
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR    ++G    V+   + +G    +     
Sbjct: 712 SETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+G  + +
Sbjct: 770 GYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 ERITAILPVREYAADKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
           +  D I+L S +GK          S  G        GE +  L            I L  
Sbjct: 688 NGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEE 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G     + SE  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               D + ++ +   L+      +  + R  +GV +   +  G   V+  +  + +
Sbjct: 808 VGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTII--RTAGDEKVVGLQRIDEI 861


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/790 (33%), Positives = 402/790 (50%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KKSA
Sbjct: 8   IAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+S+VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA I++  IS+E L+E+I GPDFPT    +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAFIEDENISVEGLMEHITGPDFPTAA-FINGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E   + G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P++M L  I++ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKIMTLKEIIEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F  +     RRT   E++        + +I +E
Sbjct: 486 AELIHILQSAERLMEVIREELVAMRDQFGDA-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATADGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALQEFSRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMGRS 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIRLAEGDKVVSLIVPREEGA-ILTVTQNGYGKRTANSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVVGT 786



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ +E D L   
Sbjct: 626 EANERITAILPVREYTEGFNIFMATADGTVKKTALQEFSRPRSAGIIAINLREDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D  +L S  GK        +   R  G +   +  I L     +V+  V     
Sbjct: 686 ALTNGNDEAMLFSAAGKVVRFAESAV---RAMGRSASGVRGIRLAEGDKVVSLIVPREEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            +L V+  G       SE    +R   G   +KV+      +  V  V  D + ++ +  
Sbjct: 743 AILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVVGTVQVVDSDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            L+   + ++  + R  +GV L    + 
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAED 830


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 430/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F+LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 429/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 407/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+E++  PDFPTGG  +   + + E+Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGG-FIYGMQGVREAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E  G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  +   
Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++++  +F ++ ++T F +N   L  G  P+++ L   +  ++ HR +V
Sbjct: 300 IVVDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVKG-RPRLLSLKDCISNFVNHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+  +   +SRF L E Q 
Sbjct: 359 VIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSRFELDEVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F  
Sbjct: 419 KAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + +L  +  G+ + +    +  G     G AIQ +++++ 
Sbjct: 531 KGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDP 590

Query: 599 NQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I       +        +  ++  +  G        E       G   + +  ++++
Sbjct: 591 DDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRANGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G+  + +   N + + F   ++  M R   GVR  +  + G  +V   +C   
Sbjct: 651 IGVRLTNGENEIIIANRNGRAIRFHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVND 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + + Y +  +     +  RG  G        ++GK ++
Sbjct: 711 PQTETIMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVA 757



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G I+              ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VVFCTKNGIIKKTCLQEYSRPRANGVNAITIREDDRVIGVRLTNGENEIIIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEI 631
                + +       ++ + ID + + ++V     +   T  ++VVS +G     +  + 
Sbjct: 674 FHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVNDPQTETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R  K    ++  EK    + + V    + + ++ ++   +   +  +  M R   G
Sbjct: 734 RVTNRGAKGVKTLNITEKTGKLVAIKVVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/791 (31%), Positives = 402/791 (50%), Gaps = 66/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NPE+ IE+L+EY+  PDFPT G  +     + E YR GRG   +RAR   
Sbjct: 190 VIDACLALLKNPEMDIEELIEYVPAPDFPTAG-FIYGLAGVKEGYRTGRGRVIMRARCHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G+G    I++ E+PYQV K+ L+ KI E++  KR+  + +IRDES +     +    
Sbjct: 249 EDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGMRAVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + D+L+  ++  + M+  F +NM  +  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGENADVLLNKLYKDTQMQDSFGINMVAIVDGQ-PRLLNLKQVMDAFLRHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  +L+GL +A  N+DEIIA+I+    P        +               
Sbjct: 368 FELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVEDMLSRV 427

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L++ Q  AIL LRL+ L  +E+ +I  E   ++ +
Sbjct: 428 SDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEYREVMDK 487

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L   ++    I  E+  VK  F        RR+   E+         + +I  
Sbjct: 488 IADLLDILAKPERVTAIIGDELVAVKTQFGDK-----RRS---EIVTHTHDMSMEDLIPP 539

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G++++ K               A   K+ D +     A+T + IL  S  
Sbjct: 540 EDVVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNK 599

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y +   ++  G     G+ I  L+ L   + I        +     +   ++ G   
Sbjct: 600 GRVYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFAEDKYVFFATANGTVK 659

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
               ++     ++G   + +  ++ +  V    G H V +   + K + F    + E  R
Sbjct: 660 KTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRETGR 719

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR     +      +     E  + + +    Y +           RG  G +  +
Sbjct: 720 ASRGVRGMKLHENQQVISMLVAENEQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIAIQ 779

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 780 TSERNGKVVAA 790



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 13/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      ++      +  G ++        +     + A++  E D L   
Sbjct: 629 EEGEKINAILPVTEFAEDKYVFFATANGTVKKTTLTDFSRPMKRGIIAINLDEDDYLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
                   ++L S  GKA      ++         ++ +  L+ NQ +++  V ++  + 
Sbjct: 689 AITDGHHDVMLFSNSGKAVRFDEADVRETGRASRGVRGM-KLHENQQVISMLVAENEQQS 747

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L  +  G        E   + R  +  + + + E+   VV  T     D + ++G N  
Sbjct: 748 VLTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSERNGKVVAATLVNPEDEIMMIGTNGV 807

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           L+   + +I EM R   GV L + + G
Sbjct: 808 LIRTRVREIREMGRTTQGVTLMNLEKG 834


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/790 (31%), Positives = 408/790 (51%), Gaps = 65/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D+D VD+ D Y+  +  PVV P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 SKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A LALI++ +I+I+ L+ Y+ GPDFPTG I +  R  IV++YR GRG   VRA+ 
Sbjct: 188 REVVNACLALINDSDITIDDLMRYLPGPDFPTGAI-INGRAGIVQAYRTGRGRIYVRAKA 246

Query: 257 C-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + +   G   I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+  
Sbjct: 247 EVITDEKTGRDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    D+++ +++  + ++  F +NM  L  G+ P+V+ L  IL+ +L HRREV+ RR
Sbjct: 307 LRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + + ++    R  +L+GL IA  NID +I +++    P                      
Sbjct: 366 TLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL+LRL  L  LE  ++  E  + L E 
Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLIEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+ E+   F        RRT   E+  + +    + +I  E
Sbjct: 486 ADLMDILQDPERLLAVIREELEEITAEFGDE-----RRT---EIRDSQEDLTAEDLITPE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              V +S+ G+ ++         +   +  +AL  K+ D ++  L A+T D +L  S  G
Sbjct: 538 DRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFI 625
           K Y +    +        G  +  L+ L+  + + +    +       + + ++ G    
Sbjct: 598 KVYWIKVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG 684
            + +   A    G   + +  ++ +       G   V +     K   FS   +  M R 
Sbjct: 658 TDLASF-APRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMGRA 716

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR  +  +G     +      G T +  +   Y +           RGG G +    
Sbjct: 717 SRGVRGINLAEGHRMISLLVPDATG-TVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMAS 775

Query: 744 FPRSGKFLSS 753
             R+G+ + +
Sbjct: 776 SQRNGRLVGA 785



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 15/207 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIAL 555
           +      + L       +    + +  G+++     S    +   +     + D L    
Sbjct: 626 DEGERVTSILPLEEHTDDRFIFMATANGYVKKTDLASFAPRSAGLRAIVLGDDDVLVGTA 685

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCK 613
               +  ++L S++GKA       +   R  G A + +  I+L     +++  V D+T  
Sbjct: 686 ITDGSQDVMLFSSEGKATRFSESAV---RPMGRASRGVRGINLAEGHRMISLLVPDATGT 742

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKV-TGDHVAVVGENRK 669
           +L VS  G        +     R GK  + ++S     ++   ++V +GD + ++     
Sbjct: 743 VLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRNGRLVGALQVFSGDELMLISNQGT 802

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           L+    DQ+ ++ R  +GVR+   K+G
Sbjct: 803 LVRTQCDQVSQLGRNTQGVRIIRTKEG 829


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/773 (28%), Positives = 388/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G
Sbjct: 1   MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNP+IS + L+E+I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IA+L+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALV-GGRPRLLSLRECIKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            HR +V  RR+ F ++    R  IL+ L+ A  NIDE++ +IR    P         RF 
Sbjct: 358 EHRHDVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEERFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             E Q  AI+++RL  L  L   Q+  E + L+   + +  +L++ ++    +  E++EV
Sbjct: 418 FDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPERCKEVMKAELQEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RRT   E+   +     +     +P+ + IS+ G+I+           
Sbjct: 478 KEKYGD-----DRRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       ++ D  +    A     +L  +  G+ Y +   ++  G     G AIQ 
Sbjct: 530 RGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQN 589

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++ L+    +             +  +  ++  + +G                G   + +
Sbjct: 590 MLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAINI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  +++  V    G + + +   N +   F   +I  M R   GVR     + G  +V+ 
Sbjct: 650 NEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSMGRVSTGVRGMRLDEDGQDEVVG 709

Query: 703 FKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +       T +  +   Y +        L  RGG G        ++G+ ++
Sbjct: 710 MIVVNDPVNETVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNITDKTGRLVA 762



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 86/217 (39%), Gaps = 16/217 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V  + +G ++     +        + A++  EGD +      +  + +++   +G
Sbjct: 615 DSHFVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNG 674

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVE 627
           +A       + S       ++ + +D +   ++V   V +      ++VVS +G     +
Sbjct: 675 RACRFDESKIRSMGRVSTGVRGMRLDEDGQDEVVGMIVVNDPVNETVMVVSEEGYGKRSQ 734

Query: 628 ESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            ++     R GK    ++  +   ++  +  VT  + + ++ ++  ++  S+ +   M R
Sbjct: 735 VADYRLTNRGGKGVKTLNITDKTGRLVAIKNVTDANDLMIINKSGIVIRMSVAECRVMGR 794

Query: 684 GK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
              GVRL +   K+  I+ V      E  + ++   R
Sbjct: 795 ATQGVRLINLAKKNDVIASVCKVMSSEMESQVEEESR 831


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/808 (31%), Positives = 409/808 (50%), Gaps = 71/808 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TSFAKETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VRLAQ F  R+ L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A  +L  +D++ VDF+D Y+  + EP V PS+ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L L+ NP+ +I++L+E +  PDFPT GI +     + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGI-IYGINGVKDGYRTGRGKV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K+I  +  I+DES +  
Sbjct: 241 VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  +++ +L HRR
Sbjct: 301 MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLQHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 360 EVVTRRTVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRSRADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++AE + +  +L   ++    I  E+  +K+ F +S      R +  E S 
Sbjct: 480 DKIVAEYKDVMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGA--RRSLVEHSA 537

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            D +T  + +I    + V +S+ G+I+S         K       A   KE D +     
Sbjct: 538 FDLST--EDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I  A         
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRN 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + +   + + +S G        E     + G   + +   + +       G H V +  +
Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K + F+ D +  + R  +GVR  S   G     +     E  + + +    Y +  + 
Sbjct: 716 GGKAVRFAEDDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTSI 775

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RG  G +  +   R+GK +++
Sbjct: 776 TEYTRHGRGTKGMIAIQQSERNGKVVAA 803



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A++  +GD L  A        ++L S 
Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVE 627
            GKA      ++     +   ++ +  L+  Q ++   V +   + +L  +  G      
Sbjct: 716 GGKAVRFAEDDVRPLGRNARGVRGM-SLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 775 ITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGR 834

Query: 684 GK-GVRLQSYKDGG 696
              GV L    +G 
Sbjct: 835 ATQGVTLIGLDEGA 848


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/756 (33%), Positives = 412/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   +++ Y+ YA+S I  RA+PD+RDG KP+HRRI++AMSE+ L      +KS
Sbjct: 7   KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVG+V+GK HPHGD ++YD++VRLAQ F  RYPLI G GNFG+IDGD  AA RYTEAR
Sbjct: 67  ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D VDF   +++   EP V PS+FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 LSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +I+NP+++ ++L+  I GPDFPTGGII+  RE I E Y  GRG   VRA+
Sbjct: 187 LSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIIL-GREGIREMYTTGRGSIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+RLIEKIAEL+  K +  + D+RDES  +   ++  
Sbjct: 246 ATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F   M  L   + PQV+ L  ++  +L H++EV+ RR
Sbjct: 306 LKRDANAHVILNQLYKHTQMQVTFGAIMLALVENK-PQVLTLREMIYHYLRHQQEVVVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + + +   + RV IL+GL IA  ++DE+IA+IR        +  ++  F LTE Q   IL
Sbjct: 365 TKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   LL + +    +L   K  +  I  E+ ++KE F      
Sbjct: 425 DMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
            RR     EV   D    +Q +I +E + + ++  G+++          K     ++ + 
Sbjct: 482 -RRTRIVAEVKDFD----EQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGIT 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            +E D ++  L A T   +L  +  G  Y L A  +        G AI  L+ L   + +
Sbjct: 537 TREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLKPQEKV 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658
                   +     L++V+ +G       SE  ++ + G   + ++S +++  V  V   
Sbjct: 597 NAVIPIKDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVGKK 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
           D + +   +   + FS++ +    R  +GV+  +  +G   +V    +   G   +    
Sbjct: 657 DELILGTSHGMSIRFSVEDVTPTGRTARGVKAITLGEG--DEVASMDVTSVGSDVLVITE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +        +  RGG G +  +    +G+ + 
Sbjct: 715 KGFGKRTPLDEYRIQTRGGRGIITQRVTDTTGRLVG 750



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 13/199 (6%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+++ RG ++       + S      A+    GD L         D ++L ++ G +   
Sbjct: 612 VMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVGKKDELILGTSHGMSIRF 671

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
              ++         ++  I L    ++ +  V      +LV++ KG        E    T
Sbjct: 672 SVEDVTPTGRTARGVKA-ITLGEGDEVASMDVTSVGSDVLVITEKGFGKRTPLDEYRIQT 730

Query: 636 RKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R G+  +     +     + L V   GD + +   +  ++   +  I  MSR  +GV L 
Sbjct: 731 RGGRGIITQRVTDTTGRLVGLRVVAEGDDIILCTASGMMIRLEVSGISSMSRNTRGVTLM 790

Query: 691 SYKDGG-ISDVICFKICEG 708
             ++G  +S V   +  E 
Sbjct: 791 KLEEGDQVSAVAVIRESED 809


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/765 (31%), Positives = 395/765 (51%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G      + 
Sbjct: 11  HDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSMFDSGFRPDRGYN 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE
Sbjct: 71  KCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+  +A  +L  ++ED VDF D Y+    EP V PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 131 SRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++E+ E  +  ++NPE + ++LL      I GPDFPT  +I+     I ++YR GRG 
Sbjct: 191 HNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMIL-GTSGIEDAYRTGRGS 249

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308
            R+RA   VEE  +G   +VV+E+PYQV    L+E IA L+   ++  + DI DES +  
Sbjct: 250 VRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGISDIADESNSRS 309

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ ++F  + ++  F +NM  L  G VP+ + LD I++ ++ H+
Sbjct: 310 GMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDG-VPRTLRLDQIIRHYVKHQ 368

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D+ +P +++   + E
Sbjct: 369 MDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARPALMTLLDIDE 428

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  EL  +  E   +  +L   ++Q   I  E+  + + 
Sbjct: 429 IQAVAILDMQLRRLAALERQRIIDELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDK 488

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT     S        + +I  E + V I+  G+         RS K   
Sbjct: 489 YGD-----DRRTKIIGFSG---DVTDEELIAVEDVVVTITRTGYAKRTKTDLYRSQKRGG 540

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
             +     K+ D ++      T D IL  +  G+ Y   A  L        G+ +  L+ 
Sbjct: 541 KGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYELPEANRNARGQHVANLMA 600

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I        Y+    L++ + +G     + ++  +N   G   + +   +++  
Sbjct: 601 FQPDEQIAQVIQIKNYEVAPYLVLATKRGLVKKTKLTDFDSNRSGGLIAINLREGDELVG 660

Query: 653 -VVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            V+    D + +V    + + F      +  M R   GV    + DG     I   + EG
Sbjct: 661 AVLAAAEDDLLLVSAEGQSIRFHATDEALRPMGRPTSGVMGMRFNDGDELLGISV-VKEG 719

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y++        +  RGG G L  +   + G+ + +
Sbjct: 720 KFLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHDRKRGRLVGA 764



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + RG ++  K    D +      A++ +EGD L  A
Sbjct: 602 QPDEQIAQVIQIKNYEVAPYLVLATKRGLVKKTKLTDFDSNRSGGLIAINLREGDELVGA 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
           + A   D +LL+S +G++    A +  + R  G     ++ +  N   +++   V     
Sbjct: 662 VLAAAEDDLLLVSAEGQSIRFHATD-EALRPMGRPTSGVMGMRFNDGDELLGISVVKEGK 720

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +  G +      +     R GK  L +       ++   + V   D +  +  + 
Sbjct: 721 FLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHDRKRGRLVGALIVDAEDELYAITSSG 780

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++      + +  R  KGVRL +  +G     +     E
Sbjct: 781 GVIRTPAGDVRKAGRQTKGVRLMNLGEGTTLLAVARNADE 820


>gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682593|gb|EGJ55495.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 855

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 407/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  V++   + + Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK ARIVGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  + E ++  ++++ VD  + +++   EP V P+K PNLL NG SGIAVGMAT+I
Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I I+ L+EYI  PDFPTGG  +   + + ++Y  GRG   
Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEYIKAPDFPTGG-FIYGMQGVRDAYETGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E  G     IV+TEIPY V K+ LI++IA+L+  K+I  + +  DES  +   
Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNDKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++++  +F ++ ++T F +N   L  G  P+++ L   +  ++ HR +V
Sbjct: 300 IVVDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVKG-RPKLLSLKDCISNFVNHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++  + R  IL+GL+IA  NIDE++ IIR+   P+  +   ++RF L E Q 
Sbjct: 359 VIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMNRFELDEVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+++E D LL + E    +L+        I  E+ EVKE F  
Sbjct: 419 KAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + +L  +  G+ + +    +  G     G AIQ +++++ 
Sbjct: 531 KGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDP 590

Query: 599 NQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I       +        +  ++  +  G        E       G   + +  ++++
Sbjct: 591 DDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRTNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G+  + +   N + + F   ++  M R   GVR  +  + G  +V   +C   
Sbjct: 651 IGVRLTNGENEIIIANRNGRAIRFHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVND 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + + Y +  +     +  RG  G        ++GK ++
Sbjct: 711 PQTETIMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVA 757



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 72/187 (38%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G I+              ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VVFCTKNGIIKKTCLQEYSRPRTNGVNAITIREDDRVIGVRLTNGENEIIIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEI 631
                + +       ++ + ID + + ++V     +   T  ++VVS +G     +  + 
Sbjct: 674 FHESKVRAMGRTATGVRGMTIDEDGSDEVVGMVCVNDPQTETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R  K    ++  EK    + + V    + + ++ ++   +   +  +  M R   G
Sbjct: 734 RVTNRGAKGVKTLNITEKTGKLVAIKVVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/764 (33%), Positives = 415/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  L L  NP+I+I +L+E I GPDFPT GII+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVVTEIPYQV K+R+IEKIAEL+  K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++++ +++ L+ ++T F  NM  L  G  P+++ L   L ++L H++
Sbjct: 302 VRVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDG-RPKLINLKEALVQYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF LTE 
Sbjct: 361 VVVRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LLA  ++++ +L   +     +  E+ E+KE F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGIDN-IEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      + GK  +    ++++  
Sbjct: 594 ANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G    ++G  +  L+ F+   +  + R   GV+  + ++G    V+   +    +
Sbjct: 654 VRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKGITLREG--DTVVGLDVAHSES 711

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVV 755



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 14/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
                           +  +    +  +  G ++     +          A+ FKE D L
Sbjct: 592 ELANDESISTMIAVNDLESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--D 609
                      IL+ +           +L         ++  I L     +V   V   +
Sbjct: 652 IAVRLTDGQQDILIGTAHASLIRFAETSLRPLGRTAAGVKG-ITLREGDTVVGLDVAHSE 710

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVG 665
           S  ++LVV+  G        E   + R GK     +  E+   VV +T     + + +V 
Sbjct: 711 SEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVT 770

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               ++   +  I +  R   GVRL    +      + 
Sbjct: 771 NGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVA 808


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/790 (31%), Positives = 403/790 (51%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF+  Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI +A   
Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE SI++L+E +  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 ILNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSHFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NID+ IAII+    P   K  ++ R                     
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATS 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++  + I  E+  +K  F      G  R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITSIIFDELTTIKSEF------GDERRSKIEMNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 DMVVTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G+H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQSVIALLVAGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQSVIALLVAGDEQQSVLTATENGYGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITNTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/810 (30%), Positives = 404/810 (49%), Gaps = 85/810 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +LQ +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NP+ ++++L+E +  PDFPT GI +   + + E YR GRG   +RAR   
Sbjct: 190 VVDACLHLLRNPDATVDELIELVPAPDFPTAGI-IYGIQGVREGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLDAFLSHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP------------- 415
           F ++    R  +L+GL +A  NIDE IAII+    P         KP             
Sbjct: 368 FELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLARA 427

Query: 416 ----------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++     +  +L   ++    I  E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 VMGLIADLLDILARPERITTIITEELGAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L   + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       ++     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------------TWIDSAGRSYNRSE 723
            M R  +GVR  +  +G     +     E                 + + +    Y +  
Sbjct: 720 PMGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSVLTATENGYGKRT 779

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    RG  G +  +   R+G+ +++
Sbjct: 780 PISEYTRHGRGTKGMIAIQTSERNGRVVAA 809



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 28/219 (12%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     + E    + + RG ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L+  Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLDEGQAVIAMLVAPAESAETES 754

Query: 613 -----------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---- 657
                       +L  +  G       SE   + R  K  + + + E+   VV       
Sbjct: 755 SVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGRVVAAALVSP 814

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            D + ++     L+   + +I EM R   GV L +  +G
Sbjct: 815 EDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEG 853


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/760 (30%), Positives = 380/760 (50%), Gaps = 37/760 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      +KK AR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARV 61

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDSAAA RYTE R+++
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + E ++  +++D VD  + +++   EP V P+K PNLL NG +GIAVGMAT+IP+HN+ E
Sbjct: 122 MGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGE 181

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +   A IDNPEIS + L+E+I  PDFPTG   +   + + ++Y  GRG   +RA+  +
Sbjct: 182 VIDGCCAYIDNPEISTDGLMEFIPAPDFPTGA-YIYGLQGVKDAYETGRGRVVMRAKAEI 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        IVVTEIPY V K +LIE IA+L+   ++  + ++ DE+      ++    R
Sbjct: 241 E-SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKR 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNCIALVAG-RPRLLSLRECIKYFVEHRHDVTIRRAQF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435
            ++    R  IL+ L+ A  NIDE++ IIR    P     +   RF   E Q  AI+++R
Sbjct: 359 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKRFDFDELQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+  E + L+   + +  +LN+ ++    +  E++EVKE +        R
Sbjct: 419 LSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEVKEKYGD-----DR 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   E+   +     +     +P+ + IS+ G+I+              V       +E
Sbjct: 474 RT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQARGGVGSKGARTRE 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y +   ++  G     G AIQ ++ L     +   
Sbjct: 531 KDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSLEPGDSVNAF 590

Query: 606 F--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                     +  +  ++  + +G                G   + ++  +++  V    
Sbjct: 591 LRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTN 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG---LTWI 712
           G + + +   N +   F    I  M R   GVR     D G  +V+   +       T +
Sbjct: 651 GHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVVGMIVVNDPVKETVM 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        L  RGG G        ++GK ++
Sbjct: 711 VVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVA 750



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 84/214 (39%), Gaps = 16/214 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  + +G ++     +        + A++  EGD +      +  + +
Sbjct: 596 LDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGHNEL 655

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           ++   +G+A      N+ +       ++ + +D +   ++V   V +   K  ++VVS +
Sbjct: 656 IIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVVGMIVVNDPVKETVMVVSEE 715

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  +K   +  +  VT D  + ++ ++  ++  S+ 
Sbjct: 716 GYGKRSQVEDYRLTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIVIRMSVA 775

Query: 677 QIPEMSRGK-GVRLQSY--KDGGISDVICFKICE 707
           +   M R   GVRL +   K+  I+ V      E
Sbjct: 776 ECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 809


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/788 (30%), Positives = 396/788 (50%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+ NPE ++++L++ I  PDFPT GI +     + E YR GRG   +R R  V
Sbjct: 190 VVDACLVLLKNPETTVDELIDIIPAPDFPTAGI-IYGTLGVKEGYRTGRGRVVMRGRTHV 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           + ++    R  +L+GL +A  N+DE+IA+I+    P     S  +               
Sbjct: 368 YELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLKRA 427

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 428 AMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 487

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  +++ F        RR+   E+    +    + +I  + +
Sbjct: 488 LLDILAKPERVTQMIVDELAAIRQQFGDE-----RRS---EIVHNAQDLSLEDLITPQDV 539

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+++S         +       A   KE D +     A+T D IL  S+ G+ 
Sbjct: 540 VVTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRV 599

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y L    +  G     G+ I  L  L   + I        +D    + + +++G      
Sbjct: 600 YWLKVYEVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFDENHFIFMATAQGTVKKTA 659

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
             E     R G   + +   + +       G + + +V    K + F  + +  M R  +
Sbjct: 660 LVEFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTR 719

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR            +     +  T + +    Y +           RG  G        
Sbjct: 720 GVRGMKLMAKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSE 779

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 780 RNGSVVAA 787



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 79/222 (35%), Gaps = 15/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     ++     + + +G ++              + A++  +GD L  A
Sbjct: 626 EDGEKINAILPVKEFDENHFIFMATAQGTVKKTALVEFSNPRRAGIIAINLDDGDYLIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +  + I+L+S  GKA      ++ +   +   ++ +  +   + I      D    +
Sbjct: 686 EVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTRGVRGMKLMAKQRVISLLIAEDDKQTV 745

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKL 670
           LV +  G       S+   + R  +G   +  S      +  ++    D + ++     L
Sbjct: 746 LVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERNGSVVAARLVSDEDEIMLITTGGVL 805

Query: 671 LIFSIDQIPEMSRGK-GVRLQSY----KDGGISDVICFKICE 707
           +   + +I E+ R   GV L +     K  G+  V+     +
Sbjct: 806 IRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDAD 847


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/812 (33%), Positives = 413/812 (50%), Gaps = 85/812 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   KEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALI +P I+I+ L+ +I GPDFPT  + +  R+ I ++YR GRG   +RA
Sbjct: 186 NLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAM-ISGRKGIEDAYRTGRGKIYLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVV EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+   ++L+  ++  + ++T F +NM  L  G+ P+V  L   L+ ++ HRREV+ R
Sbjct: 305 EVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLECFILHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID II +I+    P                     
Sbjct: 364 RTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL  
Sbjct: 424 ERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +LNS ++    I  E+ +V++ F        RRT   E++ A      + +IE+
Sbjct: 484 IAELLHILNSPERLMEVIQEELEKVRDEFGDE-----RRT---EITAASHDIDIEDLIEQ 535

Query: 518 EPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S  G+++  K              SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ G   
Sbjct: 596 GRLYWLKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------- 676
             + S        G   + ++  +++  V    G D + +  +  K++ F+         
Sbjct: 656 KTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETG 715

Query: 677 -------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNR 721
                         +  M R   GVR    +DG    V+   + +G    + +    + +
Sbjct: 716 EVKRDPETGEELLALRPMGRTATGVRGIRLQDG--QKVVSLIVPKGDGPILTATENGFGK 773

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      R   G +  K   R+GK + +
Sbjct: 774 RTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 805



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 91/272 (33%), Gaps = 33/272 (12%)

Query: 479 IREVKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +  F+     GR        E +    A L     E+    ++ +  G ++     
Sbjct: 601 LKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLMATANGTVKKTDLS 660

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG------------ 578
              +  S  + A++  EGD L      H  D I+L S  GK                   
Sbjct: 661 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRD 720

Query: 579 -----NLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                 LL+ R  G     +  I L   Q +V+  V      +L  +  G        + 
Sbjct: 721 PETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGPILTATENGFGKRTPLEDY 780

Query: 632 IANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            A +R   G   +KVS      +  V     + + ++ +   L+   + ++  + R  +G
Sbjct: 781 PAKSRATQGVVSIKVSERNGKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVVGRNTQG 840

Query: 687 VRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
           VRL    +G  +  +   +  E L   D  G 
Sbjct: 841 VRLIRTVEGEHVVGLQRIEEVEELQEFDEDGN 872


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/790 (31%), Positives = 399/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E +  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------------- 422
            R  +L+GL +A  NIDE IAII+    P   K  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASA 418

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITAIIVDELTSIKSEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     +G     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLDEGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATALGTVKKTPLEAFSRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L+  Q+++   V  D    +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLDEGQNVIALLVAGDEQQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGRVVAATLVDQEAQIMLITTTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 401/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E +  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  +L  +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS------------------- 422
            R  +L+GL +A  NIDE IAII+    P   K  +++R                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASA 418

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q   IL +RL+ L  LE+ +I  E   ++A+ 
Sbjct: 419 GGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  +K  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITAIIVEELTSIKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D +     A+T D IL  S  G
Sbjct: 531 EMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSADKFVFMGTALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     RKG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +    +      RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMGTALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q+++   V  D    +L  +  G        E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPIIE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T       + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 418/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                      +   ++    + +++ E + V +++ G+I+          K     +  
Sbjct: 482 K--------TSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G+   ++G      + F+   I  M R  KGV   S ++    +V+   +       +  
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPNSEILVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  +     L  R G G +  +   ++GK +S
Sbjct: 712 TENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFRSI-----KRNGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++ +G       
Sbjct: 675 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDL 722

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ S+I    R 
Sbjct: 723 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRD 782

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 783 TRGVTLMKLDDGDRVVSTARIENEE 807


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/806 (31%), Positives = 409/806 (50%), Gaps = 83/806 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +  L L+ NP+ ++++L+E I  PDFPT GI +   + + E YR GRG   +RA+   
Sbjct: 190 IVDGCLHLLRNPQATVDELIELIPAPDFPTAGI-IYGIQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  K+I  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+  P++++ +++  + ++  F +NM  L   + P+++ L  +L+ +LAHRREV+ RR+ 
Sbjct: 309 RNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQ-PRLLNLRQMLEYFLAHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  +L+GL +A  NIDE IAII+    P   K  ++++              
Sbjct: 368 FELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVREMLARA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E  +
Sbjct: 428 EGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A    +  +L   ++    I  E+  ++  F      G  R +  E++  +  T  + 
Sbjct: 488 IMAVITDLLDILARPERITAIIVDELTAIRAEF------GDERRSQIELNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D+   + + +++
Sbjct: 600 FSNRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEHFIFMATAR 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL-----------TWIDSAGRSYNRSENDLL 727
            M R  +GVR  + +DG    VI   +               + + +    Y +      
Sbjct: 720 PMGRQARGVRGMNLEDGQT--VIAMLVAPAETAEEAEAGMRGSVLTATENGYGKRTPIAE 777

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
                RG  G +  +   R+G+ +++
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGRVVAA 803



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 70/213 (32%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     + E    + + RG ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDAEHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEDGQTVIAMLVAPAETAEEAE 754

Query: 614 ------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAV 663
                 +L  +  G       +E   + R  K  + + + E+   VV        D + +
Sbjct: 755 AGMRGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   + +I EM R   GV L +  +G
Sbjct: 815 ITTGGVLIRTRVAEIREMGRATQGVTLINVDEG 847


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/792 (33%), Positives = 418/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +KK
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  ++  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA++DNP+I+I++L+EYI GPDFPTG I +  R  IVE+YR GRG   +RA
Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAI-INGRAGIVEAYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E   + G   I+VTEIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   ++
Sbjct: 245 KAEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++   D+L+ ++F  + ++T F +NM  L  G+ P+++ L  +L+ ++ HRREV+ 
Sbjct: 305 IEVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQ-PKLLNLKDMLEAFIRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------- 417
           RR+ + ++    R  IL+GL +A  NIDE+I +I+    P                    
Sbjct: 364 RRTVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPF 423

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  R+ L+  Q  AIL+LRL  L  +E  ++ +E D+ + 
Sbjct: 424 LERAGDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  +   +L +  +    I  E+ +V   F  +     RRT   E+  +      + +I 
Sbjct: 484 EIAEYLEILGNAIRLMEVIRAELEQVIADFGDA-----RRT---EIIASSLDLTTEDLIA 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E   V IS+ G+ +S         +   +  SA   K+ D ++  L A T D IL  ++
Sbjct: 536 VEDRVVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTS 595

Query: 569 DGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y+L    +     +  G  +  L+ L   + I +      YD+   + + + KG  
Sbjct: 596 VGKVYSLKVYMIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFIFMATRKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                +E  +    GK  +++   + +       G   V +   + K   F   Q+  M 
Sbjct: 656 KKTVLTEFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR     +G     +   +  G   +  +   Y +           RG  G +  
Sbjct: 716 RSSRGVRGIRIAEGQFIVGMVIPLA-GGQVLTVSENGYGKRTPVDEFPAKGRGSQGVIGM 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G+ + +
Sbjct: 775 QTTDRNGELVGA 786



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 16/208 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      + L     + +    + + +G ++           +    A+   EGD+L   
Sbjct: 626 EEGERITSILPVKSYDNDHFIFMATRKGTVKKTVLTEFQSLRANGKRAIELDEGDTLVGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +    ++L S+ GKA       +   R  G + + +  I +   Q IV   +  +  
Sbjct: 686 AVTNGACDVILFSSSGKAARFRESQV---RAMGRSSRGVRGIRIAEGQFIVGMVIPLAGG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L VS  G        E  A  R  +  +       + E +  V    G+ + ++ +  
Sbjct: 743 QVLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNGELVGAVQVFDGEEIMLISDQG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            ++   +D++  +SR  +GVRL   KDG
Sbjct: 803 TMVRTRVDEVSLLSRNTQGVRLIKLKDG 830



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   S  +  +   EG  +   +      ++L +S +G     P     +     + 
Sbjct: 711 VRAMGRSSRGVRGIRIAEGQFIVGMVIPLAGGQVLTVSENGYGKRTPVDEFPAKGRGSQG 770

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           +  +   + N ++V A       +++++S +G        E  +++   +G   +K+   
Sbjct: 771 VIGMQTTDRNGELVGAVQVFDGEEIMLISDQGTMVRTRVDEVSLLSRNTQGVRLIKLKDG 830

Query: 648 EKMKLVVKVTG 658
           E+M+ + ++  
Sbjct: 831 ERMQGIERIEE 841


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 408/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 A-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++K+
Sbjct: 591 DDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 15/209 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +V +     G+ + ++ ++   +   + ++  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY-KDGGISDVICFKICEGLTWIDS 714
           VRL +  K       +C    E     D 
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDE 822


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/802 (32%), Positives = 410/802 (51%), Gaps = 74/802 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I++ +I+I++L+EYI GPDFPT  + +  R+ I+++Y  GRG   +RA
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAM-ISGRKGIIDAYHTGRGKVYMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ + ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                +++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S  +    I  E+  VKE F+       RRT   E++ A      + +I +
Sbjct: 484 IAELMYILSSSDRLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDLEDLITQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      +A   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G+ I  ++ L  N+ I        Y     + + ++ G   
Sbjct: 596 GRMYWLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID------- 676
               ++       G   + +   + +  V    GD  + +     K++ F          
Sbjct: 656 KTPLTDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEG 715

Query: 677 ----QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                +  M R   GVR     +G     +     +G   +      Y +          
Sbjct: 716 NAKGGVRGMGRTAAGVRGIKLAEGDKVISLIVPHNDGD-VLTVTENGYGKRTELAEYPAK 774

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G  + +
Sbjct: 775 SRATQGVVSIKVSERNGSVVGA 796



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/481 (13%), Positives = 149/481 (30%), Gaps = 77/481 (16%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN--- 342
           I EL  A+    + +    +  ++  ++    R+  P      +                
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 343 --MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
              +      + +   +          + + +      ++  ++   +IL+        I
Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHE-KILEEYKALLDEI 484

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVD---------AILNLRLRSLRKLEEYQIKSEL 451
            E++ I+ + D+   V+     L + Q +         A  ++ L  L   E+  +    
Sbjct: 485 AELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544

Query: 452 DNLLAEKEKIDSLLNSGKQQWN--------QIACE------------------------- 478
           +  +        +L+  + Q          ++  E                         
Sbjct: 545 EGYVKY-----QILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMY 599

Query: 479 -IREVKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL-- 533
            ++  +   +  T  G+        E +    A L      ++    + +  G ++    
Sbjct: 600 WLKVYQLPLASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGTVKKTPL 659

Query: 534 ----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA---YTLPAGNLLSG--- 583
               +  S  + A++ +EGDSL           I+L S  GK    Y  P  +       
Sbjct: 660 TDFSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKG 719

Query: 584 --RGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-- 637
             RG G     +  I L     +++  V  +   +L V+  G     E +E  A +R   
Sbjct: 720 GVRGMGRTAAGVRGIKLAEGDKVISLIVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQ 779

Query: 638 GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           G   +KVS      +  +    GD   ++     L+   + ++  + R  +GV L    +
Sbjct: 780 GVVSIKVSERNGSVVGAIQAEDGDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTIE 839

Query: 695 G 695
           G
Sbjct: 840 G 840


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/790 (33%), Positives = 401/790 (50%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +D+ +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDE-----RRT---EITANSADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y+    + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +           R   G +  K 
Sbjct: 718 ATGVRGIKLAENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGSVVGA 786



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 626 EADERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L  N  +V+  +      +
Sbjct: 686 DLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAENDSVVSLIIPRGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 805 VRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 854


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/815 (33%), Positives = 421/815 (51%), Gaps = 90/815 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 8   ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHNM 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +EI +  LALID+  +SI+ L+ YI GPDFPTGGI +  R  I+E+YR GRG   VRAR 
Sbjct: 188 REIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGI-INGRAGILEAYRTGRGRIYVRARH 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES ++   V+  
Sbjct: 247 TIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++ ++F  + ++T F +NM  L  G+ P+++ L  IL+ ++ HRREV+ RR
Sbjct: 307 VKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQ-PKILNLKEILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDE+I +I+                           
Sbjct: 366 TLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDMLE 425

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 + + L+  Q  AIL LRL  L  LE  ++  E  ++L 
Sbjct: 426 RAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSILK 485

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +++ +L S ++  + I  E++ +++ +              E+  +      + +I 
Sbjct: 486 RIAELNEILASPERLLDVIREELQAIRDQYGDERK--------TEIQASHLDLTIEDLIN 537

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS  G+ ++         +      SA   K+ D ++  L A T D +LL S 
Sbjct: 538 EEDMVVTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSN 597

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G+ +  L+ L+  + I        Y     +   ++KG  
Sbjct: 598 RGKVYWLKVYEMPNASRGSRGKPLINLLPLDEGEAINAILPVREYREDSYIFFATAKGTV 657

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +  ++++      +G DH  ++  N K + F    +  M 
Sbjct: 658 KRTSLEQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAMG 717

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLT-----------------------WIDSAGRS 718
           R  +GVR    + G  ++VI   I + LT                        + ++   
Sbjct: 718 RTARGVRGMRLQGG--AEVISLIIPQSLTIDAETDDDAEERPVETVGEDQVYILTASENG 775

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +        L  RGG G +  +   R+G  +++
Sbjct: 776 YGKRTRLDEFPLRGRGGQGVIAMQTSQRNGALVAA 810


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/815 (47%), Positives = 516/815 (63%), Gaps = 77/815 (9%)

Query: 10  NTLVEENVKAV-----SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + L+++  +        LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM E+
Sbjct: 2   SDLIDDGAEPATEFAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD
Sbjct: 62  RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTEARMT VAE +L G++E+AVD+RD Y+    EP+V P+ FPNLLANG+SGIA
Sbjct: 122 NPAASRYTEARMTAVAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGSSGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I ++YR
Sbjct: 182 VGMATNIPPHNISELVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIAQAYR 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR+R +W VE++GRG W IVVTEIPYQVQKS+L+EK+AE+I  K++P+L DIRDE
Sbjct: 242 TGRGAFRLRCKWEVEDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILADIRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA+DVR+VL P+++++DP++LM  ++  SD+E RF LNMNVL  G  P+V  L  +L+ +
Sbjct: 302 SADDVRMVLEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAF 361

Query: 365 LAHRREVLFRRSSF-------RMQAIDRRVEILKGLLIAYLNI---DEIIAIIRNED--- 411
           L  RREVL RRS         R++ +   +     L      I   D+    +  ED   
Sbjct: 362 LDFRREVLERRSRHRMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVALMYEDWST 421

Query: 412 -----------------------------------------------KPKPVMVS----R 420
                                                           P+ V  S     
Sbjct: 422 PHQASLSRAMTEADYRSPLEGVDIAQLVLIADPEAEAMGVLAESTAATPREVPHSYAGRE 481

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L++ Q +AILN+RLRSLR+LEE  +  E D L+ E+  ++ LL     QW+ I+ ++R
Sbjct: 482 NGLSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDAISEQLR 541

Query: 481 EVKEIFS-----KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           +VK+ F         ++G RRT F E    ++  L +AMI++EPITVV S  GWIR++  
Sbjct: 542 QVKKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPL-EAMIDREPITVVCSKMGWIRAMSG 600

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H      L FK+GD  +   HA TTDR+L+  T+G+ YTL A NL  GRG GE ++L++D
Sbjct: 601 HIDLSRELKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPGGRGMGEPLRLMVD 660

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L +  +IV  F++    KLLV SS G+ F+V E E++A TR GK  L V  + + K+  K
Sbjct: 661 LPNEAEIVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRDDVRAKVCTK 720

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           V GDHVA VGENRK+LIF++D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W D A
Sbjct: 721 VEGDHVACVGENRKVLIFALDELPEMGRGKGVRLQKYKDGGLSDATTFALADGLSWHDPA 780

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           GR   RSE DL  W GKR   G + P+GFPR  +F
Sbjct: 781 GR--TRSETDLAEWTGKRASAGRMAPRGFPRDNRF 813


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/816 (33%), Positives = 412/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 805 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 862

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 863 IDEIEESELPEGEEALVEND 882


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/794 (33%), Positives = 410/794 (51%), Gaps = 65/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  V++   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +
Sbjct: 4   IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PLI GQGNFG+IDGDS AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VDF   Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP
Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A +ALID+P +SI  L+ +I GPDFPT GI+  +R  I E+Y  GRG   +
Sbjct: 184 PHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGAR-GIQEAYLTGRGRIFM 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RAR  VE + G G   I+VTE+PY V K+RL+EKI  L+  K+I  +  +RDES +D   
Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    RS  P++++  +++ + +++ F +NM  L  G+ PQ++ L   L+ +L HR+EV
Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEAFLRHRQEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ F ++    R  +L+GL IA  NID IIA+I+    P                  
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q  AIL +RL  L  LE+ +I  E + +
Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +     +  +L + ++    I  E  E++E +S       RRT   E+         + +
Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTP-----RRT---EIQDNHVDLRLEDL 533

Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+         RS K      SA   KE D +     A+T D +L  
Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593

Query: 567 STDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ GK Y      L  G     G+    L+ L   + I T      ++    + +V++ G
Sbjct: 594 SSRGKVYWKKVYELPQGSRVARGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVTASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
                  ++       G   L +   +++       G   + +     K++ FS   +  
Sbjct: 654 VVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFSERDVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           + R  +GV+           VI   I    T + +    Y +        L  RGG G +
Sbjct: 714 VGRTARGVKGMELPSEHR--VIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGRGII 771

Query: 740 VPKGFPRSGKFLSS 753
             +  PR+G+ + +
Sbjct: 772 SIRTTPRNGEVVGA 785



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 15/207 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E        L     EK+    +++  G ++        +  S  + AL  +EGD L  A
Sbjct: 626 EEGERINTVLSIREFEKDKYIFMVTASGVVKKTSLADFSRPRSSGIIALDLREGDQLVGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK 613
                   I+L S+ GK       ++   R  G   + +  +   ++  V A +  ++  
Sbjct: 686 DLTDGVQEIMLFSSGGKVIRFSERDV---RPVGRTARGVKGMELPSEHRVIALIIAASGT 742

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRK 669
           +L  +  G       +E     R G+  + +     + E +  V     D V ++ +   
Sbjct: 743 ILTATELGYGKRTAIAEYRLQGRGGRGIISIRTTPRNGEVVGAVQVEKEDEVVLISDGGT 802

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           L+   +D I  M R  +GV+L + ++G
Sbjct: 803 LIRTPVDNISLMGRNTQGVKLINLQEG 829


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 429/757 (56%), Gaps = 31/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KS
Sbjct: 6   KILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+
Sbjct: 66  ARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAK 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++++  +L+ ++++ VDF+  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN
Sbjct: 126 MSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNPE S++ L++++ GPDFPT  II+  +ESI E+YR GRG  +VR+R
Sbjct: 186 LAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKVKVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ +G   I+VTEIPYQV K++L+E+IAEL+  KRI  + D+RDES  +   ++  
Sbjct: 245 AFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ +++  S ME  F + M  L  G+ P+V+ L  IL  ++ H+ +V+ RR
Sbjct: 305 LKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQEDVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R  IL+GL IA  NID +I++IR      + K  ++ +F LTE Q  AIL
Sbjct: 364 TKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEIQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E ++L+ +  ++  +L   +   N I  EI  +KE +S     
Sbjct: 424 DMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A+     + +I  E I + +++ G+I+          K     +SAL 
Sbjct: 481 --RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALT 535

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            +E D ++  +   T  R+L  +  G+ + L A  +  G+    G AI  L+ L+ ++ I
Sbjct: 536 TREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKI 595

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T       D    LL+ + KG     +  E     + G   + +  ++++  V    G 
Sbjct: 596 ATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELTDGK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
             V +V +    + F  + I  M R   GV+  +        V+   +C +G   +  + 
Sbjct: 656 QEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITL--SKEDFVVSMNLCSKGTDVLVVSK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +  N        R G G        ++G  + +
Sbjct: 714 NGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGA 750



 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    ++ + +G ++  K           L A+  ++ D L    
Sbjct: 591 ADEKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVE 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +LL++ +G +      ++         ++  I L+    +V+  +      +L
Sbjct: 651 LTDGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKG-ITLSKEDFVVSMNLCSKGTDVL 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           VVS  G        E  +  R GK     +  EK   +V        D + ++  +  L+
Sbjct: 710 VVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLI 769

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
              +++I    R   GV+L    D   +  +    I E
Sbjct: 770 RIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807



 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +  + + ++  +A +   VK+   +      +        R D   +   + 
Sbjct: 593 EKIATLIPIDGNDENEYLLLATKKGIVKKTKREEFKNINKSGLIAIGLRDDDELIGVELT 652

Query: 516 EKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   ++++  G         IR +   ++ +  +   + D +           +L++S
Sbjct: 653 DGKQEVLLVTKEGMSIRFDENDIRYMGRTAMGVKGITLSKEDFVVSMNLCSKGTDVLVVS 712

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G           S    G+ I+          IV A + +   ++++++S G    + 
Sbjct: 713 KNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTIVGADMVNEDDEIMIINSDGVLIRIR 772

Query: 628 ESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            +E  +      G   +K + E  +  + K+  + 
Sbjct: 773 VNEISLFGRVTSGVKLMKTNDEVNVVSIAKINIEE 807


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 408/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 A-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++K+
Sbjct: 591 DDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 16/206 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   + ++  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEVT 819


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/759 (36%), Positives = 443/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V  V  D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 709 QAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/759 (36%), Positives = 443/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIQALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V  V  D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 709 QAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 416/756 (55%), Gaps = 30/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ V++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     FKKS
Sbjct: 8   NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  IL+ + +D +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H 
Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+  NPE++ ++L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+
Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IV+ EIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++  
Sbjct: 247 SDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ ++ RR
Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           +++ ++  + R  IL+GL IA  ++DE+IA+IR        +  ++  +SL+E Q  AIL
Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E   L+    ++ ++L   ++    I  E+ E+KE F+     
Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELIEIKERFND---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    V+   +    + +I  E I + +++ G+I+          K     +  + 
Sbjct: 482 -TRRTEI--VTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  +   T D IL  S  GK Y      +        G  I  L+++   + I
Sbjct: 539 TNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVEKGEWI 598

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L   +  G +     S+       G   L +  E+++  V    G+
Sbjct: 599 NAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELMAVRLTNGE 658

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAG 716
             + +  +   L+ F+   + EM R   GV+  +  +  I  V+  +I E     +    
Sbjct: 659 KQIIIGTKKGMLIRFAETDVREMGRTAAGVKGITLSEDDI--VVGMEILEPDANVLIVTE 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           R Y +   +    +  RGG G    K    +G  ++
Sbjct: 717 RGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPLVT 752



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 16/222 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E      A +  +  ++       +  G  +           +  L AL  ++ D L 
Sbjct: 591 EVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDEDELM 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +   +I++ +  G        ++         ++  I L+ +  +V   + +   
Sbjct: 651 AVRLTNGEKQIIIGTKKGMLIRFAETDVREMGRTAAGVKG-ITLSEDDIVVGMEILEPDA 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG----DHVAVVGE 666
            +L+V+ +G   +  E E    TR GK     K++      + VK T     + + ++  
Sbjct: 710 NVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPLVTVKATNAEAEEDLMIITG 769

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  ++  ++  I    R  +GVRL     G    V    + E
Sbjct: 770 SGVIIRMAVSDISTTGRVTQGVRLIRL--GDEEHVATVALVE 809


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 405/758 (53%), Gaps = 33/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++ M E+G      +KK
Sbjct: 19  ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE 
Sbjct: 79  SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE IL  +D++ VDF   ++E   EPVV P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  +A+IDNPEI   +LL Y+ GPDFPT G  +  +E I E+Y  GRG  R+RA
Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAG-FIYGKEGIKEAYLTGRGSIRMRA 257

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + +   G   I+VTEIPY V K+RLIE IA+L+  K+I  + D+RDES  D   ++ 
Sbjct: 258 KAEIVDE-NGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++ + ++++  +F  + ME+ F +N   L     P  + L   +  ++ HR+EV+ R
Sbjct: 317 ELKKAANANVILNQLFKHTQMESTFGVNNIALVDN-TPMTLSLKETIGYFIKHRQEVVTR 375

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F ++    R  IL GLLIA  NID+ + IIR   N D+ K  ++ ++ L++ Q  AI
Sbjct: 376 RSQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSRAI 435

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  +I  E  +L+ E   ++ +L S +   + I  E+ ++K  +     
Sbjct: 436 LDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDE-- 493

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E   +    + + +I  E + V ISN G+I+          +   V +  +
Sbjct: 494 ---RRTKIVE---SAGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGM 547

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLNHNQ 600
             KE D +     A T D IL  S  GK Y+L    +    S +  G+AI  LI++   +
Sbjct: 548 ETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGE 607

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +D    L++ + +G       S        G   + + S +++  V    
Sbjct: 608 AINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELISVKMTN 667

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G   V +   N K   FS  ++  M R   GV      +     VI  +I   G + +  
Sbjct: 668 GSQEVLIATRNGKCNRFSESEVRTMGRPAMGVIGIRLTEN--DKVIAMEIVSPGQSVLTI 725

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +           RGG G +  K   R+G  ++
Sbjct: 726 CENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVA 763



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E   A  A +     + +   V+ +  G I+           S  + A+  + GD L  
Sbjct: 603 IEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELIS 662

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFVYDST 611
               + +  +L+ + +GK        +   R  G     +I   L  N  ++   +    
Sbjct: 663 VKMTNGSQEVLIATRNGKCNRFSESEV---RTMGRPAMGVIGIRLTENDKVIAMEIVSPG 719

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGEN 667
             +L +   G        E  A+ R G+  +     + +   + ++  +  D + +  + 
Sbjct: 720 QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVAVISVMPDDQIVIASKE 779

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             +   ++  IPE+ R  +GVR+   +       +   + E
Sbjct: 780 GMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSE 820


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   K+ D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVEEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G        E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +G    G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDEDLDAIDGS 854


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/759 (36%), Positives = 445/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++   +EP   P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++E+L E++ GPDFPT   ++  +  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLLKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM  +F  +D+E+ + +N NV+ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  +++R+ +L+GLLIA+LN+DE+I IIR ED PKPV++  F 
Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPVLMETFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q D IL+ RLR L +LEE +I+ E D L  E+EK+ +LL+S  +    +  EI E 
Sbjct: 416 LTDVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLSSEAKLKKLVRKEILED 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AEKY------GDDRRSPIVARAEAKALSETELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLTAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + +   ++ S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLEDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGSSL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+     +DL  + G+RG  G+ +P+GF R  + L
Sbjct: 709 QAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 417/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG+IDGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                      +   ++    + +++ E + V +++ G+I+          K     +  
Sbjct: 482 K--------TSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G+   ++G      + F    I  M R  KGV   S ++    +V+   +       +  
Sbjct: 654 GEREIIIGTARGYAIRFDEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPNSEILVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  +     L  R G G +  +   ++GK +S
Sbjct: 712 TENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFRSI-----KRNGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++ +G       
Sbjct: 675 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDL 722

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ S+I    R 
Sbjct: 723 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRD 782

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 783 TRGVTLMKLDDGDRVVSTARIENEE 807


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/802 (33%), Positives = 415/802 (51%), Gaps = 74/802 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR+   P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS----IDQ-- 677
                +       G   + +  ++ +  V    G+  + +  ++ K++ F+     D+  
Sbjct: 656 KTSLDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEG 715

Query: 678 -----IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                +  M R   GVR     +G     +     +G   +      Y +          
Sbjct: 716 NTKGGVRPMGRTAAGVRGIKLVEGDQVVSLIVPKNDGD-ILTVTENGYGKRTTLDEYPAK 774

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G  + +
Sbjct: 775 SRATQGVVSIKVSERNGSVVGA 796



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 23/246 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L A++ ++ D+L   
Sbjct: 625 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIAVNLRDDDALIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL--IDLNHNQDIVT 604
                   I+L S  GK        +           R  G     +  I L     +V+
Sbjct: 685 EITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTKGGVRPMGRTAAGVRGIKLVEGDQVVS 744

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDH 660
             V  +   +L V+  G        E  A +R   G   +KVS      +  V    GD 
Sbjct: 745 LIVPKNDGDILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSERNGSVVGAVQVTEGDE 804

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             ++     L+   + ++ ++ R  +GV L    +G    V+  +  + +   +      
Sbjct: 805 FMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQRIDEIEESELPEGEE 862

Query: 720 NRSEND 725
              END
Sbjct: 863 ALIEND 868


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/779 (32%), Positives = 400/779 (51%), Gaps = 58/779 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM++MG D+   +KKSAR+V
Sbjct: 11  VNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARVV 70

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE RM Q+
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQL 130

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L  ++++ V F   Y+E   EP V P+KFPNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 131 THELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGEI 190

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI NP +S E+LLE + GPDFPTGG  +  R+ I++ Y  GRG  ++RA+  VE
Sbjct: 191 IDAIIALIHNPALSYEELLELVPGPDFPTGG-TIYGRQGIIDGYATGRGVIQIRAKAHVE 249

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
              +     IVVTEIPYQV K+RLI  IAEL+  K+I  + D+RDES  D   ++    +
Sbjct: 250 NSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLKK 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++L+  ++  + M+T F +NM  +     P++M L  ++  ++ HRRE++ +R+ F
Sbjct: 310 DENAEVLLNQLYKHTQMQTSFGINMLAIV-HNRPKLMSLAEMMHYFIEHRREMVTKRTLF 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---------------- 422
            ++  + R  IL+GL IA   +D +I +IR    P    +                    
Sbjct: 369 ELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLPR 428

Query: 423 ---------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                    L+E Q  AIL +RL+ L  LE  +I +E +++L    ++  +L S  +   
Sbjct: 429 PAGYEKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAEIMK 488

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            I  E+ E+KE F        RRT   E+         +  IE   + V +S+ G+I+  
Sbjct: 489 IIVGELTEIKERFGDK-----RRT---EIVHQTADISLEDTIEDAEMVVTVSHTGYIKRS 540

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
                   +      + +  +E D ++    A T D +L  S  G+ Y +    +   S 
Sbjct: 541 AVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEGSR 600

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              G+A+  L+++   + I               LL+ +  G        E +     G 
Sbjct: 601 TTKGKAVVNLVNVQEGEKITAILPVKDLNREDLYLLMATRNGVVKKTPLVEYLNIRTTGI 660

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             + +   +K+  V    G   V +   + K + F       M R  +GVR  + +    
Sbjct: 661 NAVNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPMGRVTRGVRGMNLE--AR 718

Query: 698 SDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +VI  ++ +    G T        + +  +        RGG G +  K   R+G  + 
Sbjct: 719 DEVIGMEVVDPTATGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRNGLVVG 777



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E  +       + +  ++   ++ +  G ++       L   +  ++A++  EGD L   
Sbjct: 615 EGEKITAILPVKDLNREDLYLLMATRNGVVKKTPLVEYLNIRTTGINAVNLDEGDKLISV 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                   + L S  GKA   P  +    R  G   + +  ++L    +++   V D T 
Sbjct: 675 ALTDGQKDVFLASRHGKAIRFPESD---ARPMGRVTRGVRGMNLEARDEVIGMEVVDPTA 731

Query: 613 K---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVG 665
               +  ++  G     +  E    +R GK  + + +  +  LVV V      + + V+ 
Sbjct: 732 TGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRNGLVVGVMQVNDENQLMVIT 791

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQ-SYKDGGISDVICFKICEGLTWIDSAG 716
           +  K+L   +     + R  +GVR+  + +   I  V      +    I+  G
Sbjct: 792 DQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAERDDEDGIEPEG 844


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/814 (32%), Positives = 408/814 (50%), Gaps = 88/814 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R++ 
Sbjct: 188 VEVIDGCLAFINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++   
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ RR+
Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------------- 416
            F ++    R  IL+ L +A  NIDE+I +I+N   P                       
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLER 425

Query: 417 -----------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ LTE Q  AIL LRL  L  LE  +I  E   LL E  
Sbjct: 426 AGTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S ++    I  E+  V++++        RRT   E++ A      + +I +E 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDVYGDE-----RRT---EITAASHDIDMEELIARED 537

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST GK
Sbjct: 538 VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGK 597

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIV 626
            Y L    L   +    G+ I  ++ L   + I      D       + + +  G     
Sbjct: 598 TYRLKVYQLPHATRTARGKPIVNILPLEDGERITAILPVDEFSPEKFIFMATGDGTVKKT 657

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ-------- 677
             ++       G   + +  ++ +  V    GD  + +  +  K++ F   +        
Sbjct: 658 PLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQ 717

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     +      +     EG   +      Y
Sbjct: 718 GKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSNEGD-ILTVTQNGY 776

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RG  G +  K   R+G  + +
Sbjct: 777 GKRTELSEYPTKGRGTQGVVSIKVSERNGPVVGA 810



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       E    + +  G ++    +         L A++ ++ DSL   
Sbjct: 625 EDGERITAILPVDEFSPEKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLRDDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLL-------------------- 593
              +    I+L S  GK         +      G+ +                       
Sbjct: 685 DITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLDENGQPEIKFKGVRPMGRTASG 744

Query: 594 ---IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
              + L  N  +V+  V  +   +L V+  G     E SE     R  +G   +KVS   
Sbjct: 745 VRGMKLAENDQVVSLIVPSNEGDILTVTQNGYGKRTELSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  V    GD + ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAED 854


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/726 (51%), Positives = 516/726 (71%), Gaps = 5/726 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ LD  + FKK 
Sbjct: 15  HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+ AA RYTEAR
Sbjct: 75  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN
Sbjct: 135 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y  GRG FR+RAR
Sbjct: 195 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDES +++R+VL P
Sbjct: 255 WEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLVLEP 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ WL HR EVL RR
Sbjct: 315 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHEVLERR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ A++RR+EIL G L  YLN+D++I IIR ED  K  +++ F LT+ Q +++LN+R
Sbjct: 375 SRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L AEK  + +LL+S KQ+W  I  E+  + + F K   LG R
Sbjct: 435 LRSLRRLEEMEIRKEHDALSAEKAALMALLDSEKQRWKTIERELTGMIKAFGK-GRLGER 493

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+T     +    ++ + + E+EP+T+++S +GW+R++K H+VDL    FKEGD+LK+A+
Sbjct: 494 RSTILSAPKPVDISVVEEV-EREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDALKLAI 552

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              TTDR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++  F  +   + L
Sbjct: 553 PCQTTDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRRL 612

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVVG+NR+ LIF +
Sbjct: 613 VASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARVCVPAEGDHVAVVGDNRRFLIFPL 672

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +Q+P M+RG GV LQ Y DGG+   + F   +GL W    G +  R   DL  W+ +R  
Sbjct: 673 EQLPVMARGLGVALQKYSDGGLRQAVVFTAADGLHW---PGTARIRQFADLQDWVSRRAA 729

Query: 736 VGSLVP 741
           VG + P
Sbjct: 730 VGKVAP 735


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/757 (37%), Positives = 449/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +VVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----VVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVERAE-AKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLPAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I EG T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             AG R+ +   +DL  + G+RG  GS +P+GF R  
Sbjct: 708 LQAGKRTLSLKGDDLEHYKGERGRRGSKLPRGFQRVD 744


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/767 (31%), Positives = 408/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ EI +A +A IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   
Sbjct: 182 PTHNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 A-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++K+
Sbjct: 591 DDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 15/209 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +V +     G+ + ++ ++   +   + ++  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY-KDGGISDVICFKICEGLTWIDS 714
           VRL +  K       +C    E     D 
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDE 822


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/777 (31%), Positives = 395/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V + +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE RMT +A  +++ +D D VDF   Y+ +  EP V PS+ PNLL NG+ G
Sbjct: 122 NDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    +DN     E ++E ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG  R+R    +EE  RGS  IV+TE+PYQV    LI  IAE +   +I  +
Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             I D+ S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + L
Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR+    D  +
Sbjct: 360 DQMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   
Sbjct: 420 TGLMDLLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRQI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VKDELSEIVEKYGD-----DRRTRII---AADGDVTDEDLIAREDVVVTITETGYAKRTR 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               RS K     +     K+ D +K      T D +L  +T G+ Y   A  L      
Sbjct: 532 TDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTKGRVYRAKAYELPEANRT 591

Query: 585 GHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++    I+    Y+    L++ +  G       ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPDEKIQSIIHIKSYEDAPYLVLATRNGLVKKSRLADFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V   + D + +V    + + F+     +  M R   GV+   +     
Sbjct: 652 INLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEALRPMGRATSGVQGMRFNQD-- 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  EG   + +    Y +           RGG G L  +  P+ G  + +
Sbjct: 710 DELLSLNVVREGTYLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYDPKRGTLVGA 766



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +     ++ +     E  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 604 QPDEKIQSIIHIKSYEDAPYLVLATRNGLVKKSRLADFDSNRSGGIVAINLRDEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSSDDDLLLVSAKGQSIRFAATD-EALRPMGRATSGVQGMRFNQDDELLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            LLV +S G A      + +A  R GK  L +  + K    +  V+    D +  +    
Sbjct: 723 YLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYDPKRGTLVGAVIVDDDDELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +  Q+ +  R  KGVRL +  +G     I     E
Sbjct: 783 GVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAIARNADE 822


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/794 (33%), Positives = 418/794 (52%), Gaps = 67/794 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVVA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S  +    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 NQIGELIRILSSAVRLMEVIREELEVIRAEYGD-----VRRT---EILDARLDLTLGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK Y L    +   S    G  +  L+ L+ ++ I T      Y     + + ++KG 
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGT 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  V +  +  K+  F    +  M
Sbjct: 656 VKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM 715

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R Y +          KRGG G +
Sbjct: 716 GRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVI 773

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 774 AMVSNDRNGRLVGA 787



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 79/212 (37%), Gaps = 13/212 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +        L      +     + + +G ++        +  SV L AL   EGD L  A
Sbjct: 627 DSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRSVGLIALELDEGDVLISA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 687 AITDGEREVMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 745

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S ++    +  V  + G+ + ++ +   L
Sbjct: 746 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV 700
           +   + ++  + R  +GV L    KD  +  +
Sbjct: 806 VRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGL 837


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/790 (32%), Positives = 397/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------------------- 415
            R  +L+GL +A  NIDE IAII+    P         KP                    
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAA 418

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + +S G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFIFMATSLGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  T + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 636 DKFIFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + ++ EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 418/758 (55%), Gaps = 32/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     +K
Sbjct: 5   KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KS  +VGEV+GK HPHGD +VYD+LVRLAQ F  R  LI G GNFG++DGD  AA RYTE
Sbjct: 65  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A IDNP IS+++L++YI GPDFPTGGII+  R+ I E+Y  GRG   VR
Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE   G   IV+TEIPY V K++LIEKIAEL+  K I  + D+RDES  +   ++
Sbjct: 244 AKAEIEEHH-GKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++P +++  ++M + M+  F   M  L  G  P+++ L  I+++++ H+ +V+ 
Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  +IDE+I IIR+       K  ++ +F L+E Q  A
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  LE  +++ EL  L+ + +++  +L   ++    I  E+ E+K+ ++   
Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                      +   ++    + +++ E + V +++ G+I+          K     +  
Sbjct: 482 K--------TSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  LI +   +
Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593

Query: 601 DIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +         +    +++ + KG        E  +  R G   + +   +++  V    
Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKGIIKKTSIEEFRSIKRNGIIAITLEESDELINVKLTN 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G+   ++G      + F+   I  M R  KGV   S ++    +V+   +       +  
Sbjct: 654 GEREIIIGTARGYAIRFNEKDIRPMGRVAKGVIAISLRED--DEVVEMDLVHPNSEILVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  +     L  R G G +  +   ++GK +S
Sbjct: 712 TENGFGKRTDLEEYRLQTRAGKGIIAIRLSEKTGKLVS 749



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E+  S+     ++   IA  + E  E+ +     G R               ++     
Sbjct: 624 IEEFRSI-----KRNGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKD---- 674

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                       IR +   +  + A+  +E D +      H    IL+++ +G       
Sbjct: 675 ------------IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEILVVTENGFGKRTDL 722

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636
                    G+ I  +        +V+    +   + +++S+ G    ++ S+I    R 
Sbjct: 723 EEYRLQTRAGKGIIAIRLSEKTGKLVSIRSVNPEDEFMIISANGILIRMKVSDISKMHRD 782

Query: 637 -KGKTFLKVSSEEKMKLVVKVTGDH 660
            +G T +K+   +++    ++  + 
Sbjct: 783 TRGVTLMKLDDGDRVVSTARIENEE 807


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/800 (32%), Positives = 406/800 (50%), Gaps = 79/800 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YLAYA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARI
Sbjct: 10  PVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E
Sbjct: 130 IAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLRE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+ NP+ ++++L+E I  PDFPT GI +     + E YR GRG   +RA+   
Sbjct: 190 VVDGCLHLLHNPDATVDELIELIPAPDFPTAGI-IYGISGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ RG    I+V E+PYQV K  L+E+IAEL+  KRI  + DIRDES +    V+    
Sbjct: 249 EDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420
           F ++    R  IL+GL +A  NIDE IAII+    P   K  ++ R              
Sbjct: 368 FDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRA 427

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L++ Q   IL +RL+ L  LE+ +I  E   
Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+   +  +L   ++    I  E+  ++  F      G  R +  E +  +  T  + 
Sbjct: 488 VMAQIADLLDILARPERITAIIVEELTLIRAEF------GDERRSQIEHNATELDT--ED 539

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +S+ G+         R+ K       A   KE D +     A+T D IL 
Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G  I  +  L+  + I        +D    + + +SK
Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMSTSK 659

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       +E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGW 729
            M R  +GVR  + ++G     +     E           + + +    Y +        
Sbjct: 720 PMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISEYT 779

Query: 730 LGKRGGVGSLVPKGFPRSGK 749
              RG  G +  +   R+GK
Sbjct: 780 RHGRGTKGMIAIQTSERNGK 799



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 636 EKINVILPVKQFDEQHFVFMSTSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 695

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 696 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 754

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + +     + + +   +    D + +
Sbjct: 755 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAAEDEIML 814

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 815 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 847


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/751 (34%), Positives = 395/751 (52%), Gaps = 31/751 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
                +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VG
Sbjct: 76  EFGKEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVG 135

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A
Sbjct: 136 EVIGKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPA 195

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAVGMAT+I  HN+ E  
Sbjct: 196 MELLRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAI 255

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA   LID+P+ ++++L++ + GPDFPTG +I+   E I +SY  GRG   VRA+  VE 
Sbjct: 256 EATCYLIDHPDATVDELMQIMPGPDFPTGALIM-GTEGIRQSYETGRGSITVRAKAHVES 314

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   +V TEIPY V K  L EKIA L+  KRI  + D+RDES +    ++    + +
Sbjct: 315 TKTGRSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGV 374

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ +++  + ++T F  N   L  G VP+ + L  +L+ ++ H+ +V+ RR+ F +
Sbjct: 375 IPQVVLNNLYKYTSLQTTFGANNLALVNG-VPKCLSLREMLQHYIDHQVDVVTRRTRFDL 433

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437
           +    R  IL+G LIA  +IDE+I+IIR+     +    ++ RF  +  Q  AIL ++LR
Sbjct: 434 KKAQARAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLR 493

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ ELD L       + LL   ++    I  E+RE+   F        RRT
Sbjct: 494 RLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGDK-----RRT 548

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGD 549
               V   +K    + +I  E + V I++ G+++          K     +S ++ KE D
Sbjct: 549 QITHV---EKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDD 605

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF- 606
            +     A T + +L  S+ GK Y L    L  G     G AI  L+     + I +   
Sbjct: 606 VIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVIS 665

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              +     L+  ++ G       +    + R G   + + + +++  V +V  GD + +
Sbjct: 666 CRAFPEDEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGDRLLGVRRVKPGDKIIM 725

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
                K ++F  DQ+    R   GVR  + K G  ++V+  +I  G           Y +
Sbjct: 726 ATTAGKAIMFCEDQVRATGRDTSGVRGITMKGG--TEVLGMEITNGSGELFVVTEHGYGK 783

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                      RGG G    +   R G   +
Sbjct: 784 RTPVAEYPEQNRGGQGVYTIQMTERKGALAA 814



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 80/213 (37%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      + +      ++   +  +  G ++     + D S      A++ K GD L   
Sbjct: 655 EDGEKIASVISCRAFPEDEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGDRLLGV 714

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D+I++ +T GKA       +    G   +    I +    +++   + + + +L
Sbjct: 715 RRVKPGDKIIMATTAGKAIMFCEDQV-RATGRDTSGVRGITMKGGTEVLGMEITNGSGEL 773

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
            VV+  G       +E     R G+    ++++  +     +KV G    + ++ EN  +
Sbjct: 774 FVVTEHGYGKRTPVAEYPEQNRGGQGVYTIQMTERKGALAAMKVVGPQHELFIITENATV 833

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +     +I +  R   GV++ S  +G     + 
Sbjct: 834 IRVKTAEISQTGRATQGVKMMSVDEGDRVCAVA 866


>gi|332529392|ref|ZP_08405353.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/820 (31%), Positives = 404/820 (49%), Gaps = 85/820 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   +    +SL   +   YL YA+S I  RA+PD RDGFKPVHRR++ AM E+  D+  
Sbjct: 2   TEFAKETLPISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGDQSVYD++VR+AQ F  R+ L+ GQGNFG++DGD AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R+ ++A   L  +D++ VDF   Y+  + EP+V P++ PNLL NG+ GIAVGMAT+
Sbjct: 122 YTEIRLAKIAHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A L ++ NP  SI++L+E I  PDFPT GI +   + + + YR GRG  
Sbjct: 182 IPPHNLNEVVDACLHVLKNPGASIDELMEIIPAPDFPTAGI-IYGMQGVKDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR   E++ +G    I+V E+PYQV K  L+E+IAEL+  K+I  +  I+DES +  
Sbjct: 241 VMRARCHFEDIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  L  G  P++  L  ++  +L HRR
Sbjct: 301 MRVVIELKRGELPEVVLNNLYKQTQLQDTFGMNMVALV-GGQPKLCNLKDLIVVFLDHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ F ++    R  +L+GL +A  NIDE I IIR    P   K  +++R      
Sbjct: 360 EVVTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKL 419

Query: 421 ------------------------------------FSLTENQVDAILNLRLRSLRKLEE 444
                                               + L+E Q   IL +RL+ L  LE+
Sbjct: 420 VREMLTRSRADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQ 479

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E  +++AE E +  +L   ++    +  E+  +K+ F + T LG RR+    V  
Sbjct: 480 DKIVAEYKDVMAEIENLLDILARPERVAAIVGEELAGIKQEFGQ-TKLGARRSV---VEH 535

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
             +    + +I  E   V +S+ G+I+S         K       A   KE D +     
Sbjct: 536 NAQDLATEDLIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFI 595

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
           A+T D IL  S  G+ Y L    +   S    G  I  +  L   + I            
Sbjct: 596 ANTHDYILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSS 655

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGE 666
           + S   + + +  G        E     + G   + + + + +       G H V +  +
Sbjct: 656 FPSDHYVFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSD 715

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT------------WID 713
             K + F  + +  M R  +GVR     DG    VI   + +  T             + 
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMMLDDG--QSVIAMLVAQDETQNDVNGEAARTSVLT 773

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    Y +           RG  G +  +   R+GK +++
Sbjct: 774 ATENGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAA 813



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 23/203 (11%)

Query: 515 IEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + +  G ++              + A+    GD L  A        ++L S 
Sbjct: 656 FPSDHYVFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSD 715

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-----------LLVV 617
            GKA      ++     +   ++ ++ L+  Q ++   V     +           +L  
Sbjct: 716 GGKAVRFDENDVRPMGRNARGVRGMM-LDDGQSVIAMLVAQDETQNDVNGEAARTSVLTA 774

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           +  G       +E   + R  K  + +   E+   VV  T     D + ++ +   L+  
Sbjct: 775 TENGYGKRTPIAEYTRHGRGTKGMIAIQQSERNGKVVAATLVHTDDEIMLITDKGVLVRT 834

Query: 674 SIDQIPEMSRGK-GVRLQSYKDG 695
            + +I EM R   GV L +  DG
Sbjct: 835 RVSEIREMGRATQGVTLIALDDG 857


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/764 (34%), Positives = 429/764 (56%), Gaps = 31/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             NT   + +K  ++   +++ +++YA+S I  RA+PD+RDG KPVHRRI++AM+++G+ 
Sbjct: 2   EDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RY LI G GNFG+IDGD AA
Sbjct: 62  SDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +++ ++++ VDF D Y+ E+ EPVV PS+FPN+L NG +GIAVGM
Sbjct: 122 AMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLG 246
           AT+IP HN+ E+ +A +ALIDNP+I+I++L+E YI GPDFPTG +++  R  I  ++  G
Sbjct: 182 ATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLL-GRSGIKSAFETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +EE+  G   I+++EIPYQV K+ L+EKIA L+  K I  + D+RDES 
Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R +  ++++  ++ L+ +++ F +NM  L  G  P+++ L  +L  +  
Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALVNG-RPELLNLLQVLSHYRD 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVM--VSRFSL 423
           H+ E++ RR+ F ++  + R  IL+GL+IA  +IDE+I+IIR+  D P+ +      F L
Sbjct: 360 HQIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNEAFDL 419

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q  A+L+++LR L  L+  ++++E + L      +  +L +  +    I  E+ E+K
Sbjct: 420 TEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIK 479

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             F        RR+   E    D   L + +I  E I V ++  G+I+            
Sbjct: 480 TKFGD-----DRRSEIVEA---DIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFNTQNR 531

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               +  +   + D++   +   T D +LL +  GK Y +   N+   S    G  +  L
Sbjct: 532 GGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNL 591

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L   + + T       D +     V+ +G    VE  E  +  + GK  + +  ++++
Sbjct: 592 LNLTEGETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDEL 651

Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    GD+  ++ G N K + F  +++  M R   GV   +  +G +  +      EG
Sbjct: 652 VGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMGRTASGVIGFNVDEGEVVGIA--TDREG 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +  +       KRG  G        ++G  +S
Sbjct: 710 QYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVS 753



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 16/198 (8%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ +G ++ ++             A+  +E D L      +  + I++  ++GKA   
Sbjct: 616 FFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDELVGVRMTNGDNEIIIGGSNGKAVRF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               +   R  G     +I  N ++ ++V          +L V+ KG     + +E    
Sbjct: 676 DENEV---RSMGRTASGVIGFNVDEGEVVGIATDREGQYILAVTEKGYGKRTDIAEYRRT 732

Query: 635 TRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K    V+  EK   +  +  V GD  A ++     ++   I  I    R   GVRL
Sbjct: 733 KRGAKGVKTVNITEKNGNLVSLRAVNGDEEALIISNEGTVIRTEISNIGIYGRSTIGVRL 792

Query: 690 QSYKD-GGISDVICFKIC 706
            +  +   +S V   +  
Sbjct: 793 INVGETDSVSQVAILQPT 810


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPGATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 408/767 (53%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++Q + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   
Sbjct: 241 MRAKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q 
Sbjct: 359 VIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 A-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++K+
Sbjct: 591 DDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 15/209 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +V +     G+ + ++ ++   +   + ++  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVRIMGRATQG 793

Query: 687 VRLQSY-KDGGISDVICFKICEGLTWIDS 714
           VRL +  K       +C    E     D 
Sbjct: 794 VRLINLEKRNDQIGSVCKVTSEEEEITDE 822


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/790 (31%), Positives = 402/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L+ NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +LAHRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLAHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IAII+    P   K  ++++                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L+  ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILSRPERITVMIGEELTAVKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D +L  S  G
Sbjct: 531 DMVVTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + +S G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
 gi|333001821|gb|EGK21387.1| DNA gyrase, A subunit [Shigella flexneri K-218]
          Length = 875

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/777 (30%), Positives = 393/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ G
Sbjct: 122 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA          + E ++  ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  +
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   
Sbjct: 420 AGLIELLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRRI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ +          RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIVDKHGD-----DRRTRII---AADGDVADEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +     + T D +L  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V   + D + +V    + + FS     +  M R   GV+   +   G 
Sbjct: 652 INLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF--NGD 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +     ++ +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSSDDDLLLVSAQGQSIRFSATD-EALRPMGRATSGVQGMRFNGDDELLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G +      +     R GK  L +        +   + V  D     +    
Sbjct: 723 YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +  Q+ +  R  KGVRL +  +G     I     E
Sbjct: 783 GVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAIARNADE 822


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/790 (32%), Positives = 410/790 (51%), Gaps = 65/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A ++L  +D+D VD+ D Y+  +  P V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 SKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A LALI +  ISI+ L+ Y+ GPDFPTG I +  R  IV++YR GRG   VRAR 
Sbjct: 188 REVVNACLALIGDAHISIDDLMRYLPGPDFPTGAI-INGRAGIVQAYRTGRGRIYVRARA 246

Query: 257 C-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + +   G   I+V EIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+  
Sbjct: 247 EVITDEKTGRDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    D+++ +++  + ++  F +NM  L  G+ P+V+ L  IL+ +L HRREV+ RR
Sbjct: 307 LRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  +L+GL IA  NID++I +++    P                      
Sbjct: 366 TLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL+LRL  L  LE  ++  E  + LAE 
Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLAEI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+ E+   F        RRT   E+  + +    + +I  E
Sbjct: 486 ADLLDILQDRERLLAVIREELEEIATEFGDE-----RRT---EIRDSQEDLTAEDLITPE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              V +S+ G+ ++         +   +  +AL  K+ D ++  L A+T D +L  +  G
Sbjct: 538 DRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFI 625
           K Y +    +        G  +  L+ L+  + + +    +       + + +++G    
Sbjct: 598 KVYWIKVYQIPVAGRSSRGRPMVNLLQLDEGERVTSILPLEEHSDDRFIFMATAQGYVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG 684
            + +   A    G   + +  ++ +       G+  V +     K   FS   +  M R 
Sbjct: 658 TDLASF-APRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAMGRA 716

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR  +  DG     +      G T +  +   Y +           RGG G +    
Sbjct: 717 SRGVRGINLADGHRMISLLVPDARG-TVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMAS 775

Query: 744 FPRSGKFLSS 753
             R+G+ + +
Sbjct: 776 SERNGRLVGA 785



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 15/207 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIAL 555
           +      + L       +    + + +G+++     S    +   +     E D L    
Sbjct: 626 DEGERVTSILPLEEHSDDRFIFMATAQGYVKKTDLASFAPRSAGLRAIVLGEDDVLVGTA 685

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCK 613
                  ++L S++GKA       +   R  G A + +  I+L     +++  V D+   
Sbjct: 686 ITDGNQDVMLFSSEGKATRFSESAV---RAMGRASRGVRGINLADGHRMISLLVPDARGT 742

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRK 669
           +L VS  G        +     R GK  + ++S E+   +   ++V +GD + ++     
Sbjct: 743 VLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGT 802

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           L+    DQ+ ++ R  +GVR+   K+G
Sbjct: 803 LVRTQCDQVSQLGRNTQGVRIIRTKEG 829


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/772 (29%), Positives = 390/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +D+D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNP+I  E L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEIE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKG-RPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIR  + P     +   RF 
Sbjct: 358 EHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPEECKRVMKLELEEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT   E+   +     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKFGD-----VRRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V     + ++ D  +    A     +L  +  G+ Y L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTSKGRAIQN 589

Query: 593 LIDLNHNQDI--------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L++++ +  +        +    +     ++  +  G                G   + +
Sbjct: 590 LLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAYSRPRTNGVNAITI 649

Query: 645 SSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G ++ +    N + + F  + +  M R   GVR       D  +  +
Sbjct: 650 AEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  +   Y +           RGG G        ++GK ++
Sbjct: 710 IVVNDPETETVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNITDKTGKLVA 761



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 78/202 (38%), Gaps = 15/202 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G ++        +  +  ++A+   EGD +      +  + +++ + +G+A  
Sbjct: 619 IVFATKNGTVKKTSLEAYSRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVY 678

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEII 632
                + +       ++ +     +  +V   V +   T  ++VVS  G       ++  
Sbjct: 679 FDENTVRTMGRTATGVRGMRLDGGDDAVVGMIVVNDPETETVMVVSETGYGKRSFVADYR 738

Query: 633 ANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  +K   +  +  VT D  + ++ ++   +  ++     M R   GV
Sbjct: 739 KTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGV 798

Query: 688 RLQSY--KDGGISDVICFKICE 707
           RL +   K+  I+ V   K  +
Sbjct: 799 RLINLSKKNDVIASVCKVKTSD 820


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/776 (30%), Positives = 391/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    +DN E   E     ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 QGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E    +     RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELAEIVEKHGDA-----RRTRIV---AADGDVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +      + D ++      T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDY 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 712 L-LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 14/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 604 QPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDYLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     +    
Sbjct: 723 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++  +  Q+ +  R  KGVRL +  +G     I     E  
Sbjct: 783 GVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEEAA 824


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/767 (31%), Positives = 405/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ EA  A IDNPEI++E+L+ ++  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PPHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGG-YIYGVSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E +G+    IV+TEIPY V K+ LI+ IA+L+  KRI  + +  DES  +   
Sbjct: 241 MRAKAEIE-IGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDLIKYFIEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + ++             + +   +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 76/191 (39%), Gaps = 14/191 (7%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G
Sbjct: 610 NNHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNG 669

Query: 571 KAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVE 627
           +A      A  ++     G     L +   ++ +    + D  T  ++VVS +G     E
Sbjct: 670 RAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVVGMICIKDLETESVMVVSEQGYGKRSE 729

Query: 628 ESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
             +     R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R
Sbjct: 730 IEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGR 789

Query: 684 GK-GVRLQSYK 693
              GVRL + +
Sbjct: 790 ATQGVRLINLE 800


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDSIDGS 854


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFEN-LEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDSIDGS 854


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/766 (31%), Positives = 399/766 (52%), Gaps = 38/766 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L        P+V+ L  +LK +LA
Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKHYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L         I  EI  + 
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAILADRNTLLRVIREEILAIS 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +        RRT              + MI +E   + ++  G+I+            
Sbjct: 486 EKYGD-----DRRTAIG---FDAFDISMEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
               +  +   + D ++  +   T   ++  +  G+ Y L A  +        G AI  L
Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   + I        ++    L++ + KG        +     + G   + +  ++++
Sbjct: 598 LQLMPGERITAVIPISKFEEGQYLMMATRKGLVKKTPIQDYANVRKIGLAAISLRDDDEL 657

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CE 707
             V        + +V +  + + F    +    R   GVR  +  DG   +V+  ++  +
Sbjct: 658 IEVKATDDKKDIILVTKYGQCIRFKESDVRSTGRVSMGVRGINLLDG--DEVVAMQLNTQ 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 716 GYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIGA 761



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 18/230 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +  +  E+    ++ + +G ++      
Sbjct: 578 KAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGQYLMMATRKGLVKKTPIQD 637

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  ++ D L           I+L++  G+       ++ S       ++
Sbjct: 638 YANVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRSTGRVSMGVR 697

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L+ ++ +V   +      LLVVS  G       SE     R GK        EK  
Sbjct: 698 GINLLDGDE-VVAMQLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTG 756

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            V+        + + ++     ++      I  + R   GV+L +  DG 
Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGV 806


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/765 (34%), Positives = 406/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L+S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEDEYKELLALIEDLKAILSSEARQRQIIKDELDDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+ Y L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   + + 
Sbjct: 593 PLAVGESVTTMIDLERVQEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDHLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEG 708
            V    G    ++G      + FS + +  M R   GVR      G  +         E 
Sbjct: 653 SVNVTNGSQDILLGTKLGIAIRFSENDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNADES 712

Query: 709 LTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +   +   + +  +     L KRGG GS   K   ++G  +S
Sbjct: 713 EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVS 757



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 593 PLAVGESVTTMIDLERVQEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L      + +  ILL +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 649 DHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLMKRAAHGVRG-IKLNAGDVVVGAGVL 707

Query: 609 DST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
           ++     ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 708 NADESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVSVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICF 703
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G     I  
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEGDKVASIAV 811


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/814 (31%), Positives = 399/814 (49%), Gaps = 86/814 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L ++ NPE +I++L+E I  PDFPT GI +   + + E YR GRG   +RA+   
Sbjct: 190 VISACLHVLHNPECTIDELIEIIPAPDFPTAGI-IYGVQGVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQ-PRLLNLKQMLEYFLQHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  +L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVREMLARA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 ETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +++E   +  LL   ++    I  E++EV+  F  +     RR+              + 
Sbjct: 488 VMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFI---EMNATELFTED 544

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +SN G+         R+ K       A   K  D +     A+T D IL 
Sbjct: 545 LITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDIILC 604

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G+ I  +  L   + I        Y     + + +S 
Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGYQDDHYVFMATSL 664

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + ++  + +       G H V +  +  K + F  + + 
Sbjct: 665 GTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRFDENDVR 724

Query: 680 EMSR-GKGVRLQSYKDGGISDVICF---------------KICEGL----TWIDSAGRSY 719
            M R  +GVR  +  DG    VI                     G     + + +    Y
Sbjct: 725 PMGRTARGVRGMNLGDGH--QVIAMLVAPAEAAEGAEAAVVDANGAAIPSSVLTATENGY 782

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RG  G +  +   R+GK +++
Sbjct: 783 GKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAA 816



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 75/243 (30%), Gaps = 31/243 (12%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
                 L     + +    + ++ G ++  +           + A+   E D L  A   
Sbjct: 641 EKITVILPIKGYQDDHYVFMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAIT 700

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------ 611
                ++L S  GKA      ++         ++ + +L     ++   V  +       
Sbjct: 701 DGQHDVMLFSDAGKAVRFDENDVRPMGRTARGVRGM-NLGDGHQVIAMLVAPAEAAEGAE 759

Query: 612 ------------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                         +L  +  G       +E   + R  K  + + + E+   VV     
Sbjct: 760 AAVVDANGAAIPSSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAAALV 819

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICEGLTWID 713
              D + ++     L+   + +I EM R   GV L +  +G  +S +      +     D
Sbjct: 820 SPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEGTRLSGLQRIAESDSDDETD 879

Query: 714 SAG 716
             G
Sbjct: 880 EEG 882


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 406/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   + +    Y +           R   G +  K 
Sbjct: 718 TTGVRGIRLGEGDKVVSLIVPRGEGA-ILTATQNGYGKRTAVAEYPTKSRATKGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/792 (33%), Positives = 414/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALIDNP+++I++L+E+I GPDFPT GI +  R  IVE+YR GRG   +RA
Sbjct: 186 NLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGI-INGRAGIVEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E   +     I++TE+PYQ+ K+RLIEKIAEL+  KR+  + ++RDES ++   V+
Sbjct: 245 RHEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ ++F  + +ET F +NM  L  G  P+ + L  +L  ++ HRREV+ 
Sbjct: 305 IELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGE-PKTLNLKQLLDAFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NIDEII +I+                         
Sbjct: 364 RRTIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL+LRL  L  LE  ++++E   +L 
Sbjct: 424 LERAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILD 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +   +  +L   ++    I  E+  +   F        RRT   E++ + +      +I+
Sbjct: 484 KIADLLDILGDPERLLQVIREELEAIVTEFGDE-----RRT---EITSSRRDLTIADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS+ G+ ++         +      +A   K+ D ++  L A++ D IL  S 
Sbjct: 536 EEDLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT---AFVYDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G  +  ++ L+  + I T      Y     +L+ +S G  
Sbjct: 596 RGKVYWLRVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   + +       GD  V +     K + F+ + +  MS
Sbjct: 656 KKTPLPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMS 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR      G    V      +G   + ++   Y +           RG  G +  
Sbjct: 716 RTARGVRGIKMPQGHHV-VSLIIPQDGGVILTASENGYGKRTAIDEFPTYSRGSQGVIAM 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  +++
Sbjct: 775 QCSERNGNLVTA 786



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 13/233 (5%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++   ++ ++ G ++        +  S  L AL   EGD+L  A        ++L ST
Sbjct: 640 YPEDQFVLMATSAGVVKKTPLPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFST 699

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA       +         ++  I +     +V+  +      +L  S  G       
Sbjct: 700 AGKAVRFNEEAVRPMSRTARGVRG-IKMPQGHHVVSLIIPQDGGVILTASENGYGKRTAI 758

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E    +R  +  + +     +   +  +    GD + ++ +   L+    D++  +SR 
Sbjct: 759 DEFPTYSRGSQGVIAMQCSERNGNLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRN 818

Query: 684 GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            +GVRL          V   +I E     +DS G      E+   G  G+  G
Sbjct: 819 TQGVRLIKLSQEDERLVGVERIAETDDEELDSEGNPIVADESPEEGQEGESAG 871


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/758 (34%), Positives = 418/758 (55%), Gaps = 29/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  V  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++A  E G+      
Sbjct: 4   SQTKVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA +VG V+G+ HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS AA RYT
Sbjct: 64  RKSANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T +A  +L+ +++D VDFR  Y++   EPVV P++ PNLL NG++GIAVGMATSIP
Sbjct: 124 EARLTALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ E  + L++NPE ++++L+ YI GPDFPT G+I+ +R  + ++YR GRG   V
Sbjct: 184 PHNLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTR-GMRQAYRTGRGSVTV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +EE   G   IVVTEIPY V K++L+E+IAEL+  K+I  + D+RDES      +
Sbjct: 243 RGRCEIEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R + P +++  ++  + ++  F + +  L  G  PQV+ L  +L ++L HRREV+
Sbjct: 303 VMDIRRDISPSVILNKLYRNTQLQDNFGITLLALVDGE-PQVLNLKEMLNQYLNHRREVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F ++    R+ I++GL IA  N+DE++ IIRN       +  ++SRF LTE Q +
Sbjct: 362 RRRTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSRFDLTEMQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE  +++ E   L+     ++ +L   ++    I  ++ ++K  F   
Sbjct: 422 AIVEMRLRQLTGLERNKLEEEYRELVGRISDLEDILRRPERVQAIIKEDLIDIKTRFGDK 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+   D +   + +IE+E I V +SNRG+I+          +     ++
Sbjct: 482 -----RRT---EIREEDASFEAEDLIEEESIVVTLSNRGYIKRQPLSTYRSQRRGGKGVT 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
               +  D         T   +L  +  G+ Y+L A  +   S +  G  +   + LN  
Sbjct: 534 GTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEASRQSRGTPVINFLRLNPG 593

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T      +D+   L++ +  G    V   E     R G   + + +++++  V K+
Sbjct: 594 EKVNTVISVNRFDAGQHLVMATRTGMVKKVPIDEFRQIRRSGIIAINLRNQDELVGVQKI 653

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             GD + +V      ++F    +  M RG  GVR  S + G    +   K  EG   +  
Sbjct: 654 YKGDRLVLVTGRGYSIVFDEGDVRVMGRGAAGVRGISLEQGD-KVIDIDKYKEGADMLLV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             R Y +  +     L KRGG G    +   ++G+ + 
Sbjct: 713 TERGYGKRTSLQELRLQKRGGKGLKTIQISEKTGELVG 750


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/790 (32%), Positives = 397/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++N E +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------------------- 415
            R  +L+GL +A  NIDE IAII+    P         KP                    
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASA 418

Query: 416 -----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E   ++A+ 
Sbjct: 419 GGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDA------RRSRIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + +S G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSADKFVFMATSLGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  ++ K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  T + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   EGD L  A        ++L S  GK
Sbjct: 636 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPIAE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/754 (50%), Positives = 507/754 (67%), Gaps = 9/754 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M +D   N        +       AL ERYL YALSTI  R++PD+RDG KPVHRR++ A
Sbjct: 1   MAIDLRDNPPV----GILDAPFDSALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWA 56

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + LD  A +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F  RYPL+ GQGNFGN
Sbjct: 57  MRLLKLDPAAGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGN 116

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAAYRYTEAR+TQVA  ++ G+DEDAV +R TYN E+ EP +FP  FPNLLANG 
Sbjct: 117 IDGDNAAAYRYTEARLTQVAIDLMDGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP HN  E+ +AA+ ++D+P+   + +L  + GPDFPTGGI+V++   + 
Sbjct: 177 SGIAVGMATSIPPHNAAELLDAAIHVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILR 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ESY  GRGGFRVRARW +E    G W IVV+EIPY V K +LIE+IA LI  K++P+L D
Sbjct: 237 ESYTTGRGGFRVRARWEIEREKGGGWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES   VRIVL P++R++DP +LM+ +F  SD+ETR  LN+NVL   R P+VM L   
Sbjct: 297 VRDESDAQVRIVLEPRSRTVDPQVLMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L  W+ H+  VL RRS  R+  I  R+E+L G L+AYLN+D +I IIR ED+PK VM+  
Sbjct: 357 LAAWVEHQFVVLRRRSEHRLGKIADRIELLDGYLVAYLNLDRVIEIIRTEDEPKAVMIEE 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F LT+ Q +AILN+RLRSLR+LEE++I+ E D L  E+E++  LL S ++Q  ++  ++ 
Sbjct: 417 FRLTDRQAEAILNMRLRSLRRLEEFEIRGERDKLDKEREQLTQLLGSEQRQRTRMKKDLG 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++++ +   T LG RRT   E +   +    +AMIE+EPITV++S RGWIR++K H    
Sbjct: 477 KIRDRYGLETILGARRT-LIEEAAPTRDIPLEAMIEREPITVILSQRGWIRAMKGHVDLA 535

Query: 541 SA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           SA    FKEGD    A HA TTD++LL + +G+ +TL A  L  GRG GE ++ +IDL+ 
Sbjct: 536 SAETAKFKEGDGPAFAFHAQTTDKLLLAAANGRFFTLAADKLPGGRGFGEPVRAMIDLDG 595

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           +  IV         KLLV +S G  FIV  ++ IA TRKGKT L   +   +K+V  V  
Sbjct: 596 SIGIVGFLPAARAAKLLVAASDGRGFIVPAADTIAETRKGKTVLTPRAGASLKVVRPVGA 655

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             D+VA +G+NRKLL+F + +  E+SRG GV+LQ Y+DGG+SD   F   +GL+W     
Sbjct: 656 EDDYVAAIGDNRKLLVFPLTEFVELSRGTGVQLQRYRDGGLSDATTFVFKDGLSWPMGGE 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               R+E DL  W   RG  G + P GFPR  +F
Sbjct: 716 TGRVRTEADLSAWRTARGAAGRMPPTGFPRDNRF 749


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 402/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARIVG+VIGK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A   
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++NPE +I++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L  G+ P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IAII+    P   K  ++++                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITTMIGDELTSVKAEFGDA------RRSRIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D +L  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + +S G    
Sbjct: 591 RVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKFVFMATSLGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR    +DG     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 771 SERNGKVVAA 780



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 13/190 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + ++ G ++     +        + A+   +GD L  A        ++L S  GK
Sbjct: 636 DKFVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGK 695

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESE 630
           A      ++         ++ +  L   Q ++   V       +L  +  G       +E
Sbjct: 696 AVRFDENDVRPMGREARGVRGM-QLEDGQQVIALLVAGSEEQSVLTATENGFGKRTPITE 754

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   
Sbjct: 755 YTRHGRGTKGMIAIQTSERNGKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQ 814

Query: 686 GVRLQSYKDG 695
           GV L S  +G
Sbjct: 815 GVTLISLDEG 824


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/777 (30%), Positives = 393/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+    EP V PS+ PNLL NG+ G
Sbjct: 122 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALA----LIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA          + E ++  ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    +EE  +G   IV+TE+PYQV    LI  IAE +   +I  +
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++AH+ EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++   ++ E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   
Sbjct: 420 AGLIELLTVDEIQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRRI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ +          RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIVDKHGD-----DRRTRII---AADGDVADEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +     + T D +L  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTKGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I +      Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V   + D + +V    + + FS     +  M R   GV+   +   G 
Sbjct: 652 INLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRF--NGD 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  EG   + +    Y++        +  RGG G L  +   + G  + +
Sbjct: 710 DELLSLNVVREGTYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGA 766



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 14/229 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +     ++ +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPDERIQSVIQIKTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSSDDDLLLVSAQGQSIRFSATD-EALRPMGRATSGVQGMRFNGDDELLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G +      +     R GK  L +        +   + V  D     +    
Sbjct: 723 YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  +  Q+ +  R  KGVRL +  +G     I     E     D+A 
Sbjct: 783 GVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLLAIARNADEPDETDDNAE 831


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 399/757 (52%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL      KK
Sbjct: 4   EKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +A+ID+PEI I  L++Y+  PDFPTGGI +   E + ++Y  GRG   +RA
Sbjct: 184 NMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGI-IYGYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K+I  + DIRDES  +   ++
Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P +++  ++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I  IR        +  ++ RF LTE Q  A
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDRFGLTEVQAKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    +A  E++ S+L S  +Q   I  E+ +V E++    
Sbjct: 422 ILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASPAKQMEIIKEELLKVSEVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EMRPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQHRGGRGVAG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L   +
Sbjct: 534 AQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSARGRSLANIMELPPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++ G     +  +     R G   + +   +++       
Sbjct: 594 KIRTYINIRNFDDPHFIIMATANGIVKKTDLKQYSNPRRTGINAITIEEGDELIEARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GDH V +   +   + F   ++  M R   GV+  +  +      +        + +   
Sbjct: 654 GDHQVILAKSSGYAVRFPESEVRSMGRTAMGVKGITLDEAERCISMVTTKRNDTSLLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        + KRG  G +  K   + G  + 
Sbjct: 714 DNGYGKRSKVEDYRMTKRGARGVITIKAHEKIGNLVG 750



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 70/200 (35%), Gaps = 13/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +     ++ +  G ++              ++A+  +EGD L  A       +++L  +
Sbjct: 604 FDDPHFIIMATANGIVKKTDLKQYSNPRRTGINAITIEEGDELIEARLTDGDHQVILAKS 663

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVE 627
            G A   P   + S       ++  I L+  +  ++      +   LL V+  G     +
Sbjct: 664 SGYAVRFPESEVRSMGRTAMGVKG-ITLDEAERCISMVTTKRNDTSLLAVTDNGYGKRSK 722

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R  +  + + + EK+  +V +      D + ++  N  ++   +  I  + R
Sbjct: 723 VEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLIIITTNGIVIRQHVSDIRVLGR 782

Query: 684 GK-GVRLQSYKDGGISDVIC 702
              GVRL     G       
Sbjct: 783 NTSGVRLIRLDAGDRISATA 802


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332278618|ref|ZP_08391031.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|332754876|gb|EGJ85241.1| DNA gyrase, A subunit [Shigella flexneri 4343-70]
 gi|332756160|gb|EGJ86511.1| DNA gyrase, A subunit [Shigella flexneri 2747-71]
 gi|332766049|gb|EGJ96259.1| DNA gyrase, A subunit [Shigella flexneri 2930-71]
 gi|333001373|gb|EGK20941.1| DNA gyrase, A subunit [Shigella flexneri VA-6]
 gi|333002596|gb|EGK22156.1| DNA gyrase, A subunit [Shigella flexneri K-272]
 gi|333016644|gb|EGK35973.1| DNA gyrase, A subunit [Shigella flexneri K-304]
 gi|333016790|gb|EGK36117.1| DNA gyrase, A subunit [Shigella flexneri K-227]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 408/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE  G+ G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/802 (33%), Positives = 412/802 (51%), Gaps = 65/802 (8%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           + +  ++ +  + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM  
Sbjct: 1   MRDIGSMSDLAKGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDV 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 61  LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGI
Sbjct: 121 DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+    LA I+N +I+I++L+ YI GPDFPT  + +  R+ IV++Y
Sbjct: 181 AVGMATNIPPHNLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAAL-ISGRKGIVDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +R++  +E    G   I+VTEIPYQV K+R+IEKIAEL+  K++  +  +RD
Sbjct: 240 KTGRGKVYMRSKANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES +D   ++    R    ++++ ++F L+ ++T F +NM  L  G+ P++  L  +LK 
Sbjct: 300 ESDKDGMRIVIECKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQ-PKLFNLKEMLKC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---- 419
           ++ HRREV+ RR+ F ++    R  IL+GL +A  NIDEII +I+N   P          
Sbjct: 359 FVDHRREVVTRRTIFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVAR 418

Query: 420 ---------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                            ++ LTE Q  AIL LRL  L  LE  +
Sbjct: 419 GWDLGNVADMLERAGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEK 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E   LL E  ++  +L S ++    I  E+  V++ +        RRT   E+  A 
Sbjct: 479 ILDEYKALLDEIAELMHILASTERLMEIIRDELITVRDTYGDE-----RRT---EIGAAI 530

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +S  G+++          +      SA   K+ D ++  L A+
Sbjct: 531 HDIDIEDLITQEDVVVTLSREGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVAN 590

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T D IL  ST GKAY+L    L   S    G+ I  ++ L   + I        Y     
Sbjct: 591 THDNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKF 650

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           + + +  G        +       G   + +  ++ +  V   TG + + +  +  K++ 
Sbjct: 651 IFMATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVR 710

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           FS + +  M R   GVR            +     EG   +      Y +          
Sbjct: 711 FSEEHVRGMGRTASGVRGMKLTGEDQVVSLIVPSNEGD-ILTVTENGYGKRTKISEYPTK 769

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G  + +
Sbjct: 770 SRATQGVVSIKVSDRNGSVVGA 791



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 13/224 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L  +   ++    + +  G ++        K  +  L A++ +E DSL   
Sbjct: 631 EEGERITAILPVSEYSEDKFIFMATGDGTVKKTSLDQFAKVRANGLIAVNLREDDSLIGV 690

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ I+L S  GK       ++         ++ +  L     +V+  V  +   +
Sbjct: 691 DITTGSNEIMLFSKAGKVVRFSEEHVRGMGRTASGVRGM-KLTGEDQVVSLIVPSNEGDI 749

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G     + SE    +R   G   +KVS      +  V    GD   ++ +   L
Sbjct: 750 LTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITDAGTL 809

Query: 671 LIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWI 712
           +   + ++ ++ R  +GV L    +D  +  +      E L  +
Sbjct: 810 VRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEPEELEIL 853


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/762 (33%), Positives = 424/762 (55%), Gaps = 30/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S   + + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+++M +  L  
Sbjct: 2   SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA IVG+V+GK HPHGD +VYD+LV++AQ F  RYPL+ G GNFG+IDGDSAAA
Sbjct: 62  DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+RM +++  +L+ ++++ VD    Y+E + EP V P+++PNLL NG++GIAVGMA
Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ E+ +A + LIDN + ++E +L++I GPDFPTG  I+    S++++YR GRG
Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIM-GNSSMLQAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               RA+   EE+  G   IVVTEIPYQV K+RL+EKIAEL+  KRI  +  I DES   
Sbjct: 241 KVVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRK 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R ++PD+++  +F  S ++  F + M  L    +P+V+ L+ +L+ +L H+
Sbjct: 301 GMRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNN-IPKVLTLEQMLRLYLKHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQ 427
            EV+ RR+ F ++    R+ +++GLL A  +IDE+IAIIR+        ++ RF  +E Q
Sbjct: 360 EEVVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMERLMERFDFSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L+ LE+ +++ E  +L  + +    +L+      + I  EI E+K  + 
Sbjct: 420 AKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRTTF     + +    + MI  + +TV +++ G+I+          K     
Sbjct: 480 NE-----RRTTFL---ASYEDIDIKDMIPDDEVTVTLTHLGYIKRVGIDTYKTQKRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           ++++  ++ D +   L      +++  +  G+ Y L    +   S    G  I  ++ L 
Sbjct: 532 IASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLE 591

Query: 598 HNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + + T             +++ + KG        E   + R G   + +  ++++  V
Sbjct: 592 DGEKVNTMLSIREEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGV 651

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
               G+ ++  V  N K ++F    I  M R  +GVR  + ++G   +++   I +    
Sbjct: 652 ELTDGNCNIICVARNGKAIMFDESDIRSMGRTAQGVRAMNLEEG--DEIVSMMIADPEKD 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + R Y +        L  RGG GS   K   ++G+ + 
Sbjct: 710 VLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITEKTGRLVG 751



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
              +  + +     +         V+ + +G ++         S      A+  KE D L
Sbjct: 589 PLEDGEKVNTMLSIREEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDEL 648

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I+ ++ +GKA      ++ S     + ++ + +L    +IV+  + D  
Sbjct: 649 IGVELTDGNCNIICVARNGKAIMFDESDIRSMGRTAQGVRAM-NLEEGDEIVSMMIADPE 707

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +L++S +G       +E    TR GK      +   +   +   V    D + +V  +
Sbjct: 708 KDVLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITEKTGRLVGGKVVSNDDEIMIVNID 767

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQS 691
             L+   +  I  +SR   GVRL  
Sbjct: 768 GTLIRMEVKGISVLSRVTSGVRLMK 792


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 591 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 649

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  S+   IR        L   +  +  +  +EGD +      HA
Sbjct: 650 ELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 710 NSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV 
Sbjct: 770 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/790 (33%), Positives = 417/790 (52%), Gaps = 64/790 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  ++++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D+PEI ++++++ I GPDFPT  I +  R  I++ YR G+G   +RA
Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAI-INGRAGIIQGYRTGKGRAIIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +   G   I++TE+PYQV K+RL+E+IAEL+  K+I  +  +RDES +    V+
Sbjct: 245 RTEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    D+++ +++  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTM 423

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL LRL  L  LE+ +I  E + LL 
Sbjct: 424 LERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L S ++    I  E  E+K  F        RRT   E          + +I 
Sbjct: 484 LIRELLEILASPERLMQVIRDEFVEIKTQFGDE-----RRTEIIESQE---DLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA + K+ D +   + A T D +L  S 
Sbjct: 536 EENVVVTLSHQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + + KG  
Sbjct: 596 HGKLYWLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLDGYYVFMATKKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +  ++ +  V    G   + +  +  K++ F  +++  M 
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    ++      +     +G T + +    Y +  +     +  RGG G +  
Sbjct: 716 RTARGVRGIRIEEEQAVISLVVAHPDG-TILTATENGYGKRTSIDEYRVSGRGGQGVISI 774

Query: 742 KGFPRSGKFL 751
           +   R+GK +
Sbjct: 775 QVNERNGKVV 784



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           I+L +  GK        +         ++  I +   Q +++  V      +L  +  G 
Sbjct: 694 IMLFTDAGKVVRFDENKVRPMGRTARGVRG-IRIEEEQAVISLVVAHPDGTILTATENGY 752

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E   + R G+  + +   E+    ++ V     D   ++ +   L+ F ++++
Sbjct: 753 GKRTSIDEYRVSGRGGQGVISIQVNERNGKVVRSVQVTDADEAMLITDKGTLVRFKVNEL 812

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             + R  +GVRL +   G    V+  +  E L
Sbjct: 813 SVIGRNTQGVRLINVSSG--EKVVGMQKIEDL 842


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/815 (32%), Positives = 409/815 (50%), Gaps = 84/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI++P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R+R  +EE   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRSRAEIEEE-NGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 300 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L +A  NID IIA+I+    P                 
Sbjct: 359 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHV 418

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 419 KGMLEKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E+ EV   F        RRT     +  +     + 
Sbjct: 479 LLEIIAALLFILGSPQRLMEVIKEELEEVLANFGDE-----RRTVI---NANEVDMSLED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 531 LINEEDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 590

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L   + I        Y     +++ +S 
Sbjct: 591 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLAEGERITAILPVREYAEDKYIIMATSH 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G       +        G   + +   +++  V    G + + +     K++ F+     
Sbjct: 651 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARS 710

Query: 676 -------------DQI---PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                        +++     M R   GVR    +DG     +     EG   +      
Sbjct: 711 SETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGD-ILTVTENG 769

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +        RG  G +  K   R+G  + +
Sbjct: 770 YGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGA 804



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 30/222 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      ++   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 627 ERITAILPVREYAEDKYIIMATSHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 686

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
              + I+L S +GK          S  G        GE +  L            I L  
Sbjct: 687 DGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLED 746

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVV 654
            Q +V+  V      +L V+  G     + +E  A +R  KG   +KVS      +  V 
Sbjct: 747 GQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQ 806

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
               D + ++     L+      +  + R  +GV +    + 
Sbjct: 807 VGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED 848



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  ++G ++   +       IL ++ +G           +     + 
Sbjct: 729 LRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPAKSRGTKG 788

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  +V A       +++++S+KG       + + +  R   G T ++ + +
Sbjct: 789 VVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED 848

Query: 648 EKMKLVVKVTGDHV 661
           EK+  + ++    V
Sbjct: 849 EKVVGLQRIDEIQV 862


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/759 (36%), Positives = 441/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA +  E+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRFEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   P V  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V  V  D
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 709 QAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/790 (33%), Positives = 403/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I++E L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE   + G   I++ EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++MPL  IL+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMPLKDILEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  N+D II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELIRILESSERLMEVIREELELIRDQFGDK-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWNIFMATACGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   + +  E+++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALTEFSRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +      +     EG   +      Y +  N        R   G +  K 
Sbjct: 718 ASGVRGIKLAENDRVVSLIVPQEEGA-IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYAEGWNIFMATACGTVKKTALTEFSRPRSAGIIAVNLRDEDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D  +L S  GK          + R  G     +  I L  N  +V+  V     
Sbjct: 686 SLTNGADEAMLFSAAGKVVRFAE---TAVRAMGRTASGVRGIKLAENDRVVSLIVPQEEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            ++ V+  G       SE    +R   G   +KV+      +  V  V  D + ++ +  
Sbjct: 743 AIMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID  
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEELDGIDGT 854


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 395/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       IL+ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/763 (31%), Positives = 399/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+    + +IDN      E S+E++LE + GPDFPTG  I+  R  I E+YR GRG 
Sbjct: 187 NLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATIL-GRAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA + +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDES  + 
Sbjct: 246 IRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R ++ ++LM  +   + ++  F + M  L     P+++ L  +L+ +L H+ 
Sbjct: 306 MRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNE-PRILNLKQMLEYYLQHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GL+ A  +IDE+I IIR        K  ++ RF+L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERFALSEI 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEKKLLGVIREEIIVISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T       D     + +I  + + V ++N G+I+               
Sbjct: 485 ------GDERRTAIGYDEYD--MSAEDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 537 GIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I +      ++    L + +  G        E     + G   + +   +++  V
Sbjct: 597 MPGEKITSIIAMKEFEDDKYLFMATRNGMVKKTSLKEYENVRKNGLQAIVLRENDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
            +    + + +V +    + F    +    R   GV    + +    +VI  ++  +G  
Sbjct: 657 KRTDNTEDIFLVTKKGMCIRFHETDVRVTGRVSMGVIGMKFDED--DEVIGMQMSSQGEC 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + ++   Y +           RGG G    K   ++G  + +
Sbjct: 715 LLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGDLIGA 757



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 74/243 (30%), Gaps = 19/243 (7%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               + +     E +    + +  G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIVNLLQLMPGEKITSIIAMKEFEDDKYLFMATRNGMVKKTSLKE 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +E D L        T+ I L++  G        ++         + 
Sbjct: 634 YENVRKNGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRVTGRVSMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
            +   + + +++   +      LLV S  G        E     R GK      +   + 
Sbjct: 694 GM-KFDEDDEVIGMQMSSQGECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKI 705
           + +   +      + ++     ++  S++ I  + R   GV+L S   D GI+     K+
Sbjct: 753 DLIGAKLVDNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAVASIAKV 812

Query: 706 CEG 708
            E 
Sbjct: 813 RES 815


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/731 (50%), Positives = 511/731 (69%), Gaps = 8/731 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L  AL +RYLAYALSTI  RA+PD+RDG KPVHRR+++AMS M L+  AA +K 
Sbjct: 8   RIVDEPLGDALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VGEV+G  HPHGDQ++YD+LVR+AQ F QRY L+ GQGNFGNIDGD+AAA RYTE R
Sbjct: 68  AKVVGEVMGNFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T  A +IL G++EDAVDFR TY+++D+EPVV P  FPNLLANG  GIAVGMATS+P HN
Sbjct: 128 LTLAAMMILDGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V E+ +A   L+ N   +  +L+E+I GPDFPTGG+ VESR+SI E+Y  GRG  RVRAR
Sbjct: 188 VVELVDACRKLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRAR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + VE+ GRG W I+V EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E++R+VL P
Sbjct: 248 YEVEDAGRGQWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDENIRLVLEP 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R+++P++LMES+F +SD+ETRFP+NMNVL     P+VM L   L  WL HRR VL R 
Sbjct: 308 KSRNIEPEVLMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRM 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S++R++ I++R+ +L GL+IA+LN+DE+I I+R EDKP+ +++SRF+L+E Q D IL+ R
Sbjct: 368 SNWRLEKIEKRLHLLDGLMIAFLNLDEVIRIVREEDKPRDMLMSRFTLSELQADYILDTR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L +LEE  I+ E   L  E+E I +LL S K QW +I   + EV++          R
Sbjct: 428 LRQLARLEEMVIQDEHKKLSEEREGILALLGSEKMQWKRIDQLLVEVRKKLPSP-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           RTT+ +     +    ++ + KE ITV++S RGWIR+ K    D S L FKEGD L   +
Sbjct: 483 RTTYADAPVGIEVAAIESYLPKEAITVILSKRGWIRAAKGKVEDPSELKFKEGDELSFLV 542

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             + TD+ L+L+TDG+  TL    L S RGHGE ++L++D+  +  IVT F Y +  K +
Sbjct: 543 PGYNTDKFLILTTDGRFLTLSGDKLPSARGHGEPLRLMLDIEESAKIVTVFAYTAGAKRV 602

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           +V+  G  F++ E + +AN R GK  + V    +    ++VTGD + V+GEN K+L++ +
Sbjct: 603 MVAKNGYGFVMNEEDAVANKRAGKQTMTV-DGTEAMAALQVTGDLICVLGENNKVLVYPV 661

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            ++PEM+RGKGV+LQ+YKDGG+ D+  +       W D AG++  R   D+  ++G+R  
Sbjct: 662 TELPEMARGKGVKLQAYKDGGVKDITVYDSNGSPQWFDGAGKA--RDFKDIKDYIGRRAT 719

Query: 736 VGSLVPKGFPR 746
            G + P+G  +
Sbjct: 720 AGKMAPRGLRK 730


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/815 (32%), Positives = 409/815 (50%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI+NP+++I +L+EYI GPDFPT  I +  R+ I+++Y  GRG  
Sbjct: 182 IPPHNINEVVSGCLALIENPDLTINELMEYIPGPDFPTAAI-INGRKGIIDAYHTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRAKADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVVEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     R+ LTE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S ++    I  E++EV E F      G  R T    +  D +   + 
Sbjct: 480 LLEIIAALLYILRSPERLMEVITEELQEVLENF------GDERRTVINANEVDMSL--ED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  ++ L+  + I        Y     +++ ++ 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G       +        G   + +   +++  V    G D + +  +  K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRD 711

Query: 676 -------------DQI---PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                        +++     M R   GVR    +D      +     +G   +      
Sbjct: 712 SETGQVKLDPETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGA-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +        R   G +  K   R+G  + +
Sbjct: 771 YGKRTDLSEYPAKSRATKGVVSIKISERNGAVVGA 805



 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 34/273 (12%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           ++  +   +  T  GR       +S  ++  A L       +   ++ +  G ++     
Sbjct: 601 LKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAHGTVKKTALT 660

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---- 586
           +        + A++ K+GD L      +  D I+L S  GK          S  G     
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLD 720

Query: 587 ---GEAIQLL------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
              GE +  L            I L  +Q +V+  V      +L V+  G     + SE 
Sbjct: 721 PETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGAILTVTENGYGKRTDLSEY 780

Query: 632 IANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            A +R  K  + +     +   +  V     D + ++ +   L+      +  + R  +G
Sbjct: 781 PAKSRATKGVVSIKISERNGAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQG 840

Query: 687 VRLQS--YKDGGISDVICFKICEGLTWIDSAGR 717
           V +     ++  +      +I +    +D  G 
Sbjct: 841 VTIIRTAEEEKVVGLQRIDEIQDDEVELDEEGN 873


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 591 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 649

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  S+   IR        L   +  +  +  +EGD +      HA
Sbjct: 650 ELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 710 NSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV 
Sbjct: 770 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/816 (32%), Positives = 410/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
               ++       G   + +  ++ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     +      +     EG   +     
Sbjct: 716 ENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEGD-ILTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGA 810



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L+     ++    + +  G ++    +         L A++ +E DSL   
Sbjct: 625 EEGERITAILRVDEFSEDKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLL-------------------- 593
              +  + I+L S  GK         +     +G+ +                       
Sbjct: 685 DITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASG 744

Query: 594 ---IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
              + L  N  +V+  V      +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  +  V GD + ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAED 854


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/747 (34%), Positives = 395/747 (52%), Gaps = 31/747 (4%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIG
Sbjct: 80  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L
Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VD++  Y+E  +EP   P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA  
Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LID+P+ ++++L+  + GPDFPTG +I+   + I +SY  GRG   VRA+  VE    G
Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIM-GTDGIRQSYETGRGSITVRAKAHVESTKTG 318

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +V TEIPY V K  L EKIA L+  KRI  + D+RDES +    ++    + + P +
Sbjct: 319 RNRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQV 378

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F  N   L  G +P+ + L  +L+ ++ H+ +V+ RR+ F ++   
Sbjct: 379 VLNNLYKYTSLQTTFGANNLALVNG-IPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQ 437

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G L A  +IDE+I+IIR+     +    ++ RF  +  Q  AIL ++LR L  
Sbjct: 438 ARAHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLTG 497

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ EL+ L       + LL   ++    I  E+RE+   F        RRT   +
Sbjct: 498 LERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGDK-----RRT---Q 549

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKI 553
           ++ A+K    + +I  E + V I++ G+++          K     +S ++ KE D +  
Sbjct: 550 ITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGGKGVSGVNLKEDDVIDE 609

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---Y 608
              A T + +L  ST GK Y L    L  G     G AI  L+     + I +      +
Sbjct: 610 MFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCREF 669

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
                L+  ++ G       +    + R G   + +   +++  V +V  GD + +    
Sbjct: 670 PEDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDRLLGVRRVKPGDKIIMATTA 729

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSEND 725
            K ++FS DQ+    R   GVR    K    ++V+  +I  G         R Y +    
Sbjct: 730 GKAIMFSEDQVRATGRDTSGVRGIGMKAD--AEVLGMEITNGSGELFVITERGYGKRTPV 787

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG G    +   R G   +
Sbjct: 788 ADYPEQNRGGQGVYTIQMTDRKGALAA 814



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 90/246 (36%), Gaps = 21/246 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      + +      ++   +  +  G ++     + D S      A++ K+GD L   
Sbjct: 655 EDGEKIASVISCREFPEDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDRLLGV 714

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D+I++ +T GKA       +    G   +    I +  + +++   + + + +L
Sbjct: 715 RRVKPGDKIIMATTAGKAIMFSEDQV-RATGRDTSGVRGIGMKADAEVLGMEITNGSGEL 773

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
            V++ +G       ++     R G+    ++++  +     +KV G    + ++ E   +
Sbjct: 774 FVITERGYGKRTPVADYPEQNRGGQGVYTIQMTDRKGALAAMKVVGPQHELLIITEGATV 833

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC---------FKICEGLTWIDSAGRSYN 720
           L     +I +  R   GV++ S  +G     +              EG   +++ G    
Sbjct: 834 LRVKTAEISQTGRATQGVKMMSVDEGDRVTAVARMTAAKKKDGDSAEGEESVEAEGGEPT 893

Query: 721 RSENDL 726
               DL
Sbjct: 894 AQPADL 899


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/790 (33%), Positives = 404/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+    LA I+N +ISIE+L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 REVINGCLAYIENEDISIEELMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARG 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I++ E+PYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVAL-HQGQPKIMALKEILDAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+   +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLRILSDADRLMEVIREELELMRDQFGDE-----RRT---EITANTADINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  N+ I        Y     + + ++ G    
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFNIFMATALGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               E       G   + +  ++++  V    G D   +     K++ F+   +  M R 
Sbjct: 658 TALKEFSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR     +G     +     EG   +      Y +   +       R   G +  K 
Sbjct: 718 ASGVRGIRLAEGDRVVSLIVPREEGA-IMTVTQNGYGKRTANSEYPTKSRATQGVISIKV 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 TERNGPVIGA 786



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++        +  S  + A++ ++ D L   
Sbjct: 626 EANERITAILPVREYTEGFNIFMATALGTVKKTALKEFSRPRSAGIIAVNLRDDDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
              +  D  +L S  GK          + R  G     +  I L     +V+  V     
Sbjct: 686 ALTNGNDEAMLFSAAGKVVRFAE---TAVRAMGRTASGVRGIRLAEGDRVVSLIVPREEG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            ++ V+  G       SE    +R   G   +KV+      +  V  V GD + ++ +  
Sbjct: 743 AIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + ++  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGS 854


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/816 (32%), Positives = 410/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
               ++       G   + +  ++ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     +      +     EG   +     
Sbjct: 716 ENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEGD-ILTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGA 810



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 77/230 (33%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L+     ++    + +  G ++    +         L A++ +E DSL   
Sbjct: 625 EEGERITAILRVDEFSEDKFIFMATGDGTVKKTPLNQFANVRSNGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLL-------------------- 593
              +  + I+L S  GK         +     +G+ +                       
Sbjct: 685 DITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASG 744

Query: 594 ---IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
              + L  N  +V+  V      +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  +  V GD + ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAED 854


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I  PDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 23/235 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGD-----HVAVVG 665
            +L  +  G       +E    +R  KG   +KV+    + +      D      + ++ 
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIMMIT 802

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 DAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 857


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/781 (32%), Positives = 415/781 (53%), Gaps = 41/781 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  I+++     E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MTEITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMR 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+       F KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++D
Sbjct: 61  ELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTEARMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++G
Sbjct: 121 GDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+ +  + +I++P I++  L+E I GPDFPTGG  +  R  I E+
Sbjct: 181 IAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGG-FICGRAGIREA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R+R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    +    ++++  ++ ++ ++  F + M  +     P+V+ L  IL+
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNM-RPEVLNLRQILE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            ++ HR+ V++RR+++ ++  + +  +L+GL IA  N+DE++A+I+   N  + +  +++
Sbjct: 359 NFILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLIN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+  Q  AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E 
Sbjct: 419 RFGLSAIQAQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEF 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             ++E +        RRT   +        L + MI +E + V +++ G+I+        
Sbjct: 479 EAIRETYGD-----DRRTEIIDAPD---EILPEDMIAREEMVVTVTHAGYIKRNPVDTYR 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             +     +      + D +     A T D +L  S  G+ +      +        G+A
Sbjct: 531 SQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLARGKA 590

Query: 590 IQLLIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +  L++L   + +      DS          +L+ + KG       SE     ++GK  L
Sbjct: 591 VVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIAL 650

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI--- 697
            +  ++++      TGD  V ++      + F  D I  M RG  GVR  +   G     
Sbjct: 651 TIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAMGRGASGVRGITLAAGDEQKG 710

Query: 698 ---SDVICFKICEG---LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               ++I  ++  G    + +  +   + +        L +RGG G +  K   R+G+ +
Sbjct: 711 IPADELIGLQVLSGDPEASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERNGEVV 770

Query: 752 S 752
            
Sbjct: 771 G 771



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++ + +G ++        +       AL  +E D +  A      + +LLLS  G A  
Sbjct: 622 ILMATKKGVVKKTALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVR 681

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI---------VTAFVYDSTCKLLVVSSKGNAFI 625
               ++ +       ++ +     ++           +     D    +LVVS  G    
Sbjct: 682 FHEDDIRAMGRGASGVRGITLAAGDEQKGIPADELIGLQVLSGDPEASILVVSENGFGKR 741

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEM 681
            +  E     R GK  + + + E+   VV        D V ++    +++   +  I  +
Sbjct: 742 SKVDEYRLIRRGGKGVMAIKASERNGEVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVI 801

Query: 682 SR-GKGVRLQSYKDG 695
            R  +GVRL +  + 
Sbjct: 802 GRSTQGVRLFNLDNE 816


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/815 (32%), Positives = 408/815 (50%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +VA  +L  ++++ VD+   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI+NP+++I +L+EYI GPDFPT GI +  R+ I+++Y  GRG  
Sbjct: 182 IPPHNLNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGI-INGRKGIIDAYHTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  VE    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 VMRAKAEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M++ F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVVEIKRGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     R+ LTE Q  AIL+LRL  L  LE  +I  E + 
Sbjct: 420 QSMLEKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L S  +    I  E++EV E F        RRT     +  +     + 
Sbjct: 480 LLEIIAALLYILRSSVRLMEVITEELQEVLENFGDE-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  ++ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYAEDKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    G + + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARN 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR    +DG     +     EG   +      
Sbjct: 712 SETGEVKLDPETGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGD-ILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +        RG  G +  K   R+G  + +
Sbjct: 771 FGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGA 805



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 32/249 (12%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           ++  +   +  T  GR       +S  ++  A L      ++   ++ ++ G ++     
Sbjct: 601 LKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYAEDKYIIMATSHGTVKKTALT 660

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG------------ 578
           +        + A++ K+GD L        ++ I+L S +GK                   
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLD 720

Query: 579 -----NLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                 +++ R  G     +  I L   Q +V+  V      +L V+  G     + +E 
Sbjct: 721 PETGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGFGKRTDLAEY 780

Query: 632 IANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            A +R  KG   +KVS      +  V     D + ++     L+      +  + R  +G
Sbjct: 781 PAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQG 840

Query: 687 VRLQSYKDG 695
           V +    + 
Sbjct: 841 VTIIRTAED 849



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  ++G  +   +       IL ++ +G           +     + 
Sbjct: 730 LRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGFGKRTDLAEYPAKSRGTKG 789

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  +V A       +++++S+KG       + + +  R   G T ++ + +
Sbjct: 790 VVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED 849

Query: 648 EKMKLVVKVTG 658
           EK+  + ++  
Sbjct: 850 EKVVGLQRIDE 860


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/765 (31%), Positives = 405/765 (52%), Gaps = 37/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 10  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 70  CSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D D VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 130 RMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       ++NP+ + E+LLE     I GPDFPT G+IV  R+ I ++YR GRG  
Sbjct: 190 NLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIV-GRQGIEDAYRTGRGSI 248

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   RI  + D+RDE SA   
Sbjct: 249 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDVRDETSARIG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  +  G VP+ + LD +++ ++ H+ 
Sbjct: 308 QRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDG-VPRTLRLDQMIRYYVEHQV 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           +V+ RR+ ++++    R+ +L+GLLIA  ++D++IA+IRN    D  +  +++R+SL+E 
Sbjct: 367 DVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQLMTRYSLSEI 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  E   L A+  +++++L S ++Q   I  E++EV + F
Sbjct: 427 QATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAILASPQRQREIIGEELKEVVDKF 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        +     + +I +E + V ++  G+         RS K    
Sbjct: 487 GDE-----RRTRIV---PFEGEMSIEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQKRGGK 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     +E D ++      T   +L  +  G+ Y   A  L        G+ +  ++  
Sbjct: 539 GVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAF 598

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y +   L++ + +G       ++  +N   G   + +  ++++   
Sbjct: 599 GQDERIAEVMAIRDYAAAPYLVLATKRGLCKKSALTDFDSNRAGGLVAINLREDDEVIGA 658

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-DGGISDVICFKICEG 708
             V   D + +V  N + + F  D   +  M R   GV    +  D  +  +   K    
Sbjct: 659 RLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRFDADDELLSIEVIKPDST 718

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + + +    + +  +     L  RGG G L  +  P  G  + +
Sbjct: 719 ASLLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIVPSRGNLVGA 763



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 14/192 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ + RG  +       D +      A++ +E D +  A      D +LL+S + ++
Sbjct: 617 PYLVLATKRGLCKKSALTDFDSNRAGGLVAINLREDDEVIGARLVGADDDLLLVSRNAQS 676

Query: 573 YTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
               A +      GR     I +  D +     +     DST  LLV +S G A     +
Sbjct: 677 IRFHADDEQLRPMGRATAGVIGMRFDADDELLSIEVIKPDSTASLLVATSGGFAKRTHLN 736

Query: 630 EIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R GK  L    V S   +   + V   D +  +  N  +L      + +  R  
Sbjct: 737 EYPLQGRGGKGVLTARIVPSRGNLVGALVVEPDDQLYAIASNGGVLRTVARDVRQAQRQT 796

Query: 686 -GVRLQSYKDGG 696
            GV+L   + G 
Sbjct: 797 MGVKLIDLETGV 808


>gi|332290506|ref|YP_004421358.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
 gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/816 (32%), Positives = 415/816 (50%), Gaps = 87/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM+  G D+   ++K
Sbjct: 6   KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RYPL+ GQGNFG+IDGDS AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMTQ+A  +L  +D++ VD++  Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +I+I++L+ YI GPDFPT  I +  +  I E+Y+ GRG   +RA
Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAI-INGKRGIEEAYKTGRGKIYIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E   +G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 245 KADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEIVLNNLYALTQLQVTFGINIVAL-DHGQPKLLNLKELIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ + ++    R  IL+GL IA  NID II +IRN   P                     
Sbjct: 364 RTVYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL+LRL+ L  LE  +I  E  +LL  
Sbjct: 424 AAAGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S  +    I  E+ ++K  ++       RRT   E++ +      + +I  
Sbjct: 484 IAELLHILHSPARLMEVIREELEKIKAQYNDP-----RRT---EITASSGDINLEDLINP 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  L+ L  N+ I        Y     +++ ++ G   
Sbjct: 596 GRLYWLKVYQLPQASRGARGRPIVNLLPLEENERITAILPVKEYAEDKFIVMATAGGLVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
               +E       G   + +  ++++  V    G + + +     +++ F  + +  M R
Sbjct: 656 KTALTEFSRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAMGR 715

Query: 684 -GKGVRLQSYK------------------------DGGISDVICFKICE-GLTWIDSAGR 717
              GVR                             D  I  V+   I +     + +   
Sbjct: 716 TAAGVRGIKLALTNDISDEENDNEESGNDETDQSLDLSIDKVVSLVIPKTNGAILTATQN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        R   G +  K   R+GK +++
Sbjct: 776 GYGKRTDLAEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 36/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      ++   V+ +  G ++        +  +  + A++ ++ D L   
Sbjct: 625 EENERITAILPVKEYAEDKFIVMATAGGLVKKTALTEFSRPRANGIIAVNLRDDDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL-------LSGRGHGEAIQLLIDLNHNQ------- 600
                 + I+L S  G+        +          RG   A+   I    N        
Sbjct: 685 DITEGNNEIMLFSAQGRVVRFDENAVRAMGRTAAGVRGIKLALTNDISDEENDNEESGND 744

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  +  +   +L  +  G     + +E    +R  K  + +   E+
Sbjct: 745 ETDQSLDLSIDKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSER 804

Query: 650 MKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              VV        D + ++ +   L+   + +I  + R  +GVRL    D
Sbjct: 805 NGKVVAAAQVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSD 854


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 9   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 68

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 69  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 128

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 129 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 188

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 189 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 247

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 248 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 308 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 367 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 427 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 486

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 487 ------GDDRRTEIQLGGFEN-LEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 540 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 599

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 600 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 659

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 660 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 717

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 718 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 761



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 603 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 662

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 663 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 721

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 722 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 781

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 782 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 837



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 572 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 627

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 628 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 687

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 688 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 747

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 748 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 807

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 808 QFVSTVAKVKED 819


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHENS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V       ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHENSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHA--HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +     A  ++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHENSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/765 (31%), Positives = 405/765 (52%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I  + L++YI  PDFPTGG  +     + E+Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGG-YIYGVSGVREAYETGRGRIVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E        I+V EIPY V K  LIEKIA L+  K++  +  I DE+  +   ++
Sbjct: 243 AKTEIESHPT-HDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++++++ F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTELQSSFNVNNIALV-HGRPRLLSLKDLIRLFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q  A
Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E + L+ +    + +L++ +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGDK- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  + +    +     + + + IS+ G+I+              V    
Sbjct: 480 ----RRS---EIVYSSEEFNPEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A   + +L  +  GK Y L    +  G     G AIQ L+++  + 
Sbjct: 533 SETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADD 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  +L  +  G        +     + G   + +  ++++  
Sbjct: 593 KVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRPRQNGVNAITIREDDRVIE 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICE 707
           V    GD  + +   N + + F+   + EM R   GVR  +  + G  +V   IC K  +
Sbjct: 653 VRMTKGDNDIVIANRNGRAIRFNETAVREMGRTATGVRGITLDEDGQDEVVGMICIKDPQ 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 713 KETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVA 757



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 14/197 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           +  +  G I+        +     ++A+  +E D +         + I
Sbjct: 603 LNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRPRQNGVNAITIREDDRVIEVRMTKGDNDI 662

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK--LLVVSSK 620
           ++ + +G+A       +         ++ + +D +   ++V         K  ++V+S  
Sbjct: 663 VIANRNGRAIRFNETAVREMGRTATGVRGITLDEDGQDEVVGMICIKDPQKETIMVISEH 722

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  EK   +  +  VT +  + ++ ++   +   + 
Sbjct: 723 GYGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVAIKSVTDENDLMIINKSGITIRLKVA 782

Query: 677 QIPEMSRGK-GVRLQSY 692
            +  M R   GVRL   
Sbjct: 783 DVRIMGRATQGVRLIDL 799


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIASFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/793 (33%), Positives = 416/793 (52%), Gaps = 67/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+KK
Sbjct: 6   HDVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    LA I+N +I+I++L+E I GPDFPTG   +  R  IV++YR GRG   VRA
Sbjct: 186 NLKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGA-TINGRAGIVQAYRTGRGRIYVRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  VE   +     I++TEIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D+R+V+
Sbjct: 245 KAHVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKDIRVVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R    D+++ +++  + ME  F +N+  L  G+ P+++ L  +L+ ++ HRREV+ 
Sbjct: 305 ELK-RGEIGDVILNNLYAQTQMEGVFGINVVALVDGQ-PKILNLKQLLECFVRHRREVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NIDE+I +I+N   P                    
Sbjct: 363 RRTIYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQF 422

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  ++ L+  Q  AIL LRL  L  +E  ++  E    +A
Sbjct: 423 LERAGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVA 482

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +   +L S  +    I  E+ E+++ +      G  R T  + S+ D     + +I 
Sbjct: 483 RIAEFLEILGSSTRLMEVIREELEEIEKNY------GDERRTDIQSSKRDLTI--EDLIT 534

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E   V IS+ G+ ++         +      +A   K+ D ++  L A T D IL  + 
Sbjct: 535 EEDRVVTISHGGYAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTN 594

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +     +  G  I  L+ L+ ++ I +      YD    + + ++ G  
Sbjct: 595 AGKVYWLKVFQIPLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGTV 654

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  +  +       G+  V +     K + F+ + +  M 
Sbjct: 655 KKTPLTQFARPRTSGLRAIDLEEDNHLVGTAVTDGNSDVMLFSSEGKAVRFNENDVRSMG 714

Query: 683 RG-KGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  +GVR     +G   +VI   +  E    +  +   Y +           R G G + 
Sbjct: 715 RTSRGVRGIRLAEGY--EVISMVLPTEDGKVLTVSENGYGKRTKVDEYATKGRAGKGMIA 772

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK + +
Sbjct: 773 MQTSERNGKVVGA 785



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 89/230 (38%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + S    + L     +++    + +  G ++        +  +  L A+  +E + L   
Sbjct: 625 DESERITSILPVREYDEDHFIFMATANGTVKKTPLTQFARPRTSGLRAIDLEEDNHLVGT 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L S++GKA      ++ S       ++  I L    ++++  +     K+
Sbjct: 685 AVTDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRGVRG-IRLAEGYEVISMVLPTEDGKV 743

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L VS  G     +  E     R GK  + + + E+    +  V    GD + ++ +   +
Sbjct: 744 LTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERNGKVVGAVQVFDGDEIMLISDQGTM 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   +D++    R  +GVR+   KDG    G+  +      E +   +SA
Sbjct: 804 VRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVERIESIADDEIVDTAESA 853


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/789 (32%), Positives = 403/789 (51%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+  A+KKSAR+
Sbjct: 10  PVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKAYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEVRMAR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ +
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATNIPPHNLTD 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           IC A  AL+D P   IE L+  +  PDFPT GI +     + + YR GRG   +RA   V
Sbjct: 190 ICNALFALLDAPATDIESLISIVQAPDFPTAGI-IYGLSGVRDGYRTGRGRVVMRATCHV 248

Query: 259 EEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           E++ +  G   I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V    
Sbjct: 249 EDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSGMRVYIEL 308

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++ +++  + M+  F +NM  L  G+ P+++ L  +L  +L HRREV+ RR+
Sbjct: 309 KRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQ-PRLLNLKEMLDAFLRHRREVVTRRT 367

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            F ++    R  IL+GL +A  N+DEI+ +I++ + P   K  ++ R             
Sbjct: 368 VFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMVEEMLAR 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+E Q   IL ++L+ L  LE  +I +E   ++A+  
Sbjct: 428 IDPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKEIMAKIA 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L +  +    I  E+ +V++ F        RR+T  E     +    + +I+ E 
Sbjct: 488 DLLDILANPARITQIIREELTQVRDQFGDG-----RRSTIVE---NAQDMSMEDLIKPEE 539

Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+         R+ K       A   K+ D ++    A+T D IL  S  G+
Sbjct: 540 MVVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGR 599

Query: 572 AYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L   N+  G     G+ I  L+ L   + I        +D    + + ++ G     
Sbjct: 600 LYWLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFDDEHYVFMATANGIVKKT 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
             SE       G   + +   + +       G H V +  ++ K + F  + +  M R  
Sbjct: 660 PLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPMGRAA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GV       G     +     E    + +    Y +           R   G +  +  
Sbjct: 720 RGVIGMKLAKGAKLISLLVAEDENDFVLTATENGYGKRTPIAEYTRHARATQGMIAIQTS 779

Query: 745 PRSGKFLSS 753
            R+GK +++
Sbjct: 780 ERNGKVVAA 788



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 17/209 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     + E    + +  G ++        +  +  + A+   +GD L  A
Sbjct: 627 EDGEKISALLPVKTFDDEHYVFMATANGIVKKTPLSEFSRPRTAGIIAVGLDDGDVLCGA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTC 612
                   ++L S  GKA      ++   R  G A + +I   L     +++  V +   
Sbjct: 687 SITDGRHDVMLFSDSGKAVRFDENDV---RPMGRAARGVIGMKLAKGAKLISLLVAEDEN 743

Query: 613 KLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGEN 667
             ++  +  G       +E   + R  +  + + + E+   VV        D + ++   
Sbjct: 744 DFVLTATENGYGKRTPIAEYTRHARATQGMIAIQTSERNGKVVAANLVKADDEIMLITTG 803

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
             L+   + +I  MSR   GV L +   G
Sbjct: 804 GVLIRTRVKEIRAMSRATQGVTLINLDKG 832



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 3/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R +   +  +  +   +G  L   L A    D +L  + +G     P           +
Sbjct: 712 VRPMGRAARGVIGMKLAKGAKLISLLVAEDENDFVLTATENGYGKRTPIAEYTRHARATQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A +  +  +++++++ G        EI A +R   G T + +  
Sbjct: 772 GMIAIQTSERNGKVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDK 831

Query: 647 EEKMKLVVKVTGDH 660
            EK+  + KV    
Sbjct: 832 GEKLISLEKVAETD 845


>gi|332344011|gb|AEE57345.1| DNA gyrase, A subunit GyrA [Escherichia coli UMNK88]
          Length = 875

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAHGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATAHGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/765 (31%), Positives = 390/765 (50%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RYTE
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT IP 
Sbjct: 144 CKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPP 203

Query: 194 HNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I ++YR GRG 
Sbjct: 204 HNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQAGIQDAYRTGRGS 262

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308
            R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+   
Sbjct: 263 IRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRT 322

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ H+
Sbjct: 323 GMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVEHQ 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    + E
Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLDIDE 441

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+   
Sbjct: 442 VQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAK 501

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           +        RRT        D     + +I +E + V I+  G+         RS +   
Sbjct: 502 WGD-----DRRTKIV---PFDGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
             +S    ++ D +       T D IL  +  G+ Y   A  L        G+ +  L+ 
Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLA 613

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              ++ I       +      L++ +  G        E  +N   G   + +  E+++  
Sbjct: 614 FQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVG 673

Query: 653 VVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            V V   D + +V +N + + F+     +  M R   GV    +  G    +    + EG
Sbjct: 674 AVLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRF-SGEDELLAVEVVREG 732

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 733 LDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 615 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTC 612
           +     D +LL+S + +A    A +  + R  G A   +I +      +++   V     
Sbjct: 675 VLVAPEDDLLLVSKNAQAIRFNATD-EALRPMGRATSGVIGMRFSGEDELLAVEVVREGL 733

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 734 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNG 793

Query: 669 KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            ++   +  +     R   GV+L    DG     I     E
Sbjct: 794 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 GNDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 412/764 (53%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L        S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYER----PELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/762 (33%), Positives = 414/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I+I +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++RAR  +EE G G   IVV+EIP+QV K+R+IEKIAEL   K++  + D+RDE++    
Sbjct: 242 QMRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++ L+ ++T F +NM  L  G  P+++ L   L E+L H++
Sbjct: 302 VRVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALING-RPKLINLKEALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++  + R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 VVVRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE + L+A  E++ ++L   ++    +  E+ EV+E F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R +  ++   D+    + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRSEIQLGGLDQ-IEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIEL 593

Query: 597 NHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T    +        L+  +  G       S      R GK  +    E+++  
Sbjct: 594 ENDESISTMIAVNDLEKEDAYLVFATKNGIVKRSSLSNFSHINRNGKIAINFRDEDELVA 653

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V    G   V +   +  L+ F   ++  + R   GV+  + ++G  +  +         
Sbjct: 654 VRLTDGTKDVLLGTSHASLIRFKESKLRPLGRTAAGVKGITLREGDELVGLAVATEDSED 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        +  RGG G        ++G  +
Sbjct: 714 EVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIV 755



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                      + +++   V  +  G ++     +          A++F++ D L     
Sbjct: 597 ESISTMIAVNDLEKEDAYLVFATKNGIVKRSSLSNFSHINRNGKIAINFRDEDELVAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-VTAFVYDSTCKLL 615
              T  +LL ++           L         ++ +     ++ + +     DS  ++L
Sbjct: 657 TDGTKDVLLGTSHASLIRFKESKLRPLGRTAAGVKGITLREGDELVGLAVATEDSEDEVL 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
           VV+  G       +E   + R GK      +   + + + +      + + +V     ++
Sbjct: 717 VVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGDIVCITTVTGEEDIMIVTNQGVII 776

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              +D I +  R   GVRL    +      +  K+ E L
Sbjct: 777 RIDVDDISQNGRAAQGVRLIRLGEEQFVSTVA-KVQEDL 814


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 404/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E  G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASIVLNKLYKMTMLQTSFGVNNVALV-HGRPRLLNLKDLIKHFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/767 (31%), Positives = 403/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG  +     + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGG-YIYGISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           VRL +  K       +C  + E L     A  +     +DL
Sbjct: 794 VRLINLEKRNDQIGSVCKVMTESLEDEVPAEEAEGTIVSDL 834


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFEN-LEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/754 (33%), Positives = 409/754 (54%), Gaps = 27/754 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + V++   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+   +    KK AR
Sbjct: 3   QNVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VY++LVRLAQ F  R PL  GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 63  IVGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+   +EPVV P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 123 RLASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLS 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A L LID PE S+E L++ + GPDFPTGG +    + + ++Y  GRG  +VR +  
Sbjct: 183 ELSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAG-QGLYDAYTTGRGTVKVRGKVE 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E+  +G   +++ EIP+ + KS L+EKIA LI  ++I  + D+RDES      V+    
Sbjct: 242 IEDRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ S++  + +ET F +NM  +     P ++ L   L  +L HRREV+ RR+ 
Sbjct: 302 RGTMPEIVINSLYKYTPLETSFGINMLAVVDN-RPVLLNLKTALAYFLDHRREVVVRRTK 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           F ++  + R  IL+GLL A  +IDE++++IR+   P   K  ++ RF L+E Q  AIL++
Sbjct: 361 FELRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQRFELSEVQAQAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I+ EL +LL++     S+L      W  I  E+  +K+ +S       
Sbjct: 421 RLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVLWGVIRDEVEYIKQTYSTP----- 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
           RRT       A      + ++  + + + +S RG+I+          +     ++ +H  
Sbjct: 476 RRTEVI--REALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTG 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ---D 601
           E D ++  +       +L+ +  G+ + L    +   S    G  I  L+ +  ++    
Sbjct: 534 EDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNT 593

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
           I+T   +      L  + +G       +    + + G   + +  ++++ +V ++T D  
Sbjct: 594 ILTVREFAEDKSFLFATRRGMVKRSSAALYARSRKGGLIAVGLREDDELIMVREITDDDF 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   +   + FS   +  M RG  GV+  + + G           +    +  +   +
Sbjct: 654 VVLATADGIAIRFSCRDVRNMGRGATGVKGIALRHGDTVVACLVLKEDSPAIMTISALGF 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  N  L  +  RGG G +  K  P++G  + +
Sbjct: 714 GKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGA 747



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 17/228 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   +  + RG ++        +S    L A+  +E D L + 
Sbjct: 586 EKDEWVNTILTVREFAEDKSFLFATRRGMVKRSSAALYARSRKGGLIAVGLREDDELIMV 645

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L + DG A      ++ +  G G      I L H   +V   V       
Sbjct: 646 REITDDDFVVLATADGIAIRFSCRDVRNM-GRGATGVKGIALRHGDTVVACLVLKEDSPA 704

Query: 615 LV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRK 669
           ++ +S+ G             +R GK  +      K   V+     +  + + ++    K
Sbjct: 705 IMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGAKSVLDDEALVLLTSTNK 764

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG----GISDVICFKICEGLTWI 712
           ++   +D+I  + R   GVRL    DG    G   V      EG   +
Sbjct: 765 IIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTVNSDADAEGEEAL 812


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 399/766 (52%), Gaps = 38/766 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   +++ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +A + +ID       E ++E++L+ + GPDFPTG +I+  R  I E+YR GRG 
Sbjct: 187 NLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMIL-GRRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLI KIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F +NM  L        P+V+ L  +L+ +LA
Sbjct: 306 MRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLEYYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E  +L+ +  K +++L         I  EI  + 
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRKYEAILADRSLLLRVIREEILAIA 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +      G  R T       D     + +I +E   + ++  G+I+            
Sbjct: 486 EKY------GDDRKTSIGYDVYD--ISTEDLIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
               +  +   E D ++  L   T   ++  +  G+ Y L A  +        G AI  L
Sbjct: 538 GGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   + I        ++    L++ +  G        E     + G   + +  ++++
Sbjct: 598 LQLMPGECITAVIPLRKFEDGHYLMMATKNGLVKKTPIKEYANVRKNGLAAITLRDDDEL 657

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CE 707
             V        + +V ++   + F    +    R   GVR  +  DG   +V+  ++  +
Sbjct: 658 IEVKLTDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVRGMNIDDG--DEVVAMQLNSQ 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 716 GDCLLIVSANGMGKRTSMGEFTCQNRGGKGVKCYKITEKTGDVIGA 761



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 19/242 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +     E     ++ +  G ++      
Sbjct: 578 KAYEIPEAGRTARGTAIINLLQLMPGECITAVIPLRKFEDGHYLMMATKNGLVKKTPIKE 637

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  ++ D L           I+L++ DG        ++ S       ++
Sbjct: 638 YANVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVR 697

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
            + +++   ++V   +      LL+VS+ G        E     R GK      +   + 
Sbjct: 698 GM-NIDDGDEVVAMQLNSQGDCLLIVSANGMGKRTSMGEFTCQNRGGKGVKCYKITEKTG 756

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKI 705
           + +        + V ++     ++  +   I  + R   GV+L +  +G  ++ V   + 
Sbjct: 757 DVIGARAVNEDNEVMLITTEGIIIRIACADISILGRITSGVKLINLTEGVTVASVAKVRD 816

Query: 706 CE 707
            E
Sbjct: 817 KE 818


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/815 (33%), Positives = 417/815 (51%), Gaps = 90/815 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 8   ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG+IDGD+AAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +++D VD+ D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHNM 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LALID+  +S++ L+EYI GPDFPTGGI +  R  I+E+YR GRG   VRAR 
Sbjct: 188 VEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGI-INGRAGILEAYRTGRGRIYVRARH 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+VTE+PYQV K+RLIEKIAEL+  KRI  + ++RDES ++   V+  
Sbjct: 247 TIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ ++F  + ++  F +NM  L  G  P+ + +  +L+ ++ HRREV+ RR
Sbjct: 307 VKRGESGEVVVNNLFAQTQLQNVFGINMVAL-DGGEPRTLNIKEVLEAFIRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+GL +A  NIDE+I +I+                           
Sbjct: 366 TLFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLE 425

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL LRL  L  LE  ++  E   +L 
Sbjct: 426 RAGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILE 485

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +  ++ ++L S  +    I  E+  V++ F      G  R T  + S  D +   + +I 
Sbjct: 486 KIAELTAILASADRLLEVIREELTAVRDQF------GETRRTEIQASHLDLSI--EDLIA 537

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S  G+ ++         +      SA   K+ D ++  L A T D +LL S 
Sbjct: 538 EEDMVVTVSRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSN 597

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G+ +  L+ L  ++ I        YD    +   ++KG  
Sbjct: 598 RGKVYWLKVYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDPDSYIFFATAKGTV 657

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +   +++      +G DH  ++  N K + F    +  M 
Sbjct: 658 KRTSLAQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAMG 717

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLT-----------------------WIDSAGRS 718
           R  +GVR     DG  ++VI   I                             + ++   
Sbjct: 718 RTARGVRGMRLLDG--AEVISLIIPRSQLIDAEDQDDAAADSAEPLDAGQIYILTASENG 775

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +        L  RGG G +  +   R+G  +++
Sbjct: 776 YGKRTRLEEFPLRGRGGQGVIAMQTSERNGSLVAA 810



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 33/243 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E   A  A L     + +      + +G ++        +  SV L A+  +EGD L  A
Sbjct: 628 EEDEAINAILPVHDYDPDSYIFFATAKGTVKRTSLAQFSRPRSVGLIAIDLEEGDRLVGA 687

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
                +D  +LLS++GKA      N+ +       ++ +  L+  + I            
Sbjct: 688 AITSGSDHAMLLSSNGKAIRFDESNVRAMGRTARGVRGMRLLDGAEVISLIIPRSQLIDA 747

Query: 608 -------------YDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
                         D+    +L  S  G        E     R G+  + + + E+    
Sbjct: 748 EDQDDAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERNGSL 807

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +  +     D + ++ +   L+   +D++   SR  +GV L    +   S V   +I E 
Sbjct: 808 VAAMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESE-SLVKTVRIDEP 866

Query: 709 LTW 711
              
Sbjct: 867 EEV 869


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/767 (31%), Positives = 403/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG  +     + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGG-YIYGISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  + +  + + Y +           RGG G        ++GK ++
Sbjct: 711 LETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 86/215 (40%), Gaps = 19/215 (8%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G I+        +     ++A+  +E DS+      +  + I++ + +G+A  
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D  T  ++VVS +G     E  + 
Sbjct: 674 FHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETESVMVVSEQGYGKRSEIEDY 733

Query: 632 IANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    + ++ +  K+  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYKD-----GGISDVICFKICEGLTWIDSAG 716
           VRL + +      G +  V+   + + +   ++ G
Sbjct: 794 VRLINLEKRNDQIGSVCKVMTESLEDEVPTEEAEG 828


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 394/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E   L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       IL+ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 396/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + ++ + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDQNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   L+DNPE S E+     +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    +I  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGN-RQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +  ++ + Q DAIL ++LR L  LE  +I  EL  +      +  +L   ++Q   +  
Sbjct: 418 KTLLAVDDVQADAILAMQLRRLAALERQKIIDELAEIEEIIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ E +        RRT     S        + +I +E + V I++ G+        
Sbjct: 478 ELAEIVEKYGDE-----RRTQIVAASG---DVTDEDLIARENVVVTITSTGYAKRTKVDA 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L        G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 708 LSMSVVHDGGYLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  +++  V     
Sbjct: 659 SLVDEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGG 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 718 YLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAIAVDEEDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++   ++QI   SR   GVRL +  +      I   + +
Sbjct: 778 GVIRTEVNQIRPSSRATMGVRLVNLSNDVELLAIDRNVED 817


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/765 (33%), Positives = 409/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+ Y L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   +++ 
Sbjct: 593 PLAVGESVTTMIDLERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-- 707
            V+  TG+   ++G      +  + + +  M R   GVR    K G +         +  
Sbjct: 653 SVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESDES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +   Y +        + KRGG+G+   +   ++G  ++
Sbjct: 713 EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVA 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  +G
Sbjct: 593 PLAVGESVTTMIDLERIHENVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDDG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   +       IL+ +  G A      ++   +     ++  I L     +V A V 
Sbjct: 649 DRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRG-IKLKTGDVVVGAGVL 707

Query: 609 DST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHV 661
           +S     ++  +S +G     E        R G         +K   VV V      D V
Sbjct: 708 ESDESEAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVAVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICF 703
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G     I  
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEGDKVASIAV 811


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 414/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++G  +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTAHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 IDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ +        P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTAHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSIDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 12/224 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 591 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 649

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  ++   IR        L   +  +  +  +EGD +      HA
Sbjct: 650 ELIAVRLTSGQEDILIGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 710 NSIDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV  D
Sbjct: 770 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED 813


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNVGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADDETNEDEQSTSTVSED 831



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 591 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 649

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  S+   IR        L   +  +  +  +EGD +      HA
Sbjct: 650 ELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 710 NSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV 
Sbjct: 770 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/814 (30%), Positives = 399/814 (49%), Gaps = 86/814 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  A+KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A L ++ NPE +I++L+E I  PDFPT GI +   + + E YR GRG   +RA+   
Sbjct: 190 VVTACLHVLHNPECTIDELIEIIPAPDFPTAGI-IYGVQRVREGYRTGRGRVVMRAKTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I+V E+PYQV K  L+E+IAEL+  K++  + D+RDES +    V+    
Sbjct: 249 EDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L   + P+++ L  +L+ +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQ-PRLLNLKQMLEYFLQHRREVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R   L+GL +A  NIDE IAII+    P                        
Sbjct: 368 FELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVREMLARA 427

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+++Q   IL +RL+ L  LE+ +I +E   
Sbjct: 428 ETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKE 487

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++AE   +  LL   ++    I  E++EV+  F  +     RR+              + 
Sbjct: 488 VMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFI---EVNATELFTED 544

Query: 514 MIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  + + V +SN G+         R+ K       A   K  D ++    A+T D IL 
Sbjct: 545 LITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDTILC 604

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  G+ Y L    +   S    G+ I  +  L   + I        Y     + + +S 
Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGYQDNQYVFMATSL 664

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G       S+     + G   + ++  + +       G H V +  +  K + F  + + 
Sbjct: 665 GTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRFDENDVR 724

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGL-------------------TWIDSAGRSY 719
            M R  +GVR  +  +G    VI   +                       + + +    Y
Sbjct: 725 PMGRTARGVRGMNLGEGH--QVIAMLVAPAEAAEGVEAAVVDANGIAIPSSVLTATENGY 782

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RG  G +  +   R+GK +++
Sbjct: 783 GKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAA 816



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 68/221 (30%), Gaps = 30/221 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
                 L     +      + ++ G ++  +           + A+   E D L  A   
Sbjct: 641 EKITVILPIKGYQDNQYVFMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAIT 700

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------ 611
                ++L S  GKA      ++         ++ + +L     ++   V  +       
Sbjct: 701 DGQHDVMLFSDAGKAVRFDENDVRPMGRTARGVRGM-NLGEGHQVIAMLVAPAEAAEGVE 759

Query: 612 ------------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                         +L  +  G       +E   + R  K  + + + E+   VV     
Sbjct: 760 AAVVDANGIAIPSSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAALV 819

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              D + ++     L+   + +I EM R   GV L +  +G
Sbjct: 820 SPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/779 (31%), Positives = 397/779 (50%), Gaps = 38/779 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +        + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPGGDDAVDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 61  MYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 121 PGNDPAAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT++P HN++E+ EA    +DN E   E     + E I GPDFPT G+IV   
Sbjct: 181 GGIAVGMATNMPPHNLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIV-GT 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R    +EE  +G   +V+TE+PYQV     I  IAE +   +I 
Sbjct: 240 QGIHDAYTTGRGSIRMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIA 299

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 300 GISNIEDQSSDRVGLRIVVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTL 358

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 359 RLDQLIRLYVNHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDI 418

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 419 ARTGLIELLDVDEIQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDILAKPERQR 478

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ E +        RRT       AD     + +I +E + V I+  G+   
Sbjct: 479 AIVKDELAEITEKYGD-----DRRTRII---SADGDVADEDLIAREDVVVTITETGYAKR 530

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                 RS K     +     K+ D +K      T D IL  +T G+ Y   A +L    
Sbjct: 531 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590

Query: 584 -RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y+    L++ +  G     + +E  +N   G 
Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATKNGLVKKSKLTEFDSNRSGGL 650

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDG 695
             + +   +++   V  +  D + +V  + + + FS     +  M R   GV+   +   
Sbjct: 651 VAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEALRPMGRATSGVQGMRF--N 708

Query: 696 GISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G  D++   +  EG   + +    Y++        +  RGG G L  +  PR G  + +
Sbjct: 709 GEDDLLSLNVVREGTYLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQYDPRRGSLVGA 767



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ ++GD L  A
Sbjct: 605 QPEERIAQVIQIKSYEDAPYLVLATKNGLVKKSKLTEFDSNRSGGLVAVNLRDGDELVGA 664

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S  G++    A +  + R  G A   +  +  N   D+++  V     
Sbjct: 665 VLCSAEDDLLLVSAHGQSIRFSATD-EALRPMGRATSGVQGMRFNGEDDLLSLNVVREGT 723

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENR 668
            LLV +S G +      E     R GK  L V  + +   +   + V  +     +    
Sbjct: 724 YLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQYDPRRGSLVGALVVDEESELYAITSGG 783

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++     Q+ +  R  KGVRL +  +G     I     EG
Sbjct: 784 GVIRTIAKQVRKAGRQTKGVRLMNLGEGDTLLAIAHNADEG 824



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 8/147 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G +              G+ 
Sbjct: 692 LRPMGRATSGVQGMRFNGEDDLLSLNVVREGTYLLVATSGGYSKRTAIEEYPVQGRGGKG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  +        +V A V D   +L  ++S G        ++    R  KG   + +   
Sbjct: 752 VLTVQYDPRRGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGRQTKGVRLMNLGEG 811

Query: 648 EKMKLVVK------VTGDHVAVVGENR 668
           + +  +           D  A      
Sbjct: 812 DTLLAIAHNADEGDADPDEDAAGTTAG 838


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I         +   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTECEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTECEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/764 (30%), Positives = 398/764 (52%), Gaps = 38/764 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G      + K 
Sbjct: 12  RVEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDSGFRPDRGYNKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPLI GQGNFG+   D AAA RYTEAR
Sbjct: 72  SRVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGNDPAAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ ++ED VDF D Y+    EP V PS+ PNLL NG SGIAVGMAT+IP HN
Sbjct: 132 LDPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +  +  +DNP+   E+    L++ I GPDFPT G I+   + I ++YR GRG  R
Sbjct: 192 LREVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQIL-GTQGIADAYRTGRGSIR 250

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +RA   VEE  +G   +VVTE+PYQV    L+E IA L    +I  + DI DES +    
Sbjct: 251 MRAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIADIADESNSRGGM 310

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + ++  F +NM  L  G VP+ + LD +++ ++ H+ +
Sbjct: 311 RIVITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDG-VPRTLRLDQMVRHYVNHQID 369

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + R  +L+GL  A  ++D +I +IR   N D+ +  ++    + E Q
Sbjct: 370 VIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTGLMELLDIDEVQ 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  L A+   +  +L+  ++Q   +  E+ E+ E + 
Sbjct: 430 ATAILDMQLRKLAALERQRILDELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYG 489

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT        +     + +I +E + V I+  G+         RS K     
Sbjct: 490 D-----DRRTKII---PYEGDVSIEDLIAEEDVVVTITRTGYAKRTKTDLYRSQKRGGKG 541

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     K+ D ++      T D +L  +  G+ Y   A +L        G+ +  L+   
Sbjct: 542 VQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEANRNARGQHVANLLAFQ 601

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I +      Y+    L++ + KG       ++  +    G   + +   +++   V
Sbjct: 602 PDERIASVIQIPNYEVAPYLILGTKKGLVKKSRLADFDSPRSGGLIGINLREGDELVGAV 661

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGL 709
             +  D + +V  + + + F  +   +  M R   GV    + +G  ++++    I  G 
Sbjct: 662 LASAEDDLLLVSSDGQSIRFHANDEVLRPMGRATSGVLGMRFNEG--AELLSINVIKPGT 719

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +        +  RGG G L  +   + G+ +++
Sbjct: 720 FLLVATEGGYAKRTAVEDYPVQGRGGKGVLTIQHDEKRGRLVAA 763


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/762 (33%), Positives = 412/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I+I +L+E I GPDFPT GII+  +  I  ++  GRG  
Sbjct: 183 IPPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIIL-GKSGIRRAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    
Sbjct: 242 QLRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L E+L H++
Sbjct: 302 VRVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNG-RPKLISLKDALVEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  D  K  M     +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + L+A  E++ S+L   ++    +  E+ +V+E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSILADEEKLLQIVRDELIDVRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERKTEIQLGGLD-DIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T             L+  + KG       S      + GK  +    ++++  
Sbjct: 594 DNDESISTMIAVKDLESEEDYLVFATQKGRVKRSALSNFSHINKNGKIAISFKQDDELIA 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
           V    G+  + +   +  L+ F    +  + R   GV+  + + D  +  +   K     
Sbjct: 654 VRLTDGETDILIGTSHASLIRFPETALRPLGRTAAGVKGITLREDDKVVGLDVTKAESDD 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 14/205 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  +E   V  + +G ++     +          A+ FK+ D L     
Sbjct: 597 ESISTMIAVKDLESEEDYLVFATQKGRVKRSALSNFSHINKNGKIAISFKQDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCKL 614
                 IL+ ++       P   L         ++  I L  +  +V   V   +S  ++
Sbjct: 657 TDGETDILIGTSHASLIRFPETALRPLGRTAAGVKG-ITLREDDKVVGLDVTKAESDDEI 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G        +   + R GK     +  E+   VV +T     + + VV  +  +
Sbjct: 716 LVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERNGNVVCITSVTGEEDLMVVTNSGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKD 694
           +   ++ I +  R   GVRL    +
Sbjct: 776 IRIDVEDISQNGRAAQGVRLIKLGE 800


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 64  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 184 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 243 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 303 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 362 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 422 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 482 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 534

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 535 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 594

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 595 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 654

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 655 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 712

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 713 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 756



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 598 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 657

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 658 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 717 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 776

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 777 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 809



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 592 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 650

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  S+   IR        L   +  +  +  +EGD +      HA
Sbjct: 651 ELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 710

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 711 NSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 770

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV 
Sbjct: 771 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERNKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 GNDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/762 (32%), Positives = 404/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A        + D  E +IE++L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  + ++++  ++  + ++  F + M  L  G  P+VM L  +L  +L H+ 
Sbjct: 306 MRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALV-GNEPKVMNLMEMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR        K  ++ RF LT+ 
Sbjct: 365 EVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFGLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E + ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAILADRKLLLGVIKEEILVIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I +E + + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEFDISMEDLIPREDVVITMTKLGYIKRMSHDTFKAQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++     +T   ++  +  G+ Y + A  +   S    G AI  L+ L
Sbjct: 537 GIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEASRTSRGTAIVNLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    LL+ + KG        E     + G   + +  E+++  V
Sbjct: 597 MPGEKISAVIPIEKYNDDEYLLMATKKGLIKKTPIKEYANVRKTGLAAITLREEDELIEV 656

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                DH V +V +  + + F+   +    R   GVR  +  D    +VI  +I  +G  
Sbjct: 657 KYTDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGVRGMNLVD--RDEVIGMQIDSQGTE 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEKTGNVVG 756



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 18/237 (7%)

Query: 483 KEIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            + +         R T               A +       +   ++ + +G I+     
Sbjct: 573 MKAYEIPEASRTSRGTAIVNLLQLMPGEKISAVIPIEKYNDDEYLLMATKKGLIKKTPIK 632

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L+A+  +E D L    +  +   + +++  G+       ++         +
Sbjct: 633 EYANVRKTGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRPTGRTSMGV 692

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  ++ ++ ++   +     +LL+VS  G        E  A  R GK        EK 
Sbjct: 693 RGMNLVDRDE-VIGMQIDSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITEKT 751

Query: 651 KLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             VV V      + + ++     ++    D I E+ R   GV+L +  +G     I 
Sbjct: 752 GNVVGVKAVDEDNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIA 808


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    L  ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/763 (31%), Positives = 409/763 (53%), Gaps = 34/763 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+GL     +K
Sbjct: 6   NEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNRPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD +VYD++VR+AQP+  RY ++ GQGNFG+IDGDS AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  ++++ VDF+  +++   EP V P+K PNLL NG SGIAVGMAT++  
Sbjct: 126 ARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATNMAP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+     A IDN +I++ +L+E+I  PDFPTG   +   + +  ++  GRG   +R
Sbjct: 186 HNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGA-AIYGYQGVKAAFETGRGRIVMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   ++VTEIPY V K+ +IEK A L+  K+I  + DIRDES  +   ++
Sbjct: 245 AKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   +   P++++ +++  + ++T F +N   L  G  P+ + L  ++K ++ HR +V+ 
Sbjct: 305 YEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKG-RPETLNLKDMIKHYVEHRHDVIV 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ + ++   +R  IL+G LIA  N+DE+I +IR    P   +  ++ +F L+E Q  A
Sbjct: 364 RRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDKFKLSEIQAKA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I  E + +    E ++S+L     + N I  E++E+++ +    
Sbjct: 424 ILDMRLQRLTGLEREKIIQEYEEIKKLIEYLESVLADEGLRMNIIKDEMQEIQDRYGDE- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E+  + +    + MI  E + + +S++G+I+              V    
Sbjct: 483 ----RRT---EIIHSAEEFTDEDMIPNEDVVITLSHQGYIKRTLLNEYKTQGRGGVGSKG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K+ D  ++   A T + +L+ +  GK Y +    L  G     G AIQ LI++    
Sbjct: 536 AGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEGSKTSKGRAIQNLINIESED 595

Query: 601 DIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +      +        +   L++ + KG                G   + ++  +++  
Sbjct: 596 SVRAVINVENLDDADYINNNFLVMCTEKGTIKKTTLEAYSRPRANGINAISINEGDRLLN 655

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGL 709
           V    GD ++ +   + + + F    +  M R   GVR  + KDG    V    I  E  
Sbjct: 656 VKLTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDGKDIVVEMVAITRENA 715

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     + KRGG G        ++G+ ++
Sbjct: 716 NLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTEKTGELVA 758



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 14/202 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
             L  A        V+ + +G I+     +        ++A+   EGD L      +  +
Sbjct: 604 ENLDDADYINNNFLVMCTEKGTIKKTTLEAYSRPRANGINAISINEGDRLLNVKLTNGDN 663

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSS 619
            I++ +  G+A      N+         ++  I L   +DIV     +      LLVVS 
Sbjct: 664 NIIIAARSGRAIRFHESNVRPMGRTAAGVRG-ITLKDGKDIVVEMVAITRENANLLVVSE 722

Query: 620 KGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           KG     +  +     R GK    +     + E + +   +  D + ++ ++   +  ++
Sbjct: 723 KGYGKRSDIEDYRITKRGGKGVKTLNVTEKTGELVAIKEVIDSDDLMIINKSGITIRMAV 782

Query: 676 DQIPEMSRGK-GVRLQSYKDGG 696
           + +  M R   GVRL    +  
Sbjct: 783 ESLRVMGRATQGVRLIKVNEND 804



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHT--TDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           +R +   +  +  +  K+G  + + + A T     +L++S  G        +    +  G
Sbjct: 682 VRPMGRTAAGVRGITLKDGKDIVVEMVAITRENANLLVVSEKGYGKRSDIEDYRITKRGG 741

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++ L       ++V       +  L++++  G    +    +    R   G   +KV+
Sbjct: 742 KGVKTLNVTEKTGELVAIKEVIDSDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVN 801

Query: 646 SEEKMKLVVKV 656
             + +  V KV
Sbjct: 802 ENDSISSVEKV 812


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/789 (33%), Positives = 416/789 (52%), Gaps = 66/789 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +SL   +++ YL+YA+S I  RA+PD+RDG KPVHRR+++AM+E+G  +   +KKSA
Sbjct: 8   ILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDS AA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +SEP V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E   A +ALIDNPE++I +L+E++ GPDFPT GI +   + I E+Y  GRG  ++RAR 
Sbjct: 188 NETVSACIALIDNPELTISELMEFLPGPDFPTYGI-INGTKGIREAYETGRGRVQMRART 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE    G   I+V EIPYQV K++LIE+IAEL+  K+I  +  +RDES +D   ++   
Sbjct: 247 SVETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIEV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P++L+ +++  + M+T F +NM  L   + P+++ L  +L+ ++ HRREV+ RR+
Sbjct: 307 KRGEVPEVLINNLYKQTTMQTVFGINMVALINSQ-PKLLNLKDVLEAFIRHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420
            + ++    +  IL+GL +A  NIDE+I +I+    P   K  M+ R             
Sbjct: 366 IYDLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEK 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL +RL  L  LE+ +I +E  +L+ + 
Sbjct: 426 VEMKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +   +L +  +    +  E++EV E F        RRT   E+  + +    + +I  E
Sbjct: 486 AEFLEILRNPDRLTEVVREELQEVVENFGDK-----RRT---EIDHSYQDIDAEDLIAVE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              V +S  G+I++         +      SA   KE D +   + A T D +L  S  G
Sbjct: 538 NRIVTLSRDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y      L   S    G+ I  ++ L   + I +      +     + + + +     
Sbjct: 598 KLYWQKTWQLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGYYVFMATKQSTVKR 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683
           V  S+       G   + +  ++++       G+  + +     K + F  + +  M R 
Sbjct: 658 VALSDFSRPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVMGRQ 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +GVR    KDG    +I  ++    T I  +    Y +           RGG G +  K
Sbjct: 718 ARGVRGMKLKDG--MSIISMQVARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIK 775

Query: 743 GFPRSGKFL 751
              R+G  +
Sbjct: 776 TSDRNGNVV 784



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      + L  +   +     + + +  ++ +      +  +  + A+   + D L   
Sbjct: 626 ETGEHITSILPVSEFSEGYYVFMATKQSTVKRVALSDFSRPRANGIIAVDLLDDDELVGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GKA      ++         ++ +  L     I++  V      +
Sbjct: 686 AITDGEQDIMLFSNIGKAIRFDENDVRVMGRQARGVRGM-KLKDGMSIISMQVARKDTLI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  +  G        +     R G+  + + + ++    +  V       V ++     L
Sbjct: 745 LTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRNGNVVYSVAVTPDQEVVLITNKGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLT 710
           +   + +I  + R  +GV+L +   G  +  +    + E   
Sbjct: 805 VRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDEL 846


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 401/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ EI  A        + D  E +IE++L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAE++  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    + ++ ++L+  ++  + ++  F + M  L     P+VM +  +L  +L H+ 
Sbjct: 306 MRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNE-PRVMNILDMLNYYLQHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  ++ RF L+E 
Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMERFGLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAILADRKLLLGVIKEEILIIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I KE + + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEFDISMEDLIPKEDVVITMTKLGYIKRMSHDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++     HT   I+  +  G+ Y +    +   S    G AI  L+ L
Sbjct: 537 GIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKGYEIPEASRTSRGTAIVNLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y     L + + KG       +E     + G   + +  E+++  V
Sbjct: 597 MPGEKISAVIPIEEYKDGEYLFMATKKGLVKKTPITEYAHVRKTGLAAITLREEDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                D  V +V +  + + F    +    R   GVR  +  D    +VI  ++  +G  
Sbjct: 657 KYTDNDRDVLLVTKYGQCIRFDEKDVRPTGRTSMGVRGMNLAD--RDEVIGMQLDSQGCD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITEKTGNVVG 756



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 12/210 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A +     +      + + +G ++              L+A+  +E D L    + 
Sbjct: 600 EKISAVIPIEEYKDGEYLFMATKKGLVKKTPITEYAHVRKTGLAAITLREEDELIEVKYT 659

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +LL++  G+       ++         ++ + +L    +++   +    C LL+V
Sbjct: 660 DNDRDVLLVTKYGQCIRFDEKDVRPTGRTSMGVRGM-NLADRDEVIGMQLDSQGCDLLIV 718

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIF 673
           S KG        E     R GK        EK   VV V      D V ++     ++  
Sbjct: 719 SEKGMGKRTSIEEFTCQNRGGKGVKCYKITEKTGNVVGVKAVNHDDEVMIINTEGIIIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             + I  + R   GV+L + ++G I   I 
Sbjct: 779 KCEGISVLGRVTSGVKLINLQEGDIVASIA 808


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/755 (35%), Positives = 406/755 (53%), Gaps = 30/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +  A KKSAR+
Sbjct: 4   QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL++GQGNFG+IDGDSAAA RYTE RM++
Sbjct: 64  VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   +  +D++ V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  +D+PE ++  L   + GPDFPTGG     R  + ++Y  GRG  ++R R  V
Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGR-GLRDAYETGRGTVKIRGRVEV 242

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE  +G   IV+ EIPY + KS L+EKIA L   +RI  + D+RDES      V+    R
Sbjct: 243 EERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKR 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + +ET F +NM    +G  PQ++ L  + + +L HRREV+ RR+ +
Sbjct: 303 GTIPEIVINQLYKYTPLETSFGINMLA-VVGNRPQLLTLKKVFECFLQHRREVIIRRTHY 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR    P   K  ++ RFSL+E Q  AIL++R
Sbjct: 362 DLRKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQRFSLSEVQAQAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E   S+L + +     I  E++E+KE ++       R
Sbjct: 422 LQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVLRGVIRDELKELKETYATP-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
           RT   E     +    + +I  E + + +S RG+I+          +     ++ +H  +
Sbjct: 477 RTEMLEDEL--EGIDIEDLIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGD 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
           GD ++  L       +LL +  G+ + L    +   S    G  I  L+ +  N+ + TA
Sbjct: 535 GDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTA 594

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L  + KG       S      R G   + +   +++ +V +V  +  V
Sbjct: 595 LTIREFTEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAVGLREGDELIMVREVDDNCEV 654

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL--TWIDSAGRS 718
            +  E    + F    +  M R   GV+  +      S V C  +  GL    +  +   
Sbjct: 655 VLTTEKGIAIRFGCGDVRPMGRSATGVKGIALSQDD-SVVACVTVQGGLESEIMTVSRYG 713

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +        +  RGG G +  K  P++G+ L +
Sbjct: 714 YGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGA 748



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E +      L      +E   +  + +G ++        K+    L A+  +EGD L + 
Sbjct: 586 EENEWVNTALTIREFTEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAVGLREGDELIMV 645

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TC 612
                   ++L +  G A     G++         ++  I L+ +  +V           
Sbjct: 646 REVDDNCEVVLTTEKGIAIRFGCGDVRPMGRSATGVKG-IALSQDDSVVACVTVQGGLES 704

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
           +++ VS  G             +R GK  +       + E +  +  V+ D + ++    
Sbjct: 705 EIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGAMTVVSNDQLILLTSTN 764

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           K++   + ++  + R   GVRL    +G    V+ F 
Sbjct: 765 KIIRIGVKEVRSVGRATQGVRLVWLDEG--DHVVGFD 799


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/768 (31%), Positives = 393/768 (51%), Gaps = 38/768 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 22  VSHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 82  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 142 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 201

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I ++YR GR
Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQSGIQDAYRTGR 260

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ 
Sbjct: 321 RTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVE 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    +
Sbjct: 380 HQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEI 439

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+ 
Sbjct: 440 DEIQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDILAKPERQRRIVSEELGEIV 499

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
             +        RRT        D     + +I +E + V I+  G+         RS + 
Sbjct: 500 AKWGDE-----RRTKII---PFDGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRR 551

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +S    ++ D +       T D IL  +  G+ Y   A  L        G+ +  L
Sbjct: 552 GGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANL 611

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +    ++ I       +      L++ +  G        E  +N   G   + +  E+++
Sbjct: 612 LAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDEL 671

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
                V   D + +V +N + + F+     +  M R   GV    + D    +++  ++ 
Sbjct: 672 VGAALVGPTDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDE--DELLAMEVV 729

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EGL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 730 REGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 615 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTC 612
                TD +LL+S + +A    A +  + R  G A   +I +      +++   V     
Sbjct: 675 ALVGPTDDLLLVSKNAQAIRFNATD-EALRPMGRATSGVIGMRFSDEDELLAMEVVREGL 733

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 734 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNG 793

Query: 669 KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            ++   +  +     R   GV+L    DG     I     E
Sbjct: 794 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 400/775 (51%), Gaps = 38/775 (4%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++   TL  E   ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 1   MTQDTTLPPEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + K AR+VG+VIG  HPHGD +VYD+LVRLAQP+V R+PL+ GQGNFG+   
Sbjct: 61  GGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+T +A  +L+ + ++ VDF   Y+    EPV+ P++FPNLL NG++GI
Sbjct: 121 DPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+   A   +++P+ + E+    LLE I GPDFPTGG+IV     I
Sbjct: 181 AVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIV-GHAGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+YR GRG   +RA   VEE  RG   +VVT++PYQV    L  +IAEL+   RIP + 
Sbjct: 240 EEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIA 299

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           DIRD+ S+   + ++    R   P +++ +++  + ++  F  NM  L    VP+ + LD
Sbjct: 300 DIRDDSSSRTGQRLVISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDN-VPRTLSLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
             ++ W+AH+ +V+ RR+ + ++  +RR  IL+GL+ A   +D +IA+IR     D+ + 
Sbjct: 359 AFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARS 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q  AIL+++LR L  LE   I  +L    AE   ++ +L +  +Q   +
Sbjct: 419 GLMELLDVDEVQATAILDMQLRKLAALERQAIIDDLAKHEAEIADLNDILANESRQRAIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------ 529
           + E++E+ + +        RRT       AD     + +I +E + V I+  G+      
Sbjct: 479 SEELKEIVDKYGDE-----RRTAIV---PADGDVSIEDLIAEEDVVVTITRGGYAKRTKT 530

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
              RS +     +     ++ D ++      T   +L  +  G+ Y L A  +       
Sbjct: 531 SLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAARSA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I        YD+   L++ +  G        E  +N   G   +
Sbjct: 591 RGQHVANLLAFQPDEKIAQVLALRDYDAAPYLVLATRSGLVKKTALREFDSNRTGGIIAI 650

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGIS 698
            +  ++ +     V+  D + +V    + + F  D   +  M R   GV    + D   +
Sbjct: 651 NLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEALRPMGRATSGVIGMRFHDDD-A 709

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    +        +  + Y +        L  RGG G +  K     G  + +
Sbjct: 710 LLAMMVVRPQAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITAERGDLVGA 764



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 14/203 (6%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++       D +      A++ ++ D +  A      D +LL+S   +A
Sbjct: 620 PYLVLATRSGLVKKTALREFDSNRTGGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQA 679

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A   +I +    +  ++   V      + V ++KG A      E
Sbjct: 680 IRFRADD-EALRPMGRATSGVIGMRFHDDDALLAMMVVRPQAYVFVATTKGYAKRTPIEE 738

Query: 631 IIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G   +          +   + V   D V  +     ++   + ++   SR   
Sbjct: 739 YPLQGRGGYGVITAKITAERGDLVGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATM 798

Query: 686 GVRLQSYKDGGISDVICFKICEG 708
           GVRL    +      I      G
Sbjct: 799 GVRLMDLAENDALVAITRNAERG 821


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 395/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVVTE+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMSADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 407/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQ+ K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/792 (32%), Positives = 412/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++HAM+ +  D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ V+F D Y+  +  P V P++ P+LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALI+NPEI ++ L++YI GPDFPT  + +  R+ IV++YR GRG  ++RA
Sbjct: 186 NLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAAL-INGRDGIVDAYRTGRGRIQMRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   E +   G   I+ TEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   ++
Sbjct: 245 RHHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++ ++F  + ++T F +N   L  G+ P+++ L  +L+ ++ HRREV+ 
Sbjct: 305 VELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQ-PKILNLKDMLEAFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NID +IA I+                         
Sbjct: 364 RRTIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL++RL+ L  LE  ++  E    + 
Sbjct: 424 LERAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVD 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  +   +L S ++    I  E+  +K+ +              E+    +    + +I 
Sbjct: 484 EIAEYLQILASHERLMEVIREELESIKDEYGDG--------RLTEIVETRRHLTMEDLIA 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+ +          +      SA   K+ D ++  L A+T D IL  S 
Sbjct: 536 EEDMVVTLSHGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L   ++   S +  G  I  L+ L  ++ I T      Y     + + +SKG  
Sbjct: 596 AGKVYWLKVYDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
              + +        G   L++   + +       G+  V ++ +  K + F+   +  M 
Sbjct: 656 KKTDLTAFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR    +D     V      EG T + ++   Y +  +        RG  G +  
Sbjct: 716 RTARGVRGIKMQDDQ-KVVSLMIPKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVIGM 774

Query: 742 KGFPRSGKFLSS 753
               R+GK + +
Sbjct: 775 VTNDRNGKLVGA 786



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 86/243 (35%), Gaps = 12/243 (4%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E        L      +     + +++G ++        +  S  L AL  +EGD+L  A
Sbjct: 626 EQDEWITTILPVREYTEGHYIFMATSKGTVKKTDLTAFSRPRSSGLIALELEEGDTLMGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   +LL+S  GKA      N+ +       ++  I +  +Q +V+  +      +
Sbjct: 686 EITDGNQDVLLMSDVGKAVRFAESNVRAMGRTARGVRG-IKMQDDQKVVSLMIPKEGATV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S  G     +  E     R  +  + + + ++    +  V    G+ + ++     L
Sbjct: 745 LTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRNGKLVGAVQVFDGNEIMLITNQGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +   + ++  + R  +GV L   ++G     I   + E              +E+D    
Sbjct: 805 VRTRVSEVSTLGRNTQGVTLIRVQEGERLVGIAPIMDEDEDMDSVVNEQTLPAEDDSEEA 864

Query: 730 LGK 732
            G+
Sbjct: 865 SGE 867


>gi|332980612|ref|YP_004462053.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
 gi|332698290|gb|AEE95231.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON]
          Length = 809

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/756 (32%), Positives = 420/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 8   KVIEVNLEEEMKHSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLMPDKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHG+ +VYDS+VR+AQ F  RYPL+ G GNFG+ID D  AA RYTEAR
Sbjct: 68  ARIVGDVLGKYHPHGEAAVYDSMVRMAQDFSMRYPLVDGHGNFGSIDNDPPAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D++ VDF   ++E   EPVV PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 128 LSRLAMEMLTDIDKETVDFIPNFDETLKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E  +AA+ +ID+P+ISI++L++ + GPDFPTGGII+  R+ I ++Y  GRG  +VR +
Sbjct: 188 LKETIDAAIKVIDDPDISIDELMKTLKGPDFPTGGIIM-GRDGIKQAYHTGRGRIKVRGK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPYQV K+ L+ +IA L+  K+I  + DIRDES ++   +   
Sbjct: 247 TSIEPLPGGRSRIIVTEIPYQVTKADLVVQIANLVKDKKIDGIADIRDESDKEGMRIAID 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++++  ++  + +E  F + M  L   + P+V+ +  +   ++ H+++V+ RR
Sbjct: 307 LKRDVNPNVVLNLLYKHTRLEDTFGIIMLALVDNQ-PKVLNIKQMFYYYIDHQKDVIVRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S + ++  + R  IL+GL IA  +ID I+A+IR+       K  ++S+F+L++ Q  AIL
Sbjct: 366 SRYDLEKAEARAHILEGLRIALDHIDAIVALIRSSKTDQIAKEALMSQFNLSDKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RLR L  LE  +I+ E   L++  E +  +L+     +  I  E++ ++  +      
Sbjct: 426 DMRLRRLTGLERDKIEEEYAQLMSTIEYLRRVLSDEGMVYKIIKDELKTIRNKYGD---- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   ++S        + +I+ E + + +++ G+I+          +     ++ + 
Sbjct: 482 -DRRT---QISSKADEMEIEDLIQDEEVAITLTHFGYIKRLPLDTYKSQRRGGKGITGMQ 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            ++ D ++      T   +L  +  GK Y + A ++     +  G AI  L++L+  + I
Sbjct: 538 TRDEDFVEHIFVTSTHSYMLFFTNKGKVYMMRAYDVPEAGRQAKGTAIINLLNLSGGEKI 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                    D    L++ + +G        E     + G   + +   +++  V    G+
Sbjct: 598 SAVIPIRHIDDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGEGDELIGVELTNGE 657

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
             V +  +    + F  D +  M R  +GV+      G    VI  + + E    +  + 
Sbjct: 658 NEVIISTKEGMAIRFPEDDVRSMGRTARGVKAIKLNQG--DKVIDMELVDESADLLMVSE 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G +  K   ++G   +
Sbjct: 716 NGYGKRTPLKEYRSQSRGGKGIITMKITEKTGPLAA 751



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + E   ++ +  G+I+       D      L A+   EGD L      +  + +++ + +
Sbjct: 607 DDEKYLIMTTREGYIKKTSIEEYDNIHKNGLMAIGLGEGDELIGVELTNGENEVIISTKE 666

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G A   P  ++ S       ++  I LN    ++   + D +  LL+VS  G        
Sbjct: 667 GMAIRFPEDDVRSMGRTARGVKA-IKLNQGDKVIDMELVDESADLLMVSENGYGKRTPLK 725

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           E  + +R GK  + +   EK   +  +      D + +V  +  ++   +  IP   R  
Sbjct: 726 EYRSQSRGGKGIITMKITEKTGPLAAIKVVHEDDEIMMVTSDGIIIRLEVKGIPVQGRNT 785

Query: 685 KGVRLQSYKDG 695
           +GV L   ++G
Sbjct: 786 QGVTLMKVENG 796


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  +++R+ L+E Q 
Sbjct: 359 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          +     +
Sbjct: 479 E-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T       +D    L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQAEHDDNSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+  Q+  M R   GVR  + + G    V    I +    +
Sbjct: 652 LTNGQADIIIGTKMGYAVRFNESQVRNMGRAATGVRGVNLRAGDHV-VGASVISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYATKSRGGKGMKTANITEKNGPLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 12/228 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          QA  +        +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGETIQTIINVQAEHDDNSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G A       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTNGQADIIIGTKMGYAVRFNESQVRNMGRAATGVRG-VNLRAGDHVVGASVISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE    +R GK     +  EK   +  ++ V GD  + ++    
Sbjct: 708 EVLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKNGPLAGLMAVNGDEDLMIITNTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            ++  ++  I +  R   GV++     G           E    +D  
Sbjct: 768 VIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVDEG 815


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 412/764 (53%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G     IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 404/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  ++++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E  G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASIVLNKLYKMTMLQTSFGVNNVALV-HGRPRLLNLKDLIKHFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 413/764 (54%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 412/764 (53%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y ++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 14/236 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +  I +  R   GVRL    D      +     +     +   +S +    D
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSED 831



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVTGD 659
           + +  V KV  D
Sbjct: 802 QFVSTVAKVKED 813


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/759 (36%), Positives = 444/759 (58%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V  V  D
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  +
Sbjct: 650 WLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL-VL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 709 QAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/780 (29%), Positives = 388/780 (49%), Gaps = 43/780 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+  + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++++ E I+  +D+D VD  + +++  +EP V P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +   A IDNPEI  E L++YI  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGA-YIYGIQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IVVTEIPY V K +LIE IAEL+   +I  + ++ DE+
Sbjct: 240 GRGRVVMRAKAEIE-SDESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS------MGRVPQVMPLDG 359
                 ++    R  +  +++  +F ++ +++ F +N   L           P+++ L  
Sbjct: 299 GRQGMRIVVDVKRDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
            +  ++ HR EV  RR+ F ++    R  ILKGL+IA  NIDE++ IIR    P      
Sbjct: 359 CISYFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQAN 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              RF L   Q  AI+++RL  L  L   Q+ +E ++L+   +++ S+L+  ++    + 
Sbjct: 419 LEKRFELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVMK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E++ VK  +        RRT        +     +     +P+ + +S+ G+I+     
Sbjct: 479 TELQAVKAKYGDE-----RRTRII---LDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                    V     H ++ D  +    A     ++  +  G+ Y L   ++  G     
Sbjct: 531 DFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPEGDKTSK 590

Query: 587 GEAIQLLIDLNHNQDIVTAF----------VYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           G AIQ L++++ +  +               + ++  ++  +  G        E      
Sbjct: 591 GRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNGTVKKTNLKEYSRPRA 650

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   + +   +++  V    G + + +   N + + F    I  M R   GVR     D
Sbjct: 651 NGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRSMGRVSTGVRGMRIDD 710

Query: 695 GG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G  +  +I     E  T +  +   Y +  +        RGG G        ++G+ ++
Sbjct: 711 EGDAVVGMIVVNNAETETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITEKTGRLVA 770



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 81/205 (39%), Gaps = 15/205 (7%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
           +          V  +  G ++              + A++  EGD +      +  + ++
Sbjct: 618 EDEEFVNSHYVVFATKNGTVKKTNLKEYSRPRANGVIAINIVEGDEVVDVRLTNGNNELI 677

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGN 622
           L + +G+A       + S       ++ +   +    +V   V +   T  ++VVS +G 
Sbjct: 678 LANRNGRAVRFDEQAIRSMGRVSTGVRGMRIDDEGDAVVGMIVVNNAETETVMVVSEEGY 737

Query: 623 AFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
               + ++     R GK    + ++ +  ++  +  VT +  + ++ ++  ++  ++ ++
Sbjct: 738 GKRSDVADYRKTNRGGKGVKTMSITEKTGRLVAIKNVTDENDLMIINKSGIVIRLAVAEV 797

Query: 679 PEMSRGK-GVRLQSY--KDGGISDV 700
             M R   GVRL +   K+  I+ V
Sbjct: 798 RVMGRATQGVRLINLARKNDTIASV 822


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/766 (30%), Positives = 396/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + ++  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       IL+ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPNS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/766 (30%), Positives = 396/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       IL+ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/790 (31%), Positives = 401/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IAII+    P   K  ++++                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+ +VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITTLIGDELTQVKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     D      +     E  + + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 639 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 698

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 699 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 758

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 759 GRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 818

Query: 690 QSYKDG 695
            S  +G
Sbjct: 819 ISLDEG 824


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L+DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G    V    + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHL-VGATIVSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 18/224 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                +      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G     +  I L     +V A +   
Sbjct: 649 NVFLTDGQADVIMGTKFG--YSVRFAE-TDVRNMGRTATGVRGIKLREGDHLVGATIVSD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +
Sbjct: 706 DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITD 765

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              ++  SI  I +  R   GV++    +   + ++ F + +  
Sbjct: 766 TGVIIRTSIANISQTGRSTMGVKVMRLDEE--AKIMTFALVDAA 807



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R+  L+  E  +       L            S +   N    +  +    F+    +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTIINVTKDQTADHYLFFATRQGI-V 620

Query: 495 RRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           +RT   E S              D   +   + + +   ++ +  G+        +R++ 
Sbjct: 621 KRTNVNEFSNIRQNGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG 680

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  +  +  +EGD L  A        +L+LS +G     PA    +    G+ I  L 
Sbjct: 681 RTATGVRGIKLREGDHLVGATIVSDDQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLK 740

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             + N  +           ++V++  G       + I    R   G   +++  E K+  
Sbjct: 741 VADKNGPLAGLTTVQGDEDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMT 800

Query: 653 VVKVT 657
              V 
Sbjct: 801 FALVD 805


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/760 (34%), Positives = 406/760 (53%), Gaps = 31/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    V  ++L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+AM  +G+    A
Sbjct: 1   MSAGKVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KK A IVGEV+ K HPHGD +VYD+LVR+AQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKCAHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT++A  +L  ++++ VDF   Y+E   EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARMTKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + L+DNPE     L++ + GPDFPT G I+   + I+ +Y  GRG  +
Sbjct: 181 PPHNLAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIM-GVQGIISAYTTGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVV EIPYQV K+RLIEKIAEL+  K+I  + D+RDES      
Sbjct: 240 IRAQAEIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R + P L++  ++  + M+  F + M  L  GR   V+ L  +L  +L H++++
Sbjct: 300 IVIELKRDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPN-VLNLRDMLYYYLEHQKDI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR++F ++  + R  I++GL IA  N+DE+I  IR+       K  +V +F LTE Q 
Sbjct: 359 IIRRTTFDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEKFLLTEIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL +RL+ L  LE  +++ E  +L+ +   ++++L+   +    I  E+ E+++ ++ 
Sbjct: 419 QAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT     S  D A   + +I +E + + I+  G+I+          K     +
Sbjct: 479 K-----RRTVI---SDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLDTYRSQKRGGRGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
           SA+  KE D LK      T   IL  +  GK Y L    +     +  G AI  L+ +  
Sbjct: 531 SAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKGTAIINLLFVGT 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + + T      ++    L + +  G       +E   + R G   L +   + +  V  
Sbjct: 591 EEKVTTVIPVKEFNKDEFLFMCTKNGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRL 650

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWI 712
             G    ++  +    + FS D + ++ R  KGVR     +G    V+           +
Sbjct: 651 TNGQEEIIIGTQKGLAIRFSEDDVRKLGRIAKGVRGIGLIEG--DFVVGMDTVRNEGDLL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +        L  RGG G +  K   R+G  +S
Sbjct: 709 VVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRNGPVVS 748


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/765 (33%), Positives = 409/765 (53%), Gaps = 31/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                  N+  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+  
Sbjct: 3   DQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD+SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA
Sbjct: 63  NKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++ + +L  +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+C     LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG
Sbjct: 183 TNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RAR  +EE+ +G   IVVTEIPYQV K+R+IE IA L   K I  +  +RDES   
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++      + PD+++  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F +   + R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RLR L  LE  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ 
Sbjct: 421 KQAVAILDMRLRRLTGLEREKIEDEYKELLALIEDLKAILASEARQRQIIKDELDDMKKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RR+   E++        + +I  E + + ++ +G+I+        +     
Sbjct: 481 YGDP-----RRS---EITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLI 594
             +  +  KE D +   +H  T + +L  ++ G+ Y L A  +    S    G A+  ++
Sbjct: 533 AGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T    +       L +V+  G        E     R G   + +   +++ 
Sbjct: 593 PLAVGESVTTMIDLERIHENVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDDGDRLI 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-- 707
            V+  TG+   ++G      +  + + +  M R   GVR    K G +         +  
Sbjct: 653 SVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESDES 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +   Y +        + KRGG+G+   +   ++G  ++
Sbjct: 713 EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVA 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 16/225 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  +G
Sbjct: 593 PLAVGESVTTMIDLERIHENVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDDG 648

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L   +       IL+ +  G A      ++   +     ++  I L     +V A V 
Sbjct: 649 DRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRG-IKLKTGDVVVGAGVL 707

Query: 609 DST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHV 661
           +S     ++  +S +G     E        R G         +K   VV V      D V
Sbjct: 708 ESDESEAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRINDKTGDVVAVEVVHNDDEV 767

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICF 703
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G     I  
Sbjct: 768 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEGDKVASIAV 811


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 396/766 (51%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M E+G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEA+M+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG SGIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+DNP+++ + L++ I GPDFPTGGI++  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   IVV+E+PY V KS L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPH-FLTLKQMLEYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F ++  + R  IL GL IA  +IDEII II   +N D  K  ++  F 
Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +I++E  +L A+      +L   ++    I  E+ ++
Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT   E      +   + +IE++ + + +++ G+I+           
Sbjct: 479 QKRFGD-----DRRTKIAEGE--AVSIEDEDLIEQKDVLLTLTHNGYIKRMPADEFKVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++ D +   + + T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I              L  V+  G     + SE     R G   L +   ++
Sbjct: 592 LLELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V+   I E
Sbjct: 652 LNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRDNDY--VVGSDILE 709

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAG 755



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +       +     ++  G ++  K           L AL  ++GD L 
Sbjct: 594 ELDKGEKIQAVINVPEGADDNYLFFVTKMGTVKRTKVSEFQNIRRSGLIALTLRDGDELN 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       IL+ +  G A T    ++ S       ++  I+L  N  +V + + +   
Sbjct: 654 NVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRG-INLRDNDYVVGSDILEPDS 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV+S KG       SE     R GK     +  EK   +  V  V GD  + ++    
Sbjct: 713 EVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVVNGDEDIMLITSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            ++ F +D + +  R   GVRL    DG     I 
Sbjct: 773 VMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASIT 807


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/765 (31%), Positives = 408/765 (53%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG+IDGDSAAA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +A IDN EI ++ L++YI  PDFPTGG  +     + ++Y  GRG   +R
Sbjct: 184 HNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGG-YIYGISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E        IVVTEIPY V K+ LI+ IA+L   K+I  + ++ DE+  +   ++
Sbjct: 243 AKAEIESHPT-HDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR EV+ 
Sbjct: 302 IDIKRDANASVVLNKLYKMTMLQTSFGVNNVALV-HGRPRLLNLKELIKYFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   ++RF+L+E Q  A
Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMARFNLSEIQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E ++L+ +    + +L++ +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILSNEELCKKVIKDELLEVKEKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  A +    +     + + + IS+ G+I+              V    
Sbjct: 479 ---NRRS---EIVYASEEFNPEDFYADDEMVITISHMGYIKRTPLSEFRAQNRGGVGSKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              +  D ++    A   + +L  +  GK Y L    +  G     G AIQ L+++  + 
Sbjct: 533 SETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIEADD 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  +L  +  G        +     + G   + +  ++++  
Sbjct: 593 VVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIE 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICE 707
           V    G + + +   N + + F    + EM R   GVR  +  + G  +V   IC K  E
Sbjct: 653 VRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPE 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +  +        RGG G        ++G  ++
Sbjct: 713 TETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGSLVA 757



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 68/187 (36%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI 631
                +         ++ +      QD V   +      T  ++VVS  G     +  + 
Sbjct: 674 FHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPETETIMVVSENGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGSLVAIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL   +
Sbjct: 794 VRLIDLE 800


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/755 (34%), Positives = 401/755 (53%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K   +   +   +L Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA
Sbjct: 81  LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
             VGEV+GK HPHGD ++YDS+VR++Q F  R PLI G GNFG+IDGD  AA RYTEAR+
Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  ++++ VD +  Y+E  +EP V P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA   +IDNP+++ E+L+E + GPDFPTGGII+   + I ++Y  GRG   VRA+ 
Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIM-GTQGIKDAYETGRGSITVRAKV 319

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE    G   +VVTEIPYQV K  L EKIA+ +  K+I  + D+RDES      ++   
Sbjct: 320 HVESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 379

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++ +++  + +++ F +    L  G VP+ + L  IL+ ++ H+ +V+ RR+
Sbjct: 380 KRGEVPQVVLNNLYKRTQLQSNFGIIDLALVDG-VPRTLSLREILRCYIDHQIDVVRRRT 438

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F +    +RV IL+GLL A  NIDEI+ IIR+     + K  M  RF L + Q +AIL 
Sbjct: 439 EFDLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHERFDLDDIQGEAILQ 498

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  L    +  E+  L  +    + LL    +    IA E+R++   FS      
Sbjct: 499 MRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSNK---- 554

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   +    +     + +I +E + V +++ G+++          K     +  +  
Sbjct: 555 -RRTQISDQDVQNLDV--EDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSL 611

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIV 603
           KE D ++    A T D +L  +  GK Y +    L  G     G AI  ++ L+  + I 
Sbjct: 612 KENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTKGNAIVNVLSLSEGEKIA 671

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                  + +   L+  + +G       SE     + G   + +   +++  V +V  GD
Sbjct: 672 AVITTRDFPAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDELVNVRRVHPGD 731

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG-LTWIDSAGR 717
            V +   + K ++F   Q   M RG  GVR    K  G + ++  +I  G         +
Sbjct: 732 KVILCSSDGKAILFDESQARAMGRGTSGVRGIMLK--GEATMLGMEITNGNGDLFVITEK 789

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +          KRGG G        + GK ++
Sbjct: 790 GYGKRTAVSEYPEHKRGGQGVFTITMTAKKGKLVA 824



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
           +  E  +       +     E   +  + +G ++       D +      A++ K+GD L
Sbjct: 663 SLSEGEKIAAVITTRDF-PAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDEL 721

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
                 H  D+++L S+DGKA           R  G     +  I L     ++   + +
Sbjct: 722 VNVRRVHPGDKVILCSSDGKAILFDESQ---ARAMGRGTSGVRGIMLKGEATMLGMEITN 778

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDH-VAVVG 665
               L V++ KG       SE   + R G+    +   + + K+     V   H + ++ 
Sbjct: 779 GNGDLFVITEKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKGKLVACRVVGPQHEIMIMS 838

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           E   ++      I ++ R  +GV++ +         I 
Sbjct: 839 EEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIA 876


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S +G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSLQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/766 (31%), Positives = 399/766 (52%), Gaps = 38/766 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV P+++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + +IE+LLE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D S+ + 
Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVMPLDGILKEWLA 366
             +     +  + ++++  ++  + ++  F + M  L        P+V+ L  +LK +LA
Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKYYLA 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ + +     R  IL+GLL A  NIDE+I IIR        K  ++ RF L
Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q  AI+++RLR+L  LE  ++++E   L+ +  K+ ++L         I  EI  + 
Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAILADRNTLLRVIREEILAIS 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +        RRT              + MI +E   + ++  G+I+            
Sbjct: 486 EKYGD-----DRRTAIG---FDAYDISMEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
               +  +   + D ++  +   T   ++  +  G+ Y L A  +        G AI  L
Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L   + I        ++    L++ + KG        +     + G   + +  ++++
Sbjct: 598 LQLMPGERITAVIPISKFEEGHYLMMATRKGLVKKTPIQDYANVRKIGLAAISLRDDDEL 657

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CE 707
             V        V +V +  + + F    +    R   GVR  +  DG   +V+  ++  +
Sbjct: 658 IEVKATNDKKDVILVTKYGQCIRFKETDVRSTGRVSMGVRGINLLDG--DEVVAMQLNTQ 715

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +     +  +        RGG G    K   ++G  + +
Sbjct: 716 GYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIGA 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +  +  E+    ++ + +G ++      
Sbjct: 578 KAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGHYLMMATRKGLVKKTPIQD 637

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  ++ D L      +    ++L++  G+       ++ S       ++
Sbjct: 638 YANVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRSTGRVSMGVR 697

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L+ ++ +V   +      LLVVS  G       SE     R GK        EK  
Sbjct: 698 GINLLDGDE-VVAMQLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITEKTG 756

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            V+        + + ++     ++      I  + R   GV+L +  DG 
Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGV 806


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/761 (33%), Positives = 413/761 (54%), Gaps = 32/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            +    V  V +   ++  YL YA+S I  RA+PD+RDG KPV RRI++A+ ++G+    
Sbjct: 4   DINNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNK 63

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG+IDGDSAAA R
Sbjct: 64  PHKKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L+ +D++ VDF   ++E   EP V P++ PNLL NG SGIAVGM+T+
Sbjct: 124 YTEVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTN 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALIDNP++ ++ L++ I GPDFPTGGII+  ++ I ++Y+ GRG  
Sbjct: 184 IPPHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIM-GKDKIYQAYKTGRGRL 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR +  +EE   G   I++TEIPYQV K+RL+EKIA L+  ++I  + D+RDES     
Sbjct: 243 KVRGKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGL 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +   P +++  ++  + ++  + + M  L  G  P+V+ L  +L  +L H++E
Sbjct: 303 RIVIELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGM-PRVLTLKELLNHYLEHQKE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +++   + R  IL+GL IA  NID+I+ +IR     D  +  ++  F+LTE Q
Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL +RL+ L  LE  +I++E   L  +     S+L    +    I  E+ E+KE F 
Sbjct: 422 AEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQ 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+S        + +I +E + + +++ G+I+          +     
Sbjct: 482 DE-----RRT---EISIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  ++ KE D ++      T    L  +  GK Y L    +   S +  G AI  L++L 
Sbjct: 534 IIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELE 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T      +D    L++V+  G       +E  +    G   L +  E+++  V 
Sbjct: 594 EEERITTVIPIREFDEERYLVMVTRNGMIKKTPLAEYES-RYTGLIGLTLRDEDELIDVK 652

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
              G+  V +V    K + F  +++  M R   GV+  + +DG    V+   +  EG   
Sbjct: 653 YTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDGDY--VVGMGVDSEGDDL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +        L  RGG G +      ++G    
Sbjct: 711 LVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAG 751



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 11/193 (5%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS-----ALHFKEGDSLKIALHAHTTDRILLLST 568
             ++E   V+++  G I+       +        L  ++ D L    +      +++++ 
Sbjct: 606 EFDEERYLVMVTRNGMIKKTPLAEYESRYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTH 665

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA       + S       ++  I L     +V   V      LLV++ KG       
Sbjct: 666 RGKAIHFKENEVRSMGRTAMGVKA-ITLEDGDYVVGMGVDSEGDDLLVITEKGYGKRTPL 724

Query: 629 SEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG 684
            E    +R GK  +  +  EK   +  V  V  DH + ++     ++   ++ I  + R 
Sbjct: 725 EEYRLQSRGGKGLITANITEKNGNLAGVKVVREDHDLILITSEGIIIRTRVEGISRLGRN 784

Query: 685 K-GVRLQSYKDGG 696
             GV++   ++G 
Sbjct: 785 TLGVKVIRLEEGD 797


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/757 (36%), Positives = 448/757 (59%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEILKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNLRALLL 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR   R++ ++RR+ +L+GLL A+LN+DE+I IIR E+ PK  +++RF 
Sbjct: 356 EWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQALIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLLALLGSDAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I EG T +
Sbjct: 650 WLAAVTTEGRLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEYVTDLAV--IPEGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             AG R+ +   +DL  + G+RG  GS +P+GF R  
Sbjct: 708 LQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQRVD 744


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 402/757 (53%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  +KK
Sbjct: 4   EKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V P+  PNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +ALI+NPEI I  L++++  PDFPTGGI +   E + ++Y  GRG   +RA
Sbjct: 184 NMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGI-IYGYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  +   ++
Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I+ IR        +  ++ RF LTE Q  A
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDRFGLTEAQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    LA  E++ S+L S  +Q   I  E+ +V +++    
Sbjct: 422 ILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESPAKQMEIIKAELLKVSDVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---ELRPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQHRGGRGVAG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L   +
Sbjct: 534 AQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAARGRSLANIMELPPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++KG        E     R G   + +   +++       
Sbjct: 594 KIRTYINVRNFDDPHFIIMATAKGIVKKTSLEEYSHPRRTGINAITIDEGDELIEARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GDH + +   +   + F   ++  M R   GV+  +  +      +        + +   
Sbjct: 654 GDHQIILAKSSGYAVRFPESEVRSMGRTAMGVKGITLDEDERCISMVTTKRNDTSLLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        + KRG  G +  K   + G  + 
Sbjct: 714 DNGYGKRSKVEDYRMTKRGARGVITIKAHEKIGNLVG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 71/200 (35%), Gaps = 13/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +     ++ + +G ++              ++A+   EGD L  A       +I+L  +
Sbjct: 604 FDDPHFIIMATAKGIVKKTSLEEYSHPRRTGINAITIDEGDELIEARLTDGDHQIILAKS 663

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVE 627
            G A   P   + S       ++  I L+ ++  ++      +   LL V+  G     +
Sbjct: 664 SGYAVRFPESEVRSMGRTAMGVKG-ITLDEDERCISMVTTKRNDTSLLAVTDNGYGKRSK 722

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R  +  + + + EK+  +V +      D + ++  N  ++   +  I  + R
Sbjct: 723 VEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLIIITTNGIVIRQHVSDIRVLGR 782

Query: 684 GK-GVRLQSYKDGGISDVIC 702
              GVRL     G       
Sbjct: 783 NTSGVRLIRLDAGDRISATA 802


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/764 (31%), Positives = 390/764 (51%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ V ++  L+  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 13  ERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D AAA RYTE 
Sbjct: 73  CARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTEC 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L+ +D++ VDF   Y+   +EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 133 RLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +DN  +S E+LL    E I GPDFPT  +IV  R+ I ++YR GRG  
Sbjct: 193 NLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIV-GRKGIEDAYRTGRGSI 251

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE S    
Sbjct: 252 TMRAVVEIEEI-QGRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    +     +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 311 QRLVIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLRLDQFIRYWVDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TEN 426
           +V+ RR+ F ++  + R  IL+ LL A   I+E+IA+IR  +  +       +L    E 
Sbjct: 370 DVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLMALLQIDEV 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE   I  E + L+AE    + +L S ++Q   +  E+  + E +
Sbjct: 430 QAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEILASPERQRRIVREELEPIVERY 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        D     + +I +E I V I+  G+         R  K    
Sbjct: 490 GDE-----RRTQIV---PFDGDVSYEDLIPEEDIVVTITRGGYAKRTRVDAYREQKRGGK 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +     K+ D ++      T   +L  +  G+ Y   A  L  G     G+ +  ++  
Sbjct: 542 GVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGGRDSRGQHVANMLAF 601

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        YD    L++ + +G        +  +    G   + ++  +++   
Sbjct: 602 QPEEHIAEVLDLRDYDVAPYLVLATRQGKVKKTALKDFDSPRTGGIIAINLAEGDEVIAA 661

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             V   D + +VG N + + F  D   +  M R   GV    +  G + D+   +  +  
Sbjct: 662 RLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDED 721

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + + G  Y +        +  RGG G L  K     GK + +
Sbjct: 722 VLVATEG-GYAKRTPVEQYPVQGRGGKGVLTAKIVQARGKLVGA 764



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 20/252 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     +  P  V+ + +G ++      
Sbjct: 579 KAYELPEGGRDSRGQHVANMLAFQPEEHIAEVLDLRDYDVAPYLVLATRQGKVKKTALKD 638

Query: 538 VD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            D      + A++  EGD +  A     TD +LL+ T+ +A    A +    R  G A  
Sbjct: 639 FDSPRTGGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADD-EQLRPMGRATS 697

Query: 592 LLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSS 646
            +I +  +    +    + D    +LV +  G A      +     R GK  L    V +
Sbjct: 698 GVIGMRFDTGHLLDMHVIRDGDEDVLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKIVQA 757

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
             K+   + V   D V  +  N  ++  +  +I    R   GVRL +  +G     I   
Sbjct: 758 RGKLVGALMVRPEDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVAIARN 817

Query: 705 ICEGLTWIDSAG 716
           +   +     AG
Sbjct: 818 VESSMEEEPEAG 829


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/774 (30%), Positives = 391/774 (50%), Gaps = 38/774 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N+   +  + V ++  ++  ++ YA+S I  RA+PD+RDG KPVHRR+++ M + G
Sbjct: 1   MTGPNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +  KS+R+VG+V+G  HPHGD  +YD++VR+AQP+  RYP+I GQGNFG++  D 
Sbjct: 61  FRPDRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R+TQ+A L+L G+ E  VD    Y+ +  EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+  A +  ++NPE S E+L    +E I GPDFPTG +IV  ++ I +
Sbjct: 181 GMATNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIV-GKDGIAD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  R+RA   +EE  +G   +VVTE+PYQV    L+E IA L    +I  + DI
Sbjct: 240 AYRTGRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADI 299

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  + ++T F  NM  +  G VP+ + LD +
Sbjct: 300 ADESSDRIGMRLVITLKRDAVAKVVLANLFKHTALQTSFGANMLAIVDG-VPRTLRLDQM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           +  ++AH+ EV+ RR+ +R+   + R  IL+GL+ A   +DE+IA+IR        K  +
Sbjct: 359 ISLYVAHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q  AIL+++LR L  LE  +I  EL  L      +  +L   ++Q   I  
Sbjct: 419 MELLDVDEIQATAILDMQLRRLAALERQRIIDELAELERVIADLKDILAKPERQRAIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E  +          RRT        D     + +I  E + V I+  G+        
Sbjct: 479 ELTEAVDKHGD-----DRRTRLV---PYDGDVSVEDLIAVEDVVVTITRTGYAKRTKTDL 530

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            R+ +     +     K+ D +       T D IL  +  G+ Y   A  L        G
Sbjct: 531 YRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRNARG 590

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y +   L++ +  G     E +   +N   G   + +
Sbjct: 591 QHVANLLAFQPDERIAEVIQIPHYQAAPYLVLATKGGLVKKSELAAFDSNRAGGIVAVNL 650

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDV 700
             ++++   V    +  + ++    + + F      +  M R   GV    +  G   ++
Sbjct: 651 RDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPMGRATSGVLGMRFNAG--DEL 708

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  EG   + +  R Y +  +     +  RGG G L  +   R GK + +
Sbjct: 709 LSMSVVYEGAQVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGA 762



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    +  P  V+ +  G ++  +  + D +      A++ ++ D L  A
Sbjct: 600 QPDERIAEVIQIPHYQAAPYLVLATKGGLVKKSELAAFDSNRAGGIVAVNLRDDDELVGA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
           +       +LL+S +G++    A +  + R  G A   ++ +  N   ++++  V     
Sbjct: 660 VLCDANADLLLISAEGQSIRFHATD-ETLRPMGRATSGVLGMRFNAGDELLSMSVVYEGA 718

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV + +G A   +  E     R GK  L +       K+   + V  D  V  +    
Sbjct: 719 QVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGALIVDLDTEVYAITSGA 778

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            ++     ++ +  R   GVRL +  +G     I     +  T 
Sbjct: 779 GVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIARNADDADTV 822


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/781 (32%), Positives = 414/781 (53%), Gaps = 41/781 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  I+++     E++  VS+   L + YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MTEITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMR 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+       F KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++D
Sbjct: 61  ELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTEARMT++ + ++  +D++ VDF  TY+   +EP+VFP++ PNLL NG++G
Sbjct: 121 GDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+ +  + +I++P I++  L+E I GPDFPTGG  +  R  I E+
Sbjct: 181 IAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGG-FICGRAGIREA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R+R  +E+   G   IV+TEIPYQ  KS L+EKIA LI  KRI  + + R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    +    ++++  ++ ++ ++  F + M  +     P+V+ L  IL+
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNM-RPEVLNLRQILE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            ++ HR+ V++RR+++ ++  + +  +L+GL IA  N+DE++A+I+   N  + +  +++
Sbjct: 359 NFILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLIN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+  Q  AIL +RL  L  LE  +I  E D L+ E   +  +L         I  E 
Sbjct: 419 RFGLSAIQAQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEF 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             ++E +        RRT   +        L + MI +E + V +++ G+I+        
Sbjct: 479 EAIRETYGD-----DRRTEIIDAPD---EILPEDMIAREEMVVTVTHAGYIKRNPVDTYR 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             +     +      + D +     A T D +L  S  G+ +      +        G+A
Sbjct: 531 SQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLARGKA 590

Query: 590 IQLLIDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +  L++L   + +      DS          +L+ + KG       SE     ++GK  L
Sbjct: 591 VVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIAL 650

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI--- 697
            +  ++++      TGD  V ++      + F    I  M RG  GVR  +   G     
Sbjct: 651 TIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAMGRGASGVRGITLAAGDEQKG 710

Query: 698 ---SDVICFKICEG---LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               ++I  ++  G    + +  +   + +        L +RGG G +  K   R+G+ +
Sbjct: 711 IPADELIGLQVLSGDPEASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERNGEVV 770

Query: 752 S 752
            
Sbjct: 771 G 771



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++ + +G ++        +       AL  +E D +  A      + +LLLS  G A  
Sbjct: 622 ILMATKKGVVKKTALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVR 681

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI---------VTAFVYDSTCKLLVVSSKGNAFI 625
              G++ +       ++ +     ++           +     D    +LVVS  G    
Sbjct: 682 FHEGDIRAMGRGASGVRGITLAAGDEQKGIPADELIGLQVLSGDPEASILVVSENGFGKR 741

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEM 681
            +  E     R GK  + + + E+   VV        D V ++    +++   +  I  +
Sbjct: 742 SKVGEYRLIRRGGKGVMAIKASERNGEVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVI 801

Query: 682 SR-GKGVRLQSYKDG 695
            R  +GVRL +  + 
Sbjct: 802 GRSTQGVRLFNLDNE 816


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/791 (33%), Positives = 406/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NI  II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/790 (32%), Positives = 409/790 (51%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++ +   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  + + +KKSA
Sbjct: 8   LDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L  ++++ VDF   Y+E + EP V P+K P LL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  AA+A+IDNPEI I +L+E+I GPDFPT  II  +R  I E+Y  GRG   +RAR 
Sbjct: 188 TEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGAR-GIAEAYATGRGRVHIRARA 246

Query: 257 CVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E     G   IVV E+PYQV K+RL+EKIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 DIETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIV 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++ +++  + M+T F +NM  +  G+ P+ + L  +L  ++ HRREV+ RR
Sbjct: 307 LRRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQ-PRTLNLKDVLAAFIRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------ 420
           S F ++    R  IL+GL  A  NIDE+I +I+   N  + K  ++SR            
Sbjct: 366 SIFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLG 425

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL++RL  L  LE+ +I  E   +L   
Sbjct: 426 EAGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++ ++L+        I  E+  +   +        RRT   E+         + +I +E
Sbjct: 486 GELLAILSDPDNLMAVIRDELVAINAEYGDE-----RRT---EILANHLDLTLEDLITEE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+ ++         K      +A   K+ D ++    A+T D +L  S+ G
Sbjct: 538 EMVVTLSHAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTG 597

Query: 571 KAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y      L  G     G+ I  L+ L   + I        +++   + + ++ G    
Sbjct: 598 KVYWKKVYELPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEADKFIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
               +       G   + +  ++++  V    G   + +     K++ F    +  M R 
Sbjct: 658 TPLVDYSRPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSMGRV 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     D      +     EG   + +    Y +  N     +  RGG G +  + 
Sbjct: 718 SRGVRGMRIADNEKIISLIIAQEEGA-ILTATEFGYGKRTNLAEYRVQGRGGQGIISIQT 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 SDRNGSVVGA 786



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 125/381 (32%), Gaps = 50/381 (13%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +Q     ++++  LL    + D ++A+IR+E             TE   +  L+L L  L
Sbjct: 475 LQEYREVLDLIGELLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANH-LDLTLEDL 533

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGK----QQWNQIACE-IREV------------ 482
              EE  +        A+ +++D+     +    +    +  E   E             
Sbjct: 534 ITEEEMVVTLSHAG-YAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLC 592

Query: 483 ---------KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNR 527
                    K+++         R          E      A L     E +    + +  
Sbjct: 593 FSSTGKVYWKKVYELPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEADKFIFMATAS 652

Query: 528 GWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           G ++              + A+  K+ D L           I+L S+ GK    P  ++ 
Sbjct: 653 GTVKKTPLVDYSRPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVR 712

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S       ++ +  +  N+ I++  +      +L  +  G       +E     R G+  
Sbjct: 713 SMGRVSRGVRGM-RIADNEKIISLIIAQEEGAILTATEFGYGKRTNLAEYRVQGRGGQGI 771

Query: 642 LKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY---- 692
           + + + ++    +  V     D + ++     L+   +  +  + R  +GVRL +     
Sbjct: 772 ISIQTSDRNGSVVGAVQVCDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNE 831

Query: 693 KDGGISDVICFKICEGLTWID 713
           K  G+  V+  +    L  +D
Sbjct: 832 KLVGVERVLEDEEDAELPVVD 852


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/803 (33%), Positives = 403/803 (50%), Gaps = 77/803 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  ++KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ V+F   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA ID+  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAI-INGRRGIQEAYRTGRGKIYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   I+V EIPYQ+ K+RLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 KIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L     P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 VKRDAVAEVVLNNLYSLTQLQVSFGINMVAL-HQGQPKLLNLKDILSAFINHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A +NID  I +IR    P                      
Sbjct: 366 TIFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL   
Sbjct: 426 QAGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L + ++    I  E+  +K+ ++ +     RRT   E S        + +I +E
Sbjct: 486 GELLFILENPERLREVIREELLAIKDQYNDA-----RRTELTENSA---DINIEDLINQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D L+  L A+T D IL  S  G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y +    L        G  I  L+ L   + I        Y+    + + ++ G    
Sbjct: 598 KMYWMKVYQLPEASRGARGRPIVNLLPLEQEERITAILPVREYEDGLNIFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF----------- 673
            + SE       G   +K+S  +++  V    G + V +     K++ F           
Sbjct: 658 TKLSEFSRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDG 717

Query: 674 --SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
              +  +  M R   GVR      G     +     EG   +      Y +         
Sbjct: 718 TIRVKGVRAMGRTAAGVRGIKLSAGDKVVSLIIPRGEG-EILTVTENGYGKRTAQSEYPT 776

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             R   G +  K   R+G  + +
Sbjct: 777 KSRATQGVISIKVSERNGDVIGA 799



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 23/218 (10%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           E      A L     E      + +  G ++  K        S  + A+   +GD L   
Sbjct: 626 EQEERITAILPVREYEDGLNIFMATASGTVKKTKLSEFSRPRSAGIIAVKLSDGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTL----------PAGNLLSGRGHGEAIQLL--IDLNHNQDI 602
                ++ ++L S  GK                  +   R  G     +  I L+    +
Sbjct: 686 DLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKGVRAMGRTAAGVRGIKLSAGDKV 745

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTG 658
           V+  +     ++L V+  G      +SE    +R   G   +KVS    + +  +   T 
Sbjct: 746 VSLIIPRGEGEILTVTENGYGKRTAQSEYPTKSRATQGVISIKVSERNGDVIGAIQVETT 805

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           D + ++ +   L+   + ++  + R  +GV L    + 
Sbjct: 806 DQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTED 843


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/792 (31%), Positives = 398/792 (50%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + G  +   + K
Sbjct: 35  KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+GK HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG++DGD  AAYRYTEA
Sbjct: 95  SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VDF   Y+    EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A L L+D+P+     L+ Y+ GPDFPTG + +   + I E+Y  GRG   +RA
Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGAL-INGAKGIREAYETGRGRIYIRA 273

Query: 255 RWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E     G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RDES +D   ++
Sbjct: 274 KTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMV 333

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F L+ ++  F +NM  L  G  P+++ L   L+ ++AHRREV+ 
Sbjct: 334 IELRRGEVAEVILNNLFQLTQLQIVFGINMMALV-GGQPRLLSLKEALQVFIAHRREVVT 392

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR---------- 420
           RRS + ++    R  IL+GL IA  NIDEII +IR      + K  +++R          
Sbjct: 393 RRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDM 452

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL+LRL  L  LE+ +I  E   ++ 
Sbjct: 453 LARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIH 512

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E E +  +L   ++    I  E+ ++K  F+       RRT   +          + +I 
Sbjct: 513 EIEALLEILQVPERLLAVIKEELLDIKNQFND-----VRRTQILD---THLNLSLEDLIA 564

Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E   + +S+ G+I+        + +      SA   K+ D ++  + A+T D +L  + 
Sbjct: 565 EEDRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTN 624

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNA 623
            GK Y L    L        G+ +  L+     +    ++T   Y     L+  +  G  
Sbjct: 625 RGKVYWLKVYELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYPEDQYLIFATKSGTV 684

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                SE       G   + +  ++++  V +  G   + +  +  K + F+ + +  M 
Sbjct: 685 KKTPLSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSMG 744

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR  +  DG     +C    +G   +      Y +           RG  G +  
Sbjct: 745 RDSTGVRGMNLDDGQRVIALCVVEEQGD-ILTITENGYGKRTPVADYPQKGRGTKGVISI 803

Query: 742 KGFPRSGKFLSS 753
               R+G+ + +
Sbjct: 804 ACSARNGQAVCA 815



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 12/219 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      ++   +  +  G ++        +  S+ + A++ +E D L   
Sbjct: 655 EPGERLNAVLTTRDYPEDQYLIFATKSGTVKKTPLSEYSRPRSIGIIAINLREDDELVDV 714

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  I+L S  GKA      ++ S       ++ + +L+  Q ++   V +    +
Sbjct: 715 ARTDGSRDIMLFSDAGKAVRFNENSVRSMGRDSTGVRGM-NLDDGQRVIALCVVEEQGDI 773

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G       ++     R  K  + +     + + +  V  +  +H+ +V +N  L
Sbjct: 774 LTITENGYGKRTPVADYPQKGRGTKGVISIACSARNGQAVCAVQVLEDEHIMLVTDNGTL 833

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +   + +I    R  +GVRL    D      +   + E 
Sbjct: 834 VRTRVAEISTSGRNTQGVRLIRTTDSEKLIAVAKIVAES 872



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 20/193 (10%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA  +RE  E+   +   G R       +       + +             
Sbjct: 693 SRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENS------------- 739

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG 585
              +RS+   S  +  ++  +G  +           IL ++ +G     P  +    GRG
Sbjct: 740 ---VRSMGRDSTGVRGMNLDDGQRVIALCVVEEQGDILTITENGYGKRTPVADYPQKGRG 796

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK 643
               I +     + Q +    V +    +++V+  G       +EI  + R   G   ++
Sbjct: 797 TKGVISIACSARNGQAVCAVQVLEDE-HIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIR 855

Query: 644 VSSEEKMKLVVKV 656
            +  EK+  V K+
Sbjct: 856 TTDSEKLIAVAKI 868


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/810 (30%), Positives = 398/810 (49%), Gaps = 71/810 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   +    +SL   +   YL YA+S I  RA+PD RDG KPVHRR++ +M E+  D+
Sbjct: 29  PMTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDW 88

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSAR VG+V+GK HPHGD ++YD++VR+AQ F  R+ LI GQGNFG++DGD+AAA
Sbjct: 89  NRPYRKSARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAA 148

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+ ++A  +L  +D++ VDF   Y+  + EP+V PSK PNLL NG++GIAVGMA
Sbjct: 149 MRYTEIRLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMA 208

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A L L+ +P+ SI++L+E I  PDFPT GI +     + + YR GRG
Sbjct: 209 TNIPPHNLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGI-IYGINGVKDGYRTGRG 267

Query: 249 GFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RA+   E++ RG    I+V E+PYQV K  L E++AEL+  K++  +  I+DES +
Sbjct: 268 KVVMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDK 327

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R   P++++ +++  + ++  F +NM  L  G+ P++  L  ++  +L H
Sbjct: 328 SGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLVSVFLQH 386

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  +L+GL +A  NID+ IAIIRN   P              
Sbjct: 387 RREVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDS 446

Query: 417 ----------------------------------MVSRFSLTENQVDAILNLRLRSLRKL 442
                                                R+ L++ Q   IL +RL+ L  L
Sbjct: 447 QLVREMLTRTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGL 506

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ +I +E  + +   + +  +L   ++    I  E+  +++ F +       R +  E 
Sbjct: 507 EQDKIVAEYKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSA--RRSIIEH 564

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           S  D  T  + +I    + V +S+ G+I+S         K       A   KE D +   
Sbjct: 565 SAQDLCT--EDLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQL 622

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV----- 607
             A+T D IL  S  G+ Y L    + +G     G  I  +  L   + I          
Sbjct: 623 FIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAM 682

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVV 664
             + +   + + +S G        E     + G     +   + +       G H V + 
Sbjct: 683 RSFPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLF 742

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +  K + F  + +  +SR  +GVR    ++G     +     E  + + +    Y +  
Sbjct: 743 SDGGKAVRFDENDVRPLSRQARGVRGMLLEEGQSVIAMLVAEDETQSVLTATENGYGKRT 802

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      RG  G +  +   R+GK +++
Sbjct: 803 GIVEYTRHGRGTKGMIAIQQSGRNGKVVAA 832



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
              +    + ++ G ++              + A H  +GD L  A        ++L S 
Sbjct: 685 FPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSD 744

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ ++ L   Q ++   V  D T  +L  +  G      
Sbjct: 745 GGKAVRFDENDVRPLSRQARGVRGML-LEEGQSVIAMLVAEDETQSVLTATENGYGKRTG 803

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +    +   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 804 IVEYTRHGRGTKGMIAIQQSGRNGKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGR 863

Query: 684 GK-GVRLQSYKDGG 696
              GV L +  +G 
Sbjct: 864 ATQGVTLIALDEGA 877


>gi|118578454|ref|YP_899704.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/785 (32%), Positives = 405/785 (51%), Gaps = 57/785 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +M  D+   +
Sbjct: 4   TPQNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD + YD++VR+AQ F  RY L+ GQGNFG+IDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ Q++  +L  +D++ V     YN+E  EP V PSKFPNLL NG++GIAVGMAT+IP
Sbjct: 124 EIRLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A+I+NP+++ E+LL  I GPDFPTG   +  R+ I ++Y  GRG  ++
Sbjct: 184 PHNLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGA-TIYGRQGIRDAYTTGRGIIQI 242

Query: 253 RARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  +E   +     I+VTE+PYQV K+RLIEKIAEL+  K+I  + +IRDES  +   
Sbjct: 243 RAKAHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++L+  ++ L+ M+T F + +  +     P+++ L  ++  ++ HR EV
Sbjct: 303 IVVEVKRDDNPEVLLNLLYKLTQMQTSFGIILLAIV-HNRPRILSLREMIDCFIEHRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------- 422
           + RR++F ++    R  IL+GL IA   +D +I +IR+   P                  
Sbjct: 362 VTRRTNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFL 421

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           L+E Q  AIL +RL+ L  LE  +I SE + ++    ++  +L 
Sbjct: 422 ARLELPRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILA 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S ++ +N I  E+ E+++ F        RR+   E+S        +  I  E + V IS+
Sbjct: 482 SDREIFNIIISELTEIRDKFGD-----IRRS---EISDTTPDISLEDTIMDEEMVVTISH 533

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      + +  +E D ++    A T D +L  +  G+ Y L   
Sbjct: 534 TGYIKRSAVDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVY 593

Query: 579 NLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            +  G     G+A+  L+++   + I T      +     L + +  G        E   
Sbjct: 594 EIPEGNRTTKGKAVVNLVNVGMEEKITTILPVKEFSEHTFLFMATRNGVVKKTPLIEYSN 653

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + +   +K+  V    G   V +   N K + FS   +  M R  +GVR  +
Sbjct: 654 VRSGGIIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSMGRVTRGVRGMN 713

Query: 692 YKDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             +     VI  +I      G T        Y +  +        RGG G +  K   R+
Sbjct: 714 LNED--DHVIGMEIVHNDVVGSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN 771

Query: 748 GKFLS 752
           G  ++
Sbjct: 772 GSVVN 776



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 15/215 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
           +       L      +     + +  G ++              + A++  +GD L    
Sbjct: 615 MEEKITTILPVKEFSEHTFLFMATRNGVVKKTPLIEYSNVRSGGIIAVNLDDGDKLIGVA 674

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---C 612
               T  + L S +GKA      ++ S       ++ + +LN +  ++   +  +     
Sbjct: 675 LTDGTKDVFLASRNGKAIRFSEQDVRSMGRVTRGVRGM-NLNEDDHVIGMEIVHNDVVGS 733

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
            +  V   G     +  E    +R GK  + + +  +   +  V++V+ D  + V+ +N 
Sbjct: 734 TIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARNGSVVNVMQVSNDNDLMVITDNG 793

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           K+L   +     + R  +GVRL + ++      + 
Sbjct: 794 KILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVA 828


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/726 (49%), Positives = 512/726 (70%), Gaps = 5/726 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR+I AM ++ LD  + FKK 
Sbjct: 9   HVENTKLVDALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKKC 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+AAA RYTEAR
Sbjct: 69  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA+ +L+G+++D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN
Sbjct: 129 LTEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V EIC AA+ LI +P++++ KLLE + GPDFPTG +IVE R++I  +Y  GRG FR+RAR
Sbjct: 189 VGEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRAR 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+   G+W IVVTEIPYQVQKSRLIE++A+L+  K++PLL DIRDES+ D+R+VL P
Sbjct: 249 WEVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSADIRLVLEP 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+R ++P++LME++F  + +E+RF LNMNVL   +VP V  L  +L+ WL HR +VL RR
Sbjct: 309 KSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +  R+ A+DRR+EIL G L  YLN+DE+I IIR ED  +  +++ F L+E Q +++LN+R
Sbjct: 369 TRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDDARASLMAAFDLSELQAESVLNMR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E   L  E+  + +L+     +W  I  EI+ +++ F     LG R
Sbjct: 429 LRSLRRLEETEIRKEHAALTEERAGLLALMEKESLRWKHITSEIKGIQKKFG-GGTLGAR 487

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+T      A+        +E+EP++V++S +GWIR+++ H VD  A  FKEGD L++ +
Sbjct: 488 RSTLA-APPAEVDISAALPVEREPLSVILSQKGWIRTVRGHGVDPEAQKFKEGDGLRLIV 546

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              ++DR+   +TDG+A+TL A +L  GRG G+ ++L+I+L++ +DI+T F      + L
Sbjct: 547 ECQSSDRLCCFATDGRAFTLRAADLPRGRGDGQPLRLMIELSNEEDIITIFPVTQDARRL 606

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           + SS G   IV E +++A  R GK  L +   E  ++     GDHV V+G N+++L+F++
Sbjct: 607 LASSAGRGMIVREEDMVAEKRTGKQVLNLKEGESAQVCALAQGDHVLVIGSNKRMLVFAL 666

Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
            Q+PEM+RG GV LQ YK+G + D + F    G+ W D       R+ +D+   +GKRG 
Sbjct: 667 TQLPEMTRGLGVALQKYKEGHLRDAVVFAGDAGVAWPDP---QRVRTLSDMKEQMGKRGD 723

Query: 736 VGSLVP 741
           +G   P
Sbjct: 724 MGRPAP 729


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/757 (31%), Positives = 400/757 (52%), Gaps = 33/757 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   +++ ++ YA+S I +RA+PD+RDG KPV RRI++   + G+       K A
Sbjct: 4   VLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+GK HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG++DGD  AA RYTEAR+
Sbjct: 64  KIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +LQ +D++ V F   Y+    +P V P+  PNLL NG++GIAVGMATS+P HN+
Sbjct: 124 SNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + +IDNPE+++E++++ + GPDFPTG  +  SR  I E+Y  GRG  +VRAR 
Sbjct: 184 GEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAKL--SRRGIKEAYATGRGSLKVRARV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+   G   +V TEIPYQV K+ LI +IA L+  K I  +  +RDES      +    
Sbjct: 242 RNED-KNGRAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +P +++  ++  S ++T F +N+  +  G  P+V+ L  +++ +L HR  V+ +R+
Sbjct: 301 KRGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGE-PKVLTLLELMRHYLDHRGLVVRKRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433
            + ++    R  +L+GLLIA  +IDE+IA+I   ++  + +  ++ RFSLTE Q  AIL+
Sbjct: 360 EYELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLMGRFSLTEVQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++++E   L+ E  +++++L   K+ W  +  E+  +K+ +       
Sbjct: 420 MRLQRLVGLERDKLQAEYRELMEEIGRLEAILGDEKRLWRVVRDELLAIKDKYGD----- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
           +RRT   E          + +IE EP+ + ++++G+++              +   A   
Sbjct: 475 QRRTQITEFEE---GFSLEDLIEDEPMVITLTSQGFVKRTPLEAYRAQGRGGMGAQAGKT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   D +L+ +  G+ Y      L   S +  G  I  L+ L   +++ 
Sbjct: 532 KEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQARGTHIVSLLPLQEGEEVA 591

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD 659
                         +  +  G     E  E    +  G   + +   + +  V +   GD
Sbjct: 592 ALLNVRDLTQEGYFVFATKNGLIKKTEIKEYQNLSSAGLIAINLLENDALVGVAIAQEGD 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI---CEGLTWIDSA 715
            V +  ++ + + F +  +    R  +GV    +K+G    V+   I    E    +   
Sbjct: 652 QVMLATQSGQAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESEVLAVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        L  RGG+G +      + G+  +
Sbjct: 712 SHGYGKRTPISEYPLQGRGGMGVITFNTNEKVGQLAA 748



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 21/216 (9%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
              E          + + ++       +  G I+           S  L A++  E D+L
Sbjct: 583 PLQEGEEVAALLNVRDLTQEGYFVFA-TKNGLIKKTEIKEYQNLSSAGLIAINLLENDAL 641

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN----HNQDIVTAFV 607
                A   D+++L +  G+A       L   R  G A Q +  +      +  +V+  +
Sbjct: 642 VGVAIAQEGDQVMLATQSGQAIR---FELSDVRATGRASQGVTGIRFKEGRDDRVVSLVI 698

Query: 608 YD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHV 661
                  ++L V S G       SE     R G   +  ++ EK+     L+     + +
Sbjct: 699 LPKGEESEVLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNEKVGQLAALMRVQGNEDL 758

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            V+      +   +  I +  R   GVR+ +  D  
Sbjct: 759 LVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKD 794



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 10/139 (7%)

Query: 530 IRSLKSHSVDLSALHFKEG--DSLKIALHA----HTTDRILLLSTDGKAYTLPAGNLLSG 583
           +R+    S  ++ + FKEG  D +   +       +   +L + + G     P       
Sbjct: 670 VRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEES--EVLAVGSHGYGKRTPISEYPLQ 727

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
              G  +           +           LLV+S +GNA   + S I    R   G   
Sbjct: 728 GRGGMGVITFNTNEKVGQLAALMRVQGNEDLLVLSRRGNAIRTKVSSIAQYGRATSGVRV 787

Query: 642 LKVSSEEKMKLVVKVTGDH 660
           + +S ++++     +    
Sbjct: 788 MNLSDKDEIASAFVIAPQD 806


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTAEHYLFFATRQGIVKRANVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G    V    + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHL-VGATIVSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 16/211 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                E      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTAEHYLFFATRQGIVKRANVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G     +  I L     +V A +   
Sbjct: 649 NVFLTDGQADVIMGTKFG--YSVRFAE-TDVRNMGRTATGVRGIKLREGDHLVGATIVSD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +
Sbjct: 706 DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITD 765

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              ++  SI  I +  R   GV++    +  
Sbjct: 766 TGVIIRTSIANISQTGRSTMGVKVMRLDEEA 796



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 23/244 (9%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R+  L+  E  +       L            S +   N    +  E    F+    +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTIINVTKDQTAEHYLFFATRQGI-V 620

Query: 495 RRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           +R    E S              D   +   + + +   ++ +  G+        +R++ 
Sbjct: 621 KRANVNEFSNIRQNGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG 680

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  +  +  +EGD L  A        +L+LS +G     PA    +    G+ I  L 
Sbjct: 681 RTATGVRGIKLREGDHLVGATIVSDDQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLK 740

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             + N  +           ++V++  G       + I    R   G   +++  E K+  
Sbjct: 741 VADKNGPLAGLTTVQGDEDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMT 800

Query: 653 VVKV 656
              V
Sbjct: 801 FALV 804


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  D   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHDNPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/790 (31%), Positives = 401/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM Q+   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IAII+    P   K  ++++                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITVMIGEELAAVKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     DG     +     E  + + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 639 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 698

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L+  Q ++   V       +L  +  G       +E   
Sbjct: 699 FDENDVRPMGREARGVRGM-QLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTR 757

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV      T D + ++     L+   + +I EM R   GV 
Sbjct: 758 HGRGTKGMIAIQTSERNGRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 817

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 818 LISLDEG 824


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/757 (37%), Positives = 445/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I EG T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             AG R+ +   +DL  + G+RG  GS +P+GF R  
Sbjct: 708 LQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVD 744


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 393/763 (51%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L     P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNE-PKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR      + K  ++ RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++ +E   L     ++  +L    +    I  EI+ + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I  E + V I+N G+I+               
Sbjct: 485 GD-----DRRTKIG---YDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  +  G+ Y L A  +        G AI  LI L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +D    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
                 + + +V +    + F    +    R   GV    +      ++I  ++  +G  
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSD--DEIIGMQMASQGEC 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G    +   ++G  + +
Sbjct: 715 LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYLVGA 757



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 71/238 (29%), Gaps = 18/238 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      AT+     +++    + +  G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKE 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +E D L        T+ I L++  G        ++         + 
Sbjct: 634 YENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
            +   + + +I+   +      LLVVS  G        E  +  R GK      +   + 
Sbjct: 694 GM-KFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
             +   +   G  + ++     ++   ++ I  + R   GV+L          V    
Sbjct: 753 YLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIA 810


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/759 (33%), Positives = 401/759 (52%), Gaps = 32/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE    +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +K
Sbjct: 5   EEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 65  KSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++A  +L  ++++ VDF   Y+E  +EP V P+KFP LL NG+SGIAVGM T+IP 
Sbjct: 125 VRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL++ P+I+IE+L+ +I GPDFPT G  +  R+ I E+Y  GRG   VR
Sbjct: 185 HNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYG-KIYGRKGIHEAYTTGRGIITVR 243

Query: 254 ARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           A+  VE   +     IVVTE+PYQV K++L+EKIAEL+ AK I     +RDES      +
Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R   PD+++  ++  ++M T F +    +     P++  L  +L+++L HRR V+
Sbjct: 304 AIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNN-RPELFTLKELLEQFLNHRRSVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F  +    R  IL+GL+ A  N+D ++A+IR     ++ K  +V  F LT+ Q  
Sbjct: 363 IRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQSFELTQIQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  LE  +I  E   LL +      +L+S +   + I  E+ E+K+ +   
Sbjct: 423 AILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEILSSDQVVRDIIKQELTELKDEYQD- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E +        + +I +E + V ++  G+I+                 +
Sbjct: 482 ----DRRTQIVEATG---EINIEDLIAEEDMVVTVTRSGYIKRNPITLYASQHRGGKGKT 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A+  K+ D ++    A T    L ++  GK Y      L        G+AI  L++    
Sbjct: 535 AMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAGRTSLGKAIVNLLNFEQG 594

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T      +     +++ +  G     +          G   +K++ ++++      
Sbjct: 595 EKLATVLTVPEFVEDRYVVMATKLGRVKKTDLMAYSRPRSGGLIGIKLADDDELIAAGIT 654

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWID 713
            G   + +  E  K++ F  + +   +RG  GVR      G  S V+  ++   G T + 
Sbjct: 655 DGKTDIFLGSEGGKVIRFDENDVRTTARGSMGVRGMRIDPG--SCVVGMEVLNHGQTLLT 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +           RGG G    +   R+GK ++
Sbjct: 713 VTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVA 751



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   V+ +  G ++        +  S  L  +   + D L  A
Sbjct: 592 EQGEKLATVLTVPEFVEDRYVVMATKLGRVKKTDLMAYSRPRSGGLIGIKLADDDELIAA 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I L S  GK       ++ +       ++ +  ++    +V   V +    L
Sbjct: 652 GITDGKTDIFLGSEGGKVIRFDENDVRTTARGSMGVRGM-RIDPGSCVVGMEVLNHGQTL 710

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E  + TR GK    + + E+    + L++    D + +V +  KL
Sbjct: 711 LTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVALLLVEDEDELMLVTDGGKL 770

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   I  I  +SR  +GV+L +   G
Sbjct: 771 IRTGIQDISVISRNTQGVKLINLSPG 796


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/759 (29%), Positives = 383/759 (50%), Gaps = 36/759 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +       +KK AR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARV 61

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RYTE R+++
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + E ++  +D+D VD  + +++   EP V P++ PNLL NG +GIAVGMAT++P+HN++E
Sbjct: 122 MGEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLRE 181

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + E   A IDNPEI +++L+++I  PDFPTG   +   + + ++Y  GRG   +RA+  +
Sbjct: 182 VIEGCCAYIDNPEIELDELMKHIQAPDFPTGA-YIYGLQGVKDAYETGRGRIIIRAKAEI 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        IVVTEIPY V K +LIE IA L+   ++  + ++ DES      ++    R
Sbjct: 241 E-SDESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKR 299

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++ HR +V  RR+ F
Sbjct: 300 DANANVILNKLFKMTALQSSFSVNNIALVKG-RPRLLSLKECVKYFVEHRHDVTIRRTKF 358

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435
            ++    R  IL+GL+IA  NIDE++ IIR    P     +   RF L   Q  AI+++R
Sbjct: 359 ELKKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKRFDLDNLQSKAIVDMR 418

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  L   Q+ +E D L      ++++L+  +     +  E+ EVKE +        R
Sbjct: 419 LSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCKKVMKDELNEVKEKYGD-----DR 473

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT        +     +     +P+ + +S+ G+I+              V       ++
Sbjct: 474 RTKII---PDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGATHRD 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
            D  +    A     +L  +  G+ Y L   N+  G     G AIQ L++++ +  I   
Sbjct: 531 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAIQNLLNIDSDDAINAI 590

Query: 606 F--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                     + ++  ++  +  G                G   + ++  +++  V    
Sbjct: 591 LRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIAEGDEVVDVRLTN 650

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLTWID 713
           G+  + +   N + + F  + +  M R   GVR     DG   +  +I        T + 
Sbjct: 651 GENELIMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDGDDAVVGMIVVNDPVNETVMV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +   Y +           RGG G        ++G+ ++
Sbjct: 711 VSENGYGKRSLVEDYRKTNRGGKGVKTLSITDKTGRLVA 749



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G ++        +  +  + A++  EGD +      +  + +
Sbjct: 596 LNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIAEGDEVVDVRLTNGENEL 655

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKG 621
           ++ + +G+A       + +       ++ +   + +  +V   V +      ++VVS  G
Sbjct: 656 IMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDGDDAVVGMIVVNDPVNETVMVVSENG 715

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  +   ++  +  VT D  + ++ ++   +  ++ +
Sbjct: 716 YGKRSLVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGITIRLAVSE 775

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDV 700
              M R   GVRL +   K+  I+ V
Sbjct: 776 CRVMGRATQGVRLINLSKKNDVIASV 801


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/767 (31%), Positives = 399/767 (52%), Gaps = 41/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +D+ E + E+LLE     I GPDFPT G+IV  R  I ++YR GRG  
Sbjct: 191 NLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIV-GRSGIEDAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   ++  + D+RDE SA   
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F +NM  +  G VP+ + LD +++ ++ H+ 
Sbjct: 309 QRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMIRYYVEHQV 367

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           +V+ RR+ ++++    R+ +L GLLIA  ++DE+I++IRN    D  +  ++ RF+L+E 
Sbjct: 368 DVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMERFTLSEI 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  E   L A   +++++L S  +Q   I  E+ EV E F
Sbjct: 428 QATAILDMQLRRLAALERQRIIDEAAELRARISELEAILASPVRQRQIIGEELAEVVEKF 487

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        +     + +I +E + V ++  G+         RS +    
Sbjct: 488 GDE-----RRTRLV---PFEGDMSIEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGGK 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     +E D ++      T   +L  +  G+ Y   A  L        G+ +  ++  
Sbjct: 540 GVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAF 599

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ I        Y+    L++ + +G       S+  +N   G   + +  ++++   
Sbjct: 600 SQDERIAEVIALKDYEVAPYLVLATKRGLCKKTALSDFDSNRAGGLVAINLRDDDELIAA 659

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI---SDVICFKIC 706
             V  GD + +V  N + + F  D   +  M R   GV    +         DV+     
Sbjct: 660 RLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVPGTT 719

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             L    S G  Y +        +  RGG G L  K     G  + +
Sbjct: 720 ADLLVATSGG--YAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 72/208 (34%), Gaps = 14/208 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                  +     E  P  V+ + RG  +       D +      A++ ++ D L  A  
Sbjct: 602 DERIAEVIALKDYEVAPYLVLATKRGLCKKTALSDFDSNRAGGLVAINLRDDDELIAARL 661

Query: 557 AHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               D +LL+S + ++    A +      GR     I +  D       +   V  +T  
Sbjct: 662 VAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVPGTTAD 721

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRK 669
           LLV +S G A     +E     R GK  L    VS+   +   + V   D +  +  N  
Sbjct: 722 LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVDPDDQLYAIASNGG 781

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           +L      +    R   GVRL   + G 
Sbjct: 782 VLRTIAKDVRRAQRQTMGVRLIDLETGV 809


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/763 (31%), Positives = 393/763 (51%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + SIE+L+E + GPDFPTG  I+  +  I E+YR G+G 
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGKGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTEIPY V K+RLIEKIAEL+  KR+  + D+RDES  + 
Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F +NM  L     P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNE-PKVLNLHQMLTYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A   IDE+I IIR      + K  ++ RF L++ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++ +E   L     ++  +L    +    I  EI+ + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I  E + V I+N G+I+               
Sbjct: 485 GD-----DRRTKIG---YDEFDMSAEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  +  G+ Y L A  +        G AI  LI L
Sbjct: 537 GIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +D    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 QPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKEYENVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
                 + + +V +    + F    +    R   GV    +      ++I  ++  +G  
Sbjct: 657 KATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVIGMKFDSD--DEIIGMQMASQGEC 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G    +   ++G  + +
Sbjct: 715 LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYLVGA 757



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 71/238 (29%), Gaps = 18/238 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      AT+     +++    + +  G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFDEDKFLFMATKNGMVKRTPMKE 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +E D L        T+ I L++  G        ++         + 
Sbjct: 634 YENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRITGRVSMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
            +   + + +I+   +      LLVVS  G        E  +  R GK      +   + 
Sbjct: 694 GM-KFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTG 752

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
             +   +   G  + ++     ++   ++ I  + R   GV+L          V    
Sbjct: 753 YLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIA 810


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/815 (32%), Positives = 408/815 (50%), Gaps = 89/815 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKSA
Sbjct: 8   ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V+  +L  ++++ VD+ D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 128 ARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LALI+NP+I+I++L++YI GPDFPT  I +  ++ I ++Y+ GRG   +RA+ 
Sbjct: 188 NEVINGCLALINNPDITIDELIDYIPGPDFPTAAI-ISGKKGIEQAYKTGRGKVYIRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE   RG   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++   
Sbjct: 247 EVETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVEI 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + M+T F +NM  L  G+ P+++ L  +L  ++ HRREV+ RR+
Sbjct: 307 KRGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQ-PKLLNLKEMLHAFVVHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------------- 416
            F ++    R   L+GL IA  NID II +IR    P                       
Sbjct: 366 VFDLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLER 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ L+  Q  AIL LRL  L  LE  +I +E   LL   
Sbjct: 426 TGESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L+S ++    I  E+   KE +      G  R T    +  D     + +I +E
Sbjct: 486 AELLHILSSPERLLEVIRDELALAKEQY------GDERRTVITAAAHD--ISLEDLINEE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L   S    G+ I  L+ L  N+ I        Y+    + + ++ G    
Sbjct: 598 RLYWLKVYQLPLASRAARGKPIINLLPLEANERITAILPVREYEENKYIFMATAFGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ------- 677
              +        G   + ++  + +  V    G + + +  +  K++ F   +       
Sbjct: 658 TPLTAYSRQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDE 717

Query: 678 ------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                             +  M R   GVR     +G     +     +G + +      
Sbjct: 718 NGNLVLDENGQPEIKFKGVRPMGRTATGVRGIKMGEGQRVVSLIVPKNDG-SILTVTENG 776

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  N        R   G +  K   R+GK + +
Sbjct: 777 YGKRTNLEDYPSKSRATQGVVSIKVSERNGKVVGA 811



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 35/233 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGDSL   
Sbjct: 626 EANERITAILPVREYEENKYIFMATAFGTVKKTPLTAYSRQRSSGIIAVNLNEGDSLIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                T+ I+L S  GK                          P       R  G     
Sbjct: 686 DITDGTNEIMLFSDAGKVVRFKESEESEVLDENGNLVLDENGQPEIKFKGVRPMGRTATG 745

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +  I +   Q +V+  V  +   +L V+  G        +  + +R   G   +KVS   
Sbjct: 746 VRGIKMGEGQRVVSLIVPKNDGSILTVTENGYGKRTNLEDYPSKSRATQGVVSIKVSERN 805

Query: 649 K--MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
              +  V  +  D + ++     L+   + ++  + R  +GV L    D  + 
Sbjct: 806 GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGRNTQGVILIRTIDEELV 858


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/790 (31%), Positives = 400/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------------- 420
            R  +L+GL +A  NIDE IAII+    P   K  ++++                     
Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAA 418

Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITVMIGEELTAVKAEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSADKYVFMTTALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     D      +     E  + + +    Y +           RG  G +  + 
Sbjct: 711 ARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 11/186 (5%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   +GD L  A        ++L S  GKA  
Sbjct: 639 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVR 698

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +   +  Q I           +L  +  G       +E   +
Sbjct: 699 FDENDVRPMGREARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRH 758

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV L
Sbjct: 759 GRGTKGMIAIQTSERNGRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 818

Query: 690 QSYKDG 695
            S  +G
Sbjct: 819 ISLDEG 824


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/806 (32%), Positives = 410/806 (50%), Gaps = 77/806 (9%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E   D+  A+KK
Sbjct: 6   KEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG VIGK HPHGD +VYD++VRLAQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A   L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ + +LALIDN  I+I++L+EYI GPDFPT    +  R  IV++Y+ GRG   +RA
Sbjct: 186 NLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSA-FINGRAGIVDAYKTGRGKIYMRA 244

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E + +G    IV TEIPYQ+ K+R+IEKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RHHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + D+++ ++F+ + ++  F +NM  L  G  P+++ L  +L+ ++ HRREV+ 
Sbjct: 305 IELRRGENADVVVNNLFIQTQLQGVFGINMVALVDG-RPELLNLKQVLECFVKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSR---------- 420
           RR+ F ++    R  +L+GL +A  NI+EII +IR      + K  +VS+          
Sbjct: 364 RRTIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSAM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL+LRL  L  LE  ++++E   L+ 
Sbjct: 424 LERAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALIE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L S  +    I  E+ E+K  F        RRT   E+  + +      +I+
Sbjct: 484 LIAELLHILASPARLMEVIREELEEIKAQFGD-----VRRT---EILTSRQDLTVADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           + P+ V ISN G+ +S         +      S+   K+ D +   L   + D I+L S 
Sbjct: 536 EAPMVVTISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY-----------------D 609
            GK Y L    +   S    G  I  L+ L+  + I                       D
Sbjct: 596 FGKVYWLRVFEIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKSDAEDAETEVSED 655

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENR 668
           +   + + ++ G                G   L +   +++  V    G D + +V    
Sbjct: 656 AESFIFMATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSSTG 715

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           K + F    +  M R   GVR       G   V      EG++ + +    Y +      
Sbjct: 716 KTIRFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAIDD 775

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  RGG G +  +   R+G  + +
Sbjct: 776 FPVYGRGGQGVIGIQVSDRNGPVVGA 801



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 12/208 (5%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +    +   + E    + +  G ++        +  S  L AL   E D L      + 
Sbjct: 645 AEDAETEVSEDAESFIFMATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNG 704

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            D I+L+S+ GK       ++ +       ++ +        +V+  V +    +L    
Sbjct: 705 NDDIMLVSSTGKTIRFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACE 764

Query: 620 KGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            G        +     R G+  + +     +   +  V     D + ++ +   L+   +
Sbjct: 765 HGYGKRTAIDDFPVYGRGGQGVIGIQVSDRNGPVVGAVQVADDDEIILITDQGTLVRTRV 824

Query: 676 DQIPEMSR-GKGVRLQSY-KDGGISDVI 701
            ++    R  +GV L     +  +  V+
Sbjct: 825 SEVSCQGRNTQGVTLIRLTNEEQLVGVV 852


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/773 (31%), Positives = 398/773 (51%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ NT + E ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G
Sbjct: 1   MTDVNTPLVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD S+Y ++VRLAQP+  RY LI GQGNFG+   D 
Sbjct: 61  YRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDM 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++  +A  +++ +D+D VDF+  Y+    EP+V PS+FPNLL NG++GIAV
Sbjct: 121 PAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +     + NPE S E+LLE     + GPDFPTG +IV  R  I +
Sbjct: 181 GMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIV-GRRGIDD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA   VEE  +G  C+VVTE+PYQV    L   IAE +   RI  + D+
Sbjct: 240 AYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADV 299

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE S+   + ++    R     +++ +++  + ++T F  NM  L  G VP+ + LD  
Sbjct: 300 RDESSSRVGQRLVIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDG-VPRTLRLDQF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           ++ ++AH+ EV+ RR+ + ++  + R  IL+ LL A   +DE+IA+IR            
Sbjct: 359 VRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGGL 418

Query: 421 FSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +L    E Q  AIL+++LR L  LE  QI  E D L+A      ++L S ++Q   +  
Sbjct: 419 MALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAILASPERQRTIVFD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+   +              E+   +     + ++ +E + V I+  G+        
Sbjct: 479 ELSEIVSKYGDERK--------TEIIAYEGDMSIEDLLAEEDMVVTITRGGYAKRTNTDL 530

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHG 587
            R+ K     +     ++ D +       T   +L  +  G+ Y + A  L  SGR   G
Sbjct: 531 YRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSGRDARG 590

Query: 588 EAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+ +  ++   +++    Y+    L++ +  G       SE  +    G   + +
Sbjct: 591 QHLANLLAMQPDEVVMEVLDLRDYEVAPYLVLATRSGLVKKTRLSEYDSPRSGGLIAINL 650

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDV 700
             ++++     V+  D + +V    + + F+     +  M R   GV    +  GG   +
Sbjct: 651 REDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEALRPMGRATSGVIGMRF-LGGDELL 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +I +G   + +    Y +        +  RGG G L  K     GK + +
Sbjct: 710 AMNRIGDGDDVLIATEGGYAKRTPADQYPVQGRGGKGVLTAKIVSARGKLVGA 762


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/824 (33%), Positives = 399/824 (48%), Gaps = 97/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPEI ++ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLMNLKQMLEAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P                     
Sbjct: 364 RTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L    +    I  E+  VK  F      G  R T    S  D   L   +I  
Sbjct: 484 IAGLIHILEDPDRLLQVIREELVSVKAEF------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++                 SA   KE D ++     +T D +L  ++ 
Sbjct: 536 EDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYADGQFVFFATKNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                E      +GK  + +   + +  V    G   + +   N K + F  D++  M R
Sbjct: 656 KTPLGEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL--------------------------------- 709
              GVR      G   +V+   + E                                   
Sbjct: 716 TATGVRGIKMPAG--EEVVSLIVAESAGGIEDENEDDSGVEEAAANGDAVIEGADDASVQ 773

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           RG  G +  +   R+GK +++
Sbjct: 774 YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 45/247 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEPGERVQAVLPVRDYADGQFVFFATKNGTVKKTPLGEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ILL +++GK        + S       ++  I +   +++V+  V +S 
Sbjct: 682 VGVGLTDGQRDILLFASNGKTVRFGEDKVRSMGRTATGVRG-IKMPAGEEVVSLIVAESA 740

Query: 612 --------------------------------CKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                             +L  +  G        +     R  +
Sbjct: 741 GGIEDENEDDSGVEEAAANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQ 800

Query: 640 TFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-K 693
             + + + E+    +  V+  + D V ++ +   L+     +I  + R  +GV L    K
Sbjct: 801 GVIGIQTTERNGKLVAAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSK 860

Query: 694 DGGISDV 700
           D  +  V
Sbjct: 861 DEKLQAV 867


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 411/758 (54%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 7   EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++++EL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLIL-GTEEIRKAYTTGRGVIKMR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 246 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L  +++H+  V+ 
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F LTE Q  A
Sbjct: 365 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++ +    
Sbjct: 425 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E++        + +I +E + V ++   +I+          +   V +  
Sbjct: 484 ----RRT---EITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L A  +  SGR   G AI  L+ +  ++
Sbjct: 537 MGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L + + KG       +E     + G   + +  ++++  V    
Sbjct: 597 RITAVIQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTD 656

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G++ + +     K + F  D +  M R  +GVR  +  DG   +V+   I   G   +  
Sbjct: 657 GENRIMLGTRLGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMDILKSGSEVLTV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 715 TEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGPVVG 752



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 13/219 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +Q    + +    + + +G ++              L A++  E D L  
Sbjct: 592 VEADERITAVIQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIG 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  +RI+L +  GKA T P   + S       ++  I L+   ++V   +  S  +
Sbjct: 652 VKFTDGENRIMLGTRLGKAITFPEDGVRSMGRIARGVRG-ITLSDGDEVVAMDILKSGSE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L V+  G        E    TR GK  + +   EK   VV +        + ++     
Sbjct: 711 VLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGPVVGIRVVRGSQELMLITTEGI 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC 706
           ++  ++D+I  +SR  +GV+L +  ++  ++ +    + 
Sbjct: 771 VIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMT 809


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 410/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V ++  ++  Y+ Y++S I  RA+PD RDG KPVHRRI+H+M+E G+    A+KKS
Sbjct: 23  RVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKS 82

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDSAAA RYTE R
Sbjct: 83  ARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVR 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ + +  VDF+  Y+    EP V PSK PNLL NG++GIAVGMAT++  HN
Sbjct: 143 MDKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+PE  + +L + + GPDFPTGGII+     I  +Y  GR    +RA 
Sbjct: 203 LGEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIM-GTSGIKSAYETGRSPIYLRAV 261

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+    + IVV E+PYQV K+RL+E IA L+  K+I  + D+RDES  +   V+  
Sbjct: 262 TEIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIE 321

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             ++ +P +L+  ++  + +ET F +    L  G VP+V+ L  +++ +L HR +V+ RR
Sbjct: 322 LKKAANPKVLLNQLYKQTQLETTFGIINLALVDG-VPRVLNLRELIQIYLKHRIDVISRR 380

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL +A  NIDE+I +IR     ++ +  ++S F L E Q  AIL
Sbjct: 381 TVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLISNFDLDEIQAKAIL 440

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I  E + L+     +  +L + ++++  I  E+ E+K+ +      
Sbjct: 441 DMKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDERKYAIIRDEVLELKDKY------ 494

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
           G  R T  + SR + A   + +I +E + V  +  G+I+                +  + 
Sbjct: 495 GDERRTLIQSSREELAD--EDLIPEEEVVVTSTQSGYIKNIPLQTYNMQHRGGRGVRGME 552

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D++     A T D IL  +  GK Y     ++   S +  G+AI  L++L   + +
Sbjct: 553 TKEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRGSRQSRGKAIVNLLELAEGESV 612

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +++   L + +  G       S+     + G   + +   +++  V++  G+
Sbjct: 613 NAMIPVHDFENDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIAISLKEGDELVNVLQTDGN 672

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAG 716
             + +   + K L  S + +  M R  +GVR       G   ++   + +   T +    
Sbjct: 673 QDIMLASRHGKALRISEEDVRVMGRTARGVRGMKL--AGPDVIVSLDVVDSDGTLLTVTE 730

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +          +RGG G +      R+G  ++
Sbjct: 731 NGFGKRTPFDEYRTLRRGGQGVITIFTDMRNGPVVT 766



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 12/201 (5%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTT 560
            A +     E +    + +  G ++              + A+  KEGD L   L     
Sbjct: 613 NAMIPVHDFENDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIAISLKEGDELVNVLQTDGN 672

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             I+L S  GKA  +   ++         ++ +  L     IV+  V DS   LL V+  
Sbjct: 673 QDIMLASRHGKALRISEEDVRVMGRTARGVRGM-KLAGPDVIVSLDVVDSDGTLLTVTEN 731

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G        E     R G+  + + ++ +   VV V      D + +      ++   + 
Sbjct: 732 GFGKRTPFDEYRTLRRGGQGVITIFTDMRNGPVVTVKTVEDDDEIILTSSAGIVMRIPVT 791

Query: 677 QIPEMSR-GKGVRLQSYKDGG 696
            I    R  KGV++ + ++  
Sbjct: 792 DIRVQGRNTKGVKIMNIREKD 812



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  ++   IA  ++E  E+ +     G +               ++              
Sbjct: 645 SNPRKAGIIAISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEED------------- 691

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +R +   +  +  +     D +       +   +L ++ +G     P     + R  
Sbjct: 692 ---VRVMGRTARGVRGMKLAGPDVIVSLDVVDSDGTLLTVTENGFGKRTPFDEYRTLRRG 748

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKV 644
           G+ +  +     N  +VT    +   ++++ SS G    +  ++I       KG   + +
Sbjct: 749 GQGVITIFTDMRNGPVVTVKTVEDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMNI 808

Query: 645 SSEEKMKLVVKVTGDH 660
             ++K+  + ++  + 
Sbjct: 809 REKDKLVSLARIKKEE 824


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 404/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A ++ IDN EI IE+L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEIE-TGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +     RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  ++  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G ++        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VVFCTKNGIVKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPDTETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/790 (30%), Positives = 397/790 (50%), Gaps = 72/790 (9%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+  + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264
           L++NP+ S+++L+E I  PDFPT GI +     + + YR GRG   +RA    EE+ RG 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGI-IYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+V E+PYQV K  L+E+IAEL+  K++  + DIRDES +    V+    R   P++
Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++  F +NM  L   + P+++ L  IL+ +L+HRREVL RR+ + ++   
Sbjct: 300 VLNNLYKATQLQDTFGMNMVALVDNQ-PKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------------- 413
            R  +L+GL +A  NID+ IAII+    P                               
Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAA 418

Query: 414 --KPVMVSR-------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
             +                   + L++ Q   IL +RL+ L  LE+ +I  E  +++A+ 
Sbjct: 419 GGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L   ++    I  E+  VK  F  +      R +  E++  +     + +I  +
Sbjct: 479 ADLLDILARPERITVMIGEELNAVKVEFGDA------RRSKIELNATE--LNTEDLITPQ 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++S         K       A   KE D ++    A+T D IL  S  G
Sbjct: 531 DMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRG 590

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +   S    G  I  +  L   + I        + +   + + ++ G    
Sbjct: 591 RVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMTTALGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
                     +KG   + +   + +       G H V +  +  K + F  + +  M R 
Sbjct: 651 TPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMGRE 710

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR     +G     +     E  + + +    + +           RG  G +  + 
Sbjct: 711 ARGVRGMQLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQT 770

Query: 744 FPRSGKFLSS 753
             R+G+ +++
Sbjct: 771 SERNGRVVAA 780



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 13/187 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++     +        + A+   EGD L  A        ++L S  GKA  
Sbjct: 639 VFMTTALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVR 698

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIA 633
               ++         ++ +  L+  Q ++   V       +L  +  G       +E   
Sbjct: 699 FDENDVRPMGREARGVRGM-QLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTR 757

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           + R  K  + + + E+   VV  T     D + ++     L+   + +I EM R   GV 
Sbjct: 758 HGRGTKGMIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVT 817

Query: 689 LQSYKDG 695
           L S  +G
Sbjct: 818 LISLDEG 824


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/790 (32%), Positives = 403/790 (51%), Gaps = 65/790 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGD+AAA RYTE RM++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEIRMSR 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y++ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA LAL+ N  ISI++L++ I  PDFPT GI +     + + YR GRG   +RAR   
Sbjct: 190 VVEACLALLKNSNISIDELIDLIPAPDFPTAGI-IYGVNGVRDGYRTGRGRVVMRARTHF 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    I++ E+PYQV K+ L+ +I EL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + M+  F +NM  L  G+ P+++ L  IL  +L HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQILDAFLRHRREVVTRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F ++    R  +L+GL +A  N+DEIIA+I+    P     +  +               
Sbjct: 368 FELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLTRA 427

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L++ Q  AIL LRL+ L  LE+ +I +E  +++ + 
Sbjct: 428 MADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVIEKI 487

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                +L + ++    I  E+  +K  F        RR+   E+    +    + +I   
Sbjct: 488 IDYLDILANPERITQIITEELDAIKLQFGDE-----RRS---EIVVDTQDLSMEDLITPA 539

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+I+S         K       A   KE D +     A+T D IL  S+ G
Sbjct: 540 DVVVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLG 599

Query: 571 KAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    +  G  +  G+ I   + L   + I        +D    + + +S G    
Sbjct: 600 RVYWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFDENRFVFMATSFGTVKK 659

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683
              SE       G   + +   + +  V    G H V +  +N K + FS + +  M R 
Sbjct: 660 TPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGRT 719

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +GVR      G     +     E L  + +    Y +           RG  G +    
Sbjct: 720 ARGVRGMKLGPGHKVISMLVAENEDLAVLTATENGYGKRTPISEYTRHNRGTQGMIAIIT 779

Query: 744 FPRSGKFLSS 753
             R+GK +++
Sbjct: 780 SARNGKVVTA 789



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 17/227 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L     ++     + ++ G ++              + A+   EGD L
Sbjct: 625 VQLEEGEKINAILPVKTFDENRFVFMATSFGTVKKTPLSEFSRPRNNGIIAIGLDEGDFL 684

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-S 610
                      ++L S +GKA      ++         ++ +  L     +++  V +  
Sbjct: 685 IGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGRTARGVRGM-KLGPGHKVISMLVAENE 743

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGE 666
              +L  +  G       SE   + R  +  + + +  +   VV        D + ++  
Sbjct: 744 DLAVLTATENGYGKRTPISEYTRHNRGTQGMIAIITSARNGKVVTAKLVKPDDEIMLITS 803

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDG----GISDVICFKICEG 708
              L+   ++++ EMSR   GV L +   G    G+  V+  +  +G
Sbjct: 804 GGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVVESEDDDG 850


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/757 (37%), Positives = 445/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I EG T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             AG R+ +   +DL  + G+RG  GS +P+GF R  
Sbjct: 708 LQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVD 744


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L+DNP+++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + M+T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ RF L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T         +   L   + +G       +E     + G   L +  ++++  V 
Sbjct: 592 NESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G   V +  +    + F+   +  M R   GVR    ++G    V    + +    +
Sbjct: 652 LTDGQADVIMGTKFGYSVRFAETDVRNMGRTATGVRGIKLREGDHL-VGATIVSDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +           RGG G +  K   ++G    
Sbjct: 711 VLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 18/224 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E                +      + +G ++    +         L AL+ K+ D L 
Sbjct: 589 LEENESIQTIINVTKDQTADHYLFFATRQGIVKRTNVNEFSNIRQNGLKALNLKDDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G     +  I L     +V A +   
Sbjct: 649 NVFLTDGQADVIMGTKFG--YSVRFAE-TDVRNMGRTATGVRGIKLREGDHLVGATIVSD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV+S  G       SE     R GK  + +   +K   +  +  V GD  + V+ +
Sbjct: 706 DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKNGPLAGLTTVQGDEDIMVITD 765

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              ++  SI  I +  R   GV++    +   + ++ F + +  
Sbjct: 766 TGVIIRTSIANISQTGRSTMGVKVMRLDEE--AKIMTFALVDAA 807



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R+  L+  E  +       L            S +   N    +  +    F+    +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTIINVTKDQTADHYLFFATRQGI-V 620

Query: 495 RRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           +RT   E S              D   +   + + +   ++ +  G+        +R++ 
Sbjct: 621 KRTNVNEFSNIRQNGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG 680

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  +  +  +EGD L  A        +L+LS +G     PA    +    G+ I  L 
Sbjct: 681 RTATGVRGIKLREGDHLVGATIVSDDQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLK 740

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
             + N  +           ++V++  G       + I    R   G   +++  E K+  
Sbjct: 741 VADKNGPLAGLTTVQGDEDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMT 800

Query: 653 VVKVT 657
              V 
Sbjct: 801 FALVD 805


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/772 (29%), Positives = 389/772 (50%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  + T+ ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +G
Sbjct: 1   MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDS
Sbjct: 61  NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++ E I+  +++D VD  + ++    EP V P+K PNLL NG +GIAV
Sbjct: 121 AAAMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P+HN+ E+ +   A IDNPEI  E L+ +I  PDFPTG   +   + + ++Y  
Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGA-YIYGLQGVKDAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E        IV++EIPY V K++LIE IA+L+   R+  + +  DES
Sbjct: 240 GRGRIVLRAKAEIE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R  + ++++  +F ++ +++ F +N   L  G  P+++ L   +K ++
Sbjct: 299 GRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKG-RPRLLTLKECVKYFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            HR +V  RR+ F ++    R  IL+GL+IA  NIDE++ IIRN   P     +   RF 
Sbjct: 358 EHRHDVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKRFE 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q  AI+++RL  L  L   Q+ +E   L     ++  +L+  ++    +  E+ EV
Sbjct: 418 LDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPEECKRVMKAELEEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F        RRT   E+   +     +     +P+ + +S+ G+I+           
Sbjct: 478 KEKFGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQA 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V     + ++ D  +    A     +L  +  G+ + L    +  G     G AIQ 
Sbjct: 530 RGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTSKGRAIQN 589

Query: 593 LIDLNHNQDI--------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           L++++ +  +        +    +     ++  +  G                G   + +
Sbjct: 590 LLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEAYSRPRTNGVNAITI 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDV 700
           +  +++  V    G + + +   N + + F  + +  M R   GVR       D  +  +
Sbjct: 650 AEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGM 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I     E  T +  +   Y +           RGG G        ++GK ++
Sbjct: 710 IVVNNPETETVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNITDKTGKLVA 761



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 80/206 (38%), Gaps = 15/206 (7%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           K    V  +  G ++        +  +  ++A+   EGD +      +  +++++ + +G
Sbjct: 615 KNHFIVFATKNGTVKKTSLEAYSRPRTNGVNAITIAEGDEVVDVRLTNGKNQLIMANRNG 674

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEE 628
           +A       + +       ++ +     +  +V   V +   T  ++VVS  G       
Sbjct: 675 RAVYFDENTVRTMGRTATGVRGMRLDGGDDAVVGMIVVNNPETETVMVVSETGYGKRSIV 734

Query: 629 SEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG 684
           S+     R GK    ++  +   K+  +  VT D  + ++ ++   +  ++     M R 
Sbjct: 735 SDYRQTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRLAVANFRVMGRA 794

Query: 685 K-GVRLQSY--KDGGISDVICFKICE 707
             GVRL +   K+  I+ V   K  +
Sbjct: 795 TQGVRLINLSKKNDVIASVCKVKTSD 820


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/774 (29%), Positives = 399/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+       E  ++++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGN-RTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  S ++  F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S   + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L S ++Q   +  
Sbjct: 418 MSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILASPERQRTIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ E +        RR+       A     ++ +I +E + + I++ G+        
Sbjct: 478 ELTEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVITITSTGYAKRTKVDA 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ ++ G        +  +    G   + +
Sbjct: 590 QHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           + ++++         D + +V E  + + F+ D   +  M R   GV+   ++D     +
Sbjct: 650 NEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDN--DQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 708 LSMSVVRDGEFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 761



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  +    + +      A++  E D L  A
Sbjct: 599 QPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINLNEDDRLIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S  G++    A +    R  G A   +  +    N  +++  V     
Sbjct: 659 ALCGEEDDLLLVSEFGQSIRFTADD-EQLRPMGRATAGVKGMRFRDNDQLLSMSVVRDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        +     R G   +         ++   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++   + QI   SR   GVRL + ++G     I   + +
Sbjct: 778 GVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 817


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 16  EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM++++EL+L+ +D++ VDF D Y+  + EP+V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ ++E+L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLIL-GTEEIRKAYTTGRGVIKMR 254

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 255 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L  +++H+  V+ 
Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F LTE Q  A
Sbjct: 374 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +LA  E+  S+L    +    I  E+ EV++ +    
Sbjct: 434 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRDKYGDE- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E++        + +I +E + V ++   +I+          +   V +  
Sbjct: 493 ----RRT---EITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 545

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L A  +  SGR   G AI  L+ +  ++
Sbjct: 546 MGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 605

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L + + KG       +E     + G   + +  ++++  V    
Sbjct: 606 RITAVIQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIGVKFTD 665

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G++ + +   + K + F  D +  M R  +GVR  +  DG   +V+   I   G   +  
Sbjct: 666 GENRIMLGTRHGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMDILKSGSEVLTV 723

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 724 TEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGSVVG 761



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 13/219 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +Q    + +    + + +G ++              L A++  E D L  
Sbjct: 601 VEADERITAVIQVREFKPDRFLFLGTRKGVVKKTPLAEFANIRKSGLRAVNLDEDDELIG 660

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  +RI+L +  GKA T P   + S       ++  I L+   ++V   +  S  +
Sbjct: 661 VKFTDGENRIMLGTRHGKAITFPEDGVRSMGRIARGVRG-ITLSDGDEVVAMDILKSGSE 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L V+  G        E    TR GK  + +   EK   VV +        + ++     
Sbjct: 720 VLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTEKTGSVVGIRVVRGSQELMLITTEGI 779

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC 706
           ++  ++D+I  +SR  +GV+L +  ++  ++ +    + 
Sbjct: 780 VIRTTVDEISLISRNTQGVKLMTIAENDRVASMATMNMT 818


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/774 (29%), Positives = 400/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ NT   + V  + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G
Sbjct: 1   MSDDNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                ++ KSA+ V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ +A   L++NP+       E  ++++ GPDFPT G+I+  +  I +
Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDK-GIHD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGN-RTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ ++F  S ++  F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AH+ EV+ RR+ +R+   + R  +L+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S   + E Q DAIL ++LR L  LE  +I  EL  +  E   + ++L S ++Q   +  
Sbjct: 418 MSLLDVDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKAILASPERQRTIVRD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ E +        RR+       A     ++ +I +E + + I++ G+        
Sbjct: 478 ELTEIVEKYGDE-----RRSQII---AATGDVSEEDLIARENVVITITSTGYAKRTKVDA 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            +S K     +     K+ D ++    + T D IL  +  G+ Y L A  L   S    G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ ++ G        +  +    G   + +
Sbjct: 590 QHVANLLEFQPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           + ++++         D + +V E  + + F+ D   +  M R   GV+   ++D     +
Sbjct: 650 NEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMRFRDN--DQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 708 LSMSVVRDGEFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 761



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  +    + +      A++  E D L  A
Sbjct: 599 QPGEQIAQVIQLESYNDFPYLVLATAHGRVKKSRLLDYESARSGGLIAINLNEDDRLIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S  G++    A +    R  G A   +  +    N  +++  V     
Sbjct: 659 ALCGEEDDLLLVSEFGQSIRFTADD-EQLRPMGRATAGVKGMRFRDNDQLLSMSVVRDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        +     R G   +         ++   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++   + QI   SR   GVRL + ++G     I   + +
Sbjct: 778 GVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 817


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|21228522|ref|NP_634444.1| DNA gyrase subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 415/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +M+E G+     +KKS
Sbjct: 17  GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+IDGDSAAA RYTE R
Sbjct: 77  ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L  ++++ V F   Y+    EP V P++ PNLL NG++GIAVGMAT++P HN
Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LI+NPE  I +L+  I GPDFPTG  I+     I  +Y  GRG  R+RA 
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHIL-GTAGIRSAYMTGRGPIRMRAV 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E+ +    I+VTE+PYQV K++LIE IA+L+  K I  + D+RDES  +   V+  
Sbjct: 256 AEIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +R ++P++++  ++  + M T F +    L  G+ P+ + L  +L+ +L +R E++ +R
Sbjct: 316 LSRGVNPNVVLNQLYKHTQMATTFGVINLALVDGK-PKELNLKQLLEIYLEYRMEIIQKR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NID ++A+I+   N D+ K  ++  F+L E Q  AIL
Sbjct: 375 TLYDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAIL 434

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ L+ + E++  +L S + ++  I  E+ E+K+ +      
Sbjct: 435 EMRLQRLTGLETRKILDELEALVKQIEELRKILASDELKYEIIRTELSELKDKYGD---- 490

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
             RRT     +        + +I +E + V I+N G+I+          +     +  + 
Sbjct: 491 -IRRTRIVHNTEN---VTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGME 546

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++    + T + IL  +  G+ Y      +   S +  G+AI  L++L   + +
Sbjct: 547 MKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRGKAIVNLLELQEGEMV 606

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
              ++   +     L + +  G       SE     R G   + +   +++  V+   G 
Sbjct: 607 NAMISVEEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGIIAVSLDEGDELVKVLLTDGK 666

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
             + +V +  K + FS + +  M R  +GVR  +  +G   +V+    + E  T +    
Sbjct: 667 QEIMMVSKKGKAIRFSEEDVRPMGRTARGVRGMTL-EGPDDEVVSLDLVDETTTLLTVTD 725

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +        + +RGG G +      R+G F+S
Sbjct: 726 NGFGKRTEYSQYPVHRRGGKGVITIVTNLRNG-FVS 760



 Score = 44.7 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 23/226 (10%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                +  L             E  E K +F  +     ++T   E     +A +    +
Sbjct: 592 KAIVNLLELQEGEMVNAMISVEEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGIIAVSL 651

Query: 516 EKEPITV------------VISNRGW--------IRSLKSHSVDLSALHFKE-GDSLKIA 554
           ++    V            ++S +G         +R +   +  +  +  +   D +   
Sbjct: 652 DEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPMGRTARGVRGMTLEGPDDEVVSL 711

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T  +L ++ +G             R  G+ +  ++    N  +          +L
Sbjct: 712 DLVDETTTLLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRNGFVSNVKSVAEDDEL 771

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
           +  S++G    +   +I    R   G   + + S +K+  + ++  
Sbjct: 772 MFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIKN 817


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/755 (34%), Positives = 413/755 (54%), Gaps = 32/755 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+  ++   +KKSAR
Sbjct: 9   EEISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSAR 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS AA RYTE RM 
Sbjct: 69  VVGDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQ 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A L+L+ +D++ VD    Y+E  SEP+V PS+ P LL NG+SGIAVGMAT+IP HN+ 
Sbjct: 129 KLAHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLS 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A  ALIDNP++S+E L++++ GPDFPT GI +   + I E Y  GRG  RVR R  
Sbjct: 189 EVADAITALIDNPDMSVEALMQHVPGPDFPTCGI-IHGTDGIAEGYATGRGKIRVRGRVF 247

Query: 258 VEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           VE+        IVV E+PYQV K+RLIEK+AEL+  K I  +  +RDES ++   +    
Sbjct: 248 VEKGKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGL 307

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   D+++  ++  + +E  F +NM  +     P+++ L  IL+ ++ HR+E++ RR+
Sbjct: 308 KRNQFADVVINQLYKHTQLENTFGINMLAVVNN-RPELLTLKEILEYFILHRKEIIVRRT 366

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GL IA  N+DE++A+IR      + +  ++ +F LT+ Q  AIL+
Sbjct: 367 RFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQFGLTQIQAQAILD 426

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I  E    L +    + +L S +   + I  E+ ++K  F       
Sbjct: 427 MRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIVLDLIKKELADLKAEFGDE---- 482

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   ++    K  L + MI +E + V +S  G+I+          +      +A+  
Sbjct: 483 -RRT---QIMGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYRKQRRGGRGKTAMGT 538

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           +E D +     A + D  L  +  G+ +      +        G AI  L++ N  +D+ 
Sbjct: 539 REDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRASRGTAIVNLLNFNEGEDLA 598

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T      +     +L+ + KG     +  +       G   L ++  +++  V    G  
Sbjct: 599 TVLSVPEFSPGLFVLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDELIAVRITDGSW 658

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGR 717
           +V +  +N K + F    +  M R  +GV+  + +      V+  ++   G T +     
Sbjct: 659 NVFLGSQNGKSVRFLESDVRPMGRLARGVKGMTLEKD--DHVVGMEVLSHGNTLMTITEN 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +        + +RGG G +  K   R+GK ++
Sbjct: 717 GYGKRTEIDEYPVNRRGGKGVITIKTTKRNGKVVA 751



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++ + +G ++              L AL   +GD L        +  + L S +GK+  
Sbjct: 612 VLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDELIAVRITDGSWNVFLGSQNGKSVR 671

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++         ++ +  L  +  +V   V      L+ ++  G     E  E   N
Sbjct: 672 FLESDVRPMGRLARGVKGM-TLEKDDHVVGMEVLSHGNTLMTITENGYGKRTEIDEYPVN 730

Query: 635 TRKGKTFLKVSS---EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + + +     K+  ++ V  D  + ++ +  KL+   +  +  +SR  +GVRL
Sbjct: 731 RRGGKGVITIKTTKRNGKVVAILLVENDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRL 790

Query: 690 QSYKDG 695
              ++G
Sbjct: 791 IGMEEG 796


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/791 (33%), Positives = 405/791 (51%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE  +E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G    +V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-R 683
              +E       GK  +K+   +++  V   +G D V +     K++ F    +  M   
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCN 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR     +G    V+   +  G    + +    Y +           R   G +  K
Sbjct: 718 TTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGLVVGA 786



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   EGD L   
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 686 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 742

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 743 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 802

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 803 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 854


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/755 (33%), Positives = 416/755 (55%), Gaps = 29/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+  ++    KKSARI
Sbjct: 11  QINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 70

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVRLAQ F  R PL+ GQGNFG+IDGDSAAA RYTE RM++
Sbjct: 71  VGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSR 130

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+  L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 131 LAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 190

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A   L+DNP+ S++ L+EY+ GPDFPT G +   +  + ++Y  GRG  ++R R  +
Sbjct: 191 LCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGK-GLYDAYHTGRGTVKMRGRVEI 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE  +G   +V+ EIP+ + KS L+EKIA L+  ++I  + D+RDES      ++    R
Sbjct: 250 EERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIRIVIDLKR 309

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + PD+++ +++  + +E+ F +NM  +     P ++ L   L  ++ HRREV+ RR+ +
Sbjct: 310 GVIPDIVVNALYKFTPLESSFGINMLAVVDN-RPVLLTLKSALSCFVDHRREVVIRRTRY 368

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  +ID+++A+IR   N ++ +  +++ F L+E Q  AIL++R
Sbjct: 369 DLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMATFELSEIQARAILDMR 428

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+  ++ +E  +LL + E   S+L++ +   +++  EIRE++E F        R
Sbjct: 429 LQRLTGLQREELLAEYKDLLQKIEFYKSVLDNSEVLRSEMKREIREIRETFVTP-----R 483

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
           RT     + A      + +I  + + + +S RG+++          K     ++ALH  +
Sbjct: 484 RTEVL--TEALGGIDIEDLIPDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSD 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++  L       + L +  G+ + L    +   S    G  I  L+ L   + + T 
Sbjct: 542 DDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLEEGEWVTTV 601

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ +G       S      + G   + +  ++++ +V  +  D H+
Sbjct: 602 LALREFAEDKYFLFVTRRGMVKRSSASLYARCRKTGLMAVGLREDDELVVVRPIREDNHI 661

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRS 718
            +   +   + FS   I  M R   GV+  + +  D  ++ V+   + +    +  +   
Sbjct: 662 VLATADGFAIRFSCGDIRPMGRVATGVKGIALRRQDSVVAGVVLKDVDQTTEIMSISANG 721

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +     L  L  RGG G +  K   ++G  + +
Sbjct: 722 YGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGA 756



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 18/227 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   + ++ RG ++        +     L A+  +E D L + 
Sbjct: 593 EEGEWVTTVLALREFAEDKYFLFVTRRGMVKRSSASLYARCRKTGLMAVGLREDDELVVV 652

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDST 611
                 + I+L + DG A     G++         ++  I L     +V   V    D T
Sbjct: 653 RPIREDNHIVLATADGFAIRFSCGDIRPMGRVATGVKG-IALRRQDSVVAGVVLKDVDQT 711

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
            +++ +S+ G             +R GK  +      K   VV        D + ++   
Sbjct: 712 TEIMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGAMPVRDNDGLILLTSA 771

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWI 712
            K++   +D++    R   GV L    +G  + V+ F  + EG   +
Sbjct: 772 NKIVRIGVDEVRSKGRATMGVMLVRLDEG--ARVVGFDRVDEGGQIV 816


>gi|333030660|ref|ZP_08458721.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
 gi|332741257|gb|EGJ71739.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011]
          Length = 859

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 404/765 (52%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD++DGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEDEMKSSYIDYSMSVIVSRALPDVKDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF   ++    EP V P++ PNLL NG SGIAVGMAT++P 
Sbjct: 124 ARLNKMGEEMMQDLYKETVDFDPNFDNTLQEPKVLPARIPNLLVNGASGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  A ++N EI +E L++Y+  PDFPTGG  +     + E++  GRG   +R
Sbjct: 184 HNLSEVIDACQAYLENTEIDVEGLMQYVKAPDFPTGG-FIYGMSGVKEAFETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E  G+    IV++EIPY V K+ LI+ IA+L+  KRI  + ++ DES      ++
Sbjct: 243 ARAEIE-AGQTHEKIVISEIPYNVNKADLIKHIADLVNEKRIEGIANVNDESDRSGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++ ++ +++ F +N   L  GR    + L  ++  ++ HR +V+ 
Sbjct: 302 VDCKRDANANVVLNKLYKMTALQSSFGVNNVALVDGRPH-TLNLRDLVANFVEHRHDVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL+IA  NIDE+I IIR    P   +   ++RF L+E Q  A
Sbjct: 361 RRTQFDLRKAEERAHILEGLIIASDNIDEVIKIIRAAKNPNEAITNLMTRFELSEIQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+  E   ++A   +   +LN+ ++    I  E++EVK+ +    
Sbjct: 421 IVEMRLRQLTGLMQDQLHGEYQEVMARIAEYKEILNNDEKCREVIKAELQEVKDKYGDE- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  + +    +     +P+ + IS+ G+I+              V    
Sbjct: 480 ----RRS---EIVYSSEEFNPEDFYSNDPMIITISHMGYIKRTPLSDFTSQNRGGVGSKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ N 
Sbjct: 533 TDTRDQDFIEHIYPATMHNTMMFFTQMGKCYWLKVYEIPEGSKNSKGRAIQNLLNIDRND 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  ++  +  G        +     + G   + +  ++K+  
Sbjct: 593 AVNAYLRVEDLNDEEFINSHYVIFCTKHGVIKKTLLEQYSRPRQNGVNAITIREDDKVIE 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF---KICE 707
           V    G  ++ +  +N + + F  + +  M R   GVR     + G  +V+     +  E
Sbjct: 653 VRLTNGKCNIVIANKNGRAIRFHEENVRPMGRTATGVRGIRLDEDGQDEVVGMVAIRDLE 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +        +  RGG G        ++GK + 
Sbjct: 713 TETIMVVSEEGYGKRSEVEDYRITNRGGKGVKTMNITEKTGKLVG 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 77/200 (38%), Gaps = 18/200 (9%)

Query: 512 QAMIEKEPI----TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
           + + ++E I     +  +  G I+        +     ++A+  +E D +      +   
Sbjct: 601 EDLNDEEFINSHYVIFCTKHGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRLTNGKC 660

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVS 618
            I++ + +G+A      N+         ++ +      QD V   V      T  ++VVS
Sbjct: 661 NIVIANKNGRAIRFHEENVRPMGRTATGVRGIRLDEDGQDEVVGMVAIRDLETETIMVVS 720

Query: 619 SKGNAFIVEESEIIANTRKGKTF--LKVSSE-EKMKLVVKVTGD-HVAVVGENRKLLIFS 674
            +G     E  +     R GK    + ++ +  K+  +  VT +  + ++ ++   +   
Sbjct: 721 EEGYGKRSEVEDYRITNRGGKGVKTMNITEKTGKLVGIESVTDENDLMIINKSGVTIRLD 780

Query: 675 IDQIPEMSRGK-GVRLQSYK 693
           ++ +  M R   GVRL +  
Sbjct: 781 VEDVRVMGRATQGVRLINLD 800


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/756 (34%), Positives = 415/756 (54%), Gaps = 29/756 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + VS+   L + YL Y+LS I  RAIPD RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L ++D P  ++E L++++ GPDFPT G +    + + ++Y  GRG  +VR +  
Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAG-QGLYDAYTTGRGTVKVRGKVE 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +G   IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES      V+    
Sbjct: 242 IEERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + +E+ F +NM    +G  PQ++ L   L+ +L HRREV+ RR+ 
Sbjct: 302 RGTIPDIVVNALYKYTPLESSFGINMLA-VVGNRPQLLNLKQALEIFLEHRREVIIRRTR 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF+L+E Q  AIL++
Sbjct: 361 YDLRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGRFTLSEAQAQAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E + LL + E   S+L + +   + I  EI E+++ F+       
Sbjct: 421 RLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRSVIREEIGELRDTFATK----- 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
           RRT   E          + +I  E + + +S RG+I+          +     ++ +H  
Sbjct: 476 RRTEVLEEELDGIDI--EDLIPDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTS 533

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ---D 601
           E D ++  L       +LL +  G+ + +    +   S    G  I  L+ L+ ++   +
Sbjct: 534 EDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVTN 593

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           ++T   +      L V+ +G       S      + G   + +  ++++ +V +V    H
Sbjct: 594 VLTVREFAEDRYFLFVTRRGMVKRSSASLYAKCRKTGLIAVGLRPDDELIMVREVDEHCH 653

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           + +   +   + F  + +  M R   GV+  +   KD  ++ VI  +       +  +  
Sbjct: 654 IVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRGKDRVVACVILAEEDTTSMIMSVSAN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +     L  +  RGGVG    K  P++G  + +
Sbjct: 714 GFGKRTKADLYRVQSRGGVGVKNFKVTPKTGDVIGA 749



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 17/217 (7%)

Query: 514 MIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++   + ++ RG ++        K     L A+  +  D L +         I+L +
Sbjct: 599 EFAEDRYFLFVTRRGMVKRSSASLYAKCRKTGLIAVGLRPDDELIMVREVDEHCHIVLTT 658

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAF 624
            DG A      ++         ++  I L     +V   +    D+T  ++ VS+ G   
Sbjct: 659 GDGMAIRFQCEDVRPMGRSATGVKG-IALRGKDRVVACVILAEEDTTSMIMSVSANGFGK 717

Query: 625 IVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
             +       +R G           + + +  +     D + ++    K+L   ++ +  
Sbjct: 718 RTKADLYRVQSRGGVGVKNFKVTPKTGDVIGAMPVRDDDALVLLTSTNKILRMGLNDVRS 777

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + R   GVRL    +G +  V+ F   +    +D   
Sbjct: 778 VGRATQGVRLVRLDEGAL--VVGFDRIDEREVVDGEE 812


>gi|153007330|ref|YP_001381655.1| DNA gyrase subunit A [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/788 (31%), Positives = 410/788 (52%), Gaps = 63/788 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 27  QVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE+R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLER 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+ +L  +D++ VD+   +++   EP+V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   LI+NP+++I +L+ +I GPDFPT GI ++ R+ I  +Y  GRG  +VRAR  +
Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAGI-IQGRDGIRAAYEKGRGTIQVRARASI 265

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   +     IVVTEIPYQV K++L+E IA+L+  KR+  + D+RDES+ +   V+    
Sbjct: 266 EVHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+T F + +  +  G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDAVAQVVLNNLYAHTQMQTGFGVTLLAI-DGGQPRILNLKELLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F ++    R  IL GL IA  ++DEII +IR     D  +  +++RF+L+E Q  AIL +
Sbjct: 385 FELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITRFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K     IA E+REVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKIILRLKEILASEKVLMEVIAGELREVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          +      +    +
Sbjct: 500 RRT---EILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLYRAQRRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L+  + +  
Sbjct: 557 DEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGKPIVNLVQLSQGEKVAA 616

Query: 605 AFVY-------------------------------DSTCKLLVVSSKGNAFIVEESEIIA 633
                                              +    + + + +G        +   
Sbjct: 617 ILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMATRRGLIKKTRLEQFSR 676

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
               G   L +   +++     + G  HV +       + F    +  M R   GV+  +
Sbjct: 677 PRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEESDVRAMGRTAYGVKGIT 736

Query: 692 YKDGGI---SDVICFKICEGL---TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            + G     ++ I     +G    T +      Y +        +  RGG G +  K   
Sbjct: 737 LEPGDAVVSAETIPAAPPQGEPAPTILTVTRNGYGKRTELAEYRVQSRGGKGIITIKTTE 796

Query: 746 RSGKFLSS 753
           R+G  +++
Sbjct: 797 RNGPVVAA 804



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 27/207 (13%)

Query: 521 TVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKI--ALHAHTTDRILLLSTDGKA 572
             + + RG I+  +        +  + AL  +E D L     +   +   +LL +  G A
Sbjct: 657 VFMATRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSH--VLLSTAQGMA 714

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNA 623
                 ++   R  G     +  I L     +V+A          +    +L V+  G  
Sbjct: 715 IRFEESDV---RAMGRTAYGVKGITLEPGDAVVSAETIPAAPPQGEPAPTILTVTRNGYG 771

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIP 679
              E +E    +R GK  + + + E+   VV        + V ++     L+      I 
Sbjct: 772 KRTELAEYRVQSRGGKGIITIKTTERNGPVVAAALVSDVEEVMLITNGGMLIRMPAKGIS 831

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKI 705
            + R  +GVRL + +      V   ++
Sbjct: 832 VIGRNTQGVRLITLESKEEEVVGVARV 858


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/756 (37%), Positives = 441/756 (58%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  ++ RF 
Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+       G   +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEG-GTLVL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            +  R+ +   +DL  + G+RG  GS +P+GF R  
Sbjct: 709 QAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVD 744


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/784 (33%), Positives = 407/784 (51%), Gaps = 57/784 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    VSL   + + YL YA+S I  RA+PD RDG KPVHRR+++AM EMG D+   +KK
Sbjct: 6   KETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++ + VDF   Y+E++ EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI  A +AL+D+ ++   +L   + GPDFPT GI++ +  +I E+YR GRG   +RA
Sbjct: 186 NLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAI-EAYRSGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E   + G   I V+E+PYQV K++LIE+IAE++  KR+  + D+RDES +    + 
Sbjct: 245 RAEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIA 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +++ F +NM  L  G  PQ + L   LK +L HRREV+ 
Sbjct: 305 IELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGA-PQTLGLRDALKAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420
           RRS F ++    R  IL+GL +A +N+D +IA+IR    P                    
Sbjct: 364 RRSIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAAL 423

Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L
Sbjct: 424 LAERGEPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    I  E+  +++ +  +     RR+   E+         + +I +E + V  +
Sbjct: 484 GSDARLMAVIRAELVAIRDQYGDA-----RRS---EIVADTGVIANEDLIAEENMVVTFT 535

Query: 526 NRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+        + +       A   KE D ++    A T   +L  S  GK +    
Sbjct: 536 HAGYIKAQPVTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKV 595

Query: 578 GNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L  SGR   G+ I  L+ L  ++ I T      +     + +V++ G        E  
Sbjct: 596 YQLPQSGRSARGKPIVNLLSLAPSEGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYS 655

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
               +G   + +   +++  V    G     +       + F  D++  M R  +GVR  
Sbjct: 656 RPRSQGINAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARGVRGI 715

Query: 691 SYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           S        VI  +I +     + +  + Y +  N        RGG G +  +   R+G+
Sbjct: 716 SLDAD--DRVISAQIVDPDQVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARNGQ 773

Query: 750 FLSS 753
            + +
Sbjct: 774 VVGA 777



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 13/218 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
            S      L     ++     +++  G ++        +  S  ++A++   GD L    
Sbjct: 618 PSEGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYSRPRSQGINAINLDPGDRLVAVC 677

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            +      +L +  G A   P   +         ++  I L+ +  +++A + D    +L
Sbjct: 678 LSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARGVRG-ISLDADDRVISAQIVDPDQVIL 736

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLL 671
             ++KG   +    E     R GK  + + +  +   VV        D + +V     L+
Sbjct: 737 TATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARNGQVVGALAVKESDELMLVSNGGTLI 796

Query: 672 IFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICE 707
             ++  I    R  +GVRL     D  ++ +      +
Sbjct: 797 RIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQ 834


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/827 (33%), Positives = 410/827 (49%), Gaps = 100/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ K
Sbjct: 6   KEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+
Sbjct: 66  SARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPE+ I+ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ++ L  IL+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTHMESVFGINMVALVDG-RPQLLNLKQILQAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLL 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE QV  IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S       I  E+ +++E +      G  R T    S  D   L   +I  
Sbjct: 484 IVGLIRILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTST 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + L    L        G  I   I L   + +        Y     +   + +G   
Sbjct: 596 GKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    G+  V +   N K + FS + +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT-------------------------------- 710
              GVR     +G   +V+   I E  T                                
Sbjct: 716 TATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIGPTQD 773

Query: 711 ----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    Y +           RG  G +  +   R+G+ +++
Sbjct: 774 DILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L      +       + +G ++                A++  +GD+L
Sbjct: 622 IPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LL +++GK        + S       ++  I L   +++V+  + +  
Sbjct: 682 IGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVRG-IKLTEGEEVVSLIIAEPA 740

Query: 612 CKL-----------------------------------LVVSSKGNAFIVEESEIIANTR 636
             +                                   L  +  G       +      R
Sbjct: 741 TGVDMLEEAEETADDDIQTANTADSVHIGPTQDDILCILTATENGYGKCTPLAHYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    +  V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
             +G     +
Sbjct: 861 LSNGEKLQAV 870


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 412/762 (54%), Gaps = 30/762 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ + E G+    
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPLI GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 123 YTEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+I++ +L+E + GPDFPT GII+  +  I  ++  GRG  
Sbjct: 183 IPPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIIL-GKSGIRRAFETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTE+PYQV K+R+IEKIAEL   K+I  + D+RDE++    
Sbjct: 242 QMRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L+E+L H++
Sbjct: 302 VRVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNG-RPKLISLKEALEEYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII +IR  +  K  M     +F L+E 
Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQFKLSER 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+SE   L+A  E++  +L   ++    +  E+ +++E +
Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEILADEEKLLQIVRNELIDIRERY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R +  ++   D     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDERRSEIQLGGLD-DIEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++++ I T             L+  + KG       S      + GK  +   +++++  
Sbjct: 594 DNDESISTMIAVKDLESEDDYLVFATRKGRVKRSALSNFSHINKNGKIAISFKNDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGL 709
           V    G+   ++   +  L+ F+   +  + R   GV+  + + D  +  +         
Sbjct: 654 VRLTDGEQDILIGTSHASLIRFNETTLRPLGRTAAGVKGITLREDDKVIGLDVTNAESDE 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +      Y +        L  RGG G        R+G  +
Sbjct: 714 EILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERNGNIV 755



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 14/205 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + +G ++     +          A+ FK  D L     
Sbjct: 597 ESISTMIAVKDLESEDDYLVFATRKGRVKRSALSNFSHINKNGKIAISFKNDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCKL 614
                 IL+ ++           L         ++  I L  +  ++   V   +S  ++
Sbjct: 657 TDGEQDILIGTSHASLIRFNETTLRPLGRTAAGVKG-ITLREDDKVIGLDVTNAESDEEI 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G        +   + R GK     +  E+   +V +T     + + VV  +  +
Sbjct: 716 LVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERNGNIVCITSVTGEEDLMVVTNSGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKD 694
           +   ++ I +  R   GVRL    +
Sbjct: 776 IRIDVEDISQNGRAAQGVRLIKLGE 800


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/758 (36%), Positives = 452/758 (59%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S     + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MHESFDPGLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +   D+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++ +L E+I GPDFPT   IV  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGTLRMRALYRVEDGD-----VVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM+ +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L+GLLIA+LN+DE+I IIR+ED+PKPV++ RF+
Sbjct: 356 EWLEFRVRTVRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPVLIERFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + L  E++K+  LL S  +    +  E+   
Sbjct: 416 LSEAQADYILDTRLRQLARLEEMKIRGEQEALAKERDKLLGLLGSEARLKKLVRKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E +   +A  +  ++  EP+TVV+S +GW+R  K H +D +A
Sbjct: 476 AETYGDA-----RRSPIVERAE-ARALSETELLPTEPVTVVLSEKGWVRCAKGHDIDPAA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K A    +    + + + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKSGDTFKAAAQGRSNQYAVFIDSSGRSYSLAAHSLPSARGQGEPLTGRLAPPPGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+ +  ++ A  + GK  L + +  ++     +     D
Sbjct: 590 ECVLLPDDEALYVLASDAGYGFVAKGEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVIC--FKICEGLTW-ID 713
            +A V    +LL+F + ++P++++GKG R+ +     ++   + +C    + E  T  + 
Sbjct: 650 WLAAVTSEGRLLLFRVAELPQLAKGKGNRIIAIPGARVASREEYLCDFVVLSERATLQLQ 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R+ +    DL  + G+RGG G+ +P+GF R    L
Sbjct: 710 AGKRTLSLKPADLEHYRGERGGRGNKLPRGFQRVDALL 747


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/749 (35%), Positives = 410/749 (54%), Gaps = 32/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ Y+ YA+S I  RAIPD+RDG KPVHRR++ AMSEMG  +   +KKSARIV
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G++IGK HPHGD + YD++VRLAQ F  RYPLI GQGNFG+ID D  AA RYTE RM ++
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            E IL  +++D VDF   Y+E   EP + PS+ P LL NGT+GIAVG+AT+IP HNV E+
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +ALI NPE+++E+++++I GPDFPT G  +  RE I+ +YR GRG  R+RA+  +E
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAG-FINGREGIISAYRTGRGIIRLRAKVVIE 250

Query: 260 E-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           +        IVVTEIPYQV K+ LIEKI+EL+  K+I  + D+RDES  +   ++    R
Sbjct: 251 KNERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  ++  + ME+ F + M  +  G+   V  L  ILK ++  R+ V+ RR++F
Sbjct: 311 DENSNVILNQLYKHTQMESTFGIIMLAIENGQPH-VFNLIEILKSFIEFRKVVIVRRTTF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +     R  IL+GL+IA  NIDE++A+I+    P+       SRFSLT+ Q  AIL++R
Sbjct: 370 EVNKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSRFSLTDIQARAILDMR 429

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE+ +IK E D LL E E++  +L+  ++    I  E+ E+ + +        R
Sbjct: 430 LQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVIISEMEEIIDRYGDE-----R 484

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   E+  + +    + MI +E + V  S  G+I+          +        +  KE
Sbjct: 485 RT---EIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVGMMTKE 541

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D ++    A T D +L+ +  G+ Y L    +        G+ I  LI++  ++ +   
Sbjct: 542 EDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIGPDERVAAV 601

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    +++ +  G     + +        G   L +   +++  V    GD  V
Sbjct: 602 LPVRSFEEGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALSIDEGDELVDVKLTGGDQDV 661

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSY 719
            +     K + F  D I  M R  +GVR  S        VI   I  EG   +  + +  
Sbjct: 662 FLATRKGKAIRFKEDDIRTMGRTARGVRGISMDSD--DAVIGMDIPREGNAIVTVSEKGC 719

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            +        L KRGG G +  +  P+ G
Sbjct: 720 GKRTAVSEYRLQKRGGKGMINLRIVPKGG 748



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 14/219 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   A L     E+    ++ +  G ++     +        + AL   EGD L  
Sbjct: 592 IGPDERVAAVLPVRSFEEGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALSIDEGDELVD 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    + L +  GKA      ++ +       ++  I ++ +  ++   +      
Sbjct: 652 VKLTGGDQDVFLATRKGKAIRFKEDDIRTMGRTARGVRG-ISMDSDDAVIGMDIPREGNA 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRK 669
           ++ VS KG       SE     R GK  + +        +  +++VTG+  + ++  + K
Sbjct: 711 IVTVSEKGCGKRTAVSEYRLQKRGGKGMINLRIVPKGGLVADILQVTGEEDLLLMSNSGK 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++   ++ +P + R  +GV+L          ++     E
Sbjct: 771 IIRMKVEDVPLIHRVTQGVKLIEL--DAEEQLVGMTSAE 807


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 412/764 (53%), Gaps = 34/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+  QGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 242 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 302 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 360

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF L+E 
Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEK 420

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T  ++   +     + +I +E I + +S+  +I+               
Sbjct: 481 ------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGR 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  +   I+L
Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +++ I T             L+  + +G       S      R GK  +    ++++  
Sbjct: 594 ENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIA 653

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +     
Sbjct: 654 VRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDVAHANS 711

Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               +      Y +        L  RGG G        R+G  +
Sbjct: 712 VDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 755



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 597 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 715

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 716 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 775

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 776 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 808



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 91/250 (36%), Gaps = 31/250 (12%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIACEIREVKEIF------- 486
           R+  L+  E      EL         ++++ L + +     IA +  E ++ F       
Sbjct: 566 RVYKLKGYE----VPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFATKR 621

Query: 487 --------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
                   S  + + R           D+    +    +E I +  S+   IR       
Sbjct: 622 GVVKRSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLR 681

Query: 533 -LKSHSVDLSALHFKEGDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            L   +  +  +  +EGD +      HA++ D +L+++ +G     P  +       G+ 
Sbjct: 682 PLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+       N ++V          L++V++ G    ++ ++I  N R   G   +++  +
Sbjct: 742 IKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDD 801

Query: 648 EKMKLVVKVT 657
           + +  V KV 
Sbjct: 802 QFVSTVAKVK 811


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/776 (30%), Positives = 394/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    ++N     E + E ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + + Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 AGLIELLDIDDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ +    +     RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIVDKHGDA-----RRTRIV---PADGEVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +       T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + S+  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   + +   
Sbjct: 652 INLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNEDDR 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +     +    + ++G  Y +  +     +  RGG G L  +   + G  + +
Sbjct: 712 LLSLNVVRPDTYLLVATSG-GYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGA 766



 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ +EGD L  A
Sbjct: 604 QPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNEDDRLLSLNVVRPDT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
            LLV +S G A      E     R GK  L +        +   + V  D  +  +    
Sbjct: 723 YLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 783 GVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIARNADED 823



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 2/136 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F E D L           +L+ ++ G A              G+ 
Sbjct: 691 LRPMGRATSGVQGMRFNEDDRLLSLNVVRPDTYLLVATSGGYAKRTSIDEYSVQGRGGKG 750

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I  +        +V A + D   +L  ++S G        ++    R  KG   + ++  
Sbjct: 751 ILTIQYDRKRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEG 810

Query: 648 EKMKLVVKVTGDHVAV 663
           + +  + +   +  A 
Sbjct: 811 DTLIAIARNADEDEAA 826


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/768 (31%), Positives = 396/768 (51%), Gaps = 38/768 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 23  VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 83  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 142

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 143 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 202

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    ++NP++    +++ L+E + GPDFPT G+IV   ++I ++YR GR
Sbjct: 203 PPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHGLIV-GTQAIQDAYRTGR 261

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG  C+VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 262 GSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSG 321

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ 
Sbjct: 322 RTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVE 380

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  ++    +
Sbjct: 381 HQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEI 440

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++ E+ E+ 
Sbjct: 441 DEIQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIV 500

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
             +        RRT        D     + +I +E + V I+  G+         RS + 
Sbjct: 501 AKWGDE-----RRTKIV---PFDGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRR 552

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +S    ++ D +       T D +L  +  G+ Y   A  L        G+ +  L
Sbjct: 553 GGKGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEASRVAKGQHVANL 612

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +    ++ I       +      L++ +  G        E  +N   G   + +  E+++
Sbjct: 613 LAFQADEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDEL 672

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
                V   D + +V +N + + F+     +  M R   GV    + D  +  ++  ++ 
Sbjct: 673 VGAALVAPSDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRFSDEDV--LLAMEVV 730

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            EGL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 731 REGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 778



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 15/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 616 QADEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVGA 675

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAF-VYDSTC 612
                +D +LL+S + +A    A +  + R  G A   +I +   ++D++ A  V     
Sbjct: 676 ALVAPSDDLLLVSKNAQAIRFNATD-EALRPMGRATSGVIGMRFSDEDVLLAMEVVREGL 734

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 735 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIHPDDELFAITSNG 794

Query: 669 KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            ++   +  +     R   GV+L    DG     I     E
Sbjct: 795 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 835


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 409/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  M R   GVR  + ++G    V    I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGD-QLVGATMISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++      G + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRL--NGEAKIMTFALVDAAEIKEEKE 814



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 37/256 (14%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  +      +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIIN--------VTKDQEADSYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              D   +   +   +   ++ +  G+      
Sbjct: 614 ATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTE 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R++   +  +  ++ +EGD L  A        +L+L+  G     PA    +    G
Sbjct: 674 TDVRNMGRTATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + I+ L   + N  +           ++V++  G       + I    R   G   ++++
Sbjct: 734 KGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLN 793

Query: 646 SEEKMKLVVKVTGDHV 661
            E K+     V    +
Sbjct: 794 GEAKIMTFALVDAAEI 809


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/759 (37%), Positives = 442/759 (58%), Gaps = 27/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A+++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D PE + + L E++ GPDFPT   I+  R+ I + Y 
Sbjct: 180 VGMATDIPPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW  E     S  IVVT++P+QV  +R++E+IA+ +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARWINE-----SGEIVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ RR  + RR   R+  +  R+ IL+GLL+AYLNIDE+IAIIR EDKPK  ++SRF 
Sbjct: 355 EWLSFRRTTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKPKAELMSRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E+   
Sbjct: 415 LSGEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDELQSILGSEDRLRELIKDELLAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  +  ++  +P+TVV+S +GW+R+ K H ++   
Sbjct: 475 AETYGD-----DRRSPIVERRE-AKAFSETELVSNDPVTVVLSEKGWVRAAKGHDIEPEG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+  +A       + + L + G+AY+L A    S RG GE +   I+       
Sbjct: 529 LSYKAGDAFAMAAKGRNNQQAVFLDSTGRAYSLVAHTFPSARGQGEPLSGRINPPSGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D   ++L+V+  G  F+    ++I+  R GK  + V    K+   V V      
Sbjct: 589 SGLLMGDPARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKP 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
             +  +    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLGAISNEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFAEDDQLE- 707

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           I +  R      +DL  +LG+RG  G  +P+G  R    
Sbjct: 708 IRAGKRKMGLQFSDLEHYLGERGRRGHKLPRGLQRVDAI 746


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/827 (33%), Positives = 410/827 (49%), Gaps = 100/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ K
Sbjct: 6   KEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+
Sbjct: 66  SARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPE+ I+ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ++ L  IL+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLLNLKQILQAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLL 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE QV  IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S       I  E+ +++E +      G  R T    S  D   L   +I  
Sbjct: 484 IVGLIRILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTST 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + L    L        G  I   I L   + +        Y     +   + +G   
Sbjct: 596 GKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    G+  V +   N K + FS + +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT-------------------------------- 710
              GVR     +G   +V+   I E  T                                
Sbjct: 716 TATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDIQTANTAESVHIDPTQD 773

Query: 711 ----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    Y +           RG  G +  +   R+G+ +++
Sbjct: 774 DILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L      +       + +G ++                A++  +GD+L
Sbjct: 622 IPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LL +++GK        + S       ++  I L   +++V+  + +  
Sbjct: 682 IGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVRG-IKLTEGEEVVSLIIAEPA 740

Query: 612 CKL-----------------------------------LVVSSKGNAFIVEESEIIANTR 636
             +                                   L  +  G       +      R
Sbjct: 741 TGVDMLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    +  V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
             +G     +
Sbjct: 861 LSNGEKLQAV 870


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/827 (33%), Positives = 410/827 (49%), Gaps = 100/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ K
Sbjct: 6   KEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+
Sbjct: 66  SARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPE+ ++ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ++ L  IL+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLLNLKQILQAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLL 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE QV  IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +       I  E+ +++E +      G  R T    S  D   L   +I  
Sbjct: 484 IVGLIRILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTST 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + L    L        G  I   I L   + +        Y     +   + +G   
Sbjct: 596 GKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    G+  V +   N K + FS + +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT-------------------------------- 710
              GVR     +G   +V+   I E  T                                
Sbjct: 716 TATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQD 773

Query: 711 ----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    Y +           RG  G +  +   R+G+ +++
Sbjct: 774 DILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L      +       + +G ++                A++  +GD+L
Sbjct: 622 IPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LL +++GK        + S       ++  I L   +++V+  + +  
Sbjct: 682 IGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVRG-IKLTEGEEVVSLIIAEPA 740

Query: 612 CKL-----------------------------------LVVSSKGNAFIVEESEIIANTR 636
             +                                   L  +  G       +      R
Sbjct: 741 TGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    +  V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
             +G     +
Sbjct: 861 LSNGEKLQAV 870


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN     + +  ++++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + +G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F+   +  M R   GVR  + ++G    V    + +    +
Sbjct: 652 LTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGD-RVVGASVVTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAG 750



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 18/222 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G +   +  ++L     +V A V   
Sbjct: 649 NVFLTDGNADVIIGTKYG--YSVRFNE-AVVRNMGRSATGVRGVNLREGDRVVGASVVTD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG       SE     R GK     +  EK   +  ++ V GD  + ++ +
Sbjct: 706 QDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLLTVKGDEDLMIITD 765

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              ++   +  I +  R  +GV++        + ++ F   +
Sbjct: 766 TGVMIRTGVANISQTGRSTQGVKVMRL--DQDAKIVTFTTVQ 805



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGESIQTIINVEQDRSDEAYLFFTTRQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW--------IRS 532
             +RT   E S   +  L+   +  E               ++ +  G+        +R+
Sbjct: 619 LVKRTNVAEFSNIRQNGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A      D +L+++  G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVNLREGDRVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + K+
Sbjct: 739 ANITEKNGPLAGLLTVKGDEDLMIITDTGVMIRTGVANISQTGRSTQGVKVMRLDQDAKI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 393/764 (51%), Gaps = 36/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     ++ K
Sbjct: 19  DRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 79  CARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTEC 138

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+ GIAVGMAT+IP H
Sbjct: 139 RLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPH 198

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+    +  ++N E S E+LLE     I GPDFPT G+IV  R+ I  +YR GRG  
Sbjct: 199 NLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLIV-GRDGIESAYRTGRGSI 257

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R+   VEE  +G   +VVTE+PYQV    LIE IA ++   ++  + +I DE S    
Sbjct: 258 RMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIG 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++F   R     +++ +++  + ++T F +NM  +  G VP+ + LD +++ ++ H+ 
Sbjct: 318 MRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDG-VPRTLRLDQVVRNYIRHQI 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR  +     +  ++    + + 
Sbjct: 377 EVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVARQGLIDLLDVDDI 436

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  EL  +  E      +L   ++Q   +  E+ E+ +  
Sbjct: 437 QAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDILARPERQRQIVRDELTEIVDKH 496

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RR+        D     + +I  E + V I+  G+         R+ K    
Sbjct: 497 GDE-----RRSRLV---ADDGDVTNEDLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGK 548

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +     K+ D +       T D +L  +  G+ Y L A  L        G+ +  L+ L
Sbjct: 549 GVQGATLKQDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEANRNARGQHVANLLAL 608

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y +   L++ +  G        +  +N   G   + +  E+++   
Sbjct: 609 QPDEHIAQVMQIKDYQAAPYLVLATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGA 668

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           V  +  D + +V    + + F+ D   +  M R   GV    + DG     I     +  
Sbjct: 669 VLCSADDDLLLVSAEGQSIRFTADDAALRPMGRATSGVLGMRFNDGDRLLSIGVVQDDKF 728

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +AG  Y +        +  RGG G L  +   R G  + +
Sbjct: 729 VLVATAG-GYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGA 771



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 83/222 (37%), Gaps = 14/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    +  P  V+ +  G ++  +    D +       ++ ++ D L  A
Sbjct: 609 QPDEHIAQVMQIKDYQAAPYLVLATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGA 668

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   ++ +  N    +++  V     
Sbjct: 669 VLCSADDDLLLVSAEGQSIRFTADD-AALRPMGRATSGVLGMRFNDGDRLLSIGVVQDDK 727

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      +     R GK  L +  + +    +  ++    D +  +    
Sbjct: 728 FVLVATAGGYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGALIVGIDDELYAITSTG 787

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++  S  ++ +  R  KGVRL +  D      +     +  
Sbjct: 788 GVIRTSAREVRKAGRQTKGVRLMNLGDNATLQAVARNAEDDA 829


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN     + +  ++++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +      R T   +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A------RRTELMIGEV-LSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + +G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  V +  +    + F+   +  M R   GVR  + ++G    V    + +    +
Sbjct: 652 LTDGNADVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGD-KVVGASVVTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAG 750



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 18/222 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRQGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G +   +  ++L     +V A V   
Sbjct: 649 NVFLTDGNADVIIGTKYG--YSVRFNE-AVVRNMGRSATGVRGVNLREGDKVVGASVVTD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG       SE     R GK     +  EK   +  ++ V GD  + ++ +
Sbjct: 706 QDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLLTVKGDEDLMIITD 765

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              ++  S+  I +  R  +GV++        + ++ F   +
Sbjct: 766 TGVMIRTSVGNISQTGRSTQGVKVMRL--DQDAKIVTFTTVQ 805



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 77/241 (31%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGESIQTIINVEQDRSDEAYLFFTTRQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW--------IRS 532
             +RT   E S   +  L+   +  E               ++ +  G+        +R+
Sbjct: 619 LVKRTNVAEFSNIRQNGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A      D +L+++  G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVNLREGDKVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G         I    R   G   +++  + K+
Sbjct: 739 ANITEKNGPLAGLLTVKGDEDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/791 (33%), Positives = 398/791 (50%), Gaps = 66/791 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R      ++ +++  + M+  F +NM  L     P+++ L   L+ ++ HRREV+ RR
Sbjct: 307 VKRDAVGRGVLNNLYTQTQMQVSFGINMVAL-HQGQPKLLDLKECLEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA +NID II +IR    P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++E F  +     RRT   E++        + +IE+E
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDA-----RRT---EITANTADINIEDLIEQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL   + G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y     + + ++ G    
Sbjct: 598 RMYWMKMYQLAGASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
              +E       G   +  +  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAMGRT 717

Query: 684 GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             GVR       G   V+   +  G    +      Y +           R   G +  K
Sbjct: 718 ATGVRGIKL--AGEDRVVSLIVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIK 775

Query: 743 GFPRSGKFLSS 753
              R+G  + +
Sbjct: 776 VTERNGSVVGA 786



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L      +     + +  G ++        +  +  + A++   GD L   
Sbjct: 626 EADERITAILPVREYAEGVNVFMATASGTVKKTALTEFSRPRAAGIIAVNPNYGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK        + +       ++  I L     +V+  V      +
Sbjct: 686 DLTDGNDEVMLFSVAGKVVRFKEDAVRAMGRTATGVRG-IKLAGEDRVVSLIVPHGEGAI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 745 LTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTL 804

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  +    +GV L    +     G+  V+     E L  ID +
Sbjct: 805 VRTRVSEVSIVGCNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGS 854


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/773 (33%), Positives = 409/773 (52%), Gaps = 33/773 (4%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           MG DN  + +   +    ++       +E+ ++ Y++S I  RA+PD+RDG KPVHRRI+
Sbjct: 65  MGSDNRGMGDDVDIHGGRLQLHEFGHEMEQSFIEYSMSVITARALPDVRDGLKPVHRRIL 124

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+E G+      KKSA  VGEVIGK HPHGD +VYD++VRLAQ F  R PL+ G GNF
Sbjct: 125 YAMNEAGIFPNKPHKKSAWTVGEVIGKYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNF 184

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           GNIDGDSAAA RYTE+R+ + A  +L+ +++D +D++  Y+E   EPVV P++FPNLL N
Sbjct: 185 GNIDGDSAAAMRYTESRLARPAMELLRDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVN 244

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+ GIAVGMAT+IP HN++E   A   LIDNP+ +++ L+  + GPDFPTG +I+ S E 
Sbjct: 245 GSQGIAVGMATNIPPHNLKETIAAVCMLIDNPDATVDDLMTVMPGPDFPTGAVIMGS-EG 303

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG   +RA+  VE    G   +V TE PY V K  L EKIA+L+  KR+  +
Sbjct: 304 IRQAYETGRGIITIRAKAHVESTKTGRNKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGI 363

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      ++    +   P++++ +++  S +++ F +    L  G VP+ + L 
Sbjct: 364 SDMRDESNRKGLRLVIELKQGAIPEVVLNNLYKYSALQSSFGIIDLALVNG-VPRTLTLR 422

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+ ++ H+ +V+ RR+ F +     R  IL+GLL+A  +IDE+I+IIR+         
Sbjct: 423 EMLQHYIDHQVDVVTRRTRFDLAKARARAHILEGLLLALDHIDEVISIIRSSRTDTQASE 482

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ RF  T+ Q  AIL +RLR L  LE  +I+ ELD L    E  + LL   ++    I
Sbjct: 483 RLIERFGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVI 542

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+ E +        RRTT  +          + +I +E + V +++ G+++    
Sbjct: 543 KSEMSEIGEKYGDK-----RRTTISDAP---VVLDVEDLIAEEDMVVTVTHAGYVKRLPV 594

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                 K     +  L  K+ D ++    A T D ++  +  GK Y +    L   S   
Sbjct: 595 ATYRSQKRGGKGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHA 654

Query: 586 HGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G A+  ++ L   +    ++T   + +   L+  ++ G       S+   + R G   +
Sbjct: 655 RGSALVNVLPLGEGEHPTAVITTREFPADEYLMFATANGMVKKTAMSDYDKSRRDGIIAI 714

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  ++++  V +V  G  V +  E  K ++F   ++    R   GVR  + KD     +
Sbjct: 715 NLKRDDELVNVRRVKPGQKVILCSEVGKAILFDESEVRPTGRDTSGVRGITLKDDV--KM 772

Query: 701 ICFKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +I  G    +    R Y +          KRGG G        + G  ++
Sbjct: 773 LGMEITNGNGDLLVMTERGYGKRTPVFEYPEHKRGGQGVATIAMTSKKGNLVA 825



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 15/217 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
              E          +     E +    +  G ++       D S      A++ K  D L
Sbjct: 664 PLGEGEHPTAVITTREFPADEYLMFA-TANGMVKKTAMSDYDKSRRDGIIAINLKRDDEL 722

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                     +++L S  GKA       +  +GR    +    I L  +  ++   + + 
Sbjct: 723 VNVRRVKPGQKVILCSEVGKAILFDESEVRPTGRD--TSGVRGITLKDDVKMLGMEITNG 780

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDH-VAVVGE 666
              LLV++ +G        E   + R G+    +   S +  +     V   H + +V E
Sbjct: 781 NGDLLVMTERGYGKRTPVFEYPEHKRGGQGVATIAMTSKKGNLVACRVVGPQHELMIVSE 840

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              ++      I ++ R   GV++ +  +      + 
Sbjct: 841 EGVVIRVKTADISKLGRATQGVKIMNMGENDKVSAVA 877


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/769 (32%), Positives = 409/769 (53%), Gaps = 34/769 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DN  N N      +  V L+  + + +L Y++S I  RA+PD+RDG KPVHRRI++ M+
Sbjct: 1   MDNEQNQNK--NSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMN 58

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++GLD    + K A  VG+V+G  HPHGD SVYD++VRLAQ F  RY L+ G GNFG++D
Sbjct: 59  QIGLDPSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVD 118

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEARM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG+SG
Sbjct: 119 GDPPAAYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSG 178

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IP HN+ E  +A   LIDNP+  + +++E + GPDFPTGGII+  R  I  +
Sbjct: 179 IAVGMATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIM-GRSGIRAA 237

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VRA+  + E   G + I+VTE+PY+V K+RLIE IA+L+  KRI  + +I 
Sbjct: 238 YATGRGKITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIE 297

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S      +     R   P +++  +F  + ++T F   M  +  G  P+++ L  +L+
Sbjct: 298 DHSDRKGMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGE-PKILSLKEMLQ 356

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++  + EV+ RR+ F ++    R  IL+GL IA   IDE+I IIRN       K  ++ 
Sbjct: 357 CYIEFQAEVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLME 416

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L + Q  AI+ +RL  L  +E+ +I+ E+  L A+ E+   +L S  +Q   +  EI
Sbjct: 417 RFGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEI 476

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            +++  ++       RRT  C VS        + +I +E   + ++  G+++        
Sbjct: 477 MQIRNKYADP-----RRTEICAVSG---EVDIEDLIPQEECVLTLTQFGYVKRLSADTYK 528

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
             +     +S +  +E D        ++ D +L  +  G+ Y L    +  G  +  G  
Sbjct: 529 IQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQSKGVN 588

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  LI ++ ++ + +      +D    L++V+ +G    +E +    + + G   L+++ 
Sbjct: 589 IANLIPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNE 648

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V    G+  V +  +    + F+   I  M R  +GV+  + K+G    V+   
Sbjct: 649 GDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEG--DCVVGMS 706

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  EG   +  +   Y R  +     +  RGG G        + G   +
Sbjct: 707 VVREGGLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYH-TEKYGDVAA 754



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 71/460 (15%), Positives = 152/460 (33%), Gaps = 41/460 (8%)

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETR 338
            IE  AE+I  +    L+  RD +     + +          ++  S       + +  R
Sbjct: 358 YIEFQAEVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER 417

Query: 339 FP---LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           F    +    +   R+ Q+  ++    E                + +  R++EI+K  ++
Sbjct: 418 FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEIM 477

Query: 396 AYLN------IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL-----RLRSLRKLEE 444
              N        EI A+    D    +      LT  Q   +  L     +++       
Sbjct: 478 QIRNKYADPRRTEICAVSGEVDIEDLIPQEECVLTLTQFGYVKRLSADTYKIQRRGGRGV 537

Query: 445 YQIKSELDNLLAE---KEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             +    +++ AE       D +L      + +     E+ E           G      
Sbjct: 538 SGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPE-----GSRQSKGVNIANL 592

Query: 500 CEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
             +S  +K T    + E  +E   V+++ +G I+ ++ ++ + S      AL   EGD L
Sbjct: 593 IPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNEGDEL 652

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                     ++++ +  G A      ++ +       ++ +  L     +V   V    
Sbjct: 653 AWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMA-LKEGDCVVGMSVVREG 711

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVAVVGENR 668
             +L VS  G   +    +    +R GK           +   + V    D + ++ E  
Sbjct: 712 GLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHTEKYGDVAAIKVVNLDDDIIIISEEG 771

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  + + I   +R  KGV +    +G    V   ++  
Sbjct: 772 IIIRIAAESIRVCARPSKGVTVMKV-NGDDRVVTIARVPH 810


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 392/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    +DN E   E     + E + GPDFPT G+IV S + 
Sbjct: 182 IAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGS-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VHDELSEIVDKHGDE-----RRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  + D  + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDY 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 712 L-LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 766



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 82/215 (38%), Gaps = 14/215 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 604 QPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + + +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSSDEDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDYLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     +    
Sbjct: 723 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++  +  Q+ +  R  KGVRL +  +      I 
Sbjct: 783 GVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAIA 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 691 LRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 750

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  ++S G        ++    R  KG   + +  E
Sbjct: 751 VLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEE 810

Query: 648 EKMKLVVK 655
             +  + +
Sbjct: 811 NTLLAIAR 818


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/767 (32%), Positives = 398/767 (51%), Gaps = 41/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ + +   ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K
Sbjct: 11  DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G  HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA RYTEA
Sbjct: 71  CSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   Y+    EP+V PS+FPNLL NG  GIAVGMAT+IP H
Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S  +LLE     I GPDFPT G+IV  R  I E+YR GRG  
Sbjct: 191 NLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIV-GRNGIEEAYRTGRGSI 249

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+RA   VEE  +G   +VVTE+PYQV    L EKIAEL+   R+  + D+RDE SA   
Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDETSARIG 308

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F +NM  +  G VP+ + LD +++ ++ H+ 
Sbjct: 309 QRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMVRYYVEHQI 367

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           +V+ RR+ ++++    R+ +L GLLIA  ++DE+I +IRN    D  +  ++ RFSL+E 
Sbjct: 368 DVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMERFSLSEI 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I  E   L A+   ++++L S  +Q   I  E+ EV E F
Sbjct: 428 QATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAILASPTRQRQIIGEELAEVVEKF 487

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        +     + +I +E + V ++  G+         RS +    
Sbjct: 488 GDE-----RRTRLV---PFEGDMSIEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGGK 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     +E D ++      T   +L  +  G+ Y   A  L        G+ +  ++  
Sbjct: 540 GVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAF 599

Query: 597 NHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I   +    Y++   L++ + +G        +  +N   G   + +  ++++   
Sbjct: 600 GQDERIAEVIAVKDYEAAPYLVLATKRGLCKKTALHDFDSNRAGGLVAINLRDDDELIAA 659

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI---SDVICFKIC 706
             V  GD + +V  N + + F  D   +  M R   GV    +         DV+     
Sbjct: 660 RLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVPGTT 719

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             L    S G  Y +        +  RGG G L  K     G  + +
Sbjct: 720 ADLLVATSGG--YAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGA 764



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 78/229 (34%), Gaps = 15/229 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                  +     E  P  V+ + RG  +    H  D +      A++ ++ D L  A  
Sbjct: 602 DERIAEVIAVKDYEAAPYLVLATKRGLCKKTALHDFDSNRAGGLVAINLRDDDELIAARL 661

Query: 557 AHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               D +LL+S + ++    A +      GR     I +  D       +   V  +T  
Sbjct: 662 VAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVPGTTAD 721

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRK 669
           LLV +S G A     +E     R GK  L    VS+   +   + V   D +  +  N  
Sbjct: 722 LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVDPDDQLYAIASNGG 781

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           +L      +    R   GVRL   + G  +  V      E       AG
Sbjct: 782 VLRTVAKDVRRAQRQTMGVRLIDLESGVQVVGVARNADAEDTDARIDAG 830


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/827 (33%), Positives = 410/827 (49%), Gaps = 100/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     ++ K
Sbjct: 6   KEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI+GEV+GK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGD AAA RYTE+
Sbjct: 66  SARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  ++  +D++ VDF+  Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPE+ ++ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   IVVTEIPYQV K+RLIEKIAEL+  KRI  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ++ L  IL+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLLNLKQILQAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLL 423

Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE QV  IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEI 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +       I  E+ +++E +      G  R T    S  D   L   +I  
Sbjct: 484 IVGLIRILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+         R+ K      +A+  KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTST 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + L    L        G  I   I L   + +        Y     +   + +G   
Sbjct: 596 GKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATRQGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    G+  V +   N K + FS + +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT-------------------------------- 710
              GVR     +G   +V+   I E  T                                
Sbjct: 716 TATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQD 773

Query: 711 ----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    Y +           RG  G +  +   R+G+ +++
Sbjct: 774 DILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERNGRLVAA 820



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L      +       + +G ++                A++  +GD+L
Sbjct: 622 IPLEPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LL +++GK        + S       ++  I L   +++V+  + +  
Sbjct: 682 IGVALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVRG-IKLTEGEEVVSLIIAEPA 740

Query: 612 CKL-----------------------------------LVVSSKGNAFIVEESEIIANTR 636
             +                                   L  +  G       +      R
Sbjct: 741 TGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    +  V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
             +G     +
Sbjct: 861 LSNGEKLQAV 870


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 399/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGA-PKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++ + + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L +    K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLRPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/752 (37%), Positives = 449/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  I+ EWLA
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGLVEIITEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR+ED+PKPV++ RF ++E 
Sbjct: 357 FRRDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPVLMQRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADSLAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  +   +  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GDE-----RRSPLTERAE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    T   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDTFRAAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVI 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVIC---FKICEGLTWIDSAGRS 718
            +  ++L+F +  +P++S+GKG ++ S      +   DV+        +    +    R 
Sbjct: 651 TKAGRMLMFPVADLPQLSKGKGNKIVSIPSAQAASGEDVLSWLFVLPPQTSLTLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  G+L+P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGTLLPRGLQRIDRV 742


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 409/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  M R   GVR  + ++G    V    I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGD-QLVGATMISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 37/256 (14%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  +      +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIIN--------VTKDQEADSYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              D   +   +   +   ++ +  G+      
Sbjct: 614 ATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTE 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R++   +  +  ++ +EGD L  A        +L+L+  G     PA    +    G
Sbjct: 674 TDVRNMGRTATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + I+ L   + N  +           ++V++  G       + I    R   G   ++++
Sbjct: 734 KGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLN 793

Query: 646 SEEKMKLVVKVTGDHV 661
            E K+     V    +
Sbjct: 794 DEAKIMTFALVDAAEI 809


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/760 (35%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ +I +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSEAKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++PA  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 392/763 (51%), Gaps = 36/763 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V ++  ++  Y+ YA+S I  RA+P + DG KPVHRR++++M E G     +F K 
Sbjct: 20  RVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSFVKC 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI+GQGNFG+   D AAA RYTE R
Sbjct: 80  ARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAAAMRYTECR 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +A  +LQ ++E+ VDF D Y+ +  EPVV PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 140 LSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+       ++NP+ + ++    L+E I GPDFPT G+IV  R+ I  +YR GRG  R
Sbjct: 200 LREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLIV-GRDGIESAYRTGRGSIR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VE+  +G   +VVTE+PY V    LIE IA ++   +I  + +I DE S     
Sbjct: 259 MRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDESSDRIGM 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  + ++  F  NM  +  G VP+ + LD I++ ++ H+ E
Sbjct: 319 RIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDG-VPRTLRLDQIVRHYVRHQIE 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E Q
Sbjct: 378 VIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVARAGLIDLLTVDEIQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I  EL  +  E    + +L   ++Q   +  E+ E+ E   
Sbjct: 438 AQAILDMQLRRLAALERQKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHG 497

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT        D     + +I  E + V I+  G+         R+ K     
Sbjct: 498 D-----DRRTRIV---GYDGDVTDEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKG 549

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     K+ D +       T D +L  +  G+ Y L A  L        G+ +  L+ L 
Sbjct: 550 VQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRLKAYELPEANRTARGQHLANLLALQ 609

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            +++I        Y +   L++ +  G       ++  +N   G   + +  ++++   V
Sbjct: 610 PDEEIAQVMQIKDYQARPYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAV 669

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
             +G D + +V    + + F+     +  M R   GV    +  G     +     +   
Sbjct: 670 LCSGDDDLLLVSAEGQSIRFTATDDALRPMGRATSGVLGMRFNSGDKLLALGVIRPDTYL 729

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + + G  Y +        +  RGG G L  +   R G  + +
Sbjct: 730 LVATTG-GYAKRTPIEDYPVQGRGGKGVLTLQYDRRRGTLVGA 771



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 78/202 (38%), Gaps = 14/202 (6%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++  +    D +       ++ ++ D L  A+     D +LL+S +G++
Sbjct: 627 PYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQS 686

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A   ++ +  N    ++   V      LLV ++ G A      +
Sbjct: 687 IRFTATD-DALRPMGRATSGVLGMRFNSGDKLLALGVIRPDTYLLVATTGGYAKRTPIED 745

Query: 631 IIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK  L +  + +    +  ++    D +  +     ++  S  ++ +  R  K
Sbjct: 746 YPVQGRGGKGVLTLQYDRRRGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTK 805

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GVRL +  +      +     E
Sbjct: 806 GVRLMNLGESSTLLAVARNAEE 827


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 398/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A + +ID+      E +IE +L+ I GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N    K  ++  F LTE 
Sbjct: 365 EVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIEAFELTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +   +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEILIIDGKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       RRT+       +     + +I ++ + + ++  G+I+               
Sbjct: 485 SDE-----RRTSIG---FDEFDISMEDLIPRQDVVITMTKLGYIKRMTVDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++      T   I+  +  G+ Y L    +   S    G AI  L+ L
Sbjct: 537 GIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I      D       L + + KG       ++     + G   + +  E+++  V
Sbjct: 597 MPDEKITAMIPIDEYKEGQYLFMATKKGLVKKTPITDYANVRKTGLAAITLREEDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
                D  + +V +  + + F+   +    R   GVR  +  D    +V+  ++  +G  
Sbjct: 657 KFTDQDQDIILVTKYGQCIRFNEKDVRATGRTSMGVRGMNLAD--RDEVVGMQLHTQGTH 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +           RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITEKTGNVVG 756



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 A +     ++     + + +G ++              L+A+  +E D L    
Sbjct: 598 PDEKITAMIPIDEYKEGQYLFMATKKGLVKKTPITDYANVRKTGLAAITLREEDELIEVK 657

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  I+L++  G+       ++ +       ++ + +L    ++V   ++     LL
Sbjct: 658 FTDQDQDIILVTKYGQCIRFNEKDVRATGRTSMGVRGM-NLADRDEVVGMQLHTQGTHLL 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLL 671
           +VS KG        E  +  R GK        EK   VV V      + + ++     ++
Sbjct: 717 IVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITEKTGNVVGVKAVNEDNEIMIINTEGIVI 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               + I  + R   GV+L +  D      I 
Sbjct: 777 RMECNSISVLGRITSGVKLINLNDNATVASIA 808


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 408/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEI-----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +A + +IDN        ++E++LE I GPDFPTGG I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    + ++ ++L+  ++  + ++  F + M  L  G+ P+VM +  +L  +L H+ 
Sbjct: 306 MRIVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALV-GKQPKVMNILELLGYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  ILKGLLIA  NIDE+I IIR        K  ++ +F L + 
Sbjct: 365 DVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEKFELDDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++ E   L+A+ E+++++L   K     I  EI  +K+ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAILADEKLLLGVIREEILVIKDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I KE I + ++  G+I+               
Sbjct: 485 GD-----DRRTSIG---FDEYDISMEDLIPKENIVITMTKLGYIKRMSDDTFKAQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++     +T   I+  +  G+ Y L    +   S    G AI  L+ L
Sbjct: 537 GIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEASRTSRGTAIINLLQL 596

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I      D       L++ + KG        E +   + G   + +  E+++  V
Sbjct: 597 MPGEKITAVIPIDYYRDQDYLIMATKKGLVKKTSLREYMNVRKTGLAAITLRDEDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLT 710
                +  + +  +  + + F+   +    R   GVR  +  D    +VI  + + +G  
Sbjct: 657 KFTDNNQEIILATKYGQCIRFNETDVRATGRNSMGVRGINLAD--RDEVIGMQLVTQGHD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITEKTGNVIG 756



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 12/210 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A +       +   ++ + +G ++              L+A+  ++ D L      
Sbjct: 600 EKITAVIPIDYYRDQDYLIMATKKGLVKKTSLREYMNVRKTGLAAITLRDEDELIEVKFT 659

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                I+L +  G+       ++ +   +   ++  I+L    +++   +      LL+V
Sbjct: 660 DNNQEIILATKYGQCIRFNETDVRATGRNSMGVRG-INLADRDEVIGMQLVTQGHDLLIV 718

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIF 673
           S KG     +  E  A  R GK        EK   V+ +      D + ++  +  ++  
Sbjct: 719 SEKGMGKRTDIHEFTAQNRGGKGVKCYKITEKTGNVIGIKAVDEDDEIMIINTDGIIIRM 778

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
               I  + R   GV+L + KD      I 
Sbjct: 779 LCSGISVLGRITSGVKLINLKDKETVASIA 808


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 400/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGA-PKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++ + + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 400/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGA-PKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++ + + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/769 (29%), Positives = 386/769 (50%), Gaps = 36/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +    
Sbjct: 2   DQTFDNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KK AR+VGEV+GK HPHGD SVY +LVR+AQ +  RY L+ GQGNFG++DGDS AA
Sbjct: 62  TQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R++++ E I+  +D++ VD    +++   EP V P+K PNLL NG +GIAVGMA
Sbjct: 122 MRYTECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P+HN+ E+ +   A IDNP+I  E L++YI GPDFPTG   +   + + ++Y  GRG
Sbjct: 182 TNMPTHNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGA-YIYGLQGVKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +E  G     IVVTEIPY V K+ L+  IA+L    +I  + ++ DES   
Sbjct: 241 RIVMRAKAEIE-SGDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQ 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+  +F ++ +++ F +N   L  G  P+++ L   +K ++ HR
Sbjct: 300 GMRIVVDCKRDANANVLLNKLFKMTALQSSFSVNNIALVKG-RPRLLSLKECVKYFVEHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425
            +V  RR+ + ++    R  IL+GL+IA  NIDE++ IIRN   P     +   RF L E
Sbjct: 359 HDVTIRRTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEARFELDE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI+++RL  L  L   Q+  E D+L     ++  +L++ ++    +  +++EVKE 
Sbjct: 419 LQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNPERCKEVMKADLQEVKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           +        RRT   E+   D     +     +P+ + IS+ G+I+              
Sbjct: 479 YGDE-----RRT---EIIPFDHEFNAEDFYPDDPVVITISHMGYIKRTPLSEFHEQGRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
           +   A   ++ D  +    A   + +L  +  G+ Y      +  G     G AIQ +++
Sbjct: 531 MGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNSKGRAIQNMLN 590

Query: 596 LNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +  +  I             + ++  ++  + +G                G   + ++  
Sbjct: 591 IEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPRANGVIAININEG 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICF 703
           +++  V    G + + +   N + + F  + +  M R   GV        D  +  ++C 
Sbjct: 651 DQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVMGRVSTGVIGMRLDGGDDEVVGMVCV 710

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 T +  +   Y +           RG  G        ++G+ ++
Sbjct: 711 NDPNTETIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITEKTGRLVA 759



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  + +G I+     +        + A++  EGD +      +  + +LL + +G+A  
Sbjct: 617 VVFATKQGIIKKTCLEAYSRPRANGVIAININEGDQVVGVRLTNGHNELLLANRNGRAVR 676

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEII 632
               ++         +  +     + ++V     +   T  ++VVS  G     E  +  
Sbjct: 677 FDENDVRVMGRVSTGVIGMRLDGGDDEVVGMVCVNDPNTETIMVVSENGYGKRSEVEDYR 736

Query: 633 ANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
             +R  K    +S  EK    + + V    + + ++ ++  L+   +  +  M R   GV
Sbjct: 737 KTSRGAKGVKTLSITEKTGRLVAIKVVTDENDLMIINKSGVLIRLKVADVRVMGRATQGV 796

Query: 688 RLQSY--KDGGISDV 700
           RL +   K+  I+ V
Sbjct: 797 RLINLTKKNDSIASV 811


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 416/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WI 712
             G + + +V +N   + F+ + +  M R   GV+  + ++      +  ++  G    +
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLRED--DKAVSMEVVLGDEALL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 30/437 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIVNIIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L+A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLGDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVIC 702
           GV+L    +      I 
Sbjct: 784 GVKLMRTSEEEKIVAIA 800



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 74/219 (33%), Gaps = 23/219 (10%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-------------RADKATLQ 511
           + + ++    I  +  +  + F   T  G  + T                  R D   + 
Sbjct: 588 IENNEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELID 647

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
             M +     ++++  G+        +R +   +  +  +  +E D           + +
Sbjct: 648 VKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLGDEAL 707

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L +S +G             R  G+ +      +    IV A       +L++V+S   A
Sbjct: 708 LSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVA 767

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             +  SEI   +R   G   ++ S EEK+  + K+  + 
Sbjct: 768 IRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/816 (32%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IKELMHILASTERLMEVIREELEMVRDAFGD-----VRRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  L+ L  ++ I        + +   + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNLLPLEESERITAILPVTEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   + +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     +G   +     
Sbjct: 716 ENGNPALDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E S    A L       +    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EESERITAILPVTEFSADKFIFMATGDGTVKKTSLDQFSNVRANGLIAVNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                   I+L S  GK                                  R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPALDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  V    GD   ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAED 854


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/799 (33%), Positives = 409/799 (51%), Gaps = 68/799 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + + + +  +++   L + YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +G D+  
Sbjct: 2   SQLAKEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  IL  +D+D V+F   Y+E +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  A LA ID+  IS+E L++++ GPDFPT GII  S+  I ++Y  GRG  
Sbjct: 182 IPPHNISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSK-GIEQAYGTGRGRI 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  +E +   G   I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDES ++ 
Sbjct: 241 YIRAKANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +L    R    ++++  ++ L+ ++  F +NM  L     P+VM L  IL+ ++ HRR
Sbjct: 301 MRILIELKRDAIAEVILNQLYSLTQLQVSFGINMVAL-DHGQPKVMTLKDILRAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------- 410
           EV+ RR+ F ++    R  IL+ L +A  NID II +IRN                    
Sbjct: 360 EVVTRRTLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGH 419

Query: 411 ------------DKPKPVM--------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                       D  +P             +  TE Q  AIL+LRL+ L  LE   + +E
Sbjct: 420 VTSMLDCVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNE 479

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              LL    ++  +L+   +    I  E   +K  +        RRT   E+        
Sbjct: 480 YKELLNAIHELQKILSDPDRLLEVIREEFLSIKAQYHDP-----RRT---EIKINTADIH 531

Query: 511 QQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S++G+I+                 SA   K+ D ++  L A+T D 
Sbjct: 532 LEDLIPQEDVVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDN 591

Query: 563 ILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  S+ G+ Y L    L        G  I  L+ LN ++ I        Y++   + + 
Sbjct: 592 ILCFSSRGRLYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYETGQYVFMA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G    +   E       G   L +   +++  V    G + V +     K++ FS D
Sbjct: 652 TACGVVKKIALLEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSED 711

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRG 734
            +  M R  +GV            V+   I  G    +      Y +  +        R 
Sbjct: 712 DVRAMGRTARGVGGIRL--AQEDRVVSLIIPRGDGDILTVTANGYGKKTSKEEYPTRSRN 769

Query: 735 GVGSLVPKGFPRSGKFLSS 753
           G+G +  K   R+G  + +
Sbjct: 770 GMGVISIKVNGRNGNVVGA 788



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 68/181 (37%), Gaps = 12/181 (6%)

Query: 491 DLGRRRTTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540
           +  R R+T       D     +   + +     ++ S++G +        R++   +  +
Sbjct: 664 EFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAMGRTARGV 723

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             +   + D +   +       IL ++ +G           +   +G  +  +     N 
Sbjct: 724 GGIRLAQEDRVVSLIIPRGDGDILTVTANGYGKKTSKEEYPTRSRNGMGVISIKVNGRNG 783

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG 658
           ++V A   D    L++++  G       SE+ + +R  KG T ++  + EK+  + ++  
Sbjct: 784 NVVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEKVVGLQRLVE 843

Query: 659 D 659
           D
Sbjct: 844 D 844


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 403/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKELIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F  + +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 403/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKELIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K+ +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F  + +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 401/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGG-YIYGMSGVREAYMTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEIETSST-HDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E+K  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKTKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PETETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D  T  ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPETETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/761 (33%), Positives = 420/761 (55%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++ +  V +   ++  +L Y++S I ERA+PD+RDG KPVHRRI+HAM+E+G+    
Sbjct: 2   DINKDKLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGD AAA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ ++++ VDF   Y+ E+ EP V P++FPNLL NG+ GIAVGMAT+
Sbjct: 122 YTEARMSKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ E  +A  A++DNP+I++ +L++ YI GPDFPTGG+I+  R  I ++Y  GRG 
Sbjct: 182 IPPHNLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMIL-GRAGIRQAYETGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  +EE+  G   IVVTE+PYQV K+ LI KIA+L+  K+I  +  + DES  + 
Sbjct: 241 IMIRCKHHLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    + +  D+++  +F ++ ++T F +NM  L     P+ M +  +L  ++ H+ 
Sbjct: 301 IRIVIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRS-PKQMGIKELLGHYIDHQI 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---IRNEDKPKPVMVSRFSLTEN 426
           +V  RR+ + ++  + R  IL+GL IA  +IDEII I    +N+ + +  ++  F L+E 
Sbjct: 360 DVTVRRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMENFELSEI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL +RLR L  LE  +I++E   LLA    +  +L +  +    I  E+ EVK  +
Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDILANHDRVLQIIRDELTEVKNKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E+S AD     + +I  E I + ++  G+I+               
Sbjct: 480 GDE-----RRT---EISDADYDMQDEDLIPVEDIVITMTTNGYIKRMPTDTYHTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D +++ +   T D +LL +  GK Y +    +   S    G  +  L++L
Sbjct: 532 GIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAKGLPVVNLLNL 591

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + ++ +              L+ V+  G    V  +E  +  + GK  + +   +++  V
Sbjct: 592 DKDEKVKALVPMKVDHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGV 651

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            + TGD  + + G N K + F  D +  M R   GV+  +     +  +   +  +G   
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGVRPMGRSASGVKGFNVDGAVVVGMATSR--DGTHL 709

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        +  RG  G       P++G  +S
Sbjct: 710 LAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGDLVS 750



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 15/227 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +     KA +   +  +    + ++  G ++ + S            A+  +EGD L   
Sbjct: 592 DKDEKVKALVPMKVDHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK 613
                 D I++  ++GKA       +   R  G +   +   N     +V          
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGV---RPMGRSASGVKGFNVDGAVVVGMATSRDGTH 708

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTGDHV-AVVGENRK 669
           LL VS  G        E    TR  KG   + ++ +   +  V  V GD    +V  +  
Sbjct: 709 LLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGDLVSVRAVNGDEDAMIVTNSGI 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           ++   +D+I   SR  +GV+L +  +  +   +     +     D+A
Sbjct: 769 IIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQAEEAKDTA 815


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/762 (31%), Positives = 399/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E SIE +L+ + GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILEMLNYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN       K  ++  F LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +   +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIKEEILVISGKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I ++ + + ++  G+I+               
Sbjct: 485 GD-----DRRTSIG---FDELDLSTEDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      T + I+  +  G+ Y +    +        G AI  L+ L
Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG       ++     + G   + +  ++++  V
Sbjct: 597 MPDEKITAMIPIREYEDGKYLFMATKKGLVKKTPITDYANVRKTGLAAITLREDDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
                +  + +V +  + + F    +    R   GVR  +  D    +VI  ++  +G  
Sbjct: 657 KITDNEKDIIMVTKYGQCIRFKEQDVRSTGRTSMGVRGMNLSD--RDEVIGMQLHTQGDY 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++ +   +           RGG G    K   ++G  + 
Sbjct: 715 LLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITEKTGNVIG 756


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/776 (32%), Positives = 429/776 (55%), Gaps = 37/776 (4%)

Query: 4   DNISNSN--------TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHR 55
           DN ++ N        T   E++  V +   +++ Y+ YA+S I  RA+PD RDG KPVHR
Sbjct: 5   DNYNDDNSGEIDVQETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHR 64

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M E G+ +   +KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPL+ GQ
Sbjct: 65  RILYSMKEAGITYDKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQ 124

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+IDGDSAAA RYTE RM +++E +L  +D++ V F+  Y+   +EP V P+K PNL
Sbjct: 125 GNFGSIDGDSAAAMRYTEVRMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNL 184

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           + NG++GIAVGMAT+IP HN++E+ +  L +IDNP++SI +L   I GPDFPT G I+  
Sbjct: 185 IVNGSTGIAVGMATNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTIL-G 243

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            E I  +Y  GRG  ++R+   +EE+      IVV+E+PYQV K+ LIE IA L+  K+I
Sbjct: 244 TEGIKSAYETGRGRIKIRSVADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKI 303

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES  +   ++    R+ +P++++  ++  + ++  + +    L  G VP+V+
Sbjct: 304 QGISDLRDESDREGIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVDG-VPKVL 362

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---K 412
            L  +L+ +L HR +V+ +RS ++++  + R  IL GL I   N+DE+I+ IRN     +
Sbjct: 363 NLYELLQIYLNHRMDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPE 422

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  ++ +F L E Q  AIL++RL++L  +E+ +I+SE + L+ +   +  ++ S  +++
Sbjct: 423 AKEGLIEKFQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDSRKY 482

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           N I  E+ E+KE ++       RRT   ++  +D+   ++ +I +E + + I+N G+I+ 
Sbjct: 483 NIIKDELTELKENYADE-----RRT---DIQSSDEELSEEDLIPEEDVLITITNSGYIKR 534

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                          ++ ++ K+ D ++    A T D +LL +  G+        +  G 
Sbjct: 535 LPVTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQGS 594

Query: 584 -RGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +  G+A+  L +L +++ +   +T   +     LL+ +  G       S      + G 
Sbjct: 595 KQSRGKALVNLFELENDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSFKTRKKSGL 654

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGG 696
             + ++  +++  V+   G + + +V    K + F+   +  M R   GVR      D  
Sbjct: 655 IAINLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLNPDDR 714

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I  +      E    +      Y +           RGG G    +  PR+G  ++
Sbjct: 715 IISMDTISDDENAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNGPVVN 770



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 14/211 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLK 552
             E   A  + +       +   ++ +  G ++     S          A++  E D L 
Sbjct: 607 ELENDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSFKTRKKSGLIAINLNENDELV 666

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDS 610
             +     + I+L+S+ GKA      N+       + ++  I LN +  I++      D 
Sbjct: 667 NVILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRG-IRLNPDDRIISMDTISDDE 725

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
             KLL ++  G     +  E     R G+    +    +   VV V      D + V   
Sbjct: 726 NAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNGPVVNVKTVRDDDDIVVTSY 785

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              ++   +  I    R  +GV++ + ++  
Sbjct: 786 QGLVIRIPVKDIRVQGRNTQGVKIMNMREND 816


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/759 (32%), Positives = 417/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +K  ++   +++ +L YA+S I  RA+PD+RDG KPVHRRI++ M+  G+     +K
Sbjct: 6   DSKLKEQNIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RY L+ GQGNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +++ +++D +DF D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP 
Sbjct: 126 ARMSKIAMELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L L  NP+ISI +L+E I GPDFPT G+I+  R  I  +Y  GRG   +R
Sbjct: 186 HNLTEVINGVLELSKNPDISIPELMELIQGPDFPTAGLIL-GRSGIRRAYETGRGSVIMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A+  +E    G   I+++EIPYQV K+RL+EKIAEL   K++  + D+RDE++ ++   +
Sbjct: 245 AKTLIETRPNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++ +++  + ++T F +NM  L  G+ PQV+ +   +  +L H++ V+
Sbjct: 305 VIDVRRDANANVILNNLYKQTPLQTSFGVNMLALVDGK-PQVLNIKQAIYHYLEHQKTVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429
            RR+++ ++  + R  IL+GL IA  +IDEIIA+I    N+ +    +  +F L+E Q  
Sbjct: 364 RRRTAYNLKKAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQFKLSERQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I+SE   LL   +++ ++L   ++    I  E+ E+++ +   
Sbjct: 424 AILDMRLRRLTGLERDKIESEYQELLKYIDELRAILADEEKLLQIIREELIEIRDKYGDE 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT        D     + +I++E I + +S+  +I+                + 
Sbjct: 484 -----RRTEIVAGGLEDLED--EDLIDEENIVITLSSNNYIKRLPASTYRAQHRGGRGIQ 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            ++  + D +   +   T D +L  +  G+ Y +    +   S +  G  I  +IDL+ +
Sbjct: 537 GMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIPIVNVIDLDKD 596

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I T             ++  +  G       S      + GK  +    E+++  V  
Sbjct: 597 ESISTMIAVKNLEREDAYIVFATKHGLIKRSNLSHFSRINKNGKIAINFREEDELIAVRL 656

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWI 712
             G+   ++  ++  L+ F  +++  + R   GV+  S ++G  +  +   +  +    +
Sbjct: 657 TDGNKQLIIGTKHASLIRFEENKLRPLGRTAAGVKGISLREGDEVIGLDVIESNDEHEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 Y +   +    +  RGG G        ++G  +
Sbjct: 717 VVTENGYGKRTKESEYRISNRGGKGIKTATITEKNGNLV 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 12/221 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALH 556
                    + +  ++   V  +  G I+        + +     A++F+E D L     
Sbjct: 597 ESISTMIAVKNLEREDAYIVFATKHGLIKRSNLSHFSRINKNGKIAINFREEDELIAVRL 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-VTAFVYDSTCKLL 615
                ++++ +            L         ++ +     ++ I +     +   ++L
Sbjct: 657 TDGNKQLIIGTKHASLIRFEENKLRPLGRTAAGVKGISLREGDEVIGLDVIESNDEHEVL 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           VV+  G     +ESE   + R GK             +  +  V G + + +V ++  ++
Sbjct: 717 VVTENGYGKRTKESEYRISNRGGKGIKTATITEKNGNLVCITTVNGNEDIMIVTDHGVII 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              + +  +  R  +GVRL    +G     +     E    
Sbjct: 777 RLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVM 817


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 359 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQQDSSDNSYLFFTTRLGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 652 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVITEGDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 750



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 12/206 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q            +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGETIQTIINVQQDSSDNSYLFFTTRLGVVKRTSVTEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVITEGD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK 693
            ++  S+  I +  R   GV++    
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLD 793



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 84/246 (34%), Gaps = 37/246 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  +  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGETIQTIIN--------VQQDSSDNSYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW------ 529
            +     +RT+  E +   +  L+   ++ E               ++ +  G+      
Sbjct: 614 TTRLGVVKRTSVTEFANIRQNGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNE 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +RS+   +  +  ++ ++GD +  A      D +L+++  G      A    +    G
Sbjct: 674 TAVRSMSRIATGVRGVNLRDGDQVVGAGVITEGDEVLVITEKGYGKRTLASEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + I+     + N  +           L+++++ G       + I    R   G   +++ 
Sbjct: 734 KGIKTANITDKNGPLAGLMTVTGEEDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK 651
              ++ 
Sbjct: 794 QNAQIV 799


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A    +DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/781 (30%), Positives = 394/781 (50%), Gaps = 45/781 (5%)

Query: 6   ISNSNTLVEE-------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           +S+ N    E        ++ V +   ++  YL YA+S I  RA+PD+RDG KPVHR+I+
Sbjct: 1   MSDPNQPELEVPEVGAGRIEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M + G      + K +R+VG+V+G+ HPHGD ++YDSLVR+AQP+  RYPLI GQGNF
Sbjct: 61  YGMYDGGYRPDRGYVKCSRVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+   D AAA RYTE+R+  +A  +L+ +DED+VDF   Y+ + +EP V P++ PNLL N
Sbjct: 121 GSPGNDPAAAMRYTESRLDPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVE 234
           G+ GIAVGMAT IP HN++E+  A    +DN E   E+    L++ + GPDFPT  +IV 
Sbjct: 181 GSEGIAVGMATKIPPHNLREVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIV- 239

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++YR GRG  R+RA   VEE  +G  C+VVTE+PYQV    L E+IAEL+   +
Sbjct: 240 GRAGIEDAYRTGRGSIRMRAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGK 299

Query: 295 IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  + DIR+ES+      ++    R     +++ +++  + ++  F  NM  L  G VP+
Sbjct: 300 LNGIADIREESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPR 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + L   ++ ++AH+ EV+ RR+ FR++  + R  IL+GL  A   +D +IA+IR+    
Sbjct: 359 TLNLAQFVRHYVAHQIEVIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSA 418

Query: 414 KPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           +       +L    E Q  AIL+++LR L  LE  +I  EL  + A+   ++ +L   ++
Sbjct: 419 EESKTGLMNLLEVDEIQATAILDMQLRRLAALERQKILDELAEIEAKIADLEDILAKPER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW- 529
           Q   I  E+  +   +        RRT        +     + +I +E + V I+  G+ 
Sbjct: 479 QRQIIKDELGAIVAKWGDE-----RRTKIV---PFEGEVNMEDLIAREDVVVTITRGGYA 530

Query: 530 -------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
                   RS +     +S    K+ D +       T D +L  +  G+ Y   A  L  
Sbjct: 531 KRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPE 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G+ +  L+    ++ I        YD    L++ + +G     + ++  +    
Sbjct: 591 ASRTARGQHVANLLAFQPDEQIAQVMQISGYDVAPYLVLATRRGLVKKTKLTDFDSPRTG 650

Query: 638 GKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK 693
           G   + +   +++     +   D + +V +  + + F      +  M R   GV    + 
Sbjct: 651 GVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASDESLRPMGRATSGVIGMRFV 710

Query: 694 DGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    +++  ++   G+  + +    Y +           RGG G L  K   R G  + 
Sbjct: 711 EA--DELLTMEVVRGGMDILVATSGGYAKRTPVEEYPQQGRGGKGVLTAKITERRGNLVG 768

Query: 753 S 753
           +
Sbjct: 769 A 769



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 15/203 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ + RG ++  K    D      +  ++ ++GD +  A   +  D +LL+S   +A
Sbjct: 625 PYLVLATRRGLVKKTKLTDFDSPRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQA 684

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  S R  G A   +I +   +  +++T  V      +LV +S G A      E
Sbjct: 685 IRFMASD-ESLRPMGRATSGVIGMRFVEADELLTMEVVRGGMDILVATSGGYAKRTPVEE 743

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS-RGK 685
                R GK  L     E+   +   + VT  D +  +     ++   +  +   + R  
Sbjct: 744 YPQQGRGGKGVLTAKITERRGNLVGALSVTPDDELFAITSEGGVIRTPVKPVRRTTDRNT 803

Query: 686 -GVRLQSYKDGGISDVICFKICE 707
            GV+L    +G     +     E
Sbjct: 804 MGVKLMDLPEGVSLLAMARSADE 826


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 405/767 (52%), Gaps = 39/767 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG   +     + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGA-TIYGYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E V      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L  G  P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNG-RPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++   P+  +     RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                      ++  A +    +     + + + +S+ G+I+              V   
Sbjct: 481 RK--------TDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  +
Sbjct: 533 GSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD 592

Query: 600 QDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +          T   + ++  LL  + KG              + G   + +  ++ +
Sbjct: 593 DKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + V +   N + + F    +  M R   GV+  +  +    +V   IC K 
Sbjct: 653 IQVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 713 KEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + +G I+        +     ++A+  +E D L      +  + +++ + +G+A   
Sbjct: 617 LFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEII 632
              A  ++     G     L + N ++ +    + D   + +LVVS +G        +  
Sbjct: 677 HESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQGYGKRSSIEDYR 736

Query: 633 ANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  E   K+  +  VT +  + ++ ++   +   +  +  + R   GV
Sbjct: 737 ITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVIGRATQGV 796

Query: 688 RLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           RL +   ++  I+ V            +       R EN+
Sbjct: 797 RLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENE 836


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 405/767 (52%), Gaps = 39/767 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG   +     + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGA-TIYGYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E V      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L  G  P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNG-RPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++   P+  +     RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                      ++  A +    +     + + + +S+ G+I+              V   
Sbjct: 481 RK--------TDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  +
Sbjct: 533 GSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD 592

Query: 600 QDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +          T   + ++  LL  + KG              + G   + +  ++ +
Sbjct: 593 DKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + V +   N + + F    +  M R   GV+  +  +    +V   IC K 
Sbjct: 653 IQVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 713 KEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 88/233 (37%), Gaps = 16/233 (6%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + +G I+        +     ++A+  +E D L      +  + +++ + +G+A   
Sbjct: 617 LFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEII 632
              A  ++     G     L + N ++ +    + D   + +LVVS +G        +  
Sbjct: 677 HESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQGYGKRSSIEDYR 736

Query: 633 ANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  E   K+  +  VT +  + ++ ++   +   +  +  + R   GV
Sbjct: 737 ITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVIGRATQGV 796

Query: 688 RLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           RL +   ++  I+ V            +       R EN+   +   +  +G+
Sbjct: 797 RLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGREFSENQASLGT 849


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/752 (37%), Positives = 446/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  A +ALID P   +E+LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAIWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA
Sbjct: 297 NPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ 
Sbjct: 357 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE++I+ E D L  E++ + +LL S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEFKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  +   +  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPITERAE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    T   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSYRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDVICFKI--CEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S        G   +    +   +    +    R 
Sbjct: 651 TAAGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLTWLFVLPPQTSVTLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGTSLPRGLQRIDRV 742


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/766 (29%), Positives = 393/766 (51%), Gaps = 36/766 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M ++G      
Sbjct: 2   IDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VGEV+GK HPHGD SVY +LVRLAQ +  RY L+ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++  +D+D VD    ++E   EP V P+K PNLL NG +GIAVGMAT++
Sbjct: 122 TECRLEKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +   A IDN EI+ E+L++YI  PDFPTGG  +   + + ++Y  GRG   
Sbjct: 182 PTHNLSEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGG-YIYGLQGVKDAYETGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I++TEIPY V K +LIE IA+L+   ++  + +  DES      
Sbjct: 241 MRAKAEIE-SDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++L+  +F ++ +++ F +N   L  G  P+++ L   +K ++ HR +V
Sbjct: 300 IVIDVKRDANANVLLNKLFKMTALQSSFSVNNIALVKG-RPRLLTLKDCIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
             RR+ F ++  + R  IL+G++IA  NIDE++ II+    P   +  +  RF+L E Q 
Sbjct: 359 TIRRTKFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQRFNLDELQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  +  L+  ++ ++ D L      + S+L         +  E+ E+KE F  
Sbjct: 419 QAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSILTDDNLCKKVMKDELNELKEKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT       A+     +     +P+ + +S+ G+I+              V  
Sbjct: 479 E-----RRTKII---PAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
             +  +E D  +    A     +L  +  G+ Y L   N+  G     G AIQ L++++ 
Sbjct: 531 KGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNIDP 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  ++  +  G                G   + ++  +++
Sbjct: 591 DDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGVIAINIAEGDEV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKIC 706
             V    G + + +  +N + + F+ + +  M R   GVR       D  +  +I     
Sbjct: 651 VDVRLTNGKNEIIMANKNGRAVRFNEETVRAMGRTATGVRGMKLDGDDDQVVGMIVVNDA 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E    +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 711 EAENVMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITEKTGRVVA 756



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 86/239 (35%), Gaps = 16/239 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           V  +  G I+     +        + A++  EGD +      +  + I
Sbjct: 603 LDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGVIAINIAEGDEVVDVRLTNGKNEI 662

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKG 621
           ++ + +G+A       + +       ++ +     +  +V   V +      ++VVS  G
Sbjct: 663 IMANKNGRAVRFNEETVRAMGRTATGVRGMKLDGDDDQVVGMIVVNDAEAENVMVVSETG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ 677
                   +     R GK    ++  EK   VV +      + + ++ ++   +  ++ +
Sbjct: 723 YGKRSSVEDYRVTNRGGKGVKTLNITEKTGRVVAIKNVNDDNDLMIINKSGITIRLAVSE 782

Query: 678 IPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSAGRS-YNRSENDLLGWLGK 732
           +  M R   GVRL +   K+  I+ V      E         RS +++++ +L   +  
Sbjct: 783 VRVMGRATQGVRLINLSKKNDVIASVCKVMSSELEAAAGEESRSEFDKAQEELENTITS 841


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/760 (35%), Positives = 449/760 (59%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNLRALLV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ P+  ++ RF+
Sbjct: 356 EWLEFRVTTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPRAKLIERFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LLNS  +    +  E+ + 
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLNSEAKLKKLVRTELLQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+T+V+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTIVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V     +
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    + +G T +
Sbjct: 650 WLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--LPDGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/753 (39%), Positives = 468/753 (62%), Gaps = 25/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ +    E+ + +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDLSNF--ESNETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 59  LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 118

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ ++++L+ V +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 119 SFAAMRYTESRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++EI  A + L++NP+  +++LLE++ GPDFPTGG I+ SR  + + Y 
Sbjct: 179 VGMATDVPPHNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYE 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           LG+G  + RAR+ +E+       IVV E+P+QV  S+++E++A  + AK++P++ D+RDE
Sbjct: 239 LGKGQVKARARYRIED-----GEIVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDE 293

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R V+ PK+  +D + +M  +F  +D+E  + +NMNV+ +  +PQV  L   +K
Sbjct: 294 SDHENPTRFVIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R +V+ +R  FR+  +  R+ IL+GLL+A+LNIDE+I IIRNEDKPK  ++ RF 
Sbjct: 354 EWLTFRIDVVRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKPKEELIKRFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q +AIL L+LR L KLEE +IKSE D L  E+E++++LL S ++    I  EI+E 
Sbjct: 414 LSDSQAEAILELKLRHLAKLEEMRIKSEQDELNKEREQLEALLGSDRKLKKLITEEIKEA 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RRT   E     +A  ++ ++  +P+TVV+S +GWIR+ K H +D++ 
Sbjct: 474 IEDFGDE-----RRTPLIERKE-AQAFSEEDLLSNDPVTVVLSKQGWIRAAKGHDIDVTG 527

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   ++    T   ++L++++G+ Y+L A  L S RG GE I   I L     I
Sbjct: 528 LSYKSGDEFLLSAKGRTNQTLVLIASNGRTYSLKAHTLPSARGQGEPITGRISLEKGATI 587

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           V A +       L+ S  G  F+ +  ++ A  + GK  L + S  ++   VKV    GD
Sbjct: 588 VAAVLDSEEAHYLLASDAGYGFVAQLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGD 647

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEG--LTWID 713
            V VV    ++L FS+  +P+M++GKG ++ S      +D    VI     +   L    
Sbjct: 648 KVVVVSNEGRMLAFSVKSLPQMAKGKGNKMLSIPSSRAADREELVIAMATIQSNDLLVAH 707

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           S  R  + +E DL  ++G+RG  G  +P+GF R
Sbjct: 708 SGKRFLSLAEKDLQEYVGERGRRGLKLPRGFQR 740


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 405/767 (52%), Gaps = 39/767 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   +I +E L++YI  PDFPTG   +     + +++  GRG   +
Sbjct: 184 HNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGA-TIYGYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E V      I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L  G  P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNG-RPRLLNLKDLIKAFVEHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++   P+  +     RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      ++ +L +       I  E+ E+K+ F   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKFGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                      ++  A +    +     + + + +S+ G+I+              V   
Sbjct: 481 RK--------TDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A     +L  +  GK Y L    +  G     G AIQ L+++  +
Sbjct: 533 GSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD 592

Query: 600 QDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +          T   + ++  LL  + KG              + G   + +  ++ +
Sbjct: 593 DKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + V +   N + + F    +  M R   GV+  +  +    +V   IC K 
Sbjct: 653 IQVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +     +  RGG G        ++GK ++
Sbjct: 713 KEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 16/220 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + +G I+        +     ++A+  +E D L      +  + +++ + +G+A   
Sbjct: 617 LFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEII 632
              A  ++     G     L + N ++ +    + D   + +LVVS +G        +  
Sbjct: 677 HESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDKEKETVLVVSEQGYGKRSSIEDYR 736

Query: 633 ANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  E   K+  +  VT +  + ++ ++   +   +  +  + R   GV
Sbjct: 737 ITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVIGRATQGV 796

Query: 688 RLQSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           RL +   ++  I+ V            +       R EN+
Sbjct: 797 RLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENE 836


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 399/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGA-PKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++ + + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/761 (31%), Positives = 415/761 (54%), Gaps = 31/761 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              EE  +   L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ M E+G+    
Sbjct: 8   EFFEEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDK 67

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DGDS AA R
Sbjct: 68  PHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMR 127

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L+ +++D +++RD Y+  + EP V PS+ PNLL NG +GIAVGMAT+
Sbjct: 128 YTEARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATN 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H++ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y  GRG  
Sbjct: 188 IPPHHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVL-GKSGIRRAYETGRGSI 246

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  +EE+  G   I++TE+PY V K+RL+E+I++L   K+I  +  + DES     
Sbjct: 247 TVRGRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGM 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R +   +++ +++ L+ +++ F  NM  +  G+ P+++ L  IL+ +L H+ E
Sbjct: 307 RVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIV-GQEPKILSLKEILRHYLNHQEE 365

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RRS F  +  + R  IL+GL +A  +ID I+AI+R+    D  K   ++ + L++ Q
Sbjct: 366 VIRRRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYGLSDKQ 425

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++R+  L  LE  +I +E  +L A  ++++ +L S ++++  I  E+ E+++ F 
Sbjct: 426 AQAILDMRMVRLTGLEREKIDAEYADLQALIKELNEILASEERRYEIIEQELLEIQQKFD 485

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT          +   + +IE+E + + ++  G+I+          +     
Sbjct: 486 NP-----RRTELLVGE--ALSLEDEDLIEQEDVVITLTKNGYIKRLANSEFKTQRRGGRG 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  GK Y      +   S    G  +  L++++
Sbjct: 539 VQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNID 598

Query: 598 HNQDIVTAFVY---DSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             + I         D T + L  ++ +G    V+ S+       G   +++  ++++  V
Sbjct: 599 STEKIQAIISVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLREDDQLIRV 658

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
           V  +G D + +   +   + F  +++  M R   GVR  S +D     VI   I      
Sbjct: 659 VVTSGQDGIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRDDDY--VIGMDILTPERE 716

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  + + Y +        L  RGG G    +   ++G  +
Sbjct: 717 VLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLV 757



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 16/249 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
                +           E E      + RG ++ +K           L A+  +E D L 
Sbjct: 597 IDSTEKIQAIISVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLREDDQLI 656

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +     D I+L +  G A T     + +       ++  + L  +  ++   +     
Sbjct: 657 RVVVTSGQDGIILGTYHGNAVTFHEEKVRAMGRTAAGVRG-VSLRDDDYVIGMDILTPER 715

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LVVS KG       SE     R GK    +   EK   +  +  VTG+  + ++    
Sbjct: 716 EVLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLVCLRTVTGEEDLMIMTNKG 775

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD--VICFKICEGLTWIDSAGRSY--NRSE 723
            ++ F    + +  RG  GVR+       I     I  +  E    + S+  +    +  
Sbjct: 776 VIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDREEEAEETVTSSEETVVSEKVT 835

Query: 724 NDLLGWLGK 732
            +L  +  +
Sbjct: 836 ENLQNFAQE 844


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/816 (32%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IKELMHILASTERLMEVIREELEMVRDAFGD-----VRRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        + +   + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   + +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     +G   +     
Sbjct: 716 ENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L       +    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSADKFIFMATGDGTVKKTSLDQFSNVRANGLIAVNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                   I+L S  GK                                  R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  V    GD   ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAED 854


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/793 (31%), Positives = 413/793 (52%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+KK
Sbjct: 6   KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY ++ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  +D++ VDF D Y+  +  P V P++ P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LAL+ +P++++++L+E+I GPDFPTG I +  R  I+++YR GRG   VRA
Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAI-INGRAGIIQAYRTGRGRIYVRA 244

Query: 255 RWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   + +  RG   I+V EIPYQ+ K++LIE+IAEL+  K+I  + ++RDES +D   V+
Sbjct: 245 RAEVIHDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    D+++ +++  + +++ F +NM  L  G+ P+++ L  IL+ ++ HRREV+ 
Sbjct: 305 IELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQ-PKILNLKEILEAFVRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ + ++    R  +L+GL IA  NID +I +I+   +  + K  +++R          
Sbjct: 364 RRTVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL LRL  L  LE  ++ +E +  L 
Sbjct: 424 LERAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLR 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  +   +L+   +    I  E+ E+   +        RRT   E++ +      + +I 
Sbjct: 484 EIAEYLEILSDADRLKAVIREELEEIVTEYGDE-----RRT---EITASQHDLTVEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E   V IS+ G+ ++         +   +  SA   K+ D ++  L A T   IL  S 
Sbjct: 536 EEDRVVTISHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +        G  +  L+ L   + + +      Y     + + ++ G  
Sbjct: 596 LGKVYWLKVYQIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYTEGHYIFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L++   + +      TGD  V ++    K + F    +  M 
Sbjct: 656 KKTALINFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  +GVR     DG   ++I   I  EG   +  +   Y +           RG  G + 
Sbjct: 716 RTARGVRGIKLGDGH--EMISLIIPREGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVIA 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+G  + +
Sbjct: 774 MQTSERNGTLVGA 786



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 13/220 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      + L      +     + +  G ++        +  SV L AL  +EGD L   
Sbjct: 626 EEGERVTSILPVEDYTEGHYIFMATASGTVKKTALINFARQRSVGLRALELEEGDVLVGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++LLS++GKA     G++ +       ++  I L    ++++  +     ++
Sbjct: 686 AVTTGDCDVMLLSSEGKAVRFKEGDVRAMGRTARGVRG-IKLGDGHEMISLIIPREGGRV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L VS  G     E SE     R  K  + + + E+    +  V    GD + ++     L
Sbjct: 745 LTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERNGTLVGAVQVFDGDQLMLISNQGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
           +    D+I  + R  +GVR+   K D  +  V   +  E 
Sbjct: 805 VRTRADEISVLGRNTQGVRVIRTKTDESLVSVERIEEPED 844


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/777 (30%), Positives = 392/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D +        + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    ++N +   E  L    + + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V  RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 AGLIELLGIDEIQAQAILDMQLRRLAALERERIVDDLAKIEAEIADLEDILAKPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELAEIVDKHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L      
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEALRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATQNGVVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V   + + + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNAD-- 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             ++   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 710 DRLLSLNVVREGTYLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGA 766



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 14/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPEERIAQVIQIKSYEDAPYLVLATQNGVVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + + +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSSEEDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LL  ++ G A      E     R GK  L +       ++   + V  D     +    
Sbjct: 723 YLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++  +  Q+ +  R  KGVRL +  +G     I     E  
Sbjct: 783 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEENA 824


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 399/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+ 
Sbjct: 1   MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M++ F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGA-PKSLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++ + + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/776 (30%), Positives = 391/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A    ++N E   E     ++E + GPDFPT G+IV S + 
Sbjct: 182 IAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGS-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 AGLIELLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E++E+ + +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELKEIADKYGD-----DRRTRIV---PADGEVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D +       T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    N+ I        Y+    L++ +  G       ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V   + D + +V    + + FS     +  M R   GV+   +     
Sbjct: 652 VNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDE 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +     +    + ++G  Y +  +        RGG G L  +   R G  + +
Sbjct: 712 LLSLNVVRPDTYLLVATSG-GYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGA 766



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 14/224 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           + +      +Q    E  P  V+ +  G ++  +    D +      A++ ++GD L  A
Sbjct: 604 QPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVAVNLRDGDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 664 VLCSSEDDLLLVSAKGQSIRFSATD-EALRPMGRATSGVQGMRFNADDELLSLNVVRPDT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
            LLV +S G A      E  A  R GK  L +  + +   +   + V  D  +  +    
Sbjct: 723 YLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++  +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 783 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 826


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 414/762 (54%), Gaps = 36/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++ MS++GL F   FKKS
Sbjct: 7   RIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKPFKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQP+  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA+ +L  +++D +DF+  ++E   EP V P K P+LL NGTSGIAVGMAT++P HN
Sbjct: 127 LKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNMPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +A +DN +I++E+L++YI  PDFPTGGI +   + + ++   GRG   +R  
Sbjct: 187 LTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGI-IYGYQGVKKAMLTGRGRVVIRGV 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   I+VTEIPY V K+ LIEK A L+  KRI  + DIRDES      +++ 
Sbjct: 246 AEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRIVYE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P + +  ++  + +++ F +N   L  G  P+++ L  ++  ++ HR EV++RR
Sbjct: 306 LKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKG-RPEILNLRDMIYHFVEHRHEVIYRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GLLIA  NIDE+I +IR     +  K  ++ +F L+E Q  AIL
Sbjct: 365 TQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEKFELSEIQAKAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  +E  +I +E   +    ++++++L     + + I  E+ E+K+ +  +   
Sbjct: 425 DIRLQRLTAMERDKIVAEHKQISELIKELEAILADKLLRVDIIKEELTEMKDRYGDA--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   ++         + MI  E + + IS+ G+I+              V      
Sbjct: 482 --RRT---DIEHMADDLTDEDMIPVEEMVITISHFGYIKRTSLDEYRTQNRGGVGSRGTS 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
            K+ D  +    A T D +L+ +  GK + +   N+        G AIQ L+ +     I
Sbjct: 537 KKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVAKTAKGRAIQNLLQMEKGDSI 596

Query: 603 VTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                        Y+    L++ + KG              + G   + ++ ++++  V 
Sbjct: 597 RAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRPRQNGIHAITINEDDQLLDVK 656

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLT 710
              G+ ++ +   + + + F  DQ+  M R   GVR  +    D  +  ++C    +  +
Sbjct: 657 LTNGENNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITLDGDDNRVVGMVCVA-RDDAS 715

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G +  +   ++G+ ++
Sbjct: 716 LLVVSETGYGKRSSIEDYRITNRGGKGVITMQITDKTGRLVA 757



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 12/201 (5%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ + +G I+  +  +        + A+   E D L      +  + I+L    G+A   
Sbjct: 617 VMCTEKGIIKKTRLEAFSRPRQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHF 676

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               + S       ++ +     +  +V    V      LLVVS  G        +    
Sbjct: 677 HEDQVRSMGRTAAGVRGITLDGDDNRVVGMVCVARDDASLLVVSETGYGKRSSIEDYRIT 736

Query: 635 TRKGKTFLKVSSEEKMKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R GK  + +   +K   +V     V  D + ++ +    +  S+  +  M R   GVRL
Sbjct: 737 NRGGKGVITMQITDKTGRLVAIKEAVDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRL 796

Query: 690 QSYKDGGISDVICFKICEGLT 710
               +      +     E L 
Sbjct: 797 IKLHEDDSIASVAKVDAESLL 817


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/761 (32%), Positives = 416/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVRLAQ F  RY L+ G GNFG++DGDSAAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKADIEEE-KGRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  +L  ++EV
Sbjct: 300 IVIELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYLEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+        +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 E-----RRT---EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIVKYSSIRKGGLIAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G + + +V +N   + F+   +  M R   GV+  + ++      +   +  E    +
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEKDVRPMGRTASGVKAITLRED--DKAVSMDVVLEDEALL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 138/437 (31%), Gaps = 30/437 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         +++     R+ +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYGDERRTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIVNIIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEIVKYSSIRKGGLIAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEKDVRPMGRTASGVKA-ITLREDDKAVSMDVVLEDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVIC 702
           GV+L    +      I 
Sbjct: 784 GVKLMRTSEEEKIVAIA 800


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/761 (32%), Positives = 415/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + VV +N   + F+ + +  M R   GV+  + +       +   +  E  T +
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLRKA--DKAVSMDVVIEDETLL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 26/435 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         D I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L      V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKA-ITLRKADKAVSMDVVIEDETLLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVIC 702
           +L    +      I 
Sbjct: 786 KLMRTSEEEKIVAIA 800


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 442/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P  ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/762 (32%), Positives = 394/762 (51%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A        + D  E +IE++L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K+I  + D+ D+S+ + 
Sbjct: 246 IRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L  G  P+VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALV-GNQPKVMNLLEMLNYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR        K  ++ RF L+E 
Sbjct: 365 DVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKRFGLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAILADKKLLLGVIKKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I +E + + ++  G+I+               
Sbjct: 485 GD-----DRRTRIG---YDEFDISMEDLIPRENVVITMTKLGYIKRMTMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y + A  +        G AI  L+ L
Sbjct: 537 GIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L + + KG        +     + G   + +  ++++  V
Sbjct: 597 MPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQDYANVRKTGLAAIALREDDRLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLT 710
                 + + +V  +   + F+   +    R   GVR  +  D  +  VI      +G  
Sbjct: 657 KVTDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGVRGMNLTDNDV--VIGMQTASQGTD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  N        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTNMDEFTRQNRGGKGVKCYKITEKTGNVVG 756



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 18/237 (7%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            + +         R T               A +     E+     + + +G ++     
Sbjct: 573 MKAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQ 632

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L+A+  +E D L        T+ ILL++ DG        ++ S       +
Sbjct: 633 DYANVRKTGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGV 692

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + + +L  N  ++          LL+VS KG        E     R GK        EK 
Sbjct: 693 RGM-NLTDNDVVIGMQTASQGTDLLIVSEKGMGKRTNMDEFTRQNRGGKGVKCYKITEKT 751

Query: 651 KLVV---KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             VV    V  D  + ++     ++      I    R   GV+L + K+      + 
Sbjct: 752 GNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVA 808


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/761 (33%), Positives = 412/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVM-GRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +S++G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              TG+   ++G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 14/210 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                    V ++ +G ++  K           L AL  +EGD L         + I++ 
Sbjct: 604 DEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+V+ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIVTEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           R   GV++    D   + ++ F + E    
Sbjct: 783 RATQGVKVMRLDD--TARIVTFALVEPEEV 810



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 30/259 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  +   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASDNNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIIIG-TKFGYSVRFKEDTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L+++  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +     + N ++           ++V++  G       + I    R   G   +++    
Sbjct: 738 KTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTA 797

Query: 649 KMKLVVKVTGDHVAVVGEN 667
           ++     V  + V  V E+
Sbjct: 798 RIVTFALVEPEEVDQVTED 816


>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/853 (31%), Positives = 409/853 (47%), Gaps = 112/853 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   + S S   +  +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MADQDSSVSGGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE R+ +VA  +L  +D+D VDF+D Y+  +SEPVV P+KFPNLL NG 
Sbjct: 121 VDGDPAAAMRYTECRLQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A+++NP +++ +LLE I GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  VEE+  G   ++V+EIPYQV K+ +IEKIAEL+  KRI  + D
Sbjct: 240 SAYETGRGSVVMRGKVEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    +    D+++  ++  S ++T F  NM  L+ GR  Q++ L  +
Sbjct: 300 IRDESDRLGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQML-LSDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           LK ++A R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P       
Sbjct: 359 LKAFIAFREEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQL 418

Query: 418 --------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MQRNWPAMDVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + L  E      +L S  +    I  E+ E++  F+             E+         
Sbjct: 479 NKLGEEIADYLEILRSRPRIQQIIREELLEIRNEFATPRK--------TEIVEGGADLED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLL 615
           L  S+ G  Y +    L  G     G+A+  L+ L   + I +               ++
Sbjct: 591 LFFSSRGIVYKMKVWRLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFS 674
             +++G     + S+     R GK  +K+   + +  V      D V +     + + F 
Sbjct: 651 FATTRGTVRRNKLSDFTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +     +I   I                           
Sbjct: 711 VTDVRVFAGRNSVGVRGINLAED--DHLISMSILRHFEADAEERVTYLKRRRLMRGETED 768

Query: 706 -------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +     +  RGG G   
Sbjct: 769 AGVEDEAEEAGAEGHLSLERYAEMSAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITA 828

Query: 741 PKGFPRSGKFLSS 753
                R+G  +++
Sbjct: 829 MAVTRRNGPLVAA 841



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 73/281 (25%), Gaps = 64/281 (22%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           ++S        +       +    +  G +R  K             A+   EGD +   
Sbjct: 630 QISSIMPLPENEDSWADLDVMFATTR-GTVRRNKLSDFTQVNRNGKIAMKLDEGDGIIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-----FVYD 609
                 D +LL +  G+    P  ++    G        I+L  +  +++      F  D
Sbjct: 689 YTCTENDDVLLTTAAGQCIRFPVTDVRVFAGRNSVGVRGINLAEDDHLISMSILRHFEAD 748

Query: 610 STCKL----------------------------------------------LVVSSKGNA 623
           +  ++                                              L VS  G  
Sbjct: 749 AEERVTYLKRRRLMRGETEDAGVEDEAEEAGAEGHLSLERYAEMSAAEQIILTVSENGYG 808

Query: 624 FIVEESEIIANTR--KGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                 E     R  KG T + V      +     V   D + +V +  +L+   +D I 
Sbjct: 809 KRTSSFEYRVTGRGGKGITAMAVTRRNGPLVAAFPVEDSDQIMLVTDGGQLIRCPVDGIR 868

Query: 680 EMSRGK-GVR-LQSYKDGGISDVICFKICEGLTWIDSAGRS 718
              R   GV    + +D  +  V      E       +   
Sbjct: 869 VAGRATQGVIVFNTAEDEKVVAVERVSEDEDGDTGAESENG 909


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 404/765 (52%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF++ +++   EPVV P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN EI I+ L++YI  PDFPTGG  +     + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGG-YIYGISGVRDAYETGRGRVIMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E        IVV EIPY V K  LIE IA L+  K+I  +  + DES  +   ++
Sbjct: 243 AKAEIESHPT-HDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKLLNLKDLIQLFVEHRHEVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF L+E Q  A
Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMERFQLSEVQARA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E ++L+ +    + +L + +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILVNEELCKKVIKDELIEVKEKYGDK- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  A +    +     + + + IS+ G+I+              V    
Sbjct: 480 ----RRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQNRGGVGSKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A   + +L  +  GK Y L    +  G     G AIQ L++++ + 
Sbjct: 533 SETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIDADD 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  +L  +  G        +     + G   + +  ++++  
Sbjct: 593 VVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIE 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICE 707
           V    G + + +   N + + F    + EM R   GVR  +  + G  +V   IC K   
Sbjct: 653 VRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPL 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 713 KETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 75/207 (36%), Gaps = 19/207 (9%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI 631
                +         ++ + +D +   +++         K  ++VVS  G     +  + 
Sbjct: 674 FHESAVREMGRTATGVRGITLDEDGQDEVIGMICIKDPLKETIMVVSENGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYKD-----GGISDVICFKICEG 708
           VRL   +      G +  V      EG
Sbjct: 794 VRLIDLEKRNDQIGSVCKVTSETEEEG 820


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 388/768 (50%), Gaps = 38/768 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 22  VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 82  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 142 TECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKI 201

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    +++PE     ++E LL  + GPDFPT G+IV  R  I ++YR GR
Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIV-GRAGIQDAYRTGR 260

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++A
Sbjct: 321 RTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVA 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     D  +  ++    +
Sbjct: 380 HQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLEI 439

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q   ++ E+ E+ 
Sbjct: 440 DEIQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDILAKPERQRRIVSEELGEIV 499

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
             +        RRT        D     + +I +E I V I+  G+         RS + 
Sbjct: 500 AKWGD-----DRRTQII---PFDGEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQRR 551

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +S    ++ D +       T D IL  +  G+ Y   A  L        G+ +  L
Sbjct: 552 GGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANL 611

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +    ++ I              L++ +  G        E  +N   G   + +  ++++
Sbjct: 612 LAFQPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDEL 671

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
                V     + +V +N   + F+     +  M R   GV    + +    +++  ++ 
Sbjct: 672 VGAALVAPEQDLLLVSKNALAIRFNATDEALRPMGRATSGVIGMRFSED--DELLAMEVV 729

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             GL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 730 RHGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 15/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++ +  +  P  V+ +  G ++  +    D +      A++ +E D L  A
Sbjct: 615 QPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTC 612
                   +LL+S +  A    A +  + R  G A   +I +    + +++   V     
Sbjct: 675 ALVAPEQDLLLVSKNALAIRFNATD-EALRPMGRATSGVIGMRFSEDDELLAMEVVRHGL 733

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 734 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNG 793

Query: 669 KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            ++   +  +     R   GV+L    DG     I     E
Sbjct: 794 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/769 (32%), Positives = 425/769 (55%), Gaps = 34/769 (4%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +  + T+  V  N++ V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM +
Sbjct: 1   MDENETMLTVAHNLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQ 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MG+     F+KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY  ++GQGNFG++DG
Sbjct: 61  MGMTPDKPFRKSARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEARM++++  +L+ ++++ VDF D ++  + EPVV PS+FP+LL NG+ GI
Sbjct: 121 DGAAAMRYTEARMSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +A ID+P+IS++ L+ +I GPDFPT G+I+  +  I E+Y
Sbjct: 181 AVGMATNIPPHNLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVIL-GKSGIREAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  ++R++  V+ + +G   IV++EIPY V K++LI+KIAEL+  KR+  + DIRD
Sbjct: 240 ETGRGRIKIRSKVAVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRD 299

Query: 304 ESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+  +    ++    R  +  +++  ++  + ++  + +    L  G+ P+V+ L  IL 
Sbjct: 300 ETDLKHGIRIVVELKRDTNATIVLNQLYKHTQLQDTYGVINLALVDGQ-PKVLSLKQILH 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VS 419
            ++AH++E++ RR+ F ++  + R  IL+G  IA  NIDE+I IIR     K      + 
Sbjct: 359 YYVAHQKEIIVRRTKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMD 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LT+ Q  AIL++RL+ L  LE  +I++E   L+ +  +  ++L   K     I  E+
Sbjct: 419 RFALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKLVLGIIKDEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+K+ +      G  R T  ++   D     + +I++E + V +++ G+++        
Sbjct: 479 TEIKDKY------GDDRRTSFDIDVEDFDV--EDLIKEEEVVVTMTHVGYVKRIAADTYR 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +SAL  +E D ++      T D +L  +  GK Y L A  +        G A
Sbjct: 531 AQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGTA 590

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  ++ L+ ++ I T      +++    ++ +  G       ++  ++ + G   + +  
Sbjct: 591 IVNILQLDPDESITTMIQVKTFEADKYFVMATRHGLIKKTAMTDYESSRKNGINGINLRD 650

Query: 647 EEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V         V+G +    + F +  +    R   GVR    +      V+   
Sbjct: 651 GDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNATGRMSMGVRGIGLRAD--DHVVGMD 708

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +       +  A + Y +  +     + KRGG G    K   ++G  + 
Sbjct: 709 LLIADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTKKTGNLVG 757



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 18/241 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +   +    +Q    E +   V+ +  G I+      
Sbjct: 575 KAYEIPVGGRTSRGTAIVNILQLDPDESITTMIQVKTFEADKYFVMATRHGLIKKTAMTD 634

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++ ++ ++GD L     +  T+ +++ +  G A      ++ +       ++
Sbjct: 635 YESSRKNGINGINLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNATGRMSMGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I L  +  +V   +  +   +L V+ KG        +     R GK          + 
Sbjct: 695 G-IGLRADDHVVGMDLLIADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTKKTG 753

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             +   V   G  + ++  +  ++    D I ++ R  +GVRL   K       IC    
Sbjct: 754 NLVGFSVLEDGGEIMMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQN 813

Query: 707 E 707
           E
Sbjct: 814 E 814


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 394/762 (51%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E +IE +L+ + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L     P+VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNE-PRVMNLLDMLNHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  +++ F LTE 
Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLIAAFDLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +++ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEIIVIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T       D     + +I +E + + ++  G+I+               
Sbjct: 485 ------GDERRTAIGFDEYD--ISMEDLIPREDVVITMTKLGYIKRMTVDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      T   ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 537 GIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I              L + + KG       ++     + G   + +  E+++  V
Sbjct: 597 MPEEKITAIIPIKEYVQGEYLFMATKKGLVKKTPITDYANVRKTGLAAITLREEDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
                +  + +V +  + + F+   +    R   GVR  +   G   +V+  ++  +G  
Sbjct: 657 KATDNEKDIILVTKYGQCIRFNEKDVRSTGRTSMGVRGMNL--GDRDEVVGMQLNTQGEH 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +           RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTEMSEFTSQNRGGKGVKCYKITEKTGNVVG 756



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +      +     + + +G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPIKEYVQGEYLFMATKKGLVKKTPITD 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           I+L++  G+       ++ S       ++
Sbjct: 634 YANVRKTGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVRSTGRTSMGVR 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + +L    ++V   +      LL+VS KG     E SE  +  R GK        EK  
Sbjct: 694 GM-NLGDRDEVVGMQLNTQGEHLLIVSEKGMGKRTEMSEFTSQNRGGKGVKCYKITEKTG 752

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            VV V      + + ++     ++    + I  + R   GV+L +  D      I 
Sbjct: 753 NVVGVKAVSEDNEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIA 808


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 416/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LIDN +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   IVVTEIPYQV KS+LIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WI 712
             G + + +V +N   + F+ + +  M R   GV+  + ++      +  ++  G    +
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLRED--DKAVSMEVVLGDEALL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 141/444 (31%), Gaps = 30/444 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIVNIIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L+A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLGDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVICFKICEGL 709
           GV+L    +      I     E +
Sbjct: 784 GVKLMRTSEEEKIVAIAKIKSEDI 807



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 23/221 (10%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-------------RADKATLQ 511
           + + ++    I  +  +  + F   T  G  + T                  R D   + 
Sbjct: 588 IENNEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELID 647

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
             M +     ++++  G+        +R +   +  +  +  +E D           + +
Sbjct: 648 VKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVVLGDEAL 707

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L +S +G             R  G+ +      +    IV A       +L++V+S   A
Sbjct: 708 LSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVA 767

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
             +  SEI   +R   G   ++ S EEK+  + K+  + + 
Sbjct: 768 IRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 408/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F  NM  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+  Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSVRQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  M R   GVR  + ++G    V    I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGD-QLVGATMISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 37/256 (14%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  +      +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIIN--------VTKDQEADSYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              D   +   +   +   ++ +  G+      
Sbjct: 614 ATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTE 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R++   +  +  ++ +EGD L  A        +L+L+  G     PA    +    G
Sbjct: 674 TDVRNMGRTATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + I+ L   + N  +           ++V++  G       + I    R   G   ++++
Sbjct: 734 KGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLN 793

Query: 646 SEEKMKLVVKVTGDHV 661
            E K+     V    +
Sbjct: 794 DEAKIMTFALVDAAEI 809


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 402/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A + +ID+      E +IE +L+ I GPDFPTGG+I+ +R  I E+YR GRG 
Sbjct: 187 NLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+V+E+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 VRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V     R  + ++++  ++  + ++  F + M  L     P+VM L  +L  +L H+ 
Sbjct: 306 MRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNE-PRVMNLLDMLNYYLEHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  D     K  ++ RF L++ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMERFGLSDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +  ++ ++L   K     I  EI  +++ +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAILADRKLLLGVIKEEIIIIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I ++ + + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEFDISMEDLIPRQDVVITMTKLGYIKRMSNDTFKAQHRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D ++     +T   I+  +  G+ Y L A  +   S    G AI  L+ L
Sbjct: 537 GIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEASRTSRGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y     L + + KG       ++     + G   + +  E+++  V
Sbjct: 597 MPEEKITAVIPIEEYKEGEYLFMSTKKGLVKKTPITDYANVRKTGLAAITLREEDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                +  + ++ +  + + F+   +    R   GVR  +  D    +VI  ++  +G  
Sbjct: 657 KYTNNERDIILITKYGQCIRFNERDVRSTGRTSMGVRGMNLAD--RDEVIGMQLDSQGTH 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +           RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITEKTGNVVG 756


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/824 (33%), Positives = 400/824 (48%), Gaps = 97/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG++DGDSAAA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNPEI ++ L+EYI GPDFPT GI +     I+  YR GRG  R+RA
Sbjct: 186 NLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGI-INGTAGIIAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLMNLKQMLEAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P                     
Sbjct: 364 RTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L    +    I  E+  VK  F      G  R T    S  D   L   +I  
Sbjct: 484 IAGLIHILEDPDRLLQVIREELISVKAEF------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++                 SA   KE D ++     +T D +L  ++ 
Sbjct: 536 EDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                E      +GK  + +   + +  V    G+  + +   N K + F  D++  M R
Sbjct: 656 KTPLGEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL--------------------------------- 709
              GVR      G   +V+   + E                                   
Sbjct: 716 TATGVRGIKMPAG--EEVVSLIVAESAGGSEDENEDDNGVEETAANGDAVIDGADDASVQ 773

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           RG  G +  +   R+GK +++
Sbjct: 774 YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 45/247 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ILL +++GK        + S       ++  I +   +++V+  V +S 
Sbjct: 682 VGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG-IKMPAGEEVVSLIVAESA 740

Query: 612 --------------------------------CKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                             +L  +  G        +     R  +
Sbjct: 741 GGSEDENEDDNGVEETAANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQ 800

Query: 640 TFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-K 693
             + + + E+    +  V+  +GD V ++ +   L+     +I  + R  +GV L    K
Sbjct: 801 GVIGIQTTERNGKLVAAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSK 860

Query: 694 DGGISDV 700
           D  +  V
Sbjct: 861 DEKLQAV 867


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 406/763 (53%), Gaps = 36/763 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E+G+++    KKS
Sbjct: 13  NIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAELGVNYNKPHKKS 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 73  ARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDGDSPAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A+ +L  + ++ VDF+  +++   EP V P+K PNLL NG+SGIAVGMAT++  HN
Sbjct: 133 LKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGIAVGMATNMAPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA ++N EI++E+L++++  PDFPTG   +   E +  +++ GRG   +RA 
Sbjct: 193 LTEVVDGILAYLENSEITVEELMQFVKAPDFPTGA-TIYGMEGVKSAFKTGRGRVVMRAH 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  RG   I+VT++PY V K+ ++EK AELI  K+I  +   RDES  D   V++ 
Sbjct: 252 ATIEE-NRGKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRDESDRDGLRVVYD 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P++++ +++  + +++ F +N   L  G  P ++ L  ++K ++ HR EV+ RR
Sbjct: 311 LRKDAIPNVVLNNLYKHTALQSSFSINNVALVKG-RPMMLNLKDMMKYYVEHRFEVITRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + ++  ++R  IL+GLLIA  NID +I +IR+   P   +  ++ RFSL++ Q  AIL
Sbjct: 370 TQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMERFSLSDLQAKAIL 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  ++++E D L+ E   +  +L S +++   I  E+ +++  +      
Sbjct: 430 EMRLQRLTGLERDKLQAEYDELMTEIADLKEILASEERKRQVIKEELTDIRARYGDE--- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT    +   D      ++I  E + + IS+ G+I+              V   A  
Sbjct: 487 --RRTEINPLG--DGNISDLSLIADEDMVITISHEGYIKRTPTTEYRSQGRGGVGAKAAS 542

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D  +    A   + +L  +  G+ Y LP   L   S    G  +   I++  +  +
Sbjct: 543 TKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYELPEGSRTSKGRPLANFINIESDDKV 602

Query: 603 VTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                        Y +   +++ + KG              + G   + +  ++++  V 
Sbjct: 603 RAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLEAYSRPRQNGIIAITIDEDDQLLGVC 662

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK--ICEGL 709
              GD  + +     K + F   ++  M R   GVR  S  +      VI       +  
Sbjct: 663 MTNGDNDIVIASSAGKAVRFHESRVRPMGRTAAGVRGISLDEEDPTDHVIGMVCISSQDA 722

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RG  G    K   + G+ ++
Sbjct: 723 QLLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITEKVGRLVA 765



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 22/250 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA-------TLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
              T  GR    F  +   DK         L+          V+ + +G I+     +  
Sbjct: 581 GSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLEAYS 640

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR--GHGEAI 590
                 + A+   E D L      +  + I++ S+ GKA       +   GR       I
Sbjct: 641 RPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPMGRTAAGVRGI 700

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            L  +   +  I    +     +LLVVS  G     +        R  K    +   EK+
Sbjct: 701 SLDEEDPTDHVIGMVCISSQDAQLLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITEKV 760

Query: 651 KLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
             +V V      D + ++ ++   +   +D I  + R  +GVRL    +G  IS V   K
Sbjct: 761 GRLVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSVTKIK 820

Query: 705 ICEGLTWIDS 714
             EG     +
Sbjct: 821 KEEGEEIATA 830


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/756 (32%), Positives = 396/756 (52%), Gaps = 41/756 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G      + K +R+VG+V+G 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVRLAQ +  RYPL+ G GNFG+   D  AA RYTEARM  +A  +L+
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+   SEP+V PS+FPNLL NG  GIAVGMAT+IP HN+ E+ +    
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 206 LIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
            +D+P+ +  +LLE     + GPDFPT G+IV  R  I ++YR GRG  R+RA   VEE 
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIV-GRNGIEDAYRTGRGSIRMRAVVNVEE- 238

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSL 320
            +G   +VVTE+PYQV    L EKIAEL+   +I  + D+RDE SA   + ++    R  
Sbjct: 239 NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDA 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
              +++ +++  + ++  F +NM  +  G VP+ + LD I+  ++ H+ EV+ RR+ +++
Sbjct: 299 VAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQIISYYVEHQIEVIVRRTRYQL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +    R+ +L GLLIA  ++DE+IA+IRN    D  +  ++ RFSL+E Q  AIL+++LR
Sbjct: 358 RKARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMERFSLSEIQATAILDMQLR 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I  E   L A+  +++++L S  +Q   I  E+ EV E +        RRT
Sbjct: 418 RLAALERQRIIDEAAELRAKVSELEAILASPARQREIIGQELAEVVEKYGDE-----RRT 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGD 549
                   +     + +I +E + V ++  G+         RS K     +     +E D
Sbjct: 473 RLV---PFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
            ++      T   +L  +  G+ Y   A  L        G+ +  ++  + ++ I     
Sbjct: 530 IVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMA 589

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              Y++   L++ + +G       ++  +N   G   + +  ++++     V  GD + +
Sbjct: 590 IQDYEAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLL 649

Query: 664 VGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI---SDVICFKICEGLTWIDSAGR 717
           V  N + + F  D   +  M R   GV    + D       DV+       L    S G 
Sbjct: 650 VSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDDSDELLSMDVVVPDTTADLLVATSGG- 708

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +        +  RGG G L  K     G  + +
Sbjct: 709 -YAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGA 743



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                  +     E  P  V+ + RG  +       D +      A++ ++ D L  A  
Sbjct: 581 DERIAEVMAIQDYEAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARL 640

Query: 557 AHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               D +LL+S + ++    A +      GR     I +  D +     +   V D+T  
Sbjct: 641 VAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDDSDELLSMDVVVPDTTAD 700

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRK 669
           LLV +S G A     +E     R GK  L           +  +V    D +  +  N  
Sbjct: 701 LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVAPDDQLYAITSNGG 760

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +L      +    R   GVRL   + G    V    +       DS G  
Sbjct: 761 VLRTVAKDVRRAQRQTMGVRLIDLEAG----VQVVGVARNADANDSDGSG 806


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 408/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F D Y+  + EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++DNPE++  +++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE G G   IVVTE PY V KS++ E I +L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F  + ++T F   M  +  G VP+++ +  IL+ ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNG-VPKILSVRQILESYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN +     +  ++ +F L+E Q 
Sbjct: 359 VTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           N+ I T        ++   L   + +G       SE     + G   L +  ++++  V 
Sbjct: 592 NEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  M R   GVR  + ++G    V    I +    +
Sbjct: 652 LTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRGINLREGD-QLVGATMISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + +           RGG G    K   ++G    
Sbjct: 711 VLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E              E +      + +G ++              L AL+ KE D L 
Sbjct: 589 LEENEAIQTIINVTKDQEADSYLFFATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G +      ++ +       ++  I+L     +V A +     
Sbjct: 649 NVFLTNGQADIIMGTKFGYSVRFTETDVRNMGRTATGVRG-INLREGDQLVGATMISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    +   +K   +  +  V+GD  + V+ +  
Sbjct: 708 EVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++    D   + ++ F + +     +   
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRLNDE--AKIMTFALVDAAEIKEEKE 814



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 37/256 (14%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  +      +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLEENEAIQTIIN--------VTKDQEADSYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              D   +   +   +   ++ +  G+      
Sbjct: 614 ATRQGVVKRTSVSEFANIRQSGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTE 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R++   +  +  ++ +EGD L  A        +L+L+  G     PA    +    G
Sbjct: 674 TDVRNMGRTATGVRGINLREGDQLVGATMISDDQEVLVLTEKGFGKRTPASEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + I+ L   + N  +           ++V++  G       + I    R   G   ++++
Sbjct: 734 KGIKTLKVADKNGSLAGLTTVSGDEDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLN 793

Query: 646 SEEKMKLVVKVTGDHV 661
            E K+     V    +
Sbjct: 794 DEAKIMTFALVDAAEI 809


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 409/759 (53%), Gaps = 33/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   QRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ V++   +++   EP V PS  PNLL NG SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +   ALIDNP+I IE+L++++I PDFPTGGI +   E +  +Y  GRG   +RA
Sbjct: 184 NLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGI-IYGYEGVRLAYTTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   IVVTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQFYIQHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I  IR     +  +  ++ RF L+E Q  A
Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    +A  E++  +L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASPERQMQIIRTELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +++G+ Y L    +        G ++  +++LN  +
Sbjct: 534 AQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAARGRSLANIMELNPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++ G        E     R G   + + + + +       
Sbjct: 594 TIKTYINIRNFDEPGFIMMATADGIVKKTALEEFSRPRRNGIAAITIDTGDALLDARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFKICEGLTWID 713
           GDH V +   +  ++ F   Q+  M R   GV+  +   G   IS V   ++   L  + 
Sbjct: 654 GDHQVILAKSSGLVVRFPESQVRPMGRTAMGVKGITLDRGEKCISMVTTKRLDTALLAVT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G  + +        L KRG  G +  K   + G  + 
Sbjct: 714 DNG--FGKRSKVEDYRLTKRGARGVITLKAHEKIGALVG 750



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 13/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            ++    ++ +  G ++              ++A+    GD+L  A       +++L  +
Sbjct: 604 FDEPGFIMMATADGIVKKTALEEFSRPRRNGIAAITIDTGDALLDARLTDGDHQVILAKS 663

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
            G     P   +         ++  I L+  +  ++          LL V+  G     +
Sbjct: 664 SGLVVRFPESQVRPMGRTAMGVKG-ITLDRGEKCISMVTTKRLDTALLAVTDNGFGKRSK 722

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R  +  + + + EK+  +V        D + ++  +  +    +  I    R
Sbjct: 723 VEDYRLTKRGARGVITLKAHEKIGALVGLLDVNDDDDLIIITSHGIVNRQHVSDIRITGR 782

Query: 684 GK-GVRLQSYKDGGISDVIC 702
              GVRL    +G     + 
Sbjct: 783 NTSGVRLVRLMEGDAVSALA 802


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/816 (32%), Positives = 413/816 (50%), Gaps = 88/816 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+ L +A  NIDEII +IRN   P                     
Sbjct: 364 RTIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ESAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +++  +L S ++    I  E+  V++ F        RRT   E++ A      + +I +
Sbjct: 484 IKELMHILASTERLMEVIREELEMVRDAFGD-----VRRT---EITAASHDIDLEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        + +   + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSADKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   + +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     +G   +     
Sbjct: 716 ENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGD-VLTVTEN 774

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G  + +
Sbjct: 775 GYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGA 810



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 75/250 (30%), Gaps = 42/250 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L       +    + +  G ++              L A++ ++ DSL   
Sbjct: 625 EENERITAILPVTEFSADKFIFMATGDGTVKKTSLDQFSNVRANGLIAVNLRDEDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                   I+L S  GK                                  R  G     
Sbjct: 685 DITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPVLDENGQPEIKFKGVRPMGRTAAG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 745 VRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN 804

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-------GIS 698
              +  V    GD   ++ +   L+   + ++ ++ R  +GV L    +         I 
Sbjct: 805 GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 864

Query: 699 DVICFKICEG 708
           +V    + EG
Sbjct: 865 EVEETDLPEG 874


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/761 (32%), Positives = 415/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + VV +N   + F+ + +  M R   GV+  + +       +   +  E  T +
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLR--KTDKAVSMDVVIEDETLL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 26/435 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         D I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L      V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKA-ITLRKTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVIC 702
           +L    +      I 
Sbjct: 786 KLMRTSEEEKIVAIA 800


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/756 (33%), Positives = 407/756 (53%), Gaps = 29/756 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   + + YL Y++S I  RA+PD+RDG KPVHRR++  M+E+GL  G ++KK
Sbjct: 4   EKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDS+VR+ Q F  RYPL+ GQGNFG++DGD+ AA RYTE 
Sbjct: 64  SARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  IL+ +D++ +DF   +++   EP+V P+ FPNLL NG SGIAVGMAT+IP H
Sbjct: 124 RMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+NPEI+IE+L+ YI  PDFPT GI +     + ++Y  GRG   +RA
Sbjct: 184 NLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGI-IYGYNGVRDAYLTGRGKIVLRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  VE     G   I++TE+PYQV K+RLIEKIA L+  K++  + D+RDES  D   V+
Sbjct: 243 KVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +     +++  +F L+ ++  F + M  L  G +P+V+ L   ++ ++ HR EV+ 
Sbjct: 303 IELKKDAVTQVVINRLFKLTQLQETFGVIMLALV-GGIPRVLTLKETIQYYVNHRHEVIL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +   +RR  IL+GL I   N+DEIIA IR     +  +  +++ FSL++ Q  A
Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMATFSLSDLQAKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   LL   E + ++L + K Q   I  E+ ++K+ +    
Sbjct: 422 ILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAILANEKLQMQLIKKELLQIKKTY---- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSA 542
             G  R T       D +   + MI +E + + I+++G+I+                +S 
Sbjct: 478 --GDERRTQIVYETEDFSV--EDMIAEEDVVITITHQGYIKRFPVSGYRRQGRGGRGISG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  +E D ++    A T   IL  ++ GK Y L    +        G +I  LI+    +
Sbjct: 534 VSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAGRTARGRSITNLIEFATGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    ++ T  +++ +  G       SE     R G   + ++  +++       
Sbjct: 594 KIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGASLTD 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G H  V+ +N    + F    +  M R   GV+  S         +        T +   
Sbjct: 654 GSHQIVLAKNTGYAVRFPEQNVRPMGRNSIGVKGASISGDEAIISMVSTPRNDATLLAIT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              Y +        + KRG  G +  K   + GK +
Sbjct: 714 DNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLV 749



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 15/227 (6%)

Query: 490 TDLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLS 541
           T  GR  T   E +     KA++           V+ +  G I+              + 
Sbjct: 577 TARGRSITNLIEFATGEKIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGII 636

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           A++  + D L  A     + +I+L    G A   P  N+     +   ++    ++ ++ 
Sbjct: 637 AINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPMGRNSIGVKGA-SISGDEA 695

Query: 602 IVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---- 656
           I++      +   LL ++  G        +     R     + + + EK+  +V +    
Sbjct: 696 IISMVSTPRNDATLLAITDNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDMLEVN 755

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            G+ + ++     +    I  I  M R   GVRL    +      + 
Sbjct: 756 DGEDIIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVA 802


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/752 (37%), Positives = 448/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P  S+E+LLE++ GPD+PT   I+  RE I + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWSKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA
Sbjct: 297 NPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ 
Sbjct: 357 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE++I+ E D L  E++++ +LL S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEFKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  +   +  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPITERAE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    T   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G+   +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDVICFKI--CEGLTWIDSAGRS 718
               ++L F +  +P++S+GKG ++ S        G   +    +   +    +    R 
Sbjct: 651 TAAGRMLFFPVADLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSVTLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGTSLPRGLQRIDRV 742


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/768 (30%), Positives = 388/768 (50%), Gaps = 38/768 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      
Sbjct: 22  VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY
Sbjct: 82  YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRY 141

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIAVGMAT I
Sbjct: 142 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKI 201

Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++EI  A    +++PE     ++E LL  + GPDFPT G+IV  +  I ++YR GR
Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIV-GQAGIQDAYRTGR 260

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + DIRDES+ 
Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIREGKLGGIADIRDESSG 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R     +++ +++  + ++  F  NM  L  G VP+ + L   ++ ++ 
Sbjct: 321 RTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRSYVE 379

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     D  +  ++    +
Sbjct: 380 HQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLDI 439

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+++LR L  LE  +I  +L  L  E      +L   ++Q   ++ E+ E+ 
Sbjct: 440 DEIQATAILDMQLRRLAALERQRILDDLVKLELEIADFKDILAKPERQRRIVSEELGEIV 499

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
             +        RRT        D     + +I +E + V I+  G+         RS + 
Sbjct: 500 AKWGD-----DRRTQII---PFDGEVSMEDLIAREDVVVTITRTGYAKRTKVDAYRSQRR 551

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +S    ++ D +       T D IL  +  G+ Y   A  L        G+ +  L
Sbjct: 552 GGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANL 611

Query: 594 IDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +    ++ I              L++ +  G     +  E  +N   G   + +  ++++
Sbjct: 612 LAFQPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDEL 671

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
                V     + +V +N   + F+     +  M R   GV    + +    +++  ++ 
Sbjct: 672 VGAALVAPEQDLLLVSKNALAIRFNASDEALRPMGRATSGVIGMRFSED--DELLAMEVV 729

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             GL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 730 RHGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 777



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 15/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++ +  +  P  V+ +  G ++  K    D +      A++ +E D L  A
Sbjct: 615 QPDEQIAQIIEISDYQVAPYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDELVGA 674

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTC 612
                   +LL+S +  A    A +  + R  G A   +I +    + +++   V     
Sbjct: 675 ALVAPEQDLLLVSKNALAIRFNASD-EALRPMGRATSGVIGMRFSEDDELLAMEVVRHGL 733

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 734 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNG 793

Query: 669 KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
            ++   +  +     R   GV+L    DG     I     E
Sbjct: 794 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 834


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/760 (33%), Positives = 411/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++N  +V++   + + Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G ++   
Sbjct: 2   LSQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM +++  +L  ++++ VDF   Y++  SEP+V P KFPNLL NG+ GIAVGMAT I
Sbjct: 122 TEVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    +++ID+P ++ E L++ I GPDFPT G I+   E + E+YR GRG  +
Sbjct: 182 PPHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFIL-GHEDVQEAYRTGRGIIQ 240

Query: 252 VRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RA+  VE +       IV+ EIPYQV K++LIEKIA LI  K+I  + D+RDES  D  
Sbjct: 241 MRAKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++  ++ ++ M++ F + M  +  G  P+++ L  +L +++ HR+E
Sbjct: 301 RIVIDLKREAVAGVVLNQLYKMTAMQSSFGIIMLAIV-GGQPKILTLREVLDQFIDHRKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           ++ RR  F ++  + R  IL+GL IA  N+DE+I II+   N  + K  ++ RF+ ++ Q
Sbjct: 360 IVTRRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIERFTFSDIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  LE  +I +E + +LA+  ++  +L S  +    I  E+ EVKE + 
Sbjct: 420 AQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSEVEILKIIRAELIEVKENYD 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+    K    + +I +E + V +S+ G+I+          +     
Sbjct: 480 DP-----RRT---EIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKRNAVSLYRSQRRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
            + +  KE D ++    A T   IL+ +  GK Y L    +  G     G+AI  L+ L 
Sbjct: 532 KTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAARGKAIVNLLQLA 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + ++T      +     ++  +  G     E        + G   + +   + +    
Sbjct: 592 PEERVMTILPVKEFVEDKYIIAATKNGVVKKTELMAYANPRQGGIISMTIDEGDSLVATR 651

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTW 711
              G   V +   + K + F+   +  M R  +GVR    + D  I  +         + 
Sbjct: 652 ITDGSMDVLLASHHGKSIRFAETDVRPMGRTARGVRGMQLEGDDTIIGMEVVNDNTSASL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +      Y +  N     +  R G G +  K   R+G  +
Sbjct: 712 VSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRNGYVV 751



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 72/214 (33%), Gaps = 14/214 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIAL 555
                   L      ++   +  +  G ++              + ++   EGDSL    
Sbjct: 592 PEERVMTILPVKEFVEDKYIIAATKNGVVKKTELMAYANPRQGGIISMTIDEGDSLVATR 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CK 613
               +  +LL S  GK+      ++         ++ +  L  +  I+   V +      
Sbjct: 652 ITDGSMDVLLASHHGKSIRFAETDVRPMGRTARGVRGM-QLEGDDTIIGMEVVNDNTSAS 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRK 669
           L+ V+  G       SE    +R GK  + + + ++   VV        + +  + +  K
Sbjct: 711 LVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRNGYVVDIKLVTDEEDLMFITDRGK 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +L   +  +  + R  +GVRL   +D      + 
Sbjct: 771 ILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVA 804


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 412/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +S++G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GESIQTVINAKSDEGSDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              TG+   ++G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 77/210 (36%), Gaps = 14/210 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                    V ++ +G ++  K           L AL  +EGD L         + I++ 
Sbjct: 604 DEGSDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+V+ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIVTEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           R   GV++    D   + ++ F + E    
Sbjct: 783 RATQGVKVMRLDD--TARIVTFALVEPEEV 810



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            ++ +  G+        IRS+   +  +  +  ++GD +  A        +L+++  G  
Sbjct: 660 IIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIVTEKGYG 719

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
               A    +    G+ I+     + N ++           ++V++  G       + I 
Sbjct: 720 KRTSATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANIS 779

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
              R   G   +++    ++     V  + V  V E+
Sbjct: 780 QTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTED 816


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/756 (33%), Positives = 407/756 (53%), Gaps = 29/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LID+PE ++E+L+E I GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLIL-GTEGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES  +   ++   
Sbjct: 245 HIEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L    R P+V+ L  +L+E++ HR+EV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +I  IR+    +  +  ++  FSLTE Q  AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRNFSLTERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +      
Sbjct: 425 ELQLRRLAALERQKIEEEYREVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              + +I    + + +++RG+I+          +     +  + 
Sbjct: 482 --RRTRII--PDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGML 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++  L  ++ D +L  +  GK Y + A  +   S    G  +  L+ L   + +
Sbjct: 538 TREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQV 597

Query: 603 VTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            +           L++ + +G     +  E       G   + +   + +  V    G +
Sbjct: 598 TSMLAVREFDAEYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHE 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGR 717
            + +     + L F   ++  M R   GV   +  +G    V+   +  EG   +    R
Sbjct: 658 DILLTTARGQTLRFEQSEVRPMGRPATGVIGINLAEG--DRVVSMDLAEEGADLLVVTAR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +        L  R   G +  K    + +  ++
Sbjct: 716 GIGKRTALSEYPLKGRATGGVITIKLRNETDEVAAA 751



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 16/204 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V+ + RG I+  +           L A+  +EGD L     +H  + ILL +  G
Sbjct: 607 DAEYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTTARG 666

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +        +   R  G     +I  +L     +V+  + +    LLVV+++G       
Sbjct: 667 QTLRFEQSEV---RPMGRPATGVIGINLAEGDRVVSMDLAEEGADLLVVTARGIGKRTAL 723

Query: 629 SEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRG 684
           SE     R   G   +K+ +E        V  +H  +  +     ++  S  +I  + R 
Sbjct: 724 SEYPLKGRATGGVITIKLRNETDEVAAAAVVREHSLLTFITTGGMVMRTSASEISRLGRA 783

Query: 685 K-GVRLQSYKDGGISDVICFKICE 707
             GV + +   G     +  +  +
Sbjct: 784 TQGVTVVNVASGDRVAALSVEDPD 807



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGE 588
           +R +   +  +  ++  EGD +     A     +L+++  G             GR  G 
Sbjct: 676 VRPMGRPATGVIGINLAEGDRVVSMDLAEEGADLLVVTARGIGKRTALSEYPLKGRATGG 735

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            I + +    ++ +  A V      L  +++ G       SEI    R   G T + V+S
Sbjct: 736 VITIKLRNETDE-VAAAAVVREHSLLTFITTGGMVMRTSASEISRLGRATQGVTVVNVAS 794

Query: 647 EEKMKLVVKVTGDH 660
            +++  +     D 
Sbjct: 795 GDRVAALSVEDPDE 808


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/788 (33%), Positives = 404/788 (51%), Gaps = 60/788 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L + N  AV++   ++  Y+ YA+S I  RA+PD+RDG KPVHRR ++AM +MG D+   
Sbjct: 2   LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM Q+A  +L  +D++ V+    Y++   EP+V P+KFPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEIRMYQLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NPE++ E+L+  I GPDFPT G  +  RE I+ +Y  GRG  +
Sbjct: 182 PPHNLAEVIDGIVAVIHNPELTFEELIALIPGPDFPTAG-FIYGREGILSAYSTGRGIIQ 240

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  VE   +     IVVTEIPYQV K+RL+EKIAEL+  K+I  + D+RDES  +  
Sbjct: 241 MRARAIVETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    +  +P +++  ++  + M++ F + M  +     P+V+ L   +  ++ HRRE
Sbjct: 301 RVVVELKKDENPQIVLNHLYKQTQMQSSFGIIMLAIVNN-RPKVLTLRETINHFIDHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------- 422
           ++ RR+ F ++  + R  IL+GL IA   +D +I +IR    P        S        
Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEW 419

Query: 423 --------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                               L+E Q  AIL +RL  L  +E  +I  E   +L    ++ 
Sbjct: 420 LKKLGLSLPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLK 479

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S  +    I  E+ E+KE F        RRT   E+         +  I +E + V
Sbjct: 480 EILASETEILKIIVGELLELKEKFGDK-----RRT---EIIDQTAEISLEDTIVEEDMVV 531

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            IS+ G+I+          +      + +  KE D ++    A + D ++  +  GK Y 
Sbjct: 532 TISHTGYIKRNAVTMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYW 591

Query: 575 LPAGNLLS-GRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +   GR   G+AI  L++L+ N+ I        + +   +++ +  G        
Sbjct: 592 LKVYEIPEAGRATRGKAIVNLLNLSANEKITAILPVKEFAADKFIMMATRHGVVKKTPLM 651

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           E       G   + +   +K+  V    G   V +   N K + F    +  + R  +GV
Sbjct: 652 EYSHPRLGGIIAVNLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTVGRVSRGV 711

Query: 688 RLQSYKDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           R  + +D  +  VI  +I        T        + +           RGG G +  K 
Sbjct: 712 RGMTLEDDDV--VIGMEIINEEYTDSTLFTVTENGFGKRTELGEYRCQSRGGKGIITIKT 769

Query: 744 FPRSGKFL 751
             R+G  +
Sbjct: 770 TERNGCVV 777



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 16/241 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
            +    A L       +   ++ +  G ++              + A++  EGD L    
Sbjct: 617 ANEKITAILPVKEFAADKFIMMATRHGVVKKTPLMEYSHPRLGGIIAVNLDEGDKLISVA 676

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TC 612
                  +LL S +GK+      ++ +       ++ +  L  +  ++   + +      
Sbjct: 677 LTDGRQDVLLASRNGKSIRFKESDVRTVGRVSRGVRGM-TLEDDDVVIGMEIINEEYTDS 735

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENR 668
            L  V+  G     E  E    +R GK  + + + E+   VV     V  + + ++ +  
Sbjct: 736 TLFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERNGCVVDIKQVVDENDLMLITDQG 795

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQ-SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           K+L   ++    + R  +GVRL  +  D  +  V      E     +S     +    + 
Sbjct: 796 KILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTDGGLDTEVEEQ 855

Query: 727 L 727
            
Sbjct: 856 E 856


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/811 (32%), Positives = 418/811 (51%), Gaps = 83/811 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KK
Sbjct: 6   KEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF   Y+  +  P V P++ P LL NG++GIAVGMAT+IP H
Sbjct: 126 RMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  LA+IDN +I+I++L+++I GPDFPTG   +  R  I+E+Y+ GRG   +RA
Sbjct: 186 NLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGA-FINGRAGIIEAYKTGRGRIYMRA 244

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   E++ +G    IV TEIPYQ+ K+++IEKIAEL+  K++  + ++RDES +D   ++
Sbjct: 245 RHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ +IF  + +++ F +NM  L  G  PQ++ +  IL+ ++ HRREV+ 
Sbjct: 305 IELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDG-RPQLLNIKQILECFVKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS-------- 422
           RR+ F ++    R  IL+GL ++  NID +I +IR      + K  +VS           
Sbjct: 364 RRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVAM 423

Query: 423 --------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     L+ +Q  AIL+LRL  L  LE  ++  E   L+ 
Sbjct: 424 LERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLIE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++ ++L++  +    I  E++EVKE F  +     RRT   E+  + +      +I+
Sbjct: 484 LIGELLNILSNPDRLMEVIREELQEVKETFGDA-----RRT---EILTSRQDLTIADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           + P+ V ISN G+ +S         +      S+   K+ D ++  L   + D I+L S 
Sbjct: 536 EAPMVVTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF-------------------- 606
            GK Y L    +   S    G  I  L+ L   + I                        
Sbjct: 596 FGKVYWLRVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSD 655

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
             + +++  + + ++ G                G   L +   +++  V    G+  + +
Sbjct: 656 DAIVEASSYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIML 715

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           V  + K + F    +  M R   GVR     +     V      +G   + +    Y + 
Sbjct: 716 VSSSGKTIRFKESDVRAMGRTAAGVRGIRLGEDA-KVVSLIVPQDGSAVLMACENGYGKR 774

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  +  RGG G +  +   R+G  + +
Sbjct: 775 TLVEDFPVYGRGGQGVIGIQVSERNGPVVGA 805



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 16/206 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALH 556
           S AD      A++E      + +  G ++        +  S  L AL   E D L     
Sbjct: 647 SEADDDVSDDAIVEASSYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSV 706

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKL 614
            +  + I+L+S+ GK       ++   R  G     +  I L  +  +V+  V      +
Sbjct: 707 TNGENDIMLVSSSGKTIRFKESDV---RAMGRTAAGVRGIRLGEDAKVVSLIVPQDGSAV 763

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L+    G        +     R G+  + +     +   +        D + ++ +   L
Sbjct: 764 LMACENGYGKRTLVEDFPVYGRGGQGVIGIQVSERNGPVVGAAQVDETDEIILITDQGTL 823

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++    R  +GV L    + 
Sbjct: 824 VRTRVTEVSCQGRNTQGVTLIRLTND 849


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/753 (31%), Positives = 401/753 (53%), Gaps = 37/753 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G     A+KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEAR+ ++ E ++Q
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            IDN +I IE L++Y+  PDFPTGG  +     + ++Y  GRG   +RA+  +E      
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGG-YIYGISGVRDAYETGRGRVVMRAKAEIETHTT-H 238

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   ++    R  +  ++
Sbjct: 239 DKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVV 298

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F ++ ++T F +N   L     P+++ L  +++ ++ HR +V+ RR+ + ++    
Sbjct: 299 LNKLFKMTALQTSFGVNNIALV-HGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQE 357

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+IA  NIDE+I IIR    P   +   + RF+L+E Q  AI+ +RLR L  L
Sbjct: 358 RAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQARAIVEMRLRQLTGL 417

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
            + Q+ +E + ++ +    + +L++ +     I  E+ EVKE +  +     RR+   E+
Sbjct: 418 MQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDA-----RRS---EI 469

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
             + +    +     + + + IS+ G+I+              V       ++ D ++  
Sbjct: 470 VYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEHI 529

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF------ 606
             A   + ++  +  GK Y L    +  G     G AIQ L++++ +  +          
Sbjct: 530 YPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSDDVVTAYLRVKNLN 589

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
              + ++  +L  +  G        +     + G   + +  ++K+  V    GD  + +
Sbjct: 590 DTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIII 649

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICEGLTWIDSAGRSY 719
              N + + F    +  M R   GVR  +  + G  +V   IC K  E  + +  + + Y
Sbjct: 650 ANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGY 709

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG G        ++GK ++
Sbjct: 710 GKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 742



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 16/206 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 599 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIR 658

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ I    + D   + ++VVS +G     +  + 
Sbjct: 659 FHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQGYGKRSDIEDY 718

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   + ++  M R   G
Sbjct: 719 RKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVRIMGRATQG 778

Query: 687 VRLQSY--KDGGISDVICFKICEGLT 710
           VRL +   ++  I  V      E +T
Sbjct: 779 VRLINLEKRNDQIGSVCKVTSEEEVT 804


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 399/765 (52%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  
Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIAEL   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+T F +NM  +  G  P+ + L  +L+ +L
Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGA-PKFLTLKQMLQYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           AH+ +V+ RR+ F ++  + R  IL+GL +A  +IDEI+++IRN    D  K  ++SRF 
Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E   LL +      +L   ++    I  E+ ++
Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S        + +IE++   + +S++G+++           
Sbjct: 479 QKRF------GDKRRTQITASEV-VTIEDEDLIEEQDALLTLSHQGYVKRMLIDDFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  L++ T D +   +  GK Y   A  +        G  I  
Sbjct: 532 RGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I T               ++  G     +  E       G   L +   ++
Sbjct: 592 LLQLDKGEHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDE 651

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G   + +       + F+ D +  M R   GVR  + ++G    V    +  
Sbjct: 652 LSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMGRSAAGVRGINLREGDYV-VGSGILKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G    K   ++G    
Sbjct: 711 EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAG 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +  +       +     I+  G ++  K           L AL  K+GD L   L  
Sbjct: 599 EHIQTVVNLPQGHDDDYAFFITKLGTVKRTKIREFENIRTNGLIALTLKDGDELSNVLTT 658

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
                IL+ +  G A T    ++   R  G +   +  I+L     +V + +     ++L
Sbjct: 659 DGQQNILIATHQGYAVTFNEDDV---RAMGRSAAGVRGINLREGDYVVGSGILKPEDEVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
            +S KG       SE     R GK        EK   +  V  V G   + ++  +  ++
Sbjct: 716 TISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKNGPLAGVAVVDGQSDIMLITTDGIMI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            F    + +  R   GVRL    DG     +     E
Sbjct: 776 RFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAE 812


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/766 (33%), Positives = 430/766 (56%), Gaps = 32/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++    E  V  V +   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++AM+ +G
Sbjct: 1   MSDNTNNEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKS  +VGEV+GK HPHGD +VYD++VR+AQ F  R  L+ G GNFG+IDGD 
Sbjct: 61  LTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +L  ++++ VDF   ++E   EPVV PS+FPNLL NG+ GIAV
Sbjct: 121 AAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +A IDNP I+ ++L+ YI GPDFPTGG+IV  ++ I E+Y  
Sbjct: 181 GMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIV-GKDGIRETYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE   G   IVVTE+PY V KS+L+EKIAEL+  K I  + D+RDES
Sbjct: 240 GRGKIIVRAKAEIEE-HNGRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R ++P +++  ++M + M+  F   M  L  G  P+++ L+ I+++++
Sbjct: 299 DRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGA-PKILSLNQIIEKYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ +V+ RR+ F +Q  + R  IL+GL IA  +IDE+I +IR+       K  ++ +F 
Sbjct: 358 DHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+++RL  L  LE  +I+ EL++L  + +++ S+L+  K+  + I  E+++V
Sbjct: 418 LSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSILSDEKKVLDIIKKELKDV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K+ +S       RRT        +     + +++ E   V +++ G+I+          K
Sbjct: 478 KDKYSSG-----RRTHIV---AKEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKAQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +S +  +E D ++      T DR+L  +  GK Y+L   ++     +  G AI  
Sbjct: 530 RGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIIN 589

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI ++ ++ +          +   +++ +  G     E  +     + G T +K+   ++
Sbjct: 590 LIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLDDGDE 649

Query: 650 MKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G+   ++G  N   + F  D +  M R  +GV   + +D     V+   + +
Sbjct: 650 LINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDY--VVEMDLVD 707

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +      Y +  +        R G G +  K   ++GK +S
Sbjct: 708 RDKDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITKKTGKLVS 753



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 12/210 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +      A +           V+ +  G I+  +            +A+   +GD L
Sbjct: 591 IQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLDDGDEL 650

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              +       I++ + +G        NL         + + + L  +  +V   + D  
Sbjct: 651 INVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGV-IAVTLRDDDYVVEMDLVDRD 709

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGEN 667
             +LVV+  G     + +E  + TR GK  +         K+  ++ V+  D + ++  N
Sbjct: 710 KDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITKKTGKLVSIMSVSEKDELMIISAN 769

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             L+   I  I +M R   GV L    +G 
Sbjct: 770 GILIRTKIADISKMHRDTTGVMLMKLDEGD 799



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  + A+  ++ D +           IL+++ +G      A    S    G+ 
Sbjct: 679 LRPMGRQARGVIAVTLRDDDYVVEMDLVDRDKDILVVTENGYGKRSDANEYRSQTRAGKG 738

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           I           +V+        +L+++S+ G     + ++I    R   G   +K+   
Sbjct: 739 IIAAKITKKTGKLVSIMSVSEKDELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEG 798

Query: 648 EKMKLVVKVTGDH 660
           +++    ++  D 
Sbjct: 799 DRVVSTARIANDE 811


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 397/763 (52%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D V+F   ++E + EPVV PS++PNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E ++E+L+E + GPDFPTG  I+  R +I ++YR GR  
Sbjct: 187 NLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATIL-GRRAIEQAYRTGRSK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+V+E+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L   + P+V+ L  +L  +L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQ-PKVLNLHQMLDYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  +IDE+I+IIR      + K ++  RF L++ 
Sbjct: 365 DVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L A   ++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIENEYKELQARISELKAILADEKKLLTVIKDEITVIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        D     + +I  E   + +++ G+I+               
Sbjct: 485 GD-----DRRTAI----GYDDDMSMEDLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAGRTARGTAIVNLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L + +  G        E     + G   + +   +++  V
Sbjct: 596 QPEEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCEYENVRKNGLQAIVLRENDELIEV 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
                 + + ++ +N   + F    +    R   GV    ++DG   +VI  ++  +G +
Sbjct: 656 KATDNQEDIFLITKNGMCIRFHETDVRVTGRVSMGVIGMRFEDG--DEVIGMQMASQGDS 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G +  K   ++G  + +
Sbjct: 714 LLVVSENGMGKRTVINEFSAQNRGGKGVICYKITEKTGCLIGA 756



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 78/250 (31%), Gaps = 22/250 (8%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      A +      ++    + +  G ++      
Sbjct: 573 KAYEIPEAGRTARGTAIVNLLQLQPEEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCE 632

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +E D L         + I L++ +G        ++   R  G    
Sbjct: 633 YENVRKNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDV---RVTGRVSM 689

Query: 592 LLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE 647
            +I +      +++   +      LLVVS  G       +E  A  R GK  +  K++ +
Sbjct: 690 GVIGMRFEDGDEVIGMQMASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVICYKITEK 749

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
               +  K+  D   + ++     ++   +D I  + R   GV+L +        V    
Sbjct: 750 TGCLIGAKLVDDGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASIA 809

Query: 705 ICEGLTWIDS 714
                   DS
Sbjct: 810 KVRESVTKDS 819


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/766 (32%), Positives = 412/766 (53%), Gaps = 31/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      EE  ++  L   + + +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G
Sbjct: 1   MSEEVKHFEETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  RYPLI G GNFG++DGD 
Sbjct: 61  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D ++FRD Y+  + EP V P++ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A   L+ NP+++  +L+E + GPDFPTGGI++  +  I  +Y  
Sbjct: 181 GMATNIPPHNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVL-GKSGIRRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR R  +EE+  G   I++TE+PY V K+RL+E+IA+L   K+I  +  + DES
Sbjct: 240 GRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R +   +++ +++ L+ +++ F  NM  +     P+V+ L  IL+ +L
Sbjct: 300 DRVGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQE-PKVLSLKEILRHYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RRS F  +  + R  IL+GL IA  +ID I+AI+R+    D  K   ++ + 
Sbjct: 359 DHQEEVVRRRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++R+  L  LE  +I +E + L A  + ++ +L S + ++  I  E+ E+
Sbjct: 419 LSDKQAQAILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLASEELRYEIIEQELLEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F        RRT          +   + +IE+E + + ++  G+I+          +
Sbjct: 479 QQRFDNP-----RRTELLVGE--ALSLEDEDLIEQEDVVITLTKNGYIKRLANTEFKAQR 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D ++  +   T D +L  +  GK Y      +   S    G  +  
Sbjct: 532 RGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVIN 591

Query: 593 LIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++++  + I               L   + +G    V  SE       G   +++  ++
Sbjct: 592 LLNIDSAEKIQAIISVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDD 651

Query: 649 KMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI- 705
           ++  VV  +G+   ++G  +   + F  D++  M R   GVR  S +DG    VI   I 
Sbjct: 652 ELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDGDY--VIGMDIL 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 +  + + Y +        L  RGG G    +   ++G  +
Sbjct: 710 TPDNEVLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLV 755



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
                +           E E      + RG ++ ++           L A+  +E D L 
Sbjct: 595 IDSAEKIQAIISVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDDELI 654

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +     D I+L +  G A +     +   R  G     +  + L     ++   +   
Sbjct: 655 RVVVTSGNDGIILGTYHGNAVSFHEDKV---RAMGRTASGVRGVSLRDGDYVIGMDILTP 711

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVV-GE 666
             ++LVVS KG       SE     R GK    +   EK   +  +  VTGD   ++   
Sbjct: 712 DNEVLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLVCLRTVTGDEDLLIMTN 771

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
              ++ F  + + +  RG  GVR+       I   +    
Sbjct: 772 KGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSLAIVD 811


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/748 (35%), Positives = 403/748 (53%), Gaps = 31/748 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++   +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L S  +Q   I  E+ ++K+ +        RR+   E+
Sbjct: 419 EREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP-----RRS---EI 470

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIA 554
           +        + +I  E + + ++ +G+I+        +       +  +  KE D +   
Sbjct: 471 TIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
           +H  T + +L  ++ G+AY L A  +    S    G A+  ++ L   + + T    +  
Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN- 667
                L +V+  G        E     R G   + +   +++  V   TG+   ++G   
Sbjct: 591 HEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKL 650

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS--DVICFKICEGLTWIDSAGRSYNRSEN 724
              + FS   +  M R   GVR      G +     +             +   + +  +
Sbjct: 651 GIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRND 710

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L KRGG GS   K   ++G  ++
Sbjct: 711 AEAYTLQKRGGKGSKNFKITNKTGDVVA 738



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 18/233 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 574 PLAVGESVTTMIDLERVHEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 629

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           IL+ +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 630 DRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRG-IKLNAGDVVVGAGVL 688

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
              +S  ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 689 NTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEV 748

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICFKICEGLTW 711
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G    V    +  G   
Sbjct: 749 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEG--DKVASIAVIPGAEI 798


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 399/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISI-----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN  +       E+LL  + GPDFPTG +I+     I E+YR GRG 
Sbjct: 187 NLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMIL-GTTGINEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+RDES    
Sbjct: 246 IRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + M+  F + M  L   + P+V+ L  +L  +L H++
Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQ-PKVLNLQEMLGYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++ RFSLT+ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIERFSLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+    ++ ++L   K+    I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAILADEKKLLGVIREEILLIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I      + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEYDISMEDLIPVTNTVIAMTKLGYIKRMSLDNFRAQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  L   +   ++  +  G+ Y + A  +        G AI  L+ L
Sbjct: 537 GIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y     L + +  G       ++     + G   + +  ++++  V
Sbjct: 597 QPGEKITAVIPIKEYTEGHYLFMATKNGIVKKTPITDYANVRKTGLAAITLREDDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
            K   +  + +V +  + + F+   +    R   GV   +  DG    V+  ++  +G  
Sbjct: 657 KKTDNEQDIFLVTKYGQCIRFNERDVRSTGRTSMGVIGMNLTDG--DKVVGMQMESQGDA 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +           RGG G    K   ++G  + 
Sbjct: 715 LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITEKTGNIVG 756



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 19/250 (7%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            + +         R T        +      A +      +     + +  G ++     
Sbjct: 573 MKAYEIPEAGRTARGTAIINLLQLQPGEKITAVIPIKEYTEGHYLFMATKNGIVKKTPIT 632

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L+A+  +E D L           I L++  G+       ++ S       +
Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRSTGRTSMGV 692

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + +L     +V   +      L++VS KG       SE  A  R GK        EK 
Sbjct: 693 IGM-NLTDGDKVVGMQMESQGDALMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITEKT 751

Query: 651 KLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
             +V V      D + ++     ++   +     + R   GV+L +  D      I  K+
Sbjct: 752 GNIVGVKAVNQDDEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIA-KV 810

Query: 706 CEGLTWIDSA 715
            E  + +++ 
Sbjct: 811 REDKSLMENT 820


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/770 (32%), Positives = 407/770 (52%), Gaps = 35/770 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGL 66
             N  +E  +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++ MS E+ L
Sbjct: 20  EKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRILYDMSAELNL 79

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                 +KSARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPL+ GQGNFG++DGDS 
Sbjct: 80  YSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGNFGSMDGDSP 139

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM ++ + ++  +D+D +D+   +++   EP V P+K P LL NG SGIAVG
Sbjct: 140 AAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLVNGASGIAVG 199

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+ +A  A +DNPEI+ E+LL+Y+ GPDFPTGGI +   E + E+   G
Sbjct: 200 MATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGI-IYGYEGVREALLTG 258

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RAR  +E    G  CIV+TEIPY V K+ +I+KIA+LI  K+I  +  I DES 
Sbjct: 259 RGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGISYINDESD 318

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++          +++ +++  + ++T F +N   L  G  P ++ L  +++ ++ 
Sbjct: 319 RNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNG-RPMMLNLLDLVQHFVE 377

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR +V+ RR+ F +   ++R+ I+ GLLIA  NIDEII IIR   N D  K  M+ RFSL
Sbjct: 378 HRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQAMMERFSL 437

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q  AI+ +RLR+L  LE  ++ +E + L A+    + +L S + Q   +  E+ EVK
Sbjct: 438 SDAQASAIIEMRLRALTGLEHDKLVAERNELEAQIAYFNDVLGSRELQMKIVKDELLEVK 497

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             +        RR+   E+  A +    +     + + + IS+ G+I+            
Sbjct: 498 AKYGDE-----RRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLAEYRTQNR 549

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
             V       ++ D ++    A   + +L  +  G+ Y L    +  G     G AIQ +
Sbjct: 550 GGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLKVYEIPEGTRSSKGRAIQNV 609

Query: 594 IDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I +  +  +             Y +   +++ +  G     +        + G   + + 
Sbjct: 610 IQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVIR 669

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
             +++      +G   V +     K + F+ + +  + R G GVR  S  +G  +  +IC
Sbjct: 670 EGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPIGRVGAGVRGISLDEGDEVVGMIC 729

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +       +  +   Y +  +     +  RGG G        ++GK +S
Sbjct: 730 IEPNSSQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITEKTGKLIS 779



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 17/223 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L  A        ++ +  G I+  K  +        ++A+  +EGD L  A     +  +
Sbjct: 627 LDDAEYVNNNYIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEV 686

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKG 621
           ++ + +GKA       +      G  ++  I L+   ++V     +      +LV+S  G
Sbjct: 687 MIAAREGKAIRFNENTVRPIGRVGAGVRG-ISLDEGDEVVGMICIEPNSSQDVLVLSENG 745

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                +  E     R GK    ++  EK   +  +  VT +  + ++  +   +  ++DQ
Sbjct: 746 YGKRTDLDEYRITNRGGKGVKTINITEKTGKLISIQAVTDENDLMIINRSGLTIRTAVDQ 805

Query: 678 IPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLT--WIDSAG 716
           I    R   GVR+ + ++G  I+ VI     E      +D AG
Sbjct: 806 IRVAGRATQGVRIINLREGDAIASVIAVPANEEEEPAVLDGAG 848


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/746 (36%), Positives = 435/746 (58%), Gaps = 25/746 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   LR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +KKSAR
Sbjct: 11  ETRPLREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKSAR 70

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  S AA RYTEAR+
Sbjct: 71  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
              A+L+LQ + +  VD+   ++    EP + P++ PN+L NG +GIAVGMAT IP HN+
Sbjct: 131 APYAKLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A + L+D PE     L+ ++  PDFPT   I+ +++ I   Y  G G  R+RAR+
Sbjct: 191 REVVSACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMRARY 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             E        I+VT +PYQV  S+++E+IA  + +K++P++ED+RDES  +   R+V+ 
Sbjct: 251 ERENGD-----IIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLVIT 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D   +ME +F  +D+E  + +N+NV+++   P+V+ L  +L EWL  R + + R
Sbjct: 306 PRSNRVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDTVRR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R+Q +  R+ IL+GLLIAYLNIDE+IAIIR ED+PKPV+++RF L+E Q +AIL L
Sbjct: 366 RLNWRLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPVLMARFGLSERQAEAILEL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E  +L  E++++ ++L S ++    I  E+R   E +      G 
Sbjct: 426 KLRHLAKLEEMKIRGEQGDLERERDELQTILGSDERLRELIKEELRADAEQY------GD 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R +      A +A  +  ++  EP+TVV+S +GW+R+ K H VD   L++K GD  +  
Sbjct: 480 ERRSPLVTRSAARALDETDLMPSEPVTVVLSEKGWVRAAKGHEVDAPGLNYKAGDQYRDH 539

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               +  + + L   G++Y+L A  L S RG GE +   +              D     
Sbjct: 540 APGRSNQQAVFLDHTGRSYSLTAHTLPSARGQGEPLTGRLSPAPGARFEHVLCGDPASLW 599

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLL 671
           ++ +  G  F+   S++ A  R GK  L V    ++      T D    +A V    +LL
Sbjct: 600 VLATDAGYGFVCALSDMYAKNRSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGRLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +F + ++P +++GKG ++          ++  ++ +      +GL+ +    R      +
Sbjct: 660 VFPLSELPRLAKGKGNKIIGIPAAAVKAREELLTGLAVIAPGQGLS-LTVGRRGMTLKPD 718

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  +   RG  G+L+P+G  R    
Sbjct: 719 DLAAYRAPRGRRGALLPRGLRRVDAI 744


>gi|332993179|gb|AEF03234.1| DNA gyrase, A subunit [Alteromonas sp. SN2]
          Length = 898

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/809 (33%), Positives = 411/809 (50%), Gaps = 83/809 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KKSA
Sbjct: 8   ILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    +ALI +P I+I+ L+ +I GPDFPT  + +  R+ I ++YR GRG   +RA+ 
Sbjct: 188 TEVINGCIALIKDPSITIDDLMLHIPGPDFPTAAM-ISGRKGIDDAYRTGRGKIYMRAKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I++ EIPYQV K+RLIEKIAEL+  KRI  +  +RDES +D   ++   
Sbjct: 247 EIETEDNGKETIIINEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVVEV 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   ++L+  ++  + ++T F +NM  L  G+ P+V  L   L+ ++ HRREV+ RR+
Sbjct: 307 KRNESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLEAFILHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410
            F ++    R  IL+GL IA  NID II +I+                            
Sbjct: 366 VFELRKARDRAHILEGLAIALANIDPIIELIKASPGPADAKKALVAQGWDLGDVSQMLER 425

Query: 411 ---DKPKPVM--------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
              D  +P            ++ LTE Q  AIL+LRL  L  LE  +I  E   LL    
Sbjct: 426 AGDDAARPDWLMPEFGIRDGQYFLTEQQAQAILDLRLHRLTGLEHEKILEEYKQLLEVIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +LNS ++    I  E+ +++E F  +     RRT   E++ A      + +IE+E 
Sbjct: 486 ELLHILNSPERLMEVIEEELEKIREEFGDA-----RRT---EITAASHDIDIEDLIEQED 537

Query: 520 ITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S  G+++  K              SA   K  D ++  L A+T D IL  ST G+
Sbjct: 538 VVVTLSREGYVKYQKLNDYESQRRGGRGKSATKMKNEDFIEKLLVANTHDHILCFSTRGR 597

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ G     
Sbjct: 598 LYWLKVYQLPLASRNARGRPIVNILPLEDNERITAILPIKEFEEGKFVLMATANGTVKKT 657

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--------- 676
           + S        G   + ++  +++  V    G D + +  +  K++ F+           
Sbjct: 658 DLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGNV 717

Query: 677 -----------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
                       +  M R   GVR    +D      +     +G   + +    + +   
Sbjct: 718 KLDPETGEELLALRPMGRTATGVRGIRLQDDQRVVSLIVPRGDGP-ILTATENGFGKRTP 776

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   R   G +  K   R+GK + +
Sbjct: 777 LEDYPAKSRATQGVVSIKVSERNGKVVGA 805



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 30/221 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+    ++ +  G ++        +  S  + A++  EGD L   
Sbjct: 625 EDNERITAILPIKEFEEGKFVLMATANGTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAG-----------------NLLSGRGHGEAIQLL--ID 595
              H  D I+L S  GK                         LL+ R  G     +  I 
Sbjct: 685 DITHGDDDIMLFSDAGKVVRFNEKLRDSETGNVKLDPETGEELLALRPMGRTATGVRGIR 744

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-EEKMKL 652
           L  +Q +V+  V      +L  +  G        +  A +R   G   +KVS    K+  
Sbjct: 745 LQDDQRVVSLIVPRGDGPILTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVG 804

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            V+V   + + ++ +   L+   + ++  + R  +GVRL  
Sbjct: 805 AVQVDEANEIMLISDQGTLVRTRVGEVSVVGRNTQGVRLIR 845


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKSEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/777 (30%), Positives = 392/777 (50%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ EA    ++N +   E  L    E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 360 DQMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 420 VGLIELLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ +          RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELAEIVDKHGD-----DRRTRII---AADGEVSDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L      
Sbjct: 532 TDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEALRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + ++  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++   V   + + + +V  N + + FS     +  M R   GV+   +     
Sbjct: 652 INLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNAD-- 709

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             ++   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 710 DRLLSLNVVREGTYLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGA 766



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 14/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ +  D L  A
Sbjct: 604 QPEERIAQVIQIKSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   + + +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 664 VLCSSEEDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREGT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV ++ G A      E     R GK  L +       ++   + V  D     +    
Sbjct: 723 YLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++  +  Q+ +  R  KGVRL +  +G     I     E  
Sbjct: 783 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEENA 824


>gi|332361161|gb|EGJ38965.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1056]
          Length = 826

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/776 (32%), Positives = 401/776 (51%), Gaps = 38/776 (4%)

Query: 6   ISNSNTLV---EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++  NT      + ++ + L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MTEVNTPPGPPADRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMF 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KS+RIVG+V+G  HPHGD S+YD++VRLAQP+  RYPL+ GQGNFG+  
Sbjct: 61  EGGYRPDRGYFKSSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE+RM  +A  +L+ +D+D VDF+  Y+    EPVV PS+FPNLL NG+SG
Sbjct: 121 NDPAAAMRYTESRMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E  EA    +++PE+S E+LL    E I GPDFPTG +IV  R  
Sbjct: 181 IAVGMATNIPPHNLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIV-GRRG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I E+YR GRG   +RA   +EE  +G  C+VVTE+PY V    L   IAEL+   +I  +
Sbjct: 240 IEEAYRTGRGSIIMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D+RDE S+   + ++    R   P +++ +++  + ++T F  NM  L  G VP+ + L
Sbjct: 300 ADVRDESSSRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDG-VPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           D  ++ ++ H+ +V+ RR+ F ++  + R  IL+GLL A   IDE+I +IR         
Sbjct: 359 DQFVRHYIRHQIDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQ 418

Query: 418 VSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               +L    E Q  AIL+++LR L  LE  QI+ E D L+A+    + +L S  +Q   
Sbjct: 419 TGLMALLEIDEVQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDILGSEMRQRRL 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           ++ E+ E+   +        RRT        +    ++ +I +E + V I+  G+     
Sbjct: 479 VSEELGEIIAKYGDE-----RRTKIT---AYEGDMSEEDLIAEEDVVVTITRGGYAKRTS 530

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-- 584
               R+ +     +     ++ D ++      T   +L  +  G+ Y   A  L      
Sbjct: 531 IDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEAARD 590

Query: 585 GHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+ +  ++   +I++   YD    L++ +  G       +E  +    G   
Sbjct: 591 ARGQHLANLLAMQPDEHVMEILSLRNYDEAPYLVLATRSGMVKKTRLAEYDSPRSGGLIA 650

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGI 697
           + +  ++++     V   D + +V +N + + F      +  M R   GV    + +G  
Sbjct: 651 INLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVLRPMGRATAGVIGMRFAEGDE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +          + +    Y +        +  RGG G L  K     GK + +
Sbjct: 711 LLAMEVIRDGDEEVLVATEGGYAKRTPADQYPVQGRGGKGVLTAKIVQSRGKLIGA 766


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/824 (33%), Positives = 401/824 (48%), Gaps = 97/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+       + K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNP+I ++ L+EYI GPDFPT GI +     IV  YR GRG  R+RA
Sbjct: 186 NLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGI-INGTAGIVAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES +D   +  
Sbjct: 245 KADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLMNLKQMLEAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P                     
Sbjct: 364 RTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L    +    I  E+  VK  F      G  R T    S  D   L   +I  
Sbjct: 484 IAGLIHILEDPDRLLQVIREELVNVKAEF------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++                 SA   KE D ++     +T D +L  ++ 
Sbjct: 536 EDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
                E      +GK  + +   + +  V +  G+  + +   N K + F  D++  M R
Sbjct: 656 KTPLGEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSMGR 715

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGL--------------------------------- 709
              GVR      G   +V+   + E                                   
Sbjct: 716 TATGVRGIKMPAG--EEVVSLIVAESAGGIEDENEDDNGVEEIAANGDAVIDGADDASVQ 773

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           RG  G +  +   R+GK +++
Sbjct: 774 YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAA 817



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 45/247 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      ILL +++GK        + S       ++  I +   +++V+  V +S 
Sbjct: 682 VGVGRTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG-IKMPAGEEVVSLIVAESA 740

Query: 612 --------------------------------CKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                             +L  +  G        +     R  +
Sbjct: 741 GGIEDENEDDNGVEEIAANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQ 800

Query: 640 TFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-K 693
             + + + E+    +  V+  +GD V ++ +   L+     +I  + R  +GV L    K
Sbjct: 801 GVIGIQTTERNGKLVAAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSK 860

Query: 694 DGGISDV 700
           D  +  V
Sbjct: 861 DEKLQAV 867


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 419/763 (54%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG  +   + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGG-TIYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KAEFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L  G  P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNG-RPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +     +I  + + + ISN G+I+              V   A 
Sbjct: 477 -GDERRSIIEYAGGDVSIT--DLIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  + +
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDE 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFVCTGDLKDEDYINNHYIIMATKKGQVKKTALEQYSRPRTNGINAITIKDNDELLSA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              TG+  V +  ++ K + F   +   M R   GVR  +    +  +  ++     E  
Sbjct: 654 KLTTGESQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGMVSVNDTES- 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G+ +S
Sbjct: 713 NILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTEKTGELVS 755



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            L+          ++ + +G ++        +  +  ++A+  K+ D L  A       +
Sbjct: 602 DLKDEDYINNHYIIMATKKGQVKKTALEQYSRPRTNGINAITIKDNDELLSAKLTTGESQ 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L    GKA           GR       + +  + ++ +    V D+   +LVVS KG
Sbjct: 662 VMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGMVSVNDTESNILVVSEKG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                   +     R GK    +     + E + +      D + ++ ++   +   +  
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGELVSIKNVTDADDLMIINKSGIAIRMEVAS 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  M R   GVRL + K       + 
Sbjct: 782 LRVMGRATQGVRLINLKGNDSIAAVA 807


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/825 (32%), Positives = 399/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM  +G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMESVFGINMVALIDG-RPQLMNLKQMLQAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            + +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IQGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLISP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSYKDG-------------------------------GISDVICFKICEGLT- 710
              GVR      G                                ++D    ++ E    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAAGVESDVEEESVEDVVETTDVADAAVIEVAENDDT 775

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
                      +LL +++GK        + S       ++  I L   +++V+  V    
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 609 --------------------------------DSTCKLLVVSSKGNAFIVEESEIIANTR 636
                                           D T  +L  +  G       +E     R
Sbjct: 741 AGVESDVEEESVEDVVETTDVADAAVIEVAENDDTAYILTATENGYGKRTPLAEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
              G     +
Sbjct: 861 LSKGEKLQAV 870


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/756 (31%), Positives = 411/756 (54%), Gaps = 28/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++++ +   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++AM ++G  +   +KKSA
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  R+PL+ GQGNFG++DGD+ AA RYTE+RM
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++   L  +D+  V+FR  Y+    EP V P+K PNLL NG SGIAVGMAT+IP HN+
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A LAL+D+P + +++LL YI GPDFPT  ++   R+ + ++Y  GRG  ++R+R 
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALM-YGRQGMRQAYATGRGSIKLRSRL 240

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE  +G   IV+TEIP+ + K+ L+EKIA+L+   ++  + D+RDES  +   ++   
Sbjct: 241 HVEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R+   D+++ +++  + +ET + +N+  +     PQ++ L  IL+ +L HR+EV+ RRS
Sbjct: 301 KRNTLSDIVINTLYKYTALETSYGINLLAVVNN-RPQLLSLKQILELFLEHRKEVILRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            + +   ++R  IL+GL IA  NIDE++ +IR    P   K  ++ RF L+E Q  AIL+
Sbjct: 360 RYDLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQRFELSEVQSQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++  E   +L   E + S++   +     +  E++E+++ F+      
Sbjct: 420 MRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASP---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
            RRT   E    +     + +I  E + + ++  G+I+          K     +S  + 
Sbjct: 476 -RRTEILESDPNEIDI--EDLIPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGANV 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603
            + D +   +       +LL +  G+ + L    +  GR    G  I  L+ L+  + + 
Sbjct: 533 AQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYVA 592

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T      +D+    L  + KG                G   + +   +++  V +V  + 
Sbjct: 593 TVLCMKDFDANHSFLFATKKGMVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREVDEES 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            + ++  +   + F+  ++  M RG  GV+  + + +  +   +          +  + +
Sbjct: 653 EIFLITHHGVAIRFACSEVRSMGRGAAGVKGIALRQEDAVVSCVIINGDGRDQLLTVSEQ 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  +   ++G  L +
Sbjct: 713 GYGKRTAIDYYRQQSRGGKGIINMRLTSKTGGVLGA 748



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 12/206 (5%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           D       +   +   V  S     R+ + H   L A++ ++GD L           I L
Sbjct: 599 DFDANHSFLFATKKGMVKRSAVHLYRNYRPH--GLIAVNLRDGDELIAVREVDEESEIFL 656

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNA 623
           ++  G A       + S  G G A    I L     +V+      D   +LL VS +G  
Sbjct: 657 ITHHGVAIRFACSEVRSM-GRGAAGVKGIALRQEDAVVSCVIINGDGRDQLLTVSEQGYG 715

Query: 624 FIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
                      +R GK  + +         +  ++    D + ++    K+L      I 
Sbjct: 716 KRTAIDYYRQQSRGGKGIINMRLTSKTGGVLGAMMVDETDELIMLTSMHKMLRIGTADIR 775

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFK 704
              R   GV+L S      + V+CF 
Sbjct: 776 ICGRATQGVKLVSL--DSEATVVCFD 799


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/780 (35%), Positives = 417/780 (53%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GI +  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGI-INGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------KPVMVSR---- 420
           R  IL+GL +A  NIDE+IA+I+    P                     K     R    
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPD 434

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIIDDHS---DLTHEDLIPEEHRVVTLSHEG 546

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+S    S            A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 547 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 606

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
             G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 607 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 666

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 667 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 726

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    +      + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 727 AKQNV-IALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 785



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L     +      + + +G I+ +      +  +    AL   EGD L     
Sbjct: 627 DEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDI 686

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++  GKA       +         ++  I L   Q+++   V      +L 
Sbjct: 687 TDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG-IKLKAKQNVIALIVVKPKGNILT 745

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            +  G        +  +  R G+  + +    +   VV        D V ++ +   L+ 
Sbjct: 746 ATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVR 805

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             +++I +M R  +GVRL       +    + I  ++ E
Sbjct: 806 TRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIE 844


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/761 (32%), Positives = 415/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + VV +N   + F+ + +  M R   GV+  + +       +   +  E  T +
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLR--KTDKAVSMDVVIEDETLL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 141/442 (31%), Gaps = 26/442 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         D I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L      V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKA-ITLRKTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVICFKICEGL 709
           +L    +      I     E +
Sbjct: 786 KLMRTSEEEKIVAIAKIKSEDI 807


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/761 (32%), Positives = 415/761 (54%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + V +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E S+  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
             G D + VV +N   + F+ + +  M R   GV+  + +       +   +  E  T +
Sbjct: 651 TKGNDEIIVVTQNGYCIRFNEEDVRPMGRVATGVKAITLR--KTDKAVSMDVVIEDETLL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 709 SISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 141/442 (31%), Gaps = 26/442 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-VTLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         D I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L      V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKA-ITLRKTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVICFKICEGL 709
           +L    +      I     E +
Sbjct: 786 KLMRTSEEEKIVAIAKIKSEDI 807


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/801 (31%), Positives = 409/801 (51%), Gaps = 65/801 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++ T +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MADTPTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDS
Sbjct: 61  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM++VA  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA +DN +I+I++L++YI GPDFPTG I +  R  IV++YR 
Sbjct: 181 GMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAI-INGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  V    +G   I+V EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ +++  + +++   +NM  L  G+ P+V+ L  ++  ++
Sbjct: 300 DKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQ-PKVLNLKEMIAAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--- 422
            HRREV+ RR+ + ++    R  +L+GL +A  NIDE+I +I++                
Sbjct: 359 RHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAW 418

Query: 423 ----------------------------------LTENQVDAILNLRLRSLRKLEEYQIK 448
                                             L+  Q  AIL+LRL  L  LE  ++ 
Sbjct: 419 APGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLL 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E  + L E      +L   ++    I  E+ E    F              E++ +   
Sbjct: 479 QEYADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDE--------RMTEITDSAHD 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I +E   V IS+ G+ ++         +      SA   K+ D ++  L A T 
Sbjct: 531 LTVEDLITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTH 590

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLL 615
             IL  S  GK Y L   N+   S    G  +  L+ L+  + + +      Y++   + 
Sbjct: 591 STILCFSNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYEAGSYIF 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++KG     E ++       G   +++   + +       G   V +     K + F+
Sbjct: 651 MATAKGTVKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFN 710

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGK 732
              +  M R  KGVR      GG   +I   I  +    +  +   Y +        +  
Sbjct: 711 EAAVRPMGRTAKGVRGIRL--GGDYSLISLIIPKQQGRILTVSENGYGKRSETADFPVRG 768

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG +G +      R+G  + +
Sbjct: 769 RGTMGVIAMSTSDRNGALVGA 789



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      + L     E      + + +G ++        +  SV L A+  +EGD L   
Sbjct: 629 DDGERVTSILPVEGYEAGSYIFMATAKGTVKKTEMTQFARQRSVGLRAIELEEGDHLVGT 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  ++L S++GKA       +       + ++  I L  +  +++  +     ++
Sbjct: 689 AVTDGSCDVMLFSSEGKAVRFNEAAVRPMGRTAKGVRG-IRLGGDYSLISLIIPKQQGRI 747

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKL 670
           L VS  G     E ++     R     + +S+ ++   +    +V  GD + ++      
Sbjct: 748 LTVSENGYGKRSETADFPVRGRGTMGVIAMSTSDRNGALVGAEQVWDGDEIMLISNQGTA 807

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   ID+I    R  +GVR+   +D 
Sbjct: 808 VRTRIDEISLQGRNTQGVRVIRTRDE 833


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/767 (31%), Positives = 405/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGNFG++DGDSAAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN EI IE+L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G     IVVTEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRAKAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  +++ ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKDLIRYFIEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ EVKE +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELVEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 RGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  ++  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 78/212 (36%), Gaps = 15/212 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VVFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPDTETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSY-KDGGISDVICFKICEGLTWIDSAGR 717
           VRL +  K       +C    E    I   G 
Sbjct: 794 VRLINLEKRNDEIGSVCKVTSENEDEILEEGN 825


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/773 (35%), Positives = 421/773 (54%), Gaps = 45/773 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM   GL  G  + K 
Sbjct: 3   NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGDQ+VYD+LVRLAQ F  RYPLI GQGNFG+IDGD  AAYRYTEAR
Sbjct: 63  AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +LQ +D++ V F   ++    EP+V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + L++NP+IS+E+LLE++ GPDFPTGG  +   E I + Y  GRG  R+RA+
Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGG-TIYGIEGIRDLYLTGRGLIRIRAK 241

Query: 256 WCVEEVGRG------------------SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             +E   +G                     I++TEIPYQV K++LIEKIAEL+  K+I  
Sbjct: 242 VKIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEG 301

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + +IRDES  +   V+    +   P++++ +++  + MET F   +  +  G+ P+++ L
Sbjct: 302 ITEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQ-PRILNL 360

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
              L E+L HR++V+ +R++F ++  + +  IL GL IA  N+DE+I+IIR     ++ K
Sbjct: 361 KEALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAK 420

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++RF LTE Q  AIL++RL+ L  LE  +I  + + +L E E++ ++L S +   N 
Sbjct: 421 MKLMNRFPLTEIQAQAILDMRLQRLTGLEREKIIQDYETILKEIERLKAILESEELVRNI 480

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           I  E+ E+K+ +              E+    K    + +I +E + + +++ G+I+   
Sbjct: 481 IKDELIEIKQKYGDERK--------TEIVTETKEINIEDLITQEDMVITLTHLGYIKRTS 532

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-- 584
                  K     L+ +     D L+  L   T D I+  S  G+ Y L    +      
Sbjct: 533 LSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGRVYCLKVYQIPEAGRV 592

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G+AI  L+ L   + I TA V        L++ + KG        E     +KG   +
Sbjct: 593 SKGKAIVNLLPLQEGEKITTALVCKDIEEGYLMMFTKKGFVKKTSLEEFKNIRQKGVIAI 652

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +   +++  V K TG + + +  +    + FS   +  M R  +GV    + +     V
Sbjct: 653 DLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDEVV 712

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + EG   +    +   +        L  RGG G    K   ++G  +SS
Sbjct: 713 SADVVSEGSFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSLKTGNVVSS 765



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 13/203 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E   ++ + +G+++              + A+  +EGD L         +++++ +  G
Sbjct: 620 EEGYLMMFTKKGFVKKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMG 679

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            A      ++         +  +       ++V+A V      +L ++ KG        E
Sbjct: 680 MAVRFSEIDVRPMGRTARGVIGIRFSEPEDEVVSADVVSEGSFVLTITEKGIGKKTPIEE 739

Query: 631 IIANTRKGKTFLKVSSEEKMKLVV---KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
                R G     +    K   VV   +V  D   ++  + K++   + QI    R   G
Sbjct: 740 YRLQHRGGTGVKNIKLSLKTGNVVSSLQVKEDDEIIICSSSKMIRLKVSQIRPQGRATTG 799

Query: 687 VRLQSYKDGGISDVICF-KICEG 708
           VRL          V+   +I EG
Sbjct: 800 VRLIDLSAD--DTVVSMGRILEG 820


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R +   +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/792 (33%), Positives = 418/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMS +  D+  A+KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RYPL+ GQGNFG+IDGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  PVV P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALID+P++SI++L+E+I GPDFPT GI +  R  IVE+YR GRG   +RA
Sbjct: 186 NLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGI-INGRAGIVEAYRTGRGRVYIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +       +++TE+PYQ+ KSRLIEKIAEL+  KR+  + ++RDES ++   V+
Sbjct: 245 RHEVEHDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +PD+++ ++F  + +ET F +NM  L  G  P+++ L  +L  ++ HRREV+ 
Sbjct: 305 IELRRGENPDVIINNLFKQTQLETVFGINMVALIDGE-PRILNLKEMLDAFIRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  IL+GL +A  NIDEIIA+I+                         
Sbjct: 364 RRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  ++ L+  Q  AIL+LRL  L  LE  ++++E   +L 
Sbjct: 424 LERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREILE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               +  +L + ++    I  E++ + E F        RRT   E++ + +      +I+
Sbjct: 484 RIADLLDILGNPERLMQVIRDELQAIVEEFGDE-----RRT---EITSSRRDLTVADLID 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS+ G+ ++         +      +A   K+ D ++  L A++ D IL  S 
Sbjct: 536 EEELVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT---AFVYDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G  +  ++ L+  + I T      Y     +L+ +S G  
Sbjct: 596 RGKVYWLRVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                         G   L +   + +       G   + +     K + F  + +  MS
Sbjct: 656 KKTPLPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR     +G    V      +    + ++   Y +  N        RG  G +  
Sbjct: 716 RTARGVRGIRMAEGHHV-VSLIIPQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAM 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G  +++
Sbjct: 775 QCSDRNGNLVTA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             ++   ++ ++ G ++        +  S  L AL   EGD+L  A     +  I+L ST
Sbjct: 640 YPEDQFVLMATSAGVVKKTPLPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFST 699

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GKA       +         ++  I +     +V+  +      LL+ S  G       
Sbjct: 700 AGKAVRFKEEAVRPMSRTARGVRG-IRMAEGHHVVSLIIPQDDAVLLMASEHGYGKRTNL 758

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
           +E     R  +  + +     +   +  +    GD + ++ +   L+    D++  +SR 
Sbjct: 759 NEFPTYGRGSQGVIAMQCSDRNGNLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRN 818

Query: 684 GKGVRLQSYKDGGISDVICFKICE 707
            +GVRL          V   +I E
Sbjct: 819 TQGVRLIKLSQEDERLVGVERIAE 842


>gi|332366850|gb|EGJ44591.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1059]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/764 (31%), Positives = 394/764 (51%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 12  DRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 72  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+ +A   L++NP      ++E  + Y+ GPDFPT G IV S + I ++Y  GRG  
Sbjct: 192 NLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGS-QGINDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++  +  I DE S    
Sbjct: 251 RMRGVTSIEEEGS-RQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+ 
Sbjct: 310 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVTHQI 368

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+  R++  ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E 
Sbjct: 369 EVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARSGLIDLLTIDEI 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   +  E++E+   +
Sbjct: 429 QADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKY 488

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT       A     ++ +I +E + V I++ G+         +S +    
Sbjct: 489 GDE-----RRTQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 540

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++ 
Sbjct: 541 GVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 600

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ +++G       S+  +N   G   + +  E+K+   
Sbjct: 601 QPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLGEEDKLIGA 660

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
              + D  + +V E  + + FS D   +  M R   GV+   ++       +     +  
Sbjct: 661 ALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMRFRGDDQLLAMTVVRSDAY 720

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + ++G  Y +  +        RGG+G +  K  P+ GK +++
Sbjct: 721 LLVATSG-GYGKRTSLEEYSQQGRGGLGVVTFKYTPKRGKLIAA 763



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +    + +      A++  E D L  A
Sbjct: 601 QPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLGEEDKLIGA 660

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G++    A +    R  G A   +  +    +  ++   V  S  
Sbjct: 661 ALCSNDDELLLVSEEGQSIRFSADD-DQLRPMGRATAGVKGMRFRGDDQLLAMTVVRSDA 719

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
            LLV +S G        E     R G   +         + +  VV    D +  +    
Sbjct: 720 YLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYTPKRGKLIAAVVVDEDDQIFAITSAG 779

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            ++   ++QI   SR   GVRL + +DG     I
Sbjct: 780 GVIRTEVNQIRPSSRATMGVRLVNLEDGVELLAI 813


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/780 (35%), Positives = 417/780 (53%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ YI GPDFPT GI +  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGI-INGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------KPVMVSR---- 420
           R  IL+GL +A  NIDE+IA+I+    P                     K     R    
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIIDDHS---DLTHEDLIPEEHRVVTLSHEG 548

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+S    S            A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
             G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    +      + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNV-IALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L     +      + + +G I+ +      +  +    AL   EGD L     
Sbjct: 629 DEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDI 688

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++  GKA       +         ++  I L   Q+++   V      +L 
Sbjct: 689 TDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG-IKLKAKQNVIALIVVKPKGNILT 747

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            +  G        +  +  R G+  + +    +   VV        D V ++ +   L+ 
Sbjct: 748 ATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVR 807

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             +++I +M R  +GVRL       +    + I  ++ E
Sbjct: 808 TRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIE 846


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/767 (30%), Positives = 402/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY L+ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A IDN +I IE L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E        I+VTEIPY V K+ LI+ IA+L   KRI  + +  DES  +   
Sbjct: 241 MRAKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR +V
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTLLQTSFGVNNVALV-HGRPRLLNLKDLIKYFVEHRHDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + +  +   ++ +L + +     I  E+ E++  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIQNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F  + +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHENAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/755 (34%), Positives = 412/755 (54%), Gaps = 31/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   +++ ++ YA+S I +RA+PD+RDG KPV RRI++AM + GL       KSA
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEVI K HPHGDQ+VYD++VRLAQ +  RYPL+ GQGNFG+IDGD AAAYRYTEAR+
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +Q+A  +L+ +D++ VDF+  ++   +EP V P+ FPNLL NG++GIAVGMATS+P HN+
Sbjct: 124 SQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A+ID PEI++++++ Y+ GPDFPTGG + +    I E+Y  GRG  ++RA+ 
Sbjct: 184 SEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGRLHKG--GIREAYATGRGSLKLRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE   G   +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +    
Sbjct: 242 RQEE-KNGRVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +PD+++  +F  ++++T F +NM  +  G  P+V+PL  +++ +L HRR+V+ RR+
Sbjct: 301 KRGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGE-PRVLPLLELMRHYLEHRRQVVTRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L+GLLIA  N+DE+IA+IR      + K  +++RF LTE Q  AIL+
Sbjct: 360 RFELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIARFGLTEVQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +I++E   L      + ++L    + W  +  E+  VKE         
Sbjct: 420 MRLQRLTGLEREKIQAEHRELQETIAYLRAILEDEARLWGVVKEELLAVKERHGD----- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E          + +IE EP+ + ++  G+++              V + A   
Sbjct: 475 TRRTVINE---FAGGFNPEDLIEDEPMVITMTAAGFLKRTPLEAYRAQGRGGVGVQASRS 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D       A+  D +L  +  G+ Y      L   S +  G  I+ ++ L  ++++ 
Sbjct: 532 KDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQARGVHIRSILPLAEDEEVA 591

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           T             +  + +G        E    T  G   + +   + +  V     D 
Sbjct: 592 TLLSVRGLTIPGHFVFATRRGLIKKTPIREYQNLTASGLIAINLVDGDTLIQVGVAQEDA 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            V +   N + + F++ ++    R  +GVR    KDG  +  +I          +    R
Sbjct: 652 EVILATRNGQAIRFALTEVRATGRASQGVRGVRLKDGDEVVSLIVVPKGWTGDLLAVGTR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +           RGG+G L  +  P+ G+  +
Sbjct: 712 GYGKRTPVEEYPTQGRGGLGVLTFRSTPKVGQLAA 746



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 18/190 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + RG I+              L A++  +GD+L     A     ++L + +G+A   
Sbjct: 606 VFATRRGLIKKTPIREYQNLTASGLIAINLVDGDTLIQVGVAQEDAEVILATRNGQAIR- 664

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEI 631
               L   R  G A Q +  + L    ++V+  V     T  LL V ++G        E 
Sbjct: 665 --FALTEVRATGRASQGVRGVRLKDGDEVVSLIVVPKGWTGDLLAVGTRGYGKRTPVEEY 722

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-G 686
               R G   L   S  K   +  ++ V GD   +V       +   +DQ+ + SR   G
Sbjct: 723 PTQGRGGLGVLTFRSTPKVGQLAALLAVEGDEDLLVLSRRGLAIRTRVDQVAQYSRATSG 782

Query: 687 VRLQSYKDGG 696
           V++ + ++  
Sbjct: 783 VKIMNLQEED 792



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 13/175 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPI-TVVISNRGW--------IRSLKSHSVDLSALHFKEGD 549
              ++  D  TL Q  + +E    ++ +  G         +R+    S  +  +  K+GD
Sbjct: 630 LIAINLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRATGRASQGVRGVRLKDGD 689

Query: 550 SLKIALHAHT--TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +   +      T  +L + T G     P     +    G  +           +     
Sbjct: 690 EVVSLIVVPKGWTGDLLAVGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTPKVGQLAALLA 749

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            +    LLV+S +G A      ++   +R   G   + +  E+++     +    
Sbjct: 750 VEGDEDLLVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/780 (35%), Positives = 417/780 (53%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GI +  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGI-INGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------KPVMVSR---- 420
           R  IL+GL +A  NIDE+IA+I+    P                     K     R    
Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 434

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIIDDHS---DLTHEDLIPEEHRVVTLSHEG 546

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+S    S            A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 547 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 606

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
             G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 607 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 666

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 667 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 726

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    +      + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 727 AKQNV-IALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 785



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L     +      + + +G I+ +      +  +    AL   EGD L     
Sbjct: 627 DEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDI 686

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++  GKA       +         ++  I L   Q+++   V      +L 
Sbjct: 687 TDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG-IKLKAKQNVIALIVVKPKGNILT 745

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            +  G        +  +  R G+  + +    +   VV        D V ++ +   L+ 
Sbjct: 746 ATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVR 805

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             +++I +M R  +GVRL       +    + I  ++ E
Sbjct: 806 TRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIE 844


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ E+K  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEIKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/763 (31%), Positives = 408/763 (53%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+ +  A KK
Sbjct: 7   ENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNRAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQP+  RYPL+ GQGNFG++DGD+ AA RYTEA
Sbjct: 67  SARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++A+ +L  +++D VDF+  +++  SEP V P+KFPNLL NG+SGIAVGMAT++  H
Sbjct: 127 RLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN EI+I +L+E++  PDFPTGGI +     +  +   GRG   +R+
Sbjct: 187 NLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGI-IYGYNGVRSAMETGRGSIIMRS 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E    G   I+VTEIPY + K+ +IE+IA LI  K++  + DIRDES  +   ++F
Sbjct: 246 KAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMRIVF 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  +F  + ++T F +N   L  G  P ++ L  ++K ++ HR  V+ R
Sbjct: 306 DLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKG-RPVLLNLKDLIKHYVDHRIVVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  ++R  IL+GLLIA  N+D +IA+I   R+ +  K  ++ +F L+E Q  AI
Sbjct: 365 RTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQFELSEIQARAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E + ++     +  +L +  +++  I  E+ ++KE +  +  
Sbjct: 425 LDMRLQRLTGLEREKIVKEYEEIMILIADLKDILANEYRKYEIIKTELTDIKERYGDA-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
               R T  E S  + +   + MI  E + + IS  G+I+              V    +
Sbjct: 483 ----RRTQIEFSAEEFSD--EDMIADEEMLITISKEGYIKRTPLSEYRTQTRGGVGSRGV 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             K+ D  +    A   + +L+ +  GK + +    +  G     G  IQ LI L     
Sbjct: 537 KTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEGSKTSKGRPIQNLISLESGDS 596

Query: 602 IVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I +           Y +   L++ + +G                G   + ++  +++  V
Sbjct: 597 IRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSRPRTNGIIAISINEGDRLLNV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
               GD  + +     + + F+   +  M R   GVR  +    D  +  ++C    E  
Sbjct: 657 ALTNGDNDIVIASAAGRAVRFNEKGVRPMGRTAAGVRGINLNDPDNKVIGMVCIS-REDA 715

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   + +        +  RGG G        + GK ++
Sbjct: 716 QLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGKLVA 758


>gi|332654826|ref|ZP_08420568.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
 gi|332516169|gb|EGJ45777.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/772 (31%), Positives = 400/772 (51%), Gaps = 30/772 (3%)

Query: 1   MGVDNISNSNT--LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M      +       ++ +K   L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSKKPQYDPEEIRFPDQVIKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E GL     FKKSA  VG+V+G+ HPHGDQSVYD+LVRL Q F  RY L+ G GNF
Sbjct: 61  YAMYEDGLTSDKPFKKSATCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD  AAYRYTEARM++++  +L+ ++++ VD+   ++E   EP V PS+FPNLL N
Sbjct: 121 GSIDGDPPAAYRYTEARMSKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT+IP HN+ E+  A + ++DN   +++ L+E+I GPDFPT G+I+  R  
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIM-GRSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  G+G  RVRAR   EE G+    I+VTEIPYQV K  LI+ +A+ +  KR+  +
Sbjct: 240 IRAAYATGKGHIRVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPL 357
            DIRDES  +   ++    R  +P +++  +   + ++  F +NM  L    + P+++ L
Sbjct: 300 SDIRDESDRNGMRIVIELKRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPV 416
             IL E++A + +++ RR+ +  +    R  +L+GLLIA  NIDE+I IIR   D  K  
Sbjct: 360 REILDEYIAFQEQIITRRTIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYDNAKER 419

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++RF L + Q  AIL++RL++L+ L+  ++++E   L       D LL+        + 
Sbjct: 420 LMTRFGLDDVQAQAILDMRLKALQGLDREKLEAEYKELEERIAYYDKLLSDEGLLRQVLK 479

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+++ +              E++  +     + +IE+E     ++  G+I+     
Sbjct: 480 DELTEIRDKYGDQRK--------TEIAFVEDDLDIEDLIEEEQCVFTLTQAGYIKRTPVS 531

Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                         +  ++ D +     A T D +   +  GK Y      +        
Sbjct: 532 EYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTAK 591

Query: 587 GEAIQLLIDLNHNQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G  I  ++ +   + + T      + +    L++V+  G    +  + +      G   L
Sbjct: 592 GTNIVNILQVEQGEKVQTMIHTRELDNPDLYLVMVTRNGTVKRLPVTALKNIRNSGIRAL 651

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           ++   +++  V +  G   + +   +   + F  + +  M R   GVR    ++G    V
Sbjct: 652 RLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRPMGRDAVGVRGIRLREGDYV-V 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +   G T +    + Y +        +  RGG+G        ++GK + 
Sbjct: 711 SAARATAGRTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTEKTGKIVG 762



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 83/229 (36%), Gaps = 13/229 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSL 551
              +  +       + +   +   V+++  G ++ L         +  + AL  +EGD L
Sbjct: 600 QVEQGEKVQTMIHTRELDNPDLYLVMVTRNGTVKRLPVTALKNIRNSGIRALRLEEGDQL 659

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                   T +IL+ + DG A      ++         ++  I L     +V+A    + 
Sbjct: 660 ISVRETDGTKKILIATHDGMAVCFDENDVRPMGRDAVGVRG-IRLREGDYVVSAARATAG 718

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGEN 667
             +L ++ KG        +     R G      +  EK   +  +  V G + + +V + 
Sbjct: 719 RTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTEKTGKIVGIKVVDGSEDLLLVTQA 778

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             L+   +D I E  R   GV +  +K+ G   VI   + E     + A
Sbjct: 779 GILIRTHVDAIREAGRATQGVIVMRFKEEG-DKVISLALAEREETAEVA 826


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 404/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E S+E +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR      + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T       D     + +I +E + + ++N G+I+               
Sbjct: 485 ------GDERRTHIGYDEFD--ISMEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +        G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG        + +   + G   + +  ++ +  V
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V +  + + F+   +    R   GVR  +  D    ++I  ++  +G  
Sbjct: 657 KVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDN--DEIIGMQMSSQGKD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 MLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 12/212 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 AT+     E      + + +G ++              L+A+  +E D L    
Sbjct: 598 PDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEVK 657

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L
Sbjct: 658 VTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDML 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLL 671
           +VS KG        E     R GK        EK   VV          + ++     ++
Sbjct: 717 IVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVI 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I +  R   GV+L +  +      + 
Sbjct: 777 RMKCSDISQYGRITSGVKLINLPEKERVASVA 808


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 404/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E S+E +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR      + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T       D     + +I +E + + ++N G+I+               
Sbjct: 485 ------GDERRTHIGYDEFD--ISMEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +        G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG        + +   + G   + +  ++ +  V
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V +  + + F+   +    R   GVR  +  D    ++I  ++  +G  
Sbjct: 657 KVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDN--DEIIGMQMSSQGKD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 MLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 12/212 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 AT+     E      + + +G ++              L+A+  +E D L    
Sbjct: 598 PDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEVK 657

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L
Sbjct: 658 VTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDML 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLL 671
           +VS KG        E     R GK        EK   VV          + ++     ++
Sbjct: 717 IVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVI 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I +  R   GV+L +  +      + 
Sbjct: 777 RMKCSDISQYGRITSGVKLINLPEKEKVASVA 808


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/727 (50%), Positives = 514/727 (70%), Gaps = 6/727 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L  AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ LD  + FKK 
Sbjct: 7   HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG++DGD+ AA RYTEAR
Sbjct: 67  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN
Sbjct: 127 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C AA  L+  P  + ++LLE + GPDFPTGG+IVE  ++I+++Y  GRG FR+RAR
Sbjct: 187 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W VE+    +W IVVT+IPYQVQKSRLIE+IA+L+  K++PLL DIRDES +++R++L P
Sbjct: 247 WEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLILEP 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K R ++P++LME++F  + +E+RF LNMNVL   R P VM L  +++ WL HR EVL RR
Sbjct: 307 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHEVLERR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           S  R+ A++RR+EIL G L  YLN+DE+I IIR ED  K  +++ F LT+ Q +++LN+R
Sbjct: 367 SRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 426

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LRSLR+LEE +I+ E D L AE+  + +LL+S KQ+W  I  E+  + + F K   LG R
Sbjct: 427 LRSLRRLEEMEIRKEHDALSAEQAALMALLDSEKQRWKTIERELTTMIKAFGK-GRLGER 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R+T     +    ++ + + E+EP+T+++S +GW+R++K H+VDL    FKEGD+ K+A+
Sbjct: 486 RSTILSAPKPVDISVVEEV-EREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDAFKLAI 544

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              T+DR+   +TDG+AYT+   +L  GRG G+ I+LLIDL++++D++  F  +   + L
Sbjct: 545 PCQTSDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRRL 604

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
           V SS G   +VEE  ++A  R G+  L +   E  ++ V   GDHVAVVG+NR+ LIF +
Sbjct: 605 VASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARICVPAEGDHVAVVGDNRRFLIFPL 664

Query: 676 DQIPEMSRGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +Q+P M+RG GV LQ Y D GG+   + F   +GL W    G +  R   DL  W+ +R 
Sbjct: 665 EQLPVMARGLGVALQKYSDGGGLRQAVVFTAADGLHW---PGTARVRQFADLQDWVSRRA 721

Query: 735 GVGSLVP 741
            VG + P
Sbjct: 722 AVGKVAP 728


>gi|332360842|gb|EGJ38648.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK49]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISKTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAK 821


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ +++D VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKARGGKGIKTANITDKNGPLAG 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKARGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGTADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                  T  +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGTADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEANDKEDVAE 821


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/780 (35%), Positives = 417/780 (53%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GI +  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGI-INGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVV E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------KPVMVSR---- 420
           R  IL+GL +A  NIDE+IA+I+    P                     K     R    
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIIDDHS---DLTHEDLIPEEHRVVTLSHEG 548

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+S    S            A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
             G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    +      + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNV-IALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L     +      + + +G I+ +      +  +    AL   EGD L     
Sbjct: 629 DEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDI 688

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++  GKA       +         ++  I L   Q+++   V      +L 
Sbjct: 689 TDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG-IKLKAKQNVIALIVVKPKGNILT 747

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            +  G        +  +  R G+  + +    +   VV        D V ++ +   L+ 
Sbjct: 748 ATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVR 807

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             +++I +M R  +GVRL       +    + I  ++ E
Sbjct: 808 TRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIE 846


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 408/765 (53%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRRI+  M E+G+      K
Sbjct: 6   NENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD +VYD++VR+AQP+  RY L+ GQGNFG+IDGD+ AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  +++D VD++  +++   EPVV P+K P LL NG SGIAVGMAT++  
Sbjct: 126 ARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATNMAP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    +A I+N EI+I +L+EY+I PDFPTGGI +     +  ++  GRG   +R
Sbjct: 186 HNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGI-IYGYNGVKAAFETGRGRIVMR 244

Query: 254 ARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            +  +E    G    IV+TEIPY V K+ ++EK A+LI  K+I  +  IRDES      +
Sbjct: 245 GKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           ++   R   P +++ +++  + ++T F +N   L  G  P  + L  ++  ++ HR EV+
Sbjct: 305 VYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKG-RPYTLNLKDLIVHYVDHRHEVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + ++  ++R  IL+G LIA  ++DE+I++IRN   P+        RF L+E Q  
Sbjct: 364 IRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIERFDLSEIQAR 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  +E  +I  E   ++A  E++  +L +  ++   I  E+ E+K+ ++  
Sbjct: 424 AILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKTELTEMKDRYAD- 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
                RRT   E+    +    + MI  E + + +S++G+++                  
Sbjct: 483 ----DRRT---EIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGGVGSR 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
            +  KE D  +    A T + +L+ +  GK + L A  +  G     G  IQ LI++  +
Sbjct: 536 GVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTSKGRPIQNLINIQSD 595

Query: 600 QDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             I +    +            L++V+ KG        +       G   L +  ++++ 
Sbjct: 596 DRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYSRPRTNGIIALNIREDDQLV 655

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICE 707
            V    GD H+ +  ++ + + F    +  M R   GV+  +   +D  +  ++C    +
Sbjct: 656 NVKMTNGDQHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITLTGQDDFVIGMVCAS-ED 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +        +  RGG G        ++G  ++
Sbjct: 715 TATLLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVTDKTGALVA 759



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/514 (14%), Positives = 150/514 (29%), Gaps = 52/514 (10%)

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI------PYQVQKSRLIEK 285
               R  +   Y L R          + +  +      V  +      PY +    LI  
Sbjct: 295 DESDRSGMRIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVH 354

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRI-------------VLFPKNRSLDPDLLMESIFML 332
             +      I   +    E+ +   I             V+     S DP+     +   
Sbjct: 355 YVDHRHEVVIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER 414

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
            D+     +    +   R+ ++  ++             L       ++  D+R+EI+K 
Sbjct: 415 FDLSE---IQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKT 471

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            L    +          E   +          E  +  + +        L EY+ +    
Sbjct: 472 ELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGG 531

Query: 453 NLLA----EKEKIDSLL--NSGKQQWNQIACE-----IREVKEIFSKSTDLGRRRTTFCE 501
                   +++     L   S          +     ++         T  GR       
Sbjct: 532 VGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTSKGRPIQNLIN 591

Query: 502 VSRADKA-------TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEG 548
           +   D+         L  A        V+++ +G I+              + AL+ +E 
Sbjct: 592 IQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYSRPRTNGIIALNIRED 651

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L      +    I++ +  G+A   P   +         ++ +     +  ++     
Sbjct: 652 DQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITLTGQDDFVIGMVCA 711

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVK--VTGDHVAV 663
            + T  LLVVS  G       +E     R GK    + V+ +    + +K     D + +
Sbjct: 712 SEDTATLLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVTDKTGALVAIKEVTDADDLMI 771

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + ++  ++  S+D +  M R   GVRL    D  
Sbjct: 772 INKSGIIIRISMDTLRIMGRATQGVRLIKVGDSD 805


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/760 (34%), Positives = 408/760 (53%), Gaps = 32/760 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +   + V +   +   YL YA+S I  RA+PD RDG KPVHRRI+ AM E+  DF   +K
Sbjct: 5   DARKEDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE
Sbjct: 65  KSARVVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++A  +L  +D+D VDF D Y+    EPVV P+K P LL NG+SGIAVGMAT+IP 
Sbjct: 125 VRMAKLANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A +AL+DNP+I + +L+ ++ GPDFPT G  +   E I ++YR GRG  ++R
Sbjct: 185 HNLGEVARALVALLDNPDIGVRELMRHVPGPDFPTRG-FIHGAEGIEQAYRDGRGSIQIR 243

Query: 254 ARWCVEEVGRGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           A+  +E V R     I+VTE+PYQV K+RL+EK+AEL+  K+I  + D+RDES  D   V
Sbjct: 244 AKANIETVARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   R   P +++  +F  + M+T F +NM  +     P++M L  +L+ ++ HRRE++
Sbjct: 304 VFDLRRDAVPQVVLNQLFKFTQMQTTFGINMLAI-DRGRPRLMGLKDVLELFIEHRREIV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR++F +   + R  IL+GL IA  N+DE+I +IR   N  + K  ++SRFSL+E Q  
Sbjct: 363 LRRTAFDLAKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSRFSLSEKQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  LE  +I +E   ++ E  ++  +L S ++    I  E   + E F   
Sbjct: 423 AILEMRLQRLTGLERDKIMAEYREVIKEIARLRHILESDEEVRRIIREETLLLAEEFGDK 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+         + MI +E + V +S+ G+I+          +       
Sbjct: 483 -----RRT---EIVGRVSDIELEDMIAEEEMVVTLSHGGYIKRTPTSLYRAQRRGGKGSR 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +  K+ D ++    A T   +L+ +  G+ Y L    +        G+AI  L+ +  +
Sbjct: 535 GMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKAIVNLVQMLPD 594

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T      +    ++++ + KG     E          G   + ++  + +      
Sbjct: 595 ESVSTVLAVREFVEGRQVIMATQKGVIKKTELMSFSRPRAGGIIAINLAEGDHLVSARLT 654

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWID 713
            G+  V +     + + F   Q+  M R   GV+    +      V+  +   G  T + 
Sbjct: 655 DGEMEVFLATRQGQAIRFHESQVRSMGRAAAGVKGIDVE--HDDQVVAMEAVAGAPTMLT 712

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +           R G G +  K   R+G  +S+
Sbjct: 713 ITENGFGKRTRMDEYPARNRAGKGVITIKTTTRNGHVVSA 752



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 18/210 (8%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD---RILLLSTDGK 571
            ++ + +G I+        +  +  + A++  EGD     + A  TD    + L +  G+
Sbjct: 612 VIMATQKGVIKKTELMSFSRPRAGGIIAINLAEGD---HLVSARLTDGEMEVFLATRQGQ 668

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A       + S       ++  ID+ H+  +V          +L ++  G        E 
Sbjct: 669 AIRFHESQVRSMGRAAAGVKG-IDVEHDDQVVAMEAVAGAPTMLTITENGFGKRTRMDEY 727

Query: 632 IANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            A  R GK  + +     +   +  +V    D V ++ +  K++   +  I  + R  +G
Sbjct: 728 PARNRAGKGVITIKTTTRNGHVVSALVVGDDDEVMLITDVGKVIRMKVGGISVIGRNTQG 787

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           V+L   + G     +      G   +++  
Sbjct: 788 VKLIDLEPGERLVAVARLAEPGDDEVEAGE 817


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/764 (33%), Positives = 430/764 (56%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +K V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMSE+G+      +K
Sbjct: 8   DRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYD++VR+AQ F  RY  I GQGNFG+IDGD AAA RYTEA
Sbjct: 68  SARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L+ +++D VDF   ++E + EP V P++ P+LL NG++GIAVGMAT+IP H
Sbjct: 128 KMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDNP+I+I++L+ +I GPDFPT GI++  +  I E+YR GRG  ++R+
Sbjct: 188 NLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILL-GKSGIKEAYRTGRGRIKIRS 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           +  +E   +G   IVVTEIPY V KS+L+EKIAEL+  KR+  + D+RDE+  +    ++
Sbjct: 247 KVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRIV 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV------PQVMPLDGILKEWLAH 367
               R  +  +++  ++  + ++  F + M  L           P+V+ L  +L  ++ H
Sbjct: 307 IELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVEH 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           ++E++ RR+ F ++  + R  IL+GL IA  NIDE+IA+IR   +  + K  ++ RF+LT
Sbjct: 367 QKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMERFALT 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RL+ L  LE  +I+ E   L     +  ++L   +   N I  E+ E+KE
Sbjct: 427 EIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEYKAILADEQLVLNIIKDELTEIKE 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            +      G  R T  ++   D     + +IE+E + + +++ G+++          K  
Sbjct: 487 KY------GDERRTSFDIDVEDFDV--EDLIEEEEVVITMTHIGYVKRISADTYRSQKRG 538

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
              ++AL  +E D ++      T   +L  S  GK Y L A  +  G     G AI  ++
Sbjct: 539 GKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVPEGGRTARGTAIVNIL 598

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L+ ++ I T      + +   L++ + +G     + +E  ++ + G   + +   +++ 
Sbjct: 599 QLDPDEKITTMIPVKEFTADKCLIMATKQGIIKKTDLTEYDSSRKNGIIGINLREGDELI 658

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEG 708
            V  V   + + +  +    + F+  ++  + R   GVR    +D  +  V+   I  + 
Sbjct: 659 NVRLVEENEDIVMGTQKGYAIRFTSKEVRPLKRTSIGVRGIELRDDDV--VVGMDIVSDD 716

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L  +  +   Y +  +       KRGG G    K   ++G+ + 
Sbjct: 717 LFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKTGELVG 760



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + F         R T        +        +       +   ++ + +G I+      
Sbjct: 578 KAFEVPEGGRTARGTAIVNILQLDPDEKITTMIPVKEFTADKCLIMATKQGIIKKTDLTE 637

Query: 538 VDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            D S       ++ +EGD L         + I++ +  G A    +  +   +     ++
Sbjct: 638 YDSSRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLKRTSIGVR 697

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I+L  +  +V   +      +L VS  G   +    +  +  R GK      +   + 
Sbjct: 698 G-IELRDDDVVVGMDIVSDDLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKTG 756

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           E +   V      + ++     ++    + I  + R  +GVRL   + G     I 
Sbjct: 757 ELVGFCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATIS 812



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 68/167 (40%), Gaps = 11/167 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSL 551
             +   D+    + + E E I V+ + +G+        +R LK  S+ +  +  ++ D +
Sbjct: 649 INLREGDELINVRLVEENEDI-VMGTQKGYAIRFTSKEVRPLKRTSIGVRGIELRDDDVV 707

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +L +S +G           S +  G+ +Q         ++V   V    
Sbjct: 708 VGMDIVSDDLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTKKTGELVGFCVISRD 767

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            ++++++++G    +E ++I    R   G   +K+ + E++  + KV
Sbjct: 768 GEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKV 814


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/795 (32%), Positives = 411/795 (51%), Gaps = 65/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  A+
Sbjct: 4   IAKEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +  LALIDNPEI+I++L+E+I GPDFPTG I +  R  I+++YR GRG   V
Sbjct: 184 PHNLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAI-INGRAGILQAYRTGRGRIYV 242

Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  VE   + G   IV+ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D   
Sbjct: 243 RAQAEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    ++++ +++  + ++  F +N+  L   +   +  L  +L+ ++ HRREV
Sbjct: 303 VVVEIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLN-LKELLEYFVKHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------- 420
           + RR+ + ++    R  +L+G  +A  NIDE+I +I++   P     +            
Sbjct: 362 VTRRTVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVS 421

Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL+LRL  L  +E  ++ +E + 
Sbjct: 422 EFLDRAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEE 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
            L +      +L + ++  N I  E+           D G  R T  + S  D     + 
Sbjct: 482 KLIQIAGYLEILGNPERLMNVIREELE------VIYNDYGDERRTVIQQSMTD--LTHED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E   V IS+ G+ +S         +   +  +A   K+ D ++  L A+T D +L 
Sbjct: 534 LISEEDRVVTISHGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLC 593

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ++ GK + L    +     +  G  +  L+ L   + I +      +D    + + ++ 
Sbjct: 594 FTSVGKVFWLKVYQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFDDDHFIFMATAD 653

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G       S+       G   + +   + +       G   + ++    K   FS + + 
Sbjct: 654 GTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVR 713

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     D  +S +      EG   +  +   + +           RG  G 
Sbjct: 714 SMGRVSRGVRGVRMADD-VSVIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGV 772

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G  + +
Sbjct: 773 IAMQMSERNGCLVGA 787



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      + L     + +    + +  G ++        +  SV L A+   EGD L   
Sbjct: 627 EEGERITSILPVREFDDDHFIFMATADGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGT 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T  I+LL++ GKA      N+ S       ++  + +  +  ++   V +   K+
Sbjct: 687 AITDGTKDIILLTSAGKAARFSEENVRSMGRVSRGVRG-VRMADDVSVIAMVVPEEGGKV 745

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L VS  G     E +E  A  R  +G   +++S      +       GD + ++     L
Sbjct: 746 LTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSERNGCLVGATQVFEGDEIMLISNQGTL 805

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +    D++    R  +GVRL   K+G
Sbjct: 806 VRTRADEVSLSGRNTQGVRLIRVKEG 831


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/752 (36%), Positives = 450/752 (59%), Gaps = 25/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 4   MFEEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAAAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G+  D  S AA R
Sbjct: 64  HKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSADDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+ + AE++L  + +  VD+   ++    EP + P++ PNLL NGT+GIAVGMAT 
Sbjct: 124 YTEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A + ++D+P+ ++E+L EYI GPDFP+GG IV SR  + + Y  GRG  
Sbjct: 184 IPPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSV 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA++  E        IVVTE+P+QV  +R++E+IA+ + AK++P++ D+RDES  +  
Sbjct: 244 KMRAKYTKEGQD-----IVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L+EWL  R
Sbjct: 299 TRLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLTFR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            + + RR  +R+Q +  R+ IL+GLL+A+LNIDE+IAIIR+EDKPKPV++ RF L++ Q 
Sbjct: 359 TQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPVLMERFGLSDVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L+ +LR L +LEE +I++E D L  E++K++ +L S  +    +  E+++  E F  
Sbjct: 419 EYVLDTKLRQLARLEEMKIRAEQDELEKERKKLEDILGSEAKLRKLVKTELKQDMETFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E     +A  +  +I  EP+TVV+S +GW+R+ K H +D   L +K G
Sbjct: 479 E-----RRSPIVERKE-AQAFSETDLIASEPVTVVLSEKGWVRAAKGHDIDAQGLSYKAG 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A    +    + L   G++Y + A +L S RG GE +   ++           + 
Sbjct: 533 DKFLAAAKGRSHQNAIFLDDTGRSYCVAAHSLPSARGQGEPLTGRVNPPSGAGFTHVLMG 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVG 665
             + K+++ S  G  F+    ++ +  R GK  + +     +   + +      H+  + 
Sbjct: 593 PDSMKVVLASDAGYGFVARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVAIS 652

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRS 718
              ++L+F + ++PE+++GKG ++          ++  +S++      + L  + +  R 
Sbjct: 653 NEGRMLVFPVSELPELAKGKGNKIIGIPSARAQAREEVMSNLAVVGEKDTL-VLHAGKRF 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              + +DL  +LG+RG  G  +P+G  R  + 
Sbjct: 712 LKLTFDDLSHYLGERGRRGHKLPRGLQRVDRV 743


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVC 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVESDDKEDVAE 821


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 403/767 (52%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M  +G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY ++ GQGN+G++DGDSAAA RY
Sbjct: 62  YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ ++ E ++Q +D++ VD ++ +++   EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTGG  +     + E+Y  GRG   
Sbjct: 182 PTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGG-YIYGMSGVREAYLTGRGRVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E        IV+TEIPY V K+ LI+ IA+L   K+I  + +  DES  +   
Sbjct: 241 MRARAEIETSST-HDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+++ L  ++K ++ HR EV
Sbjct: 300 IVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALV-HGRPRLLNLKDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q 
Sbjct: 359 VIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMERFQLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++      + +L++ +     I  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEILSNDELCRKVITDELIEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             + ++  +L  +  G        +     + G   + +  ++++
Sbjct: 591 DDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRV 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    GD  + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 711 PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 673

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 674 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT D  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 794 VRLINLE 800


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/776 (31%), Positives = 396/776 (51%), Gaps = 39/776 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++N   + +   ++ V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + 
Sbjct: 25  VNNGPEIPQHGRIEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDG 84

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     ++ K AR+VG+V+   HPHGD ++YD++VRL+QP+  RYPLI GQGNFG+   D
Sbjct: 85  GYRPDRSYNKCARVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDD 144

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE RM  +A  +++ + ED VDF   Y+    +P V P++FPNLL NG++GIA
Sbjct: 145 GPAAPRYTECRMQPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIA 204

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT IP HN++E+ E    L+DNPE + E+    LL+ I GPDFPTG +I+  R  I 
Sbjct: 205 VGMATQIPPHNLREVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIM-GRSGIE 263

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + D
Sbjct: 264 DAYRTGRGSITMRAVVEVEEI-QGRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIAD 322

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ +P++ 
Sbjct: 323 LRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPINA 381

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
            ++ W+ H+ EV+ RR+ +R++  + ++ IL+GLL A   +DE+IA+IR        +  
Sbjct: 382 FVRHWVDHQVEVIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDG 441

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q  AIL+++LR L  LE  +I  E D L A  E ++ +L +  +Q   I+
Sbjct: 442 LMDLLDIDEVQARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDILATPARQRTIIS 501

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+  + E +        RRT   E+  +D     + +I  E + V I+  G+       
Sbjct: 502 EELAAIVEQYGDE-----RRT---EIVPSDAEVNMEDLIPDENVVVTITRGGYAKRIRVD 553

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
             RS +     +     +  D +       T   +L  +  G+ Y   A  L  G     
Sbjct: 554 AYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRARAWELPEGSRDSK 613

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  ++    ++ I        Y +   L++ +  G       +E  +    G   + 
Sbjct: 614 GQHVANIMAFGPDEKIAQVLTIKDYQAAPYLVLATKNGLVKKTRLTEYDSPRSGGLIAVN 673

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYK--DGGI 697
           +   +++     V+  D + +V    + L F+   DQI  M R   GV    ++  D  +
Sbjct: 674 LREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPMGRATSGVTGMRFRGDDELL 733

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     E             +        +  RGG+G  V K   + G  + +
Sbjct: 734 AMRVVPSDAEDAEVFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKASDKGGDLVGA 789



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 17/187 (9%)

Query: 519 PITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++  +    D      L A++ +EGD L  A      D IL++S  G++
Sbjct: 642 PYLVLATKNGLVKKTRLTEYDSPRSGGLIAVNLREGDELVGAELVSDADDILMVSRKGQS 701

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVE 627
               A +    R  G A   +  +    + +++   V        ++ VV   G A    
Sbjct: 702 LRFTASD-DQIRPMGRATSGVTGMRFRGDDELLAMRVVPSDAEDAEVFVVFQSGMAKRTA 760

Query: 628 ESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R G             + +  +V    D V VV  + K++   +D++    R
Sbjct: 761 VDQYRVQGRGGLGVKVAKASDKGGDLVGALVVGQQDEVMVVMSSGKVVRSRVDEVRMTGR 820

Query: 684 -GKGVRL 689
              GVR 
Sbjct: 821 DTSGVRF 827


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/771 (31%), Positives = 393/771 (50%), Gaps = 38/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T   + ++ V L+  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G   
Sbjct: 2   TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             ++ K AR+VGEV+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA
Sbjct: 62  DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +A  +L  +DE+ VDF+  Y+ ++ EP+V P + PNLL NG++GIAVGMA
Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYR 244
           T++P HN++E+ +A   ++D+PE   E+     +E + GPDFPT G+IV  RE I E+YR
Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIV-GREGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA   VEE  RG   +VVTE+PYQV    L E IAE +   R+  + +I DE
Sbjct: 241 TGRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADE 300

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    R ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ 
Sbjct: 301 SSDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDG-VPRTLRLDELVRY 359

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           ++ H+ EV+ RR+ +R++  + R  IL+GL  A   +D +IA+IR+             L
Sbjct: 360 YVLHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLMDL 419

Query: 424 ---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
               E Q  AIL+++LR L  LE  +I  EL  L      + ++L+S ++Q   I  E+ 
Sbjct: 420 LDIDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAILDSPERQRQIIRDELA 479

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+ E +        RRT F      D     + +I +E + V I+  G+         RS
Sbjct: 480 EIVEKYGD-----DRRTKFV---ANDGDVSMEDLIAEEEVVVTITRTGYAKRTKSDLYRS 531

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
            +     +     K+ D +       T D IL  +  G+ Y   A  L        G  +
Sbjct: 532 QRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAHV 591

Query: 591 QLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             ++    ++ I              L++ ++ G       ++  +    G   + +   
Sbjct: 592 ANILAFQPDEKIAQVMQIKDYGVAPYLVLATANGQVKKTRLTDFDSPRSGGVIAINLRES 651

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSY-KDGGISDVIC 702
           +++     +  D  + +V      + F  D   +  M R   GVR  +   D  +  +I 
Sbjct: 652 DELVGAALIDPDQDLLLVTRKAMSIRFKADDATLRPMGRATEGVRGIALSPDDSLLSMIV 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + EG+  + +  R + +           RGG G L      R G  + +
Sbjct: 712 --VEEGVDVLVATERGFAKRTGIENYPAQGRGGKGVLTADPKSRKGNLVGA 760



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 15/198 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++  +    D      + A++ +E D L  A        +LL++    +
Sbjct: 616 PYLVLATANGQVKKTRLTDFDSPRSGGVIAINLRESDELVGAALIDPDQDLLLVTRKAMS 675

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A + +  I L+ +  +++  V +    +LV + +G A       
Sbjct: 676 IRFKADD-ATLRPMGRATEGVRGIALSPDDSLLSMIVVEEGVDVLVATERGFAKRTGIEN 734

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIP-EMSRGK 685
             A  R GK  L    + +   +   + V  GD +  +     ++   ++ +     R  
Sbjct: 735 YPAQGRGGKGVLTADPKSRKGNLVGALSVRLGDELYAITSGGGVIRTPVNGVRHNKDRAT 794

Query: 686 -GVRLQSYKDGGISDVIC 702
            GV+L +  +      I 
Sbjct: 795 MGVKLMNLPEDVSIVAIA 812


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/818 (32%), Positives = 414/818 (50%), Gaps = 89/818 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  + +  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAAL-INGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVAL-DHGQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AATGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I +
Sbjct: 484 IGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ LN N+ I        Y+    +++ ++ G   
Sbjct: 596 GRLYWLKVYQLPQASRGSRGRPIVNILPLNENERITAILPVTAYEEDKFVVMATAGGIVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +  +E       G   L +  E+++  V    G + + +     +++ FS   +  M R
Sbjct: 656 KIALTEFSRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAMGR 715

Query: 684 -GKGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSA 715
              GVR                               D  I  V+   I +     + + 
Sbjct: 716 LATGVRGIKLALTNDLNDDESAGEIEEVSDDNTEETLDLNIDKVVSLVIPKNDGEILTAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+GK +++
Sbjct: 776 QNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 38/227 (16%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L     E++   V+ +  G ++ +      +  S  + AL+ ++ D L     
Sbjct: 627 NERITAILPVTAYEEDKFVVMATAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDI 686

Query: 557 AHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------- 600
               + I+L S+ G+        + A   L+    G  + L  DLN ++           
Sbjct: 687 TDGNNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAGEIEEVSDD 746

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  +  +  ++L  +  G     +  E    +R  K  + +   E+
Sbjct: 747 NTEETLDLNIDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSER 806

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
              VV     V  D + ++ +   L+   + ++  + R  +GVRL  
Sbjct: 807 NGKVVAATQVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIR 853


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 405/768 (52%), Gaps = 39/768 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +  + +   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+EMG  +    
Sbjct: 4   IEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQPT 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VGEV+ K HPHGD +VY +LVRLAQP+  RY L+ GQGNFG++DGDS AA RYT
Sbjct: 64  RKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++A  +L+ +D++ VDF++ +++   EP V P++FPNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEI-SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN++E  +  +A ID      +  L+ YI  PDFPTGG  +     + E++  GRG   
Sbjct: 184 PHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGG-FIYGYAGVKEAFETGRGRIV 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310
           +RAR  +E    G   I+VTEIPYQV K++L+  IA+L+  +RI  + +I DES+ +   
Sbjct: 243 LRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +  +++  +F L+ +++ F +N   L  G  P ++ L  ++ E++ HR +
Sbjct: 303 RIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKG-RPCLLNLKQLIGEFVDHRHD 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RRS F ++    R  IL+GLLIA  NIDE+I IIR   N  + +  +  RF L+E Q
Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRERFELSELQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  ++++E D L+   + ++ LL         +  E+ EVKE F 
Sbjct: 422 ARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDELLEVKEKFG 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+  + +    +     + + + IS+ G+I+              V 
Sbjct: 482 DP-----RRT---EIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGVG 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 +E D ++    A     +LL +T G+ + LP   +  G     G AIQ ++++ 
Sbjct: 534 SKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNILNIE 593

Query: 598 HNQDIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  I              + ++  L+  + +G               KG   +K++  +
Sbjct: 594 ADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEAYSNPRSKGVFAIKLNEGD 653

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF--- 703
            +  V    G   + +  +  + + F   ++  M R   GVR     +GG   ++     
Sbjct: 654 SVVSVRLTNGKTEILLANKGGRAIRFPESKVRSMGRVTTGVRGMILDEGGEDAIVGMVAL 713

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           K  E  T +  +   Y +        +  RGG G    +   ++G  +
Sbjct: 714 KDPEKETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKTGSLV 761



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 14/185 (7%)

Query: 522 VVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + +G I+           S  + A+   EGDS+      +    ILL +  G+A   
Sbjct: 620 VFATLQGMIKKTPLEAYSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRF 679

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFVYDSTCK--LLVVSSKGNAFIVEESEII 632
           P   + S       ++ +I     +D IV         K  +LVVS  G           
Sbjct: 680 PESKVRSMGRVTTGVRGMILDEGGEDAIVGMVALKDPEKETILVVSECGYGKRTTLDSYR 739

Query: 633 ANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    +   EK   +     VT +  + ++  +   +   +  I  + R   GV
Sbjct: 740 ITNRGGKGVKTMQITEKTGSLVDFRSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGV 799

Query: 688 RLQSY 692
           +L + 
Sbjct: 800 KLINL 804


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G     L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPAVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  M R   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMGRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++      + R  G     +  ++L     +V A V   
Sbjct: 656 NVFLTDGAADVIIGTKFG--YSVRFNE-TAVRSMGRIATGVRGVNLRDGDQVVGAGVIAE 712

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
             ++LV++ KG       SE     R GK      +   +     L+     + + ++  
Sbjct: 713 GDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITN 772

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 773 TGVIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/796 (31%), Positives = 407/796 (51%), Gaps = 63/796 (7%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +   +    VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  +F  
Sbjct: 2   SQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM++++  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMSKISHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            P HN+ E+    LAL+  PE SI++L+E+I GPDFPT GI +     + + YR GRG  
Sbjct: 182 FPPHNLTEVINGLLALLQKPETSIDELMEFIPGPDFPTSGI-IHGISGVRDGYRTGRGRV 240

Query: 251 RVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +R +  VE + RG    I+V E+PYQV K   IEKIAEL+  K+I  + D+RDES +  
Sbjct: 241 VMRGKTHVESLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +   P++++ +++  + ++  F +NM  L  G+ P+++ L  IL  +L HRR
Sbjct: 301 MRVVIELKKGEIPEVILNNLYKQTQLQDNFGMNMVALIDGQ-PRLLNLREILDAFLKHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420
           EV+ RR+ + ++    R  IL+GL +A  N+DE+I II++   P   K  ++ R      
Sbjct: 360 EVITRRTVYELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDV 419

Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L++ Q   IL LRL+ L  LE+ +I +E  
Sbjct: 420 VSSMLKKSSQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYH 479

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            ++     +  +LN  ++  + I+ E+ E++  +        RR+   E+         +
Sbjct: 480 AIMVTIIDLLDILNKSERVTSIISEELTEIRSQYGD-----DRRS---EIVTDAYDLSIE 531

Query: 513 AMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  + + V +SN G+I+        + K       A+  KE D ++    A++ D IL
Sbjct: 532 DLIAPQDMVVTLSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNIL 591

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    +  G     G+ I  L  L   + I        +     + + ++
Sbjct: 592 CFSSRGQVYWLKVYEVPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFVDDEYIFMATA 651

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           KG       S+     + G   +K+++ + +       G+  + ++    K + F    +
Sbjct: 652 KGTVKKTPLSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDV 711

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             M R   GVR     D      +        + + +    Y +           RG  G
Sbjct: 712 RSMGRNAAGVRGMKLPDTEQVLSLLIASSNEESVLVATENGYGKRTVLSEFRKSGRGTQG 771

Query: 738 SLVPKGFPRSGKFLSS 753
               +   R+G  +++
Sbjct: 772 VKAIQVSDRNGIVVAA 787



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +    + + +G ++              + A+    GD L  A   +    I+L+S+ G
Sbjct: 642 DDEYIFMATAKGTVKKTPLSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGG 701

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           KA      ++ S   +   ++ +   +  Q +       +   +LV +  G       SE
Sbjct: 702 KAVWFDEHDVRSMGRNAAGVRGMKLPDTEQVLSLLIASSNEESVLVATENGYGKRTVLSE 761

Query: 631 IIANTR--KGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R  +G   ++VS    + +  K+ GDH  + ++     L+   + +I E+ R   
Sbjct: 762 FRKSGRGTQGVKAIQVSDRNGIVVAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQ 821

Query: 686 GVRLQSYKDG 695
           GV L +  DG
Sbjct: 822 GVTLINLSDG 831



 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           +RS+  ++  +  +   + + +   L A + +  +L++T+   GK   L      SGRG 
Sbjct: 711 VRSMGRNAAGVRGMKLPDTEQVLSLLIASSNEESVLVATENGYGKRTVLSEFR-KSGRGT 769

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
            + ++ +   + N  +V A +     +++++++ G       SEI    R   G T + +
Sbjct: 770 -QGVKAIQVSDRNGIVVAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINL 828

Query: 645 SSEEKMKLVVK-VTGDHV 661
           S  EK+  + K V  DH+
Sbjct: 829 SDGEKLSGIEKIVESDHI 846


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 405/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +ID+      E SI+ +L+ + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLKHYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  +++RF LTE 
Sbjct: 365 EVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMARFDLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E + L+ +  ++ ++L   K     I  EI  + E +
Sbjct: 425 QASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAILADRKLLLGVIKKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I +E + + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEFDISMEDLIPRENVVITMTKMGYIKRMSMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D +K      T   I+  +  G+ Y L    +   S    G AI  L+ L
Sbjct: 537 GIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    LL+ + KG        +     + G   + +  ++K+  V
Sbjct: 597 MPDEKITAMIPIREYEDGQYLLMATEKGLVKKTPIKDYANVRKTGLAAIVLREDDKLIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
                +  V +V +    + FS   +    R   GVR  +   G   +VI  +I + G  
Sbjct: 657 KITDDEQDVILVTKYGMCIRFSEKDVRPTGRVSMGVRGMNL--GDHDEVIGMQISDQGKY 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++ +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITEKTGDVVG 756


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 399/786 (50%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT G  +  R+ I  +Y  GRG  +VRAR  V
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-FIHGRDGIRAAYEKGRGTIQVRARTVV 265

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   +     IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 266 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + M  +  G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDAMAQVVLNNLYAHTQMQMGFGVIMLAI-DGGQPRILTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+     D  +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 500 RRT---EIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 616

Query: 605 AFVYD------------------------------STCKLLVVSSKGNAFIVEESEIIAN 634
                                              +   + +V+ KG        +    
Sbjct: 617 ILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVTRKGLIKKTRLEQFARP 676

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++          H+ +       + F    +  M R   GV+  + 
Sbjct: 677 RAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 736

Query: 693 KDGGIS-----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           + G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 737 EAGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 796

Query: 748 GKFLSS 753
           G  +++
Sbjct: 797 GPVVAA 802



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 22/215 (10%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             +++ +G I+        +  +  + AL  +EGD L  A        ILL +  G A  
Sbjct: 656 VFMVTRKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIR 715

Query: 575 LPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIV 626
               ++   R  G     +  I L    ++V                +L V++ G     
Sbjct: 716 FEESDV---RPMGRTAYGVKGITLEAGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRT 772

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMS 682
           E +E    TR GK  + + + E+   VV        + V ++     L+      I  + 
Sbjct: 773 ELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIG 832

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           R  +GVRL + +      V   ++ E     + AG
Sbjct: 833 RNTQGVRLITLESKEEQVVGVARVAETTPEAEEAG 867


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/762 (32%), Positives = 404/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E SIE +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+P+ V K+RLIEKIAEL+  K++  + D+ D+S+ + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLKYYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR      + K  ++SRF L+E 
Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ + E+  ++L   K     I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T       D     + +I +E + + ++N G+I+               
Sbjct: 485 ------GDERRTHIGYDEFD--ISMEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +        G A+  L+ L
Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG        + +   + G   + +  ++ +  V
Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V +  + + F+   +    R   GVR  +  D    ++I  ++  +G  
Sbjct: 657 KVTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGMNLSDN--DEIIGMQMSSQGKD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 MLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVG 756



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 12/212 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 AT+     E      + + +G ++              L+A+  +E D L    
Sbjct: 598 PDEKITATIPIKEYEDGKYLFMATKKGLVKKTPIQDYMNVRKTGLAAISLREDDLLIEVK 657

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  ILL++  G+       ++ S       ++ + +L+ N +I+   +      +L
Sbjct: 658 VTDNAQDILLVTKYGQCIRFNEKDVRSTGRVSMGVRGM-NLSDNDEIIGMQMSSQGKDML 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLL 671
           +VS KG        E     R GK        EK   VV          + ++     ++
Sbjct: 717 IVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITEKTGNVVGMKAVDEESEIMIINTEGIVI 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I +  R   GV+L +  +      + 
Sbjct: 777 RMKCSDISQYGRITSGVKLINLPEKERVASVA 808


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+ +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VIRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVESDDKEDVAE 821


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 411/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/814 (31%), Positives = 408/814 (50%), Gaps = 82/814 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NP+++I +L++YI GPDFPT  I +  ++ I ++Y+ GRG  
Sbjct: 182 IPPHNLTEVINGCLALIVNPDLTITELMDYIPGPDFPTAAI-INGKKGIEQAYQTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L   + P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQ-PKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGN 419

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ ++E Q  AIL+LRL  L  LE  +I SE 
Sbjct: 420 VKAMLEKAGEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL    ++  +L S ++    I  E+ E+K  +        RRT   E++ A      
Sbjct: 480 QTLLDLIAELLHILASPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISL 531

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 532 EDLITEENVVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTI 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  ST G+ Y L    L   S    G+ I  L+ L  ++ I        Y+    + + +
Sbjct: 592 LCFSTAGRLYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYEEDKYIFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G       +        G   + ++  + +  V    G + + +  +  K++ F   +
Sbjct: 652 AFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAE 711

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     D      +     +G   +      Y
Sbjct: 712 ESAVVDENGNPEIRFKGVRPMGRTATGVRGIKMTDEQRVVSLIVPKTDGA-ILTVTENGY 770

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G  + +
Sbjct: 771 GKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGA 804



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 29/241 (12%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      A L     E++    + +  G ++     +          A++  EGDSL   
Sbjct: 627 EADERITAILPVREYEEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN--------------LLSGRGHGEAIQLL--IDLNH 598
                T+ I+L +  GK                          R  G     +  I +  
Sbjct: 687 DITDGTNEIMLFTDAGKVVRFKEAEESAVVDENGNPEIRFKGVRPMGRTATGVRGIKMTD 746

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVV 654
            Q +V+  V  +   +L V+  G     +  +  + +R   G   +KVS      +  V 
Sbjct: 747 EQRVVSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQ 806

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
               D + ++     L+   ++++  + R  +GV L    D     V+  +  E +   +
Sbjct: 807 VDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDE--EQVVGLQRIEEIEVTE 864

Query: 714 S 714
           S
Sbjct: 865 S 865


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/748 (34%), Positives = 404/748 (54%), Gaps = 31/748 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSARIVG+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVYD+ VRLAQ F  RY L+ G GNFG+IDGDSAAA RYTE RM ++ + +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E   EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C     
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP++++++L+  I GPDFPTG +I+  RE I ++Y  GRG  ++RAR  +EE+ +G 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPYQV K+R+IE IA L   K I  +  +RDES      ++      + PD++
Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++  F + M  L  G  P+V+ L  +L  +L HR +V+ RR+ F +   + 
Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GLLIA  +IDE+IA IR+       +  ++ +F L+E Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+ E   LLA  E + ++L +  +Q   I  E+ ++K+ +        RR+   E+
Sbjct: 419 EREKIEEEYKELLALIEDLKAILANEARQRQIIKDELDDMKKKYGDP-----RRS---EI 470

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIA 554
           +        + +I  E + + ++ +G+I+        +       +  +  KE D +   
Sbjct: 471 TIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
           +H  T + +L  ++ G+AY L A  +    S    G A+  ++ L   + + T    +  
Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN- 667
                L +V+  G        E     R G   + +   +++  V   TG+   ++G   
Sbjct: 591 HEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKL 650

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS--DVICFKICEGLTWIDSAGRSYNRSEN 724
              + FS   +  M R   GVR      G +     +             +   + +  +
Sbjct: 651 GIAIRFSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNTDESEAQVFTISEEGFGKRND 710

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L KRGG GS   K   ++G  ++
Sbjct: 711 AEAYTLQKRGGKGSKNFKITNKTGDVVA 738



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 18/233 (7%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              +G   TT  ++ R  +       +  E   V  +     R+++     L+A++  EG
Sbjct: 574 PLAVGESVTTMIDLERVHEDVNL--FMVTEFGVVKRTAIEEYRNIRRS--GLNAINLDEG 629

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L           IL+ +  G A      ++   +     ++  I LN    +V A V 
Sbjct: 630 DRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRG-IKLNAGDVVVGAGVL 688

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHV 661
              +S  ++  +S +G     +        R GK      +   + + + + V    D V
Sbjct: 689 NTDESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEV 748

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGISDVICFKICEGLTW 711
            ++ E  K++ F+++ I  + +GK   GV+ Q+  +G    V    +  G   
Sbjct: 749 MLISEQGKIIRFNMNDI-AVKKGKAISGVKTQNLDEG--DKVASIAVIPGAEI 798


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/765 (31%), Positives = 403/765 (52%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   +++ Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +K
Sbjct: 4   QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++ E ++Q + ++ VDF + +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A IDN +I ++ L+ YI  PDFPTGG  +     + ++Y  GRG   +R
Sbjct: 184 HNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGG-YIYGISGVRDAYETGRGRVVMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E        I+V EIPY V K  LIE IA L+  K+I  +  + DES  +   ++
Sbjct: 243 AKTEIESHPT-HDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++  +F ++ ++T F +N   L     P+++ L  +++ ++ HR EV+ 
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALV-HGRPKLLNLKDLIRLFVEHRHEVVI 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF LTE Q  A
Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDRFQLTEVQSRA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RLR L  L + Q+ +E + L+ +    + +L + +     I  E+ EVKE +    
Sbjct: 421 IVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEILTNEELCKKVIKDELIEVKEKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
              +RR+   E+  A +    +     + + + IS+ G+I+              V    
Sbjct: 479 ---QRRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQHRGGVGSKG 532

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ + 
Sbjct: 533 SETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGNKTSKGRAIQNLLNIDSDD 592

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +             + ++  +L  +  G        +     + G   + +  ++++  
Sbjct: 593 VVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIE 652

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKICE 707
           V    G + + +   N + + F    + EM R   GVR  +  + G  +V   IC K  +
Sbjct: 653 VRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGTDEVIGMICIKNPQ 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  +   Y +  +        RGG G        ++GK ++
Sbjct: 713 EETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITEKTGKLVA 757



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 614 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI 631
                +         ++ +       D V   +         ++V+S  G     +  + 
Sbjct: 674 FHESAVREMGRTATGVRGITLDEDGTDEVIGMICIKNPQEETIMVISENGYGKRSDIEDY 733

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    +S  EK   +  +  VT +  + ++ ++   +   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTLSITEKTGKLVAIKSVTDENDLMIINKSGITIRLHVASVRIMGRATQG 793

Query: 687 VRLQSYK 693
           VRL   +
Sbjct: 794 VRLIDLE 800


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/825 (32%), Positives = 400/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  ++++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   +VVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME  F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY----------------------KDGGISDVI---------CFKICEG--- 708
              GVR                          +   + DV+           ++ +    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGVEEEIEADDVDDVVETTDGAEAAVIEVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    + +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 77/267 (28%), Gaps = 50/267 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGVEEEIEADDVDDVVETTDGAEAAVIEVADDGNVAYILTATENGFGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVIC---FKICEGLTWIDSA 715
              G     +      + E    +D A
Sbjct: 861 LSKGEKLQAVERLDASLDEVEDVVDEA 887


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/772 (30%), Positives = 405/772 (52%), Gaps = 36/772 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+       N+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G
Sbjct: 1   MSDQPISGGTNIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +  A+KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYP++ GQGNFG++DGDS
Sbjct: 61  VHYNKAYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAV
Sbjct: 121 PAAMRYTEARLKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+ +  +A IDN +I+I +L+ ++ GPDFPTG   +   + I  ++  
Sbjct: 181 GMATNMAPHNITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGA-TIYGYQGIRSAFET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+R  +E    G   I+V+EIPY V K+ +IEKIA ++  K+I  + DIRDES
Sbjct: 240 GRGRIVLRSRSTIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++F   R    ++++ ++F  S +++ F +N   L  G  P  + L  ++  ++
Sbjct: 300 DREGMRIVFDLKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKG-RPMTLNLKEMIMYFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---S 422
            HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR    P+   +       
Sbjct: 359 EHRHEVVTRRTQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMTNFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q  A+L+LRL+ L  +E  +I  E + ++A   ++  +L S + +   I  E+ E+
Sbjct: 419 MSEIQAKAVLDLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKELRMEIIKQELDEM 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE +        RR+     S        + MI +E + + IS+ G+I+           
Sbjct: 479 KERYGDK-----RRSDIVHASD---DINIEDMIPEEQMVITISHEGYIKRTALSEYRTQG 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V       KE D  +    A T + +L  +  GK + L    +  G     G AIQ 
Sbjct: 531 RGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTTKGRAIQN 590

Query: 593 LIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +I +     + T           Y +   L++ + +G                G   + +
Sbjct: 591 VIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGINAITI 650

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDV 700
              +++  V   +G D + +   + + + F+  ++  M R   GV+  +       +  +
Sbjct: 651 HEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPMGRTAAGVKGVTLAHDKDVVVGL 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +  T +  + + Y +  +     +  RGG G        ++G  +S
Sbjct: 711 VAVSSPDT-TLLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGDLVS 761



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 16/226 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDR 562
           TL           V+ + +G I+        +  S  ++A+   EGD L        +D 
Sbjct: 608 TLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGINAITIHEGDRLLDVKMTSGSDE 667

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSK 620
           +++    G+A       +         ++  + L H++D+V   V        LLVVS K
Sbjct: 668 LVIALRSGRAIRFNESKVRPMGRTAAGVKG-VTLAHDKDVVVGLVAVSSPDTTLLVVSEK 726

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     +  +     R GK    ++  E    +  ++ V     + ++ ++   +  ++ 
Sbjct: 727 GYGKRSDIEDYRVTNRGGKGVKTLNISEKTGDLVSILGVNDQYQIMIINKSGITIRMAVS 786

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
            +  M R   GVRL   +DG    +      E    ID  G    +
Sbjct: 787 DLRVMGRATQGVRLIKIQDG--DSIASVAKFEFTDIIDEEGGELAK 830


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 400/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+ +  + +IDN      + S+E++L+ I GPDFPTG  I+ +   I E+YR GRG 
Sbjct: 187 NLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTH-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D S  + 
Sbjct: 246 IRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +  + ++++  ++  + ++  F + M  L   + P++M L  +LK +LAH+ 
Sbjct: 306 MRICIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQ-PKIMNLLEMLKHYLAHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
           EV+ RR+ + +     R  IL+GLL A  NIDE+I IIR    P   K  ++ RF LTE 
Sbjct: 365 EVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMERFGLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +  K  ++L         +  EI  + E +
Sbjct: 425 QAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAILADRNLLLRVVREEILLISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   ++   +     + +I K+   + ++  G+I+               
Sbjct: 485 GD-----DRRT---QIGFDEFDISMEDLIPKQNTVITMTKLGYIKRMTVDNFRSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++  L   T   ++  +  GK Y L A  +        G AI  L+ L
Sbjct: 537 GIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        ++    L++V+ KG        +     + G   + +  E+++  V
Sbjct: 597 APGEKITAVIPLNKFEEGKYLMMVTKKGLVKRTPILDYEHVRKTGLAAIVLRDEDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLT 710
                  H+ +V +    + F  + +    R   GVR  +  D    +V+  ++  +G  
Sbjct: 657 KYTDNKKHIILVTKEGMCIRFKENDVRSTGRVSMGVRGMNLSDS--DEVVGMQLDTQGDC 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLFVSEKGMGKRTSISEFTCQNRGGKGVKCYKITEKTGNVIG 756


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/784 (32%), Positives = 403/784 (51%), Gaps = 57/784 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    VSL   + + YL YA+S I  RA+PD RDG KPVHRR++ AM EM  D+   +KK
Sbjct: 6   KETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  ++++ VDF   Y+E++ EP+V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LAL+D+PE   E L   +  PDFPT G  +  R   +E+YR GRG   +RA
Sbjct: 186 NLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAG-FIHGRAGSIEAYRTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   E   +     I+VTE+PYQV K++LIE+IAE++  KR+  + D+RDES +    + 
Sbjct: 245 RCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMRIA 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + D+++ +++  + M++ F +NM  L  G  P+ + L  +L+ ++ HRREV+ 
Sbjct: 305 IELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGA-PRTLGLRDLLQAFIQHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---------------------- 411
           RR+ F ++    R  IL+GL +A +N+D +I++IR                         
Sbjct: 364 RRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAAL 423

Query: 412 -----KPKPVMVSR-FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                +P   M +  + L+E Q  AIL+LRL  L  LE+ +I+ E   LL    ++  +L
Sbjct: 424 LVERGEPSEGMHADGYHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    I  E+  +++ +  +     RR+   E+         + +I +E + V  +
Sbjct: 484 GSKTRLMEVIREELVAIRDQYGDA-----RRS---EIVADTGDISTEDLITEEEMVVTFT 535

Query: 526 NRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+        + +       A   KE D ++    A T    L  S  GK +    
Sbjct: 536 HAGYIKAQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKV 595

Query: 578 GNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L  +GRG  G+ I  ++ L   + I        +     + +V+S G        E  
Sbjct: 596 YQLPQAGRGAKGKPIVNMLSLAPTERITAVLPVRDFTEGQFVCMVTSLGVVKKTPVMEYS 655

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
               +G   + +   +++  V    G     +   +   + F   ++  M R  +GVR  
Sbjct: 656 RPRSQGINAINLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAMGRNARGVRGI 715

Query: 691 SYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           S ++     VI  +  +    I  +    Y +           RGG G +  +   R+G 
Sbjct: 716 SLEEN--DRVISAQWVDSSQVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERNGD 773

Query: 750 FLSS 753
            + +
Sbjct: 774 VVGA 777



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L      +     ++++ G ++              ++A++   GD L     +
Sbjct: 620 ERITAVLPVRDFTEGQFVCMVTSLGVVKKTPVMEYSRPRSQGINAINLDPGDRLVAVGLS 679

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                 +L +  G A   P   + +   +   ++  I L  N  +++A   DS+  +L  
Sbjct: 680 DGQREFMLFTRHGMAVRFPEAKVRAMGRNARGVRG-ISLEENDRVISAQWVDSSQVILTT 738

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           ++ G   + +  E     R GK  + +     + + +  +     D + +V ++  L+  
Sbjct: 739 TANGYGKLTKVDEYRRTNRGGKGVIAIQTNERNGDVVGALAVTERDELMLVSDHGTLIRI 798

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
           +++ I    R  +GVRL +  +G  ++ +      +
Sbjct: 799 AVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD 834


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 442/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 -DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +  R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/776 (30%), Positives = 396/776 (51%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D    + T   + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPV RRI++A  
Sbjct: 2   TDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYASY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     ++ KSA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+  
Sbjct: 62  DAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTEAR+T +A  +L+G+D++ VDF   Y+ +  EP V P++ PNLL NG+ G
Sbjct: 122 NDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++EI EA    ++N +     ++E  +E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGG-QG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R    VEE  +G+  +V+TE+PYQV    L+  IAE +   +I  +
Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             I D+ S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + L
Sbjct: 301 SKIEDQSSDRVGMRIVVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
           D +++ ++AH+ +V+ RR+ F ++  + R  IL+GL+ A   +DE+IA+IR        +
Sbjct: 360 DQMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIAR 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q +AIL+++LR L  LE  +I  EL  +  E   +  +L+  ++Q   
Sbjct: 420 TGLMELLDVDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDILDKPERQRAI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E F        RRT       AD     + +I +E + V I+  G+     
Sbjct: 480 VRDELGEIVEKFGD-----DRRTKII---AADGDVTDEDLIAREDVVVTITETGYAKRTK 531

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S  
Sbjct: 532 TDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQSRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        YD    L++ +  G        +  +N   G   
Sbjct: 592 ARGQHVANLLAFQPEERIAQVIQIKGYDDAPYLVLATKNGLVKKSRLEDFDSNRSGGIVA 651

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++     V + D + +V +N + + FS     +  M R   GV+   + +G  
Sbjct: 652 INLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPMGRATSGVQGMRF-NGDD 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + E    + +    Y +        +  RGG G L  +  P+ G  + +
Sbjct: 711 QLLALNVVQEDTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDPKRGDLVGA 766



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 14/233 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 604 QPEERIAQVIQIKGYDDAPYLVLATKNGLVKKSRLEDFDSNRSGGIVAINLRDEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
               + D +LL+S + ++    A +  + R  G A   +  +  N +  ++   V     
Sbjct: 664 ALVSSEDDLLLVSKNAQSIRFSATD-EALRPMGRATSGVQGMRFNGDDQLLALNVVQEDT 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENR 668
            LLV +S G A      +     R GK  L +       + +  ++      +  +    
Sbjct: 723 YLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDPKRGDLVGALIVNDETELYAITSGG 782

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++  +  Q+ +  R  KGVRL +  +G     I     E     D   ++  
Sbjct: 783 GVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLAIARNADETDETSDETEQATT 835


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKGNQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKGNQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/751 (36%), Positives = 444/751 (59%), Gaps = 27/751 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GLD  +  KK
Sbjct: 9   EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ +E++L  + +  VD+   ++    EP V P++ PN+L NGT+GIAVGMAT +P 
Sbjct: 129 ARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+D P+ ++E+L E+I GPD+PT   IV  R  I++ Y  G+G  R+R
Sbjct: 189 HNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYETGKGSIRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A + VE+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDES  +   RI
Sbjct: 249 AVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D   LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +L EWL  R   
Sbjct: 304 VIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLLEWLEFRIGT 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR   R+  +++R+ +L GLL A+LN+DE+I IIR E+ PK  +++RF LTE Q D I
Sbjct: 364 VRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFDLTEIQADYI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L  RLR L +LEE +I+ E D LL E++++ +LL S  +    +  E+ E  E +     
Sbjct: 424 LETRLRQLARLEEMKIRGEQDELLKEQKRLTTLLGSDAKLRKLVRSELLEDAETYGD--- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  ++  EP+TVV+S +GW+R  K H +D + L +K GD  
Sbjct: 481 --DRRSPIVERAE-AKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGF 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K A    +    +L+ + G++Y+L A +L S RG GE +   +            + +  
Sbjct: 538 KAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATFECVLLPEDE 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
              +V S  G  F+V+  ++ A  + GK  L + +  K+     V     D +A V    
Sbjct: 598 ALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG-RSYN 720
           +LL+F +  +P++ +GKG ++          ++  ++D+    I EG T +  AG R+ +
Sbjct: 658 RLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--ISEGSTLVLQAGKRTLS 715

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +DL  + G+RG  GS +P+GF R    +
Sbjct: 716 LKPDDLEHYKGERGRRGSKLPRGFQRVDSLM 746


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLRDGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/823 (32%), Positives = 409/823 (49%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS--------- 422
           R+ F ++    R  IL+GL IA  NID +I +IR     D+ +  +++R           
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILTSPERLMEVIREELERVKAEFGDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+  Q+ 
Sbjct: 656 GTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVR 715

Query: 680 EMSR-GKGVRLQSYKDGGISD---------------------------VICFKICEGL-T 710
            M R   GVR        ISD                           V+   I      
Sbjct: 716 GMGRVATGVRGIKLATTEISDEVEDVEIETVENEDAEETSSVNLTTDKVVSLVIPHTQGE 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      Y +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 39/217 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L      +    I+L S  G+
Sbjct: 646 DKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGR 705

Query: 572 AYTLPAGNL-------LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------------ 612
                   +          RG   A   + D   + +I T    D+              
Sbjct: 706 VVRFAETQVRGMGRVATGVRGIKLATTEISDEVEDVEIETVENEDAEETSSVNLTTDKVV 765

Query: 613 ---------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
                    ++L V+  G       SE    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEND 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + ++ +   L+   ++++  + R  +GVR+    D 
Sbjct: 826 QIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADD 862


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 404/767 (52%), Gaps = 39/767 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   E+ +  L++YI  PDFPTG   +     + +++  GRG   +
Sbjct: 184 HNLSEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGA-TIYGYAGVKDAFETGRGRIIL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E  G     I++TEIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEIETEGN-HEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ L+ +++ F +N   L  G  P+ + L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNG-RPRQLNLKDLIKAFVDHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++   P   +   + RFSL+E Q  
Sbjct: 361 IRRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSEIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELKEIKDKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                      ++  A +    +     + + + IS+ G+I+              V   
Sbjct: 481 RK--------TDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A     +L+ +  GK Y L    +  G     G AIQ L+++  +
Sbjct: 533 GSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD 592

Query: 600 QDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +          T   + ++  LL  + KG              + G   + +  ++ +
Sbjct: 593 DKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + V +   N + + F  + +  M R   GVR  +  D    +V   +C K 
Sbjct: 653 IEVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDPNDEVVGMVCIKD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  N     +  RGG G        ++GK ++
Sbjct: 713 KEKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 78/195 (40%), Gaps = 16/195 (8%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + +G I+        +     ++A+  +E D L      +  + +L+ + +G+A   
Sbjct: 617 LFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEII 632
              A  ++     G     L D  +++ +    + D   + +LVVS +G        +  
Sbjct: 677 HENAVRVMGRTASGVRGMTLDDDPNDEVVGMVCIKDKEKETVLVVSEQGYGKRSNIEDYR 736

Query: 633 ANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  E   K+  +  VT +  + ++ ++   +   +  +  + R   GV
Sbjct: 737 ITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVIGRATQGV 796

Query: 688 RLQSY--KDGGISDV 700
           RL +   ++  I+ V
Sbjct: 797 RLINLGKRNDEIASV 811


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 412/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/769 (34%), Positives = 421/769 (54%), Gaps = 31/769 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            + +    T   E +  + ++  ++  Y+ YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 16  DEPLDIKPTDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMK 75

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+ +  A+KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG+ID
Sbjct: 76  EAGMTYDKAYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSID 135

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE+RM +++  +L  +D++ V +R  Y+    EP V P++ PNLL NG++G
Sbjct: 136 GDSAAAMRYTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTG 195

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++  HN+ E+ +A L LI++PE  I  L+E + GPDFPTGG+I+   + I  +
Sbjct: 196 IAVGMATNMAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVIL-GHQGIKSA 254

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  ++RA   +EE+      IVV+E+PYQV KSRLIE IA L+  K+I  + D+R
Sbjct: 255 YETGRGPIKIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLR 314

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V     R+ +P++++  ++  + M+T F +    L    +P+ + L  +L+
Sbjct: 315 DESDRDGIRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVDN-IPRELTLKELLQ 373

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            +L HR +V+ +RS F M+  D +  ILKGL+IA  +IDE+IA+IR     D+ K  +++
Sbjct: 374 IYLEHRIDVILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMT 433

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L E Q  AIL++RL+ L  LE  +I+ E   L+   E +  ++ S +++++ I  E+
Sbjct: 434 RFGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDERKYSIIKEEL 493

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
             ++E F+       RRT   E++ +      + +I  E + V I+N G+I+        
Sbjct: 494 HAIRERFADK-----RRT---EITGSHVEFEDEDLIPVEEVIVTITNSGYIKRMPVDTYS 545

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  +  KE D ++    + T D ++  +  GK +      L   S +  G+A
Sbjct: 546 QQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEGSRQSKGKA 605

Query: 590 IQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+DL  N+ +   +T   ++    L + +  G       S+     + G   LK+  
Sbjct: 606 VVNLLDLAENESVTATITVKEFEEDKFLFMATRMGTVKKTPLSDFSNVRKAGIIALKLDE 665

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V    G   + +V  + K + F    +  M R  +GVR        I  V+   
Sbjct: 666 GDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPMGRTARGVRGMRLTGDDI--VVSLD 723

Query: 705 ICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I +  T  +      Y +          KRGG G +      R+G  ++
Sbjct: 724 IVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPVIN 772



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
           AT+     E++    + +  G ++              + AL   EGD L        + 
Sbjct: 620 ATITVKEFEEDKFLFMATRMGTVKKTPLSDFSNVRKAGIIALKLDEGDELVNVALTDGSK 679

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            I+++S  GKA      ++         ++ +  L  +  +V+  + D + KLL ++  G
Sbjct: 680 EIMMVSRHGKAIRFCERDVRPMGRTARGVRGM-RLTGDDIVVSLDIVDLSTKLLTITENG 738

Query: 622 NAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                   E     R G+  +     + +   + +      D V V       +   +  
Sbjct: 739 YGKRTTFDEYRGMKRGGQGVITIVTSLRNGPVINVKAVKEEDEVMVTSSEGIFIRIPVKD 798

Query: 678 IPEMSR-GKGVRLQSYKDGG 696
           I    R  +GV++ + + G 
Sbjct: 799 IRAQGRNTQGVKIMNVRPGD 818



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 22/223 (9%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  L  +          E  E K +F  +     ++T   + S   KA +    +++  
Sbjct: 608 NLLDLAENESVTATITVKEFEEDKFLFMATRMGTVKKTPLSDFSNVRKAGIIALKLDEGD 667

Query: 520 ITV------------VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
             V            ++S  G         +R +   +  +  +     D +        
Sbjct: 668 ELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPMGRTARGVRGMRLTGDDIVVSLDIVDL 727

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           + ++L ++ +G             +  G+ +  ++    N  ++         +++V SS
Sbjct: 728 STKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPVINVKAVKEEDEVMVTSS 787

Query: 620 KGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +G    +   +I A  R   G   + V   +K+  V ++  + 
Sbjct: 788 EGIFIRIPVKDIRAQGRNTQGVKIMNVRPGDKVVGVARIKNEE 830


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 411/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/782 (31%), Positives = 411/782 (52%), Gaps = 43/782 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  ++  T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   DDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG++D
Sbjct: 62  EAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V P+K P LL NG++G
Sbjct: 122 GDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LID+P+ ++E+L+  + GPDFPTG  I+     I ++
Sbjct: 182 IAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKIL-GLSGIRQA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRA+  VE + +    IVVTEIPYQV K++LIE IA L+  K +  + D+R
Sbjct: 241 YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++      + P++++  ++  + ++  F + M  L  G  P+++ L  IL+
Sbjct: 301 DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGH-PRILNLKQILE 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+++V+ R+  + ++    R  IL+GL IA  ++DE+IA IR        K  ++ 
Sbjct: 360 YYLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALME 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L++ Q  AIL++RL+ L  LE  +I+ E   ++A    ++ +L+   +       ++
Sbjct: 420 KFGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIMGIAREDL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
            +VK+ F  +     RRT+             + +I +E + + IS++ +I+        
Sbjct: 480 LDVKKRFGDA-----RRTSIV---PDTGDLETEDLIAEEDVVITISHQSYIKRQALTNFR 531

Query: 532 SLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
           +       + A   K        +GD  +  L A T D IL  +  G+ Y      +   
Sbjct: 532 NQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEA 591

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANT 635
           S    G  I+ L+ L  N+ +            D    L + ++ G       SE  +  
Sbjct: 592 SRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSAR 651

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           + G   + +   E++  V   +G + + +   +   + F  D +  M R   GVR  S +
Sbjct: 652 KGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPMGRTSHGVRGISLR 711

Query: 694 DGGISDVICFK--ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 V+     + +    +    +   +  +     +  RGG G +  K   R+G  +
Sbjct: 712 --PHDSVVSMDSCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIV 769

Query: 752 SS 753
            S
Sbjct: 770 GS 771



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 11/200 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            +++    + +N G+++              L A++  EG+ L         + ILL + 
Sbjct: 624 EDEKKFLFMATNLGYVKRTSVSEFKSARKGGLIAINLGEGEELIDVKLTSGHNDILLATR 683

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           DG A      ++         ++ +    H+  +      D T ++L V+ KG     + 
Sbjct: 684 DGYAIHFLEDDVRPMGRTSHGVRGISLRPHDSVVSMDSCVDDTGEVLTVTDKGQGKRTDI 743

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR- 683
           SE    TR GK  + +   ++  L+V          + ++     ++  +   I    R 
Sbjct: 744 SEYRVQTRGGKGIINLKVTDRTGLIVGSKFINETHDIMLISAAGIIIRMNAADISTYGRN 803

Query: 684 GKGVRLQSYKDGGISDVICF 703
            +GV+L   + G     +  
Sbjct: 804 AQGVKLMDLEAGDKVAALAI 823


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/780 (35%), Positives = 416/780 (53%), Gaps = 63/780 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L++ YL YA+S I  RA+PD+RDG KPVHRR+++AMSE+G D+    KKSARIVG+VIGK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+ AA RYTE R+++ A  ++ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++++E+L+ +I GPDFPT GI +  R  IV++Y+ GRG   VRA+  +E    G 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGI-INGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV  E+PYQV K+RL+EKI EL+  KRI  +  +RDES +    ++   +R  + +++
Sbjct: 258 SLIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G+ P+V+ L  +L  +L HRREV+ RR+ F ++    
Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------KPVMVSR---- 420
           R  IL+GL +A  NIDE+IA+I+    P                     K     R    
Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436

Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       + L+  Q  AIL+LRL  L  LE  +I+ E   ++ + E++ ++++  
Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  E+  VKE F        RRT   +          + +I +E   V +S+ G
Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIIDDHS---DLTHEDLIPEEHRVVTLSHEG 548

Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+S    S            A   KE D +K  L A++ D IL  ST GK Y L    +
Sbjct: 549 YIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQV 608

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
             G     G  I  L+ L  ++ I        YD +  + + +++G    V  +E     
Sbjct: 609 PQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPR 668

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            KGK  L ++  +++  V    G   + +V +  K + F   ++ EM R  +GVR    K
Sbjct: 669 TKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKLK 728

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    +      + +    Y +           RGG G +  +   R+GK +S+
Sbjct: 729 AKQNV-IALIVVKPKGNILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSA 787



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L     +      + + +G I+ +      +  +    AL   EGD L     
Sbjct: 629 DEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDI 688

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I+L++  GKA       +         ++  I L   Q+++   V      +L 
Sbjct: 689 TDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRG-IKLKAKQNVIALIVVKPKGNILT 747

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
            +  G        +  +  R G+  + +    +   VV        D V ++ +   L+ 
Sbjct: 748 ATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVR 807

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             +++I +M R  +GVRL       +    + I  ++ E
Sbjct: 808 TRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIE 846


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/757 (32%), Positives = 404/757 (53%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G   KK
Sbjct: 4   ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ ++++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT++  H
Sbjct: 124 RMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLAPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+    +ALI+ PEI I++L++++I PDFPTGGI +   E + ++Y  GRG   +RA
Sbjct: 184 NLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGI-IYGYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  +   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F +    L  G VP+++ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVINLALVDG-VPKILNLKEMMQYYVKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F + A +RR  IL+GL I   N+DE+I+ IR        +  ++ RF L+E Q  A
Sbjct: 362 RRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIERFGLSEIQAKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I +E   +LA  E++  +LNS ++Q   I  E+ +VK+++    
Sbjct: 422 ILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSPEKQMEIIREELLKVKDVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L   +
Sbjct: 534 AQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAARGRSLANIMELPPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    ++    +++ ++ G        E     R G   + +   +++       
Sbjct: 594 KIRTYINIRNFEEPGFIVMATTHGIVKKTALEEFSHPRRTGIAAITIDEGDELLDARLTD 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GDH  ++ +N   ++ F  +++  M R   GV+  +  +      +          +   
Sbjct: 654 GDHQIILAKNSGFVVRFPENEVRPMGRTAMGVKGITLDEDEKCIAMVTTRRMDTALLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNGFGKRSRVEDYRLTRRGARGVITLKPHEKIGALVG 750



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 13/200 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+    V+ +  G ++              ++A+   EGD L  A       +I+L   
Sbjct: 604 FEEPGFIVMATTHGIVKKTALEEFSHPRRTGIAAITIDEGDELLDARLTDGDHQIILAKN 663

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627
            G     P   +         ++  I L+ ++  +           LL V+  G      
Sbjct: 664 SGFVVRFPENEVRPMGRTAMGVKG-ITLDEDEKCIAMVTTRRMDTALLAVTDNGFGKRSR 722

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             +     R  +  + +   EK+  +V +      D + ++  N  +    +  I    R
Sbjct: 723 VEDYRLTRRGARGVITLKPHEKIGALVGLLDVNDEDDLILITVNGIVNRQHVSDIRITGR 782

Query: 684 GK-GVRLQSYKDGGISDVIC 702
              GVRL     G     + 
Sbjct: 783 NTSGVRLIRLMQGDSISALA 802


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   I+VTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----NRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVESDDKEDVAE 821


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIYKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR     ++ +  ++S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L    +    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPDRVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   V         + +IE+  + + +SN+G+I+          K     +
Sbjct: 477 ----GDKRRTELMVGEV-LTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    D        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVDSERSDDAYLFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I +    +
Sbjct: 652 LTQEDMDIIIGTKLGYAVRFNQSTVRSMSRSATGVRGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKNGPLAG 750



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E           +    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVDSERSDDAYLFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       + S       ++  ++L     +V A V     
Sbjct: 649 NVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMSRSATGVRG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  +K   +  ++ VTGD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKNGPLAGLLTVTGDEDLMIITDKG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEV 812



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 92/259 (35%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VDSERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSRA-----------DKATLQQAMIEKEPITVVI-SNRGW------ 529
            +     +RT+  E +             D+  L   ++ +E + ++I +  G+      
Sbjct: 614 TTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +RS+   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 STVRSMSRSATGVRGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++     + N  +           L++++ KG       + I    R   G   +++ 
Sbjct: 734 KGMKTANVTDKNGPLAGLLTVTGDEDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/756 (34%), Positives = 410/756 (54%), Gaps = 33/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   +++ ++ YA+S I  RA+PD+RDG KPV RRI++AM + GL  G    KSA
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEVI K HPHGDQ+VYD++VRLAQ +  RYPLI GQGNFG+IDGD AAAYRYTEAR+
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +A  +L+ +D+D VDF + ++    EP V P+ FPNLLANG++GIAVGMATSIP HN+
Sbjct: 124 SPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A  A+ID+PEI+++ +++++ GPDFPTGG    +R  +  +Y  G+G  R+RAR 
Sbjct: 184 GELINALAAMIDDPEITLDGVMQHLPGPDFPTGG--RLNRVGLKRAYETGKGSLRLRARV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE G G   +VVTEIPYQV K+ LI +IA L+ AK++  +  +RDES      ++   
Sbjct: 242 RTEERG-GRKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +PD+++  +F  ++++T F +NM  +  G  P+V+PL  +++ +L HRREV+ RR+
Sbjct: 301 KRGANPDVVLNQLFKQTNLQTSFTINMLAIVNGE-PRVLPLLAMMRAYLDHRREVVVRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L+GLLIA  ++DE+IA+IR      + K  ++ RF+L+E Q  AIL+
Sbjct: 360 RFDLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQRFALSEVQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++++E   L      + ++L    + W  +  E+  ++E F+      
Sbjct: 420 MRLQRLTGLEREKLQAEYRELQETIAYLRAILADETRLWGVVKDELLAIREKFADE---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E +        + +IE EP+ + ++  G+++              +   A   
Sbjct: 476 -RRTLITEFAE---GFNPEDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAGRT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI- 602
           K+ D       A   D +L  +  G+ Y      L        G  ++  + L   ++I 
Sbjct: 532 KDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARGTHVKSFLPLEEGEEIK 591

Query: 603 --VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
             ++          +  + KG        +       G   + +   + +  V    +G 
Sbjct: 592 ALLSLRSLTDPGYFVFATRKGVVKKTAIRDYQNLNASGLIAINLVEGDDLVDVRIAGSGA 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDVICFKICEGLTWIDSAG 716
            V +     K + F +D++    R  +GVR    K+G   +S ++  K  EG     S+ 
Sbjct: 652 QVVMATRGGKAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGDLLAISS- 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L  RGG G +  K   + G   +
Sbjct: 711 HGYGKRTPLEEYPLQGRGGQGVITFKLNEKVGHLTA 746


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/767 (31%), Positives = 405/767 (52%), Gaps = 39/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQP+  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISI-----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN          E++L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  + DES+ + 
Sbjct: 246 IRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWL 365
             +     R ++ ++++  ++  + ++  F + M  +    +    P+V+ L  +L  +L
Sbjct: 306 MRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDYYL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ +V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR        K  +++RF 
Sbjct: 366 KHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMARFE 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI E+
Sbjct: 426 LTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIGELKAILADEKLLLGVIKKEITEI 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
            + +      G  R T       D     + +I +E + + ++  G+I+           
Sbjct: 486 SDKY------GDDRKTSIGFDEFD--FTVEDLIPEENVVITMTRLGYIKRMTPDNFKSQN 537

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                +  +   + D+++      T + ++  +  GK Y L A  +        G AI  
Sbjct: 538 RGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYEIPEAGRTARGTAIIN 597

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I        Y+    L + + KG       ++     + G   + +  +++
Sbjct: 598 LLQLAPEEKITAVIPIREYNEDHYLFMATKKGLVKKTPITDYANVRKTGLAAISLREDDE 657

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-C 706
           +  V        + +V    + + F    +    R   GV   +  DG   +V+  ++ C
Sbjct: 658 LIEVKFTDNHKDILLVTAYGQCIRFHETDVRSTGRVSMGVIGINLMDG--DEVVGMQLDC 715

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G   +  + +   +        +  RGG G    K   ++G  +++
Sbjct: 716 QGEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKILEKTGNVIAA 762



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +      ++    + + +G ++      
Sbjct: 579 KAYEIPEAGRTARGTAIINLLQLAPEEKITAVIPIREYNEDHYLFMATKKGLVKKTPITD 638

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           ILL++  G+       ++ S       + 
Sbjct: 639 YANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRSTGRVSMGVI 698

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             I+L    ++V   +      +L+VS KG   +    E     R GK        EK  
Sbjct: 699 G-INLMDGDEVVGMQLDCQGEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKILEKTG 757

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V+          + ++     ++      I  ++R   GV+L + +       I 
Sbjct: 758 NVIAAKAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASIT 813


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 411/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/793 (31%), Positives = 403/793 (50%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   +   YL YA+S I  RA+PD RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   QEIFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD+LVR+AQ F  RY LI GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +VA  +   ++++ VDF D Y+  +SEP VFP+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI  A +ALID+P+   E LL ++ GPDFPT GI +     I E+Y  GRG   +RA
Sbjct: 186 NLTEILNATIALIDDPDTDDETLLSHVPGPDFPTAGI-INGAAGIREAYLTGRGRVVMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R   EE  R G   I+VTE+PYQV K+RLIE+IAEL+  K+I  + ++RDES +D   ++
Sbjct: 245 RTHFEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++ +++  + M++ F +NM  +  G  P+ + L  IL  +L HRREV+ 
Sbjct: 305 IELRRGELPDVMLNNLYQQTQMQSVFGINMVAIV-GGQPRTLGLRDILTVFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS-------- 422
           RR+ + ++    R  IL+GL +A  NID +IA+I+     ++ +  ++++          
Sbjct: 364 RRTIYDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHAL 423

Query: 423 ---------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                      L++ Q  AIL +RL  L  LE+ +I  E  +LL
Sbjct: 424 LERADAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSLL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   +  +L S  +    I  E+  + E F  +     RRT   E+    +    + +I
Sbjct: 484 EKIIDLLDILRSESRLMQVIRDELVAMIEEFGDA-----RRT---EIVFDYEDLSIEDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V +S  G+I++         +      S+   K+ D ++  + A T    L+ +
Sbjct: 536 AEEDRVVTLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFT 595

Query: 568 TDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
             G+ Y      L  G     G  +  ++ L   + +        +     +   ++ G 
Sbjct: 596 NLGRVYWRKVYQLPQGARGARGRPVVNILPLQEGERVNALLPVREFVDDHYIFFATATGQ 655

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                  +     + G   + +  ++++       G   + +     K + F+   +  M
Sbjct: 656 VKKTPLVDFSRPRQAGIIAIDLRDDDRLVGARLTDGSRELMLFSNAGKSIRFAEADVRSM 715

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R   GVR     +  +  V+   +      + +    Y +        L  RGG G + 
Sbjct: 716 GRTAGGVRGIRMDE--MQRVVSLLVVGEGQVLTATEHGYGKRTPIDDFPLQGRGGQGVIA 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+G  + +
Sbjct: 774 IQTSERNGALVGA 786



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 15/220 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +      +  G ++        +     + A+  ++ D L  A     +  ++L S  G
Sbjct: 643 DDHYIFFATATGQVKKTPLVDFSRPRQAGIIAIDLRDDDRLVGARLTDGSRELMLFSNAG 702

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K+      ++ S       ++  I ++  Q +V+  V     ++L  +  G        +
Sbjct: 703 KSIRFAEADVRSMGRTAGGVRG-IRMDEMQRVVSLLVV-GEGQVLTATEHGYGKRTPIDD 760

Query: 631 IIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G+  + +     +   +   +    D V ++ +   L+   I QI  +SR  +
Sbjct: 761 FPLQGRGGQGVIAIQTSERNGALVGAALVQDEDEVILISDAGTLVRTEISQISSVSRNTQ 820

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           GV L    D     ++       ++    A R  N +E D
Sbjct: 821 GVILIRLSDD--EKLVQLAAVSAMSVDSDADRDENATEED 858


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 412/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 413/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEE-KGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + + +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++     V    + E    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDD-KAVSMEVVLEDEALLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 30/437 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-ITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIINLIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L+A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLEDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVIC 702
           GV+L    +      I 
Sbjct: 784 GVKLMRTSEEEKIVAIA 800


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/786 (31%), Positives = 399/786 (50%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL     + K A +
Sbjct: 28  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 88  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D++ VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT G  +  R+ I  +Y  GRG  +VRAR  V
Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-FIHGRDGIRAAYEKGRGTIQVRARTVV 266

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   +     IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 267 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 326

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + M  +  G  P+++ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 327 RDAMAQVVLNNLYAHTQMQMGFGVIMLAI-DGGQPRILTLKEMLERFVAHRRDVVTRRTR 385

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+     D  +  M++RF+L+E Q  AIL +
Sbjct: 386 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 445

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K   + I  E++EVK++F+       
Sbjct: 446 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 500

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 501 RRT---EIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 557

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 558 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 617

Query: 605 AFVYD------------------------------STCKLLVVSSKGNAFIVEESEIIAN 634
                                              +   + +V+ KG        +    
Sbjct: 618 ILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVTRKGLIKKTRLEQFARP 677

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++          H+ +       + F    +  M R   GV+  + 
Sbjct: 678 RAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 737

Query: 693 KDGGIS-----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           + G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 738 EAGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 797

Query: 748 GKFLSS 753
           G  +++
Sbjct: 798 GPVVAA 803



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 23/237 (9%)

Query: 500 CEVSRADKATLQQAMIEKEP-ITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
            E   A+    ++A     P    +++ +G I+        +  +  + AL  +EGD L 
Sbjct: 635 AEGEGAEVEKAEEATPPGTPAFVFMVTRKGLIKKTRLEQFARPRAAGIIALGIEEGDELI 694

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD- 609
            A        ILL +  G A      ++   R  G     +  I L    ++V       
Sbjct: 695 AARLTDDRSHILLSTARGMAIRFEESDV---RPMGRTAYGVKGITLEAGDEVVAGAAIPA 751

Query: 610 -----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDH 660
                    +L V++ G     E +E    TR GK  + + + E+   VV        + 
Sbjct: 752 AAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEE 811

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           V ++     L+      I  + R  +GVRL + +      V   ++ E     + AG
Sbjct: 812 VMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQVVGVARVAETTPEAEEAG 868


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 415/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +++D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGGI +   + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGI-IYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G   IVVTEIPYQV K+ +I+K A+LI  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEV-QGRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + ++T F +N   L  G  PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNG-RPQLLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKRFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L + +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDILANEERRMQIIKDELLEVKEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPDEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++            Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPRLNGINAIGIKEGDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG   + +  ++ K + F   +   M R   GVR  +  D     V    +      
Sbjct: 654 KLTTGTSQIFLGLKSGKAIRFEESKTRPMGRNASGVRGITLADDNDEVVGMVSVHNFDDD 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTDKTGGLVA 755



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 20/249 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       + + DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSKTSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 ++A+  KEGD L  A     T +I L    GKA           GR       +
Sbjct: 633 RPRLNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPMGRNASGVRGI 692

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +  ++++ +    V++    +LVVS KG        +     R GK    +S  +K   
Sbjct: 693 TLADDNDEVVGMVSVHNFDDDILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTDKTGG 752

Query: 653 VVK----VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +V        D + ++ ++   +   ++ +  M R   GVRL + K G  S     K+ +
Sbjct: 753 LVAIKNVTDSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIK-GKDSIAAVAKVMK 811

Query: 708 GLTWIDSAG 716
               +D  G
Sbjct: 812 DEDAVDEEG 820


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/818 (32%), Positives = 414/818 (50%), Gaps = 89/818 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  + +  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAAL-INGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVAL-DHGQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I +
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ LN N+ I        Y+    +++ ++ G   
Sbjct: 596 GRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMATAGGIVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +  +E       G   L +  E+++  V    G + + +     +++ FS   +  M R
Sbjct: 656 KIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGR 715

Query: 684 -GKGVRLQSYK--------------------------DGGISDVICFKICE-GLTWIDSA 715
              GVR                               D  I  V+   I +     + + 
Sbjct: 716 LATGVRGIKLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILTAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+GK +++
Sbjct: 776 QNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 38/227 (16%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L  A  E++   V+ +  G ++ +      +  S  + AL+ ++ D L     
Sbjct: 627 NERITAILPVAAYEEDKFVVMATAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDI 686

Query: 557 AHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------- 600
              ++ I+L S+ G+        + A   L+    G  + L  DL+ ++           
Sbjct: 687 TDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLSDDESAVEIEDVSDD 746

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  +  +  ++L  +  G     +  E    +R  K  + +   E+
Sbjct: 747 NAEETLDLNIDKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSER 806

Query: 650 MKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
              VV        D + ++ +   L+   + ++  + R  +GVRL  
Sbjct: 807 NGKVVAAAQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIR 853


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 411/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA   +DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILEKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              TG+   V+G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTTGNEEIVIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKNGNLAG 751



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
               +    V ++ +G ++  K           L AL  +EGD L         + I++ 
Sbjct: 604 DEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIVIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+++ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIITEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  EK   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITEKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           R   GV++    D   + ++ F + E      ++ 
Sbjct: 783 RATQGVKVMRLDDS--ARIVTFALVEPEEVEQASE 815



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 78/259 (30%), Gaps = 30/259 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  E   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASENNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIVIG-TKFGYSVRFKEDTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L+++  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIITEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +       N ++           ++V++  G       + I    R   G   +++    
Sbjct: 738 KTANITEKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSA 797

Query: 649 KMKLVVKVTGDHVAVVGEN 667
           ++     V  + V    E+
Sbjct: 798 RIVTFALVEPEEVEQASED 816


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 410/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   AKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   V
Sbjct: 185 PHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIA+IR     D+ K  M+ RF L++ Q  
Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     +  +L + ++    I  E++E+ + F   
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGD- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E I + ++N G+I+          +     + 
Sbjct: 482 ----DRRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++ +
Sbjct: 536 GMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSS 595

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I               L   +  G       +        G   + +   +++  V++
Sbjct: 596 ERIEAIISASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIE 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+ V ++G +    + F    + +M R   GVR    +DG    V    I E    + 
Sbjct: 656 THGEDVVIIGTHDGYSVTFKEALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 500 CEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
            + S   +A +  +   +E       +  G ++     +        L A+  +E D L 
Sbjct: 592 IDSSERIEAIISASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  H  D +++ + DG + T     +   R  G     +  I L     +V A V   
Sbjct: 652 NVIETHGEDVVIIGTHDGYSVTFKEALV---RDMGRTAAGVRGIRLRDGDYVVGAAVITE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
             ++LV++  G     + SE     R GK      +   +     L      + + V+  
Sbjct: 709 DSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
              L+ F++  + +  R   GVRL   ++   + V+     E
Sbjct: 769 KGVLIRFNVATVSQTGRATLGVRLMKMENN--AKVVTMATVE 808


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/760 (35%), Positives = 443/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|332360261|gb|EGJ38074.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK355]
          Length = 826

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VD+ D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +IDNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLGESIDAVKLVIDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVITIIKEELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 -----DRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 598

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 599 GENIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + ++G    V    I EG   +
Sbjct: 659 LTDGVADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLREGD-QVVGAGVIAEGDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAG 757



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 14/229 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          Q     +      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGENIQTIINVQQDRSDDSYLFFTTRHGVVKRTSVTEFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + S       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGVADVIIGTKFGYSVRFNETAVRSMSRIATGVRG-VNLREGDQVVGAGVIAEGD 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       SE     R GK      +   +     L+     + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            ++  S+  I +  R   GV++        + ++ F   E     D A 
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTSVEADDKEDVAE 821


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD  AA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FIIDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL GLLIA  +IDE+I IIRN +   + +  +++R+ L+E Q 
Sbjct: 359 VTRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+     +  +L   ++    I  E+ E+K  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          +     +
Sbjct: 479 E-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T       +D    L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVQAEHDDHSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+ +Q+  M R   GVR  + +      V    I +    +
Sbjct: 652 LTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRGVNLRTNDYV-VGASVISDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYATKGRGGKGMKTANITEKNGPLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 76/217 (35%), Gaps = 14/217 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          QA  +        +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGETIQTIINVQAEHDDHSYLFFTTRYGVVKRTSVTEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                +    I++ +  G A       + +       ++  ++L  N  +V A V     
Sbjct: 649 NVFLTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRG-VNLRTNDYVVGASVISDNQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +  EK   +  ++ V GD  + V+    
Sbjct: 708 EVLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKNGPLAGLMAVNGDEDLMVITNTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            ++  ++  I +  R   GV++     G  + ++ F 
Sbjct: 768 VIIRTNVANISQTGRATLGVKVMRLDKG--AQIVTFT 802


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/773 (29%), Positives = 389/773 (50%), Gaps = 36/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +       ++ V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRR++++M + G
Sbjct: 1   MTETLPPEHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + K +R+VG+V+G  HPHGD S+YD+LVRLAQP+  R+PLI GQGNFG+   D 
Sbjct: 61  YRPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+R+  +A  +L  ++ED VDF D Y+    EP V P++ PNLL NG  GIAV
Sbjct: 121 AAAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +  +  ++NPE   E LL    E I GPDFPT G+I+    +I +
Sbjct: 181 GMATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIM-GTNAIAD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG  ++RA   VEE  +G   +VVTE+PYQV    LIE IA +    ++  + DI
Sbjct: 240 AYRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDI 299

Query: 302 RDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DES +     ++    R   P +++ +++  + ++  F +NM  L    VP+ + LD +
Sbjct: 300 ADESNSRRGMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALV-EGVPRTLRLDQV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           ++ ++ H+ EV+ RR+ FR++  + R  IL+GL+ A   +DE+IA+IR     D  +  +
Sbjct: 359 IRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q +AIL ++LR L  LE  +I  +L  +  E E +  +L+  ++Q   I  
Sbjct: 419 IELLEVDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIEDLKDILDKPERQRQIIRD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+  + +          RRT        +     + +I  E + V ++  G+        
Sbjct: 479 ELMAIVDKHGD-----DRRTRIV---PHEGEVSMEDLIADEDVVVTLTRTGYAKRTRTDL 530

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            R+ K     +     K+ D +       T D IL  +  G+ Y   A  L        G
Sbjct: 531 YRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRTARG 590

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L+    ++ I        Y +   L++ +  G       ++  +N   G   + +
Sbjct: 591 QHVANLLAFQPDEHIAQVMQIKDYTAAPYLVLATRNGLVKKSRLTDFDSNRSGGLIGVNL 650

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDV 700
             ++++   V  +  D + +V    + + F      +  M R   GV    + +G     
Sbjct: 651 KDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEALRPMGRATSGVLGMRFNEGDELLA 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     +    + + G  Y +        +  RGG G L  +   + G+ + +
Sbjct: 711 MGVVRPDRYVLVATDG-GYAKRTPIDDYPVQGRGGKGVLTIQYDRKRGRLVGA 762



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  +    D +       ++ K+ D L  A
Sbjct: 600 QPDEHIAQVMQIKDYTAAPYLVLATRNGLVKKSRLTDFDSNRSGGLIGVNLKDDDELVGA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   ++ +  N   +++   V     
Sbjct: 660 VLCSADDDLLLVSAEGQSIRFHASD-EALRPMGRATSGVLGMRFNEGDELLAMGVVRPDR 718

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGENR 668
            +LV +  G A      +     R GK  L +       ++   + V   D +  +    
Sbjct: 719 YVLVATDGGYAKRTPIDDYPVQGRGGKGVLTIQYDRKRGRLVGALIVDVDDELYAITSTG 778

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++  +  ++ +  R  KGVRL +  DG     + 
Sbjct: 779 GVIRTTAKEVRKAGRQTKGVRLMNLGDGTSVVAVA 813


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 412/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  ++GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTISGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTISGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 397/762 (52%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +   S    G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++  G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G +      ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG-IRLRDHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           +S KG        E     R GK     +  EK   +  V  V G + + V+ ++  ++ 
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIR 774

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGG 696
           F+I  + +  R   GVRL    D  
Sbjct: 775 FNIQNVSQTGRATLGVRLIRVDDDA 799



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           +   ++ ++ G+        +RS+   +  +  +  ++ D +  +        + ++S  
Sbjct: 659 QDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDILKPDSEVFVISEK 718

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A         G+ I+       N  +      D T  +LV++  G        
Sbjct: 719 GYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIRFNIQ 778

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            +    R   G   ++V  + K+  + KV
Sbjct: 779 NVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/763 (33%), Positives = 423/763 (55%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  SEPVV P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGGI +   + + E+++ GRG   +RA
Sbjct: 185 NLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGI-IYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+G G   +VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   V++
Sbjct: 244 KSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  G  P+++ L  ++  ++ HR +V+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNG-RPEMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E D +L   E ++ +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVILARKERRMQVIKDELLEVKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V     
Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLSEYKTQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
           + +  D L+          +L  + +GK Y +    +  G     G AIQ LI+++  +D
Sbjct: 534 NTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSKASKGRAIQNLINIDP-ED 592

Query: 602 IVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            V AF+         Y +   +++ + KG        +       G   + +   +++  
Sbjct: 593 KVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPRTNGINAITIKEGDELLE 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709
               TG+  V +   + K + F   +   M R   GVR  +  D     V    + +   
Sbjct: 653 AKLTTGNSQVMLGLRSGKAIRFEESKTRPMGRNASGVRGITLADDKDEVVGMIAVNDFES 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 713 DILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVA 755



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 14/223 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            L+      +   ++ + +G ++  +           ++A+  KEGD L  A       +
Sbjct: 602 DLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPRTNGINAITIKEGDELLEAKLTTGNSQ 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L    GKA           GR       + +  + ++ +    V D    +LVVS  G
Sbjct: 662 VMLGLRSGKAIRFEESKTRPMGRNASGVRGITLADDKDEVVGMIAVNDFESDILVVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  EK   +V +      D + ++ ++  ++  +++ 
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVAIKNVSDIDDLMIINKSGIVIRMAVED 781

Query: 678 IPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSAGR 717
           +  M R   GVRL + K  D   +        + L  ++ A +
Sbjct: 782 LRVMGRATQGVRLINLKGNDAIAAVAKVLHDEDDLDSMEDAEK 824


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/822 (31%), Positives = 409/822 (49%), Gaps = 90/822 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NPE++I +L++YI GPDFPT  I +  ++ I ++Y+ GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPELTITELMDYIPGPDFPTAAI-INGKKGIEQAYQTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L   + P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQ-PKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R   L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGN 419

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VKAMLDKAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +LL    ++  +L + ++    I  E+ E+KE +        RRT   E++ A      
Sbjct: 480 QSLLELIAELLFILANPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISL 531

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 532 EDLINEENVVVTLSHEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTI 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  ST G+ Y L    L   S    G+ I  L+ L  ++ I        Y+    + + +
Sbjct: 592 LCFSTAGRLYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVRDYEDDKYIFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G       +        G   + ++  + +  V    G + + +  +  K++ F   +
Sbjct: 652 AFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAE 711

Query: 678 -------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                                    +  M R   GVR     D      +     +G   
Sbjct: 712 ETAVVDENGNPVLDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRVVSLIVPKNDGA-I 770

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      Y +           R   G +  K   R+G  + +
Sbjct: 771 LTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGA 812



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 37/249 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      A L     E +    + +  G ++     +          A++  EGDSL   
Sbjct: 627 EADERITAILPVRDYEDDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                ++ I+L +  GK                                  R  G     
Sbjct: 687 DITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNPVLDEEGKPEIRFKGVRPMGRTATG 746

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-- 646
           +  I +  +Q +V+  V  +   +L V+  G     +  +  + +R   G   +KVS   
Sbjct: 747 VRGIKMPDDQRVVSLIVPKNDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERN 806

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V     D + ++     L+   ++++  + R  +GV L    D     V+  + 
Sbjct: 807 GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDE--EQVVGLQR 864

Query: 706 CEGLTWIDS 714
            E +   +S
Sbjct: 865 IEEIEVTES 873


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/755 (32%), Positives = 402/755 (53%), Gaps = 31/755 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K +++   ++  YL YA+S I  RAIPD+RDG KPVHRRI +AM E+  DF   +KKS
Sbjct: 2   DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  RY L+ GQGNFG++DGD  AA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++    ++ ++++ + F+  Y+    EPVV P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C   LA++D+P+I++  L+ YI GPDFPT G I      I ++Y  GRG  ++RAR
Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCV-GIKDAYETGRGTIKMRAR 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE GR    +++TE+PYQV K+RL+E+IAEL+  K+I  ++DIRDES  +   V+  
Sbjct: 241 VEVEESGR-RNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLT 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P ++   ++  + +E+ F + M  +   + P+V+ L G+L  +L  RR V+ RR
Sbjct: 300 LRQGDEPRVIENQLYKHTALESSFGVIMLAVVDNK-PEVLNLKGVLNNFLDFRRLVIIRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + + +   ++R  IL+GL  A  ++DE+I++IR    P   K  ++ RF  ++ Q  AIL
Sbjct: 359 TQYELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMERFEFSDVQAQAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  E   ++ E E++  +L+S       I  EI+E+ + +      
Sbjct: 419 EMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAALVDQVIREEIKELTDQYGDLRK- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
                   E+         + +I  E + V IS  G+I+          +      + + 
Sbjct: 478 -------TEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKGRTGMS 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D +     A T D +L+ +  G+ Y L    +        G+AI  L+ +  ++ I
Sbjct: 531 TREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDERI 590

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            T      +      ++ +  G     + S        G   + +  ++++  V    G 
Sbjct: 591 QTVLPVKEFKEGFFAVMATRNGVIKKTDLSAYSNPRSTGIRAIVLDDDDELISVCVTDGS 650

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           H + ++    K +  +  +   + R  +GVR       G   V    I EG   +    +
Sbjct: 651 HDLFLMSRAGKSIRVNEREFRPLGRVSRGVRGMKL--DGSRMVGMDVIEEGKAILVITEK 708

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +  N        RGG G L  +   R+G  + 
Sbjct: 709 GFGKRTNAEEYRCQSRGGKGVLNIRVTERNGSVVG 743



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 16/217 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +     +  L     ++    V+ +  G I+     +        + A+   + D L  
Sbjct: 584 VQKDERIQTVLPVKEFKEGFFAVMATRNGVIKKTDLSAYSNPRSTGIRAIVLDDDDELIS 643

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTC 612
                 +  + L+S  GK+  +        R  G   + +  +      +V   V +   
Sbjct: 644 VCVTDGSHDLFLMSRAGKSIRVNEREF---RPLGRVSRGVRGMKLDGSRMVGMDVIEEGK 700

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +LV++ KG        E    +R GK  L +   E+   VV        + + ++ ++ 
Sbjct: 701 AILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERNGSVVGFRQVGEDEQILMITDHG 760

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICF 703
           +L+   + QI  + R  +GV+L +  +G  + DV   
Sbjct: 761 RLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDVAVL 797


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/767 (30%), Positives = 404/767 (52%), Gaps = 39/767 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +K
Sbjct: 4   QDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTE
Sbjct: 64  KSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++AE +L+ +D+D VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++P+
Sbjct: 124 ARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPT 183

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E+ +  +A ID   E+ +  L++YI  PDFPTG   +     + +++  G+G   +
Sbjct: 184 HNLSEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGA-TIYGYAGVKDAFETGKGRIVL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E        I+++EIPY V K+ LI+ IA+L+  KRI  + ++ DES      +
Sbjct: 243 RGKAEIETE-NNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +  +++  ++ ++ +++ F +N   L  G  P+++ L  ++K ++ HR EV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKMTALQSSFSVNNIALVNG-RPKLLNLKDLIKAFVDHRHEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL+IA  NIDE+IAII++   P   +   + RFSL++ Q  
Sbjct: 361 IRRTKYDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSDIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E + +      +  +L +       I  E++E+K+ +   
Sbjct: 421 AIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELQEIKDKYGDE 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                      ++  A +    +     + + + IS+ G+I+              V   
Sbjct: 481 RK--------TDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A     +L+ +  GK Y L    +  G     G AIQ L+++  +
Sbjct: 533 GSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD 592

Query: 600 QDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +          T   + ++  LL  + KG              + G   + +  ++ +
Sbjct: 593 DKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGL 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + V +   N + + F  + +  M R   GVR  +  D    +V   +C K 
Sbjct: 653 IEVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDSNDEVVGMVCIKD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  N     +  RGG G        ++GK ++
Sbjct: 713 KEKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 79/195 (40%), Gaps = 16/195 (8%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + +G I+        +     ++A+  +E D L      +  + +L+ + +G+A   
Sbjct: 617 LFCTKKGVIKKTLLEAYSRPRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676

Query: 576 --PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEII 632
              A  ++     G     L D ++++ +    + D   + +LVVS +G        +  
Sbjct: 677 HENAVRVMGRTASGVRGMTLDDDSNDEVVGMVCIKDKEKETVLVVSEQGYGKRSNIEDYR 736

Query: 633 ANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  E   K+  +  VT +  + ++ ++   +   +  +  + R   GV
Sbjct: 737 ITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVIGRATQGV 796

Query: 688 RLQSY--KDGGISDV 700
           RL +   ++  I+ V
Sbjct: 797 RLINLGKRNDEIASV 811


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/769 (32%), Positives = 402/769 (52%), Gaps = 37/769 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L  G+ P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +     K  ++ 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             +++ +      G  R T       D     + +I +E   + ++  G+I+        
Sbjct: 479 ALIRDKY------GDERRTQIGFDVDD--ISMEDLIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  +   + D ++      T   I+  +  G+ Y L A  +        G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I        Y+    LL+ +  G        E     + G   + +  
Sbjct: 591 IVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIMEYANIRKTGLAAITLKD 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++++  V     D  V +V +N + + F    +  + R   GVR  +    G  +VI  +
Sbjct: 651 DDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVRGINLT--GDDEVIGMQ 708

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 709 LDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTGDVVG 757



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 20/244 (8%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           + +         R +        +      A +     E+    ++ +  G ++      
Sbjct: 575 KAYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIME 634

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  K+ D L    +    + + L++ +G+       ++         ++
Sbjct: 635 YANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I+L  + +++   +      LL+VS+ G       SE     R GK      +   + 
Sbjct: 695 G-INLTGDDEVIGMQLDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTG 753

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           + +  V  V  D  + ++     ++  ++D I  + R   GV++ +  +      I    
Sbjct: 754 D-VVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVR 812

Query: 706 CEGL 709
            E L
Sbjct: 813 EEKL 816


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/760 (35%), Positives = 444/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL+S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  +P+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTQPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATLV 707

Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|332522461|ref|ZP_08398713.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
 gi|332313725|gb|EGJ26710.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176]
          Length = 836

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIEITKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLL+A  ++DE+IAIIRN       +  ++SRF L+E Q 
Sbjct: 359 ITRRTRFDKEKAEARAHILEGLLVALDHLDEVIAIIRNSQTDVIAQAELMSRFQLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L    +    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPDRISAIIIQEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEVEDVLITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D +K  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G       SE     + G   L +   +++  V+
Sbjct: 592 EETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELINVL 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++  ++   + F    I  M R   GVR    +D  +  V   +I +    +
Sbjct: 652 LTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRGVKLRDDDLV-VGASRISDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 IITEKGYGKRTPATEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 76/220 (34%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLK 552
             E          +            + +G ++   +          L AL+ K+GD L 
Sbjct: 589 LDEEETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L    ++ I++ +  G +      ++ +       ++  + L  +  +V A       
Sbjct: 649 NVLLTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRG-VKLRDDDLVVGASRISDNQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG       +E     R GK      +   + +   LV     + + ++    
Sbjct: 708 EVLIITEKGYGKRTPATEYPTKGRGGKGIKTANITAKNGQLAGLVTVTGHEDIMIITNKG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  SI  + +  R   GV++        S ++ F + +
Sbjct: 768 VIIRTSIADVSQTGRSTMGVKVMRL--DQDSKIVTFALVD 805


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/769 (32%), Positives = 402/769 (52%), Gaps = 37/769 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  + L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  ++++ VDFR  ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN++E+  A + +IDN      E +IE+LLE I GPDFPTG  I+  R  I ++
Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA L+  K++  + ++R
Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  ++  + ++  F + M  L  G+ P+ M L  +L 
Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +     K  ++ 
Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q  AI+++RLR+L  LE  +++ E   L+    ++ ++L   K+    I  EI
Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             +++ +      G  R T       D     + +I +E   + ++  G+I+        
Sbjct: 479 ALIRDKY------GDERRTQIGFDVDD--ISMEDLIPRENTVITMTKLGYIKRMTVDNFK 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  +   + D ++      T   I+  +  G+ Y L A  +        G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ L   + I        Y+    LL+ +  G        E     + G   + +  
Sbjct: 591 IVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIMEYANIRKTGLAAITLKD 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++++  V     D  V +V +N + + F    +  + R   GVR  +    G  +VI  +
Sbjct: 651 DDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVRGINLT--GDDEVIGMQ 708

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 709 LDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTGDVVG 757



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 20/244 (8%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           + +         R +        +      A +     E+    ++ +  G ++      
Sbjct: 575 KAYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYEEGKYLLMATKYGVVKKSSIME 634

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  K+ D L    +    + + L++ +G+       ++         ++
Sbjct: 635 YANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCIGRTSMGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I+L  + +++   +      LL+VS+ G       SE     R GK      +   + 
Sbjct: 695 G-INLTGDDEVIGMQLDSQGEALLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITEKTG 753

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           + +  V  V  D  + ++     ++  ++D I  + R   GV++ +  +      I    
Sbjct: 754 D-VVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVR 812

Query: 706 CEGL 709
            E L
Sbjct: 813 EEKL 816


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/838 (32%), Positives = 406/838 (48%), Gaps = 112/838 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N  ++I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +       I+V E+PYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++  
Sbjct: 247 EVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++T F +NM  L   + P+VM L  IL  +L HRREV+ RR
Sbjct: 307 IKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL +A  NID II +IR+ D P                      
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL  L  LE  +I  E  +LL   
Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S ++    I  E+  V+E +        RRT   E+S +      + +I  E
Sbjct: 486 AELLFILASPERLMEVIRDELLAVREQYGDE-----RRT---EISASSAEINIEDLITPE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  ST G
Sbjct: 538 DVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           K Y L    L        G  I  L+ L   + I        Y     +   ++ G    
Sbjct: 598 KVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI--------- 675
              S        G   + +   +++  V    G + + +  +  K++ F+          
Sbjct: 658 TSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAAD 717

Query: 676 -------------------DQ--------------------IPEMSRGK-GVRLQSYKDG 695
                              D                     +  M R   GVR     +G
Sbjct: 718 ADVSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNG 777

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     EG   + +    Y +           RG  G    K   R+GK + +
Sbjct: 778 DKVVSLIVPRGEGA-ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERNGKVIDA 834



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 58/253 (22%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +      +  G ++     +        + A++ KEGD L   
Sbjct: 626 EEGERITAILPVKEYADDKYVFFATADGTVKKTSLSAFSRPLSSGIRAINLKEGDELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYT--------------------------LPAGNLLSGRGHGE 588
                ++ I+L S  GK                             + AGN   G  +GE
Sbjct: 686 DITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVSDDVDGDDESVIDAGNDDDGSDNGE 745

Query: 589 AIQLL---------------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             +                       I L +   +V+  V      +L  +  G      
Sbjct: 746 GSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKRTA 805

Query: 628 ESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +E    +R  +G   +KV     K+   ++V   D + ++     L+   + ++  + R
Sbjct: 806 LTEYPTKSRGTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSIIGR 865

Query: 684 GK-GVRLQSYKDG 695
              GVRL    + 
Sbjct: 866 NTGGVRLIRTGED 878


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/774 (30%), Positives = 397/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP+       E  +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ + +        RRT   E+  A      + +I +E + V I++ G+        
Sbjct: 478 ELAEIVDKYGDE-----RRT---EIIPATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L  G     G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 708 LSMSVVHDGEFLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  +++  V     
Sbjct: 659 QLVSEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++   +DQI   SR   GVRL +  D      I   + E 
Sbjct: 778 GVIRTEVDQIRPSSRATMGVRLVNLGDDVELLAIDRNVEED 818


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 411/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+L+A    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+   ++G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                    V ++ +G ++  K           L AL  +EGD L      +  + I++ 
Sbjct: 604 DEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+++ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIITEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE 707
           R  +GV++    D   + ++ F + E
Sbjct: 783 RVTQGVKVMRLDD--TARIVTFALVE 806



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 78/253 (30%), Gaps = 30/253 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  +   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASDNNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG-TKFGYSVRFKEDTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L+++  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIITEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +     + N ++           ++V++  G       + I    R  +G   +++    
Sbjct: 738 KTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTA 797

Query: 649 KMKLVVKVTGDHV 661
           ++     V  + +
Sbjct: 798 RIVTFALVEPEEI 810


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 408/793 (51%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  A+KK
Sbjct: 6   KEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL++NPEI+I++L+E+I GPDFPTG I +  R  I+++YR GRG   VRA
Sbjct: 186 NMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAI-ISGRAGILQAYRTGRGRIYVRA 244

Query: 255 RWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   + +  +    I++ EIPYQ+ K+RLIE+IAEL+  K+I  + ++RDES +D   V+
Sbjct: 245 KAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    D+++ +++  + +++ F +NM  L  G+ P+VM L  I+  +L HRREV+ 
Sbjct: 305 IELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQ-PKVMNLKEIIDAFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  +L+GL IA  NID II +I+N   P                    
Sbjct: 364 RRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVAM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL LRL  L  LE  ++ +E    L 
Sbjct: 424 LEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKLK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E      +L    +    I  E+ EV E F              E+  +      + +I 
Sbjct: 484 EIADYLHILGDSDRLKQVIREELEEVVEEFGDE--------RLTEIVDSQHDLSVEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E   V IS+ G+ ++         +   +  SA   K+ D ++  L A T   IL  + 
Sbjct: 536 PEDRVVTISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +     +  G  +  L+ L+  + + +      Y     + + ++KG  
Sbjct: 596 LGKVYWLKVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAEYTEDHYIFMATAKGIV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   L+++ ++ +       G+  V ++    K + F+   +  M 
Sbjct: 656 KKTALTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  +GVR      G   ++I   I  EG   + ++   Y +           RG  G + 
Sbjct: 716 RTARGVRGIRM--GDEDEMIALIIPQEGSYVLTASANGYGKKTMASEFPRKGRGTKGVIA 773

Query: 741 PKGFPRSGKFLSS 753
                R+G  + +
Sbjct: 774 MVTNDRNGPLVGA 786



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 81/227 (35%), Gaps = 13/227 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +      + L  A   ++    + + +G ++        +  SV L AL   E D L   
Sbjct: 626 DPGERVTSILPVAEYTEDHYIFMATAKGIVKKTALTDFSRPRSVGLRALELAEDDVLVGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              H    ++L+S+ GKA      ++         ++  I +    +++   +      +
Sbjct: 686 AITHGESDVMLMSSAGKAVRFAEQDVRPMGRTARGVRG-IRMGDEDEMIALIIPQEGSYV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S+ G       SE     R  K  + + + ++    +  V     D + ++     +
Sbjct: 745 LTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRNGPLVGAVQVGEADELMLISNQGTM 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +   + +I  + R  +GVR+   K+G    V   +I E       A 
Sbjct: 805 VRTRVSEISTLGRNTQGVRVIRLKEGE-ELVRITQIEESDELPSEAE 850


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/823 (32%), Positives = 408/823 (49%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I++ +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS--------- 422
           R+ F ++    R  IL+GL IA  NID +I +IR     D+ +  +++R           
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILTSPERLMEVIREELERVKSEFGDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+  Q+ 
Sbjct: 656 GTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVR 715

Query: 680 EMSR-GKGVRLQSYK----DGGISDVICFKICEGLT------------------------ 710
            M R   GVR            + DV    +    T                        
Sbjct: 716 GMGRVATGVRGIKLATTEISDEVEDVEIETVENEDTEETSSVNLTTDKVVSLVIPHTQGE 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      Y +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 39/217 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L      +    I+L S  G+
Sbjct: 646 DKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGR 705

Query: 572 AYTLPAGNL-------LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------------ 612
                   +          RG   A   + D   + +I T    D+              
Sbjct: 706 VVRFAETQVRGMGRVATGVRGIKLATTEISDEVEDVEIETVENEDTEETSSVNLTTDKVV 765

Query: 613 ---------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
                    ++L V+  G       SE    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEND 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            + ++ +   L+   ++++  + R  +GVR+    D 
Sbjct: 826 QIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADD 862


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/766 (31%), Positives = 403/766 (52%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N   +  ++ V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MANENGQ-DGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+++VR+AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ ++++ +D+   Y+E + EP V P++FPNLL NG +GIAV
Sbjct: 120 AAAMRYTEARMSKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+  A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  
Sbjct: 180 GMTTNIPPHNLAEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVM-GKSGIRHAYES 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   +RA+  VE    G   I+VTEIPY V K++L+E+IAEL   KR+  + D+ DES
Sbjct: 239 GKGTITLRAKVDVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R +   +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L
Sbjct: 299 DRDGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIVNGA-PKVLSLKSILEHYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RR+ F ++  + R  IL GL IA  +ID II IIR+    D  K +++ R+ 
Sbjct: 358 VHQEEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMERYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  ++++E +NL+A    +  +L   ++    I  E+ E+
Sbjct: 418 LSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALITDLKDILAKPERIKKIIYDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F        RRT          +   + +IE+E + + +++ G+I+           
Sbjct: 478 QSKFGDK-----RRTELLVGEV--LSIEDEDLIEEEDVVIALTHNGYIKRLPASEFKVQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D ++  +   T + +L  +  GK Y      +        G  I  
Sbjct: 531 RGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGYEIPEYGRTAKGIPIIN 590

Query: 593 LIDLNHNQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+ +N ++ + T             L  ++  G        E       G   L +  ++
Sbjct: 591 LLGINSDERVQTVVNIGKEVKPEQALFFITRLGTVKRTAVGEFANIRSNGLKALTLHEDD 650

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++  V+   G   + +   N   + FS   +  M R   GVR    ++G    V    + 
Sbjct: 651 ELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSMGRTAAGVRGIRLREGDYV-VGSDLLI 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G   +  + + Y +        +  RGG G        ++G    
Sbjct: 710 PGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKNGPLAG 755



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 14/202 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E     I+  G ++              L AL   E D L   L       I + + +G
Sbjct: 612 PEQALFFITRLGTVKRTAVGEFANIRSNGLKALTLHEDDELSNVLMTDGQQNIFIGTHNG 671

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            A +     + S       ++  I L     +V + +     ++LV+S KG       S+
Sbjct: 672 YAVSFSETAVRSMGRTAAGVRG-IRLREGDYVVGSDLLIPGQEILVISEKGYGKRTAVSD 730

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R GK     +  EK   +  +  VTG+  + ++ +   L+ F +  + +  R   
Sbjct: 731 YPIKGRGGKGVKTANITEKNGPLAGIAAVTGEEDILLITDTGVLIRFKVANVSQTGRATL 790

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GVRL    D   + V      E
Sbjct: 791 GVRLIRVDDE--AKVATMATVE 810


>gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf. novicida Fx1]
          Length = 868

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/798 (32%), Positives = 418/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+   +    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDINELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    GD  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGDKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGDKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK      +   +     L      + + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGNEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGNEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           + KG       S +    R   G   +K+ ++ K+  +  V  + V
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAV 812


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/757 (36%), Positives = 446/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D P+ S+++L E+I GPDFPT   I+  R+ + + Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW  E        +V+T++P+QV  +R++E+IA+ +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARWIREN-----GEVVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA R+  + RR   R+  +  R+ +L+GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 355 EWLAFRKTTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKPKAELMARFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +AIL L+LR L KLEE +I+ E D L AE++++ ++L S  +    I  E+ + 
Sbjct: 415 LSAEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDELQAILGSEDRLRELIKTELEQD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E     +A  +  ++  +P+TVV+S++GW+R+ K H +D + 
Sbjct: 475 AETFGD-----DRRSPIVEREE-ARAFSETDLVSNDPVTVVLSDKGWVRAAKGHDIDPAG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A       + + L + G+AY+L A +L S RG GE +   I+       
Sbjct: 529 LSYKSGDRFALAAKGRNNQQAIFLDSTGRAYSLMAHSLPSARGQGEPLTGRINPPSGATF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +   K L+V+  G  F+   +++I+  R GK  + V    ++   V +      
Sbjct: 589 SGLLMGNPERKTLLVTDGGYGFVTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETAST 648

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
            ++A +    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLAAISNEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFGEEDQLE- 707

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           + +  R       DL  +LG+RG  G  +P+G  R  
Sbjct: 708 VKAGKRKLGLRFGDLEHYLGERGRRGHKLPRGLQRVD 744


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/783 (29%), Positives = 398/783 (50%), Gaps = 43/783 (5%)

Query: 1   MGVDNISNSNTL----VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  DN ++ ++     +   V+ + +   ++  Y+ YA+S I  RA+P++RDG KPVHRR
Sbjct: 1   MSDDNNNDGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM + G      + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQG
Sbjct: 61  ILYAMFDNGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D  AA RYTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL
Sbjct: 121 NFGSRGDDGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGII 232
            NG+ GIAVGMAT+IP HN++E+ +A    +DNP+     +++ ++E I GPDFPT   I
Sbjct: 181 MNGSGGIAVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQI 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  +  I E+Y  GRG  R+R    +E+ G     IV+TE+PYQV   R+I  IA+ +  
Sbjct: 241 VGDK-GIKEAYTTGRGSIRMRGVTSIEQEGT-RQSIVITELPYQVNPDRMIANIADQVKD 298

Query: 293 KRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            R+  +  I DES       ++    R   P +++ +++  S ++T F  NM  +  G V
Sbjct: 299 GRLQGIASIDDESDLKWGMRIVVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDG-V 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE- 410
           P+ + +D ++  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR   
Sbjct: 358 PRTLRIDQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSA 417

Query: 411 --DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             D  +  ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L + 
Sbjct: 418 TVDTARTGLMGLLDIDEIQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDILANP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +Q   +  E+ EV E +        RRT       A+    ++ +I +E + V I++ G
Sbjct: 478 DRQRAIVKEELGEVVEKYGD-----DRRTQIV---AAEGDVTEEDLIARENVVVTITSTG 529

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         ++ +     +     K+ D ++      T D IL  +  G+ Y L A  L
Sbjct: 530 YAKRTKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWILFFTNKGRVYRLKAYEL 589

Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L++    + I        Y  +  L++ +S+G        +  +  
Sbjct: 590 PEATRAARGQHVANLLEFQPEERIAEVLQIQSYQDSPYLVLATSEGKVKKSRLEDYESAR 649

Query: 636 RKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQS 691
             G   + +   + +      +  D + +V E  + + F+     +  M R   GV+   
Sbjct: 650 SAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTASDDALRPMGRATAGVQGMR 709

Query: 692 YK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +K D  +  ++  +    L    + G  + +           RGG+G L  K  P+ G  
Sbjct: 710 FKGDDKLLSMVVVEEEHNLLVATTGG--FGKKTKLSEYTPQNRGGMGVLTLKYDPKRGPL 767

Query: 751 LSS 753
           + +
Sbjct: 768 MGA 770



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        LQ    +  P  V+ ++ G ++  +    + +      A++ +EGDSL  A
Sbjct: 608 QPEERIAEVLQIQSYQDSPYLVLATSEGKVKKSRLEDYESARSAGLIAINLREGDSLIGA 667

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S  G+A    A +  + R  G A   +  +    +  +++  V +   
Sbjct: 668 RLCSADDDLLLVSERGQAIRFTASD-DALRPMGRATAGVQGMRFKGDDKLLSMVVVEEEH 726

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            LLV ++ G     + SE     R G   L +  + K    M  +V    D +  V    
Sbjct: 727 NLLVATTGGFGKKTKLSEYTPQNRGGMGVLTLKYDPKRGPLMGALVVDNDDEIFAVTSAG 786

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            ++  ++++I   SR  KGVRL +  DG     I   + +
Sbjct: 787 DIIRTNVNEIRATSRATKGVRLVNLADGVELLAIDRNVED 826



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + FK  D L   +       +L+ +T G                G  
Sbjct: 695 LRPMGRATAGVQGMRFKGDDKLLSMVVVEEEHNLLVATTGGFGKKTKLSEYTPQNRGGMG 754

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  L        ++ A V D+  ++  V+S G+      +EI A +R  KG   + ++  
Sbjct: 755 VLTLKYDPKRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADG 814

Query: 648 EKMKLVVKVTGDH 660
            ++  + +   D 
Sbjct: 815 VELLAIDRNVEDE 827


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/791 (33%), Positives = 418/791 (52%), Gaps = 66/791 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++VA  +L  +D++ VDF   Y+E +  PVV PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+DNPE+S+++++E I GPDFPT  I +  R  I++ YR G+G   +RA
Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAI-INGRAGIIQGYRTGKGRVVIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +       I++ E+PYQV K+RL+E+IAEL+  K+I  +  +RDES +    V+
Sbjct: 245 RTEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   D+++ +++  + M+  F +NM  L  G+ P+ + L  IL+ ++ HRREV+ 
Sbjct: 305 IEIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420
           RR+ F ++    R  +L+GL IA  NIDE+IA+I+    P+                   
Sbjct: 364 RRTLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q  AIL LRL  L  LE+ +I  E + LL 
Sbjct: 424 LERAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLI 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +++  +L S ++    I  E+ E+K  F        RRT   E++ + +    + +I 
Sbjct: 484 LIKELLDILASPERLMQVIRDELLEIKTQFGDE-----RRT---EITASQEDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA + K+ D +   + A T D +L  S 
Sbjct: 536 EENVVVTLSHQGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L A  L   S    G  I  ++ L   ++I        Y     + + +  G  
Sbjct: 596 HGKLYWLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             V  +        G   + +   +++  V    G   + +  +  K++ F   ++    
Sbjct: 656 KKVPLNAFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  +GVR    ++     VI   +     T + +    Y +  +     +  RGG G + 
Sbjct: 716 RTARGVRGIRIEED--QAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVIS 773

Query: 741 PKGFPRSGKFL 751
            +   R+GK +
Sbjct: 774 IQVTERNGKVV 784



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD--KATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +   +     GR       ++  +   A L     ++     + +  G ++ +   
Sbjct: 602 LKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGFYVFMATRNGTVKKVPLN 661

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
              +  S  + A+   E D L        T  I+L +  GK        +         +
Sbjct: 662 AFSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARGV 721

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SS 646
           +  I +  +Q +++  V      +L  +  G     +  E   + R G+  + +     +
Sbjct: 722 RG-IRIEEDQAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERN 780

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
            + ++ V     D   ++ +   L+ F + ++  + R  +GVRL +   G +  V+  + 
Sbjct: 781 GKVVRSVQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGEL--VVGMQK 838

Query: 706 CEGL 709
            E L
Sbjct: 839 IEDL 842



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 18/194 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA ++ E   +       G R                + +   E        
Sbjct: 664 SRPRSNGIIAVDLDENDRLVGVDITDGTR-------DIMLFTDAGKVIRFDESKV----- 711

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               R     +  +  +  +E  ++   + AH    IL  +  G                
Sbjct: 712 ----RPTGRTARGVRGIRIEEDQAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRG 767

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA--FIVEESEIIANTRKGKTFLKV 644
           G+ +  +     N  +V +   + + + ++++ KG    F V E  II    +G   + V
Sbjct: 768 GQGVISIQVTERNGKVVRSVQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINV 827

Query: 645 SSEEKMKLVVKVTG 658
           SS E +  + K+  
Sbjct: 828 SSGELVVGMQKIED 841


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 418/760 (55%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + + T        D+   L  V+ +G     +ESE     + G   L +   +++  V+
Sbjct: 592 GEIVQTIISQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKDGDELINVI 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  G D + +  +    + F+   +  MSR   GVR  + ++G    V   +I +    +
Sbjct: 652 RTNGNDDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREGD-EVVGASRISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 12/209 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         Q    + E     ++ +G ++  K           L AL+ K+GD L 
Sbjct: 589 LDEGEIVQTIISQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +       + S       ++  ++L    ++V A       
Sbjct: 649 NVIRTNGNDDIIIGTKTGYSVRFNESAVRSMSRSATGVRG-VNLREGDEVVGASRISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +      ++  +  V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLATVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            ++  ++  I +  R   GV++       
Sbjct: 768 VIIRTNVASISQTGRATLGVKIMRLDQDA 796



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++ +  G+        +RS+   +  +  ++ +EGD +  A        +L+++  G
Sbjct: 657 DDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREGDEVVGASRISDDQEVLVITEKG 716

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                 A    +    G+ I+       N  +      +    ++V++  G       + 
Sbjct: 717 YGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLATVNGDEDIMVITDTGVIIRTNVAS 776

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKV 656
           I    R   G   +++  + K+     V
Sbjct: 777 ISQTGRATLGVKIMRLDQDAKIMTFALV 804


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/815 (32%), Positives = 408/815 (50%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RYPLI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+++Y+ GRG  
Sbjct: 182 IPPHNMTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAI-INGRKGIIDAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  V+    G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRSKAEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +++ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMIECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LT+ Q  AIL+LRL  L  LE  +I +E + 
Sbjct: 420 QAMLEKAGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L S ++    I  E+ E+ E F        RRT     +  +     + 
Sbjct: 480 LIDIIAALLYILRSPERLLEVIKEELNEILENFGDE-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      SA   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVREYADDKYIIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G                G   + +   +++  V    G + + +  +  K++ F+     
Sbjct: 652 GTVKKTALKAYSNPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRD 711

Query: 676 DQ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +                +  M R   GVR    +DG    V      E    +      
Sbjct: 712 SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQ-KVVSLIVPKENGAILTVTENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +        R   G +  K   R+G  + +
Sbjct: 771 YGKRTSLEEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 36/258 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 EHITAILPVREYADDKYIIMATSHGTVKKTALKAYSNPRANGIIAVNLKDGDELIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAG-----------------NLLSGRGHGEAIQLL--IDLNH 598
              + I+L S  GK                         L++ R  G     +  I L  
Sbjct: 688 DGKNDIMLFSDAGKVVRFNEMVRDSETGLVKLDPETNEELVALRPMGRTATGVRGIRLED 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V      +L V+  G        E  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKENGAILTVTENGYGKRTSLEEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----KICEGL 709
               D + ++ +   L+      +  + R  +GV +    +G    V+      +I E  
Sbjct: 808 VGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRIVEG--EKVVGLQRIDEIHEDE 865

Query: 710 TWIDSAGRSYNRSENDLL 727
             +D  G       +D  
Sbjct: 866 VELDEEGNPIILEGDDAE 883


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F     + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 359 VTRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 E-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G       ++     + G   L +  E+++  V 
Sbjct: 592 GETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    + +    +
Sbjct: 652 LTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDGD-QVVGAGVVSDNDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAG 750



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          +    ++      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRG-VNLRDGDQVVGAGVVSDND 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
           ++LV++ KG       SE     R GK     +  EK   +  ++ V G + + ++    
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAGLMTVNGQEDLMIITNTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  S+  I +  R   GV++        + ++ F   E
Sbjct: 768 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTTVE 805



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE--IFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I  E    ++  +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINVEQDHSQDSYLFFTTRLG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW--------IRS 532
             +RT+  + +   +  L+   ++ E               ++ +  G+        +R+
Sbjct: 619 VVKRTSVADFANIRQNGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ ++GD +  A      D +L+++  G      A    +    G+ I+ 
Sbjct: 679 MSRIATGVRGVNLRDGDQVVGAGVVSDNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      +    L+++++ G       + I    R   G   +++    ++
Sbjct: 739 ANITEKNGPLAGLMTVNGQEDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFTTVEADD 808


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/814 (32%), Positives = 412/814 (50%), Gaps = 88/814 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G  F   F+KS
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 131 LAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   GRG   +R R
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +    I+VTEIPYQV K+R++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 250 VHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIE 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + ++T F +N   L+ G  P++M L  I+  ++A R EV+ RR
Sbjct: 310 IKRDAIAEVVLAQLYRFTPLQTSFGVNSLALN-GGRPEMMTLRDIIVAFIAFREEVITRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  +L GL IA  NIDE+I +IR    P                      
Sbjct: 369 TIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLIQ 428

Query: 414 ------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 + +    + L+E Q  AIL+LRL  L  LE  +I  EL  +  + E    +L+S
Sbjct: 429 LIDEPGRAIEDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSS 488

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             + +  +  E+ E++E F+       RRTT  E    +     + +I +E + V ++N 
Sbjct: 489 RPRLFEVMRGELMEIREQFATP-----RRTTIEE---NEFEADIEDLIAREDMVVTVTNT 540

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S ++ K+ D L      +T   +L  S+ G AY L    
Sbjct: 541 GYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKVYR 600

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G  +  G+A+  L+ L+  + I T               ++ V+SKG+      S+ 
Sbjct: 601 LPLGNPQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDF 660

Query: 632 IANTRKGKTFLKVSSEEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGV 687
                 GK  +K+   E++  V       D V +     K + F +  + E  SR   GV
Sbjct: 661 TEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTGV 720

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWIDSAGRSY 719
           R       G  +VI   I                             E    +      +
Sbjct: 721 RGIRL--DGEDEVISMSILRHTDYDSETRDAFLKGDLPAEQMEKMGAEQQFVLTVTENGF 778

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +  RGG G        ++G  ++S
Sbjct: 779 GKRTSAFEYRITGRGGSGIANLDMTAKTGTVVAS 812



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 81/272 (29%), Gaps = 46/272 (16%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGW 529
           IA +++  +         G+       +   +  +    + E E        + ++++G 
Sbjct: 592 IAYKLKVYRLPLGNPQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGD 651

Query: 530 IRSLKSHSV------DLSALHFKEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLS 582
           +R                A+   EG+ L         TD +LL +  GKA   P  ++  
Sbjct: 652 VRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVRE 711

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---------------------------LL 615
            +         I L+   ++++  +   T                             +L
Sbjct: 712 FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPAEQMEKMGAEQQFVL 771

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLL 671
            V+  G        E     R G     +    K   VV        D + +V +  KL+
Sbjct: 772 TVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGTVVASFPVNHEDDIMLVSDGGKLI 831

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +D I    R  +GV L   +      V+ 
Sbjct: 832 RMPVDDIRIAGRKTQGVTL--LRTAENERVVS 861


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/794 (33%), Positives = 418/794 (52%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+
Sbjct: 4   IAKEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  ++++ VD+ D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  LALI+NP++ ++ L+EYI GPDFPTG   +  R+ IVE+YR GRG   +
Sbjct: 184 PHNLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGA-YINGRKGIVEAYRTGRGRIYM 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+   V +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++   
Sbjct: 243 RAKADVVVDEKTGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R    D+L+ +++  + +ET F +N   L  G+ P+V+ L  +L+ ++ HRREV
Sbjct: 303 IAIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQ-PKVLNLKEMLEAFIRHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP------------- 415
           + RR+ F ++   +R  IL+GL +A  NIDE+I +IR+     + K              
Sbjct: 362 VTRRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVS 421

Query: 416 ---------------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                V   R+ L+  Q   IL++RL+ L  LE  ++  E   +
Sbjct: 422 AMLERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           + +  +   +LNS ++    I  E+ EVK+ F  +           E+  +      + +
Sbjct: 482 IDDIGEFLRILNSYERLMEVIREELMEVKDEFGDARK--------TEIMTSRLDLSMEDL 533

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V IS+ G+ ++         K      SA   K+ D ++  L A + D IL  
Sbjct: 534 ITEEDMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           ST GK Y L    +   S    G  +  L+ L   + +        +D    + + ++ G
Sbjct: 594 STFGKVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDYFIFMATASG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                           G   L +   + +  V    G+  V ++ +  K++ F  + +  
Sbjct: 654 TVKKTSLDAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRP 713

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           M R  +GVR  S +DG     +     EG   + ++ R Y +           RG  G +
Sbjct: 714 MGRTARGVRGISLEDGQSVISLIVPQEEGF-VLTASERGYGKRTVMTEFPTKGRGTKGVI 772

Query: 740 VPKGFPRSGKFLSS 753
                 R+GK + +
Sbjct: 773 AMVSNDRNGKLVGA 786



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     + +    + +  G ++        +  S  L AL   EGD L   
Sbjct: 626 EAEERVTAILPIRNFDPDYFIFMATASGTVKKTSLDAFSRPRSSGLIALSLDEGDHLVGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++LLS  GK       ++         ++  I L   Q +++  V      +
Sbjct: 686 ACTDGEREVMLLSDAGKVVRFKEEHVRPMGRTARGVRG-ISLEDGQSVISLIVPQEEGFV 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKL 670
           L  S +G       +E     R  K  + + S ++   +    +V  GD V ++ +   L
Sbjct: 745 LTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRNGKLVGAKQVFNGDEVMLISDQGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   +D+I  + R  +GV+L    D 
Sbjct: 805 VRTRVDEISSLGRNTQGVKLIRVADD 830


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 413/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEE-KGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + + +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++     V    + E    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDD-KAVSMEVVLEDEALLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 139/435 (31%), Gaps = 26/435 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-ITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
              +L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSIILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         + I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L  +   V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLEDEALLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVIC 702
           +L    +      I 
Sbjct: 786 KLMRTSEEEKIVAIA 800


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 413/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N ++SI  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV KS+LIE +A L+  K+I  + DIRDES      
Sbjct: 241 IRAKAEIEEE-KGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQV+ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQVLNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + + +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  LI + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++     V    + E    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDD-KAVSMEVVLEDEALLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 139/435 (31%), Gaps = 26/435 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-ITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
              +L   +  + +   A EI E     +K T++        E +   +  +    I+  
Sbjct: 550 HSIILFFTNRGKVYKLKAYEIPEAGRT-AKGTNIVN--LIPIENNEKIQTVIGLKDIDDM 606

Query: 519 PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V+ +  G I+  +           L+A++ +E D L         + I++++ +G  
Sbjct: 607 KHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNGYC 666

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++         ++  I L  +   V+  V      LL +S  G     +  E  
Sbjct: 667 IRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLEDEALLSISENGFGKRTDIEEYP 725

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            + R GK  +     +K   +V        D + +V      +  ++ +I + SR   GV
Sbjct: 726 IHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGV 785

Query: 688 RLQSYKDGGISDVIC 702
           +L    +      I 
Sbjct: 786 KLMRTSEEEKIVAIA 800


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/822 (31%), Positives = 408/822 (49%), Gaps = 90/822 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLAHGILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NPE+SI +L++YI GPDFPT  I +  ++ I ++Y  GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAI-INGKKGIEQAYLTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +       I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARAEIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L   + P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQ-PKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  +L+GL IA  NID II +IRN   P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGN 419

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VKAMLDKAGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +LL    ++  +L + ++    I  E+ E+K  +        RRT   E++ A      
Sbjct: 480 QSLLDLIAELLHILATPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISL 531

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 532 EDLITEENVVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTI 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  ST G+ Y L    L   S    G+ I  L+ L  ++ I        Y     + + +
Sbjct: 592 LCFSTAGRLYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDKYIFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G       +        G   + ++  + +  V    G + + +  +  K++ F   +
Sbjct: 652 AFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAE 711

Query: 678 -------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                                    +  M R   GVR     +G     +     +G   
Sbjct: 712 ETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRVVSLIVPKTDGA-I 770

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      Y +           R   G +  K   R+G  + +
Sbjct: 771 LTVTENGYGKRTLLEDYPAKSRATQGVVSIKVSERNGAVVGA 812



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 37/249 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      A L      ++    + +  G ++     +          A++  EGDSL   
Sbjct: 627 EADERITAILPVREYAEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                ++ I+L +  GK                                  R  G     
Sbjct: 687 DVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATG 746

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-- 646
           +  I +   Q +V+  V  +   +L V+  G        +  A +R   G   +KVS   
Sbjct: 747 VRGIKMPEGQRVVSLIVPKTDGAILTVTENGYGKRTLLEDYPAKSRATQGVVSIKVSERN 806

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V     D + ++     L+   ++++  + R  +GV L    D     V+  + 
Sbjct: 807 GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDE--EQVVGLQR 864

Query: 706 CEGLTWIDS 714
            E +   +S
Sbjct: 865 IEEIEVTES 873


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 402/751 (53%), Gaps = 31/751 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGA-PRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
            RRT   E ++       + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSEAAK---DLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L   S    G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +  T       +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVP--PIAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            Y +           RGG G        + G
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKG 824



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 22/240 (9%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++         R T        E      A +       +   +  +  G ++      
Sbjct: 646 KVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDL 705

Query: 538 VDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            D +      A+  K+ D L         +++L++S+ GKA     G +   R  G    
Sbjct: 706 YDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEV---RAMGRDTM 762

Query: 592 LL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE 647
            +  +++     ++   +      L V++ KG       +E   + R G+    + ++ +
Sbjct: 763 GVRGMNVPPIAKVLGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEK 822

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + +  V+K+    D + ++ E    +   +  I E+ R  +GV +    D      +   
Sbjct: 823 KGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAIS 882


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/787 (31%), Positives = 407/787 (51%), Gaps = 47/787 (5%)

Query: 1   MGVD---NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D       +  ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADDITPATPEAGGIIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+    L+E I GPDFPTG ++V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D+++ F  NM  L  G VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVAHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VDIARTGLMELLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +        R+T        D     + +I +E I V +S  G+
Sbjct: 478 RQRGIVSAELAAIVEKYGD-----DRKTMLV---PYDGDMSIEDLIAEEDIVVTVSRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 VKRTKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 --SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    YD+   L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKAGLVKKTSLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V+ D  + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASDDTLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G   +++   +    T++  +    Y +        +  RGG+G    K    
Sbjct: 710 KGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGSLVGA 774



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   A    L     +  P  V+ +  G ++      
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKAGLVKKTSLKD 643

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A        +LL+S   ++    A +  + R  
Sbjct: 644 YDSPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASD-DTLRPM 702

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 703 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 762

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +  +  ++   ++ + E  R   GV+L +   G    
Sbjct: 763 KIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINL--GKRDA 820

Query: 700 VICFK 704
           V+   
Sbjct: 821 VVGIA 825



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A   P          G  
Sbjct: 699 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLG 758

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       + +    R   G   + +   
Sbjct: 759 IKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKR 818

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 819 DAVVGIAR 826


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 414/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + + +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++     V    + E    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDD-KAVSMEVVLEDEALLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 30/437 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-ITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIVNIIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L+A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLEDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVIC 702
           GV+L    +      I 
Sbjct: 784 GVKLMRTSEEEKIVAIA 800



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 10/165 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   M +     ++++  G+        +R +   +  +  +  +E D        
Sbjct: 642 DDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV 701

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + +L +S +G             R  G+ +      +    IV A       +L++V
Sbjct: 702 LEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLV 761

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +S   A  +  SEI   +R   G   ++ S EEK+  + K+  + 
Sbjct: 762 NSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/760 (31%), Positives = 414/760 (54%), Gaps = 30/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E  +  V +   +++ Y+ YA+S I  RA+PD+RDG KPVHRRII++M  +GL     
Sbjct: 2   LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F  RY L+ G GNFG++DGD AAA RY
Sbjct: 62  YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M++++  +++ ++++ VDF   ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I
Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  + LI+N +++I  L+  I GPDFPT G+IV +R  I E+Y  GRG   
Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE  +G   I+VTEIPYQV K+RLIE +A L+  K+I  + D+RDES  D   
Sbjct: 241 IRAKAEIEEE-KGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +P++++  ++  + ++  F + M  L   + PQ++ L  IL  ++  ++EV
Sbjct: 300 IVIELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQ-PQILNLKEILVNYVEFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R  IL+GL IA  +IDE+I +IR   N  + K  +++ F+L+E Q 
Sbjct: 359 IRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I+ E   L+ +      +L+  +   + I  E+ E+K  +  
Sbjct: 419 QAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E+ + +     + +IE + + + +++ G+I+          K     +
Sbjct: 479 ERK--------TEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   K+ D ++      T   IL  +  GK Y L A  +        G  I  +I + +
Sbjct: 531 QATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIEN 590

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I T       D     ++ +  G     E  +  +  + G   + +  ++++  V  
Sbjct: 591 NEKIQTVIGLKDIDDMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKM 650

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +V +N   + F+ + +  M R   GV+  + ++     V    + E    + 
Sbjct: 651 TKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDD-KAVSMEVVLEDEALLS 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   + +  +     + +RGG G +  K   ++G  + +
Sbjct: 710 ISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGA 749



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 30/437 (6%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN--VL 346
           L  A  +  L    D   E ++++   KN +   + LM +  +               + 
Sbjct: 371 LARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQAQAILDMKLQRLT 430

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            + R         ++++    R  +        +   +      K        I +    
Sbjct: 431 GLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHD 490

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI----- 461
           I  ED  +   V   +LT       L++   S +K     I++         E +     
Sbjct: 491 IDIEDLIEDKKVI-ITLTHGGYIKRLDMDTYSSQKRGGKGIQATSTKQDDFIENMFVTST 549

Query: 462 -DSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++L   +  + +   A EI E     +  T  G        +   +K      + + +
Sbjct: 550 HSTILFFTNRGKVYKLKAYEIPE-----AGRTAKGTNIVNIIPIENNEKIQTVIGLKDID 604

Query: 519 PI--TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   V+ +  G I+  +           L+A++ +E D L         + I++++ +G
Sbjct: 605 DMKHFVMCTRNGIIKKTEIKKYSSIRKGGLNAINLREDDELIDVKMTKGNNEIIIVTQNG 664

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++         ++  I L  +   V+  V      LL +S  G     +  E
Sbjct: 665 YCIRFNEEDVRPMGRVATGVKG-ITLREDDKAVSMEVVLEDEALLSISENGFGKRTDIEE 723

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
              + R GK  +     +K   +V        D + +V      +  ++ +I + SR   
Sbjct: 724 YPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLVNSGDVAIRINVSEISKTSRNAM 783

Query: 686 GVRLQSYKDGGISDVIC 702
           GV+L    +      I 
Sbjct: 784 GVKLMRTSEEEKIVAIA 800



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 10/165 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   M +     ++++  G+        +R +   +  +  +  +E D        
Sbjct: 642 DDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGRVATGVKGITLREDDKAVSMEVV 701

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + +L +S +G             R  G+ +      +    IV A       +L++V
Sbjct: 702 LEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFIKEDDELMLV 761

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +S   A  +  SEI   +R   G   ++ S EEK+  + K+  + 
Sbjct: 762 NSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 397/762 (52%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +   S    G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++  G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G +      ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG-IRLRDHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           +S KG        E     R GK     +  EK   +  V  V G + + V+ ++  ++ 
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIR 774

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGG 696
           F+I  + +  R   GVRL    D  
Sbjct: 775 FNIQNVSQTGRATLGVRLIRVDDDA 799



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           +   ++ ++ G+        +RS+   +  +  +  ++ D +  +        + ++S  
Sbjct: 659 QDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDILKPDSEVFVISEK 718

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A         G+ I+       N  +      D T  +LV++  G        
Sbjct: 719 GYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIRFNIQ 778

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            +    R   G   ++V  + K+  + KV
Sbjct: 779 NVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 419/760 (55%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     ++R  IL+GLLIA  ++DE+I+IIRN +     +  ++SRF+L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LL     +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          +     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +  +T D I  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + + T        D+   L  V+ +G     +ESE     + G   L +   +++  V+
Sbjct: 592 GETVQTIISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELINVI 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  G D + +  +    + F+   +  MSR   GVR  + ++G    +   +I +    +
Sbjct: 652 RTNGNDDIIIGTKTGYSVRFNESDVRSMSRSATGVRGVNLREGD-EVIGASRITDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 12/209 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         ++   + E     ++ +G ++  K           L AL+ KEGD L 
Sbjct: 589 LDEGETVQTIISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +      ++ S       ++  ++L    +++ A       
Sbjct: 649 NVIRTNGNDDIIIGTKTGYSVRFNESDVRSMSRSATGVRG-VNLREGDEVIGASRITDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +      ++  +V V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLVTVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            ++  S+  I +  R   GV++       
Sbjct: 768 VMIRTSVADISQTGRATLGVKIMRLDQDA 796



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 83/246 (33%), Gaps = 27/246 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
           R+  L+  E  +       L      +   L+ G+     I+ +  +  E +    +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETVQTIISEKGSDDNENYLFFVTRQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E S   +  L+   +++                ++ +  G+        +RS
Sbjct: 619 VVKRTKESEFSNIRQNGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRS 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+ 
Sbjct: 679 MSRSATGVRGVNLREGDEVIGASRITDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      +    ++V++  G       ++I    R   G   +++  + K+
Sbjct: 739 ANITEKNGQLAGLVTVNGDEDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKI 798

Query: 651 KLVVKV 656
             +  V
Sbjct: 799 MTLALV 804


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/786 (32%), Positives = 401/786 (51%), Gaps = 61/786 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   + + YL Y++S I  RA+PD+RDG KPVHRR+++AM   GL +   + K A +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+ K HPHGD SVYD+LVRLAQ +  RYPLI GQGNFG++DGD AAAYRYTE R+ +
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +++ +L  +D+D VD+   ++E   EP V P++FPNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ LI+NP+ ++  L+ +I GPDFPT GI +  R+ I  +Y  GRG  +VRAR  V
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGI-IRGRDGIRAAYEKGRGTIQVRARTVV 265

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E   +     IVVTEIPYQV K++L+E IAEL+  KRI  + D+RDES+ +   ++    
Sbjct: 266 EIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELK 325

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++ +++  + M+  F + M  +  G  P+V+ L  +L+ ++AHRR+V+ RR+ 
Sbjct: 326 RDALAQVVLNNLYAHTQMQMGFGVIMLAI-DGGQPRVLTLKEMLERFVAHRRDVVTRRTR 384

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  IL G  IA  +IDEII +I+     D  +  M++RF+L+E Q  AIL +
Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L+ L  LE  +I  EL  +     ++  +L S K     I  E+REVK++F+       
Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADE----- 499

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+++          K      +    +
Sbjct: 500 RRT---EIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D L+    A T   +L+ S  GK Y L    +        G+ I  L+ L   + +  
Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAA 616

Query: 605 AFVY------------------------------DSTCKLLVVSSKGNAFIVEESEIIAN 634
                                                  + +V+ KG        +    
Sbjct: 617 ILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVTRKGLIKKTRLEQFARP 676

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
              G   L +   +++       G  H+ +       + F    +  M R   GV+  + 
Sbjct: 677 RAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESDVRPMGRTAYGVKGITL 736

Query: 693 KDGGIS-----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           ++G             +  +  T +      Y +        +  RGG G +  K   R+
Sbjct: 737 EEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKTTERN 796

Query: 748 GKFLSS 753
           G  +++
Sbjct: 797 GPVVAA 802



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 28/218 (12%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTD---RILLLSTDGK 571
             +++ +G I+        +  +  +  L  +EGD L   + A  TD    ILL +  G 
Sbjct: 656 VFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDEL---ITARLTDGGGHILLSTARGM 712

Query: 572 AYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD------STCKLLVVSSKGNA 623
           A      ++   R  G     +  I L    ++V                +L V++ G  
Sbjct: 713 AIRFEESDV---RPMGRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYG 769

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIP 679
              E +E    TR GK  + + + E+   VV        + V ++     L+      I 
Sbjct: 770 KRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGIS 829

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + R  +GVRL + +      V   ++ E     + AG
Sbjct: 830 VIGRNTQGVRLITLESKEEQVVGVARVAETTPEAEEAG 867


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/825 (33%), Positives = 400/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME  F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY---------------------------------KDGGISDVICFKICEGL 709
              GVR                                      DGG S VI       +
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNV 775

Query: 710 T-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 50/268 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVIC---FKICEGLTWIDSAG 716
              G     +      + E    +D AG
Sbjct: 861 LSKGEKLQAVERLDASLDEVDEVVDEAG 888


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/774 (32%), Positives = 420/774 (54%), Gaps = 36/774 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   N +  +E+ +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  
Sbjct: 3   EETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMQG 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL      KKSAR+VGEV+GK HPHGD SVYD++VR+AQP+  RY LI GQGNFG+IDG
Sbjct: 63  LGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+ ++AE +L  +++D VDFR  +++   EP V P++ PNLL NG+SGI
Sbjct: 123 DGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSSGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+I  HN+ E+ +A +A ID+ EI+I+ L++++  PDFPTGGI +   E + E++
Sbjct: 183 AVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGI-IYGYEGVREAF 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +E        I+VTEIPYQV K+++IE+ AEL+  K+I  + +IRD
Sbjct: 242 ETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   +++   R  +  +++ +++  + ++T F +N   L     P ++ L  ++  
Sbjct: 302 ESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALV-HGRPMLLNLKDMIVH 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I++IRN    D+ +  ++S+
Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q  AIL++ LR L  LE  +IK E  +L+ + E + S+L     + + I  E+ 
Sbjct: 421 FGLSDIQARAILDMTLRRLTGLERDKIKEEYADLMKQIEYLKSVLADESLRMSIIKEELV 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           EVKE +        RRT   E+  +    + +  IE E + + IS+ G+I+         
Sbjct: 481 EVKEAYGDE-----RRT---EIVHSAAELMTEDFIEDENVVITISHEGYIKRTPLTEYRT 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
                      + ++ D ++    A   + +L  +  GK Y L    +   S    G AI
Sbjct: 533 QGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYWLRVFEIPEGSRTSKGRAI 592

Query: 591 QLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           Q +I+++  + I             Y     +++ + KG                G   +
Sbjct: 593 QNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIKKTTLEAYSRPRSNGINAI 652

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGIS 698
            ++  +++      TG+  + +   + + + F+   +  M R   GVR  S       + 
Sbjct: 653 NINEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPMGRTATGVRGISLAHDKDEVV 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +I     E  T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 713 GMISIDSPES-TVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINITDKTGQLVA 765



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 6/169 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  ++A++  EGD L  A        I++    G+A       +         ++ +
Sbjct: 643 RPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPMGRTATGVRGI 702

Query: 594 IDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
              +   ++V     D     +LVVS KG     +  +     R GK    + ++ +   
Sbjct: 703 SLAHDKDEVVGMISIDSPESTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINITDKTGQ 762

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            + +K     D + ++  +  ++  ++D +  M R   GVRL + K+  
Sbjct: 763 LVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESD 811


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/741 (48%), Positives = 524/741 (70%), Gaps = 4/741 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A L LIDNP+  +  ++ +I GPDFPTGGII++  + I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQVQKS+LIE+IA L+  K+IPL+  IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRL 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++E QV+ I
Sbjct: 361 ITRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTIIMERFKISEIQVEVI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLR+L+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRALQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWKIVKKEIKSVQTQFGLNTI 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GWIR LK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVDLTNQVIDITAFITKEPITIICSKMGWIRLLKGHNTDLSTIKYKEGDAE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           K  + A+TTD+IL++S+ G+ +TL A N+  G+G   +I+LL+D+ +N DI    VY   
Sbjct: 541 KFIIEAYTTDKILIISSKGRFFTLLADNISKGKGTAVSIKLLVDIGNN-DITNILVYKPY 599

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
             LL+ SS G  F+V  +E+IA T+ GK  + +         + V G+ +A + E+R+LL
Sbjct: 600 QLLLLASSIGKGFLVNSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNSIACINESRRLL 659

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           IF+I++IPEM +G+GV LQ +K+  + D+  F   +GL+W D         E +++ +LG
Sbjct: 660 IFNINEIPEMKKGQGVVLQRFKNAKLLDIKIFNKEDGLSWNDGKKIQL---EKNIVAFLG 716

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
           KRG  G+L P GFP++ +F S
Sbjct: 717 KRGSAGTLPPIGFPKNNRFSS 737


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 413/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD+++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/774 (30%), Positives = 397/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   ++DNP+       E  +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE + + +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDILAREERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+ E+ + +        RRT   E+  A      + +I +E + V I++ G+        
Sbjct: 478 ELAEIVDKYGDE-----RRT---EIIPATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L  G     G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 708 LSMSVVHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  +++  V     
Sbjct: 659 QLVSEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 718 FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++   +DQI   SR   GVRL +  D      I   + E 
Sbjct: 778 GVIRTEVDQIRPSSRATMGVRLVNLADDVELLAIDRNVEED 818


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 415/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/758 (34%), Positives = 405/758 (53%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 7   QGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 127 VRMSKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNPE +IE+L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 187 HNMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLIL-GTEEIRKAYTTGRGVIKMR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 246 ARAHIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  IL  +++H+  V+ 
Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKQILGHYISHQENVIT 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F LTE Q  A
Sbjct: 365 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ +    
Sbjct: 425 ILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKDELIEVRDKYGDE- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E++          +I +E + V ++   +I+          +   V +  
Sbjct: 484 ----RRT---EITFDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+ + L A  +     +  G AI  L+ +  ++
Sbjct: 537 MGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     L + + +G       +E     + G   + +  E+++  V    
Sbjct: 597 RITAVIQVREFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLKAVNLDEEDELIGVKFTD 656

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G++ + +     K + F    +  M R  +GVR     DG   +V+   I +  +  +  
Sbjct: 657 GENRIMLGTRLGKAIAFPESGVRSMGRVTRGVRGIMLADG--DEVVAMDILKSDSEVLTV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 715 TEGGYGKRTAAGEYRTQTRGGKGLINMKVTEKTGPVVG 752



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 13/217 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +Q    + +    + + RG ++              L A++  E D L  
Sbjct: 592 VEADERITAVIQVREFKPDRFLFLGTKRGVVKKTPLAEFANIRKSGLKAVNLDEEDELIG 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  +RI+L +  GKA   P   + S       ++ ++ L    ++V   +  S  +
Sbjct: 652 VKFTDGENRIMLGTRLGKAIAFPESGVRSMGRVTRGVRGIM-LADGDEVVAMDILKSDSE 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +L V+  G        E    TR GK  + +   EK   VV +        + ++     
Sbjct: 711 VLTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTEKTGPVVGIRVVREDQELMLITTEGI 770

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFK 704
           ++  S+++I  +SR  +GVRL +  ++  ++ +    
Sbjct: 771 VIRTSVNEISRISRNTQGVRLMTIAENDRVASMATMN 807


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/777 (30%), Positives = 388/777 (49%), Gaps = 38/777 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +I+       + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM 
Sbjct: 1   MTDITLPPESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + KSAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+T +A  +L+ +D + VDF   Y+ +  EPVV PS+ PN+L NG++G
Sbjct: 121 NDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    +DN +   E      +E I GPDFPT G+IV   + 
Sbjct: 181 IAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIV-GTQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   +I  +
Sbjct: 240 IHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 300 ADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK 414
           D +++ ++ H+ +V+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR   N D  +
Sbjct: 359 DQMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I  +L  + AE      +L+  ++Q   
Sbjct: 419 TGLMELLDIDEIQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDILDKPERQRAI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+ E+ E +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 479 VRDELAEIVEKYGDE-----RRTQIV---SADGDVADEDLIAREDVVVTITETGYAKRTK 530

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               RS K     +     K+ D +K      T D +L  +  G+ Y   A  L      
Sbjct: 531 TDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEANRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I        Y+    L++ +  G       S+  +N   G   
Sbjct: 591 ARGQHVANLLAFQPDEKIAQIIQIKTYEDAPYLVLATKNGLVKKSRLSDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V    + + FS     +  M R   GV+   +     
Sbjct: 651 VNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPMGRATSGVQGMRFNAE-- 708

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +   G   + +    Y +           RGG G L  +   R G  + +
Sbjct: 709 DELLSLNVVRPGTYLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFDARRGTLVGA 765



 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 14/224 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 603 QPDEKIAQIIQIKTYEDAPYLVLATKNGLVKKSRLSDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S  G++    A +  + R  G A   +  +  N   ++++  V     
Sbjct: 663 VLCSADDDLLLVSAQGQSIRFSATD-EALRPMGRATSGVQGMRFNAEDELLSLNVVRPGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E  A  R GK  L +  + +   +   + V  D     +    
Sbjct: 722 YLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFDARRGTLVGALIVDDDDELYAITSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++  + +Q+ +  R  KGVRL +  +G     I     E    
Sbjct: 782 GVIRTAANQVRKAGRQTKGVRLMNLGEGDTLLAIARNADEPDAV 825


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           + KG       S +    R   G   +K+ ++ K+  +  V  + V
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAV 812


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/825 (32%), Positives = 401/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   I+VTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY----------------------KDGGISDVI---------CFKICEG--- 708
              GVR                          +   + DV+           ++ +    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGADEEIEADDVDDVVETTDGAETAVIEVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 75/265 (28%), Gaps = 47/265 (17%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGADEEIEADDVDDVVETTDGAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVICFKICEGLTWIDSAG 716
              G     +           D AG
Sbjct: 861 LSKGEKLQAVERLDASLDEVEDVAG 885


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/822 (31%), Positives = 415/822 (50%), Gaps = 89/822 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +  
Sbjct: 2   TDLVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA R
Sbjct: 62  PYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+
Sbjct: 122 YTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA I+N +I+I++L+ +I GPDFPT  + +  R+ I E+Y+ GRG  
Sbjct: 182 IPPHNLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAAL-INGRKGIEEAYKTGRGKI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  +E   +G   I+V EIPYQV K++LIEKIAE +  K+I  +  +RDES +D  
Sbjct: 241 YVRAKAEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRRE
Sbjct: 301 RIVIEIKRDAVGEVVLNNLYALTQMQVTFGINIVAL-DHGQPKLLNLKQLIEAFVLHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------- 419
           V+ RR+ F ++    R  IL+GL IA  N+D II +IR    P+                
Sbjct: 360 VVTRRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHV 419

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + LTE Q  AIL+LRL+ L  L   +I  E   
Sbjct: 420 ADMLAAAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +L S ++    I  E+ +++E F+       RRT   E++ A      + 
Sbjct: 480 LLEAIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D IL 
Sbjct: 532 LIAQEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ ++ 
Sbjct: 592 FSSRGRLYWLKVYQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEEDKFVIMATAG 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G    +  +E       G   L +  E+++  V    G + + +     +++ FS   + 
Sbjct: 652 GVVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVR 711

Query: 680 EMSR-GKGVRLQSYK--------------------------DGGISDVICFKICE-GLTW 711
            M R   GVR                               D  I  V+   + +     
Sbjct: 712 AMGRLATGVRGIKLALTNDLSDDESAVEIEDVSDDNAEETLDLNIDKVVSLVVPKNNGEI 771

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +    Y +           R   G +  K   R+GK +++
Sbjct: 772 LTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 38/231 (16%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L     E++   ++ +  G ++ +      +  S  + AL+ ++ D L     
Sbjct: 627 NERITAILPVTAYEEDKFVIMATAGGVVKKIALTEFSRPRSSGIIALNLRDEDELIGVDI 686

Query: 557 AHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------- 600
              ++ I+L S+ G+        + A   L+    G  + L  DL+ ++           
Sbjct: 687 TDGSNEIMLFSSQGRVVRFSETAVRAMGRLATGVRGIKLALTNDLSDDESAVEIEDVSDD 746

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  V  +  ++L  +  G     +  E    +R  K  + +   E+
Sbjct: 747 NAEETLDLNIDKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSER 806

Query: 650 MKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              VV     +  D + ++ +   L+   + ++  + R  +GVRL    + 
Sbjct: 807 NGKVVAATQVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSED 857


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/778 (30%), Positives = 396/778 (50%), Gaps = 38/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDG 695
             + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   + + 
Sbjct: 649 VAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NI 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               V    + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 708 DDRLVSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +V+  V     
Sbjct: 663 VLCSAGDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLVSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLVSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/752 (37%), Positives = 444/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTEREE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/776 (30%), Positives = 385/776 (49%), Gaps = 50/776 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V  + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G      + K
Sbjct: 69  HRVDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 129 CSRVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTEC 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ + E+ VDF   Y+ +  +P V PS+FPNLL NG++GIAVGMAT IP H
Sbjct: 189 RMAPLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPH 248

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +AA  L+ NPE S E LLE     I GPDFPTG +I+  +  + ++YR GRG  
Sbjct: 249 NLREVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIM-GKRGVEDAYRTGRGSI 307

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VVTE+PYQV    L EKIA L+   ++  + DIRDE S    
Sbjct: 308 TMRAVVNVEEI-QGRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTG 366

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  L  G VP+ +P+   ++ W+ H+ 
Sbjct: 367 QRLVIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPISAFIRYWVEHQI 425

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ FR+   ++R+ IL+GLL A   +DE+IA+IR     D  +  ++    + E 
Sbjct: 426 DVIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGLIELLDIDEI 485

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  + D L ++ +    +L   ++Q   ++ E+ E+ E +
Sbjct: 486 QANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDILAKPERQRQIVSDELAEIVEKY 545

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+        D     + +I +E + V I+  G+++          +    
Sbjct: 546 GD-----DRRSQIV---PFDGDMNMEDLIPEEDVVVTITRGGYVKRTKVSEYRSQRRGGK 597

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +  D +       T D +L  +  G+ Y      L  G     G+ +  L+  
Sbjct: 598 GVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGSRDSKGQHVANLLAF 657

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y  +  LL+ +  G       SE  +    G   + +   +++   
Sbjct: 658 QPGEQIAQVMALRTYADSEYLLLATRNGLVKKTRLSEYDSPRSGGLIAVNLRDGDELVGA 717

Query: 654 -VKVTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI---- 705
            +    D V +V    + + F+     +  M R   GV    +++G   +++   +    
Sbjct: 718 GLATHDDDVLLVSRKGQAVRFAATDDSLRPMGRSTSGVTGMKFREG--DELLSMNVVPKG 775

Query: 706 --------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    E L           +           R  +G  V     R G  + +
Sbjct: 776 ANEVERGADEKLCVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGDLVGA 831



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 25/213 (11%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLS 567
                   ++ +  G ++  +    D      L A++ ++GD L  A  A   D +LL+S
Sbjct: 671 TYADSEYLLLATRNGLVKKTRLSEYDSPRSGGLIAVNLRDGDELVGAGLATHDDDVLLVS 730

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY-----------DSTCKL 614
             G+A    A +  S R  G +   +  +      ++++  V            D    +
Sbjct: 731 RKGQAVRFAATD-DSLRPMGRSTSGVTGMKFREGDELLSMNVVPKGANEVERGADEKLCV 789

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKL 670
            VV   G A      E     R   G     +S    + +  +V    D V VV E  K+
Sbjct: 790 FVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGDLVGALVVENRDEVMVVMEKGKI 849

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  ++ ++ E  R  +GV+  +   G     + 
Sbjct: 850 VRSAVAEVRETGRNTQGVQFATPGKGDSIVAVA 882


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 412/757 (54%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G    ++G  N   + F  + + +M R   GVR    ++     V    + E    +   
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYV-VGAALMKENQEVLVIT 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG G        ++G    
Sbjct: 717 EKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 54/162 (33%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + KG       S +    R   G   +K+ ++ K+  +  V 
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVE 808


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 20  MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 79

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 80  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 140 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 200 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 259 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 318

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 319 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 377

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 378 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 437

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 438 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 497

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 498 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 670

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 671 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 729

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 730 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 765



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 608 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 667

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 668 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 726

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 727 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 786

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 787 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 581 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 637

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 638 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 697

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 698 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 757

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 758 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 817

Query: 651 K 651
            
Sbjct: 818 V 818


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 413/774 (53%), Gaps = 36/774 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++  N +   ++ +  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  
Sbjct: 3   EDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLN 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL+    +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGN+G+IDG
Sbjct: 63  LGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSIDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEAR+ ++AE +L  +++D +D++  +++ + EP V P+KFPNLL NG SGI
Sbjct: 123 DNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGASGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  A +A ID+  I I +L++++ GPDFPTGGI +   E   E+ 
Sbjct: 183 AVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGI-IYGFEGAREAS 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RAR  +E        I+VTEIPYQ+ KS +IE+ AEL+  K++  +  +RD
Sbjct: 242 ETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V++   R  +  +++ ++F  + ++T F +N   L     P ++ L  ++  
Sbjct: 302 ESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALV-HGRPMLLNLKDLIHH 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+    D+ +  +++R
Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L++ Q  AIL++ LR L  LE  +IK+E + L+   + + S+L     +   I  E+ 
Sbjct: 421 FNLSDIQARAILDMTLRRLTGLERDKIKAEYNELMKLIDYLKSILADEGLRMEIIKNELI 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           E+KE +        RRT     S        +  IE E + + IS+ G+I+         
Sbjct: 481 EIKEKYGDE-----RRTQIVHSSA---EMQTEDFIEDENVVITISHEGYIKRTPLTEYRT 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                      + ++ D ++  L A   + +L  +  G+ + L    +  G     G AI
Sbjct: 533 QARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFWLRVFEIPEGTRTSKGRAI 592

Query: 591 QLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           Q +I++   ++I             Y     +++ + KG                G   +
Sbjct: 593 QNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIKKTSLEAYSRPRANGINAI 652

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGIS 698
            ++  + +      TG   + +  ++ + + F+   +  M R   GVR  +   ++  + 
Sbjct: 653 NINEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPMGRTATGVRGITLAGENDEVV 712

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +I     E  T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 713 GMIAIDDAET-TVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTEKTGQLVA 765



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 78/192 (40%), Gaps = 12/192 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ + +G I+     +        ++A++  EGD+L  A     +  I++    G
Sbjct: 620 ENNFIIMCTRKGVIKKTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSG 679

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +     N ++V     D     +LVVS KG     +  
Sbjct: 680 RAIRFNESTVRPMGRTATGVRGITLAGENDEVVGMIAIDDAETTVLVVSEKGYGKRTDIE 739

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    ++  EK   +  +  VT +H + ++  +  ++  S++Q+  M R  
Sbjct: 740 DYRVTNRGGKGVKTINVTEKTGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRAT 799

Query: 686 -GVRLQSYKDGG 696
            GVRL S K+  
Sbjct: 800 QGVRLISLKEND 811


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 411/756 (54%), Gaps = 32/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KSA
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN+
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+ 
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +    
Sbjct: 242 RVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +P +++  ++  + ++T F +N+  +  G  P+V+ L  +++ +L HR+EV+ RRS
Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L+GLLIA  +IDE+IA+IR  +     +  ++ RF L+E Q  AIL+
Sbjct: 360 LFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +    
Sbjct: 420 MRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHF 545
            RRT   E          + +IE EP+ + ++ +G+++ L   S                
Sbjct: 476 -RRTLITEFEET---FNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   D +LL +  G+ Y L    L     +  G  ++ L+ L  ++++ 
Sbjct: 532 KEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVA 591

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                   D    L+  + +G        E     + G   +++   +++  V      D
Sbjct: 592 ALLSVRGLDQEGYLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPED 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAG 716
              +  +  + + F ++++    R  +GV    +K  +  +  ++  K  E +  +  + 
Sbjct: 652 EAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVST 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           R Y +        L  RGG+G +      + G+  +
Sbjct: 712 RGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAA 747



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 19/207 (9%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           ++E   V  + RG ++              L A+  +EGD L     +   D  +L + +
Sbjct: 600 DQEGYLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQE 659

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVE 627
           G+A   P   + +     + +  +        +V+  V        LL VS++G      
Sbjct: 660 GQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVSTRGYGKRTP 719

Query: 628 ESEIIANTRKGKTFL------KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
            SE     R G   +      KV     +  V    G+ + V+      +   + +I + 
Sbjct: 720 LSEYPLQGRGGMGVITYAVSTKVGRLAALLKVR--GGEDLLVLSRRGLAIRTPVAEIRQY 777

Query: 682 SRG-KGVRLQSYKDGGISDVICFKICE 707
           SR   GVR+ +  +    +V    + E
Sbjct: 778 SRATAGVRVMNLPED--DEVASAFVVE 802



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 20/248 (8%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLL--AEKEKIDSLLNSGKQQWN---QIACEIREVKEI 485
           +  L++  L ++        + +LL  AE E++ +LL+            A E   VK  
Sbjct: 558 VYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGYLVFATERGLVKRT 617

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K      +        +     +  A+ + E   ++ +  G         +R+    +
Sbjct: 618 ALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRATGRDT 677

Query: 538 VDLSALHFKE-GDSLKIALHAH---TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +  + FK+  D +   +        D +L +ST G     P          G  +   
Sbjct: 678 QGVIGVRFKKPEDRVVSLVVVKPGEMVD-LLSVSTRGYGKRTPLSEYPLQGRGGMGVITY 736

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +           LLV+S +G A     +EI   +R   G   + +  ++++ 
Sbjct: 737 AVSTKVGRLAALLKVRGGEDLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVA 796

Query: 652 LVVKVTGD 659
               V  +
Sbjct: 797 SAFVVEEE 804


>gi|256830857|ref|YP_003159585.1| DNA gyrase subunit A [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/755 (34%), Positives = 409/755 (54%), Gaps = 30/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+G  +  A+KKSAR+
Sbjct: 3   NISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGDSAAA RYTE RM++
Sbjct: 63  VGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSK 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   L  +++D V+FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 123 LAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L L+D+P++SI++L++YI  PDFPTG + +  +  I E+YR GRG  R+R+R  +
Sbjct: 183 VVDGTLRLLDDPQMSIDELMQYIKAPDFPTGAL-IYGKAGIREAYRTGRGSVRIRSRIEI 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IVV EIPY + KS L+EKIA L+  ++I  + D+RDES      ++    +
Sbjct: 242 EKRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  D+++  +F  + +ET F +NM  +     PQ++ +  +L+ +L +RREV+ RRS F
Sbjct: 302 GVFSDVIVNQLFKFTSLETSFGINMMAVVNN-RPQLLNVKQVLEYFLDYRREVVIRRSRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435
            ++    R  IL+GL IA   IDE++A+IR    P   K  +  RF L+E Q  AIL++R
Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFGLSEIQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   LL + E + S++ + +   + I  E++++++ F+        
Sbjct: 421 LQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATP------ 474

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE 547
           R +       D +   + +I  EP+ + +S  G+         R  +     ++ +   E
Sbjct: 475 RKSEILAHDPD-SIDIEDIIPDEPVVITLSRNGYLKRTSLDNYRQQRRGGTGITGVQVAE 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
            D +   L       + L S  GK Y +    +  G     G+ +  L+ L+ N+ I  A
Sbjct: 534 EDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAAA 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHV 661
                 D        +  G                G   L +  ++++  V +V T D +
Sbjct: 594 MTCRDLDQEKFYFFYTKLGVVKRSSVHLYRNIRAVGLIALGMRDDDELIGVREVETNDEM 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLTWIDSAGRS 718
            +V  +   + F+   +  M R   GV+  + + G   ++ V+  K  +    +  A   
Sbjct: 654 VLVTVDGYSIRFACSDVRAMGRTATGVKGLALRKGDQVVAGVVVNKDTQ-QELLTIAENG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           RGG G +  +  P++GK + +
Sbjct: 713 YGKRTQVEHFRAQSRGGKGIINMRITPKTGKVVGA 747



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 78/201 (38%), Gaps = 14/201 (6%)

Query: 516 EKEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           ++E      +  G ++    H      +V L AL  ++ D L       T D ++L++ D
Sbjct: 600 DQEKFYFFYTKLGVVKRSSVHLYRNIRAVGLIALGMRDDDELIGVREVETNDEMVLVTVD 659

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEE 628
           G +      ++ +       ++ L     +Q +    V   T + LL ++  G     + 
Sbjct: 660 GYSIRFACSDVRAMGRTATGVKGLALRKGDQVVAGVVVNKDTQQELLTIAENGYGKRTQV 719

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
               A +R GK  + +     + + +  ++    D + ++    K++   I  I  + R 
Sbjct: 720 EHFRAQSRGGKGIINMRITPKTGKVVGAMMVYPTDELILLTSGSKIIRIGISDISLVGRA 779

Query: 685 K-GVRLQSYKDGGISDVICFK 704
             GVRL   +D     V+CF 
Sbjct: 780 TQGVRLVRLEDEQT--VVCFD 798


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/788 (32%), Positives = 412/788 (52%), Gaps = 48/788 (6%)

Query: 1   MGVDNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +N  N+     +     V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE +M  ++  +++ +DED VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+ E A   + NPE + E+LL    + I GPDFPTG ++
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALV 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+  
Sbjct: 241 V-GRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKE 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G V
Sbjct: 299 ARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-V 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D
Sbjct: 358 PRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSD 417

Query: 412 K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                +  ++   ++ E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S 
Sbjct: 418 TVEIARGGLMDLLTIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q   I+ E+  + E +        RRT        D     + +I +E I V IS  G
Sbjct: 478 ERQRQIISEELTAIVEKYGD-----DRRTKLI---PFDGDMSIEDLIAEEDIVVTISRGG 529

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++          K     +     K+ D +     + T   +L  +  G+ Y   A  L
Sbjct: 530 YVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYEL 589

Query: 581 L--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L+    ++ I        Y++   L++ +  G        +  +  
Sbjct: 590 PDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAAPYLVLATKSGLVKKTPLKDYDSPR 649

Query: 636 RKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-G 686
             G   + +       E+++     V+  D + ++ +  + + F+     +  M R   G
Sbjct: 650 SGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGRATSG 709

Query: 687 VRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           V+  S+++G   +++   +    T++  +    Y +  N     +  RGG+G    K   
Sbjct: 710 VKGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVE 767

Query: 746 RSGKFLSS 753
             G  + +
Sbjct: 768 DRGSLVGA 775



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKE-----GD 549
           +        L     E  P  V+ +  G ++       D      + A++ +E      D
Sbjct: 608 QPDEQIAQILAIRDYEAAPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGRED 667

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A      D +LL+S   ++    A +  S R  G A   +  +      ++++  V
Sbjct: 668 ELIGAELVSADDDLLLISKKAQSIRFTATD-ESLRPMGRATSGVKGMSFREGDELLSMNV 726

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAV 663
                 +   +  G A      E     R G   K    V     +   + V   D +  
Sbjct: 727 VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDEILA 786

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +  +  ++   ++++ E  R   GV+L +   G    V+   
Sbjct: 787 ITLSGGVIRTRVNEVRETGRDTMGVQLINL--GKRDAVVGIA 826



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 700 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLG 759

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + + ++L ++  G       +E+    R   G   + +   
Sbjct: 760 IKAAKIVEDRGSLVGALVVEESDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKR 819

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 820 DAVVGIAR 827


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKANSREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 414/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP IS+E L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISVEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +        RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDG-----RRTEIIESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+ N+ +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY----------------------KDGGISDVIC-----FKICEGLTW 711
            M R  KGVR                          +D    +V+        + E    
Sbjct: 716 SMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNEDSADLNVVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 39/243 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++ +            L A+   E D+L   
Sbjct: 629 DANETVTAILPLTEFPENHYVFMATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-------------IDLNHNQ- 600
                  +I+L S +GKA      ++ S     + ++ +              ++ +++ 
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRSMGRTAKGVRGMRVSFASSTLSEEDAEVENDES 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNEDSADLNVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CFK 704
             +
Sbjct: 869 SIE 871


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 393/773 (50%), Gaps = 37/773 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDDNGDLYDKIHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALAL----IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +A   L      + E S+E  ++++ GPDFPT G+IV     I +
Sbjct: 181 GMATNIPPHNLKELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIV-GDSGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEEQGS-RQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + +D +
Sbjct: 299 EDESSDRVGMRIVITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRIDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AH+ EV+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LRYYVAHQIEVIVRRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S   +   Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   +  
Sbjct: 418 MSLLDVDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILAKPERQRAIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E++E+ + +        RRT       A      + +I +E + V I++ G+        
Sbjct: 478 ELQEIVDKYGDE-----RRTQIV---AATGDVTDEDLIARENVVVTITSTGYAKRTKVDS 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L   S    G
Sbjct: 530 YKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPEASRTARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V+  D + +  E  + + F+ D   +  M R   GV+   ++D      
Sbjct: 650 NEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRDDDQLLS 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   + EG   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 710 LSV-VQEGGYLLVATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGDSL  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINLNEGDSLIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  +++  V     
Sbjct: 659 ELVSDADDILLTSEQGQAIRFTADD-EQLRPMGRATAGVKGMRFRDDDQLLSLSVVQEGG 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 718 YLLVATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTPKRGKLIGAITVMEDDEIFAITSVG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++   +++I   SR   GVRL +  D     VI   + + 
Sbjct: 778 GVIRTEVNEIRPSSRATMGVRLVNLSDDVELLVIDRNVEDD 818



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/408 (12%), Positives = 129/408 (31%), Gaps = 36/408 (8%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP-KNRSLDPDLLMESIFMLSDMETRFPL 341
           + ++A L   K +  L +I  E A+   I+  P + R++  D L E +    D       
Sbjct: 436 LRRLAALERQKIVDELAEIELEIADYKDILAKPERQRAIVHDELQEIVDKYGDERRT--- 492

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNI 400
            +   +     + +     +   +        +R+        +R  + ++G  +   +I
Sbjct: 493 QIVAATGDVTDEDLIARENVVVTI--TSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDI 550

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL-----L 455
            +   I    D         + L       +  L+   L +         + NL      
Sbjct: 551 VKNFFICSTHD---------WILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPE 601

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  + +     +  +A +   VK+      +  R             + +   ++
Sbjct: 602 EKIAQVIQIQSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINLNEGDSLIGAELV 661

Query: 516 EKEPITVVISNRGW----------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                 ++ S +G           +R +   +  +  + F++ D L           +L+
Sbjct: 662 SDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRDDDQLLSLSVVQEGGYLLV 721

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            ++ G                G  +           ++ A       ++  ++S G    
Sbjct: 722 ATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTPKRGKLIGAITVMEDDEIFAITSVGGVIR 781

Query: 626 VEESEIIANTRK--GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENR 668
            E +EI  ++R   G   + +S + ++ ++   V+  G+  A+     
Sbjct: 782 TEVNEIRPSSRATMGVRLVNLSDDVELLVIDRNVEDDGEEEALAVAKG 829


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 415/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSTDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/758 (32%), Positives = 403/758 (53%), Gaps = 32/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +S+   +++ YL YA+S I  RA+PD+RDG KPVHRR++  M E+  D+   +KK
Sbjct: 5   ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD AAA RYTE 
Sbjct: 65  SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  IL+ +D++ VDF   Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A  ALI+NP++  E+LL+Y+ GPDFPTGGI +  R  I  +Y  GRG  ++RA
Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGI-IYGRAGIHSAYSTGRGIIKIRA 243

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE+  R G   +VVTE+PYQV K+R+IEKIA L+  K I  L  +RDES  +   + 
Sbjct: 244 RIMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +     +++  ++  + +E  F + +  +     P+++ L   L+ ++AHR+ V+ 
Sbjct: 304 MGLKKDEMASIIINKLYKHTQLENSFGIILLSIVNN-RPELLNLKETLQYFIAHRKVVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+G  IA  N+DE++ +IR    P   +  +++RF LT+ Q  A
Sbjct: 363 RRTKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMARFDLTQIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +++ E   L+    +   +L S +     +  E+ EV+  +    
Sbjct: 423 ILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILASDQLVLEIVRDELLEVRTEYVDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E+   +     + MI +E + V IS+RG+I+          +        
Sbjct: 482 ----RRT---EIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNPLTLYHSQRRGGKGKIG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D +     A T + +L  +  G+ Y      +        G+ I  L++L  ++
Sbjct: 535 MGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRAAKGKFISNLLNLAPDE 594

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            + T      ++    +++ +  G     +          G   L +   +++       
Sbjct: 595 QLATVLDVKEFEPGYNIIMATKDGIIKKTDLLAYSNPRSNGIIALSLGEGDQLIAARISD 654

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G     +G    K + F    +  M R  +GV+  +   G    ++  ++   G T    
Sbjct: 655 GTQNVFLGSAFGKSIRFHESDVRAMGRVSRGVKGMTLAAG--DHLVGMEVLTHGKTLFSC 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  +     L KRGG G +  +   R+G  +S
Sbjct: 713 TENGFGKRTSLDEYPLQKRGGKGVITIRTHERNGAVVS 750



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 12/193 (6%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
             E     ++ +  G I+           S  + AL   EGD L  A  +  T  + L S
Sbjct: 604 EFEPGYNIIMATKDGIIKKTDLLAYSNPRSNGIIALSLGEGDQLIAARISDGTQNVFLGS 663

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             GK+      ++ +       ++ +  L     +V   V      L   +  G      
Sbjct: 664 AFGKSIRFHESDVRAMGRVSRGVKGM-TLAAGDHLVGMEVLTHGKTLFSCTENGFGKRTS 722

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  + + + E+   VV +      D + ++ +  K++   +  I  +SR
Sbjct: 723 LDEYPLQKRGGKGVITIRTHERNGAVVSILVVSNDDDLMLMTDAGKIIRMPMGDISVISR 782

Query: 684 GK-GVRLQSYKDG 695
              GVRL   + G
Sbjct: 783 NTMGVRLMGMEPG 795


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/761 (32%), Positives = 410/761 (53%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++ A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKTGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L    +    I  E+ E K  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPGRVIAIIKEELDESKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              TG+   ++G      + F  + I  MSR   GV+  + +DG    V    I +    
Sbjct: 652 FLTTGNEEIIIGTKFGYSVRFKENTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITDDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + + Y +  +        RGG G        ++G    
Sbjct: 711 LIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGHLAG 751



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
               +    V ++ +G ++  K           L AL  +EGD L         + I++ 
Sbjct: 604 DEASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L++S KG     
Sbjct: 664 TKFGYSVRFKENTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITDDQEVLIISEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +  V+G + + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGHLAGIATVSGNEDIMVMTDTGVIIRTAVANISQTG 782

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           R   GV++    +   + ++ F + E    +
Sbjct: 783 RATQGVKVMRLDNS--ARIVTFALVEPEEVV 811



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 77/254 (30%), Gaps = 30/254 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  E   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASENNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTTGNEEIIIG-TKFGYSVRFKENTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L++S  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITDDQEVLIISEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +     + N  +           ++V++  G       + I    R   G   +++ +  
Sbjct: 738 KTANITDKNGHLAGIATVSGNEDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSA 797

Query: 649 KMKLVVKVTGDHVA 662
           ++     V  + V 
Sbjct: 798 RIVTFALVEPEEVV 811


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/751 (35%), Positives = 403/751 (53%), Gaps = 31/751 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGA-PRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDE+I IIR+    K     M  RF LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL +      +L+  +   + I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
            RRT   E ++       + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSEAAK---DLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L   S    G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +  T       +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVP--PIAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            Y +           RGG G        + G
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKG 824



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 22/240 (9%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++         R T        E      A +       +   +  +  G ++      
Sbjct: 646 KVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDL 705

Query: 538 VDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            D +      A+  K+ D L         +++L++S+ GKA     G +   R  G    
Sbjct: 706 YDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEV---RAMGRDTM 762

Query: 592 LL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE 647
            +  +++     ++   +      L V++ KG       +E   + R G+    + ++ +
Sbjct: 763 GVRGMNVPPIAKVLGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEK 822

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + +  V+K+    D + ++ E    +   +  I E+ R  +GV +    D      +   
Sbjct: 823 KGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAIS 882


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 397/762 (52%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+D+P+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F+L++ 
Sbjct: 360 NVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +   S    G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+  G        E       G   L +  ++++  
Sbjct: 593 GAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    +D     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAG 753



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++  G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G +      ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRG-IRLRDHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           +S KG        E     R GK     +  EK   +  V  V G + + V+ ++  ++ 
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIR 774

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGG 696
           F+I  + +  R   GVRL    D  
Sbjct: 775 FNIQNVSQTGRATLGVRLIRVDDDA 799



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           +   ++ ++ G+        +RS+   +  +  +  ++ D +  +        + ++S  
Sbjct: 659 QDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDILKPDSEVFVISEK 718

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G      A         G+ I+       N  +      D T  +LV++  G        
Sbjct: 719 GYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIRFNIQ 778

Query: 630 EIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            +    R   G   ++V  + K+  + KV
Sbjct: 779 NVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 407/764 (53%), Gaps = 36/764 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+  +++   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     FK
Sbjct: 6   QENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKPFK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 66  KSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ + AE +L  +++D VDF+  +++   EP V P+K P LL NG+SGIAVGMAT++P 
Sbjct: 126 ARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNMPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  +A I+N +I+IE+L++YI GPDFPT GI +   + I E+YR GRG   +R
Sbjct: 186 HNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGI-IYGSQGIREAYRTGRGKVLMR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+VTEIPY V K+ LIE+ A+L+  K+I  + DIRDES +D   ++
Sbjct: 245 AKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   R     +++ +++  + ++  F +N   L  G+ PQ + L  +++ ++AHR EVL 
Sbjct: 305 YDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGK-PQTLNLKELIQHFVAHRHEVLL 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           R++ + +    +R+ IL+G LIA  N+D II++IR+    +         + L+E Q  A
Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQTYQLSEQQAKA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRL+ L  +E  +I  E        E++  +L+    Q   I  E+ E+KE +  + 
Sbjct: 424 ILELRLQRLTGMERDKILQEHRETTQLIERLQLILSDRDLQMTLIKNELAELKEQYGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                R T  E +  D     + MI +E + + IS +G+I+              V   +
Sbjct: 483 -----RRTVIEHNTDD--ITLEDMIAEEDMVITISQQGYIKRTPLSEYRIQNRGGVGARS 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              KE D +     A T   +L+ +T GK +      L  G     G AIQ LI +    
Sbjct: 536 TATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGSKSSKGRAIQNLIPIAPGD 595

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            + +           Y ++  +L+ + +G          I     G   +K++  +++  
Sbjct: 596 QVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINPRTNGIQAIKINEGDRLLT 655

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEG 708
           V    GD HV +   + + + F    +  M R   GVR  +    +  +  ++     + 
Sbjct: 656 VKLTKGDNHVIIALRSGRAIHFHERDVRSMGRVSTGVRGITLAGPEDRVVGMVTVYKPD- 714

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +  A +   +        + KRGG G        ++G   +
Sbjct: 715 IELLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITEKTGALAA 758



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 13/212 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L+          ++ + +G I+     +        + A+   EGD L         + +
Sbjct: 606 LKDETYVNSRYILMCTVQGVIKKTPLDAYINPRTNGIQAIKINEGDRLLTVKLTKGDNHV 665

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGN 622
           ++    G+A      ++ S       ++ +        +V    VY    +LLVV+ KG 
Sbjct: 666 IIALRSGRAIHFHERDVRSMGRVSTGVRGITLAGPEDRVVGMVTVYKPDIELLVVAEKGV 725

Query: 623 AFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 ++     R GK    +     +     +      D + ++  +   +   +  +
Sbjct: 726 GKRSAVADYRITKRGGKGVKTLNITEKTGALAAIEAVTDADELLIINTSGIAIRIEVSTL 785

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             M R  +GVRL    +G     I  KI E L
Sbjct: 786 RIMGRNTQGVRLIRLNEGDAITSIA-KITENL 816


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/760 (35%), Positives = 441/760 (58%), Gaps = 27/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +PSHN +E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPSHNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D   
Sbjct: 476 AETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAIG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I +G T +
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATLV 707

Query: 713 -DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +  R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  V+L   +++ ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+    A KK
Sbjct: 7   ENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  SARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   VRA
Sbjct: 187 NLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++ 
Sbjct: 246 KVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R     +++ +++ L+ ++  F  NM  +  G VP+V+ L  IL+ ++ H+REV+ R
Sbjct: 306 DIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREVITR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GL IA  +IDEIIAIIR     D+ K  M+ RF L++ Q  AI
Sbjct: 365 RTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I++E   LL   E +  +L   ++    I  E+ ++ + F     
Sbjct: 425 LDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDK-- 482

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT          +   + +IE+E I + ++N G+I+          +     +  +
Sbjct: 483 ---RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGM 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +K  +   T D +L  + +GK Y      +        G  I  L+ ++ ++ 
Sbjct: 538 GIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSES 597

Query: 602 IVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I          +    L   + +G       +        G   + +  ++++  V+   
Sbjct: 598 IQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTD 657

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           G    ++G  N   + F  + + +M R   GVR    ++   +      K  + +  I  
Sbjct: 658 GQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVIT- 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        +  RGG G        ++G    
Sbjct: 717 -EKGYGKRTKVSEYPVKGRGGKGIKTSNITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 516 EKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       + +G ++           S  L A+  KE D L   L       I++ + +
Sbjct: 609 EEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHN 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G + T     +   R  G     +  I L     +V A +     ++LV++ KG     +
Sbjct: 669 GYSVTFKEEAV---RDMGRTASGVRGIRLREEDYVVGAALMKEDQEVLVITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +  EK   +  +  V+GD  + ++ +   ++ F++  + +  R
Sbjct: 726 VSEYPVKGRGGKGIKTSNITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVRL   +    + V+     E
Sbjct: 786 STLGVRLMKMEAD--TKVVTMAAVE 808



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + + +   ++ ++ G+        +R +   +  +  +  +E D +  A   
Sbjct: 647 DDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALM 706

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L+++  G                G+ I+       N  +           ++++
Sbjct: 707 KEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKNGPLAGLTTVSGDEDIMLI 766

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
           + KG       S +    R   G   +K+ ++ K+  +  V  + V
Sbjct: 767 TDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAV 812


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/825 (32%), Positives = 398/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ + ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            + +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IQGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSYKDG-------------------------------GISDVICFKICEG--- 708
              GVR      G                                 +D     + +    
Sbjct: 716 TATGVRGIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVVDTTDGADAAVIDVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 71/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  +GD+L
Sbjct: 622 IPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDDGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      +LL +++GK        + S       ++  I +   +++V+  V D  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRMPKGEEVVSLIVSDPA 740

Query: 612 -----------------------------------CKLLVVSSKGNAFIVEESEIIANTR 636
                                                +L  +  G       +E     R
Sbjct: 741 GGIEIESDEDAADEVVDTTDGADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
              G     +
Sbjct: 861 LSKGEKLQAV 870


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/752 (37%), Positives = 444/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI      +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEILADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTEREE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    
Sbjct: 531 AGDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKD-----GGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAADAATGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 454/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H+VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/753 (37%), Positives = 444/753 (58%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTERGE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIHGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +PE+S+GKG ++ S         +  ++ +        +T +    R
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSIT-LHFGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  GS +P+G  R  + 
Sbjct: 710 KLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/825 (32%), Positives = 401/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME  F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSYKDG----------------------GISDVI---------CFKICEG--- 708
              GVR      G                       + DV+           ++ +    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGVEEEIEGDEVDDVVEATDGSESAVIEVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGVEEEIEGDEVDDVVEATDGSESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
              G     +
Sbjct: 861 LSKGEKLQAV 870


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/798 (32%), Positives = 419/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+  K+    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDIKELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 77/206 (37%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           ++  +  G       SE     R   G   +  S      +V  +    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAALVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAALVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/823 (31%), Positives = 414/823 (50%), Gaps = 89/823 (10%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  + 
Sbjct: 12  QDNTHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYN 71

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA 
Sbjct: 72  KPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAM 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT
Sbjct: 132 RYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LA I+N EI+I++L+ YI GPDFPT  + +  R+ I E+Y+ GRG 
Sbjct: 192 NIPPHNLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAAL-INGRKGIEEAYKTGRGK 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  VE   +G   IVV EIPYQV K++LIEKIA+L+  K+I  +  I D S +D 
Sbjct: 251 IYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITDLSDKDG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ ++ HRR
Sbjct: 311 MRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVAL-DKGQPKLLNLKQLIEAFVLHRR 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------- 419
           EV+ RR+ + ++    R  IL+GL IA  N+D II +IR    P+               
Sbjct: 370 EVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQPWKLGH 429

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + LTE Q  AIL+LRL+ L  L   +I  E  
Sbjct: 430 VADMLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYQ 489

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL    ++  +L S ++    I  E+ +++E F+       RRT   E++ +      +
Sbjct: 490 KLLEVIGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSGDINLE 541

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D IL
Sbjct: 542 DLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTIL 601

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    L   S    G  I  ++ L+ N+ I        Y+    +++ ++
Sbjct: 602 CFSSRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYEEDKFVVMATA 661

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G    +  +E       G   L +  E+++  V    G + + +     +++ FS   +
Sbjct: 662 GGIVKKISLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESAV 721

Query: 679 PEMSRGK-GVRLQSYK--------------------------DGGISDVICFKICEGL-T 710
             M R   GVR                               D  +  V+   I +    
Sbjct: 722 RAMGRAATGVRGIKLALTNDLSDDESAVEIEDISDDNSDDILDLNVDKVVSLVIPKNQGA 781

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +    +      R   G +  K   R+GK +++
Sbjct: 782 ILTATQNGYGKRTELVEYPTKSRNTKGVISIKVSERNGKVVAA 824



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 84/233 (36%), Gaps = 38/233 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A L     E++   V+ +  G ++ +      +  S  + AL+ ++ D L   
Sbjct: 636 DENERITAILPVTAYEEDKFVVMATAGGIVKKISLTEFSRPRSSGIIALNLRDEDELIGV 695

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS-GRG----HGEAIQLLIDLNHNQ--------- 600
                ++ I+L S  G+        + + GR      G  + L  DL+ ++         
Sbjct: 696 DITDGSNEIMLFSAQGRVVRFSESAVRAMGRAATGVRGIKLALTNDLSDDESAVEIEDIS 755

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  +  +   +L  +  G     E  E    +R  K  + +   
Sbjct: 756 DDNSDDILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKVS 815

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           E+   VV  T     D + ++ +   L+   +++I  + R  +GVRL    + 
Sbjct: 816 ERNGKVVAATQVEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTED 868


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF   Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLREILGSYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN     + +  ++S+F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T DR+L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T             L   +  G       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVAQDRSEDAYLFFTTRSGLVKRTSVAEFANIRQNGLKALNLKDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+   ++G      + F    +  M R   GVR  + + G    V    I +    +
Sbjct: 652 LTDGNTDVIIGTKFGYSVRFKESVVRNMGRSATGVRGVNLRPGD-QVVGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTRADEYPTKGRGGKGIKTANVADKNGPLAG 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             +               ++      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDDGESIQTIINVAQDRSEDAYLFFTTRSGLVKRTSVAEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 649 NVFLTDGNTDVIIGTKFGYSVRFKESVVRNMGRSATGVRG-VNLRPGDQVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG        E     R GK     +  +K   +  ++ V GD  + ++    
Sbjct: 708 EVLIITEKGYGKRTRADEYPTKGRGGKGIKTANVADKNGPLAGLMTVKGDEDLMIITNTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  S+  I +  R   GV++        + ++ F   +
Sbjct: 768 VMIRTSVANISQTGRSTMGVKVMRL--DQDAQIVTFTTVQ 805


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/825 (32%), Positives = 401/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTSLSEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY----------------------KDGGISDVI---------CFKICEG--- 708
              GVR                          +   + DV+           ++ +    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGADEEIEADDVDDVVETTDGAETAVIEVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 75/265 (28%), Gaps = 47/265 (17%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTSLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 IGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGADEEIEADDVDDVVETTDGAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVICFKICEGLTWIDSAG 716
              G     +           D AG
Sbjct: 861 LSKGEKLQAVERLDASLDEVEDVAG 885


>gi|332702341|ref|ZP_08422429.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
 gi|332552490|gb|EGJ49534.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay]
          Length = 827

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/762 (34%), Positives = 416/762 (54%), Gaps = 37/762 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS++  +E+ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  A+KKSAR+V
Sbjct: 7   VSIKSEIEKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNSYNRAYKKSARVV 66

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 67  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDLVVDGQGNFGSIDGDAAAAMRYTEVRMSRL 126

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ VDFR  Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E+
Sbjct: 127 ASEFLADIEKETVDFRPNYDNSLQEPAVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGEL 186

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A L L+DNPE +   L  ++ GPDFPT       R  ++++Y  GRG  ++R    VE
Sbjct: 187 MDATLHLLDNPECTPRDLTAFVKGPDFPTAASCYGGR-GLMDAYETGRGSIKIRGTVAVE 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E   G   IV++EIP+ + KS L+EKIA LI  KRI  + D+RDES      ++    + 
Sbjct: 246 EKKGGRESIVISEIPFALNKSSLVEKIAALINDKRIDGVSDLRDESDRKGIRIVLDLKKG 305

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  ++  + +E+ F +NM    +G  P ++ L  IL  +L HRREV+ RR+ F 
Sbjct: 306 AIPDIIINMLYKFTPLESSFGINMMA-VVGSRPMLLNLKSILDYFLQHRREVILRRTRFD 364

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
           +   ++R  IL+GLLIA  NIDE++ IIR+     + K  ++ RF L++ Q  AIL++RL
Sbjct: 365 LDKAEKRAHILEGLLIALDNIDEVVRIIRSSATALEAKSRLMERFGLSDVQSQAILDMRL 424

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE+ +++ E   LL + E + S+L + +     I  E+ EV+ IF+       R+
Sbjct: 425 QRLVNLEQEKLREEFAELLKKIEYLKSILTNEEVLKGVIREELSEVRRIFATP-----RK 479

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEG 548
           T   E      +   + +I  E + + +S RG+I+          K     +S +   + 
Sbjct: 480 TVILEQDL--DSIDIEDLIADEEVVLTLSRRGYIKRTTLDSYQQQKRGGKGISGVLTGDD 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D +           +LL +  G+ + L    +  G     G  I  L+ L+ ++ + TA 
Sbjct: 538 DFVHTFCSTSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTTAL 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
               +      + V+ +G       S        G   + +  ++++ +V ++ G D + 
Sbjct: 598 TVREFAEHNYFMFVTKRGMIKKTSASLYANVRSSGVRAVNLRDDDELIMVREINGRDELI 657

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGL--------TW 711
           +V      + F+  +I  + RG  GV+  + +  D  ++ V+     E +          
Sbjct: 658 LVTAEGTSIRFTSAEIRPIGRGATGVKGIALRGSDEVVAGVVVRPDEEAVDASGEDRRLV 717

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  + + Y +           RGG G +  K  P++G+ + +
Sbjct: 718 LTISEKGYGKRTPVNQYRGQSRGGKGIINMKVTPKTGRVVGA 759



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 80/233 (34%), Gaps = 24/233 (10%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +        L      +    + ++ RG I+           S  + A++ ++ D L + 
Sbjct: 588 DKDEHVTTALTVREFAEHNYFMFVTKRGMIKKTSASLYANVRSSGVRAVNLRDDDELIMV 647

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------- 607
              +  D ++L++ +G +    +  +         ++ +     ++ +    V       
Sbjct: 648 REINGRDELILVTAEGTSIRFTSAEIRPIGRGATGVKGIALRGSDEVVAGVVVRPDEEAV 707

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGD 659
               +    +L +S KG       ++    +R GK  + +    K   VV       + +
Sbjct: 708 DASGEDRRLVLTISEKGYGKRTPVNQYRGQSRGGKGIINMKVTPKTGRVVGAVVTYESKE 767

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            V ++    K++  S + I  + R   GVRL   ++     V  F + +    
Sbjct: 768 EVILLTSGNKVIRLSSEDISVIGRATQGVRLVRMEEE--DRVAAFDLIKDSLI 818


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332200667|gb|EGJ14739.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41317]
          Length = 822

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/778 (30%), Positives = 402/778 (51%), Gaps = 39/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  + N    + V  + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDNNGSDNLF--DRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSA+ V + +G  HPHGD ++YD+LVRLAQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RMT +A  +++ + E+ V+F+  Y+ + +EP V PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ EA   L+DNP+       E  +E + GPDFPT G+IV  +
Sbjct: 179 GGIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDK 238

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG  R+R    +EE G     I++TE+PYQV    L+  IAE I   +I 
Sbjct: 239 -GIQDTYRTGRGSIRMRGVTSIEEEGN-RQVIIITELPYQVNPDNLVASIAEQIRDGKIA 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +  G VP+ +
Sbjct: 297 GISKIDDESSDRVGMRIVITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDG-VPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L+ ++ H+ +V+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     D+
Sbjct: 356 RLDQMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 415

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q D IL ++LR L  +E  +I  EL  L      + ++L S ++Q 
Sbjct: 416 ARTGLIDLLDVDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAILESPQRQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
           + +  E+ E+ + +        RRT     S       ++ +I +E + V I++ G+   
Sbjct: 476 DIVRTELAEIVDKYGDE-----RRTQIIAASG---DVSEEDLIARENVVVTITSTGYAKR 527

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                 RS +     +     K+ D ++      T D IL  +  G+ Y L A  L    
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAT 587

Query: 584 -RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ ++ G       ++       G 
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATAHGRVKKSRLTDYDTARSGGL 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +++      T  D + +V E  + + F+ D   +  M R   GV+   +++ 
Sbjct: 648 IAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDETLRPMGRATAGVKGMRFREE 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +   ++ ++G    R+  +     G RGG+G +  K   + GK + +
Sbjct: 708 DQLLALTVVAEDSSLFVATSGGYGKRTPMEEYPTKG-RGGLGVVAFKYDKKRGKLIGA 764



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKA--TLQQAMIEKEPITVVISNRGWIRSLKSH 536
           +R  +   +  T  G+      E    ++    +Q    E  P  V+ +  G ++  +  
Sbjct: 578 LRAFELPEATRTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATAHGRVKKSRLT 637

Query: 537 SVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
             D +      A++  EGD L  A      D +LL+S +G+A    A +  + R  G A 
Sbjct: 638 DYDTARSGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADD-ETLRPMGRAT 696

Query: 591 QLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE- 647
             +  +       ++   V      L V +S G        E     R G   +    + 
Sbjct: 697 AGVKGMRFREEDQLLALTVVAEDSSLFVATSGGYGKRTPMEEYPTKGRGGLGVVAFKYDK 756

Query: 648 --EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
              K+   + V  D  +  +  N  ++   + QI    R   GVRL     G     +
Sbjct: 757 KRGKLIGALTVNDDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAV 814


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 411/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   DKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMQKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +  I+N +I+IE+L++ I  PDFPTGG  +   + + E++  GRG   +RA
Sbjct: 185 NLTEVVDGTIQYIENNDITIEELIKTIKAPDFPTGG-TIYGYDGVREAFLTGRGRIVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I K AE++  K++  +  IRDES  +   +++
Sbjct: 244 KANIEEV-NGRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G  PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDAVPNIVLNKLYKYTALQSSFSVNNIALVKG-RPQMLNLKEMIHHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I IIR     D  +  ++ +F L+E Q  AI
Sbjct: 362 RTQFELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++LL     +  +L+  +++   I  E+ E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDILDKKERRMEIIKLELVEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSNIEYAGGDFSM--EDMIPDEQVVITISHAGYIKRTPLIEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + V  ++++   
Sbjct: 594 VQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGINAINVREDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLT 710
               G+ HV +  ++ K + F   +   M RG  GVR  +  D     V    + +    
Sbjct: 654 KLTNGNSHVMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDAN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++GK ++
Sbjct: 714 ILVVSENGYGKRSSLDDYRITNRGGKGVKTISITDKTGKLVT 755



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/458 (15%), Positives = 152/458 (33%), Gaps = 35/458 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           EL  A+    + +    +++++  V+     S   D   E++     +     +    + 
Sbjct: 366 ELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQFKLSE---IQAKAIV 422

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DEIIA 405
             R+ Q+  L+        +   V        +   +RR+EI+K  L+   +   DE  +
Sbjct: 423 EMRLRQLTGLEQDKLRTEYNDLLVTIADLKDILDKKERRMEIIKLELVEIKDKYGDERRS 482

Query: 406 IIRNE----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            I            +   +  +T +    I    L   +      +  +      E + +
Sbjct: 483 NIEYAGGDFSMEDMIPDEQVVITISHAGYIKRTPLIEYKTQNRGGVGQKASTTRDE-DFL 541

Query: 462 DSLLNSGKQQWNQIACE------IREVKEIFSKSTDLGRRRTTFCEVSRADKA---TLQQ 512
             L      Q+     +      +R  +      T  GR       + + DK       Q
Sbjct: 542 QDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIEQDDKVQAFICTQ 601

Query: 513 AMIEKEPI----TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            + ++E I     ++ + +G ++              ++A++ +E D L  A   +    
Sbjct: 602 DLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGINAINVREDDELLEAKLTNGNSH 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L    GKA           GRG      + +  + ++ +    V D    +LVVS  G
Sbjct: 662 VMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDANILVVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  +K   +  +  VT  D + ++ ++   +   +  
Sbjct: 722 YGKRSSLDDYRITNRGGKGVKTISITDKTGKLVTIKTVTDTDDLMIINKSGIAIRMEVAA 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  M R   GVRL + K       +   + +     D 
Sbjct: 782 LRVMGRATQGVRLINLKGDDTIAAVAKVMNDDTPIEDV 819


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/751 (35%), Positives = 402/751 (53%), Gaps = 31/751 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V++  L   ++  +L YA+S I  RA+PD+RDG KPVHRRI++AM+E G        KSA
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGD +VYD++VRLAQPF  R PL+ G GNFG+IDGD AAA RYTE+R+
Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L+ +D++ VDF+  Y+E   EP V P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A   ++DNP+++ E+L++ + GPDFPTGGII+  ++ I ++Y  GRG   VRA+ 
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE   G   IVVTEIPYQV + RL+EK+ EL+  K++P + +I D +      ++   
Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P +++  ++  + ++  F + M  L  G  P+V+ L  +L  ++AH+ EV+ RR+
Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGA-PRVLSLKEMLHYYIAHQEEVIVRRT 443

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433
            + +   + R  IL+GL+IA  NIDEII IIR+    K     M  RF+LT+ Q  AIL 
Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR L  LE  +I+ EL  LL        +L+  +     I  E+ EVK+ F       
Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
            RRT   E ++       + +I +E + V ++  G+++          K     +S ++ 
Sbjct: 560 -RRTLLSEAAK---DLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D ++    A T   +L  ST GK Y L    L   S    G AI  L+ L   + I 
Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETIS 675

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                  + S   L+  +  G              R G   + +   +++  V +V  G+
Sbjct: 676 AVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGE 735

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
            V +V    K +++   ++  M R   GVR  +     I+ V+  +I +  T       +
Sbjct: 736 KVLMVSSAGKAIMWDEGEVRAMGRDTMGVRGMNVP--PIAKVLGMEIAQPDTDLFVITEK 793

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            Y +           RGG G        + G
Sbjct: 794 GYGKRTPIAEYPEHHRGGQGVFTITMTEKKG 824



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 22/240 (9%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++         R T        E      A +       +   +  +  G ++      
Sbjct: 646 KVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDL 705

Query: 538 VDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            D +      A+  K+ D L         +++L++S+ GKA     G +   R  G    
Sbjct: 706 YDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEV---RAMGRDTM 762

Query: 592 LL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE 647
            +  +++     ++   +      L V++ KG       +E   + R G+    + ++ +
Sbjct: 763 GVRGMNVPPIAKVLGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEK 822

Query: 648 EKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + +  V+K+    D + ++ E    +   +  I E+ R  +GV +    D      +   
Sbjct: 823 KGLLAVMKIVAEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVAIS 882


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/754 (31%), Positives = 399/754 (52%), Gaps = 29/754 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   +   Y+ YA+S I  RA+PD+RDG KPVHRR+++AM E+GL  G ++KK+A
Sbjct: 16  VRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKAA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VYD++VRL Q F  RYPLI GQGNFG++DGD+ AA RYTE R+
Sbjct: 76  RIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A+ +L+ +D++ VD    ++E   EP + P+  PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 136 AKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A L L+++P+ + ++L+  + GPDFPTG   +  R  I ++Y  GRG  R+RA+ 
Sbjct: 196 SETVDALLILLEDPDATPDRLMAVLPGPDFPTGA-YIYGRTGIRDAYLTGRGLIRMRAKA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE+       I+V+E+PYQV K++LIE+IAEL+  ++I  + D+RDES  +   ++   
Sbjct: 255 FVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +      ++  +F  + M++ F   M  L     P+V+ L   L  ++ HR+ ++ RR+
Sbjct: 315 KKEQPAPPILNQLFKHTAMQSTFGAIMLALV-EGQPKVLALKEALSHFIEHRKTIVIRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+G  IA  ++D +IA+IR     D  +  ++ +F +++ Q  AIL 
Sbjct: 374 RFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQFGMSQIQAQAILE 433

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           LRL+ L +LE  +I+ E    +A  E+  ++L S       I  E+  +KE +       
Sbjct: 434 LRLQRLTQLERQKIQDEYSETIAAIERYRAILASEALVCQIIKEELLAIKETYGD----- 488

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT    +         + M+  E + + I++ G+I+          +     ++ +  
Sbjct: 489 LRRTE---ILEETTEIELEDMLADEEMVIPITHGGYIKRSNLNAYRSQRRGGKGMTGMAT 545

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D ++    A T   +LL +  GK + L    L        G+A+   + L   + I 
Sbjct: 546 KEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKGKALANFLQLGVGEQIT 605

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           T      ++    LL+ + +G     E +        G   + +   +++  V    GD 
Sbjct: 606 TVIPIRQFEVDRYLLMATRRGIVKKTELNAYGNPRAGGIIAITLDGGDELIAVRLTKGDD 665

Query: 661 VAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++       + F  D++    R  +GV+  S  +GG   V    + +G   +    R 
Sbjct: 666 EILLGTRQGMAIRFKEDEVRSAGRAARGVKGISL-EGGDEVVGAEVVAQGAAVLTVTERG 724

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     L  RGG G +  +   R+G  + 
Sbjct: 725 YGKRTDPEEYRLQSRGGKGIINIRATDRNGPAVG 758



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIAL 555
           V       +     E +   ++ + RG ++  + ++        + A+    GD L    
Sbjct: 600 VGEQITTVIPIRQFEVDRYLLMATRRGIVKKTELNAYGNPRAGGIIAITLDGGDELIAVR 659

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                D ILL +  G A       + S       ++  I L    ++V A V      +L
Sbjct: 660 LTKGDDEILLGTRQGMAIRFKEDEVRSAGRAARGVKG-ISLEGGDEVVGAEVVAQGAAVL 718

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLL 671
            V+ +G     +  E    +R GK  + + + ++      V+ V +GD + ++ +  ++ 
Sbjct: 719 TVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRNGPAVGVMLVQSGDQIMMISQEGRIT 778

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +D+I  + R   GVRLQ  +       +   + +     ++ G
Sbjct: 779 RMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSDDEGVEEADG 824


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/769 (31%), Positives = 399/769 (51%), Gaps = 37/769 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + NT+ ++ V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+   
Sbjct: 2   DENTIFDK-VHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNG 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                +K ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AA
Sbjct: 61  PDKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+++++  +L  + +D V+F   ++E + EP V PS+FPNLL NGT GIAVGM
Sbjct: 121 AMRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGM 180

Query: 188 ATSIPSHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           AT+IP HN+ E+  A + +ID     N    IE+LL+ + GPDFPTG  I+  +  I ++
Sbjct: 181 ATNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATIL-GKAGISQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +VRA   +E +  G   IVVTE+PY V K+RLI+KIAEL+  K++  + +IR
Sbjct: 240 YRTGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      +     R  + ++++  +F  + M+  F + M  L     P+++ L  +L 
Sbjct: 300 DESDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNE-PKILNLFDMLN 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR   N  + K  ++ 
Sbjct: 359 YYLEHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLME 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LT+ Q  AI+++RLR+L  LE  +++ E + L+A+  ++ ++L   K     I  E+
Sbjct: 419 RFALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAILADEKLLLGVIKDEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             +++ +      G  R T       D     + +I +E   + ++  G+I+        
Sbjct: 479 VLIRDKY------GDERRTSIGFDVDD--ISMEDLIPRENTIITMTKLGYIKRMTVDTFK 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  +   + D ++      +   I+  +  G+ Y + A  +   S    G A
Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESSRTARGTA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  LI L   + I        Y     L + +  G        E     + G   + +  
Sbjct: 591 IVNLIQLQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPIMEYANIRKTGLLAITLKE 650

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            +++  V     D  V +V +N + + F    +  + R   GVR  +    G  +VI  +
Sbjct: 651 NDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGVRGINL--DGDDEVIGMQ 708

Query: 705 I-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +G   +  +     +           RGG G    K   ++G  + 
Sbjct: 709 LNSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEKTGDVVG 757



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 18/237 (7%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR----- 531
            + +         R T        +      A +     +++    + +  G ++     
Sbjct: 574 MKAYEIPESSRTARGTAIVNLIQLQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPIM 633

Query: 532 -SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L A+  KE D L           + L++ +G+       ++ S       +
Sbjct: 634 EYANIRKTGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGV 693

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSS 646
           +  I+L+ + +++   +      LL VS  G       +E     R GK      +   +
Sbjct: 694 RG-INLDGDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEKT 752

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            + + +      + V ++     ++   +D I  + R   GV+L +  D  I   + 
Sbjct: 753 GDVVGVKAVDEENEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDDNVIVASLA 809



 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 66/206 (32%), Gaps = 23/206 (11%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRA------------DKATLQ 511
           L   ++    I   E +E   +F  +     +++   E +              +   ++
Sbjct: 597 LQPEEKITAVIPINEYKEDHYLFMATKSGVVKKSPIMEYANIRKTGLLAITLKENDELIE 656

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
               + +    +++  G         +RS+   ++ +  ++    D +         + +
Sbjct: 657 VKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGVRGINLDGDDEVIGMQLNSQGEAL 716

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L +S +G                G+ I+         D+V     D   ++++++++G  
Sbjct: 717 LFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITEKTGDVVGVKAVDEENEVMMITTEGVV 776

Query: 624 FI--VEESEIIANTRKGKTFLKVSSE 647
               V+   ++     G   + +   
Sbjct: 777 IRMGVDGISMLGRNTSGVKLMNLDDN 802


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 12/200 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GV 687
            ++  ++  I +  R   GV
Sbjct: 768 VMIRTNLANISQTGRATMGV 787



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 72/225 (32%), Gaps = 25/225 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                 N  +           L++++  G       + I    R 
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRA 783


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/745 (34%), Positives = 404/745 (54%), Gaps = 29/745 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+ V++   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG      +KKSA
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK+HPHGD +VYD+L R+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +++D VDFRD ++    EPVV P+  PNLL NG SGIAVGMAT+IP HN+
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LI++PE ++E+L++ I GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLIL-GTEGILAAYSTGRGQITLRAKT 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE GRG++ IVVTE+PYQV K+RL E+IAEL+  ++I  + D+RDES      ++   
Sbjct: 245 HIEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L    R P+V+ L  +L+E++ HR+EV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +I  IR+    +  +  ++S FSLTE Q  AIL
Sbjct: 365 TEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+LR L  LE  +I+ E   ++    +++ +L + ++  + I  ++  +KE +      
Sbjct: 425 DLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              + +I    + + +++RG+I+          +     +  + 
Sbjct: 482 --RRTRII--PDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGML 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++  L  ++ D +L  +  GK Y L A  +   S    G  +  LI L   + +
Sbjct: 538 TREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQV 597

Query: 603 VTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            +           L++ + +G     +  E       G   + +   + +  V    G +
Sbjct: 598 TSMLAVREFDAEYLVMATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHE 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGR 717
            + +     + L F   ++  M R   GV   +  DG    V+   +  EG   +    R
Sbjct: 658 DILLTTARGQTLRFEQSEVRPMGRPATGVIGINLADG--DRVVSMDLAEEGADLLVVTAR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
              +        +  R   G +  K
Sbjct: 716 GIGKRTALSEYPVKGRATGGVITIK 740



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 17/244 (6%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSH 536
           +++  +   S  T  G        +   ++ T   A+ E      V+ + RG I+  +  
Sbjct: 567 QLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAVREFDAEYLVMATVRGKIKRTQLR 626

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L A+  +EGD L     +H  + ILL +  G+        +   R  G   
Sbjct: 627 EYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEV---RPMGRPA 683

Query: 591 QLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
             +I  +L     +V+  + +    LLVV+++G       SE     R   G   +K+ +
Sbjct: 684 TGVIGINLADGDRVVSMDLAEEGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKLRN 743

Query: 647 EEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           +        V  +H  +  +     +L  S  +I  + R   GV + +   G     +  
Sbjct: 744 DLDEVAAAAVVREHSLLTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAALSV 803

Query: 704 KICE 707
           +  E
Sbjct: 804 EDPE 807


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT              + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 K-----RRTELMVGEV--LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    D        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVDSESSDDAYLFFTTRHGVVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E           +    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVDSESSDDAYLFFTTRHGVVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASEKEEV 812



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 84/255 (32%), Gaps = 37/255 (14%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VDSESSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGVVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMKLVVKVTGDH 660
            + K+     V    
Sbjct: 794 QDAKIVTFTTVAASE 808


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/798 (31%), Positives = 418/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+   +    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDINELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V    V
Sbjct: 832 NEKLISLKVVKQGDV 846


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/758 (34%), Positives = 419/758 (55%), Gaps = 30/758 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     FKK
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTEA
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +++D VDF+  ++    EP V P+KFPNLL NG SGIAVGMAT+IP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A   L+D+PE + E+L+++I GPDFPTG  ++   E + + Y+ GRG   +RA
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINP-EELPKIYKKGRGSVTIRA 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV R    IV+TE+PYQV K+ LI+KIAEL+  K+I  + DIRDES  +   V+ 
Sbjct: 241 KHTIEEV-RKRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++ L+ ++T F  NM  L  G  P+++ L   L+E++  RREV+ R
Sbjct: 300 ELKRDATPQVVLNRLYKLTPLQTNFNFNMIALVNGE-PKLLNLKRYLEEFIGFRREVILR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431
           R+++ ++  + R+ IL+GL  A  NID ++ +++    P+     +  +F L+E Q  AI
Sbjct: 359 RTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  +I  E   L  E      ++ S ++Q   I  E+ ++ E F     
Sbjct: 419 LDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGD--- 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
             +RRT        +     ++MIE E + + ++++G++        R+       +  +
Sbjct: 476 --QRRTKIV---SKESEIDIESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRGI 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +EGD +K  + A + D +L+ +  GK Y L A  +        G +I+  +      +
Sbjct: 531 KTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGNE 590

Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           IV+  +    +     +  V+ +G        E       G   + +   +++  V  V+
Sbjct: 591 IVSRIIPVKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVS 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D++ ++ +N + + F +  + +M R  +GVR                  E    +   
Sbjct: 651 DKDNIILISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIVT 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + Y +        L +RGG G +  K   ++GK   +
Sbjct: 711 EKGYGKRVEIEEFHLQRRGGKGLIAAKLSEKTGKVADA 748



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 12/199 (6%)

Query: 521 TVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
              ++ RG+++           S  ++A++ + GD L         D I+L+S +G+A  
Sbjct: 607 VFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVSDKDNIILISKNGRAIK 666

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            P  ++     +   ++ ++    +  +  A V      LL+V+ KG    VE  E    
Sbjct: 667 FPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIVTEKGYGKRVEIEEFHLQ 726

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT---GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  +     EK   V   T    D  + +V +  K++      IP   R  +GVR+
Sbjct: 727 RRGGKGLIAAKLSEKTGKVADATTLKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRI 786

Query: 690 QSY-KDGGISDVICFKICE 707
           Q   +D  +  V      E
Sbjct: 787 QKLAEDDAVVSVSKVTEAE 805


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/782 (33%), Positives = 405/782 (51%), Gaps = 43/782 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  +   T+    V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   DDQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G+    A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG+ID
Sbjct: 62  EAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSID 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE RM ++A  +L+ +++D VDF   Y+E   EP V PSK P LL NG++G
Sbjct: 122 GDPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A + LID+P+ +IE L+  I GPDFPTG  I+     I ++
Sbjct: 182 IAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQIL-GVSGIRQA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  +VRA+  VE + +    IVVTEIPYQV K+RLIE IA L+  K +  + D+R
Sbjct: 241 YTTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++      + P++++  ++  + M+  F +    L  G  P+++ L  IL 
Sbjct: 301 DESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGH-PRILNLKEILV 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H++EV+ R++ + +     R  IL GL IA  ++DE+IA IR+       +  ++S
Sbjct: 360 YYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLIS 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q  AIL++RL+ L  LE  +I+ E   ++A    ++S+L    +       + 
Sbjct: 420 KFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIMGIAKDDF 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
            +VK+ F        RRT+             + +I +E I + IS++ +I+        
Sbjct: 480 LDVKKRFGDP-----RRTSIV---PDAGEIDAEDLIAEEDIVITISHQSYIKRQALTNFR 531

Query: 532 SLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +       + A   K         GD  +  L A T D IL  +  G+ Y      +   
Sbjct: 532 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPEA 591

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANT 635
             +  G  I+ L+ L  N+ I            D    L + ++KG       SE     
Sbjct: 592 GRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKTAR 651

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           R G   + +  +E +  V   +G H + +   +   + F+   +  M R   GVR  + +
Sbjct: 652 RAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVRGITLR 711

Query: 694 DGGISDVICFKICEGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 ++    CEG +   +        +  +     L  RGG G +  K   ++G  +
Sbjct: 712 --HHDVLVSMDSCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGIINLKVTNKTGDIV 769

Query: 752 SS 753
            S
Sbjct: 770 GS 771



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 74/204 (36%), Gaps = 13/204 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLST 568
            ++     + +N+G I+         +      A++  + + L           ILL + 
Sbjct: 624 EDENKFLFMATNKGVIKKTSVSEFKTARRAGLIAINLDDDEDLIDVKLTSGHHDILLATR 683

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVE 627
           DG A      ++         ++  I L H+  +V+    +  + ++L V+  G     +
Sbjct: 684 DGYAIRFNESDVRPMGRTAHGVRG-ITLRHHDVLVSMDSCEGDSGEVLTVTEGGLGKRTD 742

Query: 628 ESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSR 683
            SE    TR GK  + +   ++    +  K+  DH  + ++     ++      I   SR
Sbjct: 743 ISEYRLQTRGGKGIINLKVTNKTGDIVGSKLVNDHHDILLISAAGIIIRMKASDISSYSR 802

Query: 684 -GKGVRLQSYKDGGISDVICFKIC 706
             +GV++   + G     +     
Sbjct: 803 NAQGVKMMDLEKGDKVAALAIVDT 826


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/825 (32%), Positives = 403/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  ++++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ IE L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME+ F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EIKRGESAEVVLNNLYQQTQMESVFGINMVALVDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            + +  +L +       I  E+  ++E +  +      R T    S  D   L   +I  
Sbjct: 484 IQGLIRILENPDVLLQVIRDELINIREEYGDA------RRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY-------------KDGGISDVI-------CFKICEGLT------------ 710
              GVR                 + GG+ D +         +  +G              
Sbjct: 716 TATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDV 775

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 77/267 (28%), Gaps = 50/267 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLAKGEEVVSLIVSERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                                +L  +  G       +E     R
Sbjct: 741 GGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+  + D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVIC---FKICEGLTWIDSA 715
              G     +      + E    +D A
Sbjct: 861 LSKGEKLQAVERLDASLEEPEDVVDEA 887


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 411/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E I + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+   ++G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                    V ++ +G ++  K           L AL  +EGD L      +  + I++ 
Sbjct: 604 DEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+++ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIITEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE 707
           R  +GV++    D   + ++ F + E
Sbjct: 783 RVTQGVKVMRLDD--TARIVTFALVE 806



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 78/253 (30%), Gaps = 30/253 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  +   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASDNNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG-TKFGYSVRFKEDTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L+++  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIITEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +     + N ++           ++V++  G       + I    R  +G   +++    
Sbjct: 738 KTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTA 797

Query: 649 KMKLVVKVTGDHV 661
           ++     V  + +
Sbjct: 798 RIVTFALVEPEEI 810


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/825 (32%), Positives = 400/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME  F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       +  E+  ++E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVVRDELINIREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSY---------------------------------KDGGISDVICFKICEGL 709
              GVR                                      DGG S VI       +
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNV 775

Query: 710 T-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 50/268 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVIC---FKICEGLTWIDSAG 716
              G     +      + E    +D AG
Sbjct: 861 LSKGEKLQAVERLDASLDEVDEVVDEAG 888


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 415/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDES 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 20  MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 79

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 80  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 140 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 200 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 259 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 318

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 319 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 377

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 378 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 437

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 438 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 497

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 498 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 670

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 671 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 729

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 730 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 765



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 608 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 667

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 668 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 726

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 727 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 786

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 787 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 581 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 637

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 638 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 697

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 698 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 757

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 758 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 817

Query: 651 K 651
            
Sbjct: 818 V 818


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/825 (32%), Positives = 401/825 (48%), Gaps = 96/825 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR+++AM E+G     A+ K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY ++ GQGNFG++DGDSAAA RYTE+
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  ++  +D++ VDF+  Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALID PE+ +E L+EYI GPDFPT GI +     I   YR GRG  R+RA
Sbjct: 186 NLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGI-INGTAGIAAGYRTGRGRVRIRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 KADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ME  F +NM  L  G  PQ+M L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDG-RPQLMNLKQMLEAFIRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  +L+GL +A  NIDE+I +I+    P+                    
Sbjct: 364 RTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 GAAGAEASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLGV 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            E +  +L +       I  E+  V+E +      G  R T    S  D   L   +I  
Sbjct: 484 IEGLIRILENPDVLLQVIRDELINVREEY------GDERRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  I   I L   + +        Y     +   +  G   
Sbjct: 596 GKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
               SE      +GK  + +   + +  V    GD  V +   N K + F    +  M R
Sbjct: 656 KTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 715

Query: 684 -GKGVRLQSYKDG----------------------GISDVI---------CFKICEG--- 708
              GVR      G                       + DV+           ++ +    
Sbjct: 716 TATGVRGIRLTKGEEVVSLIVAERAGGVEEEIEGDEVDDVVEATDGGESAVIEVADDGNV 775

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +           RG  G +  +   R+GK + +
Sbjct: 776 AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRA 820



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 72/250 (28%), Gaps = 47/250 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L              +  G ++                A++  EGD+L
Sbjct: 622 IPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 681

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 682 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLTKGEEVVSLIVAERA 740

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                            +   +L  +  G       +E     R
Sbjct: 741 GGVEEEIEGDEVDDVVEATDGGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGR 800

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+    D V ++ +   L+     +I  + R  +GV L  
Sbjct: 801 GTQGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIR 860

Query: 692 YKDGGISDVI 701
              G     +
Sbjct: 861 LSKGEKLQAV 870


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/779 (30%), Positives = 397/779 (50%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSAGDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/815 (32%), Positives = 406/815 (49%), Gaps = 83/815 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGD+AAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ P LL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI+ P +SIE+L+EYI GPDFPT  I +  R+ I+E+Y+ GRG  
Sbjct: 182 IPPHNITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAI-INGRKGIIEAYKTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  V+    G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D  
Sbjct: 241 IMRSKADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  IL+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     R+ LTE Q  AIL+LRL  L  LE  +I +E + 
Sbjct: 420 KAMLEKAGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L+     +  +L+S ++    I  E+ E+ E F        RRT     +  +     + 
Sbjct: 480 LIEIIAALLYILHSPERLLEVIKEELNEILENFGDE-----RRTVI---NANEVDMSLED 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +                  A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S +  G  I  L+ L+  + I        Y     +++ +S 
Sbjct: 592 FSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVRDYADDKYVIMATSH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI---- 675
           G                G   + +   +++  V    G   + +  +  K++ F+     
Sbjct: 652 GTVKKTALKAYSNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRD 711

Query: 676 DQ----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +                +  M R   GVR    +DG     +     +G   +      
Sbjct: 712 SETGLVKLDAETNEELVALRPMGRTATGVRGIRLEDGQKVVSLIVPKADGA-ILTITENG 770

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +           R   G +  K   R+G  + +
Sbjct: 771 YGKRTALDEYPAKSRATKGVVSIKVSERNGAVVGA 805



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 30/222 (13%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ ++ G ++     +        + A++ K+GD L      
Sbjct: 628 EHITAILPVRDYADDKYVIMATSHGTVKKTALKAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAG-----------------NLLSGRGHGEAIQLL--IDLNH 598
                I+L S  GK                         L++ R  G     +  I L  
Sbjct: 688 DGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAETNEELVALRPMGRTATGVRGIRLED 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVV 654
            Q +V+  V  +   +L ++  G        E  A +R  K  + +     +   +  V 
Sbjct: 748 GQKVVSLIVPKADGAILTITENGYGKRTALDEYPAKSRATKGVVSIKVSERNGAVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
               D + ++ +   L+      +  + R  +GV +    +G
Sbjct: 808 VGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRTAEG 849


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 454/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L + +L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHSLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGSSITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 411/761 (54%), Gaps = 30/761 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     
Sbjct: 1   MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   
Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q 
Sbjct: 359 VVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E I + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--VSLEDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            + I T              L+ V+ +G     +E+E     + G   LK+   +++  V
Sbjct: 592 GETIQTVINAKSDEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINV 651

Query: 654 VKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+   ++G      + F  D I  MSR   GV+  + +DG    V    I E    
Sbjct: 652 FLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDGD-QVVGAAAITEDQEV 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +  +        RGG G        ++G    
Sbjct: 711 LIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKNGNLAG 751



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                    V ++ +G ++  K           L AL  +EGD L      +  + I++ 
Sbjct: 604 DEASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG 663

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G +       + S       ++  + L     +V A       ++L+++ KG     
Sbjct: 664 TKFGYSVRFKEDTIRSMSRMAAGVKG-VTLRDGDQVVGAAAITEDQEVLIITEKGYGKRT 722

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             +E     R GK     +  +K   +  +V V+GD  + V+ +   ++  ++  I +  
Sbjct: 723 SATEYPTKGRGGKGIKTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTG 782

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE 707
           R  +GV++    D   + ++ F + E
Sbjct: 783 RVTQGVKVMRLDD--TARIVTFALVE 806



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 81/259 (31%), Gaps = 30/259 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           R+  L+  E  +       L      +   L+ G+     I   + E  +   +   +  
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTVINAKSDEASDNNHLVFVTRQ 618

Query: 492 LGRRRTTFCEV-------------SRADKATLQQAMIEKEPITVVISNRGW--------I 530
              +RT   E                 D+          E I +  +  G+        I
Sbjct: 619 GLVKRTKEAEFKNIRQNGLIALKLREGDELINVFLTNGNEEIIIG-TKFGYSVRFKEDTI 677

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           RS+   +  +  +  ++GD +  A        +L+++  G      A    +    G+ I
Sbjct: 678 RSMSRMAAGVKGVTLRDGDQVVGAAAITEDQEVLIITEKGYGKRTSATEYPTKGRGGKGI 737

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +     + N ++           ++V++  G       + I    R  +G   +++    
Sbjct: 738 KTANITDKNGNLAGIVTVSGDEDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTA 797

Query: 649 KMKLVVKVTGDHVAVVGEN 667
           ++     V  + +  V E+
Sbjct: 798 RIVTFALVEPEEIDQVTED 816


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 396/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +        G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++ +G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G + T    ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG-IRLREHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           +S KG        E     R GK      +   +   +  V  V G + + V+ ++  ++
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP-LAGVTTVDGTEDILVMTDSGVMI 773

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            F+I  + +  R   GVRL    D      +     E     D + 
Sbjct: 774 RFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSK 819


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++PE +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  ++DE+IAIIRN       +  ++SRF L+E Q 
Sbjct: 359 ITRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSRFQLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L    +    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPDRISAIIIQEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEVEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D +K  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G       SE     + G   L +   +++  V+
Sbjct: 592 EETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELINVL 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++  ++   + F    I  M R   GVR    +DG +  +   +I +    +
Sbjct: 652 LTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRGVKLRDGDLV-IGASRISDSQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 VITEKGYGKRTRATEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 83/244 (34%), Gaps = 18/244 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLK 552
             E          +            + +G ++   +          L AL+ K+GD L 
Sbjct: 589 LDEEETIQTIINARKEDIDNKFFFFTTRQGLVKRTNASEFGNIRQNGLRALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L    ++ I++ +  G +      ++ +       ++  + L     ++ A     + 
Sbjct: 649 NVLLTDGSEDIIIGTKSGYSVRFEEASIRNMGRSATGVRG-VKLRDGDLVIGASRISDSQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++ KG       +E     R GK      +   + +   LV     + + ++    
Sbjct: 708 EVLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKNGQLAGLVTVTGHEDIMIITNKG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            ++  SI  + +  R   GV++        S ++ F + +     D A      S +DL 
Sbjct: 768 VIIRTSIADVSQTGRSTMGVKVMRL--DQDSKIVTFALVDPEAEKDFAE----LSTSDLA 821

Query: 728 GWLG 731
              G
Sbjct: 822 SSRG 825


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H+ EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQTEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIRN     + +  ++++F L+E Q 
Sbjct: 359 VTRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L+  ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +      R T   +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 A------RRTELMIGEV-LSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + KG       +E     + G   L +  E+++  V 
Sbjct: 592 GESIQTIINVEQDRSDEAYLFFTTRKGLVKRTNVAEFSNIRQNGLKALNLRDEDELINVF 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+   ++G      + F+   +  M R   GVR  + ++G    V    + +    +
Sbjct: 652 LTDGNTDVIIGTKYGYSVRFNEAVVRNMGRSATGVRGVNLREGD-KVVGASVVTDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           R G G        ++G    
Sbjct: 711 IITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAG 750



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 18/222 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +     E      + +G ++              L AL+ ++ D L 
Sbjct: 589 LDEGESIQTIINVEQDRSDEAYLFFTTRKGLVKRTNVAEFSNIRQNGLKALNLRDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
                     +++ +  G  Y++        R  G +   +  ++L     +V A V   
Sbjct: 649 NVFLTDGNTDVIIGTKYG--YSVRFNE-AVVRNMGRSATGVRGVNLREGDKVVGASVVTD 705

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++L+++ KG        E     R GK     +  EK   +  ++ V GD  + ++ +
Sbjct: 706 QDEVLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAGLLTVKGDEDLMIITD 765

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              ++  S+  I +  R  +GV++        + ++ F   +
Sbjct: 766 TGVMIRTSVGNISQTGRSTQGVKVMRL--DQDAKIVTFTTVQ 805



 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 80/250 (32%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGESIQTIINVEQDRSDEAYLFFTTRKG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW--------IRS 532
             +RT   E S   +  L+   +  E               ++ +  G+        +R+
Sbjct: 619 LVKRTNVAEFSNIRQNGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A      D +L+++  G      AG   +    G+ I+ 
Sbjct: 679 MGRSATGVRGVNLREGDKVVGASVVTDQDEVLIITEKGYGKRTMAGEYPTKGRAGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G         I    R   G   +++  + K+
Sbjct: 739 ANITEKNGPLAGLLTVKGDEDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFTTVQPDD 808


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 402/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISI-----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+          E +L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+ D+S  + 
Sbjct: 246 IRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+VM +  +L+ +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILDMLRLYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR        K  +++RF LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIARFDLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++SE + L+ +  ++ ++L   K   + I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAILADRKLLLSVIREEILIINDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I +E + + ++  G+I+               
Sbjct: 485 GDE-----RRTSIG---FDEFDISMEDLIPRENVVITMTKLGYIKRMTVDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D +K      T   I+  +  G+ Y +    +   S    G AI  ++ L
Sbjct: 537 GIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEASRTARGTAIINILQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + + KG       ++     + G   + +  ++++  V
Sbjct: 597 MPDEKITAMIPIKEYEDGKFLFMATEKGLVKKTPITDYANVRKTGLAAITLREDDRLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                 + + +V +  + + FS   +    R   GVR  +  D    +VI  ++  +G  
Sbjct: 657 KITDNEEDIVLVTKYGQCIRFSEKDVRATGRTSMGVRGMNLSD--RDEVIAMQMSTQGSD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  N        RGG G    K   ++G  + 
Sbjct: 715 LLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGNVVG 756



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 12/212 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 A +     E      + + +G ++              L+A+  +E D L    
Sbjct: 598 PDEKITAMIPIKEYEDGKFLFMATEKGLVKKTPITDYANVRKTGLAAITLREDDRLIEVK 657

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                + I+L++  G+       ++ +       ++ + +L+   +++   +      LL
Sbjct: 658 ITDNEEDIVLVTKYGQCIRFSEKDVRATGRTSMGVRGM-NLSDRDEVIAMQMSTQGSDLL 716

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV---KVTGD-HVAVVGENRKLL 671
           +VS KG        E     R GK        EK   VV    V  D  + ++     ++
Sbjct: 717 IVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGNVVGMKAVNEDSEIMIINTEGIII 776

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                 I  + R   GV+L +  +G     + 
Sbjct: 777 RMQCSDISVLGRVTSGVKLINLAEGDTVASVA 808



 Score = 44.0 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 85/244 (34%), Gaps = 24/244 (9%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R+  ++  E    ++           I  L+   K        E  + K +F  +     
Sbjct: 569 RVYRIKGYEI--PEASRTARGTAIINILQLMPDEKITAMIPIKEYEDGKFLFMATEKGLV 626

Query: 495 RRTTFCEVS------------RADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           ++T   + +            R D   ++  + + E   V+++  G         +R+  
Sbjct: 627 KKTPITDYANVRKTGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRATG 686

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             S+ +  ++  + D +     +     +L++S  G           +    G+ ++   
Sbjct: 687 RTSMGVRGMNLSDRDEVIAMQMSTQGSDLLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYK 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL 652
                 ++V     +   ++++++++G    ++ S+I    R   G   + ++  + +  
Sbjct: 747 ITEKTGNVVGMKAVNEDSEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVAS 806

Query: 653 VVKV 656
           V KV
Sbjct: 807 VAKV 810


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 412/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDENIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|332854274|ref|ZP_08435274.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332865651|ref|ZP_08436477.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|332728090|gb|EGJ59479.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150]
 gi|332735172|gb|EGJ66252.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113]
          Length = 904

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 415/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSTDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|332876018|ref|ZP_08443804.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735884|gb|EGJ66925.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059]
          Length = 904

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 415/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/798 (31%), Positives = 418/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+   +    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDINELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/779 (30%), Positives = 398/779 (51%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  + GD + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSAGDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 VITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I       + E    
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEV 812



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V G + + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGNEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGNEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/823 (31%), Positives = 403/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  ++++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   S        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|332520258|ref|ZP_08396720.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/763 (32%), Positives = 416/763 (54%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN EI I++L+++I  PDFPTGG  +   + + E++  GRG   +R 
Sbjct: 185 NLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGG-TIYGYDGVKEAFHTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EEV +G  CI+VTEIPYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 NANIEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G+ PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGK-PQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIERFELSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E +  +L+   ++ + I  E++ V++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDILDKKDRRMSIIKEELQLVRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSKIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++            Y +   +++ + KG        +       G   + +  ++ +   
Sbjct: 594 VMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEDDVLLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT- 710
              TG+  V +  ++ K + F   +   M RG  GVR    +D    +VI       +  
Sbjct: 654 KLTTGESQVMLALKSGKAIRFEEAKTRPMGRGASGVRGIRLQDEKTDEVIGMIAVNDMDS 713

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++G  +S
Sbjct: 714 NILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVS 756



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       + + DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSKTSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 ++A+  KE D L  A       +++L    GKA           GRG      +
Sbjct: 633 RPRTNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPMGRGASGVRGI 692

Query: 593 LIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +      +++     +     +LVVS  G        +     R GK    +S  EK  
Sbjct: 693 RLQDEKTDEVIGMIAVNDMDSNILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTG 752

Query: 652 LVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +V        D + ++ ++   +  ++  +  M R   GV+L + K       +   + 
Sbjct: 753 NLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVMH 812

Query: 707 EGLTWIDSA 715
           E    +D  
Sbjct: 813 EEEEVVDET 821


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 397/768 (51%), Gaps = 30/768 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N +N        +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGD 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+DNP+ +   L+E + GPDFPTGG+++  +  I ++Y 
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYE 246

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 247 TGRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +
Sbjct: 307 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F
Sbjct: 366 LEHQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AIL++RL  L  LE  +I  E + L+ + E   ++L+S  +    I  E+ E
Sbjct: 426 GLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRDRVNQIIYEELLE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +++ F        RRT          +   + +IE+E + V +++ G+I+          
Sbjct: 486 IQKKFGDE-----RRTELLVGEV--LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +  +   + D ++  +   T D +L  +  GK Y +    +        G  I 
Sbjct: 539 NRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPIV 598

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            L+++N  + I           D    LL V+  G       S+       G   + +  
Sbjct: 599 NLLNINSGEKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKE 658

Query: 647 EEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++   + +  +   ++G +    + F+   +  M R   GVR    ++     V    
Sbjct: 659 GDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRGIRLRENDYV-VGADV 717

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +         + + + +        +  RGG G        ++G    
Sbjct: 718 LNPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSG 765



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           + ++  G ++              L A+H KEGD L  AL       +++ +  G A + 
Sbjct: 627 LFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A ++ S       ++  I L  N  +V A V +   ++ ++S KG       ++     
Sbjct: 687 NASDVRSMGRSATGVRG-IRLRENDYVVGADVLNPDSEVFIISEKGFGKRTPAADYPIKG 745

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK     +  EK   +  +  V+G + + ++ +   ++ F I+ + +  R   GV L 
Sbjct: 746 RGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLI 805

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +      +     +       A +    S N
Sbjct: 806 RIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSN 839



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 77/227 (33%), Gaps = 17/227 (7%)

Query: 459 EKIDSLLNSGKQQWNQIACEI------REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           EKI++++N   ++ +     +         +   S   ++         +   D+     
Sbjct: 607 EKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINAL 666

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            + + + + +  ++ G+        +RS+   +  +  +  +E D +  A   +    + 
Sbjct: 667 IIDQNQNVIIG-THLGYAMSFNASDVRSMGRSATGVRGIRLRENDYVVGADVLNPDSEVF 725

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++S  G     PA +       G+ ++       N  +           +++++ KG   
Sbjct: 726 IISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMI 785

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
                ++    R   G   +++  + K+  + KV         +  K
Sbjct: 786 RFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASK 832


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/768 (32%), Positives = 405/768 (52%), Gaps = 33/768 (4%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +SN  T       V  V +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++ + E
Sbjct: 1   MSNEITFDPNIGKVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+    A++KSA  VG V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG++DG
Sbjct: 61  NGIFPDKAYRKSADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AAYRYTEA+M++++  +L  ++++ V+F   Y++   EP+V P++FPNLL NG++GI
Sbjct: 121 DPPAAYRYTEAKMSKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN++E+ +A   LIDNP+  +  ++  I GPDFPT GII+  +  I  +Y
Sbjct: 181 AVGMATNIPPHNLREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIM-GQSGIRAAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  +VRAR  +EE+  G + IVVTE+PYQV K+RLIE IA  +  KRI  +  +RD
Sbjct: 240 ATGRGKIQVRARAEIEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +P +++  ++  + M+  F +    L  G VP+VM L  +L+ 
Sbjct: 300 ESNREGMRIVIELKRDANPQIILNKLYSFTQMQETFGVINLALVNG-VPKVMTLKEMLEH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++  + EV+ +R+ + ++    R  IL+GL IA   IDE+I  IR      + K  ++ R
Sbjct: 359 YIEFQSEVIRKRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L E Q DAI+ +RL  L  LE  +I+ EL  LL + ++ +++L         +  E+ 
Sbjct: 419 FGLDELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELA 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            +++ F        RRT   E+         + +I +E   V +++ G+I+         
Sbjct: 479 AIRDKFGDE-----RRT---EILAVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKT 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
            K     ++ +  +E D  +    A T D +L ++  G+ Y L    +  G     G  I
Sbjct: 531 QKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSKGTNI 590

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ +  ++ + +      +D    L++V+  G              + G   + +   
Sbjct: 591 VNLLPIEGDEKVTSMIRITDFDPDQYLVMVTKSGMIKRTVLDAYKNVRKNGLIAISLLEG 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-K 704
           +++  V    G+  + V   N   + F  +    +SR  KGVR    +  G  +V+   +
Sbjct: 651 DELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLSRSAKGVRAIKLR--GDDEVVGMAR 708

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + EG T +    R   R        +  RGG G +        G  ++
Sbjct: 709 LREGATVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVSDEKGHVVA 756



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 14/219 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E      + ++    + +   V+++  G I+     +        L A+   EGD L  
Sbjct: 596 IEGDEKVTSMIRITDFDPDQYLVMVTKSGMIKRTVLDAYKNVRKNGLIAISLLEGDELAW 655

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
               +   ++++ + +G A      +        + ++  I L  + ++V          
Sbjct: 656 VRLTNGNSQLIVATRNGMAIRFDENDARPLSRSAKGVRA-IKLRGDDEVVGMARLREGAT 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           ++ V+ +G     +  +    TR G   +     ++   VV V      D + ++  +  
Sbjct: 715 VMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVSDEKGHVVAVKVVDEDDDLILISNDGV 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++   +  +  MSR   GV++   +  G + V+ F   +
Sbjct: 775 IIRIRVSDVNVMSRYAGGVKVMRVQ--GDARVVTFARAD 811


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 411/756 (54%), Gaps = 32/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KSA
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+GK HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +L  +D+D VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN+
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A+I+NP I++E+++ ++ GPDFPTGG +  S++ I E+Y  GRG  +VRA+ 
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +    
Sbjct: 242 RVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +P +++  ++  + ++T F +N+  +  G  P+V+ L  +++ +L HR+EV+ RRS
Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L+GLLIA  +IDE+IA+IR  +     +  ++ RF L+E Q  AIL+
Sbjct: 360 LFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E   L+ E  ++ ++L    +   ++  ++  VKE +  +    
Sbjct: 420 MRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHF 545
            RRT   E          + +IE EP+ + ++ +G+++ L   S                
Sbjct: 476 -RRTLITEFEET---FNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   D +LL +  G+ Y L    L     +  G  ++ L+ L  ++++ 
Sbjct: 532 KEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVA 591

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                   D    L+  + +G        E     + G   +++   +++  V      D
Sbjct: 592 ALLSVRGLDQEGHLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPED 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAG 716
              +  +  + + F ++++    R  +GV    +K  +  +  ++  K  E +  +  + 
Sbjct: 652 EAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVST 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           R Y +        L  RGG+G +      + G+  +
Sbjct: 712 RGYGKRTPLSEYPLQGRGGMGVITYAVSTKVGRLAA 747



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 19/201 (9%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + RG ++              L A+  +EGD L     +   D  +L + +G+A   
Sbjct: 606 VFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRF 665

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIA 633
           P   + +     + +  +        +V+  V        LL VS++G       SE   
Sbjct: 666 PLEEVRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVDLLSVSTRGYGKRTPLSEYPL 725

Query: 634 NTRKGKTFL------KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
             R G   +      KV     +  V    G+ + V+      +   + +I + SR   G
Sbjct: 726 QGRGGMGVITYAVSTKVGRLAALLKVR--GGEDLLVLSRRGLAIRTPVAEIRQYSRATAG 783

Query: 687 VRLQSYKDGGISDVICFKICE 707
           VR+ +  +    +V    + E
Sbjct: 784 VRVMNLPED--DEVASAFVVE 802



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 20/248 (8%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLL--AEKEKIDSLLNSGKQQWN---QIACEIREVKEI 485
           +  L++  L ++        + +LL  AE E++ +LL+            A E   VK  
Sbjct: 558 VYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGHLVFATERGLVKRT 617

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
             K      +        +     +  A+ + E   ++ +  G         +R+    +
Sbjct: 618 ALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRATGRDT 677

Query: 538 VDLSALHFKE-GDSLKIALHAH---TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +  + FK+  D +   +        D +L +ST G     P          G  +   
Sbjct: 678 QGVIGVRFKKPEDRVVSLVVVKPGEMVD-LLSVSTRGYGKRTPLSEYPLQGRGGMGVITY 736

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +           LLV+S +G A     +EI   +R   G   + +  ++++ 
Sbjct: 737 AVSTKVGRLAALLKVRGGEDLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVA 796

Query: 652 LVVKVTGD 659
               V  +
Sbjct: 797 SAFVVEEE 804


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/770 (31%), Positives = 407/770 (52%), Gaps = 38/770 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V+ V ++  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+     
Sbjct: 2   DEHIFDKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  + + +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN      + +IE++L+ + GPDFPTGG I+  +  I E+YR
Sbjct: 182 NIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTII-GKLGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GR   +VRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDE
Sbjct: 241 TGRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   +     R ++P++++  ++  + ++  F + M  L   + P+V+ L  +LK +
Sbjct: 301 SDREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQ-PKVLNLYDMLKYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ F +   + R  IL+GL+IA  NID +I+IIR        K  +++ F
Sbjct: 360 LLHQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAEF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +L+E Q  AI+++RLR+L  LE  ++++EL  L  + ++  ++L   K     I  EI E
Sbjct: 420 ALSEAQAQAIVDMRLRALTGLERSKLEAELKELHEKIKEYKAILADKKLLLGVIKNEISE 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + + +        RRT+       +     + +I  EP  +  +N G+++          
Sbjct: 480 IADKYGD-----DRRTSIG---YDEYDISMEDLIPDEPCVIARTNLGYVKRMTPDNFKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +  +   + D +K      +   +   +  G+AY L A  +   S    G AI 
Sbjct: 532 HRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKAYEIPEASRTSRGTAII 591

Query: 592 LLIDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            L+ L   + I             T  L + + KG        E     + G   + +  
Sbjct: 592 NLLQLAPGETITAVVPVKIDTLQDTDYLFMATKKGIVKKTPVKEFANIRKTGIQAINLRE 651

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++++  V        + +V    + + F    +    R   GV   S  D    +V+  +
Sbjct: 652 DDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMGVIGMSLMDE--DEVVGVQ 709

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +G T +  +     +  +     +  RGG G    K   ++G  + +
Sbjct: 710 VSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITEKTGNVVGA 759



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS----NRGWIRSLKSHSVD 539
           + F+     G +     E     +  L     E   +T++          +R     ++ 
Sbjct: 634 KEFANIRKTGIQAINLREDDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMG 693

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  +   + D +     +   D +L++S +G                G+ ++        
Sbjct: 694 VIGMSLMDEDEVVGVQVSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITEKT 753

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV 656
            ++V A   D + ++++++++G    ++ S+I    R   G   + +    K+  + KV
Sbjct: 754 GNVVGAKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIAKV 812


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
 gi|332201683|gb|EGJ15753.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47368]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIA 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I       + E    
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEV 812



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 412/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L   ++        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGFLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  +  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYDIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGFLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIA 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I       + E    
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEV 812



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
 gi|332203068|gb|EGJ17136.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47901]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTSVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTSVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 68/211 (32%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT+    S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTSVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 8   MQDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 68  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 127

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 128 TEARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNI 187

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE +   ++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 188 PPHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE+  G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 247 LRSRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 307 FVIEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQ-GGVPKILSLREILLAYIEHQKEV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR++F     + R  IL GLLIA  +IDE+I IIRN +   + +  ++++F L+E Q 
Sbjct: 366 VTRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQS 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 426 QAILDMRLRRLTGLEHDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFAD 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 486 E-----RRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D +K  +   T DR+L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 598

Query: 599 NQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G       ++     + G   L +  E+++  V 
Sbjct: 599 GETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELINVF 658

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   +  MSR   GVR  + +DG    V    + +    +
Sbjct: 659 LTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDGD-QVVGAGVVSDNDEVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 718 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAG 757



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
             E          +    ++      +  G ++              L AL+ K+ D L 
Sbjct: 596 LDEGETIQTIINVEQDHSQDSYLFFTTRLGVVKRTSVADFANIRQNGLKALNLKDEDELI 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  ++L     +V A V     
Sbjct: 656 NVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRG-VNLRDGDQVVGAGVVSDND 714

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
           ++LV++ KG       SE     R GK     +  EK   +  ++ V G + + ++    
Sbjct: 715 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGPLAGLMTVNGQEDLMIITNTG 774

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  S+  I +  R   GV++        + ++ F   E
Sbjct: 775 VIIRTSVANISQTGRSTMGVKVMRL--DQNAQIVTFTTVE 812



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE--IFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I  E    ++  +F  +   
Sbjct: 569 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINVEQDHSQDSYLFFTTRLG 625

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP------------ITVVISNRGW--------IRS 532
             +RT+  + +   +  L+   ++ E               ++ +  G+        +R+
Sbjct: 626 VVKRTSVADFANIRQNGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRN 685

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ ++GD +  A      D +L+++  G      A    +    G+ I+ 
Sbjct: 686 MSRIATGVRGVNLRDGDQVVGAGVVSDNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKT 745

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      +    L+++++ G       + I    R   G   +++    ++
Sbjct: 746 ANITEKNGPLAGLMTVNGQEDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQI 805

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 806 VTFTTVEADD 815


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
              ++ F++D + +  R   GVRL   +DG  + V+   + 
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMAVV 807



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 69/216 (31%), Gaps = 24/216 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
                   +    R   G   +++    K+  +  V
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVV 807


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/765 (35%), Positives = 417/765 (54%), Gaps = 32/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   N   +  V+ V +   +   +L Y++S I  RA+PD+RDG KPVHRRI+HAM+++G
Sbjct: 1   MEEENKRYDY-VEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G A KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RYPL+ G GNFG++DGD 
Sbjct: 60  ITSGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +++ + +D VDF   Y+ E++EPVV PS+ PNLL NG  GIAV
Sbjct: 120 AAAMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E  +A  A++DNP+I++ +L+E I GPDFPTGGII+  R+ I +++  
Sbjct: 180 GMATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIIL-GRKGIRQAFET 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R+++ VEE+  G   I+  EIPYQV K+ LI K+A LI  K I  +  + DES
Sbjct: 239 GRGSIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +    ++++  +F L+ ++T F +NM  L  G  P+ +PL  I+ +++
Sbjct: 299 NREGIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENG-RPKQLPLKDIIHDYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVSRF 421
            H+ +V+ R++ F ++    R  IL+GL IA  +IDE+I +IR+  K +      +   F
Sbjct: 358 DHQVDVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQDLCDAF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q  AIL ++LR L  LE  +I++E   LL   E +  +L +  +    I  ++ E
Sbjct: 418 GLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIEDLKDILANHDRVLQIIRDDLNE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + + +        RRT   E+S A      + +I  E + + ++  G+I+          
Sbjct: 478 IDQKYGDE-----RRT---EISDASVDMEDEDLIPVEDVIITLTESGYIKRQLVDTYRAQ 529

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
                 + +L   E DS+   +   T D +LL +  G+ Y L   N+ SG     G  I 
Sbjct: 530 NRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNVPSGSRTSKGIPIV 589

Query: 592 LLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + +   V     D +  LL V+  G       SE     R GK  + +  ++
Sbjct: 590 NLMTLEKGEKVNVLVAVPKDDESETLLFVTKNGIVKRTSVSEFENINRNGKIAISLKPDD 649

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +++ V   TG D V + G N K + F+ DQ+  M R   GV    +   G   V      
Sbjct: 650 ELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIMGRSASGV--LGFNCDGSEVVGAALSS 707

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           EG T +  +   Y +        L  RG  G        ++GK +
Sbjct: 708 EGDTVLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITEKTGKLM 752



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        +     ++    + ++  G ++                A+  K  D L+  
Sbjct: 595 EKGEKVNVLVAVPKDDESETLLFVTKNGIVKRTSVSEFENINRNGKIAISLKPDDELRFV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK 613
                 D +++  ++GKA       +   R  G +   ++  N    ++V A +      
Sbjct: 655 KLTTGQDEVIISGSNGKAVRFNEDQV---RIMGRSASGVLGFNCDGSEVVGAALSSEGDT 711

Query: 614 LLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE-EKMKLVVKVTG-DHVAVVGENRK 669
           +LVVS  G     +  +  + +  +KG + + ++ +  K+  +  VTG +   +V  +  
Sbjct: 712 VLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITEKTGKLMCMRAVTGKEDAMIVASDGI 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++  +++ +    R  +GVRL +    G + V    + +
Sbjct: 772 MIRVALENVGIYGRNTQGVRLINL--NGDAKVTRMTLVD 808


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 397/762 (52%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F ++  + R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +        G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++ +G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G + T    ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG-IRLREHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           +S KG        E     R GK      +   +   +  V  V G + + V+ ++  ++
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP-LAGVTTVDGTEDILVMTDSGVMI 773

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            F+I  + +  R   GVRL    D      +     E     D + 
Sbjct: 774 RFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSK 819


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/779 (30%), Positives = 396/779 (50%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+  RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSADDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 452/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+ K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERNKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/823 (31%), Positives = 403/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   S        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/818 (32%), Positives = 413/818 (50%), Gaps = 89/818 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  + +  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAAL-INGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+    +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTLGINIVAL-DHGQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I +
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ LN N+ I        Y+    +++ ++ G   
Sbjct: 596 GRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMATAGGIVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +  +E       G   L +  E+++  V    G + + +     +++ FS   +  M R
Sbjct: 656 KITLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGR 715

Query: 684 -GKGVRLQSYK--------------------------DGGISDVICFKICE-GLTWIDSA 715
              GVR                               D  I  V+   I +     + + 
Sbjct: 716 LATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILTAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+GK +++
Sbjct: 776 QNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 38/227 (16%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L  A  E++   V+ +  G ++ +      +  S  + AL+ ++ D L     
Sbjct: 627 NERITAILPVAAYEEDKFVVMATAGGIVKKITLTEFSRPRSSGIIALNLRDEDELIGVDI 686

Query: 557 AHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------- 600
              ++ I+L S+ G+        + A   L+    G  + L  DLN ++           
Sbjct: 687 TDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDD 746

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  +  +  ++L  +  G     +  E    +R  K  + +   E+
Sbjct: 747 NAEETLDLNIDKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSER 806

Query: 650 MKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
              VV        D + ++     L+   + ++  + R  +GVRL  
Sbjct: 807 NGKVVAAAQVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIR 853


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 416/837 (49%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL+DNP++++++L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VEE+ +  G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I++   P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ SE   +L
Sbjct: 424 MVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L +  +    I  E+  VK  F  +     RRT   E+  +        +I
Sbjct: 484 NLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRT---EIVASQVDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 AEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +     K++ F+   +  M R  +GVR      G  
Sbjct: 716 IALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 QQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHG 587
           ++  +  S  L AL  +EGD+L  A        ++L S+ GK   +      ++     G
Sbjct: 705 VQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARG 764

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                 + L   Q +++  + +S  ++L  S +G       S+     R G+  + + + 
Sbjct: 765 VRG---MRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTN 821

Query: 648 EK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           E+    +  V    G+ + ++ +   L+   +D++    R  +GV L       +
Sbjct: 822 ERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEV 876


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/762 (36%), Positives = 448/762 (58%), Gaps = 29/762 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
            GRG  R+RA + VE+       I+VT +P+QV  ++++E+IA ++ AK  + P + D+R
Sbjct: 241 TGRGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRAL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  +++R
Sbjct: 356 LVEWLEFRVKTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKASLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLGSEAKLKKLVRTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   E +   KA  +  ++  E +TVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVERAE-AKALSEHDLLPNEKVTVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K      +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                 + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V    
Sbjct: 590 TFECVLMPDDDGLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    + EG T
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEGAT 707

Query: 711 WIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LVLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 403/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I +RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      +  IE+LL  + GPDFPTGG+I+     I E+YR GRG 
Sbjct: 187 NLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMIL-GTAGINEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 246 VRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDESDRQG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L     P+V+ L  +LK +L H+ 
Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNE-PKVLNLYDMLKYYLIHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I+II   +N  + K  ++ RFSL++ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMERFSLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K+    I  EI  + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAILADKKKLLGVIRTEILLIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I      + ++  G+I+               
Sbjct: 485 GD-----DRRTSIG---FDEYDISMEDLIPVTNTVITMTKLGYIKRMSLDNFRAQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++  L   +   ++  +  G+ Y + A  +   S    G AI  L+ L
Sbjct: 537 GIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKAYEIPEASRTARGTAIVNLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y     L + + KG       ++     + G   + +  ++++  V
Sbjct: 597 QPGEKITAVIPIREYTEGHFLFMATKKGIVKKTPITDYANVRKTGLAAISLREDDELIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
            K   +  V +V +  + + F    + +  R   GV   +  DG   +VI  ++  +G  
Sbjct: 657 KKTDNNQDVFLVTKYGQCIRFKETDVRKTGRTSMGVIGMNLTDG--DEVIGMQMQSQGDA 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +           RGG G    K   ++G  + 
Sbjct: 715 LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITEKTGNIVG 756



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 80/249 (32%), Gaps = 19/249 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      A +      +     + + +G ++      
Sbjct: 574 KAYEIPEASRTARGTAIVNLLQLQPGEKITAVIPIREYTEGHFLFMATKKGIVKKTPITD 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           + L++  G+       ++         + 
Sbjct: 634 YANVRKTGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVRKTGRTSMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + +L    +++   +      L++VS KG       SE     R GK        EK  
Sbjct: 694 GM-NLTDGDEVIGMQMQSQGDALMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITEKTG 752

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +V V      + + ++     ++   +     + R   GV+L +  D  ++     K+ 
Sbjct: 753 NIVGVKAVNQDNELMLITTEGIIIRIKVSDTTLLGRITSGVKLINL-DENVTVASIAKVR 811

Query: 707 EGLTWIDSA 715
           E  + ID+A
Sbjct: 812 EDKSLIDNA 820


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 396/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +        G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++ +G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G + T    ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG-IRLREHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           +S KG        E     R GK      +   +   +  V  V G + + V+ ++  ++
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP-LAGVTTVDGTEDILVMTDSGVMI 773

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            F+I  + +  R   GVRL    D      +     E     D + 
Sbjct: 774 RFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSK 819


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDST 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSTEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 412/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ID+ EI+I+ L+E+I  PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 185 NLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGI-IYGYDGVKDAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+V+EIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KASFEEV-QGRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNG-RPQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I +IR   N D+ +  ++  F LTE Q  AI
Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIEAFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+        +L + +++ N I  E+ EV+  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKERRMNIIKEELLEVQRKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +     +I  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDDRRSVIEYAGGDVSIT--DLIPDEQVVLTISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++            Y ++  +++ + KG        +       G   + +  ++++   
Sbjct: 594 VMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPRTNGINAITIKDDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
               GD  V +  ++ K + F   +   M R   GVR     D     V    I +    
Sbjct: 654 KLTRGDSQVMLAVKSGKAIRFEESKTRPMGRNASGVRGIRLADDNDEVVGMIAINDLESE 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTEKTGQLVA 755



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 87/246 (35%), Gaps = 19/246 (7%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       +   DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSKTSKGRAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 ++A+  K+ D L  A       +++L    GKA           GR       +
Sbjct: 633 RPRTNGINAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPMGRNASGVRGI 692

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
            +  ++++ +    + D   ++LVVS KG        +     R GK    + V+ +   
Sbjct: 693 RLADDNDEVVGMIAINDLESEILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTEKTGQ 752

Query: 651 KLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            + +K  +  D + ++ ++   +   +  +  M R   GVRL   ++      +   + +
Sbjct: 753 LVAIKNVIDSDDLMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKD 812

Query: 708 GLTWID 713
                D
Sbjct: 813 ENEVED 818


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/798 (32%), Positives = 419/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+  K+    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDIKELICVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 396/762 (51%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   E  +  V+L   + + +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D +DF+D Y+  + EPVV P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E   A   L+DNP+ +   L++ + GPDFPTGG+++  +  I  +Y  GRG 
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R +  V+    G   IV+TEIPY V K++++E+IA+L+  K+I  +  +RDES  D 
Sbjct: 241 IVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++ L+ ++T F  NM  +  G  P+V+ L  IL+ +L H+ 
Sbjct: 301 MRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGA-PKVLSLKQILQYYLDHQE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  +IDEII IIR+    DK K +++ +F L++ 
Sbjct: 360 NVIRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +++SE  ++ A       +L   ++    I  E+ ++++ F
Sbjct: 420 QSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT          +   + +IE+E + + +S+ G+++               
Sbjct: 480 GDK-----RRTELLVGEV--LSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D ++  +   T D +L  +  GK Y      +        G  I  L+ +
Sbjct: 533 GIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLLGV 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + I T        +    L  V+ KG        E       G   L +  E+++  
Sbjct: 593 GAGEKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G    ++G +    + F    +  M R   GVR    ++     V    +     
Sbjct: 653 VILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREHDYV-VGSDILKPDSE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + + Y +        +  RGG G        ++G    
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGPLAG 753



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +             +     ++ +G ++              L AL+ K+ D L   + 
Sbjct: 596 EKIQTVINVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNGLIALNLKDEDELNNVIL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               D IL+ +  G + T    ++ S       ++  I L  +  +V + +     ++ V
Sbjct: 656 TSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRG-IRLREHDYVVGSDILKPDSEVFV 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           +S KG        E     R GK      +   +   +  V  V G + + V+ ++  ++
Sbjct: 715 ISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNGP-LAGVTTVDGTEDILVMTDSGVMI 773

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            F+I  + +  R   GVRL    D      +     E     D + 
Sbjct: 774 RFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSK 819


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/779 (30%), Positives = 397/779 (50%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSADDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/792 (33%), Positives = 418/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G D+  A+KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L  ++++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALI+N ++S++ L+E+I GPDFPTGGI +  R  I+++YR GRG   VRA
Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGI-INGRAGILQAYRTGRGRIYVRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  VEE  + G   +++TEIPYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   ++
Sbjct: 245 KHHVEEDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++ ++F  + ME+ F +NM  L  G+ P+++ L   L+ ++ HRREV+ 
Sbjct: 305 IELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQ-PKILDLKTALECFIRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NID +I +I+    P                    
Sbjct: 364 RRTVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQM 423

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  +++L+  Q  AIL LRL  L  LE  ++ +E   LL 
Sbjct: 424 LERAGEDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L S ++    I  E+  + E +        RRT   E++ + K      +I 
Sbjct: 484 RIAELLKILGSHERLMEVIREELEAILEEYGDE-----RRT---EITASRKDLTVADLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V IS+ G+ ++         +      SA   K+ D ++  L A+T D IL  + 
Sbjct: 536 EEDMVVTISHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTD 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +   S    G  I  ++ L+  + I T      Y+    + + ++ G  
Sbjct: 596 RGKVYWLRVFEIPVASRTARGRPIVNILPLDEGERISTILPVGGYEEDKFIFMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +        G   L +  ++ +       G D V ++    K + F  + +  M 
Sbjct: 656 KKTALTNFSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  +GVR     D G+  +      EG   + ++   Y +        +  RGG G +  
Sbjct: 716 RTARGVRGVKM-DDGVKVISLIIPQEGGKILTASENGYGKKTAVDDFPVKGRGGQGVIAQ 774

Query: 742 KGFPRSGKFLSS 753
           +   R+G    +
Sbjct: 775 QCSDRNGSLAGA 786


>gi|332667547|ref|YP_004450335.1| DNA gyrase subunit A [Haliscomenobacter hydrossis DSM 1100]
 gi|332336361|gb|AEE53462.1| DNA gyrase, A subunit [Haliscomenobacter hydrossis DSM 1100]
          Length = 845

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/767 (30%), Positives = 410/767 (53%), Gaps = 37/767 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ +  V++   ++  Y+ Y++S I  RA+PD+RDG KPV RR+++ MS++G+ +  A 
Sbjct: 3   LDQRIIPVNIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVQRRVMYGMSDLGVTYNKAH 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPLI  QGNFGNIDGD  AA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQDWSLRYPLIDPQGNFGNIDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++A+ ++  +++D V+F + +++  +EP V P++FPNLL NG +GIAVGMAT++ 
Sbjct: 123 EARMRKIADELMADLEKDTVNFTNNFDDTLTEPSVMPTRFPNLLVNGATGIAVGMATNMM 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A ID+PEI+I++L++YI+ PDFPTGGI +     I + +R GRG   +
Sbjct: 183 PHNLGEVIDGVIATIDDPEITIDELMKYILAPDFPTGGI-IYGMSGIRDGFRTGRGRVVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E    G   I++TE+PYQV  S L EKIA+L+  KRI  +  I +ES      V
Sbjct: 242 RGKVEIETTKTGKEQIIITEVPYQVNISSLEEKIADLVNEKRIDGISAISNESNRMGIRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R     +++  ++  S +++ + +N   L  G  P  + +  +++E++  R EV+
Sbjct: 302 VLDVKRDAIAKVVLSQLYKYSPLQSSYGINNVALVDG-RPYTLNIKDMIEEFIKFRLEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F ++  + R  IL+GLLIA  ++D++IA+IR     D+ +  ++S F L+E Q  
Sbjct: 361 VRRTKFDLRKAEERAHILEGLLIALDHLDQVIALIRASRTVDEAREGLMSNFGLSEIQAK 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  ++++E + +    + ++S+LNS + + + I  E+ E+K  F  +
Sbjct: 421 AILDMRLQRLTGLERDKVRNEYNEIKKLIDYLNSILNSEELRRSIIKDELAEIKANFGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                 R T  E +  D     + MI++E + + IS+ G+I+                  
Sbjct: 481 ------RRTVIEAA--DGEINMEDMIKEEEVVITISHLGYIKRTPVSEFRQQSRGGRGSR 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++     +T   +LL ++ G+ Y L    +        G AIQ ++ +   
Sbjct: 533 GSKTRDEDFIEHMFVTNTHHYLLLFTSAGRCYWLKGYEIPEAAKTATGRAIQNILAIPKE 592

Query: 600 QDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +    V        +     ++  + +G                G   + ++  +++ 
Sbjct: 593 DKVKAFIVIESLVDREFVDNHYIMFCTQQGVIKKTPVEAFSRPRAGGINAITINEGDQLL 652

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----KI 705
                 G+H V +       + F+   +  M R   GVR  +  + G   V+        
Sbjct: 653 EAWLTGGNHEVFLASRRGYAVRFNEAGVRSMGRSAAGVRGMTLAEDGKDAVVGMVCIAPD 712

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  T +  + +   +        L KRGG G    +   ++G  ++
Sbjct: 713 DKESTLLVVSEKGNGKRSEVEEYRLTKRGGKGVKTIQITDKTGMLVA 759



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 16/213 (7%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
            +L           +  + +G I+     +        ++A+   EGD L  A       
Sbjct: 602 ESLVDREFVDNHYIMFCTQQGVIKKTPVEAFSRPRAGGINAITINEGDQLLEAWLTGGNH 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV 617
            + L S  G A       + S       ++ +      +D V   V     D    LLVV
Sbjct: 662 EVFLASRRGYAVRFNEAGVRSMGRSAAGVRGMTLAEDGKDAVVGMVCIAPDDKESTLLVV 721

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIF 673
           S KGN    E  E     R GK    +   +K  ++V +      D + +   +  ++  
Sbjct: 722 SEKGNGKRSEVEEYRLTKRGGKGVKTIQITDKTGMLVAIKSVKDDDDLMITNRSGIIIRM 781

Query: 674 SIDQIPEMSRGK-GVRLQSY-KDGGISDVICFK 704
           +I  +  M R   GVR+     D  I+DV   K
Sbjct: 782 AIGGLRVMGRATQGVRVIRLDDDDDIADVTVVK 814


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRCV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/758 (32%), Positives = 413/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G+ ++ +  ++ + + F    I  M R   GVR    ++G   +VI  ++ E     +  
Sbjct: 657 GNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREG--DEVIGMEVLEDDEKVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G++   P  N+         ++  I L    +++   V +   K
Sbjct: 652 VQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRG-IRLREGDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +EGD +    
Sbjct: 645 ENDELISVQMTDGNKNMIIA-TKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/795 (32%), Positives = 412/795 (51%), Gaps = 66/795 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  VS+   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+   +
Sbjct: 4   IAKEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD AAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM +++  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    + LI+NP  +I+ L+E I GPDFPTGGI +  R  I+ +YR GRG   V
Sbjct: 184 PHNLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGI-INGRAGILMAYRTGRGRIYV 242

Query: 253 RARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+   V +       I++ EIPYQV K+RLIEKIAEL+  K+I  + +IRDES +D   
Sbjct: 243 RAKAEVVTDEKTNRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R    D+++ +++  + +++ F +N+  L   + P+V+ L  +L+ +++HRREV
Sbjct: 303 VVIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQ-PKVLNLKQMLEHFISHRREV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ + ++    R  +L+GL +A  NIDE+IA+I+    P                  
Sbjct: 362 VTRRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTIS 421

Query: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    ++ L+  QV AIL LRL  L  +E  ++ +E +  
Sbjct: 422 QFLERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEK 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +  +   +L++  +    I  E+  V   +      G  R T  + S+ D     + +
Sbjct: 482 LQQISEYLEILSNAVRLMEVIREELEAVMAEY------GDERRTDIQNSQQD--LTVEDL 533

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E   V IS+ G+ ++         +   +  +A   K+ D ++  L A+T D IL  
Sbjct: 534 INEEDRVVTISHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  GK + L    +     +  G  +  L+ L   + I +      +D    +++ +S+G
Sbjct: 594 TNAGKVFWLKVYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDRFIVMATSQG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
                  S+       G   + +   + +       G   + ++  + K   F+ +Q+  
Sbjct: 654 TVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRS 713

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           M R  +GVR     D     VI   I  +G   +  +   Y +  +        RG  G 
Sbjct: 714 MGRTSRGVRGIRMADEHR--VIAMVIPADGGKVLTVSENGYGKRTDVDDFPTKGRGSQGV 771

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+G  + +
Sbjct: 772 IAMQVSERNGGLVGA 786



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 12/205 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      + L     +++   V+ +++G ++        +  SV L A+   EGD L   
Sbjct: 626 EEGERITSILPVREFDEDRFIVMATSQGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGT 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+LLS+ GKA       + S       ++  I +     ++   +     K+
Sbjct: 686 AITDGQQDIMLLSSSGKAARFAEEQVRSMGRTSRGVRG-IRMADEHRVIAMVIPADGGKV 744

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L VS  G     +  +     R  +G   ++VS      +  V    GD + ++ +   L
Sbjct: 745 LTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERNGGLVGAVQIFDGDELMMISDQGTL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKD 694
           +    D++  +SR  +GVRL   ++
Sbjct: 805 VRTRGDEVSLLSRNTQGVRLIKVRE 829



 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 2/132 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   S  +  +   +   +   +      ++L +S +G        +  +     + 
Sbjct: 711 VRSMGRTSRGVRGIRMADEHRVIAMVIPADGGKVLTVSENGYGKRTDVDDFPTKGRGSQG 770

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           +  +     N  +V A       +L+++S +G        E  +++   +G   +KV   
Sbjct: 771 VIAMQVSERNGGLVGAVQIFDGDELMMISDQGTLVRTRGDEVSLLSRNTQGVRLIKVRES 830

Query: 648 EKMKLVVKVTGD 659
           E +  V ++   
Sbjct: 831 EHIVGVARIAEQ 842


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/798 (32%), Positives = 419/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+  K+    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDIKELICVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEELDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDSSDDAYLFFTTRHGIVKRTSIKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDSSDDAYLFFTTRHGIVKRTSIKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR--EVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEHGRTAKGL-PVVNLLK--LDEDESIQTVINVESDSSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSIKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/756 (32%), Positives = 412/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++ M EMGL       KS
Sbjct: 10  NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+V+GK HPHGD ++YDSLVR+AQPF  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 70  AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L+ +D++ VDF+  Y++ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  A + LI +P  ++ K++E++ GPDFPTGG I+  R+ I++++  GRG  ++RA+
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFIL-GRQGILDAFIRGRGQLKLRAK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++G+    I+VTEIPYQV KSRLIE  + L+  K++  + DIRDES  D   ++F 
Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F + M  +  G+  + + L  ++K ++ HR EV+ RR
Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRE-LGLVDMIKHFIDHRIEVVRRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           + + ++    R  IL G   A  ++DE+I +IR    PK    S    F  ++ Q  AI+
Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L+ L  +E  +I  EL  +     +   +L S K   + I  E++EV++ +      
Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDE--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
             RRT   E +        + ++  E + + ++  G+         R           + 
Sbjct: 485 --RRTQIIEDTG---EIRLEDLVAVEDVAITVTRGGYLKRTSVDTYRRQTRGGKGRIGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD- 601
            +  D ++  + A T   +L+ +T G+ Y L A  +      G G+ +  LI+L  +++ 
Sbjct: 540 TRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGKGKHLTNLINLQGDEEA 599

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
              ++   + +   +++V+  G     E +E      +G   + +   +++       GD
Sbjct: 600 KAFLSVKDFVANQYIVMVTKHGVIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGD 659

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAG 716
           + + +     + + F  + +  M R  +GVR  S  DG    ++  ++ E     +  A 
Sbjct: 660 NYIFLGSHEGQAIRFREEDVRAMGRQARGVRAMSLADGDY--LVGMEVVEKDGLILSIAE 717

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L  RGG G +  K   ++G+ + 
Sbjct: 718 NGYGKRTPLEDYRLTSRGGKGVINMKTTNKTGRVVG 753



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V+++  G I+           S  + A+   EGD L  A      + I L S +G+A  
Sbjct: 614 IVMVTKHGVIKKSELTEFDNPLSRGIIAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L     +V   V +    +L ++  G        +    
Sbjct: 674 FREEDVRAMGRQARGVRAM-SLADGDYLVGMEVVEKDGLILSIAENGYGKRTPLEDYRLT 732

Query: 635 TRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           +R GK  + + +  K   VV +        + +V +N K++      I +  R  +GVRL
Sbjct: 733 SRGGKGVINMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRL 792

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + +           I E     D    + 
Sbjct: 793 VNLEPDDKVAAASV-IPESDVVPDDGQETL 821



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 58/193 (30%), Gaps = 18/193 (9%)

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              IA  + E  E+      +G                 ++                 +R
Sbjct: 637 RGIIAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREED----------------VR 680

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  + A+   +GD L           IL ++ +G     P  +       G+ + 
Sbjct: 681 AMGRQARGVRAMSLADGDYLVGMEVVEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVI 740

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
            +   N    +V         +L++VS  G    +E S I    R   G   + +  ++K
Sbjct: 741 NMKTTNKTGRVVGILSVKEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDK 800

Query: 650 MKLVVKVTGDHVA 662
           +     +    V 
Sbjct: 801 VAAASVIPESDVV 813


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 LQADAILDTKLRHLAKLEEMKIRGEQDELERERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/771 (33%), Positives = 411/771 (53%), Gaps = 35/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N  V+E    +S+   L++ YL YA+S I  RA+PD+RDG KPVHRR + AM E+G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +   + KSARIVG+VIGK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++   I+  +D+D VDF   Y+   +EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LAL D+P I++ +L+  I GPDFPTG   +  R  I E+Y  
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGA-YICGRSGIREAYET 239

Query: 246 GRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +RA   VE    G    I++TEIPYQ  K+ L+EKIA L+  K+I  + ++RDE
Sbjct: 240 GRGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R+ + ++++  ++ ++ M+  F + +  +   + P ++ L  IL+ +
Sbjct: 300 SDRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNK-PMILNLKQILEHF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRF 421
           L HR+ V++RR++F +   + +  IL+GL +A  N+DE++ +I   +N  + K  +V RF
Sbjct: 359 LVHRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+  Q   IL++RL+ L  LE  +I S+ +N+L E  ++ ++L         I  E  E
Sbjct: 419 ELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQEITRLKTILADEALILGIIKDEFLE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           ++E +        RRT   +        L + +I  E + V +++ G+I+          
Sbjct: 479 IRETYGDE-----RRTVIIDAVD---DLLPEDLIAPEDMAVTVTHSGFIKRNPAALYRSQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +S     E D +     A T D  L  +  GK +      L        G+AI 
Sbjct: 531 HRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKVYQLPLVGRTARGKAIV 590

Query: 592 LLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            L++L+ ++ +            D +  +L+V+ +G        E     RKGK  L ++
Sbjct: 591 NLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRALTIN 650

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVIC 702
             +++     + GD  V +     K + F    +  M R   GVR  +  +D  +   I 
Sbjct: 651 EGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTAAGVRGITLGEDDEVVSAIV 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + +  +   G  Y +        + KRGG G +  K   R+G  +S+
Sbjct: 711 ASSNDSILVVTENG--YGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISA 759



 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEP---ITVVISNRGWIRSLKSHSV------DLSALHFKEGD 549
             + S    A L     E E      ++++ +G I+                AL   EGD
Sbjct: 594 ELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRALTINEGD 653

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +  A   +  D +LL ++ GKA      ++ +       ++  I L  + ++V+A V  
Sbjct: 654 EIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTAAGVRG-ITLGEDDEVVSAIVAS 712

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVG 665
           S   +LVV+  G        E     R GK  + +     + + +        + + ++ 
Sbjct: 713 SNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISAKQVSDEEEIMIIA 772

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++ K++  +++ +  + R  +GVRL + +  G   V+   
Sbjct: 773 DSGKMIRMNLENVRIIGRSTQGVRLINLE--GDEKVVSMD 810


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/753 (32%), Positives = 401/753 (53%), Gaps = 31/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   +++ YL Y++S I  RA+PD+RDG KPVHRR++ AM+++   F   FKKSAR+V
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE RMT+ 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE  L  ++++ VDF  TY+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ EI
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C     ++DNP IS+ +L+  I GPDFPT G I+  ++ I+++Y  GRG  ++R+R  VE
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFIL-GKQGIIDAYSTGRGIIKIRSRAFVE 248

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       I+V+EIPYQV K +L+EKIA  +  K+I  + +IRDES  D   ++    R 
Sbjct: 249 KFAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRD 308

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
               +++  ++  + ME  F + +  +  G  P+++ L G++  ++ HRRE++ RR+ F 
Sbjct: 309 AYALVILNQLYKFTQMEVSFGIILLAIVNG-RPEILTLKGMIDHFIKHRREIIVRRTIFD 367

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL  A   +DE+I +IR+    K      ++ F  +E Q  AIL++RL
Sbjct: 368 LKKAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAEFQFSEIQAQAILDMRL 427

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I +E + LL +     ++L +     + I  E+ E++  +        RR
Sbjct: 428 QRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDE-----RR 482

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           +   + +        + +I +E + V +S++G+I+          +     L+    KE 
Sbjct: 483 SEIIDDAE---EIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEE 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606
           D ++    A + D  L  +  G+ Y      +  G     G+AI  L+DL   + + T  
Sbjct: 540 DFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAIVNLLDLKKGERLATIL 599

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               Y+    +++ +  G     E          G   LK+   +++  V   +GD  + 
Sbjct: 600 PVRDYEEGKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKIRENDELIAVRVSSGDQDIF 659

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWIDSAGRSYN 720
           +  +  K + F   ++  M R   G      + G   +V+    + EG T +      + 
Sbjct: 660 LTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGN--EVVGMETLGEGATILTVTENGFG 717

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N        R G G +  K   R+G  + +
Sbjct: 718 KRTNREEYPTQARAGKGVITIKTSERNGLVVYA 750



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 14/193 (7%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+    V+ +  G+++           SV    L  +E D L  A+   + D+ + L+T
Sbjct: 604 YEEGKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKIRENDELI-AVRVSSGDQDIFLTT 662

Query: 569 D-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             GK+       L S  G   A  + I +    ++V          +L V+  G      
Sbjct: 663 KEGKSIRFKESELRSM-GRVAAGNIGIKMETGNEVVGMETLGEGATILTVTENGFGKRTN 721

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E     R GK  + + + E+  LVV        D + ++  + K++      I  + R
Sbjct: 722 REEYPTQARAGKGVITIKTSERNGLVVYAYEVTDQDELMIITGHGKIIRIRAADISVIGR 781

Query: 684 -GKGVRLQSYKDG 695
             +GV+L    +G
Sbjct: 782 NTQGVKLIDLGEG 794


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/767 (32%), Positives = 411/767 (53%), Gaps = 29/767 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+        + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G 
Sbjct: 13  SNTTRQAVSEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGN 72

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
            +    KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+A
Sbjct: 73  AYNRPHKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAA 132

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM+++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVG
Sbjct: 133 AAMRYTEVRMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVG 192

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  G
Sbjct: 193 MATNIPPHNLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTG 251

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  +VR +  +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES 
Sbjct: 252 RGTVKVRGKVEIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESD 311

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R   PD+++ +++  + +E+ + +NM  +     PQ++ L   L  +L 
Sbjct: 312 RKGIRVVIDLKRGTIPDIVVNALYKYTPLESSYGINMLAVVDN-RPQLLDLKSALSHFLE 370

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HRRE++ RR+ + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF L
Sbjct: 371 HRREIIIRRTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGL 430

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E++
Sbjct: 431 SEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIR 490

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKS 535
           + ++       +R T   +   +   + + +I  + + + +S RG+I+          + 
Sbjct: 491 DTYAT------KRRTEVLMDELEGIAI-EDLIPDDDVVITLSRRGYIKRTTLDNYQQQRR 543

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               ++ LH  + D ++  L       +LL +  GK + L    +   S    G  I  L
Sbjct: 544 GGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANL 603

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++ + T      +      L V+ +G       S      + G   + +  ++++
Sbjct: 604 LPLEKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDEL 663

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKIC 706
            +V ++   DHV +       + F+   +  M R   GV+  +    D  ++  +     
Sbjct: 664 IMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDD 723

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  +   Y +     L  L  RGG G    +  P++G  + +
Sbjct: 724 TSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 770



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 82/231 (35%), Gaps = 21/231 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   + ++ RG ++        ++    L A+  ++ D L + 
Sbjct: 607 EKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMV 666

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDS 610
              H  D ++L +  G A           R  G +   +  + L+ +  +V       D 
Sbjct: 667 REIHNDDHVVLTTGGGMAIRFAC---PDVRPMGRSATGVKGVALSGDDRVVACAVLPGDD 723

Query: 611 TCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           T   ++ +SS G             +R GK          + + +  +     + + ++ 
Sbjct: 724 TSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGAMPVRDDEALVLLT 783

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              K++  S+D++  + R   GV L    +G I  V+ F   +    ++ +
Sbjct: 784 STNKIIRMSVDEVRSVGRATMGVMLVRLDEGAI--VVGFDRVDEREVVEES 832


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 87/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
             + ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITNGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 415/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    ++KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++  +EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I I++L+++I  PDFPTGGI +   + + E+++ GRG   +RA
Sbjct: 185 NLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGI-IYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES      +++
Sbjct: 244 KSSLEEV-NGKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  G  P+++ L  I+  ++ HR EV+ R
Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKG-RPEMLNLKDIIYHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+I    N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDRFELSELQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++   + +  +L   +++   I  E+ EVKE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDILARKERRMQVIKDELLEVKEKYGDG-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
               R +  E +  D +   + MI  E + + IS+ G+I        +      V     
Sbjct: 480 ----RRSTIEYAGGDLSI--EDMIPDERVIITISHAGYIKRTSLNEYKRQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
           + +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 NTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQNLINIEQDDR 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + +  ++++   
Sbjct: 594 VKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TGD  V +  ++ K + F   +   M R   GVR  +  D     V    + +    
Sbjct: 654 KLTTGDSQVMLAVKSGKAIRFEEGKTRPMGRNASGVRGITLADDNDEVVGMISVDDMESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVA 755



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 19/235 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              +  GR       + + D+       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSKSSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 ++A+  KE D L  A       +++L    GKA     G       +   ++ +
Sbjct: 633 RPRTNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPMGRNASGVRGI 692

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              + N ++V     D     +LVVS  G        +     R GK    +S  EK   
Sbjct: 693 TLADDNDEVVGMISVDDMESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGN 752

Query: 653 VVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +V +      D + ++ ++   +   +  +  M R   GVRL + K       + 
Sbjct: 753 LVAIKNVTDDDDLMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVA 807


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  +  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKYED 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT              + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 K-----RRTELMVGEV--LTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        +   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINIESERSDDAYIFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G  + V    I +    +
Sbjct: 652 LTQEDTDIIIGTKLGYAVRFNQSSVRSMSRSATGVKGVNLREGD-AVVGARVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           R G G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRAGKGMKTANITDKNGHLAG 750



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 81/237 (34%), Gaps = 14/237 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINIESERSDDAYIFFTTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A      ++ S       ++  ++L     +V A V     
Sbjct: 649 NVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMSRSATGVKG-VNLREGDAVVGARVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  +K   +  ++ V GD  + V+ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKNGHLAGLLTVKGDEDLMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            ++  ++  I +  R   GV++    +   + ++ F         +    +   SE 
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDEN--AKIVTFTTVAAAEKEEVGADNETESEE 822



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 84/246 (34%), Gaps = 37/246 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        I  E  +   IF 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------IESERSDDAYIFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + +++   ++ +  G+      
Sbjct: 614 TTRAGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +RS+   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SSVRSMSRSATGVKGVNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++     + N  +           L+V++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANITDKNGHLAGLLTVKGDEDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK 651
              K+ 
Sbjct: 794 ENAKIV 799


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDTYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/753 (36%), Positives = 448/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLI 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  +I  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   A    +   ++ + + G++Y L    L S RG GE +   +       +    
Sbjct: 531 AGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           + D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   + +    D +  +
Sbjct: 591 MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F + ++P++S+GKG ++ S         +  ++ ++     E    +    R
Sbjct: 651 TAAGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLT-PENAITLYVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/731 (32%), Positives = 387/731 (52%), Gaps = 29/731 (3%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
            RDG KPVHRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F
Sbjct: 9   ARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDF 68

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ GQGNFG++DGDSAAA RYTE R++++A  +L  + ++ VDF   Y+  + EP
Sbjct: 69  SLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEP 128

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           +V P++ PNLL NG++GIAVGMAT+IP HN+ E+ +A L L+ +PE SI+ L+E I  PD
Sbjct: 129 LVLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPD 188

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIE 284
           FPT GI +     + + YR GRG   +RA+   E++ RG    I+V E+PYQV K  L E
Sbjct: 189 FPTAGI-IYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQE 247

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           ++AEL+  K++  +  I+DES +    ++    R   P++++ +++  + ++  F +NM 
Sbjct: 248 RMAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMV 307

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            L  G+ P++  L  ++  +L HRREV+ RR+ F ++    R  +L+GL +A  NIDE I
Sbjct: 308 ALVDGQ-PRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFI 366

Query: 405 AIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            IIR    P   K  ++S + L++ Q   IL +RL+ L  LE+ +I +E   ++A  E +
Sbjct: 367 RIIRESPTPPVAKAELMSLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVMAHIEDL 426

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L   ++    I  E+  V+E F + T LG RR+   E+  + +    + +I    + 
Sbjct: 427 LDILAKPERVSTIIGEELTAVREEFGQ-TKLGARRS---EIEHSAQDLSTEDLITPTDMV 482

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V +S+ G+I+S         K       A   KE D +     A+T D IL  S  G+ Y
Sbjct: 483 VTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGRLY 542

Query: 574 TLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAF 624
            L    + +G     G  I  +  L   + I            +     + + +S G   
Sbjct: 543 WLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRSFPKDRYVFMATSMGTVK 602

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683
                E     + G   + +   + +       G H V +  +  K + F  + +  + R
Sbjct: 603 KTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDENDVRPLGR 662

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +GVR  + +D      +     E  + + +    Y +  + +      RG  G +  +
Sbjct: 663 QARGVRGMTLEDSQSVIAMLVAEDESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 722

Query: 743 GFPRSGKFLSS 753
              R+GK +++
Sbjct: 723 QSERNGKVVAA 733



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             K+    + ++ G ++              + A++  +GD L  A        ++L S 
Sbjct: 586 FPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVMLFSD 645

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVE 627
            GKA      ++         ++ +  L  +Q ++   V  D +  +L  +  G      
Sbjct: 646 GGKAVRFDENDVRPLGRQARGVRGM-TLEDSQSVIAMLVAEDESQSVLTATENGYGKRTS 704

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
             E   + R  K  + +   E+   VV  T     D + ++ +   L+   + +I E+ R
Sbjct: 705 IVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGR 764

Query: 684 GK-GVRLQSYKDGG 696
              GV L +  +G 
Sbjct: 765 ATQGVTLIALDEGA 778


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 416/837 (49%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL+DNP++++++L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VEE+ +  G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I++   P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ SE   +L
Sbjct: 424 MVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L +  +    I  E+  VK  F  +     RRT   E+  +        +I
Sbjct: 484 NLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRT---EIVASQVDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 AEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +     K++ F+   +  M R  +GVR      G  
Sbjct: 716 IALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 QQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHG 587
           ++  +  S  L AL  +EGD+L  A        ++L S+ GK   +      ++     G
Sbjct: 705 VQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARG 764

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                 + L   Q +++  + +S  ++L  S +G       S+     R G+  + + + 
Sbjct: 765 VRG---MRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTN 821

Query: 648 EK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           E+    +  V    G+ + ++ +   L+   +D++    R  +GV L       +
Sbjct: 822 ERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEV 876


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/834 (31%), Positives = 418/834 (50%), Gaps = 107/834 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I+I++L+++I GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKELLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L +  +    I  E+  VK  F  +     RRT   E            +I
Sbjct: 484 TQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILESR---LDLTLADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      +A   KE D ++  L A++   +LL S
Sbjct: 536 TEEERVVTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELD 655

Query: 610 ---------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                                      +   + + ++KG        +       G   L
Sbjct: 656 DAEGLVIEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIAL 715

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           K+   + +       G   V +  +  K++ F   ++  M R  +GVR     +G    +
Sbjct: 716 KLEEGDTLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMRLPEG--QRI 773

Query: 701 ICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I   I E G   + ++ R Y +           RGG G +      R+G  + +
Sbjct: 774 ISMLIPEPGAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGA 827



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 94/247 (38%), Gaps = 17/247 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSK-STDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-- 521
           L+ G++    +  ++  +++  ++   +L        E    D         EK+  T  
Sbjct: 626 LDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEHDDVDDVEGDDDSDEKDEPTGA 685

Query: 522 --VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
              + + +G ++        +  +  L AL  +EGD+L  A        +++ S  GK  
Sbjct: 686 YIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDTLIAAAVTDGAQEVMMFSDGGKVI 745

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 +     +   ++ +  L   Q I++  + +   ++L  S +G        E   
Sbjct: 746 RFKESKVRIMGRNARGVRGM-RLPEGQRIISMLIPEPGAQILTASVRGYGKRTAMEEFPR 804

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  + + + E+    +  V  + G+ + ++ +   L+   +D++  + R  +GV 
Sbjct: 805 RGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVT 864

Query: 689 LQSYKDG 695
           L     G
Sbjct: 865 LIKLSKG 871


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 418/760 (55%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     ++R  IL+GLL+A  ++DE+I+IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ ++K  ++ 
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +  ++  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + + T        D    L  V+ +G      ESE     + G   L +   +++  V+
Sbjct: 592 GEIVQTIISQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQNGLKALNLKDGDELINVI 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  G++  ++G      + F+   +  MSR   GVR  + ++G    V   +I +    +
Sbjct: 652 RTNGNNDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREGD-EVVGASRISDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G+   
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAG 750



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 12/209 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         Q    +KE     ++ +G ++              L AL+ K+GD L 
Sbjct: 589 LDEGEIVQTIISQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQNGLKALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  + I++ +  G +       + S       ++  ++L    ++V A       
Sbjct: 649 NVIRTNGNNDIIIGTKTGYSVRFNESAVRSMSRSATGVRG-VNLREGDEVVGASRISDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK     +      ++  +  V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLAGLATVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            ++  ++  I +  R   GV++       
Sbjct: 768 VIIRTNVASISQTGRATLGVKIMKLDQDA 796



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 81/246 (32%), Gaps = 27/246 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE--IFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I+    + KE  +F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGEIVQTIISQSGHDDKESYLFFVTRQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT   E S   +  L+   ++     + +            +  G+        +RS
Sbjct: 619 VVKRTLESEFSNIRQNGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRS 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+ 
Sbjct: 679 MSRSATGVRGVNLREGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      +    ++V++  G       + I    R   G   +K+  + K+
Sbjct: 739 ANITEKNGQLAGLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAKL 798

Query: 651 KLVVKV 656
                V
Sbjct: 799 MTFALV 804


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/816 (31%), Positives = 411/816 (50%), Gaps = 89/816 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KKS
Sbjct: 7   DVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI++ +I+I++L+E+I GPDFPT GI +  R+ I+++Y  GRG  +VRA+
Sbjct: 187 LGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGI-INGRKGIIDAYHTGRGKIKVRAK 245

Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +E   + G   IVV E+PYQV K+RLIEKIAE +  K+I  +  +RDES +D   ++ 
Sbjct: 246 ADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMVV 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + M+  F +N   L     P++  L  +L+ ++ HRREV+ R
Sbjct: 306 EVKRGEVGEVVLNNLYAQTQMQVTFGINAVAL-DHGQPKLFNLKEMLEAFILHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL I+  NI+ IIA+IR+   P                     
Sbjct: 365 RTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAML 424

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                +++ +TE Q  AIL+LRL+ L  LE  +I +E   LL  
Sbjct: 425 EASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLEI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L + ++    I  E+ E+K  F+       RRT   E++ ++     + +I +
Sbjct: 485 IAALLFILENPERLMEVIREELEEIKANFADP-----RRT---EITASETDLSIEDLITE 536

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      +A   K+ D ++  L A T D IL  ST 
Sbjct: 537 EDVVVTLSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTR 596

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S +  G  I  ++ L   + I        Y     + + ++ G   
Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYADDKFVFMATANGTVK 656

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ------ 677
               S        G   + ++ + ++  V    G + + +  +  K++ F   +      
Sbjct: 657 KTALSAYSRPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLD 716

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR    K+G    V      E    + +   
Sbjct: 717 ENGAPVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGE-KVVSLIIPNETGHILTTTEN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK + +
Sbjct: 776 GYGKRTPLEDYSSKSRATQGVISIKVSERNGKVVGA 811



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++        +  +  L A++  E + L   
Sbjct: 626 EEGERITAILPVRDYADDKFVFMATANGTVKKTALSAYSRPRNSGLIAINLNEDNELIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                ++ I++ S  GK                              +   R  G     
Sbjct: 686 GITDGSNEIMIFSDAGKVVRFKEAEESAVLDENGAPVLDEEGNPEIKVKGVRAMGRTATG 745

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +  I L   + +V+  + + T  +L  +  G        +  + +R   G   +KVS   
Sbjct: 746 VRGIKLKEGEKVVSLIIPNETGHILTTTENGYGKRTPLEDYSSKSRATQGVISIKVSERN 805

Query: 649 K--MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  V   T D + ++     L+   + ++  + R  +GV L    +G
Sbjct: 806 GKVVGAVQVDTNDEIMLITNRGTLVRTRVSEVSVVGRNTQGVTLIRTAEG 855


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/771 (33%), Positives = 411/771 (53%), Gaps = 35/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S ++ L   N++  +L   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM+EMG
Sbjct: 1   MSATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +       KS+RIVGEV+GK HPHGD S+YD+LVR+AQ F  R+ L+ GQGNFG++D D 
Sbjct: 61  VQPNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+ ++A  +L+ +D D VDF   Y+ ++ EP+V P++FPNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E   A +A I+NPEI ++ L+++I GPDFPTG  I+     I ++Y  
Sbjct: 181 GMATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTG-GIILGVGGIRDAYAT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ---KSRLIEKIAELIIAKRIPLLEDIR 302
           GRG  RV+AR  +E + +G   IVVTE+PYQV+      LI+KIA+L+  K+IP + D+R
Sbjct: 240 GRGRVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES       +    R + P +++  ++  + M+T F +NM  L    VP+ + L  ++ 
Sbjct: 300 DESDRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDN-VPKTLSLREVIG 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++ H+REV+ RR+ + ++  + R  IL+GLLIA  NIDE+IAIIR        +  +V+
Sbjct: 359 RYVDHQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q +AIL + L  L  LE  +++ E  +L+    ++  +L    +Q   I  E+
Sbjct: 419 RFELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERIRELREILGDEDRQMAIIKEEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531
           +E+ + +      G  R T    S A+     + +I  + + + I+  G+I+        
Sbjct: 479 QEISDAY------GNERRTAI--SYAEGEIDIEDLIADQQMVITITKTGYIKSLPLATYR 530

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             +   V ++ +  K+GD ++      T D +L  +  GK Y      L   S    G A
Sbjct: 531 QQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVYELPEASRTAKGRA 590

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVS 645
           +  ++ L   + + +      +     LL  + KG     E        +  G   +K+ 
Sbjct: 591 LVNILPLREGERVQSVLSTRDFSEAPYLLFATRKGTVKKTELQAYNTPIKADGIIAIKIR 650

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++++  V +V  GD V +V      + FS      M R   GVR     D G  +VI  
Sbjct: 651 DDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDVGDSG--EVIAM 708

Query: 704 KIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I  +    +      + +           RG  G    +     G    +
Sbjct: 709 DIARDDQDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGA 759



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 70/213 (32%), Gaps = 17/213 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV-------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           + P  +  + +G ++  +  +         + A+  ++ D L         D ++++S  
Sbjct: 614 EAPYLLFATRKGTVKKTELQAYNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRA 673

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G        +    R  G     +  ++     +++   +      LLV++  G      
Sbjct: 674 GLTVRFSEQD---ARSMGRDTSGVRGMDVGDSGEVIAMDIARDDQDLLVITENGFGKRTR 730

Query: 628 ESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E     R  KG   ++++         +V      +  + +N  +    +  I    R
Sbjct: 731 IDEYRKTARGAKGVRTIRLTEARGGLAGALVVREHQELVFISQNGMVQRTGVRGINRYGR 790

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             +GV++ + ++      I   +       D A
Sbjct: 791 ASQGVKVMNVREDDSVRAIALVVESDTAEADEA 823



 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 10/173 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGD 549
                 R D   +    +++    +++S  G          RS+   +  +  +   +  
Sbjct: 644 IIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDVGDSG 703

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +     A     +L+++ +G                 + ++ +        +  A V  
Sbjct: 704 EVIAMDIARDDQDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGALVVR 763

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
              +L+ +S  G         I    R   G   + V  ++ ++ +  V    
Sbjct: 764 EHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVESD 816


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 18/226 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
              ++ F++D + +  R   GVRL   +DG  + V+   + E    
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMAVVEPEEV 812



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
                   +    R   G   +++    K+  +  V  + V
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEV 812


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/840 (31%), Positives = 425/840 (50%), Gaps = 108/840 (12%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TDLAREVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID+  ++ + L+EYI GPDFPT GI +  R  IV++YR GRG  
Sbjct: 182 IPPHNLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGI-INGRAGIVQAYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E   + G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++ 
Sbjct: 241 YMRARAEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  + ++++ +++  + ME+ F +N   L  G+ P+++ L  +L  ++ HRR
Sbjct: 301 MRVVIELRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------ 420
           EV+ RR+ F ++    +  +L+GL +A  NID +I +I+      + K  ++ +      
Sbjct: 360 EVVTRRTVFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGD 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  LE  ++ ++ 
Sbjct: 420 VLQMLERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  +L + ++    I  E++ V+E ++       RR+   E+  + +    
Sbjct: 480 QELLEQIAELLKILGNPERLMEVIREELQAVREEYADE-----RRS---EIVASRQDFSM 531

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +SN G+         R+ K      SA   K+ D ++  L A T D +
Sbjct: 532 EDLIAEETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTL 591

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQDIVTAFVYDST--------- 611
           LL +  GK + L    L  G     G+ I  L+  L + + I      D+          
Sbjct: 592 LLFTDAGKVFWLRTFELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGG 651

Query: 612 ------------------------------------CKLLVVSSKGNAFIVEESEIIANT 635
                                                 + + +S G       +      
Sbjct: 652 EEEEIVDADDVIDAVDDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPR 711

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             G   +K+   E +  V    G + + +V  N K + F   ++  MSR  +GVR     
Sbjct: 712 SSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRGIKLA 771

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G +  +      E    + ++   Y +           RGG G +      R+G+ + +
Sbjct: 772 EG-VDLISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVGA 830



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 19/256 (7%)

Query: 458 KEKIDSLLNSGKQQWNQIA--CEIREVKEIFSKSTDLGRRRTTFCEV-----SRADKATL 510
              +   L + ++    +    E+   ++   +  ++         V     S  +    
Sbjct: 620 IVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVIDAVDDEADSEVEGDVE 679

Query: 511 QQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             A     P   + ++ G ++        +  S  L A+  +EG+ L         + I+
Sbjct: 680 TVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHLVNVAITQGHEDIM 739

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           L++ +GKA       +         ++  I L    D+++  V +   ++L  S  G   
Sbjct: 740 LVARNGKAVRFHQSKVRVMSRLARGVRG-IKLAEGVDLISLIVPEENGQILTASEHGYGK 798

Query: 625 IVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
               ++     R  +G   + ++    ++    +V G+  + ++     L+   ++Q+  
Sbjct: 799 RTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQVST 858

Query: 681 MSR-GKGVRLQSYKDG 695
             R  +GVRL    DG
Sbjct: 859 SGRNTQGVRLIRLADG 874


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVT--GDHVAVVGENR 668
           ++L+++ KG       +E     R GK     K++ +  +   +      + + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGNEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGNEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 409/756 (54%), Gaps = 29/756 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             +S+   + + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KK AR
Sbjct: 6   HHISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCAR 65

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD+LVR+AQ F  R PL  GQGNFG+IDGD+ AA RYTE RM+
Sbjct: 66  IVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMS 125

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  +D++ VDFR  Y+    EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 126 RLASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 185

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L +ID+P++ I+ LL  I GPDFPTGG I    + + ++Y  GRG  +VR +  
Sbjct: 186 ELCNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVG-QGLYDAYTKGRGTVKVRGKVE 244

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +G+  IV+ EIP+ + KS L+EKIA L+  ++I  + D+RDES      V+    
Sbjct: 245 IEERKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELK 304

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + + P++++ +++  + +ET F +NM  +     PQ++ +   L  +L HRREV+ RR+ 
Sbjct: 305 KGVIPEIIINALYKFTPLETSFGINMLAVVDN-RPQLLTIKSALTYFLDHRREVIVRRTR 363

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434
           F +   + R+ IL GL+ A  +IDE++ +IR+   P       + RFSL+E Q  +IL++
Sbjct: 364 FELNKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIERFSLSEIQAQSILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +++ E+  L  +    +S+L   K  W  I  E+  +KE+++       
Sbjct: 424 RLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILWGVIRDEVTGIKEMYTTPRRTEV 483

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
            R T   +         + +I  + + + +S RG+I+          +     ++ LH  
Sbjct: 484 IRETLTNIE-------IEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGGKGVAGLHTS 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ---D 601
           E D ++  +       +LL +  G+ + L    +   S    G  I  ++ L   +    
Sbjct: 537 EDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIANIVPLEKEEWVTT 596

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
           I+T   +      L  + KG       S    + R G   + +  ++++ +V +VT +  
Sbjct: 597 ILTVREFSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELIMVKEVTNNDF 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK--DGGISDVICFKICEGLTWIDSAGR 717
           + +       + FS + +  M RG  GV+  + +  D  ++ +I  +  +    +  +  
Sbjct: 657 IVLATAEGFAIRFSCEDVRNMGRGAAGVKGIALRPGDSVVACLILQEKQDTPAIMTVSNL 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +  L  +  RGG G +  K   ++G  + +
Sbjct: 717 GYGKRTSIDLYRVQTRGGKGIINFKVTQKTGLVIGA 752



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 17/225 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
              E        L           +  + +G ++        +S    L A+  +E D L
Sbjct: 586 VPLEKEEWVTTILTVREFSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDEL 645

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            +       D I+L + +G A      ++ +  G G A    I L     +V   +    
Sbjct: 646 IMVKEVTNNDFIVLATAEGFAIRFSCEDVRNM-GRGAAGVKGIALRPGDSVVACLILQEK 704

Query: 612 CK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV---KVTGDH-VAVV 664
                ++ VS+ G             TR GK  +     +K  LV+    V+ D+ + ++
Sbjct: 705 QDTPAIMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQKTGLVIGAKPVSDDNALVLL 764

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
               K++  S+D++    R   GVRL    DG    V+ F   +G
Sbjct: 765 TSTNKIIRMSVDEVRSAGRATMGVRLVKLDDGAY--VVGFDTVDG 807


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 412/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +++I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDENIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I       + E    
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEV 812



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDENIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/753 (36%), Positives = 448/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLI 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E+  ++++L S ++    +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  +I  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   A    +   ++ + + G++Y L    L S RG GE +   +       +    
Sbjct: 531 AGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           + D T KLL+ S  G  F+   SE+++  R GK  L + S  K+   + +    D +  +
Sbjct: 591 MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F + ++P++S+GKG ++ S         +  ++ ++     E    +    R
Sbjct: 651 TAAGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLT-PENAITLYVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  E+++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEEDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEEDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++S ++    I+ E +    K +F  +     +RT     S      L    +++E   V
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEEDELV 651

Query: 523 VI------------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            +            ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/758 (34%), Positives = 409/758 (53%), Gaps = 30/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E  V  V++   + + YL YALS I  RA+PD+RDG KPVHRRI+ AMSE G D+   +
Sbjct: 1   MESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG+IDGD+ AA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++A  +L  +D++ VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 121 EVRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+C A LA I NP+IS+ +L+  + GPDFPT G  +   + I E+YR G+G  R+
Sbjct: 181 PHNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAG-FIYGSDGIAEAYRTGKGLIRL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E+ G G   I++ E+PYQV K +LIE+I EL+  K+I  + DIRDES  +   V
Sbjct: 240 RARTFLEQRG-GREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +      ++  +F  ++M+  + +N+  +     P+++ L  +L E+L HRREV+
Sbjct: 299 VIQLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNN-RPELLSLKDLLTEFLKHRREVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL GL IA  ++D+IIA+IR+       +  +V RF+LTE Q  
Sbjct: 358 VRRTLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVERFTLTEVQAQ 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  LE  +I  E + LL +  +   +L +    +  I  ++ ++++ +   
Sbjct: 418 AILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILANEALVYQLIEADLIDLRDRYGDP 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+         + +I  E + V +S++G+I+          +      +
Sbjct: 478 -----RRT---EIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNPLNLYRSQRRGGKGRT 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +  KE D +     A T +  L+ S  G+ Y L    +   S    G+AI  L++    
Sbjct: 530 GMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPSARGKAIVNLLNFGSQ 589

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T      +     L++ + +G     E          G     +   +++  V   
Sbjct: 590 EKLTTILPIREFVPEHYLVMATKRGIIKKTELMNFSRPRSGGLIACTLDEGDELVSVALT 649

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            G+  V +     K++ F+   + +M R  +GVR  +  +      +     EG   +  
Sbjct: 650 DGNKEVFLGTSLGKIIRFAEQDVRDMGRSARGVRGMTVAEDDCIVGMEILSAEGA-ILTV 708

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +        L KRGG G L  +   R+G  + 
Sbjct: 709 TANGYGKRTRHEEYRLQKRGGSGLLALRITDRNGPVVG 746



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 12/186 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E   V+ + RG I+        +  S  L A    EGD L           + L ++ G
Sbjct: 603 PEHYLVMATKRGIIKKTELMNFSRPRSGGLIACTLDEGDELVSVALTDGNKEVFLGTSLG 662

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K       ++         ++ +  +  +  IV   +  +   +L V++ G        E
Sbjct: 663 KIIRFAEQDVRDMGRSARGVRGM-TVAEDDCIVGMEILSAEGAILTVTANGYGKRTRHEE 721

Query: 631 IIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G   L +   ++    + ++     D + ++ +  K++   +  I  + R  +
Sbjct: 722 YRLQKRGGSGLLALRITDRNGPVVGIIQVTEDDEIMLITDRGKIIRLPVTGISLIGRVTQ 781

Query: 686 GVRLQS 691
           GV+L  
Sbjct: 782 GVKLID 787


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 414/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+  V + +        RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDG-----RRTEIIESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+ N+ +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDESDDNDDSADSNLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 39/243 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++ +            L A+   E D+L   
Sbjct: 629 DANETVTAILPLTEFPENHYVFMATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDES 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CFK 704
             +
Sbjct: 869 SIE 871


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 396/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +  +        L    E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   ++ E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLV---PFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        YD+   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIRDYDAAPYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S++DG   +++   +
Sbjct: 679 LIGAELVSADDDLLLISKKAQSIRFTATDDTLRPMGRATSGVKGMSFRDG--DELLSMNV 736

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 737 VRPGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 83/259 (32%), Gaps = 27/259 (10%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   +    L     +  P  V+ +  G ++      
Sbjct: 595 KAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRDYDAAPYLVLATQGGLVKKTSLKD 654

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 655 YDSPRSGGVIAINLRETDNGADDELIGAELVSADDDLLLISKKAQSIRFTATD-DTLRPM 713

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 714 GRATSGVKGMSFRDGDELLSMNVVRPGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAA 773

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGI 697
             V     +   + V   D +  +     ++   +++I +  R   GV+L +   +D  +
Sbjct: 774 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLGKRDAVV 833

Query: 698 SDVICFKICEGLTWIDSAG 716
           +     +       +++AG
Sbjct: 834 AVARNAEAGREAEEVEAAG 852


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/827 (32%), Positives = 406/827 (49%), Gaps = 101/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           R+ F ++    R  IL+GL IA  NID +I +IR     +                    
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 418 --------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVR 715

Query: 680 EMSR-GKGVRLQSY--------------------------------KDGGISDVICFKIC 706
            M R   GVR                                    KD  +S VI     
Sbjct: 716 AMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEG 775

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + LT        Y +        +  R   G +  K   R+GK +++
Sbjct: 776 DILTV---TQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 42/219 (19%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGR 705

Query: 572 AYTLPAGNLLSGRGHGEAIQLL------------------------------IDLNHNQD 601
                   + +       ++ +                              + L+ +  
Sbjct: 706 VVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKD-R 764

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVT 657
           +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V    
Sbjct: 765 VVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEE 824

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            D + ++ +   L+   + ++  + R  +GVR+    + 
Sbjct: 825 TDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAED 863


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/823 (31%), Positives = 402/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDG---------------------------GISDVICFKICEGL-T 710
            M R   GVR                                      V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   S        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHG-EAIQLLIDLN-------------------------HNQDIV 603
              +   A   +     G   I+L                                  +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 397/760 (52%), Gaps = 34/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 7   RIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN
Sbjct: 127 MSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+
Sbjct: 187 LGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V   
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  +ID II IIR     D  K  +++ + L++ Q  AIL
Sbjct: 365 TEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F      
Sbjct: 425 DMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 482 --RRTELMVGEV--LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMG 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++  L   T D +L  +  GK Y + A  +        G  +  L+D++ ++ I
Sbjct: 538 VHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISADEKI 597

Query: 603 VTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            T     +          L  ++ +G       SE     + G   + +   +++  V+ 
Sbjct: 598 QTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLA 657

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI- 712
                  ++G +    + F    I  M R   GVR    +D     VI   I E  + + 
Sbjct: 658 TDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDY--VIGSAILEPESKVF 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        +  RGG G        ++G    
Sbjct: 716 VISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566
              +KE     I+ +G ++              L A+  ++GD L   L    +  I++ 
Sbjct: 608 VQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLATDDSKNIIIG 667

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A +    ++ S       ++  I L  N  ++ + + +   K+ V+S  G     
Sbjct: 668 THQGYAVSFDEKDIRSMGRSAAGVRG-IRLRDNDYVIGSAILEPESKVFVISENGYGKQT 726

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             SE     R GK     +  EK   +  +  V GD  + V+ +   ++ F I  + E  
Sbjct: 727 AASEYPIKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKISDVSETG 786

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GVRL +     I   +     E 
Sbjct: 787 RATLGVRLINLGADSIVSTMTKVEPED 813


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/823 (31%), Positives = 402/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/762 (36%), Positives = 451/762 (59%), Gaps = 29/762 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
            G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA L+ AK  ++P + D+R
Sbjct: 241 TGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D ++LM+ +F  +D+E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRNL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWLA R + + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++R
Sbjct: 356 LVEWLAFRVQTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELI 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   + +   KA  +  ++  E ITVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVQRAE-AKALTETELLPNEKITVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K A    +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +     + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V    
Sbjct: 590 NFECVLLPDDDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I EG T
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGAT 707

Query: 711 WIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LVLQAGKRTLSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/823 (31%), Positives = 402/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/827 (32%), Positives = 406/827 (49%), Gaps = 101/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           R+ F ++    R  IL+GL IA  NID +I +IR     +                    
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 418 --------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVR 715

Query: 680 EMSR-GKGVRLQSY--------------------------------KDGGISDVICFKIC 706
            M R   GVR                                    KD  +S VI     
Sbjct: 716 AMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEG 775

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + LT        Y +        +  R   G +  K   R+GK +++
Sbjct: 776 DILTV---TQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 42/219 (19%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGR 705

Query: 572 AYTLPAGNLLSGRGHGEAIQLL------------------------------IDLNHNQD 601
                   + +       ++ +                              + L+ +  
Sbjct: 706 VVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKD-R 764

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVT 657
           +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V    
Sbjct: 765 VVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEE 824

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            D + ++ +   L+   + ++  + R  +GVR+    + 
Sbjct: 825 TDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAED 863


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/824 (31%), Positives = 412/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA ID  EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/532 (16%), Positives = 184/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATSISSRSWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 411/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++N+  V+L   + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 4   AKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 64  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 124 EARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L++NPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 184 PHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  V E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIA+IR     D+ K  M+ RFSL++ Q  
Sbjct: 362 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMERFSLSDRQAQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E  +LL     +  +L + ++    I  E++E+ + F   
Sbjct: 422 AILDMRLRRLTGLERDKIENEYQSLLELIADLKDILANPQRVLEIIQTELQELGQRFGDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E I + ++N G+I+          +     + 
Sbjct: 482 -----RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRVANSEFRAQRRGGRGVQ 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++ N
Sbjct: 535 GMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSN 594

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I               L   +  G       +        G   + +   +++  VV+
Sbjct: 595 ERIEAIISASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIRANGLIAIGLRENDELVNVVE 654

Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G  V ++G  N   + F  + + +M R   GVR    ++     V    I E    + 
Sbjct: 655 TNGQDVMIIGTHNGYSVTFKEELVRDMGRTAAGVRGIRLREDDYV-VGASVIKEDSEVLV 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 714 ITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAG 752



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
                R +         ++       +  G ++     +        L A+  +E D L 
Sbjct: 591 IDSNERIEAIISASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIRANGLIAIGLRENDELV 650

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D +++ + +G + T     L+   G   A    I L  +  +V A V     
Sbjct: 651 NVVETNGQDVMIIGTHNGYSVTFKE-ELVRDMGRTAAGVRGIRLREDDYVVGASVIKEDS 709

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++LV++  G     + SE     R GK      +   +     L      + + ++ +  
Sbjct: 710 EVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGKEDIMLITDKG 769

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++ F+++ + +  R   GVRL   ++G  + V+     +
Sbjct: 770 VIIRFNVETVSQTGRATLGVRLMKMENG--AKVVTMATVD 807


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 411/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/752 (37%), Positives = 444/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTEREE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   + L    +I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G    +  +
Sbjct: 591 MAADDQKLLMASDVGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 416/837 (49%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL+DNP++++++L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VEE+ +  G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I++   P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ SE   +L
Sbjct: 424 MVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L +  +    I  E+  VK  F  +     RRT   E+  +        +I
Sbjct: 484 NLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRT---EIVASQVDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 AEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +     K++ F+   +  M R  +GVR      G  
Sbjct: 716 IALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 QQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHG 587
           ++  +  S  L AL  +EGD+L  A        ++L S+ GK   +      ++     G
Sbjct: 705 VQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARG 764

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                 + L   Q +++  + +S  ++L  S +G       S+     R G+  + + + 
Sbjct: 765 VRG---MRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTN 821

Query: 648 EK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           E+    +  V    G+ + ++ +   L+   +D++    R  +GV L       +
Sbjct: 822 ERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEV 876


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAG 750



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 20/241 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK   T         +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAGLMTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            ++  ++  I +  R   GV++        + ++ F      T + +A +    +EN+  
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRL--DQDAKIVTF------TTVTAAEKEEVGTENETE 819

Query: 728 G 728
           G
Sbjct: 820 G 820



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 82/247 (33%), Gaps = 27/247 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E  +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGESIQTIINVESERSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRS 532
             +RT+  E +              +   +   + E++   ++ +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASVITDQDEVLIITDKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + K+
Sbjct: 739 AKITEKNGSLAGLMTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKI 798

Query: 651 KLVVKVT 657
                VT
Sbjct: 799 VTFTTVT 805


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/779 (30%), Positives = 398/779 (51%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSADDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/752 (37%), Positives = 439/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y  GRG
Sbjct: 182 TDIPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA     ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTERAE-AKAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI--CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G   +    +   +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSVTLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/779 (30%), Positives = 396/779 (50%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+  RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSADDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 412/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    + ++L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLANILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 184/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLIFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/758 (32%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  NPEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYHYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G  ++ +  ++ + + F  + I  M R   GVR    ++    +VI  ++ E     +  
Sbjct: 657 GSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 652 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F I+ + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 645 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/824 (31%), Positives = 417/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G
Sbjct: 1   MTDS---IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G  + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  ITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVAL-DHGQPRLFNLKQIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------- 418
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+I IIR   + K           
Sbjct: 356 MHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISRPW 415

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                      S + L+  QVDAIL LRL  L  L   ++ +E 
Sbjct: 416 KLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  ++NS ++    I  E+ +V+  F+       RRT   E++ A      
Sbjct: 476 KELLVKIAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDKFVIMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+   
Sbjct: 648 AGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +   
Sbjct: 708 VRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSDDNAEETLDLNIDKVVSLVVPKNDG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 38/233 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A L  +  E++   ++ +  G ++ +      +  S  + AL+ ++ D L   
Sbjct: 623 QENERITAILPISAYEEDKFVIMATAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGV 682

Query: 555 LHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ--------- 600
                ++ I+L S+ G+        + A   L+    G  + L  D+  ++         
Sbjct: 683 DITDGSNEIMLFSSQGRVVRFAESAVRAMGRLATGVRGIKLALTNDIADDESAVEIEEVS 742

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  V  +   +L  +  G     + SE    +R  K  + +   
Sbjct: 743 DDNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVS 802

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           E+   VV  T     D + ++ +   L+   + ++  + R  +GVRL    + 
Sbjct: 803 ERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAED 855


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/772 (30%), Positives = 387/772 (50%), Gaps = 37/772 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             +    + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM + G  
Sbjct: 36  ERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYR 95

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL+ GQGNFG+   D AA
Sbjct: 96  PDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGAA 155

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM  +A  +++ +++D VDF   Y+ +  +P V PS+FPNLL NG++GIAVGM
Sbjct: 156 APRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVGM 215

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESY 243
           AT IP HN++E+ E A   + +PEIS E+LLE     I GPDFPTG +I+  R  I ++Y
Sbjct: 216 ATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHR-GIEDAY 274

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   VEE+ +   C+VVT++PYQV   +L  KIA+L+   +I  + DI D
Sbjct: 275 RTGRGSIIMRAIVNVEEI-KNRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIAD 333

Query: 304 E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E S      ++    R     +++ +++  + ++T F  NM  L    VP+ +PLDG ++
Sbjct: 334 ETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDD-VPRTLPLDGFIR 392

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            W+ H+ EV+ RR++FR++  +  + +L+G L A   +DE+IA+IR     +  +  ++ 
Sbjct: 393 HWVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ 452

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AILN++LR L  LE  +I+ + D L    ++  ++L S  +Q   ++ E+
Sbjct: 453 LLDIDETQAQAILNMQLRRLAALERERIQQQHDELQELIDEYQAILASEVRQREIVSEEL 512

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IR 531
           + + + +        RRT   E+   D     + +I +E + V I+  G+         R
Sbjct: 513 QGIVDKYGDE-----RRT---EIVPFDGDMSMEDLIPEEDVVVTITRGGYAKRTRTDLYR 564

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEA 589
           S +     +     +  D ++      T   +L  +  G+ Y      L  G     G+ 
Sbjct: 565 SQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGSRDSKGQH 624

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+     + I        Y++   L++ +  G        +  +    G   + +  
Sbjct: 625 VANLLAFQPGEQIAQVLAIHDYEAADYLVLATRAGLVKKTRLRDYDSPRSGGLIAINLRE 684

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVIC 702
            +++     V   D + +V      + F+     +  M R   GV    ++ G     + 
Sbjct: 685 GDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPMGRSTSGVTGMKFRPGDTLLSMS 744

Query: 703 FKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               E  +           +        +  RGG G  V K   + G  + +
Sbjct: 745 RVPAETDVDVFVVFENGLAKRTPVSEYRVQGRGGYGIQVAKLSEKGGDLVGA 796



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 19/212 (8%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLST 568
            E     V+ +  G ++  +    D      L A++ +EGD L  A      D +LL+S 
Sbjct: 646 YEAADYLVLATRAGLVKKTRLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSR 705

Query: 569 DG---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSKGNA 623
            G   +     +     GR    +    +       +++      ++   + VV   G A
Sbjct: 706 KGMSVRFTATDSALRPMGRS--TSGVTGMKFRPGDTLLSMSRVPAETDVDVFVVFENGLA 763

Query: 624 FIVEESEIIANTRKG--KTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                SE     R G      K+S     +   + VTG D V VV E  K++   +D++ 
Sbjct: 764 KRTPVSEYRVQGRGGYGIQVAKLSEKGGDLVGALTVTGNDEVMVVMEKGKIVRSRVDEVR 823

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
             SR  +GVR  +  D G + V   +  E +T
Sbjct: 824 HTSRSTQGVRF-AAPDKGDAIVAVARNAESVT 854


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/792 (35%), Positives = 428/792 (54%), Gaps = 65/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+   +KK
Sbjct: 6   KEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L  GQGNFG+IDGDS AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF D Y+  ++EP V PSKFPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALID+PEISIE L+E++ GPDFPT GI +   E + E+YR GRG   +RA
Sbjct: 186 NLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGI-INGVEGVREAYRTGRGRVLIRA 244

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +  G    IVVTE+PYQV K+RL EKIAEL+  KRI  + ++RDES +D   ++
Sbjct: 245 RSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMRLV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++  ++M + M+  F +N+  L  G+ P+V+ L  +L+ +L HRREV+ 
Sbjct: 305 IELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQ-PKVLDLRQVLESFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420
           RR+ F ++    R  IL+GL IA  NID +I +IR   N  + K  +++R          
Sbjct: 364 RRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSDM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL  L  LE+ +I  E   LL 
Sbjct: 424 LDRAGASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELLD 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             E +  +L SG++   +I  E+  V E F        RR+   E+         + +I 
Sbjct: 484 LIEDLLDILGSGERLQQEIRNELLAVAEQFGDE-----RRS---EIRERQANLTLEDLIG 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++          +      +A  FKE D +   L A+T D +L  S+
Sbjct: 536 EEDVVVTLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSS 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y L    L   S    G+ I  L+ L  ++ I        YD    + +V+++G  
Sbjct: 596 RGRVYWLKVYELPQGSRASRGKPIVNLLPLEADERINAILPVREYDPDHYVFMVTARGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                ++       G   + +  ++ +  V    G   V +V    K + FS + +  M 
Sbjct: 656 KKTPLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPMG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR    +      +    + EG   + +    Y +        + +RGG G +  
Sbjct: 716 RTACGVRGVRMESDH-RVIALLNVAEGAALL-ATENGYGKRTRFDEFPVHRRGGQGVIGI 773

Query: 742 KGFPRSGKFLSS 753
           +   R+G  + +
Sbjct: 774 QTEGRNGPLVGA 785



 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 72/206 (34%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     + +    +++ RG ++        +  S  + A+  ++ D L   
Sbjct: 626 EADERINAILPVREYDPDHYVFMVTARGTVKKTPLTDFSRRRSTGIIAVDLRDDDYLVDV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   ++L++T GKA      ++         ++  + +  +  ++          L
Sbjct: 686 SLTDGQMDVMLVTTAGKAVRFSENDVRPMGRTACGVRG-VRMESDHRVIALLNVAEGAAL 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G        E   + R G+  + +     +   +     +  D   ++     L
Sbjct: 745 L-ATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGPLVGAARVLEDDEAMLITTGGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   +DQIP + R  +GVRL    +G
Sbjct: 804 VRTPVDQIPLIGRNTQGVRLIRLDEG 829


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 402/758 (53%), Gaps = 32/758 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +   +L YA+S I +RA+PD+RDG KPVHRRI++ M E+G+     F+KS
Sbjct: 9   RVTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITPDKPFRKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 69  ARMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +++D +DF+D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP HN
Sbjct: 129 LSKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L+ NP+ S+  L+E + GPDFPTGGI++  + +I  +Y  G+G   +RA+
Sbjct: 189 LTEVISALHILMKNPDASLADLMEALPGPDFPTGGIVM-GKAAIRRAYETGKGTITLRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IV TEIPY V K++LIE+IAEL   KRI  + D+ DE+      ++  
Sbjct: 248 VDIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTGMRIVID 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ M+T F +NM  +  G  P+V+ L  IL+ +L  + EV+ RR
Sbjct: 308 VRRDASAEVILNNLYKMTLMQTSFGINMLAIVNGA-PKVLGLKAILQYYLEFQLEVIRRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEII IIR     D  K  +++RFSL++ Q  AIL
Sbjct: 367 TEFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITRFSLSDKQSQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E  +++A  +    +L S ++Q   I  E+ E++  F      
Sbjct: 427 DMRLVRLTGLEREKVEKEYADVMANIKDYKEILASKERQQAIIYEELLEIQNKFGD---- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +I +E + V +++ G+I+                +  + 
Sbjct: 483 -DRRTELMVGEV--LSLEDEDLIAEEDVVVSLTHNGYIKRLPTSEFKAQNRGGKGVQGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  GK Y +    +        G  +  L+ +N+N+ +
Sbjct: 540 VHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAKGIPVINLLGINNNEHV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      +    L   + +G        E       G   + +  ++++  V  + 
Sbjct: 600 QAVINVANPGENDNRDLFFTTVQGTVKRTPVDEFANIRSNGLKAINLKEDDELIDVDIIN 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDS 714
            D   ++G +    + F+   +  M R   GVR    ++   +      K    +  I  
Sbjct: 660 ADANMIIGTHLGYAVSFAATDVRSMGRSATGVRGIRLREHDYVIGASVLKPDSKVFVI-- 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + Y +        +  RGG G        ++G    
Sbjct: 718 SEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKNGPLAG 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++              L A++ KE D L      +    +++ +  G A + 
Sbjct: 617 FFTTVQGTVKRTPVDEFANIRSNGLKAINLKEDDELIDVDIINADANMIIGTHLGYAVSF 676

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A ++ S       ++  I L  +  ++ A V     K+ V+S KG       +E     
Sbjct: 677 AATDVRSMGRSATGVRG-IRLREHDYVIGASVLKPDSKVFVISEKGYGKQTAAAEYPIKG 735

Query: 636 RKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK    V+       +  +  + GD  + +V     ++ FS   + E  R   GV L 
Sbjct: 736 RGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLVTNKGVMIRFSASDVSETGRATLGVHLI 795

Query: 691 SYKDGGISDVICFKICEGLT 710
              D      +     E  T
Sbjct: 796 RLADDTAVATMAKVAKEDET 815



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 10/165 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   +I  +   ++ ++ G+        +RS+   +  +  +  +E D +  A   
Sbjct: 649 DDELIDVDIINADANMIIGTHLGYAVSFAATDVRSMGRSATGVRGIRLREHDYVIGASVL 708

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
               ++ ++S  G      A         G+ I+ +     N  +      D    +++V
Sbjct: 709 KPDSKVFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLV 768

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           ++KG       S++    R   G   ++++ +  +  + KV  + 
Sbjct: 769 TNKGVMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKED 813


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/823 (31%), Positives = 402/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/798 (32%), Positives = 420/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI+ PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+  K+    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRIKYLISILSDIKELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/765 (30%), Positives = 397/765 (51%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +  +   L+  ++  Y+ YA+S I  RA+PD+RDG KPVH R++++M +       ++ K
Sbjct: 14  DRTEPRDLQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSMFDSRFLPERSYNK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTE 
Sbjct: 74  CARVVGDVMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQGNDPAAAMRYTEC 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L  ++ED VDFRD Y+    EP V PS+ PNLL NG+SGIAVGMAT+IP H
Sbjct: 134 RLTPLAMRMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSSGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E  +  +DNPE S E+ LE     I GPDFPT G I+   + I ++YR GRG  
Sbjct: 194 NLREVAEGVVWALDNPEASDEETLEAMIARIKGPDFPTYGQIL-GTQGIEDAYRTGRGSV 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309
           ++RA   ++E  +G   +VV+E+PYQV    L+E IA L+  ++I  + +I DES     
Sbjct: 253 KMRAVVEMDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGISNIADESNRRSG 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++  + ++  F +NM  L  G VP+ + LD +++ ++ H+ 
Sbjct: 313 MRIVVTVKRDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDG-VPRTLRLDQMIRHYVKHQI 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ FR++  + R  + +GL+ A   +D +IA+IR  D     +  ++   S+ E 
Sbjct: 372 EVIVRRTKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARSGLMELLSVDEV 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  +L  +  +   +  +L   ++Q   +  E+ E+ +  
Sbjct: 432 QSNAILEMQLRRLAALERQKIIDQLAEIELQIADLKDILAKPERQRAIVRGELLEIVDKH 491

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT        D     + +I  E + V I+  G+         R+ K    
Sbjct: 492 GD-----DRRTKIV---PFDGDVSMEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGK 543

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y   A +L   S    G+ +  L+  
Sbjct: 544 GVQGAQLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYDLPEASRNARGQHVANLLAF 603

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             +++I        Y++   L++ +  G     + S+  +N   G   + +  E+++   
Sbjct: 604 QPDEEIAQVIQIKNYEAAPYLVLATRNGLVKKSKLSDFDSNRSGGLIGINLREEDELVGA 663

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICF-KICEG 708
           V    GD + +V ++ + + F      +  M R   GV+   +      +++    + EG
Sbjct: 664 VLTGEGDDLLLVSKDGQSIRFHSSDDVLRPMGRATSGVQGMRFNSD--DELLSMGVVQEG 721

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           L  + +    Y +        +  RGG G L  +   R G+ + +
Sbjct: 722 LFVLVATDGGYAKRTPIEDYPVQGRGGKGVLTIQHDRRRGRLVGA 766



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 12/228 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +       ++ +E D L  A
Sbjct: 604 QPDEEIAQVIQIKNYEAAPYLVLATRNGLVKKSKLSDFDSNRSGGLIGINLREEDELVGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTL-PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           +     D +LL+S DG++     + ++L   G   +    +  N + ++++  V      
Sbjct: 664 VLTGEGDDLLLVSKDGQSIRFHSSDDVLRPMGRATSGVQGMRFNSDDELLSMGVVQEGLF 723

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVT-GDHVAVVGENRK 669
           +LV +  G A      +     R GK  L +  +    ++   + V   D +  +     
Sbjct: 724 VLVATDGGYAKRTPIEDYPVQGRGGKGVLTIQHDRRRGRLVGALIVDVEDELYAITSAGG 783

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           ++  S  +I +  R  KGVRL +  +      +     E         
Sbjct: 784 VIRTSAKEIRKAGRQTKGVRLMNLGEKSTLIAVARNADEPADVSTGEE 831


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 442/753 (58%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P+ S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSAVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLMAILTEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + +R ++R+  + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F ++E 
Sbjct: 357 FRRDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L  E++++ +LL S ++    I  EI+      
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQEELAKERDQLQALLASERKLNTLIKKEIQ------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R +        KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 471 ADALAYGDERRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   S+++A  R GK  + +    K    +++ G  D +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIHGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +PE+S+GKG ++ S         + G++ +      +    +    R
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDGLAWLFVLP-PQTSVTLYFGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  GS +P+G  +  + 
Sbjct: 710 KLILRPEDLQKFRAERGRKGSPLPRGLQKIDRV 742


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/822 (31%), Positives = 414/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+  V + +        RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDG-----RRTEIIESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+ N+ +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSNLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 39/243 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++ +            L A+   E D+L   
Sbjct: 629 DANETVTAILPLNEFPENHYVFMATASGTVKRVDLEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDES 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CFK 704
             +
Sbjct: 869 SIE 871


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/839 (31%), Positives = 421/839 (50%), Gaps = 112/839 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL+DN E+++++L++YI GPDFPT GI +  R  I+E+YR GRG   VRA
Sbjct: 186 NLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYVRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + M++ F +N+  L  G+ P+ M L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I++   P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           A   ++  +L + ++    I  E+ +VK  F  +     RRT   E+  + +      +I
Sbjct: 484 ALIGELIRILTNPERLMEVIREELEKVKAEFGDA-----RRT---EIIASRQDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEERVVTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDD 655

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 656 EGVVIEGEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSA 715

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K+L F+  ++  M R  +GVR      G
Sbjct: 716 GLIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMGRTARGVRGMRL--G 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+GK + +
Sbjct: 774 KDQQLISMLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGA 832



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 89/258 (34%), Gaps = 23/258 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----------AM 514
           L+ G++    +  ++  +++      DL          +       +             
Sbjct: 626 LDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIEGEATEVVEAEEVEEVEGETPELVA 685

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                   + +  G ++        +  S  L AL  +EGD+L  A        ++L S 
Sbjct: 686 EPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLEEGDTLIAAAITDGAKEVMLFSD 745

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK        + +       ++ +  L  +Q +++  + +S  ++L  S +G       
Sbjct: 746 AGKVLRFAESKVRTMGRTARGVRGM-RLGKDQQLISMLIPESGAQILTASERGFGKRTGL 804

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +     R G+  + +     + + +  +    G+ + ++ +   L+   +D++    R 
Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSSSGRN 864

Query: 684 GKGVRLQSY-KDGGISDV 700
            +GV L    KD  +  +
Sbjct: 865 TQGVTLIKLAKDETLVGL 882


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/823 (32%), Positives = 416/823 (50%), Gaps = 89/823 (10%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
              + +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  + 
Sbjct: 12  QDTMHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYN 71

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG+IDGD+AAA 
Sbjct: 72  KPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAM 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT
Sbjct: 132 RYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LA I+N EISI++L+ YI GPDFPT  + +  R+ I E+Y+ GRG 
Sbjct: 192 NIPPHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAAL-INGRKGIEEAYKTGRGK 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  VE   +G   IVV EIPYQV K++LIEKIA+L+  K++  +  I D S +D 
Sbjct: 251 IYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITDLSDKDG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R    ++++ +++ L+ ++  F +N+  L     P+++ L  +++ ++ HRR
Sbjct: 311 MRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVAL-DKGQPKLLNLKQLIEAFVLHRR 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ + ++    R  IL+GL IA  N+D II +IRN   P+               
Sbjct: 370 EVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQAWELGH 429

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + LTE Q  AIL+LRL+ L  L   +I  E  
Sbjct: 430 VSQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYK 489

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL    ++  +L S ++    I  E+ +++E F+       RRT   E++ +      +
Sbjct: 490 KLLDVIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSADINLE 541

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D IL
Sbjct: 542 DLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTIL 601

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ Y L    L   S    G  I  ++ L+ N+ I        Y+    +++ ++
Sbjct: 602 CFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYEEDKFVVMATA 661

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G    +  +E       G   L +  E+++  V    G + + +     +++ FS + +
Sbjct: 662 GGIVKKIALTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENAV 721

Query: 679 PEMSRGK-GVRLQSYK--------------------------DGGISDVICFKICEGL-T 710
             M R   GVR                               D  I  V+   I +    
Sbjct: 722 RAMGRAATGVRGIKLALTNDLSDDESAVDMEEISDENTNDALDLNIDKVVSLVIPKNEGA 781

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +           R   G +  K   R+GK +++
Sbjct: 782 ILTATQNGYGKRTELAEYPTKSRNTKGVISIKVSERNGKVVAA 824



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 38/229 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A L     E++   V+ +  G ++ +      +  S  + AL+ ++ D L   
Sbjct: 636 DENERITAILPVTAYEEDKFVVMATAGGIVKKIALTEFSRPRSTGIIALNLRDEDELIGV 695

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS-GRG----HGEAIQLLIDLNHNQ--------- 600
                 + I+L S  G+        + + GR      G  + L  DL+ ++         
Sbjct: 696 DITDGQNEIMLFSAQGRVVRFSENAVRAMGRAATGVRGIKLALTNDLSDDESAVDMEEIS 755

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  +  +   +L  +  G     E +E    +R  K  + +   
Sbjct: 756 DENTNDALDLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKVS 815

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           E+   VV  T     D + ++ +   L+   +++I  + R  +GVRL  
Sbjct: 816 ERNGKVVAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIR 864


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 407/766 (53%), Gaps = 36/766 (4%)

Query: 12  LVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +VEE+ +     +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 1   MVEEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPD 60

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA 
Sbjct: 61  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAM 120

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +++ ++++ VDF   Y+ E+ EP V PS+FPNLL NG +GIAVGM T
Sbjct: 121 RYTEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTT 180

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A   L+ NP+ + + L+E + GPDFPT GI++  +  I ++Y  G+G 
Sbjct: 181 NIPPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVI-GKAGIKKAYETGKGR 239

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRAR  ++ +  G   I+V+EIPY V K++L+E+IA+L   KRI  +  +RDE+    
Sbjct: 240 IIVRARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +     +++ ++F  + M+T F  NM  +    VP+ + L  IL+ +L H+ 
Sbjct: 300 MRIVIECRKDASASVILNNLFKQTQMQTNFNFNMVAI-DQGVPKTLSLKQILRRYLDHQE 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           E++ RRS F  +  + R  IL+GL IA  +IDEI+ I+R+    D+ K + + ++ L++ 
Sbjct: 359 EIIRRRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYGLSDK 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I +E  +L+AE   ++ +L S ++++  I  E+ E+++ F
Sbjct: 419 QAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G  R T   V         + +IE+  + + +S +G+I+               
Sbjct: 479 ------GDERRTEIRVGEI-TNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +  ++GD +   L   T D IL  +  G+ + +    +        G  I  L++L
Sbjct: 532 GVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLNL 591

Query: 597 NHNQDIVTAFVY-------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             ++ +             DS      V+ +G        E       G   + +  +++
Sbjct: 592 QEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDDE 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC 706
           +  V++ +G D++ +       + F+ D +  M R   GVR      D  +         
Sbjct: 652 LVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSMGRTATGVRGIRLDQDDYVVGASILGPD 711

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +  +    + Y +        +  RGG G        ++G  + 
Sbjct: 712 QDVLIVT--EKGYGKRTPADEYSIKHRGGKGVKTVNITEKNGPLVG 755



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +V      T      + E     ++ +G ++              L A++ ++ D L   
Sbjct: 596 QVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDDELVAV 655

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L     D I+L S  G A +    ++ S       ++  I L+ +  +V A +      +
Sbjct: 656 LQTSGEDNIILGSHQGYAVSFAEDDVRSMGRTATGVRG-IRLDQDDYVVGASILGPDQDV 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L+V+ KG        E     R GK    V     +   + L      + + ++ +   +
Sbjct: 715 LIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKNGPLVGLATVDLDEDIMLMTDEGVV 774

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + F    I +  R   GVRL    +  
Sbjct: 775 IRFHSVDISQTGRATQGVRLMRLDEAA 801


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
             + ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITNGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENK 817



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 398/762 (52%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   ++++ VDF   ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEIS-----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+         IE++LE + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P++++  ++  + ++  F + M  L   + P+VM L  +L+ +L H+ 
Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQ-PKVMNLLEMLQYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +     R  IL+GLLIA  NIDE+I IIR      + K  ++ RF L++ 
Sbjct: 365 DVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKRFGLSDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E   L+ + E+  ++L   K     I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAILADKKLLLGVIKKEILVIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I +E + + ++  G+I+               
Sbjct: 485 GD-----DRRTKIG---FDEFDISMEDLIPRENVVITMTKLGYIKRMSMDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      +   I+  +  G+ Y L A  +        G AI  L+ L
Sbjct: 537 GIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L + + KG        +     + G   + +  ++K+  V
Sbjct: 597 MPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQDYANVRKTGLAAIVLREDDKLIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                 + + +V +    + F+   +    R   GVR  +  D  +  VI  +I  +G  
Sbjct: 657 KITDNTEDIFLVTKYGMCIRFNETDVRSTGRVSMGVRGMNLTDNDV--VIGMQIESQGKD 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + R   +  +        RGG G    K   ++G  + 
Sbjct: 715 MLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITEKTGNVVG 756



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +     E+     + + +G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYEEGKYLFMATEKGLVKKTPIQD 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L        T+ I L++  G        ++ S       ++
Sbjct: 634 YANVRKTGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRSTGRVSMGVR 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + +L  N  ++   +      +L+VS +G     +  E     R GK        EK  
Sbjct: 694 GM-NLTDNDVVIGMQIESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITEKTG 752

Query: 652 LVV---KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            VV    V  D  + ++     ++      I    R   GV+L + K+      + 
Sbjct: 753 NVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVA 808



 Score = 44.7 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS    S+ +  ++  + D +           +L++S  G                G+ 
Sbjct: 682 VRSTGRVSMGVRGMNLTDNDVVIGMQIESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           ++         ++V     D   ++++++++G    ++ S+I    R   G   + +   
Sbjct: 742 VKCYKITEKTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEN 801

Query: 648 EKMKLVVKV 656
           + +  V KV
Sbjct: 802 DTVASVAKV 810


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 397/760 (52%), Gaps = 34/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 7   RIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN
Sbjct: 127 MSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+
Sbjct: 187 LGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V   
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  +ID II IIR     D  K  +++ + L++ Q  AIL
Sbjct: 365 TEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++E    +A     + +L   ++    I  E+ E++E F      
Sbjct: 425 DMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 482 --RRTELMVGEV--LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMG 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++  L   T D +L  +  GK Y + A  +        G  +  L+D++ ++ I
Sbjct: 538 VHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISADEKI 597

Query: 603 VTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            T     +          L  ++ +G       SE     + G   + +   +++  V+ 
Sbjct: 598 QTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLA 657

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI- 712
                  ++G +    + F    I  M R   GVR    +D     VI   I E  + + 
Sbjct: 658 TDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDY--VIGSAILEPESKVF 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        +  RGG G        ++G    
Sbjct: 716 VISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 12/207 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566
              +KE     I+ +G ++              L A+  ++GD L   L    +  I++ 
Sbjct: 608 VQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLATDDSKNIIIG 667

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A +    ++ S       ++  I L  N  ++ + + +   K+ V+S  G     
Sbjct: 668 THQGYAVSFDEKDIRSMGRSAAGVRG-IRLRDNDYVIGSAILEPESKVFVISENGYGKQT 726

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             SE     R GK     +  EK   +  +  V GD  + V+ +   ++ F I  + E  
Sbjct: 727 AASEYPIKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKISDVSETG 786

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GVRL +     I   +     E 
Sbjct: 787 RATLGVRLINLGADSIVSTMTKVEPED 813


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/817 (31%), Positives = 413/817 (50%), Gaps = 89/817 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +  A+ KS
Sbjct: 7   NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP HN
Sbjct: 127 MQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA +DN EISI++L++YI GPDFPT  + +  R+ I E+Y+ GRG   VRA+
Sbjct: 187 LNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAAL-INGRKGIEEAYKTGRGKIYVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   +G   IVVTEIPYQV K++L+EKIAEL+  K+I  + ++RD S ++   V   
Sbjct: 246 AEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ M+  F +NM  L     P+++ L  I++ ++ HRREV+ RR
Sbjct: 306 VKRDAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKLLNLKQIIEAFVRHRREVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL IA  NID +I +IR                           
Sbjct: 365 TVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLS 424

Query: 418 -------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ L++ Q  AIL+LRL+ L  LE  +I +E   +L E 
Sbjct: 425 ATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K+  +LNS  +    +  E+ +VKE F  +     RRT   E++ A      + +I +E
Sbjct: 485 GKLLHILNSADRLKEVLCEELEKVKEEFGDA-----RRT---EITSASGDINLEDLITQE 536

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  S+ G
Sbjct: 537 DVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRG 596

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y L    L        G  I  ++ L  N+ I        Y+    +++ ++ G    
Sbjct: 597 RLYWLKVYQLPQANRGARGRPIVNILPLQENERITAILPVAAYEEDKFIVMATAGGLVKK 656

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
           +  +E       G   L +  E+++  V    G + + +     +++ F  + +  M R 
Sbjct: 657 IALTEFSRPRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENAVRAMGRL 716

Query: 684 GKGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSAG 716
             GVR                               D  +  V+   I +     + +  
Sbjct: 717 ATGVRGIKLALTNDISDDESAVEIEDISDEDTKEPLDLNVDKVVSLVIPKNDGAILTATQ 776

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           R   G +  K   R+GK +++
Sbjct: 777 NGYGKRTALSEYPTKSRNTKGVISIKVSDRNGKVVAA 813



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 38/229 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A L  A  E++   V+ +  G ++ +      +  S  + AL+ ++ D L   
Sbjct: 625 QENERITAILPVAAYEEDKFIVMATAGGLVKKIALTEFSRPRSSGIIALNLRDEDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN-------- 599
                T+ I+L S+ G+            G L +G RG   A+   I  + +        
Sbjct: 685 DITDGTNEIMLFSSQGRVVRFEENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDIS 744

Query: 600 ------------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  +  +   +L  +  G       SE    +R  K  + +   
Sbjct: 745 DEDTKEPLDLNVDKVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVS 804

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           ++   VV  T     D + ++ +   L+   + +I  + R  +GVRL  
Sbjct: 805 DRNGKVVAATQVEENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIR 853


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 448/750 (59%), Gaps = 20/750 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A + L+D P+ S++ L+E++ GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEDGN-----VVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV++SRF L+E 
Sbjct: 357 FRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPVLMSRFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++K+ ++L+S ++    +  EI       
Sbjct: 417 QTEAILELKLRHLAKLEEVKIRGEQSELAKERDKLQAILSSERKLNTLLKKEI------M 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R +        KA  +  +   EP+T+V+S  GW+RS K H +D + L++K
Sbjct: 471 ADAATYGDERRSPMRERDEAKAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + +     +    
Sbjct: 531 AGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTVPAGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAV 663
           +     + L+VS  G  FI   S+++A  R GK  + +    ++   +++     D +  
Sbjct: 591 MAPDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI---CEGLTWIDSAGRSYN 720
           +    ++L+F +  +P++S+GKG ++ S +    +D++ + +    +    +    R   
Sbjct: 651 ITRAGRMLMFPVADLPQLSKGKGNKIISVQSAAENDLLSWLLILPPQSSITLYFGKRKLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               DL  + G+RG  G+ +P+G  R  + 
Sbjct: 711 LRPEDLQKFRGERGRKGTSLPRGLQRIERV 740


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
 gi|332310340|gb|EGJ23435.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A]
          Length = 842

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/758 (32%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYHYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G  ++ +  ++ + + F  + I  M R   GVR    ++    +VI  ++ E     +  
Sbjct: 657 GSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 652 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 645 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/805 (30%), Positives = 401/805 (49%), Gaps = 81/805 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKSA
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM
Sbjct: 84  RVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN+
Sbjct: 144 DRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNM 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LID+P+ ++  L+++I GPDFPT    +  RE I  +Y  GRG   +RAR 
Sbjct: 204 GEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAA-TITGREGIARAYETGRGQITIRART 262

Query: 257 CVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E   +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +   
Sbjct: 263 EIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIE 322

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +++ ++F ++ +ET F   M  +  G  P+ + L  +L  +++HRR+V+ RR
Sbjct: 323 LKRDAISGVVLNNLFSMTPLETTFGAVMLAI-DGGQPRTLNLKELLDRFISHRRDVITRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R+ I++GLL+A   ID ++++IR    P                      
Sbjct: 382 TRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFG 441

Query: 418 ----------------------------------VSRFSLTENQVDAILNLRLRSLRKLE 443
                                                   +E Q   IL +RL+ L  L+
Sbjct: 442 NLPRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQ 501

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  EL  L+ +  ++  +L       N I  E+++++  +        RRT   E++
Sbjct: 502 REELFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGDK-----RRT---EIT 553

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                   + +I +E + V +S+ G+++          K      +    KE D +    
Sbjct: 554 GEVSEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLF 613

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A T   ++ ++T GK Y+L    +   S    G+AI  L+    ++ +    V   +  
Sbjct: 614 VASTHAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPE 673

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
              +  V+ KG     + S        G   L +   +++  V    G   V +      
Sbjct: 674 NRFVFFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLSTAQGM 733

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLL 727
            + F  +++  M R   GV+  +  DG   +V+   + E   T +      Y +   +  
Sbjct: 734 SIRFPEEEVRSMGRQAYGVKGITLVDG--DEVVGADVVEKDATILTVTENGYGKRTQEAE 791

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G +  K   R+GK + 
Sbjct: 792 YRVQGRGGKGIIDIKTTERNGKVVG 816



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 12/219 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        L      +      ++ +G ++     +        + AL  +EGD L   
Sbjct: 657 EEDEKLAQVLVTRDFPENRFVFFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAV 716

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  +LL +  G +   P   + S       ++  I L    ++V A V +    +
Sbjct: 717 KITDGSKDVLLSTAQGMSIRFPEEEVRSMGRQAYGVKG-ITLVDGDEVVGADVVEKDATI 775

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L V+  G     +E+E     R GK  + + + E+    + LV     D V +V     L
Sbjct: 776 LTVTENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADEVLLVTNGGML 835

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           +     +I  + R  +GVRL + ++G        K+ E 
Sbjct: 836 IRMKAREISVIGRNTQGVRLIALENGTEKVTGISKLPES 874


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 416/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V G + + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGNEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGNEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/757 (37%), Positives = 443/757 (58%), Gaps = 27/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + VSLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   AE++L  + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+D PE ++++L E+I GPDFPT   I+  R+ I + Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW  E     S  IVVT++P+QV  +R++E+IA  +  K++P++ D+RDE
Sbjct: 240 TGRGSLRMRARWIRE-----SGEIVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+NV+     P V  L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 355 EWLTFRRTTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKAELMARFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q +AIL L+LR L KLEE +I+ E D L AE++++ S+L S  +    I  E++  
Sbjct: 415 LSADQAEAILELKLRHLAKLEEMKIRGEQDELAAERDELQSILGSEDRLRELIKSEMQAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E     KA  +  +I  +P+TVV+S +GW+R+ K H ++   
Sbjct: 475 AETFGD-----DRRSPIVEREE-AKAFSEVDLISNDPVTVVLSEKGWVRAAKGHDIEPEG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A       + + L + G+AY+L A +  S RG GE +   I+       
Sbjct: 529 LSYKAGDRFSLAARGRNNQQTIFLDSTGRAYSLMAHSFPSARGQGEPLTGRINPPSGASF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D + K L+V+  G  F+   +++I+  R GK  + V    ++   + +      
Sbjct: 589 SGLLMGDPSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKT 648

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
             +  V    ++L+F + ++PE+++GKG ++ S        ++  +  V  F   + L  
Sbjct: 649 LYLGAVSNEGRMLVFPLSELPELAKGKGNKIISIPSARVQSREEYVVAVAVFAEDDQLE- 707

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           I +  R      +DL  +LG+RG  G  +P+G  R  
Sbjct: 708 IRAGKRKMGLQFSDLEHYLGERGRRGHKLPRGLQRVD 744


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 397/761 (52%), Gaps = 35/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+G       +K
Sbjct: 7   DQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +++ + ++ VDF   ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+  A + LIDN     E +I++L++ + GPDFPTGGII+     I E+YR GRG  
Sbjct: 187 NLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIIL-GTSGIKEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL   K+I  + D+RDE++ +  
Sbjct: 246 RVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R ++P +++  +F  + ++  F +    L  G  P+V+ L  +L  +L H+++
Sbjct: 306 RIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGE-PKVLNLYDLLNYYLIHQKD 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +   + R  I++GL+IA  NIDE+I+IIR+       K  ++ RF LT+ Q
Sbjct: 365 VVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDEQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  ++++E   L+A+  ++ ++L   K+    I  EI  + + + 
Sbjct: 425 SQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEKKLLGVIREEIIAIADKYG 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                        E+   +     + +I +    + ++  G+I+                
Sbjct: 485 DDRK--------TEIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGKG 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   E D +   L   +   ++  +  G+ Y + A  +   S    G AI  LI L 
Sbjct: 537 IKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPLQ 596

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        Y+    L + +  G        +     + G   + +  ++K+  V 
Sbjct: 597 PDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKDYENIRKNGLAAINLREDDKLIEVK 656

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE-GLTW 711
                + + +  +  + + F    +    R   GV   +     +  +I  +    G   
Sbjct: 657 VTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVIGMNLAPNDV--IIAMQTASMGEAV 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +     +           RGG G    K   +SG  + 
Sbjct: 715 LLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSGNLVG 755



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 18/245 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      A +     E +    + +  G ++      
Sbjct: 573 KAYEIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYEDDKYLFMATRNGIVKKTPIKD 632

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A++ +E D L        ++ ILL +  G+       ++ S       + 
Sbjct: 633 YENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRSTGRTTMGVI 692

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
            + +L  N  I+          +L+VSS G        E     R GK      +   S 
Sbjct: 693 GM-NLAPNDVIIAMQTASMGEAVLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITEKSG 751

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
             + +      D + ++     ++   +  +  + R   GV+L + K+G     I   + 
Sbjct: 752 NLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVE 811

Query: 707 EGLTW 711
           +    
Sbjct: 812 DKTLM 816


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 396/760 (52%), Gaps = 34/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 7   RIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 67  ARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +++D +DF+  Y+  + EPVV P++FPNLL NG +GIAVGM T+IP HN
Sbjct: 127 MSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+      L+ NP+++   L+E I GPDFPTG I++  +  I ++Y  G+G   +RA+
Sbjct: 187 LGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E   G   IVV E+PY V K+RLIE+IAEL   K+I  + D++DES  +   V   
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  +ID II IIR     D  K  +++ + L++ Q  AIL
Sbjct: 365 TEFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  ++++E    +      + +L   ++    I  E+ E++E F      
Sbjct: 425 DMRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPERIDKIIYEELLEIQEKFGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 482 --RRTELMVGEV--LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMG 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++  L   T D +L  +  GK Y + A  +        G  +  L+D++ ++ I
Sbjct: 538 VHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAKGIPVINLLDISADEKI 597

Query: 603 VTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            T     +          L  ++ +G       SE     + G   + +   +++  V+ 
Sbjct: 598 QTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLA 657

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI- 712
                  ++G +    + F    I  M R   GVR    +D     VI   I E  + + 
Sbjct: 658 TDDSKNIIIGTHQGYAVSFDEKDIRSMGRSAAGVRGIRLRDNDY--VIGSAILEPESKVF 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   Y +        +  RGG G        ++G    
Sbjct: 716 VISENGYGKQTAASEYPIKGRGGKGIKTTNITEKNGPLAG 755



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 12/207 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566
              +KE     I+ +G ++              L A+  ++GD L   L    +  I++ 
Sbjct: 608 VQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGLKAITLRDGDELINVLATDDSKNIIIG 667

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A +    ++ S       ++  I L  N  ++ + + +   K+ V+S  G     
Sbjct: 668 THQGYAVSFDEKDIRSMGRSAAGVRG-IRLRDNDYVIGSAILEPESKVFVISENGYGKQT 726

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
             SE     R GK     +  EK   +  +  V GD  + V+ +   ++ F+I  + E  
Sbjct: 727 AASEYPIKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFNISDVSETG 786

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GVRL +     I   +     E 
Sbjct: 787 RATLGVRLINLGADSIVSTMTKVEPED 813


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/762 (32%), Positives = 394/762 (51%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP+V P+++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++EI  A + +IDN     E +IE+LLE + GPDFPTG +I+ +R  I E+YR GRG  
Sbjct: 187 NMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTR-GIEEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + ++RDES  +  
Sbjct: 246 RVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESDREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R ++ ++++  ++  + ++  F + M  L   + P+V+ L  +L  +L H+ E
Sbjct: 306 RICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQ-PKVLTLLEMLSYYLKHQEE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR ++ +     R  IL+GLL A   IDE+I IIR        K  ++ RF   + Q
Sbjct: 365 VVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIERFEFDDIQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  +++ E   L     + +++L   K     I  EI+ + + F 
Sbjct: 425 AQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAILADEKLLLGVIKGEIQVINDKFG 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT+       +     + +I  E   + ++  G+I+                
Sbjct: 485 DE-----RRTSIG---FDEFDISMEDLIPDENTVIAMTRLGYIKRMTIDNFKSQHRGGKG 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++      T   I+  +  G+ Y L A  +   S    G AI  L+ L 
Sbjct: 537 IKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAYEIPESSRTARGTAIVNLLQLL 596

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I        Y     L + +  G     +  E     + G   + +  ++++  V 
Sbjct: 597 PEERITAIIALKEYKDNRYLFMATKDGIVKKTKIKEYQNIRKTGLQAINLREDDELIEVK 656

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTW 711
                  + +V +N   + F    +    R   GV   +  +G   +V+  +I  +G   
Sbjct: 657 TTNSQKDIVLVTKNGMCIRFHEKDVRNTGRASMGVIGMNLTNG--DEVVAMQIHTQGKYL 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +  +       +RGG G    K   ++G  + +
Sbjct: 715 LTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITEKTGNVVGA 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 22/240 (9%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               A +     +      + +  G ++  K   
Sbjct: 573 KAYEIPESSRTARGTAIVNLLQLLPEERITAIIALKEYKDNRYLFMATKDGIVKKTKIKE 632

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A++ +E D L      ++   I+L++ +G        ++   R  G A  
Sbjct: 633 YQNIRKTGLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDV---RNTGRASM 689

Query: 592 LLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +I  +L +  ++V   ++     LL VS  G   + +  E     R GK        EK
Sbjct: 690 GVIGMNLTNGDEVVAMQIHTQGKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITEK 749

Query: 650 MKLVV---KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
              VV    V  +H V ++     ++   ++ I  + R   GV+L +   G    V    
Sbjct: 750 TGNVVGAKAVNEEHEVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLA 809


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/837 (31%), Positives = 420/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS ++    I  E+  ++  +  +     RRT   E+  A        MI
Sbjct: 484 EQIGELIRILNSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELED 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 ADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QQIISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 92/250 (36%), Gaps = 20/250 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L  G++    +  ++  +++      +L     T  E    +   + +   +        
Sbjct: 626 LEEGERITAMLQVDLEALQQNADLDEELEDADDTVLEGELVEAEEVDEEDGDTPEWVAEP 685

Query: 522 -----VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +     +   ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRNARGVRGM-KLGKGQQIISMLIPESGAQILTASERGFGKRTPLSK 804

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G+  + + ++ +   +   ++V  G+ + ++ +   L+   + ++  +SR  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLIGAIQVHEGEEIMLISDQGTLVRTRVGEVSSLSRNTQ 864

Query: 686 GVRLQSYKDG 695
           GV L      
Sbjct: 865 GVTLIKLAAD 874


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/824 (32%), Positives = 417/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   +  ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G
Sbjct: 1   MTDS---IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +  G  + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  ITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+VTE+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVAL-DHGQPRLFNLKQIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------- 418
            HRREV+ RRS F ++    R  IL+GL +A  NIDEII IIR   + K           
Sbjct: 356 MHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISRPW 415

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                      S + L+  QVDAIL LRL  L  L   ++ +E 
Sbjct: 416 KLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  ++NS ++    I  E+ +V+  F+       RRT   E++ A      
Sbjct: 476 KELLVKIAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDKFVIMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+   
Sbjct: 648 AGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +   
Sbjct: 708 VRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSDDNAEETLDLNIDKVVSLVVPKNDG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 76/514 (14%), Positives = 171/514 (33%), Gaps = 83/514 (16%)

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDESAEDVRIVLF 314
            +E        +V+    ++++K+R    I E   +    I  + DI  +S E       
Sbjct: 350 IIEAFVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEK 409

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI--LKEWLAHRR--- 369
             +R   P  L   I  L D   R         +      +  + +  + E   HR    
Sbjct: 410 LISR---PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGL 466

Query: 370 --EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII--RNEDKPKPVMVSRFSLTE 425
             E +       +  I   + I+         I E +  +  +  D+ +  + +     +
Sbjct: 467 ATEEVINEYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDID 526

Query: 426 -----NQVDAILNL------RLRSLRKLEEYQIKSELDNLLAEKEK--IDSLL------- 465
                 Q D ++ L      + + L   E  +   +  +    K++  I+ LL       
Sbjct: 527 LEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDT 586

Query: 466 ----NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEP 519
               +S  + +      ++  +   +     GR       +   ++  A L  +  E++ 
Sbjct: 587 ILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEEDK 641

Query: 520 ITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             ++ +  G ++ +      +  S  + AL+ ++ D L        ++ I+L S+ G+  
Sbjct: 642 FVIMATAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVV 701

Query: 574 T-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------------------DIVTAF 606
                 + A   L+    G  + L  D+  ++                       +V+  
Sbjct: 702 RFAESAVRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSDDNAEETLDLNIDKVVSLV 761

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVA 662
           V  +   +L  +  G     + SE    +R  K  + +   E+   VV  T     D + 
Sbjct: 762 VPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAATQVEETDQIM 821

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           ++ +   L+   + ++  + R  +GVRL    + 
Sbjct: 822 LITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAED 855


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 409/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHXAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVT  PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEALLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 186/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATSISSRSWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
             + ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITNGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 416/837 (49%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LAL+DNP++++++L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VEE+ +  G   I++TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I++   P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ SE   +L
Sbjct: 424 MVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++  +L +  +    I  E+  VK  F  +     RRT   E+  +        +I
Sbjct: 484 NLIGELIRILTNPARLMEVIREELEAVKAEFGDA-----RRT---EIVASQVDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 AEGAVLEGEVVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +     K++ F+   +  M R  +GVR      G  
Sbjct: 716 IALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  +++
Sbjct: 774 QQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAA 830



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 95/254 (37%), Gaps = 24/254 (9%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L+ G++    +  ++  +++      DL        E    + A +++   E   +    
Sbjct: 626 LDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGEVVEAAEIEEVEGETAELVAEP 685

Query: 522 -----VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  +EGD+L  A        ++L S+ G
Sbjct: 686 TGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAG 745

Query: 571 KA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           K   +      ++     G      + L   Q +++  + +S  ++L  S +G       
Sbjct: 746 KVIRFAESVVRIMGRNARGVRG---MRLGKGQQLISMLIPESGAQILTASERGFGKRTPL 802

Query: 629 SEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
           S+     R G+  + + + E+    +  V    G+ + ++ +   L+   +D++   SR 
Sbjct: 803 SKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSSRN 862

Query: 684 GKGVRLQSYKDGGI 697
            +GV L       +
Sbjct: 863 TQGVTLIKLASDEV 876


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/759 (33%), Positives = 424/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +   +K
Sbjct: 5   KNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGDSAAA RYTE
Sbjct: 65  KSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG   +R
Sbjct: 185 HNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGSVIMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES      ++
Sbjct: 244 GKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L  +L  +L H++EV+ 
Sbjct: 304 IELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQKEVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  NID II++IR     ++ K  ++ +F LTE Q  A
Sbjct: 363 RRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE F    
Sbjct: 423 ILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFGDK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E          + +IEKE I + +S+  +I+                ++ 
Sbjct: 482 ----RRSIIIE--GQVDQIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRGVNG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   + D++   L   T D IL  +  GK YTL    +  +S +  G  I  L+++   +
Sbjct: 536 MTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEE 595

Query: 601 DIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            + +        +    L+  +  G     +  +  +  +KGK  LK+  ++ +  V ++
Sbjct: 596 KVNSIIAISDLQEEGTNLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDVQRI 655

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWID 713
           T D  + +V  N + +  + +++  M R  +GV+  +   D  +  +    + E    + 
Sbjct: 656 TDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSPDDYVVGMEV--VDESKKILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +        +  RGG G  V K   ++GK ++
Sbjct: 714 VTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +  + +       + E+    +  +  G I+  K             AL   E DSL
Sbjct: 590 EIEKEEKVNSIIAISDLQEEGTNLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++++ +G+A  + A  + +       ++  I L+ +  +V   V D +
Sbjct: 650 IDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKG-ITLSPDDYVVGMEVVDES 708

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
            K+L V+  G   I + +E     R GK            K+  V  + G + + ++ + 
Sbjct: 709 KKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSIAGNEDLMIMTDQ 768

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++   +  I  + R   GV++ +  D      +     E
Sbjct: 769 GIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKE 809


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 398/768 (51%), Gaps = 30/768 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N +N        +  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L++G GNFG++DGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGD 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++++A  +L+ ++++ +DF   Y+  + EP V PS+FPNLL NG SGIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A   L+DNP+ +   L+E + GPDFPTGG+++  +  I ++Y 
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYE 246

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI DE
Sbjct: 247 TGRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL+ +
Sbjct: 307 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ + +Q    R  IL+GL IA  +IDEII IIR        K  +++ F
Sbjct: 366 LEHQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AIL++RL  L  LE  +I  E + L+ + E   ++L+S  +    I  E+ E
Sbjct: 426 GLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRDRVNQIIYEELLE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +++ F        RRT          +   + +IE+E + V +++ G+I+          
Sbjct: 486 IQKKFGDE-----RRTELLVGEV--LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQ 538

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +  +   + D ++  +   T D +L  +  GK Y +    +        G  I 
Sbjct: 539 NRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPIV 598

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            L+++N  + I           D    LL V+  G       S+       G   + +  
Sbjct: 599 NLLNINSGEKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKE 658

Query: 647 EEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++   + +  +   ++G +    + F+   +  M R   GVR    ++     V    
Sbjct: 659 GDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSMGRSATGVRGIRLRENDYV-VGADV 717

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +         + + + +        +  RGG G        ++G    
Sbjct: 718 LNPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSG 765



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 12/214 (5%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           + ++  G ++              L A+H KEGD L  AL       +++ +  G A + 
Sbjct: 627 LFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            A ++ S       ++  I L  N  +V A V +   ++ ++S KG       ++     
Sbjct: 687 NASDVRSMGRSATGVRG-IRLRENDYVVGADVLNPDSEVFIISEKGFGKRTPAADYPIKG 745

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK     +  EK   +  +  V+G + + ++ +   ++ F I+ + +  R   GV L 
Sbjct: 746 RGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLI 805

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +      +     +       A +    S N
Sbjct: 806 RIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSN 839



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 77/227 (33%), Gaps = 17/227 (7%)

Query: 459 EKIDSLLNSGKQQWNQIACEI------REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           EKI++++N   ++ +     +         +   S   ++         +   D+     
Sbjct: 607 EKIEAVINVSDRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGLIAIHLKEGDQLINAL 666

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            + + + + +  ++ G+        +RS+   +  +  +  +E D +  A   +    + 
Sbjct: 667 IIDQNQNVIIG-THLGYAMSFNASDVRSMGRSATGVRGIRLRENDYVVGADVLNPDSEVF 725

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++S  G     PA +       G+ ++       N  +           +++++ KG   
Sbjct: 726 IISEKGFGKRTPAADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMI 785

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
                ++    R   G   +++  + K+  + KV         +  K
Sbjct: 786 RFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASK 832


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/818 (32%), Positives = 414/818 (50%), Gaps = 89/818 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VSL   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E G  +   ++K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQPF  RY L+ GQGNFG++DGD+ AA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ V+F   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I+I++L+ +I GPDFPT  + +  R+ I E+Y+ GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAAL-INGRKGIEEAYKTGRGKIYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E   +G   I+V EIPYQV K++LIEKIA+ +  K+I  +  +RDES +D   ++ 
Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++ L+ M+  F +N+  L     P+++ L  +++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNNLYALTQMQVTFGINIVAL-DHGQPKLLNLKQLIEAFVLHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ F ++    R  IL+GL IA  N+D II +IR    P+                    
Sbjct: 364 RTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q  AIL+LRL+ L  L   +I  E   LL  
Sbjct: 424 AASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             K+  +L S ++    I  E+ +++E F+       RRT   E++ A      + +I +
Sbjct: 484 IGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S    G  I  ++ LN N+ I        Y+    +++ ++ G   
Sbjct: 596 GRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEEDKFVVMTTAGGIVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +  +E       G   L +  E+++  V    G + + +     +++ FS   +  M R
Sbjct: 656 KIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMGR 715

Query: 684 -GKGVRLQSYK--------------------------DGGISDVICFKICE-GLTWIDSA 715
              GVR                               D  I  V+   I +     + + 
Sbjct: 716 LATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNIDKVVSLVIPKNNGEILAAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+GK +++
Sbjct: 776 QNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 38/227 (16%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L  A  E++   V+ +  G ++ +      +  S  + AL+ ++ D L     
Sbjct: 627 NERITAILPVAAYEEDKFVVMTTAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDI 686

Query: 557 AHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ----------- 600
              ++ I+L S+ G+        + A   L+    G  + L  DLN ++           
Sbjct: 687 TDGSNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDD 746

Query: 601 -----------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                       +V+  +  +  ++L  +  G     +  E    +R  K  + +   E+
Sbjct: 747 NAEETLDLNIDKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSER 806

Query: 650 MKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
              VV        D + ++ +   L+   + ++  + R  +GVRL  
Sbjct: 807 NGKVVAAAQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIR 853


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 399/757 (52%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +ALI+NP+I I  L++++I PDFPT GI +   E + ++Y  GRG   +RA
Sbjct: 184 NLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGI-IYGYEGVKQAYLTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G  P+V+ L  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGM-PRVLNLKQMMEYYIRHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + + A ++R  IL+GL I   N+DE+I  IR            + +F LTE Q  A
Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEKFGLTEIQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    L   +++ S+L + ++Q   I  E+ +VK+++  + 
Sbjct: 422 ILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANPQKQMQIIREELLKVKDVYGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVAG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +T G+ Y L    +        G ++  +++L   +
Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTARGRSLANIMELQPAE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ +  G        E     R G   + +   +++       
Sbjct: 594 KIRAYINIRNFDEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELIDARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GDH + +   +  ++ F   +I  M R   GVR  +         +        T +   
Sbjct: 654 GDHQIILAKSSGYVVRFPESEIRSMGRTAMGVRGITLDADEKCISMVTTKRFDTTLLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +        L KRG  G +  K   ++G  + 
Sbjct: 714 DNGFGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVG 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             + +   +A +     ++    V+ +  G ++              ++A+  +E D L 
Sbjct: 588 ELQPAEKIRAYINIRNFDEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELI 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-T 611
            A       +I+L  + G     P   + S       ++  I L+ ++  ++        
Sbjct: 648 DARLTDGDHQIILAKSSGYVVRFPESEIRSMGRTAMGVRG-ITLDADEKCISMVTTKRFD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             LL V+  G        +     R  +  + + + EK   +V +      D + ++  N
Sbjct: 707 TTLLAVTDNGFGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVGLLDVNDEDDLIIITNN 766

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +    +  I    R   GVRL     G I   + 
Sbjct: 767 GIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALA 802


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/756 (31%), Positives = 394/756 (52%), Gaps = 33/756 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L + YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +   F KSARIV
Sbjct: 13  ISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARIV 72

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARMT++
Sbjct: 73  GDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTRI 132

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            + ++  +D++ VDF   Y+   +EP+V P++ PNLL NG +GIAVGMAT+IP HN++E+
Sbjct: 133 DQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLREV 192

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +A+I++P I++  L+E+I GPDFPTG   +  R  I E+Y  GRG   +R+R  VE
Sbjct: 193 IDGLIAMIEDPNITVSALMEHISGPDFPTGA-YICGRAGIREAYETGRGSLMLRSRCEVE 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +   G   I++TEIPYQ  K+ LIE+IA L+  K+I  + ++RDES      ++    + 
Sbjct: 252 KQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLKKD 311

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++ ++ ++  + + +  +     P+++ L  IL+ ++ HR+ V++RR++  
Sbjct: 312 ENAEVVINQLYKMTPLQRGYGIILLSIVNN-RPEILNLRQILEHFILHRKTVVYRRTAHD 370

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + +  IL+GL IA  N+DE++ +I++    ++ +  +++RF+L+  Q  AIL +RL
Sbjct: 371 LRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINRFALSAIQAQAILEMRL 430

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I  E   L+ E E +  +L         I  E   ++E +        RR
Sbjct: 431 HRLTGLEREKIIEEYQALMKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDE-----RR 485

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548
           T   E        L + MI +E + V +++ G+I+                       + 
Sbjct: 486 TEIIEAPD---EILPEDMIAREDMVVTVTHAGYIKRNPVDLYRAQRRGGKGIRGAGGIDD 542

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +     A T D +L  +  G+ +      +        G+A+  L+DL   + +    
Sbjct: 543 DFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLARGKAVVNLLDLAPEEKLAAIL 602

Query: 607 VYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
              S        C +L+ + KG        E     R+GK  L    ++++       GD
Sbjct: 603 PVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALTFREDDEILAAALTYGD 662

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
             + ++      + F    I  M RG  GVR  +      +  V         + +    
Sbjct: 663 NEILLLSRKGMAVRFHEGDIRPMGRGATGVRGINLGSADELVGVSVLSGDPETSILVVTE 722

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        L +RGG G +  K   R+G  + 
Sbjct: 723 NGYGKRTLVDEYRLIRRGGKGVMAIKASERNGAVVG 758



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 14/210 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
                +    +E   ++ + +G ++                AL F+E D +  A   +  
Sbjct: 603 PVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALTFREDDEILAAALTYGD 662

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-VTAFVYDSTCKLLVVSS 619
           + ILLLS  G A     G++         ++ +   + ++ + V+    D    +LVV+ 
Sbjct: 663 NEILLLSRKGMAVRFHEGDIRPMGRGATGVRGINLGSADELVGVSVLSGDPETSILVVTE 722

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSI 675
            G        E     R GK  + + + E+   VV        D V ++    +++   +
Sbjct: 723 NGYGKRTLVDEYRLIRRGGKGVMAIKASERNGAVVGMLQVTDEDQVMMITNAGQIIRMPM 782

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
             +  + R  +GVRL +   G    V+   
Sbjct: 783 TDLRVIGRNTQGVRLFNL--GAEEKVVALD 810


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/752 (36%), Positives = 438/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P  S+E+LLE++ GPDFPT   I+  R  I + Y  GRG
Sbjct: 182 TDIPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA     ++  EP+T+V+S  GW+RS K H +D   L +K
Sbjct: 477 GD-----DRRSPLTERAE-AKAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPGGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI--CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G   +    +   +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPGAQAAAGEDRLAWLFVLPPQTSVTLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/758 (32%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G  ++ +  ++ + + F  + I  M R   GVR    ++    +VI  ++ E     +  
Sbjct: 657 GSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 652 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 645 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/758 (33%), Positives = 410/758 (54%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 16  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 136 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ +I++L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 196 HNMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLIL-GTEEIRKAYTTGRGVIKMR 254

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 255 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L+ ++ H+  V+ 
Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQEMVIT 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F LTE Q  A
Sbjct: 374 RRTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQA 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ +    
Sbjct: 434 ILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYGDK- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E++        + +I +E + V ++   +I+ +   +          +  
Sbjct: 493 ----RRT---EITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRG 545

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L +  +     +  G AI  L+ + +++
Sbjct: 546 MGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVENDE 605

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        + +   L + +  G       SE  +  R G   + +  ++++  V    
Sbjct: 606 RITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGSIRRNGLKAVNLDEDDELIGVKFTD 665

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G++ + +     K + F  + +  M R  +GVR  +  DG   +V+   +    +  +  
Sbjct: 666 GENRIMLGTRGGKAITFPEEGVRSMGRVARGVRGITLADG--DEVVAMDVLRSDSEVLTV 723

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 724 TEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVG 761



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 18/229 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
            E      A +Q      +    + +  G ++              L A++  E D L  
Sbjct: 601 VENDERITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGSIRRNGLKAVNLDEDDELIG 660

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  +RI+L +  GKA T P   + S       ++  I L    ++V   V  S  +
Sbjct: 661 VKFTDGENRIMLGTRGGKAITFPEEGVRSMGRVARGVRG-ITLADGDEVVAMDVLRSDSE 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +L V+  G       SE    TR GK  + +   EK   VV +        + ++     
Sbjct: 720 VLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVGIRVVRENQELMLITTEGI 779

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAG 716
           ++  S+D+I  +SR  +GV+L +  +   ++ +           +DSAG
Sbjct: 780 VIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMN-----RIVDSAG 823


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/758 (32%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDS 714
           G  ++ +  ++ + + F    I  M R   GVR    ++G   +VI  ++ E     +  
Sbjct: 657 GSKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREG--DEVIGMEVLEDNEKVLIV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L    +++   V +   K
Sbjct: 652 VQMTDGSKNMIIATKHGQSIYFPEANIRVMGRTAAGVRG-IRLREGDEVIGMEVLEDNEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+ KG       ++     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKD 694
           L+ F ID + +  R   GV+L    +
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDE 796



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +EGD +    
Sbjct: 645 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDNEKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++   EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/787 (30%), Positives = 405/787 (51%), Gaps = 47/787 (5%)

Query: 1   MGVDNIS---NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N         ++ + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADENTPVTPEEGGVIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V PS+FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   +++PE   E+LL    E I GPDFPTG ++V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VEIARGGLMGLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +        R+T        D     + +I +E I V ++  G+
Sbjct: 478 RQRGIVSAELAAIVEKYGD-----DRQTKLV---PYDGDMSIEDLIAEEDIVVTVTRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 VKRTKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 --SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    YD+   L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V + D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATDESLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G    ++   +    T++  +    Y +        +  RGG+G    K    
Sbjct: 710 KGMSFREG--DALLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G+ + +
Sbjct: 768 RGELVGA 774



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 37/277 (13%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   A    L     +  P  V+ +  G ++      
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYDAAPYLVLATKGGLVKKTPLKD 643

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A    + D +LL+S   ++    A +  S R  
Sbjct: 644 YDSPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATD-ESLRPM 702

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +       +++  V      +   +  G A      E     R G   K  
Sbjct: 703 GRATSGVKGMSFREGDALLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 762

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V    ++   + V   D +  +  +  ++   +  + E  R   GV+L +   G    
Sbjct: 763 KIVEDRGELVGALVVEETDEILAISLSGGVIRTRVSGVRETGRDTMGVQLINL--GKRDA 820

Query: 700 VICF----------KICEGLTWIDSAGRSYNRSENDL 726
           V+            +  +G   +D        +  D 
Sbjct: 821 VVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTDE 857


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/750 (38%), Positives = 438/750 (58%), Gaps = 25/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + + +   LR   E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+G+   A +K
Sbjct: 5   DADYETQPLREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+ D   S AA RYT
Sbjct: 65  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T+ A+L+L  + E  V++   ++    EP + P++ PNLL NG++GIAVGMAT IP
Sbjct: 125 EARLTRYAQLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+  A + L+D P+ S+  L E I+GPDFPT   I+   E I   Y +G GG R 
Sbjct: 185 PHNLREVVAACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQ 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310
           RA W      R    IV+T +PYQV  S+++E+IA  + +K++P++ED+RDES  D   R
Sbjct: 245 RACWE-----RDGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTR 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +++ P++  +D + LM+ +F  +D+E  + +N+NV+ +   P+V  L  IL EWL  R E
Sbjct: 300 LIITPRSARVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRTE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  +R+  ++ R+ +L G LIA+LNIDE+IAIIR EDKPK V++ RF LTE Q +A
Sbjct: 360 TVCRRLQWRLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLVLMERFGLTERQAEA 419

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L KLEE +I +E D LL E++++ S+LNS  +    I  E++E  + +    
Sbjct: 420 ILELRLRHLAKLEEIKIHAEQDELLRERDRLRSILNSEARLKALIKSELQEDAQKYGDP- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R +      + +A     ++  EP+T+V+S RGWIR+ K H VD   L +K GD 
Sbjct: 479 -----RCSPLVQRGSARALSDTELVPSEPVTLVLSQRGWIRAAKGHDVDAQRLSYKAGDG 533

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            + A    T  + + L + G+AY+LPA  L S RG GE +   + L    +     + D 
Sbjct: 534 YRDAAIGRTNQQAVFLDSQGRAYSLPAHTLPSARGQGEPLTGRLSLPGGGEFSYVLLGDP 593

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGEN 667
               L+ S  G  FI     + +  R GK  L V+   +     ++     D +      
Sbjct: 594 DSLWLLASDHGYGFITRLGNLYSKNRAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTA 653

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYN 720
            +LL+F + ++PE+ +GKG +L          ++  ++ V+          + +  R+  
Sbjct: 654 GRLLVFPLQELPELGKGKGNKLIQIPSPRLKTREEVVAGVLAVPPGR-AVILQAGKRTLT 712

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +DL  +LG+RG  G  +P+GF R  +F
Sbjct: 713 LRPSDLERYLGQRGRRGDALPRGFQRVQQF 742


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/821 (30%), Positives = 411/821 (50%), Gaps = 94/821 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP IS+E L+E+I GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN      N I  E+  + + +        RRT   E+  +     ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDG-----RRT---EIVESGVDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+ N+ +        +     + + ++ 
Sbjct: 596 FTDVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE ++       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSYKDGGISD--------------------------VICFKICEGLTWI 712
            M R  KGVR          D                          V    + E    +
Sbjct: 716 AMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLSRIVSLVVVPETGEVL 775

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 CASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 816



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 38/242 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++ +         +  L A+   E D+L   
Sbjct: 629 DANETVTAILPLTEFPENHYVFMATASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ--------- 600
                  +I+L S +GKA       + A    +    G  + L   ++            
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSD 748

Query: 601 ------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS--- 645
                        IV+  V   T ++L  S+ G       ++     R GK  + +    
Sbjct: 749 DNDDSSDSNVLSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSE 808

Query: 646 -SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
            + E +  V       + ++ +   L+     ++    R  +GVRL    D   +  V+ 
Sbjct: 809 RNGELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVS 868

Query: 703 FK 704
             
Sbjct: 869 ID 870


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 443/750 (59%), Gaps = 20/750 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A + L+D P+ ++++L+E++ GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEDGN-----VVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV+++RF L+E 
Sbjct: 357 FRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPVLMARFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  EI       
Sbjct: 417 QTEAILELKLRHLAKLEEMKIRGEQDELAKERDKLQAILGSERKLNTLLKKEII------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R +        KA  +  +   EP+T+V+S  GW+RS K H +D + L++K
Sbjct: 471 ADAATYGDERRSPMRERDEAKAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + T G++Y+L   +L S RG GE +   + L     +    
Sbjct: 531 AGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTLPAGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           +     K L+ S  G  FI   S+++A  R GK  + +     +   +++     D +  
Sbjct: 591 MASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVIC---FKICEGLTWIDSAGRSYN 720
           +    ++L+F +  +P++S+GKG ++ S +     +++        +    +    R   
Sbjct: 651 ITSTGRMLMFPVADLPQLSKGKGNKIISVQAASGDELLSGLFILPPQSSITLYFGKRKLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               DL  +  +RG  G+ +P+G  R  + 
Sbjct: 711 LRPEDLQKFRAERGRKGTSLPRGLQRIERV 740


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/779 (30%), Positives = 398/779 (51%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++ ++ R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + ++  +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/837 (31%), Positives = 418/837 (49%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+V+ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDG-RPRVLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELED 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 GDEGVIEGEVVEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRTARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QQIISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 85/250 (34%), Gaps = 20/250 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L  G++    +  ++  +++      +L        E    +   + +   +        
Sbjct: 626 LEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIEGEVVEAEEIDEEEGDTPEWVAEP 685

Query: 522 -----VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +         ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRTARGVRGM-KLGKGQQIISMLIPESGAQILTASERGFGKRTPLSK 804

Query: 631 IIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  +G   +       + +  +    G+ + ++ +   L+   + ++  +SR  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQ 864

Query: 686 GVRLQSYKDG 695
           GV L      
Sbjct: 865 GVTLIKLAAD 874


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/779 (30%), Positives = 396/779 (50%), Gaps = 40/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ +          RRT       AD     + +I +E + V I+  G+   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS K     +     K+ D +       T D IL  +T G+ Y   A +L   S
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y     L++ +  G     + +   +N   G 
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTAFDSNRSGGI 648

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK-D 694
             + +   +++   V  +  D + +V  N + + FS     +  M R   GV+   +  D
Sbjct: 649 VAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   +  EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 709 DRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 765



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q       P  V+ +  G ++  K  + D +      A++ ++ D L  A
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTAFDSNRSGGIVAVNLRDNDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSADDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNIDDRLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      E     R GK  L V       ++   + V  D     V    
Sbjct: 722 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +  Q+ +  R  KGVRL +  +G     I     E 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES 822



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 690 LRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 749

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
           +  ++       +V A + D   +L  V+S G        ++    R  KG   + +   
Sbjct: 750 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEG 809

Query: 648 EKMKLVVK---VTGDHVAV 663
           + +  + +    +GD  AV
Sbjct: 810 DTLLAIARNAEESGDDNAV 828


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/823 (31%), Positives = 402/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +ISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDG---------------------------GISDVICFKICEGL-T 710
            M R   GVR                                      V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   S        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGR 705

Query: 572 A--YTLPAGNLLSGRGHG-EAIQLLIDLN-------------------------HNQDIV 603
              +   A   +     G   I+L                                  +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 408/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +I I++L++++  PDFPTGGI +   + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGI-IYGYDGVREAFKTGRGRIVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+LI  K+I  +  IRDES      +++
Sbjct: 244 KAVMEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L     PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNKLYKYTALQSSFSVNNIALV-HGRPQLLNLKDMIHYFVEHRHEVVTR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAII   +N +  +  ++ RF LTE Q  AI
Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKRFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D+++   E    +L +  ++ N I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDILANKSRRMNIIKEELEVIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
            G  R +  E +  D +   + +I  E + + IS+ G+I        +      V     
Sbjct: 477 -GDERRSMIEYAGGDVSI--EDLIPDEKVVITISHAGYIKRTSLTEYKRQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSKTSKGRAIQNLINIEKDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPRTNGINAITIKDGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG+  V +  ++ K + F  ++   M R   GVR     D     V    + +    
Sbjct: 654 KLTTGNSQVMLAVKSGKAIRFEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVA 755



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 12/205 (5%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L+          ++ + +G ++              ++A+  K+GD L  A       ++
Sbjct: 603 LKDEEYINNHYVIMATKKGQVKKTPLEQYSRPRTNGINAITIKDGDELLEAKLTTGNSQV 662

Query: 564 LLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L    GKA           GR       + +  ++++ +    V D    +LVVS  G 
Sbjct: 663 MLAVKSGKAIRFEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESNILVVSENGY 722

Query: 623 AFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQI 678
                  +     R GK    + V+ +    + +K     D + ++ ++   +  ++  +
Sbjct: 723 GKRSSLEDYRITNRGGKGVKTISVTEKTGQLVAIKNVTDEDGLMIINKSGIAIRMAVADL 782

Query: 679 PEMSRGK-GVRLQSYKDGGISDVIC 702
             M R   GVRL + K       + 
Sbjct: 783 RVMGRATQGVRLINIKGKDSIAAVA 807


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/752 (37%), Positives = 443/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+E+LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTERGE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/758 (32%), Positives = 410/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEISI  L+E+I GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYHYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G       S+     + G   +++   +++  V    
Sbjct: 597 QVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTD 656

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G  ++ +  ++ + + F  + I  M R   GVR    ++    +VI  ++ E     +  
Sbjct: 657 GSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 652 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 711 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 771 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 804



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 586 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 644

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 645 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 703

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 704 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 763

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 764 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/769 (31%), Positives = 393/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +        L    E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLV---PFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG   +++   +
Sbjct: 679 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDG--DELLSMNV 736

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 737 VRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   +    L     E  P  V+ +  G ++      
Sbjct: 595 KAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKD 654

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 655 YDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATD-DTLRPM 713

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V  +   +   +  G A      E     R G   K  
Sbjct: 714 GRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAA 773

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   +++I +  R   GV+L +   G    
Sbjct: 774 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINL--GKRDA 831

Query: 700 VICFK 704
           V+   
Sbjct: 832 VVAVA 836



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F++GD L       T   +   +  G A   P          G  
Sbjct: 710 LRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLG 769

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +EI    R   G   + +   
Sbjct: 770 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLGKR 829

Query: 648 EKMKLVVK 655
           + +  V +
Sbjct: 830 DAVVAVAR 837


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/758 (33%), Positives = 409/758 (53%), Gaps = 31/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V+L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM   G+     +K
Sbjct: 24  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L  G GNFG++DGDSAAA RYTE
Sbjct: 84  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++AEL+L+ +D++ VDF D Y+  + EP V P+KFP LL NGT+GIAVGMAT+IP 
Sbjct: 144 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+    L LIDNP+ +I++L+  I GPDFPT G+I+   E I ++Y  GRG  ++R
Sbjct: 204 HNMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLIL-GTEEIRKAYTTGRGVIKMR 262

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +E +  G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES      ++
Sbjct: 263 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIV 322

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  ++  + ++  F + M  L  G+ P +M L  +L+ ++ H+  V+ 
Sbjct: 323 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQETVIT 381

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+GL IA  ++D +I  IR     D  +  ++  F LTE Q  A
Sbjct: 382 RRTRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQA 441

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+LRL+ L  LE  +I+ E   +L   E++  +L    +    I  E+ EV++ +    
Sbjct: 442 ILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRDKYGDK- 500

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E++        + +I +E + V ++   +I+ +   +          +  
Sbjct: 501 ----RRT---EITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRG 553

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  KE D +   L   T   IL  +  G+A+ L +  +     +  G AI  L+ + +++
Sbjct: 554 MGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAVENDE 613

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        + +   L + +  G       SE     + G   + +  ++++  V    
Sbjct: 614 RITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGNIRKNGLRAVNLDEDDELIGVKFTD 673

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G++ + +     K + F  D +  M R  +GVR  +  DG   +V+   +    +  +  
Sbjct: 674 GENRIMLGTRGGKAITFPEDGVRSMGRVARGVRGITLADG--DEVVAMDVLRSDSEVLTV 731

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               Y +           RGG G +  K   ++G  + 
Sbjct: 732 TEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVG 769



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 18/229 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
            E      A +Q      +    + +  G ++              L A++  E D L  
Sbjct: 609 VENDERITAVIQVKEFRADRYLFLGTKHGVVKKTPLSEFGNIRKNGLRAVNLDEDDELIG 668

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  +RI+L +  GKA T P   + S       ++  I L    ++V   V  S  +
Sbjct: 669 VKFTDGENRIMLGTRGGKAITFPEDGVRSMGRVARGVRG-ITLADGDEVVAMDVLRSDSE 727

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           +L V+  G       SE    TR GK  + +   EK   VV +        + ++     
Sbjct: 728 VLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTEKTGPVVGIRVVRENQELMLITTEGI 787

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAG 716
           ++  S+D+I  +SR  +GV+L +  +   ++ +           +DSAG
Sbjct: 788 VIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMN-----RIVDSAG 831


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/769 (31%), Positives = 393/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 30  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 90  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 210 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIP 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 269 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 328 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +        L    E Q
Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 507 D-----DRRSQLV---PFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 678

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG   +++   +
Sbjct: 679 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDG--DELLSMNV 736

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 737 VRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 785



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   +    L     E  P  V+ +  G ++      
Sbjct: 595 KAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKD 654

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 655 YDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATD-DTLRPM 713

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V  +   +   +  G A      E     R G   K  
Sbjct: 714 GRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAA 773

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   +++I +  R   GV+L +   G    
Sbjct: 774 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINL--GKRDA 831

Query: 700 VICFK 704
           V+   
Sbjct: 832 VVAVA 836



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F++GD L       T   +   +  G A   P          G  
Sbjct: 710 LRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLG 769

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +EI    R   G   + +   
Sbjct: 770 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLGKR 829

Query: 648 EKMKLVVK 655
           + +  V +
Sbjct: 830 DAVVAVAR 837


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +    ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/753 (37%), Positives = 453/753 (60%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG
Sbjct: 182 TDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWRKEESE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL EWL+
Sbjct: 297 NPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLS 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RRE + RR ++R++ + +R+ IL+GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ 
Sbjct: 357 YRRETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI    E +
Sbjct: 417 QAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKKEIMADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E S   +A  +   +  EP+T+V+S  GW+RS K H +D S L++K
Sbjct: 477 GDA-----RRSPLQERSE-ARAMSEHDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   S+++A  R GK  L +    K+   +++ GD   +  +
Sbjct: 591 MAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLTPLEINGDDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
            E  ++L+F +  +P++S+GKG ++ S         +  +  ++       LT +    R
Sbjct: 651 TEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLVMKPQDLQKFRAERGRKGTLLPRGLQRIERV 742


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/789 (31%), Positives = 408/789 (51%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG   +   + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGS-YINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E+   G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q +AIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L+   +    +  E+ E+++ +              E+  +     ++ +I +E 
Sbjct: 488 YLIGILSDVSELIRVVKEELVEIRDNYGDERKS--------EIIVSRLDLTREDLITEED 539

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S  G++++         K   V  SA   KE DS+   + A T D +L  S+ G+
Sbjct: 540 MVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y     +    S    G  I  ++ L+ N+ I        +     + + +  G    V
Sbjct: 600 VYWSKVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGWYVFMSTKLGRVKKV 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-G 684
           + SE       GK  + ++  +++  V    G+  + +  +  K + F    +  M R  
Sbjct: 660 DLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GV      D      +     +    + +    Y +          KR   G +     
Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTS 779

Query: 745 PRSGKFLSS 753
            R+GK + +
Sbjct: 780 ERNGKVVVA 788



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S    A+   +GD L          +I++ S  GKA  
Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIR 706

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIA 633
               ++ +       +  +  L+ NQ IV+  V +    +++  +  G       SE   
Sbjct: 707 FDESDVRAMGRSAAGVTGM-RLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRK 765

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R  +  + +S+ E+    +  V+    + + ++ +N  L+  S DQ+ E  R  +GVR
Sbjct: 766 TKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVR 825

Query: 689 LQSYKD 694
           L + ++
Sbjct: 826 LINLRN 831



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +   +   +   +  +  +  +L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + D+   +++++  G        ++    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDH 660
            EK+  +  V  + 
Sbjct: 832 NEKLISLKVVKQED 845


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ + ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++ +F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMGKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   V         + +IE+  + + +S++G+I+          K     +
Sbjct: 477 ----GDKRRTELMVGEV-LTLEDEDLIEETDVLITLSDKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + +DG    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLRDGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 14/222 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRG-VNLRDGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
            ++  ++  I +  R   GV++        + ++ F   + +
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRL--DQDAKIVTFTTVDAV 807



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 85/254 (33%), Gaps = 35/254 (13%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ ++GD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVRGVNLRDGDTVVGASVITDQDEVLIITEKGYGKRTLATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + ++       N  +           L++++  G       + I    R       +  +
Sbjct: 734 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 648 EKMKLVVKVTGDHV 661
           +  K+V   T D V
Sbjct: 794 QDAKIVTFTTVDAV 807


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/789 (31%), Positives = 408/789 (51%), Gaps = 64/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +ALIDN +++IE L++YI  PDFPTG   +   + I+E+Y+ GRG   +RA+  +
Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGS-YINGTDGILEAYKTGRGRVIMRAKVDI 248

Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            E+   G   IV+TEIPYQV K++L+EKIAEL+  K++  + ++RDES +D   V+    
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+EV+ RR+ 
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRKEVVTRRTI 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420
           F ++    R  IL+GLL++  NIDE+I +I+    P     S                  
Sbjct: 368 FELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGV 427

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                ++LTE Q +AIL LRL  L  LE+ +I +E   L+   +
Sbjct: 428 DVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIK 487

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  +L+   +    +  E+ E+++ +              E+  +     ++ +I +E 
Sbjct: 488 YLIGILSDVSELIRVVKEELVEIRDNYGDERKS--------EIIVSRLDLTREDLITEED 539

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S  G++++         K   V  SA   KE DS+   + A T D +L  S+ G+
Sbjct: 540 MVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGR 599

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y     +    S    G  I  ++ L+ N+ I        +     + + +  G    V
Sbjct: 600 VYWSKVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGWYVFMSTKLGRVKKV 659

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-G 684
           + SE       GK  + ++  +++  V    G+  + +  +  K + F    +  M R  
Sbjct: 660 DLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GV      D      +     +    + +    Y +          KR   G +     
Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTS 779

Query: 745 PRSGKFLSS 753
            R+GK + +
Sbjct: 780 ERNGKVVVA 788



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S    A+   +GD L          +I++ S  GKA  
Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIR 706

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIA 633
               ++ +       +  +  L+ NQ IV+  V +    +++  +  G       SE   
Sbjct: 707 FDESDVRAMGRSAAGVTGM-RLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRK 765

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R  +  + +S+ E+    +  V+    + + ++ +N  L+  S DQ+ E  R  +GVR
Sbjct: 766 TKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVR 825

Query: 689 LQSYKD 694
           L + ++
Sbjct: 826 LINLRN 831



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +   +   +   +  +  +  +L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + D+   +++++  G        ++    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDH 660
            EK+  +  V  + 
Sbjct: 832 NEKLISLKVVKQED 845


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/814 (32%), Positives = 406/814 (49%), Gaps = 88/814 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ E  LA I+N +I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R++ 
Sbjct: 188 TEVVEGCLAYINNEDITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRSKA 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++   
Sbjct: 247 DIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ +++  + ++T F +NM  L  G +P++  L  +LK ++ HRREV+ RR+
Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALDNG-LPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------------- 416
            F ++    R  IL+ L +A  NIDEII +IR    P                       
Sbjct: 366 IFELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLER 425

Query: 417 -----------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ LTE Q  AIL LRL  L  LE  +I  E   LL E  
Sbjct: 426 AGTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +E 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAATHDIDMEELIARED 537

Query: 520 ITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+++          +      SA   KE D ++  L A+T D IL  ST GK
Sbjct: 538 VAVTLSHAGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGK 597

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L   S    G+ I  ++ L   + I        +     + + +  G     
Sbjct: 598 TYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVTEFSDDKFIFMATGDGTVKKT 657

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ-------- 677
             S        G   + +  ++ +  V    G+  + +  +  K++ F   +        
Sbjct: 658 SLSSFANVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDEN 717

Query: 678 -----------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
                            +  M R   GVR     +G     +     +G   +      Y
Sbjct: 718 GQPVLDEHGQPEIKFKGVRAMGRTASGVRGMKLAEGDQVVSLIVPSNDGD-ILTVTQNGY 776

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G +  K   R+G+   +
Sbjct: 777 GKRTTLGEYPTKGRATQGVVSIKVSERNGQVAGA 810



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +    + +  G ++     S        L A++ +E DSL   
Sbjct: 625 EEGERITAILPVTEFSDDKFIFMATGDGTVKKTSLSSFANVRSNGLIAVNLREDDSLIGV 684

Query: 555 LHAHTTDRILLLSTDGKA----------------------YTLPAGNLLSGRGHGEAIQL 592
                   I+L S  GK                       +  P       R  G     
Sbjct: 685 DITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPVLDEHGQPEIKFKGVRAMGRTASG 744

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +  + L     +V+  V  +   +L V+  G        E     R   G   +KVS   
Sbjct: 745 VRGMKLAEGDQVVSLIVPSNDGDILTVTQNGYGKRTTLGEYPTKGRATQGVVSIKVSERN 804

Query: 649 KMK--LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
                 V    GD   ++ +   L+   + ++ ++ R  +GV L    + 
Sbjct: 805 GQVAGAVQTEEGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAED 854


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/834 (31%), Positives = 417/834 (50%), Gaps = 107/834 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 25  KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 85  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 144

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 145 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 204

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I+I++L+++I GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 205 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 263

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 264 RADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 323

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G+ P+ + L  +L+ ++ HRREV+
Sbjct: 324 VIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKELLEAFVRHRREVV 382

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 383 TRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEA 442

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 443 MVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 502

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L +  +    I  E+  VK  F  +     RRT   E            +I
Sbjct: 503 TQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILESR---LDLTLADLI 554

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      +A   KE D ++  L A++   +LL S
Sbjct: 555 TEEERVVTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFS 614

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 615 SKGKVYWLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELD 674

Query: 610 ---------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                                      +   + + ++KG        +       G   L
Sbjct: 675 DAEGLVIEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIAL 734

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           K+   + +       G   V +  +  K++ F   ++  M R  +GVR     +G    +
Sbjct: 735 KLEEGDTLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMGRNARGVRGMRLPEG--QRI 792

Query: 701 ICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I   I E     + ++ R Y +           RGG G +      R+G  + +
Sbjct: 793 ISMLIPEPDAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGA 846



 Score = 93.7 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 94/247 (38%), Gaps = 17/247 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSK-STDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-- 521
           L+ G++    +  ++  +++  ++   +L        E    D         EK+  T  
Sbjct: 645 LDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEHDDVDDVEGDDDSDEKDEPTGA 704

Query: 522 --VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
              + + +G ++        +  +  L AL  +EGD+L  A        +++ S  GK  
Sbjct: 705 YIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDTLIAAAVTDGAQEVMMFSDGGKVI 764

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 +     +   ++ +  L   Q I++  + +   ++L  S +G        E   
Sbjct: 765 RFKESKVRIMGRNARGVRGM-RLPEGQRIISMLIPEPDAQILTASVRGYGKRTAMEEFPR 823

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  + + + E+    +  V  + G+ + ++ +   L+   +D++  + R  +GV 
Sbjct: 824 RGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVT 883

Query: 689 LQSYKDG 695
           L     G
Sbjct: 884 LIKLSKG 890


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 408/756 (53%), Gaps = 29/756 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   L + YL Y+LS I  RAIPD+RDG KPVHRRI+ A  E+G  +    KKSAR
Sbjct: 5   QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 65  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   +  ++++ VDFR  Y+    EPVV P++ PNLL NG++GIAVGMAT+IP HN+ 
Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C A L L+D+   +I+ L++++ GPDFPTGG +    + +V++Y  GRG  +VR +  
Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTGRGTVKVRGKVE 243

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +G   IV+ EIPY + KS L+EKIA L+  +RI  + D+RDES      V+    
Sbjct: 244 IEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLK 303

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   PD+++ +++  + +E+ + +NM  +     PQ++ L   L  +L HRRE++ RR+ 
Sbjct: 304 RGTIPDIVVNALYKYTPLESSYGINMLAVVDN-RPQLLDLKSALSHFLEHRREIIIRRTR 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++A+IR    P   K  ++ RF L+E Q  AIL++
Sbjct: 363 YDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAILDM 422

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E   LL + E   S+L + +     +  E  E+++ ++       
Sbjct: 423 RLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYAT------ 476

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
           +R T   +   +   + + +I  + + + +S RG+I+          +     ++ LH  
Sbjct: 477 KRRTEVLMDELEGIAI-EDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTS 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D ++  L       +LL +  GK + L    +   S    G  I  L+ L  ++ + T
Sbjct: 536 DDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTT 595

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
                 +      L V+ +G       S      + G   + +  ++++ +V ++   DH
Sbjct: 596 VLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHNDDH 655

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
           V +       + F+   +  M R   GV+  +    D  ++  +          +  +  
Sbjct: 656 VVLTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMSISSN 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +     L  L  RGG G    +  P++G  + +
Sbjct: 716 GYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 751



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 82/231 (35%), Gaps = 21/231 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E        L      ++   + ++ RG ++        ++    L A+  ++ D L + 
Sbjct: 588 EKDEWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMV 647

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDS 610
              H  D ++L +  G A           R  G +   +  + L+ +  +V       D 
Sbjct: 648 REIHNDDHVVLTTGGGMAIRFAC---PDVRPMGRSATGVKGVALSGDDRVVACAVLPGDD 704

Query: 611 TCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           T   ++ +SS G             +R GK          + + +  +     + + ++ 
Sbjct: 705 TSTEIMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGAMPVRDDEALVLLT 764

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              K++  S+D++  + R   GV L    +G I  V+ F   +    ++ +
Sbjct: 765 STNKIIRMSVDEVRSVGRATMGVMLVRLDEGAI--VVGFDRVDEREVVEES 813


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/814 (32%), Positives = 412/814 (50%), Gaps = 88/814 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G  F   F+KS
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF+  Y+E   EP+V P+++PNLL NG  GIAVGMAT+IP HN
Sbjct: 131 LARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A ID+PE+++E+L+E + GPDFPTGG I+  R  I  +   GRG   +R R
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EEV +    IVVTEIPYQV K+R++E+IAEL+  K+I  + D+RDES  D   ++  
Sbjct: 250 VHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVE 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + ++T F +N   L+ G  P++M L  I+  ++A R EV+ RR
Sbjct: 310 IKRDAIAEVVLAQLYRFTPLQTSFGVNSLALN-GGRPEMMTLRDIIVAFIAFREEVITRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  +L GL IA  NIDE+I +IR    P                      
Sbjct: 369 TIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLIR 428

Query: 414 ------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 + +    + L+E Q  AIL+LRL  L  LE  +I  EL  +  + E    +L+S
Sbjct: 429 LIDEPGRAIEDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSS 488

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ E++E F+       RRTT  E    +     + +I +E + V ++N 
Sbjct: 489 RPRLMEVMRGELMEIREQFATP-----RRTTIEE---NEFEADIEDLIAREDMVVTVTNT 540

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S ++ K+ D L      +T   +L  S+ G AY L    
Sbjct: 541 GYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKVYR 600

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G  +  G+A+  L+ L+  + I T               ++ V+SKG+      S+ 
Sbjct: 601 LPLGNPQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDF 660

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGV 687
                 GK  +K+   E++  V   +   D V +     K + F +  + E  SR   GV
Sbjct: 661 TEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGV 720

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWIDSAGRSY 719
           R       G  +VI   I                             E    +      +
Sbjct: 721 RGIRL--DGEDEVISMSILRHTDYDSETRDAFLKGDLPADQMDKMVAEQQFILTVTENGF 778

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +  RGG G        ++G  ++S
Sbjct: 779 GKRTSAFEYRITGRGGSGIANLDMTAKTGLVVAS 812



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 46/272 (16%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGW 529
           IA +++  +         G+       +   +  +    + E E        + ++++G 
Sbjct: 592 IAYKLKVYRLPLGNPQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGD 651

Query: 530 IRSLKSHSV------DLSALHFKEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLS 582
           +R                A+   EG+ L         +D +LL +  GKA   P  ++  
Sbjct: 652 VRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVRE 711

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---------------------------LL 615
            +         I L+   ++++  +   T                             +L
Sbjct: 712 FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPADQMDKMVAEQQFIL 771

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLL 671
            V+  G        E     R G     +    K  LVV        D + +V +  KL+
Sbjct: 772 TVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHEDDIMLVSDGGKLI 831

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +D I    R  +GV L   +      V+ 
Sbjct: 832 RMPVDDIRIAGRKTQGVTL--LRTAENERVVS 861


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/837 (31%), Positives = 421/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALID+PE++I++L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G+ P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRLLNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I+    P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L S ++    I  E+ ++K  F  +     RRT   E+  +        +I
Sbjct: 484 GQIGELIRILTSPERLLEVIREELEKIKAEFGDA-----RRT---EIVASQVDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      +A   K+ D ++  L A++   +LL S
Sbjct: 536 TEEERVVTISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLKTYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G    V   +     + G 
Sbjct: 656 AEGALLEGEVVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             L +   + +       G   V +  +  K++ F+   +  M R  +GVR      G  
Sbjct: 716 IALDLVEGDTLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R Y +           RGG G +      R+G  + +
Sbjct: 774 QRLISMLIPESGAQILTASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIGA 830



 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 78/195 (40%), Gaps = 19/195 (9%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD---RILLLSTDGK 571
             + +  G ++ +      +     L AL   EGD     + A TTD    ++L S  GK
Sbjct: 690 IFMATAFGTVKKVPLVQFSRPRKAGLIALDLVEGD---TLIAAATTDGAKEVMLFSDAGK 746

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                   + +   +   ++ +  L   Q +++  + +S  ++L  S +G       S+ 
Sbjct: 747 VIRFAERVVRTMGRNARGVRGM-KLGKGQRLISMLIPESGAQILTASERGYGKRTPLSKF 805

Query: 632 IANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               R G+  + + + E+    +  V    G+ + ++ +   L+   +D++  + R  +G
Sbjct: 806 PRRGRGGQGVIAMVTNERNGALIGAVQVREGEEIMLISDQGTLVRTRVDEVSSLGRNTQG 865

Query: 687 VRLQSY-KDGGISDV 700
           V L    +D  +  +
Sbjct: 866 VMLIKLARDETLVGL 880


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/798 (32%), Positives = 421/798 (52%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDNP ++IE+L+EYI+ PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   I+VTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q DAIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + + S+L+  K+    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIDRVKYLISILSDIKELIRVVKDELVEIRDNYGDQRKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE      KGK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 KLGRVKKVDLSEFARPRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       +  I  VI     EG+  + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGI-VLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSKGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  L+HNQ IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RLHHNQKIVSVIVTNPDEGI 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 49/135 (36%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   +  +  + I+L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F    +  MSRG  GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFKQSVVRGMSRGATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGSLSG 750



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 14/217 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A      +++ G   G      ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFKQ-SVVRGMSRGATGVKGVNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGSLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            ++  ++  I +  R   GV++        + ++ F 
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRL--DQDAKIVTFT 802



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 86/257 (33%), Gaps = 27/257 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E  +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGESIQTIINVESERSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRS 532
             +RT+  E +              +   +   + E++   ++ +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ ++ 
Sbjct: 679 MSRGATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + K+
Sbjct: 739 ANVAEKNGSLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKI 798

Query: 651 KLVVKVTGDHVAVVGEN 667
                VT +   V  EN
Sbjct: 799 VTFTTVTAEKEEVGTEN 815


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/823 (31%), Positives = 403/823 (48%), Gaps = 94/823 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +I IE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                S++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYKDGGI---------------------------SDVICFKICEGL-T 710
            M R   GVR        I                             V+   I      
Sbjct: 716 AMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD 775

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   S        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHGEAIQLLIDLN--------------------------HNQDIV 603
              +   A   +     G     L   +                              +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/758 (36%), Positives = 421/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL   AA+KK
Sbjct: 9   EGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAAYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 69  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTEA 128

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 129 RMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  ++NPE  +E+L++ + GPDFPTGG+I   ++ I+++Y  GRG  +VRA
Sbjct: 189 RLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIF-GKKGIIDAYSTGRGRIKVRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+  +    IV+ E+PYQV KSRLIE IA+L+  K+I  + +IRDES  +   V+ 
Sbjct: 248 KTHIEQ-HKNREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRVVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++ ++F  + M+T F + M  +     P+V  L  +L  ++ HR+ V+ R
Sbjct: 307 ELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKE-PKVFTLPELLDLFINHRKTVIIR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+GL IA  NIDE+I IIR      + +  ++SRF L+E Q  AI
Sbjct: 366 RTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSRFDLSEIQARAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L  LE  +I+SEL  L    E ++S+L S       I  E+ EVKE FS    
Sbjct: 426 LEMRLRRLTGLEIEKIESELAELRKTIEYLESILKSETMIEEIIKKELLEVKEAFSDE-- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E+         + +I  EP+ V I++RG+I+          +      +A+
Sbjct: 484 ---RRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRRGGKGKTAV 537

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              E D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI+L+ ++ 
Sbjct: 538 TTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGSRTAKGKAVVNLINLDKDEK 597

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        ++    L+  +  G       SE       G   + +   +++     +  
Sbjct: 598 IKAIIPTQDFNEDKSLVFFTRNGIVKRTNLSEYSNIRSVGVRAINLDENDELIDAKIIKP 657

Query: 659 D--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDS 714
           D   + VV +    + F +  + E+ R  +GV    +K DG           E    +  
Sbjct: 658 DTKWLFVVTKKGMCIRFPVSDVREIGRVARGVTAIKFKIDGDYVCGATTIENEEDEILIV 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +   +           R G G +  K  P++G  + 
Sbjct: 718 SEKGMGKRTPASEYREQSRAGKGVIAMKLTPKTGDVVG 755



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 15/217 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +     KA +      ++   V  +  G ++           SV + A++  E D L  A
Sbjct: 593 DKDEKIKAIIPTQDFNEDKSLVFFTRNGIVKRTNLSEYSNIRSVGVRAINLDENDELIDA 652

Query: 555 LHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTC 612
                  + L + +  G     P  ++         +  +   ++ +       + +   
Sbjct: 653 KIIKPDTKWLFVVTKKGMCIRFPVSDVREIGRVARGVTAIKFKIDGDYVCGATTIENEED 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENR 668
           ++L+VS KG       SE    +R GK  + +       + + +V       +  +    
Sbjct: 713 EILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTPKTGDVVGVVFVEEDKDLMCLTSAG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           K++   +  I    R   GV++ + +  G   V+   
Sbjct: 773 KMIRVDMQSIRRAGRATSGVKIVNVE--GKDRVVSIA 807


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 420/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNP+++I++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 ADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 20/254 (7%)

Query: 456 AEKEKIDSLLNSGKQQWNQ---IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            E E+I ++L    +   Q   +  E+ E     +  T L        EV   D  T + 
Sbjct: 627 EEGERITAMLQIDLEALQQNADLDEELEE-----ADDTVLEGELVEAEEVDEEDGDTPEW 681

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                     + +  G ++        +  S  L AL  KEGD+L  A        +++ 
Sbjct: 682 VAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMF 741

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  GK        +     +   ++ +  L   Q I++  + +S  ++L  S +G     
Sbjct: 742 SDAGKVIRFAESVVREMGRNARGVRGM-KLGKGQRIISMLIPESGSQILTASERGFGKRT 800

Query: 627 EESEIIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
             S+     R  +G   +       + +  +    G+ + ++ +   L+   + ++  +S
Sbjct: 801 PLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLS 860

Query: 683 R-GKGVRLQSYKDG 695
           R  +GV L      
Sbjct: 861 RNTQGVTLIKLAAD 874


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/757 (32%), Positives = 395/757 (52%), Gaps = 29/757 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N+   N     NV  V ++  +++ +L Y++S I  RA+PD+RDG KPVHRRI+++  
Sbjct: 12  IKNMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQY 71

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E GL    A+KK A  VG V+G+ HPHGD SVYD+LVRLAQ F   YPL+ G GNFG++D
Sbjct: 72  EDGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVD 131

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AAYRYTEARM++++  +L  +D+D V+F   Y++   EP V PS+FPNLL NG++G
Sbjct: 132 GDPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTG 191

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E  +A   LIDNP+  +E L+EYI GPDFPTG +I+  R  I  +
Sbjct: 192 IAVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIM-GRAGIRAA 250

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VRA   + E   G + I+VTE+PYQV K+RLIE IA+++  KRI  + +I 
Sbjct: 251 YATGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNID 310

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S  +   +     R   P +++  ++  + M+T F + M  +  G  P+ + L  +L+
Sbjct: 311 DHSDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGE-PKTLTLKEMLQ 369

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E++  + EV+ RR+ + ++    R  IL+GL IA  NIDEII+IIRN       K  M  
Sbjct: 370 EYIKFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTE 429

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L + Q +AI+ +RL  L  LE  +I+ EL  L  + +  + +L   ++    +  E+
Sbjct: 430 RFGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDILAHEERVKAIVKDEL 489

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
             ++  ++             E+         + +I +E   + ++N G+++  K  +  
Sbjct: 490 MGIRNKYADERK--------TEIMAVSGEVDIEDLIPQEECVLTLTNFGYVKRQKMDTYR 541

Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +S +  +E D        ++ D ++  ++ G+ Y L    +   S    G  
Sbjct: 542 TQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMN 601

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ +   + + +      +D    L++V+  G       S   +  + G   +++  
Sbjct: 602 IANLLPITAEEKVTSMIRVPEFDEEKYLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDE 661

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V    G + + V  +    + F    +  + R  +GV+  +  +     V   +
Sbjct: 662 GDELAWVRVTDGSNELIVATKKGMAIRFHERDVRLVGRTARGVKAITLGEDDCV-VGMAR 720

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           + EG   +  +   Y R        +  RGG G L  
Sbjct: 721 LREGGKVLTVSETGYGRLSPISDYRIQYRGGKGLLNY 757



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 15/208 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKI 553
                   + ++    ++E   V+++  G I+     + + +      A+   EGD L  
Sbjct: 608 ITAEEKVTSMIRVPEFDEEKYLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDEGDELAW 667

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 ++ +++ +  G A      +  L+     G      I L  +  +V        
Sbjct: 668 VRVTDGSNELIVATKKGMAIRFHERDVRLVGRTARG---VKAITLGEDDCVVGMARLREG 724

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVAVVGENR 668
            K+L VS  G   +   S+     R GK  L        +   + V    D V ++  + 
Sbjct: 725 GKVLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVAAIKVVDLDDDVILISADG 784

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            ++    D I E +R  KGVR+    + 
Sbjct: 785 VIIRIQADSIRECARPSKGVRVMRIGED 812


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/824 (31%), Positives = 412/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ +VK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 84/536 (15%), Positives = 179/536 (33%), Gaps = 89/536 (16%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATSISSRSWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
             R+ ++     + ++KE+               +  I   + IL         I E + 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEE------------LLVKIADLLHILSSAERLMEVIREELE 504

Query: 406 II-----RNEDKPKPVMVSRFSLTENQVDAILNLRLRS--------LRKLEEYQIKSELD 452
            +      +             L +      + + L          L   E  +   +  
Sbjct: 505 DVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGK 564

Query: 453 NLLAEKEK--IDSLL-----------NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           +    KE+  I+ LL           +S  + +      ++  +   +     GR     
Sbjct: 565 SATKMKEEDFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNI 619

Query: 500 CEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSL 551
             +   ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L
Sbjct: 620 LPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDEL 679

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN----- 599
                   ++ I+L S+ G+            G L +G RG   A+   I  + +     
Sbjct: 680 IGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIE 739

Query: 600 ---------------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                            +V+  V      +L V+  G     + SE    +R  K  + +
Sbjct: 740 EISDDNAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISI 799

Query: 645 SSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              E+   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 800 KVSERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 K-----RRTELMVGEV--LSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR     ++ +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 SESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + +DG    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSTVRGMSRIATGVKGVNLRDGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDESESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMSRIATGVKG-VNLRDGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDESESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ ++GD++  A      D +L+++  G      A    +    G
Sbjct: 674 STVRGMSRIATGVKGVNLRDGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/818 (31%), Positives = 402/818 (49%), Gaps = 89/818 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G     A+ K
Sbjct: 6   QDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKAYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +ISI++L+++I GPDFPT  + +  R  I E+Y+ GRG   VRA
Sbjct: 186 NLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAAL-INGRRGIEEAYKTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +    +G   IVVTEIPYQV K++L+EKI ELI  K+I  +  I D S ++   +  
Sbjct: 245 KAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRLEI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ R
Sbjct: 305 DIKRDAVGEVVLNHLYALTQMQVTFGINMVAL-DHGQPKLFNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419
           R+ + ++    R  IL+GL IA  NID +I +IR                          
Sbjct: 364 RTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPML 423

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I SE   +L +
Sbjct: 424 EAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILVQ 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +   +L S ++    I  E+  VK  F+ +     RRT   E++ A      + +I +
Sbjct: 484 IGEYLHILTSIERLREVIREELELVKTNFNDA-----RRT---EITTASSDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L        G  I  ++ L  N+ I        YD    +L+ ++ G   
Sbjct: 596 GRLYWLKVYQLPEASRGARGRPIVNILPLEENERITAILPVASYDEDKFVLMATAGGIVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
               +E       G   + +  E+++  V    G + + +     +++ F+   +  M R
Sbjct: 656 KTALTEFSRPRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAMGR 715

Query: 684 -GKGVRLQSYK--------------------------DGGISDVICFKICEGL-TWIDSA 715
              GVR                               D  I  V+   + +     + + 
Sbjct: 716 TATGVRGIKLALTNDLSDEESAVEIEEVSEDNSQESLDLNIDKVVSLVVPKNDGEILTAT 775

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +           R   G +  K   R+GK +++
Sbjct: 776 QNGYGKRTKLEEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 38/233 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L  A  +++   ++ +  G ++        +  S  + A++ ++ D L   
Sbjct: 625 EENERITAILPVASYDEDKFVLMATAGGIVKKTALTEFSRPRSNGIIAVNLRDEDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ--------- 600
                ++ I+L S+ G+        + A    +    G  + L  DL+  +         
Sbjct: 685 DITDGSNEIMLFSSQGRVVRFAESAVRAMGRTATGVRGIKLALTNDLSDEESAVEIEEVS 744

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  V  +  ++L  +  G     +  E    +R  K  + +   
Sbjct: 745 EDNSQESLDLNIDKVVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVS 804

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           E+   VV  T     D + ++ +   L+   + ++  + R  +GVRL    + 
Sbjct: 805 ERNGKVVAATQVEEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAED 857


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/754 (37%), Positives = 438/754 (58%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++     E ++   L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MPDTAIYTAEGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G   D  
Sbjct: 61  LSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  AEL+L   D+  +D++  ++    EP + P++ PNLL NG +GIA
Sbjct: 121 SFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP+HN++E+  A + L+++P+ ++E L+  I  PDFPT   IV   + I++ YR
Sbjct: 181 VGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEILKLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RAR+  E+       IV+T +PYQV  SR++E+IA    AK++P++ED RDE
Sbjct: 241 TGNGSLRQRARYTREQGD-----IVITALPYQVSGSRVLEQIAAQFNAKKLPMIEDFRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++++   P+VM L  IL 
Sbjct: 296 SDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDLREILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R E + RR   R++ +  R+ +L GLLIA+LN+DE+I I+R ED+P+PV++ RF 
Sbjct: 356 EWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEPRPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D +LN RLR L +LEE +I++E   L AE++ +  LL   +     +  EI   
Sbjct: 416 LTEPQADYVLNTRLRQLARLEEMKIRAEQAELAAERDGLQRLLGDERALKGLVRDEIAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E +    A  +  +   EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AERYGDA-----RRSPLVERAA-AAAIDETELTPSEPLTVVLSEKGWVRAAKGHEVDATT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+        +    + L + G++Y LPA    S RG GE +   +D       
Sbjct: 530 LSYRAGDAFLSLARLRSNQTAVFLDSTGRSYALPAHTFPSARGQGEPLTGRLDPPPGARF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
           VT    ++  + L+ S  G  FIV   E+IA  + GK  L +    ++   V+   + G 
Sbjct: 590 VTVLGDNAETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEGS 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGL-TWID 713
            VA V     LL+F + ++PEM+RGKG ++     G     G   +    + EG    + 
Sbjct: 650 SVAAVTTAGHLLLFPLAELPEMARGKGNKIIGIPAGRAGAEGERLIAVAVVGEGANLTVL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           S  R       DL  + G+RG  G L+P+GF R 
Sbjct: 710 SGKRELTLKPADLALYRGERGRRGKLLPRGFQRV 743


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/762 (36%), Positives = 449/762 (58%), Gaps = 29/762 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+      + V+  SL    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDILADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
            G+G  R+RA + +E+       I+VT +P+QV  ++++E+IA L+ AK  ++P + D+R
Sbjct: 241 TGKGSVRMRAVYHIEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D ++LM+ +F  +++E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLKNLRNL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR  + PK  +++R
Sbjct: 356 LVEWLEFRINTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL S  +    +  E+ 
Sbjct: 416 FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELI 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   + +   KA  +  ++  E ITVV+S +GW+RS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVQRAE-AKALTETELLPNEKITVVLSEKGWVRSAKGHDIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K A    +    + + + G++Y++PA  L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
           +     + D     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V    
Sbjct: 590 NFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I EG T
Sbjct: 650 SNWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGST 707

Query: 711 WIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LVLQAGKRTLSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/778 (32%), Positives = 397/778 (51%), Gaps = 40/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D +S       + +  + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRII+A
Sbjct: 1   MSDDTLSGD---TYDRIFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYA 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSAR V + +G+ HPHGD ++YD+LVRLAQP+V RYPL+ GQGNFG+
Sbjct: 58  MYDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE +MT +A  +++ + E+AVDF   Y+ +  EP V PS+ PNLL NG+
Sbjct: 118 RGNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESR 236
           SGIAVGMAT+IP HN+ E+ EA   ++DN +     +++  +E + GPDFPT G+IV   
Sbjct: 178 SGIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIV-GD 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG  R+R    +EEVG     IV+TE+PY V     I  IAE + A ++ 
Sbjct: 237 SGIKDAYTTGRGSIRMRGVTEIEEVGT-RQVIVITELPYNVNPDNFISGIAEQVAAGKMT 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S +ET F  NM  L  G VP+ +
Sbjct: 296 GISKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDG-VPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L+ ++AH+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     D+
Sbjct: 355 RLDQMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 414

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++S   + E Q DAIL ++LR L  LE  +I  +L  + AE      +L   ++Q 
Sbjct: 415 AREGLMSLLDVDEVQADAILAMQLRRLAALERQKIVDDLAAIEAEIADYKDILAKPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +A E+REV +          RRT       A     ++ +I +E + V I+  G+   
Sbjct: 475 AIVADELREVVDKHGDE-----RRTKLV---AATGDVTEEDLIARENVVVTITATGYAKR 526

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                 +S K     +     K+ D +K      T D IL  +  G+ Y L A  L    
Sbjct: 527 TKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAG 586

Query: 584 -RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y     L++ +  G       ++  +    G 
Sbjct: 587 RAARGQHVANLLEFQPEEKIAQVIQIQTYQDAPYLVLATRDGRVKKSRLTDYESARSAGL 646

Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  + +     V   D + +V E  + + F+ D   +  M R   GV+   ++ G
Sbjct: 647 IAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQLRPMGRATAGVKGMRFR-G 705

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +    + +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 706 DDQLLAMTTVSDGQYLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGA 763



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 18/236 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    +  P  V+ +  G ++  +      + S  L A++  EGD+L  A
Sbjct: 601 QPEEKIAQVIQIQTYQDAPYLVLATRDGRVKKSRLTDYESARSAGLIAINLNEGDTLIGA 660

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL+S  G++    A +    R  G A   +  +    +  ++         
Sbjct: 661 SLVGDDDDILLVSEQGQSIRFTADD-EQLRPMGRATAGVKGMRFRGDDQLLAMTTVSDGQ 719

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G       +E     R G   +         K+   + V   D +  +    
Sbjct: 720 YLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGALAVEEDDQIFAITSAG 779

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE----GLTWIDSAGRSY 719
            ++   ++QI   SR   GVRL    D      I   + +      T +    ++ 
Sbjct: 780 GVIRTEVNQIRPSSRATMGVRLVDLGDDVELLAIDVNVEDEGEQEATAVAKGEKTL 835


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/751 (37%), Positives = 443/751 (58%), Gaps = 25/751 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TDMTMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  
Sbjct: 357 YRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K
Sbjct: 477 GD-----DRRSPMVERAE-AKALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDSYLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + +     L+ S  G  FI + S++++  + GK  L +    ++     +  +  D +  
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +        +T + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVT-LHAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R  +   +DL  + G+RG  GS++P+G  R 
Sbjct: 710 RKLSLKPSDLDNFRGERGRRGSILPRGLQRV 740


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/759 (33%), Positives = 423/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +   +K
Sbjct: 5   KNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VD +D Y+    EP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG   +R
Sbjct: 185 HNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGSVIMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES      ++
Sbjct: 244 GKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L  +L  +L H++EV+ 
Sbjct: 304 IELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQKEVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  NID II++IR     ++ K  ++ +F LTE Q  A
Sbjct: 363 RRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTEIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ EVKE F    
Sbjct: 423 ILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEKFGDK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E          + +IEKE I + +S+  +I+                ++ 
Sbjct: 482 ----RRSVIIE--GQVDQIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRGVNG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   + D++   L   T D IL  +  GK YTL    +  +S +  G  I  L+++   +
Sbjct: 536 MTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEE 595

Query: 601 DIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            + +        +    L+  +  G     +  +  +  +KGK  LK+  ++ +  V ++
Sbjct: 596 KVNSIIAISDLQEEGTSLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSLIDVQRI 655

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWID 713
           T D  + +V  N + +  + +++  M R  +GV+  +   D  +  +    + E    + 
Sbjct: 656 TDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSPDDYVVGMEV--VDESKKILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +        +  RGG G  V K   ++GK ++
Sbjct: 714 VTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 12/223 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +  + +       + E+    +  +  G I+  K             AL   E DSL
Sbjct: 590 EIEKEEKVNSIIAISDLQEEGTSLIFSTKYGIIKKSKLGDYASILKKGKIALKLDEDDSL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++++ +G+A  + A  + +       ++  I L+ +  +V   V D +
Sbjct: 650 IDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKG-ITLSPDDYVVGMEVVDES 708

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
            K+L V+  G   I + +E     R GK            K+  V  + G + + ++ + 
Sbjct: 709 KKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSIAGNEDLMIMTDQ 768

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             ++   +  I  + R   GV++ +  D      +     E +
Sbjct: 769 GIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEI 811


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/821 (30%), Positives = 415/821 (50%), Gaps = 94/821 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP IS+E L+E+I GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + + ++    R  IL+GL +A  NID II  I+    P                      
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV+AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN      N I  E+  + + +  +     RRT   E+  +     ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RRT---EIVESGVDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  +  L+ L  N+ I        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE ++       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQS---------YKDGGISD-----------------VICFKICEGLTWI 712
            M R  KGVR             +D  + +                 ++   + E    +
Sbjct: 716 AMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVPETGEVL 775

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    Y +          KRGG G +  K   R+G+ +S+
Sbjct: 776 CACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISA 816



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 40/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++ +         +  L A+   E D+L   
Sbjct: 629 EANETITAILPLTEFPENHYVFMATASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--------QLLIDLNHNQ------ 600
                  +I+L S +GKA      ++ +     + +           ID+   +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L   + G        +     R GK  + +   
Sbjct: 749 DDNDDSSDSNVVSRIVS-LVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTS 807

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    D   +  V+
Sbjct: 808 ERNGELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVV 867

Query: 702 CF 703
             
Sbjct: 868 SI 869


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 185/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKITLTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   I ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADD 855


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/767 (33%), Positives = 424/767 (55%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     + + +  + +   + + Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+++G
Sbjct: 1   MSEEKNEMIDKIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    +++KSA +VG+V+GK HPHGD +VYD++V+LAQ F  RYPL++G GNFG+IDGDS
Sbjct: 61  LVPEKSYRKSATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++   +L+ +D++ VDF   Y+E   EP V P+++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEAKMQKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN++E+ +A + LIDN E ++E ++++I GPDFPTG  I+  + SI ++Y  
Sbjct: 181 GMATSIPPHNLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIM-GKGSIRDAYMT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR++  +EE+  G   I+VTEIPYQV K+R+IEKIA+L+  KRI  + D+RDES
Sbjct: 240 GRGKVTVRSKADIEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R ++P++++ +++  S ++  F + M  L  G  P+V+ +  +L  +L
Sbjct: 300 NRDGIRIVIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGE-PKVLNIRDMLVHYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++ V+ RR+ + ++    R  IL+GL+IA  NID +I IIR  D     K  +   F 
Sbjct: 359 NHQKNVVRRRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL+ L  LE  +I+ E   L+      +S+L         I  E+ ++
Sbjct: 419 LSDIQSQAILDMRLQRLTGLERGKIEEEFAELMKNIAYYESILQDQSILLGIIKDEMLKI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E          RRT   E +           I  E +TV  ++ G+I+          +
Sbjct: 479 REKHGDK-----RRTEITEAAD---EINILDTIPDEEVTVTFTHYGYIKRIPMDTYKAQR 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592
                ++++  ++ D ++  L       IL L+  G+ Y L A  +  SGR   G  I  
Sbjct: 531 RGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKGTNIVN 590

Query: 593 LIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  N+ +   ++     +   L++ + KG     + SE   +TR G   + +  +++
Sbjct: 591 LIPLEKNEKVTSFISIRDVPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDE 650

Query: 650 MKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V    G+    +V +    + F   Q+ +M R   GVR          +V+  ++ +
Sbjct: 651 LINVKTTDGEQDFIIVTKKGMAISFDEKQVRDMGRAAMGVRAIRLAPD--DEVVAMELVD 708

Query: 708 -GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  + + Y +  N     L  RGG G    K   ++G  + +
Sbjct: 709 PNKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISEKTGILVGA 755



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 16/218 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
              E +    + +    +  E   V+ + +G I+  +      S      A+  +E D L
Sbjct: 592 IPLEKNEKVTSFISIRDVPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDEL 651

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
                       ++++  G A +     +   R  G A   +  I L  + ++V   + D
Sbjct: 652 INVKTTDGEQDFIIVTKKGMAISFDEKQV---RDMGRAAMGVRAIRLAPDDEVVAMELVD 708

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVG 665
              +LLV+S KG        +    TR GK        EK  ++V        + + ++ 
Sbjct: 709 PNKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISEKTGILVGAKAVYKDEEIMIIN 768

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            +  L+  S++QI  +SR   GV++    +  +   + 
Sbjct: 769 SDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALA 806


>gi|332685541|ref|YP_004455315.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
 gi|332369550|dbj|BAK20506.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311]
          Length = 815

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 413/762 (54%), Gaps = 29/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+   
Sbjct: 2   DEEMRENIQDVNLTGEMKESFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARM+++A  +L+ +++D VD+   Y++ + EP V P++FPNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARMSKIALEMLRDINKDTVDYHGNYDDTEREPDVLPARFPNLLVNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ EA   L+D PE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G 
Sbjct: 182 NIPPHNLAEVVEAIDLLMDKPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  + E+  G   I+VTE+PY V K+RLIE+I+EL   KRI  + D+RDES+ + 
Sbjct: 241 ITVRAKVELTELPNGKERILVTELPYMVNKARLIERISELHRDKRIEGITDLRDESSREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R +   +++ +++ L+ ++T F  NM  +  G VP+++ L  IL+ ++ H++
Sbjct: 301 MRIIIDVRRDVSASVVLNNLYKLTALQTSFGFNMLAIEKG-VPKILSLKQILENYVEHQK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F  +    R  IL+GL IA  +IDEIIA IR     D+ K  ++ RF L++ 
Sbjct: 360 VVIKRRTIFDKKKAQSRAHILEGLRIALDHIDEIIATIRQSQSDDEAKSALIGRFELSDR 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   LL     ++ +L S ++    I  E+ ++++ F
Sbjct: 420 QAQAILDMRLRRLTGLERDKIEQEYQELLKLISDLEDILASPERIVEIIKKELADIRDRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       RRT          +   + +IE+E + V ++N G+I+          +    
Sbjct: 480 SDK-----RRTELLIGEV--LSLEDEDLIEEEKMVVTLTNNGYIKRMANSEFRAQRRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +     D +K  +   T D +L  + +GK Y      +        G  I  L+ +
Sbjct: 533 GVQGMGVHADDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEVPEYGRTAKGIPIINLLGI 592

Query: 597 NHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + N+ + T        +    L   +  G       +        G   + +  ++++  
Sbjct: 593 DSNETVQTIISVTGQAEEGHYLFFTTKNGTVKRTAVTAFSNIRSNGLIAIGLKEDDELVN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+  +G+   ++G +      F    + +M R   GVR    ++     V    + E   
Sbjct: 653 VILTSGEQNIIIGTHTGYSTTFKETAVRDMGRTASGVRGIRLRENDYV-VGASLLDENTE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +      Y +    +   +  RGG G        ++G    
Sbjct: 712 VLVITENGYGKRTKAIEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 18/229 (7%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                            E+       +  G ++           S  L A+  KE D L 
Sbjct: 592 IDSNETVQTIISVTGQAEEGHYLFFTTKNGTVKRTAVTAFSNIRSNGLIAIGLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +       I++ +  G + T       + R  G     +  I L  N  +V A + D 
Sbjct: 652 NVILTSGEQNIIIGTHTGYSTTFKE---TAVRDMGRTASGVRGIRLRENDYVVGASLLDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     +  E     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NTEVLVITENGYGKRTKAIEYPVKGRGGKGIKTANITEKNGPLAGLATVRGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
              ++ F+   + +  R   GVRL   ++   + V+   + +    I+ 
Sbjct: 769 KGIIIRFNAGSVSQTGRSTLGVRLIRMEE--TAKVVTMAVIDPEEIIEE 815


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/751 (37%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 397/760 (52%), Gaps = 33/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 8   RITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T+IP HN
Sbjct: 128 MSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  GRG   +RA+
Sbjct: 188 LSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+  
Sbjct: 247 VDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVID 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR
Sbjct: 307 VRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGA-PKVLSLKQILQYYLQHQEEVVRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  Q  AIL
Sbjct: 366 TEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E   ++A       +L   ++    I  E+ E++E F      
Sbjct: 426 DMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKFGDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 483 --RRTELMVGEV--LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  +   T D +L  +  GK Y +    +   S    G  +  L+ ++  + I
Sbjct: 539 VHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGIDSGESI 598

Query: 603 VTAF-------VYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                        D+  + L  ++ +G A     +E +     G   + +   +++  VV
Sbjct: 599 QAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVV 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +   N   + F   ++  M R   GVR    ++     V    +      +
Sbjct: 659 ITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGIRLRENDYV-VGSAVLAPESKVM 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 718 VITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 8/180 (4%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   S  L A++ K+GD +   +       I++ + +G A +   G + S       ++
Sbjct: 635 FMNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I L  N  +V + V     K++V++ KG        E     R GK      +   + 
Sbjct: 695 G-IRLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNG 753

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               LV     + V ++ +   ++ F++D +    R   GV +   K    S V    I 
Sbjct: 754 PLAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVI--KTDENSKVATMAIV 811



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 64/202 (31%), Gaps = 22/202 (10%)

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------ 524
            E  E + +F  +     +RT   E        L+   ++     + +            
Sbjct: 610 DEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVVITDGHQNIIIG 669

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+        +RS+   +  +  +  +E D +  +       ++++++  G     P
Sbjct: 670 THNGYAISFKEGEVRSMGRSATGVRGIRLRENDYVVGSAVLAPESKVMVITEKGYGKQTP 729

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A         G+ I+       N  +      +    +++++ +G         +    R
Sbjct: 730 AEEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGR 789

Query: 637 K--GKTFLKVSSEEKMKLVVKV 656
              G   +K     K+  +  V
Sbjct: 790 STLGVHVIKTDENSKVATMAIV 811


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVT--GDHVAVVGENR 668
           ++L+++ KG       +E     R GK     K++ +  +   +      + + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGNEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGNEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 397/760 (52%), Gaps = 33/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 8   RITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ ++++ VDF++ Y+  + EP V PS+FPNLL NG +GIAVGM T+IP HN
Sbjct: 128 MSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  GRG   +RA+
Sbjct: 188 LSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+  
Sbjct: 247 VDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVID 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR
Sbjct: 307 VRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGA-PKVLSLKQILQYYLQHQEEVVRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIR        K  +++ +SL+  Q  AIL
Sbjct: 366 TEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E   ++A       +L   ++    I  E+ E++E F      
Sbjct: 426 DMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKFGDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 483 --RRTELMVGEV--LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++  +   T D +L  +  GK Y +    +   S    G  +  L+ ++  + I
Sbjct: 539 VHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGIDSGESI 598

Query: 603 VTAF-------VYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                        D+  + L  ++ +G A     +E +     G   + +   +++  VV
Sbjct: 599 QAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVV 658

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +   N   + F   ++  M R   GVR    ++     V    +      +
Sbjct: 659 ITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGIRLRENDYV-VGSAVLAPESKVM 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 718 VITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 8/180 (4%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   S  L A++ K+GD +   +       I++ + +G A +   G + S       ++
Sbjct: 635 FMNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I L  N  +V + V     K++V++ KG        E     R GK      +   + 
Sbjct: 695 G-IRLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKNG 753

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               LV     + V ++ +   ++ F++D +    R   GV +   K    S V    I 
Sbjct: 754 PLAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVI--KTDENSKVATMAIV 811



 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 64/202 (31%), Gaps = 22/202 (10%)

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------ 524
            E  E + +F  +     +RT   E        L+   ++     + +            
Sbjct: 610 DEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNGLKAINLKDGDEVINVVITDGHQNIIIG 669

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+        +RS+   +  +  +  +E D +  +       ++++++  G     P
Sbjct: 670 THNGYAISFKEGEVRSMGRSATGVRGIRLRENDYVVGSAVLAPESKVMVITEKGYGKQTP 729

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A         G+ I+       N  +      +    +++++ +G         +    R
Sbjct: 730 AEEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGR 789

Query: 637 K--GKTFLKVSSEEKMKLVVKV 656
              G   +K     K+  +  V
Sbjct: 790 STLGVHVIKTDENSKVATMAIV 811


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/773 (31%), Positives = 403/773 (52%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  + +SN        +  V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEEEMSN-------RITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+  A   L+DNP+ + E L++ + GPDFPTGG+++  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVL-GKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGKGTIIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  +   ++    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  I
Sbjct: 293 VNDETDREGMRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGA-PKILSLKEI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+ EV+ RR+ F ++  + R  I++GL IA  +IDEII IIR        K  +
Sbjct: 352 LTYYLEHQEEVVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +S++ L++ Q  AIL++RL  L  LE  +I++E   L+        +L   ++    I  
Sbjct: 412 MSKYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E++  F  +      R T  +V         + +IE++ I V +++ G+I+      
Sbjct: 472 ELKEIQRRFGDA------RRTELQVGDI-TNLEDEDLIEQQDIVVTLTHNGYIKRLPVDE 524

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +     D ++  + + T D +L  +  GK +++    +        G
Sbjct: 525 FKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEIPEYGRSAQG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             I  L+ ++  + I            D+   L  V+ +G        E       G   
Sbjct: 585 IPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFKNIRSNGLKA 644

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   +++  V  +  D   ++G +    + FS   +  M R   GVR    ++G    
Sbjct: 645 INLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSMGRAAAGVRGVRLREGDFV- 703

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   ++      +  + + + +        +  RGG G        ++G    
Sbjct: 704 IGAGQLNPDSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAG 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 14/207 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E   A       A  + +     ++ +G ++              L A++  +GD L  A
Sbjct: 597 EKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFKNIRSNGLKAINLHDGDELI-A 655

Query: 555 LHAHTTDRILLLST-DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           +     D+ +++ T +G A +  A  + S       ++  + L     ++ A   +   +
Sbjct: 656 VEIIDHDQNMIIGTHEGYAVSFSASAVRSMGRAAAGVRG-VRLREGDFVIGAGQLNPDSR 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           +LV+S KG       +E     R GK    V+  EK   +  +  V GD  + +V     
Sbjct: 715 VLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAGLTTVDGDEDIMLVTTEGV 774

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           ++ F ++ + E  R   GV L    DG
Sbjct: 775 IIRFGVETVSETGRATIGVHLIKLTDG 801



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 64/171 (37%), Gaps = 11/171 (6%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSL 551
             +   D+    + +   + + +  ++ G+        +RS+   +  +  +  +EGD +
Sbjct: 645 INLHDGDELIAVEIIDHDQNMIIG-THEGYAVSFSASAVRSMGRAAAGVRGVRLREGDFV 703

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A   +   R+L++S  G     PA         G+ I+ +     N  +      D  
Sbjct: 704 IGAGQLNPDSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAGLTTVDGD 763

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
             +++V+++G         +    R   G   +K++   K+  + +V  + 
Sbjct: 764 EDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEE 814


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/837 (31%), Positives = 419/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 ADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 94/286 (32%), Gaps = 24/286 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L  G++    +  ++  +++       L     T  E    +   + +   +        
Sbjct: 626 LEEGERITAMLQIDLEALQQNADLDELLDEADDTVLEGELVEAEEVDEEDGDTPEWVAEP 685

Query: 522 -----VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +     +   ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRNARGVRGM-KLGKGQRIISMLIPESGSQILTASERGFGKRTPLSK 804

Query: 631 IIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  +G   +       + +  +    G+ + ++ +   L+   + ++  +SR  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQ 864

Query: 686 GVRLQSYKDG----GISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           GV L          G+  +      E    I++          D  
Sbjct: 865 GVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEA 910


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/770 (31%), Positives = 394/770 (51%), Gaps = 30/770 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N  N +  +   V  V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M 
Sbjct: 1   MANKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMH 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+     +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++D
Sbjct: 61  ELGVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEAR++++A  +L+ +++D +DF+  Y+  + EP V PS+FPNLL NG SG
Sbjct: 121 GDGAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+  A   L+ NP+ +   L+E + GPDFPTGG+++  +  I ++
Sbjct: 181 IAVGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVM-GKSGIRKA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G   VRA+  +E    G   I+ TE+PY V K++LIE+IAEL   KRI  + DI 
Sbjct: 240 YETGKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDIN 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R    ++++ +++ L+ M+T F  NM  +  G  P+++ L  IL 
Sbjct: 300 DESDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPKILSLKEILN 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            +L H+ EV+ RR+ + +     R  IL+GL IA  +IDEII IIR     D  K  ++ 
Sbjct: 359 YYLEHQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L + Q  AIL++RL  L  LE  +I  E + L+ + E+  ++L S ++    I  E+
Sbjct: 419 GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRERVNEIIYQEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E++  F        RRT          +   + +IE+E + + +++ G+I+        
Sbjct: 479 LEIQNKFGDP-----RRTELLVGEV--LSLEDEDLIEEEDVIISLTHNGYIKRLPTSEFK 531

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  +     D ++  +   T D +L  +  GK Y +    +        G  
Sbjct: 532 AQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIP 591

Query: 590 IQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +  L+++ +N+ I                L  V+  G       S+       G   + +
Sbjct: 592 VINLLNIGNNEKIQAVINVSDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLKAINL 651

Query: 645 SSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++++  V+  + D   ++G +    + F+   +  M R   GVR    ++     V  
Sbjct: 652 KDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRGVRLRENDYV-VGS 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +         +   Y +        +  RGG G        ++G    
Sbjct: 711 DILKPDSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPLAG 760



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 14/201 (6%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E     ++  G ++              L A++ K+ D +   L A     I++ +  G 
Sbjct: 618 EKDLFFVTLMGTVKRTPVSDFANIRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGY 677

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A +  A ++ S       ++  + L  N  +V + +     ++ ++S  G       +E 
Sbjct: 678 AVSFNAADVRSMGRSATGVRG-VRLRENDYVVGSDILKPDSEVFIISENGYGKRTPAAEY 736

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK     +  EK   +  +  V G+  + ++ +   ++ FS++ + +  R   G
Sbjct: 737 PIKGRGGKGIKTANITEKNGPLAGLTTVNGEEDIMLITDQGVMIRFSVEDVSQTGRATLG 796

Query: 687 VRLQSYKDGGISDVICFKICE 707
           V L    DG  + V      E
Sbjct: 797 VHLIRMTDG--AKVATMAKVE 815



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D       +  ++   ++ ++RG+        +RS+   +  +  +  +E D +  +   
Sbjct: 654 DDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRGVRLRENDYVVGSDIL 713

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                + ++S +G     PA         G+ I+       N  +      +    ++++
Sbjct: 714 KPDSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPLAGLTTVNGEEDIMLI 773

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           + +G        ++    R   G   ++++   K+  + KV    
Sbjct: 774 TDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQD 818


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/751 (37%), Positives = 443/751 (58%), Gaps = 25/751 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TDMTMDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F  +D+E  F +N+N+L +   PQV  L  I+ EWL 
Sbjct: 297 NPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR  + RR   R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF LT  
Sbjct: 357 YRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L KLEE +I+ E D L  EKE ++ LL S ++    I  E+    E +
Sbjct: 417 QADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  ++ +I  EPITVV+S +GWIR  K H VD S L +K
Sbjct: 477 GD-----DRRSPMVERAE-AKALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS        +    + L +DG++Y L + +L S R  GE I   ++L    ++    
Sbjct: 531 SGDSYLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + +     L+ S  G  FI + S++++  + GK  L +    ++     +  +  D +  
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAG 716
           +    ++L+F I  +P++ +GKG ++ +        ++  +S +        +T + +  
Sbjct: 651 ITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVT-LHAGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R  +   +DL  + G+RG  GS++P+G  R 
Sbjct: 710 RKLSLKPSDLDNFRGERGRRGSILPRGLQRV 740


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 477 ----GDKRRTELMIGEV-LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I      +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTV-VGASVITNQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V  +  
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRG-VNLREGDTVVGASVITNQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEV 812



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVRGVNLREGDTVVGASVITNQDEVLIITEKGYGKRTLATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/769 (30%), Positives = 399/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+   +I +E L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L  G  P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKG-RPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +          T   + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-- 703
           + +  V    G   + +     + + F    +    R   GV+  +  D G  +V+    
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGQDEVVGMIS 710

Query: 704 -KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + RG I+        +  +  + A+  ++ D L      +    +++ +  G+A   
Sbjct: 618 LFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRF 677

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
               +         ++ +   +  QD V   +   +     +LVVS KG        +  
Sbjct: 678 HESVVRPSGRTAMGVKGMTLDDDGQDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYR 737

Query: 633 ANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  EK   +  +  VT  + + ++ ++   +   +  +  + R   GV
Sbjct: 738 ITNRGGKGVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGV 797

Query: 688 RLQSY-KDGGISDVICFKIC 706
           +L    K G     +C  + 
Sbjct: 798 KLIDLSKRGDEIASVCSVVS 817


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/762 (35%), Positives = 447/762 (58%), Gaps = 29/762 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDNLADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP+V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ ++E+L E+I GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
            G+G  R+RA + VE+       I+VT +P+QV  ++++E+IA L+ AK  + P + D+R
Sbjct: 241 TGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIADLR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   RIV+ P N  +D + LM+ +F  +++E+ + +N+N++ +   PQ+  L  +
Sbjct: 296 DESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLKNLRAL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  R   + RR  FR+  ++RR+ +L GLLIAYLN+DE+I IIR E+ PK  ++ R
Sbjct: 356 LVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAKLIER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL+S  +    +  E+ 
Sbjct: 416 FALSEIQADYILDTRLRQLARLEEMKLRDEQDELLKEQAKLQALLSSEAKLKKLVRSELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +  E +        RR+   E +   KA  +  ++  E +TVV+S +GWIRS K H +D 
Sbjct: 476 KDAETYGD-----DRRSPIVERAE-AKALTEHDLLPNEKVTVVLSEKGWIRSAKGHEIDA 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GD  K +    +    +++ + G++Y+L    L S RG GE +   +      
Sbjct: 530 TGLSYKAGDGFKTSAAGRSNQSAVVIDSTGRSYSLATHTLPSARGQGEPLTGRLTPPPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                 + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+     V    
Sbjct: 590 TFECVLMPEEDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRE 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
            + +A V    +LLIF I  +P++ +GKG ++          ++  ++D+    + EG T
Sbjct: 650 HNWLASVTTEGRLLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEGAT 707

Query: 711 WIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  AG R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 708 LVLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/778 (29%), Positives = 392/778 (50%), Gaps = 37/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+ +     + + V  + ++  ++  Y+ YA+S I  RA+P++RDG KPVHRRII+A
Sbjct: 1   MSDDSGNTGGNDLFDRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSAR V + +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 61  MYDNGYRPERSYVKSARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+
Sbjct: 121 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A    +D+ +     ++E ++E + GPDFPT G+IV  +
Sbjct: 181 GGIAVGMATNIPPHNLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDK 240

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG  ++R    +EE  RG   IV+TE+PYQV    L+  IAE +   +I 
Sbjct: 241 -GIKDAYTTGRGSIKMRGVTSIEEE-RGRTIIVITELPYQVNPDNLVSSIAEQVRDGKIA 298

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +  G VP+ +
Sbjct: 299 GISKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTL 357

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            LD +L+ ++ H+ +V+ RR+  R+   ++R  IL+GL+ A   +DE+IA+IR    P+ 
Sbjct: 358 RLDQLLRLYVDHQIDVIVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEI 417

Query: 416 VMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  L    E Q DAIL +RLR L  LE  +I  EL  L      +  +L   ++Q 
Sbjct: 418 ARTGLMDLLDIDELQADAILRMRLRQLAALERQKIIDELKELELTIADLKDILARPERQR 477

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+   +        RRT       A     ++ +I +E +   I++ G+   
Sbjct: 478 QIVRDELEEIVNNYGD-----DRRTQII---AATGDVTEEDLIARENVVATITSTGYAKR 529

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 R+ K     +     K+ D ++      T D IL  +  G+ Y L A  L   S
Sbjct: 530 TKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPEAS 589

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ + +G     + ++  +    G 
Sbjct: 590 RTARGQHVANLLEFQPGEHIAQVIQLQTYEDAPYLVLATKQGRVKKSKLTDYDSARSGGL 649

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  + +      +  D + +V E  + + F+ D   +  M R   GV+   ++  
Sbjct: 650 IAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPMGRATAGVKGMRFRGE 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +    + ++G    R++ +     G RGG+G    K   + GK + +
Sbjct: 710 DALLALTVVREDSYLMVATSGGYAKRTKMEEYPAKG-RGGLGVATFKYNKKRGKLIGA 766



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  K    D +      A++  EGDSL  A
Sbjct: 604 QPGEHIAQVIQLQTYEDAPYLVLATKQGRVKKSKLTDYDSARSGGLIAINLNEGDSLIGA 663

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G+A    A +  + R  G A   +  +       ++   V     
Sbjct: 664 QLCSANDDLLLVSEEGQAMRFTADD-DTLRPMGRATAGVKGMRFRGEDALLALTVVREDS 722

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            L+V +S G A   +  E  A  R G             K+   + V   D +  +  + 
Sbjct: 723 YLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNKKRGKLIGALVVDQDDEIFCITTDG 782

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I   SR   GVRL     G     I   + +
Sbjct: 783 SVVRSNVKDIRPSSRQTMGVRLVHLDKGSELLAIDRNVED 822


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/755 (34%), Positives = 408/755 (54%), Gaps = 30/755 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +  ++KKSAR+
Sbjct: 3   QITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEARM++
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSK 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++   L  +++  VDFRD Y+    EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E
Sbjct: 123 LSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    + L+DNPE  IE L+++I GPDFPTG +    +  + E+Y  GRG  ++R    +
Sbjct: 183 LINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGK-GLREAYLTGRGSIKIRGVVNI 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE   G   IV+TEIPY + KS ++EKIA+L+   +I  + D+RDES      V+    +
Sbjct: 242 EEKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ S++  + +E  F +NM        PQ+M L  IL  +L HRREV+ RR+ F
Sbjct: 302 GAIADIIINSLYKFTQLEQSFGINMMA-VNANRPQLMNLKQILAAFLEHRREVIIRRTRF 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +   ++R  IL+GL IA  NIDE++ IIR   N D+ +  ++ RF L++ Q  AIL++R
Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDRFELSKVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  E   +L + E   S+L + +     I  E+ E+K+ ++        
Sbjct: 421 LQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVLKGVIRDELVEIKDNYATE------ 474

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           R T       D     + +I  +   + +S RG+I+          K     ++ +  K+
Sbjct: 475 RKTVLMDHNPD-DIDIEDLIPDDDAVITLSRRGYIKRTPLSNYQKQKRGGKGIAGVQTKD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
           GD +   L       +LL ++ GK + +    +        G  I  L+ L  ++ I TA
Sbjct: 534 GDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGAHIANLLPLEKDETIATA 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++  C  L V+  G       +      + G   + +   + +  V +V+ D   
Sbjct: 594 MTMREFEEECFFLFVTKSGMIKRSSIALYRNCRQSGIRAVALKEGDALITVKEVSADSEA 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRS 718
            +V  N   + FS      M R   GV+  + +  D  +S V+     E +  +  +   
Sbjct: 654 VLVTRNGTSIRFSCQDARAMGRVASGVKGIALRPGDEVVSGVVT-GDEERVQLLTISEGG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +     +  RGG G +  +   ++GK L S
Sbjct: 713 YGKRTDIDQHRIQTRGGKGIISMRVTTKTGKVLGS 747



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 72/195 (36%), Gaps = 10/195 (5%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            +  S+    R+ +     + A+  KEGD+L            +L++ +G +      + 
Sbjct: 613 MIKRSSIALYRNCRQS--GIRAVALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDA 670

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGK 639
            +       ++ +     ++ +      D    +LL +S  G     +  +    TR GK
Sbjct: 671 RAMGRVASGVKGIALRPGDEVVSGVVTGDEERVQLLTISEGGYGKRTDIDQHRIQTRGGK 730

Query: 640 TFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
             + +     + + +  ++    D V ++    K++   +  +  + R   GVRL    D
Sbjct: 731 GIISMRVTTKTGKVLGSIMVSPEDEVVLLTSGNKIIRMGVKDVSLVGRATQGVRLVRMDD 790

Query: 695 GGISDVICFKICEGL 709
           G    V+ F + +  
Sbjct: 791 G--DHVVGFDLVQDA 803


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/839 (31%), Positives = 420/839 (50%), Gaps = 112/839 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +++++ L++YI GPDFPT GI +  R  I+E+YR GRG   +RA
Sbjct: 186 NLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGI-INGRAGIIEAYRTGRGRIYIRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   +VVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   V
Sbjct: 245 RVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   PD+++ +++  + M++ F +N+  L  G+ P+ M L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ + ++    R  IL+G  +A  NID +I +I+    P                   
Sbjct: 364 TRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVEA 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +   ++  +L S ++    I  E+ +VK  F  +     RRT   E+  + +      +I
Sbjct: 484 SLIGELIRILTSPERLMEVIREELEKVKAEFGDA-----RRT---EIIASRQDLTIADLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ +S         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 TEEERVVTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I      D                
Sbjct: 596 SKGKVYWLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDD 655

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                           +   + + ++ G        +       
Sbjct: 656 EGLVIEGEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSA 715

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   LK+   + +       G   V +  +  K+L F+  ++  M R  +GVR      G
Sbjct: 716 GLIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMGRTARGVRGMRL--G 773

Query: 696 GISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I E G   + ++ R + +           RGG G +      R+GK + +
Sbjct: 774 KDQRLISMLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGA 832



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 89/258 (34%), Gaps = 23/258 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----------AM 514
           L+ G++    +  ++  +++      DL          +       +             
Sbjct: 626 LDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIEGEATEVVEAEEVEEVEGETPELVA 685

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
                   + +  G ++        +  S  L AL  +EGD+L  A        ++L S 
Sbjct: 686 EPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLEEGDTLIAAAITDGAKEVMLFSD 745

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK        + +       ++ +  L  +Q +++  + +S  ++L  S +G       
Sbjct: 746 AGKVLRFAESKVRTMGRTARGVRGM-RLGKDQRLISMLIPESGAQILTASERGFGKRTGL 804

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +     R G+  + +     + + +  +    G+ + ++ +   L+   +D++    R 
Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSSSGRN 864

Query: 684 GKGVRLQSY-KDGGISDV 700
            +GV L    KD  +  +
Sbjct: 865 TQGVTLIKLAKDETLVGL 882


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/771 (31%), Positives = 399/771 (51%), Gaps = 39/771 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 2   DETPQGDRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + K AR+VGEV+G  HPHGD  +YD+LVRLAQP+  R  L+ G GNFG+   D AAA
Sbjct: 62  EKGYYKCARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +++ +DED VDFR  Y+   SEPVV P++FPNLL NG++GIAVGMA
Sbjct: 122 MRYTECKMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T+IPSHN++E+ +     + NPE + E+LL    E I GPDFPTG +IV  R  I ++YR
Sbjct: 182 TNIPSHNLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIV-GRRGIEDAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA    EE+  G  C+VVTE+PYQV    L  KIAEL+   ++  + D+RDE
Sbjct: 241 TGRGSITMRAVVNTEEI-NGRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDE 299

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S+   + ++    R     +++ +++  + ++  F  NM  L    VP+ + LD  ++ 
Sbjct: 300 SSSRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDD-VPRTLSLDAFIRH 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W+ H+ +V+ RR+ FR++    R  IL GLL A   IDE++A+IR     D+ +  ++  
Sbjct: 359 WVTHQIDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIEL 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++ E Q +AIL ++LR L  LE  +I++E + L+A+     ++L S ++Q   ++ E++
Sbjct: 419 LTIDEIQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAILESPERQRRIVSEELQ 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
            + + +        RR+        +     + +I +E + V I+  G+         RS
Sbjct: 479 AISDKYGD-----DRRSQLV---PYEGDMSIEDLIPEEDVVVTITRGGYTRRTRTDLYRS 530

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
            K     +     K+ D +       T   +L  +  G+ Y   A  L   +    G+ +
Sbjct: 531 QKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHELPDTARDARGQHV 590

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+    ++ I        Y+ T  L++ +  G        +  +    G   + +  +
Sbjct: 591 ANLLAFLPDEKIAQVLDLRDYEQTPYLVLATKNGLIKKTPLKDYDSPRSAGVIAINLRED 650

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICF 703
           +++     V+  D + +V +  + L F+     +  M R   GV    +++    +++  
Sbjct: 651 DELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPMGRATSGVIGMRFRED--DELLSM 708

Query: 704 KICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    T++  +    Y +     +  L  RGG+G +  K     G  + +
Sbjct: 709 DVVRPDTFLFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKTVDERGGLVGA 759



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 16/208 (7%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+ P  V+ +  G I+       D      + A++ +E D L  A      D +LL+S 
Sbjct: 611 YEQTPYLVLATKNGLIKKTPLKDYDSPRSAGVIAINLREDDELIAAELVSPEDDLLLVSK 670

Query: 569 DG---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
                +           GR     I   +    + ++++  V      L   +S G    
Sbjct: 671 QAQGLRFTATDEALRPMGRATSGVIG--MRFREDDELLSMDVVRPDTFLFTATSGGYGKR 728

Query: 626 VEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
                     R G   +   + ++    +   V   GD V  +  +  ++   + ++   
Sbjct: 729 TAVEMFPLRGRGGLGVIAAKTVDERGGLVGAAVVDEGDEVMAITLSGGVIRTRVSEVRPT 788

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEG 708
           SR   GVR+ +   G     I      G
Sbjct: 789 SRDTMGVRVINLGKGDTVLAIARNGDPG 816



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 99/306 (32%), Gaps = 28/306 (9%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             RR+   +    +R    KG+  A L  D+I+           ++         +  A 
Sbjct: 519 YTRRTRTDLYRSQKRG--GKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKA- 575

Query: 432 LNLRLRSLRKLEEYQIKSELDNL-----LAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
                  L           + NL       +  ++  L +  +  +  +A +   +K+  
Sbjct: 576 -----HELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYEQTPYLVLATKNGLIKKTP 630

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRSLKSH 536
            K  D  R         R D   +   ++  E   +++S +            +R +   
Sbjct: 631 LKDYDSPRSAGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPMGRA 690

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH-GEAIQLLID 595
           +  +  + F+E D L         D  L  +T G      A  +   RG  G  +     
Sbjct: 691 TSGVIGMRFREDDELLSMDVVRP-DTFLFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKT 749

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
           ++    +V A V D   +++ ++  G       SE+   +R   G   + +   + +  +
Sbjct: 750 VDERGGLVGAAVVDEGDEVMAITLSGGVIRTRVSEVRPTSRDTMGVRVINLGKGDTVLAI 809

Query: 654 VKVTGD 659
            +  GD
Sbjct: 810 AR-NGD 814


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/837 (31%), Positives = 419/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 ADDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 24/286 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L  G++    +  ++  +++      +L     T  E    +   + +   +        
Sbjct: 626 LEEGERITAMLQIDLEALQQNADLDEELDEADDTVLEGELVEAEEVDEEDGDTPEWVAEP 685

Query: 522 -----VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +     +   ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRNARGVRGM-KLGKGQRIISMLIPESGSQILTASERGFGKRTPLSK 804

Query: 631 IIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  +G   +       + +  +    G+ + ++ +   L+   + ++  +SR  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQ 864

Query: 686 GVRLQSYKDG----GISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           GV L          G+  +      E    I++          D  
Sbjct: 865 GVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEA 910


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/752 (37%), Positives = 445/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLTERGE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 401/757 (52%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PNLL NG+SGIAVGMAT+IP  
Sbjct: 124 RMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +A+I+NPEI I  +++++I PDFPTGGI +   E + ++Y  GRG   +RA
Sbjct: 184 NLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGI-IYGYEGVRQAYLTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDG-VPRVLNLKEMMHYYVKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F + A ++R  IL+GL I   N+DE+I  IR        +  ++ RF L+E Q  A
Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMERFGLSEIQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I +E    L   + + S+L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASPQKQMQIIREELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +  G+ Y L    +        G ++  +++L   +
Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRSLANIMELRPTE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    ++    +++ ++ G        +     R G   + +   +++       
Sbjct: 594 QIKAYINIRNFEDPGYIVMATTNGIVKKTPLDDFSNPRRTGIAAITIEEGDELLDARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GDH + +   +   + F  ++I  M R   GV+  +  +G     +          +   
Sbjct: 654 GDHQIILAKSSAYAVRFPENEIRSMGRTAMGVKGITLDEGEKCISMVTTKRTDTALLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVG 750



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 13/211 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              KA +     E     V+ +  G ++              ++A+  +EGD L  A   
Sbjct: 593 EQIKAYINIRNFEDPGYIVMATTNGIVKKTPLDDFSNPRRTGIAAITIEEGDELLDARLT 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLV 616
               +I+L  +   A   P   + S       ++  I L+  +  ++      +   LL 
Sbjct: 653 DGDHQIILAKSSAYAVRFPENEIRSMGRTAMGVKG-ITLDEGEKCISMVTTKRTDTALLA 711

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
           V+  G        +     R  +  + + + EK+  +V +      D + ++  N  +  
Sbjct: 712 VTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVGLIDVNDDDDLIIITTNGIVNR 771

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +  +    R   GVRL     G     + 
Sbjct: 772 QHVSDVRMTGRNTSGVRLIRLMAGDKISALA 802


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/754 (34%), Positives = 411/754 (54%), Gaps = 29/754 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM ++G     ++KKSAR+V
Sbjct: 5   ISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTE RM ++
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMARL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               L  +++  VDFR  Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 125 CSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + L+DNP  ++E ++ ++ GPDFPTGG++    + + ++Y  GRG  ++R    +E
Sbjct: 185 IDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGG-QGLYDAYTTGRGSIKIRGVVEIE 243

Query: 260 EVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E GRG    IV+ EIPY + KS L+EKIA L+  K+I  + D+RDES      ++    R
Sbjct: 244 ETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKR 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ +++  + +ET F +NM    +G+ P ++ L  +L  +L HRREV+ RR+ F
Sbjct: 304 GAIADIIINALYKYTPLETSFGINMMA-VVGKRPMLLNLKSVLDYFLDHRREVVIRRTKF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            +   ++RV IL+GL IA  NIDE++ +IR     D+ K  +++RFSL+E Q  AIL++R
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMARFSLSEIQAKAILDMR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  EL  LL + E   S+LN+     + I  E++E+KE +S       R
Sbjct: 423 LQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVLKSVIRDELKEIKENYSTP-----R 477

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           R+     +    A   + +I  E   V +S RG+I+          +     +S +   +
Sbjct: 478 RSELL--TANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSNYTAQRRGGKGISGVQTGD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
           GD +   +       ++L +  GK + + A  +  G     G  +  L+ L+ ++ I TA
Sbjct: 536 GDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGGHVANLLPLDKDECITTA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +D     L ++ KG                G   + +   +++ +V ++  D   
Sbjct: 596 LSLREFDDDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRAVNLRDGDELMMVREIEPDVDC 655

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +V  +   + F+I+    + R   GV+  + + D  +   +     E    +  +   +
Sbjct: 656 ILVTRDGSAIRFNINDARPLGRTTAGVKGVALRGDDEVVACVVTGDPERDQLLTVSAGGF 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           RGG G L  +   ++GK + +
Sbjct: 716 GKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGA 749



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIA 554
           +        L     + +   + ++ +G I+           S  + A++ ++GD L + 
Sbjct: 587 DKDECITTALSLREFDDDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRAVNLRDGDELMMV 646

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-K 613
                    +L++ DG A      +          ++ +     ++ +      D    +
Sbjct: 647 REIEPDVDCILVTRDGSAIRFNINDARPLGRTTAGVKGVALRGDDEVVACVVTGDPERDQ 706

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           LL VS+ G        +    +R GK  L +    K   VV        D V ++    K
Sbjct: 707 LLTVSAGGFGKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGARMVNESDDVILLTSANK 766

Query: 670 LLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKIC 706
           ++  S+ ++ +   R   GVRL          VI F++ 
Sbjct: 767 IIRMSVSEVSQTRGRATQGVRLVRMDANN--SVIGFELV 803


>gi|333025713|ref|ZP_08453777.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
 gi|332745565|gb|EGJ76006.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071]
          Length = 846

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/769 (31%), Positives = 393/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 62  ARVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 122 MAPLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   + +PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 182 LREVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIP 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 241 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++F  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 300 RLVVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D  +        L    E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  ++  E D L    ++  ++L S ++Q   +  E+ ++ + F 
Sbjct: 419 ANAILEMQLRRLAALERQKLIQEHDELQRRIDEYKAILASPERQRQIVNDELGQIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 479 D-----DRRSQLV---PFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +       T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 531 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 591 PDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDE 650

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S++DG   +++   +
Sbjct: 651 LIGAELVSADDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFRDG--DELLSMNV 708

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 709 VRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 757



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   +    L     E  P  V+ +  G ++      
Sbjct: 567 KAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKD 626

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 627 YDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATD-DTLRPM 685

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V  +   +   +  G A      E     R G   K  
Sbjct: 686 GRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAA 745

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   +++I +  R   GV+L +   G    
Sbjct: 746 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINL--GKRDA 803

Query: 700 VICFK 704
           V+   
Sbjct: 804 VVAVA 808



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F++GD L       T   +   +  G A   P          G  
Sbjct: 682 LRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDEYRVQGRGGLG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +EI    R   G   + +   
Sbjct: 742 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRDTMGVQLINLGKR 801

Query: 648 EKMKLVVK 655
           + +  V +
Sbjct: 802 DAVVAVAR 809


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/756 (34%), Positives = 427/756 (56%), Gaps = 31/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  VS+   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+  G+A+KKSA
Sbjct: 3   VIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY++LVR+AQPF  R PLI GQGNFG+IDGD+AAA RYTEAR+
Sbjct: 63  RIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A + +IDN + ++E +L+++ GPDFPTGG I   +  I+E+Y+ GRG  ++RA+ 
Sbjct: 183 EELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIF-GKSGIIEAYKTGRGSIKIRAKH 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E  G     IV+ E+P+QV K++LIEKI++L+  K +  + ++RDES  +   V+   
Sbjct: 242 HIEHKGN-KEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +    ++++ +++  + M+  F +NM  +   + P++  L  +L  ++ HR+ V+ RR+
Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQ-PKLFNLFELLDIFIKHRKTVVIRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            + ++   +R  IL+GLLIA  NIDE++ II+  +   + K  +++RF LT+ Q  AIL+
Sbjct: 360 IYELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++E   L+ + E ++S+L         I  E+ E+K+ +       
Sbjct: 420 MRLARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTP---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
                   +     A   + +I  E + V I++RG+++                  AL  
Sbjct: 476 ----RLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTI 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++    A++ D +++++  G+ + L    +   S    G+AI  LI+L+ ++ I 
Sbjct: 532 YEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQ 591

Query: 604 TAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--G 658
           T      +D +  L   +  G       SE       G   + +   +++     V    
Sbjct: 592 TIIKTEDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDELVTAKIVEPGD 651

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAG 716
             + +V +    + F +D + EM R  +GV    +K  G   V    +  E    +  + 
Sbjct: 652 KELFIVTKKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQDENQEILTLSE 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +     L  L  RGG G +  K   ++G  + 
Sbjct: 712 KGFGKRTEANLYRLTNRGGKGVIAMKLTNKTGDLVG 747



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 13/220 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +     +  ++    ++       +  G ++              + A+   EGD L  A
Sbjct: 585 DKDEKIQTIIKTEDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAITIDEGDELVTA 644

Query: 555 LHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTC 612
                 D+ L + +  G A   P   +         +  +       ++V A    D   
Sbjct: 645 KIVEPGDKELFIVTKKGMAIRFPVDTVREMGRTARGVTGIRFKIEGDEVVGALALQDENQ 704

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDH-VAVVGENR 668
           ++L +S KG     E +      R GK  + +        +  VV    DH + V+  + 
Sbjct: 705 EILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLTNKTGDLVGVVATEKDHDLMVLTSSG 764

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           K++  SID I +  +  +GVR+    DG     +     E
Sbjct: 765 KMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSE 804


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/847 (31%), Positives = 413/847 (48%), Gaps = 106/847 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++S     +  +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI+GQGNFG+
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE R+ +VA   L  +D+D V+F + Y+  + EP V P+++PNLL NG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +A+I+ PEI++ +L+E I GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIIL-GRAGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R++   EE+  G   I+V+EIPYQV KS +IEKIAEL+  KRI  + D
Sbjct: 240 AAYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    +   PD+++  ++  S ++  F  NM  L+ G  P+ + L  +
Sbjct: 300 IRDESDRQGMRVVIELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALN-GGRPEQLALKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           LK ++A R EV+ RR+ F +     R  +L GL +A  NID++I +IR    P       
Sbjct: 359 LKAFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQL 418

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        F L+E+Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L AE +    +L S ++    +  E+ EV++ F+       RRT   E++        
Sbjct: 479 DKLAAEIKDYLDILKSRERILEIVRTELEEVRDEFATP-----RRT---EITDGGGDLDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G AY +    L     +  G A+  ++ L   + I +               +L
Sbjct: 591 LFFSSRGIAYKMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEETWAELDVL 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFS 674
             + +G     + S+     + GK  +K+   + +  V+     D V +       + F 
Sbjct: 651 FATKRGTIRRNKLSDFAQINKNGKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI-----------------------CEGL 709
              +     R   GVR  +  +G    VI   I                        EG 
Sbjct: 711 TTDVRVFSGRNSVGVRGINLAEG--DHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGA 768

Query: 710 -----------------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                                    +  +   Y +  +        RGG G        R
Sbjct: 769 ESVSFEDAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDR 828

Query: 747 SGKFLSS 753
           +G+ ++S
Sbjct: 829 NGRLVAS 835



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 37/338 (10%)

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV--DAILNL-RLRSLRKLEEYQIKSELDN 453
             N    +    +      + V R  L   Q   +A++N+  L    ++       E + 
Sbjct: 583 VANTHTPVLFFSSRGIAYKMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEE 642

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
             AE + + +       +   I       +   S    + +      ++   D       
Sbjct: 643 TWAELDVLFA------TKRGTIR------RNKLSDFAQINKNGKIAMKLEEGDGIVNVMT 690

Query: 514 MIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             E + + +  S    IR            +SV +  ++  EGD +       T  R   
Sbjct: 691 STEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVGVRGINLAEGDHVIS----MTILRHFD 746

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV-VSSKGNAF 624
             +D +   L     +SG    E++         +        D   ++++ VS  G   
Sbjct: 747 CDSDERTAYLKLSRAMSGEEGAESVSFEDAGMTKERFEAM---DENAEVILTVSENGYGK 803

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
                E     R  KG   + V+      +        D + +V    +L+   +  I  
Sbjct: 804 RTSSYEYRTTGRGGKGIAAMTVNDRNGRLVASFRSEESDEIMLVTNGGQLIRCPVHGIRV 863

Query: 681 MSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAG 716
             R  +GV    +  D  +  V      +    +++ G
Sbjct: 864 AGRSTQGVIVFNTSADEKVVAVERISEADDDENVEAEG 901


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/759 (32%), Positives = 409/759 (53%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++N+ +V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   AKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   L+DNP+++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   V
Sbjct: 185 PHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSIIV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  ++E+  G   I++TE+PY V K++LIE+I+EL   KRI  +  +RDES+     +
Sbjct: 244 RGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R +   +++ +I+ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 VIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F  +  + R  IL+GL IA  +IDEIIAIIR     D  K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIERFDFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LLA    +  +L   ++    I  E+ ++ + F  +
Sbjct: 423 AILDMRLRRLTGLEREKIENEYQELLAFIADLTDILARPERVVQIIKEELLDLGKRFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E I + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEIVITLTNNGYIKRVANTEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++ +
Sbjct: 536 GMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPEYGRTAKGIPVINLLGIDSS 595

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I           +   L   +  G     +          G   + +  ++++  V++
Sbjct: 596 ERIQAIIAVKNHEAAEQYLFFTTKLGVVKRTDVQAFSNIRSNGLIAIGLKEQDELVNVLQ 655

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G D + +       + F+   + +M R   GVR    ++G           E    + 
Sbjct: 656 TKGSDTIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLREGDYVVGTAILTPES-EVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G       P++G    
Sbjct: 715 ITENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAG 753



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 18/200 (9%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E      +  G ++     +        L A+  KE D L   L    +D I++ +  G 
Sbjct: 611 EQYLFFTTKLGVVKRTDVQAFSNIRSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGY 670

Query: 572 AYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           + T     +   R  G A   +  I L     +V   +     ++LV++  G       S
Sbjct: 671 SVTFAESVV---RDMGRAAAGVRGIRLREGDYVVGTAILTPESEVLVITENGYGKRTASS 727

Query: 630 EIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R GK      +   +     L      + + V+ +   ++ F++  + +  R  
Sbjct: 728 EYPVKGRGGKGIKTANITPKNGPLAGLTTVSGEEDILVITDKGVIIRFNVATVSQTGRAT 787

Query: 686 -GVRLQSYKDGGISDVICFK 704
            GVRL   ++   + V+   
Sbjct: 788 LGVRLMKMENE--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 24/216 (11%)

Query: 465 LNSGKQQWNQIACEIREVKEIF------------SKSTDLGRRRTT-FCEVSRADKATLQ 511
           ++S ++    IA +  E  E +            +        R+     +   ++  L 
Sbjct: 592 IDSSERIQAIIAVKNHEAAEQYLFFTTKLGVVKRTDVQAFSNIRSNGLIAIGLKEQDELV 651

Query: 512 QAMIEKEPITVVI-SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             +  K   T++I ++ G+        +R +   +  +  +  +EGD +           
Sbjct: 652 NVLQTKGSDTIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLREGDYVVGTAILTPESE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      +         G+ I+       N  +           +LV++ KG 
Sbjct: 712 VLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAGLTTVSGEEDILVITDKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
                 + +    R   G   +K+ +E K+  +  V
Sbjct: 772 IIRFNVATVSQTGRATLGVRLMKMENEAKVVTMATV 807


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 400/756 (52%), Gaps = 32/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  + +   +++ ++ YA+STI +RA+PD+RDG KPV RRI++A  + GL       KSA
Sbjct: 4   VLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGEV+ K HPHGD ++YD+L RLAQP+ QRYPLI GQGNFG+IDGD  AA RYTEAR+
Sbjct: 64  GIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +L+ +D++ V+F   Y+    +P V P+  PNLL NG++GIAVGMATSIP HN+
Sbjct: 124 SSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +ALID P +S++++++ + GPDFPTG     SR+ I E+Y  GRG  +VRA+ 
Sbjct: 184 SEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGA--RLSRKGIREAYASGRGSLKVRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             E+   G   +V TEIPYQV K+ LI +IA L   K I  +  +RDES      +    
Sbjct: 242 RNED-KNGRAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +P +++  ++  S ++  F +N+  +  G  P+V+ L  +L+ +L HRREV++RR+
Sbjct: 301 KRGANPQVVLNKLYKHSRLQASFTVNLLAIVNGE-PKVLSLPELLRHYLNHRREVVYRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            + +    +R  +L+GLLIA  +IDE+IA+IR   + ++ +  +++RF+L++ Q  AIL+
Sbjct: 360 QYELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIARFALSDIQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +++ E   L      + ++L   K+ W  +  E+ E+K  +  +    
Sbjct: 420 MRLQRLVGLEREKLQEEYRELQETIAYLSAILQDEKRLWGVVKEELLEIKNKYGDA---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
            RRT   E          + +IE EP+ + ++++G+++              V   A   
Sbjct: 476 -RRTQLTEFEE---GFNPEDLIEDEPMVITLTSQGFLKRTPLEAYRAQGRGGVGAQAGKT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   D +L  +  G+ Y      L   S +  G  +  ++ L   +++ 
Sbjct: 532 KEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQARGTHVVSMLPLIEGEEVA 591

Query: 604 T---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD 659
                         +  + +G     E  E    +  G   + +   + +  V +   G+
Sbjct: 592 ALLGVRSLSEAGYFVFATRQGLIKRTEIQEYQNLSSAGLIAINLLENDALIGVGIAQDGE 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL--TWIDSAG 716
            + +     + + F ++ +    R  +GV    +KD G   V    + +G     +    
Sbjct: 652 QIMLATAYGQAIRFDLEDVRATGRASQGVTGIRFKDEGDQVVSLVILPKGYEGEVLAVGT 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + Y +  +     +  RGG G +  K   + GK  +
Sbjct: 712 KGYGKRTSVAEYPVQGRGGQGVITFKTTEKVGKLAA 747



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 14/200 (7%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + +G I+           S  L A++  E D+L     A   ++I+L +  G+A   
Sbjct: 606 VFATRQGLIKRTEIQEYQNLSSAGLIAINLLENDALIGVGIAQDGEQIMLATAYGQAIRF 665

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIA 633
              ++ +     + +  +   +    +V+  +       ++L V +KG       +E   
Sbjct: 666 DLEDVRATGRASQGVTGIRFKDEGDQVVSLVILPKGYEGEVLAVGTKGYGKRTSVAEYPV 725

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVR 688
             R G+  +   + EK   +  +++V GD   +V       +   +  I    R   GV+
Sbjct: 726 QGRGGQGVITFKTTEKVGKLAALMRVAGDEDLLVLSRRGIAIRTKVGSISLYGRPTSGVK 785

Query: 689 LQSY-KDGGISDVICFKICE 707
           + +  +D  +      K  +
Sbjct: 786 IMNLAEDDEVVSAFVIKPQD 805


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 414/759 (54%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN++ V+L   ++E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      
Sbjct: 5   IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ ++++ VDF+  Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   L+DNP+++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   V
Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   +
Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R +   +++ +++ ++ ++T F  NM  +  G VP+++ L  IL+ ++ H++EV+
Sbjct: 304 SIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F     + R  IL+GL IA  +IDEIIAIIR     D+ K  ++ RF  ++ Q  
Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RLR L  LE  +I++E   LL     ++ +L   ++    I  E+ +V+  F  +
Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT          +   + +IE+E + + ++N G+I+          +     + 
Sbjct: 483 -----RRTELLVGEV--LSLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRGVQ 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D +K  +   T D +L  +  GK Y      +        G  +  L+ ++  
Sbjct: 536 GMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLLGIDSA 595

Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + I          ++   L   + KG       +        G   + +  ++++  VV 
Sbjct: 596 EKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELVNVVT 655

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G+   ++G +    + F  + + +M R   GVR    ++     V    + E    + 
Sbjct: 656 TNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYV-VGAAILDENKEVLV 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G        ++G    
Sbjct: 715 ITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753



 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
                +       +   E        + +G ++           S  L A+  KE D L 
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  +   ++++ +  G + T     +   R  G     +  I L  N  +V A + D 
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTV---RDMGRTASGVRGIRLRENDYVVGAAILDE 708

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGE 666
             ++LV++  G     + SE     R GK     +  EK   +  +  V GD  + ++  
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ++ F++D + +  R   GVRL   +DG  + V+   
Sbjct: 769 KGVIIRFNVDSVSQTGRATLGVRLMRMEDG--AKVVTMA 805



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 24/211 (11%)

Query: 465 LNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRA------------DKATL 510
           ++S ++    I+ E +    K +F  +     +RT     S              D   +
Sbjct: 592 IDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKRTAVTAFSNIRSNGLIAISLKEDDELV 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                      ++ ++ G+        +R +   +  +  +  +E D +  A        
Sbjct: 652 NVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRENDYVVGAAILDENKE 711

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++ +G      A         G+ I+       N  +      +    +L++++KG 
Sbjct: 712 VLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITNKGV 771

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +    R   G   +++    K+ 
Sbjct: 772 IIRFNVDSVSQTGRATLGVRLMRMEDGAKVV 802


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++++F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 477 ----GDKRRTELMIGEV-LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I      +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTV-VGASVITNQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750



 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V  +  
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRG-VNLREGDTVVGASVITNQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEV 812



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 83/246 (33%), Gaps = 37/246 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVRGVNLREGDTVVGASVITNQDEVLIITEKGYGKRTLATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK 651
            + K+ 
Sbjct: 794 QDAKIV 799


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/798 (31%), Positives = 414/798 (51%), Gaps = 66/798 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +++ +   ++++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +  
Sbjct: 2   SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDS AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++   +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    +ALIDN E++IE L+ YI  PDFPTG   +   + I+E+Y+ GRG  
Sbjct: 182 IPPHNMTEVINGTIALIDNSELTIEDLIHYIPAPDFPTGS-YINGTDGILEAYKTGRGRV 240

Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RA+  + E+   G   IVVTEIPYQV K++L+EKIAEL+  K++  + ++RDES +D 
Sbjct: 241 IMRAKADIHEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R   P++++ +++  + ++  F +NM  LS    P+++ L  IL++++ HR+
Sbjct: 301 IRVVIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDN-RPKLLNLKEILEQFIKHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
           EV+ RR+ F ++    R  IL+GLL++  NIDE+I +I+    P     S          
Sbjct: 360 EVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSM 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        ++LTE Q +AIL LRL  L  LE+ +I +E 
Sbjct: 420 VKSMLEGVDVKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEF 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+   + +  +L+   +    +  E+ E+++ +              E+  +     +
Sbjct: 480 KELIERIKYLIGILSDVNELIRVVKEELVEIRDNYGDERKS--------EIIESRLDLTR 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S  G++++         K   V  SA   KE DS+   + A T D +
Sbjct: 532 EDLIAEENMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTM 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y     +    S    G  I  ++ L  ++ I        ++    + + +
Sbjct: 592 LCFSSLGRVYWSKVYDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGWYVFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G    V+ SE       GK  + ++  +++  V    G+  + +  +  K + F    
Sbjct: 652 RLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESD 711

Query: 678 IPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +  M R   GV       D  I  ++     EG   + +    Y +          KR  
Sbjct: 712 VRAMGRSAAGVTGMRIHPDQKIVSMLVTNPDEG-VVLAATENGYGKRTAVSEYRKTKRAS 770

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G +      R+GK + +
Sbjct: 771 QGVIAISTSERNGKVVVA 788



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 80/206 (38%), Gaps = 13/206 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A +  +   +     + +  G ++        +  S    A+   +GD L   
Sbjct: 627 EKDERITAMMPISQFNEGWYVFMATRLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  +I++ S  GKA      ++ +       +  +  ++ +Q IV+  V +    +
Sbjct: 687 ALTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAGVTGM-RIHPDQKIVSMLVTNPDEGV 745

Query: 615 LVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRK 669
           ++  +  G       SE     R  +  + +S+ E+    +  V+    + + ++ +N  
Sbjct: 746 VLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVMITDNGT 805

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           L+  S D++ E  R  +GVRL + ++
Sbjct: 806 LVRTSSDEVRECGRSAQGVRLINLRN 831



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 3/135 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R++   +  ++ +       +   L  +  +  +L  + +G             +   +
Sbjct: 712 VRAMGRSAAGVTGMRIHPDQKIVSMLVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQ 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS 646
            +  +     N  +V A + ++   +++++  G        E+    R   G   + + +
Sbjct: 772 GVIAISTSERNGKVVVAVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRN 831

Query: 647 EEKMKLVVKVTGDHV 661
            EK+  +  V  D V
Sbjct: 832 NEKLISLKVVKQDDV 846


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/824 (31%), Positives = 413/824 (50%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V    G + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 AILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 184/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 478 -----NSRRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/776 (29%), Positives = 392/776 (50%), Gaps = 37/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +       +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSA-SSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 121 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSRG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+ P HN+ E+ EA    ++N     E + E ++E + GPDFPT G+IV   + 
Sbjct: 181 IAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIV-GTQG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  +
Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +
Sbjct: 359 DQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + + Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   
Sbjct: 419 AGLIELLDIDDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E++E+ +    +     RRT       AD     + +I +E + V I+  G+ +   
Sbjct: 479 VRDELKEIVDKHGDA-----RRTRIV---PADGQVSDEDLIAREDVVVTITETGYAKRTK 530

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                  K     +     K+ D +       T D IL  +T G+ Y   A  L   S  
Sbjct: 531 TDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y+    L++ +  G     + S+  +N   G   
Sbjct: 591 ARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVA 650

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++   V  +  D + +V  NR+ + FS     +  M R   GV+   + +   
Sbjct: 651 INLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEALRPMGRATSGVQGMRFNEDDR 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +     +    + ++G  Y +  +     +  RGG G L  +   + G  + +
Sbjct: 711 LLSLNVVRPDTYLLVATSG-GYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGA 765



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 14/235 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  K    D +      A++ +EGD L  A
Sbjct: 603 QPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +     D +LL+S + ++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 663 VLCSAEDDLLLVSANRQSIRFSATD-EALRPMGRATSGVQGMRFNEDDRLLSLNVVRPDT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
            LLV +S G A      E     R GK  L +        +   + V  D  +  +    
Sbjct: 722 YLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
            ++  +  Q+ +  R  KGVRL +  +G     I          +D   R  +R 
Sbjct: 782 GVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIARNGRGRGGRVDQRIRRGHRR 836


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/769 (30%), Positives = 398/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+   +I +E L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L  G  P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKG-RPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +          T   + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-- 703
           + +  V    G   + +     + + F    +    R   GV+     D G  +V+    
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMRLDDDGQDEVVGMIS 710

Query: 704 -KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 15/200 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + RG I+        +  +  + A+  ++ D L      +    +++ +  G+A   
Sbjct: 618 LFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRF 677

Query: 576 PAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEII 632
               +  SGR       + +D +   ++V      +     +LVVS KG        +  
Sbjct: 678 HESVVRPSGRTAMGVKGMRLDDDGQDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYR 737

Query: 633 ANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  EK   +  +  VT  + + ++ ++   +   +  +  + R   GV
Sbjct: 738 ITNRGGKGVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGV 797

Query: 688 RLQSY-KDGGISDVICFKIC 706
           +L    K G     +C  + 
Sbjct: 798 KLIDLSKRGDEIASVCSVVS 817


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/790 (33%), Positives = 403/790 (51%), Gaps = 65/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+ GIAVGMAT+IP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA +++ EISIE L+E+I GPDFPT  I +  R  I E+YR GRG   + AR 
Sbjct: 188 TEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYICARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGRVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKEIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           +   ++    R +IL+ L IA  NID II +IR    P                      
Sbjct: 366 TILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLE 425

Query: 417 -----------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                               ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  
Sbjct: 426 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 485

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++  +L S  +    I  E+  V+E F  +     RRT   +++        + +I +E 
Sbjct: 486 ELLHILGSADRLMEVIREELELVREQFGDA-----RRT---DITANSVDINIEDLITQED 537

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V +S+ G+++          +      SA   KE D +   L A+T D IL  S+ G+
Sbjct: 538 VVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGR 597

Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIV 626
            Y +    +        G  I  L+ L  N+    I+    Y+    + + ++ G     
Sbjct: 598 LYWMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVNVFMATASGTVKKT 657

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
              E       G   + ++  +++  V   +G D V +     K++ F  D +  M R  
Sbjct: 658 PADEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMGRTA 717

Query: 685 KGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            GVR       G   V+   +  G    + +    Y +           R   G +  K 
Sbjct: 718 TGVRGIKL--AGEDKVVSLIVPRGEGRILTATENGYRKRTAVAEYPTKSRATQGVISIKV 775

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 776 TERNGSVVGA 785



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++   +          + A++  EGD L   
Sbjct: 625 EANERYTAILPVREYEEGVNVFMATASGTVKKTPADEFSRPRSAGIIAVNLNEGDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D ++L S  GK       ++ +       ++  I L     +V+  V     ++
Sbjct: 685 DLTSGQDEVMLFSAAGKVVRFKEDDVRAMGRTATGVRG-IKLAGEDKVVSLIVPRGEGRI 743

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L  +  G       +E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 744 LTATENGYRKRTAVAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 803

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + ++  + R  +GV L    +      +  V      E L  ID +
Sbjct: 804 VRIRVSEVSIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEELDAIDGS 853


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/787 (31%), Positives = 405/787 (51%), Gaps = 47/787 (5%)

Query: 1   MGVDNIS---NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M   N       +    + V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MADQNTPVTPEESGETVQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DED VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E LL    E I GPDFPTG ++V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           +I  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G VP
Sbjct: 299 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VDIARTGLMDLLEIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E F        R+T        D     + +I +E I V +S  G+
Sbjct: 478 RQRGIVSAELAAIVEKFGD-----DRKTMLV---PYDGDMSIEDLIAEEDIVVTVSRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 VKRTKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 --SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    Y++T  L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYEATPYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATDEALRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G   +++   +    T++  +    Y +  N     +  RGG+G    K    
Sbjct: 710 KGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGSLVGA 774



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 84/277 (30%), Gaps = 37/277 (13%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +   A    L     E  P  V+ +  G ++      
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEATPYLVLATKGGLVKKTPLKD 643

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D ILL+S   ++    A +  + R  
Sbjct: 644 YDSPRSGGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATD-EALRPM 702

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 703 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAA 762

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +  +  ++   +++I E  R   GV+L +   G    
Sbjct: 763 KIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINL--GKRDA 820

Query: 700 VICF----------KICEGLTWIDSAGRSYNRSENDL 726
           V+            +  +G   +D        +  D 
Sbjct: 821 VVGIARNAEAGREAEEVDGDEAVDETAEGAATTGTDE 857


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/822 (31%), Positives = 413/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPT GI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTSGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+  + +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFLENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQSY---------KDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DATETVTAILPLTEFLENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/824 (31%), Positives = 411/824 (49%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V      + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNTEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 87/532 (16%), Positives = 187/532 (35%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
             ++++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITNSSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 478 -----NSRRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/793 (31%), Positives = 411/793 (51%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNS-NTLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  +N  N+ + L  +         V+ V L   ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADENTPNTPDELTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           +   GNFG+   D AAA RYTE +M  +A  +L+ +DE+ VDF+D Y+  + EP V P++
Sbjct: 121 VDSNGNFGSPGNDPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPAR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFP 227
            PNLL NG++GIAVGMAT+IP HN++E+ E A   + NP+ + E+LLE     I GPDFP
Sbjct: 181 IPNLLVNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           TG ++V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA
Sbjct: 241 TGALVV-GRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIA 298

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+   ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L
Sbjct: 299 DLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLAL 358

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             G VP+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+
Sbjct: 359 VDG-VPRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIAL 417

Query: 407 IRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     D  +  ++    + E Q +AIL ++LR L  LE  +I  E D L ++ ++ ++
Sbjct: 418 IRRSDTVDTARGGLMGLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQSKIDEYNA 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S ++Q   I+ E+  + E F        RR+        D     + +I +E I V 
Sbjct: 478 ILASPERQRQIISEELTAIVEKFGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVT 529

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+++          K     +     K+ D +     + T   +L  +  G+ Y  
Sbjct: 530 ITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGRVYRA 589

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
            A  L        G+ +  L+    ++ I        Y++   L++ +  G        +
Sbjct: 590 KAYELPDAGREARGQHVANLLAFQPDEKIARILAIRDYEAVPYLVLATKSGLVKKTPLKD 649

Query: 631 IIANTRKGKTFLKVSS-----EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMS 682
             +    G   + +       E+++     V+  D + ++    + + F+     +  M 
Sbjct: 650 YDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLISRKAQSIRFTATDESLRPMG 709

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R   GV+  S+++    +++   +    T++  +    Y +  N     +  RGG+G   
Sbjct: 710 RATSGVKGMSFRED--DELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKA 767

Query: 741 PKGFPRSGKFLSS 753
            K     G  + +
Sbjct: 768 AKIVEDRGSLVGA 780



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 21/222 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKE-----GD 549
           +        L     E  P  V+ +  G ++       D      + A++ +E      D
Sbjct: 613 QPDEKIARILAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMADGRED 672

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A    + D +LL+S   ++    A +  S R  G A   +  +    + ++++  V
Sbjct: 673 ELIGAELVSSADDLLLISRKAQSIRFTATD-ESLRPMGRATSGVKGMSFREDDELLSMNV 731

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAV 663
                 +   +  G A      E     R G   K    V     +   + V   D +  
Sbjct: 732 VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILA 791

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +  +  ++   ++++ E  R   GV+L +   G    V+   
Sbjct: 792 ITLSGGVIRTRVNEVRETGRDTMGVQLINL--GKRDAVVGIA 831



 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+E D L           +   +  G A              G  
Sbjct: 705 LRPMGRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLG 764

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 765 IKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKR 824

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 825 DAVVGIAR 832


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 477 ----GDKRRTELMIGEV-LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGVVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I      +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTV-VGASVITNQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRYGVVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V  +  
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRG-VNLREGDTVVGASVITNQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEV 812



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRYGVVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVRGVNLREGDTVVGASVITNQDEVLIITEKGYGKRTLATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/822 (30%), Positives = 413/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP ISIE L+E+I GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANNPNISIEGLMEHITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES ++   +   
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + ++  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + + ++    R  IL+GL +A  NID II  I+    P                      
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV+AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN      N I  E+  + + +  +     RRT   E+  +     ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RRT---EIVESGVDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  +  L+ L  N+ I        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQS---------YKDGGISD------------------VICFKICEGLTW 711
            M R  KGVR             +D  + +                  V    + E    
Sbjct: 716 AMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +    Y +          KRGG G +  K   R+G+ +S+
Sbjct: 776 LCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISA 817



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 75/242 (30%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L      +     + +  G ++ +         S  L A+   E D+L   
Sbjct: 629 EANETITAILPLTEFPENHYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--------QLLIDLNHNQ------ 600
                  +I+L S +GKA      ++ +     + +           ID+   +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDS 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L   + G        +     R GK  + +   
Sbjct: 749 DDNDDSSDSNVVSRIVSLVVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    D   +  V+
Sbjct: 809 ERNGELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVV 868

Query: 702 CF 703
             
Sbjct: 869 SI 870


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/760 (31%), Positives = 396/760 (52%), Gaps = 30/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +
Sbjct: 1   MSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 61  KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT+IP
Sbjct: 121 EARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  A   L++NP+++I +L++ + GPDFPTGG+++  +  I ++Y  GRG   V
Sbjct: 181 THNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D   +
Sbjct: 240 RAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+ +V+
Sbjct: 300 VIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKQILQYYLEHQEDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F ++    R+ I++GL IA  +IDEII IIR        K  ++  + L++ Q  
Sbjct: 359 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  +I++E   L         +L   ++    I  E+ E+++ F   
Sbjct: 419 AILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAHKERINQIIYDELMEIQKKF--- 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G +R T  +V         + +IE++ I V +++ G+I+                + 
Sbjct: 476 ---GDKRRTELQVGDI-TNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVK 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +     D ++  + + T D +L  +  GK Y++    +        G  I  L++++  
Sbjct: 532 GMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRSAQGIPIINLLNIDSQ 591

Query: 600 QDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I           D    L   +  G        E       G   + +  ++++  V 
Sbjct: 592 EKISAVINVSHETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLKAINLHDDDELMDVD 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
            +      ++   N   L F+   +  M RG  GVR    +D     +    + +    +
Sbjct: 652 VIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDHDFV-IGAAPLHQDDNVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +        +  RGG+G        ++G  + 
Sbjct: 711 VISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVG 750



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 14/211 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
             +     + +      +  G ++              L A++  + D L          
Sbjct: 598 INVSHETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLKAINLHDDDELMDVDVIEDQQ 657

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G A +  +  + S  G G A    I L  +  ++ A        +LV+S  G
Sbjct: 658 TMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDHDFVIGAAPLHQDDNVLVISENG 716

Query: 622 NAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  +E     R G     V        +  +  V GD  + +V +   ++ F I+ 
Sbjct: 717 FGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVGMTTVAGDEDIMLVTDQGVIIRFGIES 776

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + +  R   GV L    DG  + V      E
Sbjct: 777 VSQTGRSAVGVHLIKMDDG--AKVATMAKVE 805



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D   +   +IE +   ++ +  G+        +RS+   +  +  +  ++ D +  A 
Sbjct: 642 HDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDHDFVIGAA 701

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             H  D +L++S +G     PA         G  ++ +     N  +V          ++
Sbjct: 702 PLHQDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVGMTTVAGDEDIM 761

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           +V+ +G         +    R   G   +K+    K+  + KV  + 
Sbjct: 762 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKED 808


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 399/747 (53%), Gaps = 31/747 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
                + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VG
Sbjct: 81  EFGTEMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVG 140

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD +VYD++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A
Sbjct: 141 EVIGKYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPA 200

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ + +D VD++  Y+E  SEP V P++FPNLL NG+SGIAVGMAT+IP HN+ E  
Sbjct: 201 MELLRDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAV 260

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA ALID+PEI+ ++L++ I GPDFPTG +I+   E I ++Y  GRG   VRA+  +E 
Sbjct: 261 EAACALIDDPEITTDELMQIIPGPDFPTGAVIM-GTEGIHKAYETGRGSITVRAKAHIES 319

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   +V TEIPYQV K  L EKIA+L+  KR+  + D+RDES      ++    + +
Sbjct: 320 TKTGRNRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGV 379

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ +++  + +++ F +N   L     PQ + L  +L  ++AH+ +V+ RR+ F +
Sbjct: 380 IPQVVLNNLYKFTSLQSTFGINNLALV-EGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDL 438

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
           +    R  IL+G LIA  +IDE+I+IIR+ +   +    +  RF  T+ Q  AIL ++LR
Sbjct: 439 KKARARAHILEGYLIALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKLR 498

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I +ELD L    E  + LL   ++    I  E+RE+   F        RRT
Sbjct: 499 RLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDP-----RRT 553

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGD 549
              E+  A+K    + +I  E + V I++ G+++          K     +S ++ KE D
Sbjct: 554 ---EIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDD 610

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
            +     A T + +L  ST GK Y L    L   S +  G AI  L+     + I +   
Sbjct: 611 VIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASVIS 670

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV 663
              +     L+  +  G       S    + R G   + + +++ +  V +V   D + +
Sbjct: 671 TRDFPDDEFLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDALLDVRRVRPQDKIIM 730

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
                K ++F  +Q+    R   GVR    +  G + V+  +I  G           Y +
Sbjct: 731 ATTEGKAIMFEQEQVRATGRDTSGVRGIDLR--GSARVLGMEITNGQGDLFVITENGYGK 788

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSG 748
                      RGG G    +   R G
Sbjct: 789 RTPVRDYPTQHRGGQGVYTIQMTQRKG 815



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 13/216 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
            F E  +       +   + E +    +  G ++     + D S      A++ K  D+L
Sbjct: 658 PFEEGEKIASVISTRDFPDDEFLMFA-TRSGMVKKTVMSAYDRSRRDGIIAINLKTDDAL 716

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    D+I++ +T+GKA       +    G   +    IDL  +  ++   + +  
Sbjct: 717 LDVRRVRPQDKIIMATTEGKAIMFEQEQV-RATGRDTSGVRGIDLRGSARVLGMEITNGQ 775

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGEN 667
             L V++  G        +     R G+    ++++  + M   +K  G    + ++ + 
Sbjct: 776 GDLFVITENGYGKRTPVRDYPTQHRGGQGVYTIQMTQRKGMLAAMKTVGPQHELFIITKG 835

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             ++     +I +  R   GV++ +  DG +   + 
Sbjct: 836 ATVIRVKTGEISQTGRATQGVKMMNVADGDLVIAVA 871


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/837 (31%), Positives = 419/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L+++I GPDFPT GI +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGI-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +        RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGD-----VRRT---EILNASHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y      +   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDE 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 AEDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G  + +
Sbjct: 774 QRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGA 830



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 87/250 (34%), Gaps = 20/250 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--- 521
           L  G++    +  ++  +++      +L     T  E    +   + +   +        
Sbjct: 626 LEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLEGELVEAEEVDEEDGDTPEWVAEP 685

Query: 522 -----VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +     +   ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRNARGVRGM-KLGKGQRIISMLIPESGSQILTASERGFGKRTPLSK 804

Query: 631 IIANTR--KGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  +G   +       + +  +    G+ + ++ +   L+   + ++  +SR  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQ 864

Query: 686 GVRLQSYKDG 695
           GV L      
Sbjct: 865 GVTLIKLAAD 874


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/764 (31%), Positives = 396/764 (51%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  + L   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G     ++ K
Sbjct: 12  DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRSYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYP++ GQGNFG+   D  AA RYTE 
Sbjct: 72  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSRGNDGPAAMRYTEC 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP V PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L+DNPE       E  ++Y+ GPDFPT G IV S + I ++Y  GRG  
Sbjct: 192 NLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGS-QGINDAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    +I  IAE +   ++  +  I DE S    
Sbjct: 251 RMRGVTSIEEEGN-RQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++ H+ 
Sbjct: 310 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRHYVTHQI 368

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D  +  ++   ++ E 
Sbjct: 369 EVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLMELLTVDEI 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  +  E      +L   ++Q   +  E+ E+ + +
Sbjct: 429 QADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILARPERQRAIVRDELAEIVDKY 488

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT       A     ++ +I +E + V I++ G+         +S +    
Sbjct: 489 GD-----DRRTQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 540

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     K+ D ++    + T D IL  +  G+ Y L A  L   S    G+ +  L++ 
Sbjct: 541 GVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 600

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ +++G       S+  +N   G   + ++  +K+   
Sbjct: 601 QPEERIAQVIQIQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLNEGDKLIGA 660

Query: 654 V-KVTGDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
                 D + +V E  + + F+   DQ+  M R   GV+   +K       +     +  
Sbjct: 661 ALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMRFKGDDQLLAMTVVKPDAF 720

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + ++G  Y +  +        RGG G L  K  P+ GK +++
Sbjct: 721 LLVATSG-GYGKRTSLDEYSPQGRGGQGVLTFKYTPKRGKLIAA 763



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +    + +      A++  EGD L  A
Sbjct: 601 QPEERIAQVIQIQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLNEGDKLIGA 660

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G++    A +    R  G A   +  +    +  ++   V     
Sbjct: 661 ALCDNDDDLLLVSEEGQSIRFNAND-DQLRPMGRATAGVKGMRFKGDDQLLAMTVVKPDA 719

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENR 668
            LLV +S G        E     R G+  L         + +  VV    D +  +    
Sbjct: 720 FLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYTPKRGKLIAAVVVDEDDEILAITSAG 779

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            ++   ++QI   SR   GVRL + +DG     I
Sbjct: 780 GVIRTVVNQIRPSSRATMGVRLVNLEDGVELLAI 813


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 407/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKT 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +    +      RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEAIEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E  E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEAIEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEAIEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/754 (35%), Positives = 440/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E +   KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGD-----DRRSPLVERAE-AKAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++   + V  +  D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +                  + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/754 (35%), Positives = 440/754 (58%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + PS+ P++L NG +GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L++NP+  ++++++++ GPD+PT   I+     I + YR GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D + LM  +F  +D+E  + +N+N++ + + PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  +  R+ IL+GLL AYLNIDE+I IIR ED PK  +++RF L+E
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI    E 
Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E +   KA  ++ +I  E ITVV+S++GWIR  K H VD + L++
Sbjct: 477 FGD-----DRRSPLVERAE-AKAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + + ++G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + +++++  + GK  L +    ++   + V  +  D + 
Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +                  + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/778 (30%), Positives = 408/778 (52%), Gaps = 37/778 (4%)

Query: 1   MGVDNISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  ++ N +   + +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MADETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG
Sbjct: 61  GMLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDS AA RYTEAR+ ++AE +L  +++D +D++  +++   EP V P+K PNLL NG
Sbjct: 121 SIDGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT++  HN+ E+ +  +A IDN +I++ +L+++I  PDFPTGG+ +     +
Sbjct: 181 ASGIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGV-IYGYAGV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            +++  GRG   +RA+  +E        I+VTEIPYQV K+ +I++ A+L+  K+I  + 
Sbjct: 240 QDAFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            IRDES  D   +++   R  +  +++ ++F  + ++T F +N   L     P ++ L  
Sbjct: 300 AIRDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALV-HGRPMLLNLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-- 417
           ++  ++ HR EV+ RR+ F +   ++R  IL+GLLIA  ++DE+I +IR+ + P+     
Sbjct: 359 MIHHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVG 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            + +F L++ Q  AIL++ LR L  LE  +IK E   L+   E + S+L     +   I 
Sbjct: 419 LMEKFGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEGLRMKIIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVKE F        RR+     +        +  I+ E I + IS+ G+++     
Sbjct: 479 DELLEVKEKFGDE-----RRSQIVHSAE---DMRMEDFIDDEEIVITISHEGYVKRTPLT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                            KE D  +  + A   + +L  +  G+ + L A  +  G     
Sbjct: 531 EYRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTSR 590

Query: 587 GEAIQLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           G AIQ +I++   + I             Y     +++ +  G                G
Sbjct: 591 GRAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGTIKKTSLEAYSRPRANG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KD 694
              + ++  +++       G+  + +  ++ + + F+   +  M R   GVR  +    D
Sbjct: 651 INAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPMGRTATGVRGVTLAGPD 710

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +I     +  T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 711 DEVVGMISVNTND-ATILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTEKTGLLVA 767



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 80/212 (37%), Gaps = 12/212 (5%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ +  G I+     +        ++A++  EGD L  A   +    I++    G
Sbjct: 622 ENNFIIMCTKGGTIKKTSLEAYSRPRANGINAININEGDQLLEACLTNGNSEIVMALKSG 681

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +     + ++V     + +   +LVVS KG     +  
Sbjct: 682 RAIRFNESTVRPMGRTATGVRGVTLAGPDDEVVGMISVNTNDATILVVSEKGYGKRTDID 741

Query: 630 EIIANTRKGKTF--LKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    L V+ +  + + +K     D + ++  +  ++  ++ Q+  M R  
Sbjct: 742 DYRVTNRGGKGVKTLNVTEKTGLLVAIKDVTDNDDLMIINRSGIVIRIAVSQLRVMGRAT 801

Query: 686 -GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            GVRL + K+      I     + +  +D   
Sbjct: 802 QGVRLINLKENDQIASITKVDHDEVEGLDVTE 833


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/764 (31%), Positives = 400/764 (52%), Gaps = 30/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N L    +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 3   ENDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+IDGDS AA
Sbjct: 63  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M+++A  +L+ ++++ VDF+D Y+  + EP V P++FPNLL NG SGIAVGMA
Sbjct: 123 MRYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+  A   L+DNP+ + E L++ + GPDFPTGG+++  +  I ++Y  GRG
Sbjct: 183 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVM-GKSGIRKAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   IVV EIPY V K++LIE+IA+L   K I  + D+ DE+  +
Sbjct: 242 TIVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDRE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+
Sbjct: 302 GMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKEILQYYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
             V+ RR+ F ++  + R  I+ GL IA  +IDEII IIRN       K  ++  + L++
Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYGLSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I++E   L+A       +L   ++    I  E+ E+++ 
Sbjct: 421 RQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDILAHQERINQIIYDELLEIQKK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F      G +R T  +V        +  +  +E I V +++ G+I+              
Sbjct: 481 F------GDKRRTELQVGDITNIEDEDLIE-EESIIVTLTHNGYIKRLPVDEFKSQHRGG 533

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +   + D ++  + + T D +L  +  GK Y++    +        G  I  L+ 
Sbjct: 534 RGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQGIPIINLLG 593

Query: 596 LNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +++ + I           D    L   + +G       +E       G   + +   +++
Sbjct: 594 IDNKEKISAVINVSHETNDDDKFLFFTTKQGTVKRTPVTEFKNIRSNGLKAINLHDNDEL 653

Query: 651 KLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V  V      ++G  +   L F+   +  M R   GVR    +D     +    + + 
Sbjct: 654 IHVDIVKDQQNMIIGTHHGYALSFNSSVVRSMGRSAAGVRGIRLRDDDYV-IGTAPLDDD 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +   Y +        +  RGG+G        ++G  + 
Sbjct: 713 SNVLVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKNGPLVG 756



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 12/206 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
             +     + +      + +G ++              L A++  + D L          
Sbjct: 604 INVSHETNDDDKFLFFTTKQGTVKRTPVTEFKNIRSNGLKAINLHDNDELIHVDIVKDQQ 663

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ +  G A +  +  + S       ++  I L  +  ++     D    +LV+S  G
Sbjct: 664 NMIIGTHHGYALSFNSSVVRSMGRSAAGVRG-IRLRDDDYVIGTAPLDDDSNVLVISELG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  SE     R G     V        +  +  V GD  + +V ++  ++ F ++ 
Sbjct: 723 YGKQTPASEYPIKGRGGLGVKTVNVTKKNGPLVGLTTVKGDEDIMLVTDHGVIIRFGVET 782

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVIC 702
           + +  R   GV L    +G     I 
Sbjct: 783 VSQTGRSALGVHLIKMDNGTHVATIA 808



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 79/248 (31%), Gaps = 28/248 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTD 491
           ++ S++  E  +       +      +  + ++ ++    I        + K +F  +  
Sbjct: 567 KVYSMKGYEIPEYGRSAQGIP--IINLLGI-DNKEKISAVINVSHETNDDDKFLFFTTKQ 623

Query: 492 LGRRRTTFCEVS------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
              +RT   E                +   +   +++ +   ++ ++ G+        +R
Sbjct: 624 GTVKRTPVTEFKNIRSNGLKAINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVR 683

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           S+   +  +  +  ++ D +           +L++S  G     PA         G  ++
Sbjct: 684 SMGRSAAGVRGIRLRDDDYVIGTAPLDDDSNVLVISELGYGKQTPASEYPIKGRGGLGVK 743

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
            +     N  +V          +++V+  G         +    R   G   +K+ +   
Sbjct: 744 TVNVTKKNGPLVGLTTVKGDEDIMLVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTH 803

Query: 650 MKLVVKVT 657
           +  + KV 
Sbjct: 804 VATIAKVE 811


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/822 (31%), Positives = 412/822 (50%), Gaps = 95/822 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NIDEII  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    S + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+ +V + +        RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDG-----RRTEIIESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K  D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  I  L+ L+ N+ +        +     + + ++ 
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFLENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V+  +       G   ++++ E+ +  V    G+  + +     K + F+   + 
Sbjct: 656 GTVKRVDLEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQS--------------YKDGGISD-------------VICFKICEGLTW 711
            M R  KGVR                  ++    D             V    + E    
Sbjct: 716 SMGRTAKGVRGMRVSIASNTLSEEDAEIENDESDDNEDSAELSVVSRIVSLVVVPETGEV 775

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 LCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 817



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 39/243 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++ +            L A+   E D+L   
Sbjct: 629 DANETVTAILPLTEFLENHYVFMATASGTVKRVDLEQFSNIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-------------IDLNHNQ- 600
                  +I+L S +GKA      ++ S     + ++ +              ++ +++ 
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRSMGRTAKGVRGMRVSIASNTLSEEDAEIENDES 748

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 749 DDNEDSAELSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 808

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 809 ERNGELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 868

Query: 702 CFK 704
             +
Sbjct: 869 SIE 871


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/753 (37%), Positives = 451/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +N + V+LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDNSERVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  V++   ++    EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG
Sbjct: 182 TDIPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       IV++ +P+Q   ++++E+IA  + +K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ + R P V  L  IL EWL+
Sbjct: 297 NPTRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDLREILTEWLS 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RRE + RR ++R++ + +R+ IL+GLLIA+LNIDE+I +IR ED+PKPV+V+RF L+E 
Sbjct: 357 YRRETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPVLVARFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI       
Sbjct: 417 QAEAILELKLRQLARLEEMKIRGEQDELAQERDRLQALLASERKLATLIKKEII------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + + + G  R +        KA  +   +  EP+T+V+S  GW+RS K H +D S L++K
Sbjct: 471 ADAQNYGDARRSPLHQRAEAKAMSEHDFVPSEPVTIVLSESGWVRSAKGHDIDPSGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   S+++A  R GK  L +    K+   + + GD   +  +
Sbjct: 591 MAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
            +  ++L+F +  +P++S+GKG ++ S         +  +  ++       LT +    R
Sbjct: 651 TQAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTTLT-LHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+ +P+G  R  + 
Sbjct: 710 KLVMKPQDLQKFRAERGRKGTQLPRGLQRVERV 742


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/762 (31%), Positives = 418/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P+K P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA ++N +I I++L+++I  PDFPTGGI +   E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGI-IYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+V+EIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKG-RPQMLNLKDLIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ K  ++ RF L++ Q  AI
Sbjct: 362 RTKFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIERFKLSDIQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + L+   E + +LL     +   I  E+ +++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRTALIKEELEDMRAKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I+              V   + 
Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLNEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    A     ++  +  GK Y +    +  G     G A+Q LI++  +  
Sbjct: 534 GTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTAKGRALQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  L++V+ KG        +       G   + +   +++   
Sbjct: 594 VKAFICTQDLKDKDYTTSHNLIMVTKKGMVKKTSLDKYSKPRVNGVAAITIKEGDELLSA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
               G+  + +  ++ KLL F   +   M R   GVR    KD     +    + +    
Sbjct: 654 QLTDGNSQIIIAVKSGKLLRFEETKTRPMGRTASGVRGIRLKDESDEVIGLVSVNDMNSE 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  A   Y +  +     +  RGG G        ++G+ +S
Sbjct: 714 ILVVAENGYGKRSSLDEYRITNRGGKGVKTLNITEKTGQLIS 755



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 14/210 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++++ +G ++              ++A+  KEGD L  A       +I++    GK    
Sbjct: 615 IMVTKKGMVKKTSLDKYSKPRVNGVAAITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRF 674

Query: 576 PAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                   GR       + +    ++ I    V D   ++LVV+  G        E    
Sbjct: 675 EETKTRPMGRTASGVRGIRLKDESDEVIGLVSVNDMNSEILVVAENGYGKRSSLDEYRIT 734

Query: 635 TRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R GK    ++  EK   +  +  VT  D + ++ ++   +  +++ +  M R   GV+L
Sbjct: 735 NRGGKGVKTLNITEKTGQLISINTVTDADDLMIINKSGLTIRMAVEDLRVMGRATQGVKL 794

Query: 690 QSYKDGGISDVI--CFKICEGLTWIDSAGR 717
            + K       +    K       +D  G 
Sbjct: 795 INLKGKDSIAAVTKVMKDDVEEILLDEDGN 824


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 404/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   +         + +IE+  + + +SN+G+I+          K     +
Sbjct: 477 ----GDKRRTELMIGEV-LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYSVRFNQSAVRGMSRIATGVRGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAG 750



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G +       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMSRIATGVRG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I         E    
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEV 812



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRYGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVRGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTLATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/793 (31%), Positives = 411/793 (51%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+   +   +KK
Sbjct: 6   KEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  A +D+ EI+IE L+++I GPDFPT GI +  R  I+E+YR GRG  R+RA
Sbjct: 186 NLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGI-INGRAGIIEAYRTGRGRIRIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE +   G   I+VTEIPYQ+ K+RLIE+IAEL+  K I  + ++RDES +++RIV+
Sbjct: 245 RATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKNIRIVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + D+++ +++  + ME+ F +NM  L  G+ P+++ L G+++ ++ HR+EV+ 
Sbjct: 305 -EVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQ-PRLLNLRGVIEAFVRHRQEVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ + ++    R  IL+GL +A  NID +I +I++                        
Sbjct: 363 RRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIAM 422

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + L++ Q   IL +RL  L  LE  ++  E    L
Sbjct: 423 LERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEKL 482

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
               ++ ++L S ++    I  E+  ++E F+ +           E+  +      + +I
Sbjct: 483 EIIRELLAILASRERLMQVIRDELTAIREGFADARK--------TEIVASQLDINDEDLI 534

Query: 516 EKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +SN G+ ++                +A   KE D ++  L   T D IL  +
Sbjct: 535 PEETVVVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFT 594

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622
           + GK + L    +     +  G  I  L+ L  N+ I        YD    + + +S G 
Sbjct: 595 SAGKVFWLKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYDGDRFVFMATSNGT 654

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
              V   E      +G   L++    ++  V    G   + ++    K + F  +++  M
Sbjct: 655 VKKVALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAM 714

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            R  +GVR  +  +      +     +    + +    + +           RGG G + 
Sbjct: 715 GRTARGVRGMNLPEDAAVIALIVPDPD-AQILTACENGFGKRTLVSEFPTKGRGGKGMIA 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+GK + +
Sbjct: 774 IRTSERNGKLMGA 786



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/518 (16%), Positives = 173/518 (33%), Gaps = 53/518 (10%)

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E   R    +V     Y+++K+R    I E   +    I  + ++   SA      
Sbjct: 347 RGVIEAFVRHRQEVVTRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAE 406

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +   P  ++  +    +     P  +      R       D   +E L  R   L
Sbjct: 407 ERLLAQGWQPGNVIAMLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRL 466

Query: 373 FRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
               + ++ Q    ++EI++ LL    + + ++ +IR+E        +    TE      
Sbjct: 467 TGLETEKLIQEYQEKLEIIRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQ- 525

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK----QQWNQIACE--------- 478
           L++    L   EE  + +  ++  A+ + +D      +    +   Q+  E         
Sbjct: 526 LDINDEDLIP-EETVVVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVV 584

Query: 479 -----------------IREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEKEP 519
                            ++  +   +     GR       +   +K  A L     + + 
Sbjct: 585 STHDTILCFTSAGKVFWLKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYDGDR 644

Query: 520 ITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
              + ++ G ++ +      +  S  L AL  +E + L           I+LLS++GKA 
Sbjct: 645 FVFMATSNGTVKKVALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAV 704

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 + +       ++ + +L  +  ++   V D   ++L     G       SE   
Sbjct: 705 RFDENEVRAMGRTARGVRGM-NLPEDAAVIALIVPDPDAQILTACENGFGKRTLVSEFPT 763

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R GK  + + + E+    M  V    G+ V ++ +   ++    D++  M R  +GV 
Sbjct: 764 KGRGGKGMIAIRTSERNGKLMGAVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVT 823

Query: 689 LQSYKDG----GISDVICFKICEGLTWIDSAGRSYNRS 722
           L    +G    GI  V             S  +    +
Sbjct: 824 LIRLNEGERLVGIEQVEEVSDAAVEEAKASGAKKLRAT 861


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/753 (37%), Positives = 451/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +N + V+L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL+DNP+ S++ LL +I GPDFPT   I+  R+ I + YR GRG
Sbjct: 182 TDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       IV++ +P+Q   ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D LM  +F  +D+E  + +NMN++ + R P V  L  IL EWL+
Sbjct: 297 NPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLS 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RRE + RR ++R++ + +R+ IL GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ 
Sbjct: 357 YRRETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I+ E D L  E++++ +LL S ++    I  EI    E +
Sbjct: 417 QAEAILELKLRHLARLEEVKIRGEQDELAQERDRLQTLLASERKLGTLIKKEIMADAETY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E S   +A  +   +  EP+T+V+S  GW+RS K H +D S L++K
Sbjct: 477 GDA-----RRSPLQERSE-ARAMSEHDFVPNEPVTIVLSEGGWVRSAKGHDIDPSGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   S+++A  R GK  L +     +   +++ GD   +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENANVLTPLEINGDDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
            E  ++L+F +  +P++S+GKG ++ S         +  +  ++       LT +    R
Sbjct: 651 TEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHIGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLVMKPQDLQKFRAERGRKGTLLPRGLQRIERV 742


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/763 (32%), Positives = 397/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+  +L  + ++ VDF   ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E  +E++LE I GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATIL-GKMGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEK+AEL   K+I  + D+RDES    
Sbjct: 246 IRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R ++ ++++  +   + ++  F + M  L     P+V+ L  +LK +L H++
Sbjct: 306 MRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNE-PRVLNLMQMLKLYLEHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN       K  ++ RF L++ 
Sbjct: 365 EVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + + +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAILADEKKLLGVIREEIMLISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I  E   V ++  G+I+               
Sbjct: 485 GD-----DRRTSIG---FDEFDMSMEDLIPDENTIVAMTKLGYIKRMSVDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++  +       I+  +  G+ Y L    +   S    G AI  L+ L
Sbjct: 537 GIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        YD    L + +  G        E     + G   + +  ++++  V
Sbjct: 597 LPGESITAIIPMKEYDDDKFLFMATKNGMVKKTPMMEYANVRKNGLQAIVLREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLT 710
                   + ++ +  + + F+   +    R   GV      D    +V+  +   +G  
Sbjct: 657 KATDNSKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGMKLNDD--DEVVGMQMDTQGEK 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +          KRGG G L  K   ++GK + +
Sbjct: 715 LLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITEKTGKIVGA 757



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 78/238 (32%), Gaps = 18/238 (7%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + ++        R T            +  A +     + +    + +  G ++      
Sbjct: 574 KTYAIPEGSRTARGTAIINLLQLLPGESITAIIPMKEYDDDKFLFMATKNGMVKKTPMME 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +E D L        +  I L++  G+       ++         + 
Sbjct: 634 YANVRKNGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRVTGRVSMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE-E 648
            +  LN + ++V   +     KLL+VS  G        E     R GK  L  K++ +  
Sbjct: 694 GM-KLNDDDEVVGMQMDTQGEKLLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITEKTG 752

Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           K+     V  DH + ++     ++  S++ I  + R   GV+L +        V    
Sbjct: 753 KIVGAKLVHDDHDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIA 810


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 415/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ID+ +I+IE L+++I  PDFPTGGI +   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGI-IYGYDGVKEAFETGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CIVVTEIPYQV K+ +I+K  +LI  K+I  +  IRDES      +++
Sbjct: 244 KATFEEV-QGRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  S +++ F +N   L  G  P+++ L  ++  ++ HR +V+ R
Sbjct: 303 VLKRDAIPNIVLNMLYKYSALQSSFSVNNIALV-GGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS + ++  + R  IL+GL+IA  NIDE+IAIIR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKRFELSEVQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + +LA  E +  +L   +++   I  E+REV++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDILAREERRMEIIKDELREVRDKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 479 --DRRS---EINYAGGDLSIEDMIPDEQVVITISHAGYIKRTPLTEYKTQHRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  G+ Y L    +   S    G AIQ LI++  +  
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSRTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +     + G   + +   +++   
Sbjct: 594 VKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPRQNGIIAIGIREGDELLEA 653

Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG     +G ++ K + F   +   M R   GVR  +  D     +    + +    
Sbjct: 654 RLTTGSSQIFLGLKSGKAIRFEESKTRPMGRSASGVRGITLADDNDEVIGMVSVHDFDED 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISKKTGGLVA 755



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 19/235 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       + + DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSRTSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 + A+  +EGD L  A     + +I L    GKA           GR       +
Sbjct: 633 RPRQNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPMGRSASGVRGI 692

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEK 649
            +  ++++ I    V+D    +LVVS  G        +     R GK    +        
Sbjct: 693 TLADDNDEVIGMVSVHDFDEDILVVSENGYGKRSSLDDYRITNRGGKGVKTISISKKTGG 752

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  +  V+  D + ++ ++   +  S++ +  M R   GVRL + KD      + 
Sbjct: 753 LVAIKNVSDSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVA 807


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/753 (36%), Positives = 445/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LID+P  S+++LL+ + GPD+PT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+++ +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLGSERKLNTLLKKELQADSDAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GDE-----RRSPLREREE-AKAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   ++ + + G++Y L    L S RG GE +   +       +    
Sbjct: 531 AGDSFLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           + D T KLL+ S  G  F+   S++++  R GK  L + S  ++   + +    D +  +
Sbjct: 591 MADDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++     E    +    R
Sbjct: 651 TAAGRMLMFPVGDLPQLSKGKGNKIISIPSAEAASGEDKLAWLLLLT-PENAITLYVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +   RG  G+L+P+G  R  + 
Sbjct: 710 KLTLKAADLQKFRADRGRRGTLLPRGLQRIDRV 742


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/759 (33%), Positives = 423/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +++GL +   +K
Sbjct: 5   KNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VD +D Y+    EP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG   +R
Sbjct: 185 HNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLL-GRSGIVKAYTTGRGSVIMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E++  G   I++TEIPYQV K++L+EKIAEL   K+I  + D+RDES      ++
Sbjct: 244 GKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ ++++ +++ L+ ++  F +NM  L  G VP+++ L  +L  +L H++EV+ 
Sbjct: 304 IELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDG-VPKLLNLKEVLYYYLEHQKEVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  NID II++IR     ++ K  +++ FSL+E Q  A
Sbjct: 363 RRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINEFSLSEIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+   E ++ +L   ++    +  E+ EVKE F    
Sbjct: 423 ILDMRLQRLTGLERDKIEEEYKKLMELIEDLEDILAKPERVLEIVKEELLEVKEKFGDK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E          + +IEKE I + +S+  +I+                ++ 
Sbjct: 482 ----RRSVIIE--GQVDQIENEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRGVNG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   + D++   L   T D IL  +  GK YTL    +  +S +  G  I  L+++   +
Sbjct: 536 MTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEE 595

Query: 601 DIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            + +        +    L+  +  G     +  +  +  +KGK  LK+   + +  V ++
Sbjct: 596 KVNSIIAISDLQEEGTSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSLIDVQRI 655

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWID 713
           T +  + +V  N + +  + +++ +M R  +GV+  +        VI  + + E    + 
Sbjct: 656 TDEQDIMIVTANGQAIRINAEKVRQMGRVSRGVKGITLSPDDY--VIGMEVVDESKKILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +        +  RGG G  V K   ++GK ++
Sbjct: 714 VTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 12/223 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +  + +       + E+    +  +  G ++  K             AL   EGDSL
Sbjct: 590 EIEKEEKVNSIIAISDLQEEGTSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++++ +G+A  + A  +         ++  I L+ +  ++   V D +
Sbjct: 650 IDVQRITDEQDIMIVTANGQAIRINAEKVRQMGRVSRGVKG-ITLSPDDYVIGMEVVDES 708

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
            K+L V+  G   I + +E     R GK            K+  V  V+G + + ++ + 
Sbjct: 709 KKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSVSGNEDLMIMTDQ 768

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             ++   +  I  + R   GV++ +  D      +     E +
Sbjct: 769 GIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEI 811



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 83/251 (33%), Gaps = 27/251 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREV----------- 482
           ++ +L+  E  Q+  +   +      +  +    ++  + I   +++E            
Sbjct: 564 KVYTLKGYEINQMSRQSKGIP--IINLLEI-EKEEKVNSIIAISDLQEEGTSLMFSTRFG 620

Query: 483 ---KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------S 532
              K        + ++     ++   D     Q + +++ I +V +N   IR        
Sbjct: 621 IVKKSKLGDYASILKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQ 680

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   S  +  +     D +        + +IL ++ +G      +         G+ +++
Sbjct: 681 MGRVSRGVKGITLSPDDYVIGMEVVDESKKILTVTENGIGKISKSTEFNVINRGGKGVKV 740

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKM 650
                    IV          L++++ +G    ++ S I     T  G   + +  ++K+
Sbjct: 741 AKVTKKTGKIVAVKSVSGNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKV 800

Query: 651 KLVVKVTGDHV 661
             V     + +
Sbjct: 801 ATVTLAAKEEI 811


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/759 (33%), Positives = 420/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+   ++   +E  +L Y++S I  RA+PD+RDG KPVHRRI++A +E+GL     ++
Sbjct: 5   KNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDKPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+ K HPHGD + Y ++VRLAQ F  RYP++ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D VD ++ Y+    EP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +AL DN EI+I +L+  I GPDFPTG  ++  R  IV++Y  GRG   +R
Sbjct: 185 HNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLL-GRSGIVKAYTTGRGSIIMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E++  G   IV+TEIPYQV K++L+EKIAEL   K+I  + D+RDES      ++
Sbjct: 244 GKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ ++++ +++ L+ +++ F +NM  L  G VP+++ L   L  +L H++EV+ 
Sbjct: 304 IELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEALYHYLEHQKEVVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  IL+GL IA  NID II++IR     ++ K  ++ +FSLT+ Q  A
Sbjct: 363 RRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQFSLTDVQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   L+     ++ +L   ++    +  E+ E+K+ +    
Sbjct: 423 ILDMRLQRLTGLERDKIEEEYKKLMELIADLEDILAKPERVIEIVKEELLEIKDKYGDK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E          + +IEKE I + +S+  +I+                ++ 
Sbjct: 482 ----RRSVIIE--GQIDQIDNEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGGRGVNG 535

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   + D++   L   T D IL  +  GK YTL    +  +S +  G  I  L+++   +
Sbjct: 536 MTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLEIEKEE 595

Query: 601 DIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            + +        +    L+  +  G     +  +  +  +KGK  LK+   + +  V ++
Sbjct: 596 KVNSIIAISDLQEEDTSLIFSTKFGIIKKSKLGDYASILKKGKIALKLDDGDSLIDVQRI 655

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWID 713
           T D  + +V  N + +  +  ++ +M R  +GV+  +   D  +  +    + E    + 
Sbjct: 656 TDDQDIMIVTANGQAIRINAKKVRQMGRVSRGVKGITLSPDDYVVGMEV--VDESKKILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +        +  RGG G  V K   ++GK ++
Sbjct: 714 VTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 12/221 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +  + +       + E++   +  +  G I+  K             AL   +GDSL
Sbjct: 590 EIEKEEKVNSIIAISDLQEEDTSLIFSTKFGIIKKSKLGDYASILKKGKIALKLDDGDSL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                      I++++ +G+A  + A  +         ++  I L+ +  +V   V D +
Sbjct: 650 IDVQRITDDQDIMIVTANGQAIRINAKKVRQMGRVSRGVKG-ITLSPDDYVVGMEVVDES 708

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTG-DHVAVVGEN 667
            K+L V+  G   I + +E     R GK            K+  V  +TG + + ++ + 
Sbjct: 709 KKILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSITGNEDLMIMTDQ 768

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++   I  I  + R   GV++ +  D      +     E
Sbjct: 769 GIIIRIDISTISTLGRTATGVKVINLVDDQKVATVTLAEKE 809


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 399/768 (51%), Gaps = 36/768 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++  V +N++ V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+    
Sbjct: 3   TDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNNGP 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               +K ARIVG+ +GK HPHGD S+Y ++V +AQ +  RY L+ G GNFG++DGD AAA
Sbjct: 63  DKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+++++  ++  +++D VDF   +++ + EP V P++FPNLL NG SGIAVGMA
Sbjct: 123 MRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEAA-----LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           T+IP+HN+ E+  A        + ++ +  ++++++ + GPDFPTGG I+ +R  I E+Y
Sbjct: 183 TNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTR-GIEEAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  RVR    +E +  G   I++TE+PY V K+RLIEKIAEL+  K+I  +  I D
Sbjct: 242 RTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGISD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S+ +   ++    R  + ++++  ++  + ++  F + M  L   + P+V+ L  IL+ 
Sbjct: 302 HSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQ-PKVLNLLQILEY 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           +L H+ EV+ RR+ + +     R  IL+GLL A   IDE+I  IR     ++ K  ++++
Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  TE Q  AI+++RLR+L  LE  +++ E D L  + ++  ++L   K     I  EI+
Sbjct: 421 FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDELQKKIKEYQAILADRKVLLGVIRDEIQ 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            + + F      G  R T       D     + +I  +   + +S+ G+I+         
Sbjct: 481 IISDKF------GDERRTRIGHDVYD--ITTEDLIPNDNNVLTMSHLGYIKRMSPENFHA 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
                  +      E D ++      + D I+  +  G+AYTL A  +   S    G AI
Sbjct: 533 QNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYTLKAYEIPEASRTARGTAI 592

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L   + I        +     L + + KG              + G   + +  +
Sbjct: 593 INLLQLMPGEKITAIIPVSEFKENQYLFMATKKGMVKKTPVPAFRNMRKSGLAAITLRDD 652

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           + +  V    G   V +   N   + F+   +    RG  GVR       G  +VI  ++
Sbjct: 653 DDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRATGRGSMGVRGIWL--DGEDEVIGMQL 710

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +G   + S+     +        + KRGG G L  K   R+GK + 
Sbjct: 711 QAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNERTGKLVG 758



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 80/259 (30%), Gaps = 22/259 (8%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           + +         R T               A +  +  ++     + + +G ++      
Sbjct: 576 KAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFKENQYLFMATKKGMVKKTPVPA 635

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  ++ D L    +      + L + +G +      ++    G G    
Sbjct: 636 FRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDV-RATGRGSMGV 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
             I L+   +++   +      LL  S  G        E     R GK  L     E+  
Sbjct: 695 RGIWLDGEDEVIGMQLQAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNERTG 754

Query: 650 -MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +  V  V   D + ++  +  ++  S+D +  + R   GV+L       +  V      
Sbjct: 755 KLVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLM----DVMDSVASIAKV 810

Query: 707 EGLTWIDSAGRSYNRSEND 725
                 +    S  R+E D
Sbjct: 811 RKDDSDEGEEDSDTRTEKD 829


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/801 (32%), Positives = 411/801 (51%), Gaps = 64/801 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +   +   V  V++   L++ Y+ YA+S I  RA+PD+RDG KPVHRR++ AM+E+ 
Sbjct: 1   MAETPKEIAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGDS
Sbjct: 61  NDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++A  +L  +D++ VDF D Y+  +  PVV P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN++E+    LA IDNPEI ++ L+EYI GPDFPTG I +  R  IV++YR 
Sbjct: 181 GMATNIPPHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAI-INGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   VRAR   + +  RG   I++ EIPYQ+ K+RLIE+IAEL+  K++  + ++RDE
Sbjct: 240 GRGRIYVRARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    D+++ +++  + +++   +NM  L  G+ P+ + L  +++ +
Sbjct: 300 SDKDGLRVVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQ-PRTLNLLEMIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416
           + HRREV+ RR+ + ++    R  +L+GL IA +NIDEII +I+    P           
Sbjct: 359 VRHRREVVTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKP 418

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                          S + L+  Q  AIL LRL  L  LE  ++
Sbjct: 419 WQSGEVTGMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKL 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  + L E      +L    +    I  E++E+ E F              E++ +  
Sbjct: 479 LQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDD--------RLTEITDSTH 530

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E   V IS+ G+ ++         +      SA   K+ D ++  L A T
Sbjct: 531 DLSVEDLITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIAST 590

Query: 560 TDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
              IL  S  GK Y L   ++   S    G  +  L+ L+  + I +      Y+    +
Sbjct: 591 HATILCFSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYEEGHFI 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            + +++G     +  +       G   L++ +++ +       G   V ++    K + F
Sbjct: 651 FMATARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRF 710

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
               +  M R  +GVR     D      +     +  T +  + + Y +  +        
Sbjct: 711 QEQAVRAMGRTARGVRGIKLGDEHRLISLIVPQADS-TILTVSEKGYGKRTDTEEFPCKG 769

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G +      ++G  + +
Sbjct: 770 RGTKGVIAMATTAKNGPLVGA 790



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 13/236 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      + L     E+     + + RG ++        +  SV L AL  +  D L   
Sbjct: 630 DEGERITSILPVEGYEEGHFIFMATARGIVKKTDMQQFARQRSVGLRALELEADDWLVGT 689

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  ++LLS++GKA       + +       ++  I L     +++  V  +   +
Sbjct: 690 AVTDGSCDVMLLSSEGKAVRFQEQAVRAMGRTARGVRG-IKLGDEHRLISLIVPQADSTI 748

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFL--KVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           L VS KG     +  E     R  KG   +     +   +  V   TGD + ++ +    
Sbjct: 749 LTVSEKGYGKRTDTEEFPCKGRGTKGVIAMATTAKNGPLVGAVQVSTGDEIMLISDQGTA 808

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +   +++I  + R  +GVR+   ++     V   +I E    +  A  +      +
Sbjct: 809 VRTRVEEISTLGRNTQGVRVIKTREDE-KLVRLSRIVEDDDAVPEAESAETVGSPE 863


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLI+  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEV--LSLEDEDLIEEADVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRIAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + +DG    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYSIRFNQSAVRGMSRIATGVKGVNLRDGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G    K   ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAG 750



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G +       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMSRIATGVKG-VNLRDGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK   T         +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGSLAGLMTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E  +   +F  +   
Sbjct: 562 RVYRLKGYEIPEYGRIAKGLP--IVNLLK-LDEGESIQTIINVESERSDDAYLFFTTRHG 618

Query: 493 GRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW--------IRS 532
             +RT+  E +              +   +   + E++   ++ +  G+        +R 
Sbjct: 619 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ ++GD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLRDGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + K+
Sbjct: 739 AKITEKNGSLAGLMTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   + +  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDLLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDLLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT   E +   +  L+   +++  + + +            +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 410/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG  +   + + E+++ GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGG-TIYGYDGVREAFKTGRGRVVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+V+EIPYQV K+ +I+K A+L+  K+I  +  IRDES      +++
Sbjct: 244 KAIIEEV-KGRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  + +++ F +N   L  G  P+++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKG-RPEMLNLKDMIHHFVDHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF LTE Q  AI
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDRFELTEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E + LL   E +  +L   +++ + I  E+ E++  +     
Sbjct: 422 VEMRLRQLTGLEQDKLREEYEELLKTIEDLKDILARKERRMDIIKEELEEIRAKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R T  +++  D +     +I  E + + IS+ G+++              V     
Sbjct: 477 -GDERRTDIDIAGGDVSIT--DLIPDEKVVLTISHAGYVKRTSLMEYKTQNRGGVGQKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSKTSKGRAIQNLINIEPDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +      +         +  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLAA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT- 710
              TGD  V +  ++ K + F  ++   M R   GVR  +  D     +    + +  + 
Sbjct: 654 KLTTGDSQVMLAVKSGKAIRFEEEKTRPMGRNASGVRGITLADDNDEVIGMVAVNDPESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +        +  RGG G        ++G  ++
Sbjct: 714 VLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLVA 755



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 83/235 (35%), Gaps = 19/235 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       +   DK         + ++E I     ++ + +G ++        
Sbjct: 573 GSKTSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 ++A+  KEGD L  A       +++L    GKA           GR       +
Sbjct: 633 RPRTNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPMGRNASGVRGI 692

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +  ++++ I    V D    +LVVS  G        +     R GK    +S  EK   
Sbjct: 693 TLADDNDEVIGMVAVNDPESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGN 752

Query: 653 VVKVTG----DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +V +      D + ++ ++   +   + ++  M R   GVRL + K G     + 
Sbjct: 753 LVAINNVTDEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLKKGDTIAAVT 807


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/753 (37%), Positives = 446/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E 
Sbjct: 357 FRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLTERGE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +PE+S+GKG ++ S         +  ++ +        +T +    R
Sbjct: 651 TAVGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSIT-LHFGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  GS +P+G  R  + 
Sbjct: 710 KLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRI 742


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/852 (30%), Positives = 416/852 (48%), Gaps = 112/852 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++          +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADNDTPPQGGATPSDIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+VIGK HPHG+QSVYD+LVR+ Q F  R PLI GQGNFG+
Sbjct: 61  MHENGYEWNKQYRKSARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE R+ +V + +L  + +D VDF+  Y+  ++EP V P++FPNLL NG 
Sbjct: 121 VDGDPPAAMRYTEVRLEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +  +AL+D+P +  E LL+YI GPDFPTG +I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIM-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RAR  +E V +    I++TEIPYQV K+ +IEKIAEL+  KR+  + +
Sbjct: 240 QAYMTGRGSIMMRARATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V+    R    D+++ +++ ++ ++T F +NM  LS GR   VM L   
Sbjct: 300 IRDESDREGMRVVIEVKRDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPA-VMTLHDT 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDEII +IR    P   +  +
Sbjct: 359 LTAFIAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERL 418

Query: 418 VSRFS--------------------------LTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           + R                            L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERHWPAKDVASLVALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E  +   +L S  +    I  E+  ++  F+       RRT   E++        
Sbjct: 479 DKLALEIAEYLEILASRPRMRAIIREELLALRAEFNTP-----RRT---EITEGFGDLDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIAREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y L    L +   +  G+A+  ++ L  ++ I +              +++
Sbjct: 591 LFFSSKGQVYKLKVWRLPAAAPQARGKALINILPLQPDERITSIVPLPENLEEHSLWQIM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             ++ G       ++     R GK  +K+   E++  V        V +   N   + F 
Sbjct: 651 FATTGGTVRRNALADFSQVNRNGKIAMKLEEGEQIASVQLCNEHQDVLLTTANGACIRFP 710

Query: 675 IDQIPEMSRGK---GVRLQSYKDGGISDVICFKI-------------------------- 705
           + ++  + +G+   GVR    ++G    +I   I                          
Sbjct: 711 VPEVR-LFKGRDSVGVRGIRLEEG--DRLISMAIINHTDAAAEERVQYLRQSRAQAAEDA 767

Query: 706 ----------CEGLT--------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                      EG                 +  +   Y +  +     +  RGG G +  
Sbjct: 768 PIELEGEAPAAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAM 827

Query: 742 KGFPRSGKFLSS 753
               R+GK ++S
Sbjct: 828 AVNERNGKLVAS 839



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 13/177 (7%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             SV +  +  +EGD L      + TD     + + +   L      +       ++   
Sbjct: 720 RDSVGVRGIRLEEGDRLISMAIINHTD----AAAEERVQYLRQSRAQAAEDAPIELEGEA 775

Query: 595 DLNHNQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS-EEK 649
                +     F+   T    +L +S  G        E     R GK    + V+    K
Sbjct: 776 PAAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERNGK 835

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +     V   D + +V +  +L+   ++ I  + R  +GV    +       V+  +
Sbjct: 836 LVASFPVRDADQIMLVTDGGQLIRCPVNGIRIVGRSSQGV--IVFDTAADERVVSVE 890


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/769 (30%), Positives = 400/769 (52%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 22  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   GNFG+   D AAA RYTE +
Sbjct: 82  ARVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 141

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 142 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 201

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S ++LL    E I GPDFPTG ++V  R  I ++YR GRG   
Sbjct: 202 LREVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGALVV-GRNGIEDAYRTGRGSIT 260

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 261 MRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 319

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 320 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+ ++ +++L S + Q   ++ E+  + + F 
Sbjct: 439 ANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        +     + +I +E I V IS  G+++          K     
Sbjct: 499 D-----DRRSKLV---PFEGDMSVEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        YD+   L++ +  G        +  +    G   + +       +++
Sbjct: 611 PDEQIAQILAIRDYDAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDE 670

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++    + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 671 LIGAELVSAEDDLLLISRKAQSIRFTATDDALRPMGRATSGVKGMSFREG--DELLSMNV 728

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 729 VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 777



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     +  P  V+ +  G ++      
Sbjct: 587 KAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYDAAPYLVLATKGGLVKKTSLKD 646

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 647 YDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISRKAQSIRFTATD-DALRPM 705

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 706 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAA 765

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G    
Sbjct: 766 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 823

Query: 700 VICFK 704
           V+   
Sbjct: 824 VVGIA 828



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 702 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 761

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 762 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 821

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 822 DAVVGIAR 829


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 451/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ +L+GLLIAYLN+DE+I IIR ED PK V+++RF+LT+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAVLMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L +
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDGQSLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGALLPRGLQRV 741


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y ++V +AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF+L+E Q 
Sbjct: 359 ITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 -----SRRTEL--MIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G D + +  ++   + F+   I  M R   GVR  S ++     V   +I +    +
Sbjct: 652 LTNGQDDIIIGTQSGYSVRFNEASIRNMGRSATGVRGVSLREDD-RVVGASRINDHQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G       P++G+   
Sbjct: 711 VITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  D I++ +  G  Y++
Sbjct: 612 FFTTKQGVVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A   +   ++LV++  G     E +E   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 VMKLDAD--AKIVTFALVQ 805



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ +  G+        IR+
Sbjct: 619 VVKRTEVSEFNNIRQNGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+ 
Sbjct: 679 MGRSATGVRGVSLREDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  D 
Sbjct: 799 VTFALVQADD 808


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/774 (34%), Positives = 419/774 (54%), Gaps = 41/774 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N +  + +    +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI+++MSE+GL 
Sbjct: 2   DTNDVTYDRIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLG 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               ++KSARIVG+ +GK HPHGD S+Y ++VR+AQ F  RYPL+ GQGNFG+IDGDS A
Sbjct: 62  SDKQYRKSARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++  L+L  +D+D V+FR  ++E   EP V PS+FPNLL NG+SGIAVGM
Sbjct: 122 AMRYTEARMSKMTALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPE----------ISIEKLLEYIIGPDFPTGGIIVESRE 237
           AT+IP HN+ E+    + +IDN              IE+L+  I GPDFPTG   +  R 
Sbjct: 182 ATNIPPHNLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGA-TIYGRY 240

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG  +V+A+  +E +  G   IVVTEIPY V KS LIEK+A+L+  ++I  
Sbjct: 241 GIDQAYRTGRGKVKVKAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDG 300

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  +   ++    R ++P +++  ++  + ++  F +NM  L   + P+V+ L
Sbjct: 301 ITDIRDESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDK-PKVLNL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPK 414
             IL+E+L H++EV+ RR+ F +   + R  IL+GL  A  NID ++++IR      + K
Sbjct: 360 KQILEEYLKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAK 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    LTE Q  AI+ +RLR+L  LE  +I  E   LL + E + S+L S  +  + 
Sbjct: 420 DKLMEAIELTEIQAQAIVEMRLRALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSV 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---- 530
           I  EI EVK+ +         R T   +   +     + +I++E I V I+  G+I    
Sbjct: 480 IKDEITEVKQKYGDG------RRTDITIDEDEYDI--EDLIDEENIVVTITQLGYIKRIP 531

Query: 531 ----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               ++       +  ++  E D +K        + I+  +  GKAY +    +      
Sbjct: 532 LDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  L++L+ ++ I   F    ++    L +V+ KG        +     + G   
Sbjct: 592 ARGTAIVNLLELDKDEKITAVFPIKEFEDNTFLTMVTKKGQIKKTPLKDFRNIRKGGLIA 651

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           L ++ E+++  V + T  D + V   N + ++F    +  M R  +GVR  +   G   +
Sbjct: 652 LSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRPMGRTARGVRAINL--GETDE 709

Query: 700 VICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           VI   +  EG   + +  +   +          KRGG G  + K   ++G  + 
Sbjct: 710 VIGATVPKEGEQILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIG 763



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 14/217 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +      A       E      +++ +G I+              L AL   E D L 
Sbjct: 602 ELDKDEKITAVFPIKEFEDNTFLTMVTKKGQIKKTPLKDFRNIRKGGLIALSLNEEDELV 661

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 + D IL+ + +G+     A ++         ++  I+L    +++ A V     
Sbjct: 662 DVHQTTSKDAILVATRNGQGIMFDATDVRPMGRTARGVRA-INLGETDEVIGATVPKEGE 720

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L  + KG     +     A  R GK      +   +   + +      D + ++    
Sbjct: 721 QILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIGVASVSEEDELLLITSQG 780

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            ++   + QI  + R  +GV+L +  D     V+C +
Sbjct: 781 IIIRIKVAQISSIGRNAQGVKLINVADDV--QVVCME 815



 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 55/134 (41%), Gaps = 2/134 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  + A++  E D +  A      ++IL  +  G           + +  G+ 
Sbjct: 689 VRPMGRTARGVRAINLGETDEVIGATVPKEGEQILTTTEKGLGKRTQIEAFRAQKRGGKG 748

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +++         I+         +LL+++S+G    ++ ++I +  R   G   + V+ +
Sbjct: 749 LRINKITEKTGCIIGVASVSEEDELLLITSQGIIIRIKVAQISSIGRNAQGVKLINVADD 808

Query: 648 EKMKLVVKVTGDHV 661
            ++  + KV  + +
Sbjct: 809 VQVVCMEKVNEEFI 822


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/755 (35%), Positives = 415/755 (54%), Gaps = 30/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM  +GL     +KKS
Sbjct: 9   NIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VGEV+GK HPHGD ++YD+ VRLAQ F  RYPL+ GQGNFG IDGD AAA RYTE R
Sbjct: 69  SRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF   Y+E + EPVV PSKFPNLL NG +GIAVGMAT++P HN
Sbjct: 129 MQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +IS+++L++++ GPDFPTG   +   E I ++Y  GRG   VRA 
Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGA-NIMGLEGIKQAYHTGRGKITVRAV 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE       I+VTEIPYQV K+ LI KI ELI  KRI  + D+RDES      ++  
Sbjct: 248 ANIEE-HNNKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L  G  P+V+ L  ++  ++ H+R+V+ RR
Sbjct: 307 LKRDANPNIILNNLYKHTQMQTTFGVINLALVNGE-PKVLNLKELIGHYVEHQRDVITRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
             F ++  + R  I++GLL A  +IDEII IIR      +  ++ RF  T+ Q ++IL +
Sbjct: 366 CRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYSDAQEKLMERFGFTKIQAESILEM 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RLR L+ LE  +++ E ++L+ E  ++  +L + +   N I  E+ E+KE F        
Sbjct: 426 RLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGD-----D 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFK 546
           RRT   E+         + +I++E + + ++ +G+I+ + S +  +         AL  K
Sbjct: 481 RRT---EIKPNFDEIEIEELIKEEDVVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTTK 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVT 604
           E D +       T   IL  +  G+ Y L A  +  G+    G+ I  L++L H + +  
Sbjct: 538 EDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVNA 597

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDH 660
                       L++ + KG           A  + G   + +  ++++  V V    D 
Sbjct: 598 VIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVDDDELIQVRVSTVEDS 657

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
             +V +    + F +  I E+ R G+GVR          +V+   +  EG   +  +   
Sbjct: 658 AMLVTKKGLAIKFELSDIREIGRTGQGVRGIKL--DKDDEVVSMNLASEGKHLLVISEYG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +        +  RGG G    K   ++G  +SS
Sbjct: 716 YGKRTLASNYKVQNRGGKGVKTYKVTDKTGFVVSS 750


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/849 (31%), Positives = 420/849 (49%), Gaps = 112/849 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN + ++ L  + +K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E
Sbjct: 8   DNSTPTDGLPSD-IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 67  NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 126

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE R+ +VA  +L  +D++ VDF++ Y+  +SEPVV P+KFPNLL NG  GI
Sbjct: 127 DPAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +AA+A+++NP +S+E+L++ + GPDFPTGG+I+  R  I  +Y
Sbjct: 187 AVGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 245

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              RG   +RA+  VEEV +    ++VTEIPYQV KS +IEKIAEL+  KRI  + DIRD
Sbjct: 246 ETARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRD 305

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R   PD+++  ++  S ++T F  N+  L+ G  P+ M L  +L+ 
Sbjct: 306 ESDRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALN-GGKPEQMNLSDMLRA 364

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------ 417
           +++ R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR    P          
Sbjct: 365 FVSFREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMER 424

Query: 418 -----------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+E Q  AIL+LRL+ L  +   +I+ EL+ +
Sbjct: 425 NWPAKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 484

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  +    +  E+ E+K+ F+       RRT   E         ++ +
Sbjct: 485 GAEISDYLEILRSRARIQEIVRNEMLEIKQEFATP-----RRTEIIE---GGPDFDEEDL 536

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +L  
Sbjct: 537 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 596

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S+ G  Y +    L  G     G+A+  L+ L   + I +               ++  +
Sbjct: 597 SSRGICYKMKVWRLPLGGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVMFAT 656

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            +G     + S+ +   R GK  +K+   + +  V   +  D V +     + + F +  
Sbjct: 657 IRGTIRRNKLSDFVNINRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTD 716

Query: 678 IPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTW------------------------ 711
           +     R   GVR     D     VI  +I   +                          
Sbjct: 717 VRVFAGRNSVGVRGIRLADE--DRVISMQILHHIDVSAEERAAYLKLSRAMRGEADENGN 774

Query: 712 ---------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                      +  +   Y +  +     +  RGG G       
Sbjct: 775 GADEEGVVAGDLPQERYAQMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVN 834

Query: 745 PRSGKFLSS 753
            R+G  +SS
Sbjct: 835 SRNGGLISS 843



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 81/296 (27%), Gaps = 67/296 (22%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
              T  G+       + + ++ T    + E E        +  + RG IR  K       
Sbjct: 613 GGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNKLSDFVNI 672

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                 A+  ++GD +         D ++L +  G+    P  ++    G        I 
Sbjct: 673 NRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNSVGVRGIR 732

Query: 596 LNHNQDIVTAFVY----------------------------------------------- 608
           L     +++  +                                                
Sbjct: 733 LADEDRVISMQILHHIDVSAEERAAYLKLSRAMRGEADENGNGADEEGVVAGDLPQERYA 792

Query: 609 ---DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTGDH-V 661
               +   +L +S  G        E     R  KG T + V+S    +     V   H +
Sbjct: 793 QMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRNGGLISSFPVEDSHQI 852

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDVICFKICEGLTWIDSA 715
            +V +  +L+   +D I    R   GV   ++  D  +  V      +    ++  
Sbjct: 853 MLVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISEVDEDDVLEDG 908


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/841 (31%), Positives = 425/841 (50%), Gaps = 109/841 (12%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   V  V++   L++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+  
Sbjct: 2   TDLAREVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALID+  ++ + L+EYI GPDFPT GI +  R  IV++YR GRG  
Sbjct: 182 IPPHNLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGI-INGRAGIVQAYRTGRGRV 240

Query: 251 RVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E   + G   I+VTEIPYQV K+RLIEKIAEL+  K+I  + ++RDES ++ 
Sbjct: 241 YMRARAEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  + ++++ +++  + ME+ F +N   L  G+ P+++ L  +L  ++ HRR
Sbjct: 301 MRIVIELRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------ 420
           EV+ RR+ + ++    +  +L+GL +A  NID +I +I+      + K  ++ +      
Sbjct: 360 EVVTRRTVYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGD 419

Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+  Q  AIL+LRL+ L  LE  ++ ++ 
Sbjct: 420 VLQMLERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL +  ++  +L + ++    I  E++ V+E ++       RR+   E+  + +    
Sbjct: 480 QELLEQIAELLKILGNPERLMEVIREELQAVREEYADE-----RRS---EIVASRQDFSM 531

Query: 512 QAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +SN G+         R+ K      SA   K+ D ++  L A T D +
Sbjct: 532 EDLIAEETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTL 591

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQDIVTAFVYDST--------- 611
           LL +  GK + L    L  G     G+ I  L+  L  ++ I      D+          
Sbjct: 592 LLFTNAGKVFWLRTFELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGG 651

Query: 612 -------------------------------------CKLLVVSSKGNAFIVEESEIIAN 634
                                                  + + +S G       +     
Sbjct: 652 EEDIVDVDDAADVIEDETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARP 711

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
              G   +K+   E +  V    G + + +V  N K + F   ++  MSR  +GVR    
Sbjct: 712 RSSGLIAVKLQEGEHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARGVRGIKL 771

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G +  +      E    + ++   Y +           RGG G +      R+G+ + 
Sbjct: 772 AEG-VDVISLIVPEENGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVG 830

Query: 753 S 753
           +
Sbjct: 831 A 831



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 21/272 (7%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +   L + ++    +  +   V++  +   +         +V   +  +  +   E 
Sbjct: 620 IVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADVIEDETDSDVEVEGEV 679

Query: 518 E--------PITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           E        P   + ++ G ++        +  S  L A+  +EG+ L         + I
Sbjct: 680 EAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHLVNVAITQGHEDI 739

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L++ +GKA       +         ++  I L    D+++  V +   ++L  S  G  
Sbjct: 740 MLVARNGKAVRFHQSKVRVMSRLARGVRG-IKLAEGVDVISLIVPEENGQILTASEHGYG 798

Query: 624 FIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
                ++     R  +G   + ++    ++    +V G+  + ++     L+   ++Q+ 
Sbjct: 799 KRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQVS 858

Query: 680 EMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
              R  +GVRL    DG  +  +      EG+
Sbjct: 859 TSGRNTQGVRLIRLADGEALCGLATIPELEGV 890


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/753 (32%), Positives = 403/753 (53%), Gaps = 29/753 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+   F   +KKSAR+V
Sbjct: 5   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ V FR  Y+   +EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+  L  +DNP   I +LL  + GPDFPTG  I   +  ++E+Y  GRG  ++R +  +E
Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGK-GLIEAYTTGRGSIKIRGKAEIE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    + 
Sbjct: 244 ERKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PD+++ +++  + +ET F +NM V++  R   ++ +  +L+ +L+HRREV+ RR++F 
Sbjct: 304 VIPDIVINALYKYTPLETSFGINMLVVADNRPA-LLNIQQVLEHFLSHRREVVLRRTAFD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  NIDE+++IIR      + +  ++ RF L+E Q  AIL++RL
Sbjct: 363 LRKSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMERFGLSERQAQAILDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  ++  E + L+   E + S+L + +     I  EI E+K+ ++         
Sbjct: 423 QRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLRGVIRDEITEIKDKYATPRK----- 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEG 548
               E+    +      +I  E + + +S RG+I+          K     ++ +     
Sbjct: 478 ---TEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGD 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606
           D ++         ++LL +  G+ + LP   +  G     G  I  L+ ++  + + TA 
Sbjct: 535 DFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +      L V+ KG                G   + +   +++  V ++  +  V 
Sbjct: 595 AIREFSFERYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTLKEGDELLTVKEIDDNAEVL 654

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYN 720
           +         F I  I    R   GV+  + K    ++  +          +  +   Y 
Sbjct: 655 LATNQGLSNRFHISGIRPTGRAAAGVKGIALKGQDRVAAGVIMTGNGRNEVLTISAHGYG 714

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     L  RGG G +  +  P++G+ + +
Sbjct: 715 KRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGA 747



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 518 EPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E   + ++ +G ++   +       S  + A+  KEGD L           +LL +  G 
Sbjct: 602 ERYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTLKEGDELLTVKEIDDNAEVLLATNQGL 661

Query: 572 AYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +       +  +GR       + +              +   ++L +S+ G         
Sbjct: 662 SNRFHISGIRPTGRAAAGVKGIALKGQDRVAAGVIMTGNGRNEVLTISAHGYGKRTSIEH 721

Query: 631 IIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G   + +     + + +  V+    D + ++    K++  S+  I  + R   
Sbjct: 722 YPLRNRGGSGVINMRVTPKTGQVIGAVMVNADDELLLLTSANKIIRLSVSDISAVGRATQ 781

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV L   +  G   V  F + +
Sbjct: 782 GVMLVRME--GEVTVTGFDLVD 801


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/772 (31%), Positives = 401/772 (51%), Gaps = 47/772 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 19  RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 79  ARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +L+ +DED VDF+D Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN
Sbjct: 139 MAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 199 LREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   RI  + D+RDE S+   +
Sbjct: 258 MRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDETSSRTGQ 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 317 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A  +IDE+IA+IR  D     +  ++   S+ E Q
Sbjct: 376 VVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLMDLLSIDEVQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E   L  +  + +++L S ++Q   ++ E+  + E + 
Sbjct: 436 ANAILEMQLRRLAALERQKILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 496 D-----DRRSQLV---PFDGDMSIEDLIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 548 VRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------- 646
            ++ I        Y++   L++ +  G        +  +    G   + +          
Sbjct: 608 PDERIAQILAVRDYEAAPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGT 667

Query: 647 EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVIC 702
            +++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++ 
Sbjct: 668 ADELIGAELVSAADDLLLISKKAQSIRFTATDEALRPMGRATSGVKGMSFREG--DELLS 725

Query: 703 FKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 726 MNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 777



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 30/248 (12%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  V+ +  G ++      
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYEAAPYLVLATKAGLVKKTPLKD 643

Query: 538 VD------LSALHFKEGD--------SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            D      + A++ +E D         L  A      D +LL+S   ++    A +  + 
Sbjct: 644 YDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKAQSIRFTATD-EAL 702

Query: 584 RGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--- 638
           R  G A   +  +      ++++  V      +   +  G A      E     R G   
Sbjct: 703 RPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGI 762

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           K    V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G 
Sbjct: 763 KAAKIVEDRGSLVGALVVEESDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GK 820

Query: 697 ISDVICFK 704
              V+   
Sbjct: 821 RDAVVGIA 828



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 702 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 761

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + + ++L ++  G       +E+    R   G   + +   
Sbjct: 762 IKAAKIVEDRGSLVGALVVEESDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 821

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 822 DAVVGIAR 829


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/754 (33%), Positives = 400/754 (53%), Gaps = 32/754 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L + YL YA+S I  RA+PD+RDG KPVHRR + AM E+G  +   + KSARIV
Sbjct: 14  IAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAMRELGNTYNRPYIKSARIV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD + YD+LVR+AQ F  RYPL+ GQGNFG++DGDSAAA RYTEARMT++
Sbjct: 74  GDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDSAAAMRYTEARMTRL 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            + ++  +D++ VDF   Y+    EP V PS+ PN+L NG+ GIAVGMAT IP HN+ E+
Sbjct: 134 DQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSEGIAVGMATKIPPHNLTEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
               +AL+DNPEI++ +L+E I GPDFPTGG  +  R  I E+Y  GRG   +R++  +E
Sbjct: 194 INGLIALVDNPEITVHQLMEIITGPDFPTGG-FICGRAGIREAYETGRGVIVMRSKTHIE 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           + G     IV+TEIP+Q  K+ L+EKIA L+  KRI  + +IRDES      V+    + 
Sbjct: 253 QRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIRDESDRHGVRVVLDLRKD 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  ++ ++ ++  F + +  +   + P+++ L  IL+ +LAHR+ V++RR++F 
Sbjct: 313 EIPDIVINQLYKMTPLQKSFGIILLCIVNNK-PEILNLKQILQHFLAHRKTVVYRRTAFE 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  ++DE++ +IR   N  + K  ++ RF L+E Q   IL++RL
Sbjct: 372 LRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILRFELSEIQAQTILDMRL 431

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  +I S+ + + A+   +  +L         I  E  +++E +        RR
Sbjct: 432 QRLTGLERDKIISDYNEIQAKISWLKQVLADDNLVVQIIREEFEKIREEYGD-----DRR 486

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   +        L + +I  E + V +S+ G+I+          +     +  +   E 
Sbjct: 487 TEIIDAPD---EILPEDLITPEEMVVTVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLED 543

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D +     A + D  L  +  G+ +      L        G+AI  L++L  ++ +    
Sbjct: 544 DFVTSLYTASSLDTFLFFTNKGRVFWRKVYELPLAGRTARGKAIVNLLELGEDEKVAAIL 603

Query: 607 VY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                   D T  +L V+ +G       SE     RKGK  L +  ++++      +GD 
Sbjct: 604 PVADLANMDDTVSVLTVTKQGRVKKTFISEYKRPLRKGKFGLTIRDDDEILSAAITSGDD 663

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +    + F    +  M R   GV+  +  D     V    +    + +      
Sbjct: 664 EIFLVTKKGLSIHFHESDVRAMGRLAAGVKGITLGDDD-EVVGVAVLKSDASILTVTENG 722

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +        L  RGG G    K   R+G  + 
Sbjct: 723 YGKRTAVSEYKLQSRGGKGVFTIKTSERNGNVVG 756



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 80/211 (37%), Gaps = 17/211 (8%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
           ++     + ++ +G ++                 L  ++ D +  A      D I L++ 
Sbjct: 611 MDDTVSVLTVTKQGRVKKTFISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTK 670

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            G +      ++   R  G     +  I L  + ++V   V  S   +L V+  G     
Sbjct: 671 KGLSIHFHESDV---RAMGRLAAGVKGITLGDDDEVVGVAVLKSDASILTVTENGYGKRT 727

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMS 682
             SE    +R GK    + + E+   VV     V  D V +V  + K++   +D +  + 
Sbjct: 728 AVSEYKLQSRGGKGVFTIKTSERNGNVVGVLPVVDEDQVMLVANSGKVIRMPMDTVRIIG 787

Query: 683 R-GKGVRLQSYKDGG-ISDVICFKICEGLTW 711
           R  +GVRL +  +G  + D+      EG+  
Sbjct: 788 RNTQGVRLINLDEGELVVDMSMLAREEGVDL 818


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/737 (48%), Positives = 501/737 (67%), Gaps = 5/737 (0%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  +++   L  AL ERY+AYA+STI  R++PD+RDG KPVHRR+++AM ++ LD  +
Sbjct: 3   TDLAGHIEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTS 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VG+VIGK HPHGD SVY++LVRLAQ F  RYPL+ GQGNFG+IDGD AAA R
Sbjct: 63  GFKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T+VA+ +L G+ +DAVDFR TY+ ED EP+V P  FPNLLANG +GIAVGMATS
Sbjct: 123 YTESRLTEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATS 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  EIC AA  LI+ P+++I +L++ + GPDFPTGGI+VE R+SI+ SY  GRG F
Sbjct: 183 IPPHNAAEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSF 242

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R RARW VE+   G+W I+VTEIPYQVQKSRLIE+IA+L+  +++PLL D+RDES  D+R
Sbjct: 243 RTRARWEVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTDIR 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +VL PK + ++P++LME++F  + +E RF LNMNVL   RVP V+ L  +L+ WL H  E
Sbjct: 303 LVLEPKTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHE 362

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           VL RRS+ R+ A+ RR+EIL+G L  YLN+DE+I IIR ED+PK  +++ FSLT+ Q +A
Sbjct: 363 VLVRRSNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPKVSLMATFSLTDVQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +LN+RLRSLR+LEE +I+ E D L  E++ +++LL S +++W +I  ++    + F  S 
Sbjct: 423 VLNMRLRSLRRLEEMEIRRERDKLADEQKALETLLGSERRRWTRIGKDLDGTIKKFG-SG 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG RRT                 I++EP+TV++S  GWIR++K H +D     FKEGD 
Sbjct: 482 PLGERRTLIAAAPEL-IDISAALEIDREPLTVLLSREGWIRAMKGHGLDPQGHRFKEGDE 540

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
             +++   +TDR+ L+S+ GKAYT+ A +L  GRG G+  + ++D+     +VT F    
Sbjct: 541 GWLSVECQSTDRLCLISSSGKAYTIKAADLPRGRGFGQPFRTVVDVPQEDRVVTLFPVSD 600

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
             + L+ S+ G   IV E+ ++A  R GK    +   +++   V V G HV  +G+N++ 
Sbjct: 601 EGRRLIASAAGRGMIVSEAGLVAEKRTGKQVFNIKDGDEVFACVPVGGTHVLTLGQNKRA 660

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           LIF ++Q+PEM+RG GV  Q   D  + D+    + EGL W         R+  DL    
Sbjct: 661 LIFPLEQVPEMTRGGGVAFQKLGDSTLRDIRTLTLSEGLLWQ---EGQRVRATADLAPLE 717

Query: 731 GKRGGVGSLVPKGFPRS 747
           G+RG VG   P+   R+
Sbjct: 718 GRRGAVGRAAPQWMLRN 734


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/773 (32%), Positives = 398/773 (51%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++SN+       +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MADSDLSNN------RISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYG 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 55  MSELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG 
Sbjct: 115 VDGDGAAAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGA 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGM T+IP HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGGI++  +  I 
Sbjct: 175 TGIAVGMTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIR 233

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG   VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + D
Sbjct: 234 KAYQTGRGNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITD 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I DES  +   ++    R     +++ +++ ++ M+T F  NM  +  G  P+V+ L  I
Sbjct: 294 INDESDREGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGA-PKVLSLKQI 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+ +V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  +
Sbjct: 353 LIYYLEHQEDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  + L++ Q  AIL++RL  L  LE  +I+SE  +LL        +L S  +    I  
Sbjct: 413 MDNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKDRINQIIYE 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E++  F        RRT          +   + +IE+E + V +++ G+I+      
Sbjct: 473 ELMEIQRKFGDK-----RRTELMVGEV--LSIEDEDLIEEEEVAVTLTHNGYIKRLPTTE 525

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D ++  L   T D +L  +  GK Y + A  +        G
Sbjct: 526 FKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKG 585

Query: 588 EAIQLLIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             +  L+ +N  + I            S   L   + KG        E       G   +
Sbjct: 586 IPVINLLGVNSGEKIQAVVNVTGDASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAI 645

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  ++++  V    G    ++G +    + F    +  M R   GVR    +D     V
Sbjct: 646 TLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDD--DFV 703

Query: 701 ICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I F +            + Y +        +  RGG G        ++G    
Sbjct: 704 IGFDVLKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAG 756



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 12/226 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                +      + +G ++              L A+  K+ D L           +++ 
Sbjct: 609 DASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAITLKDDDELIGVTITDGHQNVIIG 668

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG A +     + S       ++  I L  +  ++   V      + +++ KG     
Sbjct: 669 THDGYAVSFDETTVRSMGRTASGVRG-IRLRDDDFVIGFDVLKPDSNVFIITEKGYGKQT 727

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             ++     R GK     +  EK   +  +  V G + + V+     ++ F+I  + +  
Sbjct: 728 PAADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVMTNQGVMIRFNIATVSQTG 787

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R   GVRL    D G    +     E       A  +   +  D  
Sbjct: 788 RATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATDATTEAPVDDQ 833



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + +     ++ ++ G+        +RS+   +  +  +  ++ D +      
Sbjct: 650 DDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDDDFVIGFDVL 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                + +++  G     PA +       G+ I+       N  +      D    ++V+
Sbjct: 710 KPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVM 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           +++G       + +    R   G   +++  + ++  + KV 
Sbjct: 770 TNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVD 811


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 405/759 (53%), Gaps = 33/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KK
Sbjct: 4   ERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+IP  
Sbjct: 124 RMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +  +ALI NPE+ +  L++++I PDFPTGGI +   E +  +Y  GRG   +RA
Sbjct: 184 NLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGI-IYGYEGVRNAYMTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI EL+  K++  + DIRDES  D   ++
Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+V+ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMIYYIKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +   ++R  IL+GL I   N+DE+I  IR     +  +  ++ RF L+E Q  A
Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E    LA  E +  +L+S ++Q   I  E+ +V+E++  + 
Sbjct: 422 ILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSPEKQMEIIREELLKVREVYGDA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGQGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +  G+ Y L    +        G A+  +++L   +
Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAARGRALANIMELQPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++ G        +     R G   + +   +++       
Sbjct: 594 KIRAYINIRNFDEPGFIVMATTNGIVKKTPLDDFSHPRRNGLAAITIEEHDELLDARLTD 653

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFKICEGLTWID 713
           G+H + +   +  ++ F+  +I  M R   GV+  +  +G   IS V   +    L  + 
Sbjct: 654 GEHQIILAKSSGFVVRFAEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRFDTALLAVT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G  + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNG--FGKRSRVEDYRLTRRGARGVITLKAHEKIGALVG 750



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +     ++    V+ +  G ++              L+A+  +E D L 
Sbjct: 588 ELQPGEKIRAYINIRNFDEPGFIVMATTNGIVKKTPLDDFSHPRRNGLAAITIEEHDELL 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-T 611
            A       +I+L  + G         + S       ++  I L+  +  ++        
Sbjct: 648 DARLTDGEHQIILAKSSGFVVRFAEAEIRSMGRTAMGVKG-ITLDEGEKCISMVTTKRFD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGEN 667
             LL V+  G        +     R  +  + + + EK+  +V        D + ++  +
Sbjct: 707 TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKIGALVGLLDVNDDDDLIIITTH 766

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +    +  I    R   GVRL     G +   + 
Sbjct: 767 GIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALA 802


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/769 (30%), Positives = 399/769 (51%), Gaps = 39/769 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E+ +  +S+   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++AM+E G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +K A  VGEV+G  HPHGD SVY +LVR+AQP+  RYPL+ GQGNFG++DGDS AA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++A  +LQ +D++ VDF++ +++   EP V P++ PNLL NG SGIAVGMAT+
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +P HN+ E  +  +A I+   +I +E L++Y+  PDFPTGG  +     + E++  GRG 
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGG-FIYGYSGVKEAFETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R+R  +E+       I++TEIPY V K+ L+  IA+LI  KR+  + +I DES    
Sbjct: 241 VVIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +  +++  ++ ++ +++ F +N   L  G  P+++ L  ++ E++ HR+
Sbjct: 300 MRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKG-RPRLLNLKDLIGEFVDHRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTEN 426
           EV+ RR  F ++    R  IL+GLLIA  NIDE+I+IIR+       M     RF L++ 
Sbjct: 359 EVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+++RLR+L  LE  ++++E + ++A    +++LL         +  E+ E+KE +
Sbjct: 419 QARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                     T   E+  A +    +     + + + +S+ G+I+              V
Sbjct: 479 GD--------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGV 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  +E D ++    A     I+L +  G+ Y L    +  G     G AIQ L+++
Sbjct: 531 GAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNI 590

Query: 597 NHNQDI---------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           + +  +          T   + ++  LL  + +G                G   + +   
Sbjct: 591 DPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDN 650

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-- 703
           + +  V    G   + +     + + F    +    R   GV+  +  D G  +V+    
Sbjct: 651 DGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGEDEVVGMIS 710

Query: 704 -KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            K  E  T +  + + Y +  N     +  RGG G        ++GK +
Sbjct: 711 IKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLV 759



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 73/201 (36%), Gaps = 15/201 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  + RG I+        +  +  + A+  ++ D L      +    +++ +  G+A   
Sbjct: 618 LFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRF 677

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
               +         ++ +   +  +D V   +   +     +LVVS KG        +  
Sbjct: 678 HESVVRPSGRTAMGVKGMTLDDDGEDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYR 737

Query: 633 ANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
              R GK    ++  EK   +  +  VT  + + ++ ++   +   +  +  + R   GV
Sbjct: 738 ITNRGGKGVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGV 797

Query: 688 RLQSY-KDGGISDVICFKICE 707
           +L    K G     +C  + E
Sbjct: 798 KLIDLSKRGDEIASVCSVVSE 818


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 407/757 (53%), Gaps = 32/757 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V++   +   YL YA+S I  RA+PD RDG KPV RRI++AM   GL     + K A
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+ K HPHGD SVYD+LVRLAQP+  RYPL+ GQGNFG++DGD+AAAYRYTEAR+
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L+ +D D V+F   ++    EP+V P++ PNLL NG++GIAVGMAT+IP HN+
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+    L+DNP+ ++E L+++I GPDFPTGG  +   E I+ +Y  GRG   +RA+ 
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGG-SILGTEGIISAYSSGRGRILIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RLIE+IAEL+  KRI  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++  +F  + M+T F  NM  L   G+ P+ + L   L+E++ HR+ V+ RR
Sbjct: 305 KQDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           +   +     R  IL+GL IA   +DE+IA IR     +  +  ++  F L+E Q  AIL
Sbjct: 365 TEHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKNFKLSELQSQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE  +I+ E   +L     ++ +L+  ++ +  I  ++ E+KE +      
Sbjct: 425 EMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSKPERVFKIIKDDVAELKEKYGD---- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544
             RR+     + A      + +I    + V +++RG+I+ L   +          +  + 
Sbjct: 481 -VRRSRII--ADATGDISTEDLIPDMNVLVTVTDRGYIKKLPGDTYRVQNRGGRGIKGMT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D +   L  +T + +L  +  GK Y L    +   S    G  +  LI L   + +
Sbjct: 538 TKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRTAKGLPLVNLISLEPGELV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +      +D    L++ + KG     + SE  +    G   + + + ++++ V    GD
Sbjct: 598 TSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGD 657

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             + +  ++ + + FS  ++  M R   GV          +  +   +    L  I S G
Sbjct: 658 EDILMTTQHGQTIRFSQAEVRPMGRPASGVIGIKMSAKDQVVGMDLVRPDSQLLVITSHG 717

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  +     +  R   G +  +   + G  +++
Sbjct: 718 --MGKRTDLEDYPVKGRATQGVITMRL--KPGDIIAA 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 15/221 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      + +     +     V+ + +G I+  K           L A+    GD L
Sbjct: 589 ISLEPGELVTSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDEL 648

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYD 609
           +    ++  + IL+ +  G+        +   R  G     +I   ++    +V   +  
Sbjct: 649 RWVKTSNGDEDILMTTQHGQTIRFSQAEV---RPMGRPASGVIGIKMSAKDQVVGMDLVR 705

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA-VVGE 666
              +LLV++S G     +  +     R   G   +++   + +   + +T   +   +  
Sbjct: 706 PDSQLLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGDIIAAALVLTDSDIVTTITR 765

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           N  ++    D+I +  R   GV + +     +   +  +  
Sbjct: 766 NGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAVSAEPP 806


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/773 (32%), Positives = 398/773 (51%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++SN+       +  V+L   +   +L+YA+S I  RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MADSDLSNN------RISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYG 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 55  MSELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ +++D VD++  Y++ + EP V P++FPNLL NG 
Sbjct: 115 VDGDGAAAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGA 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGM T+IP HN+ E+  A   L+DNP+ ++  L+E + GPDFPTGGI++  +  I 
Sbjct: 175 TGIAVGMTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIR 233

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG   VRA+  +++   G   I+VTE+PY V K++LIE+IA L   K I  + D
Sbjct: 234 KAYQTGRGNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITD 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I DES  +   ++    R     +++ +++ ++ M+T F  NM  +  G  P+V+ L  I
Sbjct: 294 INDESDREGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGA-PKVLSLKQI 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+ +V+ RR+ F ++    R  IL+GL IA  +IDEIIAIIR        K  +
Sbjct: 353 LIYYLEHQEDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  + L++ Q  AIL++RL  L  LE  +I+SE  +LL        +L S  +    I  
Sbjct: 413 MDNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKDRINQIIYE 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E++  F        RRT          +   + +IE+E + V +++ G+I+      
Sbjct: 473 ELMEIQRKFGDK-----RRTELMVGEV--LSIEDEDLIEEEEVAVTLTHNGYIKRLPTTE 525

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D ++  L   T D +L  +  GK Y + A  +        G
Sbjct: 526 FKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKG 585

Query: 588 EAIQLLIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             +  L+ +N  + I            S   L   + KG        E       G   +
Sbjct: 586 IPVINLLGVNSGEKIQAVVNVTGDASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAI 645

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  ++++  V    G    ++G +    + F    +  M R   GVR    +D     V
Sbjct: 646 TLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDD--DFV 703

Query: 701 ICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I F +            + Y +        +  RGG G        ++G    
Sbjct: 704 IGFDVLKPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAG 756



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 12/226 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                +      + +G ++              L A+  K+ D L           I++ 
Sbjct: 609 DASASDNYLFFTTVKGVVKRTPVQEFANIRSNGLKAITLKDDDELIGVTITDGHQNIIIG 668

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG A +     + S       ++  I L  +  ++   V      + +++ KG     
Sbjct: 669 THDGYAVSFDETTVRSMGRTASGVRG-IRLRDDDFVIGFDVLKPDSNVFIITEKGYGKQT 727

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             ++     R GK     +  EK   +  +  V G + + V+     ++ F+I  + +  
Sbjct: 728 PAADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVMTNQGVMIRFNIATVSQTG 787

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R   GVRL    D G    +     E       A  +   +  D  
Sbjct: 788 RATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATDATTEAPVDDQ 833



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
           D   +   + +     ++ ++ G+        +RS+   +  +  +  ++ D +      
Sbjct: 650 DDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSMGRTASGVRGIRLRDDDFVIGFDVL 709

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                + +++  G     PA +       G+ I+       N  +      D    ++V+
Sbjct: 710 KPDSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVM 769

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           +++G       + +    R   G   +++  + ++  + KV 
Sbjct: 770 TNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVD 811


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/760 (31%), Positives = 397/760 (52%), Gaps = 30/760 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   +  V L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +
Sbjct: 5   MSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGDSAAA RYT
Sbjct: 65  KKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +L+ +++D VDF   Y+  + EP V P++FPNLL NG SGIAVGMAT+IP
Sbjct: 125 EARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  A   L++NP+++I +L++ + GPDFPTGG+++  +  I ++Y  GRG   V
Sbjct: 185 THNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+V EIPY V K+ LI +IA+L   K I  + D+ DE+  D   +
Sbjct: 244 RAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  IL+ +L H+ +V+
Sbjct: 304 VIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKQILQYYLEHQEDVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F ++    R+ I++GL IA  +IDEII IIR        K  ++  + L++ Q  
Sbjct: 363 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  +I++E   L         +L   ++    I  E+ E+++ F   
Sbjct: 423 AILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRERINQIIYDELMEIQKKF--- 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G +R T  +V         + +IE++ I V +++ G+I+                + 
Sbjct: 480 ---GDKRRTELQVGDI-TNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVK 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +     D ++  + + T D +L  +  GK Y++    +        G  I  L++++  
Sbjct: 536 GMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLLNIDSK 595

Query: 600 QDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + I           D    L   +  G        E       G   + +  ++++  V 
Sbjct: 596 EKISAVINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAINLHDDDELIDVD 655

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
            +      ++   N   L F+   +  M RG  GVR    +D   S +    + +    +
Sbjct: 656 VIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDND-SVIGAAPLHQDDNVL 714

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +   + +        +  RGG+G        ++G  + 
Sbjct: 715 VISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVG 754



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
             +     + +      +  G ++              L A++  + D L          
Sbjct: 602 INVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAINLHDDDELIDVDVIEDQQ 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G A +  +  + S  G G A    I L  N  ++ A        +LV+S  G
Sbjct: 662 TMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDNDSVIGAAPLHQDDNVLVISENG 720

Query: 622 NAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  +E     R G     V        +  +  V GD  + +V +   ++ F I+ 
Sbjct: 721 FGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVGMTTVAGDEDIMLVTDQGVIIRFGIES 780

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + +  R   GV L    DG     +     E  +  D+ G
Sbjct: 781 VSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDSDDDAQG 820



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 79/228 (34%), Gaps = 26/228 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTDLGRRRTTFCEVS----------- 503
              + ++ +S ++    I        + K +F  + D   +RT   E             
Sbjct: 586 IINLLNI-DSKEKISAVINVSHETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLKAIN 644

Query: 504 -RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIA 554
              D   +   +IE +   ++ +  G+        +RS+   +  +  +  ++ DS+  A
Sbjct: 645 LHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSMGRGAAGVRGIRLRDNDSVIGA 704

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              H  D +L++S +G     PA         G  ++ +     N  +V          +
Sbjct: 705 APLHQDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKNGPLVGMTTVAGDEDI 764

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
           ++V+ +G         +    R   G   +K+    K+  + KV  + 
Sbjct: 765 MLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKED 812


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/842 (30%), Positives = 402/842 (47%), Gaps = 114/842 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 18  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPDRKYVKS 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+IDGD  AA RYTE+R
Sbjct: 78  ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDGDPPAAMRYTESR 137

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 138 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 197

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALID+P ++IE L E I GPDFPTGG+I+  R     +Y  GRG   +RA+
Sbjct: 198 LGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLIL-GRAGTRAAYMTGRGSVVMRAK 256

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+ +    +V TEIPYQV K+ L+EKIA+L+  KRI  + D+RDES  D   ++  
Sbjct: 257 SHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDESDRDGMRIVVE 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +++ ++  R EV+ RR
Sbjct: 317 LKRDAMADVVLNQLYRYTPLQTSFGCNMVALN-GGRPELLNLKDLIQAFIDFREEVVSRR 375

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F ++    R  +L GL IA  NIDE+I +IR    P                      
Sbjct: 376 TKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDWPAADIAPLIA 435

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +      + L+E Q  AIL+LRL+ L  L   ++  EL  L  E      +L 
Sbjct: 436 LVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILR 495

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ EV+  ++             E+   D     + +I++E + V +S+
Sbjct: 496 SRARILGIVKAELAEVRAEYATPRK--------TEIQDWDSNVEDEDLIQREDMVVTVSH 547

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G+AY     
Sbjct: 548 AGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVW 607

Query: 579 NLL--SGRGHGEAIQLLIDLNH-NQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
            L   +    G+A+  ++ L+   + I T               ++  ++ GN    + S
Sbjct: 608 RLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLS 667

Query: 630 EIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE-MSR-GKG 686
           + +   R GK  +K+   + +  V +    D V +     + + F +  +     R   G
Sbjct: 668 DFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTG 727

Query: 687 VRLQSY-KDGGI---------------------------------SDVICFKICEGLT-- 710
           VR  +  KD  +                                  D+      +G    
Sbjct: 728 VRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPEADGEETT 787

Query: 711 -------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +  + R + +  +     +  RGG G    +   R+G  +
Sbjct: 788 ASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARNGHLV 847

Query: 752 SS 753
           +S
Sbjct: 848 AS 849



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 69/248 (27%), Gaps = 68/248 (27%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G +R  K             A+   EGD +         D +LL +  G+   
Sbjct: 652 VMFATASGNVRRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIR 711

Query: 575 LPAGNL----------------------------------------------LSGRGHGE 588
            P  ++                                                 R  GE
Sbjct: 712 FPVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGE 771

Query: 589 AIQLLIDLNHNQDIVTAFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           A+ L      + +  TA +            +   +L +S +G        E   + R G
Sbjct: 772 AVDLPTAPEADGEETTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGG 831

Query: 639 KTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR-LQSY 692
           K    +    +   +     V   D + +V    +L+   +D I  + R  +GV    + 
Sbjct: 832 KGIKAMEVNARNGHLVASFPVEPSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTA 891

Query: 693 KDGGISDV 700
           KD  +  V
Sbjct: 892 KDERVVSV 899


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/821 (30%), Positives = 409/821 (49%), Gaps = 94/821 (11%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++   +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  H++
Sbjct: 126 TKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DNP ISIE L+E+I GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 NEVIHACLAYADNPNISIEGLMEHITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  IL+GL +A  NID+II  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+  + + +        RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELSLILQQYGDE-----RRTQIVESR---IDFCRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   K+ D ++  + A     +L 
Sbjct: 536 LIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  GK Y L    +   S    G  +  L+ L+ N+ I        +     + + ++ 
Sbjct: 596 FTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENHYVFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G    VE  +       G   ++++ E+ +  V    G   + +     K + F+   + 
Sbjct: 656 GTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVR 715

Query: 680 EMSR-GKGVRLQS-------------YKDGGISD-------------VICFKICEGLTWI 712
            M R  KGVR                     + D             V    + E    +
Sbjct: 716 AMGRTAKGVRGMRVTLAAAVDSEDTELDHDELDDSEESTDSSVVSRIVSLVVVPETGEVL 775

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 776 CASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGA 816



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 91/261 (34%), Gaps = 38/261 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + + +  A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 629 DANESITAILPLTEFLENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------------IDLNHNQ-- 600
                  +I+L S +GKA      ++ +     + ++ +             +L+H++  
Sbjct: 689 AITDGQQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDTELDHDELD 748

Query: 601 ------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        IV+  V   T ++L  S+ G       ++     R GK  + + + E
Sbjct: 749 DSEESTDSSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSE 808

Query: 649 ---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
              ++   V + G   + ++ +   L+     ++    R  +GVRL    D   +  V+ 
Sbjct: 809 RNGELVGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVS 868

Query: 703 FKICEGLTWIDSAGRSYNRSE 723
            +  E   +I+        SE
Sbjct: 869 IEAVEDDEFIEVVEEIATESE 889


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/816 (31%), Positives = 407/816 (49%), Gaps = 85/816 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +  ++  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMSE+  D+  
Sbjct: 2   TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++A  +L  ++++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEIRMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LALI++P +SIE+L+EYI GPDFPT    +  R+ I+++Y  GRG  
Sbjct: 182 IPPHNLTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAA-SINGRKGIIDAYNTGRGRA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +E    G   I+V EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D  
Sbjct: 241 IMRSKAEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ +++  + M+  F +NM  L+ G+ P++  L  +L+ ++ HRRE
Sbjct: 301 RIVIEIKRGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           V+ RR+ F ++    R  +L+ L IA  NID IIA+I+    P                 
Sbjct: 360 VVTRRTVFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHV 419

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL LRL  L  LE  +I +E + 
Sbjct: 420 QGMLEKAGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL     +  +L +  +    I  E+ E+ E +      G  R T    +  D +   + 
Sbjct: 480 LLVLIAGLLFILRTPSRLMEVIKEELEEILEQY------GDERRTIINANEIDMSL--ED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+ +          +      +A   K+ D ++  L A+T D IL 
Sbjct: 532 LINEEDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S  GK Y L    L   S    G  I  L+ L+  + I        Y     +++ ++ 
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGEHITAILPVREYADDKYIIMATAH 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G       +        G   + +   +++  V    G D + +     K++ F+     
Sbjct: 652 GTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARD 711

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGR 717
                             +  M R   GVR      G    V+   + +G    +     
Sbjct: 712 SETGEVKIDAETGEEIIALRPMGRTATGVRGIKLDAG--QKVVSLIVPKGDGAILTVTEN 769

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RG  G +  K   R+G+ + +
Sbjct: 770 GYGKRTELSEYPAKSRGTKGVVSIKVSERNGEVVGA 805



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 31/245 (12%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A L       +   ++ +  G ++     +        + A++ K+GD L      
Sbjct: 628 EHITAILPVREYADDKYIIMATAHGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDIT 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLL------------IDLNH 598
             +D I+L S +GK          S  G        GE I  L            I L+ 
Sbjct: 688 EGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLDA 747

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVV 654
            Q +V+  V      +L V+  G     E SE  A +R  KG   +KVS    E +  V 
Sbjct: 748 GQKVVSLIVPKGDGAILTVTENGYGKRTELSEYPAKSRGTKGVVSIKVSERNGEVVGAVQ 807

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWI 712
             T D + ++     L+    + +  + R  +GV +    +D  +  +   +  +    +
Sbjct: 808 VGTFDEIMLISNKGTLVRTPAEGVSIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTEELL 867

Query: 713 DSAGR 717
           D  G 
Sbjct: 868 DEEGN 872


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/824 (31%), Positives = 411/824 (49%), Gaps = 89/824 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRA 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++
Sbjct: 297 NKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------- 416
            HRREV+ RRS F ++    R  IL+GL +A  NIDE+IAIIRN    +           
Sbjct: 356 LHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSW 415

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ L+  QV+AIL LRL  L  +   ++  E 
Sbjct: 416 TLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEY 475

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + LL +   +  +L+S ++    I  E+ EVK  F              E++ A      
Sbjct: 476 EELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDL 527

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D I
Sbjct: 528 EDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTI 587

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  S+ G+ Y L    L   S    G  I  ++ L  N+ I        Y+    +++ +
Sbjct: 588 LCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMAT 647

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
           + G    +  +E       G   L +  E+++  V      + + +     +++ F+ + 
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707

Query: 678 IPEMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL- 709
           +  M R   GVR                               D  I  V+   + +G  
Sbjct: 708 VRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDDNTEASLDLNIDKVVSLVVPKGEG 767

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +           R   G +  K   R+GK +++
Sbjct: 768 EILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 811



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 87/532 (16%), Positives = 187/532 (35%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 340 GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 396

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 397 IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 456

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 457 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 516

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 517 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 572

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 573 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 623

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 624 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 683

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
             ++++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 684 ITNSSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 743

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V     ++L  +  G     + SE    +R  K  + +   E
Sbjct: 744 DNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 855


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 408/765 (53%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNRKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQ +  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ +L  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN EI+I++L+++II PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGI-IYGYDGVRDAFHTGRGRVVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+G     I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES      +++
Sbjct: 245 KVNFDEIGN-RNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLRIVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L     P+ + L  I+  ++ HR EV+ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALV-HGRPEQLNLKDIIHHFVEHRHEVIVR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           R+ F ++    R  IL+G +        +D  I+IIR+   P   K  ++  F L++ Q 
Sbjct: 363 RTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIEAFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E D ++ E   ++ +L +  +++  I  E+ E+KE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYDAIMKEIANLEDILANEPRRFQIIKEELLEIKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  +      + +I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRT---EIDYSGGEMSIEDIIPNESVVLTISHAGYIKRTSLSEYKIQSRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  G+ Y L    +  G     G A+Q LI++  
Sbjct: 535 KAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEIPEGSKTAKGRAVQNLINIEP 594

Query: 599 NQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I      ++           +++V+  G                G   +++   +++
Sbjct: 595 DDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEAYSRPRVNGVNAIEIRDNDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS-DVICFKICE 707
                  G+  + +  +N K + F  +++ E+ RG  GVR    +DG  +  +I     E
Sbjct: 655 LGAYLTNGNSQIMIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDGDEAIGMIVVNDVE 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G  ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIA 759



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 83/205 (40%), Gaps = 12/205 (5%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L+ +    +   V+++  G I+     +        ++A+  ++ D L  A   +   +I
Sbjct: 607 LKDSEYVNQMSVVMVTKNGTIKKTSLEAYSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQI 666

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGN 622
           ++ + +GK    P   +         ++ ++  + ++ I    V D     +LVVS KG 
Sbjct: 667 MIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDGDEAIGMIVVNDVENETVLVVSEKGY 726

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
                  +     R GK  + ++  EK   +  +  VT +  + ++ ++   +   +D++
Sbjct: 727 GKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMGMDEM 786

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
             M R  +GV+L + K       I 
Sbjct: 787 RVMGRNTQGVKLINLKKNDEIAAIA 811


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/795 (30%), Positives = 410/795 (51%), Gaps = 55/795 (6%)

Query: 1   MGVDNISNSN---TLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDG 49
           M  +N   +    TL EE         V+ V L   ++  YL YA+S I  RA+PD+RDG
Sbjct: 1   MADENTPETPESVTLEEEVTVPGVGMRVEPVQLETEMQRSYLDYAMSVIVSRALPDVRDG 60

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R 
Sbjct: 61  LKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRM 120

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           PL+   GNFG+   D AAA RYTE +M  ++  +++ +DE+ VDF+D Y+  + EP V P
Sbjct: 121 PLVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLP 180

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPD 225
           ++FPNLL NG++GIAVGMAT+IP HN++E+   A   +++PE S E+    L+E I GPD
Sbjct: 181 ARFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELQDALIERIKGPD 240

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPTG ++V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L +K
Sbjct: 241 FPTGALVV-GRKGIEEAYRTGRGSITMRAVVAVEEI-QGRQCLVVTELPYQTNPDNLAQK 298

Query: 286 IAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           IA+L+   ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM 
Sbjct: 299 IADLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANML 358

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            L  G VP+ + +D  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+I
Sbjct: 359 ALVDG-VPRTLSIDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVI 417

Query: 405 AIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           A+IR  +     +  ++    + E Q +AIL ++LR L  LE  +I +E D L A+  + 
Sbjct: 418 ALIRRSNTVEIAREGLMGLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEY 477

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + +L S  +Q   ++ E+  + E F        RR+        +     + +I +E I 
Sbjct: 478 NEILASPAKQRGIVSEELAAIVEKFGD-----DRRSKLV---PFEGDMSIEDLIAEEDIV 529

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           V IS  G+++          K     +     +E D +     + T   +L  +  G+ Y
Sbjct: 530 VTISRSGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVY 589

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
              A  L        G+ +  L+    ++ I        Y++   L++ +  G       
Sbjct: 590 RAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAVPYLILATKGGLVKKTAL 649

Query: 629 SEIIANTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPE 680
            +  +    G   + +       ++++     V+  D + ++ +  + + F+     +  
Sbjct: 650 KDYDSPRSGGVIAINLREMPDGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRP 709

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGS 738
           M R   GV+  S+++G   +++   +    T++  +    Y +        +  RGG+G 
Sbjct: 710 MGRATSGVKGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGI 767

Query: 739 LVPKGFPRSGKFLSS 753
              K     G  + +
Sbjct: 768 KAAKIVEDRGSLVGA 782



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  ++ +  G ++      
Sbjct: 592 KAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKD 651

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 652 YDSPRSGGVIAINLREMPDGGDDELIGAELVSAEDDLLLISKKAQSIRFTATD-DALRPM 710

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 711 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 770

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G    
Sbjct: 771 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 828

Query: 700 VICFK 704
           V+   
Sbjct: 829 VVGIA 833



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A   P          G  
Sbjct: 707 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLG 766

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 767 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 826

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 827 DAVVGIAR 834


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 409/756 (54%), Gaps = 32/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+ A  + G+  G    KSA
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+GK HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +LQ +D++ VDFR  Y+    EP V P+  PNLL NG SGIAVGMATS+P HN+
Sbjct: 124 SPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A+IDNP I++E+++ ++ GPDFPTGG    SR+ I E+Y  GRG  +VRA+ 
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGG--RLSRKGIKEAYATGRGSLKVRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VEE G     +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +    
Sbjct: 242 RVEEKGS-RPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +P +++  ++  + +++ F +N+  +  G  P+V+ L  +++ +L HR+EV+ RRS
Sbjct: 301 KRGANPQVVLNQLYKHTALQSSFTVNLLAIVEGE-PRVLSLLDLMRHYLDHRKEVVRRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+GLLIA  +IDE+IA+IR  +     +  ++ RF L+E Q  AIL+
Sbjct: 360 LFDLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMERFGLSEAQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E   L+ E  ++ ++L    + W ++  E+  VKE +  +    
Sbjct: 420 MRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDA---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHF 545
            RRT   E      +   + +IE EP+ + ++ +G+++ L   +                
Sbjct: 476 -RRTLLTEFEE---SFNPEDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   D +L+ S  G+ Y L   +L     +  G  ++ L+ L   +++ 
Sbjct: 532 KEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVA 591

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                   +    L+  + +G        E       G   +++   +++  V      D
Sbjct: 592 ALLAVRGLEGEGYLVFATERGLVKRTALKEYANLGTGGLIAIRLLEGDRLVGVALSDPED 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICEGLTWIDSAG 716
              +     + + F ++++    R  +GV    +K     +  ++  K  E +  +  + 
Sbjct: 652 EAILATAEGQAIRFPLEEVRATGRDTQGVVGIRFKKPQDRVVSLVTVKPGEMVDLLSVST 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           R Y +        L  RGG+G +      R G+  +
Sbjct: 712 RGYGKRTPLSEYPLQGRGGMGVITYAVSARVGRLAA 747



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 516 EKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E E   V  + RG ++              L A+   EGD L     +   D  +L + +
Sbjct: 600 EGEGYLVFATERGLVKRTALKEYANLGTGGLIAIRLLEGDRLVGVALSDPEDEAILATAE 659

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVE 627
           G+A   P   + +     + +  +        +V+           LL VS++G      
Sbjct: 660 GQAIRFPLEEVRATGRDTQGVVGIRFKKPQDRVVSLVTVKPGEMVDLLSVSTRGYGKRTP 719

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R G   +  +   +   +  ++KV G + + V+ +    L   + +I + SR
Sbjct: 720 LSEYPLQGRGGMGVITYAVSARVGRLAALLKVRGTEDLLVLSKKGLTLRTPVAEIRQYSR 779

Query: 684 G-KGVRLQSYKDGG 696
              GV++ +  +  
Sbjct: 780 ATAGVKIMNLPEED 793



 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 52/191 (27%), Gaps = 21/191 (10%)

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---KEPITVVISNRGWI 530
            IA  + E   +   +                      + +          V       I
Sbjct: 630 LIAIRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRATGRDTQGVVG------I 683

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R  K     +S +  K G+ +   L   T          GK   L    L    G G  I
Sbjct: 684 RFKKPQDRVVSLVTVKPGEMV-DLLSVSTRGY-------GKRTPLSEYPLQGRGGMG-VI 734

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
              +       +        T  LLV+S KG       +EI   +R   G   + +  E+
Sbjct: 735 TYAVSARVG-RLAALLKVRGTEDLLVLSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEED 793

Query: 649 KMKLVVKVTGD 659
           ++     V  +
Sbjct: 794 EIASAFVVEEE 804


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/764 (36%), Positives = 447/764 (58%), Gaps = 31/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T  +E  + V+LR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MPEFQT-TDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 60  LKSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A+++L  + +   D+   ++    EP + P++ P++L NGT+GIA
Sbjct: 120 SFAAMRYTESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A + L+  P+ ++E+L EYI GPD+PT   I+  R+ +++ Y 
Sbjct: 180 VGMATDIPPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RARW  E        +V+T++P+QV  +R++E+IA+ + AK++P++ D+RDE
Sbjct: 240 TGRGSLRMRARWVNEGGD-----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+NV+     P V  L  +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ +L+GLLIAYLN+DE+I IIR EDKPK  ++ RFS
Sbjct: 355 EWLTFRRATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKPKAELMVRFS 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+ +Q +AIL L+LR L KLEE +I+ E D L  E++ + S+L S K+    I  E+++ 
Sbjct: 415 LSADQAEAILELKLRHLAKLEEMKIRGEQDELAIERDHLQSILGSEKKLRQLIKTELQQD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     +A     ++  +P+TVV+S +GW+R+ K H +D   
Sbjct: 475 AETYGD-----DRRSPIVERGE-SRAFSNIDLVSNDPVTVVLSEKGWVRAAKGHDIDPLG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +  H     +++ L + G+AY L A +L S RG GE +   I+       
Sbjct: 529 LSYKAGDKFSLQAHGRNNQQVIFLDSTGRAYALMAHSLPSARGQGEPLSGHINPPPGAQF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV------ 656
               + DS  K+++V+  G  F     ++++  R GKT + V     +   V V      
Sbjct: 589 CGLLMGDSQRKVVLVTDGGYGFATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPE 648

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICE 707
                ++A V    ++L+F + ++PE+ +GKG +L S        +D  +  V  F   +
Sbjct: 649 SRETLYLAAVSNEGRMLVFPLTELPELVKGKGNKLISIPSARVQSRDEFVVAVAVFAHSD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            L  I +  R  +   +DL  +LG+RG  G  +P+G  R    +
Sbjct: 709 QLE-IHAGKRKMSLQFSDLEHYLGERGRRGHKLPRGLQRVDGIV 751


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/763 (33%), Positives = 414/763 (54%), Gaps = 30/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             TL  E+++ V ++  +E  Y+ YA+S I  RA+PD+RDG KPVHRR++ AM E+G+ +
Sbjct: 3   EETLFPEDIQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAY 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+VIGK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG++DGDSAAA
Sbjct: 63  NKPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+ ++++ +L  ++++ V+F+  Y++   EP + P++ PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  L L+D PE  I ++++ I GPDFPT G  +  ++ I+++YR GRG
Sbjct: 183 TNIPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAG-FITGKQGIIDAYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RAR  +E    G   I+VTEIPYQV KSRL+EKI EL+  KRI  + D+RDES  +
Sbjct: 242 RIRMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDRE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R    + ++  ++  + ME  F +    L     P+V+ L  IL+ ++ HR
Sbjct: 302 GMRIVVEIKRGEHAESILNRLYKFTPMEGTFGVINLALVNNS-PRVLNLKEILEYFIEHR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           RE++  R  F +    ++  IL+GL +A  N+DE+I  IR      + K  +++RF  ++
Sbjct: 361 REIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIARFQFSD 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I  + + +LA  + +  +L +  +  + I  E+ E++E 
Sbjct: 421 EQAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDSRVIDIIRTELHEIREK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT   +          + +I  EP  + ++N G+++              
Sbjct: 481 YADP-----RRTIIIDDHE---EIDLEDLIADEPTVITLTNDGYVKRTPADTYKSQHRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                L  KEGD +       T + +++ +  G+ Y + A N+        G+AI   +D
Sbjct: 533 KGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRGKAIVNFVD 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I T F    +     LL ++  G A     SE     +KG   + +  ++++  
Sbjct: 593 LEKDEKISTVFPVREFSEDKFLLFITKNGIAKKTPLSEYANIRKKGVNAINLDDDDELIQ 652

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEG 708
           V+   G + V V       + F   ++  + R  +GV+  +    D  +S     K  + 
Sbjct: 653 VMHTNGSNSVMVTTRFGASIHFEEQEVRAVGRVSRGVKGITLVNNDYVVSAETISKDIDP 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +      Y +        L  RGG G+L  K   ++G  +
Sbjct: 713 SYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKNGLVV 755



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 84/245 (34%), Gaps = 22/245 (8%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + ++        R          E               ++   + I+  G  +      
Sbjct: 571 KAYNIPEQGRNSRGKAIVNFVDLEKDEKISTVFPVREFSEDKFLLFITKNGIAKKTPLSE 630

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   ++A++  + D L   +H + ++ +++ +  G +       + +       ++
Sbjct: 631 YANIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRAVGRVSRGVK 690

Query: 592 LLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             I L +N  +V+A           +L V+  G        E    +R GK  L + +  
Sbjct: 691 G-ITLVNNDYVVSAETISKDIDPSYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTT 749

Query: 649 KMKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVIC 702
           K  LVV+    V GD + ++ +  K++      I    R  +GV+L    +D  I  V  
Sbjct: 750 KNGLVVRGLQVVDGDEILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVAV 809

Query: 703 FKICE 707
            K  +
Sbjct: 810 AKTDD 814


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/763 (31%), Positives = 398/763 (52%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP+V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R  I E+YR GR  
Sbjct: 187 NLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRGIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L   + P+V+ L  +L+E+L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQ-PKVLNLHQMLEEYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR   N    K  ++ RF L++ 
Sbjct: 365 EVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+ E++ ++L   K+    I  EI  + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADEKKLLTVIRDEIMIISDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        D     + +I  E   + +++ G+I+               
Sbjct: 485 GD-----DRRTAI----GYDDDMSMEDLIPDEDTIIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        ++    L + +  G        E     + G   + +   +++  V
Sbjct: 596 MPEEKITAIIPMREFNDDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLRDGDELIEV 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V      + F+   +    R   GV    ++D    +VI  ++  +G +
Sbjct: 656 KATDNSQDILLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEDD--DEVIGMQMQSQGDS 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G +  K   ++G  + +
Sbjct: 714 LLVVSENGMGKRTMITEFSAQNRGGKGVICYKCTDKTGYLVGA 756


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 417/760 (54%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+ +++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIIDYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     ++R  IL+GLLIA  ++D++I+IIRN +     +  ++SRF+L+E Q 
Sbjct: 359 IVRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSRFNLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E D+LLA    +  +L    +    I  E+ E+K  +  
Sbjct: 419 QAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMDEIKRKYVD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          +     +
Sbjct: 479 P-----RRTELMVGEV--LSIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +  +T D +  ++  G+ Y L    +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + + T        ++   L  V+ +G     +ESE     + G   L +   +++  V+
Sbjct: 592 GETVQTIISEKGNDETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKESDELINVI 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           +  GD   ++G      + F+   +  MSR   GVR  + ++G    V   +I      +
Sbjct: 652 RTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRGVNLREGD-EVVGASRITNDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++GK   
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKNGKLAG 750



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 12/220 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E         ++   E E     ++ +G ++  K           L AL+ KE D L 
Sbjct: 589 LDEGETVQTIISEKGNDETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKESDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +  +  D I++ +  G +      ++ S       ++  ++L    ++V A    +  
Sbjct: 649 NVIRTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRG-VNLREGDEVVGASRITNDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       SE     R GK    V       K+  +V V GD  + V+ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKNGKLAGLVTVNGDEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    +      +     E
Sbjct: 768 VMIRTNVADISQTGRATLGVKIMRLDENAKIMTLALVQAE 807



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 85/250 (34%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492
           R+  L+  E  +       L      +   L+ G+     I+ +  +  E +    +   
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLP--IVNLLK-LDEGETVQTIISEKGNDETENYLFFVTRQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E S   +  L+   +++            +   ++ +  G+        +RS
Sbjct: 619 VVKRTKESEFSNIRQNGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRS 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+ 
Sbjct: 679 MSRSATGVRGVNLREGDEVVGASRITNDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
           +     N  +      +    ++V++  G       ++I    R   G   +++    K+
Sbjct: 739 VNITKKNGKLAGLVTVNGDEDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDENAKI 798

Query: 651 KLVVKVTGDH 660
             +  V  + 
Sbjct: 799 MTLALVQAEE 808


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KR+  +  +RDES  +   
Sbjct: 245 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 305 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 364 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFRLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILVKPERVAQIIKEELDEVKRKF-- 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G +R T   V         + +IE+  + + +SN+G+I+          K     +
Sbjct: 482 ----GDKRRTELMVGEV-LTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 537 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 596

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 597 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 656

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GVR  + ++G    V    I +    +
Sbjct: 657 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLREGDTV-VGASVITDQDEVL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 716 IITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKNGPLAG 755



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 83/240 (34%), Gaps = 20/240 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 594 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 653

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 654 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRG-VNLREGDTVVGASVITDQD 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 713 EVLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            ++  ++  I +  R   GV++        + ++ F      T + +A +   R+E +  
Sbjct: 773 VMIRTNVANISQTGRSTMGVKVMRL--DQDAKIVTF------TTVAAAEKEEVRTEIETE 824



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 567 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 618

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 619 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 678

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 679 SAVRGMSRIATGVRGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTLATEYPTKCRGG 738

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 739 KGMKTANVAEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 798

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 799 QDAKIVTFTTVAAAEKEEV 817


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/770 (34%), Positives = 418/770 (54%), Gaps = 34/770 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N +  +  N+K+  +   ++  Y+ YA+S I  RA+PD+RDG KP+HRR+++ M+EMGL 
Sbjct: 6   NQSVDLFGNIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLK 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  +FKKSAR+VG+V+GK HPHGD ++YDSLVRLAQ F  R  L+ GQGNFG++DGD AA
Sbjct: 66  YNKSFKKSARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R+ ++A+ +L  +D++ V F D Y+    EP V P+K PNLL NG+SGIAVGM
Sbjct: 126 AMRYTEVRLERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+HN+ E+C+A + +I NP ++ ++L+  I GPDFPTG II   R+ I + +  G+
Sbjct: 186 ATNIPTHNLSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIIC-GRKGIFDYFETGK 244

Query: 248 GGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           G  +V+AR  +EE GR G   IVVTEIPYQV K+ LIE IA L+  K++  + DIRDES 
Sbjct: 245 GSVKVQARAEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESD 304

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R  D  +++  ++  + ++T F +NM  +  G  P+++P+  ++K ++ 
Sbjct: 305 RRGMRLVIEVKRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDG-RPRILPIKEVMKCYVK 363

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423
           HR+EV+  R+ F +    +R  IL+GLLIA  N+D++I IIR    P   K  ++  F+L
Sbjct: 364 HRKEVVTARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIREFAL 423

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL  L +L    I+ E   LLA   ++  +L   ++    I  E++ +K
Sbjct: 424 SEPQSQAILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDPQKVLAIIVDELKGLK 483

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           +      D G  R T    +        + +IE+E + + +SN G+         R+   
Sbjct: 484 K------DYGTERKTEISNTEL-SDMTMEDLIEEEDVVITLSNDGYAKRIPLDTYRTQNR 536

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +     KE D ++      T   IL+ +T G+ ++L A  +  G     G+AI  L
Sbjct: 537 GGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLSKGKAIVNL 596

Query: 594 IDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           + +++ + I +A   +           L + +  G    VE  +     + G   + +  
Sbjct: 597 LQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSGIIAIGLED 656

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV-IC 702
            + +  V    G   + +   + K + F  +QI  M R  KGVR     KD  +  +   
Sbjct: 657 GDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMGRQAKGVRGIRLGKDDIVVGMEHA 716

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            K   G   +      Y +           RGG G++  K   R+GK + 
Sbjct: 717 LKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERNGKVVG 766



 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 498 TFCEVSRADKATLQQAMIEK---EPITVVISNRGWIRSLKSHSV------DLSALHFKEG 548
                 +   A   +    K   E    + +  G I+ ++           + A+  ++G
Sbjct: 598 QISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSGIIAIGLEDG 657

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV---TA 605
           D L      H    +++ + DGKA       + +     + ++  I L  +  +V    A
Sbjct: 658 DVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMGRQAKGVRG-IRLGKDDIVVGMEHA 716

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHV 661
                   +L V   G     E +E     R G   + + + E+   VV +        +
Sbjct: 717 LKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERNGKVVGIKLVDESKDL 776

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            V+ EN   +    ++I  + R  +GVRL    +      I   I + 
Sbjct: 777 MVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARIAPVIKDN 824


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/827 (32%), Positives = 406/827 (49%), Gaps = 101/827 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N +IS+E+L+ YI GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K++LIEKIAEL+  K+I  +  I D S +    ++ 
Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L  G+ P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------- 417
           R+ F ++    R  IL+GL IA  NID +I +IR     +                    
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423

Query: 418 --------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  VK  F+       RRT   E++ A      + +I +
Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVR 715

Query: 680 EMSR-GKGVRLQSY--------------------------------KDGGISDVICFKIC 706
            M R   GVR                                    KD  +S VI     
Sbjct: 716 AMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEG 775

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + LT        Y +        +  R   G +  K   R+GK +++
Sbjct: 776 DILTV---TQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 42/219 (19%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGR 705

Query: 572 AYTLPAGNLLSGRGHGEAIQLL------------------------------IDLNHNQD 601
                   + +       ++ +                              + L+ +  
Sbjct: 706 VVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKD-R 764

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVT 657
           +V+  +  +   +L V+  G       SE    +R  K  + +   E+    +  V    
Sbjct: 765 VVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEE 824

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            D + ++ +   L+   + ++  + R  +GVR+    + 
Sbjct: 825 TDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAED 863


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 401/763 (52%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E S+E+++E + GPDFPTG  I+  R SI E+YR GR  
Sbjct: 187 NLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRSIEEAYRTGRAK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  K+I  +  I DES  + 
Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  +   + ++  F + M  L   + P+V+ L  +L E+L H+ 
Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQ-PKVLNLHQMLDEYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  ILKGLLIA  +IDE+I IIR        K  ++ RF L++ 
Sbjct: 365 EVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMERFGLSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   LLA+ E++ ++L   K+    I  EI+ + + +
Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILADVKKLLTVIKEEIQIIADKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        D     + +I  E   + +++ G+I+               
Sbjct: 485 GD-----DRRTAI----GYDDDVSMEDLIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++  L       ++  +  G+ Y L A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAGRTARGTAIINLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+    L + +  G        E     + G   + +  ++++  V
Sbjct: 596 QPDEKITAIIPMREYNEDKYLFMATRNGMVKKTPMVEYEHVRKNGLQAIVLREDDELIEV 655

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                +  + +V      + F+   +    R   GV    +++    +VI  ++  +G +
Sbjct: 656 KATDNNQDIFLVTRKGMCIRFNETDVRVTGRVSMGVIGMRFEED--DEVIGMQMESQGES 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G +  K   ++G  + +
Sbjct: 714 LLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTEKTGNIVGA 756


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/788 (32%), Positives = 410/788 (52%), Gaps = 48/788 (6%)

Query: 1   MGVDNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +N   +   + E     ++AV L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADENNPTTPDELAEGAAMRIEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQ +  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE +M  +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+ E A   + NPE + E+LL    + I GPDFPTG ++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALV 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+  
Sbjct: 241 V-GRKGIEEAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKD 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G V
Sbjct: 299 ARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-V 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE- 410
           P+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR   
Sbjct: 358 PRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSD 417

Query: 411 --DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             D  +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S 
Sbjct: 418 TVDTARGGLMELLEIDEIQANAILEMQLRRLAALERQKITQEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q   I+ E+  + E F        RR+        D     + +I +E I V I+  G
Sbjct: 478 ERQRQIISEELTALVEKFGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTITRGG 529

Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +         RS K     +     K+ D +     + T   +L  +  G+ Y   A  L
Sbjct: 530 YLKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYEL 589

Query: 581 L--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L+    ++ I        YD+   L++ +  G        +  +  
Sbjct: 590 PDAGREARGQHVANLLAFQPDEQIARILAIRDYDAVPYLVLATKSGLVKKTPLKDYDSPR 649

Query: 636 RKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-G 686
             G   + +       E+++     V+  D + ++ +  + + F+     +  M R   G
Sbjct: 650 SGGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGRATSG 709

Query: 687 VRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           V+  S+++    +++   +    T++  +    Y +  N     +  RGG+G    K   
Sbjct: 710 VKGMSFRED--DELLSMNVVRPGTFVFTATDGGYAKRSNVDEYRVQGRGGLGIKAAKIVE 767

Query: 746 RSGKFLSS 753
             G  + +
Sbjct: 768 DRGSLVGA 775



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 21/204 (10%)

Query: 519 PITVVISNRGWIRSLKSHSVD------LSALHFKE-----GDSLKIALHAHTTDRILLLS 567
           P  V+ +  G ++       D      + A++ +E      D L  A      D +LL+S
Sbjct: 626 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMEDGREDELIGAELVSADDDLLLIS 685

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
              ++    A +  S R  G A   +  +    + ++++  V      +   +  G A  
Sbjct: 686 KKAQSIRFTATD-ESLRPMGRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKR 744

Query: 626 VEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
               E     R G   K    V     +   + V   D +  +     ++   + ++ E 
Sbjct: 745 SNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDEILAITLGGGVIRTRVSEVRET 804

Query: 682 SR-GKGVRLQSYKDGGISDVICFK 704
            R   GV+L +   G    V+   
Sbjct: 805 GRDTMGVQLINL--GKRDAVVGIA 826



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+E D L           +   +  G A              G  
Sbjct: 700 LRPMGRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRSNVDEYRVQGRGGLG 759

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + + ++L ++  G       SE+    R   G   + +   
Sbjct: 760 IKAAKIVEDRGSLVGALVVEESDEILAITLGGGVIRTRVSEVRETGRDTMGVQLINLGKR 819

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 820 DAVVGIAR 827


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/850 (30%), Positives = 420/850 (49%), Gaps = 107/850 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +   + S  +  +  ++K VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 5   LADQDNSTPSGGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 64

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 65  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 124

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG 
Sbjct: 125 VDGDPAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 184

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A++A+++NP +++E+L++ + GPDFPTGG+I+  R  I 
Sbjct: 185 GGIAVGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMIL-GRSGIR 243

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +RA+   EE+ +  W ++VTEIPYQV KS +IEKIAE++  KR+  + D
Sbjct: 244 SAYETGRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISD 303

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   PD+++  ++  S ++T F  NM  L+ G  P+ M L  +
Sbjct: 304 IRDESDRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALN-GGKPEQMNLSDM 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           LK ++A R EV+ RR+ + ++    R  IL GL IA  NIDE+I +IR    P       
Sbjct: 363 LKAFVAFREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQL 422

Query: 418 --------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  +   +I+ EL
Sbjct: 423 MERNWPARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEEL 482

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + + AE      +L S  +    +  E+ E++E F+       RRT   E         +
Sbjct: 483 NKIGAEISDYLDILRSRARIQEIVRNEMLEIREEFATP-----RRTEIIE---GGADFDE 534

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 535 EDLIQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 594

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L  G     G+A+  ++ L   + I +               ++
Sbjct: 595 LFFSSRGICYKMKVWRLPLGGPTSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVM 654

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             + +G     + S+ +   R GK  +K+   + +  V   +    + +   + + + F 
Sbjct: 655 FATVRGTVRRNKLSDFVNINRNGKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFP 714

Query: 675 IDQIPEM-SRGK-GVRLQSYKDG------------------------------------- 695
              +     R   GVR     DG                                     
Sbjct: 715 ATDVRVFAGRNSVGVRGIRLADGDRIISMQILHHIDVDAEERAAYLKLSRAMRGEADENG 774

Query: 696 ---GISDVICFKICE---------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                  V+  ++ +             +  +   Y +  +     +  RGG G      
Sbjct: 775 AAADEDGVVAGELSQERYAEMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAV 834

Query: 744 FPRSGKFLSS 753
             R+G  ++S
Sbjct: 835 NHRNGGLIAS 844



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 78/295 (26%), Gaps = 77/295 (26%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
              T  G+       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 614 GGPTSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLSDFVNI 673

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                 A+  +EGD +           I+L +  G+    PA ++    G        I 
Sbjct: 674 NRNGKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVGVRGIR 733

Query: 596 LNHNQDIVTA-----FVYDSTCK------------------------------------- 613
           L     I++         D+  +                                     
Sbjct: 734 LADGDRIISMQILHHIDVDAEERAAYLKLSRAMRGEADENGAAADEDGVVAGELSQERYA 793

Query: 614 --------LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS-SEEKMKLVVKVTG-DHV 661
                   +L +S  G        E     R  KG T + V+     +     V   D +
Sbjct: 794 EMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRNGGLIASFPVEDSDQI 853

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            +V +  +L+   ++ I    R                VI FK  E    +   G
Sbjct: 854 MLVTDGGQLIRCPVEGIRIAGRAT------------QGVIIFKTAEDEKVVAVEG 896


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 440/749 (58%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  R+R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVEIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  ++ R+ IL+GLL AYLNIDE+I IIRNE+ PK   +SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDPKAEFMSRFGLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I++E D L  E+E+++ LL S ++    I  EI    E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRAEQDELAKEREQLEKLLGSERRLNTLIKKEILADAEKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E     KA  ++ +I  E ITVV+S +GWIR  K H VD S+L++K GDS 
Sbjct: 479 --DRRSPLVEREE-AKALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSSLNYKSGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L +DG++Y L + +L S R  GE I   ++L    ++    + +  
Sbjct: 536 LAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAEDD 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V     +     V  +  D +  +    
Sbjct: 596 QIWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++ +        ++  +S +      +    + +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVIS-ADTHVTLYAGKRKLGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +DL  + G+RG  G+++P+G  R  + 
Sbjct: 715 KPSDLYNFRGERGRRGAMLPRGLQRVTRM 743


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 392/762 (51%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E +I++LL  + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D S  + 
Sbjct: 246 IRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L  G  P+VM L  +L+ +LAH+ 
Sbjct: 306 MRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALV-GNTPKVMSLLEMLEHYLAHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+     + K  ++  F  +E 
Sbjct: 365 EVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDTFGFSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+        I  EI  + E +
Sbjct: 425 QAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSDRNLLLRVIRQEILAIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I KE   + ++  G+I+               
Sbjct: 485 GD-----DRRTAIG---YDEFDISMEDLIPKENTVIAMTKLGYIKRMTVDNFRSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  ++ G+ Y + A  +   S    G AI  L+ L
Sbjct: 537 GIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +     L + +  G        +     + G   + +  ++++  V
Sbjct: 597 QPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIEDYENVRKTGLAAIALREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V +  + + F+   +    R   GVR  +  +    +VI  ++ C+G  
Sbjct: 657 KFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEE--DEVIGMQLTCQGDY 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGNVIG 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      A +     +K     + +  G ++      
Sbjct: 574 KAYEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIED 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           I+L++  G+       ++ S       ++
Sbjct: 634 YENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVR 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L  ++ I           LL+VS KG       SE     R GK        EK  
Sbjct: 694 GINLLEEDEVIGMQLTCQGD-YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTG 752

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V+ V    + + + ++     ++    + I  + R   GV+L   KD      I 
Sbjct: 753 NVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIA 808


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/792 (31%), Positives = 412/792 (52%), Gaps = 52/792 (6%)

Query: 1   MGVDNISNSNTLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           M  +N  ++  +  +         V+ V L   ++  YL YA+S I  RA+PD+RDG KP
Sbjct: 1   MADENNPSTPEIEIDAEGLPLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKP 60

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+
Sbjct: 61  VHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLV 120

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GNFG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++F
Sbjct: 121 DSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARF 180

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPT 228
           PNLL NG++GIAVGMAT+IP HN++E+   A   ++NPE   + LL    E I GPDFPT
Sbjct: 181 PNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEADPDTLLDALIERIKGPDFPT 240

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G ++V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+
Sbjct: 241 GALVV-GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIAD 298

Query: 289 LIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           L+   RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L 
Sbjct: 299 LVKDARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 358

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
            G VP+ + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+I
Sbjct: 359 DG-VPRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALI 417

Query: 408 RNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           R     D  +  ++    + E Q +AIL ++LR L  LE  +I +E D+L A+ ++ +++
Sbjct: 418 RASQTVDVARGGLMELLEIDEIQANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAI 477

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S ++Q   I+ E+  + + F +      RR+        D     + +I +E I V I
Sbjct: 478 LASPERQRQIISEELAAIVDKFGE-----DRRSALV---PFDGDMSIEDLIAEEDIVVTI 529

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +  G+++          K     +     KE D +     + T   +L  +  G+ Y   
Sbjct: 530 TRGGYVKRTKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAK 589

Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
           A  L        G+ +  L+    ++ I        YD+   L++ +  G        + 
Sbjct: 590 AYELPDVGRDARGQHVANLLAFQPDESIAQILAIRDYDAAPYLVLGTKGGLVKKTPLKDY 649

Query: 632 IANTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR 683
            +    G   + +       ++++     V+  D + ++ +  + + F+     +  M R
Sbjct: 650 DSPRSGGVIAINLRETPDGSDDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPMGR 709

Query: 684 GK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GV+  S+++G   +++   +    T++  +    Y +        +  RGG+G    
Sbjct: 710 ATSGVKGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTGVDEYRVQGRGGLGIKAA 767

Query: 742 KGFPRSGKFLSS 753
           K     G+ + +
Sbjct: 768 KIVEDRGELVGA 779



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 704 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTGVDEYRVQGRGGLG 763

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +    ++V A V + T ++L ++  G       +EI    R   G   + +   
Sbjct: 764 IKAAKIVEDRGELVGALVVEETDEILAITLGGGVIRTRVNEIRETGRDTMGVQLINLGKR 823

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 824 DAVVGIAR 831


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/787 (31%), Positives = 408/787 (51%), Gaps = 47/787 (5%)

Query: 1   MGVDNISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N  ++     E    V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++NPE S E+LL    E I GPDFP+G ++V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + +++L S  
Sbjct: 418 VEIAREGLMGLLEIDEIQANAILEMQLRRLAALERQKIIQEHDELQAKITEYNAILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   I+ E+  + E +        RR+        D     + +I +E I V I+  G+
Sbjct: 478 RQRGIISEELAAIVEKYGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTITRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     +     K+ D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 IKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 --SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++   +I+    Y++   L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAVPYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G   +++   +    T++  +    Y +        +  RGG+G    K    
Sbjct: 710 KGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGSLVGA 774



 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 699 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 758

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 759 IKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKR 818

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 819 DAVVGIAR 826


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 438/749 (58%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +I+NP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  ++R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I  EI    E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIKKEILADAEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E     KA  ++ +I  E ITVV+S +GWIR  K H VD S L++K GDS 
Sbjct: 480 ---RRSPLVEREE-AKALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSTLNYKSGDSY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L +DG++Y L + +L S R  GE I   ++L    +I    + +  
Sbjct: 536 LAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNIRQVLMAEDD 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V     +     V  +  D +  +    
Sbjct: 596 QLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++ +        ++  +S +      +    + +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVIS-ADTHVTLYAGKRKLGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +DL  + G+RG  G+++P+G  R  + 
Sbjct: 715 KPSDLDNFRGERGRRGAMLPRGLQRVTRM 743


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/763 (33%), Positives = 412/763 (53%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ +I  PDFPTGGI +   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGI-IYGYDGVKEAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES      V++
Sbjct: 244 KAVIEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G  PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNG-RPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++     +  +L+  +++   I  E+ EVK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDILDRKERRMQIIKDELLEVKDKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPNEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +   S    G AIQ LI++  +  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSRTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +     + G   + +   +++   
Sbjct: 594 VKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPRQNGINAIGIRENDELLEA 653

Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT- 710
              TG     +G ++ K + F   +   M R   GVR     D    +VI          
Sbjct: 654 KLTTGTSEIFLGLKSGKAIRFEESKTRPMGRNASGVRGIRLADDN-DEVIGMVSVNNFED 712

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  N     +  RGG G        ++G  +S
Sbjct: 713 NILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITEKTGGLVS 755



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 14/219 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            L+          ++ + +G ++              ++A+  +E D L  A     T  
Sbjct: 602 DLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPRQNGINAIGIRENDELLEAKLTTGTSE 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           I L    GKA           GR       + +  ++++ I    V +    +LVVS  G
Sbjct: 662 IFLGLKSGKAIRFEESKTRPMGRNASGVRGIRLADDNDEVIGMVSVNNFEDNILVVSENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ 677
                   +     R GK    +S  EK   +V +      D + ++ ++   +  S++ 
Sbjct: 722 YGKRSNIDDYRVTNRGGKGVKTISITEKTGGLVSIKNVSDADDLMIINKSGIAIRMSVED 781

Query: 678 IPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWID 713
           +  M R   GV+L + K  D   +     K  + +  +D
Sbjct: 782 LRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEEVD 820


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 416/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+NP I I++L+ +I  PDFPTGG+I    E + E++  GRG   VRA
Sbjct: 185 NLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIF-GYEGVKEAFHTGRGRVVVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KAIIEEV-QGKECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ + +  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNG-RPQQLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I +IR     D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++++A    +  +L   +++ + I  E++EVK  +  +  
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYNDIIATIADLKDILGDKERRMSIIKEELQEVKTKYGDA-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A  +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINYAGGSLSIEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +   S    G AIQ LI+++    
Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSRTSKGRAIQNLINISQEDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +       G   + V   +++   
Sbjct: 594 VKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPRTNGINAIGVREGDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
              TG   V +  ++ K + F   +   M RG  GVR  S  +     +    +  E   
Sbjct: 654 KLTTGTSQVFLGLKSGKAIRFEESKTRPMGRGASGVRGVSLANDQDEVIGMITVHNEEDH 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITEKTGGLVA 755



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       +S+ DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSRTSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQL 592
                 ++A+  +EGD L  A     T ++ L    GKA           GRG      +
Sbjct: 633 RPRTNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPMGRGASGVRGV 692

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +  + ++ I    V++    +LVVS KG        +     R GK    +S  EK   
Sbjct: 693 SLANDQDEVIGMITVHNEEDHILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITEKTGG 752

Query: 653 VVK----VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +V        D + ++ ++   +   ++ +  M R   GV+L + ++      +   + E
Sbjct: 753 LVAIKNVTDSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKE 812

Query: 708 GLTWIDSAG 716
               I S G
Sbjct: 813 EEEEILSDG 821


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/746 (35%), Positives = 406/746 (54%), Gaps = 32/746 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL YA+S I  RA+PD+RDG KPVHRR+++AM EMGL     +KKSAR+VG+VIGK 
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKF 77

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFG++DGDSAAA RYTE RM ++ + +L  
Sbjct: 78  HPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLD 137

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y+    EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A +  
Sbjct: 138 IDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHR 197

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           IDNPE +++ +L++I GPDFPT GI++     +  +Y  GRG  ++RAR  ++++  G  
Sbjct: 198 IDNPESTLDDILKFIKGPDFPTAGILM-GVSDLKTAYLTGRGAIKIRARAEIQQLKSGKE 256

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TEIPYQV KS LIEKIAEL+  K I  + ++RDES  D   V+    +   PD+++
Sbjct: 257 QIVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGELPDVIL 316

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  + ME  F +N   L  G  PQ +PL  IL E++ HR  ++ RR+ F ++  + R
Sbjct: 317 NQLYKFTQMEVTFGINTVALVNG-RPQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEER 375

Query: 387 VEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + IL+GL  A  NIDE+IAII+      + K  ++ RFS ++ QV AIL+++L+ L  LE
Sbjct: 376 LHILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDRFSFSDLQVSAILDMKLQKLTGLE 435

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  E    L   E   S+LN+ +     I  E+ E+K+ ++       RRT   E+ 
Sbjct: 436 IEKLVEEYKETLKNIEYYKSILNNHQILMGIIKDELLEIKDKYADK-----RRT---EIV 487

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                   + +I    + V I+N+G+I+          K      SA   K  D ++  +
Sbjct: 488 YDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGKSATLSKGEDFIETLI 547

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---YDS 610
                 ++L  +  GK + L    L        G  I  L+  +  + I +       D 
Sbjct: 548 VTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFSQGEYIASVVTLSDLDH 607

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTGDHVAVVGENRK 669
              + + +  G        E  +  R G   +K+   +++   V+    D++ +   N K
Sbjct: 608 DKYIFMCTKYGIVKKTAVEEFKS-GRSGIVAMKLRENDELVSTVITTDNDNITIATRNGK 666

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLL 727
            + F   ++ +M R   GVR  + ++     V+  ++  G    +      Y +      
Sbjct: 667 TIQFESKEVRDMGRTATGVRGITLEEDDY--VVSMEVLTGAPFILTVTSNGYGKCSLVSD 724

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  RGG G  + K  P++G  + +
Sbjct: 725 YRIQSRGGKGLKLSKVTPKTGPIVGA 750



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 12/217 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFKEGDSLK 552
           +F +            +   + I  + +  G ++       KS    + A+  +E D L 
Sbjct: 589 SFSQGEYIASVVTLSDLDHDKYI-FMCTKYGIVKKTAVEEFKSGRSGIVAMKLRENDELV 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +     D I + + +GK     +  +         ++  I L  +  +V+  V     
Sbjct: 648 STVITTDNDNITIATRNGKTIQFESKEVRDMGRTATGVRG-ITLEEDDYVVSMEVLTGAP 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +L V+S G       S+    +R GK      +   +   +        D V ++ +  
Sbjct: 707 FILTVTSNGYGKCSLVSDYRIQSRGGKGLKLSKVTPKTGPIVGAKQVKLEDDVMLMSKTG 766

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           K++  ++  IP + R  +GV+L S  D  I      K
Sbjct: 767 KIIRIAVSDIPVLGRDTQGVKLMSVADDEIVSFAIVK 803


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/824 (31%), Positives = 407/824 (49%), Gaps = 95/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G      + K
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I ++YR GRG   VRA
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGIEDAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S +    ++ 
Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
               +   ++++ +++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ R
Sbjct: 305 EIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQIIEAFVMHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR----------- 420
           R+ F ++    R  IL+GL IA  NID +I +IRN    D+ +  ++ R           
Sbjct: 364 RTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E+Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +LNS ++    I  E+ ++K  F        RRT   E++ A      + +I +
Sbjct: 484 ISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSC 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVR 715

Query: 680 EMSR-GKGVRLQSY-------KDGGISD---------------------VICFKICEGL- 709
            M R   GVR            D    D                     V+   I     
Sbjct: 716 GMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQG 775

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +        +  R   G +  K   R+GK +++
Sbjct: 776 EILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 81/242 (33%), Gaps = 43/242 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L      +    I+L S  G+
Sbjct: 646 DKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGR 705

Query: 572 AYTLPAGNLLSGRGHGEAIQLL------IDLNHNQDI----------------------- 602
                   +         ++ +      I ++  +++                       
Sbjct: 706 VVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKV 765

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTG 658
           V+  +  +  ++L V+  G        E    +R  K  + +   E+    +  V     
Sbjct: 766 VSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEN 825

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDV--ICFKICEGLTWIDS 714
           D + ++ +   L+   ++++  + R  +GVR+    +D  +  +  IC    +G+  +  
Sbjct: 826 DQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSV 885

Query: 715 AG 716
             
Sbjct: 886 EE 887


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGM T+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT              + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 -----QRRTELMVGEVWSLED--EDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   +  G        E     + G   L +  E+++  V+
Sbjct: 592 GESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               D   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASVITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSG 750



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 589 LDEGESIQTIINVESERSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L       I++ +  G A       +         ++  ++L     +V A V     
Sbjct: 649 NVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASVITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK     +  EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I         E         
Sbjct: 768 VMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 40/259 (15%)

Query: 435 RLRSLRKLEEYQIKSELDNL-------LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           R+  L+  E  +       L       L E E I +++N        +  E  +   +F 
Sbjct: 562 RVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIIN--------VESERSDDAYLFF 613

Query: 488 KSTDLGRRRTTFCEVSR------------ADKATLQQAMIEKEPITVVISNRGW------ 529
            +     +RT+  E +              +   +   + E++   ++ +  G+      
Sbjct: 614 TTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQ 673

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G
Sbjct: 674 SAVRGMSRIATGVKGVNLREGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGG 733

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + ++       N  +           L++++  G       + I    R   G   +++ 
Sbjct: 734 KGMKTANVAEKNGPLSGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLD 793

Query: 646 SEEKMK---LVVKVTGDHV 661
            + K+     V     + V
Sbjct: 794 QDAKIVTFTTVAAAEKEEV 812


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/753 (35%), Positives = 449/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   SDLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P   ++ LL ++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES + 
Sbjct: 242 SVRMRAVWNKED-----NSAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDQQ 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWL 
Sbjct: 297 NPTRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGLVEILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR ++R++ + +R+ IL+GLL+A+LNID++I IIR+ED+PKPV++  F +++ 
Sbjct: 357 YRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPVLMQSFGISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE++I+ E D L+ E++++ +LL S ++    +  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEFKIRGEQDALVKERDQLQALLASERKLNILLKKEIQADAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  +   +  EP+T+V+S  GW+RS K H ++   L +K
Sbjct: 477 GD-----DRRSPIIERAE-AKAMNEHDFVPSEPVTIVLSEMGWVRSAKGHDIEPGGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRSAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  FI   ++++A  R GK  + +  + K+   +++ G+   +  +
Sbjct: 591 MAPDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++       +T +    R
Sbjct: 651 TAAGRILMFPVTDLPQLSKGKGNKIVSIPATQAATGEDKLAWLLVLPPQTSIT-LHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+ +P+G  R  + 
Sbjct: 710 KLTLRPEDLQKFRAERGRKGTQLPRGLQRIDRV 742


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 402/769 (52%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 26  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 85

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 86  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 145

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 146 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 205

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 206 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 264

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 265 MRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 324 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 383 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 442

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 443 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 502

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 503 D-----DRRSQLV---PFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 554

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 555 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 614

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 615 PDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDE 674

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 675 LIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFREG--DELLSMNV 732

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 733 VRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 781



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  ++ +  G ++      
Sbjct: 591 KAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKD 650

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 651 YDSPRSGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATD-DALRPM 709

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 710 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 769

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G    
Sbjct: 770 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 827

Query: 700 VICFK 704
           V+   
Sbjct: 828 VVGIA 832



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A   P          G  
Sbjct: 706 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLG 765

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 766 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 825

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 826 DAVVGIAR 833


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/837 (30%), Positives = 419/837 (50%), Gaps = 110/837 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L + YL YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDN +I++++L+++I GPDFPT G+ +  R+ I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGL-INGRQGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  +E++ +  G   IVVTE+PYQ+ K+RLIEKIAEL+  K+I  + ++RDES +D   +
Sbjct: 245 RSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDG-RPRLLNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQV 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL+LRL  L  LE  ++ +E   +L
Sbjct: 424 MVERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +L+S ++    I  E+  ++  +  +     RRT   E+  A        MI
Sbjct: 484 EQIGELIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILDARHDLNYGDMI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D ++  L A++   +LL S
Sbjct: 536 PEEERVVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L   ++   S    G  +  L+ L   + I      D                
Sbjct: 596 SKGKVYWLKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELED 655

Query: 610 ------------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                                         +   + + ++ G        +       G 
Sbjct: 656 GDDGVIEGELVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGL 715

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             LK+   + +       G   V +  +  K++ F+   + EM R  +GVR      G  
Sbjct: 716 IALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRTARGVRGMKL--GKG 773

Query: 698 SDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +I   I E G   + ++ R + +           RGG G +      R+G    +
Sbjct: 774 QRIISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGA 830



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 20/250 (8%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ--------AMIE 516
           L  G++    +  ++  +++      +L        E    +     +        A   
Sbjct: 626 LEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIEGELVEVEEADEEDGDTPEWAAEP 685

Query: 517 KEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 + +  G ++        +  S  L AL  KEGD+L  A        +++ S  G
Sbjct: 686 TGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAG 745

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           K        +         ++ +  L   Q I++  + +S  ++L  S +G       S+
Sbjct: 746 KVIRFAESVVREMGRTARGVRGM-KLGKGQRIISMLIPESGAQILTASERGFGKRTPLSK 804

Query: 631 IIANTR--KGKTFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  +G   +       +    +    G+ + ++ +   L+   + ++  + R  +
Sbjct: 805 FPRRGRGGQGVIAMGTKGRNGLLTGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLGRNTQ 864

Query: 686 GVRLQSYKDG 695
           GV L      
Sbjct: 865 GVTLIKLAAD 874


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/762 (30%), Positives = 392/762 (51%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L+  +EE Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ +DF   ++  + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++EI  A + +IDN      E +I++LL  + GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DI D S  + 
Sbjct: 246 IRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  + ++++  ++  + M+  F + M  L  G  P+VM L  +L+ +LAH+ 
Sbjct: 306 MRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALV-GNTPKVMSLLEMLEHYLAHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  I+ GLL A   ID+II IIR+     + K  ++  F  +E 
Sbjct: 365 EVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDTFDFSEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q   I+N+RL  L  +E  +++ E   L  +  ++ ++L+        I  EI  + E +
Sbjct: 425 QAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSDRNLLLRVIRQEILAIAEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I KE   + ++  G+I+               
Sbjct: 485 GD-----DRRTAIG---YDEFDISMEDLIPKENTVIAMTKLGYIKRMTVDNFRSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D ++  L   T   ++  ++ G+ Y + A  +   S    G AI  L+ L
Sbjct: 537 GIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        +     L + +  G        +     + G   + +  ++++  V
Sbjct: 597 QPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIEDYENVRKTGLAAIALREDDELIEV 656

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V +  + + F+   +    R   GVR  +  +    +VI  ++ C+G  
Sbjct: 657 KFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVRGINLLEE--DEVIGMQLTCQGDY 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +  +        RGG G    K   ++G  + 
Sbjct: 715 LLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTGNVIG 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T        +      A +     +K     + +  G ++      
Sbjct: 574 KAYEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFKKGNYLFMATKNGLVKKTPIED 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           I+L++  G+       ++ S       ++
Sbjct: 634 YENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRSTGRVSMGVR 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  L  ++ I           LL+VS KG       SE     R GK        EK  
Sbjct: 694 GINLLEEDEVIGMQLTCQGD-YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITEKTG 752

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            V+ V    + + + ++     ++    + I  + R   GV+L   KD      I 
Sbjct: 753 NVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIA 808


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/778 (30%), Positives = 395/778 (50%), Gaps = 38/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D      TL +  +  + L   +   Y+ YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 1   MSDDTNGGGETLFD-RITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSAR V E +G  HPHGD ++YD+L R+AQP+  RYPL+ GQGNFG+
Sbjct: 60  MYDNGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE R+T +A  +++ + E+ V+F   Y+ +  EP V PS+ PNLL NG+
Sbjct: 120 RGNDGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESR 236
           SGIAVGMAT+IP HN+ E+ EA   L++NPE       E  ++ + GPDFPT G+IV   
Sbjct: 180 SGIAVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIV-GD 238

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++Y  GRG  R+R +  +EE G     I++TE+PY V    L+  IAE +   +I 
Sbjct: 239 QGIKDAYTTGRGSIRMRGKSTIEEEGS-RQIIIITELPYMVNPDNLVSSIAEQVRDGKIA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +    VP+ +
Sbjct: 298 GIAKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVD-SVPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L+ ++ H+ EV+ RR+ FR+   ++R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  +     + + Q DAIL ++LR L  LE  +I  EL  +      + ++L S ++Q 
Sbjct: 417 AREGLKDLLDIDDIQADAILAMQLRRLAALERQKIIDELAEIEETIADLKAILASPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ E F        RRT   E+  A     ++ +I +E + V I++ G+   
Sbjct: 477 AIVRDELTEIVEKFGDE-----RRT---EIVGATGDVSEEDLIARENVVVTITSTGYAKR 528

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS +     +     K+ D ++      T D I+ L+  G+ Y L A  L   S
Sbjct: 529 TKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEAS 588

Query: 583 GRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    +   +I+    ++    L++ + +G       ++       G 
Sbjct: 589 RTARGQHVANLLEFQPGEQIAEIIQIQSFEDAPYLVLATQQGRVKKSRLTDYDTARSGGL 648

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +K+      TG D + +V E  + L F+ D   +  M R   GV+   ++  
Sbjct: 649 IAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPMGRATAGVKGMRFRGE 708

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +    + ++G  Y +        +  RG +G +  K  P+ GK + +
Sbjct: 709 DQLLALTVVHDDSCLLVATSG-GYGKRTPMEEYPVKGRGTMGVVTFKYDPKRGKLIGA 765



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 91/263 (34%), Gaps = 21/263 (7%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK--ATLQQAMIEK 517
            I   L +  + +   A E+ E     +  T  G+      E    ++    +Q    E 
Sbjct: 565 DIIMFLTNYGRVYRLKAYELPE-----ASRTARGQHVANLLEFQPGEQIAEIIQIQSFED 619

Query: 518 EPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            P  V+ + +G ++  +    D +      A++  EGD L  A      D +LL+S +G+
Sbjct: 620 APYLVLATQQGRVKKSRLTDYDTARSGGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQ 679

Query: 572 AYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           A    A +  + R  G A   +  +       ++   V      LLV +S G        
Sbjct: 680 ALRFTADD-DTLRPMGRATAGVKGMRFRGEDQLLALTVVHDDSCLLVATSGGYGKRTPME 738

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R     +    + K    +  V     D +  V     ++   + QI + SR  
Sbjct: 739 EYPVKGRGTMGVVTFKYDPKRGKLIGAVTVTEDDEIFAVTSAGGIIRTEVGQIRKTSRAT 798

Query: 686 -GVRLQSYKDGGISDVICFKICE 707
            GVRL     G     I   + +
Sbjct: 799 MGVRLVDLAKGVELLAIDRNVED 821


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/746 (33%), Positives = 403/746 (54%), Gaps = 29/746 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++    R +   ++
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+ RR+ F     + 
Sbjct: 300 LNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR     D+ K  M+ RF L++ Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I+SE   LL     +  +L + ++    I  E++E+ + F        RRT     
Sbjct: 419 ERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGD-----DRRTELLVG 473

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
                +   + +IE+E I + ++N G+I+          +     +  +   + D +K  
Sbjct: 474 EV--LSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTL 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
           +   T D +L  +  GK Y      +        G  +  L+ ++ ++ I          
Sbjct: 532 VSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSSERIEAIISASGGP 591

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN- 667
                L   +  G       +        G   + +   +++  V++  G+ V ++G + 
Sbjct: 592 QEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIETHGEDVVIIGTHD 651

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
              + F    + +M R   GVR    +DG    V    I E    +      Y +     
Sbjct: 652 GYSVTFKEALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLVITENGYGKRTKGS 710

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  RGG G        ++G    
Sbjct: 711 EYPIKGRGGKGIKTANITAKNGPLAG 736



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 500 CEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
            + S   +A +  +   +E       +  G ++     +        L A+  +E D L 
Sbjct: 575 IDSSERIEAIISASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELV 634

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  H  D +++ + DG + T     +   R  G     +  I L     +V A V   
Sbjct: 635 NVIETHGEDVVIIGTHDGYSVTFKEALV---RDMGRTAAGVRGIRLRDGDYVVGAAVITE 691

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
             ++LV++  G     + SE     R GK      +   +     L      + + V+ +
Sbjct: 692 DSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITD 751

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
              L+ F++  + +  R   GVRL   ++   + V+     E
Sbjct: 752 KGVLIRFNVATVSQTGRATLGVRLMKMENN--AKVVTMATVE 791


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF++ Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NPE++   L+E I GPDFPTG +++  R  I  +Y  GRG   
Sbjct: 181 PPHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGRGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYILHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIR        +  ++ RF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L+  ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDALIALIADLADILSKPERVQTIIIEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +SN G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNMGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDD 591

Query: 599 NQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T      V  +       +  G       SE     + G   L +  ++++  V+
Sbjct: 592 GETIQTIINARKVEVADKYFFFTTKGGVVKRTSASEFNNIRQNGLRALNLKEDDELINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G + + +   +   + F+   I  M R   GVR    +D  +  V   +I +    +
Sbjct: 652 LTDGTEDIIIGTRSGYSVRFNESSIRNMGRSATGVRGVKLRDEDMV-VGASRITDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G        ++G    
Sbjct: 711 IITENGYGKRTAASEYPTKGRGGKGIKTANITAKNGPLAG 750



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 18/197 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              +  G ++   +          L AL+ KE D L   L    T+ I++ +  G  Y++
Sbjct: 612 FFTTKGGVVKRTSASEFNNIRQNGLRALNLKEDDELINVLLTDGTEDIIIGTRSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L     +V A       ++L+++  G       SE   
Sbjct: 670 RFNE-SSIRNMGRSATGVRGVKLRDEDMVVGASRITDDQEVLIITENGYGKRTAASEYPT 728

Query: 634 NTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK      +   +     L      + + ++     ++  SI  + +  R   GVR
Sbjct: 729 KGRGGKGIKTANITAKNGPLAGLTTVSGDEDMMIITNKGVIIRTSISNVSQTGRATLGVR 788

Query: 689 LQSYKDGGISDVICFKI 705
           +        S ++ F +
Sbjct: 789 VMRL--DQDSKIVTFAL 803


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/753 (37%), Positives = 445/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A LALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E 
Sbjct: 357 FRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +  S L +K
Sbjct: 477 GD-----DRRSPLTERGE-AKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIAPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +   + KLL+ S  G  F+   ++++A  R GKT + +    K+   +++ G  D +  +
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +PE+S+GKG ++ S         +  ++ +        +T +    R
Sbjct: 651 TAVGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSIT-LHFGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  GS +P+G  R  + 
Sbjct: 710 KLTLRPEDLQKFRAERGRKGSPLPRGLQRIDRI 742


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/746 (33%), Positives = 404/746 (54%), Gaps = 29/746 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + E ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+  Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+  A   
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L++NPE++  +L+E + GPDFPTGGI++  +  I  +Y  G+G   VR +  V E+  G 
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PY V K++LIE+I+EL   KRI  + D+RDES+ +   ++    R +   ++
Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++ ++ +++ F  NM  +  G VP+++ L  IL+ ++ H++EV+ RR+ F     + 
Sbjct: 300 LNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  +IDEIIA+IR+    D+ K  M+ RF L++ Q  AIL++RLR L  L
Sbjct: 359 RAHILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I++E   LL     +  +L + ++    I  E++E+ + F        RRT     
Sbjct: 419 ERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGD-----DRRTELLVG 473

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
                +   + +IE+E I + ++N G+I+          +     +  +   + D +K  
Sbjct: 474 EV--LSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTL 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
           +   T D +L  +  GK Y      +        G  +  L+ ++ ++ I          
Sbjct: 532 VSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLGIDSSERIEAIISASGGP 591

Query: 610 -STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN- 667
                L   +  G       +        G   + +   +++  V++  G+ V ++G + 
Sbjct: 592 QEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELVNVIETHGEDVVIIGTHD 651

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
              + F    + +M R   GVR    +DG    V    I E    +      Y +     
Sbjct: 652 GYSVTFKEALVRDMGRTAAGVRGIRLRDGDYV-VGAAVITEDSEVLVITENGYGKRTKGS 710

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  RGG G        ++G    
Sbjct: 711 EYPIKGRGGKGIKTANITAKNGPLAG 736



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 500 CEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
            + S   +A +  +   +E       +  G ++     +        L A+  +E D L 
Sbjct: 575 IDSSERIEAIISASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDELV 634

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
             +  H  D +++ + DG + T     +   R  G     +  I L     +V A V   
Sbjct: 635 NVIETHGEDVVIIGTHDGYSVTFKEALV---RDMGRTAAGVRGIRLRDGDYVVGAAVITE 691

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGE 666
             ++LV++  G     + SE     R GK      +   +     L      + + V+ +
Sbjct: 692 DSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITD 751

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
              L+ F++  + +  R   GVRL   ++   + V+     E
Sbjct: 752 KGVLIRFNVATVSQTGRATLGVRLMKMENN--AKVVTMATVE 791


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/769 (33%), Positives = 420/769 (54%), Gaps = 42/769 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    + KK
Sbjct: 5   EQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF   +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+     A I+N +I IE+L+ +I  PDFPTGGI +   E + +++  GRG   +RA
Sbjct: 185 NLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGI-IYGYEGVRDAFMTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEEV  G  CI++TEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KSSVEEV-NGRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L  G  PQ++ L  I+  ++ HR EV+ R
Sbjct: 303 ILKKDSLPNVVLNTLFKHTALQSTFSVNNIALVKG-RPQMLNLKDIIYNFVEHRHEVVIR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I++I   +N ++ +  +V RF L+E QV AI
Sbjct: 362 RTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVERFQLSEIQVKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++ E D L+   E +  +L+S  ++   I  E+ E+KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRMEIIQTELLEIKEKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++        + MI  E + + IS+ G+I+              V   A 
Sbjct: 479 --DRRS---EINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKIQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+          IL  +  GK + +    +  G     G AIQ L++L+ +  
Sbjct: 534 TTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLMNLDPDDR 593

Query: 602 IVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I    + +        +   +L+V+ KG        +       G   + V   +++   
Sbjct: 594 INAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGINAISVRDGDELLSA 653

Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGL 709
           V   G++  ++G  + K L F    I  M RG  GV+  +   +   +  +IC K  +  
Sbjct: 654 VLTDGENQVMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDEVIGMICVKNPQEE 713

Query: 710 TWIDSAGRSYNRSENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  + + Y +              +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVA 762



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 79/220 (35%), Gaps = 19/220 (8%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
             L           ++++ +G ++              ++A+  ++GD L  A+     +
Sbjct: 601 ENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGINAISVRDGDELLSAVLTDGEN 660

Query: 562 RILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSS 619
           +++L    GKA           GRG      + +    ++ I    V +     +LVVS 
Sbjct: 661 QVMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDEVIGMICVKNPQEETVLVVSE 720

Query: 620 KGNAFIVEESEIIA------NTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRK 669
           KG        ++          R GK    + +S +    + +K     D + ++ ++  
Sbjct: 721 KGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVAMKTVHDEDDLMIIKKSGV 780

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +  S+  I  M R  +GVRL S K       +   I E 
Sbjct: 781 AIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKIINED 820


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/857 (31%), Positives = 409/857 (47%), Gaps = 118/857 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M 
Sbjct: 4   KDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  +L 
Sbjct: 303 DESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALE-GGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P         
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+ EVK  F+       RRT   E    +     + 
Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVP 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------CEGLTWIDSAG---------- 716
            +     R   GVR  +   G    VI   I         E  T++  +G          
Sbjct: 714 DVRVFSGRTSMGVRGIALSSG--DTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEE 771

Query: 717 ----------------------------------------RSYNRSENDLLGWLGKRGGV 736
                                                     Y +  +        RGG 
Sbjct: 772 NEPVETPEAEAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGK 831

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+GK ++S
Sbjct: 832 GIVAMSVNSRNGKLVAS 848



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK  + +S      K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +N +L+   ++ I    R                VI F   +    +  
Sbjct: 862 DNGQLIRCPVEGIRVAGRST------------QGVIVFNTADDEKVVSV 898



 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 910


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 519 PITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P   + +  G ++        +  S  L AL   EGD L  A        I+L S  GK 
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKV 743

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE  
Sbjct: 744 TRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFP 802

Query: 633 ANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
              R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV
Sbjct: 803 EYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGV 862

Query: 688 RLQSYKDG 695
            L      
Sbjct: 863 TLIKLASD 870


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 441/753 (58%), Gaps = 29/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++     E     +SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDQQNYSE----TISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  
Sbjct: 57  LRNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 116

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ + A L+L+ + +  VD+   ++    EP V P++ P++L NGT+GIA
Sbjct: 117 SFAAMRYTESRLHKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 176

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + LID P+ S+  L+ ++ GPDFPTG  ++  +E I + Y 
Sbjct: 177 VGMATDIPPHNLKELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYE 236

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+R+++  E        IV+TE+P+QV  S+++E+IA+ + AK++P++ D+RDE
Sbjct: 237 GGRGTLRLRSKYIQEGTD-----IVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDE 291

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E    +N+N++ +   PQV PL+ IL 
Sbjct: 292 SDHENPTRLVIEPRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILS 351

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  +++RF 
Sbjct: 352 EWLEFRTETVRRRLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKPKEELMARFG 411

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E D L  E+++++ +L S  +    I  EI   
Sbjct: 412 LSDVQAEAILEIKLRQLAKLEEIKIRGEQDELSKERDQLEKILGSKARMRTLIKKEILAD 471

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R T         A  +  ++  E +TVV+S RGWIRS K H ++   
Sbjct: 472 AETY------GDDRRTLLVSRAEASAFSETEILPSEAVTVVLSERGWIRSGKGHELEPEG 525

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GDS   A    +    +LL + G++Y+L    L S RG GE I   ++      +
Sbjct: 526 LNYKSGDSFAFAARGKSNQATVLLDSTGRSYSLQTHTLPSARGQGEPITTRLNPPPGAAM 585

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +   + L+ S  G  FI + S++++  + GK  L +    ++     V   + D
Sbjct: 586 KGLLLGNPDDQYLLTSDAGYGFIGKLSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTD 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
           ++A +    +LL+F +  +PE+++GKG ++ +        ++  +   +     + L  +
Sbjct: 646 YLAAISNEGRLLVFPVRDLPELAKGKGNKIINIPSSRAAAREELMVGAVVLGADDTL-LV 704

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +  R      +DL  +LG+RG  G+ +P+GF 
Sbjct: 705 YAGKRKLKLRGSDLEHYLGERGRRGNKLPRGFQ 737


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 411/756 (54%), Gaps = 32/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   L++ ++ YA+S I +RA+PD+RDG KPV RRI+    + G+  G    KSA
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVGEV+GK HPHGD ++YD+L RLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR+
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + +   +L  +D++ VDFR  Y+    EP V PS  PNLL NG SGIAVGMATS+P HN+
Sbjct: 124 SPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +A+IDNP I++E+++ Y+ GPDFPTGG +  SR+ I E+Y  GRG  +VRA+ 
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKL--SRKGIQEAYATGRGSLKVRAKV 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE G+    +VVTEIPYQV K+ LI +IA L+ AK+I  +  +RDES      +    
Sbjct: 242 RIEEKGQ-RPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R   P +++  ++  + ++T F +N+  +  G  P+V+PL  +++ +L HR+EV+ RRS
Sbjct: 301 KRGASPQVVLNQLYKHTALQTSFTVNLLAIVNGE-PKVLPLLSLMRHYLDHRKEVVRRRS 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  +L+GLLIA  +IDE+IA+IR      + +  ++ RF L+E Q  AIL+
Sbjct: 360 LFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMERFGLSEIQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  ++  E   L+ E  ++ ++L    + W ++  ++  VKE +  +    
Sbjct: 420 MRLQRLVALEREKLLEEYRELMEEIARLKAILEEEGRLWAEVKKDLLRVKEKYGDA---- 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHF 545
            RRT   E      +   + +IE EP+ + ++ +G+++ L   S                
Sbjct: 476 -RRTVITEFED---SFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAGKT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           KE D       A   + +LL +  G+ Y L    L     +  G  ++ L+ L   +++ 
Sbjct: 532 KEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKTLLPLAEEEEVA 591

Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
                   D    L+  + +G        E       G   +++   +++  V      D
Sbjct: 592 ALLSVRGLDGEGYLVFATERGLVKRTALREYQNLGAAGLIAIRLLEGDRLIGVALSDPED 651

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD--GGISDVICFKICEGLTWIDSAG 716
              +  E  + + F+++++    R  +GV    +K     +  ++  K  E +  +  + 
Sbjct: 652 EAILATEEGQAIRFALEEVRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVDLLAVST 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           R Y +        L  RGG+G +  K   + G+  +
Sbjct: 712 RGYGKRTPLAEYPLQGRGGMGVITYKVSTKVGRLAA 747



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 14/203 (6%)

Query: 518 EPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E   V  + RG ++           +  L A+   EGD L     +   D  +L + +G+
Sbjct: 602 EGYLVFATERGLVKRTALREYQNLGAAGLIAIRLLEGDRLIGVALSDPEDEAILATEEGQ 661

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEES 629
           A       + +     + +  +        +V+           LL VS++G       +
Sbjct: 662 AIRFALEEVRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVDLLAVSTRGYGKRTPLA 721

Query: 630 EIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
           E     R G   +         ++  ++KV G + + V+ +    +   +  I + SR  
Sbjct: 722 EYPLQGRGGMGVITYKVSTKVGRLAALLKVRGTEDLLVLSKKGLAIRTPVADIRQYSRDT 781

Query: 685 KGVRLQSYKDGGISDVICFKICE 707
            GV++ +  +     V  F + E
Sbjct: 782 AGVKVMNLPEDD-EVVSAFAVEE 803



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 133/418 (31%), Gaps = 48/418 (11%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR--SLDPDLLME 327
           ++EI  Q      ++++  L   K +    ++ +E A  ++ +L  + R  +     L+ 
Sbjct: 409 LSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIAR-LKAILEEEGRLWAEVKKDLLR 467

Query: 328 SIFML--------SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                        ++ E  F    +++    +   +   G LK     R  +   R+  R
Sbjct: 468 VKEKYGDARRTVITEFEDSFNPE-DLIEDEPMVITLTAQGFLK-----RLPLESYRAQGR 521

Query: 380 MQA---IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
                   +  E  + + +      E + +  N  +   + V        Q   +    L
Sbjct: 522 GGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKTL 581

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L + EE      +  L  E       L    ++       +RE + +       G   
Sbjct: 582 LPLAEEEEVAALLSVRGLDGE-----GYLVFATERGLVKRTALREYQNL----GAAGLIA 632

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE- 547
               E  R     +  A+ + E   ++ +  G         +R+    S  ++ + FK+ 
Sbjct: 633 IRLLEGDR----LIGVALSDPEDEAILATEEGQAIRFALEEVRATGRDSQGVTGIRFKKP 688

Query: 548 GDSLKIALHAH---TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           GD +   +        D +L +ST G     P          G  +           +  
Sbjct: 689 GDRVVSLVTVKPGEMVD-LLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVSTKVGRLAA 747

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDH 660
                 T  LLV+S KG A     ++I   +R   G   + +  ++++     V  + 
Sbjct: 748 LLKVRGTEDLLVLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEEQ 805


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/823 (31%), Positives = 407/823 (49%), Gaps = 87/823 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++   +  + +V  V++   +   YL YA+S I  RA+PD+RDG KPVHRRI+ AM E G
Sbjct: 1   MTAIPSPSQFDVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD 
Sbjct: 61  YDYNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDK 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM + A  +++ +D+D VDF   Y++   EP+V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTEARMARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A+IDNP+I+ E+++E + GPDFPTGG I+  R  I  +   
Sbjct: 181 GMATNIPPHNLGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTIL-GRSGIRAAQLT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EEV +    I+VTE+PYQV K+R+IE+IAEL+  K+I  + D+RDES
Sbjct: 240 GRGSVVMRGRCHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R    D+++  ++  + ++T F +N   L+ G  PQ+M L  I+  +L
Sbjct: 300 DRDGVRVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALN-GGRPQMMTLREIIAAFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------ 413
             R EV+ RR+ F +     R  +L GL IA  NID++I +IR    P            
Sbjct: 359 RFREEVITRRTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKW 418

Query: 414 ----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                           + ++   +SL+E Q  AIL+LRL  L  LE  +I  EL  +  +
Sbjct: 419 PALDVEPLIRLIDEPGRGIVDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQ 478

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            ++   +L+S  +    +  E+ +++  F+        R T  E S  +     + +I +
Sbjct: 479 IKEFLEILSSRPKLLEVMRNELIDMRNQFATP------RRTTIEDSEFEADI--EDLIAR 530

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++N G+I+          K      S +  K+ D L       T   +L  S+ 
Sbjct: 531 EDMVVTVTNTGYIKRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSST 590

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKG 621
           G AY L    L  G     G+A+  ++ L   + I T               +   +SKG
Sbjct: 591 GIAYKLKVYRLPLGTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKG 650

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
           +      S+ +     GK  +K++  E++  V   +  D + +     K + F +  +  
Sbjct: 651 DVRRNLLSDFVDIRANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRV 710

Query: 681 -MSR-GKGVRLQSYKDGGISDVICFKI----------------------------CEGLT 710
              R   GVR     D     VI   +                                 
Sbjct: 711 FKGRDSTGVRGIRLDDA--DQVISMSVLRHVEFDMETRDAYLRNDLTGPEAERMSESEQM 768

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +      Y +  +     +  RGG G        ++G  ++S
Sbjct: 769 ILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKNGPVVAS 811



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 54/283 (19%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGW 529
           IA +++  +         G+       +   +  +    M E E           +++G 
Sbjct: 592 IAYKLKVYRLPLGTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGD 651

Query: 530 IR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +R       +   +    A+   +G+ L        +D ILL +  GKA     G++   
Sbjct: 652 VRRNLLSDFVDIRANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVF 711

Query: 584 RGHGEAIQLLIDLNHNQDIVTA---------------------------FVYDSTCKLLV 616
           +G        I L+    +++                             + +S   +L 
Sbjct: 712 KGRDSTGVRGIRLDDADQVISMSVLRHVEFDMETRDAYLRNDLTGPEAERMSESEQMILT 771

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
           V+  G        E     R G+    +   EK   VV        D + +V +   L+ 
Sbjct: 772 VTENGYGKRTSAYEYRITGRGGQGIANIDLTEKNGPVVASFPVGHDDEIMLVSDGGTLIR 831

Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             +D I    R                VI  +  E    + +A
Sbjct: 832 MPVDDIRIAGR------------KTQGVIVLRTAENERVVSTA 862


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/772 (32%), Positives = 400/772 (51%), Gaps = 32/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I  +       V+   L   +   +L Y++S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSDKEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G+       KSAR VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+
Sbjct: 61  MYDSGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+ + A  +L  + ++ VD+   Y+E   EP V P++FPNLL NG+
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP+++ E+L+E + GPDFPTGG+ +  RE I+
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGV-IRGREGII 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +++ + ++E   G   I++TEIPYQV +S L++KI EL+  K++P + +
Sbjct: 240 SAYETGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISN 299

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +    ++    ++  P +++  +F  + ++  + + M  L  G VP+ + L  
Sbjct: 300 VHDGADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDG-VPRTLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
           IL  ++ H+ +V+ RR+ F ++  + R  I++GLLIA  +IDE+IAIIR     K     
Sbjct: 359 ILHYYILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDK 418

Query: 419 --SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              RF L+E Q  AIL ++LR L  LE  +++ EL  L  +      +L         I 
Sbjct: 419 LSERFGLSEAQCTAILQMQLRRLTGLEREKLQEELAELKEKIAYYKRILADEHLMRQVIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----- 531
            E++E+K  F+       RRT         K    + +I  E + V ++N G+I+     
Sbjct: 479 EELQEIKGRFNTP-----RRTRIA---GPAKDIDVEDLIADEEMVVTMTNAGYIKRLPVT 530

Query: 532 ---SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                K     +  ++ KE D ++    A T + +L  S+ GK Y      +        
Sbjct: 531 TYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRHAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G A+  L+ L+  + IV A     +     L+  + +G       S      + G   + 
Sbjct: 591 GTAVVNLLKLDKGESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAIN 650

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V +V  G+ VA+V    K + +   ++  M R   GVR  +  DG    V+
Sbjct: 651 LREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAMGRDTMGVRGMTVPDGV--HVL 708

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +I   G        R Y +        L  RGG G        + G+  +
Sbjct: 709 GLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTAKKGQLAA 760



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 22/243 (9%)

Query: 483 KEIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           K++F         R T        +   +  A +      ++   +  +  G ++     
Sbjct: 577 KKVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMS 636

Query: 537 SVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
             D +      A++ +EGD L         +++ ++S+ GKA +     +   R  G   
Sbjct: 637 LYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEV---RAMGRDT 693

Query: 591 QLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKV 644
             +  + +     ++   +     ++ V++ +G        E   + R G+      +  
Sbjct: 694 MGVRGMTVPDGVHVLGLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTA 753

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              +   + V  + D + ++ E   ++  S+  I ++ R   GV++ +         +  
Sbjct: 754 KKGQLAAMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDRVSAVAI 813

Query: 704 KIC 706
              
Sbjct: 814 APD 816


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/792 (30%), Positives = 409/792 (51%), Gaps = 52/792 (6%)

Query: 1   MGVDNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  +    +    EE     ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR
Sbjct: 1   MADETTPTAEGSAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+   D AAA RYTE ++  +A  +L+ +DE+ VDF+D Y+  + EP V P++FPNLL
Sbjct: 121 NFGSPGNDPAAAMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGII 232
            NG++GIAVGMAT+IP HN++E+   A   +++PE S E+    L+E I GPDFPTG ++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALV 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+  
Sbjct: 241 V-GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKD 298

Query: 293 KRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            +I  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G V
Sbjct: 299 GKIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-V 357

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+ + +D  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +
Sbjct: 358 PRTLSIDAFIRHWVQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSN 417

Query: 412 K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                +  ++    + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S 
Sbjct: 418 TVEIAREGLMGLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASP 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           ++Q + ++ E+  + E +        RR+        D     + +I +E I V I++ G
Sbjct: 478 EKQRSIVSEELAAIVEKYGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTITHGG 529

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +++          K     +     K+ D +     + T   +L  +  G+ Y   A  L
Sbjct: 530 YVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYEL 589

Query: 581 L--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANT 635
                   G+ +  L+    ++ I        Y++   L++ +  G        +  +  
Sbjct: 590 PDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYEAAPYLILATKGGLVKKTALKDYDSPR 649

Query: 636 RKGKTFLKVSS---------EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR 683
             G   + +            +++     V+  D + ++ +  + + F+     +  M R
Sbjct: 650 SGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGR 709

Query: 684 GK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              GV+  S+++G   +++   +    T++  +    Y +        +  RGG+G    
Sbjct: 710 ATSGVKGMSFREG--DELLSMSVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAA 767

Query: 742 KGFPRSGKFLSS 753
           K     G  + +
Sbjct: 768 KIVEDRGSLVGA 779



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 74/249 (29%), Gaps = 31/249 (12%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  ++ +  G ++      
Sbjct: 585 KAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYEAAPYLILATKGGLVKKTALKD 644

Query: 538 VD------LSALHFKEG---------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            D      + A++ +E          D L  A      D +LL+S   ++    A +  +
Sbjct: 645 YDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISKKAQSIRFTATD-EA 703

Query: 583 GRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-- 638
            R  G A   +  +      ++++  V      +   +  G A      E     R G  
Sbjct: 704 LRPMGRATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 763

Query: 639 -KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            K    V     +   + V   D +  +     ++   + ++ E  R   GV+L +   G
Sbjct: 764 IKAAKIVEDRGSLVGALVVDESDEILAITLGGGVIRTRVSEVRETGRDTMGVQLINL--G 821

Query: 696 GISDVICFK 704
               V+   
Sbjct: 822 KRDAVVGIA 830



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 704 LRPMGRATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 763

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V D + ++L ++  G       SE+    R   G   + +   
Sbjct: 764 IKAAKIVEDRGSLVGALVVDESDEILAITLGGGVIRTRVSEVRETGRDTMGVQLINLGKR 823

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 824 DAVVGIAR 831


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/777 (30%), Positives = 400/777 (51%), Gaps = 39/777 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D      T+  + ++ V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++++
Sbjct: 4   MGDDIFD--QTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYS 61

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+        +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  R  L+ G GNFG+
Sbjct: 62  MIELNNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGS 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR+++++  ++  +++D VDF   ++E + EPVV P++ PNLL NGT
Sbjct: 122 IDGDGAAAMRYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGT 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVES 235
           +GIAVGMAT+IP HN++E+  A + +IDN         I ++L  + GPDFPTGGII+  
Sbjct: 182 TGIAVGMATNIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIIL-G 240

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I E+YR GRG  +VRA   +E +  G   I+V+EIPY V K+R+IEKIA+++  KR+
Sbjct: 241 RAGIEEAYRTGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRL 300

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             +  +RDE++ +   V+    + ++P++++  ++  + ++  + + M  L  G  P++M
Sbjct: 301 DGITALRDETSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALV-GNQPRIM 359

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L  +L  ++ H+ +V+ RR+ F +     R  IL+GLL A  NIDE+I IIR+      
Sbjct: 360 SLKEVLDHYILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAI 419

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  ++ RF+L+E Q  AI+++RLR+L  LE  ++++E   L+ +      +L   K+  
Sbjct: 420 AKEQLMGRFALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGILADHKKLL 479

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  E++E+ + +        RRT   ++   D     + +I      +  +  G+I+ 
Sbjct: 480 TVVKEEMQEIADKYGD-----DRRT---QIGFDDDDISAEDLIPVTHPIITFTKFGYIKR 531

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                          +  +   + D +   +   + + +   +  G+ Y L A  +   S
Sbjct: 532 MSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNKGRVYRLKAYEIPEAS 591

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
               G AI  L+ L  ++ I +        D    L + + +G        E     + G
Sbjct: 592 RTARGTAIVNLLQLMPDETITSMIPVVPGEDEDKYLFMATQRGIVKKTRLREYENIRKSG 651

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              + +  E+++  V      D V +     + + F    +    R   GV   +  D  
Sbjct: 652 LAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVRGTGRSTMGVIGINLSD-- 709

Query: 697 ISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              VI  ++  +G + +  + R   +           RGG G    K   ++G  + 
Sbjct: 710 QDCVIAMQLASQGESLVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITEKTGDLVG 766



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 85/252 (33%), Gaps = 25/252 (9%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSH 536
           + +         R T               + +     E E   + + + RG ++  +  
Sbjct: 583 KAYEIPEASRTARGTAIVNLLQLMPDETITSMIPVVPGEDEDKYLFMATQRGIVKKTRLR 642

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    L+A++ ++ D L        TD ++L +  G+       ++   RG G + 
Sbjct: 643 EYENIRKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDV---RGTGRST 699

Query: 591 QLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKV 644
             +I  +L+    ++   +      L++VS +G        E  ++ R GK      +  
Sbjct: 700 MGVIGINLSDQDCVIAMQLASQGESLVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE 759

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + + +  V  V  D  + ++     ++  +I     + R   GV+L   K       I 
Sbjct: 760 KTGD-LVGVKSVDKDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASIS 818

Query: 703 FKICEGLTWIDS 714
               E L   D 
Sbjct: 819 VVQREDLPLEDE 830


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/857 (31%), Positives = 409/857 (47%), Gaps = 118/857 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M 
Sbjct: 4   KDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  +L 
Sbjct: 303 DESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALE-GGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P         
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+ EVK  F+       RRT   E    +     + 
Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVP 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------CEGLTWIDSAG---------- 716
            +     R   GVR  +   G    VI   I         E  T++  +G          
Sbjct: 714 DVRVFSGRTSMGVRGIALSSG--DTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEE 771

Query: 717 ----------------------------------------RSYNRSENDLLGWLGKRGGV 736
                                                     Y +  +        RGG 
Sbjct: 772 NEPVETPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGK 831

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+GK ++S
Sbjct: 832 GIVAMSVNSRNGKLVAS 848



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK  + +S      K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +N +L+   ++ I    R                VI F   +    +  
Sbjct: 862 DNGQLIRCPVEGIRVAGRST------------QGVIVFNTADDEKVVSV 898



 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 910


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 412/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI+H M+EMGL     ++
Sbjct: 4   DERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD+AAA RYTE
Sbjct: 64  KSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T++AE +L  ++++ VDF   Y+E   EP+V PS+ PNLL NG  GIAVG AT+IP+
Sbjct: 124 ARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ E  L L++NPE++I +L++ I GPDFPT G  +     I ++Y  GRG   VR
Sbjct: 184 HNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAG-FIYGTSGIKDAYETGRGLLTVR 242

Query: 254 ARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           A+  +E   R     +++TEIPYQV KS+LIEKIA+L    R+  + DIRDES  +   V
Sbjct: 243 AKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+  P +++ +++  S ++T F +NM  L     P+V+ L  IL+ ++ HRREV+
Sbjct: 303 VIELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNN-RPEVLNLKRILEAFVEHRREVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+++ ++  + R  IL+GL IA  N+D +IA+IR     D  +  ++ +F L+E Q +
Sbjct: 362 VRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQFRLSEIQAN 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L +LE  ++  E   +L   E + S+L S       I  E+ E+KE +   
Sbjct: 422 AILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSEALVRKIIRDELTEIKEKYQDE 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT      + +     + +I +E + V IS+ G+I+          +       
Sbjct: 482 -----RRTKIV---KEEAELTLEDLIAEEEVVVTISHAGYIKRNAVTLYRAQRRGGKGKI 533

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A+  KE D ++    A T D +L  +  GK Y L    +   S    G+A+  L+ L+ +
Sbjct: 534 AMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAKGKALVNLLALSKD 593

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +        Y +   +++ + +G     E S      + G   L + + +K+  V   
Sbjct: 594 EKVTATLPVKEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIGVDLT 653

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            G   + +  +    + F  + +  M R   GVR  + + G  +  +           + 
Sbjct: 654 DGQREILLGTKQGITIRFKEEDVRAMGRTAHGVRGITLEPGDEVIGMETITPDSTTAILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                Y +        +  RGG G +  K   R+G  + 
Sbjct: 714 VTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERNGPAVG 752



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                ATL       +   ++ + +G I+  +  +        + AL    GD L     
Sbjct: 593 DEKVTATLPVKEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIGVDL 652

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKL 614
                 ILL +  G        ++ +       ++  I L    +++       DST  +
Sbjct: 653 TDGQREILLGTKQGITIRFKEEDVRAMGRTAHGVRG-ITLEPGDEVIGMETITPDSTTAI 711

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E     R GK  + V     +   +  +     D + ++    K+
Sbjct: 712 LTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERNGPAVGFLQVRDEDEIMLMAAQGKV 771

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           L   +D I E+ R  +GVRL          V   ++ E    +   G
Sbjct: 772 LRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEG 818


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/752 (37%), Positives = 449/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDMTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P+ S+E LL Y+ GPDFPT   I+  R+ I + Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYESGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSVVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ 
Sbjct: 357 FRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E  + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  +   EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLHERGE-AKAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    
Sbjct: 531 AGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     +LL+ S  G  FI   ++++A  R GK  L +    ++   +++  D   +  +
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDHARVLPPLELQRDDELLLTI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDVICFKIC-EGLTWIDSAGRS 718
               +LL+F +  +P +S+GKG ++ S        G    +    I  +    + +  R 
Sbjct: 651 TAAGRLLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMTIAPQSSVTLYAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 711 YSLRPEELQKYQASRGCKGTALPRGLQRVDRI 742


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 406/764 (53%), Gaps = 32/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G    
Sbjct: 2   SELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG 
Sbjct: 182 NIPTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  + 
Sbjct: 241 VTVRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R     +++ +++  + ++T F  NM  +     P+ M L  IL  +LAH+R
Sbjct: 301 LRISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAI-DHGAPKTMSLKEILVAYLAHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           EV+ RR+ F +Q    R  IL+GL IA  +IDEII IIR+    ++ K  +++ ++L++ 
Sbjct: 360 EVIRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E++  F
Sbjct: 420 QAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEIIYNELLEIQTKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G +R T  +V     +   + +IE+E + V ++N G+I+               
Sbjct: 480 ------GDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  GK Y +    +     +  G  +  L++ 
Sbjct: 533 GVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLNF 592

Query: 597 NHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             N+ I T         +S   L  V+  G        E       G   L +  ++++ 
Sbjct: 593 EGNEKIQTVINVRGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVL 652

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V    G  ++ +   N   + F+ + +  M R   GVR    ++G +  V+   + E  
Sbjct: 653 SVQITDGTQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDL--VVGSDVLEKD 710

Query: 710 -TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +        +  RGG G        ++G    
Sbjct: 711 HNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAG 754



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
              E       ++  G ++           +  L AL   + D +        T  I++ 
Sbjct: 607 EAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVLSVQITDGTQNIIIA 666

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G + +    ++         ++  I L     +V + V +    +L+++ KG     
Sbjct: 667 THNGYSVSFAENDVRVMGRSAAGVRG-IRLREGDLVVGSDVLEKDHNVLIITEKGYGKQT 725

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             SE     R GK     +  EK   +  +  V+G + + V      ++ F++D + +  
Sbjct: 726 PVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIMVTTTQGVMIRFNVDSVSQTG 785

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R   GVRL    +G        K+       D +  + +++  D  
Sbjct: 786 RATLGVRLIRL-EGNAKVATLAKVEHEEVLEDVSRETSDKAPLDEQ 830



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D   L   + +     ++ ++ G+        +R +   +  +  +  +EGD +  + 
Sbjct: 646 HDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDLVVGSD 705

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +L+++  G     P          G+ I+       N  +    +      ++
Sbjct: 706 VLEKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIM 765

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           V +++G         +    R   G   +++    K+  + KV  + V 
Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVL 814


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 417/833 (50%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG+G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGA 826



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 88/246 (35%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G   + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGLGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/753 (37%), Positives = 445/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   SEMTHDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L+ + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+  AA+AL++ P  S+E LLE++ GPDFPT   I+  R  I + Y  G+G
Sbjct: 182 TDIPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWHKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   PQV  L  IL EWLA
Sbjct: 297 NPTRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGLLEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +FR+  + +R+ IL+GLL A+LNIDE+I IIR ED+PKPV++ RF L++ 
Sbjct: 357 YRRDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPVLMQRFELSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+   E F
Sbjct: 417 QAEAILELKLRHLAKLEETKIRGEQDELAKERDQLQALLASERKLSTLIRKEIQADAEAF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     +A  +   I  EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GDE-----RRSPITEREE-ARAMSEHDFIPSEPVTIVLSESGWVRSAKGHDIDASGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFMDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G    +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++       +T +    R
Sbjct: 651 TAAGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLAWLLVLPPQTSIT-LHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLVLRPEDLQKFRAERGRKGTLLPRGLQRIDRV 742


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/760 (31%), Positives = 394/760 (51%), Gaps = 33/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKS
Sbjct: 8   RITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ ++++ VDF++ Y+  + EP + P++FPNLL NG +GIAVGM T+IP HN
Sbjct: 128 MSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++N + +   L+E + GPDFPTGGI++  +  I ++Y  G G   +RA+
Sbjct: 188 LSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVM-GKSGIRKAYETGHGTIILRAK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E    G   IV TE+PY V K++LIE+IAEL   KRI  + D+ DES  D   V+  
Sbjct: 247 VDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVID 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +   +++ +++ ++ M+T F  NM  +  G  P+V+ L  IL+ +L H+ EV+ RR
Sbjct: 307 VRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGA-PKVLGLKEILQHYLVHQEEVIRRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++  + R  IL+GL IA  +IDEIIAIIRN       K  +++ +SL+  Q  AIL
Sbjct: 366 TEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLMNNYSLSSKQAQAIL 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  LE  +++ E + ++A       +L   ++    I  E+ E++E F      
Sbjct: 426 DMRLVRLTGLEREKVEDEYNKVMAAITDYRDILAHRERINEIIYKELLEIQERFGDE--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT          +   + +IE+E + V +++ G+I+                +  + 
Sbjct: 483 --RRTELMVGEV--LSLEDEDLIEEEDVMVTLTHNGYIKRMATSEFKTQNRGGRGIQGMG 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D ++  +   T D +L  +  GK Y +    +   S    G  +  L+ ++  ++I
Sbjct: 539 VHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLLGISSGENI 598

Query: 603 VTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                         +    L   +  G       +E +     G   + +   +++  VV
Sbjct: 599 QAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFLNIRSNGLKAISLKENDEVINVV 658

Query: 655 KVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+   ++G  N   + F    +  M R   GVR    +D     V    +      +
Sbjct: 659 ITDGEQNIIIGTHNGYAVSFKEADVRSMGRSATGVRGIRLRDEDYV-VGSAILKPESKVL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +        +  RGG G        ++G    
Sbjct: 718 VITEKGYGKQTPASEYPIKGRGGKGIKTANITEKNGPLAG 757



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 8/188 (4%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            L   S  L A+  KE D +   +       I++ + +G A +    ++ S       ++
Sbjct: 635 FLNIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSMGRSATGVR 694

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSE 647
             I L     +V + +     K+LV++ KG       SE     R GK      +   + 
Sbjct: 695 G-IRLRDEDYVVGSAILKPESKVLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKNG 753

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               LV     + V ++ +   ++ F ++ +    R   GV +   K    S V    I 
Sbjct: 754 PLAGLVTVEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVI--KTDENSKVATMAIV 811

Query: 707 EGLTWIDS 714
           +     D 
Sbjct: 812 DEAPVDDE 819



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 69/204 (33%), Gaps = 22/204 (10%)

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------ 524
            E  E + +F  + +   +RT   E        L+   +++    + +            
Sbjct: 610 DEDNENRYLFFTTLNGVTKRTPVAEFLNIRSNGLKAISLKENDEVINVVITDGEQNIIIG 669

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+        +RS+   +  +  +  ++ D +  +       ++L+++  G     P
Sbjct: 670 THNGYAVSFKEADVRSMGRSATGVRGIRLRDEDYVVGSAILKPESKVLVITEKGYGKQTP 729

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A         G+ I+       N  +      + T  +++++ +G     + + +    R
Sbjct: 730 ASEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGTEDVMLITDRGVMIRFDVNNVSTTGR 789

Query: 637 K--GKTFLKVSSEEKMKLVVKVTG 658
              G   +K     K+  +  V  
Sbjct: 790 ATLGVHVIKTDENSKVATMAIVDE 813


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 393/767 (51%), Gaps = 39/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K
Sbjct: 7   DKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E ++E++LE I GPDFPTG  I+  +  I E+YR GRG 
Sbjct: 187 NLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATIL-GKRGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   I+VTE+PY V K+RLIEKIAEL+  K++  + D+RDES    
Sbjct: 246 IRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGILKEWL 365
             +     R  + ++++  +   + ++  F + M  L         P+V+ +  +L  +L
Sbjct: 306 MRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYL 365

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H++EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR  +     K  ++SRF 
Sbjct: 366 DHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSRFG 425

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AI+++RLR+L  LE  ++++E   L A   ++ S+L   K+    I  EI  +
Sbjct: 426 LSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIAELKSILADEKKLLGVIKEEISII 485

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
              +        RRT+       +     + +I  E   V ++  G+I        ++  
Sbjct: 486 SAKYGD-----DRRTSIG---FDEFDMSMEDLIPDESTIVAMTKLGYIKRMSVDNFKNQN 537

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D ++  +   T   ++  +  G+ Y L    +   S    G AI  
Sbjct: 538 RGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTSRGTAIVN 597

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I        YD    L + +  G        E     + G   + +   ++
Sbjct: 598 LLQMLPGESITAIIPMKEYDDDKFLFMATRNGMVKKTPMMEYANVRKNGLQAIVLRENDE 657

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KIC 706
           +  V        + +V +  + + F    +    R   GV      +     V+   K  
Sbjct: 658 LIEVKATDDTKDIFLVTKKGQCIRFHEKDVRITGRVSMGVIGMKLNED--DQVVGMQKES 715

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G   +  +     +          +RGG G L  K   ++G  + +
Sbjct: 716 QGPKLLIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITEKTGDIVGA 762



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 12/212 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
            +  A +     + +    + +  G ++              L A+  +E D L      
Sbjct: 605 ESITAIIPMKEYDDDKFLFMATRNGMVKKTPMMEYANVRKNGLQAIVLRENDELIEVKAT 664

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
             T  I L++  G+       ++         +  +  LN +  +V         KLL+V
Sbjct: 665 DDTKDIFLVTKKGQCIRFHEKDVRITGRVSMGVIGM-KLNEDDQVVGMQKESQGPKLLIV 723

Query: 618 SSKGNAFIVEESEIIANTRKGKTFL--KVSSE-EKMKLVVKVTGDH-VAVVGENRKLLIF 673
           S+ G        E     R GK  L  K++ +   +     V  DH + ++     ++  
Sbjct: 724 SANGMGKRTPIEEFTPQRRGGKGVLCYKITEKTGDIVGAKLVEDDHDLLLITTEGIVIRI 783

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           S++ I  + R   GV+L +        V    
Sbjct: 784 SVNDISVIGRNTSGVKLMNIDQDSDITVASIA 815



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R     S+ +  +   E D +          ++L++S +G     P       R  G+ 
Sbjct: 687 VRITGRVSMGVIGMKLNEDDQVVGMQKESQGPKLLIVSANGMGKRTPIEEFTPQRRGGKG 746

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +          DIV A + +    LL+++++G    +  ++I    R   G   + +  +
Sbjct: 747 VLCYKITEKTGDIVGAKLVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQD 806

Query: 648 EK--MKLVVKVTGD 659
               +  + KV  D
Sbjct: 807 SDITVASIAKVRDD 820


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/759 (33%), Positives = 404/759 (53%), Gaps = 33/759 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G   KK
Sbjct: 4   ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVRL Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D+  VDF   +++   EP V PS  PNLLANG+SGIAVGMAT+IP  
Sbjct: 124 RMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +  +ALI NPE+ +  L++Y+I PDFPTGGI +   E +  +Y  GRG   +RA
Sbjct: 184 NLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGI-IYGYEGVRSAYMTGRGKVVIRA 242

Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   +     IVVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D   ++
Sbjct: 243 RAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++ +++  + M+  F + M  L  G VP+++ L  ++  ++ HR E++ 
Sbjct: 303 IELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMVYYIKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F +   ++R  IL+GL I   N+DE+I+ IR        +  ++ RF L+E Q  A
Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIERFGLSELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I  E   +LA  E++  +L S ++Q   I  E+ +V+E++    
Sbjct: 422 ILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSPEKQMQIIREELLKVREVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  +  G+ + L    +        G A+  +++L   +
Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAARGRALANIMELQQGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++ G        +     + G   + +   +++       
Sbjct: 594 KIRAYINIRNFDEPGFIVMATTNGIVKKTPLEDFSHPRKNGIAAITIDEHDELLDARLTD 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFKICEGLTWID 713
           GDH  ++ +N   ++ F   +I  M R   GV+  +  +G   IS V   +    L  + 
Sbjct: 654 GDHQIILAKNSGFVVRFPEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRFDTALLAVT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G  + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNG--FGKRSRVEDYRLTRRGARGVITLKAHEKVGALIG 750



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     +A +     ++    V+ +  G ++              ++A+   E D L 
Sbjct: 588 ELQQGEKIRAYINIRNFDEPGFIVMATTNGIVKKTPLEDFSHPRKNGIAAITIDEHDELL 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-T 611
            A       +I+L    G     P   + S       ++  I L+  +  ++        
Sbjct: 648 DARLTDGDHQIILAKNSGFVVRFPEAEIRSMGRTAMGVKG-ITLDEGEKCISMVTTKRFD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGEN 667
             LL V+  G        +     R  +  + + + EK+  ++        D + ++   
Sbjct: 707 TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHEKVGALIGLLDVNDDDDLIIITAQ 766

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +    +  I    R   GVRL     G I   + 
Sbjct: 767 GIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALA 802


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/759 (35%), Positives = 421/759 (55%), Gaps = 30/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  V  +S+   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M+EMGL    AF
Sbjct: 4   IKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDRAF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK  RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++  QGNFG++DGD  AA RYT
Sbjct: 64  KKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M +VAE +L+ + ++ VD+   Y++   EP+V P  FP LL NG SGIAVGMAT++ 
Sbjct: 124 EAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+C A +A I++  ISI+ L++YI GPDFPTGGII   R  I +++R G+G   V
Sbjct: 184 PHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIF-GRRGIKQAFRTGKGKITV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+++ +E    G   I+VTEIPY V K+ LI KIA+L+  KRI  + D+RDES  D   +
Sbjct: 243 RSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMRI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P +++  +F  + ++  F +    L  G  P+ + L  ++  ++ HR EV+
Sbjct: 303 VIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGM-PKQLNLKELVHYFVRHRVEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ + ++  + R  IL+GL IA  NIDE++ II++ +     +  ++ RF L+E Q  
Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMERFKLSERQSQ 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I+ EL  +LA    +  LL+S ++    +  E  E+ + +   
Sbjct: 422 AILDMRLQKLTSLETKKIEEELREVLALIAYLKDLLSSEQKILGVVRDETEEIAQKY--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--- 546
              G  R T       +     + +I+KE + V++SN+G+I+ +   S        K   
Sbjct: 479 ---GDDRKTEIVADEVE-EINIEDLIQKEDMVVLVSNKGFIKRVPVSSYRNQGRGGKGSS 534

Query: 547 -----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
                  D +K    A T D IL ++ +GKAY +    +  G     G  I+ L++++ N
Sbjct: 535 SAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPEGSRASRGTHIKALLEISAN 594

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           +DI T      +     L + +++G    V+ S+      +G   +K+ + + +   V  
Sbjct: 595 EDITTIVSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTRGIIAIKLDNGDTLITAVLT 654

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWID 713
            GD  + +V  N   L F  DQ+  M R  +GV     + D  ++ ++  +  E +  + 
Sbjct: 655 RGDSEIVIVSRNGNALRFHEDQVRAMGRASRGVTGIRLQSDDELAGILRVEDNEKMLLL- 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +        L  RG  G +  K   RSG+ + 
Sbjct: 714 -SENGLGKRVEYDHFSLHGRGTRGQIAYKTSERSGEIVG 751



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 20/238 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSV------ 538
                 G       E+S  +  T   ++ E  +E    + + RG ++ +K+         
Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTR 635

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDL 596
            + A+    GD+L  A+       I+++S +G A       +   R  G A + +  I L
Sbjct: 636 GIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQV---RAMGRASRGVTGIRL 692

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
             + ++      +   K+L++S  G    VE      + R  +G+   K S    ++  V
Sbjct: 693 QSDDELAGILRVEDNEKMLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERSGEIVGV 752

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL--QSYKDGGISDVICFKICE 707
           + V   D +  +      +   +  +P   +  +GV +   +  D  +         +
Sbjct: 753 LSVLEEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARVMNDKD 810


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 410/756 (54%), Gaps = 29/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT    +     +   + +IE+  + + +SNRG+I+          K     +
Sbjct: 479 K-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                ++ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ 
Sbjct: 532 QGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++ I T    +        L   +           E     + G   L +  E+++  V+
Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHVLLKRTSVKEFANIRQNGLKALNLKDEDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +
Sbjct: 652 LAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               + Y +           RGG G    K   ++G
Sbjct: 711 IITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 746



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +    ++              L AL+ K+ D L 
Sbjct: 589 LDEDESIQTVINVESDRSDDAYLFFTTRHVLLKRTSVKEFANIRQNGLKALNLKDEDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +  +
Sbjct: 562 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHV 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 619 LLKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 679 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 739 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 798

Query: 651 K 651
            
Sbjct: 799 V 799


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/824 (31%), Positives = 406/824 (49%), Gaps = 95/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  +S+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M + G      + K
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I ++YR GRG   VRA
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGIEDAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  +  I D S +    ++ 
Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
               +   ++++ +++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ R
Sbjct: 305 EIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQIIEAFVMHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR----------- 420
           R+ F ++    R  IL+GL IA  NID +I +IRN    D+ +  ++ R           
Sbjct: 364 RTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPML 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLVE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +LNS ++    I  E+ ++K  F        RRT   E++ A      + +I +
Sbjct: 484 ISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSC 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVR 715

Query: 680 EMSR-GKGVRLQSY-------KDGGISD---------------------VICFKICEGL- 709
            M R   GVR            D    D                     V+   I     
Sbjct: 716 GMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSLVIPHTQG 775

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +        +  R   G +  K   R+GK +++
Sbjct: 776 EILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAA 819



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 81/242 (33%), Gaps = 43/242 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L      +    I+L S  G+
Sbjct: 646 DKFIFMATASGTVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGR 705

Query: 572 AYTLPAGNLLSGRGHGEAIQLL------IDLNHNQDI----------------------- 602
                   +         ++ +      I ++  +++                       
Sbjct: 706 VVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEVDIETVENEEAEEASSVNLTTDKV 765

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTG 658
           V+  +  +  ++L V+  G        E    +R  K  + +   E+    +  V     
Sbjct: 766 VSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEN 825

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDV--ICFKICEGLTWIDS 714
           D + ++ +   L+   ++++  + R  +GVR+    +D  +  +  IC    +G+  +  
Sbjct: 826 DQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSV 885

Query: 715 AG 716
             
Sbjct: 886 EE 887


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/857 (31%), Positives = 409/857 (47%), Gaps = 118/857 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+      L   +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M 
Sbjct: 4   KDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P ++I+ L + + GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIIL-GRSGIRSA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   P++++  ++  + ++T F  NM  L  G  PQ+M L  +L 
Sbjct: 303 DESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALE-GGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IRN   P         
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+  VK  F+       R+T   E    +     + 
Sbjct: 482 LAVEIADYLEILRSRARVQTIVKDELGAVKAEFATP-----RKTVIVE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVP 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------CEGLTWIDSAG---------- 716
            +     R   GVR  +   G    VI   I         E  T++  +G          
Sbjct: 714 DVRVFSGRTSMGVRGIALSSG--DKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEE 771

Query: 717 ----------------------------------------RSYNRSENDLLGWLGKRGGV 736
                                                     Y +  +        RGG 
Sbjct: 772 SEPIETPEVEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGK 831

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+GK ++S
Sbjct: 832 GIVAMSVNGRNGKLVAS 848



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK  + +S      K+     V   D + +V 
Sbjct: 802 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIMLVT 861

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +N +L+   ++ I    R                VI F   +    +  
Sbjct: 862 DNGQLIRCPVEGIRVAGRST------------QGVIVFNTADDEKVVSV 898



 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +     N  +V +F  + + ++++V+  
Sbjct: 804 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIMLVTDN 863

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV----TGDH 660
           G         I    R   G      + +EK+  V ++     GD+
Sbjct: 864 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDDGDN 909


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/757 (33%), Positives = 401/757 (52%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +R  +E+ +L Y++S I  RA+PD+RDG KPVHRRI++AM E  L    A++K
Sbjct: 6   QKLIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA  VG V+G+ HPHGD SVYD+LVR+AQ F  RYPL+ G GNFG+IDGD  AAYRYTEA
Sbjct: 66  SATTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +LQ ++++ VDF+  +++   EP+V PS+FPN+L NG+SGIAVGMAT+IP H
Sbjct: 126 RMSRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +    LIDNP+ ++E+L  +I GPDFPTGGII+  R  I E+Y  GR    +RA
Sbjct: 186 NLGEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIM-GRAGIREAYVKGRSRITLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+VTEIPY V K+R++E IAEL   KRI  + D+RDES  +   ++ 
Sbjct: 245 KATIEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P +++  ++  S ++   P+ M  L  G  P+V+PL  IL E++  + +V+ R
Sbjct: 305 ELKRDANPQVVLNRLYTYSQLQETVPVIMLALVNGH-PRVLPLRDILTEYIHFQEQVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL IA   IDE+I I+R      + K  ++ RF L + Q  AI
Sbjct: 364 RTQYDLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMERFELDDIQAQAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RL  L  LE  +I+ EL  L  +     ++L   ++    +  E  EVK  F     
Sbjct: 424 VQMRLGQLTNLEREKIEEELAALETKIANFKAILADEQRILQIVKEEALEVKAKF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R T  E          + +I  E + + ++N G+I+          +     ++ L
Sbjct: 479 -GDERRTRIE--NVSGEVDVEDLIPVEDVVLTLTNFGYIKRLPAAAYHSQRRGGRGVNGL 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +E D  +      T D +L  ++ G+ Y L    +   S    G  +  ++ +  +++
Sbjct: 536 TRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTSKGMNVANILPVAQDEN 595

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I        ++  C L++V+ KG        E     + G   + +  ++++  V+   G
Sbjct: 596 ITAMIKVPKFEEDCYLVMVTKKGIVKRTSLKEYDTARKAGVIGILLEEDDELVGVLLTDG 655

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL-TWIDSA 715
             H+ V   N   + F       M R   GV+  S + G    V+   +  G  + +   
Sbjct: 656 SAHILVGTRNGVAIRFVETDARPMGRAAHGVKAISLEGGDY--VVGVTVPNGAGSLLLIT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        +  RGG G        ++G    
Sbjct: 714 ENGYGKRVPFEDFRVQNRGGKGLTSYNINEKTGPVAG 750



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 16/216 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                A ++    E++   V+++ +G ++       D +       +  +E D L   L 
Sbjct: 593 DENITAMIKVPKFEEDCYLVMVTKKGIVKRTSLKEYDTARKAGVIGILLEEDDELVGVLL 652

Query: 557 AHTTDRILLLSTDGKAYT-LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +  IL+ + +G A   +       GR         I L     +V   V +    LL
Sbjct: 653 TDGSAHILVGTRNGVAIRFVETDARPMGRAA--HGVKAISLEGGDYVVGVTVPNGAGSLL 710

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKLL 671
           +++  G    V   +     R GK     +  EK   V    V    D    +  +  ++
Sbjct: 711 LITENGYGKRVPFEDFRVQNRGGKGLTSYNINEKTGPVAGLRVVEESDDALFISSDGVVI 770

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
              + +IP  SR  +GVR+     G  + V+     
Sbjct: 771 RVPVAEIPVYSRYAQGVRVMRV--GEETKVVTVTSA 804


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/769 (33%), Positives = 401/769 (52%), Gaps = 30/769 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +    S       V    L   + + ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E
Sbjct: 31  ETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNE 90

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G+       KSAR VG+VIGK HPHGD +VYD++VR+AQPF    PL+ G GNFG+IDG
Sbjct: 91  SGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDG 150

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTEAR+ + A  +L+ +D++ VD++  Y+E   EP V P++FPNLL NG+ GI
Sbjct: 151 DSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGI 210

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A   +IDNP++S+++LL+ + GPDFPTG  I+  RE I E+Y
Sbjct: 211 AVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIM-GREGIREAY 269

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  + +  RG   I V EIPY V +++L+EKI ELI  K++P + ++ D
Sbjct: 270 ETGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHD 329

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +      ++    ++  P +++  ++  + M+T F  NM  L    VP  + L  IL  
Sbjct: 330 GADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDD-VPHTLSLKQILSY 388

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           ++AH+ +V+ RR+ + +Q  + R  I++GLLIA  NIDE+I IIR+     + +  ++  
Sbjct: 389 YIAHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIEN 448

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L E Q +AIL +RLR L  LE  ++  EL +L         +L         I  E+ 
Sbjct: 449 FNLDEIQANAILEMRLRRLTGLEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMG 508

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------S 532
           E+K+ FS       RRT     S  D     + +I  E + V ++  G+++         
Sbjct: 509 EIKKKFSSK-----RRTQIQRASAKD--IDVEDLIADEDMVVTVTKTGYVKRLPLTTYRQ 561

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
            K     +  ++ KE D ++    A T   +L  S+ GK Y L    L        G AI
Sbjct: 562 QKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTAI 621

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L   + I        +     L+  +S G       S      R G   + ++  
Sbjct: 622 VNLLSLEKGESIAAVIATKDFPKEEYLMFATSAGMVKKTSMSLYDRTRRDGLIAINLNDG 681

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFK 704
           +++  V +V  G+ V +V    K +++   +   M R  KGVR      D  + ++   K
Sbjct: 682 DELISVKRVSDGEKVFMVSSAGKAIVWDESEARAMGRDTKGVRGMKVPADEHVLEMSIAK 741

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               L  I    + Y +  +     L  RGG G        + G+  ++
Sbjct: 742 PQADLFVIT--EKGYGKRTSVYEYPLHHRGGQGVYTITMTRKKGELAAA 788


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/777 (30%), Positives = 393/777 (50%), Gaps = 41/777 (5%)

Query: 6   ISNSNTLVE----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S+   L E    + ++ V L   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A 
Sbjct: 1   MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + KSAR V E +G  HPHGD S+YD+LVRLAQP+  RYPLI GQGNFG+ 
Sbjct: 61  FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D AAA RYTEAR+T +A  +L+ + E+ VDF   Y+ +  EP V PS+ PNLL NG+ 
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN+ E+ +A    ++NPE   E      +E + GPDFPT  +IV S +
Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGS-Q 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG  R+R+   +EEV +G+  ++VTE+PYQV    LI  IAE +   ++  
Sbjct: 240 GIRDAYMTGRGSIRMRSVVDIEEV-KGTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKG 298

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +  I D+ S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + 
Sbjct: 299 ISKIEDQSSDRAGLRIVITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLR 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413
           LD +++ ++AH+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR   N +  
Sbjct: 358 LDQMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAA 417

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++    + E Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q  
Sbjct: 418 RTGLMDLLDIDEIQADAILAMQLRRLSALERQKIIDELAEIEREIADLKDILERPERQRA 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---- 529
            +  E++EV + +        RRT              + +I +E + V I+  G+    
Sbjct: 478 IVRDELKEVVDKYGD-----DRRTRIIPAEG---DVTDEDLIAREDVVVTITETGYAKRT 529

Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
                RS K     +     K+ D +     + T D +L  +T G+ Y   A  L     
Sbjct: 530 KTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTKGRVYRAKAYELPEANR 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+     + I        Y+    L++ +  G     +     +N   G  
Sbjct: 590 TARGQHVANLLAFQPEERIAQVIRISGYEDAPYLVLATRNGLVKKSKLDAFDSNRSGGIA 649

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG 696
            + +  ++++      +  D + +V +  + + F+ D   +  M R   GV+   + D  
Sbjct: 650 AINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETLRPMGRQTSGVQGMRFNDDD 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     +    + ++G  Y +  +        RGG G L  +  P+ G  + +
Sbjct: 710 ELLSLTVVRPDTFLLVATSG-GYAKRTDIEEYSAQGRGGKGVLTIQHDPKRGDLVGA 765



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        ++ +  E  P  V+ +  G ++  K  + D      ++A++ +  D L  A
Sbjct: 603 QPEERIAQVIRISGYEDAPYLVLATRNGLVKKSKLDAFDSNRSGGIAAINLRGDDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S  G++    A +  + R  G     +  +  N + ++++  V     
Sbjct: 663 RLCSADDDLLLVSKKGQSIRFTADD-ETLRPMGRQTSGVQGMRFNDDDELLSLTVVRPDT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENR 668
            LLV +S G A   +  E  A  R GK  L +       + +  +V      +  +    
Sbjct: 722 FLLVATSGGYAKRTDIEEYSAQGRGGKGVLTIQHDPKRGDLVGALVVDIDSEIYAITSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++     Q+ +  R  KGVRL +  DG     I     E
Sbjct: 782 GVIRTKAKQVRKAGRQTKGVRLMNLSDGDNLIAIARNADE 821


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/771 (30%), Positives = 399/771 (51%), Gaps = 38/771 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +SN    + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+ 
Sbjct: 1   MDDSNIF--DKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELN 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  +K ARIVG+ +GK HPHGD S+Y +LV LAQ +  RYPL+ G GNFG++DGD 
Sbjct: 59  NGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++++  +   + +D VDF   ++E + EP + PS+FPNLL NG  GIAV
Sbjct: 119 AAAMRYTEARLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           GMAT+IP HN++E  +  + +IDN      +  I++LLE + GPDFPTG   +  R+ I 
Sbjct: 179 GMATNIPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGA-AILGRKGID 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG  +VRA   +E +  G   I+VTE+PY V K+RLIEKIA+L+  KRI  + +
Sbjct: 238 QAYRTGRGKIKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITE 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      +     + ++ ++L++ +F  + ++  F + M  L   + P+V+ L  +
Sbjct: 298 LRDESDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQ-PKVLNLKEM 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L  +L H+++V+ RR+ + +     R  IL+GLL A   IDE+I IIR      + +  +
Sbjct: 357 LVHYLNHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF  ++ Q  AI+++RLR+L  LE  ++++E D L  +  +++++L   K     I  
Sbjct: 417 IKRFEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAILADEKVLLGVIRE 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           EI  +++ +      G  R T  E+   D +   +A+I ++   +  S  G+I+      
Sbjct: 477 EILLIRDKY------GDDRRTSIEMDMEDLSD--EALIPRKDAIITFSKLGYIKRMTPDN 528

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  ++  + D ++      T + I+  +  G+ Y L    +   S    G
Sbjct: 529 FHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLKGYEIPESSRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L   + I              L++ +  G        E     + G   + +
Sbjct: 589 VNIINLLQLQPEEKITAIIPLSEDGKQHYLVMATRNGIVKKTGFDEYKNVRKNGLAAISL 648

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V +    + + +V    + + F +  + E  R   GV   +   G   +V+ 
Sbjct: 649 REGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRETGRVSMGVIGMNL--GDTDEVVG 706

Query: 703 FKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +I  EG   +  + +   +        +  RGG G    K   ++G  + 
Sbjct: 707 MQIHSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKITEKTGYVIG 757



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +      A +  +   K+   V+ +  G ++              L+A+  +EGD L   
Sbjct: 598 QPEEKITAIIPLSEDGKQHYLVMATRNGIVKKTGFDEYKNVRKNGLAAISLREGDELIEV 657

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + I L+S +G+       ++         +  + +L    ++V   ++     L
Sbjct: 658 KQTDENEDIFLVSREGQCIRFKLQDVRETGRVSMGVIGM-NLGDTDEVVGMQIHSEGDDL 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           L+VS KG        E     R GK        EK   V+ V      + + ++     +
Sbjct: 717 LIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKITEKTGYVIGVKTIKPEEEIMLITTEGIV 776

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           +    D I  + R   GV+L +        V    
Sbjct: 777 IRMKSDSISVIGRNTSGVKLINIDADSDIKVASVA 811


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/798 (32%), Positives = 404/798 (50%), Gaps = 72/798 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+  A+KKSA
Sbjct: 8   ITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDS AA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ E  LA ID+  IS+E L+ +I GPDFPTG II   R  I E+YR GRG   +RAR 
Sbjct: 188 TEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGR-GIAEAYRTGRGKIYLRARA 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            V  +       I+V EIPYQV K++LIEKIAEL+  KR+  +  +RDES +D   V+  
Sbjct: 247 EVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  L  G+ P+++PL  IL+ +++HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQ-PKILPLKEILQSFVSHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L++A  +ID II +IR+                          
Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + LTE Q  AIL+LRL+ L  +E  ++  E
Sbjct: 426 RSSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDE 485

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
             +LL +  ++ S+L + ++    I  E+  +KE +        RRT        +    
Sbjct: 486 YKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDP-----RRTNII---VNNLEIN 537

Query: 511 QQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S++G+++          +      SA   K  D +   L A+T D 
Sbjct: 538 NEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDT 597

Query: 563 ILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           IL  S+ G  Y +    L        G  I  L+ L  N+ I        YD+   + + 
Sbjct: 598 ILCFSSKGSLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDAGHHVFMA 657

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G              + G   + ++  +++  V    G + V +   + K + FS  
Sbjct: 658 TACGIVKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRFSES 717

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           ++  + R   G+R     D      +     EG   +      Y +           R  
Sbjct: 718 KVRSVGRKAAGMRGIKLNDDDRLVSLIIPQKEG-EILTITKNGYGKRTLAEEYPTKGRAT 776

Query: 736 VGSLVPKGFPRSGKFLSS 753
            G L  K   R+G  +++
Sbjct: 777 KGVLSIKTSERNGNVVAA 794



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 12/182 (6%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +     + A++  EGD L        ++ ++L STDGKA  
Sbjct: 654 VFMATACGIVKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVR 713

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                + S       ++  I LN +  +V+  +     ++L ++  G        E    
Sbjct: 714 FSESKVRSVGRKAAGMRG-IKLNDDDRLVSLIIPQKEGEILTITKNGYGKRTLAEEYPTK 772

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R  K  L + + E+    +  +  +T D + ++ +   L+   + +I    R  +GVRL
Sbjct: 773 GRATKGVLSIKTSERNGNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRL 832

Query: 690 QS 691
             
Sbjct: 833 IR 834


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/758 (35%), Positives = 445/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   + E+ V+ ++L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDQIEINEDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LKNSAKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  AE++L  + +  VD++  ++    EPV+ P++ PN+L NG +GIA
Sbjct: 121 SFAAMRYTESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+  A + L+ +P  S++ L E + GPDFPT   I+  R  ++  Y 
Sbjct: 181 VGMATDIPPHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHELIRMYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        IV+T +P+QV  +R++E+IA+ + AK++P+++D+RDE
Sbjct: 241 TGRGSIKMRAVYTREGSD-----IVITALPHQVSGARILEQIAQQMNAKKLPMVQDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   P+V  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGLYDILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  +  R+  L+GLLIA+LNIDE+I IIR ED PKP ++ RF 
Sbjct: 356 EWLEFRITTVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDPKPRLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR L KLEE +I+ E   L  E++ ++S+L S ++  N+I  E+   
Sbjct: 416 ISDIQAEAILELKLRHLAKLEEMKIRGEQAELEKERKDLESVLGSAQKLKNKIVKELEAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E     +A  +  ++  EP+TV++S +GW+R+ K H +D + 
Sbjct: 476 IERYGDA-----RRSPLIEREE-ARAMDETELVGAEPVTVILSQKGWVRAAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+L       +   ++ + + G++YTLPA  L S RG GE +   +        
Sbjct: 530 LSYKTGDALLGIAQGKSNQTVIFIDSTGRSYTLPAHGLPSARGQGEPLIGKLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     + L+ S  G  F+++ S+     + GK  L V    K+    KV+    +
Sbjct: 590 EALLMGADHDRYLLASDAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDRE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
           +VA V  + +LL+F + ++PE++RGKG ++          ++  + DV+     + L  I
Sbjct: 650 YVAAVANDGRLLVFPLKELPELARGKGNQMMGIPSAKAKAREEYLVDVLLMTEADQL-LI 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R      +DL  +LG+RG  G+ +P+GF    + 
Sbjct: 709 CSGKRQLTMKFSDLQHYLGERGRRGNKLPRGFQSVDRL 746


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/756 (33%), Positives = 414/756 (54%), Gaps = 30/756 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++  ++   +E+ +  Y++S I +RA+PD+RDG KPVHRRI+++M++ G    A F KSA
Sbjct: 24  LEHRTVERVMEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RI+G+V+GK HPHGD ++YDS+VRLAQ +  RY L+ GQGNFG++ GD  AA+RYTEAR+
Sbjct: 84  RIIGDVMGKYHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARL 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + AE +L  ++++ VDFRD ++  + EP+V P+K PNLL NG  GIAVGMATSIP+HN+
Sbjct: 144 DKPAEELLADIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNL 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LIDNPE +++ LL+++ GPDFPTG I+      + ++Y+ GRG   +RA  
Sbjct: 204 GELVDATVELIDNPEATVDDLLKHVKGPDFPTGAIVYGG-APMWQAYQTGRGSVTIRAVA 262

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG   IVVTE+PY V K+ LIEKIAEL+  K+I  + D+RDESA     V+   
Sbjct: 263 NIEETKRGRHRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIEL 322

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +   P  ++  ++ L+ ++T F  NM  L  G+ P+++ L  IL E++ HRR V+ RR+
Sbjct: 323 KKDAYPKKVLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F ++  + R  IL+G  IA  +IDE+I  IR     ++ +  +++RF L+E Q  AIL 
Sbjct: 383 EFELKKAEARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIARFGLSEIQAKAILA 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L  LE   I++EL  LLA  EK+  +L   ++  N I  E+ E+KE +       
Sbjct: 443 MQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKNELIEMKEKYGD----- 497

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
           +RR+              + +I +E   V++++  +I+                   +  
Sbjct: 498 QRRSKMINHEL--GKFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKGKRGMTT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIV 603
           KE D ++  + A T D +L  +  G+ + L A  + +   +  G A   L+ L   + I 
Sbjct: 556 KETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLLQLQPEEKIT 615

Query: 604 TAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               ++        L + + KG        +       G   +K+   ++++ + + +G 
Sbjct: 616 AIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWIKRSSGN 675

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
           D + +     + + F+      M R  +GVR    +      V+   I  +  T +  + 
Sbjct: 676 DDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPN--DSVVGMDIANDDRTLLVISE 733

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y ++         KRGGVG        ++G  +S
Sbjct: 734 NGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIIS 769



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +       +   + +    + + +G I+              L A+   +GD L+    
Sbjct: 612 EKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWIKR 671

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKL 614
           +   D IL+ ++ G+A      +    R  G A + +  + L  N  +V   + +    L
Sbjct: 672 SSGNDDILISTSAGQAIRFNEKD---ARSMGRAARGVRGVRLRPNDSVVGMDIANDDRTL 728

Query: 615 LVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRK 669
           LV+S  G     + S   ++ R G   K  +  +    +  V  +  D +   +V    +
Sbjct: 729 LVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQGQ 788

Query: 670 LLIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVICFK 704
            +  S+  IP + R   GVR+     D  ++ V    
Sbjct: 789 TIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMS 825



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 25/214 (11%)

Query: 465 LNSGKQQWNQIACEIREVKEIF---------------SKSTDLGRRRTTFCEVSRADKAT 509
           L   ++    I  E     + +                   ++        ++   D+  
Sbjct: 608 LQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELR 667

Query: 510 LQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             +     + I +  S    IR        +   +  +  +  +  DS+     A+    
Sbjct: 668 WIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSVVGMDIANDDRT 727

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKG 621
           +L++S +G        N  S +  G  I+  +       I++         + L+VS++G
Sbjct: 728 LLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQG 787

Query: 622 NAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653
               V   +I  +  T +G   +K S ++ +  V
Sbjct: 788 QTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASV 821


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/752 (36%), Positives = 452/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S+E+LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQSDAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S   KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLRERSE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS +      +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAVAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/776 (30%), Positives = 396/776 (51%), Gaps = 40/776 (5%)

Query: 6   ISNSN--TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++    T   + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM +
Sbjct: 1   MTDPTDPTPSRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      + KSAR V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+   
Sbjct: 61  QGFRPDRGYVKSARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSRGN 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+  +A  +++ +DE+ VDF   Y+ +  EP V P++ PNLL NG+ GI
Sbjct: 121 DGAAAMRYTEARLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +A    +++ +     ++E + E + GPDFPT G+IV   + +
Sbjct: 181 AVGMATNIPPHNLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIV-GTDGV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG  R+R    VEE  +G   +V+TE+PYQV    +I  IAE +   +I  + 
Sbjct: 240 HDAYTTGRGSIRMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGIS 299

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            I DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD
Sbjct: 300 AIDDETSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDG-VPRTLRLD 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL+ ++AH+ EV+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  + 
Sbjct: 359 QILRLYIAHQIEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q DAIL ++LR L  LE  +I  EL  +         +L   ++Q   +
Sbjct: 419 GLMELLDVDEIQADAILAMQLRRLAALERQKIIDELAEIEEAIADYQDILARPERQRAIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------ 529
             E++E+ +          RRT       A+     + +I +E + V I+  G+      
Sbjct: 479 RDELKEIVDRHGDE-----RRTRII---AAEGEVRDEDLIAREDVVVTITETGYAKRTKT 530

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
              RS K     +     K+ D +       T D IL  +T G+ Y + A  L   S   
Sbjct: 531 DLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPETSRAA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+ L  ++ I        Y+ +  L++ + +G     + +E  +N   G   +
Sbjct: 591 RGQHVANLLALQTDEKIAQVIHLQTYEDSPYLVLATKRGLTKKSKLTEFDSNRSGGLIAV 650

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGIS 698
            +  E+++       + D + +V E+ + + F  +   +  M R   GV    + +    
Sbjct: 651 NLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNED--D 708

Query: 699 DVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            ++   +  +G   + +    Y +        +  RGG G L  +   R G  + +
Sbjct: 709 QLLAMNVVRDGAYLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYDRRRGGLVGA 764



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 79/224 (35%), Gaps = 14/224 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +     E  P  V+ + RG  +  K    D +      A++ ++ D L  A
Sbjct: 602 QTDEKIAQVIHLQTYEDSPYLVLATKRGLTKKSKLTEFDSNRSGGLIAVNLRDEDELVGA 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
               + D +LL+S  G++    A +    R  G A   ++ +  N +  ++   V     
Sbjct: 662 ALCSSDDDLLLVSEHGQSIRFHAND-EQLRPMGRATSGVLGMRFNEDDQLLAMNVVRDGA 720

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
            LLV +S G A      E     R GK  L V        +   V V  D  +  + +  
Sbjct: 721 YLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITQGG 780

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            ++     Q+    R  KGVRL +  +G     +     +    
Sbjct: 781 GVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIAVARNDEDSAEV 824


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/746 (34%), Positives = 394/746 (52%), Gaps = 29/746 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G   KKSAR+VGEV+GK
Sbjct: 1   MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYDSLVRL Q F  RYPLI GQGNFG+IDGDS AA RYTE RM Q+A  +L+
Sbjct: 61  FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++   EP V PS  PNLL NG SGIAVGMAT+IP  N++E+ +  +A
Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRG 264
           LI NPE+ +  L++++I PDFPT GI +   E + ++Y  GRG   +RAR  +E     G
Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGI-IYGYEGVRQAYLTGRGKVVIRARALIEVTQKNG 239

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              IVVTE+PYQV K RLIEKI EL+  K+I  + DIRDES  D   ++    R     +
Sbjct: 240 RESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKV 299

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + M+  F + M  L  G VP+++ L  +++ ++ HR E++ RR+ F + A +
Sbjct: 300 VLNNLYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAE 358

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRK 441
           RR  IL+GL I   N+DE+I  IR            + RF+L+E Q  AIL +RL+ L  
Sbjct: 359 RRAHILEGLKICLDNLDEVITTIRESPDANTAQDRLMERFALSEIQAKAILEMRLQRLTG 418

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E  +I +E    LA  +++  +L S ++Q   I  E+ +VKE++        RRT   E
Sbjct: 419 MERQKIDAEYKETLATIDELRLILQSPERQMEIIRTELLKVKEVYGDE-----RRT---E 470

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553
           +   +     + MI +E + + +++ G+I+                ++    K  D ++ 
Sbjct: 471 IVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTGAQAKHDDFIEH 530

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI---VTAFVY 608
              A T + IL  +  G+ Y L    +        G A+  +++L+ ++ I   +    +
Sbjct: 531 MFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIMELHPDEKIKAYINIRNF 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
           D    +++ ++ G        E     R G   + +   + +       GDH V +   +
Sbjct: 591 DEPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDALLDARLTDGDHQVILAKSS 650

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             ++ F   Q+  M R   GV+  +   G     +          +      + +     
Sbjct: 651 GLVVRFPEVQVRPMGRTAMGVKGITLDRGEKCIAMVTTKRTDTALLAVTDNGFGKRSRVE 710

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L KRG  G +  K   + G  + 
Sbjct: 711 DYRLTKRGARGVITLKAHEKIGSLVG 736



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 68/213 (31%), Gaps = 13/213 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                KA +     ++    ++ +  G ++              ++A+   EGD+L  A 
Sbjct: 577 PDEKIKAYINIRNFDEPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDALLDAR 636

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKL 614
                 +++L  + G     P   +         ++  I L+  +  +       +   L
Sbjct: 637 LTDGDHQVILAKSSGLVVRFPEVQVRPMGRTAMGVKG-ITLDRGEKCIAMVTTKRTDTAL 695

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKL 670
           L V+  G        +     R  +  + + + EK+  +V        D + ++  +  +
Sbjct: 696 LAVTDNGFGKRSRVEDYRLTKRGARGVITLKAHEKIGSLVGLLDVNDDDDLILITTHGIV 755

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               +  I    R   GV+L     G     + 
Sbjct: 756 NRQHVSDIRITGRNTSGVKLIRLMAGDTISALA 788


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 TQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  SV L AL   EGD L  A
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILISA 725

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 726 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 784

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 785 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 844

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 845 VRTRVGEVSSLGRNTQGVTLIKLASD 870


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 88/246 (35%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     K  ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKVRIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/762 (31%), Positives = 394/762 (51%), Gaps = 33/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E      +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +
Sbjct: 5   IKEQFPQREISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYT 124

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM+++A  +++ +++D VDF   Y+ E+ EP V P++FPNLL NGT+GIAVGM T+IP
Sbjct: 125 EARMSKIAHEMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  A   L+ N + +  +L+E + GPDFPTGGI++  +  I ++Y  G+G   V
Sbjct: 185 THNLSEVIGAIKILMQNADATTNELMEALPGPDFPTGGIVI-GKSGIRKAYETGKGTIIV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+V EIPY V K++L+E+IAEL   KR+  +  +RDES  +   V
Sbjct: 244 RAKLDIETLSSGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +     +++ +++  + ++T F +NM  +  G VP+ + L  IL+ +L H+ EV+
Sbjct: 304 VIECRKDASASVIVNNLYKYTQLQTNFGINMVAIVNG-VPRTLSLKEILQNYLLHQEEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RRS F     + R  IL+GL IA  +IDEI+ I+R     D+ K   +  + L++ Q  
Sbjct: 363 RRRSIFEKNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIEDYKLSDKQSQ 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE  +I  E   L+A+ + ++ +L S   ++  I  E+ E++  F   
Sbjct: 423 AILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQVLGSETMRYQIIYDELIEIESKFGD- 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT              + +IE+  + V ++  G+I+                + 
Sbjct: 482 ----DRRTELMVGEIH--NIDDEDLIEESNVIVTLTQNGYIKRIDDVEFRAQNRGGTGVK 535

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
            +   + D ++  L   T D +L  +  G+ +      +        G  +  L++L  +
Sbjct: 536 GMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPEFGRAAKGIPVVNLLNLQQD 595

Query: 600 QDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + +                 LL V+  G       S+       G   LK++  +++  V
Sbjct: 596 ETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKV 655

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLT 710
           V  +GD  + +   +   + F    +  M R   GVR     DG    V+   +      
Sbjct: 656 VLTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRGIRLNDG--DQVVGMSVLGPDDN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    + Y +        +  RGG G        ++G  + 
Sbjct: 714 VLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVG 755



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 13/212 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
           V      T  +    KE + + ++  G ++   +          L AL   EGD L   +
Sbjct: 598 VQAMINVTPIEDAEVKEHL-LFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKVV 656

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                D I++ S DG A +    N+ S       ++  I LN    +V   V      +L
Sbjct: 657 LTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRG-IRLNDGDQVVGMSVLGPDDNVL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLL 671
           VV+ KG       SE     R GK    ++  EK   +  +  V+G+  + ++      +
Sbjct: 716 VVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVGLTTVSGEEDIMLMTNQGIAI 775

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            F    I +  R   GVRL    +      I 
Sbjct: 776 RFHAKNISQTGRATQGVRLIRLAEDSYVSAIA 807


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 391/762 (51%), Gaps = 28/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+      L+ NP+ +   L++ I GPDFPTGG+I+  R  I+ +Y  G+G
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES   
Sbjct: 241 NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R     +++ ++F  + M+T F +NM  +  G     + L  +L+ +L H+
Sbjct: 301 GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPH-FLTLKQMLQYYLDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIRN    D  K  ++SRF L +
Sbjct: 360 EDVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ 
Sbjct: 420 KQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT     +    +   + +IEK+ + + +++ G+I+              
Sbjct: 480 FGD-----DRRTEIT--ASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  ++ D ++   ++ T D +L  +  GK Y+  A  +   S    G  I  L+ 
Sbjct: 533 RGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQ 592

Query: 596 LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + I              L  ++  G        E       G   L +   +++  
Sbjct: 593 LDKGEKIQAMINVPEGHEDGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+   G    ++G +      F    +  M R   GVR  + ++     V    +  G  
Sbjct: 653 VLTTDGKQNIIIGTHMGYAASFKESDVRVMGRSAAGVRGINLRENDYV-VGSEVLKPGAE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +        +  RGG G L  K   ++G    
Sbjct: 712 VLVISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAG 753



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 12/204 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +A +      ++     I+  G ++              L AL  ++GD L   L  
Sbjct: 597 EKIQAMINVPEGHEDGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSNVLTT 656

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                I++ +  G A +    ++         ++  I+L  N  +V + V     ++LV+
Sbjct: 657 DGKQNIIIGTHMGYAASFKESDVRVMGRSAAGVRG-INLRENDYVVGSEVLKPGAEVLVI 715

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIF 673
           S  G       SE     R GK  L     +K   +  +  V G   + ++  +  ++ F
Sbjct: 716 SENGYGKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAGMTVVDGTTDIMLITTDGIMIRF 775

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGG 696
             + + +  R   GVRL    +G 
Sbjct: 776 KTEDVSQTGRATMGVRLIKLGEGD 799


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 442/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+++I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWSEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  FR+  +  R+ IL+GLLIAYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +TE Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S ++    +  E+   
Sbjct: 416 ITETQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLNTLLKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E +    A  ++ +I  EP+TV++S++GW+R+ K H VD++ 
Sbjct: 476 AEKYGD-----DRRTPLVERA-TAVALTEKELIPSEPVTVILSDKGWVRAAKGHDVDVAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +  + + LST G+ Y L +  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+    ++I   + GK  L V    ++    K+     D
Sbjct: 590 RHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +  + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPSDLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/758 (33%), Positives = 403/758 (53%), Gaps = 32/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+  D+   +KK
Sbjct: 5   EKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RYTE 
Sbjct: 65  SARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYTEI 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A+ +++ +D++ VD    Y+E  +EP + P+K P LL NG+SGIAVGMATSIP H
Sbjct: 125 RLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ EA   LIDNP+I+ E+L++ + GPDFPT GI +  R  I ++Y  GRG  +VRA
Sbjct: 185 NLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGI-IHGRSGIYDAYSTGRGKVKVRA 243

Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE   +     IVVTE+PY V K+ LIEKIAELI  K+I  +  +RDES  +   + 
Sbjct: 244 RVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +     +++  ++  + ME+ F +    +     P+V+ L  IL+ ++ HR++++ 
Sbjct: 304 LGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNN-RPEVLTLKQILEYFVLHRKDIII 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           +R+ F ++  + R  IL+GL +A  NIDE+I +I+      + K  ++SRF +T  Q  A
Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISRFDMTPIQAQA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE  +I  E DNLL +  +   +L S     N I  E+ ++K  +    
Sbjct: 423 VLDMRLQRLTGLEREKIIEEYDNLLKDIARYREILASETLVLNIIKDELTQIKNEYGD-- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   + +        + +I +E + V +S  G+I+                 +A
Sbjct: 481 ---LRRTEIIDETEN---ISIEDLIVEEDMVVTVSKDGYIKRTPASIYNSQSRGGKGKTA 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +  KE D + +   A T    L  +  GK Y     ++        G+AI  L++    +
Sbjct: 535 MMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAGRTSKGKAIVNLLNFAEGE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            + T      ++    +++ +  G     +          G   LK+   +++  V    
Sbjct: 595 KLTTVLAVKDFEPGSFVIMATRSGQIKRTDIMAYSRPRAGGIKALKLDEGDELIAVRITD 654

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
           G  +V V     K + F    I    R   G+R      G    ++  ++   G T    
Sbjct: 655 GTLNVFVCSAMGKSIRFHESDIRATGRVTGGIRGMRLAKG--DRIVGMEVLTHGQTLFAV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  +     + KRGG G +  K   R+G+ ++
Sbjct: 713 TENGFGKRTSIDEYPVHKRGGKGVICIKTSERNGQVVA 750



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 13/204 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E     ++ +  G I+     +        + AL   EGD L        T  + + S 
Sbjct: 605 FEPGSFVIMATRSGQIKRTDIMAYSRPRAGGIKALKLDEGDELIAVRITDGTLNVFVCSA 664

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK+      ++ +       I+ +  L     IV   V      L  V+  G       
Sbjct: 665 MGKSIRFHESDIRATGRVTGGIRGM-RLAKGDRIVGMEVLTHGQTLFAVTENGFGKRTSI 723

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E   + R GK  + + + E+   VV +      D + ++ ++ K++   I  I  +SR 
Sbjct: 724 DEYPVHKRGGKGVICIKTSERNGQVVAILIVDEDDDLMLMADSGKIIRTPISGISVISRN 783

Query: 684 GKGVRLQSYKDGGISDVICFKICE 707
            +GV+L + ++     +   ++ E
Sbjct: 784 TQGVKLIN-REATEKVIGAARLAE 806


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 401/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  EA   ++ NP+ +   L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H+ EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYIKHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+L+A    +  +L + ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDILANPERVKAIIIEEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +      R T   +     +   + +IE+E + +  SN+G+I+          K     +
Sbjct: 479 A------RRTELMIGEV-LSLEDEDLIEEEDVLITFSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D +K  +   T D +L  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYGRTAKGLPVVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G       SE     + G   L +   +++  V+
Sbjct: 592 EETIQTIIKAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQNGLRALNLKEGDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++G      + F+   I +M R   GVR    +D  +  V   +I +    +
Sbjct: 652 MTNGQEDIIIGTRLGYSVRFNESSIRQMGRSATGVRGVKLRDQDLV-VGAARITDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +           RGG G        ++G    
Sbjct: 711 IITENGYGKKTLASEYPTKGRGGKGIKTANITAKNGPIAG 750



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +    +       + +G ++   +          L AL+ KEGD L 
Sbjct: 589 LDEEETIQTIIKAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQNGLRALNLKEGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L  +  + I++ +  G +      ++         ++  + L     +V A       
Sbjct: 649 NVLMTNGQEDIIIGTRLGYSVRFNESSIRQMGRSATGVRG-VKLRDQDLVVGAARITDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++  G       SE     R GK      +   +     LV     + + ++    
Sbjct: 708 EVLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKNGPIAGLVTVSGQEDIMIITNKG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++   I  + +  R   GV++        + ++ F + E
Sbjct: 768 VIIRTHISDVSQTGRATLGVKVMRL--DQDAKIVTFALVE 805


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/768 (30%), Positives = 405/768 (52%), Gaps = 35/768 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ + E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGDSAAA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ +++  +L  +++D VDF+  ++E + EPVV PS+FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E  +   A++DNPEI+I++L++YI GPDFPT   I+  +  I E+++ GRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKII-GKRGIREAFKTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
              VR+   +EE+      I++TEIPY V K+RL+EKIA+L+  KRI  +  I+DES   
Sbjct: 241 KLVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGRE 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS----MGRVPQVMPLDGILKE 363
           +   ++    R  +P++++  ++  + ++  F +NM  +         P+V+ L  I+  
Sbjct: 301 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDY 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           ++AH+ +V+ RR+ F +   + R  IL+GL  A  ++DE+I  IRN       K  +  R
Sbjct: 361 YIAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSER 420

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  ++ Q  AI+++RL  L  LE  ++++E + LL + +    +L +       I  E+ 
Sbjct: 421 FGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELLEKIKYYKDVLANEILVHQIIKDELS 480

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            +K  ++       RRT    +   +     + +I++E   + +++ G+I+         
Sbjct: 481 VIKNKYADE-----RRTK---IEIDEDEIDIEDLIQEEESVITMTHFGYIKRLPADTYKS 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
            +     +  L  +E D +K      T   I+  +  G+ Y L A  +     +  G AI
Sbjct: 533 QRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAI 592

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L+ ++ + T      Y     L++ +  G     +  E     + G   + +   
Sbjct: 593 VNLLQLDGDEKVTTVIPIQEYKEGLYLIMATKNGLVKKTDLMEYDNIRKGGLAAVSLREN 652

Query: 648 EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G+   ++   N   + F       + R  +GV+     +G    VI  ++
Sbjct: 653 DQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPIGRVSQGVKGIELDEG--DFVIGMEV 710

Query: 706 C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           C +  T +      + +        +  RGG G L  +   ++GK + 
Sbjct: 711 CTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKSIG 758



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ +  G ++       D      L+A+  +E D L           I+L + +G A   
Sbjct: 620 IMATKNGLVKKTDLMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRF 679

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                   R  G   Q +  I+L+    ++   V      LLVV+  G     E  E   
Sbjct: 680 RE---TDARPIGRVSQGVKGIELDEGDFVIGMEVCTDNTTLLVVTENGFGKRTELDEYKV 736

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
            TR GK  L       + + + +++    D + ++  +  ++   + +I  + R   GV 
Sbjct: 737 QTRGGKGVLTYRITEKTGKSIGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVT 796

Query: 689 LQSYKDG 695
           L    +G
Sbjct: 797 LMRMSEG 803


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/769 (31%), Positives = 399/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 20  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKC 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 80  ARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 140 MAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   ++NPE S E+LL    + I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 200 LREVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 259 MRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+AH+ E
Sbjct: 318 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E F 
Sbjct: 437 ANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKFG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  R+T        +     + +I +E I V ++  G+I+          K     
Sbjct: 497 D-----DRKTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +     + T   +L  +  G+ Y + A  L        G+ +  L+   
Sbjct: 549 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQ 608

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 609 PDETIAQIRAIRDYEAVPYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDE 668

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V + D + ++    + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 669 LIGAELVSSDDDLLLISRKAQSIRFTATDDTLRPMGRATSGVKGMSFREG--DELLSMNV 726

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 727 VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 775



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 37/269 (13%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +              E  P  V+ +  G ++      
Sbjct: 585 KAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKAGLVKKTSLKD 644

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A    + D +LL+S   ++    A +  + R  
Sbjct: 645 YDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQSIRFTATD-DTLRPM 703

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 704 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAA 763

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +  +  ++   +++I E  R   GV+L +   G    
Sbjct: 764 KIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINL--GKRDA 821

Query: 700 VICF----------KICEGLTWIDSAGRS 718
           V+            +  +G   +D     
Sbjct: 822 VVGIARNAEAGREAEEVDGDVVVDETADG 850


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/787 (31%), Positives = 405/787 (51%), Gaps = 47/787 (5%)

Query: 1   MGVDNIS---NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  +N          V   V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+
Sbjct: 1   MTDENTPVTPEEGGDVAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF+D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP H ++E+   A   ++NPE S E+LL    E I GPDFPTG ++V
Sbjct: 181 NGSAGIAVGMATNIPPHTLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVAVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L  G VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+AH+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  +    ++ + Q +AIL ++LR L  LE  +I  E D L A+ ++ + +L S  
Sbjct: 418 VEIARGGLRDLLAIDDIQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +        R+T        +     + +I +E I V ++  G+
Sbjct: 478 RQRGIVSEELAALVEKYGD-----DRKTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 IKRTRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++ I        Y++   L++ +  G        +  +   
Sbjct: 590 EAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G   +++   +    T++  +    Y +        +  RGG+G    K    
Sbjct: 710 KGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGSLVGA 774



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 699 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 758

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +EI    R   G   + +   
Sbjct: 759 IKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKR 818

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 819 DAVVGIAR 826


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/753 (35%), Positives = 443/753 (58%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDLTPDGAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFDISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E+  ++ LL S ++    +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLASERKMNTLLKKELQADSDAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD    A    +   ++ + + G++Y L    L S RG GE +   +       +    
Sbjct: 531 AGDGYLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           + D T KLL+ S  G  F+   +++++  R GK  L + +   +   + +    D +  +
Sbjct: 591 MADDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++     E    +    R
Sbjct: 651 TAAGRMLMFPVGDLPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLT-PESDITLHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLTLKAADLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/828 (31%), Positives = 401/828 (48%), Gaps = 99/828 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M      F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N ++SIE+L+ +I GPDFPTG I +  R+ I ++Y  GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAI-INGRKGIEDAYCTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EIKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IR     +                    
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +LNS ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILNSAERLMQVIREELEKVKAEFGDE-----RRT---EITAASGDINLEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFSTDKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V     G  + +     +++ F+   + 
Sbjct: 656 GIVKKVCLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSYK-----DGGISDVICFKICEGLT----------------------- 710
            M R   GVR             I D    +I +  T                       
Sbjct: 716 SMGRTATGVRGIKLATSDILADDIEDTEIVEIEQEETEDNTAVNLNIDRVVSLVIPRADI 775

Query: 711 -----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +      Y +        +  R   G L  K   R+GK +++
Sbjct: 776 ATSGDILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERNGKVVAA 823



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 44/222 (19%)

Query: 518 EPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +         S  L  L  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGIVKKVCLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHG-EAIQL--------------LIDLNHNQ------------DI 602
              +   A   +     G   I+L              ++++   +             +
Sbjct: 706 VVRFAEKAVRSMGRTATGVRGIKLATSDILADDIEDTEIVEIEQEETEDNTAVNLNIDRV 765

Query: 603 VTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVV 654
           V+  +  +       +L V+  G       +E    +R  K  L +   E+    +  V 
Sbjct: 766 VSLVIPRADIATSGDILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERNGKVVAAVQ 825

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
               D + ++ +   L+   + ++  + R  +GVR+    + 
Sbjct: 826 VDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAED 867


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/753 (35%), Positives = 448/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  +  +L    EE YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTQDGAERRALHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+  R  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKREDGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNLLEILSEWLI 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR   R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 YRRDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFEISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +++
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDLY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D   L +K
Sbjct: 477 GD-----DRRSPLREREE-AKAISESELVPSEPVTIVLSQSGWVRSAKGHDIDPGGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       +    
Sbjct: 531 AGDSYRAAARGKSNQPVVFVDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGAVMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S+ G  F+   S++++  R GK  L +    K+   + +  D   +  +
Sbjct: 591 MEADDQKLLMASNAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDLLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
               ++L+F +  +P++S+GKG ++ S         +  ++ ++     +    +    R
Sbjct: 651 TSAGRMLLFPVGDLPQLSKGKGNKIISIPSAQAASGEDNLAWLLLLT-PQTSVTLHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +DL  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLTLKPDDLQKFRAERGRRGTLLPRGLQRIDRV 742


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/800 (29%), Positives = 393/800 (49%), Gaps = 73/800 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  +++   +   YL Y++S I  RA+PD+RDGFKPVHRRI++AM EMGL     + K 
Sbjct: 2   NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+ +G  HPHGD ++YD+LVRLAQPF  RYP+I GQGNFG++DGD  AA RYTE R
Sbjct: 62  AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D + VDF   Y+E   EP V P+K PNL+ NG++GIAVGMAT+IP HN
Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + +++NP   + ++L+++ GPDFPTGG  +  R  I  +YR GRG F +RA+
Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGG-FIYGRSGIANAYRTGRGRFLMRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++ +G   I+VTEIPYQV K++LIE++A+L+  K I  + DIRDES  D   ++  
Sbjct: 241 ASIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  + M+  F +    +  G+  + +PL   ++ ++ HR +V+ RR
Sbjct: 301 LKRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRE-LPLPDAIRHFIDHRVDVVRRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------------------ 411
           +++ ++    R  IL G  IA  ++D +I IIR                           
Sbjct: 360 TAYLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEA 419

Query: 412 -------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                         P  ++ +  +L+  Q+DAIL L+L  L +L   ++  EL  +    
Sbjct: 420 LAGVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERI 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            + +S+L S K+  + I  E+ +V++ +        RRT   + +        + +I  E
Sbjct: 480 AEYESILASEKKLRSVIVKELEDVRKAYGDE-----RRTQIVDETA---ELQLEDLIADE 531

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+         R  K        +  +E D ++  L   T   +L  +  G
Sbjct: 532 QVAVTVSHSGYLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTG 591

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAF 624
           + Y L    +      G G++I  L++L   + +          +    +   +  G   
Sbjct: 592 RVYWLKIYEIPDVGAAGKGKSIASLLNLQPGEQVRAIMAVRDLTEEGKFIFFATRNGTVK 651

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR 683
                +      +G   + +  E+++       G  +  +       + F  + +  M R
Sbjct: 652 KTPLKDFSNVMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSMGR 711

Query: 684 -GKGVRLQSY-KDGGISDVICFKICEGL---------TWIDSAGRSYNRSENDLLGWLGK 732
             +GVR     K   +  +       G+           +      Y +  +     L  
Sbjct: 712 PARGVRGIDLGKKDHVVGMAATPKDRGVGDDGKACACLILSVTQNGYGKRTDVDEYRLQT 771

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG G +  K   ++GK +S
Sbjct: 772 RGGKGVINVKTTAKNGKVVS 791



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 24/219 (10%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
               + + E+       +  G ++              + A+   E D L  A     + 
Sbjct: 628 IMAVRDLTEEGKFIFFATRNGTVKKTPLKDFSNVMARGIIAIGIDEEDELMGATITDGSQ 687

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL------- 614
            + L + +G A      ++ S       ++  IDL     +V          +       
Sbjct: 688 IVFLATHEGMAIRFDENDVRSMGRPARGVRG-IDLGKKDHVVGMAATPKDRGVGDDGKAC 746

Query: 615 ----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
               L V+  G     +  E    TR GK  + V +  K   VV +        + V+ +
Sbjct: 747 ACLILSVTQNGYGKRTDVDEYRLQTRGGKGVINVKTTAKNGKVVSIQLVDDTSELMVISQ 806

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
             K++      +    R  +GVRL +   +  ++  +  
Sbjct: 807 YGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAAAVVI 845


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/777 (31%), Positives = 402/777 (51%), Gaps = 35/777 (4%)

Query: 1   MGVDNISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M      +   +    ++++   L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSKKPQYDPEEIRYPNQHIEVSPLVPEMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E  L     FKKSA  VG+V+G+ HPHGD SVYD+LVRLAQ F  RY L+ G GNF
Sbjct: 61  YAMYEDNLTADKPFKKSATCVGDVLGRYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD  AAYRYTEAR++++++ +L+ +++D VD+   ++E   EP V PS+FPNLL N
Sbjct: 121 GSIDGDPPAAYRYTEARLSKISDEMLRDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT+IP HN+ E+  A + ++DNPE  +  L+E+I GPDFPT GII+  R  
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINATICVLDNPEAELCDLMEHIKGPDFPTKGIIM-GRSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  GRG   VRAR   EE G+    I+VTEIPYQV K  LI+ +A+ +  KR+  +
Sbjct: 240 IRAAYATGRGRLCVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---VPQVM 355
            DIRDES  +   ++    R  +P +++  +F  + ++T F +NM  L        P+++
Sbjct: 300 SDIRDESDRNGMRIVIELKRDANPQVVLNRLFAQTQLQTTFAINMLALVEVNGKLQPRIL 359

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPK 414
            L  IL E++A++ +V+ RR+ + ++    R  +L+GLLIA  NIDE+I IIR+  D  K
Sbjct: 360 SLRHILDEYIAYQEQVIIRRTKYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYDDAK 419

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RFSL + Q  AIL++RL++L+ L+  ++++E   L A       LL S +     
Sbjct: 420 EKLMERFSLDDVQAQAILDMRLKALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRGV 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+  +++ +              E+   +     + +IE+E     ++  G+I+   
Sbjct: 480 LKDELIAIRDKYGDE--------RVTEIQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLP 531

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-- 584
                  +     ++A+  KE D +     A T D IL  +  G+ +      +      
Sbjct: 532 ASTYKTQRRGGKGITAMATKEEDYVDTVFTASTHDFILFFTNKGRVHRKKGYQIPEAGRM 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  +  ++ +   + +        +     L +V+  G    ++ S I    + G   
Sbjct: 592 AKGTNLVNILPVESGEKVTAMIHLREFPEDRYLAMVTRNGTVKRIQLSAINTARKAGIRC 651

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + +   +++  V +  GD  + +   +   + F    +  M R   GVR    ++G    
Sbjct: 652 ITLDEGDELIAVRETDGDQAILIATHDGMSICFKETDVRCMGRDACGVRGIKLREGDYV- 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL----GKRGGVGSLVPKGFPRSGKFLS 752
           +   +   G   +      Y +  +            RGG G        ++G  + 
Sbjct: 711 IGAARAKAGHQVLMVTENGYGKRTDMDEYIRSDGPQNRGGYGLKGYNVTEKTGPVVG 767



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 18/223 (8%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKI 553
            E      A +      ++    +++  G ++ ++      +    +  +   EGD L  
Sbjct: 603 VESGEKVTAMIHLREFPEDRYLAMVTRNGTVKRIQLSAINTARKAGIRCITLDEGDELIA 662

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    IL+ + DG +      ++         ++  I L     ++ A    +  +
Sbjct: 663 VRETDGDQAILIATHDGMSICFKETDVRCMGRDACGVRG-IKLREGDYVIGAARAKAGHQ 721

Query: 614 LLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVG 665
           +L+V+  G     +  E I +     R G      +  EK   VV V      D + V+ 
Sbjct: 722 VLMVTENGYGKRTDMDEYIRSDGPQNRGGYGLKGYNVTEKTGPVVGVKVVSDADDILVIN 781

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +   ++  ++  I    R   GV+L +  +G    VI F   +
Sbjct: 782 DAGVIIRMAVSGISTYGRAAQGVKLMNLDEGV--KVISFARTD 822


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A +ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +        KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   S+++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/752 (37%), Positives = 447/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDMTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P+  +E LL ++ GPDFPT   I+  R+ I + Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYESGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+L+D+RDES  +
Sbjct: 242 SVRMRAVWRKED-----GSVVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGLREILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ 
Sbjct: 357 FRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++    +  EI+E  + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  +   EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GD-----DRRSPLHERGE-AKAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    
Sbjct: 531 AGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGASIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     +LL+ S  G  FI   ++++A  R GK  L +    ++   +++  D   +  +
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQS-----YKDGGISDVICFKIC-EGLTWIDSAGRS 718
               ++L+F +  +P +S+GKG ++ S        G    +    I  +    + +  R 
Sbjct: 651 TAAGRMLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMAIAPQSSVTLYAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 711 YSLRPEELQKYQASRGCKGTSLPRGLQRVDRI 742


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/759 (34%), Positives = 422/759 (55%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E++K V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   AA+K
Sbjct: 8   NEDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMTQ +E IL+ ++++ VDF   Y++   EP V PS+ PNLL NG++GIAVGMAT+IP 
Sbjct: 128 ARMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ EA + LID+P+  +E L+ ++ GPDFPTGGI +  ++ I+E+YR GRG  RVR
Sbjct: 188 HRLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGI-IYGKQGIIEAYRTGRGRIRVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+  +    IV+ E+PYQ  K+RL+E+IAEL   K I  + ++RDES  +   V+
Sbjct: 247 AKTHIEK-NKTKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +    ++++  +F  + MET F + +  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKKDAMSEIVLNHLFKSTAMETTFGIILLAIHNKE-PKIFTLLELLNLFLNHRKTVVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  +IDEI+++IR     K      ++RF L+E Q  A
Sbjct: 365 RRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMARFGLSEIQSQA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I++E   LL E E++ ++L S ++    I  E+ E++E FS   
Sbjct: 425 ILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEEKLNEIIKQELIEIREKFST-- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
               +R T  E     ++   + +I  EP  V +S+RG+++ +   S +      K    
Sbjct: 483 ----KRKTTIE--EDYESIDIEDLIPNEPTVVTMSHRGYVKRVPLRSYEKQNRGGKGKIS 536

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
               + D ++    ++T D IL ++  G+ Y L    +        G+A+  LI +  ++
Sbjct: 537 GNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIGKAVVNLIQIGADE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       ++    L+  +  G       SE       G   + +   +++     + 
Sbjct: 597 KIMATITTQDFNEDKSLMFFTKNGIVKRSNLSEFKNIRSVGIRAINLDDNDELVTARIID 656

Query: 658 GD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWID 713
            +   + V       + F ++ I E+ R  +GV    +K+          I  E    + 
Sbjct: 657 SNVKEIFVATYKGMCIRFPVEDIREIGRVARGVTGIRFKEDEDYVAGATTIGDEKEELLT 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +        L  RGG G +  K  P++G+ + 
Sbjct: 717 VSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTPKTGQLVG 755


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/851 (31%), Positives = 411/851 (48%), Gaps = 110/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     S     V  ++K +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++
Sbjct: 1   MTDQENSTPPGGVPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E G ++   ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 61  MNENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE R+ +VA  +L  +D+D VDF++ Y+  +SEPVV P+KFPNLL NG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +AA+A++ NP +++ +L++ + GPDFPTGGII+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R++  VEE+ +    ++V+EIPYQV KS +IEKIAE +  KRI  + D
Sbjct: 240 SAYESGRGSVVMRSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   PD+++  ++  S ++T F  NM  L+ G  P+ + L  I
Sbjct: 300 IRDESDRSGMRVVIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALN-GGKPEQLNLPDI 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           LK +++ R EV+ RR+ F ++    R  IL GL IA  NIDE+I +IR    P       
Sbjct: 359 LKAFISFREEVVQRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQL 418

Query: 418 --------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MERDWPARDVEPLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             + AE      +L S  +  + +  E+ E+KE F+             E+         
Sbjct: 479 SKIGAEISDFLDILRSRARIQDIVRGEMLEIKEEFATPRK--------TEIVDGGADFDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      S +  K+ D +     A+T   +
Sbjct: 531 EDLIQREDMVVTVSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L  G     G+A+  ++ L   + I +               ++
Sbjct: 591 LFFSSRGICYKMKVWRLPLGGPISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             + +G     + S+     R GK  +K+   + +  V   +  D V +     + + F 
Sbjct: 651 FSTVRGTVRRNKLSDFTQINRNGKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR     DG    VI  +I                           
Sbjct: 711 VGDVRVFAGRNSVGVRGIRLADG--DKVISMQILHHMDAEAEERTAFLKMSRALRGEADE 768

Query: 706 -----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                        +  +   Y +  +     +  RGG G     
Sbjct: 769 NAGSDETGAVDAGLSQERYAEMSAAEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMA 828

Query: 743 GFPRSGKFLSS 753
              R+G  +SS
Sbjct: 829 VTERNGGLVSS 839



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 79/296 (26%), Gaps = 74/296 (25%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           ++S        +       +    + RG +R  K             A+  ++GD +   
Sbjct: 630 QISSIMPLPEDEESWANLDVMFS-TVRGTVRRNKLSDFTQINRNGKIAMKLEDGDGIVNV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY------ 608
                 D ++L +  G+    P G++    G        I L     +++  +       
Sbjct: 689 ATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGRNSVGVRGIRLADGDKVISMQILHHMDAE 748

Query: 609 -------------------------------------------DSTCKLLVVSSKGNAFI 625
                                                       +   +L +S  G    
Sbjct: 749 AEERTAFLKMSRALRGEADENAGSDETGAVDAGLSQERYAEMSAAEQIILTLSENGYGKR 808

Query: 626 VEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
               E     R  KG T + V+     +     V   D + +V    +L+   +D I   
Sbjct: 809 TSSFEYRVTGRGGKGITAMAVTERNGGLVSSFPVEESDQIMLVTNGGQLIRCPVDGIRIA 868

Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            R                VI FK  +G   +   G S    E D+     + GG G
Sbjct: 869 GRAT------------QGVIVFKTADGENVVAVEGISEVDDEEDVDAV--EDGGEG 910


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/744 (36%), Positives = 446/744 (59%), Gaps = 21/744 (2%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR
Sbjct: 12  ERISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKASAKYKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+VIGK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  S AA RYTE+R+
Sbjct: 72  TVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPKSFAAMRYTESRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ +E++L  + +  VD++  ++    EP VFP++ PNLL NGT+GIAVGMAT IP HN+
Sbjct: 132 TKYSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNGTTGIAVGMATDIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A + L+DNP+ S+  L ++++GPD PT   I+  R+ +++ Y  GRG  R+RA W
Sbjct: 192 REVVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDELIKMYETGRGSVRMRAVW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             +E       IV+T +P+QV  ++++E+IA  + AK++P++ D+RDES  +   R+V+ 
Sbjct: 252 QKDEESGD---IVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRLVVV 308

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M+ +F  +++E  + +NMNV+ +   P V  L  IL EWL+ R     R
Sbjct: 309 PRSNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSLSKILGEWLSFRTVTTRR 368

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R  +R+  ++RR+ +L+GLLIA+LN+DE+I IIR ED PK  ++ RF LTE+Q + IL  
Sbjct: 369 RLQYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDPKAELMKRFGLTEDQTEYILET 428

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L +LEE +I+ E  +L  E++++ S+L S  +  N +  E+ +  E +      G 
Sbjct: 429 KLRQLARLEEMKIRGEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQY------GD 482

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R +   V    +A  +  ++  EPITVVIS++GWIRS K H +D + L +K GDS K A
Sbjct: 483 DRRSPIVVRAEAQALSETELMSVEPITVVISDKGWIRSAKGHDIDPTGLSYKAGDSFKFA 542

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +H  +   ++LL + G++Y +PA NL S RG GE +   I+           +     ++
Sbjct: 543 VHGKSNQNVILLDSTGRSYAIPAHNLPSARGQGEPLSGRINPPSGATFEGVLMGADDQRV 602

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLL 671
           L+ S  G  FI +  ++ +  + GK  L +    ++     +       +A V  + +LL
Sbjct: 603 LLASDAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRLL 662

Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRSEND 725
           +F + ++PE++RGKG ++ +      +        +   +   +  + S  R+      D
Sbjct: 663 VFPVTELPELARGKGNKIMNIPSARAAAREEFVVAVSVILPGQVLTLYSGKRTITLKLGD 722

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGK 749
           L  + G+RG  G+ +P+GF +  K
Sbjct: 723 LEHYKGERGRRGNKLPRGFQKVDK 746


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/752 (36%), Positives = 452/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S   KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLYERSE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/775 (31%), Positives = 401/775 (51%), Gaps = 48/775 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 126

Query: 135 RMTQVAELIL------------QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           R+++++  +             + +D D VDF   ++E + EP V P+++PNLL NGT+G
Sbjct: 127 RLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLVNGTTG 186

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRE 237
           IAVGMAT+IP HN++EI  A   +IDN      E  I++LLE + GPDFPTGG+I+  + 
Sbjct: 187 IAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVIL-GKA 245

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I E+YR GR   RVRA   +E +  G   IVVTE+PY V K+RLIE IA+L+  K+I  
Sbjct: 246 GIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDKKIDG 305

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + D+RDES+ +   V     R ++P++++  ++  + ++  F + M  L   + P+++ L
Sbjct: 306 ITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQ-PKILNL 364

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
             +L  +L H+++V+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR+       K
Sbjct: 365 KQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVNSAK 424

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ RF L++ Q  AI+++RLR+L  LE  +I+ E D+L     K+ ++L   K     
Sbjct: 425 ATLMERFGLSDAQAQAIVDMRLRALTGLERDKIQKEYDDLQILIGKLKAILGDEKILLGV 484

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           I  EI E+ + +        RRT+       +     + MI      V  +  G+I+   
Sbjct: 485 IKTEITEIADKYGD-----DRRTSIG---FDEFDISMEDMIPVTNTVVTFTKLGYIKRMN 536

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                        +  +   + D +   L   + D +L  +  G+ Y + A  +   S  
Sbjct: 537 EDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRVYRIKAYEIPESSRT 596

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G AI  ++ L  ++ I      +       L + ++ G     + +E     + G T 
Sbjct: 597 SRGIAIVNILQLQPDEKITAMIPIEDYHEDKYLFMATADGFVKKTKITEYDNIRKNGLTA 656

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
           + +  ++ +  V    GD  V +V +  + + FS  ++    R   GV   +       +
Sbjct: 657 ITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSETEVRSTGRATMGVIGMNLSAD--DE 714

Query: 700 VICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +I  + I +G + +  +     +           RGG G    K   ++G  + +
Sbjct: 715 IIGMQLISQGESLMTVSENGLGKCTLMTEFNTIHRGGKGVKCYKITEKTGNLIGA 769



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 16/207 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      A +      ++    + +  G+++  K    D      L+A+  ++ D+L   
Sbjct: 609 QPDEKITAMIPIEDYHEDKYLFMATADGFVKKTKITEYDNIRKNGLTAITLRDDDTLIEV 668

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTC 612
                 + +++++  G+A       +   R  G A   +I  +L+ + +I+   +     
Sbjct: 669 KLTDGDEDVIMVTKYGQAIRFSETEV---RSTGRATMGVIGMNLSADDEIIGMQLISQGE 725

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
            L+ VS  G       +E     R GK      +   +   +        D V ++    
Sbjct: 726 SLMTVSENGLGKCTLMTEFNTIHRGGKGVKCYKITEKTGNLIGAKAVEKDDEVMLINTAG 785

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            ++   +     +SR   GV+L   K+
Sbjct: 786 TIIRIEVAGTTLLSRITSGVKLIDLKE 812


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 NQIGELIRILNSATRLMEVIREELEVIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLSEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 90/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 626 LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKACIKAADKKKAPF 685

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 686 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 745

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L+  Q +++  + +   ++L  S +G       SE    
Sbjct: 746 FKESDVRAMGRTARGVRGM-RLSEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 804

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 805 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 864

Query: 690 QSYKDG 695
                 
Sbjct: 865 IKLASD 870


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 402/769 (52%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 62  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 122 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++PE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 182 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 241 MRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 300 RLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + + F 
Sbjct: 419 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 479 D-----DRRSQLV---PFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 531 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 591 PDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDE 650

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 651 LIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFREG--DELLSMNV 708

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 709 VRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 757



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  ++ +  G ++      
Sbjct: 567 KAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAVPYLILATKGGLVKKTALKD 626

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 627 YDSPRSGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATD-DALRPM 685

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 686 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 745

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G    
Sbjct: 746 KIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 803

Query: 700 VICFK 704
           V+   
Sbjct: 804 VVGIA 808



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A   P          G  
Sbjct: 682 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLG 741

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 742 IKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 801

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 802 DAVVGIAR 809


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/777 (31%), Positives = 412/777 (53%), Gaps = 36/777 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +N      +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ 
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+ ++AE +L  +++D VDF+  +++   EP V P++ PNLL NG 
Sbjct: 121 IDGDPPAAMRYTEARLKKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+ +  +A IDN EI I +L++YI GPDFPTGGI +     + 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGI-IYGYNGVK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+   GRG   +RA+  +E    G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +
Sbjct: 240 EACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V++   R  + ++++ +++  + ++T F +N   L  G  P +M L  +
Sbjct: 300 IRDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKG-RPMMMNLKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           + E++ HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR  + P+      
Sbjct: 359 IHEFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L++ Q  AIL++ LR L  LE  +IK E + L+   E +  +L+    +   I  
Sbjct: 419 MERFALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +      G  R +    S  D     +  I+ E I + IS+  +++      
Sbjct: 479 ELLEIKDKY------GDERRSIIVHSAED--MRMEDFIDDEEIVITISHNSYVKRTPLSE 530

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                         + +E D  +  + A   + +L  +  G+ + L A  +   S    G
Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590

Query: 588 EAIQLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            A+Q +I++  ++ I             Y     +++ + KG                G 
Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDG 695
             + ++  +++       G   + +   + + + F+   +  M R   GVR  +   +  
Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKD 710

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +I     E +T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 711 EVVGMISVNNPE-VTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVA 766



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 76/198 (38%), Gaps = 12/198 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ + +G I+     +        ++A++  EGD L  A     +  I++    G
Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSG 680

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +   +   ++V    V +    +LVVS KG     +  
Sbjct: 681 RAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISVNNPEVTVLVVSEKGYGKRTDIE 740

Query: 630 EIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    ++  +   ++  +  VT  + + ++ ++  ++   +  +  M R  
Sbjct: 741 DYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRAT 800

Query: 686 -GVRLQSYKDGGISDVIC 702
            GVRL + KD      I 
Sbjct: 801 QGVRLINLKDNDEIASIT 818


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/745 (35%), Positives = 438/745 (58%), Gaps = 23/745 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   + +
Sbjct: 1   MADEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T I
Sbjct: 121 TESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  +
Sbjct: 181 PPHNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
            RA +  E+       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 241 QRAVYEREDGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R 
Sbjct: 296 RLVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRM 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +
Sbjct: 356 VTVRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGISDRQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  ++  +P+TVV+S +GW+R+ K H VD+  L +K GD
Sbjct: 475 ----DRRSPLVERDD-AKALDETDLLSADPVTVVLSEKGWVRAAKGHEVDVEGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K +    +   +  + + G+ Y+LPA  L S RG GE +   +        + A +  
Sbjct: 530 KYKASAKGKSNQPVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGK 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAVVGE 666
                L+ +  G  F+V  ++++AN + GKT L V    ++     +     D +A+V  
Sbjct: 590 DKDAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYN 720
             +LL+F + ++PEM RGKG ++ S     +++ + F         +    + +  R   
Sbjct: 650 EGRLLVFPVSELPEMVRGKGNKMMSIPGARVAERVEFVQDVQVVGPDDALTLYAGKRHLT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFP 745
               DL  + G+RG  G+ +P+GF 
Sbjct: 710 LKAGDLEHYYGERGRRGAKLPRGFQ 734


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/771 (30%), Positives = 409/771 (53%), Gaps = 36/771 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+    +  +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M+E+G +
Sbjct: 4   NTENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGNN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+YD++VR+AQP+  RY L+ GQGNFG++DGD  A
Sbjct: 64  SNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMPA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R+ ++AE +L+ +D++ VDF   +++   EP V P++ PNLL NG SGIAVGM
Sbjct: 124 AMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+I  HN+ E+ +  +A IDN +I+IE+L++++  PDFPTGGI +   E + + +  GR
Sbjct: 184 ATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGI-IYGYEGVKQGFETGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR +  VE    G   +V+ E+PYQ+ K+ L +KIA+L   K I  + + RDES  
Sbjct: 243 GRVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R    ++++  ++  S+++T + +N   L  G  P+V+ L  +L E++  
Sbjct: 303 DGMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKG-RPRVLNLKDMLSEFVDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           R EV+ RR+ F ++  + +  IL+G LIA  ++DE+IA+IR     ++ K  +++RF L+
Sbjct: 362 RHEVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTRFELS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL LRL+ L  +E  +IK E D ++     +  +L+    ++  I  E+ +VK+
Sbjct: 422 EIQSKAILELRLQRLTGMERDKIKEEYDEVMKLIAYLKEILSDEGLRFKIIKDELEDVKK 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSH 536
            F              E+         + +I +E + + IS+ G+I+          K  
Sbjct: 482 RFGDERK--------TEIQYLASEMRMEDIIAEEDVVITISHLGYIKRTSAYDYRQQKRG 533

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
                    +E D ++    A T   +L  +  G+ Y L    +  G   G G AIQ LI
Sbjct: 534 GRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEIPEGEKSGKGRAIQNLI 593

Query: 595 DLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +L  +  I             + S+  +++ ++ G        +     + G   + ++ 
Sbjct: 594 NLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIKKTLLEDFSRPRQNGVNAITINE 653

Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ---SYKDGGISDVI 701
            +++       G+  + +  ++ + + F  + + +  RG  GVR     + KD  +  + 
Sbjct: 654 GDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVRDTGRGAIGVRGIEVDNDKDEVVGMIC 713

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             K  E  T +  + + + +  +     +  RGG G        ++G  ++
Sbjct: 714 VNKEDETRTVLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITEKTGSLIA 764



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 14/223 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHT 559
           D   L           V+ +  G I+        +     ++A+   EGD L  A   + 
Sbjct: 606 DIKDLGDKEFISSHYIVLCTANGIIKKTLLEDFSRPRQNGVNAITINEGDQLLEAKLTNG 665

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLV 616
             +I++    G+A   P   +         ++ +   N   ++V        D T  +LV
Sbjct: 666 NSQIMMAIKSGRAIRFPENTVRDTGRGAIGVRGIEVDNDKDEVVGMICVNKEDETRTVLV 725

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLI 672
           VS KG     +  E     R GK    ++  EK   +  ++ VT  D + +  ++   + 
Sbjct: 726 VSEKGFGKRTDIEEYRITNRGGKGVKTINITEKTGSLIAILDVTEKDDLMITCKSGITIR 785

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
            ++  I E  R   GVRL    D      +     +    +D 
Sbjct: 786 MAVADIREAGRATQGVRLIRLDDSDEIAAVARLDEQEEQRLDE 828


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIQDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/816 (31%), Positives = 411/816 (50%), Gaps = 89/816 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +  D+   +KKS
Sbjct: 7   DVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+NP+++I++L+EYI GPDFPT GI +  R+ I++ Y+ GRG  ++RA+
Sbjct: 187 LGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGI-INGRKGIIDGYKTGRGKLKIRAK 245

Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             VE     G   I+V E+PYQV K+RLIEKIAEL+  K+I  +  +RDES +D   ++ 
Sbjct: 246 ARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + M++ F +NM  L     P+++ L  +L  ++ HRREV+ R
Sbjct: 306 EVKRGEVGEVILNNLYAQTQMQSSFGINMVAL-DHGQPKLLNLKEMLHAFILHRREVVTR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R+ F ++    R  +L+GL I+  NI+ II +IR+   P     +  +            
Sbjct: 365 RTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAML 424

Query: 423 -------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                    +T+ Q  AIL++RL  L  LE  +I +E   L+  
Sbjct: 425 EASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEI 484

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +  +    I  E+ +V+  F+ +     RRT   E++ ++     + +I +
Sbjct: 485 ITALLFILENPHRLMEVITEELNDVRANFADA-----RRT---EITASETDLCMEDLITE 536

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D +   L A T D IL  ST 
Sbjct: 537 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTR 596

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           G+ Y L    L   S +  G  I  ++ L   + I        YD    + + ++ G   
Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYDDDKFVFMATANGTVK 656

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
               S        G   + ++ + ++   +   G+  + +  +  K++ F   +      
Sbjct: 657 KTALSAYSRPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVD 716

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR    K+G  +  +      G   +     
Sbjct: 717 EQGNPVLDENGVQEIKFKGVRPMGRTATGVRGIKLKEGEKAVSLIVPNATGH-ILTCTEN 775

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           R   G +  K   R+GK + +
Sbjct: 776 GYGKRTPLSDYASKSRATQGVISIKVSERNGKVVGA 811



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 35/230 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     + +    + +  G ++        +  +  L A++  + + L  A
Sbjct: 626 EQGERITAILPVRTYDDDKFVFMATANGTVKKTALSAYSRPRASGLIAINLNDDNELIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
           L  +  + I++ S  GK                                  R  G     
Sbjct: 686 LITNGENEIMIFSDAGKVVRFKEAEETLVVDEQGNPVLDENGVQEIKFKGVRPMGRTATG 745

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
           +  I L   +  V+  V ++T  +L  +  G       S+  + +R   G   +KVS   
Sbjct: 746 VRGIKLKEGEKAVSLIVPNATGHILTCTENGYGKRTPLSDYASKSRATQGVISIKVSERN 805

Query: 649 K--MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              +  V     D + ++     L+   +  +  + R  +GV L   +D 
Sbjct: 806 GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRNTQGVTLIRTRDD 855


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/777 (31%), Positives = 411/777 (52%), Gaps = 36/777 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +N      +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ 
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++G+  G  +KKSARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGN+G+
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTEAR+ + AE +L  +++D VDF+  +++   EP V P++ PNLL NG 
Sbjct: 121 IDGDPPAAMRYTEARLKKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+ +  +A IDN EI I +L++YI GPDFPTGGI +     + 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGI-IYGYNGVK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+   GRG   +RA+  +E    G  CI+VTEIPYQV K+ +I++ AEL+  K+I  + +
Sbjct: 240 EACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  +   V++   R  + ++++ +++  + ++T F +N   L  G  P +M L  +
Sbjct: 300 IRDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKG-RPMMMNLKDM 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           + E++ HR EV+ RR+ F +   ++R  IL+G LIA  ++DE+I +IR  + P+      
Sbjct: 359 IHEFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L++ Q  AIL++ LR L  LE  +IK E + L+   E +  +L+    +   I  
Sbjct: 419 MERFALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKD 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +      G  R +    S  D     +  I+ E I + IS+  +++      
Sbjct: 479 ELLEIKDKY------GDERRSIIVHSAED--MRMEDFIDDEEIVITISHNSYVKRTPLSE 530

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                         + +E D  +  + A   + +L  +  G+ + L A  +   S    G
Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590

Query: 588 EAIQLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            A+Q +I++  ++ I             Y     +++ + KG                G 
Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDG 695
             + ++  +++       G   + +   + + + F+   +  M R   GVR  +   +  
Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMGRTATGVRGITLAHEKD 710

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +I     E +T +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 711 EVVGMISVNNPE-VTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVA 766



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 76/198 (38%), Gaps = 12/198 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ + +G I+     +        ++A++  EGD L  A     +  I++    G
Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSG 680

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +   +   ++V    V +    +LVVS KG     +  
Sbjct: 681 RAIRFNESTVRPMGRTATGVRGITLAHEKDEVVGMISVNNPEVTVLVVSEKGYGKRTDIE 740

Query: 630 EIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    ++  +   ++  +  VT  + + ++ ++  ++   +  +  M R  
Sbjct: 741 DYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRAT 800

Query: 686 -GVRLQSYKDGGISDVIC 702
            GVRL + KD      I 
Sbjct: 801 QGVRLINLKDNDEIASIT 818


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/764 (32%), Positives = 405/764 (53%), Gaps = 32/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L +  +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G    
Sbjct: 2   SELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGD AAA 
Sbjct: 62  KPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAVGM T
Sbjct: 122 RYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  GRG 
Sbjct: 182 NIPTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGT 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +E++  G   IVVTE+PY V K+RLIE+I+EL   K+I  +  IRDES  + 
Sbjct: 241 VTVRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R     +++ +++  + ++T F  NM  +     P+ M L  IL  +LAH+R
Sbjct: 301 LRISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAI-DHGAPKTMSLKEILVAYLAHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           EV+ RR+ F +Q    R  IL+GL IA  +IDEII IIR+    ++ K  +++ ++L++ 
Sbjct: 360 EVIRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E++  F
Sbjct: 420 QAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEIIYNELLEIQTKF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                 G +R T  +V     +   + +IE+E + V ++N G+I+               
Sbjct: 480 ------GDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEFKAQNRGGR 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  ++  + D +   +   T D +L  +  GK Y +    +     +  G  +  L++ 
Sbjct: 533 GVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLNF 592

Query: 597 NHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             N+ I T         +S   L  V+  G        E       G   L +  ++++ 
Sbjct: 593 EGNEKIQTVINVRGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVL 652

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V    G  ++ +   N   + F+ + +  M R   GVR    ++G +  V+   + E  
Sbjct: 653 SVQITDGTQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDL--VVGSDVLEKD 710

Query: 710 -TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +        +  RGG G        ++G    
Sbjct: 711 HNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAG 754



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
              E       ++  G ++           +  L AL   + D +        T  I++ 
Sbjct: 607 EAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLKALTLHDDDEVLSVQITDGTQNIIIA 666

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G + +    ++         ++  I L     +V + V +    +L+++ KG     
Sbjct: 667 THNGYSVSFAENDVRVMGRSAAGVRG-IRLREGDLVVGSDVLEKDHNVLIITEKGYGKQT 725

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             SE     R GK     +  EK   +  +  V+G + + V      ++ F++D + +  
Sbjct: 726 PVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIMVTTTQGVMIRFNVDSVSQTG 785

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           R   GVRL    +G        K+       D +  + +++  D  
Sbjct: 786 RATLGVRLIRL-EGNAKVATLAKVEHEEVLEDVSRETSDKAPLDEQ 830



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D   L   + +     ++ ++ G+        +R +   +  +  +  +EGD +  + 
Sbjct: 646 HDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVMGRSAAGVRGIRLREGDLVVGSD 705

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                  +L+++  G     P          G+ I+       N  +    +      ++
Sbjct: 706 VLEKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIM 765

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           V +++G         +    R   G   +++    K+  + KV  + V 
Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVL 814


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  657 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIQDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/784 (31%), Positives = 410/784 (52%), Gaps = 44/784 (5%)

Query: 1   MGVDNISNSNTLVE-------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPV 53
           M  +N  N+    +       + +K V L+  +E  Y+ YA+S I  RA+PD+RDG KPV
Sbjct: 1   MADNNNINNEMPDDVFDKTTTDRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPV 60

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+++M E+        +K ARIVG+ +GK HPHGD S+Y +LV +AQP+  RY L+ 
Sbjct: 61  QRRILYSMIELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVD 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           G GNFG++DGD AAA RYTEAR+T+++  ++  +++D VDF   ++E + EP + PS++P
Sbjct: 121 GHGNFGSVDGDGAAAMRYTEARLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPT 228
           NLL NGT+GIAVGMAT+IP HN++E+  A + +IDN      E  IE++L+ I  PDFPT
Sbjct: 181 NLLVNGTTGIAVGMATNIPPHNLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPT 240

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           GGII+ +R    E+YR GRG   VRA   +E +  G   IVVTE+PY V K+ +I KIAE
Sbjct: 241 GGIILGTR-GAEEAYRTGRGKVIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAE 299

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           L+  K++  +  +RDES  +   V+      ++P++++  ++  + M+  F + M  L  
Sbjct: 300 LVKLKKLDGITALRDESDREGMRVVIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVN 359

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P+V+ +  +LK ++ H+ EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIR
Sbjct: 360 NE-PKVLSITEMLKHYIKHQEEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIR 418

Query: 409 NEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             +     K  ++ RF LT+ Q  AI+++RLR+L  LE  +++ E  +LL + E++ ++L
Sbjct: 419 GSETVALAKEQLMGRFGLTDVQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
              K     I  EI E+   +              ++ + D     + +I      + ++
Sbjct: 479 ADRKVLLGVIRTEISEIANKYGDDRK--------SQIGQDDSDIDTEDLIPNVNTVIAMT 530

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+                +  +   + D ++  L   T + ++  +  G+ Y L A
Sbjct: 531 SLGYIKRMSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKA 590

Query: 578 GNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEI 631
             +   S    G AI  L+ L   + I          D    L +V+ KG       ++ 
Sbjct: 591 YQIPEASRTSRGMAIVNLLQLAPGEKISAMIPVKGFEDEEKCLFMVTKKGTVKKTPITDF 650

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
               + G   + +  ++++  V  VT D  V +V +N   + F    +   SR   GVR 
Sbjct: 651 SNVRKTGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITSRSSIGVRG 710

Query: 690 QSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               D    +++  ++  +G + +  + + Y +           RGG G    K   ++G
Sbjct: 711 MMLDD--TDEIVGMQLNTQGDSLLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITEKTG 768

Query: 749 KFLS 752
             + 
Sbjct: 769 NVIG 772


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/768 (33%), Positives = 416/768 (54%), Gaps = 30/768 (3%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D         +  V ++ +   ++  Y+ YA+S I  RA+PD RDGFKPVHRR++ AM
Sbjct: 58  SDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFAM 117

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G+     +KKSAR+VG+V+GK HPHGD +VYD++VR+ Q F  RYPLI GQGNFG+I
Sbjct: 118 KEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGSI 177

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTE RM ++AE +L  +D++ V F   Y+    EP V P+K PNLL NG++
Sbjct: 178 DGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGST 237

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++  HN+ E+ +  L LI+NP+I+I +L+  I GPDFPTG  I+     I  
Sbjct: 238 GIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHIL-GTAGIKS 296

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++RA   ++E  +    I+VTE+PYQV K+R+IE IA+L+  K I  + D+
Sbjct: 297 AYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDL 356

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+   +R  +P +++  ++  + MET F +    L  G+ P+ + L  +L
Sbjct: 357 RDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGK-PKELNLKELL 415

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + +L +R E++ +R+ + ++  + R  IL GL IA  NIDE++A+I+   N D+ K  ++
Sbjct: 416 EIYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLM 475

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F+L E Q  AIL++RL+ L  LE  ++  EL+ L+    +++ ++ S + ++  I  E
Sbjct: 476 ENFALDEIQSKAILDMRLQRLTGLETKKVLEELEGLVKLIGELNKIIESDELKYEIIRNE 535

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------- 531
           + E+KE +  +     RRT   + +       ++ +I +E + V I+N G+I+       
Sbjct: 536 LLELKEKYGDA-----RRTKIMQAAS---EVREEDLIHEEEVVVTITNGGYIKRIPLKTY 587

Query: 532 -SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGE 588
                    +  +  KE D ++    + T + IL  +  G+ Y      +   S +  G+
Sbjct: 588 TMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRLYWEKVYEIPEGSRQSRGK 647

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           AI  L++L   + I        +D    LL+ + +G       SE     + G   + + 
Sbjct: 648 AIVNLLELKGGETINAMIPVKEFDKNHYLLMATREGTIKKTPLSEFKNPRKAGIIAVTLD 707

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++++  V+   G   V +V +  K + FS   +  M R  +GVR  +  DG   +V+  
Sbjct: 708 EDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPMGRTARGVRGMAL-DGPEDEVVSL 766

Query: 704 KICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            I +   T +      + +          +RGG G +      R+G  
Sbjct: 767 DIVDETTTLLTVTENGFGKRTEYSQYPAHRRGGKGVITIITNERNGPV 814



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 11/204 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A +     +K    ++ +  G I+              + A+   E D L   L  
Sbjct: 659 ETINAMIPVKEFDKNHYLLMATREGTIKKTPLSEFKNPRKAGIIAVTLDEDDELVRVLLT 718

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                +L++S  GKA      ++         ++ +       ++V+  + D T  LL V
Sbjct: 719 DGKKEVLIVSKKGKAIRFSEKDVRPMGRTARGVRGMALDGPEDEVVSLDIVDETTTLLTV 778

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGE-NRKLLIF 673
           +  G     E S+  A+ R GK  + + + E+   +  V  V  D   +    +  ++  
Sbjct: 779 TENGFGKRTEYSQYPAHRRGGKGVITIITNERNGPVSRVRSVADDDELIFTSADGIIIRI 838

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGG 696
               I    R  +GVR+ + K G 
Sbjct: 839 PAKDISIQGRNTQGVRIINLKSGD 862



 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 15/185 (8%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSH 536
            F      G    T  E     +  L     E     +++S +G         +R +   
Sbjct: 692 EFKNPRKAGIIAVTLDEDDELVRVLLTDGKKE----VLIVSKKGKAIRFSEKDVRPMGRT 747

Query: 537 SVDLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           +  +  +      D +        T  +L ++ +G           + R  G+ +  +I 
Sbjct: 748 ARGVRGMALDGPEDEVVSLDIVDETTTLLTVTENGFGKRTEYSQYPAHRRGGKGVITIIT 807

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
              N  +          +L+  S+ G    +   +I    R   G   + + S +K+  +
Sbjct: 808 NERNGPVSRVRSVADDDELIFTSADGIIIRIPAKDISIQGRNTQGVRIINLKSGDKVAGI 867

Query: 654 VKVTG 658
            ++  
Sbjct: 868 ARIQN 872


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/769 (31%), Positives = 401/769 (52%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 19  RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 79  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  ++  +L+ +DE+ VDF+D Y+  + EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 139 LMTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   +++P+ S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 199 LREVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+     C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 258 MRAVVEVEEIHN-RQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 317 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLMDLLQIDEIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  + E F 
Sbjct: 436 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPERQRAIVSEELAALVEKFG 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 496 D-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKG 547

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y + A  L        G+ +  L+   
Sbjct: 548 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQ 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 608 PDEQIAQILAIRDYEAAPYLVLATKAGLVKKTALKDYDSPRSGGVIAINLRETEDGSDDE 667

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V + D + ++ +  + + F+     +  M R   GV+  S++     +++   +
Sbjct: 668 LIGAELVSSEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFRAD--DELLSMNV 725

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 726 VRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 774



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 78/245 (31%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  V+ +  G ++      
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYEAAPYLVLATKAGLVKKTALKD 643

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A    + D +LL+S   ++    A +  + R  
Sbjct: 644 YDSPRSGGVIAINLRETEDGSDDELIGAELVSSEDDLLLISKKAQSIRFTATD-DALRPM 702

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +    + ++++  V      +   +  G A      E     R G   K  
Sbjct: 703 GRATSGVKGMSFRADDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAA 762

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +  +  ++   ++++ E  R   GV+L +   G    
Sbjct: 763 KIVEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 820

Query: 700 VICFK 704
           V+   
Sbjct: 821 VVGIA 825


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/763 (31%), Positives = 402/763 (52%), Gaps = 33/763 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L+E+ +  V +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ + E GL     
Sbjct: 19  LIEQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKP 78

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD++VRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 79  YRKCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRY 138

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM++++  +L  ++++ VDF   Y++   EP V PS+FPNLL NG++GIAVGMAT+I
Sbjct: 139 TESRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNI 198

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A   LIDNP+  +++++++I GPDFPTGG+I+  R  I  +Y  GR    
Sbjct: 199 PPHNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIM-GRAGIRAAYATGRARLT 257

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +EE+  G   IVVTEIPY V K+RLIE IA+L+  KRI  + D+RDES  D   
Sbjct: 258 LRARTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++  S ++    + M  L  G VP+VMPL  +L  ++  + E+
Sbjct: 318 IVIELKRDANAQVVLNRLYSYSQLQDTVGVIMLALV-GGVPKVMPLKDVLTHYIDFQGEI 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ + ++    R  IL+GL +   N DE+I+IIR+       K  +++RF +T+ Q 
Sbjct: 377 VTRRTKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIARFGITDIQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ ++L  L  LE  +I+ EL  +L   ++ +++L    +  + +  E+  ++  ++ 
Sbjct: 437 TAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYAD 496

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDL 540
                 RRT   E+         + +I  E   + +++ G+         R+ +     +
Sbjct: 497 E-----RRT---EIVAVSGEVDIEDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGGRGV 548

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S +  +E D ++      T D I+  ++ G+ + L    +   S    G  I  L+ ++ 
Sbjct: 549 SGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLSMDS 608

Query: 599 NQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ +                 L++V+ KG              R G   + +   +++  
Sbjct: 609 DEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMGLIAIGLDDGDELAW 668

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           V +  G   + +  +N   + F       +SR  +GV+  + +DG  +  +   +   G 
Sbjct: 669 VRQTDGTSELIIATKNGMAIRFDEQDARPLSRTARGVKAITLEDGDEVVGMARVRKESGA 728

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +     R        L  RGG G        ++G    
Sbjct: 729 TLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYV-DKNGPVAG 770



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 13/195 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
                   ++   V+++ +G I+     +        L A+   +GD L        T  
Sbjct: 618 VTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMGLIAIGLDDGDELAWVRQTDGTSE 677

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSK 620
           +++ + +G A      +          ++  I L    ++V       +S   LL VS  
Sbjct: 678 LIIATKNGMAIRFDEQDARPLSRTARGVKA-ITLEDGDEVVGMARVRKESGATLLTVSES 736

Query: 621 GNAFIVEESEIIANTRKGKTFLK--VSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ 677
           G     E S+    +R GK      V     +  V      D V ++ ++  ++   + +
Sbjct: 737 GLGRRTEVSQYRLQSRGGKGIRNYYVDKNGPVAGVRMVDEDDDVIIITDDGVIIRIPVRE 796

Query: 678 IPEMSR-GKGVRLQS 691
           I   SR G GVR   
Sbjct: 797 ITVQSRYGGGVRAMR 811


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 406/762 (53%), Gaps = 35/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFKK 74
            +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++ MS E+ L      +K
Sbjct: 14  RIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VRLAQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 74  SARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + ++  +D++ VD+   +++   EP V P+K P L+ NG SGIAVGMAT++  H
Sbjct: 134 RMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  A IDNPEI+ E++L+YI GPDFPTGGI +   E + E+   GRG   +RA
Sbjct: 194 NLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGI-IYGYEGVREAMLTGRGRVMMRA 252

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G  CIV+TEIPY + K+ +I+KIA++I  K+I  +  I DES  +   ++ 
Sbjct: 253 KTDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIII 312

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                    +++ ++F  + ++T F +N   L  G  PQ++P+  ++K ++ HR +V+ R
Sbjct: 313 ILKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNG-RPQMLPMRDLVKHFVDHRHDVVVR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GLLIA  NIDEI+ IIR+    D  K  M+ RF+L++ Q  AI
Sbjct: 372 RARFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIERFNLSDIQASAI 431

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR+L  LE  ++ +E D L  +   +  +L +   Q   I  E+ E+KE +     
Sbjct: 432 IEMRLRALTGLEYGKLIAERDELTKQIAYLKEVLENVGMQMQIIKDELLEIKEKYGDE-- 489

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E+  + +    +     + + + IS+ G+I+              V     
Sbjct: 490 ---RRS---EIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPLAEYRTQNRGGVGAKGS 543

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D ++    A   + +L  +  G+ + L    +  G     G AIQ +I +  +  
Sbjct: 544 ATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSSKGRAIQNVIQIEPDDK 603

Query: 602 IVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ +  G     +        + G   + +   +++   
Sbjct: 604 VRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEA 663

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLT 710
              +G   V +   + K + F+   +  + R G GVR  S ++   +  +IC +      
Sbjct: 664 KLTSGQAEVMIAARDGKAIRFNESTVRPIGRVGAGVRGISIEESDEVVGMICVEPDSKQD 723

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +  +     +  RGG G        ++GK +S
Sbjct: 724 VLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTEKTGKLIS 765



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 14/212 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI 563
           L           ++ +  G I+  K  +        ++A+  +EGD L  A        +
Sbjct: 613 LNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGQAEV 672

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKG 621
           ++ + DGKA       +      G  ++  I +  + ++V     +   K  +LV+S  G
Sbjct: 673 MIAARDGKAIRFNESTVRPIGRVGAGVRG-ISIEESDEVVGMICVEPDSKQDVLVLSENG 731

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                +  E     R GK    ++  EK   +  +  VT D  + ++  +   +  ++ Q
Sbjct: 732 YGKRTDLDEYRITNRGGKGVKTINVTEKTGKLISIQAVTDDNDLMIINRSGLTIRTAVSQ 791

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           I    R   GVR+ + ++G     +      G
Sbjct: 792 IRLAGRATQGVRIINLREGDAIASVMAVPAAG 823


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/851 (31%), Positives = 404/851 (47%), Gaps = 114/851 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D   +S++  +  +K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M 
Sbjct: 5   KDPADDSSSPAD--IKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMY 62

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 63  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 122

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+ ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 123 GDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGAGG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  ++ I  +
Sbjct: 183 IAVGMATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIIL-GKQGIRSA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y LGRG   +R +  +E + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 242 YHLGRGSIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDLR 301

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   PD+++  ++  + ++T F  NM  L  G  PQVM L  +L 
Sbjct: 302 DESDRDGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVAL-DGGRPQVMNLKDLLT 360

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            ++A R  V+ RR+ F +     R  IL GL IA  NIDEII +IR    P         
Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMS 420

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 421 RDWPAKDVETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDK 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+  VK  F+       RRT   +    +     + 
Sbjct: 481 LAVEIADYLDILRSRARVQGIVRDELTAVKNEFATP-----RRTVIVD---QEGEVEDED 532

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          K      S +  ++ D +     A T   +L 
Sbjct: 533 LIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLF 592

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L        G+A+  ++ +   + I T               ++  
Sbjct: 593 FSSRGQVYKEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFA 652

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V +    D V +     + + F + 
Sbjct: 653 TTGGNVRRNKLSDFVDVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVT 712

Query: 677 QIPE-MSRGK-GVRLQSYKDGGISDVICFKI----------------------------- 705
            +     R   GVR  +  DG    +I   I                             
Sbjct: 713 DVRVFQGRTSMGVRGINLGDG--DKLISLTILRHMDVNADERAAYLRRANAVRRGGVEDE 770

Query: 706 ----CEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                E  T                    +  +   Y +  +        RGG G +   
Sbjct: 771 AGTDSEEATGAIELGEQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMS 830

Query: 743 GFPRSGKFLSS 753
              R+GK ++S
Sbjct: 831 VNGRNGKLVAS 841



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 29/236 (12%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--IRS--------LKSHSVDLSALH 544
           RR+    +   +  ++    I KE   V+++  G   IR             S+ +  ++
Sbjct: 670 RRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGRTSMGVRGIN 729

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLIDLN 597
             +GD L       T  R + ++ D +A  L   N +   G         E     I+L 
Sbjct: 730 LGDGDKLISL----TILRHMDVNADERAAYLRRANAVRRGGVEDEAGTDSEEATGAIELG 785

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVV 654
             + +    +  +   +L +S  G        E     R GK  + +S      K+    
Sbjct: 786 EQRYVE---MSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRNGKLVASF 842

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            V   D + +V +  +L+   ++ I    R  +GV + +  D      +     EG
Sbjct: 843 PVEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVEHLTDEG 898


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIQDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/745 (35%), Positives = 444/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W
Sbjct: 183 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 KKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + R
Sbjct: 298 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +   G 
Sbjct: 418 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADAQAYGD 471

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 472 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + + G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +  +P++S+GKG ++ +         + G++ +        LT I    R       +
Sbjct: 652 FPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L    G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVTGERGRRGT-LMRGLQRIDRV 734


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/751 (31%), Positives = 396/751 (52%), Gaps = 30/751 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     +KKSARIVG+
Sbjct: 1   MSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG++DGD AAA RYTEARM+++A 
Sbjct: 61  VMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIAL 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++D VDF+  Y+E + EPVV PS+FPNLL NG +GIAVGM T+IP HN++E+  
Sbjct: 121 EMLRDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVIS 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
               L++NP+ +  +L+E I GPDFPTG I++  +  I ++Y  G G   +RA+  +EE 
Sbjct: 181 GLHLLMENPDATTAELMEAIPGPDFPTGAIVM-GKSGIRKAYETGHGTVTLRAKVDIEEQ 239

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   I+V EIPY V K+ LI +IA+L   K+I  + DI DES  +   +     R + 
Sbjct: 240 SNGKSRIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVS 299

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++ +++ L+ M++ F  NM  +  G  PQV+ L  IL+ +L H+ +V+ RR++F ++
Sbjct: 300 PSVVLNNLYKLTLMQSSFTFNMLAIVDG-TPQVLGLKQILQYYLKHQEDVIRRRTAFDLK 358

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GL IA  +ID II+IIRN       K  +++ + L++ Q  AIL++RL  
Sbjct: 359 KAQARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAILDMRLVR 418

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  ++ +E    L        +L   ++  + I  E+ E++E F        RRT 
Sbjct: 419 LTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSIIYQELLEIQEKFGD-----DRRTE 473

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
                    +   + +IE+E + + +++ G+I+          +     +  +   + D 
Sbjct: 474 LMVGEV--LSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGGRGVQGMGVHDDDF 531

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           ++  +   T D +L  +  GK Y +    +        G  +  L+DL+  + I T    
Sbjct: 532 IEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLDLSEGEKIQTVINV 591

Query: 609 DSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           D   +     L   + +G       +E     + G   + +   +++  V    G+   +
Sbjct: 592 DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDELLNVSITDGNQNII 651

Query: 664 VGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +G +    + FS + + +M R   GVR    +D   + V    +         + + Y +
Sbjct: 652 IGTHGGYAVSFSENAVRQMGRTASGVRGIRLRDDDYA-VGSDVLKPDSNVFVISEKGYGK 710

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +  RGG G        ++G    
Sbjct: 711 QTPASDYPIKGRGGKGIKTSNITEKNGSLAG 741



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 11/189 (5%)

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           ++  G IR        L A+  +EGD L           I++ +  G A +     +   
Sbjct: 616 VTEFGNIRKN-----GLKAITLREGDELLNVSITDGNQNIIIGTHGGYAVSFSENAVRQM 670

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-- 641
                 ++  I L  +   V + V      + V+S KG       S+     R GK    
Sbjct: 671 GRTASGVRG-IRLRDDDYAVGSDVLKPDSNVFVISEKGYGKQTPASDYPIKGRGGKGIKT 729

Query: 642 --LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             +   +     L +    + + V+ +   ++ F++  +    R   GV L +  D    
Sbjct: 730 SNITEKNGSLAGLTIVDGTEDIMVITDKGVMIRFNVKSVSTTGRSTMGVHLINLDDDAKV 789

Query: 699 DVICFKICE 707
             I     E
Sbjct: 790 STIAKVEPE 798



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            ++ ++ G+        +R +   +  +  +  ++ D    +        + ++S  G  
Sbjct: 650 IIIGTHGGYAVSFSENAVRQMGRTASGVRGIRLRDDDYAVGSDVLKPDSNVFVISEKGYG 709

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              PA +       G+ I+       N  +    + D T  ++V++ KG         + 
Sbjct: 710 KQTPASDYPIKGRGGKGIKTSNITEKNGSLAGLTIVDGTEDIMVITDKGVMIRFNVKSVS 769

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
              R   G   + +  + K+  + KV  + 
Sbjct: 770 TTGRSTMGVHLINLDDDAKVSTIAKVEPEQ 799


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 417/833 (50%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           A+  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 AQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  SV L AL   EGD L  A
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILISA 725

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 726 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 784

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 785 LTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 844

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 845 VRTRVGEVSSLGRNTQGVTLIKLASD 870


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 417/833 (50%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           A+  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 AQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  SV L AL   EGD L  A
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILISA 725

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 726 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 784

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 785 LTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 844

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 845 VRTRVGEVSSLGRNTQGVTLIKLASD 870


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 417/833 (50%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           A+  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 AQIGELIRILNSATRLMEVIREELELIRAEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 GELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R + +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  SV L AL   EGD L  A
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILISA 725

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 726 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 784

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 785 LTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 844

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 845 VRTRVGEVSSLGRNTQGVTLIKLASD 870


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 451/752 (59%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S+++LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+      
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQ------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R +        KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 471 ADAQAYGDERRSPLHERGEAKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     I    +  
Sbjct: 530 SYKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPVTGKLTLPPGATIDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +    ++   LV++   D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIRSETDMLLAITHA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAHLYVMPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/771 (32%), Positives = 411/771 (53%), Gaps = 32/771 (4%)

Query: 2   GVDNISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
             D   +     + N V A+ +   ++  Y+ YA+S I  RA+PD RDG KPVHRRI+ +
Sbjct: 57  ASDETEDEGPEPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFS 116

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G+     +KKSAR+VG+V+GK HPHGD +VYDS+VR+ Q F  RYPLI GQGNFG+
Sbjct: 117 MKESGITHDKPYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGS 176

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTE RM ++AE +L  ++++ V FR  Y+    EP V P+K PNLL NG+
Sbjct: 177 IDGDEAAAMRYTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGS 236

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++  HN+ E+ +  L LIDNPE  + +L+  + GPDFPTG  I+     I 
Sbjct: 237 TGIAVGMATNMAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHIL-GTAGIR 295

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  ++RA   ++E+ +    I+VTE+PYQV K+R+IE IA+L+  K I  + D
Sbjct: 296 SAYTTGRGPVKIRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISD 355

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+   ++  +  +++  ++  + MET F +    L  G+  + + L  +
Sbjct: 356 LRDESDREGIRVVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQE-LNLKQL 414

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           L+ +L +R E++ +R+ + ++  + R  IL+GL IA  NID ++A+I+   N D+ +  +
Sbjct: 415 LEIYLEYRMEIVQKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGL 474

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F+L E Q  AIL++RL+ L  LE  +I  EL+NL+    ++  +L S + ++  I  
Sbjct: 475 MDNFTLDEVQAKAILDMRLQRLTGLETKKILEELENLIKLIAELKKILESDELKYEIIRT 534

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           E+  +KE +        RRT     +        + +I +  + V I+N G+I+      
Sbjct: 535 ELLGLKEKYGD-----VRRTKIVHYTE---EVTDEDLIPEADVVVTITNSGYIKRIPLDT 586

Query: 532 --SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +     +  +  KE D ++    + T + IL  +  G+ Y      +   S +  G
Sbjct: 587 YSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSRG 646

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +AI  L++L   + +        +     LL+ +  G       SE     + G   + +
Sbjct: 647 KAIVNLLELREGEMVNAMIPVKEFAEDRYLLMATRAGTTKKTPLSEFRNPRKAGIIAVSL 706

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V+   G   V +V +  K + FS D +  M R  +GVR     DG   +V+ 
Sbjct: 707 DEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPMGRTARGVRGMIL-DGPEDEVVS 765

Query: 703 FK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + E  T +      + +        + +RGG G +      R+G F++
Sbjct: 766 MDLVDETTTLLSVTENGFGKRTEYSQYPMHRRGGKGVITIVTNLRNG-FVA 815


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/769 (30%), Positives = 402/769 (52%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 22  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 82  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 141

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF+D Y+  + EP V P++ PNLL NG++GIAVGMAT+IP HN
Sbjct: 142 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHN 201

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   ++NPE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 202 LREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 260

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+P+Q     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 261 MRAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 319

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D+++ F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 320 RLVVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   I+E+IA+IR  +     +  ++    + E Q
Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S ++Q   ++ E+  + + F 
Sbjct: 439 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFG 498

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V IS  G+++          K     
Sbjct: 499 D-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     +E D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 611 PDEQIAQILAIRDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDE 670

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 671 LIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSGVKGMSFREG--DELLSMNV 728

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 729 VRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 777



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 27/245 (11%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R          +        L     E  P  V+ +  G ++      
Sbjct: 587 KAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYEAAPYLVLATKGGLVKKTSLKD 646

Query: 538 VD------LSALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
            D      + A++ +E      D L  A      D +LL+S   ++    A +  + R  
Sbjct: 647 YDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISKKAQSIRFTATD-DALRPM 705

Query: 587 GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTF 641
           G A   +  +      ++++  V      +   +  G A      E     R G   K  
Sbjct: 706 GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAA 765

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G    
Sbjct: 766 KIVEDRGSLVGALVVEEADEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GKRDA 823

Query: 700 VICFK 704
           V+   
Sbjct: 824 VVGIA 828



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 702 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGLG 761

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V +   ++L ++  G       +E+    R   G   + +   
Sbjct: 762 IKAAKIVEDRGSLVGALVVEEADEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 821

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 822 DAVVGIAR 829


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/779 (30%), Positives = 397/779 (50%), Gaps = 42/779 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D ++       + ++ + +   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+ 
Sbjct: 1   MSDDTLTGDG---FDRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     ++ KSA+ VGE +  LHPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+
Sbjct: 58  MYDSGYRPERSYVKSAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTE +MT +A  +++ + E+ V+F   Y+ +  EP + PS+ PNLL NG+
Sbjct: 118 PGNDGPAAMRYTECKMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGS 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ EA   ++DN       +++ ++E + GPDFPT G+IV   
Sbjct: 178 GGIAVGMATNIPPHNLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIV-GD 236

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG  R+R    +EE+G     IV+TE+PYQV     I  IA+ I   ++P
Sbjct: 237 TGIKDAYTTGRGSIRMRGVTEIEEIGS-RQVIVITELPYQVNPDNFIANIADHIANGKLP 295

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
               I DE S      ++    R   P +++ +++  S +ET F  NM  +  G VP+ +
Sbjct: 296 GASRIDDESSDRVGMRIVVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDG-VPRTL 354

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+
Sbjct: 355 RLDQMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDE 414

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q + IL+++LR L  LE  +I  +L  +  +   +  +L S ++Q 
Sbjct: 415 ARTGLIELLDVDEIQANEILSMQLRRLAALERQKIVDDLAEIERQIADLKDILASPERQR 474

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ E +        RRT       A     ++ +I +E + V I++ G+   
Sbjct: 475 AIVGDELAEIVERYGD-----DRRTRLI---AATGDVSEEDLIARENVVVTITSTGYAKR 526

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                 ++ K     +     K+ D +K      T D IL  +  G+ Y L A  L    
Sbjct: 527 TKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAG 586

Query: 584 -RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ + +G       ++  +    G 
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQIHSYEDAPYLVLATREGRVKKSRLTDYESARSAGL 646

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYK-D 694
             + ++  +++      +  D V +V E  + + F+ D   +  M R   GV+   ++ D
Sbjct: 647 IAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRFRGD 706

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +      + L    S G  Y +           RGG+G +  K  P+ GK + +
Sbjct: 707 DQLLAMTVVHDNDFLLVATSGG--YGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGA 763



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 18/236 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ +  G ++  +      + S  L A++  EGD L  A
Sbjct: 601 QPEERIAQVIQIHSYEDAPYLVLATREGRVKKSRLTDYESARSAGLIAINLNEGDQLIGA 660

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
             A   D +LL+S  G+A    A +    R  G A   +  +    +  ++   V     
Sbjct: 661 ALASDEDDVLLVSEQGQAIRFTADD-EQLRPMGRATAGVKGMRFRGDDQLLAMTVVHDND 719

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + V   D +  +    
Sbjct: 720 FLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGALAVEEEDQIFAITSAG 779

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI----CEGLTWIDSAGRSY 719
            ++   + QI   SR   GVRL    +      I   +     E  T +    ++ 
Sbjct: 780 GVIRTEVAQIRPSSRATMGVRLVDLGEDVELLAIDKNVEDEGEEEATAVAKGEKTL 835


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/740 (49%), Positives = 525/740 (70%), Gaps = 5/740 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ +    AL ERYLAYALSTI  R++PD+RDG KPVHRR+++AM ++ L+  + 
Sbjct: 1   MKEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPLI GQGNFG+IDGD+AAA RY
Sbjct: 61  YKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RMT++  L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+I
Sbjct: 121 TESRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A L LIDNP+  I  ++ +I GPDFPTGGII++  E I  +Y  GRG FR
Sbjct: 181 PPHNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+RW  EE+  G++ IVVTEIPYQ+QKS+LIE+IA L+  K+IPL+  IRDES + +R+
Sbjct: 241 VRSRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRV 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++RS DP ++MES+F L+++E+R  LNMNV+    VP+VM +  IL+E+L HR+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNI 360

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RRS++ +  I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++  QV+ I
Sbjct: 361 IIRRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTIIMERFKISAIQVEVI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN RLRSL+KLEE+ I  E  NL  ++  ++ +L + K+ W  +  EI+ V+  F  +T 
Sbjct: 421 LNTRLRSLQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWQIVKKEIKAVQTKFGLNTI 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
           +G RRT+F EV   ++     A I KEPIT++ S  GW+RSLK H+ DLS + +KEGD+ 
Sbjct: 481 IGARRTSFEEVDLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDTE 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH-GEAIQLLIDLNHNQDIVTAFVYDS 610
           K  + A+TTD+IL++S+ G+ +TL A N+  G+G  G +I+LL+D+ +N DI    VY  
Sbjct: 541 KFIIEAYTTDKILIISSKGRFFTLLADNISKGKGTGGVSIKLLVDIGNN-DITNILVYKP 599

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
              LL+ SS G  F+V  +E+IA T+ GK  + +         + V GD +A +GE+R+L
Sbjct: 600 NQLLLLASSIGKGFLVNSNEVIAQTKTGKQIMNIPEGYSCIACLPVNGDSIACIGESRRL 659

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           L+F+ID+IPEM +G+GV LQ +K+  + D+  F   +GL+W D         E +++ +L
Sbjct: 660 LVFNIDEIPEMKKGQGVVLQRFKNAKLLDIKIFNKQDGLSWNDGTKIQL---EKNIVAFL 716

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           GKRGG G+  P GFP++ +F
Sbjct: 717 GKRGGFGTFPPIGFPKNNRF 736


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 412/762 (54%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y SLV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++D VDF   ++E + EP V P+++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N+ E+  A + +I+N     E    ++L+ + GPDFPTG  I+   + I ++Y  GRG  
Sbjct: 187 NLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHIL-GIKGIRDAYTTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K++  + D+RDES  +  
Sbjct: 246 KVRAVSEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R ++ ++++  ++  + ++  F +NM  L   + P+V+ +  +L+ +LAH+ +
Sbjct: 306 RVVIELRRDVNANVILNRLYKHTQLQETFGVNMLALVNNQ-PKVLNILQMLEYYLAHQED 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GLLIA  NIDEII IIR     +  K  ++ RF L++ Q
Sbjct: 365 VVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  ++++E + LL++ E  +S+L   K+    I  EI  V+  + 
Sbjct: 425 AQAIVDMRLRALTGLERERLEAEYNELLSKIEYFESILADNKKLLGVIKEEILIVEGKYK 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT F +    D     + +I+KE I + ++  G+I+                
Sbjct: 485 D-----DRRTGFIQ----DDEMEDEDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  + + T   I   +  G+ YT+    +   S    G AI  L+ L 
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQ 595

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I      ++      L +V+ KG       +      + G   + ++ ++++  V 
Sbjct: 596 PDEKISAIIPSEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLAAINLTEDDELIEVK 655

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
              G D + +V +    +  +   I  M RG  GVR     +    +VI  ++  +G   
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNEA--DEVIGMQLASQGEYL 713

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +        +  RGG G +  K   ++GK + +
Sbjct: 714 LLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNDKTGKLVGA 755



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      A +       E    +++ +G I+  + +  D      L+A++  E D L   
Sbjct: 595 QPDEKISAIIPSEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLAAINLTEDDELIEV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              H  D ++++S  G    +   ++ +       ++ +  LN   +++   +      L
Sbjct: 655 KVTHGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGM-RLNEADEVIGMQLASQGEYL 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKL 670
           L+VS  G     + SE     R GK  +     +K   +     V  D  + ++     +
Sbjct: 714 LLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNDKTGKLVGAKLVNEDREILLITTEGII 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           +   +  I  + R   GV+L +      + +    
Sbjct: 774 IRIEVSGISVLGRAATGVKLMNIDRESDTKIASIA 808


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 446/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDA-ELSLEGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 60  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  +++  V+++  ++    EP + P++ P++L NG +GIA
Sbjct: 120 SFAAMRYTEARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A + L++ P+ +I  LLE++ GPD+PT   I+  R  I + Y 
Sbjct: 180 VGMATDIPPHNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + +E+       IV+T +P+Q   +++IE+IA  + AK++P++ D+RDE
Sbjct: 240 SGKGSIKARAVYHMEDGD-----IVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM+ +F  +D+E  + +N+N+L M   PQV  L  IL 
Sbjct: 295 SDHENPTRLVIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILT 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA RRE + RR  FR+  +  R+ IL GLLIAYLNIDE+IAIIRNED+PK  ++ RF 
Sbjct: 355 EWLAFRRETVRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEPKKELMRRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL+L+LR L KLEE++I+ E D L  E++++++LL S ++  N +  EI+  
Sbjct: 415 LSEIQADAILDLKLRHLAKLEEFKIRGEQDELAKERDQLEALLGSARKLGNLLKKEIQAD 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E   A + T ++ +   E +TVV+S  GW+R+ K H VD+  
Sbjct: 475 AEKYGD-----DRRSPLVERQEAKQLTEKE-LTPSELVTVVVSEMGWVRAAKGHDVDVQG 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD   ++    +  + + ++  G+ Y+L A  L S RG GE +   +     +  
Sbjct: 529 LNYKAGDGYLVSAQGRSNQQTVFMTNLGRTYSLEAHTLPSARGQGEPLTGKLSFTAGEQT 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV- 661
               + +   + L+ S  G  F+ E +++I+  + GK  L +    ++            
Sbjct: 589 RYVLLGNEDERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDD 648

Query: 662 ---AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWI 712
               V+    ++L+F ++ +P++ +GKG +L       ++        +     +    +
Sbjct: 649 ALCLVISNEGRMLLFPLNTLPQLGKGKGNKLIGIPADKVASREEFVTHVAVVKADQAVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R       D++ + G+RG  G+ +P+G  R  + 
Sbjct: 709 YAGKRKLTLKPADMVLYHGERGRRGAKLPRGLQRVDRV 746


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/783 (31%), Positives = 397/783 (50%), Gaps = 60/783 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E   D+    +KSARIV
Sbjct: 20  ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G  HPHGD S+Y+++VR+AQ F  R PL+ GQGNFG++DGD AAA RYTE+R+ + 
Sbjct: 80  GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D++ V+F   Y+E   EP V P+++PNLL NG +GIAVGMAT+IP HN  E+
Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  A ++NPEI+ E+L E + GPDFPTG +I+  R  I E+YR GRG   +RAR  V+
Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIM-GRHGIREAYRTGRGSIIMRARAEVQ 258

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
              +    I+V EIPYQV K++L+E+I E++  K +  + DIRDES      ++    R 
Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRD 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++  ++  + ++T FP+NM  ++ GR  Q M L  +++ +   R++V+ +R++F 
Sbjct: 319 AAGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQ-MGLKDVIEAFCEFRKDVVIKRTTFL 377

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           +     R  IL GL++A  +IDEII +I+     +                         
Sbjct: 378 LNKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDD 437

Query: 420 --------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                    ++L+E Q  AIL LRL+ L  +E  ++ +E   L  +      +L S  + 
Sbjct: 438 PGHAVVDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRV 497

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+   +E  S       RRT   E++        + +I++E + V +S+RG+I+
Sbjct: 498 SQVILDELAATRERLSD-----DRRT---EITDQLADQDDEDLIQQEDMVVTVSHRGYIK 549

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     +      + +  ++ D +      +T   IL  ++ G  Y L    L   
Sbjct: 550 RVPLSIYRAQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPES 609

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANT 635
             +  G+A+  L+ +   + I T               ++  ++ GN      S+     
Sbjct: 610 APQSLGKAMVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIK 669

Query: 636 RKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQS 691
           R GK  +K+   +++  V+     D V +   N K + F+ + +    RG+   GVR   
Sbjct: 670 RNGKIAMKMQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVF-RGRDSTGVRGIK 728

Query: 692 -YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +  +      E    +      Y +           RGG G    +  PR+G+ 
Sbjct: 729 LLGKDRVVSMSIIADPENEYILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRNGQV 788

Query: 751 LSS 753
           ++S
Sbjct: 789 MAS 791



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV----- 538
              LG+       +   +       M + E        +  +  G +R            
Sbjct: 611 PQSLGKAMVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKR 670

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               A+  ++GD L   +  +  D +L+ + +GKA    A  +   RG        I L 
Sbjct: 671 NGKIAMKMQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLL 730

Query: 598 HNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMK 651
               +V+           +L V+  G        +   + R G+    +     + + M 
Sbjct: 731 GKDRVVSMSIIADPENEYILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRNGQVMA 790

Query: 652 LVVKVTGDHVAVVGENRKLLIFSI-----DQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               V  D + +V    +++   +     D I   SR   GVRL    D     V+ 
Sbjct: 791 SFTVVEEDQLMLVTNQGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVS 847


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVAGERGRRGT-LMRGLQRIDRV 737


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/746 (36%), Positives = 439/746 (58%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  ++  L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A +
Sbjct: 1   MADEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++   AE++L  + +  V++   ++    EP + P++ PN+L NGT+GIAVGM+T I
Sbjct: 121 TESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+ +P  S++ L++YI GPDFPT   ++     I+  Y  G+G  +
Sbjct: 181 PPHNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
            RA +  EE       IVVT +PYQV  ++++E+IA+ +  K++P++ D+RDES  +   
Sbjct: 241 QRAVYEREEGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  LD IL EWL  R 
Sbjct: 296 RLVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRM 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +
Sbjct: 356 VTVRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGVSDRQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E+E +++ L S  +    +A E+++  E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  ++  +PITVV+S +GW+R+ K H VD+  L +K GD
Sbjct: 475 ----DRRSPLVERED-AKALDESDLLSADPITVVLSEKGWVRAAKGHEVDVEGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K      +   +  + + G+ Y+LPA  L S RG GE +   +        + A +  
Sbjct: 530 KYKACAKGKSNQSVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGK 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGE 666
                L+ +  G  F+V  ++++AN + GKT L V    ++     +   T D +A+V  
Sbjct: 590 DKDAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-------DVICFKICEGLTWIDSAGRSY 719
             +LL+F + ++PEM RGKG ++ S     ++       DV      + LT + +  R  
Sbjct: 650 EGRLLVFPVSELPEMVRGKGNKMMSIPGARVADRVEFVQDVQVVGPNDALT-LYAGKRHL 708

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
               NDL  + G+RG  G+ +P+GF 
Sbjct: 709 TLKANDLEHYYGERGRRGAKLPRGFQ 734


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332280161|ref|ZP_08392574.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
 gi|332344976|gb|AEE58310.1| DNA topoisomerase IV, A subunit ParC [Escherichia coli UMNK88]
 gi|332752693|gb|EGJ83078.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-671]
 gi|332753078|gb|EGJ83462.1| DNA topoisomerase IV, A subunit [Shigella flexneri 4343-70]
 gi|332754396|gb|EGJ84762.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2747-71]
 gi|332765499|gb|EGJ95717.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2930-71]
 gi|332999773|gb|EGK19357.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-272]
 gi|333000251|gb|EGK19834.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-218]
 gi|333014825|gb|EGK34170.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-304]
 gi|333015641|gb|EGK34980.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-227]
          Length = 752

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI+ AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMSNLLKKELQADSDAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE I   + L     +    +  
Sbjct: 530 SFKSAVKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPITGKLTLPPGATVDHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  FI   ++++A  R GK  + +     +   + +  D+  +  +   
Sbjct: 590 EEQKLLMASDAGYGFICTFNDLVARNRAGKALISLPDNAHVMPPLVIENDNDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S         + G++ +        LT +    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPSAEAAKGEDGLAHLFILPPQSTLT-VHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  GS + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/760 (31%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++D PE + ++++E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV
Sbjct: 300 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  ++DE+IAIIR      + +  ++SRF L+E Q 
Sbjct: 359 IVRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E ++LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L  
Sbjct: 532 QGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLKLTD 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T    +        L   + +G       SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIISLNQNEIDEKSLFFTTRQGLVKRTSISEFTNIRQNGLRALNLKDGDELINVL 651

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             TG    ++G +    + F  + +  M RG  GV+  + +D     V    I +    +
Sbjct: 652 LTTGQDEIIIGTHFGYSVRFKEEVVRNMGRGATGVKGITLRDAD-QVVGASVIRDDQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + Y +           RGG G        ++G    
Sbjct: 711 VITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGSLAG 750



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 12/207 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +                E      + +G ++              L AL+ K+GD L 
Sbjct: 589 LTDGETIQTIISLNQNEIDEKSLFFTTRQGLVKRTSISEFTNIRQNGLRALNLKDGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     D I++ +  G +       ++   G G      I L     +V A V     
Sbjct: 649 NVLLTTGQDEIIIGTHFGYSVRFKE-EVVRNMGRGATGVKGITLRDADQVVGASVIRDDQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
           ++LV++ KG       SE     R GK     +  +K   +  +V V G + + ++ +  
Sbjct: 708 EVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGSLAGLVTVDGHEDIMIMTDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKD 694
            ++   +  I +  R   GV++    +
Sbjct: 768 VIIRTGVSNISQTGRSTMGVKVMRLDE 794


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/763 (32%), Positives = 416/763 (54%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   +A KK
Sbjct: 5   EKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A+ +L  +D+D VD +  +++   EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L+ +I  PDFPTGGI +   + + E++  GRG   +RA
Sbjct: 185 NLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGI-IYGYDGVKEAFHTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KASFEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ++ +  ++  ++ HR EV+ R
Sbjct: 303 IIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNG-RPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D +LA    +  +L   +++   I  E+ EVK  +     
Sbjct: 422 VEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDILARKERRMEIIKEELAEVKAKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+   E++ A      + MI  E + + IS+ G+I+              V   A 
Sbjct: 480 ---RRS---EINFAGGDLSMEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI +  +  
Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQNLISIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +     + G   + +  ++++   
Sbjct: 594 VKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPRQNGINAIGIREDDELLEA 653

Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-- 709
              TG     +G ++ K + F   +   M R   GVR  +  +    +VI     + L  
Sbjct: 654 KLTTGTSEIFLGLKSGKAIRFEESKTRPMGRNASGVRGITLANDD-DEVIGMVSVQNLEE 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 713 EILVVSEKGYGKRSSIEDYRVTNRGGKGVKTISITDKTGGLVA 755



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 21/250 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              +  GR       +   DK       Q + ++E +     ++ + +G ++        
Sbjct: 573 GSKSSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 ++A+  +E D L  A     T  I L    GKA             +   ++ +
Sbjct: 633 RPRQNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPMGRNASGVRGI 692

Query: 594 IDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
              N + +++      +   ++LVVS KG        +     R GK    +S  +K   
Sbjct: 693 TLANDDDEVIGMVSVQNLEEEILVVSEKGYGKRSSIEDYRVTNRGGKGVKTISITDKTGG 752

Query: 653 VVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICFKI 705
           +V +      D + ++ ++   +  S++ +  M R   GVRL +   KD   +     K 
Sbjct: 753 LVAIKNVSDSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKD 812

Query: 706 CEGLTWIDSA 715
            + +  ++  
Sbjct: 813 EDAVDELEEG 822


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/752 (36%), Positives = 452/752 (60%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E++++ +LL S ++  N I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASERKLSNLIKKEIQSDAQAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S   KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLHERSE-SKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS +      +   ++ + + G++Y L   +L S RG GE +   +       I    
Sbjct: 531 AGDSFRAVAKGKSNQPVVFIDSTGRSYALDPISLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ GD   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      ++       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/752 (36%), Positives = 443/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ A+++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  F+++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    +  EI+     +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLLKKEIQADAAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA     ++  EP+T+V+S  GW+RS K H +D + L++K
Sbjct: 477 GD-----DRRSPLKERAE-AKAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   +++IA  R GKT + +    K    +++ G  D +  +
Sbjct: 591 MAPEHQKLLMASDAGYGFVCTFNDLIAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKI-CEGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S        G    V  F +  +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPELSKGKGNKIVSIPAPDAAAGKDRLVWLFVLPPQTSITLHFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  +  +RG  GS +P+G  R  + 
Sbjct: 711 LTLRPEDLQKFRAERGRKGSPLPRGLQRIDRV 742


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/828 (31%), Positives = 405/828 (48%), Gaps = 92/828 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S+T        +++   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G
Sbjct: 1   MTMSDTTPTAERLPINIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            ++  ++KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  R+ L+ GQGNFG++DGDS
Sbjct: 61  NEWNRSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RMT++A  +L  +D++ V F   Y+    EP V P+K+PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEVRMTRLASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  ALID+PE+    L++YI GPDFPTGG  +  +  IV  Y  
Sbjct: 181 GMATNIPPHNLGEVIDATCALIDDPELDPRALMQYIPGPDFPTGG-SIHGQAGIVSGYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E    G   I+V E+PYQV K++L+E+IAEL+  K++  + D+RDES
Sbjct: 240 GRGSVIIRAKTVIETRKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++  +F  + M++ F +N   L  G  P  + L   L  +L
Sbjct: 300 DREGMRVVIEIKRDHQADVVLNQLFKHTAMQSSFGINALALVDG-RPVTLSLKAFLVAFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            HRREV+ RR+ F +     R  IL+GL +A  NID IIA+IR      + K  +++   
Sbjct: 359 KHRREVVTRRTIFELNKAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERW 418

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+ +Q  AIL++RL  L  LE  +I  E + 
Sbjct: 419 ERGPVEAMLARALGENDVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L E   +  +L S     + I  E+ E+KE ++       RRT   E            
Sbjct: 479 ILKEIAYLKGILASDGVLMDVIRQELLEIKERYANP-----RRTLIVEAVG---DFSIAD 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      SA   K+ D ++    A T D I L
Sbjct: 531 LIPEEEMVVTVSHGGYIKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFL 590

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            +  G+ + L    + SG     G+AI  L+ L   + +                 LL  
Sbjct: 591 FTDTGRVFKLKVYEIPSGSRLSRGKAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---------TGDH-------- 660
           + +G       S        G   + +   + +  V  +          GD         
Sbjct: 651 TRRGLIKKTVLSNYANIRTTGIRAINLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPE 710

Query: 661 -----------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                      + +  +  K + F+ +++  + R  +GVR    K  G   VI   + +G
Sbjct: 711 DESSADAAPGRIMLFAQGGKAVRFADEKVRRVGRVSQGVRGMRLK--GEDGVIALTVIDG 768

Query: 709 LTW---IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +    + Y +  +        RG  G +      ++G  +S+
Sbjct: 769 EAVGQLLTITEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSA 816



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           RI+L +  GKA       +       + ++ + +        +T    ++  +LL ++ K
Sbjct: 721 RIMLFAQGGKAVRFADEKVRRVGRVSQGVRGMRLKGEDGVIALTVIDGEAVGQLLTITEK 780

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G     + S+     R  +  + +   +K   VV        D V V+ +   +L   +D
Sbjct: 781 GYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGTVLRTKVD 840

Query: 677 QIPEMSRGK-GVRLQSYKDG-GISDVICFKICEGLTWIDSAG 716
            I    R   GVR+ +  +G  +  V      E +   D  G
Sbjct: 841 SIRVAGRATMGVRVLNVAEGERVVSVARLAEAEEVDAFDEEG 882


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALI+ P  ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDD 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVL 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTNGQEDIIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +  +        RGG G        ++G+   
Sbjct: 711 VITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  + I++ +  G +   
Sbjct: 612 FFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRF 671

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
               +   RG G +   +  + L     +V A   +   ++LV++  G       +E   
Sbjct: 672 NEATI---RGMGRSATGVRGVKLREEDWVVGASRINDNQEVLVITENGYGKRTSAAEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  ++ V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITAKNGQLAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        S ++ F + +
Sbjct: 789 VMRLDTD--SKIVTFTLVQ 805



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 29/251 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRAAKGL-PVINLLK--LDDGETIQTIINAKKEDILDKYFFFTTKQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT   E S               D+         +E I +  +  G+        IR
Sbjct: 619 IVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIG-TRSGYSVRFNEATIR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+
Sbjct: 678 GMGRSATGVRGVKLREEDWVVGASRINDNQEVLVITENGYGKRTSAAEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      D +  ++V+++KG       S I    R   G   +++ ++ K
Sbjct: 738 TANITAKNGQLAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSK 797

Query: 650 MKLVVKVTGDH 660
           +     V  + 
Sbjct: 798 IVTFTLVQAED 808


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 402/760 (52%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L    RI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDD 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVL 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTNGQEDIIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDKQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +  +        RGG G        ++G+   
Sbjct: 711 VITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  + I++ +  G +   
Sbjct: 612 FFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRF 671

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
               +   RG G +   +  + L     +V A   +   ++LV++  G       +E   
Sbjct: 672 NEATI---RGMGRSATGVRGVKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  ++ V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITAKNGQLAGLMTVDGNEDIVVITTKGVIIRTNVSSISQTGRSTLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        S ++ F + +
Sbjct: 789 VMRLDTD--SKIVTFTLVQ 805



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 29/251 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRAAKGL-PVINLLK--LDDGETIQTIINAKKEDILDKYFFFTTKQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT   E S               D+         +E I +  +  G+        IR
Sbjct: 619 IVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIG-TRSGYSVRFNEATIR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+
Sbjct: 678 GMGRSATGVRGVKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      D    ++V+++KG       S I    R   G   +++ ++ K
Sbjct: 738 TANITAKNGQLAGLMTVDGNEDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSK 797

Query: 650 MKLVVKVTGDH 660
           +     V  + 
Sbjct: 798 IVTFTLVQAED 808


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 HAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/763 (31%), Positives = 409/763 (53%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A+KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD    +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L++++  PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGI-IYGYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+VTEIPYQV K+ +I+K A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KAVIEEV-KGRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  G  P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNG-RPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+I IIR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIERFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDILANEPRRYQIIKDELLHIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSAL 543
            G  R +  E +  D     + MI    + V ISN G+         +            
Sbjct: 477 -GDERRSTIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLDEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G     G A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEQDDS 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              TGD  V +   + K + F   +   M R   GVR  +   ++  +  ++     E  
Sbjct: 654 KLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMES- 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 713 NILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVA 755



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 19/229 (8%)

Query: 493 GRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV------D 539
           GR       + + D      + Q +  +E I     ++ + +G ++              
Sbjct: 579 GRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG 638

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNH 598
           ++A+  KEGD L  A       +++L    GK+           GR       + +   +
Sbjct: 639 INAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHEN 698

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           ++ I    V D    +LVVS KG        +     R GK    ++  EK   +V +  
Sbjct: 699 DEVIGMVAVNDMESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVAIKN 758

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               + + ++ ++  ++  +++ +  M R   GVRL + KD      + 
Sbjct: 759 VDDSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVA 807


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L   +E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 IRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIRDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/824 (31%), Positives = 407/824 (49%), Gaps = 96/824 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F  +  K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRSHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EISIE+L+ +I GPDFPTG I +  R+ I E+YR GRG   VRA
Sbjct: 186 NLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAI-INGRKGIEEAYRTGRGKVYVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE   +G   I+VTE+PYQV K++LIEKIAEL+  K+I  +  I+D S +    ++ 
Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ M+  F +NM  L     P+V+ L  I++ ++ HRREV+ R
Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVAL-DHGQPKVLNLKQIIEAFVKHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL IA  NID +I +IRN                         
Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ L+E Q  AIL LRL  L  LE  +I  E   LL E
Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLTE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L+S ++    I  E+ +VK  F        RRT   E++ A      + +I +
Sbjct: 484 IGELLHILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L  +T D IL  S+ 
Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDL--NHNQDIVTAFV-----YDSTCKLLVVSSK 620
           G+ Y L    L   S    G  I  ++ L    N+ I          + +   + + ++ 
Sbjct: 596 GRLYQLKVYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATAS 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G    V           G   LK+   +++  V    G+  + +     +++ F+   + 
Sbjct: 656 GVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVR 715

Query: 680 EMSR-GKGVRLQSY----------KDGGISDV-------------------ICFKICEGL 709
            M R   GVR              +D  I ++                   +     EG 
Sbjct: 716 AMGRTATGVRGIKLATTEISSEEIEDAEIVEIENEEADESSVSLDTDRVVSLVIPRTEGD 775

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      + +        +  R   G +  K   R+GK +++
Sbjct: 776 -ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAA 818



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 79/229 (34%), Gaps = 40/229 (17%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +    + +  G ++ +   +        L AL  +EGD L           I+L S  G+
Sbjct: 646 DKFIFMATASGVVKKVSLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGR 705

Query: 572 A--YTLPAGNLLSGRGHG-EAIQL--------------LIDLNHNQ-----------DIV 603
              +   A   +     G   I+L              ++++ + +            +V
Sbjct: 706 VVRFAEKAVRAMGRTATGVRGIKLATTEISSEEIEDAEIVEIENEEADESSVSLDTDRVV 765

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
           +  +  +   +L V+  G        E    +R  K  + +   E+    +  V     D
Sbjct: 766 SLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEKAD 825

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            + ++ +   L+   + ++  + R  +GVR+    D   S V   ++CE
Sbjct: 826 QIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDE-SVVSVERVCE 873


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIKDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/752 (36%), Positives = 453/752 (60%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDMTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALIDNP+ +++ LL+++  PDFPT   I+ SR+ + + Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSVVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D++M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGLQEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR SFR+  + +R+ +L+GLL+A+LNIDE+I IIR+ED+PKPV+++RF L++ 
Sbjct: 357 FRRDTVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPVLMARFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E+++I  +L S ++  + +  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQIQDILASERKMSSLLKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  +  +   EP+T+V+S  GW+RS K H +D S L++K
Sbjct: 477 GD-----DRRSPLQERAE-AKAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     +    
Sbjct: 531 AGDNYRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     +LL+ S  G  FI   S+++A  R GK  L +    K+   ++V+ D   +  +
Sbjct: 591 MTADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLALPDNAKVLPPLEVSHDDDLLLTI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDVICFKI--CEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ +        G   ++  ++        + S  R 
Sbjct: 651 TAAGRMLLFPVADLPQLSKGKGNKIVAIPAAQAASGEDRILWLQVISPRATVTLHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           Y     +L  +   RG  G+ +P+G  R  + 
Sbjct: 711 YALRPEELQKFTASRGCKGTTLPRGLQRVDRV 742


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/833 (31%), Positives = 416/833 (49%), Gaps = 106/833 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE++I++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+
Sbjct: 305 VIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVV 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+G  +A  NID +IA+I+    P                   
Sbjct: 364 TRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVE 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                   ++ L+  Q  AIL LRL  L  LE  ++  E   +L
Sbjct: 424 MVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A        +I
Sbjct: 484 TQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLI 535

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +E   V IS+ G+ ++         +      SA   K+ D +   L A++   +L+ S
Sbjct: 536 TEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFS 595

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------------- 609
           + GK Y L    +   S    G  +  L+ L+  + I T    D                
Sbjct: 596 SKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALE 655

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         + + ++ G                G   L+
Sbjct: 656 AELDDAENSNETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALE 715

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   + +       G+  + +  +  K+  F    +  M R  +GVR     +G    +I
Sbjct: 716 LDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLI 773

Query: 702 CFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 774 SMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 826



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  SV L AL   EGD L  A
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILISA 725

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 726 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 784

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 785 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 844

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 845 VRTRVGEVSSLGRNTQGVTLIKLASD 870


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/772 (31%), Positives = 399/772 (51%), Gaps = 37/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L++NP+I+ E L++ I GPDFPTGG+++  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+++ F      G  R T  +V        +  +  +E I V +++ G+I+      
Sbjct: 472 ELMEIQKRF------GDERRTELQVGDITNIEDEDLIE-EEDIIVALTHNGYIKRLPVDE 524

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D ++  + + T D +L  +  GK Y++    +        G
Sbjct: 525 FKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             I  L+ +N+ + I           D    L   +  G       +E       G   L
Sbjct: 585 IPIINLLGINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKAL 644

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +   +++  V  ++ D   ++G  N   L F    +  M R   GVR    +D     +
Sbjct: 645 NLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-I 703

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      +  +   + +  +     +  RGG+G        ++G  + 
Sbjct: 704 GAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVG 755



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
             +     + +      +  G ++           S  L AL+  E D L          
Sbjct: 603 INVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQ 662

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G A +  +  + S       ++  I L     ++ A   +S  K+LV+S  G
Sbjct: 663 PMIIGTHNGYALSFKSSVVRSMGRSAAGVRG-IRLRDEDYVIGAAPLNSDSKVLVISENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  SE     R G     V+       +  +  V GD  + +V +   ++ F I+ 
Sbjct: 722 FGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIES 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVIC 702
           + +  R   GV L    +G     I 
Sbjct: 782 VSQTGRSAVGVHLIKIDNGARVATIA 807



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIA 554
              D+    + + E +P+ +  ++ G+        +RS+   +  +  +  ++ D +  A
Sbjct: 647 HENDELIDVEVISEDQPMIIG-THNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYVIGA 705

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              ++  ++L++S +G      A         G  ++ +     N  +V     +    +
Sbjct: 706 APLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVGLTTVNGDEDI 765

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           ++V+ +G         +    R   G   +K+ +  ++  + KV
Sbjct: 766 MLVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARVATIAKV 809


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKD-------GGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S           G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  GS + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/753 (33%), Positives = 423/753 (56%), Gaps = 31/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            ++++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+E+GL   AA+K
Sbjct: 8   NQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A + LI+NP+  + +++E+I GPDFPTGGII   ++ I+ +Y+ GRG  +VR
Sbjct: 188 HRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIF-GKQGILNAYKTGRGRIKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+V +    IV+ EIPYQV K+RLIE+IA+++  K++  + +IRDES  +   V+
Sbjct: 247 AKTHIEKV-KNREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +  D+++ +++  + ME  F + +  +     P+V  L  +L  +L HRR ++ 
Sbjct: 306 IELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKE-PKVFTLLELLHLFLNHRRTIVI 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLL A  NIDE+IA I+  +     +  ++ +F LTE Q +A
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEKFELTEIQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++++E   L+ E E++ ++L S ++    I  E+ E+KE F+   
Sbjct: 425 ILDMKLQRLTGLEREKLENEYKELMEEIERLSAILKSEEKLNEIIKTELLEIKEKFTTP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     E+  + +    + +I  EP+ V I++RG+I+          K      +A
Sbjct: 484 -------RLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKTA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           +   E D ++    ++T D ++ ++  G+ Y L    +        G+A+  L+ L  ++
Sbjct: 537 VTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAGRTAKGKAVVNLLQLQPDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVK 655
            I        +     L   +  G       +E      KG   + +   +++    +VK
Sbjct: 597 KIKAIIPTTDFSEDKSLAFFTKNGIVKRTNLAEFSNIRSKGVRAITLDESDELVEAKIVK 656

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWID 713
                + ++ +    + F +  + EM R  +GV    +K  G   V    I  E    + 
Sbjct: 657 PETKWLFIITKKGMCIRFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEEQELLT 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            + +   +           RGG G +  K   +
Sbjct: 717 VSEKGIGKRTQASEYREQSRGGKGVIAMKLTHK 749



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 13/215 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +     KA +      ++      +  G ++           S  + A+   E D L  A
Sbjct: 593 QPDEKIKAIIPTTDFSEDKSLAFFTKNGIVKRTNLAEFSNIRSKGVRAITLDESDELVEA 652

Query: 555 LHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTC 612
                  + L + +  G     P  ++         +  +        +V A  +     
Sbjct: 653 KIVKPETKWLFIITKKGMCIRFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEEQ 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
           +LL VS KG     + SE    +R GK  + +    K   VV V        + V+  + 
Sbjct: 713 ELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLTHKTGDVVGVVTVENNKDLMVLTSSG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           K++   ++ I +  R   GV +   + G     I 
Sbjct: 773 KMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIA 807


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/809 (31%), Positives = 420/809 (51%), Gaps = 78/809 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +    +K +++   +   ++ YA+S I  RA+PD+RDG KP HRRI++AM+++G
Sbjct: 1   MSDQQGI----IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVGEVIGK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 57  IRADKPHKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDS 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  I++ ++++ V+F+D Y+  + EP V PS+FPNLL NG+SGIAV
Sbjct: 117 AAAMRYTEARMSKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  
Sbjct: 177 GMATNIPPHQLGEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEIL-GRSGIRRAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+  +    I+VTE+PYQV K+RL+EKIA+L+  K+I  + D+RDES
Sbjct: 236 GRGSLIVRAKAEIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDES 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 V+    R  +  +++ +++  + M+T F +NM  +     P+ + L  +L  +L
Sbjct: 296 DRRGMRVVMEIRRDANASVILNNLYKQTSMQTTFGVNMLAIV-SGRPRTLTLKEMLYHYL 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H++E++ RR+ F ++  + R  +L GL IA  ++DE+I II   R  D  +  ++ RF 
Sbjct: 355 EHQKEIVRRRTQFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMERFE 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL++RL+ L  LE  +I +E D ++A   ++  +L S +     I  E+ EV
Sbjct: 415 LSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRILESDEVLLELIRTELEEV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           KE F+      +RRT   E+         + +I ++ I + +++ G+I+          +
Sbjct: 475 KERFND-----QRRT---EIRMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDSYRAQR 526

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D +   L   T D IL  +  GK Y +    +   S    G  I  
Sbjct: 527 RGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMSRTSKGVPIIN 586

Query: 593 LIDLNHNQDIVTAFVY-------------------------------------------- 608
           LI +  ++ + T                                                
Sbjct: 587 LIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEEPEEALDAEEV 646

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
             D    L+ ++ KG       S      + G   +++  ++++  V    T D V  V 
Sbjct: 647 MQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLASTEDEVFTVS 706

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSE 723
              K + F I  +  M RG +GV+  +     I  VI  ++  +    +    + + +  
Sbjct: 707 NTGKAIRFPITNVRSMGRGARGVKAMNLSADAI--VIGMELARDEQDVLVITEKGFGKRT 764

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    RGG G +  K   R G+ ++
Sbjct: 765 PMTEFRTQSRGGKGLIASKVTDRVGQIVA 793



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALH 556
              +    ++ M +++   + ++ +G ++        + +   L A+   E D L     
Sbjct: 636 EPEEALDAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRL 695

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A T D +  +S  GKA   P  N+ S  G G      ++L+ +  ++   +      +LV
Sbjct: 696 ASTEDEVFTVSNTGKAIRFPITNVRSM-GRGARGVKAMNLSADAIVIGMELARDEQDVLV 754

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLI 672
           ++ KG       +E    +R GK  +     +++  +V +      D + ++ E+  ++ 
Sbjct: 755 ITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTESGIVIR 814

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
                I  + R  +GV++   ++G     + 
Sbjct: 815 TDSQNISSVGRNAQGVKVIRIEEGDRVATVA 845


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/755 (33%), Positives = 404/755 (53%), Gaps = 29/755 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI+ AM E+   +   +KKSAR
Sbjct: 7   EQINIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSAR 66

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGDQSVYD+LVR+AQ F  R P++ GQGNFG+IDGD+AAA RYTE RM+
Sbjct: 67  VVGDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMS 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A   L  ++++ V FR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 127 RLAGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+  L  +DNP   I++++  I GPDFPTG  I   R  + ++Y  GRG  ++R R  
Sbjct: 187 ELCDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGR-GLYDAYTTGRGSIKIRGRVE 245

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VEE  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    
Sbjct: 246 VEERKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLK 305

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + +  D++  +++  + +ET F +NM V++  R    + +  +L+ +LAHRREV+ RR++
Sbjct: 306 KGVIADIITNALYKYTPLETSFGINMMVVADNRPA-TLNIQQMLEHFLAHRREVILRRTA 364

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + ++  + R  IL+GL IA  NIDE++AIIR      + +  ++ RF L+E Q  AIL++
Sbjct: 365 YDLRKSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMERFGLSERQAQAILDM 424

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  ++  E + L+   E + S+LN+ +     I  EI+E+++ ++       
Sbjct: 425 RLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATPRK--- 481

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
                 EV    +      +I  E + + +S RG+I+          K     ++ +   
Sbjct: 482 -----TEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTS 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
             D ++         ++LL +  G+ + LP   +  G     G  I  L+ ++  + + T
Sbjct: 537 ADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVAT 596

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           A     + S    L V+ +G                G   + +   +++  V ++  +  
Sbjct: 597 ALAIREFSSERYFLFVTKRGMVKRSCTELYKNCRSTGIIAVSLKEGDELLTVKEIDDNAE 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRS 718
           V +  +      F I  I    RG  GV+  + K    ++  +          +  +   
Sbjct: 657 VLLATQQGLSNRFHISGIRPTGRGAAGVKGIALKGADRVAAGVIMTGNGRNEVLTVSANG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  +     L  RGG G +  +  P++G+ + +
Sbjct: 717 YGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGA 751



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 14/203 (6%)

Query: 517 KEPITVVISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E   + ++ RG ++   +       S  + A+  KEGD L           +LL +  G
Sbjct: 605 SERYFLFVTKRGMVKRSCTELYKNCRSTGIIAVSLKEGDELLTVKEIDDNAEVLLATQQG 664

Query: 571 KAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
            +       +  +GRG      + +              +   ++L VS+ G        
Sbjct: 665 LSNRFHISGIRPTGRGAAGVKGIALKGADRVAAGVIMTGNGRNEVLTVSANGYGKRTSIE 724

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
                 R G   + +     + + +  V+ +  D + ++    K++  S+  I  + R  
Sbjct: 725 HYPLRNRGGSGVINMRVTPKTGQVIGAVMVLPEDDLLLLTSANKIIRLSVSGISSVGRAT 784

Query: 686 -GVRLQSYKDGGISDVICFKICE 707
            GV L   ++     V  F + +
Sbjct: 785 QGVMLVRMEND--DTVTGFDLVD 805


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/749 (39%), Positives = 458/749 (61%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+ + +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KK
Sbjct: 8   ESNETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ A+++L+ V +  VD+   ++    EP V PS+ PNLL NGT+GIAVGMAT IP 
Sbjct: 128 SRLSKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EI  A + L++NP   ++ LL ++ GPDFPTGG I+  +  IV  Y  G+G  + R
Sbjct: 188 HNLREIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETGKGQIKAR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+ +EE       IVV E+P+QV  S+++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 248 ARFTIEE-----GEIVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESDHENPTRL 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ PK+  +D D +M  +F  +D+E  + +NMNV+ +  +PQV PL   L EWL  R +V
Sbjct: 303 VIVPKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLSEWLRFRIDV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  FR+  ++ R+ IL+GLLIAYLNIDE+I IIR E+KPK  +++RF L++ Q ++I
Sbjct: 363 VRRRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKPKVELMARFGLSDMQAESI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +IK E D L  E+++++ LL+S ++    I  EI+E  +      D
Sbjct: 423 LELKLRHLAKLEEMRIKGEQDELEKERKQLEGLLSSDRKLKKLITEEIQEAID------D 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R T     +  +A  ++ ++  +PITVVIS +GWIR+ K H +D++ L +K GD  
Sbjct: 477 FGDDRRTPIVARKEAQAFSEEDLLSNDPITVVISKQGWIRAAKGHDIDVNGLSYKSGDEF 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            ++    +   ++LL+++G+ Y++ A  L S RG GE I   I L  +  IV+A + +  
Sbjct: 537 LVSTKGRSNQTLVLLASNGRTYSIKAHTLPSARGQGEPITGRISLEKDATIVSAVLDNEE 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
              L+ S  G  F+ +  ++ A  + GK  L +    ++   V V       V  +    
Sbjct: 597 AHYLIASDAGYGFVAQLKDLYAKNKAGKATLSLPKGARVMAPVPVQDPVSGRVVAISNEG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L F +  +P+M++GKG ++ S        ++  +  + C +  + L    +  R  + 
Sbjct: 657 RMLAFDVASLPQMAKGKGNKMLSIPSSRAADREELVIALACVQPND-LLTAYAGKRFISF 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +E DL  +LG+RG  G  +P+GF R    
Sbjct: 716 TEKDLEEYLGERGRRGLKLPRGFQRIDSL 744


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/805 (31%), Positives = 404/805 (50%), Gaps = 81/805 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM+++G     A+KKSA
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD SVYD++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM
Sbjct: 84  RVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L  +D++ VDF   Y++   EP+V PSKFPNLL NG+SGIAVGM T+IP HN+
Sbjct: 144 ERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHNM 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    L LIDNP  ++  L+E+I GPDFPTG I +  RE IV +Y  GRG   +RAR 
Sbjct: 204 TEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAI-ITGREGIVRAYETGRGQVTIRARS 262

Query: 257 CVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E   RG    I+ +EIPYQV K+RLIEKIAEL+  K++  + DIRDES      ++  
Sbjct: 263 DIETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIE 322

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +++ +++ ++ +ET F   M  +  G  P+ + L  +L  ++AHRR+V+ RR
Sbjct: 323 LKRDAISQVVLNNLYAMTSLETTFGAVMLAI-DGGQPRTLNLKEMLDRFIAHRRDVVTRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R+ I++GLL+A   ID ++++IR    P                      
Sbjct: 382 TRYELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFA 441

Query: 418 ----------------------------------VSRFSLTENQVDAILNLRLRSLRKLE 443
                                                   +E Q   IL +RL+ L  L+
Sbjct: 442 TLQRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGFSEGQAQNILEMRLQRLTGLQ 501

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++  EL  L+ +  ++  +L + +   N I  E+ E++E +        RRT   E++
Sbjct: 502 REELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGDK-----RRT---EIT 553

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A      + +I +E + V +S+ G+I+          K      +    KE D +    
Sbjct: 554 GAVDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLF 613

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A T   ++ ++T GK Y+L    +   S    G+A+  L+     + +    V   +  
Sbjct: 614 VASTHAYLMPITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGERLAQVLVTRDFPE 673

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
              +  V+ +G     + S        G   L +   +++  V+   G   + +   +  
Sbjct: 674 NRYVFFVTKRGVVKRTDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASGM 733

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLL 727
            + F   ++  M R   GV+  + +DG   +V+   + E     +      Y +   +  
Sbjct: 734 SIRFPETEVRSMGRQAYGVKGITLEDG--DEVVGADVVETDAAILTVTENGYGKRTQEAE 791

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
                RGG G +  K   R+GK + 
Sbjct: 792 YRQQGRGGKGIIDIKTTERNGKVVG 816



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
            F E  R  +  + +    +      ++ RG ++     +        + AL   +GD L
Sbjct: 655 QFGEGERLAQVLVTRDF-PENRYVFFVTKRGVVKRTDLSAFENVRSSGIIALGIDDGDEL 713

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              +    +  ILL +  G +   P   + S       ++  I L    ++V A V ++ 
Sbjct: 714 VAVMITDGSKDILLSTASGMSIRFPETEVRSMGRQAYGVKG-ITLEDGDEVVGADVVETD 772

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             +L V+  G     +E+E     R GK  + + + E+   VV +      D V +V   
Sbjct: 773 AAILTVTENGYGKRTQEAEYRQQGRGGKGIIDIKTTERNGKVVGLLQVKEADEVMLVTNG 832

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             L+   + +I  + R  +GVRL + ++     +   K+ E     ++  
Sbjct: 833 GMLIRMRVKEISVIGRNTQGVRLIALENEQEKVMAISKLPESDESEENGE 882


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/790 (30%), Positives = 393/790 (49%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   +   YL YA+S I  RA+PD RDG KPVHRR++ +M + G  +   + KSA
Sbjct: 8   IVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYSKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVG+V+GK HPHGD ++YD+LVR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE+RM
Sbjct: 68  TIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRYTESRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VDF   Y+    EP V P+  PNLL NG+SGIAVGMAT+IP H++
Sbjct: 128 AKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNIPPHHL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  +A L L+D+PE ++  L+ Y+ GPDFPTG + +   + I E+Y  G+G   +RA+ 
Sbjct: 188 GETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGAL-INGTKGIYEAYETGKGRIYIRAKT 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   IVV E+PYQV K+ L+ KIAEL+  K+I  +  +RDES +D   ++  
Sbjct: 247 HIETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIRMVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  +F  + ++T F +NM  L  G  P+++ L  +L  ++AHRREV+ RR
Sbjct: 307 VRRGEVAEVILNQLFQQTQLQTTFSVNMVALV-GGQPKLLGLKSLLNVFIAHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + + ++    R  IL+GL +A  NID+II++I++  +P                      
Sbjct: 366 TIYELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAVMLA 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + L+  Q  AIL+LRL  L  LE+ +I  E  +++ + 
Sbjct: 426 HAGAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSIIRDI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E   ++L+  ++    I  E+  +K  F+       +R T             + +I +E
Sbjct: 486 EGFLAILHIPERLVAVIKEELLAIKAQFND------QRCTHI--LDTHLDLSMEDLIAEE 537

Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              + +S+ G+I+        + +      S    K+ D ++    A+T D +L  S  G
Sbjct: 538 DRVITLSHEGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKG 597

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFI 625
           K Y L    L   S    G+ I  L+    ++    I+T   Y     L   +  G    
Sbjct: 598 KVYWLKVYELPHASRNAKGKPIVNLLPFEADERLNAILTTREYPEDLYLFFATQNGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG 684
              SE       G   + +  ++++  V    G+ ++ +     K + FS + +  M R 
Sbjct: 658 TPLSEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSMGRA 717

Query: 685 K-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR    + G     +C    +G   +      Y +           RG  G +    
Sbjct: 718 AGGVRGMRLEAGQKVIALCVLKDQGD-ILTITENGYGKRTPTADYPQKGRGTKGVISIMC 776

Query: 744 FPRSGKFLSS 753
             R+G  + +
Sbjct: 777 SERNGNAVYA 786



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 69/203 (33%), Gaps = 14/203 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L      ++      +  G ++              + A++ ++ D L   
Sbjct: 626 EADERLNAILTTREYPEDLYLFFATQNGTVKKTPLSEYSRPRANGIIAINLRDDDQLVDV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS-GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
              +    I+L S  GKA       + S GR  G  ++ +  L   Q ++   V      
Sbjct: 686 ELTNGERNIMLFSNAGKAVRFSEETVRSMGRAAG-GVRGM-RLEAGQKVIALCVLKDQGD 743

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRK 669
           +L ++  G       ++     R  K  + +     +   +  +     + + +V +N  
Sbjct: 744 ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERNGNAVYAIQVCEDEDIMLVTDNGT 803

Query: 670 LLIFSIDQIPEMSR-GKGVRLQS 691
           L+   + +I    R  +GVRL  
Sbjct: 804 LVRTRVCEISTSGRNTQGVRLIR 826



 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 18/191 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    IA  +R+  ++       G R       +       ++              
Sbjct: 664 SRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEET------------- 710

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
              +RS+   +  +  +  + G  +           IL ++ +G     P  +       
Sbjct: 711 ---VRSMGRAAGGVRGMRLEAGQKVIALCVLKDQGDILTITENGYGKRTPTADYPQKGRG 767

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
            + +  ++    N + V A        +++V+  G        EI  + R   G   ++ 
Sbjct: 768 TKGVISIMCSERNGNAVYAIQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRT 827

Query: 645 SSEEKMKLVVK 655
           +  EK+    K
Sbjct: 828 AESEKVIAAAK 838


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/773 (30%), Positives = 393/773 (50%), Gaps = 39/773 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDENLF--DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KS+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 59  YRPERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAV
Sbjct: 119 PAAMRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   +++NP+ S ++     +E + GPDFPT  +IV   + I +
Sbjct: 179 GMATNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIV-GDQGIKD 237

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++R    +EE  +G   IV+TE+PY V    L+  IA+ I   ++P    I
Sbjct: 238 AYTTGRGSIKMRGVTSIEEE-KGRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKI 296

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +E+ F +NM  +  G VP+ + LD +
Sbjct: 297 DDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDG-VPRTLRLDQM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +  H+ +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR        +  +
Sbjct: 356 LTLYTDHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  
Sbjct: 416 MELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELENTIADLKDILAKPERQRKIVED 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+RE+ +          RRT       A      + +I +E + V I++ G+        
Sbjct: 476 ELREIVDKHGDE-----RRTQLV---AATGDVTDEDLIAQENVVVTITSGGYAKRTKVDA 527

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            RS K     +     K  D ++      T D IL  +  G+ Y L A  +   S    G
Sbjct: 528 YRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + KG       ++  ++   G   + +
Sbjct: 588 QHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +   V  +G D + +V +  + + FS     +  M R   GV+   +KD      
Sbjct: 648 NEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLS 707

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +C    +G   + +    Y +           RGG+G    K  P+ GK + +
Sbjct: 708 MCVT-SDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGA 759



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKA--TLQQAMIEKEPITVVISNRGWIRSLKSH 536
           ++  +   +  T  G+      E    +     +Q    E EP  V+ + +G ++  +  
Sbjct: 573 LKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLT 632

Query: 537 SVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEA 589
             + S      A++  EGDSL  A+ +   D +LL+S  G+A    A + +L   G   A
Sbjct: 633 DYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATA 692

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---S 646
               +    + ++++  V      LLV +  G        E  A  R G     +     
Sbjct: 693 GVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPK 752

Query: 647 EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
             K+   + V  GD +  +     ++   + QI   SR   GVRL +  +G 
Sbjct: 753 RGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGV 804



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 137/429 (31%), Gaps = 36/429 (8%)

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RA   VE   +G    + V E   Q      + K+A L   K I  L ++ +  A+   
Sbjct: 402 IRASATVEVARQGLMELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELENTIADLKD 461

Query: 311 IVLFP-KNRSLDPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           I+  P + R +  D L E +    D           +V     + Q   +  I     A 
Sbjct: 462 ILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTITSGGYAK 521

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R +V   RS  R            G+  A L +D+++                + L    
Sbjct: 522 RTKVDAYRSQKRGGK---------GVRGAELKMDDVVRHFFVCST------HDWILFFTN 566

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNL-----LAEKEKIDSLLNSGKQQWNQIACEIREV 482
              +  L+   + +         + NL          ++  + +   + +  +A     V
Sbjct: 567 FGRVYRLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRV 626

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRS 532
           K+      +  R             + +   +   E   +++S RG           +R 
Sbjct: 627 KKSRLTDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRP 686

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  + FK+ D L         D +L+ +  G           +    G  +  
Sbjct: 687 MGRATAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTT 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
           L        ++ A   +   +++ ++S G     E S+I  ++R   G   + + +   +
Sbjct: 747 LKYQPKRGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSL 806

Query: 651 KLVVKVTGD 659
             + +   D
Sbjct: 807 YAIDRNVED 815


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +    + + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPGVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVAGERGRRGT-LMRGLQRIDRV 737


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 398/769 (51%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 12  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 72  ARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 132 MAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+   A   ++N E S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG   
Sbjct: 192 LREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIT 250

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE S+   +
Sbjct: 251 MRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQ 309

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D+++ F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 310 RLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIE 368

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++    + E Q
Sbjct: 369 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 428

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E + 
Sbjct: 429 ANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYG 488

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  R+T        +     + +I +E I V ++  G+I+          K     
Sbjct: 489 D-----DRKTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KE D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 541 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 600

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEK 649
            ++ I        Y++   L++ +  G        +  +    G   + +       +++
Sbjct: 601 PDETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDE 660

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++   +
Sbjct: 661 LIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREG--DELLSMNV 718

Query: 706 CEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               T++  +    Y +  +     +  RGG+G    K     G  + +
Sbjct: 719 VRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 767



 Score = 44.4 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 692 LRPMGRATSGVKGMSFREGDELLSMNVVRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V +   ++L ++  G       + +    R   G   + +   
Sbjct: 752 IKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKR 811

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 812 DAVVGIAR 819


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/773 (30%), Positives = 393/773 (50%), Gaps = 39/773 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ N    + V  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDENLF--DRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F KS+R V + +G+ HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+   D 
Sbjct: 59  YRPERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDG 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + ED V+F+  Y+ + +EP V PS+ PNLL NG++GIAV
Sbjct: 119 PAAMRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+ EA   +++NP+ S ++     +E + GPDFPT  +IV   + I +
Sbjct: 179 GMATNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIV-GDQGIKD 237

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  ++R    +EE  +G   IV+TE+PY V    L+  IA+ I   ++P    I
Sbjct: 238 AYTTGRGSVKMRGVTSIEEE-KGRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKI 296

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R   P +++ ++F  S +E+ F +NM  +  G VP+ + LD +
Sbjct: 297 DDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDG-VPRTLRLDQM 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +  H+ +V+ RR+ FR+ A ++R  IL+GL+ A   +DE+IA+IR        +  +
Sbjct: 356 LTLYTDHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGL 415

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q   IL+++LR L  LE  +I  EL  L      +  +L   ++Q   +  
Sbjct: 416 MELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEETIADLKDILAKPERQRKIVED 475

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+RE+ +          RRT       A      + +I +E + V I++ G+        
Sbjct: 476 ELREIVDKHGDE-----RRTQLV---AATGDVTDEDLIAQENVVVTITSGGYAKRTKVDA 527

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            RS K     +     K  D ++      T D IL  +  G+ Y L A  +   S    G
Sbjct: 528 YRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYEIPEASRTARG 587

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + KG       ++  ++   G   + +
Sbjct: 588 QHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLTDYESSRSAGLIAINL 647

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +   V  +G D + +V +  + + FS     +  M R   GV+   +KD      
Sbjct: 648 NEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATAGVKGMRFKDDDELLS 707

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +C    +G   + +    Y +           RGG+G    K  P+ GK + +
Sbjct: 708 MCVT-SDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGA 759



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKA--TLQQAMIEKEPITVVISNRGWIRSLKSH 536
           ++  +   +  T  G+      E    +     +Q    E EP  V+ + +G ++  +  
Sbjct: 573 LKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGRVKKSRLT 632

Query: 537 SVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEA 589
             + S      A++  EGDSL  A+ +   D +LL+S  G+A    A + +L   G   A
Sbjct: 633 DYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRATA 692

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---S 646
               +    + ++++  V      LLV +  G        E  A  R G     +     
Sbjct: 693 GVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPK 752

Query: 647 EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
             K+   + V  GD +  +     ++   + QI   SR   GVRL +  +G 
Sbjct: 753 RGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGV 804



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 138/430 (32%), Gaps = 38/430 (8%)

Query: 252 VRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RA   VE   +G    + V E   Q      + K+A L   K I  L ++  E+  D++
Sbjct: 402 IRASATVEVARQGLMELLDVDEEQAQHILDMQLRKLAALERQKIIDELAELE-ETIADLK 460

Query: 311 IVLF--PKNRSLDPDLLMESIFMLSDMETR--FPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +L    + R +  D L E +    D           +V     + Q   +  I     A
Sbjct: 461 DILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTITSGGYA 520

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R +V   RS  R            G+  A L +D+++                + L   
Sbjct: 521 KRTKVDAYRSQKRGGK---------GVRGAELKMDDVVRHFFVCST------HDWILFFT 565

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNL-----LAEKEKIDSLLNSGKQQWNQIACEIRE 481
               +  L+   + +         + NL          ++  + +   + +  +A     
Sbjct: 566 NFGRVYRLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDEPYLVLATRKGR 625

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IR 531
           VK+      +  R             + +   +   E   +++S RG           +R
Sbjct: 626 VKKSRLTDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLR 685

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   +  +  + FK+ D L         D +L+ +  G           +    G  + 
Sbjct: 686 PMGRATAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVT 745

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
            L        ++ A   +   +++ ++S G     E S+I  ++R   G   + + +   
Sbjct: 746 TLKYQPKRGKLIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVS 805

Query: 650 MKLVVKVTGD 659
           +  + +   D
Sbjct: 806 LYAIDRNVED 815


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/772 (31%), Positives = 419/772 (54%), Gaps = 46/772 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E I+  ++++ VDF+  +++   EP V P++ P LL NG +GIAVGMAT++P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA +DN +I +++L+ +I  PDFPTGGI +   E + E+++ GRG   +RA
Sbjct: 185 NLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGI-IYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I++ A+L+  K+I  + +IRDES  +   +++
Sbjct: 244 KVGFEEV-EGRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKG-RPQLLNLKDMIHYFIEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L++ Q  AI
Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIERFKLSDIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E + +LL     + + I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALLADVNLRIDLIKEELTEIRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I+              V   + 
Sbjct: 477 -GDDRRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLSEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    A     ++  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 GTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +T  L++V+ +G        +       G   + +   +++   
Sbjct: 594 VKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKPRANGVAAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-----KIC 706
               G+  + +  ++ KL+ F   +   M R   GVR  + KD    +VI          
Sbjct: 654 KLTDGESQIILAVKSGKLVRFEETKTRPMGRTASGVRGITLKDD-TDEVIGMVTVGKNDV 712

Query: 707 EGLTWIDSAGRSYNRSEN------DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +      Y +         + +  +  RGG G        ++GK +S
Sbjct: 713 ADSQILVVTENGYGKRTKLVDDDGEDVYRITNRGGKGVKTLNITDKTGKLIS 764



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 23/219 (10%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+++ +G ++        K  +  ++A+  KEGD L  A       +I+L    GK    
Sbjct: 615 VMVTKQGQVKKTSLEKYSKPRANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRF 674

Query: 576 PAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESE- 630
                   GR       + +  + ++ I    V     +  ++LVV+  G     +  + 
Sbjct: 675 EETKTRPMGRTASGVRGITLKDDTDEVIGMVTVGKNDVADSQILVVTENGYGKRTKLVDD 734

Query: 631 -----IIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                     R GK    ++  +K   +  +  VT  D + ++ ++   +  +I+ +  M
Sbjct: 735 DGEDVYRITNRGGKGVKTLNITDKTGKLISINAVTDSDDLMIINKSGLTIRMAIEDLRVM 794

Query: 682 SRGK-GVRLQSYKDGGISDVI--CFKICEGLTWIDSAGR 717
            R   GVRL + K       +    K       +D  G 
Sbjct: 795 GRATQGVRLINLKGKDSIAAVTKVMKDDAEEVVVDEDGN 833


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/748 (36%), Positives = 432/748 (57%), Gaps = 23/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++    EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ +IDNP+  ++ L+E++ GPD+PT   I+ S+  + + Y+ GRG  ++R
Sbjct: 187 HNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        IV+T +P+Q   ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F  N+N+L +   PQV  L  I+ EWL +RR  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR+ED PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E+E+++ LL S ++    I  EI    E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIKKEILSDAEKYGDE-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E     KA  ++ +I  E ITVV+S++GWIR  K H VD + L +K GD+ 
Sbjct: 480 ---RRSPLVEREE-AKALTERDLIPSEAITVVLSDKGWIRHAKGHEVDPTTLSYKSGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    + L +DG++Y L + +L S R  GE I   ++L    ++    + +  
Sbjct: 536 LAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAEDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V     +     V     D +  +    
Sbjct: 596 QLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRS 722
           ++L+F I  +P++ +GKG ++ +               +     +    + +  R     
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARAKAREEFLSYLAVIGADTHVTLHAGKRKLCLK 715

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             DL  + G+RG  GS++P+G  R  + 
Sbjct: 716 PADLDNFRGERGRRGSMLPRGLQRVTRM 743


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/753 (32%), Positives = 401/753 (53%), Gaps = 29/753 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++   +   +KKSAR+V
Sbjct: 5   IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGDQSVYD+LVR+AQ F  R  ++ GQGNFG+IDGD+AAA RYTE RM+++
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L  ++++ VDFR  Y+    EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+  L L+D P   +  ++  + GPDFPTG  I   +  + E+Y  GRG  ++R R  VE
Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGK-GLTEAYTTGRGTIKIRGRAEVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    +V+ EIPY + KS L+EKIA LI   RI  + D+RDES      ++    + 
Sbjct: 244 ERKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           + PD+++ +++  + +ET F +NM V++  R   ++ +  +L+ +L HRR+V+ RR+ F 
Sbjct: 304 VIPDIVINALYKYTPLETSFGINMLVVADNRPA-LLNIKQVLEHFLTHRRDVILRRTRFD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R  IL+GL IA  NIDE+++IIR      + +  ++ RF L+E Q  AIL++RL
Sbjct: 363 LRKSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMERFGLSERQAQAILDMRL 422

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L  LE  ++  E + L+   E + S+L + +     I  EI+E+++ ++         
Sbjct: 423 QRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLRGVIRDEIKEIQDRYATPRK----- 477

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEG 548
               E+    +      +I  E + + +S RG+I+          K     ++ +     
Sbjct: 478 ---TEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGIAGVATAGD 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606
           D ++         ++LL +  G+ + LP   +  G     G  I  L+ ++  + + TA 
Sbjct: 535 DFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
               +      L V+ KG                G   + +   +++  V ++  +  V 
Sbjct: 595 SIREFSEERYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGLKENDELLTVKEIDDETEVL 654

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYN 720
           +  +      F I  +    RG  GV+  + K +  ++  +          +  +   Y 
Sbjct: 655 LATQQGLSNRFHISGVRPTGRGAAGVKGIALKGNDRVAAGVVITSVSRSEVLTVSANGYG 714

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +  RGG G +  +  P++G+ + +
Sbjct: 715 KRTSIEHYPIRNRGGSGVINMRVTPKTGQVIGA 747



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 16/204 (7%)

Query: 517 KEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E   + ++ +G ++   +       S  + A+  KE D L           +LL +  G
Sbjct: 601 EERYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGLKENDELLTVKEIDDETEVLLATQQG 660

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEE 628
            +       +    G G A    I L  N  +         S  ++L VS+ G       
Sbjct: 661 LSNRFHISGVRP-TGRGAAGVKGIALKGNDRVAAGVVITSVSRSEVLTVSANGYGKRTSI 719

Query: 629 SEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
                  R G   + +     + + +  V+    D + ++    K++  S+  I  + R 
Sbjct: 720 EHYPIRNRGGSGVINMRVTPKTGQVIGAVMVGDDDELLLLTSANKIIRLSVSGISSVGRA 779

Query: 685 K-GVRLQSYKDGGISDVICFKICE 707
             GV L    +     V+ F + +
Sbjct: 780 TQGVMLVRMDEN--DTVMGFDLVD 801


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/763 (31%), Positives = 414/763 (54%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+   ++ KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M ++A+ ++  +D+D VD    +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A ID+ +I +E L+E++  PDFPTGG  +   + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGG-TIYGYDGVREAFKTGRGRVVMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  C+VVTEIPYQV K+ +I+K A+L+  K+I  +  IRDES  +   +++
Sbjct: 244 KAVFEEV-QGRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  P+++ L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNG-RPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMERFKLTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE D+L+   E +  +L+  +++   I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQIIKDELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSVIEYAGGDMSI--EDMIPNEKVVITISHAGYIKRTPLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          ++  +  G+ + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKGRAIQNLINIEPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +       G   + +  ++++   
Sbjct: 594 VKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRINGINAITIKEDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD--VICFKICEGL 709
              TGD  + +  ++ K + F   +   M R   GVR     D    +   +        
Sbjct: 654 KLTTGDSEIMLAVKSGKCIRFEESKTRPMGRSASGVRGIRLADEKTDEVVGMVVVNNNDS 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 DILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVTSKTGELVA 756



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/457 (15%), Positives = 152/457 (33%), Gaps = 43/457 (9%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMN 344
           EL  A+    + +    +++++  V+     S + D   E +     L++++ +      
Sbjct: 366 ELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMERFKLTEIQAK------ 419

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--DE 402
            +   R+ Q+  L+                     +   +RR++I+K  L    +   DE
Sbjct: 420 AIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQIIKDELQEIKDKYGDE 479

Query: 403 IIAIIRNE----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
             ++I            +   +  +T +    I    L   +      +  +      E 
Sbjct: 480 RRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTEYKTQNRGGVGQKASTTRNE- 538

Query: 459 EKIDSLLNSGKQQWNQIACE------IREVKEIFSKSTDLGRRRTTFCEVSRADKA---T 509
           + ++ +      Q+     +      +R  +      T  GR       +   DK     
Sbjct: 539 DFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKGRAIQNLINIEPDDKVKAFI 598

Query: 510 LQQAMIEKEPI----TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT 559
             Q + +++ I     ++ + +G ++              ++A+  KE D L  A     
Sbjct: 599 CTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRINGINAITIKEDDELLEAKLTTG 658

Query: 560 TDRILLLSTDGKAYTLPAGN-LLSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              I+L    GK            GR   G     L D   ++ +    V ++   +LVV
Sbjct: 659 DSEIMLAVKSGKCIRFEESKTRPMGRSASGVRGIRLADEKTDEVVGMVVVNNNDSDILVV 718

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           S  G        +     R GK    +     + E + +      D + ++ ++   +  
Sbjct: 719 SENGYGKRSSLEDYRMTNRGGKGVKTISVTSKTGELVAIKNVTDDDDLMIINKSGIAIRL 778

Query: 674 SIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEG 708
           S++ +  M R   GVRL + K D  I+ V   K  E 
Sbjct: 779 SVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDED 815


>gi|332998728|gb|EGK18324.1| DNA topoisomerase IV, A subunit [Shigella flexneri VA-6]
          Length = 752

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNARAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/772 (32%), Positives = 406/772 (52%), Gaps = 32/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++I N        V+   L   +   +L Y++S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G+       KSAR VG+VIGK HPHGD +VYD++VRLAQ F  R PL+ G GNFG+
Sbjct: 61  MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+ + A  +L+ +D++ VD++  Y+E   EPVV P++FPNLL NG+
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP++++++L++ I GPDFPTGG+I+  R+ I 
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIM-GRKGIK 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VR+R  + E   G   IV+TEIPYQV ++ L++KI EL+  K++P + +
Sbjct: 240 DAYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISN 299

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +    ++     +  P +++  ++  + ++  F +    L  G VP+ + L  
Sbjct: 300 VHDGADRNSPVDIIIDLKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDG-VPRTLSLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           +L+ ++ H+ +V+ RR+ F ++  + R  IL+GLLIA  NIDE+I IIR      +    
Sbjct: 359 MLRHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASER 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  RF+L+E Q  AIL +RLR L  LE ++++ EL  L  +      +L+        I 
Sbjct: 419 LQERFNLSEAQTAAILEMRLRRLTGLERHKLEDELAELKEKIAYYKRILSDESLVREVIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----- 531
            E+ E+K  F+       RRTT C      +    + +I  E + V ++  G+++     
Sbjct: 479 EELLEIKGRFNTP-----RRTTLC---GEAEDIDVEDLIADEEVAVTVTKAGYVKRIPVS 530

Query: 532 ---SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                K     +  ++ KE D ++    A T   +L  ST GK Y L    +   S    
Sbjct: 531 AYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G AI  L+ L   + I        +     L+  + +G       +      R G   + 
Sbjct: 591 GTAIVNLLPLVKGESIAAVIATKDFPEDEYLMFGTEQGMVKKTSMNLYDRTRRDGLIAIN 650

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  ++++  V +V +G+ V +V    K + ++  ++  M R   GVR  +      + V+
Sbjct: 651 LKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSMGRDTMGVRGMTVPAN--TKVL 708

Query: 702 CFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +I    T  +      Y +           RGG G        + G   +
Sbjct: 709 GLEIARPDTDLLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTAKKGNLSA 760



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 20/243 (8%)

Query: 484 EIFSKSTDLGRRRTT-------FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
           +++         R T         +          +   E E +    + +G ++    +
Sbjct: 578 KVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPEDEYLMFG-TEQGMVKKTSMN 636

Query: 537 SVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
             D +      A++ KE D L       + + ++++S+ GKA     G + S       +
Sbjct: 637 LYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSMGRDTMGV 696

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSS 646
           + +  +  N  ++   +      LLV++  G       SE  ++ R G+      +    
Sbjct: 697 RGM-TVPANTKVLGLEIARPDTDLLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTAKK 755

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
                + V    D + ++ E+  ++      + E+ R   GVR+ +  +      +    
Sbjct: 756 GNLSAMKVVAESDELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAVAIST 815

Query: 706 CEG 708
            + 
Sbjct: 816 EDD 818


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/763 (31%), Positives = 394/763 (51%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV LAQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS++PNLL NG SGIAVGMAT+IP H
Sbjct: 127 RLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N+ E+  A   +IDN      +  I+++L+ + GPDFPTG  I+  R  I E+YR GRG 
Sbjct: 187 NLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHIL-GRAGIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA   +E +  G   IVVTE+PY V K+RLIE IA+++  KRI  + ++RDES  + 
Sbjct: 246 IIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDESNRNG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++P ++++ ++  + ++T F  NM  L     P VM L  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNE-PVVMNLKQMLGFYLEHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RRS + +   + R  IL+GLL+A   IDE+I+IIR      + K  ++ RFSL + 
Sbjct: 365 NVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLIGRFSLDDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++ E D+L    +++  +L   K+    I  EI  +++ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEILGDIKKLLGVIKEEINVIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+        D       +I  E   + ++N G+I+               
Sbjct: 485 GDE-----RRSQIV---ADDSDITNDDLIPDENTVIAMTNMGYIKRMTTDNFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   E D ++  L   T   IL  +  G+ Y L A  +   S    G A+  L+ L
Sbjct: 537 GIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKAYQIPEASRTARGTAMVNLLQL 596

Query: 597 NHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++    ++      +   L + + +G       SE     + G   + +  ++ +  V
Sbjct: 597 QPDEQVKAVINIRKEKTDGYLFMATKRGIVKKTALSEYANIRKTGLQAINLREDDDLIEV 656

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                +  + +V +N   + F+   +    R   GV   +  D    +++  ++  +G  
Sbjct: 657 KLTNNENDIFLVTKNGMCIRFNEKDVRPTGRTSMGVIGMTIDD--TDEIVAMQLDTQGAK 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     +           RGG G    K   ++G  + +
Sbjct: 715 LLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVEKTGLVIGA 757



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 12/192 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            + + RG ++              L A++ +E D L      +  + I L++ +G     
Sbjct: 618 FMATKRGIVKKTALSEYANIRKTGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRF 677

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
              ++         +  +  ++   +IV   +     KLL+VS  G     E SE     
Sbjct: 678 NEKDVRPTGRTSMGVIGM-TIDDTDEIVAMQLDTQGAKLLIVSENGLGKRTEISEFTTQH 736

Query: 636 RKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK        EK  LV+        + + ++ +   ++  +++ I  + R   GV+L 
Sbjct: 737 RGGKGVKCYKIVEKTGLVIGAKSVNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLM 796

Query: 691 SYKDGGISDVIC 702
           +     +   I 
Sbjct: 797 NVDGDNVIAKIA 808


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/822 (31%), Positives = 411/822 (50%), Gaps = 89/822 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T + +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M++ G  +  
Sbjct: 2   TELVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++ KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA R
Sbjct: 62  SYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P+LL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  LA +DN +ISI++L+++I GPDFPT  + +  R  I E+Y+ GRG  
Sbjct: 182 IPPHNLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAAL-INGRRGIEEAYKTGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE   +G   I++TEIPYQV K++L+EKI EL+  K+I  +  + D S ++  
Sbjct: 241 YVRAKASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R    ++++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRRE
Sbjct: 301 RLEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVAL-DHGQPRLFNLKQIIEAFVKHRRE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS----- 422
           V+ RR+ + ++    R  IL+GL IA  NID +I +IR     D+ +  ++SR       
Sbjct: 360 VVTRRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNV 419

Query: 423 -----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+E Q  AIL LRL  L  LE  +I  E   
Sbjct: 420 APMLEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++  +L S  +    I  E+  VK  ++       RRT   E++ A      + 
Sbjct: 480 ILLQIGELIRILTSSVRLNEVIREELELVKSTYNDE-----RRT---EITAASGDINLED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D IL 
Sbjct: 532 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILC 591

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            S+ G+ Y L    L        G  I  ++ L  N+ I        YD    +++ ++ 
Sbjct: 592 FSSRGRLYWLKVYQLPEASRGARGRPIVNILPLEDNERITAILPVASYDEDKFVVMATAC 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
           G       +E       G   + +  E+++  V    G + + +     +++ F+   + 
Sbjct: 652 GIVKKTALTEFSRPRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVR 711

Query: 680 EMSR-GKGVRLQSYK--------------------------DGGISDVICFKICEGL-TW 711
            M R   GVR                               D  I  V+   I +     
Sbjct: 712 AMGRTATGVRGIKLALTNDISDDESAVEIEEISDDNAEDTLDLNIDKVVSLVIPKNEGAI 771

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +    Y +           R   G +  K   R+GK +++
Sbjct: 772 LTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERNGKVVAA 813



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 83/233 (35%), Gaps = 38/233 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L  A  +++   V+ +  G ++        +  +  + A++ ++ D L   
Sbjct: 625 EDNERITAILPVASYDEDKFVVMATACGIVKKTALTEFSRPRANGIIAVNLRDEDELIGV 684

Query: 555 LHAHTTDRILLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQ--------- 600
                ++ I+L S+ G+        + A    +    G  + L  D++ ++         
Sbjct: 685 DITDGSNEIMLFSSQGRVVRFAEAAVRAMGRTATGVRGIKLALTNDISDDESAVEIEEIS 744

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                         +V+  +  +   +L  +  G       +E    +R  K  + +   
Sbjct: 745 DDNAEDTLDLNIDKVVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVS 804

Query: 648 EKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           E+   VV  T     D + ++ +   L+   + ++  + R  +GVRL    + 
Sbjct: 805 ERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAED 857


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/755 (37%), Positives = 451/755 (59%), Gaps = 26/755 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  A +A++DNP  S++ ++EYI GPD+PT   I+ S+E I + Y+ GRG
Sbjct: 182 TDIPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ PKN  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE +  R ++R++ + +R+ IL GLL AYL+IDE+I IIRNED+PKPV++ RF LTE 
Sbjct: 357 FRRETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPVLMQRFELTET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  EI    E +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDGLAKERDKLQAILGSERKLSTLLKKEIIADAENY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E S   KA     ++  EPITVV+S  GW+RS K H +D + L++K
Sbjct: 477 GD-----HRRSPLKERSE-AKAMSDHDILPSEPITVVLSEMGWVRSAKGHEIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTA 605
            GDS + A    +   ++ + T G++Y++   +L S RG GE +   L+ L     I   
Sbjct: 531 SGDSFRSAARGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLLALPAGASIEHL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            +     K L+ S  G  FI   S++IA  R GK  + +    K+   +++T    D + 
Sbjct: 591 LIAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +  +P++S+GKG ++ S         +  +S ++   +   +T +   
Sbjct: 651 AITKEGRMLMFPVADLPQLSKGKGNKIVSIPAAQAASGEDMLSWLLVLPVQSSIT-LYFG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 710 KRKLLLRPEDLQKFRAERGRKGTSLPRGLQRVERI 744


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 398/760 (52%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT                    E + + +SN+G+I+                
Sbjct: 485 DK-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T    D       L   +  G       S+       G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    +
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDSQEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +           RGG G  V     R+GK   
Sbjct: 717 VISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 597 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D + 
Sbjct: 657 LRTSGEDEVIIGTHLGYSVRFKGAIV---RDMGRAAAGVKGVNLREGDFVVGTSRIDDSQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 714 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 774 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 811



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 569 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 625

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 626 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM 685

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +        +  +L++S +G      A    +    G+ ++++
Sbjct: 686 GRAAAGVKGVNLREGDFVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 745

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 746 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 805

Query: 652 LVVKVT 657
               V 
Sbjct: 806 TFALVD 811


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 398/759 (52%), Gaps = 28/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G      
Sbjct: 1   MQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RY
Sbjct: 61  HKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +   
Sbjct: 240 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV
Sbjct: 300 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q 
Sbjct: 359 VERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT                    E + + +SN+G+I+                +
Sbjct: 479 K-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+ 
Sbjct: 532 QGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDD 591

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I T    D       L   +  G       S+       G   LK+   +++  V++
Sbjct: 592 GEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLR 651

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    + 
Sbjct: 652 TSGEDEVIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDNQEVLV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G  V     R+GK   
Sbjct: 711 ISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 749



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 590 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D   
Sbjct: 650 LRTSGEDEVIIGTHLGYSVRFKGAIV---RDMGRAAAGVKGVNLREGDFVVGTSRIDDNQ 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 707 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 766

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 767 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 804



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 82/246 (33%), Gaps = 26/246 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 562 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 618

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 619 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM 678

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +           +L++S +G      A    +    G+ ++++
Sbjct: 679 GRAAAGVKGVNLREGDFVVGTSRIDDNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 739 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 798

Query: 652 LVVKVT 657
               V 
Sbjct: 799 TFALVD 804


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/758 (35%), Positives = 443/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL  +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTQEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNLLTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+   L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLQQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            EI+        RR+   E     KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEIYGD-----DRRSPVVERLE-AKALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L+   + 
Sbjct: 530 LSYRAGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLSAGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPEGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYYGERGRRGNKLPRGLQRVDEAV 747


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 445/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP++ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV E+  AA+AL+ NP  ++E+LLE++ GPDFPT   I+  ++ + + Y  GRG
Sbjct: 182 TDIPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W VE+        V++ +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWTVED-----GEAVISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D   +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +FR++ + RR+ IL GLL+AYLN+DE+I IIR +D+PK V++ RF L+E 
Sbjct: 357 YRRDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEPKQVLMQRFELSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+LR L KLEE +++ E D L  E++KI ++L S ++  N +  EI      +
Sbjct: 417 QADAILELKLRHLAKLEEMKLRGEQDELEKERDKIQAILASERKLSNLLKKEIEADDAAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E     KA  +  ++  EP+TV++S  GW+RS K H +D S L ++
Sbjct: 477 GDA-----RRSPLIERGE-AKALSENELMPSEPVTVILSTMGWVRSAKGHDIDPSGLGYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   ++   +   ++ + + G++Y L    L S RG GE +   + L     +    
Sbjct: 531 SGDNYLSSVRGKSNQPVVFIDSTGRSYALEPACLPSARGQGEPLTGKLTLPPGAAVEQML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
                 KLL+ S  G  F+   S+++A  R GK  L +    K+   + + G  D +  +
Sbjct: 591 TGADERKLLMASDAGYGFVCSFSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
            E  +LL+F +D +P++S+GKG ++ S            ++ +        +T+     R
Sbjct: 651 TEAGRLLMFPVDDLPQLSKGKGNKIISIPSADAAAGKDRLAGLYLLSTKASVTF-YVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  DL  +  +RG  G+L+P+G     + 
Sbjct: 710 KLTLRPEDLQKFSAERGRKGTLLPRGLQHIDRV 742


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 398/760 (52%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT                    E + + +SN+G+I+                
Sbjct: 485 DK-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T    D       L   +  G       S+       G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    +
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREGDFV-VGTSRIDDNQEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +           RGG G  V     R+GK   
Sbjct: 717 VISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 597 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D   
Sbjct: 657 LRTSGEDEVIIGTHLGYSVRFKGAIV---RDMGRAAAGVKGVNLREGDFVVGTSRIDDNQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 714 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 774 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 811



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 82/246 (33%), Gaps = 26/246 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 569 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 625

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 626 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM 685

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +           +L++S +G      A    +    G+ ++++
Sbjct: 686 GRAAAGVKGVNLREGDFVVGTSRIDDNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 745

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 746 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 805

Query: 652 LVVKVT 657
               V 
Sbjct: 806 TFALVD 811


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/793 (32%), Positives = 411/793 (51%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YLAYA+S I  RA+PD+RDG KPVHRR + AM+E+G D+  A+KK
Sbjct: 6   QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L+ +++D VDF   Y+E +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA+I+NPEI++++L+EYI GPDFPT  I +  R  I+++YR GRG   VRA
Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAI-INGRAGIIQAYRTGRGRIYVRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +  +E         I++TEIPYQ+ K+RLIE+IAEL+  K++  + ++RDES +D   V+
Sbjct: 245 KADIEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R+   ++++ ++F  + +++ F +N+  L  G+ P+++ L  ++  +L HRREV+ 
Sbjct: 305 IEIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQ-PKILNLQQLIHHFLRHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR---------- 420
           RR+ + ++    R   L+G  IA  NIDEIIA+I+      + +  +V+R          
Sbjct: 364 RRTIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+  Q   IL LRL  L  +E  +I +E    L 
Sbjct: 424 LDRAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  +   +L    +    I  E+  V E F        RRT   E   +      + +I 
Sbjct: 484 EIAEYQDILGDLTRLMTVIREELEAVVEEFGDE-----RRTEIIE---SLHDLTIEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E   V ISN G+ ++         +   +  SA   K+ D ++  L A T   IL  + 
Sbjct: 536 EEDRVVTISNGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    +        G  +  L+ L   + I +      Y +   +++ ++ G  
Sbjct: 596 LGKVYWLKVYQIPVAGRNSRGRPVINLLPLGEGERISSILPVEEYSADKFVIMATANGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 +       G   + +   + +     +  D  V ++    K + F+      M 
Sbjct: 656 KKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSMG 715

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R  KGVR     +G   +VI   + E     +      Y +           RGG G + 
Sbjct: 716 RVSKGVRGMRLPEGH--EVISMVVPEEDGFLLTVCENGYGKRTKVDEFPTKGRGGKGMIA 773

Query: 741 PKGFPRSGKFLSS 753
            +   R+G  + +
Sbjct: 774 IQASERNGPLVGA 786



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 12/202 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
               + L       +   ++ +  G ++        +  SV L A+   EGD L      
Sbjct: 629 ERISSILPVEEYSADKFVIMATANGTVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAII 688

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                ++LLS++GKA    + +  S     + ++ +  L    ++++  V +    LL V
Sbjct: 689 DDDSDVMLLSSEGKAVRFASTDARSMGRVSKGVRGM-RLPEGHEVISMVVPEEDGFLLTV 747

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
              G     +  E     R GK  + +     +   +       GD + ++ +   ++  
Sbjct: 748 CENGYGKRTKVDEFPTKGRGGKGMIAIQASERNGPLVGATQLFAGDEIMLISDQGTMVRT 807

Query: 674 SIDQIPEMSR-GKGVRLQSYKD 694
             D++  + R  +GVR+   KD
Sbjct: 808 RGDEVSVVGRNTQGVRIIRLKD 829


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKD-------GGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S           G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  GS + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/758 (32%), Positives = 407/758 (53%), Gaps = 29/758 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T         +       + +G       SE     + G   + +   +++  V+
Sbjct: 592 GETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVL 651

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +   + V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +
Sbjct: 652 LIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGD-KVVGASRIVNGQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               + Y +           RGG G        ++G  
Sbjct: 711 IITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPL 748



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +            + +G ++              L A++ KE D L 
Sbjct: 589 LDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     + +++ +  G +       + +       ++  ++L     +V A    +  
Sbjct: 649 NVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRG-VNLREGDKVVGASRIVNGQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG     E SE     R GK      +   +    +LV     + + V+ +  
Sbjct: 708 EVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLARLVTINGNEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++        + ++   + E
Sbjct: 768 VIIRTNVANISQTGRSTMGVKVMRL--DQEAKIVTVALVE 805



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINARKEDVANKYFFFTTQQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT+  E S               D+      + E E + +  +  G+        +R
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIG-TRTGYSVRFKVNAVR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+
Sbjct: 678 NMGRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      +    ++V++  G       + I    R   G   +++  E K
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 650 MKLVVKVTGD 659
           +  V  V  +
Sbjct: 798 IVTVALVEQE 807


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/749 (35%), Positives = 444/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   E +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADAEAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    + +
Sbjct: 530 SFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEN 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  +   
Sbjct: 590 DDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +P++S+GKG ++ +       K      ++     +    I    R    
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAAKGEDSLALLYVLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L    G+RG  G+ + +G  R  + 
Sbjct: 710 RPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHILMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +      +    I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLP-SQSTLTIHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/757 (36%), Positives = 444/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ +S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDLEALSLQGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSSAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++LQ + +   D+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DNP+  +E+LLE++  PD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKMRAIYTEEQGD-----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  I  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    I  EI+E 
Sbjct: 416 ITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKLELTLGSERRMSTLIKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E +   KA  ++ +I  E +TVV+S +GW R  K H +D +A
Sbjct: 476 AELYGD-----DRRSPVIERAE-AKALSEKDLIPSEAVTVVLSEKGWARCAKGHDIDAAA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD  K      +   ++ L + G+A+   A +L + R  GE +    +++   + 
Sbjct: 530 LSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSLPTARSQGEPMTGRFNMSTGVNF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+   +++++  + GK  + +S+  ++   +KV   T D
Sbjct: 590 EHVVMGELDAMFLMASDAGYGFVASFADLVSKNKNGKALVSLSTGAQLISPIKVNDITTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S              VI     E    + 
Sbjct: 650 NCLAISNEGRMLMFPLRDLPKLGKGKGNKIISIPSARAKTREEFVSVIAVVPKESAVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  +LG+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKAADLEHYLGERGRRGNKLPRGLQRVDAI 746


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/758 (32%), Positives = 412/758 (54%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + V  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NDRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEI I +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIM-GRSGIRRAYETGRGSIVVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE   G   I++TEIPYQV K+RLIE+IAEL   K+I  + DI DES      ++
Sbjct: 245 ARVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIINNLYKMTALQTTFGINMLALVDNH-PKVLNLKQILYHYLEHQKIVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID +IA+IR+    +  K  ++++F L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTKFQLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+     + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEERILEIIREELEEIKIKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +        + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--TGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   E D ++  + A + D +L  +  GK Y      +        G  +  L+ +   +
Sbjct: 537 MSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPLINLLGIESQE 596

Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            +        +     L   +  G     + S+     + G   + +   +++  V    
Sbjct: 597 QVNAVINVSEFTENSHLFFTTKHGVVKRTDISQFAKIRQSGLRAVDLRENDELISVQITD 656

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
           G+ ++ +  +  + + F  + I  M R   GVR    ++    +VI  +I E     +  
Sbjct: 657 GNKNIIIATKQGQSIYFPENNIRVMGRTAAGVRGIRLRED--DEVIGMEILEDDQKVLIV 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + Y +        L  RGG+G        ++G  ++
Sbjct: 715 TEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 73/206 (35%), Gaps = 12/206 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +   +       +  G ++        K     L A+  +E D L  
Sbjct: 592 IESQEQVNAVINVSEFTENSHLFFTTKHGVVKRTDISQFAKIRQSGLRAVDLRENDELIS 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +  G++   P  N+         ++  I L  + +++   + +   K
Sbjct: 652 VQITDGNKNIIIATKQGQSIYFPENNIRVMGRTAAGVRG-IRLREDDEVIGMEILEDDQK 710

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+ KG       ++     R G   KT         +  +  V+G+  + ++  +  
Sbjct: 711 VLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVAMKTVSGEEDIMLMTVSGV 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKD 694
           ++ F I  + +  R   GV+L    +
Sbjct: 771 MIRFEIGTVSQTGRSAMGVKLIRLDE 796



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 25/216 (11%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVSRADKATL 510
           + S +Q    I   E  E   +F  +     +RT                ++   D+   
Sbjct: 592 IESQEQVNAVINVSEFTENSHLFFTTKHGVVKRTDISQFAKIRQSGLRAVDLRENDELIS 651

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            Q     + I +  + +G         IR +   +  +  +  +E D +          +
Sbjct: 652 VQITDGNKNIIIA-TKQGQSIYFPENNIRVMGRTAAGVRGIRLREDDEVIGMEILEDDQK 710

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++  G     PA         G  ++ +     N ++V          +++++  G 
Sbjct: 711 VLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVAMKTVSGEEDIMLMTVSGV 770

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
               E   +    R   G   +++   EK+  V KV
Sbjct: 771 MIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKV 806


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S  +  + +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASEHKMNSLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 447/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K+A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKVAVKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/862 (31%), Positives = 404/862 (46%), Gaps = 133/862 (15%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      + K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNP+I ++ L+EYI GPDFPT GI V     I+  YR GRG  R+RA
Sbjct: 186 NLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 RAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++ +++  + ME+ F +NM  L  G  PQ++ L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGEAADVVLNNLYQQTQMESVFGINMVALVDG-RPQLLNLKQMLEAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  IL+GL +A  NIDE+I +I+    P                     
Sbjct: 364 RTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLEA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +       I  E+  ++E +  +      R T    S  D   L   +I  
Sbjct: 484 ISGLIRILENPDVLLEVIREELVSIREEYGDA------RRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  +   I L   + +        Y     +   + KG   
Sbjct: 596 GKVFWLPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYADGHYVFFATRKGMVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI-------- 675
               SE     ++GK  + +   + +  V    G+  V +   N K + FS         
Sbjct: 656 KTPLSEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVD 715

Query: 676 ------------------------DQ-----------IPEMSR-GKGVRLQSY-KDGGIS 698
                                   D+           +    R  +GVR     K   + 
Sbjct: 716 EVAVDEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVV 775

Query: 699 DVICFKICEGLT---------------------------WIDSAGRSYNRSENDLLGWLG 731
            +I  +  EG                              + +    Y +          
Sbjct: 776 SLIVAEPAEGQDEDADDADLAQEAEADAQTRTADDADAYILTATENGYGKRTPLGEYPRK 835

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RG  G +  +   R+GK + +
Sbjct: 836 GRGTQGVIGIQTSERNGKLVGA 857



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVV 664
           D+   +L  +  G        E     R  +  + + + E+    +  V+    D V ++
Sbjct: 810 DADAYILTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERNGKLVGAVLLSVKDEVLLI 869

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   L+     +I  + R  +GV L     G     +
Sbjct: 870 SDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAV 907


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 398/759 (52%), Gaps = 28/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G      
Sbjct: 1   MQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA RY
Sbjct: 61  HKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 181 PPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +   
Sbjct: 240 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ EV
Sbjct: 300 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q 
Sbjct: 359 VERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+ 
Sbjct: 419 QAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT                    E + + +SN+G+I+                +
Sbjct: 479 K-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
             +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+ 
Sbjct: 532 QGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLDD 591

Query: 599 NQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I T    D       L   +  G       S+       G   LK+   +++  V++
Sbjct: 592 GEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVLR 651

Query: 656 VTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    + 
Sbjct: 652 TSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVLV 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +     +           RGG G  V     R+GK   
Sbjct: 711 ISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 749



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 590 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D + 
Sbjct: 650 LRTSGEDEVIIGTHLGYSVRFKGAVV---RDMGRAAAGVKGVNLREGDYVVGTSRIDDSQ 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 707 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 766

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 767 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 804



 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 29/254 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 562 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 618

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 619 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM 678

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +        +  +L++S +G      A    +    G+ ++++
Sbjct: 679 GRAAAGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 739 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 798

Query: 652 ---LVVKVTGDHVA 662
              LV  V  D   
Sbjct: 799 TFALVDPVIEDEEV 812


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/758 (32%), Positives = 407/758 (53%), Gaps = 29/758 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +      R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T         +       + +G       SE     + G   + +   +++  V+
Sbjct: 592 GETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVL 651

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +   + V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +
Sbjct: 652 LIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGD-KVVGASRIVNGQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               + Y +           RGG G        ++G  
Sbjct: 711 IITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPL 748



 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +            + +G ++              L A++ KE D L 
Sbjct: 589 LDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     + +++ +  G +       + +       ++  ++L     +V A    +  
Sbjct: 649 NVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRG-VNLREGDKVVGASRIVNGQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG     E SE     R GK      +   +    +LV     + + V+ +  
Sbjct: 708 EVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLARLVTINGNEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++        + ++   + E
Sbjct: 768 VIIRTNVANISQTGRSTMGVKVMRL--DQEAKIVTVALVE 805



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINARKEDVANKYFFFTTQQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT+  E S               D+      + E E + +  +  G+        +R
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIG-TRTGYSVRFKVNAVR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+
Sbjct: 678 NMGRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      +    ++V++  G       + I    R   G   +++  E K
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 650 MKLVVKVTGD 659
           +  V  V  +
Sbjct: 798 IVTVALVEQE 807


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 398/760 (52%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT                    E + + +SN+G+I+                
Sbjct: 485 DK-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T    D       L   +  G       S+       G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    +
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +           RGG G  V     R+GK   
Sbjct: 717 VISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 597 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D + 
Sbjct: 657 LRTSGEDEVIIGTHLGYSVRFKGAVV---RDMGRAAAGVKGVNLREGDYVVGTSRIDDSQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 714 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 774 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 811



 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 29/254 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 569 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 625

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 626 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM 685

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +        +  +L++S +G      A    +    G+ ++++
Sbjct: 686 GRAAAGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 745

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 746 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 805

Query: 652 ---LVVKVTGDHVA 662
              LV  V  D   
Sbjct: 806 TFALVDPVIEDEEV 819


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/760 (31%), Positives = 403/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++++  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   +++NP+ +   L+E + GPDFPTG +++  R  I ++Y  G+G   
Sbjct: 181 PPHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY + K+++ E I  L   KRI  +  +RDES+     
Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G +P+++ L  I+  ++ H+++V
Sbjct: 300 FVIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 ITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T   +     +   + +IE+E + + +SN G+I+          K     +
Sbjct: 479 P------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L A  +        G  +  L+ L+ 
Sbjct: 532 QGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDD 591

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   L +   +++  V+
Sbjct: 592 GETIQTIINAKKEDILDKYFFFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVL 651

Query: 655 KVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G    ++   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTNGQEDIIIGTRSGYSVRFNEATIRGMGRSATGVRGVKLREEDWV-VGASRINDKQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 Y +  +        RGG G        ++G+   
Sbjct: 711 VITENGYGKRTSAAEYPTKGRGGKGIKTANITAKNGQLAG 750



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL+ KEGD L   L  +  + I++ +  G +   
Sbjct: 612 FFTTKQGIVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRF 671

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
               +   RG G +   +  + L     +V A   +   ++LV++  G       +E   
Sbjct: 672 NEATI---RGMGRSATGVRGVKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  ++ V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITAKNGQLAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        S ++ F + +
Sbjct: 789 VMRLDTD--SKIVTFTLVQ 805



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 81/251 (32%), Gaps = 29/251 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRAAKGL-PVINLLK--LDDGETIQTIINAKKEDILDKYFFFTTKQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT   E S               D+         +E I +  +  G+        IR
Sbjct: 619 IVKRTEVSEFSNIRQNGLRALNLKEGDELINVLLTNGQEDIIIG-TRSGYSVRFNEATIR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   +  +  +  +E D +  A   +    +L+++ +G      A    +    G+ I+
Sbjct: 678 GMGRSATGVRGVKLREEDWVVGASRINDKQEVLVITENGYGKRTSAAEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      D +  ++V+++KG       S I    R   G   +++ ++ K
Sbjct: 738 TANITAKNGQLAGLMTVDGSEDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSK 797

Query: 650 MKLVVKVTGDH 660
           +     V  + 
Sbjct: 798 IVTFTLVQAED 808


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D   +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 392/762 (51%), Gaps = 28/762 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY LI G GNFG++DGD  AA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  +L+ ++++ +D++  Y++ ++EP+V P++ P+LL NG SGIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+      L+ NP+ +   L++ I GPDFPTGG+I+  R  I+ +Y  G+G
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTEIP+ V K+ L++KIAEL   K I  +  +RDES   
Sbjct: 241 NVVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R     +++ ++F  + M+T F +NM  +  G     + L  +L+ +L H+
Sbjct: 301 GMRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPH-FLTLKQMLQYYLDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
            +V+ RR+ F +   + R  IL+GL IA  +IDEI+ IIRN    D  K  ++SRF L +
Sbjct: 360 EDVVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISRFELDD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +++ E  +LL +      +L   ++  + I  E+ ++++ 
Sbjct: 420 KQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F      G  R T    S    +   + +IEK+ + + +++ G+I+              
Sbjct: 480 F------GDDRRTEITASEV-VSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +  +  ++ D ++   ++ T D +L  +  GK Y+  A  +   S    G  I  L+ 
Sbjct: 533 RGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRIAKGLPIINLLQ 592

Query: 596 LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + I              L  ++  G        E       G   L +   +++  
Sbjct: 593 LDKGEKIQAMINVPEGHEEGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSN 652

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V+   G    ++G +      F    +  M R   GVR  + ++     +    +  G  
Sbjct: 653 VLTTDGKQNIIIGTHLGYAASFKESDVRVMGRSAAGVRGINLRENDYV-IGSEVLKPGAE 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +   Y +        +  RGG G L  K   ++G+   
Sbjct: 712 VLVISENGYGKRTAVSEYPIKGRGGKGILTTKVGKKNGRLAG 753



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +A +      +E     I+  G ++              L AL  ++GD L   L  
Sbjct: 597 EKIQAMINVPEGHEEGNLFFITKMGVVKRTSVEEFSNIRNSGLIALTLRDGDELSNVLTT 656

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                I++ +  G A +    ++         ++  I+L  N  ++ + V     ++LV+
Sbjct: 657 DGKQNIIIGTHLGYAASFKESDVRVMGRSAAGVRG-INLRENDYVIGSEVLKPGAEVLVI 715

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
           S  G       SE     R GK  L         ++  +  V G   + ++  +  ++ F
Sbjct: 716 SENGYGKRTAVSEYPIKGRGGKGILTTKVGKKNGRLAGMTVVDGTTDIMLITTDGIMIRF 775

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             + + +  R   GVRL    +G     +     +     DS  R  N    +
Sbjct: 776 KTEDVSQTGRATMGVRLIKLGEGDSVASLTAVPNDDD---DSEKRDENSKSEE 825


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/862 (31%), Positives = 404/862 (46%), Gaps = 133/862 (15%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V+L   + + YL YA+S I  RA+PD RDG KPVHRR++ AM+E+G      + K
Sbjct: 6   KEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGDQSVYD+LVR+AQPF  RY L+ GQGNFG++DGDSAAA RYTEA
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   ++  +D++ VDF+  Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 126 RMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +ALIDNP+I ++ L+EYI GPDFPT GI V     I+  YR GRG  R+RA
Sbjct: 186 NLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVVTEIPYQV K+RLIEKIAEL+  K++  + ++RDES +D   +  
Sbjct: 245 RAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++ +++  + ME+ F +NM  L  G  PQ++ L  +L+ ++ HRREV+ R
Sbjct: 305 EVKRGEAADVVLNNLYQQTQMESVFGINMVALVDG-RPQLLNLKQLLEAFVRHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420
           R+ F ++    R  IL+GL +A  NIDE+I +I+    P                     
Sbjct: 364 RTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALL 423

Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                  + LTE Q   IL +RL  L  LE+ ++  E   LL  
Sbjct: 424 SAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLEA 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L +       I  E+  ++E +  +      R T    S  D   L   +I  
Sbjct: 484 ISGLIRILENPDVLLEVIREELVSIREEYGDA------RRTEIRHSEEDLDIL--DLIAP 535

Query: 518 EPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+ +     +           SA   KE D +      +T D +L  ++ 
Sbjct: 536 EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSS 595

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK + LP   L        G  +   I L   + +        Y     +   + KG   
Sbjct: 596 GKVFWLPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYADGHYVFFATRKGMVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSI-------- 675
               SE     ++GK  + +   + +  V    G+  V +   N K + FS         
Sbjct: 656 KTPLSEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEAD 715

Query: 676 ------------------------DQ-----------IPEMSR-GKGVRLQSY-KDGGIS 698
                                   D+           +    R  +GVR     K   + 
Sbjct: 716 EVAVDEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVV 775

Query: 699 DVICFKICEGLT---------------------------WIDSAGRSYNRSENDLLGWLG 731
            +I  +  EG                              + +    Y +          
Sbjct: 776 SLIVAEPAEGQDEDADDADLAQEAEADAQTRTADDADAYILTATENGYGKRTPLGEYPRK 835

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RG  G +  +   R+GK + +
Sbjct: 836 GRGTQGVIGIQTSERNGKLVGA 857



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVV 664
           D+   +L  +  G        E     R  +  + + + E+    +  V+    D V ++
Sbjct: 810 DADAYILTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERNGKLVGAVLLSVKDEVLLI 869

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   L+     +I  + R  +GV L     G     +
Sbjct: 870 SDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAV 907


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/755 (35%), Positives = 449/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT I   
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/769 (30%), Positives = 406/769 (52%), Gaps = 35/769 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      + +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M ++GL 
Sbjct: 4   DLENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGLA 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGNFG+IDGD  A
Sbjct: 64  NNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFPA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG SGIAVGM
Sbjct: 124 AMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E   A +A ID+ +I I +L++++  PDFPTG I +     + E++  GR
Sbjct: 184 ATNMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAI-IYGYTGVQEAFETGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA+  +E   +    I+VTEIPYQV K+ +IE+ AELI  K+I  + +I+DES +
Sbjct: 243 GRIVMRAKAEIE-TNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESNK 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +++   R  +  +++ ++F  + ++T F +N   L  G  PQ++ L  +++ ++ H
Sbjct: 302 DGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNG-RPQLLNLKDLIRHFVDH 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLT 424
           R +V+ RR+ F +    +R  IL+GLLIA  ++DE+I +IR  + P+      + +F L+
Sbjct: 361 RHDVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQFGLS 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++ LR L  LE  +IK E + L+   E + S+L+S + +   I  E+ E+KE
Sbjct: 421 DIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDSKELRMQIIKDELNEMKE 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRTT    +        +  IE E + + IS+ G+I+   +         
Sbjct: 481 KYGDE-----RRTTIVHSAE---DMSMEDFIEDEDVVITISHEGYIKRTPATEYRTQGRG 532

Query: 545 F--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLI 594
                    +  D ++  L A   + +L  +  G+ + L    +  G     G AIQ +I
Sbjct: 533 GKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPEGSRLSKGRAIQNII 592

Query: 595 DLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++   + I             Y     +++ + KG                G   + ++ 
Sbjct: 593 NIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININE 652

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++      TG   + +   + + + F+ +++  M R   GVR  +        V    
Sbjct: 653 GDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAHDQDEVVGMIA 712

Query: 705 ICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +  +T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 713 VDDPNVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTEKTGALVA 761



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ + +G I+     +        ++A++  EGD L  A     +  I++    G
Sbjct: 616 ENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSG 675

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +   +   ++V     D     +LVVS KG     +  
Sbjct: 676 RAIRFNEEKVRPMGRTATGVRGVTLAHDQDEVVGMIAVDDPNVTVLVVSEKGYGKRTDIE 735

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    +     +   + +      D + ++ ++  ++   + ++  M R  
Sbjct: 736 DYRVTNRGGKGVKTISVTEKTGALVAIKNVTDADDLMIINKSGIVIRIVVSELRVMGRAT 795

Query: 686 -GVRLQSYK 693
            GVRL + K
Sbjct: 796 QGVRLINLK 804


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P + PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGMAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/775 (30%), Positives = 393/775 (50%), Gaps = 41/775 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++  +V   V+ V L   ++  YL YA+S I  RA+PD RDG KPVHRR+++AM + G  
Sbjct: 14  DAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMYDGGYR 73

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + K +R+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPLI GQGNFG+   D AA
Sbjct: 74  PDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGSAGNDGAA 133

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE +M  ++  +++ ++ED VDF+D Y+  + EPV  P++FPNLL NG++GIAVGM
Sbjct: 134 APRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGSAGIAVGM 193

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+   A  L+ +P+ + ++    LL  I GPDFP G  I+  R+ I ++Y
Sbjct: 194 ATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATIL-GRKGIEDAY 252

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG    RA   VEE+ +G  C+VVTE+PY V    L  KIA  +   ++  + D+RD
Sbjct: 253 RTGRGSITQRAVVEVEEI-QGRTCLVVTELPYMVNPDTLANKIASYVKDGKVAGIADLRD 311

Query: 304 ESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES+    + ++    R     +++ +++  + ++  F  NM  L    VP+ + +D  L+
Sbjct: 312 ESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDN-VPRTLSIDAFLR 370

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            W+ H+ +V+ RR+ FR++  + R  IL+G L A   +DE+IA+IR   + D+ +  ++ 
Sbjct: 371 LWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDEARTGLME 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL+L+LR L  LE  +I+ E   +    +  + +L +  +Q   ++ E+
Sbjct: 431 LLDVDEIQANAILDLQLRRLAALERLKIEEEAQKIEELIKDYNEILATPARQREIVSEEL 490

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IR 531
             V + +        RRT     +  D     + +I +E + V I+  G+         R
Sbjct: 491 DAVVQRYGD-----DRRTKIL--AGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQSALYR 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
           +       ++    +  D ++      T + +L  +  G+ Y   A  L  G     G+ 
Sbjct: 544 AQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGMRDAKGQH 603

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+ L  +++I        YD+   L++ +  G       SE  +N   G   + +  
Sbjct: 604 VANLLALQPDEEIAEVLSIPDYDAAQYLMLATKSGLVKKTRLSEYDSNRTGGVIAINLRE 663

Query: 647 E-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
                 +++     V   DH+ +V      + F+ D   I    R   GV    +K G  
Sbjct: 664 MADGKSDELVSARLVDAEDHLLLVSRKGMSIRFAADDSTIRPTGRATSGVTGMKFK-GED 722

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +    +  G          + +        L  RGG G  V K   + G  + 
Sbjct: 723 TLLTMDVVTPGTYVFVVTEAGFAKRTPVEEYRLQGRGGFGIKVAKITEQRGDLVG 777



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFKE-----GDSLKIALHAHTTDRILLLSTDGKAY 573
           +  G ++  +    D +      A++ +E      D L  A      D +LL+S  G + 
Sbjct: 635 TKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRKGMSI 694

Query: 574 TLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
              A +     +GR    +    +       ++T  V      + VV+  G A      E
Sbjct: 695 RFAADDSTIRPTGRA--TSGVTGMKFKGEDTLLTMDVVTPGTYVFVVTEAGFAKRTPVEE 752

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G      K++    + +  ++   GD V VV E  K++   ID++P   R   
Sbjct: 753 YRLQGRGGFGIKVAKITEQRGDLVGGLIVSEGDDVFVVMEMGKVVRSKIDEVPAKGRNTM 812

Query: 686 GVRLQSYKDGGISDVICFK 704
           GV     K G    +I   
Sbjct: 813 GVVF--AKPGKKDRIIAVT 829


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 449/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 64  ASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADAD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT I   
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/763 (34%), Positives = 424/763 (55%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+    V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLLEDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+   SEP V PS+ PNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +IDN   +++ +LE + GPDFPTGGI +  +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGI-IYGKMGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA+  +E+  +    IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  + 
Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  ++    P++  L  +L+ ++AHR+
Sbjct: 300 IRVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKE-PKIFNLLELLQIFIAHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            ++ RRS F ++    R  IL+GL+IA  NIDEII IIR     ++ K  +V +FSL+E 
Sbjct: 359 TIIIRRSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSEL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I +E   L  +   ++S+L S ++  + +  E+ E+KE F
Sbjct: 419 QAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       +R T  E      +   + +I  E + V +S+RG+++               
Sbjct: 479 S------SKRKTQIE--EDYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
              + +  E D ++    A+T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL- 652
           + ++ I+       ++    L+  +  G        E       G   + +   +++   
Sbjct: 591 SPDEKIMATITTTDFNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTA 650

Query: 653 -VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGL 709
            +V  +   + +  +    + F ID++ E+ R G+GV    +K      +    I  +  
Sbjct: 651 HIVGSSVKELFIATQQGMCIRFGIDELREIGRVGRGVTGIKFKASEDCVIAATTITSDTD 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +   +        L  R G G +V K  P++GK +S
Sbjct: 711 KLLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTPKTGKLVS 753



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 14/211 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDS-LKIA 554
                 AT+       +   V  +  G ++           SV + A++  E D  +   
Sbjct: 592 PDEKIMATITTTDFNDDKSLVFFTKNGIVKRTNLKEYSNIRSVGVRAINLDENDELVTAH 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK 613
           +   +   + + +  G         L      G  +  +    + +  I    +   T K
Sbjct: 652 IVGSSVKELFIATQQGMCIRFGIDELREIGRVGRGVTGIKFKASEDCVIAATTITSDTDK 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS +G        E    +R GK  + +    K   +  VV +  +   + V+  + 
Sbjct: 712 LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTPKTGKLVSVVNINDENMDLMVLTSSG 771

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
           K++    + I E  R   GV++ +  +  ++
Sbjct: 772 KMIRVDTEAIREAGRNTSGVKIVNVGNDKVA 802


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/760 (38%), Positives = 453/760 (59%), Gaps = 26/760 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L EE+ ++VSLR   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+G
Sbjct: 1   MSDMPMLPEED-ESVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  
Sbjct: 60  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+ +L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 120 SFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P+ ++++L E+I  PDFPT   I+  R+ I   YR
Sbjct: 180 VGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIKAFYR 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+V  +P+QV  ++++E+IA  + AK++PL+ D+RDE
Sbjct: 240 SGRGSIKMRAHWRKED-----GAIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVNDLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D D LM  +F  +D+E  + +N+N++     P V  LD IL+
Sbjct: 295 SDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLDAILR 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R++ + +R+ +L+G LIAYLNIDE+I IIR EDKPKPV++ RF 
Sbjct: 355 EWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPVLMQRFG 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +A+L L+LR+L KLEE +I+ E D L  E+E+++  L S  +    I  E+  V
Sbjct: 415 LSDAQAEAVLELKLRNLAKLEEMKIRGEQDELEKEREQLELTLGSTARMRTLIKKELLAV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F      G  R++        KA  ++ ++  EPITVV+S +GWIR+ K H +D ++
Sbjct: 475 AEQF------GDERSSPLVAREEAKAFSEKELMSTEPITVVLSEKGWIRAAKGHDIDPTS 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+  +A    +    +L+ + G+AYTLP  NL S RG GE +   I        
Sbjct: 529 LSYKAGDNFNLAAAGRSNQSAILIDSTGRAYTLPTHNLPSARGQGEPVTGRISPPPGVGF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
               + D   K+L+ S  G  F+ E   ++A  + GK  L + +  ++    +V  GD  
Sbjct: 589 KALLLGDERQKILLASDAGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDL 648

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWI 712
            VA V    +LL+F +  +PE++RGKG ++          ++  +  +      E    +
Sbjct: 649 LVAAVSTEGRLLVFPLADLPELARGKGNKILSVPSARVKSREEMVKGIAVLT-QESRLVL 707

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  R      ++L  + G+RG  GS +P+G       ++
Sbjct: 708 HAGKRHLTLKVSELDHYRGERGRRGSKLPRGLQNVDYLVA 747


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 400/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K
Sbjct: 8   DKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+YD+LV+LAQ +  RYPL+ G GNFG+ DGD AAA RYTEA
Sbjct: 68  CARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP H
Sbjct: 128 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      E SI+++++ I GPDFP G  I+  R  I E+YR GRG 
Sbjct: 188 NLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHR-GIKEAYRTGRGK 246

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   IVVTE+PY V K+ LI+KI EL+  KR+  + D+RDES+ + 
Sbjct: 247 IKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDESSREG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  + ++L+  ++  + ++  F +NM  L  G VP+++ +  +L  +L H+ 
Sbjct: 307 IRVVIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDG-VPKILNISQMLGYYLKHQE 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  ILKGLLIA  NIDE+I IIR+       K  ++ RF LTE 
Sbjct: 366 DVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIERFGLTEI 425

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+ +   + ++L   K+    I  E+  + + +
Sbjct: 426 QAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAILADEKKLLGVIKDELLVISQKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                    R               + +IE+E I + ++  G+I+               
Sbjct: 486 GDERRTALGRDV--------DEVTDEELIERENIVITMTKLGYIKRMPEDIFKAQNRGGK 537

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  +   T + ++  +  G+ Y L    +        G AI  L+ L
Sbjct: 538 GIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLKGYEIPEAGRTARGVAIVNLLQL 597

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L + +  G     + SE     + G T + +   +++  V
Sbjct: 598 QAGEKITAVIPLKSYEDGKYLFMATRNGMVKKTDISEYQNVRKTGLTAIVLRDNDELIEV 657

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
               G D + ++ +    + F+   + +  R   GV+      G    VI  ++  +G  
Sbjct: 658 KATNGEDDIFLITKKGMTIRFNEKNVRQTGRTSMGVKGIHL--GKDDIVISMQMSSQGEK 715

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +        +  RGG G    K   ++G  + +
Sbjct: 716 ILLVTENGMGKRTLISEFNVQNRGGKGVKCYKITDKTGDLVGA 758



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     E      + +  G ++              L+A+  ++ D L   
Sbjct: 598 QAGEKITAVIPLKSYEDGKYLFMATRNGMVKKTDISEYQNVRKTGLTAIVLRDNDELIEV 657

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +  D I L++  G        N+         ++  I L  +  +++  +     K+
Sbjct: 658 KATNGEDDIFLITKKGMTIRFNEKNVRQTGRTSMGVKG-IHLGKDDIVISMQMSSQGEKI 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           L+V+  G       SE     R GK      +   + + +   +    + + ++     +
Sbjct: 717 LLVTENGMGKRTLISEFNVQNRGGKGVKCYKITDKTGDLVGAKIVTDENDIMIITTEGII 776

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  S + I  + R   GV++ +        V      +
Sbjct: 777 IRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQ 814


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/772 (31%), Positives = 398/772 (51%), Gaps = 37/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ ++++ VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L++NP+I+ E L++ I GPDFPTGG+++  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+++ F      G  R T  +V        +  +  +E I V +++ G+I+      
Sbjct: 472 ELMEIQKRF------GDERRTELQVGDITNIEDEDLIE-EEDIIVALTHNGYIKRLPVDE 524

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D ++  + + T D +L  +  GK Y++    +        G
Sbjct: 525 FKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             I  L+ +N+ + I           D    L   +  G       +E       G   L
Sbjct: 585 IPIINLLGINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKAL 644

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +   +++  V  ++ D   ++G  N   L F    +  M R   GVR    +D     +
Sbjct: 645 NLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-I 703

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      +  +   + +        +  RGG+G        ++G  + 
Sbjct: 704 GAAPLNSDSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKNGPLVG 755



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 12/206 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
             +     + +      +  G ++           S  L AL+  E D L          
Sbjct: 603 INVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQ 662

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G A +  +  + S       ++  I L     ++ A   +S  K+LV+S  G
Sbjct: 663 PMIIGTHNGYALSFKSSVVRSMGRSAAGVRG-IRLRDEDYVIGAAPLNSDSKVLVISENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  SE     R G     V+       +  +  V GD  + +V +   ++ F I+ 
Sbjct: 722 FGKQTPASEYPIKGRGGLGVKTVNVTVKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIES 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVIC 702
           + +  R   GV L    +G     I 
Sbjct: 782 VSQTGRSAVGVHLIKMDNGARVATIA 807



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIA 554
              D+    + + E +P+ +  ++ G+        +RS+   +  +  +  ++ D +  A
Sbjct: 647 HENDELIDVEVISEDQPMIIG-THNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYVIGA 705

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              ++  ++L++S +G     PA         G  ++ +     N  +V     +    +
Sbjct: 706 APLNSDSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKNGPLVGLTTVNGDEDI 765

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           ++V+ +G         +    R   G   +K+ +  ++  + KV
Sbjct: 766 MLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV 809


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/801 (32%), Positives = 415/801 (51%), Gaps = 64/801 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+        +  V++   L++ YL Y++S I  RA+PD+RDG KPVHRR++ AMSE+ 
Sbjct: 1   MSDLTNAPSNQILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  ++KKSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDS
Sbjct: 61  NDWNKSYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +++  IL  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEIRMRKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  A LALIDNP+I+I++L+E I GPDFPT  I +  R  IV++YR 
Sbjct: 181 GMATNIPPHNLNEVVTACLALIDNPDITIDELIEIIPGPDFPTAAI-INGRAGIVQAYRT 239

Query: 246 GRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           G+G   +R+R  VE   + G   I+++E+PYQV K+RLIEKIAEL+  K+I  + ++RDE
Sbjct: 240 GKGRIYIRSRAVVETNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    R    ++ + +++  + +E  F +N+  L  G+ P+++ L  +L+ +
Sbjct: 300 SDKDGLRVVIEMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQ-PRLLNLKQLLEYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV----- 416
           + HRREV+ RR+ + ++    R  +L+GL +A  NID +I +I++ D   + K       
Sbjct: 359 VRHRREVVTRRTVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQG 418

Query: 417 -----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                        +  ++ L+  QV AIL++RL+ L  LE  ++
Sbjct: 419 WELGDVSQMLARAGESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHEKL 478

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E    L E  +  S+L    +    I  E+  +   +        RR+   E +R   
Sbjct: 479 LKEYQEKLEEIAEYLSILGDAVKLMTVIREELDAIVNEYGDE-----RRSEIIESTR--- 530

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E   V IS+ G+ ++         +   +  SA   K+ D ++  + A T
Sbjct: 531 DLTAEDLITEEDRVVTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIAST 590

Query: 560 TDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S  GK Y L   ++   S    G  +  L+ L  ++ I +      Y     +
Sbjct: 591 HDTILCFSNVGKVYWLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGHYI 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            + ++ G     E +        G   L++   + +       G   V +   + K + F
Sbjct: 651 FMATANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRF 710

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           + + +  M R  KGVR     DG    +      +G   +  +   Y +           
Sbjct: 711 NENDVRAMGRTAKGVRGIRMADGQ-KMISLLVPKDGGRMLSVSENGYGKRSEFAEFATKG 769

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G +  +   R+G+ + +
Sbjct: 770 RGNKGMIFMQASERNGEIIGA 790



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 13/219 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALH 556
                + L      +     + +  G ++        +  SV L AL  +EGD L     
Sbjct: 632 DERITSILPVKEYTEGHYIFMATANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAV 691

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            + T  ++L S+ GKA      ++ +     + ++  I +   Q +++  V     ++L 
Sbjct: 692 TNGTCDVMLFSSSGKAVRFNENDVRAMGRTAKGVRG-IRMADGQKMISLLVPKDGGRMLS 750

Query: 617 VSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLI 672
           VS  G     E +E     R  KG  F++ S    E +  V    GD + ++ +   ++ 
Sbjct: 751 VSENGYGKRSEFAEFATKGRGNKGMIFMQASERNGEIIGAVQVFDGDELMMISDQGTMVR 810

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
              D+I  + R  +GVR+   K+G  +  V   +  E +
Sbjct: 811 TRTDEISVLGRNTQGVRVIRLKEGEHVVGVERIEEPEEI 849


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/786 (33%), Positives = 412/786 (52%), Gaps = 60/786 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++++   L++ YLAYA+S I  RA+PD RDG KPVHRR++ AM+E+G D+    KKSA
Sbjct: 9   ITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKKSA 68

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD ++YD++VR+AQ F  R  LI GQGNFG++DGDSAA+ RYTE RM
Sbjct: 69  RVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEIRM 128

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  + ++ VDF   Y+E +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 129 SKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNL 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A +AL+++ E+SIE+L+ +I GPDFPT G+ +  ++ I+E+Y  GRG   VRAR 
Sbjct: 189 AEVIDACVALLNDSELSIERLMHFIKGPDFPTAGL-IYGKQGIIEAYHTGRGRLFVRARV 247

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E+  +     I+VTE+PYQV K++LIEKIAEL+  KRI  +  +RDES +D   V+  
Sbjct: 248 QIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D+L+ ++F  + ++  F +NM  L  G  P ++ L  ++ E+LAHRREV+ RR
Sbjct: 308 VKRGENVDVLLNNLFSQTQLQVTFGINMVALVDG-RPVLLNLKQLISEFLAHRREVVTRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + F ++    R  +L+GL IA  NID +I +I+    P                      
Sbjct: 367 TIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLT 426

Query: 420 -----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+  Q  AIL+LRL  L  LE+ +I  E    L     + 
Sbjct: 427 KTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLL 486

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +LN  ++    I  E+  +KE F        RRT   E+   D    ++ +I  E + V
Sbjct: 487 DILNQPERLCRVIQEELIAIKEEFLDP-----RRT---EIITVDAEINEEDLIPAEDVVV 538

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S+ G+++          +      S+   KE D ++  L A+T   +L  S+ GK Y 
Sbjct: 539 TLSHEGYVKRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYW 598

Query: 575 LPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    L  G     G  I  L+ L  N+ I        Y +   + + + KG        
Sbjct: 599 LKVYKLPEGSRIAKGRPIINLLALGENERITAVLPIQNYSAEHFIFMATMKGTTKKTSLI 658

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
           +       G   + +   +++  V    G   V +  +  K++ F+   +  M R   GV
Sbjct: 659 DFSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCMGRTACGV 718

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R    ++G     +      GL  + +    Y +        L  RGG G +  K   R+
Sbjct: 719 RGIKLQEGQRVISLIIAKPYGL-ILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARN 777

Query: 748 GKFLSS 753
           G+ +++
Sbjct: 778 GQVVAA 783



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 12/204 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L       E    + + +G  +        +     + A+  ++ D L     
Sbjct: 625 NERITAVLPIQNYSAEHFIFMATMKGTTKKTSLIDFSRPRHDGIIAIDLRDHDRLVGVAL 684

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 +LL +  GK       N+         ++  I L   Q +++  +      +L 
Sbjct: 685 TDGQQDVLLFTDAGKVIRFNESNVRCMGRTACGVRG-IKLQEGQRVISLIIAKPYGLILT 743

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLI 672
            +  G        +    +R G   + +     + + +  V  +  D V ++     L+ 
Sbjct: 744 ATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARNGQVVAAVQVLPSDEVMLITNKATLVR 803

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDG 695
             + +I   SR  +GVRL    +G
Sbjct: 804 TRVAEIRVASRHSQGVRLIRLNEG 827


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/778 (30%), Positives = 396/778 (50%), Gaps = 39/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D     N    + V+ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDTTGGENLF--DRVEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSA+ V + +G  HPHGD ++Y +LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MYDNGYRPERGYVKSAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RMT +A  +++ + E+ VDF+  Y+ +  EPV+ PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A   L+DN       ++E  ++ + GPDFPT G+IV  +
Sbjct: 179 GGIAVGMATNIPPHNLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDK 238

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG  R+R    +EE G     IV+TE+PYQV    L+  IAE +   +I 
Sbjct: 239 -GIQDAYRTGRGSIRMRGVTSIEEEGN-RQVIVITELPYQVNPDNLVHNIAEQVRDGKIA 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +  G VP+ +
Sbjct: 297 GIARIDDESSDRVGLRIVVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L+ ++ H+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 356 RLDQMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDI 415

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q +AIL ++LR L  LE  +I   L  +      +  +L   ++Q 
Sbjct: 416 AREGLIDLLDIDEIQANAILEMQLRRLAALERQKIIDALAEIEETIADLKDILARPERQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
           + +  E+ E+ E F        RRT     S       ++ +I +E + V I++ G+   
Sbjct: 476 DIVRGELEEIVEKFGDE-----RRTKIVAASG---DVSEEDLIARENVVVTITSTGYAKR 527

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
                 RS +     +     K+ D ++      T D IL  +  G+ Y L A  L   S
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAS 587

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        Y+    L++ +S G       ++  +    G 
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATSHGRVKKSRLTDYDSPRSGGL 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +++      T  D + +V E  + + F+ D   +  M R   GV+   +++ 
Sbjct: 648 IAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVLRPMGRATAGVKGMRFRED 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +   ++ ++G  Y +           RGG+G +  K   + GK + +
Sbjct: 708 DQLLALTVVQEDAYLFVATSG-GYGKRTKMEEYPAKGRGGLGVVTFKYDKKRGKLIGA 764



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 14/216 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ ++ G ++  +    D      L A++  EGD L  A
Sbjct: 602 QPGEQIAQVIQIQSYEDAPYLVLATSHGRVKKSRLTDYDSPRSGGLIAINLNEGDRLVGA 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAG-NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 D +LL+S +G+A    A   +L   G   A    +    +  ++   V      
Sbjct: 662 QLCTAEDDLLLVSEEGQAMRFTADDEVLRPMGRATAGVKGMRFREDDQLLALTVVQEDAY 721

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKV-TGDHVAVVGENRK 669
           L V +S G     +  E  A  R G   +    +    K+   + V   D +  +     
Sbjct: 722 LFVATSGGYGKRTKMEEYPAKGRGGLGVVTFKYDKKRGKLIGALTVQEDDEILAITSAGG 781

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++   ++QI   SR   GVRL     G   +++   
Sbjct: 782 VIRTEVNQIRHTSRATMGVRLVDL--GKDVELVAVD 815


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/770 (32%), Positives = 403/770 (52%), Gaps = 39/770 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  +   +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  
Sbjct: 178 GMATNIPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVM-GKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRVSIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            H+REV+ RR++F +Q    R  IL+GL IA  +IDEII+IIR+    ++ K  ++  + 
Sbjct: 356 IHQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLIDGYL 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKDILAHEERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F  +      R T  +V        +  +  +E + V ++  G+I+           
Sbjct: 476 QTKFGDA------RRTELQVGDVTNLEDEDLIE-EEDVIVTLTRNGYIKRVPQAEFKAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  ++  + D +   +   T D +L  +  GK Y +    +     +  G  +  
Sbjct: 529 RGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+    ++ I T         +S   L  V+  G       SE       G   L +  +
Sbjct: 589 LLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVVKRTAVSEFSNIRTNGLKALTLRDD 648

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---SDVIC 702
           +++  V    G   + +  ++   + F+ + +  M R   GVR    +DG +   SDV+ 
Sbjct: 649 DEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIMGRAAAGVRGIRLRDGDLVIGSDVVS 708

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    +    + Y +        +  RGG G        ++G    
Sbjct: 709 LNDN----VLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGTLAG 754



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 16/226 (7%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              E +     ++  G ++              L AL  ++ D +        T  I++ 
Sbjct: 607 EAGESKDYLFFVTRLGVVKRTAVSEFSNIRTNGLKALTLRDDDEVLSVQITDGTQSIMIA 666

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + DG  Y++        R  G A   +  I L     ++ + V      +LV++ KG   
Sbjct: 667 TKDG--YSVRFTE-EDVRIMGRAAAGVRGIRLRDGDLVIGSDVVSLNDNVLVITEKGYGK 723

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
               SE     R GK     +  EK   +  ++ V GD  + V      ++ F+ + + +
Sbjct: 724 QTPVSEYPIKGRGGKGIKTANITEKNGTLAGMIIVHGDEDIMVTTTQGVMIRFTTESVSQ 783

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             R   GVRL   +DG     +     E    +D+       +  D
Sbjct: 784 TGRATLGVRLIRLEDGAKVATLAKVEHEESLVVDAKEDVSRETPLD 829


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 416/763 (54%), Gaps = 31/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++L+E+N   V +  +++E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+ L   
Sbjct: 2   DSLIEDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPR 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD AAA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT  +E +L+ +D+D V+F   Y+    EP V P++FPNLL NG+SGIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIP H + EI +A + +ID     +E LL+ + GPDFPTGGI +  +  I+E+YR GRG 
Sbjct: 182 SIPPHRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGI-IYGKAGILEAYRTGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA+  +E+  +    IV+ E+PYQV K++L+E+I+EL   K I  + ++RDES  + 
Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  ++    P++  L  +L+ ++AHR+
Sbjct: 300 IRVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKE-PKIFNLLELLQIFIAHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            ++ RRS F ++    R  IL+GL+IA  NIDE+I  IR     D+ K  +VS+F L+E 
Sbjct: 359 TIIIRRSIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSKFKLSEL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL +RL+ L  LE  +I  E   L A+   ++S+L S  +  + +  E+ E+KE F
Sbjct: 419 QAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLKSIVKEELLEIKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
           S       +R T  E      A   + +I  E + V +S+RG+++               
Sbjct: 479 ST------KRRTQIE--EDYDAIDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGK 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
              + +  + D ++    A+T D I+ ++  G+ Y L    +        G+A+  LI+L
Sbjct: 531 GKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    L+  +  G        E       G   + +   +++   
Sbjct: 591 QADEKIMATITTTDFNEDKSLVFFTKNGVVKRTNLKEYGNIRSIGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGL 709
             V      + +       + F ++++ E+ R  +GV    +K      +    I  +  
Sbjct: 651 HIVDSHIKELFIATYQGMCIRFGVEELREIGRVSRGVTGIKFKASEDCVIAATTIANDTD 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + R   +        L  R G G +V K  PR+GK +S
Sbjct: 711 KLLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPRTGKLVS 753



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 14/212 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      AT+      ++   V  +  G ++              + A++  E D L  A
Sbjct: 591 QADEKIMATITTTDFNEDKSLVFFTKNGVVKRTNLKEYGNIRSIGVRAINLDENDELVTA 650

Query: 555 LHAHTTDRILLLST-DGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTC 612
               +  + L ++T  G         L         +  +    + +  I    + + T 
Sbjct: 651 HIVDSHIKELFIATYQGMCIRFGVEELREIGRVSRGVTGIKFKASEDCVIAATTIANDTD 710

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGEN 667
           KLL VS +G        E    +R GK  + +    +   +  VV +  +   + V+  +
Sbjct: 711 KLLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPRTGKLVSVVNINDENMDLMVLTSS 770

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            K++    + I +  R   GV++ +  D  ++
Sbjct: 771 GKMIRVDTEAIRKAGRNTSGVKIVNVGDDKVA 802


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 440/750 (58%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  AA+ LI+ P+ S+++LL+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWNKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++K+ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDKLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     +A  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-ARAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   + +  D   +  +   
Sbjct: 590 DDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLVIENDSDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P +S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPALSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  GS + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGS-LMRGLQRIDRI 737


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +   L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTLAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIQDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 85/250 (34%), Gaps = 27/250 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDH 660
                V  + 
Sbjct: 799 VTFTLVQPED 808


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 393/762 (51%), Gaps = 37/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++++M+E+        +K
Sbjct: 7   DKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG+IDGD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  + +D VDF   ++E + EP V PS+FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 RLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +IDN      + S+E++L+ I GPDFPTG  I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E    G   I+VTE+PY V K+RLIEKIAEL+  K+I  +  I DES  + 
Sbjct: 246 IRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++L+  +   + ++  F + M  L     P+V+ +  +L+ +L H++
Sbjct: 306 IRINIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNE-PKVLNILQMLEYYLDHQK 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+ + +   + R  IL+GLL A  +IDE+I IIR      + K V++ RF LT+ 
Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMERFELTDP 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L A+  ++ ++L    +    I  EI  + E +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAILADENKLLGVIKKEILVISEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        +     + +I  +   + ++N G+I+               
Sbjct: 485 GD-----DRRTKI----GFEDDMSVEDLISDDDTVIAMTNLGYIKRMSVDNFKSQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   + D ++  L       I+  +  G+ Y + A  +        G AI  L+ L
Sbjct: 536 GIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEAGRTARGTAIVNLLQL 595

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +  A      D    L + +  G        E     + G   + +   +++  V
Sbjct: 596 QPGEKVTAAIPMREIDDDKYLFMATKGGMVKKTRMCEYSNMRKTGLQAILLREGDELIEV 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLT 710
                 + + +  +    + F         R   GV      +G   +VI  ++  +G  
Sbjct: 656 KVTDNTEDIFLATKFGMSIRFKETDARITGRVSYGVIGMKLDEG--DEVIGMQMASQGEY 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++ + Y +        L  RGG G L      ++G  + 
Sbjct: 714 MLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTEKTGNLVG 755



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 22/240 (9%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-- 535
           + +         R T        +      A +    I+ +    + +  G ++  +   
Sbjct: 573 KAYEIPEAGRTARGTAIVNLLQLQPGEKVTAAIPMREIDDDKYLFMATKGGMVKKTRMCE 632

Query: 536 ----HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L A+  +EGD L        T+ I L +  G +           R  G    
Sbjct: 633 YSNMRKTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKE---TDARITGRVSY 689

Query: 592 LLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE 647
            +I   L+   +++   +      +LV S KG       SE     R GK  L   V+ +
Sbjct: 690 GVIGMKLDEGDEVIGMQMASQGEYMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTEK 749

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
               + +K+  D   + ++     L+   +D I  + R   GV+L S        V    
Sbjct: 750 TGNLVGMKLLDDGRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIA 809


>gi|332668539|ref|YP_004451546.1| DNA gyrase subunit A [Cellulomonas fimi ATCC 484]
 gi|332337576|gb|AEE44159.1| DNA gyrase, A subunit [Cellulomonas fimi ATCC 484]
          Length = 870

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/780 (30%), Positives = 404/780 (51%), Gaps = 43/780 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +   +E   ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + 
Sbjct: 1   MTETPDQIEHGRIEQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D
Sbjct: 61  GYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE +M  ++  +++ +DED VDF D Y+    EP+V P++FPNLL NG++GIA
Sbjct: 121 PAAAPRYTECKMAPLSMEMVRDIDEDTVDFGDNYDGRTQEPLVLPARFPNLLVNGSAGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ +     +D+PE + E+    LL  I GPDFPTG  I+  R  I 
Sbjct: 181 VGMATNIPPHNLREVADGVQWYLDHPEATKEELLAALLTRIKGPDFPTGATILGHR-GID 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + D
Sbjct: 240 EAYRTGRGSITMRAVVNVEEI-QGRICLVVTELPYQVNPDTLAKKIADLVKENRVTGIAD 298

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ + +D 
Sbjct: 299 IRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
            ++ W AH+ EV+ RR+ +R++  + ++ I +G L A   +DE+IA+IR   + D+ +  
Sbjct: 358 FVRHWTAHQLEVIQRRTRYRLRKAEEQIHIYRGYLKALDALDEVIALIRRSPDADEARTG 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q +AILNL+LR L  L+  +I    D L A+  + +++L S ++Q   ++
Sbjct: 418 LMELLGVDEVQANAILNLQLRRLAALQRQEITQRHDELQAQIVEFNAILASDERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+RE+ + +        RRTT       D     + +I +E + V I+  G+       
Sbjct: 478 DELREIVDKYGDE-----RRTTIL---PFDGEVSVEDLIAEEEMVVTITRGGYAKRTRSD 529

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
             R+ +     +     +E D +       T   +L  +  G+ Y   A  L  G     
Sbjct: 530 NYRAQRRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAK 589

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+     + I        Y+    L++ + +G       +E  +N   G   + 
Sbjct: 590 GQHVANLLAFQPGETIAQVLDVRNYEQAEHLVLATQRGLVKKTRLTEYDSNRSGGVIAIN 649

Query: 644 VSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK- 693
           +  +     +++     V  D  + +V    + + F+     +  M R   GV    ++ 
Sbjct: 650 LREDEEGRPDELVSARLVNSDQDLILVSRKGQSVRFTASDESLRPMGRATSGVTGMKFRG 709

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           D  +  +   +    L  +   G +   +          RGG+G  V      +G  + +
Sbjct: 710 DDELLAMDVVREDAFLFTVTEGGIAKRTALTVENYRQQGRGGLGIKVANLPEANGDLVGA 769



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 23/202 (11%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRILLLSTDG 570
           V+ + RG ++  +    D +      A++ +E      D L  A   ++   ++L+S  G
Sbjct: 621 VLATQRGLVKKTRLTEYDSNRSGGVIAINLREDEEGRPDELVSARLVNSDQDLILVSRKG 680

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           ++    A +  S R  G A   +  +    + +++   V      L  V+  G A     
Sbjct: 681 QSVRFTASD-ESLRPMGRATSGVTGMKFRGDDELLAMDVVREDAFLFTVTEGGIAKRTAL 739

Query: 629 SEIIANTRKGKTFLKVS-------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           + +    ++G+  L +        + + +  +V    D V V+ E  K++  +  ++   
Sbjct: 740 T-VENYRQQGRGGLGIKVANLPEANGDLVGALVTDADDEVLVIMERGKIVRSATTEVNAT 798

Query: 682 SRGK-GVRLQSYKDGGISDVIC 702
            R   GV      +G     + 
Sbjct: 799 GRTTQGVIFAKPDNGDRIIAVA 820


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPLVG 753


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++    +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 398/760 (52%), Gaps = 28/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++NV  V+L   ++  +  YA+S I  RA+PD+RDG KPVHRRI++ M+E+G     
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             KKSARIVGEV+GK HPHGD S+Y+++VR+AQ +  R+ L  G GNFG++DGD AAA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF D ++  + EP+V P++FPNLL NGT+GIAVGMAT+
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E  +A   L++NPE S+  L+  I GPDFPTG +++  +  I  +Y  G+G  
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE+  G   IVVTE+PY V K+RL+E I  L   KRI  L  +RDES  +  
Sbjct: 246 TLRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R L   +++ ++F L+ ++T F  NM  +  G +P+++ L  IL +++ H+ E
Sbjct: 306 RVVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR++F     + R  IL+GL IA  NID II IIR        +  M+  F L+E Q
Sbjct: 365 VVERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RLR L  LE  +I++E  +L+A    +  +L   ++    I  E+ EVK  F+
Sbjct: 425 SQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFA 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT                    E + + +SN+G+I+                
Sbjct: 485 DK-----RRTELLVGEVLTLEDEDLIEE--EDVLITLSNKGYIKRLANDEFRAQNRGGRG 537

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  +   T D +L  +  G+ Y +    +        G  I  L+ L+
Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597

Query: 598 HNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T    D       L   +  G       S+       G   LK+   +++  V+
Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G+   ++G +    + F    + +M R   GV+  + ++G    V   +I +    +
Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREGDYV-VGTSRIDDSQEVL 716

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +           RGG G  V     R+GK   
Sbjct: 717 VISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAG 756



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +        +     +        +  G ++   +          L AL  ++GD L   
Sbjct: 597 DDGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           L     D +++ +  G +       +   R  G A   +  ++L     +V     D + 
Sbjct: 657 LRTSGEDEVIIGTHLGYSVRFKGAVV---RDMGRAAAGVKGVNLREGDYVVGTSRIDDSQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSE-EKMKLVVKVTGD-HVAVVGENR 668
           ++LV+S  G     + SE     R GK    + V+    K+  +  V GD  + V+ +  
Sbjct: 714 EVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++    D   + ++ F + +
Sbjct: 774 VIIRTNVANISQTGRAAQGVKVMRLDDE--AQIVTFALVD 811



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 29/254 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLG 493
           R+  ++  E  +       L      +   L+ G++    I     +  K +F  + +  
Sbjct: 569 RVYRMKGYEIPEYGRTAKGLP--IVNLLK-LDDGEKIATIINVDRDQAAKYLFFTTRNGI 625

Query: 494 RRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRSL 533
            +RT+  + S      L+   +              E   ++ ++ G+        +R +
Sbjct: 626 VKRTSTSQFSNIRTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM 685

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  ++ +EGD +        +  +L++S +G      A    +    G+ ++++
Sbjct: 686 GRAAAGVKGVNLREGDYVVGTSRIDDSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVM 745

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                   +      +    L+V++  G       + I    R   G   +++  E ++ 
Sbjct: 746 NVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIV 805

Query: 652 ---LVVKVTGDHVA 662
              LV  V  D   
Sbjct: 806 TFALVDPVIEDEEV 819


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/758 (37%), Positives = 434/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + E +V+ +SLR   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ 
Sbjct: 1   MSMDIQVAEGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELA 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +  VD+   ++   +EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV E+ EA   L+  PE +  +L+ ++ GPDFP+   I+     + + Y 
Sbjct: 181 VGMATDIPPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  +VRAR+  EE       +V+T +PYQV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 NGRGSVKVRARFVREEGN-----VVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +NMNV+ +   P+V+ L G+L 
Sbjct: 296 STHEEPTRLVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED+PKP ++  F 
Sbjct: 356 EWLDFRRSTVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPALMEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL LRLR L KLEE +I+ E D L  E++++  LL +     + I  E+R  
Sbjct: 416 LSERQAEAILELRLRHLAKLEEMKIRGEQDELEEERKRLKELLGNEAALTDLIERELRAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR    E   A   +  + +    P+TVV+S +GWIRS K H +D + 
Sbjct: 476 GEEYGDP-----RRAPIVEREEARALSEVELVGAD-PVTVVLSEKGWIRSAKGHDIDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A    T   ++LL   G+AYTL A NL S R  GE +   +++     +
Sbjct: 530 LSYKAGDRFALAARGKTNQPLVLLDDTGRAYTLTAHNLPSARSQGEPVTGRVNVAAGAHM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +   T + L+ S  G  FI     +   ++ GK  L V     +   + V    G 
Sbjct: 590 AGVMLGPPTTRYLLASDGGYGFIAPLEALTGKSKSGKGVLSVPKGCNVLAPLMVPEGEGI 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            VA V    +LL+F +DQ+PEM++GKG ++          ++  + D+      + L  +
Sbjct: 650 SVAAVSNEGRLLVFPLDQLPEMAKGKGNKMIDIPGARAARREEFLRDLTLLGPGQAL-VV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R       DL  + G RG  GS +P+G  +  + 
Sbjct: 709 QAGKRKLTLKAGDLDYYRGDRGRRGSKLPRGLQKVDRL 746


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A  RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/838 (31%), Positives = 403/838 (48%), Gaps = 110/838 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVY +LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +AL DNP +SI++L + I GPDFPTGGII+  R  I  +Y  GRG   +R +
Sbjct: 197 LGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIIL-GRAGIRSAYHTGRGSIVMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    I++TEIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDLRDESDRDGFRVVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  G  PQ M L  +L+ ++A R +V+ RR
Sbjct: 316 LKRDAVPDVVLNQLYKFTPLQTNFGANMVAL-DGGRPQTMNLKDLLQVFVAFREQVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  IL GL IA  NIDEII +IR    P                      
Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMSRDWPAQDVAAMIT 434

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +        L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELDKLAVEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + +  E+  +K  F+       RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQDIVKTELSAIKAEFATP-----RRTVIAE---QEGEMEDEDLIQREDMVVTVSH 546

Query: 527 RGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+         R+ +      + +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L   +  G G+A+  ++ L   + I T               ++  ++ GN    + S+
Sbjct: 607 RLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRRNKLSD 666

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRG---- 684
            +   R G   +K+   E++  V   T  D V +     + + F +  +     R     
Sbjct: 667 FVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGV 726

Query: 685 KGV------RLQSY------------KDGGISDVICFK---------------------- 704
           +G+      +L S             +   +                             
Sbjct: 727 RGIALAEGDKLISLTILRHVETTSDERTAYLKMRRAMSGETAAEEPVETEGEEAAAGAIQ 786

Query: 705 ---------ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      +    +  +   Y +  +        RGG G +      R+GK ++S
Sbjct: 787 LSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVAS 844



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 29/235 (12%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S   D+ R      ++   ++    Q   E++ + +  +    IR           
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTG 720

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG---------RG 585
             S+ +  +   EGD L       T  R +  ++D +   L     +SG           
Sbjct: 721 RTSMGVRGIALAEGDKLISL----TILRHVETTSDERTAYLKMRRAMSGETAAEEPVETE 776

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV- 644
             EA    I L+  + +    +      +L VS  G        E     R GK  + + 
Sbjct: 777 GEEAAAGAIQLSQERYVE---MSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMS 833

Query: 645 --SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             +   K+     V   D + +V +  +L+   +D I    R  +GV + +  D 
Sbjct: 834 VNNRNGKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADD 888


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/745 (35%), Positives = 446/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 TKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        
Sbjct: 418 KLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD-----D 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 473 RRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + T G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +D +P++S+GKG ++ +         D G++ +        LT I    R       +
Sbjct: 652 FPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L   +G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVVGERGRRGT-LMRGLQRIDRI 734


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/762 (30%), Positives = 384/762 (50%), Gaps = 36/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+AM + G     +F K 
Sbjct: 28  HIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKC 87

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 88  ARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETK 147

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 148 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHN 207

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     + NP  + E+    L+  I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 208 LREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQIL-GTKGIEDAYRTGRGSIT 266

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++  + D+RDE S    +
Sbjct: 267 MRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQ 325

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  F  NM  +  G VP+ + LD  ++ W+ H+ +
Sbjct: 326 RLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFVRHWVDHQMD 384

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D+ +  ++    + E Q
Sbjct: 385 VIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLMEFLQIDEAQ 444

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AILN++LR L  LE  +I+   D L+    + ++++ S  +Q   I+ E+ E+   + 
Sbjct: 445 AQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQREIISEELGEIVNRYG 504

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT    +   +     + +I +E + V I+  G+I+                
Sbjct: 505 DE-----RRTQI--MYGYNGDMSMEDLIPEEEVVVTITRGGYIKRTRSDQYRSQHRGGKG 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           +     +  D ++      T   IL  +  G+ Y      L        G+ I  L++  
Sbjct: 558 IKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEAGRDAKGQHIANLLEFQ 617

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I        Y+    L++ +  G       S+   N   G   + +   +++    
Sbjct: 618 GGEHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAF 677

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            V+  D + +V  N   L F  D   +  M R   GV    +++G    +    + EG  
Sbjct: 678 TVSDKDDILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFREGD-ELISANVVTEGSF 736

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   Y +  +     +  R G G  V K     G  + 
Sbjct: 737 VFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVG 778



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 16/224 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHA 557
                 ++    E     V+ +  G ++  +    D +      A++ +EGD +  A   
Sbjct: 620 EHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAFTV 679

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
              D ILL+S +G +    A +  S R  G +   +  +      ++++A V      + 
Sbjct: 680 SDKDDILLVSRNGMSLRFHADD-ASLRPMGRSTSGVTGMKFREGDELISANVVTEGSFVF 738

Query: 616 VVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           VV+  G A      E     R G   K    V     +   + V   D V VV  + K++
Sbjct: 739 VVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVV 798

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +++++P   R   GV     K G    +I     +     DS
Sbjct: 799 RSNVNEVPAKGRDTMGVIF--AKPGKGDSIIGVARNQDRQLDDS 840


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 447/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  V+++  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  EE       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEE-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE +I+ E  +L  E++++ + L S ++    +  E++     +
Sbjct: 417 QAESILELKLRHLAKLEEMKIRGEQADLEKERDQLQATLASERKMNTLLKKELQADSASY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+  CE     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GDE-----RRSPLCEREE-AKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   S++I+  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPDDQRLLMASDAGYGFICTFSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 MLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPPLMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKD-------GGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S           G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  GS + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++ ++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/750 (36%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ S+++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   LVV+   D +  +   
Sbjct: 590 DDQKLLLASDAGYGFICTFNDLVSRNRAGKAMISLPDNAHVMPPLVVENESDMLLAITSA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +PE+S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPELSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  GS + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 401/765 (52%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ IL  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN  I I++L++YII PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGI-IYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+G     I+VTEIPY V K+ +I + +EL+   +I  + +IRDES      V++
Sbjct: 245 KVAFEEIGN-RNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L  G  PQ + L  I+  ++ HR E++ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKG-RPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           R+ + ++    R  IL+G +        +D+ I+IIR+   P   K  +++ F L++ Q 
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  +      +  I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRT---EIDYSGGEMSIEDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK Y L    +  G     G AIQ LI++  
Sbjct: 535 RAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEGSKTAKGRAIQNLINIEP 594

Query: 599 NQDIVTAFVYDSTC--------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I      +            +++++  G                G   +++  ++++
Sbjct: 595 DDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYSRPRTNGIHAIEIREDDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD-GGISDVICFKICE 707
                  G+  + +  +N K + F  ++   + R   GVR  S +D   +  +I     E
Sbjct: 655 LGARLTNGNSEIMIATKNGKCIRFPEEKARAVGRTSIGVRGISLEDNDEVIGMIVVNDME 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G+ ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIA 759


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/752 (36%), Positives = 442/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SVRQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +  E++     F
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLKKELQADSNNF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   +++I+  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSADAASGADKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 LLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/759 (33%), Positives = 405/759 (53%), Gaps = 28/759 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +EN+K + +   +++ YL+YA+S I  RA+PD RDG KP  RRI+ AM+++ L   A
Sbjct: 2   TERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRA 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K A+I G+  G  HPHG+Q VY +LVR+AQ F  RYPLI GQGNFG+IDGD  AA R
Sbjct: 62  KFRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT V   I++ +++  VD+   Y++  +EPVV PSKFPNLL NG SGIAVGMATS
Sbjct: 122 YTEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  EIC+    +IDNPE++IE+L+  I GPDFPTG  I      I E Y+ GRG  
Sbjct: 182 IPPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQIC-GTSGIKEGYKTGRGTI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VRA+  VE    G   IVVTEIPYQ+ +  ++E+IA L+  + +  + D+R+ES     
Sbjct: 241 IVRAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGS 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D ++++  ++  + ++  F + M  L     P+ + L  +L  ++ HR+ 
Sbjct: 301 RLVIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDN-RPETLNLKQMLICYIEHRKV 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ +R+ F ++    R  +L+GL IA  NID +I +I+  D     +  ++S FSL+E Q
Sbjct: 360 VIVKRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLISTFSLSEIQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL++RL+ L  LE+ +I +E + L A+ ++  S+L + K   + I  ++ E+KE F 
Sbjct: 420 ANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSILANEKLVLDIIKKDVAEIKEQFG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+  A     ++ +I +E +TV+IS+ G+I+          +     
Sbjct: 480 DK-----RRT---EIVGAVGDLEREDLITEENVTVIISHEGYIKRLPLSAYRKQQRGGKG 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     KEGD  +    A T D IL  +  GK Y L   ++        G A+  L++L 
Sbjct: 532 VIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMGKITKGRALINLLELK 591

Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
             +++ +          +L++ +S G              + G   + +   + +  V  
Sbjct: 592 EGENVTSFIPVRNFDDRQLVMATSHGIIKKTVLKAYGNPKKGGIIAINLDEGDTLIGVKL 651

Query: 656 VTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G    ++  E  K + FS + +  + R  +GV+    K+G     +     E  + + 
Sbjct: 652 TNGKQDLILGTEQGKAVRFSEEDVRSVGRVSRGVKGIKLKNGDKVCGMVVVDDES-SLMT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +  N        RGG G +  K   R+GK + 
Sbjct: 711 ICENGFGKRTNFEEYSAKNRGGQGVINIKTTERNGKVVG 749



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 12/179 (6%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ ++ G I+     +        + A++  EGD+L      +    ++L +  GKA   
Sbjct: 611 VMATSHGIIKKTVLKAYGNPKKGGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRF 670

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
              ++ S       ++  I L +   +    V D    L+ +   G        E  A  
Sbjct: 671 SEEDVRSVGRVSRGVKG-IKLKNGDKVCGMVVVDDESSLMTICENGFGKRTNFEEYSAKN 729

Query: 636 RKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R G+  + + + E+   VV +      D + ++ +  K++   ++ I  + R  +GV+L
Sbjct: 730 RGGQGVINIKTTERNGKVVGLLDVRETDELIMITKGGKIIRTPVNTIRIIGRNTQGVKL 788



 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 2/133 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+   S  +  +  K GD +   +       ++ +  +G           +    G+ 
Sbjct: 675 VRSVGRVSRGVKGIKLKNGDKVCGMVVVDDESSLMTICENGFGKRTNFEEYSAKNRGGQG 734

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSE 647
           +  +     N  +V       T +L++++  G       +   II    +G     +   
Sbjct: 735 VINIKTTERNGKVVGLLDVRETDELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKA 794

Query: 648 EKMKLVVKVTGDH 660
           +K+  V +V  + 
Sbjct: 795 DKLISVARVIPEE 807


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/764 (30%), Positives = 391/764 (51%), Gaps = 37/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   +++ Y+ YA+S I  RA+P++RDG KPVHRR+++A  + G     ++ K
Sbjct: 14  DRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYASYDAGFRPDRSYVK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ V E +G  HPHGD ++YD+LVRLAQP+  RYPLI GQGNFG+   D AAA RYTEA
Sbjct: 74  SAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDGAAAMRYTEA 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +L+ +DE+ VDF   Y+ + +EP V P++ PNLL NG+ GIAVGMAT+IP H
Sbjct: 134 RLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSGGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A +  +++P+   E      +E I GPDFPT  +IV S + I ++Y  GRG  
Sbjct: 194 NLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGS-QGIRDAYTTGRGSI 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R+   +EE  +G+  +VVTE+PYQV    LI+ IAE +   ++  +  I D+ S    
Sbjct: 253 RMRSVVDIEE-NKGTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGISRIEDQSSDRVG 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +++ ++AH+ 
Sbjct: 312 MRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVAHQI 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TEN 426
           +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     +        L    E 
Sbjct: 371 DVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAARTGLMDLLEIDEI 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  E++ V + +
Sbjct: 431 QADAILAMQLRRLSALERQKIVDELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKY 490

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT       AD     + +I +E + V I+  G+         RS +    
Sbjct: 491 GD-----DRRTKII---AADGDVTDEDLIAREDVVVTITETGYAKRTKTDLYRSQRRGGK 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +     K+ D +K    + T D IL  +T G+ Y   A  L        G+ +  L+  
Sbjct: 543 GVQGAGLKQDDIVKHFFVSSTHDWILFFTTKGRVYRAKAYELPEANRTARGQHVANLLAF 602

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y     L++ +  G     +  +  +N   G   + +  E+++   
Sbjct: 603 QPEERIAQVIQLKSYQDAPYLVLATRNGLVKKSKLEDFDSNRSGGIAAINLRGEDELVGA 662

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              +  D + +V +  + + F  D   +  M R   GV+   + +   + +    + EG 
Sbjct: 663 QLCSADDDLLLVSQKGQSIRFHADDEALRPMGRQTSGVQGMRF-NADDTLLSLNVVREGT 721

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +    Y +        +  RGG G L      R G+ + +
Sbjct: 722 YLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHDRRRGELIGA 765



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 14/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        +Q    +  P  V+ +  G ++  K    D      ++A++ +  D L  A
Sbjct: 603 QPEERIAQVIQLKSYQDAPYLVLATRNGLVKKSKLEDFDSNRSGGIAAINLRGEDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S  G++    A +  + R  G     +  +  N +  +++  V     
Sbjct: 663 QLCSADDDLLLVSQKGQSIRFHADD-EALRPMGRQTSGVQGMRFNADDTLLSLNVVREGT 721

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVTGDHVA-VVGENR 668
            LLV +S G A      +     R GK  L ++ +    ++   + V  D     +    
Sbjct: 722 YLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHDRRRGELIGALIVDDDSELYAITSGG 781

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++  +  Q+ +  R  KGVRL +  +G     I     E
Sbjct: 782 GVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVIAIARNADE 821


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 406/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++++++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISYQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIRDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG 750



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK     +      ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/843 (31%), Positives = 417/843 (49%), Gaps = 115/843 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F   ++KS
Sbjct: 4   GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 64  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 124 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP+I++++++E I GPDFPTGGII+  R  +  +Y  GRG   +RA+
Sbjct: 184 LSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAK 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+  
Sbjct: 243 VDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ ++A R EV+ RR
Sbjct: 303 LKKDVVAEVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVAFREEVVSRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R  +L GL +A  NIDEIIA+IR    P+                     
Sbjct: 362 TKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIK 421

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L 
Sbjct: 422 LIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILA 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + +  E+  ++E F+       RRT F   S        + +I  E + V +S+
Sbjct: 482 SRVRIMHIVKDELSALREEFATP-----RRTVFGFGSA---EMESEDLIAPEDMVVTVSH 533

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  K+ D +     A+T   +L  S+ G  Y     
Sbjct: 534 SGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 593

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 594 RLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSD 653

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
            +   R GK  +K+  E+++  V   T  D V +   N + + F +  +     R   GV
Sbjct: 654 FVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGV 713

Query: 688 RLQSY-------------------------------------KDGGISDVICFKICEG-- 708
           R  +                                       D  + D+I     +G  
Sbjct: 714 RGINLAKGDKVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGG 773

Query: 709 ----------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKF 750
                              +  +   Y +  +     +  RGG G     P      GK 
Sbjct: 774 ETDLTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKL 833

Query: 751 LSS 753
           +++
Sbjct: 834 VAA 836



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 82/299 (27%), Gaps = 75/299 (25%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
                 GR       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 598 GTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQV 657

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR--------- 584
                 A+   E D +         D ++L + +G+    P  ++   +GR         
Sbjct: 658 NRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGIN 717

Query: 585 -GHGEAIQLLIDLNH------------------------NQDIVTAFVYDST-------- 611
              G+ +  +  L H                        + D+      D          
Sbjct: 718 LAKGDKVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDL 777

Query: 612 ------------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVV 654
                         LL VS  G        E   + R GK              K+    
Sbjct: 778 TDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAF 837

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGLT 710
            V   D + +V +  +L+   ++ I    R  KGV + +  +G  +  V      E  T
Sbjct: 838 PVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDT 896


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQAILASERKMNNLLKKELQADADAFGDE 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M   EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 476 -----RRSPLHEREE-AKAMSEHDMQPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   D +  +   
Sbjct: 590 DDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKD-------GGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S           G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFILPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  GS + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVCRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/763 (30%), Positives = 389/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AILN+RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G +R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  +EGD ++  +++ T D +L  +  GK Y+  A  +        G  +  L+
Sbjct: 533 GKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+ + +  M R   GVR  + +      V    +    
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRPHDYV-VGSGVLGSND 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +  +     +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     ++  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  +  +V + V  S  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRG-INLRPHDYVVGSGVLGSNDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       SE     R GK      +   +     ++V  +   + V+  +  +
Sbjct: 714 LVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKNGPLAGVIVINSSKDIMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    +G     +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVDNGSQVASLTIVPTE 811


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/790 (30%), Positives = 402/790 (50%), Gaps = 65/790 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N++ +++   ++  YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL       K
Sbjct: 21  QNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVK 80

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VGEV+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGD  AAYRYTEA
Sbjct: 81  CAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEA 140

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT +AE +L  +D+D VDF   +++  +EP++ P+K PNLL NG++GIAVGMAT+IP H
Sbjct: 141 RMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPH 200

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A + +++NP+ +++ +L+++ GPDFPTGG  +  +  I  +Y+ GRG F +RA
Sbjct: 201 NLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGG-FIHGKGGIKNAYQNGRGRFMMRA 259

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +      IVVTEIPYQV KS LI+KIA+L+  K I  + D+RDES  D   ++ 
Sbjct: 260 KVAVEHLPN-KDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVI 318

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              RS  P++++  ++  + M+  F +    +   + P+ M L   L  ++ HR +V+ R
Sbjct: 319 ELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQ-PKEMGLVQALNHFIDHRIDVVRR 377

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK----------------- 414
           R+ + +Q    R  IL+G L+A  ++D +IAIIR   N    +                 
Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437

Query: 415 ---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              P +      +  Q DAIL L+L  L +L   +I SEL ++     + +S+L S K+ 
Sbjct: 438 GKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKKL 497

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
            + I  E+ ++++      D G  R T  +   A+ +   + +I  E + V +S+ G+  
Sbjct: 498 RSVIVKELEQIRK------DYGDERRTIIQDEAAELSL--EDLIADEQVAVTVSHSGYLK 549

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS- 582
                  R  +        +  ++ D +++   A T   +L+ +  G+ Y L    +   
Sbjct: 550 RTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEI 609

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
              G G+ I  L+ L   + +          + +  +   + KG        +      +
Sbjct: 610 AAAGKGKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMAR 669

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   + +  ++++        + +  +       + F    +  M R   GVR      G
Sbjct: 670 GIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRGMDI--G 727

Query: 696 GISDVICFKICEGL-------------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               ++   I                   +      Y +  +     L  RGG G +  K
Sbjct: 728 AKDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGVINVK 787

Query: 743 GFPRSGKFLS 752
              R+GK ++
Sbjct: 788 TTERNGKVVA 797



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 29/220 (13%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + E+       + +G ++              + A+   + D L  A    +   + L S
Sbjct: 639 LEEESRYVFFTTRKGTVKKTALVDFSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLAS 698

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCK------------ 613
            +G A      ++   R  G     +  ++      IV   +     K            
Sbjct: 699 HEGLAIRFDEADV---RIMGRPAYGVRGMDIGAKDYIVGMAITPKERKKGKNGGADTANL 755

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           +L V+  G     +  E    TR GK  + V + E+   +  ++ VT D    V+ +  K
Sbjct: 756 ILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERNGKVVAIMLVTEDAEAMVISQYGK 815

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
           ++  S D I E  R  +GVRL   + G  ++  +     E
Sbjct: 816 IIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDE 855


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/772 (31%), Positives = 399/772 (51%), Gaps = 37/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   ++ N        +  V+L   ++  +L YA+S I  RA+PD+RDG KPV RRI++ 
Sbjct: 1   MAEQDMPN-------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYG 53

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+     +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG+
Sbjct: 54  MNELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGS 113

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEA+M+++A  +L+ +++D VDF D Y+  + EP V P++FPNLL NG 
Sbjct: 114 VDGDGAAAMRYTEAKMSKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGA 173

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP+HN+ E+      L+++P+I+ E L++ I GPDFPTGG+++  +  I 
Sbjct: 174 SGIAVGMATNIPTHNLGEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVM-GKSGIR 232

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   VRA+  +EE   G   I+V EIPY V K++LIE+IAEL   K I  + D
Sbjct: 233 KAYETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITD 292

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DE+  D   ++    R    ++++ +++ ++ M+T F  NM  +  G  P+++ L  I
Sbjct: 293 VNDETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGA-PKILSLKQI 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L+ +L H+  V+ RR+ F ++    R  I+ GL IA  +IDEII IIRN       K  +
Sbjct: 352 LQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNEL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ + L++ Q  AIL++RL  L  LE  +I+ E   L+A       +L   ++    I  
Sbjct: 412 MNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYD 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+++ F      G  R T  +V        +  +  +E I V +++ G+I+      
Sbjct: 472 ELMEIQKRF------GDERRTELQVGDITNIEDEDLIE-EEDIIVALTHNGYIKRLPVDE 524

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D ++  + + T D +L  +  GK Y++    +        G
Sbjct: 525 FKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             I  L+ +N+ + I           D    L   +  G       +E       G   L
Sbjct: 585 IPIINLLGINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKAL 644

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +   +++  V  ++ D   ++G  N   L F    +  M R   GVR    +D     +
Sbjct: 645 NLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYV-I 703

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      +  +   + +  +     +  RGG+G        ++G  + 
Sbjct: 704 GAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVG 755



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 12/211 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTD 561
             +     + +      +  G ++           S  L AL+  E D L          
Sbjct: 603 INVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQ 662

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +++ + +G A +  +  + S       ++  I L     ++ A   +S  K+LV+S  G
Sbjct: 663 PMIIGTHNGYALSFKSSVVRSMGRSAAGVRG-IRLRDEDYVIGAAPLNSDSKVLVISENG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  SE     R G     V+       +  +  V GD  + +V +   ++ F I+ 
Sbjct: 722 FGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIES 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + +  R   GV L    +G     I     E
Sbjct: 782 VSQTGRSAVGVHLIKMDNGARVATIAKVDKE 812



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIA 554
              D+    + + E +P+ +  ++ G+        +RS+   +  +  +  ++ D +  A
Sbjct: 647 HENDELIDVEVISEDQPMIIG-THNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYVIGA 705

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              ++  ++L++S +G      A         G  ++ +     N  +V     +    +
Sbjct: 706 APLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKNGPLVGLTTVNGDEDI 765

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           ++V+ +G         +    R   G   +K+ +  ++  + KV  +
Sbjct: 766 MLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKVDKE 812


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/769 (34%), Positives = 392/769 (50%), Gaps = 66/769 (8%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPV RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF   Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +  LA I++  ISIE L+
Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQV 277
           EYI GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV
Sbjct: 181 EYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++ L+ ++ 
Sbjct: 240 NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQV 299

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F +NM  LS    P+++ L  IL  ++ HRREV+ RR+ F ++    R  IL+ L IA 
Sbjct: 300 TFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIAL 358

Query: 398 LNIDEIIAIIRNEDKPKPV-------------------------------------MVSR 420
            NID II +IR    P                                           +
Sbjct: 359 ANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGK 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL    ++  +L +  +    I  E+ 
Sbjct: 419 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELV 478

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------- 533
            +KE ++       RRT   E++        + +I +E + V +S++G+++         
Sbjct: 479 AIKEQYND-----LRRT---EITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEA 530

Query: 534 -KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
            +      SA   KE D +   L A+T D IL  S+ G+ Y +    L        G  I
Sbjct: 531 QRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 590

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L  N+ I        Y+  C + + ++ G       +E       G   + ++  
Sbjct: 591 VNLLPLEPNERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEG 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G + V +     K++ F   Q+  M R   GVR  +    G   VI   I
Sbjct: 651 DELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRGINL--NGDDRVISLII 708

Query: 706 CEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             G    +      Y +           R   G +  K   R+GK + +
Sbjct: 709 PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGA 757



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 597 EPNERITAILPVREYEEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L S  GK    P G + S       ++  I+LN +  +++  +     ++
Sbjct: 657 DLTDGSNEVMLFSALGKVVRFPEGQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 715

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G       +E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 716 LTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 775

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 776 VRTRVSEVSVVGRNTQGVTLIRTAED 801


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/787 (31%), Positives = 390/787 (49%), Gaps = 52/787 (6%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +S S T        V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MSESTTEPPHPGDRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G      + K AR+VG+V+G  HPHGD S+YD+LVRLAQ +  RYPL+ GQGNFG+  
Sbjct: 61  DGGYRPDRGYSKCARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE RM  +A  +++ +DE+ VDF   Y+    EP V PS+FPNLL NG++G
Sbjct: 121 NDPAAAPRYTECRMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ E A  L+DNP+ S E+    LL  I GPDFPTG +I+  R  
Sbjct: 181 IAVGMATNIPPHNLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHR-G 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+ +G  C+VV+E+PYQV    L E IA L+   R+  +
Sbjct: 240 ISDAYRTGRGSITMRAVVEVEEI-QGRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGI 298

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D++D  S +  + ++    R     +++ +++  + ++T F  NM  L  G VP+ +P+
Sbjct: 299 ADVQDHTSGKTGQRLVIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPI 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
              LK W+AH+ +V+ RR+ FR++  + R  IL+ LL A   +DE+IA+IR        +
Sbjct: 358 HAFLKHWIAHQLDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESAR 417

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL ++LR L  LE  +I  E D L+      + +L   ++Q   
Sbjct: 418 DGLMGLLEIDEIQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDILARPERQRQI 477

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  E+ E+ E +              ++   +     + +I  E + V ++  G+ +  K
Sbjct: 478 VGDELAELVERYGDERK--------TQILPFEGDMTVEDLIPVEDVVVTVTRGGYAKRTK 529

Query: 535 SHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
           +                  +E D ++      T   +L  +  G+ Y      L  G   
Sbjct: 530 TDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGGRD 589

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           G G+ +  L+     + IV       Y+    L++ +  G       SE  +N   G   
Sbjct: 590 GRGQHVANLLAFQPGERIVAVLDIEDYEQAPYLVLATRGGIVKKTRLSEYDSNRSGGLIA 649

Query: 642 LKVSS----------EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
           + + S          ++++     V+ D  + +V      + F      +  M R   GV
Sbjct: 650 INLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMSVRFEATDENLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               ++  G  +++   +  + L         Y +           RGG+G  V K    
Sbjct: 710 TGMKFR--GEDELLAMAVARDDLFVFVVTELGYAKRTKIEHYRKQGRGGLGIKVAKLTEE 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGDLVGA 774



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---------------ALHF 545
           +      A L     E+ P  V+ +  G ++  +    D +               A   
Sbjct: 602 QPGERIVAVLDIEDYEQAPYLVLATRGGIVKKTRLSEYDSNRSGGLIAINLRSHPGADGT 661

Query: 546 KEGDSLKIALHAHTTDRILLLST----DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +E D    A    + D  L L +      +           GR    +    +      +
Sbjct: 662 EEVDDELFAATLVSEDEDLFLVSRKGMSVRFEATDENLRPMGRA--TSGVTGMKFRGEDE 719

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSS--EEKMKLVVKVT 657
           ++   V      + VV+  G A   +        R G      K++    + +  +    
Sbjct: 720 LLAMAVARDDLFVFVVTELGYAKRTKIEHYRKQGRGGLGIKVAKLTEERGDLVGALTVSE 779

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            D V VV +  +++   +D++P+  R   GV     + G     I 
Sbjct: 780 DDEVLVVMQAGRVVRSRVDEVPDKGRDTMGVTFARPETGDRILAIT 825


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/764 (31%), Positives = 402/764 (52%), Gaps = 29/764 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   E+ V  V +   +   YL Y++S I  RA+PD+RDG KPVHRR++ A SEM    
Sbjct: 2   ENNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRH 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSAR+VG+VIGK HPHGD SVYD++VR+AQ F  RYPL  GQGNFG+IDGDS AA
Sbjct: 62  NRPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+T +AE +L  ++++ V F   Y++    P V PSKFPNLL NG++GIAVGMA
Sbjct: 122 MRYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  + LI NP+  IE L+++I GPDFPT G+ +  RE I+++Y+ GRG
Sbjct: 182 TNIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGV-IAGREGILQAYKKGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              ++A   + +V +    I++TEIPYQV K++LIE +A+L+  K+I  + DIRDES+ +
Sbjct: 241 IVTIKAVAEIVQV-KDREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++  ++  + M+T F + M  L     P    L G+L+ ++ HR
Sbjct: 300 GMRIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           R+V+ +R  F ++    R  IL+GL  A  +I+E+I  IR   +    +  ++S+F  +E
Sbjct: 360 RDVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSKFEFSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL +RL+ L  LE  +I +EL  L+ + + +  +L+  ++ +  I  E+ +VK+ 
Sbjct: 420 RQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWLKFVLSDVREIYKIIVSELEDVKKR 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT   +++        + +I  E + V ++N G I+          K   
Sbjct: 480 YADP-----RRT---QITGDLSDLEDEDLIADEQMVVTVTNTGLIKRIPVEEYRVQKRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             L  +  KE D +     A T   +L+ +  GK Y      L   +    G+++  ++ 
Sbjct: 532 KGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLPLGTRTSKGKSLANVVQ 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L++ + +        +      ++++ KG                G   L    ++ +  
Sbjct: 592 LSNGESVRAILPVNEFSENKYAVMLTEKGVIKKTSLDAFANPRTAGIIALTTDLDDGVID 651

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGL 709
           V    G   + +  +    + F+   + EM R  +GV+  +  KD  +  +   +     
Sbjct: 652 VKISDGQSDIFIATKEGMSIRFNEADVREMGRTARGVKAITLAKDDVVVAMEVLEKNTKD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           T +    + Y +        +  RGGVG +  K   + G  + +
Sbjct: 712 TILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTTDKVGLVIGT 755



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 81/219 (36%), Gaps = 16/219 (7%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +A L      +    V+++ +G I+           +  + AL     D +     +   
Sbjct: 599 RAILPVNEFSENKYAVMLTEKGVIKKTSLDAFANPRTAGIIALTTDLDDGVIDVKISDGQ 658

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVS 618
             I + + +G +      ++         ++  I L  +  +V   V +   K  +L+V+
Sbjct: 659 SDIFIATKEGMSIRFNEADVREMGRTARGVKA-ITLAKDDVVVAMEVLEKNTKDTILMVT 717

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFS 674
           SKG     E  E    +R G   +   + +K+ LV+          + +  +  +++   
Sbjct: 718 SKGYGKRSETGEYRIQSRGGVGIITQKTTDKVGLVIGTKKVADNMELILSTDKGQVIRMK 777

Query: 675 IDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLT 710
           +  I  + R  +GVRL +   KD  ++ V      E  T
Sbjct: 778 VTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETAT 816


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKNGPLVG 753


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/754 (36%), Positives = 434/754 (57%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII AMSE+GL  
Sbjct: 2   SAEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+++++ A+++L  + +  VD++  ++    EP + P++ P++L NG  GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  A + L+DNP+  +++++ +I GPD+PT   I+ S   I + Y  GR
Sbjct: 182 ATDIPPHNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  S+L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  ++ + LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + +R   R+  I  R+ IL GLL AYLNIDE+I IIR ED PK  +++RF LT 
Sbjct: 357 EFRRTTVRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLTA 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ E D L  E+++++ LL S ++    I  EI    E 
Sbjct: 417 IQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDQLEKLLGSERRLSTLIKKEILADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ +I  E ITV++S++GWIR  K H VD + L+F
Sbjct: 477 FGD-----DRRSPLIERDE-AKAMTERDLIPSEAITVILSDKGWIRHAKGHEVDPTTLNF 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      H  +    + +  +G++Y L +  L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLTHAHGKSNAPAVFIGNNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  + GKT L +     +   + V  +  D + 
Sbjct: 591 VMGEEDQTWLISSDAGYGFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +                  + +G T  + +  
Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSRDEFLSYLLPLPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 450/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADAD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            + +  ++L+F +D +P++S+GKG ++ +         D G++ +        LT I   
Sbjct: 653 AITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 444/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPDFPT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWSKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   LV++   + +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESNMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKD-------GGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ S           G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIISIPAAEAASGQDGLAHLFVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  GS + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGS-LMRGLQKIDRV 737


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/839 (31%), Positives = 399/839 (47%), Gaps = 113/839 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 17  DIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYEQGHTPDKKYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG++DGD  AAYRYTEA+
Sbjct: 77  ARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEAK 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDF+  Y+  D EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP ISI++L + I GPDFPTGGII+  R  I  +Y LGRG   +R +
Sbjct: 197 LSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIIL-GRAGIRSAYHLGRGSIMMRGK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++ + +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+  
Sbjct: 256 VTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGYRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L  G  PQ M L  +L  ++A R  V+ RR
Sbjct: 316 LKRDAVADVVLNQLYKFTPLQTSFAANMLAL-DGGRPQTMTLKDLLTIFVAFRERVVTRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  IL GL +A  NIDEII +IR    P                      
Sbjct: 375 TKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMSRDWPARDVEAIIT 434

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +        L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 435 LIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDKLKIEIADYLEILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + I  E+  VK  F        RRT   E    +     + +I++E + V +S+
Sbjct: 495 SRARVQDIIKTELAAVKAEFGTP-----RRTAIIE---QEGEVEDEDLIQREDMVVTVSH 546

Query: 527 RGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+         R+ +      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 547 AGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L   +    G+A+  ++ L   + I T               ++  ++ GN    + S+
Sbjct: 607 RLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRRNKLSD 666

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GV 687
            +   R G   +K+   E++  V   T  D V +     + + F +  +     R   GV
Sbjct: 667 FVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGV 726

Query: 688 RLQSYKDGGISDVICFKI------------------------------------------ 705
           R  +  +G    VI   I                                          
Sbjct: 727 RGIALAEG--DKVISLSILRHVETTSDERTAYLKMRRAMSGETTTEEPVETEGEEAAGAI 784

Query: 706 -----------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    +  +   Y +  +        RGG G +      R+GK ++S
Sbjct: 785 QLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVAS 843



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 24/221 (10%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---------IRSLKSH-SVDLSALH 544
           RR+    +   D   +    I  E   V+++  G          +R      S+ +  + 
Sbjct: 671 RRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIA 730

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV- 603
             EGD +            +  ++D +   L     +SG    E             I  
Sbjct: 731 LAEGDKVISLSILR----HVETTSDERTAYLKMRRAMSGETTTEEPVETEGEEAAGAIQL 786

Query: 604 ----TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKV 656
                  +      +L VS  G        E     R GK  + +   +   K+     V
Sbjct: 787 SQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPV 846

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              D + +V +  +L+   +D I    R  +GV + +  D 
Sbjct: 847 EDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADD 887



 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   N N  +V +F  + + ++++V+ K
Sbjct: 799 QVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDK 858

Query: 621 GNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G           I   + +G      + +E +  V  +  +      EN 
Sbjct: 859 GQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIGEE-----TENG 903


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 443/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LLE + GPDFPT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVVVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K  +   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SYKSDVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DERKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIDDESDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEALKGEDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/809 (45%), Positives = 506/809 (62%), Gaps = 65/809 (8%)

Query: 6   ISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S+ +     N + +   LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM  
Sbjct: 1   MSDDDLDPNMNARNLAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRR 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT ++E +L+G+DE++VDFR  Y+    EP V P+ +PNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTVMSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+  A L LI +P    + L++Y+ GPDFPTGG+IVE  E+I  +Y
Sbjct: 181 AVGMATNIPPHNIGELINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG  R+RARW VE++GRG W  VVTEIPYQVQKS+L+E+IAELI  K+IP+L D+RD
Sbjct: 241 RTGRGSIRLRARWHVEDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESA+D+R+VL PK +++DPDLLM  +F  SD+E RF LNMNVL  G  P+V  L   L+ 
Sbjct: 301 ESADDIRMVLEPKTKNVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +L  RR+VL RRS  RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDFRRDVLIRRSKHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWS 420

Query: 424 TENQVD--AILNLRLRS--LRKLEEYQIKSELDNLLAEKEKI------------------ 461
             +Q       + R     L  ++   ++   D    E+  +                  
Sbjct: 421 RPHQSTIPRATDERDYRSPLTGVDVKALELRDDPDAVERGVLADDGTSSAVPRRFVGRSE 480

Query: 462 -------DSLLNSGKQQWNQI--------ACEIREV------------------------ 482
                  +++LN   +   ++          ++ E                         
Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEELNE 540

Query: 483 -KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            K+ F+K    G+R TTF E + A+     +AMIE+EP+TVV S  GWIR++  H     
Sbjct: 541 VKKTFTKGYKRGQRLTTFAEATEAE-DVPLEAMIEREPVTVVCSKMGWIRAMTGHIALDR 599

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L FK+GD  +   HA TTD++L+  ++G+ YT+ A NL  GRG GE ++L++DL ++ +
Sbjct: 600 ELKFKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGGRGMGEPLRLMVDLPNDTE 659

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           IV   V+    +LLV SS G+ F+V E E+IA TR GK  L V    K  +   V+G+ V
Sbjct: 660 IVDILVHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDPVKAMICKPVSGNAV 719

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+LIF +D++PEM RGKGVRLQ YKDGG+SDV  F +  GL+W+D AGR+   
Sbjct: 720 AVVGENRKVLIFMLDELPEMGRGKGVRLQKYKDGGLSDVRTFTLEAGLSWLDPAGRTRTV 779

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S ++L  W+ KR G G + P+GFPR  KF
Sbjct: 780 SSDELTEWVAKRAGSGRMAPRGFPRDNKF 808


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/758 (35%), Positives = 445/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LL+ +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +C E+       IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYCEEQGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPLLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E     KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGD-----DRRSPVIERVE-AKALSEKDLIPSESVTVVLSDKGWARVGKGHDLDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L      
Sbjct: 530 LNYRAGDGYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/770 (31%), Positives = 412/770 (53%), Gaps = 35/770 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N N     ++  +++   +   Y+ Y++S I  RA+PD+RDGFKPVHRR++  MSE+G+
Sbjct: 4   NNENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGV 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                +KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS 
Sbjct: 64  YHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSP 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+ ++AE +L  ++++ VDFR  +++   EP V PS+ PNLL NGTSGIAVG
Sbjct: 124 AAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+ E   A IDNPEI+IE+L+ +I  PDFPTG  I+     +  ++  G
Sbjct: 184 MATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTG-GIIYGYGGVKAAFETG 242

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R+    E    G   IVVTEIPY V K+ +IEK AEL+  K+I  +  IRDES 
Sbjct: 243 RGRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESD 302

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                +++   +   P++++ +++  + ++T F +N   L     P+ + L  +++ ++ 
Sbjct: 303 RQGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALV-HGKPETLNLKQLIEHYVK 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           HR +V+ RR+ + ++  ++R  IL+GLLIA  ++DE+I++IR+    D+ +  ++ +F+L
Sbjct: 362 HRLDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEKFAL 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RL+ L  LE  +I  E   + A  E+++++L S +++ + I  ++ ++K
Sbjct: 422 SEIQARAILDMRLQRLTGLERDKITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIK 481

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             +      G  R +  E+   +     + MI  + + V ++++G+I+            
Sbjct: 482 TKY------GDERRSKIEMVGGEFNI--EDMIPDDEMLVTVTSQGYIKRTNLSEYKSQSR 533

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
                  +  K+ D  +    A   + +L  +  G+ Y L    +  G     G AIQ L
Sbjct: 534 GGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYWLRVFEVPEGNKTSKGRAIQNL 593

Query: 594 IDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           I++  +  I             Y     +++ +  G              + G   + ++
Sbjct: 594 INIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYSRPRQNGIIAININ 653

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVIC 702
             +++  V    G D++ +     K + F    I  M RG  GV+  S  +D     +IC
Sbjct: 654 EGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPMGRGATGVKGISLAEDDKAIGMIC 713

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    +  + + Y +  +     +  RG  G        + G  ++
Sbjct: 714 VNRPDAQLLV-VSEKGYGKRSDIEDYRITSRGAKGVKTLNMSEKVGNLVA 762



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA-------TLQQAMIEKEPITVVISNRGWIRSL------ 533
              T  GR       +   DK        TL      K    V+ +  G ++        
Sbjct: 581 GNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYS 640

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +     + A++  EGD L      +  D I++ +  GKA       +         ++ +
Sbjct: 641 RPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPMGRGATGVKGI 700

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
                ++ I    V     +LLVVS KG     +  +    +R  K    ++  EK+  +
Sbjct: 701 SLAEDDKAIGMICVNRPDAQLLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSEKVGNL 760

Query: 654 VK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           V        D + ++      +   +  +  M R  +GVRL    D      I 
Sbjct: 761 VAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASIT 814


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 391/765 (51%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDNDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN++E+      L+ NP+++ + L++ I GPDFPTG  I+  R  I  +Y  
Sbjct: 181 GMTTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +LK +L
Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPH-FLTLKQMLKYYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+ +V+ RR+ F +   + R  IL+GL IA  +IDEI+ II   ++ D  K  ++SRF 
Sbjct: 359 DHQEDVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISRFG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  ++++E  +L  +      +L   ++    I  E+ ++
Sbjct: 419 LDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIADYKDILAKPERIDQIIYDELLDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G  R T    S    +   + +IEK+ + + ++++G+I+           
Sbjct: 479 QKRF------GDERRTEIGASEV-ISIEDEDLIEKQNVLLTLTHKGYIKRMPITEFKTQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  + GD  +  +++ T D +L  +  GK Y+  A  +        G  I  
Sbjct: 532 RGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYEIPEFGRTAKGLPIVN 591

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I T            L  ++  G       SE       G   L +   ++
Sbjct: 592 LLQLEKGEKIQTVINIPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V    I  
Sbjct: 652 LSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPMGRTAAGVRGINLRDNDYV-VGSEVIKP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 711 NDEVMVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKNGPLAG 755



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 13/227 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 596 EKGEKIQTVINIPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 655

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T   G++         ++  I+L  N  +V + V     ++
Sbjct: 656 LTTDGKQNILIGTHLGYAVTFNEGDVRPMGRTAAGVRG-INLRDNDYVVGSEVIKPNDEV 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKL 670
           +V+S KG       SE     R GK     +  EK   +  V  V G   + V+  +  +
Sbjct: 715 MVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKNGPLAGVTVVDGSKDIMVITTDGIM 774

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSA 715
           + F I  +P+  R   GVRL     D  +S +      +     D++
Sbjct: 775 IRFKISDVPQTGRNTLGVRLIKVNGDSKVSSLAIVPTEDDQETTDNS 821


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/771 (31%), Positives = 413/771 (53%), Gaps = 44/771 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G++  +A KK
Sbjct: 5   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VDF+  +++   EP V P+K P LL NG SGIAVGMAT++  H
Sbjct: 125 RMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN +I I++L+ YI  PDFPTGGI +   E + E+++ GRG   +RA
Sbjct: 185 NLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGI-IYGYEGVREAFKTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G   I+VTEIPYQV K+ +I+  A+L+  K+I  + +IRDES  +   V++
Sbjct: 244 KVGFEEV-NGREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ +++  + +++ F +N   L  G  PQ++ L  ++  ++ HR +V+ R
Sbjct: 303 ELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKG-RPQMLNLKDLIYHFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+I IIR     D+ +  ++ RF L+E Q  AI
Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIERFKLSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E + ++     +  LL S + +   I  E+ E+++ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELLASKEMRMQVIKDELAEIRDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E S  D +   + +I  E + + IS+ G+I+              V   + 
Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADESVVITISHAGYIKRTSLSEYKTQNRGGVGQKSA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             ++ D L+    A     ++  +  GK Y +    +  G     G AIQ LI++  +  
Sbjct: 534 GTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTKASKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y  +  L++V+ +G        +       G   + +   +++   
Sbjct: 594 VKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKPRVNGVAAITIKEGDELLGA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT- 710
               G   V + G++ K++ F  ++   M R   GVR  +  D     +    + +    
Sbjct: 654 KLTNGSSQVLIAGKSGKMVRFEEEKTRPMGRTASGVRGITLADENDEVIGIVTVNKEDVN 713

Query: 711 ---WIDSAGRSYNRSENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
               +      Y +    +         +  RGG G        ++G  ++
Sbjct: 714 ETQILVVTENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITEKTGALIA 764



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 22/217 (10%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++++ +G ++              ++A+  KEGD L  A   + + ++L+    GK    
Sbjct: 615 IMVTKQGQVKKTSLEKYSKPRVNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRF 674

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESE- 630
                         ++ +   + N +++     +    +  ++LVV+  G     +  E 
Sbjct: 675 EEEKTRPMGRTASGVRGITLADENDEVIGIVTVNKEDVNETQILVVTENGYGKRTKLVEE 734

Query: 631 -----IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEM 681
                     R GK    ++  EK   ++ +      D + ++ ++   +   +  +  M
Sbjct: 735 DGVDVYRITNRGGKGVKTLNITEKTGALIAINNVTDDDDLMIINKSGLTIRMMVSDLRVM 794

Query: 682 SRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            R   GV+L + K +  I+ V      +    +D  G
Sbjct: 795 GRATQGVKLINIKGNDSIAAVTKVLREDEEIVLDENG 831


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +  +
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPI 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPKLMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E + L  E++++ S+L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNELEKERDQLQSILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +    +   LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPLQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/769 (31%), Positives = 408/769 (53%), Gaps = 35/769 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      + +  + +   +   Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++GL 
Sbjct: 4   DLENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLA 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD SVY+++VR+AQ +  RY ++ GQGN+G+IDGDS A
Sbjct: 64  NNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR  ++AE +L  +++D VDF+  +++   EP V PSK PNLL NG+SGIAVGM
Sbjct: 124 AMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E   A +A IDN EI+I +L+++I  PDFPTG I +     + E++  GR
Sbjct: 184 ATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAI-IYGYTGVQEAFETGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +RA+  +E   +    I+VTEIPYQV K+++IE+ AEL+  K++  + +I+DES +
Sbjct: 243 GRIVMRAKAEIE-AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNK 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +++   R  +  +++ ++F  + ++T F +N   L  G  PQ++ L  ++  ++ H
Sbjct: 302 DGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKG-RPQLLNLRDLIHYFVEH 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLT 424
           R EV+ RR+ F +    +R  IL+GLLIA  ++DE+I +IR+ D P+      + +F L+
Sbjct: 361 RHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLS 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++ LR L  LE  +IK E + L+   E + S+L+   ++   I  E+ E+KE
Sbjct: 421 DIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKE 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRTT    +        +  IE E + + IS+ G+I+   +         
Sbjct: 481 KYGDE-----RRTTIVHSAE---DMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGRG 532

Query: 545 F--------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLI 594
                    +  D ++  L A   + +L  +  G+ + L    +  G     G AIQ +I
Sbjct: 533 GKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNII 592

Query: 595 DLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           ++   + I             Y     +++ + KG                G   + ++ 
Sbjct: 593 NIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININE 652

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++      TG   + +   + + + F+ +++  M R   GVR  +        V    
Sbjct: 653 GDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAHEKDEVVGMIA 712

Query: 705 ICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + G T +  + + Y +  +     +  RGG G        ++G  ++
Sbjct: 713 VDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVA 761



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 74/189 (39%), Gaps = 12/189 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++ + +G I+     +        ++A++  EGD L  A     +  I++    G
Sbjct: 616 ENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSG 675

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEES 629
           +A       +         ++ +   +   ++V     D     +LVVS KG     +  
Sbjct: 676 RAIRFNEEKVRPMGRTATGVRGVTLAHEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIE 735

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK 685
           +     R GK    ++  +K   +  +  VT  D + ++ ++  ++   + ++  M R  
Sbjct: 736 DYRVTNRGGKGVKTINVTDKTGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRAT 795

Query: 686 -GVRLQSYK 693
            GVRL + K
Sbjct: 796 QGVRLINLK 804


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 405/760 (53%), Gaps = 29/760 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNF ++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++++P+ +  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KR+  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R     +++ ++F L+ ++T F  NM  +  G VP+++ L  I+  +++H++EV
Sbjct: 300 FVIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+IAIIRN +     +  ++SRF L+E Q 
Sbjct: 359 IIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ E+K  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L  
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLED 591

Query: 599 NQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T                 + +G     E SE     + G   LK+   +++  V+
Sbjct: 592 GETIQTIINARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVL 651

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
             +G D + +   +   + F+   I  M R   GVR    ++     V   +I +    +
Sbjct: 652 LTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDD-RVVGASRIRDNQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + +  +        RGG G       P++G+   
Sbjct: 711 VITENGFGKRTSATDYPTKGRGGKGIKTANIIPKNGQLAG 750



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++  +           L AL  KEGD L   L     D I++ +  G  Y++
Sbjct: 612 FFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSG--YSV 669

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 S R  G +   +  + L  +  +V A       ++LV++  G       ++   
Sbjct: 670 RFNE-ASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPT 728

Query: 634 NTRKGKTFLK---VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK       +    ++  +V V G + + V+     ++  ++  I +  R   GV+
Sbjct: 729 KGRGGKGIKTANIIPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVK 788

Query: 689 LQSYKDGGISDVICFKICE 707
           +        + ++ F + +
Sbjct: 789 IMKLDAD--AKIVTFTLVQ 805



 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 27/254 (10%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L  G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LEDGETIQTIINARKEETAGKSFFFTTKQG 618

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK------------EPITVVISNRGW--------IRS 532
             +RT   E +   +  L+   +++            +   ++ ++ G+        IR+
Sbjct: 619 IVKRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRN 678

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  +  +E D +  A        +L+++ +G      A +  +    G+ I+ 
Sbjct: 679 MGRSATGVRGVKLREDDRVVGASRIRDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKT 738

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
              +  N  +      D T  ++V+++KG       + I    R   G   +K+ ++ K+
Sbjct: 739 ANIIPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798

Query: 651 KLVVKVTGDHVAVV 664
                V  +  ++ 
Sbjct: 799 VTFTLVQPEDSSIA 812


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/773 (32%), Positives = 410/773 (53%), Gaps = 43/773 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + E  V  + +   L++ +LAY++S I  RA+PD+RDG KPVHRRI++ M ++G+    
Sbjct: 2   DIFEGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++ KSAR+VG+ +GK HPHGD S+YD++VR+AQ F  RYPLI G GNFG++DGDSAAA R
Sbjct: 62  SYSKSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE +M  +A  +L  +D+D VDF   Y+E++ EP V PSKFPNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEIS--------IEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IP HN+ E+ +    LID              EKLL+ I GPDFPT G+++   E I ++
Sbjct: 182 IPPHNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLM-GTEGIQKA 240

Query: 243 YRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           Y  GRG  ++RA+  +E++       I+VTEIP+ V KSRLIEKIAEL+  K+I  + D+
Sbjct: 241 YTTGRGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDL 300

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R ++P +++  ++  + ME  F +N+  L  G  P+ + L  +L
Sbjct: 301 RDESNRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDG-TPKTLTLKAML 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + ++AH++EV+ RR+ F ++       I++GL  A   IDE+I IIR   N++  +  ++
Sbjct: 360 EYFIAHQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLM 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +RF  +E Q  AIL++RLR L  LE  ++ ++   L  E     ++L S K     I  E
Sbjct: 420 TRFEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDEIAYHLAVLQSDKMVREIIKTE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E++  +         R +   +         + +I  E + + ++++G+I+       
Sbjct: 480 LGEIRVKYDNP------RRSIITIDTTKMDI--EDLIADEDVVITVTHKGYIKRLPLTTY 531

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGE 588
              +     ++ +   E D ++    A T   IL  ST GK Y L A  +        G 
Sbjct: 532 RSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRAHAIPDAGRTAKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           A+  L++L+ ++ I        +     LL V+ KG        E     + G   L + 
Sbjct: 592 AMINLLNLSQDEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLD 651

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++++  V +  G D + +   + K++ F  + +  M R  +GVR      G    V+  
Sbjct: 652 DDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPMGRTARGVRGMKL--GKKEYVVGV 709

Query: 704 KICEG----LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  G    +  +      + +        +  RGG+G +  K   ++GK   
Sbjct: 710 DVIGGYDKDMELLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNKKTGKLAG 762



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                AT+     + +   + ++ +G I+              L AL   + D L     
Sbjct: 602 DEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLDDDDELIAVRQ 661

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
               D ILL +  GK    P  ++         ++ +  L   + +V   V   YD   +
Sbjct: 662 TKGKDDILLATPSGKIIRFPENDVRPMGRTARGVRGM-KLGKKEYVVGVDVIGGYDKDME 720

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRK 669
           LL ++  G A      E     R G   +       + +   + V  + + + V+ ++  
Sbjct: 721 LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNKKTGKLAGIKVVTSEEELMVITDDGI 780

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++   +  I    R  +GV     K G  + V+   
Sbjct: 781 VIRQEVSGISVQGRSAQGVTAM--KTGEDNKVVALA 814


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 405/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 405/765 (52%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+ +L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E      E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/772 (29%), Positives = 391/772 (50%), Gaps = 44/772 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ + L+  +++ YL YA++ I  RA+P++RDG KPVHRRI++AM + G      F 
Sbjct: 10  HDRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAMYDGGYRPDRGFS 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K +RIVG+V+G+ HPHGD ++YD+LVRLAQP+V R P+I  QGNFG+   D AAA RYTE
Sbjct: 70  KCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSPGNDPAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  +A  +++ +D++ VDFR  Y+    EPV+ PS+FPNLL NG++GIAVGMAT IP 
Sbjct: 130 CRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSAGIAVGMATQIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++E+  AA   ++NP+ S E++    +E+I GPDFP G +IV   + I ++YR GRG 
Sbjct: 190 HNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIV-GYKGIDDAYRTGRGS 248

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAED 308
             +RA   +EE  +G   +VV+E+PY V    L +KIAEL+   ++  + DIRD+ S+  
Sbjct: 249 VTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGIADIRDDTSSRT 308

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            + ++    R   P +++ +++  + ++  F  NM  L  G VP+ + LD  +  W+ H+
Sbjct: 309 GQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDG-VPRTLSLDLFITHWIDHQ 367

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ +R++  ++   + +G + A   +DE+IA+IR     D+ +  ++S   + E
Sbjct: 368 IEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQGLISLLDIDE 427

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I   L+ L A    ++ +L    +Q + +  E+ E+ + 
Sbjct: 428 IQAQAILDMQLRRLAALERQKIIDRLNELEAVIADLEDILADPVRQRHIVRDELAEIVDK 487

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537
           F        RRTT      AD     Q ++  E + V I+  G+         R      
Sbjct: 488 FGD-----DRRTTII---AADGDLSVQDLVPDEDVVVTITRGGYAKRTKTDLYRVQNRGG 539

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595
             +     +  D +           +L  +T G+ Y      L  S R   G  +  L+ 
Sbjct: 540 KGVRGATMRAEDEIGHFFATTNHHWMLFFTTKGRVYRAKVWQLPESARDAKGSHVAGLLS 599

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMK 651
              +++I        YD    L++ + KG        +  +  + G   +     ++++ 
Sbjct: 600 FQPDEEIAQVLTLRDYDQADYLVLATKKGLVKKTPLRDYDSARQSGIIAVNFREADDELI 659

Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI-- 705
                +  D + +V +  + + F+ +   +  M R   GV    ++ G   +++   +  
Sbjct: 660 GADLASAEDDLLLVSKKGQSIRFTANDEQLRPMGRATSGVTGMKFRAG--DELLSMSVIR 717

Query: 706 ----CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +           Y +           RGG+G    K     G  + +
Sbjct: 718 AGSEEDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGA 769



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 22/219 (10%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKE-GDSLKIALHAHTTDRILLLS 567
            ++    V+ + +G ++       D +      A++F+E  D L  A  A   D +LL+S
Sbjct: 615 YDQADYLVLATKKGLVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVS 674

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSK 620
             G++    A +      GR     +  +     ++     ++ A   + T  +  V+  
Sbjct: 675 KKGQSIRFTANDEQLRPMGRATS-GVTGMKFRAGDELLSMSVIRAGSEEDTQFVFTVTDA 733

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     V   ++    +  ++ V  D V  +  + +++   +D
Sbjct: 734 GYAKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGALIVVDSDQVLAIKTSGQVVRSRVD 793

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +P   R   GVR      G    V+       LT  D 
Sbjct: 794 SVPVKGRDTMGVRFAGV--GASDAVVAIARNTDLTVADE 830


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/787 (30%), Positives = 403/787 (51%), Gaps = 52/787 (6%)

Query: 6   ISNSNTLVEE--------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           +++ NT V           V+ V L   ++  YL YA+S I  RA+P +RDG KPVHRR+
Sbjct: 1   MTDENTPVTTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRV 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM + G      F K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG+   D AAA RYTE +M  ++  +++ +DE+ VDF D Y+    EP V P++FPNLL 
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIV 233
           NG++GIAVGMAT+IP HN++E+   A   ++N E S E+LL    E I GPDFPTG ++V
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   
Sbjct: 241 -GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDG 298

Query: 294 RIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           ++  + D+RDE S+   + ++    R     +++ +++  +D+++ F  NM  L  G VP
Sbjct: 299 KVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VP 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           + + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D 
Sbjct: 358 RTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT 417

Query: 413 ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +  ++    + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  
Sbjct: 418 VEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPV 477

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +Q   ++ E+  + E +        R+T        +     + +I +E I V ++  G+
Sbjct: 478 RQRGIVSEELTALVEKYGD-----DRKTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGY 529

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     +     KE D +     + T   +L  +  G+ Y   A  L 
Sbjct: 530 IKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                  G+ +  L+    ++ I        Y++   L++ +  G        +  +   
Sbjct: 590 DAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRS 649

Query: 637 KGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GV 687
            G   + +       ++++     V+  D + ++ +  + + F+     +  M R   GV
Sbjct: 650 GGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGV 709

Query: 688 RLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +  S+++G   +++   +    T++  +    Y +  +     +  RGG+G    K    
Sbjct: 710 KGMSFREG--DELLSMNVVRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVED 767

Query: 747 SGKFLSS 753
            G  + +
Sbjct: 768 RGSLVGA 774



 Score = 44.4 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 699 LRPMGRATSGVKGMSFREGDELLSMNVVRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLG 758

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V +   ++L ++  G       + +    R   G   + +   
Sbjct: 759 IKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKR 818

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 819 DAVVGIAR 826


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/753 (35%), Positives = 447/753 (59%), Gaps = 24/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ +  +  +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLIHDGSERQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+ +A + LID P ++++ +LE++ GPD+PT   I+  RE I + YR GRG
Sbjct: 182 TDIPPHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V++ +P+Q   ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAIWKKED-----GEVVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNLLEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++ RF ++E 
Sbjct: 357 YRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEPKPKLIERFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++ + +LL S ++    I  EI+      
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQ------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +   G  R +  +     KA  +   I  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 471 ADAQAYGDDRRSPLQEREEAKAMSEHDFIPSEPVTIVLSEGGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L    L S RG GE +   +       I    
Sbjct: 531 AGDSFRAAARGKSNQPVVFIDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    K    +++ G  D +  +
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPENAKALPPIEINGADDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGR 717
            +  ++L+F ++ +P++S+GKG ++ S         +  ++ +        +T +    R
Sbjct: 651 TQAGRMLMFPVNDLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSIT-VHVGKR 709

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  +L  +  +RG  G+L+P+G  R  + 
Sbjct: 710 KLVMKPQELQKFRAERGRKGTLLPRGLQRIERV 742


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/766 (33%), Positives = 421/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ 
Sbjct: 1   MTDTKEF-ENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G ++KKSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 60  LVSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+ +  +  IDN +ISI +L E I GPDFPTG +I+  R+ I ++Y+ 
Sbjct: 180 GMATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIM-GRDGINKAYKT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S
Sbjct: 239 GRGKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSS 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    +  + ++++  ++  + ++  + +    L  G  PQ++ L  +++ ++
Sbjct: 299 NKRGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNG-RPQILNLKELIRYYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+ EV+ RR+ F +   + R  I++GL IA  NID +I IIR+    K V       FS
Sbjct: 358 DHQVEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+
Sbjct: 418 LTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           K+ +      G  R T  + S +D     + +I++E + + ++  G+I        +  K
Sbjct: 478 KDKY------GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQMGYIKRMPEGTYKPQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++AL  KE D +K      T DR+L  +  GK Y L A  +        G A+  
Sbjct: 530 RGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I +      +D    LL+V+ KG        E     + G   +K+  ++K
Sbjct: 590 LLNLDKGEKITSVINVEEFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDK 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V GD  + +V +  K + FS D++ +  R   GV+  +  +     V    + +
Sbjct: 650 LISVHLVRGDEEIILVTKEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTI-VSSDIVGD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +   + +           RGG G    K   ++GK  ++
Sbjct: 709 GNYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAA 754


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/757 (35%), Positives = 434/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+ D ++    EP   P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+D P+  + +LLE + GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E+       I++T +P+Q    +++E+IA  +IAK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTLEQ-----GEIIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D++  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGLKEMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R++ +  R+ IL  LLIA+LNIDE+I IIR ++ PK  + +RF+
Sbjct: 356 EWLVYRVGTVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPKSELKARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++I +E + L AE++K+  +L S ++    +  E+   
Sbjct: 416 LTDKQAEAILDLKLRHLAKLEEFKITAEQEELAAERDKLQLILGSERRLKTLVKKELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +  +     RR+   E S   KA  QQ +   E +TVV+S +GW+R  K H VD  A
Sbjct: 476 GETYGDA-----RRSPIVERSE-SKALTQQELTPTEAVTVVLSEKGWVRCAKGHDVDGQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + T G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFATDSHTLPSARSQGEPITTRFNMAPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + D   + L+ S  G  FI   S++ +  + GK  L +    +  +  ++      
Sbjct: 590 QHVLMGDDDQRYLMASDAGYGFICSFSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSP 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG------ISDVICFKICEGLTWID 713
            +  +    ++L+F +D +P++S+GKG ++             +   +C    +    + 
Sbjct: 650 SILAITNEGRMLMFELDALPQLSKGKGNKIIGIPSERSKAREELLAHLCLVPADCSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 407/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   +++         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGENVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/765 (34%), Positives = 429/765 (56%), Gaps = 31/765 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++N +V EN+    +   ++E YL YA+S I  RA+PD+RDG KPVHRRI++ M  +G+ 
Sbjct: 2   DNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGIT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                KKSAR VGEV+ K HPHGD S+YD++VR+AQ F  RY L+ G GNFG+I+GD AA
Sbjct: 62  PDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+ +A  +L+ +D+  VDF   +++E+ EP V PS+FP LL NG++GIAVGM
Sbjct: 122 AMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ATSIP HN+ E+ +A + LID+ E S+E+L + I GPDFPTG  I+  R  I E Y  G+
Sbjct: 182 ATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKIL-GRAGIREGYLTGQ 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++R+   +E+  +G   +VV+EIPYQV K+RL+EKI EL+  K I  + +IRDE+ +
Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  +  +++  ++  + ++    + M  L  G   + + L  IL E++ H
Sbjct: 301 EGIRIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALVNGEPKK-LTLLQILNEYIKH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTEN 426
           ++E++ RR+ F ++  + R  IL+GL IA  NIDEII IIR+  D  K  ++  FSL+E 
Sbjct: 360 QKEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQKLMDTFSLSEV 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++L  L+ LE  +I++E   L  +      +L++     N I  E+ E+KE +
Sbjct: 420 QTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNVIKEELLEIKEKY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
           +       RRT   +    D    ++ +IE++ +T+ ++++G+         ++ K    
Sbjct: 480 ADE-----RRTQIVD---DDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQKRGGK 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            ++ L  +E D +K  ++  T D +L  +  GKA+ + A  +        G  I   ++L
Sbjct: 532 GITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIINFVNL 591

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +  ++I      D       L+ V+S+G    V+ SE  +N + G   +K+   +K+  +
Sbjct: 592 DKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIAI 651

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLT 710
            K  G D V +V      + F+ + +    R   GV+  + K  G  ++I  + + +G  
Sbjct: 652 EKTNGDDDVLIVTRKGMSIRFNENDVRATGRQSIGVKAITLK--GDDEIISMQLVSKGKE 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP--KGFPRSGKFLSS 753
            +  + + Y +        L  RGG G+     K F  +G+   +
Sbjct: 710 LLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGA 754



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 18/228 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           + +    A +      ++   + ++++G I+ +K    + +      A+   +GD L   
Sbjct: 592 DKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIAI 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +  D +L+++  G +      ++    G        I L  + +I++  +     +L
Sbjct: 652 EKTNGDDDVLIVTRKGMSIRFNENDV-RATGRQSIGVKAITLKGDDEIISMQLVSKGKEL 710

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVAVVGENR 668
           LVVS KG        +    TR GK      +       E    ++    D + ++  + 
Sbjct: 711 LVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGALIVDEEDDIMLINSDG 770

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKDGG----ISDVICFKICEGLTW 711
            ++     +IP +SR  KGVR+    +      ++ V+  +  E LT 
Sbjct: 771 IVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVMNEEDSEQLTL 818


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/758 (36%), Positives = 444/758 (58%), Gaps = 25/758 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +S    L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE
Sbjct: 13  DLMSE---LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSE 69

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NID 122
           +GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D
Sbjct: 70  LGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDD 129

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             S AA RYTE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+G
Sbjct: 130 PKSFAAMRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTG 189

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT   I+  R+ I + 
Sbjct: 190 IAVGMATDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKI 249

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+R
Sbjct: 250 YQNGRGSVRQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLR 304

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES  +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  I
Sbjct: 305 DESDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEI 364

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL  RR+ + RR ++R+  + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SR
Sbjct: 365 LSEWLVFRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSR 424

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F ++E Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++    +  E++
Sbjct: 425 FDISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLKKELQ 484

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
                F        RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D 
Sbjct: 485 ADSNNFGD-----DRRSPLREREE-AKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDP 538

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           + L +K GDS   A    +   +  + + G++YTL   +L S RG GE +   +      
Sbjct: 539 AGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGA 598

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TG 658
            +    +     +LL+ S  G  FI   +++I+  R GK  L +    ++   + V    
Sbjct: 599 VMEQVLMEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHED 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-I 712
           D +  + +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +
Sbjct: 659 DMLLAITQAGRMLMFPVGELPQMSKGKGNKIISIPSADAASGADKLAWLMILPPGSAITL 718

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               R       +L  +   RG  G+L+P+G  +  + 
Sbjct: 719 HVGKRKLLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 756


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/769 (30%), Positives = 407/769 (52%), Gaps = 36/769 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ + E+ +  + +   +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KS   VGE +   HPHGD +VYDSLVR+AQ F  R+PL+ G GNFG+ DGD+AAA
Sbjct: 62  DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ +++  +L  +++D VDF+  ++E + EPVV P++FPNLL NG+SGIAVGMA
Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           T+IP HN+ E  +   A++DNPEI+I++L ++YI GPDFPT   I+  +  I ++Y+ GR
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKII-GKRGIRDAYKTGR 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR+   +EE+      IVVTEIPY V K+RL+EKIA+L+  K+I  +  I+DES  
Sbjct: 241 GRLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGR 300

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS----MGRVPQVMPLDGILK 362
            +   ++    R  +P++++  ++  + ++  F +NM  +         P+ + L  ++ 
Sbjct: 301 EEPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVID 360

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++AH+ +V+ RR+ F +   + R  IL+GL IA  N+DE+I IIRN       K  +  
Sbjct: 361 YYIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSE 420

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF  ++ Q  AI+++RL  L  LE  +++SE + LL + +    +L +       I  E+
Sbjct: 421 RFGFSDKQSQAIVDMRLGRLTGLEREKLESEYNELLEKIKYFRDVLANEILVHQIIKDEL 480

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             +K  ++       RRT    +   +     + +I+++   + +++ G+I+        
Sbjct: 481 TVIKNKYADE-----RRTK---IEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYK 532

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             +     +  L  +E D +K      T   I+  +  G+ Y L A  +     +  G A
Sbjct: 533 SQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTA 592

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ LN ++ + T      Y     L++ +  G     +  E  +  + G   + +  
Sbjct: 593 IVNLLQLNGDEKVTTVIPIQEYKEGLYLVMATKNGLVKKTDLMEYDSIRKGGLAAVSLRE 652

Query: 647 EEKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V    G+   ++   N   + F       + R  +GV+     +G    +I  +
Sbjct: 653 NDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPIGRVSQGVKGMELDEG--DFIIGME 710

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +C +  T +      + +        +  RGG G L  +   ++GK + 
Sbjct: 711 VCTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITEKTGKSIG 759



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ +  G ++       D      L+A+  +E D L           I+L + +G A   
Sbjct: 621 VMATKNGLVKKTDLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRF 680

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                   R  G   Q +  ++L+    I+   V      LLVV+  G     E  E   
Sbjct: 681 KE---TDARPIGRVSQGVKGMELDEGDFIIGMEVCTDNTTLLVVTENGFGKRTELDEYKV 737

Query: 634 NTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
            TR GK  L       + + + +++    D + ++  +  ++   +++I  + R   GV 
Sbjct: 738 QTRGGKGVLTYRITEKTGKSIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVT 797

Query: 689 LQSYKDG 695
           L    +G
Sbjct: 798 LMRMSEG 804


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 398/765 (52%), Gaps = 39/765 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 18  DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 78  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 138 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L++NP+       E  +E+I GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 198 NLRELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIV-GTQGIKDAYTTGRGSI 256

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DE S    
Sbjct: 257 RMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVG 315

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++AH+ 
Sbjct: 316 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVAHQI 374

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR  +     +  ++   ++ E 
Sbjct: 375 EVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEV 434

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  + A    +  +L S  +Q   +  E++E+ + +
Sbjct: 435 QADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRTIVRDELKEIVDKY 494

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RR+       A     ++ +I +E + V I++ G+         +S +    
Sbjct: 495 GD-----DRRSQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 546

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++ 
Sbjct: 547 GVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 606

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ + +G       S+  +    G   + ++  +K+   
Sbjct: 607 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 666

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKIC-EG 708
              +  D + +V E  + + FS D   +  M R   GV+   ++  G   ++   +  +G
Sbjct: 667 SLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRFR--GDDHLLAMTVVRDG 724

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +  +     +  RGGVG +  K  P+ GK + +
Sbjct: 725 SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGA 769



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 32/217 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +    + +      A++  EGD L  A
Sbjct: 607 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 666

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G++    A +    R  G +   +  +    +  ++   V     
Sbjct: 667 SLCSNEDDLLLVSEEGQSIRFSADD-EQLRPMGRSTAGVKGMRFRGDDHLLAMTVVRDGS 725

Query: 613 KLLVVSSKGNAFIVEESE-------------IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            LLV ++ G        E                N ++GK    ++ ++          D
Sbjct: 726 YLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGALAVDDD---------D 776

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            +  +     ++   ++QI   SR   GVRL + +DG
Sbjct: 777 QIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDG 813


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/764 (34%), Positives = 427/764 (55%), Gaps = 33/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H V EI +A + LIDNP+  + ++L+++ GPDFPTGGI +  +  I E+Y  GRG 
Sbjct: 182 NIPPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGI-IYGKNGIREAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  + 
Sbjct: 241 IKVRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  +     P++  L  +L  +++HR+
Sbjct: 300 IRVVIELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKE-PKIFTLLELLGLFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   P   K  ++S+F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541
           S       +R T  E     ++   + +I  E + V +S+RG+++ +   + +       
Sbjct: 479 ST------KRLTAIE--EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGK 530

Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
              + +  + D ++    + T D I+ ++  G+ Y L    +   S    G+A+  LI+L
Sbjct: 531 GKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    +   +  G       SE       G   + +   +++   
Sbjct: 591 APDEKIMATITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEG 708
             ++     + VV      + FS+D + E+ R  +GV    +K     +         E 
Sbjct: 651 KIISPAIQQILVVTYEGMCVRFSVDNVREIGRVARGVTAIKFKIPKDYVIGATVVS-NEN 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        +  RGG G +  K   ++GK + 
Sbjct: 710 EEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLTSKTGKLVG 753


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/764 (34%), Positives = 416/764 (54%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L  
Sbjct: 2   ENLFENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA
Sbjct: 62  KVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  +E        IV+ E+PYQV K+RLIE+IA+L   K+I  + ++RDES  +
Sbjct: 241 RVKIRAKHHIE-SKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + SRF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSRFGLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+   ++++ +L S  +    I  E+ E+KE 
Sbjct: 419 IQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELILRSEDRLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           FS       RRT   E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D    L   +  G       SE       G   + +  ++++  
Sbjct: 591 LRADEKIMAIIPTSDFDEAKSLTFFTKNGIVKRTSLSEFSNIRSNGVRAIVLDDDDEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
             +  V   ++ V     + + F +D+  E  R  +GVR   +K D  I         E 
Sbjct: 651 AKIATVDTKYLMVFTSLGQCIRFEVDKAREQGRSTRGVRAIKFKIDSDIVVDAEIIDSED 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K  P++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNVIG 754



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 14/237 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 A +  +  ++       +  G ++              + A+   + D +  A 
Sbjct: 593 ADEKIMAIIPTSDFDEAKSLTFFTKNGIVKRTSLSEFSNIRSNGVRAIVLDDDDEIVTAK 652

Query: 556 HAH-TTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            A   T  +++ ++ G+            GR       +   ++ +  +    +     +
Sbjct: 653 IATVDTKYLMVFTSLGQCIRFEVDKAREQGRSTRGVRAIKFKIDSDIVVDAEIIDSEDQE 712

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTGDHVAVVGENRK 669
           +L VS KG        E     R G     +K+   +   +  V+      + ++    K
Sbjct: 713 ILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNVIGEVLVDDTQDLMLLTSIGK 772

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           ++   +  I +  R   GV + +  KD  +  +      +    +D  G     +E+
Sbjct: 773 MIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIELDEFGNVIRYNED 829


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYILPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 439/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++ N +  E V+   LR   E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTDHNAMSLEGVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  V++   ++    EP + PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L++NP+  +E+L+ ++ GPD+PT   I+  R  I + Y+
Sbjct: 181 VGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA + V +       IV+T +P+QV  S+LIE+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVKMRAVYQVID-----GEIVITALPHQVSGSKLIEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D +M  +F  +D+E  + +N+N+L +   P V  L  IL 
Sbjct: 296 SDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK  ++SRF 
Sbjct: 356 EWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAALMSRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL ++LR L KLEE +I++E + L AE++K+ ++L S ++    +  E+   
Sbjct: 416 LSEKQAEAILEIKLRQLAKLEEIKIRAEQEELAAERDKLQTILGSERRLKTLVKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     +A  +Q +   EP+TVV+S + W R  K H V+  +
Sbjct: 476 AETYGD-----DRRSPLVERGE-ARALTEQELTPAEPVTVVMSQKAWGRCAKGHDVEPES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD         +   ++ L + G+AYT    +L S R  GE +    +L     +
Sbjct: 530 LSYRAGDGYLAHARGRSNQPVVFLESSGRAYTTEPHSLPSARSQGEPLSGRFNLVAGARL 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +       L+ +  G  F+ +  E+++  + GK  L V +  ++    ++     D
Sbjct: 590 EHVVMGQDDDHYLMATDAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQAND 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +  +    ++L+F + Q+P +++GKG ++          ++  +  ++       +T +
Sbjct: 650 RLLAISTEGRMLLFPLSQLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGAQIT-L 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R      +DL  +LG+RG  G+ +P+G  R  K 
Sbjct: 709 WAGKRKLTLKSSDLEHYLGERGRRGNKLPRGLQRVDKV 746


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 408/762 (53%), Gaps = 33/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +K + L   +++ ++ YA+S I  RA+PD +DG KPV RRIIH M+E+G      
Sbjct: 1   MEQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM+++A  +++ +++D VDF   Y+ E+ EP V PS+ PNLL NG++GIAVGMAT+I
Sbjct: 121 TESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           PSHN+ E+ +A LA+  NP+I+I +L++ YI GPDFPTG  I+  R +I ++Y  G G  
Sbjct: 181 PSHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYIL-GRGAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E++G     I+VTE+PY V K+RLIEKIA  +  K I  + ++RDES  +  
Sbjct: 240 VMRAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R + P++++  ++ L+ ++T F +N   L  G  P+ + L  ++  +L H+ +
Sbjct: 300 RIVIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGE-PKTLSLKEMINVYLEHQED 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ F ++  + R  IL GL  A   ID II +IR+       +  ++  F ++E Q
Sbjct: 359 VIRRRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLMDEFDMSERQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I++EL+ LL     +  +L + ++    I  E+ E+K  + 
Sbjct: 419 AKAIREMQLQRLAGLEREKIENELNTLLETIADLKDILANKERIIAIIDQELLEIKAKYG 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   + S        + +I +E + + ++N G+++                
Sbjct: 479 DK-----RRTEIIQGS---FDIEDEDLIPEEDVVISLTNNGYVKRMPIDTYKAQNRGGKG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +     D +   ++  T D +L+ +  GK Y +   N+     +  G  I  L++++
Sbjct: 531 IKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFGRQAKGLPIINLLNMD 590

Query: 598 HNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            ++ + T         D +  L  V+  G        E     + GK  L +   +++  
Sbjct: 591 KDEQVKTMISITPSEVDESHFLFFVTKDGLVKRTGLPEFENIRQSGKLALTLREGDELVD 650

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V    G   + +   N K + F  + +  M R   GV+  +  D  I  V      + + 
Sbjct: 651 VKLTNGKSEILLAAANGKAIRFDENDVRPMGRSASGVKGMNVDDSHIIGVTTNTEGQNIL 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I    + Y +        L KRGG G        ++G+ +S
Sbjct: 711 IIT--EKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 15/211 (7%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTT 560
             ++  + +++      ++  G ++                AL  +EGD L      +  
Sbjct: 598 MISITPSEVDESHFLFFVTKDGLVKRTGLPEFENIRQSGKLALTLREGDELVDVKLTNGK 657

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCKLLVVSS 619
             ILL + +GKA      ++   R  G +   +  +N  +  I+          +L+++ 
Sbjct: 658 SEILLAAANGKAIRFDENDV---RPMGRSASGVKGMNVDDSHIIGVTTNTEGQNILIITE 714

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           KG   +    E   + R GK    V+      ++  +  V G + + ++     ++   +
Sbjct: 715 KGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVSIKAVEGNEDLMIITNEGIIIRLPM 774

Query: 676 DQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +Q+    R   GVRL    +G     I    
Sbjct: 775 EQVKSAGRATQGVRLIKVGEGASVSSITVVD 805


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/746 (35%), Positives = 447/746 (59%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++ ++L S ++  N +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMSNLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +    ++   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENARVMQPVVIEDETDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAAKGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746
               +L    G+RG  G+ + +G  R
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQR 733


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/757 (35%), Positives = 445/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+ +A + LIDNP++ +E+L+E + GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D LM  +F  +D+E  F +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +  R+ IL+ L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL+L+LR L KLEE++IK+E   L AE+EK++ LL+S ++    I  E+++ 
Sbjct: 416 LTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S   +A  +Q ++  E +TVV+S +GW+R  K H +D +A
Sbjct: 476 AETYGDE-----RRSPLVERSE-SRALSEQELVPAEAVTVVLSEKGWVRCAKGHDIDPTA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +    + + + G+A+      L S R  GE +     L+  + +
Sbjct: 530 LSYKAGDGFLCAASGRSNHATVFIGSTGRAFATDTHTLPSARSQGEPVTTRFQLSPGESM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
             A + +     L+ S  G  FI +  ++++  + GK  L + +  ++    +V     +
Sbjct: 590 AHALLGEDGQCFLLASDAGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS+D +P++++GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSVDALPQLAKGKGNKIIGIASDRAKSREELLVHLHVVPQDTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R  K 
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDKV 746


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/752 (37%), Positives = 449/752 (59%), Gaps = 25/752 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNPE  +  +++Y+ GPD+PT   I+  R  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P+V  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK V+++RF ++ 
Sbjct: 357 EFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAVLMARFGISA 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELAKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  E ITVV+S +GW+R  K H VD  +L +
Sbjct: 477 YGD-----DRRSPLIERAE-SKALTERDLVPSEAITVVLSEKGWVRHAKGHDVDCQSLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  +++ L +DG++Y+L A +L S R  GE I   +++     I   
Sbjct: 531 KSGDQYLAHACGKSNQQVVFLGSDGRSYSLEAHSLPSARTQGEPITGRLNITEGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662
            + +     LV S  G  F+ +  E+++  R GK  + +    ++      V +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++ +        ++  +S +I       +T + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLTKGKGNKIINIPAAKSKEREEFVSHLISLPQGAAIT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R      +DL  + G+RG  GSL+P+G  R 
Sbjct: 710 KRKLGLKASDLENFRGERGRRGSLLPRGLQRV 741


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  I  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/753 (34%), Positives = 420/753 (55%), Gaps = 30/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   +++ YL Y++S I  RA+PD+RDG KPVHRRI+ AMSEMG+     FKKS
Sbjct: 3   NINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY+++VR+AQ F  RY LI G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  +D++ +D+R  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALI+N EI+ E+L+EY+ GPDFPTGGI ++  + I E+Y  GRG  RVR +
Sbjct: 183 LGELLDGVLALIENKEITPEELMEYVTGPDFPTGGI-IDGTKGIYEAYTTGRGRVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLF 314
             +EE+  G   I++TEIP+QV K+RLIEKIAEL+  K+I  + D+RDE SA +   ++ 
Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P++++  I+  ++++  F + +  L     P+V+ L  IL  ++ HR +V+ R
Sbjct: 302 ELKRDEEPEIVLNKIYKYTELQNTFGIILLALVDNM-PKVLNLKEILSHYINHRFDVITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+G  +A  NID II IIR     +  +  ++ ++S ++ Q  +I
Sbjct: 361 RTKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEKYSFSDIQARSI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++++E   L+   +++  +L++ ++ ++ I  +  E+KE +S    
Sbjct: 421 LDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYDIIKEDCEELKEKYSDE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
               R T  E  R D     + +I+ E + V ++N+G+++          K     +S  
Sbjct: 479 ----RRTQIEEERLD--INIEDLIKDEKVIVTLTNKGYVKRMNLDKYKAQKRGGKGVSTQ 532

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
           +  EGD L+    A   D +++ +  GK Y L    +   S +  G+ I  LI+L  N+ 
Sbjct: 533 NTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIANLINLQENEK 592

Query: 602 ---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              I+    +  T  LL V+ +G       SE     R G   +K+   + +  V  V  
Sbjct: 593 VKSIIKTREFSDTQDLLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLKDGDDLIFVGLVES 652

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D V +  +N   + F  +    M R   GVR  + +             +  T +   
Sbjct: 653 PNDQVFIATKNGYSIKFPHENARNMGRATIGVRGINLRKDDDVVSAVIIKRDDTTILTVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              Y +   +    L  R G G +  +   ++G
Sbjct: 713 ENGYGKRTREDEYPLQSRSGKGVINLRCNEKTG 745



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 16/219 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           + +   K+ ++          + ++  G ++              L A+  K+GD L   
Sbjct: 588 QENEKVKSIIKTREFSDTQDLLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLKDGDDLIFV 647

Query: 555 -LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STC 612
            L     D++ + + +G +   P        G        I+L  + D+V+A +      
Sbjct: 648 GLVESPNDQVFIATKNGYSIKFP-HENARNMGRATIGVRGINLRKDDDVVSAVIIKRDDT 706

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +L V+  G      E E    +R GK  + +   EK    +++      + +  +  N 
Sbjct: 707 TILTVTENGYGKRTREDEYPLQSRSGKGVINLRCNEKTGVVVEVTSVTEEEELMAITSNG 766

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFK 704
            ++    D I  + R   GVR+   ++    +S V   K
Sbjct: 767 IVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKVMK 805


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|332990040|gb|AEF09023.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 752

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/854 (31%), Positives = 414/854 (48%), Gaps = 114/854 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M              +++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADSETPKPGGEPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G ++  +++KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F  R PL+ GQGNFG+
Sbjct: 61  MHENGYEWNKSYRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD+ AA RYTE R+ +V   +L  +D+D VDF+D Y+  + EP V P+KFPNLL NG 
Sbjct: 121 VDGDAPAAMRYTEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ EI +  +AL+D+P +  E LL+ + GPDFPTG +I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALIL-GRTGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +E + +    ++VTEIPYQV K+ +IEK+AEL+  KRI  + +
Sbjct: 240 QAYLTGRGSILMRAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   V+    R    D+++ +++ L+ ++T F +NM  LS G+   V+ L  +
Sbjct: 300 IRDESDRDGMRVVIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPG-VLTLHDV 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+I +IR    P       
Sbjct: 359 LTAFIAFREEVISRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREAL 418

Query: 414 ----------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 K      + L+  Q  AIL+LRL+ L  L   +I  EL
Sbjct: 419 MARDWPAKDMAPLIALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S  +    +  E+  +KE F        RRT   E          
Sbjct: 479 DKLAVEIADYLDILASRPRMRAIVRAELIAIKEEFGTP-----RRTEIVEGFG---DLED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+I+          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIQREEMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y L    L   + +  G+A+  ++ L  ++ I +  +           +++
Sbjct: 591 LFFSSKGQVYKLKVWRLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
             ++ G       ++     R GK  +K++  E +  V   T  D V +       + F 
Sbjct: 651 FATTGGTVRRNALTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFP 710

Query: 675 IDQIPEMSRGK---GVRLQSYKDGGISDVICFKI-------------------------- 705
           +  +    +G+   GVR    +DG    +I   I                          
Sbjct: 711 VTDVRVF-KGRDSVGVRGIRLEDG--DTIISMAIIGHVDASAEERLAYIKRRRALAGEAT 767

Query: 706 -------CEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                   EG +                    +  +   Y +  +     +  RGG G +
Sbjct: 768 EAGDVEAEEGASGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIV 827

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ ++S
Sbjct: 828 AMAVNERNGRLVAS 841



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 71/269 (26%), Gaps = 74/269 (27%)

Query: 508 ATLQQAMIEKEPITVVI-SNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             L +   E E + ++  +  G +R        + +     A+   EG+++         
Sbjct: 635 VLLPEDSDENERLQIMFATTGGTVRRNALTDFQQVNRNGKIAMKLNEGEAIADVGLCTED 694

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------------- 607
           D +LL +  G     P  ++   +G        I L     I++  +             
Sbjct: 695 DDVLLTTAAGACIRFPVTDVRVFKGRDSVGVRGIRLEDGDTIISMAIIGHVDASAEERLA 754

Query: 608 --------------------------------------YDSTCKLLVVSSKGNAFIVEES 629
                                                       +L VS  G        
Sbjct: 755 YIKRRRALAGEATEAGDVEAEEGASGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSY 814

Query: 630 EIIANTRKGKT--FLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R GK    + V+    ++     V   D + +V +  +L+   +D I  + R  
Sbjct: 815 EYRVTGRGGKGIVAMAVNERNGRLVASFPVEDQDQIMLVTDGGQLIRCPVDGIRIVGRAS 874

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDS 714
                         VI F   EG   +  
Sbjct: 875 ------------QGVIVFDTAEGERVVSV 891


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/858 (30%), Positives = 415/858 (48%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +++E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL-GRSGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLNLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
           + ++  R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P   +  ++
Sbjct: 367 RAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLM 426

Query: 419 SR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            R                          ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +    +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  K+ D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  DG    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLADG--DKVISMAILHHVDADAAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG----EAI 590
            +S+ +  ++  +GD +            +      ++  L   ++   R  G    + I
Sbjct: 728 RNSIGVRGINLADGDKVISMAIL----HHVDADAAERSAYLK-RSIAERRAQGADDADDI 782

Query: 591 QLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTF----- 641
            ++ +   N+  +    Y         +L VS  G        E   + R GK       
Sbjct: 783 VVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDT 842

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            K     K+  +  V   D + +V +  +L+   +D I    R  KGV + +  DG    
Sbjct: 843 SKTDEIGKLVALFPVESSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGE-KV 901

Query: 700 VICFKICEGLTWIDSAGRS 718
           V   +I E  +  ++ G  
Sbjct: 902 VSVERISETDSDEENGGEG 920


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/865 (31%), Positives = 408/865 (47%), Gaps = 124/865 (14%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M 
Sbjct: 4   KDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+   +EP V P+KFPNLL NG  G
Sbjct: 124 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L   I GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIIL-GRAGIRLA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R +  +E V +    I+++EIPYQV K+ ++E+IA+L+  K+I  + D+R
Sbjct: 243 YHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   PD+++  ++  + ++T F  NM  L     PQ+M L  +L 
Sbjct: 303 DESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVAL-DAGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R +V+ RR+ + +     R  IL GL IA  NIDEII +IRN   P         
Sbjct: 362 LFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+  VK  F+       R+T   E    +     + 
Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATP-----RKTVIIE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T        +      ++  
Sbjct: 594 FSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V   T  D V +   N + + F + 
Sbjct: 654 TTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVS 713

Query: 677 Q--------IPE-MSRGK-GVRLQSYK--------------------------------- 693
                    +     R   GVR  +                                   
Sbjct: 714 DQRDGKEFGVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRR 773

Query: 694 ----------------DGGISDVICFKICEGLTWIDSA---------GRSYNRSENDLLG 728
                           +G  + V   ++ E      SA            Y +  +    
Sbjct: 774 GGVEERAAVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEY 833

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
               RGG G +      R+GK ++S
Sbjct: 834 RTTNRGGKGIVAMSVNNRNGKLVAS 858



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK  + +   +   K+     V   D + +V 
Sbjct: 812 SEQFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVT 871

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRS 718
           +N +L+   ++ I    R  +GV    +       V+  + I E     +  G  
Sbjct: 872 DNGQLIRCPVEGIRVAGRSTQGV--IVFDTADDEKVVSVEHIPEAEETENGNGNG 924



 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   N N  +V +F  + + ++++V+  
Sbjct: 814 QFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDN 873

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V  +         EN 
Sbjct: 874 GQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIPEAEE---TENG 920


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/767 (31%), Positives = 394/767 (51%), Gaps = 52/767 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 4   RIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGDQ+VY++LVR+AQ F  R  L+ G GNFG+ID D  AA RYTE R
Sbjct: 64  ARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECR 123

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +T  A+  +LQ +D + VDF D Y+    EP+V P++ P LL NG+SGIAVGMAT+IP H
Sbjct: 124 LTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALI NP ++  +L+++I  PDFPTGG+I+  +E I E+Y  GRG   +R 
Sbjct: 184 NLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIM-GQEGIREAYTTGRGSITLRG 242

Query: 255 RWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              VE + +        I++TE+PYQ  K+ +IEKIAEL+  K++  + DIRDES  +  
Sbjct: 243 VATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGM 302

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P +++ +++  + +++ F +NM  +  G  P+ + L   L+ +L  R E
Sbjct: 303 RVVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGE-PRTLTLRDALQAFLDFRAE 361

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ + +Q  + R  +L+G L+A   +D +IA+IR   +    +  + +   L+E Q
Sbjct: 362 VIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQATLGLSEAQ 421

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ E++++K  F+
Sbjct: 422 ADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFA 481

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541
                  RR+  C     D       +IE     + ++ +G+I+ +      +       
Sbjct: 482 SP-----RRSRLC---LEDCELKVADLIENRETVIFLTEQGYIKRMDLEEFQVQGRATRG 533

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
                 K+ D+++      + D IL  +  G  YTLPA  +   S    G AI  L+ + 
Sbjct: 534 KAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQGSRTARGSAIVQLLPIT 593

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + +      +     L++++  G       S        G   + +   ++++ V 
Sbjct: 594 REERVTSMVPVSEFSDDEYLVMLTRAGYIKKTALSAFANVRSNGLIAISLEENDELRWVR 653

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKIC---- 706
           +  + D V +       + F  D   +  + R  +GVR  +   G   D++   I     
Sbjct: 654 RARSSDDVVMATRQGMCIRFRADDEQLRPLGRATRGVRAITLNPG--DDIVSMDIIFAES 711

Query: 707 ------EGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 EG        +        +           RGG G +  K
Sbjct: 712 VMAAEREGERLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATK 758


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/810 (45%), Positives = 508/810 (62%), Gaps = 66/810 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++I +   +   +V    LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MNDIVDDPNMNPRDVAE-PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  RLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L G+DE++VDFR  Y+    EP V P+ +PNLLANG+SG
Sbjct: 120 GDNPAASRYTEARMTIMAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P    + LL+Y+ GPDFPTGG+IVE R++I ++
Sbjct: 180 IAVGMATNIPPHNIGELIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA+W VE++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIR
Sbjct: 240 YRTGRGSIRLRAKWEVEDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAED+R+VL PK++++DPDLLM  +F  SD+ETRF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESAEDIRMVLEPKSKNVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L  RR+VL RR+  RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++    
Sbjct: 360 AFLDFRRDVLCRRARHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDW 419

Query: 423 LTENQVD--AILNLRLRS--LRKLEEYQIKSELDNLLAEKEKI----------------- 461
              +Q       + R     L  ++   ++   D     +  +                 
Sbjct: 420 SKPHQATIARATDERDYRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGGRS 479

Query: 462 --------DSLLNSGKQQWNQI--------ACEIREVK---------------------- 483
                   +++LN   +   ++          ++ E +                      
Sbjct: 480 EGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQLR 539

Query: 484 ---EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F+K  D G R TTF E   A+     +AMIE+EPITVV S  GWIR++  H    
Sbjct: 540 EVKKAFAKDLDRGARLTTFAEAGEAE-DVPLEAMIEREPITVVCSQMGWIRAMTGHIDLN 598

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             L FK+GD  +   HA TTD++L++ ++G+ YTL A NL  GRG GE ++L++DL +  
Sbjct: 599 RELKFKDGDGPRFIFHAETTDKLLVVGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEA 658

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           +I    V+    KLLV SS G+ FIV E++++A TR GK  L V    K ++   VTGD 
Sbjct: 659 EIHDLLVHTPGRKLLVASSAGDGFIVPENDVLAQTRSGKQVLNVKDGVKTQVCKPVTGDA 718

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD   F + +GL+W D AGR   
Sbjct: 719 VAVVGENRKVLVFMLDELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWKDPAGR--T 776

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R+E  L  W+GKR G G + P+GFPR   F
Sbjct: 777 RTEAALDEWIGKRAGSGRMAPRGFPRDNTF 806


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/757 (37%), Positives = 448/757 (59%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++++ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTSSIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  
Sbjct: 61  LKSTAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ S+ +L E I GPDFPT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA W +E        IVV+ +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGSLRMRAVWELEHGD-----IVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++     P V  LDGIL 
Sbjct: 296 SDHENPTRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSLDGILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RR+ + RR S+R++ ++RR+ IL+G L+AYLNIDE+I IIR E+ PK  ++ RF 
Sbjct: 356 QWLKFRRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQALMQRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL L+LR+L KLEE +I+ E D L  E+E ++  L S  +    I  E+  +
Sbjct: 416 ISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKEREWLEKTLGSDARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   +  + M    PITVV+S +GWIR+ K H +D + 
Sbjct: 476 AEKYGD-----DRRSPLASREEARAFSELELMTAD-PITVVLSEKGWIRAAKGHDMDPAT 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DH 660
               + D+  + L+ S  G  F+   +E+    R GK  L + +  K+   V +      
Sbjct: 590 DGLMMGDNEQRCLLASDAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           VA V    +LL+F +  +P +SRGKG ++ +        ++  +      K  +GLT + 
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEYVVATAVLKDDDGLT-VW 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       +L  + G+RG  G+ +P+GF R  + 
Sbjct: 709 AGKRHLTLKRAELDHYRGERGRRGNKLPRGFQRVERM 745


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 401/765 (52%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  +G+     + K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ IL  +D++ VDF++ +++   EP V P+K PNLL NGTSGIAVGMAT++  H
Sbjct: 126 RLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A  A IDN  I I++L++YII PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 186 NLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGI-IYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+G     I+VTEIPY V K+ +I + +EL+   +I  + +IRDES      V++
Sbjct: 245 KVAFEEIGN-RNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L  G  PQ + L  I+  ++ HR E++ R
Sbjct: 304 ELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKG-RPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           R+ + ++    R  IL+G +        +D+ I+IIR+   P   K  +++ F L++ Q 
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E   ++     ++ +L +  + +  I  E+ EVKE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT   E+  +      +  I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRT---EIDYSGGEMSIEDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK Y L    +  G     G AIQ LI++  
Sbjct: 535 RAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEGSKTAKGRAIQNLINIEP 594

Query: 599 NQDIVTAFVYDSTC--------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I      +            +++++  G                G   +++  ++++
Sbjct: 595 DDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYSRPRTNGIHAIEIREDDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD-GGISDVICFKICE 707
                  G+  + +  +N K + F  ++   + R   GVR  S +D   +  +I     E
Sbjct: 655 LGARLTNGNSEIMIATKNGKCIRFPEEKARAVGRTSIGVRGISLEDNDEVIGMIVVNDME 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G+ ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIA 759


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/764 (34%), Positives = 421/764 (55%), Gaps = 33/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +G+   
Sbjct: 3   ENVNENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPD 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +++KSA +VGEV+GK HPHGD S+YD+  RLAQ F  RY L+ GQGNFGN+DGDS AA 
Sbjct: 63  KSYRKSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAP 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM+++A+ +L+ +++D VDF   Y+E + EP V PS+FPN+L NG++GIAVGMAT
Sbjct: 123 RYTEMRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E   A +  I+N +I IE+L++ I GPDFPTG II+  ++ I+++Y+ GRG 
Sbjct: 183 NMAPHNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIIL-GKQGIIDAYKTGRGK 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRAR  +EE  +G + IV+TEIPYQV K+ LI KIA+L+  K I  + +IRD S+   
Sbjct: 242 IQVRARAEIEE-HKGRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKT 300

Query: 310 RIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            I +     R  +P++++ +++  + M+  F +    L  G  P+V+ L  I+K ++ H+
Sbjct: 301 GIKIDIDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNGE-PKVLNLKEIIKYYVDHQ 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           R V+ RR+ F ++  + R  I++GL IA  NID II I+R      + K      F LT+
Sbjct: 360 RNVVRRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFGLTD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++R+R L  LE  +++ E  +L+    K+ S+L + K   N I  E+ E+KE 
Sbjct: 420 IQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSILENKKLLDNTIIEELEEIKEK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           +S       RRT        +     + +IE+E + + ++  G+I        +  +   
Sbjct: 480 YSD-----LRRTVLA---PDEGDIDSEDLIEEEDVVITLTEFGYIKRMPEGTYKPQRRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +SAL  +E D +K      T D IL  +  G+ Y+L A  +   S +  G AI  L++
Sbjct: 532 TGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESSRQAKGTAIINLLN 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ +         D    L++ +  G       SE     + G   + ++  + +  
Sbjct: 592 LEGDEFVTAVIPVRNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIG 651

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL- 709
           V   +G D + +V +N   + FS   +  M R   GV+    K+    +V+ F+I +   
Sbjct: 652 VRLTSGRDEIMIVTKNGMAIRFSESDVRNMGRTAMGVKSIDLKND--DEVVSFEIPQDDK 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +   + +           R GVG L  K   +SGK +S+
Sbjct: 710 YLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATEKSGKLVSA 753



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 12/211 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A +    +++    V+ +  G I+        K     L A+   EGD+L   
Sbjct: 593 EGDEFVTAVIPVRNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIGV 652

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 D I++++ +G A      ++ +       ++  IDL ++ ++V+  +      L
Sbjct: 653 RLTSGRDEIMIVTKNGMAIRFSESDVRNMGRTAMGVKS-IDLKNDDEVVSFEIPQDDKYL 711

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           LV+S  G   + + +E     R G   L   + EK    +   V    D + ++  +  +
Sbjct: 712 LVISENGFGKMTKMTEYRKQNRAGVGLLTYKATEKSGKLVSAKVIDKSDEIMIITVSGII 771

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +    + I  M R   GV+L + KD  +  V
Sbjct: 772 IRIGCEGISVMGRHTTGVKLMNIKDSEVVSV 802


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/757 (35%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A   L+DNP   ++ L+ +I GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLKMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  RRE + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+P  VMV RF+
Sbjct: 356 EWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPGKVMVERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E D L  E++K++ LL S ++    +  E+   
Sbjct: 416 ISETQAEAILELKLRHLAKLEEFKLRAEQDELAIERDKLELLLGSERRLNTLLKKELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E +    A  ++ +   EP+TV++S++GW+R+ K H VD++ 
Sbjct: 476 AEKYGD-----DRRTPLVERAS-AVALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD         +  + + LST G+ Y L A  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+    ++I   + GK  L V     +    K+     D
Sbjct: 590 RHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTVPEGGLVMAPQKIGSPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G    + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFMVMAAIIPQGQYVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPADLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/745 (35%), Positives = 446/745 (59%), Gaps = 25/745 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+
Sbjct: 63  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN+
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R+RA W
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
             E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   R+V+ 
Sbjct: 243 TKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR+ + R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILEL 417

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +        
Sbjct: 418 KLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD-----D 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 473 RRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 531

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           +   +   ++ + T G++Y +    L S RG GE +   + L     +    +     KL
Sbjct: 532 VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKL 591

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLI 672
           L+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + +  ++L+
Sbjct: 592 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLM 651

Query: 673 FSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           F +D +P++S+GKG ++ +         D G++ +        LT I    R       +
Sbjct: 652 FPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEE 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L   +G+RG  G+ + +G  R  + 
Sbjct: 711 LQKVVGERGRRGT-LMRGLQRIDRI 734


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 411/858 (47%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKL------LV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T                + 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|332534567|ref|ZP_08410402.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/822 (31%), Positives = 406/822 (49%), Gaps = 90/822 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T +   +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+  
Sbjct: 2   TDLANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM +++  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 122 YTEVRMAKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    LALI NP+++I +L++YI GPDFPT  I +  ++ I ++Y  GRG  
Sbjct: 182 IPPHNLTEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAI-INGKKGIEQAYLTGRGKV 240

Query: 251 RVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +RAR  +E +   G   I+V EIPYQV K+RLIEKIAEL+  K+I  +  +RDES +D 
Sbjct: 241 YMRARADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L   + P+   L  +L+E++ HRR
Sbjct: 301 MRIVIEIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQ-PKCFNLKEMLEEFIIHRR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R   L+GL IA  NID II +IR    P                
Sbjct: 360 EVVTRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGN 419

Query: 417 -------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                       ++ ++E Q  AIL+LRL  L  LE  +I +E 
Sbjct: 420 VQGMLEKAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEY 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             LL    ++  +L + ++    I  E+ E+KE +        RRT   E++ A      
Sbjct: 480 QALLELIAELLYILATPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISL 531

Query: 512 QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+++          +      SA   K+ D ++  L A+T D I
Sbjct: 532 EDLITEENVVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTI 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  ST G+ Y L    L   S    G+ I  L+ L  ++ I        Y     + + +
Sbjct: 592 LCFSTAGRLYWLKVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDKYIFMAT 651

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           + G       +        G   + ++  + +  V    G + + +  +  K++ F   +
Sbjct: 652 AFGTVKKTPLTAYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAE 711

Query: 678 -------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                                    +  M R   GVR     D      +     +G   
Sbjct: 712 ETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRVVSLIVPKTDGA-I 770

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      Y +           R   G +  K   R+G  + +
Sbjct: 771 LTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGA 812



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 37/249 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           E      A L      ++    + +  G ++     +          A++  +GDSL   
Sbjct: 627 EADERITAILPVREYAEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNDGDSLIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----------------------LLSGRGHGEAIQL 592
                ++ I+L +  GK                                  R  G     
Sbjct: 687 DITDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATG 746

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-- 646
           +  I +  +Q +V+  V  +   +L V+  G     +  +  + +R   G   +KVS   
Sbjct: 747 VRGIKMADDQRVVSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERN 806

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V     D + ++     L+   ++++  + R  +GV L    D     V+  + 
Sbjct: 807 GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDE--EQVVGLQR 864

Query: 706 CEGLTWIDS 714
            E +   +S
Sbjct: 865 IEEIEVTES 873


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 395/763 (51%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +    + V  V L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+   
Sbjct: 2   DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSARIVGEV+GK HPHGD+SVYD+ VRLAQ F  RYPL+ G GNFG++DGDSAAA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++   +L  +D++ VDF   Y+    EP V PSK PNLL NG++GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  + LID P+ S+E+++  I GPDFPTG  I+  RE I+++Y  GRG 
Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIM-GREGILKAYATGRGS 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++R+   VE + +G   IVVTEIPYQV K+R+IE IAEL   + I  +  +RDES    
Sbjct: 241 VKMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++      ++PD+++  ++  + ++  F + M  L  G  P+V+ L  +L+ +L H+R
Sbjct: 301 LRIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGH-PRVLSLLQVLQYYLGHQR 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR  F +     R  IL+GLLIA  +IDE+I  IR     +  K  +++ F LT+ 
Sbjct: 360 QVITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDK 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I+ E   L      + S+L   ++    +  E+ E K+ F
Sbjct: 420 QAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRF 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT              + MI  E + + ++ RG+++               
Sbjct: 480 GD-----VRRTQLA---ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLID 595
            +  +  K+ D++   L+      +L  +  G+ Y L A  +    S    G A   ++ 
Sbjct: 532 GIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILP 591

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + +      D       L + +  G     E +E     R G   + +   + +  
Sbjct: 592 LSTGEKVNALIDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAK 651

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGL 709
           V    G   + +  +    + F+   +  M R  +GVR  S   G    VI   +     
Sbjct: 652 VRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAPG--DRVIGADVLAPDC 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +   + +  N     +  RGG G+   K  P++G  + 
Sbjct: 710 QVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITPKTGVIVG 752



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 14/213 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
            A +     +      + +  G ++  +           L A+   EGD L      +  
Sbjct: 599 NALIDLDQADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISLIEGDHLAKVRLTNGK 658

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            RI+L +  G A      ++     +   ++  I L     ++ A V    C++L VS +
Sbjct: 659 QRIILATKLGMAICFNESDVRPMGRNTRGVRG-ISLAPGDRVIGADVLAPDCQVLTVSEE 717

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSID 676
           G              R GK         K  ++V V        + ++  N  ++   I+
Sbjct: 718 GFGKRNNMDAYKIQLRGGKGAKNFKITPKTGVIVGVEVVREDQELMLITTNGIVIRTDIE 777

Query: 677 QIPE-MSRGK-GVRLQSYK-DGGISDVICFKIC 706
            I     R   GV++Q  + D  ++ +    + 
Sbjct: 778 SIGIKKGRNTSGVKIQKLEGDDKVAALDTITVD 810


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/762 (32%), Positives = 407/762 (53%), Gaps = 32/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  ++ L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  ++I  + D+RDES      
Sbjct: 240 IQAKAHIGEVDN-RKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIRN    D  +  +V+ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E          + ++    + V +S RG+I+                +
Sbjct: 478 PRATEISSQGVIEFR-------VEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLN 597
             +  +E D+++    + T D +L  +  GK ++L   ++    S    G AI  LI + 
Sbjct: 531 MGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVT 590

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        + +   LL+ ++KG        E  A    G   + +++ +++   V
Sbjct: 591 QDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAV 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
           + T +  + +     + + F + ++    R   GV+      G   +V+   +  EG   
Sbjct: 651 ETTEEKDILLATRMGQSIRFPVSELRTSLRASGGVKAIVLSKG--DEVVSMDVAQEGTLV 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I        +           R G G +  K   ++G+ ++S
Sbjct: 709 ITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 18/217 (8%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                A L       +   ++ +N+G I+              L A+     D L  A+ 
Sbjct: 592 DERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVE 651

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 ILL +  G++   P   L +       ++ ++ L+   ++V+  V      ++ 
Sbjct: 652 TTEEKDILLATRMGQSIRFPVSELRTSLRASGGVKAIV-LSKGDEVVSMDVAQEGTLVIT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLI 672
           V+  G   +    E     R G   +       + E +   V    D + ++  +  +  
Sbjct: 711 VTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSETDQMMLISADGMVTR 770

Query: 673 FSIDQ------IPEMSRGK-GVRLQSYKDGGISDVIC 702
             + +      IP M R   GVR+   ++G     + 
Sbjct: 771 TQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/761 (33%), Positives = 419/761 (55%), Gaps = 32/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ +  V++  +L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM EMG+     
Sbjct: 1   MKEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYPL+ GQGNFG+IDGDSAAA RY
Sbjct: 61  YKKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RMT++AE +L  +D+D VDF   Y+    EPVV P++ PN+L NGTSGIAVGMAT+I
Sbjct: 121 TEVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + +IDNP  + E++L +I GPDFPT GI +  ++ I+++Y+ G+G  +
Sbjct: 181 PPHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGI-IYGKDEILKAYKTGKGVIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+   E    G   +VVTE+PYQV K+ LIEKIA L   K+I  + D+RDES  D   
Sbjct: 240 VRAKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + D+++  ++  + ME  + +N+  +   + P+ + L  +L+++L HR+ V
Sbjct: 300 IVIELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNK-PKTLTLRDLLEQFLEHRKVV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++  + R+ IL+GL+ A  NIDE++A+I   +N  + K  +++RF L++ Q 
Sbjct: 359 VIRRTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RL  L  LE  ++++E    L   E   S+LN+       I  E+ ++K  +  
Sbjct: 419 QAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT     S        + +I  + + V +S +G+I+          K      
Sbjct: 479 E-----RRTQIVNSSE---EINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGK 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNH 598
           +     + D +K  L       ++  +  G+ + L    L        G+ I  LI L+ 
Sbjct: 531 TGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLISLDK 590

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           ++ +        +D    + + + +G        +  ++ R G   +K+   +++     
Sbjct: 591 DEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSL-DAFSSGRSGIIAIKLRDGDEIVDASL 649

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWI 712
           ++  D + +     K + F+  ++  M R   GV+  +        V+  +  +G    +
Sbjct: 650 ISKNDSIFISTRKGKCIQFNSSEVRNMGRNATGVKGITLTKD--DKVVSMEAVKGDPLIL 707

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               + + +S       +  RGG G  + K   R+G+ + +
Sbjct: 708 TVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTERTGEIVGA 748



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 14/216 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFKEGDSLK 552
              +      A +     +++    + +  G ++     +       + A+  ++GD + 
Sbjct: 586 ISLDKDEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIAIKLRDGDEIV 645

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A      D I + +  GK     +  + +   +   ++  I L  +  +V+        
Sbjct: 646 DASLISKNDSIFISTRKGKCIQFNSSEVRNMGRNATGVKG-ITLTKDDKVVSMEAVKGDP 704

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGDHVAVVGEN 667
            +L V++KG       ++    +R GK  +K+      + E +        D V ++ ++
Sbjct: 705 LILTVTTKGFGKSSLITDYRIQSRGGKG-IKLSKVTERTGEIVGARQVKLEDDVMLISKS 763

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS-DVI 701
            K++  S+  IP + R  +GV+L    D  IS DVI
Sbjct: 764 SKVIRLSVSDIPILGRDTQGVKLMGLDDEIISFDVI 799


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/758 (32%), Positives = 407/758 (53%), Gaps = 29/758 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I  +Y  G+G   
Sbjct: 181 PPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 240 LRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R+   ++++ ++F L+ ++T F  NM  +  G VP+++ L  I+  ++ H++EV
Sbjct: 300 FVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 359 IVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ EVK  ++ 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYAD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +      R T   +     +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 479 A------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGI 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                   D ++  +   T D +L  +  G+ Y L A  +        G  I  L+ L+ 
Sbjct: 532 QGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDE 591

Query: 599 NQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T         +       + +G       SE     + G   + +   +++  V+
Sbjct: 592 GETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVL 651

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +   + V +       + F ++ +  M R   GVR  + ++G    V   +I  G   +
Sbjct: 652 LIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGD-KVVGASRIVNGQEVL 710

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               + Y +           RGG G        ++G  
Sbjct: 711 IITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPL 748



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +            + +G ++              L A++ KE D L 
Sbjct: 589 LDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     + +++ +  G +       + +       ++  ++L     +V A    +  
Sbjct: 649 NVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRG-VNLREGDKVVGASRIVNGQ 707

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG     E SE     R GK      +   +    +LV     + + V+ +  
Sbjct: 708 EVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLARLVTINGNEDIMVITDTG 767

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++        + ++   + E
Sbjct: 768 VIIRTNVANISQTGRSTMGVKVMRL--DQEAKIVTVALVE 805



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 562 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINARKEDVANKYFFFTTQQG 618

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT+  E S               D+      + E E + +  +  G+        +R
Sbjct: 619 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIG-TRTGYSVRFKVNAVR 677

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+
Sbjct: 678 NMGRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 737

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      +    ++V++  G       + I    R   G   +++  E K
Sbjct: 738 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 797

Query: 650 MKLVVKVTGD 659
           +  V  V  +
Sbjct: 798 IVTVALVEQE 807


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 412/858 (48%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 447/749 (59%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ L+DNP+  +++L+E++ GPD+PT   I+     + + Y+ GRG  R+R
Sbjct: 187 HNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLKKVYKSGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL  RR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIRNE+ PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENPKAELMSRFELSVIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+ E D L  E++ ++ LL S ++    I  EI+   E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K GD+ 
Sbjct: 479 --DRRSPLVERAE-AKALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    + D  
Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V  + K+     ++    D + V+    
Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++ +        ++  +S +I     E +T I +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +DL  + G+RG  G+++P+G     + 
Sbjct: 715 KASDLDNFRGERGRRGTMLPRGLQNVTRL 743


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 446/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSLMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 412/858 (48%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/757 (36%), Positives = 441/757 (58%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S TLV    + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTES-TLVPYADEQLPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  
Sbjct: 60  LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++   E++L  + +  V++   ++    EP V P++ P +L NGT+GIA
Sbjct: 120 SFAAMRYTEARLSAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+ +A + L++NP+    +L E+I GPD PT   I+  +  + + Y 
Sbjct: 180 VGMATDIPPHNLREVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQKVYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  EE       IV+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGRGSMKMRAVWRKEEGD-----IVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  +R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL+
Sbjct: 295 SDHENPIRLVIVPRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSLREILQ 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL+ R   + RR   R+  ++RR+ +L GLLIA+LN+DE+I IIR ED PK  ++ RF 
Sbjct: 355 DWLSFRMVTVRRRLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHPKQKLMERFE 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E+Q + IL+ RLR L +LEE +I+ E   L  E++++  +L+S ++    I  E+  V
Sbjct: 415 LSEDQANYILDTRLRQLARLEEMKIRDEQQKLEKERDELQKILDSARRLKTLIKKELLAV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +     RR+   E S   +A  +  +I  EP+TVV+S +GWIRS K H +D SA
Sbjct: 475 VDEFGDA-----RRSPMVERSE-AQAFSETELISSEPVTVVLSEKGWIRSAKGHDIDPSA 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS ++A    ++   LLL + G++Y LP   L S RG GE +   ++       
Sbjct: 529 LSYKAGDSFRVAARGKSSQATLLLDSTGRSYALPTHTLPSARGQGEPVTGRLNPPSGAVF 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659
               + D T K+L+ S  G  FI   S++    R GK  L V +  ++            
Sbjct: 589 EGLLMGDDTQKVLLASDAGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDAS 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
            +A      +LL F + ++PE++RGKG ++ +     +       V      E  T  + 
Sbjct: 649 WLAAFSNEGRLLAFPVSELPELARGKGNKIINIPAARVQSREEFVVALVVFNEKSTIKVF 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R       DL  +LG+RG  G+ +P+GF +    
Sbjct: 709 SGKRHLGLKYKDLEHYLGERGRRGNKLPRGFQKVDSV 745


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/764 (34%), Positives = 427/764 (55%), Gaps = 33/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H V EI +A + LIDNP+  + ++L+++ GPDFPTGGI +  +  I E+Y  GRG 
Sbjct: 182 NIPPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGI-IYGKNGIREAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  + 
Sbjct: 241 IKVRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  +     P++  L  +L  +++HR+
Sbjct: 300 IRVVIELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKE-PKIFTLLELLGLFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+++IR+   P   K  ++S+F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   LL E E ++S+L S       I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541
           S       +R T  E     ++   + +I  E + V +S+RG+++ +   + +       
Sbjct: 479 ST------KRLTAIE--EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGK 530

Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
              + +  + D ++    + T D I+ ++  G+ Y L    +   S    G+A+  LI+L
Sbjct: 531 GKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLINL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    +   +  G       SE       G   + +   +++   
Sbjct: 591 APDEKIMATITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRNVGVRAINLDENDELVTA 650

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEG 708
             ++     + VV      + FS+D + E+ R  +GV    +K     +         E 
Sbjct: 651 KIISPAIQQILVVTYEGMCVRFSVDNVREIGRVARGVTAIKFKIPKDYVIGATVVS-NEN 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        +  RGG G +  K   ++GK + 
Sbjct: 710 EEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLTSKTGKLVG 753


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/778 (30%), Positives = 390/778 (50%), Gaps = 39/778 (5%)

Query: 3   VDNISN---SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           VD +SN    N     +++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+
Sbjct: 18  VDVVSNGGAENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIY 77

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +F K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNFG
Sbjct: 78  AMYDGGYRPDRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFG 137

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +   D AAA RYTE +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG
Sbjct: 138 SPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNG 197

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVES 235
           +SGIAVGMAT+IP HN++E+ E     + NP  + ++    L+  I GPDFPTG  I+  
Sbjct: 198 SSGIAVGMATNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQIL-G 256

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAELI   ++
Sbjct: 257 TKGIEDAYRTGRGSITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIAELIKDGKV 315

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D+RDE S    + ++    R   P +++ +++  + ++  F  NM  +  G VP+ 
Sbjct: 316 TGIADLRDETSGRTGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRT 374

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D
Sbjct: 375 LSLDAFVRHWVDHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTAD 434

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    + E Q  AILN++LR L  LE  +I+   D L+    + ++++ S  +Q
Sbjct: 435 EARSGLMEFLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQ 494

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I+ E+ E+   +        RRT    +   +     + +I +E + V I+  G+I+
Sbjct: 495 REIISEELGEIVNRYGDE-----RRTQI--MYGYNGDMSMEDLIPEEEVVVTITRGGYIK 547

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581
                           +     +  D ++      T   IL  +  G+ Y      L   
Sbjct: 548 RTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEA 607

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ I  L++    + I        Y+    L++ +  G       S+   N   G
Sbjct: 608 GRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAG 667

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
              + +   +++     V+  D + +V  N   L F  D   +  M R   GV    +++
Sbjct: 668 LIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPMGRSTSGVTGMKFRE 727

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G    +    + EG          Y +  +     +  R G G  V K     G  + 
Sbjct: 728 GD-ELISANVVTEGSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVG 784



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 16/224 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHA 557
                 ++    E     V+ +  G ++  +    D +      A++ +EGD +  A   
Sbjct: 626 EHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAGLIAINLREGDEVVSAFTV 685

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLL 615
              D ILL+S +G +    A +  S R  G +   +  +      ++++A V      + 
Sbjct: 686 SAQDDILLVSRNGMSLRFHADD-ASLRPMGRSTSGVTGMKFREGDELISANVVTEGSFVF 744

Query: 616 VVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           VV+  G A      E     R G   K    V     +   + V   D V VV  + K++
Sbjct: 745 VVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVV 804

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +++++P   R   GV     K G    +I     +     DS
Sbjct: 805 RSNVNEVPAKGRDTMGVIF--AKPGKGDSIIGVARNQDRQLDDS 846


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 426/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   +  E V+   LR   E+ YL Y++  I +RA+P + DG KPV RRI +AMSE+G
Sbjct: 1   MTDVIDMSLEGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L  GA +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LHAGAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  V    VD+   ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A L LIDNP+  + +L+ Y+ GPD+PT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA + +E        IV++ +P+QV   +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKMRAVFTIESGD-----IVISALPHQVSGGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  F +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGLKKILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  +  R+ +L GLLIA+LNIDE+I IIRN D PK  ++SRF 
Sbjct: 356 EWLVFRHSTVRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPKAELISRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +A+L L+LR L KLEE +I+ E   L  E+ K++ LL+S ++    +  E+   
Sbjct: 416 LSVKQAEAVLELKLRHLAKLEEMRIRGEQGELNTERHKLEQLLSSDRRLATLVKKELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F        RR+   E     KA  ++ ++  E +TVV+S +GW R  K H VD   
Sbjct: 476 AEKFGDE-----RRSPIIERKE-AKALTEKELMPNEAVTVVLSQQGWARCAKGHDVDAKG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K  D  K A    +    + + + G+++ L A  L S R  GE +     L   +  
Sbjct: 530 LSYKASDGYKDAAEGRSNCPAVFIDSSGRSFALDAHTLPSARSQGEPLTTRFTLAAGKTF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
           V A + D + + L+ S  G  FI + S++I+  + GK  L + +   +     VT    D
Sbjct: 590 VHALMADDSQQYLLSSDAGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           H  ++    ++LIF +  +P +S+GKG +L +     +        ++          + 
Sbjct: 650 HCLIISNEGRMLIFPLSSLPLLSKGKGNKLMNIPSARVKSREEFVQMLTIVPEGQSVTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G  +P+G  R    
Sbjct: 710 AGKRKLTLKPADLEHYKGERGRRGFKLPRGLQRVDTL 746


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/765 (30%), Positives = 398/765 (52%), Gaps = 39/765 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + L   ++  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G      + K
Sbjct: 5   DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE 
Sbjct: 65  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG++GIAVGMAT+IP H
Sbjct: 125 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A   L++NP+       E  +EYI GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 185 NLRELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIV-GTQGIKDAYTTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE G     IV+TE+PYQV    LI  IAE +   ++  +  I DE S    
Sbjct: 244 RMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++  S ++T F  NM  +  G VP+ + LD +L+ ++AH+ 
Sbjct: 303 MRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVAHQI 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR  +     +  ++   ++ E 
Sbjct: 362 EVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEV 421

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I  EL  + A    +  +L S  +Q   +  E++E+ + +
Sbjct: 422 QADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRAIVRDELKEIVDKY 481

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RR+       A     ++ +I +E + V I++ G+         +S +    
Sbjct: 482 GD-----DRRSQII---AATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGK 533

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     K+ D ++      T D IL  +  G+ Y L A  L   S    G+ +  L++ 
Sbjct: 534 GVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEF 593

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ + +G       S+  +    G   + ++  +K+   
Sbjct: 594 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKIC-EG 708
              +  D + +V E  + + FS D   +  M R   GV+   ++  G   ++   +  +G
Sbjct: 654 SLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRFR--GDDHLLAMTVVRDG 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +  +     +  RGGVG +  K  P+ GK + +
Sbjct: 712 SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGA 756



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 32/217 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +    + +      A++  EGD L  A
Sbjct: 594 QPEERIAQVIQIQSYEDAPYLVLATVQGRVKKSRLSDYESARSGGLIAINLNEGDKLIGA 653

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G++    A +    R  G +   +  +    +  ++   V     
Sbjct: 654 SLCSNEDDLLLVSEEGQSIRFSADD-EQLRPMGRSTAGVKGMRFRGDDHLLAMTVVRDGS 712

Query: 613 KLLVVSSKGNAFIVEESE-------------IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            LLV ++ G        E                N ++GK    ++ +           D
Sbjct: 713 YLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNPKRGKLIGALAVD---------NDD 763

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            +  +     ++   ++QI   SR   GVRL + +DG
Sbjct: 764 QIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDG 800


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/757 (38%), Positives = 450/757 (59%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +NT+ ++ ++ +SL+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTETNTIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  
Sbjct: 61  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  AA+ L+D P+ ++ +L E I GPD+PT   I+ SRE I + Y 
Sbjct: 181 VGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIAQIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRGG R+RA W  E        IVVT +P+Q   SR++E+IA+ + AK++P++ D+RDE
Sbjct: 241 TGRGGLRMRAVWDTEHGD-----IVVTALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D LM  +F  +D+E  + +N+N++ +   P V  LDGILK
Sbjct: 296 SDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSLDGILK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL  RRE + RR  +R++ + RR+ IL+G L AYLNIDE+I IIR E+ PK  +++RF 
Sbjct: 356 QWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQALIARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR+L KLEE +I+ E D L  E++ ++  L S  +    I  E+  +
Sbjct: 416 LSDIQAEAILELKLRNLAKLEEMKIRGEQDELEKERDWLEKTLGSEARLKTLIKKELTAI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+       A   +  + M    PITVV+S +GWIR+ K H +D ++
Sbjct: 476 AEKYGD-----DRRSPLASREEAQAFSELELMTAD-PITVVLSEKGWIRAAKGHDMDPAS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS K+A    +    +++ + G+AYTL   NL S RG GE +   I+       
Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660
               + DS  + L+ S  G  FI    E+    R GK  L + +  ++     +  D   
Sbjct: 590 DGLMMGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQW 649

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           VA V    +LL+F +  +P +SRGKG ++ +        ++  +      +  +GLT + 
Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEFMIATAVLRENDGLT-VW 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      ++L  + G+RG  G+ +P+GF R  + 
Sbjct: 709 AGKRHLTLKRSELEHYHGERGRRGNKLPRGFQRVERM 745


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/762 (32%), Positives = 415/762 (54%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    + L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RR++ +M E+        +K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L  +++D VDF   ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A + LIDN     + +I++++  I GPDFPTG  I+  R  I E+Y  GRG  
Sbjct: 187 NIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLR-GIKEAYTTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA   +E +  G   IVV+E+PY V K++LIEKIAEL+  KRI  + D+RDES  +  
Sbjct: 246 KVRAVTEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    + ++ ++++  ++  + ++  F +NM  L   + P+V+ +  +L+ +LAH+ +
Sbjct: 306 RVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQ-PKVLNILQMLQYYLAHQED 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GLLIA  NIDEII IIR     +  K  ++ RF L++ Q
Sbjct: 365 VVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI+++RLR+L  LE  +++SE + LLA+ E  + +L   K+    I  EI  V++ + 
Sbjct: 425 AQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVVEDKYK 484

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT F      D     + +I+KE I + ++  G+I+                
Sbjct: 485 D-----DRRTGF----MQDDDMEDEDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKG 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   + D ++  + + T + I   +  G+ YT+    +   S    G AI  L+ L 
Sbjct: 536 IKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQ 595

Query: 598 HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I      ++      L +V+  G     + +      + G   + ++ ++++  V 
Sbjct: 596 PDEKISAIIPSEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEVK 655

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
              G D + +V +    +  +   I  + RG  GVR      G   +VI  ++  +G   
Sbjct: 656 VTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNTG--DEVIGMQLASQGEYL 713

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +   Y +        +  RGG G +  K   ++GK + +
Sbjct: 714 LLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNEKTGKLVGA 755



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 12/215 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      A +       +    +++  G I+  + +  D      L+A++  E D L   
Sbjct: 595 QPDEKISAIIPSEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDELIEV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              H  D ++++S  G    +   ++ +       ++ +  LN   +++   +      L
Sbjct: 655 KVTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGM-RLNTGDEVIGMQLASQGEYL 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKL 670
           L+VS  G     + SE     R GK  +     EK   +     V  D  + ++     +
Sbjct: 714 LLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNEKTGKLVGAKLVNEDREILLITTEGII 773

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +   +  I  + R   GV+L +      + +    
Sbjct: 774 IRIEVSGISILGRTASGVKLMNVDRESDTKIASIA 808


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/749 (36%), Positives = 430/749 (57%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L+   E+ YL Y++  I +RA+P++ DG KPV RRII+AMSE+GL   + +KK
Sbjct: 9   EGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGLSAASKYKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R++  A+L+L  + +  VD+   ++    EP V P++ PN+L NG +GIAVGMAT IP 
Sbjct: 129 SRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+DNP  S+  L E+I GPDFPT   I+  R  + + Y  G GG R+R
Sbjct: 189 HNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGGLRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+  E        I++T +PYQV  S+++E+IA  + AK++P++ED+RDES  +   R+
Sbjct: 249 ARYEREGTD-----IIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEHPTRL 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  +L EWL  R E 
Sbjct: 304 VIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLGEWLHFRTET 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR  D+PKPV++ RF LT+ Q +AI
Sbjct: 364 VRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPVLMERFGLTDTQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR L KLEE +I+ E D L  E++ ++  L S  +    I  EI+   E F     
Sbjct: 424 LELKLRHLAKLEEMKIRGEQDELEKERDSLEKTLGSAARLKRLIREEIQADAEKF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R +      A +A  +  ++  EP+TVV+S  GW+R+ K H VD   L +K GD+ 
Sbjct: 479 -GDERRSPIVARAAAQAMDESELVPTEPLTVVLSKMGWVRAAKGHDVDAEGLSYKSGDAF 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A    +    + + + G+ YTLPA  L S RG GE +   +        V   +   +
Sbjct: 538 LSAARGRSNQPAVFIDSTGRTYTLPAHTLPSARGQGEPLSGRLSPPDGARFVGVMMGAPS 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAVVGENR 668
              L+ +  G  F+    ++ +  + GK  L V +  K+     V  +  D +A      
Sbjct: 598 DLFLLSTDYGYGFVCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
            LL+  ++++P M+RGKG ++ +        ++  ++ +   +  E LT + +  +    
Sbjct: 658 HLLVTRLNELPRMARGKGNKIINVPSAKLKTREEWVAAITLVQDGEPLTVV-AGKKFKTM 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              ++  +  +RG  G  +P+GF +  + 
Sbjct: 717 KGPEVDEYAAERGKRGKKLPRGFQKVDEL 745


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/755 (35%), Positives = 447/755 (59%), Gaps = 25/755 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 4   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 64  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 124 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 183

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+     I + Y  G
Sbjct: 184 MATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  R+RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES 
Sbjct: 244 RGSVRMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESD 298

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW
Sbjct: 299 HENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           LA RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++
Sbjct: 359 LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGIS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   +
Sbjct: 419 ETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSD 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L+
Sbjct: 479 AYGD-----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GDS K A+   +   ++ + T G++Y +    L S RG GE +   + L     +  
Sbjct: 533 YKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEH 592

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV- 663
             +     KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  + 
Sbjct: 593 MLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLL 652

Query: 664 -VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715
            +    ++L+F +D +P++S+GKG ++ +         D G++ +        LT I   
Sbjct: 653 AITLAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVG 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 712 KRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 745


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/767 (32%), Positives = 399/767 (52%), Gaps = 33/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  +   +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NPE +   L+E + GPDFPTGGI++  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVM-GKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRVSIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
           +H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  +S
Sbjct: 356 SHQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLIDGYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKDILAHEERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F  +      R T  +V        +  +  +E + V ++  G+I+           
Sbjct: 476 QTKFGDA------RRTELQVGDVTNLEDEDLIE-EEDVIVTLTRNGYIKRVPQAEFKAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  ++  + D +   +   T D +L  +  GK Y +    +     +  G  +  
Sbjct: 529 RGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+    ++ I T         +S   L  V+  G       +E       G   L +  +
Sbjct: 589 LLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVVKRTAVNEFSNIRTNGLRALTLRDD 648

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V    G   + +  ++   + F+ D +  M R   GVR    +  G   V    +
Sbjct: 649 DEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIMGRSAAGVRGIRLR-DGDVVVGSDVV 707

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +    + Y +        +  RGG G        ++G    
Sbjct: 708 NPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKNGALAG 754



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 18/225 (8%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              E +     ++  G ++    +         L AL  ++ D +        T  IL+ 
Sbjct: 607 EAGESKDYLFFVTRLGVVKRTAVNEFSNIRTNGLRALTLRDDDEVLSVQITDGTQSILIA 666

Query: 567 STDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + DG +  +T     ++     G      I L     +V + V +    +LV++ KG   
Sbjct: 667 TKDGYSVRFTEDDVRIMGRSAAGVRG---IRLRDGDVVVGSDVVNPNDNVLVITEKGYGK 723

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
               SE     R GK    V+  EK   +  +  + GD  + V      ++ F+   + +
Sbjct: 724 QTPVSEYPIKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIMVTTTQGVMIRFTASSVSQ 783

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
             R   GVRL   +DG  + V      +    + SA  S N S  
Sbjct: 784 TGRATLGVRLIRLEDG--AKVATLAKVDHEEVVVSAETSQNVSRE 826



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 10/173 (5%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
           R D   L   + +     ++ +  G+        +R +   +  +  +  ++GD +  + 
Sbjct: 646 RDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIMGRSAAGVRGIRLRDGDVVVGSD 705

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             +  D +L+++  G     P          G+ I+ +     N  +    +      ++
Sbjct: 706 VVNPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIM 765

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           V +++G       S +    R   G   +++    K+  + KV  + V V  E
Sbjct: 766 VTTTQGVMIRFTASSVSQTGRATLGVRLIRLEDGAKVATLAKVDHEEVVVSAE 818


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/784 (30%), Positives = 395/784 (50%), Gaps = 45/784 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  +  +    + ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 2   SDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG   
Sbjct: 62  DGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
               AA RYTE +M  +A  +++ +DE++VDF+D Y+ ++ EP + P++FPNLL NG+ G
Sbjct: 122 NLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSEG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRES 238
           IAVGMAT IP HN++E+       +++P+ S E+LL    E I GPDFPTG  I+  R  
Sbjct: 182 IAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATIL-GRRG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  +
Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DIRDE S    + ++    R     +++ +++  + ++  FP NM  L  G VP+ + L
Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           DG ++ W+ H+ +V+ RRS FR++    R+ IL+G L A   +D +IA+IR         
Sbjct: 359 DGFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEAR 418

Query: 418 VSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                L    E Q DAIL L+LR L  LE  +I+ E + L A+   +  ++ S ++Q   
Sbjct: 419 GGLMGLLGVDEVQADAILALQLRRLAALERLKIQQEAEELQAKVADLKDIIASPERQRGI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           ++ E+ E+ E +        RRT        D     + +I +E + V I+  G+     
Sbjct: 479 VSDELAEIVEKYGDE-----RRTRIV---PFDGEMSMEDLIPEEEVVVTITRSGYAKRTR 530

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               RS       +     +E D +       T   +L  +  G+ Y   A  L  G   
Sbjct: 531 TDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRD 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     ++I        Y+    L++ + +G       SE  +N   G   
Sbjct: 591 AKGQHVANLLAFQPGEEIAQVMELKDYEQADFLVLATKRGLVKKTRLSEYDSNRSGGVIA 650

Query: 642 LKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSY 692
           + +  +     +++     +  G  + +V  + +   F      +    R   GV    +
Sbjct: 651 INLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHASDDVLRPTGRATSGVTGMRF 710

Query: 693 KDGG---ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           +DG      DV+  +  +   ++ + G  Y +  N        RGG+G  V       G 
Sbjct: 711 RDGDWLLAMDVVDPQWTDADLFVVTEG-GYAKRTNVAEYPTKGRGGLGVKVANLVEERGD 769

Query: 750 FLSS 753
            + +
Sbjct: 770 LVGA 773



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 20/208 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRI 563
            E+    V+ + RG ++  +    D +      A++ +E      D L  A        +
Sbjct: 617 YEQADFLVLATKRGLVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDL 676

Query: 564 LLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSS 619
           LL+S  G++    A  ++L   G   +    +       ++   V D       L VV+ 
Sbjct: 677 LLVSRHGQSARFHASDDVLRPTGRATSGVTGMRFRDGDWLLAMDVVDPQWTDADLFVVTE 736

Query: 620 KGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
            G A     +E     R G   K    V     +   +     D V  + E+ K++   +
Sbjct: 737 GGYAKRTNVAEYPTKGRGGLGVKVANLVEERGDLVGALVTAPSDEVLCIMESGKVVRSRV 796

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           D++    R  +GV      DG     + 
Sbjct: 797 DEVSVTGRNTQGVTFAKPDDGDRIIAVA 824


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/766 (30%), Positives = 409/766 (53%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++YI GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+ A  ++D +I II++    +  +  +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +IL ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++E+
Sbjct: 418 FTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K+ +         R +   +   D     + +I  E I V ++N G+I+           
Sbjct: 478 KDKYDDP------RMSEVNLYE-DLDIDNEDLIPVEDIVVTVTNNGYIKRMNLDEYKLQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V +S +   + D ++      T D  L  +  G+ + L    L SG  +  G  I  
Sbjct: 531 RGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVN 590

Query: 593 LIDLNHNQD---IVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++    +      T   +D     L  V+ +G       +      + G   + +  ++
Sbjct: 591 YLNFQPGEKLASFTTIKDFDAEDHYLFFVTKRGIVKRTHINNYKNIRQNGIIAISLREDD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++ +     G  H+ +   N K + F    I E+ R   GVR     D    +++ F + 
Sbjct: 651 ELLVTKSTNGHKHILLGASNGKAIHFLETDIREIGRTATGVRGMDIPDD--EEIVGFAVV 708

Query: 707 EGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G+    +      Y +  +     L  RGG G        ++GK 
Sbjct: 709 DGIEDDILVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKNGKL 754



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 14/221 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T  +    ++     ++ RG ++    ++        + A+  +E D L +    +    
Sbjct: 604 TTIKDFDAEDHYLFFVTKRGIVKRTHINNYKNIRQNGIIAISLREDDELLVTKSTNGHKH 663

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKG 621
           ILL +++GKA      ++         ++ + D+  +++IV   V D     +LV++  G
Sbjct: 664 ILLGASNGKAIHFLETDIREIGRTATGVRGM-DIPDDEEIVGFAVVDGIEDDILVITENG 722

Query: 622 NAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  +E     R GK    +       K+K + KVT D  + VV +    +   IDQ
Sbjct: 723 YGKRTSITEYRLQNRGGKGVKTLNVTDKNGKLKTLRKVTNDEDIIVVSDRGITIRMPIDQ 782

Query: 678 IPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
           I +  R   GVR+ + K D  +S +      E    + S  
Sbjct: 783 ISQTKRATQGVRIITLKGDQKVSTIAIVDHQEPEEEVVSNE 823


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 409/762 (53%), Gaps = 32/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEVDN-RKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR   N D  +  +++ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAEFDFSAIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + ++++  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                       E          + ++    + V +S RG+I+                +
Sbjct: 478 PRATEISNQGVIEFRE-------EDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLN 597
             +  +E D+++    + T D +L  +  GK ++L   ++    S    G AI  LI + 
Sbjct: 531 MGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVT 590

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        + +   LL+ ++KG        E  A    G   + +++ +++   V
Sbjct: 591 QDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAV 650

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
           + T +  + +     + + F + ++    R   GV+      G   +V+   +  EG   
Sbjct: 651 ETTEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSKG--DEVVSMDVAQEGTLV 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I        +           R G G +  K   ++G+ ++S
Sbjct: 709 ITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 18/217 (8%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                A L       +   ++ +N+G I+              L A+     D L  A+ 
Sbjct: 592 DERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVE 651

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 ILL +  G++   P   L +       ++ ++ L+   ++V+  V      ++ 
Sbjct: 652 TTEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIV-LSKGDEVVSMDVAQEGTLVIT 710

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLI 672
           V+  G   +    E     R G   +       + E +   V    D + ++  +  +  
Sbjct: 711 VTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSETDQMMLISADGMVTR 770

Query: 673 FSIDQ------IPEMSRGK-GVRLQSYKDGGISDVIC 702
             + +      IP M R   GVR+   ++G     + 
Sbjct: 771 TQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/749 (35%), Positives = 442/749 (59%), Gaps = 23/749 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ S++ LL+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L +LEE +I+ E + L  E++++ ++L S ++    +  E++   + F   
Sbjct: 416 AILELKLRHLARLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKSGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   +  + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEA 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  FI   +++++  R GK  + +     +   + +    D +  +   
Sbjct: 590 DDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLIIENESDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDV--ICFKICEGLTWIDSAGRSYNR 721
            ++L+F +  +PE+S+GKG ++ S        G+  +  +     +    I    R    
Sbjct: 650 GRMLMFPVSDLPELSKGKGNKIISIPSAEAAKGVDGLAHLFLLPPQSTLTIHVGKRKIKL 709

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +L   +G+RG  GS + +G  R  + 
Sbjct: 710 RPEELQKVVGERGRRGS-LMRGLQRIDRV 737


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-FLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN    D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G +R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + F+   +  M R   GVR  + ++     V    +    
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYV-VGSGILGADD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     ++  G ++              L AL  K+GD L   
Sbjct: 595 EKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T   G++ +       ++  I+L  +  +V + +  +  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRG-INLREHDYVVGSGILGADDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       SE     R GK      +   +     + +  + + V V+  +  +
Sbjct: 714 LVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F ID + +  R   GVRL    D      +     E
Sbjct: 774 IRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTE 811



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+        +R++   +  +  ++ +E D +  +      D++L++S  G     P
Sbjct: 667 THLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYVVGSGILGADDQVLVISEKGYGKRTP 726

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A         G+ I+       N  +    + +S   ++V+++ G        ++    R
Sbjct: 727 ASEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDDVSQTGR 786

Query: 637 K--GKTFLKVSSEEKM--KLVVKVTGDH 660
              G   +KVS + ++    VV    + 
Sbjct: 787 STMGVRLIKVSDDSQVASLTVVPTEEEQ 814


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  +K V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-FLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ IIRN    D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G +R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G +    + FS + +  M R   GVR  + ++     V    +    
Sbjct: 653 NVLTTDGKQNILIGTHLGYAVTFSENDVRAMGRTAAGVRGINLRENDYV-VGSGVLGADD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  K+GD L   
Sbjct: 595 EKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  N  +V + V  +  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFSENDVRAMGRTAAGVRG-INLRENDYVVGSGVLGADDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       +E     R GK      +   +     + +  + + V V+  +  +
Sbjct: 714 LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F I+ + +  R   GVRL    DG     +     E
Sbjct: 774 IRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTE 811



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+        +R++   +  +  ++ +E D +  +      D++L++S  G     P
Sbjct: 667 THLGYAVTFSENDVRAMGRTAAGVRGINLRENDYVVGSGVLGADDQVLVISEKGYGKRTP 726

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           A         G+ I+       N  +    + +S   ++V+++ G     +  ++    R
Sbjct: 727 AAEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFKIEDVSQTGR 786

Query: 637 K--GKTFLKVSSEEKMKLVVKVTGDH 660
              G   +KV+   ++  +  V  + 
Sbjct: 787 STMGVRLIKVNDGSQVASLTIVPTEE 812


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/762 (31%), Positives = 415/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+     +KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGD  AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E IL  +D++ VD +  +++  +EP V P++ PNLL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L+ ++  PDFPTGGI +   + + ++   GRG  ++R 
Sbjct: 185 NLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGI-IYGYDGVKDAMHTGRGRVKIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EEV +G  CI+V E+PYQV K+ +I+K A+LI  K++  +  IRDES  +   +++
Sbjct: 244 RVRLEEV-KGRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G  PQ++ +  ++  ++ HR +V+ R
Sbjct: 303 ILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKG-RPQLLNVKEMIHYFVEHRHDVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA+IR   N ++ +  ++ RF L+E Q  AI
Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKRFELSEIQARAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E ++L+A    +  +L   +++ + I  E+ E+KE +     
Sbjct: 422 VEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRMDIIKEELIEIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIADEQVVITISHAGYIKRTPITEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             ++ D L+          +L  +  GK + +    +   S    G AIQ LI++  + +
Sbjct: 534 TTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTSKGRAIQNLINIEQDDN 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +       G   + +   + +   
Sbjct: 594 VKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPRTNGINAITIREGDTLLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TGD HV +  ++ K + F   +   M R   GVR     D     +    + +    
Sbjct: 654 KLTTGDSHVMLGLKSGKAIRFDEAKTRAMGRNASGVRGIRLADDNDEVIGMVAVNDMDSN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +        RGG G        ++G  ++
Sbjct: 714 ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTEKTGGLVA 755



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 19/249 (7%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       + + D        Q + ++E I     ++ + +G ++        
Sbjct: 573 GSRTSKGRAIQNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYS 632

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 ++A+  +EGD+L  A        ++L    GKA         +   +   ++ +
Sbjct: 633 RPRTNGINAITIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAMGRNASGVRGI 692

Query: 594 -IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +  ++++ I    V D    +LVVS KG        +     R GK    +S  EK   
Sbjct: 693 RLADDNDEVIGMVAVNDMDSNILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTEKTGG 752

Query: 653 VVK----VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +V        D + ++ ++   +   +  +  M R   GVRL + K       +     E
Sbjct: 753 LVALKNVTDDDGLMIINKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQE 812

Query: 708 GLTWIDSAG 716
             + I+  G
Sbjct: 813 EDSEINEDG 821


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/766 (33%), Positives = 420/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++    E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ MSE+ 
Sbjct: 1   MTDTKEF-ENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELN 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G ++KKSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RYPL+ GQGNFGNIDGD 
Sbjct: 60  LVSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +MT++AE +L+ +++D V+F   ++ +  EP + PS+FPNLL NG+SGIAV
Sbjct: 120 AAAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+ +  +  ID+ +ISI  L E I GPDFPTG +I+  R+ I ++Y+ 
Sbjct: 180 GMATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIM-GRDGINKAYKT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA   + E  +G   I++TE+PYQV KS L+ KIAEL   K I  +  I D S
Sbjct: 239 GRGKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSS 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    ++    +  + ++++  ++  + ++  + +    L  G  PQ++ L  +++ ++
Sbjct: 299 NKRGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNG-RPQILNLKELIRYYV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422
            H+ EV+ RR+ F +   + R  I++GL IA  NID +I IIR+    K V       FS
Sbjct: 358 DHQVEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFS 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL++RL+ L  LE  ++++E D LL + ++   +L +       I  E+ E+
Sbjct: 418 LTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534
           K+ +      G  R T  + S +D     + +I++E + + ++  G+I        +  K
Sbjct: 478 KDKY------GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQFGYIKRMPEGTYKPQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                ++AL  KE D +K      T DR+L  +  GK Y L A  +        G A+  
Sbjct: 530 RGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L++L+  + I +      +D    LL+V+ KG        E     + G   +K+  ++K
Sbjct: 590 LLNLDKGEKITSVINVEEFDPDHYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDK 649

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  V  V GD  + +V +  K + FS D++ +  R   GV+  +  +     V    + +
Sbjct: 650 LISVHLVRGDEEIILVTKEGKSIRFSTDELRDQGRNTMGVKSMNLDEDDTI-VSSDIVGD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G   +  +   + +           RGG G    K   ++GK  ++
Sbjct: 709 GNYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAA 754



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 13/209 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +       +       + ++++ +G I+   +          L  +  ++ D L     
Sbjct: 597 EKITSVINVEEFDPDHYL-LMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHL 655

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               + I+L++ +GK+       L     +   ++ + +L+ +  IV++ +      LL 
Sbjct: 656 VRGDEEIILVTKEGKSIRFSTDELRDQGRNTMGVKSM-NLDEDDTIVSSDIVGDGNYLLT 714

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLI 672
           VS  G   + E  E     R GK        EK   V   +     D + ++ ++  ++ 
Sbjct: 715 VSENGFGKLTELKEYRPQNRGGKGIFTYKISEKTGKVSAASVVNKSDDIMLIADSGIIIR 774

Query: 673 FSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             ID I   SR   GV+L +  D  I  +
Sbjct: 775 LLIDDISVTSRNTMGVKLMNLNDSKIVAI 803


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 412/767 (53%), Gaps = 37/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++  ++     +S+  +++  YL YA+S I  RA+PD+RDG KPVHRR + +MSEMG
Sbjct: 1   MSDTSKTID-----ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           + +  A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DGDS
Sbjct: 56  VHYNKAYKKSARIVGDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDS 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R++++++ +L  +D+D VDF + Y+    EP V P++ P LL NGTSGIAV
Sbjct: 116 AAAMRYTEIRLSKISDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI  A   +ID P    E +L ++ GPDFPT GII+ S++ I  +YR 
Sbjct: 176 GMATNIPPHNITEIISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKD-IQTAYRT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RAR  +EE   G   I+V EIPY V K+ +IEKIA+L+  K+I  + D+RDES
Sbjct: 235 GRGSITIRARVLIEETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    +  + D+++  ++  + ++T F  NM  +  G+ PQ + L  IL+E+L
Sbjct: 295 DKDGIRVVIELKKGENVDVVLNRLYKFTQLQTSFGFNMVAIVDGK-PQTLSLREILEEFL 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR  V+ RR+ F ++  + R+ IL+GL+ A  NIDE+I  I+        K  + ++F 
Sbjct: 354 KHRVTVVTRRTQFLLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQFG 413

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +IL +RL+ L  LE  ++K E +N+L + E   S+L +     + I  E+++V
Sbjct: 414 FTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMMSVIKDELQDV 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLK 534
            + +        RRT   E++        + +I      V +++ G+I+        + K
Sbjct: 474 LDKYGD-----DRRT---EIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVAQK 525

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                 +    K+ D ++  +      R++  +  GK + L    L   +    G  I  
Sbjct: 526 RGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQRDAKGRHISN 585

Query: 593 LIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + +     +      L   +  G        E  +  R G   +K+   ++
Sbjct: 586 LLTLEPEEFVASVLALPAETDGKYLFFATKSGTIKKTSLEEFKS-GRSGIVAIKLRDGDE 644

Query: 650 MKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +    +    D V +  +  K + FS      M R   GVR  + +     +++  ++  
Sbjct: 645 ILTADITTDEDTVILSTKAGKTIQFSSTDARPMGRSTSGVRGITLE--ARDELMSMEVLT 702

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G    +      Y +        +  RGG G  + +  P++G  + +
Sbjct: 703 GAPYILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSPKTGFVVGA 749



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 18/223 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFKEGDSLKIAL 555
           E      + L              +  G I+       KS    + A+  ++GD +  A 
Sbjct: 590 EPEEFVASVLALPAETDGKYLFFATKSGTIKKTSLEEFKSGRSGIVAIKLRDGDEILTAD 649

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCK 613
                D ++L +  GK       +    R  G +   +  I L    ++++  V      
Sbjct: 650 ITTDEDTVILSTKAGKTIQ---FSSTDARPMGRSTSGVRGITLEARDELMSMEVLTGAPY 706

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRK 669
           +L V+S G        E    TR GK         K   VV        D V ++  + K
Sbjct: 707 ILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSPKTGFVVGAKQVTDNDDVMIITRSAK 766

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +   +  I +M R   GV+L    D G  D+I F + +  T 
Sbjct: 767 TIRTEVQGISKMGRDTMGVKLM---DTGDDDIIAFAVIKEGTI 806


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/843 (31%), Positives = 416/843 (49%), Gaps = 115/843 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EMGL F  +++KS
Sbjct: 15  GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP+I+++K++E I GPDFPTGGII+     +  +Y  GRG   +RA+
Sbjct: 195 LGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GLSGVRAAYETGRGSIIMRAK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+RDES  D   V+  
Sbjct: 254 VEIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R EV+ RR
Sbjct: 314 LKKDVVAEVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREEVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R  +L GL +A  NIDEIIA+IR    P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIK 432

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+ +  +      +L 
Sbjct: 433 LIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILA 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  ++E F+       RRT F   S        + +I  E + V +S+
Sbjct: 493 SRVRIMCIVKDELSALREEFATP-----RRTVFGFGSA---EMESEDLIAPEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  K+ D +     A+T   +L  S+ G  Y     
Sbjct: 545 SGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 605 RLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
            +   R GK  +K+  E+++  V   T  D V +   N + + F +  +     R   GV
Sbjct: 665 FVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGV 724

Query: 688 RLQSY-------------------------------------KDGGISDVICFKICEG-- 708
           R  +                                       D  + D++     +G  
Sbjct: 725 RGINLAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGA 784

Query: 709 ----------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKF 750
                              +  +   Y +  +     +  RGG G     P      GK 
Sbjct: 785 ETELTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKL 844

Query: 751 LSS 753
           +++
Sbjct: 845 VAA 847



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 81/299 (27%), Gaps = 75/299 (25%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
                 GR       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQV 668

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR--------- 584
                 A+   E D +         D ++L + +G+    P  ++   +GR         
Sbjct: 669 NRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGVRGIN 728

Query: 585 -GHGEAIQLLIDLNH------------------------NQDIVTAFVYDST-------- 611
              G+ +  +  L H                        + D+      D          
Sbjct: 729 LAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGAETEL 788

Query: 612 ------------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVV 654
                         LL VS  G        E   + R GK              K+    
Sbjct: 789 TDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAF 848

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLT 710
            V   D + +V +  +L+   ++ I    R  KGV +  + K   +  V      E  T
Sbjct: 849 PVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERISEPEDDT 907


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/800 (32%), Positives = 423/800 (52%), Gaps = 64/800 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + + T  + N+  V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM  +G 
Sbjct: 5   TENPTHFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEVLGN 64

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++DGDSA
Sbjct: 65  DYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSA 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM +++  +L+ ++++ VDF D Y+  +SEP+V P++ PNLLANG+SGIAVG
Sbjct: 125 AAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ EA L  IDN +I+I++LLE + GPDFPT GI +     I ++Y  G
Sbjct: 185 MATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGI-INGASGIRQAYETG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   +R+   +E  G     IVVTE+PYQV K++LI KIA+L+  KRI  +  +RDES 
Sbjct: 244 KGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLRDESD 303

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R   P++++ +++ L++M+T F +NM  +    +P++M L  IL+ ++A
Sbjct: 304 KDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAI-DKGMPKLMTLKNILEAFIA 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV------- 416
           HRR+V+ RRS F +        +L+GL +A  NID+II +I+   N    K V       
Sbjct: 363 HRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAKTWQ 422

Query: 417 ----------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                       M   + L++ QV AIL+L+L  L  LE+ +I 
Sbjct: 423 GSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKNKIF 482

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E + LL   + +  +L + ++    I  E+ +++  ++ +           ++      
Sbjct: 483 DEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANA--------RMTQILEHKID 534

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTT 560
              + +I +E   V +S+ G++++                 A   K+ D +     A++ 
Sbjct: 535 LTLEDLITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSH 594

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLL 615
           D +L  S+ GK Y L    L   S    G+ I  L+ L   +    I+T   +D    + 
Sbjct: 595 DTVLCFSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDENHFVF 654

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674
           +V+S G       +      + G   +++   +++  V   +G+H + +   N K + F 
Sbjct: 655 MVTSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFK 714

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
              +  + R   GVR     +     V    + +    + +  + + +           R
Sbjct: 715 ESDVRVVGRTAIGVRGIKLANAD-KVVSLIVVNQDNPILTTTEKGFGKRTRLNEYRSQAR 773

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG+G +  K   R+GK + +
Sbjct: 774 GGLGVISIKTSDRNGKVVGA 793



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L  +  ++     ++++ G  +        K     + A+  K+ D L   
Sbjct: 633 EKEEIINAILTVSKFDENHFVFMVTSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGV 692

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S +GK+      ++         ++  I L +   +V+  V +    +
Sbjct: 693 EITSGEHDIMLFSANGKSIRFKESDVRVVGRTAIGVRG-IKLANADKVVSLIVVNQDNPI 751

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  + KG       +E  +  R G   + + + ++    +  +     D + ++     L
Sbjct: 752 LTTTEKGFGKRTRLNEYRSQARGGLGVISIKTSDRNGKVVGAIQITDEDEMMLISNKGTL 811

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +      +  + R  +GV L +   G
Sbjct: 812 VRARAVDVSIIGRNTQGVTLINIIKG 837


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/767 (32%), Positives = 401/767 (52%), Gaps = 36/767 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +MSE+G    
Sbjct: 2   DEHIFDKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG+IDGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T+++  +L  + +D VDF   ++E + EPVV PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+ +A L +IDN      + +I++L+E + GPDFPTG  I+  +  I E+YR
Sbjct: 182 NIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATIL-GKSGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +  +  G   I++TE+PY V K+ LI+KIAEL+  K+I  +  I D+
Sbjct: 241 TGRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQ 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V     R ++ ++++  ++  + ++  F +NM  L     P+V+ L  +L  +
Sbjct: 301 SNMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNE-PKVLNLHQMLTYY 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H+ EV+ RR+ + +     R  IL+GLLIA  NIDE+I+IIR  +     K  ++ RF
Sbjct: 360 LEHQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIERF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q  AI+++RLR+L  LE  +I++E + L+   +++ ++L   K+    I  E+  
Sbjct: 420 GLSDAQSQAIVDMRLRTLTGLEREKIEAEYNELMKRIDELKAILADNKKLLMVIREELSI 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + + +        RRT        +     + MI  E   + ++N G+I+          
Sbjct: 480 IMDKYGD-----DRRTAIG---YDEFDISMEDMIPNESTVITMTNLGYIKRMTPDNFRSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
                 +  +   + D ++  L   T + +L  +  G+ Y L A  +        G AI 
Sbjct: 532 NRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKAYEIPEAGRTARGTAIV 591

Query: 592 LLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ L   + I      D       L + + +G        E     + G   + +   +
Sbjct: 592 NLLTLQAGEKISAIVPVDGIKDNEYLFMATKQGIVKKTYCKEYANIRKTGIQAITLRDND 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI- 705
           ++  V        + +V +    + F    +    R   GV   +  +G   +V+  ++ 
Sbjct: 652 ELIEVKATDSTKEIFLVTKYGYCIRFKETDVRPTGRSAMGVIGMNILEG--DEVVGMQLN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G T +  +     +        L  RGG G    K   +SG  + 
Sbjct: 710 TQGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKSGNVIG 756



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 18/259 (6%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------ 531
           + +         R T        +      A +    I+      + + +G ++      
Sbjct: 574 KAYEIPEAGRTARGTAIVNLLTLQAGEKISAIVPVDGIKDNEYLFMATKQGIVKKTYCKE 633

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   + A+  ++ D L       +T  I L++  G        ++         + 
Sbjct: 634 YANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRPTGRSAMGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
            +  L  ++ +V   +      LL+VS  G        E     R GK        EK  
Sbjct: 694 GMNILEGDE-VVGMQLNTQGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKSG 752

Query: 650 -MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +  V  V+    + ++     ++   +  I  + R   GV+L +  DG     +     
Sbjct: 753 NVIGVKAVSNTREIMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKVAKVRE 812

Query: 707 EGLTWIDSAGRSYNRSEND 725
           E ++    +    N    D
Sbjct: 813 EDVSDETESEEKNNEDSED 831


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 447/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  +   
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITLA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 412/858 (48%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 24/210 (11%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            V+  +        +  G   + +  D   
Sbjct: 900 KVVSVERISDADSDEENGNGGDAAPEDDTP 929


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/853 (30%), Positives = 407/853 (47%), Gaps = 110/853 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+          +++ VS+   +++ YL YA+S I  RA+PD RDG KPVHRRI+++
Sbjct: 1   MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E G      + KSAR+VG+VIGK HPHGDQS+YD++VR+AQ F  R PLI GQGNFG+
Sbjct: 61  MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AAYRYTEAR+T+ A  +L  +D+D VDF+  Y+  ++EP V P+KFPNLL NG 
Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALIDNP ++I++L+  + GPDFPTGG+I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y LGRG   +R +  +E + +    +++TEIPYQV K+ ++E+IAEL+  K+I  + D
Sbjct: 240 AAYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    R    D+++  ++  + ++T F +NM  L     P++M L  +
Sbjct: 300 LRDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVAL-DSGRPRIMHLKDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
           L  ++  R  V+ RR+ F +     R  IL GL IA  NIDE+I +IR    P       
Sbjct: 359 LAIFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTL 418

Query: 414 ----------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 +        L+  Q  AIL+LRL+ L  L   +I+ EL
Sbjct: 419 MSRDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E      +L S ++    I  E+ EVK  F+       RRT   E    +     
Sbjct: 479 DKLAGEIADYLDILRSRERVLGIIKTELAEVKAEFATP-----RRTVIME---QEGEVED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E + V +S+ G+++          +      + +  ++ D +     A T   +
Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G+ Y      L        G+A+  ++ L   + I T               ++
Sbjct: 591 LFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             ++ GN    + S+ +   R G   +K+   E +  V   T  D V + G   + + F 
Sbjct: 651 FATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFP 710

Query: 675 IDQIPE-MSRGK-GVRLQSYKD-GGISDVICFKICEGLT--------------------- 710
           +  +     R   GVR  +  +   +  +   +  E  +                     
Sbjct: 711 VTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEE 770

Query: 711 ------------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                                          +  +   Y +  +        RGG G + 
Sbjct: 771 PAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVA 830

Query: 741 PKGFPRSGKFLSS 753
                R+G  ++S
Sbjct: 831 MSVNNRNGNLVAS 843



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L VS  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 797 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVT 856

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  +L+   ++ I    R                VI F   E    +  
Sbjct: 857 DKGQLIRCPVEGIRIAGRST------------QGVIVFDTAEDEHVVSV 893


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/777 (30%), Positives = 394/777 (50%), Gaps = 54/777 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++ +     + +  L+  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MSDNESTA--RIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VG+VIGK HPHGDQ+VYD+LVR+AQ F  R  L+ G GNFG++D D 
Sbjct: 59  LTADRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDP 118

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+T  A+  +LQ +D + VDF   Y+    EP+V P++ P LL NG+SGIA
Sbjct: 119 PAAMRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIA 178

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALI NP ++  +L+++I  PDFPTG +I+  +E I E+Y 
Sbjct: 179 VGMATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIM-GQEGIREAYT 237

Query: 245 LGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GR    +R    VE + +        I++TE+PYQ  K+ +IEKIAEL+  K++  + D
Sbjct: 238 TGRSSITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIAD 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES      V+    R   P +++ +++  + ++  F +NM  +  G  P+ + L   
Sbjct: 298 IRDESDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGE-PRTLTLRDA 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           L+ +L  R EV+ RR+ + +Q  + R  +L+G L+A   +D +IA+IR   +    +  +
Sbjct: 357 LQAFLDFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +   L+E Q D IL ++LR L  LE  +I++E ++L+ +   +  +L   ++    I+ 
Sbjct: 417 QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISE 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++++K  F+       RR+  C     D       +IE     + ++ +G+I+      
Sbjct: 477 ELQQLKARFASP-----RRSRLC---LEDGELGTDDLIENRETVIFLTEQGYIKRMGLEE 528

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                  +   +    KE D+++      + D IL  +  G  YTLPA  +   S    G
Sbjct: 529 FQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLPAHQIPQGSRAARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            AI  L+ +   + + +      +     L++++  G       S        G   + +
Sbjct: 589 SAIVQLLPITREERVTSMVPVSQFSDDEYLVMLTRGGYIKKTALSAFANVRSNGLIAISL 648

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
              ++++ V +  + D V +       + F  D   +  + R  +GVR  +   G   D+
Sbjct: 649 EENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPLGRATRGVRAITLNAG--DDI 706

Query: 701 ICFKICEGLTWIDS---------------AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +   I    + + +                     +           RGG G +  K
Sbjct: 707 VSMDIISAESVMAAEREGEKLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATK 763


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 445/749 (59%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 7   DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ +E++L  + +   D+   ++   +EP + P++ P++L NG +GIAVGMAT IP 
Sbjct: 127 SRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN +E+  AA+ L+DNP   +++L+ ++ GPD+PT   I+     + + Y  GRG  R+R
Sbjct: 187 HNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  +   RI
Sbjct: 247 AIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  F +N+N+L +   P+V  L  I+ EWL  RR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GLL AYLN+DE+I IIRNE+ PK  ++SRF L+  Q DAI
Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENPKAELMSRFDLSVIQADAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L KLEE +I+SE D L  E++ +D LL S ++    I  EI+   E +     
Sbjct: 422 LEIKLRQLAKLEEIKIRSEQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKYGD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  ++ +I  E ITVV+S +GWIR  K + VD ++L +K GD+ 
Sbjct: 479 --DRRSPLVERAE-AKALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +    +L+ +DG++Y L + +L S R  GE +   ++L    ++    + D  
Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
              L+ S  G  FI + +++++  + GK  L V  + K+     ++    D + V+    
Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I  +P++ +GKG ++ +        ++  +S +I     E +T I +  R    
Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +DL  + G+RG  G+++P+G     + 
Sbjct: 715 KASDLDNFRGERGRRGTMLPRGLQNVTRL 743


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E      E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         + G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRV 737


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/757 (35%), Positives = 442/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+   +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +EL+L  + +  V++   ++    EPVV P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + L+DNP   ++ L+ ++ GPD+PT   I+  R+ I + Y 
Sbjct: 181 VGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIRKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA W  E+       IV+T +P+Q   ++++E+IA  ++AK++P++ D+RDE
Sbjct: 241 TGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLKTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ RRE + RR  +R+  +  R+ IL+GLLIAYLNIDE+I IIR E++P  VM+ RF+
Sbjct: 356 EWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEPGRVMMERFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q +AIL L+LR L KLEE+++++E + L  E++K++ +L S ++    +  EI   
Sbjct: 416 ISEAQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLSTLLKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RRT   E +    A  ++ +   EP+TV++S++GW+R+ K H VD+  
Sbjct: 476 AEKYGD-----DRRTPLVERA-TAVALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+     H  +  + + LST G+ Y+L A  L S R  GE +     L   +++
Sbjct: 530 LSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLPSARSQGEPLTGRFALGAGEEV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + +     L+ S  G  F+ +  ++I   + GK  L V     +    K+     D
Sbjct: 590 RHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F ++ +P + +GKG +L S     +       V+   I +G +  + 
Sbjct: 650 LCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLF 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R       DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 AGKRKLTLKPADLDYYRGERGRRGAKLPRGLQRVDRI 746


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/747 (38%), Positives = 437/747 (58%), Gaps = 23/747 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N + + LR   E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   +  KKS
Sbjct: 6   NYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTEA
Sbjct: 66  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A+ +L  +D   VD+   ++    EP + P++ PNLL NG +GIAVGMAT IP H
Sbjct: 126 RLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA + LID PE ++E+L   I GPDFP    ++  RE +++ Y+ G G  R+RA
Sbjct: 186 NLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
           R+ +E+       IVVT +PYQV  ++L+E+IA  + AK++PL+ED+RDES  +   R+V
Sbjct: 246 RYELEDGN-----IVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + PK+R ++ + LM  +F  +D+E  + +N+N++ +   PQV  L  IL EWL+ R E +
Sbjct: 301 IMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSFRTETV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R+  +  R+ IL+GLL+A+L+IDE+IAIIR ED+PKPV+++RF LT+ Q +AIL
Sbjct: 361 RRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPVLMTRFGLTDLQAEAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRLR L +LEE +I+ E + L  E+ +++  L S  +    I  E+R+  E F  +   
Sbjct: 421 ELRLRHLARLEEIKIRGEQEALEQERARLERTLGSRAELDALIKQELRQDAEKFGDA--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R +     +A +A    A+I  EP+TVV+S +GWIRS K H VD + L ++ GD   
Sbjct: 478 ---RRSPIVARQASQALDTTALIASEPVTVVLSEKGWIRSAKGHEVDPATLSYRAGDGFL 534

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A    +T     L + G++Y+L   +L S RG GE +   ++       V         
Sbjct: 535 CAALGRSTQPAYFLDSTGRSYSLAVHDLPSARGQGEPLTGRLNPPPGAIFVAVLAGSEED 594

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRK 669
             L+ +  G  F+V+  E+ +  R GKT L V    K+   ++V    GD +A V    +
Sbjct: 595 WYLLATDGGYGFLVQLGELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGR 654

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRSE 723
           LL++  ++IP +++GKG +L       +         +            +  R+     
Sbjct: 655 LLVYPAEEIPRLNKGKGSKLIQIPPADLEARQDYLVAMAALPAGAALRATAGKRTLTLQP 714

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            DL  + G RG  G+ +P+GF R  + 
Sbjct: 715 ADLDHYRGSRGRRGNPLPRGFQRVERL 741


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/752 (36%), Positives = 444/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  V+F+  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++E LL+ + GPD+PT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  EE        V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKEE-----GEAVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE +I++E  +L  E++++ + L S ++    +  E++     +
Sbjct: 417 QAESILELKLRHLAKLEEVKIRAEQADLEKERDQLQATLASERKMNTLLKKELQADSASY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A    +   +  + + G++YTL   +L S RG GE +   +       +    
Sbjct: 531 AGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVV 664
           +     +LL+ S  G  FI   S++++  R GK  L +    ++   + V    D +  +
Sbjct: 591 MEPDDQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-----DGGISDVICFKICEGLTW-IDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G         +  G    +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  +  + 
Sbjct: 711 MLLRSEELQKFRADRGRRGTLLPRGLQKIDRV 742


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 445/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSEMAERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++  + +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNSLLRKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     I    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATIEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDENDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D  ++ +      +    I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIVNIPSAEAAKGDDSLAHLYVLP-PQSTLIIHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/857 (31%), Positives = 410/857 (47%), Gaps = 118/857 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKG--FPRSGKFLS 752
                       GK ++
Sbjct: 837 IRATDTLKTDEIGKLVA 853



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            LK     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TLKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 411/858 (47%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G G   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  I                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/752 (36%), Positives = 450/752 (59%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  ++++LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ L++NP+ S++ LL+++ GPDFPT   I+  R+ + + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E 
Sbjct: 357 FRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E  +L  E++++ +LL S ++  N I  EI+      
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQGDLAKERDQLQALLASERKLSNLIKKEIQ------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           S +   G  R +        KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 471 SDAQAYGDDRRSPLHERGEAKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   ++ + + G++Y L   ++ S RG GE +   +       I    
Sbjct: 531 AGDSFRAAAKGKSNQPVVFIDSTGRSYALDPISMPSARGQGEPLTGKLTPPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  F+   ++++A  R GK  + +    K    +++ G+   +  +
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S      S+       +     +    +    R 
Sbjct: 651 TAAGRMLLFPVSDLPQLSKGKGNKIVSISSADFSEGKDRLTWLYLLPPQASVTLYFGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                N+L  + G+RG  G+L+ +G  R  + 
Sbjct: 711 LVLRPNELQKYQGERGRKGTLL-RGLQRIDRI 741


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/778 (29%), Positives = 394/778 (50%), Gaps = 39/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D     N    + ++ + L+  ++  Y+ YA+S I  RA+P++RDG KPVHRRI++A
Sbjct: 1   MSDDTNGGDNLF--DRIEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G      + KSA+ V E +G  HPHGD ++YD+LVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDNGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE R+T +A  +++ + ED V F+  Y+ + SEP V PS+ PNLL NG+
Sbjct: 119 RGNDGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN+ E+ +A   L++NP      ++E  + ++ GPDFPT G+IV   
Sbjct: 179 GGIAVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIV-GE 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG  R+R +  +EE G     IV+TE+PYQV    L+  IAE +   ++ 
Sbjct: 238 KGIDDAYRTGRGSIRMRGKAEIEEEGS-RQVIVITELPYQVNPDNLVSSIAEQVRDGKLK 296

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            +  I DE S      ++    R   P +++ +++  S ++T F  NM  +  G VP+ +
Sbjct: 297 GISKIDDESSDRVGLRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTL 355

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +L  ++ H+ +V+ RR+ FR++  +    IL+GL+ A   +DE+IA+IRN    D 
Sbjct: 356 RLDQMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDI 415

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++   ++ E Q +AIL ++LR L  LE  +I  +L  L      ++ +L   ++Q 
Sbjct: 416 AREGLMDLLTVDEIQANAILAMQLRRLAALERQKIIDQLAELERIIADLEDILAKPERQR 475

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529
             +  E+ E+ E +        RRT     +       ++ +I +E + V I++ G+   
Sbjct: 476 AIVRDELAEIVEKYGDE-----RRTQIVSATG---DVSEEDLIARENVVVTITSTGYAKR 527

Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
                 R+ +     +     ++ D ++      T D +L  +  G+ Y L    L    
Sbjct: 528 TKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRLKTYELPEAT 587

Query: 584 -RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L++    + I        ++    L++ +++G       ++       G 
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQIQSFEDAPYLVLATAQGRVKKSRLTDYATTRSSGL 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDG 695
             + ++  +K+      +  D + +V E  + + F+ D   +  M R   GV    ++  
Sbjct: 648 IAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETLRPMGRATAGVYGMRFRGE 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +     +   ++ ++G  Y +           RGG+G +  K     GK + +
Sbjct: 708 DQLLAMTVVQEDSALFVATSG-GYGKRTPMEEYPAKGRGGLGVVAFKYQKSRGKLIGA 764



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++         + S  L A++  EGD L  A
Sbjct: 602 QPGEQIAQVIQIQSFEDAPYLVLATAQGRVKKSRLTDYATTRSSGLIAINLNEGDKLIGA 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D +LL+S +G+A    A +  + R  G A   +  +       ++   V     
Sbjct: 662 QLCSAEDDLLLVSEEGQAMRFTADD-ETLRPMGRATAGVYGMRFRGEDQLLAMTVVQEDS 720

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGDHVAVV-GENR 668
            L V +S G        E  A  R G   +      S  K+   + VT D   +      
Sbjct: 721 ALFVATSGGYGKRTPMEEYPAKGRGGLGVVAFKYQKSRGKLIGALTVTEDDEILAMTSAG 780

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            ++   ++QI E  R   GVRL     G     +
Sbjct: 781 GVIRTEVNQIRETGRSTMGVRLVDLDKGVELVAV 814


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/789 (30%), Positives = 393/789 (49%), Gaps = 67/789 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL   +   YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  D+   +KKSARI
Sbjct: 10  PISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D++ VDF   Y+  + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 IAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+ NPE ++++L+E I  PDFPT GI +     + E+YR GRG   +R R  V
Sbjct: 190 VVDACLALLKNPETTVDELIEIIPAPDFPTAGI-IYGTMGVKEAYRTGRGRVVMRGRTHV 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++ +G    +++ E+PYQV K  LIEKIAEL+  K+I  + D+RDES +    V+    
Sbjct: 249 EDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++ +++  + ++  F +NM  L  G+ P+++ L  +L+ +  HRREV+ RR+ 
Sbjct: 309 RGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFFGHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F +   + R  +L+GL +A  N+DE+IA+I+    P     S  S               
Sbjct: 368 FELGKAE-RGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLKRA 426

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 L++ Q   IL +RL+ L  LE+ +I +E   ++     
Sbjct: 427 AMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIAD 486

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L   ++    I  E+  +++ F         R+   E+    +    + +I  + +
Sbjct: 487 LLDILAKPERVTQMIVDELATIRQQFGD-----SCRS---EIVHNAQDLSLEDLITPQDV 538

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +S+ G+++S         +       A   KE D +     A+T D IL  S+ G+ 
Sbjct: 539 VVTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRV 598

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDL------NHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           Y L        +    A+Q             +Q  +    +D    + + +++G     
Sbjct: 599 YWLKYTK--CRKAAASAVQAYRQPLPAGRGREDQCHLPVKEFDENHFIFMATAQGTVKKT 656

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
              E     R G   + +   + +       G + + +V    K + F  + +  M R  
Sbjct: 657 ALVEFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNT 716

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GVR            +     +  T + +    Y +           RG  G       
Sbjct: 717 RGVRGMKLMPKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATS 776

Query: 745 PRSGKFLSS 753
            R+G  + +
Sbjct: 777 DRNGSVVGA 785



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 11/231 (4%)

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           + +    GR R   C +   +        +     TV  +    +         + A++ 
Sbjct: 617 YRQPLPAGRGREDQCHLPVKEFDENHFIFMATAQGTVKKTA--LVEFSNPRRAGIIAINL 674

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            EGD L  A   +  + I+L+S  GKA      ++ +   +   ++ +  +   + I   
Sbjct: 675 DEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMGRNTRGVRGMKLMPKQRVISLL 734

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEK-MKLVVKVTG-DHV 661
              D    +LV +  G       S+   + R  +G   +  S     +     V   D +
Sbjct: 735 IAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRNGSVVGARLVNDEDEI 794

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY----KDGGISDVICFKICE 707
            ++     L+   + +I E+ R   GV L +     K  G+  V+     +
Sbjct: 795 MLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDAD 845


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 406/765 (53%), Gaps = 30/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MDNQNQ--DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELG 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y+++  +AQ F  RY L+ G GNFG+IDGD 
Sbjct: 59  VFPDKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDR 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ +++D +D++  Y++ ++EPVV P++ P LL NG SGIAV
Sbjct: 119 PAAMRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ EI      L++NP++S+++L+  I GPDFPTGGII+  R  I+ +Y+ 
Sbjct: 179 GMTTNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKT 237

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  ++    G   I+++EIPY V K+ L++KIA+L   K +  +  I+DES
Sbjct: 238 GKGNIVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDES 297

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + +++ F +NM  +  G    V+ L  IL+ +L
Sbjct: 298 DQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPH-VLNLKQILQYYL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           AH+  ++ RR+ + ++  + R  I++GL IA  +IDEII IIR   N D  K  +++RF 
Sbjct: 357 AHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFG 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  +++ E  +LL + +    +L   ++    I  E+ ++
Sbjct: 417 LDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDI 476

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           ++ F        RRT   +      +   + +IEK+ + + +++ G+I+ + +    +  
Sbjct: 477 QKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQN 529

Query: 543 --------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                   +  +  D +   ++ +T D +L  +  GK Y+  +  +        G  I  
Sbjct: 530 RGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIIN 589

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + +         D+   L+ V+  G    +  SE     R G   L +   ++
Sbjct: 590 LVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDE 649

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G      +IF+ +++  M R   GVR    +      V    + +
Sbjct: 650 LSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVRGIKLRANDYV-VGSSIVDD 708

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RG +G        ++G  + 
Sbjct: 709 HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKNGPLVG 753


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/773 (32%), Positives = 405/773 (52%), Gaps = 35/773 (4%)

Query: 1   MGVDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +N +  N  +   N+  ++++  ++  YL YA+S I  RA+PD+RDG KPVHRR ++
Sbjct: 1   MSDENNTPENGEINHGNIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM  +       F KSAR+VG+VIGK HPHGD +VY++LVR+AQ F  RY L+ GQGNFG
Sbjct: 61  AMYSLNNYHNKPFLKSARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+AAA RYTE RM +++E +L+ +D+D VD++  Y++   EP V P+K PNLL NG
Sbjct: 121 SIDGDAAAAMRYTEIRMKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ EI  A   LIDN ++++ +L+++I GPDFPT G  +   E I
Sbjct: 181 SSGIAVGMATNIPPHNLTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAG-SIHGTEGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             +Y  GRG  ++RA+  +E  G+     IV+TE+PYQV K++LIEKIA+L+  K I  +
Sbjct: 240 KSAYHTGRGIIQIRAKVDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES+ +   V+    +     +++  ++  + ++  F +    +S G  P+VM L 
Sbjct: 300 SDIRDESSREGIRVVIDLKKGEIASVIVNRLYKATQLQVSFGIIFLSISNGS-PKVMNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L+ ++ HRREV+ RR+ F ++    R  IL+GL +A  NIDE++ I++  +     K 
Sbjct: 359 EMLECFIDHRREVVIRRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++SRFSL+E Q  AIL++RL+ L  LE  +I ++ + ++ E  +++ +L S       I
Sbjct: 419 KLISRFSLSEIQSQAILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSEDLIRGII 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E +E+ E +        RRT              + +++ E + V I+++G+I+    
Sbjct: 479 KTEFQEINENYGDE-----RRTAIV---AKADEIQIEDLVKNEDVLVTITHKGYIKRMTM 530

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
                 K     +      + D       A+T   IL  +  G  ++    N+  G    
Sbjct: 531 DTYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEGTRTA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDST-----CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            G  I  LI +     I                L+  + KG       ++     + G  
Sbjct: 591 KGRNIANLIPVPPGDKIKEIMCIPPEDEREGKYLMFATEKGLVKKSALTDYNNIKQSGLR 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            +KV   + +  V    G   V +   + K++ F       M R  +GV+  +  D    
Sbjct: 651 AIKVQDGDSVCSVRVSDGTKDVLLCSTSGKIIRFDESDARPMGRVSQGVKGINIDDD--E 708

Query: 699 DVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +I  + I + +  +      Y +           RGG G L  +   ++G+ 
Sbjct: 709 RIIGMELIDDSVEILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKNGEI 761



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 16/203 (7%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
           +   +      +    +  + +G ++              L A+  ++GDS+     +  
Sbjct: 609 EIMCIPPEDEREGKYLMFATEKGLVKKSALTDYNNIKQSGLRAIKVQDGDSVCSVRVSDG 668

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVV 617
           T  +LL ST GK       +    R  G   Q +  I+++ ++ I+   + D + ++L +
Sbjct: 669 TKDVLLCSTSGKIIRFDESD---ARPMGRVSQGVKGINIDDDERIIGMELIDDSVEILSI 725

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  G       S+    TR GK  L +   +   ++K +  V+  D + V+ +  +++  
Sbjct: 726 TENGYGKRTAASQYRKQTRGGKGILAMRLTDKNGEIKQIKPVSDKDDLMVITDKGQVVRT 785

Query: 674 SIDQIPEMSRGK-GVRLQSYKDG 695
            I  I  M R   GVR+   K+G
Sbjct: 786 KISGISLMGRATQGVRIIKLKEG 808



 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R +   S  +  ++  + + +        +  IL ++ +G      A         G+ I
Sbjct: 690 RPMGRVSQGVKGINIDDDERIIGMELIDDSVEILSITENGYGKRTAASQYRKQTRGGKGI 749

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE 648
             +   + N +I           L+V++ KG     + S I    R   G   +K+   E
Sbjct: 750 LAMRLTDKNGEIKQIKPVSDKDDLMVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGE 809

Query: 649 KMKLVVKV 656
            +  V K+
Sbjct: 810 SVVSVEKI 817


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/756 (36%), Positives = 441/756 (58%), Gaps = 25/756 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + +L   + + + L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL 
Sbjct: 5   ETPSLFANSGEQLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLS 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S 
Sbjct: 65  ATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSF 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ A+L+L  + +  VD+   ++    EP V P++ PN+L NG SGIAVG
Sbjct: 125 AAMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGGSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+     + + Y  G
Sbjct: 185 MATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELRKVYETG 244

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G  R RAR+  E        IVVT +P+QV  ++L+E+IA  I AK++P++ED+RDES 
Sbjct: 245 QGSIRARARYEREGDD-----IVVTALPHQVSGAKLLEQIASQIRAKKLPMVEDLRDESD 299

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + LM  +F  +D+E  + +NMNV+ +   PQV  L G+L EW
Sbjct: 300 HEHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDLAGLLGEW 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L  R E + RR  +R++ +  R+ +L+GLLIAYLNIDE+IAIIR  D+PKP ++SRF L+
Sbjct: 360 LEFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQPKPELMSRFGLS 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL L+LR L KLEE +I+ E D L  E+++++  L S ++   Q+  EI     
Sbjct: 420 DIQAEAILELKLRHLAKLEEMKIRGEQDELATERDQLEKTLGSERRLRTQVRREIE---- 475

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
               + D G  R +      A +A  + A++  EP+TVV+S +GW R+ K H VD   L+
Sbjct: 476 --KDAADYGDERRSPLVQRAAAQALDESALVPTEPLTVVLSEKGWARAAKGHDVDARGLN 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GD+ + A+   +   +  + + G+ YT+ A  L S RG GE +   ++       V 
Sbjct: 534 YKAGDAFQAAVTGRSNQPVAFIDSTGRTYTIAAHTLPSARGQGEPLSGRVNPPEGARFVG 593

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHV 661
                   + L+ +  G  F+ +  +++   + GK  L V +   +     V     DH+
Sbjct: 594 MATGAEEDRWLLGTDHGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHI 653

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDG--GISDVICFKICEGLTWIDS 714
           AVV     LL+F   ++PE++RGKG +L      + KDG   + DV      + L  + +
Sbjct: 654 AVVTTRGYLLLFPATELPELARGKGNKLIGIPSAALKDGSERVLDVAVLGPQDTL-VVHA 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R       +   ++G+R   G  +P+G+  + + 
Sbjct: 713 GKRFKALVPAEWAEYVGERARRGRQLPRGYQNANRL 748


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 450/750 (60%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 402/754 (53%), Gaps = 29/754 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   L++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM ++G  +  A+KKSAR+V
Sbjct: 5   ITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARVV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+LVRLAQ F  R  L+ GQGNFG+IDGDSAAA RYTE RM ++
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMARL 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
               L  ++++ VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E+
Sbjct: 125 CSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGEL 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            + ++ L+DNPE +IE L++ I GPDFPTGG I    + ++++Y  GRG  ++R    +E
Sbjct: 185 IDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGG-QGLIDAYTTGRGSIKIRGVVELE 243

Query: 260 EVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  +G    I++ EIPY + KS L+EKIA L+  K+I  + D+RDES      ++    R
Sbjct: 244 EARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKR 303

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++ S++  + +ET F +NM    +G+ P ++ L  +L  +L HRREV+ RR+ F
Sbjct: 304 GAIADIIINSLYKFTPLETSFGINMMA-VVGKRPMLLNLKEVLGHFLEHRREVIIRRTKF 362

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLR 435
            +   ++RV IL+GL IA  NIDE++ +IR    P+      +SRFSL++ Q  AIL++R
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSRFSLSDIQAKAILDMR 422

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  ++  EL  L+ + E   ++L++ +     I  E+ E+K  ++        
Sbjct: 423 LQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVLKGVIRDELNEIKTNYATPRKSELL 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           R           +   + +I  E   + +S RG+I+          K     ++ +   +
Sbjct: 483 RADL-------DSIDIEDLIPDEETVITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQTGD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605
           GD +   +       ++L +  GK + +    +  G     G  +  L+ L+ ++ I T 
Sbjct: 536 GDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGGHVNNLLPLDKDEHIATC 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ KG                G   + +   +++  V ++  +   
Sbjct: 596 LSLREFADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDVREIEPEVDC 655

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +V      + F+I+    M R   GV+  + + +  +   +     E    +  +   Y
Sbjct: 656 ILVSREGSAIRFNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQLLTVSEGGY 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +        +  RGG G L  +   ++G  + +
Sbjct: 716 GKRTTIDQYRVQTRGGKGILNMRLTNKTGMVVGA 749



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        L       +   + ++ +G I+              + A++ ++ D L   
Sbjct: 587 DKDEHIATCLSLREFADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDV 646

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC- 612
                    +L+S +G A      +    GR     ++ +    +++ +      D    
Sbjct: 647 REIEPEVDCILVSREGSAIRFNINDARPMGRATA-GVKGMALRPNDEVVACVVTGDQERD 705

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
           +LL VS  G        +    TR GK  L +    K  +VV        D V ++    
Sbjct: 706 QLLTVSEGGYGKRTTIDQYRVQTRGGKGILNMRLTNKTGMVVGACMVNESDDVILLTSQN 765

Query: 669 KLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKIC 706
           K++  S+ ++ +   R   GVRL    D     VI F + 
Sbjct: 766 KIIRMSVSEVSQTRGRATQGVRLVRMDDDN--KVIGFDLV 803


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/770 (32%), Positives = 400/770 (51%), Gaps = 35/770 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            DN S+SNT      +A S+   ++  Y+ Y++S I  RA+PD RDGFKPV RRI++AM 
Sbjct: 2   SDNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
             GL     F K A +VGEV+   HPHGD SVYD+LVRLAQ +V RYPLI  QGNFG+ID
Sbjct: 62  REGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSID 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTE ++  +AE  L+ +DED VDF   Y E  +EP V P+  PNLL NG++G
Sbjct: 122 GDSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGM T+IP HN+ EI +AA A+IDNP+I +++L+++I GPDFP GG  +  +  I   
Sbjct: 182 IAVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGG-FIHGKSGIESY 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            + GRG  R R    V E  +G   I+++ IPY V ++ L+ +IAELI  K I  + D+R
Sbjct: 241 LKTGRGIVRTRGVAEVVE-NKGKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES E+ RIV+  K R   P +++  ++  + +E+ F + +  L     P+ M +  +L 
Sbjct: 300 DESTEETRIVIELK-RGAIPRVIINQLYKSTALESSFGVILLALDNR-RPKQMNIKEMLT 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            ++ HRREV++RR++FR++  + R  IL+G  IA  N+D+ + IIR   N ++ K  +++
Sbjct: 358 CYIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMA 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ LTE Q +AIL LRL  L  LE  +I+ E   L+    ++  +L +  +    I  E+
Sbjct: 418 KYPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRLLEVIKEEL 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+KE +        RR+        D     + ++  E   + ++++G+I+        
Sbjct: 478 GEMKEKYGNP-----RRSQVI---AVDGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K     +      E D ++    A T D ++     G+ Y     ++   S    G A
Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEGSRTAKGRA 589

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +  + +L   + I        +D + + +++ +  G     + S+   + + G   + + 
Sbjct: 590 MANVFELQEGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKGGIIGINID 649

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             + +      +G D + +V  N + + F    + +  R  +GVR    K      V   
Sbjct: 650 EGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSENDKVVAIE 709

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    + +      +           RGG G +      +S K   +
Sbjct: 710 IVDDEAKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAI----KSDKVAGA 755



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 9/214 (4%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +       +   E     V+ +  G  +  K           +  ++  EGD+L
Sbjct: 595 ELQEGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKGGIIGINIDEGDNL 654

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A      D I+L++++ ++   P  +L     +   ++ +   + N  +V   + D  
Sbjct: 655 VGARLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSENDKVVAIEIVDDE 714

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            KLL+  + G     E SE    +R G   + + S++    +     D + +     + +
Sbjct: 715 AKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAIKSDKVAGALSVTDADEIMMFTLKGQAV 774

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              ID +    R   GV+L +   G   ++I   
Sbjct: 775 RSPIDTVRVTGRAASGVKLVNL--GNKDELIGIS 806


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/755 (34%), Positives = 410/755 (54%), Gaps = 35/755 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+ F   +KKSAR
Sbjct: 4   IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+V+GK HPHGD ++YD++VR+AQ F  RY LI GQGNFG++DGD  AA RYTE R++
Sbjct: 64  IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +++D VDF   Y+    EP V PS+ PNLL NG++GIAVGMAT+IP HN++
Sbjct: 124 KIAGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLR 183

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A + LI+NP+ S+  L+ +I GPDFPTGG IV  R  I  +Y  GRG   +RAR  
Sbjct: 184 EVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIV-GRSGIESAYSTGRGTITIRARSE 242

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  RGS  I+ TE+PYQV K++++E IAEL+ A R+  + +IRDES  +   ++    
Sbjct: 243 IEEGRRGS-RIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELK 301

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           + ++P +++  +   + +ET + +   VL  G+ P+ + L   L++++ +R EV+ RR+ 
Sbjct: 302 QGVNPQVVLNQLHKHTQLETTYGIINLVLVDGQ-PRTLTLKETLEQYINYRAEVIERRTR 360

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           F ++  ++R  IL G+LIA  +IDE+IA+IR        + ++++RF L+E Q  AIL++
Sbjct: 361 FELEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNRFGLSEEQARAILDM 420

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE+ ++ SE   L +   ++  +L S  +  + I  E+RE+ EI+        
Sbjct: 421 RLQRLTGLEQEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGD-----D 475

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
           RRT   E      +   + +I+ E + V+I+N G+I+          +           K
Sbjct: 476 RRTEILESVE---SVRPEDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
             D +     A T D +++ +  GKA+ L    +   S    G  I  L+ L  N+ I  
Sbjct: 533 SEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITE 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           A   +S      +++ +  G+             R G   + +   + +       G   
Sbjct: 593 AIPVESFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAVNLR-GDSLVAARLTDGSRE 651

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V  +  K + F    +    RG  GV+  +  +G   ++I   +  EG T      + 
Sbjct: 652 LIVATKKGKAIRFHESDVRSSGRGSMGVKAINLSEG--DELISMDVVKEGETLFTITTQG 709

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +        L +RGG G        R G  +++
Sbjct: 710 YGKRTELSEYPLQRRGGKGVKNIDT--RRGDVVAA 742



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE----GDSLKI 553
              E  R  +A   ++    E I +   N   +++      +      K     GDSL  
Sbjct: 583 QLEENERITEAIPVESFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAVNLRGDSLVA 642

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A     +  +++ +  GKA      ++ S  G G      I+L+   ++++  V      
Sbjct: 643 ARLTDGSRELIVATKKGKAIRFHESDVRSS-GRGSMGVKAINLSEGDELISMDVVKEGET 701

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLL 671
           L  ++++G     E SE     R GK    + +   + +  +     D + +  +   ++
Sbjct: 702 LFTITTQGYGKRTELSEYPLQRRGGKGVKNIDTRRGDVVAAITVSDDDGLLITTKEGVMI 761

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGG-ISDV 700
             +   +    R   GV++   K G  ISDV
Sbjct: 762 RIAASDVRVQGRATQGVKIMDVKPGDEISDV 792


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/836 (31%), Positives = 400/836 (47%), Gaps = 108/836 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KS
Sbjct: 16  DIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R
Sbjct: 76  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 136 LQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP + I+ L+  + GPDFPTGGII+  R+ I  +Y LGRG   +R +
Sbjct: 196 LGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  +   V+  
Sbjct: 255 VSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDLRDESDREGYRVVVE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  + ++T F  NM  L  G  PQVM L  +L  ++A R  V+ RR
Sbjct: 315 LKRDAVPDVVLNQLYKFTPLQTSFGANMVAL-DGGRPQVMNLKDLLTVFVAFRENVVSRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  IL GL IA  NIDE+I +IR    P                      
Sbjct: 374 TKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMSRDWPARDVETMMM 433

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +        L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L 
Sbjct: 434 LIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDKLAVEIADYLDILR 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +  + +  E+  +KE F+       RRT   +    +     + +I++E + V +S+
Sbjct: 494 SRARVQDIVRNELNAIKEEFATP-----RRTMIID---QEGEVEDEDLIQREDMVVTVSH 545

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++          K      S +  +E D +     A T   +L  S+ G+ Y     
Sbjct: 546 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVYKEKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L        G+A+  ++ +   + I T               ++  ++ GN    + S+
Sbjct: 606 RLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRRNKLSD 665

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSRGK-GV 687
            +   R G   +K+   E +  V      D V +     + + F I  +     R   GV
Sbjct: 666 FVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGRTSMGV 725

Query: 688 RLQSYKDG-------------------------------GISDVICFKICEGLT------ 710
           R  +  +G                               G +D       E  T      
Sbjct: 726 RGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRRGGADDEAGTDHEEATGAIELG 785

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         +  +   Y +  +        RGG G +      R+GK + S
Sbjct: 786 EQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRNGKLIGS 841



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 29/236 (12%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--IRS--------LKSHSVDLSALH 544
           RR+    +   +   +    I KE   V+++  G   IR             S+ +  + 
Sbjct: 670 RRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGRTSMGVRGIT 729

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG-------HGEAIQLLIDLN 597
             EGD L       T  R + +S D +A  L   N +   G         E     I+L 
Sbjct: 730 LGEGDRLISL----TILRHMDVSADERAAYLRRANAVRRGGADDEAGTDHEEATGAIELG 785

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVV 654
             + +    +  +   +L +S  G        E     R GK  + +S  ++   +    
Sbjct: 786 EQRYVE---MSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRNGKLIGSF 842

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            V   D + +V +  +L+   ++ I  + R  +GV + +  D      +     EG
Sbjct: 843 PVDDSDQIMLVTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTDEG 898


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/742 (36%), Positives = 422/742 (56%), Gaps = 22/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           + +   LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +KKS
Sbjct: 8   DFETQPLREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAMSELGLSAAAKYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTEA
Sbjct: 68  ARTVGDVLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T  A ++L  + +  V++   ++    EP   P++ PN+L NG SGIAVGMAT IP H
Sbjct: 128 RLTPYARVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGGSGIAVGMATDIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A + L+D PE +  +L E++  PDFPT   ++  RE +   Y  G G  R RA
Sbjct: 188 NLREVVDACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREELRTIYERGHGTVRARA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
           RW  E   R    IV+  +PYQV  ++++E+IA  I ++++P++ED+RDES  D  VRIV
Sbjct: 248 RWEYE---REQAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVEDLRDESDHDAPVRIV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  ++R  DP+ +M+ +F  +D+E  + +++NV+ +   P+V  L  +L EWL+ R E +
Sbjct: 305 VQLRSRRQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSLRDLLAEWLSFRTETV 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR ++R++ ++ R+ IL+GLL AYLNIDE+IAIIR ED+PKPV++ RF L++ Q +AIL
Sbjct: 365 RRRLTWRLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPVLMERFGLSDAQAEAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRLR L +LEE +I+ E  +L  E++++ + L    +   Q+  E+         +   
Sbjct: 425 ELRLRHLARLEEMKIRGEQGDLERERDELRATLGDAARLREQVKSELL------GDAEAH 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G  R +        +A  +  ++  EP+TVV+S +GW+R+ K H VD + L +K GD   
Sbjct: 479 GDERRSPLVQRGPARAMDETELMPSEPVTVVLSEKGWVRAAKGHEVDATGLSYKAGDGYL 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 +    + L + G+AY +PA  L S R  GE +   +         +    DS  
Sbjct: 539 DHALGRSNQPAIFLDSTGRAYAVPAHTLPSARSQGEPLTKRLTPPEKARFQSVLAGDSES 598

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
           + L+ S  G  F V   E+ +  R GK  L +     +   V V     G  V V   + 
Sbjct: 599 RWLLASDAGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDG 658

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRS 722
           +LL+F ++++PEM+RGKG +L       + D       +          +++       S
Sbjct: 659 RLLVFPLEELPEMARGKGNKLIGIPAQRLRDREEVVVAVAVLPAGAALRVEAGKTGKRLS 718

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
            +DL  +   RG  G  +P+G 
Sbjct: 719 HSDLEAFRAARGRRGVQLPRGL 740


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 396/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+  + E +        RRT   E+  A      + +I +E + V I+  G+        
Sbjct: 478 ELEAIVEKYGDE-----RRT---EILPASGEVTDEDLIARENVVVTITATGYAKRTKVDT 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHG 587
            +S K     +     K+ D +K      T D IL  +  G+ Y L A  L  SGR   G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 708 LAMSVVHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 80/251 (31%), Gaps = 16/251 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  ++   V     
Sbjct: 659 QLVSEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVVHDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + +   D +  +    
Sbjct: 718 FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG--LTWIDSAGRSYNRSEND 725
            ++   ++QI   SR   GVRL    D      I   + E         A       E  
Sbjct: 778 GVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQ 837

Query: 726 LLGWLGKRGGV 736
                G     
Sbjct: 838 QEHHKGSDASK 848


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/754 (34%), Positives = 414/754 (54%), Gaps = 28/754 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   +++ YL Y+LS I  RAIPD+RDG KPVHRRI++AM E+G  +   +KKSAR+
Sbjct: 3   NISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARV 62

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+IDGD+ AA RYTEARM++
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSR 122

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A   L  ++++ V+FR  Y+   +EP V P++ PN+L NG+SGIAVGMAT+IP HN+ E
Sbjct: 123 LAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGE 182

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L L+DNPE +I +L+++I  PD PTG   + + + ++E+YR GRG F++R+R  V
Sbjct: 183 VIDALLQLLDNPETNISQLMQHIKAPDLPTGA-YIYNLKGVLEAYRTGRGSFKIRSRLDV 241

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E   RG   IV+ E+PY + K+ L+EKIA L+  K+I  + D+RDES  +   ++    +
Sbjct: 242 ETRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKK 301

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++ L+ +ET F +NM  +     PQ++ L  +L+ +L HR+EV+ RRS  
Sbjct: 302 GAISDVIINKLYKLTALETSFGINMMAVVNN-RPQLLNLKQVLEYFLEHRKEVILRRSRH 360

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            ++  + R  IL+GL IA  NIDE++ +IR+     + +  ++S FSL++ Q  AIL++R
Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLISNFSLSQVQAQAILDMR 420

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  +E  ++  E   LL + E + S+L +      +I  E++E+K+ +S       R
Sbjct: 421 LQRLTNMEREKLMQEYRELLQQIEFLKSILENIDILKGEIKKELQEIKKTYSTP-----R 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
           RT   E        L   +I    + V +S  G+I+          K     ++  +  +
Sbjct: 476 RTQILEQDPDSIEML--DLIPDHDVVVTLSRNGYIKRTLLEYYHQQKRGGKGIAGANVGD 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D +           I L S  GK+Y L A  +   S    G  I+ L+ L++ + I TA
Sbjct: 534 KDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGVHIKNLLPLDNEEYIATA 593

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                +      L V+ KG                G   + +   +++  V  V  +  V
Sbjct: 594 LSERNFHQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLIAVNLKPGDELIGVKVVKDESEV 653

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +   +   + F+  ++  M R   GV+  S + G  +         E       + + +
Sbjct: 654 IITTHDGLAIRFACRELRAMGRNAAGVKGISLRQGDEVVSGAVLDPGEARELFTISEKGF 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +  +  L  RGG G +  K   ++GK +SS
Sbjct: 714 GKKTSLDMYKLQARGGKGLINMKVTSKTGKVVSS 747



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 26/243 (10%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533
           + +         R          +        L +    +    + ++ +G ++      
Sbjct: 562 KAYEIPEGSRTARGVHIKNLLPLDNEEYIATALSERNFHQRHYFLFVTKKGMVKKTSIEM 621

Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                S+ L A++ K GD L           +++ + DG A       L   R  G    
Sbjct: 622 FKNMRSLGLIAVNLKPGDELIGVKVVKDESEVIITTHDGLAIRFACREL---RAMGRNAA 678

Query: 592 LL--IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +  I L    ++V+  V D     +L  +S KG              R GK  + +   
Sbjct: 679 GVKGISLRQGDEVVSGAVLDPGEARELFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT 738

Query: 648 EKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            K   VV        + + +     K++      I  + R  +GV++   ++     VIC
Sbjct: 739 SKTGKVVSSMPVSDQEELIIFTSANKIIRLGTSDIRSVGRSTQGVKMVDLEND--QKVIC 796

Query: 703 FKI 705
             +
Sbjct: 797 ADL 799


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 448/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I   +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDNYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/746 (33%), Positives = 401/746 (53%), Gaps = 30/746 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+  ++   +   YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK A
Sbjct: 6   VRPRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE++GK+HPHGD +VYD+LVRLAQP+  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L  ++++ VDFRD ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LIDNP+ +IE L   + GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 NEVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMIL-GTEGIMNAYSTGRGHITIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RL E+IAEL   ++I  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  N+D +IA IRN    D  +  +++ F+L+E Q +AIL
Sbjct: 365 TEFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMNGFALSEAQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L  L  LE  +I+ E   ++    +++ +L + ++  + I  ++ ++K  +      
Sbjct: 425 EMQLGRLAALERQRIEEEYREVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
             RRT       AD     + +I    + + +++RG+++                     
Sbjct: 482 --RRTRII--PDADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGAT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++  L A T D +L  +  GK Y + A  L   S    G  +  LI L   + +
Sbjct: 538 IREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            +      ++    L++ + +G        E       G   + +   +++  V    G 
Sbjct: 598 TSVLAVPDFEKAEYLIMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWVAMTQGH 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
           + V +     + + F  +++  M R   GV   +  +G    V+   +  E    +    
Sbjct: 658 EDVLLTTARGQTIRFRQEEVRPMGRPATGVIGIALAEG--DRVVSMDLARENAALLVVTA 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
             Y +        +  R   G +  +
Sbjct: 716 NGYGKRTALEEYPVKGRATGGVITIR 741



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      + L     EK    ++ + RG I+              L A+  ++GD L   
Sbjct: 592 EPGEQVTSVLAVPDFEKAEYLIMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFVYDSTC 612
                 + +LL +  G+        +   R  G     +I   L     +V+  +     
Sbjct: 652 AMTQGHEDVLLTTARGQTIRFRQEEV---RPMGRPATGVIGIALAEGDRVVSMDLARENA 708

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAV--VGENR 668
            LLVV++ G        E     R   G   +++   +++  V  V  +H  +  + E+ 
Sbjct: 709 ALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDEV-AVAHVVHEHSLLTFITESG 767

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            ++    D I    R  +GV + +         +C +  +
Sbjct: 768 MVMRTEADGISMFGRNTQGVTIVNLAPNDRVAALCVEEPD 807


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A F
Sbjct: 1   MSDMAERLALHEFTEKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYADVLLGELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HNV+E+ +AA+ALID P  +++++L+ + GPD+PT   I+ SR  I + Y+ GRG  R
Sbjct: 181 PPHNVREVAQAAIALIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+  +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF+++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFAISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E ++L  E+++I ++L S ++  N +  E++   E F   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQNDLEKERDQIQAILASERKMNNLLKKELQADAEAFGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S   W+RS K H +D   L +K GD
Sbjct: 475 ----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMSWVRSAKGHDIDAKGLSYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K ++   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASVKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVKVTGDHVAVVGEN 667
              KLL+ S  G  F+   S+++A  R GK  + +    ++   LV++   D +  +   
Sbjct: 590 DEQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENARVMPPLVIEDESDMLLAITSA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++             G++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIIGIPTADAANGADGLAHLYILPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  +  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQKIDRV 737


>gi|332293377|ref|YP_004431986.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 418/762 (54%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+    A KK
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D+D VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   A IDN +++I++L+E++  PDFPTGG  +   + + E+++ GRG   +RA
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGG-TIYGYDGVREAFKTGRGRVVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV +G  CI+VTEIPYQV K+ +I+K A++I  K+I  +  IRDES  +   +++
Sbjct: 244 KATFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G  P+++ L  ++  ++ HR  V+ R
Sbjct: 303 VIKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNG-RPEMLNLKDMIHHFVEHRHVVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ +++SE + ++   E +  +L   +++ + I  E++E+K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +     +I  + + + ISN G+I+              V   A 
Sbjct: 477 -GDERRSVIEYAGGDVSIT--DLIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  + +
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDE 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y +   +++ + KG        +       G   + +  ++++  V
Sbjct: 594 VKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTNGINAITIKDDDELLSV 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TG+  V +  ++ K + F   +   M R   GVR  +  +     +    + +    
Sbjct: 654 KLTTGESQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +  +     +  RGG G        ++G+ ++
Sbjct: 714 ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTEKTGELVA 755



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 22/236 (9%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            L+          ++ + +G ++        +  +  ++A+  K+ D L          +
Sbjct: 602 DLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTNGINAITIKDDDELLSVKLTTGESQ 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L    GKA           GR       + +  + ++ I    V D    +LVVS KG
Sbjct: 662 VMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESNILVVSEKG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                   +     R GK    +     + E + +      D + ++ ++   +   +  
Sbjct: 722 YGKRSSLEDYRITNRGGKGVKTISVTEKTGELVAIKNVTDADDLMIINKSGIAIRMEVAS 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           +  M R   GVRL + K G  S     K+      ID         E DL G +G+
Sbjct: 782 LRVMGRATQGVRLINLK-GNDSIAAVAKVKSDDEAID---------EEDLEGVVGE 827


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           + A W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 IGAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/785 (29%), Positives = 405/785 (51%), Gaps = 54/785 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  V++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR++  M+E+G +    
Sbjct: 2   IDQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y +LVR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ +++E +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGMAT++
Sbjct: 122 TEARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +A +A IDN +I I ++L+YI  PDFPTGGI +     + E++  GRG   
Sbjct: 182 APHNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGI-IYGYAGVKEAFETGRGRIV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR++  +E   +G   IV+ EIPYQV K  LI+ +  L+  K++  +  I DES  +   
Sbjct: 241 VRSKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMR 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  +F  + +++ F +N   L     P+++ +  ++  ++ HR EV
Sbjct: 301 IVVDVKRDANSSVVLNKLFKYTALQSSFSVNNIALV-HGRPRMLNVKDLIHYFVEHRHEV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F +   ++R  +L+G +I   N+DE I IIR+    D+ +  ++ RF L+E Q 
Sbjct: 360 VIRRTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMERFGLSEIQS 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  +E+ ++++E + ++     +  +L   + +   I  E+ EVK  +  
Sbjct: 420 RAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIELRMQIIKDELLEVKAKYGD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
           +     RRT     S        +     + + + IS+ G+I+              V  
Sbjct: 480 A-----RRTQIVYSSE---EFNPEDFYADDEMIITISHLGYIKRTALSEFRAQGRGGVGS 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + +L  ++ GK Y L   ++  G     G AIQ ++++++
Sbjct: 532 KGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKGRAIQNMLNIDN 591

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y  +  L+  +  G              + G   + +  ++++
Sbjct: 592 DDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPRQNGVNAITIREDDQV 651

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD---VICFKI 705
             V    G+  V +   N + + F   ++ EM R   GVR  +  + G  +   +IC   
Sbjct: 652 IQVRLTDGNSEVLMANRNGRAIRFHESKVREMGRTATGVRGMTLDEDGEDELVGMICVNK 711

Query: 706 CEGLTWIDSAGRSYNRSENDLL------------------GWLGKRGGVGSLVPKGFPRS 747
            +    +  + + Y +                          +  RGG G        ++
Sbjct: 712 EDNENIMVVSQQGYGKRTLLDEVDDEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKT 771

Query: 748 GKFLS 752
           GK ++
Sbjct: 772 GKLVT 776



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 67/204 (32%), Gaps = 32/204 (15%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  +  G I+     +        ++A+  +E D +           +L+ + +G+A   
Sbjct: 616 IFATKNGVIKKTSLEAYSRPRQNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEII 632
               +         ++ +      +D +   +    +    ++VVS +G        E+ 
Sbjct: 676 HESKVREMGRTATGVRGMTLDEDGEDELVGMICVNKEDNENIMVVSQQGYGKRTLLDEVD 735

Query: 633 ------------------ANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKL 670
                                R GK    ++  +K   +  +  VT +  + ++ ++   
Sbjct: 736 DEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLVTIKNVTDENDLMIINKSGIT 795

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYK 693
           +   +     M R   GVRL + +
Sbjct: 796 IRLKVADFRVMGRATQGVRLINLE 819


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/774 (30%), Positives = 396/774 (51%), Gaps = 39/774 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++N  + + +  + +   +E  Y+ YA+S I  RA+P++RDG KPVHRRI++AM + G
Sbjct: 1   MSDNNDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D 
Sbjct: 61  YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ GIAV
Sbjct: 121 PAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN+ E+  A   L++NP    + ++   +E + GPDFPT G+IV   + I +
Sbjct: 181 GMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIV-GDQGIKD 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG  R+R    +EE G     IV+TE+P+QV    LI  IAE +   +I  +  I
Sbjct: 240 AYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGISKI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD +
Sbjct: 299 EDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L  ++AH+ EV+ RR+ +R+   ++R  IL+GL+ A   +DE+IA+IR     D+ +  +
Sbjct: 358 LSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                + + Q DAIL ++LR L  LE  +I  EL  +  E   +  +L   ++Q   +  
Sbjct: 418 KELLDVDDIQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHILAHEERQRQIVHD 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+  + E +        RRT   E+  A      + +I +E + V I+  G+        
Sbjct: 478 ELEAIVEKYGDE-----RRT---EILPASGEVTDEDLIARENVVVTITATGYAKRTKVDT 529

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHG 587
            +S K     +     K+ D +K      T D IL  +  G+ Y L A  L  SGR   G
Sbjct: 530 YKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESGRAARG 589

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y+    L++ + +G       ++  +    G   + +
Sbjct: 590 QHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINL 649

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDV 700
           +  + +     V  GD + +  E  + + F+ D   +  M R   GV+   ++  G   +
Sbjct: 650 NEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--GDDQL 707

Query: 701 ICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +   +  +G   + +    Y +           RGG+G +  K  P+ GK + +
Sbjct: 708 LAMSVVHDGEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGA 761



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 77/221 (34%), Gaps = 14/221 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA 554
           +        +Q    E  P  V+ + +G ++  +      + S  L A++  EGD+L  A
Sbjct: 599 QPEEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSAGLIAINLNEGDALIGA 658

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL S  G+A    A +    R  G A   +  +    +  ++   V     
Sbjct: 659 QLVSEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVVHDGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENR 668
            LLV +S G        E     R G   +         K+   + +   D +  +    
Sbjct: 718 FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAG 777

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            ++   ++QI   SR   GVRL    D      I   + E 
Sbjct: 778 GVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEED 818


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/770 (30%), Positives = 406/770 (52%), Gaps = 30/770 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +  N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+
Sbjct: 1   MADEENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMN 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++D
Sbjct: 61  ELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  G
Sbjct: 121 GDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +
Sbjct: 181 IAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IR
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  IL 
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAIN-HGKPETMSLKQILV 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++
Sbjct: 359 AYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELIN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  E+
Sbjct: 419 RYQLSDKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDILAKPERIDQIIYQEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++   F      G  R T  +V     +   + +I++E + + ++++G+I+        
Sbjct: 479 LDIANKF------GDERRTELQVGDV-SSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFH 531

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  ++  + D ++  +   T D +L  S  GK Y +    +     +  G  
Sbjct: 532 TQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIP 591

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +  L+ L+  + +                L   +  G       SE     + G   + +
Sbjct: 592 VINLLGLDAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIRQSGLRAINL 651

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V+   G  ++ +   +   + F+   +  M R   GVR  + +D     V  
Sbjct: 652 RDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYV-VGA 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  G   +    + Y +        +  RGG G        ++G    
Sbjct: 711 DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                +      +  G ++              L A++ ++ DSL   L  +    I++ 
Sbjct: 613 DAATSKDFLFFTTKLGTVKRTAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIA 672

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  G A +    ++ +       ++ + +L     +V A +      +L+++ KG     
Sbjct: 673 SHSGYAVSFAESDVRAMGRTASGVRGM-NLRDKDYVVGADLLIPGDNVLIITEKGYGKQT 731

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK +    +   +     L V    + + +  ++  ++ F+   +    
Sbjct: 732 AVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITG 791

Query: 683 RGK-GVRLQSYKDG 695
           R   GV +   ++G
Sbjct: 792 RATLGVHVIKIEEG 805


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/752 (37%), Positives = 450/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SDMTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+ALID P+  ++ LL Y+ GPDFPT   I+  R+ I + Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V+T +P+QV  +R++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GSVVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P++  +D DL+M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR +FR+  + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ 
Sbjct: 357 FRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D+L  E+++I +LL S ++  + +  EI+E  + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNSLLKKEIQEDAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  +   EP+T+V+S  GW+RS K H +D S L +K
Sbjct: 477 GDE-----RRSPLHERGE-AKAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ + A    +   ++ + + G++Y L    L S RG GE +   + L     I    
Sbjct: 531 AGDAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     +LL+ S  G  FI   ++++A  R GK  L +     +   +++  D   +  V
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTV 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI---SDVICFKIC---EGLTWIDSAGRS 718
               ++L+F +  +PE+S+GKG ++ S     +    D I + +         + +  R 
Sbjct: 651 TAAGRMLLFPVADLPELSKGKGNKIVSIPAAQLASGDDRILWLLAIAPHSSVTLYAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           Y+    +L  +   RG  G+ +P+G  R  + 
Sbjct: 711 YSLRPEELQKYQASRGCKGTALPRGLQRVDRI 742


>gi|332885150|gb|EGK05401.1| DNA gyrase, A subunit [Dysgonomonas mossii DSM 22836]
          Length = 866

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/786 (30%), Positives = 413/786 (52%), Gaps = 57/786 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ MSE+G       
Sbjct: 4   TEDRIIRINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMSELGNTSNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGDS AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A +A ID+ +I  + L++YI  PDFP+GG  +   + + +++  GRG   +
Sbjct: 184 PHNMTESIDAIVAYIDDRDIDTDGLMQYIKAPDFPSGG-FIYGYQGVRDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +E  G     IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES      +
Sbjct: 243 RGRAEIETEGN-HEKIVITEIPYLVNKAELIKHIADLVGEKRLDGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++ L+ +++ F +N   L  G  P+ + L  ++  ++ HR +V+
Sbjct: 302 VVDIKRDANANVVLNKLYKLTALQSSFSVNNIALVKG-RPRTLNLKDMISLFVEHRIDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR+++ ++  + R  IL+GL+IA  NIDE+IA+IR    P+  +   ++RFSLTE Q  
Sbjct: 361 IRRTTYDLRKAEERAHILEGLIIASDNIDEVIALIRASKSPQEAIESLMNRFSLTEIQSR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E D +      ++ +L++   +   I  E+ E+K  +  +
Sbjct: 421 AIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILSNEDLRMQVIKDELIEIKNKYGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+  A +    +     + + + +S+ G+I+              V   
Sbjct: 481 -----RRT---EIVYASEELNPEDFYANDEMIITVSHFGYIKRTPLTEFRAQNRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               ++ D ++    A   + ILL +  GK + L   ++  G     G AIQ L+++  +
Sbjct: 533 GSETRDADFIEHIYPASMHNYILLFTQKGKCFWLRVFDIPEGSKNSKGRAIQNLLNIESD 592

Query: 600 QDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +             Y ++  L+  +  G              + G   + +  ++++ 
Sbjct: 593 DKVTAFIRVRGFSDTDYINSHYLVFCTQAGVIKKTRLEAYSRPRQNGVNAITIREDDRVI 652

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-----K 704
            V+   GD  + +   N + + F    + EM R   GVR     + G  +VI       +
Sbjct: 653 EVLMTDGDSEILIANRNGRAIRFHESDVREMGRTATGVRGMRIDEDGQDEVIGMLAMSKE 712

Query: 705 ICEGLTWIDSAGRSYNRSEN----DLL--------------GWLGKRGGVGSLVPKGFPR 746
             +  T +  + + Y +  N    D                  +  RGG G        +
Sbjct: 713 DQKTHTIMVVSEQGYGKRTNLNDKDEEGNDLFDEDGNIIPVYRITSRGGKGVKTLNITDK 772

Query: 747 SGKFLS 752
           +GK +S
Sbjct: 773 TGKLVS 778



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 78/215 (36%), Gaps = 36/215 (16%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  +  G I+  +  +        ++A+  +E D +   L       IL+ + +G+A   
Sbjct: 616 VFCTQAGVIKKTRLEAYSRPRQNGVNAITIREDDRVIEVLMTDGDSEILIANRNGRAIRF 675

Query: 576 PAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESE 630
              ++         ++ + ID +   +++         +    ++VVS +G       ++
Sbjct: 676 HESDVREMGRTATGVRGMRIDEDGQDEVIGMLAMSKEDQKTHTIMVVSEQGYGKRTNLND 735

Query: 631 ------------------IIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
                                 +R GK    ++  +K   +  +  VT D  + ++ ++ 
Sbjct: 736 KDEEGNDLFDEDGNIIPVYRITSRGGKGVKTLNITDKTGKLVSINSVTDDNDLMIINKSG 795

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDV 700
             +   +  I  M R   GVRL +   ++  I+ V
Sbjct: 796 ITIRLKVSDIRTMGRATQGVRLINLGKRNDEIASV 830


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/763 (35%), Positives = 441/763 (57%), Gaps = 31/763 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+  L  +L 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK  +++RF 
Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +++SE + L  E+ K+ +LL S  +    +  E+   
Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDNRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   V     +
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQN 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK----------GVRLQSYKDGGISDVICFKICEGL 709
            +A V    +LL+F I  +P++ +GK          G R+ S ++      +   I +G 
Sbjct: 650 WLAAVTTEGRLLVFKISDLPQLGKGKGKGNKIIGIPGERVASREEYVTDLAV---IAQGA 706

Query: 710 TWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 707 TLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 749


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/858 (31%), Positives = 412/858 (48%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 449/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/764 (32%), Positives = 398/764 (52%), Gaps = 35/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V PS+FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NP+ +   L++ + GPDFPTGGI++  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVM-GKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL  +L
Sbjct: 297 DRDGLRISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKDILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  ++
Sbjct: 356 THQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLIDGYA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+A    +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKDILAHQERVDQIIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F  +      R T  +V        +  +  +E + V ++  G+I+           
Sbjct: 476 QTKFGDA------RRTELQVGDVTNLEDEDLIE-EEDVIVTLTRNGYIKRVPQAEFKAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  ++  + D +   L   T D +L  +  GK Y +    +     +  G  +  
Sbjct: 529 RGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L++   ++ I           +S   L  V+  G       SE       G   L +   
Sbjct: 589 LLNFEDDEKIQAVISVRGEASESKDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDG 648

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFK 704
           +++  V    G   + +  +    + F+ D +  M R   GVR    +D   +       
Sbjct: 649 DEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVMGRSAAGVRGIRLRDNDVVIGADVVT 708

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             + +  I    + + +        +  RGG G        ++G
Sbjct: 709 SSDNVLVIT--EKGFGKQTPASEYPIKGRGGKGIKTANITDKNG 750



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
              E +     ++  G ++           +  L AL   +GD +      + T  IL+ 
Sbjct: 607 EASESKDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDGDEVLSVQITNGTQSILIA 666

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +  G  Y++      S R  G +   +  I L  N  ++ A V  S+  +LV++ KG   
Sbjct: 667 TQAG--YSVRFAE-DSVRVMGRSAAGVRGIRLRDNDVVIGADVVTSSDNVLVITEKGFGK 723

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
               SE     R GK     +  +K   +  +  + G + + V      ++ F+ D + +
Sbjct: 724 QTPASEYPIKGRGGKGIKTANITDKNGVLAGMTIIHGHEDIMVTTTQGVMIRFAADSVSQ 783

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             R   GVRL   ++G     +     E L
Sbjct: 784 TGRATLGVRLIRLEEGTKVATLTKVDQEDL 813


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/804 (32%), Positives = 425/804 (52%), Gaps = 66/804 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +   + ++T  E N   V++   +   YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MSKYTENSTNFESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMD 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++D
Sbjct: 61  VLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE RM +++  +LQ +++D VDF D Y+  +SEP V P++ PNLLANG+SG
Sbjct: 121 GDSAAAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ EA L  I+N +I+I++LLE + GPDFPT GI +     I ++
Sbjct: 181 IAVGMATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGI-INGTSGIRQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+G   +R    +E  G     I+VTE+PYQV K++LI KIAEL+  KRI  +  +R
Sbjct: 240 YETGKGKIYLRCVSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLR 297

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   ++    R   P++++ +++ L++M+T F +NM  +    +P++M L  IL+
Sbjct: 298 DESDKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAI-DKGIPKLMTLKDILE 356

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------- 409
            ++AHRR+V+ RRS F +     RV +L+GL +A  NID I+ +I++             
Sbjct: 357 AFIAHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIA 416

Query: 410 ----------------------EDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                 E+ PK     M   + L++ QV AIL+L+L  L   E+
Sbjct: 417 KTWRSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEK 476

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I  E + LL   + +  +L + ++    I  E+ +++  +  +           ++  
Sbjct: 477 DKIFDEFNELLERIKYLLDILQTPERLMQVICEELIDIQSNYGNA--------RMTQILE 528

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALH 556
            +     + +I +E   V +S+ G++++                SA   K+ D +     
Sbjct: 529 HNIDLTLEDLIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFI 588

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A++ D +L  S+ GK Y L   +L   S    G+ I  L+ L   + I        +D  
Sbjct: 589 ANSHDIVLCFSSFGKVYWLKVYDLPMASRISRGKPIINLLPLEKKEIINAILPILKFDEN 648

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670
             + + +S G       +      + G   +++ + +++  V   +G+H + +   N K 
Sbjct: 649 HFVFMATSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKS 708

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           + F    +  + R   GVR     DG    V      +    + +  + + +  +     
Sbjct: 709 IRFKESDVRIVGRTAIGVRGIKLVDGD-KVVSLIVTNQDSPVLTATEKGFGKRTHLNEYR 767

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
           +  RGG G +  K   R+GK + +
Sbjct: 768 VQSRGGSGVISIKTSDRNGKIIGA 791



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 73/222 (32%), Gaps = 17/222 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E      A L     ++     + ++ G  +        K     + A+  +  D L   
Sbjct: 631 EKKEIINAILPILKFDENHFVFMATSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGV 690

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   I+L S +GK+      +  ++     G     L+D      +V+  V +   
Sbjct: 691 EITSGEHDIMLFSANGKSIRFKESDVRIVGRTAIGVRGIKLVD---GDKVVSLIVTNQDS 747

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +L  + KG       +E    +R G   + + + ++    +  +     D + ++    
Sbjct: 748 PVLTATEKGFGKRTHLNEYRVQSRGGSGVISIKTSDRNGKIIGAIQVTNEDEMMLISNKG 807

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
            L+      +  + R  +GV L +  KD  +  +      E 
Sbjct: 808 ILVRARAADVSIIGRNTQGVILINISKDEKLVSIAKVVETED 849


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/783 (33%), Positives = 413/783 (52%), Gaps = 42/783 (5%)

Query: 1   MGVDNISNSNTLVEENVKA----------VSLRFALEERYLAYALSTIKERAIPDLRDGF 50
           M  D I+++     E ++            ++   +E+ +L Y++S I ERA+PD+RDG 
Sbjct: 1   MNDDTITSNTAQEGEVIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGL 60

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI+ +M + G   G  F KSARI G+V+GK HPHGD ++YDS+VRLAQ +  RY 
Sbjct: 61  KPVHRRILFSMEKNGWRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYM 120

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGD  AA RYTEARM +    +L  +D++ VDFRD Y+ E+ EP V P+
Sbjct: 121 LVDGQGNFGSMDGDPPAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPA 180

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTG 229
           K PNLL NG  GIAVGMAT+IP HN+ E+ +A + +ID P + ++E LL+Y+ GPDFPTG
Sbjct: 181 KLPNLLLNGQIGIAVGMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTG 240

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           GI+    +S+ ++Y  GRGG  VRA   +EE  +G   IVVTE+PY V K+ LIE+IAEL
Sbjct: 241 GIVYGG-DSMRQAYATGRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAEL 299

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              K+I  ++D+RDESA     ++    +   P  ++  ++ ++ ++T F  NM  L  G
Sbjct: 300 HKEKKIT-IQDVRDESARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDG 358

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-- 407
             P+V+ L  IL+E+L HR+ V+ RR+ F +     R  IL+G  IA  NIDE+I II  
Sbjct: 359 IQPRVLGLQDILEEYLKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRA 418

Query: 408 -RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +N D+    ++ +F L+E Q  +IL L LR+L  LE  +I+ EL  L A   K++++L 
Sbjct: 419 SQNTDEAARNLMDKFKLSEVQAKSILALPLRTLTGLERQKIEDELAELRALIAKLEAILA 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             K+    I  E+ E+KE +        RRT     S+       + +I  E + V+++ 
Sbjct: 479 DEKEILKIIKAELLEMKEKYGDE-----RRTKII--SQELGKFSDEELIPDEDVIVLLTT 531

Query: 527 RGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
             +I+                   +  KE D +   + A T + +L  +  G+ + +   
Sbjct: 532 ENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRIKTY 591

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEII 632
            + +      G A   L+ L   + I +    +        L + ++ G        E  
Sbjct: 592 EVPAASLTAKGVAAVNLLQLQPEERITSIIRLEKGQKDDGYLFMATTHGTVKKTPLKEYS 651

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   +K+   ++++ + + +G +  ++     + + F+      M R  +GVR  
Sbjct: 652 NIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAIRFNESDARPMGRSARGVRGI 711

Query: 691 SYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             + G    ++   +  E    +  + + Y ++         KRGGVG        ++G 
Sbjct: 712 RLRPG--DRLVGMDLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTAKTGN 769

Query: 750 FLS 752
            ++
Sbjct: 770 VVA 772



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 17/219 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            R       +   + +    + +  G ++              L A+   +GD L+    
Sbjct: 615 ERITSIIRLEKGQKDDGYLFMATTHGTVKKTPLKEYSNIRTNGLIAIKLDDGDELRWIRR 674

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKL 614
           +   + +++ +  G+A      +    R  G + + +  I L     +V   +     KL
Sbjct: 675 SSGQNEVIMSTAFGQAIRFNESD---ARPMGRSARGVRGIRLRPGDRLVGMDLAFEDHKL 731

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGENRK 669
           LVVS KG     + +   A+ R G          K   VV V         V ++    +
Sbjct: 732 LVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTAKTGNVVAVRSLEPEASEVLIISTKGQ 791

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            +   +  IP + R   GVR+    +G     +     +
Sbjct: 792 AIRVGLQDIPTLGRTTQGVRIMRLSEGDEVASLGIIPEQ 830


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/753 (35%), Positives = 413/753 (54%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG   +     I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAE-IYGDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L  G VP V+ +  ++K +  H+ EVL RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTALQTNFSVNNLALVNG-VPMVLNIKEMIKYYFEHQIEVLVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL+IA  NIDE+I II+   ++D     +++RF LTE Q  AIL 
Sbjct: 383 KFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++LL   E ++ +L +  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYDRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+         ++ +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +   S +  G      + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D+  +  L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + +D             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLEDDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   R+G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVS 767



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E S +    L     E+  +    +++G I+                A+  KEGD L  
Sbjct: 608 IEKSESILTILPIDNYEQGSL-FFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFS 666

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +     D + + +++G        +          ++  I+L  ++ +V   +      
Sbjct: 667 VMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGVKG-INLEDDEYVVGTGLSSHGEY 725

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENRK 669
           +L V SKG   + + ++     R  K    +   ++   +  +  V  D  A ++  + K
Sbjct: 726 VLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGK 785

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++  SI  I  + R   GV+L S ++      I     E +
Sbjct: 786 VIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEI 826


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/760 (33%), Positives = 397/760 (52%), Gaps = 63/760 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E +V  +++   +   YL YA+S I  RA+PD RDG KPVHRRI+ +M+E G D+   ++
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQS+YD+LVR+AQ F  R PL+ GQGNFG++DGD  AA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM + A  +L  +D++ +DF+D Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +ALIDNP+I+I++L+E++  PDFPTGGI++  R+    +Y  G+G   VR
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIML-GRQGARLAYHTGKGSVVVR 303

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R   EEV +    I+++EIPYQV K+ ++EKIA+L+  KRI  + D+RDES  +   V+
Sbjct: 304 GRVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVV 363

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++  ++  S ++  F  NM  L     P++M L   L+ ++A R EV+ 
Sbjct: 364 VELRRDAVPDVVLNQLYRFSPLQQSFGCNMLAL-DHGRPELMNLKQFLEIFVAFREEVIS 422

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------- 417
           RR+ F +     R  +L GL IA  NIDE+I +IR    P                    
Sbjct: 423 RRTKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPL 482

Query: 418 -------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             ++E Q  AIL LRL+ L  L   +I  EL  L    E   S+
Sbjct: 483 IALIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSI 542

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S  +  + +  E+  +K  F+       RRT   E++ ++     + +I++E + V +
Sbjct: 543 LRSRARVLDIMRTELTAIKAEFATP-----RRT---EIAESESDFEDEDLIQREDMVVTV 594

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           S++G+I+          +      S +  K+ D +     A+T   +L  S+ G  Y L 
Sbjct: 595 SHQGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLK 654

Query: 577 AGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L        G+A+  ++ L+H + I T               ++  + KG+    + 
Sbjct: 655 VWRLPQSTPQARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKL 714

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMS-- 682
           S+ +   R GK  +K   ++    +V        D V +   N + + F + ++   S  
Sbjct: 715 SDFVQINRNGKIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSR 774

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           +  GVR      G    +I   I   +    +  R+Y + 
Sbjct: 775 KSTGVRGIRL--GDDDKLIAMSIMRHVDVTPAEARAYLKQ 812



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVAVVGE 666
              +L VS KG        +   + R GK  + +        +     V   D + +V +
Sbjct: 859 EQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRNGNLVASFPVDVQDQIMLVTD 918

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             +L+   +D +    R   GV +  ++      V+  +  E
Sbjct: 919 AGQLIRCPVDDVRAAGRATQGVTI--FRTAPDERVVSVERVE 958


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/757 (32%), Positives = 405/757 (53%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   +   YL Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  G  +KK
Sbjct: 4   DKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG+IDGDS AA RYTE 
Sbjct: 64  SARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ +D++ VDF   +++   EP V PS  PN+L NG SGIAVGMAT+IP  
Sbjct: 124 RMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A+I+NPEI++++++E+II PDFPTGGI +   E + ++YR GRG   +RA
Sbjct: 184 NLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGI-IYGYEGVKQAYRTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   IVVTE+PYQV K RLIEKI +L+  K+I  + DIRDES  D   ++
Sbjct: 243 RAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++  ++  + M+  F + +  L  G VP+V+ +  +++ ++ HR E++ 
Sbjct: 303 IELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLTIKEMMEAYILHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + + A +++  IL+GL I   N+DE+I+ IR        +  ++ RF+LTE Q  A
Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMERFALTEVQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  +E  +I ++    LA  E++  +L + ++Q   I  E+  VK +F    
Sbjct: 422 ILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANPERQMEIIKEELLRVKAVFGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + +++ G+I+                ++ 
Sbjct: 481 ----RRT---EIVPQEGEFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K  D ++    A T + IL  ++ G+ + L    +        G ++  +++L   +
Sbjct: 534 AQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTARGRSLANIMELQKGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ +++G     E        R G   + +   +++       
Sbjct: 594 TIRAYINVKTFDDPLFIVMATARGLIKKTEIEAFSRPRRNGIAAISIEDGDELIEARLTD 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+H  ++ +N    + F+   +  M R   GV+  +  D      +        + +   
Sbjct: 654 GEHDIIMAKNSGYAVRFAERDVRAMGRTAMGVKGITLDDDEYCISMVTSKRSDTSLLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNGFGKRSLVDDYRLTRRGARGVITLKAHEKVGNLVG 750



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 17/213 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
              +A +     +     V+ + RG I+  +  +        ++A+  ++GD L  A   
Sbjct: 593 ETIRAYINVKTFDDPLFIVMATARGLIKKTEIEAFSRPRRNGIAAISIEDGDELIEARLT 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD-STCKL 614
                I++    G  Y +        R  G     +  I L+ ++  ++      S   L
Sbjct: 653 DGEHDIIMAKNSG--YAVRFAER-DVRAMGRTAMGVKGITLDDDEYCISMVTSKRSDTSL 709

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
           L V+  G        +     R  +  + + + EK+  +V +     GD + ++  N  +
Sbjct: 710 LAVTDNGFGKRSLVDDYRLTRRGARGVITLKAHEKVGNLVGLLDVNDGDDLIIITANGIV 769

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
               +  I    R   GVRL     G       
Sbjct: 770 NRQHVSNIRLTGRNTSGVRLIRLMQGDKISATA 802


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 448/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   + +  +H  +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +D +P++S+GKG ++ +         D G++ +        LT I    R   
Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L   +G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVVGERGRRGT-LMRGLQRIDRI 737


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/761 (29%), Positives = 387/761 (50%), Gaps = 33/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  +KK
Sbjct: 6   EKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 66  SARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ E +L  +D+D VD  D ++    EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 126 RMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+++  +A  A IDN +I IE+L++ I  PDFPTGG  +     + ESY  GRG   +R 
Sbjct: 186 NIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGG-TIYGYSGVRESYLTGRGRVVIRP 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   ++V EIPY V K+ LI +IA+LI  K+I  + +I DES  +   ++ 
Sbjct: 245 KTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +    ++++ ++   + +++ F +N   L     P+++ L  I++ ++ HR +V+ R
Sbjct: 305 DIKKDAISNVVLNTLLKHTALQSSFGVNNVALV-HGRPRLLNLKDIIRYFVEHRHDVVVR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  +IDE+I +IR    P+    +      LT+ Q  AI
Sbjct: 364 RTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMDAFSLTDKQAAAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RL  L  LE+ ++++E +++      ++ +L   + +   I  E+  VK  +     
Sbjct: 424 VAMRLGQLTGLEQDKLRAEYEDIEKLIAHLNDVLAHVELRMEIIKNELLAVKAQYGD--- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT     S        +     E + + IS+ G+I+              V     
Sbjct: 481 --DRRTDIVYASE---EFNPEDFYADEEMVITISHMGYIKRTPLSEYKVQNRGGVGSKGS 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             ++ D L+  + A   + +L  +  GK + L    +  G     G AIQ L+++  +  
Sbjct: 536 ATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEGTKQSKGRAIQNLLNIEPDDK 595

Query: 602 IVTA--------FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +           + Y ++  +++ + KG              + G   + +   +++   
Sbjct: 596 VKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSRPRQNGVNAITIKEGDQLLEA 655

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G+  + +  ++ K + F   ++  M R   GVR     D   +  +          
Sbjct: 656 KLTNGENDIMIAVKSGKAIRFPESKVRPMGRTASGVRGIWMDDDDEAIGMVCVEPNNANI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   + +        +  RGG G        ++G  ++
Sbjct: 716 LVVSENGFGKRSAIEDYRITNRGGKGVKTINMTEKTGNLIA 756



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 15/217 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                V+ + +G I+     +        ++A+  KEGD L  A   +  + I++    G
Sbjct: 612 NSNYIVLCTKKGIIKKTTLEAYSRPRQNGVNAITIKEGDQLLEAKLTNGENDIMIAVKSG 671

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           KA   P   +         ++ +   + ++ I    V  +   +LVVS  G        +
Sbjct: 672 KAIRFPESKVRPMGRTASGVRGIWMDDDDEAIGMVCVEPNNANILVVSENGFGKRSAIED 731

Query: 631 IIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK    ++  EK    + L+     D++ ++  +   +   +  +  M R  +
Sbjct: 732 YRITNRGGKGVKTINMTEKTGNLIALIDVTDEDNLMIINRSGLTIRLEVSSLRVMGRNTQ 791

Query: 686 GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRS 718
           GV+L + ++      ++ V   K  E    +    R 
Sbjct: 792 GVKLINLRNEDSIAAVAKVSAAKEEENSEVVAEEERG 828


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/752 (35%), Positives = 448/752 (59%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E  +L  E+++I  +L S ++    +  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQIQGILASERKMNTLLKKEIQADADAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D  AL +K
Sbjct: 477 GD-----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD    ++   +   ++ + + G++Y L   +L S RG GE I   + L     +    
Sbjct: 531 AGDGWLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGEPITGKLTLPPGAVVEHML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   +++IA  R GK  + +     +   +++  D   +  +
Sbjct: 591 MTGEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S       K       +     +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPQLSKGKGNKIISIPSADAAKGDDKLAYLTILPPQSTVTLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L    G+RG  G+ + +G  R    
Sbjct: 711 IKLRPEELQKVHGERGRRGT-LMRGLQRIDSV 741


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/790 (34%), Positives = 414/790 (52%), Gaps = 64/790 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AMS +G D+   +KKSA
Sbjct: 11  LIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKKSA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPH D +VYD++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 71  RIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D V++   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP HN+
Sbjct: 131 SKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPHNL 190

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +  LA ID+ +ISIE+L++YI GPDFPT  I +  ++ I E+YR GRG   +RAR 
Sbjct: 191 FEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAI-INGKQGIEEAYRTGRGKICIRARA 249

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE E   G   IVV+EIPYQV K+RLIEKIA+LI  KRI  +  +RDES +D   ++  
Sbjct: 250 IVEVEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRIIIG 309

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ ++  F +NM  L+ G+ P++  L  IL  ++ HR++++ RR
Sbjct: 310 IKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQ-PKIFSLKEILSAFICHRQDIITRR 368

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    RV IL+ L++A  NI+ II + RN + P                      
Sbjct: 369 TIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQC 428

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                R+ LTE QV AIL+LRL +L  LE  ++  E   LL + 
Sbjct: 429 REVHHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLTKI 488

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +LN  ++    I  E+  +++ +        RRT   E++      + + MI KE
Sbjct: 489 VDLLRILNEPERLMEVIREELNYIQKQYKDP-----RRT---EITTISSNLVIEDMINKE 540

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S +G+++          K      SA+  KE D +   L A+T D ILL S+ G
Sbjct: 541 NVVVTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRG 600

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L   S    G  I  L+ L  N+ I T      Y+  C + + ++ G    
Sbjct: 601 RMYWMKVYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCNVFMATASGTVKK 660

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
                       G   + +   +++  V    G + V +     K++ F   Q+  M R 
Sbjct: 661 TALIAFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSMGRT 720

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             GVR  +  +G     +     +G   +      Y +           R   G +  K 
Sbjct: 721 ATGVRGINLAEGDRVVSLIIPNIDGH-ILTVTQHGYGKRTTQNEYPTKSRATQGVISIKA 779

Query: 744 FPRSGKFLSS 753
             R+G+ + +
Sbjct: 780 SERNGQVIGA 789



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 77/202 (38%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +      L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 629 ETNERITTILPVRQYEEGCNVFMATASGTVKKTALIAFSRPRSAGIIAVNLHEGDELIGV 688

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +  + ++L S  GK    P   + S       ++  I+L     +V+  + +    +
Sbjct: 689 NVTNGNNEVMLFSAYGKVVRFPETQVRSMGRTATGVRG-INLAEGDRVVSLIIPNIDGHI 747

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G      ++E    +R  +  + + + E+   +   ++V   D + ++ +   L
Sbjct: 748 LTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERNGQVIGAIQVDEHDQIMLITDAGTL 807

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++  + R  +G+ L  
Sbjct: 808 VRTRVSEVSIVGRNTQGITLIR 829


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 410/757 (54%), Gaps = 31/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ YA+S I  RAIPD RDG KPVHRR ++AM EMG      +KK
Sbjct: 6   EGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD ++YD+LV++AQPF  R  L+ GQGNFG+IDGDSAAA RYTEA
Sbjct: 66  SARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+++E +L  +D+  VDF   ++E   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 126 RLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+CEA   +ID+   S E+L++ + GPDFPTGGI++     I ++Y  GRG   VR 
Sbjct: 186 NLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMM-GTAGIRDAYLTGRGKCVVRG 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +EE GR +  I++TEIP+QV K+RLIE IA L+  KRI  + DIRDES  D   ++ 
Sbjct: 245 VAEIEEEGR-TPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P +++  ++  + +E+ F +    +   + P+ + L  I+ E+L HR +V+ R
Sbjct: 304 ELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQ-PRTLNLKEIIHEFLKHRVDVVRR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R+ IL+GLL+A  NID +IA IR     D+ +  +V++F+L E Q DAI
Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAKFALDEVQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L ++LR L  LE  +I  E D + AE E++ ++L S      +I  E+ ++   F     
Sbjct: 423 LKMQLRRLAALEHQKILDERDAIAAEIERLSAILASEASILAEIKKELVDIGARFGDE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSAL 543
              RRT   + +    A  ++ +IE +P+ V +++  +++        + +     +  +
Sbjct: 481 ---RRTRIAQAAE---AFDREDLIEDKPVLVSLTSSNYVKRIDLDTYRNQRRGGHGVIGM 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             K+ D ++    A+  D +L  +  G+ Y L   +L  G   G G+A+  L++L+  + 
Sbjct: 535 ATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQRTGKGKALVNLLNLDGEER 594

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           + T      Y     L   +  G    +   E     + G   + +   + +  V    G
Sbjct: 595 VTTVIPVREYRPDHHLFFATRNGTVAKMALDEFSRPRQTGINAINLRDGDALVDVKATDG 654

Query: 659 DHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +   ++     + L F  + +  + R   GVR    + G     I     + L  I    
Sbjct: 655 NQELILTTKFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDALQAIAIVEDDHLLTIT--E 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + Y +           RG +G        R+G  + S
Sbjct: 713 QGYGKRTEFDEYRGHGRGTLGVRNIVVDARAGNVVGS 749



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +  +++ +  +  + GD+L+        D +L ++  G             RGHG  
Sbjct: 675 VRPVHRNAMGVRGIKLRHGDALQAIAIVED-DHLLTITEQG---YGKRTEFDEYRGHGRG 730

Query: 590 IQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
              + ++  +     +V +       +++V+S+ G     + SEI    R  +G   +K+
Sbjct: 731 TLGVRNIVVDARAGNVVGSMAVSDDDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKL 790

Query: 645 SSEEKMKLVVKVTGDH 660
              +++     +  + 
Sbjct: 791 DDGDRVIGFTILDSEE 806


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/753 (35%), Positives = 413/753 (54%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N +ISI +++E++ GPDFPTG   +     I+  +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAE-IYGDSGIINYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K  LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L  G VP V+ +  ++K +  H+ EVL RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTALQTNFSVNNLALVNG-VPMVLNIKEMIKYYFEHQIEVLVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F ++    R+ I++GL+IA  NIDE+I II+   ++D     +++RF LTE Q  AIL 
Sbjct: 383 KFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++LL   + ++ +L +  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYDRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+         ++ +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +   S +  G      + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D+  +  L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + +D             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLEDDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   R+G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVS 767



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 13/221 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E S +    L     E+  +    +++G I+                A+  KEGD L  
Sbjct: 608 IEKSESILTILPIDNYEQGSL-FFTTSKGIIKRANLSDFESIRANGKIAITLKEGDKLFS 666

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +     D + + +++G        +          ++  I+L  ++ +V   +      
Sbjct: 667 VMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGVKG-INLEDDEYVVGTGLSSHGEY 725

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVA-VVGENRK 669
           +L V SKG   + + ++     R  K    +   ++   +  +  V  D  A ++  + K
Sbjct: 726 VLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGK 785

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++  SI  I  + R   GV+L S ++      I     E +
Sbjct: 786 VIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEI 826


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 450/750 (60%), Gaps = 23/750 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   TDITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +E++L  + +  VD++  ++    EP   PS+ P++L NG +GIAVGMA
Sbjct: 122 MRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGVTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +ALID+P + ++ LLE++ GPD+PT   I+  +  + + YR GRG
Sbjct: 182 TDIPPHNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELKKLYRDGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RARW      + +  IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SIKMRARWH-----KDNGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              RIV+ P++  +D + LM  +F+ +D+E  + +N+N++ +   PQV  L  IL EWL 
Sbjct: 297 NPTRIVIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGLLKILTEWLE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE + RR  +R+  +  R+ IL+GLL+AYLNIDE+I IIR ED+PK  ++SRF L+E 
Sbjct: 357 FRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPKKELMSRFGLSEK 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L KLEE +I+ E D L  E+E+++ +L S ++    +  EI    E +
Sbjct: 417 QAEAILEIKLRQLAKLEEIKIRGEQDELNKEREQLEKVLGSERRMNTLLKKEILADAEKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E +   KA  ++ +I  EPITVV+S +GWIR  K H VD ++L +K
Sbjct: 477 GDE-----RRSPLVERAE-AKAMTERDLIPSEPITVVLSEKGWIRHAKGHDVDPTSLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   +    +   ++ + +DG++Y L +  L S R  GE I   +++     +    
Sbjct: 531 SGDSYLASARGKSNQPVVFIGSDGRSYALESHTLPSARSQGEPITGRLNITAGTAVRHVM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVAV 663
           + ++   +L+ S  G  F+ ++ ++++  R GK  L +    ++     V  +  D +  
Sbjct: 591 MGENDNLVLMASDAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGR 717
           +    ++L+F + ++P++ +GKG ++ +                F I +G +  + +  R
Sbjct: 651 ITNEGRMLVFPVKELPQLGKGKGNKIINIPSARAKAREELLTQLFVIPQGASVTLHAGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             +    D+  + G+RG  GS++P+G  R 
Sbjct: 711 KLSLKPTDIDNFRGERGRRGSMLPRGLQRV 740


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/763 (30%), Positives = 387/763 (50%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ +SEPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTG-GIIMGRGGIYRAYESGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G  R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDERRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  I  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPIVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + +              L  V+  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQAVVNIPEGADDNYLFFVTKMGTVKRTHVSEFANIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F+   +  M R   GVR  + +      V    +    
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFNESDVRAMGRTAAGVRGINLRPEDYV-VGSGVLGAND 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +A +       +     ++  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQAVVNIPEGADDNYLFFVTKMGTVKRTHVSEFANIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L     +V + V  +  ++
Sbjct: 655 LTTDGNQNILIGTHLGYAVTFNESDVRAMGRTAAGVRG-INLRPEDYVVGSGVLGANDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       SE     R GK      +   +     ++V  + + + V+  +  +
Sbjct: 714 LVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVIVLDSDEDIMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + + SR   GVRL    D      +     E
Sbjct: 774 IRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTIVPTE 811


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/783 (29%), Positives = 391/783 (49%), Gaps = 45/783 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM 
Sbjct: 2   TDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAMW 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     ++ KSA+ V + +G  HPHGD ++YD+LVRLAQP+  RYP++ GQGNFG+  
Sbjct: 62  DNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSRG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +MT +A  +++ +D++ VDF+  Y+ + SEPVV PS+ PNLL NG+SG
Sbjct: 122 NDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSSG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT +P HN++E+ EA    +DNP+ S E+     +E I GPDFPT G IV   + 
Sbjct: 182 IAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIV-GDQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y  GRG  R+R +  +EE G     IV+TE+PY+V    +I  IAE +   +I  +
Sbjct: 241 IKDAYSTGRGSIRMRGKTSIEEEGN-RTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             I DE S      ++    R     +++ +++  S ++T F  NM  +  G VP+ + L
Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLAL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
           + +++ ++AH+ EV+ RR+ + +   ++R  IL+GL+ A   +DE+IA+IR  +     +
Sbjct: 359 NHLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIAR 418

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +     + ++Q  AIL+++LR L  LE  +I  +L  +  E      +L   ++Q   
Sbjct: 419 EGLKDLLEIDDDQAQAILDMQLRRLAALERQKIIDQLAAIELEIADYKDILAKPERQRAI 478

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529
           +  E+RE+ E +        RRT       AD     + +I +E + V I+  G+     
Sbjct: 479 VGDELREIVEKYGD-----DRRTRII---PADGDVTDEDLIAREDVVVTITETGYAKRTR 530

Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
               R+ K     +     K+ D ++    + T D +L  +T G+ Y + A  L      
Sbjct: 531 TDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTKGRVYRIKAYELPEANRT 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+     + I        Y     L++ +  G        +  +    G   
Sbjct: 591 ARGQHVANLLAFQPEERIAGVIRIKSYQDAPYLVLATRNGLVKKSRLEDYDSPRSGGLIA 650

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++         D + +V E  + + F  +   +  M R   GV    + DG  
Sbjct: 651 VNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTLRPMGRATSGVMGMRFNDG-- 708

Query: 698 SDVICFKICEGLT-------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             ++   +    T        + +  R Y++           RGG G L     P+ GK 
Sbjct: 709 DALLSMSVVRADTSDQEKYFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFDPKRGKL 768

Query: 751 LSS 753
           + +
Sbjct: 769 VGA 771



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 20/226 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D      L A++ ++GD L  A
Sbjct: 603 QPEERIAGVIRIKSYQDAPYLVLATRNGLVKKSRLEDYDSPRSGGLIAVNLRDGDELVGA 662

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-------DIVTAFV 607
             A   D +LL+S  G++    A +  + R  G A   ++ +  N         +V A  
Sbjct: 663 ALAGPDDDLLLVSEKGQSIRFHAND-DTLRPMGRATSGVMGMRFNDGDALLSMSVVRADT 721

Query: 608 YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-GDHVA 662
            D     LLV + +G +     SE  A  R GK  L +       K+     V   D + 
Sbjct: 722 SDQEKYFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFDPKRGKLVGATIVELQDELY 781

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            +  +  ++     Q+ +  R  KGVRL +  +G     I     E
Sbjct: 782 AITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLAIARNADE 827


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/746 (35%), Positives = 417/746 (55%), Gaps = 31/746 (4%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +E YL Y++S I  RA+PD +DG KPVHRRI++AM+E+G+     +KKSARIVG+VIGK 
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEAR+T+ +E IL+ 
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           +D+D VDF   Y++   EP V P++ PNLL NG+SGIAVGMATSIP H + EI +AA+ +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           I + + S E+LLE++ GPDFPTGGII   ++ I ++YR GRG  +VRA+  +E+  +   
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIF-GKQGIRDAYRTGRGRIKVRAKVHIEKT-KTRD 254

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+ E+P+QV K+RL+E+I+EL   K I  + ++RDES  D   V+    R    ++++
Sbjct: 255 VIVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVL 314

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             ++  S MET F + +  ++    P++  L  +L  ++ HR+ V+ RR+ F ++    R
Sbjct: 315 NHLYKSSVMETTFGIILLAINNKE-PKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKAR 373

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL IA  +IDE+IA+IR+       K  ++ RF L+E Q  AIL +RL+ L  LE
Sbjct: 374 AHILEGLKIALDHIDEVIALIRSSQDVEIAKNALMERFGLSELQSKAILEMRLQRLTGLE 433

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +I+ E  +LL E E + S+L S ++    I+ E+ E+KE FS        R T  E  
Sbjct: 434 RDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNELLEIKEKFSSP------RCTIIE-- 485

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
              ++   + +I  EP+ V +S+RG+++                  + +  + D ++   
Sbjct: 486 EDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQSFF 545

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
            A+T D IL ++  G+ Y L    +        G+A+  LI L+ ++ I+       +  
Sbjct: 546 VANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMATITTSDFHD 605

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENR 668
              L+  +  G       SE       G   + + +++++     +T D   + V     
Sbjct: 606 DKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELVTASIITQDVKELFVATYQG 665

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDL 726
             + F I+ + E+ R  +GV    +K    S +    I  E    +  + +   +     
Sbjct: 666 MCIRFDINDVREIGRAARGVTAIRFKAKEDSVIGATTIRSENDKLLTVSEQGIGKQTLAG 725

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L  RGG G +V K   ++GK +S
Sbjct: 726 AYRLQSRGGKGVIVMKLTAKTGKLVS 751



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 67/210 (31%), Gaps = 14/210 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDS-LKIAL 555
                AT+  +    +   V  +  G ++              + A++    D  +  ++
Sbjct: 591 DEKIMATITTSDFHDDKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELVTASI 650

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS-GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                  + + +  G        ++   GR       +      +  I    +     KL
Sbjct: 651 ITQDVKELFVATYQGMCIRFDINDVREIGRAARGVTAIRFKAKEDSVIGATTIRSENDKL 710

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS +G             +R GK  + +    K   +  ++ V  +   + V+  + K
Sbjct: 711 LTVSEQGIGKQTLAGAYRLQSRGGKGVIVMKLTAKTGKLVSIINVNDENMDLMVLTTSGK 770

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
           ++    + I E  R   GV++ +     ++
Sbjct: 771 MIRVDTEAIREAGRNTSGVKIVNVAGEKVA 800


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/772 (32%), Positives = 407/772 (52%), Gaps = 33/772 (4%)

Query: 4   DNISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
            NI     L EE     ++  ++   +E+ +L Y++S I +RA+PD+RDG KPV+RRI++
Sbjct: 7   KNIVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILY 66

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM++ G     A  KSA+IVGEV+G  HPHGD S+YD++V LAQP+  RY L+ GQGNFG
Sbjct: 67  AMNKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFG 126

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTEARM +V   +L  +D++ VDFRD ++  + EPVV PS  PN+L NG
Sbjct: 127 SMDGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNG 186

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +AA+A IDNPEI++++LL +I GPDFPTG  +      +
Sbjct: 187 QMGIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGG-APM 245

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA   +EE   G + I+VTE+PY + K   ++K+ EL++AK+I  + 
Sbjct: 246 RQAYETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIA 305

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D RDESA     V+    +   P  ++  ++ L+ ++T F  N+  L  G  P+VM L  
Sbjct: 306 DARDESARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKE 365

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMV 418
           IL E++ HR+ V+ RR+ F ++    R  IL+GL IA  +IDE+I  IR   D     ++
Sbjct: 366 ILAEFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYDDADKRLM 425

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF L+E Q  AIL ++LR L+ LE  +I+ EL  L    +K++++L S ++  N +  E
Sbjct: 426 ERFGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLHELIKKLEAILASEQEILNVVKTE 485

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------- 531
           +  +K+ +        RR+              + +I +E   +++++  +I+       
Sbjct: 486 LLAMKDKYGDE-----RRSKIINHEL--GKFSDEELIPEEESVILLTSENYIKRTLVSDY 538

Query: 532 -SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
                       +  KE D +   + A T D +L  +  G+ + L A  + +      G 
Sbjct: 539 RRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFRLKAYEVPAASLSAKGV 598

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           A   L+ L   + I     ++        L + + KG        +       G   +K+
Sbjct: 599 AAVNLLQLQPEEKITAIIKHEKNANDKGYLFMATQKGTVKKTPVKDYANVRTNGLIAIKL 658

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              ++++ + + +GD  V +     + + F+      M R  +GVR    +      V+ 
Sbjct: 659 DEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRGVRLRPN--DSVVG 716

Query: 703 FKICEGL--TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             I  G   T +  + + + +          KRGGVG        ++G  +S
Sbjct: 717 MDIVTGDDQTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGPIIS 768



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 14/214 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +       +     +    + + +G ++              L A+   EGD L+    
Sbjct: 610 EKITAIIKHEKNANDKGYLFMATQKGTVKKTPVKDYANVRTNGLIAIKLDEGDELRWIKR 669

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLL 615
               + +++ ++ G+A      +          ++  + L  N  +V    V      LL
Sbjct: 670 TSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRG-VRLRPNDSVVGMDIVTGDDQTLL 728

Query: 616 VVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKL 670
           VVS KG     + S   ++ R G   K  +  +    +  V  +  +     +V +N + 
Sbjct: 729 VVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGPIISVQTIDPEVTEALLVSQNGQT 788

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           +  S+  I  + R   GV +    DG     I  
Sbjct: 789 IRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSIGL 822


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/793 (30%), Positives = 400/793 (50%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEENVKA---------VSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  DN  +     E++            + L   ++  YL YA+S I  RA+P++RDG K
Sbjct: 1   MVDDNRPDGGEQPEDSTTPAQAGNRVELIELETEMQRSYLDYAMSVIVSRALPEVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++AM + G      + K AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGYYKCARVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + G GNFG+   D AAA RYTE +M  +A  +++ +DE+ VDF   Y+    EP V PS+
Sbjct: 121 VDGNGNFGSPGNDPAAAMRYTECKMMPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFP 227
            PNLL NG +GIAVGMAT+IP HN++E+   AL  +++P  S E+LL    E I GPDFP
Sbjct: 181 IPNLLVNGATGIAVGMATNIPPHNLREVASGALWALEHPGASNEELLEALVERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           TG +IV  R  I ++YR GRG   +RA   VEE+ +G  C+V+TE+P+QV    L  KIA
Sbjct: 241 TGALIV-GRRGIEDAYRTGRGSITMRAVVEVEEI-QGRQCLVITELPFQVNPDNLALKIA 298

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+   RI  + D+RDE S+   + ++    R     +++ +++  +D++T F  NM  L
Sbjct: 299 DLVKDGRIAGIADVRDESSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLAL 358

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             G VP+ + LD  ++ W+AH+ EV+ RR++FR++  + R  IL+ LL A   ID +IA+
Sbjct: 359 VDG-VPRTLSLDAFIRHWVAHQIEVIVRRTTFRLRKAEERAHILRALLKALDQIDAVIAL 417

Query: 407 IRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     D  +  ++    + E Q +AIL ++LR L  LE  +I SE D L A+  + ++
Sbjct: 418 IRASESADAARTGLMRLLDIDELQANAILEMQLRRLAALESARILSEHDELQAKINEYNA 477

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   ++ E+  + E +        RR+T      +D     + +I +E I V 
Sbjct: 478 ILASPARQREIVSEELTAIVEKYGDE-----RRSTLI---PSDGDLSIEDLIAEEDIVVT 529

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+++          K     +     K+ D +       T + IL  +  G+ Y  
Sbjct: 530 ITRGGYVKRTRSDLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVYRA 589

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESE 630
               L        G+ +  L+     + I        Y+    L++ +  G        +
Sbjct: 590 KGYELPDAGRDARGQHVANLLAFQPEEHITQVMAVRTYEDKPYLVLATRGGLVKKTPLKD 649

Query: 631 IIANTRKGKTFLKVSSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMS 682
             +    G   + +  +     +++     V+  D + ++    + + F      +  MS
Sbjct: 650 YDSPRSGGLIAINLRQDEEGQGDELIGAELVSADDDLLLISRKAQSIRFKATDEALRPMS 709

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R   GV+  ++++    +++   +    T++  +    Y +  +     +  RGG G   
Sbjct: 710 RATSGVKGMAFRED--DELLSMNVVRPGTYVFTATDGGYAKRTSVDEYRVQGRGGFGIKA 767

Query: 741 PKGFPRSGKFLSS 753
            K     G  + +
Sbjct: 768 AKIVEGRGSLVGA 780



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKE-----GD 549
           +        +     E +P  V+ +  G ++       D      L A++ ++     GD
Sbjct: 613 QPEEHITQVMAVRTYEDKPYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGD 672

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A      D +LL+S   ++    A +  + R    A   +  +    + ++++  V
Sbjct: 673 ELIGAELVSADDDLLLISRKAQSIRFKATD-EALRPMSRATSGVKGMAFREDDELLSMNV 731

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAV 663
                 +   +  G A      E     R G   K    V     +   + V   D +  
Sbjct: 732 VRPGTYVFTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESDEIMA 791

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +  +  ++   + ++ E  R   GV+L +   G    V+   
Sbjct: 792 ITLSGGVIRTRVSEVRETGRDTMGVQLINL--GKRDAVVGMA 831


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/758 (35%), Positives = 445/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYSEEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF 
Sbjct: 356 EWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPILMQRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLELTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S   KA  ++ +I  E +TVV+S++GW R  K H +D   
Sbjct: 476 AEMYGD-----DRRSPVIERSE-AKALNEKDLIPSESVTVVLSDKGWARVGKGHDLDAQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++ GD+ + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LSYRSGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + +  LL+ S  G  FI +  ++++  + GK  + V     +   ++V+    D
Sbjct: 590 EHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R       DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPTDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 391/765 (51%), Gaps = 29/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T  +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDDNQTQ-DRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 120 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  
Sbjct: 180 GMTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYES 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 239 GKGNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 299 DQTGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF 
Sbjct: 358 DHQKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++
Sbjct: 418 LDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S    +   + +IEK+ I + +++ G+I+           
Sbjct: 478 QKRF------GDKRRTEIGASEV-ISIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  
Sbjct: 531 RGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVN 590

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T            L  ++  G       SE       G   L +   ++
Sbjct: 591 LLQLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 650

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V    +  
Sbjct: 651 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRDHDYV-VGSGVLDA 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +   Y +        +  RGG G        ++G    
Sbjct: 710 DDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  +  +V + V D+  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRG-INLRDHDYVVGSGVLDADDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S  G       +E     R GK      +   +     ++V   G  + V+  +  +
Sbjct: 714 LVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/754 (36%), Positives = 446/754 (59%), Gaps = 25/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +A++D PE+S+++ +EYI GPD+PT   I+  ++ I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE       +++T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAIWSKEEGN-----VIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RRE +  R + R++ + +R+ IL GLL AYLNIDE+I +IRNED+PKPV++ RF LTE 
Sbjct: 357 YRRETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPVLMQRFGLTET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +A+L L+LR L KLEE +I+ E D L  E++K+ S+L S ++    +  EI    E +
Sbjct: 417 QAEAVLELKLRHLAKLEEVKIRGEQDELSKERDKLQSILGSERKLNTLLKKEIIADAESY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA     ++  EPITVV+S  GW+RS K H +D + L++K
Sbjct: 477 GD-----DRRSPLKERIE-AKAMSDHDILPSEPITVVMSEMGWVRSAKGHEIDPAGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A+   +   ++ + T G++Y++   +L S RG GE +   + L     +    
Sbjct: 531 SGDSFRSAVRGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLALPAGALVEHLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   S++IA  R GK  + +    K+   +++  +    +  
Sbjct: 591 MAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAG 716
           + +  ++L+F +  +P++S+GKG ++ S         +  +S ++       +T +    
Sbjct: 651 ITKAGRMLMFPVSDLPQLSKGKGNKIVSIPAAQAVSGEDTLSWLLVLSPQSTIT-LYFGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  +  +RG  G+ +P+G  R  + 
Sbjct: 710 RKLQLRPEDLQKFRAERGRKGTSLPRGLQRVERV 743


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/858 (30%), Positives = 411/858 (47%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A++   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR     +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGIKLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  +   EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGIKLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/772 (30%), Positives = 391/772 (50%), Gaps = 36/772 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
             +  ++ + ++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G 
Sbjct: 3   DETGEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGY 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D A
Sbjct: 63  RPDRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE +M  +A  +++ +D+  VDF+D Y+ ++ EPV+ P++FPNLL NG+SGIAVG
Sbjct: 123 AAPRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ E A   + NP  S E+LLE     I GPDFPTG  I+   + I ++
Sbjct: 183 MATNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQIL-GHKGIEDA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I  + D+R
Sbjct: 242 YRTGRGSITMRAVVNVEEI-QNRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIADLR 300

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE S    + ++    R     +++ +++  + ++  F  NM  +  G VP+ + LD  +
Sbjct: 301 DETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDG-VPRTLSLDAFI 359

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMV 418
           + W+AH+ EV+ RR+ F +   + R  IL+GLL A   +DE+IA+IR     D+ +  ++
Sbjct: 360 RHWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARGGLI 419

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + + QV+AIL+++LR L  LE  +I+ E   L  E  + +S+L S  +Q   ++ E
Sbjct: 420 DLLGIDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSILASEDRQRTIVSEE 479

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+   F        RRT    +   D     + +I +E + V I+  G+++       
Sbjct: 480 LAEIVNKFGDE-----RRTQI--MLGYDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNY 532

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGE 588
                    +     +  D ++      T   +L  +  G+ Y   A  L        G+
Sbjct: 533 RSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEAGRDAKGQ 592

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+    ++ I        Y  +  L++ +  G        +   N   G   + + 
Sbjct: 593 HVANLLAFQPDEKIAQVLDLKDYQQSPYLVLATKNGLVKKTRLEDYDTNRSAGVIAINLR 652

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVI 701
            E+++     V+  D + +V    + + F+     +  M R   GV    ++      + 
Sbjct: 653 DEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEALRPMGRATSGVTGMKFRQDD-ELLA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + E           Y +           RGG+G  V K     G  + +
Sbjct: 712 ANVVTEDSYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKLVEDRGDLVGA 763



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLST 568
            ++ P  V+ +  G ++  +    D +      A++ ++ D L  A     +D +LL+S 
Sbjct: 615 YQQSPYLVLATKNGLVKKTRLEDYDTNRSAGVIAINLRDEDELVSAQLVSESDDMLLVSR 674

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            G++    A +  + R  G A   +  +    + +++ A V      + +V+  G A   
Sbjct: 675 KGQSIRFTATD-EALRPMGRATSGVTGMKFRQDDELLAANVVTEDSYVFIVTEGGYAKRT 733

Query: 627 EESEIIANTRKGKTF--LKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R G      K+  +  + +  ++    D V VV E  K++  ++ ++P   
Sbjct: 734 AVEEYRTQGRGGLGIKVAKLVEDRGDLVGALIVQDDDEVLVVMEGGKVVRSNVAEVPAKG 793

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA---GRSYNRSENDLLGWLGK 732
           R                VI  K  +    I+ A    R     E +    L +
Sbjct: 794 R------------DTMGVIFAKPDKNDRIIEVARNRERGLESEETEDEVPLTE 834


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/824 (45%), Positives = 512/824 (62%), Gaps = 81/824 (9%)

Query: 3   VDNISNSNTLVEENVKAV--SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            +N++++    +  +      LR A+ +RYL YALSTI  RA+PD RDG KPVHRRI+ A
Sbjct: 37  SENMTDTVDDPDNPISEFAEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFA 96

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+ L+ G  F+KS++I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGN
Sbjct: 97  MRELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 156

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+ AA RYTEARMT VAE +L+G+DEDAVDFR+ Y+    EPVV P+ FP+LLANG 
Sbjct: 157 IDGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGA 216

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+ +A L LI  P+   + LL YI GPDFPTGG+IVE RE+I 
Sbjct: 217 AGIAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIA 276

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  R+R++W VE++GRG W I+VTEIPYQVQKS+LIEK+AE+I  K++PLL D
Sbjct: 277 EAYRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLAD 336

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDESA+DVRIVL PK R+++P++LM  +F  SD+E RF LNMNVL  G  P+V  L  +
Sbjct: 337 VRDESADDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEV 396

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L+ +L  RREVL RRS  RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK  ++  
Sbjct: 397 LRAFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYE 456

Query: 421 FSLTENQVDAILNLR-----LRSLRKLEEYQIKSELDNLLAEKEKIDS------------ 463
                +Q D I         +  L  ++   ++   D      E I              
Sbjct: 457 DWSRPHQ-DTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFV 515

Query: 464 -------------LLN----SGKQQWNQ-----------------------------IAC 477
                        +LN    S ++                                 I  
Sbjct: 516 GRSEGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGD 575

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+++ K+ F K    G RRT F E +        +AMIE+EP+T+V S  GWIR++  H 
Sbjct: 576 ELKDAKKKFGKDYVAGARRTQFAEAAEV-PDVPLEAMIEREPVTIVCSQMGWIRAMSGHV 634

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                  FK+GD  + A HA TTD+I++ + +G+ YTL A NL  GRG GE ++L++DL 
Sbjct: 635 DLTRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLP 694

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           ++ +I+  FV+    KL+V S  GN FIV E++++A T+ GK  L VS ++  KLV  V 
Sbjct: 695 NDVEIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVS-DDVAKLVKPVA 753

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKIC 706
           GDHVAVV ENRKLL+F I ++PEM RGKGVRLQ Y            DGG+SD+  F + 
Sbjct: 754 GDHVAVVSENRKLLVFPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLA 813

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            GL+W  +  R   R+E D+  W+GKR GVG + P GFP+S  F
Sbjct: 814 TGLSWAATGDR--TRTEVDMSPWIGKRAGVGKMPPHGFPKSNTF 855


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G +R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F    +  M R   GVR  + ++     V    + +  
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRGINLRENDYV-VGSGVLGKDD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  N  +V + V     ++
Sbjct: 655 LTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRG-INLRENDYVVGSGVLGKDDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       +E     R GK      +   +     ++V   G  + V+  N  +
Sbjct: 714 LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVIVVDKGKDIMVITTNGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTE 811


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/762 (29%), Positives = 384/762 (50%), Gaps = 36/762 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +     +  + V+ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++ M + G
Sbjct: 1   MVEDVEVTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D 
Sbjct: 61  YRPERSFNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSPGNDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M  +A  +++ + ED VDF+D Y+ +  EP V PS+FPNLL NG++GIAV
Sbjct: 121 AAAPRYTETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ +     + NP++      E+L++ + GPDFP+G  I+   + I +
Sbjct: 181 GMATNIPPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQIL-GHKGIEQ 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG    RA   VEE+     C+VVTE+PYQV    L  KIA+L+   ++  + D+
Sbjct: 240 AYRTGRGSITQRAVVSVEEIHN-RTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGIADM 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE S    + ++    R   P +++ +++  + ++  F  NM  L  G VP+ + LD  
Sbjct: 299 RDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDG-VPRTLSLDAF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           +  W++H+ +V+ RR+ +R++       IL GLL A   +DE+IA+IR     ++ +  +
Sbjct: 358 VHHWVSHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARNGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q  AILN++LR L  LE  +I+     L     + + ++ S  +Q   I+ 
Sbjct: 418 MELLGIDEAQAQAILNMQLRRLAALERQKIQDRHAELQRLIAEYEEIIASEARQRGIISE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+ E +        RRT        D     + +I ++ + V I+  G+++      
Sbjct: 478 ELAEIVERYGD-----DRRTEVL--YGFDGDVSMEDLIPQQQVVVTITRDGYVKRTRADE 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHG 587
                     +     +  D ++     +T + IL  +T G+ Y + A           G
Sbjct: 531 YRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTTLGRVYRVKAYEFVEAGRDAKG 590

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  L++    + I        Y     L++ +  G       ++   N   G   + +
Sbjct: 591 QHVANLMEFQPEERIAKVMELHSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAGVIAINL 650

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDV 700
             ++++   + V T D + ++  + + L F+ D   +  M R   GV    ++ G    +
Sbjct: 651 RDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDALRPMGRATSGVTGMKFRSGD-ELL 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               + +           Y +        +  RGG+G  V K
Sbjct: 710 SANVVSDDSHVFVVTEGGYAKRTAVQEYRVQGRGGLGIKVAK 751



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 15/196 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        ++    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 600 QPEERIAKVMELHSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAGVIAINLRDDDELVSA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
           +   T D I+L+S  G++    A +  + R  G A   +  +      ++++A V     
Sbjct: 660 MLVDTDDDIMLISRHGQSLRFTADD-DALRPMGRATSGVTGMKFRSGDELLSANVVSDDS 718

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGEN 667
            + VV+  G A      E     R G   +KV+   +++  +         D V VV E+
Sbjct: 719 HVFVVTEGGYAKRTAVQEYRVQGRGGLG-IKVAKLAEVRGGLVGGLIVGENDEVLVVMES 777

Query: 668 RKLLIFSIDQIPEMSR 683
            K++  ++ ++P   R
Sbjct: 778 GKVVRSTVSEVPARGR 793


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/758 (33%), Positives = 407/758 (53%), Gaps = 30/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++
Sbjct: 4   KNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE
Sbjct: 64  KSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R++ +A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP 
Sbjct: 124 VRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L LI+ PE  IE+LL +I GPDFPTGG I+   + I ESY  G+G   VR
Sbjct: 184 HNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTII-GTKGIRESYLTGKGKLIVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE  +G   I++ EIPY V KS L+ +IAEL+  ++I  ++D+RDES      V+
Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +DP +++  ++  + ++T F + M  +  G+ P+V  L  +L  +L HR+ V+ 
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQ-PKVFNLKELLNIFLEHRKNVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ + ++    R  IL+GLLIA  ++DE+IAIIR   N +K +  ++ +F LT+ Q  A
Sbjct: 362 RRTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLKFKLTQIQAQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL  L +LE+ ++  E++ +     +++ +L   K+ W  I+ E++E+K  ++   
Sbjct: 422 ILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
                R T  E          + ++   P  V I+   +I+ L   +  L     K    
Sbjct: 481 -----RKTLIEEEEK-SDITIEDILPDNPEVVCITQDSYIKRLPLSTYQLQRRGGKGLNT 534

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                 D +   +   T   + L S  GK Y L    L   S +  G  I+  +++++++
Sbjct: 535 LANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETSRQSKGVPIKEYLNIDNDE 594

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +        V+SKG        E     + G   +K+  E+ +  V   +
Sbjct: 595 KITEIISVNEFPKNLYFFFVTSKGIVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTS 654

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDS 714
           G D + +  +    + F    + EM R  +GV      KD  +   + FK  + +  + +
Sbjct: 655 GNDEIMIFTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDDSVIGGVIFKESKQIVLVTT 714

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G     + N+    + KRGG+G    K  P++G  + 
Sbjct: 715 YGIGKRVNPNEFS--VQKRGGMGVRAIKITPKTGDLVG 750



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/444 (12%), Positives = 143/444 (32%), Gaps = 37/444 (8%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            A  +  L    D   E    V+    +S + +   E + +   + T+      +     
Sbjct: 374 RAHILEGLLIALDHLDE----VIAIIRQSENAEKAREKLMLKFKL-TQIQAQAILDMRLH 428

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
               +  + +L+E    +  +       + +    RV   +   I     DE   +I  E
Sbjct: 429 QLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADERKTLIEEE 488

Query: 411 DKPKP-----VMVSRFSLTENQVDAILNLRL--RSLRKLEEYQIKSELDNLLAEKEKI-- 461
           +K        +  +   +   Q   I  L L    L++     + +  +N          
Sbjct: 489 EKSDITIEDILPDNPEVVCITQDSYIKRLPLSTYQLQRRGGKGLNTLANNNDDVITSFVV 548

Query: 462 ------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                   L ++  + +     E+ E       S  +  +     +        +     
Sbjct: 549 TSTRSTLFLFSNKGKVYALKTYELDETSRQ---SKGVPIKEYLNIDNDEKITEIISVNEF 605

Query: 516 EKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            K      ++++G ++              + A+   E D L         D I++ +  
Sbjct: 606 PKNLYFFFVTSKGIVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKK 665

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G A      ++       + +   I L  +  ++   ++  + ++++V++ G    V  +
Sbjct: 666 GNAIRFHEKDVREMGRIAQGVIG-IKLRKDDSVIGGVIFKESKQIVLVTTYGIGKRVNPN 724

Query: 630 EIIANTRKG--KTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           E     R G     +K+   + + + +      D + +  +  +++   ++ IP +SR  
Sbjct: 725 EFSVQKRGGMGVRAIKITPKTGDLVGVKNVSENDEILISTKRGQIIRIPVNNIPILSRNS 784

Query: 685 KGVRLQSYKDGGISDVICFKICEG 708
           +GV+L    +     V+   + E 
Sbjct: 785 QGVKLVKLNEDDY--VVSIDLVEN 806


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 406/765 (53%), Gaps = 28/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S      N + V+L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ M+EMG
Sbjct: 1   MSESFDHTPHNYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 61  VTPDKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  +L+ +++D VDF+D Y++E+ EPV  PS+FPN+L NG +GIAV
Sbjct: 121 AAAMRYTEARMSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E  +A   L+ NP++S+ +L+E + GPDFPTGGI++  +  I ++Y+ 
Sbjct: 181 GMATNIPPHNLGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVM-GKSGIRKAYQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR+R  +E++      IVVTEIPY V K++L+E+IAEL   K+I  +  + DES
Sbjct: 240 GKGKIIVRSRVEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R    ++++ +++  + ++  F  NM  +    VP++M L  IL ++L
Sbjct: 300 GREGMRIVVEVRRDTSANVVLNNLYKYTALQVTFGFNMLAI-DKGVPKIMSLKEILTKYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            ++ EV+ RR+ F  +  + R  IL+GL  A   IDEIIAIIR        K  ++ RF 
Sbjct: 359 EYQIEVIRRRTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIERFE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +  Q  AIL++RL  L  LE  +I++E ++L+    ++  +L+S       I  E+ ++
Sbjct: 419 FSPIQAQAILDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIMAIIEDELADI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F      G RRT          +   + +IE+E + + +++ G+I+           
Sbjct: 479 KNRF-----PGERRTELRVGEL--TSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   + D+++  +   T D +L  +  GK Y     ++        G  +  
Sbjct: 532 RGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIPVVN 591

Query: 593 LIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   +   +I+     D    L  V+  G     + S        G   L +  +++
Sbjct: 592 LLNIEKEEYVKEIIVLHPSDEDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNMREDDE 651

Query: 650 MKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G  N   + F+      M R   GVR    ++G    V    +  
Sbjct: 652 LINVLVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGMKLREGDYV-VGAAVLNP 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +    R Y +        +  RGG G        +SG+   
Sbjct: 711 ESNVLVVTERGYGKQTPASEYAVKNRGGKGIKTSNISAKSGQLAG 755



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E     K  +     +++     ++  G ++     +        L AL+ +E D L  
Sbjct: 595 IEKEEYVKEIIVLHPSDEDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNMREDDELIN 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPA--GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            L  +    I++ S +G A T       ++     G      + L     +V A V +  
Sbjct: 655 VLVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRG---MKLREGDYVVGAAVLNPE 711

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD-HVAVVGE 666
             +LVV+ +G       SE     R GK      +   S  ++  +V   GD  + V+ +
Sbjct: 712 SNVLVVTERGYGKQTPASEYAVKNRGGKGIKTSNISAKSG-QLAGIVSTEGDEDLMVMTD 770

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              ++ F+I  I   SR   GV++    DG     I 
Sbjct: 771 QGVVIRFNIASISVTSRATLGVKMIRLDDGAKVSSIT 807



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554
            R D   +   +   +   ++ S+ G+         R +   +  +  +  +EGD +  A
Sbjct: 646 MREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGMKLREGDYVVGA 705

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
              +    +L+++  G     PA         G+ I+       +  +      +    L
Sbjct: 706 AVLNPESNVLVVTERGYGKQTPASEYAVKNRGGKGIKTSNISAKSGQLAGIVSTEGDEDL 765

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +V++ +G       + I   +R   G   +++    K+  + K+
Sbjct: 766 MVMTDQGVVIRFNIASISVTSRATLGVKMIRLDDGAKVSSITKI 809


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/778 (32%), Positives = 406/778 (52%), Gaps = 45/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N  V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+LL    E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    + ++    R     +++ +++  + ++  FP NM  L  G VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++  
Sbjct: 372 WVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+ E +        RRT        D     + +I +E + V I+  G+         RS
Sbjct: 492 EIVEKYGDE-----RRTRIV---PFDGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                  +     +E D +       T   +L  +  G+ Y      L  G     G+ +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG-- 696
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              DV+     +   ++ + G  Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEG-GYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRI 563
            ++    V+ + RG ++  +    + +      A++ ++      D L  A    T   +
Sbjct: 624 YDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDL 683

Query: 564 LLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVV 617
           LL+S  G++    A +     +GR    +    +    +  ++   V D       L VV
Sbjct: 684 LLVSRAGQSLRFHADDDTLRPTGRA--TSGVTGMRFREDDYLLAMDVVDPSWQDADLFVV 741

Query: 618 SSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G A      +     R G   K    V +   +   +    GD V  +  + K++  
Sbjct: 742 TEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRS 801

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++ ++    R   GV       G     + 
Sbjct: 802 AVVEVSRTGRTTQGVTFAKPDAGDRIIAVA 831


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/759 (34%), Positives = 412/759 (54%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             NV+ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++ L   + +K
Sbjct: 8   NHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSLSHRSPYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD SVYD+LVR+AQ F  + PL+ GQGNFG++DGD+AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++AE +L  +++D VDF   Y++  SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H + E+ +A +  IDNPE SIE +++ + GPDFPTGGII   R+ I ++Y  GRG  +VR
Sbjct: 188 HRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIF-GRKGITDAYTTGRGRIKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+ G     I++ E+P+QV KSRLIE IA+L+  K I  + +IRDES  +   V+
Sbjct: 247 AKTHIEQKGN-KEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + M+  F + M  +     P+V  L  +   +L HR+ V+ 
Sbjct: 306 MELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKE-PKVFNLMELFDLFLNHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ F ++    R  IL+GL IA  NIDE+I IIR      + +  ++SRFSL+E Q  A
Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSRFSLSEIQAKA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L  LE  +I++EL  LL     ++ +L S ++    I  E+ E+ E +    
Sbjct: 425 ILEMRLRRLTGLEIEKIENELAELLKTIAYLEGILKSEEKINQIIREELIEIGEKYRTP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E+         + +I  EP+ V I++RG+I+                 +A
Sbjct: 484 ----RRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKLYEKQHRGGKGKTA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI+L  ++
Sbjct: 537 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEGSRTAKGKAVVNLINLQPDE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVK 655
            I+       +     L+  +  G       SE       G   + +   +++    +VK
Sbjct: 597 KIMAIIPTTDFSEEKGLVFFTRNGIVKRTNLSEYSNIRSNGVRAINLDENDELVEAKIVK 656

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWID 713
                + V  +    + F ++   E+ R  +GV    +K DG           E    + 
Sbjct: 657 PETKWLFVATKKGLCIRFKVEDAREIGRVSRGVTAIKFKIDGDYVCGAATLESEEDEILM 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +           R G G +  K   ++G  + 
Sbjct: 717 LSEKGLGKRTTASEYREQNRAGKGVISMKLTSKTGDVVG 755



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +      A +      +E   V  +  G ++              + A++  E D L  A
Sbjct: 593 QPDEKIMAIIPTTDFSEEKGLVFFTRNGIVKRTNLSEYSNIRSNGVRAINLDENDELVEA 652

Query: 555 LHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTC 612
                  + L + +  G        +          +  +   ++ +     A +     
Sbjct: 653 KIVKPETKWLFVATKKGLCIRFKVEDAREIGRVSRGVTAIKFKIDGDYVCGAATLESEED 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENR 668
           ++L++S KG       SE     R GK  + +       + + +V+      +  +    
Sbjct: 713 EILMLSEKGLGKRTTASEYREQNRAGKGVISMKLTSKTGDVVGVVMVEEDKDLMCLTSVG 772

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           K++   ++ I +  R   GV++ S +      V+    C+
Sbjct: 773 KMIRVDMETIRKAGRNTSGVKVVSVEKK--DKVVSMAKCQ 810


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/756 (35%), Positives = 423/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG  +   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGG-NIMGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L  G VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALVNG-VPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYAD-----D 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT      R D       ++E+E + + I+N+G+I+                ++A+  K
Sbjct: 479 RRTKIL---RDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++  
Sbjct: 536 DGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQ 595

Query: 605 AFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
               D    +   ++ ++ KG       S      + G   +K    +++  V  V   +
Sbjct: 596 VLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNE 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGR 717
            V +V +    L F++DQ+ ++SR   GV+  +       +VI F  + +       +  
Sbjct: 656 EVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKD--DEVISFDLVKDNEFLAVISEN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G    K   ++G    +
Sbjct: 714 GYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIR---- 531
           ++  +   +  T  G       ++   +  T   A+    E +   + I+ +G ++    
Sbjct: 564 LKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSL 623

Query: 532 --SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                     + A+ F EGD L         + +++++  G +       L     +   
Sbjct: 624 SLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIG 683

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVS 645
           ++  I LN + ++++  +      L V+S  G     E S      R GK      +   
Sbjct: 684 VKA-ITLNKDDEVISFDLVKDNEFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKK 742

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           + +          D + ++ +  +++    + I  +SR   GV L++   G  + V   K
Sbjct: 743 TGDVACAKALKKDDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAK 802


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/858 (30%), Positives = 411/858 (47%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+I  HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/765 (31%), Positives = 409/765 (53%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M  + +       K
Sbjct: 6   ERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 66  SARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ ++++ IL  +D+D VDF++ +++  +EP V P+K P LL NGTSGIAVGMAT++  H
Sbjct: 126 KLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +A IDN EI+I++L+++II PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 186 NLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGI-IYGYDGVRDAFHTGRGRIVLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEVG     I+VTEIPYQV K+ +I + AEL+  ++IP + +IRDES      +++
Sbjct: 245 KINFEEVGN-RSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIVY 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + ++T F +N   L  G  P+ + L  I+  ++ HR EV+ R
Sbjct: 304 ELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKG-RPEQLNLKNIIHHFVDHRHEVVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           R+ F ++    R  IL+G +       ++D+ IAIIR+     + K  ++  F L++ Q 
Sbjct: 363 RTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQA 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I++E D ++      + +L +  +++  I  E+ E+KE +  
Sbjct: 423 QAILDLRLARLTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGD 482

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  +      + +I  E + + IS+ G+I+              V  
Sbjct: 483 E-----RRS---EIDYSGGEMSIEDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGN 534

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK + L    +  G     G A+Q LI++  
Sbjct: 535 RAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEP 594

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  I             Y +   +++V+  G                G   +++   +++
Sbjct: 595 DDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICE 707
                 +GD  + +  +N K + F  ++   + RG  GVR  S +D   +  +I     E
Sbjct: 655 LGARLTSGDSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVE 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             T +  + + Y +        +  RGG G +      ++G  ++
Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIA 759



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 123/372 (33%), Gaps = 31/372 (8%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            D I+         +      F +   +      K        ID     +  ED    +
Sbjct: 445 YDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDL---I 501

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              +  LT +    I    L   +      + +       E + ++ ++ +   Q+    
Sbjct: 502 PDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDE-DFLEYIVAATNHQYMLFF 560

Query: 477 CE------IREVKEIFSKSTDLGRRRTTFCEVSRADKA-------TLQQAMIEKEPITVV 523
            E      +R  +         GR       +   DK         L+ A    +   V+
Sbjct: 561 TEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVM 620

Query: 524 ISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++  G I+        +  +  ++A+  ++ D L  A        I++ + +GK    P 
Sbjct: 621 VTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPE 680

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANT 635
                  G G      I L  + +++   V +      +LVVS KG        +     
Sbjct: 681 -EKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLVVSEKGYGKRTAVEDYRVTN 739

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R GK  + ++  EK   +  +  VT +  + ++ ++   +  S++++  M R  +GV++ 
Sbjct: 740 RGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVI 799

Query: 691 SYKDGGISDVIC 702
           + K       I 
Sbjct: 800 NLKGNDSIAAIA 811


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 391/763 (51%), Gaps = 28/763 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + N   +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+ 
Sbjct: 2   DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  A
Sbjct: 62  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM
Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+
Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYETGK 240

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VRA+  +E    G   I+V+EIP+ V K+ L++KIA+L   K I  +  +RDES +
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L H
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYLDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           + +V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF L 
Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL  L  LE  ++++E  +L A+      +L   ++    I  E+ ++++
Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F      G +R T    S    +   + +IEK+ I + +++ G+I+             
Sbjct: 480 RF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  L+
Sbjct: 533 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNLL 592

Query: 595 DLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L   + + T            L  ++  G       SE       G   L +   +++ 
Sbjct: 593 QLEKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELS 652

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V+   G+   ++G +    + F    +  M R   GVR  + ++     V    + +  
Sbjct: 653 NVLTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRGINLRENDYV-VGSGVLGKDD 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + Y +        +  RGG G        ++G    
Sbjct: 712 QVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINIPENADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  N  +V + V     ++
Sbjct: 655 LTTDGNQNILIGTHLGYAVTFKESDVRAMGRTAAGVRG-INLRENDYVVGSGVLGKDDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       +E     R GK      +   +     ++V   G  + V+  N  +
Sbjct: 714 LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVIVVDKGKDIMVITTNGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTE 811


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/756 (35%), Positives = 420/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L+++I  PDFPTGG  +   E +  +Y  GRG  ++RA 
Sbjct: 187 LGETIDALIASIDNPNITIEELMKHIKAPDFPTGG-NIMGLEEVKNAYTTGRGKVKLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K++  + D+RDES      ++  
Sbjct: 246 ARIEE-SKGRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L  G VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALVNG-VPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMQRFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  E++  +LN+       I  E+ E+K  +S       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSD-----D 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT      R D       ++E+E + + I+N+G+I+                ++A+  K
Sbjct: 479 RRTKIL---RDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++ +  
Sbjct: 536 DGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVTQ 595

Query: 605 AFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
               D        ++ ++  G              + G   +K    +++  V  V   +
Sbjct: 596 VLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKTGIIAIKFDEGDELIDVKLVEKNE 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGR 717
           +V +V +    L F++DQ+ ++SR   GV+  +       +VI F  + +       +  
Sbjct: 656 NVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKD--DEVISFDLVKDNEFLAVISEN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G    K   ++G    +
Sbjct: 714 GYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 84/240 (35%), Gaps = 15/240 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIRSLKS 535
           ++  +   +  T  G       ++   +  T   A+    E +   + I+  G ++    
Sbjct: 564 LKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKEDDQFIIFITKNGKVKKTSL 623

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                     + A+ F EGD L         + +++++  G +       L     +   
Sbjct: 624 DLYENIRKTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLSRNAIG 683

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVS 645
           ++  I LN + ++++  +      L V+S  G     E S      R GK      +   
Sbjct: 684 VKA-ITLNKDDEVISFDLVKDNEFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKK 742

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           + +          D + ++ +  +++    + I  +SR   GV L++   G  + V   K
Sbjct: 743 TGDVACAKALKNEDEILLISKKAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAK 802


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/762 (34%), Positives = 402/762 (52%), Gaps = 36/762 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +++V +   +   YL YA+S I  RA+PD RDG KPVHRRI++AM +MG+   +A+KKSA
Sbjct: 6   IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VYD++ R+AQ F  RYPLI GQGNFG+IDGD+ AA RYTEAR+
Sbjct: 66  RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L  +D+D VDF D ++    EPVV P++ PNLL NG+SGIAVGMATSIP HN+
Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185

Query: 197 QEICEAALALID----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +E+ +A   LI+      +I+ E L+  I GPDFPTGGIIV  RE I+  Y  GR    V
Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIV-GREGILHGYSTGRSRLTV 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R    +EE   G + I++TEIPYQV K+ LIE+IAEL+   ++  + D+RDES      +
Sbjct: 245 RGVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSI 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R   P  ++  ++  + +++ F +NM  L     P+++PL   L+ ++ HR+EVL
Sbjct: 305 VIELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNE-PRLLPLKRALQVFIQHRQEVL 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ F +     R  IL+GLLIA  N+D +IAIIR     +        RF LTE Q  
Sbjct: 364 TRRTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIERFKLTEVQAQ 423

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++LR L  LE  +I+ E   +      ++ LL + ++    I  +++E+ E +   
Sbjct: 424 AILDMQLRRLAALERQKIEDEYREVTERIAYLEDLLANPRKILALIQTDMKELAEKYGD- 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT     + A +   ++ ++  E + + ++ RG+I+                + 
Sbjct: 483 ----NRRTRIA--AEAKEDFSEEDLVADEAVLITLTARGYIKRVNASAYRTQNRGGKGVI 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
               KE D +   L A T D +L  +  GK Y   A  +        G     ++ L  N
Sbjct: 537 GQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTDKGIPAINVLALEAN 596

Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I   V    +      L+ +  G    V+ SE  +    G   + + + +++  V   
Sbjct: 597 ERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVRLT 656

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWID 713
            G  HV +V E    + F+  ++  M R   GV   S ++G    V    I  EG   + 
Sbjct: 657 DGSRHVLLVTEQGYTVRFAESEVRSMGRQASGVTGISLREG--DRVASMDIVEEGGGLLL 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKFLSS 753
              + + +        L  R   G +    K   ++GK   +
Sbjct: 715 VTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVA 756



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 14/215 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +      +           ++ +  G ++ +            L A+  + GD L   
Sbjct: 594 EANERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWV 653

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +  +LL++  G         + S       +   I L     + +  + +    L
Sbjct: 654 RLTDGSRHVLLVTEQGYTVRFAESEVRSMGRQASGVTG-ISLREGDRVASMDIVEEGGGL 712

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE-----KMKLVVKV-TGDHVAVVGENR 668
           L+V++KG    V   E +   R     + +  +      K+ +   V   D VA+   + 
Sbjct: 713 LLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQENDEVALFSASG 772

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             L   +  IP   R  +GV +    +G     I 
Sbjct: 773 VALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIA 807


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/762 (32%), Positives = 409/762 (53%), Gaps = 27/762 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N ++ + + V  + L   ++  Y+ YA+S I  RA+PD RDG KPV RRI++AM E+GL 
Sbjct: 5   NGSSDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKKSAR+VGE +GK HPHGD ++Y+++VR++Q F  RYPL+ GQGNFG+IDGD  A
Sbjct: 65  HSQPFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  + E +L  +DED VD+   ++E   EP V PS+ PNLL NG++GIAVGM
Sbjct: 125 AMRYTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+ +A   L+DNP++ + +L+ ++ GPDFPTGG+I+  R+ I+++Y  GR
Sbjct: 185 ATNMPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIM-GRDGIIDAYTTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR    +E+  RG   IV+T+IPY V KS LIE I + + A ++  + D+RDES  
Sbjct: 244 GKIVVRGCAEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++   +R  DP L++  ++  + ++T F +    L  GR  + + L G+L+ ++ H
Sbjct: 304 EGIRLVLELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVE-LNLKGLLQIFIDH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLT 424
           RR V+ RR+ +R++  + R  IL+GL+ A   ID +IA+IR+ + P   K  +V     T
Sbjct: 363 RRMVVRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELGFT 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q  AIL++RL+ L  LE+++++ EL  L+A+  +   +L    +  + +  E+ EVK 
Sbjct: 423 EAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEVKR 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536
            +      G  R T  E S  D     + +I +  + V ++  G+I        R     
Sbjct: 483 AY------GDERRTVIEDSVDD--VSYEDLIPETEVVVAMTRDGFIRRMPLQDYRCQARG 534

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLID 595
              +     K  D + +     T   + L +  G+ ++L    +   + G G+ +   I 
Sbjct: 535 GKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTFIS 594

Query: 596 LNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           L+  + +VT      +    + +V+  G A  +   E+   TR G+  L +  ++ +  V
Sbjct: 595 LDEGESVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDTIARV 654

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               G D + +     + L  S  +     R  KGVR        +  V C  I  G   
Sbjct: 655 RFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKLDPDDLV-VGCDVIMPGRQV 713

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +     +        +  RGG+G    +   R+G  + +
Sbjct: 714 LFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGA 755



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 493 GRRRTTFCEVSRADKATLQQAMI-EKEPITVVISNRGWIRSLKSHS------VDLSALHF 545
           G+  +TF  +   +     +    E      +++  G  + L               L  
Sbjct: 586 GKHVSTFISLDEGESVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGL 645

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +E D++         D++LL +  G+   +            + ++  I L+ +  +V  
Sbjct: 646 EEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVRG-IKLDPDDLVVGC 704

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHV 661
            V     ++L +S  G        E   + R G     +   E+   +V        D +
Sbjct: 705 DVIMPGRQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGAWGVADDDEI 764

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFK 704
            V+    +++ FS   +  +SR   G+ L    +G  ++DV   +
Sbjct: 765 MVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIR 809


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/756 (35%), Positives = 423/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG  +   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGG-NIMGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L  G VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALVNG-VPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYAD-----D 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT      R D       ++E+E + + I+N+G+I+                ++A+  K
Sbjct: 479 RRTKIL---RDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++  
Sbjct: 536 DGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQ 595

Query: 605 AFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
               D    +   ++ ++ KG       S      + G   +K    +++  V  V   +
Sbjct: 596 VLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNE 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGR 717
            V +V +    L F++DQ+ ++SR   GV+  +       +VI F  + +       +  
Sbjct: 656 EVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKD--DEVISFDLVKDNEFLAVISEN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G    K   ++G    +
Sbjct: 714 GYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIR---- 531
           ++  +   +  T  G       ++   +  T   A+    E +   + I+ +G ++    
Sbjct: 564 LKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSL 623

Query: 532 --SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                     + A+ F EGD L         + +++++  G +       L     +   
Sbjct: 624 SLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIG 683

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVS 645
           ++  I LN + ++++  +      L V+S  G     E S      R GK      +   
Sbjct: 684 VKA-ITLNKDDEVISFDLVKDNEFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKK 742

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           + +          D + ++ +  +++    + I  +SR   GV L++   G  + V   K
Sbjct: 743 TGDVACAKALKNEDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAK 802


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/770 (30%), Positives = 406/770 (52%), Gaps = 30/770 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +  N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+
Sbjct: 1   MADEENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMN 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++D
Sbjct: 61  ELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  G
Sbjct: 121 GDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +
Sbjct: 181 IAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IR
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  IL 
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAIN-HGKPETMSLKQILV 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++
Sbjct: 359 AYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELIN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  E+
Sbjct: 419 RYQLSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPERIDQIIYQEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++   F      G  R T  +V     +   + +I++E + + ++++G+I+        
Sbjct: 479 LDIANKF------GDERRTELQVGDV-SSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFH 531

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  ++  + D ++  +   T D +L  S  GK Y +    +     +  G  
Sbjct: 532 TQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIP 591

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +  L+ L+  + +                L   +  G       SE     + G   + +
Sbjct: 592 VINLLGLDAGERVQAVINVRGDAATSKDSLFFTTKLGTVKRTAVSEFTNIRQSGLRAINL 651

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V+   G  ++ +   +   + F+   +  M R   GVR  + +D     V  
Sbjct: 652 RDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYV-VGA 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  G   +    + Y +        +  RGG G        ++G    
Sbjct: 711 DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                +      +  G ++              L A++ ++ DSL   L  +    I++ 
Sbjct: 613 DAATSKDSLFFTTKLGTVKRTAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIA 672

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  G A +    ++ +       ++ + +L     +V A +      +L+++ KG     
Sbjct: 673 SHSGYAVSFAESDVRAMGRTASGVRGM-NLRDKDYVVGADLLIPGDNVLIITEKGYGKQT 731

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK +    +   +     L V    + + +  ++  ++ F+   +    
Sbjct: 732 AVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITG 791

Query: 683 RGK-GVRLQSYKDG 695
           R   GV +   ++G
Sbjct: 792 RATLGVHVIKIEEG 805


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 405/757 (53%), Gaps = 29/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   + + YL Y++S I  RA+PD+RDG KPVHRR++  M E+GL  G  +KK
Sbjct: 4   DKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGYKK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD +VYDSLVR+ Q F  RYPLI GQGNFG++DGDS AA RYTE 
Sbjct: 64  SARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +L+ ++++ V F   +++   EP V PS  PN+L NG SGIAVGMAT+IP  
Sbjct: 124 RMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIPPQ 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A+I+NPEI+I++++E+II PDFPT GI +   E + ++Y  GRG   +RA
Sbjct: 184 NLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGI-IYGYEGVKQAYHTGRGKVVIRA 242

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  VE     G   I+VTE+PYQV K RLIEKI ELI  K+I  + DIRDES  D   ++
Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRLV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R     +++  ++  + M+  F + +  L  G VP+V+ L  +++ +L HR E++ 
Sbjct: 303 IELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLNLKEMMEAYLKHRNEIVL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+++ + A +++  IL+GL I   N+DE+I+ IR        +  ++ +F LTE Q  A
Sbjct: 362 RRTTYELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEKFGLTELQSKA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L +RL+ L  +E  +I+ + +  LA  E++  +L + +++   I  E+ +VK+++    
Sbjct: 422 VLEMRLQRLTGMERDKIEKDYNETLALIEELRFILANPEKRMQIIKDELLKVKQVYGDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               RRT   E+   +     + MI +E + + I++  +I+                ++ 
Sbjct: 481 ----RRT---EIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVSGYRRQARGGKGVTG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              +  D ++    A T + IL  +  G+ + L    +        G ++  +++L   +
Sbjct: 534 AQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAARGRSLANIMELQPGE 593

Query: 601 DI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I   +    +D    +++ ++KG+    E        R G   + +   +++       
Sbjct: 594 KIKAYINVKTFDDPLFIIMATAKGSIKKTEIEAFSRPRRNGIAAITIEDGDELIDARLTD 653

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+H  ++ +N    + F+   +  M R   GV+  S  +G     +        + +   
Sbjct: 654 GEHDIILAKNTGYAVRFAEKDVRPMGRTAMGVKGISLDEGETCISMVTSKRPDTSLLAVT 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + +        L +RG  G +  K   + G  + 
Sbjct: 714 DNGFGKRSKVEDYRLTRRGAKGVITLKAHEKVGHLVG 750



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +     KA +     +     ++ + +G I+  +  +        ++A+  ++GD L 
Sbjct: 588 ELQPGEKIKAYINVKTFDDPLFIIMATAKGSIKKTEIEAFSRPRRNGIAAITIEDGDELI 647

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-ST 611
            A        I+L    G A      ++         ++  I L+  +  ++        
Sbjct: 648 DARLTDGEHDIILAKNTGYAVRFAEKDVRPMGRTAMGVKG-ISLDEGETCISMVTSKRPD 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             LL V+  G     +  +     R  K  + + + EK+  +V +      D + ++  N
Sbjct: 707 TSLLAVTDNGFGKRSKVEDYRLTRRGAKGVITLKAHEKVGHLVGLLDVNDSDDLIIITSN 766

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +    +  I    R   GVR+     G       
Sbjct: 767 GIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATA 802


>gi|332535130|ref|ZP_08410940.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 445/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EPVV PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +E+LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTEEHGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRCILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR  +R+  +  R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K+  +L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLAQILGSERRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S   KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 AEMYGD-----DRRSPVIERSE-AKALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  + +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRSGDGFRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTPGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           +   +    ++L+F +  +P++S+GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLSKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/763 (34%), Positives = 412/763 (53%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + ++ V  V L   + + YL Y++S I  RA+PD++DG KPVHRRII+ M  +GL   
Sbjct: 2   TEIYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++KSAR+VG+V+GK HPHGD S+YD+ VRLAQ F  RYPL+ GQGNFGNIDGDSAAA 
Sbjct: 62  GPYRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RMT++ + +L+ +++D VDF+  ++EE+ EPVV PS+FPNLL NG++GIAVGMAT
Sbjct: 122 RYTELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++P HN+ E+    ++ IDN EI+I++L+  I GPDFPTG   +  RE I E+Y+ GRG 
Sbjct: 182 NMPPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGA-YIMGREGIKEAYKTGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +EE       IVV EIPYQV KS LI KIAEL+  K I  +  IRDES    
Sbjct: 241 IQVRAVAEIEEEKNKR-RIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R  +P++++  ++  + M+T F +    L  G VP+++ L  ++  ++ H+ 
Sbjct: 300 IRIAIDLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNG-VPKILNLKELISYYVDHQI 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTEN 426
            V+ RR+ F ++    R  I++GL IA  NID II I+   RN+D+ K      F LTE 
Sbjct: 359 NVVTRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++R+R L  LE  ++  E   L+    +   +L + ++  + I  E+ E+++ F
Sbjct: 419 QGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538
                   RRT     +        + +I++E + + ++  G+I        +  K    
Sbjct: 479 GD-----LRRTVIKSAAG---EIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGR 530

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +SAL  +E D +       T D IL  +  G+AY L A  +   S +  G AI  +++L
Sbjct: 531 GISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNL 590

Query: 597 NHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           + N+    I+    YD    +++ +  G    +   EI    + G   + +   + +   
Sbjct: 591 SANEKVQSIIPVREYDPNLNIVMATKDGIIKRISFEEIKNIRKSGINAMTLRDGDSIIGT 650

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLT 710
              TG D + +V +    + F  D++    R   GV+     KD  +         + L 
Sbjct: 651 RLTTGEDELILVTKKGMSIRFKEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSADKYLL 710

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I   G  + +        +  R G G +  K   ++G  +S+
Sbjct: 711 VISQNG--FGKLTPIDEYRIQSRAGKGIITYKVKDKTGDLVSA 751



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 16/212 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
            +   ++ +     +     V+ +  G I+ +            ++A+  ++GDS+    
Sbjct: 592 ANEKVQSIIPVREYDPNLNIVMATKDGIIKRISFEEIKNIRKSGINAMTLRDGDSIIGTR 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                D ++L++  G +         L      G      I+LN + ++V   V  +   
Sbjct: 652 LTTGEDELILVTKKGMSIRFKEDEVRLTGRTSMG---VKAIELNKDDEVVGFDVVSADKY 708

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRK 669
           LLV+S  G   +    E    +R GK  +    K  + + +   +    D + ++     
Sbjct: 709 LLVISQNGFGKLTPIDEYRIQSRAGKGIITYKVKDKTGDLVSAKIIDKNDEIMMITSEGI 768

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           ++    + I  M R   GV+L + KD  +  V
Sbjct: 769 IIRIETEGISVMGRSTSGVKLMNIKDSEVVAV 800


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 409/762 (53%), Gaps = 34/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    +   ++E ++ Y++S I  RA+PD+RDG KPVHRR+++AM+E+GL  G A+KK
Sbjct: 8   ERILPRLIDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA +VG+V+GK HPHGD SVYD+LVR+ Q F  RYPL+ GQGNFG++DGD+AAAYRYTEA
Sbjct: 68  SATVVGDVLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L  +D++ VDF   +++   EP V P+ FPNLL NG++GIAVGMAT+IP H
Sbjct: 128 RLTRMAVEMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +ALIDNPE+    L + + GPDFPTGG  +  R  I +    GRG   +RA
Sbjct: 188 NLREVISAVIALIDNPELDGPALRKLVKGPDFPTGG-YIYGRAGIADYQDTGRGRIIMRA 246

Query: 255 RWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +EE    G   IVVTE+PYQV K++L+  IAEL+  +++  +  +RDES +D   V+
Sbjct: 247 RAVIEEKESSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVV 306

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-----VPQVMPLDGILKEWLAHR 368
               R   P +++  ++  + M++ F + M  L         VP+V+ L   L+ ++AHR
Sbjct: 307 IELKRDAIPRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHR 366

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            EV+ RR+ F +     R  IL+GL IA  NIDE+IA+IR   +       + SRF L+E
Sbjct: 367 HEVIVRRTQFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSRFGLSE 426

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILN+RL  L  LE  +++ EL  + A   ++  +L S  ++ + +  E+ +V E 
Sbjct: 427 RQAEAILNMRLAKLTGLERDKLEEELVEVRAFILEMRGILESRDRRMSILKGELIQVAET 486

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           +        RRT   E+   +     + +I +E + V I++ G+I+              
Sbjct: 487 YGDE-----RRT---EIVSDEGEFSIEDLIAEEEMVVTITHGGYIKRTPLSLYNRQGRGG 538

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              ++   KE D ++    A T   +L+ + DG+ + L    L        G+ I  LI+
Sbjct: 539 RGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNTRGKPIVNLIN 598

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +  +  I    V   +  T  LL  +  G       S+       G   +K+  ++++  
Sbjct: 599 VTPDTRIRAIVVTKEFSDTEFLLFCTRNGTVKKTALSQYSNPRANGIKAIKIEQDDELMD 658

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           V   +G + V +   +   + F    + EM R   GV+    +      V    I    T
Sbjct: 659 VQVTSGNNDVVLATRHGLSVRFHESDVREMGRDTTGVKGIELRPSD-QLVGMVVIKREAT 717

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +    R   +        + KRGG G L      ++G  ++
Sbjct: 718 LLVVTERGLGKCSEVSEYRVQKRGGKGILTLNRTVKTGDVIA 759



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 12/213 (5%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
           +A +           +  +  G ++              + A+  ++ D L         
Sbjct: 606 RAIVVTKEFSDTEFLLFCTRNGTVKKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGN 665

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           + ++L +  G +      ++         ++  I+L  +  +V   V      LLVV+ +
Sbjct: 666 NDVVLATRHGLSVRFHESDVREMGRDTTGVKG-IELRPSDQLVGMVVIKREATLLVVTER 724

Query: 621 GNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G     E SE     R GK  L +     + + + L+  V  D + ++      +   + 
Sbjct: 725 GLGKCSEVSEYRVQKRGGKGILTLNRTVKTGDVIALMEVVPEDELMLMTRQGIAIRSKVS 784

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           +I    R   GV+L +  D      +   I + 
Sbjct: 785 EIRVTGRAAQGVKLVALDDLDGVSAVARVIPDD 817



 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 11/189 (5%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            K   S+ ++         ++ + D+    Q       + +  +  G         +R +
Sbjct: 630 KKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDVVLA-TRHGLSVRFHESDVREM 688

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  +  +  D L   +       +L+++  G             +  G+ I  L
Sbjct: 689 GRDTTGVKGIELRPSDQLVGMVVIKREATLLVVTERGLGKCSEVSEYRVQKRGGKGILTL 748

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                  D++         +L++++ +G A   + SEI    R   G   + +   + + 
Sbjct: 749 NRTVKTGDVIALMEVVPEDELMLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVS 808

Query: 652 LVVKVTGDH 660
            V +V  D 
Sbjct: 809 AVARVIPDD 817


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A + LIDNP   +++L+E + GPD+PT   I+   + I + Y 
Sbjct: 181 VGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E        +V++ +P+Q   S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYEMEN-----GEVVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+VL P++  +D + LM  +F  +++E  + +N+NV+ +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGLKDMLA 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  FR+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF 
Sbjct: 356 EWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK+E   L  E+ K++ +L S ++    I  E+ + 
Sbjct: 416 LSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKLEQILGSERRLKTLIKKELEKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +   V    +A  +Q ++  EP+TVV+S +GW+R  K H +D  A
Sbjct: 476 AETY------GDDRRSPLVVRGESRALTEQELLPTEPVTVVLSEKGWVRCAKGHDIDAGA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +  + + + + G+A++     L S R  GE I    +L   + +
Sbjct: 530 LSYKAGDGFLCAAQGRSNQQSVFIDSSGRAFSTDTHTLPSARSQGEPITTRFNLAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
               + +     L+ S  G  F+   +++I+  + GK  L + S  K     +V  D   
Sbjct: 590 EHVLLGEEQHHYLLASDAGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANP 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+F +D +P++++GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLVFGLDALPQLAKGKGNKIIGIPSERAKNREELLIHLHLVPADSAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKSSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/763 (33%), Positives = 406/763 (53%), Gaps = 29/763 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N ++E  +  V +   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  + L  
Sbjct: 3   ENNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLAS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F  RY L+ GQGNFGNIDGD AAA
Sbjct: 63  NGPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RMT++AE +L+ ++++ VDF   ++E + EP + P++FPNLL NG+SGIAVGMA
Sbjct: 123 MRYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E  +  +A IDN EISI +L + I GPDFPTG  I+   E I E+Y  GRG
Sbjct: 183 TNMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIM-GTEGIKEAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA   ++        IV+TE+PYQV KS LI KIAEL   K I  + +I D S   
Sbjct: 242 KITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRK 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++++  ++  + M+T F +    L  G  P+++ L  I++ ++ H+
Sbjct: 302 GINIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNG-RPEILNLKQIIRYYVDHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
            EV+ RR+ F +   ++R  I++GL IA  NID II I+R   ++ + K      F LTE
Sbjct: 361 VEVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFKLTE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++R+R L  LE  ++++E + L A+ +    +L +     N I  E+ E+KE 
Sbjct: 421 EQSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKEK 480

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537
           +      G  R T    +R D     + +I+KE + + ++  G+I        +  K   
Sbjct: 481 Y------GDLRRTVISHARTDIEI--EDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGG 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             +S+ + ++ D +K      T D IL  ++ G  + L A  +   S    G AI  L+D
Sbjct: 533 RGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLD 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+ ++ + +      YD     L+V+ KG        +     + G   +K++  +K+  
Sbjct: 593 LDEDERVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKDYKNIRKSGIIAIKLNEGDKLID 652

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           V     D  V +V +    + F+ +Q+ +  R   GV+        I  V    + +   
Sbjct: 653 VHLTKDDEDVILVTKKGLSIRFNEEQVRKSGRNSMGVKSMDLDKDDIV-VSSDLVVDDKY 711

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   Y +           RGG G L  K   ++G   S+
Sbjct: 712 LLVISENGYGKLTEIDKYRPQNRGGKGLLTYKITNKTGDVASA 754



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 81/234 (34%), Gaps = 18/234 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +    D    R T        +      + +     + +   ++++ +G I+      
Sbjct: 571 KAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKD 630

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   + A+   EGD L         + ++L++  G +       +     +   ++
Sbjct: 631 YKNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVRKSGRNSMGVK 690

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SE 647
            + DL+ +  +V++ +      LLV+S  G   + E  +     R GK  L       + 
Sbjct: 691 SM-DLDKDDIVVSSDLVVDDKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKITNKTG 749

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +     V    D V ++  +  ++    + I    R   GV+L +  D  +  V
Sbjct: 750 DVASAAVVEKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNLTDAKVVAV 803


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/763 (31%), Positives = 406/763 (53%), Gaps = 34/763 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +   SL   +   YL YA+S I  RA+PD+RDG KPV RR++  M E+G  +   
Sbjct: 1   MTDQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+ IGK HPHGDQ VY+++VR+ Q F  R PLI GQGNFG++DGD+ AA RY
Sbjct: 61  YKKSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+  +AE++L  ++++ VDFR+ Y+    EPVV P++FPN+L NG  GIAVGM+T+I
Sbjct: 121 TEVRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + L+++P  +++ L++++ GPDFPT G  +  R  I ++Y  GRG   
Sbjct: 181 PPHNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAG-FICGRTGIRDAYLTGRGSVT 239

Query: 252 VRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +RAR  ++ V     R    IVVTE+PYQV K+ L+EKIAEL+  K+I  + D+RDES  
Sbjct: 240 LRARAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDR 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  D  +++ ++F  + M+++  + M  +  G  PQV+ L  +L  ++ H
Sbjct: 300 EGMRVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNG-RPQVLNLVEMLNYFVEH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424
           RREV+ RR++F ++  + RV IL+GL  A   ++ II +IR      + +  +++RF+L+
Sbjct: 359 RREVVRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTRFALS 418

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q  AIL ++L+ L  LE  ++  E + L+    ++  +L+   +    I  E++EV++
Sbjct: 419 RVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREILDKEAKLREVIVQELQEVRK 478

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            +        RRT   +    D     + +I KE + + I+  G+I+          K  
Sbjct: 479 AYGTP-----RRTQIVDCESTDFTI--EDLIPKEEVVITITREGYIKRTPVSAYRTQKRG 531

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
            V    +  K  D ++    A T   +L+ +  G+ Y +    +      G G+AI  LI
Sbjct: 532 GVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLI 591

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L   + I   +    + S   ++  + +G     E SE       G   + ++ ++++ 
Sbjct: 592 ELPEGERIAGTIPVREFASGQFIVFATRRGIIKKTELSEYANIRSNGIVAMGIAEDDELV 651

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEG 708
            V K  G  H+ +     + + F    +    R  +G+     ++   ++ +      E 
Sbjct: 652 AVQKSDGSRHILISTFGGQAICFKESDVRPTGRMAQGIIGIRLRENDYVTGMSVVGRTED 711

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  +  +    ++        +  RGG G        R+G  +
Sbjct: 712 ILSL--SELGLSKRTPITEYPVHHRGGQGVATMYVTERTGGVI 752



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 13/207 (6%)

Query: 519 PITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              V  + RG I+           S  + A+   E D L     +  +  IL+ +  G+A
Sbjct: 612 QFIVFATRRGIIKKTELSEYANIRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQA 671

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                 ++       + I   I L  N  +    V   T  +L +S  G +     +E  
Sbjct: 672 ICFKESDVRPTGRMAQGIIG-IRLRENDYVTGMSVVGRTEDILSLSELGLSKRTPITEYP 730

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
            + R G+    +   E+   V+K       D   V+ +  ++    +  + +  R  +GV
Sbjct: 731 VHHRGGQGVATMYVTERTGGVIKTLPVHEDDEFMVITQQGQVARLKVSDVRQTKRLAQGV 790

Query: 688 RLQSYKDGG-ISDVICFKICEGLTWID 713
           ++ +  +G  + D    ++       +
Sbjct: 791 KVIALAEGDRVVDACLVELSAEEPVTE 817


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/852 (30%), Positives = 403/852 (47%), Gaps = 113/852 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++  
Sbjct: 5   KDDTGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAF 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KSARIVG+VIG+ HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++D
Sbjct: 65  ESGHLPERKYVKSARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+ + A  +L  +D++ VDF+  Y++   EP V P++FPNLL NG  G
Sbjct: 125 GDPPAAMRYTESRLARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGG 184

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P ++IE L E + GPDFPTGG+I+  R    ++
Sbjct: 185 IAVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMIL-GRAGTRQA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RAR  VEE+ +    ++ TEIPYQV K+ LIEKIAEL+  KRI  + D+R
Sbjct: 244 YTTGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   ++    R    D+++  ++  + ++T F  NM  L+ G  P++M L  +L 
Sbjct: 304 DESDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALN-GGRPELMNLKDLLL 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P         
Sbjct: 363 AFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMA 422

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               +      + L+E Q  AIL+LRL+ L  L   +I  EL  
Sbjct: 423 RDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKK 482

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+ EV+E+F+             E+  +D +   + 
Sbjct: 483 LADEIADYLDILRSRARIQAIVKHELAEVRELFATPRK--------TEIIDSDFSVEDED 534

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+++          K      S +  ++ D +     A+T   +L 
Sbjct: 535 LIAREDMVVTVSHAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLF 594

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL-NHNQDIVTAFVYDSTC------KLLV 616
            S  G+AY      L   +    G+A+  ++ L N  + I T               ++ 
Sbjct: 595 FSDQGQAYKEKVWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMF 654

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSI 675
            ++ GN    + S+ +   R GK  +K+   + +  V     D   ++     + + F +
Sbjct: 655 ATASGNVRRNKLSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPV 714

Query: 676 DQIPE-MSR-GKGVRLQSYKDGGISDVICFKI---------------------------- 705
           + +     R   GVR  +   G    VI   I                            
Sbjct: 715 EDVRVFKGRDSTGVRGINL--GKDDKVISMAILNAFDASPEERAGYLKMRRAVIGDSGEE 772

Query: 706 ----------------CEGLTWIDSAG--------RSYNRSENDLLGWLGKRGGVGSLVP 741
                            E  T + +A         R + +  +        RGG G    
Sbjct: 773 GTENGEAEEASAAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAM 832

Query: 742 KGFPRSGKFLSS 753
           +   R+G  ++S
Sbjct: 833 RVNARNGNLVAS 844



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 62/229 (27%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G +R  K             A+    GD +           +LL +  G+   
Sbjct: 652 VMFATASGNVRRNKLSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIR 711

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------------------------ 610
            P  ++   +G        I+L  +  +++  + ++                        
Sbjct: 712 FPVEDVRVFKGRDSTGVRGINLGKDDKVISMAILNAFDASPEERAGYLKMRRAVIGDSGE 771

Query: 611 ---------------------------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         +L +S +G        E   + R GK    
Sbjct: 772 EGTENGEAEEASAAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITA 831

Query: 644 VSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
           +    +   +     V   D + +V    +L+   +D I  + R  +GV
Sbjct: 832 MRVNARNGNLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGV 880


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/753 (34%), Positives = 415/753 (55%), Gaps = 27/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K  S+   +E  +L Y++S I  RA+PD+RDGFKPVHRR + A  E G+     +KKSA
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +L+ +D++ VDF   Y+  + EP V PS FPNLL NGT+GIAVGMAT+IP HN+
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A  A   N  ++I +++EY+ GPDFPTG   +     I++ +  GRG   +R+++
Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAE-IYGDSGIIKYFNTGRGSVTIRSKY 263

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++G+G   IVVTEIPY V K+ LIEKI EL+  K+I  + D+RDES+ D   ++   
Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R + P++L+  +F  + ++T F +N   L  G VP V+ +  ++K +  H+ E+L RR+
Sbjct: 324 KRDVIPEVLLNKLFKTTPLQTNFSVNNLALVNG-VPMVLNIKEMIKYYFEHQIEILVRRT 382

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
           +F ++    R+ I++GL+IA  NIDE+I II+   ++D     ++ RF LTE Q  AIL 
Sbjct: 383 NFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQRFDLTELQTKAILE 442

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RLR+L  L   ++K E ++L+   + ++ +LN+  +Q N I   +  + E F       
Sbjct: 443 MRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYNRQVNIICENLDYLIEKFGDE---- 498

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
            RRT    +         + +I  E I V +S RG+         ++ +   V +  L  
Sbjct: 499 -RRTEI--MYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLKT 555

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++  L A+T   +L  S  G+ Y L    +   S +  G      + +  ++ I+
Sbjct: 556 YEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESIL 615

Query: 604 TAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
           T    D+  +  L   +SKG       S+  +    GK  + +   +K+  V++  G D 
Sbjct: 616 TILPIDNYDQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKDGDKLFSVMQTLGNDE 675

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +   N  ++ F+ +   EM R   GV+  + ++             G   +    +  
Sbjct: 676 VFIGASNGNVIRFNENDAREMGRIATGVKGINLENDEYVVGTGLS-SHGEYVLAVGSKGL 734

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +     L KRG  G    K   ++G  +S
Sbjct: 735 GKLTDINDYRLTKRGAKGVNTLKVNDKTGNLVS 767



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            E S +    L       +      +++G I+                A+  K+GD L  
Sbjct: 608 IEKSESILTILPIDNY-DQGSLFFTTSKGIIKRANLSDFESIRANGKIAITLKDGDKLFS 666

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +     D + + +++G        +          ++  I+L +++ +V   +      
Sbjct: 667 VMQTLGNDEVFIGASNGNVIRFNENDAREMGRIATGVKG-INLENDEYVVGTGLSSHGEY 725

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L V SKG   + + ++     R  K    +   +K   +V +      +   ++  + K
Sbjct: 726 VLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDKTGNLVSIKVVNREEEALIITTSGK 785

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++  SI  I  + R   GV+L S ++      I     E +
Sbjct: 786 VIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEI 826


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/752 (35%), Positives = 445/752 (59%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT   I+ SR  I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V++ +P+QV  +R++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E 
Sbjct: 357 FRRDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFGISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E  +L  E++++  +L S ++    +  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQLQGILASERKMNTLLKKEIQADADAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D  AL +K
Sbjct: 477 GD-----DRRSPLHEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   +    T   ++ + + G++Y L   +L S RG GE +   + L     +    
Sbjct: 531 AGDNWLSSAKGKTNQPVVFIDSTGRSYALDPVSLPSARGQGEPLTGKLTLPPGAVVEHML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--V 664
           +     KLL+ S  G  F+   ++++A  R GK  + +     +   +++  D   +  +
Sbjct: 591 MTGEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S       K       +     +    +    R 
Sbjct: 651 TAAGRMLMFPVADLPQLSKGKGNKIISIPSADAAKGDDKLAYLTILPPQSTVTLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L    G+RG  G+ + +G  R    
Sbjct: 711 IKLRPEELQKVHGERGRRGT-LMRGLQRIDSV 741


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 402/757 (53%), Gaps = 29/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K V++   +   YL Y++S I  RA+PD+RDG KPVHRRI++AM +MGL     ++K 
Sbjct: 5   NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VGEV+   HPHGD SVY++LVR+AQP+  RYPL+ GQGNFG+ D D  AA RYTEA+
Sbjct: 65  AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A+ +L+ +D+D VDF   Y+ +  EPVVFP++ PNLL NGT+GIAVGMAT+IP HN
Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC+  + LI+NPE + E L   + GPDFPTGG+ ++ RE I  +Y  GRG   +RAR
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGL-IQGREGIRNTYANGRGRIVIRAR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  RG   I+ TE+PYQV K+ L++KIAEL   KRI  + ++RDES      ++  
Sbjct: 244 THIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P  ++ S+F  + M++ F  NM  L   + PQ + L   L+ ++ HR +V+ RR
Sbjct: 304 LKRDANPRSILNSLFKYTAMQSSFNTNMLALVDSQ-PQTLTLKKFLQHYITHREQVITRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRFSLTENQVDAI 431
           + F ++  + R  IL+GL IA  N+DE+I IIR   +        +   F  +  Q  A+
Sbjct: 363 TQFELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFGFSNEQARAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL SL  L+  +++ EL ++L   +    LL+   +    I  +++E+KE F  +  
Sbjct: 423 LDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDINEIRGIIMADLKELKEKFGDA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E    D     + +I  E + V ++ +G+I+          +     ++ +
Sbjct: 481 ---RRTEIEEGEVRDFKD--EDLIPNEEVVVTLTEKGYIKRLPSGTYRAQRRGGRGVTGM 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +E D+++  L  HT D +L  +  G+ + L    L   S    GE +  LI +   + 
Sbjct: 536 ATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTARGEHLINLISIEQRER 595

Query: 602 IVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +              L+V + KG       S+     R G   + +  ++++     V  
Sbjct: 596 VTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDELIGAKLVGP 655

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  V ++  +   + F +DQ+   SR   GVR     D     V    +  G   +    
Sbjct: 656 EADVLLITLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTV-VSLNAVIPGGELLVVTE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +           RGG G L  K   ++GK  S+
Sbjct: 715 HGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASA 751



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A +           VV + +G ++              L A++ ++ D L
Sbjct: 588 ISIEQRERVTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDEL 647

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A        +LL++  G A       L S       ++  I L  +  +V+       
Sbjct: 648 IGAKLVGPEADVLLITLHGHAIRFGVDQLRSASRTSGGVRG-IRLTDDDTVVSLNAVIPG 706

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGE 666
            +LLVV+  G        E     R G   L     EK   V          + + ++  
Sbjct: 707 GELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMVTEEDNDLMLISA 766

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           +  ++   +  + +  R   GV L +  +     V+   +  G
Sbjct: 767 SGVVIRTDVSLVRQAGRATQGVTLMNLAED--DKVVAVAVANG 807


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/786 (30%), Positives = 396/786 (50%), Gaps = 64/786 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+
Sbjct: 5   QERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R+PLI+G GNFG+ID D  AA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 134 ARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           +R+  +    +LQ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT+IP
Sbjct: 125 SRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNP ++  +L+EYI GPDFPTG  I+ SR  I E+Y  GRG   +
Sbjct: 185 PHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSR-GIREAYATGRGSVTM 243

Query: 253 RARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           R    +E            I++TE+PYQ  K+ LIEKIA+++   R+  + D+RDES  D
Sbjct: 244 RGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRD 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P +++ +++  + ++  F +NM  L     PQ++ L   L+ +L  R
Sbjct: 304 GMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSE-PQLLSLLDFLQVFLDFR 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            E + RR+ + ++    R  +L+G LIA  N+D +IA+IR        K  ++  +  + 
Sbjct: 363 IETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIESYGFSA 422

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL ++LR L  LE  +I+ E + L  +   ++ +L +  +    I  E+ +++  
Sbjct: 423 TQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDILANRDRILAIIKEEVIQIRNA 482

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++        R T  +    D + +   +I  E + ++++ +G+I+             +
Sbjct: 483 YA------NERRTLIKADENDLSDIS--LIANEQVAILVTEQGYIKRMLVDTFEAQNRAT 534

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              S    K+ D ++  +   + D +L  S  G AY+L A  +   S    G  +  ++ 
Sbjct: 535 RGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESSRTAKGYPLVQMLP 594

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +   + + +      +     L++++  G       S        G   + +   ++++ 
Sbjct: 595 IPKEEKVTSVIGVSEFSEDDYLVMLTQGGFIKKTALSAFNRIRTNGLIAISLEDGDELRW 654

Query: 653 VVKVTGDHVAVVGENRKL-LIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI--- 705
           V   T D   ++G  R + + F  D  Q+  + R  KGV+  S ++G    +I   I   
Sbjct: 655 VRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKSMSLREG--DQLISMDILPS 712

Query: 706 -----------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                   +G   +  +     +        L  R G+G +  K
Sbjct: 713 QVVEEVEGAIDDSDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMK 772

Query: 743 GFPRSG 748
            F + G
Sbjct: 773 -FRKDG 777



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 79/242 (32%), Gaps = 39/242 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
                   + +  +   ++   V+++  G+I+        +  +  L A+  ++GD L+ 
Sbjct: 595 IPKEEKVTSVIGVSEFSEDDYLVMLTQGGFIKKTALSAFNRIRTNGLIAISLEDGDELRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL----------------- 596
              A   D +L+ S  G      A +    R  G   + +  +                 
Sbjct: 655 VRMATADDSVLIGSQRGMTIHFKA-DHAQLRPLGRPTKGVKSMSLREGDQLISMDILPSQ 713

Query: 597 ----------NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
                     + ++D       D    +LVVSS G    V  S      R G   + +  
Sbjct: 714 VVEEVEGAIDDSDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKF 773

Query: 646 --SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
               +++  +      D + +V +   ++  S+D I   SR   GV+LQ          +
Sbjct: 774 RKDGDELVALRIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAV 833

Query: 702 CF 703
             
Sbjct: 834 AL 835


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/752 (35%), Positives = 446/752 (59%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L ++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ LI+ P  ++++LL+ + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKED-----GEVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  I+ EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR ++R+  + RR+ IL+GLL+A+LNIDE+I IIR ED+PK V++SRF ++E 
Sbjct: 357 YRRDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAVLMSRFEISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E++   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELQADSQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRRSPLREREE-AKALSETDLVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+   A    +   +  + + G++YTL   +L S RG GE +   + L     +    
Sbjct: 531 AGDNYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTLPPGAVMEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVV 664
           +     KLL+ S  G  FI   +++++  R GK  L +    K+   + V    D +  +
Sbjct: 591 MEPDEQKLLMASDAGYGFICTFADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICE--GLTWIDSAGRS 718
            +  ++L+F + ++P+MS+GKG ++ S        G   ++   I        +    R 
Sbjct: 651 TQAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGSDKLVWLLILPTGSAITLHVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +L  +   RG  G+L+P+G  R  + 
Sbjct: 711 LVLRSEELQKFRADRGRRGTLLPRGLQRIDRV 742


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/763 (31%), Positives = 408/763 (53%), Gaps = 37/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EP V P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA I+N EI I++L+++I  PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGI-IYGYDGVRDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEEV +G  CI+VTEIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KAIVEEV-KGRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  G  P+ + L  ++  ++ HR EV+ R
Sbjct: 303 ILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKG-RPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  IL+GL+IA  NIDE+IA IR   N D+ +  ++ RF LTE Q  AI
Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVRFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  ++++ I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEPRRYDIIKEELAHIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSAL 543
            G  R +  E +  D     + MI    + V ISN G+         +            
Sbjct: 477 -GDERRSIIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G     G A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              TGD  V +   + K + F   +   M R   GVR  +   ++  +  ++     E  
Sbjct: 654 KLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMES- 712

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + + +        +  RGG G        ++G  ++
Sbjct: 713 NILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVA 755



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 19/245 (7%)

Query: 493 GRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV------D 539
           GR       +   DK     + Q + ++E I     ++ + +G ++              
Sbjct: 579 GRAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG 638

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNH 598
           ++A+  KEGD L  A       +++L    GK+           GR       + +   +
Sbjct: 639 INAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPMGRTASGVRGITLQHEN 698

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           ++ I    V D    +LVVS KG     +  +     R GK    ++  EK   +V +  
Sbjct: 699 DEVIGMVAVNDMESNILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVAIKN 758

Query: 657 --TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
               + + ++ ++   +  +++ +  M R   GVRL + KD      +     E     D
Sbjct: 759 VDDSNDLMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEED 818

Query: 714 SAGRS 718
             G +
Sbjct: 819 LEGET 823


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/757 (35%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EPV  P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV E+  A + LIDNP+  + +L+E++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIERIYD 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R RA +  E+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIRARAVYSEEQ-----GEIVITSLPHQASSGKILEQIANQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGLKQLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  +  R+ IL+ L++A+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++IK E D L AE++K++ LL+S ++    +  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKIKGEQDELAAERDKLELLLSSERRLKTLVKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  +Q +   E +TVV+S++GW+R  K H VD+  
Sbjct: 476 GETYGD-----NRRSPIIERVD-AKALTEQELTPTESVTVVLSDKGWVRCAKGHDVDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   ++   +    + + + G+A+   +  L S R  GE I    ++     +
Sbjct: 530 LSYKSGDSYLCSVMGKSNQAAVFIDSTGRAFATDSHTLPSARSQGEPITTRFNMAPGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD 659
               + +     L+ +  G  FI    ++++  + GK  L + +     + KL+ K    
Sbjct: 590 QHVLMGEDEQFFLLATDAGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTADQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID-- 713
            +  +    ++L+FS+D +P++S+GKG ++         +    ++   +    T +   
Sbjct: 650 SLLAITSEGRMLMFSLDALPQLSKGKGNKIIGIPTDRAKNREELLLHLNVVPHNTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/757 (32%), Positives = 390/757 (51%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 9   KVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD++VRLAQ F  RY ++ G GNFG+IDGDS AA RYTE R
Sbjct: 69  ARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYTEVR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++AE +L+ +++D VDF   Y+E   EP V PSK P LL NG++GIAVGMAT+IP HN
Sbjct: 129 MAKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    + LIDNP++ I +L+  I GPDFPTG   +  +E I  +Y  GRG  ++RA+
Sbjct: 189 LCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGA-CILGKEGITSAYNTGRGVVKIRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314
             +    +G   IV+TEIPYQV K+ LI+ IA L     I  +  + D S+ +D   ++ 
Sbjct: 248 AEIVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMKIVV 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  PD+++  ++  + +++ F + M  L  G+ P+V+ L  +L+ +L H+++V+ R
Sbjct: 308 ELKSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQ-PRVLNLKQVLEYYLEHQKDVITR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ + +     R  IL+GL IA  NID +I+ IR        +  ++  F L++ Q  AI
Sbjct: 367 RTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMENFKLSQRQAQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +I  E  +LL   + ++S+L    +  N I  +++E+K+ F     
Sbjct: 427 LDMRLQRLTGLERKKIDEEYVDLLETIDWLESVLADEHKVMNIIKEDLQEMKKRFGDE-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE---- 547
              RRT   E+S        + +I +E I V IS++G+I+     +              
Sbjct: 485 ---RRT---EISIDSSEMDIEDLIAEEDIVVTISHQGYIKRQTLDNFRSQKRGGVGKTGG 538

Query: 548 -----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
                 DS +    + T   IL  +  G+ Y      +   S    G AI  L+ L   +
Sbjct: 539 SGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIPEASRTAKGTAIINLLALMPGE 598

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I        +     + + ++KG    +   ++ +  + G   + +  +E +  V    
Sbjct: 599 KITAVIPVKEFREEQYMFMATNKGTVKKINLKDLESVRKNGMIAINLDDDEDLIGVELTD 658

Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G+  + +   N   + F    +  M R   GV+  S   G     +     E    + + 
Sbjct: 659 GNSEIILATRNGIAIRFDEQDVRTMGRTAHGVKGISLNYGDEVVAMDSVSDEDSEVLTAT 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +           RGG G +  K   ++G  + 
Sbjct: 719 EFGMGKRTEVKEYRKQTRGGKGIINMKITEKTGLVIG 755



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 70/206 (33%), Gaps = 11/206 (5%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++Q+  +A     VK+I  K  +  R+          D+  +   + +     ++ +  
Sbjct: 610 REEQYMFMATNKGTVKKINLKDLESVRKNGMIAINLDDDEDLIGVELTDGNSEIILATRN 669

Query: 528 GW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAG 578
           G         +R++   +  +  +    GD +         D  +L  +  G        
Sbjct: 670 GIAIRFDEQDVRTMGRTAHGVKGISLNYGDEVVAMDSVSDEDSEVLTATEFGMGKRTEVK 729

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK- 637
                   G+ I  +        ++   V +   +++++++ G     +  +I    R  
Sbjct: 730 EYRKQTRGGKGIINMKITEKTGLVIGMKVINPDQEIMMITAAGLIIRTDVDQISQYGRNT 789

Query: 638 -GKTFLKVSSEEKMKLVVKVTGDHVA 662
            G   + ++ ++K+  +  +  +  A
Sbjct: 790 QGVKLMTLNDDDKVVSLAAIHHEEDA 815


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/760 (31%), Positives = 393/760 (51%), Gaps = 31/760 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +   ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM  + L  G   +
Sbjct: 6   NELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+Q +Y +LVR+AQP++ RY L+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  ++  +D++ VD    Y+E  SEP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A   ++DNP  SI+++++ +  PDFPTGGII   R  + E+Y  GRG   +R
Sbjct: 186 HNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYR-GVKEAYHTGRGKIILR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
               +EE  +    +V+ +IPY V KSRLIE+IAEL   K +  + D+RDES +    ++
Sbjct: 245 GVVNIEE-KKDREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   PD+++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+ 
Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLAL-DKGLPRTMNIKQLIGSWVDHRIEVVR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +Q  + R+ IL+G L A  N+DE++ IIR     ++ K  ++  F  +  Q +A
Sbjct: 363 RRTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEHFEFSIKQANA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+LRL  L  LE  +I+SE D LL + E   ++L S +   + I  E+ E++       
Sbjct: 423 VLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVLASEQMVRDIIKEELDEIQVK----- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------- 542
               +     ++  A+     + +I  EP  + IS   +I+ +   +             
Sbjct: 478 ---HKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRMPVDTFREQRRGGTGVVG 534

Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNH 598
               KE D LK    A+T D +L+ +  G+ Y L    +   S R  G+ +  L+ D+  
Sbjct: 535 FNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGSRRSKGKPLVNLLSDIRS 594

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I T      ++    +L+ +  G              R G   + +   ++++    
Sbjct: 595 EESIATVLQTSNFEGDRYVLMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEGARL 654

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
           V G+  V +   N   + F   ++  M R  +GV+  S K      V C  +    T + 
Sbjct: 655 VEGEQQVMLFTHNGMAVRFDHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNETVLI 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +           RGGVG        R+GK + +
Sbjct: 715 VCENGFGKRSTVSDFRQTNRGGVGVRSIITSERNGKVVGA 754



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 11/213 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                +    LQ +  E +   ++ +  G ++     +        + A+   EGD L+ 
Sbjct: 592 IRSEESIATVLQTSNFEGDRYVLMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEG 651

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A       +++L + +G A       + S       ++ +     N  +V   V      
Sbjct: 652 ARLVEGEQQVMLFTHNGMAVRFDHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNET 711

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDH-VAVVGENRK 669
           +L+V   G       S+     R G   ++ +      K+   V +T D  + ++  + +
Sbjct: 712 VLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERNGKVVGAVCITDDDGLLMMSSSGQ 771

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            L  S+  +  M R  +GV+L + ++  I   I
Sbjct: 772 TLRISMKDLRVMGRNTQGVKLANLREDDILVAI 804


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 439/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHE-SRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L +    K      +      
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/762 (34%), Positives = 403/762 (52%), Gaps = 40/762 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V +   L++ YL Y++S I  RA+PD+RDG KP  RRII+AM E+ L  G+ F+K 
Sbjct: 6   NIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHFRKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+Q VY +LVRLAQP++ RYPLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 66  AKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++   +L  +++D V+FR  Y+E   EP VFP++FPNLL NG+SGIAVGMAT++P HN
Sbjct: 126 LQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A +ALIDNP++    LLEYI GPDFPTGG I+   E I E +  GRG   +R  
Sbjct: 186 IGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFIL-GTEGIREYFETGRGKIIMRGE 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++  IPYQ+  S+LIE++ EL+  K+I  + DIRDES  D   ++  
Sbjct: 245 TEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIVIQ 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+ D  ++   ++  + +++ F +    L  G VPQV+ +  +L+ ++  R EV+ RR
Sbjct: 305 VKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDG-VPQVVNMKEMLQNFIDFRHEVVLRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           + F ++    R+ IL+GL IA  N+DE+IA+IR    P         +F L+E Q  AIL
Sbjct: 364 TQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFGLSEIQAKAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I++E   LL    ++  L+   + + N I  E  E+++ F+     
Sbjct: 424 DMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEIRDKFAD---- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALH 544
             +R T   +     +   + +I  E + V I++ G+++ L              LSA +
Sbjct: 480 --KRLTTI-IPAPAGSFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQARGGKGLSASN 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++    A T   ILL +  G  Y L    +   S    G+AI  L+ L     I
Sbjct: 537 LKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVNLVKLAEGDRI 596

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
              VT   +     +++ +  G       +        G   +K+   +++        G
Sbjct: 597 KAFVTLKDFHPEQNIVMCTRNGLVKKTPLTAFSHPRSIGIKAIKLREGDELIDARICEAG 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC----------- 706
           D + +   + K   FS  +I  M R  +GV+    ++G    VI   I            
Sbjct: 657 DDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDY--VISMTIATAQDQLENGKP 714

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              T +  + + Y +        + +RG +G +  K   R+G
Sbjct: 715 NSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNG 756



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 23/230 (10%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLK 552
             E  R       +    ++ I V+ +  G ++           S+ + A+  +EGD L 
Sbjct: 590 LAEGDRIKAFVTLKDFHPEQNI-VMCTRNGLVKKTPLTAFSHPRSIGIKAIKLREGDELI 648

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A      D ILL + DGK        + S R   + ++  I L +   +++  +  +  
Sbjct: 649 DARICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKG-IRLRNGDYVISMTIATAQD 707

Query: 613 KL----------LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTG 658
           +L          L +S KG       S      R     + + + E+      L++    
Sbjct: 708 QLENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLVRDD 767

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           D + ++ +   ++   + +I  + R   GVRL +     +   I     E
Sbjct: 768 DDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLVHSE 817


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 411/764 (53%), Gaps = 36/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  
Sbjct: 1   MEERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+I
Sbjct: 121 TEARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ +A LA+  NP+ISI +L+E YI GPDFPTGG I+  + +I ++Y  G G  
Sbjct: 181 PPHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYIL-GKSAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE G     I+VTE+PY V K+R+IEK+++L+  K+I  + +IRDES  D  
Sbjct: 240 VMRAKTEIEEKGNKK-VIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGI 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R + P++++  ++ L+ ++T F  N   L     P+ + L  ++  +L H+ E
Sbjct: 299 RVVIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNE-PKTLNLKEMISLYLEHQEE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR+   + R  IL+GL  A   ID II +IR+    D  +  ++  F++++ Q
Sbjct: 358 VIRRRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEEFNMSDKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ + 
Sbjct: 418 AKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+ +       + +I  E + + ++N G+I+                
Sbjct: 478 DK-----RRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYIKRMPVDTYKSQNRGGRG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +     D +   ++  T D +L  +  GK Y L   N+        G  +  L+DL+
Sbjct: 530 IKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLDLD 589

Query: 598 HNQDIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + I +    D       S   L  V+  G    V  +E     + GK  + +   +++
Sbjct: 590 KEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQL 649

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V   +G D + +   N KL+ F    +  M R   GV+  +     +  +      EG
Sbjct: 650 VQVKLTSGNDQILIAASNGKLVRFEESNVRPMGRISSGVKGINVDGSEVVGMT--TDKEG 707

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    R Y +        L  RGG G        R+GK ++
Sbjct: 708 KYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVA 751



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 15/205 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
           +        +Q           ++  G ++ +  +           A+  K+ D L    
Sbjct: 594 IKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQLVQVK 653

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCKL 614
                D+IL+ +++GK       N+   R  G     +  +N    ++V          +
Sbjct: 654 LTSGNDQILIAASNGKLVRFEESNV---RPMGRISSGVKGINVDGSEVVGMTTDKEGKYI 710

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENRKL 670
           LVV+ +G   +    E   + R GK    +       K+  +  V GD  + ++ ++  +
Sbjct: 711 LVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVALRAVNGDEDLLIITDDGIM 770

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKD 694
           +   ++Q+    R   GVRL    +
Sbjct: 771 IRLPMEQVTTAGRATQGVRLIKVNE 795


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/769 (30%), Positives = 415/769 (53%), Gaps = 42/769 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M ++G+     +KK
Sbjct: 5   EKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RYPL+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++AE +L  ++++ VDF   +++   EP V PSK PNLL NG SGIAVGMAT++  H
Sbjct: 125 RLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  +DN +I  E+LL+++  PDFPTGGI +   +   ++   GRG   +RA
Sbjct: 185 NLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGI-IYGVDGARDALLTGRGRIVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE G G   I+VTEIPYQV K+ +I+K A+L+  K+I  + DIRDES  +   +++
Sbjct: 244 KAEIEESG-GREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  ++  + +++ F +N   L  G  P+++ L  ++ E++  R EV+ R
Sbjct: 303 ELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDG-RPRLLNLREMITEFVKFRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IAIIR+    ++ +  ++ RF+L++ Q  AI
Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMERFALSDLQSRAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E  +L+A    +  +L   +++   I  E+ +++  +  +  
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQIIKDELIDIRTKYGDA-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
               R +  E S ++     + +I  E + + IS+ G+I+              +     
Sbjct: 480 ----RRSRIEYSASEMKI--EDLIPDEEVVITISHAGYIKRTNLDEFKVQSRGGMGSKGS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    A   + +L+ +  G+ + +    +  G     G AIQ L+++  +  
Sbjct: 534 TTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKGRAIQNLLNIEQDDK 593

Query: 602 IVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I                   +++ + +G                G   + +   +++   
Sbjct: 594 IKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPRANGINAITIRENDELLEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LT 710
               G + + +  +  + + F+  ++  M R   GVR  + ++     V    + +   T
Sbjct: 654 RLTDGTNEMVLATKAGRAIRFNEAKVRPMGRNASGVRAVTLQNDTDEVVGMICVKDNTET 713

Query: 711 WIDSAGRSYNRSE--NDLL-----GWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +    ND         +  RGG G        ++G  L+
Sbjct: 714 IMVVSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINITDKTGPLLA 762



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 19/204 (9%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            L      +    V+ +  G I+     +        ++A+  +E D L  A     T+ 
Sbjct: 602 DLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPRANGINAITIRENDELLEARLTDGTNE 661

Query: 563 ILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L +  G+A       +   GR       + +  + ++ +    V D+T  ++VVS KG
Sbjct: 662 MVLATKAGRAIRFNEAKVRPMGRNASGVRAVTLQNDTDEVVGMICVKDNTETIMVVSEKG 721

Query: 622 NAFIVEESE-------IIANTRKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKL 670
                  ++            R GK    + ++ +    L +K     D + ++ +    
Sbjct: 722 YGKRSFLNDPEDGEPVYRITNRGGKGVKTINITDKTGPLLAIKTVADEDDLMIITKAGVT 781

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYK 693
           +   ID I  M R   GVRL + K
Sbjct: 782 IRMHIDGIRVMGRAAQGVRLINLK 805


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/778 (32%), Positives = 405/778 (52%), Gaps = 45/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N    E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+RIVG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+LL    E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    + ++    R     +++ +++  + ++  FP NM  L  G VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W+AH+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++  
Sbjct: 372 WVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+ E +        RRT        D     + +I +E + V I+  G+         RS
Sbjct: 492 EIVEKYGDE-----RRTRIV---PFDGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                  +     +E D +       T   +L  +  G+ Y      L  G     G+ +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG-- 696
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              DV+     +   ++ + G  Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEG-GYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRI 563
            ++    V+ + RG ++  +    + +      A++ ++      D L  A    T   +
Sbjct: 624 YDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDL 683

Query: 564 LLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVV 617
           LL+S  G++    A +     +GR    +    +    +  ++   V D       L VV
Sbjct: 684 LLVSRAGQSLRFHADDDTLRPTGRA--TSGVTGMRFREDDYLLAMDVVDPSWQDADLFVV 741

Query: 618 SSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G A      +     R G   K    V +   +   +    GD V  +  + K++  
Sbjct: 742 TEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRS 801

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++ ++    R   GV       G     + 
Sbjct: 802 AVVEVSRTGRTTQGVTFAKPDAGDRIIAVA 831


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/858 (30%), Positives = 411/858 (47%), Gaps = 120/858 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D+++         ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 9   GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EM L +   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 69  NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  
Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R R  +E +      I++TEI YQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L
Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDML 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-- 419
           + ++A R EV+ RR+ F +     R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426

Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L  L   ++  EL+
Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  E      +L S  +  N +  E+  V++ F+       RRT   E+         +
Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+I+          +      S +  KE D +     A+T   +L
Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G+A+  ++ L   + I T               ++ 
Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMF 658

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F 
Sbjct: 659 STTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFP 718

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  +G    VI   I                           
Sbjct: 719 VTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGA 776

Query: 706 --CEGLTWI--------------------------DSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  +                            +   Y +  +     +  RGG G
Sbjct: 777 DDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKG 836

Query: 738 SLVPKGFPRS---GKFLS 752
                   ++   GK ++
Sbjct: 837 IRAT-DTSKTDEIGKLVA 853



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 728 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 782

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 783 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 841

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 842 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 899

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 900 KVVSVERISDADSDEENGNG 919


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/857 (29%), Positives = 410/857 (47%), Gaps = 115/857 (13%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D+    +      +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ 
Sbjct: 1   MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M+E G      + KSARIVG+V+GK HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG
Sbjct: 61  SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  AA RYTE+R+ + A  +L+ +DE  VDF+  Y+ ++SEP V P++FPNLL NG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +AA+ALID P++++ +L+E + GPDFPT   I+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATIL-GRGGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +RA+  +E + +    I+ TEIPYQV K+ LIE+IAEL+  KR+  + 
Sbjct: 240 RNAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   ++    R    D+++  ++  + +++ F +NM  L+ G  P++M L  
Sbjct: 300 DLRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALN-GGRPELMTLHD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
           +L+ ++  R  V+ RR+ FR+        +  GL IA  NIDE+I +IRN          
Sbjct: 359 VLRAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREA 418

Query: 413 ----------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                  K        L+E Q  AIL+LRL+ L  L   +I   
Sbjct: 419 LMARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEA 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L AE  +   +L S ++ +  I  E+  VKE ++       RRT   +         
Sbjct: 479 LNKLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATP-----RRTQITDAEG---DVE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S+ G+I+          +      S +  KE D +     A+T   
Sbjct: 531 DEDLIAREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ GKAY      L   + +  G+A+  ++ L   + I T               +
Sbjct: 591 VLFFSSRGKAYKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDV 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIF 673
           +  ++ G     + S+ +   R G   +K+   E +  V      D + +   + + + F
Sbjct: 651 IFATTGGTVRRNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRF 710

Query: 674 SIDQIPE-MSRG----KGV-----------------------------RLQSYKDGGISD 699
           ++ ++     R     +GV                             R  + +     D
Sbjct: 711 AVPEVRVFQGRTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGED 770

Query: 700 V-----------------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           V                          ++ E +  +  +   Y +  +        RGG 
Sbjct: 771 VSPDAGAEAEEAATGAVELTDERFAAMQVAEQI-ILTVSENGYGKRTSSYEYRTTGRGGK 829

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+GK ++S
Sbjct: 830 GIVAMAVNARNGKLVAS 846



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 82/293 (27%), Gaps = 88/293 (30%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + +             +  +  G +R  K           L A
Sbjct: 625 PLESGERITTIMPLPEDESSWATLD-------VIFATTGGTVRRNKLSDFVDVRRNGLIA 677

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGR----------GHGEAI 590
           +   +G+++     A   D ILL ++DG+   + +P   +  GR          G G+ +
Sbjct: 678 MKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQGRTSMGVRGVSLGQGDRV 737

Query: 591 QLLIDLNH---------------------------------------------NQDIVTA 605
             L  LNH                                             ++     
Sbjct: 738 ISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAEEAATGAVELTDERFAAM 797

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHV 661
            V  +   +L VS  G        E     R GK  + ++   +   +     V  GD +
Sbjct: 798 QV--AEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARNGKLVASFPVGQGDEI 855

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +V    +L+   +D I    R                VI F   E    +  
Sbjct: 856 MLVTNGGQLIRCPVDGIRIAGRST------------QGVIVFNTAEDERVVSV 896


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/748 (35%), Positives = 442/748 (59%), Gaps = 23/748 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE +L  +    V +   ++   +EP   P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++NP+  +  L+++I  PD+PT   I+ S+E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W +++        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SIRLRAVWEIDD-----GHAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWLL 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RRE +  R + R++ + +R+ IL GLLIAYLNIDE+I IIRNED+PK V+V+RF+L+E 
Sbjct: 357 FRRETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAVLVARFALSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q ++IL L+LR L KLEE++++ E D+L  E++++ ++L S ++    I  EI    + +
Sbjct: 417 QAESILELKLRHLAKLEEFKLRGEQDDLAKERDQLQAILGSERRLNTLIKKEIETDAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+++S  GW+RS K H +D + L++K
Sbjct: 477 GD-----DRRSPLKERIE-AKAMNEHDILPSEPVTIILSVMGWVRSAKGHDIDPTNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD    A    T   ++ L + G++Y+L   +L S RG GE +   + L     I    
Sbjct: 531 AGDGFCSAARGKTNQPVVFLDSTGRSYSLDPLDLPSARGQGEPLTGKLALPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
                 K L+ S  G  FI   S+++A  + GK  + + S  K+   ++V  +    +  
Sbjct: 591 TAAEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWIDSAGR 717
           + +  ++LIF + ++P++S+GKG ++ +    +     D++    F   +    +    R
Sbjct: 651 ITKAGRMLIFPVSELPQLSKGKGNKIINISAAQSASRDDLLVWLMFLQPQSSITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +  DL  +  +RG  GS +P+G  
Sbjct: 711 KLKLNPEDLQKYRAERGRKGSSLPRGLQ 738


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/857 (31%), Positives = 425/857 (49%), Gaps = 121/857 (14%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++ N L E +    ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  D EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALID+P I+++K++E I GPDFPTGGII+     I  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIIL-GHSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+  G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    + +  ++++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + +  E+  ++E F+       RRT F   S        +
Sbjct: 479 KIGVDIADYLHILASRSRIMSIVKDELNVLREAFATP-----RRTIFGFGSA---EMDCE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +      +T   +L
Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSTRGIVYKEKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ +   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYKDGGISDVICFKI---------------------------- 705
            ++     R   GVR  +  +G    VI   +                            
Sbjct: 711 VEVRIFAGRNSVGVRGINLTNG--DKVISMTLLEHVEATSVERSAYIKRVIHERRAAGAD 768

Query: 706 CEGLTWIDS---------------------------AGRSYNRSENDLLGWLGKRGGVGS 738
            E +  +D                            +   Y +  +     +  RGG G 
Sbjct: 769 AEDILVLDENDVGTETELTDERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGI 828

Query: 739 LV--PKGFPRSGKFLSS 753
               P      GK +++
Sbjct: 829 RATDPSKTAEIGKLVAA 845



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 82/307 (26%), Gaps = 75/307 (24%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
                 GR       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQV 668

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                 A+   E D +         D ++L + +G+    P   +    G        I+
Sbjct: 669 NRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRNSVGVRGIN 728

Query: 596 LNHNQDIVTA----------------------------------FVYDS----------- 610
           L +   +++                                    V D            
Sbjct: 729 LTNGDKVISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDVGTETELTD 788

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV 656
                       LL +S  G        E   + R GK              K+     V
Sbjct: 789 ERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPV 848

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG---GISDVICFKICEGLTW 711
              D + +V +  +L+   +D I    R  KGV++ +  +G      + I     +    
Sbjct: 849 KAQDQIMLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISESEDDVSQL 908

Query: 712 IDSAGRS 718
            D AG+ 
Sbjct: 909 DDEAGKH 915


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/753 (36%), Positives = 438/753 (58%), Gaps = 25/753 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E  +   L    EE YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 1   MTTEVTETRPLSRFTEEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  R+PL+ GQGN+G   D  S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIAVGMAT 
Sbjct: 121 YTEARLSKFSEVLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A   L++ P   +E ++E + GPD+PT   I+   E IV+ Y  GRG  
Sbjct: 181 IPPHNAREVANACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA + VE+       IV+T +P+Q   +R++E+IA  + AK++PL+ D+RDES  +  
Sbjct: 241 KMRACYSVED-----GEIVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E ++ +N+N+L +   P+V PL GILKEWL  R
Sbjct: 296 TRLVVVPRSNRVDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +  + RR   R+  +  R+ IL+GLLIAYLNIDE+I IIR EDKPK  ++SRF+LT+ Q 
Sbjct: 356 QTTVTRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKEELMSRFALTDKQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE ++  E D L  E+EK+++LL S ++    I  E+    E +  
Sbjct: 416 EAILELKLRHLAKLEEMKLTGEQDELNKEREKLETLLGSDRRLKTLIKKELLADAENYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E S   KA  ++ +   E +TVV+S +GW+R+ K H ++   L +K G
Sbjct: 476 E-----RRSPIVERSE-AKALSERDLTPAEAVTVVLSKKGWVRTAKGHDIEGDKLSYKSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS   +    +   ++ L + GK+++  A  L S R  GE +     L   +++    + 
Sbjct: 530 DSYLASAEGKSNQPVVFLDSSGKSFSCEAHLLPSARSQGEPLTGRFSLVAGENVEHVLMA 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
                LL+ S  G  F+ + S++++  + GK  + + +  K+     V     D V V+ 
Sbjct: 590 KDESHLLLASDAGYGFVCQFSDLVSRNKNGKAIITLPTGAKILPPNNVNDLQHDKVIVIS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRS 718
              ++L+F +  +P++S+GKG +L S        ++  +  +        +T I +  R 
Sbjct: 650 NEGRMLVFPVADLPQLSKGKGNKLISIPALRAQSREEYVVALATAAPDAAITLI-AGKRK 708

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 DL  + G+RG  G+ +P+G  R    +
Sbjct: 709 LTLKPADLEHYYGERGRRGNKLPRGLQRVDGIV 741


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/756 (35%), Positives = 423/756 (55%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+K   L+  +E  YL Y++S I  RA+PD+RDG KPVHRRII+ M + GL     + KS
Sbjct: 7   NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD ++YD++VRLAQ F  RYPL+ GQGNFG+IDGD AAA RYTE R
Sbjct: 67  ARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++  HN
Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +A IDNP I+IE+L++YI  PDFPTGG  +   E +  +Y  GRG  R+RA 
Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGG-NIMGLEEVKNAYTTGRGKVRLRAE 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  +G + I+VTEIPYQV KS LI+KIA+L+  K+I  + D+RDES      ++  
Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +P++++ +++  + M+T F +    L  G VP+V+ L  ++  +L H+  V+ RR
Sbjct: 305 TKRDANPNIVLNNLYKYTQMQTTFGIINLALVNG-VPKVLTLKQLIDHYLVHQEIVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434
           + F +     R+ I++GLL A  NIDEII IIR   D     ++ RF  +E Q  AIL++
Sbjct: 364 TQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDM 423

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L+ LE+ ++++E D L A  EK+  +LN+       I  E+ E++  ++       
Sbjct: 424 RLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYAD-----D 478

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT      R D       ++E+E + + I+N+G+I+                ++A+  K
Sbjct: 479 RRTKIL---RDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +K      T   +L  +  GK Y+L A  +   S    G  I  LI ++ ++++  
Sbjct: 536 DGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQ 595

Query: 605 AFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GD 659
               D    +   ++ ++ KG       S      + G   +K    +++  V  V   +
Sbjct: 596 VLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNE 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGR 717
            V +V +    L F++DQ+ ++SR   GV+  +       +VI F  + +       +  
Sbjct: 656 EVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKD--DEVISFDLVKDNEFLAVISEN 713

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G    K   ++G    +
Sbjct: 714 GYGKKTELSNYTTQNRGGKGIRTYKIAKKTGDVACA 749



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIR---- 531
           ++  +   +  T  G       ++   +  T   A+    E +   + I+ +G ++    
Sbjct: 564 LKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSL 623

Query: 532 --SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                     + A+ F EGD L         + +++++  G +       L     +   
Sbjct: 624 SLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIG 683

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVS 645
           ++  I LN + ++++  +      L V+S  G     E S      R GK      +   
Sbjct: 684 VKA-ITLNKDDEVISFDLVKDNEFLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAKK 742

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           + +          D + ++ +  +++    + I  +SR   GV L++   G  + V   K
Sbjct: 743 TGDVACAKALKKEDEILLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAK 802


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/765 (30%), Positives = 391/765 (51%), Gaps = 29/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T  +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDDNQTQ-DRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 120 PAAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  
Sbjct: 180 GMTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYES 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 239 GKGNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 299 DQTGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF 
Sbjct: 358 DHQKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++
Sbjct: 418 LDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S    +   + +IEK+ I + +++  +I+           
Sbjct: 478 QKRF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNSYIKRMPIQEFKTQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  
Sbjct: 531 RGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVN 590

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T            L  ++  G       SE       G   L +   ++
Sbjct: 591 LLQLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 650

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+ + +  M R   GVR  + +D     V    +  
Sbjct: 651 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRGINLRDHDYV-VGSGVLDA 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G    
Sbjct: 710 DDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  +  +V + V D+  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRG-INLRDHDYVVGSGVLDADDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       +E     R GK      +   +     ++V   G  + V+  +  +
Sbjct: 714 LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 443/750 (59%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AE++L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++E++L+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPALMSRFGITETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDAYGD- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RR+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 475 ----DRRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKSGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K +    +   ++ + T G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SWKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEG 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  +   
Sbjct: 590 DEQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITAA 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYN 720
            ++L+F +  +P++S+GKG ++ +         D  ++ +        LT I    R   
Sbjct: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGDDTLAQLYVLPPQSTLT-IHVGKRKIK 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +L    G+RG  G+ + +G  R  + 
Sbjct: 709 LRPEELQKVTGERGRRGT-LMRGLQRIDRI 737


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/842 (30%), Positives = 402/842 (47%), Gaps = 114/842 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++M E G      + KS
Sbjct: 17  DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPERKYVKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F  R  L+ GQGNFG+IDGD  AA RYTE+R
Sbjct: 77  ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMRYTESR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L+ +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 137 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ E  +ALID+P ++IE L E I GPDFPTGG I+  R     +Y  GRG   +RA+
Sbjct: 197 LGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQIL-GRAGTRAAYMTGRGSVIMRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+ +    +V TEIPYQV K+ L+EKIAEL+  KRI  + D+RDES  D   ++  
Sbjct: 256 SHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGMRIVVE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +++ ++  R EV+ RR
Sbjct: 316 LKRDAMADVVLNQLYRYTPLQTSFGCNMVALN-GGRPELLNLKDLIQAFIDFREEVVSRR 374

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F ++    R  +L GL IA  NIDE+I +IR    P                      
Sbjct: 375 TKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDIAPLIA 434

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +      + L++ Q  AIL+LRL+ L  L   ++  EL  L  E      +L 
Sbjct: 435 LVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILR 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ EV+  F+       RRT   E+   D     + +I++E + V +S+
Sbjct: 495 SRARILGIVKAELAEVRAEFATP-----RRT---EIQDWDSTVEDEDLIQREDMVVTVSH 546

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G+AY     
Sbjct: 547 AGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVW 606

Query: 579 NLL--SGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
            L   +    G+A+  ++ L+   + I T               ++  ++ G+    + S
Sbjct: 607 RLPLAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRRNKLS 666

Query: 630 EIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE-MSR---- 683
           + +   R GK  +K+   + +  V +    D V +     + + F +  +     R    
Sbjct: 667 DFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTG 726

Query: 684 ------GKGVRLQSY-------------------------------------KDGGISDV 700
                 G G R+ S                                      +  G    
Sbjct: 727 VRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGEAIELPATPEADGEETA 786

Query: 701 ICFKICEGLT---------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               + +             +  + R + +  +     +  RGG G    +   R+G  +
Sbjct: 787 ASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRNGHLV 846

Query: 752 SS 753
           +S
Sbjct: 847 AS 848



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 69/248 (27%), Gaps = 68/248 (27%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G +R  K             A+   EGD +         D +LL +  G+   
Sbjct: 651 VMFATASGHVRRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIR 710

Query: 575 LPAGNL----------------------------------------------LSGRGHGE 588
            P  ++                                                 R  GE
Sbjct: 711 FPVTDVRVFKGRDSTGVRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGE 770

Query: 589 AIQLLIDLNHN-QDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKG 638
           AI+L      + ++   +   D             +L +S +G        E   + R G
Sbjct: 771 AIELPATPEADGEETAASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGG 830

Query: 639 KTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR-LQSY 692
           K      +   +   +      T D + +V    +L+   +D I  + R  +GV    + 
Sbjct: 831 KGIKAMEVNTRNGHLVASFPVETSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTA 890

Query: 693 KDGGISDV 700
           KD  +  V
Sbjct: 891 KDERVVSV 898


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/741 (37%), Positives = 442/741 (59%), Gaps = 22/741 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A +KK
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++ AEL+L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 127 SRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +AA+ L+DNP+ +++ +L  + GPDFPT   I+  +E I + Y  GRG  ++R
Sbjct: 187 HNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRGSVKMR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRI
Sbjct: 247 AVWKKED-----GEIIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVRI 301

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL+ RR  
Sbjct: 302 VLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLSFRRST 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL+GL+IAYLNIDE+I IIRNED+PKPV+++RF L++ Q +AI
Sbjct: 362 VTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPKPVLMARFELSDEQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E D L  E+ +++ +L+S ++    I  EI++  + ++    
Sbjct: 422 LNLRLRHLAKLEEHELQAEKDQLEQERAQLEQILSSERRLNTLIKKEIQQDAKTYASP-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  MI  EP+TV++S  GW+R  K H +D   L++K GD  
Sbjct: 480 ---RRSPIVERAE-AKAISESEMIPAEPVTVILSEMGWVRCAKGHDIDPQGLNYKAGDKY 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  ++   + + + G++Y L   +L S R  GE +   + L     +    + +  
Sbjct: 536 LAHACGKSSQPAVFIDSSGRSYALDPLSLPSARSQGEPLTGKLTLPAGASVDYLLIENEN 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRK 669
            +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      +V      +
Sbjct: 596 QQLLMASDAGYGFICKFEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGR 655

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRSYNRSE 723
           +LIF +  +P +S+GKG ++ +      K+     V    I E  + +  S  R      
Sbjct: 656 MLIFPVKDLPSLSKGKGNKIVTIPAASAKERTDLLVKLLLISENSSLVFHSGKRKITLKP 715

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
            DL  +  +RG  G+ +P+G 
Sbjct: 716 EDLQKYRAERGRKGTQLPRGL 736


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/767 (33%), Positives = 401/767 (52%), Gaps = 62/767 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + K
Sbjct: 13  DDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASYESGYHWNRKYVK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTEA
Sbjct: 73  SARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSIDGDPPAAMRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T+VA  +L+ +D+D VDF+DTY+   SEP + P++FPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALIDNP + + +LLE I GPDFPTGGII+  R  I  +Y  GRG   +R 
Sbjct: 193 NLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIIL-GRSGIHSAYATGRGSVVMRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      I++TE+PYQV K+++IEK+AEL+  KRI  + DIRDES      V+ 
Sbjct: 252 KTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIRDESDRQGYRVVI 311

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++  ++  + ++T F  NM  L+ G  P+VM L  +L+ ++A R EV+ R
Sbjct: 312 ELKRDANAEVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLLDMLRAFVAFREEVVTR 370

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------------------- 413
           R+ + ++ +  R  +L GL IA  NIDE+I +IR    P                     
Sbjct: 371 RTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMERRWPAQDVESLI 430

Query: 414 --------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                   K      ++L+E Q  AIL+LRL+ L  L   +I  EL+ + AE +    +L
Sbjct: 431 LLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIQDYLDIL 490

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S  +    +  E+  V++ F        RRT   E++        + +I +E + V ++
Sbjct: 491 SSRARVQGIVKDELIAVRDEFGTP-----RRT---EITEGGADMEDEDLIPREDMVVTVT 542

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++G+I+                 S +  K+ D +     A+T   IL  S+ G  Y    
Sbjct: 543 HKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYKEKV 602

Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L  G     G+ ++ ++ L   + I +               ++  +++G     + S
Sbjct: 603 WRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRNKLS 662

Query: 630 EIIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK- 685
           +     R GK  +K+    +++  V   T  D V +   + + + F +  +     R   
Sbjct: 663 DFTQVNRNGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSI 722

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           GVR  +  DG    VI   I  G      A R+    +      L  
Sbjct: 723 GVRGINLPDG--DKVISMAIV-GHVDATPAERAAYLKQAAAERRLSN 766



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG---EAIQ 591
            +S+ +  ++  +GD +            +  +   +A  L          +G   E I 
Sbjct: 719 RNSIGVRGINLPDGDKVISMAIVG----HVDATPAERAAYLKQAAAERRLSNGSDEEEIA 774

Query: 592 LLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS 645
           L  +    + +++   Y+        +L VS  G        +     R  KG     VS
Sbjct: 775 LTNEEVGEETVLSPERYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVS 834

Query: 646 SEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
             E++  ++        D + +V    +++   +  I   SR  KGV + +  DG
Sbjct: 835 KREEIGSLIAAFPVAPEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADG 889


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/771 (31%), Positives = 401/771 (52%), Gaps = 32/771 (4%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M +D+    + +     ++    L   +   +L Y++S I  RA+PD+RDG KPV RRI+
Sbjct: 1   MALDDFMEFDESNFDPGHITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           ++M EM +    A++KSARIVG+ +GK HPHGD S+Y +LV LAQP+  R  L+ G GNF
Sbjct: 61  YSMHEMNIGPDKAYRKSARIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+++A  +L+ +++D VD  D Y+ ++ EP V PS++PNL+ N
Sbjct: 121 GSMDGDDPAAMRYTEARMSKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT++  HN+ E  +   A++DNPEI+  +L+ Y+ GPDFPTG  I+  R  
Sbjct: 181 GSSGIAVGMATNVAPHNLGETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYIL-GRSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I +++  GRG   +RA+  +EE+  G   IVV E+PY V K+ L+E+IA L+  K I  +
Sbjct: 240 IRQAFETGRGSVIMRAKTKIEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   V+    + + PD+++  ++  + +++ F +N  VL    VP+   + 
Sbjct: 300 TDLRDESNMDGIRVVIELRKDIQPDVMLNQLYRSTPLQSNFGVNNVVL-FNGVPRQASMI 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM- 417
            +LK ++A + EV+ RR+ F ++    R  IL+GL IA  N+D II  IR+   P   M 
Sbjct: 359 DLLKGYIAFQDEVIVRRTQFDLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMP 418

Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             +  F L E Q  AIL+++ R L  LE  +I++E  +LL +      +L++  +    I
Sbjct: 419 RLMEGFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDLLIKIADFQDILSNHARVLQII 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ EVK  F+       RR+   +          + +I  E I + +S+ G+I+    
Sbjct: 479 RDELSEVKAKFNDP-----RRSEIIDAIA---DVEDEDLIPVENIIITLSSNGYIKRLTT 530

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                       +  +   + D +   +   T D +L+ +  GK Y +   N+   S   
Sbjct: 531 DTYHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYRIKGYNVPEFSRTS 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G     LI +   ++I     Y        L  V+ +G        E     + GK  +
Sbjct: 591 KGIPAINLISMEKTENIRALVPYSQDHDSKFLFFVTKQGIIKRTTFDEYENINKNGKIAI 650

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           K++ ++++  V    G+  + + G N K + F  + +  + R  +GV+  +   G +  +
Sbjct: 651 KLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPLGRTARGVKGFNVDGGYVIGL 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 EG   +      + +  +     + +RG  G        +SGK +
Sbjct: 711 ATN--LEGEYILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQKSGKLV 759



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 78/246 (31%), Gaps = 23/246 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +   +A +  +          ++ +G I+                A+   E D L   
Sbjct: 602 EKTENIRALVPYSQDHDSKFLFFVTKQGIIKRTTFDEYENINKNGKIAIKLNEDDELAFV 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   I++  ++GKA       +  L     G     +        ++         
Sbjct: 662 RSTDGNAEIIIAGSNGKAVRFLENTVRPLGRTARGVKGFNV----DGGYVIGLATNLEGE 717

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENR 668
            +L ++  G       ++     R  +    V+      K+  +  V GD    ++    
Sbjct: 718 YILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQKSGKLVCMRAVRGDEDCMIMTAGG 777

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA------GRSYNR 721
            ++  S+ Q+   SR  +GV++ + KD  +S V   +  E    +D +         +  
Sbjct: 778 IVIRISLKQVSVYSRSAQGVKVINVKDDIVSSVAILEPEEDSEVVDISHNEVLDEGVFEE 837

Query: 722 SENDLL 727
           + +D  
Sbjct: 838 TPDDEE 843


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/784 (31%), Positives = 400/784 (51%), Gaps = 44/784 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N ++ + +V  N++ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 7   MAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYA 66

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     A+ K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL +GQGNFG+
Sbjct: 67  MYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGS 126

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE RM Q+A  +++ +D++ VDF+D Y+    EP V P++FPNLL NG+
Sbjct: 127 PGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGS 186

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESR 236
           +GIAVGMAT+IP HN++E+ E     + NP+ S E+L E     I GPDFPTG  I+  R
Sbjct: 187 AGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGATIL-GR 245

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L    RI 
Sbjct: 246 SGIDDAYRTGRGSITMRAVVNVEEI-QGRQCLVVTELPYQVNPDNLALKIADLTKEGRIQ 304

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + DIRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ +
Sbjct: 305 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDG-VPRTL 363

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            +D  +  W+ H+ +V+ RR++F ++  + ++ IL+G L A  N+DE+IA+IR     ++
Sbjct: 364 SIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVEE 423

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + + Q  AILNL+LR L  LE  +I  E D+L  +      +L S ++Q 
Sbjct: 424 ARGGLIELLGIDDIQATAILNLQLRRLAALERQKIIDEHDDLERQILDYRDILASPQRQR 483

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           + +  E+ E+ + +        RR+T             + +I +E + V I+  G+++ 
Sbjct: 484 DIVGSELSEIVDRYGDE-----RRSTIL---PYGGEVSMEDLIAEEDVVVTITRGGYVKR 535

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
                    K     +     +E D +       T   +L  +  G+ Y   A  L  G 
Sbjct: 536 TRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGS 595

Query: 585 --GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+     + I        Y+    L++ +  G       SE   N   G 
Sbjct: 596 RESKGQHVANLLAFQPGESIAQVLALRNYEDHEYLVLATRSGLVKKTRLSEYDTNRSAGL 655

Query: 640 TFLKVSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQ 690
             +K+        +++   + V  D  + ++    + + F+ D   +  M RG  GV   
Sbjct: 656 IAIKLREYDDGSVDELVKAMPVNADNDLILISRLGQSIRFTADDASLRPMGRGTSGVIGM 715

Query: 691 SYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            + DG  +      K    L  +   G  + +        +  RGG G  V K     G 
Sbjct: 716 KFADGDELLSADVVKDDADLFVVTDGG--FAKRTAISEYRVQGRGGQGVKVAKLVEDRGH 773

Query: 750 FLSS 753
            + +
Sbjct: 774 LVGA 777



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 19/213 (8%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKE-----GDSLKIALHAHTTDRI 563
            E     V+ +  G ++  +    D +      A+  +E      D L  A+  +  + +
Sbjct: 624 YEDHEYLVLATRSGLVKKTRLSEYDTNRSAGLIAIKLREYDDGSVDELVKAMPVNADNDL 683

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           +L+S  G++    A +  S R  G     +I        ++++A V      L VV+  G
Sbjct: 684 ILISRLGQSIRFTADD-ASLRPMGRGTSGVIGMKFADGDELLSADVVKDDADLFVVTDGG 742

Query: 622 NAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
            A     SE     R G   K    V     +   +     D V V+ E  K++  ++ +
Sbjct: 743 FAKRTAISEYRVQGRGGQGVKVAKLVEDRGHLVGALITEQDDEVLVIMEKGKIVRSAVAE 802

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +    R  +GV             +   +   L
Sbjct: 803 VNRTGRNTQGVTFAKPDKKDRIIAVARNVERSL 835


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/752 (37%), Positives = 430/752 (57%), Gaps = 25/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E ++  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A 
Sbjct: 1   MNYEGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+   +EL+L  + +  V++   ++    EP V P++ PNLL NGT+GIAVGMAT 
Sbjct: 121 YTESRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L++NP+  +  LLE+I GPDFPT   I+  R  I+E Y  GRG  
Sbjct: 181 IPPHNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RAR+  E+       IV+T +P+Q   S+++E+IA  + AK++P++ D+RDES  +  
Sbjct: 241 RMRARFEKEDGD-----IVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  +LKEWL  R
Sbjct: 296 TRLVIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + RR   R+  +  R+ IL GLLIAYLNIDE+I IIR EDKPK  ++ RF L++ Q 
Sbjct: 356 HETVRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKPKLKLMERFDLSDRQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           ++IL L+LR L KLEE +IK E   L  E + +   L S ++    I  EI EV E +  
Sbjct: 416 ESILELKLRHLAKLEEMKIKGEQSELEDEADWLQLTLGSKQRMKTLIKKEIEEVIEQYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E     KA  +  ++  EP+TV++S +GW+R  K H VD   ++++ G
Sbjct: 476 -----DRRSPIVERKE-AKALSETELLPTEPVTVILSEKGWVRCAKGHDVDAVGMNYRSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    +    +    + L + G+ ++L A  L S RG GE +   ++     + +   + 
Sbjct: 530 DKYLDSAQGKSNQYAVFLDSTGRTFSLLANTLPSARGLGEPVTGRVNPIAGAEFMATMMG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
           +   K L  +  G  F+ + S+++  TR GK FL + S  K+     V          V 
Sbjct: 590 EDDDKFLFATDAGYGFVAKFSDLVTKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQS-------YKDGGISDVICFKICEGLTWIDSAGRS 718
              ++L+F +  +PE+++GKG ++ S        ++  +  V      + L  I S  R 
Sbjct: 650 NEGRMLVFPLADLPELAKGKGNKIISIPTAKLKLREEFMIAVTAIGEDDSL-VIHSGKRH 708

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  + G+RG  G  +P+GF R  + 
Sbjct: 709 LTLKPKDLEHYRGERGRRGHKLPRGFQRVERI 740


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/777 (30%), Positives = 395/777 (50%), Gaps = 44/777 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N   +    +++V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G  
Sbjct: 18  NGLAIEHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYR 77

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              AF K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D AA
Sbjct: 78  PDRAFSKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPAA 137

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM  +A  +++ +D+D VDF+D Y+    EP + PS+FPNLL NG+SGIAVGM
Sbjct: 138 APRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVGM 197

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+ E     +D+P+ S E+    L+  I GPDFPTG  I+  R  I ++Y
Sbjct: 198 ATNIPPHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATILGHR-GIEDAY 256

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   VEE+ +   C+VVTE+PYQV    L  KIAEL+   R+  + DIRD
Sbjct: 257 RTGRGSITMRAIVNVEEI-QNRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIRD 315

Query: 304 E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ + +D  ++
Sbjct: 316 ETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSIDAFIR 374

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            W+AH+ EV+ RR++F ++  + ++ I +G L A   +D++IA+IR   + D+ +  ++ 
Sbjct: 375 HWVAHQLEVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRARQGLIE 434

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AILN++LR L  L+  +I  E D L  E  +   +L    +Q   ++ E+
Sbjct: 435 MLDIDEIQATAILNMQLRRLAALQRQEIIDEHDKLEKEILEYQDILAKESRQRQIVSDEL 494

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IR 531
            E+   +        RRTT             + +I +E + V I+  G+         R
Sbjct: 495 NELVAKYGDE-----RRTTVL---PHAGEVSMEDLIAEEEMVVTITRGGYAKRTRSDNYR 546

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
           + K     +     +E D +       T   +L  +  G+ Y   A  L  G     G+ 
Sbjct: 547 AQKRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQH 606

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+     + I        YD    L++ + +G       SE  +N   G   + +  
Sbjct: 607 VANLLAFQPGEKIAQVLDLRDYDVADYLVLATRRGTVKKTRLSEYDSNRSGGVIAINLRE 666

Query: 647 E-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           +     +++     V   D + +V    + + F+     +  + R   GV    +++   
Sbjct: 667 DADGQPDELVSARLVDATDDLILVSRKGQSIRFTASDEAMRPLGRATSGVTGMKFRED-- 724

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +++   +  +G          + +  +     +  RGG+G  V       G  + +
Sbjct: 725 DELLAMDVVRDGAHLFVVTEGGFAKRTSVDEYRVQGRGGLGIKVANLVEARGDLVGA 781



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 19/206 (9%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRILLLSTDG 570
           V+ + RG ++  +    D +      A++ +E      D L  A     TD ++L+S  G
Sbjct: 635 VLATRRGTVKKTRLSEYDSNRSGGVIAINLREDADGQPDELVSARLVDATDDLILVSRKG 694

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           ++    A +  + R  G A   +  +    + +++   V      L VV+  G A     
Sbjct: 695 QSIRFTASD-EAMRPLGRATSGVTGMKFREDDELLAMDVVRDGAHLFVVTEGGFAKRTSV 753

Query: 629 SEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
            E     R G      +      + +  +V    D V V+ E  K++  +++Q+    R 
Sbjct: 754 DEYRVQGRGGLGIKVANLVEARGDLVGALVTDEDDEVLVIMERGKIVRSAVNQVHLTGRT 813

Query: 685 K-GVRLQSYKDGGISDVICFKICEGL 709
             GV             +   +   L
Sbjct: 814 TQGVTFAKPDKNDRIIAVARNVERNL 839


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/764 (31%), Positives = 387/764 (50%), Gaps = 50/764 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +LR  ++  YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL     ++K A
Sbjct: 4   IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGD +VYD+LVRLAQ F  RY LI G GNFG++D D  AA RYTE R+
Sbjct: 64  RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123

Query: 137 TQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           T +     L  ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP H 
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +   AL+ NP + I +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +R  
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTIL-GQSGIREAYTTGRGSITMRGV 242

Query: 256 WCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
             +E +          IV+TE+PYQV K+ LIEKIAEL+  KRI  + DIRDES  D   
Sbjct: 243 AAIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R   P +++ ++F L+ ++T F  NM  L  G  P+++ L   L+ ++  R EV
Sbjct: 303 AVIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGE-PRLLNLKEFLQTFIDFRAEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ + ++    R  IL G+L+A  N++ +IA+IR  D     +  +V+RF L+E Q 
Sbjct: 362 ITRRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL ++LR L  +E  +I++E   L+A+   +  +L   ++    I  E+   K+  + 
Sbjct: 422 EAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLERRERIDQIIRDELLTAKQRLND 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540
                  R T  E  +A+       +I  + + V+++ +G+I+ L   + D         
Sbjct: 482 P------RRTIIE--KAEGEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGK 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S    +E D+++  +     D +L  +  G  Y L    +   S    G  +  L+ +  
Sbjct: 534 SGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGSRTAKGTPVVQLLPIPI 593

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + + +      + S   L++++  G       +        G   + +   ++++ V +
Sbjct: 594 EEKVTSIVPVQEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRWVRR 653

Query: 656 V-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE---- 707
               D + V       + F    +Q+  + R  +GV+    + G   +++   I      
Sbjct: 654 ARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMELRKG--DELVSMDILSCEQR 711

Query: 708 ---------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                    G   +      + +           RGG+G +  K
Sbjct: 712 ERAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATK 755



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 28/223 (12%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
             +     + +       +   V+++  G+I+           +  L A+  +EGD L+ 
Sbjct: 591 IPIEEKVTSIVPVQEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRW 650

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
              A   D IL+ S  G A    A        GR     ++ + +L    ++V+  +   
Sbjct: 651 VRRARAEDDILVGSRAGMAIRFRADEEQLRPLGR-TARGVKSM-ELRKGDELVSMDILSC 708

Query: 611 TCK------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVK 655
             +            +LVV++ G    V  SE  A  R G   +        +++  +  
Sbjct: 709 EQRERAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAALRV 768

Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           V+  D + +V     ++    ++I + SR   GVR+Q   +  
Sbjct: 769 VSCEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDD 811


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/841 (31%), Positives = 405/841 (48%), Gaps = 116/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKL------LVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T                +  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGG------------------------------------ISDVICFKI------ 705
           R  +  +G                                       D++          
Sbjct: 722 RGINLAEGDKVISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEA 781

Query: 706 -----------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFL 751
                          T +  +   Y +  +     +  RGG G        ++   GK +
Sbjct: 782 ELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGKLV 840

Query: 752 S 752
           +
Sbjct: 841 A 841



 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            + ++   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDVTPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/834 (32%), Positives = 401/834 (48%), Gaps = 118/834 (14%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPVHRRI++ M E G ++   ++KSAR VG+VIGK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++DGD  AA RYTE+R+T++A+ +L 
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  + EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P +SI+ L + + GPDFPTGGII+  R  I  +Y+ GRG   +R +  +E V +  
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGKVEIETVRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R   P+++
Sbjct: 240 EAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L  G  PQ+M L  +L  ++A R +V+ RR+ F +     
Sbjct: 300 LNQLYKFTPLQTNFGANMVALE-GGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------------------KPV 416
           R  IL GL IA  NIDEII +IRN   P                             K  
Sbjct: 359 RAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I  ELD L  E      +L S  +    + 
Sbjct: 419 PDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  F+       RRT   E    +     + +I++E + V +S+ G+++     
Sbjct: 479 TELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                +      S +  +E D +     A T   +L  S+ G+ Y      L      G 
Sbjct: 531 TYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  ++ GN    + S+ +   R G  
Sbjct: 591 GKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGII 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGI 697
            +K+   E +  V   T  D V +     + + F +  +     R   GVR  +   G  
Sbjct: 651 AMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSG-- 708

Query: 698 SDVICFKI--------CEGLTWIDSAG--------------------------------- 716
             VI   I         E  T++  +G                                 
Sbjct: 709 DTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQE 768

Query: 717 -----------------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                              Y +  +        RGG G +      R+GK ++S
Sbjct: 769 RYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVAS 822



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R GK  + +S      K+     V   D + +V 
Sbjct: 776 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVT 835

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +N +L+   ++ I    R                VI F   +    +  
Sbjct: 836 DNGQLIRCPVEGIRVAGRST------------QGVIVFNTADDEKVVSV 872



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             +L +S +G      +    +    G+ I  +   + N  +V +F  + + ++++V+  
Sbjct: 778 QFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRNGKLVASFPVEDSDQIMLVTDN 837

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
           G         I    R   G      + +EK+  V ++        GEN 
Sbjct: 838 GQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD---GENG 884


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/757 (31%), Positives = 396/757 (52%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKS
Sbjct: 9   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 69  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +++ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN
Sbjct: 129 MSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+
Sbjct: 189 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +   ++  
Sbjct: 248 VEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVID 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 308 VRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGA-PKILSLKEILQYYLEHQEEVVRRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL
Sbjct: 367 TEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  F      
Sbjct: 427 DLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNKF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T  +V        +  + E++   V +++ G+++                +  + 
Sbjct: 481 GDERRTELQVGDISNIEDEDLIEEEDI-IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINVAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ +G ++              + A++  EGD L           ++L +  G A T 
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATF 676

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S       ++    L     ++ A   +   ++LV+S KG       SE     
Sbjct: 677 KVSAVRSMGRSAAGVRGA-RLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKG 735

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R G     V+  EK   +  +  V GD  + VV +   ++ F ++ + +  R   GV L 
Sbjct: 736 RGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLI 795

Query: 691 SYKDGGISDVICFKICEGLT 710
                 +  V      E  T
Sbjct: 796 KMDADSV--VATMTKVEKET 813



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +  A+++ +   ++ ++ G         +RS+   +  +     ++GD L  A   +
Sbjct: 650 DELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYLIGAAPLN 709

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D++L++S  G     PA         G  I+ +     N  +           L+VV+
Sbjct: 710 EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVT 769

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            KG         +    R   G   +K+ ++  +  + KV  +
Sbjct: 770 DKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKE 812


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/768 (31%), Positives = 399/768 (51%), Gaps = 35/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N +    +K  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSERNDM---RIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  R+ LI G GNFG++DGDS
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDS 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++++A  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG SGIAV
Sbjct: 118 PAAMRYTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP+HN+ E+  A   L+DNP+++  +L+  + GPDFPTG I++  +  I  +Y  
Sbjct: 178 GMATSIPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVM-GKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+++EL+  KRI  +  IRDES
Sbjct: 237 GRGTVTVRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V     R     +++ +++  + ++T F  NM  +     P+ + L  IL  +L
Sbjct: 297 DREGLRVSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAI-DHGKPKTLNLKEILVAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            H+REV+ RR++F ++    R  IL+GL IA  +ID II+IIR+    D+ K  ++  +S
Sbjct: 356 EHQREVIRRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIESYS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L A    +  +L    +    I  E+ ++
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKDILAHSARVDKIIYNELLDI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G  R T  +V        +  +  +E + V +++ G+I+           
Sbjct: 476 QQKF------GDERRTELQVGDVTNIEDEDLIE-EEDVIVTLTSNGYIKRVPTAEFKAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  ++  + D ++  +   T + +L  +  GK Y +    +        G  +  
Sbjct: 529 RGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPEYGRHAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L++ ++++ I T              L  V+  G        +       G   L +  +
Sbjct: 589 LLNFDNDEKIQTLISVSDQTAASESYLFFVTQLGVVKRTAVKDFSNIRTNGLKALTLHDD 648

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V+   G+  + +   +   + FS   +  M R   GVR    +D  I  VI   I
Sbjct: 649 DEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVMGRSAAGVRGIRLRDDDI--VIGADI 706

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  +      Y +        +  RGG G        ++G  + 
Sbjct: 707 LNPKANVLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKNGSLVG 754



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 71/215 (33%), Gaps = 12/215 (5%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
            ++       E     ++  G ++              L AL   + D +   +  +   
Sbjct: 602 ISVSDQTAASESYLFFVTQLGVVKRTAVKDFSNIRTNGLKALTLHDDDEVLNVMITNGEQ 661

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            I++ + DG + +    ++         ++  I L  +  ++ A + +    +LV++  G
Sbjct: 662 NIIIATHDGYSVSFSESDVRVMGRSAAGVRG-IRLRDDDIVIGADILNPKANVLVITENG 720

Query: 622 NAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
                  +E     R GK      +   +   + + +    + + +      ++ F+ D 
Sbjct: 721 YGKQTAATEYPIKGRGGKGIKTANITAKNGSLVGMTIVDGDEDIMLTTNQGVMIRFTADS 780

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           + +  R   GVRL   +       +     E L  
Sbjct: 781 VSQTGRATLGVRLIRLEKETKVATLAKVDPETLDT 815



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D   L   +   E   ++ ++ G+        +R +   +  +  +  ++ D +  A 
Sbjct: 646 HDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVMGRSAAGVRGIRLRDDDIVIGAD 705

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             +    +L+++ +G      A         G+ I+       N  +V   + D    ++
Sbjct: 706 ILNPKANVLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKNGSLVGMTIVDGDEDIM 765

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           + +++G         +    R   G   +++  E K+  + KV 
Sbjct: 766 LTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVD 809


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/765 (30%), Positives = 390/765 (50%), Gaps = 29/765 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++ T  +  ++ V L   +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G
Sbjct: 1   MDDNQTQ-DRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEV+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD 
Sbjct: 60  VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM+++A  +L+ ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAV
Sbjct: 120 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T+IP HN+ E+      L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  
Sbjct: 180 GMTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYES 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA   +E    G   I+V+EIPY V K+ L++KIA+L   K I  +  +RDES
Sbjct: 239 GKGNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    +     R     +++ ++F  + M+  F +NM  +  G     + L  +L+ +L
Sbjct: 299 DQTGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
            H+++V+ RR+ F +   + R  IL+GL IA  NIDEI+ II    + D  K  ++SRF 
Sbjct: 358 DHQKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L + Q  AIL++RL  L  LE  ++++E   L A+      +L   ++    I  E+ ++
Sbjct: 418 LDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           ++ F      G +R T    S    +   + +IEK+ I + +++ G+I+           
Sbjct: 478 QKRF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        G  +  
Sbjct: 531 RGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVN 590

Query: 593 LIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + + T            L  ++  G       SE       G   L +   ++
Sbjct: 591 LLQLEKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 650

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V+   G    ++G +    + F+   +  M R   GVR  + +D     V    +  
Sbjct: 651 LSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAMGRTAAGVRGINLRDHDYV-VGSGVLDA 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  +   Y +        +  RGG G        ++G    
Sbjct: 710 DDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAG 754



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 595 EKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  +  +V + V D+  ++
Sbjct: 655 LTTDGKQNILIGTHLGYAVTFNEKDVRAMGRTAAGVRG-INLRDHDYVVGSGVLDADDQV 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S  G       +E     R GK      +   +     ++V   G  + V+  +  +
Sbjct: 714 LVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGIM 773

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 774 IRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/783 (30%), Positives = 397/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 28  DNTDYGLMVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDG 87

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 88  GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDD 147

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 148 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 207

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+P+ S E+LL+     I GPDFPTG  I+   + I 
Sbjct: 208 VGMATNIPPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIE 266

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D
Sbjct: 267 QAYRTGRGLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIAD 325

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 326 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     
Sbjct: 385 FIRHWVNHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTG 444

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 445 LMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVG 504

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 505 DELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRTKAD 556

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 557 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 616

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      YD    L++ +  G       +E  +  + G   ++
Sbjct: 617 GQHVANLLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 676

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V +    L F  +   +  M R   GV+   ++
Sbjct: 677 LMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFR 736

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DG   +++   + +G +    +      + +        L  R G G    +     G  
Sbjct: 737 DG--DELLAMDVVQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSL 794

Query: 751 LSS 753
           + +
Sbjct: 795 VGA 797



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   +  D I+L+S  G +    A +      GR     +Q +   + ++ + + 
Sbjct: 687 DELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTA-GVQGMKFRDGDELLAMD 745

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               DS   LLVV+++G A     SE     R G     V   E     +  V+    D 
Sbjct: 746 VVQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGAVIVEESDQ 805

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  + ++ K++  ++ ++    R   GV L   K     ++I     E
Sbjct: 806 IMAIMKSGKVIRSNVAEVKRTGRTTQGVTL--AKPDKNDEIISIARNE 851


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/779 (30%), Positives = 395/779 (50%), Gaps = 40/779 (5%)

Query: 3   VDNISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           ++  +NS  +V ++    ++ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I
Sbjct: 12  IEVTTNSGEIVLDDPHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVI 71

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G     AF K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL  GQGNF
Sbjct: 72  YAMYDGGYRPDRAFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNF 131

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+   D AAA RYTE +M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL N
Sbjct: 132 GSPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVN 191

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVE 234
           G+SGIAVGMAT+IP HN++E+       + NP  + E+    L+E I GPDFPTG  I+ 
Sbjct: 192 GSSGIAVGMATNIPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATIL- 250

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             + I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIA+LI   +
Sbjct: 251 GTKGIEDAYRTGRGSITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIADLIKEGK 309

Query: 295 IPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  + D+RDE S    + ++    R   P +++ +++  + ++  F  NM  +  G VP+
Sbjct: 310 VTGISDLRDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPR 368

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--- 410
            + LD  ++ W+ H+ +V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     
Sbjct: 369 TLSLDAFIRHWVNHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTA 428

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+ +  ++    + E Q  AILN++LR L  LE  +I+   D L     + ++++ S  +
Sbjct: 429 DEARSALMDFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLISEYNAIIASEDR 488

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
           Q   I+ E+ E+   +        RRT        D +   + +I +E + V I+  G+I
Sbjct: 489 QREIISEELGEIVNRYGD-----DRRTEILRGFNGDMSM--EDLIPEEEVVVTITRGGYI 541

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-- 580
           +                +     +  D ++      T   IL  +  G+ Y      L  
Sbjct: 542 KRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQE 601

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
                 G+ +  L++   ++ I        Y+    L++ +  G       S+   N   
Sbjct: 602 AGRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDTNRTA 661

Query: 638 GKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYK 693
           G   + +  ++++     V+  D + ++  N   L F    + +  M R   GV    ++
Sbjct: 662 GLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPMGRSTSGVTGMKFR 721

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           DG         I E   ++ + G  Y +  +     +  R G G  V K     G  + 
Sbjct: 722 DGDELISAQVVIPESFVFVVTEG-GYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVG 779



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +     E     V+ +  G ++  +    D +      A++ ++ D +  A
Sbjct: 618 QPDEHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAGLIAINLRDDDEVVSA 677

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL+S +G +    A N  S R  G +   +  +      ++++A V     
Sbjct: 678 FLVSPEDDILLISRNGMSLRFHANN-ESLRPMGRSTSGVTGMKFRDGDELISAQVVIPES 736

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE--EKMKLVVKVTGDHVAVVGENR 668
            + VV+  G A            R G      K+       +  ++    D V VV ++ 
Sbjct: 737 FVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSG 796

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           K++  ++ ++P   R   GV     K G    +I     + 
Sbjct: 797 KVVRTNVSEVPAKGRDTMGVIF--AKPGKGDSIIGIARNQD 835


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 417/757 (55%), Gaps = 31/757 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M ++GLD     +
Sbjct: 4   NQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ + +D VDF   ++ E+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + NPEISI+ L+++I GPDFPTG +I+  +  I E+Y  GRG  + R
Sbjct: 184 HNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALIL-GKTGIKEAYTTGRGKIKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I+++EIPYQV K+RLIEKIA+L+  KRI  + DIRDES      ++
Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +E  F +    L  G  P+++ L  +++ ++ H++EV+ 
Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALV-GGEPKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR+    D+ K +   R+ L++ Q  A
Sbjct: 362 RRTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDRYKLSDAQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L    E + S+LNS +   N I  EI E+KE +S   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENKELADTIEYLLSILNSEENLINLIIDEITEIKEKYSDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT        +       +IE+E I + ++  G+I+                ++A
Sbjct: 481 ----RRTKIV---PDEGEIDITELIEEEDILINLTKDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
            + KEGD +K  +  +T + +L  ++ GK Y+L A  +   S    G+AI  +++L   +
Sbjct: 534 GNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSRTSRGQAIINILNLETGE 593

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I             +L++ + +G     +        R G   + +   +K+  V ++ 
Sbjct: 594 KITEMMTLSELSKNSQLVLQTQQGQIKKTDAENFTNIRRNGIIAISLKDWDKLISVRQID 653

Query: 658 GDHVAVVGE-NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
            D   ++   N   + F+   +  M R   GVR           V+   I  E    +  
Sbjct: 654 KDEELIISTQNGMTIQFNTKDVRSMGRSAVGVRAIRL--DKDDAVVSMNIKGEETYLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               + +  +        RGG G    K   ++GK +
Sbjct: 712 TENGFGKKTSFSNFKNQNRGGKGVRCHKVSEKTGKVV 748



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 86/241 (35%), Gaps = 16/241 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSH 536
           +   K      T  G+       +   +K T    + E  K    V+ + +G I+   + 
Sbjct: 566 LEAYKIPEGSRTSRGQAIINILNLETGEKITEMMTLSELSKNSQLVLQTQQGQIKKTDAE 625

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +        + A+  K+ D L         + +++ + +G        ++ S       +
Sbjct: 626 NFTNIRRNGIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSMGRSAVGV 685

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE- 647
           +  I L+ +  +V+  +      LLVV+  G       S      R GK     KVS + 
Sbjct: 686 RA-IRLDKDDAVVSMNIKGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSEKT 744

Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICF 703
            K+   + V  D  + +V     ++  S   +    R   GV+L++   ++  I  V  +
Sbjct: 745 GKVVDTLPVDLDTDIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSVTTY 804

Query: 704 K 704
            
Sbjct: 805 D 805



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 78/232 (33%), Gaps = 25/232 (10%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEK-IDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           + L  L K  +  ++++   +     +   ++     ++   IA  +++  ++ S     
Sbjct: 599 MTLSELSKNSQLVLQTQQGQIKKTDAENFTNI-----RRNGIIAISLKDWDKLISVRQID 653

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
                     +        +                 +RS+   +V + A+   + D++ 
Sbjct: 654 KDEELIISTQNGMTIQFNTKD----------------VRSMGRSAVGVRAIRLDKDDAVV 697

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +L+++ +G        N  +    G+ ++          +V     D   
Sbjct: 698 SMNIKGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSEKTGKVVDTLPVDLDT 757

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
            +++VS KG+   +   ++    R   G     ++S E+  +V   T D++ 
Sbjct: 758 DIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLAS-EEDAIVSVTTYDNML 808


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/757 (31%), Positives = 396/757 (52%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKS
Sbjct: 9   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 69  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN
Sbjct: 129 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+
Sbjct: 189 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +   ++  
Sbjct: 248 VEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVID 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 308 VRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGA-PKILSLKEILQYYLEHQEEVVRRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL
Sbjct: 367 TEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  F      
Sbjct: 427 DLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNKF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T  +V        +  + E++   V +++ G+++                +  + 
Sbjct: 481 GDERRTELQVGDISNIEDEDLIEEEDI-IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINVAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ +G ++              + A++  EGD L           ++L +  G A T 
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATF 676

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S       ++    L     ++ A   +   ++LV+S KG       SE     
Sbjct: 677 KVSAVRSMGRSAAGVRGA-RLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKG 735

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R G     V+  EK   +  +  V GD  + VV +   ++ F ++ + +  R   GV L 
Sbjct: 736 RGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLI 795

Query: 691 SYKDGGISDVICFKICEGLT 710
                 +  V      E  T
Sbjct: 796 KMDADSV--VATMTKVEKET 813



 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +  A+++ +   ++ ++ G         +RS+   +  +     ++GD L  A   +
Sbjct: 650 DELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYLIGAAPLN 709

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D++L++S  G     PA         G  I+ +     N  +           L+VV+
Sbjct: 710 EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVT 769

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            KG         +    R   G   +K+ ++  +  + KV  +
Sbjct: 770 DKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKE 812


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 440/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + V      +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYSV-----DAGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++    I  E+ + 
Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHE-SRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREM 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/770 (30%), Positives = 406/770 (52%), Gaps = 30/770 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +  N+N   +  +K   L   +   +L+YA+S I  RA+PD+RDG KPVHRRI+  M+
Sbjct: 1   MADEENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMN 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+      KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF  RYPL+ G GNFG++D
Sbjct: 61  ELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEAR++++A  +L+ +++  VDF+ +Y+ ++ EPVV PS+FPNLL NG  G
Sbjct: 121 GDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN++E+  A   L+ NP+ ++  L+E + GPDFPTG I++  +  I  +
Sbjct: 181 IAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   VR++  +E    G   I V+E+PY V K++LIE+I EL++ K++  +  IR
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES ++   +     R  + ++++ +++  + ++T F  NM  ++    P+ M L  IL 
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAIN-HGKPETMSLKQILV 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L H+RE++ RR+ F ++    R  IL+GL IA  +ID II +IR+ +     K  +++
Sbjct: 359 AYLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELIN 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+ L++ Q  AIL++RL  L  LE  +I++E  +LL   E    +L   ++    I  E+
Sbjct: 419 RYQLSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPERIDQIIYQEL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++   F      G  R T  +V     +   + +I++E + + ++++G+I+        
Sbjct: 479 LDIANKF------GDERRTELQVGDV-SSIEDEDLIDEEEVLISLTHKGYIKRLSTSEFH 531

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +  ++  + D ++  +   T D +L  S  GK Y +    +     +  G  
Sbjct: 532 TQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIP 591

Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +  L+ L+  + +                L   +  G       SE     + G   + +
Sbjct: 592 VINLLGLDAGERVQAVINVRGDAATSKDFLFFTTKLGTVKRTAVSEFTNIRQLGLRAINL 651

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +  V+   G  ++ +   +   + F+   +  M R   GVR  + +D     V  
Sbjct: 652 RDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMGRTASGVRGMNLRDKDYV-VGA 710

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  G   +    + Y +        +  RGG G        ++G    
Sbjct: 711 DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKNGPLAG 760



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 69/194 (35%), Gaps = 12/194 (6%)

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                +      +  G ++            + L A++ ++ DSL   L  +    I++ 
Sbjct: 613 DAATSKDFLFFTTKLGTVKRTAVSEFTNIRQLGLRAINLRDDDSLISVLLTNGKQNIVIA 672

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S  G A +    ++ +       ++ + +L     +V A +      +L+++ KG     
Sbjct: 673 SHSGYAVSFAESDVRAMGRTASGVRGM-NLRDKDYVVGADLLIPGDNVLIITEKGYGKQT 731

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK +    +   +     L V    + + +  ++  ++ F+   +    
Sbjct: 732 AVEEYPIRGRGGKGYKTSNISSKNGPLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITG 791

Query: 683 RGK-GVRLQSYKDG 695
           R   GV +   ++G
Sbjct: 792 RATLGVHVIKIEEG 805


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 425/757 (56%), Gaps = 34/757 (4%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K + +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ +   +KKSAR
Sbjct: 12  KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD +VY ++VRLAQ F  RY LI+G GN+G+IDGD AAA RYTEARM 
Sbjct: 72  IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++  +L+ +D++ +DFR  ++E   EP V P+K PNLL NG +GIAVGMAT+IP HN  
Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+C+  +A+I+NP+I+I++L+ YI GPDFPTGGI +  R  I+E+Y+ GRG  RV  +  
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGI-INGRSGIIEAYKTGRGKVRVAGKIK 250

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE   G   I+V E+PYQV K+RLIE+IAEL+  K++  + D+RDES  D   V+    
Sbjct: 251 IEESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELK 310

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  + +L++ S++  +D++  F +    L     P+V+ L  IL+ +L HR  V+ RR+ 
Sbjct: 311 RGEESELILNSLYKYTDLQNTFGIIFLALVDNA-PRVLNLKEILQNYLKHRYSVVTRRTK 369

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +   ++R  IL+G  IA  NIDE+I IIR     ++ K  +++ F+ +E Q  AIL++
Sbjct: 370 FELDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMAGFAFSEVQAKAILDM 429

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I+ E   L+   E++ ++L+   + +  I  E++++KE FS       
Sbjct: 430 RLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIKEDFSDP----- 484

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+  A      + +I+ E + V ++++G+++          K   + +SA +  
Sbjct: 485 RRT---EIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVSATNIL 541

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ---D 601
           E D +K    A   D +L+ +T GK + +    +     +  G  I  +I L  ++    
Sbjct: 542 EDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLISNIIKLQEDEMVST 601

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
           I+    ++    +  V+ KG           +  + G   + +  ++++      +G   
Sbjct: 602 IIKVREFEKDKDIFFVTRKGVVKKTNLELFASINKAGIKAIGLKDDDELIFAGLTSGTLK 661

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICE--GLTWID 713
           D + +       + FS + +  M R   GV+  + +  D  ++  I +   +  G T + 
Sbjct: 662 DEIFLATREGFAIRFSENDVRSMGRTASGVKGITLRPEDVIVAGAIIYASEDLSGKTILT 721

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +   Y +        L  RGG G    K   ++GK 
Sbjct: 722 ISEEGYGKRTKLEEYRLQSRGGKGITNLKKNTKTGKI 758


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 402/761 (52%), Gaps = 31/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 245 LRARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 305 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 364 IVRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+ 
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 484 -----QRRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 537 QGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 596

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T     S       L   + +G       S      + G   L +   +++  V+
Sbjct: 597 GETIQTIINVKSDDFHDKYLFFTTRQGVVKRTSVSAFGNIRQNGLKALSLRDNDELINVL 656

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTW 711
              G    ++G +    + F    +  M R   GV+  + +      VI    I +    
Sbjct: 657 LTNGQEDIIIGTHLGYSVRFQESAVRNMGRLATGVKGVNLRKNDY--VIGADHIADSRNV 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +           RGG G        ++G    
Sbjct: 715 LTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPLAG 755


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/757 (33%), Positives = 425/757 (56%), Gaps = 32/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  + +   +++ +L Y++S I  RA+PD+RDG KPVHRRI++A+ E G+      KK
Sbjct: 8   EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y ++V+LAQ F  RYPL+ G GNFG+IDGD+AAA RYTE+
Sbjct: 68  SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L+ +D+D VD+R  Y+E   EP V P++ PNLL NG++GIAVGMAT+IP H
Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +     IDNP+I+IE+L++ I GPDFPTGGI+      I ++Y  GRG  R RA
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILEA--RGIRQAYETGRGTIRTRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R+ +EE   G + IVVTEIPYQV K+RL+EKIAEL+  K++  + D+RDES      ++ 
Sbjct: 246 RYEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ ++++  +F  + ME  F + M  L  G  P+++ L  +++ ++ HR+EV+ R
Sbjct: 306 ELRKDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGE-PRILNLKEMIQYYVEHRQEVINR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+++ +     R  IL+GL IA  N+DEII +IRN       +  + SRF+L+E Q +AI
Sbjct: 365 RTTYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSRFNLSEIQANAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  ++++E + +L      + +L   ++  + I  ++ ++++ +     
Sbjct: 425 LDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPERVLSMIKEDLDDIEKRYGD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT    +S+ + +  ++  I+   + + +SNRG+++          K     +SA 
Sbjct: 482 --NRRTE---ISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPLDTYRSQKRGGKGVSAT 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             +  D     L       +L  +  G+ +T  A  +   S +  G  +   ++L   + 
Sbjct: 537 TIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKGMPLVNFLELRPGEK 596

Query: 602 ---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-T 657
              IV A  ++    LL+V+ KG              + G   + +  ++++  V++V T
Sbjct: 597 VTTIVGAREFNREHHLLMVTKKGIIKKTALKAFQNVRKSGLIAVNLREDDELVGVIRVKT 656

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSA 715
           G  V +       ++F   Q+  M R   GV+  +  KD  +  +  ++  EG   +   
Sbjct: 657 GSKVMIANSRGISIMFDEKQVRSMGRTAAGVKAINLSKDDYVVGLDRYR--EGADVLLVT 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        L  RGG G    +   R+GK ++
Sbjct: 715 EKGYGKRTALSEFKLQNRGGKGLKAIEITRRNGKLVA 751



 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 79/202 (39%), Gaps = 13/202 (6%)

Query: 517 KEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E   ++++ +G I+              L A++ +E D L   +   T  ++++ ++ G
Sbjct: 608 REHHLLMVTKKGIIKKTALKAFQNVRKSGLIAVNLREDDELVGVIRVKTGSKVMIANSRG 667

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            +       + S       ++  I+L+ +  +V    Y     +L+V+ KG       SE
Sbjct: 668 ISIMFDEKQVRSMGRTAAGVKA-INLSKDDYVVGLDRYREGADVLLVTEKGYGKRTALSE 726

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK      +   + + +   +    D + ++     ++   ++ I +  R  +
Sbjct: 727 FKLQNRGGKGLKAIEITRRNGKLVAFQIVSKEDELVILTSEGNIIRLEVEDISQQKRYSR 786

Query: 686 GVRLQSY-KDGGISDVICFKIC 706
           GV L    ++  I  V  FKI 
Sbjct: 787 GVLLMRLPEEDRIVGVARFKIE 808


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/757 (31%), Positives = 396/757 (52%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKS
Sbjct: 9   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 69  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN
Sbjct: 129 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+
Sbjct: 189 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAK 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +   ++  
Sbjct: 248 VEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVID 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 308 VRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGA-PKILSLKEILQYYLEHQEEVVRRR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL
Sbjct: 367 TEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAIL 426

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  F      
Sbjct: 427 DLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNKF------ 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T  +V        +  + E++   V +++ G+++                +  + 
Sbjct: 481 GDERRTELQVGDISNIEDEDLIEEEDI-IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 539

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 599

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 600 TAVINIAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVD 659

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 660 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 719 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ +G ++              + A++  EGD L           ++L +  G A T 
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATF 676

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S       ++    L     ++ A   +   ++LV+S KG       SE     
Sbjct: 677 KVSAVRSMGRSAAGVRGA-RLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKG 735

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R G     V+  EK   +  +  V GD  + VV +   ++ F ++ + +  R   GV L 
Sbjct: 736 RGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLI 795

Query: 691 SYKDGGISDVICFKICEGLT 710
                 +  V      E  T
Sbjct: 796 KMDADSV--VATMTKVEKET 813



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKE 518
             N    E    K++F  +     +RT   E                    +  A+++ +
Sbjct: 602 VINIAQREDDLQKDLFFVTRQGTVKRTPVTEFKNIRSNGIKAINLHEGDELINVAIVDDD 661

Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++ ++ G         +RS+   +  +     ++GD L  A   +  D++L++S  G
Sbjct: 662 QNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYLIGAAPLNEDDQVLVISEKG 721

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                PA         G  I+ +     N  +           L+VV+ KG         
Sbjct: 722 YGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVES 781

Query: 631 IIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +    R   G   +K+ ++  +  + KV  +
Sbjct: 782 VSQTGRSAIGVHLIKMDADSVVATMTKVEKE 812


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/721 (35%), Positives = 382/721 (52%), Gaps = 62/721 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +L  ++++ VD+   Y+  +  P V P+K PNLL NG++GIAVGMAT+IP HN+
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+  I+IE L+E+I GPDFPT  I +  R  I E+YR GRG   VRAR 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYVRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E +   G   IVV EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L     P+++ L   L+ ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSQTQMQVSFGINMVAL-HQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+GL IA  NID II +IR+   P                      
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L S ++    I  E+  ++E F  +     RRT   E++        + +IE+E
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDA-----RRT---EITANTADINIEDLIEQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D ++  L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L        G  I  L+ L  ++ I        Y     + + ++ G    
Sbjct: 598 RMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVNVFMATASGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG 684
              +E       G   + ++  +++  V    G D V +     K++ F  D +  M R 
Sbjct: 658 TALTEFSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRT 717

Query: 685 K 685
            
Sbjct: 718 A 718


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/758 (35%), Positives = 442/758 (58%), Gaps = 23/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+++TL+ + ++  ++    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L+ + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+D P+  +++LLE +  PD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        IV+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTEEHGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +  + LM  +F  +D+E  + +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RRE + RR   R+  +  R+ IL+GLL A+LNIDE+I IIR EDKPKPV++ RF 
Sbjct: 356 EWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPVLMERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I+ E D L  E++K++  L S ++    +  EI+E 
Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +++        RR+   E     KA  ++ +I  E +TVV+S++GW R  K H +D+  
Sbjct: 476 ADMYGD-----DRRSPVIERVE-AKALSEKDLIPSESVTVVLSDKGWARVGKGHDIDVEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD  K +    +    + L + G+A+   A +L S R  GE +    +L    + 
Sbjct: 530 LNYRAGDEYKASAKGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + +    LL+ S  G  FI +  ++++  + GK  + V     +   ++V     D
Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
           +   +    ++L+F +  +P++ +GKG ++ S     +        V+          + 
Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  R      +DL  + G+RG  G+ +P+G  R  + +
Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQRVDEAV 747


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/844 (30%), Positives = 411/844 (48%), Gaps = 107/844 (12%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N+   ++ ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E G 
Sbjct: 3   TNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGY 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           +F   ++KSARIVG+V+GK HPHGDQS+YD++VR+ Q F  R PLI GQGNFG++DGD A
Sbjct: 63  EFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEARM + A  +L  +D++ VDF+  Y+E   EP+V P++FPNLL NG  GIAVG
Sbjct: 123 AAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A  A+IDNP ++ E+LLE + GPDFPTGG I+  R  +  ++  G
Sbjct: 183 MATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTIL-GRSGVRAAHLTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R R   E++  G   I+VTE+PYQV K+ ++EKIAEL+  K++  + DIRDES 
Sbjct: 242 RGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V+    R    ++++  +F  + ++T F +NM  L+ G  P+++ L  I++ ++ 
Sbjct: 302 RRGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALN-GGKPELLALRPIIEAFIT 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---- 422
            R EV+ RR+ F +     R   L GL IA  N+D +I +IR    P+       +    
Sbjct: 361 FREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWP 420

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   L+E Q  AIL+LRL  L  LE  ++  EL  +  + 
Sbjct: 421 AMDVEPLIKLIDEPGRMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQI 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E+   +L S  + +  +  E+ E+KE ++       RRTT  E    +     + +I++E
Sbjct: 481 EEYLHILRSRARLFEIMRAELVEMKEAYATP-----RRTTLEE---NEFEHDIEDLIQRE 532

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V ++N G+I+ +   +           + +  ++ D +      +T   +L  S+DG
Sbjct: 533 EMVVTVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDG 592

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGN 622
             Y +    L  G     G+A+  ++ LN  + I T               ++  +  GN
Sbjct: 593 MVYKMKVYRLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGN 652

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEM 681
                 S+       GK  +K+   + +  V   T +   ++  N  K + F++  +   
Sbjct: 653 VRRNRLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVF 712

Query: 682 -SRG-KGVRLQSYKDGG---------------------ISDVICFKICEGLT-------- 710
             R   GVR     +                       +      +   G T        
Sbjct: 713 AGRTSTGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRASGETEGEDDSTL 772

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +    R + +  +     +  RGG G    +   R+G 
Sbjct: 773 DAEPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGT 832

Query: 750 FLSS 753
            +++
Sbjct: 833 VVAA 836



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 87/300 (29%), Gaps = 67/300 (22%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGW 529
           +  +++  +         G+       ++  ++ T    + E E        +  +  G 
Sbjct: 593 MVYKMKVYRLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGN 652

Query: 530 IRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN---L 580
           +R  +             A+   EGD L           +LL +  GKA     G+    
Sbjct: 653 VRRNRLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVF 712

Query: 581 LSGRGHG-EAIQLLID-------------------------------------------L 596
                 G   I+L  D                                           L
Sbjct: 713 AGRTSTGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRASGETEGEDDSTL 772

Query: 597 NHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +    +++A  ++        LL V+S+G        E     R G+    +   E+   
Sbjct: 773 DAEPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGT 832

Query: 653 VVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           VV        D V ++ +  +L+   ++ +    R  +GV L    D G   V   ++ E
Sbjct: 833 VVAAFPIANEDQVMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 407/757 (53%), Gaps = 32/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + +   +   YL Y++S I  RA+PD+RDG KPVHRRI++A+ ++G+      KKS
Sbjct: 7   RVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+ +A  ++  + ++ VDF   ++E   EP V P++FPNLL NG+SGIAVGM+TSIP HN
Sbjct: 127 MSPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI+ PEI+ ++L+  I GPDFPTGG I+  R SI ++Y+ GRG   VRA+
Sbjct: 187 LGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIM-GRGSIYKAYKNGRGKLTVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++      I+V E+PYQV K+RLI+KIA+L+  +++  + DIRDES  D   ++  
Sbjct: 246 TRVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P +++  ++  S ++  F + M  L     P+V+ L  IL+ +L H++EV+ RR
Sbjct: 306 LKREATPKVVLNQLYKHSRLQVTFSVIMIALVDKE-PKVLSLKQILEHYLEHQKEVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + +     R  IL+G  IA  NIDEI+ +I+N    D  +  ++  + L+E Q +AIL
Sbjct: 365 TQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMENYKLSETQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+SL  LE  +I+SE  +L  +     S+L S ++    I  EI  +K  ++     
Sbjct: 425 RMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEEKLLEIIKEEILAIKAKYNDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT+             + +IE+E I V ++N+G+I+          +     +  + 
Sbjct: 482 --RRTSI---MNRATDLELEDLIEEEQIVVTMTNQGYIKRMPLDLYRSQRRGGKGVIGIS 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++      T  + L  +  G+ Y L    +     +  G AI  L++L   + I
Sbjct: 537 TKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARGTAIINLLELEEGEKI 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                   + +   L++ +  G        E       G   + +   +++  V  +   
Sbjct: 597 NAVIPIKEFPADAYLIMATKNGLIKKTALEEY-NTNYTGLIAINLRENDELIGVRVIEAK 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
           +++ +V  N K + FS   +  + R   GV+  + +     +VI   I   G   +    
Sbjct: 656 ENIFLVTRNAKAIHFSEADVRSVGRNSYGVKGINLETE--DEVIDLGIDSAGDELLVITE 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +        +  RGG G L      ++G+  ++
Sbjct: 714 NGYGKRTLISEYRVQNRGGKGILTANLTEKNGQLAAA 750



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-----ALHFKEGDSLKI 553
             E      A +       +   ++ +  G I+       + +     A++ +E D L  
Sbjct: 589 ELEEGEKINAVIPIKEFPADAYLIMATKNGLIKKTALEEYNTNYTGLIAINLRENDELIG 648

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + I L++ + KA      ++ S   +   ++  I+L    +++   +  +  +
Sbjct: 649 VRVIEAKENIFLVTRNAKAIHFSEADVRSVGRNSYGVKG-INLETEDEVIDLGIDSAGDE 707

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD--HVAVVGENRK 669
           LLV++  G       SE     R GK  L   ++ +       ++  D   +  + +   
Sbjct: 708 LLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKNGQLAAARIVDDSLEMMAITQAGI 767

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++  +  +I    R   GV++ +   G    V+   
Sbjct: 768 IIRVAASEISTTGRNTMGVKIINV--GEEDQVVSLA 801



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 2/132 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +RS+  +S  +  ++ +  D +         D +L+++ +G                G+ 
Sbjct: 675 VRSVGRNSYGVKGINLETEDEVIDLGIDSAGDELLVITENGYGKRTLISEYRVQNRGGKG 734

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I        N  +  A + D + +++ ++  G    V  SEI    R   G   + V  E
Sbjct: 735 ILTANLTEKNGQLAAARIVDDSLEMMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEE 794

Query: 648 EKMKLVVKVTGD 659
           +++  + ++  D
Sbjct: 795 DQVVSLARINDD 806


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 401/761 (52%), Gaps = 31/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6   MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RY
Sbjct: 66  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+I
Sbjct: 126 TEARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A    +DNP+++   L+E + GPDFPTG +++  +  I  +Y  G+G   
Sbjct: 186 PPHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RAR  +E+   G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +   
Sbjct: 245 LRARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 305 FIIEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RR+ F     + R  IL+GLLIA  ++DE+I IIRN +     +  ++SRF L+E Q 
Sbjct: 364 IVRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQS 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  E+ ++K  F+ 
Sbjct: 424 QAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                +RRT          +   + +IE+E + + +SN+G+I+          K     +
Sbjct: 484 -----QRRTELMVGEV--LSLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGV 536

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                 + D ++  +   T D +L  +  G+ Y L    +        G  I  L+ L+ 
Sbjct: 537 QGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDD 596

Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            + I T     S       L   + +G       S      + G   L +   +++  V+
Sbjct: 597 GETIQTIINVKSDDFHDKYLFFTTRQGVVKRTSVSAFGNIRQNGLKALSLRDNDELINVL 656

Query: 655 KVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTW 711
              G    ++G +    + F    +  M R   GV+  + +      VI    I +    
Sbjct: 657 LTNGQEDIIIGTHLGYSVRFQESAVRNMGRLATGVKGVNLRKNDY--VIGADHIADNRNV 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    + Y +           RGG G        ++G    
Sbjct: 715 LTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKNGPLAG 755


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 20/212 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            +     ++ + +G ++     + D S      A++F+ E D L  A      D +LL+S
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLIS 687

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+      GR     +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           ++P   R   GV+  S + G    +I      
Sbjct: 807 EVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEH 838


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/783 (30%), Positives = 397/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V E V+   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 10  DNTDYGLMVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDG 69

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 70  GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDD 129

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 130 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 189

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+P+ S E+LL+     I GPDFPTG  I+   + I 
Sbjct: 190 VGMATNIPPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIE 248

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D
Sbjct: 249 QAYRTGRGLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIAD 307

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 308 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 366

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     
Sbjct: 367 FIRHWVNHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTG 426

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 427 LMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVG 486

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 487 DELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRTKAD 538

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 539 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 598

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      YD    L++ +  G       +E  +  + G   ++
Sbjct: 599 GQHVANLLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 658

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V +    L F  +   +  M R   GV+   ++
Sbjct: 659 LMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFR 718

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DG   +++   + +G +    +      + +        L  R G G    +     G  
Sbjct: 719 DG--DELLAMDVVQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSL 776

Query: 751 LSS 753
           + +
Sbjct: 777 VGA 779



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   +  D I+L+S  G +    A +      GR     +Q +   + ++ + + 
Sbjct: 669 DELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTA-GVQGMKFRDGDELLAMD 727

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               DS   LLVV+++G A     SE     R G     V   E     +  V+    D 
Sbjct: 728 VVQGDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGAVIVEESDQ 787

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  + ++ K++  ++ ++    R   GV L   K     ++I     E
Sbjct: 788 IMAIMKSGKVIRSNVAEVKRTGRTTQGVTL--AKPDKNDEIISIARNE 833


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGREARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +G ++     + D S      A++F+ E D L  A      D +LL+S  G+A    A
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSA 697

Query: 578 GN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           G+      GR     +  +     ++     I+ + + +    +   +  G A     SE
Sbjct: 698 GDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSE 756

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G     + +S      +  +V    D +  +  + ++   ++ ++P   R   
Sbjct: 757 YRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTM 816

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV+  S + G    +I      
Sbjct: 817 GVKFVSVRGGDAVSIIAVNPEH 838


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 446/758 (58%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++     + V+ V LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDALEYSLDGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP   P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A + LI+NP+  +  LLE++ GPD+PT   I+  +  I + Y+
Sbjct: 181 VGMATDIPPHNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIRMRAVYDVEQGD-----IVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D + LM+ +F  +D+E  + +N+N++ +   P V  L  IL 
Sbjct: 296 SDHENPVRLVIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNLLVILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +RRE + RR  +R+  +  R+ IL GLL+AYLNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLEYRRETVRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDPKAELMSRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  +IL ++LR L KLEE +I++E D L  E++ ++ +LNS  +    +  EI   
Sbjct: 416 LSDTQAHSILEIKLRQLAKLEEIKIRAEQDELRIEQDYLEKILNSKARMSTLMKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S   KA  ++ ++  E +TVV+S++GW R  K H +D ++
Sbjct: 476 AEQYGD-----DRRSQLVERSE-SKALTEKDLVPSEAVTVVVSDKGWARCAKGHDIDPTS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    A    +   ++ + +DG+A+T  A  L + R  GE +    +L+  +  
Sbjct: 530 LSYKAGDGYLCASKGRSNRPVVFIGSDGRAFTTDAHTLPTARSQGEPLTGRFNLSTGKTF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
           V + + D   + L+VS  G  F+    ++++  + GK  + +    K+ +   +  +  D
Sbjct: 590 VHSIMSDDDAQYLLVSDAGYGFVSSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIEND 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS-------YKDGGISDVICFKICEGLTWI 712
           +   +    ++L+F +  +P +S+GKG ++ +        ++  +S ++C         +
Sbjct: 650 NCLTITSEGRMLVFPVKNLPVLSKGKGNKIINIPSARSKLREEFVS-LLCIIPEGAAITL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R       D+  + G+RG  G+ +P+G  R    
Sbjct: 709 HAGKRKLTLKAADIEHYKGERGRRGNKLPRGLQRVSAV 746


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 391/796 (49%), Gaps = 69/796 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   +   YL+Y++S I  RA+PD+RDG KPVHRR+++AM E+   +   +KKSARI
Sbjct: 10  PVSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARI 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+IDGD AAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  +L  ++++ VDF   Y+  + EP + P+K P LL NG+SGIAVGMAT+IP HN+ E
Sbjct: 130 ISHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L  + NP+ SI++L+EYI  PDFPTGGI +     + E YR GRG   +RA+  +
Sbjct: 190 VIDGCLFCLKNPDCSIDELIEYIPAPDFPTGGI-IYGYSGVREGYRTGRGRVIMRAKTHI 248

Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+  +G    I++ EIPYQV K  L EKIA+L+  KRI  + DIRDES +D   ++    
Sbjct: 249 EDFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELK 308

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    D+++ ++F L+ ++  F +N+  L  G+ P+++ L  ++  +L HRREV+ RR+ 
Sbjct: 309 RGEVADVVLNNLFKLTQLQDTFGMNLVALVNGQ-PKLLNLKELVVYFLQHRREVITRRTV 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------- 416
           F ++        L+GL +A  NIDE I II+    P                        
Sbjct: 368 FELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRV 427

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+ +Q   ILN+ LR L  LE+ +I S  +
Sbjct: 428 DEDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYE 487

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             +     +  +L+  ++    I  E+  +K  ++        R +  E +  +  T  +
Sbjct: 488 AAMDAITDLLDILSKPERITAIIGEELIAIKNEYTIK----DARRSQIEYNAVEFET--E 541

Query: 513 AMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I    + V +SN G+I+S                 A   K+ D ++    A+T D +L
Sbjct: 542 DLITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVL 601

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
             S+ G+ + L    +  G     G  I  L +L  N+ I        +     + + ++
Sbjct: 602 CFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQFIFLATA 661

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678
           KG       S+  +  +     + +  ++ +       G+  + +     K + F    +
Sbjct: 662 KGVVKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDESSV 721

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
               R  +GV     ++G     +     E    + +    Y +    +      RG  G
Sbjct: 722 RATGRSSRGVLGMRLEEGQSIISLIVSKNENAYVLTATENGYGKRTPVVEYTRHGRGTKG 781

Query: 738 SLVPKGFPRSGKFLSS 753
            +  +   R+GK +++
Sbjct: 782 MIAIQTSERNGKVVAA 797



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 493 GRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALH 544
           GR      E+   +K T  L       +    + + +G ++         +      A+ 
Sbjct: 626 GRPIVNLFELQENEKITVVLPIKQFSDDQFIFLATAKGVVKKTALSQYSSTRKMAVIAVT 685

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             E D L  A        I+L S  GKA      ++    G      L + L   Q I++
Sbjct: 686 LDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDESSV-RATGRSSRGVLGMRLEEGQSIIS 744

Query: 605 AFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD 659
             V  +    +L  +  G        E   + R  K  + + + E+    +  V+    D
Sbjct: 745 LIVSKNENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAIQTSERNGKVVAAVLVDESD 804

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            + ++  +  ++   +  I E+ R   GV+L    + 
Sbjct: 805 EIMLITTDGIVVRTKVAPIRELGRATQGVKLIRIDND 841


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/836 (31%), Positives = 399/836 (47%), Gaps = 114/836 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSA
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMA +IP HN+
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI    LALI+N  ++I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+ 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKA 246

Query: 257 CVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            VE   +      I+V E+PYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 247 EVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L   + P+VM L  IL  +L HRREV+ R
Sbjct: 307 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NID II +IR+ D P                     
Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E  +LL  
Sbjct: 426 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 485

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V+E +              E+S +      + +I  
Sbjct: 486 IAELLFILASPERLMEVIRDELLAVREQYGDERPP--------EISASSAEINIEDLITP 537

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++          +      SA   KE + ++  L A+T D IL  ST 
Sbjct: 538 EDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTR 597

Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y L    L        G  I  L+ L   + I        Y     +   ++ G   
Sbjct: 598 GKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPVKEYADDKYVFFATADGTVK 657

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI-------- 675
               S        G   + +   +++  V    G + + +  +  K++ F+         
Sbjct: 658 KTSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPMQP 717

Query: 676 -----------DQ-----------------------------IPEMSRGK-GVRLQSYKD 694
                      D+                             +  M R   GVR     +
Sbjct: 718 MLMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLN 777

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           G     +     EG   + +    Y +           RG  G    K     GK 
Sbjct: 778 GDKVVSLIVPRGEGA-ILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDE-DGKV 831



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 56/251 (22%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +      +  G ++     +        + A++ KEGD L   
Sbjct: 627 EEGERITAILPVKEYADDKYVFFATADGTVKKTSLSAFSRPLSSGIRAINLKEGDELIGV 686

Query: 555 LHAHTTDRILLLSTDGKAYT--------------------------LPAGNLLSGRGHGE 588
                ++ I+L S  GK                             + AGN   G  +GE
Sbjct: 687 DITDGSNEIMLFSDAGKVVRFNEGSAAPMQPMLMSSDDVDGDDESVIDAGNDDDGSDNGE 746

Query: 589 AIQLL---------------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             +                       I L +   +V+  V      +L  +  G      
Sbjct: 747 GSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKGTA 806

Query: 628 ESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
            +E    +R  +G   +KV  + K+ +      D + ++     L+   + ++  + R  
Sbjct: 807 LTEYPTKSRGTQGVRSIKVDEDGKVSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNT 866

Query: 686 -GVRLQSYKDG 695
            GVRL    + 
Sbjct: 867 GGVRLIRTGED 877


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/770 (34%), Positives = 397/770 (51%), Gaps = 87/770 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 484 IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 536 EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 596 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 656 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 715

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
                              +  M R   GVR     DG     +     E
Sbjct: 716 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTE 765


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/752 (31%), Positives = 400/752 (53%), Gaps = 36/752 (4%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +E  Y+ YA+S I  RA+PD+RDG KPV RR++++M E+        +K ARIVG+ +GK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y +LV +AQ +  RYPL+ G GNFG+ DGD AAA RYTEAR+++++  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V+F   ++E + EP V PS++PNLL NGTSGIAVGMAT+IP HN+ E   A + 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 206 LIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +IDN      + +IE+++E I GPDFPTG  I+  R+ I ++YR GRG  + RA   +E 
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATIL-GRKDIEQAYRTGRGKIKTRAVSEIET 239

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +  G   I+VTE+PY V K++L+EKIA L+  K++  + D+RDES ++   V+    R  
Sbjct: 240 MDNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++  ++  + ++  F + M  L  G  P+V+ L  +L E+L H+++V+ RR+ F +
Sbjct: 300 NANVILNQLYKHTQLQDSFGVIMLALVDGE-PKVLNLLQMLDEYLKHQKDVVTRRTKFEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437
              + R  I+KGLLIA  NIDE+I IIR        K  ++ RF L++ Q  AI+++RLR
Sbjct: 359 NKAEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIERFGLSDAQSQAIVDMRLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  L    +++E  +L+A+ + + S+L    +    I  EI  +++ F      G  R 
Sbjct: 419 QLTGLAREDLEAEYADLMAKIDYLKSILADENKLLTVIKEEIEVIRDKF------GDERR 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGD 549
           T   ++  D +   + +I +E   V ++N G+I+                +  +   + D
Sbjct: 473 TKIGINVGDLSD--EDLIPEEDTVVAMTNLGYIKRMTVDNFKSQNRGGKGIKGMQTIDKD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI---VT 604
            +K      T D IL L+  G+ Y L    +        G AI  L+ L   + I   V 
Sbjct: 531 FMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIVNLLQLQPGEKISAMVQ 590

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAV 663
              ++    L++ + KG              + G   + +  ++++  V +    D++ +
Sbjct: 591 MKEFEEDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLREDDELIDVTISDNNDNIML 650

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNR 721
           + +  + + F    + E  R   GVR          +VI  ++  +G   +  +     +
Sbjct: 651 ITKKGQGIKFRETDVRETGRSAMGVRGIELNQD--DEVISMQLESQGECVLIVSANGMGK 708

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   L  RGG G    K   ++G+ + +
Sbjct: 709 RTPFTDFKLQNRGGKGVKCYKISDKTGEVVGA 740



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 91/237 (38%), Gaps = 13/237 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +      A +Q    E++   ++ + +G I+     +        + A+  +E D L   
Sbjct: 580 QPGEKISAMVQMKEFEEDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLREDDELIDV 639

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
             +   D I+L++  G+       ++         ++  I+LN + ++++  +      +
Sbjct: 640 TISDNNDNIMLITKKGQGIKFRETDVRETGRSAMGVRG-IELNQDDEVISMQLESQGECV 698

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           L+VS+ G       ++     R GK      +   + E +       G+ + ++     +
Sbjct: 699 LIVSANGMGKRTPFTDFKLQNRGGKGVKCYKISDKTGEVVGAKAVNDGNEIMMITNEGIV 758

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-KICEGLTWIDSAGRSYNRSEND 725
           +   +D I  + R   GV+L +  D     V    K+ E +T  D+   +    EN+
Sbjct: 759 IRMFVDDISILGRVTLGVKLMNTGDKDDIVVASITKVKESVTEADALEAARLSEENE 815


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/757 (32%), Positives = 403/757 (53%), Gaps = 32/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ + +   +   YL YA+S I  RA+PD+RDG KPVHRRI++A++++G+      KKS
Sbjct: 7   RVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VYD++VR+AQ F  RYPLI G GNFG++DGDSAAA RYTEAR
Sbjct: 67  ARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+ +   +L  ++++ VDF   ++E   EP V P++FPNLL NG++GIAVGM+TSIP HN
Sbjct: 127 MSSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI  PEI+ ++L+  I GPDFPTGG I+  R SI ++Y+ GRG   VRA+
Sbjct: 187 LGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIM-GRGSIYKAYKTGRGKLTVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++      I+V E+P+QV K+RLI+KIA L+  ++I  + DIRDES  D   ++  
Sbjct: 246 TRIEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  S ++  F   M  L     P+V+ L  IL+ +L H+++V+ RR
Sbjct: 306 LKREATPEVVLNQLYKHSRLQITFSTIMIALVNNE-PKVLSLKEILEHYLEHQKKVITRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + +     R  IL+G  IA  NIDEI+ +I+     D  +  ++  + L+E Q +AIL
Sbjct: 365 TKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALMDDYELSEIQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+SL  LE  +I +E D L A+  +  S+L    +  N +  EI E+K+ ++     
Sbjct: 425 RMRLQSLTGLERNKIDTEYDELQAKITRYRSILADEDKLLNIVKKEILEIKDKYNDK--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   +     +            I + ++++G+I+          +     +  + 
Sbjct: 482 --RRTKIMDKVTDLEIEDLIEEE---QIVITMTHQGYIKRMALDLYRSQRRGGKGVIGIS 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            KE D ++      T  + L  S  G+ Y L    +     +  G AI  L++L   + I
Sbjct: 537 TKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARGTAIINLLELKEEERI 596

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +     L++ +  G        +       G   + +   +++  V  +  D
Sbjct: 597 TAVIPVKEFPEDAYLIMATKNGLIKKTSL-DAYDTNYTGLIGINLRENDELIGVRIIDED 655

Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             + +V +N K + F+   +  + R   GVR     ++  + D+      E L  I   G
Sbjct: 656 ENIILVSKNAKAIHFNESDVRSVGRNSYGVRGIRLSEEDYVIDMGIDSAGEHLLVITENG 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +        +  RGG G L      ++G+  ++
Sbjct: 716 --YGKKTPLTEYRIQNRGGKGILTANITEKNGQLAAA 750



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-----ALHFKEGDSLKIALHA 557
                A +      ++   ++ +  G I+     + D +      ++ +E D L      
Sbjct: 593 EERITAVIPVKEFPEDAYLIMATKNGLIKKTSLDAYDTNYTGLIGINLRENDELIGVRII 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L+S + KA      ++ S   +   ++  I L+    ++   +  +   LLV+
Sbjct: 653 DEDENIILVSKNAKAIHFNESDVRSVGRNSYGVRG-IRLSEEDYVIDMGIDSAGEHLLVI 711

Query: 618 SSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKV--TGDHVAVVGENRKLLIF 673
           +  G       +E     R GK  L   ++ +       K+      + V+     ++  
Sbjct: 712 TENGYGKKTPLTEYRIQNRGGKGILTANITEKNGQLAAAKIVDANSEMMVITHEGIIIRV 771

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
             ++I    R   GV++ + ++     V   +I E     +        +E D L  L
Sbjct: 772 QAEEISTTGRNTIGVKIINVEEDD-KVVSLARINEDEIVDELEELDKIETETDDLDKL 828


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/761 (35%), Positives = 425/761 (55%), Gaps = 33/761 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+    A+
Sbjct: 8   LNQDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAY 67

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYT 127

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT+IP
Sbjct: 128 EARMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H   EI +A + LIDNP+ S++++L+++ GPDFPTGGI +  +  I E+Y  GRG  ++
Sbjct: 188 PHRTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGI-IYGKSGIREAYESGRGRIKI 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  +   V
Sbjct: 247 RAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRV 305

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++  +F  + ME+ F + +  +     P+V  L  +L  +L+HR+ V+
Sbjct: 306 VIELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKE-PKVFTLLELLDLFLSHRKSVV 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
            RR+ F ++    R  IL+GL IA  NID I+A+IR    P   K  ++++FSL+E Q  
Sbjct: 365 IRRTIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQFSLSEIQAQ 424

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +I++E   LL E E + ++L S       I  E+ E+KE FS  
Sbjct: 425 AILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSESLLNGIIKEELLEIKEKFST- 483

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
                +R T  E     ++   + +I  EP+ V +S+RG+++ +   + +          
Sbjct: 484 -----KRLTTIE--EDYESIDVEDLIPNEPVVVTMSHRGYVKRVPVRTYEKQNRGGKGKI 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           + +  + D ++    + T D IL ++  G+ Y L    +   S    G+A+  LI+L  +
Sbjct: 537 SANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIGKAVVNLINLAPD 596

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I+       ++S   L   +  G       SE       G   + +   + +     +
Sbjct: 597 EKIMATITTKDFNSNKSLAFFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDALVTAKII 656

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTW 711
           + D   + VV      + F +D + E+ R  +GV    +K     +         E    
Sbjct: 657 SSDIKEILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKMPKDYVIGATVVA-SENEEI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  + +   +        +  RGG G +  K  P++GK + 
Sbjct: 716 LSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTPKTGKLVG 756



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 13/191 (6%)

Query: 523 VISNRGWIRSLK------SHSVDLSALHFKEGDSLKIA-LHAHTTDRILLLSTDGKAYTL 575
             +  G I+           SV + A++  E D+L  A + +     IL+++ +G     
Sbjct: 616 FFTKNGIIKRTNLSEFKNIRSVGVRAINLDENDALVTAKIISSDIKEILVVTYEGMCVRF 675

Query: 576 PAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
              N+         +  +   +  +  I    V     ++L VS KG     E +E    
Sbjct: 676 GVDNVREIGRVARGVTAIKFKMPKDYVIGATVVASENEEILSVSEKGIGKRTEVNEYRIT 735

Query: 635 TRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R GK  + +    K   +  +V V  +  + V+  + K++   +  I +  R   GV +
Sbjct: 736 NRGGKGVIAMKLTPKTGKLVGIVNVDENMDLMVLTSSGKMIRVDMQSIRKAGRATSGVII 795

Query: 690 QSYKDGGISDV 700
            +  D  +  +
Sbjct: 796 VNVDDDKVVSI 806


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/773 (34%), Positives = 429/773 (55%), Gaps = 37/773 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ I  +N   E N+    +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ AM+
Sbjct: 28  VEEIKETNMTNEVNIY---IEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMN 84

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMG+     FKKSARIVGEV+GK HPHGD SVY+++VRLAQ F  RY L+ G GNFG++D
Sbjct: 85  EMGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVD 144

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARM ++   +L  +D++ +DFR  ++E   EP V P+K PNLL NG++G
Sbjct: 145 GDEAAAMRYTEARMAKITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTG 204

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ EIC+  +ALIDN EIS+++L+ YI GPDFPTGGI +  ++ I E+
Sbjct: 205 IAVGMATNIPPHNLSEICDGIVALIDNREISVDELINYIKGPDFPTGGI-INGKQGIYEA 263

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  +V  +  +E    G   I+VTE+PYQV K+RLIEKIAEL+  K++  + D+R
Sbjct: 264 YRTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLR 323

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   ++    +  + +L++ S++  +D++  F + M  L     P+V+ L  IL+
Sbjct: 324 DESDREGIRIVIELKKGEESELILNSLYKFTDLQNTFGIIMLALVNNA-PRVLNLKQILE 382

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +L HR  V+ RR  F +   + R  IL+G  IA  NIDE+I IIR   + ++ +  +++
Sbjct: 383 NYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLIA 442

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F  +E Q  AIL++RL+ L  LE  +I+ E   L+   E++ S+L    +++  I  E+
Sbjct: 443 SFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEV 502

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++KE      D G +R T  E+  A      + +I+ E + V ++ +G+++        
Sbjct: 503 IKLKE------DFGDKRRT--EIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYH 554

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
             +   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  LI L+ ++ + T      ++    +  ++  G     + +      + G   L +  
Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRD 674

Query: 647 EEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           E+++K     +G   D + +   N   + F  + +  M R   GV+  + +D        
Sbjct: 675 EDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVMGRTAAGVKGITLRDKDYVVAAV 734

Query: 703 F----KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                KI E L+ +      Y +        +  RGG G +  K   ++GK +
Sbjct: 735 IINPEKISEELSVMTITEEGYGKRTALSEYKVQSRGGKGIINLKINEKTGKIV 787



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 24/215 (11%)

Query: 514 MIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
             EK+     I+  G ++          +   + AL  ++ D LK A     +++  +  
Sbjct: 635 EFEKDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRDEDELKFAGLTSGSEKDEIFI 694

Query: 568 TDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVS 618
                 ++        ++     G      I L     +V A + +         ++ ++
Sbjct: 695 ATRNGISIRFCEEDVRVMGRTAAGVKG---ITLRDKDYVVAAVIINPEKISEELSVMTIT 751

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFS 674
            +G       SE    +R GK  + +   EK   +V V        + ++     L+   
Sbjct: 752 EEGYGKRTALSEYKVQSRGGKGIINLKINEKTGKIVDVKIVDDKTEIMLITSEGTLIRTK 811

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           +D +  + R   GVR+   ++         KI E 
Sbjct: 812 VDTVSVIGRATSGVRIMKVRNEE-KVASAVKIAEN 845


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/763 (33%), Positives = 423/763 (55%), Gaps = 33/763 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AMS++G+ +  +
Sbjct: 1   MVIGNTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F  RY L+ GQGNFG++DGD  AA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D+D V+F   +++   EP V PS+ P LL NG SGIAVGMAT+I
Sbjct: 121 TEARLTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNPE  +E L++++ GPDFPTGG+I+  R+ I  +Y  G G   
Sbjct: 181 PPHNLTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLIL-GRDGIKSAYATGHGKVV 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VRAR  V +V        I+++E+PYQV K+ L+++IA L   ++I  + ++RDES    
Sbjct: 240 VRARAHVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  +P  ++ +++  ++++T F +NM  L     P V+ L   L  ++A R+
Sbjct: 300 LRVVIELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNN-RPVVLNLKEALNHYVAFRQ 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           E++ RRS F ++A   R  IL+GL IA  N+D II +IR   N D  +  ++SRF L++ 
Sbjct: 359 EIITRRSKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQL 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+L+LR L  LE  +I  E  ++L +   ++ LL + ++  + +  ++ EVK  +
Sbjct: 419 QAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
             +      R T  + S+      ++ +I  + + V ++ RG+I+               
Sbjct: 479 GDA------RRTEIQ-SQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGR 531

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLID 595
             S +  +E DS++  + A T D +LL +  GK +++    +         G AI  L+ 
Sbjct: 532 GKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVP 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  N+ I +      +D    L++ +S G     + S+  A    G   + +   +++  
Sbjct: 592 LAENERITSMIAVSRFDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIG 651

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGL 709
            V    D  + ++  N + + F +  +    R   GVR  + + D  ++ +   +    +
Sbjct: 652 AVIAGADENIILITHNGRSIHFPVADLRVSQRASGGVRGITLEGDDRVAGLDVARPGHFV 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + G  Y +        L +R G G L  K   ++GK  +
Sbjct: 712 LVVTTGG--YGKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAA 752


>gi|332638147|ref|ZP_08417010.1| DNA gyrase subunit A [Weissella cibaria KACC 11862]
          Length = 865

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/773 (31%), Positives = 405/773 (52%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  +NS       +K   L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAEEEQNNS------RIKPAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYG 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 55  MNELGVTPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++++A  +L+ +++D +DF D Y+  D EPVV P++FPNLL NG 
Sbjct: 115 IDGDPAAAMRYTEARLSKIATEMLRDINKDTIDFADNYDGTDREPVVLPARFPNLLVNGA 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+  A   L++NP+++  +L+E + GPDFPTG I++  +  I 
Sbjct: 175 NGIAVGMATNIPPHNLGEVISAIHMLMNNPDVTTAELMEAVPGPDFPTGAIVM-GKSGIR 233

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VRA+  +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  
Sbjct: 234 KAYETGKGVVTVRAKVEIETEKSGKERIIVTELPYMVNKAKLIERIAELGREKRIEGITA 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DES +    +     R +   +++ +++  + M+T F  NM  +  G  P+++ L  +
Sbjct: 294 VNDESDQTGYRIAIDIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDG-RPKLLGLKAM 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H++ V+ RR+ F ++  + R  IL+GL IA  +ID II+IIR  +     K  +
Sbjct: 353 LVAYLEHQQIVVRRRTEFELRKAEARAHILEGLRIALDHIDAIISIIRGSETSEIAKNRL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ ++L++ Q  AIL++RL  L  LE  +I+ E   L+        +L   ++    I  
Sbjct: 413 MTDYALSDKQAQAILDMRLVRLTGLERGKIEDEYQGLMTAIADYKDILAKPERIDEIIYT 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E++E +      G  R T  ++     +   + +IE+E I V +++ G+I+      
Sbjct: 473 ELLEIQEKY------GDERRTELQIGDV-TSIEDEDLIEEEDIIVSLTSAGYIKRMAQTE 525

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D +   +   T D +L  +  GK Y +    +        G
Sbjct: 526 FRAQNRGGRGVQGMGVNDDDFIDQLIGTSTHDTLLFFTNAGKVYKMKGYEIPEYGRSAKG 585

Query: 588 EAIQLLIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             +  L+ +   + + T         +S   L   +  G       S+       G   +
Sbjct: 586 IPVVNLLGIEAGESVQTVINVRGEASESEDFLFFTTRYGKVKKTPVSDFSNIRTHGLKAI 645

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            ++ ++++  V+   G    ++G +    + F+ D +  M R   GVR  + +D     V
Sbjct: 646 TLNDDDELINVMITDGTENLLIGTHGGYAVSFNADAVRSMGRSAAGVRGITLRDD--DFV 703

Query: 701 ICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I  +I  +  + +    + Y +        +  RGG G    +   ++G    
Sbjct: 704 IGAEILKDDASVLVITEKGYGKQTPVDQYPIKGRGGKGIKTAQITEKNGPLAG 756



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 12/209 (5%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
              E E      +  G ++              L A+   + D L   +    T+ +L+ 
Sbjct: 609 EASESEDFLFFTTRYGKVKKTPVSDFSNIRTHGLKAITLNDDDELINVMITDGTENLLIG 668

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A +  A  + S       ++  I L  +  ++ A +      +LV++ KG     
Sbjct: 669 THGGYAVSFNADAVRSMGRSAAGVRG-ITLRDDDFVIGAEILKDDASVLVITEKGYGKQT 727

Query: 627 EESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              +     R GK      +   +     L V    + + +      ++ F++D + E  
Sbjct: 728 PVDQYPIKGRGGKGIKTAQITEKNGPLAGLAVVDGSEDIMLTTNKGVMIRFTVDSVSETG 787

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLT 710
           R   GVR+    D  I         E  T
Sbjct: 788 RATQGVRVIRLDDDAIVATFAKVEHEEDT 816


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/762 (30%), Positives = 385/762 (50%), Gaps = 36/762 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+I+ M + G     AF K 
Sbjct: 31  NIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDRAFNKC 90

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 91  ARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPRYTETK 150

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+ +  EP V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 151 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 210

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+       + NP  + E+    L+E I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 211 LREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATIL-GTKGIEDAYRTGRGSIT 269

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+  G  C+VVTE+PYQ     L  KIA+LI   ++  + D+RDE S    +
Sbjct: 270 MRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQ 328

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  F  NM  +  G VP+ + LD  ++ W+ H+ +
Sbjct: 329 RLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFIRHWVNHQMD 387

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR     D+ +  ++    + E Q
Sbjct: 388 VIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLDIDEAQ 447

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AILN++LR L  LE  +I+   D L     + ++++ S  +Q   I+ E+ E+   + 
Sbjct: 448 AQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAIIASEDRQREIISEELGEIVNRYG 507

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT        D +   + +I +E + V I+  G+I+                
Sbjct: 508 D-----DRRTEILRGFNGDMSM--EDLIPEEEVVVTITRGGYIKRTRSDQYRSQHRGGKG 560

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
           +     +  D ++      T   IL  +  G+ Y      L        G+ +  L++  
Sbjct: 561 IRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEAGRDAKGQHLANLLEFQ 620

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        Y+    L++ +  G       S+   N   G   + +  ++++    
Sbjct: 621 PDEHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAGLIAINLRDDDEVVSAF 680

Query: 655 KVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            V+  D + ++  N   L F    + +  M R   GV    ++DG         I E   
Sbjct: 681 LVSPEDDILLISRNGMSLRFHANNESLRPMGRSTSGVTGMKFRDGDELISAQVVIPESFV 740

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           ++ + G  Y +  +     +  R G G  V K     G  + 
Sbjct: 741 FVVTEG-GYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVG 781



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +     E     V+ +  G ++  +    D +      A++ ++ D +  A
Sbjct: 620 QPDEHIAQVMDLKTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAGLIAINLRDDDEVVSA 679

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ILL+S +G +    A N  S R  G +   +  +      ++++A V     
Sbjct: 680 FLVSPEDDILLISRNGMSLRFHANN-ESLRPMGRSTSGVTGMKFRDGDELISAQVVIPES 738

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE--EKMKLVVKVTGDHVAVVGENR 668
            + VV+  G A            R G      K+       +  ++    D V VV ++ 
Sbjct: 739 FVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSG 798

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           K++  ++ ++P   R   GV     K G    +I     + 
Sbjct: 799 KVVRTNVSEVPAKGRDTMGVIF--AKPGKGDSIIGIARNQD 837


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/849 (30%), Positives = 417/849 (49%), Gaps = 113/849 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+      ++  +++   + + YL YA+S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MSNTPLPPASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D    +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++DGD 
Sbjct: 61  YDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE +L  +D+D +DF+ +Y++   EP V P++FPNLL NG  GIAV
Sbjct: 121 PAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+ +A  A IDNP++++++L+E++ GPDFPTGG+I+  R     + + 
Sbjct: 181 GMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLIL-GRSGSRAALQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+   EEV +    I+ TEIPYQV K++L+E+I E++  K I  + D+RDES
Sbjct: 240 GRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   PD+++  +F  + ++T F +NM  L+ G  P++M L  ++  ++
Sbjct: 300 DRDGVRVVIELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALN-GGRPELMNLLDVITAFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-- 420
             R +V+ RR+ F +     R   L GL +A  N+D +I +IR+   P   +  M++R  
Sbjct: 359 RFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNREW 418

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E Q  AIL+LRL  L  LE  +I +EL ++  
Sbjct: 419 PVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDVTD 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +     + L +  +    +  E+ E+KE F        RRT   E+   +     + +I+
Sbjct: 479 QIADFLATLANRPKLMGILRDELVEMKERFGTP-----RRT---EIQDLEFEADIEDLIQ 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S  G+++          K      + +  K  D++     A+T   +LL S 
Sbjct: 531 REDMVVTVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSN 590

Query: 569 DGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G  Y L    L  G  +  G+A   L+ L   + I T               ++  +SK
Sbjct: 591 RGMVYKLKVYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSK 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           GN      S+       G   +K+    E++  V   +  D + +     K + F +D +
Sbjct: 651 GNVRRNRMSDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDV 710

Query: 679 PEM-SRG-KGVRLQSYKDGGISDVICFKI-------------------CEGLT------- 710
                R   GVR     DG   +V+   I                    EGL        
Sbjct: 711 RVFAGRTSTGVRGIKLADG--DEVVSLSILAHVDATPEERAAFFKMKRDEGLEMEGEAAP 768

Query: 711 --------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                      +  + R Y +  +        RGG G    +  
Sbjct: 769 EADEVPTDSVTLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMG 828

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 829 ERNGSIVAA 837



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 86/315 (27%), Gaps = 69/315 (21%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGW 529
           +  +++  +         G+       +   +  T    + E E        V  +++G 
Sbjct: 593 MVYKLKVYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGN 652

Query: 530 IRSLKSHSV------DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +R  +           L A+  +E G+ L        TD ILL +  GK    P  ++  
Sbjct: 653 VRRNRMSDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRV 712

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVY---------------------------------- 608
             G        I L    ++V+  +                                   
Sbjct: 713 FAGRTSTGVRGIKLADGDEVVSLSILAHVDATPEERAAFFKMKRDEGLEMEGEAAPEADE 772

Query: 609 -----------------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
                                 +L VS +G        E     R G+    +   E+  
Sbjct: 773 VPTDSVTLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNG 832

Query: 650 -MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
            +     V  +H V +V    +++   +  +    R   GV L     D  +  V     
Sbjct: 833 SIVAAFPVESNHQVMMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAE 892

Query: 706 CEGLTWIDSAGRSYN 720
            +G T  D+   S  
Sbjct: 893 EDGETGADAGAESGG 907


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +G ++     + D S      A++F+ E D L  A      D +LL+S  G+A    A
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSA 697

Query: 578 GN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           G+      GR     +  +     ++     I+ + + +    +   +  G A     SE
Sbjct: 698 GDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSE 756

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G     + +S      +  +V    D +  +  + ++   ++ ++P   R   
Sbjct: 757 YRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTM 816

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV+  S + G    +I      
Sbjct: 817 GVKFVSVRGGDAVSIIAVNPEH 838


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN +E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLELLLGSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHE-SRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L +    K      +      
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/746 (33%), Positives = 405/746 (54%), Gaps = 30/746 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+  ++   +   YL YA+S I  RA+PD RDG KPV  RI++ M +MG+     FKK A
Sbjct: 6   VRTRNITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE++GK+HPHGD +VYD+LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTEAR+
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L  ++++ VDFRD ++ +  EPVV P++ PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+C+A   LIDNP+ ++E L++ + GPDFPT G+I+   E I+ +Y  GRG   +RA+ 
Sbjct: 186 SEVCDAITHLIDNPDATVEDLVKILPGPDFPTAGMIL-GTEGIMNAYSTGRGHIIIRAKA 244

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  RG++ IVVTE+PYQV K+RL E+IAEL   ++I  + D+RDES      ++   
Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIIL 304

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFRR 375
            +   P  ++ +++  + M+T F +NM  L   GR P+++ L  +L+E++ HRREV+ RR
Sbjct: 305 KQDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL IA  ++D +I  IRN    D  +  +++ F+L+E Q +AIL
Sbjct: 365 TEFDLDKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMNGFALSEAQANAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L  L  LE  +I+ E   ++    +++ +L + ++  + I  ++ ++K  +  +   
Sbjct: 425 EMQLGRLAALERQRIEEEYREVIRLIGELEDILANPRKILHLIKQDLADLKAKYGDA--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
             RRT       A+       +I    + + +++RG+++                     
Sbjct: 482 --RRTRII--PEANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVYRTQRRGGRGIRGAT 537

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            +E D ++  L A+T D +L  +  GK Y + A  L   S    G  +  LI L   + +
Sbjct: 538 TREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQV 597

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            +      ++    L++ + +G        E       G   + +   +++  V    G 
Sbjct: 598 TSVLAVPDFEKAEYLIMATVRGKIKRTSIREYSQVRSNGLIAIGLEEGDELGWVAMTQGH 657

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716
           + V +     + + F  +++  M R   GV   +  +G    V+   +  E    +    
Sbjct: 658 EDVLLTTARGQTIRFRQEEVRPMGRPATGVIGIALAEG--DRVVSMDLAQENAALLVVTA 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
             Y +  +     L  R   G +  +
Sbjct: 716 HGYGKRTDLGEYPLKGRATGGVITIR 741



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      + L     EK    ++ + RG I+              L A+  +EGD L   
Sbjct: 592 EPGEQVTSVLAVPDFEKAEYLIMATVRGKIKRTSIREYSQVRSNGLIAIGLEEGDELGWV 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFVYDSTC 612
                 + +LL +  G+        +   R  G     +I   L     +V+  +     
Sbjct: 652 AMTQGHEDVLLTTARGQTIRFRQEEV---RPMGRPATGVIGIALAEGDRVVSMDLAQENA 708

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRK 669
            LLVV++ G     +  E     R   G   +++   +++ +   V  + +  ++ E+  
Sbjct: 709 ALLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVAVAHVVRENSLLTIITESGM 768

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           ++      I    R  +GV + +         +C +  +
Sbjct: 769 VMRTEASGISMFGRNTQGVTIVNLTSNDRVAALCVEAPD 807


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
 gi|332674409|gb|AEE71225.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 891

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +G ++     + D S      A++F+ E D L  A      D +LL+S  G+A    A
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSA 697

Query: 578 GN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           G+      GR     +  +     ++     I+ + + +    +   +  G A     SE
Sbjct: 698 GDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSE 756

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G     + +S      +  +V    D +  +  + ++   ++ ++P   R   
Sbjct: 757 YRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTM 816

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV+  S + G    +I      
Sbjct: 817 GVKFVSVRGGDAVSIIAVNPEH 838


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/698 (50%), Positives = 482/698 (69%), Gaps = 33/698 (4%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE 
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+G++E+AVDFR+ Y+   +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ +A
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            + LI  P+   + LL+Y+ GPDFPTGGIIVE  E+I  +YR G+GGFR+R RW  E++G
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           RG+W IV+TEIPYQVQKS+LIEKIAELI  K+IP+L D+RDESA+D+R+++ P+++++DP
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVDP 240

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           ++LM  ++  SD+E RF LNMNVL  G  P+V  +  +L+ +L HRREVL RRS+ RM+ 
Sbjct: 241 EVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRMEK 300

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMVS 419
           ID R+E+L+G ++A+LN+D +I IIR ++ PK                       P   +
Sbjct: 301 IDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPST 360

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             +L+E Q DAILN+RLRSLR+LEE ++  E   L+ E+  ++ LL +   QW+ I  ++
Sbjct: 361 ENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQWDTIIDQL 420

Query: 480 REVKEIFSKS-----TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           RE K+ F K       ++GRRRT+F E    ++  L +AMI++EPITVV S  GWIR++ 
Sbjct: 421 RETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMIDREPITVVCSQMGWIRAMT 479

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H      L FK+GD  +   HA TTDR+L+  ++G+ YT+ A  L  GRG GE ++L++
Sbjct: 480 GHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRLMV 539

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL +   IV   ++ +  KLLV SS G+ FIV E +++A TR GK  L V  + K  +  
Sbjct: 540 DLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRSGKQVLNVRGDAKAMICA 599

Query: 655 KVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
            VTG  D VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F    GL+W 
Sbjct: 600 PVTGDADAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSWQ 659

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           D AGR   R+E+DL  W GKR   G + P+GFPR  +F
Sbjct: 660 DPAGR--TRTESDLTEWTGKRATAGRMAPRGFPRDNRF 695


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/838 (30%), Positives = 396/838 (47%), Gaps = 112/838 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+++  E G      + KS
Sbjct: 15  DIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIG  HPHGDQS+YD+LVR+AQ F  R  LI GQGNFG++DGD  AA RYTE+R
Sbjct: 75  ARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDF   Y+E   EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALID+P ++IE+L E + GPDFPTGG+I+  R    ++Y  GRG   +RA+
Sbjct: 195 LGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMIL-GRAGTRQAYATGRGSVIMRAK 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  + D+RDES      ++  
Sbjct: 254 SHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRSGMRIVVE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + +++ F  NM  L+ G  P++M L  +L+ ++  R EV+ RR
Sbjct: 314 IKRDAMADVVLNQLYRFTPLQSSFGCNMVALN-GGRPELMNLKDLLQAFVDFREEVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413
           + F +     R  +L GL IA  NIDE+I +IR    P                      
Sbjct: 373 TKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGRDWPAHDIAPLIA 432

Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                  +      + L+E Q  AIL+LRL+ L  L   ++  EL  L  E      +L 
Sbjct: 433 LVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTLADEIADYLDILR 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+ EV+E F+             E+   D +   + +I +E + V +S+
Sbjct: 493 SRARIQGIVKGELAEVREQFATPRK--------TEIVDFDGSVEDEDLIAREDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++          +      S +  ++ D +     A+T   +L  S+ G+AY     
Sbjct: 545 AGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVW 604

Query: 579 NLLSG--RGHGEAIQLLIDL-NHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
            L        G+A+  ++ L + ++ I T               ++  +++GN    + S
Sbjct: 605 RLPMAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRRNKLS 664

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPE-MSR-GKG 686
           +     R GK  +K+   + +  V     D   ++     + + F ++ +     R   G
Sbjct: 665 DFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDSTG 724

Query: 687 VRLQSYKDGGISDVICFKI----------------------------------------- 705
           VR      G    VI   I                                         
Sbjct: 725 VRGILL--GKDDKVISMTILNAFDATAEERAGYLKMRRAVTGESEENGDAEAEDGAEAAA 782

Query: 706 ----------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                           +  + R + +  +        RGG G    +   R+G  ++S
Sbjct: 783 ISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARNGSLVAS 840



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 62/242 (25%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + RG +R  K             A+    GD +           +LL +  G+   
Sbjct: 649 VMFATARGNVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIR 708

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------------------------ 610
            P  ++   +G        I L  +  +++  + ++                        
Sbjct: 709 FPVEDVRVFKGRDSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLKMRRAVTGESEE 768

Query: 611 --------------------------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                                        +L +S +G        E   + R GK    +
Sbjct: 769 NGDAEAEDGAEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAM 828

Query: 645 SSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR-LQSYKDGGIS 698
               +   +     V   D + +V +  +L+   +D I  + R  +GV    + KD  + 
Sbjct: 829 RVNARNGSLVASFPVEASDQIMLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVV 888

Query: 699 DV 700
            V
Sbjct: 889 SV 890


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 402/759 (52%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K + L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    A K
Sbjct: 6   KENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+ +   L+E I GPDFPTGG+++  +  I ++Y  G+G   VR
Sbjct: 186 HNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D   V+
Sbjct: 245 AKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ ++T F  NM  +  G VP+V+ L  IL+E+L H+  V+ 
Sbjct: 305 IDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEIVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+++  +  + R  IL+GL IA  +IDEII IIR     D  K  ++  + L+E Q  A
Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIETYGLSEKQSQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I++E   L+A    +  +L + ++    I  E+ EV+E F  + 
Sbjct: 424 ILDMRMVRLTGLERDKIEAEYTELMALIADMADILANPERVHTIIETELLEVQERFGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT          +   + +IE+E I + ++++G+I+          +     +  
Sbjct: 483 ----RRTELLVGEV--LSLEDEDLIEEEDIVITLTSKGYIKRLPSSEFKSQRRGGRGVQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++  +   T D +L  + +GK Y      +        G  +  L+ ++  +
Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLLGVDSGE 596

Query: 601 DIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            +          +    L   +  G     +          G   + +   +++  V   
Sbjct: 597 TVQAVINVRGEAEEGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVT 656

Query: 657 TGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWID 713
            GD   ++G +    + F    +  M R   GVR    ++     VI    + E    + 
Sbjct: 657 NGDQNIIIGTHMGYAVSFHEKDVRNMGRTAGGVRGIRLRENDY--VIGVDLLTEDSEVLI 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKASEYAIKGRGGKGIKTANITSKNGNLAG 753



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 16/205 (7%)

Query: 516 EKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E+       +  G ++     +        L A+  KE D L      +    I++ +  
Sbjct: 609 EEGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHM 668

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G  Y +        R  G     +  I L  N  ++   +     ++L+++ KG     +
Sbjct: 669 G--YAVSFHE-KDVRNMGRTAGGVRGIRLRENDYVIGVDLLTEDSEVLIITEKGYGKRTK 725

Query: 628 ESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683
            SE     R GK     +       +  +  V GD  + ++     ++ F++  + +  R
Sbjct: 726 ASEYAIKGRGGKGIKTANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNVSAVSQTGR 785

Query: 684 GK-GVRLQSYKDGGISDVICFKICE 707
              GVR+    +      +     E
Sbjct: 786 ATLGVRVIRVAEDVKVSTMAKVDAE 810


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/775 (30%), Positives = 392/775 (50%), Gaps = 37/775 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +   + LV+  V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 17  DTVLEGDVLVD-RVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFD 75

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   
Sbjct: 76  GGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGN 135

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGI
Sbjct: 136 DGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGI 195

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+ +     + NP  S     E+LL  + GPDFPTG  I+   + I
Sbjct: 196 AVGMATNIPPHNLREVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATIL-GHKGI 254

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   +I  + 
Sbjct: 255 EDAYRTGRGSVTMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIA 313

Query: 300 DIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RDE S    + ++    R     +++ +++  +++++ F  NM  +  G VP+ + LD
Sbjct: 314 DLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPRTLSLD 372

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
             ++ W+ H+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     + 
Sbjct: 373 AFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARD 432

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q  AIL+++LR L  LE  +I+     L A   + + +L S ++Q   I
Sbjct: 433 GLMELLDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNEILGSEQRQREII 492

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
           + E+ E+ +          RRT        D     + +I +E + V I+  G+++    
Sbjct: 493 STELGEIVDKHGD-----DRRTRIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRS 545

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRG 585
                 +     +     +  D ++      T   +L  +  G+ Y   A  L       
Sbjct: 546 DNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEAGRDA 605

Query: 586 HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+    ++ I        Y     L++ + +G        +   N   G   +
Sbjct: 606 KGQHVANLMAFQPDEHIAQVLDLKDYQQAPYLVLATKRGLVKKTRLEDYDTNRSAGVIAI 665

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRLQSYKDGGIS 698
            +   +++     V+  D + +V    + + F  + D +  M R   GV    +++    
Sbjct: 666 NLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPMGRATSGVTGMKFREDD-E 724

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 725 LLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVAKLAEERGDLVGA 779



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 15/214 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     ++ P  V+ + RG ++  +    D +      A++ ++GD L  A
Sbjct: 617 QPDEHIAQVLDLKDYQQAPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDGDELVSA 676

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                TD +LL+S  G++    A    + R  G A   +  +    + +++ A V     
Sbjct: 677 QLVSETDDLLLVSRKGQSIRFTATE-DALRPMGRATSGVTGMKFREDDELLAANVVTDGS 735

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSS--EEKMKLVVKVTGDHVAVVGENR 668
            + +V+  G A      E     R G      K++    + +  ++    D V VV E  
Sbjct: 736 FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVAKLAEERGDLVGALIVQEEDEVLVVMEGG 795

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDV 700
           K++  S+  +P   R   GV      K+  I +V
Sbjct: 796 KVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEV 829



 Score = 45.5 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R +   +  ++ + F+E D L  A        + +++  G  K   +    L    G G
Sbjct: 704 LRPMGRATSGVTGMKFREDDELLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLG 763

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
             +  L       D+V A +     ++LVV   G       + + A  R   G  F K  
Sbjct: 764 IKVAKLA--EERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPD 821

Query: 646 SEEKMKLVVK 655
             +++  V +
Sbjct: 822 KNDRIIEVAR 831


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 406/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKL------LVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T                +  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V + +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 408/762 (53%), Gaps = 32/762 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V  N + +++   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM+++G+     
Sbjct: 1   MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF  RYPL+ GQGNFG++D D AAA RY
Sbjct: 61  YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ Q+AE +L  +D++ VDF   ++    EP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 121 TEARLAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+C+A   LIDNP+  +++L++++ GPDFPTGG I+   + I  +Y  G+G   
Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTIL-GTDGIKSAYATGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           ++A+  + EV      I VTEIPYQV K+ L+ KIAEL+  +++  + D+RDES      
Sbjct: 240 IQAKAHIGEV-ETRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  +P  ++ S++  ++M T F +NM  L  G+ PQV+ L  +LK ++  R  +
Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS F ++A   R  IL+GL  A   ID IIAIIR   N D  +  +++ F  +  Q 
Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAEFDFSVVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+L+LR L  LE  +I  E   L+     ++ LL+  ++ +  +  + +++K  + +
Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQ 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                  R T             + ++    + V +S RG+I+                +
Sbjct: 478 P------RATEISNQGV-IEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGI 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLN 597
             +  +E D+++    + T D +L  +  GK ++L   ++    S    G AI  LI + 
Sbjct: 531 MGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVT 590

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        + +   LL+ ++KG        E  A    G   + +++ +++   V
Sbjct: 591 QDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAV 650

Query: 655 K-VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTW 711
           + +    + +     + + F + ++    R   GV+          +V+   +  EG   
Sbjct: 651 ETIEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIVL--SMEDEVVSMDVAQEGTMV 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I        +           R G G +  K   ++G+ ++S
Sbjct: 709 ITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS 750



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 20/218 (9%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                A L       +   ++ +N+G I+              L A+     D L  A+ 
Sbjct: 592 DERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAVE 651

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                 ILL +  G++   P   L  S R  G    +++ +    ++V+  V      ++
Sbjct: 652 TIEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSME--DEVVSMDVAQEGTMVI 709

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
            V+  G   +    E     R G   +     +K   VV        D + ++  +  + 
Sbjct: 710 TVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSVTDQMMLISADGMVT 769

Query: 672 IFSIDQ------IPEMSRGK-GVRLQSYKDGGISDVIC 702
              + +      IP M R   GVR+   ++G     + 
Sbjct: 770 RTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/778 (32%), Positives = 407/778 (52%), Gaps = 45/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ +  E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+R+VGEV+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++EI   A   +++P+ S E+LL    E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    + ++    R     +++ +++  + ++  FP NM  L  G VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W++H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++  
Sbjct: 372 WVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E + L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+ E +        RRT        D     + +I +E + V I+  G+         RS
Sbjct: 492 EIVEKYGDE-----RRTRIV---PFDGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                  +     +E D +       T   +L  +  G+ Y      L  G     G+ +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELQDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG-- 696
                +++     + TG  + +V    + L F  D   +    R   GV    +++    
Sbjct: 664 EDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRPTGRATSGVTGMRFREDDYL 723

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              DV+     +   ++ + G  Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEG-GYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 24/210 (11%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRI 563
            ++    V+ + RG ++  +    + +      A++ ++      D L  A    T   +
Sbjct: 624 YDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDL 683

Query: 564 LLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVV 617
           LL+S  G++    A +     +GR    +    +    +  ++   V D       L VV
Sbjct: 684 LLVSHAGQSLRFHADDDTLRPTGRA--TSGVTGMRFREDDYLLAMDVVDPSWQDADLFVV 741

Query: 618 SSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G A      +     R G   K    V +   +   +    GD V  +  + K++  
Sbjct: 742 TEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRS 801

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++ ++    R   GV       G     + 
Sbjct: 802 AVVEVSRTGRTTQGVTFAKPDAGDRIIAVA 831


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/859 (30%), Positives = 408/859 (47%), Gaps = 118/859 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ +S+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M 
Sbjct: 4   KDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  G
Sbjct: 124 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALI++P + I+ L+  I GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIIL-GRAGIRLA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R +  +E V +    I+V+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   PD+++  ++  + ++T F  NM  L     P +M L  +L 
Sbjct: 303 DESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVAL-DAGRPHLMNLRDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R +V+ RR+ + +     R  IL GL IA  NIDE+I +IRN   P         
Sbjct: 362 LFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               K        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    +  E+  VK  F+       R+T   E    +     + 
Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATP-----RKTMIIE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T        +      ++  
Sbjct: 594 FSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN    + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVP 713

Query: 677 QIPE-MSRG----KGV------RLQSY-----------------------------KDGG 696
            +     R     +G+      ++ S                              +D  
Sbjct: 714 DVRVFTGRTSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTD 773

Query: 697 ISDVICFKICE------GLT----------------WIDSAGRSYNRSENDLLGWLGKRG 734
           +S+V             GLT                 +  +   Y +  +        RG
Sbjct: 774 VSEVSEVTAEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRG 833

Query: 735 GVGSLVPKGFPRSGKFLSS 753
           G G        R+GK ++S
Sbjct: 834 GKGIGAMSVNNRNGKLVAS 852



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-EEKMKLVVKVTG-DHVAVVG 665
           S   +L +S  G        E     R  KG   + V++   K+     V   D + +V 
Sbjct: 806 SEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMSVNNRNGKLVASFPVEDSDQIMLVT 865

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGL 709
           +N +L+   ++ I    R  +GV    +  D  +  V      E  
Sbjct: 866 DNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIPEAEEA 911


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/776 (30%), Positives = 389/776 (50%), Gaps = 37/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +   + LV+  V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 16  VEPVLEGDVLVD-RVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMF 74

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+  
Sbjct: 75  DGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPG 134

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SG
Sbjct: 135 NDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +     + NP  S     E+LL  I GPDFPTG  I+   + 
Sbjct: 195 IAVGMATNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATIL-GHKG 253

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+  G  C+VVTE+PYQ     L  KIAEL+   +I  +
Sbjct: 254 IEDAYRTGRGSITMRAVVNVEEL-EGRTCLVVTELPYQANPDNLAIKIAELVKDGKISGI 312

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D+RDE S    + ++    R     +++ +++  + ++  F  NM  +  G VP+ + L
Sbjct: 313 ADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFAANMLAIVDG-VPRTLSL 371

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
           D  ++ W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     +
Sbjct: 372 DAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAR 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I+     L A   + +S+L S ++Q   
Sbjct: 432 DGLMQLLDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNSILASEERQREI 491

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           I+ E+ E+            RRT        D     + +I +E + V I+  G+++   
Sbjct: 492 ISTELSEIVAKHGD-----DRRTKIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTR 544

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGR 584
                  +     +     +  D ++      T   +L  +  G+ Y   A  L      
Sbjct: 545 SDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEAGRD 604

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I              L++ + +G        +   N   G   
Sbjct: 605 AKGQHVANLLAFQPDEHIAQVLDLRDYQHAPYLVLATKRGLVKKTRLEDYDTNRSAGVIA 664

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +   +++     V+  D + +V    + + F+     +  M R   GV    +++   
Sbjct: 665 INLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTATDDALRPMGRATSGVTGMKFREDD- 723

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 724 ELLAADVVKDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGA 779



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 15/214 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     +  P  V+ + RG ++  +    D +      A++ ++GD L  A
Sbjct: 617 QPDEHIAQVLDLRDYQHAPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDGDELVSA 676

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                TD ++L+S  G++    A +  + R  G A   +  +    + +++ A V     
Sbjct: 677 QLVSETDDLMLVSRMGQSIRFTATD-DALRPMGRATSGVTGMKFREDDELLAADVVKDGS 735

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            + +V+  G A      E     R G        +E+    +  ++    D V VV E  
Sbjct: 736 FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGG 795

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDV 700
           K++  S+  +P   R   GV      K+  I +V
Sbjct: 796 KVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEV 829



 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  ++ + F+E D L  A        + +++  G A              G  
Sbjct: 704 LRPMGRATSGVTGMKFREDDELLAADVVKDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLG 763

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I++         +V A +     ++LVV   G       + + A  R   G  F K    
Sbjct: 764 IKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKN 823

Query: 648 EKMKLVVK 655
           +++  V +
Sbjct: 824 DRIIEVAR 831


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/755 (36%), Positives = 453/755 (60%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  ++ DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K V  +  D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++ +        ++  +S +I       LT + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 710 KRKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 405/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKL------LVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T                +  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +G ++     + D S      A++F+ E D L  A      D +LL+S  G+A    A
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSA 697

Query: 578 GN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           G+      GR     +  +     ++     I+ + + +    +   +  G A     SE
Sbjct: 698 GDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSE 756

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G     + +S      +  +V    D +  +  + ++   ++ ++P   R   
Sbjct: 757 YRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTM 816

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV+  S + G    +I      
Sbjct: 817 GVKFVSVRGGDAVSIIAVNPEH 838


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 412/764 (53%), Gaps = 31/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V L  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ L  
Sbjct: 2   ENLFENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGDSAAA
Sbjct: 62  KVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    +V+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D
Sbjct: 241 RVRIRAKHHIESKAK-KDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + SRF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSRFGLSS 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAILRSEEKLNEIIKEELNEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSTPRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRADEKIMAIIPTPDFDESKSLVFFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDTDEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC-FKICEG 708
             +  V   ++ +     + + F +++  +  R  +GVR   +K      V       E 
Sbjct: 651 AKIADVQTQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEE 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  R G G +  K  P++G  + 
Sbjct: 711 QEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSPKTGNIVG 754



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 A +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 ADEKIMAIIPTPDFDESKSLVFFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDTDEIVTAK 652

Query: 556 HAH-TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIV--TAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +  I    + DIV     + + 
Sbjct: 653 IADVQTQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G     +K+   +   +  V+      + ++  
Sbjct: 710 EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSPKTGNIVGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A      ++ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  IV   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVIAMKLSPKTGN--IVGEVLVDDTQDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/764 (29%), Positives = 391/764 (51%), Gaps = 38/764 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     ++ K 
Sbjct: 25  RVDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPERSYNKC 84

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+G+ HPHGD ++YD+LVRL Q +V RYPL  GQGNFG+   D AAA RYTE +
Sbjct: 85  ARVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSPGNDGAAAQRYTETK 144

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++E+ VDF+D Y+ ++ EP V P++FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 145 MAPLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHN 204

Query: 196 VQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     + NPE S E    +L+  + GPDFP+G +I+   + I ++YR GRG   
Sbjct: 205 LREVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMIL-GTKGISDAYRTGRGSIT 263

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +G  C+VVTE+PY      L  KIAEL+   +I  + D+RDE S    +
Sbjct: 264 MRAVVNVEEI-QGRTCLVVTELPYMANPDNLAVKIAELVRDGKISGIADMRDETSGRTGQ 322

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +++++ F  NM  +  G VP+ +PLDG ++ W+ H+ E
Sbjct: 323 RLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPRTLPLDGFIRHWVTHQIE 381

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ +R++  +    IL+GLL A   +DE+IA+IR        +  ++    + E+Q
Sbjct: 382 VIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARDGLMELLDIDEDQ 441

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I+     L     +  +++    +Q   ++ E++E+     
Sbjct: 442 ARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHG 501

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT        D     + +I +E + V I+  G+++                
Sbjct: 502 D-----DRRTKVL--MGYDGDMSVEDLIPEEEMVVTITRGGYVKRTRIDNYRSQARGGKG 554

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +   + +  D ++      T + +L  +  G+ Y      L        G+ +  ++   
Sbjct: 555 IKGANLRGDDVVEHFFVTSTHNWLLFFTNHGRVYRTKCYELAEAGRDAKGQHVANVMAFQ 614

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            ++ I        Y     L++ +  G        +   N   G   + +  ++++    
Sbjct: 615 PDEHIAQVLDLRTYQDAAYLMLATRNGLVKKTRLEDYDTNRTAGVIAINLREDDELVSAQ 674

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
            V+  D V +V    + + F+     +  M R   GV    +++G   +++   +    +
Sbjct: 675 LVSESDDVMLVSRKGQSVRFTATDTALRPMGRATSGVTGMKFREG--DELLAADVVRDDS 732

Query: 711 WI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           ++       Y +        +  RGG+G  V K     G+ + +
Sbjct: 733 YVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVAKLNEERGELVGA 776



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 16/217 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     +     ++ +  G ++  +    D +      A++ +E D L  A
Sbjct: 614 QPDEHIAQVLDLRTYQDAAYLMLATRNGLVKKTRLEDYDTNRTAGVIAINLREDDELVSA 673

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                +D ++L+S  G++    A +  + R  G A   +  +      +++ A V     
Sbjct: 674 QLVSESDDVMLVSRKGQSVRFTATD-TALRPMGRATSGVTGMKFREGDELLAADVVRDDS 732

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            +  V+++G A     +E    +R G         E+    +  ++    D V VV  + 
Sbjct: 733 YVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVAKLNEERGELVGALIVDETDEVLVVMGSG 792

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           K++  ++ Q+P   R   GV     K      +I   
Sbjct: 793 KVVRSAVSQVPSKGRDTMGVIF--AKPDKKDHIIAVA 827



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 490 TDLGRRRT--TFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRSLKSHS 537
            D    RT        R D   +   ++ +    +++S +G           +R +   +
Sbjct: 649 EDYDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTALRPMGRAT 708

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             ++ + F+EGD L  A        +  ++ +G A              G  I++     
Sbjct: 709 SGVTGMKFREGDELLAADVVRDDSYVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVAKLNE 768

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
              ++V A + D T ++LVV   G       S++ +  R   G  F K   ++ +  V K
Sbjct: 769 ERGELVGALIVDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIFAKPDKKDHIIAVAK 828


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/759 (36%), Positives = 449/759 (59%), Gaps = 25/759 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++   + E+ ++ VSL+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTDVIEIDEDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  
Sbjct: 61  LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+T  A+++L  + +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+++P+ ++ +L E++  PDFPT   I+  RE I+  Y 
Sbjct: 181 VGMATDVPPHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIMAMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E        IVV+ +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGALKMRAVWEKEGPD-----IVVSALPHQVSGSKVLEQIAHQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++ + +M  +F  +D+E  + +N+N++ +   P V  LD ILK
Sbjct: 296 SDHENPTRLVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGLDRILK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R E + RR  +R++ + RR+ IL G L+A+LNIDE+I IIR EDKPKP ++ RF 
Sbjct: 356 EWLKFRTETVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPALMKRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q +AIL+L+LR+L KLEE +I+ E D L  E++++ ++L S  +    I  E++ V
Sbjct: 416 ISDVQAEAILDLKLRNLAKLEEMKIRGEQDELEVERDQLQTILGSAARLKTLIKKELQSV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E F      G  R +        +A  +  ++  +PITVV+S +GWIR+ K H +D S+
Sbjct: 476 AEKF------GDDRRSPLMARGEAQAFSELDLMTADPITVVMSEKGWIRAAKGHDIDPSS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K+A    +    ++L + G+AYT+P+ NL S RG GE +   I+       
Sbjct: 530 LSYKSGDGFKMAAKGRSNQPTVILDSTGRAYTVPSHNLPSARGQGEPVTGRINPPSGATF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               + D     L+ S  G  F+ +  E+    + GK  L +     +     +    G 
Sbjct: 590 EGLMMGDEGDLYLLASDAGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGA 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            VA V    +LL+F ++ +P+M+RGKG ++          ++  +  V      + L  +
Sbjct: 650 WVAAVTNEGRLLVFPLEDLPQMARGKGNKIIGIPTARVQSREEFVIAVQVLTDKDTL-VV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  R +    +DL  + G+RG  G+ +P+GF +    L
Sbjct: 709 YAGKRHHKLKFSDLKHYCGERGRRGNKLPRGFQKVDAML 747


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 409/767 (53%), Gaps = 40/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A+KK
Sbjct: 7   EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAYKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQP+  RY L+ GQGNFG++DGD  AA RYTEA
Sbjct: 67  SARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++++ +L  +D++ VDF+  +++   EP V P++ P LL NG SGIAVGMAT++  H
Sbjct: 127 RLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +ISI++L ++I  PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 187 NLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGI-IYGYDGVKQAFETGRGRVVMRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CI+VTEIPYQV K+ +I K A+LI   ++  + +IRDES      +++
Sbjct: 246 KANFEEVH-GRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIVY 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                  P++++  ++  + +++ F +N   L  G  P+ + L  +++ ++ HR EV+ R
Sbjct: 305 VLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNG-RPEQLNLKDMIRHFVDHRHEVVVR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           R+ F ++    R  IL+G +       ++D  I IIR  + P   +  +++ F L+E Q 
Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMTAFDLSEIQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL LRLR+L  LE  +I++E + ++   E + ++L+    +++ I  E+ E+K  ++ 
Sbjct: 424 RAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLKNILSDEDLRFSIIKEELEEIKRKYAD 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  +      + +I  + + + IS+ G+I+              V  
Sbjct: 484 E-----RRS---EIDYSGGDLNIEDLIPDDNVVLTISHLGYIKRTPLTEYKKQSRGGVGN 535

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   ++ D L+  + A     +L  +  GK + L    +  G     G AIQ LI++  
Sbjct: 536 RAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPEGSKTSKGRAIQNLINIEP 595

Query: 599 NQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +    +        Y +   +++V+  G                G   + +  ++ +
Sbjct: 596 DDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYSRPRINGINAITIREDDTL 655

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-- 706
              +   G   + +  +  K + F  +++  M R   GVR  +  D   ++VI   +   
Sbjct: 656 LEALLTDGKSQIMIATKYGKAIRFEDEKVRPMGRTASGVRGINLGDDKDNEVIGMIVVSD 715

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + Y +  +        RGG G        ++GK ++
Sbjct: 716 MENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKTGKLIA 762



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 21/237 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV- 538
              T  GR       +   DK     L   ++++E +     ++++  G I+     +  
Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                 ++A+  +E D+L  AL      +I++ +  GKA       +  +     G    
Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPMGRTASGVRGI 697

Query: 592 LLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
            L D   N+ I    V D     +LVVS KG        +     R GK    ++  EK 
Sbjct: 698 NLGDDKDNEVIGMIVVSDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKT 757

Query: 650 --MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +  +  VT D  + ++ ++   +   + +I  M R   GV+L + K       I 
Sbjct: 758 GKLIAIESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIA 814


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/755 (36%), Positives = 453/755 (60%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++   + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++   K V  +  D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++ +        ++  +S +I       LT + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 710 KRKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/755 (35%), Positives = 441/755 (58%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE     +  IV+T +P+Q    +++E IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RF+
Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  +Q +   EP+TVV+S++GW+RS K H +D  +
Sbjct: 476 GETYGD-----DRRSPIVERHE-SKALTEQELTPSEPVTVVLSDKGWVRSAKGHDIDAES 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   + +L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREM 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R      +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVD 744


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/764 (34%), Positives = 425/764 (55%), Gaps = 33/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L+ ++++ V++  +++E YL Y++S I  RA+PD RDG KPVHRRI++AM E+G+   
Sbjct: 2   SDLLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSK 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGDSAAA 
Sbjct: 62  AKYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+MTQ AE +L+ +D+D VDF   Y++   EP + PS+ PNLL NG++GIAVGMAT
Sbjct: 122 RYTEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP H + EI +A + LID+P+  + ++L++I GPDFPTGGI +  +  I E+Y  GRG 
Sbjct: 182 NIPPHRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGI-IYGKNGIKEAYETGRGR 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++RA+  +E+  +    IV+ EIPYQV K+RL+E+IAEL   K I  + ++RDES  D 
Sbjct: 241 IKIRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDG 299

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++  +F  + ME+ F + +  +     P++  L  +L  +++HR+
Sbjct: 300 IRVVVELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKE-PKIFTLLELLALFISHRK 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            V+ RR+ F ++    R  IL+GL IA  NIDEI+A+IR+   P   K  ++ +F+L+E 
Sbjct: 359 SVVIRRTIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEKFNLSEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RL+ L  LE  +I++E   L+ E E + S+L S +     I  E+ EVKE F
Sbjct: 419 QAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEELLNKIIKEELLEVKEKF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541
           S       +R T  E     ++   + +I  E + V +S+RG+++ +   + +       
Sbjct: 479 ST------KRLTAIE--EDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQNRGGK 530

Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
              + +  + D ++    + T D I+ ++  G+ Y L    +   S    G+A+  LI L
Sbjct: 531 GKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVNLISL 590

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I+       ++    +   +  G       SE       G   + +  ++++   
Sbjct: 591 APDEKIMATITTKDFNEDKSIAFFTKNGIIKRTNLSEFKNIRSVGVKAINLDGDDELVTA 650

Query: 654 VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEG 708
             +  +   + VV      + F +D + E+ R  +GV    +K     +         E 
Sbjct: 651 KIIHPEIQQILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKIPKDYVIGATVVS-SEN 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        +  RGG G +  K   ++GK + 
Sbjct: 710 EEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTSKTGKLVG 753


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/757 (31%), Positives = 396/757 (52%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V+L   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKS
Sbjct: 4   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+ LVR+AQ F  RY L+ G GNFG++DGD AAA RYTEA+
Sbjct: 64  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ +++D VDF+D Y+  + EP V P++FPNLL NG SGIAVGMAT+IP+HN
Sbjct: 124 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A   L++NP++++ +L++ + GPDFPTGG+++  +  I ++Y  G+G   VRA+
Sbjct: 184 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAK 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVV EIPY V K++LIE+IA L   K I  + D+ DE+  +   ++  
Sbjct: 243 VEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVID 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ ++ M+T +  NM  +  G  P+++ L  IL+ +L H+ EV+ RR
Sbjct: 303 VRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGA-PKILSLKEILQYYLEHQEEVVRRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  I+ GL IA  +ID II IIR+ +     K  ++  +SL++ Q  AIL
Sbjct: 362 TEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL  L  LE  +I+ E   L+A       +L   ++    I  E+ E++  F      
Sbjct: 422 DLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQERINQIIYDELMEIQNKF------ 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T  +V        +  +  +E I V +++ G+++                +  + 
Sbjct: 476 GDERRTELQVGDISNIEDEDLIE-EEDIIVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMG 534

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
               D ++  + + T D +L  +  GK + +    +        G  I  L+D++  + +
Sbjct: 535 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQGIPIINLLDVDGKEKV 594

Query: 603 VTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                      D    L  V+ +G       +E       G   + +   +++  V  V 
Sbjct: 595 TAVINVAQREDDLQKDLFFVTRQGTVKRTLVTEFKNIRSNGIKAINLHEGDELINVAIVD 654

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D   ++G +      F +  +  M R   GVR    +DG    +    + E    +  +
Sbjct: 655 DDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYL-IGAAPLNEDDQVLVIS 713

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + Y +        +  RGG+G        ++G    
Sbjct: 714 EKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAG 750



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 14/200 (7%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ +G ++           S  + A++  EGD L           ++L +  G A T 
Sbjct: 612 FFVTRQGTVKRTLVTEFKNIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATF 671

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S       ++    L     ++ A   +   ++LV+S KG       SE     
Sbjct: 672 KVSAVRSMGRSAAGVRGA-RLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKG 730

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R G     V+  EK   +  +  V GD  + VV +   ++ F ++ + +  R   GV L 
Sbjct: 731 RGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLI 790

Query: 691 SYKDGGISDVICFKICEGLT 710
                 +  V      E  T
Sbjct: 791 KMDADSV--VATMTKVEKET 808



 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 507 KATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              +  A+++ +   ++ ++ G         +RS+   +  +     ++GD L  A   +
Sbjct: 645 DELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMGRSAAGVRGARLRDGDYLIGAAPLN 704

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
             D++L++S  G     PA         G  I+ +     N  +           L+VV+
Sbjct: 705 EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVT 764

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
            KG         +    R   G   +K+ ++  +  + KV  +
Sbjct: 765 DKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKE 807


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/751 (34%), Positives = 390/751 (51%), Gaps = 60/751 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 4   TDDNKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  G
Sbjct: 124 GDSAAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L + + GPDFPTGGII+  R  I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIIL-GRAGIRLA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YHTGRGSIVMRGKVAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   PD+++  ++  + ++T F  NM  L     PQ+M L  +L+
Sbjct: 303 DESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVAL-DAGRPQLMNLKDLLR 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            ++A R +V+ RR+ F +     R  +L GL IA  NIDEII +IR    P         
Sbjct: 362 LFVAFREQVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMA 421

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+  Q  AIL+LRL  L  L   +I  ELD 
Sbjct: 422 RDWEAKDVAAMITLIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    I  E+  VK  F+       R+TT  E    +     + 
Sbjct: 482 LAIEIADYLEILRSRARVQTIIKEELAAVKAEFATP-----RKTTIIE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           +++G     + S+ +   R G   +K+   E +  V   T  D V +     + + F++ 
Sbjct: 654 TTRGTVRRNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVT 713

Query: 677 QIPE-MSRGK-GVRLQSYKDGGISDVICFKI 705
            +    SR   GVR  +  +G    VI   I
Sbjct: 714 DVRVFQSRASMGVRGMALANG--DQVISLTI 742



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 19/188 (10%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIA-----LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                S+ +  +    GD +          A+  +R   L   G       G        
Sbjct: 718 FQSRASMGVRGMALANGDQVISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEG 777

Query: 587 GEAIQLLIDLNHNQ-DIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKG 638
            E    + D    + D + +   D       +   +L +S  G        E     R G
Sbjct: 778 SELAAEVADAEPEEVDAIASLSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGG 837

Query: 639 KTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSY 692
           K  + ++   +   +     V   D + +V +  +L+   +  I  + R  +GV    + 
Sbjct: 838 KGIVAMAVNARNGKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTA 897

Query: 693 KDGGISDV 700
           +D  +  V
Sbjct: 898 EDEHVVSV 905


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/778 (32%), Positives = 407/778 (52%), Gaps = 45/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++  V E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G   
Sbjct: 15  TSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A+F KS+R+VG+V+G  HPHGD ++YD+L RL Q +  RYPL++GQGNFG       AA
Sbjct: 75  TASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE +M  +A  +L+ +DED+VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMA
Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244
           T IP HN++E+   A   +++P+ S E+LL    E I GPDFPTG  I+  R  I ++YR
Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   ++  + DIRDE
Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312

Query: 305 -SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            S    + ++    R     +++ +++  + ++  FP NM  L  G VP+ + LDG ++ 
Sbjct: 313 TSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRH 371

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420
           W++H+ +V+ RRS FR++  + R+ IL+GLL A   +D +IA+IR     ++ +  ++  
Sbjct: 372 WVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGL 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL+L+LR L  LE  +I+ E D L A  + +  ++ S ++Q   ++ E+ 
Sbjct: 432 LDVDEAQAEAILSLQLRRLAALERLKIQEESDELRARVKDLREIIASPERQRGIVSDELA 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532
           E+ E +        RRT        D     + +I +E + V I+  G+         RS
Sbjct: 492 EIVEKYGDE-----RRTRIV---PFDGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRS 543

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                  +     +E D +       T   +L  +  G+ Y      L  G     G+ +
Sbjct: 544 QHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDSKGQHV 603

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+     ++I        YD    L++ + +G       SE  +N   G   + +  +
Sbjct: 604 ANLLAFQPGEEIAQVMELRDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQD 663

Query: 648 -----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG-- 696
                +++     + TG  + +V    + L F  D   +    R   GV    +++G   
Sbjct: 664 EDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRPTGRATSGVTGMRFREGDYL 723

Query: 697 -ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              DV+     +   ++ + G  Y +  N +   +  RGG+G  V       G  + +
Sbjct: 724 LAMDVVDPSWQDADLFVVTEG-GYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 24/210 (11%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRI 563
            ++    V+ + RG ++  +    + +      A++ ++      D L  A    T   +
Sbjct: 624 YDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDL 683

Query: 564 LLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVV 617
           LL+S  G++    A +     +GR    +    +       ++   V D       L VV
Sbjct: 684 LLVSHAGQSLRFHADDDTLRPTGRA--TSGVTGMRFREGDYLLAMDVVDPSWQDADLFVV 741

Query: 618 SSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  G A      +     R G   K    V +   +   +    GD V  +  + K++  
Sbjct: 742 TEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRS 801

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++ ++    R   GV       G     + 
Sbjct: 802 AVVEVSRTGRTTQGVTFAKPDAGDRIIAVA 831


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/812 (32%), Positives = 411/812 (50%), Gaps = 84/812 (10%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G D+  A+KK
Sbjct: 6   KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  IL  +D++ VDF   Y+  +  P V P++ PNLL NGTSGIAVGMAT+IP H
Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A LALIDN E++ E++LE+I GPDFPT GI +  R  I E+YR GRG  ++RA
Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGI-ISGRAGIEEAYRTGRGKIKIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  ++     G   I+V E+PYQV K+RLIEK+AEL+  KR+  +  +RDES +D   ++
Sbjct: 245 RASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++ L+ M+  F LNM  L+ G+ P++  +  +L+ ++ HRREV+ 
Sbjct: 305 IEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------------------- 410
           RR+ F ++    R  IL+GL IA  NID II +I+N                        
Sbjct: 364 RRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANM 423

Query: 411 ------DKPKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                 D  +P  +          + LT  Q  AI++L+L  L  +E  +I SE   LL 
Sbjct: 424 LSEAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLD 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L +  +    I  E+  +++ F        RRT   E++ A      + +I 
Sbjct: 484 LIAELMHILATPARLMEVICEELVAIRDEFGDE-----RRT---EITNASHDLSLEDLIT 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++          +      +A   KE D ++  L A+T D IL  S 
Sbjct: 536 EEDVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSD 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y L    L   S    G  I  ++ L  ++ I        Y     +++ ++ G  
Sbjct: 596 RGKLYWLKVFQLPLASRTARGRPIVNILPLESDERITAILPVRDYADDKYIVMATASGTV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID------ 676
                         G   L +  ++ +  V    G + V +  +  K++ F+        
Sbjct: 656 KKTRLDAYSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSET 715

Query: 677 --------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
                          +  + R G GVR     +G    V           +      + +
Sbjct: 716 GEIKLDPETGEQRWALKPIGRTGTGVRGIKL-EGEQKVVSLIIPKNDGPILTITENGFGK 774

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +        R   G +  K   R+GK + +
Sbjct: 775 RTDLAEYPAKSRATKGVVSIKVSERNGKVVGA 806



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 80/225 (35%), Gaps = 30/225 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L       +   V+ +  G ++  +  +        + AL+ ++ D+L   
Sbjct: 626 ESDERITAILPVRDYADDKYIVMATASGTVKKTRLDAYSNQRANGIIALNLRDDDTLIGV 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLS-------------GRGHGEAIQLL------ID 595
                T+ ++L S  GK          S              R   + I         I 
Sbjct: 686 DITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKLDPETGEQRWALKPIGRTGTGVRGIK 745

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKL 652
           L   Q +V+  +  +   +L ++  G     + +E  A +R  K  + +       K+  
Sbjct: 746 LEGEQKVVSLIIPKNDGPILTITENGFGKRTDLAEYPAKSRATKGVVSIKVSERNGKVVG 805

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V+V   D + ++ ++  L+   ++++  + R  +GVRL    D 
Sbjct: 806 AVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLIRTADD 850


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/761 (31%), Positives = 397/761 (52%), Gaps = 34/761 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V L   + + ++ YA+S I +RA+PD+RDG KPVHRRI+ +M   G      ++K 
Sbjct: 25  NIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRKC 84

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG V+G  HPHGD +VYDS+VRLAQ F  R+ ++ G GNFG+ DGD  AAYRYTEAR
Sbjct: 85  ATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEAR 144

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++A  +++ ++++ VDF+  ++E++ EP+V PS+FPNLL NG++GIAVGMAT IP HN
Sbjct: 145 LTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPHN 204

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A +  I+NP+  +E ++E + GPDFPTGG I+     I E+YR G+G   VR+ 
Sbjct: 205 LGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTIL-GLSGIRETYRTGKGRITVRSA 263

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLF 314
             +E++      IVV ++PY V K+RLIEK+A+L+  KRI  +  IRDES  +  I ++ 
Sbjct: 264 ASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVI 323

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS----MGRVPQVMPLDGILKEWLAHRRE 370
              R  +P +++  ++ ++ ++  F  NM  L         P+V+ L   L  ++AH++ 
Sbjct: 324 ELKRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQKS 383

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F +     R  I++GLL A  NIDE+I IIR   NE+  K  +  RF  +  Q
Sbjct: 384 VVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCERFDFSIRQ 443

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              I+++RL  L  LE  +++ ELD L+ + E  + ++N        I  E+ ++K  ++
Sbjct: 444 AQHIVDMRLGRLTALERERLQKELDELIVKIEYFNRIINESSLLNQVICDELTDLKTRYA 503

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVD 539
                  +R T  E    D     + ++++E + + +++ G+++                
Sbjct: 504 ------NKRRTVIEPYSLD-EFEDEELVKEEEVVITLTHFGYVKRQPVDTYQQQHRGGRG 556

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +S L  +E D ++  +   T D +L  +  G+ + L    +     +  G+AI  L+ L 
Sbjct: 557 ISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPEAGRQAKGQAIVNLLQLV 616

Query: 598 HNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV- 653
             +    ++T   ++    LL+ +++G        E     + G   + +  ++++  V 
Sbjct: 617 EGEKVRTVITVHEFNREDYLLMATARGMIKKTSLYEYANIQKNGLIAINLRPDDEVIGVK 676

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-KICEGLTW 711
           V    + V +       L F  + I    R   GV     +      VI    + E    
Sbjct: 677 VSRLHEEVILATAGGYSLRFDTNDIRNTGRNTFGVSGIKLR--HSDKVIGMAAVDEERHL 734

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +   Y +        +  RGG G +  K   ++G    
Sbjct: 735 LVISKNGYGKRSEFNEYRIQNRGGKGLITYKPTEQTGDLAG 775



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 26/217 (11%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            +      +E   ++ + RG I+    +         L A++ +  D +     +   + 
Sbjct: 624 VITVHEFNREDYLLMATARGMIKKTSLYEYANIQKNGLIAINLRPDDEVIGVKVSRLHEE 683

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L +  G +      ++ +  G        I L H+  ++     D    LLV+S  G 
Sbjct: 684 VILATAGGYSLRFDTNDIRN-TGRNTFGVSGIKLRHSDKVIGMAAVDEERHLLVISKNGY 742

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-----------ENRKLL 671
               E +E     R GK  +     E+       TGD   +             +   ++
Sbjct: 743 GKRSEFNEYRIQNRGGKGLITYKPTEQ-------TGDLAGIASINDEDDIIIINDAGIVI 795

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             +  +IP +SR  KGVRL       +   +     E
Sbjct: 796 RVATKEIPILSRVTKGVRLMRTAGQIVDLAVVQHDDE 832


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 24/210 (11%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            V+  +        +  G   + +  D   
Sbjct: 888 KVVSVERISDADSDEENGNGGDAAPEDDTP 917


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 406/762 (53%), Gaps = 36/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI++AM E+        +K
Sbjct: 7   DKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  ++  +++D VDF+  ++E + EPVV PS++PNLL NGT+GIAVGMAT+IP H
Sbjct: 127 RLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E  +  + +ID     N E +IE+L+E I GPDFPTG +I+  +  I ++YR GRG 
Sbjct: 187 NLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMIL-GKNGINQAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA   +E +  G   IV TE+PY V K++LIEKIAEL+  KRI  + D+RDES+ + 
Sbjct: 246 LKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +P++++  ++  + ++  + + M  L   + P ++ L  +L+ +L H+ 
Sbjct: 306 LRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQ-PMILNLKQMLELYLKHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
           EV+ RR+ F +   + R  IL+GLLIA  +IDE+I+IIR+     + K  ++  F LTE 
Sbjct: 365 EVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLMETFGLTEV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +I++E + L+    ++ ++L   K     I  EI+ +++ +
Sbjct: 425 QAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAILADEKLLLGVIREEIKLIRDKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   R+T+       D     + +I++E   + ++  G+I+               
Sbjct: 485 GD-----DRKTSLG---VDDDEITVEDLIKRENTVIAMTQLGYIKRMTMDNFRSQNRGGR 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +  +   + D +   + A+T D IL  +  G+ + L    +        G A+  L+ L
Sbjct: 537 GIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEASRIARGTALINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +        Y++   L + +  G        E I   + G   + +  ++++  V
Sbjct: 597 EPGEKVTATIPLEKYENDKYLFMATKNGMVKKTSIMEYINVRKTGLLAIGLREDDELIEV 656

Query: 654 VKVTGDHVA-VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI-CEGLT 710
                  +  +V +    + F  D +    R   GV         +  ++  ++  +G  
Sbjct: 657 KVTDESDLIYLVSQKGMSICFKQDNVRATGRTSMGVIGMDLDADDL--IVGMQVSSQGEA 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +   +        +  RGG G    K   ++G  + 
Sbjct: 715 VLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKITDKTGLVVG 756



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 16/215 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      AT+     E +    + +  G ++       +      L A+  +E D L   
Sbjct: 597 EPGEKVTATIPLEKYENDKYLFMATKNGMVKKTSIMEYINVRKTGLLAIGLREDDELIEV 656

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTC 612
                +D I L+S  G +      N+   R  G     +I  DL+ +  IV   V     
Sbjct: 657 KVTDESDLIYLVSQKGMSICFKQDNV---RATGRTSMGVIGMDLDADDLIVGMQVSSQGE 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +L+VS KG        E     R GK        +K  LVV V      D + ++    
Sbjct: 714 AVLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKITDKTGLVVGVKCVNAEDELMIITTGG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++   ++ I  + R   GV+L    +G +   I 
Sbjct: 774 IIIRMPVEGISILKRITSGVKLIQLDEGSVVASIA 808


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/757 (31%), Positives = 405/757 (53%), Gaps = 49/757 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K +++   +   ++ YA+S I  RA+PD+RDG KPVHRRI++AM+E+G+      K
Sbjct: 4   QENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPHK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +++ + ++ +D++  ++ E+ EPVV P++FPN L NGTSGIAVGMAT++P 
Sbjct: 124 ARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LAL  NP+I+I +L+++I GPDFPT G I+  R  I  +Y  GRG   +R
Sbjct: 184 HNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSITMR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E +  G   I+V EIPYQV K+RL+EKIA+L+  K+I  + D+RDES  +   ++
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +  +++ +++  + M+T F +NM  L  G  P+ + +   +  ++ H++EV+ 
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALV-GGRPKTLNIKQAIYYYIEHQKEVVR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +   + R  IL+GL +A  ++DE+IAIIR+    D+ +  +++RF L+  Q  A
Sbjct: 362 RRTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFGLSTEQTQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E   + A  E++ ++L   +   + I  E+ E+KE +  + 
Sbjct: 422 ILDMRLQRLTGLEREKIEGEYREVKALIEELRAILGDEELLLDIIRNELIEIKERYGDAR 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
                RT   E+         + +I    + + +++ G+I+        + +        
Sbjct: 482 RT-VIRTDIVELED-------EDLIPVRDMMITLTSEGYIKSIPSDSYRTQRRGGRGKQG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D +   L A T D IL  +  G+ + L    +   S    G  I  L+ ++  +
Sbjct: 534 MGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSRTAKGMPIINLLQIDKGE 593

Query: 601 DIVTAFVYDSTCK-----------------------LLVVSSKGNAFIVEESEIIANTRK 637
            + T    D                           L+ ++ +G       S      + 
Sbjct: 594 KVETMIPVDFNSYLANQTVAEETQDESEEVADEQLSLVFITKEGLIKRSPLSAYARINKN 653

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID-QIPEMSR-GKGVRLQSYKD 694
           G   + ++  +++  V    + D + +V      + F ++ ++  M R  +GVR    K 
Sbjct: 654 GLRAISLNETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRAIRLKK 713

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
                V    +      +    + Y +          
Sbjct: 714 EDDLVVSMEIVRTTQDVLIITEKGYGKRTAMEQFRTQ 750



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 84/214 (39%), Gaps = 10/214 (4%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
           +     + + +++   V I+  G I+        + +   L A+   E D L     A +
Sbjct: 615 ETQDESEEVADEQLSLVFITKEGLIKRSPLSAYARINKNGLRAISLNETDELVTVRLAKS 674

Query: 560 TDRILLLSTDGKAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            D +L+++  G +   P  G + S       ++ +     +  +V+  +  +T  +L+++
Sbjct: 675 DDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRAIRLKKEDDLVVSMEIVRTTQDVLIIT 734

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSID 676
            KG        +     R G   + + ++    + ++V    D + ++ E    +     
Sbjct: 735 EKGYGKRTAMEQFRTQGRGGSGIIGIKTDRGTVVGMRVVDEDDDIMLMTELGVAIRIDSQ 794

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            I +M R  +GV++ + ++G     I     + L
Sbjct: 795 TISQMGRSTRGVKVMNIEEGDRLATIAKLKKDEL 828


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/747 (35%), Positives = 444/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+ +A +AL+D P +S++ ++ Y+  PDFPT   I+ SRE I + Y+ GRG
Sbjct: 182 TDIPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P+++D+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGLVDILNEWIV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PKPV++SRF+L++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPVLMSRFNLSDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L+ E++++ S+L S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELIKERDELQSILGSERKLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EPITVV+S  GW+RS K H ++ S L++K
Sbjct: 477 GDE-----RRSPLREREE-AKALSEHEILPSEPITVVLSEMGWVRSAKGHDIEPSNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    T   ++ L T G++Y++    L S R  GE +   + L     +    
Sbjct: 531 AGDSFKGAARGKTNQPVVFLDTTGRSYSVDPLELPSARSQGEPLTGRLSLPPGATVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++  +    +  
Sbjct: 591 MAQDEQKYLMASDAGYGFICTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKI--CEGLTWIDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +        G   ++   +   +    +    R
Sbjct: 651 ITKAGRMLMFPVADLPQLSKGKGNKIINITGAQAASGEDLLVWLLVLPAQASITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  +L  +  +RG  G+ +P+G 
Sbjct: 711 KLRLKSEELQKYRAERGRRGTSLPRGL 737


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +K+  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/842 (31%), Positives = 405/842 (48%), Gaps = 118/842 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKG--FPRSGKF 750
                                 +   Y +  +     +  RGG G            GK 
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKL 839

Query: 751 LS 752
           ++
Sbjct: 840 VA 841



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
            LK     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TLKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 397/767 (51%), Gaps = 37/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ +  V +   ++  Y+ Y++S I  RA+PD+RDGFKPV RRI++AM  +G     A
Sbjct: 2   IDQDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR VGEV+GK HPHGD S+Y +L R+AQ +  RYPL+ GQGNFG+IDGDS AA RY
Sbjct: 62  YMKSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+RM+ + E ++  +D++ VD ++ ++++  EP V P++ PN L NG +GIAVGMAT++
Sbjct: 122 TESRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNV 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +  +A IDNPEI +E L+E+I  PDFPTG  I+   + +  +Y  G G   
Sbjct: 182 PTHNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIM-GLQGVRSAYETGHGRII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G     IVV EIPY V K+ LI+ IA L+  KRI  + D+ DES  +   
Sbjct: 241 LRAKTEIEN-GPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  + ++L+  +F ++ +++ F +N   L     P+V+ L   ++ ++ HR EV
Sbjct: 300 IVIEVKRDANANVLLNKLFKMTALQSSFAVNCVGLV-HGRPKVLSLKDCIRTFVDHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQV 428
           + RR+ + ++    R  IL+GL+IA  NIDE++ +IR    P   + +   RF L + Q 
Sbjct: 359 VIRRTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKRFELDDIQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+++RL  L  +++ ++  E + L  + +  + +L   +     +  E+ EVKE +  
Sbjct: 419 KAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDELCRQVMKDELNEVKEKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541
                 RRT   E+  + +    +     + + + IS+ G+I+                 
Sbjct: 479 -----VRRT---EIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAEFRAQGRGGVGS 530

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
                ++ D ++    A   + +L  +  G+ Y L    L  G     G AIQ ++++  
Sbjct: 531 RGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKGRAIQNMLNIEA 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             ++ +  ++  +++G        E       G   + +  E+++
Sbjct: 591 DDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPRTNGVKAITIREEDRV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKI 705
             VV   G D + +   N + + F+ D +  M R   GVR     + G      ++C   
Sbjct: 651 VSVVLTNGQDELVIANRNGRAIRFNEDAVRTMGRVSTGVRGIRLDEDGEDQAVGMVCIND 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E  T +  + + + +           RGG G    +   ++GK  +
Sbjct: 711 PEKETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLTDKTGKVAA 757



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 16/203 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G I+              + A+  +E D +   +  +  D +++ + +G+A  
Sbjct: 614 VVFCTAEGIIKKTCLEEYSRPRTNGVKAITIREEDRVVSVVLTNGQDELVIANRNGRAIR 673

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI 631
                + +       ++ +      +D     V         ++VVS +G        + 
Sbjct: 674 FNEDAVRTMGRVSTGVRGIRLDEDGEDQAVGMVCINDPEKETIMVVSDQGFGKRSAIEDY 733

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    +   +K   V  +      + + ++  +   L   +  +  M R   G
Sbjct: 734 RKTNRGGKGVKTLQLTDKTGKVAAIKSVTDDNDLMIINRSGITLRLKVADVRVMGRATQG 793

Query: 687 VRLQSY--KDGGISDVICFKICE 707
           V+L +   ++  IS V      +
Sbjct: 794 VKLINLTKRNDSISSVCVVTTED 816


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/750 (36%), Positives = 441/750 (58%), Gaps = 25/750 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  ++ E  +  +L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL  
Sbjct: 2   TKKIMNEVAEQKALTEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S A
Sbjct: 62  TAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGM
Sbjct: 122 AMRYTEARLSAYADVLLAELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNGATGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           A+ I  HN+ E+  A + L+DNP+  +  ++++I GPDFPT   I+   E+I   Y  G 
Sbjct: 182 ASDILPHNLTEVANACVHLLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAITTLYATGH 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA +  E        IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES  
Sbjct: 242 GSIKMRAIYNPE-----KQNIVITALPYQVSGAKVMEQIALQMQQKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   R+V+ P++  +D D LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL
Sbjct: 297 EHPTRLVIIPRSNRVDVDGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNLITILSEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +R  V+ RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR  + PK  +++RF+L+E
Sbjct: 357 IYRVSVVKRRLEYRLAKVLERIHVLEGLLIAYLNIDEVIAIIREHEHPKQGLIARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL ++LR L KLEE +I+ ELD L  E++ + S+L S ++  N +  EI + ++ 
Sbjct: 417 RQAEAILEMKLRHLAKLEEIKIRGELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G  R +   V +  +A  ++ ++  EPITVV+S  GW+R+ K H ++ S L +
Sbjct: 477 F------GDVRRSPIIVRQESQALKEEDILPNEPITVVLSKNGWVRAAKGHDINGSELSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD  K    A +  +I+   ++GK Y+LP  +L S RG GE +   ++        T 
Sbjct: 531 KAGDEFKAQATARSNQQIVFFDSEGKVYSLPGHSLPSARGQGEPLTGKLNPAEGILFETV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
              ++   +L+ S  G  F+ + S++    R GK  +K+ +  ++     +       VA
Sbjct: 591 VGGEAEQLVLLASDAGYGFVAKMSDLYVKNRNGKACVKLPAASRILPPRILPNQEELLVA 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
                 +LLIFSI ++PE+SRGKG +L S        ++  + DV      + LT + + 
Sbjct: 651 CATSVGRLLIFSIKELPELSRGKGNKLISIPATKTASREEYVIDVQVLSNQDVLT-VHAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            R +     DL  + G+RG  G+ +P+G  
Sbjct: 710 KRHFTLKGADLEHYKGERGRRGNRLPRGLQ 739


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 20/212 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            +     ++ + +G ++     + D S      A++F+ E D L  A      D +LL+S
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLIS 687

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+      GR     +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           ++P   R   GV+  S +      +I      
Sbjct: 807 EVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEH 838


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/771 (31%), Positives = 408/771 (52%), Gaps = 45/771 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    A KK
Sbjct: 5   EKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  +D++ VD    +++   EP V P++ PNLL NG+SGIAVGMAT++P H
Sbjct: 125 RMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A + N +I+I++L+EYI  PDFPTGGI +   + + E+++ GRG   +RA
Sbjct: 185 NLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGI-IYGYDGVREAFKTGRGRVVIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV  G  CIVVTE+PYQV    + E+ + L+   ++  L DI D++ +    +++
Sbjct: 244 KAHFEEV-NGRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L  G  PQ + L  ++  ++ HR +V++R
Sbjct: 303 ELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNG-RPQQLNLKDLIYHFVEHRHDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +      D   + I IIR  DKPK  +++ F LTE Q +AI
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLMTEFELTEIQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR + KL   Q K E + LLA+   ++ +L   +++   I  E+ E+K  +     
Sbjct: 422 LALQLRRINKLLILQTKEEYEQLLAQIIDLEDILARKERRTEIIKEELLEIKSKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + +I  + + + ISN G+I+              V   A 
Sbjct: 477 -GDERRSVIEYAGGDISI--EDIIPDDQVVITISNAGYIKRTSVNEYKTQARGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D ++          +L  +  GK + L    +  G     G AIQ LI++  +  
Sbjct: 534 ATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPEGGKNTKGRAIQNLINIEPDDL 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +             Y ++  +++ + KG        +     + G   + +  ++++   
Sbjct: 594 VKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYSRPRQNGIVAITIKEDDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG--- 708
              +G+  + +  ++ K + F  D++  + R G GVR  S  D    +VI     E    
Sbjct: 654 RLTSGNSQIMLAVKSGKAIRFPEDKVRAVGRSGSGVRGISL-DSDKDEVIGMIAIENPLE 712

Query: 709 LTWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
            T +  +   Y +               +  RGG G        ++G  ++
Sbjct: 713 ETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITEKTGNLVA 763



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 20/214 (9%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            L++         ++ + +G I+              + A+  KE D L  A       +
Sbjct: 602 DLKEKDYTNSHYVIMATKKGIIKKTSLEQYSRPRQNGIVAITIKEDDELLEARLTSGNSQ 661

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620
           I+L    GKA   P   + +    G  ++ +   +   +++     ++     +LVVS  
Sbjct: 662 IMLAVKSGKAIRFPEDKVRAVGRSGSGVRGISLDSDKDEVIGMIAIENPLEETVLVVSEN 721

Query: 621 GNAFIVEESE-------IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRK 669
           G        E            R GK    +S  EK   +V +      D + ++ ++  
Sbjct: 722 GYGKRTFIDEPETGEAVYRITNRGGKGVKTISITEKTGNLVAIKSVLEEDDLMIINKSGM 781

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            +   +  +  M R   GVRL + K       + 
Sbjct: 782 AIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVA 815


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/769 (33%), Positives = 389/769 (50%), Gaps = 60/769 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            ++           ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 4   SEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMH 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P +SI+ L+  I GPDFPTGGII+  R+ I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIIL-GRQGIRSA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y LGRG   +R +  ++ + +    IV++EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YHLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R   P++++  ++  + ++T F  NM  L     PQ+M L  +L 
Sbjct: 303 DESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVAL-DAGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P         
Sbjct: 362 LFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMS 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    I  E+  VK  F+       RRT   E    +     + 
Sbjct: 482 LAIEIADYLDILRSRARVQAIIKTELDAVKSEFATP-----RRTVIVE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          K      S +  ++ D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L        G+A+  ++ L+  + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVT 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +     R   GVR  +   G    VI   I        +   +Y +  
Sbjct: 714 DVRVFSGRTSMGVRGIALAKG--DRVISLSILHHFDATPAERAAYLKQS 760



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDH 660
           +  +   +L V+++G        E   + R GK        K+     +     V   D 
Sbjct: 799 MGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQ 858

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + +V +  +L+   ++ I   SR  KGVR+ +  D 
Sbjct: 859 IMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADD 894



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 74/274 (27%), Gaps = 26/274 (9%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             D G R TT   +   + +             +  +  G +R  K           + A
Sbjct: 625 PLDQGERITTIMPLPEDESSWAALD-------VMFATTSGTVRRNKLSDFVDVRRSGIIA 677

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +   EG+S+         D +LL +  G+    P  ++    G        I L     +
Sbjct: 678 MKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRV 737

Query: 603 VTA-----FVYDSTCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLK-VSSEEKMKL 652
           ++      F      +   +   G        E I    A     +     +S  E   +
Sbjct: 738 ISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYV 797

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC-FKICEGL 709
            +      V  V         S  +     RG KG+R     K G I  ++  F +    
Sbjct: 798 EMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSD 857

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             +  +              +  R   G  V   
Sbjct: 858 QIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNT 891


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 386/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +          +RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQRRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 20/212 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            +     ++ + +G ++     + D S      A++F+ E D L  A      D +LL+S
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLIS 687

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+      GR     +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQRRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           ++P   R   GV+  S +      +I      
Sbjct: 807 EVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEH 838


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/757 (35%), Positives = 436/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++  L  + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MNDAIDLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+ SR  I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + +E        IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKARAVYAIEN-----GEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D LM  +F  +D++  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPVRIVVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR + R+  +  R+ IL+ L++A+LNIDE+I IIR E+ PK  ++SRF 
Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENPKAELMSRFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +++ Q DAIL+L+LR L KLEE +I SE   L  E++K+  LL+S ++    I  E+ + 
Sbjct: 416 VSDIQADAILDLKLRHLAKLEEMKITSEQGELATERDKLQLLLSSDRRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   T  + +   E +TVV+S +GW+R  K H +D + 
Sbjct: 476 GETYGD-----DRRSPLVERSESKALTEHE-LSPVEAVTVVLSEKGWVRCAKGHDIDGNG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+     V     +
Sbjct: 590 EHVLLGDEDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPKLVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWID- 713
            +  +    ++L+FS++ +P++S+GKG ++        K+        + + EG +    
Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPTERAKNREELLTHLYVVPEGTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 20/212 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            +     ++ + +G ++     + D S      A++F+ E D L  A      D +LL+S
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLIS 687

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+      GR     +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           ++P   R   GV+  S +      +I      
Sbjct: 807 EVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEH 838


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/782 (30%), Positives = 398/782 (50%), Gaps = 53/782 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +  V +   +   Y+ Y++S I  RA+PD+RDGFKPVHRR+++ M+E+G      +K
Sbjct: 4   QGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD S+Y +LVRLAQP+  RYPL+ GQGNFG++DGD  AA RYTE
Sbjct: 64  KSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +L  +D++ VDF+  ++E   EPVV P++ PNLL NG+SGIAVGMAT++  
Sbjct: 124 ARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A I NP+I+IE+L+ +I  PDFPTGGI +     + E++  GRG   +R
Sbjct: 184 HNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGI-IYGYAGVREAFETGRGRIIIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E    G   IVVTEIPY V ++ LI+ IA L   K++  + +I DES      ++
Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++  ++  S +++ F +N   L  G  P+ + L  ++  ++ HR EV+ 
Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKG-RPRTLNLIDLISNFVEHRHEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDA 430
           RR+ F +     R E+L+GL+I   N+DE I IIRN   P        +RFSLTE Q   
Sbjct: 362 RRTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIARFSLTERQAAY 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ++ LRLR L  +E+ ++++E + LL   E +  +L   +++   I  E+ E+   F    
Sbjct: 422 VVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDILAKVERRMKIIEDELMELGSKFGDK- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E+  A +    +     + + + IS++G+I+              V    
Sbjct: 481 ----RRT---EIVYATEDMNPEDFYADDQMIITISHQGYIKRTALAEFKAQNRGGVGSKG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              K+ D ++    A   + +L  +  G+ Y L   ++  G     G A+Q ++++  + 
Sbjct: 534 GATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSKTSKGRAVQNMLNIEADD 593

Query: 601 DIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            I             Y+S   L+  +  G              + G   + +   +++  
Sbjct: 594 KINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPRQNGVNAITIRENDQVIQ 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708
           V    G+  + +     + + F   ++ EM R   GV   +       +V+         
Sbjct: 654 VRLTDGNSEIVIANRQGRAIRFHESKVREMGRTATGVNAMAIDKANGDEVVGMVAVADKT 713

Query: 709 LTWIDSAGRSYNRS------------------ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            T +  + + Y +                   E   +  +  RGG G        ++GK 
Sbjct: 714 ETVLVVSEKGYGKRSQLDELDENGNIKLDENGEPIAIYRVTNRGGKGVKTMNITEKTGKL 773

Query: 751 LS 752
           +S
Sbjct: 774 VS 775



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 33/212 (15%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  +  G I+     +        ++A+  +E D +           I++ +  G+A   
Sbjct: 616 VFCTQNGIIKKTCLEAYSRPRQNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRF 675

Query: 576 PAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIA 633
               +         +  + ID  +  ++V    V D T  +LVVS KG     +  E+  
Sbjct: 676 HESKVREMGRTATGVNAMAIDKANGDEVVGMVAVADKTETVLVVSEKGYGKRSQLDELDE 735

Query: 634 N------------------TRKGKTF--LKVSSE-EKMKLVVKVTG-DHVAVVGENRKLL 671
           N                   R GK    + ++ +  K+  +  V   + + ++ ++   +
Sbjct: 736 NGNIKLDENGEPIAIYRVTNRGGKGVKTMNITEKTGKLVSIKLVDDSNDIMIINKSGMAI 795

Query: 672 IFSIDQIPEMSRGK-GVRLQSY--KDGGISDV 700
              +  I  M R   GVRL +   ++  I+ V
Sbjct: 796 RMHVSDIRVMGRATQGVRLINLERRNDEIAAV 827


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/771 (32%), Positives = 417/771 (54%), Gaps = 27/771 (3%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL +   ++KSA+IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 61  GAYTSGLTYDKPYRKSAQIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSAAA RYTEAR+++++  +L+ +D+D VDF D Y+  + EPVV PS FPNLLANG
Sbjct: 121 SIDGDSAAAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 181 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 240 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L   + P+V+ L  
Sbjct: 300 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQ-PKVLNLKE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            L+ ++ H+ ++L R+++F ++       I++GL+IA  NID++I II+N    +  K  
Sbjct: 359 ALQIYIDHQFDILLRKTNFELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNT 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++++ L++ Q  AIL++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+
Sbjct: 419 LMTKYELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            ++ E+   F        RRT  C     +     + +I  E + +  S++G+       
Sbjct: 479 DQLDEIDHKFGDE-----RRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             +      V +  ++  E D ++  +   T   +L  +  GK Y + A  +   S    
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G     LI +  ++ +++    +   +      + KG    V+ SE       GK  +K+
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKL 651

Query: 645 SSEEKMKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  + +  V+K  GD    +G  +  L+ F  D +  M R  +GV    +K+     +  
Sbjct: 652 TENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGL 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +    +   +  +     +  RG  G +  K  P++G  +++
Sbjct: 712 SSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIINT 762



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++ +K+            A+   E DSL   +     + I +  + G     
Sbjct: 622 FFSTKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRF 681

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S     + +  +   N N +++          LL V  KG   + +  E     
Sbjct: 682 KEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTN 741

Query: 636 RKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R  K  + +    K   ++        + + ++    K++   + ++ E  R   GV+L 
Sbjct: 742 RGSKGVITIKVTPKTGNIINTQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLI 801

Query: 691 SYKD-GGISDVICFKICEGLT 710
           S  +   +  V  F + +  +
Sbjct: 802 SLNEKETLQSVAIFDVGQDDS 822


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 426/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYAQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RRSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLT-VHAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/793 (30%), Positives = 386/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+  A    + +P+ S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           EL+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 ELVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        Y+    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + + GD V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGG+G  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGLGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            E     ++ + +G ++     + D S      A++F+ E D L  A      D +LL+S
Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDDELIGAEQCSAGDDVLLIS 687

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+    R  G A   +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++P   R   GV+  S +      +I       +
Sbjct: 807 EVPAKGRSTMGVKFVSVRGKDAVSIIALNPEHAV 840


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/752 (37%), Positives = 439/752 (58%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTELARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKAKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +     +A +A  +  ++  EP+TVV+S +GWIR+ K H VD SA
Sbjct: 476 AKKFGDA------RRSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAPGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGD 659
           VT    +   + ++ SS G  F+     +I   + GK  L +S+   + +   V  V  D
Sbjct: 590 VTLASAEPETRFVLASSHGYGFVTRFENLIGRNKAGKAMLNLSAGSSVLIPSVVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 439/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +++E++ GPD+PT   I+     IV+ Y 
Sbjct: 181 VGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIVKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE        IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYAVEN-----GEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D +M  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLLQILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR E+ PK  ++SR++
Sbjct: 356 EWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDPKAELMSRYN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I  E+++ 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKTEQSELEAERDKLQLLLSSDRRMKTLIKKELKQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S +   T  + +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 AETYGD-----DRRSPLIERSESKALTEHE-LAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKAGDSFLCSATGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEIM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + D     L+ S  G  F+    ++I+  + GK  L + +  K+     V     +
Sbjct: 590 EHVLLGDEDKYYLLASDAGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWID- 713
            +  +    ++L+FS++ +P++S+GKG ++        K      +  + + E  +    
Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPGERAKAREELLIHLYVVPEDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 385/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+ EA    + +P  S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +L+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 DLVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        YD    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     ++++    + +  D V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGGVG  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + +G ++     + D S      A++F+ E D L  A      D +LL+S  G+A    A
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSA 697

Query: 578 GN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           G+      GR     +  +     ++     I+ + + +    +   +  G A     SE
Sbjct: 698 GDDQLRPMGRATS-GVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSE 756

Query: 631 IIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R G     + +S      +  +V    D +  +  + ++   ++ ++P   R   
Sbjct: 757 YRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTM 816

Query: 686 GVRLQSYKDGGISDVICFKICE 707
           GV+  S + G    +I      
Sbjct: 817 GVKFVSVRGGDAVSIIAVNPEH 838


>gi|332304966|ref|YP_004432817.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/755 (34%), Positives = 437/755 (57%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSQEIIINKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  + +LL ++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDIRKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-YEEAGD----IIITALPHQASGGKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R++ + RR  FR+  +  R+ IL+GL+IA+LNIDE+I IIR E+KPK V++  FS
Sbjct: 356 EWLVFRKDTVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQVLMDTFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI   
Sbjct: 416 LSDIQAEAILELKLRHLAKLEEMKIKGEQDALAKERDELQLILGSDRRLKTLIKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S +   T ++ +I  EP+TVV+S +GW R  K H VD+  
Sbjct: 476 AELYGD-----DRRSPIIERSESKALTEKE-LIPSEPVTVVLSEKGWARCAKGHDVDVVG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +  + + + T G+A++  A  L S R  GE I     +   + +
Sbjct: 530 LSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHVLPSARSQGEPITGRFSIVSGETV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +     + L+ S  G  F+ + +++I+  R GK +L +    K+     V   + D
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F +  +P + +GKG ++ S              +   + +G    + 
Sbjct: 650 WCLAISNEGRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVKVL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R    + +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRGMTLTADDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/804 (31%), Positives = 404/804 (50%), Gaps = 95/804 (11%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+ E+  A LA  DNP ISI
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEI 273
           E L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++  EE  + G   IV TEI
Sbjct: 181 EGLMEYITGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEI 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+R+IE+IAEL+  K++  + ++RDES ++   +     R  + ++++ ++F+ +
Sbjct: 240 PYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNT 299

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR+ F ++    R  IL+GL
Sbjct: 300 QLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGL 358

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVM------------------------------------ 417
            +A  NIDEII  I+    P                                        
Sbjct: 359 TVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPN 418

Query: 418 ------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                  S + L+  QV AIL LRL  L  LE+ ++ +E   +L +  ++ ++LN     
Sbjct: 419 RPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLL 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+ +V + +  +     RRT   E         ++ +I +E + + +S  G+ +
Sbjct: 479 MGVIREELAQVLQQYGDA-----RRTEIVESR---VDFCREDLIPEEQVVLTVSQTGYAK 530

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
           +         +      SA   K+ D ++  + A     +L  +  GK Y L    +   
Sbjct: 531 TQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQA 590

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           S    G  I  L+ L+  + +        +     + + ++ G    VE  +       G
Sbjct: 591 SRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY---- 692
              ++++ E+ +  V    G+  + +     K + F+   +  M R  KGVR        
Sbjct: 651 LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFAS 710

Query: 693 -----KDGGISD------------------VICFKICEGLTWIDSAGRSYNRSENDLLGW 729
                +D  + +                  V    + E    + ++   Y +        
Sbjct: 711 STLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFP 770

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
             KRGG G +  K   R+G+ + +
Sbjct: 771 TKKRGGKGVIAIKTSERNGELVGA 794



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 39/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           + +    A L      +     + +  G ++           S  L A+   E D+L   
Sbjct: 606 DATETVTAILPLTEFPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGV 665

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL------IDLNHNQ-------- 600
                  +I+L S +GKA      ++ +     + ++ +        L+           
Sbjct: 666 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 725

Query: 601 -------------DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-- 645
                         IV+  V   T ++L  S+ G       ++     R GK  + +   
Sbjct: 726 DDNDDSADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTS 785

Query: 646 --SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
             + E +  V       + ++ +   L+     ++    R  +GVRL    ++  +  V+
Sbjct: 786 ERNGELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVV 845

Query: 702 CF 703
             
Sbjct: 846 SI 847


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/746 (37%), Positives = 445/746 (59%), Gaps = 19/746 (2%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N   + E+ V+  SLR   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL 
Sbjct: 2   NDIVIGEDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLK 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
            G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  S 
Sbjct: 62  AGSKYKKSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSF 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+++T+ AE++L  + +  VD++  ++    EP   PS+ PN+L NGT+GIAVG
Sbjct: 122 AAMRYTESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN++E+  A + ++DNP+   E+LL+YI GPDFPT   I+  +  + + Y  G
Sbjct: 182 MATDIPQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  ++RA +  E+       IV+T +P+Q   ++++E+IA+ +  K++P++ D+RDES 
Sbjct: 242 RGSVKMRAVYTREDGD-----IVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESD 296

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ PK+  +D + LM  +F  +D+E  + +N+N++ +  +PQV  LD I+KEW
Sbjct: 297 HENPTRLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLDMIIKEW 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L +R   + RR   R+  +  R+ IL GLL+A+LNIDE+I IIR+ED+PK  ++ RF L+
Sbjct: 357 LEYRITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEPKQELIKRFGLS 416

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL L+LR L KLEE +IK E D L  E+++++  L S ++    +  EI    E
Sbjct: 417 DKQAEAILELKLRHLAKLEEMKIKGEQDELSKERDQLEKTLGSERRLKTLVKKEITADAE 476

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +      G  R +        +A  +  ++  +P+TVV+S +GWIR+ K H VD + L 
Sbjct: 477 TY------GDDRRSPIVSRDEAQALSEIDLMGADPVTVVMSEKGWIRAAKGHDVDGTGLQ 530

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GD   I  +A T  + + L T G+AY++    L   RG+GE +   I+L   Q I T
Sbjct: 531 YKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNIHGLPGARGYGEPVTGSINLASGQKIST 590

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHV 661
             +     + L+ S  G  FI +  ++++  + GK  L    ++ +   VKV+    D V
Sbjct: 591 MVIGQPKDQYLMASEAGYGFITQYEDMVSKNKAGKALLNKPDDKAIHSPVKVSDVEQDWV 650

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI-CEG-LTWIDSAGRSY 719
             V    +LL F +  +P M++GKG ++ +    G   +I   +  EG +  +++  R  
Sbjct: 651 VAVSNEGRLLTFPVADLPVMAKGKGNKIINLGTSGDEVLIGISLMKEGDMLIVNAGKRHV 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
               +DL  + G+RG  G+ +P+GF 
Sbjct: 711 KMKFSDLEHYQGERGRRGNKLPRGFQ 736


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/752 (37%), Positives = 438/752 (58%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTELARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFNKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D D LM  +F  +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKAKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +     +A +A  +  ++  EP+TVV+S +GWIR+ K H VD SA
Sbjct: 476 AKKFGDA------RRSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
           VT    +   + ++ SS G  F+     +I   + GK  L +SS   +    +V  V  D
Sbjct: 590 VTLASAEPDARFVLASSHGYGFVTRFENLIGRNKAGKAMLNLSSGSSVLTPSMVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/843 (31%), Positives = 407/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/769 (33%), Positives = 388/769 (50%), Gaps = 60/769 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D+          +++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI+  M 
Sbjct: 6   TDDRKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 65

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD++VR+AQ F  R PLI GQGNFG++D
Sbjct: 66  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 125

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTE+R+T++A+L+L  +D+D VD++D Y+    EP V P+KFPNLL NG  G
Sbjct: 126 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 185

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALI++P +SI+ L + I GPDFPTGGII+  R  I  +
Sbjct: 186 IAVGMATNIPPHNLGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIIL-GRAGIRLA 244

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 245 YHTGRGSIVMRGKVSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R    D+++  ++  + ++T F  NM  L     P +M L  +L 
Sbjct: 305 DESDRDGFRVVIELRRDAVADVVLNQLYRFTPLQTNFGANMVAL-DAGRPLLMNLKDLLT 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P         
Sbjct: 364 LFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMS 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 424 RDWPAQDVAAMITLIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    I  E+  VK  F+       RRT   E    +     + 
Sbjct: 484 LAVEIADYLEILRSRARVQTIIKDELAAVKAEFATP-----RRTEIIE---QEGEVEDED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          +      + +  +E D +     A T   +L 
Sbjct: 536 LIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLF 595

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L      G G+A+  ++ L   + I T               ++  
Sbjct: 596 FSSRGQVYKEKVWRLPLAPPNGRGKALINILPLEQGERINTIMPLPEDESSWAEFDVMFA 655

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           +++G     + S+ +   R G   +K+   E +  V   T  D V +     + + F++ 
Sbjct: 656 TTRGTVRRNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVT 715

Query: 677 QIPE-MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +    SR   GVR  +  +G    VI   I        +   +Y +  
Sbjct: 716 DVRVFQSRASMGVRGMALANG--DQVISLTILRHFDATPAERTTYLKQS 762



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 807 NEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARNGKLVASFPVEEEDQIMLVT 866

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDV 700
           +  +L+   +  I  + R  +GV    + +D  +  V
Sbjct: 867 DKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 903


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/850 (28%), Positives = 412/850 (48%), Gaps = 116/850 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+ ++    ++  VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM   G
Sbjct: 1   MSDISS-THHDIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   ++KSARIVG+V+G+ HPHGD ++YD++VR+AQ F  R PL+ GQGNFG++DGD 
Sbjct: 60  YDWTRPYRKSARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDP 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + AE +L+ +D++ VD+   Y+E   EP V P+++PNLL NG  GIAV
Sbjct: 120 PAAMRYTEARLAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A LA++DNP I+I++L+  + GPDFPTGG+I+  R  I E+Y  
Sbjct: 180 GMATNIPPHNLGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLIL-GRSGIREAYHT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +EE+ +  + IVVTEIPYQV KS+L+E+I E++  K +  + D+RDES
Sbjct: 239 GRGSVVMRGRAEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R    ++++  ++  + ++T F +NM  L+    P  M L  ++  ++
Sbjct: 299 DRDGVRVVVELKRDAIGEVVLNQLYRYTQLQTSFGVNMLALN-RGRPVQMNLRDVIFAFV 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------- 418
             R EV+ RR+ F +     R  +L GL++A  N+D +IA+IR+                
Sbjct: 358 EFREEVITRRTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAW 417

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ Q  AIL+LRL+ L  +E  ++  E  ++ A
Sbjct: 418 PATDVIDFIAIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAA 477

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +    +L S  +    +  E+ + +E ++       RRT   E+  ++     + +I 
Sbjct: 478 RIKDYLDILTSRPRLMGVLRDELLQTREAWAN-----DRRT---EIMESEFEHDIEDLIA 529

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S  G+I+          K      + +  ++ D +     A++   IL  ++
Sbjct: 530 REDMVVTVSYSGYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTS 589

Query: 569 DGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G+ Y L    L  G     G  +  L+ L   + I T     +         ++  ++ 
Sbjct: 590 RGQVYQLKTYRLPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAA 649

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIP 679
           G       S+     R GK  +K+   +++  V+    GD V +   + K + F +  + 
Sbjct: 650 GTIRRNALSDFTNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVR 709

Query: 680 EMSRGK---GVRLQSYKDGGISDVICFKICEGLTWIDSAG-------------------- 716
            + RG+   GVR      G   +V+   I   + +    G                    
Sbjct: 710 -LFRGRDSLGVRGIRLAKG--DEVVSMSILHHVDYESVDGEQNERDVYLRQAAWIRRGSG 766

Query: 717 ---------------------------------RSYNRSENDLLGWLGKRGGVGSLVPKG 743
                                            + Y +  +     +  RGG G      
Sbjct: 767 EGDEDASAPDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDV 826

Query: 744 FPRSGKFLSS 753
             ++G  +++
Sbjct: 827 TAKNGPVVTA 836



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 70/297 (23%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIR- 531
           +++  +         GR       +   +       M   E        +  +  G IR 
Sbjct: 595 QLKTYRLPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRR 654

Query: 532 -----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                    +     A+   EGD L   +  +  D +LL +  GKA      ++   RG 
Sbjct: 655 NALSDFTNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGR 714

Query: 587 GEAIQLLIDLNHNQDIVT------------------------------------------ 604
                  I L    ++V+                                          
Sbjct: 715 DSLGVRGIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAWIRRGSGEGDEDASA 774

Query: 605 ----------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKM 650
                       +  +   +L V+ KG        E     R G+      +   +   +
Sbjct: 775 PDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKNGPVV 834

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
                   D + +V +  +++   +D I   +R  +GV L  ++ G    V+   + 
Sbjct: 835 TAFPVTPTDQIMLVTDGGQIIRCPVDDIRVAARKTQGVVL--FRVGEDEKVVSVSLV 889



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 13/183 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH--FKEGDS 550
           G    +   +   D  ++     E++   V +    WIR       + ++        D 
Sbjct: 727 GDEVVSMSILHHVDYESVDGEQNERD---VYLRQAAWIRRGSGEGDEDASAPDVMLREDR 783

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                 A   + +L ++  G      A         G+ I  +     N  +VTAF    
Sbjct: 784 FIALGAAE--EFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKNGPVVTAFPVTP 841

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV----TGDHVAVV 664
           T ++++V+  G        +I    RK  G    +V  +EK+  V  V      D+V V 
Sbjct: 842 TDQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDDDNVEVA 901

Query: 665 GEN 667
            E 
Sbjct: 902 DEA 904


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 426/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  D+PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RLSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLT-VYAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 408/762 (53%), Gaps = 35/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+    ++KK
Sbjct: 5   EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYDS+VR+AQ +  RY ++ GQGNFG++DGDS AA RYTE 
Sbjct: 65  SARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +++D VD R  +++   EPVV P++ PNLL NG SGIAVGMAT++  H
Sbjct: 125 RMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN EI I++L++YI  PDFPTGGI +   + + +++  GRG   +RA
Sbjct: 185 NLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGI-IYGYDGVKDAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV +G  CI+V+EIPYQV K+ +I+K AEL+  K+I  + +IRDES  +   +++
Sbjct: 244 KSVIEEV-KGRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + ++T F +N   L  G  P+ + L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKG-RPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ F +   + R  IL+GL+IA  NIDE+IA I   +N D+ +  +++RF LTE Q  AI
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIARFELTEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D ++     +  +L +  +++  I  E+  +K+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDILANEPRRYEIIKGELAHIKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSAL 543
            G  R +  E +  D +   + MI    + V ISN G+         +            
Sbjct: 477 -GDDRRSVIEYAGGDMSI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          ++  +  GK + +    +  G     G A+Q LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKGRAMQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    V        Y ++  +++ + KG        +       G   + +   +++   
Sbjct: 594 VKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLT 710
              TGD  V +  ++ K + F   +   M R   GVR  + +      +    + +    
Sbjct: 654 KLTTGDSQVMLALKSGKSIRFEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESN 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + + +        +  RGG G        ++G  ++
Sbjct: 714 ILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVA 755



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 12/206 (5%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
            L+          ++ + +G ++              ++A+  KEGD L  A       +
Sbjct: 602 DLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPRTNGINAITIKEGDELLEAKLTTGDSQ 661

Query: 563 ILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           ++L    GK+           GR       + +  + ++ I    V D    +LVVS KG
Sbjct: 662 VMLALKSGKSIRFEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESNILVVSEKG 721

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ 677
                +  +     R GK    ++  EK   +V +      + + ++  +   +  +++ 
Sbjct: 722 FGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINRSGLTIRMAVED 781

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  M R   GVRL + KD      + 
Sbjct: 782 LRVMGRATQGVRLINIKDNDSIAAVA 807


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/783 (30%), Positives = 394/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   L  E ++ V L+  + E YL+YALS I ERA+PD+RDG KPVHRR+++AM + 
Sbjct: 30  DNTDYGLLTGERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDG 89

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 90  GYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDD 149

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  ++  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 150 PAAAMRYTECRMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIA 209

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ +     +D+P+ + E+LLE     I GPDFPTG  I+   + I 
Sbjct: 210 VGMATNIPPHNLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATIL-GHKGIE 268

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D
Sbjct: 269 QAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIAD 327

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 328 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 386

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+AH+ +V+ RR+++  +  + R  IL+G L A   IDE++A+IR+    +     
Sbjct: 387 FIRHWVAHQIDVVARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTG 446

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   + 
Sbjct: 447 LMDLLDVDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDILAKPERQRQIVG 506

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 507 DELDEIVSRYGDE-----RRTRILPYSG---EMNVEDLIAEENVVVTVTHAGFIKRTKAD 558

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 559 EYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGSRDSK 618

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       SE  +  + G   ++
Sbjct: 619 GQHVANLLQFAPDEHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVR 678

Query: 644 VSSE------EKMKLVVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V      L F    DQ+  M R   GV+   ++
Sbjct: 679 LMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAGVQGMKFR 738

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G    ++   +  G T           + +        L  R G G    +     G+ 
Sbjct: 739 EG--DSLLSMDVVWGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEGRGEL 796

Query: 751 LSS 753
           + +
Sbjct: 797 VGA 799



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 24/224 (10%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------------LSALHFKEGD 549
                +  L     E     V+ +  G ++  +    D            ++  + +  D
Sbjct: 630 PDEHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVRLMTDENGEHAD 689

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A   + TD I+L+S  G +    A N    R  G     +  +       +++  V
Sbjct: 690 ELIGANLCNDTDDIVLVSRKGMSLKFKADN-DQLRPMGRQTAGVQGMKFREGDSLLSMDV 748

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHV 661
               +   L VV+++G A     SE     R G     +       E +  +V    D V
Sbjct: 749 VWGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEGRGELVGALVVDESDQV 808

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
             + ++ K++  +++++    R   GV L     G   ++I   
Sbjct: 809 LAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKG--DEIISIA 850


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/857 (31%), Positives = 422/857 (49%), Gaps = 121/857 (14%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++ N   E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLNPHPERDVMAGIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +V+E +L  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A +ALIDNP+I+++K++E I GPDFPTGGII+     +  
Sbjct: 181 GIAVGMATNIPPHNLGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GHSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I+V+EIPYQV K+ +IEK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R +  D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKRDVIADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL +A  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPAADVAPLIKLIDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + I  E+  ++E F+       RRT F   S        +
Sbjct: 479 KIGVDITDYLHILASRSRIMSIIKDELNVLREAFATP-----RRTVFGFGSA---EMDCE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +      +T   +L
Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSTRGIVYKEKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI 675
            +++G     + S+ +   R GK  +K+  E+++  V   T  H V +     + + F +
Sbjct: 651 ATTRGTVRRNKLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYKDGGISDVICFKI---------------------------- 705
            ++     R   GVR  +  +     VI   I                            
Sbjct: 711 VEVRVFAGRNSVGVRGINLAND--DKVISMTILEHVEATSVERSAYIKRVINERRAAGSD 768

Query: 706 CEGLTWID---------------------------SAGRSYNRSENDLLGWLGKRGGVGS 738
            E L  +D                            +   Y +  +     +  RGG G 
Sbjct: 769 AEDLVTLDEEDEAVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGI 828

Query: 739 LV--PKGFPRSGKFLSS 753
               P      GK +++
Sbjct: 829 RATDPSKTAEIGKLVAA 845



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 28/236 (11%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S    + R      ++   D+    +   E+  + +  +    IR           
Sbjct: 659 RNKLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAG 718

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +SV +  ++    D +       T    +  ++  ++  +    +   R  G   + L+
Sbjct: 719 RNSVGVRGINLANDDKVIS----MTILEHVEATSVERSAYIKRV-INERRAAGSDAEDLV 773

Query: 595 DLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
            L+   + V   + +            LL VS  G        E   + R GK       
Sbjct: 774 TLDEEDEAVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDP 833

Query: 646 ----SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
                  K+     V   D + +V +  +L+   ++ I    R  KGV + +  +G
Sbjct: 834 SKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEG 889


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 449/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLERLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPMVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + SE+++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQRVTRI 744


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 413/768 (53%), Gaps = 32/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     ++ + + VSL   +   +L YA+S I  RA+PD+RDG KPV RRI++ M+E+G
Sbjct: 1   MTEIFDDIDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF  R  L+ G GNFG++DGD 
Sbjct: 61  VTPDKPHKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  +L+ +++D +DF+D Y++E+ EPVV P++FPNLL NG SGIAV
Sbjct: 121 AAAMRYTEARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A   L+ NP++++++L+E + GPDFPTG +++  +  I  +Y+ 
Sbjct: 181 GMATNIPPHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVM-GKSGIRRAYQT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VR++  +E++      IVVTEIPY V K+ L+++IA+L   KRI  +    DES
Sbjct: 240 GRGKILVRSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +++  + M+  F  NM  +    VP+++ L  IL ++L
Sbjct: 300 GREGMRIVIEVRRDTSASVVLNNLYKYTPMQVSFGFNMLAI-DKGVPKILNLKEILSKYL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            H+ EV+ RR+ +  +  + R  IL+GL IA  +IDEII IIR+    D  K  +++R+ 
Sbjct: 359 DHQVEVIRRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E  +LL   +++  +L S ++ +  I  E+ E+
Sbjct: 419 LSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERIFQIIEDELNEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F  +      R T   +         +++IE+E + + ++N+G+I+           
Sbjct: 479 RTRFGDA------RRTELHIGEI-TDIEDESLIEEEDVLIALTNKGYIKRMTQDEFSVQN 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  +   +GD ++  +   T D +L  +  GK Y      +        G  I  
Sbjct: 532 RGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGLPIIN 591

Query: 593 LIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           LI ++  +++           D    L  V+  G       SE       G   L +  +
Sbjct: 592 LIKIDKGEEVKAMISISDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLKED 651

Query: 648 EKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + +  V++  G+   ++G +    + F    +  M R   GVR    +D     V+   I
Sbjct: 652 DSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAMGRTATGVRGVRLRDDDY--VVGADI 709

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             EG   +    + Y +        +  RGG+G        +SGK   
Sbjct: 710 MVEGSDVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAG 757



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 13/217 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                 ++     + E     ++  G ++   S          L AL+ KE DSL   + 
Sbjct: 600 EVKAMISISDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLKEDDSLVAVME 659

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
                 I++ + +G A +    ++ +       ++  + L  +  +V A +      +LV
Sbjct: 660 TDGNKPIIIGTHEGNAISFLESDVRAMGRTATGVRG-VRLRDDDYVVGADIMVEGSDVLV 718

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFL--KVSSEE-KMKLVVKVTG-DHVAVVGENRKLLI 672
           ++ KG        +     R G       +S +  K+  ++ V G + + V+      + 
Sbjct: 719 ITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAGLLVVEGHEDILVMTNQGVAIR 778

Query: 673 FSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICE 707
             ++ I + SR   GVR+     +  +S +      E
Sbjct: 779 MKVEGISQSSRATLGVRMIRLDQEAVVSSITTILESE 815


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300696|ref|YP_004442617.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/766 (30%), Positives = 404/766 (52%), Gaps = 40/766 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K
Sbjct: 6   DRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR VG+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+
Sbjct: 66  CARAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  H
Sbjct: 126 RLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N+ E   A +A ID   EI++++L++Y+  PDFPTGG+ +   E + E++R GRG   +R
Sbjct: 186 NLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGV-IYGYEGVKEAFRTGRGRIVIR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE   G   IV+ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+     ++
Sbjct: 245 GKADIEEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  SD+E+ F +N   L     P+++ L  ++  ++ HR +V+ 
Sbjct: 304 IDIKKDANAGVVLNYLYKYSDLESYFSVNNIALV-HGRPRLLNLKDLIGHFVDHRHDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M   +  F+L+E Q  A
Sbjct: 363 RRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR L KL+  +++ E + L    + ++  L+    +   I  E RE+ + +    
Sbjct: 423 IVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIDKYGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  A +    +     E + + IS+ G+I+              V +  
Sbjct: 482 ----RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A     ++L +  G+ Y L    +  G     G  IQ L+DL+   
Sbjct: 535 ADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEEN 594

Query: 601 DIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +              + +T  L+  + +G       +      + G   + +  ++++ 
Sbjct: 595 RVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRGDDQVV 654

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI---- 705
            V    G+  + +   N + + F+  ++  M R   GVR     D     V+   +    
Sbjct: 655 SVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDDDPNDKVVGMVVHRLK 714

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               T +  + + Y +        + KRG  G        ++G+ +
Sbjct: 715 NSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVTDKTGQLI 760



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 71/201 (35%), Gaps = 15/201 (7%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           K              V  + +G I+              + A++ +  D +     ++  
Sbjct: 603 KDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRGDDQVVSVALSNGN 662

Query: 561 DRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLV 616
             I L + +G+        +   GR       + +D + N  +V   V+   +S   +LV
Sbjct: 663 CEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDDDPNDKVVGMVVHRLKNSDETILV 722

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLI 672
           +S KG        +     R  K    ++  +K   +  +  V  D  + ++ ++   + 
Sbjct: 723 ISEKGYGKRSLIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIR 782

Query: 673 FSIDQIPEMSRGK-GVRLQSY 692
            S++Q+  M R   GV++   
Sbjct: 783 LSMEQVRVMGRATQGVKMIDL 803


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/764 (32%), Positives = 396/764 (51%), Gaps = 35/764 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S  N   +  ++  +L   ++  +L+YA+S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MSEQN---DARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                  KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R+ L+ G GNFG++DGD 
Sbjct: 58  NTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDG 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+++VA  +++ +++D V+F   Y+ E+ EP V P++FPNLL NG +GIAV
Sbjct: 118 AAAMRYTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP+HN+ E+  A   L++NP  +   L+E + GPDFPTGGI++  +  I  +Y  
Sbjct: 178 GMATNIPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVM-GKSGIRRAYET 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +E+   G   I+VTE+PY V K+RLIE+I+EL   KRI  +  IRDES
Sbjct: 237 GRGRVTVRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +     R     +++ +++  + ++T F  NM  ++ G  PQ M L  IL+ +L
Sbjct: 297 DRDGLRISIDVRRDASASVILNNLYKETLLQTNFSFNMLAIN-GGKPQTMSLKAILEAYL 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422
            H+REV+ RR++F +Q    R  IL+GL IA  +ID II IIR+    ++ K  ++  ++
Sbjct: 356 THQREVIRRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLIDGYA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL++RL  L  LE  +I+ E   L+     +  +L   ++    I  E+ E+
Sbjct: 416 LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKDILAHQERVDQLIYDELLEI 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +  F      G  R T  +V        +  +  +E + + ++  G+I+           
Sbjct: 476 QTKF------GDERRTELQVGDVTTLEDEDLIE-EEDVIITLTRNGYIKRVPQAEFKAQN 528

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                +  ++  + D +   +   T D +L  +  GK Y +    +     +  G  +  
Sbjct: 529 RGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVN 588

Query: 593 LIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           L+    ++ I T         DS   L  V+  G       SE       G   L +  +
Sbjct: 589 LLHFEGDEKIQTVINVRGEATDSHDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDD 648

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFK 704
           +++  V    G   V +  ++   + F    +  M R   GVR    ++   +       
Sbjct: 649 DEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIMGRAAAGVRGIRLRENDLVIGADVVD 708

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             E +  I    + Y +        +  RGG G        ++G
Sbjct: 709 DTENVLVIT--EKGYGKQTPATEYPIKGRGGKGIKTANITDKNG 750



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 18/216 (8%)

Query: 513 AMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
              +       ++  G ++           +  L AL   + D +        T  +L+ 
Sbjct: 607 EATDSHDYLFFVTRLGVVKRTAVSEFANIRTNGLKALTLHDDDEVLSVQITDGTQSVLIA 666

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + DG  Y++        R  G A   +  I L  N  ++ A V D T  +LV++ KG   
Sbjct: 667 TKDG--YSVRFVE-ADVRIMGRAAAGVRGIRLRENDLVIGADVVDDTENVLVITEKGYGK 723

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
               +E     R GK     +  +K   +  +  V GD  + V      ++ F++  + +
Sbjct: 724 QTPATEYPIKGRGGKGIKTANITDKNGVLAGMTIVRGDEDIMVTTTQGVMIRFAVASVSQ 783

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             R   GVRL   +DG  + V      E  T  D +
Sbjct: 784 TGRATLGVRLIRLEDG--AKVATLAKVEHETTEDVS 817


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/774 (32%), Positives = 387/774 (50%), Gaps = 49/774 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +++   L+E YL YA+S I  RA+PD RDG KP  RRI+ AM ++GL  G +  K A I
Sbjct: 18  PLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAMLDLGLTPGGSTSKCAGI 77

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGE + + HPHGD S+Y +L R+AQ +  R+ L++GQGNFG+I G   AA RYTEA+++ 
Sbjct: 78  VGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSIHGLPPAAMRYTEAKLSP 137

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +L  +  D VDF+ +Y+E+  EP V P++FPNLL NG+ GIAVGMATSIP HN+ E
Sbjct: 138 VAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSGGIAVGMATSIPPHNLGE 197

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C+A +ALIDNP I  E L+E + GPDFPTGG+I   R  I E+Y  GRG   +RA+  V
Sbjct: 198 VCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVIC-GRMGIREAYLTGRGRIVLRAKHVV 256

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317
           EE   G   IV TEIPYQ+ K  L++K+ +L+   RI  + D+ DES       ++    
Sbjct: 257 EETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVVDESDRRQPVRIVVKLK 316

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R+ DP++++  ++  S ++  F + M  L  G  P+ + L  +LK +L HR  V+ RR++
Sbjct: 317 RNEDPNVILNQLYQYSPLQDTFGVIMLALVDG-RPKTLTLRELLKIYLDHRANVIRRRTA 375

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------------KP 415
           F ++    R  +++GLLIA   IDEII IIR+   P                       P
Sbjct: 376 FLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMGMAVGPDVMRRALNDP 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              +   LT NQ DAIL +RL+ L  LE  ++ +E   L A     + +L    +    I
Sbjct: 436 EAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRELRAAIADAEDILAREVRVREII 495

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             ++ E+K  ++       RRT   +         ++A+I +E + V I++ G+I+ L  
Sbjct: 496 KADLEELKRKYADP-----RRTVISDEELGSYD--KEALIREEYMVVTITDGGYIKRLPP 548

Query: 536 HSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
            +                KEGD L     A T D +L  +  G  + L   ++       
Sbjct: 549 STYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLIHWLKVYDVPIAPRTA 608

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G AI  L++L   + I        +     L + + +G       S      R G   L
Sbjct: 609 TGRAIVNLLELREGERITGVIPVRRFPDNEFLFMATRRGTVKKTPLSAYSRPQRGGIIAL 668

Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGIS 698
            +   +++  V +   GDHV +   N   + F    +  M R   GVR    +  D  + 
Sbjct: 669 GLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPMGRPACGVRGIRLEGDDQVVG 728

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            V+     +  + +      + +           RGG G +  K   R+G  ++
Sbjct: 729 MVVANGPDDPASLLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIKTTERNGPVVA 782



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 87/250 (34%), Gaps = 22/250 (8%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGWIRSLKSH 536
           ++      +  T  GR      E+   ++ T  +            + + RG ++     
Sbjct: 596 LKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFPDNEFLFMATRRGTVKKTPLS 655

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +        + AL  +EGD L         D ++L + +G A      ++   R  G   
Sbjct: 656 AYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDV---RPMGRPA 712

Query: 591 QLL--IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             +  I L  +  +V   V    D    LL V S G       SE  A  R GK  + + 
Sbjct: 713 CGVRGIRLEGDDQVVGMVVANGPDDPASLLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIK 772

Query: 646 SEEKMKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + E+   VV        D V +  E   L+   + +  ++ R  +GVRL    +G    V
Sbjct: 773 TTERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRV-V 831

Query: 701 ICFKICEGLT 710
              K+ E   
Sbjct: 832 ALAKLPESEL 841


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/843 (31%), Positives = 406/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A++   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R     +G    VI   I                              + +  +      
Sbjct: 722 RGIKLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  +   EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGIKLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/773 (31%), Positives = 401/773 (51%), Gaps = 38/773 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  +NS       +K+  L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAEEEQTNS------RIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYG 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 55  MNELGVTPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEAR++++A  +L+ +++D +DF++ Y+  D EPVV P++FPNLL NG 
Sbjct: 115 VDGDPAAAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGA 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E+      L+ NP+++  +L+E I GPDFPTG I++  +  I 
Sbjct: 175 NGIAVGMATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVM-GKSGIR 233

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VRA+  +E    G   I+VTE+PY V K++LIE+IAEL   KRI  +  
Sbjct: 234 KAYETGKGVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITG 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DES ++   +     R +   +++ +++  + M+T F  NM  +  G  P+++ L  +
Sbjct: 294 VNDESDQEGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDG-RPKLLSLKDM 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L H+++V+ RR+ F ++    R  IL+GL IA  +ID II IIR+ +     K  +
Sbjct: 353 LVAYLDHQQKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  ++L++ Q  AIL++RL  L  LE  +I+ E   LL        +L   ++    I  
Sbjct: 413 MVDYALSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIADFQDILAKPERIDEIIYT 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ EV+  +      G  R T  ++     +   + +IE+E I V +++ G+I+      
Sbjct: 473 ELLEVQSKY------GDERRTELQIGDV-TSIEDEDLIEEEDIIVSLTHAGYIKRMLQSE 525

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                     +  +   + D +   +   T D +L  +  GK Y +    +        G
Sbjct: 526 FRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGYEVPEYGRTAKG 585

Query: 588 EAIQLLIDLNHNQDIVTAF-----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             +  L+ +   + I T         +S+  L   + +G       +E       G   +
Sbjct: 586 IPVVNLLGIESGESIQTVINVRGDASESSDYLFFTTRQGVVKRTPVNEFGNIRAHGLKAI 645

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISD 699
            +   +++  V+   GD   ++G +    + F+ + +  M R   GVR  + + D  +  
Sbjct: 646 NLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLRPDDYVVG 705

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                    +  I    + Y +        +  RGG G    +   ++G    
Sbjct: 706 AQVLIDNGHVLIIT--EKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKNGPLAG 756



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566
              E        + +G ++    +         L A++  +GD L   L       I++ 
Sbjct: 609 DASESSDYLFFTTRQGVVKRTPVNEFGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIG 668

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  G A +  +  + S       ++  I L  +  +V A V      +L+++ KG     
Sbjct: 669 THGGYAVSFNSEAVRSMGRSAAGVRG-ITLRPDDYVVGAQVLIDNGHVLIITEKGYGKQT 727

Query: 627 EESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
              +     R GK        EK   +  +  V G + + +      ++ F++D I E  
Sbjct: 728 PVDQYPIKGRGGKGIKTAQVTEKNGPLAGLKVVDGSEDIMLTTNKGVMIRFTVDSISETG 787

Query: 683 RGK-GVRLQSYKDG-------GISDVICFKICEGLTWIDSA 715
           R   GVR+    D         +  V+  ++ +  T +  A
Sbjct: 788 RATQGVRVIRLDDDSAVATFAKVEHVVAEEVDDEDTDLSEA 828



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 57/174 (32%), Gaps = 13/174 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSL 551
             +   D+          + I +  ++ G+        +RS+   +  +  +  +  D +
Sbjct: 645 INLHDGDELINVLVTDGDQNIIIG-THGGYAVSFNSEAVRSMGRSAAGVRGITLRPDDYV 703

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A        +L+++  G     P          G+ I+       N  +    V D +
Sbjct: 704 VGAQVLIDNGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKNGPLAGLKVVDGS 763

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVAV 663
             +++ ++KG         I    R   G   +++  +  +    KV  +HV  
Sbjct: 764 EDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKV--EHVVA 815


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/758 (35%), Positives = 435/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + K++E++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDISKIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E        +V+T +P+Q    +++E++A  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYKIEN-----GEVVITALPHQASGGKILEQVAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRIV+ P++  +D D LM  +F  +D+E  F +N+N+L +   PQV  L  IL 
Sbjct: 296 SDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR   R+  I  R+ IL+ L+ A+LNIDE+I IIR ED PK  ++SRF+
Sbjct: 356 EWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNPKAELMSRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LTDIQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSDRRMKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  +Q +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGD-----DRRSPLVERGE-SKALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+ +   V     +
Sbjct: 590 EHVLLGDDDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +  +    ++L+FS++ +P++S+GKG ++          ++  +S +      +    +
Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSREELLSHLHVVP-EDTAVTL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/793 (30%), Positives = 386/793 (48%), Gaps = 53/793 (6%)

Query: 1   MGVDNISNSNTLVEE---------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFK 51
           M  D   +     +           ++ V +R  ++  YL YA+S I  RA+PD+RDG K
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AM + G      + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RY L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + GQGNFG+   D AAA RYTE +M  +A  +++ +D+D VDF+  Y+ +++EPVV PS+
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFP 227
           FPNLL NG+SGIAVGMAT+IP+HN++E+  A    + +P+ S E+L    +E I GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
            G +IV  R+ I ++YR GRG   +RA   +EE  +G  C+VVTE+PY      L  KIA
Sbjct: 241 GGALIV-GRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIA 299

Query: 288 ELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           EL+ + RI  + DIRD+ SA   + ++    R   P ++M +++  + ++  F  NM  L
Sbjct: 300 ELVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLAL 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               VP+ + LD  +  W+ H+ EV+ RR+ +R+   ++   I + L+ A   +DE+IA+
Sbjct: 360 VDN-VPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIAL 418

Query: 407 IRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           IR     +        L    E Q  AIL+++LR L  LE  +I   L+ L        +
Sbjct: 419 IRRSPNTEAASTGLQELLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +Q   I+ E+ E+ + +        RRT       AD    ++  I  + + V 
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDE-----RRTRII---AADGDFSEEDFIPDDDVVVT 530

Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           I+  G+         R  K     +     +  D +           IL  +  G+ Y  
Sbjct: 531 ITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRT 590

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE 630
               L        G  +  L+    ++ I        Y+    LL+ + KG         
Sbjct: 591 KVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKGMVKKTALKA 650

Query: 631 IIANTRKGKTFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRGK- 685
             ++ + G   +     +E++    + + GD V ++    + + FS   DQ+  M R   
Sbjct: 651 YDSSRQAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATS 710

Query: 686 GVRLQSYKDGGISDVICFKI------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           GV    ++  G  +++   I       +      + G  Y +           RGG+G  
Sbjct: 711 GVTGMKFR--GDDELLSMSIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGLGIK 768

Query: 740 VPKGFPRSGKFLS 752
                   G  + 
Sbjct: 769 AMALSEERGSLVG 781



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFK-EGDSLKIALHAHTTDRILLLS 567
            E     ++ + +G ++     + D S      A++F+ E + L  A      D +LL+S
Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDEELIGAEQCSAGDDVLLIS 687

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---HNQ----DIVTAFVYDSTCKLLVVSSK 620
             G+A    AG+    R  G A   +  +     ++     I+ + + +    +   +  
Sbjct: 688 RKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSDMPEDDRFVFTATGG 746

Query: 621 GNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     SE     R G     + +S      +  +V    D +  +  + ++   ++ 
Sbjct: 747 GYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVS 806

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           ++P   R   GV+  S +      +I       +
Sbjct: 807 EVPAKGRSTMGVKFVSVRGKDAVSIIALNPEHAV 840


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/844 (29%), Positives = 405/844 (47%), Gaps = 119/844 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  ARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R
Sbjct: 195 LGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 254 AHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R EV+ RR
Sbjct: 314 LKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREEVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIR 432

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+ +  E +    +L+
Sbjct: 433 LIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I +E + V +S+
Sbjct: 493 SRLRIMQIVKDELTSVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y     
Sbjct: 545 LGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 605 RLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-G 686
            +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   G
Sbjct: 665 FVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIG 724

Query: 687 VRLQSYKDGGISDVICFKI----------------------------CEGLTWI------ 712
           VR  S  DG    +I   I                             E +  +      
Sbjct: 725 VRGISLGDG--DRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEVTN 782

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 + + + +  +        RGG G        ++   G+
Sbjct: 783 GGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRAT-DTSKTAEIGE 841

Query: 750 FLSS 753
            +++
Sbjct: 842 LVAA 845



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 83/303 (27%), Gaps = 73/303 (24%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
                 G+       +   ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRNKLSDFVQV 668

Query: 539 ---DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                 A+  +E GD +         D ++L +  G+    P  ++    G        I
Sbjct: 669 NRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIGVRGI 728

Query: 595 DLNHNQDIVT-----------------------------------AFVYDS--------- 610
            L     I++                                     V +          
Sbjct: 729 SLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEVTNGGELTN 788

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV 656
                       +L VS KG        +   + R GK              ++     +
Sbjct: 789 ERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPI 848

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEGLTWID 713
              D + +V +  +L+   ++ I   SR  KGV +  + KD  +  V      +G   I+
Sbjct: 849 EHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISEPDGDEEIE 908

Query: 714 SAG 716
           + G
Sbjct: 909 AVG 911


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/757 (34%), Positives = 425/757 (56%), Gaps = 31/757 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   DNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + NPEISIE+L + + GPDFPTG  I+  +  I ++Y+ GRG  ++R
Sbjct: 184 HNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYIL-GKSGIKDAYQTGRGKVKLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I+V+EIPYQV KSRLIEKIA+L+  K+I  + DIRDES      ++
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +ET F +    L  G +PQV+ L  +++ ++ H++EV+ 
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDG-IPQVLNLKELIEYYIDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+SF +     R  I++GL+IA  NIDEII IIR+    D+ K +   +F+LT+ Q  A
Sbjct: 362 RRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFNLTDKQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L      + S+LNS +     I  E+ E+K+ FS   
Sbjct: 422 ILDMQLKRLSGLEIDKLNAENKELEETISYLLSILNSEENLIKLIISEMEEIKDKFSD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+        +     + +IEKE + + ++N G+I+                ++A
Sbjct: 480 ---DRRSKII---PDEGEIDIEELIEKEDVLLTLTNDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
            + KEGD +K     +T + +L  ++ GK Y+L    +   S +  G AI  +++L   +
Sbjct: 534 GNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRGTAIINILNLESGE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I         +   ++++ +  G     E        + G   + +   +K+  V ++ 
Sbjct: 594 RITEMMTLSELNEDSQIVLQTKDGTIKKTEAENFTNIRKNGIIAISLKDGDKLISVRQID 653

Query: 658 GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
            +   ++   + + I F+   +  M R  +GVR     +G   +V+   I    T  +  
Sbjct: 654 KEEELIISTKKGMTIQFNSQDLRSMGRIAQGVRAIKLAEG--DEVVSMNIKGDETYLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               + +  +        RGG G    K   ++GK +
Sbjct: 712 TENGFGKKTSFNNFKNQNRGGKGVKCHKVTDKTGKVV 748



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 18/236 (7%)

Query: 484 EIFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +       + R T        E        +  + + ++   V+ +  G I+  ++ +
Sbjct: 567 KTYEVPEGSRQSRGTAIINILNLESGERITEMMTLSELNEDSQIVLQTKDGTIKKTEAEN 626

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   + A+  K+GD L         + +++ +  G      + +L S     + ++
Sbjct: 627 FTNIRKNGIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSMGRIAQGVR 686

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             I L    ++V+  +      LLVV+  G       +      R GK        +K  
Sbjct: 687 A-IKLAEGDEVVSMNIKGDETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVTDKTG 745

Query: 652 LVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            VV        + + +V  +  ++  S+  I  M R   GV+L++  + G   V  
Sbjct: 746 KVVDTLPVDLDNDIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSV 801


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/816 (30%), Positives = 405/816 (49%), Gaps = 85/816 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGGI +  R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGI-IYGRSGIVDAYRTGKGRLHI 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDS 418

Query: 417 -----------------------------------------MVSRFSLTENQVDAILNLR 435
                                                      + + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE+ ++  E  +LL +  +++S+L    +    I  E+ E+ E F        R
Sbjct: 479 LHRLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDE-----R 533

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   +         ++ +I ++ + + +S  G+ ++         K      SA   KE
Sbjct: 534 RTDIVDSR---TDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKE 590

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D +   +   T   +L  + +G+ ++L    +   S    G  +  +I L  ++ + T 
Sbjct: 591 DDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTI 650

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      +  +   ++ G    VE S+       G   + +   +K+       G+
Sbjct: 651 LPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGE 710

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +   + K + F  +    M R  KGVR     +      +     +    + +   
Sbjct: 711 QQVMLFASSGKAIRFDENDARVMGRTAKGVRGMRIANDEFIKSLVVIEEDVQEILIACEN 770

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  K   R+G  + +
Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRA 806



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 79/228 (34%), Gaps = 15/228 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E+          +           +  G ++           S  L A+  +EGD L  A
Sbjct: 645 EIVTTILPIPNLSEEIDSHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSA 704

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CK 613
              +   +++L ++ GKA      +        + ++ +  + +++ I +  V +    +
Sbjct: 705 RITNGEQQVMLFASSGKAIRFDENDARVMGRTAKGVRGM-RIANDEFIKSLVVIEEDVQE 763

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L+    G        E  A  R G   + + + E+   +V+ T     D + ++     
Sbjct: 764 ILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGT 823

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTWIDS 714
           L+   + Q+    R  +GV L      +  ++        E    +++
Sbjct: 824 LVRTPVAQVATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEA 871


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/789 (31%), Positives = 387/789 (49%), Gaps = 59/789 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F
Sbjct: 3   AQERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA RYT
Sbjct: 63  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYT 122

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +LQ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+I
Sbjct: 123 ESRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+    +ALI NPEIS  +L+ +I GPDFPTGG ++ S   I ++Y  G+G   
Sbjct: 183 PPHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGS-AGIRDAYLTGKGSIT 241

Query: 252 VRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    ++ +          I++TE+PYQ  K+ LIE+IAE++  KR+  + DIRDES  
Sbjct: 242 MRGVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDR 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ +++  + +++ F  NM  L  G  P ++ L   L+ +L  
Sbjct: 302 DGMRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGE-PVLLTLKRSLEVFLDF 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  +L+GLLIA  N+D II +IR        K  ++  + L+
Sbjct: 361 RIETIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLS 420

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E  +L    E    +L   ++    I  E+ ++++
Sbjct: 421 EVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQ 480

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            F +      RRTT  E    D       +I  E   ++++ +G+I+             
Sbjct: 481 RFQEP-----RRTTLLEA---DGELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRG 532

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
           +   +    K+ DS++  L     D IL  S  G  Y LPA  +   S    G  I  L+
Sbjct: 533 TRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLL 592

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      +     L++++  G       S        G   + +S  ++++
Sbjct: 593 PIPREERITSIVPVSAFSDDEYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQLR 652

Query: 652 LVVKVT-GDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGG----------- 696
            V      D + +       + F  S D +  + R  +GVR  S + G            
Sbjct: 653 WVRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPAS 712

Query: 697 -------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                          D +      G   +    +   +        L KR G+G    K 
Sbjct: 713 LTANMTETGDEDEADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKF 772

Query: 744 FPRSGKFLS 752
             +  + +S
Sbjct: 773 RSKQDELVS 781



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 85/254 (33%), Gaps = 37/254 (14%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
                   + +  +    +   V+++  G+I+           S  L A+   EGD L+ 
Sbjct: 594 IPREERITSIVPVSAFSDDEYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQLRW 653

Query: 554 ALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTA------- 605
              A   D IL+ S  G      A  + L   G        + L     +++        
Sbjct: 654 VRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASL 713

Query: 606 ------------------FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVS 645
                              V      +LVV+++G    V   +     R G     +K  
Sbjct: 714 TANMTETGDEDEADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFR 773

Query: 646 SE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           S+ +++  +  V +GD + ++ +   ++  + D IP+ SR   GVR+Q      +   + 
Sbjct: 774 SKQDELVSLRIVESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVA 833

Query: 703 FKICEGLTWIDSAG 716
                     +++ 
Sbjct: 834 LVPPGEEELDETSE 847


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/779 (30%), Positives = 392/779 (50%), Gaps = 42/779 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I     +   +V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G
Sbjct: 9   IPELPEVHHGHVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGG 68

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F K AR+VG+V+GK HPHGD ++YD++VRL Q +  RYPL++GQGNFG+   D 
Sbjct: 69  YRPDRGFSKCARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGNDP 128

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM  +A  +++ +D+D VDF+D Y+ E+ EPVV P++FPNLL NG++GIAV
Sbjct: 129 AAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIAV 188

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVE 241
           GMAT+IP HN++E+ E     + +PE S E+    L++ + GPDFPTG  I+   + I E
Sbjct: 189 GMATNIPPHNLREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQIL-GTKGIEE 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L  KIA+L+   R+  + DI
Sbjct: 248 AYRTGRGSITMRAVVNVEEI-QNRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIADI 306

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ + LD  
Sbjct: 307 RDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSLDAF 365

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           ++ W  H+ EV+ RR+++ +   ++R+ IL+G L A   +D++IA+IR   + D+ +  +
Sbjct: 366 IRHWTTHQMEVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAGL 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E Q +AILNL+LR L  LE  +I  E   + AE   +  +L   ++Q + +  
Sbjct: 426 MELLEIDEIQANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDILAKPERQRSIVGE 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-------- 529
           E+  + E +        RRT        D     + +I +E + V I+  G+        
Sbjct: 486 ELDGIVEKYGDE-----RRTHIL---PYDGDMSMEDLIPEEEVVVTITRGGYAKRTRSDA 537

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHG 587
            R  K     +     +E D +       T   +L  +  G+ Y      L  G     G
Sbjct: 538 YRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNFGRVYRAKGYELPEGSRDSKG 597

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + +  ++     + I        YD+   L++ + +G        E  +    G   + +
Sbjct: 598 QHVANMLAFQPGEHIAQVLDLRDYDAAEYLVLATRRGLVKKTRLQEYNSPRSAGLIAINL 657

Query: 645 SSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDG 695
             +     +++   + V     + +V    + + F      +  + R   GV    +++G
Sbjct: 658 REDEDGQPDELIGAMLVDSSQDLILVSRKGQSIRFPAADESLRPLGRATSGVTGMKFREG 717

Query: 696 G-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      +    L  +  +G +     +        RGG+G  V       G  + +
Sbjct: 718 DEVLTAAVVREDAFLFTVTESGLAKRTELSVDNYRQQGRGGLGIRVANLPEERGDLVGA 776



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 25/203 (12%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEG-----DSLKIALHAHTTDRILLLSTDG 570
           V+ + RG ++  +           L A++ +E      D L  A+   ++  ++L+S  G
Sbjct: 628 VLATRRGLVKKTRLQEYNSPRSAGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKG 687

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           ++   PA +  S R  G A   +  +      +++TA V      L  V+  G A   E 
Sbjct: 688 QSIRFPAAD-ESLRPLGRATSGVTGMKFREGDEVLTAAVVREDAFLFTVTESGLAKRTEL 746

Query: 629 SEIIANTRK------GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
           S  + N R+      G     +     + +  +V    D V V+ E  K++  ++ ++  
Sbjct: 747 S--VDNYRQQGRGGLGIRVANLPEERGDLVGALVVDDDDEVLVIMERGKIVRSAVAEVRA 804

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
             R   GV       G     + 
Sbjct: 805 TGRTTQGVTFAKPDKGDRIIAVA 827


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/746 (37%), Positives = 427/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 479 ---GDLRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLT-VHAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/756 (34%), Positives = 438/756 (57%), Gaps = 25/756 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S    + ++ ++ + +R   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSQEIIINKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +E++L  + +  VD++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  + +LLE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIRKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  EE G     I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVY-YEEAGD----IIITALPHQASGGKVLEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D + LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R++ + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR EDKPK V++  FS
Sbjct: 356 EWLIFRKDTVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPKLVLMDTFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++++  +L S ++    I  EI   
Sbjct: 416 LSDIQAEAILELKLRHLAKLEEMKIKGEQDELAKERDELQLILGSDRRLKTLIKKEILAA 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E++        RR+   E S   KA  ++ +I  E +TVV+S +GW R  K H VD+  
Sbjct: 476 AEMYGD-----DRRSPIIERSE-SKALSEKELIPSEAVTVVLSEKGWARCAKGHDVDVVG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +  + + + T G+A++  A  L S R  GE I     +   + +
Sbjct: 530 LSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHLLPSARSQGEPITGRFSIVSGESV 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
               +     + L+ S  G  F+ + +++I+  R GK ++ +    K+     V   + D
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
               +    ++L+F +  +P + +GKG ++ S        ++  +  +        +  +
Sbjct: 650 WCLAISNEGRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIKVL 709

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            +  R    + +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 -AGKRGMTLTADDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/769 (33%), Positives = 390/769 (50%), Gaps = 60/769 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++           ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 4   IEDTKPEEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P + I+ L++ I GPDFPTGGII+  R+ I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIIL-GRQGIRSA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y LGRG   +R +  ++ + +    IVV+EIPYQV K+ ++E+IAEL+  K+I  + D+R
Sbjct: 243 YHLGRGSIVMRGKVSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R   P++++  ++  + ++T F  NM  L     PQVM L  +L 
Sbjct: 303 DESDREGFRVVVELKRDAVPEIVLNQLYKYTPLQTNFGANMVAL-DAGRPQVMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            ++A R +V+ RR+ F +     R  IL GL IA  NIDEII +IR    P         
Sbjct: 362 LFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMS 421

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    I  E+  VK  F+       RRT   E    +     + 
Sbjct: 482 LAIEIADYLDILRSRARVQAIIKTELGAVKSEFATP-----RRTVIVE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          K      S +  ++ D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L        G+A+  ++ L+  + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F + 
Sbjct: 654 TTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVT 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +     R   GVR  +   G    VI   I        +   +Y +  
Sbjct: 714 DVRVFSGRTSMGVRGIALAKG--DRVISLSILHHFDATPAERAAYLKQS 760



 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDH 660
           +  +   +L V++ G        E   + R GK        K+     +     V   D 
Sbjct: 799 MGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQ 858

Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           + +V +  +L+   ++ I   SR  KGVR+ +  DG
Sbjct: 859 IMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADG 894



 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 72/274 (26%), Gaps = 26/274 (9%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             D G R TT   +   + +             +  +  G +R  K           + A
Sbjct: 625 PLDQGERITTIMPLPEDESSWADLD-------VMFATTSGTVRRNKLSDFVDVRRSGIIA 677

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +   EG+S+         D +LL +  G+    P  ++    G        I L     +
Sbjct: 678 MKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRV 737

Query: 603 VTA-----FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKL 652
           ++      F      +   +   G        E I                +S  E   +
Sbjct: 738 ISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYV 797

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC-FKICEGL 709
            +      V  V         S  +     RG KG+R     K G I  ++  F +    
Sbjct: 798 EMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSD 857

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             +  +              +  R   G  V   
Sbjct: 858 QIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNT 891


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/780 (30%), Positives = 395/780 (50%), Gaps = 43/780 (5%)

Query: 6   ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +   +E   +  V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + 
Sbjct: 1   MTETPGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      F K +R+VG+V+GK HPHGD ++YD+LVRL Q +  RYPL++GQGNFG+   D
Sbjct: 61  GYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE +M  +A  +++ +DEDAVDF+D Y+    EP V PS+FPNLL NG++GIA
Sbjct: 121 PAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSAGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+       +++P+ S E+LLE     I GPDFPT   I+  R+ I 
Sbjct: 181 VGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATIL-GRKGIE 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG   +RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   R+  + D
Sbjct: 240 EAYRTGRGSITMRAVVEVEEI-QGRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGIAD 298

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ + +D 
Sbjct: 299 IRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W++H+ +V+ RR+ FR++  +  + I +G L A   +DE+IA+IR     +     
Sbjct: 358 FVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARNG 417

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q  AILNL+LR L  L+  +I    D L A+  +++++L S ++Q   ++
Sbjct: 418 LMELLGIDELQAQAILNLQLRRLAALQRQEIMDRHDALEADITELNAILGSPERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            E+  V + F        RRT        D     + +I +E + V I+  G+       
Sbjct: 478 EELATVVDKFGDE-----RRTHIL---PFDGEVSIEDLIAEEDVVVTITRGGYAKRTRVD 529

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
             R+ +     +     +E D +       T   +L  +  G+ Y   A  L        
Sbjct: 530 AYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNLGRVYRAKAYELPEAGRDAK 589

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+     + I        Y+    L++ + +G       +E  +N   G   + 
Sbjct: 590 GQHVANLLAFQPGEKIAQVLDLRDYEQAEHLVLATKRGLVKKTRLTEYDSNRSGGVIAIN 649

Query: 644 VSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYK- 693
           +  +     +++     V  D  V +V    + + F+     +  M R   GV    ++ 
Sbjct: 650 LREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTASDEALRPMGRATSGVTGMKFRG 709

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           D  +  +   +    L  +   G +   +          RGG+G  V      +G  + +
Sbjct: 710 DDDLLAMDVVREDAFLFTVTEGGIAKRTALTVENYRQQGRGGLGIKVANLPEANGDLVGA 769



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 23/202 (11%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEG-----DSLKIALHAHTTDRILLLSTDG 570
           V+ + RG ++  +    D +      A++ +E      D L  A    +   ++L+S  G
Sbjct: 621 VLATKRGLVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQG 680

Query: 571 KAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           ++    A +  + R  G A   +  +    + D++   V      L  V+  G A     
Sbjct: 681 QSVRFTASD-EALRPMGRATSGVTGMKFRGDDDLLAMDVVREDAFLFTVTEGGIAKRTAL 739

Query: 629 SEIIANTRKGKTFLKVS-------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           + +    ++G+  L +        + + +  +V    D V V+ E  K++  +  ++   
Sbjct: 740 T-VENYRQQGRGGLGIKVANLPEANGDLVGALVTDADDEVLVIMERGKIVRSATSEVNAT 798

Query: 682 SRGK-GVRLQSYKDGGISDVIC 702
            R   GV       G     + 
Sbjct: 799 GRTTQGVIFAKPDTGDRIIAVA 820


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/771 (31%), Positives = 414/771 (53%), Gaps = 27/771 (3%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPVHRR+++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL     ++KSA+IVG V+GK HPH D ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 61  GAYTSGLTHDKPYRKSAQIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSAAA RYTEAR+++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG
Sbjct: 121 SIDGDSAAAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 181 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 240 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L   + P+V+ L  
Sbjct: 300 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQ-PKVLNLKE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            L+ ++ H+ ++L R+++F ++       I++GL+IA  NID++I  I+N    +  K  
Sbjct: 359 ALQIYIDHQFDILLRKTNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNT 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++++ L++ Q  AIL++RLRSL  LE   ++ EL  L    + ++ +L + +++   I+
Sbjct: 419 LMTKYELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
            ++ E+   F        RRT  C     +     + +I  E + +  S++G+       
Sbjct: 479 DQLDEIDHKFGDE-----RRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             +      V +  ++  E D ++  +   T   +L  +  GK Y + A  +   S    
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G     LI +  ++ +++    +   +      + KG    V+ SE       GK  +K+
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKL 651

Query: 645 SSEEKMKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +  + +  V+K  GD    +G  +  L+ F  D +  M R  +GV    +K+     +  
Sbjct: 652 TENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGL 711

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               EG   +    +   +  +     +  RG  G +  K  P++G  +++
Sbjct: 712 SSSHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTPKTGNIINT 762



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              + +G ++ +K+            A+   E DSL   +     + I +  + G     
Sbjct: 622 FFSTKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRF 681

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               + S     + +  +   N N +++          LL V  KG   + +  E     
Sbjct: 682 KEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTN 741

Query: 636 RKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R  K  + +    K   ++        + + ++    K++   + ++ E  R   GV+L 
Sbjct: 742 RGSKGVITIKVTPKTGNIINTQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLI 801

Query: 691 SYKD-GGISDVICFKICEGLT 710
           S  +   +  V  F + +  +
Sbjct: 802 SLNEKETLQSVAIFDVEQDDS 822


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/843 (31%), Positives = 406/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +V E +L  +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+I  HN+
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S
Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +  N +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  KE D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  +G    VI   I                              + +  +      
Sbjct: 722 RGINLAEG--DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDA 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 EAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 830 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 887

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 888 KVVSVERISDADSDEENGNG 907


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 426/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYAQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 TTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RRSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGILFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSLT-VHAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/762 (33%), Positives = 400/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI+ AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P+ SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  ++R
Sbjct: 185 HNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKLR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  +EE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEIVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN D     K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIENFGFTEQQSV 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E+++++++    
Sbjct: 423 AILELRLYQLTGLESEKIQKEYDELINKIAYYKRVLADEGLVKDIIRNELQDLQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D     + +I  EP+ + IS   +++          K     +S
Sbjct: 483 ------RRTTIEFDA-DDVRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + + +G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKQGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           ++T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 RITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVKDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   A L     E      + + +G ++ +            + AL   EGD L  
Sbjct: 594 IRPGEQLAAVLNIKNFENAGFLFLATKQGVVKKVSLDAFSNPRKKGIRALEIDEGDELIA 653

Query: 554 ALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A+   + + +++L +  G A   P   +         ++ +   N    +V   +     
Sbjct: 654 AVRITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVKDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G     +  +     R G       +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + +  ++  +  M R  +GVRL   KDG 
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVLVKDGD 802



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 67/185 (36%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + FS     G R     E+   D+      +  +E   ++ +  G         +R +  
Sbjct: 630 DAFSNPRKKGIR---ALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +       G  ++ ++
Sbjct: 687 TARGVRGVSLKNEKDRVVACQIVKDDQSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSIL 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   +  ++  + +G   + V   + +  
Sbjct: 747 INERNGDVLGAISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 393/741 (53%), Gaps = 37/741 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      
Sbjct: 2   LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGNFG++DGDS AA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+ ++ E ++  + ++ VDF   ++   +EP V P++ PNLL NG SGIAVGMAT++
Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A IDN EI++E+L+ Y+  PDFPTGG  +     + E Y  GRG   
Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGG-YIYGISGVREGYLTGRGRVV 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E  G+    IVVTEIPY V K+ LI+ IA+L+  KRI  + +  DES  D   
Sbjct: 241 MRAKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  +  +++  ++ ++ ++T F +N   L     P+ + L  ++K ++ HR EV
Sbjct: 300 IVIDVKRDANASVVLNKLYKMTALQTSFGVNNVALV-HGRPKTLNLRDMIKYFVEHRHEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I IIR    P   +   + RF+LTE Q 
Sbjct: 359 VIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AI+ +RLR L  L + Q+ +E + ++ +   ++S+L   +     +  E+ EVK  +  
Sbjct: 419 RAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RR+   E+  + +    +     + + + IS+ G+I+              V  
Sbjct: 479 E-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGS 530

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
                ++ D ++    A   + ++  +  GK Y L    +  G     G AIQ L++++ 
Sbjct: 531 KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDS 590

Query: 599 NQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  +             Y ++  +L  + KG        +     + G   + +  ++ +
Sbjct: 591 DDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITIREDDSV 650

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKI 705
             V    G + + +   N + + F    +  M R   GVR  +  + G  +V   IC K 
Sbjct: 651 IEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKD 710

Query: 706 CEGLTWIDSAGRSYNRSENDL 726
            E  + +  + + Y +     
Sbjct: 711 LETESVMVVSEQGYGKRSEIE 731


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/773 (33%), Positives = 422/773 (54%), Gaps = 36/773 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
            NI +   ++  ++   ++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E
Sbjct: 5   KNIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKE 64

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL    A+KKSARIVG+V+GK HPHGD +VY ++VR+ Q F  RYP+I GQGNFG+IDG
Sbjct: 65  MGLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDG 124

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE RM  + + +L  +D++ VDF   Y+    EPV+ P+K P+LL NG++GI
Sbjct: 125 DFAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP+HN+ E+ +A + LID+ EIS+ ++++YI GPDFPTG II+  +  I +  
Sbjct: 185 AVGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIIL-GKSGIKDYM 243

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  ++RA+  +EEV  G   I+V EIPYQV K+ LI  IA+L+  K+I  + D+RD
Sbjct: 244 EKGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRD 303

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   ++    R  +  +++  ++  + M+  F + M  L     P+VM +  IL  
Sbjct: 304 ESDRDGIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNN-RPKVMNVKEILIH 362

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
            + HR+ ++ RR+ F +Q  + R  IL+GL IA  NID +I II+   +ED  +  ++S+
Sbjct: 363 HIEHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK 422

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LT+ Q +AIL +++R L  L+  +I  E   L+   EK+ S+L   K+  + I  E  
Sbjct: 423 LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEKLRSVLADPKKVLDIIKNEAL 482

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           ++K  +      G +R T  + + AD     + +I++E + V +S+ G+I+         
Sbjct: 483 DIKRKY------GDKRRTQIQAAEADFNI--EDLIQEEEVAVTMSHAGYIKRIPLDTYKA 534

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
                  ++A++ +E D ++      +   +L  +T G+ Y +    +  G     G+AI
Sbjct: 535 QHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEIPEGARTSKGKAI 594

Query: 591 QLLIDLNHNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             L+ L   ++ +TA +        Y     LL+ +  G    +   + I   ++G   +
Sbjct: 595 VNLLQLQGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKIALDKFINPRKRGIIAI 654

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           K+   + +  V  +  +  V +  +    + F    I  + R G+GV+    K G   +V
Sbjct: 655 KLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVIGRAGRGVKGIELKKG--DEV 712

Query: 701 ICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I  ++      ++  +   Y +        L KR G G +  +   R+G  + 
Sbjct: 713 IGMEVFSPDDVFLSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERNGNMIG 765



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
           T  +++ A           K+   ++ +  G I+       +      + A+  ++GD L
Sbjct: 603 TEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKIALDKFINPRKRGIIAIKLEDGDIL 662

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 +    +++ +  G +      ++      G  ++  I+L    +++   V+   
Sbjct: 663 TEVKAINKNPEVVIATKKGSSIRFKESDIRVIGRAGRGVKG-IELKKGDEVIGMEVFSPD 721

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
              L +S  G     +  +     R G   + +   E+   ++ +     G+ V ++ +N
Sbjct: 722 DVFLSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERNGNMIGIKKANDGEEVMIITQN 781

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              +   ++ I  + R  +GVRL     G     I   + +
Sbjct: 782 GITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKD 822



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           +K+I        R+R              +   I K P  V+ + +G         IR +
Sbjct: 635 IKKIALDKFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI 694

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 +  +  K+GD +         D  L +S +G       G     +  G  +  +
Sbjct: 695 GRAGRGVKGIELKKGDEVIGMEVFSPDDVFLSISENGYGKRTKVGKYRLQKRAGHGVINM 754

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
                N +++     +   ++++++  G    +  + I    R   G   +++ + +K+ 
Sbjct: 755 QMSERNGNMIGIKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVA 814

Query: 652 LVVKVTGDH 660
            +  V  D 
Sbjct: 815 AIACVVKDE 823


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/843 (31%), Positives = 409/843 (48%), Gaps = 120/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            +VGEV+GK HPHGD S+YD+LVR+AQ F  R PL+ GQGNFG+IDGD  AA RYTE R+
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++ E IL  +D+D VDF+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI+NP I +E+++E I GPDFPTGGII+  R  I  +Y  GRG   +R R 
Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIIL-GRAGINSAYTTGRGSVIMRGRA 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+   
Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVEL 310

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+
Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALN-GGKPEQLNLLDMLRAFVAFREEVVTRRT 369

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------------- 413
            F +     R  +L GL IA  NIDE+IA+IR    P                       
Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRL 429

Query: 414 ------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L+S
Sbjct: 430 IDDPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F+       RRT   E+         + +I +E + V +S+ 
Sbjct: 490 RLRVMTIVKDEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  K+ D +     A+T   +L  S+ G  Y      
Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 602 LPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDF 661

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 662 VQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGV 721

Query: 688 RLQSYKDGGISDVICFKI-----------------------------CEGLTWI------ 712
           R  +  DG    VI   I                              + +  +      
Sbjct: 722 RGINLADG--DKVISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGT 779

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 +   Y +  +     +  RGG G        ++   GK
Sbjct: 780 DAELTEELYQELKAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRAT-DTSKTDEIGK 838

Query: 750 FLS 752
            ++
Sbjct: 839 LVA 841



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  +GD +            +      ++  L   ++   R  G      I
Sbjct: 716 RNSIGVRGINLADGDKVISMAIL----HHVDADASTRSAYLK-RSIAERRAQGADDADDI 770

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+ T                  +L VS  G        E   + R GK      
Sbjct: 771 -VVVGEDVGTDAELTEELYQELKAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATD 829

Query: 642 -LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             K     K+  +  V   D + +V +  +L+   +D I    R  KGV + +  DG
Sbjct: 830 TSKTDEIGKLVALFPVEASDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG 886


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 AETY------GDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +     L+ +  G  FI   +++++  + GK  L + +  K      +  +   
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREM 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 427/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RRSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S +  +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDIQVLTTNDSLT-VHAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 451/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/770 (30%), Positives = 395/770 (51%), Gaps = 44/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+++AM + G    +AF K
Sbjct: 30  DRVEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSK 89

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VG+V+G  HPHGD ++YD+LVRL QP+  RYPL++GQGNFG+   DSAAA RYTE 
Sbjct: 90  CARVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTEC 149

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +D+D VDF D Y+    EP++ P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 150 KMAPLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPH 209

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ + E+LL      I GPDFPTG  I+  R  I ++YR GRG  
Sbjct: 210 NLREVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHR-GIEDAYRTGRGSI 268

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VVTE+PYQV   RL  KI E++   RI  + D+RDE S    
Sbjct: 269 TMRAVVEVEEI-QGRQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAG 327

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W  H+ 
Sbjct: 328 QRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSLDAFVRHWTMHQI 386

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +   +RR+ IL+GLL A   +DE+IA+IR   + D+ +  ++    + E 
Sbjct: 387 DVIVRRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLMELLEIDEV 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE+ +I  E   + A       +L S ++Q + +  E+  + E +
Sbjct: 447 QATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDILASEERQRSIVRSELGAIVERY 506

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRTT       D     + +I +E + V I+  G+         R+ +    
Sbjct: 507 GDE-----RRTTIL---PFDGEMSVEDLIPEEDVVVTITRGGYAKRTRTDNYRAQRRGGK 558

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +     +E D +       T   +L  +  G+ Y      L  G     G+ +  L+  
Sbjct: 559 GVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKGYELPEGGRDAKGQHVANLLAF 618

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----E 648
              + I        YD    L++ + +G       +E  ++   G   + + ++     +
Sbjct: 619 QPGEKIAQVLALRDYDQADYLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVD 678

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++     V   D + +V    + + F+     +  M+R   GV    ++     +++   
Sbjct: 679 EVVSARIVGAEDDLLLVSRKGQSIRFTATDEALRPMARATSGVTGMKFRAD--DELLAMD 736

Query: 705 ICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + E            + +        +  RGG+G  V       G  + +
Sbjct: 737 VVETDADLFVVTEGGFAKRTALGEYRVQGRGGLGIKVANLVEARGDLVGA 786



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 23/221 (10%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAH---TTDRI 563
            ++    V+ + RG ++  +    D S         L   +G ++   + A      D +
Sbjct: 633 YDQADYLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVDEVVSARIVGAEDDL 692

Query: 564 LLLSTDG---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           LL+S  G   +            R    +    +    + +++   V ++   L VV+  
Sbjct: 693 LLVSRKGQSIRFTATDEALRPMARA--TSGVTGMKFRADDELLAMDVVETDADLFVVTEG 750

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A      E     R G      +      + +  +V  + D V V+ E  K++  ++D
Sbjct: 751 GFAKRTALGEYRVQGRGGLGIKVANLVEARGDLVGALVVDSDDEVLVIMERGKIVRSAVD 810

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           ++    R  +GV       G    +I   + E     D+  
Sbjct: 811 EVTRTGRNTQGVTFAKPDAG--DRIIAIALGEERAVADAGE 849


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/766 (30%), Positives = 403/766 (52%), Gaps = 40/766 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++++M+E G  +    +K
Sbjct: 6   DRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR VG+++GK HPHGD SVY++LVRLAQ +  RYPL+ GQGNFG+IDGDS AA RYTE+
Sbjct: 66  CARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ Q A+ +L+ +D + VDF+D ++ +  EP V P + PNLL NG +GIAVGMAT++  H
Sbjct: 126 RLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N+ E   A +A ID   EI++++L++Y+  PDFPTGG+ +   E + E++R GRG   +R
Sbjct: 186 NLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGV-IYGYEGVKEAFRTGRGRIVIR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +EE       I++ EIPYQV+KS ++ KIA+L+  K+I  + DI DES+     ++
Sbjct: 245 GKADIEEYHS-HERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  SD+E+ F +N   L  G  P+ + L  ++  ++ HR +V+ 
Sbjct: 304 IDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVNG-RPRQLNLKDLIGHFVDHRHDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+ + ++    R+ IL+GL+IA  +IDE+I IIR+ ++ +  M   +  F+L+E Q  A
Sbjct: 363 RRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR L KL+  +++ E + L    + ++  L+    +   I  E RE+ E +    
Sbjct: 423 IVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIEKYGDE- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E+  A +    +     E + + IS+ G+I+              V +  
Sbjct: 482 ----RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D ++    A     ++L +  G+ Y L    +  G     G  IQ L+DL+   
Sbjct: 535 ADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEEN 594

Query: 601 DIVTAF---------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            I              + +T  L+  + +G       +      + G   + +  ++++ 
Sbjct: 595 RITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRDDDQVV 654

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI---- 705
            V    G+  + +   N + + F+  ++  M R   GVR     +     V+   +    
Sbjct: 655 SVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDNDPNDKVVGMVVHRLK 714

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               T +  + + Y +        + KRG  G        ++G+ +
Sbjct: 715 NSDETILVISEKGYGKRSRIDDYRITKRGAKGVKTINVTDKTGQLI 760



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 15/186 (8%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + +G I+              + A++ ++ D +     ++    I L + +G+    
Sbjct: 618 VFATEQGLIKKTLLAHYANPRKTGVRAINLRDDDQVVSVALSNGNCEIFLANRNGRCVRF 677

Query: 576 PAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI 631
               +   GR       + +D + N  +V   V+   +S   +LV+S KG        + 
Sbjct: 678 NEQEVRPMGRTATGVRGIRLDNDPNDKVVGMVVHRLKNSDETILVISEKGYGKRSRIDDY 737

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R  K    ++  +K   +  +  V  D  + ++ ++   +  S++Q+  M R   G
Sbjct: 738 RITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQG 797

Query: 687 VRLQSY 692
           V++   
Sbjct: 798 VKMIDL 803


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 406/765 (53%), Gaps = 27/765 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +  +S T +   V  + L   ++  YL YA+S I  RA+PD RDG KPV RR+++AM E+
Sbjct: 2   DQDSSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLEL 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL    AFKKSAR+VGE +GK HPHGD ++Y+++ RL+Q F  RYPL+ GQGNFG+IDGD
Sbjct: 62  GLRHNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+  + E +L  +DE+ V++   ++E   EP+V PS+ PNLL NG++GIA
Sbjct: 122 PPAAMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN++E+ +A  AL+++P+I + +L+  + GPDFPTGG+I+  R+ IV++Y+
Sbjct: 182 VGMATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVIL-GRDGIVDAYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VR    +E+  RG   IV+TEIPY V K+ LIE IA+   +  +  + D+RDE
Sbjct: 241 TGRGKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+   +R  DP+L++  ++  + +++ F +    L  G  P+V+ L  IL+ +
Sbjct: 301 SNREGIRVVLELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDG-RPRVLTLHQILQVF 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           L HRR V+ RR+  R++  + R  I++GL+ A   ID++IA+IR+   P   K  +V   
Sbjct: 360 LDHRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVETL 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q  AIL++RL+ L  LE  +++ EL  LL + E+  S+L +       +  E++E
Sbjct: 420 GFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPSILDGVVRGELQE 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           ++  +        RRT   +          + +I +  I VV+S  G+         R  
Sbjct: 480 IRAAYED-----DRRTRIEDAVE---DVSAEDLIPESEIVVVLSRDGFLRRMPLQDYRCQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQL 592
                 +     +  D + +     T   + L ++ G+ + +    L   + G G+ +  
Sbjct: 532 SRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLPEPKTGKGKHVST 591

Query: 593 LIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            + L   + +VT      D    +  V+ +G A  +  +E+    R G+  L ++ E+ +
Sbjct: 592 FVSLEEGERVVTLRDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRRILGLAPEDTI 651

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V    G D + +     + L     +     R   GVR     +G +  V C  I  G
Sbjct: 652 ARVRFTGGEDELLLTTAQGQTLRVPEGEFRPQGRTAHGVRGVRLDEGDLV-VGCDVIEPG 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  + R   +           RGG G    K   R+G  + +
Sbjct: 711 RQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDRTGDLVGA 755



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSVD------LS 541
            T  G+  +TF  +   ++    +            ++ RG  + L    +D        
Sbjct: 582 KTGKGKHVSTFVSLEEGERVVTLRDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRR 641

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L     D++         D +LL +  G+   +P G           ++  + L+    
Sbjct: 642 ILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRPQGRTAHGVRG-VRLDEGDL 700

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVT 657
           +V   V +   ++L +S +G        E  A+ R G     +K+     + +       
Sbjct: 701 VVGCDVIEPGRQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDRTGDLVGAWGVRE 760

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICE 707
            D + V+    +++     +I  + R   G ++    +G  ++DV   +  +
Sbjct: 761 DDELVVISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCAD 812


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 394/764 (51%), Gaps = 38/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE S    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR     D  +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT    ++  D     + +I +E + V I+  G+++               
Sbjct: 519 GD-----DRRTEI--MAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGK 571

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +     +  D ++  L   T   +L  +  G+ Y +    L        G+ +  L+  
Sbjct: 572 GVRGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAF 631

Query: 597 NHNQDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y     L++ +  G        +   N   G   +K+   +++   
Sbjct: 632 QPDERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSA 691

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             V+  D + ++    + L F+     +  M R   GV    ++D     ++   + E  
Sbjct: 692 RVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDD--DSLLTMDVVEED 749

Query: 710 TWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++       + +  +     L  RGG+G  V K     G+   
Sbjct: 750 GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++       D +      A+  +EGD L  A      D ++L+S  G++
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQS 709

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A   +  +    +  ++T  V +    +  V+  G A      E
Sbjct: 710 LRFTATD-EALRPMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDE 768

Query: 631 IIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G   K    V    ++   + V  D  V VV  + K++  ++  +P   R   
Sbjct: 769 YRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTM 828

Query: 686 GVRLQSYKDGGISDVICFKIC 706
           GV     K      ++   + 
Sbjct: 829 GVIF--AKPDKRDRIVAVTLN 847



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 64/183 (34%), Gaps = 14/183 (7%)

Query: 491 DLGRRRT---TFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRSLKSHS 537
           D    RT      ++   D+    + +   + + ++IS++G           +R +   +
Sbjct: 668 DYDTNRTAGLIAIKLREGDELVSARVVSPDDDL-ILISHKGQSLRFTATDEALRPMGRAT 726

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             ++ + F++ DSL           +  ++  G A              G  I++   ++
Sbjct: 727 SGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVD 786

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
              ++    V     ++LVV + G       + + A  R     +    +++ ++V    
Sbjct: 787 DRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTL 846

Query: 658 GDH 660
            + 
Sbjct: 847 NNE 849


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 394/764 (51%), Gaps = 38/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE S    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR     D  +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT    ++  D     + +I +E + V I+  G+++               
Sbjct: 519 GD-----DRRTEI--MAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGK 571

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +     +  D ++  L   T   +L  +  G+ Y +    L        G+ +  L+  
Sbjct: 572 GVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAF 631

Query: 597 NHNQDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y     L++ +  G        +   N   G   +K+   +++   
Sbjct: 632 QPDERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSA 691

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             V+  D + ++    + L F+     +  M R   GV    ++D     ++   + E  
Sbjct: 692 RVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDD--DSLLTMDVVEED 749

Query: 710 TWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++       + +  +     L  RGG+G  V K     G+   
Sbjct: 750 GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++       D +      A+  +EGD L  A      D ++L+S  G++
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQS 709

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A   +  +    +  ++T  V +    +  V+  G A      E
Sbjct: 710 LRFTATD-EALRPMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDE 768

Query: 631 IIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G   K    V    ++   + V  D  V VV  + K++  ++  +P   R   
Sbjct: 769 YRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTM 828

Query: 686 GVRLQSYKDGGISDVICFKIC 706
           GV     K      ++   + 
Sbjct: 829 GVIF--AKPDKRDRIVAVTLN 847



 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 138/413 (33%), Gaps = 30/413 (7%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP-KNRSLDPD 323
              + + ++  Q      + ++A L   K     +D+  + AE  RI+  P + R +  +
Sbjct: 450 KELLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISE 509

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L E +    D + R  +         +  ++P + ++       R    +R+       
Sbjct: 510 ELAEIVAKHGD-DRRTEIMAGFDGDMSIEDLIPEEEMVVSIT---RGGYVKRTRIDQYRS 565

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R    KG+  A L  D+++           V    + L       +  ++   L +  
Sbjct: 566 QARG--GKGVRGATLRGDDVVEHFL------TVSTHHWLLFFTNFGRVYRIKTYELLEAG 617

Query: 444 EYQIKSELDNL-----LAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRT 497
                  + NL          +I  L++ G+  +  +A     VK+              
Sbjct: 618 RDAKGQHVANLLAFQPDERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGL 677

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRSLKSHSVDLSALHFKE 547
              ++   D+    + +   + + ++IS++G           +R +   +  ++ + F++
Sbjct: 678 IAIKLREGDELVSARVVSPDDDL-ILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRD 736

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            DSL           +  ++  G A              G  I++   ++   ++    V
Sbjct: 737 DDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLV 796

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                ++LVV + G       + + A  R     +    +++ ++V     + 
Sbjct: 797 VREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNE 849


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/756 (34%), Positives = 415/756 (54%), Gaps = 31/756 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V  V +   L + YL Y++S I  RA+PD+RDG KPVHRRI++AM +MG+   + +KKSA
Sbjct: 3   VIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY++LVR+AQ F  R PLI GQGNFG+IDGD+AAA RYTEAR+
Sbjct: 63  RIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++AE +L+ +D+D VDF   Y+  + EPVV P++FPNLL NG+SGIAVGMAT+IP HN+
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + +IDN E ++E +L++I GPDFPTGGII      +  +Y+ GRG  ++RA+ 
Sbjct: 183 GELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILE-AYKSGRGSIKIRAKH 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E  G     IV+ E+PYQV K++LIEKI+EL+  K I  + +IRDES  +   V+   
Sbjct: 242 HIEHRGN-REIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIEL 300

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +    ++++ +++  + M+  F +NM  +     P++  L  IL  ++  R+ V+ RR+
Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLAILDKE-PKLFNLMEILNTFIKFRKTVVIRRT 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433
            + ++   +R  IL+GLLIA  NIDE++ II+N     + K  ++ RF L+E Q  AIL+
Sbjct: 360 IYELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIERFDLSEVQAQAILD 419

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L  L  LE  +++ E D L  +   + S+L       N I  E  E+++ ++      
Sbjct: 420 MKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEESVLNNVIKEEFLEIRKKYANERK-- 477

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
                  E+         + +I  E + V I++RG+++                  AL  
Sbjct: 478 ------TEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKTYERQNRGGKGKKALTT 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++    A   D +++++  G+ + L    +   S    G+AI  LI+L+ ++ I 
Sbjct: 532 YENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKGKAIVNLINLDKDEKIQ 591

Query: 604 TAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           T      +D    L   +  G       SE       G   + +  ++++     V  D 
Sbjct: 592 TIIKTSDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTAKIVKEDD 651

Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAG 716
             + +V +    + F +D + EM R  +GV+  ++K  G   V    +  E    +  + 
Sbjct: 652 KYLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQEILSVSE 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + + +        L  RGG G +  K   ++G  + 
Sbjct: 712 KGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLVG 747



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +     +  ++ +  ++       +  G ++              + A+   + D L  A
Sbjct: 585 DKDEKIQTIIKTSDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTA 644

Query: 555 LHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTC 612
                 D+ L + +  G A   P   +     +   ++ +       ++V A    D   
Sbjct: 645 KIVKEDDKYLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQ 704

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENR 668
           ++L VS KG     E        R GK  + +       + + +V       + ++    
Sbjct: 705 EILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLVGVVATEENHDLMLLTSKG 764

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           K++  SID I +  +  +GVRL    D      +     +    +
Sbjct: 765 KMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKTPSQKEELL 809



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 26/218 (11%)

Query: 465 LNSGKQQWNQIA-CEIREVKEIFSKSTDLGRRRTTFCE-------------VSRADKATL 510
           L+  ++    I   +  E K +   + +   +RT   E             + + D+   
Sbjct: 584 LDKDEKIQTIIKTSDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVT 643

Query: 511 QQAMIEKEPITVVISNRG--------WIRSLKSHSVDLSALHFK-EGDSLKIALHAHT-T 560
            + + E +    +++ +G         +R +  ++  +  + FK EGD +  AL      
Sbjct: 644 AKIVKEDDKYLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEK 703

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
             IL +S  G      A         G+ +  +   N   D+V     +    L++++SK
Sbjct: 704 QEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLVGVVATEENHDLMLLTSK 763

Query: 621 GNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           G    V    I    +   G   +++  ++K+  V K 
Sbjct: 764 GKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKT 801


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/764 (31%), Positives = 394/764 (51%), Gaps = 38/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L   ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     AF K
Sbjct: 42  DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+G  HPHGD ++YD+LVRL Q +VQRYPL  GQGNFG+   D AAA RYTE 
Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DED VD +D Y+ +  EPVV P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+       +++PE + E+LLE     + GPDFPTG  I+  R+ I E YR GRG  
Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VVTE+PY      L  KIAE++   +I  + D+RDE S    
Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETSGRTG 339

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  L  G VP+ + LDG +  W+ H+ 
Sbjct: 340 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQI 398

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR++FR +  + R  IL+GLL A   +DE+IA IR     D  +  +     + + 
Sbjct: 399 DVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDDV 458

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++LR L  LE  +I+ E D+L+A+  + + +L S ++Q   I+ E+ E+    
Sbjct: 459 QAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIVAKH 518

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT    ++  D     + +I +E + V I+  G+++               
Sbjct: 519 GD-----DRRTEI--MAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGK 571

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +     +  D ++  L   T   +L  +  G+ Y +    L        G+ +  L+  
Sbjct: 572 GVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAF 631

Query: 597 NHNQDIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y     L++ +  G        +   N   G   +K+   +++   
Sbjct: 632 QPDERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSA 691

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             V+  D + ++    + L F+     +  M R   GV    ++D     ++   + E  
Sbjct: 692 RVVSPDDDLILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRDD--DSLLTMDVVEED 749

Query: 710 TWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++       + +  +     L  RGG+G  V K     G+   
Sbjct: 750 GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAG 793



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 16/201 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ +  G ++       D +      A+  +EGD L  A      D ++L+S  G++
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQS 709

Query: 573 YTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
               A +  + R  G A   +  +    +  ++T  V +    +  V+  G A      E
Sbjct: 710 LRFTATD-EALRPMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDE 768

Query: 631 IIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G   K    V    ++   + V  D  V VV  + K++  ++  +P   R   
Sbjct: 769 YRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTM 828

Query: 686 GVRLQSYKDGGISDVICFKIC 706
           GV     K      ++   + 
Sbjct: 829 GVIF--AKPDKRDRIVAVTLN 847



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 138/413 (33%), Gaps = 30/413 (7%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP-KNRSLDPD 323
              + + ++  Q      + ++A L   K     +D+  + AE  RI+  P + R +  +
Sbjct: 450 KELLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISE 509

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L E +    D + R  +         +  ++P + ++       R    +R+       
Sbjct: 510 ELAEIVAKHGD-DRRTEIMAGFDGDMSIEDLIPEEEMVVSIT---RGGYVKRTRIDQYRS 565

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             R    KG+  A L  D+++           V    + L       +  ++   L +  
Sbjct: 566 QARG--GKGVRGATLRGDDVVEHFL------TVSTHHWLLFFTNFGRVYRIKTYELLEAG 617

Query: 444 EYQIKSELDNL-----LAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRT 497
                  + NL          +I  L++ G+  +  +A     VK+              
Sbjct: 618 RDAKGQHVANLLAFQPDERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTAGL 677

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IRSLKSHSVDLSALHFKE 547
              ++   D+    + +   + + ++IS++G           +R +   +  ++ + F++
Sbjct: 678 IAIKLREGDELVSARVVSPDDDL-ILISHKGQSLRFTATDEALRPMGRATSGVTGMKFRD 736

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            DSL           +  ++  G A              G  I++   ++   ++    V
Sbjct: 737 DDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLV 796

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                ++LVV + G       + + A  R     +    +++ ++V     + 
Sbjct: 797 VREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNE 849


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/755 (37%), Positives = 446/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G  R +   V    KA  ++ ++  E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        K+  +S +I       LT + + 
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKIINIPAAKAKAKEEILSHLIALPKGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPADLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 413/765 (53%), Gaps = 38/765 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  ++ V L   ++  ++ YA+S I  RA+PD+RDG KPV RRII+ MS++G   G  
Sbjct: 1   MEERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY L+ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ + ED +DF   Y+ E+ EP V P++ PNLL NG++GIAVGMAT+I
Sbjct: 121 TEARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ EA LA+  +P+I+I +L+E YI GPDFPTGG I+  + +I ++Y  G G  
Sbjct: 181 PPHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYIL-GKTAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +EE G     IVVTEIPY V K+R+IEK+++L+  K+I  + +IRDES  D  
Sbjct: 240 VMRAKTEIEEKGSKK-VIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGI 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R + P++++  ++ L+ ++T F  N   L     P+ + L  ++  +L H+ E
Sbjct: 299 RVVIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNE-PKTLNLKEMITLYLDHQEE 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ FR+   + R  IL+GL  A   ID II +IR+       +  ++  F++++ Q
Sbjct: 358 VIKRRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEEFNMSDKQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I+ +L+ LL     +  +L + ++  + I  E+ E+K+ + 
Sbjct: 418 AKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+ +       + +I  E + + ++N G+++                
Sbjct: 478 DK-----RRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYVKRMPVDTYKTQNRGGRG 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +     D +   ++  T D +L  +  GK Y L   N+        G  +  L++L+
Sbjct: 530 IKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLNLD 589

Query: 598 HNQDIVTAFV-------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + + +           ++   L  V++ G    V  +E     + GK  + +  ++++
Sbjct: 590 KEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDDDQL 649

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICE 707
             V    G D + +   N KL+ F    +  M R   GV+  +      S+VI      E
Sbjct: 650 VSVKLTGGNDQILIAASNGKLVRFEETNVRPMGRSASGVKGINV---DGSEVIGMTTDKE 706

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           G   +    R Y +        L  RGG G        R+G+ ++
Sbjct: 707 GKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVA 751



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 78/203 (38%), Gaps = 15/203 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +V        +Q     +     ++  G ++ +  +           A+  ++ D L   
Sbjct: 593 QVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDDDQLVSV 652

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK 613
                 D+IL+ +++GK       N+   R  G +   +  +N    +++          
Sbjct: 653 KLTGGNDQILIAASNGKLVRFEETNV---RPMGRSASGVKGINVDGSEVIGMTTDKEGKY 709

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRK 669
           ++VV+ +G   +    E   + R GK    +++ E+   +  +  V GD  + ++ ++  
Sbjct: 710 IMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVALRAVNGDEDLLIITDDGI 769

Query: 670 LLIFSIDQIPEMSRGK-GVRLQS 691
           ++   ++Q+    R   GVRL  
Sbjct: 770 MIRLPMEQVKTAGRATQGVRLIK 792


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 426/746 (57%), Gaps = 25/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E  +   L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A +
Sbjct: 7   MNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKY 66

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S AA RY
Sbjct: 67  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRY 126

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++  A+++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVGMA+ I
Sbjct: 127 TEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDI 186

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A + L+DNP+  I+ + EYI GPDFPT   I+   E+I   Y  G G  +
Sbjct: 187 LPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIK 246

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA +  E        IV+T +PYQV  +R++E+IA  +  K++P++ED+RDES  +   
Sbjct: 247 MRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPT 301

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  IL EWL  R 
Sbjct: 302 RLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILTEWLEFRL 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             + RR  FR++ +  R+ IL+GLLIAYLNIDE+IAIIR  ++PK  ++SRF+LTE Q +
Sbjct: 362 ATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFNLTERQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL ++LR L KLEE +++ ELD L  E++ +   L S       +  EI + ++ F   
Sbjct: 422 AILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDP 481

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                 R +        +A  ++ ++  EPITVV+S  GW+R+ K H VD   L +K GD
Sbjct: 482 ------RRSPIITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGKELSYKAGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             K    A T  ++L    +GK Y+LP   L S RG GE +   ++             +
Sbjct: 536 EFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVLFEAIVGGE 595

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGE 666
              K+L+ +  G  FI +  ++    R GK  +K+S    +     +       VA    
Sbjct: 596 PEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATN 655

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSY 719
             +LLIFS++++PE+SRGKG +L S        ++  I D+      + LT + +  R +
Sbjct: 656 VGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDMQVLTTNDSLT-VYAGKRHF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFP 745
                DL  + G+RG  G+ +P+G  
Sbjct: 715 TLKGEDLTHYKGERGRRGNRLPRGLQ 740


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 442/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L+   E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++ P+++++ +++YI GPD+PT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGLVEILNEWIT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR E++PKPV++SRF+++E 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPVLMSRFNISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EPITVV+S+ GW+RS K H ++ S L +K
Sbjct: 477 GD-----DRRSPLQEREE-AKALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    +    + L + G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDSFKEAARGKSNQAAVFLDSTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY----KDGGISDVICFKI--CEGLTWIDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +        G   ++   +   +    +    R
Sbjct: 651 ITKAGRMLLFPVSNLPQLSKGKGNKIINITGAQAASGEDLLVWLMVVPPQSAITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KLKFKSEDLQKYRAERGRKGTTLPRGL 737


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/762 (33%), Positives = 398/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQP+  RYPL+ GQGNFG++DGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP  SIE+++E + GPDFPTGGII    E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIIC-GHEGICSTYHTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    IV+TEIPY V KSRLIE+IA+L+  K +  + D+RDES ++   V
Sbjct: 244 ARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++T F  NM  L    +P+ M +  ++  W+ HR EVL
Sbjct: 304 VLELKKGESSEVMINRLYKFTDVQTTFGANMLAL-DKNLPRTMNIHRMISAWIRHRAEVL 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ F +   + R  IL+G L A   +D ++  I++ D     K  ++  +  T+ Q  
Sbjct: 363 RRRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIELYGFTDAQAV 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  + + E D LL +      +L   +   + I  E++++ +     
Sbjct: 423 AILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRVLADEELVKDIIRTELQDLVKYHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D     + +I  E + + IS   +++          +     +S
Sbjct: 483 ------RKTTIEFDA-DDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQRRGGHGVS 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y +    L  G  R  G+++   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKSLINFLEGIR 595

Query: 598 HNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             +    I+    +++   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEQVAAILNVKSFENADFLFLATKQGVVKKVPLDAFSNPRKKGIRALEIDDNDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  +H  V +  +    + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDCVVSCQIVTDNQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGG+G        R+G  L +
Sbjct: 716 LVVCENGFGKRSLVSDFRETNRGGIGVRSILINERNGDVLGA 757



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   A L     E      + + +G ++ +   +        + AL   + D L  
Sbjct: 594 IRPGEQVAAILNVKSFENADFLFLATKQGVVKKVPLDAFSNPRKKGIRALEIDDNDELIA 653

Query: 554 ALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H     DR++L +  G A   P   +         ++ +   N    +V+  +     
Sbjct: 654 ACHIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDCVVSCQIVTDNQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G       S+     R G       +   + + +  V     D + ++    
Sbjct: 714 SVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERNGDVLGAVPVADNDSILLMSGQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           + +  S+  +  M R  +GVRL   KDG +
Sbjct: 774 QAIRISMQDVRIMGRSTQGVRLVHLKDGDV 803


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 418/756 (55%), Gaps = 29/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP HN
Sbjct: 123 MSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ + +L LIDNPEIS  +L+EYI GPDFPTGGI ++ ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGI-IDGKKGIRDAYLTGRGKIRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  +   V+  
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +++++ F + M  L    VP+V+ L  +L E+++HR +V+ RR
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNN-VPKVLTLKQMLCEYISHRFQVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +    +R  IL+G  IA  NI+ II +IR+       K  ++ +++ TE Q  +IL
Sbjct: 361 TLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +      
Sbjct: 421 DMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G +R T  E  R +   L + +I+ E + +  +N+G+I+                ++ L+
Sbjct: 475 GDKRRTHIEEERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D +   L A   D +++ +  GK Y +    L   S +  G  I  L+ +   + I
Sbjct: 533 TIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
                  V+D   +L+ V+ +G        E       G   +K   E+ +  V  V+  
Sbjct: 593 RAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAA 652

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F  D +    R   GV+    ++G           + +  +    
Sbjct: 653 ENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITE 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G +  +   ++G  +S
Sbjct: 713 NGYGKRTRLDEYPSHNRGGKGVINLRCNDKTGNIVS 748



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/429 (12%), Positives = 139/429 (32%), Gaps = 28/429 (6%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D +   E +   +  ++++ +  L+M 
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMR 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         + K  +  +  +      + +   +              +I+
Sbjct: 424 LQRLTGLEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTYGDKRRTHIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-------LRKLEEYQIKSELDNL 454
           E    I  ED  K   +      +  +  I   + +S       +  L           L
Sbjct: 484 EERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDTIL 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N    ++ E+             R          +A ++  +
Sbjct: 544 TASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLR---IGEEEKIRAIIKTRV 600

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL-S 567
            +KE   V ++ +G ++              L A+ FKE D L         +  + + +
Sbjct: 601 FDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAAENEVFIAT 660

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G A   P  N+     +   ++ +     ++ +    + +    +L ++  G      
Sbjct: 661 RKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITENGYGKRTR 720

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E  ++ R GK  + +   +K   +V V      + +  +  N  ++   ++ I   SR
Sbjct: 721 LDEYPSHNRGGKGVINLRCNDKTGNIVSVLTALDEEELVCITSNGIIIRTPMNSISRFSR 780

Query: 684 GK-GVRLQS 691
              GV +  
Sbjct: 781 AAQGVIIMK 789


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/757 (35%), Positives = 439/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 GETY------GDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS+  +P++S+GKG ++      +     +++        E    + 
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSETSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/858 (31%), Positives = 420/858 (48%), Gaps = 122/858 (14%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ ++AE +L  +D++ +DF+D Y+  + EPVV P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EEV      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  N+  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  IL GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  ++E F+       RRT F      +     +
Sbjct: 479 KIGVDITDYLHILASRLRIMGIVKDELSTLREEFAAP-----RRTIFG---FGNIEMDNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+  E    L V+     D V +   N + + F 
Sbjct: 651 ATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------------- 705
           +  +     R   GVR  +  DG    VI   I                           
Sbjct: 711 VIDVRVFAGRNSVGVRGINMVDG--DKVISMTILEHVEATSVERSAYIKRAINERRAAGA 768

Query: 706 -CEGLTWIDSAGR---------------------------SYNRSENDLLGWLGKRGGVG 737
             E +  +D  G                             Y +  +     +  RGG G
Sbjct: 769 DAEDVVIVDENGEGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKG 828

Query: 738 SLV--PKGFPRSGKFLSS 753
                P      GK +++
Sbjct: 829 IRATDPTKTAEIGKLVAA 846



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 29/230 (12%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
              D     +   E++ + +  +N   IR            +SV +  ++  +GD +   
Sbjct: 680 EEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGRNSVGVRGINMVDGDKVIS- 738

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---- 610
               T    +  ++  ++  +    +   R  G   + ++ ++ N +     + D     
Sbjct: 739 ---MTILEHVEATSVERSAYIKRA-INERRAAGADAEDVVIVDENGEGTETELTDERYAE 794

Query: 611 ----TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVTG-DH 660
                  LL VS  G        E   + R GK        K +   K+     V   D 
Sbjct: 795 LAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQ 854

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEG 708
           + +V +  +L+   I+ I    R  KGV +  + K   +  V      E 
Sbjct: 855 IMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISDPED 904


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/756 (33%), Positives = 418/756 (55%), Gaps = 29/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP HN
Sbjct: 123 MSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ + +L LIDNPEIS  +L+EYI GPDFPTGGI ++ ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGI-IDGKKGIRDAYLTGRGKIRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + +++ EIPYQ+ KS LIE+IA L+  K+I  + D+RDES  +   V+  
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +++++ F + M  L    VP+V+ L  +L E+++HR +V+ RR
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNN-VPKVLTLKQMLCEYISHRFQVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +    +R  IL+G  IA  NI+ II +IR+       K  ++ +++ TE Q  +IL
Sbjct: 361 TLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++++E  +L     ++  +L+   + ++ +  E+ +VK+ +      
Sbjct: 421 DMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G +R T  E  R +   L + +I+ E + +  +N+G+I+                ++ L+
Sbjct: 475 GDKRRTHIEEERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D +   L A   D +++ +  GK Y +    L   S +  G  I  L+ +   + I
Sbjct: 533 TIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
                  V+D   +L+ V+ +G        E       G   +K   E+ +  V  V+  
Sbjct: 593 RAIIKTRVFDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAA 652

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F  D +    R   GV+    ++G           + +  +    
Sbjct: 653 ENEVFIATRKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITE 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G +  +   ++G  +S
Sbjct: 713 NGYGKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVS 748



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/429 (12%), Positives = 140/429 (32%), Gaps = 28/429 (6%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D +   E +   +  ++++ +  L+M 
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMR 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         + K  +  +  + +    + +   +              +I+
Sbjct: 424 LQRLTGLEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTYGDKRRTHIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-------LRKLEEYQIKSELDNL 454
           E    I  ED  K   +      +  +  I   + +S       +  L           L
Sbjct: 484 EERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDTIL 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N    ++ E+             R          +A ++  +
Sbjct: 544 TASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLR---IGEEEKIRAIIKTRV 600

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL-S 567
            +KE   V ++ +G ++              L A+ FKE D L         +  + + +
Sbjct: 601 FDKEKELVFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAAENEVFIAT 660

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G A   P  N+     +   ++ +     ++ +    + +    +L ++  G      
Sbjct: 661 RKGFAVRFPNDNVRPTGRNTMGVKGIELREGDEVVSALLIKEKEMDILTITENGYGKRTR 720

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E  ++ R GK  + +   EK   +V V      + +  +  N  ++   ++ I   SR
Sbjct: 721 LDEYPSHNRGGKGVINLRCNEKTGNIVSVLTALDEEELVCITSNGIIIRTPMNSISRFSR 780

Query: 684 GK-GVRLQS 691
              GV +  
Sbjct: 781 AAQGVIIMK 789


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/744 (37%), Positives = 433/744 (58%), Gaps = 16/744 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   +  KK
Sbjct: 24  DGFERRSIAEFSEQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSELGLTAASKHKK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+VIGK HPHGD + Y+++V +AQPF  RYPLI GQGNFG   D  S AA RYTE
Sbjct: 84  SARTVGDVIGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPDDPKSFAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+T  A  +L   ++  VD++  ++    EP + P++ PN+L NG  GIAVG++T IP 
Sbjct: 144 SRLTAYAHSLLAEAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMGIAVGLSTDIPP 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A +AL+D PE +++ L  ++ GPDFPT   I+   + I++ YR G G  R R
Sbjct: 204 HNLREVVAATIALLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQMYRTGTGSVRQR 263

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           AR+ VE+       I++T +P+QV  S+++E+IA  + AK++PL+ D+RDES  +   R+
Sbjct: 264 ARYEVEQ-----GEIIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLRDESDHEAPTRL 318

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++R +D + LM  +F  +D+E  + +NMNV+++   P+VM L  +L EWL  RR+ 
Sbjct: 319 VIIPRSRQVDAEALMAHLFATTDLEKSYRVNMNVIALDGRPRVMNLKDLLSEWLQFRRQT 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           L RR  +R+  ++ R+EIL GLLIA+LNIDE+IA+IR  D+PK  +++RF LTE Q +AI
Sbjct: 379 LTRRIQWRLAKVENRLEILAGLLIAFLNIDEVIAVIREADEPKAELIARFDLTERQAEAI 438

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RLR L KLEE  IK E   L+AE E +  LL    +  N +  E+++  + +  +  
Sbjct: 439 LEIRLRQLAKLEEIAIKKEQGELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDA-- 496

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +      A +A  + A+I  EP+TVV+S  GWIR+ K H VD  AL +K GD  
Sbjct: 497 ----RRSRLVTRGAAQALAETALISSEPVTVVLSKNGWIRAAKGHDVDPVALSYKAGDGY 552

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            + ++  +T  ++LL   G+AYTL A +L S RG GE +   +            + D  
Sbjct: 553 LVHMNGKSTQSVILLDDTGRAYTLAAHSLPSARGQGEPLTGRLSPPTGAQFNQMVMADDK 612

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRK 669
             +L+  S G  FI    E+++  R GK  + +     +   +++      +A    +  
Sbjct: 613 DAVLLWQSGGYGFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQRIAFASSDGH 672

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           +LI    +IP++S+G+G +L   K G      C  +      + S  RS    + D   +
Sbjct: 673 VLILERAEIPQLSKGRGNKLMGLKSGFTLIAACALVEGEGLKVQSGARSVTLRDVDFDNY 732

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
            G R   G ++P+GF R      +
Sbjct: 733 GGARASRGRILPRGFQRVDALFPA 756


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 450/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT 
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/855 (31%), Positives = 420/855 (49%), Gaps = 117/855 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L+S  +    +  E+  ++E F        RRT F      +     +
Sbjct: 479 KIGVDITDYLHILSSRLRIMGIVKNELSTLREEFVTP-----RRTVFG---FGNAEMDNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710

Query: 676 DQIPE-MSRGK-GVRLQSYKDGG-----------------------------------IS 698
             +   + R   GVR  +  DG                                      
Sbjct: 711 IDVRVFVGRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTE 770

Query: 699 DVICFKI------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           DV+                            +  +   Y +  +     +  RGG G   
Sbjct: 771 DVVIVDEDEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRA 830

Query: 741 --PKGFPRSGKFLSS 753
             P      GK +++
Sbjct: 831 TDPNKTVEIGKLVAA 845



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 29/250 (11%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S    + R      ++   D+    +   E++ + +  +N   IR         + 
Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVG 718

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +SV +  ++  +GD +       T    +  ++  ++  +    +   R  G   + ++
Sbjct: 719 RNSVGVRGINMVDGDKVIS----MTILEHVEATSVERSAYIKRA-INERRSAGADTEDVV 773

Query: 595 DLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            ++ ++D     + D            LL VS  G        E   + R GK       
Sbjct: 774 IVDEDEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDP 833

Query: 647 EEKMKLVVKVTG------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGIS 698
            + +++   V        D + +V    +L+   I+ I    R  KGV +  + K   + 
Sbjct: 834 NKTVEIGKLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVV 893

Query: 699 DVICFKICEG 708
            V      E 
Sbjct: 894 SVERISDPED 903


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/747 (35%), Positives = 441/747 (59%), Gaps = 23/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+  A +AL++ P++++++++++I GPDFPT   I+ S E I + Y+ GRG
Sbjct: 182 TDIPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEEGNA-----VITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWII 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIRNED+PK V++SRF++++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAVLMSRFNISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ ++L S  +    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EPITVV+S+ GW+RS K H ++ S L +K
Sbjct: 477 GD-----DRRSPLQEREE-AKALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS K A    +    + L + G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDSFKGAARGKSNQAAVFLDSTGRSYSIDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++     D +  
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGR 717
           + +  ++L+F +  +P++S+GKG ++ +        G    V    I    +  +    R
Sbjct: 651 ITKAGRMLLFPVSDLPQLSKGKGNKIINITGAQAASGEDLLVWLMVIPPQASITLYFGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KLKFKSEDLQKYRAERGRKGTSLPRGL 737


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/757 (35%), Positives = 439/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ Y+ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + VE     S  I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +Q +   EP+TVV+S +GW+R  K H +D  +
Sbjct: 476 AETY------GDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS+  +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/795 (31%), Positives = 389/795 (48%), Gaps = 57/795 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           KIA+L+   ++  + DIRDE S      ++    R   P +++ +++  + ++  FP NM
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANM 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE+
Sbjct: 361 LALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEV 419

Query: 404 IAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           IA+IR     +   V         E Q DAIL L+LR L  LE  +I  E   L A+   
Sbjct: 420 IALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVAD 479

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E +
Sbjct: 480 FKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIV---PFDGEMSMEDLIPEEDV 531

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V I+  G+         RS       +     +E D ++      + D +L  +  G+ 
Sbjct: 532 VVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRV 591

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y   A  +  G     G+ +  L+    ++ I        +     L++ +  G      
Sbjct: 592 YRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFADKDYLVLATRLGFVKKTR 651

Query: 628 ESEIIANTRKGKTFLKVSSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIP 679
            ++   N   G   +K+  +     +++         D + +V  + + L F+   +Q+ 
Sbjct: 652 LTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLR 711

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GV    ++       +     E   ++ + G  Y +        +  RGG+G 
Sbjct: 712 PMGRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEG-GYAKRTALSEYRVQGRGGLGI 770

Query: 739 LVPKGFPRSGKFLSS 753
            V       G  + +
Sbjct: 771 KVANLVEARGDLVGA 785



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 19/224 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----D 549
           +        LQ +    +   V+ +  G+++  +    D +      A+  +E      D
Sbjct: 618 QPDERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEAD 677

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A  A  TD ++L+S  G++    A +    R  G A   +  +    + +++T  V
Sbjct: 678 QLVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDV 736

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAV 663
                 L VV+  G A     SE     R G   K    V +   +   +    D  V V
Sbjct: 737 VRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLV 796

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    K++   +D++    R  +GV      +G     I   + 
Sbjct: 797 IMAGGKIVRSRVDEVSRTGRNTQGVIFSRAVEGDKVIAITLNVD 840


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/776 (30%), Positives = 392/776 (50%), Gaps = 36/776 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+++     ++ + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 14  VEDVVLEGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMF 73

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +F K AR+VG+V+G  HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+  
Sbjct: 74  DGGYRPDRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPG 133

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +M Q+A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SG
Sbjct: 134 NDGAAAPRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSG 193

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ E     +DNP  +     E LL  I GPDFPTG  I+   + 
Sbjct: 194 IAVGMATNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATIL-GHKG 252

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG   +RA   VEE+ +G  C+VVTE+PYQ     L  KIAEL+   +I  +
Sbjct: 253 IEDAYRTGRGSITMRAVVNVEEL-QGRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGI 311

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            D+RDE S    + ++    R     +++ +++  + ++  F  NM  +  G VP+ + L
Sbjct: 312 ADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLAIVDG-VPRTLSL 370

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
           D  ++ W+AH+ +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     +
Sbjct: 371 DAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAR 430

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q  AIL+++LR L  LE  +I+     L A  ++ +++L S ++Q   
Sbjct: 431 EGLMELLEIDELQARAILDMQLRRLAALERQKIQDRHSELEAMIQEYNAILASEERQRQI 490

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           I+ E+ E+            RRT        D     + +I +E + V I+  G+++   
Sbjct: 491 ISEELAEIVAKHGD-----DRRTHIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTR 543

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
                  +     +     +  D ++      T   +L  +  G+ Y   A  L      
Sbjct: 544 SDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELAEAGRD 603

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    ++ I        Y     L++ +  G        +   N   G   
Sbjct: 604 AKGQHVANLLAFQPDEHIAQVLDLRDYQQAPYLVLATKNGLVKKTRLEDYDTNRTAGVIA 663

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGI 697
           + +  E+++     V+  D + +V    + + F+     +  M R   GV    +++   
Sbjct: 664 INLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTATDDALRPMGRATSGVTGMKFREDD- 722

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + +G          Y +        L  RGG+G  V K     G  + +
Sbjct: 723 ELLAADVVQDGSFVFIVTEGGYAKRTAVDEYRLQGRGGLGIKVAKLAEDRGDLVGA 778



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     ++ P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 616 QPDEHIAQVLDLRDYQQAPYLVLATKNGLVKKTRLEDYDTNRTAGVIAINLRDEDELVSA 675

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                TD +LL+S  G++    A +  + R  G A   +  +    + +++ A V     
Sbjct: 676 QLVSETDDLLLVSRKGQSIRFTATD-DALRPMGRATSGVTGMKFREDDELLAADVVQDGS 734

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE--EKMKLVVKVTGDHVAVVGENR 668
            + +V+  G A      E     R G      K++ +  + +  ++    D V VV E  
Sbjct: 735 FVFIVTEGGYAKRTAVDEYRLQGRGGLGIKVAKLAEDRGDLVGALIVQEEDEVLVVMEGG 794

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           K++  ++  +P   R   GV      D     +   +  E    ++ +    
Sbjct: 795 KVVRSAVTGVPAKGRDTMGVIFAK-PDKNDRIIEVARNSERGLEVEESEDGL 845


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/751 (37%), Positives = 451/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/754 (36%), Positives = 449/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGGD-----IVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S++GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSDKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++     +  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +    K     +++     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEMVSHLMSLPQGASVTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  GSL+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNFRGERGRRGSLLPRGLQRVTRI 744


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/755 (37%), Positives = 446/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ A+++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  EIR   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G  R +   V    KA  ++ ++  E ITVV+S +GWIR  K H VD   L +
Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS        +  + +LL +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     L+ S  G  F+ + S++++  R GK  + +    ++     V+ +  D + 
Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        K+  +S +I       LT + + 
Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKIINIPAAKAKAKEEILSHLIALPKGASLT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPADLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/792 (32%), Positives = 412/792 (52%), Gaps = 64/792 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +++   L   YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  +   +KK
Sbjct: 6   KEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF+ RY L+ GQGNFG++DGD AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +S P + P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN +I+IE+L++YI GPDFPT  II +S   + E+Y  GRG   +RA
Sbjct: 186 NLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDS-GGLKEAYSTGRGKIYIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E +V  G   IV+ EIPYQV K+RL+EKIAEL   KRI  + ++RDES +D   ++
Sbjct: 245 RSEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++ L+ ++T F +NM  L     P++M L  IL  ++ HRR V+ 
Sbjct: 305 VEIKRDAISEVILNNLYSLTSLQTSFGINMVAL-HQGQPKIMSLKDILSAFVCHRRAVVI 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------- 413
           RR +F ++    R+ IL+GL IA  NID +I +IR  +                      
Sbjct: 364 RRVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVFDM 423

Query: 414 -----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                              V  +++ LT+NQ  AIL+L+L  L  LE  ++  E  +LL 
Sbjct: 424 KQRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSLLE 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + + + S+L   K     I  E+  ++E ++       RRT   E+S   +    + +I 
Sbjct: 484 KIKNLISILKDPKCLMRVIRQELLMIQEEYND-----SRRT---EISSNIENINVENLIN 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           ++ + V +S +G+++          K       A   KE D +   L A+T D +LL S 
Sbjct: 536 QKDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSN 595

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +    L   S    G+ I  L+ L+ N+ I        Y +  ++ + +S G  
Sbjct: 596 YGRIYWMKVYRLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQVFMATSSGVV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       G   L ++  +++       G + V +     K++ F   Q+  + 
Sbjct: 656 KKTPLTEFSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRSVG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GV+      G    V      +  + +      + +  N     +  R   G +  
Sbjct: 716 RSAIGVKGIHLLQGD-RVVSLIIPKDKSSILTVTRNGFGKRTNQSEYPIKSRATQGVISI 774

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 775 KVTERNGNVIGA 786



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 77/202 (38%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +V+    A L            + ++ G ++        +  +V + AL+  +GD L  A
Sbjct: 626 DVNERITAILPIQNYTTGHQVFMATSSGVVKKTPLTEFSRPRNVGIIALNLNDGDELIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                ++ ++L +  GK        + S       ++  I L     +V+  +      +
Sbjct: 686 DVTDGSNEVMLFTAYGKVVRFKETQVRSVGRSAIGVKG-IHLLQGDRVVSLIIPKDKSSI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVT-GDHVAVVGENRKL 670
           L V+  G      +SE    +R   G   +KV+     +   V+V   D + ++ +  +L
Sbjct: 745 LTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERNGNVIGAVQVNQSDQIVMITDLGRL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++  + R  +GV L  
Sbjct: 805 VRTRVSEVNIIRRNTQGVMLIR 826


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/760 (35%), Positives = 425/760 (55%), Gaps = 34/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N   V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MSEMG+     FKKS
Sbjct: 39  NESNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKS 98

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+IDGD AAA RYTEAR
Sbjct: 99  ARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEAR 158

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ E +L+ + +D +D+R  ++E   EPVV P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 159 MAKITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHN 218

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPEISI++L+ YI GPDFPTGGI +  ++ I ++YR GRG  RV  R
Sbjct: 219 LGEVVDGIIALIDNPEISIDELITYIKGPDFPTGGI-INGKQGIYDAYRTGRGKLRVAGR 277

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDE+  D   ++  
Sbjct: 278 VEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIE 337

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++ S++  +D++  F + M  L     P+V+ L  IL+++L HR EV+ RR
Sbjct: 338 LKKGEESELILNSLYKFTDLQNTFGVIMLALVDNA-PRVLNLKQILQKYLEHRFEVITRR 396

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+G  IA  NI+E+I IIR        +  ++++F  +E Q  AIL
Sbjct: 397 TEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAKFGFSEIQAKAIL 456

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E  ++KE F      
Sbjct: 457 DMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEGLKLKEDFGDE--- 513

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A      + +I+ E + V ++ +G+++          K   + ++A +
Sbjct: 514 --RRT---EIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATN 568

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD- 601
             E D +K    A   D +L+ +T GK +++    +     +  G+ I  +I+L+ ++  
Sbjct: 569 TVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLDDDEKV 628

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
             I+    ++    L  V+  G     E +      + GK  ++++ ++++  +   +G 
Sbjct: 629 STIIKVREFEKNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIRLNEDDEVMFIGLTSGS 688

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG----GISDVICFKICEGLTW 711
             D +    +N   + FS   +  M  G  GVR  + +D     G + +      +    
Sbjct: 689 GEDEIFAATKNGIAIRFSEKDVRSMGTGAAGVRGINLRDEDKIVGAAIISSEMNKDDARI 748

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +      Y +    L   L  RGG G +  K   ++GK +
Sbjct: 749 LTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNEKTGKIV 788



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 19/225 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +        ++    EK      ++  G ++                A+   E D +   
Sbjct: 623 DDDEKVSTIIKVREFEKNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIRLNEDDEVMFI 682

Query: 555 LHAHTT--DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
                +  D I   + +G A      ++ S  G G A    I+L     IV A +     
Sbjct: 683 GLTSGSGEDEIFAATKNGIAIRFSEKDVRSM-GTGAAGVRGINLRDEDKIVGAAIISSEM 741

Query: 610 --STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAV 663
                ++L ++ +G     +  E    +R GK  +     EK   +V V      D + +
Sbjct: 742 NKDDARILTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNEKTGKIVDVKIVKDDDEIML 801

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +     L+  S+  +  + R   GVR+   ++      I     E
Sbjct: 802 ITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEE 846


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/748 (36%), Positives = 437/748 (58%), Gaps = 23/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++  SL    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   A +KKS
Sbjct: 4   DIEERSLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSASAKYKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G   D  S AA RYTEA
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEA 123

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   AEL+L  + +  V++   ++    E  + P++ P++L NG +GIAVGMAT IP H
Sbjct: 124 RLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMATDIPPH 183

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A L L++ P+ ++ +L + + GPD+PT   I+     +++ Y+ G G  R+RA
Sbjct: 184 NLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHGSVRMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
            + +E+       IV+  +PYQV  +R++E+IA+ + AK++P+L D+RDES  +   R+V
Sbjct: 244 CYTLEKGD-----IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHENPTRLV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L P+ R ++ + +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL  R E++
Sbjct: 299 LVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLHFRIEII 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R++ +  R++IL GLLIAYLNIDE+IAIIR E++PKPV+++RF L++ Q +AIL
Sbjct: 359 RRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPVLMARFELSDRQAEAIL 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L +LEE +I++E   L AE+++++ +L S +Q    +  E+    E F  +   
Sbjct: 419 ELKLRHLMRLEETKIRAEDKALAAERKRLEKILGSERQIKGLLRKELVADVEKFGDA--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   E      A  +QA++  EPITVV+S +GW+R+ KSH VD + L ++ GD  +
Sbjct: 476 --RRSPIVERPS-ATALDEQALLPAEPITVVLSEKGWVRAAKSHEVDPTTLSYRTGDGYR 532

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            +    +    + L + G++YTLPA  L S RG GE +   + +    + V   + +   
Sbjct: 533 ASARGRSNQPAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVVPGAEFVAVLLAEPEI 592

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRK 669
             L+ S  G  F+ +   + A  R GK  L +S+  +    V V     + +A+     +
Sbjct: 593 FYLMASDAGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAIATNTGR 652

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSYNRSE 723
           LL+F + ++P M+RGKGV+L                 +      G   I +  R      
Sbjct: 653 LLLFPLGELPIMTRGKGVKLIHIPSPRSAQRQEAVRALAVVPPGGALQIFAGRRHLTLKS 712

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            DL  + G+R   G  +P+GF +  + +
Sbjct: 713 EDLEFYRGERARRGHTLPRGFRQVEQIV 740


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/747 (36%), Positives = 442/747 (59%), Gaps = 22/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + ++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 3   TESINYEGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 63  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 122

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 123 AMRYTESRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 182

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ ++++LL  + GPDFPT   I+  +E I + Y+LGR
Sbjct: 183 ATDIPPHNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQLGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 243 GSIKMRATWKKED-----GEIVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEADH 297

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  VRIVL P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 298 ENPVRIVLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTEWL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR  + +  +  R+ IL+GL+IA+LNIDE+I IIR ED+PK  +++RF+L++
Sbjct: 358 SFRRTTVTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEPKAELMARFNLSD 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E+  ++ +L S ++    +  EI++  +I
Sbjct: 418 EQAEAILNLRLRHLAKLEEHELQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKI 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E +   KA  +  M+  EP+TV++S  GW+R  K H +D   L +
Sbjct: 478 YASP-----RRSPLVERAE-AKAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSY 531

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L    L S R  GE +   + L     I   
Sbjct: 532 KAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGATIDQL 591

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV- 664
            + +    LL+ S  G  FI + +++IA  + GK  + +    K+   + +      +V 
Sbjct: 592 LIENEDQPLLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVA 651

Query: 665 -GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI-DSAGR 717
                ++LIF    +PE+S+GKG ++ +             V    I E  + +  S  R
Sbjct: 652 LTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVHLLLIEENSSLVFHSGRR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 712 KIVLKPEDLQKFRAERGRKGTQLPRGL 738


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/781 (31%), Positives = 390/781 (49%), Gaps = 66/781 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 9   RIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFRKC 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R+PLI G GNFG+ID D  AA RYTE R
Sbjct: 69  ARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTECR 128

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +  E +LQ ++++ VDF D ++    EP+V P++ P LL NG SGIAVGMAT+IP H
Sbjct: 129 LQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIPPH 188

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALI +P++S  +L+ YI GPDFPTGG I+  +  I E+Y  GRG   +RA
Sbjct: 189 NLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHIL-GQGGIEEAYTTGRGSMTLRA 247

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +     +    I++TE+PYQ  K+ L+EKIAEL+  K+I  + D+RDES  D  
Sbjct: 248 VATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDGI 307

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R   P +++ +++  + ++  F  NM  +  G  PQ++ L   L+ +L  R E
Sbjct: 308 RVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGE-PQLLTLKRSLEVFLRFREE 366

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
            + RR+ + ++  + R  +L+GLL+A  N+D +I +IR+       +  ++  ++L+E Q
Sbjct: 367 AIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSEAQ 426

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E   L  +      +L   ++    I  E+ E+K  F+
Sbjct: 427 ADAILQMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAKFA 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+   +    D       +I  +   ++++ +G+I+                
Sbjct: 487 TP-----RRSRIVQA---DGEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRG 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                 KE D+++     +  DRIL  S  G  Y L A  + SG  +  G  I  L+ + 
Sbjct: 539 RKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIP 598

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      +     L++++ KG       +        G   + +   ++++ V 
Sbjct: 599 REEKITSVIAVQEFSEDEYLVMLTRKGFIKKTPLAAFSHIRSNGLIAISLEEGDQLRWVR 658

Query: 655 KV-TGDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI----- 705
           +    D + +       + F  S DQ+  + R  +GV+  + + G   +++   I     
Sbjct: 659 RTREQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPG--DELVGMDILPAAI 716

Query: 706 ------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                    EG   +      Y +        L  R G+G    
Sbjct: 717 ANRFATPSEDDSGEIEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITAT 776

Query: 742 K 742
           K
Sbjct: 777 K 777



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 80/251 (31%), Gaps = 43/251 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKI 553
                   + +      ++   V+++ +G+I+           S  L A+  +EGD L+ 
Sbjct: 597 IPREEKITSVIAVQEFSEDEYLVMLTRKGFIKKTPLAAFSHIRSNGLIAISLEEGDQLRW 656

Query: 554 ALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTA------- 605
                  D I++ S  G A    A  + L   G        ++L    ++V         
Sbjct: 657 VRRTREQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPGDELVGMDILPAAI 716

Query: 606 ---------------------FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                                  +     +LV+++ G    V   +     R G      
Sbjct: 717 ANRFATPSEDDSGEIEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITAT 776

Query: 645 S-----SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
                 +E+++  +  V  GD + +V     ++   +  I   SR   GVRLQ   +   
Sbjct: 777 KFKAKSNEDQLAALRIVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDD- 835

Query: 698 SDVICFKICEG 708
           + V    +  G
Sbjct: 836 AIVTAAVLPPG 846



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKE-PITVVISNRGW--------IRSLKSHSVD 539
              +  R  T  E    +    ++ +   E P  +VI+  G+         R      + 
Sbjct: 713 PAAIANRFATPSEDDSGEIEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMG 772

Query: 540 LSALHFKE---GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           ++A  FK     D L      +  D ++++++ G        ++ S       ++ L  L
Sbjct: 773 ITATKFKAKSNEDQLAALRIVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVR-LQRL 831

Query: 597 NHNQDIVTAFVYDSTC 612
           + +  IVTA V     
Sbjct: 832 DEDDAIVTAAVLPPGS 847


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/752 (37%), Positives = 439/752 (58%), Gaps = 21/752 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++    V    + + LR   E  YL Y++  + +RA+P + DG KPV RRII++MSE+G
Sbjct: 1   MTDLARPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNPE S+  L E++ GPD+P+   I+ +   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E     +  IVVT +P+QV  S++IE+IA  + AK++P LEDIRDE
Sbjct: 241 TGNGSVRARATFTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDE 295

Query: 305 SAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F  +DME  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK  +++RF 
Sbjct: 356 EWLTFRSNTVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+++Q + IL  +L+ L +LEE +I+ E D L  E+EKI  +L+S  +    I  E+   
Sbjct: 416 LSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGILDSKTKLKKLIRDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +     +A +A  +  ++  EP+TVV+S +GWIR+ K H +D S 
Sbjct: 476 AKKFGDA------RRSPLVQRQAAQAIDETELVPSEPMTVVMSEKGWIRAAKGHDIDAST 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GD+L+ A+ A +T ++  L ++G+AY+ P   L S RG+GE +            
Sbjct: 530 LSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
           VT    +   + ++ S+ G  F+     +I   + GK  L +S+   +    +V  V  D
Sbjct: 590 VTLASAEPETRFVLASTHGYGFVTRFENLIGRNKAGKAMLNLSAGSTVLTPSVVANVATD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKICEGLTW-IDSA 715
            +  V  +  LL  + + +PE+ +GKG ++       ++    V    I  G T  + S 
Sbjct: 650 RIVAVTSSGNLLAIAANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R+     N+L  +LG R   G L+P+G+ + 
Sbjct: 710 QRTMGLKFNELDAYLGARATRGHLLPRGWQKV 741


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 412/757 (54%), Gaps = 30/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGI +  +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L  +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLCLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ E+KE FS    
Sbjct: 427 LEMRLQRLTCLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKIELLEIKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + +    + +I  EP+ V +S +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+A+  LI L  ++ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKV 656
           I+       +     L   +  G       SE  +N   G   + +   +++    VV  
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGVRAIVLDEGDELVSAKVVDK 658

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              H+ +       + F ++ + EM R  +GV      +            +G   +  +
Sbjct: 659 NAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKLLSVS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +           RGG G +  K   ++G  + 
Sbjct: 719 ENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGVRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P  ++     +   +  +    ++  +    + D   KL
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           ++  SI  I E  R   GV+L +  D  +    C K  E      S+ ++ 
Sbjct: 775 MIRVSIKDIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQNL 825


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/769 (33%), Positives = 387/769 (50%), Gaps = 60/769 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            ++  +        ++ VS+   ++  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 4   TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G ++   ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTE+R+T++A+ +L  +D+D VDF+  Y+  + EP V P+KFPNLL NG  G
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A +ALID+P + I+ L+  + GPDFPTGGII+  R+ I  +
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSA 242

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y LGRG   +R +  +E   +    I+++EIPYQV K+ ++E+IAEL+  KRI  + D+R
Sbjct: 243 YHLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLR 302

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R   P++++  ++  + ++T F  NM  L     PQ+M L  +L 
Sbjct: 303 DESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVAL-DAGRPQLMNLKDLLT 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            ++A R  V+ RR+ F +     R  IL GL IA  NIDEII +IR    P         
Sbjct: 362 LFIAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMS 421

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               +        L+  Q  AIL+LRL+ L  L   +I  ELD 
Sbjct: 422 RDWPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E      +L S  +    I  E+  VK  F+       R+T   E    +     + 
Sbjct: 482 LAIEIADYLDILRSRARVQAIIKTELGAVKAEFATP-----RKTVILE---QEGEVEDED 533

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I++E + V +S+ G+++          K      S +  +E D +     A T   +L 
Sbjct: 534 LIQREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLF 593

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G+ Y      L        G+A+  ++ L   + I T               ++  
Sbjct: 594 FSSRGQVYKEKVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFA 653

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ G     + S+ +   R G   +K+   E +  V   T  D V +     + + F   
Sbjct: 654 TTSGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPAS 713

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +     R   GVR  +  +G    VI   I        +   +Y +  
Sbjct: 714 DVRVFSGRTSMGVRGIALAEG--DRVISLSILHHFDATPAERAAYLKQS 760



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 31/228 (13%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---------IRSLKSH-SVDLSALH 544
           RR+    +   +   +    I  E   V+++  G          +R      S+ +  + 
Sbjct: 671 RRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTSMGVRGIA 730

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIV 603
             EGD +               +   +A  L     +     GE I         ++   
Sbjct: 731 LAEGDRVISLSIL----HHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAH 786

Query: 604 TAFVYDSTCKL---------LVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEK 649
           T         +         L V+++G        E   + R GK        K+     
Sbjct: 787 TDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGH 846

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +     V   D + +V +  +L+   ++ I   SR  KGVR+ +  +G
Sbjct: 847 LVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEG 894



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 78/279 (27%), Gaps = 24/279 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
           +     G+       + + ++ T    + E E        +  +  G +R  K       
Sbjct: 611 AAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNKLSDFVDV 670

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + A+   EG+++         D +LL +  G+    PA ++    G        I 
Sbjct: 671 RRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTSMGVRGIA 730

Query: 596 LNHNQDIVTA-----FVYDSTCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLK-VS 645
           L     +++      F      +   +   G        E I    A     +     +S
Sbjct: 731 LAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLS 790

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGISDVIC- 702
             E   + +      V  V         S  +     RG KG+R     K G I  ++  
Sbjct: 791 LPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGHLVAG 850

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           F +      +  +              +  R   G  V 
Sbjct: 851 FPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVF 889


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/783 (30%), Positives = 396/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +  E ++   LR  + + YL+YA+S I +RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 28  DNTDYGLMTGERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDG 87

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 88  GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDD 147

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 148 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 207

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+PE S E+LL+     I GPDFPTG  I+   + I 
Sbjct: 208 VGMATNIPPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIE 266

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D
Sbjct: 267 QAYRTGRGLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIAD 325

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 326 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W++H+ +V+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     
Sbjct: 385 FIRHWVSHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTG 444

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 445 LMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVG 504

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 505 DELDEIVAKYGDE-----RRTRILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRTKAD 556

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 557 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 616

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G   ++
Sbjct: 617 GQHVANLLQFGPDEAIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 676

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V +    L F  D   +  M R   GV+   ++
Sbjct: 677 LMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFR 736

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G   +++   +  G +    +      + +        L  R G G    +     G  
Sbjct: 737 EG--DELLAMDVVWGDSDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSL 794

Query: 751 LSS 753
           + +
Sbjct: 795 VGA 797



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 12/165 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF 606
           D L  A   +  D I+L+S  G +    A +    R  G     +  +      +++   
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADD-EQLRPMGRQTAGVQGMKFREGDELLAMD 745

Query: 607 VY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
           V   DS   LLVV+++G A     SE     R G     V   E     +  V+    D 
Sbjct: 746 VVWGDSDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGAVIVEEDDQ 805

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           V  + ++ K++  ++ ++    R  +GV L   K     ++I   
Sbjct: 806 VMAIMKSGKVIRSNVAEVKRTGRNTQGVTL--AKPDKNDEIISIA 848


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 447/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++     V     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +    K     +V+     + +G+T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQRVTRI 744


>gi|332830576|gb|EGK03190.1| DNA gyrase, A subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 863

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/786 (30%), Positives = 410/786 (52%), Gaps = 57/786 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  MSE+G       
Sbjct: 4   TEDRIIKINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMSELGNASNKPH 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY L+ GQGN G++DGD  AA RYT
Sbjct: 64  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDMPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++AE +L+ +D++ VDF+  +++   EP V P++ PNLL NG SGIAVGMAT++ 
Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLKEPTVLPTRIPNLLINGASGIAVGMATNMA 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E   A +A I+N +I    L++YI  PDFP+GG  +   + +++++  GRG   +
Sbjct: 184 PHNMTEAINATIAYIENKDIDTAGLMQYIKAPDFPSGG-FIYGYQGVIDAFETGRGRVVM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R R  +E  G     IV+TEIPY V K+ LI+ IA+L+  KR+  + ++ DES      +
Sbjct: 243 RGRAEIEMEGN-HEKIVITEIPYLVNKAELIKHIADLVGEKRLEGISNVNDESDRQGMRI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  + ++++  ++ L+ +++ F +N   L  G  P+ + L  ++  ++ HR +V+
Sbjct: 302 VVDIKRDANANVVLNKLYKLTALQSSFSVNNIALVKG-RPKTLNLKEMIGFFVEHRIDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ F ++  + R  IL+GL+IA  NIDE+IAIIR    P+  +     RF+L+E Q  
Sbjct: 361 TRRTIFELRKAEERAHILEGLIIASDNIDEVIAIIRASKSPQEAIERLIERFNLSEIQAR 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E D +      ++ +L + + +   I  E+ EV++ +  +
Sbjct: 421 AIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILINEELRMKVITDELIEVRDKYGDA 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+  A +    +     + + + IS+ G+I+              V   
Sbjct: 481 -----RRT---EIVYASEELNPEDFYSNDEMIITISHLGYIKRTPLSEFRAQNRGGVGAK 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
               ++ D ++    A   + +LL +  GK Y L   ++  G     G AIQ L++++ +
Sbjct: 533 GSETRDTDFIEHIYPASMHNYMLLFTQKGKCYWLRVFDIPEGTKNSKGRAIQNLLNIDSD 592

Query: 600 QDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +             + ++  L+  + +G              + G   + +  E+K+ 
Sbjct: 593 DKVTAFVRVRGFSDTEFINSHYLIFCTKEGVIKKTSLEAYSRPRQNGVNAITIREEDKVI 652

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-----K 704
            V+   G+  + +   N + + F+   +  M R   GVR     + G  +VI       +
Sbjct: 653 EVLMTDGESEILLANRNGRAIRFNEKDVRVMGRTATGVRGMRLDEDGQDEVIGMLAMSKE 712

Query: 705 ICEGLTWIDSAGRSYNRSEN----DLL--------------GWLGKRGGVGSLVPKGFPR 746
             +  T +  + + Y +  N    D                  +  RGG G        +
Sbjct: 713 AQKNETIMVVSEQGYGKRTNLNEKDEEGNEILDENGEIVPVYRITSRGGKGVKTLNITEK 772

Query: 747 SGKFLS 752
           +GK +S
Sbjct: 773 TGKLVS 778



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 34/205 (16%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  +  G I+     +        ++A+  +E D +   L       ILL + +G+A   
Sbjct: 616 IFCTKEGVIKKTSLEAYSRPRQNGVNAITIREEDKVIEVLMTDGESEILLANRNGRAIRF 675

Query: 576 PAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESE 630
              ++  +     G     L +   ++ I    +     K   ++VVS +G       +E
Sbjct: 676 NEKDVRVMGRTATGVRGMRLDEDGQDEVIGMLAMSKEAQKNETIMVVSEQGYGKRTNLNE 735

Query: 631 ------------------IIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
                                 +R GK    ++  EK   +  +  VT +  + ++ ++ 
Sbjct: 736 KDEEGNEILDENGEIVPVYRITSRGGKGVKTLNITEKTGKLVSINSVTDENDLMIINKSG 795

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSY 692
             +   +  I  M R   GVRL + 
Sbjct: 796 ITIRLKVSDIRTMGRATQGVRLINL 820


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/766 (33%), Positives = 417/766 (54%), Gaps = 35/766 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            AA+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA
Sbjct: 62  KAAYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A L LIDNP      L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKEAMAEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPEILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  +  RF+L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVRFNLSH 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++ +E + L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAILRSEEKLNEIIKEELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS       RRT   E+  +      + +I  EP+ V I++ G+++          +   
Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYEKQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L   +  G       SE       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---DGGISDVICFKIC 706
               T    ++ +     + + F +++  E  R  +GVR   +K   D  +   +   I 
Sbjct: 651 AKIATPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKIDTDFVVDADVINNIE 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +  +    +   +        L  R G G +  K  P++G  + 
Sbjct: 711 QEILTVFQ--KGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNIVG 754



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 75/237 (31%), Gaps = 14/237 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +  +  ++       +  G ++              + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAH-TTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            A  +T  +++ ++ G+            GR       +   ++ +  +    + +   +
Sbjct: 653 IATPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKIDTDFVVDADVINNIEQE 712

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKV--SSEEKMKLVVKVTGDHVAVVGENRK 669
           +L V  KG        E     R G     +K+   +   +  V+      + ++    K
Sbjct: 713 ILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSPKTGNIVGEVLVDDTQDLMLLTSIGK 772

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           ++   +  I +  R   GV + +  KD  +  +      +    +D  G     +E+
Sbjct: 773 MIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/795 (31%), Positives = 389/795 (48%), Gaps = 57/795 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           KIA+L+   ++  + DIRDE S      ++    R   P +++ +++  + ++  FP NM
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANM 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE+
Sbjct: 361 LALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEV 419

Query: 404 IAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           IA+IR     +   V         E Q DAIL L+LR L  LE  +I  E   L A+   
Sbjct: 420 IALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVAD 479

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E +
Sbjct: 480 FKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIV---PFDGEMSMEDLIPEEDV 531

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V I+  G+         RS       +     +E D ++      + D +L  +  G+ 
Sbjct: 532 VVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRV 591

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y   A  +  G     G+ +  L+    ++ I        +     L++ +  G      
Sbjct: 592 YRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFADKDYLVLATRLGFVKKTR 651

Query: 628 ESEIIANTRKGKTFLKVSSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIP 679
            ++   N   G   +K+  +     +++         D + +V  + + L F+   +Q+ 
Sbjct: 652 LTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLR 711

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GV    ++       +     E   ++ + G  Y +        +  RGG+G 
Sbjct: 712 PMGRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEG-GYAKRTALSEYRVQGRGGLGI 770

Query: 739 LVPKGFPRSGKFLSS 753
            V       G  + +
Sbjct: 771 KVANLVEARGDLVGA 785



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 19/224 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----D 549
           +        LQ +    +   V+ +  G+++  +    D +      A+  +E      D
Sbjct: 618 QPDERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEAD 677

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A  A  TD ++L+S  G++    A +    R  G A   +  +    + +++T  V
Sbjct: 678 QLVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDV 736

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAV 663
                 L VV+  G A     SE     R G   K    V +   +   +    D  V V
Sbjct: 737 VRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLV 796

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    K++   +D++    R  +GV      +G     I   + 
Sbjct: 797 IMAGGKIVRSRVDEVSRTGRNTQGVIFSRADEGDKVIAITLNVD 840


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 390/767 (50%), Gaps = 41/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   ++  Y+ YA+S I  RA+PD+RDG KPVHRR+I+AM + G      F K
Sbjct: 34  DRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFNK 93

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VGEV+G+ HPHGD S+YD+LVRL Q +  RYPL+ GQGNFG+   D AAA RYTE 
Sbjct: 94  CSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYTEC 153

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  ++  +++ +D+  VDF   Y+ +  EP V PS+FPNLL NG+SGIAVGMAT IP H
Sbjct: 154 RMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIPPH 213

Query: 195 NVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+  AAL ++++P+ + +++    +  I GPDFPTG +I+  R+ I ++YR GRG  
Sbjct: 214 NLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIM-GRKGIEDAYRTGRGSI 272

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +G  C+VV+E+PYQV    L +KIAE +   R+  + DIRDE S    
Sbjct: 273 IMRAVVEVEEI-QGRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRTG 331

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  + ++T F  NM  L  G VP+ +P+D  ++ W+ H+ 
Sbjct: 332 QRLVIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPIDAFIRHWVDHQI 390

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TEN 426
           +V+ RR+++ ++  + R+ IL+GLL A   +DE+IA+IR     +        L    E 
Sbjct: 391 DVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLIDLLEIDEI 450

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL L+LR L  LE  +I  E D +  E E  + +L   ++Q N ++ E+  + E +
Sbjct: 451 QARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDILAKPERQRNIVSDELGTIVEKY 510

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RR+        D     + +I +E + V I+  G+         RS K    
Sbjct: 511 GD-----DRRSII---HGFDGDMSMEDLIPEEDVVVTITRGGYAKRTKVDAYRSQKRGGK 562

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     +  D +       +   +L  +  G+ Y   A  L   S    G+ +  ++  
Sbjct: 563 GVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDASRDSKGQHVANIMAF 622

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y+ +  L++ +  G       SE  +    G   + +  E+++   
Sbjct: 623 QPDEHIAQVLALRNYEISPYLVLATKNGLVKKTRLSEYDSPRTGGLIAVNLRDEDELVGA 682

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
              +  D + +V +  + + F  D   +  M R   GV    ++  G   ++   + E  
Sbjct: 683 GLTSSADDLLLVSKKGQSVRFHADDATLRPMGRSTSGVTGMKFR--GEDSLLSMSVIEEG 740

Query: 710 T---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           T             +        +  R  +G  V K   + G  + +
Sbjct: 741 TDPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTEKGGDLVGA 787



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 16/202 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +        L     E  P  V+ +  G ++  +    D      L A++ ++ D L  A
Sbjct: 623 QPDEHIAQVLALRNYEISPYLVLATKNGLVKKTRLSEYDSPRTGGLIAVNLRDEDELVGA 682

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN-HNQDIV---TAFVYDS 610
               + D +LL+S  G++    A +  + R  G +   +  +    +D +   +     +
Sbjct: 683 GLTSSADDLLLVSKKGQSVRFHADD-ATLRPMGRSTSGVTGMKFRGEDSLLSMSVIEEGT 741

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGE 666
              + VV   G A   + S+     R   G T  K      + +  +     D V VV E
Sbjct: 742 DPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTEKGGDLVGALTVSEDDEVMVVFE 801

Query: 667 NRKLLIFSIDQIPEMSR-GKGV 687
              ++   +D++    R   GV
Sbjct: 802 RGNIVRSRVDEVRLTGRNTAGV 823


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/796 (31%), Positives = 390/796 (48%), Gaps = 59/796 (7%)

Query: 4   DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48
           DN  N+++ VEE                V  V L   +++ Y+ YA+S I  RA+PD+RD
Sbjct: 3   DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+I+ M + G      + K  R+VG+V+G  HPHGD SVYD+L RL QP+  R
Sbjct: 63  GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL++GQGNFG+      AA RYTE +M  +A  +++ +DED VDF D Y+    EP V 
Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224
           PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA   + NPE + E+L    L+ I GP
Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPTG  I+  R  I E+YR GRG    RA   VEE+  G  C+V TE+PYQV    L  
Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQV 300

Query: 285 KIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           KIA+L+   ++  + DIRDE S      ++    R   P +++ +++  + ++  FP NM
Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANM 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L  G VP+ + +DG +  W+AH+ +V+ RR++FR+     R+ IL+G L A   +DE+
Sbjct: 361 LALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEV 419

Query: 404 IAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           IA+IR     +   V         E Q DAIL L+LR L  LE  +I  E   L A+   
Sbjct: 420 IALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVAD 479

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L   ++Q + ++ E+ E+ + +        R+TT       D     + +I +E +
Sbjct: 480 FKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIV---PFDGEMSMEDLIPEEDV 531

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V I+  G+         RS       +     +E D ++      + D +L  +  G+ 
Sbjct: 532 VVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRV 591

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y   A  +  G     G+ +  L+    ++ I        +     L++ +  G      
Sbjct: 592 YRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFTDKDYLVLATRLGFVKKTR 651

Query: 628 ESEIIANTRKGKTFLKVSSE-----EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIP 679
            ++   N   G   +K+  +     +++         D + +V  + + L F+   +Q+ 
Sbjct: 652 LTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLR 711

Query: 680 EMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            M R   GV    ++ D  +  +   +    L  +   G  Y +        +  RGG+G
Sbjct: 712 PMGRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGG--YAKRTALSEYRVQGRGGLG 769

Query: 738 SLVPKGFPRSGKFLSS 753
             V       G  + +
Sbjct: 770 IKVANLVEARGDLVGA 785



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 19/224 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----D 549
           +        LQ +    +   V+ +  G+++  +    D +      A+  +E      D
Sbjct: 618 QPDERIAQVLQVSSFTDKDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEAD 677

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A  A  TD ++L+S  G++    A +    R  G A   +  +    + +++T  V
Sbjct: 678 QLVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDV 736

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAV 663
                 L VV+  G A     SE     R G   K    V +   +   +    D  V V
Sbjct: 737 VRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLV 796

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    K++   +D++    R  +GV      +G     I   + 
Sbjct: 797 IMAGGKIVRSRVDEVSRTGRNTQGVIFSRADEGDKVIAITLNVD 840


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/757 (34%), Positives = 415/757 (54%), Gaps = 30/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + ++   + +I  EP+ V +S +G+++ +     +      K     
Sbjct: 485 ---RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKV 656
           I+       + +   L   +  G       SE  +N   G   + +   +++    VV  
Sbjct: 599 IMATLSTKDFSNERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAKVVDK 658

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              H+ +       + F ++ + EM R  +GV      +            +G   +  +
Sbjct: 659 NAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKLLSVS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +           RGG G +  K   ++G  + 
Sbjct: 719 ENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 13/206 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSNERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P  ++     +   +  +    ++  +    + D   KL
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           ++  SI  I E  R   GV+L +  D
Sbjct: 775 MIRVSIKDIRETGRNASGVKLINTAD 800


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/751 (37%), Positives = 450/751 (59%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LID+P   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT 
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/779 (30%), Positives = 403/779 (51%), Gaps = 44/779 (5%)

Query: 6   ISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +++ N +  E   V+ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM +
Sbjct: 1   MADENDIGTEINRVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFD 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      F K +R+VG+V+G+ HPHGD ++YD++VRL QP+  RYPL++GQGNFG+   
Sbjct: 61  GGYRPDRNFSKCSRVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGD 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTE +M  +A  +++ ++E  VDF+D Y+  + EP V PS+FPNLL NG+SGI
Sbjct: 121 DGAAAPRYTECKMAPLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESI 239
           AVGMAT+IP HN++E+   A  L+ +PE S E+    LL  + GPDFP G  I+  R+ I
Sbjct: 181 AVGMATNIPPHNLREVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATIL-GRKGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG    RA   VEE+ +G  C+VVT++PY V    L  KIA  +   ++  + 
Sbjct: 240 EDTYRTGRGSITQRAVVEVEEI-QGRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIA 298

Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RDES+    + ++    R     +++ +++  + ++  F  NM  +    VP+ + LD
Sbjct: 299 DLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVD-SVPRTLSLD 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
             L+ W+ H+ EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR   + D+ + 
Sbjct: 358 SFLRLWVKHQVEVIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARS 417

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++    + E Q +AIL+L+LR L  LE  +I+ E + +  +  +   +L +  +Q   +
Sbjct: 418 GLMDLLEVDEIQANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYILATPARQREIV 477

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------ 529
           + E+ E+ E +        RRT    ++  D     + +I +E + V I+  G+      
Sbjct: 478 SEELDEIVERYGD-----DRRTKI--MAGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQN 530

Query: 530 --IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--G 585
              R+       +   + +  D ++      T + +L  +  G+ Y   A  L  G    
Sbjct: 531 HLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGSRDA 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ +  L+ L   + I        Y+    L++ +  G       SE  +N   G   +
Sbjct: 591 KGQHVANLLALQPGETIAKVLSIRDYEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAI 650

Query: 643 KVSS----EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
            +       +++     V + DH+ ++      + F+ D   I  + R   GV    +K 
Sbjct: 651 NLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAADDDSIRPLGRVTGGVTGMKFK- 709

Query: 695 GGISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            G  +++   + +  T++       Y +        L  RGG+G  V K   + G  + 
Sbjct: 710 -GDDELLTMDVIQPDTFVFVVTEGGYAKRTPVDEYRLQGRGGLGIRVAKITEQRGDLVG 767



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 20/207 (9%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKE----GDSLKIALHAHTTDRIL 564
            E+    ++ +  G ++  +    D +      A++ +E     D L  A    + D +L
Sbjct: 616 YEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLL 675

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++S  G +    A +  S R  G     +  +    + +++T  V      + VV+  G 
Sbjct: 676 MISRKGMSIRFAADD-DSIRPLGRVTGGVTGMKFKGDDELLTMDVIQPDTFVFVVTEGGY 734

Query: 623 AFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
           A      E     R G       +     + +  ++   G+ V VV E  K++  +ID++
Sbjct: 735 AKRTPVDEYRLQGRGGLGIRVAKITEQRGDLVGGLIVDEGEEVLVVMERGKIVRSNIDEV 794

Query: 679 PEMSRGK-GVRLQSYKDGGISDVICFK 704
           P   R   GV     K G    +I   
Sbjct: 795 PAKGRNTMGVVF--AKPGKNDRIIAVT 819



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 16/216 (7%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKE----IFSKSTDLGRRRTTFCEVSRADKATLQ 511
               K+ S+ +  + ++  +A +   VK+     +  +   G       E        + 
Sbjct: 605 ETIAKVLSIRDYEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVS 664

Query: 512 QAMIEKEPITVVISNRG----------WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             ++  E   ++IS +G           IR L   +  ++ + FK  D L          
Sbjct: 665 ARIVSSEDHLLMISRKGMSIRFAADDDSIRPLGRVTGGVTGMKFKGDDELLTMDVIQPDT 724

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            + +++  G A   P          G  I++        D+V   + D   ++LVV  +G
Sbjct: 725 FVFVVTEGGYAKRTPVDEYRLQGRGGLGIRVAKITEQRGDLVGGLIVDEGEEVLVVMERG 784

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
                   E+ A  R   G  F K    +++  V +
Sbjct: 785 KIVRSNIDEVPAKGRNTMGVVFAKPGKNDRIIAVTR 820


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/854 (31%), Positives = 419/854 (49%), Gaps = 113/854 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  + S   V   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM+
Sbjct: 2   TDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++D
Sbjct: 62  EMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ G
Sbjct: 122 GDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNP I++++++E I GPDFPTGGII+  R  I  +
Sbjct: 182 IAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRSA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+R
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L+
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+        
Sbjct: 360 AFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLME 419

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    + ++L+E Q  AIL LRL+ L  L   +I  EL+ 
Sbjct: 420 RRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNK 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  +      +L S  +    +  E+  +++ F        RRT F      +     + 
Sbjct: 480 IGVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTP-----RRTIFG---FGNAEMDNED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L 
Sbjct: 532 LIVPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLF 591

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L  G     G A+  ++ L   + + T               ++  
Sbjct: 592 FSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F + 
Sbjct: 652 TTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVI 711

Query: 677 QIPE-MSRGK-GVRLQSYKDGG-ISDVICFKICEGLTW---------------------- 711
            +   M R   GVR  +  DG  +  +   +  E  +                       
Sbjct: 712 DVRVFMGRNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAED 771

Query: 712 ------------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                         +  +   Y +  +     +  RGG G    
Sbjct: 772 VVIVDEDEEEIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 831

Query: 742 KGFPRS--GKFLSS 753
                +  GK +++
Sbjct: 832 DPTKATEIGKLVAA 845



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 29/250 (11%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S    + R      ++   D+    +   E++ + +  +N   IR         + 
Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMG 718

Query: 535 SHSVDLSALHFKEGDSLKIA-----LHAHTTDRILLLS---TDGKAYTLPAGNLLSGRGH 586
            +SV +  ++  +GD +        + A + +R   +     + +     A +++     
Sbjct: 719 RNSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDED 778

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----- 641
            E I+  +      ++ +         LL VS  G        E   + R GK       
Sbjct: 779 EEEIETELTDERYAELAS-----REQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDP 833

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGIS 698
            K +   K+     V   D + +V +  +L+   I+ I    R  KGV +  + K   + 
Sbjct: 834 TKATEIGKLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVV 893

Query: 699 DVICFKICEG 708
            V      E 
Sbjct: 894 SVERISDPED 903



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 12/156 (7%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ +  +  ++   I   I E +   + + D+        E+           +  +E +
Sbjct: 741 LEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEEEIETELTDERYAELASREQM 800

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFK-----------EGDSLKIALHAHTTDRILLLSTD 569
            + +S  G+ +   S+   +S    K           E   L  A      D+I+L+S  
Sbjct: 801 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIGKLVAAFPVKAQDQIMLVSDG 860

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           G+   +P   +       + +  + +    + +V+ 
Sbjct: 861 GQLIRVPIEGIRIAGRSTKGVT-IFNTAKGEKVVSV 895


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/796 (31%), Positives = 401/796 (50%), Gaps = 66/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + +++ F  NM  L     P+++ L   L+ +L
Sbjct: 301 DRDGIRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNE-PRLLTLREFLRVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R EV+ RR+ + ++  + R  IL+GLLIA  ++D +IA+IR+       K  +V  F 
Sbjct: 360 DFRVEVITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E   LLA+   +  +L   ++  + I  E++++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDILAKKERIDSIIEEELQQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K I +        R T  E  + +    +  +I  E   ++++ +G+I+ +  ++     
Sbjct: 480 KTIHATP------RRTHIE--QREGEIAETDLIANEQALILVTEQGYIKRMPVNTFESQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +    KE D +   +     D +L  +  G  Y+L A ++   S    G  I  
Sbjct: 532 RATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I +      +     L++++ KG       +        G   + +   ++
Sbjct: 592 LLEIPKGEKITSVVAVSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D V +       + F  D  Q+  + R  KGV+    + G   ++I   I
Sbjct: 652 LRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSG--DELISMDI 709

Query: 706 CEGLTWIDSAGR-----------------------------SYNRSENDLLGWLGKRGGV 736
                    A                                  +     L  L  R G+
Sbjct: 710 LPSQIVAQIAESNEEETEDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGL 769

Query: 737 GSLVPKGFPRSGKFLS 752
           G  V K   ++ K  +
Sbjct: 770 GVRVIKFRKKNDKLAA 785



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 44/271 (16%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSL--- 533
           +          T  G       E+ + +K T   A+ E  ++   ++++ +G+I+     
Sbjct: 572 LNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKGFIKKTALA 631

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  L A+  ++GD L+    A   D +++ S  G A    A +    R  G A 
Sbjct: 632 AFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADS-QQLRSLGRAT 690

Query: 591 QLL--IDLNHNQDIVTAFVY----------------------------DSTCKLLVVSSK 620
           + +  + L    ++++  +                             ++   +L ++  
Sbjct: 691 KGVKSMKLRSGDELISMDILPSQIVAQIAESNEEETEDESEEINPEVANNGPWVLAITMA 750

Query: 621 GNAFIVEESEIIANTRKGKTF--LKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           G    V  + +    R G     +K     +K+  +  V   +   ++ E   ++  S+D
Sbjct: 751 GLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAALHVVNPHEEFMIITERGIIIRQSVD 810

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            I   SR   G+R+Q   +      +     
Sbjct: 811 AITPQSRSAGGIRVQKLDEDDAIAAVALVPP 841


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 422/757 (55%), Gaps = 31/757 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +N+  + L   ++  YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   NQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD+AAA RYTE
Sbjct: 64  KSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ + +D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + +PEISI+ L+E I GPDFPTG +I+  +  I E+Y+ GRG  + R
Sbjct: 184 HNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALIL-GKSGIKEAYKTGRGKIKQR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    I++TEIPYQV K+RLIEKIA+L+  KR+  + DIRDES      ++
Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  +P++++ +++  + +E  F +    L  G  P+++ L  +++ ++ H++EV+ 
Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGE-PKILNLKELIEYYVDHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR++F +     R  I++GL+IA  +IDEII IIR+    D+ K +   +F LTE Q  A
Sbjct: 362 RRTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDKFKLTEVQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E D L    + + S+LNS +   N I  E+ E+KE ++   
Sbjct: 422 ILDMQLKRLSGLEIEKLNAENDELARMIDYLLSILNSEETLINLIIDEMTEIKEKYAD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT        +       + E+E I + ++  G+I+                ++A
Sbjct: 480 ---DRRTQIV---PDEGEIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
            + KEGD +K  +  +T + +L  ++ GK ++L A  +   S    G+AI  +++L   +
Sbjct: 534 GNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLESGE 593

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I             ++++ +  G     +        + G   + +   +K+  V ++ 
Sbjct: 594 RITEMMTLSDLHKNSQIVLQTKNGTIKKTDAENFANIRKNGIIAISLQENDKLISVRQID 653

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDS 714
            +   ++  +N   + F+   +  M R  +GV+          +V+   I  E    +  
Sbjct: 654 KEEELLISTKNGMTIQFNSKDLRSMGRIAQGVKAIKL--DKDDEVVSMNIKGEETYLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +Y +  +        RGG G    K   ++GK +
Sbjct: 712 TENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKVV 748



 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        +  + + K    V+ +  G I+   + +        + A+  +E D L   
Sbjct: 590 ESGERITEMMTLSDLHKNSQIVLQTKNGTIKKTDAENFANIRKNGIIAISLQENDKLISV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + +L+ + +G      + +L S     + ++  I L+ + ++V+  +      L
Sbjct: 650 RQIDKEEELLISTKNGMTIQFNSKDLRSMGRIAQGVKA-IKLDKDDEVVSMNIKGEETYL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+          +      R GK        EK   VV        + + +V  +  +
Sbjct: 709 LVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKVVDTLPVDLDNDIMMVSLSGDM 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  S+  I    R   GV+L++  D     V  
Sbjct: 769 IRLSVRDISITGRNTVGVKLKNLTDDKDRIVSV 801


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/745 (36%), Positives = 443/745 (59%), Gaps = 25/745 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  G+ +KKS
Sbjct: 10  SVETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKAGSKYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEA 134
           AR VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+  D  S AA RYTE+
Sbjct: 70  ARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSADDPKSFAAMRYTES 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ + AE++L  + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT +P H
Sbjct: 130 KLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGTTGIAVGMATDVPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI +A + L++NP+ ++  L EY+ GPD+PT   I+   + +   Y+ GRG  ++RA
Sbjct: 190 NLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQAMYQSGRGSVKMRA 249

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
            W VE+       IVV  +PYQV  SR++E+IA  + A+++P++ D+RDES  +   R V
Sbjct: 250 SWSVED-----GAIVVNALPYQVSGSRVLEQIAAQMQARKLPMVSDLRDESDHEHATRFV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++  +D + LM  +F  +D+E  + +N+N++ +   P V  L+ IL EWL  RR  +
Sbjct: 305 IVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKALNVILGEWLRFRRTTV 364

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR   R+  ++RR+ +L+G LIAYLNIDE+I IIR E++PKP +++RF L++ Q +AIL
Sbjct: 365 QRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPALIARFGLSDVQAEAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+LR+L KLEE +I+ E D L AE++K++  L S  +    I  E+  V E+       
Sbjct: 425 DLKLRNLAKLEEMKIRGEQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVH------ 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G  R +        +   +  +   +P+T+V+S  GWIR+ K H +D ++L++K GD  K
Sbjct: 479 GDERRSPITQREEARPFSETELASSDPLTIVLSEMGWIRAAKGHDIDPTSLNYKSGDGFK 538

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           +A    +    ++  + G+AY++ +  L S RG GE +   I+               + 
Sbjct: 539 LAARGKSNLPTVVFDSTGRAYSIASHALPSARGQGEPLTGRINPPSGATFEGLLTGADSD 598

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH--VAVVGENRK 669
           K L+ S  G  F+   +++ +  + GK  L +    ++     V  GD   VA V    +
Sbjct: 599 KFLLASDAGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGR 658

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           LL+F +  +PEM+RGKG ++          ++  +  V   +  + L  + +  +     
Sbjct: 659 LLVFPLSDLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLE-VTAGKQHLKLK 717

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRS 747
             DL  + G+RG  G+ +PKGF + 
Sbjct: 718 PADLEHYRGERGRRGNKLPKGFQKV 742


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/844 (29%), Positives = 405/844 (47%), Gaps = 119/844 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  ARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+    +ALID+P I + +L++ + GPDFPTG +I+  R  I ++Y  GRG   +R R
Sbjct: 195 LSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALIL-GRAGIRQAYETGRGSVIMRGR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 254 AHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR
Sbjct: 314 LKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R  +L GL IA  NIDE+I +IR+   P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIR 432

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E      +L+
Sbjct: 433 LIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I +E + V +S+
Sbjct: 493 SRLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y     
Sbjct: 545 LGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A+  ++ L H + I T               ++  +++G     + S+
Sbjct: 605 RLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-G 686
            +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   G
Sbjct: 665 FVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGRNSIG 724

Query: 687 VRLQSYKDGGISDVICFKI----------------------------CEGLTWI------ 712
           VR  S  DG    +I   I                             E +  +      
Sbjct: 725 VRGISLGDG--DRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEVAN 782

Query: 713 --------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                 + R + +  +        RGG G        ++   G+
Sbjct: 783 GGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRAT-DTSKTAEIGE 841

Query: 750 FLSS 753
            +++
Sbjct: 842 LVAA 845



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 87/301 (28%), Gaps = 73/301 (24%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
                 G+       +   ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRNKLSDFVQV 668

Query: 539 ---DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR-------- 584
                 A+  +E GD +         D ++L +  G+    P  ++   +GR        
Sbjct: 669 NRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGRNSIGVRGI 728

Query: 585 --GHGEAIQLLIDLNH-----------------------NQDIVTAFVYDS--------- 610
             G G+ I  +  L H                        +D     V +          
Sbjct: 729 SLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEVANGGELSN 788

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV 656
                       +L +S +G        +   + R GK              ++     V
Sbjct: 789 ERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPV 848

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEGLTWID 713
              D + +V +  +L+   +D I   SR  KGV +  + KD  +  V      +G   I+
Sbjct: 849 EHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISEPDGEDEIE 908

Query: 714 S 714
            
Sbjct: 909 E 909


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 420/757 (55%), Gaps = 31/757 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L   +++ YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +
Sbjct: 4   DNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F  RYPL  GQGNFG+IDGD AAA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A+ +L+ +++D VDF   ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++  
Sbjct: 124 VRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMAP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A + +PEISIE L + I GPDFPTG  I+  +  I ++Y  GRG  ++R
Sbjct: 184 HNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYIL-GKAGIKDAYSTGRGKVKLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E   +    IV+TEIPYQV KSRLIEKIA+L+  KRI  + DIRDES      ++
Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  + +ET F +    L  G VP+V+ L  +++ ++ H+++V+ 
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDG-VPKVLNLKELIEYYIEHQKDVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+SF +     R  I++GL+IA  NIDEII IIR+    D+ K +   +F LT+ Q  A
Sbjct: 362 RRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFGLTDKQSQA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  ++ +E   L      + S+LNS +   N I  E+ E+KE FS   
Sbjct: 422 ILDMQLKRLSGLEIDKLNAENKELEETIAYLLSILNSEENLLNLIIDEMEEIKEKFSD-- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+        +     + +IEKE + + ++  G+I+                ++A
Sbjct: 480 ---DRRSKII---PDEGEIDIEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIAA 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
            + KEGD +K     +T + +L  ++ GK Y+L    +   S +  G AI  ++ L   +
Sbjct: 534 GNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLESGE 593

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I             ++++ +  G     +        + G   + +   +++  V ++ 
Sbjct: 594 KITEMMTLSELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISVRQID 653

Query: 658 GDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
            +   ++  +N   + F+   +  M R  +GVR          +V+   I    T  +  
Sbjct: 654 KEEELIISTKNGMTIQFNSADLRSMGRIAQGVRAIKL--DKDDEVVSMNIKGDETYLLVV 711

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +Y +  +        RGG G    K   ++GK +
Sbjct: 712 TENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKII 748



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 80/213 (37%), Gaps = 12/213 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        +  + + K+   V+ +  G I+   + +        + A+  KE D L   
Sbjct: 590 ESGEKITEMMTLSELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISV 649

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + +++ + +G      + +L S     + ++  I L+ + ++V+  +      L
Sbjct: 650 RQIDKEEELIISTKNGMTIQFNSADLRSMGRIAQGVRA-IKLDKDDEVVSMNIKGDETYL 708

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE-EKMKLVVKVT-GDHVAVVGENRKL 670
           LVV+          +      R GK     KV+ +  K+   + V   + + +V  +  +
Sbjct: 709 LVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTEKTGKIIDTLPVDLDNDIMMVSLSGDM 768

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  ++  I    R   GV+L++  D     V  
Sbjct: 769 IRLNVRDISITGRNTVGVKLKNLTDENDRIVSV 801


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/783 (30%), Positives = 395/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V + V+ + L+  + + YL+YALS I ERA+PD+RDG KPVHRR+++AM + 
Sbjct: 38  DNTDYGLMVGQRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDG 97

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 98  GYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDD 157

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 158 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIA 217

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ +     +D+PE S E+LL    E I GPDFPTG  I+   + I 
Sbjct: 218 VGMATNIPPHNMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATIL-GHKGIE 276

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL+  I E +   +I  + D
Sbjct: 277 QAYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIAD 335

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 336 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 394

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
            ++ W++H+ +V+ RR+++  +  + R  IL+G L A   IDE+I +IR+       +  
Sbjct: 395 FIRHWVSHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTG 454

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + + Q DAIL ++LR L  LE  +I  E D L+        +L   ++Q   + 
Sbjct: 455 LMDLLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYADILAKPERQRKIVG 514

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 515 DELDEIVARYGD-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHAGFIKRTKAD 566

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     ++ D +       T + +L  +  G+ Y   A  L  G     
Sbjct: 567 EYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGSRDSK 626

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       SE  +  + G   ++
Sbjct: 627 GQHVANLLQFTPDESIQTVLSIPDYEVADYLVLATRSGKVKKTRLSEYDSPRQGGLIAVR 686

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           +  +      +++         D + +V +    L F  D   +  M R   GV+   ++
Sbjct: 687 LMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMKFR 746

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            G   +++   +  G T    +    + + +        L  R G G    +     G  
Sbjct: 747 AG--DELLAMDVIWGETDKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLTDERGTL 804

Query: 751 LSS 753
           + +
Sbjct: 805 VGA 807



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDR 562
            E     V+ +  G ++  +    D            +     +  D L  A   + TD 
Sbjct: 651 YEVADYLVLATRSGKVKKTRLSEYDSPRQGGLIAVRLMQDESGETADELIGAALCNATDD 710

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV--YDSTCKLLVVS 618
           I+L+S  G +    A +    R  G     +  +      +++   V   ++   LLVV+
Sbjct: 711 IILVSKLGMSLKFRADD-EQLRPMGRQTAGVQGMKFRAGDELLAMDVIWGETDKDLLVVT 769

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFS 674
           ++G A     SE     R G     V   ++    +  VV    D +  + ++ K++  +
Sbjct: 770 NQGFAKRTAISEYRLQGRNGFGVKAVQLTDERGTLVGAVVVSEEDQIMAIMKSGKVIRSN 829

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICF-------KICEGLTWIDSA 715
           + ++    R   GV L     G   ++I            +G T +  +
Sbjct: 830 VSEVKLTGRTTQGVTLAKPDAG--DEIISIARNAETEDEADGDTVVTES 876


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/743 (32%), Positives = 385/743 (51%), Gaps = 34/743 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D+D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I++P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I+VTEIPY V K+RLIE IA+L+  KRI  + D+ DE+      ++    +  
Sbjct: 258 KKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P +++  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + +
Sbjct: 318 NPQVVLNQLYQYTQLQDTVGVIMLAI-DHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+    + +L    +    +  E+ E+K  F        RR
Sbjct: 437 GRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGD-----DRR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E     ++  G+I+          K     +S +  KE 
Sbjct: 492 T---EIETVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEE 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T D +L ++  G+ + +    +  G     G  I  L+ L   + +    
Sbjct: 549 DIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNML 608

Query: 607 -----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  +    + +V+ +G        +     + G   + ++  + +      +G D 
Sbjct: 609 CQSKDTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDM 668

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V   N + + F+ +    M R G GVR     +G   +V+   IC E  T +      
Sbjct: 669 LIVATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEG--DEVVGVCICRENATILTVTENG 726

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
             R  +     +  RGG G    
Sbjct: 727 KGRRSDIDTYRITARGGKGIRNY 749



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 10/205 (4%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
               +     +++ +G I+              L  +   EGD+L         D +++ 
Sbjct: 613 DTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVA 672

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + +G+A      +       G  ++  I L    ++V   +      +L V+  G     
Sbjct: 673 TRNGQAIRFNEEDARPMGRSGHGVRA-IKLAEGDEVVGVCICRENATILTVTENGKGRRS 731

Query: 627 EESEIIANTRKGKTFLKVS-SEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
           +        R GK       S++K+  V +    D V +  +   ++    ++IP  SR 
Sbjct: 732 DIDTYRITARGGKGIRNYDASKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRY 791

Query: 684 GKGVRLQSYKDGGISDVICFKICEG 708
           G GVR+    +     V+     + 
Sbjct: 792 GSGVRVMRLGENDKVMVLARTDHDD 816


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/751 (38%), Positives = 453/751 (60%), Gaps = 23/751 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ EA + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 FGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        ++ + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLTHACGKSSQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R      +DL  + G+RG  G L+P+G  R 
Sbjct: 711 RKLGLKVSDLDNFRGERGRRGGLLPRGLQRV 741


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 444/747 (59%), Gaps = 25/747 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + +  + V+ + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   SEITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  +    VD+   ++   +EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +E+ +A +AL+D P ++++ ++ ++ GPDFPT   I+ SR+ I + Y+ GRG
Sbjct: 182 TDIPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EW+A
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PK V++SRF++++ 
Sbjct: 357 YRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAVLMSRFNISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++ + ++L S ++    I  EI+      
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQDELAKERDDLQAILGSERRLNTLIKKEIQ------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + + D G  R +        KA  +  ++  EPITVV+S+ GW+RS K H ++ + L++K
Sbjct: 471 ADAKDYGDDRRSPLHEREEAKAMSEHEILPSEPITVVLSDMGWVRSAKGHDIEPTNLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  K A    +    + L T G++Y++    L S R  GE +   + L     I    
Sbjct: 531 AGDGFKGAARGKSNQAAVFLDTTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAV 663
           +     K L+ S  G  FI   ++++   + GK  + +    K+   +++  +    +  
Sbjct: 591 MAPDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLA 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAG 716
           + +  ++LIF +  +P++S+GKG ++ +         D  ++ ++   +   +T +    
Sbjct: 651 ITKAGRMLIFPVADLPQLSKGKGNKIINIAGTQAATGDDLLTWLMILPVGASMT-LHFGK 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKG 743
           R       DL  +  +RG  G+ +P+G
Sbjct: 710 RKLKFKAEDLQKYRSERGRKGTSLPRG 736


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 386/743 (51%), Gaps = 34/743 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A ID+P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAI-DHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+ E  +++L    +    +  E+ E+K+ F        RR
Sbjct: 437 GRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDE-----RR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E     ++  G+I+          +     +S +  KE 
Sbjct: 492 T---EIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEE 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T D +L ++  G+ + +    +   S    G  I  L+ L   + +    
Sbjct: 549 DIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMI 608

Query: 607 VYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                       + +V+ +G        +     + G   + ++  + +      +G D 
Sbjct: 609 CQSKDAEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDM 668

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V   N + + F+ +    M R G GVR     +G   +V+   IC EG T +      
Sbjct: 669 LIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTENG 726

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
             R  +     +  RGG G    
Sbjct: 727 KGRRSDIDTYRITARGGKGIRNY 749



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 10/211 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
                +   +      +++ +G I+              L  +   EGD+L         
Sbjct: 607 MICQSKDAEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 666

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A      +      +G  ++  I L    ++V   +      +L V+  
Sbjct: 667 DMLIVATRNGQAIRFNEEDARPMGRNGHGVRA-IRLAEGDEVVGVCICREGGTVLTVTEN 725

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQI 678
           G     +        R GK       S +K+  V +    D V +  +   ++    ++I
Sbjct: 726 GKGRRSDIDTYRITARGGKGIRNYDVSRDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEI 785

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           P  SR G GVR+    +     V+     + 
Sbjct: 786 PLQSRYGSGVRVMRLGENDKVMVLARTDHDD 816



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R +  +   + A+   EGD +           +L ++ +GK               G+ I
Sbjct: 687 RPMGRNGHGVRAIRLAEGDEVVGVCICREGGTVLTVTENGKGRRSDIDTYRITARGGKGI 746

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +   D++ +  +    + D    +L+ S +G    +  +EI   +R   G   +++   +
Sbjct: 747 RNY-DVSRD-KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGEND 804

Query: 649 KMKLVVKVTGDHVA 662
           K+ ++ +   D  A
Sbjct: 805 KVMVLARTDHDDEA 818


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/844 (29%), Positives = 403/844 (47%), Gaps = 119/844 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  ARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R
Sbjct: 195 LVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 254 AHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR
Sbjct: 314 LKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIR 432

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+
Sbjct: 433 LIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I +E + V +S+
Sbjct: 493 SRLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y     
Sbjct: 545 LGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 605 RLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-G 686
            +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   G
Sbjct: 665 FVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIG 724

Query: 687 VRLQSYKDGGISDVICFKIC--------------------------EGLTWIDSAG---- 716
           VR  S  DG    +I   I                           E    +        
Sbjct: 725 VRGISLGDG--DRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTN 782

Query: 717 ------------------------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                   + + +  +        RGG G        ++   G+
Sbjct: 783 GGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRAT-DTSKTAEIGE 841

Query: 750 FLSS 753
            +++
Sbjct: 842 LVAA 845



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 80/262 (30%), Gaps = 37/262 (14%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------L 533
           +   S    + R      ++       L      +    V+ +  G  IR          
Sbjct: 659 RNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFA 718

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQ 591
             +S+ +  +   +GD +            +      +A  L   A    +  G  E I 
Sbjct: 719 GRNSIGVRGISLGDGDRIISMAIV----AHVEAEPWERAAYLKRSAAERRALTGEEEEIV 774

Query: 592 LLIDLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           L+      +++       +            +L VS KG        +   + R GK   
Sbjct: 775 LV-----GEEVTNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIR 829

Query: 643 KVS-----SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKD 694
                      ++     +   D + +V +  +L+   ++ I   SR  KGV +  + KD
Sbjct: 830 ATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKD 889

Query: 695 GGISDVICFKICEGLTWIDSAG 716
             +  V      +G   I++ G
Sbjct: 890 EKVVSVERITEPDGDEEIEAVG 911


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/764 (29%), Positives = 388/764 (50%), Gaps = 36/764 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  ++  YL YA++ I  RA+PD+RDG KPVHRR+++AM + G     +F K
Sbjct: 27  DRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNK 86

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+G+ HPHGD ++YD+LVRL Q +  RYPL  GQGNFG+   D AAA RYTE 
Sbjct: 87  CARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTET 146

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M  +A  +++ +DE+ VDF+D Y+ ++ EP + P++FPNLL NG+SGIAVGMAT+IP H
Sbjct: 147 KMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPH 206

Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     + NP  +    +E+LL  + GPDFPTG  I+   + I ++YR GRG  
Sbjct: 207 NLREVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATIL-GHKGIEDAYRTGRGSV 265

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +   C+VVTE+PYQ     L  KIAEL+   +I  + D+RDE S    
Sbjct: 266 TMRAVVNVEEL-QNRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTG 324

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +++++ F  NM  +  G VP+ + LD  ++ W+ H+ 
Sbjct: 325 QRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPRTLSLDAFIRHWVTHQM 383

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +V+ RR+ +R++  +    IL+ LL A   +DE+IA+IR  +     +  ++    + E 
Sbjct: 384 DVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMELLDIDEL 443

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+++LR L  LE  +I+     L A   + +++L S ++Q   I+ E+ E+ +  
Sbjct: 444 QARAILDMQLRRLAALERQKIQDRHSELEALIAEYNAILASEERQREIISTELGEIVDKH 503

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT        D     + +I +E + V I+  G+++          +    
Sbjct: 504 GD-----DRRTKIL--MGFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGK 556

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596
            +     +  D ++      T   +L  +  G+ Y   A  L        G+ +  L+  
Sbjct: 557 GIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLLAF 616

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        Y  +  L++ + +G        +   N   G   + +   +++   
Sbjct: 617 QPDEHIAQVLDLKDYQQSPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDGDELVSA 676

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
             V+  D + +V    + + F+     +  M R   GV    +++     +    + +G 
Sbjct: 677 QLVSETDDLFLVSRMGQSIRFTATDDALRPMGRATSGVTGMKFREDD-ELLAADVVTDGS 735

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    Y +        L  RGG+G  V K     G  + +
Sbjct: 736 FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGA 779



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 15/214 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     ++ P  V+ + RG ++  +    D +      A++ ++GD L  A
Sbjct: 617 QPDEHIAQVLDLKDYQQSPYLVLATKRGLVKKTRLEDYDTNRSAGVIAINLRDGDELVSA 676

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                TD + L+S  G++    A +  + R  G A   +  +    + +++ A V     
Sbjct: 677 QLVSETDDLFLVSRMGQSIRFTATD-DALRPMGRATSGVTGMKFREDDELLAADVVTDGS 735

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
            + +V+  G A      E     R G        +E+    +  ++    D V VV E  
Sbjct: 736 FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGG 795

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDV 700
           K++  S+  +P   R   GV      K+  I +V
Sbjct: 796 KVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEV 829



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  ++ + F+E D L  A        + +++  G A              G  
Sbjct: 704 LRPMGRATSGVTGMKFREDDELLAADVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLG 763

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I++         +V A +     ++LVV   G       + + A  R   G  F K    
Sbjct: 764 IKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKN 823

Query: 648 EKMKLVVK 655
           +++  V +
Sbjct: 824 DRIIEVAR 831


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/754 (32%), Positives = 418/754 (55%), Gaps = 31/754 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+E+G+ F   +KKS
Sbjct: 3   NINNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RYPLISG GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  +L+ +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MAKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNPE++   L+EYI GPDFPTGGI ++  + I ++Y  GRG  RVR +
Sbjct: 183 LGEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGI-IDGDKGIKDAYMTGRGKVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I++ EIPYQ+ K+ LIEKIAEL+  K+I  + D+RDES  D   V+  
Sbjct: 242 IEIEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D+++ F + M  L     P+V+ L  I++E++ HR EV+ RR
Sbjct: 302 LKKGEEPELILNKLYKYTDLQSTFGIIMLALVNN-TPRVLNLKQIIEEYIKHRFEVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+G  IA  NID II ++R        +  +V ++  T+ Q  AIL
Sbjct: 361 TQFNLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  ++++E   +     ++  +L +  + +  +  E++E+K+ +      
Sbjct: 421 DMKLQRLTGLERDKVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDD--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R T  E  R +     + +I+ E + +  +N+G+++          K     +++ +
Sbjct: 478 ---RRTVIEKERKE--INPEDLIKDEEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++    A   D +++ +  G+ Y +    +   S +  G  I  +I+L  ++ I
Sbjct: 533 TVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRGRLIGNIINLKTDEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                   + +  +++ V+  G       SE       G   +K+   + +  V  +   
Sbjct: 593 RAIIKTRDFSNENEVIFVTKDGTVKKTNLSEFKNINSSGLKAIKLKENDDIIYVGLIEDI 652

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
             + + +  +    + FS +++    R   GV+  + ++G  +   +  K  E  + +  
Sbjct: 653 VNEQLLIATQAGYSIRFSCEELRATGRDTMGVKGLTLREGDTVVSALLIKDIENSSILTI 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               Y +        L  R G G +  +   ++G
Sbjct: 713 TENGYGKRTKIDEYPLQSRIGKGVINLRCSAKTG 746



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 67/506 (13%), Positives = 160/506 (31%), Gaps = 56/506 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I+    +      +  +  +EE  +  + ++     + + K+   EK A ++   RI L
Sbjct: 326 GIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRTQFNLDKA---EKRAHILQGYRIAL 382

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM---LSDMETRFPLNMNVLSMGRVPQ- 353
                     ++  ++     + D +   E +      +D++ R  L+M +  +  + + 
Sbjct: 383 ---------NNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAILDMKLQRLTGLERD 433

Query: 354 --VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
                   I K     R  +      + +   + +    K        I++    I  ED
Sbjct: 434 KVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDDRRTVIEKERKEINPED 493

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLAEKE-----KI 461
             K        LT      +  + L   +  +          +  D+ +   E       
Sbjct: 494 LIKD---EEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQNTVEDDFVENIESAMNLDT 550

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV--SRADKATLQQAMIEKEP 519
             +  +  + +N    EI E  +        GR       +      +A ++      E 
Sbjct: 551 LMIFTNQGRVYNIKVYEIPETSKQ-----SRGRLIGNIINLKTDEKIRAIIKTRDFSNEN 605

Query: 520 ITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT--TDRILLLSTDGK 571
             + ++  G ++              L A+  KE D +           +++L+ +  G 
Sbjct: 606 EVIFVTKDGTVKKTNLSEFKNINSSGLKAIKLKENDDIIYVGLIEDIVNEQLLIATQAGY 665

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEES 629
           +       L +       ++ L  L     +V+A +        +L ++  G     +  
Sbjct: 666 SIRFSCEELRATGRDTMGVKGL-TLREGDTVVSALLIKDIENSSILTITENGYGKRTKID 724

Query: 630 EIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E    +R GK  + +     +   + ++   T + +  +  +  ++  ++D I    R  
Sbjct: 725 EYPLQSRIGKGVINLRCSAKTGSVVSVLSVSTDEELMAITSSGVVIRIAVDDIVLYGRAT 784

Query: 686 -GVRLQSY--KDGGISDVICFKICEG 708
            GV +     KD  +  +   K  E 
Sbjct: 785 QGVIIMKVHGKDEKVVSITRVKSEEN 810


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 230/765 (30%), Positives = 385/765 (50%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI+HAM + G      + K
Sbjct: 12  DRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQDQGFRPDRGYVK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD ++YD+LVR+AQP+  RYPLI GQGNFG+   D AAA RYTEA
Sbjct: 72  SARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSRGNDGAAAMRYTEA 131

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +++ +D + VDF   Y+ +  EP V P++ PNLL NG+ GIAVGMAT+IP H
Sbjct: 132 RLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A    +++ +     ++E + E + GPDFPT G+IV   + I ++Y  GRG  
Sbjct: 192 NLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIV-GTDGIADAYTTGRGSI 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
           R+R    +EE   G   +V+TE+PYQV    +I  IAE +   +I  +  I DE S    
Sbjct: 251 RMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGIAQIDDESSDRIG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R     +++ +++  S ++T F  NM  +  G VP+ + LD I++ ++AH+ 
Sbjct: 311 MRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDG-VPRTLRLDQIIRLYVAHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           EV+ RR+ + ++  + R  IL+GL+ A   +DE+IA+IR     D+ +  ++    + E 
Sbjct: 370 EVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARVGLMELLDVDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL ++L  L  LE  +I  EL  +  E      +L   ++Q   +  E++E+ +  
Sbjct: 430 QARAILAMQLGRLAALERQKIFDELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKH 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                   RRT       A+     + +I +E + V I+  G+         RS K    
Sbjct: 490 GDE-----RRTRII---AAEGDVRDEDLIAQEDVVVTITETGYAKRTKTELYRSQKRGGK 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDL 596
            +     K+ D +       T D IL  +T G+ Y + A  L        G+ +  L+ L
Sbjct: 542 GVQGAALKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPDMNRAARGQHVANLLAL 601

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I        Y+    L++ + +G       +E  +N   G   + +  ++++   
Sbjct: 602 QTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFDSNRSGGIVAVNLKDDDELVGA 661

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC-EG 708
              +  D + +V E+ + + F  +   +  M R   GV    + +     ++   +  +G
Sbjct: 662 ALCSADDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRFNED--DQLLAMNVVRDG 719

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +    Y +  +        RGG G L  +   R G  + +
Sbjct: 720 AYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGA 764



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        +     E  P  V+ + RG  +  +    D +      A++ K+ D L  A
Sbjct: 602 QTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFDSNRSGGIVAVNLKDDDELVGA 661

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFVYDSTC 612
                 D +LL+S  G++    A +    R  G A   ++ +  N +  ++   V     
Sbjct: 662 ALCSADDDLLLVSEHGQSIRFHAND-EQLRPMGRATSGVLGMRFNEDDQLLAMNVVRDGA 720

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGD-HVAVVGENR 668
            LLV +S G A   +  E  A  R GK  L V        +   V V  D  +  +    
Sbjct: 721 YLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITSGG 780

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            ++  +  Q+    R  KGVRL +  +G     +     +  
Sbjct: 781 GVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIAVARNDEDSA 822


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/772 (33%), Positives = 421/772 (54%), Gaps = 31/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +++ +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++A
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  IV
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIV 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + +
Sbjct: 240 EAYKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLEL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P+      
Sbjct: 358 LCLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  
Sbjct: 418 MERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKT 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE FS       RRT   E+  + ++   + +I  EP+ V +S++G+++ +   +
Sbjct: 478 ELLEVKEQFSSP-----RRT---EIQESYESIDTEDLIANEPMVVSMSHKGYVKRVDLKA 529

Query: 538 VDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHG 587
            +      K        E D ++    A+T D +L ++  G+ Y L    +        G
Sbjct: 530 YERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMG 589

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
           +AI  LI L  ++ I+       +     L   +  G       SE   N    G   + 
Sbjct: 590 KAIVNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIV 649

Query: 644 VSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++    VV     H+ +       + F ++ + E+ R  +GV      +      
Sbjct: 650 LDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVG 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 AVVISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQKTGNLVG 761



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 600 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGA 659

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++     H   +  +    ++  +    + D   K
Sbjct: 660 KVVDKNAKHLLIASYLGMFIKFPLEDVREIGRHTRGVMGIRLNENDFVVGAVVISDDGNK 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +        +  V+ V  +   + ++  + 
Sbjct: 720 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQKTGNLVGVISVDDENLDLMILTASA 779

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           K++  SI  I E  R   GV+L +  D  +    C K  E      S+ ++ 
Sbjct: 780 KMIRVSIKDIRETRRNASGVKLINTADKVVYVNSCPKEEEPENLETSSAQNL 831


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/775 (30%), Positives = 411/775 (53%), Gaps = 49/775 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR++  M E+G+     +KK
Sbjct: 5   EKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG+IDGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++AE +L  ++++ VD R  +++   EP V P++ PNLL NG +GIAVGMAT++P H
Sbjct: 125 RMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A ++N  I+I++L+EYI  PDFPTGG  +   + + E+++ GRG   +R 
Sbjct: 185 NLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGG-TIYGYDGVREAFKTGRGRIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EEV     CI+VTEIPYQV K+ ++++ A+L+   ++  + D+ DE+ +    +++
Sbjct: 244 KAHFEEVDN-RDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++ ++F  + +++ F +N   L  G  P+ + L  ++  ++ HR +V++R
Sbjct: 303 VLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNG-RPEQLNLKDLIYHFVEHRHDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           R+ + ++    +  IL+G +        +D  I IIR+ D P   K  ++  F L+E Q 
Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKEFELSEIQS 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+LRL  L  +E  +I+ E + ++A    ++ +L   +++   I  E+ EVK  +  
Sbjct: 422 QAILDLRLARLTGMELNKIREEYEQIMALIMDLEDILAHKERRTEIIKNELIEVKAKY-- 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R +  E S  D     + +I  E + + ISN G+I+              V  
Sbjct: 480 ----GDDRRSIIEYSGGD--ISMEDIIPNEQVVITISNAGYIKRTPVNEYKTQARGGVGQ 533

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598
            A   ++ D ++          +L  +  GK + L    +  G     G AIQ LI+++ 
Sbjct: 534 KASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPEGGRNTKGRAIQNLINIDS 593

Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            +D V AF+         Y ++  +++ + KG        +     + G   + +  +++
Sbjct: 594 -EDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYSRPRQNGIVAITIKEDDE 652

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +      TG   V +  ++ K + F  +++  + R G GVR  S+ D    +VI     E
Sbjct: 653 LLEARLTTGSSQVMMAVKSGKAIRFPEEKVRSVGRSGSGVRGISFDDEKNDEVIGMITIE 712

Query: 708 G---LTWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
                T +  +   Y +               +  RGG G        ++GK ++
Sbjct: 713 NPKEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITEKTGKLVA 767



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 86/235 (36%), Gaps = 25/235 (10%)

Query: 509 TLQQAMIEKEPI----TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAH 558
              Q + ++E I     ++ + +G I+              + A+  KE D L  A    
Sbjct: 601 ICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYSRPRQNGIVAITIKEDDELLEARLTT 660

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFVYDS--TCKLL 615
            + ++++    GKA   P   + S    G  ++ +  D   N +++     ++     +L
Sbjct: 661 GSSQVMMAVKSGKAIRFPEEKVRSVGRSGSGVRGISFDDEKNDEVIGMITIENPKEETVL 720

Query: 616 VVSSKGNAFIVEESE-------IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVV 664
           VVS  G        +            R GK    +S  EK   +V +      D + ++
Sbjct: 721 VVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITEKTGKLVAIKSVSQEDDLMII 780

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            ++   +  S++ +  M R   GVRL + K+      +   + E    IDS    
Sbjct: 781 NKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKVMKEDDNEIDSGEEK 835


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 399/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP+ SIE++LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRL+E+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVIINRLYKFTDVQVTFGANMLAL-DKNLPRTMSIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  F  +E Q  
Sbjct: 363 RRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFGFSEAQSL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E + LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTTIEMDAGD-VRDIEDIIADESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    LL+ + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEEDFVVSCQVVTDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRNGDVLGA 757



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 17/231 (7%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+    ++ + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H  +  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEEDFVVSCQVVTDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRNGDVLGAISVTDFDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + +  ++  +  M R   GVRL + ++G           E L+    +G +
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD-----TLVAMEKLSVNTESGET 819


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|332287451|ref|YP_004422352.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/762 (33%), Positives = 402/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLAL-DKNLPRTMNIHRMISAWVRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN D     K  ++ +F  TE+Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEKFGFTEHQSI 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   EP+ + IS   +++          K     +S
Sbjct: 483 ------RRTTIEFDADDIRDIEDIIT-NEPVIITISGDDYVKRMPVKVFREQKRGGHGVS 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 13/230 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   A L     E      + +  G ++ +            + AL   +GD L  
Sbjct: 594 IRPGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIA 653

Query: 554 ALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A+H  + D +++L +  G A   P   +         ++ +   N    +V   +     
Sbjct: 654 AVHITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G     +  +     R G       +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           + +  ++  +  M R  +GVRL   K+G  +  +    + E  T ++   
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDETLMNIEE 823


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/770 (33%), Positives = 398/770 (51%), Gaps = 61/770 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D  SN   +V    + +S+   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 22  GGDGASNDGAIVPSAHENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 81

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EMGLD   +++KSA ++GEV+GK HPHGD S+YD+LVR+AQ F  R  LI GQGNFG+I
Sbjct: 82  HEMGLDHTKSYRKSAAVIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSI 141

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ ++++++L  +D++ VDF+  Y+    EP+V P+++PNLL NG  
Sbjct: 142 DGDKPAAMRYTECRLARISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAG 201

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  LA+ID P+I + +L+E I GPDFPTGG+I+  R  I  
Sbjct: 202 GIAVGMATNIPPHNLGEVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMIL-GRAGIKS 260

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +R +  +E  G     I++ E+PYQV K+ ++EKIAEL+  KRI  +  +
Sbjct: 261 AYETGRGSVIMRGKAHIETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAV 320

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R    D+++  ++  + +++ F  N+  L+ G  P+ M L  +L
Sbjct: 321 RDESDRQGYRVVIEVKRDAVADIVLNQLYRYTPLQSSFGCNLVALN-GGKPEQMNLVDML 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413
           + ++  R EV+ RR+ F +  +  R  +L GL IA  NIDE+IA+IR    P        
Sbjct: 380 RAFVGFREEVVTRRTKFLLNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLM 439

Query: 414 ---------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                +      ++L+E Q  AIL+LRL+ L  L   +I  EL+
Sbjct: 440 ERRWPAKDVAPLIALIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELN 499

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + AE      +L+S  +  + +  E+ EV+E F+       RRT   E+  +      +
Sbjct: 500 LIGAEIADYLDILSSRARVLDIVRTELGEVREEFANP-----RRT---EIIDSGYEHDDE 551

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +++ G+I+                 S +  K+ D +      +T   +L
Sbjct: 552 DLIAREEMVVTVTHGGYIKRVPLAAYRAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 611

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             ST G AY L    L     +G G+A+  L+ L   + I T               ++ 
Sbjct: 612 FFSTRGIAYKLKVWKLPLAQPQGRGKAMVNLLPLQAGETITTIMPLPEDEGSWDSLDVMF 671

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLV-VKVTGDHVAVVGENRKLLIFS 674
            +++G     + S+ +   R GK  +K+  E + +  V V    D V +       + F 
Sbjct: 672 ATTRGTVRRNKLSDFVQVNRNGKIAMKLDDENDGIIGVEVCSASDDVLLTSSAGYGIRFP 731

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           +D +    SR   GVR      G    VI   I  G         SY + 
Sbjct: 732 VDDVRVFNSRNSVGVRGIRM--GASDHVISMAIMRGFAATPEERVSYIKQ 779



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEE--KMKLVVKVTG-D 659
           +  +   +L ++ +G        +   + R GK  +KV       E  ++     V   D
Sbjct: 820 MGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKG-IKVTDVSKEGEIGQLVGAFPVEDSD 878

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDV 700
            + +V  + +L+   +D I   SR  KGVR  ++ KD  +  V
Sbjct: 879 QIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAV 921


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 448/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  L++Y+ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        +V+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++    +  E++   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCESLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I   
Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + +    ++     V     D + 
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +    K     +V+     + +G+T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQRVTRI 744


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/755 (32%), Positives = 402/755 (53%), Gaps = 31/755 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+   +A +KS
Sbjct: 14  RIDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           + +VGE +G  HPHGD ++YD+LVR++Q F  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 74  SSVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEAR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+ ++E +L  ++++ VDF   Y++   EP V P+  PNLL NG+SGIAVGM+T++P HN
Sbjct: 134 MSPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVGMSTNVPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +A + LID+PE SI  L+E++ GPDFPTG   +  RE+I  +Y  GRG  RVRA 
Sbjct: 194 LREVIDATIHLIDDPECSIPDLMEHVKGPDFPTGA-NIVGREAIHSAYTTGRGRLRVRAE 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +  E+  +    IV+TE+P+Q  KSRL+E+IAE +   +I  + D+RDES  D   +   
Sbjct: 253 FEREQADK-RERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDRDGIRIAID 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D++   + +   +E  F +    L  G+ PQV+ L   L+ ++ HR++V+ RR
Sbjct: 312 LKRGANADVVENQL-LEHHLERTFGVINLALVDGQ-PQVLDLKETLEHYVEHRKDVVRRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S + +   + R  IL+G L A  N+D ++ +IR  +     K  +   F  +E Q + I+
Sbjct: 370 SEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEALSDEFDFSEAQAEHIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  LE  +I  E D L+ E E+++++L +  +    I  E+RE++E +      
Sbjct: 430 RMQLGSLTSLERNEIDEEYDALVEEIERLETILANESELLGVIKEELREIREEYGD---- 485

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
             RRT+  E        L + +I +E   ++++   +++ +   + D            +
Sbjct: 486 -DRRTSIIEGGDT---VLHEDLIPEEDSLILVTEDDYVKRMPVSAFDPQGRGGKGIIGAN 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KEGD +     A+T D +L  +  GKAY +   ++   S    G++   ++DL+ ++++
Sbjct: 542 LKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEEL 601

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    L +V+  G     E S        G     +   +++  V    G 
Sbjct: 602 TAVVNTDDFDDEEFLTMVTENGYVKRTEASAFERVRSSGLIAASLEEGDRLVDVTVTDGS 661

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +   N   + F   +   M R  +GV     + GG S V      E  + +     
Sbjct: 662 ADLLIATRNGMAIRFPESEARAMGRTARGVNGIKLQ-GGDSVVGLVTADESRSLLTITEN 720

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +           R G G +  K   R+G   +
Sbjct: 721 GYGKRTPFSEYRTQSRYGKGLIDIKTGNRNGPVAA 755



 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 18/218 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +      A +     + E    +++  G+++        +  S  L A   +EGD L   
Sbjct: 596 DPDEELTAVVNTDDFDDEEFLTMVTENGYVKRTEASAFERVRSSGLIAASLEEGDRLVDV 655

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                +  +L+ + +G A   P       R  G   + +  I L     +V     D + 
Sbjct: 656 TVTDGSADLLIATRNGMAIRFPESE---ARAMGRTARGVNGIKLQGGDSVVGLVTADESR 712

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            LL ++  G       SE    +R GK  + + +  +   V  V      D + V+ ++ 
Sbjct: 713 SLLTITENGYGKRTPFSEYRTQSRYGKGLIDIKTGNRNGPVAAVESVSEDDDLVVMSDDA 772

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++      +  + R  KGV +      G   V    +
Sbjct: 773 QIMRIHAADVSRVGRNTKGVIVMRL--AGDDRVASVDV 808


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/788 (31%), Positives = 390/788 (49%), Gaps = 68/788 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTQPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ + VDF DT++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQIL-GRSGIKDAYISGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R     +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGE-PQILNLKDFLGVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R +V+ RR+++ ++  + R  IL+GLL+A  N+D II +IR        K  +V +F 
Sbjct: 360 EFRVQVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I++E   L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDILQRRERVDQIIQEELTQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K   +       RRT   E            +I  E   ++++ +G+I+ +  ++     
Sbjct: 480 KSTHATP-----RRTQIVEEEGGIVDI---DLIANEQAVILLTEQGYIKRMPVNTFGQQS 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 S    KE D ++  L     D+IL  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++ +G       S        G   + +S  ++
Sbjct: 592 MLPIPKDEKITSMVAVSEFTEDQYLVMLTRQGYIKKTALSAYANIRANGLIAITLSEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+  + R  +GVR    K  G  ++I   I
Sbjct: 652 LRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVRSMKLK--GTDEIISVDI 709

Query: 706 CEGLT-------------------------------WIDSAGRSYNRSENDLLGWLGKRG 734
             G                                  +      Y +        L  R 
Sbjct: 710 LPGQVVANIGTSEDEIEDENLESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRA 769

Query: 735 GVGSLVPK 742
           G+G    +
Sbjct: 770 GMGVKAIR 777



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 42/235 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + +  +   ++   V+++ +G+I+     +        L A+   EGD L+ 
Sbjct: 595 IPKDEKITSMVAVSEFTEDQYLVMLTRQGYIKKTALSAYANIRANGLIAITLSEGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRG---------------------HGEA 589
              A   D I++ +  G A    A N      GR                       G+ 
Sbjct: 655 VRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVRSMKLKGTDEIISVDILPGQV 714

Query: 590 IQLLIDLN---HNQDIVTAFVYDSTCKL----LVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +  +        ++++ +  + +    +    L +++ G    V  ++     R G    
Sbjct: 715 VANIGTSEDEIEDENLESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVK 774

Query: 643 KV---SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
            +   ++++++  +  V   D + +V     ++  ++D I   SR   G+R+Q  
Sbjct: 775 AIRFKNAQDQLAAIHIVNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGIRVQRL 829


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/744 (36%), Positives = 427/744 (57%), Gaps = 26/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +SLR   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A FKKSAR
Sbjct: 12  ETLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKKSAR 71

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+VIGK HPHGD + Y+++V +AQ F  RYPLI GQGN+G   D  S AA RYTE+R+
Sbjct: 72  TVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSPDDPKSFAAMRYTESRL 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A+++L  + +  VD++  ++    EP+V P++ PNLL NGT+GIAVGMAT IP HN+
Sbjct: 132 TRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGTTGIAVGMATDIPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+ +A + L++ P   +E L + I GPDFPT   I+  R  I   Y+ GRG  ++RA W
Sbjct: 192 REVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEISAMYKTGRGSLKMRAAW 251

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314
            VE+       +VV  +P+QV  S+++E+IA  + A+++P++ D+RDES  +   R V+ 
Sbjct: 252 RVED-----GAVVVHALPHQVSGSKVLEQIAAQMQARKLPMVADLRDESDHEHPTRFVVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
           P++  +D D LM  +F  +D+E  + +N+NV+ +   P V  L  IL EWL  RR  + R
Sbjct: 307 PRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSLATILLEWLEFRRTTVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R   R++ + +R+ IL+G L+AYLNIDE+I I+R ED+P+P +++RF LTE Q DAIL+L
Sbjct: 367 RLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPALMARFQLTELQADAILDL 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +LR+L KLEE +I+ E + L  E++ +   L S  +    I  E+  V            
Sbjct: 427 KLRNLAKLEEMKIRGEQNELAEERDDLQKTLGSDARLKTLIKKELESVANDHGD-----D 481

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RR+   E   A   +  +      P+T+V+S +GWIR+ K H +D  AL +K GD  K+A
Sbjct: 482 RRSPIVEREEAKAFSELELTTAD-PLTIVLSEKGWIRAAKGHDIDPEALSYKSGDGFKLA 540

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
               +    ++  + G++Y+LP+  L S RG GE +   I+                 + 
Sbjct: 541 AKGRSNQPTVVFDSTGRSYSLPSHQLPSARGQGEPLTGRINPPSGATFEALLTGVDADRY 600

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH---VAVVGENRKL 670
           L+ S  G  F+   +++    + GK  L +     +     V + D    VA V    +L
Sbjct: 601 LLASDAGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEGRL 660

Query: 671 LIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
           L+F +  +PE+SRGKG ++          ++  +   +   +   +  I +  R      
Sbjct: 661 LVFPLTDLPELSRGKGNKIIGIPTPRAAAREELMVGAVVL-VPGNVLQITAGKRHLKLKF 719

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +DL  + G+RG  G+ +P GF + 
Sbjct: 720 SDLEHYRGERGRRGNKLPNGFQKV 743


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/844 (29%), Positives = 403/844 (47%), Gaps = 119/844 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  ARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R
Sbjct: 195 LVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 254 AHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR
Sbjct: 314 LKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIR 432

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+
Sbjct: 433 LIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I +E + V +S+
Sbjct: 493 SRLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y     
Sbjct: 545 LGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 605 RLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-G 686
            +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   G
Sbjct: 665 FVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIG 724

Query: 687 VRLQSYKDGGISDVICFKIC--------------------------EGLTWIDSAG---- 716
           VR  S  DG    +I   I                           E    +        
Sbjct: 725 VRGISLGDG--DRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTN 782

Query: 717 ------------------------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                   + + +  +        RGG G        ++   G+
Sbjct: 783 GGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRAT-DTSKTAEIGE 841

Query: 750 FLSS 753
            +++
Sbjct: 842 LVAA 845



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 80/262 (30%), Gaps = 37/262 (14%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------L 533
           +   S    + R      ++       L      +    V+ +  G  IR          
Sbjct: 659 RNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFA 718

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQ 591
             +S+ +  +   +GD +            +      +A  L   A    +  G  E I 
Sbjct: 719 GRNSIGVRGISLGDGDRIISMAIV----AHVEAEPWERAAYLKRSAAERRALTGEEEEIV 774

Query: 592 LLIDLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           L+      +++       +            +L VS KG        +   + R GK   
Sbjct: 775 LV-----GEEVTNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIR 829

Query: 643 KVS-----SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKD 694
                      ++     +   D + +V +  +L+   ++ I   SR  KGV +  + KD
Sbjct: 830 ATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKD 889

Query: 695 GGISDVICFKICEGLTWIDSAG 716
             +  V      +G   I++ G
Sbjct: 890 EKVVSVERITEPDGDEEIEAVG 911


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/788 (32%), Positives = 398/788 (50%), Gaps = 68/788 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E +    L   + + YL YA+S I  RA+PD RDG KPVHRRI+ AM E+GL    
Sbjct: 2   TTHPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE+R+  ++   +L+ ++ + VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTESRLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+A+I NPEI+  +L++YI GPDFPTG  I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQIL-GRSGIKDAYTNGRGS 240

Query: 250 FRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I+VTE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L  G  PQV+ L   L+ +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGE-PQVLTLKDFLEVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R EV+ RR+++ ++  + R  +L+GLL+A  N+D II +IR+       K  +V +F 
Sbjct: 360 DFRVEVITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I++E + LL +   +  +L   ++  + I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDILERRERVDHIIEEELNQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K   +       RRT   E+ + D   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTTHATP-----RRT---EIIQEDGELIDLDLIANEQAVILLTEQGYIKRMPVSTFGQQS 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 SA   KE D ++  L     D IL  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  N+ I +      +   C L++++ +G       S        G   + +S  ++
Sbjct: 592 MLPIPKNEKITSMLAVSEFSEDCYLIMLTRQGYIKKTVLSAYSNIRANGLIAITLSEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+    R  +GV+    K  G  ++I   I
Sbjct: 652 LRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKLK--GTDEIISVDI 709

Query: 706 CEGLT-------------------------------WIDSAGRSYNRSENDLLGWLGKRG 734
                                                +      Y +        L KR 
Sbjct: 710 LPSQVVANIATSEDEVEDETLETEEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRA 769

Query: 735 GVGSLVPK 742
           G+G    +
Sbjct: 770 GMGVKAIR 777



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 46/229 (20%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++++ +G+I+     +        L A+   EGD L+    A   D I++ +  G A   
Sbjct: 617 IMLTRQGYIKKTVLSAYSNIRANGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHF 676

Query: 576 PAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---------------------- 610
            A +     +GR     ++ +  L    +I++  +  S                      
Sbjct: 677 KADSEQLRPTGR-TARGVKSM-KLKGTDEIISVDILPSQVVANIATSEDEVEDETLETEE 734

Query: 611 --------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-G 658
                      +L +++ G    V  S+     R G     +   +  +++  +  V   
Sbjct: 735 IISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFKNDHDQLVAIHVVNQD 794

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           D + +V     ++  ++D I   SR   GVR+Q   +      +     
Sbjct: 795 DEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPP 843


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/796 (31%), Positives = 400/796 (50%), Gaps = 66/796 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +++V    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +A   +LQ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +  +ALI NP+++  +L  YI GPDFPTGG I+  R+ I E+Y  GRG 
Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++TE+PYQ  K+ LIEKIA+L+  ++I  + D+RDES
Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + +++ F  NM  L     P+++ L   L+ +L
Sbjct: 301 DRDGIRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNE-PRLLTLREFLRVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R EV+ RR+ + ++  + R  +L+GLLIA  ++D +IA+IR+       K  +V  F 
Sbjct: 360 DFRVEVITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E   LL +   +  +L   ++  + I  E++++
Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           K I +        R +  E  + +    +  +I  E   ++++ +G+I+ +  ++     
Sbjct: 480 KTIHATP------RRSHIE--QREGEIAETDLIANEQALILVTEQGYIKRMPVNTFESQN 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +    KE D +   +     D +L  +  G  Y+L A ++   S    G  I  
Sbjct: 532 RATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGSRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+++   + I +      +     L++++ KG       +        G   + +   ++
Sbjct: 592 LLEIPKGEKITSVVAVSEFSEDNYLIMLTQKGFIKKTALAAFSNIRSNGLIAISLEDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D V +       + F  D  Q+  + R  KGV+    + G   ++I   I
Sbjct: 652 LRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKLRSG--DELISMDI 709

Query: 706 CEGLTWIDSAGR-----------------------------SYNRSENDLLGWLGKRGGV 736
                    A                                  +     L  L  R G+
Sbjct: 710 LPSQIVAQIAESNQEETEDESEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGL 769

Query: 737 GSLVPKGFPRSGKFLS 752
           G  V K   ++ K  +
Sbjct: 770 GVRVIKFRKKNDKLAA 785



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 44/271 (16%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSL--- 533
           +          T  G       E+ + +K T   A+ E  ++   ++++ +G+I+     
Sbjct: 572 LNAYHIPTGSRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKGFIKKTALA 631

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                 S  L A+  ++GD L+    A   D +++ S  G A    A +    R  G A 
Sbjct: 632 AFSNIRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADS-QQLRSLGRAT 690

Query: 591 QLL--IDLNHNQDIVTAFVY----------------------------DSTCKLLVVSSK 620
           + +  + L    ++++  +                             ++   +L ++  
Sbjct: 691 KGVKSMKLRSGDELISMDILPSQIVAQIAESNQEETEDESEEINPEVANNGPWVLAITMA 750

Query: 621 GNAFIVEESEIIANTRKGKTF--LKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           G    V  + +    R G     +K     +K+  +  V   +   ++ E   ++  S+D
Sbjct: 751 GLGKRVPVTLLRLQNRAGLGVRVIKFRKKNDKLAALHVVNPNEEFMIITERGIIIRQSVD 810

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            I   SR   G+R+Q   +      +     
Sbjct: 811 AITPQSRSAGGIRVQKLDEDDAIAAVALVPP 841


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/857 (31%), Positives = 423/857 (49%), Gaps = 121/857 (14%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++  T  E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D++ VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALID+P I++++++E I GPDFPTGGII+  R  +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +  +   +L+S  +    +  E+  ++E F        RRT F      +     +
Sbjct: 479 KIGVDITEYLHILSSRLRIMGIVKDELSTLREEFVTP-----RRTVFG---FGNAEMNNE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     ++T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +++G     + S+ I   R GK  +K+  E+++  V   T  D V +   N + + F +
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710

Query: 676 DQIPE-MSRGK-GVRLQSYKDGGISDVICFKI---------------------------- 705
             +   + R   GVR  +  DG    VI   I                            
Sbjct: 711 IDVRIFVGRNSVGVRGINMVDG--DKVISMTILEHVEATSVERSAYIKRAINERRSAGAD 768

Query: 706 CEGLTWIDSAGRS---------------------------YNRSENDLLGWLGKRGGVGS 738
            E +  +D                                Y +  +     +  RGG G 
Sbjct: 769 TEDVVIVDENEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGI 828

Query: 739 LV--PKGFPRSGKFLSS 753
               P      GK +++
Sbjct: 829 RATDPNKTVEIGKLVAA 845



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 29/250 (11%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S    + R      ++   D+    +   E++ + +  +N   IR         + 
Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVG 718

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +SV +  ++  +GD +       T    +  ++  ++  +    +   R  G   + ++
Sbjct: 719 RNSVGVRGINMVDGDKVIS----MTILEHVEATSVERSAYIKRA-INERRSAGADTEDVV 773

Query: 595 DLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            ++ N+D     + D            LL VS  G        E   + R GK       
Sbjct: 774 IVDENEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDP 833

Query: 647 EEKMKLVVKVTG------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGIS 698
            + +++   V        D + +V +  +L+   I+ I    R  KGV +  + K   + 
Sbjct: 834 NKTVEIGKLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVV 893

Query: 699 DVICFKICEG 708
            V      E 
Sbjct: 894 SVERISDPED 903


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/756 (33%), Positives = 416/756 (55%), Gaps = 29/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY+++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++   +L+ +D++ +DFR  +++   EP V PSK P+LL NG++GIAVGMAT+IP HN
Sbjct: 123 MSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ + +L LIDNP+IS  +L+EYI GPDFPTGGI ++ ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGI-IDGKKGIRDAYLTGRGKIRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G + I++ EIPYQ+ K+ LIE+IA L+  K+I  + D+RDES  +   V+  
Sbjct: 242 VKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +++++ F + M  L    VP+++ L  +L E++ HR +V+ RR
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNN-VPKILTLKQMLSEYIGHRFQVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +    +R  IL+G  IA  NI+ II +IR+       K  ++ +++ TE Q  +IL
Sbjct: 361 TLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++++E   L     ++  +L+   + ++ +  E+ EVKE++      
Sbjct: 421 DMRLQRLTGLEREKVEAEYQILEKLILELQDILSHDSKIYDIMKKELLEVKEVY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G  R T  E  R +   L + +I+ E + +  +N+G+I+                +S L+
Sbjct: 475 GDNRRTHIEEERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVSGLN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             + D +   L A   D +++ +  GK Y +    L   S +  G  I  ++ +   + I
Sbjct: 533 TIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNILRIGEEEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
                  ++D   +L+ V+ +G        E       G   +K   E+ +  V  V+ +
Sbjct: 593 RAIIKTRIFDKEKELIFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEAS 652

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            + V +       + F  D +    R   GV+    ++            + +  +    
Sbjct: 653 DNEVFIATRRGFAVRFPNDNVRPTGRNTMGVKGIELREKDEVVSALLIKEKEMDILTITE 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           RGG G +  +   ++G  +S
Sbjct: 713 NGYGKRTRLDEYPSHNRGGKGVINLRCNEKTGNIVS 748



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/450 (14%), Positives = 147/450 (32%), Gaps = 29/450 (6%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D +   E +   +  ++++ +  L+M 
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMR 423

Query: 345 V--LSMGRVPQVMPLDGIL-KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  L+     +V     IL K  L  +  +      + +   +              +I+
Sbjct: 424 LQRLTGLEREKVEAEYQILEKLILELQDILSHDSKIYDIMKKELLEVKEVYGDNRRTHIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-------LRKLEEYQIKSELDNL 454
           E    I  ED  K   +      +  +  I   + +S       +  L           L
Sbjct: 484 EERMEILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVSGLNTIDDDVVDKIL 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N    ++ E+             R          +A ++  +
Sbjct: 544 TASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNILR---IGEEEKIRAIIKTRI 600

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL-S 567
            +KE   + ++ +G ++              L A+ FKE D L        +D  + + +
Sbjct: 601 FDKEKELIFVTKQGIVKKTSLEEFKNINTGGLIAIKFKEEDDLIYVGLVEASDNEVFIAT 660

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G A   P  N+     +   ++ +     ++ +    + +    +L ++  G      
Sbjct: 661 RRGFAVRFPNDNVRPTGRNTMGVKGIELREKDEVVSALLIKEKEMDILTITENGYGKRTR 720

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E  ++ R GK  + +   EK   +V V      + +  +  N  ++   +  I   SR
Sbjct: 721 LDEYPSHNRGGKGVINLRCNEKTGNIVSVLSAFDEEELVCITSNGVIIRTPMHSISRFSR 780

Query: 684 GK-GVRLQSYK-DGGISDVICFKICEGLTW 711
              GV +     D  ++ +   K  E    
Sbjct: 781 AAQGVIIMKVASDEKVASITRIKAEEKEEI 810


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/844 (31%), Positives = 409/844 (48%), Gaps = 117/844 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+I+         + ++S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MAEDDITTPPERPT-GIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+
Sbjct: 60  MHGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE R+ +V++ +L  +D++ V+F+D Y+  + EPVV P++FPNLL NG+
Sbjct: 120 IDGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ EI +  +A+IDNP I++E+L+ +I GPDFPTG I++  R  I+
Sbjct: 180 GGIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVL-GRAGIL 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +R +  VE +      IV+TE+P+QV KS +IEK+A+L+  KRI  + D
Sbjct: 239 SAYSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   V+    R    D+++  ++  + ++T F  NM  L+ G  P+ M L  +
Sbjct: 299 IRDESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALN-GGRPEQMTLPDM 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           L  +++ R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P       
Sbjct: 358 LSAFISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQL 417

Query: 418 --------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL+LRL+ L  L   +I  EL
Sbjct: 418 MTRAWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDEL 477

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + +  E  +   +L+S  +    I  E+  V++ F+       RRT   E+S        
Sbjct: 478 NKIGEEIREYLEILSSRVRVREIIKEELIAVRDEFATP-----RRT---ELSEGAADMDD 529

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK-EGDSLKIALHAHTTDR 562
           + +I +E + V +S+ G+I+          +      + +  K + DS+     A+T   
Sbjct: 530 EDLIPREDMVVTVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTP 589

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------L 614
           +L  S+ G  Y      L   S +  G+A+  ++ L   + I +     S         +
Sbjct: 590 VLFFSSRGIVYKEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNV 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLI 672
           +  +++G     + S+     R GK  +K+  +    L V      D V +   + + + 
Sbjct: 650 MFATTRGTVRRNKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIR 709

Query: 673 FSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------------------CEGLT 710
           F    +     R   GVR  S  +G    VI   I                     EG +
Sbjct: 710 FQATDVRVFAGRNSVGVRGISLGEG--DRVISMAILRHVDATPAERSSYLKMRRAVEGAS 767

Query: 711 ----------------------------------WIDSAGRSYNRSENDLLGWLGKRGGV 736
                                              +  +   Y +  +     +  RGG 
Sbjct: 768 DGDLTAEPTVEEEGAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGK 827

Query: 737 GSLV 740
           G   
Sbjct: 828 GIRA 831



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 27/215 (12%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIA 554
              D+        E + + +  ++   IR            +SV +  +   EGD +   
Sbjct: 681 EDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAGRNSVGVRGISLGEGDRVISM 740

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT------AFVY 608
                    +  +   ++  L     + G   G+              V       A++ 
Sbjct: 741 AILR----HVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEEGAGDVAIDQERYAYLS 796

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------TGDHV 661
            +   +L VS  G        E     R GK  ++ +   +   + ++       +GD +
Sbjct: 797 AAEEMILTVSEFGYGKRSSSYEFRVIGRGGKG-IRATDTSRASEIGQLMAGFPVESGDQI 855

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +V +  +L+   ++ I    R  +GV +    DG
Sbjct: 856 LLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADG 890



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 4/119 (3%)

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KG 686
             E     R   +      +++  +      D V  V     +    +       RG KG
Sbjct: 509 RDEFATPRRTELSEGAADMDDEDLIPR---EDMVVTVSHGGYIKRVPLATYRSQRRGGKG 565

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               S K+   S    F        +  + R     E      L      G  +    P
Sbjct: 566 RAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLASPQSRGKALINMLP 624


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/756 (34%), Positives = 405/756 (53%), Gaps = 74/756 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  D+   +KKS
Sbjct: 7   GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG++DGDSAAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  +D++ VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A LALI NP++S+E+++EYI GPDFPT GI +  +  I ++YR GRG   +RAR
Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGI-INGKAGIEQAYRTGRGKVHIRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E   RG   IVV E+PYQV K+RLIE+IAE +  K+I  +  +RDES +D   ++  
Sbjct: 246 AYIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + M+  F +NM  L   + P++  L  +L  +L HRREV+ RR
Sbjct: 306 VKRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQ-PKIFTLKEMLDAFLRHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS---------- 422
           + F ++    R  IL+ L IA  NIDEIIA+I+      + K  ++SR            
Sbjct: 365 TVFELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLE 424

Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                   LTE Q  AIL+LRL  L  LE  +I SE   LL   
Sbjct: 425 RAGDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +LN+  +    I  E++  K+ F        RRT   E+S +      + +IE+E
Sbjct: 485 AELLYILNTPSRLLEVITEELQASKDAFGDE-----RRT---EISASSADINLEDLIERE 536

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S+ G+++          +      SA   KE D ++  L A+T D IL  S+ G
Sbjct: 537 DVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRG 596

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y +    L   S +  G+ I  L+ L   + I        ++    + + ++ G    
Sbjct: 597 RLYWMKVYQLPLASRQARGKPIVNLLPLQDGERITAILPVAQFEDDKFVFMATANGTVKK 656

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI-DQIPEMSR 683
              S        G   + ++ E+++  V    G + + +  +  K++ F   ++IP +  
Sbjct: 657 TALSAYSKPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRFCEFEEIPVL-- 714

Query: 684 GKGVRLQSYKDG--GISDVICFKICEGLTWIDSAGR 717
                    +DG   + +       EG   +D  G 
Sbjct: 715 --------DEDGNPVLEEAKPVLDEEGNPVLDEEGN 742



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I L   Q +V+  V  +   +L  +  G        E  A +R  K  + +   E+   V
Sbjct: 793 IKLEEGQKVVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERNGKV 852

Query: 654 V----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFK 704
           V     + GD + ++     L+     ++  + R  +GVRL    +     G+  +   +
Sbjct: 853 VGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDELVVGLQRIDEVE 912

Query: 705 ICEGLTWID 713
             E    +D
Sbjct: 913 EDENAVVVD 921


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/728 (36%), Positives = 435/728 (59%), Gaps = 25/728 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++LL+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +
Sbjct: 181 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F 
Sbjct: 236 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E++++  +L S ++  N +  E++      + +   G  R +  +     KA  +
Sbjct: 416 SELEKERDQLQGILASERKMNNLLKKELQ------ADAQAYGDDRRSPLQEREEAKAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
             M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G+
Sbjct: 470 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y +    L S RG GE +   + L     +    +     KLL+ S  G  F+   +++
Sbjct: 530 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++
Sbjct: 590 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 649

Query: 690 QSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +         + G++ +        LT I    R       +L    G+RG  G+ + +
Sbjct: 650 INIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGT-LMR 707

Query: 743 GFPRSGKF 750
           G  R  + 
Sbjct: 708 GLQRIDRV 715


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/816 (32%), Positives = 430/816 (52%), Gaps = 82/816 (10%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NI  +N    ++++AV +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENIFENN----QDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G+   + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+ID
Sbjct: 57  NLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L +++N   ++E++++YI GPDFPTGGII   ++ I+E+
Sbjct: 177 IAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIF-GKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES +D   V+    R    D+++ ++F  + ME+ F + M  ++    P+V  L  +LK
Sbjct: 295 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKE-PKVFNLIELLK 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +I+N       +  +V+
Sbjct: 354 LFLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVA 413

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E+
Sbjct: 414 KFGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+K  F              E+         + +I  E + V I++RG+I+        
Sbjct: 474 LEIKNKFKVP--------RITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 525

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K       A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A
Sbjct: 526 KQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKA 585

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI L  ++ I        +  +  L   +  G       SE       G   + +  
Sbjct: 586 VVNLIQLQPDEKIKAIIPTTDFAESKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAINLDE 645

Query: 647 EEKMKLVVKVTGDH---------------------------------------------- 660
            +++   + V G+                                               
Sbjct: 646 NDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSEENDENAAEGSDDSEK 705

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG--LTWIDSAG 716
            + +V +    L F + ++ +M R  +GV    +K+ G  +V+   + E      +  + 
Sbjct: 706 MLFIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAG-DEVVGAAVIENNDQEVLSISQ 764

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +   +        L  RGG G +  K   R+G  + 
Sbjct: 765 KGIGKRTTAEEYRLTNRGGKGVICMKLTNRTGDLIG 800



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGN 622
            +++  G         +         +  +       ++V  A + ++  ++L +S KG 
Sbjct: 708 FIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVIENNDQEVLSISQKGI 767

Query: 623 AFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                  E     R GK  + +       + + +V+      +  +  + K++   +  I
Sbjct: 768 GKRTTAEEYRLTNRGGKGVICMKLTNRTGDLIGVVMVDDEQDLMALTSSGKMIRVDMQSI 827

Query: 679 PEMSRGK 685
            +  R  
Sbjct: 828 RKAGRNT 834


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 415/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KKS
Sbjct: 3   NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNPE++   L+EYI GPDFPTGGI ++ ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGI-IDGQKGIRDAYMTGRGKVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I++ EIPYQ+ K+ LIE+IA+L+  KR+  + D+RDES  D   V+  
Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  ++++  F + M  L     P+V+ L  IL+E+L HR EV+ RR
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNA-PKVLNLKEILQEYLKHRFEVVTRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+G  IA  NID II IIR        + +++ +++ ++ Q  AIL
Sbjct: 361 TKFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   +     ++  +L+   + +  I  E+  +KE ++     
Sbjct: 421 DMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDD--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R T  E  R +   L + +I+ E + + ++N+G+++          K     +++ +
Sbjct: 478 ---RRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++    A   D +++ +  G+ + +    +   S +  G+ +  +I +  ++ I
Sbjct: 533 TIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRIREDEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKV 656
                   +    +++ V+ +G        E       G   +K+  ++ +  V    K+
Sbjct: 593 RAVIKTRDFSKDNEVVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEDDDIIYVGLIEKI 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V +  +    + F+ D +    R   GV+  + + G           E  + +   
Sbjct: 653 DQEQVFIATKQGYSIRFNSDNVRPTGRDTMGVKSITLRPGDSIVSALLIKDEDGSILTVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        L  R G G +  +   ++G  +S
Sbjct: 713 ENGYGKRTRIDEYPLQARSGKGVINIRCNAKTGAVVS 749



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 131/446 (29%), Gaps = 49/446 (10%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNM 343
           KIA   I + I ++    D +     ++       +    +++  +  L+ +E       
Sbjct: 379 KIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAILDMKLQRLTGLERGKIDAE 438

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
           +               I K     R  +      + +   +      K        I+  
Sbjct: 439 HA-------------EIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDDRRTLIENE 485

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE--------YQIKSELDNLL 455
              I  ED  K   V    LT      +  + +   +  +           I+ +    +
Sbjct: 486 RMEILPEDLIKDENV---ILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTIEDDFVESI 542

Query: 456 AEKEKIDS--LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                +D+  +  +  + +N    EI E  +       L        E  +       + 
Sbjct: 543 ESASNLDTLMIFTNQGRVFNIKVYEIPETSKQ--SRGKLMSNIIRIREDEKIRAVIKTRD 600

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
             +   + V ++  G I+              L A+  KE D +         D+  +  
Sbjct: 601 FSKDNEV-VFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEDDDIIYVGLIEKIDQEQVFI 659

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNA 623
              + Y++   +     +GR     ++  I L     IV+A +  D    +L V+  G  
Sbjct: 660 ATKQGYSIRFNSDNVRPTGRDT-MGVKS-ITLRPGDSIVSALLIKDEDGSILTVTENGYG 717

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIP 679
                 E     R GK  + +    K   VV       G+ +  +  +  ++   +D I 
Sbjct: 718 KRTRIDEYPLQARSGKGVINIRCNAKTGAVVSVLPVTEGEELMAITSSGIVIRMPLDTIA 777

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFK 704
              R   GV +      G   V+   
Sbjct: 778 LYGRATQGVIIMKV--DGAEKVVSIT 801


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 446/752 (59%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + ++++  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SEMIQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ EAA+ LID P  ++++LLE + GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R RA W  E+       +V+T +P+QV  +R++E+IA  +  K++P++ED+RDES  +
Sbjct: 242 SIRQRAVWKKED-----GEVVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P +  +D D +M  +F  +D++  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR +  ++ + RR+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E 
Sbjct: 357 YRRDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMSRFDISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E   L  E++++ ++L S ++  N +  E+    + +
Sbjct: 417 QAEAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELLADSQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     KA  +  ++  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 DD-----DRRSPLHEREE-AKALSENELVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + A    +   +  + + G++YTL   +L S RG GE +   +       I    
Sbjct: 531 AGDSYRAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV-V 664
           +     KLL+ S  G  FI   +++++  R GK  L +    ++   + V +GD + + +
Sbjct: 591 MEADDQKLLMASDAGYGFICTFADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDV--ICFKICEGLTWIDSAGRS 718
            +  ++L+F +  +P+MS+GKG ++ S        G+  +  +          I    R 
Sbjct: 651 TQAGRMLMFPVADLPQMSKGKGNKIISIPSADAAAGVDKLQWLLILPPGSSITIYVGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               + DL     +RG  GS V +G  R    
Sbjct: 711 LIMRDEDLQKVRAERGRRGS-VSRGLQRIDSV 741


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/758 (31%), Positives = 401/758 (52%), Gaps = 35/758 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR+++
Sbjct: 72  VGDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E
Sbjct: 132 ISMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 199 ICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
              AA+ +IDN      E  I+++++ + GPDFPTG  I+  R+ I ++YR GRG  +VR
Sbjct: 192 TINAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E +  G   IVVTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+
Sbjct: 251 AITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ ++++  +F  + ++  F   M  L  G VP+++ +  +L  +L H+ +V+ 
Sbjct: 311 IELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNIKDMLTYYLKHQEDVVT 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+G LIA  NIDE+I IIRN     + K  ++ RF L+E Q  A
Sbjct: 370 RRTKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGA 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR+L  LE  +I++E + L+A+  +   +L    +    I  E+  + + +    
Sbjct: 430 IVDMRLRALTGLEREKIENEYNELIAKIAEYKEILADENKLLGVIKTELAAIADKYGDE- 488

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT+             + +I++E I + ++  G+I+                +  
Sbjct: 489 ----RRTSIT---AYSDDITDEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKG 541

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           ++  + D +      +T + I+  +  G+ Y +    +        G AI  L+ L   +
Sbjct: 542 MNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPGE 601

Query: 601 DIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            +             L++ +  G     +        + G   + ++  +++  V   +G
Sbjct: 602 KVTAIIPIAGFDKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNEGDELIEVKATSG 661

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSA 715
           +  V +V      + F+ + + +  R   GVR      G   +VI  ++  +G   +   
Sbjct: 662 ENDVFLVTAKGMCIRFNEECVRDTGRTSMGVRGIRCDKG--DEVIAMQLDVQGDEMLFVT 719

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +   +           RGG G    +   ++G  +S+
Sbjct: 720 TKGMGKRTELSEFAPQMRGGKGVKCYRITEKTGDIVSA 757



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 66/199 (33%), Gaps = 12/199 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   ++ +  G ++  K  +        L+A+   EGD L         + + L++  G
Sbjct: 613 DKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNEGDELIEVKATSGENDVFLVTAKG 672

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                    +         ++  I  +   +++   +     ++L V++KG     E SE
Sbjct: 673 MCIRFNEECVRDTGRTSMGVRG-IRCDKGDEVIAMQLDVQGDEMLFVTTKGMGKRTELSE 731

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK      +   + + +          + ++     ++      I  + R   
Sbjct: 732 FAPQMRGGKGVKCYRITEKTGDIVSAKAVTNDHDIMMMTNEGIMIRMHCSDITVIGRITS 791

Query: 686 GVRLQSYKDGGISDVICFK 704
           GV+L +    G + V    
Sbjct: 792 GVKLMNIGKDGNTFVASVA 810


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/844 (29%), Positives = 403/844 (47%), Gaps = 119/844 (14%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K 
Sbjct: 15  GIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R
Sbjct: 75  ARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D+D VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN
Sbjct: 135 LQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I ++Y  GRG   +R R
Sbjct: 195 LVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+  
Sbjct: 254 AHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR
Sbjct: 314 LKRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIR 432

Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E +    +L+
Sbjct: 433 LIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILS 492

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I +E + V +S+
Sbjct: 493 SRLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSH 544

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y     
Sbjct: 545 LGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 604

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 605 RLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKLSD 664

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-G 686
            +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   G
Sbjct: 665 FVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIG 724

Query: 687 VRLQSYKDGGISDVICFKIC--------------------------EGLTWIDSAG---- 716
           VR  S  DG    +I   I                           E    +        
Sbjct: 725 VRGISLGDG--DRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTN 782

Query: 717 ------------------------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GK 749
                                   + + +  +        RGG G        ++   G+
Sbjct: 783 GGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRAT-DTSKTAEIGE 841

Query: 750 FLSS 753
            +++
Sbjct: 842 LVAA 845



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 84/272 (30%), Gaps = 37/272 (13%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------L 533
           +   S    + R      ++       L      +    V+ +  G  IR          
Sbjct: 659 RNKLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFA 718

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP--AGNLLSGRGHGEAIQ 591
             +S+ +  +   +GD +            +      +A  L   A    +  G  E I 
Sbjct: 719 GRNSIGVRGISLGDGDRIISMAIV----AHVEAEPWERAAYLKRSAAERRALTGEEEEIV 774

Query: 592 LLIDLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           L+      +++       +            +L VS KG        +   + R GK   
Sbjct: 775 LV-----GEEVTNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIR 829

Query: 643 KVS-----SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKD 694
                      ++     +   D + +V +  +L+   ++ I   SR  KGV +  + KD
Sbjct: 830 ATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKD 889

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             +  V      +G   I++ G     +E +L
Sbjct: 890 EKVVSVERITEPDGDEEIEAVGAEGVMAEPEL 921


>gi|332978327|gb|EGK15053.1| DNA gyrase, A subunit [Psychrobacter sp. 1501(2011)]
          Length = 917

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/816 (30%), Positives = 406/816 (49%), Gaps = 85/816 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM ++  D+   +
Sbjct: 1   MSDSVSPIAIIDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D AAA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  DNP IS E+L  YI GPDFPTGGI +  R  IV++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGI-IYGRAGIVDAYRTGKGRVHI 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TEIPYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR---- 420
           R+EV+ RR+ F +     R  +L+GL +A  NID+IIA I+      + +  ++ +    
Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLGQIWDS 418

Query: 421 ---------------------------------------------FSLTENQVDAILNLR 435
                                                        + L+  QV+AIL ++
Sbjct: 419 GTVVAMLQAAGRGTLEAGDLRSVRPEYIEGEDFKNPFGLIDNGNNYRLSVEQVNAILEMQ 478

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L  LE  ++  E  +LL +  +++S+L    +    I  E+ E+ E F        R
Sbjct: 479 LHRLTGLEHDKLTEEYQDLLRQIAELESILADFDKLMLVIKNEMLEILENFGDE-----R 533

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT   +         ++ +I ++ + + +S  G+ ++         K      SA   KE
Sbjct: 534 RTDIVDSR---TDFSREDLIPEQSVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKE 590

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            D +   +   T   +L  + +G+ ++L    +   S    G  +  +I L+ ++ + T 
Sbjct: 591 DDVIDHLVVTSTHATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLDADEIVTTI 650

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      +  +   ++ G    VE S+       G   + +   +K+       G+
Sbjct: 651 LPIPDLSEEIDSRFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGE 710

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +   + K + F  +    M R  KGVR            +     +    + +   
Sbjct: 711 QEVMLFASSGKAIRFDENDARVMGRTAKGVRGMRIAKDESIKSLVVIEDDVKEILIACEN 770

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +           RGG G +  K   R+G  + +
Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRA 806



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 15/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E+          +           +  G ++           S  L A+  +EGD L  A
Sbjct: 645 EIVTTILPIPDLSEEIDSRFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSA 704

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613
              +    ++L ++ GKA      +        + ++ +  +  ++ I +  V +   K 
Sbjct: 705 RITNGEQEVMLFASSGKAIRFDENDARVMGRTAKGVRGM-RIAKDESIKSLVVIEDDVKE 763

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRK 669
           +L+    G        E  A  R G   + + + E+   +V+ T     D + ++     
Sbjct: 764 ILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGT 823

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           L+   + Q+    R  +GV L     G    ++     E 
Sbjct: 824 LVRTPVAQVATSGRNTQGVTLIRL--GADEALVAMARVED 861


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/793 (30%), Positives = 399/793 (50%), Gaps = 58/793 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  ++ + ++    VS++  L   YL YA+S I  RAIPD+RDG KPVHRRI+++M+E  
Sbjct: 1   MEETSNIQQK--VPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQK 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KK AR+VG+V+GK HPHGD +VYD+LVR+ Q F  RYPLI GQGN+G++DGDS
Sbjct: 59  IGPTGAHKKCARVVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDS 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE+R++++A  +L  +D+D VDF   Y++ + EP V P+KFP LL NG+ GIAV
Sbjct: 119 PAAMRYTESRLSRMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ EI +A +A+I NP++++E+LL  + GPDFPTGG+ +  +  IV++Y  
Sbjct: 179 GMATNIPPHNLGEIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGL-IYGKSGIVQAYTT 237

Query: 246 GRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           GRG   +R R  VE+  +G    +V TEIPYQV K+RL+ KIAE +  KRI  + ++RDE
Sbjct: 238 GRGSITMRGRSQVEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDE 297

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    + + P +++  ++ L+D++  F + +N+      P V+ L   L  +
Sbjct: 298 SDREGMRIVVELKKDIFPQVVLNQLYRLTDLQATFGV-INLSIANGRPAVLSLKDTLSHF 356

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-- 422
           + HRREV+ RR  F ++  + + E+++GL +A  +ID I+A IR    P     +     
Sbjct: 357 IEHRREVVTRRCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLP 416

Query: 423 ----------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       L+E Q  AIL +RL  L  LE  ++  E   L
Sbjct: 417 LRGLGEFLRRAGRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGEL 476

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               E++ ++L       N I  E+ E+K  F        RRT   E+  A+     + +
Sbjct: 477 SQTIERLRAILADMGLLMNVIVMELEEIKARFGDK-----RRT---EIVPAEAEIQMEDL 528

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V IS+ G+++          +     +  +  +E D +     A T   +   
Sbjct: 529 IQEEDMVVTISHAGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFF 588

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621
           S  GK +      +        G AI   + +   +    I     +D    ++ ++ +G
Sbjct: 589 SDKGKVFVKKVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRG 648

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
                  +E      KG   +++   +++       G   + +   +   + F  DQ+  
Sbjct: 649 QIKKTALNEYENYRDKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP 708

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             R   GV+     +G +   +          +    R Y +        L  RGG G +
Sbjct: 709 TGRATMGVKGIELDEGDVVVGLGVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVI 768

Query: 740 VPKGFPRSGKFLS 752
           +     R+G  + 
Sbjct: 769 LIDASERNGPVVG 781



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 17/204 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A       + E   V ++ RG I+    +         +  +  +EGD L  A
Sbjct: 621 EPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRDKGIIGVRIEEGDQLFTA 680

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTA-FVYDST 611
                   +++ +  G +   P   +   R  G A   +  I+L+    +V      D  
Sbjct: 681 ALTDGKRELVIATRSGMSIRFPEDQV---RPTGRATMGVKGIELDEGDVVVGLGVSGDGR 737

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGEN 667
            ++L V  +G        E    +R GK  + + + E+   VV V      D V +V + 
Sbjct: 738 DRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGPVVGVAMVSPSDEVLIVTDR 797

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQ 690
            +++     +I E  R  +GVR+ 
Sbjct: 798 GQMIRTKTSEIRETGRNAQGVRIM 821


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/800 (29%), Positives = 393/800 (49%), Gaps = 70/800 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + + A  LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ + A+ALI NPEI+ ++L++ I GPDFPTG  I+  R  I E+Y  GRG 
Sbjct: 182 NIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I+VTE+PYQ  K+ LIE+IA+L+  K+I  + DIRDES
Sbjct: 241 ITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R     +++ +++  + +++ F  N+  L  G  P+V+ +   L  + 
Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNG-TPEVLTIKKFLTVFW 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V  FS
Sbjct: 360 EFRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFS 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I +E D L  +      +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I +       RRT   +    D   +   +I  +   ++++ +G+I+ + + +     
Sbjct: 480 KAIHATP-----RRTVIVQ---EDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQN 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D ++  L     D++L  S  G  Y+L A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +D     ++++ +G       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D V +  +    + F    D++  + R  +GV+    + G    +I   I
Sbjct: 652 LRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSG--DALISMDI 709

Query: 706 CEGLTW---------------------------------IDSAGRSYNRSENDLLGWLGK 732
                                                  +    + + +        L  
Sbjct: 710 LPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQH 769

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           R G+G    +   +  + ++
Sbjct: 770 RAGLGVKAIRFKSKDDQLVA 789



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 91/261 (34%), Gaps = 48/261 (18%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSH 536
           +   +   +  T  G        + + +K T   ++ E +  T  ++++ +G+I+     
Sbjct: 572 LNAYQIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALS 631

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +        L A+   EGD L+    A   D +++ S  G A    A      R  G A 
Sbjct: 632 AFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQ-DELRALGRAT 690

Query: 591 QLLIDL----------------------------NHNQDI---VTAFVYDSTCK---LLV 616
           + +  +                              ++D+     A + +S      LL 
Sbjct: 691 RGVKSMRLRSGDALISMDILPSQVVANIAVGSEDEPDEDLGGDTDAILEESDNPGPWLLG 750

Query: 617 VSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLI 672
           V+ KG    V   +     R G     ++  S++   + + V    D + +V     ++ 
Sbjct: 751 VTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVALHVVNADDELMIVTNRGIIIR 810

Query: 673 FSIDQIPEMSR-GKGVRLQSY 692
            S++ I   SR   GVR+Q  
Sbjct: 811 QSVNDISPQSRSATGVRVQRL 831


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/785 (29%), Positives = 388/785 (49%), Gaps = 50/785 (6%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD +  S     + +  + L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM 
Sbjct: 59  VDPLDESEV---DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMF 115

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +F K A++VGEV+G  HPHGD ++YD++VRL QP+  RYPLI GQGNFG+  
Sbjct: 116 DGGYRPDRSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAG 175

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE +M  +A  +++ +++D VD +  Y+    EP V P++FPNLL NG++G
Sbjct: 176 DDGAAAPRYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAG 235

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN++E+ +A   L+ N E +  +LLE     I GPDFP+G  IV     
Sbjct: 236 IAVGMATNIPPHNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIV-GTSG 294

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++YR GRG    RA    EE+  G   +VVTE+PYQV    L  KIAE++   +I  +
Sbjct: 295 IEDAYRTGRGSITQRAVVSTEEI-NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGI 353

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            DI DE S    + ++    R     +++ +++  + ++  F  NM  L+ G VP+ + +
Sbjct: 354 ADITDETSGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANG-VPRTLSI 412

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414
           D  ++EW  H+ +V+ RR+ FR++  + ++ I +G L A   +DE+IA+IR     D+ +
Sbjct: 413 DSFVREWTKHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEAR 472

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++    + E Q +AIL ++LR L  LE  +I  E D L A  E+  ++L   ++Q + 
Sbjct: 473 TGLMDLLEIDEIQANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDI 532

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           ++ E+ E+ + F        RRT   E+         + +I +E + V I+  G+++   
Sbjct: 533 VSEELAEIVDRFGD-----DRRT---EILPFAGDMEMEDLIPEEDMVVTITRGGYVKRTR 584

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-- 584
                  K     +     +E D ++      T   +L  +  G+ Y      L      
Sbjct: 585 EDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAKGYELPEAPRD 644

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ +  L+    +++I +      Y+    L++ +  G           ++   G   
Sbjct: 645 AKGQHVANLMAFQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIA 704

Query: 642 LKVSS--------EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRL 689
           + +           +++     V   D + +V  N + + F  D   +    R   GV  
Sbjct: 705 INLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGTLRPTGRATSGVTG 764

Query: 690 QSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++      ++   +    +  I      + +        L  RGG+G  V K     G
Sbjct: 765 MKFR--HQDTLLAMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRG 822

Query: 749 KFLSS 753
             + +
Sbjct: 823 HLVGA 827



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 24/224 (10%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKE------- 547
           +      + L     E     V+ +  G ++     + D S      A++ ++       
Sbjct: 657 QPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGP 716

Query: 548 -GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIV 603
             D +  A   ++ D ILL+S +G++   PA +     +GR    +    +   H   ++
Sbjct: 717 QPDRVISARAVNSDDEILLVSRNGQSVRFPADDGTLRPTGRA--TSGVTGMKFRHQDTLL 774

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEK--MKLVVKVTGD 659
              V      ++ V+  G A      E     R G      K+  +    +   V    D
Sbjct: 775 AMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRGHLVGAAVVEETD 834

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            + VV E  +++   + ++P   R   GV       G    ++ 
Sbjct: 835 ELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRILLVT 878



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              +    IA  +R++          G +          +       +          ++
Sbjct: 695 DSSRTGGIIAINLRDI------DGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPAD 748

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGR 584
            G +R     +  ++ + F+  D+L           ++ ++  G  K  T+    L    
Sbjct: 749 DGTLRPTGRATSGVTGMKFRHQDTLLAMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRG 808

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFL 642
           G G  +  L D      +V A V + T +LLVV  +G     + +E+ A  R   G  F 
Sbjct: 809 GLGIRVAKLPDDRG--HLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFA 866

Query: 643 KVSSEEKMKLV 653
           K    +++ LV
Sbjct: 867 KPDKGDRILLV 877


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/766 (33%), Positives = 419/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLHLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       RRT   E+  + +    + +I  EP+ V +S +G+++ +   + +   
Sbjct: 478 KEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              K        E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    VV     H+ +       + F ++++ E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P   +         +  +    ++  +    + D   KL
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISDDGNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           ++  SI  I E  R   GV+L +  D  +    C K  E      S+ ++ 
Sbjct: 775 MIRVSIKDIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQNL 825


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/783 (30%), Positives = 395/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 28  DNTDYGLMVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDG 87

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 88  GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDD 147

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 148 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 207

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+P+ S E+LLE     I GPDFPTG  I+   + I 
Sbjct: 208 VGMATNIPPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIE 266

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D
Sbjct: 267 QAYRTGRGLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIAD 325

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 326 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     
Sbjct: 385 FIRHWVGHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTG 444

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   + 
Sbjct: 445 LMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVG 504

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 505 DELDEIVSKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRTKAD 556

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 557 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 616

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G   ++
Sbjct: 617 GQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 676

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + +       +++         D + +V +    L F  +   +  M R   GV+   ++
Sbjct: 677 LMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFR 736

Query: 694 DGGI---SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G      DV+     + L  + + G  + +        L  R G G    +     G  
Sbjct: 737 EGDELLAMDVVWGDSDKDLFVVTNEG--FAKRTAISEYRLQGRNGFGVKAVQLAEGRGSL 794

Query: 751 LSS 753
           + +
Sbjct: 795 VGA 797



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 24/207 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTALAEYDSPRQGGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +      +++   V   DS   L VV+++G A  
Sbjct: 708 GMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLAMDVVWGDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V   E     +  V+    D +  + ++ K++  ++D++   
Sbjct: 767 TAISEYRLQGRNGFGVKAVQLAEGRGSLVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICE 707
            R   GV     K     ++I     E
Sbjct: 827 GRTTQGVTF--AKPDKNDEIISIARNE 851


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/755 (34%), Positives = 424/755 (56%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN  T+ ++ V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSNEVTINQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN    + +LLE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        +++T +P+Q    +++E+IA  +  K++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYTEEN-----GEVIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR+ + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ D+PK  +++RF 
Sbjct: 356 EWLVFRRDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEPKQELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++ +   L S ++    I  E+   
Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERDALQLTLGSDRRMKTLIKKELMAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  ++ ++  EP+TVVIS +GW R  K H VD   
Sbjct: 476 AEKY------GDDRRSPIVQRGESKALSEKELVPSEPVTVVISAKGWARCAKGHDVDAPN 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K  DS   +    +    +   + G+ ++  A  L S R  GE +    ++   +  
Sbjct: 530 LSYKGDDSYLASAKGRSNQPAVFFDSSGRTFSCDAHTLPSARSQGEPLTGRFNMVSGEQF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + + + K L+ S  G  F+   +++++  + GK +L + S  K+   V V     D
Sbjct: 590 EHVIMANESQKFLMASDAGYGFVGSFADMLSKNKAGKAYLSLPSAAKVLTPVLVNDIETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG----ISDVICFKICEG--LTWID 713
               +    ++L+F +  +P + +GKG ++ +            ++   I        I 
Sbjct: 650 RCLAISNEGRMLLFPLRDLPSLGKGKGNKIINIPSAKAKTREEFIVALAIVPNGCDVKIL 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R      +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRGMTLKASDLEHYYGERGRRGNKLPRGLQRVD 744


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 397/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+TQ A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EAAL ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTRIEMDAGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 386/743 (51%), Gaps = 34/743 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D   A++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A ID+PEI +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAI-DHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+ E  +++L    +    +  E+ ++K+ F        RR
Sbjct: 437 GRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDE-----RR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E     ++  G+I+          +     +S +  KE 
Sbjct: 492 T---EIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEE 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T D +L ++  G+ + +    +   S    G  I  L+ L   + +    
Sbjct: 549 DIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMI 608

Query: 607 VYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                       + +V+ +G        +     + G   + ++  + +      +G D 
Sbjct: 609 CQSKDAEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDM 668

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V   N + + F+ +    M R G GVR     +G   +V+   IC EG T +      
Sbjct: 669 LIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTENG 726

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
             R  +     +  RGG G    
Sbjct: 727 KGRRSDIDTYRITARGGKGIRNY 749



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R +  +   + A+   EGD +           +L ++ +GK               G+ I
Sbjct: 687 RPMGRNGHGVRAIRLAEGDEVVGVCICREGGTVLTVTENGKGRRSDIDTYRITARGGKGI 746

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +   D++ +  +    + D    +L+ S +G    +  +EI   +R   G   +++   +
Sbjct: 747 RNY-DVSRD-KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGEND 804

Query: 649 KMKLVVKVTGDHVA 662
           K+ ++ +   D  A
Sbjct: 805 KVMVLARTDHDDEA 818


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/804 (30%), Positives = 403/804 (50%), Gaps = 73/804 (9%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           ++    +V  V +   ++  ++ YA+S I  RA+PD+RDG KP  RRI+ AM E+GL   
Sbjct: 17  DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               K A+IVGE +G  HPHGDQ++Y +LV +AQP+  R  LI GQGNFG+I+GD  AA 
Sbjct: 77  RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++    L++  +D+D VDF   Y+E   EP VFP+ FPNL+ NG +GIAVGMAT
Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E  +  +ALID+P +S E+LLEYI GPDFPTGG+I+  RE IV  +  GRG 
Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVIL-GREGIVNYFTTGRGS 255

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VR    VEE+  G   IV+ EIPY V ++ L+EKI EL+  K I  + DIRDES E+ 
Sbjct: 256 LKVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDENT 315

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K R     ++  +++  + ++T F +NM  +     P+ + L  +L  +L HR 
Sbjct: 316 RVVIELK-RDAVAKVVANNLYRHTPLQTTFAVNMVAI-DRLRPKSLNLKELLSCYLDHRH 373

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR------ 420
           EV+ RR+ F +     R E+L+G LIA   + E I IIR     D+ +  ++ R      
Sbjct: 374 EVVTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEW 433

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + L+  QV+AIL+LRL  L  LE  +I  E   LL + ++  
Sbjct: 434 IESLGIPLDGQRMTEGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFR 493

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S ++ W  +  E+ E+KE +              ++   +     + ++  + + +
Sbjct: 494 LILASEEKIWAIVKAELLEIKEKYGNPRK--------TKIIPDEGEVAFEDLVANQRVVI 545

Query: 523 VISNRGWIRS--------LKSHSVDLSALHF------KEGDSLKIALHAHTTDRILLLST 568
            +++ G+I+          +     +  +        +E D ++   +A T D +L  +T
Sbjct: 546 TLTHNGFIKRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTT 605

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF--------------VYDSTC 612
           DG+ Y      +        G+ I  +++L   ++I +                 +D   
Sbjct: 606 DGRVYIQRVYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEG 665

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            +   + KG       SE     + G T + +   +K+   +   G   + ++ +  + +
Sbjct: 666 YIFFCTLKGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSI 725

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-LTWIDSAGRSYNRSENDLLGW 729
            FS   +  M R   GV     + G   +V+   I +   T +  + +   +  +     
Sbjct: 726 RFSESDVRPMGRNAAGVIGIDLQPG--DEVVGMSIVDHRATLLVVSEKGMGKRTSFEEYR 783

Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753
             KRGG G +  K   ++GK + +
Sbjct: 784 KQKRGGQGVITMKTSDKTGKVVKA 807



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
           +++  +KE      + +G ++              ++A+  +E D L   L       I+
Sbjct: 657 RESSWDKEGYIFFCTLKGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIV 716

Query: 565 LLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L++ +G++      ++   GR     I   IDL    ++V   + D    LLVVS KG  
Sbjct: 717 LITKEGQSIRFSESDVRPMGRNAAGVIG--IDLQPGDEVVGMSIVDHRATLLVVSEKGMG 774

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
                 E     R G+  + + + +K    +K +  +  D + V+     ++   +  + 
Sbjct: 775 KRTSFEEYRKQKRGGQGVITMKTSDKTGKVVKAITVLDDDELLVLTLKGNVIRIHVKDLR 834

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  R  +GVRL           I   I +
Sbjct: 835 KTGRNTQGVRLVQLDSEDKVTSIARIIPD 863


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/779 (33%), Positives = 401/779 (51%), Gaps = 61/779 (7%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G DN       + + +  +++   ++  YL YA+S I  RAIPD RDG KPVHRRI++ M
Sbjct: 18  GADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTM 77

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++K A  VG+V+G+ HPHGDQ+VYDSLVRLAQ +  R PLI GQGNFG++
Sbjct: 78  HENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSV 137

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AAYRYTEARM +VA+ +L  +D+D V+F D Y+ E  EPVV P+++PNLL NG  
Sbjct: 138 DGDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAG 197

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++P HN+ E+ +  LAL++NP ++  +LL+YI GPDFPTGG+I+  R     
Sbjct: 198 GIAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLIL-GRTGARN 256

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +   GRG   +R+R  +EEV +    I+V EIPYQV K+ +IEKIA+L+  K+I  + D+
Sbjct: 257 AVLTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADL 316

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   V+    R  + D+++  +F  S M+T F  NM  L  G  PQ++    IL
Sbjct: 317 RDESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLV-GGRPQLLGALDIL 375

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           KE+L  R EV+ RR+ F +     R  ++ GL +A  NIDE+IA+IR   N    +  ++
Sbjct: 376 KEFLRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLM 435

Query: 419 SRFS--------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           +R                            LTE Q  AIL LRL  L  L   ++ +E  
Sbjct: 436 ARDWPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAK 495

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  +   +  LL S ++  + I  E+ EV+E ++       RR+ F +    +     +
Sbjct: 496 TLADQIADLLDLLRSRQRVLDIIRDELTEVRENYATP-----RRSEFVDA---ELDFEDE 547

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I ++ + V +++ G+         R+ +      S +  K+ D +     A T   +L
Sbjct: 548 DLIPRDEMVVTVTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLL 607

Query: 565 LLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S  G  Y      L  G  +  G+A+  L+ L   + I +               ++ 
Sbjct: 608 FFSNRGMVYKTKTWRLPLGAPNTRGKALINLLPLEQGETITSIMALPEDESTWADMNVMF 667

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKLLIFS 674
            ++KG     + S+ +   R GK  +K+  E+   + +V+    D V +     + + F 
Sbjct: 668 ATNKGTVRRNKLSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFP 727

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
              +     R   GVR     +G   ++I   I   +       R+Y +    +   LG
Sbjct: 728 ATDVRVFAGRNSVGVRGIRLAEG--DELISMAILHHIDVTSPEARAYMKHATAMRRALG 784



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 78/241 (32%), Gaps = 24/241 (9%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------L 533
           +   S    + R      ++   D   +   +  ++    + +++G  IR          
Sbjct: 676 RNKLSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFA 735

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +SV +  +   EGD L           I + S + +AY   A  +    G  E I+ +
Sbjct: 736 GRNSVGVRGIRLAEGDELISMAI---LHHIDVTSPEARAYMKHATAMRRALGDDEEIETV 792

Query: 594 IDLNHNQDIVT--------AFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLK 643
                              A +  +   LL V+S G        +   +     G     
Sbjct: 793 NTDGDEDGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATD 852

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +  +  +     V   D +  V +  +L+ F +D +   SR  +GVRL    +G     +
Sbjct: 853 IKRDIPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAV 912

Query: 702 C 702
            
Sbjct: 913 V 913


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/779 (29%), Positives = 382/779 (49%), Gaps = 54/779 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   ++  +L YA+S I ERA+PD+RDG KPVHRR+I+ M + G      + K 
Sbjct: 37  RVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRGWNKC 96

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVRLAQP+  RYPL+SGQGNFG+   D AAA RYTE R
Sbjct: 97  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRYTECR 156

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+  VDF+  Y+  D+EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 157 MAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNIPPHN 216

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ EA    +++PE S E+LLE     + GPDFP G +IV  R+ I ++YR GRG   
Sbjct: 217 LREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIV-GRKGIEDAYRTGRGSVT 275

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   +EE  +G   +VVTE+PY      L +KIA+L+ + R+  + DIRD+ SA   +
Sbjct: 276 MRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSARTGQ 335

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     R   P ++M +++  + ++  F  NM  L    VP+ + LD  ++ W+ H+ E
Sbjct: 336 RLAIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDN-VPRTLRLDQFIRYWVLHQIE 394

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+  ++Q  ++   I +GL+ A   +DE+IA+IR     +        L    + Q
Sbjct: 395 VIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQASAGLQKLLDIDDVQ 454

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AILN++LR L  LE  +I  ++  L      +  +L + ++Q + ++ E+ E+   + 
Sbjct: 455 AAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDILANRERQRSIVSNELGEIVGKYG 514

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT       A+     +  I  + + V I+  G+         R  +     
Sbjct: 515 DE-----RRTQII---AAEGDFSDEDFIPDDDMVVTITRGGYAKRTRTDQYRPQRRGGKG 566

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     +  D ++          IL  +  G+ Y +    L  G     G  +  L+   
Sbjct: 567 VRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQLPEGGRDAKGGHVAGLLSFL 626

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV 653
            ++ I        Y+    L++ + +G       S   +  + G   +     ++++   
Sbjct: 627 PDEKIAQVLALRSYEDAEYLVLATKQGLVKKTALSAYDSPRQAGLIAVNFRADDDELIGA 686

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI---- 705
             V   D V ++    + + F  D   +  M R   GV    +++G   +++   +    
Sbjct: 687 ELVDASDDVLLISRLGQAIRFRADDEQMRPMGRTTSGVTGMRFREG--DELLSMSVVPAE 744

Query: 706 ------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        E L         + +        +  RGG+G    +     G  + 
Sbjct: 745 RGEASDEHADEEDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLVG 803



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 30/220 (13%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVD------LSALHFK-EGDSLKIALHAHTTDRILLLS 567
            E     V+ + +G ++     + D      L A++F+ + D L  A     +D +LL+S
Sbjct: 640 YEDAEYLVLATKQGLVKKTALSAYDSPRQAGLIAVNFRADDDELIGAELVDASDDVLLIS 699

Query: 568 TDGKAYTLPAGN---LLSGR------------GHGEAIQLLIDLNHNQ-DIVTAFVYDST 611
             G+A    A +      GR            G       ++     +     A   D  
Sbjct: 700 RLGQAIRFRADDEQMRPMGRTTSGVTGMRFREGDELLSMSVVPAERGEASDEHADEEDEP 759

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGEN 667
             +  V++ G A      +     R G     +  +++    +  +V    D V  +  +
Sbjct: 760 LYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLVGGLVVTDSDEVIAIKAS 819

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            ++   S+ ++    R   GV+    +  G  +VI   + 
Sbjct: 820 GQVTRSSVAEVNPTGRDTMGVKFVGVR--GKDEVIAIALN 857


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 384/743 (51%), Gaps = 34/743 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KSA  VG
Sbjct: 23  DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVG 82

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 83  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 142

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +++D +D+   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 143 VEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 202

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A ID+P+I +  L+EYI GPDFPT GII+  R  I  +Y  GRG   +R R  +EE
Sbjct: 203 DGCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEE 261

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +A+L+  KRI  +  + DE+      ++    +  
Sbjct: 262 TKNGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDA 321

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+V+ L  +L++++  + EV+ RR+ + +
Sbjct: 322 NAQVILNQLYQYTQLQDTVGVIMLAI-DHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDL 380

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 381 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 440

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL +L A+ E  +++L    +    +  E+ E+K+ F        RR
Sbjct: 441 GRLAGLEILKIEEELASLQAKIENWEAILADDARVLAIVKEELLEMKKRFGDE-----RR 495

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E     ++  G+I+          +     +S +  KE 
Sbjct: 496 T---EIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEE 552

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T D +L ++  G+ + +    +   S    G  I  L+ L   + +    
Sbjct: 553 DIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNMI 612

Query: 607 VYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                       + +V+ +G        +     + G   + ++  + +      +G D 
Sbjct: 613 CQSKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDM 672

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V   N + + F+      M R G GVR     +G   +V+   IC EG T +      
Sbjct: 673 LIVATRNGQAIRFNEADARPMGRSGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTENG 730

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
             R  +     +  RGG G    
Sbjct: 731 KGRRSDIDTYRITARGGKGIRNY 753



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 10/211 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTT 560
                +    +     +++ +G I+              L  +   EGD+L         
Sbjct: 611 MICQSKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 670

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A      +       G  ++  I L    ++V   +      +L V+  
Sbjct: 671 DMLIVATRNGQAIRFNEADARPMGRSGHGVRA-IRLAEGDEVVGVCICREGGTVLTVTEN 729

Query: 621 GNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQI 678
           G     +        R GK       +++K+  V +    D V +  +   ++    ++I
Sbjct: 730 GKGRRSDIDTYRITARGGKGIRNYDAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEI 789

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           P  SR G GVR+    +     V+     + 
Sbjct: 790 PLQSRYGSGVRVMRLGENDKVMVLARTDHDD 820



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 4/134 (2%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R +      + A+   EGD +           +L ++ +GK               G+ I
Sbjct: 691 RPMGRSGHGVRAIRLAEGDEVVGVCICREGGTVLTVTENGKGRRSDIDTYRITARGGKGI 750

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE 648
           +          +    + D    +L+ S +G    +  +EI   +R   G   +++   +
Sbjct: 751 RNY--DAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGEND 808

Query: 649 KMKLVVKVTGDHVA 662
           K+ ++ +   D  A
Sbjct: 809 KVMVLARTDHDDEA 822


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/753 (36%), Positives = 450/753 (59%), Gaps = 23/753 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T  E+  + ++L+   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   
Sbjct: 4   QTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGLKAS 63

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 64  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAA 123

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ + AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 124 MRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAVGMA 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  HN++E+ +A + L+DNP   ++++ E + GPD PT   I+ SR  + + Y  GRG
Sbjct: 184 TDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYETGRG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA +  E+       I++T +P+QV  ++++E+IA  +  K++P++ D+RDES  +
Sbjct: 244 SVRMRAVYTKEQ-----GEIIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDESDHE 298

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + LM  +F  +D+E  + +NMN++ +   PQV  L  IL EWL+
Sbjct: 299 NPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILVEWLS 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E++ +R + R+  +  R+ IL+GL++AYLNIDE+IAIIR+E+ PK  ++ RF LTE 
Sbjct: 359 WRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDPKAELIKRFGLTEI 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL+L+LR L KLEE++I+SE + L  E++K++ +L S  +    I  EI++  E +
Sbjct: 419 QADAILDLKLRHLAKLEEFKIQSEQNELEEERKKLEGILGSDAKMRKLIKKEIQDAAEEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E     +A  ++ ++  +P+TVVIS +GWIR+ K H +D   L++K
Sbjct: 479 GD-----DRRSPIVEREE-AQAFSEKDLLSSDPVTVVISKQGWIRAAKGHEIDAVGLNYK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+ K+A    T    +LL T G+++T+   NL S RG GE +   I L     I  A 
Sbjct: 533 SGDAFKLACKGRTNQPTILLDTTGRSFTIETHNLPSARGQGEPVTGRITLPKGSTIDAAV 592

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAV 663
                 K+L+ S  G  F+ + S++ + T+ GK  L +     +   +KV     D +A 
Sbjct: 593 AGKDADKILMASDAGYGFVAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAA 652

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKI--CEGLTWIDSAGR 717
           V    +LL+F + ++PE++RGKG ++ +      +     V+       +    + +  +
Sbjct: 653 VTNEGRLLVFPVSELPELARGKGNKIINIPSARAAAREELVVALATLSKDDTLMVHAGKQ 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 +D+  + G+RG  G+ +P+G+ R    
Sbjct: 713 HLRLKPSDIEHYRGERGRRGNKLPRGYQRVDSL 745


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/766 (33%), Positives = 417/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQNNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L  +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLCLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       RRT   E+  + +    + +I  EP+ V +S +G+++ +   + +   
Sbjct: 478 KEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQN 529

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              K        E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    VV     H+ +       + F ++ + E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 13/206 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P  ++         +  +    ++  +    + D   KL
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDDGNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKD 694
           ++  SI  I E  R   GV+L +  D
Sbjct: 775 MIRVSIKDIRETGRNASGVKLINTAD 800


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/767 (32%), Positives = 414/767 (53%), Gaps = 35/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  +++  +++  YL Y++S I  RA+PD +DG KPVHRRI+ AM ++ +  
Sbjct: 2   ENLFENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG++DGDSAAA
Sbjct: 62  RAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E  G+    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  D
Sbjct: 241 RVRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    +++M +++  + MET F + + +    + P+V  L  +L  +++HR
Sbjct: 300 GIRVVIELKKDAMSEIVMNNLYKSTPMETTFGI-ILLAVYNKEPKVFTLPELLNVFISHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELRFGLSP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I  E+ E++E 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKEELSEIREK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           +S             ++  +      + +I  EP+ V I++ G+++          +   
Sbjct: 479 YS--------SKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKSYEKQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++     +T D ++ ++  G+ Y L    +   S    G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L   +  G       SE       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---DGGISDVICFKIC 706
               T    ++ +     + + F +++  E  R  +GVR   +K   D  +   +   I 
Sbjct: 651 AKITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVDANVVDNIE 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + L  +    +   +           R G G +  K   ++G  + +
Sbjct: 711 QELLTVSQ--KGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGA 755



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 15/229 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA- 554
                   +  +  ++       +  G ++              + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCK 613
           +   +T  +++ ++ G+                  ++ +   +    +V A V D+   +
Sbjct: 653 ITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVDANVVDNIEQE 712

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRK 669
           LL VS KG        E     R G   + +         +  V+      + ++    K
Sbjct: 713 LLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGK 772

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSA 715
           ++   +  I +  R   GV + +   KD  +S   C K  +    I++A
Sbjct: 773 MIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKEDDDELDIENA 821


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/813 (32%), Positives = 422/813 (51%), Gaps = 77/813 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     ++++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+ +G
Sbjct: 1   MEENLLNQNQDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD 
Sbjct: 61  VGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT + E IL+ +++D VDF   Y++ ++EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+ +  L +++N   ++E+++EYI GPDFPTGGII   ++ I+E+YR 
Sbjct: 181 GMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIF-GKKGIIEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E+       IVV E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ ++F  + ME+ F + M  ++    P+V  L  +LK +L
Sbjct: 299 DKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKE-PKVFNLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +I+N       +  +V++F 
Sbjct: 358 NHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S       I  E+ E+
Sbjct: 418 LSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F              E+         + +I  E + V I++RG+I+          K
Sbjct: 478 KNKFKVP--------RITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  
Sbjct: 530 RGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I        +  +  L   +  G       SE       G   + +   ++
Sbjct: 590 LIQLQPDEKIKAIIPTTDFAQSKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAISLDENDE 649

Query: 650 MKLVVKVTGDH------------------------------------------------V 661
           +   + V G+                                                 +
Sbjct: 650 LVTALIVEGEEEPINLIGELGVETEINEIEAIEAQIDEENSNDGDKNGERTESDDSEKML 709

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSY 719
            +V +    L F + ++ +M R  +GV    +K+ G   V    I       +  + +  
Sbjct: 710 FIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVIENNAQEVLSVSQKGI 769

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        L  RGG G +  K   R+G  + 
Sbjct: 770 GKRTTADEYRLTNRGGKGVICMKLTNRTGDLIG 802



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 68/207 (32%), Gaps = 6/207 (2%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F     +G R  +  E      A + +   E   +   +     I  +++    +   +
Sbjct: 630 EFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQIDEEN 689

Query: 545 FKEGDSLKIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             +GD       +  ++++L + +  G         +         +  +       ++V
Sbjct: 690 SNDGDKNGERTESDDSEKMLFIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVV 749

Query: 604 -TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTG 658
             A + ++  ++L VS KG        E     R GK  + +       + + +V+    
Sbjct: 750 GAAVIENNAQEVLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLTNRTGDLIGVVMVDEE 809

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK 685
             +  +  + K++   +  I +  R  
Sbjct: 810 QDLMALTSSGKMIRVDMQSIRKAGRNT 836


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 248/840 (29%), Positives = 411/840 (48%), Gaps = 103/840 (12%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN +   +E + AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR++ AM E+  
Sbjct: 4   SNDHQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ +   A L L+  PE  I +L++ I  PDFPTG   +     +   Y+ G
Sbjct: 183 MATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGA-TIYGLTGVRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           RG   +RA+  +E +G+      I+V EIPYQV K++L+EKI EL+  K I  + ++RDE
Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   ++    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+
Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEF 360

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------ 412
           L HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+                
Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRA 420

Query: 413 -------------------PKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEY 445
                               +P  +          + L++ Q  AIL + LR+L  L++ 
Sbjct: 421 WQSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 480

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I  E   L+A    +  +L   ++    I  E+ E+K  F      G  R +       
Sbjct: 481 EIVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQF------GDERRSEINAFG- 533

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I    + V +++ G+I++         +       A   K+ D ++    A
Sbjct: 534 GGDIADEDLIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIA 593

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612
           +T D ++  +  G+ + +    L  G     G  I  +I L+ N+ +        +    
Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFPENE 653

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            +   ++ G    V+ S     + KG   + +   + +   VK +G D + +     K L
Sbjct: 654 YVFFATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKAL 713

Query: 672 IFSI-------------DQI-PEM-------------SRGKGVR----------LQSYKD 694
            F+               ++  EM               G GVR               +
Sbjct: 714 RFNEYWAGKADAADEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSGGLRGMRLPE 773

Query: 695 -GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            G I  ++  +   GL  + +    Y +           +GG G++      R+G  +++
Sbjct: 774 NGRIVSLLVAQKNCGLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAINTGERNGDLVAA 833



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 48/246 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSL 551
              + +    A L      +       +  G ++ +         S  + A+  KEGDSL
Sbjct: 632 IQLDENEKVSAILPVREFPENEYVFFATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSL 691

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTL---------------------PAGNLLSGRG 585
             A+     D I+L S  GKA     Y                        A N  +   
Sbjct: 692 IGAVKTSGADDIMLFSNLGKALRFNEYWAGKADAADEDDSELEAEMQPENDADNETAAPK 751

Query: 586 HGEAIQ---------LLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIAN 634
            G  ++           + L  N  IV+  V    C  ++L  ++ G        +    
Sbjct: 752 SGNGVRPSGRGSGGLRGMRLPENGRIVSLLVAQKNCGLQVLTATANGYGKRTPIDDYPRK 811

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            + G+  + +++ E+   +V  T     D + ++     L+   ++Q+ E  R   GV+L
Sbjct: 812 GKGGQGNIAINTGERNGDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKL 871

Query: 690 QSYKDG 695
            +  +G
Sbjct: 872 INLDEG 877


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 230/745 (30%), Positives = 383/745 (51%), Gaps = 28/745 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   +L YA+S I  RA+PD+RDG KPV RRI++ MSE+G+     +KKSARIVGEV+GK
Sbjct: 2   MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEARM+++A  +L+
Sbjct: 62  FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ +D++  Y++ ++EPVV P++ PNLL NG +GIAVGM T+IP HN+ E+      
Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+ NP+ + + L++ I GPDFPTG  I+  R  I  +Y  G+G   VRA   +E    G 
Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTG-GIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGR 240

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPY V K+ L++KIA+L   K I  +  +RDES +    +     R     ++
Sbjct: 241 ERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVV 300

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + ++F  + M+  F +NM  +  G     + L  +L+ +L H+++V+ RR+ F +   + 
Sbjct: 301 LNNLFKQTQMQANFGMNMVAIVDGAPH-YLTLKQMLQYYLDHQKDVVTRRTKFELAKAEA 359

Query: 386 RVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  NIDEI+ II    + D  K  ++SRF L + Q  AIL++RL  L  L
Sbjct: 360 RAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLDDKQSQAILDMRLVRLTGL 419

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  ++++E   L A+      +L   ++    I  E+ ++++ F      G +R T    
Sbjct: 420 ERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQKRF------GDKRRTEIGA 473

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           S    +   + +IEK+ I + +++ G+I+                +  +  ++GD ++  
Sbjct: 474 SEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHL 532

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609
           +++ T D +L  +  GK Y+  A  +        G  +  L+ L   + + T        
Sbjct: 533 IYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA 592

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-R 668
               L  ++  G       SE       G   L +   +++  V+   G    ++G +  
Sbjct: 593 DDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLG 652

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
             + F+ + +  M R   GVR  + +D     V    +      +  + + Y +      
Sbjct: 653 YAVTFNENDVRAMGRTAAGVRGINLRDHDYV-VGSGVLDADDQVLVISEKGYGKHTPAAE 711

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  RGG G        ++G    
Sbjct: 712 YSVKGRGGKGIKTANITEKNGPLAG 736



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     I+  G ++              L AL  ++GD L   
Sbjct: 577 EKGEKVQTVINVPEGADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDELSNV 636

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T    ++ +       ++  I+L  +  +V + V D+  ++
Sbjct: 637 LTTDGKQNILIGTHLGYAVTFNENDVRAMGRTAAGVRG-INLRDHDYVVGSGVLDADDQV 695

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       +E     R GK      +   +     ++V   G  + V+  +  +
Sbjct: 696 LVISEKGYGKHTPAAEYSVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGIM 755

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F    + +  R   GVRL    D      +     E
Sbjct: 756 IRFKTKDVSQTGRSTMGVRLIKVNDDSQVASLTIVPSE 793


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 250/797 (31%), Positives = 396/797 (49%), Gaps = 70/797 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S    +E + A  LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MTFSQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE+R+  +  + +LQ ++++ VDF D ++    EP+V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+    +ALI NPEIS E+L++YI GPDFPTG  I+     I E+Y 
Sbjct: 181 VGMATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQIL-GTTGIREAYT 239

Query: 245 LGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GRG   +R    +E + +        I++TE+PYQ  K+ LIEKIAE++  KR+  + D
Sbjct: 240 TGRGSITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   
Sbjct: 300 IRDESDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGE-PQLLTLKEF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L E+L  R +V+ RR+ +  +  + R  +L+GLLIA  N+D +IA+IR+       K  +
Sbjct: 359 LHEFLKFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQEL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  + L+E Q DAIL ++LR L  LE  +I+ E ++L+A+      +L+  ++  + I  
Sbjct: 419 IDSYGLSEPQADAILQMQLRRLTALEAEKIQREHEDLVAQIADFQDILDRPERILSIIQT 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ ++K  F+        R T  E  + +       +I  +   ++++ +G+I+      
Sbjct: 479 EVEQLKTRFASP------RRTVIE--QLEGEIDTTDLIANQKAVILVTEQGYIKRMPVDT 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
                           KE D+++        D IL  S  G AY L A  +   S    G
Sbjct: 531 FEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLKAYQIPIGSRNARG 590

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ +   + I +    D       L+++++ G       S        G   + +
Sbjct: 591 VPIVQLLPIPREEKITSVVPVDEFREDEYLVMLTAGGYIKKTALSAFSNIRANGLIAIAL 650

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGG---- 696
            + ++++ V +   GD + +       + F  D  Q+  + R  +GVR  + + G     
Sbjct: 651 ETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLGRATRGVRAMALRAGDELIG 710

Query: 697 -------------------------------ISDVICFKICEGLTWIDSAGRSYNRSEND 725
                                          + ++       G   +      + +    
Sbjct: 711 MDILPSAIVANLAVATSDAEVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPV 770

Query: 726 LLGWLGKRGGVGSLVPK 742
               L  R G G    K
Sbjct: 771 SQFRLQNRAGKGITATK 787



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 28/196 (14%)

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP---AGNLL 581
           ++   +R L   +  + A+  + GD L                       LP     NL 
Sbjct: 682 TDHEQLRPLGRATRGVRAMALRAGDELIGMDI------------------LPSAIVANLA 723

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                 E            + +     +    +LVV++ G    V  S+     R GK  
Sbjct: 724 VATSDAEVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGI 783

Query: 642 LKVS-----SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                    +++++  +  V G D + +V     ++  S+  I   SR   GVRLQ   +
Sbjct: 784 TATKFKTRQTQDQLAALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDE 843

Query: 695 GGISDVICFKICEGLT 710
                 +       LT
Sbjct: 844 EDSIAAVTIVPSTELT 859


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 403/762 (52%), Gaps = 32/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +   ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 6   NEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  +  +++ +D++ V+    Y+E   EP VFP+KFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L ++ NP +SI++++  +  PDFPTGGII   R  I E++  GRG   +R
Sbjct: 186 HNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYR-GIKEAFHTGRGRLLLR 244

Query: 254 ARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A   VE  E       ++V EIPY V KSRLIE+IA+LI +K I  + D+RDES +D   
Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L    R    ++++  +F  SD++  F  NM  L    +P+VM +  ++  W+ HR EV
Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLAL-DKGLPKVMNVKQLIAAWVDHRIEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + RR+ F +   + R  IL+G L A  ++DE++ +I    N ++ +  ++ RF LTE Q 
Sbjct: 364 VRRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +A+L+L+L  L  LE  +I  E   LL + + + ++L S     + I  E+ E+++    
Sbjct: 424 NAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQKN--- 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 R     ++  A+     + +I  E + + IS   +I+          +     +
Sbjct: 481 -----HRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGI 535

Query: 541 SALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DL 596
           + +H K E D++K    A T D +L+ +  G+ Y L    +     +  G+ +  L+ D+
Sbjct: 536 AGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDI 595

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I T      ++    +L+ + KG     E SE     RKG   L +   +++   
Sbjct: 596 RPDEKIATVLRVSNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTA 655

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             V+    + +   +   + F   ++  M R  +GV+  + KD     V C  +    T 
Sbjct: 656 RLVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +  N        RGGVG        R+G  + +
Sbjct: 716 LIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERNGNVVGA 757



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 149/438 (34%), Gaps = 29/438 (6%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP--DLLMESIFMLSDMET 337
              ++ I  +    R+    + R+E+ +++        R  +   DL +  +  L   + 
Sbjct: 383 EGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQANAVLDLKLYQLTGLEYEKI 442

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                  +  +  +  V+  + ++++ +     +  +++    +         +  +   
Sbjct: 443 NEEYRELLQKIDYLRAVLASEAMVRDIIR-EELLEIQKNHRSGRKTQIIAAESEVNMEDL 501

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +  + +I  I  +D  K + V  F         I  + L+     EE  IK      +A 
Sbjct: 502 IANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKR----EEDAIKGLY---VAS 554

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT---LQQAM 514
                 +  +  + +     +I E           G+      E  R D+     L+ + 
Sbjct: 555 THDYLLIFTNLGRCYWLKVWQIPETGRK-----SKGKPLINLLEDIRPDEKIATVLRVSN 609

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E++   ++ + +G ++  +           + AL   EGD +  A     + +I+L + 
Sbjct: 610 FEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTY 669

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G A     G +         ++ +   +    +V     + T  +L+V   G       
Sbjct: 670 HGMAVRFDQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNV 729

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +     R G     + + E+   VV        D + ++    + +  ++  +  M R 
Sbjct: 730 EDFRQTNRGGVGVRSIITSERNGNVVGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRN 789

Query: 684 GKGVRLQSYKDGGISDVI 701
            +GV+L + K+G     I
Sbjct: 790 TQGVKLANLKEGDYLVAI 807



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 55/140 (39%), Gaps = 4/140 (2%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++G +R +   +  +  +  K+  D +      + T+ IL++  +G        +     
Sbjct: 677 DQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTN 736

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFL 642
             G  ++ +I    N ++V A        ++++S++G    +   ++  +    +G    
Sbjct: 737 RGGVGVRSIITSERNGNVVGALCVTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLA 796

Query: 643 KVSSEEKMKLVVKVT-GDHV 661
            +   + +  + K+   D V
Sbjct: 797 NLKEGDYLVAIQKLEVSDDV 816


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 251/856 (29%), Positives = 404/856 (47%), Gaps = 116/856 (13%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN          +++ VS+   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +M E
Sbjct: 3   DNDDTGPGAPGSDIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
                   + K ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 63  QNHTPDRPYVKCARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+ + A  +L+ +D D VDF+D Y+ ++ EPVV P++FPNLL NG  GI
Sbjct: 123 DPPAAMRYTESRLARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALIDNPE++IE+L+ Y+ GPDFPTGG  +  R  I  +Y
Sbjct: 183 AVGMATNIPPHNLGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGG-AILGRTGIQSAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG    RA+  VE + +    ++VTEIPYQ+ KS L+EKIA+L+  KR+  + D+RD
Sbjct: 242 LTGRGSVLTRAKVEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   ++    R    ++++  ++  + +++ F  NM  L+ G  P+++ L   L  
Sbjct: 302 ESDRDGMRIVIELKRDAVAEVVLNQLWRYTALQSSFACNMIALN-GGRPEMLTLKDFLTA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------- 410
           ++  R EV+ RR+ + +        +  GL IA  NIDE+I +IR+              
Sbjct: 361 FVDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMAR 420

Query: 411 --------------DKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                           P+ +        L+E Q  AIL LRL+ L  L   +I   L+ L
Sbjct: 421 SWPAHDMAPLVLLIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E      +L+S ++ ++ +  E+  VK   +       RRT   +   +      + +
Sbjct: 481 AVEIADYLEILHSRERLFSIVKEEMLAVKAAHATP-----RRTIILD---SATGVDDEDL 532

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+++          +      SA+  ++ D +     A T   +L  
Sbjct: 533 IQREDMVVTVSHHGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFF 592

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVS 618
           S+ G+ Y      L   + +  G+A+  ++ L   + I T               ++  +
Sbjct: 593 SSAGQVYKEKVWRLPLAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFAT 652

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
           ++G     + S+     R GK  +++   E++  V     D  V +     + + F +  
Sbjct: 653 TRGTVRRNKLSDFAQVNRAGKIAMRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTD 712

Query: 678 IPE------MS-RG---------------------KGVRLQSYK---------------- 693
           +        M  RG                      G R+   K                
Sbjct: 713 VRVFKGRDSMGVRGISLSEGDRVISLAILRHTEADSGERIAYLKMRRAVAGEASAEAGAE 772

Query: 694 -------DGGISDVICFKI---------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
                  + G  D     +          +    +  +   Y +  +     +  RGG G
Sbjct: 773 SPADAQGEDGAEDAGPQSLSPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKG 832

Query: 738 SLVPKGFPRSGKFLSS 753
            +     PR+G  ++S
Sbjct: 833 IVAMVVNPRNGLLVAS 848



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVK--VTGDH 660
           A +      +L +SS G        E     R GK    + V+    + +       GD 
Sbjct: 797 ARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDE 856

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           + +V    +L+   ++ I    RG  GV    +  G    V+  +
Sbjct: 857 IMLVTNGGQLIRCPVEGIRVAGRGTQGV--IVFNTGADEQVVSVE 899


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 267/842 (31%), Positives = 410/842 (48%), Gaps = 109/842 (12%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+    +     VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G  
Sbjct: 4   NTPERPQYGGPTVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNT 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AA
Sbjct: 64  HDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM + A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGM
Sbjct: 124 AMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+C+A LALI+NP++  E L+EYI GPDFPTGGI++  R    ++Y  GR
Sbjct: 184 ATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIML-GRSGARKAYIEGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +R++  +EE+ +  + IV+ EIPYQV K+ +IEKIAE +  KRI  +  ++DES  
Sbjct: 243 GSVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + L G L  ++  
Sbjct: 303 HGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLTLHGFLSAFITF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------- 418
           R EV+ RR++F ++    R  +L GL +A  N+DE++A IR                   
Sbjct: 362 REEVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPA 421

Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 ++L+E Q  AIL+LRL+ L +L   ++  EL  L A+ 
Sbjct: 422 GDILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKI 481

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           ++  ++L S ++    I+ E+REVKE FS       RRT   + S        + +IE+E
Sbjct: 482 KEYLAILASRERIMEIISTELREVKEQFSVP-----RRTQIVDWSG---DMDDEDLIERE 533

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V ++  G+I+          K     LS +  KE D +     A+T  ++L  +TDG
Sbjct: 534 DMVVTVTQGGYIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDG 593

Query: 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN 622
             Y L    L        G+AI  ++ +     I      D         +++  ++ G+
Sbjct: 594 MVYKLKTWRLPLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGD 653

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
                 S+     R GK  + +    ++        GD + +V  + + + F   ++   
Sbjct: 654 VRRNALSDFTNVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVF 713

Query: 682 S--RGKGVRLQSYKDGGISDVICFKI---------------------------------- 705
              +  GVR    +  G   V+   +                                  
Sbjct: 714 KGRKSTGVRGIRLQ--GDDRVVSMSVIRHFDASADERAAYLKMRRALAGAPDDGEEPEAA 771

Query: 706 --------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                          E L    S   +   S +      G RGG+G        R G  +
Sbjct: 772 AGDITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRG-RGGMGVQAMDKAMRGGDLV 830

Query: 752 SS 753
           +S
Sbjct: 831 AS 832



 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 19/189 (10%)

Query: 530 IRSLKSH-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHG 587
           +R  K   S  +  +  +  D +               S D +A  L     L      G
Sbjct: 710 VRVFKGRKSTGVRGIRLQGDDRVVSMSVIR----HFDASADERAAYLKMRRALAGAPDDG 765

Query: 588 E---AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--- 641
           E   A    I  +  +++  A        +L +S++G   +    +     R G      
Sbjct: 766 EEPEAAAGDITPDRFEEMQAA-----ENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAM 820

Query: 642 -LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
              +   + +        D + +     + +   +D I   SR   GV++   + G    
Sbjct: 821 DKAMRGGDLVASFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVV 880

Query: 700 VICFKICEG 708
            + +   +G
Sbjct: 881 SVAWIAEKG 889


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 269/757 (35%), Positives = 433/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + +R   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIAKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + +E        +V++ +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTIEN-----GEVVISALPHQASSGKILEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D +M  +F  +D+E  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGLRELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  +++RF 
Sbjct: 356 EWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDPKAELMTRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IKSE   L AE++K+  LL+S ++    I  E+   
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKSEQSELEAERDKLQLLLSSERRMKTLIKKELI-- 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
                   D G  R +   V    KA  +Q ++  E +TVV+S +GW+R  K H VD  +
Sbjct: 474 ----KDGEDYGDDRRSPLVVRGESKALTEQELVPAESVTVVLSEKGWVRCAKGHEVDGKS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDEFLCSAPGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLAPGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + D +   ++ S  G  FI    ++I+  + GK  L + +  K+ L  KV      
Sbjct: 590 EHVLLADESQCYILASDAGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGL-TWID 713
            +  +    ++L+FS+D +P++++GKG ++        K+     +    I E +   + 
Sbjct: 650 SILAITNEGRMLLFSLDALPQLTKGKGNKIIGIPTERAKNREELLIHLNVIPEDMPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 402/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++  P++SIE++LE + GPDFPTGG+I  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLAL-DKNLPRTMNIHRMISVWVRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +D+++  IRN +     K  ++ +F  TE+Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEKFGFTEHQSI 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D L+ +      +L       + I  E++E++++    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   EP+ + IS   +++          K     +S
Sbjct: 483 ------RRTTIEFDADDIRDIEDIIT-NEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++   V
Sbjct: 596 PGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIAAV 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 13/230 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   A L     E      + +  G ++ +            + AL   +GD L  
Sbjct: 594 IRPGEQLAAVLNIKNFENAGFLFLATKHGVVKKVALDAFSNPRKKGIRALEIDDGDELIA 653

Query: 554 ALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A+H  + + +++L +  G A   P   +         ++ +   N    +V   +     
Sbjct: 654 AVHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVVACQIVRDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G     +  +     R G       +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERNGDVLGAISVTDHDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           + +  ++  +  M R  +GVRL   K+G  +  +    + E  T  +   
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDETLTNIEE 823


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 258/766 (33%), Positives = 417/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+MT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       RRT   E+  + +    + +I  EP+ V +S +G+++ +     +   
Sbjct: 478 KEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              K        E D ++    A+T D +L ++  G+ Y L    +        G+A+  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDE 649

Query: 650 MKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    VV     H+ +       + F ++ + EM R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISD 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVG 755



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P  ++     +   +  +    ++  +    + D   KL
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISDDGNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVGVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           ++  SI  I E  R   GV+L +  D  +    C K  E      S+ ++ 
Sbjct: 775 MIRVSIKDIRETGRNASGVKLINTADKVMYVNSCPKEEEPENLETSSAQNL 825


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 275/749 (36%), Positives = 445/749 (59%), Gaps = 23/749 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T++ ++++   LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   +
Sbjct: 2   TIIVDDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALS 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAY 129
             KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY LI GQGN+G++D   S AA 
Sbjct: 62  KHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMDDPKSFAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A+++L  + +   D+   ++    EP + P++ PNLL NGT+GIAVGMAT
Sbjct: 122 RYTEARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN++E+  A+L L+ +P +++++LLE I GPDFPTG  I+ S++ I + Y  G G 
Sbjct: 182 DIPPHNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGS 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            + RA +  E+       I++  +PYQV  ++++E+IA  + AK++P++ D+RDES  + 
Sbjct: 242 VKQRASYNKED-----GEIIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEH 296

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            VR+V+ P++  +D D LM  +F  +D+E    +NMN++ M   PQV  L  +L EWL +
Sbjct: 297 PVRLVIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGY 356

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R E + RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR+ED PK VM+ RFS+T+ Q
Sbjct: 357 RVETVRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAVMMERFSITDRQ 416

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            ++IL LRLR L KLEE +I+ E+D L  E+++++ LL+S  +    I  E+    E F 
Sbjct: 417 AESILELRLRHLAKLEEMKIRGEMDELSKERKQLELLLSSDTRLKTLIRKELTADAEKFG 476

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                  RR+   E  +A KA     ++  EP+T+V+S  GW+++ K H VD ++L+F+ 
Sbjct: 477 D-----DRRSQIVER-KASKALDATELLPTEPLTIVLSESGWVKAAKGHDVDPTSLNFRT 530

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD    ++ A +  +I+ L   G++Y+L A  L S RG GE +   +        V+   
Sbjct: 531 GDRYLTSVKARSNQQIVFLDETGRSYSLSAHTLPSARGQGEPLSGRLQSAPEVRFVSVLA 590

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVV 664
            ++   +L+ ++ G  F+     ++A  + GK    +    ++   + +     D +AV 
Sbjct: 591 VEADKTILLTNTAGYGFVTTLENLLAKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVA 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGRS 718
             + +LL+F+  +IP +++GKGVRL +      +        +     +    + +  R 
Sbjct: 651 SGDGRLLVFAASEIPTLNKGKGVRLINIPQARFTGGQEWMQSVIIVPQQRSLTLHAGRRH 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 DL  + G+RG  G  +P+G  + 
Sbjct: 711 LTLKPADLEHYAGERGKRGHKLPRGLQKV 739


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/780 (33%), Positives = 406/780 (52%), Gaps = 65/780 (8%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++   L E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F   ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG++
Sbjct: 61  NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +VAE +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALIDNP I+I+++L  I GPDFPTGGII+     +  
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIIL-GHSGVRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQV K+ ++EK+AEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++  F  NM  L+ G  P+ M L  +L
Sbjct: 300 RDESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALN-GGKPEQMTLLDML 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEII +IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + ++L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +  + +  E+  ++E F+       RRT F   S        +
Sbjct: 479 AIGEDIADYLGILASRSRIMDIVKSELSALRETFATP-----RRTVFGFGSA---EMDCE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     A+T   +L
Sbjct: 531 DLIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             S+ G  Y      L  G     G A+  ++ L   + I T               ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +++G     + S+ I   R GK  +K+    +++  V   T  D V ++  N + + F 
Sbjct: 651 ATTRGTVRRNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFP 710

Query: 675 IDQIPEM-SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           +  I     R   GVR  +  +G    VI   I E +        +Y +   +     G 
Sbjct: 711 VTDIRVFSGRNSMGVRGINMVEG--DKVISMTILEHVEATSVERSAYIKRAINERRVAGS 768



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 80/253 (31%), Gaps = 30/253 (11%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           +   S    + R      ++       L      +    V+I+  G         IR   
Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFS 718

Query: 535 -SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
             +S+ +  ++  EGD +       T    +  ++  ++  +    +   R  G   + +
Sbjct: 719 GRNSMGVRGINMVEGDKVIS----MTILEHVEATSVERSAYIKRA-INERRVAGSDDEDI 773

Query: 594 IDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
           + ++ + +     + D            LL VS  G        +   + R GK      
Sbjct: 774 LTVDEDGEETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATD 833

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGI 697
             K +   K+     V   D + +V +  +L+   ++ I    R  KGV    + K   +
Sbjct: 834 LSKAAEIGKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKV 893

Query: 698 SDVICFKICEGLT 710
             V      E  T
Sbjct: 894 VSVERISESENDT 906


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 266/757 (35%), Positives = 437/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ +S+R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAINLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V PS+ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  +E+L+E++ GPD+PT   I+  R  I + Y 
Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  + RA + VE     S  IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGKGSIKARAVYAVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VRI++ P++  +D D LM  +F  +D++  F +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPVRIIVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGLKQILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR + R+  +  R+ IL  L++A+LNIDE+I IIR ++ PK  ++SRF 
Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENPKTELMSRFQ 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DAIL+L+LR L KLEE +I SE D L  E++K++ LL+S ++    I  E+   
Sbjct: 416 ISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKLELLLSSDRRLKTLIKKELIHD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E S   KA  +Q +   E +TVV+S +GW+R  K H +D  A
Sbjct: 476 GETYGD-----DRRSPLVERSE-SKALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDGHA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+++      L S R  GE I    +L+  + +
Sbjct: 530 LSYKSGDGFLCSAVGRSNQPAVFIGSTGRSFATDTHTLPSARSQGEPITTRFNLSPGEVM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  F+    ++++  + GK  L + +  K+     V     +
Sbjct: 590 EHLLLGDDEKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPQLVDKSKVE 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWID- 713
            +  +    ++L+FS++ +P++S+GKG ++        K+     +    + E ++    
Sbjct: 650 SILAITNEGRMLLFSMESLPQLSKGKGNKIIGIPTERAKNREELLIHLHVVPEDISVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 259/766 (33%), Positives = 417/766 (54%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP  +++++LE++ GPDFPTGGI +  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGI-IYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF 
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFI 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       RRT   E+  + +    + +I  EP+ V +S +G+++ +     +   
Sbjct: 478 KEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQN 529

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              K        E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I+       +     L   +  G       SE  +N   G   + +   ++
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDE 649

Query: 650 MKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    VV     H+ +       + F ++ + E+ R  +GV      +            
Sbjct: 650 LVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIGIKLNENDFVVGAVVISG 709

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +G   +  +     +           RGG G +  K   ++G  + 
Sbjct: 710 DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 755



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   EGD L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFESNRSCGIRAIVLDEGDELVSAK 654

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCK 613
                 + LL+++  G     P  ++         +   I LN N  +V A V      K
Sbjct: 655 VVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVIG-IKLNENDFVVGAVVISGDGNK 713

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  ++ V  +   + ++  + 
Sbjct: 714 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGIISVDDENLDLMILTASA 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K++  SI  I E  R   GV+L +  D
Sbjct: 774 KMIRVSIKDIRETGRKTSGVKLINTAD 800


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 383/769 (49%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G      F K 
Sbjct: 27  RVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNGGFSKC 86

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +
Sbjct: 87  ARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQRYTECK 146

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT IP HN
Sbjct: 147 MAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATRIPPHN 206

Query: 196 VQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++EI +AAL  ++NPE S E+L    ++ I GPDFPTG  I+  R  I ++YR GRG   
Sbjct: 207 LREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRTGRGSIV 265

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE S     
Sbjct: 266 QRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSDRAGT 324

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  FP NM  L  G VP+ + LDG +  W+ H+  
Sbjct: 325 RLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHYWVVHQVN 383

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V    L    E Q
Sbjct: 384 VIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLLSVDEVQ 443

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ E+   ++
Sbjct: 444 ADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAEIANKWA 503

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                         +         + +I +E + V I+  G+         RS +     
Sbjct: 504 DERKTA--------IVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKG 555

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     +E D ++    + + D IL  +  G+ Y   A  +  G     G+ +  L+   
Sbjct: 556 VKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQ 615

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----- 649
             + I        ++    L++ + +G       ++   N   G   +K+  + +     
Sbjct: 616 PEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQ 675

Query: 650 -MKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +  V+    + + +V  + + L F+   DQ+  M R   GV    ++D    +++   +
Sbjct: 676 LVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDD--DELLTMDV 733

Query: 706 C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              G          Y +  +     +  RGG+G  V       GK + +
Sbjct: 734 VRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGA 782



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 21/224 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----D 549
           +        L  +  E +   V+ + RG+++       D +      A+  +E      D
Sbjct: 615 QPEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPD 674

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A+ A  T+ ++L+S DG++    A +    R  G +   +  +    + +++T  V
Sbjct: 675 QLVSAVLADDTEDLILVSRDGQSLRFTASD-DQLRPMGRSTSGVTGMRFRDDDELLTMDV 733

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAV 663
                 L VV+  G A   + SE     R G   K    V +  K+   +    +  V V
Sbjct: 734 VRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGALVTDEESEVLV 793

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    K++   +D++ +  R  +GV     +  G   VI   + 
Sbjct: 794 IMAGGKIVRSRVDEVSKTGRNTQGVIF--SRADGDDRVIAVTLN 835



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 93/290 (32%), Gaps = 38/290 (13%)

Query: 414 KPVMVSRFSLTENQVDAILNL----RLRSLRKLE-----EYQIKSELDNL-----LAEKE 459
           +         T +  D IL      R+   +  E            + NL          
Sbjct: 562 REDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIA 621

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKA-TLQQAM 514
           ++  + +   +++  +A +   VK+     +  +   G       E    +    +   +
Sbjct: 622 QVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQLVSAVL 681

Query: 515 IEKEPITVVISNRGW----------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +     +++S  G           +R +   +  ++ + F++ D L           + 
Sbjct: 682 ADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRPGADLF 741

Query: 565 LLSTDG--KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++  G  K   L    +    G G  +  L+       +V A V D   ++LV+ + G 
Sbjct: 742 VVTEGGYAKRTDLSEYRVQGRGGLGIKVANLV--EARGKLVGALVTDEESEVLVIMAGGK 799

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLV---VKVTGDHVAVVGEN 667
                  E+    R   G  F +   ++++  V   V  +GD      EN
Sbjct: 800 IVRSRVDEVSKTGRNTQGVIFSRADGDDRVIAVTLNVDNSGDEEETDSEN 849


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/783 (30%), Positives = 396/783 (50%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V E ++   L+  + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 28  DNTDYGLMVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDG 87

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 88  GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDD 147

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 148 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 207

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+P+ S E+LLE     I GPDFPTG  I+   + I 
Sbjct: 208 VGMATNIPPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIE 266

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+V+TE+PYQV   RL+  I E +   +I  + D
Sbjct: 267 QAYRTGRGLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIAD 325

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 326 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ++ W+ H+ EV+ RR+++  +  + R  IL+G L A   IDE+IA+IR  +  +     
Sbjct: 385 FIRHWVGHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTG 444

Query: 420 RFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              L    E Q DAIL ++LR L  LE  +I  E + L+      + +L   ++Q   + 
Sbjct: 445 LMDLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVG 504

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 505 DELDEIVSKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRTKAD 556

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 557 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 616

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G   ++
Sbjct: 617 GQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 676

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V +    L F  +   +  M R   GV+   ++
Sbjct: 677 LMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFR 736

Query: 694 DGG---ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G      DV+     + L  + + G  + +        L  R G G    +     G  
Sbjct: 737 EGDELLDMDVVWGDSDKDLFVVTNEG--FAKRTAISEYRLQGRNGFGVKAVQLAEGRGSL 794

Query: 751 LSS 753
           + +
Sbjct: 795 VGA 797



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF 606
           D L  A   +  D I+L+S  G +    A +    R  G     +  +      +++   
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLDMD 745

Query: 607 VY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
           V   DS   L VV+++G A     SE     R G     V   E     +  V+    D 
Sbjct: 746 VVWGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGAVIVEEDDQ 805

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  + ++ K++  ++D++    R   GV     K     ++I     E
Sbjct: 806 IMAIMKSGKVIRSNVDEVKRTGRTTQGVTF--AKPDKNDEIISIARNE 851


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 242/773 (31%), Positives = 408/773 (52%), Gaps = 33/773 (4%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M ++N    + N     ++    L   +   +L Y++S I  RA+PD+RDG KPV RRI+
Sbjct: 1   MALENFMEFDENNFDPGHITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM+EM       ++K ARIVG+ +GK HPHGD S+Y +LV +AQ +  R  L+ G GNF
Sbjct: 61  FAMNEMNNGPDKPYRKCARIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD AAA RYTEARM++++  IL+ +++D VD  D Y+ E+ EP+V P++FPNLL N
Sbjct: 121 GSMDGDGAAAMRYTEARMSKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT++  HN++E  +A +A ++NPEIS+ +L++++ GPDFPTGG I+  R  
Sbjct: 181 GSSGIAVGMATNVAPHNLKETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYIL-GRSG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I +++  GRG   +RA+   EE+  G   IVV EIPY V K+ L+E+I  L   K I  +
Sbjct: 240 IRKAFETGRGSIVMRAKTHFEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES      V+    + +  ++++  ++ ++ +++ F +N  VL  G  P++  + 
Sbjct: 300 TDLRDESNMKGIRVVVELRKDVQAEVVLNQLYRMTALQSNFGVNNVVLFDGA-PRLAGMK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-- 416
            +LK ++  + EV+ RR++F ++    R  IL+GL IA   +DE+I  IR     +    
Sbjct: 359 ELLKGYIDFQLEVIRRRTAFELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALI 418

Query: 417 -MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++++F L E Q  AIL+++ R L  LE  +I++E  +LL +    + +L   ++  + +
Sbjct: 419 NLMNKFPLDEIQAKAILDMQFRRLTGLERDKIENEYQDLLLKIADYEDILAHKERVIDIV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+K  +        RR+   E+  AD     + +I  E I V +S  G+++    
Sbjct: 479 KNELTEIKAKYGSP-----RRS---EIIDADAEMEDEDLIPVEDIMVTLSTNGYVKRLTT 530

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                       +  +   + DS++  ++  T D +LL +  G+ + L   N+   S   
Sbjct: 531 NTYSVQNRGGKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFRLRGFNIPNFSRTS 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            G  I  L++++ ++ +          + T  L  V+ KG       SE     + GK  
Sbjct: 591 KGIPIINLVNMDKDEKVKAMVPVKKNDEQTKFLFFVTKKGIVKRTAISEFENIMKNGKKA 650

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + ++ ++++  V    G   V + G N K +    D++    R   GV+   +   G S 
Sbjct: 651 ILLNEDDQLAFVKPTDGQAEVLIAGANGKAVRILEDKVRPQGRSAHGVKG--FNTDGSSV 708

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           V      EG   +    +   +  +     L  RG  G    K   ++G  +S
Sbjct: 709 VGVATTLEGFNVLTVTEKGIGKVSSIASFRLTNRGSKGVKAAKINEKTGDLIS 761



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 13/201 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+      ++ +G ++                A+   E D L           +L+   
Sbjct: 617 DEQTKFLFFVTKKGIVKRTAISEFENIMKNGKKAILLNEDDQLAFVKPTDGQAEVLIAGA 676

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +GKA  +    +         ++          +V          +L V+ KG   +   
Sbjct: 677 NGKAVRILEDKVRPQGRSAHGVKGFNT--DGSSVVGVATTLEGFNVLTVTEKGIGKVSSI 734

Query: 629 SEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           +      R  KG    K++    + + +        V ++ E   ++  S+DQI E SR 
Sbjct: 735 ASFRLTNRGSKGVKAAKINEKTGDLISMKAVSDDQDVMIMTEGGIVIRISLDQIAESSRS 794

Query: 685 K-GVRLQSYKDGGISDVICFK 704
             GV L       +S V    
Sbjct: 795 SMGVHLIRVDQDKVSTVAIVD 815


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 237/743 (31%), Positives = 384/743 (51%), Gaps = 34/743 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KSA  VG
Sbjct: 19  DVKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEARM+++A
Sbjct: 79  AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  +D+D +++   ++E   EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ 
Sbjct: 139 VEMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I++P+I +  L+E+I GPDFPT GII+  R  I  +Y  GRG   +R R  +EE
Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEE 257

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   I++TEIPY V K+RLIE +AEL+  KRI  +  + DE+      ++    +  
Sbjct: 258 TKNGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDA 317

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +  +++  ++  + ++    + M  +   +VP+VM L  ++++++  + EV+ RR+ + +
Sbjct: 318 NAQVILNQLYQYTQLQDTVGVIMLAI-DHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDL 376

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDAILNLRL 436
           +    R  IL+GL  A   +DE+IA IR       + K  ++ +F   + Q DAI+ L+L
Sbjct: 377 KKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQL 436

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  LE  +I+ EL  L A+ E  + +L +  +    +  E+ ++K+ F        RR
Sbjct: 437 GRLAGLEILKIEEELSGLQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDE-----RR 491

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E     ++  G+I+          K     +S +  KE 
Sbjct: 492 T---EIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEE 548

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++      T D +L ++  G+ + +    +   S    G  I  L+ L   + +    
Sbjct: 549 DIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIINLLQLAEGEKVTNML 608

Query: 607 VYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
            Y          + +V+ +G        +     + G   + ++  + +      TG D 
Sbjct: 609 CYPKDEDNKGGFVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDM 668

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRS 718
           + V   N + + F+      M R G GVR     +G   +V+   IC EG T +      
Sbjct: 669 LIVATRNGQAIRFNEADARPMGRSGHGVRAIKLAEG--DEVVGVCICREGGTVLTVTENG 726

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
             R  +     +  RGG G    
Sbjct: 727 KGRRSDIDTYRITARGGKGIRNY 749



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 10/213 (4%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRIL 564
            +    K     +++ +G I+              L  +   EGD+L         D ++
Sbjct: 611 PKDEDNKGGFVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLI 670

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + +G+A      +       G  ++  I L    ++V   +      +L V+  G   
Sbjct: 671 VATRNGQAIRFNEADARPMGRSGHGVRA-IKLAEGDEVVGVCICREGGTVLTVTENGKGR 729

Query: 625 IVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
             +        R GK       S++K+  V  V   D V +  +   ++    ++IP  S
Sbjct: 730 RSDIDTYRITARGGKGIRNYDASKDKVAAVKIVDDIDDVLLSSQEGIIIRLHANEIPVQS 789

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           R G GVR+    +     V+     +     +S
Sbjct: 790 RYGSGVRVMRLGENDKVMVLARTDHDDEAQTES 822


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 284/755 (37%), Positives = 442/755 (58%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++    V    + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLPRPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+D+P+ SI  L E++ GPD+P+   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYA 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IVVT +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYEKENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F  +D+E  + +N+NV+ +   PQV  L  +L+
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNLKTLLE 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R++ ++RR+ +L+GLL+A+LN+DE+I IIR+ED+PKP +++RF+
Sbjct: 356 EWLRFRSDTVVRRLNHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPALIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL  RLR L +LEE +I+ E D L  E+E++ ++L S  +    I  E+   
Sbjct: 416 LSEEQTDYILETRLRQLARLEEMKIRGEQDALAKEREQLQAVLASKTKLKKLIKDELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  ++  EP+T+V+S +GWIR+ KSH VD + 
Sbjct: 476 AKKFGDA------RRSPLVQREAAQAIDETELVPSEPMTIVMSEKGWIRAAKSHDVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +++GDSL  A+   +T ++  L ++G+AY+  A  L S RG+GE +            
Sbjct: 530 LAYRDGDSLLAAVRGRSTQQVAFLDSEGRAYSTLAHTLPSARGNGEPLTGRFSPAAGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
                 ++  ++++ SS G  FI     + +  + GK  L ++   K+     V     D
Sbjct: 590 QALATGENDTRVVLASSHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVGNADTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL F +  +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGHLLAFPVADLPELDKGKGNKIIDIPKAKLGTERVVAIAAVTPGNTLLVKSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  +LG R   G L+P+G+ +  + 
Sbjct: 710 QRTMSLSFKDLDAYLGARASRGGLLPRGWQKVDEL 744


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/761 (31%), Positives = 403/761 (52%), Gaps = 36/761 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KS
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRLAQ +  RYP++  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VAE ++  ++++ VD +  Y+E   EP V P+  PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC   LA+ID+P ++++ L+E++ GPDFPTGG    ++  I E+Y  G  G +VR +
Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGG--RITKTGIREAYATGHSGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             +EE   G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES   D   ++ 
Sbjct: 241 ARIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVV 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + ++T + + +N+  +G  P+V+PL   ++ +L HR +V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQTTYTV-INLSIVGGEPRVLPLLNTMQYFLDHRADVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  +L+GLL A  +IDE+I++IR  +   + +  ++ RF LTE Q  AI
Sbjct: 359 RTRYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVRFGLTEIQSQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++++E D L    E + S+L   K  W +I  EIR +++ +     
Sbjct: 419 LDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGDEKLLWREIKKEIRAIRDNYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RR+T  E+        ++ +I  E + + ++  G+++  K  +              
Sbjct: 477 ---RRSTITELEE---DIGKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQGRGGRGSSGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQ 600
             +E D         T D +L  +  G+ +     +L        G  I+ L+  L  ++
Sbjct: 531 KLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPSLREDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I +      +D     +  + KG       +E    T  G   + +   +++  V  V 
Sbjct: 591 NIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNITSAGLIAINLQPGDELIGVGIVN 650

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI----CEGLTW 711
             DHV +   N K + F  D++    R   GV     ++G    V+   +     E    
Sbjct: 651 DIDHVVLATRNGKAMRFESDEVRATGRATQGVIGIRLREGEDDAVVSMALVPGGDEASEL 710

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +     +           RGG+G +      ++GK ++
Sbjct: 711 LAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTEKTGKLVT 751



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 22/235 (9%)

Query: 482 VKEIFSKSTDLGRRRTTFCE-------VSRADKATLQQAMIEKEPITVVISNRGWIRSL- 533
            ++I+         + T                + L     ++    +  + +G ++   
Sbjct: 561 HEKIYDLPEAGRDAKGTHIRNLLPSLREDENIASVLSVGGFDEPGCFIFATRKGVVKKTL 620

Query: 534 -----KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHG 587
                   S  L A++ + GD L      +  D ++L + +GKA    +  +  +GR   
Sbjct: 621 ITEYGNITSAGLIAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQ 680

Query: 588 EAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I + +    +  +V+  +    D   +LL VS  G        +  A  R G   + +
Sbjct: 681 GVIGIRLREGEDDAVVSMALVPGGDEASELLAVSECGLGKRTPVGDYPAKGRGGMGVITL 740

Query: 645 SSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              EK    + L      + + V+ E   ++   ++++    R  +GV++ +  +
Sbjct: 741 DVTEKTGKLVTLARVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAE 795


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 421/767 (54%), Gaps = 37/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +  G     G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKI 705
             +  V   ++ +     + + F +++  +  R  +GVR   +K        +DVI  + 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E LT    + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTV---SEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 653 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 710 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A    + D+ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  ++   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVISMKLSTKTGN--VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/831 (31%), Positives = 414/831 (49%), Gaps = 108/831 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 26  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYD 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  +L GL +A  N+DE++A IR+                              
Sbjct: 384 LRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPAAEIESYLRLIDD 443

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++L+E Q  AIL+LRL+ L ++   ++  EL++L A+ ++   +L+S ++
Sbjct: 444 PLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKEYLDILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+REVKE F+       RRT   + S        + +IE+E + V +++ G+I
Sbjct: 504 IMGIIADELREVKENFAVP-----RRTQIVDWSG---DMEDEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 556 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
               G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 616 SGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNALSDFTNV 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQS 691
            R GK  + +    ++      +  D V +V  + + + F    +      +  GVR   
Sbjct: 676 KRNGKIAMDLPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDVRVFKGRKSTGVRGIR 735

Query: 692 YKDGG--------------------------------------ISDVIC----------- 702
             DG                                         + +            
Sbjct: 736 LNDGDRVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDDAEPSDEEAVADPNFSTELYAE 795

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               E L    +AG S   S +      G RGG+G +      R G  ++S
Sbjct: 796 MSAVENLILTITAGGSGKLSSSHDYPVRG-RGGMGVMAMDKAMRGGPLVAS 845



 Score = 44.7 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 75/256 (29%), Gaps = 48/256 (18%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           +   S  T++ R      ++    +    +   E + + + ++N G         +R  K
Sbjct: 666 RNALSDFTNVKRNGKIAMDLPEGVELVNARICSEDDDVML-VTNSGRAIRFPTTDVRVFK 724

Query: 535 SH-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RGHGEAIQL 592
              S  +  +   +GD +          +    + + +   L     ++G     E    
Sbjct: 725 GRKSTGVRGIRLNDGDRVVSMSVIR-HSKY---TPEQRTAYLKMRRAMAGLTDDAEP--- 777

Query: 593 LIDLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                 +++ V    + +            +L +++ G+  +    +     R G   + 
Sbjct: 778 -----SDEEAVADPNFSTELYAEMSAVENLILTITAGGSGKLSSSHDYPVRGRGGMGVMA 832

Query: 644 VSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
           +        +     V   D + +     + +   +D I   SR  G             
Sbjct: 833 MDKAMRGGPLVASFPVEMDDQIMLATSKGQSIRVPVDGISFRSRSAG------------G 880

Query: 700 VICFKICEGLTWIDSA 715
           V  F   +G   +  A
Sbjct: 881 VKVFNTGKGEEVVSVA 896



 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +        +V +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 818 HDYPVRGRGGMGVMAMDKAMRGGPLVASFPVEMDDQIMLATSKGQSIRVPVDGISFRSRS 877

Query: 638 --GKTFLKVSSEEKMKLVVKVTGD 659
             G         E++  V ++   
Sbjct: 878 AGGVKVFNTGKGEEVVSVARIADQ 901


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/792 (29%), Positives = 384/792 (48%), Gaps = 55/792 (6%)

Query: 1   MGVDNISNSNTLVEE------NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           M  D     + +  E       +  V L+  ++  YL YA+S I  RA+P + DG KPVH
Sbjct: 1   MADDITPEPDEVRSEPAHNHGRIDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+I+ M + G     +F K AR+VGEV+G  HPHGD  +YD+LVRL QP+  RYPL  G
Sbjct: 61  RRVIYGMYDGGFRPDKSFSKCARVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+     AAA RYTE +M+Q+A  +++ ++E+ VDF D Y+ +  EPVV PS+FPN
Sbjct: 121 QGNFGSPGNQGAAAPRYTETKMSQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGG 230
           LL NG+ GIAVGMAT+IP HN++E+   AL  ++NP+ + E+    L+E I GPDFPT  
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVSAGALWALENPDATREELLEALMERIPGPDFPTAA 240

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
            I+ +R  I ++YR GRG   +RA   +EE+ +G  C+V+TE+PYQV    +  KI +L 
Sbjct: 241 QILGTR-GIKDAYRTGRGSITMRAVVNIEEI-QGRTCLVITELPYQVNPDNVAVKIGDLA 298

Query: 291 IAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              +I  + DIRDE S    + ++    R     +++ +++  + ++  F  NM  +  G
Sbjct: 299 REGKITGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDG 358

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            VP+ + LDG +  W+ H+  V+ RR+ +R++  + R+ IL+G L A   +DE+IA+IR 
Sbjct: 359 -VPRTLSLDGFVSHWIDHQVNVIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRR 417

Query: 410 EDKPKPVMVSRFSL---TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               +        L    + Q  AIL+++LR L  LE  +I  E   L A     + +L 
Sbjct: 418 SPTAQDANEGLQKLLDIDDIQAQAILDMQLRRLAALERQKIVDEATELEARIADFNDILA 477

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +Q   I  E+  + + F        RRT        D     + +I +E + + ++ 
Sbjct: 478 SPARQRTIIRDELTGIVDRFGD-----DRRTQIL--HGFDGDVSIEDLIAEEEMVITVTR 530

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+                +     +  D ++      T   +L  +  G+ Y   A 
Sbjct: 531 DGYIKRTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHHWLLFFTNKGRVYRSKAY 590

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIA 633
            +        G+ +  L+ L  +++I        Y     L++ +  G        E   
Sbjct: 591 EVPEAGRDAKGQHVANLLALQPDEEIAQILDIRDYSVATYLVLATRNGLVKKTRLDEYDT 650

Query: 634 NTRKGKTFLKVSSE-------------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ-- 677
           N + G   +K+  +             +++   + V  GD + ++      L FS     
Sbjct: 651 NRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILLISRLGMSLRFSATDNA 710

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GV+   +++G           +   ++ + G  Y +        +  RGG+
Sbjct: 711 LRPMGRSTSGVKGMDFREGDSLLSASVAKDDEFVFVVTEG-GYAKRTAVTEYRMQNRGGL 769

Query: 737 GSLVPKGFPRSG 748
           G  V +     G
Sbjct: 770 GIKVARLTDDRG 781



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEG-------------DSLKIALHAHTTDR 562
           V+ +  G ++  +    D +      A+  +               D L  AL     D 
Sbjct: 632 VLATRNGLVKKTRLDEYDTNRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDD 691

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           ILL+S  G +    A +  + R  G +   +  +D      +++A V      + VV+  
Sbjct: 692 ILLISRLGMSLRFSATD-NALRPMGRSTSGVKGMDFREGDSLLSASVAKDDEFVFVVTEG 750

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSID 676
           G A     +E     R G         +        ++   GD V VV  + K++  ++ 
Sbjct: 751 GYAKRTAVTEYRMQNRGGLGIKVARLTDDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVA 810

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           ++P   R   GV     + GG   +I   
Sbjct: 811 EVPAKGRDTMGVVF--ARAGGDDRIIAIA 837



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 78/227 (34%), Gaps = 9/227 (3%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R  S+        ++ L       E          +Q   IA ++R      +  T
Sbjct: 619 ILDIRDYSVATYLVLATRNGLVKKTRLDEY------DTNRQGGVIAIKLRGQVSDEADET 672

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           + G        +   +   +         +    ++   +R +   +  +  + F+EGDS
Sbjct: 673 EQGGADELVSALLVDEGDDILLISRLGMSLRFSATDNA-LRPMGRSTSGVKGMDFREGDS 731

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L  A  A   + + +++  G A              G  I++    +    +    +   
Sbjct: 732 LLSASVAKDDEFVFVVTEGGYAKRTAVTEYRMQNRGGLGIKVARLTDDRGVLAGGMMVSE 791

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
             ++LVV + G       +E+ A  R   G  F +   ++++  + +
Sbjct: 792 GDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARAGGDDRIIAIAR 838


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 235/783 (30%), Positives = 400/783 (51%), Gaps = 47/783 (6%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + ++   +V E ++   L+  + E YLAYA+S I +RA+PD+RDG KPVHRR+++AM + 
Sbjct: 42  DNTDYGLMVGERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDG 101

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + K AR+VGEV+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D
Sbjct: 102 GYRPDRGYSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDD 161

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTE RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG+SGIA
Sbjct: 162 PAAAMRYTECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIA 221

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIV 240
           VGMAT+IP HN++E+ E     +D+PE S E+LL+     I GPDFPTG  I+   + I 
Sbjct: 222 VGMATNIPPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIE 280

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL+  I E +   +I  + D
Sbjct: 281 QAYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIAD 339

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD 
Sbjct: 340 MRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 398

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            ++ W+ H+ +V+ RR+++  +  + R  IL+GLL A   I+E+I +IR+    +  +P 
Sbjct: 399 FIRHWINHQIDVVARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPK 458

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q   + 
Sbjct: 459 LMEFLDIDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQRRIVG 518

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ E+   +        RRT     S        + +I +E + V +++ G+I+     
Sbjct: 519 DELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIPEENVVVTVTHSGFIKRTKAD 570

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     +E D +       T + +L  +  G+ Y L A  L  G     
Sbjct: 571 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSK 630

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G   ++
Sbjct: 631 GQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVR 690

Query: 644 VSSE------EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK 693
           + ++      +++         D + +V      L F+ +   +  M R   GV+   ++
Sbjct: 691 LMTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPMGRQTAGVQGMKFR 750

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DG   +++   +  G +    +      + +        L  R G G    +     G  
Sbjct: 751 DG--DELLAMDVVWGDSDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGRGSL 808

Query: 751 LSS 753
           + +
Sbjct: 809 VGA 811



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF 606
           D L  A   +  D I+L+S  G +    A +    R  G     +  +      +++   
Sbjct: 701 DELIGAALCNADDDIMLVSRKGMSLKFTAND-EQLRPMGRQTAGVQGMKFRDGDELLAMD 759

Query: 607 VY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
           V   DS   LLVV+ +G A     SE     R G     +   E     +  ++    D 
Sbjct: 760 VVWGDSDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGRGSLVGALIVSEDDQ 819

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           V  + ++ K++   + ++    R  +GV L   K     ++I   + 
Sbjct: 820 VMAIMKSGKVIRSDVAEVKRTGRNTQGVTL--AKPDKNDEIISIALN 864


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 271/755 (35%), Positives = 411/755 (54%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     FKKS
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTEA+
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A+IDNPEI  + LL Y+ GPDFPTGGII   ++ I  +Y  G+GG  VRAR
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   ++F 
Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  +F ++ ++T F +N   L  G  PQ + L  I++ +++HR+EV+ RR
Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALV-GGKPQTLTLKEIIQHFISHRKEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NIDE+IAII+     D  +  ++ RF L+E Q  AIL
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+ + +      
Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------ 546
             RRT        D     + +I+KE + V++S  G I+ +   +        K      
Sbjct: 482 --RRTEIVAEEAEDLDI--EDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD- 601
               D +     A T D IL LS +GKAY L    +  G     G++I+ L+ L+ ++  
Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQV 597

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +V+   ++   ++ ++++KG A  +    +     +G   + +   + +       G 
Sbjct: 598 SAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLTEGK 657

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +V      L    ++   M R  +GV     + G         + EG   +     
Sbjct: 658 GEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEVC-GAVPVEEGKDLLLVTSG 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +           RG  G +  K   R+G+  +
Sbjct: 717 GYGKRVEFSQFTAHGRGTKGQIAYKVSARTGELAA 751



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 81/210 (38%), Gaps = 12/210 (5%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEG 548
           R            A +     E+E    +I+ +G  + L       + +  + A+  ++G
Sbjct: 586 RSLVQLSPDEQVSAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKG 645

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A        +++++  G           S       +   + L    ++  A   
Sbjct: 646 DYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTA-VKLEPGDEVCGAVPV 704

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTG-DHVAVV 664
           +    LL+V+S G    VE S+  A+ R  KG+   KVS+   ++  V+ V   D V +V
Sbjct: 705 EEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSARTGELAAVLSVEAKDDVMIV 764

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                ++  ++  I  + R   GV++ + +
Sbjct: 765 TAQGNIIKLAVKDISVLGRQAAGVKVVNLE 794



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
           R R             +   + E +   ++++ RG          RS+   +  ++A+  
Sbjct: 633 RTRGVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKL 692

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A+       +LL+++ G    +      + GRG    I   +     + +  
Sbjct: 693 EPGDEVCGAVPVEEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSARTGE-LAA 751

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVT 657
               ++   +++V+++GN   +   +I    R   G   + +   + +  V +V 
Sbjct: 752 VLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVA 806


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 234/773 (30%), Positives = 397/773 (51%), Gaps = 52/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 3   RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G  HPHGD S+YD+LVRLAQP+  R PL+   GNFG+   D AAA RYTE +
Sbjct: 63  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ +DE+ VDF D Y+  + EP V P++FPNLL NG++GIAVGMAT+IP   
Sbjct: 123 LMPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP-- 180

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             ++   A   +++P+ S E+    L+E I GPDFP+G ++V  R+ I E+YR GRG   
Sbjct: 181 --QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVV-GRKGIEEAYRTGRGSIT 237

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   +I  + D+RDE S+   +
Sbjct: 238 MRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 296

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D++T F  NM  L  G VP+ + +D  ++ W+ H+ E
Sbjct: 297 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 355

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E Q
Sbjct: 356 VIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 415

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q + ++ E+  + E F 
Sbjct: 416 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNEILRSESRQRSIVSEELAAIVEKFG 475

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RR+        D     + +I +E I V I++ G+++          K     
Sbjct: 476 D-----DRRSKLV---PFDGDMSMEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKG 527

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     K+ D +     + T   +L  +  G+ Y   A  L        G+ +  L+   
Sbjct: 528 VRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDAGRDARGQHVANLLAFQ 587

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------- 646
            ++ I        Y++   L++ +  G        +  +    G   + +          
Sbjct: 588 PDEKIAQILAIRDYEAAPYLILATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADG 647

Query: 647 -EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVI 701
             +++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++
Sbjct: 648 AADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGRATSGVKGMSFREG--DELL 705

Query: 702 CFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    T++  +    Y +        +  RGG+G    K     G  + +
Sbjct: 706 SMSVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 758



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 584 RGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--- 638
           R  G A   +  +      ++++  V      +   +  G A      E     R G   
Sbjct: 684 RPMGRATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGI 743

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           K    V     +   + V   D +  +     ++   ++++ E  R   GV+L +   G 
Sbjct: 744 KAAKIVEDRGSLVGALVVDETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL--GK 801

Query: 697 ISDVICFK 704
              V+   
Sbjct: 802 RDAVVGIA 809



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A   P          G  
Sbjct: 683 LRPMGRATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLG 742

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V D T ++L ++  G       +E+    R   G   + +   
Sbjct: 743 IKAAKIVEDRGSLVGALVVDETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKR 802

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 803 DAVVGIAR 810


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 267/752 (35%), Positives = 435/752 (57%), Gaps = 24/752 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E ++   +   +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A
Sbjct: 6   NFNSEGLERRPMSEYVEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASA 65

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAY 129
            +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  S AA 
Sbjct: 66  KYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE+++++ A+ +L  + +   ++R  ++    EP + P++ PN+L NGT+GIAVGMAT
Sbjct: 126 RYTESKLSKYADALLSELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+  A L ++DNP+  + +L+E+I  PD+PT   I+ S++ I   Y  GRG 
Sbjct: 186 DIPPHNLNEVVSACLHMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRGS 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308
            ++RA W  E+       I+VT +P+Q   S+++E+IA  +  K++P++ED+RDES  + 
Sbjct: 246 IKMRAIWHREDGD-----IIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHEN 300

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             R+V+ P++  +D D LM+ +F   D+E  + +N+N++ +   P VM L  I+K+WL  
Sbjct: 301 PTRLVITPRSNRVDVDALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIKDWLLF 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R +V  RR S+R++ +D+R+ +L GLLIA+LNIDE+I +IR ED+PKP +++RF L++ Q
Sbjct: 361 RTDVTRRRLSYRLEKVDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPALIARFGLSDIQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL+ +LR L +LEE++I++E D L  EK +++ +L S  +    +  E++   E F 
Sbjct: 421 AEYILDTKLRQLARLEEFKIRAEQDELAKEKAELELILGSETRLKTLVKKELKAAAEEF- 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                G  R +         A  ++ ++  EPITVV+S++GWIR  K H +D + L +K 
Sbjct: 480 -----GDERRSPLVARGEASAFNEKDLLTAEPITVVLSDKGWIRGAKGHDIDPTTLSYKS 534

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           GD    A    +   + L  + G+ Y L    L S RG GE     +++          +
Sbjct: 535 GDKFLSAACGRSNQNVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALFTDVIM 594

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVG 665
                K+L+ +  G  FI +  ++    R GK  + +    K+     V   +  +A V 
Sbjct: 595 GADDQKVLLGTDAGYGFIGKIGDLYTKNRAGKAVVSLPKGAKILSPKMVNDANALIAAVS 654

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRS 718
              +LL+F I ++PE++RGKG ++ +        ++  + D       + L  + S  R 
Sbjct: 655 NEGRLLVFPIAELPELARGKGNKIINIPGSRLQAREEFVIDYGVISEGDSL-VVHSGKRY 713

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL  + G+RG  G  +P+GF +  K 
Sbjct: 714 LVMKAKDLEHYSGERGRRGHKLPRGFQKVDKL 745


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 260/758 (34%), Positives = 411/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ GRG  +VRA
Sbjct: 190 RMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGI-IYGKAGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIADLNGILRSEDRLNGVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   EV         + +I  EP+ V +S +G+++ +     +      K     
Sbjct: 485 ---RRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+A+  LI L  ++ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   +  G       SE  +N    G   + +   +++    VV 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +       + F ++ + EM R  +GV      +            +G   +  
Sbjct: 659 KNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIGIRLNENDFVVGAVVISGDGNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  + 
Sbjct: 719 SENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 756



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 16/229 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STC 612
                  + LL+++  G     P  ++     +   +   I LN N  +V A V      
Sbjct: 655 KVVDKNAKHLLIASHLGIFIKFPLEDVREMGRNARGVIG-IRLNENDFVVGAVVISGDGN 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGEN 667
           KLL VS  G             +R GK  + +   +K   +  V+ V  +   + ++  +
Sbjct: 714 KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTAS 773

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            K++  SI  I E  R   GV+L +  D  +    C K  E      S+
Sbjct: 774 AKMIRVSIKDIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSS 822


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 257/772 (33%), Positives = 421/772 (54%), Gaps = 31/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +++ +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++A
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP H + EI +A   +++NP  +++++LE++ GPDFPTGGI +  +  IV
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGI-IYGKAGIV 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + +
Sbjct: 240 EAYKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +
Sbjct: 299 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLEL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  +
Sbjct: 358 LRLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNAL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  
Sbjct: 418 MERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKT 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE FS             E+  + +    + +I  EP+ V +S +G+++ +   +
Sbjct: 478 ELLEVKEQFSSP--------RHTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKA 529

Query: 538 VDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHG 587
            +      K        E D ++    A+T D +L ++  G+ Y L    +        G
Sbjct: 530 YEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMG 589

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
           +AI  LI L  ++ I+       +     L   +  G       SE  +N    G   + 
Sbjct: 590 KAIVNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIV 649

Query: 644 VSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++     V  +  H+ +       + F ++ + E+ R  +GV+     +      
Sbjct: 650 LDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVG 709

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +G   +  +     +           RGG G +  +   ++G  +S
Sbjct: 710 AVVISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQKTGNLVS 761



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 600 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSA 659

Query: 555 LHA-HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +L+ S  G     P  ++         ++ +    ++  +    + D   K
Sbjct: 660 KVVDKNVKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDGNK 719

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + 
Sbjct: 720 LLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASA 779

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           K++  SI  I E  R   GV+L +  D  +    C K  E      S+ ++ 
Sbjct: 780 KMIRVSIKDIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSSAQNL 831


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 270/751 (35%), Positives = 436/751 (58%), Gaps = 26/751 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+ T+ E + + + L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL 
Sbjct: 2   NAKTMNEVSERKL-LAEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLK 60

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G   D  S 
Sbjct: 61  ATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSF 120

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+++ AE++L  + +  VD+ D ++    EP + P++ PN+L NG +GIAVG
Sbjct: 121 AAMRYTEARLSRYAEVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVG 180

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MA+ I  HN+ E+  A + L+DNP   +  + +YI GPDFPT   I+   E+I   Y  G
Sbjct: 181 MASDILPHNLTEVANACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
            G  ++RA +  E        IV+T +PYQV  ++++E+IA  +  K++P++ED+RDES 
Sbjct: 241 NGSIKMRAVYNQE-----KQNIVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESD 295

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   R+V+ P++  +D + LM  +F  +D+E  + +N N++ +   P+V  L  I+ EW
Sbjct: 296 HEHPTRLVIVPRSNRVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEW 355

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L +R  V+ RR  +R+  +  R+ +L+GLLIAYLNIDE+IAIIR  ++PK  +++RF+++
Sbjct: 356 LVYRISVVRRRLEYRLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQPKQGLIARFNIS 415

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AIL ++LR L KLEE +++ ELD L  E++ + ++L S ++    +  EI     
Sbjct: 416 DRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILASEQRLKKLVKEEIT---- 471

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +   + G  R +   V +  +A  ++ ++  EPITVV+S +GW+R+ K H ++   L 
Sbjct: 472 --NDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWVRAAKGHDINGCELS 529

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FK GD  K    A +  +IL   ++GK Y+LP   L S RG GE +   ++         
Sbjct: 530 FKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGALFEA 589

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH--V 661
           A   ++   +L+ S  G  FI +  ++    R GK  +K+     +     +   D   +
Sbjct: 590 AVGGEADQSVLLASDAGYGFIAKIGDLYVKNRNGKACIKLPETSHILPPRILPKHDELFI 649

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDS 714
           A      +LLI S  +IPE+SRGKG +L S        ++  + D+      + LT + +
Sbjct: 650 ACATNAGRLLICSTKEIPELSRGKGNKLISIPTAKVVSREEYVIDIQVLTADDTLT-VHA 708

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
             R +     DL  + G+RG  G+ +P+G  
Sbjct: 709 GKRHFTLKGADLEHYKGERGRRGNRLPRGLQ 739


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 258/762 (33%), Positives = 394/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTKIEMDTGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/769 (31%), Positives = 381/769 (49%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +++ YL YA+S I  RA+PD+RDG KPVHRR+I+ M + G      F K 
Sbjct: 26  RVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNGGFSKC 85

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+G  HPHGD SVYD+L RL QP+  RYPL++GQGNFG+      AA RYTE +
Sbjct: 86  MRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPRYTECK 145

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF D Y+  + EP V PS+ PNLL NG  GIAVGMAT IP HN
Sbjct: 146 MAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATRIPPHN 205

Query: 196 VQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +AA   +++PE S E+L    ++ I GPDFPTG  I+  R  I ++YR GRG   
Sbjct: 206 LREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRTGRGSIV 264

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   VEE+  G  C+V TE+PYQV    L+ KIA+L    ++  + DIRDE S     
Sbjct: 265 QRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSDRAGT 323

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  FP NM  L  G VP+ + LDG +  W+ H+  
Sbjct: 324 RLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHYWVVHQVN 382

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +   V    L    E Q
Sbjct: 383 VIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLLSVDEVQ 442

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL L+LR L  LE  +I  E   L A+      +L   ++Q   ++ E+ E+   ++
Sbjct: 443 ADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAEIANKWA 502

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                         +         + +I +E + V I+  G+         RS +     
Sbjct: 503 DERKTA--------IVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKG 554

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     +E D ++    + + D IL  +  G+ Y   A  +  G     G+ +  L+   
Sbjct: 555 VKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQ 614

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----- 649
             + I        ++    L++ + +G       ++   N   G   +K+  + +     
Sbjct: 615 PEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQ 674

Query: 650 -MKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +  V+    + + +V  + + L F+   DQ+  M R   GV    ++D    +++   +
Sbjct: 675 LVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDD--DELLTMDV 732

Query: 706 C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              G          Y +  +     +  RGG+G  V       GK + +
Sbjct: 733 VRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGA 781



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 21/224 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEG-----D 549
           +        L  +  E +   V+ + RG+++       D +      A+  +E      D
Sbjct: 614 QPEERIAQVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPD 673

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A+ A  T+ ++L+S DG++    A +    R  G +   +  +    + +++T  V
Sbjct: 674 QLVSAVLADDTEDLILVSRDGQSLRFTASD-DQLRPMGRSTSGVTGMRFRDDDELLTMDV 732

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAV 663
                 L VV+  G A   + SE     R G   K    V +  K+   +    +  V V
Sbjct: 733 VRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVANLVEARGKLVGALVTDEESEVLV 792

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +    K++   +D++ +  R  +GV     +  G   VI   + 
Sbjct: 793 IMAGGKIVRSRVDEVSKTGRNTQGVIF--SRADGDDRVIAVTLN 834



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 93/290 (32%), Gaps = 38/290 (13%)

Query: 414 KPVMVSRFSLTENQVDAILNL----RLRSLRKLE-----EYQIKSELDNL-----LAEKE 459
           +         T +  D IL      R+   +  E            + NL          
Sbjct: 561 REDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIA 620

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKA-TLQQAM 514
           ++  + +   +++  +A +   VK+     +  +   G       E    +    +   +
Sbjct: 621 QVLHISSFEDKEYLVLATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQLVSAVL 680

Query: 515 IEKEPITVVISNRGW----------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +     +++S  G           +R +   +  ++ + F++ D L           + 
Sbjct: 681 ADDTEDLILVSRDGQSLRFTASDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRPGADLF 740

Query: 565 LLSTDG--KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +++  G  K   L    +    G G  +  L+       +V A V D   ++LV+ + G 
Sbjct: 741 VVTEGGYAKRTDLSEYRVQGRGGLGIKVANLV--EARGKLVGALVTDEESEVLVIMAGGK 798

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLV---VKVTGDHVAVVGEN 667
                  E+    R   G  F +   ++++  V   V  +GD      EN
Sbjct: 799 IVRSRVDEVSKTGRNTQGVIFSRADGDDRVIAVTLNVDNSGDEEETDSEN 848


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 269/856 (31%), Positives = 417/856 (48%), Gaps = 118/856 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++   L E +    ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM
Sbjct: 1   MTDLTPLTERDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL F  +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+I
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSI 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE R+ +++E +L  +D+D VDF+D Y+  + EP+V P++FPNLL NG+ 
Sbjct: 121 DGDPPAAMRYTECRLEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +ALID+P I+++++++ I GPDFPTGGII+ S   I  
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGS-SGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE+      I+V+EIPYQ+ K+ +IEKIAEL+  KRI  + D+
Sbjct: 240 AYETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDL 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  D   V+    R    D+++  ++  + ++  F  NM  L+ G  P+ M L  IL
Sbjct: 300 RDESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALN-GGKPEQMTLLDIL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + +++ R EV+ RR+ + ++    R  +L GL IA  NIDEIIA+IR    P+       
Sbjct: 359 RAFVSFREEVVSRRTKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLM 418

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     + + L+E Q  AIL LRL+ L  L   +I  EL+
Sbjct: 419 ERRWLAVDIAPLIKLIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELN 478

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +  +      +L S  +    +  E+  ++E+F+       RRT F   S        +
Sbjct: 479 KIGVDITDYLDILASRSRIMGIVKDELNALREVFATP-----RRTVFGFGSA---DMDSE 530

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+I+          +      S +  K+ D +     A+T   +L
Sbjct: 531 DLIAPEEMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVL 590

Query: 565 LLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLV 616
             S+ G  Y      L  G     G A+  ++ L   + I T        K      ++ 
Sbjct: 591 FFSSRGIVYKEKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            + +G     + S+ +   R GK  +K     +++  V   T  D V +   N + + F 
Sbjct: 651 ATMRGTVRRNKLSDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFP 710

Query: 675 IDQIPE-MSR-GKGVRLQSYKD----------------------------------GGIS 698
           +  +   + R   GVR  +  D                                  G   
Sbjct: 711 VSDVRVFVGRHSMGVRGINMGDSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADD 770

Query: 699 DVICFKICEGLTWI-------------------DSAGRSYNRSENDLLGWLGKRGGVGSL 739
           + I     E    +                     +   Y +  +     +  RGG G  
Sbjct: 771 EDIVIGDEESEATVTELTDERYMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIR 830

Query: 740 V--PKGFPRSGKFLSS 753
              P      GK +++
Sbjct: 831 ATDPSKTAEIGKLVAA 846



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 68/210 (32%), Gaps = 28/210 (13%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
              D+    +   E + + +  +N   IR         +  HS+ +  ++  + D +   
Sbjct: 680 EEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGRHSMGVRGINMGDSDKVIS- 738

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS---- 610
               T  + +  ++  ++  +    +   R  G   + ++  +   +     + D     
Sbjct: 739 ---MTILKHVEATSTERSAYIKRV-ISERRAAGADDEDIVIGDEESEATVTELTDERYME 794

Query: 611 ----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTG-DH 660
                  LL VS  G        +   + R GK              K+     V   D 
Sbjct: 795 LSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEAQDQ 854

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           + +V +  +L+   ++ I    R  KGV +
Sbjct: 855 IMLVSDKGQLIRVPVNGIRIAGRSTKGVTI 884



 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 12/156 (7%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +  +  ++   I   I E +   +   D+                     +   E +
Sbjct: 742 LKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDEESEATVTELTDERYMELSAHEQM 801

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFK-----------EGDSLKIALHAHTTDRILLLSTD 569
            + +S  G+ +   S+   +S    K           E   L  A      D+I+L+S  
Sbjct: 802 LLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEAQDQIMLVSDK 861

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           G+   +P   +       + +  + +    + +V+ 
Sbjct: 862 GQLIRVPVNGIRIAGRSTKGVT-IFNTAKGEKVVSV 896


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 248/764 (32%), Positives = 418/764 (54%), Gaps = 33/764 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              L    V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR + AM EMG   
Sbjct: 7   QQPLFVPKVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTH 66

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSAR+VG+V+GK HPHGD S+YD++V++AQPF  R  L+ GQGNFG++DGD+ AA
Sbjct: 67  DKPYKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAA 126

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+ + AE +L  ++++ V+F   ++E   EP V P+K PNLL NG+ GIAVG+A
Sbjct: 127 MRYTEVRLKREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIA 186

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T +P HN+ E+C+A    +++P+ ++ +L++ + GPDFPTGGII+   + I  +Y  G+G
Sbjct: 187 TKMPPHNLGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIM-GTDGIQNAYLSGQG 245

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VR    ++E G+    I++TEIPYQV K++LIE IAEL+  KRI  + D+RDES +D
Sbjct: 246 KLTVRGVAEIDESGK-RNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKD 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +   P L++  ++  + +E+ F +    +   + P+++ L  ++++++ HR
Sbjct: 305 GMRIVIDLRKDARPQLILNHLYKHTALESTFGIINYAIVDRQ-PKILGLIPLIEQFVRHR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTE 425
             V+ RRS F  +  + RV IL+GLL A  NID +I  I   +  D+ K  ++++FSL E
Sbjct: 364 ITVITRRSEFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAKFSLDE 423

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL ++LR L  LE+ ++  E + L AE  K+  LL+S      +I+ E++E++E 
Sbjct: 424 AQAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSEDNIRAEISRELQELREK 483

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           ++       RRT   +++   +  +++ +I  + + V ++++ +++ +   +  +     
Sbjct: 484 YADK-----RRT---QITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDAYRVQGRGG 535

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                +  K+GD ++    A+T D +L  ++ G+AY L   ++   S +  G+AI  L+D
Sbjct: 536 RGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKGKAIVNLLD 595

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L   + +        + S    L ++ +G    + + E       G   + +   + +  
Sbjct: 596 LRSEERVTAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRSTGVNAISLREGDNLVH 655

Query: 653 VVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGL 709
           V+   G    ++     + L F  +QIP   R   GV     KD  I  V     I EG 
Sbjct: 656 VMVSDGSQEIIITTKYGQSLRFHEEQIPLRHRNALGVIGMRMKDDDI--VTSMTVIEEGK 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +      Y +  N        RG +G    K   R+   +++
Sbjct: 714 HLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIK-LKRNDGIVTA 756



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 68/179 (37%), Gaps = 6/179 (3%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  ++A+  +EGD+L   + +  +  I++ +  G++       +     +   +  +
Sbjct: 636 RPRSTGVNAISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHEEQIPLRHRNALGVIGM 695

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMK 651
             +  +  + +  V +    LL ++S G        E   + R   G   +K+   + + 
Sbjct: 696 -RMKDDDIVTSMTVIEEGKHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLKRNDGIV 754

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
                   + + ++     ++  S+++I    R  +GVR+     G  +  V      E
Sbjct: 755 TAFSAGPEEEIILMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEE 813


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 241/785 (30%), Positives = 404/785 (51%), Gaps = 45/785 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  + +++   + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQMTDVRHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPSSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       + +PE + E+LLE     I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R+ I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 RKGIEDAYRTGRGSITQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDG-VPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D
Sbjct: 358 LSIDGFIRHWITHQIDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    +   Q DAIL L+LR L  LE  +I  E   L A  + ++ +L + ++Q
Sbjct: 418 EARVGLIDLLDVDAVQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILATPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I+ E+ E+ + F        RRT        D     + +I +E + V I+  G+  
Sbjct: 478 RAIISAELSEIVDKFGDE-----RRTRIL---PFDGEMSMEDLIPEEDVVVTITRDGFAK 529

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  RS K     +     ++ D ++      T   +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADYLVLATKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRL 689
              + +  +     +++     +   + + +V  + + + F+   +Q+  M R   GVR 
Sbjct: 650 IIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRFTATDEQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++  G  +++  ++  EG   +      Y +           RG +G  V K     G
Sbjct: 710 MKFR--GDDELLSMEVPHEGTDLLIVTESGYAKRTPVEEYPTKSRGTLGVRVGKLVDERG 767

Query: 749 KFLSS 753
             + +
Sbjct: 768 GLVGA 772



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 19/220 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEG-----D 549
           +        L     E     V+ + RG ++           S  + A++ +E      D
Sbjct: 605 QPDEHIAQVLAIRTYEDADYLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKAD 664

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A      + ++L+S DG+A    A +    R  G +   +  +    + ++++  V
Sbjct: 665 ELVSAQIIMADEDLILVSRDGQAVRFTATD-EQLRSMGRSTSGVRGMKFRGDDELLSMEV 723

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV-SSEEKMKLVVKVTGD-HVAV 663
                 LL+V+  G A      E    +R   G    K+      +   + V  D  V V
Sbjct: 724 PHEGTDLLIVTESGYAKRTPVEEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMV 783

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           + E+ KL+  +   +   +R   GV      DG     I 
Sbjct: 784 ITESGKLVQVNASDVRPTARNTMGVIFARPDDGDRIIAIT 823


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 242/792 (30%), Positives = 395/792 (49%), Gaps = 64/792 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NP++S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V  F 
Sbjct: 360 DFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEDELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ +   + +   
Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++  G       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFREDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGI---SDVIC 702
           ++ V      D + +       + F  D  Q+  + R  +GV+    K G      DV+ 
Sbjct: 652 LRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDVLP 711

Query: 703 FKICEGLT--------------------------WIDSAGRSYNRSENDLLGWLGKRGGV 736
            ++  G+                            +      Y +        L +R G+
Sbjct: 712 AQVTAGIGDAAEDEDVLENETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGM 771

Query: 737 GSLVPKGFPRSG 748
           G    K   ++ 
Sbjct: 772 GVRAIKFKSKTD 783



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 44/236 (18%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +  +   ++   V+++  G+I+           +  L A+   +GD L+ 
Sbjct: 595 IPKDEKITSIVAVSEFREDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-------- 602
                  D I+L +  G A    A N      GR     ++ +     ++ I        
Sbjct: 655 VRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRAT-RGVKAMKLKKGDELISMDVLPAQ 713

Query: 603 VTAFVYDSTCK---------------------LLVVSSKGNAFIVEESEIIANTRKG--K 639
           VTA + D+                        +L +++ G    V  S+     R G   
Sbjct: 714 VTAGIGDAAEDEDVLENETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGV 773

Query: 640 TFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
             +K  S+      + V    D + +V     ++  ++D I   SR   GVR+Q  
Sbjct: 774 RAIKFKSKTDCLASLHVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRL 829


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 421/767 (54%), Gaps = 37/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +  G     G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKI 705
             +  V   ++ +     + + F +++  +  R  +GVR   +K        +DVI  + 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E LT    + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTV---SEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 653 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 710 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A    + D+ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  ++   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVISMKLSTKTGN--VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/834 (31%), Positives = 402/834 (48%), Gaps = 120/834 (14%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D V+F+D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP I + +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +    
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R    D++
Sbjct: 240 EAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+ F +     
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------------- 419
           R  +L GL IA  NIDE+IA+IR    P                                
Sbjct: 359 RAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLN 418

Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E      +L S  +  N + 
Sbjct: 419 EDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  V++ F+       RRT   E+         + +I +E + V +S+ G+I+     
Sbjct: 479 EEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                +      S +  KE D +     A+T   +L  S+ G  Y      L  G     
Sbjct: 531 TYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     + S+ +   R GK 
Sbjct: 591 GKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKI 650

Query: 641 FLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +     + + F +  +     R   GVR  +  +G 
Sbjct: 651 AMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEG- 709

Query: 697 ISDVICFKI-----------------------------CEGLTWI--------------- 712
              VI   I                              + +  +               
Sbjct: 710 -DKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRY 768

Query: 713 -----------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
                        +   Y +  +     +  RGG G        ++   GK ++
Sbjct: 769 QELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT-DTSKTDEIGKLVA 821



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 696 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 750

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 751 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATD 809

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 810 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 867

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 868 KVVSVERISDADSDEENGNG 887


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 391/765 (51%), Gaps = 36/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+AM + G      F 
Sbjct: 20  HDKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFS 79

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K  R++G+V+G+ HPHGD SVYD+LVRL QP+  RYPL  GQGNFG+   D AAA+RYTE
Sbjct: 80  KCTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTE 139

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +M  +A  +++ ++ED V+F+D Y+    EP V PS+FPNLL NG+ GIAVGMAT+IP 
Sbjct: 140 TKMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPP 199

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           HN++E+ E AL  + NPE + E+L+E     I GPDFPTG  I+   + I ++YR GRG 
Sbjct: 200 HNLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQIL-GVKGIQDAYRTGRGS 258

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAED 308
             +RA   VEE+ +G  C+VVTE+PYQV    L  KIA+L+   ++  + DIRDE S   
Sbjct: 259 VTMRAVVSVEEL-QGRTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRT 317

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            + ++    R     +++ +++  + ++  F  NM  +  G +P+ + +DG +  W  H+
Sbjct: 318 GQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLSIDGFITAWATHQ 376

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR     +  +  +++   + E
Sbjct: 377 IEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDARTGLIALLEIDE 436

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++LR L  LE  +I  E + +  E  +  +++ S ++Q + ++ E+ E+   
Sbjct: 437 IQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAIIASEQRQRDIVSEELTELLAK 496

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           +        RRT    +   D     + +I +E + V ++  G+++              
Sbjct: 497 YGD-----DRRTEI--MLGFDGDMSMEDLIPEEEMVVTVTRGGYVKRTRSDNYRSQHRGG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
             +     +  D +       T   +L  +  G+ Y   A  L  G     G+ +   + 
Sbjct: 550 KGVKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEGGRDAKGQHVANFLA 609

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L   ++I        Y++   L++ +  G       SE   N   G   + +   +++  
Sbjct: 610 LQPGEEIAQILDIRDYETATYLVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVS 669

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            + V   D V +V      + F+     +  M R   GV   S+++             G
Sbjct: 670 AMLVENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVPDSG 729

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             ++ + G  + +  +     +  RGG+G  V K     G    +
Sbjct: 730 YVFVVTEG-GFAKRTSADQYRVQGRGGLGIKVAKLDGARGDLAGA 773



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 13/174 (7%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ ++ G ++       D +      A++ +EGD L  A+    TD +LL+S  G +   
Sbjct: 632 VLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIRF 691

Query: 576 PAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            A +  + R  G +   ++      +  +++A V   +  + VV+  G A      +   
Sbjct: 692 TASD-EALRPMGRSTSGVMGMSFREDDRLLSASVVPDSGYVFVVTEGGFAKRTSADQYRV 750

Query: 634 NTRKGKTF--LKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             R G      K+     +    ++    D V VV  + K++  S+ ++P   R
Sbjct: 751 QGRGGLGIKVAKLDGARGDLAGALMVGDHDEVLVVLASGKVVRSSVAEVPAKGR 804



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 12/212 (5%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E  +I  + +     +  +A     VK+      D  R         R     +   ++
Sbjct: 614 EEIAQILDIRDYETATYLVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAMLV 673

Query: 516 EKEPITVVISNRG----------WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           E     +++S +G           +R +   +  +  + F+E D L  A     +  + +
Sbjct: 674 ENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVPDSGYVFV 733

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           ++  G A    A         G  I++        D+  A +     ++LVV + G    
Sbjct: 734 VTEGGFAKRTSADQYRVQGRGGLGIKVAKLDGARGDLAGALMVGDHDEVLVVLASGKVVR 793

Query: 626 VEESEIIANTRK--GKTFLKVSSEEKMKLVVK 655
              +E+ A  R   G  F + ++E+K+  + +
Sbjct: 794 SSVAEVPAKGRDTMGVVFARFAAEDKIIAIAR 825


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 421/767 (54%), Gaps = 37/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +  G     G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKI 705
             +  V   ++ +     + + F +++  +  R  +GVR   +K        +DVI  + 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E LT    + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTV---SEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 653 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 710 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A    + D+ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  ++   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVISMKLSTKTGN--VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 413/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+  
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    + +G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 85/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A     +D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTSGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/746 (36%), Positives = 434/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N +  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NIINYEGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAA 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ ++A+++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EAA+ LIDNP+ S++ LL  + GPD+PT   I+ S+E I + Y  GRG
Sbjct: 182 TDIPPHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       I++T +P+Q   S++I +IAE + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKED-----GEIIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRIVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR  +R+  +  R+ IL+GLLIAYLNIDE+I +IR+ED+PK  ++ RF L+E 
Sbjct: 357 FRRTTVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAALIDRFGLSET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E D L  E++ +  +L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEENELQAEKDRLEEERDSLQLILGSERRLNTLIKKEIQQDAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +        KA  +  M   EP+TV++S  GW+R  K H +D+  L +K
Sbjct: 477 ASP------RLSPLVQRAEAKAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L   +L S R  GE +   + L     +    
Sbjct: 531 AGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLSLPAGASVEHVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
           +      LL+ S  G  FI +  ++IA  + GK  + +    K+   +++  ++  +  +
Sbjct: 591 MEQDKQALLMASDAGYGFICQFDDLIARNKAGKALISLPENAKVLTPLRIDNENARLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI-DSAGRS 718
               ++LIF +  +P +++GKG ++ +             V  F I E  + +  +  R 
Sbjct: 651 TSAGRMLIFPVKDLPSLAKGKGNKIVTIPAAHAKARTELLVRLFLINEQTSLVFHAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D   +  +RG  G+ +P+G 
Sbjct: 711 ITLKPEDWQKFSAERGRKGTQLPRGL 736


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 254/767 (33%), Positives = 421/767 (54%), Gaps = 37/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +  G     G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKI 705
             +  V   ++ +     + + F +++  +  R  +GVR   +K        +DVI  + 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E LT    + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTV---SEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 653 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 710 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A    + D+ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  ++   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVISMKLSTKTGN--VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 255/828 (30%), Positives = 398/828 (48%), Gaps = 110/828 (13%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ YL YA+S I  RA+PD RDG KPVHRRI+++M+E G      + KSAR+VG+VIGK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQS+YD++VR+AQ F  R PLI GQGNFG++DGD  AAYRYTEAR+T+ A  +L 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF+  Y+  ++EP V P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +A +A
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LIDNP ++I++L+  + GPDFPTGG+I+  R  I  +Y LGRG   +R +  +E + +  
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIRAAYHLGRGSIVMRGKVAIETIRKER 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +++TEIPYQV K+ ++E+IAEL+  K+I  + D+RDES  D   V+    R    D++
Sbjct: 240 EALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F +NM  L     P++M L  +L  ++  R  V+ RR+ F +     
Sbjct: 300 LNQLYRFTPLQTSFGVNMVAL-DSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------------------KPV 416
           R  IL GL IA  NIDE+I +IR    P                             +  
Sbjct: 359 RAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRIS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+  Q  AIL+LRL+ L  L   +I+ ELD L  E      +L S ++    I 
Sbjct: 419 PDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  F+       RRT   E    +     + +I++E + V +S+ G+++     
Sbjct: 479 TELAEVKAEFATP-----RRTVIME---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                +      + +  ++ D +     A T   +L  S+ G+ Y      L        
Sbjct: 531 AYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNAR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  ++ GN    + S+ +   R G  
Sbjct: 591 GKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGII 650

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKD-GG 696
            +K+   E +  V   T  D V + G   + + F +  +     R   GVR  +  +   
Sbjct: 651 AMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDK 710

Query: 697 ISDVICFKICEGLT---------------------------------------------- 710
           +  +   +  E  +                                              
Sbjct: 711 VISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMS 770

Query: 711 -----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 +  +   Y +  +        RGG G +      R+G  ++S
Sbjct: 771 AAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVAS 818



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L VS  G        E     R GK  + +S   +   +     V   D + +V 
Sbjct: 772 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVT 831

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  +L+   ++ I    R                VI F   E    +  
Sbjct: 832 DKGQLIRCPVEGIRIAGRST------------QGVIVFDTAEDEHVVSV 868


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 280/728 (38%), Positives = 439/728 (60%), Gaps = 23/728 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ ++++L+ V +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSDVLLREVSQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP V P++ PNLL NGT+GIAVGMAT +P HN+ E+  A + L++NP   
Sbjct: 121 WVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSD 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ L+ ++ GPD+PTGG I   R  I + Y  G+G  + RAR+ +EE       IV+ E+
Sbjct: 181 LDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEEGD-----IVIKEL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+    S+++E+IA  + AK++P++ D+RDES  +   R+VL PK+  +D + +M  +F 
Sbjct: 236 PHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMNV+ +  +P V  L   L EWL  R +V+ +R  FR+  +  R+ IL+
Sbjct: 296 STDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL+A+LNIDE+I IIRNE+KPK  ++ RF LT+ Q +AIL L+LR L KLEE +IK E 
Sbjct: 356 GLLVAFLNIDEVIEIIRNEEKPKVELMLRFGLTDIQAEAILELKLRHLAKLEEMRIKGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++++LL S ++    I+ EI+E  +          RRT   E     +A  +
Sbjct: 416 DELEKERKQLEALLGSDRKLKKLISEEIQEAVDAHGDE-----RRTPIVERKE-SQAFSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + ++  +P+TVVIS +GWIRS K H VD  AL++K GD   I+    +   ++LL+++G+
Sbjct: 470 EDLLSNDPVTVVISKQGWIRSAKGHDVDPLALNYKSGDEFSISCKGRSNQTLVLLASNGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y++ A  L S RG GE I   I L  +  IV A +       L+ S  G  FI +  ++
Sbjct: 530 SYSIKAHTLPSARGQGEPITGRISLEKDVTIVAAMLNADNTFYLIASDAGYGFIAKLGDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVR 688
            A  + GK  L + +  K+   + V+     H+ V     ++L F  D +P+M++GKG +
Sbjct: 590 HAKNKAGKATLTLPTSAKVLTPISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNK 649

Query: 689 LQSYKDGGISD----VICFK--ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           + S +    +     V+     + + L    S  R  + ++ DL  +LG+RG  G  +P+
Sbjct: 650 MISIQASRAASHEEYVVAMASVLADDLLQAHSGKRFMSFTQKDLNEYLGERGRRGLKLPR 709

Query: 743 GFPRSGKF 750
           GF R    
Sbjct: 710 GFQRVDAL 717


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 236/786 (30%), Positives = 395/786 (50%), Gaps = 54/786 (6%)

Query: 9   SNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++T +E + ++ V L+  ++  Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G  
Sbjct: 2   TDTPIERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGGYR 61

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F K +RI+G+V+G+ HPHGD ++YD+LVRLAQP+V R P+ISGQGNFG+   D AA
Sbjct: 62  PDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDPAA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE ++  VA  +++ +DE+ VDF+  Y+   SEP V PS+ PNLL NG++GIAVGM
Sbjct: 122 AMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN++E+ E A   + +PE +  +    LLE I GPDFPT G+IV     I + Y
Sbjct: 182 ATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIV-GTSGIEDMY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG   +RA   +EE  +G   +VVTE+PYQV    L+ KIA+L+   R+  + D+RD
Sbjct: 241 RTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDLRD 300

Query: 304 E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E S+   R ++    R     +++ +++  +D+++ F  NM  L    VP+ + LDG + 
Sbjct: 301 ESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDD-VPRTLTLDGFIT 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            W+ H+ +V+ RR+ +R++  + R  I +GL  A   +D++IA+IR     D+ +  ++ 
Sbjct: 360 NWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEARTGLIE 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q +AIL ++LR L  LE  +I  EL  L         +L   ++Q   ++ E+
Sbjct: 420 LLEIDEIQANAILEMQLRRLAALERQKILDELAELERMIADFTDILERPERQREIVSTEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IR 531
            E+ + +        RR+       AD     + +I  E + V I++ G+         R
Sbjct: 480 AEIVDKYGD-----DRRSRII---PADGDLSDEDLIPDEEVVVTITSGGYAKRTKTDLYR 531

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589
                   +     ++GD ++          IL  +T G+ Y   A +L        G  
Sbjct: 532 VQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHLPEAGRDAKGGH 591

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-S 645
           +  L+    ++ I        Y+    L++ + KG       ++  +  + G   +    
Sbjct: 592 VAGLLSFQPDEQIAQVLAVRDYEQAPYLVLATRKGLVKKTRLTDYNSPRQAGVIAINFRD 651

Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVI 701
            ++++     V   D + ++    + + F  D   +  M R   GV    ++  G  D++
Sbjct: 652 DDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQLRPMGRATSGVTGMKFR--GEDDLL 709

Query: 702 CFKI---------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              +                + L         + +        L  RGG+G    +    
Sbjct: 710 SMTVIRREHAALDAEEVADEDKLYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQITGA 769

Query: 747 SGKFLS 752
            G+ + 
Sbjct: 770 RGELVG 775



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 515 IEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGD-SLKIALHAHTTDRILLLS 567
            E+ P  V+ + +G ++  +           + A++F++ D  L  A      D +LL+S
Sbjct: 613 YEQAPYLVLATRKGLVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAELVGPDDDLLLIS 672

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY--------------DST 611
              +A    A +    R  G A   +  +      D+++  V               +  
Sbjct: 673 RKAQAIRFRADD-EQLRPMGRATSGVTGMKFRGEDDLLSMTVIRREHAALDAEEVADEDK 731

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGEN 667
             +  V+  G A      E     R G       +  +  E +  +V    D V  V   
Sbjct: 732 LYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQITGARGELVGGLVLKDTDDVISVTSG 791

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++    +  +    RG  GV    +K G    V   +  E
Sbjct: 792 GQVTRSLVSGVNPTGRGTMGVSFVKFK-GDDRVVTIARNAE 831


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 258/762 (33%), Positives = 394/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTRIEMDAGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 412/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+  
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I+          +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  ++              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEVSDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 84/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEVSDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GV+L +  +G
Sbjct: 874 AGVKLINLDEG 884


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 413/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   ++E YL Y++S I  RA+PD+RDG KPVHRRI+ AMSE+G+ +  A+KKS
Sbjct: 3   NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +++  ++  +D++ +DFR  +++   EP V P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDNPE++   L+EYI GPDFPTGGI ++ ++ I ++Y  GRG  RVR +
Sbjct: 183 LGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGI-IDGQKGIRDAYMTGRGKVRVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I++ EIPYQ+ KS LIE+IA+L+  KR+  + D+RDES      V+  
Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  ++++  F + M  L     P+V+ L  IL E++ HR EV+ RR
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNA-PRVLNLKEILHEYIKHRFEVVTRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+G  IA  NID II IIR        + +++ +++ ++ Q  AIL
Sbjct: 361 TKFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E + +     ++  +L+   + +  I  E+  +KE ++     
Sbjct: 421 DMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R T  E  R +   L + +I+ E + + ++N+G+++          K     +++ +
Sbjct: 477 --NRRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D ++    A   D +++ +  G+ + +    +   S +  G+ +  +I    ++ I
Sbjct: 533 TIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRTREDEKI 592

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKV 656
                   +    +++ V+ +G        E       G   +K+  E+ +  V    K+
Sbjct: 593 RAVIKTRDFSKENEVVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEEDDIIYVGLIEKI 652

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V +  +    + F+ D +    R   GV+  + + G           E  + +   
Sbjct: 653 DQEQVFIATKQGYSIRFNSDNVRPTGRDTMGVKSITLRPGDSIVSALLIKDEEGSILTVT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +        L  R G G +  +   ++G  +S
Sbjct: 713 ENGYGKRTRIDEYPLQARSGKGVINIRCNAKTGAVVS 749



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/446 (15%), Positives = 135/446 (30%), Gaps = 49/446 (10%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNM 343
           +IA   I + I ++    D +     ++       +    +++  +  L+ +E       
Sbjct: 379 RIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAILDMKLQRLTGLE------- 431

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                 R       + I K     R  +      + +   +      K        I+  
Sbjct: 432 ------RGKIDAEYEEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDNRRTLIENE 485

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE--------YQIKSELDNLL 455
              I  ED  K   V    LT      +  + +   +  +           I+ +    +
Sbjct: 486 RMEILPEDLIKDENV---ILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTIEDDFVESI 542

Query: 456 AEKEKIDS--LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                +D+  +  +  + +N    EI E  +           RT   E  R   A ++  
Sbjct: 543 ESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRTREDEKIR---AVIKTR 599

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
              KE   V ++  G I+              L A+  KE D +         D+  +  
Sbjct: 600 DFSKENEVVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKEEDDIIYVGLIEKIDQEQVFI 659

Query: 568 TDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNA 623
              + Y++   +     +GR     ++  I L     IV+A +  D    +L V+  G  
Sbjct: 660 ATKQGYSIRFNSDNVRPTGRDT-MGVKS-ITLRPGDSIVSALLIKDEEGSILTVTENGYG 717

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIP 679
                 E     R GK  + +    K   VV       G+ +  +  +  ++   +D I 
Sbjct: 718 KRTRIDEYPLQARSGKGVINIRCNAKTGAVVSVLPVTEGEELMAITSSGIVIRMPLDTIA 777

Query: 680 EMSRGK-GVRLQSYKDGGISDVICFK 704
              R   GV +      G   V+   
Sbjct: 778 LYGRATQGVIIMKV--DGAEKVVSIT 801


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 413/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+  
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    + +G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 86/251 (34%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A     +D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTSGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++    KL+   +++I E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 272/755 (36%), Positives = 412/755 (54%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL     FKKS
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTEA+
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ ++++ VDF   Y+E   EP V P+  P LL NG SGIAVGMAT+IP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A+IDNPEI  + LL Y+ GPDFPTGGII   ++ I  +Y  G+GG  VRAR
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V KS L+E++A L+  K+I  + +IRDES  +   ++F 
Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R + P +++  +F ++ ++T F +N   L  G  PQ + L  I++ +++HR+EV+ RR
Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALV-GGKPQTLTLKEIIQHFISHRKEVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL IA  NIDE+IAII+     D  +  ++ RF L+E Q  AIL
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  EL+  L   E++  LL S ++    +  E  E+ + +      
Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDE--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------ 546
             RRT        D     + +I+KE + V++S  G I+ +   +        K      
Sbjct: 482 --RRTEIVAEEAEDLDI--EDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD- 601
               D +     A T D IL LS +GKAY L    +  G     G++I+ L+ L+ ++  
Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQV 597

Query: 602 --IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +V+   ++   ++ ++++KG A  +    +     +G   + +   + +       G 
Sbjct: 598 SAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKGDYLVDAFLTEGK 657

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +V      L    ++   M R  +GV     + G         + EG   +     
Sbjct: 658 GEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGD-EVCGAVPVEEGKDLLLVTSG 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +           RG  G +V K   R+G+  +
Sbjct: 717 GYGKRVGFSQFTAHGRGTKGQIVYKVSARTGELAA 751



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 12/210 (5%)

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEG 548
           R            A +     E+E    +I+ +G  + L       + +  + A+  ++G
Sbjct: 586 RSLVQLSPDEQVSAVVSVETFEEEREVFMITAKGLAKRLPVPALSNARTRGVIAIGLEKG 645

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D L  A        +++++  G           S       +   + L    ++  A   
Sbjct: 646 DYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTA-VKLEPGDEVCGAVPV 704

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTG-DHVAVV 664
           +    LL+V+S G    V  S+  A+ R  KG+   KVS+   ++  V+ V   D V +V
Sbjct: 705 EEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSARTGELAAVLSVEAKDDVMIV 764

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                ++  ++  I  + R   GV++ + +
Sbjct: 765 TAQGNIIKLAVKDISVLGRQAAGVKVVNLE 794



 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
           R R             +   + E +   ++++ RG          RS+   +  ++A+  
Sbjct: 633 RTRGVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKL 692

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A+       +LL+++ G    +      + GRG    I   +     + +  
Sbjct: 693 EPGDEVCGAVPVEEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSARTGE-LAA 751

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVT 657
               ++   +++V+++GN   +   +I    R   G   + +   + +  V +V 
Sbjct: 752 VLSVEAKDDVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVA 806


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/757 (34%), Positives = 419/757 (55%), Gaps = 30/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   ++++LE+IIGPDFPTGGI +  +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGI-IYGKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KHKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L  +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKE-PKIFTLLELLHLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   E+++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIEELNGILKSEDRLNGVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + +    + +I  EP+ V +S +G+++ +     +      K     
Sbjct: 485 ---RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYERQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++ 
Sbjct: 539 STYEDDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEANRIAMGKAIVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKV 656
           I+       +     L   +  G       SE  +N   G   + +  ++++    +V  
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEDDELVSAKIVDK 658

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              H+ +   +   + F ++ + EM R   GVR     +            +    +  +
Sbjct: 659 NAKHLLIASHSGTFIKFPLENVREMGRSTHGVRGIKLNENDFVVSAVVISDDSNKLLSVS 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +           RGG G +  K   ++G  +S
Sbjct: 719 ENGLGKQTLAEAYREQARGGKGVIGMKLNKKTGNLVS 755



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 13/209 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIAL 555
                 ATL       E      +  G ++              + A+   E D L  A 
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEDDELVSAK 654

Query: 556 HAHTTDRILLLST-DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + LL+++  G     P  N+         ++ +    ++  +    + D + KL
Sbjct: 655 IVDKNAKHLLIASHSGTFIKFPLENVREMGRSTHGVRGIKLNENDFVVSAVVISDDSNKL 714

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRK 669
           L VS  G              R GK  + +   +K   +  V+ V  +   + ++  + K
Sbjct: 715 LSVSENGLGKQTLAEAYREQARGGKGVIGMKLNKKTGNLVSVISVDDENLDLMILTASAK 774

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           ++  SI  I E  R   GV+L    D  +
Sbjct: 775 MIRVSIKDIRETGRNASGVKLIDTADKVV 803


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/767 (32%), Positives = 420/767 (54%), Gaps = 37/767 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V++  +++  YL Y++S I  RA+PD +DG KPVHRRI++AM ++ +  
Sbjct: 2   ENLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDGD+AAA
Sbjct: 62  KSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT++AE +L+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMA
Sbjct: 122 MRYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG
Sbjct: 182 TKIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA+  +E   +    IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +
Sbjct: 241 RVRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ +++  + MET F + + +    + P+V  L  IL  +L+HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  +  RF L+ 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKRFDLSA 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  L+  ++++E   L+    +++++L S ++    I  E+ E+KE 
Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           FS             E+  +      + +I  EP+ V I++ G+++          K   
Sbjct: 479 FSNDRK--------TEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +  G     G+A+  LI+
Sbjct: 531 KGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       ++ +  L+  +  G       +E       G   + +   +++  
Sbjct: 591 LRPDEKIMEIIPTPDFEESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 650

Query: 653 --VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKI 705
             +  V   ++ +     + + F +++  +  R  +GVR   +K        +DVI  + 
Sbjct: 651 AKIADVETQYIMIFTSLGQCIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSED 710

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            E LT    + +   +        L  R G G +  K   ++G  + 
Sbjct: 711 QEILTV---SEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIG 754



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 21/232 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     E+    V  +  G I+    +         + A+   + D +  A 
Sbjct: 593 PDEKIMEIIPTPDFEESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 652

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 653 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 710 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 769

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVICFKICEGLTWIDSA 715
             K++   ++ I +  R   GV + +    D  +S   C K  E +   ++ 
Sbjct: 770 IGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDENG 821



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGH 586
           R     +  +  + FK + D +  A    + D+ +L  ++   GK  T+    L +  G 
Sbjct: 679 RDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTVSEKGIGKRTTVEEYRLTNRAGS 738

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G     L     N  ++   + D T  L++++S G    V+ + I    R   G   + V
Sbjct: 739 GVISMKLSTKTGN--VIGEVLVDDTQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNV 796

Query: 645 SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
            S +K+  + K    D    + EN  ++ ++ D
Sbjct: 797 DSNDKVVSIAKCPKEDEEIELDENGNVIRYNED 829


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/754 (37%), Positives = 443/754 (58%), Gaps = 23/754 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N  +  +V+   L    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL  G
Sbjct: 2   NISMNPDVEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAG 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI+GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   AEL+L  V +  V++   ++    EP + P++ P++L NGT GIAVGMA
Sbjct: 122 MRYTEARLAPFAELLLSEVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  A L L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G
Sbjct: 182 TDIPPHNLHEVTAACLHLLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA++ VE+       IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +
Sbjct: 242 SVRLRAQYMVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+VL P  R +D + +M  +F  +D+E  + +N+NV+ +   PQV  L  +L EW  
Sbjct: 297 NPTRLVLVPYARRMDVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFY 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R E L RR  +R++ ++ R+++L GLLIAYLNIDE+IAIIR+E+ PKPV+++RF L++ 
Sbjct: 357 FRIETLRRRFRYRLEKVEDRLQVLAGLLIAYLNIDEVIAIIRDEEAPKPVLMARFKLSDR 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +I++E   L AE++ ++ +L S  +  + +  E+    + F
Sbjct: 417 QAEAILELKLRYLARLEETKIRAENKALAAERKGLEKMLGSESRIKDLLRQELLADAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
             +     RR+   E S       +Q+++  E ITVV+S +GW+R+ KS  V+ +AL ++
Sbjct: 477 GDA-----RRSPIVERSS-ATVLDKQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS + +    +    + L + G++YTLPA  L S RG GE +   + +    + +   
Sbjct: 531 TGDSYRASARGRSNQSAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFIAIL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663
           + +     L+ S+ G  F+ +   +    R GK  L VS+  K    V VT    D VAV
Sbjct: 591 LAEPEEFYLMASNAGYGFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVTDRELDQVAV 650

Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDSAGR 717
                +LL+F +  +P ++RGKGV+L +     ++        +      G   + +  R
Sbjct: 651 ATNVGRLLLFPLRDLPFIARGKGVKLINISSTRLAQGQEAVRALAVVSQGGALQVFAGRR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                  DL  + G+R   G  +P+GF +  + +
Sbjct: 711 HLTLKSEDLEPYQGERARRGLTLPRGFQQVERMV 744


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/825 (31%), Positives = 384/825 (46%), Gaps = 99/825 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  +   V+  
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R EV+ RR
Sbjct: 340 LKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFREEVITRR 398

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           S + +     R  +L G++IA  N+DE++ IIRN   P                      
Sbjct: 399 SKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIK 458

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L +
Sbjct: 459 LIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRN 518

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++ +  +  E   V+  F+       RRT     S    A   + +IE+E + V +++ 
Sbjct: 519 RERLYEIMVEEFDAVEAQFATP-----RRTQIVAASD---AIEDEDLIEREEMVVTVTHG 570

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                 S +  K+ D++       T   +L  S  GK Y L    
Sbjct: 571 GYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWR 630

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G  +  G  +  L+ L   + + T               +L  ++KG+         
Sbjct: 631 LPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAF 690

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE-MSRG-KG 686
                 GK  ++    +  +L+        D V +   N K + F+   +    SR   G
Sbjct: 691 TNVPSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTG 750

Query: 687 VRLQSYKDGGISDVICFKICEGLT------------------------------------ 710
           VR  + KDG   +VI      G                                      
Sbjct: 751 VRGITLKDG--DEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAFEEAE 808

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 809 DFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 34/236 (14%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-SLKSHSVDLSAL 543
            F+   D G           ++   +  A    + I    ++   +R      S  +  +
Sbjct: 698 KFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATD---VRVFQSRTSTGVRGI 754

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             K+GD +       T         D   Y      L S     +     +        +
Sbjct: 755 TLKDGDEVISL---STLRGFETTVEDRDKY------LRSAAWKTDPAPAELPPEK----I 801

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGD 659
            AF  ++   +L V++ G        E   + R G+    + + E+   VV       GD
Sbjct: 802 KAF-EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVASFPAHDGD 860

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            + +V +  KL+  +++ I    R                V  F + EG   + +A
Sbjct: 861 QLMLVTDQAKLIRTTVNDIRIAGRNT------------QGVTIFNVAEGEQVVSAA 904


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/756 (34%), Positives = 398/756 (52%), Gaps = 61/756 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G  +   + KS
Sbjct: 16  GIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAAHESGYHWNRKYVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTEAR
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+ +D+D VDF+DTY+   SEP V P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 136 LTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R R
Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGR 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+ G     I++TE+PYQV KS +IEK+AEL+  KRI  + DIRDES      V+  
Sbjct: 255 VNIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ G  P+VM L  +LK ++A R EV+ RR
Sbjct: 315 LKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLTDMLKAFVAFREEVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 374 TKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLIL 433

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+ + AE      +L+
Sbjct: 434 LIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I++E + V +S+
Sbjct: 494 SRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGSDMEDEDLIQREDMVVTVSH 545

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  KE D +     A+T   +L  S+ G  Y     
Sbjct: 546 SGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G  +  G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 606 RLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDLSD 665

Query: 631 IIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
            +   R GK  +K+    +++  V   T  D V +   + + + FS+  +    SR   G
Sbjct: 666 FVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQSRNSVG 725

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           VR  +  +     +I   + E +    +   +Y + 
Sbjct: 726 VRGITMAE--TDRIISMSVIEHVDASPAERAAYLKR 759



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV----TGDHVAVV 664
              +L V+  G        +     R  KG     VS   ++  +V        D + +V
Sbjct: 802 EQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGNDDQIMLV 861

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   ++   ++ I   SR  KGV + +  +G
Sbjct: 862 SDGGTVIRVPVNGIRFASRATKGVTIFNTAEG 893


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 276/746 (36%), Positives = 438/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++   LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ EI +AA+ LIDNP+ +++ LL  + GPD+PT   I+ S++ I + Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       IV+T +P+Q   S++I +IA+ + AK++P++EDIRDE+  +
Sbjct: 242 SVRMRAVWKKED-----GEIVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +RIV+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 SPIRIVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQ 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  + RR   R+  +  R+ IL GL+IAYLNIDE+I IIRNED+PK V+++RF+LT+ 
Sbjct: 357 FRRTTVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEPKQVLIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE+++++E D L  E++ +   L S ++    I  EI++  + +
Sbjct: 417 QAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSLQLTLGSERRLNGLIKKEIQQDAKTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +        KA  +  M   EP+TV++S  GW+R  K H +D+  + +K
Sbjct: 477 TSP------RLSPLVERAEAKAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNISYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD      +  +    + + + G++Y L    L S R  GE +   + L     +    
Sbjct: 531 AGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGASVEQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           +      LL+ S  G  FI +  +++A  + GK  + +    ++   +K+T +   +V  
Sbjct: 591 IETENQPLLMASDAGYGFICKFEDLVARNKAGKALISLPENARVLPPLKLTNETALLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRS 718
               ++LIF    +P +++GKG ++ +      KD     V    I E  T +  S  R 
Sbjct: 651 TSAGRMLIFPAKDLPSLAKGKGNKIVTIPAVNAKDRSELLVRLLLIEESSTLVFHSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 +L  +  +RG  G+ +P+G 
Sbjct: 711 VTLKPEELQKFRAERGRKGTQLPRGL 736


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/825 (31%), Positives = 384/825 (46%), Gaps = 99/825 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  +   V+  
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R EV+ RR
Sbjct: 340 LKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFREEVITRR 398

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           S + +     R  +L G++IA  N+DE++ IIRN   P                      
Sbjct: 399 SKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIK 458

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L +
Sbjct: 459 LIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRN 518

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++ +  +  E   V+  F+       RRT     S    A   + +IE+E + V +++ 
Sbjct: 519 RERLYEIMVEEFDAVEAQFATP-----RRTQIVAASD---AIEDEDLIEREEMVVTVTHG 570

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                 S +  K+ D++       T   +L  S  GK Y L    
Sbjct: 571 GYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWR 630

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G  +  G  +  L+ L   + + T               +L  ++KG+         
Sbjct: 631 LPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAF 690

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE-MSRG-KG 686
                 GK  ++    +  +L+        D V +   N K + F+   +    SR   G
Sbjct: 691 TNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTG 750

Query: 687 VRLQSYKDGGISDVICFKICEGLT------------------------------------ 710
           VR  + KDG   +VI      G                                      
Sbjct: 751 VRGITLKDG--DEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAFEEAE 808

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 809 DFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 38/227 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
           E    D+      + E + + +   N   IR             S  +  +  K+GD + 
Sbjct: 704 EEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGDEVI 763

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 T         D   Y      L S     +     +        + AF  ++  
Sbjct: 764 SL---STLRGFETTVEDRDKY------LRSAAWKTDPAPAELPPEK----IKAF-EEAED 809

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +L V++ G        E   + R G+    + + E+   VV       GD + +V +  
Sbjct: 810 FILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVASFPAHDGDQLMLVTDQA 869

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           KL+  +++ I    R                V  F + EG   + +A
Sbjct: 870 KLIRTTVNDIRIAGRNT------------QGVTIFNVAEGEQVVSAA 904


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 280/757 (36%), Positives = 432/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   L  E V+ + L    EE YL YA+  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNLLDLSLEGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  +EL+L  V     D++  ++    EPV+ P++ P++L NG SGIA
Sbjct: 121 SFAAMRYTESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   LID+P+ ++  L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + VE        IV+T +P++V   +++++IA+ +  K++P++ D+RDE
Sbjct: 241 TGRGSFKSRAVYTVEN-----GEIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +N+N+L + + PQV  L  IL 
Sbjct: 296 SDHENPTRLVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R + + RR  FR+  I  R+ IL+GLL AYLNIDE+I IIR  D  K  ++SRF 
Sbjct: 356 EWLVYRMKTVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDDAKAELMSRFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q  AIL ++LR L KLEE QI++E+D L  E+ K++ LL+S ++    +  EI+  
Sbjct: 416 LSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKLERLLSSERRLNTLVKKEIQAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +        RR+   E     KA  ++ ++  E +TVV+S +GW+RS K   VD  A
Sbjct: 476 ALKYGD-----DRRSPLIERIE-AKALTEKELMPSETVTVVLSTQGWVRSAKGLDVDAQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD         +    + +   G+AY+L   +L S R  GE +    + N N   
Sbjct: 530 LNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHSLPSARSQGEPLTGRFNQNENVPF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
           V A + D   + L+ S  G  FI + S+I +  + GKT + ++   ++    K+T    D
Sbjct: 590 VCALIGDDDDRYLISSDHGYGFIAKFSDINSRNKNGKTLINLTPNAQLMPPKKMTAADDD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVR---LQSYKDGGISDVICFK---ICEGLTWID 713
               +    +LL+F ++ +P +S+GKG R   + S K     + +             + 
Sbjct: 650 WCLTISNEGRLLLFPVNSLPSLSKGKGNRMLNIISAKATKREEFVTMLEIIPQASSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL+ + G+RG  GS +P+G  R  K 
Sbjct: 710 AGKRKLTLKPSDLVHYQGERGRRGSKLPRGLQRVDKI 746


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLDFRRATVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 248/753 (32%), Positives = 405/753 (53%), Gaps = 16/753 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L ++   +V++   ++E Y+ YA+S I  RA+PD+RDG KPVHRRI++AM ++G+    
Sbjct: 3   ELKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           + KKSARIVGEV+GK HPHGD +VYD++VR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 63  SHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM++++  +L  +++D VDF+  +++   EP V PS+ PNLL NG+SGIAVGM+T+
Sbjct: 123 YTEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +A+IDNP++ I +L++ I GPDFPTGG+I+  R+ I +++  G+G  
Sbjct: 183 IPPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIM-GRKGIKKAFETGKGKV 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VRA+  +EE G     I+V E+PYQV K++L+EK A L+    +  + D+RDES  +  
Sbjct: 242 KVRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGM 301

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +S +P +++  +F  + ++  F + M  L  G  P+V+ L  +L+ +L H++E
Sbjct: 302 RISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGE-PEVLSLKEVLQHYLEHQKE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ + +     RV IL+GL  A+ NID ++  IR+ +     +  ++S F LT+ Q
Sbjct: 361 VVTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLISDFDLTKKQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL +RL+ L  LE  +I+SE   L+ E E + S+L S ++  + I  EI  +KE + 
Sbjct: 421 AKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEKLLDIIKDEILVLKEKYK 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                                  +  +   +   +        RS       +  ++   
Sbjct: 481 DERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTYRSQHRGGRGIIGINPDA 540

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            DS++      T D +L  +  G+ Y L    +   S +  G AI  L+D+  N+ +   
Sbjct: 541 KDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGTAIINLLDMEPNERVTAV 600

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                +D    LL+V+ +G     E  E       G   L +   +++  V   TG    
Sbjct: 601 IPVEDFDLDDYLLMVTEQGIVKRTELQEF-NTNYTGLIALDLQQNDELIEVRLTTGQEDI 659

Query: 663 VVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSY 719
           ++G      + F+  ++  M R  +GV+           V+    I +G   +    + Y
Sbjct: 660 ILGTELGLAIRFNESEVRSMGRTARGVKGIDL--ASQDKVVGADIIKDGGKLLVVTDKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +           R G G L  K   ++GK  +
Sbjct: 718 GKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTA 750



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 12/219 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-----ALHFKEGDSLKIAL 555
           E +    A +     + +   ++++ +G ++  +    + +     AL  ++ D L    
Sbjct: 592 EPNERVTAVIPVEDFDLDDYLLMVTEQGIVKRTELQEFNTNYTGLIALDLQQNDELIEVR 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                + I+L +  G A       + S       ++  IDL     +V A +     KLL
Sbjct: 652 LTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKG-IDLASQDKVVGADIIKDGGKLL 710

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLL 671
           VV+ KG       ++    +R GK  L +   +K      L V    D V ++ +   ++
Sbjct: 711 VVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTALKVVEEDDEVMLISKEGIVI 770

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG 708
             S+ +I   SR  +GV L S  +G  +  +   +  +G
Sbjct: 771 RMSVSEISSTSRNTQGVNLMSLVEGDRVVSLAHIEDEDG 809


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 239/800 (29%), Positives = 392/800 (49%), Gaps = 73/800 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S+   ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MTFSSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +  + +L  ++++ VDF D ++    EP+V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALI NPEI+  +L++ I GPDFPTGG  +     I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGG-RILGTAGIREAYT 239

Query: 245 LGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            GRG   +R    +E + +        I++TE+P+Q  K+ LIE+IAE +  KR+  + D
Sbjct: 240 TGRGSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R   P +++ +++  + ++T F  NM  L  G  PQ++ L   
Sbjct: 300 IRDESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGD-PQLLTLRQF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L  +L  R + + RR+ F+++    R  +L+GLLIA  N+D +I +IR        +  +
Sbjct: 359 LSVFLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQEL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L++ Q DAIL ++LR L  LE  +I+ E  +L      ++ +L   ++    I  
Sbjct: 419 MDGFGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIET 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K  F+        R T  E + AD   +   +I  +   ++++ +G+++ +   +
Sbjct: 479 EVTELKTKFASP------RRTLIEANLADLDDI--DLIANDQAVILVTEQGYVKRMPVDT 530

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            +              KE D+++        D +L  S  G  Y L A  +   S    G
Sbjct: 531 FNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARG 590

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +  L+ +   + I +      +     L+++++ G       +        G   + +
Sbjct: 591 VPLVQLLPIPREEKITSVIPVSEFSEDEYLVMMTAGGFIKKTALAAFSNIRANGLIAISL 650

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKL-LIFSID--QIPEMSRG-KGVRLQSYKDGGI--- 697
              + ++ V     +   V+G  R + + F  D  Q+  + R  +GVR    ++G     
Sbjct: 651 EEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREGDEFIG 710

Query: 698 SDVICFKICEGLT-----------------------------------WIDSAGRSYNRS 722
            D++   + E L                                     +      + + 
Sbjct: 711 MDILSSAVVETLGNATDADDEETDDPDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKR 770

Query: 723 ENDLLGWLGKRGGVGSLVPK 742
                  L  R G G    K
Sbjct: 771 VPVAQFRLQNRAGKGVTATK 790



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 19/188 (10%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R L   +  + A+  +EGD              + + +     TL            + 
Sbjct: 687 LRPLGRATRGVRAMRLREGDEFIG----------MDILSSAVVETLGNATDADDEETDDP 736

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-----FLKV 644
             L+ D  + ++  T         +LV+++ G    V  ++     R GK      F K+
Sbjct: 737 DVLVEDDGNEEESETV--EQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKL 794

Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            + +++  +  V   D + +V     ++  ++  I   SR   GVR+Q   +      + 
Sbjct: 795 KTPDQLAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVA 854

Query: 703 FKICEGLT 710
               E L+
Sbjct: 855 LVPPEDLS 862


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 273/748 (36%), Positives = 436/748 (58%), Gaps = 22/748 (2%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +++ N + + L+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 2   IMQGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAK 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G   D  S AA R
Sbjct: 62  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPDDPKSFAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+T  A+ +L  + +  VD+ D ++    EPV+ P++ PN+L NGT GIAVGMAT 
Sbjct: 122 YTESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A + L+D+P  +++ L  +I GPD+PT   I+ S E I + Y  G G  
Sbjct: 182 IPPHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA++  E+       IV+T +P+QV  ++L+E+IA  ++AK++P++ED+RDES  +  
Sbjct: 242 KMRAKYEQEDGN-----IVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENP 296

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+++ P+++ +D D +M  +F  +D+E  + +NMN++ +   P+V  L  IL EWLA R
Sbjct: 297 TRLLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFR 356

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            E + +R  +R+  +  R+ IL GLLIAYLNIDE+IAIIR+ED PKPV++ RF +T+ Q 
Sbjct: 357 TETVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPVLMERFGITDIQT 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +I+ E D L  E+  ++  L S +     I  E+    E +  
Sbjct: 417 EAILELKLRHLAKLEEMKIRGEQDELELERAALEKTLGSPRLLNRLIRKELERDAEKY-- 474

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G  R +      A +A    A+I  EP+TV++S +GWIR+ K H +D+++L+++ G
Sbjct: 475 ----GDDRRSPIVARDAAQALETTALITNEPLTVILSEKGWIRAAKGHDIDVASLNYRSG 530

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D    A+   TT  + +L + G+AY+    +L S R  GE +   ++       +     
Sbjct: 531 DGFLDAVKCRTTQPVYILDSTGRAYSTATHDLPSARTQGEPLTGRLNPPPGSLFLHLLAG 590

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGE 666
                 ++ S  G  F V+  E+++  + GK  + +    K+     +    D +AVV  
Sbjct: 591 QPDDWYVLASHFGYGFRVQLKELLSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTL 650

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICE-GLTWIDSAGRSYN 720
             +LLIF + ++P +++GKG +L          G    +    + E G   I +  R   
Sbjct: 651 QGRLLIFPVAELPALAKGKGNKLIQIPTADLTAGKDYVIAAVALPENGQLKIIAGKRQLT 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               D+  +   R   G  +P+GF R  
Sbjct: 711 LKGADVEHYSAGRAKRGLALPRGFQRVD 738


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYANP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 418/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGI +  +  I+ESY+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIIESYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   + ++ +L S ++    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + +    + +I  EP+ V IS +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYENIDIEDLIANEPMVVSISYKGYVKRVDLKAYEKQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   + KG       SE  +N    G   + +   +++    VV 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +       + F ++ + E+ R  +GV+     +            +G   +  
Sbjct: 659 KNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDGNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  +   ++G  +S
Sbjct: 719 SENGLGKQTLAEAYREQNRGGKGIIGMRLTQKTGNLVS 756



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 14/207 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      + +G ++               + A+   EGD L  A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++         ++ +    ++  +    + D   K
Sbjct: 655 KVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVKGIRLAENDFVVGAVVISDDGNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G              R GK  + +   +K   +  V+ V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K++  SI  I E  R   GV+L +  D
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLINTAD 801


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 368/811 (45%), Positives = 498/811 (61%), Gaps = 68/811 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +++I +   +   NV    LR A+ ERYL YALSTI  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MNDIVDDPNMNPRNVAE-PLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAMR 59

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            + L     F KSA+I G+ +G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNID
Sbjct: 60  RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNID 119

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTEARMT +AE +L+G+DED+VDFR  Y+    EP V P+ +PNLLANG SG
Sbjct: 120 GDNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGASG 179

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A L LI  P+   E LL Y+ GPDFPTGG+IVE RE+I E+
Sbjct: 180 IAVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA+W VE++GRG W  VVTEIPYQVQKS+L+E++AELI  K++P+L DIR
Sbjct: 240 YRTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DESAEDVR+VL PK +++DPD+LM  +F  SD+E RF LNMNVL  G  P+V  L  +L+
Sbjct: 300 DESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLR 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +L  RR+VL RRS  RM  ID R+E+L+GL+IA+LN+D +I IIR +D PK  ++    
Sbjct: 360 AFLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDW 419

Query: 423 LTENQVD------------AILNLRLRSL------RKLEEYQIKSE-------------L 451
              +Q               +L + +++L        +    +  E              
Sbjct: 420 SKPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGRS 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIF------------SKSTDLGRRRTT 498
           + L   + +  ++LN   +   ++   E+   ++              S      R    
Sbjct: 480 EGLSDVQAE--AILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRISEQ 537

Query: 499 FCEV--------SRADKATLQQAMIEKEPI-----------TVVISNRGWIRSLKSHSVD 539
             EV         R  + T      E E +           TVV S  GWIR++  H   
Sbjct: 538 LREVKKSFAKDLDRGARLTSFAEAGEAEEVPLEAMIEREPITVVCSQMGWIRAMTGHIDL 597

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              L FK+GD  +   HA TTD++L+  T+G+ YTL A +L  GRG GE ++L++DL + 
Sbjct: 598 NRELKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGGRGMGEPLRLMVDLPNE 657

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +I+  F++    +LLV SS G+ F+V E+E++A TR GK  L V    K K+   V+GD
Sbjct: 658 AEILDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVKAKVCKPVSGD 717

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            VAVVGENRK+L+F  D++PEM RGKGVRLQ YKDGG+SDV  F + +GL+W D AGR  
Sbjct: 718 AVAVVGENRKVLVFMADELPEMGRGKGVRLQKYKDGGMSDVTTFTLTDGLSWRDPAGR-- 775

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+E +L  W+GKR   G + P+GFPR   F
Sbjct: 776 TRTETNLEEWIGKRATSGRMAPRGFPRDNTF 806


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 394/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTRIEMDAGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  +  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERKAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 244/785 (31%), Positives = 403/785 (51%), Gaps = 45/785 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +N+  + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQTTNARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +++P+ S E+LLE     I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDG-VPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D
Sbjct: 358 LSIDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    +   Q DAIL L+LR L  LE  +I  E   L A  + ++ +L   ++Q
Sbjct: 418 EARAGLIELLDVDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I+ E+ E+ + F        RRT        D     + +I +E + V I+  G+  
Sbjct: 478 RAIISAELGEIVDKFGDE-----RRTRIL---PFDGEMSMEDLIPEEDVVVTITRDGFAK 529

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  RS K     +     +  D ++      T + +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADFLVLATKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSEEK---MKLVVKVT---GDHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRL 689
              + +  +E     +LV   T    + + +V  + + + F  + DQ+  M R   GVR 
Sbjct: 650 IIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++  G  +++  ++  +    +      Y +           RG +G  V K     G
Sbjct: 710 MKFR--GDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERG 767

Query: 749 KFLSS 753
             + +
Sbjct: 768 GLVGA 772



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 19/226 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEG-----D 549
           +        L     E     V+ + RG ++           S  + A++ +E      D
Sbjct: 605 QPDEHIAQVLAIRTYEDADFLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPD 664

Query: 550 SLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            L  A      + ++L+S DG+A  +T     L S       ++ +     + ++++  V
Sbjct: 665 ELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRGM-KFRGDDELLSMEV 723

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV-SSEEKMKLVVKVTGD-HVAV 663
                 LL+V+  G A      E    +R   G    K+      +   + V  D  V V
Sbjct: 724 PRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMV 783

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           + E+ KL+  +   +   +R   GV      +G     I      G
Sbjct: 784 ITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSG 829


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/757 (35%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN +E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE        IV+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVEN-----GEIVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+++ P++  +D D LM  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSERRMKTLIKKELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   KA  QQ ++  E +TVV+S +GW+R  K H VD  +
Sbjct: 476 GEDYGDE-----RRSPLVERTE-SKALTQQELVAVESVTVVLSEKGWVRCAKGHEVDGQS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS   +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDSFLRSAQGRSNQPSVFIDTSGRAFATDTHTLPSARSQGEPITTRFNLAPGTTM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     L+ S  G  FI    ++++  + GK  L + +  K+ L  KV      
Sbjct: 590 EHLLLSDDEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKPQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS+D +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTAVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/769 (33%), Positives = 411/769 (53%), Gaps = 43/769 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+ L     ++K
Sbjct: 7   DKIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD++VRLAQ F  RYPL+ G GNFGN+DGDSAAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++   +L  +D++ VDFR  ++E   EP V P+++PNLL NG+SGIAVGMAT+IP H
Sbjct: 127 RMSKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDN----------PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           N+ E+  A + +IDN           E   E L+E ++GPDFPTGG I+  R  I ++YR
Sbjct: 187 NMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQIL-GRYGIEQAYR 245

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA+  +EE+  G   I++TEIPYQV KS+LIEKIAEL+  K++  +  IRDE
Sbjct: 246 TGKGKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDE 305

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   ++    R ++ ++++  ++  S ++  F +NM  L  G    V  L  +L+ +
Sbjct: 306 SDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPH-VFNLKEMLEAY 364

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY--LNIDEIIAIIRNED---KPKPVMVS 419
           L H+++V+ RR+ F +     R  I++G LI      ID +I +IRN     + K  ++ 
Sbjct: 365 LDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIE 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +  L+E Q  AI+++RLR L  LE  ++  E + L  +   + SLL    Q    I  E+
Sbjct: 425 KIGLSEIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDKIAYLKSLLEHEDQLLKVIKEEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
             V+E F+       RR+   E+S  D     + +I++E + V I++ G+I+        
Sbjct: 485 IVVREKFTDP-----RRS---ELSLLDDEIDIEDLIDEEEVVVTITHFGYIKRXPLVTYK 536

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K     +  ++  E D ++        D I+  +  G+AY + A  +   S    G A
Sbjct: 537 EQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKIKAYKIPEASRTARGLA 596

Query: 590 IQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  L+ LN ++ I   F          L +++ KG       +      + G   L +  
Sbjct: 597 IVNLLHLNVDEKISAVFPVKQNEHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQD 656

Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +++  V + T  D + +  +    ++F    I    R  KGVR  +        VI   
Sbjct: 657 ADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVRAINL--SKEDYVISAT 714

Query: 705 IC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           I  EG   + +      +          +RGG G ++ K   ++G  ++
Sbjct: 715 IPKEGEQILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVA 763



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
           V     A       E E    +I+ +G I+     +        + AL  ++ D L    
Sbjct: 605 VDEKISAVFPVKQNEHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQDADELVGVY 664

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                D+I++ +  G        N+       + ++  I+L+    +++A +     ++L
Sbjct: 665 ETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVRA-INLSKEDYVISATIPKEGEQIL 723

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLL 671
           + +  G        E  +  R GK  +    ++K   VV +T     + + ++     ++
Sbjct: 724 IATKNGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVAITSVSDSNGLLMITSEGVII 783

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
              + QI  + R  KGV+L +  DG    V+C +
Sbjct: 784 RIKVSQISSLGRYAKGVKLINLTDG--IHVVCME 815


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 414/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D+PE  I++L+  I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R    +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ ++ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+  
Sbjct: 478 TGLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI------------DQI----------------PEMSRGK-GVR-------- 688
              K + F+               I                  +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 83/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/758 (34%), Positives = 414/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGI +  +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+  + R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTTIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + ++   + +I  EP+ V +S +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   +  G       SE   N    G   + +   +++    VV 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +       + F ++ + E+ R  +GVR     +            +    +  
Sbjct: 659 KNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  +S
Sbjct: 719 SENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 14/228 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++         ++ +    ++  +    + D + K
Sbjct: 655 KVVDKNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           K++  SI  I E  R   GV+L +  D  +    C K  E      S+
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLINTTDKVVYVNSCPKEEEPENLETSS 822


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKQED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/762 (33%), Positives = 393/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+I ELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTRIEMDAGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RG VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R         +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/749 (33%), Positives = 402/749 (53%), Gaps = 30/749 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E N+    +   ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    A
Sbjct: 1   MDEYNLLNQDVESIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 61  YRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M ++A  +L  + +D VDF+  Y++   EP V PS+FPN+L NG  GIAVGMAT+I
Sbjct: 121 TEAKMAKMAVNMLTDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E    +I NP+ ++++L++ I GPDFPTGGII+  R  I  +Y  GRG   
Sbjct: 181 PPHNLHEVIEGMKIVIQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +EE+ +G  CIVVTEIPY V K++L+E IA L+  KR+  + D+RDE++ D   
Sbjct: 240 LRSKTSIEEI-KGRNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  +P +++  +F  + ++    + +  L  G +P+++ L  IL+E++  +  V
Sbjct: 299 IVIELKKDANPQVVLNKLFSYTQLQDSVGVILLALVNG-IPKILTLKQILQEYIDFQVSV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I I++N     + K  + +RF LT+ Q 
Sbjct: 358 IRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFGLTDVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D I  + L  L  +E  +I  EL  + A    ++ +L + ++ ++ I  E+  ++E F  
Sbjct: 418 DHIAQMTLGRLTGMERQKIIDELAEITATVADLEDILANEQRVFDIIIEEVEAIQEKF-- 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  E    +     + +I  E   V  +N G+I+                +
Sbjct: 476 ----GDERRTQIENVSGEVDI--EDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGV 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
           + +  +E D +       + D IL ++T G AY +    L  G     G  I+ L++L+ 
Sbjct: 530 TGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSKASRGVNIKNLLELSD 589

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +  I        +D    +++V+ +G       S      + G   + +   +++  V  
Sbjct: 590 DNLIAAMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGDEIAGVRL 649

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +   N   +  S + +  MSR   GVR    ++G    V   +I EG T + 
Sbjct: 650 TGGQNELLIATHNGMAIRISENDVRVMSRTAHGVRAIKLREGDYV-VSMARIREGATVLT 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +     R        +  RGG G L  K
Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGVLNYK 737



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 14/228 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
           A ++    + +   V+++ RG I+     +        L A+   EGD +         +
Sbjct: 595 AMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGDEIAGVRLTGGQN 654

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            +L+ + +G A  +   ++  +S   HG      I L     +V+         +L VS 
Sbjct: 655 ELLIATHNGMAIRISENDVRVMSRTAHG---VRAIKLREGDYVVSMARIREGATVLTVSE 711

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G    V         R G   L   + E   + V    D + ++  +  ++      I 
Sbjct: 712 TGLGRRVALENYPIRHRGGHGVLNYKNGEVCGIKVVDEEDDIIMISSDGIVIRLRACDIS 771

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            M R  +GVRL      G + V+ F   E     + A       E+ L
Sbjct: 772 VMGRYSRGVRLMKV--AGENKVVTFTRTEHDDEAEIAEVEKASEEDIL 817


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/748 (35%), Positives = 442/748 (59%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP  S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 182 ATDIPPHNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKED-----GEIVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENSIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 357 AFRRTTVRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++
Sbjct: 417 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKV 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      H  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 591 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAG 716
            +    ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  
Sbjct: 651 AMSSVGRMLVFPITELPQLSKGKGNKIINISAPAAKEGNELLARLLLVKPTQSLVFVSGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R      +D+  + G+R   GS + +G 
Sbjct: 711 RKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/851 (29%), Positives = 415/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+  
Sbjct: 478 TGLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +  ++ +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI------------DQI----------------PEMSRGK-GVR-------- 688
              K + F+               I                  +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KE D L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/750 (34%), Positives = 399/750 (53%), Gaps = 29/750 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V++   ++  Y+ YA+S I  RAIPD+RDG KPVHRR ++AM E G     A+KKS
Sbjct: 13  KVIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKS 72

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V   +GK HPHGD S+YD+LV++AQPF  R PL+ GQGNFG+IDGDSAAA RYTEAR
Sbjct: 73  ARAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEAR 132

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+ AE +L  +D+  VDF   ++    EP V PSK PNLL NGTSGIAVGMAT++P HN
Sbjct: 133 LTRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+C A    I NP+ ++E L++ + GPDFPTGG+ +   E IV +Y  G G   VR  
Sbjct: 193 LREVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGL-ITGTEGIVSAYHTGYGKLTVRGV 251

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+V   +  I+++EIPYQV K+R++E IA L+  K+I  + D+RDES  D   V+  
Sbjct: 252 AEIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVD 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + + P +++  ++  + +E+ F +    +S  + P+V+ L  I+ E+L HR  V+ RR
Sbjct: 312 LKKGVIPTVVLNQLYKHTPLESTFGIINLAISDNQ-PKVLGLKAIISEFLHHRATVVRRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432
             F ++    R+ IL GLL+A   IDE+IA IR     +  +  +++ F LTE Q  AIL
Sbjct: 371 CEFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIATFGLTEPQTVAIL 430

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LR L  LE+ +I+ E D+L     +++ +L+     + +I  EI +V E +      
Sbjct: 431 QMQLRRLAALEQAKIRDERDSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGD---- 486

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544
             RRT   E++ +     ++ +IE +P+ + I+ + +I+          +     +  + 
Sbjct: 487 -DRRT---EITCSQTILEREDLIEDKPVLISITTQNYIKRLPLETYRMQRRGGRGVIGMA 542

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN--Q 600
            K+ DS++    A   D +L  +TDG+ Y L   N+   S    G+AI  L++L      
Sbjct: 543 TKDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKGKAIVNLLELQDELIT 602

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
            ++    +     LL  + +G    V + +       G   + +   + +  V    G  
Sbjct: 603 AVIPIRTFRHDRYLLFSTEQGQVVKVPQDQFSRPRSTGINAISLRENDSLVDVKLTDGTK 662

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +     + L F    +  + R   GVR    K G +  V    + E    +      
Sbjct: 663 ELILSTRKGQSLRFHEQTVRTVGRNASGVRGIKLKYGDL--VQAATVVEKDHLLTITELG 720

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           Y +           RG +G       P++G
Sbjct: 721 YGKRTEFDEFRGHGRGTMGVRNILTAPQNG 750


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/851 (29%), Positives = 413/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+  
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    + +G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 85/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A     +D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTSGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/757 (33%), Positives = 416/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   V+  
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L+   + +  +  E+ E+K+ ++     
Sbjct: 421 DMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 477 --KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D +++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K+  ++ +  V  +   
Sbjct: 593 SDTIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 TKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 143/443 (32%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM---LSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +      +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYNDKRRTQIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDN--L 454
           E    I  ED  K   +      +  V  I   + ++ R+          I+ +     +
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTIEDDYAEKII 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N  A EI ++ +        GR  +    +S  +K +    +
Sbjct: 544 TASTLDTMMIFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVSDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +   T + IL
Sbjct: 599 KEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         +       + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + + + EK   VV        + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADEEKVAAIT 801


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 244/797 (30%), Positives = 392/797 (49%), Gaps = 59/797 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+   +++   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM ++      A+
Sbjct: 1   MAESKSTLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD+LVRLAQ F  RYPL+ GQGNFG+IDGDS AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM ++A  +L  +++  VD+   Y+E++ EP V P+K PNLL NG  GIAVGMAT+IP
Sbjct: 121 EVRMQKLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A++ALID+P I + +L  Y+ GPDFPTGG+I+     I  +Y  GRG  +V
Sbjct: 181 PHNLTELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVIL-GTAGIRSAYLTGRGSVKV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +EE  +G   I+VTEIPYQV K+RLIE+IA L+  K++  + DI+D S      +
Sbjct: 240 RARCEIEEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +     +++  ++ +SD++T F +NM  +  G  P+V+ L+  L+ ++ HRR V+
Sbjct: 300 WIQVKKDHAAQIVLNKLYKMSDLQTSFGVNMIAIVNG-RPEVLNLEKCLRHFIDHRRTVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------- 413
            RR  + +     R EI++GL +A  +ID +I +IR    P                   
Sbjct: 359 TRRCRYELAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDGFAKFL 418

Query: 414 ----------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                     +      + L E Q  AIL++RL+ L  LE  +++ E   L     +++S
Sbjct: 419 ERCERPAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELES 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKS-------TDLGRRRTTFCEVSRADKATLQQAMIE 516
           +L    +    I  E+  ++  +             G + +   E+   +       ++ 
Sbjct: 479 ILTDPDKLMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVA 538

Query: 517 KEPITVVISNRGWIRSLKSHSVDLS---ALHFK------EGDSLKIALHAHTTDRILLLS 567
            E + V+I+ + +++ L +    +     +  K      + D +     A     +LL +
Sbjct: 539 DESMVVMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFT 598

Query: 568 TDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSK 620
             G+ +         G      +A+   +DL   + I+    Y     D    +++ S +
Sbjct: 599 NTGRVFRKRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEEVDDDHFVVLASRQ 658

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIP 679
           G       SE       G     V   + +       G   + +     + + F    + 
Sbjct: 659 GYIKRTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVR 718

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEG---LTWIDSAGRSYNRSENDLLGWLGKRGG 735
            M R  +GVR    +DG     I     E    + ++    + Y +           R G
Sbjct: 719 PMGRTARGVRGMGLRDGDEVVNILVLDRENEGEVGFLTVCEKGYGKRTPASEYRSQSRSG 778

Query: 736 VGSLVPKGFPRSGKFLS 752
           +G    K   R+GK + 
Sbjct: 779 LGLKTIKVSERNGKVVG 795



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 16/208 (7%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHT 559
           +    ++  ++ +   V+ S +G+I+           S  L A +  EGD L  A   + 
Sbjct: 637 EMVAYREEEVDDDHFVVLASRQGYIKRTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNG 696

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----LL 615
              I++ S +G+A      ++         ++ +  L    ++V   V D   +     L
Sbjct: 697 GCDIIMASREGQAIRFDEADVRPMGRTARGVRGM-GLRDGDEVVNILVLDRENEGEVGFL 755

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLL 671
            V  KG       SE  + +R G     +   E+    + +V     D + VV    K++
Sbjct: 756 TVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERNGKVVGMVKVREADQLMVVTSQGKII 815

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
              +  I E+ R   GVRL    D  + 
Sbjct: 816 RTPVAGISELGRATQGVRLIRLNDEEVV 843



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 12/138 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR-------ILLLSTDGKAYTLPAGNLLS 582
           +R +   +  +  +  ++GD +   L     DR        L +   G     PA    S
Sbjct: 717 VRPMGRTARGVRGMGLRDGDEVVNILV---LDRENEGEVGFLTVCEKGYGKRTPASEYRS 773

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKT 640
               G  ++ +     N  +V         +L+VV+S+G       + I    R   G  
Sbjct: 774 QSRSGLGLKTIKVSERNGKVVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVR 833

Query: 641 FLKVSSEEKMKLVVKVTG 658
            ++++ EE +  + +V  
Sbjct: 834 LIRLNDEEVVVGLARVDD 851


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 324/734 (44%), Positives = 467/734 (63%), Gaps = 10/734 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E ++  ++R  LE RYLAYALSTI  R++PD+RDG KPVHRRI+ AM  + LD G+ 
Sbjct: 4   VTAEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSG 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F QRYPL+ GQGNFGN+DGD AAA RY
Sbjct: 64  FKKSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T VA+ +L+ +D   VD   TY+    EPVV P++FPNLLANG +GIAVGM+T+I
Sbjct: 124 TEARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  E+  AAL LI +P+  + +L++++ GPDFPTGG++V   E + E Y  GRGG R
Sbjct: 184 PPHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLR 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RARW  E VG G+W +VVTEIPY VQK RLIE+IA+LI+ ++ P L D+RDES   VRI
Sbjct: 244 LRARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAKVRI 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++R LDP+ +M  +F  SD+E R  +N+NV++    P+VM L G+L+ WL HR +V
Sbjct: 304 VLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             RR++  ++ I  R+ +L+  L  +LNID +IAII+  D P P ++ RF +   Q +A+
Sbjct: 364 HTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAEAV 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR+LR+LEE  I+ E+    A   ++ ++L      W  +  E++  ++ FS    
Sbjct: 424 LNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDG-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T       +     + +I+KEP+T V+S +GWI++LK H +DL  + FKE D L
Sbjct: 482 ----RRTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEEDGL 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           + A+  ++   +  L+  GK Y+L    L SG+  GE + +L +L+    I+     D  
Sbjct: 538 ERAVKGYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPE 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            +  V +  G  F +   +++AN R GK  + +   ++   V  V G  VA +   R+LL
Sbjct: 598 GEYFVTTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAAVAAISHGRRLL 657

Query: 672 IFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           I  +++ P + RGKGVR+Q+  +  G+ D + F    GL  +DS  R+   +E  L  W 
Sbjct: 658 ICRLEEFPLLGRGKGVRIQNLGRGEGLVDAMTFDPQAGL-VLDSGKRTRQLTE--LDKWQ 714

Query: 731 GKRGGVGSLVPKGF 744
           G RG  G+++P GF
Sbjct: 715 GTRGSRGAMLPHGF 728


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 242/743 (32%), Positives = 395/743 (53%), Gaps = 34/743 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKSAR+
Sbjct: 5   QVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSARV 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++Y+++VR+AQ F  RYPLI GQGNFG+IDGD AAA RYTE R+++
Sbjct: 65  VGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L  ++++ VDF   Y+    EP V P K PNLL NG++GIAVGMAT+IP HN+ E
Sbjct: 125 IAEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLNE 184

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A + LIDNP+ ++ +L+ Y+ GPDFPTGG IV  R  I  +Y  G+G   ++A+  +
Sbjct: 185 LAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIV-GRAGIESAYLTGKGSIIMQAKSEI 243

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE  + +  I+ +E+PYQV K++LIE +AE++   R+  + D+RDES ++   ++     
Sbjct: 244 EEGAKST-RIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + ++++  +   + ++T + +N  VL  G  P+++ L   L++++ +R  V+ RR+ F
Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDGM-PRILSLKETLEQYIYYRSIVVERRTRF 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLR 435
            + A ++R  IL GLLIA  NIDE+I II+    P            L+E Q  AIL++R
Sbjct: 362 ELDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIEAFLLSEEQAKAILDMR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE+ +I SE   L      +  +L+S  +  + I  E+ E+   +        R
Sbjct: 422 LQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLEILSIIKDELTELISKYGDE-----R 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
           RT   E    D     + +I++E + V I++ G+I+          +     +     K 
Sbjct: 477 RTQIIEA---DGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRMQRRGGRGVIGAETKT 533

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTA 605
            + +     A T D +L  +  GKA+ L    +        G++I  L+ L  ++ I  A
Sbjct: 534 EEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGKSIVNLLQLEPDERIAGA 593

Query: 606 FVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVA 662
                     +++V+  GN   +         + G   + +   + +       G+  + 
Sbjct: 594 IPVKSFQAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAVNLK-GDSLVSAKLTNGEKELL 652

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE---GLTWIDSAGRS 718
           V  +  K + F    +   +RG  GV+  S   G   ++I   + E   G T +    + 
Sbjct: 653 VATKFGKAIRFKEGDVRASNRGTMGVKAISLNMG--DELISMDVIEPGSGSTLLTVTNQG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +          +RGG G    
Sbjct: 711 YGKRTELEEYPQQRRGGKGVKNI 733



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 13/193 (6%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V+++  G I  +   +        + A++ K GDSL  A   +    +L+ +  GKA  
Sbjct: 604 IVLVTRSGNIVKMPLQAFSNPRKGGIKAVNLK-GDSLVSAKLTNGEKELLVATKFGKAIR 662

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEII 632
              G++ +       ++  I LN   ++++  V +      LL V+++G     E  E  
Sbjct: 663 FKEGDVRASNRGTMGVKA-ISLNMGDELISMDVIEPGSGSTLLTVTNQGYGKRTELEEYP 721

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
              R GK    + + +            D + V   +  ++      I    R  +GVR+
Sbjct: 722 QQRRGGKGVKNIDARKGYVCCTTTVSEEDELLVTTRDGVIIRIPASDIRVQGRSTQGVRI 781

Query: 690 QSYKDGGISDVIC 702
            + K G     I 
Sbjct: 782 MNVKPGDEVAAIA 794



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 6/136 (4%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
             G +R+    ++ + A+    GD L     +   +   +L ++  G             
Sbjct: 664 KEGDVRASNRGTMGVKAISLNMGDELISMDVIEPGSGSTLLTVTNQGYGKRTELEEYPQQ 723

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           R  G+ ++ +        +          +LLV +  G    +  S+I    R   G   
Sbjct: 724 RRGGKGVKNI--DARKGYVCCTTTVSEEDELLVTTRDGVIIRIPASDIRVQGRSTQGVRI 781

Query: 642 LKVSSEEKMKLVVKVT 657
           + V   +++  + ++ 
Sbjct: 782 MNVKPGDEVAAIARIN 797


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/750 (36%), Positives = 438/750 (58%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+ +++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP  +++ LL  + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       IV+T +P+Q   S++ ++IA+ + AK++P++EDIRDE
Sbjct: 238 QGRGSVKMRAVWKKED-----GEIVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           + ++  VR+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADQENPVRLVIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  +  R+ IL GLLIA+LNIDE+I IIR+ED+PK V+++RF 
Sbjct: 353 EWLQFRRATVTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTVLMARFK 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILNLRLR L KLEE ++K+E   L  E++ ++ +L+S ++    I  EI++ 
Sbjct: 413 LSDEQAEAILNLRLRHLAKLEETELKAEKARLEEERQHLEQILSSERRLNTLIKKEIQQD 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++       RR+   E     KA  +  M+  EP+TV++S  GW+R  K H +D+  
Sbjct: 473 AKTYAS-----TRRSPLVEREE-AKAISETEMMPAEPVTVILSEMGWVRCAKGHDIDVQN 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD      +  +    + + + G++Y +   +L S R  GE +   ++L     +
Sbjct: 527 LNYKAGDKYLAHAYGKSNQPAVFIDSSGRSYAVDPLSLPSARSQGEPLTGKLNLPAGASM 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               + +    LL+ S  G  FI +  ++IA  + GK  L +    K+     +      
Sbjct: 587 EQVLIENENQPLLMASDAGYGFICQFEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS-----DVICFKICEGLTWI-DS 714
           +  +    ++L+F + ++P +S+GKG ++               V    I E  + +  S
Sbjct: 647 LLALTHAGRMLMFPVQELPSLSKGKGNKIIGIPAADAKVRSDFVVKLLLISENASLVFHS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKITLKPEDLQKFRAERGRRGSKLPRGL 736


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/825 (31%), Positives = 384/825 (46%), Gaps = 99/825 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 41  DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEV+G  HPHGD ++Y +L RL Q +  R PLI GQGNFG++D D  AA RYTEAR
Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++  A ++L  +D D VDF   Y+    EP V P++FPNLL NG  GIAVGMAT+IP HN
Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  A I +P ISIE L+  + GPDFPTGG+++  +     +Y+ GRG   +R+R
Sbjct: 221 LGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +EE       IV+TEIPYQ+ KS L+EKIAE    KR+  + DIRDES  +   V+  
Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   PD+++  ++  +  ++ FP NM  L+ G  P+ M L  I+  ++  R EV+ RR
Sbjct: 340 LKRDATPDVVLNQLWRHTPAQSSFPANMLALN-GGRPETMSLKDIIAAFVQFREEVITRR 398

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           S + +     R  +L G++IA  N+DE++ IIRN   P                      
Sbjct: 399 SKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIK 458

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L++ QVDAIL LRL  L  +   QI  EL  L     ++  +L +
Sbjct: 459 LIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRN 518

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++ +  +  E   V+  F+       RRT     S    A   + +IE+E + V +++ 
Sbjct: 519 RERLYEIMVEEFDAVEAQFATP-----RRTQIVAASD---AIEDEDLIEREEMVVTVTHG 570

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                 S +  K+ D++       T   +L  S  GK Y L    
Sbjct: 571 GYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWR 630

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G  +  G  +  L+ L   + + T               +L  ++KG+         
Sbjct: 631 LPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAF 690

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE-MSRG-KG 686
                 GK  ++    +  +L+        D V +   N K + F+   +    SR   G
Sbjct: 691 TNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTG 750

Query: 687 VRLQSYKDGGISDVICFKICEGLT------------------------------------ 710
           VR  + KDG   +VI      G                                      
Sbjct: 751 VRGITLKDG--DEVISLSTLRGFETTVEDRDKYLRSAAWKTDPAPAELPPEKIKAFEEAE 808

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +      Y +  +        RGG G    +   R+G  ++S
Sbjct: 809 DFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVAS 853



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 38/227 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
           E    D+      + E + + +   N   IR             S  +  +  K+GD + 
Sbjct: 704 EEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGDEVI 763

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 T         D   Y      L S     +     +        + AF  ++  
Sbjct: 764 SL---STLRGFETTVEDRDKY------LRSAAWKTDPAPAELPPEK----IKAF-EEAED 809

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +L V++ G        E   + R G+    + + E+   VV       GD + +V +  
Sbjct: 810 FILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSVVASFPAHDGDQLMLVTDQA 869

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           KL+  +++ I    R                V  F + EG   + +A
Sbjct: 870 KLIRTTVNDIRIAGRNT------------QGVTIFNVAEGEQVVSAA 904


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRAIWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISENDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFHS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/767 (32%), Positives = 403/767 (52%), Gaps = 34/767 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +    V + VK V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+ 
Sbjct: 7   DVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVT 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
            G+  +KS+ IVG+ +G  HPHGD  +YD+LVR+AQ F  RYPL+ GQGNFG++DGD AA
Sbjct: 67  SGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM  +AE +L  +++D V F+  Y++  +EP V PS FPNLL NG+SGIAVGM
Sbjct: 127 AMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGM 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T++P HN+ E+ +A + LID P+ ++  L+EY+ GPDFPT    +  R  + ++Y+ GR
Sbjct: 187 STNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAA-NIVGRADVKQAYQTGR 245

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R+RA + VE  GR    IV+TE+PYQ  KS L+E+IA+ +   ++  + D+RDES  
Sbjct: 246 GRVRMRAEYHVESNGR-RDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDR 304

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  + D++   + + S +E  F +    L  G  P+V+ L  +L E+++H
Sbjct: 305 NGVRIVIDLKQKANTDVVENRL-LESHLEKTFSVINLALVDGE-PKVLTLKELLAEYVSH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424
           R+EV+ RRS   +   + R  IL G L A  N DE++ +I++    D  K  + S F  +
Sbjct: 363 RKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETLKSAFDFS 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           ++Q D I+ ++L SL  +E   I+SE +++ A  E+++ +L S ++  + I  E+RE+K 
Sbjct: 423 QDQADHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQELLDVIKDELREIKT 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--- 541
            ++       RRT+F E +        + +I +E   VV+S   +I+ + + + D     
Sbjct: 483 QYADE-----RRTSFIEDTGT---VADEDLIPEEDTVVVLSEGDYIKRVPAETFDAQHRG 534

Query: 542 -----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
                    K+GD +     A T D +L  +  G+ Y L    +   S    G +   ++
Sbjct: 535 GKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARGTSAVNIL 594

Query: 595 DLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           DL+  ++I      D          L + +  G        E       G   + +   +
Sbjct: 595 DLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRTSVGEFGNILSTGIIAIDLEDGD 654

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKI 705
            +  V    G H  ++  E    + F    +  M R  +GVR         I+ V   + 
Sbjct: 655 ALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAMGRNARGVRGMDLDAADRIAGVAAVES 714

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + +      Y +           R G G +  K   R+G  +S
Sbjct: 715 EDDRSLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRNGDVVS 761



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 15/220 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           E+S    A       + E +T + +  G+++              + A+  ++GD+L   
Sbjct: 601 EISAVVTADDLDFKADDEYLT-MATRNGYVKRTSVGEFGNILSTGIIAIDLEDGDALADV 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC 612
                +  ++L S  G A     G++ +   +   ++ + DL+    I  V A   +   
Sbjct: 660 EVTDGSHDVILGSEAGMAIRFDEGDVRAMGRNARGVRGM-DLDAADRIAGVAAVESEDDR 718

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            LL V+  G        E  + +R GK  + + + ++   VV V      D + V+  + 
Sbjct: 719 SLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRNGDVVSVDAVGDDDSLVVMSADG 778

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +++   +D+I  + R  KGV + +   G     +  +  +
Sbjct: 779 QIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVSVRAAD 818


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 267/757 (35%), Positives = 435/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP+V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HNV+E+  A + L+DNP+  + +L+E++ GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  + RA + VE        +V+T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKARAVYTVEN-----GEVVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D + +M  +F  +D++  + +N+NVL +   PQV  L  +L 
Sbjct: 296 SDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  +R+  I  R+ IL  L+IA+LNIDE+I IIR  D PK  ++SRF+
Sbjct: 356 EWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFN 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL+L+LR L KLEE++IK+E   L AE++K+  LL+S ++    I  E+ + 
Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKAEQSELEAERDKLQLLLSSERRMKTLIKKELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   +A  +Q ++  E +TVV+S +GW+R  K H VD  +
Sbjct: 476 SEDYGDE-----RRSPLVERTE-SRALTEQELVPVESVTVVLSEKGWVRCAKGHEVDGKS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + T G+A+      L S R  GE I    +L     +
Sbjct: 530 LSYKAGDGFLRSAQGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLASGATM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GD 659
               + D     L+ S  G  FI    ++++  + GK  L + +  K+    +V      
Sbjct: 590 EHLLLSDEEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKAQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWID- 713
            +  +    ++L+FS+D +P++S+GKG ++        K+     +    I E  +    
Sbjct: 650 SILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTSVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/778 (32%), Positives = 390/778 (50%), Gaps = 61/778 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D AAA RYTE R+  +A   +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT+IP HN+ EI +   
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE---EV 261
           ALI NPEI+I++L+++I  PDFPTG  I+  R  I ++Y  GRG   +R    +E   + 
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQIL-GRSGIKDAYMTGRGSITMRGVAEIETLRQN 239

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           GR    I+VT++PYQ  K+ LIE+IA+++  K+I  + DIRDES      ++    R   
Sbjct: 240 GREKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAY 299

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           P +++ +++  + ++  F  NM  L  G  PQ++ L   L+ +L  R EV+ RR+ + ++
Sbjct: 300 PRVVLNNLYKHTPLQANFGANMLALVNGE-PQLLNLKQFLQVFLDFRVEVITRRTRYELR 358

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
               R  IL+GLLIA  N+D +I +IR        +  ++  ++L++ Q DAIL ++LR 
Sbjct: 359 KAQERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMDGYNLSQAQADAILQMQLRR 418

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I++E  +LL +   ++ +L   ++ +  I  E+ E+K I         RRT 
Sbjct: 419 LTALEADKIEAEHQDLLLKITDLEDILARRERVYAIIEAELTEIKTIHQS-----DRRT- 472

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDS 550
             E+   D       +I  E   ++++ +G+I+ +   + D          A   KE D 
Sbjct: 473 --ELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQNRATRGKAATKMKEDDG 530

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV- 607
           +   L     D +L  +  G  Y+L A  +   S    G     L+ +  ++ I      
Sbjct: 531 VDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQLLPIPKDEKITAMLAV 590

Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV 664
             +     L++++  G       S        G   + +   ++++ V      D + V 
Sbjct: 591 SEFTEDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLEDGDELRWVRLARQEDSIIVA 650

Query: 665 GENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDV--------------------- 700
                 + F  D  Q+  + R  +GVR    K      V                     
Sbjct: 651 SSEGMAIHFQADHNQLRPLGRSTRGVRAMKLKSDDDKLVSMDIVSSQITAAIAAADTAED 710

Query: 701 ------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +   + +G   I    + + +        L  R GVG    K   ++ +  S
Sbjct: 711 EDDNEEVTENVDQGPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLAS 768



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 46/261 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
                   A L  +   ++   V+++  G+I+        K  S  L A+  ++GD L+ 
Sbjct: 578 IPKDEKITAMLAVSEFTEDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLEDGDELRW 637

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVY-- 608
              A   D I++ S++G A    A +      GR     ++ +   + +  +V+  +   
Sbjct: 638 VRLARQEDSIIVASSEGMAIHFQADHNQLRPLGRST-RGVRAMKLKSDDDKLVSMDIVSS 696

Query: 609 -------------------------DSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTF 641
                                    D    ++ V++KG    V         R G     
Sbjct: 697 QITAAIAAADTAEDEDDNEEVTENVDQGPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRA 756

Query: 642 LKVSSE-EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGI 697
           +K  S+ +++  +  V   D + +V     ++  +++ I   SR   GVR+Q    D  I
Sbjct: 757 IKFKSKADRLASLRIVNPEDELMLVTGRGIMIRQAVESISLQSRSATGVRVQRLDGDDAI 816

Query: 698 SDVICFKIC---EGLTWIDSA 715
             V         +GL  +D  
Sbjct: 817 VAVALVPPPAEEDGLETVDMT 837


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRTERGRKGSTLPRGL 736


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/857 (29%), Positives = 394/857 (45%), Gaps = 116/857 (13%)

Query: 1   MGVDNISNS--NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN            ++K VS+   +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MADDNDQPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            A  E G      + KSARIVG+VIGK HPHGDQS+YD+LVR+AQ F  R  LI GQGNF
Sbjct: 61  FAAHESGHLPERRYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD AAA RYTE+R+ + A  +L  +D++ VDF+  Y+ E  EP V P++FPNLL N
Sbjct: 121 GSVDGDPAAAMRYTESRLAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +A +ALID+P ++IE L E + GPDFPTGG+I+  R  
Sbjct: 181 GAGGIAVGMATNIPPHNLGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLIL-GRAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y  GRG   +RA+  +EE+ +    ++ TEIPYQV K+ L+EKIAEL+  KR+  +
Sbjct: 240 TRQAYATGRGSIIMRAKSHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES  D   ++    R    ++++  ++  + +++ F  NM  L+ G  P++M L 
Sbjct: 300 SDLRDESDRDGMRIVVEIKRDAMAEVVLNQLYRYTPLQSSFGCNMVALN-GGRPELMNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
            +L  +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR    P     
Sbjct: 359 DLLLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTARE 418

Query: 414 ------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                   +      + L+E Q  AIL+LRL+ L  L   ++  
Sbjct: 419 ALMARDWPAHDIAPLIALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGD 478

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           EL  L  E      +L S  +    +  E+ EV+ +F+             E+  +D + 
Sbjct: 479 ELKKLADEIADYLDILRSRVRIQAIVKTELAEVRALFATPRK--------TEIIDSDFSV 530

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I +E + V +S+ G+++          +      S +  ++ D +     A T  
Sbjct: 531 EDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHT 590

Query: 562 RILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL-NHNQDIVTAFVYDSTC------ 612
            +L  S  G+AY      L        G+A+  ++ L N  + I T              
Sbjct: 591 PVLFFSDQGQAYKEKVWRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDETSWDTL 650

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLL 671
            ++  ++ GN    + S+     R GK  +K+   + +  V       +V +     + +
Sbjct: 651 DVMFATASGNVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCI 710

Query: 672 IFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-------- 721
            F ++ +     R   GVR  +        VI   I             Y +        
Sbjct: 711 RFPVEDVRVFKGRDSTGVRGINL--AQDDKVISMAILNAFDASPEERAGYLKMRRAVIGD 768

Query: 722 --------------------------------------------SENDLLGWLGK-RGGV 736
                                                         +    +    RGG 
Sbjct: 769 AGEAEAEPAEAEEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGK 828

Query: 737 GSLVPKGFPRSGKFLSS 753
           G    +   R+G  ++S
Sbjct: 829 GITAMRVNARNGNLVAS 845



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 63/230 (27%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G +R  K             A+    GD +           +LL +  G+   
Sbjct: 652 VMFATASGNVRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCIR 711

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------------------------ 610
            P  ++   +G        I+L  +  +++  + ++                        
Sbjct: 712 FPVEDVRVFKGRDSTGVRGINLAQDDKVISMAILNAFDASPEERAGYLKMRRAVIGDAGE 771

Query: 611 ----------------------------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                                          +L +S +G        E   + R GK   
Sbjct: 772 AEAEPAEAEEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGIT 831

Query: 643 KVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687
            +    +   +     V   D + +V    +L+   +D I  + R  +GV
Sbjct: 832 AMRVNARNGNLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGV 881


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 243/785 (30%), Positives = 403/785 (51%), Gaps = 45/785 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +++  + + E ++ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +++P+ S E+LLE     I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+    I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAI 298

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 299 GGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDG-VPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D
Sbjct: 358 LSIDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    +   Q DAIL L+LR L  LE  +I  E   L A  + ++ +L   ++Q
Sbjct: 418 EARAGLMELLDVDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I+ E+ E+ + F        RRT        D     + +I +E + V I+  G+  
Sbjct: 478 RAIISAELGEIVDKFGDE-----RRTRIL---PFDGEMSMEDLIPEEDVVVTITRDGFAK 529

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  RS K     +     +  D ++      T + +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ +  L+    ++ I        Y+    L++ + +G       S   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDADFLVLSTKRGLVKKTPLSLYNSPRSGG 649

Query: 639 KTFLKVSSEEK---MKLVVKVT---GDHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRL 689
              + +  +E     +LV   T    + + +V  + + + F  + DQ+  M R   GVR 
Sbjct: 650 IIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++  G  +++  ++  +    +      Y +           RG +G  V K     G
Sbjct: 710 MKFR--GDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERG 767

Query: 749 KFLSS 753
             + +
Sbjct: 768 DLVGA 772



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 19/226 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEG-----D 549
           +        L     E     V+ + RG ++           S  + A++ +E      D
Sbjct: 605 QPDEHIAQVLAIRTYEDADFLVLSTKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPD 664

Query: 550 SLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            L  A      + ++L+S DG+A  +T     L S       ++ +     + ++++  V
Sbjct: 665 ELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGVRGM-KFRGDDELLSMEV 723

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAV 663
                 LL+V+  G A      E    +R   G    K+     + +  +V    + V V
Sbjct: 724 PRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGDLVGALVVRPDEDVMV 783

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           + E+ KL+  +   +   +R   GV      +G     I      G
Sbjct: 784 ITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSG 829


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/796 (32%), Positives = 427/796 (53%), Gaps = 61/796 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++N+ N ++    + + + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENLFNKDS----DTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+ID
Sbjct: 57  DLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L L+DN E S+E+L+++I GPDFPT GI +  ++ I+++
Sbjct: 177 IAVGMATNIPPHSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGI-IYGKKGIIDA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRIKIRAKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVR 294

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L 
Sbjct: 295 DESDREGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLN 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR+ V+ RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V+
Sbjct: 354 LFLTHRKTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVA 413

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E+
Sbjct: 414 KFGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           +E++  F              ++         + +I  E + V I++RG+I+        
Sbjct: 474 KEIRAKFDVP--------RITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYE 525

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K       A+   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A
Sbjct: 526 KQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKA 585

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI+L   + I+       +  +  L   +  G       SE       G   + +  
Sbjct: 586 VVNLINLQAEEKIMAIIPTSDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDE 645

Query: 647 EEKMKLVVKVT----------------------------GDHVAVVGENRKLLIFSIDQI 678
            +++   + V                             G  +  V +    + F + ++
Sbjct: 646 NDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKV 705

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            E+ R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG 
Sbjct: 706 REIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEVLSVSAKGIGKRTNAGEYRLQSRGGK 765

Query: 737 GSLVPKGFPRSGKFLS 752
           G +  K   ++ + +S
Sbjct: 766 GVICMKLTDKTKELIS 781



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 39/226 (17%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +  +   +       +  G ++           SV + A++  E D L  A
Sbjct: 593 QAEEKIMAIIPTSDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTA 652

Query: 555 LHAH---------TTD-----------------RILL-LSTDGKAYTLPAGNLLSGRGHG 587
           +            + D                 ++L  ++  G     P   +       
Sbjct: 653 IIVERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKVREIGRVS 712

Query: 588 EAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +  +     N ++V    + +   ++L VS+KG        E    +R GK  + +  
Sbjct: 713 RGVTAIKFKEKNDELVGAVVIENDEQEVLSVSAKGIGKRTNAGEYRLQSRGGKGVICMKL 772

Query: 647 EE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            +   ++  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 773 TDKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGV 818


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 445/749 (59%), Gaps = 25/749 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+ AL +
Sbjct: 477 FASP-----RRSPLVERAE-SKAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F + ++P +S+GKG ++ +         D  ++ ++  K    L ++ S 
Sbjct: 651 AMSNVGRMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 710 KRKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/771 (33%), Positives = 417/771 (54%), Gaps = 37/771 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM- 61
           +DN+ ++       +K V +  +++E YL Y++S I  RA+P+ RDG KPVHRRI++AM 
Sbjct: 1   MDNLLDNTI-----IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMK 55

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL   A +KK A+IVGEV+G  HPHGD ++YD+LVR+AQ F  R  L+ GQGNFG+I
Sbjct: 56  HNLGLTSNAKYKKCAKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSI 115

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEA+MT+V E +L  +++D VDF   Y+  + EP + P++FPNLL NG++
Sbjct: 116 DGDKAAAMRYTEAKMTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSN 175

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMATSIP H + E+ +A +  I+NP+  IE +L  I GPDFPTGGI +  R+ I+E
Sbjct: 176 GIAVGMATSIPPHRLDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGI-IHGRQGIIE 234

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y+ GRG  ++RA+  VE+  +    IVV EIPYQV K+RL E+I  L   K +  + ++
Sbjct: 235 AYKTGRGRIKIRAKVHVEKT-KTKDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEV 293

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES +D   ++    R    ++++  ++  S MET F + +  +  GR P++  L  +L
Sbjct: 294 RDESDKDGMRLVIELKREAMSEIVLNHLYKSSAMETTFGIILLAIE-GREPKIFTLLELL 352

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
             +++HR+ ++ RR  F ++    RV IL+G  IA  NIDEI+A+IR  + P+      +
Sbjct: 353 DIFISHRKTIVIRRIIFELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELM 412

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           SRFSLTE Q  AIL +RL+ L  LE  +I++E   L+A   +++S+L S  +    I  E
Sbjct: 413 SRFSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSEDKINGVIKEE 472

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + EV++ FS        R T  E      A   + +I  E + V +S+RG+++       
Sbjct: 473 LLEVQKQFSSP------RRTLIE--ENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLKTY 524

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
                      + +  + D ++    A+T D I+ ++  G+ Y L    +        G+
Sbjct: 525 EKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAIGK 584

Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           A+  LI L   + I+T      ++    L+  +  G       SE       G   + + 
Sbjct: 585 AVVNLIGLQDGEKIMTTITTSDFNEDKSLVFFTKNGIVKRTNLSEYKNIRNNGVRAINLD 644

Query: 646 SEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            ++++     +      + +  +  + + F+ D I ++ R  +GV    +K    S +  
Sbjct: 645 EDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDIGRVARGVIGIKFKVANDSVIAA 704

Query: 703 FKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             I  +    +  +     +           RGG G +  K   ++GK +S
Sbjct: 705 TTIKGDEDKLLSISELGIGKQTLAGSYSTINRGGKGVIAMKLTNKTGKLVS 755



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             +  +           E + + V  +  G ++              + A++  E D L 
Sbjct: 592 LQDGEKIMTTITTSDFNEDKSL-VFFTKNGIVKRTNLSEYKNIRNNGVRAINLDEDDELI 650

Query: 553 IALHAHTTDRILLLSTD-GKAYTLPAGNLLS-GRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            A    ++ + L ++T  G+     A ++   GR     I +   + ++  I    +   
Sbjct: 651 SASIIDSSVKELFIATKEGQCIRFAADSIRDIGRVARGVIGIKFKVANDSVIAATTIKGD 710

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVG 665
             KLL +S  G              R GK  + +    K   +  V+ V      + V+ 
Sbjct: 711 EDKLLSISELGIGKQTLAGSYSTINRGGKGVIAMKLTNKTGKLVSVLSVNDSNMDLMVLT 770

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
            + K++   ++ I E  R   GV++ S  +         
Sbjct: 771 TSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKVAFASI 809


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/746 (34%), Positives = 393/746 (52%), Gaps = 60/746 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S      ++  +++   +   YL YA+S I  RA+PD+RDG KPVHRRI++AM + G D 
Sbjct: 3   STIPTPSDISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGN+G++DGD  AA
Sbjct: 63  TKPYKKSARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ + AE +L  +D++ VDF+  Y+E   EP V P+KFPNLL NG  GIAVGMA
Sbjct: 123 MRYTEARLAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP+HN+ E+ +A  A IDNPEI+I++L++ + GPDFPTG +I+  R  I  +Y  GRG
Sbjct: 183 TNIPTHNLGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALIL-GRSGIRSAYHTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE+ +  W IVVTEIPYQV K++L E+IAE++  K +  + D+RDES  D
Sbjct: 242 SIVMRAKTDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRD 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    D+++  +F  + ++T F +NM  L+ G  P+++ L  I+  ++  R
Sbjct: 302 GVRVVIELKRDAVADVVLNQLFRFTPLQTSFGVNMLALN-GGRPELLDLKSIIAAFVRFR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420
            +V+ RR+ F +     R   L GL +A  NIDE+IA+IRN   P   +  M++R     
Sbjct: 361 EQVITRRTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPAL 420

Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                                + L+E Q  AIL+LRL  L  LE  +I  EL+ ++ +  
Sbjct: 421 DVAPLIQLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIR 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + ++L       + +  E+ ++K  F        RRTT  E+   +     + +I++E 
Sbjct: 481 HLLAILADRGLLLDILRGELVDMKARFGNP-----RRTTIEEL---EFEADVEDLIQRED 532

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V+++  G+I+                 S +  K  D++     A+T   +L  +  G 
Sbjct: 533 MVVIVTQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGM 592

Query: 572 AYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNA 623
            YTL    L  G     G+A+  L+ L     I T               +L  +S+G  
Sbjct: 593 VYTLKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGV 652

Query: 624 FIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                S+       G   +K+    E++      +  D V +     + + F + +I   
Sbjct: 653 RRNRLSDFANIRSNGLIAMKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVF 712

Query: 682 -SRG-KGVRLQSYKDGGISDVICFKI 705
             R   GVR     + G  +VI   I
Sbjct: 713 SGRTSTGVRGIKLVEDG-DEVIGMSI 737



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             +L I++   ++I+           L VS +G        E     R G+    +   E
Sbjct: 786 PQELFIEMQAAEEII-----------LTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGE 834

Query: 649 KMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV 700
           + K +  V      D V ++ +N +++   +  I    R  KGV L     D  +  V
Sbjct: 835 RNKAIAAVFPISETDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSV 892



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A ++R+     + + +         E S      L   M   E I + +S +G+ +   +
Sbjct: 755 ARQLRQAMGEPTDADEAPDVEAEPVETSLVLPQELFIEMQAAEEIILTVSEQGFGKRTSA 814

Query: 536 HSVDLSALHFKE---------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGR 584
           +   L+    +            ++        TD+++++S +G+   +P  +  L   +
Sbjct: 815 YEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMISDNGQVIRMPVHDIRLTGRK 874

Query: 585 GHGEAIQLLIDLNHNQDIVTA 605
             G     L  L  ++ +V+ 
Sbjct: 875 SKG---VTLFRLGPDERVVSV 892


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 244/764 (31%), Positives = 413/764 (54%), Gaps = 35/764 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +K   L   +++ +++YA+S I +RA+PD+RDG KPV RRI+H M+E+G      
Sbjct: 1   MEQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVGEV+GK HPHGD S+Y++LVR+AQ F  RY ++ G GNFG+IDGD AAA RY
Sbjct: 61  YKKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM++++  +++ +++D V+F   Y+ E++EP V P++FPNLL NGT+GIAVGMAT+I
Sbjct: 121 TEARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ E+ +A LA+  NP+I+I +L+E YI GPDFPTG  I+  + +I ++Y  G G  
Sbjct: 181 PPHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYIL-GKSAIKKAYETGNGLI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  + ++  G   I+V EIPY V K+RLIEK+AE +  KRI  + +IRDES  +  
Sbjct: 240 IMRAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + + P++++  +F L+ ++T F +N   L     PQ + L  ++  +L H+ E
Sbjct: 300 RIVIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNE-PQTLNLKQMITYYLDHQEE 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+++ ++  + R  IL+GL  A   ID II +IR        +  ++S F ++E Q
Sbjct: 359 VIKRRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSEFDMSERQ 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  ++L+ L  LE  +I++EL++LL     +  +L + ++    I  E+ ++K+ F+
Sbjct: 419 AKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDILENRERILAIIEAELLQLKDKFA 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT   E+ +       + +I  E I + ++  G+++                
Sbjct: 479 DK-----RRT---EIIQGTFDLEDEDLIPVEDIIISLTTNGYVKRMPVDTYKTQNRGGRG 530

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +  +   E D +   ++  T D +L  +  GK Y +   N+        G  +  L++L+
Sbjct: 531 IKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFGRTAKGLPVVNLLNLD 590

Query: 598 HNQDIVTAFVYDSTC-------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            ++ + +                L  V+  G        E     + GK  + +  ++++
Sbjct: 591 KDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIRQSGKIAIGLKEDDQL 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             V   TG+  + V   N KL+ F    + +M R   GVR  +   G +  +      EG
Sbjct: 651 VSVKLTTGNAQILVAASNGKLIRFKESDVRKMGRTASGVRGINVDGGHVIGMT--TDQEG 708

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  +   Y +           RGG G        ++G+ ++
Sbjct: 709 QFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTAKTGQLVA 752



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 501 EVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
           E  ++  +  ++ ++EK+      ++  G ++                A+  KE D L  
Sbjct: 593 EYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIRQSGKIAIGLKEDDQLVS 652

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                   +IL+ +++GK       ++   R  G     +  +N +   V     D   +
Sbjct: 653 VKLTTGNAQILVAASNGKLIRFKESDV---RKMGRTASGVRGINVDGGHVIGMTTDQEGQ 709

Query: 614 LLVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
            ++  S  G   +    +   + R GK    +++  K   +  +  V GD  + ++    
Sbjct: 710 FIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTAKTGQLVALRAVNGDEDLLIITSEG 769

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICE 707
            ++   +DQ+    R  +GVRL    +G  +S V   +  E
Sbjct: 770 IVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAE 810


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/769 (34%), Positives = 420/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP  +++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FSL+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ 
Sbjct: 416 FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS       RRT   E+  + ++   + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSSP-----RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEK 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE   N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDK 647

Query: 647 EEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++     V  +  H+ +       + F ++ + E+ R  +GVR     +         
Sbjct: 648 GDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +  +     +           RGG G +  K   ++G  + 
Sbjct: 708 ISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVG 756



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 14/207 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   +GD L  A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDKGDELVGA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++         ++ +    ++  +    + D + K
Sbjct: 655 KVVDNNAKHLLIASHLGIFIKFPLEDVREIGRTTRGVRGIKLNENDFVVGAVVISDDSNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVGVISVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K++  SI  I E  R   GV+L +  D
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLINTAD 801


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRTERGRKGSTLPRGL 736


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V         I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +   +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 476 AETY------GDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/757 (34%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  L  + V+ + LR   EE YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  V++   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A +AL+D+P++ +E+L+ ++ GPD+PT   I+     I + Y 
Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R RA + V         I++T +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +  VR+V+ P++  +D D LM  +F  +D+E  F +N+NVL +   P+V  L  +L 
Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR  +R+  +  R+ IL+ L+IA+LNIDE+I IIR  D+PK  +++RFS
Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++    I  E+ + 
Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +   +    +A  +Q +   E +TVV+S +GW+R  K H +D  +
Sbjct: 476 AETY------GDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+A+   +  L S R  GE I    ++   + +
Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD 659
               + +     L+ +  G  FI   +++++  + GK  L + +  K    KL+ +    
Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC---FKICEGLTWID 713
            +  +    ++L+FS++ +P++S+GKG ++      +     +++        +    + 
Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDSV 746


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/857 (30%), Positives = 411/857 (47%), Gaps = 116/857 (13%)

Query: 3   VDNISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            DN  +      E  +++ VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ A
Sbjct: 2   TDNSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILFA 61

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+GLD+   + KSARIVGEV+GK HPHG+ ++YD+LVRLAQ F  R PL+ GQGNFG+
Sbjct: 62  MNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFGS 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE+R+ +VA  +L  +D D VD+RD Y+    EP V P+KFPNLL NG 
Sbjct: 122 IDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNGA 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +A +DNPEI I++L + I GPDFPT G+I+  R  I+
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLIL-GRGGIL 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   +RAR  VE + +    +VV+EIPYQV K  LIEKIA+L+  K+I  + D
Sbjct: 241 SAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISD 300

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + DES  +   ++    R    D+++ +++  SD++T F  NM  ++ G  P+ + L   
Sbjct: 301 LWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAIN-GGRPESLTLKDF 359

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           +  + + R++V+ RR    +     R  +L GL IA  NIDE+I +IR    P       
Sbjct: 360 ISAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQL 419

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + L+E Q  AIL LRL  L  L   +I  EL
Sbjct: 420 MARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADEL 479

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + +  E  +  ++L S  +  + +  E++ +K+ F+             E+   +     
Sbjct: 480 NKIANEIREYLAILASRARVVDIVKGELQTIKDEFATPRK--------TEIVDIEGEVED 531

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I++E   V +S++G+I+          +      S +  ++ D +       T   +
Sbjct: 532 EDLIQREDCVVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPV 591

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  S+ G  Y +    L   S +  G+A+  L+ L  ++ I +              +L+
Sbjct: 592 LFFSSRGMCYRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELI 651

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE-NRKLLIFS 674
             +  GN      ++  +  R GK  +K+   + +  V     D   ++   N + + F 
Sbjct: 652 FATRSGNVRRNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFL 711

Query: 675 I-DQIPE-MSR-GKGVRLQSY-----------------------------------KDGG 696
           I D+I     R   GVR                                       ++  
Sbjct: 712 ISDEIRLFKGRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEETE 771

Query: 697 ISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKRGGV 736
            ++ +     E ++                     +  + + + +  +        RGG 
Sbjct: 772 DAEPVAEADAEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGK 831

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +      R+G+ L+S
Sbjct: 832 GIVAMVVNDRNGRLLAS 848



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 530 IRSLK-SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           IR  K   S  +  +   +GD +         D     S + +A  L   + L      E
Sbjct: 716 IRLFKGRDSTGVRGIRLGDGDEVISMAI---LDHFEA-SAEERAAYLKQASALRRSEETE 771

Query: 589 AIQLLIDLNHNQDIVTAFVYDST---------CKLLVVSSKGNAFIVEESEIIANTRKGK 639
             + + + +  +    A                 +L VSSKG        E   + R GK
Sbjct: 772 DAEPVAEADAEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGK 831

Query: 640 TFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             + +   ++   +     +   D + +V +  +L+   +D +    R  +GVR+  +K 
Sbjct: 832 GIVAMVVNDRNGRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRI--FKT 889

Query: 695 GGISDVICFK 704
                V+  +
Sbjct: 890 EAEEKVVSVE 899


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/851 (29%), Positives = 413/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+  
Sbjct: 478 TGLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I+          +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI------------DQI----------------PEMSRGK-GVR-------- 688
              K + F+               I                  +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 83/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/749 (35%), Positives = 444/749 (59%), Gaps = 25/749 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+ AL  
Sbjct: 477 FASP-----RRSPLVERAE-SKAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSH 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAVVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            +     K+L+ S  G  FI   +++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMASPETKVLMASDSGYGFICTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F + ++P++S+GKG ++ +         D  ++ ++  K    L ++ S 
Sbjct: 651 AMSNVGRMLVFPVSELPQLSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 710 KRKITLKPSDVDNYRGERARKGSQLVRGL 738


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 414/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   ++  
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++  F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 477 --KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D +++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K+  ++ +  V  +   
Sbjct: 593 SDTIVIKEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 TKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 143/443 (32%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM---LSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +      +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYNDKRRTQIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDN--L 454
           E    I  ED  K   +      +  V  I   + ++ R+          I+ +     +
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTIEDDYAEKII 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N  A EI ++ +        GR  +    +S  +K +    +
Sbjct: 544 SASTLDTMMIFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVSDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +   T + IL
Sbjct: 599 KEFLPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         +       + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + + + EK   VV        + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADEEKVAAIT 801



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 142/420 (33%), Gaps = 53/420 (12%)

Query: 283 IEKIAELIIAKRIPLLE--------DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           I++I ELI A     +            D  A  +  +   +   L+ + +        +
Sbjct: 385 IDRIIELIRASSDGTVAREQLIEKYGFTDIQARSILDMKLQRLTGLEREKIDNE---YKE 441

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +E        VL+       +    +L+    +  +   +    RM+ +   +   + ++
Sbjct: 442 IEALIKELREVLADNSKIYEIMKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEII 501

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           I Y N   +  I  ++ K +     R     N ++     ++ S   L+   I ++   +
Sbjct: 502 ITYTNKGYVKRIEASKYKAQ-RRGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKV 560

Query: 455 LAEKEK-------------IDSLLN---SGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
              +               + +++N     K     +  E    KEI   + +   ++T+
Sbjct: 561 YNIRAYEIPDLSKQSRGRLLSNIINLSEGEKVSDTIVIKEFLPEKEIVFITKNGLIKKTS 620

Query: 499 FCEVSRADKATLQQAMIEKEPITVVI--------------SNRGW--------IRSLKSH 536
             E    + + L    I+++   + +              ++ G+        IR     
Sbjct: 621 LGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRPTGRS 680

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           +  + A+  +EGD++  A+     +  +L ++ +G                G+ +  L  
Sbjct: 681 TQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKA 740

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                 +V+        +L+ ++S G       SEI    R   G   +KV+ EEK+  +
Sbjct: 741 SEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/756 (33%), Positives = 399/756 (52%), Gaps = 61/756 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KS
Sbjct: 16  GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+ +D++ VDF+DTY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 136 LTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R +
Sbjct: 196 LSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYATGRGSIVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+  
Sbjct: 255 VNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ G  P+VM L  +L+ +++ R EV+ RR
Sbjct: 315 LKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPEVMNLTDMLRAFVSFREEVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 374 TKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLIL 433

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+ + AE      +L+
Sbjct: 434 LIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I++E + V +S+
Sbjct: 494 SRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSH 545

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  KE D +     A+T   +L  S+ G  Y     
Sbjct: 546 SGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G  +  G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 606 RLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSD 665

Query: 631 IIANTRKGKTFLKV-SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
            +   R GK  +K+    +++  V      D V +   + + + FS+  +    SR   G
Sbjct: 666 FVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQSRNSVG 725

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           VR  +        +I   + E +    +   +Y + 
Sbjct: 726 VRGITM--AATDRIISMSVIEHVDASPAERAAYLKR 759



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV----TGDHVAVV 664
              +L V+  G        +     R  KG     VS   ++  +V        D + +V
Sbjct: 802 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGNDDQIMLV 861

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            +   ++   ++ I   SR  KGV + +  +G
Sbjct: 862 SDGGTVIRVPVNGIRFASRATKGVTIFNTAEG 893


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 414/763 (54%), Gaps = 31/763 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L   +V+++++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L F
Sbjct: 2   SNLLNNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA +KKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  EI     AL++NP I++ +++E+I  PDFPTGGII   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIF-GKKGIMDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  +E+ G     IV+ E+PYQV K+RLIE +A L+  K I  + +IRDES  D
Sbjct: 241 RIKVRAKTHIEKKGN-RDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRD 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + M+T F + M  +     P++  L  ILK ++ HR
Sbjct: 300 GMRVVIELKRDAISEIVLNNLFKQTSMQTTFGIIMLSILNQE-PRIFGLIDILKHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + ++ RR+ F ++    R  IL+GL  A   ID++I +IR        K  +VS F  +E
Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSEFDFSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  +I+ +RL  L  LE  +I++EL  L+   E ++S+L S       IA E  EV   
Sbjct: 419 IQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSEDVLHGIIAEEFDEVLTT 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT    +         + +I  EP+ V I++RG+I+          K   
Sbjct: 479 YTTK-----RRTE---IEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLASYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
              +A+   E D ++     +T D +L ++  G+ + L    +   S    G+A+  LI+
Sbjct: 531 KGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I +      +     L+  +  G       SE       G   + +   + +  
Sbjct: 591 LQADEQIQSIIPTTDFSEDKSLVFFTKNGIVKRTNLSEFSNIRSNGVRAIVLDDNDALIT 650

Query: 653 VVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EG 708
                    ++ +V +  + + F I++  E  R  +GVR   +K  G   V    I  + 
Sbjct: 651 AKIADKSIKYLFIVTKLAQCIKFEIEKTREQGRSTRGVRGIKFKHEGDEVVDANIIASDD 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +  A +   +  +     L  RGG G +  K   ++GK++
Sbjct: 711 QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYI 753



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 531 RSLKSHSVDLSALHFK-EGDSLKIA-LHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHG 587
           R     +  +  + FK EGD +  A + A     IL+++  G      AG   L+ RG  
Sbjct: 679 REQGRSTRGVRGIKFKHEGDEVVDANIIASDDQEILIVAEKGIGKRTDAGEYRLTNRGGS 738

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I + +     + IV   + D +  ++ ++  G    V+   I  ++R       V   
Sbjct: 739 GVIAMKMTAKTGKYIVGCLMVDESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK-G 797

Query: 648 EKMKLVVKV 656
           +++  + + 
Sbjct: 798 DEVVSISRC 806


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 241/773 (31%), Positives = 392/773 (50%), Gaps = 48/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 280

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 281 MRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQ 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 340 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+ E+   + 
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDELDEIVAKYG 518

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V ++  G+I+                
Sbjct: 519 D-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  L+   
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFA 630

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------- 647
             + I        YD    L++ +  G        E  +  + G   +++ +        
Sbjct: 631 PGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEPV 690

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDV 700
           +++         D + +V +    L F  D   +  M R   GV+   +++G      DV
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMDV 750

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +  + L  + + G  + +        L  R G G    +     G  + +
Sbjct: 751 VAAETSKDLLVVTNEG--FAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   ++ D I+L+S  G +    A +      GR     +Q +     ++ + + 
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA-GVQGMRFREGDELLDMD 749

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               +++  LLVV+++G A      E     R G     V   E     +  ++    D 
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQ 809

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++   ++++    R   GV L     G   ++I     E
Sbjct: 810 VMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 855


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/836 (29%), Positives = 413/836 (49%), Gaps = 104/836 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  ++V  + +   L++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  DF   
Sbjct: 1   MSTDSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF  RY LI GQGNFG++D D AAA RY
Sbjct: 61  YKKSARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE RM ++   +L  +D+D VD+   Y+  +  P V P++ PNLL NG +GIAVGMAT++
Sbjct: 121 TEVRMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+  A LA  D+P IS E L+++I GPDFPTGGI +  R  IV++YR G+G   
Sbjct: 181 APHNLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGI-IYGRSGIVDAYRTGKGRLH 239

Query: 252 VRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R ++ +E +      +    IV TEIPYQ  K++LIEKIAEL+  K++  + +IRDES 
Sbjct: 240 LRGKYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESD 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   +     R  + ++++ ++F+ + +E+ F +NM  L     P++M L  ++  ++ 
Sbjct: 300 KDGMRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVAL-DEGQPKIMTLRDLIAAFVR 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------- 417
           HR+EV+ RR+ F ++    R  +L+GL IA  NID II  I+     +            
Sbjct: 359 HRQEVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQ 418

Query: 418 -----------------------------------VSRFSLTENQVDAILNLRLRSLRKL 442
                                                 + L+ +QV+AIL+++L  L  L
Sbjct: 419 SGGVIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGL 478

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ +++ E   +LA   ++ S+L++  Q    I  E+ +++E      D G  R T    
Sbjct: 479 EQDKLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIRE------DFGDARKTQIVD 532

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           SR+D +  +  +I ++ + + +S  G+ ++         K      SA   K  D +   
Sbjct: 533 SRSDFS--RADLISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHM 590

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY---- 608
           +   T + +++ +  G+ + L    +   S    G  +  LI L+ ++ +          
Sbjct: 591 VVTSTHNNVMIFTDRGRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDA 650

Query: 609 --DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             +    +   ++ G    V+ S+       G   ++++  + +  V    GD  + +  
Sbjct: 651 KQNDNSYVFFATASGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFS 710

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQS---YKDGGISDVICFKI---------------- 705
              K + F+  +I  M R  KGVR        + GI D                      
Sbjct: 711 NEGKAIRFNESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDSQDDQDNDSVVAVS 770

Query: 706 --------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    +    + +  R + +        +  RGG G +  K   R+G+ + +
Sbjct: 771 RVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQA 826



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 40/238 (16%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
             + A           +  G ++ ++           L A+   +GD+L           
Sbjct: 646 VTEDAKQNDNSYVFFATASGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQD 705

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVTAFV-------------- 607
           I+L S +GKA       + +     + ++ + + L  NQ I                   
Sbjct: 706 IMLFSNEGKAIRFNESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDSQDDQDNDS 765

Query: 608 ------------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMK 651
                            ++L    +G       S+     R GK  + +     + E ++
Sbjct: 766 VVAVSRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQ 825

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +     D + ++ +   L+   + QI +  R  +GV L          ++   + EG
Sbjct: 826 ALAVTDADDIVLISDAGTLVRTPVGQIAQTGRNAQGVTLIRI--SQDESLVSIALVEG 881


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 250/793 (31%), Positives = 393/793 (49%), Gaps = 73/793 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EE +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM E+GL    
Sbjct: 2   SISEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L+ +D + V+F D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+  R  I E+Y  G+G 
Sbjct: 182 NIPPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKIL-GRSGIREAYTTGQGS 240

Query: 250 FRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++T++PYQ  K+ LIEKIAE++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    R   P +++ +++  + +++ F  NM  L   R  + + L   LK +L
Sbjct: 301 DRQGMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPER-LTLSRYLKVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D II++IR+       K  ++ RF 
Sbjct: 360 EFRVETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIERFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE ++I++E + L      +  +L   ++  + I  E  E+
Sbjct: 420 LSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADLQDILARRERILDIIESEAIEL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           KE        G  R T  E +  +       +I  E   ++++ +G+I+ +  ++ D   
Sbjct: 480 KERH------GSPRRTEIEHTEGELEDT--DLIANEKAIILVTEQGYIKRMPVNTFDAQN 531

Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 S    KE D +   L     D IL  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIPVASRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +   + I +      +     L++++  G     E S        G   + +   ++
Sbjct: 592 MLPIPKQERITSVVPVSEFSDDEYLVMLTKGGYIKKTELSAFSNIRANGLIAISLGEGDE 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V     D   ++G      + F  D  Q+  + R  +GV+      G   ++I   I
Sbjct: 652 LRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRGVKSMKL--GKKDELISMDI 709

Query: 706 ------------------------------------CEGLTWIDSAGRSYNRSENDLLGW 729
                                                + L  +      Y +        
Sbjct: 710 LPSAIVSSIAQLESEETDIEDEEVLETETEETTVENNQELAIMVITAGGYGKRVPVSQFR 769

Query: 730 LGKRGGVGSLVPK 742
           L  R G G +  K
Sbjct: 770 LQNRAGKGIIATK 782



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 91/279 (32%), Gaps = 51/279 (18%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSH 536
           ++  +   +  T  G        + + ++ T    + E   +   V+++  G+I+  +  
Sbjct: 572 LKAYQIPVASRTARGVPIVQMLPIPKQERITSVVPVSEFSDDEYLVMLTKGGYIKKTELS 631

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRG-- 585
           +        L A+   EGD L+    A   D I++ S  G A      +      GR   
Sbjct: 632 AFSNIRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATR 691

Query: 586 -------------------HGEAIQLLIDLNHNQDIVTAFVY------------DSTCKL 614
                                  +  +  L   +  +                 +    +
Sbjct: 692 GVKSMKLGKKDELISMDILPSAIVSSIAQLESEETDIEDEEVLETETEETTVENNQELAI 751

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLK------VSSEEKMKLVVKVTGDHVAVVGENR 668
           +V+++ G    V  S+     R GK  +       ++++E + L V    + + ++    
Sbjct: 752 MVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVGLQVVNEDNELMLITSRG 811

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            ++  +++ IP  SR   GVR+Q   D      +     
Sbjct: 812 IIIRQAVNAIPTQSRSATGVRVQRLDDEDAIAAVAIVPP 850


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/799 (33%), Positives = 430/799 (53%), Gaps = 64/799 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NI N ++    +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENIFNKDS----DIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+ID
Sbjct: 57  DLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L L+D+ + S+E L+++I GPDFPTGGI +  ++ I+E+
Sbjct: 177 IAVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGI-IYGKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRVKIRAKTHIEK-KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L 
Sbjct: 295 DESDREGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLN 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR+ V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V+
Sbjct: 354 LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVA 413

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F LTE Q +AIL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E+
Sbjct: 414 KFGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           +E+K  F              ++         + +I  E + V I++RG+I+        
Sbjct: 474 KEIKSKFDVP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 525

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K       A+   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A
Sbjct: 526 KQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKA 585

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI+L  ++ I+       +D    L   +  G       SE       G   + +  
Sbjct: 586 VVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDE 645

Query: 647 EEKMKLVVKVTGDH-------------------------------VAVVGENRKLLIFSI 675
            +++   + V  D                                +  V +    + F +
Sbjct: 646 NDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPL 705

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            ++ E+ R  +GV    +K+     V    I  +    +  + +   +  N     L  R
Sbjct: 706 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 765

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG G +  K   ++ + +S
Sbjct: 766 GGKGVICMKLTDKTKELIS 784



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 42/229 (18%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     ++       +  G ++           SV + A++  E D L  A
Sbjct: 593 QADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTA 652

Query: 555 LHA--------------------HTTDRILL----------LSTDGKAYTLPAGNLLSGR 584
           +                        +D  L+          ++  G     P   +    
Sbjct: 653 IIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIG 712

Query: 585 GHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                +  +     N ++V    + +   ++L +S+KG        E    +R GK  + 
Sbjct: 713 RVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVIC 772

Query: 644 VSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
           +   +   ++  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 773 MKLTDKTKELISVVIVDESMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 821


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/772 (32%), Positives = 410/772 (53%), Gaps = 33/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +     +      V  V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSEAPDPDDPQAASRVDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   +A +KS+ IVGE +G  HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG+
Sbjct: 61  MHEMGVSSRSAHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+ ++E +L  +++D VDF+  Y++   EP V PS  PNLL NG+
Sbjct: 121 MDGDPAAAMRYTEARMSPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LIDNP+  +E L++++ GPDFPTGG  +  +++I 
Sbjct: 181 SGIAVGMSTNIPPHNLGEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGG-NIVGKDAIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  RVRA +   EV      IVVTEIPYQ  K+R++E+IAE +    I  + D
Sbjct: 240 SAYATGRGRLRVRADY---EVDPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIAD 296

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R  + D++   + + S +E+ F +    L     P+V+ L   
Sbjct: 297 LRDESDRNGVRIVVELKRGANVDVVENQL-LESHLESTFGVINLALVDDE-PRVLTLKET 354

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+ ++AHR+EV+ RRS F +     R  IL+G L A  N+D+++ +I++    D+ +  +
Sbjct: 355 LEHYVAHRKEVVRRRSQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTEL 414

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            S+F  +E Q   I+ ++L SL  +E  +I+SE +++ A  E++ ++L+S  +    I  
Sbjct: 415 RSQFDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQARIERLQTILDSEDELLTVIKD 474

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+RE+K  +        R+T+  E          + +I +E   VVI+   +I+ +   +
Sbjct: 475 ELREIKAEYDD-----DRKTSILEAEG---EVTHEDLIPEEDCVVVITEDDYIKRMPVDA 526

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            D              K+GD +     A++ D +L  +  G+ Y L    +   S    G
Sbjct: 527 FDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 586

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   +IDL  +++I        ++    L +V+  G        E       G    K+
Sbjct: 587 KSAVNIIDLGDDEEITAVVSTDDFEEDECLTMVTRNGYVKRTCVDEFENILSTGIIAAKL 646

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              + +  V        + V  E    + F   ++ EM R  +GVR    +DG  ++ ++
Sbjct: 647 EDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREMGRSARGVRGIDLQDGDKVAAMV 706

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    +      Y +           R G G +  K   R+G+  ++
Sbjct: 707 ATDDHDDRALLTVTENGYGKRTLLAEYSKQSRYGKGLIDIKTDDRNGRVATA 758



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                A +     E++    +++  G+++              + A   ++GD+L     
Sbjct: 598 DEEITAVVSTDDFEEDECLTMVTRNGYVKRTCVDEFENILSTGIIAAKLEDGDALVDVEV 657

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKL 614
              +  +++ +  G         +         ++  IDL     +      D      L
Sbjct: 658 TDDSGDLVVATEGGMTIRFDESEVREMGRSARGVRG-IDLQDGDKVAAMVATDDHDDRAL 716

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
           L V+  G       +E    +R GK  + + ++++   V         DH+ ++ E+ ++
Sbjct: 717 LTVTENGYGKRTLLAEYSKQSRYGKGLIDIKTDDRNGRVATAKAVREDDHLVIMSESGQI 776

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +      + ++ R  KGV++ +    G+ +V    + 
Sbjct: 777 MRIPAGDVSQVGRNTKGVKIMAL--DGVDNVASVTVV 811


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/746 (36%), Positives = 440/746 (58%), Gaps = 22/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           NT+  E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  
Sbjct: 2   NTINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG
Sbjct: 182 TDIPPHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA W  E        I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +
Sbjct: 242 SIKMRAVWKKEN-----GEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +R+V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ 
Sbjct: 357 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDE 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AILNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F
Sbjct: 417 QAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +        KA  +  M   EPIT+++S  GW+R  K H ++  AL +K
Sbjct: 477 ASP------RLSPLVERAEAKAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD+        +   ++ + + G++YTL   +L S R  GE +   + L     I    
Sbjct: 531 TGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-- 664
           + +    LL+ S  G  FI +  ++++  + GK  + +     +   + +      +V  
Sbjct: 591 IENENQSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVAL 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI-DSAGRS 718
               ++L+F +  +PE+S+GKG ++      + K+     V  F I E  + +  +  R 
Sbjct: 651 TSMNRMLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
                 D+  +  +RG  GS +P+G 
Sbjct: 711 VTLKPEDIRKFRAERGRKGSPLPRGL 736


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 254/755 (33%), Positives = 399/755 (52%), Gaps = 30/755 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E  L +    +K A
Sbjct: 12  LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD  AAYRYTEA+M
Sbjct: 72  KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +++ + +D VDF   +++   EP V P KFP LLANG+SGIAVGMAT++P HN+
Sbjct: 132 ARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNL 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +EI +A  A IDNP+I+I++L +YI GPDFPTGGII   ++ I ++++ GRG   VR R+
Sbjct: 192 REIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIF-GKKGIRQAFKTGRGKILVRGRF 250

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFP 315
            +E   +G   I+ TE+PYQV  + L+ KI EL   K I  +  + DE S      ++  
Sbjct: 251 NIEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +++  +F  + +++ F +    L  G  PQ + L  ++  ++AHR+EV+ RR
Sbjct: 311 LKRGAIAKVVLNQLFSKTALQSSFGVINLALV-GGRPQTLTLKQLVGYFVAHRQEVVTRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
             F ++  + R  IL+ L++A  NIDE+I IIR        K  ++ RFS  + Q  AI+
Sbjct: 370 VRFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQAIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE   ++ EL  L    E +  LL   ++    I  E  E+ E F      
Sbjct: 430 DMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGD---- 485

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------ 546
             RRT    VS   +    + +I+KE + V++SN G+I+ +   +        K      
Sbjct: 486 -DRRTDI--VSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAA 542

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D +     A T D I+ ++ +GKAY +    +   S    G  I+ L+ ++ +++I
Sbjct: 543 LVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEI 602

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            T      + S   LL+ ++ G    V+         +G   +K+   +K+   +  TG 
Sbjct: 603 TTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGK 662

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D + +V    + L  S  +I +  R   GV       GG       +I  G   + S   
Sbjct: 663 DELMLVTRQGQALRVSEAEIRDQGRASHGVIGIRL-SGGDELTGALRINNGKLLVMS-EN 720

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +  +        RG  G  V     ++G+ + 
Sbjct: 721 GYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 18/204 (8%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ +  G ++         + +  + A+   EGD L  A+     D ++L++  G+A  +
Sbjct: 618 LMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRV 677

Query: 576 PAGNLLSGRGHGEAIQLLIDLN-HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               +   R  G A   +I +     D +T  +  +  KLLV+S  G    V+ SE   +
Sbjct: 678 SEAEI---RDQGRASHGVIGIRLSGGDELTGALRINNGKLLVMSENGYGKRVDFSEFSPH 734

Query: 635 TRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R   G+    V+    E + L+     D +  +    K +   +  I  M R   GVR+
Sbjct: 735 GRGTGGQKVYTVTEKTGEVVGLLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRI 794

Query: 690 QSYKDGGI---SDVICFKICEGLT 710
              +        DV+  +  E +T
Sbjct: 795 LDIESPDQLIGLDVVAREDEESIT 818


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/755 (34%), Positives = 428/755 (56%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ +E++L  + +  VD+   ++   +EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +LE++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        +V+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYMEENGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R++ + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP +++RF 
Sbjct: 356 EWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L  E++K+  LL S ++    I  EI   
Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELAEERDKLQQLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  ++ ++  E +TVV+S +GW R  K H +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGE-AKALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+   +    +    + + + G+ ++  A  L S R  GE +     +   +  
Sbjct: 530 LSYKAGDAYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     K LV S  G  F+    ++++  + GK +L + +  K+     VT    D
Sbjct: 590 QHVIMAQDESKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG------ISDVICFKICEGLTWID 713
               +    ++L+F +  +P + +GKG +L +              V+          + 
Sbjct: 650 WCLSISNEGRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIKVG 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R+   + +DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRNMTLTADDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 250/832 (30%), Positives = 405/832 (48%), Gaps = 101/832 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I GPDFPTGGI +  R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHISGPDFPTGGI-IYGRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------------- 410
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGS 418

Query: 411 ----------------------DKPKP-----VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                 + PK           + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   +  
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIIDSR 533

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                  ++ +I ++ + + +S  G+ ++         K      SA   KE D +   +
Sbjct: 534 ---MDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLI 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              T   +L  +  G+ ++L    +   S    G  +  LI LN ++ + T         
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVE 650

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                                         +   ++ G    VE  +       G   + 
Sbjct: 651 ELSSKGETSADVTLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVG 710

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +K+       G   V +   + K + F+      M R  KGVR            +
Sbjct: 711 LEEGDKLVSARITNGSQEVMLFASSGKAIRFNETDARAMGRTAKGVRGMRLTADEFIKSL 770

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    + +    + +           RGG G +  K   R+G  + +
Sbjct: 771 VVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRA 822



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 80/226 (35%), Gaps = 18/226 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
           T  +V+      L  +   + P     +  G ++           S  L A+  +EGD L
Sbjct: 658 TSADVTLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKL 717

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT-AFVY 608
             A   + +  ++L ++ GKA           R  G   + +  + L  ++ I +   + 
Sbjct: 718 VSARITNGSQEVMLFASSGKAIRFNE---TDARAMGRTAKGVRGMRLTADEFIKSLVVIE 774

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVV 664
           D   ++L+    G        E     R G   + +     +   ++     + D + ++
Sbjct: 775 DDVREILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRATKVDSTDDIILI 834

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
            +   L+   ++ +    R  +GV L    KD  +  +   +  EG
Sbjct: 835 SDKGTLVRTPVEHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEG 880


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/749 (35%), Positives = 447/749 (59%), Gaps = 25/749 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 182 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 357 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 591 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGG--ISDVICFKICEGLTWIDSA 715
            +    ++L+F I ++P++S+GKG ++ +      K+G   ++ ++  K  + L ++ S 
Sbjct: 651 AMSSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 710 KRKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 241/773 (31%), Positives = 391/773 (50%), Gaps = 48/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           + E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 222 MCEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 280

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 281 MRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQ 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 340 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+ E+   + 
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDELDEIVAKYG 518

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V ++  G+I+                
Sbjct: 519 D-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  L+   
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------- 647
             + I        YD    L++ +  G        E  +  + G   +++ +        
Sbjct: 631 PGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEPV 690

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDV 700
           +++         D + +V +    L F  D   +  M R   GV+   +++G      DV
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMDV 750

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +  + L  + + G  + +        L  R G G    +     G  + +
Sbjct: 751 VAAETSKDLLVVTNEG--FAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   ++ D I+L+S  G +    A +      GR     +Q +     ++ + + 
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA-GVQGMRFREGDELLDMD 749

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               +++  LLVV+++G A      E     R G     V   E     +  ++    D 
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQ 809

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++   ++++    R   GV L     G   ++I     E
Sbjct: 810 VMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 855


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/758 (34%), Positives = 414/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   +++NP   ++++LE++ GPDFPTGGI +  +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGI-IYGKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + ++   + +I  EP+ V +S +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  N+ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   +  G       SE   N    G   + +   +++    VV 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +       + F ++ + E+ R  +GV      +            +    +  
Sbjct: 659 KNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  +S
Sbjct: 719 SENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
            +    ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 595 PNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++         +  +    ++  +    + D + K
Sbjct: 655 KVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V+ V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           K++  SI  I E  R   GV+L +  D  +
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLINTADKVV 804


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 413/758 (54%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+GL    A+KK
Sbjct: 10  KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A   ++ NP   ++K+LE++ GPDFPTGGI +  +  IVE+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGI-IYGKAGIVEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RFSL+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + ++   + +I  EP+ V +S +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  N+ 
Sbjct: 539 STYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   +  G       SE   N    G   + +   +++    VV 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +       + F ++ + E+ R  +GV      +            +    +  
Sbjct: 659 KNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  +S
Sbjct: 719 SENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 14/228 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
            +    ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 595 PNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++         +  +    ++  +    + D + K
Sbjct: 655 KVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHV--AVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V+ V  +++   ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLNLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           K++  SI  I E  R   GV+L +  D  +    C K  E      S+
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSS 822


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 254/830 (30%), Positives = 389/830 (46%), Gaps = 101/830 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E+ V  +++   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G   G  +
Sbjct: 4   SEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYT
Sbjct: 64  KKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + A ++L  +D+D VDF+  Y+    EP V P++FPNLL NG  GIAVGMAT+IP
Sbjct: 124 EARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A LA+IDNP I++E+L+  + GPDFPTG +++  +     +Y  GRG   +
Sbjct: 184 PHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMML-GQGGARSAYATGRGSIMM 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+   +EE       IV+T IP+QV KS L+EKIAE    KRI  + DIRDES  +   V
Sbjct: 243 RSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVRV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R    ++++  ++  +  ++ FP NM  +  G  P++M L  IL  ++  R EV+
Sbjct: 303 VIELKRDATAEVVLNQLWRHTPAQSSFPANMLAI-RGGRPEMMGLKDILSAFIIFREEVI 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------- 413
            RR  F +     R  IL GL++A  N+DE++ IIR    P                   
Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421

Query: 414 ----------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                     +    + + L+E QV AIL+LRL  L  L   +I  EL  L AE E++ S
Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    + +  +  E+  V++ F+       RRT     +        + +IE+E + V 
Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATP-----RRTLLAPAAD---GIDDEDLIEREEMVVT 533

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+          +      + +  K+ D +       T   +L  ST GK Y +
Sbjct: 534 VTMDGYIKRTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRM 593

Query: 576 PAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVE 627
               L  G     G  +  L+ L   + I T               ++  ++KG+     
Sbjct: 594 KVWRLPEGGPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNS 653

Query: 628 ESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MS 682
                     GK  +K      ++++  V  +   D V +     K + F+ D + E  S
Sbjct: 654 MDAFTNVPSNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQS 713

Query: 683 R-GKGVRLQSYKDGGISDVICFKI------------------------------------ 705
           R   GVR     +G   +VI   I                                    
Sbjct: 714 RNSTGVRGMRLAEG--DEVISLSILHRVGTTGDEREAYLRAAPWKDNENEPTLPAERMAE 771

Query: 706 --CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      Y +  +        RGG G        R+G  ++S
Sbjct: 772 LAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGPVVAS 821



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 41/229 (17%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------LKSHSVDLSALHFKEGDSL 551
           E    D   +  A++++    ++ + +G  IR            +S  +  +   EGD +
Sbjct: 671 EGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRGMRLAEGDEV 730

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                     R+     + +AY      L +        +  +      ++         
Sbjct: 731 ISL---SILHRVGTTGDEREAY------LRAAPWKDNENEPTLPAERMAELAA-----RE 776

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK----VTGDHVAVVGEN 667
             +L V + G   +    E     R G+    + +  +   VV          + +V + 
Sbjct: 777 QFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGPVVASFPATQAHQLMLVTDQ 836

Query: 668 RKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            KL+   +D +  + RG  GVRL             F + EG   + +A
Sbjct: 837 AKLIRMGLDSLRIIGRGSAGVRL-------------FDVAEGEHVVSAA 872


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/748 (37%), Positives = 438/748 (58%), Gaps = 23/748 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   L    E+ YL Y++  I +RA+P L DG KPV RRII+AMSE+GL   A +KKS
Sbjct: 8   DIEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI+GQGN+G   D  S AA RYTEA
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   AEL+L  V +  V++   ++    EP + P++ P++L NGT GIAVGMAT IP H
Sbjct: 128 RLAPFAELLLAEVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A L L+  P  ++ +L EY+ GPD+PT   I+    ++V+ Y  G+G  R+RA
Sbjct: 188 NLHEVAAACLHLLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRA 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
           R+ VE+       IVV  +P+QV  +R++E+IA+ + AK++P+L D+RDES  +   R+V
Sbjct: 248 RYRVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLV 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L P  R ++ + +M  +F  +D+E  + +N NV+ +   PQV  L  +L EW   R   L
Sbjct: 303 LVPHARRIEVETVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGTL 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R++ ++ R+++L GLLIAYLNIDE++AIIRNE+ PKPV+++RF L++ Q +AIL
Sbjct: 363 RRRFQYRLEKVEDRLQVLAGLLIAYLNIDEVVAIIRNEEVPKPVLIARFKLSDRQAEAIL 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L +LEE +I++E   L AE+++++ +L S  +  + +  E+    E F  +   
Sbjct: 423 ELKLRYLARLEETKIQAENKALAAERKRLEKMLGSESRIKDLLRQELLADTEKFGDA--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+   E      A  QQ+++  E ITVV+S +GW+R+ KS  V+ +AL ++ GDS +
Sbjct: 480 --RRSPIVERPS-ATALDQQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYR 536

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            +    +    + L + G++YTLPA  L S RG GE +   + +    + V   + +   
Sbjct: 537 ASARGRSNQPAVFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFVAILLAEPEE 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRK 669
             L+ S+ G  F+ +   +    R GK  L VS+  K    V V     D VAV     +
Sbjct: 597 FYLMASNMGYGFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGR 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI--CEGLTWIDSAGRSYNRSE 723
           LL+F +  +P ++RGKGV+L +        G   V    +    G   + +  R      
Sbjct: 657 LLLFPLRDLPFIARGKGVKLINISSTRFAQGQEAVRALAVISQGGALQVFAGRRHLTLKS 716

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            DL  + G+R   G  +P+GF +  + +
Sbjct: 717 EDLEPYQGERARRGLTLPRGFQQVERMV 744


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 413/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ ++ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  E  NL+++      +L+  ++    I  E+ ++K  F        RR+  
Sbjct: 478 TGLDQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI------------DQI----------------PEMSRGK-GVR-------- 688
              K + F+               I                  +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYKD-GGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                    G I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 82/251 (32%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L     IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GVRL +  +G
Sbjct: 874 AGVRLINLDEG 884


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/766 (30%), Positives = 406/766 (53%), Gaps = 33/766 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
           AH+ E++ RR+ F ++  + R+ IL+ L+ A  ++D +I II++    +  +  +++ + 
Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIATYD 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q  +I  ++L+ L  LE  +I  E DNL  +  +   +L     +   I  E++++
Sbjct: 418 FTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQDI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K+ +         R +   +   D     + +I  E   V ++N  +I+           
Sbjct: 478 KDKYDDP------RMSEVNLYE-DLDIDNEDLIPVEDTVVTVTNNPYIKRMNLDEYKLQN 530

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              V +S +   + D ++      T D  L  +  G+ + L    L SG  +  G  I  
Sbjct: 531 RGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVN 590

Query: 593 LIDLNHNQD---IVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++    +      T   +D+    L  V+ +G       +      + G   + +  ++
Sbjct: 591 YLNFQPGEKLASFTTIKDFDAEDHYLNFVTKRGIVKRTHINNYKNIRQNGIIAISLREDD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           ++ L     G  H+ +   N K + F    I ++ R   GVR     D    +++ F + 
Sbjct: 651 ELLLTKSTNGHKHILLGASNGKAIHFLETDIRQIGRTATGVRGMDIPDD--EEIVGFAVV 708

Query: 707 EGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +G+    +      Y +  +     L   GG G        ++GK 
Sbjct: 709 DGIEDDILVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKNGKL 754



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 13/212 (6%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T  +    ++     ++ RG ++    ++        + A+  +E D L +    +    
Sbjct: 604 TTIKDFDAEDHYLNFVTKRGIVKRTHINNYKNIRQNGIIAISLREDDELLLTKSTNGHKH 663

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKG 621
           ILL +++GKA      ++         ++ + D+  +++IV   V D     +LV++   
Sbjct: 664 ILLGASNGKAIHFLETDIRQIGRTATGVRGM-DIPDDEEIVGFAVVDGIEDDILVITENR 722

Query: 622 NAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
                  +E       GK    ++      K+K + KVT D  + VV      +   IDQ
Sbjct: 723 YGKPTSITEYRLQNTGGKGVKTLNVTHKNGKLKTLRKVTNDEDIIVVSHRGITIRMPIDQ 782

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           I +  R   GVR+ + K       I     + 
Sbjct: 783 ISQTKRATQGVRIITLKGDQKVSTIAIVDHQD 814


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 409/760 (53%), Gaps = 31/760 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++ L    +  +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  
Sbjct: 2   NDLLDNSEINDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA +KKSARIVG+VIG+ HPHGD SVYD+LVR+AQPF  R PL+ GQGNFG++DGD+AAA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ +++D VD  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  E+  A + L+DNP  S+  ++++I  PDFPTGG  +  ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPNEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGG-TIYGKKGILDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             RVRA+  +E+       IV+ E+PYQV K+RLIE IA+L+  K I  + +IRDES  +
Sbjct: 241 RIRVRAKTHIEK-KSNKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ +++  ++MET F + + +    + P+V  L  +L  ++ HR
Sbjct: 300 GIRVVIELKRDAMSEIVLNNLYKSTNMETTFGI-IMLSVFNQEPRVFTLLEMLGHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+ F ++    R  IL+GL  A  +I+ II +IR     +  K  ++  F  + 
Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEEFGFSP 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I++EL  +L   E ++S+L S +     I  E  E+ E 
Sbjct: 419 IQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESILRSEEVLKGIIKEEFVELVEQ 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHS 537
           ++             ++         + +I  EP+ V IS+RG+I+ +            
Sbjct: 479 YNIP--------RVTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRVPLAAYEKQIRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++     +T D ++ ++  G+ + L    +   S    G+A+  LI+
Sbjct: 531 KGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSRTAKGKAVVNLIN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I +      +D    L+  +  G       +E       G   + +  ++ +  
Sbjct: 591 LEADEKIRSIIPTTDFDEKKSLVFFTQNGIVKRTALNEFSNIRSNGVRAIVLDEDDALIT 650

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
               T +  ++ +V +  + + F ID+  +  R  +GVR   +K +G +         + 
Sbjct: 651 AHIATEETKYLFIVTKFAQCIKFEIDKTRDQGRSTRGVRGIKFKIEGDVVVDANIIKSDE 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              +  + +   +        L  R G G +  K   ++G
Sbjct: 711 EEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTG 750



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 18/210 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     ++ +     +++   V  +  G ++    +         + A+   E D+L  A
Sbjct: 592 EADEKIRSIIPTTDFDEKKSLVFFTQNGIVKRTALNEFSNIRSNGVRAIVLDEDDALITA 651

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
             A    + L + T  K        +   R  G + + +      +  +  +    +   
Sbjct: 652 HIATEETKYLFIVT--KFAQCIKFEIDKTRDQGRSTRGVRGIKFKIEGDVVVDANIIKSD 709

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGD-HVAVVG 665
             ++L+VS KG        E     R G   + +    K    +   V V     +  + 
Sbjct: 710 EEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGTTVVGCVMVDETMDLMALT 769

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           +  K++   +  I +  R   GV +    D
Sbjct: 770 KAGKMIRVDMQTIAKSGRNTSGVYIVKGDD 799


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 241/773 (31%), Positives = 392/773 (50%), Gaps = 48/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 280

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 281 MRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQ 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ E
Sbjct: 340 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    +  +  +++   + E Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E ++L+ +    + +L S ++Q   +  E+ E+   + 
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDELDEIVAKYG 518

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V ++  G+I+                
Sbjct: 519 D-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  +  G+ Y L A  L  G     G+ +  L+   
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------- 647
             + I        YD    L++ +  G        E  +  + G   +++ +        
Sbjct: 631 PGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMANEETGEPV 690

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDV 700
           +++         D + +V +    L F  D   +  M R   GV+   +++G      DV
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREGDELLDMDV 750

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +  + L  + + G  + +        L  R G G    +     G  + +
Sbjct: 751 VAAETSKDLLVVTNEG--FAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   ++ D I+L+S  G +    A +      GR     +Q +     ++ + + 
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA-GVQGMRFREGDELLDMD 749

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               +++  LLVV+++G A      E     R G     V   E     +  ++    D 
Sbjct: 750 VVAAETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQ 809

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++   I+++    R   GV L     G   ++I     E
Sbjct: 810 VMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 855


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 249/834 (29%), Positives = 409/834 (49%), Gaps = 103/834 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E+V  +++   L++ YL YA+S I  RA+PD+RDGFKPVHRR+++AM  +  D+  A+
Sbjct: 1   MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RYP++ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RMT++   +L  +D+D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  +NP+IS E+L+ +I+GPDFPTGGI +  R  I+++YR G+G   V
Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHILGPDFPTGGI-IYGRAGILDAYRTGKGRLHV 239

Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E      V R    IV TE+PYQ  K++LIE+IAEL+  K+I  + +IRDES +
Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   +     R    ++++ ++F+ + +E+ F +NM  L  G+ P+++ L  ++  ++ H
Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------------- 410
           R+EV+ RR+ F +     R  +L+GL +A  NIDEIIA I+                   
Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGS 418

Query: 411 ----------------------DKPKP-----VMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                 + PK         + + L+  QV+AIL+++L  L  LE
Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E  +LL E   ++S+L    +    I+ E+ E+++ F        RRT   +  
Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIIDSR 533

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                  ++ +I ++ + + +S  G+ ++         K      SA   KE D +   +
Sbjct: 534 ---MDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLV 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              T   +L  +  G+ ++L    +   S    G  +  LI L+ ++ + T         
Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVE 650

Query: 610 ----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                                           +   ++ G    VE  +       G   
Sbjct: 651 ELSVKGETSSTDALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIA 710

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           + +   +K+       G   V +   + K + F+ +    M R  KGVR           
Sbjct: 711 VGLEEGDKLVSARITNGSQEVMLFASSGKAIRFNENDARAMGRTAKGVRGMRLTADEFIK 770

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +     +    + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 SLVVIEDDVREILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSARNGELVRA 824



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 18/210 (8%)

Query: 514 MIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              + P     +  G ++           S  L A+  +EGD L  A   + +  ++L +
Sbjct: 676 TQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSARITNGSQEVMLFA 735

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAF 624
           + GKA      +    R  G   + +  + L  ++ I +   + D   ++L+    G   
Sbjct: 736 SSGKAIRFNEND---ARAMGRTAKGVRGMRLTADEFIKSLVVIEDDVREILIACENGFGK 792

Query: 625 IVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE 680
                E     R G   + + +     ++    KV   D + ++ +   L+   +  +  
Sbjct: 793 RTFIDEFNTQNRGGGGVIAIKTSARNGELVRATKVEPEDDIILISDKGTLVRTPVQHVAS 852

Query: 681 MSR-GKGVRLQSY-KDGGISDVICFKICEG 708
             R  +GV L    KD  +  +   +  EG
Sbjct: 853 SGRNTQGVTLIRLSKDEKLVAMARVEHEEG 882


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/759 (32%), Positives = 403/759 (53%), Gaps = 31/759 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +EN+K V L   +   +L YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+    A K
Sbjct: 6   KENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD ++Y+S+VR+AQ +  RYPL+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++A  +L+ +++D +D+ D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP 
Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L++NP+ +   L+E I GPDFPTGG+++  +  I ++Y  G+G   VR
Sbjct: 186 HNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+V E+PY V K+RL+E+IA+L   KRI  + D+ DES  D   ++
Sbjct: 245 AKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ +++ L+ M+T F  NM  +  G VP+V+ L  IL+E+L H+  V+ 
Sbjct: 305 IDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+++  +  + R  IL+GL IA  +I+EII IIR+    D  K  ++  + L+E Q  A
Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIETYGLSEKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++R+  L  LE  +I+SE   L+A  E +  +L   ++    I  E+ EV+E F  + 
Sbjct: 424 ILDMRMVRLTGLERDKIESEYTELIALIEDMADILAKPERIHKIIETELLEVQEKFGDA- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT          +   + +IE+E I + ++++G+I+          +     +  
Sbjct: 483 ----RRTELLVGEV--LSLEDEDLIEEEDIVITLTSKGYIKRLPSSEFKSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++  +   T D +L  + +GK Y      +        G  +  L+ ++  +
Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLLGIDSGE 596

Query: 601 DIVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            +          +    L   +  G     +          G   + +   +++  V   
Sbjct: 597 TVQAVINVRGEAEDGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVT 656

Query: 657 TGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWID 713
            GD   ++G +    + F    +  M R   GVR    ++     VI    + E    + 
Sbjct: 657 NGDENIIIGTHMGYAVSFHEKDVRNMGRTAGGVRGIRLRENDY--VIGVDLLKEDSEVLI 714

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + Y +        +  RGG G        ++G    
Sbjct: 715 ITEKGYGKRTKASEYAIKGRGGKGIKTANITSKNGNLAG 753



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 20/242 (8%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
               +   E        +  G ++     +        L A+  KE D L      +  +
Sbjct: 601 VINVRGEAEDGLYLFFTTRLGTVKRTDVKAFSNIRSNGLKAIVLKENDELMSVSVTNGDE 660

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSS 619
            I++ +  G  Y +        R  G     +  I L  N  ++   +     ++L+++ 
Sbjct: 661 NIIIGTHMG--YAVSFHE-KDVRNMGRTAGGVRGIRLRENDYVIGVDLLKEDSEVLIITE 717

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKVTGD-HVAVVGENRKLLIFSI 675
           KG     + SE     R GK     +       +  +  V GD  + ++     ++ F++
Sbjct: 718 KGYGKRTKASEYAIKGRGGKGIKTANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNV 777

Query: 676 DQIPEMSRGK-GVRLQSYKDGG----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
             + +  R   GVR+    +      ++ V    I + +   +    ++   E+ L   +
Sbjct: 778 SAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDETEIVSEAFTTKESGLDDSI 837

Query: 731 GK 732
            +
Sbjct: 838 QE 839


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/724 (36%), Positives = 433/724 (59%), Gaps = 25/724 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           L+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDM 335
             +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L 
Sbjct: 356 AFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E++++  +L S ++  N +  E++      + +   G  R +  +     KA  +  M+
Sbjct: 416 KERDQLQGILASERKMNNLLKKELQ------ADAQAYGDDRRSPLQEREEAKAMSEHDML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y +
Sbjct: 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  
Sbjct: 530 DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +  
Sbjct: 590 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 649

Query: 694 -------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                  + G++ +        LT I    R       +L    G+RG  G+ + +G  R
Sbjct: 650 SAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQR 707

Query: 747 SGKF 750
             + 
Sbjct: 708 IDRV 711


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRAIWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+
Sbjct: 353 EWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILESERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 252/767 (32%), Positives = 408/767 (53%), Gaps = 32/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEM 64
            S  NT       ++++   ++  ++ YA+S I  RAIPD+RDG KPVHRRI++AM  + 
Sbjct: 2   TSEENTT--HKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDE 59

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     A+KKSA+ V   +G  HPHGD ++YD+LV++AQPF  RY L+ GQGNFG+IDGD
Sbjct: 60  GNTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGD 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEAR+T+ AE +L+ +D++ VDF   ++E   EP V PS+ PNLL NGT+GIA
Sbjct: 120 SAAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN+ E+C+   A IDNPE+S+E++++ +  PDFPTGG I+   + IV +Y+
Sbjct: 180 VGMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIM-GTDGIVNAYQ 238

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   +R    +EE  +G   IV+TEIPYQV K+ +IEKIA+L+ +K I  + DIRDE
Sbjct: 239 TGQGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDE 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S +D   V+    ++   ++++  ++  + +E+ F +    +   + P+++ L  +L+ +
Sbjct: 299 SDKDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKK-PKILSLAELLRHF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           +AHR +V+ RRS F ++  + R+ IL GLL A   ID +IA IR   +    +  +VS+ 
Sbjct: 358 IAHRVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSKL 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E Q +AIL ++LR L  LE+ +I  E  +L    +K+  +L+S +   + +  E  E
Sbjct: 418 GFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVIDKLTWILSSEENILSVVKTETSE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SL 533
           ++  ++        R T  + +          +I  E   V+++ + +I+          
Sbjct: 478 IRTAYADE------RRTQIDYTAN-TDFNVMDLIPDEQTLVMLTTQNYIKRVPLDLYRQQ 530

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           K     +  +  K+ DS+     A+T D +L  +  G+ Y L    +   S    G+AI 
Sbjct: 531 KRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRVYEIPEGSRTSKGKAIV 590

Query: 592 LLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L++L   +   ++    +D+   LL  + KG      +         G   + +   ++
Sbjct: 591 NLLNLTDEEVSAVIPMRDFDAEKNLLYATKKGRVGKFSQDLFSRPRTGGIIGITLLDGDE 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +  VV   G   V +     + L FS D++    RG  GV     K  G   V    + E
Sbjct: 651 LVDVVVTDGSTDVVLTTAFGQALRFSEDEVRATGRGTQGVIGIRLKFEG-DYVCALTLVE 709

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP-KGFPRSGKFLSS 753
               +    + + +           RG  G       F R GK +SS
Sbjct: 710 TQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKSIVANFER-GKVVSS 755



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 12/216 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A +     + E   +  + +G +         +  +  +  +   +GD L   + 
Sbjct: 597 DEEVSAVIPMRDFDAEKNLLYATKKGRVGKFSQDLFSRPRTGGIIGITLLDGDELVDVVV 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
              +  ++L +  G+A       +    G G    + I L    D V A     T  LL+
Sbjct: 657 TDGSTDVVLTTAFGQALRFSEDEV-RATGRGTQGVIGIRLKFEGDYVCALTLVETQYLLM 715

Query: 617 VSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           ++ KG     E  E   + R  +            + +  +     D V +      +L 
Sbjct: 716 ITDKGFGKRTEFEEFRGHGRGTQGVKSIVANFERGKVVSSLAVSDDDQVIITTAGGVVLR 775

Query: 673 FSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
            S   I    RG KGVR+     G     +     +
Sbjct: 776 TSASDISIQGRGTKGVRVIRVDSGDKVTSVAIVPPD 811


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/748 (35%), Positives = 441/748 (58%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 5   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 65  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 125 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+
Sbjct: 185 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 245 GSIKMRAVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 299

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 300 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E
Sbjct: 360 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + 
Sbjct: 420 AQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKA 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L +
Sbjct: 480 FASP-----RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSY 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD      +  +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 534 RAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQV 593

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    + 
Sbjct: 594 LMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLV 653

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAG 716
            +    ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  
Sbjct: 654 AMSSVGRMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGK 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R      +D+  + G+R   GS + +G 
Sbjct: 714 RKITLKPSDIDNYRGERARKGSQLVRGL 741


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/743 (34%), Positives = 397/743 (53%), Gaps = 61/743 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S+   ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KS
Sbjct: 16  GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V +V+GK HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+VA  +L+ +D+D VDF++TY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 136 LTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C  A+A+IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R +
Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGK 254

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+ G     I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+  
Sbjct: 255 VNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIE 314

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + ++T F  NM  L+ G  P+++ L  +LK +++ R EV+ RR
Sbjct: 315 LKRDAVADVILNQLYRFTPLQTSFGANMVALN-GGKPELLTLTDMLKAFVSFREEVITRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F ++    R  +L GL IA  NIDE+I +IR    P+                     
Sbjct: 374 TKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLIL 433

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         ++L+E Q  AIL LRL+ L  L   +I  EL+++ AE      +L+
Sbjct: 434 LIDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILS 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    +  E+  V++ F        RRT   E++        + +I++E + V +S+
Sbjct: 494 SRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSH 545

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +      S +  KE D +     A+T   +L  S+ G  Y     
Sbjct: 546 SGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 605

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G  +  G+A+  ++ L   + I T               ++  +++G     + S+
Sbjct: 606 RLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSD 665

Query: 631 IIANTRKGKTFLKV-SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
            +   R GK  +K+    +++  V      D V +   + + + FS+  +    SR   G
Sbjct: 666 FVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVG 725

Query: 687 VRLQSYKDGGISDVICFKICEGL 709
           VR  +  +     +I   + E +
Sbjct: 726 VRGITMAE--TDRIISMSVIENV 746



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 28/217 (12%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
              D+    +   + + + +  S+   IR            +SV +  +   E D +   
Sbjct: 681 EEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISM 740

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG-----RGHGEAIQLLIDLNHNQDIVT----A 605
                 D     S   +A  L              G  E I L  +    +  ++     
Sbjct: 741 SVIENVD----ASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYE 796

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV----TGD 659
           F+      +L V+  G        +     R  KG     VS   ++  +V        D
Sbjct: 797 FLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDD 856

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            + +V +   ++   ++ I   SR  KGV + +  +G
Sbjct: 857 QIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEG 893


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/849 (29%), Positives = 410/849 (48%), Gaps = 107/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +             
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE--------RL 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V  S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSYK----- 693
              K + F+                           D    +  GK GVR          
Sbjct: 710 NLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMR 769

Query: 694 ------DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DG I  +I F       GL  + +    Y +           +GG G++     
Sbjct: 770 GMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTG 829

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 830 ERNGDLVAA 838



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 51/249 (20%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGDSL
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN------------------------LLS 582
             A     +D I+L S  GKA     Y   +GN                        L  
Sbjct: 694 IGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPG 753

Query: 583 GRGHGEAIQLLID------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
           G+                 L  +  IV+   +         ++L  ++ G       ++ 
Sbjct: 754 GKYGVRPSGRGSGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADY 813

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R   G
Sbjct: 814 SRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAG 873

Query: 687 VRLQSYKDG 695
           V+L +  +G
Sbjct: 874 VKLINLDEG 882


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/799 (31%), Positives = 398/799 (49%), Gaps = 81/799 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +  E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   
Sbjct: 184 PPHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSIT 242

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  
Sbjct: 243 MRGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R   P +++ +++  + ++T F  NM  L  G+ P+++ L   L  +L  
Sbjct: 303 EGMRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGK-PELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R + + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR   +    K  ++ RF L+
Sbjct: 362 RIDTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E   LLA+   ++ +LN  ++    +  E +E+K+
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQ 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                     RRT         + T    +I  E   ++++ +G+I+ +  ++       
Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
               S    KE D +K  L     D I+  +  G AY L A  +   S    G  I  ++
Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIPIGSRIARGVPIVQML 593

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  ++ I +      + +   L++++  G       S        G   + ++  ++++
Sbjct: 594 PIPRDEKITSLVAVGEFSNDEYLVMLTKGGYIKKTALSAFNNIRSNGIIAISLNEGDELR 653

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQ--IPEMSRG-KGVRLQSYKDGGISDVICFKI-- 705
            V     D   ++G      + F  D   +  + R  +GV+    K     ++I   I  
Sbjct: 654 WVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPLGRATRGVKAMKLKPD--DELIGMDILP 711

Query: 706 ------------------------------------------CEGLTWIDSAGRSYNRSE 723
                                                      +G++ +    R Y +  
Sbjct: 712 SFIVASIPKLGGEETEIEEEENTTVEEVDDTESEEIATTEVEPDGVSILVITTRGYGKRV 771

Query: 724 NDLLGWLGKRGGVGSLVPK 742
                 L  R G G +  K
Sbjct: 772 PVSQFRLQNRAGKGIIATK 790



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++   +R L   +  + A+  K  D L             ++++  K      G      
Sbjct: 678 TDDKQLRPLGRATRGVKAMKLKPDDELI----GMDILPSFIVASIPKL----GGEETEIE 729

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK- 643
                    +D   +++I T  V      +LV++++G    V  S+     R GK  +  
Sbjct: 730 EEENTTVEEVDDTESEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIAT 789

Query: 644 -----VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG 696
                +S +  + L V    D + ++     ++   I  I   SR   GVR+Q   K+  
Sbjct: 790 KFKPHLSGDCVVALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDA 849

Query: 697 ISDVICFKIC 706
           I+ V    + 
Sbjct: 850 IAAVALVPLS 859


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEAEN 916


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/767 (33%), Positives = 417/767 (54%), Gaps = 31/767 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +++    +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E+G
Sbjct: 1   MQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 61  LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y+ 
Sbjct: 181 GMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ +L
Sbjct: 299 DREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ RF+
Sbjct: 358 NHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFT 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ EV
Sbjct: 418 LSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE FS       RRT   E          + +I  EP+ V +S +G+++ +   + +   
Sbjct: 478 KEQFSSP-----RRTEIQEAYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQN 529

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
              K        E D ++    A+T D +L ++  G+ Y L    +        G+AI  
Sbjct: 530 RGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE 648
           LI L  ++ I+       +     L   +  G       SE  +N    G   + +   +
Sbjct: 590 LISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGD 649

Query: 649 KMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     V  D  H+ +       + F ++ + E+ R  +GV      +           
Sbjct: 650 ELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNEDDFVVGAVVIS 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 710 DDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEAEN 916


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 241/839 (28%), Positives = 410/839 (48%), Gaps = 103/839 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++    +    VSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++
Sbjct: 5   NDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNW 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+AAA
Sbjct: 65  NSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RM ++A  +L  ++E+ V+F D Y+  + EP+V P++FP LL NG+ GIAVGMA
Sbjct: 125 MRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGMA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+++     L L+++PE  I++L++ +  PDFPTG   +     I   Y+ GRG
Sbjct: 185 TSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGA-TIYGLTGIRAGYQTGRG 243

Query: 249 GFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +R++  +E +G+      IVV EIPYQV KS+L+EKI EL+  K +  + ++RDES 
Sbjct: 244 RVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDESD 303

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R  + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L 
Sbjct: 304 KDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQ-PRLLNLKQILNEFLR 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR--- 420
           HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+     D  +  ++ R   
Sbjct: 363 HRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAWQ 422

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + L++ Q  AIL + LR+L  L++ +I
Sbjct: 423 SALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQDEI 482

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E  +L+     +  +L   ++    I  E+ E++  F        RR+        D 
Sbjct: 483 VKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDE-----RRSEINPFGGGDI 537

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
           A   + +I    + V +++ G+I++         K       A   K+ D ++    A+T
Sbjct: 538 AD--EDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANT 595

Query: 560 TDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++  +  G+ + +    L  G     G  I  +I L+  + +        +     +
Sbjct: 596 HDYLMCFTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFPEDEYV 655

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
              ++ G    V+ S     + KG   + +   + +  V K +G   + +     K + F
Sbjct: 656 FFATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRF 715

Query: 674 S-------------IDQIP---------------EMSRGKGVR----------LQSYKD- 694
           +              + +                 +   KGVR               + 
Sbjct: 716 NEYWAGGAGDEDEAENDVSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGGLRGMRLPEN 775

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G I  ++  +I   L  + +    Y +           +GG G +      R+G+ + +
Sbjct: 776 GRIVSLLTAEIGSDLQVLTATQNGYGKRTPIADYTRKGKGGQGIIAIDTGERNGELIGA 834



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 81/247 (32%), Gaps = 49/247 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +      A L      ++      +  G ++ ++  +        + A+  KEGDSL
Sbjct: 632 IQLDDGEKVSAILPVREFPEDEYVFFATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSL 691

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAG-------------------------------NL 580
                   +  I+L S  GKA                                     NL
Sbjct: 692 VGVAKTSGSSDIMLFSNLGKAIRFNEYWAGGAGDEDEAENDVSGSLQQDEEDGGETEFNL 751

Query: 581 LSGRG-----HGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIA 633
            + +G      G      + L  N  IV+    +  S  ++L  +  G       ++   
Sbjct: 752 QTNKGVRPSGRGSGGLRGMRLPENGRIVSLLTAEIGSDLQVLTATQNGYGKRTPIADYTR 811

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             + G+  + + + E   ++   V V+  D + ++     L+   ++Q+ E  R   GVR
Sbjct: 812 KGKGGQGIIAIDTGERNGELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVR 871

Query: 689 LQSYKDG 695
           L +  +G
Sbjct: 872 LINLDEG 878


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 252/849 (29%), Positives = 410/849 (48%), Gaps = 107/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +             
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE--------RL 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V  S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSYK----- 693
              K + F+                           D    +  GK GVR          
Sbjct: 710 NLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMR 769

Query: 694 ------DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DG I  +I F       GL  + +    Y +           +GG G++     
Sbjct: 770 GMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTG 829

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 830 ERNGDLVAA 838



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 52/278 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGDSL
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN------------------------LLS 582
             A     +D I+L S  GKA     Y   +GN                        L  
Sbjct: 694 IGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPG 753

Query: 583 GRGHGEAIQLLID------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
           G+                 L  +  IV+   +         ++L  ++ G       ++ 
Sbjct: 754 GKYGVRPSGRGSGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADY 813

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R   G
Sbjct: 814 SRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAG 873

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           V+L +  D G + V   ++ E  T  D        S  
Sbjct: 874 VKLINL-DEGETLVSLERVAEEETETDMPETEAGTSPE 910


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 257/835 (30%), Positives = 403/835 (48%), Gaps = 114/835 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM EMGL     ++KSA +V
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD ++YD+LVR+AQ +  R  LI GQGN+G+IDGD  AA RYTE R+ ++
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++ +L  +D++ VDF++ Y+  + EPVV P+ FPNLL NG+ GIAVGMAT+IP HN+ E+
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +ALIDNP I++ +++E I GPDFPTG I++  +  I  +Y  GRG   +R +   E
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILL-GKAGIQSAYSTGRGSLLMRGKVHTE 265

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +      I+VTE+PYQV K+ +IEK+AEL+  KRI  + DIRDES  +   V+    R 
Sbjct: 266 TIRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRD 325

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              D+++  ++  + ++T F  NM  L+ G  P+ + L  +L  ++A R +V+ RR+ + 
Sbjct: 326 ASADVILNQLYRFTPLQTSFGANMVALN-GGKPEQLTLMDMLSAFVAFREDVVNRRTKYL 384

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------- 417
           ++    R  +L GL IA  NIDE+I +IR    P                          
Sbjct: 385 LRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDD 444

Query: 418 -------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     + L+E Q  AIL+LRL+ L  L   +I  EL+ + AE +    +L+S  +
Sbjct: 445 PRHRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTR 504

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+  +++ F+       RRT   E+S        + +I +E + V +S+ G+I
Sbjct: 505 VMQIIKDELTAIRDEFATP-----RRT---ELSEGAADLEDEDLIPREDMVVTVSHGGYI 556

Query: 531 RS--------LKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +          +      S +  K + DS+     A+T   +L  S+ G  Y      L 
Sbjct: 557 KRVPLSVYRSQRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLP 616

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
             + +G G+A+  L+ L  N+ I +     +         ++  +++G     + S+   
Sbjct: 617 LTTPQGRGKALVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTN 676

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRL 689
             R GK  +K+  E+   L V      D V +   + + + F    +     R   GVR 
Sbjct: 677 VNRNGKIAMKLDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRG 736

Query: 690 QSYKDGGISDVICFKI--------------------CEGLT------------------- 710
            S   G    V+   I                     EG T                   
Sbjct: 737 ISL--GKSETVVSMAILRHVDASAEERATYLKMRRAVEGDTNGESDSDEEAVADVAIDQE 794

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV--PKGFPRSGKFLS 752
                       +  +   Y +  +        RGG G          + G  ++
Sbjct: 795 RYAELGAREEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVA 849



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 76/276 (27%), Gaps = 74/276 (26%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEG-DSLKI 553
           E   +      +    +    +  + RG +R  K             A+   +  DS+  
Sbjct: 637 ERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMKLDDEQDSILG 696

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR----------GHGEAIQLLIDL----- 596
                  D +LL ++ G+    P  ++   +GR          G  E +  +  L     
Sbjct: 697 VATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVVSMAILRHVDA 756

Query: 597 -----------------------NHNQDIVTAFVYDSTCK---------LLVVSSKGNAF 624
                                  + +++ V     D             +L VS  G   
Sbjct: 757 SAEERATYLKMRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAREEMILTVSEYGYGK 816

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG------DHVAVVGENRKLLIFSIDQI 678
                E   + R GK      +    KL   V G      D + +V +  +++   +D I
Sbjct: 817 RSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGI 876

Query: 679 PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               R  G             V  F+  +G   +  
Sbjct: 877 GMKGRATG------------GVTIFRTADGERVVSV 900



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 496 RTTFCEVSRADKATLQQ---AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---EGD 549
            +   E + AD A  Q+    +  +E + + +S  G+ +   S+    S    K     D
Sbjct: 778 ESDSDEEAVADVAIDQERYAELGAREEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATD 837

Query: 550 --------SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
                   +L         D++LL++  G+   +P   +   +G       +      + 
Sbjct: 838 TNRLDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGI-GMKGRATGGVTIFRTADGER 896

Query: 602 IVTA 605
           +V+ 
Sbjct: 897 VVSV 900


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 257/832 (30%), Positives = 388/832 (46%), Gaps = 99/832 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              +   ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  E G   
Sbjct: 24  PPPIENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVP 83

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G  ++KSA+IVG+V+G  HPHGD S+YD+L RLAQ +  R PLI GQGNFG++D D  A+
Sbjct: 84  GRPYRKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPAS 143

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ +VA  +L  +D+D V+F   Y+    EP V P++FPN+L NG  GIAVGMA
Sbjct: 144 MRYTEARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMA 203

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+  A  A +DNP ISI++L+  + GPDFPTG +I+  +    ++Y  GRG
Sbjct: 204 TNIPPHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALIL-GQSGARQAYHTGRG 262

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +R+R  VEE       IV+TEIPYQV KS L+EKIAE    KRI  + DIRDES   
Sbjct: 263 SIIMRSRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQ 322

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   PD+++  ++  +  +T FP NM  +  G  P+ + L  I++ ++  R
Sbjct: 323 GVRIVMDLKRDATPDVVLNQLWRHTPAQTSFPANMLAI-RGGRPETLNLRDIVESFVKFR 381

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------- 419
            EV+ RRS F +     R  IL GL+IA  N+DE++ IIR    P     +         
Sbjct: 382 EEVITRRSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRG 441

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               + L+E QV AIL+LRL  L  L   +I  EL  L     +
Sbjct: 442 EIESYIKLVEAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAE 501

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  +L +  + +  +  E   +   F+       RRT   E++ A      + +IE+E +
Sbjct: 502 LLEILGNRVRLYQVMVEEFDAILVEFATP-----RRT---EIAPAGDDIDDEDLIEREDM 553

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V +++ G+I+          +      S +  K+ D++       T   +L  S  GK 
Sbjct: 554 VVTVTHGGYIKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKV 613

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y      L  G  +  G  +  L+ L   + I T               ++  ++ GN  
Sbjct: 614 YRKKVWRLPEGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVR 673

Query: 625 IVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE- 680
                        GK  ++   +  +++  V  +T  D V +     K + F+   + E 
Sbjct: 674 RNSMDAFANVPTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREF 733

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLT----------------------------- 710
            SR   GVR    K  G  +VI   I +G                               
Sbjct: 734 QSRTSTGVRGILLK--GDDEVISLSILKGFDASTDERDAYLRAAPWKDNEADPTLSAERM 791

Query: 711 ---------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +      Y +  +        RGG G        R+G  ++S
Sbjct: 792 AEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERNGPVVAS 843



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 77/263 (29%), Gaps = 55/263 (20%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
                 GR       ++  +K T    + E E        V  +  G +R     +    
Sbjct: 624 GAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFANV 683

Query: 539 ---DLSALHFKEG--DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 A+ F E   D L         D +LL +  GKA    + ++   +         
Sbjct: 684 PTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVRG 743

Query: 594 IDLNHNQDIVTAFVYD-------------------------------------STCKLLV 616
           I L  + ++++  +                                       +   +L 
Sbjct: 744 ILLKGDDEVISLSILKGFDASTDERDAYLRAAPWKDNEADPTLSAERMAEFEAAEEFILT 803

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLI 672
           V + G        E     R G+    + + E+   VV       G+ + +V +  KL+ 
Sbjct: 804 VCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERNGPVVASFPAHNGEQLMLVTDQAKLIR 863

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD 694
            S+     + R   GVRL +  D
Sbjct: 864 LSVGDTRVIGRNSAGVRLFNVSD 886


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            +G+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PNGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/778 (31%), Positives = 395/778 (50%), Gaps = 36/778 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  + +   +   +  V L+  ++  YL YA+S I  RA+P++RDG KPVHRR+I+A
Sbjct: 1   MTDEENAGAVFGIHGKIDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     AF K AR+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+
Sbjct: 61  MFDGGYRPDKAFSKCARVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA RYTE +M  +A  +++ +DED VDF+D Y+    EP V PS+FPNLL NG+
Sbjct: 121 PGNDGAAAPRYTETKMAPLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGS 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ + AL  + +PE S E+LLE     I GPDFPTG  I+   
Sbjct: 181 VGIAVGMATNIPPHNLREVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQIL-GV 239

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + I ++YR GRG   +RA   +EE+ +G  C+VVTE+PYQV    L  KIAEL+   R+ 
Sbjct: 240 KGIQDTYRTGRGSITIRAVVSIEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGRVG 298

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + DIRDE S    + ++    R     +++ +++  + ++  F  NM  +    VP+ +
Sbjct: 299 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDN-VPRTL 357

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LDG +  W+ H+ EV+ RR+ FR++  + R  IL+G L A   +DE+IA+IR     D+
Sbjct: 358 ALDGFITAWVDHQIEVIVRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDE 417

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  + S   + + Q DAIL ++LR L  LE  +I  E D +  +  +  ++L    +Q 
Sbjct: 418 AREGLKSLLEVDDIQADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAILADSARQR 477

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           + ++ E+ E+ + F        RRT    +   D     + +I +E + + ++  G+I+ 
Sbjct: 478 SIVSEELTEIVDRFGD-----DRRTEI--MLGFDGDMSLEDLIPEEEMVITVTRGGYIKR 530

Query: 533 --------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LS 582
                          +     +  D +       T   +L  +  G+ Y   A  +    
Sbjct: 531 TRSDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEVQEAG 590

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
               G+ +  L+ L  +++I        Y+    L++ +  G        E   N   G 
Sbjct: 591 RDAKGQHVANLLALQPDEEIAEILDIRDYEVAQYLVLATRDGLIKKTALREYDTNRSGGI 650

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDG 695
             +K+  E+++   + V  D  + +V      + F+     +  M R   GV    ++  
Sbjct: 651 IAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPMGRSTSGVIGMHFRGD 710

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                      EG  ++ + G  Y +        L  RGG+G  V K     G  + +
Sbjct: 711 DSLLDASVVSDEGYVFVVTEG-GYAKRTAADQYRLQNRGGLGIKVAKLSDDRGDLVGA 767



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
           +        L     E     V+ +  G I+       D +      A+  ++ D L  A
Sbjct: 605 QPDEEIAEILDIRDYEVAQYLVLATRDGLIKKTALREYDTNRSGGIIAIKLRDEDELVSA 664

Query: 555 LHAHTTDRILLLSTDG---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           L       +LL+S  G   +           GR     I   +    +  ++ A V    
Sbjct: 665 LLVEEDSDLLLVSRKGMSIRFTATDEAMRPMGRSTSGVIG--MHFRGDDSLLDASVVSDE 722

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE--EKMKLVVKVTGDHVAVVGEN 667
             + VV+  G A      +     R G      K+S +  + +  ++    D V VV  +
Sbjct: 723 GYVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLSDDRGDLVGALIVEEDDEVLVVLAS 782

Query: 668 RKLLIFSIDQIPEMSR 683
            K++  ++ ++P   R
Sbjct: 783 GKVVRSAVAEVPAKGR 798


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 414/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ +A+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 60  MHELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 IDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   D  I  +I F        L  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 53/251 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A     +D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDEAADNENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDG 695
            GV+L +  +G
Sbjct: 874 AGVKLINLDEG 884


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/853 (28%), Positives = 412/853 (48%), Gaps = 111/853 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDDTIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 ADLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E+K  F             
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRK-------- 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +  ++ +  V K  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQIP-----------EMSRGKGVR------ 688
              K + F+                     D +             +S   GVR      
Sbjct: 710 NLGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRGS 769

Query: 689 ----LQSYKD-GGISDVICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                    + G I  +I F        L  + +    Y +           +GG G++ 
Sbjct: 770 GGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 829

Query: 741 PKGFPRSGKFLSS 753
                R+G  +++
Sbjct: 830 INTGERNGDLVAA 842



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 79/253 (31%), Gaps = 55/253 (21%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KE D L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCL 693

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID---------------- 595
                   +D I+L S  GKA         +G    E      D                
Sbjct: 694 VGVAKTGGSDDIMLFSNLGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDT 753

Query: 596 -----------------------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVE 627
                                  L  N  IV+   +   C     ++L  ++ G      
Sbjct: 754 AAISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTP 813

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683
            ++     + G+  + +++ E+   +V  T     D + ++     L+   +DQI E  R
Sbjct: 814 IADYSRKNKGGQGNIAINTGERNGDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGR 873

Query: 684 -GKGVRLQSYKDG 695
              GV+L +  +G
Sbjct: 874 AAAGVKLINLDEG 886


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/753 (34%), Positives = 398/753 (52%), Gaps = 66/753 (8%)

Query: 6   ISNSNTLVEEN-----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +S+S+TL  E+     ++ VS+   L   YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E        + KSAR+ G+ +GK HPHG+Q++YD+LVRLAQ F  R PLI GQGNFG+
Sbjct: 61  MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  AA RYTE R+ + A  +L  +D+D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A +ALID P++ IEKLL+YI GPDFPTG +I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALIL-GRSGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +R+R  +EE+ +    I+VTEIPYQV K+ +IE+IAEL+  KR+  + +
Sbjct: 240 QAYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAE 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES+ +   V+F   R    D+++ +++ +S ++T F  NM  L+ G+   +M L  +
Sbjct: 300 IRDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGKPA-LMTLHDL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
           L  ++A R EV+ RR+ F ++    R  +L GL IA  NIDE+IA IR    P       
Sbjct: 359 LTAFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREAL 418

Query: 414 ----------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                 K      + L+  Q  AIL+LRL+ L  L   ++  EL
Sbjct: 419 MTRDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D +  E      +L S ++    +  E+  VK  F              E++ A+     
Sbjct: 479 DKIAVEIRDYLDILASRERIRTIVKDELLAVKAEFGTPRK--------TEITDAEGDFED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + V +S+ G+I+          +      SA+  ++ D +     A T   +
Sbjct: 531 EDLIAREDMVVTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLV 616
           L  S+ G+ Y L    L   + +  G+A+  ++ L   + I +             +++ 
Sbjct: 591 LFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALPDEETWSRLQIMF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            ++ G     E S+     R GK  +K+   E +  V   T  D V +     + + F +
Sbjct: 651 STTGGTVRRNELSDFTNVNRNGKIAMKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPV 710

Query: 676 DQIPEMSRGK---GVRLQSYKDGGISDVICFKI 705
            ++    +G+   GVR    ++G    +I   I
Sbjct: 711 PEVRVF-KGRDSMGVRGIQLEEG--DRLISMAI 740



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVG 665
           +   +L +S  G        E     R GK  + ++  E+   +     V   D + +V 
Sbjct: 804 NEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERNGPLIASFPVEEADQIMLVT 863

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +  +L+   ++ I  + RG               VI F   E    +  
Sbjct: 864 DGGQLIRCPVNGIRIVGRGS------------QGVIVFNTAEDEKVVSV 900



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 81/280 (28%), Gaps = 31/280 (11%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           T  E   +  A   +    +  I    +  G +R  +             A+  +EG+++
Sbjct: 626 TEGERITSIMALPDEETWSRLQIMFSTT-GGTVRRNELSDFTNVNRNGKIAMKLEEGEAI 684

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    D +LL S  G+    P   +   +G        I L     +++  +    
Sbjct: 685 ADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRLISMAIIRHV 744

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----------------EKMKLVV 654
                 +++  A  ++ +  +  ++ G        E                 ++ + V 
Sbjct: 745 D----ATAEERAAYIKLANAVRRSQAGLENGAEEPETVADADAEEAVAAPADIDQARYVE 800

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWI 712
               +  +  + EN      S  +     RG KG+   +  +     +  F + E    +
Sbjct: 801 MSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERNGPLIASFPVEEADQIM 860

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                            +  RG  G +V        K +S
Sbjct: 861 LVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAE-DEKVVS 899


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/772 (32%), Positives = 409/772 (52%), Gaps = 31/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + +   +    V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSD-VPDPTDVEARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   ++ +KS+ IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MHEMGVTSRSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM  V+E +L+ +D+D VDF   Y++   EP V PS FPNLL NG+
Sbjct: 120 MDGDPAAAPRYTEARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LID+P+ ++E L+E++ GPDFPTG   +  R++I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGA-NIVGRDAIY 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y+ GRG  RVRA + VEE   G   IV+TE+PYQ  K+RL+E+IAE +    I  + D
Sbjct: 239 SAYKTGRGRIRVRAEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R  + +++   + + + +E  F +    L  G+ PQV+ L   
Sbjct: 299 LRDESDRDGVRIVVECKRGANVEVVKNKL-LENHLEKTFGVINLALVDGQ-PQVLSLKET 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L+E++AHRREV+ RRS + +   + R  IL+G L A  N ++++ +IRN    D  K  +
Sbjct: 357 LEEYIAHRREVVRRRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAAL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +  Q   I+ ++L SL  +E  +I+ E +++ AE E++ S+L S ++    I  
Sbjct: 417 QEAYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKD 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ +        RRT+  E          + +I +E + VV++   +++ +    
Sbjct: 477 ELSEIKDEYDD-----DRRTSIIEDQGT---VTHEDLIPEEEVFVVMTEDDYVKRMPISQ 528

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            D              KE D +     A+T D +L  +  GK Y L    +        G
Sbjct: 529 FDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI      D       + + +  G       SE       G     +
Sbjct: 589 KSAVNILDLDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVI 701
              +++  V    G   + +  EN   + F  D++  M R  +GV     + D  ++ ++
Sbjct: 649 QEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGVNGIDLQGDDAVAGLV 708

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +    +      Y +           R G G +  K   R+G   ++
Sbjct: 709 ATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTA 760



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      A +       +    + +  G+++       D      + A   +EGD L   
Sbjct: 598 DPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDV 657

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STC 612
                T  +++ S +G         + +   +   +   IDL  +  +      D     
Sbjct: 658 EVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGV-NGIDLQGDDAVAGLVATDEGDEQ 716

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            LL V+  G       SE    +R GK  + + + E+   V         D + ++ E  
Sbjct: 717 DLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTAKAVSADDQLVMMSERG 776

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           +++   +D+I  + R   GV +    DG     +
Sbjct: 777 QIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASV 810


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/742 (35%), Positives = 439/742 (59%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRSYNRS 722
           ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  R     
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRKITLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
            +D+  + G+R   GS + +G 
Sbjct: 717 PSDIDNYRGERARKGSQLVRGL 738


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 415/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+      + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 244/850 (28%), Positives = 407/850 (47%), Gaps = 112/850 (13%)

Query: 6   ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +++     +         VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM
Sbjct: 1   MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+S
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + E
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVRE 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  + 
Sbjct: 240 GYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L  
Sbjct: 300 ELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+           
Sbjct: 359 ILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDK 418

Query: 420 R---------------------------------------FSLTENQVDAILNLRLRSLR 440
                                                   + L+E Q DAIL + LR+L 
Sbjct: 419 LLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLT 478

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+   
Sbjct: 479 GLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS--- 530

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
           E++        + +I +  + V +++ G+I++         +       A   K+ D ++
Sbjct: 531 EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIE 590

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFV 607
               A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+    
Sbjct: 591 TLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
           +     +   +++G    V+ S       +G   + +   + +    +  G D + +   
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSN 710

Query: 667 NRKLLIFS----------------IDQIP------------EMSRGK-GVR--------- 688
             K + F+                  +I              +  GK GVR         
Sbjct: 711 LGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGL 770

Query: 689 -LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                  DG I  +I F       GL  + +    Y +           +GG G++    
Sbjct: 771 RGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINT 830

Query: 744 FPRSGKFLSS 753
             R+G  +++
Sbjct: 831 GERNGDLVAA 840



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEAEN 916


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 229/792 (28%), Positives = 384/792 (48%), Gaps = 70/792 (8%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T     ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G    
Sbjct: 11  QTSAGGRIETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 70

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F K AR+VGEV+G  HPHGD ++YD+LVRLAQP+V RYPLI GQGNFG+   D AAA 
Sbjct: 71  RGFSKCARVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFGSPGNDPAAAM 130

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM  +A  +++ + ED VDF   Y+    EP + PS+FPNLL NG++GIAVGMAT
Sbjct: 131 RYTECRMAPLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNGSAGIAVGMAT 190

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRL 245
           +IP HN++E+   A   +++P+ + E+L    +E + GPDFP G +IV  RE I ++YR 
Sbjct: 191 NIPPHNLREVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIV-GREGIEQAYRT 249

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG    RA   V+E  +G   +V+TE+PY V    L +KIA+L    ++  + D++D  
Sbjct: 250 GRGSITQRAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQGIADVKDNT 309

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S+   + ++    R     +++ ++   ++++T F  NM  L  G VP+ + +D  +  W
Sbjct: 310 SSRTGQQLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDG-VPRTLSIDQFISNW 368

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           + H+ +V+ RR++FR++  +    I +GL+ A   +D +IA+IR+    D  +  ++   
Sbjct: 369 VEHQIDVIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDARQGLIRLL 428

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q +AIL+++LR L  LE  +I   L  L      ++ +L +  +Q   +  E+ E
Sbjct: 429 EIDEIQANAILDMQLRRLAALERQKIIDRLAELELIIADLEDILANVARQRQIVGDELDE 488

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           +   +        RRT       AD     + +I  E + V I+  G+         R+ 
Sbjct: 489 IVAKYGD-----DRRTQII---AADGDLSMEDLIPDEELVVSITRGGYAKRTLANEYRTQ 540

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591
           K     +     +  D ++  +       +L  +T G+ Y + A NL        G  + 
Sbjct: 541 KRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRIKAYNLPEAARDAKGGHVA 600

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SE 647
            L+    ++ I        Y+    L++ +  G        +  +  + G   +     +
Sbjct: 601 GLLSFQPDESIAQVLAIRDYEQAPYLVLATRSGLIKKTRLGDYNSPRQAGVIAINFREDD 660

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG------- 696
           +++     V   D + +V    + + F  D   +  M R   GV    ++DG        
Sbjct: 661 DELIGAELVNSEDDILLVSRKGQAIRFRADDNQLRPMGRATSGVTGMKFRDGDSLLSMSV 720

Query: 697 -ISDVICFKICEGLT--------------------------WIDSAGRSYNRSENDLLGW 729
             ++ +  +I  GL+                                  + +        
Sbjct: 721 IRAEHVAAEIAAGLSEANEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYR 780

Query: 730 LGKRGGVGSLVP 741
           L  RGG+G    
Sbjct: 781 LQSRGGLGIKTM 792


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 388/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++Y +LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 277 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 515 GD-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 567 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 APDESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   +++     ++  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRND--DSLLAM 744

Query: 704 KICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  G +           + +        L  R G+G    +     G  + +
Sbjct: 745 DVVPGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +   ++  ++       DS   L VV+++G A  
Sbjct: 708 GMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 767 TAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SR-GKGVRLQSYKDGG 696
            R  +GV       G 
Sbjct: 827 GRNTQGVTFAKPDKGD 842


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 278/757 (36%), Positives = 442/757 (58%), Gaps = 18/757 (2%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    ++ +    + N    S+    E  YL YA+  I +RA+P + DG KPV RRI++A
Sbjct: 1   MSDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL   A  KKSAR +G+VIGK HPHGD + Y+++V ++QPF  RYPLISGQGNFG 
Sbjct: 61  MSELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGS 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             D  S AA RYTEA+++  A  +L  + +  VD++D ++    EPV  P++ PN+L NG
Sbjct: 121 PDDPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           T+GIAVGMAT IP HN+ E+ +  +AL+  P ++ ++L +YI  PD PT   I+ S E +
Sbjct: 181 TTGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDL 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++ Y+ GRG +++RA + V    +    +++  +PYQ+  +++IE+IA LI AK++P + 
Sbjct: 241 LQLYKTGRGSYKMRATYHV--DDKEKNLVIIDALPYQISGNKIIEQIANLINAKKLPWVT 298

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           DI DES      RIVL  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  L
Sbjct: 299 DIHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKSL 358

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EWL+ RR+ + RR  +R+  I++R+ IL GLLIAYL+IDE+I IIR E+ PK  +
Sbjct: 359 LTILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDPKAEL 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++R+ LTE+Q +AIL++RLR L +LEE ++K E  +L AEK +I+  LN+  +    +  
Sbjct: 419 MTRYDLTESQANAILDIRLRQLARLEEIELKREQSDLEAEKAQIEGYLNNPDKLTGLMIE 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+       +   + G +R +         A  +  +   EP+TV++S  GWIRS K H 
Sbjct: 479 ELT------ADMKEHGDKRQSPIVERTEATALKETDLAPSEPVTVIVSKSGWIRSAKGHD 532

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD + ++++ GD+        + +++ L+   G++Y L A  L S RG GE +  L+   
Sbjct: 533 VDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDAHTLPSARGQGEPLTSLLKPT 592

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                V   +     KL++ SS+G  FI   +++  N + GK  +    ++   L+    
Sbjct: 593 GGASFVNVLMGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNVINF--DDAFSLITHQI 650

Query: 658 GDH---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
           G+    V VV     LL++ + ++P M +GKG +L   KDG  +  +  F   + L+ +D
Sbjct: 651 GEQDTLVGVVSSAGHLLVYPLTELPMMKKGKGNKLIDLKDGDSVVAITTFSEGDSLS-LD 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R+      D+  ++G RG  G L+PKGF +  K 
Sbjct: 710 SGKRTLTLKPMDIANFMGARGKRGGLLPKGFQKVSKV 746


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/852 (29%), Positives = 407/852 (47%), Gaps = 115/852 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +    +  +   ++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+HAM 
Sbjct: 1   MTDQKTPSGPITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMH 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G  +   + KS+RIVG+V+GK HPHGDQS+YD++VR+AQ +     LI GQGNFG+ID
Sbjct: 61  EGGYHWNRKYVKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+R+ ++A  +++ +D+D VDF++TY+    EP V P++FPNLL NG  G
Sbjct: 121 GDPPAAMRYTESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    +A++DNP I + +L++ I GPDFPT GII+  +  I ++
Sbjct: 181 IAVGMATNIPPHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIIL-GQAGIRQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG   +R +  VE +      I++TE+PYQV KS +IEK+AEL+  KRI  + D+R
Sbjct: 240 FETGRGSVIMRGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  + D+++  ++  + +++ F +NM  L+ G  P++M L  +LK
Sbjct: 300 DESDRQGYRVVIELKRDANADVIINQLYRYTPLQSSFGVNMVALN-GGKPELMNLIDMLK 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            +++ R +V+ RR+ + ++    R  +L GL IA  NIDE+IA+IR    P         
Sbjct: 359 AFVSFREDVITRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMT 418

Query: 414 --------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                               +      ++L+E Q  AIL LRL  L  L   +I  EL  
Sbjct: 419 RRWPAMDVEVLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGK 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  E +    +L S  +    +  E+  V++ F        RRT   E          + 
Sbjct: 479 IGEEIKDFLEILGSRIRVQQIVKDELIAVRDEFGVP-----RRTVIAE---GGPDMDDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      S +  K+ D +     A+T   +L 
Sbjct: 531 LIAREDMVVTVSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLF 590

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L  G     G+A+  ++ L   + I +               ++  
Sbjct: 591 FSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFS 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           + +G     + S+ +   R GK  +K+    +++  V      D V +     + + FS+
Sbjct: 651 TKRGTVRRNKLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSV 710

Query: 676 DQIPEM-SRGK-GVRLQSY--------------------------------------KDG 695
           D +     R   GVR  +                                       ++G
Sbjct: 711 DDVRVFAGRNSVGVRGINLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEG 770

Query: 696 GISDVICF---KICEGLT--------------WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            + +V       + +G                 +  + + Y +  +     +  RGG G 
Sbjct: 771 DVEEVALVGEDAVEDGELSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGI 830

Query: 739 LVPKGFPRSGKF 750
                  ++G+ 
Sbjct: 831 RAT-DTSKTGEI 841



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 25/290 (8%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSVDLS 541
              T  G+       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 608 GTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRNKLSDFVQV 667

Query: 542 ALHFK-------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             + K       +GD +      +  D +LL +  G+       ++    G        I
Sbjct: 668 NRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGRNSVGVRGI 727

Query: 595 DLNHNQDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +L     I++  +         +    L    ++  A I EE ++      G+  ++   
Sbjct: 728 NLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGE 787

Query: 647 -EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVIC- 702
             ++    +K     +  V E       S  +     RG KG+R   + K G I  +I  
Sbjct: 788 LSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAA 847

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           F +  G   +  +              +  R   G  +     +  + +S
Sbjct: 848 FPVEPGDQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFN-TAKDERVVS 896



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVT-GDHVAVV 664
              +L VS KG        E   + R GK               +     V  GD + +V
Sbjct: 800 EQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFPVEPGDQIMMV 859

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
            +  +++   +  I   SR  KGV +  + KD  +  V
Sbjct: 860 SDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSV 897


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 237/758 (31%), Positives = 399/758 (52%), Gaps = 35/758 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V L+  +E  Y+ YA+S I  RA+PD+RDG KPV RRI+H+M E+        +K ARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+Y++LV+LAQ +  RYPL+ G GNFG++DGD AAA RYTEAR+++
Sbjct: 72  VGDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++  ++  +++D VDF   ++  + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E
Sbjct: 132 ISMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 199 ICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
              AA+ +IDN      E  I++L++ + GPDFPTG  I+  R+ I ++YR GRG  +VR
Sbjct: 192 TIYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   +E +  G   I+VTE+PY V KS LI+ + +L+  KRI  + DIRDES+ +   V+
Sbjct: 251 AITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ ++++  +F  + ++  F   M  L  G VP+++ L  +L  +L H+ +V+ 
Sbjct: 311 IELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNLKDMLTYYLKHQEDVVT 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR+ + +   + R  IL+G LIA  NIDE+I IIRN     + K  ++ RF L+E Q  A
Sbjct: 370 RRTRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGA 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RLR+L  LE  +I++E + L A+  +   +L    +    I  E+  + + +    
Sbjct: 430 IVDMRLRALTGLEREKIENEYNELKAKIAEYKEILADENKLLGVIKTELTAIADKYGDE- 488

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT+             + +I++E I + ++  G+I+                +  
Sbjct: 489 ----RRTSIT---AYSDDITDEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKG 541

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           ++  + D +      +T + I+  +  G+ Y +    +        G AI  L+ L  N+
Sbjct: 542 MNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPNE 601

Query: 601 DIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            +             L++ +  G     +        + G   + ++  +++  V   +G
Sbjct: 602 KVTAIIPITGFDKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNDGDELIEVKATSG 661

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSA 715
           +  + +V      + F+ D + +  R   GVR          +VI  ++  +G   +   
Sbjct: 662 ENDIFLVTTKGMCIRFNEDCVRDTGRTSMGVRGIRC--DKNDEVIAMQLDVQGDEILFVT 719

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +           RGG G    +   ++G  +S+
Sbjct: 720 ANGMGKRTELSEFAPQMRGGKGVKCYRITEKTGDIVSA 757



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 72/212 (33%), Gaps = 13/212 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   ++ +  G ++  K  +        L+A+   +GD L         + I L++T G
Sbjct: 613 DKKYLMMATKNGIVKKTKIEAFENIRKTGLAAITLNDGDELIEVKATSGENDIFLVTTKG 672

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                    +         ++  I  + N +++   +     ++L V++ G     E SE
Sbjct: 673 MCIRFNEDCVRDTGRTSMGVRG-IRCDKNDEVIAMQLDVQGDEILFVTANGMGKRTELSE 731

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R GK      +   + + +          + ++     ++      I  + R   
Sbjct: 732 FAPQMRGGKGVKCYRITEKTGDIVSAKAVTNDHDIMMMTNEGIMIRMHCSDITVIGRITS 791

Query: 686 GVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
           GV+L +   G  ++ V      E    +D  G
Sbjct: 792 GVKLMNVGSGAFVASVAKLARTEEEENVDEDG 823


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/758 (36%), Positives = 439/758 (57%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    + E +V+ +SL+   E+ YL Y++  I +RA+P + DG KPV RRI++AM E+ 
Sbjct: 1   MTMDIHVEEGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELS 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G   D  
Sbjct: 61  LTASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+ +A   L+ +P+ ++  L+ Y+  PDFPT   I+     + + Y 
Sbjct: 181 VGMATDIPPHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++R R+ +EE       +VVT +PYQV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSVKLRGRYTLEEGN-----VVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D + LM  +F  +D+E    +N+NV+ +   P+VM L+ IL 
Sbjct: 296 STHETPTRLVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILD 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  ++ R+ IL+GLL AYLNIDE+I IIR ED PK  ++  F 
Sbjct: 356 EWLRFRRATVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTALIEAFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL LRLR L KLEE++I+ E D LLAE+E++  LL +     + I  E+R+ 
Sbjct: 416 LSERQAEAILELRLRHLAKLEEFKIRGEQDELLAERERLKELLGNDAALTDLIERELRQD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +  +     RR    E   A   +  + +    PITVV+S +GWIRS K H +D + 
Sbjct: 476 ADGYGDA-----RRAPLVERGEAKALSEVELIGAD-PITVVLSEKGWIRSAKGHEIDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD   +A    +   ++LL   G++YTL A NL S R  GE I   I+      +
Sbjct: 530 LSYKAGDRFHLAARGKSNQPLVLLDDAGRSYTLTAHNLPSARSQGEPITGRINPGAGARM 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660
           V   +     + L+ S  G  FI    ++I  ++ GK  L V     +   V V  G+  
Sbjct: 590 VGVMLDVPEARYLLASDGGYGFIARLDDLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDT 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWI 712
            +AVV    +LL+F ++Q+P M++GKG ++          ++  + D+           +
Sbjct: 650 RIAVVSNEGRLLVFPLEQLPVMAKGKGNKMIDIPGARAANREEFVRDL-AMLPAGASLVV 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +  R    S  DL  ++G+RG  GS + +GF +  + 
Sbjct: 709 HAGKRKQTLSSRDLDYYVGERGRRGSKLSRGFQKVDRL 746


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 231/773 (29%), Positives = 389/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 277 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 515 GD-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 567 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 APDETIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   +++     ++  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRND--DSLLAM 744

Query: 704 KICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  G +           + +        L  R G+G    +     G  + +
Sbjct: 745 DVVPGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +   ++  ++       DS   L VV+++G A  
Sbjct: 708 GMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 767 TAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SR-GKGVRLQSYKDGG 696
            R  +GV       G 
Sbjct: 827 GRNTQGVTFAKPDKGD 842


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/796 (32%), Positives = 427/796 (53%), Gaps = 61/796 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++N+ N ++    + + + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MENLFNKDS----DTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+ID
Sbjct: 57  DLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SG
Sbjct: 117 GDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H++ E+ +  L L+DN E S+E+++++I GPDFPT GI +  ++ I+++
Sbjct: 177 IAVGMATNIPPHSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGI-IYGKKGIIDA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  ++RA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++R
Sbjct: 236 YRTGRGRIKIRAKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVR 294

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L 
Sbjct: 295 DESDREGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLN 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR+ V+ RR+ + +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V+
Sbjct: 354 LFLTHRKTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVA 413

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F L+E Q +AIL+++L  L  LE  +I++EL  LL E  ++D +L S     + I  E+
Sbjct: 414 KFGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           +E+K  F              ++         + +I  E + V I++RG+I+        
Sbjct: 474 KEIKAKFDVP--------RITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYE 525

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K       A+   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A
Sbjct: 526 KQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKA 585

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI+L   + I+       +  +  L   +  G       SE       G   + +  
Sbjct: 586 VVNLINLQAEEKIMAIIPTSDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDE 645

Query: 647 EEKMKLVVKVT----------------------------GDHVAVVGENRKLLIFSIDQI 678
            +++   + V                             G  +  V +    + F + ++
Sbjct: 646 NDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKV 705

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
            E+ R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG 
Sbjct: 706 REIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEVLSVSVKGIGKRTNAGEYRLQSRGGK 765

Query: 737 GSLVPKGFPRSGKFLS 752
           G +  K   ++ + +S
Sbjct: 766 GVICMKLTDKTKELIS 781



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 39/226 (17%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +  +   +       +  G ++           SV + A++  E D L  A
Sbjct: 593 QAEEKIMAIIPTSDFAESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTA 652

Query: 555 LHAH---------TTD-----------------RILL-LSTDGKAYTLPAGNLLSGRGHG 587
           +            + D                 ++L  ++  G     P   +       
Sbjct: 653 IIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFAVTKRGMCIKFPLAKVREIGRVS 712

Query: 588 EAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             +  +     N ++V    + +   ++L VS KG        E    +R GK  + +  
Sbjct: 713 RGVTAIKFKEKNDELVGAVVIENDEQEVLSVSVKGIGKRTNAGEYRLQSRGGKGVICMKL 772

Query: 647 EE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            +   ++  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 773 TDKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGV 818


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  +SL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/790 (33%), Positives = 426/790 (53%), Gaps = 62/790 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+K
Sbjct: 8   DSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD AAA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+
Sbjct: 247 AKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P+V  L  +LK +L HR+ V+ 
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKVFSLIELLKLFLNHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       K +++ +F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I +EL  LLAE E++D +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIDNELKELLAEIERLDEILKSEALLENLIKDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L  ++
Sbjct: 537 VTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVA 656

Query: 658 GDH---------------------------------VAVVGENRKLLIFSIDQIPEMSR- 683
            D                                  +  V +    + F + ++ E+ R 
Sbjct: 657 RDENEMSNQALEDEENLENEVLENNEELENVAVGKMLFAVTKKGMCIKFPLAKVREIGRV 716

Query: 684 GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +GV    +K+     V    I  +    +  + +   +  +     L  RGG G +  K
Sbjct: 717 SRGVTAIKFKEKNDELVGAVVIENDAQEILSVSAKGIGKRTDAGEYRLQSRGGKGVICMK 776

Query: 743 GFPRSGKFLS 752
              ++   +S
Sbjct: 777 LNAKTKDLIS 786



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 44/231 (19%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     ++       +  G ++           SV + A++  E D L  A
Sbjct: 593 QADEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTA 652

Query: 555 LHA------HTTD-------------------------RILL-LSTDGKAYTLPAGNLLS 582
           +         +                           ++L  ++  G     P   +  
Sbjct: 653 IIVARDENEMSNQALEDEENLENEVLENNEELENVAVGKMLFAVTKKGMCIKFPLAKVRE 712

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  +  +     N ++V A V ++  + +L VS+KG     +  E    +R GK  
Sbjct: 713 IGRVSRGVTAIKFKEKNDELVGAVVIENDAQEILSVSAKGIGKRTDAGEYRLQSRGGKGV 772

Query: 642 LKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
           + +        +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 773 ICMKLNAKTKDLISVVIVDESMDLMALTTSGKMIRVDMQSIRKAGRNTSGV 823


>gi|332994706|gb|AEF04761.1| DNA topoisomerase IV subunit A [Alteromonas sp. SN2]
          Length = 768

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/757 (34%), Positives = 429/757 (56%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHIADGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ +E++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFSEVLLDELGQGTVDWTPNFDGTLEEPCVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +LE++ GPD+PT   ++  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELAYACAMLLDNSKAELSDVLEHVNGPDYPTEAEVITPKADIRKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        IVVT +P+Q    +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVFHEENGD-----IVVTALPHQASGGKILEQIAGQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+++ P++  +D   LM+ +F  +D+E  + +N+N++ +   P+V  L  IL 
Sbjct: 296 SDHENPTRLLITPRSNRIDTAQLMQHLFATTDLEKNYRVNLNMIGLDGRPKVKDLRTILS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R+E + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  +KPK  ++SRFS
Sbjct: 356 EWLVYRKETVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYEKPKQELISRFS 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L AE++K+ +LL S ++    I  EI   
Sbjct: 416 LSDKQAEAILELKLRHLAKLEEMKIKGEQDELAAERDKLQTLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  ++ ++  E +TVV+S +GW R  K + +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGE-AKALSEKELVPAESVTVVLSEKGWARCAKGYDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+ ++  A  L S R  GE +     L   +  
Sbjct: 530 LSYKAGDGYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFALVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               +     K LV S  G  F+    ++++  + GK +L +    K+     VT    D
Sbjct: 590 EHVIMASDEAKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPKAAKVMKPKPVTNPESD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F +  +P + +GKG +L +              +   + +G +  + 
Sbjct: 650 WCLTISNEGRMLLFPLKDLPSLGKGKGNKLINIPGAKAQSREEFVTVLAVVPDGASLKVT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R+   S +DL  + G+RG  G+ +P+G  R    
Sbjct: 710 AGKRNMTLSASDLEHYYGERGRRGNKLPRGLQRVDSV 746


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 252/771 (32%), Positives = 397/771 (51%), Gaps = 59/771 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +  N       +++ + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +
Sbjct: 1   MADPSDGNKGDRGAGDIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE G  +   ++KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F  R PLI GQGNFG+
Sbjct: 61  MSENGYSWNKPYRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE R+ ++++ +L  ++ D VDF+D Y+  + EP V P++FPNLL NG 
Sbjct: 121 VDGDPPAAMRYTEVRLQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A LA ++NP +SIE+L+E+I GPDFPTGG+I+  R  I 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIM-GRAGIR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG   VR +  VE + +    ++VTEIPYQV K+ L E+IAEL+  KR+  + D
Sbjct: 240 AAYLKGRGSVVVRGKVHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES      V+    R   PD+++  ++  + +++ F  NM  L+    P+   L   
Sbjct: 300 VRDESDRSGYRVVIELKRDAMPDVVLNQLYRFTSLQSVFAANMVALN-SGRPEQHTLLDF 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           ++ +   R  V+ RR+ F +     R  +L GL  A  NIDE+I +IR+   P   +  +
Sbjct: 359 IQAFTQFRETVITRRTKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREAL 418

Query: 418 VSR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           +SR                          + L+ +Q  AIL LRL+ L  L   +I  EL
Sbjct: 419 MSRDWPADDIAPLLLLIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADEL 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  +     ++L+S  +  + +  E+  +KE F+       RRT   E+   +     
Sbjct: 479 KALADKIRDYLNILSSRARVISIVRDELTAIKEEFATP-----RRT---EILDVEGEVDD 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I+KE + V +S+RG+I+          +      S +  ++ D +     A+T   +
Sbjct: 531 EDLIQKEDMVVTVSHRGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPV 590

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-----LLV 616
           L LS+ G AY +    L   + +  G+A+  L+ L  ++ I +              +L 
Sbjct: 591 LFLSSRGMAYKMKVWRLPLSAPQARGKALINLLPLQQDETITSILPLPEERDESGVFILF 650

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675
            +  GN    E ++     + GK  +K+   + +         D + +   N + + F +
Sbjct: 651 ATRSGNVRRNELADFAEVRQNGKIAMKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPV 710

Query: 676 DQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
             +     R   GVR     +     VI   I   +    +   +Y +  N
Sbjct: 711 TDVRIFKGRESTGVRGVRLDED--DTVISLAILRHMNATPAERAAYLKQAN 759



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 596 LNHNQDIVTAFVYD-----------STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFL 642
           L+  + I +  + D           +   +L +S +G        E   + R  KG   +
Sbjct: 791 LDDGEAIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAM 850

Query: 643 KVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            V+    ++     V   D + +V    KL+   I+ I    R  +GV +  ++      
Sbjct: 851 AVNERNGRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQGVTI--FRTDQDER 908

Query: 700 VICFKI 705
           V+  ++
Sbjct: 909 VVSAEL 914



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  + R + +  +        RGG G +      R+G+ ++S
Sbjct: 820 VLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIAS 862



 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE---------GDSLKIALHAHTTDRI 563
            M   E   + +S RG+ +   S+    S    K             L  +     TD+I
Sbjct: 812 EMGAAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIASFPVEDTDQI 871

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +L++  GK    P   + S  G       +   + ++ +V+A
Sbjct: 872 MLVTNGGKLIRCPIEGI-SITGRSAQGVTIFRTDQDERVVSA 912


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 415/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/742 (35%), Positives = 439/742 (59%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR + R+  I  R+ IL+GL+IA+LNIDE I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   ++F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRSYNRS 722
           ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  R     
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRKITLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
            +D+  + G+R   GS + +G 
Sbjct: 717 PSDIDNYRGERARKGSQLVRGL 738


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 231/773 (29%), Positives = 389/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 277 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 515 GD-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 567 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 APDESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   +++     ++  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRND--DSLLAM 744

Query: 704 KICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  G +           + +        L  R G+G    +     G  + +
Sbjct: 745 DVVPGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +   ++  ++       DS   L VV+++G A  
Sbjct: 708 GMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 767 TAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SR-GKGVRLQSYKDGG 696
            R  +GV       G 
Sbjct: 827 GRNTQGVTFAKPDKGD 842


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/769 (34%), Positives = 419/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG SGI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GVR     +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSARGVRGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 INDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/851 (29%), Positives = 408/851 (47%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/724 (35%), Positives = 432/724 (59%), Gaps = 25/724 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           L+ + GPD+PT   I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDM 335
             +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  +D D +M  +F  +D+
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ IL+GLL+
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E   L 
Sbjct: 356 AFLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRCEQSELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E++++  +L S ++  N +  E++      + +   G  R +  +     KA  +  M+
Sbjct: 416 KERDQLQGILASERKMNNLLKKELQ------ADAQAYGDDRRSPLQEREEAKAMSEHDML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y +
Sbjct: 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  
Sbjct: 530 DPITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           R GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +  
Sbjct: 590 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 649

Query: 694 -------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                  + G++ +      +    I    R       +L    G+RG  G+ + +G  R
Sbjct: 650 SAEAARGEDGLAQLYVLP-SQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQR 707

Query: 747 SGKF 750
             + 
Sbjct: 708 IDRV 711


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/758 (34%), Positives = 422/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   KNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL SGQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A + NPEISI++L E I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQIL-GKSGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES      ++ 
Sbjct: 246 VAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++ +++  + +ET F +    L  G VP+++ L  ++K ++ H++ V+ R
Sbjct: 306 EVKRDANANIVLNNLYKQTQLETTFGIINLALVDG-VPKILDLKELIKYYIEHQKNVVRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +    +R  I++GL+IA  NIDEII IIR+    D+ K +   RF LT+ Q  AI
Sbjct: 365 RTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNERFGLTDLQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++++E   L  + E   S+LN  ++    I  EI E+KE F+    
Sbjct: 425 LDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLIGVIEEEILEIKEKFAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT        +     + +IEKE + + +++ G+I+                +SA 
Sbjct: 482 --DRRTKIV---PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAG 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
           + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  +I L  N+ 
Sbjct: 537 NTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQAIINIISLATNEK 596

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I             +L+  + KG     +        R G   + +  ++++  + ++  
Sbjct: 597 ITDIMELSELSDNSQLVFQTEKGKIKKTDAQLFTNIQRNGIIAISLEDDDRLVSIRQIDH 656

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSA 715
              + V  +    + F+   I  M R  +GVR     KD  +  +   +    L  + + 
Sbjct: 657 PCDIIVTTQKGMAIKFASSDIRSMGRNARGVRAIRLSKDDNVVSMNIVEDEVYLLVVTAN 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G     S N+       RGG G    K   ++G  +++
Sbjct: 717 GFGKKTSFNNFNN--QNRGGKGVRCHKITEKTGNVVAT 752



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSV------DLSALH 544
           G+       ++  +K T    + E       V  + +G I+   +          + A+ 
Sbjct: 582 GQAIINIISLATNEKITDIMELSELSDNSQLVFQTEKGKIKKTDAQLFTNIQRNGIIAIS 641

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
            ++ D L           I++ +  G A    + ++ S   +   ++  I L+ + ++V+
Sbjct: 642 LEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSMGRNARGVRA-IRLSKDDNVVS 700

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDH 660
             + +    LLVV++ G       +      R GK        EK   VV        D 
Sbjct: 701 MNIVEDEVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTGNVVATLPANLDDD 760

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           + +V     ++  S   I    R   GV+L++ ++
Sbjct: 761 IMMVSLKGDMIRISARDISTTGRNTLGVKLKNLEN 795


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/770 (35%), Positives = 426/770 (55%), Gaps = 35/770 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DNI N+N    +++K +++  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+
Sbjct: 1   MDNIFNTN----QDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQPF  R P + GQGNFG+ID
Sbjct: 57  DLAISSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SG
Sbjct: 117 GDNAAAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP H + E+ +  L LIDNPE ++E+++E+I GPDFPT GII   ++ I+E+
Sbjct: 177 IAVGMATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIF-GKKGIIEA 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG  R+RA+  +E+ G     IVV E+PYQV K RLIE+I  L+  K I  + +IR
Sbjct: 236 YRTGRGRVRIRAKTHIEKKGN-KDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIR 294

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   ++    R    D+++ +++  ++ME  F + +  +     P++  L  +L+
Sbjct: 295 DESDRDGIRLVIELKREAMSDIVLNNLYKSTNMEVTFGVILLAIHNKE-PKIFTLIELLQ 353

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR+ V+ RR+ F ++    +  IL+GL IA  NIDEIIA+I+        K  ++ 
Sbjct: 354 LFLRHRKTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIE 413

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+L+E Q  AIL++RL+ L  LE  +I++EL  LL E +++  +L S     N I  E+
Sbjct: 414 RFNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEALLNNLIKEEL 473

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            E+K+ F        +     E+         + +I  EP+ V I++RG+I+        
Sbjct: 474 LELKDKF--------KSKRITEIVDDYDDIDVEDLIANEPMVVTITHRGYIKRVPLKQYE 525

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K       A+   + D ++    + T D ++ ++  G+ Y L    +   S    G+A
Sbjct: 526 KQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKA 585

Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  LI L  ++ I+       +D T  L   +  G       SE       G   + +  
Sbjct: 586 VVNLIQLQADEKIMAIIPTTDFDETKSLAFFTKNGVIKRTNLSEFKNIRSVGVRAITLDD 645

Query: 647 EEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           ++ +     VT +  ++ +V +    + F +    E+ R  +GV    +K+     V   
Sbjct: 646 DDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREIGRTARGVTGIRFKEENDCVVGAA 705

Query: 704 KI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I  +    +    +   +        L  RGG G +  K  P++   + 
Sbjct: 706 VIYNDQEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTPKTADLVG 755



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSL 551
              +      A +     ++       +  G I+           SV + A+   + D L
Sbjct: 590 IQLQADEKIMAIIPTTDFDETKSLAFFTKNGVIKRTNLSEFKNIRSVGVRAITLDDDDGL 649

Query: 552 KIALHAHTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYD 609
             A       + L + +  G       G+          +  +     N  +V  A +Y+
Sbjct: 650 VTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREIGRTARGVTGIRFKEENDCVVGAAVIYN 709

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE---EKMKLVVKVTGD-HVAVVG 665
              +LL V+ KG        E     R GK  + +        +  VV V  D  +  + 
Sbjct: 710 DQEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTPKTADLVGVVIVDEDKDLMALT 769

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
            + K++   ++ I +  R   GV++ S +   +   + 
Sbjct: 770 SSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLA 807


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/851 (29%), Positives = 409/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/810 (33%), Positives = 429/810 (52%), Gaps = 74/810 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++   + +++ +V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM  +G
Sbjct: 1   MKDNLLELTQDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   +A+ KSARIVGEVIGK HPHGD +VYD+LVR+AQ F  RYP++ GQGNFG+IDGDS
Sbjct: 61  VGSRSAYMKSARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT + E +L+ +D+D VDF   Y++ + EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+ +  L L++N E ++E+++E+I GPDFPTGGII   ++ I+E+YR 
Sbjct: 181 GMATNIPPHSLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIF-GKKGIIEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKLRAKTHIEK-KPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   V+    R    D+++ ++F  + ME+ F + M  ++    P+V  L  +LK +L
Sbjct: 299 DKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKE-PKVFNLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR+ V+ RR+ F ++    R  IL+GL IA  NIDE+I +IRN       +  ++S+F+
Sbjct: 358 NHRKTVIIRRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSKFN 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  L+AE  ++D +L S     N I  E+ E+
Sbjct: 418 LSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLENLIKEELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F              E+         + +I  E + V I++RG+I+          K
Sbjct: 478 KNKFKVP--------RVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  
Sbjct: 530 RGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I        +D +  L   +  G       SE       G   + +   ++
Sbjct: 590 LIQLQPDEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSVGVRAISLDENDE 649

Query: 650 MKLVVKV-------------------------------------------TGDH--VAVV 664
           +   +                                             +GD   + VV
Sbjct: 650 LVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNEIDEDSANAEEDTNSGDETMLFVV 709

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRS 722
            +    L F I ++ +M R  +GV    +K+ G   V    I       +  + +   + 
Sbjct: 710 TKKGMCLKFKISKVRQMGRTARGVTGIKFKEPGDEVVGAAVIESNDQEILSISQKGIGKR 769

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  L  RGG G +  K   R+G  + 
Sbjct: 770 TTADEYRLTNRGGKGVICMKLTSRTGDLVG 799



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 25/236 (10%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSL 551
              +     KA +     ++       +  G ++           SV + A+   E D L
Sbjct: 591 IQLQPDEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSVGVRAISLDENDEL 650

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             AL A T D + +          P   L   S     E IQ  ID +           D
Sbjct: 651 VTALIAQTYDDMPVTD--------PENELSVESEVLEIEEIQNEIDEDSANAEEDTNSGD 702

Query: 610 STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSS-EEKMKL--VVKVTGDHVAVV 664
            T  L VV+ KG     + S++  +  T +G T +K     +++    V++     +  +
Sbjct: 703 ET-MLFVVTKKGMCLKFKISKVRQMGRTARGVTGIKFKEPGDEVVGAAVIESNDQEILSI 761

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
            +       + D+    +RG KGV       + G +  V+     + L  + S+G+
Sbjct: 762 SQKGIGKRTTADEYRLTNRGGKGVICMKLTSRTGDLVGVVMVDEEQDLMALTSSGK 817



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 7/146 (4%)

Query: 547 EGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV- 603
           + DS       ++ D  +L   +  G         +         +  +       ++V 
Sbjct: 688 DEDSANAEEDTNSGDETMLFVVTKKGMCLKFKISKVRQMGRTARGVTGIKFKEPGDEVVG 747

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGD 659
            A +  +  ++L +S KG        E     R GK  + +       + + +V+     
Sbjct: 748 AAVIESNDQEILSISQKGIGKRTTADEYRLTNRGGKGVICMKLTSRTGDLVGVVMVDEEQ 807

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK 685
            +  +  + K++   +  I +  R  
Sbjct: 808 DLMALTSSGKMIRVDMQSIRKAGRNT 833


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/756 (35%), Positives = 414/756 (54%), Gaps = 31/756 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL    A+KKS
Sbjct: 12  KVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNTAYKKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE +GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD AAA RYTEAR
Sbjct: 72  ARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++ EL+L  +D+D VD+   ++E   EP+  P+  PNLL NG+SGIAVGMAT+IP HN
Sbjct: 132 LYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALID--NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           + E+ +A   LID    ++ I ++L  + GPDFPTGG+I+  R+ I+++YR GRG   +R
Sbjct: 192 LVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLIL-GRDGIIDAYRTGRGKITMR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE  RG   IV+TEIPY V K+ LIE IA+ +  K I  + D+RDES  +   ++
Sbjct: 251 GRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREGLRIV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              NR  DP+L++  ++  + +++ F +    L  G  P+ + ++ +L  +L HRR V+ 
Sbjct: 311 IEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGY-PKELSIEEMLNIFLNHRRSVVR 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ FR++  + R  I++GL+ A   IDE+IA+IR     ++ K  ++S+   +E Q  A
Sbjct: 370 RRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISKLDFSEAQAQA 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RL+ L  LE  ++++EL  LL++ E+  ++L + K   + I  E+ EVK  F    
Sbjct: 430 ILEMRLQRLTGLEREKLEAELAQLLSDIERYQTILGNPKVLDSVIKEELLEVKRRF---- 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------A 542
             G  R T  E+  A +    + +I +  I VV+S  G++R        L          
Sbjct: 486 --GNERKT--EIIDAVEDVSIEDLIPESDIVVVLSRDGYLRRKDLQEYTLQGRGGKGRKG 541

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHGEAIQLLIDLNHNQD 601
              +E D + +     T   I L ++ G+   L    +  S  G G+ I   + L   + 
Sbjct: 542 TALQEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIPESKTGRGKLINRFVALEEGER 601

Query: 602 IVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           +VT      D       ++ +G A  ++ SE+   TR G+  + +   +++  +V  +G 
Sbjct: 602 VVTMHGRAVDGAKYAFFITLRGTAKRLDLSELENLTRAGRRVMGLDEGDEISQIVLTSGD 661

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW-IDSAG 716
           DH+ +V    + L     +   M R  +GVR    +      VI   +     W +  + 
Sbjct: 662 DHLLIVTAQGQALRTHESEFRPMGRTARGVRGIRLRKNDY--VIGCDVVANGRWPLLLSE 719

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + +        L  RGG G +V     R+G  + 
Sbjct: 720 NGFGKRTKYDEFSLRHRGGSGVIVMNLSDRTGLIVG 755



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 59/176 (33%), Gaps = 6/176 (3%)

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                +   EGD +   +     D +L+++  G+A                 ++  I L 
Sbjct: 639 AGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPMGRTARGVRG-IRLR 697

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV--- 654
            N  ++   V  +    L++S  G     +  E     R G   + ++  ++  L+V   
Sbjct: 698 KNDYVIGCDVVANGRWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLSDRTGLIVGCW 757

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
               GD +  +    +++  ++ + P + R   G  +    +G           E 
Sbjct: 758 SVAEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTED 813


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 231/773 (29%), Positives = 389/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 277 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMGLLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 515 GD-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRSQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 567 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGARDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 APDESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICF 703
           +++         D + +V +    L F  D   +  M R   GV+   +++     ++  
Sbjct: 687 DELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAGVQGMKFRND--DSLLAM 744

Query: 704 KICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  G +           + +        L  R G+G    +     G  + +
Sbjct: 745 DVVPGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGA 797



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +   ++  ++       DS   L VV+++G A  
Sbjct: 708 GMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVPGDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 767 TAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SR-GKGVRLQSYKDGG 696
            R  +GV       G 
Sbjct: 827 GRNTQGVTFAKPDKGD 842


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/772 (33%), Positives = 418/772 (54%), Gaps = 36/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  + IS +     +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++A
Sbjct: 1   MQDNLISET-----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 55

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL    A+KKSARIVG+VIGK HPHGD +VY +LVR+AQ F  R  L+ GQGNFG+
Sbjct: 56  MHELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGS 115

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG 
Sbjct: 116 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 175

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+
Sbjct: 176 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGII 234

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y+ GRG  +VRA+  VE++ +    IV+ E+P+Q  K++L+E+I++L   K+I  + +
Sbjct: 235 EAYKTGRGRVKVRAKVHVEKM-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISE 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +
Sbjct: 294 VRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLEL 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
           L+ +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  +
Sbjct: 353 LRLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNAL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  
Sbjct: 413 MERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELINDLNGILKSEDRLNEVVKT 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ EVKE FS      +RRT   E          + +I  EP+ V +S +G+++ +   +
Sbjct: 473 ELLEVKEQFSS-----QRRTEIQEAYEN---IDVEDLIANEPMVVSMSYKGYVKRVDLKA 524

Query: 538 VDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHG 587
            +      K        E D ++    A+T D +L ++  G+ Y L    +        G
Sbjct: 525 YERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMG 584

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643
           +AI  LI L  ++ I+       +     L   +  G       SE  +N    G   + 
Sbjct: 585 KAIVNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIV 644

Query: 644 VSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +   +++     V  D  H+ +       + F ++ + E+ R  +GVR     +      
Sbjct: 645 LDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIGRNARGVRGIKLNENDFVVG 704

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 705 AVVINDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 15/211 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIA 554
                 ATL       E      +  G ++               + A+   EGD L  A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSA 654

Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                  + LL+++  G     P  ++     +   ++ +    ++  +    + D + K
Sbjct: 655 KIVDKDAKHLLIASYLGIFIKFPLEDVREIGRNARGVRGIKLNENDFVVGAVVINDDSNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G             +R GK  + +   +K   +  V  V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVSVTSVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEM-SRGK-GVRLQSYKDGGI 697
           K++  SI  I E   R   GV+L    D  +
Sbjct: 775 KMIRVSIKDIKETIGRNTSGVKLIDTADKVV 805


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 268/751 (35%), Positives = 436/751 (58%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E  +   L    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A 
Sbjct: 1   MSSEVTERTPLSKFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  R+PL+ GQGN+G   D  S AA R
Sbjct: 61  YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+++  +E++L  + +  VD+   ++    EP + P++ P++L NG +GIAVGMAT 
Sbjct: 121 YTEAKLSHFSEVLLSELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN +E+  A   LID P   +++++E++ GPD+PT   I+  +  + + Y  GRG  
Sbjct: 181 IPPHNAREVANACALLIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA++ +EE       IV+T +P+Q   ++++E+IA  + AK++PL+ D+RDES  +  
Sbjct: 241 KMRAKYHLEE-----NEIVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D + LM+ +F  +D+E ++ +N+N+L +   PQV PL GIL EWL  R
Sbjct: 296 TRLVVVPRSNRVDTEQLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ + RR  +R+  ++ R+ IL+GLLIA+LNIDE+I IIR ED+PK  ++ RF+LT+ Q 
Sbjct: 356 KQTVTRRLQYRLDKVEARLHILQGLLIAFLNIDEVIEIIRYEDEPKKELIKRFALTDTQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L +LEE ++K E + L  E+EK+  LLNS ++    I  EI    E +  
Sbjct: 416 EAILELKLRHLARLEEMKLKGEQEELEKEREKLSQLLNSDRRLKTLIKKEILADAEKYGD 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RR+   E +   KA  +  +   E +TVV+S +GW+R  K H VD   L +K G
Sbjct: 476 E-----RRSPLVERAE-AKALSETELTPAEAVTVVLSAKGWVRCAKGHDVDGEKLSYKSG 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DS + A    +   ++ L T G++Y+  A +L S R  GE +    ++   + +  A + 
Sbjct: 530 DSFQAAAQGKSNLPVVFLDTSGRSYSCEAHSLPSARSQGEPLTGRFNMVAGEMVQHALMA 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVG 665
                 L+ S  G  F+ +  ++++  + GK  L + +  K+   V+V       V VV 
Sbjct: 590 RDEQYYLLSSDAGYGFVCQFKDLVSRNKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKD------GGISDVICFKICEGLTWIDSAGRSY 719
              ++L+F I  +P++++GKG ++ S               +     E    + +  R  
Sbjct: 650 NEGRMLVFPIADLPQLAKGKGNKMISIPTLRAQSREEYVVAVSVASPESTVTLHAGRRKL 709

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                DL  + G+RG  G+ +P+G  R  + 
Sbjct: 710 TLKPADLAHYHGERGRRGNKLPRGLQRVDRI 740


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/741 (36%), Positives = 436/741 (58%), Gaps = 22/741 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++E++L  + +  V+++  ++    EP   P++ P++L NGT+GIAVGMAT IP 
Sbjct: 128 SRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+DNP   +++L+  + GPDFPT   I+  +E I + Y  GRG  ++R
Sbjct: 188 HNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E        I++T +P+Q   S+++ +IAE +  K++P++EDIRDE+  +  +R+
Sbjct: 248 AVWKKEN-----GEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIRL 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR+ 
Sbjct: 303 VIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTFRRQT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ Q +AI
Sbjct: 363 VTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE ++++E +NL  E+  ++ +LNS  +  N I  EI++  + F+    
Sbjct: 423 LNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R +        KA  +  M   EPIT+++S  GW+R  K H ++  AL +K GD+ 
Sbjct: 481 ----RLSPLVERAEAKAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYKTGDNY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                  +   ++ + + G++YTL   +L S R  GE +   + L     I    + +  
Sbjct: 537 LTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLLIENEN 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRK 669
             LL+ S  G  FI +  ++++  + GK  + +     +   + +      +V      +
Sbjct: 597 QSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNR 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI-DSAGRSYNRSE 723
           +L+F +  +PE+S+GKG ++      + K+     V  F I E  + +  +  R      
Sbjct: 657 MLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRKVTLKP 716

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
            D+  +  +RG  GS +P+G 
Sbjct: 717 EDIQKFRAERGRKGSPLPRGL 737


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/747 (36%), Positives = 444/747 (59%), Gaps = 22/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ +++ LL  + GPDFPT   I+  +E I + Y+ GR
Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  VRIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+L++
Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++  + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E +   KA  +  M+  EP+TV++S  GW+R  K H +D   L++
Sbjct: 477 YASP-----RRSPLVERAE-AKAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L   +L S R  GE +   + L     I   
Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIDQL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV- 664
            + +    LL+ S  G  FI + ++++A  + GK  + +    K+   + +      +V 
Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650

Query: 665 -GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI-DSAGR 717
                ++LIF +  +PE+S+GKG ++ +             V    I E  + +  S  R
Sbjct: 651 LTSAGRMLIFPVQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/843 (29%), Positives = 401/843 (47%), Gaps = 119/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I +  L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F ++    R  +L GL IA  NIDE+I +IR    P+                      
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWI------- 712
           R  S    G   +I   I                             E +  +       
Sbjct: 726 RGISL--AGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEVTEE 783

Query: 713 -------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKF 750
                                + + + +  +     +  RGG G        ++   G+ 
Sbjct: 784 GQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGEL 842

Query: 751 LSS 753
           +++
Sbjct: 843 VAA 845



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVAVV 664
              +L VS KG        +   + R GK      +       E +       GD + +V
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
            +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 858 SDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 242/785 (30%), Positives = 401/785 (51%), Gaps = 45/785 (5%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  +  +++  + + E V+ V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+++
Sbjct: 1   MSDERTTDARHISDTERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G    ++F KS+R+VGEV+G  HPHGD ++YD+L RL QP+  RYPL++GQGNFG
Sbjct: 61  AMYDGGYRPASSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
                  AA RYTE +M  +A  +++ +DE+ VDF+D Y+  + EP + P++FPNLLANG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVES 235
           + GIAVGMAT IP HN++E+       +D+   S     E LL+ I GPDFPTG  I+  
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATIL-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            + I ++YR GRG    RA   VEE+ +G  C+VVTE+PYQV    L +KIA+L+   +I
Sbjct: 240 HKGIEDAYRTGRGSITQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQI 298

Query: 296 PLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + DIRDE S    + ++    R     +++ +++  + ++  F  NM  L  G VP+ 
Sbjct: 299 QGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVDG-VPRT 357

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411
           + +DG ++ W+ H+ +V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     D
Sbjct: 358 LSIDGFIRHWITHQIDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVD 417

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++    +   Q DAIL L+LR L  LE  +I  E   L A  + +  +L+  ++Q
Sbjct: 418 EARAGLIDLLDVDAVQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDILDKPERQ 477

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-- 529
              I+ E+ E+ + F        RRTT       D     + +I +E + V I+  G+  
Sbjct: 478 RTIISEELSEIVDKFGDE-----RRTTIL---PFDGEMSMEDLIPEEDVVVTITRDGFAK 529

Query: 530 ------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                  RS K     +     + GD ++      T   +L  +  G+ Y   A  +  G
Sbjct: 530 RTRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG 589

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G+ +  L+    ++ I        Y+    L++ +  G       +   +    G
Sbjct: 590 GRDAKGQHVANLLAFQPDERIAQVLAIRTYEDADHLVLATKSGLVKKSPLALYNSPRSGG 649

Query: 639 KTFLKVSSE-----EKMKLVVKVTGD-HVAVVGENRKLLIFSI--DQIPEMSRGK-GVRL 689
              + +  +     +++     +  D  + +V  + + + F+   +Q+  M R   GVR 
Sbjct: 650 IIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRFAATDEQLRPMGRSTSGVRG 709

Query: 690 QSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++  G  +++  ++  EG   +      Y +           RG +G  V K     G
Sbjct: 710 MKFR--GDDELLSMEVPVEGTDLLIVTESGYAKRTPVAEYPTKSRGTMGVRVGKLSDERG 767

Query: 749 KFLSS 753
             + +
Sbjct: 768 GLVGA 772



 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 21/229 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEG-----D 549
           +        L     E     V+ +  G ++           S  + A++ +E      D
Sbjct: 605 QPDERIAQVLAIRTYEDADHLVLATKSGLVKKSPLALYNSPRSGGIIAINLREDEAGNPD 664

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A        ++L+S DG+A    A +    R  G +   +  +    + ++++  V
Sbjct: 665 ELVSAQTIMADQDLILVSRDGQAVRFAATD-EQLRPMGRSTSGVRGMKFRGDDELLSMEV 723

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE-EKMKLVVKVTGD-HVAV 663
                 LL+V+  G A     +E    +R   G    K+S E   +   + V  D  V V
Sbjct: 724 PVEGTDLLIVTESGYAKRTPVAEYPTKSRGTMGVRVGKLSDERGGLVGALVVKPDEDVMV 783

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           + E+ KL+  +   +   SR   GV     +      +I        T 
Sbjct: 784 ITESGKLVQVNASDVRPTSRNTMGVIF--ARPDADDRIIAITRNSDSTV 830


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 268/747 (35%), Positives = 441/747 (59%), Gaps = 22/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++++  E ++ + LR   E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G +D   S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+R+++++E++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +AA+ L+DNP+ ++  LL  + GPDFPT   I+  +E I + Y+ GR
Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIRKIYQQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  
Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  VRIV+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED+PK  +++RF+L++
Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E+  ++ +L S ++    +  EI++  + 
Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RR+   E +   KA  +  M+  EP+TV++S  GW+R  K H +D   L +
Sbjct: 477 YASP-----RRSPLVERAE-AKAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD      +  +    + + + G++Y L   +L S R  GE +   + L     +   
Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATVDQL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV- 664
            + +    LL+ S  G  FI + ++++A  + GK  + +    K+   + +      +V 
Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650

Query: 665 -GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI-DSAGR 717
                ++LIF    +PE+S+GKG ++ +             V    I E  + +  S  R
Sbjct: 651 LTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                  DL  +  +RG  G+ +P+G 
Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/855 (29%), Positives = 403/855 (47%), Gaps = 115/855 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +   S     +  +++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+  MS
Sbjct: 1   MTEQSTPGGKMPSDIEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMS 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+ID
Sbjct: 61  ELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ + A  +L  +D+D VDFRD Y+   SEPVV P+KFPNLL NG  G
Sbjct: 121 GDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+    +ALI+NP I + +L++ I GPDFPTG +I+  R  I  +
Sbjct: 181 IAVGMATNIPPHNLVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALIL-GRSGIRSA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R    +E +      I++TEIPYQV KS +IEK+AEL+  KRI  + D+R
Sbjct: 240 YETGRGSVIMRGVARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  + D+++  ++  + +++ F  NM  L+ G  P+ + L  +L+
Sbjct: 300 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQSSFGCNMVALN-GGKPEQLTLLDMLR 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            +++ R EV+ RR+ + ++    R  +L GL IA  NIDE+I +IR    P+        
Sbjct: 359 AFVSFREEVISRRTKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLME 418

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      ++L+E Q  AIL LRL  L  L   +I  EL+ 
Sbjct: 419 RRWPAADVESLIRLIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNK 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + AE      +L+S  +    +  E+  V++ F        RR+   E          + 
Sbjct: 479 IGAEISDYLDILSSRTRIQTIVVDELVAVRDEFGTP-----RRSQIME---GGPDMDDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +S+ G+I+          +      S +  ++ D +     A+T   +L 
Sbjct: 531 LIAREDMVVTVSHLGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLF 590

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L  G     G+A+  ++ L   + I T               ++  
Sbjct: 591 FSSRGIVYKEKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFS 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI 675
           +++G     + S+ +   R GK  +K+    +++  V   T  D V +     + + F +
Sbjct: 651 TTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPV 710

Query: 676 DQIPEM-SRGK-GVRLQSYK-------------------------------------DGG 696
           D++     R   GVR  S +                                     D  
Sbjct: 711 DEVRVFAGRNSIGVRGISLQPNDRIISMTILSHVDAEPWQRAAYLKRSATERRASGVDED 770

Query: 697 ISDVICFKICE---------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              ++  ++ E                   +  + R   +  +        RGG G    
Sbjct: 771 DIALVGEEVGEIGDLSEERYQELKAREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRAT 830

Query: 742 KGFPRS---GKFLSS 753
               ++   G+ +++
Sbjct: 831 -DTSKTLEIGQLVAA 844



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 75/288 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + +             +  + RG +R  K             A
Sbjct: 622 PLEPGERITTIMPLPEDEASWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 674

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+A   P   +    G        I L  N  
Sbjct: 675 MKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGRNSIGVRGISLQPNDR 734

Query: 602 IVT-----------------------------------AFVYDS---------------- 610
           I++                                   A V +                 
Sbjct: 735 IISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEVGEIGDLSEERYQELK 794

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTG-DHVA 662
                +L +S +G        +   + R GK              ++     V   D + 
Sbjct: 795 AREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIM 854

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEG 708
           +V +  +L+   +D I   SR  KGV +  + KD  +  V      EG
Sbjct: 855 LVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINEPEG 902


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 240/749 (32%), Positives = 385/749 (51%), Gaps = 35/749 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    ++  +E  +L Y++S I  RA+PD+RDG KPVHRRI++ M E G D    ++KS
Sbjct: 14  KVIERDVKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPQHPYRKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG V+G  HPHGD SVYD++VRLAQ F  RYPL+ GQGNFG++DGD  AAYRYTEAR
Sbjct: 74  ADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEAR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L  +++D +D+   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 134 MSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQGIAVGMATNIPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+     AL+DNP+I +  L+E++ GPDFPTGGII+  R  I  +Y  GRG   +R R
Sbjct: 194 LREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIM-GRSGIRAAYATGRGKITLRGR 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLF 314
             + E   G + I++TEIPY V K+RLIE IA+L+  KRI  + D+ DE S+     ++ 
Sbjct: 253 AEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLNDESSSRTGMKIVI 312

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +++  ++  + ++    + M  L  G VP++M L  +++ ++  + EV+ R
Sbjct: 313 EIKKDANPQVVLNQLYRYTQLQDTVGVIMLALDDG-VPKIMSLKTVMERYIDFQMEVIRR 371

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTENQVDA 430
           R++F ++    R  IL+GL  A   +DEIIA IR       + +  ++  F   E Q DA
Sbjct: 372 RTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVMDNFGFDELQADA 431

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L  LE  +I+ EL  L         +L++ +     +  +++ + + +    
Sbjct: 432 IVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKRIVKTDLQTLADKY---- 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
             G  R T  E    +     + +I +E     +++ G+I+                +  
Sbjct: 488 --GDERRTSIEAVSGEVDI--EDLIPEETCIFTLTHEGYIKRTTLDTYQAQNRGGRGVQG 543

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  K+ D  +      T D +L ++  G+ Y L    +   S    G  I  L+ L   +
Sbjct: 544 MTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSHIVNLLQLQEGE 603

Query: 601 DIV-----TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            +      +A   +    L +V+ +G       S+     + G   + ++  + +     
Sbjct: 604 KVTLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIGLNEGDSLVWSHL 663

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWI 712
              GD + V   +   + F+      M R G GVR+   ++G    VI   +C  G T +
Sbjct: 664 TGGGDEIIVATHDGAAIHFTESGARAMGRTGHGVRVIRLREGDY--VIGAGVCRPGATVL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                   R        + KRGG+G    
Sbjct: 722 TITEDGKGRRSRVDDYRITKRGGLGIRNY 750



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 12/197 (6%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E      +++ +G I+              L A+   EGDSL  +      D I++ + 
Sbjct: 616 DEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIGLNEGDSLVWSHLTGGGDEIIVATH 675

Query: 569 DGKAYTLPAGNLLSGRGHGE--AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           DG A           R  G       +I L     ++ A V      +L ++  G     
Sbjct: 676 DGAAIHFTES---GARAMGRTGHGVRVIRLREGDYVIGAGVCRPGATVLTITEDGKGRRS 732

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
              +     R G      +      + +    D + ++  N  L+      I   SR G 
Sbjct: 733 RVDDYRITKRGGLGIRNYAKGGVAGIKIVDETDDLILISANGILIRLHASDINVQSRYGS 792

Query: 686 GVRLQSYKDGGISDVIC 702
           GVR+    +G    ++ 
Sbjct: 793 GVRVMRLGEGDKVAMVA 809


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/743 (35%), Positives = 445/743 (59%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           VL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQTEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++ +      K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPAQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/843 (29%), Positives = 402/843 (47%), Gaps = 119/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F ++    R  +L GL IA  NIDE+I +IR    P+                      
Sbjct: 374 KFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELSAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWI------- 712
           R  +  +G    +I   I                             E +  +       
Sbjct: 726 RGINLGEG--DRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEE 783

Query: 713 -------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKF 750
                                + + + +  +     +  RGG G        ++   G+ 
Sbjct: 784 GQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGEL 842

Query: 751 LSS 753
           +++
Sbjct: 843 VAA 845



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 78/291 (26%), Gaps = 75/291 (25%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + +             +  + RG +R  K             A
Sbjct: 623 PLEPGERITTILPLPEDEASWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 675

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L     
Sbjct: 676 MKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDR 735

Query: 602 IVT-----------------------------------AFVYDS---------------- 610
           I++                                   A V +                 
Sbjct: 736 IISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELK 795

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 796 AREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIM 855

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEGLTW 711
           +V +  +L+   +  I   SR  KGV +  + KD  +  V      E    
Sbjct: 856 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEEDDT 906


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/749 (32%), Positives = 405/749 (54%), Gaps = 30/749 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E N+    +   ++E +L Y+++ I  RA+PD+RDG KPVHRRI++ M E GL    A
Sbjct: 1   MDEYNLIDQDVEHIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG++DGD  AAYRY
Sbjct: 61  YRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM +++  +L  + +D VDF+  Y++   EPVV PS+FPN+L NG+ GIAVGMAT+I
Sbjct: 121 TEARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E    ++ NP+ ++++L++ I GPDFPTGGII+  R  I  +Y  GRG   
Sbjct: 181 PPHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +EE+ +G  CI+VTEIPY V K+RL+E IA L+  KRI  + D+RDE+  D   
Sbjct: 240 LRSKTSIEEI-KGRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  +  +++  +F L+ ++    + +  L  G VP+V+ L  IL+E++  + +V
Sbjct: 299 IVIELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKG-VPKVLTLKQILQEYIDFQVDV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F ++    R  IL+GL+IA  NIDE+I I++      + K  +++RF L++ Q 
Sbjct: 358 IRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFGLSDIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + I  + L  L  +E  +I  EL+ + A+    + +L + ++  + I  E+  ++E +  
Sbjct: 418 EHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEEVEAIQEKY-- 475

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
               G  R T  E    +     + +I  E   V  +N G+I+                +
Sbjct: 476 ----GDERRTQIENVSGEVDI--EDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGV 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
           + +  +E D +       + D IL ++T G+AY +    L  G     G  I+ L++L+ 
Sbjct: 530 TGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLLELSD 589

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +  I        +D    +++V+ +G       S      ++G   + +   +++  V  
Sbjct: 590 DNLIAAMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGDEIAGVRL 649

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             G + + +   N   +  S + +  MSR   GVR    + G    V   +I EG + + 
Sbjct: 650 TEGNNELLIATHNGMAIRISENDVRVMSRTAHGVRAIKLR-GDDYVVSMARIREGASVLT 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +     R        +  RGG G L  K
Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGVLNYK 737



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 14/209 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
           A ++    + +   V+++ RG I+     +        L A+   +GD +         +
Sbjct: 595 AMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGDEIAGVRLTEGNN 654

Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            +L+ + +G A  +   ++  +S   HG      I L  +  +V+         +L VS 
Sbjct: 655 ELLIATHNGMAIRISENDVRVMSRTAHG---VRAIKLRGDDYVVSMARIREGASVLTVSE 711

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            G    VE        R G   L   + +   + V    D + ++  +  ++      I 
Sbjct: 712 TGLGRRVELESYPVRHRGGSGVLNYKNGDVCGIKVVDEDDDIIMISSDGIVIRLRACDIS 771

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICE 707
            M R  +GVRL      G + V+ F   E
Sbjct: 772 MMGRYSRGVRLMKVT--GDNKVVTFTRTE 798


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/773 (30%), Positives = 391/773 (50%), Gaps = 48/773 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+P+ S  +LLE     I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 280

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 281 MRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQ 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 340 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    D  +  +++   + + Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q   +  E+ E+   + 
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDELDEIVAKYG 518

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V ++  G+I+                
Sbjct: 519 DE-----RRTRILPFSG---EMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+   
Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGSRDSKGQHVANLLQFT 630

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------- 647
             + I        YD    L++ +  G        E  +  + G   +++ +        
Sbjct: 631 PGETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPA 690

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDV 700
           +++         D + +V +    L F  D   +  M R   GV+   +++       DV
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDELLDMDV 750

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  +  + L  + + G  + +        L  R G G    +     G  + +
Sbjct: 751 VSVETSKDLLVVTNEG--FAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 801



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   ++ D I+L+S  G +    A +      GR     +Q +     ++ + + 
Sbjct: 691 DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA-GVQGMRFREDDELLDMD 749

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               +++  LLVV+++G A      E     R G     V   E     +  ++    D 
Sbjct: 750 VVSVETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQ 809

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++   ++++    R   GV L     G   ++I     E
Sbjct: 810 VMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 855


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 277/753 (36%), Positives = 435/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELIAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRDAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   GSL+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVD 742


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/843 (29%), Positives = 402/843 (47%), Gaps = 119/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F ++    R  +L GL IA  NIDE+I +IR    P+                      
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T D   ++     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWI------- 712
           R  +   G    +I   I                             E +  +       
Sbjct: 726 RGINL--GDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVTEE 783

Query: 713 -------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKF 750
                                + + + +  +     +  RGG G        ++   G+ 
Sbjct: 784 GQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGEL 842

Query: 751 LSS 753
           +++
Sbjct: 843 VAA 845



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 75/280 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
               G R TT   +   + +             +  + RG +R  K             A
Sbjct: 623 PLAPGERITTILPLPEDETSWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 675

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L  +  
Sbjct: 676 MKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGDSDR 735

Query: 602 IVTAFV-------------------------------------------------YDS-- 610
           I++  +                                                 YD   
Sbjct: 736 IISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVTEEGQLSDERYDELR 795

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 796 AREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIM 855

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
           +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 856 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 244/838 (29%), Positives = 410/838 (48%), Gaps = 100/838 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S  +    +   AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  
Sbjct: 3   SEIDQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 62

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 63  NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAA 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE RM ++A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ GIAVG
Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MATSIP HN+++     L L+  PE  I  L++ I  PDFPTG   +     I   Y+ G
Sbjct: 183 MATSIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGA-TIYGLTGIRAGYQTG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +R++  +E +G+ S  I+V EIPYQV KS+L+EKI EL+  K +  + ++RDES 
Sbjct: 242 RGRVVIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESD 301

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L 
Sbjct: 302 KDGTRIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQ-PRLLNLKQILSEFLR 360

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR--- 420
           HRREV+ RR+ +R++       I +G  +A  NIDE+IA+I+     D  +  ++SR   
Sbjct: 361 HRREVVTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQ 420

Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            + L++ Q  AIL + LR+L  L++ +I
Sbjct: 421 SDLVSEMLNRSDLDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQDEI 480

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   L+A    +  +L   ++    I  E+  ++  F        RR+        D 
Sbjct: 481 IKEYKELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDE-----RRSEINTFGGGDI 535

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
           A   + +I    + V +++ G+I++         K       A   K+ D ++    A+T
Sbjct: 536 AD--EDLIPPREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANT 593

Query: 560 TDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D ++  +  G+ + +    L  G  +  G  I  +I L  N+ +        +     +
Sbjct: 594 HDYLMCFTNLGRCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFPEDEYV 653

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
              ++ G    V+ S     + KG   + +   + +  V K +G   + +     K + F
Sbjct: 654 FFATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRF 713

Query: 674 SI------------DQIP---------------EMSRGKGVR----------LQSYKD-G 695
           +             + +                 +   KG+R               + G
Sbjct: 714 NEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLLTNKGIRPSGRGSGGLRGMRLPENG 773

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            I  ++  ++   L  + +    Y +           +GG G +      R+G+ + +
Sbjct: 774 RIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNGELVGA 831



 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 48/246 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E +    A L      ++      +  G ++ ++  +        + A+  K+GDSL
Sbjct: 630 IQLEENEKVSAILPVRDFPEDEYVFFATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSL 689

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---------------------- 589
                   +  I+L S  GKA         +     E+                      
Sbjct: 690 VGVAKTSGSSDIMLFSNLGKAIRFNEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLL 749

Query: 590 -------------IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIAN 634
                            + L  N  IV+  V +  S  ++L  +  G             
Sbjct: 750 TNKGIRPSGRGSGGLRGMRLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRK 809

Query: 635 TRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            + G+  + + + E   ++     V+  D + ++     L+   ++Q+ E  R   GVRL
Sbjct: 810 GKGGQGIIAIDTGERNGELVGAALVSPSDDLMLITSGGVLIRTKVEQVRETGRAAQGVRL 869

Query: 690 QSYKDG 695
            +  +G
Sbjct: 870 INLDEG 875


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/849 (29%), Positives = 410/849 (48%), Gaps = 107/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +             
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE--------RL 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V  S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSYK----- 693
              K + F+                           D    +  GK GVR          
Sbjct: 710 NLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMR 769

Query: 694 ------DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DG I  +I F       GL  + +    Y +           +GG G++     
Sbjct: 770 GMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTG 829

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 830 ERNGDLVAA 838



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 52/278 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGDSL
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN------------------------LLS 582
             A     +D I+L S  GKA     Y   +GN                        L  
Sbjct: 694 IGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPG 753

Query: 583 GRGHGEAIQLLID------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
           G+                 L  +  IV+   +         ++L  ++ G       ++ 
Sbjct: 754 GKYGVRPSGRGSGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADY 813

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R   G
Sbjct: 814 SRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAG 873

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           V+L +  D G + V   ++ E  T  D        S  
Sbjct: 874 VKLINL-DEGETLVSLERVAEEETETDMPETEAGTSPE 910


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 256/762 (33%), Positives = 393/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E+   D     + +I  E + + IS   +++          K     ++
Sbjct: 483 ------RRTRIEMDAGD-VRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  +  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERKAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        ++    L + + KG    V      +  +KG   L++   +++    
Sbjct: 596 PGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAAR 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  D++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           R  VG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGDVLGA 757



 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 12/209 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKI 553
                   A L     E+     + + +G ++ +   +        + AL   +GD L  
Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653

Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H A+  ++++L +  G A   P   +         ++ +   N    +V+  V     
Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G        +     R+        +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGDVLGAISVTDCDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           + +  ++  +  M R   GVRL + ++G 
Sbjct: 774 QAIRINMQDVRVMGRATQGVRLVNLREGD 802



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 14/185 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--------WIRSLKS 535
           + F      G R     E+   D+    + +   E   ++ +  G         +R +  
Sbjct: 630 DAFGSPRKKGIR---ALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGR 686

Query: 536 HSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +  +  +  K E D +           +L++  +G        +          ++ ++
Sbjct: 687 AARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIV 746

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
               N D++ A        +L++S++G A  +   ++    R   G   + +   + +  
Sbjct: 747 INQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVA 806

Query: 653 VVKVT 657
           + K++
Sbjct: 807 MEKLS 811


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/749 (35%), Positives = 445/749 (59%), Gaps = 25/749 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E ++ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +A++ L+DNP+ +++ +L  + GPD+PT   I+  +  I   Y  GR
Sbjct: 182 ATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV++ +P+Q   S++IE++A  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RR  + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+LT+
Sbjct: 357 SFRRTTVTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+Q+++E   L  E++++  +L S ++  + I  EI+   + 
Sbjct: 417 VQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+ AL +
Sbjct: 477 FASP-----RRSPLVERAE-SKAIAESDLTPIEDVTVILSEKGWVRCAKGHDIDVQALSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AY L   +L S R  GE +   I L     +   
Sbjct: 531 RAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +S  K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    + 
Sbjct: 591 LMANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F + ++P +S+GKG ++ +         D  ++ ++  K    L ++ S 
Sbjct: 651 AMSNVGRMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            R      +D+  + G+R   GS + +G 
Sbjct: 710 KRKITLKPSDIDNYRGERARKGSQLVRGL 738


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 268/765 (35%), Positives = 417/765 (54%), Gaps = 32/765 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           NS+    + V  VS+   ++  YL YA+S I  RAIPD+RDG KPVHRR ++AM EMG  
Sbjct: 6   NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNY 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKKSARIVGEV+GK HPHGD S+YD+LV++AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 66  HDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  V+E +L+ +D++ VDF   ++E   EP+V P+K PNLL NG+ GIAVGM
Sbjct: 126 AMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P HN+ E+C A  A+ID+PEIS   L+EY+ GPDFPTGG+I+  R  I  +Y  GR
Sbjct: 186 ATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVIL-GRSGIASAYTTGR 244

Query: 248 GGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           G  R+R    +E+  G     I+++EIPYQV K+RLIE+IA+L+  K+I  + DIRDES 
Sbjct: 245 GRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESD 304

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+    +S+ P +++  ++  + +E+ F +    +   + P+V+ L  I++E+L 
Sbjct: 305 KDGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQ-PKVLTLKEIIQEFLK 363

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
           HR+ V++RR+ F ++  + R+ IL+GLL+A  NID +IA IR     ++    ++  F L
Sbjct: 364 HRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIENFGL 423

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q DAIL ++LR L  LE+ +I  E D LL E E++  +++     + +I  E  E+ 
Sbjct: 424 DEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVERLKLIISDEGHIFAEIKKETLEIS 483

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +S       RRT     S       ++ +IE + + V +++  +I+S           
Sbjct: 484 EKYSDE-----RRTKI---SHDVSDLDKEDLIENKQVLVSLTSHNYIKSMPLDTYKGQHR 535

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLL 593
               +  +  K+ D +K    A T D +L  ++ G+ Y L   ++        G+AI  L
Sbjct: 536 GGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYDIPEATRQSRGKAIVNL 595

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L   + +        +      L  +  G    + + E     + G   + +   +++
Sbjct: 596 LELGDEEKVTAVIPVSEFKEDEFFLFATLNGMVVKIPQVEFSRPRQSGIYAITLKDGDEL 655

Query: 651 KLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             V+K V    + +     + L F I+ I    R   GV+    +   + ++      E 
Sbjct: 656 VHVMKAVDSGEIILTTRMGQSLRFGIESISLRHRNALGVKGIKLR--YMDELQDVTPVEK 713

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    + Y +           R  +G    +    SG  +SS
Sbjct: 714 DHLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQ-TDVSGGIVSS 757



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 15/195 (7%)

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPA 577
           + V I     +   +     + A+  K+GD L   + A  +  I+L +  G++  + + +
Sbjct: 627 MVVKIPQ---VEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIES 683

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +L      G     L  ++  QD+           LL ++ KG     E  E   + R 
Sbjct: 684 ISLRHRNALGVKGIKLRYMDELQDVTPV----EKDHLLTITEKGYGKRTEFDEFRGHGRA 739

Query: 638 GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
                 + ++    +V        + + ++  +  ++   + +I    RG +GVR+    
Sbjct: 740 TMGVRNIQTDVSGGIVSSKAVSDDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLD 799

Query: 694 DGGISDVICFKICEG 708
           +G    V+ F I + 
Sbjct: 800 EG--DSVVGFTILDS 812



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           I     +++ +  +  +  D L+        D +L ++  G             RGHG A
Sbjct: 684 ISLRHRNALGVKGIKLRYMDELQDVTPVE-KDHLLTITEKG---YGKRTEFDEFRGHGRA 739

Query: 590 IQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS 645
              + ++  +    IV++        ++++S  G     + SEI    R  +G   +K+ 
Sbjct: 740 TMGVRNIQTDVSGGIVSSKAVSDDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLD 799

Query: 646 SEEKMKLVVKVTGDH 660
             + +     +  D 
Sbjct: 800 EGDSVVGFTILDSDE 814


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 253/734 (34%), Positives = 394/734 (53%), Gaps = 60/734 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 5   VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 65  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 243

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + I+V EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  S M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++  
Sbjct: 304 ATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLTCFIDFREEVVARRTAHD 362

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  +L GL +A  N+DE++A IR+                              
Sbjct: 363 LRKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDD 422

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++LTE Q  AIL+LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 423 PLSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRER 482

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+REV+E F+       RRT   E+         + +IE+E + V +++ G+I
Sbjct: 483 IMGIIADELREVREQFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGYI 534

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 535 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 594

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
               G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 595 SGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNV 654

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQS 691
            R GK  +K+  + ++      +  D V ++  + + + F    +     R   GVR   
Sbjct: 655 KRNGKIAMKLPEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIR 714

Query: 692 YKDGGISDVICFKI 705
            ++G    V+   +
Sbjct: 715 LQNG--DRVVSMSV 726



 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 70/274 (25%), Gaps = 78/274 (28%)

Query: 508 ATLQQAMIEKEPI----TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
           A +    +  E       V  ++ G +R                A+   E   L  A   
Sbjct: 617 AAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMKLPEDVELVNARIC 676

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--------- 608
              D ++L++  G+A   P  ++   +G        I L +   +V+  V          
Sbjct: 677 SEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSMSVIRHFEAEPWE 736

Query: 609 -------------------------------------------DSTCKLLVVSSKGNAFI 625
                                                      D+   +L ++  G   +
Sbjct: 737 RAEFIKRFRTILGAEMEDDAAETDEDAVEGEGVLTDERYQEMQDAQDLILTITVTGLGKL 796

Query: 626 VEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               +     R G+    +S+  +          +  D + +     + +   ++ I   
Sbjct: 797 SSSHDYPVRGRGGQGVKAISAGPRGGTLAASFPVLMDDQIMLATSGGQSIRVPVEGISFR 856

Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           SR  G             V  F   +G   +  A
Sbjct: 857 SRSAG------------GVRVFNTSKGEEVVSVA 878


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/834 (31%), Positives = 407/834 (48%), Gaps = 111/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   +                                             
Sbjct: 720 RLASG--DRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPT 777

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 778 RYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/755 (35%), Positives = 429/755 (56%), Gaps = 23/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMS++G
Sbjct: 1   MSDEIIINRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEA++++ AE++L  + +  VD+   ++    EP V P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTEAKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGVTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HNV+E+  A   L+DN +  +  +L ++ GPD+PT   I+  +  I + Y 
Sbjct: 181 VGMATDIPPHNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQKLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA +  E        +V+T +P+Q   ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIKMRAVYSEESGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D   LM+ +F  +D+E  + +N+N++ +   PQV  L  IL 
Sbjct: 296 SDHENPTRLVITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R++ + RR  +R+  +  R+ IL+GLLIA+LNIDE+I IIR  DKPKP ++SRF 
Sbjct: 356 EWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMSRFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL L+LR L KLEE +IK E D L AE++K+  LL S ++    I  EI   
Sbjct: 416 LSDKQAEAILELKLRHLAKLEEMKIKGEQDELAAERDKLQQLLGSDRRLKTLIKKEILAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E     KA  ++ ++  E +TVV+S +GW R  K H +D   
Sbjct: 476 AEKYGD-----DRRSPIVERGE-AKALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD    +    +    + + + G+ ++  A  L S R  GE +     +   +  
Sbjct: 530 LSYKAGDGYLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
             A +     K LV S  G  F+    ++++  + GK +L + +  K+     VT    D
Sbjct: 590 QHAIMAQDDSKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-ID 713
               +    ++L+F +  +P + +GKG +L +              I   + +G    + 
Sbjct: 650 WCLSISNEGRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIKVG 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  R+   S  DL  + G+RG  G+ +P+G  R  
Sbjct: 710 AGKRNMTLSAEDLTHYQGERGRRGNKLPRGLQRVD 744


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/849 (29%), Positives = 410/849 (48%), Gaps = 107/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  +IDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +             
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE--------RL 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V  S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSYK----- 693
              K + F+                           D    +  GK GVR          
Sbjct: 710 NLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMR 769

Query: 694 ------DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DG I  +I F       GL  + +    Y +           +GG G++     
Sbjct: 770 GMRLPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTG 829

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 830 ERNGDLVAA 838



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 52/278 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGDSL
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN------------------------LLS 582
             A     +D I+L S  GKA     Y   +GN                        L  
Sbjct: 694 IGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPG 753

Query: 583 GRGHGEAIQLLID------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
           G+                 L  +  IV+   + +       ++L  ++ G       ++ 
Sbjct: 754 GKYGVRPSGRGSGGMRGMRLPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADY 813

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R   G
Sbjct: 814 SRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAG 873

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           V+L +  D G + V   ++ E  T  D        S  
Sbjct: 874 VKLINL-DEGETLVSLERVAEEETETDMPETEAGTSPE 910


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/755 (36%), Positives = 459/755 (60%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +AA+ LIDNP+  +  ++E++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        I++T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWKKEG-----PEIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILAEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +RR  + RR  +R+  +  R+ +L+GLL+AYLN+DE+I IIRNED+PK  ++SRF LTE
Sbjct: 357 EYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEPKAELMSRFGLTE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E++K+++LL S ++    +  EI    E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKERKKLETLLGSERRLNTLLKKEIEADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E     KA  ++ ++  EPITVV+S++GW+R  K H +D + L++
Sbjct: 477 YGD-----DRRSPLIEREE-AKALTERDLVPSEPITVVLSDKGWVRHAKGHELDPATLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         ++  ++LL +DG++Y+L + +L S R  GE I   ++++   +I   
Sbjct: 531 KSGDKYLAHARGKSSQPVVLLGSDGRSYSLESHSLPSARSQGEPITGRLNISSGSNIRHL 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++ ++ GK  + +    ++     +  +  D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            V    ++L+F I  +P++ +GKG ++ +        +D  +S +I       +T + + 
Sbjct: 651 AVTNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKSRDEFVSHLIALPKGRTVT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R     E+DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKESDLDSFRGERGRRGGLLPRGLQRVTRI 744


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/768 (34%), Positives = 417/768 (54%), Gaps = 35/768 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS       RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSSP-----RRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             LI L  ++ I+       +     L   +  G       SE  +N   G   + +   
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFDSN-YNGMRAIVLDEG 646

Query: 648 EKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +++    +V     H+ +       + F ++ + E+ R  +GVR     +          
Sbjct: 647 DELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVI 706

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 707 SDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 754


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 246/761 (32%), Positives = 389/761 (51%), Gaps = 34/761 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  V LR  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM + G     A
Sbjct: 1   MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F K AR+VG+V+G+ HPHGD ++YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 61  FSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ +DED VDF   Y+ E  EP V P +FPNLL NG+ GIAVGMAT+I
Sbjct: 121 TETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN+ E+   AL  ++NP+ + E+    LLE I GPDFPTG  ++++   I ++Y  GR
Sbjct: 181 PPHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDT-GGIKDAYLTGR 239

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
           G   +R    +EE+  G  C+VV E+PYQV    L  KIA L+   ++  + DIRDE S 
Sbjct: 240 GSVVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSG 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ S++  + ++  F +NM  +  G  P+ + L   ++ W+ 
Sbjct: 299 RTGQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGA-PRTLSLCSFIRLWVE 357

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--- 423
           H+ EV+ RR++FR+   ++R  IL+  L A   IDE+I +IR+    +    +  +L   
Sbjct: 358 HQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMALLKI 417

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL+L+LR L  LE  +I SE   +         +L+    Q   IA E+RE+ 
Sbjct: 418 DETQARAILDLQLRRLAALERQRIISEAREIEELISSFRKILSDKTAQCQVIAEELREIG 477

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           +  S +     RRT        D +   + +I  EP+ VV++  G+I+            
Sbjct: 478 QKHSDA-----RRTEII--RGFDGSVSIEDLIPVEPVVVVMTRCGYIKRTRIDQYRSQHR 530

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               +     K  D +   +   T + ++  +  G+ Y   A  +   S    G+ +  L
Sbjct: 531 GGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEVPEASREARGQHVANL 590

Query: 594 IDLNHNQ---DIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           + L  N+    I++   +D     L++ +  G        E   +   G   +K+   +K
Sbjct: 591 LPLKPNEAVTRILSVSNFDSEDTSLVLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDK 650

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +   V    D  + +V +N + L F    +  +SRG  GV+  S ++  +       + +
Sbjct: 651 LVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRGSYGVKGISLRENDLLLSAELILSD 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                  + R Y +        L  RGG+G  V     + G
Sbjct: 711 DSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQKG 751



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 76/197 (38%), Gaps = 13/197 (6%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ +  G+++       D S      A+  + GD L  A+ A +   I+L++ + ++   
Sbjct: 616 VLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            +G L         ++ +    ++  +    +      + VVS +G A      +     
Sbjct: 676 KSGTLRPLSRGSYGVKGISLRENDLLLSAELILSDDSYIFVVSERGYAKRSRVGDYKLQA 735

Query: 636 RKGKTF--LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQ 690
           R G       ++ ++ +   + V    D V V+  + K++  S+ ++ P +    GV   
Sbjct: 736 RGGIGVRVANITEQKGVLADMLVVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFV 795

Query: 691 SYKDGGISDVICFKICE 707
              DG    ++   I E
Sbjct: 796 RMSDG--DKILAMTIAE 810


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 247/851 (29%), Positives = 408/851 (47%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL E+L HRREV+ RR+ FR++       I +G  +A  NID II +I+          
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKD 417

Query: 419 SR---------------------------------------FSLTENQVDAILNLRLRSL 439
                                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 916


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 236/785 (30%), Positives = 392/785 (49%), Gaps = 45/785 (5%)

Query: 3   VDNISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +   +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM
Sbjct: 26  ISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+ 
Sbjct: 86  YDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSA 145

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+S
Sbjct: 146 GDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSS 205

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   +
Sbjct: 206 GIAVGMATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATIL-GHK 264

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  
Sbjct: 265 GIEQAYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQG 323

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + 
Sbjct: 324 IADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLS 382

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKP 413
           LD  ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDEII +IR+    +  
Sbjct: 383 LDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDA 442

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +P ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q  
Sbjct: 443 RPKLMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRT 502

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+   +        RRT     S        + +I +E + V +++ G+I+  
Sbjct: 503 IVGDELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRT 554

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR- 584
                         +     +E D +       T + +L  +  G+ Y + A  L  G  
Sbjct: 555 KANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSR 614

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G  
Sbjct: 615 DSKGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLI 674

Query: 641 FLKVSSE-------EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRL 689
            ++++++       +++         D + +V +    L F+   DQ+  M R   GV+ 
Sbjct: 675 AVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQG 734

Query: 690 QSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++ D  +  +           +      + +        L  R G G    +     G
Sbjct: 735 MKFRGDDELLAMDVVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRG 794

Query: 749 KFLSS 753
             + +
Sbjct: 795 SLVGA 799



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   +  D I+L+S  G +    A N      GR     +Q +     ++ + + 
Sbjct: 689 DELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA-GVQGMKFRGDDELLAMD 747

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               DS   LLVV+++G A     SE     R G     V   E     +  ++    D 
Sbjct: 748 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGALIVSEDDQ 807

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++  ++ ++    R   GV L     G   ++I     E
Sbjct: 808 VMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 853


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/749 (36%), Positives = 435/749 (58%), Gaps = 25/749 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+ + +SL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+GL   A FKK
Sbjct: 9   ESDETISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKK 68

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 69  SARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTE 128

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+T  +E++L  + +  V++   ++    EP V P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 129 SRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTGIAVGMATDIPP 188

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+  A + L+ NP+ ++ +L+E+++ PD PT   I+ S + I   Y  GRG  R+R
Sbjct: 189 HNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTMYETGRGSLRMR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
             W  E+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDES  +   R+
Sbjct: 249 CIWGQEDGD-----IVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRL 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM  +F  +D+E  + +NMN++ +  +P V PL+ IL EWL+ R   
Sbjct: 304 VIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPLNVILTEWLSFRMVT 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  + +R+ IL+G L A+LNIDE+I IIR EDKPK V++ RF +T+ Q +AI
Sbjct: 364 VRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKPKQVLMDRFGVTDIQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+LR + KLEE +I+ E D L  E E ++ +L S  +  N +  E++ + E +     
Sbjct: 424 LELKLRQIAKLEEIKIRGEQDELAKEGEWLEGILASATKLKNLVKKELQAIAEKY----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G  R +   V    +A  +  ++  +PITVV+S +GWIRS K H VD +AL +K GD+ 
Sbjct: 479 -GNDRRSPIVVRGEAQALSEMDLLTSDPITVVLSEKGWIRSAKGHDVDPAALSYKAGDAY 537

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             +    T    LL+ + G++Y L +  L S RG GE     ++           +    
Sbjct: 538 MFSAKGKTNQNALLIDSTGRSYALASHTLPSSRGQGEPASGRLNPPSGAVFTGLLMGVEK 597

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668
            ++L+ S  G  F+ E   +    + GK  L +    ++     +      +VA      
Sbjct: 598 QRVLIASDAGYGFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADAYVAAASNEG 657

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF +  +PE++RGKG ++ S        ++  +  +      + LT + S  R    
Sbjct: 658 RLLIFPLSDLPELARGKGNKMLSIPGARVEAREEFVVSIAVIHSKQKLT-VYSGKRHTTF 716

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              DL  + G+RG  G  +P+GF +    
Sbjct: 717 KMADLEHYKGERGRRGHKLPRGFQKVDSI 745


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 277/755 (36%), Positives = 438/755 (58%), Gaps = 21/755 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLTAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASCAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R+ + S  DL  ++G R   GSL+P+G+ +  + 
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVDRL 744


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/834 (31%), Positives = 407/834 (48%), Gaps = 111/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   +                                             
Sbjct: 720 RLASG--DRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPT 777

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 778 RYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 235/785 (29%), Positives = 392/785 (49%), Gaps = 45/785 (5%)

Query: 3   VDNISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +   +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM
Sbjct: 4   ISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAM 63

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+ 
Sbjct: 64  YDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSA 123

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+S
Sbjct: 124 GDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSS 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   +
Sbjct: 184 GIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHK 242

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  
Sbjct: 243 GIEQAYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQG 301

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + 
Sbjct: 302 IADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLS 360

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKP 413
           LD  ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+    +  
Sbjct: 361 LDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDA 420

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +P ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q  
Sbjct: 421 RPKLMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRT 480

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+   +        RRT     S        + +I +E + V +++ G+I+  
Sbjct: 481 IVGDELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRT 532

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR- 584
                         +     +E D +       T + +L  +  G+ Y + A  L  G  
Sbjct: 533 KANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSR 592

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G  
Sbjct: 593 DSKGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLI 652

Query: 641 FLKVSSE-------EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRL 689
            ++++++       +++         D + +V +    L F+   DQ+  M R   GV+ 
Sbjct: 653 AVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQG 712

Query: 690 QSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++ D  +  +           +      + +        L  R G G    +     G
Sbjct: 713 MKFRGDDELLAMDVVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRG 772

Query: 749 KFLSS 753
             + +
Sbjct: 773 SLVGA 777



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   +  D I+L+S  G +    A N      GR     +Q +     ++ + + 
Sbjct: 667 DELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA-GVQGMKFRGDDELLAMD 725

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               DS   LLVV+++G A     SE     R G     V   E     +  ++    D 
Sbjct: 726 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGALIVSEDDQ 785

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++  ++ ++    R   GV L     G   ++I     E
Sbjct: 786 VMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 831


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/849 (29%), Positives = 409/849 (48%), Gaps = 107/849 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+      + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L+  +I     NL+ +      +L+  ++    I  E+ E+K  +             
Sbjct: 478 TGLDREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDE--------RL 529

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 530 SEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V  S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------------DQIPEMSRGK-GVRLQSYK----- 693
              K + F+                           D    +  GK GVR          
Sbjct: 710 NLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMR 769

Query: 694 ------DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 DG I  +I F       GL  + +    Y +           +GG G++     
Sbjct: 770 GMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTG 829

Query: 745 PRSGKFLSS 753
            R+G  +++
Sbjct: 830 ERNGDLVAA 838



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 52/278 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGDSL
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN------------------------LLS 582
             A     +D I+L S  GKA     Y   +GN                        L  
Sbjct: 694 IGAAQTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPG 753

Query: 583 GRGHGEAIQLLID------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
           G+                 L  +  IV+   +         ++L  ++ G       ++ 
Sbjct: 754 GKYGVRPSGRGSGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADY 813

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R   G
Sbjct: 814 SRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAG 873

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           V+L +  D G + V   ++ E  T  D        S  
Sbjct: 874 VKLINL-DEGETLVSLERVAEEETETDMPETEAGTSPE 910


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 278/753 (36%), Positives = 437/753 (58%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++EGD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYREGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   GSL+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVD 742


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/851 (29%), Positives = 415/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +   +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG GS+   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGSIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSGASVISNVTEPEAEN 916


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/753 (36%), Positives = 435/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL     ++PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 221/822 (26%), Positives = 390/822 (47%), Gaps = 85/822 (10%)

Query: 5   NISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
            ISN+      E V  +++   ++  +L Y++S I  RA+PD+RDG KP  RRI+ AM +
Sbjct: 11  PISNTPLFAANEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHD 70

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L      +K A+I G+  G  HPHG+  +Y +LV +AQP+  R  LI GQGNFG+I+G
Sbjct: 71  LSLYPNRQHRKCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEG 130

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEARMT +   ++  +++D VDF   Y+E   EP VFP+ FPNLL NG +GI
Sbjct: 131 DPPAAMRYTEARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGI 190

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+ +   A ID+P I++ +L++YI GPDFPTG + V   E I + +
Sbjct: 191 AVGMATNMAPHNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCM-VCGLEGIKKYF 249

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  ++R +  VE++  G   IV++ +P+ V  ++L E+IAEL+  K I  +  +R+
Sbjct: 250 ATGRGQIKMRGKVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRN 309

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES E+ RIV+  K R   P +++ +++  + +E+ F +N   +     P+ + L  ++  
Sbjct: 310 ESDENTRIVIELK-RDASPKVVINNLYNHTSLESSFAVNALAI-DHGRPKTLGLKDLINA 367

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------ 417
           ++ HRREV+ RR+ F ++  + R E L+G LIA  N+DE I IIR+    +         
Sbjct: 368 YIEHRREVIMRRTRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAF 427

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  R++ +E Q +AIL+LRL  L  LE  ++++E   L+ 
Sbjct: 428 DFNRQQVEQIGILIRDEARLTNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIE 487

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             + +  +L    +    I  E+RE+KE ++             ++   +     + +I 
Sbjct: 488 RIKDLLDILAKESRVLEIIKAELREIKEKYATP--------RMTDLVPDEGEMALEDLIT 539

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG--------DSLKIALHAHTT 560
            E + + I++ G I+          +     +  +  +EG        D ++    A T 
Sbjct: 540 NEGVIITITHGGLIKRTNVSSYRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTH 599

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF------------ 606
           D ++  +  G+ +      +   +    G +I  L++L   + I                
Sbjct: 600 DYLMFFTNSGRVFVERVHEIPDMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKED 659

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--------- 656
             +  + +L   + +G       ++     + G   + +   + +  V            
Sbjct: 660 QTWTQSGELFFATQQGTVKKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADG 719

Query: 657 ----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                G+ V ++      + F+   +  M R   GVR  + +       +   + +  T 
Sbjct: 720 TVSDPGEDVVLITREGMSIRFAESNVRSMGRNATGVRGINLEKTDAVVALAVLVPD-ATL 778

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +      +  +     +  RGG G +  K   ++G  + +
Sbjct: 779 LVAGENGIGKRTDFGEYRVQSRGGKGIITMKTNDKTGGVVGA 820



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 6/150 (4%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++L++ +G +      N+ S   +   ++  I+L     +V   V      LLV    G 
Sbjct: 728 VVLITREGMSIRFAESNVRSMGRNATGVRG-INLEKTDAVVALAVLVPDATLLVAGENGI 786

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQI 678
               +  E    +R GK  + + + +K   VV        D + ++ E  +++  S+  I
Sbjct: 787 GKRTDFGEYRVQSRGGKGIITMKTNDKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDI 846

Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICE 707
            E  R  +GV+L + + G     I   I E
Sbjct: 847 REAGRNTQGVKLINLEAGDKLQAISPVISE 876



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 521 TVVISNRG--------WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V+I+  G         +RS+  ++  +  ++ ++ D++           +L+   +G  
Sbjct: 728 VVLITREGMSIRFAESNVRSMGRNATGVRGINLEKTDAVVALAVLVPDATLLVAGENGIG 787

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                G        G+ I  +   +    +V A       ++++++  G    +   +I 
Sbjct: 788 KRTDFGEYRVQSRGGKGIITMKTNDKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIR 847

Query: 633 ANTRK--GKTFLKVSSEEKMKLVVKVTGDH 660
              R   G   + + + +K++ +  V  + 
Sbjct: 848 EAGRNTQGVKLINLEAGDKLQAISPVISEE 877


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/844 (29%), Positives = 391/844 (46%), Gaps = 115/844 (13%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  +S+   +++ YL YA+S I  RAIPD RDG KPVHRRI+ +M E G       +
Sbjct: 23  EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+VIGK HPHGD +VYD+LVR+AQ F  R PL+ GQGNFG+ID D  AA RYTE
Sbjct: 83  KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   AE +L  +D+D VDF +TY+ E  EP V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A + LID P +S E+LL  + GPDFPTG   +  +    ++   GRG   +R
Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGA-SIMGQSGARQALLTGRGSVVMR 261

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A   VEEV +  + I+V++IP+QV K+ ++E+IA L+  K++  + D+RDES      V+
Sbjct: 262 ATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVV 321

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  + ++++ +++  S ++T F  N+  L+    P+ M L  +LK ++  R EV+ 
Sbjct: 322 IELKRDANAEVVLNNLYKQSPLQTSFAYNLLALN-RGRPEQMTLRTVLKSFVDFREEVVT 380

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422
           RR+   +     R  +L GL I+  NIDE++ +IR    P     +              
Sbjct: 381 RRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLASL 440

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q  AIL+LRL+ L  L   +I  EL +L  +      +
Sbjct: 441 VALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQI 500

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    +    I  E+ +V+E F+       R+T F +    +     + +I +E + V +
Sbjct: 501 LRDRDRVLTIIKDELADVRERFATP-----RKTQFIDAIEME----DEDLIAREDMVVTV 551

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           S+ G+++          +      S +  K+ D +      +T   +L  +  G AY L 
Sbjct: 552 SHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKLK 611

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              L  G     G+A   L+ L+  + +                 ++  +  GN    + 
Sbjct: 612 LWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNKL 671

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRG-K 685
           S+     + GK  +K+   + +  V +    + + +   N   + F +D +     R   
Sbjct: 672 SDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTST 731

Query: 686 GVRLQSYK---DGGISDVICFKI-------------------------CEGLT------- 710
           GVR   +K   + G   V+   I                          EG T       
Sbjct: 732 GVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRAAGEGETEGSDAEA 791

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 + +    Y +  +        RGG G        R+G+
Sbjct: 792 EGSEAALSTERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSARNGR 851

Query: 750 FLSS 753
            ++S
Sbjct: 852 VVAS 855



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 11/171 (6%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHT--TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             S  +  + FK  D               + + S + KAY   A  +    G GE    
Sbjct: 728 RTSTGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRAAGEGETEGS 787

Query: 593 LIDLNHNQDIVT----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             +   ++  ++    A +  +   +L  +  G        E   + R G+    + +  
Sbjct: 788 DAEAEGSEAALSTERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSA 847

Query: 649 KMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           +   VV        D + +V +  +L+   +  I    R  +GV++ + ++
Sbjct: 848 RNGRVVASFPVEDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRE 898


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 269/752 (35%), Positives = 439/752 (58%), Gaps = 23/752 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+ + L    E  YL Y++  I + A+P + DG KPV RRII+AMSE+GL   
Sbjct: 2   SDLTHDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELGLTNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+E+  AA+AL+D P  S++ LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQSGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA    E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRAVGKKED-----GSAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F  +D+E  + +NMN++ +   P V  L  IL EWLA
Sbjct: 297 NPTRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGLVEILTEWLA 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ 
Sbjct: 357 YRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDT 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  EI+   + +
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQTY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   R     E +   KA  +   +  EP+T+V+S  GW+RS K H +D + L +K
Sbjct: 477 GD-----DRLRRLTERAE-AKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A+   +   ++ + +  ++  +    L S R  GE +   +       I    
Sbjct: 531 AGDSF-AAVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGEPLTGKLTPPPGATIEQVL 589

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVV 664
           +     KLL+ S  G  F+   ++++A  R GK  + +    +    +++ G  D +  +
Sbjct: 590 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSI 649

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI--CEGLTWIDSAGRS 718
               ++L+F +  +P++S+GKG ++ S        G   +    +   +    +    R 
Sbjct: 650 TAAGRMLMFPVADLPQLSKGKGNKIVSIPAAQAAAGEDKLAWLFVLPPQASVTLYVGKRK 709

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 DL   L +RG  G+ +P+G  R  + 
Sbjct: 710 LTLRPEDLHEDLPERGRKGTQLPRGLQRIDRV 741


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/797 (30%), Positives = 391/797 (49%), Gaps = 69/797 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             + +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KKS
Sbjct: 69  KAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKS 128

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE R
Sbjct: 129 ARVVGDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVR 188

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +++  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP HN
Sbjct: 189 LKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHN 248

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E   A L ++ NPE +I+++++ +  PDFPTGGI +     + E+YR GRG   +RA+
Sbjct: 249 LRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGI-LYGLSDVHEAYRTGRGKAIIRAK 307

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +EE   G    I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    + 
Sbjct: 308 THIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++  ++  + ++  F +N+  L  G+ P+ + +  IL E+L+ RREV+ R
Sbjct: 368 ELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQ-PKQLNIKEILVEFLSFRREVVTR 426

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
            + FR      RV +++G  IA  N+D+ I IIR     K                    
Sbjct: 427 VTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMI 486

Query: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q   IL +RL+SL  LE+ +I +E   L
Sbjct: 487 KRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKEL 546

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +     +  +L   ++    IA  +  V   F              ++    +    + +
Sbjct: 547 VDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERK--------TQIVANAENVKTKDL 598

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I    + V +++ G+I+S         K       A   KEGD +     A T D +L  
Sbjct: 599 IPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCF 658

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSS 619
           +  G+ + L   ++  G     G  I  +++L  ++ +                + + ++
Sbjct: 659 TNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMATA 718

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G        +     R G   + +   + +       G H V +  +N K++ FS D++
Sbjct: 719 DGTVKKTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEV 778

Query: 679 PEMSRGK-GVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
             M R   GVR     +G  +  ++     E +T + +    Y +           RG  
Sbjct: 779 RAMGRAATGVRGMRLDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTK 838

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +S+
Sbjct: 839 GIISIQTTERNGKVVSA 855



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T    +S  D A      +     TV  +  G  ++ +     ++A++  EGD L  A  
Sbjct: 697 TAVLPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRR--AGINAINLLEGDVLVGAAV 754

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY--DSTC 612
                 ++L S +GK        +   R  G A   +  + L+  Q +++  V   D   
Sbjct: 755 TDGKHDVMLFSDNGKVVRFSEDEV---RAMGRAATGVRGMRLDEGQKVISMLVCGDDEDV 811

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +L  +  G       +E   + R  K  + + + E+   VV        D + ++    
Sbjct: 812 TVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTSTG 871

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           KL+   +++I  + R  +GV L S ++G
Sbjct: 872 KLVRTRVNEIRVLGRNTQGVTLISMEEG 899


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 253/851 (29%), Positives = 416/851 (48%), Gaps = 109/851 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +RA+   E +G+      IV+ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E+K  +        RR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    +  G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFS 709

Query: 666 ENRKLLIFS----------------IDQIP------------EMSRGK-GVR-------- 688
              K + F+                  +I              +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   DG I  +I F       GL  + +    Y +           +GG G++   
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 829

Query: 743 GFPRSGKFLSS 753
              R+G  +++
Sbjct: 830 TGERNGDLVAA 840



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 753

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 814 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 873

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E +   
Sbjct: 874 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEAEN 916


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 248/736 (33%), Positives = 392/736 (53%), Gaps = 60/736 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR
Sbjct: 23  ETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSAR 82

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM 
Sbjct: 83  PVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMD 142

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ 
Sbjct: 143 KPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLG 202

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A LALI+ P++ +E L++YI  PDFPTGG I+  R    ++Y  GRG   +RA+  
Sbjct: 203 EVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQIL-GRGGARKAYLEGRGSVIIRAKTR 261

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE+ +  + IV+ EIPYQV KS +IEKIAEL+  KRI  +  ++DES      V+    
Sbjct: 262 IEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELK 321

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R   P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +++ R EV+ RR++
Sbjct: 322 RDATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLKDFLSSFISFREEVVARRTA 380

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------------- 417
           + ++    R  +L GL +A  N+DE++A IR                             
Sbjct: 381 YDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRLI 440

Query: 418 ---------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                       ++L+E Q  AIL+LRL+ L ++   ++  EL  L A+ ++   +L S 
Sbjct: 441 DDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAAKIQEYLDILRSR 500

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I+ E+REVK+ F+       RRT   E++        + +IE+E + V +++ G
Sbjct: 501 SRIMAIISDELREVKDQFAVP-----RRT---EITDWSGDMEDEDLIEREDMVVTVTSGG 552

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+          +     L+ +  KE D +     A+T   +L+ +TDG  Y L    L
Sbjct: 553 YIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMVYKLKTWRL 612

Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632
            SG     G+A+  ++ ++    I      D      +  +++  +S G+      S+  
Sbjct: 613 PSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSAGDVRRNALSDFT 672

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRL 689
              R GK  +K+     +      +  D V +V    + + F    +     R   GVR 
Sbjct: 673 NVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVRVFKGRDSTGVRG 732

Query: 690 QSYKDGGISDVICFKI 705
               +G    V+   +
Sbjct: 733 VRLAEG--DRVVSMAV 746



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 59/214 (27%), Gaps = 31/214 (14%)

Query: 517 KEPITVVISNRGW--------IRSLK-SHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +E   ++++  G         +R  K   S  +  +   EGD +             +  
Sbjct: 698 EEDDVMLVTALGRAIRFRTTDVRVFKGRDSTGVRGVRLAEGDRVVSMAVIR----HFVAD 753

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFI 625
              +A  L     ++G       +    +   Q      A +  +   +L ++  G   I
Sbjct: 754 PQERAAYLKMRRAVAGLSEEAESEDEDTVEAGQLSPERYAEMSAAEDLILTITEGGTGKI 813

Query: 626 VEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM 681
               +     R G+    +        +     V   D + +     + +   +D I   
Sbjct: 814 SSSHDYPVRGRGGQGVTAMDKAMRGGPLVACFPVEIDDQIMLATSTGQSIRCPVDGISFR 873

Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           SR  G             V  F    G   +  A
Sbjct: 874 SRAAG------------GVKVFNTAPGEQVVSVA 895


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 435/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RY LI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL     ++PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/773 (30%), Positives = 389/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +     +D+P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 276

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 277 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 335

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 336 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 394

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 395 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQV 454

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L         +L   ++Q   I  E+ E+   +
Sbjct: 455 QADAILAMQLRTLTRMNRDKIVAEHEELQRRIADYIDILAKPERQRKIIGDELDEIVAKY 514

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 515 GDE-----RRTRILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 566

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 567 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 626

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I T      Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 627 APDETIQTVLSIPNYEVARYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 686

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDV 700
           +++         D + +V      L F  D   +  M R   GV+   ++        DV
Sbjct: 687 DELIGAALCNAQDDIILVSRLGMSLKFQADDEQLRPMGRQTAGVQGMKFRADDSLLAMDV 746

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     + L  + + G  + +        L  R G+G    +     G  + +
Sbjct: 747 VPSDSDKDLFVVTNEG--FAKRTAIGEYRLQGRNGLGVKAVQLVEGRGALVGA 797



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 22/202 (10%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 648 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAQDDIILVSRL 707

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +    +  ++       DS   L VV+++G A  
Sbjct: 708 GMSLKFQADD-EQLRPMGRQTAGVQGMKFRADDSLLAMDVVPSDSDKDLFVVTNEGFAKR 766

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               E     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 767 TAIGEYRLQGRNGLGVKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 826

Query: 682 SR-GKGVRLQSYKDGGISDVIC 702
            R  +GV       G +   I 
Sbjct: 827 GRNTQGVTFAKPDKGDMILSIA 848


>gi|332558057|ref|ZP_08412379.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
 gi|332275769|gb|EGJ21084.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N]
          Length = 920

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/834 (31%), Positives = 406/834 (48%), Gaps = 111/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 23  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 82

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++Y +LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 83  VGDTMGKYHPHGDGAIYYALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 142

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 143 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 202

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 203 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 261

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 262 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 673 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 732

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   +                                             
Sbjct: 733 RLASG--DRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPT 790

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 791 RYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 844


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 235/785 (29%), Positives = 392/785 (49%), Gaps = 45/785 (5%)

Query: 3   VDNISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +   +N   ++++N V    ++  + + YL YA+S I ERA+PD+RDG KPVHRRI++AM
Sbjct: 26  ISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            + G      + K AR V +V+G  HPHGD ++YDSLVR+AQP+  RY L+ GQGNFG+ 
Sbjct: 86  YDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSA 145

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             D  AA RYTE RM  +A  +++ +D+D VDF   Y+    EP V P++FPNLLANG+S
Sbjct: 146 GDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSS 205

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRE 237
           GIAVGMAT+IP HN++E+ E     +D+PE S E+LL      I GPDFPTG  I+   +
Sbjct: 206 GIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHK 264

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++YR GRG   +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  
Sbjct: 265 GIEQAYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQG 323

Query: 298 LEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D+RDE S    + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + 
Sbjct: 324 IADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLS 382

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKP 413
           LD  ++ W+ H+ EV+ RR+ +  +  + R  IL+GLL A   IDE+I +IR+    +  
Sbjct: 383 LDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDA 442

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +P ++    + + Q DAIL+++L  L  +E  +I  E + L+ +    + +L   ++Q  
Sbjct: 443 RPKLMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRT 502

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E+ E+   +        RRT     S        + +I +E + V +++ G+I+  
Sbjct: 503 IVGDELDEIVAKYGDE-----RRTKILPYSG---EMNVEDLIAEENVVVTVTHSGFIKRT 554

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR- 584
                         +     +E D +       T + +L  +  G+ Y + A  L  G  
Sbjct: 555 KANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSR 614

Query: 585 -GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ +  L+    ++ I T      Y+    L++ +  G       +E  +  + G  
Sbjct: 615 DSKGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATRTGKVKKTALAEYDSPRQGGLI 674

Query: 641 FLKVSSE-------EKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRL 689
            ++++++       +++         D + +V +    L F+   DQ+  M R   GV+ 
Sbjct: 675 AVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTAGVQG 734

Query: 690 QSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++ D  +  +           +      + +        L  R G G    +     G
Sbjct: 735 MKFRGDDELLAMDVVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRG 794

Query: 749 KFLSS 753
             + +
Sbjct: 795 SLVGA 799



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   +  D I+L+S  G +    A N      GR     +Q +     ++ + + 
Sbjct: 689 DELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA-GVQGMKFRGDDELLAMD 747

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               DS   LLVV+++G A     SE     R G     V   E     +  ++    D 
Sbjct: 748 VVPEDSKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGALIVSEDDQ 807

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++  ++ ++    R   GV L     G   ++I     E
Sbjct: 808 VMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 853


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 397/794 (50%), Gaps = 62/794 (7%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK- 412
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+    
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E ++L  +      +LNS ++
Sbjct: 419 ISAREKLQNDHKLSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKINLYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++ E FS             E+           +I  E   V+++  G++
Sbjct: 479 IFEIILEELNKIDERFSSPRK--------TEILDLGGGLDDIDLIANERSVVLLTEAGYL 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           + +           S   +    KE D +K+ +  +  D +LL S  G AY LPA  +  
Sbjct: 531 KRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPAYRVPM 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G     L+ +   + I +    D       LL+++  G       S        
Sbjct: 591 SSRTAKGTPSVQLLPIPREEKITSIVAVDSFVDDSYLLMLTKAGFIKRTALSAFSKIRSN 650

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           G   + +   + +  V     GD V +  +    + F   I+++  + R  +GV+  + +
Sbjct: 651 GLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDINELRPLGRTARGVKSMNLR 710

Query: 694 DG-------------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +G                          + D +     +G   + ++     +       
Sbjct: 711 EGDNLVSMDVLTSNLADQLAKIEYPKEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQF 770

Query: 729 WLGKRGGVGSLVPK 742
            L KR G+G    K
Sbjct: 771 RLQKRAGMGLRAIK 784



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 41/244 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +       +   ++++  G+I+        K  S  L A++ ++GD+L  
Sbjct: 606 IPREEKITSIVAVDSFVDDSYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
              +   D +L+ S  G A  + L    L         ++ + +L    ++V+  V    
Sbjct: 666 VRLSKEGDSVLIGSKTGMAIHFRLDINELRPLGRTARGVKSM-NLREGDNLVSMDVLTSN 724

Query: 609 -----------------------DSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLK 643
                                       +L+ S+ G    V  ++     R G     +K
Sbjct: 725 LADQLAKIEYPKEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIK 784

Query: 644 --VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISD 699
             +  ++ + L V   G+ + +V E   ++  + DQI + SR   GV+LQ   DG  +S+
Sbjct: 785 FRIKYDQLVSLKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLDDGDHLSE 844

Query: 700 VICF 703
           V+  
Sbjct: 845 VVLV 848



 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIA------------------------LHAHTTD--RI 563
           +R L   +  + +++ +EGD+L                           +  +++D   +
Sbjct: 694 LRPLGRTARGVKSMNLREGDNLVSMDVLTSNLADQLAKIEYPKEDLDDNVEENSSDGPWV 753

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+ S  G    +P       +  G  ++ +        +V+  V     +LL+V+ KG  
Sbjct: 754 LIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKYDQLVSLKVLGEGEELLLVTEKGVI 813

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
                 +I   +R   G    ++   + +  VV V  + +
Sbjct: 814 VRTNADQISQQSRAATGVKLQRLDDGDHLSEVVLVPREQI 853


>gi|332967948|gb|EGK07036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella kingae ATCC
           23330]
          Length = 918

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 242/841 (28%), Positives = 406/841 (48%), Gaps = 106/841 (12%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     +E + AVSL   +++ YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  +
Sbjct: 15  NDQQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 73

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DGD+AA
Sbjct: 74  WNGAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAA 133

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++A  +L  ++ED V+F D Y+  + EP+V P++FP LL NG+ GIAVGM
Sbjct: 134 AMRYTEIRMEKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGM 193

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ATSIP HN+++     L L+  PE  I +L++ I  PDFPTG   +     I   Y  GR
Sbjct: 194 ATSIPPHNLRDTLAGCLKLLREPETDINELIDIIKAPDFPTGA-TIYGLTGIRAGYHTGR 252

Query: 248 GGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G   +R++  +E +G+      I+V EIPYQV KS+L+EKI +L+  K I  + ++RDES
Sbjct: 253 GRVVIRSKTHIEPIGKNGEREAIIVDEIPYQVNKSKLVEKIGDLVRDKAIEGIAELRDES 312

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +D   ++    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L
Sbjct: 313 DKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEFL 371

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-- 420
            HRREV+ RR+ FR++       I +G  +A  NIDE+IA+I+     +  +  ++ R  
Sbjct: 372 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKQSADVETAREALLGRAW 431

Query: 421 ----------------------------------FSLTENQVDAILNLRLRSLRKLEEYQ 446
                                             + L++ Q  AIL + LR+L  L++ +
Sbjct: 432 QSALVSEMLSRSDLDLSMARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQDE 491

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E  +L+A    +  +L   ++    I  E+  ++  F      G  R +        
Sbjct: 492 IVKEYKDLMAVIVDLLDILAKPERVRQIIDDELVVMQTQF------GDERKSEINAVG-G 544

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I    + V +++ G+I++         K       A   K+ D ++    A+
Sbjct: 545 GDIADEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVAN 604

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
           T D ++  +  GK + +    L  G     G  I  +I L  N+ +        +     
Sbjct: 605 THDYLMCFTNLGKCHWIKVYRLPEGGRNSRGRPINNVIQLEENEKVSAILPVRDFPEDEY 664

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672
           +   ++ G    V+ S     + KG   + +   + +  V K +G   + +     K + 
Sbjct: 665 VFFATTLGMVKKVQLSAFKNVSVKGIKAIALRDGDSLVGVAKTSGSSDIMLFSNLGKAIR 724

Query: 673 FSI-----------------------------DQIPEMSRGKGVR----------LQSYK 693
           F+                               +   ++  KG+R               
Sbjct: 725 FNEFYNPTSNDDESEDVSGSLNDENSADDDNSSEFNLLT-NKGIRPSGRGSGGLRGMKLP 783

Query: 694 D-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + G I  ++  ++   L  + +    Y +           +GG G +      R+G+ + 
Sbjct: 784 ENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIEDYSRKGKGGQGIIAIDTGERNGELVG 843

Query: 753 S 753
           +
Sbjct: 844 A 844



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 80/247 (32%), Gaps = 49/247 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E +    A L      ++      +  G ++ ++  +        + A+  ++GDSL
Sbjct: 642 IQLEENEKVSAILPVRDFPEDEYVFFATTLGMVKKVQLSAFKNVSVKGIKAIALRDGDSL 701

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLID--------------- 595
                   +  I+L S  GKA       N  S     E +   ++               
Sbjct: 702 VGVAKTSGSSDIMLFSNLGKAIRFNEFYNPTSNDDESEDVSGSLNDENSADDDNSSEFNL 761

Query: 596 --------------------LNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIA 633
                               L  N  IV+  V +  S  ++L  +  G        +   
Sbjct: 762 LTNKGIRPSGRGSGGLRGMKLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIEDYSR 821

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             + G+  + + + E   ++     V+  D + ++     L+   ++QI E  R   GV+
Sbjct: 822 KGKGGQGIIAIDTGERNGELVGAALVSPSDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 881

Query: 689 LQSYKDG 695
           L +  +G
Sbjct: 882 LINLDEG 888


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/753 (36%), Positives = 438/753 (58%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++EGD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYREGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   GSL+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVD 742


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/753 (36%), Positives = 436/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRI++AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ S+  L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        I +  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IFIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL+ R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAEERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   GSL+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVD 742


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/784 (31%), Positives = 388/784 (49%), Gaps = 57/784 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  V++   +   ++ YA+S I  RA+PD RDG KPVHRRI+ A   +   +   + K 
Sbjct: 6   NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+VIGK HPHGD SVYD+LVR+AQ F  RY L+ GQGNFG+IDGD  AA RYTE R
Sbjct: 66  ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +L  +D++ VD++  Y++++ EP V P+K PNLL NG SGIAVGMAT+IP HN
Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+++P++  E+L E + GPDFPTG  I+  R  I  ++ LGRG   +R R
Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTG-GIIHGRGGIRAAHTLGRGAVVIRGR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E V +    IVVTE+P+ V KSR IE  A L+  KRI  + DIRDES      V+F 
Sbjct: 245 TQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++ ++F ++ ++T F +NM  +  G  PQV+ L   L+ ++ HRR V+ RR
Sbjct: 305 LKRDANEQVVLNNLFKMTALQTSFNVNMLAIVDG-RPQVLSLRSALQVFIEHRRTVVRRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF----------- 421
             F ++    R EI++GL +A + ID +I IIR     D+ K  ++S             
Sbjct: 364 CLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERA 423

Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+  Q  AIL++RL  L  LE  ++++E   L    + ++ +L
Sbjct: 424 GRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGIL 483

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               +    I  E+RE+++ ++       RRT   E+   +   L + +I+ E + V  +
Sbjct: 484 GDDVKLRGVIVDELREMRDQYADP-----RRT---EIVDQEGEILDEQLIKVEDMVVTRT 535

Query: 526 NRGWIRSLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            RG+++              K        + D +     A T D +L+ +  G+ Y    
Sbjct: 536 RRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKV 595

Query: 578 GNLLSGR--GHGEAIQLLID-LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI 631
             L SG     G     +I+ L  ++ +V       +       + +  G       +  
Sbjct: 596 YELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAF 655

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                 G   + +   +++  V     D  V +V +  + + F  DQ+  M R  +GVR 
Sbjct: 656 SRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREARGVRG 715

Query: 690 QSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                G  +  +  F+       +      Y +           RGG G +  K   R+G
Sbjct: 716 IGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNG 775

Query: 749 KFLS 752
               
Sbjct: 776 PVSG 779



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 28/216 (12%)

Query: 507 KATLQQAMIEKEPIT--------------VVISNRGWIRSL------KSHSVDLSALHFK 546
              + +A+   E +                + +  G ++        +     + A+   
Sbjct: 610 FVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAFSRIRVTGIKAIGID 669

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD L           +LL++  G++       +         ++  I L     +V   
Sbjct: 670 DGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMGREARGVRG-IGLAGGDAVVGMS 728

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDH 660
           V++  C+  +L V   G       S      R GK  + + + E+   +  V  V   DH
Sbjct: 729 VFERDCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNGPVSGVRLVGEDDH 788

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           V ++    KL+   +  IP  SR   GVRL     G
Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPG 824


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 241/766 (31%), Positives = 392/766 (51%), Gaps = 29/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG+ +  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGV-IYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L  G  P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNG-RPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR+   P   K  ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + E F      G  R T       +     + +I+KE + ++IS+ G+I+          
Sbjct: 479 IAEKF------GDERKTDIVADEVE-ELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  ++++  E D L     A T D I+ ++  GKAY L    +   S    G  I+
Sbjct: 532 NRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ ++ +++I        +D    LL+ ++ G    V          +G   +K+   +
Sbjct: 592 SLLSVSSDEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTDNFANAKTRGIIAIKLDEGD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           K+   +   G D + ++    + L  S + I    R  +GV                ++ 
Sbjct: 652 KLVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGVTGIKLSSED-ELTGALRVT 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E    +      Y +           RG  G  +     ++G+ + 
Sbjct: 711 ENQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEVVG 756



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 150/448 (33%), Gaps = 63/448 (14%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +L  A+    + +    + +++  V+     S DP     ++      +    +    + 
Sbjct: 373 DLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDD---VQAQAIV 429

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             ++ ++  L+               R+    +Q +         L     + ++I+A+I
Sbjct: 430 DMQLKRLTSLE-----------IEDLRKELQELQVLIAH------LKDLLAHPEKILALI 472

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK--EKIDSL- 464
           + E             T+   D +  L +  L K EE  I       +         S  
Sbjct: 473 KEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQN 532

Query: 465 ----------LNSGKQQWNQI----------------ACEIREVKEIFSKSTDLGRRRTT 498
                     L                          A  ++  +   +  T  G    +
Sbjct: 533 RGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKS 592

Query: 499 FCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSHSV------DLSALHFKEGDS 550
              VS  ++ T   ++ E +  T  ++ +  G ++ + + +        + A+   EGD 
Sbjct: 593 LLSVSSDEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTDNFANAKTRGIIAIKLDEGDK 652

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L  A+     D I+L++  G+A      ++ S       +   I L+   ++  A     
Sbjct: 653 LVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGVTG-IKLSSEDELTGALRVTE 711

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGE 666
             K+LV++  G    VE SE  A+ R   G+    +S    E + L+     D V  +  
Sbjct: 712 NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEVVGLLTVFDDDEVVCITG 771

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
             K +  S+D +  M R  +GVR+   +
Sbjct: 772 QGKTIRISVDSVGTMGRSAQGVRILDIE 799


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/797 (30%), Positives = 391/797 (49%), Gaps = 69/797 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             + +SL   ++  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+   +    KKS
Sbjct: 69  KAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKS 128

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD + Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTE R
Sbjct: 129 ARVVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVR 188

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +++  +L+G+DEDAVDF   Y+    EP V P+ FP LL NG++GIAVGMAT+IP HN
Sbjct: 189 LKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHN 248

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E   A L ++ NPE +I+++++ +  PDFPTGGI +     + E+YR GRG   +RA+
Sbjct: 249 LRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGI-LYGLSDVHEAYRTGRGKAIIRAK 307

Query: 256 WCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
             +EE   G    I++ EIPYQV K  L+EKIA+L+  K+I  +  +RDES ++    + 
Sbjct: 308 THIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++  ++  + ++  F +N+  L  G+ P+ + +  IL E+L+ RREV+ R
Sbjct: 368 ELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQ-PKQLNIKEILVEFLSFRREVVTR 426

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
            + FR      RV +++G  IA  N+D+ I IIR     K                    
Sbjct: 427 VTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMI 486

Query: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     + L+  Q   IL +RL+SL  LE+ +I +E   L
Sbjct: 487 KRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKEL 546

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +     +  +L   ++    IA  +  V   F              ++    +    + +
Sbjct: 547 VDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERK--------TQIVANAENVKTKDL 598

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I    + V +++ G+I+S         K       A   KEGD +     A T D +L  
Sbjct: 599 IPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCF 658

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSS 619
           +  G+ + L   ++  G     G  I  +++L  ++ +                + + ++
Sbjct: 659 TNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFMATA 718

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G        +     R G   + +   + +       G H V +  +N K++ FS D++
Sbjct: 719 DGTVKKTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEV 778

Query: 679 PEMSRGK-GVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
             M R   GVR     +G  +  ++     E +T + +    Y +           RG  
Sbjct: 779 RAMGRAATGVRGMRLDEGQKVISMLVCGDDEDVTVLTATEFGYGKRSPLAEYTRHGRGTK 838

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  +   R+GK +S+
Sbjct: 839 GIISIQTTERNGKVVSA 855



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           T    +S  D A      +     TV  +  G  ++ +     ++A++  EGD L  A  
Sbjct: 697 TAVLPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRR--AGINAINLLEGDVLVGAAV 754

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY--DSTC 612
                 ++L S +GK        +   R  G A   +  + L+  Q +++  V   D   
Sbjct: 755 TDGKHDVMLFSDNGKVVRFSEDEV---RAMGRAATGVRGMRLDEGQKVISMLVCGDDEDV 811

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            +L  +  G       +E   + R  K  + + + E+   VV        D + ++    
Sbjct: 812 TVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTSTG 871

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           KL+   +++I  + R  +GV L S ++G
Sbjct: 872 KLVRTRVNEIRVLGRNTQGVTLISMEEG 899


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 389/754 (51%), Gaps = 61/754 (8%)

Query: 1   MGVDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D+   +       +++ VS+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ 
Sbjct: 1   MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M E G      + KSARIVG+V+GK HPHGD ++YD+LVR+AQPF  R PLI GQGNFG
Sbjct: 61  SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  AA RYTE+R+ + A  +L+ +DE  VDF+  Y++++ EP V P++FPNLL NG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +AA+ALID P++S+ +L+E + GPDFPT   I+  R  I
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATIL-GRGGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG   +RA+  +E + +    I+ TEIPYQV K+ LIE+IAEL+  K+I  + 
Sbjct: 240 RNAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   ++    R    D+++  ++  + +++ FP+NM  L+ G  P+++ L  
Sbjct: 300 DLRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALN-GGRPELLTLKD 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------- 410
           +L  ++  R  V+ RR+ FR+        +  GL IA  NIDE+I +IR           
Sbjct: 359 VLVAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREA 418

Query: 411 ------------------DKPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                               P+ V+       L+E Q  AIL+LRL+ L  L   +I   
Sbjct: 419 LMERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEA 478

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+ L AE  +   +L S ++ +  +  E+  VK  ++       RRT   ++   D    
Sbjct: 479 LNKLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATP-----RRT---QIVDGDGDVE 530

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V +S+ G+I+          +      S +  KE D +     A T   
Sbjct: 531 DEDLIAREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTP 590

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KL 614
           +L  S+ G+AY      L   + +  G+A+  L+ L  N+ I T                
Sbjct: 591 VLFFSSLGRAYKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDA 650

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           +  +++G     + S+     R G   +K+   E +  V   +  D V +     + + F
Sbjct: 651 IFATTRGTVRRNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRF 710

Query: 674 SIDQIPE-MSRGK-GVRLQSYKDGGISDVICFKI 705
            +  +    SR   GVR  +        VI   I
Sbjct: 711 PVTDVRVFQSRSSMGVRGVAL--AAEDRVISLSI 742



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVA 662
           +  +   +L VS  G        E     R GK  + ++   +   +     V +G  + 
Sbjct: 797 MEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARNGKLVASFPVGSGAEIM 856

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +V +  +L+   ++ I  + RG               VI F   EG   +  
Sbjct: 857 LVTDGGQLIRCPVEGIRIVGRGT------------QGVIVFDTAEGERVVSV 896



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   Y +  +     +  RGG G +      R+GK ++S
Sbjct: 804 ILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARNGKLVAS 846



 Score = 44.4 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 81/275 (29%), Gaps = 20/275 (7%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-----VVISNRGWIRSLKSHSV--- 538
           +     G+       + + ++ T    + E E        +  + RG +R  K       
Sbjct: 611 AAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVRRNKLSDFSDV 670

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + A+   EG+++     A   D +LL + +G+    P  ++   +         + 
Sbjct: 671 RRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQSRSSMGVRGVA 730

Query: 596 LNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L     +++  +        +     L  ++       +E+       + +         
Sbjct: 731 LAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEAEESSASIELS 790

Query: 649 KMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           + +       + + + V EN      S  +     RG KG+   +        V  F + 
Sbjct: 791 EARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARNGKLVASFPVG 850

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            G   +                 +  RG  G +V 
Sbjct: 851 SGAEIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVF 885


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/769 (34%), Positives = 418/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 ISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|315452542|ref|YP_004072812.1| DNA gyrase, subunit A [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 245/759 (32%), Positives = 402/759 (52%), Gaps = 31/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++  ++ + +  +L+E YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 1   MQPKIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYT
Sbjct: 61  KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   +E +L+ +D+D +DF   Y+    EP + PS+ PNLL NG+SGIAVGMATSIP
Sbjct: 121 EARMAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H   EI +A + +++NP+  +  L+E + GPDFPTGG+ V  +  I+E+Y  GRG  +V
Sbjct: 181 PHRPDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGV-VYGKAGILEAYTTGRGRIKV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  VE+       I++ EIPYQV K++L+E+I+ L   K +  + ++RDES  +   V
Sbjct: 240 RAKSRVEK-HNNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  S+ME  F + +  +     P+V  L  +LK +L HR+ V+
Sbjct: 299 VIELKKDAYSEIVLNHLYKSSNMEITFSIILLAIYNKE-PRVFNLLELLKLFLVHRKSVV 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+   ++    R  IL+GL +A  + + +IA+I+        K +++    L+E Q  
Sbjct: 358 IRRTIHELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQTHHLSEEQSK 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE+ +I+ E   L  +   ++ +L +  +    I  E+ EVKE FS  
Sbjct: 418 AILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNADKLNALIKEELLEVKEKFSTP 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLS 541
                 R T  E     +    + +I  E + V IS++G+++          +      +
Sbjct: 478 ------RKTQIE--EDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLKVYEQQRRGGKGKN 529

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           + +  E D ++    A+T D IL ++  G+ + L    +        G A+  LIDL   
Sbjct: 530 SGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAIGRALVNLIDLQPG 589

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        +D+   L+  +  G     E S      R G   + +  ++ +     +
Sbjct: 590 ESIKATIPTKDFDADKSLVFFTKNGIVKRTELSAF-GRIRGGVRAIVLEEDDALVTAKII 648

Query: 657 TG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + FS++ + EM R  +GVR    ++G           +    + 
Sbjct: 649 DSSVQELFMASSKGMCIRFSVESVREMGRVARGVRGMRLREGDFVIGAGGVSSDEQKLLS 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +           RGG+G +  K  P++G  + 
Sbjct: 709 VSSKGIGKQTLAGAYRAQGRGGLGVIGVKITPKTGHLVG 747



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 11/188 (5%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIA-LHAHTTDRILLLSTDGKAYTL 575
           V  +  G ++  +  +        +     E D+L  A +   +   + + S+ G     
Sbjct: 608 VFFTKNGIVKRTELSAFGRIRGGVRAIVLEEDDALVTAKIIDSSVQELFMASSKGMCIRF 667

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
              ++         ++ +     +  I    V     KLL VSSKG           A  
Sbjct: 668 SVESVREMGRVARGVRGMRLREGDFVIGAGGVSSDEQKLLSVSSKGIGKQTLAGAYRAQG 727

Query: 636 RKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R G   + V     +   + +V    G  + ++ ++ K++   ++ I E  R   GV+L 
Sbjct: 728 RGGLGVIGVKITPKTGHLVGIVSVDEGQDLMLLTKSGKMIRMPMETIRETGRNASGVKLV 787

Query: 691 SYKDGGIS 698
             +   + 
Sbjct: 788 QMESDEVV 795


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/753 (36%), Positives = 435/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  +  N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RLSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL     ++PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/788 (31%), Positives = 396/788 (50%), Gaps = 66/788 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TFPQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ + VDF D ++    EPVV P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++  +L + I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQIL-GRSGIRDAYTSGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +       CI+VTE+PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGE-PQLLTLKQFLTVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++    R  +L+GLLIA  N+D +I +IR   +    +  ++ +F 
Sbjct: 360 EFRVETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E   L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I +       RRT   E+   +   +   +I  E   ++++ +G+I+ +   +     
Sbjct: 480 KTIHATP-----RRT---EIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFGAQS 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   KE D ++  L     D +L  S  G  YTLPA  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQIPAASRTARGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +      ++++ KG       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFREDVYFIMLTRKGYIKKTALSAFSNIRTNGLIAIVLGEGDQ 651

Query: 650 MKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVIC 702
           ++ V V    D + +       + F  D  QI  + R  +GV+    K G      D++ 
Sbjct: 652 LRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPLGRSTRGVKAMKLKKGDELISMDILS 711

Query: 703 FKICEGLTWI--------------------DSAG--------RSYNRSENDLLGWLGKRG 734
            ++  G++ +                     S G          Y +        L  R 
Sbjct: 712 SQVIAGISTVHEGEEEEDLLENEEELTVEETSGGPWILTITNGGYGKRVPVKQFRLQNRA 771

Query: 735 GVGSLVPK 742
           G+G  V K
Sbjct: 772 GLGVRVIK 779



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 24/172 (13%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IR L   +  + A+  K+GD L       +                    +++G      
Sbjct: 683 IRPLGRSTRGVKAMKLKKGDELISMDILSS-------------------QVIAGISTVHE 723

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSE 647
            +   DL  N++ +T         +L +++ G    V   +     R G     +K  S 
Sbjct: 724 GEEEEDLLENEEELTVEETSGGPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKFKSP 783

Query: 648 -EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            +++  ++ V   D + +V     ++  ++D I   SR   GVR+Q   +  
Sbjct: 784 SDRLASLLVVNEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDD 835


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 235/769 (30%), Positives = 384/769 (49%), Gaps = 79/769 (10%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ 
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ VDF   Y+  ++EP + P++ P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIP 121

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           NLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT GI +
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGI-I 180

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTE 240

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L  G+ P
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-P 299

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+    
Sbjct: 300 RLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPT 359

Query: 413 P---KPVMVSR-----------------------------------------FSLTENQV 428
           P   K  ++ R                                         + L++ Q 
Sbjct: 360 PPIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL +RL+ L  LE+ +I  E   ++A+   +  +L   ++    I  E+  ++  F  
Sbjct: 420 QEILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEF-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDL 540
               G  R +  E +  +  T  + +I  + + V +S+ G+         R+ K      
Sbjct: 478 ----GDERRSQIEHNATELDT--EDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGK 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A   KE D +     A+T D IL  S  G+ Y L    +   S    G  I  +  L+ 
Sbjct: 532 QAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSP 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I        +D    + + +SKG       +E     + G   + +   + +     
Sbjct: 592 GEKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADI 651

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL---- 709
             G H V +  +  K + F  + +  M R  +GVR  + ++G     +     E      
Sbjct: 652 TDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGE 711

Query: 710 -----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + + +    Y +           RG  G +  +   R+GK +++
Sbjct: 712 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAA 760



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 593 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 653 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 711

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 712 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 771

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 772 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 804


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/834 (31%), Positives = 406/834 (48%), Gaps = 111/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 23  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARP 82

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 83  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 142

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 143 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 202

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 203 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 261

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 262 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLIHFLTFREDVVARRTAY 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + F    +     R   GVR  
Sbjct: 673 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRVFSGRDSTGVRGI 732

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   +                                             
Sbjct: 733 RLASG--DRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAEADEEEDAVEAGQLSPT 790

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 791 RYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 844


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 239/728 (32%), Positives = 394/728 (54%), Gaps = 30/728 (4%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  R  L+ G GNFG++DGD AAA RYTEARM++++  +L+ +++D +D+ D Y+  + 
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EPV+ P++FPNLL NG+SGIAVGMAT+IP+H++ E+ +  LAL  +P+I+I  L+EYI G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPT G+I+  R  I  +Y  GRG   VR R  +EE   G   IV+TEIPYQV K+RL+
Sbjct: 181 PDFPTAGMIM-GRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLV 239

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E+IAEL   K+I  +  + DES      ++    R +   +++ ++F ++ ++T F +NM
Sbjct: 240 ERIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM 299

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+GL IA  NID I
Sbjct: 300 LALVDNH-PKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAI 358

Query: 404 IAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+ E  NL+A    
Sbjct: 359 IKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 418

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           + ++L   ++    I  E+ E+K  ++       RRT     +    +   + +I +E +
Sbjct: 419 LKAILADDERILEIIREELEEIKVKYADK-----RRTEIL--AGDLVSLEDEDLIPEEEV 471

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ RG+I+          +     +  +   E D ++  +   T D +L  +  GK 
Sbjct: 472 AITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKV 531

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVE 627
           Y      +        G  I  L+ +   + +        +     L   +  G      
Sbjct: 532 YRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTT 591

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            S+     + G   +++   +++  V    G  ++ +  ++ + + F  + I  M R   
Sbjct: 592 LSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAA 651

Query: 686 GVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           GVR    ++    +VI  ++ E     +    + Y +        L  RGG+G       
Sbjct: 652 GVRGIRLRED--DEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTIT 709

Query: 745 PRSGKFLS 752
            ++G  ++
Sbjct: 710 EKNGNLVA 717



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 557 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 616

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 617 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 675

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 676 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 735

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 736 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 769



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 551 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 609

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 610 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 668

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 669 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 728

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 729 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 771


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/753 (36%), Positives = 437/753 (58%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRNIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GDSL  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDSLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPGSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++   +    +V+    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL      +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVPATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   GSL+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGSLLPRGWQKVD 742


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 237/762 (31%), Positives = 389/762 (51%), Gaps = 32/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + + ++   +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L      +
Sbjct: 6   DEVIVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHR 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ ++ RY L+ GQGNFG++DGD  AA RYTE
Sbjct: 66  KCAKISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  ++  +D+D V+    Y+E   EP VFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 126 ARLTTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPP 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L L++NP  SI+ +++ + GPDFPTGG+I   R  I E++  GRG   +R
Sbjct: 186 HNLNELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYR-GIKEAFHTGRGKLILR 244

Query: 254 ARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
               VE  E       + + EIPY V KSRLIE IAELI  K I  + D+RDES +D   
Sbjct: 245 GVIRVEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R   P++++  ++  SD++  F  NM  L    +P+ M +  ++  W+ HR +V
Sbjct: 305 IVIELKRGEVPEVIINQLYKFSDLQITFGCNMLAL-DKGLPRTMNVKQLISVWIEHRIDV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +   + R  IL+G L A  ++DE++ +IR   N D+ +  ++ +F  TE Q 
Sbjct: 364 VRRRTRFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQFEFTERQA 423

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL+LRL  L  LE  +I  E   LL + + + ++L S       I  E+ ++++    
Sbjct: 424 NAILDLRLYQLTGLERDKINDEYQELLKKIDYLRAVLASEAMVKEIIREELLDIQKH--- 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 +     ++  A+     + +I  EP+ + IS   +I+          +     +
Sbjct: 481 -----HKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIKRMPVNTFREQRRGGQGV 535

Query: 541 SALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DL 596
           + +  K E D +K    A T D +L+ +  G+ Y L    +     +  G+ +  L+ D+
Sbjct: 536 TGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDI 595

Query: 597 NHNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I T      ++    +L+ + +        +E     RKG   L +   +++   
Sbjct: 596 RPEEKIATIQRVSSFEEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAA 655

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             V     V +       + F    +  M R  +GV+  + +      V C  +    + 
Sbjct: 656 RLVKPEQQVMLFTHQGMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESI 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+GK + +
Sbjct: 716 LVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERNGKVIGA 757



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 140/435 (32%), Gaps = 23/435 (5%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP--DLLMESIFMLSDMET 337
              ++ I  L    R+      RDE+  ++        R  +   DL +  +  L   + 
Sbjct: 383 EGYLKAIDHLDEVVRLIRASSNRDEARIELIKQFEFTERQANAILDLRLYQLTGLERDKI 442

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                  +  +  +  V+  + ++KE +     +  ++     +         +  +   
Sbjct: 443 NDEYQELLKKIDYLRAVLASEAMVKEIIR-EELLDIQKHHKSERQTQIIAAETEVNMEDL 501

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +  + +I  I  +D  K + V+ F         +  ++L+     EE  IK      +A 
Sbjct: 502 IANEPVIITISQDDYIKRMPVNTFREQRRGGQGVTGMQLKR----EEDVIKGLY---VAT 554

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +  +  + +     +I E                             + +  E+
Sbjct: 555 THDYLLIFTNLGRCYWLKVWQIPETGRK--SKGKPLINLLEDIRPEEKIATIQRVSSFEE 612

Query: 518 EPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E   ++ + R  ++              + AL   EGD L  A       +++L +  G 
Sbjct: 613 EACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQGM 672

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A      N+         ++       N  IV   V +    +LVV   G     +  + 
Sbjct: 673 AVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESILVVCENGFGKRSQVDDF 732

Query: 632 IANTRKG---KTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKG 686
               R G   ++ +      K+   + VT +  + ++    + +  +++ +  M R  +G
Sbjct: 733 RQTNRGGVGVRSIITSERNGKVIGALCVTDEDGMVMMSATGQTVRINMNDLRVMGRNTQG 792

Query: 687 VRLQSYKDGGISDVI 701
           V+L + K+      I
Sbjct: 793 VKLANLKENDYLVAI 807



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 75/216 (34%), Gaps = 11/216 (5%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +   I  + +  ++    +A +   VK+         RR+  +          +   ++
Sbjct: 599 EKIATIQRVSSFEEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAARLV 658

Query: 516 EKEPITVVISNRG--------WIRSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLL 566
           + E   ++ +++G         +R +   +  +     + E D +      +  + IL++
Sbjct: 659 KPEQQVMLFTHQGMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESILVV 718

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
             +G        +       G  ++ +I    N  ++ A        ++++S+ G    +
Sbjct: 719 CENGFGKRSQVDDFRQTNRGGVGVRSIITSERNGKVIGALCVTDEDGMVMMSATGQTVRI 778

Query: 627 EESEI--IANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             +++  +    +G     +   + +  + K+ G  
Sbjct: 779 NMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSE 814


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/750 (37%), Positives = 437/750 (58%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNAAAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +AA+ L+DNP++ ++ +L  I GPDFPT   I+  ++ I + Y 
Sbjct: 178 VGMATDIPPHNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE
Sbjct: 238 TGRGSIKMRATWHKED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  VRIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L 
Sbjct: 293 ADYENPVRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLT 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR   R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+
Sbjct: 353 EWLTFRRTTVTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AILNLRLR L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E 
Sbjct: 413 LSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        KA  +  M   EP+TV++S  GW+R  K H +D + 
Sbjct: 473 AKKYASP------RMSQLVEREEAKAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPAG 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD         +   ++ + + G++Y L   +L S R  GE +   + L     I
Sbjct: 527 LSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+    K++     
Sbjct: 587 EQVIMEPEKQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPEKLSESASL 646

Query: 663 VV--GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDS 714
           +V      ++LIF +  +P +S+GKG ++ S             V  F I E  +    S
Sbjct: 647 LVSLTSAGRMLIFPVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKITLKPEDLQKFRAERGRKGSQLPRGL 736


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/753 (36%), Positives = 439/753 (58%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+DNP+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++++F+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLMAKFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ +I ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQILAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GDSL  A+ + +T ++  L ++G+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDSLLAAVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 D+  + ++ SS G  F+     +    + GK  L +++  ++    +VT    D
Sbjct: 590 QVMASADNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL  +   +PE+ +GKG ++      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAVAASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+ + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARTMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 250/799 (31%), Positives = 390/799 (48%), Gaps = 79/799 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +    LR  +++ YL YA+S I  RA+PD RDGFKPVHRRI++AM+E+GL     F
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +  E +L+ +D D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A+I NPEI+  +L+ YI GPDFPTG  I+  R  I E+Y  GRG   
Sbjct: 184 PPHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSIT 242

Query: 252 VRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  
Sbjct: 243 MRGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R   P +++ +++  + ++  F  NM  L  G+ P+++ L   L  +L  
Sbjct: 303 EGMRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGK-PELLTLKRYLHVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R   + RR+ +  +  + R  +L+GLLIA  N+D IIA+IR   +    K  ++ RF L+
Sbjct: 362 RIHTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I  E   LL +   ++ +LN  ++    +  E  ++KE
Sbjct: 422 EPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADLNDILNRRERILEIVEQEAIQIKE 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------ 538
                     RRT         + T    +I  E   ++++ +G+I+ +  ++       
Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533

Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
               S    KE D +K  L     D IL  +  G AY L A  +   S    G  I  ++
Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQIPIGSRIARGVPIVQML 593

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  ++ I +      + +   L++++  G       S        G   + ++  ++++
Sbjct: 594 PIPRDEKITSLVAVGEFTNDEYLVMLTKGGYIKKTALSAFSNIRSNGLIAISLNEGDELR 653

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQ--IPEMSRG-KGVRLQSYK-------------- 693
            V     D   ++G      + F  D   +  + R  +GV+    K              
Sbjct: 654 WVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPLGRATRGVKSMKLKPNDELIGMDILPSF 713

Query: 694 ------------------------------DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                                         D            +G++ +    R Y +  
Sbjct: 714 IVATIPQLGGEEPEIEEEENTTAVEDVEDMDSSEELATTEVEPDGVSILVITTRGYGKRV 773

Query: 724 NDLLGWLGKRGGVGSLVPK 742
                 L  R G G +  K
Sbjct: 774 PVSQFRLQNRAGKGIIATK 792



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK---- 643
            A++ + D++ ++++ T  V      +LV++++G    V  S+     R GK  +     
Sbjct: 735 TAVEDVEDMDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFK 794

Query: 644 --VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISD 699
             +S +  + L V    D + ++     ++   I  I   SR   GVR+Q   K+  I+ 
Sbjct: 795 PHLSGDCVVALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAA 854

Query: 700 VICFKIC 706
           V    + 
Sbjct: 855 VALVPLS 861



 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 16/119 (13%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFK---EG 548
            E   + +      +       +VI+ RG+         R        + A  FK    G
Sbjct: 740 VEDMDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSG 799

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYT--LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           D +      H TD ++L+++ G      + A +  S    G  +Q    L+    I   
Sbjct: 800 DCVVALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQ---RLDKEDAIAAV 855


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 240/766 (31%), Positives = 390/766 (50%), Gaps = 29/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG+ +  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGV-IYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L  G  P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNG-RPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR        K  ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + E F      G  R T       +     + +I+KE + ++IS+ G+I+          
Sbjct: 479 IAEKF------GDERKTDIVADEVE-ELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  ++++  E D L     A T D I+ ++  GKAY L    +   S    G  I+
Sbjct: 532 NRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ ++ +++I        +D    LL+ ++ G    V          +G   +K+   +
Sbjct: 592 SLLSVSSDEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTDNFANAKTRGIIAIKLDEGD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           K+   +   G D + ++    + L  S + I    R  +GV                ++ 
Sbjct: 652 KLVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGVTGIKLSSED-ELTGALRVT 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E    +      Y +           RG  G  +     ++G+ + 
Sbjct: 711 ENQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKTGEVVG 756



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSH 536
           ++  +   +  T  G    +   VS  ++ T   ++ E +  T  ++ +  G ++ + + 
Sbjct: 573 LKVHEIQEASRTSRGSHIKSLLSVSSDEEITAVVSLKEFDDKTYLLMATAGGVVKKVTTD 632

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           +        + A+   EGD L  A+     D I+L++  G+A      ++ S       +
Sbjct: 633 NFANAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRSQGRSSRGV 692

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSS-- 646
              I L+   ++  A       K+LV++  G    VE SE  A+ R   G+    +S   
Sbjct: 693 TG-IKLSSEDELTGALRVTENQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSEKT 751

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            E + L+     D V  +    K +  S+D +  M R  +GVR+   +
Sbjct: 752 GEVVGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIE 799


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/805 (30%), Positives = 388/805 (48%), Gaps = 87/805 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM+E+GL     F
Sbjct: 4   SESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYT 123

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+T +    +L+ +D + VDF D ++    EP+V PS+ P +L NG+SGIAVGMAT+I
Sbjct: 124 ECRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E  +ALI NPEI+  +L++YI GPDFPTG  I+  + SI E+Y  GRG   
Sbjct: 184 PPHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQIL-GKASIREAYTTGRGSIT 242

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES  
Sbjct: 243 MRGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L  
Sbjct: 303 DGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQLLSLKQFLSVFLDF 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  +L+GLLIA  N+D II +IR+       K  ++  + L+
Sbjct: 362 RIETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELIDTYGLS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I  E + LL +   +  +L   ++    I  E+ E+K 
Sbjct: 422 EVQSDAILQMQLRRLTALEAQKITQEHEELLEKIADLLDILAKRERILEIIQTEVAEIKL 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--- 541
            F+        R T  E +  +    +  +I  E   ++++ +G+I+ +   + +     
Sbjct: 482 KFASP------RRTIIEHAEGE--IDETDLIANEQAIILLTEQGYIKRMPVSTFEAQSRA 533

Query: 542 -----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
                    KE D ++  L     D +L  S  G  Y L +  +   S    G  I  L+
Sbjct: 534 TRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIPVSSRTARGTPIVQLL 593

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      + +   L++++  G       S        G   + +   ++++
Sbjct: 594 PIPIEEKITSIVSVTEFSNEEYLIMLTRSGFIKKTVLSAFSNIRANGLIAISLEEGDQLR 653

Query: 652 LVVKVT-GDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI-- 705
            V      D + +       + F  + +Q+  + R  +GV+    + G   ++I   I  
Sbjct: 654 WVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPVGRATRGVKSMKLRAG--DELIGMDILP 711

Query: 706 ------------------------------------------------CEGLTWIDSAGR 717
                                                            +G   +     
Sbjct: 712 SSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDAEEIPTASSQGPWALVITTN 771

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
            Y +        L +R G G    K
Sbjct: 772 GYGKRVPVTQFRLQRRAGKGLTATK 796



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVT-GDHVAVVGENR 668
           LV+++ G    V  ++     R GK           +++ +  +  V   D + +V    
Sbjct: 766 LVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRIVNENDELMIVTSRG 825

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            ++  +++ I   SR   GVR+Q   +      +      G
Sbjct: 826 IIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSG 866



 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVSS 619
             L+++T+G    +P       R  G+ +      +      +    + +   +L++V+S
Sbjct: 764 WALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRIVNENDELMIVTS 823

Query: 620 KGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +G       + I   +R   G    ++  ++ +  V  V
Sbjct: 824 RGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALV 862


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 392/773 (50%), Gaps = 47/773 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++   L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K
Sbjct: 39  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 98

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            +R+VG+V+GK HPHGD ++YD+LVR+AQ +  R  L+ GQGNFG+   D AAA RYTE 
Sbjct: 99  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTEC 158

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP H
Sbjct: 159 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 218

Query: 195 NVQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ E     +++P+ S E+LLE     I GPDFPTG  I+   + I ++YR GRG  
Sbjct: 219 NMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGRGLI 277

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA    EE+  G  C+VVTE+PYQV   RL+  I E +   +I  + D+RDE S    
Sbjct: 278 TMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTG 336

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 337 QRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVNHQL 395

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
           +V+ RR+++  +  + R  IL+G L A   +DE+IA+IR     D  +  ++    + + 
Sbjct: 396 DVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLMELLDIDQV 455

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR+L ++   +I +E + L  +      +L   ++Q   I  E+ E+   +
Sbjct: 456 QADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDILAKPERQRKIIGDELDEIVGKY 515

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT     S        + +I +E + V +++ G+I+               
Sbjct: 516 GDE-----RRTKILPFSG---EMNVEDLIAEENVVVTVTHSGFIKRTKADEYRAQHRGGK 567

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
            +     +E D +       T + +L  +  G+ Y + A  L  G     G+ +  L+  
Sbjct: 568 GIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQF 627

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------ 647
             ++ I        Y+    L++ +  G       +E  +  + G   +++ ++      
Sbjct: 628 APDESIQAVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENA 687

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGI---SDV 700
           +++         D + +V +    L F  +   +  M R   GV+   +++G      DV
Sbjct: 688 DELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAGVQGMKFREGDELLAMDV 747

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     + L  + + G  + +        L  R G+G    +     G  + +
Sbjct: 748 VWGDSDKDLFVVTNEG--FAKRTAISEYRLQGRNGLGIKAVQLVEGRGSLVGA 798



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 24/207 (11%)

Query: 522 VVISNRGWIRSLKSHSVD------------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           V+ +  G ++       D            ++  + +  D L  A   +  D I+L+S  
Sbjct: 649 VLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKL 708

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFI 625
           G +    A +    R  G     +  +      +++   V   DS   L VV+++G A  
Sbjct: 709 GMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLAMDVVWGDSDKDLFVVTNEGFAKR 767

Query: 626 VEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
              SE     R G     V         +  +V    D V  + ++ K++  ++D++   
Sbjct: 768 TAISEYRLQGRNGLGIKAVQLVEGRGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRT 827

Query: 682 SR-GKGVRLQSYKDGGISDVICFKICE 707
            R  +GV       G   +++     E
Sbjct: 828 GRNTQGVTFAKPDKG--DEILSIARNE 852


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 267/751 (35%), Positives = 448/751 (59%), Gaps = 26/751 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNE-IINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+  A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G++  D 
Sbjct: 60  LNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSL-EDD 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAV
Sbjct: 119 AAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  
Sbjct: 179 GMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQ 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES
Sbjct: 239 GRGSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDES 293

Query: 306 AED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL E
Sbjct: 294 DHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHEILTE 353

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL+ RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L
Sbjct: 354 WLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNL 413

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   
Sbjct: 414 SDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADA 473

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L
Sbjct: 474 KTFADP-----RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGL 527

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            ++ GD         +   ++ L + G+ Y L   +L S R  GE +   I L     + 
Sbjct: 528 SYRAGDGYLAHTRGRSNQPVVFLDSTGRTYALDPTSLPSARSQGEPLTGKITLPEGATVE 587

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
              +     K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    
Sbjct: 588 QVLMAAPETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDIS 647

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713
           +  +    ++L+F + ++P +S+GKG ++ +        +   ++ ++  K  + L ++ 
Sbjct: 648 LVAMSSAGRMLVFPLAELPILSKGKGNKIINISAQAAKERSELLARLLLIKANQSLVFV- 706

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           S  R      +D+  + G+R   GS + +G 
Sbjct: 707 SGKRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/769 (30%), Positives = 384/769 (49%), Gaps = 79/769 (10%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY L+ 
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG++DGD+AAA RYTE R++++A  +L  +D++ V+F   Y+  ++EP + P++ P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIP 121

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           NLL NG+SGIAVGMAT+IP HN++E+ +  L L+ NP+ ++++L+E I  PDFPT GI +
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGI-I 180

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                + E YR GRG   +RA+   E++ RG    I+V E+PYQV K  L+E+IAEL+  
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTE 240

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           KR+  + DIRDES +    V+    R   P++++ +++  + ++  F +NM  L  G+ P
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-P 299

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +++ L  +L+ +L HRREV+ RR+ F ++    R  IL+GL +A  NIDE IAII+    
Sbjct: 300 RLLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPT 359

Query: 413 P---KPVMVSR-----------------------------------------FSLTENQV 428
           P   K  ++ R                                         + L++ Q 
Sbjct: 360 PPIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL +RL+ L  LE+ +I  E   ++A+   +  +L   ++    I  E+  ++  F  
Sbjct: 420 QEILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEF-- 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDL 540
               G  R +  E +  +  T  + +I  + + V +S+ G+         R+ K      
Sbjct: 478 ----GDERRSQIEHNATELDT--EDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGK 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
            A   KE D +     A+T D IL  S  G+ Y L    +   S    G  I  +  L+ 
Sbjct: 532 QAAATKEDDWIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSP 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I        +D    + + +SKG       +E     + G   + +   + +     
Sbjct: 592 GEKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADI 651

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL---- 709
             G H V +  +  K + F  + +  M R  +GVR  + ++G     +     E      
Sbjct: 652 TDGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGMNLEEGQQVIAMLVAPAETAGEGE 711

Query: 710 -----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + + +    Y +           RG  G +  +   R+GK +++
Sbjct: 712 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAA 760



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                 L     +++    + +++G ++              + A+   EGD L  A   
Sbjct: 593 EKINVILPVKQFDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADIT 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----- 612
                ++L S  GKA      ++         ++ + +L   Q ++   V  +       
Sbjct: 653 DGQHDVMLFSDAGKAVRFDENDVRPMGRQARGVRGM-NLEEGQQVIAMLVAPAETAGEGE 711

Query: 613 -----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAV 663
                 +L  +  G       SE   + R  K  + + + E+    +   +    D + +
Sbjct: 712 QAVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIML 771

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           +     L+   +D+I EM R   GV L +  +G
Sbjct: 772 ITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 804


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/846 (30%), Positives = 394/846 (46%), Gaps = 105/846 (12%)

Query: 1   MGVDN--ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D   I       E   + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               E G     A++KSARIVG+ +GK HPHGD ++YD+L R+ Q +  R PLI GQGNF
Sbjct: 61  WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++D D  A+ RYTEAR+ +VA+ +L  +D+D VDF+  Y+  + EP V P++FPNLL N
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +A LA +DNP ++I++L++ I GPDFPT  +I+     
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLIL-GTAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             ++Y  GRG   +RAR  +EE       IV+T IPYQV KS L+EKIAE    KRI  +
Sbjct: 240 ARKAYHEGRGSIIMRARHQIEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R   P++++  ++  +  ++ FP NM  +  G  P+V+ L 
Sbjct: 300 SDIRDESNREGVRVVIDLKRDATPEVVLNQLWRNTPAQSSFPANMLAI-RGGRPEVLNLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            I++ ++  R EV+ RR+ F +     R  IL GL+IA  N+DE++ IIR    P     
Sbjct: 359 DIIESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARE 418

Query: 419 ------------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                         + + L+E QV AIL+LRL  L  L   +I 
Sbjct: 419 TLLAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDEIG 478

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            EL+ L     +  S+L   ++ +  +  E+ EV+  F+             E++     
Sbjct: 479 DELEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRKS--------EITAPADG 530

Query: 509 TLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +IE+E + V I+  G+I+                 S +  K+ D++       T 
Sbjct: 531 IEDEDLIEREDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTSTH 590

Query: 561 DRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQDIVTAFVYDSTC----- 612
             +L  ST GK Y L    L  G     G  +  ++  L+ ++ I T             
Sbjct: 591 TPVLFFSTAGKVYRLKVWRLPEGGPTTRGRPVVNMLPALDKDETIATVLPLPEDEAEWGK 650

Query: 613 -KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVT-GDHVAVVGENR 668
             ++  ++KGN               GK  +K   +  +++  V  +   D V +   + 
Sbjct: 651 LSVVFATAKGNVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSG 710

Query: 669 KLLIFSIDQIPE-MSRG-KGVRLQSYKDGGISDVICFKI--------------------- 705
           K + F+ D++ E  SR   GVR  + K  G  +VI   I                     
Sbjct: 711 KAIRFAGDEVREFTSRTSTGVRGMTLK--GDDEVISLSILHRVGTTPDEREDYVRFAPWK 768

Query: 706 ------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                                   +      Y +  +        RGG G        R+
Sbjct: 769 GEKEGEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRN 828

Query: 748 GKFLSS 753
           G  ++S
Sbjct: 829 GPVVAS 834



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 52/238 (21%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEG--DSLKIALHAHTTDRILLLSTDGKA 572
            V  + +G +R     +          A+ F+E   D L        +D +LL +  GKA
Sbjct: 653 VVFATAKGNVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKA 712

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY------------------------ 608
                  +             + L  + ++++  +                         
Sbjct: 713 IRFAGDEVREFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKGEKE 772

Query: 609 --------------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKM 650
                              +L V + G   +    E     R G+    + +       +
Sbjct: 773 GEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVV 832

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
                   D + +V +  KL+   +D +  + RG  GVRL +   GG   V   ++ E
Sbjct: 833 ASFPATQADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNV-SGGEHVVSAVRLAE 889


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/843 (29%), Positives = 402/843 (47%), Gaps = 119/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALID+P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            F ++    R  +L GL IA  NIDE+I +IR    P+                      
Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +    +L+S
Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKDELLAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWI------- 712
           R  +   G    +I   I                             E +  +       
Sbjct: 726 RGINL--GDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVIEE 783

Query: 713 -------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKF 750
                                + + + +  +     +  RGG G        ++   G+ 
Sbjct: 784 GQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTAEIGEL 842

Query: 751 LSS 753
           +++
Sbjct: 843 VAA 845



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 75/280 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
               G R TT   +   + +             +  + RG +R  K             A
Sbjct: 623 PLAPGERITTILPLPEDETSWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 675

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L  +  
Sbjct: 676 MKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGDSDR 735

Query: 602 IVTAFV-------------------------------------------------YDS-- 610
           I++  +                                                 YD   
Sbjct: 736 IISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVIEEGQLSDDRYDELR 795

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 796 AREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPIDDGDQIM 855

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
           +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 856 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 895


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/768 (33%), Positives = 393/768 (51%), Gaps = 62/768 (8%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D+  N       ++K VSL   ++  YLAYA+S I  RA+PD+RDG KPVHRRI+ +M E
Sbjct: 3   DHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHE 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
                   + KSARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PLI GQGNFG++DG
Sbjct: 63  NNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDG 122

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTE+R+ + A  +L  +D D VDF+  Y+ ++ EPVV P++FPNLL NG  GI
Sbjct: 123 DPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGI 182

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A +ALIDNPE+SIE+L   + GPDFPTGG  +  R  I  +Y
Sbjct: 183 AVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGG-SILGRAGIRSAY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   +RA+  +EE+      ++VTEIPYQV K+ LIEKIAEL+  KRI  + D+RD
Sbjct: 242 ATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRD 301

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++    R   PD+++  ++  + +++ FP NM  L+ G  P+ + L   L  
Sbjct: 302 ESDRQGMRIVIEIKRDAVPDIVLNQLWRYTALQSSFPCNMIALN-GGRPETLTLRDFLTA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------- 410
           ++  R EV+ RR+ + +        +  GL IA  NIDE+I +IR               
Sbjct: 361 FIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCAR 420

Query: 411 --------------DKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                           P+          L+E Q  AIL LRL+ L  L   +I   L+ L
Sbjct: 421 DWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKL 480

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            AE      +L S  + +  I  E+  VKE  +       RRT   +   +D     + +
Sbjct: 481 AAEIADYLDILGSRARLFGIIKDEMIAVKEAHATP-----RRTIILD---SDAGVDDEDL 532

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I++E + V +S+ G+I+          +      S +  ++ D +     A T   +L  
Sbjct: 533 IQREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFF 592

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVS 618
           S+ G+ Y      L   + +  G+A+  ++ L  ++ I T        K      ++  +
Sbjct: 593 SSRGQVYKEKVWRLPLSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFAT 652

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
           ++G     + S+     R GK  +++   E++  V   T  D V +   N + + F++  
Sbjct: 653 TRGTVRRNKLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTD 712

Query: 678 IPEMSRGK---GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           +    +G+   GVR  +  +G    VI   I   +        +Y + 
Sbjct: 713 VRVF-KGRDSMGVRGIALGEG--DRVISLAILRHIEADSDERTAYLKR 757



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGE 666
              +L +S+ G        E     R GK  + ++   +   +   + V  GD + +V  
Sbjct: 799 EQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVASMPVEEGDGIMLVTN 858

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +L+   ++ I    RG               VI F   E    +  
Sbjct: 859 GGQLIRCPVEGIRVAGRGT------------QGVIVFNTAEDEQVVSV 894



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 77/282 (27%), Gaps = 30/282 (10%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV----- 538
              LG+       + + ++ T    + E E        +  + RG +R  K         
Sbjct: 611 PQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRNKLSDFAQVNR 670

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               A+   EG+ +         D +LL + +G+       ++   +G        I L 
Sbjct: 671 AGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRDSMGVRGIALG 730

Query: 598 HNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRK------GKTFLKVS 645
               +++  +              +   +  A    E               G T L + 
Sbjct: 731 EGDRVISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEEALGSTSLSLE 790

Query: 646 SEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
              +M       G+ + + +  N      S  +     RG KG+   +        V   
Sbjct: 791 RYAEMSA-----GEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVASM 845

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            + EG   +                 +  RG  G +V     
Sbjct: 846 PVEEGDGIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAE 887



 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +   Y +  +     +  RGG G +      R+GK ++S
Sbjct: 802 ILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVAS 844


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 399/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSAYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLAL-DKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   E + + IS   +++          +     ++
Sbjct: 483 ------RRTTIEFDADDIRDIEDIIT-NESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G   LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++   I+    +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 525 SNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPA 577
           + RG ++ +            + AL   EGD L  A H     ++++L +  G A   P 
Sbjct: 619 TKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPH 678

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             +         ++ +   N    +V+  +      +L+V  +G        +     R 
Sbjct: 679 EKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSVLIVCDQGFGKRSLVEDFRETNRG 738

Query: 638 GK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           G       +   +   +  +     D + ++    + +  ++  +  M R  +GVRL   
Sbjct: 739 GVGVRSILINERNGNVLGAIPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHL 798

Query: 693 KDGG 696
           K+G 
Sbjct: 799 KEGD 802


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/769 (34%), Positives = 416/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + ++ NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   E          + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEAYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 ISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 244/794 (30%), Positives = 395/794 (49%), Gaps = 68/794 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+S ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKEFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V  F 
Sbjct: 360 DFRIETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDILARRERIEAIIEEELTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ +   + +   
Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSSRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++ KG       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFTEDVFLVMLTHKGYIKKTALSAFSNIRTNGLIAISLGEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D + +       + F  D  Q+  + R  +GV+    K G   ++I   +
Sbjct: 652 LRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVKAMKLKKG--DELISMDV 709

Query: 706 ------------CEGLTWIDS-------------------AGRSYNRSENDLLGWLGKRG 734
                        E    +D+                       Y +        L +R 
Sbjct: 710 LPAQVTAGIADAAEDEDVLDNETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRA 769

Query: 735 GVGSLVPKGFPRSG 748
           G+G    K   ++ 
Sbjct: 770 GMGVRAIKFKSKTD 783



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 42/246 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +  +   ++   V+++++G+I+           +  L A+   EGD L+ 
Sbjct: 595 IPKDEKITSIVAVSEFTEDVFLVMLTHKGYIKKTALSAFSNIRTNGLIAISLGEGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRG---------------------HGEA 589
                  D I+L +  G A    A N      GR                        + 
Sbjct: 655 VRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVKAMKLKKGDELISMDVLPAQV 714

Query: 590 IQLLIDLNHNQDIVT-------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KT 640
              + D   ++D++             +   +L +++ G    V  S+     R G    
Sbjct: 715 TAGIADAAEDEDVLDNETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVR 774

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            +K  S+      + V    D + +V     ++  ++D I   SR   GVR+Q       
Sbjct: 775 AIKFKSKTDCLASLHVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDA 834

Query: 698 SDVICF 703
              +  
Sbjct: 835 IAAVAL 840


>gi|332673551|gb|AEE70368.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           83]
          Length = 828

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/769 (34%), Positives = 418/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDEHSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 ISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/769 (34%), Positives = 418/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++K+LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL   + ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   E          + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEAYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 IGDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/837 (30%), Positives = 398/837 (47%), Gaps = 101/837 (12%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++  TL E  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++ +E 
Sbjct: 1   MADETTLAEPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  ++KSARIVG+V+GK HPHGD ++YD+L R+AQ +  R PLI GQGNFG++D D
Sbjct: 61  GFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +VA  +L  +D+D VDF+  Y+  + EP V P+++PNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA ++N  I++E+L E +  PDFPTG +I+  R     +Y+
Sbjct: 181 VGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALIL-GRSGARSAYQ 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   VR+R  +EE+      IV+TEIPYQ  K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  +T FP NM  +  G  P+++ L  I++ +
Sbjct: 300 SNREGVRIVIDLKRDATPEVVLNQLWRHTPAQTSFPANMLAI-RGGRPELLNLRDIIQAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------- 413
           +  R +V+ RRS F +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLARE 418

Query: 414 -----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L+E QV AIL+LRL  L  L   +I  EL  L  
Sbjct: 419 WPIAEIAPYIRLVEAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLAD 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++  +L +  + +  +  E+  +++ F+       RR+   E++ A      + +IE
Sbjct: 479 SITELLEILANRVKLYEVMRGELVAIRDQFATP-----RRS---EIAAAADGIDDEDLIE 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D +       T   +L  S 
Sbjct: 531 REDMVVTVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSN 590

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y      L  G     G  +  L+ L   + I T               ++  ++K
Sbjct: 591 HGKVYRYKVWRLPEGGPATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAK 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     E+++  V  +   D V +     + + F+ D 
Sbjct: 651 GAVRRNSMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGISDVICFKICE--GLT----------------------- 710
           + E  SR   GVR  + K  G  +VI   +    G T                       
Sbjct: 711 VREFQSRTSTGVRGIALK--GEDEVISLSVLHRVGTTQEEREAYLRFAPWKGEKEGEPEL 768

Query: 711 --------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                          +      Y +  +        RGG G        R+G  ++S
Sbjct: 769 SVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGDVVAS 825



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 27/186 (14%)

Query: 518 EPITVVISNRGW-IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           E   ++ +  G  IR             S  +  +  K  D +            +  + 
Sbjct: 691 EDDVLLATRCGRAIRFAADDVREFQSRTSTGVRGIALKGEDEVISLSVL----HRVGTTQ 746

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           + +   L        +G  E    L  +   ++     + +S   +L V + G   +   
Sbjct: 747 EEREAYLR---FAPWKGEKEGEPEL-SVERYEE-----LRESEQFILTVCANGYGKLSSA 797

Query: 629 SEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
            E     R G+    + +     + +       G  + +V +  KL+  S+  +  + RG
Sbjct: 798 YEYRRTGRGGQGITNIDNIARNGDVVASFPASKGHQLMLVTDQAKLIRMSLASLRVIGRG 857

Query: 685 -KGVRL 689
             G+RL
Sbjct: 858 SAGLRL 863


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/758 (34%), Positives = 418/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM+E+GL    A+KK
Sbjct: 10  KNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+AAA RYTEA
Sbjct: 70  SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAVGMATSIP H
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + EI +A + +++NP   + ++LE+I GPDFPTGGI +  +  I+E+Y+ GRG  +VRA
Sbjct: 190 RIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGI-IYGKVGIIEAYKTGRGRVKVRA 248

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RDES  +   V+ 
Sbjct: 249 KVHVEKT-KNKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++ L+ MET F + +  +     P++  L  +L  +L HR+ ++ R
Sbjct: 308 ELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKE-PKIFTLLELLHLFLNHRKTIIIR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+G LIA  NIDEI+ +I+  + P   K  ++ RF+L+E Q  AI
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMERFTLSEIQSKAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L  LE  +IK E  NLL   ++++ +L S  +    +  E+ EVKE FS    
Sbjct: 427 LEMRLQRLTGLERDKIKEEYQNLLELIDELNGILKSEDRLNEVVKTELLEVKEQFSSP-- 484

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              RRT   E+  + +    + +I  EP+ V +S +G+++ +   + +      K     
Sbjct: 485 ---RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSG 538

Query: 547 ---EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              EGD ++    A+T D +L ++  G+ Y L    +        G+AI  LI L  ++ 
Sbjct: 539 STYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVK 655
           I+       +     L   +  G       SE  +N    G   + +   +++    +V 
Sbjct: 599 IMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEYDELVSAKIVD 658

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               H+ +   +   + F ++ + E+ R  +GVR     +            +    +  
Sbjct: 659 KNSKHLLIASHSGTFIKFPLEDVREIGRSARGVRGIRLNENDFVIGAVVISDDHNKLLSV 718

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +  K   ++G  + 
Sbjct: 719 SENGLGKQTLAESYREQARGGKGVIGMKLNKKTGNLVG 756



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----SALHFKEGDSLKIALHA 557
                 ATL       E      +  G ++             S +     D     + A
Sbjct: 595 PDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEYDELVSA 654

Query: 558 HTTD----RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
              D     +L+ S  G     P  ++         ++ +    ++  I    + D   K
Sbjct: 655 KIVDKNSKHLLIASHSGTFIKFPLEDVREIGRSARGVRGIRLNENDFVIGAVVISDDHNK 714

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENR 668
           LL VS  G              R GK  + +   +K   +  ++ V  +   + ++  + 
Sbjct: 715 LLSVSENGLGKQTLAESYREQARGGKGVIGMKLNKKTGNLVGIISVDDENLDLMILTASA 774

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           K++  SI  I E  R   GV+L    D  +
Sbjct: 775 KMIRVSIKDIRETGRNASGVKLIDAADKVV 804


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/755 (32%), Positives = 392/755 (51%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V L   +E  YL YA+S I  RA+PD RDG KPV RRII++M E G+     ++KS
Sbjct: 6   KVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+G+ HPHGD +VY++LVR+AQ F  RYPLI G GNFG+IDGD  AA RYTE R
Sbjct: 66  AHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +A  ++  +++D VDF   Y+    EPVV P+K P LL NG+SGIAVGMAT+IP HN
Sbjct: 126 LSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L LI+ P   IE+LL +I GPDFPTG  I+   + I ESY  G+G   VR +
Sbjct: 186 LGELIDALLYLIEKPTAEIEELLNFIKGPDFPTG-GIIIGTKGIRESYLTGKGKLTVRGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE  +G   I++ EIPY V KS L+ +IAEL+  K+I  ++D+RDES      V+  
Sbjct: 245 LVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVVIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  DP +++  ++  + ++T F + M  +  G+ P++  L  +L  +L HR++V+ RR
Sbjct: 305 LKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQ-PKIFNLKELLTIFLEHRKDVVIRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++    R  IL+GLLIA  ++DE+I+IIR   N +K K  ++ RF LT+NQ  AIL
Sbjct: 364 TKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLRFKLTQNQAQAIL 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L +LE+ ++  E+  +      ++ +L   K+ W  I+ E++E+K+ ++     
Sbjct: 424 DMRLHQLTRLEKERLMEEMKQIKENISILERILKDEKELWRVISEELKEIKKKYADE--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------ 546
              R T  E          + ++   P  + I+  G+I+ L   +  L     K      
Sbjct: 481 ---RKTSIEEEEK-SDITIEDILPDNPEVICITQDGYIKRLPLSTYQLQRRGGKGLNTLA 536

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
               D +   +   T   + L S  GK Y++    L   S +  G AI+  +++ + + I
Sbjct: 537 NNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETSRQSKGIAIKEYLNIENEERI 596

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                            ++SKG        E     + G   +K+   + +  V   +G 
Sbjct: 597 TEIISLSELPKNLYFFFITSKGIVKKTPVEEFENVRKSGIYAIKIGEGDFLVNVFLTSGN 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + + +       + F       M R  +GV     +    S +    + E    +     
Sbjct: 657 NEIIIFTRKGNAIRFHEKDTRPMGRVAQGVIGIKLRKDD-SVIGGVILQESKQIVLVTKY 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  N       KRGG+G    K   ++G  + 
Sbjct: 716 GIGKRVNPQEFSTQKRGGIGIRAIKITSKTGDLIG 750



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 150/448 (33%), Gaps = 41/448 (9%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            A  +  L    D   E + I+   +N     + LM   F L+  + +  L+M +  + R
Sbjct: 374 RAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR-FKLTQNQAQAILDMRLHQLTR 432

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
           + +    + +++E    +  +       + +    RV   +   I     DE    I  E
Sbjct: 433 LEK----ERLMEEMKQIKENISILERILKDEKELWRVISEELKEIKKKYADERKTSIEEE 488

Query: 411 DKPKP-----VMVSRFSLTENQVDAILNLRL--RSLRKLEEYQIKSELDNLLAEKEKI-- 461
           +K        +  +   +   Q   I  L L    L++     + +  +N          
Sbjct: 489 EKSDITIEDILPDNPEVICITQDGYIKRLPLSTYQLQRRGGKGLNTLANNNDDVITSFVV 548

Query: 462 ------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
                   L ++  + ++    E+ E       S  +  +     E        +  + +
Sbjct: 549 TSTRSTLFLFSNKGKVYSIKTYELDETSRQ---SKGIAIKEYLNIENEERITEIISLSEL 605

Query: 516 EKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            K      I+++G ++              + A+   EGD L         + I++ +  
Sbjct: 606 PKNLYFFFITSKGIVKKTPVEEFENVRKSGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRK 665

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           G A      +    R  G   Q +I   L  +  ++   +   + ++++V+  G    V 
Sbjct: 666 GNAIRFHEKD---TRPMGRVAQGVIGIKLRKDDSVIGGVILQESKQIVLVTKYGIGKRVN 722

Query: 628 ESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             E     R G       +   + + + +      D + +  +  +++   ++ IP +SR
Sbjct: 723 PQEFSTQKRGGIGIRAIKITSKTGDLIGVKNVSENDEILISTKKGQIIRIPVNNIPILSR 782

Query: 684 -GKGVRLQSYKDGGISDVICFKICEGLT 710
             +GV+L    +     V+   + E  T
Sbjct: 783 NSQGVKLVKLNED--DSVVSMDLVENET 808


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 239/836 (28%), Positives = 409/836 (48%), Gaps = 108/836 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ +++KK
Sbjct: 11  KETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSSYKK 70

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYTE 
Sbjct: 71  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAMRYTEI 130

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  ++ED V+F   Y+  + EP+V P++FP+LL NG++GIAVGMAT+IP H
Sbjct: 131 RMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMATNIPPH 190

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A L L+ +P+ SI+ L++ I  PDFPTG   +     + E YR GRG   +R 
Sbjct: 191 NLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGA-TIYGLAGVREGYRTGRGRVVMRG 249

Query: 255 RWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  + D+RDES +    V
Sbjct: 250 KTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRV 309

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L  IL E+L HRREV+
Sbjct: 310 VIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVV 368

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------- 410
            RR+ FR++       I +G  +A  NID +I +I+                        
Sbjct: 369 TRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGLVGD 428

Query: 411 ---------DKPKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                    +  +P  +          + L++ Q DAIL + LR+L  L++  I ++   
Sbjct: 429 MLSRTDLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILADYKT 488

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           ++A+      +L   ++    I  E+ E+K  F        RR+   E++        + 
Sbjct: 489 IMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDP-----RRS---EINPFGGDIADED 540

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I    + V +++ G+I++         +       A   K+ D ++    A+T D ++ 
Sbjct: 541 LIPPREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMC 600

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            +  G+ + +    L  G     G  I  +I L+ N+ +        +     +   ++ 
Sbjct: 601 FTNHGRCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFPEDEYVFFATAM 660

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI---- 675
           G    V+ S     ++ G   + +   + +  V + +G + + +     K + F+     
Sbjct: 661 GVVKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIRFNEYWER 720

Query: 676 ------------DQI------------PEMSRGKGVR----------LQSYKD-GGISDV 700
                        +I            P   +  GVR               + G I  +
Sbjct: 721 SSDDEETGDDNDTEISGSQEDDNAESAPISGK-HGVRPSGRGSGGLRGMRLPENGRIVSL 779

Query: 701 ICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I F        L  + +    Y +           +GG G++      R+G  +++
Sbjct: 780 ITFAPECEQSELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGERNGDLVAA 835



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 51/249 (20%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSL 551
              + +    A L      ++      +  G ++ +          V + A+  KEGDSL
Sbjct: 631 IQLDENEKVSAILPVRDFPEDEYVFFATAMGVVKKVQLSAFKNVSKVGIKAIALKEGDSL 690

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAG----------------NLLSGRGHGEAIQLLID 595
                    + I+L S  GKA                       +   +    A    I 
Sbjct: 691 VGVARTSGRNDIMLFSNLGKAIRFNEYWERSSDDEETGDDNDTEISGSQEDDNAESAPIS 750

Query: 596 -------------------LNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEI 631
                              L  N  IV+   +   C     ++L  ++ G       +  
Sbjct: 751 GKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAPECEQSELQVLTATANGYGKRTPIASY 810

Query: 632 IANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
               + G+  + +++ E+    +   +    D + ++     L+   ++QI E  R   G
Sbjct: 811 SRKNKGGQGNIAINTGERNGDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAG 870

Query: 687 VRLQSYKDG 695
           V+L +  +G
Sbjct: 871 VKLINLDEG 879


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 261/768 (33%), Positives = 417/768 (54%), Gaps = 35/768 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS             E+    +    + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFS--------SQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             LI L  ++ I+       +     L   + KG       SE  +N   G   + +   
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFDSN-YNGMRAIVLDEG 646

Query: 648 EKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +++    +V     H+ +       + FS++ + E+ R  +GVR     +          
Sbjct: 647 DELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREIGRTTRGVRGIRLNENDFVVGAVVI 706

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 707 SDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 754


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 254/735 (34%), Positives = 390/735 (53%), Gaps = 60/735 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKVRV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK +F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKALFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + F    +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFKI 705
              +G    V+   +
Sbjct: 720 RLAEG--DRVVSMSV 732


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 248/738 (33%), Positives = 388/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  NIDE++A IR+                             
Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALID 442

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S +
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ EVK+ F+       RRT   E+         + +I +E + V +++ G+
Sbjct: 503 RIMGIISDELAEVKDQFAVP-----RRT---EIVDWSGDMDDEDLIAREDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     +S +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +          +    D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R       G  +V+   I
Sbjct: 735 RGIKL--NGDDEVVSMSI 750



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 65/255 (25%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDS----LKIALHAHTTDRILLLSTDG 570
            V  ++ G +R  K             A+ F E D     L  A  A   D ++L++  G
Sbjct: 655 VVFATSAGTVRRNKLSDFTNVMRNGKIAMKF-EDDHADTTLINARIASNDDDVMLVTNSG 713

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----------------------- 607
           +A   PA ++             I LN + ++V+  +                       
Sbjct: 714 RAIRFPATDVRVFNSRASVGVRGIKLNGDDEVVSMSIIRHFDASSEERTAYLKMRRAMAG 773

Query: 608 -----------------YDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF 641
                            +              LL ++ KG   +    +     R G   
Sbjct: 774 LADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGV 833

Query: 642 LKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
             +       + +        D + +     + +   ++ I   SR   GV++     G 
Sbjct: 834 TAMDKAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGE 893

Query: 697 ISDVICFKICEGLTW 711
           +   + +   +G   
Sbjct: 894 VVVSVAWIADQGDET 908


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 238/770 (30%), Positives = 412/770 (53%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGI +   E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGI-IYGYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+ +G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA     +++
Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L  G  PQ++ L  ++  ++ HR +V++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKG-RPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +      D   + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  + +   + MI  + + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y S   L++ + KG        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              +G   + +  ++ + + F+ D++  + R  +GVR      ++  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFAEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ + +G ++        +     ++A+  KEGD L  A     + +++L    G+A   
Sbjct: 615 IMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRF 674

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFI-------V 626
               + +   + + ++ +     N ++V     ++     +LVVS  G            
Sbjct: 675 AEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREETVLVVSENGYGKRSYIDDPET 734

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMS 682
            E+      R GK    +S  EK   +V +     G+ + ++ ++   +  SID +  + 
Sbjct: 735 HEAVYRITNRGGKGVKTISITEKTGQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILG 794

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GV+L + K       +   + E 
Sbjct: 795 RATQGVKLINIKGKDSIAAVTKVMKED 821


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/757 (32%), Positives = 381/757 (50%), Gaps = 61/757 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ ++ +S+   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM+E G      + 
Sbjct: 24  QDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPDKPYS 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+VIGK HPHGD +VYD+LVR+AQPF    PL+ GQGNFG+ID D  AA RYTE
Sbjct: 84  KSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAMRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +RMT+V   +L  +D+D VDF+D Y+ ++ EPVV P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 144 SRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMATNIPP 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A LA+I++P I+ E L E + GPDFPTG +I+  +    ++   GRG   +R
Sbjct: 204 HNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGALIM-GQSGSRKALMTGRGSVIMR 262

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE   G   I+V+EIPYQV K+ +I KIAEL+  K+I  + D+RDES  +   V+
Sbjct: 263 SKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNGIRVV 322

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    D+++  ++  S +++ F +NM  L+ G  P++M L  +L+ ++  R EV+ 
Sbjct: 323 IELKRDASADVVLNQLYRFSQLQSSFAVNMLALN-GGRPELMNLRKVLEYFITFREEVIV 381

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           RR+   +     R  +L GL +A  NIDE+I +IR    P                    
Sbjct: 382 RRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQDMGPL 441

Query: 419 ---------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                              L++ Q  +ILNL L  L  L   +I +E   L  +  +   
Sbjct: 442 IDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIAEYLE 501

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  +    I  E+ EVKE F+       RR+ F +          + +IE E + V 
Sbjct: 502 ILRSRPRILGIIKAELAEVKEKFAVP-----RRSQFVD---GGVDMEDEDLIEVEDMVVT 553

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +++ G+++                 S +  K+ D +     A T   IL  S+ G  Y  
Sbjct: 554 VTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGMVYKE 613

Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVE 627
               L  G     G+A+  +  L  ++ I +      +        ++  +  GN     
Sbjct: 614 KVWRLPIGGPTSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDVMFATRSGNVRRNR 673

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-G 684
            ++     R GK  +K+   + +  V   +  D V +     + + F++  +     R  
Sbjct: 674 LADFTRVNRAGKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFAGRDS 733

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
            GVR      G    VI   I   +       R+Y +
Sbjct: 734 TGVRGIRL--GAEDTVISMGILRHMGVTSEEARAYLK 768



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 22/127 (17%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKV--------TGD 659
           +   +  V+  G        +     R GK  +   +   +K    VK          GD
Sbjct: 808 AEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPVGDGD 867

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            V +V +  +L+   +DQI    R  G   V     + G    V+          +D   
Sbjct: 868 EVMLVTDGGQLIRTPVDQIRIAGRSTGGVWV----LRTGDGERVVS-----AARLVDDGE 918

Query: 717 RSYNRSE 723
              +++E
Sbjct: 919 GGMDKAE 925


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/769 (34%), Positives = 418/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   E          + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEAYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L+ ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLDPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++     V  D  H+ +       + FS++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREIGRTTRGVIGIKLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 INDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 756


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/769 (34%), Positives = 416/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VR +  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRTKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+  I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDE 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GVR     +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSARGVRGIKLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 INDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/768 (34%), Positives = 420/768 (54%), Gaps = 35/768 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   EV         + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEVYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             LI L+ ++ I+       +     L   + KG       SE  +N   G   + +   
Sbjct: 588 VNLISLDPDEKIMATLSTKDFSDERSLAFFTKKGVVKRTNLSEFDSN-YNGMRAIVLDEG 646

Query: 648 EKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +++    +V     H+ +       + FS++ + E+ R  +GV      +          
Sbjct: 647 DELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREIGRSTRGVIGIKLNENDFVVGAVVI 706

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +    +  +     +           RGG G +  K   ++G  +S
Sbjct: 707 NDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVS 754


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/734 (34%), Positives = 397/734 (54%), Gaps = 60/734 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALID+P+++ E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +RA+   E
Sbjct: 206 VDATLALIDDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRTE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  S M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYD 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 384 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLIDD 443

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++LTE Q  AIL+LRL+ L ++   ++  EL+ L A+ ++   +L+S ++
Sbjct: 444 PLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             + I  E+R V+E F+       RRT   E+         + +IE+E + V +++ G+I
Sbjct: 504 IMSIIGDELRSVREQFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 556 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
            S  G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 616 SSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQS 691
            R GK  +K+  + ++      + D  V +V  + + + F    +    SR   GVR   
Sbjct: 676 RRNGKIAMKLPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIK 735

Query: 692 YKDGGISDVICFKI 705
             +G    V+   +
Sbjct: 736 LTNG--DHVVSMSV 747



 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +       ++V +F  D   ++++ +SKG +  V    I   +R 
Sbjct: 817 HDYPVRGRGGMGVAAMDRAMRGGELVASFPVDLDDQIMLATSKGQSIRVPVDGISFRSRS 876

Query: 638 --GKTFLKVSSEEKMKLVVKVTGD 659
             G         E++  V  +   
Sbjct: 877 AGGVKVFNTGKGEEVVSVAWIADQ 900


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 252/750 (33%), Positives = 429/750 (57%), Gaps = 25/750 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++   ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KK+
Sbjct: 7   DIETQPIKDFTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKKA 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTEA
Sbjct: 67  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPDDPKSFAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++   + L+L  + +  VD++  ++   +EPVV P++ PN+L NGT+GIAVGMAT IP H
Sbjct: 127 KLRPYSRLMLHELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +AL+DN  +S+E+L+ YI  PD+PT   +V  +  I + Y  G G  R+RA
Sbjct: 187 NLREVASACIALLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
           ++ VEE       +V+T +P+Q   ++++E+IA+ +  K++P+++D+RDES  +  +R V
Sbjct: 247 KYTVEEGD-----VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRFV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++  ++ D LM  +F  +D+E  + +NMNV+ +   P+V  L  IL EWL  R + +
Sbjct: 302 ISPRSNRVNIDELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQTV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RR  +R+  +++R+ IL+GLL+AYLN+DE+I IIR ED+PK V++  F L++ Q +AIL
Sbjct: 362 TRRLQWRLDKVEKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAVLMKAFKLSDEQAEAIL 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
             +LR L KLEE +I+ E ++L  E++ +   L S ++    I  E++      + + D 
Sbjct: 422 ETKLRHLAKLEEMKIRGEQEDLERERDDLQKTLGSKQRLKTLIKKELK------ADAQDY 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G  R +      A +   + A++  EP T+VIS +GW+R+ K H +    L++K GD  +
Sbjct: 476 GDDRRSPLVEREAAQQMDETALVPSEPTTIVISEKGWVRAGKGHDLKPEELNYKAGDGYQ 535

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                 T  + + + ++G+ YTL A +  S R  GE +   + +    + V         
Sbjct: 536 HHALGRTNQQAVFIDSNGRTYTLVAHSFPSARSFGEPLTGKLKVKDGAEFVGVMAGKPQD 595

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRK 669
             L+ +  G  ++ +  +++   + GK  L V    K+   V V     D +  V E   
Sbjct: 596 LYLLATDAGYGYVAKLEDMMTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGY 655

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRS 722
             +  +D++P++ +GKGV++          ++  ++ V   +  E  T      +     
Sbjct: 656 CGVIKLDELPQLPKGKGVKMLGIPPAKFKTREEFLAYVTLVQDGEAFTVFC-GKKHKTLK 714

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++   +  +RG  G  +P+G+       +
Sbjct: 715 SSEQDDYTIERGKRGVKLPRGYQNVDALSA 744


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 267/835 (31%), Positives = 410/835 (49%), Gaps = 114/835 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 16  VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EYI GPDFPTG +++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALML-GRSGARKAYLEGRGSVIIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++  
Sbjct: 315 ATPEVVLNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAHL 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------- 417
           ++    R  IL GL +A  NIDEI+  IR                               
Sbjct: 374 LRKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDD 433

Query: 418 -------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + +    +L+S ++
Sbjct: 434 PTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   E+         + +IE+E + V +++ GWI
Sbjct: 494 IMGIISDELREVRDNFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGWI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
               G G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 SGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +  +KLV   +    D V +   + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSYKDGGISDVICFKI-------------------------------------------- 705
                 G   V+   +                                            
Sbjct: 726 IRLT--GEDSVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDDAEASDEDAPEDPNFSTE 783

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   E L    +AG S   S +      G RGG+G        R G+ ++S
Sbjct: 784 LYAEMSAAENLILTITAGGSGKLSSSHDYPVRG-RGGMGVTAMDKAMRGGEIVAS 837



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   +L +++ G+  +    +     R G     +       ++     V   D + +  
Sbjct: 791 AENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGEIVASFPVELDDQIMLAT 850

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
              + +   +D I   SR   GVR+  +  G   +V+   
Sbjct: 851 SKGQSIRVPVDGISFRSRSAGGVRV--FNTGKGEEVVSVA 888



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +       +IV +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 810 HDYPVRGRGGMGVTAMDKAMRGGEIVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRS 869

Query: 638 --GKTFLKVSSEEKMKLVV 654
             G         E++  V 
Sbjct: 870 AGGVRVFNTGKGEEVVSVA 888


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/766 (37%), Positives = 428/766 (55%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++   L +     +  +A++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +++L+L  +D   VDF+  Y+    EP + PS+ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN+ E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I 
Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
           + Y  GRG  +VRA W +E++ RG W  VVTE+P+     +++E+I EL           
Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300

Query: 290 -------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                  +    + +L+ +RDES  D  VR+V  PK+++ D       +   + +ET   
Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+  R   + RRS F++Q +D R+ IL+G     LNI
Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L+E Q D IL +RLR L +LE  +I+ EL  L  EK  
Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRNEKTT 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI       +     G  R T  EV+        +  +  EP+
Sbjct: 481 LQDLLDNPSSMKRLVIKEIE------ADEKQFGDARRTLIEVAEKASV---ETKVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS +GW+R+   H  D +   FK GD+L       T D +L+  ++G+ Y++P   L
Sbjct: 532 TVVISQKGWVRARTGHGHDAAQFTFKAGDTLYNTFECRTVDSLLVFGSNGRIYSVPVSAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G  I  L++L     I+  F   +   LL+ S+ G  F  +  ++++ TR GK+
Sbjct: 592 PGARGDGVPITTLVELASGSRILHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKS 651

Query: 641 FLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ +   ++      VT     +A + E  +LL+F ID+I  + + G+GV L    +   
Sbjct: 652 FITLDDGDEPLAPCPVTAGASAIACLSEKGRLLVFGIDEIKSLTAGGRGVILMDL-EKNE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
             +    I +    +  AGR         S + L   +GKR   G 
Sbjct: 711 KLLAAQAISQRGVIVSGAGRGGKAQEVLLSASGLAPHIGKRARKGK 756


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 250/833 (30%), Positives = 401/833 (48%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + ++ ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVEAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + +     +  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLVK 425

Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + S TE Q  A+L +RL+ L  +E+ +++ +L  L  E  +  ++L S
Sbjct: 426 LVDDKAMLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++    +  E+ +VKE F+        R T  E    DK    + +I++E + V ++  
Sbjct: 486 RERLLKILKEELIKVKEEFATP------RLTSIEFGEFDKDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  GK Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                  G   VI   + +G++                                      
Sbjct: 718 GMKL--AGDDSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLD 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 79/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L  +  +++  V                                        
Sbjct: 713 SDGVRGMKLAGDDSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TLDSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  N KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAD 884


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 246/836 (29%), Positives = 397/836 (47%), Gaps = 119/836 (14%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +  
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRG 240

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +
Sbjct: 241 DREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAE 300

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++  
Sbjct: 301 VILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKA 359

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------------ 419
             R  +L GL IA  NIDE+I +IR    P+                             
Sbjct: 360 RERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHR 419

Query: 420 -----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    
Sbjct: 420 INEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+  V++ F        RRT   E+         + +I +E + V +S+ G+I+   
Sbjct: 480 VKDELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVP 531

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
                  +      S +  ++ D +      +T   +L  S+ G  Y      L  G   
Sbjct: 532 LTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G+A+  ++ L   + I T               ++  +++G     + S+ +   R G
Sbjct: 592 SRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNG 651

Query: 639 KTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           K  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +
Sbjct: 652 KIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGE 711

Query: 695 GGISDVICFKI----------------------------CEGLTWI-------------- 712
           G    +I   I                             E +  +              
Sbjct: 712 G--DRIISMTIVGHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDER 769

Query: 713 ------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                         + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 770 YEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGELVAA 824



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 75/280 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + +             +  + RG +R  K             A
Sbjct: 602 PLEPGERITTILPLPEDEASWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 654

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L     
Sbjct: 655 MKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDR 714

Query: 602 IVT-----------------------------------AFVYDS---------------- 610
           I++                                   A V +                 
Sbjct: 715 IISMTIVGHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELK 774

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 775 AREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIM 834

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
           +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 835 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 874


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 275/757 (36%), Positives = 446/757 (58%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   L  + ++ + L    EE YL Y++  I +RA+P + DG KPV RRII AMSE+G
Sbjct: 1   MSDKQNLSLQGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  
Sbjct: 61  LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++ +EL+L  + +   D++  ++    EP + P++ P++L NG +GIA
Sbjct: 121 SFAAMRYTESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+ EA L +ID+P+ ++  +LE++ GPD+PT   I+  R  I   Y 
Sbjct: 181 VGMATDVPPHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYT 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F+ RA + +EE       IV++ +P++V   ++++ IA+ +I K++P++ D+RDE
Sbjct: 241 SGRGSFKSRAVYHMEEGD-----IVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P+++ +D + LM  +F  +D+E    +N+N++ + + PQV  L  IL 
Sbjct: 296 SDRNHPTRLVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGLLKILN 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R+  + RR  FR+  I+ R+ +L+GLLIAYLNIDE+I IIRN D  K  +++RF 
Sbjct: 356 EWLVYRKRTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDDSKAELITRFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  AIL ++LR L KLEE QI+SE+ +L  EK+K+  LLNS ++    +  EI+  
Sbjct: 416 LSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLLLLLNSERRFNTLLKKEIKAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +  +     RR+   E     KA  ++ ++  E I+V++S +GWIRS K H VD  A
Sbjct: 476 ALNYGDA-----RRSPLVERLE-AKALTEKELLPNEQISVILSRQGWIRSAKGHDVDAQA 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GD   I+    +    + +   G+AY+L A +L S R  GE +    + N     
Sbjct: 530 LNYKTGDEFLISAQGCSNQSAIFIDASGRAYSLDAHSLPSARSQGEPLTGRFNQNEQCAF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DH 660
           V+  + D   + ++ S  G  FI + S+I +  + GK  + +S    +  V K++   D 
Sbjct: 590 VSVLLGDDNDQYIISSDHGYGFIAKFSDINSRNKNGKALINLSENAYLLPVQKLSNNADD 649

Query: 661 VAV-VGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFK---ICEGLTWID 713
           + + +    ++LIF ++ +P +SRGKG ++ +    K     + +        EG   + 
Sbjct: 650 LCLTISNEGRMLIFPVNSLPNLSRGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTLH 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  R      +DL+ + G+RG  G  +P+G  R    
Sbjct: 710 AGKRKLTLKASDLVAYQGERGRRGGKLPRGLQRVDNI 746


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 261/738 (35%), Positives = 439/738 (59%), Gaps = 25/738 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR V
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE+++++
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP HN+ E
Sbjct: 121 MAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++RA W  
Sbjct: 181 LAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWKK 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RIVL P+
Sbjct: 241 ED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  + RR 
Sbjct: 296 SNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AILNLRL
Sbjct: 356 NYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+        R
Sbjct: 416 RHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP------R 469

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +        KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD      +
Sbjct: 470 HSPLVERAEAKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGYLAHAY 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S  K+L+
Sbjct: 530 GRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSDTKVLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIF 673
            S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    ++L+F
Sbjct: 590 ASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVF 649

Query: 674 SIDQIPEMSRGKGVRLQSY-----KDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            I ++P++S+GKG ++ +      K+G   ++ ++  K  + L ++ S  R      +D+
Sbjct: 650 PITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITLKPSDI 708

Query: 727 LGWLGKRGGVGSLVPKGF 744
             + G+R   GS + +G 
Sbjct: 709 DNYRGERARKGSQLVRGL 726


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 247/833 (29%), Positives = 399/833 (47%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVK 425

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 TKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEVFNPEELGVSLTAP 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 78/289 (26%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFTKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L     +++  V                                        
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEVFNPEELGVSL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/835 (31%), Positives = 412/835 (49%), Gaps = 114/835 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 42  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 101

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 102 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 161

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 162 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 221

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 222 VDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 280

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 340

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 341 ATAEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAYN 399

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 400 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLIDD 459

Query: 419 --------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L +L   ++  EL+ L A+ ++   +L+S ++
Sbjct: 460 PTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRER 519

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+ EV+  F+       RRT   E+         + +IE+E + V +++ G+I
Sbjct: 520 IMGIIADELTEVRNSFAVP-----RRT---EIVDWSGDMDDEDLIEREDMVVTVTSGGYI 571

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 572 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 631

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     I      D      +  +++  +S G       S+    
Sbjct: 632 GGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTNV 691

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
            R GK  +K   + +    +   +    D + +V    + + F   ++    SR   GVR
Sbjct: 692 MRNGKIAMKFEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVR 751

Query: 689 LQSYKDGGISDVICFKI------------------------------------------- 705
                DG   +V+   +                                           
Sbjct: 752 GIKLGDG--DEVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDEDASDEDAVEDPNFSTE 809

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   E L    +AG S   S +      G RGG+G        R G  ++S
Sbjct: 810 LFAEMSAAENLILTITAGGSGKLSSSHDYPVRG-RGGMGVTAMDKAMRGGALVAS 863



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RGHGEAIQLL 593
            +SV +  +   +GD +          +    + + +   L     ++G      + +  
Sbjct: 745 RNSVGVRGIKLGDGDEVVSMSVIR-HSKY---TPEQRTAYLKMRRAMAGLTDEDASDEDA 800

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           ++  +    + A +  +   +L +++ G+  +    +     R G     +        +
Sbjct: 801 VEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGAL 860

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
                V   D + +     + +   +D I   SR   GVR+  +  G   +V+   
Sbjct: 861 VASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRI--FNTGKGEEVVSVA 914



 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +        +V +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 836 HDYPVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRS 895

Query: 638 --GKTFLKVSSEEKMKLV--VKVTGDH 660
             G         E++  V  +   GD 
Sbjct: 896 AGGVRIFNTGKGEEVVSVAWIADNGDD 922


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/736 (34%), Positives = 395/736 (53%), Gaps = 61/736 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  S M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALN-GGRPEQLTLRRFLTSFLDFREDVIARRTAYD 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 374 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDD 433

Query: 419 --------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 434 PTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   E+         + +IE+E + V I++ G+I
Sbjct: 494 ILGIISDELREVRDNFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTITSGGYI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 GGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +  +KLV   +    D V +V  + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSYKDGGISDVICFKI 705
                 G  +V+   +
Sbjct: 726 IRLVSEG-DEVVSMSV 740



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +     +        D + +   
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKGGAIVATFPVELEDQIMLATS 846

Query: 667 NRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDV--ICFKICEGLTWIDSAG 716
             + +   ++ I   SR   GVR   + K   +  V  I  +  E      S G
Sbjct: 847 KGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAERDDEDAEVPTSEG 900


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 237/770 (30%), Positives = 412/770 (53%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP+V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGI +   E + E+++ GRG   +RA
Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGI-IYGYEGVKEAFKTGRGRVIIRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +E+ +G  CIVVTE+PYQV  S L++K ++L+   R+  + D+RDESA     +++
Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L  G  PQ++ L  ++  ++ HR +V++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKG-RPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +      D   + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K+   Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  + +   + MI  + + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAIQNLINIESDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y S   L++ + KG        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              +G   + +  ++ + + F+ +++  + R  +GVR      ++  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFAEEKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 20/207 (9%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ + +G ++        +     ++A+  KEGD L  A     + +++L    G+A   
Sbjct: 615 IMATKKGIVKKTLLKEYSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRF 674

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFI-------V 626
               + +   + + ++ +     N ++V     ++     +LVVS  G            
Sbjct: 675 AEEKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREETVLVVSENGYGKRSYIDDPET 734

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMS 682
            E+      R GK    +S  EK   +V +     G+ + ++ ++   +  SID +  + 
Sbjct: 735 HEAVYRITNRGGKGVKTISITEKTGQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILG 794

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GV+L + K       +   + E 
Sbjct: 795 RATQGVKLINIKGKDSIAAVTKVMKED 821


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/736 (34%), Positives = 395/736 (53%), Gaps = 61/736 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KSAR V
Sbjct: 16  VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  S M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALN-GGRPEQLTLRRFLTSFLDFREDVIARRTAYD 373

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 374 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDD 433

Query: 419 --------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 434 PTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 493

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REV++ F+       RRT   E+         + +IE+E + V I++ G+I
Sbjct: 494 ILGIISDELREVRDNFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTITSGGYI 545

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 546 KRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 605

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     I      D         +++  +S G+      S+    
Sbjct: 606 GGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTNV 665

Query: 635 TRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRL 689
            R GK  +K+  +  +KLV   +    D V +V  + + + F    +    SR   GVR 
Sbjct: 666 RRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRG 725

Query: 690 QSYKDGGISDVICFKI 705
                 G  +V+   +
Sbjct: 726 IRLVSEG-DEVVSMSV 740



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +     +        D + +   
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMKGGAIVATFPVELEDQIMLATS 846

Query: 667 NRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDV--ICFKICEGLTWIDSAG 716
             + +   ++ I   SR   GVR   + K   +  V  I  +  E      S G
Sbjct: 847 KGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAERDDEDAEVPTSEG 900


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 275/753 (36%), Positives = 425/753 (56%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +        + + LR   E  YL Y++  + +RA+P L DG KPV RRII++MSE+G
Sbjct: 1   MTETIRPAFHGFEQIPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +  VD+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+D+P+ ++  L E++ GPD+PT   I+ S   +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLRAMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA W  E         VVT +PYQV  S++IE+IA  +  K++P LEDIRDE
Sbjct: 241 NGTGSVRARATWQKENGN-----FVVTALPYQVSPSKVIEQIAAQMRTKKLPWLEDIRDE 295

Query: 305 SAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F  +D+E  + +N+NV+ +   P V  L  +L 
Sbjct: 296 SDHANPVRVVLVPRSNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNLRTLLD 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R + ++RR+ +L+GLL+A+LN+DE+I IIR ED+P+P +++RF 
Sbjct: 356 EWLTFRTDTVVRRLKHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q D IL  RLR L +LEE +I+ E D L  E E+I + L+S  +    +  E+   
Sbjct: 416 LTGEQADYILETRLRQLARLEEMKIRGEQDELARELERIVATLDSKARLKKLVKDELLAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +   +  A  A  +  ++  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVLREAAHAIDETELVPSEPVTVVLSQKGWVRAAKGHDVDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L ++EGD+L  A+ A +T ++  L + G++Y+ PA +L S RG+GE +            
Sbjct: 530 LSYREGDALLGAVRARSTWQVAFLDSHGRSYSTPAHSLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           +     ++  + ++ SS G  F+     +    + GK  + +++   +     V     D
Sbjct: 590 LALASGENDTRFVLASSHGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTW-IDSA 715
            +  V     LL     ++PE+ +GKG +L      K G    V    +       + S 
Sbjct: 650 RIVAVTSAGHLLAIPAAELPELDKGKGNKLIDIPRAKLGTERVVAVAAVGPAQKLQVYSG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R+   S  DL  +LG R   G L+P+G+ +  
Sbjct: 710 QRTMTLSFKDLDTYLGARATRGGLLPRGWQKVD 742


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/755 (32%), Positives = 404/755 (53%), Gaps = 31/755 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK + +  +L+  YL Y++S I  RA+PD RDG KPVHRRI++AM E+GL     +KKSA
Sbjct: 24  VKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VY++LVR+AQ F  R PL+ GQGNFG+IDGD+AAA RYTEARM
Sbjct: 84  RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEARM 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
              +E +L+ +D+D VDF D Y+    EP V PS+ PNLL NG+SGIAVGMATSIP H +
Sbjct: 144 ATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHRL 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI EA + +++NP+ S+  +L+ + GPDFPTGGI +  ++ I+E+Y  GRG  RVRA+ 
Sbjct: 204 DEIIEALIFVLENPQASLSDILDLVPGPDFPTGGI-IHGKQGILEAYSSGRGRIRVRAKT 262

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   I++ E+PYQ  K++L+E+I+EL   K +  + ++RDES  +   V+   
Sbjct: 263 RLERI-EGRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDL 321

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +  +++  ++  S ME+ F + +  +     P++  L  +LK +L HR+ ++ RR+
Sbjct: 322 KREANAQIVLNQLYKSSGMESTFSIILLAIHNKE-PRIFNLLELLKLFLMHRKTIVIRRT 380

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            + ++    R+ IL+GLL+A  N + +I +I+        +  ++    L++ Q  AIL 
Sbjct: 381 IYELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQAHQLSQEQSKAILE 440

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE+ +I  E   L A  +++ ++L    +  + I  E+ E+KE FS +    
Sbjct: 441 MRLQRLTGLEQEKISKEHAELQAIIQELQAILEHADKLNHLIKEELLEIKEKFSTA---- 496

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHF 545
             R T  E     +A   + +I +E + V +S+RG+ +          K       + + 
Sbjct: 497 --RKTQIE--EDYEALSDEDLIAREDMVVTLSHRGYAKRMPLKIYEQQKRGGKGKISGNT 552

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            E D ++    A+T D IL ++  G+ Y L    +        G+A+  LID+   + I 
Sbjct: 553 HEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIGKALVNLIDIEPGEKIC 612

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TG 658
                  +     L+  + KG     + S      R G   +++   + +     +    
Sbjct: 613 AILSTPDFSPDKFLVFFTKKGMIKRTQLSAF-GRVRIGVRSIELKEGDALVTAQILEHEN 671

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +       + F    + +M R   GV     K+G         + +    +  + +
Sbjct: 672 QELFMATAKGMCIRFKASGVRDMGRTAMGVIGMRLKEGDFVIGASIALSDQHKLLTISSK 731

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +        L  RGG+G +  K  P++G  ++
Sbjct: 732 GMGKQTLIGAYRLQNRGGLGVIGAKLTPKTGNLVA 766



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-----LSALHFKEGDS-LKI 553
            E      A L       +   V  + +G I+  +  +       + ++  KEGD+ +  
Sbjct: 605 IEPGEKICAILSTPDFSPDKFLVFFTKKGMIKRTQLSAFGRVRIGVRSIELKEGDALVTA 664

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +  H    + + +  G      A  +         +  +     +  I  +       K
Sbjct: 665 QILEHENQELFMATAKGMCIRFKASGVRDMGRTAMGVIGMRLKEGDFVIGASIALSDQHK 724

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRK 669
           LL +SSKG              R G   +           + +V    G  + ++ +N K
Sbjct: 725 LLTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTPKTGNLVAIVHVDEGQDLMLLTKNGK 784

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           ++   ++ I E  R   GV+L S +  G+ 
Sbjct: 785 MIRMPMESIRETGRHASGVKLVSVEGDGVV 814


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 249/766 (32%), Positives = 432/766 (56%), Gaps = 30/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S     +   ++ V L+  +E+ Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E+G
Sbjct: 1   MSEELIDIHGKIEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    +F KSA +VG  +   HPHGD S+YD++VR+AQ F  RY L+ G+GNFG +DGD 
Sbjct: 61  LTPDKSFHKSANVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M +++  +L+ + +D V+FR  ++E+  EP V PS+FPNLL NG++GIAV
Sbjct: 121 PAAYRYTEAKMNKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ E+ +A + +IDNP+ +++ ++ +I GPDFPTG +I+  RE+I ++Y  
Sbjct: 181 GMATSIPPHNLGEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIM-GREAIKKAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRA+  +EE+  G   I+VTEIPYQV K+ L+EKI +L+  K+I  + D+RDES
Sbjct: 240 GRGKIIVRAKTEIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDES 299

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++     ++    R ++P++++ ++F  S ++  + + +  +  G  P+++ L  IL+ +
Sbjct: 300 SKKTGIKIVIETRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGE-PKILNLVDILQYY 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSL 423
           L +++EV+ RR+ F +     R+ +++GLLIA  NIDE+I IIR+  D     ++ RFSL
Sbjct: 359 LKYQKEVVTRRTKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSL 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AIL++RLR L+ LE+ +++ E   L  +    +S+L S ++  + I  EI E++
Sbjct: 419 SEVQATAILDMRLRRLQGLEKEKLQDEERELGEKIAYFNSILESEEKLLSIIKEEIIEIR 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT   +++        +  I  E +T+ ++++G+I+          K 
Sbjct: 479 DKYKD-----VRRT---QITSMPHEIDIKDTIPNEEVTITLTHQGYIKRLPVDTYKAQKR 530

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               +S++  KE D ++  L     ++IL ++  GK Y L A  +   S    G  I  L
Sbjct: 531 GGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAKGSNIINL 590

Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + L  ++ I T       +    +++ + KG       SE   + R+G   + +  ++++
Sbjct: 591 LPLEKDEKIATIITTRENEDNAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDEL 650

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
              +    + ++ +V +    ++F  + +  M R   GV     K     +++  +I   
Sbjct: 651 VNSLLTADNTNLFLVTKKGMAIMFEENTLRPMGRTATGVIAMRLKKD--DEIVSLEIASN 708

Query: 709 L-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +  +   Y +        +  R GVG    K   ++G    +
Sbjct: 709 DKQVLIISENGYGKRTQVSKYKVQSRAGVGVKTYKITEKTGNIADA 754



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E        +     E     V+ + +G I+  +           + A++ KE D L  +
Sbjct: 594 EKDEKIATIITTRENEDNAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDELVNS 653

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       + L++  G A       L         +  +  L  + +IV+  +  +  ++
Sbjct: 654 LLTADNTNLFLVTKKGMAIMFEENTLRPMGRTATGVIAM-RLKKDDEIVSLEIASNDKQV 712

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
           L++S  G     + S+    +R G         EK   +         D V ++  +  L
Sbjct: 713 LIISENGYGKRTQVSKYKVQSRAGVGVKTYKITEKTGNIADAKIVEESDEVMIINSDGTL 772

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   + +I  +SR   GV++    +  I   I     E
Sbjct: 773 IRTPVAEISLLSRDTSGVKVMRSGENDIISAIEIIQSE 810


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 233/769 (30%), Positives = 383/769 (49%), Gaps = 44/769 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  YLAYA+S I  RA+P++RDG KPVHRRI++AM + G    A F K 
Sbjct: 29  RINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMYDGGFRPNAGFYKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            R+VG+V+ K HPHGD +VYD+L RL QP+  RYPLI+GQGNFG+      AA RYTE +
Sbjct: 89  MRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPGNLGPAAPRYTECK 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +DE+ VDF D Y+  D EPVV P++FPNLL NG+ GIAVGMAT IP HN
Sbjct: 149 MAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEGIAVGMATRIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E     +D+PE S E+LL      + GPDFPTG  I+  + +I + YR GRG   
Sbjct: 209 LREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATIL-GKTAIEQVYRTGRGSII 267

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   +EE+ +   C+VVTE PYQV    L  KIA+L+    +  + DIRDE S    +
Sbjct: 268 QRAVVNIEEI-QNRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIADIRDETSDRSGQ 326

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ +++  +D+++ FP NM  L  G VP+ + LDG +  W+ H+ E
Sbjct: 327 RLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVDG-VPRTLSLDGFVHYWVKHQVE 385

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ FR++    R+ IL+G L A   +DE+IA+IR     +  +  ++    + E Q
Sbjct: 386 VIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVGLMDLLKIDEVQ 445

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E   L+ +   ++ ++ +  +Q   +  E+ E+ E F 
Sbjct: 446 ADAILAMQLRRLAALERQKILDEHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFG 505

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RRT        +     + +I +E + V I+  G+         ++       
Sbjct: 506 DE-----RRTAIV---PFNGEMTDEDLIPEEEVVVTITRDGYAKRTRVDNYKAQHRGGKG 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
           +     ++ D ++      T   +L  +  G+ Y      +  G     G+ +  L+   
Sbjct: 558 VRGAKLRQDDVVEHFFVTTTHHWLLFFTNLGRVYRAKGYEIPEGGRDSRGQHVANLLAFQ 617

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-----EK 649
            ++ I        Y+    L++ +  G       ++  +    G   + +        ++
Sbjct: 618 PDEAISQVLAIRDYEQAQYLVLATKSGLVKKTALADYNSPRSGGLIAINLRETEDGQVDE 677

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +     V   D + +V    + L F+     +  M R   GVR   +++     ++  ++
Sbjct: 678 LVSAALVNAEDDLILVSCGGQSLRFNCTDEAVRPMGRSTSGVRGMRFRED--DALLTMEV 735

Query: 706 CEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            E  +  +      + +        +  RGG+G  V       G  + +
Sbjct: 736 IEHDSDLLVVTEGGFAKRSAIDTYPVRGRGGLGVKVANLVEDRGGLVGA 784



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 28/263 (10%)

Query: 486 FSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIR------SL 533
           +         R          +   A    L     E+    V+ +  G ++        
Sbjct: 596 YEIPEGGRDSRGQHVANLLAFQPDEAISQVLAIRDYEQAQYLVLATKSGLVKKTALADYN 655

Query: 534 KSHSVDLSALHFKEG-----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
              S  L A++ +E      D L  A   +  D ++L+S  G++      +  + R  G 
Sbjct: 656 SPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSLRFNCTD-EAVRPMGR 714

Query: 589 AIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLK 643
           +   +  +    +  ++T  V +    LLVV+  G A            R G   K    
Sbjct: 715 STSGVRGMRFREDDALLTMEVIEHDSDLLVVTEGGFAKRSAIDTYPVRGRGGLGVKVANL 774

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           V     +   +KV   D V V+ E+  ++   + +I    R   GV      +G     +
Sbjct: 775 VEDRGGLVGALKVHEEDEVLVIMESGNIVRIPVAEISRTGRTTQGVTFARPNEGDRIIAV 834

Query: 702 CFKICEGLTWIDSAGRSYNRSEN 724
              +    T +D A  + N+SE 
Sbjct: 835 ARNLE---TSLDDAEEAENKSEE 854


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 442/745 (59%), Gaps = 25/745 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+ 
Sbjct: 2   TTEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGM
Sbjct: 122 AMRYTESKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+  A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GR
Sbjct: 182 ATDIPPHNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  
Sbjct: 242 GSIKMRAVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIVL P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           A RR  + RR +FR+  I  R+ IL+GL+IA+LN+DE+I IIRNED PK  +++RF L++
Sbjct: 357 AFRRTTVTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNPKAELIARFQLSD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AILNLRLR L KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + 
Sbjct: 417 EQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F+       RR+   E +   KA  +  +   EP+TV++S +GW+R  K H +D+  L +
Sbjct: 477 FASP-----RRSPLVERAE-AKAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GDS     +  +   ++ + + G++Y L   +L S R  GE I   I L     +   
Sbjct: 531 KAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV 664
            + + + K+L+ S  G  FI +  ++++  + GK  + ++   K+     +  G+   +V
Sbjct: 591 LMAEESRKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLV 650

Query: 665 --GENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
                 ++L+F + ++PE+S+GKG ++ +        +   +S ++       L ++ S 
Sbjct: 651 AMSNTGRVLVFPVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLV 740
            R       D+  + G+R   G+ +
Sbjct: 710 KRKITLKPTDIEHYRGERARKGTQL 734


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/833 (29%), Positives = 400/833 (48%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILPLVK 425

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAP 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 79/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
                 K  S    A+   E D L         + ILL +  GKA   P  +L    S  
Sbjct: 653 DLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 585 GHGEAIQLL---------------------------------IDLNHNQDI--------- 602
             G     L                                 +++   +           
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSL 772

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                  + +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/834 (31%), Positives = 407/834 (48%), Gaps = 111/834 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 10  QVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 70  VGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 130 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I+NP+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 190 VVDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARV 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IEKIA+++  K+I  +  ++DES      V+    R
Sbjct: 249 EEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  ++  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++
Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALN-GGRPEQLTLRDFLSHFLTFREDVVARRTAY 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLID 427

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL SL  +   ++  EL  L A+      +L S +
Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REVK++F+       RRT   E+S        + +IE+E + V I++ G+
Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S+G+      S+   
Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQ 690
             R GK  +K+     +  V      D V +V    + + FS   +     R   GVR  
Sbjct: 660 VKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGI 719

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   +                                             
Sbjct: 720 RLASG--DRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTQEAEADEEEDAVEAGQLSPT 777

Query: 706 ------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       +    R   +  +     +  RGG G    +   R G+ ++S
Sbjct: 778 RYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRGGQLVAS 831


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/754 (37%), Positives = 453/754 (60%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLIERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +       +          I E  T  I +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/754 (37%), Positives = 453/754 (60%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLIERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +       +          I E  T  I +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 250/762 (32%), Positives = 399/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLAL-DKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   E + + IS   +++          +     ++
Sbjct: 483 ------RRTTIEFDADDIRDIEDIIT-NESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G   LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++   I+    +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 525 SNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPA 577
           + RG ++ +            + AL   EGD L  A H     ++++L +  G A   P 
Sbjct: 619 TKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPH 678

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             +         ++ +   N    +V+  +      +L+V  +G        +     R 
Sbjct: 679 EKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSVLIVCDQGFGKRSLVEDFRETNRG 738

Query: 638 GK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           G       +   +   +  +     D + ++    + +  ++  +  M R  +GVRL   
Sbjct: 739 GVGVRSILINERNGNVLGAIPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHL 798

Query: 693 KDGG 696
           K+G 
Sbjct: 799 KEGD 802


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 228/758 (30%), Positives = 394/758 (51%), Gaps = 33/758 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM   GL       KS
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRL Q +  RYP++  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  ++++ +  +  Y+E   EP V P+  PNLL NG SGIAVGMAT+IP HN
Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EIC   LALID P +++  ++E++ GPDFPTGG    S++ I ++Y  G    +VR +
Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGG--RISKQGIQDAYTTGHASLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             +EE       I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES   +   ++ 
Sbjct: 241 ARIEE-KNNRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + +++ F +    +  G  P+V+PL   ++ +L HRR+V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNGE-PRVLPLIDTMRYFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+IA+IR  +   + +  +++RF L+E Q  AI
Sbjct: 359 RTQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMARFELSEPQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ SE D L     K+ ++L   K  W +I  EIRE+++ +     
Sbjct: 419 LDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGDEKLLWREIKKEIREIRDRYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RR+T    S  ++   ++ +I  E + + ++  G+++     +              
Sbjct: 477 ---RRSTI---SALEEDISKEDLIAVEDMVITMTEAGYLKRTTLDAYRAQSRGGRGSRGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID-LNHNQ 600
             +E D         T D +L  +  G+ +     +L        G  I+ L+  L  ++
Sbjct: 531 KLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARDAKGSHIRNLLPSLRDDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
           +I +      ++     +  +  G       ++    T  G   + +  ++++  V  V 
Sbjct: 591 NIASVQSIRGFEEEGSFVFATKNGMVKRTLITDYGNITSAGLIAINLQEDDELISVGIVK 650

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDS 714
            G  + +     K + F+ D++ +  R   GV     K D  +  +           +  
Sbjct: 651 NGSDIVLATRGGKAMRFAADEVRDTGRATQGVIGIRLKGDDRVVSMALVPADTESELLAI 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     +           RGG G +      ++G+ ++
Sbjct: 711 SEHGLGKRTPVSDYPSKGRGGQGVITLDVTEKTGRLVT 748



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 18/197 (9%)

Query: 515 IEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+E   V  +  G ++           S  L A++ +E D L           I+L + 
Sbjct: 601 FEEEGSFVFATKNGMVKRTLITDYGNITSAGLIAINLQEDDELISVGIVKNGSDIVLATR 660

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTA--FVYDSTCKLLVVSSKGNAF 624
            GKA    A  +   R  G A Q +I   L  +  +V+      D+  +LL +S  G   
Sbjct: 661 GGKAMRFAADEV---RDTGRATQGVIGIRLKGDDRVVSMALVPADTESELLAISEHGLGK 717

Query: 625 IVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680
               S+  +  R G+  + +   EK    + L     G+ + V+ +   ++   ++++  
Sbjct: 718 RTPVSDYPSKGRGGQGVITLDVTEKTGRLVTLARVDGGEELMVLTQGGLVIRTRVEEVRV 777

Query: 681 MSR-GKGVRLQSYKDGG 696
             R  +GV++ +  D  
Sbjct: 778 TGRNAQGVKVINLSDKD 794


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/835 (31%), Positives = 412/835 (49%), Gaps = 114/835 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR V
Sbjct: 26  VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 206 VDATLALIEDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALN-GGRPEQLTLRKFLTSFIDFREDVVARRTAYN 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 384 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLIDD 443

Query: 419 --------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L+S ++
Sbjct: 444 PTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             + IA E+ EV+E F+       RRT   E+         + +IE+E + V +++ G+I
Sbjct: 504 IMSIIADELAEVRESFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 556 KRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     I      D         +++  +S G       S+    
Sbjct: 616 GGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
            R GK  +K   E +    +   +    D + +V    + + F   ++    SR   GVR
Sbjct: 676 MRNGKIAMKFEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVR 735

Query: 689 LQSYKDGGISDVICFKI------------------------------------------- 705
                 G   +V+   +                                           
Sbjct: 736 GIKL--GEDDEVVSMSVIRHSKYTPEQRSAYLKMRRAMAGLTDEDASDEDAVEDPNFSTE 793

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   E L    +AG S   S +      G RGG+G        R G  ++S
Sbjct: 794 LFAEMSAAENLILTITAGGSGKLSSSHDYPVRG-RGGMGVTAMDKAMRGGALVAS 847



 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-RGHGEAIQLL 593
            +SV +  +   E D +          +    + + ++  L     ++G      + +  
Sbjct: 729 RNSVGVRGIKLGEDDEVVSMSVIR-HSKY---TPEQRSAYLKMRRAMAGLTDEDASDEDA 784

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           ++  +    + A +  +   +L +++ G+  +    +     R G     +        +
Sbjct: 785 VEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMDKAMRGGAL 844

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
                V   D + +     + +   +D I   SR   GVR+  +  G   +V+   
Sbjct: 845 VASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRI--FNTGKGEEVVSVA 898



 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +        +V +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 820 HDYPVRGRGGMGVTAMDKAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRS 879

Query: 638 --GKTFLKVSSEEKMKLV--VKVTGDH 660
             G         E++  V  +   GD 
Sbjct: 880 AGGVRIFNTGKGEEVVSVAWIADNGDD 906


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/757 (34%), Positives = 443/757 (58%), Gaps = 24/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T+V +  + + L+   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTES-TVVYDAEEQIPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G+  D  
Sbjct: 60  LKSTAKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQDDPK 119

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+   ++++L  + +  VD++  ++    EP V P+K P +L NGT+GIA
Sbjct: 120 SFAAMRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNGTTGIA 179

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++NP  ++ +L E+++GPD PT   I+  RE I++ Y 
Sbjct: 180 VGMATDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDIIKMYE 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  ++RA W  E         V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 240 TGKGSLKMRAIWTKEGNDA-----VITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDE 294

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  LD IL 
Sbjct: 295 SDHENPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSLDKILG 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           +WL+ R   + RR   R+  ++RR+ +L   LIA+LN+DE+I I+R EDKP+ V++ RF 
Sbjct: 355 DWLSFRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKPREVLMQRFD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q + IL+ RLR L +LEE +I+ E D L  E++ I+  L S +     I  ++ +V
Sbjct: 415 LTEEQANYILDTRLRQLARLEEMKIRGEQDELQKERDTIEKTLGSARMMKTLIKKDMLQV 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            +      + G  R +        +A  +  ++  EP+TVV+S +GWIRS K H +D ++
Sbjct: 475 LK------EHGDERRSPIVTREESQAFSEDQLLTSEPVTVVLSEKGWIRSAKGHEMDPAS 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +   ++L+ + G++Y L A  L S RG GE +   ++      I
Sbjct: 529 LSYKAGDEFKFASRGKSNQSVILIDSTGRSYALAAHTLPSARGQGEPVTGRLNPPSGATI 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGD 659
               +     ++L+ S  G  F+ +  ++++  + GK  L +    ++    ++  +   
Sbjct: 589 EGMLMGSEDQRVLLASDAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNT 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTW--ID 713
            +A      +LL+F + ++PE++RGKG ++ +     + +    VI   + +      + 
Sbjct: 649 WLAAFSNEGRLLVFKVTELPELARGKGNKIINIPSARVQNREEFVIALAVVQASDTLKVV 708

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R  N    DL  ++G+RG  G+ +P+GF +    
Sbjct: 709 SGKRHLNLKFKDLEHYIGERGRRGNKLPRGFQKVDAV 745


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/752 (33%), Positives = 407/752 (54%), Gaps = 30/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM EMG+  G++ +KS
Sbjct: 17  RVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSGSSHRKS 76

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           + +VGEV+G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 77  SSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAMRYTEAR 136

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +AE +L  +++D VDF+  Y++   EP V PS FPNLL NG+SGIAVGM+T+IP HN
Sbjct: 137 MAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNGSSGIAVGMSTNIPPHN 196

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LIDNP+  +  L+EY+ GPDFPTG   +  + +I  +Y  GRG   VRA 
Sbjct: 197 LGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGA-NIVGKNAIHAAYATGRGRLTVRAE 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +  EE   G   IV+TEIP+Q  K+R++E+IA+ +    I  + D+RDES  D   V+  
Sbjct: 256 YEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSDLRDESDRDGVRVVIE 315

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + D++   + +   +E+ F +    L  G  P+V+ L   L+E++AHR+EV+ RR
Sbjct: 316 CKRGANVDVVENQL-LDHHLESTFGVINLALVDGE-PRVLTLKETLEEYVAHRKEVVRRR 373

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           S F +   + R  IL+G L A  N+D ++ +IR+    D+ K  +   F  +  Q   I+
Sbjct: 374 SEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALEETFDFSTEQAQHIV 433

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++L SL  +E  +++ E + + AE E+++++LN   +  + I  E+R VK+ +      
Sbjct: 434 RMQLGSLTSMEAAEVEDEYEEVEAEIERLETILNDESELLDVIKDELRAVKDEYDD---- 489

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
             RRT+  E    D    ++ +I +E   VV++   +I+ + +   D             
Sbjct: 490 -DRRTSIVE---DDGTVTREDLIPEEECLVVVTEDDYIKRMPADRFDAQHRGGKGIIGAD 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KEGD +     A+T D +L  +  G+ Y L    +   S    G++   LI+ +  ++I
Sbjct: 546 PKEGDRVSTVFRANTHDYLLAFTNHGQVYRLRTYEIPEMSRTARGKSAVNLINFDDGEEI 605

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                   +D    + + + +G       SE       G    K+   +++   V   G+
Sbjct: 606 TAVVSMDEFDDDECITMATRQGYVKRTCCSEFENILSTGIIAAKLEDGDELVDAVVTDGE 665

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
             + +  E+   + F   +  +M R  +GVR    +DG  ++ V+     +    +    
Sbjct: 666 SDLVIATEDGMTIRFDETEARQMGRTARGVRGIDLRDGDNVAGVVATDEHDERALLTVTE 725

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           R Y +           R G G +  K   R+G
Sbjct: 726 RGYGKRTPLSEYRTQSRYGKGLIDIKTGDRNG 757



 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 20/229 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           +      A +     + +    + + +G+++              + A   ++GD L  A
Sbjct: 600 DDGEEITAVVSMDEFDDDECITMATRQGYVKRTCCSEFENILSTGIIAAKLEDGDELVDA 659

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD--S 610
           +       +++ + DG             R  G   + +  IDL    ++      D   
Sbjct: 660 VVTDGESDLVIATEDGMTIRFDE---TEARQMGRTARGVRGIDLRDGDNVAGVVATDEHD 716

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGE 666
              LL V+ +G       SE    +R GK  + + + ++   V  V      DHV V+  
Sbjct: 717 ERALLTVTERGYGKRTPLSEYRTQSRYGKGLIDIKTGDRNGGVTAVNAVAEDDHVIVMSA 776

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDS 714
             +++   ++ +  + R   GV +          V    +  G    DS
Sbjct: 777 TGQIMRCPVEDVSTVGRNTMGVTIMDVAAD--DTVASVDVIPGTAIEDS 823


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 262/769 (34%), Positives = 417/769 (54%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+ N      +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 3   DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +GL    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDG
Sbjct: 59  LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GI
Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMATSIP H + EI +A + +++NP   ++++LE++ GPDFPTGGI +  +  I+E+Y
Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGI-IYGKAGIIEAY 237

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  +VRA+  VE+  +    IV+ E+P+Q  K++L+E+I++L   K+I  + ++RD
Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R    ++++  ++ L+ MET F + +  +     P++  L  +L+ 
Sbjct: 297 ESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKE-PKIFTLLELLRL 355

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420
           +L HR+ ++ RR+ F ++    R  IL+G LIA  NIDEI+ +I+    P   K  ++ R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F+L+E Q  AIL +RL+ L  LE  +IK E  NLL     ++ +L S  +    +  E+ 
Sbjct: 416 FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           EVKE FS      +RRT   E          + +I  EP+ V +S +G+++ +   + + 
Sbjct: 476 EVKEQFSS-----QRRTEIQEAYEN---IDIEDLIANEPMVVSMSYKGYVKRVDLKAYER 527

Query: 541 SALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAI 590
                K        E D ++    A+T D +L ++  G+ Y L    +        G+AI
Sbjct: 528 QNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAI 587

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646
             LI L  ++ I+       +     L   +  G       SE  +N    G   + +  
Sbjct: 588 VNLISLAPDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDK 647

Query: 647 EEKMKL--VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +++    +V     H+ +       + F ++ + E+ R  +GV      +         
Sbjct: 648 GDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVV 707

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +G   +  +     +           RGG G +  K   ++G  +S
Sbjct: 708 ISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQKTGNLVS 756


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 399/762 (52%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +   +L   ++E YL Y++S I  RA+PD+RDG KP  RR+++AM ++ L  GA  +
Sbjct: 5   DEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD  AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L L+ NP+ S++++L+ + GPDFPTGGII  S E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR+EV+
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLAL-DKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  +L+G L A   +D ++  IR   N++  K  ++  F  TE Q  
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E + LL +      +L+      + I  E++++ +    +
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDLLKHHKVA 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   E + + IS   +++          +     ++
Sbjct: 483 ------RRTTIEFDADDIRDIEDIIT-NESVIITISGDDYVKRMPVKVFKEQRRGGHGVT 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G   LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++   I+    +D+   L + + +G    V         +KG   L++   +++    
Sbjct: 596 PGEELAAILNIKNFDNAGFLFLATKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAAC 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +  D   V +       + F  +++  M R  +GVR  S K+     V C  + E  + 
Sbjct: 656 HIVSDEEKVMLFTHLGMAVRFPHEKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    + + +           RGGVG        R+G  L +
Sbjct: 716 LIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERNGNVLGA 757



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 525 SNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPA 577
           + RG ++ +            + AL   EGD L  A H     ++++L +  G A   P 
Sbjct: 619 TKRGVVKKVSLDAFSNPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPH 678

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             +         ++ +   N    +V+  +      +L+V  +G        +     R 
Sbjct: 679 EKVRPMGRTARGVRGVSLKNEEDKVVSCQIVTENQSVLIVCDQGFGKRSLVEDFRETNRG 738

Query: 638 GK----TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           G       +   +   +  +     D + ++    + +  ++  +  M R  +GVRL   
Sbjct: 739 GVGVRSILINERNGNVLGAIPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHL 798

Query: 693 KDGG 696
           K+G 
Sbjct: 799 KEGD 802


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 238/766 (31%), Positives = 397/766 (51%), Gaps = 29/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEITTPEGGILIPIPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +    +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 AAAYRYTEAKMAKIAESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI  A  A IDNPEI+I++L ++I GPDFPTGG I   ++ I ++Y+ 
Sbjct: 181 GMATNMPPHNLREIASAISAYIDNPEITIDELCKHIKGPDFPTGGTIF-GKKGIRQAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR R+ +E   +G   I+ TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGRFTIEVDKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R     +++  +F  + +++ F +    L     PQ + L  +++ +
Sbjct: 300 SDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALV-EGRPQTLTLKDLVRCF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR EV+ RR+ F ++  + R  IL+ L++A  NIDE+IAIIR+       K  ++ RF
Sbjct: 359 VNHRIEVVTRRTRFDLRKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKRF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              E Q  AI++++L+ L  LE   ++ EL+ L      +  LL   ++    +  E  E
Sbjct: 419 GFDEVQSQAIVDMQLKRLTNLEIKDLRKELEELEILIAHLKDLLEHPEKIRALVKDETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + + F        RRT        +     + +I+KE + ++ISN G+I+          
Sbjct: 479 IADKFGDE-----RRTDIVADEVEELNI--EDLIQKEEMVILISNLGYIKRIPVSAYKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                  ++ +  E D +     A T D I+ ++ +GKAY L    +   S    G  I+
Sbjct: 532 NRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ ++ +++I        +  +  LL+ ++ G    V          +G   +K+   +
Sbjct: 592 SLLSVSGDEEITAVVSLKEFSDSTYLLMATAAGVVKKVTTDNFQNAKTRGIIAIKLDDGD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           K+   +  TG D + ++  + + L  + ++I  + R  +GV       G        ++ 
Sbjct: 652 KLVSAILTTGKDEIMLITRHAQALRMTEEEIRPLGRASRGVAGIKLAQGD-ELTGALRVA 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +    +      Y +           R   G  +     ++G+ + 
Sbjct: 711 DNQKMLIMTENGYGKRVEFSEFTPHGRATGGQRIYTLSEKTGEVVG 756


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 234/761 (30%), Positives = 405/761 (53%), Gaps = 38/761 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KS
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD S+YD++VRL Q +  RY L+  QGNFG+IDGD  AA RYTEAR
Sbjct: 63  AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  ++++ V  +  Y+E   EP V PS  PNLL NG +GIAVGMAT+IP HN
Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI    LALID P+I++++++ +++GPDFPTGG    SR+ I E+Y  G  G +VR +
Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGG--RISRQGIREAYATGHAGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314
             ++E   G   IV+TEIPYQV K+ LI+ I+ +  A +IP +  +RDES   +   ++ 
Sbjct: 241 ARIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVV 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P L++  ++  + +++ F + MN+  +   P+V+PL   ++ +L HRR+V+ R
Sbjct: 300 ELKRGAIPTLVLNQLYKYTQLQSTFTV-MNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+ A  +IDE+I  IR  +   + +  ++ RF+LTE Q  AI
Sbjct: 359 RTQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQRFTLTEIQAQAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  ++ +E D L     ++ S+L   +  W +I  EIR++++ +     
Sbjct: 419 LDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGDERLLWREIKKEIRDIRDRYGDE-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------AL 543
              RR+T  ++        ++ +I  E + + ++  G+++  K  +              
Sbjct: 477 ---RRSTITDLED---DISKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQSRGGRGASGG 530

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQ 600
             +E D+        T D +L  +  G+ +     +L        G  I+ LI  L  ++
Sbjct: 531 RLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLIPALREDE 590

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
           +I +      ++     +  + +G       +E    T  G   + +   +++  V ++ 
Sbjct: 591 NIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITSAGLIAINLQPGDELIGVDIQR 650

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI----CEGLTW 711
            GD V +  +  + + F+  ++ +  R   GV     ++G   +V+   +     E    
Sbjct: 651 DGDDVVLATKEGQAMRFAATEVRDTGRATQGVIGIRLREG--DEVVSMALVPSGEESSEL 708

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +  +     +           RGG+G +      ++GK ++
Sbjct: 709 LAISECGLGKRTPVSDYPSKGRGGLGVITLDVTDKTGKLVA 749



 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 78/191 (40%), Gaps = 19/191 (9%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + RG ++           S  L A++ + GD L         D ++L + +G+A   
Sbjct: 608 VFATKRGMVKKTLITEYGNITSAGLIAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRF 667

Query: 576 PAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESE 630
            A  +   R  G A Q +I   L    ++V+  +    + + +LL +S  G       S+
Sbjct: 668 AATEV---RDTGRATQGVIGIRLREGDEVVSMALVPSGEESSELLAISECGLGKRTPVSD 724

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
             +  R G   + +   +K   +V +T     + + V+ E   ++   ++++    R  +
Sbjct: 725 YPSKGRGGLGVITLDVTDKTGKLVALTHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQ 784

Query: 686 GVRLQSYKDGG 696
           GV++ +  +  
Sbjct: 785 GVKVINLGEKD 795


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/833 (29%), Positives = 398/833 (47%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++  R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVNFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVK 425

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEELGVSLTVP 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 80/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
                 K  S    A+   E D L         + ILL +  GKA   P  +L    S  
Sbjct: 653 DLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 585 GHGEAIQLL---------------------------------IDLNHNQDIVT------- 604
             G     L                                 +++   +   +       
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEELGVSL 772

Query: 605 -----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                  + +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TVPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/764 (33%), Positives = 421/764 (55%), Gaps = 34/764 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + ++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  G
Sbjct: 3   DLLNNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHG 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           A FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGDSAAA 
Sbjct: 63  AKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMAT
Sbjct: 123 RYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMAT 182

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN +EI     AL+ NP+IS+ +L+E+I  PDFPTGGII   ++ I+++Y  GRG 
Sbjct: 183 NIPPHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIF-GKKGIMDAYETGRGR 241

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +VRA+  +E+  +    IV+ E+PYQV K+RLIE IA L+  K I  + ++RDES  D 
Sbjct: 242 IKVRAKTHIEQKSK-KEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++ ++F  + M+T F + M  +     P++  +  ILK ++ HR+
Sbjct: 301 MRVVIELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQE-PRIFGIITILKHFINHRK 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            ++ RR+ F ++    R  IL+GL  A   I+++I +IR   NE+  K  +VS F  ++ 
Sbjct: 360 TIIIRRTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSEFDFSDI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  +I+ +RL  L  LE  +I++EL  L+   E ++S+L S +   + IA E  EV + +
Sbjct: 420 QAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEEVLHSIIAEEFDEVLDTY 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
             +     RRT    +         + +I  EP+ V I++RG+I+          K    
Sbjct: 480 GSNE----RRTE---IEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLTLYEKQKRGGK 532

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
             +A+   E D ++     +T D +L ++  G+ + L    +  G     G+A+  L++L
Sbjct: 533 GKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIAKGKAVVNLLNL 592

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I +      +     L+  + KG       SE       G   + +  ++ +   
Sbjct: 593 MADERIRSIIPTTDFSEDKGLVFFTQKGVVKRTNLSEFSNIRSNGVRAIVLDEDDALITA 652

Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---DGGISDVICFKICE 707
                   ++ ++ +  + + F I++  E  R  +GVR   +K   D  I   I     +
Sbjct: 653 KIADQSIKYLFIMTKLAQCIKFDIEKTREQGRSTRGVRGIKFKHPEDEVIDANIIANDEQ 712

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  +  A +   +  +     L  RGG G +  K   ++GK++
Sbjct: 713 EILIV--AEKGIGKRTDAGEYRLTNRGGSGVIAMKMTSKTGKYV 754



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 531 RSLKSHSVDLSALHFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHG 587
           R     +  +  + FK  E + +   + A+    IL+++  G      AG   L+ RG  
Sbjct: 680 REQGRSTRGVRGIKFKHPEDEVIDANIIANDEQEILIVAEKGIGKRTDAGEYRLTNRGGS 739

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I + +     + +V   + D +  ++ ++  G    V+   I  ++R       V   
Sbjct: 740 GVIAMKMTSKTGKYVVGCLMVDESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK-G 798

Query: 648 EKMKLVVKV 656
           + +  V + 
Sbjct: 799 DDVANVSRC 807


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 247/843 (29%), Positives = 403/843 (47%), Gaps = 119/843 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +VA  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG+ GIAVGMAT+IP HN+
Sbjct: 136 QKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + ++++ I GPDFPTG  I+  R  I  +Y  GRG   +R   
Sbjct: 196 SEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSIVMRGVA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + D+++  ++  + ++T F  N+  L+ G  P+ + L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGANVVALN-GGKPEQLTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            + ++    R  +L GL IA  NIDE+I +IR    P+                      
Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTRRWPAEDVESLIRL 433

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                        ++L+E Q  AIL LRL  L  L   +I  EL+ + AE +    +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  V++ F        RRT   E+         + +I +E + V +S+ 
Sbjct: 494 RVRIQTIVKEELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +      +T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     + S+ 
Sbjct: 606 LPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRNKLSDF 665

Query: 632 IANTRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +  +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGRNSIGV 725

Query: 688 RLQSYKDGGISDVICFKI----------------------------CEGLTWI------- 712
           R  S   G    +I   I                             E +  +       
Sbjct: 726 RGISLASG--DSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEVTEE 783

Query: 713 -------------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKF 750
                                + + + +  +     +  RGG G        ++   G+ 
Sbjct: 784 GQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTAEIGEL 842

Query: 751 LSS 753
           +++
Sbjct: 843 VAA 845



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 86/295 (29%), Gaps = 73/295 (24%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
              T  G+       +   ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRNKLSDFVQV 668

Query: 539 ---DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR-------- 584
                 A+  +E GD +         D +LL +  G+       ++   +GR        
Sbjct: 669 NRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGRNSIGVRGI 728

Query: 585 --GHGEAIQLLIDLNH-----------------------NQDIVTAFVYDS--------- 610
               G++I  +  +NH                        ++   A V +          
Sbjct: 729 SLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEVTEEGQLSD 788

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV 656
                       +L VS KG        +   + R GK              ++     V
Sbjct: 789 ERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPV 848

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEG 708
              + + +V +  +L+   +  I   SR  KGV +  + KD  +  V      EG
Sbjct: 849 EDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEG 903


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/831 (30%), Positives = 406/831 (48%), Gaps = 107/831 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  ++++ V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP++  E L++YI GPDFPTGG+++  R    ++Y  GRG   +RA+   
Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRT 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  +   V+    R
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR+++
Sbjct: 314 DATAEVVLNQLYRFTPMQTYFGCNMLALN-GGKPEQLTLHRFLSLFITFREEVVARRTAY 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------- 418
            ++    R  +L GL +A  N+DE++A IR                              
Sbjct: 373 DLRKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALID 432

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S +
Sbjct: 433 DPSHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV+E+F+       RRT   E+         + +IE+E + V +++ G+
Sbjct: 493 RIMQIISDELREVRELFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGY 544

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  K+ D +     A+T  ++L  +T G  Y L    L 
Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLP 604

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQ 690
             R GK  + +    ++         D V +V ++ + + F   ++      +  GVR  
Sbjct: 665 VMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGI 724

Query: 691 SY-----------------------------------------KDGGISDVIC------- 702
                                                       D G +D          
Sbjct: 725 RLLGDDRVVSMSVIRHFDASADDRAAYLKMRRQLAGAEDDGTSDDEGNADAALSAEQFAE 784

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  E L  +    R   +  +     +  RGG+G        R G  ++S
Sbjct: 785 MQAAENL-ILTITARGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVAS 834


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/762 (33%), Positives = 395/762 (51%), Gaps = 31/762 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +++ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ NP  SIE++LE + GPDFPTG  I+   E I  +Y  GRG  +VR
Sbjct: 185 HNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTG-GIICGGEGIRSTYHTGRGKIKVR 243

Query: 254 ARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IA+L+  K +  + D+RDES +D   V
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR EV+
Sbjct: 304 VLELKKGESSEIVINRLYKFTDIQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRTEVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IRN D     K  +V  F  TE Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVENFGFTEQQSV 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +I+ E D LL +      +L       + I  E+++++ +    
Sbjct: 423 AILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRVLADEGLVKDIIRNELQDIQRVHKTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                 R T  E    D   ++  +   EP+ + IS   +++          K     +S
Sbjct: 483 ------RRTRIEFDADDIRDIEDIIT-NEPVIITISGDDYVKRMPIKVFREQKRGGHGVS 535

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LN 597
               K+G D LK    A T D +L+ +  G+ Y L    L  G  R  G+ I   ++ + 
Sbjct: 536 GFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIR 595

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +        +++   L + +  G    V         +KG   L++   +++    
Sbjct: 596 PGEQLAAVLNVKNFENAGFLFLATKHGVVKKVALEAFSNPRKKGIRALEIDDGDELIAAA 655

Query: 655 KVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
            +T +   V +       + F  D++  M R  +GVR  S K+     V C  + +  + 
Sbjct: 656 HITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVVACQIVKDDQSV 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +      + +           RGGVG        R+G  L +
Sbjct: 716 LVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERNGDVLGA 757



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 13/227 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   A L     E      + +  G ++ +            + AL   +GD L  
Sbjct: 594 IRPGEQLAAVLNVKNFENAGFLFLATKHGVVKKVALEAFSNPRKKGIRALEIDDGDELIA 653

Query: 554 ALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           A H  + + +++L +  G A   P   +         ++ +   N N  +V   +     
Sbjct: 654 AAHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVVACQIVKDDQ 713

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            +LVV   G     +  +     R G       +   + + +  +     D + ++    
Sbjct: 714 SVLVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERNGDVLGAISVTDNDSILLMSAQG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFKICEGLTWID 713
           + +  ++  +  M R  +GVRL   KDG I   +    + E  T  D
Sbjct: 774 QAIRINMQDVRVMGRSTQGVRLVHVKDGDILVAMEKLSLNEDETLAD 820


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/737 (34%), Positives = 394/737 (53%), Gaps = 63/737 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 1   MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 61  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +RA+  VE
Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRAKTRVE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  W IV+ EIPYQV K+ +IEKIAE    KRI  +  ++DES  +   V+    R 
Sbjct: 240 EIRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  +F  + M+T F  NM  L+ G  P+ + L G L  ++A R EV+ RR+++ 
Sbjct: 300 ATAEVVLNQLFRFTPMQTSFGCNMLALN-GGRPEQLTLRGFLTAFIAFREEVVARRTAYD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  IL GL +A  N+DE++A IR+                              
Sbjct: 359 LRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDD 418

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +      ++L+E Q  AIL LRL+ L +L   ++  EL  L A+ ++  ++L S ++
Sbjct: 419 PTHRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               IA E+REV++ F+       RRT   E++        + +IE+E + V +++ G+I
Sbjct: 479 IMEIIADELREVRDQFAVP-----RRT---EITDWSGDMDDEDLIEREEMVVTVTSGGYI 530

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS +  KE D +     A+T  ++L  +TDG AY L    L  
Sbjct: 531 KRTALADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQ 590

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     +      D      +  +++  +  G       S+    
Sbjct: 591 GGRTAKGKAIVNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNV 650

Query: 635 TRKGKTFLKV-SSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
              GK  +K       M L+   +    D V +V  + + + F    +    SR   GVR
Sbjct: 651 KSNGKIAMKFEDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVR 710

Query: 689 LQSYKDGGISDVICFKI 705
                  G   V+   +
Sbjct: 711 GIRL--SGEDKVVSMSV 725



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 26/223 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------LKSHSVDLSALHFKEGDSL 551
           E   A  + +   +  +E   ++++N G  IR            +SV +  +     D +
Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720

Query: 552 KIA-----LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                     A + +R+  L        L      S      A+   +      ++    
Sbjct: 721 VSMSVIRHFEASSEERVAYLKQRRLMAGLTEDEAASDDEDETAVAGQLSPERYAEMSAV- 779

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVT-GDHVA 662
                  +L +++KG   +    +     R G       K  S   +     V   D V 
Sbjct: 780 ----ENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSNGPIIACFPVEMPDQVM 835

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           +     + +   +D I   SR   GVR+  +  G   +V+   
Sbjct: 836 LATSKGQSIRIPVDGISFRSRSAGGVRV--FNTGKNEEVVSVA 876


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 255/839 (30%), Positives = 400/839 (47%), Gaps = 104/839 (12%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
              ++  +   +   +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E 
Sbjct: 8   PTDDTPEIPSYDGPQISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEN 67

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G     +++KSA+ VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD
Sbjct: 68  GYTHNKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGD 127

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +AAA RYTEAR+ + +E +L  +D++ V+F+D Y+ ++SEP V P+++PN+L NG  GIA
Sbjct: 128 NAAAMRYTEARLDKPSEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIA 187

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +A LALIDNPE++   L+EY+  PDFPTG +I+  R   V++Y 
Sbjct: 188 VGMATNIPPHNLGEVIDATLALIDNPELTSSDLMEYVPAPDFPTGAVIL-GRSGAVKAYN 246

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  VEE+  G + I++ EIPYQV K+ +IEKIAEL   K+I  +  ++DE
Sbjct: 247 EGRGSVIIRAKTRVEEIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R    ++++  +F  + ++T F  NM  L+ G  P+ + L   L  +
Sbjct: 307 SDRVGVRVVVELKRDATAEVVLNQLFRFTPLQTSFGCNMLALN-GGKPEQLTLYKFLSYF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF--- 421
           ++ R EV+ RR++F +     R  IL GL +A  N+DEI+A IR  + P           
Sbjct: 366 ISFREEVVARRTAFELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRR 425

Query: 422 --------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                     +L+E Q  AIL LRL+ L  +   ++  EL+ L 
Sbjct: 426 WPAADISQYISLIDDPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELA 485

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            + +    +L S  +  + I+ E++EV E F+       RRT   E          + +I
Sbjct: 486 GKIQNYLEILRSRDRIMSIISDELKEVHEKFAVP-----RRTEIIE---WAGDMDDEDLI 537

Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           EKE + V I+N G+I+          K     +  +  K+ D +     A+T   +L  +
Sbjct: 538 EKEDMVVTITNSGYIKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFT 597

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSS 619
           TDG  Y L    L        G+AI  ++ ++    I      D+        +++  + 
Sbjct: 598 TDGMVYKLKTWRLPLGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATD 657

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQI 678
            G       S+       GK  +K+     +  V +    D   +     K + F    +
Sbjct: 658 AGGVRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDV 717

Query: 679 PE-MSR-GKGVRLQSYKDGGISDVICFKI------------------------------- 705
                R   GVR      G    V+   +                               
Sbjct: 718 RVFKGRDSTGVRGIKLAPG--DKVVSMAVIRHVNASSDERTAYFKMRRALSEDETPNNDI 775

Query: 706 -----------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                       + +  I S G  + +  +     +  RGG G        R    +++
Sbjct: 776 SQERYNELSELEDWILIITSGG--FGKRSSAHEYRVSGRGGQGVAAANLDRRDDTVVAA 832



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 51/246 (20%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  ++ G +R                A+   EG S+     A  +D  LL ++ GKA  
Sbjct: 652 IVFATDAGGVRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIR 711

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------------------AFVYDSTC 612
            P  ++   +G        I L     +V+                      A   D T 
Sbjct: 712 FPTTDVRVFKGRDSTGVRGIKLAPGDKVVSMAVIRHVNASSDERTAYFKMRRALSEDETP 771

Query: 613 K-----------------LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLV 653
                             +L+++S G        E   + R  +G     +   +   + 
Sbjct: 772 NNDISQERYNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRDDTVVA 831

Query: 654 VKV--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-GISDVICFKICEGL 709
                  D + +     + +   +  I    R   GV + + KDG  +  V      E  
Sbjct: 832 AFTVHEEDQIMLATSTGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAYIADTEDS 891

Query: 710 TWIDSA 715
              D  
Sbjct: 892 DVSDDG 897



 Score = 44.4 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 14/130 (10%)

Query: 496 RTTFCEVSRADKATLQQ---AMIEKEPITVVISNRGWIRSLKSHSVDLSALHF------- 545
           R    E    +    Q+    + E E   ++I++ G+ +   +H   +S           
Sbjct: 762 RRALSEDETPNNDISQERYNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAAN 821

Query: 546 --KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
             +  D++  A   H  D+I+L ++ G++   P   + S +G   +   + +    + +V
Sbjct: 822 LDRRDDTVVAAFTVHEEDQIMLATSTGQSIRCPVSGI-SLQGRSSSGVTVFNTKDGEKVV 880

Query: 604 TA-FVYDSTC 612
           +  ++ D+  
Sbjct: 881 SVAYIADTED 890


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/843 (30%), Positives = 408/843 (48%), Gaps = 111/843 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++N+    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDNNS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
           + R  V+  R+ + +     +  IL GL IA  NIDEII II+    P            
Sbjct: 356 SFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSW 415

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 DALNILPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S ++    +  E+ +VKE F+        R T  E    D+    + +I++
Sbjct: 476 ITEYLNILGSRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQR 527

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++  G+I+          K      S L  ++ D         T   +L  S  
Sbjct: 528 EEMVVTVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNI 587

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKG 621
           G+ Y+L    L   + +G G  +  ++ L  ++ I                 ++  ++KG
Sbjct: 588 GQVYSLKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKG 647

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
           N    +  +       GK  +++  ++K+  V     D H+ +  ++ K L F ++ +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRV 707

Query: 681 -MSRGK-GVRLQSYKDGGISDVICFKICEGLT---------------------------- 710
             SR   GVR     +     VI   + +G+                             
Sbjct: 708 IKSRTSDGVRGMRLAED--DSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNS 765

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +      + +  +     +  RGG G +      ++G 
Sbjct: 766 EELGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL 825

Query: 750 FLS 752
            + 
Sbjct: 826 VVG 828



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 78/281 (27%), Gaps = 64/281 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L  +  +++  V                                        
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              D + ++  + KL+   ++ +    R   GV L    DG
Sbjct: 833 KMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDG 873


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 252/771 (32%), Positives = 406/771 (52%), Gaps = 45/771 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSA
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L+++I GPDFPT  I +  +  I E+YR G+G   +RA+ 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAI-INGKSGIEEAYRTGKGKIYIRAQN 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 QIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+E++ RR
Sbjct: 307 IKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQEIIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLN--------------IDEIIAIIRNEDKPKP----VM 417
           S F +  +  R+ IL+GL +A +N              ID    II+   K +       
Sbjct: 366 SLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAK 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +E Q  AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  
Sbjct: 426 KHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKS 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  ++  FS       RRT   E          + +I +E + V +S+ G+++      
Sbjct: 486 ELLSIQNNFSDK-----RRTKITE---NHSDINMEDLINQEDVVVTLSHSGYVKYQPLSD 537

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   S    G
Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L+  + I        Y     + + ++ G       S+       G   + +
Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K       + 
Sbjct: 658 HANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSLI 717

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 718 VPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 12/199 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     +      + +  G ++        K     + A++    D L      
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHANDELIGVALT 669

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L + +GK       ++ +       ++  I +  N  +V+  V  +   +L+ 
Sbjct: 670 DGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKG-IKIKKNDKVVSLIVPKNKGSILIA 728

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           +  G     + S+    +R   G   +K+   + + +  +  +  D + ++ +   L+  
Sbjct: 729 TKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRI 788

Query: 674 SIDQIPEMSR-GKGVRLQS 691
            + ++  + R  +GV L  
Sbjct: 789 RVSEVGVLKRNTQGVILIR 807



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  K+ D +   +       IL+ + +G        +        + 
Sbjct: 692 VRTMGRTASGVKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       ++++++  G    +  SE+    R   G   ++ S  
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811

Query: 648 EKMKLVVKV 656
           EK+  + K+
Sbjct: 812 EKVVALQKI 820


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/754 (36%), Positives = 453/754 (60%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LID P+  +  ++ +I GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL AYLNIDE+I IIR ED+P PV+++RF+++E
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMNRFNISE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLIERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASTKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + ++    LV S  G  F+ + S++++  + GK  + +    ++ L   +     + + 
Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +       +          I E  T  I +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 746


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 748


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 247/841 (29%), Positives = 400/841 (47%), Gaps = 115/841 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+ G+V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+
Sbjct: 76  RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            + A  +L  +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  +ALIDNP I + +L++ I GPDFPTG +I+  R  I  +Y  GRG   +R R 
Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGRA 254

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +      I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+   
Sbjct: 255 TIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  + ++++  I+  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR+
Sbjct: 315 KRDANAEVILNQIYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRRT 373

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------------- 413
            + ++    R  +L GL I+  NIDE+I +IR+   P                       
Sbjct: 374 KYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRL 433

Query: 414 ------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                 +      ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S
Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSS 493

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+  +++ F        RR+   E+         + +I +E + V +S+ 
Sbjct: 494 RLRIMQIVKDELIAIRDEFGTP-----RRS---EIVEGGPDMDDEDLISREDMVVTVSHL 545

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          +      S +  ++ D +     A+T   +L  S+ G  Y      
Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWR 605

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L  G     G+A+  ++ L   + I T               ++  +++G     +  + 
Sbjct: 606 LPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDF 665

Query: 632 IANTRKGKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
           +   R GK  +K+    +++  V   T  D V +     + + F +D +     R   GV
Sbjct: 666 VQVNRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGV 725

Query: 688 RLQSYKD-GGISDVICFKICEGLTW----------------------------------- 711
           R  +  D   I  +      E   W                                   
Sbjct: 726 RGINMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGE 785

Query: 712 ----------------IDSAGRSYNRSENDLLGWLGKRGGVGSL---VPKGFPRSGKFLS 752
                           +  + + Y +  +        RGG G       K     G+ ++
Sbjct: 786 LSEERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTE-IGELVA 844

Query: 753 S 753
           +
Sbjct: 845 A 845



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 79/295 (26%), Gaps = 73/295 (24%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
                 G+       +   ++ T    + E E        +  + RG +R  K       
Sbjct: 609 GTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDFVQV 668

Query: 539 ---DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                 A+  +E GD +         D +LL +  G+    P  ++    G        I
Sbjct: 669 NRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGI 728

Query: 595 DLNHNQD-----IVTAFVYDS--------------------------------------- 610
           ++          IV     +                                        
Sbjct: 729 NMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGELSE 788

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKV 656
                       +L VS KG        +   + R GK              ++     V
Sbjct: 789 ERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPV 848

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEG 708
             GD + +V +  +L+   ++ I   SR  KGV +  + KD  +  V      EG
Sbjct: 849 DEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEG 903


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 422/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES      ++ 
Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++ +++  + +ET F +    L  G VP+++ L  ++K ++ H+++V+ R
Sbjct: 306 EVKRDANANIVLNNLYKQTQLETTFGIINLALVDG-VPKILDLKELIKYYVKHQKDVVRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +    +R  I++GL+IA  NIDEII IIR+    D+ K +   +F LT+ Q  AI
Sbjct: 365 RTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++++E   L  + E   S+LN  ++  + I  EI E+KE ++    
Sbjct: 425 LDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT        +     + +IEKE + + +++ G+I+                +SA 
Sbjct: 482 --DRRTKIV---PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAG 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
           + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  LI L+ ++ 
Sbjct: 537 NTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSSDEK 596

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I         +   +L+  +  G     +        R G   + + + +++  + ++  
Sbjct: 597 ITDIMELSNLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLENGDRLVSIRQIDK 656

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSA 715
              + V  +    + F+   I  M R  +GVR      G    V+   I E     +   
Sbjct: 657 PCDIIVTTKKGMAIKFASSDIRSMGRNARGVRAIRL--GEDDKVVSMNIVEDEVYLVVVT 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +  +        RGG G    K   ++   +++
Sbjct: 715 ANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTKDVVAT 752



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 68/184 (36%), Gaps = 12/184 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  +  G I+   +          + A+  + GD L           I++ +  G A   
Sbjct: 613 VFQTENGKIKKTDAELFTNIQRNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKF 672

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++ S   +   ++  I L  +  +V+  + +    L+VV++ G       +      
Sbjct: 673 ASSDIRSMGRNARGVRA-IRLGEDDKVVSMNIVEDEVYLVVVTANGFGKKTSFNNFNNQN 731

Query: 636 RKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK      +   +++ +  +     D + +V     ++  S   I    R   GV+L+
Sbjct: 732 RGGKGVRCHKITEKTKDVVATLPANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLK 791

Query: 691 SYKD 694
           + ++
Sbjct: 792 NLEN 795



 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IRS+  ++  + A+   E D +           +++++ +G        N  +    G+ 
Sbjct: 677 IRSMGRNARGVRAIRLGEDDKVVSMNIVEDEVYLVVVTANGFGKKTSFNNFNNQNRGGKG 736

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           ++        +D+V     +    +++VS KG+   +   +I    R   G     + + 
Sbjct: 737 VRCHKITEKTKDVVATLPANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENT 796

Query: 648 EKMKLVV 654
           E   + V
Sbjct: 797 EDFIVSV 803


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 249/833 (29%), Positives = 403/833 (48%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR------------ 420
           + + +     R  IL GL IA  NIDEII II+  +     K  +++R            
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                         + TE Q  AIL +RL+ L  +E+ +++ +L NL+ E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAP 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 79/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
                 K  S    A+   E D L         + ILL +  GKA   P  +L    S  
Sbjct: 653 DLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 585 GHGEAIQLL---------------------------------IDLNHNQDI--------- 602
             G     L                                 +++   +           
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSL 772

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                  + +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/803 (30%), Positives = 397/803 (49%), Gaps = 62/803 (7%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGE-PT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK- 412
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+    
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++
Sbjct: 419 ISAREKLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINFYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++   FS             E+           +I  +   V+++  G++
Sbjct: 479 IFEIILEELNQIDGKFSSPRK--------TEILDLGGGLDDIDLIANDRSVVLLTEAGYL 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           + +           S   +    KE D +K+ +  +  D +LL S  G AY LPA  +  
Sbjct: 531 KRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G     L+ +   + I +    D       LL+++  G       S        
Sbjct: 591 SSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSN 650

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           G   + +   + +  V     GD V +  +    + F   I+++  + R  +GV+  + +
Sbjct: 651 GLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLR 710

Query: 694 DG-------------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +G                          + D +     +G   + ++     +       
Sbjct: 711 EGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQF 770

Query: 729 WLGKRGGVGSLVPKGFPRSGKFL 751
            L KR G+G    K   +  + +
Sbjct: 771 RLQKRAGMGLRAIKFRIKDDQLV 793



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 40/256 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +       +   ++++  G+I+        K  S  L A++ ++GD+L  
Sbjct: 606 IPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
              +   D +L+ S  G A  + L    L         ++ + +L    ++V+  V    
Sbjct: 666 VRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSM-NLREGDNLVSMDVLTSN 724

Query: 609 -----------------------DSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLK 643
                                       +L+ S+ G    V  ++     R G     +K
Sbjct: 725 LVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIK 784

Query: 644 VSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
              ++   + +KV   G+ + +V E   ++  + D+I + SR   GV+LQ   DG     
Sbjct: 785 FRIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSE 844

Query: 701 ICFKICEGLTWIDSAG 716
           +     E +   D  G
Sbjct: 845 VVLVPREQIEEKDQNG 860


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/752 (32%), Positives = 381/752 (50%), Gaps = 64/752 (8%)

Query: 6   ISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
              ++T  ++    V  +++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ +M+
Sbjct: 2   TDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMN 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KSAR+VG+V+GK HPHGD ++YD++VR+AQPF     LI GQGNFG++D
Sbjct: 62  EQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTE+RMT+ A  IL  +D+D VDF+D Y+  + EPVV PS+ PNLL NG  G
Sbjct: 122 NDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A LA IDNPEI +++LL+ + GPDFPTGG I+  R    ++
Sbjct: 182 IAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEII-GRSGARQA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              GRG   +R +  +EEV +    IV+T IPYQV K+ L+E+IAEL+  KRI  + D+R
Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R    ++++  ++  + +++ F +NM  L+    P+ M L  ++ 
Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALN-RGRPEQMGLREMVT 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P         
Sbjct: 360 AFVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVA 419

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                    ++  LT+ Q  AIL L L  L  L   +I  E   
Sbjct: 420 KDWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEARE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L         +L S ++    +  E+ +V+E F+       RRT   E+   D     + 
Sbjct: 480 LAGVIRGHLEILASRERVMAIVREELVQVREQFAVP-----RRT---EIVEGDADVEDED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +++ G+++                 S +  KE D++     A+T   +L 
Sbjct: 532 LIAREEMVITVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLF 591

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ GKAY L    L  G     G+A   L+ +   + I +               ++  
Sbjct: 592 FSSGGKAYKLKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSI 675
           +  GN    + S+ +   R GK  +K+   + +  V       + V +     + + F+ 
Sbjct: 652 TRSGNVRRNKLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFAT 711

Query: 676 DQIPEM-SR-GKGVRLQSYKDGGISDVICFKI 705
           +++     R   GVR     +G    VI   I
Sbjct: 712 EEVRVFAGRDSTGVRGIRLAEG--DSVISMAI 741



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVA 662
           +  +   +L VS++G        E     R G+  L         K+     V  GD + 
Sbjct: 799 MGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGSFPVDEGDEIL 858

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLTWIDSA 715
           +V +  +L+   + Q+    R  +GV + +   D  +  V       G   ++  
Sbjct: 859 LVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSVERLAEPAGDDEVEDG 913



 Score = 44.4 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 71/284 (25%), Gaps = 32/284 (11%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKE-----PITVVISNRGWIRSLKSHSV--- 538
              T  G+       +   +  T    + E E        +  +  G +R  K       
Sbjct: 609 GTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRNKLSDFVDI 668

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAIQLLI 594
                 A+   EGD++      +     +LL+T  G+        +    G        I
Sbjct: 669 RRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGRDSTGVRGI 728

Query: 595 DLNHNQDIVT--------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
            L     +++        A   +    L        A  +   E            +   
Sbjct: 729 RLAEGDSVISMAILRSAPATPAERAAYL----KHAKAMRIATGEAEEGEETAAPEEEDEA 784

Query: 646 ------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
                    +    +    + +  V         S  +     RG +G+  Q     G  
Sbjct: 785 NGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGK 844

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               F + EG   +  + +            L  R   G ++ +
Sbjct: 845 LAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFR 888


>gi|190891755|ref|YP_001978297.1| DNA gyrase, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 246/836 (29%), Positives = 397/836 (47%), Gaps = 119/836 (14%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +  
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRG 240

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +
Sbjct: 241 DREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAE 300

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++  
Sbjct: 301 VILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKA 359

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------------ 419
             R  +L GL IA  NIDE+I +IR    P+                             
Sbjct: 360 RERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHR 419

Query: 420 -----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    
Sbjct: 420 INEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-- 532
           +  E+  V++ F        RRT   E+         + +I +E + V +S+ G+I+   
Sbjct: 480 VKDELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVP 531

Query: 533 ------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
                  +      S +  ++ D +      +T   +L  S+ G  Y      L  G   
Sbjct: 532 LTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPT 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G+A+  ++ L   + I T               ++  +++G     + S+ +   R G
Sbjct: 592 SRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNG 651

Query: 639 KTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           K  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +
Sbjct: 652 KIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGE 711

Query: 695 GGISDVICFKI----------------------------CEGLTWI-------------- 712
           G    +I   I                             E +  +              
Sbjct: 712 G--DRIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDER 769

Query: 713 ------------DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                         + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 770 YEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGELVAA 824



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 80/287 (27%), Gaps = 73/287 (25%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
              T  G+       ++  ++ T    + E E        +  + RG +R  K       
Sbjct: 588 GTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQV 647

Query: 539 ---DLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                 A+  +E GD +         D +LL +  G+       ++    G        I
Sbjct: 648 NRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGI 707

Query: 595 DLNHNQDIVT-----------------------------------AFVYDS--------- 610
           +L     I++                                   A V +          
Sbjct: 708 NLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSD 767

Query: 611 ---------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVK 655
                       +L VS KG        +   + R GK      +       E +     
Sbjct: 768 ERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPV 827

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
             GD + +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 828 DDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 874


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/833 (29%), Positives = 399/833 (47%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIIRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIA+++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVVTNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVK 425

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEEFNPEELGVSLTAP 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 AIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 80/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
                 K  S    A+   E D L         + ILL +  GKA   P  +L    S  
Sbjct: 653 DLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 585 GHGEAIQLL---------------------------------IDLNHNQDI--------- 602
             G     L                                 +++   ++          
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEEFNPEELGVSL 772

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                  + +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ I    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +   I        G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 252/777 (32%), Positives = 390/777 (50%), Gaps = 65/777 (8%)

Query: 1   MGVDNISNSNTLV-----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHR 55
           M  D+  N+ T +       ++  +++   L+  YL YA+S I  RA+PD RDG KPVHR
Sbjct: 1   MTDDSYENAATPIVPGGGGSDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHR 60

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M ++ +    ++ K AR+VG+V+G+ HPHGD SVY +LVR+AQPF     L+ GQ
Sbjct: 61  RILYSMHDLNMTPERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQ 120

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG++DGD  A+ RYTEA+M   A  ++  +D+D VDF+  Y+E++ EPVV PS+ PNL
Sbjct: 121 GNFGSVDGDMPASMRYTEAKMAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNL 180

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG  GIAVGMAT+IP HN+ E+ +AALAL+D+P ++ + LL+ + GPDFPTGG I+  
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIM-G 239

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R +   + R GRG   VR R  VEE+ +    IVVTE+PYQV K  LIE+IAE++  KR+
Sbjct: 240 RTAPRNALRDGRGSVIVRGRASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRL 299

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R    D+++  ++  + M++ F +NM  L+    P+ M
Sbjct: 300 EGISDVRDESDRQGMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALN-HGRPEQM 358

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L+ +L  R EV+ RR  F +     R  +L GL +A  NIDE+I IIR+   P  
Sbjct: 359 GLRDLLQIFLDFREEVVVRRVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTE 418

Query: 416 VMVSRF-----------------------------SLTENQVDAILNLRLRSLRKLEEYQ 446
                                               LT+ Q  AIL L L  L  L    
Sbjct: 419 ARERLQAKPWPVGDMMALVELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDD 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  E + L    +   ++L+  K     I  ++ +VK+ F+       RRT   E    D
Sbjct: 479 IFGEANGLADTIQGHLTILSDRKNVLAIIRDDLIDVKDKFAVP-----RRTLIGE---GD 530

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAH 558
                + +I +E + V +++ G+++                 S +  K+ D++     A 
Sbjct: 531 GEMEDEDLIPREDMVVTVTHGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSAS 590

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC---- 612
           T   +L  +T+GKAY L    L  G  +  G+A   L+ +     I+             
Sbjct: 591 THTPVLFFATNGKAYKLKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWG 650

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RK 669
              ++  +S G+    + S+     R GK  +K+  +++M  V   T D   ++     +
Sbjct: 651 DYDIMFATSSGDVRRNKLSDFATVNRAGKIAMKLEGDDRMVGVGLCTADDDVLLTTALGR 710

Query: 670 LLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            + F  D +     R   GVR    +DG   +VI   I   +        +Y +  N
Sbjct: 711 AIRFKADDVRVFKGRDSTGVRGVRLQDG--DEVISMAILGRVDATPEERSAYVKHAN 765



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 21/191 (10%)

Query: 530 IRSLK-SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R  K   S  +  +  ++GD +          R+     +  AY   A  +       E
Sbjct: 719 VRVFKGRDSTGVRGVRLQDGDEVISMAI---LGRVDATPEERSAYVKHANAMRKALAGAE 775

Query: 589 AIQLLIDLNHNQDIVT---------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           A + +      +D V          A +  +   +L V+  G        E     R G+
Sbjct: 776 AEEDVAAPAEAEDEVADAALTVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQ 835

Query: 640 TF----LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                 L   +  ++     V   D + +V    +++   +DQ+  + R  +GV +  ++
Sbjct: 836 GLTAHGLGGRAGTRLAAAFPVEETDDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTI--FR 893

Query: 694 DGGISDVICFK 704
            G    V+  +
Sbjct: 894 TGKDEKVVSVE 904


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/754 (35%), Positives = 432/754 (57%), Gaps = 23/754 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S++  +  + V+  SL    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDTTQMSMDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE +L  + +  VDF   ++    EP+  P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + LID P  S+E LLE++  PD+PT   I+ S   + + Y 
Sbjct: 181 VGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLHKVYS 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       +V+T +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSIRMRAVYNVEDGD-----VVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D   LM+ +F  +++E+ + +NMNV+ +   PQV  L  +L 
Sbjct: 296 SDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDLRTMLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL +R   + RR  +R+  +D+R+ +L+GLLIA+LN+DE+I IIR E+ P+  +++RF 
Sbjct: 356 EWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVALMARFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL  RLR L +LEE +I+ E + LL E+E +   L S  Q    +  EI   
Sbjct: 416 LSEAQADYILETRLRQLARLEEMKIRGEQEELLRERETLAGYLGSETQLKGLVREEIMAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + +        RR+   E +   KA  +  ++  EP+TVV+S +GW+R+ K   VD S 
Sbjct: 476 ADYYGD-----DRRSPLVERAE-AKALSESELMPSEPVTVVLSEKGWVRAGKGSDVDGST 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ K +    +    + + + G++++L A  L S R  GE +   +        
Sbjct: 530 LSYKAGDTFKTSASGRSNQFAVFIDSTGRSFSLAAHTLASARTQGEPLSGKLTGQPGASY 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
               + D     ++ S  G  F+V+  ++ A  + GK  + +S   K+ + + V+     
Sbjct: 590 EWVVMPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADEQ 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEG-LTWID 713
            +  +    +LL+F   ++P++ +GKG ++ S                  + EG    I 
Sbjct: 650 WIVALTSEGRLLMFKASELPQLGKGKGNKIISVPSDKAQAREELMTQLLVLDEGKSVVIT 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           S  R+      DL  +   RG  GS++P+G+ + 
Sbjct: 710 SGKRTMTLKPGDLESYKSMRGKRGSMLPRGYQKV 743


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 448/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++     +     D + 
Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMSLPKGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/758 (33%), Positives = 421/758 (55%), Gaps = 31/758 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  V L   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M  +GLD     +K
Sbjct: 7   QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GK HPHGD ++YD+LVRLAQ F  RYPL +GQGNFG+IDGD AAA RYTE 
Sbjct: 67  SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A+ +L+ +++D VDF   ++EE+ EP V PS+FPNLL NG++GIAVGMAT++  H
Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ +  +A +A ++NPEIS+++L + I GPDFPTG  I+  +  I ++Y+ GRG  ++RA
Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E   +    I+VTEIPYQV K+ LI+KIAE +  K++  + DIRDES      ++ 
Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  + ++++ +++  + +ET F +    L  G VP+++ L  ++K ++ H+++V+ R
Sbjct: 306 EVKRDSNANIVLNNLYKQTQLETTFGIINLALVDG-VPKILDLKELIKYYVKHQKDVVRR 364

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +    +R  I++GL+IA  NIDEII IIR+    D+ K +   +F LT+ Q  AI
Sbjct: 365 RTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQAI 424

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++++E   L  + E   S+LN  ++  + I  EI E+KE ++    
Sbjct: 425 LDMQLKRLSGLEIEKLQAEDKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYAD--- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT        +     + +IEKE + + +++ G+I+                +SA 
Sbjct: 482 --DRRTKIV---PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGISAG 536

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
           + KE D ++  L  +T + +L  +  G+ Y+L    +   S +  G+AI  LI L+ ++ 
Sbjct: 537 NTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSSDEK 596

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I         +   +L+  +  G     +        R G   + +   +++  + ++  
Sbjct: 597 ITDIMELSNLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLEDGDRLVSIRQIDK 656

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSA 715
              + V  +    + F+   I  M R  +GVR      G    V+   I E     +   
Sbjct: 657 PCDIIVTTKKGMAIKFASSDIRSMGRNARGVRAIRL--GEDDKVVSMNIVEDEVYLVVVT 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +  +        RGG G    K   ++   +++
Sbjct: 715 ANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTKDVVAT 752



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 12/184 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  +  G I+   +          + A+  ++GD L           I++ +  G A   
Sbjct: 613 VFQTENGKIKKTDAELFTNIQRNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKF 672

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++ S   +   ++  I L  +  +V+  + +    L+VV++ G       +      
Sbjct: 673 ASSDIRSMGRNARGVRA-IRLGEDDKVVSMNIVEDEVYLVVVTANGFGKKTSFNNFNNQN 731

Query: 636 RKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK      +   +++ +  +     D + +V     ++  S   I    R   GV+L+
Sbjct: 732 RGGKGVRCHKITEKTKDVVATLPANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLK 791

Query: 691 SYKD 694
           + ++
Sbjct: 792 NLEN 795



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 459 EKIDSL--LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           EKI  +  L++  ++   +        +          +R     +S  D   L      
Sbjct: 595 EKITDIMELSNLNEKSQLVFQTENGKIKKTDAELFTNIQRNGIIAISLEDGDRLVSIRQI 654

Query: 517 KEPITVVISNRGW---------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +P  ++++ +           IRS+  ++  + A+   E D +           +++++
Sbjct: 655 DKPCDIIVTTKKGMAIKFASSDIRSMGRNARGVRAIRLGEDDKVVSMNIVEDEVYLVVVT 714

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
            +G        N  +    G+ ++        +D+V     +    +++VS KG+   + 
Sbjct: 715 ANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTKDVVATLPANLDDDIMMVSLKGDMIRIS 774

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
             +I    R      K+ + E        T D++  V +
Sbjct: 775 TRDISTTGRNTLGV-KLKNLEN-------TEDYIVSVTK 805


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 248/857 (28%), Positives = 380/857 (44%), Gaps = 114/857 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D+ +        ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +
Sbjct: 1   MSDDHNTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G      + KSAR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQGNFG+
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE RM   A  +L  +D+D VDF D Y+ ++ EP V PS+ PNLL NG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A L LID P+++ ++LL+ + GPDFPTGG I+  R    
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEII-GRAGPR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++   GRG   +R    VEE+  G   I+VTEIPYQV K+ L+E IAEL+  K+I  + D
Sbjct: 240 QALLTGRGSVIMRGVASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R    ++++  ++  + +++ F +NM  L+    P+ M L  +
Sbjct: 300 IRDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPEQMGLHQL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           ++ ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P       
Sbjct: 359 IQLFVDFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERL 418

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          LT+ Q  AIL L L  L  L   +I +E 
Sbjct: 419 VAKSWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEA 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L         LL+        +  E+ EV+E F+       RR   C++   D     
Sbjct: 479 AALADAIRGYLELLSDRANIMAVVREELVEVREKFAIP-----RR---CQIVDGDADMED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + ++  G+++                 S +  K  D++     A T   +
Sbjct: 531 EDLIVREDMVITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPL 590

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  ++ GK Y +    L  G     G+A   L+ +   + I +               ++
Sbjct: 591 LFFTSGGKVYKMKVWRLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
             +  G+    + S+ +   R GK  +K+   + +  V     D  V +     + + FS
Sbjct: 651 FATRSGSVRRNKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFS 710

Query: 675 IDQIPEM-SR-GKGVRLQSY---------------------------------------- 692
           +D++    SR   GVR                                            
Sbjct: 711 VDEVRVFASRDSTGVRGVKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEE 770

Query: 693 -------KDGGISDV---------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                   D G  +V         I          +  +   + +  +        RGG 
Sbjct: 771 GEDTATAADDGDEEVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQ 830

Query: 737 GSLVPKGFPRSGKFLSS 753
           G        R G+ + S
Sbjct: 831 GLAAQDLSKRGGRLVGS 847



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 77/291 (26%), Gaps = 75/291 (25%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
             +   G+       +   +  T   A+ E E        +  +  G +R  K       
Sbjct: 610 GVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSDFVDV 669

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQL 592
                 A+   EGD +      +    +LL +  G+             S    G     
Sbjct: 670 RRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGVRGVK 729

Query: 593 LIDLN-----------------------------------HNQDIVTAF----------- 606
           L+D +                                     +D  TA            
Sbjct: 730 LLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGDEEVGEAS 789

Query: 607 --------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVK 655
                   +  +   LL VSS+G        +     R G+            ++     
Sbjct: 790 LTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRGGRLVGSFP 849

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           +   D + +V +  +L+   + QI   +R  +GV +  ++      V+  +
Sbjct: 850 IDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTI--FRTAQDEHVVSVE 898


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 444/750 (59%), Gaps = 24/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN   +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSNE-IINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELG 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L+  A + K+AR VG+V+GK HPHGD + Y ++V +AQ F  RYPLI GQGN+G++  D 
Sbjct: 60  LNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSL-EDD 118

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEAR+T++A ++L  +D+  VDF+  ++    EPV FPS+ P++L NG++GIAV
Sbjct: 119 AAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAV 178

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP HN+ EI EA++ L++NP+ ++  LL  + GPD+PT   I+  +  I + Y  
Sbjct: 179 GMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQ 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  R+RA W  E+       IV+  +P+Q   S++I +IA+ +  K++P+++DIRDES
Sbjct: 239 GRGSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDES 293

Query: 306 AED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             +  +RIV+ P++  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL E
Sbjct: 294 DHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHDILTE 353

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           WL+ RR  + RR + ++  I  R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L
Sbjct: 354 WLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNL 413

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q +AILNLRLR L KLEE+++++E + L +E++++  +L S ++    I  EI+   
Sbjct: 414 SDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADA 473

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F+       RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L
Sbjct: 474 KTFADP-----RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGL 527

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            ++ GD         +   ++ L + G+AY L   +L S R  GE +   I L     + 
Sbjct: 528 SYRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAIVE 587

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660
              +     K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    
Sbjct: 588 QVLMAAPETKVLMASDSGYGFICTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVS 647

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DS 714
           +  +    ++L+F I ++P +S+GKG ++ +      K+          I    + +  S
Sbjct: 648 LVAMSSAGRMLVFPIAELPILSKGKGNKIINISAQAAKERRELLARLLLIKANQSLVFVS 707

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R      +D+  + G+R   GS + +G 
Sbjct: 708 GKRKITLKPSDIDNYRGERARKGSQLVRGL 737


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/786 (31%), Positives = 396/786 (50%), Gaps = 64/786 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPER 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ D VDF D ++    EP+V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE++ ++L++ I GPDFPTGG I+  R  I ++Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQIL-GRSGIHDAYLSGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++T++PYQ  K+ LIE+IA+L+  KRI  + DIRDES
Sbjct: 241 ITMRGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +I+  + ++  F  NM  L  G  PQ++ +   L+ +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+D +I +IR        K  +V +F 
Sbjct: 360 EFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQFG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DAIL ++LR L  LE  +I +E + L  +   +  +L   ++    I  E+ ++
Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEEELAQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I +       RRT   E+   D   +   +I  E   ++++ +G+I+ +   + +   
Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592
                  A   KE D ++  L     D++L  S  G  Y + A  +   S    G  I  
Sbjct: 532 RATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIQAASRTARGIPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++ I +      +     L++++  G       S        G   + +   ++
Sbjct: 592 MLPIPKDEKITSIVAVSEFSDDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGI---SDVIC 702
           ++ V      D + +   N   + F  D  Q+  + R  +GV+    K G      D++ 
Sbjct: 652 LRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDILT 711

Query: 703 FKICEGLTWIDSAG--------------------------RSYNRSENDLLGWLGKRGGV 736
            ++  G+ + +                               Y +        L KR G+
Sbjct: 712 AQVTAGMAYTEEDEEILDNENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGM 771

Query: 737 GSLVPK 742
           G    K
Sbjct: 772 GVRAIK 777



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 42/249 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +  +    +   V+++  G+I+           +  L A+   +GD L+ 
Sbjct: 595 IPKDEKITSIVAVSEFSDDVFLVMLTRNGYIKKTALSAFSNIRTNGLIAISLGDGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGH---------------------GEA 589
                  D I+L +++G +    A N      GR                        + 
Sbjct: 655 VRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVKAMKLKKGDELISMDILTAQV 714

Query: 590 IQLLIDLNHNQDIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKG--KT 640
              +     +++I+     +       +   +L +++ G    V  S+     R G    
Sbjct: 715 TAGMAYTEEDEEILDNENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVR 774

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
            +K  S+      ++V    D + +V     ++  ++D I   SR   GVR+Q       
Sbjct: 775 AIKFKSDSDCLASLRVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDA 834

Query: 698 SDVICFKIC 706
              +     
Sbjct: 835 IAAVALVPP 843


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 250/833 (30%), Positives = 399/833 (47%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVVEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILPLVK 425

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTLTAD 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 78/289 (26%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L     +++  V                                        
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 746


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 260/773 (33%), Positives = 397/773 (51%), Gaps = 66/773 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E+ V  +++   +++ YL YA+S I  RA+PD+RDG KPVHRRI+ +MSE G  F  A+K
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +VA  +L  +D+D V+F++ Y+  + EP+V P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +A+I++P I  E LLE + GPDFPTG +I+  R         GRG   +R
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALII-GRAGSRSGLMTGRGSVIMR 278

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE+  G   +V TEIPYQV K+ +IEKIAEL+  KRI  + D+RDES  D   V+
Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R   P++++  +F  + ++T F +NM  L+    P+++ L  IL+ ++  R EV+ 
Sbjct: 339 VEVKRDASPEVVLNQLFRYTQLQTSFGMNMLALN-SGRPELLSLKAILQAFIIFREEVVA 397

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           RR+ F +     R  +L GL +A  NIDE+I IIR+   P                    
Sbjct: 398 RRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSL 457

Query: 419 --------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                             L+E Q  AIL+LRL+ L  L   +I  E   L         +
Sbjct: 458 INLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDI 517

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S  +    I  E+R V+E F+       RR+ F E    +     +A IEKE + V+ 
Sbjct: 518 LSSRPRVMEIITEELRVVREEFAIP-----RRSQFIEA---ELDMDDEAFIEKEDMVVMF 569

Query: 525 SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           ++ G+         R+        S +  KE D++     A+T   +L  S+ G  Y   
Sbjct: 570 THGGYAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTK 629

Query: 577 AGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
              +  G     G+A+  L+ L+  + I +               +L  +  G     + 
Sbjct: 630 VWRMPLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKL 689

Query: 629 SEIIANTRKGKTFLKVSS------EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE- 680
           S+     R GK  +K+        ++ +  V   +  D V +     + + F ++ +   
Sbjct: 690 SDFTQVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVF 749

Query: 681 MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             R   GVR     +G   +VI   +   +       R+Y +  + +   LG+
Sbjct: 750 TGRTSTGVRGIRLANG--DEVISMLVLRHMDITSPEARAYLKHASAMRRALGE 800



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 21/198 (10%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQ 591
             S  +  +    GD +   L       + + S + +AY   A  +    G  E    I 
Sbjct: 752 RTSTGVRGIRLANGDEVISMLVLR---HMDITSPEARAYLKHASAMRRALGEEEGDTEID 808

Query: 592 LLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL- 642
           ++ + + + +   A +              LL ++  G        +     R GK  + 
Sbjct: 809 VVSEPDADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIA 868

Query: 643 -KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K+++  ++     +  GD + +V +  +L+     QI    R   GV++   +  G   
Sbjct: 869 HKLNAGRRLAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKV--LRTSGEER 926

Query: 700 VICFK-ICEGLTWIDSAG 716
           V+  + + E  + +D   
Sbjct: 927 VVSVERLAEQESDVDENE 944


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 250/833 (30%), Positives = 399/833 (47%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 9   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 69  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 129 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 189 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 247

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RLIEKIAE++  KRI  + D+RDES ++   +   
Sbjct: 248 AEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 307

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 308 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 366

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---------------- 419
           + + +     R  IL GL IA  NIDEII II+  + P                      
Sbjct: 367 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILPLVK 426

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       + + TE Q  AIL +RL+ L  +E+ +++ +L NL  E  +  ++L S
Sbjct: 427 LVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGS 486

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 487 RTRLLEILKAELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 538

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 539 GYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 598

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +    
Sbjct: 599 LPLSNPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAF 658

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F+++ +    SR   GVR
Sbjct: 659 KKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVR 718

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 719 GMKL--AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSLTAP 776

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 777 AILEMAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 829



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 76/289 (26%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 594 LKLYKLPLSNPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRS 653

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA      +L   +   
Sbjct: 654 DLLAFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRT 713

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------DSTCKL------------------------- 614
                 + L     +++  V         D    L                         
Sbjct: 714 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPEELGVSL 773

Query: 615 ---------------LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                          L V+  G              R G   + +   +K  LVV V   
Sbjct: 774 TAPAILEMAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 833

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 834 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 882



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIV 626
           GK  +     +    G G     +I+++ N     +V         +L+++++ G     
Sbjct: 797 GKRSSAYGYRITDRGGSG-----IINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRC 851

Query: 627 EESE--IIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +     I      G    K+   EK+  V  + 
Sbjct: 852 KLESVRITGRNTSGVILFKLDDGEKVVSVSLIA 884


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 748


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/772 (33%), Positives = 385/772 (49%), Gaps = 60/772 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + +   S       +  V++   L+  YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MTDTPASGLPTPHGISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      + KSA IVG+V+G+ HPHGD ++YD+LVR+AQPF  R  L+ GQGNFG++D
Sbjct: 61  EEGRTHDKKYVKSANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE+RMT+ AE ++  +D++ VDF D Y+    EP V PS+ PNLL NG  G
Sbjct: 121 GDPPAAMRYTESRMTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ EI EA LA++D+PE+S E LL  + GPDFPTGG I+  R    ++
Sbjct: 181 IAVGMATNIPPHNLGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEIL-GRSGARQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              GRG   +R +  VE + +    I+VTE+PYQV K+ LIE IAE++  KRI  + DIR
Sbjct: 240 LLTGRGSVIMRGKASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIR 299

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    R    D+++  ++  S ++T F +NM  L+    PQ M L  +L+
Sbjct: 300 DESDRQGMRMVIELKRDASGDVILNQLYRYSALQTSFGVNMLALN-HGRPQQMGLRKLLE 358

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            +L  R EV+ RR+ F +     R  +L GL IA  NIDEII IIR+   P         
Sbjct: 359 IFLDFREEVVVRRTRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTA 418

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LTE Q  AIL L L  L  L   +I  E   
Sbjct: 419 KNWPAGDMSPLIELIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEART 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L A   +  ++L+S ++    +  E+ EVK ++++      RR+   +          + 
Sbjct: 479 LAASIAEYLAILSSRERILGIVREELEEVKALYAEP-----RRSLIVDGEA---DIEDED 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + V +++ G+++                 S +  K+ D++     A T   +L 
Sbjct: 531 LIPREDMVVTVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLF 590

Query: 566 LSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ GKAY L    L  G     G+A   L+ L+ ++ +                 ++  
Sbjct: 591 FSSTGKAYKLKVWRLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           +  G+    + S+ +   R GK  +K+   + +  V   T D  V +   + + + F++D
Sbjct: 651 TRSGDVRRNKLSDFVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVD 710

Query: 677 QIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           ++     R   GVR      G    VI   I   +    +   +Y +    L
Sbjct: 711 EVRVFKGRDSTGVRGVRL--GEDDTVISMAILRRVEATPAERAAYLKHAASL 760



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVG 665
           +   +L ++  G        +     R G+  + +       K+     V   D + +V 
Sbjct: 799 AEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRGGKLVASFPVEDTDQLLLVT 858

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  +L+   + QI    R  +GV +  ++  G   V   ++ E
Sbjct: 859 DGGQLIRTPVSQIRVAGRNTQGVTI--FRTSGEKVVSVERLAE 899


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/827 (28%), Positives = 405/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGI +  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGI-IHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F              ++ 
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERK--------TDIV 530

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+ ++         K      SA   KE D ++  L
Sbjct: 531 DARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +   S    G  +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS--------------------YKDGGISDVICFKICE 707
           K + F    I  MSR  KGVR                         D  +S V+   +  
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 33/229 (14%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
            + ++       +  G ++ +            L A+   EGD+L           I+L 
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLF 706

Query: 567 STDGKAYTLPAGNLLS----GRG-HGEAIQLLIDLNHNQ----------------DIVTA 605
           S +GKA      ++ +     +G  G  + LL   +  +                 +V+ 
Sbjct: 707 SNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSL 766

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HV 661
            V     ++L     G        +     R GK  + + + E+   +   + VTG+  V
Sbjct: 767 VVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEEDV 826

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFKICEG 708
            ++ +   L+   + QI    R  +GV+L    D  +   + C +  + 
Sbjct: 827 ILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDD 875


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/827 (28%), Positives = 405/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGI +  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGI-IHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F              ++ 
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERK--------TDIV 530

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+ ++         K      SA   KE D ++  L
Sbjct: 531 DARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +   S    G  +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS--------------------YKDGGISDVICFKICE 707
           K + F    I  MSR  KGVR                         D  +S V+   +  
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 32/217 (14%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
            + ++       +  G ++ +            L A+   EGD+L           I+L 
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLF 706

Query: 567 STDGKAYTLPAGNLLS----GRG-HGEAIQLLIDLNHNQ----------------DIVTA 605
           S +GKA      ++ +     +G  G  + LL   +  +                 +V+ 
Sbjct: 707 SNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSL 766

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HV 661
            V     ++L     G        +     R GK  + + + E+   +   + VTG+  V
Sbjct: 767 VVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEEDV 826

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            ++ +   L+   + QI    R  +GV+L    D  +
Sbjct: 827 ILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEV 863


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 394/775 (50%), Gaps = 60/775 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +    +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ +  L
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI+NPE+   +L+  I GPDFPTGG I+  R  I E Y  GRG   +R    +E +   
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQIL-GRSGIREMYTTGRGSVTMRGVASIETIEAK 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R  
Sbjct: 240 GRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R E + RR+ + +
Sbjct: 300 YPQVVLNNLFKLTPLQSNFSAYMLALVKGE-PVLLTLRKMLEVFLDFRVETIERRTRYLL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R  IL GLLIA  N+D IIA+IR+       +  ++ +F L+E Q DAIL ++LR
Sbjct: 359 RKAEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQFGLSEIQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++LLA+      +L   ++    I  E+  ++  +        RRT
Sbjct: 419 RLTALEADKIRLEHEDLLAKITDYKDILARKERVLALITEELGVLRSRYDSP-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--------EGD 549
              +V    +      +I  E   V+++  G+++ +     + ++   +          +
Sbjct: 474 EILDVEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEE 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
           ++++ +  +  D +LL S  G  YT+PA  +   S    G  I  L+ +   + I +   
Sbjct: 531 AVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIVQLLPIPREEQITSLLA 590

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              +     L++++S G       S        G   + +   + +  V     GD + +
Sbjct: 591 VSEFAEDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSLLI 650

Query: 664 VGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVICFKIC----------- 706
              N   + F +   ++  + R  +GVR  + + G      DV+  ++            
Sbjct: 651 GSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVESSSAAAD 710

Query: 707 ----------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                     EG   + ++     +        L KR G+G    K F R G  L
Sbjct: 711 EEDTEEVPPSEGPWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMK-FRRDGDVL 764



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 38/245 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +   ++ + V++++ G+I+  +  +        L A+  +EGD+L  
Sbjct: 579 IPREEQITSLLAVSEFAEDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLEEGDALTW 638

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLLIDLNH----------- 598
              A   D +L+ S +G    + L    L  L     G     L   +            
Sbjct: 639 VRLAQPGDSLLIGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVEL 698

Query: 599 -----------NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVS 645
                      +++            +LV S+ G    V   +     R G     +K  
Sbjct: 699 ADRVESSSAAADEEDTEEVPPSEGPWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFR 758

Query: 646 SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVI 701
            +  + + +KV   G+ + +V E   ++    D +P+ SR   GVRLQ    G  +S+V+
Sbjct: 759 RDGDVLVGLKVLGAGEELLLVSEKGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVV 818

Query: 702 CFKIC 706
                
Sbjct: 819 LVPPA 823


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 239/827 (28%), Positives = 406/827 (49%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGI +  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGI-IHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F              ++ 
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERK--------TDIV 530

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+ ++         K      SA   KE D ++  L
Sbjct: 531 DARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +   S    G  +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS------------YKDGG--------ISDVICFKICE 707
           K + F    I  MSR  KGVR                 + G        +S V+   +  
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATIDEEELLDEDGDEISDDFAVSRVVSLVVAP 770

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 33/229 (14%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
            + ++       +  G ++ +            L A+   EGD+L           I+L 
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLF 706

Query: 567 STDGKAYTLPAGNLLS----GRG-HGEAIQLLIDLNHNQ----------------DIVTA 605
           S +GKA      ++ +     +G  G  + LL  ++  +                 +V+ 
Sbjct: 707 SNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATIDEEELLDEDGDEISDDFAVSRVVSL 766

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HV 661
            V     ++L     G        +     R GK  + + + E+   +   + VTG+  V
Sbjct: 767 VVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEEDV 826

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFKICEG 708
            ++ +   L+   + QI    R  +GV+L    D  +   + C +  + 
Sbjct: 827 ILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDD 875


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/782 (31%), Positives = 380/782 (48%), Gaps = 60/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++ +        ++  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +
Sbjct: 1   MSDEHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E G      + KSAR+VG+V+GK HPHGD S+Y +LVR+ QPF     LI GQGNFG+
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTE RM   A  +L  +D+D VDF D Y+ ++ EP V P++ PNLL NG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT+IP HN+ E+ +A L LID PEI+ ++LL+ + GPDFPTGG I+  R    
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEII-GRAGPR 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++   GRG   +R    VE++  G   I+VTEIPYQV K+ L+E IAEL+  K++  + D
Sbjct: 240 QALLTGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIAD 299

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES  D   ++    R    ++++  ++  + +++ F +NM  L+    P+ M L  +
Sbjct: 300 IRDESNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPEQMGLHKL 358

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
           L+ ++  R EV+ RR+ F +     R  +L GL IA  NIDE I IIR+   P       
Sbjct: 359 LQLFVEFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERL 418

Query: 419 ---------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                          LT+ Q  AIL L L  L  L   +I +E 
Sbjct: 419 VAKSWPAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEA 478

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + L         LL+        +  E+ EV+E F+       RR   C++   D     
Sbjct: 479 ETLADAIRGYLELLSDRANIMAVVREELVEVREKFAVP-----RR---CQIVDGDADMED 530

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + ++  G+++                 S +  K  D++     A T   +
Sbjct: 531 EDLIVREDMVITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPL 590

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLL 615
           L  ++ GK Y +    L  G     G+A   L+ +   + I +               ++
Sbjct: 591 LFFTSGGKVYKMKVWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVM 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
             +  G+    + S+ +   R GK  +K+   + +  V     D  V +     + + FS
Sbjct: 651 FATRSGSVRRNKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFS 710

Query: 675 IDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           +D++    SR   GVR     +G   +VI   +   +    +   +Y + +  +L   G+
Sbjct: 711 VDEVRVFASRDSTGVRGVRLAEG--DEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGE 768

Query: 733 RG 734
            G
Sbjct: 769 EG 770



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 73/248 (29%), Gaps = 36/248 (14%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +   S   D+ R      ++   D           + + +  +    IR           
Sbjct: 660 RNKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFAS 719

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE------ 588
             S  +  +   EGD +       + D     +   +A  L        R  GE      
Sbjct: 720 RDSTGVRGVRLAEGDEVISMAVLRSVD----ATPAERAAYLK-HQRAMLRAAGEEGDDAP 774

Query: 589 -------AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                         L+  + I  A +  +   LL VSS+G        +     R G+  
Sbjct: 775 VAAEEGEEDADETTLSP-ERI--AELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGL 831

Query: 642 LKVSS---EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                     ++     +   D + +V +  +L+   + QI   +R  +GV +  ++   
Sbjct: 832 AAQDLSKRGGRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTI--FRTAQ 889

Query: 697 ISDVICFK 704
              V+  +
Sbjct: 890 DEHVVSVE 897


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/758 (36%), Positives = 446/758 (58%), Gaps = 27/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+   +  + V+ VSL+   E+ YL Y++  I +RA+P++ DG KPV RRI++AMSE+G
Sbjct: 1   MSDQFHIAADGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L  GA +KKSAR VG+VIGK HPHGD SVY+++V +AQ F  RYPL+ GQGN+G + D  
Sbjct: 61  LKAGAKYKKSARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++   ++L+L  + +  V ++  ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A + L++ P  +I++L E+I GPD+PT   I+   + +   Y+
Sbjct: 181 VGMATDIPPHNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA W  E        +VVT +P+QV  S+++E+IA+ I AK++P++ D+RDE
Sbjct: 241 TGKGSIRMRAVWQKEGSD-----VVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK+  +D + +M  +F  +D+E  + +N+N++ +   P+V  LD IL 
Sbjct: 296 SDHENPTRLVIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILT 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR   R+Q ++ R+  L  L+I YLN+DE+I IIR E+ PKPV++ RF 
Sbjct: 356 EWLQFRSDTVRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPVLIERFD 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + I+  +LR L +LEE +I+SE ++L  EKE ++ +L S ++    +  E+ EV
Sbjct: 416 LVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLEQILASARRLKTLVKKELLEV 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        KA  ++ ++  EP+TVV+S +GW+RS K H +D  +
Sbjct: 476 AEEY------GDDRRSPIASRGEAKAFTEEELMTTEPVTVVLSEKGWVRSAKGHDIDPQS 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS  +A    +   +++L + GKAYT+ A +L S RG GE +   I+       
Sbjct: 530 LSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSLPSARGQGEPLTGRINSPSGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +  +    L+ S  G  F+V+ S++    + GK  L +    ++     V G    
Sbjct: 590 EGLMMGRADDLYLLASDAGYGFVVKFSDLQTKNKAGKAALSLPKGARVLQPGMVAGTETE 649

Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLT 710
              VA V    ++LIF + ++P MSRGKG ++          ++  +  V      + L 
Sbjct: 650 LRYVAAVSNEGRMLIFPLTELPTMSRGKGNKIIGIPPSRLQAREEFVVAVAIINERDTLR 709

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + +  R  N   ++L  ++G+RG  G  +P+GF +  
Sbjct: 710 -VHAGKRYVNMKFSELDHYMGERGRRGHKLPRGFQKVD 746


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 229/768 (29%), Positives = 403/768 (52%), Gaps = 43/768 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +   V +   ++  ++ YA++ I +RA+PD+RDG KPVHRRI++AM + GL       KS
Sbjct: 3   STLPVDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ K HPHGD  +YD++VRL Q +  RYP++  QGNFG+IDGD AAA RYTEAR
Sbjct: 63  AAVVGEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT++AE +L  ++++ VD +  Y+E  +EP V PS  PNLL NG++GIAVGMAT+IP HN
Sbjct: 123 MTKLAEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIE---------KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           + EI    +++ID P  + E         +L+ ++ GPDFPTGG    SR  I ++Y  G
Sbjct: 183 LTEIVNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGG--RISRSGIRDAYATG 240

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +VR +  ++E   G   I+++EIPYQV K+ LI+ I+ +  A +IP +  +RDES 
Sbjct: 241 HAGLKVRGKARIDE-KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESD 299

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R   P L++  ++  + ++T F +    +  G  P+V+PL   ++ +L
Sbjct: 300 RKEPVRIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNGE-PKVLPLLDTMRYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            HR +V+ RR+++ ++    R  IL+GLL A  +IDE+IA+IR      + +  +++RF 
Sbjct: 359 EHRADVVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTRFQ 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q  AIL++RL+ L  LE  +++ E + L+   +++ ++L   K  W +I  E++++
Sbjct: 419 LTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDRLKAILGDEKLLWREIKKELKDI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           ++ +        RR+T  ++        ++ +I  E + + ++  G+++  K  +     
Sbjct: 479 RDRYGDE-----RRSTITQLEE---DISKEDLIAVEDMVITMTRAGYLKRTKLDAYRAQS 530

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                      +E D         T D +L  +  G+ +     +L        G  I+ 
Sbjct: 531 RGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLPEAGRDAKGTHIKN 590

Query: 593 LID-LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+  L  N+ + +      +D     +  + +G     +  +    T  G   L +  ++
Sbjct: 591 LLPGLRENESVASVLAIKDFDEAGSFVFATKRGMIKKTQIRDYGNITSAGLIALNLQDDD 650

Query: 649 KMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFK 704
            +  V ++  GDH+ +   + + + F  +++ +  R   GV     +DG   +S  +   
Sbjct: 651 GLIGVGIQRDGDHIVLATSDGQAMRFGANEVRDTGRATQGVIGIRLRDGDHVVSMAVVPG 710

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             E    +  +     +           RGG+G +      ++GK ++
Sbjct: 711 DDEDSELLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTEKTGKLVA 758



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 19/191 (9%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + RG I+  +           L AL+ ++ D L         D I+L ++DG+A   
Sbjct: 617 VFATKRGMIKKTQIRDYGNITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRF 676

Query: 576 PAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESE 630
            A  +   R  G A Q +I   L     +V+  V    D   +LL +S  G       S+
Sbjct: 677 GANEV---RDTGRATQGVIGIRLRDGDHVVSMAVVPGDDEDSELLAISECGLGKRTPVSD 733

Query: 631 IIANTRKGKTFLKVSSEEK---MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
             +  R G   + +   EK   +  + +V GD  + V+ +   ++   ++++    R  +
Sbjct: 734 YPSKGRGGLGVITLDVTEKTGKLVALARVAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQ 793

Query: 686 GVRLQSYKDGG 696
           GV++ +  DG 
Sbjct: 794 GVKIINLGDGD 804



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI---LLLSTDGKAYTLPAGNLLSGRGH 586
           +R     +  +  +  ++GD +         D     L +S  G     P  +  S    
Sbjct: 681 VRDTGRATQGVIGIRLRDGDHVVSMAVVPGDDEDSELLAISECGLGKRTPVSDYPSKGRG 740

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  +  L        +V         +L+V++ KG        E+    R   G   + +
Sbjct: 741 GLGVITLDVTEKTGKLVALARVAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINL 800

Query: 645 SSEEKMKLVVKVTGDHVA 662
              + +     +  +   
Sbjct: 801 GDGDCVISAFPIRKEDEL 818


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 252/733 (34%), Positives = 392/733 (53%), Gaps = 61/733 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL+YA+S I  RA+PD+RDG KPVHRRI++A  E G  +   + KSAR V +V+GK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ +  R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF++TY+  D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +IDNP I +  L+E I GPDFPTGGI++  R  I  +Y  GRG   +R +  +E+ G   
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGNDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + DIRDES      V+    R    D++
Sbjct: 240 ESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+++ L  +LK +++ R EV+ RR+ F ++    
Sbjct: 300 LNQLYRFTPLQTSFGANMVALN-GGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------------- 417
           R  +L GL IA  NIDE+I +IR    P+                               
Sbjct: 359 RAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRIN 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL+ L  L   +I  EL+++ AE      +L+S  +    + 
Sbjct: 419 ADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  V++ F        RRT   E++        + +I++E + V +S+ G+I+     
Sbjct: 479 DELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                +      S +  KE D +     A+T   +L  S+ G  Y      L  G  +  
Sbjct: 531 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     + S+ +   R GK 
Sbjct: 591 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 650

Query: 641 FLKV-SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKDGG 696
            +K+    +++  V      D V +   + + + FS+  +    SR   GVR  +  +  
Sbjct: 651 AMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAE-- 708

Query: 697 ISDVICFKICEGL 709
              +I   + E +
Sbjct: 709 TDRIISMSVIENV 721



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 28/217 (12%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
              D+    +   + + + +  S+   IR            +SV +  +   E D +   
Sbjct: 656 EEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISM 715

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG-----RGHGEAIQLLIDLNHNQDIVT----A 605
                 D     S   +A  L              G  E I L  +    +  ++     
Sbjct: 716 SVIENVD----ASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYE 771

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV----TGD 659
           F+      +L V+  G        +     R  KG     VS   ++  +V        D
Sbjct: 772 FLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDD 831

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695
            + +V +   ++   ++ I   SR  KGV + +  +G
Sbjct: 832 QIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEG 868


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/833 (30%), Positives = 400/833 (48%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR------------ 420
           + + +     R  IL GL IA  NIDEII II+  +     K  +++R            
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                         S TE Q  AIL +RL+ L  +E+ + + +L NL  E  +  ++L S
Sbjct: 426 LVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I+ E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQHEEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  I  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G++                                      
Sbjct: 718 GMKL--AREDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEAFNPEELGVALTAD 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILEMANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 80/296 (27%), Gaps = 66/296 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------DSTCKLLV----------------------- 616
                 + L     +++  V         D    L V                       
Sbjct: 713 SDGVRGMKLAREDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEAFNPEELGVAL 772

Query: 617 -----------------VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                            V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TADSILEMANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
              + + ++  + KL+   ++ +    R   GV L    +G    V+   +    T
Sbjct: 833 KMDNELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDEG--EKVVSVSLIAEST 886


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/722 (33%), Positives = 389/722 (53%), Gaps = 29/722 (4%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPTG +++  +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E 
Sbjct: 181 FPTGALVM-GKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEH 239

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I  L+  KRI  +  +RDES  +    +    R    ++++ ++F ++ M+T F  NM  
Sbjct: 240 IVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLA 299

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +  G +P+++ L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I 
Sbjct: 300 IQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIR 358

Query: 406 IIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           IIR  +   + +  ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    + 
Sbjct: 359 IIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLA 418

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L   ++    I  E+ EVK  FS       RRT    +     +   + +IE+  + +
Sbjct: 419 DILAKPERVSQIIKDELDEVKRKFSDK-----RRTEL--MVGQVLSLEDEDLIEESDVLI 471

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +SNRG+I+          K     +     K+ D ++  +   T D +L  +  G+ Y 
Sbjct: 472 TLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYR 531

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEE 628
           L    +        G  +  L+ L+ ++ I T    +        L   +  G       
Sbjct: 532 LKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSV 591

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKG 686
            E     + G   L +  E+++  V+   GD   ++G      + F+   +  MSR   G
Sbjct: 592 KEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATG 651

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           V+  + ++G    V    I +    +    + Y +           RGG G    K   +
Sbjct: 652 VKGVNLREGDTV-VGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEK 710

Query: 747 SG 748
           +G
Sbjct: 711 NG 712



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 555 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 614

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 615 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 673

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 674 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 733

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTW 711
            ++  ++  I +  R   GV++     D  I       + E    
Sbjct: 734 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEV 778



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 528 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 584

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 585 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 644

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 645 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 704

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 705 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 764

Query: 651 K 651
            
Sbjct: 765 V 765


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 400/753 (53%), Gaps = 32/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIV
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  +
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E ++  ++E+ V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALIDNP++S++ LL  + GPDFPTGG+I+  R  I  + R GRG   +R    +E
Sbjct: 190 IDGLLALIDNPDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVAEIE 248

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  R     I++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R
Sbjct: 249 ESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + ++T F  N   L     P ++ L   L  +L+ R++V+ RR+ F
Sbjct: 309 DANPPVVLNRLYAQTPLQTSFGYNFVALVNQ-RPMILSLREALVHFLSFRQDVVTRRTLF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
           R++    R  IL+GL  A   +D+IIA+IR+    D  +  +V +F+ +E Q  AIL++R
Sbjct: 368 RLRKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I +E + +      ++ +L S  +    I  E   ++E +  +     R
Sbjct: 428 LQRLTALERDKIDAEYEEVRLLIRGLEDILGSRSRLMAVIREEFTALRENYGDA-----R 482

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT        D     ++MI  +P  + ++ +G+I+          +      S +  KE
Sbjct: 483 RTRIV---PEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D++ I L     + IL  +  GK Y + A  +        G+ ++  + L   + +   
Sbjct: 540 DDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPVRGFLPLAPEEKVTRM 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    L+ V+  G       S   +  + G   L +   +++  V+    D HV
Sbjct: 600 LNVASFEGDRSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVADADSHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            V       ++F I ++ E  R   GVR    + D  ++D       + +  +    + Y
Sbjct: 660 LVATRRGMAILFPIHEVTEQGRTASGVRAIRLREDDRVADAEIVTETDPVAVVT--EKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG+G  + +G  + G  +S
Sbjct: 718 GKRLDVAKFRHQHRGGMGLKISRGAEKIGAVVS 750



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 14/227 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   L  A  E +   V ++  G I+     +        + AL  +EGD L   L
Sbjct: 592 PEEKVTRMLNVASFEGDRSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVL 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A     +L+ +  G A   P   +         ++  I L  +  +  A +   T  + 
Sbjct: 652 VADADSHVLVATRRGMAILFPIHEVTEQGRTASGVRA-IRLREDDRVADAEIVTETDPVA 710

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKL 670
           VV+ KG    ++ ++     R G   LK+S   +     + LV     D + ++      
Sbjct: 711 VVTEKGYGKRLDVAKFRHQHRGGMG-LKISRGAEKIGAVVSLVKAGDTDDLTIITSKGVT 769

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                +++  M R  +GV +    D              +     +G
Sbjct: 770 NRVQANELRTMGRSAQGVIVMRLADDDTIVSAVVSPPRDVEGEQESG 816


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/771 (32%), Positives = 407/771 (52%), Gaps = 45/771 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSA
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L+++I GPDFPT  I +  +  I E+YR G+G   +RA+ 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAI-INGKSGIEEAYRTGKGKIYIRAQN 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 QIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+E++ RR
Sbjct: 307 IKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQEIIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLN--------------IDEIIAIIRNEDKPKP----VM 417
           S F +  +  R+ IL+GL +A +N              ID    II+   K +       
Sbjct: 366 SLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAK 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  
Sbjct: 426 KHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKS 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  ++  FS       RRT   E          + +I +E + V +S+ G+++      
Sbjct: 486 ELLSIQNNFSDK-----RRTKITE---NHSDINMEDLINQEDVVVTLSHSGYVKYQPLSD 537

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   S    G
Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L+  + I        Y     + + ++ G       S+       G   + +
Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K       + 
Sbjct: 658 HANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSLI 717

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 718 VPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 12/199 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     +      + +  G ++        K     + A++    D L      
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHANDELIGVALT 669

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L + +GK       ++ +       ++  I +  N  +V+  V  +   +L+ 
Sbjct: 670 DGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKG-IKIKKNDKVVSLIVPKNKGSILIA 728

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           +  G     + S+    +R   G   +K+   + + +  +  +  D + ++ +   L+  
Sbjct: 729 TKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRI 788

Query: 674 SIDQIPEMSR-GKGVRLQS 691
            + ++  + R  +GV L  
Sbjct: 789 RVSEVGVLKRNTQGVILIR 807



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  K+ D +   +       IL+ + +G        +        + 
Sbjct: 692 VRTMGRTASGVKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       ++++++  G    +  SE+    R   G   ++ S  
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811

Query: 648 EKMKLVVKV 656
           EK+  + K+
Sbjct: 812 EKVVALQKI 820


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 395/796 (49%), Gaps = 66/796 (8%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP +   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIKETFKTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK- 412
            + L  +L  +L  R E + RR+ F ++  + R  I+ GLL+A   +DEII +IR+    
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDT 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q +AIL ++LR L  LE  +IK E D L  +      +LNS ++
Sbjct: 419 VSARENLQADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKINLYKQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++ E FS             E+           +I  +   V+++  G++
Sbjct: 479 IFEIILEELNKIDERFSSPRK--------TEILDLGGGLDDIDLIANDRSVVLLTEAGYL 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           + +           S   +    +E D +K+ +  +  D +LL S  G +Y LPA  +  
Sbjct: 531 KRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPM 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G     L+ +   + I   V    +D+ C LL+++  G       S        
Sbjct: 591 SSRTAKGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIRSN 650

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           G   + +   + +  V     GD V +       + F   I+++  + R  +GV+  + +
Sbjct: 651 GLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLR 710

Query: 694 DGGISDVICFKI---------------------------CEGLTWIDSAGRSYNRSENDL 726
            G   +++   +                            EG   + ++     +     
Sbjct: 711 KG--DNLVSMDVLTSDLVDQLAKSEDITKESDENLEVNSSEGPWVLIASAFGLGKRVPVT 768

Query: 727 LGWLGKRGGVGSLVPK 742
              L KR G+G    K
Sbjct: 769 QFRLQKRAGMGLRAIK 784



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 89/247 (36%), Gaps = 39/247 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +     + +   ++++  G+I+        K  S  L A++ ++GD+L  
Sbjct: 606 IPREEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIRSNGLIAINLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLLI--------------- 594
              +   D +L+ S  G A  + L    L  L     G     L                
Sbjct: 666 VRLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSMDVLTSDL 725

Query: 595 --DLNHNQDIVTA------FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV 644
              L  ++DI                 +L+ S+ G    V  ++     R G     +K 
Sbjct: 726 VDQLAKSEDITKESDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKF 785

Query: 645 SSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDV 700
             ++ + + +KV   G+ +  V E   ++  + D+I + SR   GV+LQ    G  +S+V
Sbjct: 786 RIKDDVLVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDMGDHLSEV 845

Query: 701 ICFKICE 707
           +     +
Sbjct: 846 VLVPHEQ 852


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/768 (35%), Positives = 438/768 (57%), Gaps = 34/768 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +DN  +   L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMS
Sbjct: 5   IDNTLDP-ILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMS 63

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   
Sbjct: 64  ELGLKSTAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD 123

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+
Sbjct: 124 DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTT 183

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +  
Sbjct: 184 GIAVGMATDIPPHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQA 243

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG +++RA + +    +    +++  +PYQV  +++ E+IA+L+  K++P + DI
Sbjct: 244 IYETGRGSYKMRATFHI--DPKEKNLVIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDI 301

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES  +   RIVL  K+  +D   +M  +F  +D+E+ + +NMN++ +   PQV  L  
Sbjct: 302 HDESDHENACRIVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKE 361

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL  RR V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++ 
Sbjct: 362 ILEEWLVCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQ 421

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + LTE Q +AIL++RLR L KLEE +++ E D L AE+  I   L++     N +  E+
Sbjct: 422 DYDLTEIQANAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTNLMIDEL 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  +   + G  R +        +A  +  ++  EP+T ++S  GWIR+ K H VD
Sbjct: 482 T------ADMKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWIRAAKGHDVD 535

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + ++ GDS +  + A   ++I +L + G++Y++ A +L S RG G+ +  ++     
Sbjct: 536 AAGMAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAG 595

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
                    D+  ++++ SS+G  FI     + +N + GK  + ++++ ++  + ++   
Sbjct: 596 ATFEQLLTGDNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQ 655

Query: 659 ---------------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
                                DH+AVV     LLIF++D +PE +RGKG ++ + K    
Sbjct: 656 TEVIVSSENNGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARGKGNKMINLKGDEE 715

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
              I          I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 716 VLTITPLSKHDSLVITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGFQ 763


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/742 (35%), Positives = 440/742 (59%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  D    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRSYNRS 722
           ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  R     
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRKITLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
            +D+  + G+R   GS + +G 
Sbjct: 717 PSDIDNYRGERARKGSQLVRGL 738


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 61  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 241 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 709

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 710 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 746


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/753 (34%), Positives = 401/753 (53%), Gaps = 63/753 (8%)

Query: 4   DNIS-NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +N+  N     + +   VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM 
Sbjct: 9   ENMDENKPERPQYDGPTVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMH 68

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+G      ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++D
Sbjct: 69  EVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMD 128

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD+ AA RYTE RM + A  IL  +++D VDF+D Y+ +D EP V P++FPN+L NG  G
Sbjct: 129 GDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGG 188

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A LALI++P+++ E+L+EYI GPDFPTGG+++  R    ++
Sbjct: 189 IAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKA 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  VEE+ +  + IVV EIPYQV K+ +IEKIAE +  KRI  +  ++
Sbjct: 248 YLEGRGSVIIRAKTKVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQ 307

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R   P++++  ++  S M+T F  NM  L+ G  P+ + L   L 
Sbjct: 308 DESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALN-GGRPEQLTLRRFLS 366

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            ++  R +V+ RR+++ ++    R  IL GL +A  N+DE++A IR              
Sbjct: 367 SFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMT 426

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      ++L+E Q  AIL LRL+ L ++   ++  EL+ 
Sbjct: 427 RRWPASDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEE 486

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  + ++   +L+S ++    I+ E+REV++ F+       RRT   E+         + 
Sbjct: 487 LAGKIKEYLEILSSRERILGIISDELREVRDNFAVP-----RRT---EIVDWSGDMEDED 538

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V I++ G+I+          K     LS +  KE D +     A+T  ++L 
Sbjct: 539 LIEREDMVVTITSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLF 598

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVV 617
            +TDG  Y L    L  G     G+AI  ++ +     I      D         +++  
Sbjct: 599 FTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFA 658

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFS 674
           +S G+      S+     R GK  +K+  +  +KLV   +    D V +  ++ + + F 
Sbjct: 659 TSAGDVRRNRLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFR 718

Query: 675 IDQIPEM-SR-GKGVRLQSYKDGGISDVICFKI 705
              +    SR   GVR       G   V+   +
Sbjct: 719 TTDVRVFNSRESTGVRGIRL--NGDDHVVSMSV 749



 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +        IV +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 819 HDYPVRGRGGMGVTAMDKAMRGGAIVASFPVEMDDQIMLATSKGQSIRVPIDGISFRSRS 878

Query: 638 --GKTFLKVSSEEKMKLVVKVTGD 659
             G         E++  V  +   
Sbjct: 879 AGGVRVFNTGKGEEVVSVAWIAEQ 902


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/771 (32%), Positives = 407/771 (52%), Gaps = 45/771 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSA
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L+++I GPDFPT  I +  +  I E+YR G+G   +RA+ 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAI-INGKSGIEEAYRTGKGKIYIRAQN 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 QIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+E++ RR
Sbjct: 307 IKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQEIIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLN--------------IDEIIAIIRNEDKPKP----VM 417
           S F +  +  R+ IL+GL +A +N              ID    II+   K +       
Sbjct: 366 SLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAK 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  
Sbjct: 426 KHEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENPKKMFEVIKS 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  ++  FS       RRT   E          + +I +E + V +S+ G+++      
Sbjct: 486 ELLSIQNNFSDK-----RRTKITE---NHSDINMEDLINQEDVVVTLSHSGYVKYQPLSD 537

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   S    G
Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L+  + I        Y     + + ++ G       S+       G   + +
Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K       + 
Sbjct: 658 HANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSLI 717

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 718 VPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  K+ D +   +       IL+ + +G        +        + 
Sbjct: 692 VRTMGRTASGVKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       ++++++  G    +  SE+    R   G   ++ S  
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811

Query: 648 EKMKLVVKV 656
           EK+  + K+
Sbjct: 812 EKVVALQKI 820


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 243/751 (32%), Positives = 389/751 (51%), Gaps = 60/751 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D   ++          VS+   ++  YL YA+S I  RAIPDLRDG KP HRRI++AM 
Sbjct: 8   TDPSGDTPKRAHHAGPVVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMH 67

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G      ++KSAR VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++D
Sbjct: 68  ETGNTHDKPYRKSARPVGDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMD 127

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE RM + A  +L  +++D VDF+D Y+ +D EP V P++FPN+L NG  G
Sbjct: 128 GDSAAAMRYTEVRMDKPAAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGG 187

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +A LALI+NP++S E L++Y+ GPDFPTG  I+  R    ++
Sbjct: 188 IAVGMATNIPPHNLGEVIDATLALIENPDLSSEALMDYVPGPDFPTGAQIM-GRGGARKA 246

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RA+  +EE+ +  + I++ EIPYQV K+ +IEK+A+L+  K++  +  I 
Sbjct: 247 YLEGRGSVIIRAKTRIEEIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIA 306

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    D+++  ++  + ++T F  NM  L+ G  P+ + L   L 
Sbjct: 307 DESDRVGVRVVIELKRDATADVVLNQLYRFTPLQTSFGCNMLALN-GGRPEQLTLRDFLS 365

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417
            ++A R EV+ RR+++ ++    R  IL GL +A  N+DE++A IR+   P         
Sbjct: 366 HFIAFREEVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLME 425

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      ++L+E Q  AIL+LRL+ L  +   ++  EL  
Sbjct: 426 RRWPAHEIVEYLRLIDDPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAE 485

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  +     ++L S ++    IA E+REV+   +       RRT   E+         + 
Sbjct: 486 LAGKIRDYLAILASRERIMAIIATELREVRAAHAVP-----RRT---EIVDWAGDLDDED 537

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V I++ G+I+          +     L+++  KE D +     A+T  ++L 
Sbjct: 538 LIEREDMVVTITSGGYIKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLF 597

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVV 617
            +TDG  Y+L    L        G+AI  ++ +     + +    D         ++   
Sbjct: 598 FTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFA 657

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           +S G+      S+     + GK  +++     +         D + +V  + + + F + 
Sbjct: 658 TSDGDVRRNALSDFAKVMKNGKRAMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVP 717

Query: 677 QIPE-MSR-GKGVRLQSYKDGGISDVICFKI 705
           ++     R   GVR     +G    V+   +
Sbjct: 718 EVRIFKGRSSTGVRGVRLAEG--DKVVSMSV 746



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRK 669
           +L +++KG   I          R G+             +     V   D V +     +
Sbjct: 808 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRGGALVASFPVEPTDQVMLATSTGQ 867

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            +   +  I   SR   GV++  +  G   +V+   
Sbjct: 868 SIRCPVAGISFRSRAAGGVKV--FNTGAEEEVVSVA 901


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 437/750 (58%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDPKTELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESEMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L++K GDS +      +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LNYKAGDSYRAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMAGEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D     +    I +  +    S
Sbjct: 647 VIAITSAGRMLIFPAQDLPVLSKGKGNKIITIPAANAKDRSELLIKLLLISDQASLEFHS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 748


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 245/803 (30%), Positives = 397/803 (49%), Gaps = 62/803 (7%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S+++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I NP I   +L E I GPDFPTGG I+  RE
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRE 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGE-PT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK- 412
            + L  +L  +L  R E + RR++F ++  + R  I+KGLL+A   +DEII +IR+    
Sbjct: 359 TLSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDS 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q DAIL ++LR L  LE  +IK E + L  +      +LNS ++
Sbjct: 419 ISAREKLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++   FS             E+           +I  +   V+++  G++
Sbjct: 479 IFEIILEELNQIDGKFSSPRK--------TEILDLGGGLDDIDLIANDRSVVLLTEAGYL 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           + +           S   +    KE D +K+ +  +  D +LL S  G AY LPA  +  
Sbjct: 531 KRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G     L+ +   + I +    D       LL+++  G       S        
Sbjct: 591 SSRTAKGTPSVQLLPIPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSN 650

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           G   + +   + +  V     GD V +  +    + F   I+++  + R  +GV+  + +
Sbjct: 651 GLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLR 710

Query: 694 DG-------------------------GISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +G                          + D +     +G   + ++     +       
Sbjct: 711 EGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQF 770

Query: 729 WLGKRGGVGSLVPKGFPRSGKFL 751
            L KR G+G    K   +  + +
Sbjct: 771 RLQKRAGMGLRAIKFRIKDDQLV 793



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 41/244 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +       +   ++++  G+I+        K  S  L A++ ++GD+L  
Sbjct: 606 IPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
              +   D +L+ S  G A  + L    L         ++ + +L    ++V+  V    
Sbjct: 666 VRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSM-NLREGDNLVSMDVLTSN 724

Query: 609 -----------------------DSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLK 643
                                       +L+ S+ G    V  ++     R G     +K
Sbjct: 725 LVDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIK 784

Query: 644 VSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISD 699
              ++   + +KV   G+ + +V E   ++  + D+I + SR   GV+LQ   DG  +S+
Sbjct: 785 FRIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSE 844

Query: 700 VICF 703
           V+  
Sbjct: 845 VVLV 848



 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIA------------------------LHAHTTD--RI 563
           +R L   +  + +++ +EGD+L                           +  +++D   +
Sbjct: 694 LRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDLDDNVEENSSDGPWV 753

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+ S  G    +P       +  G  ++ +     +  +V   V     +LL+V+ KG  
Sbjct: 754 LIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLKVLGEGEELLLVTEKGVI 813

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
                 +I   +R   G    ++   + +  VV V  + +
Sbjct: 814 VRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPREQI 853


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/771 (32%), Positives = 407/771 (52%), Gaps = 45/771 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSA
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L+++I GPDFPT  I +  +  I E+YR G+G   +RA+ 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAI-INGKSGIEEAYRTGKGKIYIRAQN 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 QIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+E++ RR
Sbjct: 307 IKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQEIIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLN--------------IDEIIAIIRNEDKPKP----VM 417
           S F +  +  R+ IL+GL +A +N              ID    II+   K +       
Sbjct: 366 SLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAK 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  
Sbjct: 426 KHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKS 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  ++  FS       RRT   E          + +I +E + V +S+ G+++      
Sbjct: 486 ELLSIQNNFSDK-----RRTKITE---NHSDINMEDLINQEDVVVTLSHSGYVKYQPLSD 537

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   S    G
Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L+  + I        Y     + + ++ G       S+       G   + +
Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K       + 
Sbjct: 658 HTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSLI 717

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 718 VPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 12/199 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     +      + +  G ++        K     + A++    D L      
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHTNDELIGVALT 669

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L + +GK       ++ +       ++  I +  N  +V+  V  +   +L+ 
Sbjct: 670 DGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKG-IKIKKNDKVVSLIVPKNKGSILIA 728

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           +  G     + S+    +R   G   +K+   + + +  +  +  D + ++ +   L+  
Sbjct: 729 TKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRI 788

Query: 674 SIDQIPEMSR-GKGVRLQS 691
            + ++  + R  +GV L  
Sbjct: 789 RVSEVGVLKRNTQGVILIR 807



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  K+ D +   +       IL+ + +G        +        + 
Sbjct: 692 VRTMGRTASGVKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       ++++++  G    +  SE+    R   G   ++ S  
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811

Query: 648 EKMKLVVKV 656
           EK+  + K+
Sbjct: 812 EKVVALQKI 820


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRTERGRKGSTLPRGL 736


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 408/770 (52%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+     +KK
Sbjct: 5   EKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GD  AA RYTEA
Sbjct: 65  SAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A I+N +I I++L++YI  PDFPTGGI +   E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGI-IYGYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +EV RG  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA     +++
Sbjct: 244 KAEFQEV-RGKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L  G  P+ + L  ++  ++ HR EV++R
Sbjct: 303 ILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKG-RPEQLNLKDLIYHFVEHRHEVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ IL+G +        + + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKEDLIAEFDLTDIQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +  +  
Sbjct: 422 LALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDA-- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RR+T      A      + MI  + + + IS+ G+I+              V   A 
Sbjct: 480 ---RRSTI---EYAGGEFSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G     G A+Q LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAVQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y +   L++ + +G        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              +G   + +  ++ + + F  D++  + R  +GVR      ++  +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITEKTGQLVA 763



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 20/227 (8%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L+          ++ + +G ++        +     ++A+  KEGD L  A     + ++
Sbjct: 603 LKDEEYINNNYLIMATKQGTVKKTLLKEYSRPRQNGINAITIKEGDELIEAKLTSGSSQL 662

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKG 621
           +L    G+A       + +   + + ++ +     N ++V     ++     +LVVS  G
Sbjct: 663 MLAVKSGRAIRFGEDKVRAVGRNSQGVRGIDLDTENDEVVGMIAIENPREETVLVVSENG 722

Query: 622 NAFI-------VEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKL 670
                        E+      R GK    +S  EK   +V +     G+ + ++ ++   
Sbjct: 723 YGKRSYIDEPETHEAVYRITNRGGKGVKTISITEKTGQLVAIKSVLEGEDLMIINKSGIA 782

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  SID +    R   GV+L + K       +   + E     D+A 
Sbjct: 783 IRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVMKEDDDETDAAE 829


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/735 (34%), Positives = 384/735 (52%), Gaps = 60/735 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 25  QVSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            +  +L  +++D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PSASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I +A LALI NP+++ E+L++Y+  PDFPTGGII+  R    ++Y  GRG   +RA+  V
Sbjct: 205 IIDATLALITNPDLTSEELIQYVPAPDFPTGGIIL-GRTGARKAYIEGRGSVVIRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ LIEKIAE +  KRI  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  +L  R EV+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTSFGCNMLALN-GGRPEQLTLRRFLTSFLDFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            ++    R  +L GL +A  N+DEI+A IR    P                         
Sbjct: 383 ELRKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALID 442

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               +      ++L+E Q  AIL LRL+ L  L   ++  EL  L A   +   +L S +
Sbjct: 443 DPTHRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E++EVK+ F+       RR+   E+         + +IE E + V ++  G+
Sbjct: 503 RIMGIITDELQEVKDKFAVP-----RRS---EIIDWSGDMEDEDLIESEDMVVTVTATGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  KE D +     A+T  ++L  +T G  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     +      D         +++  ++ G+      S+   
Sbjct: 615 QGGRTAKGKAIINILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQ 690
             R GK  +K+    ++      +  D V +V +  + + F    +     R   GVR  
Sbjct: 675 VMRNGKIAMKLPEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGI 734

Query: 691 SYKDGGISDVICFKI 705
              +G    V+   +
Sbjct: 735 RLAEG--RSVVSMAV 747


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/771 (32%), Positives = 407/771 (52%), Gaps = 45/771 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL Y++S I  RA+PD+RDG KPVHRRI+ AM  +  D+  A+KKSA
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  ++++ V+F   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +I++E+L+++I GPDFPT  I +  +  I E+YR G+G   +RA+ 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAI-INGKSGIEEAYRTGKGKIYIRAQN 246

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            + +        IV  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 QIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR+E++ RR
Sbjct: 307 IKREAIAEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQEIIIRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLN--------------IDEIIAIIRNEDKPKP----VM 417
           S F +  +  R+ IL+GL +A +N              ID    II+   K +       
Sbjct: 366 SLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAK 425

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +E QV AIL+LRL  +  LE+ +I  E ++L+ + +++  +L + K+ +  I  
Sbjct: 426 KHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKS 485

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  ++  FS       RRT   E          + +I +E + V +S+ G+++      
Sbjct: 486 ELLSIQNNFSDK-----RRTKITE---NHSNINMEDLINQEDVVVTLSHSGYVKYQPLSD 537

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +      SA   KE D ++  + A+T D IL  S+ G  Y +    L   S    G
Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ L+  + I        Y     + + ++ G       S+       G   + +
Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
            + +++  V    G +++ +  +N K++ F  + +  M R   GV+    K       + 
Sbjct: 658 HANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKNDKVVSLI 717

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +G + + +    Y +        +  R   G +  K   ++GK + +
Sbjct: 718 VPKNKG-SILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 12/199 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     +      + +  G ++        K     + A++    D L      
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHANDELIGVALT 669

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
              + I+L + +GK       ++ +       ++  I +  N  +V+  V  +   +L+ 
Sbjct: 670 DGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKG-IKIKKNDKVVSLIVPKNKGSILIA 728

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           +  G     + S+    +R   G   +K+   + + +  +  +  D + ++ +   L+  
Sbjct: 729 TKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRI 788

Query: 674 SIDQIPEMSR-GKGVRLQS 691
            + ++  + R  +GV L  
Sbjct: 789 RVSEVGVLKRNTQGVILIR 807



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +  K+ D +   +       IL+ + +G        +        + 
Sbjct: 692 VRTMGRTASGVKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQG 751

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       ++++++  G    +  SE+    R   G   ++ S  
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811

Query: 648 EKMKLVVKV 656
           EK+  + K+
Sbjct: 812 EKVVALQKI 820


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 261/747 (34%), Positives = 430/747 (57%), Gaps = 16/747 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              +  E ++  S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 3   QQMINYEGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAA 127
            A  KKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G++D   S A
Sbjct: 63  TAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVDDPKSFA 122

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ ++L+L+   +  VD+   ++   +EP V P++ P++L NGTSGIAVGM
Sbjct: 123 AMRYTEAKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIAVGM 182

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A +AL+DN  ++ ++L E++ GPD+P   +++      +  Y  G 
Sbjct: 183 ATDIPPHNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGS 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  R RA + VEE       +V+  +P+QV  ++++E+IA  + AK++P++ D+RDES  
Sbjct: 243 GSIRQRANYFVEEGVN----VVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDH 298

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +R+V+  +++ +D +  M  +F  +D+E  + +N+NV+ +   PQV  L  +L EWL
Sbjct: 299 ENPIRLVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLKTMLTEWL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            +R E + RR   R+  +  R+ IL GLLIA+LNIDE+IAIIR EDKPKPV++ RF L++
Sbjct: 359 VYRTETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPVLMERFGLSD 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +A+L L+LR L KLEE +I+ E + L AE++KI+ +L S  +    +  E+    E 
Sbjct: 419 TQAEAVLELKLRQLAKLEEMRIRGEQEELEAERKKIEKILGSAARMKTLVKKELLSDAEA 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +      G  R +    ++  +A  +Q ++  E ITVV+S  GW+R+ K H VD   L +
Sbjct: 479 Y------GDDRRSPLSDAKQAQAMSEQDLLPSESITVVLSENGWVRAAKGHDVDGRTLGY 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +    + L   G+AY+LPA +L S R HGE +   +           
Sbjct: 533 KSGDAFCSQALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQV 592

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVV 664
            +     + ++ SS G  FI E   + +  + GK  + +    ++    +V  ++ V VV
Sbjct: 593 MLGQPKEQYVLASSAGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVV 652

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSE 723
            +  ++L+F + ++P +S+GKG +L     G  +  +  FK  + +  + +   S +   
Sbjct: 653 TDEPRMLVFEMSELPVLSKGKGNKLMQMPKGVSVKAIFAFKPGQKVEVV-AGKYSKSFGA 711

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +      R   G  +P+    + + 
Sbjct: 712 TAIEEAFSNRAKRGIPLPRTLKNTNEI 738


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 268/757 (35%), Positives = 438/757 (57%), Gaps = 23/757 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ S T    +V+   L   +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 3   MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP + GQGN+G+  D  
Sbjct: 63  LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR++  A+L+L+ + E  VD+   ++    EP + P++ PN+L NGTSGIA
Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT   I+     I   YR
Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G  R+RA +  E        IV+T +P+QV  +R++E+IA  ++AK++P + DIRDE
Sbjct: 243 TGQGSLRMRATYQKEN-----GEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ P++  ++   LM  +F+ +D+E  + +N+N++ +   P+V  L  +LK
Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + +R  +R+Q +  R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F 
Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q +AIL ++LR L KLEE +I+ E   L  E+++I+  L S  +    I  E+   
Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           KE +      G +R +        K   ++ M+  EP+TVV+S +GWIR+ K H V+   
Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L+++ GD   +     T +  + L + GK+Y LPA  L S RG G+ +   +        
Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           V   +       L+ S  G  F+     +    R GK  +K+    ++ L  +V      
Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651

Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWID 713
            +A +    +LL+F I ++PE+ +GKG ++       +++       +     +    + 
Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPSRVANREEYCVALAVLHEKSSLTLY 711

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S  R +    +DL  + G+RG  G+ +P+GF +    
Sbjct: 712 SGKRRFTLKPDDLAQFQGERGRRGNKLPRGFRKVDNV 748


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 268/751 (35%), Positives = 413/751 (54%), Gaps = 34/751 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E G+    A+K
Sbjct: 5   EGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD +VYDS VR+AQ F  RYPL+ G GNFG+IDGDSAAA RYTE
Sbjct: 65  KSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM ++   +L+ +D+D VDF   Y+   +EP+V PS+ PNLL NG+ GIAVGMAT++P 
Sbjct: 125 MRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+     A+IDNPEI+I++L++YI GPDFPT  I ++  + I ++YR GRG   VR
Sbjct: 185 HNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAI-IQGHKGIEDTYRTGRGSITVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE+ RG   I+VTE+PYQV K+RL+E IA+L   K I  +  +RDES      ++
Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ +++  + M+  F   M  L  G  P+++ L  IL  +L H+ EV+ 
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGH-PRILNLKQILYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RRS + ++  + +  IL+GLLIA  +IDE+I  IR        K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISKFGLSEKQAVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+++  ++      +  LL+S ++    +  E+ + K  F    
Sbjct: 423 ILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLLSSREKIMGVVKAELTDEKNNFGDK- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT   E++ A        +I  +P+T+ ++ + +I+          K     +S 
Sbjct: 482 ----RRT---EIAAALGDMDVTDLIPDKPMTITLTKQNYIKRIDSSDLRTQKKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHN 599
           L  K+GD ++  L   T DRIL  +  GK Y   A ++   S    G A+   I  L  +
Sbjct: 535 LKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARGSAMINFITSLGAD 594

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +      D     T  LL+V+  G        E     + G   +++  E+++  V+ 
Sbjct: 595 EHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDRLVAVLP 654

Query: 656 VTGDHVAVV-GENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           V G+   ++       + FSID   +  +SR   GV     K+G     +     + +  
Sbjct: 655 VKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRLKEGDDVVGVVVAAEKDIFT 714

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I + G +  +        L  R G G++  K
Sbjct: 715 ISADGNA--KRNAASAYRLQGRNGQGTINFK 743



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 17/213 (7%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDS 550
           T+        +        E     ++++  G+I+              L A+  K+ D 
Sbjct: 589 TSLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDR 648

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           L   L     + I++ +  G A      +     LS    G     L       D V   
Sbjct: 649 LVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRL----KEGDDVVGV 704

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           V  +   +  +S+ GNA     S      R G+  +      ++  +V     D +  + 
Sbjct: 705 VVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYEVVALVAADDRDELVGIS 764

Query: 666 ENRKLLIFSIDQIPEM--SRGKGVRLQSYKDGG 696
           E    +    DQI       G+GV LQ  ++G 
Sbjct: 765 EQGITIRIPADQISSKKAKGGQGVILQRLEEGD 797


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/849 (30%), Positives = 389/849 (45%), Gaps = 108/849 (12%)

Query: 1   MGVD--NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D   I       E   + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               E G   G  ++KSARIVG+ +GK HPHGD ++YD+L R+ Q +  R PLI GQGNF
Sbjct: 61  WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++D D  A+ RYTEAR+ +VA+ +L  +++D VDF+  Y+  + EP V P++FPNLL N
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVGMAT+IP HN+ E+ +  LA +DNP I +E+L+  I GPDFPT  +I+     
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLIL-GTAG 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             ++Y  GRG   +RAR  VEE  RG     IV+T IPYQV KS L+EKIAE    KRI 
Sbjct: 240 ARKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIE 299

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + DIRDES  +   V+    R   PD+++  ++  +  ++ FP NM  +  G  P+++ 
Sbjct: 300 GISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAI-RGGRPELLG 358

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           L  I++ ++  R EV+ RR+ F +     R  IL GL+IA  N+DE++ IIR    P   
Sbjct: 359 LKDIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALA 418

Query: 417 MV------------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                             + L+E QV AIL+LRL  L  L   +
Sbjct: 419 RERLLAREWPIGEIAPYIRLVEAIEDDALTGTETYRLSEIQVRAILDLRLHRLTALGRDE 478

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I  EL+ L     +  S+L    + +  +  E+  VK  ++             E++   
Sbjct: 479 IGEELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATP--------RLSEITAPA 530

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAH 558
                + +IE++ + V I+  G+I+                 S +  K+ D++     A 
Sbjct: 531 DGIDDEDLIERDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVAS 590

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLID-LNHNQDIVTAFVYDSTC--- 612
           T   +L  ST GK Y      L  G     G  +  L+  L+  + I             
Sbjct: 591 THTPVLFFSTAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEW 650

Query: 613 ---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGE 666
               ++  ++KGN               GK  +K    ++  L+   +   GD V +   
Sbjct: 651 GKLHVMFATAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASR 710

Query: 667 NRKLLIFSIDQIPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGR------- 717
             K + F  D + E  SR   GVR  + KDG   +VI   I   +   D   R       
Sbjct: 711 QGKAIRFPADDVREFQSRTSTGVRGMALKDG--DEVISLSILHRVGVRDQEERDEYLRYA 768

Query: 718 ---------------------------------SYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                             Y +  +        RGG G +     
Sbjct: 769 PWKAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNI 828

Query: 745 PRSGKFLSS 753
            R+G  ++S
Sbjct: 829 ERNGLVVAS 837



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
           E    D       + E + + +       IR             S  +  +  K+GD + 
Sbjct: 686 EEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTGVRGMALKDGDEVI 745

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                    R+ +   + +   L      + +  GE                  + +   
Sbjct: 746 SL---SILHRVGVRDQEERDEYLRYAPWKAEKD-GEPTIAAERFAE--------LSEKEQ 793

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK----VTGDHVAVVGENR 668
            +L V S G   +    E     R G+  + + + E+  LVV        D + +V +  
Sbjct: 794 FVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNIERNGLVVASFPAARADQLMLVTDQA 853

Query: 669 KLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEG 708
           KL+   +D +  + RG  GVRL +  D   +   +     EG
Sbjct: 854 KLIRLPLDSLRVIGRGSAGVRLFNVADNEQVVSAVRLAETEG 895


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/738 (33%), Positives = 388/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 25  QISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKPYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L LI+NP+++ E L+EYI GPDFPTGGI++  R    ++Y  GRG    RA+   
Sbjct: 205 VIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRTGARKAYLEGRGSVITRAKTHT 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++TEIPYQV KS +I++IAE    K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLRRFLTSFLDFREDVVIRRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR--------------- 420
            +     R  +L GL +A  N+DE++A IR        +  +++R               
Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAAEILPFILLID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++  ++L S +
Sbjct: 443 DPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLAILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ E K +F+       RRT   + S        + +IE + + V ++  G+
Sbjct: 503 RIMQIITDELAECKTLFAVP-----RRTQIVDWSG---DMEDEDLIESQDMVVTVTETGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     +S    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNKLSDFTK 674

Query: 634 NTRKGKTFLKVS-SEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K     E ++L+   +    D V +V  + + + F+   +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGENEGVQLINARICSDDDDVMLVTNSGRAIRFASTDVRVFNSRASLGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R    K  G   ++   +
Sbjct: 735 RGIRLK--GDDKIVSMSV 750



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 62/207 (29%), Gaps = 32/207 (15%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW-IRSLKSH--------SVDLSALHFKEGDSL 551
           E        +   +   +   ++++N G  IR   +         S+ +  +  K  D +
Sbjct: 686 EGENEGVQLINARICSDDDDVMLVTNSGRAIRFASTDVRVFNSRASLGVRGIRLKGDDKI 745

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT------- 604
                           +D +A  L     ++G      I        ++D+         
Sbjct: 746 VSMSVIR----HFEAESDERAAYLKMRRAMAGLADDAEI-------EDEDVTAGNITQER 794

Query: 605 -AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GD 659
            A +  S   +L +++ G+  +    +     R G     +       ++     V   D
Sbjct: 795 YAEMSASENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEIVASFPVEMDD 854

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG 686
            + +     + +   ++ I   SR  G
Sbjct: 855 QIMLATSKGQSIRVPVEGISFRSRSAG 881



 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +       +IV +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 820 HDYPLRGRGGMGVTAMDKAMRGGEIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRS 879

Query: 638 --GKTFLKVSSEEKMKLVVKVTG 658
             G         E +  V  +  
Sbjct: 880 AGGVKVFNTGKNEIVVSVAYIAD 902


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 232/794 (29%), Positives = 393/794 (49%), Gaps = 66/794 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V L+ +++  Y+ YA++ I  RA+PD+RDG KPVHRR+++AM + G      F K 
Sbjct: 22  RIEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKC 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+G+ HPHGD ++YD+LVRLAQP+V R PLI GQGNFG+   DSAAA RYTE R
Sbjct: 82  SRVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECR 141

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ ++ED VDF+  Y+    EPVV P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 142 MAPLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHN 201

Query: 196 VQEICEAALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ E A   +++P+ + E+L    +E I GPDFP G +IV  R+ I ++YR GRG   
Sbjct: 202 LREVAEGARWALEHPDATREELQDALIERIKGPDFPNGALIV-GRQGIEQAYRTGRGSIT 260

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
            RA   V+E  +G   +V+TE+PY V    L  KIAEL  + ++  + D+RD+ S    +
Sbjct: 261 QRAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQ 320

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R     +++ ++   ++++T F  NM  L  G VP+ + +D  +  W+ H+ +
Sbjct: 321 RLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDG-VPRTLAIDQFISNWVTHQID 379

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ RR+ +R+   ++R  +L+GL+ A   +DE+IA+IR      + +  +++   + E Q
Sbjct: 380 VIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAREGLIALLDIDEVQ 439

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  L+  +I  +L  + A    +  +L +  +Q   +A E+ E+ E + 
Sbjct: 440 ATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYG 499

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539
                  RR+       AD     + +I  E + V I+  G+         R+ +     
Sbjct: 500 D-----DRRSQII---AADGDLSMEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKG 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
           +     +  D ++  +       +L  +T G+ Y   A NL   S    G  +  L+   
Sbjct: 552 VRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEASRDAKGGHVAGLLSFQ 611

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLV 653
            +++I        YD    L++ +  G        +  +  + G   +     ++++   
Sbjct: 612 PDENIAQVLAIRDYDQAPYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGA 671

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGKG-VRLQSYKDGGI------------ 697
             V   DH+ +V    + + F  D   +  M R  G V    ++DG              
Sbjct: 672 ELVNPEDHILLVSRKGQSVRFQADDSQLRPMGRATGGVTGMKFRDGDSLLSMSVIRAAQV 731

Query: 698 ----------SDVICFKICEGL-------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                       V       G                 + +        +  RGG+G   
Sbjct: 732 EAEEAAEASGESVEEMAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRA 791

Query: 741 PKG-FPRSGKFLSS 753
            K      G+ + +
Sbjct: 792 MKLANEDRGELVGA 805



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 38/238 (15%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----------IR 531
            K          +           D   +   ++  E   +++S +G           +R
Sbjct: 641 KKTRLGDYNSPRQAGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVRFQADDSQLR 700

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            +   +  ++ + F++GDSL               + +    ++       G+  G    
Sbjct: 701 PMGRATGGVTGMKFRDGDSLLSMSVIRAAQVEAEEAAEASGESVEEMAETRGQWFGLH-- 758

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEK 649
                                 +  ++  G A   +  E    +R G     +K+++E++
Sbjct: 759 -------------------PQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLANEDR 799

Query: 650 MKLV---VKVTGDHVAVVGENRKLLIFSIDQ-IPEMSRGK-GVRLQSYKDGGISDVIC 702
            +LV   +   GD +  +    +++   ID+      R   GV+  + K G    V+ 
Sbjct: 800 GELVGAFIVEDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVTPKKGDSVAVVA 857


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 378/754 (50%), Gaps = 61/754 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   ++  YL YA+S I  RAIPD RDG KPVHRRI+ AM E G     A+KKSA +V
Sbjct: 14  VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD ++YD+L R+AQPF    PL+ GQGNFG++DGD  AA RYTE RM   
Sbjct: 74  GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L  +D+D V+FRD Y+    EPVV P+++PNLL NG  GIAVGMAT+IP HN+ E+
Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +AL+D P+I+  +LLE++  PDFPTGG I+  R    ++   GRG   +RA+  +E
Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEII-GRSGARKALLEGRGSVILRAKTSIE 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++ +G   I+V EIPYQV K+ ++EKIAEL+  KRI  + D+RDES      V+    + 
Sbjct: 253 DIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIELKKD 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++  S ++T F +NM  L  G  PQ   L   L+ ++ HR+EV+ RR+ F 
Sbjct: 313 ANAEVILNQLYRWSPLQTSFGVNMLALI-GGRPQQAGLRVFLETFIHHRKEVVVRRTKFD 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  +L GL +A  NIDEIIA+IR    P+                         
Sbjct: 372 LRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVELVAD 431

Query: 419 -------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                      LTE Q  AIL+LRL  L  L   +I  E + L      +  +L S  + 
Sbjct: 432 PRSQIRDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRSPTRI 491

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            + I  E+ + K  F        RR+   E    D     + +I +E + V +++ G+++
Sbjct: 492 RDIIRNELLDSKASFGVE-----RRSAIIE---GDLGIEDEDLIPREDMVVTLTHGGYVK 543

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                            + +  K+ D +     A T   +L  S+DG  Y      L  G
Sbjct: 544 RTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWRLPLG 603

Query: 584 RGH--GEAIQLLID-LNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIAN 634
             +  G+ +  L+  LN    I +               ++  ++ G     + S+ +  
Sbjct: 604 APNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRRNKLSDFVQV 663

Query: 635 TRKGKTFLKVS-SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQ 690
            R GK  +K+     K+  V     D  V +V    + + F +  +   +     GVR  
Sbjct: 664 NRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGI 723

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
             K+     +I   I   +       R+Y R  N
Sbjct: 724 RLKEN--DRLISMAILNHIDVTTDEARAYMRHAN 755



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 17/199 (8%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
               +S  +  +  KE D L      +    I + + + +AY   A  +    G  E   
Sbjct: 712 FASRNSTGVRGIRLKENDRLISMAILN---HIDVTTDEARAYMRHANAMRRAAGLEEDDA 768

Query: 592 LLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFIVEESEI--IANTRKGKTF 641
           ++      +      +              +L V+  G        +   +    +G   
Sbjct: 769 VVSAPEDGEAGADVALSPERIAELGAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAA 828

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG--GI 697
             +S  +++     V  GD V  V +  +L+ F +D +   +R  KGVRL    +G   +
Sbjct: 829 HDMSKVKELAACFPVIDGDTVMAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVV 888

Query: 698 SDVICFKICEGLTWIDSAG 716
           S V   +  +  +  +  G
Sbjct: 889 SVVRIAESEDDASAEEDGG 907


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 415/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ +I GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNFIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   ++  
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR EV+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFEVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ ++  T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLELKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 477 --KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D +++ +  GK Y + A  +   S +  G  I  +I+L+  + +
Sbjct: 533 TIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLIGNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K+  ++ +  V  +   
Sbjct: 593 RDTIVIKEFVPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 TKEEILIATHDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 141/441 (31%), Gaps = 29/441 (6%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM---LSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +      +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLELKEKYNDKRRTQIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDN--L 454
           E    I  ED  K   +      +  V  I   + ++ R+          I+ +     +
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTIEDDYAEKII 543

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            A       +     + +N  A EI ++ +       L        E  +     + +  
Sbjct: 544 TASTLDTMMIFTDKGKVYNIRAYEIPDLSKQ--SRGRLIGNIINLSEGEKVRDTIVIKEF 601

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRILLL 566
           + ++ I V I+  G I+              L A+  KE D +     +   T + IL+ 
Sbjct: 602 VPEKEI-VFITKNGLIKKTSLGEFKNINNSGLIAIKIKEDDDIIFVGLIEDVTKEEILIA 660

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           + DG         +       + ++ +     +  +    + +    +L ++  G     
Sbjct: 661 THDGYCTRFLTDTIRPTGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGKRT 720

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              E     R GK  + + + EK   VV        + +  +  N  ++  SI +I  + 
Sbjct: 721 SLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISRIG 780

Query: 683 RGK-GVRLQSYKDGGISDVIC 702
           R   GVR+    D      I 
Sbjct: 781 RATQGVRIMKVADEEKVAAIT 801


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 244/797 (30%), Positives = 393/797 (49%), Gaps = 57/797 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+  +S +   E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   VDSGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D
Sbjct: 65  ELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+     ++I NP +  ++L E I GPDFPTGG I+  R+ I E
Sbjct: 185 GIAVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQIL-GRDGIKE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  K++  
Sbjct: 244 TFKSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P  + L
Sbjct: 304 ISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGE-PTTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
             +L  +L  R   + RR++F ++  + R  I+KGLL+A   +D II +IR+       +
Sbjct: 363 RKMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTSAR 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +     L+  Q DAIL ++LR L  LE  +IKSE D L  +     ++L    +    
Sbjct: 423 EQLQKDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTRKITDYKNILQDKDRINEI 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++ E FS             E+           +I  E   V++++ G+++ + 
Sbjct: 483 ILEELSKIDERFSSPRK--------TEILNLGGGLDDIDLIANERSVVLLTSAGYLKRMP 534

Query: 535 --------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                     S   +    +E D + + +  +  D +LL S  G AY LPA  +   S  
Sbjct: 535 VSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRT 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G     L+ +   + I +      +D+   LL+++  G       S        G   
Sbjct: 595 AKGTPSVQLLPIPREEQITSIVSVESFDNDRYLLMLTKAGFIKRTPLSAFSKIRSNGLIA 654

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGG- 696
           + +   + +  V     GD V +       + F +D  ++  + R  +GV+  + KDG  
Sbjct: 655 INLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDNNELRPLGRTARGVKSMNLKDGDK 714

Query: 697 --ISDVICFKICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGG 735
               DV+   + + L                     + ++     +        L KR G
Sbjct: 715 LVSMDVLTSDLVDQLASLENENDEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAG 774

Query: 736 VGSLVPKGFPRSGKFLS 752
           +G    K   +    + 
Sbjct: 775 MGLRAIKFRIKDDSLVG 791



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 44/263 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +     + +   ++++  G+I+        K  S  L A++ +EGD+L  
Sbjct: 606 IPREEQITSIVSVESFDNDRYLLMLTKAGFIKRTPLSAFSKIRSNGLIAINLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLL---------------- 593
              +   D +L+ S+ G    + L    L  L     G     L                
Sbjct: 666 VRLSKEGDSVLIGSSKGMTIHFRLDNNELRPLGRTARGVKSMNLKDGDKLVSMDVLTSDL 725

Query: 594 ------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLK-- 643
                 ++  +++DI +         +LV S+ G    V  ++     R G     +K  
Sbjct: 726 VDQLASLENENDEDIES--NSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFR 783

Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVI 701
           +  +  + L V   G+ +  V E   ++  + D+I + SR   GVRLQ   DG  +S+V+
Sbjct: 784 IKDDSLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGVRLQRLDDGDHLSEVV 843

Query: 702 CFKICEGLTWIDSAGRSYNRSEN 724
                +    ID + +   + E 
Sbjct: 844 LVPHEQ----IDDSDQLMTKEEE 862


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 239/827 (28%), Positives = 405/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGI +  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGI-IHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F              ++ 
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERK--------TDIV 530

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+ ++         K      SA   KE D ++  L
Sbjct: 531 DARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +   S    G  +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS--------------------YKDGGISDVICFKICE 707
           K + F    I  MSR  KGVR                         D  +S V+   +  
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 79/229 (34%), Gaps = 33/229 (14%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
            + ++       +  G ++ +            L A+   EGD+L           I+L 
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLF 706

Query: 567 STDGKAYTLPAGNLLS----GRG-HGEAIQLLIDLNHNQ----------------DIVTA 605
           S +GKA      ++ +     +G  G  + LL   +  +                 +V+ 
Sbjct: 707 SNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVVSL 766

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HV 661
            V     ++L     G        +     R GK  + + + E+   +   + VTG+  V
Sbjct: 767 VVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEEDV 826

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFKICEG 708
            ++ +   L+   + QI    R  +GV+L    D  +   + C +  + 
Sbjct: 827 ILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDD 875


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/743 (35%), Positives = 445/743 (59%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV++ +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE+++++E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               +  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGG--ISDVICFKICEGLTWIDSAGRSYNR 721
           ++L+F I ++P++S+GKG ++ +      K+G   ++ ++  K  + L ++ S  R    
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715

Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744
             +D+  + G+R   GS + +G 
Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 238/827 (28%), Positives = 405/827 (48%), Gaps = 96/827 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G D+   +
Sbjct: 1   MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L++GQGNFG++DGD  AA RYT
Sbjct: 61  LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E +M ++   +L  +D++ VD+ D Y+     P V P++ PNLL NG +GIAVGMAT++ 
Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A LA  ++P IS ++L+ +I GPDFPTGGI +  R  I+++YR G+G   +
Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGI-IHGRSGIIDAYRTGKGRLHI 239

Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R+ +E +G     +    I+ T+IPYQV K+ LI+ IA+L+ AK+I  + +IRDES +
Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V     R  + ++++ ++F  + +ET F +NM  L  G+ P++M L  ++  ++ H
Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV-------- 416
           R+EV+ RR+ F +     R  +L+GL IA  NID+I+  I+      + +          
Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418

Query: 417 ---------------------------------MVSRFSLTENQVDAILNLRLRSLRKLE 443
                                              +R+ L+ +QV+AIL+++L  L  LE
Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           + ++  E   +L E  ++  +L+        +  E+ ++++ F              ++ 
Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERK--------TDIV 530

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
            A     ++ +I ++ + + +S  G+ ++         K      SA   KE D ++  L
Sbjct: 531 DARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLL 590

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----D 609
              T   IL  +  G+ + L    +   S    G  +  LI+L  ++ +          D
Sbjct: 591 VTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD 650

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +   ++ G    V  S+       G   + ++  + +  V    G+  + +     
Sbjct: 651 ENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEG 710

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQS------YKDG--------------GISDVICFKICE 707
           K + F    I  MSR  KGVR           +                +S V+   +  
Sbjct: 711 KAIRFKEQSIRAMSRVAKGVRGMRVNLLTTIDEEELLDEDGDEVGDDFAVSRVVSLVVAP 770

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +    + +           RGG G +  K   R+G+ + +
Sbjct: 771 KQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKA 817



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 33/229 (14%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
            + ++       +  G ++ +            L A+   EGD+L           I+L 
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLF 706

Query: 567 STDGKAYTLPAGNLLS----GRG-HGEAIQLLIDLNHNQ----------------DIVTA 605
           S +GKA      ++ +     +G  G  + LL  ++  +                 +V+ 
Sbjct: 707 SNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLTTIDEEELLDEDGDEVGDDFAVSRVVSL 766

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HV 661
            V     ++L     G        +     R GK  + + + E+   +   + VTG+  V
Sbjct: 767 VVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEEDV 826

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-SDVICFKICEG 708
            ++ +   L+   + QI    R  +GV+L    D  +   + C +  + 
Sbjct: 827 ILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACVEHDDD 875


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/753 (35%), Positives = 402/753 (53%), Gaps = 32/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   +   YL Y++S I  RA+PD RDG KPV RR++ AM EMG+  G A++KSARIV
Sbjct: 15  VSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSARIV 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+T++
Sbjct: 75  GDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLTRL 134

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE ++  +DE+ VD+   Y+E   EP V P+  P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 135 AEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNITEV 194

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+DNPE +   L+ ++ GPDFPTGG+I+  R  I  +YR GRG   +R    VE
Sbjct: 195 LNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRTGRGSIVMRGVVEVE 253

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           +  R    C+V+ EIPY V K+RLIEKIAEL+  K+I  + DIRDES  D   ++    R
Sbjct: 254 DSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVVELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P ++M  +F+L+ +++ F  N   +  G  P+ + L   L+ +L  R++V+ RR+ F
Sbjct: 314 EAIPRIIMNQLFLLTPLQSSFGYNAVSIVNG-RPETLSLSQTLRVFLGFRKDVVTRRTLF 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
           R++    R  IL+GL  A   IDEIIA+IR     ++ +  +VS F+ +E Q  AIL+LR
Sbjct: 373 RLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSELQAQAILDLR 432

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I++E   + A    ++++L S +     I  E R + E F        R
Sbjct: 433 LQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERFGDG-----R 487

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
           RT        +     +A+I  EP  V +S  G+I+          +        +  KE
Sbjct: 488 RTVIV---PDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGRIGVTLKE 544

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
            D L   L+A   D +L  +  GK Y L    L        G+ +  L+ L+ ++ +   
Sbjct: 545 DDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERVAAI 604

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    LL  + KG       SE     + G     +   +++  V+ +  D  +
Sbjct: 605 LPVRSFEGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRL 664

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF-KICEGLTWIDSAGRSY 719
            V       + F  D I    R  +GVR           V+ F ++ +    + +  + +
Sbjct: 665 LVATRGGMSIRFEADNIRPTGRATRGVRAIRLSPD--DSVVSFEEVSDSDLLLVTTEKGF 722

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +  L  L KRGG G  + K  P +G  ++
Sbjct: 723 GKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVA 755



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 12/216 (5%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                 A L     E + + +  + +G+ +  +           L A   +EGD L   L
Sbjct: 597 PDERVAAILPVRSFEGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVL 656

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
             H   R+L+ +  G +    A N+    G        I L+ +  +V+      +  LL
Sbjct: 657 VLHPDRRLLVATRGGMSIRFEADNIRP-TGRATRGVRAIRLSPDDSVVSFEEVSDSDLLL 715

Query: 616 VVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
           V + KG    V+ +      R GK             +  ++KVT  D + VV +  +++
Sbjct: 716 VTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVAILKVTERDDIDVVTDTGRVI 775

Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
               ++I ++ RG KGV+L S  D     ++C  I 
Sbjct: 776 RIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAIN 811


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 435/750 (58%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M+  EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMMPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/737 (33%), Positives = 394/737 (53%), Gaps = 63/737 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR V
Sbjct: 26  VSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPV 85

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM + 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 145

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++++ VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 146 AAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI++P+++ E+L++Y+ GPDFPTG I++  R    ++Y  GRG   +R++  VE
Sbjct: 206 IDATLALIEDPDLTSEQLIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRSKTRVE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +  + IVV E+PYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R 
Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             P++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ 
Sbjct: 325 ATPEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYL 383

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------- 417
           ++    R  IL GL +A  NIDEI+A IR                               
Sbjct: 384 LRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALIDD 443

Query: 418 -------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L+S ++
Sbjct: 444 PTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRER 503

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+REV++ F+       RRT   E+         + +IE+E + V +++ G+I
Sbjct: 504 IMGIICDELREVRDQFAVP-----RRT---EIVDWSGDMDDEDLIEREDMVVTVTSGGYI 555

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     +S +  KE D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 556 KRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQ 615

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
            S  G G+AI  ++ +     I      D      +  +++  +S G       S+    
Sbjct: 616 SSRTGKGKAIVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATSAGTVRRNRLSDFTNV 675

Query: 635 TRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVR 688
              GK  +K   +    K+      +  D V +V    + + F    +    SR   GVR
Sbjct: 676 KSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPTTDVRVFNSRNSVGVR 735

Query: 689 LQSYKDGGISDVICFKI 705
                +G  ++V+   +
Sbjct: 736 GIKLSEG--AEVVSMSV 750



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
           +  +   L+ ++  G   +    +   + R G+    +   E +       GD + +   
Sbjct: 802 MLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAMKGGEIVATFPVELGDQIMLATS 861

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             + +   +D I   SR   GVR+  +  G   +V+         WI  +G
Sbjct: 862 KGQSIRVPVDGISFRSRSAGGVRV--FNTGKGEEVVSVA------WIAESG 904



 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GK 639
           SGRG G+ +  +       +IV  F  +   ++++ +SKG +  V    I   +R   G 
Sbjct: 829 SGRG-GQGVGAM----KGGEIVATFPVELGDQIMLATSKGQSIRVPVDGISFRSRSAGGV 883

Query: 640 TFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
                   E++  V  +      D  AVV E 
Sbjct: 884 RVFNTGKGEEVVSVAWIAESGEDDETAVVSEE 915


>gi|332878574|ref|ZP_08446294.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683475|gb|EGJ56352.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 837

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 240/770 (31%), Positives = 411/770 (53%), Gaps = 43/770 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M +MG+    A+KK
Sbjct: 5   EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSSRAYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD +VYD++VR+AQ +  RY L+ GQGNFG++ GDS AA RYTEA
Sbjct: 65  SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM + +E +L  +D++ VD + TY++   EP V P++ PNLL NG++GIAVGMAT++  H
Sbjct: 125 RMRKFSEDMLSDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +A IDN +I I++L++YI  PDFPTGGI +   E + E+++ GRG   VRA
Sbjct: 185 NLSEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGI-IYGYEGVKEAFKTGRGRVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   +EV +G  CIVVTE+PYQV  S L++K ++L+   ++  + D+RDESA     +++
Sbjct: 244 KTEFQEV-KGKECIVVTEVPYQVDTSVLLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++ ++F  ++++T F +N   L  G  P+++ L  ++  ++ HR EV++R
Sbjct: 303 FLKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKG-RPELLNLKDLIYHFVEHRHEVVYR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R+ IL+G +      D   + I IIR  DKPK  +++ F LT+ Q +AI
Sbjct: 362 RTDFELRKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L LR + K    Q K E +  LAE   ++ +L   +++   I  E+ E+KE +     
Sbjct: 422 LALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRVEIIKQELLEIKEKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  + +   + MI  + + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSVIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTPLSEYKTQSRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             ++ D L+    +     +L  +  GK + +    +  G     G A+Q LI++  +  
Sbjct: 534 TTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEGSKTAKGRAVQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I             Y S+  L++ + +G        E     + G   + +   +++   
Sbjct: 594 IKAFVSVQNLKDEDYISSNYLIMATKQGIVKKTLLKEYSRPRQNGINAITIKEGDELIEA 653

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
              +G   + +  ++ + + F  D++  + R  +GVR      +   +  +I  +     
Sbjct: 654 KLTSGSSQLMLAVKSGRAIRFGEDKVRAVGRNSQGVRGIDLDTETDEVVGMIAIENPLEE 713

Query: 710 TWIDSAGRSYNRSENDLL-------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           T +  +   Y +               +  RGG G        ++G+ ++
Sbjct: 714 TVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITDKTGQLVA 763



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++ + +G ++        +     ++A+  KEGD L  A     + +++L    G+A   
Sbjct: 615 IMATKQGIVKKTLLKEYSRPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRF 674

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFI-------V 626
               + +   + + ++ +       ++V     ++     +LVVS  G            
Sbjct: 675 GEDKVRAVGRNSQGVRGIDLDTETDEVVGMIAIENPLEETVLVVSENGYGKRSYIDDPET 734

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMS 682
            E+      R GK    +S  +K   +V +     G+ + ++ ++   +  SID +    
Sbjct: 735 HEAVYRITNRGGKGVKTISITDKTGQLVAIKSVAEGEDLMIINKSGIAIRLSIDTLRISG 794

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG 708
           R   GV+L + K       +   + E 
Sbjct: 795 RATQGVKLINIKGKDSIAAVTKVMKED 821


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 240/789 (30%), Positives = 400/789 (50%), Gaps = 64/789 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K
Sbjct: 12  ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPYRK 71

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+
Sbjct: 72  CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYTES 131

Query: 135 RMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP 
Sbjct: 132 RLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LALI +P+I   +L+  I GPDFPTGG I+  R+ I E+Y  GRG   +R
Sbjct: 192 HNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQIL-GRKGIRETYTGGRGSITMR 250

Query: 254 ARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
               +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D 
Sbjct: 251 GVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P +++ +++ L+ ++  F      L  G  P V+ L  +L+ +L  R 
Sbjct: 311 MRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGE-PVVLNLKRMLEVFLDFRI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           E + RR+ + ++  + R  IL+GLL+A  ++D II +IRN       +  +V+   L+E 
Sbjct: 370 ETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQGLVNDHGLSEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++  + I  E+R++KE  
Sbjct: 430 QADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERH 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSV 538
           +       RRT   ++    +      +I  E   V+++  G+++ +           + 
Sbjct: 490 NTP-----RRTEILDLEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFESTSRGTR 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
             +    +  +++++ +  +  D +LL S  G  Y+LPA  +   S    G  +  L+ +
Sbjct: 542 GKAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLPI 601

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I +      ++   +L+++++ G       S        G   + +   + ++ V
Sbjct: 602 PREEQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAFSNIRANGLIAINLEDADSLRWV 661

Query: 654 VKV-TGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI---- 705
                GD V +   N   + F I+   +  + R  +GVR  + +DG    ++   +    
Sbjct: 662 RLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDG--DSLVSMDVLPAE 719

Query: 706 ---------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                                 +G   + +      +        L +R G+G    K F
Sbjct: 720 LADRIAAAGEASDGESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIK-F 778

Query: 745 PRSGK-FLS 752
            R G   + 
Sbjct: 779 RRDGDALVG 787



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 36/247 (14%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +  E++   V+++  G+I+     +        L A++ ++ DSL+ 
Sbjct: 601 IPREEQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAFSNIRANGLIAINLEDADSLRW 660

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGR------------GHGEAIQLLIDLNH 598
              A   D +L+ S +G        +      GR            G       ++    
Sbjct: 661 VRLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDGDSLVSMDVLPAEL 720

Query: 599 NQDIVTA----------FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVS- 645
              I  A                  +LV ++ G    V   +     R G     +K   
Sbjct: 721 ADRIAAAGEASDGESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKFRR 780

Query: 646 SEEKMK-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
             + +  L V    + + +V E   ++    D IP+ SR   GVRLQ    G     +  
Sbjct: 781 DGDALVGLCVMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEVVL 840

Query: 704 KICEGLT 710
              E  T
Sbjct: 841 VPPEAET 847


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 448/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPMVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +    + L +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + +++++  R GK  + + +  ++    ++     D + 
Sbjct: 591 IMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++++GKG ++ +    K     +V+     + +G +  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMSLPKGASLTLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/736 (37%), Positives = 427/736 (58%), Gaps = 22/736 (2%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + +  VDF+  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 121 ISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +AA+ L+DNP+  ++ +L  I GPDFPT   I+  ++ I + Y  GRG  ++RA W  
Sbjct: 181 VADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHK 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           E+       I+++ +P+Q   S++I +IAE + AK++P++EDIRDE+  +  VRIVL P+
Sbjct: 241 ED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM  +F  +D+E  + +NMN++ +   P V  L  +L EWL  RR  + RR 
Sbjct: 296 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R+  +  R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AILNLRL
Sbjct: 356 QHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+Q+++E D L  E+  ++ +L S ++    I  EI+E  + ++        R
Sbjct: 416 RHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP------R 469

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            +        KA  +  M   EP+TV++S  GW+R  K H +D   L +K GD       
Sbjct: 470 MSQLVEREEAKAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPEGLSYKAGDKYLAHAC 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + + G++Y L   +L S R  GE +   + L     I    +     +LL+
Sbjct: 530 GKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEKQELLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRKLLIFS 674
            S  G  FI +  ++IA  + GK  + +    K+     ++     +V      ++LIF 
Sbjct: 590 ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPETLSESTSLLVSLTSAGRMLIFP 649

Query: 675 IDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYNRSENDLLG 728
           +  +P +S+GKG ++ S             V  F I E  +    S  R       DL  
Sbjct: 650 VRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKPEDLQK 709

Query: 729 WLGKRGGVGSLVPKGF 744
           +  +RG  GS +P+G 
Sbjct: 710 FRAERGRKGSQLPRGL 725


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/843 (29%), Positives = 407/843 (48%), Gaps = 111/843 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++++N+    N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G
Sbjct: 1   MTDNNS---SNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                A++KSARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+
Sbjct: 58  NHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE+RM +VA  +++ +D++ V F   Y+  + EP V PS FPNLL NG+ GIAV
Sbjct: 118 AAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A    +DN +I I  LLE + GPDFPT GII+     I  +Y  
Sbjct: 178 GMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R  +E +G G   I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES
Sbjct: 237 GRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++   +     + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  ++
Sbjct: 297 NKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFV 355

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
           + R  V+  R+ + +     +  IL GL IA  NIDEII II+    P            
Sbjct: 356 SFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSW 415

Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 + S TE Q  AIL +RL+ L  +E+ +++ +L NL  E
Sbjct: 416 DALNILPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATE 475

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +  ++L S ++    +  E+ +VKE F+        R T  E    D+    + +I++
Sbjct: 476 ITEYLNILGSRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQR 527

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V ++  G+I+          K      S L  ++ D         T   +L  S  
Sbjct: 528 EEMVVTVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNI 587

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKG 621
           G+ Y+L    L   + +G G  +  ++ L  ++ I                 ++  ++KG
Sbjct: 588 GQVYSLKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKG 647

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
           N    +  +       GK  +++  ++K+  V     D H+ +  ++ K L F ++ +  
Sbjct: 648 NIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRV 707

Query: 681 -MSRGK-GVRLQSYKDGGISDVICFKICEGLT---------------------------- 710
             SR   GVR     +     VI   + +G+                             
Sbjct: 708 IKSRTSDGVRGMRLAED--DSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNS 765

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +      + +  +     +  R G G +      ++G 
Sbjct: 766 EELGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDINDKTGL 825

Query: 750 FLS 752
            + 
Sbjct: 826 VVG 828



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 78/281 (27%), Gaps = 64/281 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L  +  +++  V                                        
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              D + ++  + KL+   ++ +    R   GV L    DG
Sbjct: 833 KMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDG 873


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 238/790 (30%), Positives = 396/790 (50%), Gaps = 61/790 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 135 ESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PVLLTLRKMLQVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R + + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +     LT
Sbjct: 373 RVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                     RRT   ++    +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 KHCLP-----RRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I    +   +D    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYK-------------- 693
            V   V GD V +       + F +  +++  + R  +GVR  + +              
Sbjct: 665 WVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVE 724

Query: 694 ----------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
                     D     V    + +G   + ++     +        L KR G+G    K 
Sbjct: 725 LADQVAKSLEDDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIK- 783

Query: 744 FPRSGK-FLS 752
           F R G   + 
Sbjct: 784 FRREGDELVG 793



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           ++ + +  + T  V D    +LV S+ G    V  ++     R G     +      +++
Sbjct: 733 LEDDPDDSVETVVVSD-GPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDEL 791

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKIC 706
             +  +  G+ + +V E   ++  S D+IP+ SR   GVRLQ    G  +S+V+     
Sbjct: 792 VGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPD 850



 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            DS++  +       +L+ S  G    +P       +  G  ++ +       ++V   V
Sbjct: 738 DDSVETVVV-SDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDELVGLRV 796

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
                +LL+VS +G        +I   +R   G    ++ + +++  VV V  D
Sbjct: 797 LGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPD 850


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 244/735 (33%), Positives = 389/735 (52%), Gaps = 60/735 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G      ++KSAR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +++D V+F+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+NP++  E L++YI GPDFPTGG+++  R    ++Y  GRG   +RA+  V
Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRV 253

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+ +IE+IAE    KRI  +  ++DES  +   V+    R
Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELKR 313

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 314 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLHRFLSLFIVFREEVVARRTAF 372

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  +L GL +A  N+DE++A IR                              
Sbjct: 373 ELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALID 432

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L +L   ++  EL +L  + ++  ++L S +
Sbjct: 433 DPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRE 492

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+REV+++F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 493 RIMQIISDELREVRDLFAVP-----RRTQIVDWSG---DMEDEDLIEREDMVVTVTSGGY 544

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS +  K+ D +     A+T  ++L  +T G  Y L    L 
Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLP 604

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G+      S+   
Sbjct: 605 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTN 664

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQ 690
             R GK  + +    ++         D V +V ++ + + F   ++      +  GVR  
Sbjct: 665 VMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGI 724

Query: 691 SYKDGGISDVICFKI 705
                G   V+   +
Sbjct: 725 RL--LGNDRVVSMSV 737



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 16/110 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK----VTGDHVAVVG 665
           +   +L +++KG   +    +     R G     +    +   VV        D + +  
Sbjct: 788 AENLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMDKGMRGGTVVASFPVTLEDQIMLAT 847

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +      +P M         S++      V  F    G   +  A
Sbjct: 848 SKGQSIR-----VPVMG-------ISFRSRSAGGVKVFNTGTGEEVVSVA 885


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 247/826 (29%), Positives = 401/826 (48%), Gaps = 109/826 (13%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I N +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRNDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTE RM ++A  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D PE  I++L+  +  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +G+      I++ EIPYQV K++L+EKI EL+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGV 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            D+RDES +    V+    R+ + ++++  ++ L+ ++  F +NM  L  G+ P+++ L 
Sbjct: 299 SDLRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDE+I +I+      + K 
Sbjct: 358 QILAEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKE 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            ++SR                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLSRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I  +  N++A+      +L   ++    I  E+ E K  F        RR+  
Sbjct: 478 TGLDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDE-----RRS-- 530

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
            E++        + +I +  + V +++ G+I++         +       A   K+ D +
Sbjct: 531 -EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFI 589

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAF 606
           +    A+T D ++  +  GK + +    L  G     G  I  +I L   +    I+   
Sbjct: 590 ETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVR 649

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
            +     +   +++G    V+ S       +G   + +   + +    + +G D + +  
Sbjct: 650 EFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFS 709

Query: 666 ENRKLLIFSI--------------------DQI--------PEMSRGK-GVR-------- 688
              K + F+                     D +          +  GK GVR        
Sbjct: 710 NLGKAIRFNEYWEKSGNEEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGG 769

Query: 689 --LQSYK-DGGISDVICFKICE---GLTWIDSAGRSYNRSENDLLG 728
                   DG I  +I F        L  + +    Y +       
Sbjct: 770 LRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADY 815



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 48/192 (25%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 634 IQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYL 693

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A     +D I+L S  GKA     Y   +GN                          L
Sbjct: 694 VGAAQTSGSDDIMLFSNLGKAIRFNEYWEKSGNEEAEDADIETEISDDLEDETADNENAL 753

Query: 581 LSGRGHGEA------IQLLIDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 754 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIA 813

Query: 630 EIIANTRKGKTF 641
           +    T+  K  
Sbjct: 814 DYSRKTKADKAI 825


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 242/725 (33%), Positives = 384/725 (52%), Gaps = 61/725 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+     ++KSA+ 
Sbjct: 25  SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ V+F D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EI YQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++F
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLTYFIDFREDVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  NIDE++A IR+                             
Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALID 442

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S +
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + I+ E+ EVK+ F+       RRT   E+         + +I +E + V +++ G+
Sbjct: 503 RIMSIISDELAEVKDQFAVP-----RRT---EIVDWSGDMDDEDLIAREDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     +S +  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +      +   +    D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGV 734

Query: 688 RLQSY 692
           R    
Sbjct: 735 RGIKL 739


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/700 (35%), Positives = 382/700 (54%), Gaps = 60/700 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KK
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA I+N EI+I++L++YI GPDFPT  + +  R+ IV++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAAL-ISGRKGIVDAYKTGRGKIYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+VTEIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L+ G+ PQ+  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R+ F ++    R  IL+GL +A  NIDEII +IR    P                     
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAML 423

Query: 417 -------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                                 ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E
Sbjct: 424 ERAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEE 483

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S ++    I  E+  V++ F  +     RRT   E++ A      + +I +
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIAR 535

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   K+ D ++  L A+T D IL  ST 
Sbjct: 536 EDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTR 595

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624
           GK Y L    L   S    G+ I  ++ L   + I        +     + + +  G   
Sbjct: 596 GKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTVK 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
               ++       G   + +  ++ +  V    G++  ++
Sbjct: 656 KTPLNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIML 695



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKL 670
           ++ +S  G       S+  +  R  KGK+  K+  E+ + +L+V  T D++       K 
Sbjct: 539 VVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKT 598

Query: 671 LIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSEN 724
               + Q+P  SR  +G   V +   ++G     I    +  E      + G    +   
Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFIFMATGDGTVKKTP 658


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 433/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYTSP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 249/753 (33%), Positives = 399/753 (52%), Gaps = 32/753 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +   ++  YL Y++S I  RA+PD+RDG KPV RR++ AM EMG+  G  ++KSARIV
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD+ VRL QPF  RYPLI GQGNFG++DGD+ AA RYTE R+  +
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +E ++  ++E+ V+F   Y+E   EP V P++ P LL NG++GIAVGMAT+IP HN+ EI
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S++ LL  + GPDFPTGG+I+  R  I  + R GRG   +R    +E
Sbjct: 190 IDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVADIE 248

Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E  R     I++ EIPYQV K+RLIE+IAEL+    +  + DIRDES  D   V+    R
Sbjct: 249 ESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKR 308

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +P +++  ++  + ++T F  N   L     P ++ L   L  +L+ R++V+ RR+ F
Sbjct: 309 DANPPVVLNRLYAQTPLQTSFGYNFVALVNQ-RPMILSLREALAHFLSFRQDVVTRRTLF 367

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
           R++    R  IL+GL  A   +D+IIA+IR+    D  +  +V +F+ +E Q  AIL++R
Sbjct: 368 RLRKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMR 427

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  LE  +I +E + +      ++ +L S  +    I  E   ++E +  +      
Sbjct: 428 LQRLTALERDKIDAEYEEVRVLILGLEEILGSRSRLMAVIREEFMALRENYGDARKTR-- 485

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKE 547
                 +   D     ++MI  +P  + ++ +G+I+          +      S +  KE
Sbjct: 486 ------IVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKE 539

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D++ I L     + IL  +  GK Y + A  +        G+ I+  + L   + +   
Sbjct: 540 DDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPIRGFLPLAPEEKVTRM 599

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                ++    L+ V+  G       S   +  + G   L +   +++  V+    D HV
Sbjct: 600 LNVASFEGERSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVAEADSHV 659

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            V       ++F I ++ E  R   GVR    + +  ++D       + +  +    + Y
Sbjct: 660 LVATRRGMAILFPIHEVTEQGRTASGVRAIRLREEDRVADAEIVTETDPVAVVT--EKGY 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  +        RGG+G  + +G  + G  +S
Sbjct: 718 GKRLDVAKFRHQHRGGMGLKISRGAEKIGAVVS 750



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   L  A  E E   V ++  G I+     +        + AL  +EGD L   L
Sbjct: 592 PEEKVTRMLNVASFEGERSLVFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRLAQVL 651

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A     +L+ +  G A   P   +         ++  I L     +  A +   T  + 
Sbjct: 652 VAEADSHVLVATRRGMAILFPIHEVTEQGRTASGVRA-IRLREEDRVADAEIVTETDPVA 710

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKL 670
           VV+ KG    ++ ++     R G   LK+S   +     + LV     D + ++      
Sbjct: 711 VVTEKGYGKRLDVAKFRHQHRGGMG-LKISRGAEKIGAVVSLVKAGNTDDLTIITSKGVT 769

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVIC 702
                +++  M R  +GV +    D    +S V+ 
Sbjct: 770 NRVQANELRTMGRSAQGVIVMRLADDDTIVSAVVS 804


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+ +      +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDNYRAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/753 (36%), Positives = 434/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+ ++ ++L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQLMAILESKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T  +  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 ++  + ++ SS G  F+     +    + GK  L +++   +    +V     D
Sbjct: 590 QVLASGENNARFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL  +   +PE+ +GKG +L      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAITASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R  + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARVMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 267/748 (35%), Positives = 434/748 (58%), Gaps = 23/748 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +  +  E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII++MSE+GL+ 
Sbjct: 2   TKEISYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSMSELGLNA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE++++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT GIAVGM
Sbjct: 122 AMRYTESKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGTMGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ EI +A + L++NP  ++ +LL  I GPD+PT   I+  +  IV+ Y  GR
Sbjct: 182 ATDIPPHNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  EE       IV+  +P+Q   S++IE+IA  +  K++PL+EDIRDES  
Sbjct: 242 GSIKMRAVWKKEE-----NEIVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +  +RIVL P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL
Sbjct: 297 ENPIRIVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLVTILTEWL 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR S+R+  +  R+ IL GL+ A+LNID++I IIR++D+PK  ++ RF+LT 
Sbjct: 357 HFRRTTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEPKAELIERFALTG 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAILNLRLR L KLEE+Q+++E   L  E+ ++  LL S ++  N I  EI++  + 
Sbjct: 417 IQADAILNLRLRHLAKLEEHQLQAEQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKA 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RR+   E +   KA  +  +   E ITV++S +GW+R  K H +D+  L +
Sbjct: 477 FVSP-----RRSPLIERAE-AKAIAESDLTPTEDITVILSEKGWVRCAKGHDIDVQGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + GD         +   ++ L + G+AYT+    L S R  GE +   I L     I   
Sbjct: 531 RAGDGYLAHTRGRSNQPVVFLDSTGRAYTIDPTTLPSARSQGEPLTSKISLPEGASIQQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VA 662
            + +   K+L+ S  G  FI   +++I+  + GK  + +    K+ +   +       + 
Sbjct: 591 LMANPESKMLMASDAGYGFICTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAG 716
            +    ++L+F + ++P +++GKG ++ +      K+G         I    + +  +  
Sbjct: 651 AMSTINRMLVFPLTELPTLTKGKGNKIMNIATQAAKEGKELLARLLLIKSNQSLVFMAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           R       D+  + G+R   G+ + +G 
Sbjct: 711 RKITLKPADIDHYRGERARKGTQLVRGL 738


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 263/742 (35%), Positives = 438/742 (59%), Gaps = 23/742 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V+ + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KK
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ++++++AE++L  + +  VD++  ++    EP   P++ P++L NGT GIAVGMAT IP 
Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA++ L++NP+ S+ +L+  + GPD+PT   I+  +  I + Y  G+G  ++R
Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311
           A W  E+       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RI
Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+ P++  +D + LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWL  RR  
Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR ++R+  I  R+ IL+GL+IA+LNIDE+I IIRNED+PK  +++RF+L+E Q +AI
Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LNLRLR L KLEE++++ E   L  E++++   L S ++    I  EI+   + F+    
Sbjct: 423 LNLRLRHLAKLEEHELQEEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RR+   E +   KA  +  +   E +TV++S +GW+R  K H +D+  L ++ GD  
Sbjct: 481 ---RRSPLVERAE-AKAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               H  +   ++ L + G+AY L   +L S R  GE +   I L     +    + +S 
Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
            K+L+ S  G  FI    ++++  + GK  + ++   K+     +  +    +  +    
Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTWI-DSAGRSYNRS 722
           ++L+F I ++P++S+GKG ++ +      K+G         +    + +  S  R     
Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFVSGKRKITLK 716

Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744
            +D+  + G+R   GS + +G 
Sbjct: 717 PSDIDNYRGERARKGSQLVRGL 738


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/825 (30%), Positives = 406/825 (49%), Gaps = 86/825 (10%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             +++    +  V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+
Sbjct: 35  PSTHTMEADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHEL 94

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL  GA +KKSARIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGD
Sbjct: 95  GLTQGANYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGD 154

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARMT++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIA
Sbjct: 155 SAAAMRYTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIA 214

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E  +A +A ID+P+I I+ L++++  PDFPTGGI +     + E+Y 
Sbjct: 215 VGMATKIPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGI-IYGYAGVYEAYH 273

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+   EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDE
Sbjct: 274 TGRGRVVMRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDE 333

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  D   ++    +  + +++   ++  S ++  F +NM  L  G  PQV+ L   ++ +
Sbjct: 334 SDRDGLRIVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALV-GGRPQVVTLKDAIRHY 392

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL- 423
           + HR E++ RR+ + +     R  IL+GL +A  ++D +IAIIR+         +  +  
Sbjct: 393 VDHRHEIVVRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGR 452

Query: 424 -----------------------TENQ----------------------------VDAIL 432
                                   E Q                             +AIL
Sbjct: 453 YPDALSDDDLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAIL 512

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LRL  L  LE  +I  E ++++ +  +   +LNS  ++   I  E+  VKE F      
Sbjct: 513 RLRLSRLTGLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE--- 569

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
              R T  + +  D   + + +IE++ + V I+N+G          R+     V +    
Sbjct: 570 ---RRTEIDYTGGD-DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTG 625

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602
            +E D ++     H+ D +LL +  G+ + L    +  G     G +I+ LID++ +  +
Sbjct: 626 KREDDFIEHLYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRV 685

Query: 603 VTAF----------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
                          + ++  +L  + +G                G   +K+   +++  
Sbjct: 686 RAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIE 745

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC--E 707
                GD+ V V     + + F       M R  +GVR      D  +  +I       +
Sbjct: 746 ASLTGGDNTVVVASSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHD 805

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            L  +  A   Y +        +  RGG G +      R+G  +S
Sbjct: 806 DLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVS 850



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 21/205 (10%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G ++        +  S  +  +   EGD L  A      + +++ S+ G+A  
Sbjct: 707 VLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASSGGRAVH 766

Query: 575 LPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEE 628
              G+    R  G   + +  ++L  +Q++V              +L ++  G       
Sbjct: 767 FDEGD---ARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGKRTAL 823

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENRKLLIFSIDQIPEMSR- 683
           S+     R GK  + ++  ++   +V + G    + + V+ E   ++   + +I  M R 
Sbjct: 824 SDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRN 883

Query: 684 GKGVRLQSYKDGG-ISDVICFKICE 707
            +GV++   KDG  I+DV      +
Sbjct: 884 TQGVQVIDLKDGDAIADVTRVADTD 908


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 246/802 (30%), Positives = 399/802 (49%), Gaps = 62/802 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           VD+ ++  +   + +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   VDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D
Sbjct: 65  ELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD 124

Query: 123 GDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +   A+I NP    ++L E I GPDFPTGG I+  R+ I E
Sbjct: 185 GIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQIL-GRDGIKE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +++ G+G   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  KR+  
Sbjct: 244 TFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRLDG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F ++ ++  F  N+  L  G  P  + L
Sbjct: 304 ISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGE-PTTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
             +L  +L  R E + RR+SF ++  + R  I+KGLL+A   +D II +IR+       +
Sbjct: 363 RKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNSAR 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             + +   L+  Q DAIL ++LR L  LE  +IKSE D L  +     ++LN  ++    
Sbjct: 423 EQLQNDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNILNDKERINEI 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++ E FS             E+           +I  E   V+++  G+++ + 
Sbjct: 483 ILEELSKIDERFSSPRK--------TEILNLGGGLDDIDLIANERSVVLLTTAGYLKRMP 534

Query: 535 --------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                     S   +    ++ D +K+ +  +  D +LL S  G AY LPA  +   S  
Sbjct: 535 VSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRT 594

Query: 585 GHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G     L+ +   + I   V+   +D+ C LL+++  G       S        G   
Sbjct: 595 AKGTPSVQLLPIPREEQITSLVSVDSFDNECYLLMLTKAGFIKRTPLSAFSKVRSNGLIA 654

Query: 642 LKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGG- 696
           + +   + +  V     GD V +       + F +D  ++  + R  +GV+  + K+G  
Sbjct: 655 INLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDTNELRPLGRTARGVKSMNLKEGDK 714

Query: 697 --ISDVICFKICEGLT------------------------WIDSAGRSYNRSENDLLGWL 730
               DV+   + + L                          + ++     +        L
Sbjct: 715 LVSMDVLSCDLVDQLANLEEEDIENENEEDLESKSSNGPWILVASAFGLGKRVPVTKFRL 774

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
            KR G+G    K   +    + 
Sbjct: 775 QKRAGMGLRAIKFRIKDDSLVG 796



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 43/250 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                   + +     + E   ++++  G+I+        K  S  L A++ +EGD+L  
Sbjct: 606 IPREEQITSLVSVDSFDNECYLLMLTKAGFIKRTPLSAFSKVRSNGLIAINLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              +   D +L+ S+ G    + L    L         ++ + +L     +V+  V    
Sbjct: 666 VRLSTEGDSVLIGSSRGMTIHFRLDTNELRPLGRTARGVKSM-NLKEGDKLVSMDVLSCD 724

Query: 612 ----------------------------CKLLVVSSKGNAFIVEESEIIANTRKG--KTF 641
                                         +LV S+ G    V  ++     R G     
Sbjct: 725 LVDQLANLEEEDIENENEEDLESKSSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRA 784

Query: 642 LK--VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-I 697
           +K  +  +  + L V   G+ + +V E   ++  + D+I + SR   GV+LQ   DG  +
Sbjct: 785 IKFRIKDDSLVGLKVLGEGEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDHL 844

Query: 698 SDVICFKICE 707
           S+V+     +
Sbjct: 845 SEVVLVPHEQ 854


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/754 (33%), Positives = 401/754 (53%), Gaps = 27/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  + +   ++  YL YA+S I  RA+PD +DG KPV RRI++AM E+GL     ++KS
Sbjct: 9   KVLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGE +GK HPHGD ++YD++VR+AQ F  RYPL+ GQGNFG+IDGD  AA RYTEAR
Sbjct: 69  ARIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ + E +L+ ++ED VD+   ++E   EP+V PS  PNLL NG+SGIAVGMAT+IP HN
Sbjct: 129 LSPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHN 188

Query: 196 VQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A   LID   ++ +  ++E + GPDFPTGG  +  RE I+ +YR GRG   +R 
Sbjct: 189 LSEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGG-TITGREGIINAYRTGRGKIVLRG 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E++ RG   ++VTEIPY V K  LIE IA  +    +  + D+RDES  D   V+ 
Sbjct: 248 RVSIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVI 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DP L+++ ++  + ++T F +    L  G VP+ + L  +LK +L HRR+V+ R
Sbjct: 308 ELQRDADPHLVLKQLYSRTPLQTTFGVINLALVDG-VPRELGLIELLKIFLDHRRDVVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           R+++R++  + R  I++GL+ A   IDEIIA+I+     +      +  F  TE Q  AI
Sbjct: 367 RTNYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLMDNFGFTELQAQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL+ L  LE  +++ EL +LL + E   S+L +     + +  E+ E+K  +  +  
Sbjct: 427 LDMRLQRLTNLERSKLEEELRHLLKDIEMYHSILENPSVLDSVVKEELTELKRQYGDARK 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
                    E+           +I +E I VV+S  G++R        L     K     
Sbjct: 487 --------TEIVDELVEVADDELIPEEDIVVVLSKDGYLRRASLGDYHLQGRGGKGIKGL 538

Query: 547 --EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDIV 603
             + D +++     T   I L ++ G+ + +    L   + G G+ +     L  N+ +V
Sbjct: 539 KQKDDEVEMFAATTTHHDIFLFTSKGRVFAIKGYLLPEPKNGKGKHVSSFFTLEENERVV 598

Query: 604 TAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                       +   + +G A  ++ SE+   TR G+  + +   + +  V   +G D 
Sbjct: 599 AIKEDTMHGARFVFFATERGIAKRLDVSELANLTRAGRRVITLDDGDFIARVRFTSGEDE 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           +  V    + L  S  +   M R  +GVR     +  +  V C  + EG+  +  + +  
Sbjct: 659 LLFVSAKGQALRTSEQEFRPMGRQARGVRAIRLSESDVL-VGCEPLQEGMAILFISEKGV 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +  +     L  RGG G    +   R+G  + +
Sbjct: 718 GKRTSFDEFPLHHRGGSGVRAMRLSSRTGSLVGA 751



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 13/231 (5%)

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS------VDLS 541
           K+       + F          +++  +         + RG  + L              
Sbjct: 578 KNGKGKHVSSFFTLEENERVVAIKEDTMHGARFVFFATERGIAKRLDVSELANLTRAGRR 637

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            +   +GD +         D +L +S  G+A                 ++  I L+ +  
Sbjct: 638 VITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPMGRQARGVRA-IRLSESDV 696

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVT 657
           +V          +L +S KG        E   + R   G   +++SS     +       
Sbjct: 697 LVGCEPLQEGMAILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLSSRTGSLVGAWSVTE 756

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKIC 706
            D V +V    ++   ++  +P +SR   G  L     G  ++D+   +  
Sbjct: 757 DDEVMIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRDD 807


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFASGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         S    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IAE + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYA------SSRMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++L+F    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLLFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 251/736 (34%), Positives = 388/736 (52%), Gaps = 61/736 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRI++ M E G     +++KSAR 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP+++ E+++E+I  PDFPTGG+I+  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLIL-GRSGARKAYLEGRGSVIVRAKTVV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV KS +I++IAE    KRI  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLRAFLVAFVDFREEVIARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------- 418
            ++    R  IL GL +A  NIDE++A IR                              
Sbjct: 383 ELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLID 442

Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV++ F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 503 RILQIIRDELTEVRDQFAVP-----RRTQIVDWSG---DMDDEDLIEQEDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     LS++  KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 555 IKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     +      D         +++  +S G+      S+   
Sbjct: 615 LGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFTN 674

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRL 689
               GK  +K+  E  + +  ++    D V ++ ++ + + F    +     R   GVR 
Sbjct: 675 VKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDVRVFKGRDSTGVRG 734

Query: 690 QSYKDGGISDVICFKI 705
              +  G   V+   I
Sbjct: 735 IRLQ--GDDKVVSMSI 748



 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDH 660
           A +  +   +L +S+KG+  +    +     R G     +        +     V   D 
Sbjct: 794 AAMSAAENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMDKAMRGGPLVTSFPVEMSDQ 853

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           + +V    + +   ++ I   SR  G             V  F   +G T +  A
Sbjct: 854 IMLVTSTGQSIRVPVEGISFRSRSAG------------GVKVFDTGKGETVVSVA 896


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 257/794 (32%), Positives = 422/794 (53%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVK 655
            I+       +D +  L   +  G       SE       G   + +   +++   ++V+
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 656 VTGDHVAV-----------------------------------VGENRKLLIFSIDQIPE 680
              D + V                                   V +    + F + ++ E
Sbjct: 657 RDEDEIFVSGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         S    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|332299199|ref|YP_004441121.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
 gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 240/766 (31%), Positives = 400/766 (52%), Gaps = 28/766 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     +  VS+   +++ Y+ Y++S I  RA+PD+RDG KPVHRRI++AM+E G
Sbjct: 1   MEEIRTPEGGTLIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +    +K A +VG+V+G+ HPHGD SVYD++VRL Q F  RY  I  QGNFG IDG  
Sbjct: 61  LHYSGKTRKCATVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAAYRYTEA+M+ VAE ++  + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 AAAYRYTEAKMSTVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EIC A  A IDNP++S+E+L   + GPDFPTGGII   R  I ++Y+ 
Sbjct: 181 GMATNMPPHNLREICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIF-GRRGIKQAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +R R+ +E   RG   I+ TEIPYQV+   L ++I EL   K I  +E + D S
Sbjct: 240 GRGKILIRGRFNIEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGS 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A D   ++    R     +++  +F  + +++ F +    L  G  P+++ L  +++ ++
Sbjct: 300 AGDDVRIVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVKG-RPEILTLKDLIRYFV 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            HR+EV+ RR+ + ++  + R  IL+ L++A  NIDE+I IIR        K  ++ RF 
Sbjct: 359 EHRQEVVTRRTRYDLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMERFE 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E   +
Sbjct: 419 FDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKDLLAHPEKILALIKEETESL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           +E +        RRT    V+   +    + +I++E + ++ISN G+I+ +   +     
Sbjct: 479 REKYGD-----DRRTDI--VADEVEQINIEDLIKEEEMVILISNLGYIKRIPLTAYKAQG 531

Query: 543 LHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
              K        E D +     A T D I+ ++ +GK+Y L    +        G  I+ 
Sbjct: 532 RGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSRGAHIKG 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ ++ N++I T      +     L + ++ G    V+ S+      +G   +++   +K
Sbjct: 592 LLTVSPNEEITTVVSLKEFSDEQYLFMATAAGVVKKVQTSQFSNAKTRGIIAIRLDEGDK 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +   +   G D + ++    + L  +   +  M R G+GV       G        ++  
Sbjct: 652 LVTAILSGGTDELILISRRGQALRITETSVRPMGRAGRGVGGLKLAQGD-ELAGALRVES 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +    + + +  +        RG  G  +     ++G+ + +
Sbjct: 711 DACMMLLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVSDKTGEIVGT 756



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 75/188 (39%), Gaps = 12/188 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E    + +  G ++ +++          + A+   EGD L  A+ +  TD ++L+S  G
Sbjct: 612 DEQYLFMATAAGVVKKVQTSQFSNAKTRGIIAIRLDEGDKLVTAILSGGTDELILISRRG 671

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +A  +   ++      G  +  L  L    ++  A   +S   +++++ KG    V+  E
Sbjct: 672 QALRITETSVRPMGRAGRGVGGL-KLAQGDELAGALRVESDACMMLLTEKGFGKRVDFDE 730

Query: 631 IIANTR-KGKTFL---KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
             A+ R  G   +      + E +  +     D +  +    K L  + + + +  R   
Sbjct: 731 FAAHGRGTGGQRIYGVSDKTGEIVGTINAADSDEIVCITSQGKSLRVAANSVTKQGRSAS 790

Query: 686 GVRLQSYK 693
           GVR+ +  
Sbjct: 791 GVRVFNID 798


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/753 (36%), Positives = 435/753 (57%), Gaps = 21/753 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P L DG KPV RRII AMSE+G
Sbjct: 1   MTDLTRPTFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T +AE++L  + +   D+   ++    EP   P++ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A L L+D+P+ ++ +L E+++GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  R RA +  E        IV+  +PYQV  S++IE+IA+ + AK++P LEDIRDE
Sbjct: 241 TGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S     VR+VL P++  +D + LM  +F+ +D+E  + +N+NV+ +   PQV  L  +L 
Sbjct: 296 SDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R + + RR + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+
Sbjct: 356 EWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFA 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL  +LR L +LEE +I+ E + L  E+E+I S+L S  +    I  E+   
Sbjct: 416 LSEEQAEYILETKLRQLARLEEMKIRGEQEALAKEREQILSILGSKTKLKKLIKDELTAD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F  +      R +      A +A  +  M+  EP+TVV+S +GW+R+ K H VD + 
Sbjct: 476 AKKFGDA------RRSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + +++GD L  A+ + +T  +  L +DG+AY+     L S RG+GE +            
Sbjct: 530 MSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                 ++  + ++ SS G  F+     +    + GK  L +++   +    +V     D
Sbjct: 590 QVLASGENNARFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTD 649

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
            +  V     LL  +   +PE+ +GKG +L      K G    V    +  G T +  +G
Sbjct: 650 RIVAVTSAGNLLAITASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSG 709

Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            R  + S  DL  ++G R   G+L+P+G+ +  
Sbjct: 710 ARVMSLSFKDLDTYVGARASRGALLPRGWQKVD 742


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 248/738 (33%), Positives = 386/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     A++KSAR 
Sbjct: 25  QISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKAYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             +A L LI+NP+++ E L+EYI GPDFPTGGI++  R    ++Y  GRG    RA+   
Sbjct: 205 AIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVITRAKTHT 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I+++EIPYQV KS +I++IAE    K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  +L  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLRRFLTSFLDFREDVVIRRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR--------------- 420
            +     R  +L GL +A  N+DE++A IR        +  +++R               
Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEILPFILLID 442

Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL+ L  + ++  ++L S +
Sbjct: 443 DPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLAILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ E K +F+       RRT   + S        + +IE + + V ++  G+
Sbjct: 503 RIMQIIRDELAECKTLFAVP-----RRTQIVDWSG---DMEDEDLIESQDMVVTVTETGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     +S    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     I      D         +++  +S G       S+   
Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVS-SEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K       ++L+   +    D V +V  + + + F+   +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASLGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R    K  G   ++   +
Sbjct: 735 RGIKLK--GDDKIVSMSV 750



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 47/157 (29%), Gaps = 9/157 (5%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL- 593
             S+ +  +  K  D +                 D +A  L     ++G      I+   
Sbjct: 729 RASLGVRGIKLKGDDKIVSMSVIR----HFKAEADERAAYLKMRRAMAGLADDAEIEDED 784

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKM 650
           +   +      A +  +   +L +++ G+  +    +     R G     +       ++
Sbjct: 785 VPAGNITQERYAEMSAAENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMDKAMRGGEI 844

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
                V   D + +     + +   ++ I   SR  G
Sbjct: 845 VASFPVERDDQIMLATSKGQSIRVPVEGISFRSRSAG 881



 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +       G  +  +       +IV +F  +   ++++ +SKG +  V    I   +R 
Sbjct: 820 HDYPLRGRGGMGVTAMDKAMRGGEIVASFPVERDDQIMLATSKGQSIRVPVEGISFRSRS 879

Query: 638 --GKTFLKVSSEEKMKLVVKVTGD 659
             G         E +  V  +   
Sbjct: 880 AGGVKVFNTGKNEIVVSVAYIADQ 903


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/750 (36%), Positives = 434/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYA------SSRMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/734 (36%), Positives = 438/734 (59%), Gaps = 25/734 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR V
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD++ Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTE+++++
Sbjct: 61  GDVLGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE++L  + +  VD++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 121 MAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A++ L+DNP  S+  +L+ + GPD+PT   I+  R  I + Y  GRG  ++RA W  
Sbjct: 181 LAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKR 240

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316
           EE       IV+  +P+Q   S++IE+IA  +  K++P+++DIRDES  +  +RIVL P+
Sbjct: 241 EENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPR 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           +  +D D LM+ +F  +D+E  + +NMN++ +   P V  L  IL EWLA RR  + RR 
Sbjct: 296 SNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRRL 355

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +FR+  I  R+ IL+GL+IA+LNIDE+I IIRNED PK  +++RF L++ Q +AILNLRL
Sbjct: 356 NFRLDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNPKAELIARFQLSDEQAEAILNLRL 415

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L KLEE+++K+E   L  E+E +  +L S ++  N I  EI    + F+       RR
Sbjct: 416 RHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-----RR 470

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
           +   E +   KA  +  +   EP+TV++S +GW+R  K H +D+  L +K GDS     +
Sbjct: 471 SPLVERAE-AKAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSYLAHAY 529

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +   ++ + + G++Y L   +L S R  GE I   I L     +    + + + K+L+
Sbjct: 530 GKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEESRKVLM 589

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVV--GENRKLLIF 673
            S  G  FI +  ++++  + GK  + ++   K+     +  G+   +V      ++L+F
Sbjct: 590 ASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVF 649

Query: 674 SIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            + ++PE+S+GKG ++ +        +   +S ++       L ++ S  R       D+
Sbjct: 650 PVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SGKRKITLKPTDI 708

Query: 727 LGWLGKRGGVGSLV 740
             + G+R   G+ +
Sbjct: 709 EHYRGERARKGTQL 722


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 233/783 (29%), Positives = 388/783 (49%), Gaps = 56/783 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G      + K 
Sbjct: 30  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 90  SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 150 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+PE S E+LL      I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 210 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 268

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 269 MRAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQ 327

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 328 RLVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 386

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     D+ +  ++    + + Q
Sbjct: 387 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 446

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+ E+ + + 
Sbjct: 447 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 506

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V +++ G+I+                
Sbjct: 507 D-----DRRTRILPFSG---EMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 558

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  + +G+ Y +    +  G     G+ +  L+ L 
Sbjct: 559 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDSKGQHVANLLQLG 618

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------- 646
            ++ I        YD    L++ +  G       +E  +  + G   +++          
Sbjct: 619 PDEKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRTD 678

Query: 647 --------EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK- 693
                    +++         D + VV +    + FS D   +  M R   GV+   ++ 
Sbjct: 679 EEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQAMKFRG 738

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             G   ++   +    +    +      + +        L  R G G          G  
Sbjct: 739 QAGEDLLLSMDVVPAESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGSL 798

Query: 751 LSS 753
           + +
Sbjct: 799 VGA 801


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/848 (30%), Positives = 401/848 (47%), Gaps = 108/848 (12%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N  +   ++  +   + +   +   YL YA+S I  RAIPDLRDG KPVHRR++ AM E
Sbjct: 13  ENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHE 72

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR VG+ +GK HPHGD S+YD+LVR+AQ F    PL+ GQGNFG++DG
Sbjct: 73  TGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDG 132

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DS AA RYTE RM + +  +L  +D+D V+F+D Y+ +D EP V P++FPN+L NG  GI
Sbjct: 133 DSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGI 192

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +A LALI++P++  E+LLE + GPDFPTGGII+  R    ++Y
Sbjct: 193 AVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGIIL-GRSGARKAY 251

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VRA+  +EE   G   I++ EIP+QV K+ LIEKIAEL   KRI  +  ++D
Sbjct: 252 LEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQD 311

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R    ++++  +F  + M+T F  NM  L+ G  P+ + L   L  
Sbjct: 312 ESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALN-GGRPEQLTLRDFLTH 370

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------ 417
           +L  R EV+ RR+++ ++    R  +L GL +A  N+DE++A IR+              
Sbjct: 371 FLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMTR 430

Query: 418 -----------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                     ++L+E Q  AIL LRL+ L +L   ++  EL +L
Sbjct: 431 RWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKSL 490

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                +  ++L S ++    I+ E+REVK +F+       RRT   E++        + +
Sbjct: 491 AEAIREFLAILASRERIMGIISDELREVKNLFAVP-----RRT---EITDWAGDLDDEDL 542

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE+E + V I++ G+I+          +     LS +  KE D +     A+T   +L  
Sbjct: 543 IEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELLFF 602

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           +TDG  Y L    L        G+AI  ++ +     I      D+        +++  +
Sbjct: 603 TTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIFST 662

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQ 677
           S+G+      S+     R GK  +K+    ++         D V +     + + F    
Sbjct: 663 SEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQTTD 722

Query: 678 IPE-MSR-GKGVRLQSY-----------------------------------------KD 694
           +     R   GVR                                              D
Sbjct: 723 VRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAEAD 782

Query: 695 GGISDVICFKICE---------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               +V+   I +             +    R   +  +     +  RGG G +      
Sbjct: 783 EDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAMDKAM 842

Query: 746 RSGKFLSS 753
           R G  ++S
Sbjct: 843 RGGPLVAS 850



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 25/132 (18%)

Query: 597 NHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS- 646
           + ++D V                   +L ++++G   I    +     R G+  + +   
Sbjct: 782 DEDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAMDKA 841

Query: 647 --EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703
                +     V   D + +     + +   +D I   SR  G             V  F
Sbjct: 842 MRGGPLVASFPVDRDDQIMLATSTGQSIRVPVDGISFRSRSAG------------GVRVF 889

Query: 704 KICEGLTWIDSA 715
               G   +  A
Sbjct: 890 NTAPGEEVVSVA 901


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/738 (34%), Positives = 386/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 23  QISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYETGNSHDKSYRKSARP 82

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 83  VGDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 142

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +++D VDF+D Y+ +D EP V PS+FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 143 PAAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 202

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALID+P++S E L+EY+ GPDFPTGGI++  R    ++Y  GRG   VRA+  V
Sbjct: 203 VVDATLALIDDPDLSSEDLIEYVPGPDFPTGGIML-GRSGARKAYLEGRGSVIVRAKTRV 261

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 262 EEIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELKR 321

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 322 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGRPEQLTLRRFLTSFVDFREEVVARRTAF 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  NIDEI+A IR+                             
Sbjct: 381 ELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEAREKLMTRRWPAESILEYIELID 440

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +      +L S +
Sbjct: 441 DPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIRDYLEILGSRE 500

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV++ F+       RRT   + S        + +IE+E + V +++ G+
Sbjct: 501 RIMQIIRDELHEVRDQFAVP-----RRTAIVDWSG---DMDDEDLIEREDMVVTVTSGGY 552

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     +  +  KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 553 IKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 612

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     +      D      +  ++   +S G       S+   
Sbjct: 613 QGSRTSKGKAIVNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAGTVRRNALSDFTN 672

Query: 634 NTRKGKTFLKVSSEE---KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRG-KGV 687
               GK  +K   E    K+  V      D V +V  + + + F  + +    SR   GV
Sbjct: 673 VKSNGKIAMKFEGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRANDVRVFNSRASTGV 732

Query: 688 RLQSYKDGGISDVICFKI 705
           R       G   V+   +
Sbjct: 733 RGIKL--NGDDTVVSMSV 748


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 396/794 (49%), Gaps = 62/794 (7%)

Query: 1   MGVDNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M     S ++ L E+N  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI+
Sbjct: 1   MSDIIDSGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM E+GL  G  ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G++D D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL 
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+SGIAVGMAT+IP HN+ E+     ++I+NP I   +L E I GPDFPTGG I+  R+
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQIL-GRD 239

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            I E+++ GRG   +R    +E++          +++TE+P+Q  K+ LIE+IA+L+  +
Sbjct: 240 GIRETFKTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNER 299

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  + DIRDES  D   ++    R   P +++ ++F L+ ++  F  N+  L  G  P 
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PT 358

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK- 412
            + L  +L  +L  R E + RR+ F ++  + R  I+KGLL+A   +DEII +IR+    
Sbjct: 359 TLSLRRMLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDT 418

Query: 413 --PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              +  + +   L+  Q +AIL ++LR L  LE  +IK+E D L  +  +   +LNS ++
Sbjct: 419 ISAREKLQTDHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKINQYQQILNSKER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ ++ E FS             E+           +I  +   V+++  G++
Sbjct: 479 IFEIILEELNKIDERFSSPRK--------TEILDLGGGLDDIDLIANDRSVVLLTEAGYL 530

Query: 531 RSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           + +           S   +    +  D +K+ +  +  D +LL S  G AY LPA  +  
Sbjct: 531 KRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G     L+ +   + I   V    +D+ C LL+++  G       S        
Sbjct: 591 SSRTAKGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKSGFIKRTSLSAFSKIRSN 650

Query: 638 GKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           G   + +   + +  V     GD V +       + F   I+++  + R  +GV+  + K
Sbjct: 651 GLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDINELRPLGRTARGVKSMNLK 710

Query: 694 DGG-------------------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            G                          I + I     +G   + ++     +       
Sbjct: 711 KGDNLVSMDVLTSDLVDKLAKIDDLNKEIEENIEVNSSDGPWVLIASAFGLGKRVPVTQF 770

Query: 729 WLGKRGGVGSLVPK 742
            L KR G+G    K
Sbjct: 771 RLQKRAGMGLRAIK 784



 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 28/160 (17%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIA------------------------LHAHTTD--RI 563
           +R L   +  + +++ K+GD+L                           +  +++D   +
Sbjct: 694 LRPLGRTARGVKSMNLKKGDNLVSMDVLTSDLVDKLAKIDDLNKEIEENIEVNSSDGPWV 753

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L+ S  G    +P       +  G  ++ +     +  +V   V     +LL V+ KG  
Sbjct: 754 LIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIQDDVLVCLKVLGEGEELLFVTEKGVI 813

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
                 +I   +R   G    ++   + +  VV V  + +
Sbjct: 814 VRTNADKISQQSRAATGVKLQRLDEGDHLSEVVLVPREQI 853


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 374/758 (49%), Gaps = 60/758 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRII+AM E G      + K
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVG+V+G+ HPHGD ++YD+LVR+AQPF     L+ GQGNFG++DGD  AA RYTE+
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AE ++  +++  +DF D Y+    EP V PS+ PNLL NG  GIAVGMAT+IP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A LA++D+P +S+E LL  + GPD+PTGG I+  R     +   GRG    R 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEIL-GRSGARLALMTGRGSVVTRG 267

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E + +    IV+TEIPYQV KS +IE IAEL+  KRI  + D+RDES      V+ 
Sbjct: 268 KASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVV 327

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    D+++  ++  + ++T F +NM  L     PQ M L  +L  +L  R +V+ R
Sbjct: 328 ELKRDASGDVILNQLYRFTSLQTSFGVNMLAL-DHGRPQQMGLRRLLDIFLDFREDVVVR 386

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------------ 422
           R  F +     R  +L G+ IA  NIDE+I IIR+   P        +            
Sbjct: 387 RIRFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLI 446

Query: 423 -----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            LT+ Q  AIL L L  L  L   +I  E   L +       +L
Sbjct: 447 DLIADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEIL 506

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    +  E+ EVK  F+       RRT   E   ++     + +I +E + V ++
Sbjct: 507 SSRERIMAIVREELVEVKAQFAVP-----RRTQIAE---SEGDIEDEDLIPREDMVVTVT 558

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+++                 S +  K+ D++     A T   +L  S+ GKA+ L  
Sbjct: 559 HSGYVKRTPLSMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKV 618

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L  G  +  G+A   L+ +    +I                 ++  +  G+    + S
Sbjct: 619 WRLPVGNPQSKGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLS 678

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSR-GKG 686
           + +   R GK  +K+   + +  V   + D  V +     + + F++D++     R   G
Sbjct: 679 DFVNVNRAGKIAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTG 738

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           VR       G   VI   I +    I +   +Y +  +
Sbjct: 739 VRGVRL--LGDDKVISMAILKRSDAIAAERAAYLKRAS 774



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 84/292 (28%), Gaps = 76/292 (26%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
                 G+       +   D  +   A+ E+E        +  +  G IR  K       
Sbjct: 624 GNPQSKGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNV 683

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGR--------- 584
                 A+  +EGD++           +LL ++ G+A  + +    +  GR         
Sbjct: 684 NRAGKIAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVR 743

Query: 585 --GHGEAIQLLIDLNHN------------------------QDIVTAFVYDS-------- 610
             G  + I + I    +                         D   A V D         
Sbjct: 744 LLGDDKVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIA 803

Query: 611 -------------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVV 654
                           +L +S  G        E     R G+  + +       K+    
Sbjct: 804 ELTDERYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKRGGKLAACF 863

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            +   D + +V +  +L+  S+ Q+    R  +GV +  ++  G   V+  +
Sbjct: 864 PIEATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTI--FRTAGGERVVSVE 913


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/794 (32%), Positives = 421/794 (53%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVK 655
           +I+       +D +  L   +  G       SE       G   + +   + +   ++V+
Sbjct: 597 EIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDGLVTAIIVQ 656

Query: 656 VTGDHVAV-----------------------------------VGENRKLLIFSIDQIPE 680
              D + V                                   V +    + F + ++ E
Sbjct: 657 RDEDEIFVSGGEENLENQEIENLDDENLENEESVSTQGKVLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEEIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDGLVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         S    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESVSTQGKVLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827



 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 16/202 (7%)

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           SE  N+ +   +  +L  +       I    R+  EIF    +         E    +  
Sbjct: 628 SEYQNIRSVGVRAINLDENDGLVTAIIVQ--RDEDEIFVSGGEE-NLENQEIENLDDENL 684

Query: 509 TLQQAMIEKEPITVVISNRG--------WIRSLKSHSVDLSALHFKE-GDSLKIALHAHT 559
             ++++  +  +   ++ +G         +R +   S  ++A+ FKE  D L  A+    
Sbjct: 685 ENEESVSTQGKVLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN 744

Query: 560 T-DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               IL +S  G      AG        G+ +  +      +D+++  + D T  L+ ++
Sbjct: 745 DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETMDLMALT 804

Query: 619 SKGNAFIVEESEIIANTRKGKT 640
           S G    V   ++ +  + G+ 
Sbjct: 805 SSGKMIRV---DMQSIRKAGRN 823


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/794 (31%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       I++ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/745 (36%), Positives = 431/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + VE        IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES   
Sbjct: 242 SYRMRSIYSVE-----KNEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHK 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKQTVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLANPESLKNLIITELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 ------GDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +   
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           V D   +LLV SS G  F  + +++  N + GK FL V  + K   ++ +    HVA++ 
Sbjct: 591 VEDDANELLVASSNGYGFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SSGRLLIIDLAELPVLNKGKGNKLIQLDEKEQILSMTTLALDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LGKR   G L+P+G+ ++ + 
Sbjct: 711 LQKYLGKRATKGQLLPRGYQKANRL 735


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 243/798 (30%), Positives = 391/798 (48%), Gaps = 76/798 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L++Y+ GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I++TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 VTMRGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + +++ F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGE-PQLLTLKNFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R   + RR+ ++++  + R  IL+GLLIA  ++D II  IR+       K  +++ + 
Sbjct: 360 DFRIATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITNYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + L  +   +  +L+  ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQDILDRRERVLEIIETEVTQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K  F+        R T    +  D   +   +I  E + ++++ +G+I+ +  ++ +   
Sbjct: 480 KTQFATP------RRTIITHAEGDIDDI--DLIANEKVLILLTKQGYIKRMPVNTFEAQS 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                      K+ D+++  L     D +L  S  G  Y+L    +   S    G  I  
Sbjct: 532 RATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIGSRTSRGTPIVQ 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +   + I +    D       L++++  GN               G   + +   ++
Sbjct: 592 MLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQ 651

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGI---SDVIC 702
           ++ V +    D + +   +   + F    DQ+  + R  +GV+    K G      D++ 
Sbjct: 652 LRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPGDELVGMDILP 711

Query: 703 FKICEGLT--------------------------------------WIDSAGRSYNRSEN 724
             I E L                                        +      Y +   
Sbjct: 712 AAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNSTGPWVLVITMGGYGKRVP 771

Query: 725 DLLGWLGKRGGVGSLVPK 742
                L  R G G    K
Sbjct: 772 VGQFRLQNRAGQGLTATK 789



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 57/268 (21%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + +       E   V+++  G I+     +        L A+  +EGD L+ 
Sbjct: 595 IPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST- 611
              A   D I++ S  G A       + L   G        + L    ++V   +  +  
Sbjct: 655 VRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPGDELVGMDILPAAI 714

Query: 612 -----------------------------------------CKLLVVSSKGNAFIVEESE 630
                                                      +LV++  G    V   +
Sbjct: 715 LETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNSTGPWVLVITMGGYGKRVPVGQ 774

Query: 631 IIANTRKG--KTFLKVSSE---EKMKLVVKVTGDHVAVVGENRK-LLIFSIDQIPEMSR- 683
                R G   T  K  +    +K+  +  V  D   ++  NR  ++  +++ I   SR 
Sbjct: 775 FRLQNRAGQGLTATKFKNRKTKDKLATLRIVNSDEEIMMATNRGIIIRQTVNAISVQSRS 834

Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLT 710
             GVR+Q   +D  I+ V       G T
Sbjct: 835 ATGVRVQRLDEDDAITGVAIVPPDTGDT 862


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 420/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 243/748 (32%), Positives = 390/748 (52%), Gaps = 63/748 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR VG+V+G+
Sbjct: 1   MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L 
Sbjct: 61  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VD++D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI++P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  VEE+ +  
Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRAKTRVEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           W IV+ EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R    +++
Sbjct: 240 WAIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  ++  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ ++    
Sbjct: 300 MNQLYRFTPMQTYFGCNMLALN-GGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARE 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------------- 417
           R  IL GL +A  NIDE++A IR+                                    
Sbjct: 359 RSHILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTAN 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL+ L ++   ++  EL+ L ++ ++   +L S ++    I+
Sbjct: 419 DDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIIS 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+REV+E+F+       RRT   E+         + +I +E + V +++ G+I+     
Sbjct: 479 DELREVRELFAVP-----RRT---EIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLV 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
                +     +S +  KE D +     A+T  ++L  +TDG  Y L    L  G     
Sbjct: 531 DFRAQRRGGKGVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+AI  ++ +     +      D         +++  +S G     + S+       GK 
Sbjct: 591 GKAIVNILPIPTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKI 650

Query: 641 FLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
            +K   E +    +   +    D V +V +  + + F    +    SR   GVR      
Sbjct: 651 AMKFEGEHEGTTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRL-- 708

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRS 722
           G   +++   +            +Y + 
Sbjct: 709 GKGDNLVSMSVIRHFEATSEERVAYLKQ 736


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/745 (36%), Positives = 431/745 (57%), Gaps = 15/745 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + VE        IV+TE+PYQV  S++I +IA+ +IAK++PL+ DIRDES   
Sbjct: 242 SYRMRSIYTVE-----KNEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHK 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKQTVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   + I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLANPESLKSLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 ------GDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +   
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           V D   +LLV SS G  F  + +++  N + GK FL V  + K   ++ +    HVA++ 
Sbjct: 591 VEDDANELLVASSNGYGFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SSGRLLIIDLAELPVLNKGKGNKLIQLDEKEQILSMTTLALDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750
           L  +LGKR   G L+P+G+ ++ + 
Sbjct: 711 LQKYLGKRATKGQLLPRGYQKANRL 735


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 246/772 (31%), Positives = 403/772 (52%), Gaps = 34/772 (4%)

Query: 1   MGVD-NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D   ++ + +    V    +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++
Sbjct: 1   MSSDVPDADPSDVGAAQVTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM E G+   +A +KS+ +VGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG
Sbjct: 61  AMHEAGVTSNSAHRKSSSVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGD  AA RYTEARM+ +AE +L  ++ D VDF   Y++   EP V P+ FPNLL NG
Sbjct: 121 SVDGDPPAAMRYTEARMSPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T+IP HN+ E+ +A +ALI  P+ ++E L+E++ GPDFPTG   +  R ++
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGA-NIVGRNAV 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y+ GRG  RVRA + V+E       IV++E+P+Q  KSRL+E+IAE +    I  + 
Sbjct: 240 HKAYKTGRGRVRVRAEFEVDEE---EGRIVISELPFQQNKSRLVERIAEDVNDGSIEGIR 296

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  D   V+    R    +++   + + S +E  F +    L  G  PQV+ L  
Sbjct: 297 DLRDESDRDGIRVVVELKRDAMAEVVKNQL-LESHLERTFGVINLALVDGS-PQVLDLKQ 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
            L+ ++ HRR+V+ RRS   +   + R  ILKG L A   +D+++  I+N D     K  
Sbjct: 355 TLEYYVEHRRDVVRRRSEHELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAA 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + + +  +E Q + I+ ++L SL  +E  +I+SE +++ A  E+++++L    +    I 
Sbjct: 415 LEADYEFSEAQAEHIVRMQLGSLTSMETQEIESEYEDVTARIERLETILGDPDELDQVII 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+RE+K+ +        RRT+F E          + +I +E   VV+S   +I+     
Sbjct: 475 TELREIKDEYDDE-----RRTSFIEDVG---DVTHEDLIPEEECVVVMSEDDYIKRMSLD 526

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                      +     KEGD +     A++ D +L+ +  G+ Y L    +   S    
Sbjct: 527 TFRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTAR 586

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G++   LIDL+  ++I         D    L +V+  G        +       G   ++
Sbjct: 587 GKSAVNLIDLDDGEEIEAVVNTDDLDDDEFLTMVTRDGYIKRTAVDQFGNIRSTGIRAIR 646

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDV 700
           +   +++  V     G  + +   N   + F+  +   M R  +GV     ++G  ++ V
Sbjct: 647 LEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAMGRTARGVIGIDLREGDAVAGV 706

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                      +      Y +  +     L  R G G +  K   R+G+ ++
Sbjct: 707 AAIDEDRHNWVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRNGEAVA 758



 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 20/218 (9%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLK 552
             +    +       + + E +T +++  G+I+              + A+  ++GD L 
Sbjct: 596 LDDGEEIEAVVNTDDLDDDEFLT-MVTRDGYIKRTAVDQFGNIRSTGIRAIRLEDGDELV 654

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI--DLNHNQDIVTAFVYDS 610
                +    I++ S +G A           R  G   + +I  DL     +      D 
Sbjct: 655 DVEVTNGGTDIVIGSRNGMAIRFAESE---ARAMGRTARGVIGIDLREGDAVAGVAAIDE 711

Query: 611 TCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVV 664
                +L V+  G     +  E    +R GK  + + + ++    V +     GDH+  +
Sbjct: 712 DRHNWVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRNGEAVAIEAVTYGDHLLAM 771

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDV 700
            +N +++   +++I  + R  KGV + +   D  ++ V
Sbjct: 772 SDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASV 809


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/755 (34%), Positives = 408/755 (54%), Gaps = 35/755 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG II+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L  G  P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR      + K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
             G  R T  E S          ++  EP+T+ ++   +I+          +     +S 
Sbjct: 479 --GDERRTQFEKSTEGFDLT--DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHN 599
           +  K+ D +   ++  T +R+L  + +GK Y          S    G A+   I  L  +
Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594

Query: 600 QDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +      D +      LL+++  G        E     + G   L+++  +++  V+ 
Sbjct: 595 ERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIP 654

Query: 656 VTGD-HVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           V GD  V +       + FSI  D+I  + R   GV       G   +V+   I +    
Sbjct: 655 VVGDEDVILGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKLSAG--DEVVGAVIADEKDI 712

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK-GFP 745
              +     +   +    +  R G G    K GF 
Sbjct: 713 FTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFE 747



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           T  +  R  +        E     ++I+  G+++              + AL   EGD L
Sbjct: 590 TLEKDERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
              +     + ++L +  G A      +    R  G     +  I L+   ++V A + D
Sbjct: 650 VKVIPVVGDEDVILGTRKGMAIRFSIAD-DEIRSVGRVAAGVHGIKLSAGDEVVGAVIAD 708

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               +  +S+ GNA   +ES      R GK         E + LV     D +  V E  
Sbjct: 709 E-KDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVAADDNDELVGVSEGG 767

Query: 669 KLLIFSIDQIPEM--SRGKGVRLQSYKDGG 696
             +  S  QI       G+GV LQ  ++G 
Sbjct: 768 ITIKTSASQISSKKAKAGQGVILQRLEEGD 797


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/760 (36%), Positives = 437/760 (57%), Gaps = 25/760 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D  + ++ +  E +   S+    E+ YL YA+  I +RA+P + DG KPV RRII+AMS
Sbjct: 2   SDITTPASVIPNEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMS 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLISGQGN+G   
Sbjct: 62  ELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSPD 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTEA+M+  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT+
Sbjct: 122 DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTT 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L+ NP++S+++L + I  PD PT   I+ S++ +  
Sbjct: 182 GIAVGMATDIPPHNLNEVVRAAIRLLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  GRG +++RA + V++  +    +++  +PYQV  +++ E+IA+L++ K++P + DI
Sbjct: 242 MYETGRGSYKMRAVYHVDQQEKN--LVIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVDI 299

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES  +   RIVL  ++  +D   +M  +F  +D+E+ + +NMN++ +   PQV  L  
Sbjct: 300 HDESDHENACRIVLELRSTRVDVARVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNLKE 359

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L+EWL  RR+V+ RR  FR+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++ 
Sbjct: 360 VLEEWLISRRQVVTRRVQFRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKQELMG 419

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           ++ L++ Q +AIL++RLR L +LEE +++SE D L AE+  +  LL++ +     +  E+
Sbjct: 420 KYDLSDIQANAILDIRLRQLARLEEIELRSEKDALEAERATLQELLDNPESLTQLMIEEL 479

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  +   + G  R +         A  +  ++  EPIT V+S  GWIR+ K H VD
Sbjct: 480 E------ADMKEHGNDRMSSVVEREEATALKESDLVPSEPITAVLSKAGWIRAAKGHDVD 533

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              + ++ GDS +  +H+ + ++I ++ + G++Y++ A  L S RG G+ +  ++     
Sbjct: 534 AKGMSYRSGDSYQAHVHSKSNEKIYIMDSTGRSYSIEAHTLASARGQGDPLTSVLKPPAG 593

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
                        ++++ SS+G  FI     +  N + GK  +   ++ K+  V  +   
Sbjct: 594 ASFEQLLAGADDQRIILASSQGYGFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKT 653

Query: 657 -----------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
                      T + +AVV     LLIF +D++PE  RGKG +L + K G     +    
Sbjct: 654 DSETPDDAQALTQNQIAVVTSAGYLLIFGVDELPEQQRGKGNKLINLKAGEEVLAVIALN 713

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                 I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 714 SHDSLTITAGKRHVTLKPMDLANYTSKRGNRGGQLPRGFQ 753


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 233/783 (29%), Positives = 388/783 (49%), Gaps = 56/783 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G      + K 
Sbjct: 41  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 100

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 101 SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 160

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IP HN
Sbjct: 161 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 220

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+PE S E+LL      I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 221 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 279

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 280 MRAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQ 338

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 339 RLVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 397

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     D+ +  ++    + + Q
Sbjct: 398 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 457

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ +    + +L   ++Q   +  E+ E+ + + 
Sbjct: 458 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 517

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V +++ G+I+                
Sbjct: 518 D-----DRRTRILPFSG---EMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 569

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  + +G+ Y +    +  G     G+ +  L+ L 
Sbjct: 570 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDSKGQHVANLLQLG 629

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------- 646
            ++ I        YD    L++ +  G       +E  +  + G   +++          
Sbjct: 630 PDEKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRTD 689

Query: 647 --------EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK- 693
                    +++         D + VV +    + FS D   +  M R   GV+   ++ 
Sbjct: 690 EEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQAMKFRG 749

Query: 694 DGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             G   ++   +    +    +      + +        L  R G G          G  
Sbjct: 750 QAGEDLLLSMDVVPAESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGSL 809

Query: 751 LSS 753
           + +
Sbjct: 810 VGA 812


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 260/760 (34%), Positives = 395/760 (51%), Gaps = 37/760 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++NISN      E + + S+   ++  Y+ Y++S I  RA+PD RDG KPV RRI++AM 
Sbjct: 1   MENISN------ERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAML 54

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
             GL    AF K A +VGEV+   HPHGD SVYD+LVR+AQ +V RYPLI  QGNFG++D
Sbjct: 55  REGLLHNRAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVD 114

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTEAR+T +AE +L+ +DED VDF   Y E  +EP V P+  PNLL NG++G
Sbjct: 115 GDSPAAYRYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTG 174

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +   A IDNP I+I +L E I GPDFPTGG  +  R+ I E 
Sbjct: 175 IAVGMATNIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGG-RIIGRKGIDEY 233

Query: 243 YRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
              GRG  R+R     E + G     I+++ IPY V ++ L+ KIAEL+  K +  + D+
Sbjct: 234 MNTGRGIVRMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDL 293

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES E+ RIV+  K R   P++++  ++  + +E  F +NM  L     P+ M +  ++
Sbjct: 294 RDESDENTRIVIELK-RGEFPEVIISKLYKKTALEASFGVNMLALDNK-RPKQMNMKEMI 351

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
             ++ HRREV++RR++FR++  + R  IL+G  IA  N+D+ I IIR   N D+ K  + 
Sbjct: 352 NCYIDHRREVIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQ 411

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            ++ L++ QV AIL+LRL  L  +E  +I+ E   LL   E++ S+L +  +  + I  E
Sbjct: 412 EKYPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENEYKLLSIIKEE 471

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + E+KE ++            CE+   +    +  M  KE   + IS++G+I+       
Sbjct: 472 LSELKEKYTSPRK--------CEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDSEF 523

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
              K     +   +  E D ++    A+T D I+    +G+ Y      L  G     G 
Sbjct: 524 RTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSKGR 583

Query: 589 AIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +I  ++ L   + I              L++ +  G       +      + G   + + 
Sbjct: 584 SINNVLQLQKEEQIAAMICVKEITEDFNLVMCTKHGTVKKTNLAAYKNFRKGGIIGINID 643

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICF 703
             + +  V     D  + +V    K + F    + E  R  +GVR     +   +  +  
Sbjct: 644 EGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLREQGRATRGVRGVKLSEKDYAQAMEV 703

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              E    I        +        L KRGG G +  K 
Sbjct: 704 VDNESALLICGI-NGQGKRTTFDEFPLQKRGGSGVIAAKT 742



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 8/202 (3%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                A +    I ++   V+ +  G ++     +        +  ++  EGDSL     
Sbjct: 594 EEQIAAMICVKEITEDFNLVMCTKHGTVKKTNLAAYKNFRKGGIIGINIDEGDSLITVKL 653

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +    +++++  GK+      +L         ++  + L+         V D+   LL+
Sbjct: 654 TNRDSELVIVTHLGKSIRFHESDLREQGRATRGVRG-VKLSEKDYAQAMEVVDNESALLI 712

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
               G        E     R G   +   +      +     D + ++ +N + +  S+ 
Sbjct: 713 CGINGQGKRTTFDEFPLQKRGGSGVIAAKTAGVAGALAVRESDEIMMLTKNGQAVRTSVK 772

Query: 677 QIPEMSR-GKGVRLQSYKDGGI 697
            I  + R  KGVR  +   G +
Sbjct: 773 DINLIGRITKGVRCINLNKGDV 794



 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/185 (8%), Positives = 54/185 (29%), Gaps = 15/185 (8%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
            K   +   +  +       +   D     +       + + +++ G         +R  
Sbjct: 622 KKTNLAAYKNFRKGGIIGINIDEGDSLITVKLTNRDSELVI-VTHLGKSIRFHESDLREQ 680

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
              +  +  +   E D  +          +L+   +G+            +  G  +   
Sbjct: 681 GRATRGVRGVKLSEKDYAQAMEVVDNESALLICGINGQGKRTTFDEFPLQKRGGSGVIA- 739

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMK 651
                   +  A     + ++++++  G A      +  +I    KG   + ++  + + 
Sbjct: 740 ---AKTAGVAGALAVRESDEIMMLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLL 796

Query: 652 LVVKV 656
            + ++
Sbjct: 797 GIARI 801


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 376/765 (49%), Gaps = 60/765 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  +S+   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    ++ K 
Sbjct: 30  DIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 89

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD SVY +LVR+AQPF     LI GQGNFG++DGD  A+ RYTEAR
Sbjct: 90  ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEAR 149

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP HN
Sbjct: 150 MAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 209

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A +AL+D+PE+S + LL+ + GPDFPTGG I+  R +   + R GRG   VR  
Sbjct: 210 LGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEIL-GRTAPRNALRDGRGSVVVRGV 268

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE + +    IVVTE+P+QV K  LIE+IAE++  KR+  + D+RDES      ++  
Sbjct: 269 ASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIE 328

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    D+++  ++  + M++ F +NM  L+    P+ M L  +L+ +L  R EV+ RR
Sbjct: 329 LKRDASGDVILNQLWRYTAMQSSFGVNMLALN-HGRPEQMGLRKLLEVFLDFREEVVVRR 387

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-------------- 421
             F +     R  +L GL +A  NIDE+I IIR+   P                      
Sbjct: 388 VKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALVE 447

Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT+ Q  AIL L L  L  L    I  E   L    +   ++L+
Sbjct: 448 LIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTILS 507

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             K     I  ++ +V+  F+       RRT   E    D     + +I +E + V +++
Sbjct: 508 DRKNILAIIREDLLDVRNQFAVP-----RRTLIGE---GDFELEDEDLIPREDMVVTVTH 559

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++                 S +  K+ D++     A T   +L  +T+GKAY L   
Sbjct: 560 GGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVW 619

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A   L+ +     I+                ++  +  G+    + S+
Sbjct: 620 RLPLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSD 679

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR-GKGV 687
                R GK  +K+   + M  V   T  D V +     + + F  D +     R   GV
Sbjct: 680 FATVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGV 739

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           R    +  G   VI   +   +        +Y +  N +    G+
Sbjct: 740 RGVRLQ--GDDAVISMAVLGRVDATPDERAAYVKHANAMRKATGE 782



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTG-DHVAVV 664
           +   +L V+  G        E     R G+      L   + +++     V   D + +V
Sbjct: 816 AEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGKRLAAAFPVEESDDLLLV 875

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             + +++   + Q+  + R  +GV +    +G
Sbjct: 876 TSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEG 907


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 419/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/707 (35%), Positives = 382/707 (54%), Gaps = 62/707 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 537

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 538 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 597

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 657

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
              +E       GK  +K+   +++  V   +G D V +     K++
Sbjct: 658 TVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599

Query: 671 LIFSIDQIPEMSRG-KG---VRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSE 723
               + Q+PE +RG +G   V L   +       I    +  EG+    +      +  
Sbjct: 600 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 658


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 420/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/836 (31%), Positives = 396/836 (47%), Gaps = 114/836 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VS+   ++  YL YA+S I  RAIPDLRDG KPVHRR++ AM E G      ++KSAR 
Sbjct: 24  QVSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARP 83

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD+LVR+AQPF     L+ GQGNFG++DGD AAA RYTE RM +
Sbjct: 84  VGDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDK 143

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT IP HN+ E
Sbjct: 144 PAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGE 203

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  LALI NP++S E L+E I  PDFPTG  I+  R    ++Y  GRG   VRA+  +
Sbjct: 204 VIDGTLALIANPDLSTEALMEIIPAPDFPTGATIL-GRSGARKAYLEGRGSIIVRAKTRI 262

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + I++ EIPYQV K+R+IE IAE +  K+I  +  ++DES      V+    R
Sbjct: 263 EEIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELKR 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               D+++  ++  + M+  F  NM  L+ G  P+ + L   L  ++  R EV+ RR++F
Sbjct: 323 DATADVVLNQLYRFTPMQISFACNMLALN-GGRPEQLALRDFLTHFITFREEVVARRTAF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            ++    R  IL GL +A  N+DE++A IR+   P                         
Sbjct: 382 ELRKARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLID 441

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L+E Q  AIL+LRL+ L  +   +I  EL +L  +      +L S  
Sbjct: 442 DPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRD 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ E++ +F+       RRT   E+         + +IE+E + V I++ G+
Sbjct: 502 RIMAIISTELAEMRALFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTITSGGY 553

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+                L+++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 554 IKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 613

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
               +  G+AI  ++ +     I      D       + +++  +S G+    + S+   
Sbjct: 614 LAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTN 673

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSRG-KGVRLQ 690
             R GK  +K+     +         D V +V    + + F   +I    SRG  GVR  
Sbjct: 674 VMRNGKIAMKLPEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTEIRVFKSRGSTGVRGI 733

Query: 691 SYKDGGISDVICFKI--------------------------------------------- 705
               G    V+   I                                             
Sbjct: 734 RL--GAEDRVVSMAIIRHFEADPAEREAYLKQRRLMAGAVDDETEADEDEVAVAAGQLST 791

Query: 706 --------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    E L    +   S   + +      G RGG+G     G  R G  ++S
Sbjct: 792 ERYAEMSAAEDLILTITTSGSGKLTSSHDYPVRG-RGGMGVKAMDGAMRGGPLVAS 846



 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS------LKIALHAHTTD 561
              M   E + + I+  G  +   SH         +  K  D       L  +     +D
Sbjct: 794 YAEMSAAEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDGAMRGGPLVASFPVEMSD 853

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +I+L ++ G++  +P   + S R        + +   ++ +V+ 
Sbjct: 854 QIMLATSTGQSIRVPVAQI-SFRSRSAGGVKVFNTGGDEQVVSV 896


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 240/780 (30%), Positives = 392/780 (50%), Gaps = 45/780 (5%)

Query: 6   ISNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++          +K V L+  +E  YL YA+S I  RA+PD+RDG KPVHRR+I+AM + 
Sbjct: 1   MAEEMIQYNHGLIKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDG 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G    ++F KS +IVG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG     
Sbjct: 61  GYRPDSSFSKSVKIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDL 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEARM Q+A  +++ ++E+ VDF   ++    EP V  ++FPNLL NG+ GIA
Sbjct: 121 GAAAPRYTEARMAQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIV 240
           VGMAT IP HN++E+       +DNPE + E+    LLE + GPDFPTG  I+   + I 
Sbjct: 181 VGMATRIPPHNLREVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATIL-GTKGIE 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             YR G G    RA   V+E+  G  C+VVT++P+QV   RL++K+ E I   R+P + D
Sbjct: 240 SMYRTGNGSITQRAIVEVDEI-NGRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIAD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           IRDES+    + ++    +     +++ +++  + M+  FP NM  L  G VP+ + LDG
Sbjct: 299 IRDESSGRAGQRIVIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDG-VPRTLSLDG 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
            ++ W+ H+ EV+ RR+ FR++ +  R+ IL+GL+ A   +DE+IA+IR     D+ +  
Sbjct: 358 FVRHWVNHQIEVIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREG 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++    + E Q D IL ++LR L  LE  +I  E D  LA ++    +L   ++Q   ++
Sbjct: 418 LMKLLDINEIQADHILAMQLRRLAALERQKILDERDEKLALRDDYQDILAKPERQRTIVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ ++   F        RRT        D     + +I ++ + V I+  G+++     
Sbjct: 478 DEVGDIVAKFGD-----DRRTKIL---PFDGEVSDEDLIPEDDVVVTITRSGFVKRTKVS 529

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                      +     ++ D ++      T D  L  +  G+ Y +    L  G     
Sbjct: 530 EYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNMGRVYRIKGYELPEGARDAK 589

Query: 587 GEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ I  L+    ++ I   V+   YD    L++ +  G       ++  +    G   +K
Sbjct: 590 GQHIANLLAFQPDERIASMVSIRSYDQADYLVLATEDGLVKKTRLADYDSARTGGLIAVK 649

Query: 644 VSSE-----EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKD 694
           +        +++     +  G  V +V    + L F+ D   +  M R   GV    ++ 
Sbjct: 650 LREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTADDATLRPMGRATSGVTGMKFR- 708

Query: 695 GGISDVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            G   ++    + EG          Y +  +     +  R G+G  V       G  + +
Sbjct: 709 -GDDRLLAMDVVDEGAEVFVVTEGGYAKRTDIEQYRVQGRAGLGIKVANVVEARGDLVGA 767



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--------KEGDSLK 552
           +      + +     ++    V+ +  G ++  +    D +            +E  ++ 
Sbjct: 600 QPDERIASMVSIRSYDQADYLVLATEDGLVKKTRLADYDSARTGGLIAVKLREREDGTMD 659

Query: 553 IALHAHTTDR---ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
             + A   D    +LL+S  G++    A +  + R  G A   +  +    +  ++   V
Sbjct: 660 RLVSARLLDDGADVLLVSRGGQSLRFTADD-ATLRPMGRATSGVTGMKFRGDDRLLAMDV 718

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT-GDHVAV 663
            D   ++ VV+  G A   +  +     R G   K    V +   +   +    GD V V
Sbjct: 719 VDEGAEVFVVTEGGYAKRTDIEQYRVQGRAGLGIKVANVVEARGDLVGALITHPGDEVMV 778

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           + E+ K++  ++D++    R  +GV+  +   G     I   + 
Sbjct: 779 IMESGKVVRSAVDEVSLTGRNTQGVKFATPDKGDKIISIALNLE 822


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 241/778 (30%), Positives = 384/778 (49%), Gaps = 70/778 (8%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +  + +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ P +L NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV----GRGSWCIV 269
            ++L++YI  PDFPTGG I+  R  I ++Y  GRG   +R    VE +          I+
Sbjct: 181 EKELMQYIPAPDFPTGGQIL-GRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQ  K+ LIEKIAE++  KRI  + DIRDES      V+    R   P +++ ++
Sbjct: 240 VTELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + +++ F  NM  L  G  PQ++ +   L+ +L  R E + RR+ + ++  + R  +
Sbjct: 300 YKQTPLQSNFGANMLALV-GNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  N+D +IA+IR  +     K  ++ +F L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDNLDAVIAVIRAANDTATAKSQLIEQFGLSEPQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E + L      +  +L +  +    I  E  ++K           RRT   EV    
Sbjct: 419 IQAEHEELQVRIADLQDILANRSRILEIIETEALQIKTTHDTP-----RRTAIQEVEG-- 471

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAH 558
                  +I  E   ++++ +G+I+ +  HS           +A   KE D ++  L   
Sbjct: 472 -ELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAAARMKEDDGVEHFLTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
             D +L  S  G  Y+L A  +   S    G  I  ++ + H++ I +      +     
Sbjct: 531 DHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDEKITSVVPVSEFTDDVY 590

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           L++++ KG                G   + +   ++++ V      D + +       + 
Sbjct: 591 LVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVRLCRAEDSIIIGSSQGMAIH 650

Query: 673 FSI--DQIPEMSRG-KGVRLQSYK-------------------------------DGGIS 698
           F    DQ+  + R  +GV+    +                               D    
Sbjct: 651 FKADHDQLRPLGRATRGVKAMKLRSKDELISMDILPAQVVERLIATANSEEVETEDDTSD 710

Query: 699 DVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +V   ++ E    G   +        +        L  R G+G +  K   +  K  +
Sbjct: 711 EVNGEEVHETAGQGPWVLVVTTGGLGKRVPVSQFRLQNRAGMGLVTIKFRHKKDKLAA 768



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 86/257 (33%), Gaps = 48/257 (18%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + +  +    +   V+++ +G+I+     +        L A+   EGD L+ 
Sbjct: 570 IPHDEKITSVVPVSEFTDDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRW 629

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRG---------------------HGEA 589
                  D I++ S+ G A    A +      GR                        + 
Sbjct: 630 VRLCRAEDSIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRSKDELISMDILPAQV 689

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCK-------------LLVVSSKGNAFIVEESEIIANTR 636
           ++ LI   +++++ T                      +LVV++ G    V  S+     R
Sbjct: 690 VERLIATANSEEVETEDDTSDEVNGEEVHETAGQGPWVLVVTTGGLGKRVPVSQFRLQNR 749

Query: 637 KGKTFLKVS---SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            G   + +     ++K+  +  V  GD + +V     ++  ++D I   SR   G+R+Q 
Sbjct: 750 AGMGLVTIKFRHKKDKLAALRVVNEGDELMMVTMRGIIIRQALDAISPQSRMATGIRVQR 809

Query: 692 YKDGGISDVICFKICEG 708
             +      +      G
Sbjct: 810 LDEEDAIAAVALVPLSG 826


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 237/783 (30%), Positives = 380/783 (48%), Gaps = 56/783 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K++ L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 20  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKC 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQP+  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 80  SRVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V PS+FPNLL NG++GIAVGMAT+IPSHN
Sbjct: 140 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHN 199

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++EI E     +++PE S E+LL      I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 200 MREIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+  G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 259 MRAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQ 317

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  + ++  F  NM  L  G VP+ + LD  ++ W+ H+ +
Sbjct: 318 RLVLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWINHQLQ 376

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427
           V+ RR+ +  +  + R  IL+G L A   I+E+IA+IR     +        L    + Q
Sbjct: 377 VVERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLMDLLDVDQIQ 436

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + LL   E  + +L    +Q   +  E+ E+ + + 
Sbjct: 437 ADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDILAKPDRQRKIVGDEMDEIVDKYG 496

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                  RRT     S        + +I +E + V +++ G+I+                
Sbjct: 497 D-----DRRTKILPFSG---EMNVEDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 548

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597
           +     +E D +       T + +L  +  G+ Y +    +  G     G+ +  L+ L 
Sbjct: 549 IKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGSRDSKGQHVANLLQLG 608

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------- 646
            ++ I        Y +   L++ +  G        E  +  + G   +++          
Sbjct: 609 PDEKIQQVLSIKDYQTASYLVLATRSGKIKKTRLDEYDSARQGGLIAVRLREIEGAFRTD 668

Query: 647 --------EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYK- 693
                    +++        D  + VV +    + FS D   +  M R   GV+   ++ 
Sbjct: 669 KEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQTLRPMGRQTAGVQAMKFRG 728

Query: 694 ---DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              D  +  +           +      + +        L  R G G          G  
Sbjct: 729 KPGDDLLLSMDVVPQGTDSDLLVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRGNL 788

Query: 751 LSS 753
           + +
Sbjct: 789 IGA 791


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 231/785 (29%), Positives = 376/785 (47%), Gaps = 57/785 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S         +K V L+  +E+ YL YA+S I  RA+PD+RDG KPVHRR+I+AM + G
Sbjct: 1   MSEDTVYNHGLIKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                +F KSA++VG+V+G  HPHGD ++YD++VRL QP+  RYPL++GQGNFG      
Sbjct: 61  YRPDNSFSKSAKVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM  +A  +++ + E  VDF   Y+    EP V  S+FPNLL NG+ GIAV
Sbjct: 121 AAAPRYTEVRMAPLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241
           GMAT IP HN++E+       ++NP+ + E+LL    + I GPDFPTG +I+ +R  I +
Sbjct: 181 GMATRIPPHNLREVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTR-GIED 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            YR G G    RA   V+E+  G  C+VVT++PYQV   RL++K+ E I   R+P + DI
Sbjct: 240 MYRTGHGSITQRAVVEVDEIH-GRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADI 298

Query: 302 RDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           RDE S    + ++    +     +++ +++  + ++  FP NM  L  G VP+ + LDG 
Sbjct: 299 RDETSGRAGQRIVVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDG-VPRTLSLDGF 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           ++ W+  + EV+ RR+ +R+    +R+ IL G L A   +D +IA+IR+    D  +  +
Sbjct: 358 VRHWVTFQMEVILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGL 417

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +    + E+Q +AIL ++LR L  LE  +I  E +   A       ++   ++Q   I  
Sbjct: 418 MDLLEIDEDQANAILEMQLRRLAALERQKIIDEYEEKAALVADYKDIIAKPERQRAIIGE 477

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+  + + +        RRTT       D     + +I +E + V I+  G+I+      
Sbjct: 478 ELGAIVDKYGD-----DRRTTIL---PFDGEMSVEDLIPEEDVVVTITRGGFIKRTKTSE 529

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
                     +     +  D ++      T +  L  +  G+ Y +    +        G
Sbjct: 530 YRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNLGRVYRIKGYEIPEAGRDAKG 589

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           + I  L+     + I +      YD    L++ ++ G       S+  +    G   +K+
Sbjct: 590 QHIANLLAFQPGETIASTITLKGYDQAQYLVLATADGLVKKTRLSDYDSPRTGGLIAIKL 649

Query: 645 SSEEKMKLVVKVTGDHVAVV------------GENRKLLIFSIDQ--IPEMSR-GKGVRL 689
                         DHV                     L F      +  M R   GV  
Sbjct: 650 RENGN-------GTDHVVAACLVDEDDDLLLVSRKGMSLRFKATDEALRPMGRPSSGVTG 702

Query: 690 QSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +++G    ++  ++  +           + +  +     +  R G+G  V K     G
Sbjct: 703 MKFREG--DSLLTMRVVRDNAEVFVVTEGGFAKRTSVDEYRIQGRAGLGIKVAKLTEERG 760

Query: 749 KFLSS 753
             + +
Sbjct: 761 DLVGA 765



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 19/219 (8%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEG----DSLKIALHAHTTDRILLLSTDGK 571
           V+ +  G ++  +    D      L A+  +E     D +  A      D +LL+S  G 
Sbjct: 620 VLATADGLVKKTRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGM 679

Query: 572 AYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           +    A +  + R  G     +  +       ++T  V     ++ VV+  G A      
Sbjct: 680 SLRFKATD-EALRPMGRPSSGVTGMKFREGDSLLTMRVVRDNAEVFVVTEGGFAKRTSVD 738

Query: 630 EIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
           E     R G   K          +   +   G+ V V+ E+ K++  S  ++ +  R  +
Sbjct: 739 EYRIQGRAGLGIKVAKLTEERGDLVGALITEGEDVMVIMESGKVMRASAAEVSKTGRNTQ 798

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GV   +  DGG   +I        T     G+S    EN
Sbjct: 799 GVTF-ARPDGG-DRIIAIARNIETTIEAEVGQSDGEGEN 835


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 246/761 (32%), Positives = 411/761 (54%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG+I+ S +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  +  
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I + +L HR+E
Sbjct: 301 RLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E Q
Sbjct: 361 VVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ E + 
Sbjct: 421 AQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKHELKQIAEQYG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----KSHSVDLSAL 543
                  RRT        D+         ++P+ V+++ +G+I+ +    +   ++  A 
Sbjct: 481 DE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFIKQIPTPTRRSQINAIAF 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
            FK+GD L   +   + D +   + +GK Y   A  +     +  G A+  L  L   + 
Sbjct: 536 AFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEER 595

Query: 602 IVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           IV              + V+  G        + +         + +  ++++  V    G
Sbjct: 596 IVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAG 653

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLT--WI 712
           +  + +     + + F+  ++  M R  +GV+  +  +G   +  ++     +G T   I
Sbjct: 654 EGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLI 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLS 752
               + Y +  + +      R G G  + K    ++G  +S
Sbjct: 714 TVTEQGYVKRTSLVEYKPQGRAGRGIAIAKIDAEKTGNLVS 754


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/755 (36%), Positives = 447/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEG-----NEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLELLLGSERRLNTLLKKEIKADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD  +L++
Sbjct: 477 YGD-----DRRSPMVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAGSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD+        +  + + L  DG++Y+L + +L S R  GE I   +++    +I   
Sbjct: 531 KSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESHSLPSARSQGEPITGRLNIAAGTNIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + +    ++ L   V     D + 
Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        ++  +S +I     +    + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEFVSHLIALP-QQSSVTLYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPSDLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/750 (36%), Positives = 435/750 (58%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  +++RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKVELMARFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++        R +        K   +  M   EP+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP------RMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GDS        +   +  + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 527 LSYKAGDSYLAHACGKSNQAVAFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 586

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 646

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDS 714
           V  +    ++LIF    +P +S+GKG ++ +      KD          I +  +    S
Sbjct: 647 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITILAANAKDRSELLTKLLLISDQASLEFYS 706

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 707 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 736


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/755 (36%), Positives = 446/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+  AA+ LIDNP+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L +
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + +   +DG++Y+L + +L S R  GE I   +++     I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSAIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662
            + +     LV S  G  F+ + S++++  R GK  + + +  ++   K +  +  D + 
Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIV 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++++GKG ++ +        ++  +S +I     +    + + 
Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEILSHLIAVP-KDATLTLYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKPSDLDNFRGERGRRGGLLPRGLQRVTRI 744


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 408/763 (53%), Gaps = 39/763 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V +   ++  ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL       KS
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGEV+ + HPHGD S+YD++VRL Q +  RY L+  QGNFG++DGD AAA RYTEAR
Sbjct: 63  ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT+VAE IL  ++++ VD +  Y+E  +EP V PS  PNLL NG SGIAVGMAT+IP HN
Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI    LALIDNP I++++++ ++ GPDFPTGG I   +  I E+Y  G  G +VR +
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRIA--KVGIREAYATGHAGLKVRGK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVL 313
             +EE   G   I+++EIPYQ+ K+ L++ I+ +  A +IP +  +RDES     VRIV+
Sbjct: 241 ARIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVI 300

Query: 314 FPKNRSL-DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
             K  +     L++  ++  + +++ + + MN+  +   P+V+PL   ++ +L HRR+V+
Sbjct: 301 ELKRSAAGMGTLVLNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ + ++    R  +L+GLL A  +IDE+I++IR  +   + +  +++RF L+E Q  
Sbjct: 360 TRRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQ 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL+ L  LE  +++ E D L     +++S+L   K  W +I  EIR++++ +  +
Sbjct: 420 AILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDA 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541
                RR+   E+        ++ +I  E + + ++  G+++     +            
Sbjct: 480 -----RRSVITELEE---DINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSS 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNH 598
               +E D+        T D +L  +  G+ +     +L        G  I+ L+  L  
Sbjct: 532 GGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRD 591

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-V 654
           +++I +      +D     +  +  G       ++    T  G   + +   +++  V +
Sbjct: 592 DENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDI 651

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI----CEGL 709
           +  GD V +  +N + + F    + +  R   GV     ++G   +V+   +     E  
Sbjct: 652 QQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREG--DEVVSMALVPGNDEEG 709

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  +     +           RGG+G +      ++GK ++
Sbjct: 710 ELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLVT 752



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 16/203 (7%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +  +  G I+           S  L A++ + GD L         D ++L + +G+A   
Sbjct: 611 IFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRF 670

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEII 632
            A  L+   G      + I L    ++V+  +    D   +LL +S  G     + S+  
Sbjct: 671 EA-TLVRDTGRATQGVIGIRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYP 729

Query: 633 ANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           +  R G   + +   +K    + L      + + V+ E   ++   ++++    R  +GV
Sbjct: 730 SKGRGGLGVITLDVTDKTGKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGV 789

Query: 688 RLQSYKD-GGISDVICFKICEGL 709
           ++ +  D   + D    +  + L
Sbjct: 790 KVINIGDKDRVIDAFPIRKEDEL 812



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 53/172 (30%), Gaps = 13/172 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRG--------WIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +     +   + +     V+ +  G         +R     +  +  +  +EGD +    
Sbjct: 641 QPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDEVVSMA 700

Query: 556 HAHTTDR---ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                D    +L +S  G        +  S    G  +  L   +    +VT        
Sbjct: 701 LVPGNDEEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNE 760

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
           +L+V++ KG        E+    R   G   + +  ++++     +  +   
Sbjct: 761 ELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKEDEL 812


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 420/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+D+ ++S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/837 (29%), Positives = 389/837 (46%), Gaps = 101/837 (12%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETVLADPSDISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAQES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSAR+VGEV+GK HPHGD S+YD+L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +VA  +L  +D+D VDF+  Y+  ++EP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA IDNP IS ++L++ + GPDFPT  +I+  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLIL-GQSGARSAYN 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RAR  VEE       IV+T IPYQV KS L+EKIAE    KR+  + DIRDE
Sbjct: 240 TGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  ++ FP NM  +  G  P+++ L  I++ +
Sbjct: 300 SNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAI-RGGRPEILGLRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           +  R EV+ RR+ + +     R  IL GL++A  N+DE++ IIR    P           
Sbjct: 359 IKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAKE 418

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ QV AIL+LRL  L  L   +I  EL  L  
Sbjct: 419 WPIGEIAPYLRLVEAIENDIDGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAELAE 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E+  ++  F+             E++ A      + +IE
Sbjct: 479 AITEYLAILADRVKLYAVMREELEAIEREFATP--------RLSEITAAADGIEDEDLIE 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D++       T   +L  ST
Sbjct: 531 REDMVVTVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L  G     G  +  L+ L   + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAM 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           G+               GK  +K      ++++  V  +   D V +     K + F  +
Sbjct: 651 GSVRRNSMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAE 710

Query: 677 QIPE-MSR-GKGVRLQSYKDGGISDVICFKI-----CEGLT------------------- 710
            + E  SR   GVR     DG    VI   +      +G                     
Sbjct: 711 DVREFQSRNSTGVRGMKLADG--DAVISLSVLHRSGADGEQREEYLRFAPWKPEKDGEMQ 768

Query: 711 --------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                          +      Y +  +        RGG G        R+G  ++S
Sbjct: 769 DQAMFARMQENEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVAS 825



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 41/242 (16%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW-IRSL--------KSHSVDLSALHFKEGDSL 551
           E    D   +  A++++    ++ + +G  IR            +S  +  +   +GD++
Sbjct: 675 EGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREFQSRNSTGVRGMKLADGDAV 734

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                 H           G         L       E      D       + A + ++ 
Sbjct: 735 ISLSVLH---------RSGADGEQREEYLRFAPWKPEK-----DGEMQDQAMFARMQENE 780

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGEN 667
             +L V + G   +    E     R G+    + +       +        D + +V + 
Sbjct: 781 QFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVASFPATRADQLMLVTDQ 840

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            KL+   +D +  + R   GVRL             F + +    + +A    + +E DL
Sbjct: 841 AKLIRMGLDSLRVIGRNSAGVRL-------------FNVADNEHVVSAAKIEESEAEADL 887

Query: 727 LG 728
            G
Sbjct: 888 DG 889


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 239/773 (30%), Positives = 394/773 (50%), Gaps = 53/773 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   
Sbjct: 195 PPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F   M  L  G    ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPI-LLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR T  E+           +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RY------PTRRRT--EILDLGGGLSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          D++K+ +  +  D ++L S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I T      +     L++++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704
            V   V GD V +  +    + F +   ++  + R  +GVR  + +DG      DV+  +
Sbjct: 665 WVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVE 724

Query: 705 IC---------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +                EG   + ++     +        L KR G+G    K
Sbjct: 725 LADQVAASAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 777



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 85/239 (35%), Gaps = 31/239 (12%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                A    +  +    +   V+++  G+I+  +  +        L A++ +EGD+L  
Sbjct: 606 IPREEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLL-----------IDLNH 598
              A   D +L+ S  G    + L    L  L     G     L           + +  
Sbjct: 666 VRLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVEL 725

Query: 599 NQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKM 650
              +  +   +         +LV S+ G    V  ++     R G     +K  ++ +++
Sbjct: 726 ADQVAASAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDEL 785

Query: 651 K-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             L V   G+ + +V E   ++  S D IP+ SR   GVRLQ    G     +     E
Sbjct: 786 VGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPE 844


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/802 (31%), Positives = 396/802 (49%), Gaps = 80/802 (9%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +  + LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +L  ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +A +A+I NPEI+  +L++Y+ GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQIL-GTSAIREAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E V +        I++TE+PYQ  K+ LIEKIAE++  KR+  + DIRDES
Sbjct: 241 ITMRGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R   P +++ +++  + ++  F  NM  L     PQV+ L   L  +L
Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSE-PQVLTLKQFLSVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA   +D II +IR+       K  +++ + 
Sbjct: 360 DFRIESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELITTYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E D L A+   +  +L   ++    I  E+ ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDILARRERVLEIIETEVAQL 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K  F+       RRT        +     + +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTNFATP-----RRTVIL---PGEGELDDRDLIANEKAIILVTEQGYIKRMPVNTFEAQS 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D+++  L     D IL  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASSRTSRGTPIVQ 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +   + I +    D       L++++  GN    E +        G   + +   ++
Sbjct: 592 MLPIPKEEKITSIVPVDEFSSEEYLVMLTKGGNIKKTELAAFSHIRANGLIAISLEEGDQ 651

Query: 650 MKLVVKVT-GDHVAVVGENRKLL--IFSIDQIPEMSRG-KGVRLQSYKDGGI---SDVIC 702
           ++ V +    D V +   N   +    + +Q+  +SR  +GV+    K+       D++ 
Sbjct: 652 LRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKLKNKDELVGMDILP 711

Query: 703 FKICEGLTWIDSAG------------------------------------------RSYN 720
             I E L  +  A                                             Y 
Sbjct: 712 AAILETLDIVTEAETEDIEAIETIETEDIEITETTEESAEVPSTGIVGPWVLVITMGGYG 771

Query: 721 RSENDLLGWLGKRGGVGSLVPK 742
           +        L  R G G +  K
Sbjct: 772 KRVPVAQFRLQNRAGQGLMATK 793



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGDH--VAVVGE 666
           +LV++  G    V  ++     R G+  +        +++K+  +  V  D   + +V  
Sbjct: 762 VLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATLRIVNNDDDEIMMVTN 821

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              ++  +++ I   SR   GVR+Q   +      +     +  
Sbjct: 822 RGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDAA 865


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/833 (30%), Positives = 401/833 (48%), Gaps = 108/833 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +V+  +++ +D++ V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R R
Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTSFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR------------ 420
           + + +     +  IL GL IA  NIDEII II+  +     K  +++R            
Sbjct: 366 TIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLVK 425

Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                         S TE Q  AIL +RL+ L  +E+ +++ EL NL  E  +  ++L S
Sbjct: 426 LVDDKAMLNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILGS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  G+ Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +    SR   GVR
Sbjct: 658 KKIQSSGKIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVR 717

Query: 689 LQSYKDGGISDVICFKICEGLT-------------------------------------- 710
                      VI   + +G+                                       
Sbjct: 718 GMKL--AKEDSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEEFNLEELGVTLTAD 775

Query: 711 -----------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                       +      + +  +     +  RGG G +      ++G  + 
Sbjct: 776 SILKMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 80/289 (27%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
                 K  S    A+   + D L         + ILL +  GKA   P  +L    S  
Sbjct: 653 DLLDFKKIQSSGKIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 585 GHGEAIQLL---------------------------------IDLNHNQDI--------- 602
             G     L                                 +++   ++          
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEEFNLEELGVTL 772

Query: 603 ---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
                  + +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 TADSILKMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    DG     +  
Sbjct: 833 KIDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSL 881



 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKIDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +++ G     +     I      G    K+   EK+  V  +  
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 430/754 (57%), Gaps = 27/754 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  + V++ +L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A 
Sbjct: 4   LTHDVVESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           FKKSAR VG+V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G   D  S AA R
Sbjct: 64  FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPDDPKSFAAMR 123

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++ A+++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT 
Sbjct: 124 YTESRLSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HNVQEI +A + LID P  S+++LLEY+ GPDFPT   I+  R  I + Y+ GRG  
Sbjct: 184 IPPHNVQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRGSI 243

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           R+RA W  EE       +V+T +P+QV  ++++E+IA  + +K++P++ED+RDES  +  
Sbjct: 244 RMRAIWNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHENP 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+ P++  +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL +R
Sbjct: 299 TRLVIIPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLVYR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            + + RR ++R+  + RR+ IL+GLL A+LNID++I IIR ED  K V+++ FSL+E+Q 
Sbjct: 359 CDTVRRRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKSVLITCFSLSESQT 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL L+LR L KLEE +++SE      E  ++  LL S       +  EI+    +   
Sbjct: 419 EAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQMLLESKAAFNQLLKKEIQADTAV--C 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R +        KA  +  +   EP+TVV+S  GW+RS K H VD S  ++K G
Sbjct: 477 HHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTVVLSKMGWVRSAKGHDVDPSGFNYKAG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D  + A    +    + + + G++Y+L    L S RG GE +      +    I    + 
Sbjct: 537 DCFRTAAQGKSNQPAVFIDSTGRSYSLDPLTLPSARGQGEPLTGRFISSTEAVIEYVLMA 596

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-EN 667
           D+  +LL+ S  G  FI   S++I   R GK  + + S  K+   +K+ G    ++    
Sbjct: 597 DNDQQLLLSSDAGYGFICHFSDLITKNRAGKALMALPSNAKILPPLKLHGADDMLLSITA 656

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI-----------DSAG 716
            ++L+F    +P +++GKG ++ S               + L W+            S  
Sbjct: 657 GRILMFPAADLPRLTKGKGNKIISISKQER-----MAGSDNLRWLLRLSVQASVTFYSGK 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       +L  +  KRG  GSL+P+G  R  + 
Sbjct: 712 RKLTLKPEELKKFSAKRGSKGSLLPRGLTRIDRI 745


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/793 (32%), Positives = 402/793 (50%), Gaps = 66/793 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V +   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM  +G  +   +KK
Sbjct: 6   KEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VYD++VR+AQPF+ RY LI GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM++++  +L  ++++ VD+   Y+  +  P V P++ PN+L NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN  I+I++L+++I GPDFP+  +I +  E + ++Y  G+G   +RA
Sbjct: 186 NLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSE-LKKAYETGKGKIYIRA 244

Query: 255 RWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +  +V  G   I+V EIPYQV KS+L+EKIAEL+  KRI  +  +RDES +D   V+
Sbjct: 245 RAEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                    ++++ +++ L+ ++  F +NM  L     P+VM L  IL  ++ HRR V+ 
Sbjct: 305 IDIKHDAISEIVLNNLYSLTQLQVSFGINMVAL-HHGQPKVMSLKDILSAFICHRRSVIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------- 418
           RR  F ++    R+ +L+GL+IA  NID +I +IR  +                      
Sbjct: 364 RRILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNM 423

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                 +    T+NQ  AIL+LRL  L  LE  ++  E D+LL 
Sbjct: 424 RKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + EK+   L +     + I  E+  +KE +S       RRT   E++    +   + +I 
Sbjct: 484 KMEKLIFTLKNKSSLMDVIRQELVSIKEEYSD-----IRRT---EINNTIPSIDVENLIN 535

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +S +G+++          K           KE D +   L A+T D +LL S 
Sbjct: 536 QRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSN 595

Query: 569 DGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +    L        G  I  L+ L+ N+ I T      Y    ++ + +S G  
Sbjct: 596 YGRIYWMKVYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYTKGHQVFMATSSGFV 655

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                 E       G   L ++  +++       G + V +     K++ F   Q+  M 
Sbjct: 656 KKTALMEFSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSMG 715

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           R   GV+      G    V+   I +   + +      + +  +     L  R   G + 
Sbjct: 716 RSAVGVKGIHLLQG--DRVVSLIIPKNKSSILTITKNGFGKRTDQSEYPLKSRSTKGVIS 773

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 774 IKVTERNGNVVGA 786



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 75/202 (37%), Gaps = 12/202 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           +V+      L      K     + ++ G+++        +  +V + AL+   GD L  A
Sbjct: 626 DVNERITTILPIQKYTKGHQVFMATSSGFVKKTALMEFSRPRNVGIIALNLNVGDELIGA 685

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                 + ++L +  GK        + S       ++  I L     +V+  +  +   +
Sbjct: 686 DVTDGNNEVMLFTAYGKVVRFKETQVRSMGRSAVGVKG-IHLLQGDRVVSLIIPKNKSSI 744

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G     ++SE    +R  K  + +     +   +  V     D + ++ +  +L
Sbjct: 745 LTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERNGNVVGAVQVSHDDQIMIITDAGRL 804

Query: 671 LIFSIDQIPEMSR-GKGVRLQS 691
           +   + ++  + R  KGV L  
Sbjct: 805 VRIRVSEVNIIKRNTKGVMLIR 826


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 231/762 (30%), Positives = 399/762 (52%), Gaps = 37/762 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++++  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y +LV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G+++D VDF   ++ E  EP V P++FPNLL NG +GIAVGMAT+IP H
Sbjct: 127 KMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPH 186

Query: 195 NVQEICEA----ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +A        I+  E  ++++++ I GPDFPTG +I+  R  I E+YR GRG  
Sbjct: 187 NLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALIL-GRRGIEEAYRSGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+V E+PY V +SR+IEK+AEL+  K+I  +  I D + +   
Sbjct: 246 KMRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSS 305

Query: 311 IVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +  +P++++  ++  + ++  F + M  +  G  P+++ L  +L E+L H+ 
Sbjct: 306 AKINIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGE-PRILNLQEMLNEFLKHQI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
            V+ RR+ + +   + R  IL+GLL A  +IDEI+ IIR  D   K K  +++RF+ ++ 
Sbjct: 365 NVVTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIARFAFSDA 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  +++SE + LL    +   +L+  ++  + I  E+ ++KE F
Sbjct: 425 QAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYREILSDQRELLSVIREELTQLKEKF 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSV 538
            +      RRT F      D A   + +I  + I +  +  G+I+               
Sbjct: 485 GEK-----RRTQFA----FDDALDDEDLIPDDDIVISSTRLGYIKRMSPENFRQQNRGGK 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +   + D+++    +     I+L +  G+ + +    +   S    G A+  L+ L
Sbjct: 536 GIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPEASRTSRGTALVNLLKL 595

Query: 597 NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + +   F          L++ +  G       S+     + G   + +  ++++   
Sbjct: 596 QPEERVNACFSLRDLSSEQYLVLATKSGLVKKTPLSQYANVRKNGLIAMNIREDDQLIEA 655

Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-KICEGLT 710
             V  G+ + +V +    + F  + I    R   GVR      G   ++I   K+ +G  
Sbjct: 656 KLVDPGEEIMLVTKKGMAIRFREEDIRSTGRSAMGVRGIRLDSG--DELIGMQKLSQGGY 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  + + Y +           RGG G    +   ++G  + 
Sbjct: 714 LLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITEKTGDLVG 755



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 70/199 (35%), Gaps = 12/199 (6%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E   V+ +  G ++              L A++ +E D L  A      + I+L++  G
Sbjct: 612 SEQYLVLATKSGLVKKTPLSQYANVRKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKG 671

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            A      ++ S       ++  I L+   +++          LL+VS KG   +    E
Sbjct: 672 MAIRFREEDIRSTGRSAMGVRG-IRLDSGDELIGMQKLSQGGYLLLVSEKGYGKLTATEE 730

Query: 631 IIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
                R GK      +   + + +   +      + ++     L+  S++++  + R   
Sbjct: 731 FKPQNRGGKGLHCYRITEKTGDLVGFKLCDQDREIMLITSEGILIRMSLEKVSVIGRNTS 790

Query: 686 GVRLQSYKDGGISDVICFK 704
           GV+       G + +    
Sbjct: 791 GVKFMDLPKNGDTVIASIA 809


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 242/790 (30%), Positives = 400/790 (50%), Gaps = 61/790 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VD+ D ++    EP+V P++ P LL NG+SGIAVGMAT+I
Sbjct: 135 ESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   ALI NPE+S  +L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G  P ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGE-PVLLTLRKMLQVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R + + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +     LT
Sbjct: 373 RVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                     RRT   ++    +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 KHCLP-----RRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I    +   +D    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLSVISFDDDTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG---ISDVICFK 704
            V   V GD V +       + F +  +++  + R  +GVR  + + G      DV+  +
Sbjct: 665 WVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVE 724

Query: 705 ICE-------------GLTWIDSAG--------RSYNRSENDLLGWLGKRGGVGSLVPKG 743
           + +             G T + S G            +        L KR G+G    K 
Sbjct: 725 LADQVAKSLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIK- 783

Query: 744 FPRSGK-FLS 752
           F R G   + 
Sbjct: 784 FRREGDELVG 793



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKM 650
           ++ + ++   T  V D    +LV S+ G    V  ++     R G     +      +++
Sbjct: 733 LEDDQDESGETVVVSD-GPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDEL 791

Query: 651 KLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKIC 706
             +  +  G+ + +V E   ++  S D+IP+ SR   GVRLQ    G  +S+V+     
Sbjct: 792 VGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPD 850



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 2/115 (1%)

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D     +       +L+ S  G    +P       +  G  ++ +       ++V   
Sbjct: 736 DQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRREGDELVGLR 795

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           V     +LL+VS +G        +I   +R   G    ++ + +++  VV V  D
Sbjct: 796 VLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRLSEVVLVPPD 850


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/800 (31%), Positives = 418/800 (52%), Gaps = 65/800 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENIFSSNQDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DGD 
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGGII   ++ I+E+Y+ 
Sbjct: 181 GMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIF-GKKGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E+       IVV E+PYQV K++L   IA+L+  K I  + ++RDES
Sbjct: 240 GRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R    ++++ ++F  + ME  F + M  ++    P+V  L  +LK +L
Sbjct: 299 DRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKE-PKVFSLLELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+        +  ++++F 
Sbjct: 358 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+
Sbjct: 418 LSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F              ++         + +I  E + V I++RG+I+          K
Sbjct: 478 KSKFKCP--------RITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A+   + D ++      + D ++ ++  G+ Y L    +   S    G+A+  
Sbjct: 530 RGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           LI L  ++ I        +D +  L   +  G       SE       G   + +   ++
Sbjct: 590 LISLQADEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDE 649

Query: 650 MKLVVKVT----------------------------------GDHVAVVGENRKLLIFSI 675
           +  VV                                     G  +  V +    + F++
Sbjct: 650 LVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFAL 709

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGRSYNRSENDLLGWLGK 732
           +++ ++ R  +GV    +K+  + +V+   + E  +   +  + +   +        L  
Sbjct: 710 NKVRQIGRVSRGVTAIRFKE-NLDEVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQS 768

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG G +  K  P++   + 
Sbjct: 769 RGGKGVICMKLTPKTKDLVG 788



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 10/172 (5%)

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPAGNLLSGRGHGEAIQLL- 593
               +S L     D+ + +L +    ++L  ++  G         +         +  + 
Sbjct: 670 DGEGVSNLQTISEDNSENSLES---GKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIR 726

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KM 650
              N ++ +    + + + ++L VS KG        E    +R GK  + +        +
Sbjct: 727 FKENLDEVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPKTKDL 786

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             VV V  +  +  +  + K++   +  I +  R   GV + +     +  +
Sbjct: 787 VGVVMVDEEMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDEVVSI 838


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 389/775 (50%), Gaps = 60/775 (7%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K AR+VGEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE+R+  +    +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ +  L
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI NPE++  +L  Y+ GPDFPTGG I+  R  I E Y  GRG   +R    +E V   
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQIL-GRRGIREMYETGRGSVTMRGVAAIETVEAK 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D   ++    R  
Sbjct: 240 GRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDA 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ ++F L+ +++ F   M  L  G  P ++ L  +L+ +L  R E + RR+ + +
Sbjct: 300 YPQVVLNNLFKLTPLQSNFSAYMLALVNGE-PVLLTLRKMLQVFLDFRVETIERRTRYLL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R  IL GLLIA  N+D IIA+IR        +  +V +F L+E Q DAIL ++LR
Sbjct: 359 RKAEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQFGLSEVQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++LLA+      +L   ++ +  I  E+  ++  +        RRT
Sbjct: 419 RLTALEADKIRLEHEDLLAKITDYKDILARKERVYGLITDELGVIRSRYDSP-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGD 549
              +V    +      +I  E   V+++  G+++ +           +   +    +  +
Sbjct: 474 EILDVEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTKTQGEE 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
           ++++ +  +  D +LL S  G  YT+PA  +   S    G  I  L+ +   + I +   
Sbjct: 531 AVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIVQLLPIPREEQITSLLA 590

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
              +     L++++S G       S        G   + +   + +  V     GD V +
Sbjct: 591 VSEFTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLEEGDALTWVRLAQPGDSVLI 650

Query: 664 VGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDG------------------------G 696
              N   + F +   ++  + R  +GVR  + + G                         
Sbjct: 651 GSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVELADRVEGSSAASD 710

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             D       EG   + ++     +        + KR G+G    K F R G  L
Sbjct: 711 EDDTEEVAPSEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMK-FRRDGDVL 764



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 38/245 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +   ++ + V++++ G+++  +  +        L A+  +EGD+L  
Sbjct: 579 IPREEQITSLLAVSEFTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLEEGDALTW 638

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLLIDLNH----------- 598
              A   D +L+ S +G    + L    L  L     G     L   +            
Sbjct: 639 VRLAQPGDSVLIGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSMDVLPVEL 698

Query: 599 -----------NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS 645
                      ++D            +LV S+ G    V   +     R G     +K  
Sbjct: 699 ADRVEGSSAASDEDDTEEVAPSEGPWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFR 758

Query: 646 SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVI 701
            +  + + ++V   G+ + +V E   ++    D +P+ SR   GV+LQ    G  +S+V+
Sbjct: 759 RDGDVLVGLRVLGAGEELLLVSERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVV 818

Query: 702 CFKIC 706
                
Sbjct: 819 LVPPA 823


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/755 (34%), Positives = 408/755 (54%), Gaps = 35/755 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  + +  L   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     F+
Sbjct: 5   EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTE
Sbjct: 65  KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM +++  +L+ +D+D VDF   Y+    EPVV PS+ PNLL NG+ GIAVGMAT+IPS
Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +   A+IDNPEI++++L+ Y+ GPDFPTG II+  ++ I ++YR GRG  +VR
Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +EE+  G   IVVTEIPYQV K+RL+E IAEL   K I  +  +RDES  +   ++
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 ++P +++ ++F  + +E  F   M  L  G  P+V+ L  ++  +L H+ EV+ 
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS + +     +  IL+GLLIA  +IDE+I  IR      + K  ++S+F L+E Q  A
Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I+S+  +++     ++ LL+   +    +  E+ E+KE F    
Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
             G  R T  E S          ++  EP+T+ ++   +I+          +     +S 
Sbjct: 479 --GDERRTQFEKSTEGFDLT--DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHN 599
           +  K+ D +   ++  T +R+L  + +GK Y          S    G A+   I  L  +
Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594

Query: 600 QDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +      D +      LL+++  G        E     + G   L+++  +++  V+ 
Sbjct: 595 ERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRLVKVIP 654

Query: 656 VTGD-HVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
           V GD  V +       + FSI  D+I  + R   GV       G   +V+   I +    
Sbjct: 655 VVGDEDVILGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKLSTG--DEVVGAVIADEKDI 712

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK-GFP 745
              +     +   +    +  R G G    K GF 
Sbjct: 713 FTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFE 747



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 77/222 (34%), Gaps = 13/222 (5%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           T  +  R  +        E     ++I+  G+++              + AL   EGD L
Sbjct: 590 TLEKDERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKNGIIALRLNEGDRL 649

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
              +     + ++L +  G A      +    R  G     +  I L+   ++V A + D
Sbjct: 650 VKVIPVVGDEDVILGTRKGMAIRFSIAD-DEIRAVGRVAAGVHGIKLSTGDEVVGAVIAD 708

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENR 668
               +  +S+ GNA   +ES      R GK         E + LV     D +  V E  
Sbjct: 709 E-KDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVAADDNDELVGVSEGG 767

Query: 669 KLLIFSIDQIPEM--SRGKGVRLQSYKDGGISDVICFKICEG 708
             +  S  QI       G+GV LQ  ++G     I     E 
Sbjct: 768 ITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVVPEEN 809


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 269/746 (36%), Positives = 432/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +         IV+TE+PYQV  S++I +IA+ +IAK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYTI-----DKNEIVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQ 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + + 
Sbjct: 357 IRKQTVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEAKAAIIREQLANPESLKNLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD + L+++
Sbjct: 477 ------GDDRRSPIVTRADAVQIKEQDLMPAETVTVVLSEAGWVRAAKGGDVDAANLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  +L S RG GE +   +        +  F
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVF 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           + D   +LL VSS G  F  + +++  N + GK+FL V+ +     ++ +    HVA++ 
Sbjct: 591 IEDDASELLAVSSNGYGFKTQAAQLDTNAKAGKSFLTVADKATALPLLPIQQATHVAILS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L    +      +     + +  + +  +      +D
Sbjct: 651 SAGRLLIVDLTELPVLNKGKGNKLIQLDEKEQILSMTTLNLDEIIQVAAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ + L
Sbjct: 711 LQKYIGKRATKGQLLPRGYQKANRLL 736


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 390/767 (50%), Gaps = 36/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 51  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 110

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 111 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 170

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 171 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 230

Query: 192 PSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +     E LLE I GPDFPTG  ++   + I+E+YR GR
Sbjct: 231 PPHNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVL-GTKGILEAYRTGR 289

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE S 
Sbjct: 290 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSG 348

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ +++  + ++  F  NM  +  G +P+ + LDG +  W+ 
Sbjct: 349 RTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLALDGFISAWVD 407

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR  +     +  ++    +
Sbjct: 408 HQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMKLLDI 467

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I+ +   L     +   +L +   Q   I+ E++E+ 
Sbjct: 468 DELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYKHILATPTVQREIISTELQEIT 527

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT    +   D     + +I +E + V ++  G+I+            
Sbjct: 528 DKYGD-----DRRTEI--MLGFDGDMSMEDLIPEEEMVVTVTRGGYIKRTRIDNYRSQHR 580

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
               +     +  D ++      T   +L L+  G+ Y   A  L        G+ +  L
Sbjct: 581 GGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAKGQHVANL 640

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  +++I        Y     L++ +  G       +E   N   G   + +   + +
Sbjct: 641 LAMQPDEEIQQVLDIRDYQVAQYLVLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDAL 700

Query: 651 KLV-VKVTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               +    D + +V      L FS D   +  M R   GV+  +++             
Sbjct: 701 VSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVKGMTFRGDDTLLSASVVGE 760

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G  ++ + G  + +        +  RGG+G  V K     G    +
Sbjct: 761 QGYVFVVTEG-GFAKRTAADQYRVQNRGGMGIKVAKLQDARGDLAGA 806



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 23/219 (10%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ +  G ++       D +      A++ ++GD+L  AL     D +LL+S  G +   
Sbjct: 665 VLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRF 724

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            A N  + R  G +   +  +    +  +++A V      + VV+  G A      +   
Sbjct: 725 SADN-QALRPMGRSTSGVKGMTFRGDDTLLSASVVGEQGYVFVVTEGGFAKRTAADQYRV 783

Query: 634 NTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV- 687
             R G      K+     +    ++    D + VV  + K++   + ++P   R   GV 
Sbjct: 784 QNRGGMGIKVAKLQDARGDLAGALIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVV 843

Query: 688 --------RLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                   R+ S       +++  +     +   +AG+ 
Sbjct: 844 FARFADDDRIISLAKNSERNLVVPEAAPDASDGTAAGKG 882


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 245/773 (31%), Positives = 388/773 (50%), Gaps = 55/773 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE SIE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGN-HSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 417 -----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +      G  R T  E    +     + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKY------GDERRTAIEPVSGEVDI--EDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +  G  +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + V       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             ++            + +  +    + Y R        +  RGG G    K 
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  R           E +   + ++  G I+    +         L A+   EGD +
Sbjct: 621 QLDEGERIAAMMKTSDFAENKYF-ICVTKYGKIKRTPLYDFRNVRKNGLRAITLAEGDEI 679

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDS 610
             A        I++ +  G A       + S       ++  I L  +  IV  A VY  
Sbjct: 680 AAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRA-IKLREDDYIVGAAKVYSD 738

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
             ++L V+ KG   +   S+     R G         +    V  +      D V ++  
Sbjct: 739 DMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYVCGIRSIQADDDVILIST 798

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  ++    + +  M R G GVR+    D     V+ F   E     D   
Sbjct: 799 DGVIIRIRANDLRVMRRTGLGVRVMKLSDE--DRVVTFTRTEHDETADIEE 847


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 234/730 (32%), Positives = 377/730 (51%), Gaps = 61/730 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHG+ ++YD+L R+AQ +  R PLI GQGNFG+IDGD  AA RYTE R+ + A  +L 
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDFRD Y+    EPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +A
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP I + ++++ I GPDFPTG +I+  R  I  +Y  GRG   +R    +E +    
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGVATIEPMRGDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TE+PYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + +++
Sbjct: 240 EQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ M L  +L+ +++ R +V+ RR+ + ++    
Sbjct: 300 LNQLYRYTPLQTSFGCNMVALN-GGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------------------KPV 416
           R  +L GL I+  NIDE+I +IR+   P                             +  
Sbjct: 359 RAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRIN 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  +   +L+S  +    + 
Sbjct: 419 EDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RR+   E          + +I +E + V +S+ G+I+     
Sbjct: 479 DELVSIRDEFGTP-----RRSQIVE---GGPDMDDEDLIAREDMVVTVSHLGYIKRVPLT 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
                +      S +  ++ D +     A+T   +L  S+ G  Y      L  G     
Sbjct: 531 TYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+A+  ++ L   + I T               ++  +++G     +  + +   R GK 
Sbjct: 591 GKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKI 650

Query: 641 FLKVS-SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGG 696
            +K+    +++  V   T  D V +     + + F +D +     R   GVR  +  +G 
Sbjct: 651 AMKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEG- 709

Query: 697 ISDVICFKIC 706
              +I   I 
Sbjct: 710 -DRIISMTIV 718



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 75/288 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + A             +  + RG +R  K             A
Sbjct: 599 PLEPGERITTIMPLPEDETAWETLD-------VMFSTTRGTVRRNKLGDFVQVNRNGKIA 651

Query: 543 LHF-KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +   +EGD +         D +LL +  G+    P  ++    G        I++     
Sbjct: 652 MKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDR 711

Query: 602 -----IVTAFVYDS---------------------------------------------- 610
                IV     +                                               
Sbjct: 712 IISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELK 771

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKVT-GDHVA 662
                +L VS KG        +   + R GK        K +   ++     V  GD + 
Sbjct: 772 AREEFVLTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIM 831

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEG 708
           +V +  +L+   ++ I   SR  KGV +  + KD  +  V      EG
Sbjct: 832 LVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEG 879


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 276/754 (36%), Positives = 445/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SNEITFDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LID+P+  + +++E + GPD+PT   I+  +  I + Y+ GR
Sbjct: 182 ATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  ILKEW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +TE
Sbjct: 357 EFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    I  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLIKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKAMTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +  + + L +DG++Y+L + +L S R  GE I   ++++    I   
Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNISAGTSIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     LV S  G  F+ + S++++  + GK  + +    ++     +     + + 
Sbjct: 591 VMGEDEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAG 716
            +    ++L+F I  +P++S+GKG ++ +       +          I E  T  I +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKEREEFVSHLMAIPENATLTIYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/792 (32%), Positives = 400/792 (50%), Gaps = 63/792 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +G  +  ++KK
Sbjct: 6   KEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRSYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+VIGK HPHGD +VY+++VR+AQPF+ RY LI GQGNFG++DGD AAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  ++++ VD+   Y+  +  P + P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LA IDN +I+I+ L++YI GPDFP+  II + R  + E+Y  GRG   +RA
Sbjct: 186 NLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYR-GLKEAYETGRGKIYIRA 244

Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E ++  G   IV+ EIPYQ+ KSRL+EKIAEL+  KRI  + ++RDES +D   ++
Sbjct: 245 RSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                    ++++ +++ L+ ++  F +NM  L  G+ P+ M L  IL  ++ HRR ++ 
Sbjct: 305 IDIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQ-PKTMSLKDILSAFVCHRRSIIT 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420
           RR  F ++    RV +L+GL++A  NID +IA+I+  +                      
Sbjct: 364 RRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNIINM 423

Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   +  T+NQ  AIL LRL  L  LE  ++  E +N+L 
Sbjct: 424 RKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENVLK 483

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + E +  +L +       I  E+  +KE ++       RRT   E          + +I 
Sbjct: 484 KMENLICVLQNPSSLMGLIRQELVSIKEEYNDP-----RRTEISENIV--SNIDLENLIN 536

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +  + V +S +G+++          K           KE D +   L A+T D +LL S 
Sbjct: 537 QRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSN 596

Query: 569 DGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +    L        G  I  L+ L+ N+ I        Y +  ++ + +S G  
Sbjct: 597 YGRIYWMKVYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQVFMATSSGFV 656

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
                 E       G   L +++ +++       GD  V +     K++ F   Q+  M 
Sbjct: 657 KKTALMEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQVRSMG 716

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR      G    V      +  + +      + +  N     L  R   G +  
Sbjct: 717 RSASGVRGVHLLQGD-RVVSLIIPKDQSSILTVTENGFGKRTNQSEYPLKSRAIQGVISI 775

Query: 742 KGFPRSGKFLSS 753
           K   R+G  + +
Sbjct: 776 KVTERNGNVVGA 787



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 72/182 (39%), Gaps = 12/182 (6%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + ++ G+++        +  +V + AL+   GD L  A   +  + ++L +  GK   
Sbjct: 647 VFMATSSGFVKKTALMEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVR 706

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                + S       ++  + L     +V+  +      +L V+  G      +SE    
Sbjct: 707 FQETQVRSMGRSASGVRG-VHLLQGDRVVSLIIPKDQSSILTVTENGFGKRTNQSEYPLK 765

Query: 635 TRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           +R   G   +KV+      +  V    GD + +V ++ +L+   + ++  + R  +GV L
Sbjct: 766 SRAIQGVISIKVTERNGNVVGAVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVML 825

Query: 690 QS 691
             
Sbjct: 826 IR 827


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  615 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 272/755 (36%), Positives = 449/755 (59%), Gaps = 25/755 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+ +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +AA+ LID+P+  +  ++ ++ GPD+PT   I+  +  + + YR GR
Sbjct: 182 ATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLLIAYLN+DE+I IIR ED PK V+++RF +TE
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  EI+   + 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRMNTLLKKEIQADADK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD   L++
Sbjct: 477 YGD-----DRRSPLVERAE-AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD         +  + + L  DG++Y+L + ++ S R  GE I   +++N    I   
Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGNDGRSYSLESHSMPSARSQGEPITGRLNINAGTSIRHV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662
            + +     L+ S  G  F+ + S++++  + GK  + + +  ++     ++    D + 
Sbjct: 591 VMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSA 715
            +    ++L+F I  +P++ +GKG ++ +        ++  +S +I       +T + + 
Sbjct: 651 TITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEYVSHLISLPQGSSVT-LYAG 709

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R      +DL  + G+RG  G L+P+G  R  + 
Sbjct: 710 KRKLGLKASDLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 416/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          K     +SAL+
Sbjct: 477 --KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVS 749



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRRTKIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ ++  +       I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFAEKII 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++ +        GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +     + IL
Sbjct: 599 KEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + +   EK   VV V      + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KEI   + +   ++T+  E    + + L     +++   + +   
Sbjct: 590 EKVRDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 649

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  +EGD++  A+     +  +L
Sbjct: 650 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDIL 709

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|332290089|ref|YP_004420941.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
 gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/722 (36%), Positives = 431/722 (59%), Gaps = 22/722 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++  ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +A + L++NP+ S
Sbjct: 121 YQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++++L+ +  PDFPT   I+  +E + + Y  G+G  ++RA W  E+       IV+T +
Sbjct: 181 MDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKED-----GEIVITAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           PYQ   +++IE+IA  +  K++P+++DI+DES  +   R+V+ P++  +D + LM  +F 
Sbjct: 236 PYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL+ RR+ + RR  +R+  +  R+ IL 
Sbjct: 296 TTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILD 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLLIA+LNIDE+I IIRNED+PK  ++SRF+L+E Q +AILNLRLR L KLEE ++++E 
Sbjct: 356 GLLIAFLNIDEVIHIIRNEDEPKQELMSRFALSEEQAEAILNLRLRHLAKLEETELRAEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  E+++++ +L+S K     I  EI +  + ++        R +        KA  +
Sbjct: 416 KQLEQERKQLEKILSSDKNLNQLIKKEIEQDAKTYASP------RLSKIVEREEAKAISE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            A++  EP+TV++S  GW+R  K H +D  +L +K GD+    +   +  +++ L + G+
Sbjct: 470 SALVPVEPVTVILSEMGWVRCAKGHDIDPQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y+L   +L S R  GE I   + L     I    +  +   LL+ S  G  F+    ++
Sbjct: 530 SYSLDPLSLPSARSQGEPITGKLTLPAGAMIEQLLMPKAEQALLMASDAGYGFVCNAEDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKGVRL 689
           I   + GK  + +    K+   V +    V +  +    K+L+F + ++P++S+GKG ++
Sbjct: 590 ITRNKAGKAAISLPENAKVLPPVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKI 649

Query: 690 QSYKDGGISD-----VICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            +             V  F I EG + I  S  R       ++  + G+RG  G+ +P+G
Sbjct: 650 INIPAAKAKAREELLVRLFVIEEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRG 709

Query: 744 FP 745
             
Sbjct: 710 VQ 711


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 232/800 (29%), Positives = 390/800 (48%), Gaps = 67/800 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    E V+ +++   + + +L Y++S I  RA+PD RDG KP  RRI+  M+++G+  
Sbjct: 2   PNQNPNEKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLP 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                K A+IVG+ +G  HPHGDQ++Y +LV +AQP+  R  L+ GQGNFG+++GD  A+
Sbjct: 62  NRKHIKCAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPAS 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+  +   ++  +D++ VDF  TY+E   EPVV P+ FPNLL NG +GIAVGMA
Sbjct: 122 MRYTEARLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E      A IDNP I++++L++Y+ GPDFPTG I ++    I   +  GRG
Sbjct: 182 TNIPPHNLSECINGICAQIDNPNITLDELMQYVKGPDFPTGCI-LQGSAGIRSYFETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             RVR R   EE   G   I+VTEIPY V ++ L+++IAEL   K +  + D+RDES E+
Sbjct: 241 SVRVRGRASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESDEN 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            R+V+  K R  +P +++ ++F  + +E+ F +NM  +     P+++ L   +  ++ HR
Sbjct: 301 TRVVIDLK-RDGNPKVILNNLFKHTALESSFSVNMLAI-DHGRPRLLGLKDAIACYIEHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP---------- 415
           RE++ RR+ F + A +   E L+G LIA  N+D+ I IIR+    D  K           
Sbjct: 359 REIILRRTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARA 418

Query: 416 --------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                         V+  ++  TE QV  IL+LRL  L  LE   IK E D LL     +
Sbjct: 419 AVEQLGVLIRSEARVVDGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDL 478

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L    +    I  E+R +++ +      G  R T  E+         + +I  E + 
Sbjct: 479 MDILAKEHRVLTIIKDELRAIQDKY------GSERRT--EIVPEQGEIAIEDLIANEGVI 530

Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEG------DSLKIALHAHTTDRILLLS 567
           V +++ G+I+          +     +  +  +EG      D ++    A T D ++  +
Sbjct: 531 VTLTHNGFIKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFT 590

Query: 568 TDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF----------VYDSTCKLL 615
            +G+ Y      +  G     G +I  +++L  ++ I               +     ++
Sbjct: 591 VEGRCYVERVFEIPEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIV 650

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             +  G       +E     + G   +++ + +++      TG D + ++      + F+
Sbjct: 651 FATRSGIVKKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFN 710

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
             ++ +  R   GV      D     V    + +    + +      +        +  R
Sbjct: 711 EGELRDQGRNTVGVWGIR-PDTKDYVVAAALVNKEAMLLVAGENGIGKRTGFDEYRIQSR 769

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG G +  K   ++G    +
Sbjct: 770 GGKGIITMKTTDKTGSVAGA 789



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 20/204 (9%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G ++    +         + A+  + GD L         D I+L++ +G +  
Sbjct: 649 IVFATRSGIVKKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIR 708

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              G L   R  G     +  +  +    +V A + +    LLV    G        E  
Sbjct: 709 FNEGEL---RDQGRNTVGVWGIRPDTKDYVVAAALVNKEAMLLVAGENGIGKRTGFDEYR 765

Query: 633 ANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
             +R GK  + + + +K   V      V  D + ++    K++   + +I E  R  +GV
Sbjct: 766 IQSRGGKGIITMKTTDKTGSVAGALTVVETDELMLITNKGKMVRTRVAEIRETGRNAQGV 825

Query: 688 RLQSYKDG----GISDVICFKICE 707
           +L   ++     GI+ V+  +  E
Sbjct: 826 KLIDLRENEILQGIAPVVSNEDEE 849


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/754 (36%), Positives = 451/754 (59%), Gaps = 23/754 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  + ++++++ GPD+PT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RRE + +R  +R+  I  R+ IL+GLL+AYLN+DE+I IIR ED+PK V++ RF +T+
Sbjct: 357 QFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q DAIL+ +LR L KLEE +I+ E + L  E+EK++ LL S ++    +  EI+   E 
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEKLLGSERRMNTLLKKEIQADAEK 476

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           +        RR+   E +   KA  ++ ++  EPITVV+S +GWIR  K H VD S+L++
Sbjct: 477 YGD-----DRRSPIVERAE-AKAMTERDLVPSEPITVVLSEKGWIRHAKGHDVDASSLNY 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           K GD    +    +    + L +DG++Y+L + +L S R  GE I   +++N   +I   
Sbjct: 531 KAGDKYLASARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRQV 590

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVA 662
            + + +   LV S  G  F+ + S++++  R GK  + +    ++     +     D + 
Sbjct: 591 VMGEESQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEIL 650

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAG 716
            +    ++L+F I  +P++ +GKG ++ +    K     + +     + +G T  + +  
Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPSAKAKAREEFVSHLMALPQGATITLYAGK 710

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           R       DL  + G+RG  G L+P+G  R  + 
Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQRVTRI 744


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/758 (36%), Positives = 431/758 (56%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPSFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES     VRIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + +  R  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTHRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I++E D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRNEQDALTKERDEINVILDSDIQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHEVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GKT + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVR 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R+   S  DL  +L  RG  G L+P+G+ +    
Sbjct: 709 YSGERTMRLSFKDLEAYLDTRGSRGHLLPRGWQKIDTL 746


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 246/761 (32%), Positives = 408/761 (53%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ EEN+   SL   L E YL Y+   I +RA+PD+RDG KPVHRRII+AM E+G+    
Sbjct: 2   SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+  RYPLI GQGNFG+IDGD AAA R
Sbjct: 62  PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RMT +++L+ Q +++D + F+  Y++ + EP+V PS FPNLL NG SGIAVGMA++
Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A +  IDNP +++E+L+E + GPDFPTGG+I+ S +   E+YR GRG  
Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +  +E    G   IV+TEIP+QV KS L  KI       +I  + ++RDES  +  
Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  DP  +++ ++  + ++  F +   V+S    P+V+ L  I   +L HRRE
Sbjct: 301 RLVVECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRRE 360

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427
           V+ RR+ + +     R  IL+GL+IA  N+DE++ IIR+   P   K  +++RF  +E Q
Sbjct: 361 VVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQ 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++L+ L  LE   I+ E   +L    +++S+L    + +  I  E++++ + + 
Sbjct: 421 AQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQYG 480

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----KSHSVDLSAL 543
                  RRT        D+         ++P+ V+++ +G+I+ +    +   ++  A 
Sbjct: 481 DE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIAF 535

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601
            FK+GD L   +   + D +   +  GK Y   A  +     +  G A+  L  L   + 
Sbjct: 536 AFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEER 595

Query: 602 IVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           IV              + V+  G        + +         + +  ++++  V    G
Sbjct: 596 IVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAG 653

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--ISDVICFKICEGLT--WI 712
           +  + +     + + F+  ++  M R  +GV+  +  +G   +  ++     +G T   I
Sbjct: 654 EGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLI 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLS 752
               + Y +  +        R G G  + K    ++G  +S
Sbjct: 714 TVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDAEKTGYLVS 754


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 408/755 (54%), Gaps = 28/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   ++  YL YA+S I  RA+PD RDG KPV RR+++ M  +G+    A+KKS
Sbjct: 8   RVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD S+YD++VRLAQP+  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 68  ARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             ++ EL+LQ +DED VD+   ++E   EP+  PS  PNLL NG++GIAVGMAT++P HN
Sbjct: 128 FAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A   LID+PE  + +L+ Y+ GPDFPTGGII+  RE IV++YR GRG   VR R
Sbjct: 188 LGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIM-GREGIVDAYRTGRGKIIVRGR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE G+    +V+TEIPY V K+ LIE IA+ +    I  + D+RDES      ++  
Sbjct: 247 CVVEE-GKRRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLD 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            NR  DP+L+   ++  + M++ F +    L   R  + + L  +L+ +L +RR+V+ RR
Sbjct: 306 LNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVE-LGLKSMLEVFLDYRRDVVRRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAIL 432
           ++FR+     R  I++GL  A   IDE+I IIR     +        +   +E Q  AIL
Sbjct: 365 TAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++ +E+  LLA+  +   +L   K     I  E+ E++  F      
Sbjct: 425 DMRLQRLTGLERDKLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKF------ 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G +R T  ++     +   + ++ +E I + +S  G++R                    +
Sbjct: 479 GDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGAN 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDIV 603
             E D +   +   T + +LL ++ G+ + +    +   + G G  ++  I L+  + +V
Sbjct: 539 LHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMVPETKSGKGRKVEQFISLSEGETVV 598

Query: 604 TAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660
                  D+   +++++ +G A  +++SE+   TR G+  + +   + +  +    G D 
Sbjct: 599 EILGRFPDNCSTVVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDDIARIRCTNGLDD 658

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRS 718
           + +V    + L  S D+I  M R  +GV+      G   ++I  ++  G +  +  + R 
Sbjct: 659 LFLVSAMGRGLRISEDEIRTMGRSARGVKAMKL--GKDDEIISCEVIAGDSRILLVSQRG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  +     +  R   G    +   R+G+   +
Sbjct: 717 IGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVA 751



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 15/236 (6%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHS------VDLSALHF 545
           GR+   F  +S  +                V+I+ RG  + +               +  
Sbjct: 582 GRKVEQFISLSEGETVVEILGRFPDNCSTVVLITRRGIAKRMDKSELQNLTRAGRQIMTL 641

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            +GD +      +  D + L+S  G+   +    + +       ++ +  L  + +I++ 
Sbjct: 642 DDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMGRSARGVKAM-KLGKDDEIISC 700

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV--TGDHV 661
            V     ++L+VS +G   I    E   + R   G+  +++        V       D V
Sbjct: 701 EVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVANTVFPDDEV 760

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           A++     ++  ++D IP++ R   G  L   ++G   +V    +      + S G
Sbjct: 761 ALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENG--DEVANVSLIHKEDLVQSGG 814


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 416/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          K     +SAL+
Sbjct: 477 --KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 148/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRRTKIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ ++  +       I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFAEKII 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++ +        GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +     + IL
Sbjct: 599 KEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + + + EK   VV V      + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KEI   + +   ++T+  E    + + L     +++   + +   
Sbjct: 590 EKVRDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 649

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  +EGD++  A+     +  +L
Sbjct: 650 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDIL 709

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 235/767 (30%), Positives = 391/767 (50%), Gaps = 36/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  + ++ V L+  ++  +L YA+S I +RA+P++RDG KPVHRR+I+AM + G     +
Sbjct: 60  VTHDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRS 119

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F KSAR+VGEV+G+ HPHGD S+YD+LVRL QP+  RYPL  GQGNFG+   D AAA RY
Sbjct: 120 FFKSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRY 179

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE +M  +A  +++ + ED VDF+D Y+    EP + PS+FPNLL NG+ GIAVGMAT+I
Sbjct: 180 TETKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNI 239

Query: 192 PSHNVQEICEAALALIDNPEISI----EKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           P HN++E+   A  L+ +P+ +     E LLE I GPDFPTG  ++   + I+E+YR GR
Sbjct: 240 PPHNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVL-GTKGILEAYRTGR 298

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SA 306
           G   +RA   VEE+ +G  C+VVTE+PYQV    L  KIAEL+   ++  + DIRDE S 
Sbjct: 299 GSITMRAVVAVEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSG 357

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              + ++    R     +++ +++  + ++  F  NM  +  G +P+ + LDG +  W+ 
Sbjct: 358 RTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLALDGFISAWVD 416

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ +V+ RR+ +R+   + R  IL+G L A   +D++IA+IR  +     +  ++    +
Sbjct: 417 HQIDVIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMKLLDI 476

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I+ +   L     + + +L +   Q   I+ E++E+ 
Sbjct: 477 DELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYNHILATPTVQREIISTELQEIT 536

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           + +        RRT    +   D     + +I +E + V ++  G+I+            
Sbjct: 537 DKYGD-----DRRTEI--MLGFDGDMSMEDLIPEEEMVVTVTRGGYIKRTRIDNYRSQHR 589

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593
               +     +  D ++      T   +L L+  G+ Y   A  L        G+ +  L
Sbjct: 590 GGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEAGRDAKGQHVANL 649

Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  +++I        Y     L++ +  G       +E   N   G   + +   + +
Sbjct: 650 LAMQPDEEIQQVLDIRDYQVAQYLVLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDAL 709

Query: 651 KLV-VKVTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
               +    D + +V      L FS D   +  M R   GV+  +++             
Sbjct: 710 VSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVKGMTFRGDDTLLSASVVGE 769

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +G  ++ + G  + +        +  RGG+G  V K     G    +
Sbjct: 770 QGYVFVVTEG-GFAKRTAADQYRVQNRGGMGIKVAKLQDARGDLAGA 815



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 23/219 (10%)

Query: 522 VVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V+ +  G ++       D +      A++ ++GD+L  AL     D +LL+S  G +   
Sbjct: 674 VLATRDGLMKKTALTEYDTNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRF 733

Query: 576 PAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            A N  + R  G +   +  +    +  +++A V      + VV+  G A      +   
Sbjct: 734 SADN-QALRPMGRSTSGVKGMTFRGDDTLLSASVVGEQGYVFVVTEGGFAKRTAADQYRV 792

Query: 634 NTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV- 687
             R G      K+     +    ++    D + VV  + K++   + ++P   R   GV 
Sbjct: 793 QNRGGMGIKVAKLQDARGDLAGALIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVV 852

Query: 688 --------RLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
                   R+ S       +++  +     +   +AG+ 
Sbjct: 853 FARFADDDRIISLAKNSERNLVVPEAAPDASDGTAAGKG 891


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 237/770 (30%), Positives = 391/770 (50%), Gaps = 53/770 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+IP H
Sbjct: 138 LRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPEI+ ++L++ I GPDFPTGG I+  RE I E+Y  GRG   +R 
Sbjct: 198 NLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQIL-GREGIRETYLGGRGSVTMRG 256

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  D  
Sbjct: 257 VANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGM 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ ++F L+ +++ F   M  L  G    ++ L  +L+ +L  R E
Sbjct: 317 RIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPI-LLTLRKMLEVFLDFRVE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L++ Q
Sbjct: 376 TIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLSDIQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ +++E + 
Sbjct: 436 ADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYP 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
                  RRT   E+           +I  E   V+++  G+++ +     + ++   + 
Sbjct: 496 TP-----RRT---EILDLGGGLSDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 547

Query: 547 -------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
                    D++K+ +  +  D ++L S  G +Y LPA  +   S    G  +  L+ + 
Sbjct: 548 KAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIP 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I T      +     L++++  G       S        G   + +   + +  V 
Sbjct: 608 REEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVR 667

Query: 655 K-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVICFKICE 707
             V GD V +  +    + F +   ++  + R  +GVR  + +D       DV+  ++ +
Sbjct: 668 LAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDADALVSMDVLPVELAD 727

Query: 708 ---------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                          G   + ++     +        L KR G+G    K
Sbjct: 728 QVAASADDEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 777



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 31/239 (12%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                A    +  +    +   V+++  G+I+  +  +        L A++ +EGD+L  
Sbjct: 606 IPREEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLLIDLNH--NQDIVTAFV 607
              A   D +L+ S  G    + L    L  L     G     L D +   + D++   +
Sbjct: 666 VRLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDADALVSMDVLPVEL 725

Query: 608 YDS--------------TCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKM 650
            D                  +LV S+ G    V  ++     R G     +K  ++ +++
Sbjct: 726 ADQVAASADDEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADEL 785

Query: 651 K-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             L V   G+ + +V E   ++  S D IP+ SR   GVRLQ    G     +     E
Sbjct: 786 VGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPE 844


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/757 (34%), Positives = 414/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TVFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDK--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRTT  E        L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 478 --RRTTIEEER---MEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   + S  +++ ++  G        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFSSEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRRTTIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ R+          I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSALNTIEDDFAEKII 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++ +        GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +     + IL
Sbjct: 599 KEFSSEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + + + EK   VV V      + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVNEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 80/220 (36%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KE+   + +   ++T+  E    + + L     +++   + +   
Sbjct: 590 EKVRDTIVIKEFSSEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 649

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  +EGD++  A+     +  +L
Sbjct: 650 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDIL 709

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+    +   +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVNEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 278/767 (36%), Positives = 423/767 (55%), Gaps = 44/767 (5%)

Query: 6   ISNSNTLVE-------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           ++   TL +       +  + ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MTEQATLFDGDTPEPPDGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM+++GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNF
Sbjct: 61  FAMNQLGLNAAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T ++ L+L  +D   VDF+  Y+    EP + P + P +L N
Sbjct: 121 GSRDGDGAAAMRYTEARLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVGMAT IPSHN++E+ +AA+ALI NP ++  +L+  I GPDFP+GG I+ S  +
Sbjct: 181 GASGIAVGMATEIPSHNLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAA 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-------- 290
           + E Y  GRG  +VRA W +EE+ RG W  VVTE+P+     +++E+I EL         
Sbjct: 241 LSEMYANGRGSLKVRALWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGK 300

Query: 291 ----------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES  +  VR+V  PK+++ D       +   + +ET 
Sbjct: 301 KALSPDQLAQKQLMLSLLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETS 360

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             +N+ ++     P+   L  IL+EW+A R + + RRS FR++ ++ R+ IL+G     L
Sbjct: 361 ASINLVMIGGDGRPRQKGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILL 420

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK
Sbjct: 421 NIDEVIRIIRESDEPKPALMGAFKLSDRQAEDILEIRLRQLARLEAIKIQQELAGLRTEK 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++ LLN+       I  EI   ++ F  +      R T  E +        +  +  E
Sbjct: 481 STLEELLNNPGAMKKLIIKEIDADEKRFGDA------RRTLIEAAERATV---EQKVIDE 531

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVVIS +GW+R+   H  D +   FK GD L       T D +L   ++G+ Y++   
Sbjct: 532 PVTVVISQKGWLRARTGHGHDPAQFAFKAGDDLYRTFECRTLDSLLAFGSNGRIYSIAVS 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L   RG G  I  L++L     ++  F   +   +L+ S+ G  FI   +++I   + G
Sbjct: 592 SLPGARGDGAPISALVELASGSTVLHYFAGSADSTMLLASTAGYGFIARAADMIGRNKAG 651

Query: 639 KTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
           K F+ + + +       +  +   VA +    +LL+F +D++  MS G+G+ L + +DG 
Sbjct: 652 KAFITLDAGDLPLPPQMLIPSASSVACLSGEGRLLVFGLDELKTMSGGRGMILMALEDGE 711

Query: 697 ISDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
              +    + +    +   GR         S   L    GKR   G 
Sbjct: 712 -KLLAAQPVSQRGVLVSGIGRGGKTQEVSLSATGLALHTGKRARKGK 757


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/794 (31%), Positives = 421/794 (53%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RY  I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + ++E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKIHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +  ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSEILLENLIRDELKEIRNKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 ITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK--LVVK 655
            I+       +D +  L   +  G       SE       G   + +   +++   ++V+
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 656 VTGDHVAV-----------------------------------VGENRKLLIFSIDQIPE 680
              D + +                                   V +    + F + ++ E
Sbjct: 657 RDEDEILLSGSEENLENQEIKNLDDENLENEESASIKGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAIVIENDEQEILSVSAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 83/236 (35%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V       + S    +++   +   + ++L+    A    ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEILLSGSEENLENQEIKNLDDENLENEESASIKGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V A V +    ++L VS+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAIVIENDEQEILSVSAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/773 (31%), Positives = 387/773 (50%), Gaps = 55/773 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGN-HSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 417 -----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +      G  R T  E    +     + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKY------GDERRTAIEPISGEVDI--EDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +  G  +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + +       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             ++            + +  +    + Y R        +  RGG G    K 
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 16/231 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  R           E +   + ++  G I+    +         L A+   EGD +
Sbjct: 621 QLDEGERIAAMMKTSDFAENKYF-ICVTKYGKIKRTPLYDFRNVRKNGLRAITLAEGDEI 679

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDS 610
             A        I++ +  G A       + S       ++  I L  +  IV  A VY  
Sbjct: 680 AAAHLTEGDSSIIIATHLGMAIHFSEDKIRSMGRLAAGVRA-IKLREDDYIVGAAKVYSD 738

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
             ++L V+ KG   +   S+     R G         +    V  +    T D V ++  
Sbjct: 739 DMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYVCGIRSIQTDDDVILIST 798

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  ++    + +  M R G GVR+    D     V+ F   E     D   
Sbjct: 799 DGVIIRIRANDLRVMRRTGLGVRVMKLSDE--DRVVTFTRTEHDETADIEE 847


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/759 (35%), Positives = 431/759 (56%), Gaps = 33/759 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  E +   S+    E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GL   A 
Sbjct: 13  LANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAK 72

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
            KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   D  S AA R
Sbjct: 73  AKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMR 132

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M+  A  +L  + +  VD++D ++    EP   P++ PN+L NGT+GIAVGMAT 
Sbjct: 133 YTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTGIAVGMATD 192

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ +   Y  GRG +
Sbjct: 193 IPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAMYETGRGSY 252

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           ++RA + +    +    +++  +PYQV  +++ E+IA+L+  K++P + DI DES  +  
Sbjct: 253 KMRATFHI--DPKEKNLVIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIHDESDHENA 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            RIVL  ++  +D D +M  +F  +D+E+ + +NMN++ +   PQV  L  IL+EWL  R
Sbjct: 311 CRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCR 370

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R V+ RR  +R+  ID+R+ IL GLLIAYLNIDE+I IIR ED PK  ++  + LT+ Q 
Sbjct: 371 RSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTDIQA 430

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL++RLR L KLEE +++ E D L AE+  I   L++       +  E+       + 
Sbjct: 431 NAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTTLMIDELT------AD 484

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             + G  R +        +A  +  ++  EPIT V+S  GWIR+ K H VD + + ++ G
Sbjct: 485 MKEHGNERVSPLAEREEAQALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAAGMSYRSG 544

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+ +  +   + ++I +L + G++Y++ A +L S RG G+ +  ++              
Sbjct: 545 DAYQAHVRGKSNEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQLLTG 604

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---------- 658
               ++++ SS+G  FI     + +N + GK  + +++  ++  +  +            
Sbjct: 605 ADDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVSAEN 664

Query: 659 ------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706
                       DH+AVV     LLIF++D +PE +RGKG ++ + K       I     
Sbjct: 665 NGISDTENSSTPDHIAVVTNAGYLLIFALDDLPEQARGKGNKMITLKGDEEVLTITPLSK 724

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           +    I +  R       DL  +  KRG  G  +P+GF 
Sbjct: 725 QDSLIITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGFQ 763


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 417/757 (55%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE+ +I +E   + A  +++  +L    + +  +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEKEKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          K     +SAL+
Sbjct: 477 --KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +  + A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVS 749



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEKEKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYNDKRRTKIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ ++  +       I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSALNTIEDDFAEKII 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++ +        GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDKGKVYNIRAYEIPDLSKQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +     + IL
Sbjct: 599 KEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + +   EK   VV V      + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KEI   + +   ++T+  E    + + L     +++   + +   
Sbjct: 590 EKVRDTIVIKEFSPEKEIVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 649

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  +EGD++  A+     +  +L
Sbjct: 650 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDTVVSAMLIKNPETDIL 709

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVSEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/804 (31%), Positives = 395/804 (49%), Gaps = 82/804 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GVGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILNLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR   +    K  +++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K  F+       RRT             ++ +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTSFATP-----RRTVITHAEG---EIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D+++  L     D +L  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTSRGTPIVQ 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I +    D       L++++  GN    E +        G   + +   ++
Sbjct: 592 LLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQ 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSI--DQIPEMSRG-KGVRLQSYKDG---------- 695
           ++ V +   +   +VG      + F    +Q+  + R  +GV+    K G          
Sbjct: 652 LRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILP 711

Query: 696 ------------GISDV------------ICFKICEGLTWIDSAG-------------RS 718
                        I D+               +  E L  ++ +                
Sbjct: 712 AAILDTLNTEEPDIDDIETEDIETAVETTEVLETLENLEAVEVSSTASVGPWVLVITMGG 771

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
           Y +        L  R G G +  K
Sbjct: 772 YGKRVPVSQFRLQNRAGQGLMATK 795



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           +R L   +  + ++  K+GD L     L A   D +   + +     +   ++ +     
Sbjct: 683 LRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLN--TEEPDIDDIETEDIETAVETT 740

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--- 644
           E ++ L +L   +   TA V      +LV++  G    V  S+     R G+  +     
Sbjct: 741 EVLETLENLEAVEVSSTASVGP---WVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFK 797

Query: 645 --SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISD 699
              +++K+  +  V  D  + +V     ++  +++ I   SR   GVR+Q   +D  I+ 
Sbjct: 798 NRKTKDKLATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITG 857

Query: 700 VICFKICEG 708
           V       G
Sbjct: 858 VAIVPPDTG 866


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 273/834 (32%), Positives = 415/834 (49%), Gaps = 112/834 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E+G      ++KSAR V
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD ++YD+L R+AQ F    PL+ GQGNFG++DGD  AA RYTE RM + 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L  +D+D VDF+D Y+ +D EP V P +FPN+L NG  GIAVGMAT+IP HN+ E+
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALIDNP++S+E+L++Y+ GPDFPTGG+++  R    ++Y  GRG   +RA+  VE
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLL-GRSGARKAYTEGRGSCIIRAKTHVE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES      V+    R 
Sbjct: 240 ELRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  +F  + M+T F  NM  L+ G  P+ + L G L  +++ R EV+ RR+++ 
Sbjct: 300 ATPDVVLNQLFRFTPMQTYFGCNMLALN-GGRPETLTLYGFLSNFISFREEVVARRTAYL 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------------------- 418
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 359 LRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDD 418

Query: 419 --------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 419 PTHRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRER 478

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+REVKE+F+       RRT   E+         + +IE+  + V I+  G+I
Sbjct: 479 IMQIISDELREVKELFAVP-----RRT---EIVDWSGDMEDEDLIERAEMVVTITQSGYI 530

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          K     LS +  K+ D +     A+T  ++L  +TDG  Y L    L  
Sbjct: 531 KRTPLEDYRAQKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPL 590

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIAN 634
                 G+AI  ++ +     I      D   K      ++  +S G       S+    
Sbjct: 591 GGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNV 650

Query: 635 TRKGKTFLKVS-SEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRG----K 685
              GK  +K     E M+L+   +    D V +  ++ + + F  D +    SR     +
Sbjct: 651 KSNGKIAMKFEGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVR 710

Query: 686 GVRLQSYKDGGISDVIC------------------------------------------- 702
           GVRL + KD   S  +                                            
Sbjct: 711 GVRL-NEKDEVASMFVLPTFPAESDERASYLKMRRAMAGDVEQTTDEEEGNADMPLPQDR 769

Query: 703 ---FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  E L    +AG + + S +      G RGG+G    +   R+G+ +++
Sbjct: 770 YAEMSAAETLILTITAGGAGHISSSHDYPLRG-RGGMGVTAWEKTMRTGEIIAA 822



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 38/216 (17%)

Query: 518 EPITVVISNRGW-IRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           E   ++ +  G  IR             SV +  +   E D +       T        +
Sbjct: 678 EDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEVASMFVLPT----FPAES 733

Query: 569 DGKAYTLP-----AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           D +A  L      AG++       E    +  L  ++    A +  +   +L +++ G  
Sbjct: 734 DERASYLKMRRAMAGDVEQTTDEEEGNADM-PLPQDR---YAEMSAAETLILTITAGGAG 789

Query: 624 FIVEESEIIANTRKGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
            I    +     R G         + + E +        D V +     + +   +D I 
Sbjct: 790 HISSSHDYPLRGRGGMGVTAWEKTMRTGEIIAAFPVEMDDQVMLATSKGQSIRVPVDGIS 849

Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             SR  G             V  F   +G T +  A
Sbjct: 850 FRSRSAG------------GVRVFNTGKGETVVSVA 873



 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 529 WIRSLKSHSVDLSALHFKEG---------DSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +++  ++ + D+     +E          D       A T   IL ++  G  +   + +
Sbjct: 739 YLKMRRAMAGDVEQTTDEEEGNADMPLPQDRYAEMSAAETL--ILTITAGGAGHISSSHD 796

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-- 637
                  G  +          +I+ AF  +   ++++ +SKG +  V    I   +R   
Sbjct: 797 YPLRGRGGMGVTAWEKTMRTGEIIAAFPVEMDDQVMLATSKGQSIRVPVDGISFRSRSAG 856

Query: 638 GKTFLKVSSEEKMKLVVKVTGD 659
           G         E +  V ++   
Sbjct: 857 GVRVFNTGKGETVVSVARIAEQ 878


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 246/738 (33%), Positives = 382/738 (51%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++ +   ++  +L YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSAR 
Sbjct: 25  SIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM  
Sbjct: 85  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDA 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L+ +D+D VDF+D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+ P++S E+L+EY+  PDFPTGGII+  R    ++Y  GRG   +RA+   
Sbjct: 205 VIDACQALIEKPDLSSEELIEYVPAPDFPTGGIIL-GRSGAQKAYIEGRGSVIIRAKTRT 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IE+IAEL+  K+I  +  + DES      V+    R
Sbjct: 264 EEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGVADESDRIGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + M+T F  NM  L+ G  P+ + L G L  +L  R EV+ RR++F
Sbjct: 324 DATPEVVLNQLFRFTQMQTSFGCNMLALN-GGKPEQLTLRGFLTSFLDFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409
            ++    R  +L GL +A  N+DE++A IR                             +
Sbjct: 383 ELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALMTRAWPAEEILPFIKLID 442

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +          ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + +   ++L S +
Sbjct: 443 DPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKDYLAILASRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+ EV+  F+       RRT   E S        + +IE+  + V I+  G+
Sbjct: 503 RILEIISNELAEVRAKFAV-----DRRTEIVEWSG---DMDDEDLIERSDMVVTITQGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     ++    K+ D +     A+T   +L  +T G  Y L    L 
Sbjct: 555 IKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFTTGGMVYKLKTWRLP 614

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
           SG     G+AI  ++ +     I      D         +++  + +G       S+   
Sbjct: 615 SGSRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTDRGTVRRNALSDFAN 674

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRG-KGV 687
             R GK  +K   + +    +   +    D V +V +  + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPATDVRVFNSRASTGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R      G   +V+   I
Sbjct: 735 RGIKL--GKDDEVVSMSI 750



 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 81/275 (29%), Gaps = 67/275 (24%)

Query: 500 CEVSRADKATLQQAMIE---KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDS 550
            E+     A +     E    E   V  ++RG +R                A+ F EGDS
Sbjct: 631 IEIGTGIAAIMPVDRDEEHWDELQVVFCTDRGTVRRNALSDFANVMRNGKIAMKF-EGDS 689

Query: 551 ----LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
               +  A  A   D ++L++  G+A   PA ++             I L  + ++V+  
Sbjct: 690 EGWRMINARIASNDDDVMLVTKQGRAIRFPATDVRVFNSRASTGVRGIKLGKDDEVVSMS 749

Query: 607 V---YDSTCK---------------------------------------------LLVVS 618
           +   +D+                                                +L ++
Sbjct: 750 IIRHFDAEASERAAYLKQRRLMAGVTEEAETDEDDVPEGDLSPERYAEMSAAEDLILTIT 809

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFS 674
           S G   +    +     R G+    +        +     V   D + +     + +   
Sbjct: 810 SGGLGKLSSSHDYPVRGRGGQGVSAIDKAMRGGTLIASFPVEMDDQIMLATSTGQSIRVP 869

Query: 675 IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           ID I   SR   GV++ +   G     + +   +G
Sbjct: 870 IDGISFRSRSAGGVKVFNTAKGEDIVSVAYIADQG 904


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/804 (30%), Positives = 394/804 (49%), Gaps = 82/804 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  +E +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++D D  AA R
Sbjct: 62  PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +    +LQ ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +A+I NPEI+  +L++YI GPDFPTG  I+    +I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GMGAIKEAYTTGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES
Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R   P +++ +++  + ++  F  NM  L  G  PQ++ L   L  +L
Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILTLKQFLNVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  ++D II +IR+       K  +++ + 
Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELITTYM 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++
Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K  F+       RRT             ++ +I  E   ++++ +G+I+ +  ++ +   
Sbjct: 480 KTSFATP-----RRTVITHAEG---EIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A   K+ D+++  L     D +L  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSSRTSRGTPIVQ 591

Query: 593 LIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ +   + I +    D       L++++  GN    E +        G   + +   ++
Sbjct: 592 LLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIRANGLIAISLEEGDQ 651

Query: 650 MKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG-KGVRLQSYKDG---------- 695
           ++ V +    D + +       + F    +Q+  + R  +GV+    K G          
Sbjct: 652 LRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKLKKGDELVGMDILP 711

Query: 696 ------------GISDV------------ICFKICEGLTWIDSAGR-------------S 718
                        I D+               +  E L  ++ +                
Sbjct: 712 AAILDTLNTEEPDIDDIETEDIETAVETTEVLETLENLEAVEVSSNASVGPWVLVITMGG 771

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
           Y +        L  R G G +  K
Sbjct: 772 YGKRVPVSQFRLQNRAGQGLMATK 795



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 15/189 (7%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           +R L   +  + ++  K+GD L     L A   D +   + +     +   ++ +     
Sbjct: 683 LRPLGRATRGVKSMKLKKGDELVGMDILPAAILDTLN--TEEPDIDDIETEDIETAVETT 740

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--- 644
           E ++ L +L   +    A V      +LV++  G    V  S+     R G+  +     
Sbjct: 741 EVLETLENLEAVEVSSNASVGP---WVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFK 797

Query: 645 --SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISD 699
              +++K+  +  V  D  + +V     ++  +++ I   SR   GVR+Q   +D  I+ 
Sbjct: 798 NRKTKDKLATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITG 857

Query: 700 VICFKICEG 708
           V       G
Sbjct: 858 VAIVPPDTG 866


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/794 (31%), Positives = 417/794 (52%), Gaps = 66/794 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SE  V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLI +IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKPHIEK-KTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + +   +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKCTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 656

Query: 658 GDH-------------------------------------VAVVGENRKLLIFSIDQIPE 680
            D                                      +  V +    + F + ++ E
Sbjct: 657 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 716

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           + R  +GV    +K+     V    I  +    +  + +   +  N     L  RGG G 
Sbjct: 717 IGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGV 776

Query: 739 LVPKGFPRSGKFLS 752
           +  K   ++   +S
Sbjct: 777 ICMKLTEKTKDLIS 790



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP----- 519
           L + ++    I     +  +     T  G  + T     +  ++   +A+   E      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKCTNLSEYQNIRSVGVRAINLDENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 712 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 256/757 (33%), Positives = 416/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+++Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRVGIIDAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   +    +++  +L    + ++ +  E+ E+KE +      
Sbjct: 421 DMKLQRLTGLEREKIDTEFKEIETLIKELREVLEDNNKIYDIMKKELLELKEKY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
           G +R T  E  R +   L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 475 GDKRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +    A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++ KG        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFSPEKEVVFITKKGLIKKTSLGEFKNINNSGLIAIKTREDDDLIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + ++G                +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVS 749



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDTEFKEIETLIKELREVLEDNNKIYDIMKKELLELKEKYGDKRRTKIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ R+  +       I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKIT 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++          GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDRGKVYNIRAYEIPDLSRQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+ +G I+              L A+  +E D L     +     + IL
Sbjct: 599 KEFSPEKEVVFITKKGLIKKTSLGEFKNINNSGLIAIKTREDDDLIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + + + EK   VV        + +  +  N  ++  SI +I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTEDEELMCITSNGIVIRTSISEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 13/173 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLK 552
           E        L + + ++E   ++ ++ G+        IR+    +  + A+  +EGD++ 
Sbjct: 639 EDDDLIFVGLIEDVNKEE--ILIATHDGYCTRFLTDTIRATGRSTQGVKAITLREGDAVV 696

Query: 553 IALHAHTTDRILL-LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
            A+     +  +L ++ +G                G+ +  L        +V+       
Sbjct: 697 SAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASEKTGKVVSVLEVTED 756

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
            +L+ ++S G       SEI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 757 EELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEEL 809


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 244/773 (31%), Positives = 387/773 (50%), Gaps = 55/773 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   + E +L Y+++ +  RA+PD+RDG KPVHRRII+ M+E        ++K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A  VGEV+GK HPHGD SVYD+LVRLAQ F  RYPLI G GNFG++DGD  AAYRYTEA
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L+ + +D +D+   Y+++  EP V P KFPNLL NG+ GIAVGMAT+IP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+C+A +A +DNPE  IE++L+YI GPDFPTGGII+     I  +Y  GRG   +R 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E G     I+VTEIPY V KS+L+E   +L+  KRI  + ++RDES +D   +++
Sbjct: 252 KAEIVEEGN-HSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVY 310

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R ++  +++  ++  + ++    + M  L  G  P+ + L  IL  ++A +++++ R
Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------ 416
           R++F ++    R  IL+G L+A  NIDE+I+I+R+    +                    
Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429

Query: 417 -----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                            L+E Q DAI+ +RL  L  LE  ++ SEL  ++ +      +L
Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +S ++    I  EI  +KE +      G  R T  E    +     + +I +E   +  +
Sbjct: 490 SSDERVKEIIKEEITAIKEKY------GDERRTAIEPVSGEVDI--EDLIPEEECVLTYT 541

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           N G+I+          K     +S +  +E D ++    + T D IL ++  G  Y L  
Sbjct: 542 NIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKC 601

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII 632
             +  G  +  G  I  L+ L+  + I        +      + V+  G        +  
Sbjct: 602 YEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFR 661

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              + G   + ++  +++       GD  + V       + FS D+I  M R   GVR  
Sbjct: 662 NVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAI 721

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
             ++            + +  +    + Y R        +  RGG G    K 
Sbjct: 722 KLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI 774



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 16/231 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  R           E +   + ++  G I+    +         L A+   EGD +
Sbjct: 621 QLDEGERIAAMMKTSDFAENKYF-ICVTKYGKIKRTPLYDFRNVRKNGLRAITLAEGDEI 679

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDS 610
             A        I++ +  G A       + S       ++  I L  +  IV  A VY  
Sbjct: 680 AAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRA-IKLREDDYIVGAAKVYSD 738

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666
             ++L V+ KG   +   S+     R G         +    V  +      D V ++  
Sbjct: 739 DMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYVCGIRSIQADDDVILIST 798

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +  ++    + +  M R G GVR+    D     V+ F   E     D   
Sbjct: 799 DGVIIRIRANDLRVMRRTGLGVRVMKLSDE--DRVVTFTRTEHDETADIEE 847


>gi|332968503|gb|EGK07566.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Psychrobacter sp.
           1501(2011)]
          Length = 766

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 282/762 (37%), Positives = 440/762 (57%), Gaps = 27/762 (3%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           + NI  S T++  E +   S+    E+ YL YA+  I +RA+P + DG KPV RRII+AM
Sbjct: 4   ISNIPPSATVIPTEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAM 63

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-N 120
           SE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G  
Sbjct: 64  SELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLITGQGNWGSP 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            D  S AA RYTEA+M+  A  +L  + +  VD++D ++    EPV  P++ PN+L NGT
Sbjct: 124 DDPKSFAAMRYTEAKMSAYANTLLAELAQGTVDWQDNFDGSMQEPVTLPARLPNILLNGT 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT IP HN+ E+  AA+ L+ NPE+S+++L + I  PD PT   I+ S++ + 
Sbjct: 184 TGIAVGMATDIPPHNLNEVVRAAVRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQ 243

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  GRG +++RA + V    +    +++  +PYQV  +++ E+IA+L+I K++P + D
Sbjct: 244 AMYESGRGSYKMRAVYHV--DKQEKNLVIIDALPYQVSGNKIQEQIAKLMIEKKLPWVVD 301

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           I DES  +   RIVL  ++  +D D +M  +F  +D+ET + +NMN++ +   PQV  L 
Sbjct: 302 IHDESDHENACRIVLELRSTRVDVDRVMSHLFASTDLETSYRVNMNMIGLNGKPQVKNLK 361

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL+EWL  RR+V+ RR  FR+  ID+R+ IL GLLIAYL+IDE+I IIR ED PK  ++
Sbjct: 362 EILEEWLVSRRQVVTRRLLFRLDKIDKRLHILAGLLIAYLHIDEVIRIIREEDDPKTELM 421

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +R+ L+E Q +AIL++RLR L +L+E ++++E D L AE+  I  LL++ +   N +  E
Sbjct: 422 NRYDLSEVQANAILDIRLRQLARLQEIELRTEKDELEAERAIIQELLDNPESLTNLMIEE 481

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +       +   + G  R +         A  +  ++  EPIT ++S  GWIR+ K H V
Sbjct: 482 LE------ADMKEHGNNRVSPVVERNEATALKESDLVPSEPITAILSKAGWIRAAKGHDV 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D + + ++ GDS +  + + + ++I ++ + G++Y + A  L S RG G+ +  ++    
Sbjct: 536 DAAGMSYRSGDSYQAHIRSKSNEKIYIMDSTGRSYNIDAHTLASARGQGDPLTSVLKPAS 595

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
                     +   ++++ SS+G  FI     +  N + GK  +    + K+  V  +  
Sbjct: 596 GASFEQLLAGEDEQRIILASSQGYGFINTLGNLETNQKAGKNVINFDQDAKLLKVAYIDA 655

Query: 659 ---------------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703
                          D +AVV     LLIF ID++PE  RGKG +L + KDG     +  
Sbjct: 656 KPISDEDTGSEAQAQDQIAVVTSAGYLLIFDIDELPEQQRGKGNKLINLKDGEQVIAVTP 715

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                   + +  R       DL  + GKRG  G  +P+GF 
Sbjct: 716 IHHSDSLTVTAGKRHVTLKPMDLANYTGKRGNRGGQLPRGFQ 757


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/755 (32%), Positives = 403/755 (53%), Gaps = 27/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRR++HAM+E        + KS
Sbjct: 34  RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD +VY+++VR+AQ F  R  LI GQGNFG++DGD+AAAYRYTEAR
Sbjct: 94  AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T++AE +L+ ++++ V F   +++   +P V P+ FPN+L NG++GIAVGMAT+IP HN
Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E   A +ALI NP+I++ +L++ + GPDFPTG   +   E + ++Y  G+G  R+R++
Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTG-GTIIGGEGLYQAYATGKGSIRIRSK 272

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + E  +G   IV+ EIPYQV K  ++EKI +L+  K I  + +I D S      V   
Sbjct: 273 VDIIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIH 332

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  +F L+ ++  + + M  +     P++  L  ILK +  HRREV+ +R
Sbjct: 333 VKKDANAQVILNQLFKLTQLQVSYGITMLAILDN-RPKIFSLKEILKSYAEHRREVVVKR 391

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
           + F +    +R  IL+GL IA  NIDE+I IIR     +      ++ FSL+E Q DAIL
Sbjct: 392 TEFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAIL 451

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      ++ +L+   +  + I  E+ +V + F      
Sbjct: 452 EMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPDRVKSIICDELGKVSQSF------ 505

Query: 493 GRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSAL 543
           G  RTT   +   + +T   + +I  E + V +S   +I+          K     +  +
Sbjct: 506 GNTRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGI 565

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             K  D +K    A T D ++L S  G+A+ L    L        G++++ +I+LN ++ 
Sbjct: 566 STKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEI 625

Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           I + F +       LL+V+ +G    ++  E     + G   + +   +++  V+    +
Sbjct: 626 ITSLFTFRNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNN 685

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             V +  +N   +  +++++    R   GV     +D      I  K+         +  
Sbjct: 686 YDVFIGSKNGLAIRMNLNELRSQGRTASGVTAMKLEDDDSIAGIT-KVEPNTNLFCISEN 744

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +  +        RGG G    K   ++G+ + 
Sbjct: 745 GFGKRTDFEEFSTKGRGGKGMTYLKIGEKNGRAVG 779



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 76/207 (36%), Gaps = 15/207 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST-D 569
            E   ++++  G+++ ++           + A+  ++GD L   + A+  +  + + + +
Sbjct: 636 DESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVI-ANPNNYDVFIGSKN 694

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G A  +    L S       +  +  L  +  I      +    L  +S  G     +  
Sbjct: 695 GLAIRMNLNELRSQGRTASGVTAM-KLEDDDSIAGITKVEPNTNLFCISENGFGKRTDFE 753

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R GK    +   EK    V ++     D + V+ ++   +   +  I  + R  
Sbjct: 754 EFSTKGRGGKGMTYLKIGEKNGRAVGISSVKEEDELLVITQSGMAIRVEVKTISMVGRSA 813

Query: 686 -GVRLQSYKDGG-ISDVICFKICEGLT 710
            GV++ + KD   + D    +  +  +
Sbjct: 814 MGVKVVNTKDEDFVKDFAVVRESDSDS 840



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 12/190 (6%)

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
           K+I        ++        R     +            + S  G         +RS  
Sbjct: 650 KKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQG 709

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             +  ++A+  ++ DS+           +  +S +G           +    G+ +  L 
Sbjct: 710 RTASGVTAMKLEDDDSIAGITKVEPNTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYLK 769

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEE--KM 650
               N   V         +LLV++  G A  VE   I    R   G   +    E+  K 
Sbjct: 770 IGEKNGRAVGISSVKEEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKD 829

Query: 651 KLVVKVTGDH 660
             VV+ +   
Sbjct: 830 FAVVRESDSD 839


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 405/757 (53%), Gaps = 28/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L     +KK
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA  VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  AA RYTEA
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+GMAT++P H
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +  ID+ +  I+ L+ Y+ GPDFPT GI +  +E I E+Y  G+G  ++RA
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGI-IYGKEGIKEAYTTGKGRIKLRA 263

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           R  VEE  R    IVV E+PY V K+ L EKIA+L+   +I  + DIRDES+      ++
Sbjct: 264 RLEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLI 323

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +   +++  ++  +D+ET F +    L  G  P+V+ L  ++K ++ HR EV+ 
Sbjct: 324 IELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGE-PKVLNLKELIKYFVDHRVEVIT 382

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           +R+ + +     +  IL+GLLIA  NI+E+I IIR     D  +  +++RF L+E Q  A
Sbjct: 383 KRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQA 442

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++++ E +    
Sbjct: 443 ILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKY---- 498

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
             G  R +       D    ++ +I  E + V I+ +G+I+ + + S          +  
Sbjct: 499 --GDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGVQG 556

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
              +    ++    A T D + + +  GKA+ +    +   S    G++I+ +++L   +
Sbjct: 557 GKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAPEE 616

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I + F    +D    +++V+  G    +E   +    ++G   L + + +++  V  V 
Sbjct: 617 KITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSPVQ 676

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           TGD   +       L  + ++I +M R   GV+  S  D  I  V    I +G + I   
Sbjct: 677 TGDDFIMTTAAGLALRITEEKIRKMGRAAAGVKGISLDDDDI-CVSGNAIHKGESLIVIT 735

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  +     +  RGG G +  K   ++G  +S
Sbjct: 736 ENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNVVS 772



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++++  G I+ +       +    + AL  +  D L       T D  ++ +  G A  
Sbjct: 633 IIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALR 692

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +    +         ++  I L+ +   V+         L+V++  G    +   +    
Sbjct: 693 ITEEKIRKMGRAAAGVKG-ISLDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVK 751

Query: 635 TRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + +  + K   VV V      D + VV  +   +    D IPE+ R  KGV++
Sbjct: 752 GRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKI 811

Query: 690 QSYKDGGISDVICFKICEG 708
            +  DG     +     + 
Sbjct: 812 VNISDGARVSDLAVVPADN 830


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 247/841 (29%), Positives = 380/841 (45%), Gaps = 113/841 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V  +++   L   YL YA+S I  RA+PD RDG KPVHRR++ +M E G     ++ KS
Sbjct: 20  DVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERSYVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y +LVR+ Q F     LI GQGNFG++DGD  AA RYTE R
Sbjct: 80  ARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 139

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M   A  +L  +D+D VDF+D Y+ ++ EPVV PS+ PNLL NG  GIAVGMAT+IP HN
Sbjct: 140 MAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 199

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A L +ID P+++ ++LL+ + GPDFPTGG I+  R    ++   GRG   +R  
Sbjct: 200 LGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEII-GRAGPRQALLTGRGSVIMRGL 258

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VEE+  G   I++T IPYQV KS L+E IAE++  KRI  + DIRDES  D   ++  
Sbjct: 259 ATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEGVSDIRDESNRDGMRIVVE 318

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++  ++  + +++ F +NM  L+    P  M L  ++  ++  R EV+ RR
Sbjct: 319 LKRDASGEVILNQLYRFTALQSSFGVNMLALN-RGRPSQMGLRELIDIFVKFREEVVVRR 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F +     R  +L GL IA  NIDE I IIR+   P                      
Sbjct: 378 TKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKAWPAGDMLPLVE 437

Query: 419 ------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT+ Q  AIL L L  L  L   +I +E  +L    +    LL+
Sbjct: 438 LIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAASLAEAIKGFLDLLS 497

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   +  E+ EV+E F+       RR   C++   D     + +I +E + + ++ 
Sbjct: 498 DRANIMAVVREELVEVREKFAIP-----RR---CQIVDGDADVEDEDLIVREDMVITVTL 549

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++                 S +  K  D++     A T   +L  ++ GK Y +   
Sbjct: 550 GGYVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSGGKVYKMKVW 609

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G+A   L+ +   + I +               ++  +  G+    + S+
Sbjct: 610 RLPQGVANSRGKAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSGSVRRNKLSD 669

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SR-GKGV 687
            +   R GK  +K+   + +  V     G  + +     + + FS D++    SR   GV
Sbjct: 670 FVDVRRNGKIAMKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRVFASRDSTGV 729

Query: 688 RLQSY---------------------------------------------------KDGG 696
           R                                                       +D G
Sbjct: 730 RGVRLAPGDSVISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAAVEDSEEDVG 789

Query: 697 ISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +   +I E        +  +   + +  +        RGG G        R GK + 
Sbjct: 790 EASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDLSKRGGKLVG 849

Query: 753 S 753
           S
Sbjct: 850 S 850



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 22/200 (11%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-AI 590
                S  +  +    GDS+         D     +   +A  L        R  GE   
Sbjct: 721 FASRDSTGVRGVRLAPGDSVISMSVLRNVD----ATPAERAAYLK-HQRAMARAMGEEGD 775

Query: 591 QLLIDLNHNQDIVT---------AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           +    +  +++ V          A +  +   LL VSS+G        +     R G+  
Sbjct: 776 EAPAAVEDSEEDVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGL 835

Query: 642 LKVSS---EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                     K+     V   D + +V +  +L+   + QI   +R  +GV +  ++   
Sbjct: 836 TAQDLSKRGGKLVGSFPVDESDQILLVTDAGQLIRVPVSQIRVAARNTQGVTI--FRTAA 893

Query: 697 ISDVICFKICEGLTWIDSAG 716
              V+  +        DS G
Sbjct: 894 DEHVVSVERLAETGGDDSTG 913


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/750 (33%), Positives = 413/750 (55%), Gaps = 32/750 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++  ++   +++ Y+ YA+S I  RA+PD+RDG KPVHRRI++ M E+GL     +KKS
Sbjct: 2   KIQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGDQ++Y++L R+AQ F  RY L+ GQGNFG+IDGDS AA RYTEAR
Sbjct: 62  ARIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEAR 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++AE +L+ +D + VDF   ++    EPVV P++ PNLL NG+SGIAVGMAT++P HN
Sbjct: 122 LAKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + LID+P+  +++LLE++ GPDFPTGG I+   E +V++YR G+G  +VRA+
Sbjct: 182 LSEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTII-GYEGLVDAYRTGKGKIKVRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + V+E       I++ EIPY+V KS L++KIA L+   ++  + D++DES  +   ++  
Sbjct: 241 YEVKED-----RIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIK 295

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P++++  +   +D+E  + +   VL  G VP+++ L  ++KE++ HR EVL R+
Sbjct: 296 VKRDMNPEIVVNQLLEHTDLEVTYGIINLVLVDG-VPRILNLKELMKEYIRHRMEVLVRK 354

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF--SLTENQVDAILN 433
            +++++    R  I++GL+ A   IDE+IA I+     K   ++      +E Q  AIL+
Sbjct: 355 LNYQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLVSLGFSEVQAKAILD 414

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  +E   +  E   L  + + ++SLL S ++++  I  E+ E+K ++       
Sbjct: 415 MRLQKLTSMEIDALIEENRKLEEDIKNMESLLASEEKRYGVIKEELFEIKNLYGDK---- 470

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------- 546
            RRT   + +   +    + +I  E   ++++ +G+IR LK           K       
Sbjct: 471 -RRTDIYKGAVERRDI--EDLIPNEEAVIILTEKGYIRRLKVDEYRAQGRGGKGVMINYG 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           EGD  +    A+  D ++  + +G+ Y L A  +  G  R  G AI  +I    +  I  
Sbjct: 528 EGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRM 587

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663
             + D +  L  ++  G        E       G   +    ++++  V     G+ + +
Sbjct: 588 LSLNDFSGYLFFITRNGIVKRTSLEEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFL 647

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNR 721
             +  K + FS D +  M R  +GV     +DG   +VI   +  EG          Y +
Sbjct: 648 FTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDG--DEVISSAVESEGPYVFAVLSSGYGK 705

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                     +RGG+G        R+   +
Sbjct: 706 RTPIGEYRRIRRGGMGVRNISI--RNANVV 733



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/456 (14%), Positives = 139/456 (30%), Gaps = 32/456 (7%)

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LIIA-KRIPLLEDIRDESAEDVRIVLFP 315
           ++E  R    ++V ++ YQ++K++  + I E L+ A   I  +      S +     +  
Sbjct: 340 MKEYIRHRMEVLVRKLNYQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINL 399

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +           + M     T   ++  +    ++ + +     L      R  V  + 
Sbjct: 400 VSLGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASEEKRYGV-IKE 458

Query: 376 SSFRMQAI---DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             F ++ +    RR +I KG +      D I           P   +   LTE      L
Sbjct: 459 ELFEIKNLYGDKRRTDIYKGAVERRDIEDLI-----------PNEEAVIILTEKGYIRRL 507

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +     +      +          ++   + L+                 + +      
Sbjct: 508 KVDEYRAQGRGGKGVMINYGEGDLPRDITTANLHDY--LMFFTKNGRVYWLKAYEVPEGT 565

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPI---TVVISNRGWIRSL------KSHSVDLSAL 543
            R R            +    M+           I+  G ++           S  + A+
Sbjct: 566 RRSRGRAIINIIPKLGSDVIRMLSLNDFSGYLFFITRNGIVKRTSLEEFSNPRSTGIRAI 625

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
            F E D L      H  + I L +  GKA      ++         +   I L    +++
Sbjct: 626 IFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIG-IKLQDGDEVI 684

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHV 661
           ++ V      +  V S G        E     R G     + + +   +K ++    D  
Sbjct: 685 SSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNANVVKSLLTTENDEA 744

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            ++ +N   +   +  +  M R  +GV+L    DG 
Sbjct: 745 LLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGD 780



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 62/179 (34%), Gaps = 14/179 (7%)

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKE--PITVVISNRGW--------IRSLKSHSVD 539
            +    R+T       D+      +          + +  G         +R +   +  
Sbjct: 612 EEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARG 671

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           +  +  ++GD +  +        +  + + G     P G     R  G  ++ +     N
Sbjct: 672 VIGIKLQDGDEVISSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISI--RN 729

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKV 656
            ++V + +     + L+++  G +  ++  +  ++    +G   +K+   +++  V K+
Sbjct: 730 ANVVKSLLTTENDEALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 265/811 (32%), Positives = 420/811 (51%), Gaps = 75/811 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +   + +++K V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENILNLNQDIKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGDS
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSIDGDS 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++   EP V PS+ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P H++ E+ +  L L+DN   S+E++++YI GPDFPTGGII   ++ I+E+YR 
Sbjct: 181 GMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIF-GKKGIMEAYRT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  +VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES
Sbjct: 240 GRGRVKVRAKTHIEK-KPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R    D+++ ++F  + ME+ F + M  +     P++  L  +LK +L
Sbjct: 299 DREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKE-PKIFTLIELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR+ V+ R++ F ++    R  IL+GL IA  NIDE+I +IR        +  ++ +F 
Sbjct: 358 NHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEKFG 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +AIL++RL  L  LE  ++ +EL  LLAE  ++D +L S     N I  E+ E+
Sbjct: 418 LSELQSNAILDMRLSKLTGLEREKLDNELKELLAEISRLDEILKSETLLENLIKDELLEI 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           K  F              E+         + +I  E + V I++RG+I+          K
Sbjct: 478 KSKFKVP--------RLTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQK 529

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                  A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  
Sbjct: 530 RGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVN 589

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L   + I        +     L   +  G       SE       G   + +   ++
Sbjct: 590 LVQLQPEEKIKAIIPTTDFAQNKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAISLDENDE 649

Query: 650 MKLVVKVT-GDH---------------------------------------------VAV 663
           +   + V  GD                                              + +
Sbjct: 650 LVTALIVEHGDEGVQPENLIDELGVETEINEIETIESEIDEQSDENIDSIDDTDEKMLFI 709

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
           V +    L F + ++ +M R  +GV    +K+ G   V    I       +  + +   +
Sbjct: 710 VTKKGMCLKFKLGKVRQMGRTARGVTGIKFKEKGDEVVGAAVIESNAQEILSISQKGIGK 769

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   L  RGG G +  K   R+G+ + 
Sbjct: 770 RTTAEEYRLTNRGGKGVICMKLTTRTGELIG 800



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 560 TDRILLL--STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLV 616
           TD  +L   +  G       G +         +  +       ++V  A +  +  ++L 
Sbjct: 702 TDEKMLFIVTKKGMCLKFKLGKVRQMGRTARGVTGIKFKEKGDEVVGAAVIESNAQEILS 761

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVTGD-HVAVVGENRKLLI 672
           +S KG        E     R GK  + +       ++  VV V  +  +  +  + K++ 
Sbjct: 762 ISQKGIGKRTTAEEYRLTNRGGKGVICMKLTTRTGELIGVVMVDDEMDLMALTSSGKMIR 821

Query: 673 FSIDQIPEMSRGK 685
             +  I +  R  
Sbjct: 822 VDMQSIRKAGRNT 834



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 30/239 (12%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSL 551
              +     KA +      +       +  G ++           S+ + A+   E D L
Sbjct: 591 VQLQPEEKIKAIIPTTDFAQNKSLAFFTKNGIVKRTNLSEFKNIRSIGVRAISLDENDEL 650

Query: 552 KIALHAHTT-----DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
             AL              L+   G    +            E I+  ID   +++I +  
Sbjct: 651 VTALIVE-HGDEGVQPENLIDELGVETEINEI---------ETIESEIDEQSDENIDSID 700

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSS-EEKMKL--VVKVTGDHV 661
             D    L +V+ KG     +  ++  +  T +G T +K     +++    V++     +
Sbjct: 701 DTDE-KMLFIVTKKGMCLKFKLGKVRQMGRTARGVTGIKFKEKGDEVVGAAVIESNAQEI 759

Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY--KDGGISDVICFKICEGLTWIDSAGR 717
             + +       + ++    +RG KGV       + G +  V+       L  + S+G+
Sbjct: 760 LSISQKGIGKRTTAEEYRLTNRGGKGVICMKLTTRTGELIGVVMVDDEMDLMALTSSGK 818


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/772 (32%), Positives = 412/772 (53%), Gaps = 35/772 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  +N      E ++ V +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++A
Sbjct: 1   MSSD--ANDANAPAERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+    A +KS+ IVG+ +G  HPHG  ++YD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 59  MHEMGVSSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM  +AE +L+ +++D VDF   Y++   EP V PSK PNLL NG+
Sbjct: 119 MDGDPAAAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + L+ NP+ ++E L+E+I GPDFPTGG  +  R++I 
Sbjct: 179 SGIAVGMSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGG-NIVGRDAIY 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GRG  RVRA +   EV      IV++E+PYQ  K+R++E+IA+ +   +I  + D
Sbjct: 238 SAYATGRGRLRVRAEY---EVDPEEGRIVISELPYQENKARVVERIADDVNEGKIEGISD 294

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  +   ++    R  + D++   + +   +E+ F +    L  G+ P+V+ L   
Sbjct: 295 LRDESDRNGVRIVVELKRGANIDVVENRL-LDHHLESTFGVINLALVDGQ-PKVLSLKES 352

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVM 417
           L+ ++ HRREV+ RRS + +   + R  IL+G L A  N+++++ +IRN    D  +  +
Sbjct: 353 LQHYIDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGL 412

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  +E Q   I+ ++L SL  +E  +I+ E +++    + ++S+LNS ++  + IA 
Sbjct: 413 QESFDFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSREKLDSVIAD 472

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++EVK+ +        RRT+  E          + +I +E   VVI+   +I+ +   +
Sbjct: 473 ELQEVKDDYDD-----DRRTSIIEDEGQ---VTHEDLIPEEDCVVVITEDDYIKRMPVEN 524

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            D              KE D +     A++ D +L  +  G+ Y L    +   S    G
Sbjct: 525 FDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 584

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   LIDL+  +++      D       + +V+  G       SE       G    K+
Sbjct: 585 KSAINLIDLDDGEELTAVVSTDEFGDDECITMVTRNGYVKRTCCSEFENILSTGIIAAKL 644

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              +++  V    G   + +  E    + FS  ++ EM R  +GV     +D   ++ ++
Sbjct: 645 EDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEMGRSARGVNGIKLQDDDKVAAMV 704

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  + +      + +           R G G +  K   R+G+  ++
Sbjct: 705 ATDDDDPRSLLTVTEHGFGKRTKLDEYRTQSRYGKGLIDIKTDDRNGRVSTA 756



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
           A +       +    +++  G+++              + A   ++ D L        T 
Sbjct: 601 AVVSTDEFGDDECITMVTRNGYVKRTCCSEFENILSTGIIAAKLEDSDELIDVDVTDGTG 660

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSS 619
            +++ +  G         +         +   I L  +  +      D      LL V+ 
Sbjct: 661 DLVIATEAGMTIRFSESEVSEMGRSARGV-NGIKLQDDDKVAAMVATDDDDPRSLLTVTE 719

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV----VKVTGDHVAVVGENRKLLIFSI 675
            G     +  E    +R GK  + + ++++   V         DH+ ++ E  +++    
Sbjct: 720 HGFGKRTKLDEYRTQSRYGKGLIDIKTDDRNGRVSTAKAVTDEDHLVIMSEQGQIMRIRA 779

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             + ++ R  KGV +   ++      +     E
Sbjct: 780 GDVSQVGRNTKGVTIMGLEEDDRVASVTVVPAE 812


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 269/738 (36%), Positives = 425/738 (57%), Gaps = 24/738 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   E+ YL Y++S I +RA+P + DG KPV RRII+AMSE+GL   A  KKSAR VG+
Sbjct: 16  LRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVGD 75

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA 140
           V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+  D  S AA RYTE+R+T+ A
Sbjct: 76  VLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQDDPKSFAAMRYTESRLTRYA 135

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  + +  VD+   ++    EP   P++ PN+L NG SGIAVGMAT IPSHN+ E+ 
Sbjct: 136 HALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEVV 195

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A + L+D P  ++  L   I GPDFP+   I+  R  +   Y+ G G  R RA +  E 
Sbjct: 196 NACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREE- 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318
                  I++T +PYQV  +++IE+IAE I  K++PL++D+RDES  +   RIV+ P++ 
Sbjct: 255 ----KNQIIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRSS 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +D D LM+ +F  +D+E  + +N+N++ +   PQV  L  IL+EWL +R+  + +R  F
Sbjct: 311 RVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLEF 370

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
            +  I +R+ +L+G LI Y ++DE+I +IR  D PK  ++  + L++ Q DAIL +RLR 
Sbjct: 371 HLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKTQLMRHYKLSDIQADAILEIRLRQ 430

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KLEE ++++E  +L+AE++ +  +L+S  Q    I  E++E  + +        RR+ 
Sbjct: 431 LAKLEEIKLRAEQKSLIAERDNLQKILSSKTQLKRLIRSELQEDAKRYGD-----LRRSP 485

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
           F E     +A  +  +I  EP+TV++S RGWIR+ K H  D+S L FK GD+LK  +   
Sbjct: 486 FVERRA-AQALQKTEIISSEPMTVILSTRGWIRAAKGHDFDVSGLSFKAGDALKSTVLGR 544

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
           +   ++L+ + G++Y+ P  +L S R  GE +    +        +    +    ++V S
Sbjct: 545 SNQLLVLMDSTGRSYSTPLHSLPSARSSGEPLTSRFNPPPGVQFESMISGNPDQAIVVSS 604

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSI 675
             G  FI + SE+ +  R GK+ LK+S+      +  +  +   +VA+      LLI S 
Sbjct: 605 DAGYGFITQLSEMYSKNRNGKSLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIISA 664

Query: 676 DQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            ++P++SRGKG ++          ++  I+ +           + S  +       D + 
Sbjct: 665 YELPQLSRGKGNKMMQISSKKREQREEFIAKITSLPSKNSSLLLTSGKKQVVWKARDWIH 724

Query: 729 WLGKRGGVGSLVPKGFPR 746
           + GKRG  G  +P+G  +
Sbjct: 725 YRGKRGQRGRKLPRGLQK 742


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 240/728 (32%), Positives = 383/728 (52%), Gaps = 60/728 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RAIPDLRDG KP HRRI++AM E G      ++KSAR VG+V+GK
Sbjct: 1   MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGDSAAA RYTE RM + A  +L 
Sbjct: 61  YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D VDF+D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LA
Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LI+NP++S E L++Y+ GPDFPTG  I+  R    ++Y  GRG   +RA+  +EE+ +  
Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIM-GRGGARKAYLEGRGSVIIRAKTRIEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
           + I++ EIPYQV K+ +IEK+A+L+  K++  +  I DES      V+    R    D++
Sbjct: 240 FAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L+ G  P+ + L   L  ++A R EV+ RR+++ ++    
Sbjct: 300 LNQLYRFTPLQTSFGCNMLALN-GGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARE 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------------- 417
           R  IL GL +A  N+DE++A IR+   P                                
Sbjct: 359 RSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVN 418

Query: 418 -VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               ++L+E Q  AIL+LRL+ L  +   ++  EL  L  +     ++L S ++    IA
Sbjct: 419 DDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIA 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+REV+   +       RRT   E+         + +IE+E + V I++ G+I+     
Sbjct: 479 TELREVRAAHAVP-----RRT---EIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLA 530

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +     L+++  KE D +     A+T  ++L  +TDG  Y+L    L        
Sbjct: 531 EFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSK 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G+AI  ++ +     + +    D         ++   +S G+      S+     + GK 
Sbjct: 591 GKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKR 650

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKDGGI 697
            +++     +         D + +V  + + + F + ++     R   GVR     +G  
Sbjct: 651 AMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEG-- 708

Query: 698 SDVICFKI 705
             V+   +
Sbjct: 709 DKVVSMSV 716



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRK 669
           +L +++KG   I          R G+             +     V   D V +     +
Sbjct: 778 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRGGALVASFPVEPTDQVMLATSTGQ 837

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            +   +  I   SR   GV++  +  G   +V+   
Sbjct: 838 SIRCPVAGISFRSRAAGGVKV--FNTGAEEEVVSVA 871


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 399/767 (52%), Gaps = 29/767 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   +T     +  +S+   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI++AM E G
Sbjct: 1   MEEISTPEGGVLVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F    +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRFSGPTRKCAKIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ V F   +++ D EP V P +FP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM T++P HN++EI  A  A I+NP +SI++L + I GPDFPTGGII   +  I +SY  
Sbjct: 181 GMTTNMPPHNLREIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIF-GKNGIRQSYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VRAR+ +E   +G   I+ TE+PYQV  + L+ +I EL  AK I  + ++ DE 
Sbjct: 240 GRGKIVVRARFTIETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    +     +++  +F  + +++ F +    L     P+++ L  +++ +
Sbjct: 300 SDRTGLRIVVELKKGTPAQVVLNHLFAKTPLQSSFNVINLALV-EGRPRMLTLKDLVRYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR +V+ RR+ F ++    R+ +++ L+ A   ID+II +IR+       K  +  +F
Sbjct: 359 VEHRVDVVTRRAHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
                Q  AI++++++ L  LE   +++EL +L      ++ LL S ++    +  E R+
Sbjct: 419 DFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRD 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SL 533
           + ++F        RRT    VS   +    +  I+KE + ++IS+ G+I+        + 
Sbjct: 479 IADMFGD-----DRRTDI--VSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGH-GEAIQ 591
                  S+ +    D +     A T D ++ +++ G+AY L    +  SGR + G  I+
Sbjct: 532 NRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+ +  +++I        + +   + + +++G    V     +    +G   LK+S  +
Sbjct: 592 SLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGD 651

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
            +   V V   D V ++    K L  S  ++ EM R   GV         +      ++ 
Sbjct: 652 TLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLV-AGVLRVS 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    +      Y +  +     +  RG  G  +     R G  + +
Sbjct: 711 EQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGA 757



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 18/232 (7%)

Query: 484 EIFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           +++         R +  +            A +       +    + + RG ++ + + +
Sbjct: 574 KVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDN 633

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   + AL    GD+L  A+     D ++L++  GKA  +    +     +   + 
Sbjct: 634 FVNAKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVI 693

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648
             I L     +          K+L+++  G    V  SE   + R     K + +   + 
Sbjct: 694 G-IKLTSEDLVAGVLRVSEQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKG 752

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
            +   + V   D    +    K +   +  I  + RG  GVR+   +   + 
Sbjct: 753 AIIGALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLV 804


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 221/780 (28%), Positives = 386/780 (49%), Gaps = 51/780 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +++K +++   L + +L Y++S I  RA+PD+RDG KP  RR+++AM ++G+  G A
Sbjct: 1   MSNDSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+IVGE +G  HPHGDQS+Y +LV + QP+  R  L+ GQGNFG+++GD+AA+ RY
Sbjct: 61  HVKCAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  +   +++ +++  VDF+  Y+    EP V PS FPN L NG +GIAVGMAT++
Sbjct: 121 TEARLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E+ +   A ID P+I++ +L++YI GPDFP    I   R  I E +R GRG  R
Sbjct: 181 APHNLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIR-GIEEYFRTGRGSMR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +EE   G   IV+ E+PY V ++ L E+IAEL+  K +  +  +RD S E+ RI
Sbjct: 240 LRGKVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEETRI 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R   P +++  +F L+ +ET F +NM  +     P+ + L   +  ++ HRR+V
Sbjct: 300 EIELK-RDARPQVVVAQLFKLTALETSFSVNMLAI-HQNRPKQLSLKEAIDAYIEHRRDV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F +   + R E+L+  L+A  ++D+ I IIR+    D+ + +   R+  +E QV
Sbjct: 358 IIRRTRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDRYVFSERQV 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL LRL  L  +E+ ++K E D +L E + +  +L    +    I  E+R +++ ++ 
Sbjct: 418 NAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILAREVRVLTIIKDELRVIRDKYAT 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                      C +         + +I  + + V +S+RG+++                L
Sbjct: 478 PRK--------CPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTPATEYRLQGRGGKGL 529

Query: 541 SALHFKE------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
             +  K        D ++        D +L  +  G+ Y      L   S    G +I+ 
Sbjct: 530 KGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFELPEGSRTSTGRSIKN 589

Query: 593 LIDLNHNQDIVTAF--------------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +++L  ++ I                    +    +   +  G       ++     + G
Sbjct: 590 VLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKVKKTALNDFRNYRKDG 649

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKD 694
              + +     +  V   +G D + +V  +   + F+    QI    R   GV     + 
Sbjct: 650 IIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRPQGRATAGVTGIRLRK 709

Query: 695 GGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                V+   I  E    + ++     +          +RGG+G        ++GK +++
Sbjct: 710 DDY--VVGMAIVSEETMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVTDKTGKVVNA 767



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT 559
           D         E        +  G ++    +         + A++  EG+ L        
Sbjct: 610 DDNGNDITFREDAGFVFFATRNGKVKKTALNDFRNYRKDGIIAINLDEGNDLIGVSLTSG 669

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVV 617
            D I+L++ DG +     G     R  G A   +  I L  +  +V   +      LLV 
Sbjct: 670 EDEIVLVTRDGMSIKFTEGR-PQIRPQGRATAGVTGIRLRKDDYVVGMAIVSEETMLLVA 728

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIF 673
           S  G       S      R G     ++  +K    +  V     D + ++    + +  
Sbjct: 729 SENGLGKRTAFSSYRPLRRGGLGVKTLNVTDKTGKVVNAVSVTEQDELMLMTSTGQSIRI 788

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            +++I E  R  +GV+L + K+G     I   I +G
Sbjct: 789 RVNEIRETGRVAQGVKLLTLKEGEKLQDISLVIPDG 824


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 246/754 (32%), Positives = 388/754 (51%), Gaps = 62/754 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL YA+S I  RAIPDLRDG KPVHRRI++AM E+G      ++KS+R 
Sbjct: 25  SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           V + +G+ HPHGD ++YD+L R+ Q F    PL+ GQGNFG++DGD  AA+RYTE RM +
Sbjct: 85  VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A+ +L+ +D+D VDF+D Y+ +  EP+V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+I++P+IS E+L+E I GPDFPTGG+I+  R    ++Y  GRG   +RA+  V
Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVILRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IVV E+P+QV K+ +IEKIA+L+  K++  +  I+DES      V+    R
Sbjct: 264 EEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + ++T F  NM  L+ G  P+ + L   L+ ++  R EV+ RR++F
Sbjct: 324 DATPEVVLNQLFRFTQLQTSFGCNMLALN-GGKPEQLTLRDFLRHFITFREEVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  IL GL +A  N+DE++A IR                              
Sbjct: 383 LLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLVD 442

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I+ E+  VK+ F+       RR+   E S        + +IE+E + V I+  GW
Sbjct: 503 RIMAIISDELTAVKDEFAVP-----RRSEIVEWSG---DMDDEDLIEREDMVVTITQSGW 554

Query: 530 --------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
                    R  K     LS +  K+ D +     A+T  ++L  +TDG AY L    L 
Sbjct: 555 AKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +SKG+      S+   
Sbjct: 615 LGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK---MKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SR-GKGV 687
             R GK  +K   E++   +         D V +V    + + F +  +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGRAIRFPVPDVRVFNSRNSTGV 734

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           R      G   +V+   +            +Y +
Sbjct: 735 RGIRL-LGKDDEVVSMSVIRHFDATSEERTAYLK 767



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 78/258 (30%), Gaps = 75/258 (29%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT---TDRILLLSTDGK 571
            V  +++G +R  +             A+ F+  D     ++A      D ++L++  G+
Sbjct: 655 IVFATSKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGR 714

Query: 572 AYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCK-------------- 613
           A   P  ++      +   ++ +  L  + ++V+  V   +D+T +              
Sbjct: 715 AIRFPVPDVRVFNSRNSTGVRGIRLLGKDDEVVSMSVIRHFDATSEERTAYLKMRRQMAG 774

Query: 614 --------------------------------LLVVSSKGNAFIVEESEIIANTRKGK-- 639
                                           +L ++ KG   +    +     R G+  
Sbjct: 775 ADETDDSDDEDEAVEGAITQERFEEMQAAEELILTITEKGLGKLSSSHDYPVRGRGGQGV 834

Query: 640 -TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697
             F K      +     V   D V +     + +   ++ I   SRG G           
Sbjct: 835 TAFTKAMPGGDLVACFPVGMEDQVMLATSKGQSIRCPVNGISFRSRGAG----------- 883

Query: 698 SDVICFKICEGLTWIDSA 715
             V  F   +G + +  A
Sbjct: 884 -GVKVFNTGKGESVVSVA 900


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 246/753 (32%), Positives = 402/753 (53%), Gaps = 34/753 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   ++N+  V ++  +++ YL Y++S I  RAIPD RDG KPVHRRI++AM E+ L+  
Sbjct: 3   DLFSDKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHN 62

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSAR+VG+VIGK HPHGD +VYD+LVR++Q F  RYPLI GQGNFG++DGDS AA 
Sbjct: 63  KPYKKSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAM 122

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE R++++AE +L+ +D+++VDF   Y++   EP V P+  PNLL NGT GIAVG AT
Sbjct: 123 RYTEVRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFAT 182

Query: 190 SIPSHNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            IP +N+ EI +A    L  + EIS +++L YI GPDFPTGGI  + +  I E+Y+ G G
Sbjct: 183 KIPPNNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKS-IKEAYKKGIG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+   EE  +    +VV EIPYQV K+ L++ IA+L+  K++  + D+RDES ++
Sbjct: 242 KITLRAKVK-EEKIKNRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKE 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +   P +++  +F  ++++T F +NM  L  G  P+++ +   +  ++ HR
Sbjct: 301 GVRIVIEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALV-GNTPRLLNIKDAIGVFVEHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
            +V+ RR+SF +     R  IL+GLLI   NIDE++AII++     + +  +  RF L++
Sbjct: 360 IDVVKRRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKERFKLSD 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL+++L  L  LE+ ++  E + +L + E  +S+L         I  E+  VK+ 
Sbjct: 420 RQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQT 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHS 537
           ++        R T    S  D     + +I+ E + +  S +G+++        +     
Sbjct: 480 YADE------RKTQILDSIVDIGI--EDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A  F + D +      ++ + +L  +  G+ Y++ A N+   S    G  I  +++
Sbjct: 532 KGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILN 591

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L   + + T         L   ++ G                GK  ++++ ++ +  V  
Sbjct: 592 LQPQEFVKTIVPISEADSLFFATAAGTVKRSSFRHFENIPSNGKIAIRLNEQDSLVSVFS 651

Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG----L 709
           V  GD V +       + F  D + +M R   GVR  +  +G  S V  F   +     L
Sbjct: 652 VAEGDEVIITTRRGMCVRFDSDSVRDMGRAAAGVRGINLSEGD-SVVSAFNFNQDKHTKL 710

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +   G       +D+      RG  G    K
Sbjct: 711 IVVSQTGLGKLLRVSDI--RKVNRGAKGVRCIK 741



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDL 596
              A+   E DSL         D +++ +  G      + ++   R  G A   +  I+L
Sbjct: 634 GKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSV---RDMGRAAAGVRGINL 690

Query: 597 NHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKL 652
           +    +V+AF ++     KL+VVS  G   ++  S+I    R  KG   +K+   + +  
Sbjct: 691 SEGDSVVSAFNFNQDKHTKLIVVSQTGLGKLLRVSDIRKVNRGAKGVRCIKLKENDSVAG 750

Query: 653 VVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
            + +     V VV +N K++    D I   SR  +GV+L +  +      I     E 
Sbjct: 751 SLSLKDTGDVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSIVVAGSED 808



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 516 EKEPITVVISNRG--------WIRSLKSHSVDLSALHFKEGDSLKIALHAHT--TDRILL 565
            +    ++ + RG         +R +   +  +  ++  EGDS+  A + +     ++++
Sbjct: 653 AEGDEVIITTRRGMCVRFDSDSVRDMGRAAAGVRGINLSEGDSVVSAFNFNQDKHTKLIV 712

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           +S  G    L   ++       + ++  I L  N  +  +     T  ++VV+  G    
Sbjct: 713 VSQTGLGKLLRVSDIRKVNRGAKGVRC-IKLKENDSVAGSLSLKDTGDVIVVTKNGKMIK 771

Query: 626 VEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           ++     + +   +G   + +   + +  +V    + 
Sbjct: 772 MDADSINVFSRAARGVKLINLDEADSVVSIVVAGSED 808



 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------IRSLKSHSVDLSALHFK 546
           G R     E      A         + I V  +  G       IR +   +  +  +  K
Sbjct: 684 GVRGINLSEGDSVVSAFNFNQDKHTKLIVVSQTGLGKLLRVSDIRKVNRGAKGVRCIKLK 743

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           E DS+  +L    T  +++++ +GK   + A ++         ++ LI+L+    +V+  
Sbjct: 744 ENDSVAGSLSLKDTGDVIVVTKNGKMIKMDADSINVFSRAARGVK-LINLDEADSVVSIV 802

Query: 607 VYDSTCKL 614
           V  S  + 
Sbjct: 803 VAGSEDEY 810


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/798 (31%), Positives = 390/798 (48%), Gaps = 80/798 (10%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E  +    LR  + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TTSESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDR 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMR 121

Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  +  + +L+ +D + VDF D ++    EP+V PS+ P L  NG+SGIAVGMAT
Sbjct: 122 YTECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI N EI+  +L+++I GPDFPTG  I+  +  I ++Y LGRG 
Sbjct: 182 NIPPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQIL-GKSGIRDAYTLGRGS 240

Query: 250 FRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E + +        I+VTE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES
Sbjct: 241 ITMRGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R   P +++ +++  + ++  F  N+  L     PQ++ L   L+ +L
Sbjct: 301 DRNGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSE-PQLLTLKKYLEVFL 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R E + RR+ + ++  + R  +L+GLLIA  N+DEII +IRN       K  ++  + 
Sbjct: 360 EFRVETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DAIL ++LR L  LE  +I+ E + LL +   +  +L   ++    I  E  E+
Sbjct: 420 LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADLQDILAKRERILEIIETEAIEI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538
           KE  +        R T  E++  +       +I  E   ++++ +G+I+ +  +S     
Sbjct: 480 KERHATP------RRTVIELAEGELDDT--DLIANEKAIILLTEQGYIKRMPVNSFEAQS 531

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 S    KE D ++  L  +  D IL  S  G  Y L A  +   S    G  I  
Sbjct: 532 RATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQ 591

Query: 593 LIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ +  ++    IV    +     L++++  G       S        G   + +   + 
Sbjct: 592 MLPIPRDEKVTSIVAVSEFTDDKYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGEGDS 651

Query: 650 MKLVVKVTGDHVAVVGEN-RKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++ V +   D   ++G +    + F  D  Q+  + R  +GV+      G   ++I   I
Sbjct: 652 LRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGVKSMKLIKG--DELISMDI 709

Query: 706 CE-------------------------------------------GLTWIDSAGRSYNRS 722
                                                        G   +      Y + 
Sbjct: 710 LPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNNIGSWVLVITTNGYGKR 769

Query: 723 ENDLLGWLGKRGGVGSLV 740
                  L  RGG G + 
Sbjct: 770 VPVSQFTLQNRGGKGRIA 787



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 60/263 (22%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
                   + +  +    +   V+++  G+I+           S  L A+   EGDSL+ 
Sbjct: 595 IPRDEKVTSIVAVSEFTDDKYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGEGDSLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQ----DIVTAF 606
              A   D +++ S+ G A      N      GR     ++ +  +  ++    DI+ + 
Sbjct: 655 VRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPLGRNT-RGVKSMKLIKGDELISMDILPSS 713

Query: 607 VYDSTCK-------------------------------------LLVVSSKGNAFIVEES 629
           + ++                                        +LV+++ G    V  S
Sbjct: 714 IVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNNIGSWVLVITTNGYGKRVPVS 773

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV-------TGDHVAVVGENRKLLIFSIDQIPEMS 682
           +     R GK  +    ++K K   +V         + + ++     ++  +ID I   S
Sbjct: 774 QFTLQNRGGKGRIATKFKQKKKKQDQVAALRVVNESEELMIITAKGIIIRQAIDAISIQS 833

Query: 683 R-GKGVRLQSYKD-GGISDVICF 703
           R   GVR+Q   D   I++V   
Sbjct: 834 RSATGVRVQKLDDADAIAEVALV 856


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/738 (33%), Positives = 391/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   L+  YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    +++KSA+ 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD AAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA+ +   + +D VDF D Y+ ++ EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALID+P++SIE+++EYI  PDFPTGGII+  R    ++Y  GRG   VRA+  V
Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIIL-GRTGARKAYIEGRGSVIVRAKTNV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +I+KIAE    K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR++F
Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALN-GGKPEQLTLRAFLAYFIDFREDVVARRTAF 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  +L GL +A  NIDEI+A IR+                             
Sbjct: 383 ELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLID 442

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S +
Sbjct: 443 DPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRE 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV+++F+       RRT   E+         + +IEKE + V +++ G+
Sbjct: 503 RIMQIIRDELTEVRDLFAVP-----RRT---EIVDWSGDMEDEDLIEKEDMVVTVTSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     LS++  KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 555 IKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
             S    G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 LGSRTAKGKAIVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
             R GK  +K   +      +   +    D V +V ++ + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPATDVRVFNSRSSVGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R    +  G   V+   I
Sbjct: 735 RGIKLQ--GDDKVVSMSI 750



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 75/275 (27%), Gaps = 80/275 (29%)

Query: 508 ATLQQAMIEKEPI----TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH- 556
           A +      +E       V  ++ G +R  K             A+ F E D  +  L  
Sbjct: 638 AAIMPVDRPEEEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKF-EDDHAETTLIN 696

Query: 557 ---AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----- 608
              A   D ++L++  G+A   PA ++             I L  +  +V+  +      
Sbjct: 697 ARIASNDDDVMLVTDSGRAIRFPATDVRVFNSRSSVGVRGIKLQGDDKVVSMSIIRHFKA 756

Query: 609 --------------------------------------------DSTCKLLVVSSKGNAF 624
                                                        +   +L ++++G+  
Sbjct: 757 EAEERAAYLKMRRAMAGLADDAETDDEEEAVAGAISQERYAEMSAAENLILTITAQGSGK 816

Query: 625 IVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE 680
           +    +     R G     +        +     V   D + +V    + +   I+ I  
Sbjct: 817 LSSSHDYPVRGRGGMGVAAMDKAMRGGALVTSFPVEISDQIMLVTSTGQSIRVPIEGISF 876

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            SRG G             V  F   +G T +  A
Sbjct: 877 RSRGAG------------GVKVFDTGKGETVVSVA 899


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 247/840 (29%), Positives = 386/840 (45%), Gaps = 99/840 (11%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D I  ++    +    + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++A  
Sbjct: 5   TDIIDPASPAPADGYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASK 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
                 G  + KSA+IVG+V+G  HPHGD ++YD+L RL QP+  R PL+ GQGNFG+ D
Sbjct: 65  LGNFVAGRPYVKSAKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNFGSPD 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  A+ RYTEAR+ +V++ +L  +D+D VDF D Y+    EP V P++FPNLL NG  G
Sbjct: 125 PDPPASMRYTEARLARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVNGAGG 184

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++P HN+ E+ +  LA ++NP I+ E+L+EYI GPDFPT  +I+        +
Sbjct: 185 IAVGMATNVPPHNLGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLIL-GTSGAKAA 243

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R R  +E +      IV T IPYQV ++ L+EKIAE    KRI  + DIR
Sbjct: 244 YTTGRGSILMRCRHEIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGISDIR 303

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   ++    R    ++++  I+  +  ++ FP NM  +  GR   +M L   ++
Sbjct: 304 DESNRDGTRIVIDLKRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLM-LRDFIQ 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418
            +++ R EV+ RR+ F +     R  IL GL++A  N+DE++AIIR    P         
Sbjct: 363 AFISFREEVITRRTKFELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERLLT 422

Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+  QV AIL+LRL  L  L   +I  EL 
Sbjct: 423 KEWPIGDIAQYIRLVEAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDELK 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + E+  ++L    + +  +  E+ E++  ++             E++ A      +
Sbjct: 483 ELAEKIEEFLAILADRVKLYEVMREELEEIRATYATP--------RISEIAPAWDGLDDE 534

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +IE++ + V ++  G+I+                 + +  K+ D++       T + +L
Sbjct: 535 DLIERDDMVVTVTLDGYIKRTPLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVL 594

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID-LNHNQDIVTAFVYDSTCK------LL 615
             ST GK Y L    L  G     G  I  L+  L+ ++ I T               ++
Sbjct: 595 FFSTAGKVYRLKVWKLPEGGPTTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVV 654

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVT-GDHVAVVGENRKLLI 672
             ++KGN               GK  +K     E+++  V  V   D V +  ++ K + 
Sbjct: 655 FATAKGNVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIR 714

Query: 673 FSIDQIPE-MSRG-KGVRLQSYKDGGISDVICFKICEGLT-------------------- 710
           F+ + + E  SR   GVR     DG     +      G T                    
Sbjct: 715 FAAEDVREFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPWKGEKEGD 774

Query: 711 -----------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                             +      Y +  +        RGG G +      R+G  ++S
Sbjct: 775 PDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNIDRNGSVVAS 834



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             S  +  +   +GD +        T      + + +   +        +G  E    L 
Sbjct: 726 RTSTGVRGMKLADGDEVVSLSTLGATGT----TPEEREQYIK---FAPWKGEKEGDPDLT 778

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
              ++       + +    +L V + G   +    E     R G+  + + + ++   VV
Sbjct: 779 PERYDA------LKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNIDRNGSVV 832

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                 TG+ + +V +  KL+   ++ +  M R   GVRL
Sbjct: 833 ASFVVQTGEQLMLVTDQAKLIRIGLESLRVMGRNTAGVRL 872


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/757 (33%), Positives = 416/757 (54%), Gaps = 30/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L+ L  LE  +I +E   + A  +++  +L    + ++ +  E+ E+KE ++     
Sbjct: 421 DMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYAD---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             +R T  E  R +   L + +I+ E I +  +N+G+++          +     +SAL+
Sbjct: 477 --KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALN 532

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D  +    A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +
Sbjct: 533 TIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKV 592

Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
               V   +    +++ ++  G        E       G   +K   ++ +  V  +   
Sbjct: 593 RDTIVIKEFLPEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDV 652

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + +   +     F  D I    R  +GV+  + + G +              +   
Sbjct: 653 NKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTIT 712

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +  +        RGG G +  K   ++GK +S
Sbjct: 713 ENGYGKRTSLDEYPQYNRGGKGVINLKVNEKTGKVVS 749



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 147/443 (33%), Gaps = 33/443 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMN 344
           +L  A++   +      + E++  ++     S D  +  E +   +  +D++ R  L+M 
Sbjct: 364 DLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSILDMK 423

Query: 345 VLSMGRVPQVM---PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           +  +  + +         I       R  +      + +   +      K        I+
Sbjct: 424 LQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIE 483

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLA 456
           E    I  ED  K   +      +  V  I   + ++ R+  +       I+ +    + 
Sbjct: 484 EERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKIT 543

Query: 457 EKEKIDSLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
               +D+++      + +N  A EI ++          GR  +    +S  +K      +
Sbjct: 544 SASTLDTIMVFTDRGKVYNIRAYEIPDLSRQ-----SRGRLLSNIINLSEGEKVRDTIVI 598

Query: 515 IE--KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRIL 564
            E   E   V I+  G I+              L A+  KE D +     +     + IL
Sbjct: 599 KEFLPEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEIL 658

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           + + DG         + +     + ++ +     +  +    + +    +L ++  G   
Sbjct: 659 IATHDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGK 718

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPE 680
                E     R GK  + +   EK   VV V      + +  +  N  ++  SI++I  
Sbjct: 719 RTSLDEYPQYNRGGKGVINLKVNEKTGKVVSVLEVSEDEELMCITSNGIVIRTSINEISR 778

Query: 681 MSRGK-GVRLQSYKDGGISDVIC 702
           + R   GVR+    D      I 
Sbjct: 779 IGRATQGVRIMKVADDEKVAAIT 801



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 78/220 (35%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KE+   + +   ++T+  E    + + L     +++   + +   
Sbjct: 590 EKVRDTIVIKEFLPEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 649

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  ++GD +  A+     +  +L
Sbjct: 650 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDIL 709

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L        +V+        +L+ ++S G   
Sbjct: 710 TITENGYGKRTSLDEYPQYNRGGKGVINLKVNEKTGKVVSVLEVSEDEELMCITSNGIVI 769

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               +EI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 770 RTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDL 809


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 403/816 (49%), Gaps = 86/816 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+GL  GA +K
Sbjct: 5   DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEV+GK HPHGD SVYD+LVR+AQ F  RYPL  GQGNFG++DGDSAAA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT++AE +L  + ++ VD ++ ++    EP V P+ FPN+L NG  GIAVGMAT IP 
Sbjct: 125 ARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +A ID+P+I I+ L++++  PDFPTGGI +     + E+Y  GRG   +R
Sbjct: 185 HNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGI-IYGYAGVYEAYHTGRGRVVMR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+   EEV  G   +VVTE+PYQV KSR +E+IA+ +  +RI  + D+RDES  D   ++
Sbjct: 244 AKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + +++   ++  S ++  F +NM  L  G  PQV+ L   ++ ++ HR E++ 
Sbjct: 304 IELKQGANAEIVKNQVYKHSRLQDTFGVNMVALV-GGRPQVVTLKDAIRHYVDHRHEIVV 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---------- 423
           RR+ + +     R  IL+GL +A  ++D +IAIIR+         +  +           
Sbjct: 363 RRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDD 422

Query: 424 --------------TENQ----------------------------VDAILNLRLRSLRK 441
                          E Q                             +AIL LRL  L  
Sbjct: 423 LRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTG 482

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I  E ++++ +  +   +LNS  ++   I  E+  VKE F         R T  +
Sbjct: 483 LEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE------RRTEID 536

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKI 553
            +  D   + + +IE++ + V I+N+G          R+     V +     +E D ++ 
Sbjct: 537 YTGGD-DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEH 595

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF----- 606
               H+ D +LL +  G+ + L    +  G     G +I+ LID++ +  +         
Sbjct: 596 LYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKE 655

Query: 607 -----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 + ++  +L  + +G                G   +K+   +++       GD+ 
Sbjct: 656 NFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNT 715

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKIC--EGLTWIDSAG 716
           V V     + + F       M R  +GVR      D  +  +I       + L  +  A 
Sbjct: 716 VVVASSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAE 775

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +        +  RGG G +      R+G  +S
Sbjct: 776 HGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVS 811



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 82/205 (40%), Gaps = 21/205 (10%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G ++        +  S  +  +   EGD L  A      + +++ S+ G+A  
Sbjct: 668 VLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASSGGRAVH 727

Query: 575 LPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEE 628
              G+    R  G   + +  ++L  +Q++V              +L ++  G       
Sbjct: 728 FDEGD---ARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGKRTAL 784

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENRKLLIFSIDQIPEMSR- 683
           S+     R GK  + ++  ++   +V + G    + + V+ E   ++   + +I  M R 
Sbjct: 785 SDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRN 844

Query: 684 GKGVRLQSYKDGG-ISDVICFKICE 707
            +GV++   KDG  I+DV      +
Sbjct: 845 TQGVQVIDLKDGDAIADVTRVADTD 869


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/738 (33%), Positives = 393/738 (53%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G     +++KSA+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGD  AA RYTE+R+ +
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ ++ EP V P++FPN+L NG  GIAVGMAT IP HN+ E
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LAL+DNP++S E L+E++ GPDFPTGG+++  R    ++Y  GRG   +RA   V
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAATTV 260

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV++ IPYQV K+ +IE+IAE    K+I  +  ++DES  D   V+    R
Sbjct: 261 EEIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKR 320

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               ++++  ++  + M+T F  NM  L+ G  P+ + L G L  +L  R +V+ RR+++
Sbjct: 321 DATAEVVLNQLYRFTPMQTSFGCNMLALN-GGKPEQLTLRGFLSAFLDFREDVIARRTAY 379

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            ++    R  +L GL +A  N+DE++A IR+                             
Sbjct: 380 LLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALID 439

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L+E Q  AIL+LRL+ L ++   ++  EL++L A+ +    +L+S +
Sbjct: 440 DPTHKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRE 499

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+  ++E F+       RRT   E+         + +IE+E + V ++  G+
Sbjct: 500 RIMGIIREEMTAIREEFAVP-----RRT---EIVDWAGDMDDEDLIEREDMVVTVTAGGY 551

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 552 IKRTALADFRAQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 611

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +SKG+      S+   
Sbjct: 612 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTN 671

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGV 687
             R GK  +K   E++    +   +    D V +V  + + + F + ++    SR   GV
Sbjct: 672 VMRNGKIAMKFEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGV 731

Query: 688 RLQSYKDGGISDVICFKI 705
           R    K+G   +V+   +
Sbjct: 732 RGIRLKNG--DEVVSMSV 747



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 30/229 (13%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW-IRS--------LKSHSVDLSALHFKEGDSL 551
           E    +   +   +  +E   ++++N G  IR            +S  +  +  K GD +
Sbjct: 683 EGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDEV 742

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDS 610
                           +D +A  L    L++G    E      + +   +    A +  +
Sbjct: 743 VSMSVIR----HFEAESDERASYLKMRRLMAGVTEDEGSDEDGNADAPLEQERYAEMSAA 798

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGE 666
              +L ++++G   +    +     R G+        +   + +       GD + +   
Sbjct: 799 ENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRGGDIVASFPVEQGDQIMLATS 858

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + +   +D I   SR  G             V  F      T +  A
Sbjct: 859 TGQSIRVPVDGISFRSRSAG------------GVRVFNTGAEETVVSVA 895



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           IL ++  G      + +       G+ +          DIV +F  +   ++++ +S G 
Sbjct: 802 ILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRGGDIVASFPVEQGDQIMLATSTGQ 861

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
           +  V    I   +R   G       +EE +  V  +   
Sbjct: 862 SIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQ 900


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 278/758 (36%), Positives = 431/758 (56%), Gaps = 25/758 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES     VRIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMFYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQ 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  R+   S  DL  +L  RG  G L+P+G+ +    
Sbjct: 709 YSGERTMRLSFKDLEAYLDTRGSRGQLLPRGWHKIDTL 746


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 234/780 (30%), Positives = 393/780 (50%), Gaps = 60/780 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V PS+ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI NPEI+ ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +V+T +PYQ  K+ +IE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R   P +++ +++ L+ +++ F  +M  L       ++ L  +L+ +L  
Sbjct: 314 DGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPI-LLTLRKMLEVFLEF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +       RRT   +++   +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RHAVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G +Y +PA  +   S    G  I  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYRVPQCSRTAKGTPIVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL++++ G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGG----------- 696
            V   V GD V +       + F +   ++  + R  +GVR  + ++G            
Sbjct: 665 WVRLAVPGDSVLIGSRAGMTIHFRLSDNELRPLGRTARGVRSMNLREGDSLVSMDVLPAE 724

Query: 697 ISDVICFKI--------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           ++D I   +               EG   + ++     +        L KR G+G    K
Sbjct: 725 LADQIAASVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 784



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 84/249 (33%), Gaps = 38/249 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                A  + L  +    +   ++++  G+I+  +  +        L A+  +EGD+L  
Sbjct: 606 IPREEAITSLLAVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNL--LSGRGHGEAIQLL-----------IDLNH 598
              A   D +L+ S  G    + L    L  L     G     L           +    
Sbjct: 666 VRLAVPGDSVLIGSRAGMTIHFRLSDNELRPLGRTARGVRSMNLREGDSLVSMDVLPAEL 725

Query: 599 NQDIVTAFVYDSTCK------------LLVVSSKGNAFIVEESEIIANTRKG--KTFLKV 644
              I  +   D                +LV S+ G    V  ++     R G     +K 
Sbjct: 726 ADQIAASVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF 785

Query: 645 SSE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
            ++ +++  +  +  G+ + +V E   ++    D IP+ SR   GVRLQ    G     +
Sbjct: 786 RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADV 845

Query: 702 CFKICEGLT 710
                E  T
Sbjct: 846 VLVPPEAET 854


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 288/747 (38%), Positives = 424/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 22  LTLGDYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 82  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF   Y+    EP + P++ P  L NG SGIAVG+AT IPSHN++E+
Sbjct: 142 AQLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFALLNGASGIAVGLATEIPSHNLREV 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++   L++ + GPDFP GG I+ S   I  +Y +GRG  +VRARW +E
Sbjct: 202 AAAAVALIRNPKLTHADLMQLVPGPDFPGGGQIISSDAEISAAYEVGRGSLKVRARWKIE 261

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           E+ RG W +VV E+P      +++E+I EL                       + LL+ +
Sbjct: 262 ELARGQWQLVVNELPPNTSCQKVLEEIEELTNPKIKAGKKTLTQEQANTKKTLLDLLDAV 321

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK+R+LD +  ++S+   + +E+  PLN+ ++     P    L  
Sbjct: 322 RDESGKDAPVRLVFEPKSRALDQNEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGA 381

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 382 ILGEWVGFRQLTVTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMS 441

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 442 AFGLSERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLANESAMKRLLIKEI 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                    +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 502 E------GDARQFGDDRRTLIQQEKRA---TFEARVIDEPVTVVVSQKGWVRALKGHGLD 552

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ +++P   L  GRG G  +  LI+L   
Sbjct: 553 PASFSFKAGDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLIELESG 612

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  F   +   LL+ SS G  FI +  ++I+  + GK F+ +         + V   
Sbjct: 613 THLMHYFAAGAEQPLLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEGAVPLAPMPVMPL 672

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +S  G+GV L + +D   + V    I      +   G
Sbjct: 673 ATQVACLSAQGRLLVFGLDEMKTLSAGGRGVILMALED-KEALVQALAIDGRGVVLQGTG 731

Query: 717 RSYNRSEND-----LLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 732 RGGKAQEVVLAGAALAPLVGKRARKGR 758


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/795 (31%), Positives = 396/795 (49%), Gaps = 65/795 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+  +      E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 5   VEPNNGVPGEFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 64

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID
Sbjct: 65  ELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSID 124

Query: 123 GDSAAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            D  AA RYTE+R+  +  E +L+ ++ + VDF D ++    EP V P++ P LL NG+S
Sbjct: 125 NDPPAAMRYTESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ E  +ALI NPE++  +L + I GPDFPTGG I+  R  I E
Sbjct: 185 GIAVGMATNIPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQIL-GRNGIQE 243

Query: 242 SYRLGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +Y  GRG   +R    +E +          +++T++PYQ  K+ LIE+IA+++  K++  
Sbjct: 244 TYLTGRGSVTMRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEG 303

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F L+ +++ F  NM  L  G  P  + L
Sbjct: 304 ISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGE-PVTLSL 362

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
             +L+ +L  R E + RR+S+ ++  + R  +L GLL+A   +D II +IR        K
Sbjct: 363 LRMLQVFLDFRVETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAK 422

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +     LTE Q DAIL ++LR L  LE  +I+ E ++LL        +L +  + ++ 
Sbjct: 423 AKLQELHRLTEVQADAILQMQLRRLTALEADKIRLEHEDLLKRIADFQDILANKPRVFDL 482

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++KE +        RRT   E+           +I  E   V+++  G+++ + 
Sbjct: 483 IKKELIQLKEKYEAP-----RRT---EILDLGGGIDDIDLIANERSVVLLTETGYLKRMP 534

Query: 535 --------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
                     +   S    +  + +K+ +  +  D +LL S  G AY+LPA  +   S  
Sbjct: 535 VNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSDRGVAYSLPAYRVPISSRS 594

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  +  L+ +   + I +      +D    LL+++  G       S        G   
Sbjct: 595 AKGTPVVQLLPIPREEAITSLLSVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIRANGLIA 654

Query: 642 LKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG- 696
           + +   + +  V    +GD V +       + F +  D++  + R  +GVR  + + G  
Sbjct: 655 ISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKGDS 714

Query: 697 ----------ISDVIC-------------------FKICEGLTWIDSAGRSYNRSENDLL 727
                     ++D I                      I EG   + ++     +      
Sbjct: 715 LVGMDVLPRELADRIAGTNNDDSDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQ 774

Query: 728 GWLGKRGGVGSLVPK 742
             L KR G+G    K
Sbjct: 775 FRLQKRAGMGLRAIK 789



 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 89/255 (34%), Gaps = 46/255 (18%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                A  + L  +  + +   ++++  G+I+        K  +  L A+  ++GD+L  
Sbjct: 606 IPREEAITSLLSVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIRANGLIAISLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A + D +L+ S  G    + L    L         ++ + +L     +V   V    
Sbjct: 666 VRLAASGDSVLIGSRKGMTIHFRLNDDELRPLGRTARGVRSM-NLRKGDSLVGMDVLPRE 724

Query: 610 -----------------------------STCKLLVVSSKGNAFIVEESEIIANTRKG-- 638
                                            +LV S+ G    V  ++     R G  
Sbjct: 725 LADRIAGTNNDDSDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMG 784

Query: 639 KTFLKV-SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
              +K  +  + +  + V   G+ +  V E   ++  S D+I + SR   GVRLQ    G
Sbjct: 785 LRAIKFRNDGDSLVGLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGVRLQRLDSG 844

Query: 696 G-ISDVICFKICEGL 709
             +S+V+     + +
Sbjct: 845 DHLSEVVLVPPEQEV 859


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 269/750 (35%), Positives = 431/750 (57%), Gaps = 28/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 58  LNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIA
Sbjct: 118 SFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ EI +A + L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y 
Sbjct: 178 VGMATDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYE 237

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + AK++P+LEDIRDE
Sbjct: 238 QGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDE 292

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           +  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +   P V  L  IL 
Sbjct: 293 ADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILN 352

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I IIR+ED PK  ++ RF+
Sbjct: 353 EWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFN 412

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILNLRLR L KLEE Q+K+E D L  E+  ++++L S ++    I  EI+E 
Sbjct: 413 LSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQED 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + ++       R +   E   A   +         P+TV++S  GW+R  K H +D  +
Sbjct: 473 AKKYASP-----RMSQLVEREEAKMISESDMT----PVTVILSEMGWVRCAKGHDIDPKS 523

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD+        +   ++ + + G++Y L   +L S R  GE +   ++L     I
Sbjct: 524 LSYKAGDNYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATI 583

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
               +     +LL+ S  G  FI +  ++IA  + GK  + +    K+     +      
Sbjct: 584 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTAL 643

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD------VICFKICEGLTWIDS 714
           V  +    ++LIF    +P +S+GKG ++ +       D       +     +      S
Sbjct: 644 VVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYS 703

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             R       DL  +  +RG  GS +P+G 
Sbjct: 704 GKRKIVLKPEDLQKFRAERGRKGSTLPRGL 733


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 245/757 (32%), Positives = 407/757 (53%), Gaps = 28/757 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  +S+   L E YL YA+S I  RA+PD+RDG KPVHRRI++AM +  L     +KK
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA  VGEV+ + HPHGD +VY ++VR+AQ F  RY L+ GQGNFG+ID D  AA RYTEA
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT+ AE +L  ++++ V F   +++  +EP V P+  P LL NG+ GIA+GMAT++P+H
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  A +  ID+ +  I+ L+ YI GPDFPT GI +  +E I E+Y  G+G  ++RA
Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGI-IYGKEGIKEAYTTGKGRIKLRA 263

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313
           R  +EE  +    IVV E+PY V K+ L EKIAEL+   +I  + DIRDES+      ++
Sbjct: 264 RLEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLI 323

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +   +++  +F  +D+ET F +    L  G  P+V+ L  ++K ++ HR EV+ 
Sbjct: 324 IELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGE-PKVLNLKELIKYFVDHRVEVIT 382

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           +R+ + +     +  IL+GLLIA  NI+E+I IIR     D  +  +++RF L+E Q  A
Sbjct: 383 KRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQA 442

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++ L+ L  LE+ +I+ EL  L       + LL   ++    I  E++++ E +    
Sbjct: 443 ILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKIAEKY---- 498

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542
             G  R +       D    ++ +I  E + V I+ +G+I+ + + S          +  
Sbjct: 499 --GDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGVQG 556

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
              +    ++    A T D + + +  GKA+ +    + +      G++I+ +++L   +
Sbjct: 557 GKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKISQGKSIKFILNLAPEE 616

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            I + F    +D    +++V+  G    +E   +    ++G   L + + +++  V  V 
Sbjct: 617 KITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSAVQ 676

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           +GD   +       L  + ++I +M R   GV+  +  D  I  V    I +G + I   
Sbjct: 677 SGDDFIMTTATGLALRITEEKIRKMGRAAAGVKGIALDDDDI-CVSGNAIHKGESLIVIT 735

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +  +     +  RGG G +  K   ++GK +S
Sbjct: 736 ENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGKVVS 772



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 12/199 (6%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++++  G I+ +       +    + AL  +  D L       + D  ++ +  G A  
Sbjct: 633 IIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSAVQSGDDFIMTTATGLALR 692

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +    +         ++  I L+ +   V+         L+V++  G    +   +    
Sbjct: 693 ITEEKIRKMGRAAAGVKG-IALDDDDICVSGNAIHKGESLIVITENGIGKRLSSKQFNVK 751

Query: 635 TRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R GK  + +  + K   VV V      D + VV  +   +    D IPE+ R  KGV++
Sbjct: 752 GRGGKGQIYIKPDNKTGKVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKI 811

Query: 690 QSYKDGGISDVICFKICEG 708
            +  DG     +    C+ 
Sbjct: 812 VNISDGARVSDLAVVPCDN 830


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/843 (29%), Positives = 391/843 (46%), Gaps = 106/843 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D ++  + + E +   + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  
Sbjct: 5   TDTLTPPSPMGEYD--RIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQ 62

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G   G  ++KSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D
Sbjct: 63  EGGFVAGRPYRKSAKIVGDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMD 122

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  A+ RYTEAR+ +VA  +L  +D+D VDF + Y+    EP V P+ FPNLL NG  G
Sbjct: 123 PDPPASMRYTEARLEKVANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  LA I NP I+ E+L+EYI GPDFPT  +I+  +     +
Sbjct: 183 IAVGMATNIPPHNLGEVIDGCLAFIANPAITSEELIEYIPGPDFPTAPLIL-GQSGARSA 241

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +RAR  VE        IV+T IPYQV K+ L+EKIAE    KRI  + DIR
Sbjct: 242 YLTGRGSIMMRARHEVETGRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIR 301

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES+ +   V+    R   P++++  ++  S  +  FP NM  +  G  P+V+ L  I++
Sbjct: 302 DESSREGVRVVVDLKRDASPEVVLNQLWRYSPAQASFPANMLAI-RGGRPEVLALRDIIQ 360

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------ 416
            +++ R +V+ RR+ F +     R  IL GL++A  N+DE++AIIR    P         
Sbjct: 361 AFISFREQVITRRTKFELNKARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLR 420

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       + L+E QV AIL+LRL  L  L   +I  EL 
Sbjct: 421 KEWPIGDIAQYIALVEAIEPSSDEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELK 480

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + E   S+L   ++ +  +  E++ +++ ++             E++ A      +
Sbjct: 481 ELATKIEYYLSILADRRKLYQVMREELQAIRDQYATP--------RMSEIAPAWDGVDDE 532

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +IE+E + V +++ G+I+                 S++  K+ D++       T + +L
Sbjct: 533 DLIEQEDMVVTVTHGGYIKRTPLHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVL 592

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLV 616
             +  G+ Y L    L  G     G  +  L+ L  ++ +                 ++ 
Sbjct: 593 FFTNTGRVYRLKVWKLPEGSPTTKGRPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVF 652

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673
            + +G                GK  +     S +++  V  +  D  + +  +  K + F
Sbjct: 653 ATEQGMVRRNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRF 712

Query: 674 SIDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICEGLT--------------------- 710
           +     E  SR G GVR    K+G    V+   +   L+                     
Sbjct: 713 AATDARETKSRTGIGVRGMKLKEG--DKVVSLAVLHPLSHDMETREAYLRGAVWKNNDTD 770

Query: 711 -----------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV---PKGFPRSGKF 750
                             +      Y +  +        RGG G      P    R+G  
Sbjct: 771 HTLDTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPV 830

Query: 751 LSS 753
           ++S
Sbjct: 831 VAS 833



 Score = 44.7 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 21/149 (14%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
              + +  +  KEGD +      H     +               L             +
Sbjct: 723 RTGIGVRGMKLKEGDKVVSLAVLHPLSHDM---------ETREAYLRGAVWKNNDTDHTL 773

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKL 652
           D    Q+     + ++   +L +++ G   I    E     R G+    +    + K   
Sbjct: 774 DTELAQE-----MEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNG 828

Query: 653 VVKVT-----GDHVAVVGENRKLLIFSID 676
            V  +     G  + +V +  KL+   ID
Sbjct: 829 PVVASFPVRHGMQLMLVTDQAKLIRLPID 857


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 229/763 (30%), Positives = 404/763 (52%), Gaps = 36/763 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD RDG KPVHRR+++ M ++G+     +KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E  +A  A I+N +ISIE+++EYI  PDFPTGGI +   E + +++  GRG   +RA
Sbjct: 185 NLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGI-IYGYEGVKKAFYTGRGRIVLRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE+ +G  CI+V EIPYQV K+ +I +  EL+   ++  +  IRDES  +   +++
Sbjct: 244 KVHLEEI-QGRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++ +P +L+ ++F  + ++T F +N   L  G+  Q + +  +++ ++ HR++V+ R
Sbjct: 303 LLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQ-LNIKDLIQHFVDHRQDVIIR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           R+ + ++    R+  L G L    ++D++I +I+               F L+ENQ  +I
Sbjct: 362 RTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIKMFKLSENQSRSI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL++L  LE  +IK E + L+ +   + ++L     +   I  E+ ++++ +     
Sbjct: 422 LDMRLQNLTSLELKKIKKEYEELVKKIAYLKNVLIQHSIRMQIIKKELLDIQDKYQD--- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
              +R T  +    +     + +IE E + + IS+ G+I        +      +     
Sbjct: 479 ---KRRTQIDYLGNEVHI--EDLIEDEQVVLTISHAGYIKRTSLSEYKRQGRGGIGNRGA 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
             +E D  K  L A     +L  +  GK + L    +  G     G AIQ +I L  +  
Sbjct: 534 SARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNMIHLQPDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +    +        Y     +++V+ KG              + G   + +   + +   
Sbjct: 594 VNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEA 653

Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGL 709
           +   G+ HV +  ++ K++ FS  ++    R   GVR  +    +  +  +IC +  E  
Sbjct: 654 ILTKGNSHVFIAVKSGKIIRFSEKKVRATGRNSSGVRGINLSISEDTVIGMICVEGQEKG 713

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + + + +  N     +  RGG G        ++G  +S
Sbjct: 714 YLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQKTGSLIS 756



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 14/194 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++++ +G I+     +        ++A+  ++GDSL  A+       + +    GK   
Sbjct: 614 VMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIR 673

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEII 632
                + +   +   ++ +        ++     +      LLVVS KG        +  
Sbjct: 674 FSEKKVRATGRNSSGVRGINLSISEDTVIGMICVEGQEKGYLLVVSEKGFGKRTNLKDYR 733

Query: 633 ANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
              R GK      +   +   + +      D + ++ ++  ++  S+  I  M R  +GV
Sbjct: 734 ITNRGGKGIKTINITQKTGSLISIKHVTNQDDLMIIKKSGIIIRISVSDIRVMGRDTQGV 793

Query: 688 RLQSYKD-GGISDV 700
           RL + K+   I+DV
Sbjct: 794 RLINLKEKDEIADV 807


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 278/766 (36%), Positives = 428/766 (55%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++   L +     +  ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MTDQANLFDTAAPADGGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+GL+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+++ +D   VDF+  Y+    EP + PS+ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN++E+ +AA+ALI NP+++ E+L+  + GPDFP GG I+ S  +I 
Sbjct: 181 SGIAVGMATEIPSHNLREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAIS 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
           + YR GRG  +VRA W +E++ RG W  VVTE+P+     R++E+I EL           
Sbjct: 241 DIYRSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKS 300

Query: 290 -------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                  +    + +L+ +RDES  D  VR+V  PK+++ D       +   + +ET   
Sbjct: 301 LSPEQLALKQTVLAMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+  R   + RRS F++Q ++ R+ IL+G     LNI
Sbjct: 361 INLVMIGGDGKPRQKALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L+E Q D IL +RLR L +LE  +I+ EL  L +EK  
Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRSEKST 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI       +     G +R T  EV+        +  +  EP+
Sbjct: 481 LQDLLDNPSSMKRLVIKEIE------ADEKQFGDKRRTLIEVAEKAVV---ETRVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS +GW+R+   H  D +   FK  D+L       T D +L+  ++G+ Y++    L
Sbjct: 532 TVVISQKGWVRARTGHGHDAAQFTFKASDALYDTFECRTVDTLLVFGSNGRIYSVAVAAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G  I  L++L     ++  F   +   LL+ S+ G  F  +  ++++ TR GK 
Sbjct: 592 PGARGDGVPITTLVELASGTRVLHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKA 651

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ +   ++      +      +A + E  ++L+F ID+I  + + G+GV L    +   
Sbjct: 652 FITLDEGDEPLTPRPIFAGASAIACLSEKGRVLVFGIDEIKSLTAGGRGVILMDL-EKNE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGS 738
             +    I +    +   GR         S + L   +GKR   G 
Sbjct: 711 KLLAAQPISQRGVVVSGIGRGAKAQEILLSASGLAVHIGKRARKGK 756


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 250/771 (32%), Positives = 412/771 (53%), Gaps = 31/771 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + +   +    V+ V +   +E+ Y+ YA+S I  RA+P + DG KPVHRRI++A
Sbjct: 1   MSSD-VPDPTDVQARAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+  G++ +KS+ IVGE +G  HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MHEMGVSSGSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+ ++E +L  +D+D VDF   Y++   EP V P+ FPNLL NG+
Sbjct: 120 MDGDPAAAQRYTEARMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LID+P+ ++E L++++ GPDFPTG   +  R++I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGA-NIVGRDAIY 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y+ GRG  RVRA + VEE   G   IVVTE+P+Q  K+RL+E+IAE +    I  + D
Sbjct: 239 SAYKTGRGRIRVRAEFEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISD 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   ++    R  + +++   + + + +E  F +    L  G+ P+V+ L   
Sbjct: 299 LRDESDRDGVRIVIELKRGANTEVVKNRL-LENHLERTFGVINLALVDGQ-PRVLSLKET 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L+E++AHRREV+ RRS + ++  + R  IL+G L A  N D+++ +IRN +     K  +
Sbjct: 357 LEEYVAHRREVVRRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENL 416

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              +  +++Q D I+ ++L SL  +E  +I+ E + + AE E+++++L S ++  + I  
Sbjct: 417 QDAYDFSQDQADHIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILESEEELLSVIKD 476

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+R +KE +        RRT+  E          + +I +E + VV++   +++ +    
Sbjct: 477 ELRGIKEEYGDE-----RRTSIIEDQGT---VTHEDLIPEEEVFVVMTEDDYVKRMPIDQ 528

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            D              KEGD +     A+T D +L  +  GK Y L    +        G
Sbjct: 529 FDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI      D       + + +  G        E       G     +
Sbjct: 589 KSAVNILDLDPGEDITAIVDTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGIIAADL 648

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVI 701
              +++  V    G   + +  E    + F  D++  M R  +GV     +D   ++ ++
Sbjct: 649 EEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAMGRNARGVNGIKLQDDDAVAGLV 708

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                +G   +      Y +           R G G +  K   R+G   +
Sbjct: 709 ATDEADGQALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRNGPVTA 759



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 14/214 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIA 554
           +      A +            + ++ G+++       D      + A   +EGD L   
Sbjct: 598 DPGEDITAIVDTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGIIAADLEEGDELVDV 657

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--C 612
                +  +++ +  G         + +   +   +   I L  +  +      D     
Sbjct: 658 EVTDGSQDLVIATEGGMTIRFDEDEVRAMGRNARGV-NGIKLQDDDAVAGLVATDEADGQ 716

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENR 668
            LL V+  G       SE    +R GK  + + + ++   V  V      D + ++ E+ 
Sbjct: 717 ALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRNGPVTAVKAVDDDDQLVMMSEDG 776

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           +++   +D+I  + R   GV +   +DG     +
Sbjct: 777 QIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASV 810



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 20/191 (10%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA ++ E  E+       G +               +                  
Sbjct: 639 RSTGIIAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDE---------------- 682

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY--TLPAGNLLSGRGHG 587
           +R++  ++  ++ +  ++ D++   +     D   LL+     Y          +   +G
Sbjct: 683 VRAMGRNARGVNGIKLQDDDAVAGLVATDEADGQALLTVTRNGYGKRTRLSEYRTQSRYG 742

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + +  +   + N  +      D   +L+++S  G        EI    R   G   + V 
Sbjct: 743 KGLIDIKTGDRNGPVTAVKAVDDDDQLVMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVE 802

Query: 646 SEEKMKLVVKV 656
             + +  V  +
Sbjct: 803 DGDAVASVDDI 813


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/821 (31%), Positives = 392/821 (47%), Gaps = 120/821 (14%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y +L
Sbjct: 1   MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+D Y
Sbjct: 61  VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + +L+
Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPYQV 
Sbjct: 181 ELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R    D+++  ++  + ++T 
Sbjct: 240 KASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTS 299

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F  NM  L+ G  P+ + L  +L+ ++A R EV+ RR+ F +     R  +L GL IA  
Sbjct: 300 FGCNMVALN-GGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVA 358

Query: 399 NIDEIIAIIRNEDKPKPVMVS-----------------------------RFSLTENQVD 429
           NIDE+IA+IR    P                                    ++L+E Q  
Sbjct: 359 NIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQAR 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+LRL+ L  L   ++  EL+ +  E      +L S  +  N +  E+  V++ F+  
Sbjct: 419 AILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E+         + +I +E + V +S+ G+I+          +      S
Sbjct: 479 -----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRS 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
            +  KE D +     A+T   +L  S+ G  Y      L  G     G+A+  ++ L   
Sbjct: 531 GMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQG 590

Query: 600 QDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKL 652
           + I T               ++  +++G     + S+ +   R GK  +K+    +++  
Sbjct: 591 ERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILS 650

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI---- 705
           V   T  D V +     + + F +  +     R   GVR  +  +G    VI   I    
Sbjct: 651 VDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEG--DKVISMAILHHV 708

Query: 706 -------------------------CEGLTWI--------------------------DS 714
                                     + +  +                            
Sbjct: 709 DATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTV 768

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLS 752
           +   Y +  +     +  RGG G        ++   GK ++
Sbjct: 769 SEFGYGKRSSSYEFHISGRGGKGIRAT-DTSKTDEIGKLVA 808



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            +S+ +  ++  EGD +            +  +   ++  L   ++   R  G      I
Sbjct: 683 RNSIGVRGINLAEGDKVISMAIL----HHVDATPAERSAYLK-RSIAERRAQGADDADDI 737

Query: 595 DLNHNQDIVTAFVYDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF---- 641
            +   +D+                    +L VS  G        E   + R GK      
Sbjct: 738 -VVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFHISGRGGKGIRATD 796

Query: 642 -LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K     K+  +  V G D + +V +  +L+   +D I    R  KGV + +  DG   
Sbjct: 797 TSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADG--E 854

Query: 699 DVICFKICEGLTWIDSAGRS 718
            V+  +        +  G  
Sbjct: 855 KVVSVERISDADSDEENGNG 874


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 243/781 (31%), Positives = 410/781 (52%), Gaps = 38/781 (4%)

Query: 1   MGVDNISNSNT----------LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGF 50
           M V   +N NT           + + V  +S+   L+E YL YA+S I  RA+PD+RDG 
Sbjct: 1   MAVKKNNNDNTEERKYSTLTKDILKRVDHISIENELKESYLNYAMSVIVSRALPDVRDGL 60

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM +  L     +KKSA  VGEV+ + HPHGD +VY ++VR+AQ F  RY 
Sbjct: 61  KPVHRRILYAMYDANLTHDKPYKKSAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYL 120

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++D D  AA RYTEARMT+ AE +L  ++++ V F   +++  +EP V P+
Sbjct: 121 LVDGQGNFGSVDDDPPAAMRYTEARMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPA 180

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
             P LL NG+ GIA+GMAT++P HN++E+  A +  ID+ +  I+ L+ YI GPDFPT G
Sbjct: 181 TVPQLLVNGSMGIAIGMATNMPPHNLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAG 240

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
           I +  +E I E+Y  G+G  ++RAR  +EE  +    IVV E+PY V K+ L EKIAEL+
Sbjct: 241 I-IYGKEGIKEAYTTGKGRIKLRARLEIEETKKDREAIVVKELPYGVVKTNLHEKIAELV 299

Query: 291 IAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              +I  + DIRDES+      ++    + +   +++  ++  +D+E  F +    L  G
Sbjct: 300 KQGKIEGVADIRDESSNRSGIRLIIELKKGVATQIVLNQLWKHTDLEITFGIINLALVNG 359

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P+V+ L  ++K ++ HR EV+ +R+ + +     +  IL+GLLIA  NI+E+I IIR 
Sbjct: 360 E-PKVLNLKELIKYFVDHRVEVITKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQ 418

Query: 410 EDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
            +     +  ++S+F L+E Q  AIL++ L+ L  LE+ +I+ EL  L       + LL 
Sbjct: 419 SENTEAARNTLMSKFKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             ++    I  E++ + E +      G  R +       D    ++ +I  E + V I+ 
Sbjct: 479 HPEKILAVIKDELKNIAEKY------GDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITT 532

Query: 527 RGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           +G+I+ + + S          +     +    ++    A T D + + +  GKA+ +   
Sbjct: 533 QGFIKRVPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVH 592

Query: 579 NLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA 633
            + +      G++I+ +++L  ++ I + F    ++    +++V+  G    +E   +  
Sbjct: 593 EIPALTKTSQGKSIKFILNLAPDEKITSYFTVSDFNPKQSIIMVTKMGTIKKMELKHLEN 652

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             ++G   L + + +++  V  V +GD   +   +   L  +  ++  M R   GV+  +
Sbjct: 653 AKKRGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNMGRAAAGVKGIT 712

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             D  I  V    I +G + I        +  +        RGG G +  K   ++G  +
Sbjct: 713 LDDNDI-CVSGNGIHKGESLIVITENGIGKRLSSKQFNAKGRGGKGQIYIKPDNKTGNVV 771

Query: 752 S 752
           S
Sbjct: 772 S 772



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 16/200 (8%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++++  G I+ +       +    + AL  +  D L       + D  ++ +  G A  
Sbjct: 633 IIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELIGVSAVESGDDFIMTTASGLALR 692

Query: 575 LPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
           +    +   R  G A   +  I L+ N   V+         L+V++  G    +   +  
Sbjct: 693 INEQKV---RNMGRAAAGVKGITLDDNDICVSGNGIHKGESLIVITENGIGKRLSSKQFN 749

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           A  R GK  + +  + K   VV V      D + VV  +   +    D IPE+ R  KGV
Sbjct: 750 AKGRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIMVVTTDDMTIKIKADSIPELGRNAKGV 809

Query: 688 RLQSYKDGGISDVICFKICE 707
           ++ +  DG     +     +
Sbjct: 810 KIVNISDGAKVSDLAVVPAD 829


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 233/776 (30%), Positives = 396/776 (51%), Gaps = 56/776 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NP+++ ++L+  I GPDFPTGG I+  RE I E+Y  GRG   
Sbjct: 195 PPHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQIL-GREGIRETYLGGRGSIT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F   M  L  G    ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPI-LLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++ +
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            ++       RRT   ++    +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RYTTP-----RRTEILDLGGGLEDI---DLIANERSVVLVTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + ++
Sbjct: 605 PIPREEAITSLIPVSEFNDDMDLLMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALR 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGG---ISDVICFK 704
            V   V GD V +       + F +   ++  + R  +GVR  + ++G      DV+  +
Sbjct: 665 WVRLAVPGDSVLIGSNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVE 724

Query: 705 ICEGLT------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           + + +                    + ++     +        L KR G+G    K
Sbjct: 725 LADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 780



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 89/239 (37%), Gaps = 35/239 (14%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                A  + +  +    +   ++++  G+I+  +  +        L A++ +EGD+L+ 
Sbjct: 606 IPREEAITSLIPVSEFNDDMDLLMLTRGGFIKRTRLSAFSNIRSNGLIAINLEEGDALRW 665

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGR------------GHGEAIQLLIDLNH 598
              A   D +L+ S  G        +      GR            G G     ++ +  
Sbjct: 666 VRLAVPGDSVLIGSNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVEL 725

Query: 599 NQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEE 648
              I  +   D            +LV S+ G    V  ++     R G     +K  + +
Sbjct: 726 ADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTD 785

Query: 649 KMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICF 703
              + ++V   G+ V +V E   ++  S D IP+ SR   GVRLQ    G  +S+V+  
Sbjct: 786 DALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLV 844


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 237/782 (30%), Positives = 391/782 (50%), Gaps = 62/782 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NPE+    L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQIL-GRSGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G    ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPI-LLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++
Sbjct: 433 EIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   E+           +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RYPIE-----RRT---EILDLAGGLDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G AY LPA  +   S    G  +  L+
Sbjct: 545 TRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704
            V   V GD V +       + F +   ++  + R  +GVR  + ++G      DV+  +
Sbjct: 665 WVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALVSMDVLPVE 724

Query: 705 IC------------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +                         EG   + ++     +        L KR G+G   
Sbjct: 725 LADRVAQSSDDGGEAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRA 784

Query: 741 PK 742
            K
Sbjct: 785 IK 786



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 43/249 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +    +   ++++  G+I+  +  +        L A+  ++GD+L  
Sbjct: 606 IPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A   D +L+ S  G    + L    L         ++ + +L     +V+  V    
Sbjct: 666 VRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSM-NLREGDALVSMDVLPVE 724

Query: 610 --------------------------STCKLLVVSSKGNAFIVEESEIIANTRKG--KTF 641
                                         +LV S+ G    V  ++     R G     
Sbjct: 725 LADRVAQSSDDGGEAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRA 784

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-I 697
           +K  ++  + + ++V   G+ V +V E   ++  S D IP+ SR   GVRLQ    G  +
Sbjct: 785 IKFRTDSDVLVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRL 844

Query: 698 SDVICFKIC 706
           S+V+     
Sbjct: 845 SEVVLVPPA 853


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/763 (32%), Positives = 407/763 (53%), Gaps = 32/763 (4%)

Query: 10  NTLVEENVK---AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + L+EE +     V++   ++  +L YA+S I  RAIPD RDG KPVHRRI++ M ++GL
Sbjct: 54  SQLIEEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGL 113

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
              +AFKKSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD A
Sbjct: 114 HHSSAFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPA 173

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+++++  +L G+ ++ V+F   Y+  + EP V PS+FPNLL  G  GIAVG
Sbjct: 174 AAMRYTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVG 233

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+I  HN+ E   A +A   NP+IS+ +L+E+I GPDFPTGGII+   + I++++  G
Sbjct: 234 MATTIAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIIL-GTKGIIDAFETG 292

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   +R++  +E +  G   I+V+EIPY VQK+ +IEKIA L+  K I  + D+RDE+ 
Sbjct: 293 KGSISIRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETN 352

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    ++  P++++  +F  ++++  F +NM  L  G  P+++ L   L+ +L 
Sbjct: 353 RKGIRIVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGE-PKLLSLKDALRVYLD 411

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSL 423
           H++E++ RR  F ++  + R+ IL+GL IA  NIDE+I IIR      + +  +  +FSL
Sbjct: 412 HQKEIVIRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQKFSL 471

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q  AI+ +RL  L  L   +++ E+  LL     I  +LNS ++  + I  E+ E+K
Sbjct: 472 SEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKEILNSEQKLIDLIVEELEEIK 531

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E +      G +R T  +          + +I +  I ++ S +G+++            
Sbjct: 532 EKY------GDKRLTQIDSYAIAN-ISDEDLIPERNIAIIQSVKGYVKRINLSEYKVQNR 584

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
             V  S     E D L   +   T   +L+ ++  K Y + A  +   S +  G     L
Sbjct: 585 GGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPESSKQSKGIPFINL 644

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           I +  ++++V+      YD    L+ ++  G     +          GK  + +   +K+
Sbjct: 645 IQIEKDEEVVSILPAQNYDDGKFLVTLTQNGLIKKTKIEHFQRINTNGKIAMVILENDKL 704

Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
              + +  D   +V     K++ F + ++ +  R   GVR           +      EG
Sbjct: 705 VRAMILNNDEEIIVGSSEGKIVRFDLSEVRDTGRKSAGVRAIKLAPKH-KAISLSASSEG 763

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                     + +          KR   G +  K   ++GK +
Sbjct: 764 KYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKV-DKAGKLV 805



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 16/222 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK------EGDSL 551
              E      + L     +     V ++  G I+  K         + K      E D L
Sbjct: 645 IQIEKDEEVVSILPAQNYDDGKFLVTLTQNGLIKKTKIEHFQRINTNGKIAMVILENDKL 704

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
             A+  +  + I++ S++GK       +L   R  G     +  I L      ++     
Sbjct: 705 VRAMILNNDEEIIVGSSEGKIVR---FDLSEVRDTGRKSAGVRAIKLAPKHKAISLSASS 761

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
               +  + S G        +     R  KG   +KV    K+     V G + + ++  
Sbjct: 762 EGKYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKVDKAGKLVHSGFVEGSEDIIILNS 821

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC 706
               +  S++Q+ + SR  KGV++    KD  I  +    + 
Sbjct: 822 KGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVN 863


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/773 (32%), Positives = 406/773 (52%), Gaps = 48/773 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +   +  A+KKSA
Sbjct: 8   IVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD+AAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  ++++ V+F   Y+  +  P + PSK PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR- 255
            E+ +  LA I +  I++ +L+++I GPDFPT GI +  ++ I E+YR G+G   +RAR 
Sbjct: 188 NEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGI-INGKKGIEEAYRTGKGKIYIRARN 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              +        I+  EIPYQV KSRLIEKIAEL+  KRI  +  +RDES +D   ++  
Sbjct: 247 KIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +    ++++  ++ L+ ++  F +NM  L     P+ + L  ILK +L+HR E++ RR
Sbjct: 307 IKKEAMSEIILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKHFLSHREEIVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP----------------V 416
           S F +    +R  IL+GL IA +NI+ II +I+      + K                  
Sbjct: 366 SIFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKINQ 425

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               +  TE QV AIL+LRL  L  LE+ ++  E D L  + +++  +L S  +    I 
Sbjct: 426 KDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSRDRMREVIR 485

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  F       +RRT   E++  +     + +I +E + V +S+ G+++     
Sbjct: 486 DELVSIKNNFGD-----QRRT---EITENNPDISIEDLINQEDVVVTLSHSGYVKYQPLS 537

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                K      SA   KE D ++  +  +T D IL  S+ G  Y +    L   S    
Sbjct: 538 DYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHAK 597

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L+ L++ + I        +     + + +++G        E       G   + 
Sbjct: 598 GRPIVNLLPLSNKERITAILPIHEFKDNLNIFMATAQGIVKKSSLKEFKKPRIAGIIAIN 657

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDV 700
           + + +++  V    G +++ +  +N K++ F  + +  M R   GVR     K+  +  +
Sbjct: 658 LRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTMGRTASGVRGIKISKNDKVVSL 717

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           I     E +    + G  Y +        +  R   G +  K   ++GK + +
Sbjct: 718 IVPYKKESILIATNNG--YGKRTKITDFPIKSRATQGVISIKITKKNGKIIGA 768



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 73/199 (36%), Gaps = 12/199 (6%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHA 557
               A L     +      + + +G ++        K     + A++ +  D L      
Sbjct: 611 ERITAILPIHEFKDNLNIFMATAQGIVKKSSLKEFKKPRIAGIIAINLRANDELIGVSLT 670

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +  + I+L + +GK       ++ +       ++  I ++ N  +V+  V      +L+ 
Sbjct: 671 NGKNNIMLFTQNGKVVQFLENSVRTMGRTASGVRG-IKISKNDKVVSLIVPYKKESILIA 729

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIF 673
           ++ G     + ++    +R   G   +K+   + + +  +  V  D + ++     L+  
Sbjct: 730 TNNGYGKRTKITDFPIKSRATQGVISIKITKKNGKIIGAIQVVEKDQIMMITNAGTLVRI 789

Query: 674 SIDQIPEMSR-GKGVRLQS 691
              +I  + R  +GV L  
Sbjct: 790 RASEIGVLKRNTQGVILIR 808



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R++   +  +  +   + D +   +  +  + IL+ + +G        +        + 
Sbjct: 693 VRTMGRTASGVRGIKISKNDKVVSLIVPYKKESILIATNNGYGKRTKITDFPIKSRATQG 752

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           +  +     N  I+ A       +++++++ G    +  SEI    R   G   ++ S  
Sbjct: 753 VISIKITKKNGKIIGAIQVVEKDQIMMITNAGTLVRIRASEIGVLKRNTQGVILIRTSKN 812

Query: 648 EKMKLVVKV 656
           EK+  + ++
Sbjct: 813 EKVVALQRI 821


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/738 (33%), Positives = 391/738 (52%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR 
Sbjct: 25  SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+AAA RYTE RM +
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D++ VDF+D Y+ +D EP V P+++PN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  A LALI+NP+++ E+L+ Y+ GPDFPTGGI++  R    ++Y  GRG   +R++  V
Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRSKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 324 DATPEVVLNQLFRFTSMQTYFGCNMLALN-GGRPETLTLRRFLTSFIDFREDVVARRTAY 382

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            ++    R  IL GL +A  N+DE++A IR+                             
Sbjct: 383 ELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLID 442

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L+E Q  AIL LRL+ L ++   ++  EL  L  +  +   +L S  
Sbjct: 443 DPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSRD 502

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EV+E F+       RRT   E+         + +IE+E + V I++ G+
Sbjct: 503 RIMAIIRDELSEVREKFAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTITSGGY 554

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +     ++ +  K+ D +     A+T  ++L  +TDG +Y L    L 
Sbjct: 555 IKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRLP 614

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D         +++  +S G     + S+   
Sbjct: 615 LGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTN 674

Query: 634 NTRKGKTFLKVSSEEK---MKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRG-KGV 687
             R GK  +K   E +   +  V +    D V +V  + + + F    +    SR   GV
Sbjct: 675 VMRNGKIAMKFEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRATDVRVFNSRASTGV 734

Query: 688 RLQSYKDGGISDVICFKI 705
           R    +  G   V+   +
Sbjct: 735 RGIKLQ--GKDTVVSMSV 750



 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 22/223 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSH-SVDLSALHFKEGDSL 551
           E        +   +   +   ++++N G         +R   S  S  +  +  +  D++
Sbjct: 686 EGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRATDVRVFNSRASTGVRGIKLQGKDTV 745

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT---AFVY 608
                          ++D +A  L     ++G      +    + + N  I     A + 
Sbjct: 746 VSMSVIR----HFEATSDERAAYLKMRRAMAGLADDAELPDEEEGDANSQITQERYAEMS 801

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVV 664
                +L ++S G   +    +     R G     +       ++     V   D + + 
Sbjct: 802 AIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRGGEVVASFPVELDDQIMLA 861

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDVICFKI 705
               + +   +D I   SR   GV+   + K+  +  V     
Sbjct: 862 TSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWIAD 904



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           IL +++ G      + +       G  +  +       ++V +F  +   ++++ +SKG 
Sbjct: 807 ILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRGGEVVASFPVELDDQIMLATSKGQ 866

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT--GDHVA 662
           +  V    I   +R   G         E +  V  +   GD   
Sbjct: 867 SIRVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWIADQGDDEL 910


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/748 (36%), Positives = 417/748 (55%), Gaps = 41/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR+V
Sbjct: 27  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 87  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 147 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI +P++   +L   I GPDF  GG I+   E I + Y  GRG  +VRARW  E
Sbjct: 207 AQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQFE 266

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDI 301
           E+ RG W +VVTE+P      +++E+I E                     A  + LL+ +
Sbjct: 267 EMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDAV 326

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L  
Sbjct: 327 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 386

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+A R   + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 387 ILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALME 446

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE ++I+ EL +   ++ ++  LL++       +  EI
Sbjct: 447 RFKLSERQAEDILEMRLRQLARLEGFKIEQELADKREDQVRLQELLDNPASLKRLLIKEI 506

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 507 E------ADAKQYGDDRRTLIETAERA---VLETKVLDEPVTVIVSQKGWLRARQGHGHD 557

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL   
Sbjct: 558 ASQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVPVGGLPSARGDGQPVTTMIDLGSG 617

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             IV         + L+ +  G  F  + S++++  R GK F+ +   +++   V +   
Sbjct: 618 TRIVHTIAAAPDSRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFAG 677

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++    K L+F +D++  +   G+G  L    DG         I  G   + +AG
Sbjct: 678 AKQLALLSHKGKFLVFGLDEVKTLSGGGRGTILMGL-DGTDKLDQTVPIGAGG--LRAAG 734

Query: 717 RSYNRSEND------LLGWLGKRGGVGS 738
              N+   D      L  ++GKR   G 
Sbjct: 735 IYRNKHTEDILVGDALAPYIGKRARKGR 762


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/760 (33%), Positives = 416/760 (54%), Gaps = 37/760 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N + + +   ++  YL Y++S I  RA+PD+RDG KPVHRRI++AM E+ ++  + +KKS
Sbjct: 39  NEELIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKS 98

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 99  ARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEAR 158

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++AE +L  +++D +D+R  ++E   EP V P++ PNLL NGT+GIAVGMAT+IP HN
Sbjct: 159 MSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHN 218

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDN +ISI++L+ +I GPDFPTGGI +  +  I  +Y+ GRG  RV A+
Sbjct: 219 LGELSDGIIALIDNRDISIDELITHIKGPDFPTGGI-IYGKSGIYSAYKTGRGKVRVSAK 277

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +    +G   IV+TE+PYQV K+ LI++I EL+  K I  + D+ D S  +   ++  
Sbjct: 278 TEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVID 337

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + ++++  +   +D++T F + M  L     P+++ L  IL+++L HR +V+ R+
Sbjct: 338 IKKGEEAEIVLNKLLKFTDLQTTFGIIMLALVNNA-PKILNLKEILEKYLEHRYDVITRK 396

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F +     R  IL+GL  A  +IDEII+IIR        K  ++++F  TE Q DAIL
Sbjct: 397 TIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEIQTDAIL 456

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L  L   +I +E D L+     ++ +L   ++++  I  E+ E+K+ +  +   
Sbjct: 457 DMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKYGDA--- 513

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALH 544
              R T  E  R +     + +I+ E + V I+ RG+         ++ K     +S   
Sbjct: 514 ---RRTSIENDRYE--INIEDLIKNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTT 568

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D LK    A T D +++ S  GK Y++    +   S +  G+ I  +I+L+ N+ I
Sbjct: 569 TIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKI 628

Query: 603 VTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVT 657
                 D        L+ ++  G A   + SE     R GK  +    + +++K V   +
Sbjct: 629 SVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITS 688

Query: 658 G---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKIC--EGL 709
           G   D + +  +    + F  + I  M R   GVR       D  +S  + +     + +
Sbjct: 689 GSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEM 748

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           + +        +        + KRGG G        R  K
Sbjct: 749 SVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYN-LERRSK 787


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 287/766 (37%), Positives = 424/766 (55%), Gaps = 43/766 (5%)

Query: 6   ISNSNTLVEE-----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +++  TL ++     + ++++L    E  YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MTDQPTLFDQVPSAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+ L+  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+
Sbjct: 61  MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +++L+L  +D   V+F+  Y+    EP + P++ P LL NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN+ E+ +AA+A+I NP+IS  +L+E I GPDFP GG I+  + +I 
Sbjct: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---------- 290
           E Y+ GRG  +VRARW +E++ RG W  V+TE+P  V   R++E+I EL           
Sbjct: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKS 300

Query: 291 --------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                    A  + LL+ +RDES  D  VR+V  PK+++ D    M ++   + +ET   
Sbjct: 301 LTPEQQAQKAAILGLLDAVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LN+ ++     P+   L  IL EW++ R E + RR+ FRMQ ++ R+ IL+G     LNI
Sbjct: 361 LNLVMIGGDGRPRQKNLTDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  EK  
Sbjct: 421 DKVIRIIRESDEPKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIQQELAELRNEKST 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL++       +  EI         +   G  R T  E +        +  +  EP+
Sbjct: 481 LQDLLDNPSSMKKLVIKEIE------GDAKTYGDARRTIIEEAERA---TFEQKVIDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV+IS +GW+R+   H  D +   FK GDSL  A    T D +L   ++G+ YT+    L
Sbjct: 532 TVIISQKGWVRARTGHGHDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNAL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            + RG G  +  L++L     I+  F   +   LL+ S     FI + S++    + GK+
Sbjct: 592 PNARGDGVPVTTLLELASGSSILHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKS 651

Query: 641 FLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
           F  +           V  D   VA V  N +LL+F +D++  +S  G+GV L    +   
Sbjct: 652 FFTLDEGALPLAPTPVPTDASAVACVSGNGRLLVFGLDEMKTLSSGGRGVNLMEL-EKNE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
             V    I +    +   G      E  L        +GKR   G 
Sbjct: 711 KLVAAQAISQKGVVVYGTGNVGKAKEIALSAVSLALHIGKRARKGK 756


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 253/759 (33%), Positives = 416/759 (54%), Gaps = 30/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++   L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+   A  K
Sbjct: 68  QNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTAPHK 127

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 128 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMRYTE 187

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A +++ G+ ++ VDF D Y+  + EP V PS+FPNLL +GTSGIAVGMAT+IP 
Sbjct: 188 ARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATNIPP 247

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ EI +A  AL  NPEI+I+ L+E+++ PDFPTG  I  ++  ++E+Y+ GRG   +R
Sbjct: 248 HNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIF-NKAGLIEAYKTGRGSITMR 306

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++E+  G   I++TEIPY+V+K+ ++EKIA+ +  KRI  + D RDES  D   V+
Sbjct: 307 AKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIRVV 366

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++  P++++ +++ L+ ++T F  NM  L  G  P+++ L   L+ +L H+ +V  
Sbjct: 367 IDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGE-PKLLNLKECLQVYLDHQIDVTR 425

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F ++    R  IL+GL I   NID +I II+        +  +   FSL+E Q  A
Sbjct: 426 RRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQAKA 485

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L   ++  ELD + A   +  ++L+S ++    I  E++EVKE +    
Sbjct: 486 IVDMRLGRLTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAY---- 541

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
             G +R +         +   + +I ++ I + +S+  +I+          +   V +S 
Sbjct: 542 --GDKRRSEIRWDVM-SSINNEDLIPQKEIVITLSSNNYIKRIDLEEYREQRRGGVGVST 598

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID-LNHN 599
           +   + D ++  + A+T   +L+ + + K Y +    + SG     G  I  ++  +  N
Sbjct: 599 VKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTIQKN 658

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +V       Y+ +  L+ V+ +G        E     + GK  L +  ++ +  V  V
Sbjct: 659 EKVVKIICVTDYEESQSLITVTERGVIKKTNLKEYELIRKNGKYALSLLEDDHLIDVRVV 718

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             D  + +   N ++  F++  + EM R  +GV      D     V      +G      
Sbjct: 719 DQDEEIFIAASNSRINRFNVADVREMGRVARGVGGIRLSDDD-KVVSVSSSKDGAYIFSL 777

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + Y +          KR   G +      ++GK + +
Sbjct: 778 GAKGYGKLSLVESYRKTKRNAKGVITLNE-DKAGKLVYA 815



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 153/462 (33%), Gaps = 33/462 (7%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-- 345
           +L  A  +  L+    E+ + V  ++      +D    +   F LS+++ +  ++M +  
Sbjct: 435 DLARAHILEGLKICV-ENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQAKAIVDMRLGR 493

Query: 346 -LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM--QAIDRRVEILKGLLIAYLNIDE 402
              +        LD +      +R  +        +  + +    E       + +  D 
Sbjct: 494 LTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDV 553

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK--------LEEYQIKSELDNL 454
           + +I   +  P+  +V   +L+ N     ++L     ++        ++ YQ     D +
Sbjct: 554 MSSINNEDLIPQKEIV--ITLSSNNYIKRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVV 611

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +A       +     + +     EI       SK T +     T  +  +  K       
Sbjct: 612 VANTHADLLIFTDEAKIYRVRGHEIP-SGTKQSKGTPIVNIVPTIQKNEKVVKIICVTD- 669

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            E+    + ++ RG I+                AL   E D L         + I + ++
Sbjct: 670 YEESQSLITVTERGVIKKTNLKEYELIRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAAS 729

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           + +       ++         +   I L+ +  +V+         +  + +KG   +   
Sbjct: 730 NSRINRFNVADVREMGRVARGVGG-IRLSDDDKVVSVSSSKDGAYIFSLGAKGYGKLSLV 788

Query: 629 SEIIANTRKGKTFLKVSSE--EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-G 684
                  R  K  + ++ +   K+     V G + + ++ ++   +  S+  I  + R  
Sbjct: 789 ESYRKTKRNAKGVITLNEDKAGKLVYAAAVHGVEDLIIMTQSGIAIRISLRDINVIGRNA 848

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           KGV++ + K      V   KI +     D+  R   + E   
Sbjct: 849 KGVKIINLKGRSDQIVGVAKIYDE----DATDRELTKEEYIE 886


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/746 (36%), Positives = 429/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI+ AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES   
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELAAKAAIIREQLGNPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLVPAETVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  S+ G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LEDEASELIAASTSGYGFKTQAKQLDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLAELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  +LGKR   G L+P+G+ ++ K L
Sbjct: 711 LQKYLGKRASKGQLLPRGYQKANKLL 736


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 248/834 (29%), Positives = 400/834 (47%), Gaps = 110/834 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M +VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R +
Sbjct: 188 LGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E VG     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTNFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS---------- 422
           + + +     R  IL GL IA  NIDEII II+  +     K  +++R            
Sbjct: 366 TIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIK 425

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL ++L+ L  +E+ +++ +L +L  +  +  ++L S
Sbjct: 426 LVDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILAS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFASP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  GK Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK---GV 687
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +  + + +   GV
Sbjct: 658 KKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRII-KSRISDGV 716

Query: 688 RLQSYKDGGISDVICFKICEGLT------------------------------------- 710
           R           VI   + +G+                                      
Sbjct: 717 RGMKL--AKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVNLNA 774

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        +      + +  +     +  RGG G +      ++G  + 
Sbjct: 775 DSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 77/289 (26%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIR-- 531
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRS 652

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                 K  S    A+   E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRI 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L     +++  V                                        
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVNL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 NADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    D      +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSL 881



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A++ + IL ++ +G      A         G  I  +   +    +V         +L++
Sbjct: 781 ANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELML 840

Query: 617 VSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKV 656
           +++ G     +     I      G    K+  +EK+  V  +
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/769 (32%), Positives = 401/769 (52%), Gaps = 47/769 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E G+   ++ +KS+
Sbjct: 19  VQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKSS 78

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG++DGD  AA RYTEARM
Sbjct: 79  SIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +AE +L+ +D+D VDF+  Y++   EPVV PS FPNLL NG+SGIAVGM+T+IP HN+
Sbjct: 139 APIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A   LI+NP+ ++E L+EY+ GPDFPTG   +  + ++ ++Y+ GRG  RVRA +
Sbjct: 199 GEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGA-NIVGKNAVHKAYKTGRGRIRVRAEF 257

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            V+E G     IV+TE+PYQ  K+RLIE+IA+ +   +I  + D+RDES  D   V+   
Sbjct: 258 EVDEDGDN---IVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVEL 314

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R  +PD++   + +   +E+ F +    L  G+ P+V+ L   LKE+L HRREV+ RRS
Sbjct: 315 KRGANPDVVKNQL-LEHHLESTFGVINLALVDGQ-PRVLTLKETLKEYLDHRREVVRRRS 372

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF------------ 421
            + +   + R  IL+G L A  NID+++  IRN    D  K  +                
Sbjct: 373 EYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALRGEMTVEVDGEPLPTF 432

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             +E+Q + I+ ++L SL  +E  +IK E + +    ++++ +LN+  +    I  E+  
Sbjct: 433 DFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEILNNPDELDAVIKSELTA 492

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +K+ +        RRT+F E +        + +I +E + VV++   +I+          
Sbjct: 493 IKDEYDDE-----RRTSFIEDTGT---VTHEDLIAEEDVVVVVTEDDYIKRMPLDTFRAQ 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +     KEGD +     A T D +L  +  G+ Y L    +   S    G++  
Sbjct: 545 HRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSRTARGKSAV 604

Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            L++L+  ++I           ++   L + +  G        +       G    K+  
Sbjct: 605 NLLELDDGEEITAVVNTADIEDETDKYLTMATQNGYVKRTSVEKFQNILTTGIIATKLDE 664

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
           ++++  V    G H + +   +   + F    +  M R  +GVR    + D  +  V   
Sbjct: 665 DDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAMGRSARGVRGMKLEGDDELVGVAAV 724

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                   +      Y +  +        R G G +  K   R+G   +
Sbjct: 725 DEDRHNWVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNGPVCA 773



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 80/223 (35%), Gaps = 16/223 (7%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIR------SLKSHSVDLSALHFKEGDS 550
              +            + ++    + + +  G+++           +  + A    E D 
Sbjct: 608 ELDDGEEITAVVNTADIEDETDKYLTMATQNGYVKRTSVEKFQNILTTGIIATKLDEDDE 667

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L        +  ++L S DG A      ++ +       ++ +  L  + ++V     D 
Sbjct: 668 LADVEVTDGSHDLVLASRDGMAIRFDESDVRAMGRSARGVRGM-KLEGDDELVGVAAVDE 726

Query: 611 TCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVV 664
                +L V+  G     +       +R GK  + + + ++   V  +     GDH+ V+
Sbjct: 727 DRHNWVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNGPVCAMETVGYGDHLFVM 786

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKI 705
            E+ ++L   ++ I  + R   GV +    +G  ++ V  + +
Sbjct: 787 SESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVYNV 829


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/750 (36%), Positives = 428/750 (57%), Gaps = 25/750 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES     VRIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLI +LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           S + ++EGD L  A+   +T ++  L ++G+AY+     L S RG+GE +          
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGA 589

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-- 658
                   D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T   
Sbjct: 590 SFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQ 649

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWI 712
            D +  V     LL  +  ++PE+ +GKG +L            +  VI       L  +
Sbjct: 650 HDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LL 708

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            S  R+ + S  DL  +L  RG  G L+P+
Sbjct: 709 YSGERTMHLSFKDLEAYLDTRGSRGQLLPR 738


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 243/795 (30%), Positives = 404/795 (50%), Gaps = 58/795 (7%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             S      ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   PNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D
Sbjct: 67  GLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y
Sbjct: 187 AVGMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETY 245

Query: 244 RLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             G+G   +R    +E +          +++TE+PYQ  K+ LIE+IA+++  K++  + 
Sbjct: 246 LSGKGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIA 305

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   ++    R   P +++ ++F L+ ++T F  NM  L  G  P ++ L  
Sbjct: 306 DIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGE-PVILSLRK 364

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           +L+ +L  R E + +R+ + ++  + R  IL GLL+A   +DEII++IR   +    K  
Sbjct: 365 MLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNK 424

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     LT+ Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +    
Sbjct: 425 LQELHGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKIIDLKDILNKKERVFEITK 484

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+KE ++      +RRT   ++    +      +I  E   V+++  G+++ +  +
Sbjct: 485 IELNEIKEKYNT-----QRRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVN 536

Query: 537 SVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             + ++   +          + +K  +  +  D +LL S  G +Y LPA  +   S    
Sbjct: 537 EFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAK 596

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L+ +   + I +      +D    LL+++  G       S        G   + 
Sbjct: 597 GTPIVQLLPIPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIG 656

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG--- 696
           +   + +  V    +GD V +  +N   + F +   ++  + R  +GV+  + K G    
Sbjct: 657 LEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLV 716

Query: 697 ISDVICFKICE------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             DV+  ++ +                  G   + ++G    +        L KR G+G 
Sbjct: 717 SMDVLSTELADHVDKSEEDELQSESSESEGPWVLVASGSGLGKRVPMTQFRLQKRAGMGL 776

Query: 739 LVPKGFPRSGK-FLS 752
              K F + G   + 
Sbjct: 777 RAIK-FRKDGDELVG 790



 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 37/244 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                A  + L  +  + E   ++++  G+I+        K  +  L A+  ++GD+L  
Sbjct: 606 IPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              A + D +L+ S +G    + L    L         ++ + +L     +V+  V  + 
Sbjct: 666 VRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSM-NLKSGDSLVSMDVLSTE 724

Query: 612 ----------------------CKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SS 646
                                   +LV S  G    V  ++     R G     +K    
Sbjct: 725 LADHVDKSEEDELQSESSESEGPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKD 784

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICF 703
            +++  +  +  G+ + +V E   ++  S D+I + SR   GVR+Q   +G  +S+V+  
Sbjct: 785 GDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLV 844

Query: 704 KICE 707
              +
Sbjct: 845 PPEQ 848



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 24/156 (15%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHT----T------------------DRILLLS 567
           +R L   +  + +++ K GDSL       T                         +L+ S
Sbjct: 694 LRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESEGPWVLVAS 753

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G    +P       +  G  ++ +       ++V   V     +LL+VS +G      
Sbjct: 754 GSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSERGVIVRTS 813

Query: 628 ESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
             +I   +R   G    K+ + +K+  VV V  + +
Sbjct: 814 ADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 243/830 (29%), Positives = 383/830 (46%), Gaps = 114/830 (13%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   ++  +++   L+  YL YA+S I  RA+PD RDG KPVHRRI+++M ++ +    A
Sbjct: 1   MAPGDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + K AR+VG+V+G+ HPHGD SVY +LVR+AQ F     L+ GQGNFG++DGD  A+ RY
Sbjct: 61  YSKCARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+M   A  +L  +D+D VDF+  Y+E++ EPVV P++ PNLL NG  GIAVGMAT+I
Sbjct: 121 TEAKMAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+AL+D+P++S + LL+ + GPDFPTGG I+  R +   + R GRG   
Sbjct: 181 PPHNLREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIM-GRTAPRNALRDGRGSVI 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR +  +EE+ +    I++TE+P+QV K  LIE+IAE++  KR+  + D+RDES      
Sbjct: 240 VRGKASIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R    D+++  ++  + +++ F +NM  L+    P+ M L  +L+ +L  R EV
Sbjct: 300 IVIELKRDASGDVILNQLYRYTALQSSFGVNMLALN-HGRPEQMGLRKLLELFLDFREEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------- 418
           + RR  F +     R  +L GL +A  NIDE+I IIR+   P                  
Sbjct: 359 VVRRVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMM 418

Query: 419 ----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                            +  LT+ Q  AIL L L  L  L    I  E   L    +   
Sbjct: 419 ALVELIADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHL 478

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L+  K     I  ++  VK+ F        RRT   E    D     + +I +E + V
Sbjct: 479 TILSDRKNVLAIIREDLLLVKDQFGV-----DRRTLIGE---GDAEMEDEDLIPREDMVV 530

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +++ G+++                 S +  K+ D +     A T   +L  +T+GKAY 
Sbjct: 531 TVTHSGYVKRVALNAYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYK 590

Query: 575 LPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIV 626
           L    L  G  +  G+A   L+ +     I+                ++  +  G+    
Sbjct: 591 LKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRN 650

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-MSR- 683
           + S+     R GK  +K+   + M  V   T  D V +     + + F  D +     R 
Sbjct: 651 KLSDFATVNRAGKIAMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRD 710

Query: 684 GKGVRLQSYKDGG-------------------------------------ISDVICFKIC 706
             GVR    +DG                                        DV+  +  
Sbjct: 711 STGVRGIRLQDGDTVISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEAD 770

Query: 707 EGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +                       +      + +  +        RGG G
Sbjct: 771 DEEAGDAALSVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQG 820



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 82/292 (28%), Gaps = 76/292 (26%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHSV--- 538
                 G+       +   D       + E E        +  +  G +R  K       
Sbjct: 599 GNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATV 658

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------- 586
                 A+  ++GD +         D +LL +  G+A    A ++   +G          
Sbjct: 659 NRAGKIAMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIR 718

Query: 587 ---GEAIQLLIDL---------------------------NHNQDIVTAFVYDST----- 611
              G+ +  +  L                           +  +D+VT    D       
Sbjct: 719 LQDGDTVISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAA 778

Query: 612 -------------CKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVV 654
                          +L V+  G        E     R G+      L   +  ++    
Sbjct: 779 LSVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAF 838

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            V   D + +V +  +++   + Q+  + R  +GV +  ++ G    V+  +
Sbjct: 839 PVEESDDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTI--FRTGKDEKVVSVE 888


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 432/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 267/712 (37%), Positives = 423/712 (59%), Gaps = 24/712 (3%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL   A FKKSAR VG+V+GK HPHG  + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AE++L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSRYAEILLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP   P++ PN+L NGT+GIAVGMAT IP HN +E+  A +AL+DNP+ S
Sbjct: 121 YVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           ++ LL +I GPDFPT   I+  R+ I + YR GRG  R+RA W  EE       IV++ +
Sbjct: 181 LDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEESE-----IVISAL 235

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331
           P+Q   ++++E+IA  + A+   +++D+RDES  +   R+V+ P++  +D D LM  +F 
Sbjct: 236 PHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFA 295

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +D+E  + +NMN++ + R P V  L  IL EWL++RRE + RR ++R++ + +R+ IL+
Sbjct: 296 TTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q +AIL L+LR L +LEE +I+ E 
Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQAEAILELKLRHLARLEEVKIRGEQ 415

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  E++++ +LL S ++    I  EI    E +  +     RR+   E S   +A  +
Sbjct: 416 DALAQERDRLQTLLASERKLGTLIKEEIMADAETYGDA-----RRSPLQERSE-ARAMSE 469

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
              +  EP+T+V+S  GW+RS K H +D S L++K GD+ + A    +   ++ + + G+
Sbjct: 470 HDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGR 529

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   S++
Sbjct: 530 SYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDL 589

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKGVRL 689
           +A  R GK  L +    K+   +++ GD   +  + E  ++L+F +  +P++S+GKG ++
Sbjct: 590 VACNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKI 649

Query: 690 QSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
            S         +  +  ++       LT +    R              +RG
Sbjct: 650 VSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHVGKRKLVMKPAGFAEVPRERG 700


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 433/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 247/834 (29%), Positives = 400/834 (47%), Gaps = 110/834 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+  V++   ++  YL YA+S I  RAIPD+RDG KPVHRRII++M E G      ++KS
Sbjct: 8   NLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YDSLVR+ Q F  R PL+ GQGNFG++DGD+AAA RYTE+R
Sbjct: 68  ARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++VA  +++ +D+  V F   Y+  + EP V P+ FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A    IDN +I I  LLE + GPDFPTG +I+     I  +Y  GRG   +R +
Sbjct: 188 LGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +G     I++TEIPY V K+RL+EKIAE++  KRI  + D+RDES ++   +   
Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +  ++++  I+  + ++T F + M  L    +P+VM L  ++  +++ R  V+  R
Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTNFGVIMLAL-KDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS---------- 422
           + + +     R  IL GL IA  NIDEII II+  +     K  ++ R            
Sbjct: 366 TIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLIK 425

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL ++L+ L  +E+ +++ +L +L  E  +  ++L+S
Sbjct: 426 LVDDKVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILDS 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    +  E+ +VKE F+        R T  E    D+    + +I++E + V ++  
Sbjct: 486 RTRLLEILKEELIKVKEEFAVP------RLTAIEFGEFDQDI--EDLIQREEMVVTVTLG 537

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+          K      S L  ++ D         T   +L  S  GK Y+L    
Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYK 597

Query: 580 LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEI 631
           L   + +G G  +  ++ L  N+ I                 ++  ++KGN    +  + 
Sbjct: 598 LPLSNPQGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDF 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK---GV 687
                 GK  +++  ++K+  V     D H+ +  +  K L F ++ +  + + +   GV
Sbjct: 658 KKIQLNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRII-KSRISDGV 716

Query: 688 RLQSYKDGGISDVICFKICEGLT------------------------------------- 710
           R           VI   + +G+                                      
Sbjct: 717 RGMKL--AKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEEFNLEALGVHLNA 774

Query: 711 ------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                        +      + +  +     +  RGG G +      ++G  + 
Sbjct: 775 DSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVG 828



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 76/289 (26%), Gaps = 64/289 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSL 533
           ++  K   S     GR       +   +  T    + E +        +  + +G IR  
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRS 652

Query: 534 KSHSVDLSALHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                    L+ K      E D L         + ILL +  GKA   P  +L   +   
Sbjct: 653 DLLDFKKIQLNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRI 712

Query: 588 EAIQLLIDLNHNQDIVTAFVY--------------------------------------- 608
                 + L     +++  V                                        
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEEFNLEALGVHL 772

Query: 609 ---------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657
                    +S   +L V+  G              R G   + +   +K  LVV V   
Sbjct: 773 NADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
              D + ++  + KL+   ++ +    R   GV L    D      +  
Sbjct: 833 KMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSL 881



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKA 572
             E     + +     ++  K    +L AL      DS+     A++ + IL ++ +G  
Sbjct: 739 TKEDRDAYLTVPWEKRLKIAKGEEFNLEALGVHLNADSILEM--ANSEEFILTVTENGFG 796

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE-- 630
               A         G  I  +   +    +V         +L+++++ G     +     
Sbjct: 797 KRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRCKLESVR 856

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I      G    K+  +EK+  V  +  
Sbjct: 857 ITGRNTSGVILFKLDDDEKVVSVSLIAE 884


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 289/765 (37%), Positives = 430/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 2   DDNTSDLFAGSDAPEADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIAS 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + S+   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+D
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLD 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LTE Q + IL +RLR L +LE+ +I+ EL++L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLTERQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GDSL  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + +         + V      VA +    +LL+F ID++  +   G+GV L +  D   +
Sbjct: 653 MTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKALSGGGRGVTLMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 247/818 (30%), Positives = 405/818 (49%), Gaps = 80/818 (9%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + + ++ N   +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM 
Sbjct: 1   MADPTDPNG--DSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 58

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E+GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG++D
Sbjct: 59  ELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVD 118

Query: 123 GDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           GD  AA RYTE+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++
Sbjct: 119 GDPPAAMRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGST 178

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  LALI +P++   +L+  I GPDFPTGG I+  R  I E
Sbjct: 179 GIAVGMATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQIL-GRRGIRE 237

Query: 242 SYRLGRGGFRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           +Y  GRG   +R    VE +          I++TE+P+Q  K+ LIE+IAEL+  K++  
Sbjct: 238 TYTTGRGSVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDG 297

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   ++    R   P +++ ++F L+ ++  F   M  L  G  P ++ L
Sbjct: 298 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGE-PVLLTL 356

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK 414
             +L+ +L  R E + RR+ F ++  + R  IL GLLIA  ++D IIA+IR        +
Sbjct: 357 RKMLEVFLEFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASAR 416

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +V++F LTE Q DAIL ++LR L  LE  +I+ E ++LLA+      +L   ++ +  
Sbjct: 417 SELVAQFGLTEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARRERVFGI 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+  ++  +        RRT   ++    +      +I  E   V+++  G+++ + 
Sbjct: 477 ITDELGAIRNRYLSP-----RRTEILDLEGGLEDI---DLIANERSVVLLTETGYLKRMP 528

Query: 535 SHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
               + ++   +          +++K+ +  +  D +LL S  G  Y +PA  +   S  
Sbjct: 529 VSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDRGVVYAVPAYRVPICSRA 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  L+ +   + I +      +     L++++S G       S        G   
Sbjct: 589 AKGTPIVQLLPIPREEQITSLLAVSAFSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIA 648

Query: 642 LKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG- 696
           + +   + ++ V   + GD V +       + F +  +++  + R  +GVR  + + G  
Sbjct: 649 ISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQ 708

Query: 697 ---------------------------------ISDVIC--FKICEGLTWIDSAGRSYNR 721
                                              +V      + EG   + ++     +
Sbjct: 709 LVSMDVLSAELADRVASSSDSAGLEESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGK 768

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSG------KFLSS 753
                   L KR G+G    K F R G      K L +
Sbjct: 769 RVPVDQFRLQKRAGMGLRAIK-FRRDGDTLVGLKVLGA 805



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 50/266 (18%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +   +E + V++++ G+I+  +  +        L A+  ++GD L+ 
Sbjct: 600 IPREEQITSLLAVSAFSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIAISLEDGDDLRW 659

Query: 554 ALHAHTTDRILLLSTDG----------------------KAYTLPAG-----------NL 580
              A   D +L+ S  G                      +A  L AG            L
Sbjct: 660 VRLALPGDSVLIGSLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAEL 719

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANT 635
                       L +    + +      +         +LV S+ G    V   +     
Sbjct: 720 ADRVASSSDSAGLEESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQK 779

Query: 636 RKGKTFLKVS---SEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R G     +      + +  + V   G+ V +V E   ++    D IP+ SR   GVRLQ
Sbjct: 780 RAGMGLRAIKFRRDGDTLVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQ 839

Query: 691 SYKDGG-ISDVICFKICEGLTWIDSA 715
               G  + +V+          +D+A
Sbjct: 840 RLDAGDRLVEVVLVPPAASEDELDAA 865


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 247/753 (32%), Positives = 378/753 (50%), Gaps = 61/753 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G +    S  +  E    ++L   +   YL YA+S I  RA+PD+RDG KPVHRRI+ +M
Sbjct: 9   GNNGTGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSM 68

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G      +KKSAR+VG+V+GK HPHGD ++YD++VR+AQ F  R PLI GQGNFG++
Sbjct: 69  QENGFTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSM 128

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTEAR+ + A  +L+G+DED VDF   Y+E   EP V P+ FPNLL NG +
Sbjct: 129 DGDPPAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGAN 188

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP+HN  E+ +A LALI  PE S+E L++ + GPDFPTG +I+  R  I  
Sbjct: 189 GIAVGMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALIL-GRAGIRS 247

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RAR  +EE+  G   I ++EIPYQV K+ LIE+IAEL+ AK+I  + D+
Sbjct: 248 AFETGRGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDL 307

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    +   P++++  ++  ++++T F +N   L     PQ M L   L
Sbjct: 308 RDESDRSGLRIVIELKKDATPEVVLNHLYRYTNLQTSFAVNFLAL-HQGRPQQMGLRQAL 366

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
           + ++  R EV+ RRS FR+     R  +L GL IA  NIDE+I +IR             
Sbjct: 367 QAFIDFREEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALM 426

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        LTE Q   IL LRL+ L  LE  +I +ELD 
Sbjct: 427 ARDWPVADVGPLLALVDDSGNIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELDE 486

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + A   ++  +L S  ++   +A E+R V+   +             E+         ++
Sbjct: 487 VAARIRELLEILASHPRRMELMADELRAVRAQIASP--------RLSEIVDGLADQDDES 538

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           ++E   + V ++  G+++                 S+ + ++ D +  + +AHT   +L 
Sbjct: 539 LVEPGLMVVTLTRDGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLF 598

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            ++ G A+      L        G +++ L+ L   + +                 L+  
Sbjct: 599 FTSRGMAFREKVWKLPEAGPTARGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFA 658

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--S 674
           +S+GN      S+       G   +K+   + +  V     GD+V +   + + + F   
Sbjct: 659 TSEGNVRRNRLSDFKNVRASGLIAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTAD 718

Query: 675 IDQIPEM-SR-GKGVRLQSYKDGGISDVICFKI 705
           +D +     R   GVR      G    VI   +
Sbjct: 719 VDTLRVFAGRDSTGVRGIKLATG--DQVIALSV 749



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLL 671
           V+  G        E     R G+    ++   +    V  T     GD V +V +N +L+
Sbjct: 820 VTDGGFGKRSSAYEYRVTGRGGQGITNITLSSRTGRSVVATFPVRMGDDVMLVTDNGRLI 879

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVI-CFKICE 707
               DQ+    R   GV     +      V  CF + E
Sbjct: 880 RLPADQVRVTGRQAMGV--MMLRLNEAEKVTSCFTVVE 915


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/736 (31%), Positives = 395/736 (53%), Gaps = 24/736 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+
Sbjct: 10  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGD 69

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+Y+ +VR+AQP+   Y LI G GN+G+ D D AAA RYTEAR++++A 
Sbjct: 70  VMGNYHPHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAM 129

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F+D ++    EPVV PS+FPNLL NG SGI+ G AT IP+HN++E+ +
Sbjct: 130 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVID 189

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A++D PE+++E+L+  I GPDFPTGGII+   E I ++Y  G+G   VRA+  +E V
Sbjct: 190 ACVAMMDQPEMTVEQLMGIIKGPDFPTGGIIM-GEEGIKDAYTSGKGRIYVRAKTSIESV 248

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   I+VTEIPYQV KSRL+  I  + + K++  + ++RDES  D   ++    +  D
Sbjct: 249 RGGRQQIIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLKKDAD 308

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              ++  +   +D++  +  NM  +     P+ + +  +L+ ++ H+++V+  R+ + ++
Sbjct: 309 AQGILAYLLKKTDLQVTYNFNMVAIVNK-TPKQLGIREMLQAYIDHQKDVVIHRTQYDLE 367

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  +L+GL+ A   +DEII  I   +N    +  +V +++ TE Q DAIL L+L  
Sbjct: 368 KAEDRAHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEKYAFTERQADAILTLQLYR 427

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE   ++ EL++++ +   + S+L S K+  N I  E+ E+++ +         R +
Sbjct: 428 LTNLEVTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDKYGID------RRS 481

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-----LHFKEGDSLKI 553
             +    +     + M+  E + V +S  G+I+ +   S   S         KEGD ++ 
Sbjct: 482 EIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSYTRSGGELHTTGLKEGDFVRH 541

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
            L  +T D +L+ +  G+ + LP   +     + +G AI  +I ++    IV        
Sbjct: 542 LLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVNVIPVKNF 601

Query: 609 -DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGE 666
            +S   L+ V+ KG     E  E +          KV   +++  V V  +   + +V +
Sbjct: 602 EESGKSLVFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEVSESNKDLLLVTK 661

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F  D++  M R   GVR    KDG       +   +    +  + R Y +    
Sbjct: 662 QGMSIRFREDEVNPMGRAAGGVRGIQLKDGDEVISAEWIFGDEGELLVISDRGYAKRTLV 721

Query: 726 LLGWLGKRGGVGSLVP 741
               L  RGG G L  
Sbjct: 722 FDYPLQARGGKGILTF 737


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 262/755 (34%), Positives = 408/755 (54%), Gaps = 27/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL    ++KKS
Sbjct: 9   KIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKS 68

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE +GK HPHGD ++YD++VRLAQ F  RY L+ GQGNFG+IDGDSAAA RYTEAR
Sbjct: 69  ARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEAR 128

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++ EL+LQ +DED V++   ++E   EP+V PS+ PNLL NG++GIAVGMAT++P HN
Sbjct: 129 LQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHN 188

Query: 196 VQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A   LI+   +    +L+  + GPDFPTGG+I+  ++ I+++YR GRG   V+ 
Sbjct: 189 LGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRLVVQG 247

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VEE  RG   +V+TEIPY V K+ +IE IA  +  K I  + DIRDES      V+ 
Sbjct: 248 LVHVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVL 307

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             +R +DPDL++  ++  S ++  F +    L  GR  + + L  +L  +L HRR V+ R
Sbjct: 308 EVSRDVDPDLVIRQLYRRSQLQNTFGVINLALVDGRPVE-LSLTDMLNVFLGHRRTVVRR 366

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+GL+ A   ID +IA+IR  D     K  +V+    +E Q  AI
Sbjct: 367 RTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAI 426

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L+ L  LE  ++  E   LLA+ ++  S+L+S K     I  E+  +K  +     
Sbjct: 427 LDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGD--- 483

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   +    D     + +I +E I V++S  G++R                    
Sbjct: 484 --DRRTKIVDRVGQD--CSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGA 539

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDI 602
             +E D + +   + T D I L +T G+ + +    +   R G G+ I   I L +++ +
Sbjct: 540 RLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERV 599

Query: 603 VTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           V+        +  L  ++ +G A  +  SE+   TR G+  + +   +++  ++  +G D
Sbjct: 600 VSMKTRRGQESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMD 659

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V    + L  S D+   M R  +GV+    KDG    +    + E    I  +   
Sbjct: 660 DLLLVSAMGQALRVSEDEFRPMGRSARGVKAMRLKDGDRI-ISGEVVTEDRRPILVSETG 718

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  N     +  RGG G  V     R+G   ++
Sbjct: 719 IGKRTNFEDFTVHHRGGGGMKVMSINSRTGLLAAA 753



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 15/200 (7%)

Query: 522 VVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             ++ RG  + L S  +D         +   EGD +   L     D +LL+S  G+A  +
Sbjct: 614 FFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRV 673

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
                         ++ +  L     I++  V     + ++VS  G        +   + 
Sbjct: 674 SEDEFRPMGRSARGVKAM-RLKDGDRIISGEVVTEDRRPILVSETGIGKRTNFEDFTVHH 732

Query: 636 RKGKT--FLKVSSEEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG----V 687
           R G     + ++S   +          D + V+    +++  +  +I  + R       V
Sbjct: 733 RGGGGMKVMSINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAGSIVV 792

Query: 688 RLQSYKDGGISDVICFKICE 707
           RL          V+     +
Sbjct: 793 RLDGGDSVVDLSVVNMDGED 812


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 392/846 (46%), Gaps = 104/846 (12%)

Query: 1   MGVD-NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D +  ++     E    + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++
Sbjct: 1   MADDIDTIDTPVPGGEEHTRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A +E G   G  F+KSA+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG
Sbjct: 61  ASNEGGFVAGRPFRKSAKIVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++D D  A+ RYTEAR+ +VA  +L  +D+D VDF D Y+    EP V P++FPNLL NG
Sbjct: 121 SMDPDPPASMRYTEARLARVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVGMAT+IP HN+ E+ +   A +DNP I+ E+L E I GPDFPT  +I+  +   
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLIL-GKTGA 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  GRG    RAR  +EE       IV+T IP+QV KS L+EKIAE    KRI  + 
Sbjct: 240 RAAYTTGRGSILQRARHEIEERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES+     V+    R    ++++  I+  +  ++ FP NM  +S G  P+V+ L  
Sbjct: 300 DIRDESSRQGVRVVVDLKRDASAEVVLNQIWRYTPAQSSFPANMLAIS-GGRPEVLTLRE 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV- 418
            ++ ++  R EV+ RR+ + +     R  IL GL++A  N+DE++A+IR+   P      
Sbjct: 359 FIQAFITFREEVITRRTKYELNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARAR 418

Query: 419 -----------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                          + L+E QV AIL+LRL  L  L   +I  
Sbjct: 419 LLAKEWPIGDIAQYIALVEAIEPSDEQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGD 478

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           EL  L    E+  S+L    + +  +  E+ E++  ++             E++ A    
Sbjct: 479 ELKLLSLSIEEYLSILADRVKLYGVMRGELEEIRAAYATP--------RVSEIAPAWDGI 530

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +IE+E + V +++ G+I+                 S +  K+ D++       T +
Sbjct: 531 DDEDLIEREEMVVTVTHGGYIKRTPLDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHN 590

Query: 562 RILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------K 613
            +L  +  G+ Y +    L  G  +  G  +  L+ L  ++ +                 
Sbjct: 591 PVLFFTNTGRVYRMKVWKLPEGGPQTKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLN 650

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGD-HVAVVGENRKL 670
           ++  + +G                GK  +     S +++  V  +T D  + +  ++ K 
Sbjct: 651 IVFATEQGMVRRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKA 710

Query: 671 LIFSIDQIPEM-SR-GKGVRLQSYKDG-GISDVICFKICEGLT----------------- 710
           + FS     E  SR G GVR    K+G  +  +      E  T                 
Sbjct: 711 IRFSATDARETKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWKNNEN 770

Query: 711 ------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-----RS 747
                              +    R Y +  +        RGG+G     G P     R+
Sbjct: 771 DYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNI-GEPSSNPDRN 829

Query: 748 GKFLSS 753
           G  ++S
Sbjct: 830 GTVVAS 835



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 91/321 (28%), Gaps = 73/321 (22%)

Query: 465 LNSGKQQWNQIA---CEIREVKEIFSKSTDLGRRRTTFCEV----------------SRA 505
           L   ++  N +A    E    K     +T+ G  R    +                    
Sbjct: 627 LGDDERVTNVLALPEDEAEWAKLNIVFATEQGMVRRNSMDAFTNVPSNGKYAMGFVEDSG 686

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
           D+    + + E + I +   +   IR              + +  +  KEG  +      
Sbjct: 687 DRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLKEGQKVVSMAV- 745

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                   L    +   +    L +           +D    ++     + ++   +L +
Sbjct: 746 --------LDAGERDTEVREAYLRAAEWKNNENDYTLDAEKVEE-----MAEAEEFILTL 792

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKV----TGDHVAVVGENRK 669
           +S+G   I    E     R G     +       ++   VV       G  + +V +  K
Sbjct: 793 TSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVASFPVKHGSQLMLVTDQAK 852

Query: 670 LLIFSIDQIPEM--------------SRG-KGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           L+   I+    +               RG  GVR+ +   G            G   ID 
Sbjct: 853 LIRLPIN-FRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQIV--------GAALIDE 903

Query: 715 AGRSYNRSENDLLGWLGKRGG 735
                N++E  +   +  RGG
Sbjct: 904 TEEPENQAEELVQDEIAARGG 924


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 250/693 (36%), Positives = 376/693 (54%), Gaps = 61/693 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 239

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 240 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 300 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 359 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 418

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 419 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  V+E F        RRT   E++        + +I +E
Sbjct: 479 AELLRILGSADRLMEVIREELELVREQFGDK-----RRT---EITANSADINLEDLITQE 530

Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ G
Sbjct: 531 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRG 590

Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
           + Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G    
Sbjct: 591 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              +E       GK  +K+   +++  V   +G
Sbjct: 651 TVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 683



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 533 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 592

Query: 671 LIFSIDQIPEMSRG-KG---VRLQSYKDGGISDVI--CFKICEGLTWIDSAGRSYNRSE 723
               + Q+PE +RG +G   V L   +       I    +  EG+    +      +  
Sbjct: 593 YSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 651


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 432/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 288/766 (37%), Positives = 430/766 (56%), Gaps = 42/766 (5%)

Query: 6   ISNSNTLVE------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           ++   TL +      E+ +++ L    E  YL YA+S +K RA+PD+ DG KPV RRI++
Sbjct: 1   MTEQPTLFDQLPPDDEHKESLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILY 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+E+ LD  A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG
Sbjct: 61  AMNELRLDSEAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFG 120

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + DGD AAA RYTEAR+T +AEL+L+ +D+  V+F+D Y+    EP + P++ P  L NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT IPSHN+ E+  AA+A+I NP IS  +L+E I GPDFP GG I+ +  +I
Sbjct: 181 ASGIAVGMATEIPSHNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTI 240

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---------- 289
            E Y  GRG  +VRARW +EE+ RG W  VV+E+P      +++E+I E+          
Sbjct: 241 SEIYENGRGSVKVRARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKK 300

Query: 290 --------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
                   +  + + +L+ IRDE++ D  VRIVL PK++  +PD  M+ +   + +E   
Sbjct: 301 ALSAEQVALRQQFLGILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNA 360

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+N+ ++ +   P+   L  I+ EW+  R   + RR+++R++ +D R+ IL+G     LN
Sbjct: 361 PVNLVMIGIDGRPRQKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLN 420

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ID +I IIR  D+PK  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EK+
Sbjct: 421 IDAVIHIIRESDEPKAALIDAFQLSERQADDILEIRLRQLARLEKIRIEQELAELRKEKK 480

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  LL++       I  EI   ++ +  +      R T  E +    A   +  I  EP
Sbjct: 481 GLHDLLDNPSSMKRLIIREIEADRKKYGDA------RRTLIEEAERATA---EQKIVDEP 531

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +TV+IS  GW+R    H ++LSA+ FK GD+L  +    +TD +L  S+ G+ YT+P   
Sbjct: 532 VTVIISQNGWVRQRTGHGLNLSAITFKSGDNLFSSFECRSTDFLLAFSSTGRIYTIPVHQ 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           L  GRG G  I    ++  ++ IV   V      +L+    G  F  + S++++  R GK
Sbjct: 592 LPGGRGDGMPITTFAEIGIDETIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGK 651

Query: 640 TFLKVSSEEKMK--LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +F+ +   E +   LV+      + V+ E  + L+F   ++  +S  G GV L     G 
Sbjct: 652 SFISLEDGETLLPPLVIPEASKSIGVLSEKGRFLLFDATELRVLSSGGHGVILMGLDKGE 711

Query: 697 ISDVICFKICEGLTWIDSAGR----SYNRSENDLLGWLGKRGGVGS 738
                      G   I  A          S N +  + GKR   G 
Sbjct: 712 KIRATLPVDDNGCLVICMAKNDNRYEVRISGNQIETYTGKRARKGK 757


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 289/765 (37%), Positives = 431/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 2   DDNTSDLFAGSDAPEADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIAS 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + S+   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+D
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLD 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GDSL  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + +         + V      VA +    +LL+F ID++  +   G+GV L +  D   +
Sbjct: 653 MTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +  AGR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGAGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/737 (33%), Positives = 388/737 (52%), Gaps = 63/737 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + E G     +++K A  V
Sbjct: 27  ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKSYRKCATAV 86

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++DGD  AAYRYTE+R+ + 
Sbjct: 87  GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 146

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  GIAVGMAT IP HN+ E+
Sbjct: 147 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI+ P++S E+L+EYI  PDFPTGG+I+  R    ++Y  GRG   +RA+  +E
Sbjct: 207 IDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRIE 265

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++DES      V+    R 
Sbjct: 266 EIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQDESDRSGVRVVVELKRD 325

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  +F  + M+  F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 326 ATAEVVLNQLFRFTPMQVSFGCNMLALN-GGRPEQLTLRAFLTAFLDFREDVVARRTAYL 384

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 385 LRKARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMTRRWPAHEIAPYIQLIDD 444

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 445 PTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAKKIKEYLEILGSRER 504

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+  VKE F+       RRT   E++        + +IE+E + V ++  G+I
Sbjct: 505 IMEIITNEMIAVKEQFAVP-----RRT---EIADWAGDMDDEDLIEREDMVVTVTAGGYI 556

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     +S    KE D +     A+T  ++L  +T+G AY L    L  
Sbjct: 557 KRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFFTTEGMAYKLKCWRLPQ 616

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     +      D         +++  +SKG+      S+    
Sbjct: 617 GGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNV 676

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVR 688
            R GK  +K   E++    +   +    D + +V ++ + + F +  +    SR   GVR
Sbjct: 677 MRNGKIAMKFEGEDENTRLINARICSEDDDIMLVTDSGRAIRFPVPDVRVFNSRNSTGVR 736

Query: 689 LQSYKDGGISDVICFKI 705
                +G   +V+   +
Sbjct: 737 GVRLLNG--DEVVSMSV 751



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 77/271 (28%), Gaps = 65/271 (23%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
           V+        +   +   I    +++G +R  +             A+ F+  D     +
Sbjct: 638 VAAIMPVDRDEDEWDDLQIVFA-TSKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLI 696

Query: 556 ---HAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                   D I+L++  G+A   P  ++    S    G     L++ +    +     ++
Sbjct: 697 NARICSEDDDIMLVTDSGRAIRFPVPDVRVFNSRNSTGVRGVRLLNGDEVVSMSVIRHFE 756

Query: 610 STCK-----------------------------------------------LLVVSSKGN 622
           +                                                  +L +++KG 
Sbjct: 757 AESDERASYLKMRRAMAGLADDAETSDEEEGNADSRLSQERYAEMTAAENLILTITAKGL 816

Query: 623 AFIVEESEIIANTRKGKTFLK----VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
             +    +     R G         +   E +       GD + +     + +   +D I
Sbjct: 817 GKLSSSHDYPIRGRGGMGVTAWEKSMRGGEIVASFPVEKGDQIMLATSTGQSIRVPVDGI 876

Query: 679 PEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
              SRG  GVR+ + + G     + +   +G
Sbjct: 877 SFRSRGAGGVRVFNTRAGETVVSVAWIADQG 907


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 256/808 (31%), Positives = 417/808 (51%), Gaps = 75/808 (9%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N    +++  V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+  
Sbjct: 2   ENLFENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGDSAAA
Sbjct: 62  KSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT +AE +L+ +D+D VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H++ E+ +  L L+D+   S+E+++  I GPDFPTGG+I   ++ I+++YR GRG
Sbjct: 182 TNIPPHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIF-GKKGIIDAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  +E+       I++ E+PYQ  K+RL+E+IA L+  K I  + ++RDES  +
Sbjct: 241 RVKIRAKTHIEQ-KSNKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + ME  F + M  +     P++  L  +LK +L HR
Sbjct: 300 GIRVVIELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKE-PKIFTLIELLKLFLNHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+I +I+        +  +V++FSL+E
Sbjct: 359 KTVIIRRTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQFSLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I +EL  +LAE E++D++L S       I  E+ E+K  
Sbjct: 419 IQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAILKSETLIEQIIKDELIEIKNK 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+             E+         + +I  E + V I++RG+I+          K   
Sbjct: 479 FNCP--------RITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRVPSKTYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++    +   D ++ ++  G+ Y L    +   S    G+A+  LID
Sbjct: 531 KGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSRTAKGKAVVNLID 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +++   L   +  G       SE       G   +K+  ++++  
Sbjct: 591 LQADEKIMAIIPTTDFNNNKSLCFFTKNGIVKRTNLSEYQNIRSTGIKAIKLDDDDEVVT 650

Query: 653 VVKV----------------------------------------------TGDHVAVVGE 666
            +                                                 G  + VV +
Sbjct: 651 ALIAERDINENLSNEKDLKSNDEIFGDEDELDSNDEILENENSENENSQEDGTKIIVVTQ 710

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV-ICFKICEGLTWIDSAGRSYNRSEN 724
               + F +  + E+ R  +GV    +K+     V       +    +  +     +   
Sbjct: 711 KGMCIKFMLSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILSVSSNGIGKRTA 770

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L KRGG G +  K   ++G+ + 
Sbjct: 771 AGEYRLTKRGGKGVICMKLTKKTGELIG 798



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSK 620
           +I++++  G        N+         +  +     +  +V A V      ++L VSS 
Sbjct: 704 KIIVVTQKGMCIKFMLSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILSVSSN 763

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           G        E     R GK  + +       E + +V+    + +  +  + K++   + 
Sbjct: 764 GIGKRTAAGEYRLTKRGGKGVICMKLTKKTGELIGVVIVDENEDLMALTTSGKMIRVDMQ 823

Query: 677 QIPEMSRGK-GVRLQSYKDGGISDVIC 702
            I +  R   GV + +     +  + C
Sbjct: 824 SIRKAGRNTSGVIVVNVDGDEVVSIAC 850



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 43/263 (16%)

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK--IDSLLNSGKQQ 471
           K  +V R +L+E Q              ++  ++  + + + A   +  I+  L++ K  
Sbjct: 617 KNGIVKRTNLSEYQNI--------RSTGIKAIKLDDDDEVVTALIAERDINENLSNEK-- 666

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG--- 528
                 +++   EIF    +L             ++ +  +   E     +V++ +G   
Sbjct: 667 ------DLKSNDEIFGDEDELDSNDEILE-----NENSENENSQEDGTKIIVVTQKGMCI 715

Query: 529 -----WIRSLKSHSVDLSALHFKEGDS--LKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
                 +R +   S  ++A+ FKE D   +  A+       IL +S++G      AG   
Sbjct: 716 KFMLSNVREIGRVSRGVTAIKFKEKDDKVVGAAVLQSDEQEILSVSSNGIGKRTAAGEYR 775

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             +  G+ +  +       +++   + D    L+ +++ G    V   ++ +  + G+  
Sbjct: 776 LTKRGGKGVICMKLTKKTGELIGVVIVDENEDLMALTTSGKMIRV---DMQSIRKAGR-- 830

Query: 642 LKVSSEEKMKLVVKVTGDHVAVV 664
                     +VV V GD V  +
Sbjct: 831 -----NTSGVIVVNVDGDEVVSI 848


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 390/761 (51%), Gaps = 31/761 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN     L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 3   ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + LI G GN+G+ D D AAA RYTEA
Sbjct: 63  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +++  V F+D ++    EPVV P++FPNLL NG SGI+ G AT IP H
Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +AL++ PE+++E++  ++ GPDFPTGGII+   E I E+Y  G+G   +R+
Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGGIIM-GEEGIREAYETGKGRIYLRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 242 KTEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +   +D++  +  NM  +     P+ + L  +L+ ++AH+REV+  
Sbjct: 302 ELKKDADAQGILAYLLKKTDLQVTYNFNMVAIVNKA-PRQLGLKAMLEAYIAHQREVVTY 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++ ++ R  +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q DAI
Sbjct: 361 RTQYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ EL+++  +   +  +L S K+    I  E+ E+++ +     
Sbjct: 421 LTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDKYGID-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFK 546
               R +  +    +     + ++ +E + V IS  G+I+            +      K
Sbjct: 479 ----RRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGVK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           EGD +K  L   T   +L+ +  G+ + LP   +     + +G AI  +I L     IV+
Sbjct: 535 EGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVS 594

Query: 605 AFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658
                    +    L+ V+  G     E  E            KV   +++  V V    
Sbjct: 595 VIPVKSFDENPELSLVFVTKNGQVKRTELKEYEKKRSGAVAACKVGDGDEVLSVTVSRNN 654

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + ++ +    + F+ D++  M R   GVR  + KD        +   E    +  +  
Sbjct: 655 QEILLLTKQGMAIRFAEDEVNPMGRVSAGVRGINLKDDDEVVSALWVEGEEGEVLVVSDL 714

Query: 718 SYNRSENDLLGWLGKRGGVGSLVP------KGFPRSGKFLS 752
           +Y +    L   +  RGG G          +  P   + + 
Sbjct: 715 AYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVG 755


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/795 (30%), Positives = 403/795 (50%), Gaps = 58/795 (7%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             S      ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+
Sbjct: 7   PNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYEL 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG++D D
Sbjct: 67  GLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDND 126

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG+SGI
Sbjct: 127 PPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+ +  +ALI NPE+    L+  I GPDFPTGG I+  R  I E+Y
Sbjct: 187 AVGMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQIL-GRSGIKETY 245

Query: 244 RLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             GRG   +R    +E +          +++TE+PYQ  K+ LIE+IA+++  K++  + 
Sbjct: 246 LSGRGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIA 305

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   ++    R   P +++ ++F L+ ++T F  NM  L  G  P ++ L  
Sbjct: 306 DIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGE-PVILSLRK 364

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416
           +L+ +L  R E + +R+ + ++  + R  IL GLL+A   +DEII++IR   +    K  
Sbjct: 365 MLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNK 424

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +     LT+ Q DAIL ++LR L  LE  +I+ E ++L+ +   +  +LN  ++ +    
Sbjct: 425 LQELHGLTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKITDLKDILNKKERVFEITK 484

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+KE ++      +RRT   ++    +      +I  E   V+++  G+++ +  +
Sbjct: 485 IELNEIKEKYNT-----QRRTEILDLGGGLEDI---DLIANERSVVLLTETGYLKRMPVN 536

Query: 537 SVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
             + ++   +          + +K  +  +  D +LL S  G +Y LPA  +   S    
Sbjct: 537 EFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYRVPQCSRTAK 596

Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L+ +   + I +      +D    LL+++  G       S        G   + 
Sbjct: 597 GTPIVQLLPIPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIG 656

Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG--- 696
           +   + +  V    +GD V +  +N   + F +   ++  + R  +GV+  + K G    
Sbjct: 657 LEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLV 716

Query: 697 ISDVICFKICE------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             DV+  ++ +                  G   + ++     +        L KR G+G 
Sbjct: 717 SMDVLSTELADHVDKSEEDELHSESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGL 776

Query: 739 LVPKGFPRSGK-FLS 752
              K F + G   + 
Sbjct: 777 RAIK-FRKDGDELVG 790



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 93/244 (38%), Gaps = 37/244 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
                A  + L  +  + E   ++++  G+I+        K  +  L A+  ++GD+L  
Sbjct: 606 IPREEAITSLLSVSSFDDENYLLMLTRGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              A + D +L+ S +G    + L    L         ++ + +L     +V+  V  + 
Sbjct: 666 VRLAESGDSVLIGSKNGMTIHFRLNDSELRPLGRSARGVKSM-NLKSGDSLVSMDVLSTE 724

Query: 612 ----------------------CKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKV-SS 646
                                   +LV S+ G    V  ++     R G     +K    
Sbjct: 725 LADHVDKSEEDELHSESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKD 784

Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICF 703
            +++  +  +  G+ + +V E   ++  S D+I + SR   GVR+Q   +G  +S+V+  
Sbjct: 785 GDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLV 844

Query: 704 KICE 707
              +
Sbjct: 845 PPEQ 848



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 24/156 (15%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHT----T------------------DRILLLS 567
           +R L   +  + +++ K GDSL       T                         +L+ S
Sbjct: 694 LRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESEGPWVLVAS 753

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
             G    +P       +  G  ++ +       ++V   V     +LL+VS +G      
Sbjct: 754 ASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGEELLLVSERGVIVRTS 813

Query: 628 ESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
             +I   +R   G    K+ + +K+  VV V  + +
Sbjct: 814 ADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/769 (35%), Positives = 422/769 (54%), Gaps = 48/769 (6%)

Query: 6   ISNSNTL-------VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           +++SN          E    A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+
Sbjct: 1   MTDSNQQGLFDAAPDEGGDAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM  MGL  GA   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNF
Sbjct: 61  FAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD+AAA RYTEAR+T +A+L+L  +DE  VDF   Y+    EP + P++ P +L N
Sbjct: 121 GSRDGDNAAAMRYTEARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVGMAT IP HN++E+ +A +ALI  P++   +L   I GPDF  GG I+     
Sbjct: 181 GASGIAVGMATEIPPHNLREVAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAAD 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------- 288
           I + Y  GRG  +VRARW  EE+ RG W +VVTE+P      +++E+I E          
Sbjct: 241 IAQIYAGGRGSLKVRARWQFEEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGK 300

Query: 289 --------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                      A  + LL+ +RDES +D  VR+V  PK   +D D  + ++   + ME+ 
Sbjct: 301 KSLTPEQTQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESS 360

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             +N+  +     P+   L  IL EWLA R   + RR+ FR+  +  R+ +L+G ++ YL
Sbjct: 361 ASVNLVCIGTDGRPRQKGLRDILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYL 420

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+DE+I  IR  D+P+  ++ RF+L++ Q + IL +RLR L +LE ++I+ EL++   E+
Sbjct: 421 NVDEVIQTIRESDEPRAALMERFNLSDRQAEDILEVRLRQLARLEGFKIEQELEDKRKEQ 480

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  LL++       +  EI       + +   G  R T  E +      + +  +  E
Sbjct: 481 VALQELLDNPNTLKRLLIKEIE------ADAKQYGDDRRTLIETAERA---VLETKVLDE 531

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TV++S +GW+R+ + H  D S   FK+GD L  A    TTD ++ +  +G+ Y++P  
Sbjct: 532 PVTVIVSQKGWLRARQGHGHDASQFGFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L S RG G+ +  +IDL     IV      +  + L+ +  G  F  + S++ +  R G
Sbjct: 592 GLPSARGDGQPVTTMIDLESGTRIVHTIAAAADSRWLLATRGGYGFAAKLSDMTSRQRAG 651

Query: 639 KTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K F+ + + +++   V +      +A++ +  K L+F +D++  +   G+G  L      
Sbjct: 652 KQFITLEAGDELLRPVPLFEGATQLALLSQKGKFLVFGLDEVKSLSGGGRGTILMGLDGA 711

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSEND------LLGWLGKRGGVGS 738
              D     +  G   + +AG   N+   D      L  ++GKR   G 
Sbjct: 712 DKLD---QTVPIGALGLRAAGIYRNKHTEDILAGAALAVYVGKRARKGR 757


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 240/778 (30%), Positives = 396/778 (50%), Gaps = 58/778 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VDF D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI+NPE+  E+LL  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQIL-GRAGIRETYLTGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G    ++ L  +L+ ++  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPI-LLTLRRMLQVFIDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  LT
Sbjct: 373 RVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHGLT 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++L+A+      +L   ++ +  I  E+ ++++
Sbjct: 433 DIQADAILQMQLRRLTALEADKIRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRD 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT    ++   +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RYPIE-----RRTEILNIAAGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I T      +     LL+++S G       S        G   + +   + + 
Sbjct: 605 PIPREEAITTLLAVSEFSDDSDLLMLTSGGFIKRTRLSAFSNIRSNGLIAINLEEGDALT 664

Query: 652 LVV-KVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704
            V   V GD V +       + F +   ++  + R  +GVR  + +DG      DV+  +
Sbjct: 665 WVRQAVPGDSVLIGTRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVE 724

Query: 705 IC--------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +                     EG   + ++     +        L KR G+G    K
Sbjct: 725 LADKVAQSSDDAADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMK 782



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 38/248 (15%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                A    L  +    +   +++++ G+I+  +  +        L A++ +EGD+L  
Sbjct: 606 IPREEAITTLLAVSEFSDDSDLLMLTSGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A   D +L+ +  G    + L    L         ++ + +L     +V+  V    
Sbjct: 666 VRQAVPGDSVLIGTRAGMTIHFRLSDEELRPLGRTARGVRSM-NLRDGDALVSMDVLPVE 724

Query: 610 ----------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVS 645
                                     +LV S+ G    V  ++     R G     +K  
Sbjct: 725 LADKVAQSSDDAADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFR 784

Query: 646 S-EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +  +++  +  +  G+ + +V E   ++  S D IP+ SR   GVRLQ    G     + 
Sbjct: 785 NQGDELVALRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDSLLKVV 844

Query: 703 FKICEGLT 710
               +  +
Sbjct: 845 LVPPQAES 852


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|332851017|ref|ZP_08433152.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332865611|ref|ZP_08436444.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
 gi|332730300|gb|EGJ61624.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150]
 gi|332735200|gb|EGJ66278.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113]
          Length = 739

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 433/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/756 (33%), Positives = 388/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++      +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L  G  P+++ +   L  +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGA-PKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+           +  RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    + +I +E + + +S  G+++              V
Sbjct: 490 GDP-----RRSEIL--YGISEDIDDEDLITQENVVITMSTNGYLKRIGVDSYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G     G     LI +
Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + ++ I      +          +  G       SE       GK  +     + +  V+
Sbjct: 603 DKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G D + +      ++ F  D +  +SR   GV   +   G   + +      G   +
Sbjct: 663 RTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   ++G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTG 757



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 13/207 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              +  G I+                A+ FKE D L   +     D I + ST G     
Sbjct: 623 FFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRF 682

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               +         +   I+LN  + +       +   LL V   G   +    +     
Sbjct: 683 HEDTVRPLSRAAMGVLG-INLNQGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTK 741

Query: 636 RKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R  K    +     +   +        + + ++    K++  S++Q+ E  +   GV+L 
Sbjct: 742 RNAKGVKTLRVTAKTGPVVTTTTVFGNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLI 801

Query: 691 SYKD-GGISDVICFKICEGLTWIDSAG 716
             K+   +  V  FK  E +    +  
Sbjct: 802 KLKEKERLETVTIFKKEEAIKTTTATE 828


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/762 (30%), Positives = 389/762 (51%), Gaps = 30/762 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E + + S+   +   Y+ Y++S I  RAIPD+RDG KPV R+I+  M E+GL    ++
Sbjct: 1   MPEEIISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD ++YD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++AE +L  +D++ V     ++    EP V P+K PNLL NG SGIAVGM T+IP
Sbjct: 121 EARMQRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ EA  ALIDNP+ +IE+L+EY+ GPDFPTGGII+  R+ I + Y  GRG   V
Sbjct: 181 PHNLSELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIM-GRDGIKKMYETGRGRMVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R    +EE   G+  IV++EIPY V K+ LI++IA +    R   + ++RDES +    V
Sbjct: 240 RGVAEIEEAKGGT-RIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP++++  ++  + ++T F  +M V+   + P++M L  I + ++ HR EV+
Sbjct: 299 VIELKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ + ++   ++  IL+GL  A   ID ++ IIRN     +    +     +T  Q  
Sbjct: 359 KRRTEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQETLEITPEQSQ 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL  L  LE  ++ +E   L+ + ++   +L+  K  +  I  E++E++  +  +
Sbjct: 419 AILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILSDDKNIYQIIKKELQELEAQYGDA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLS 541
                 R T   +         + +I  + + V ++ +G+I+                + 
Sbjct: 479 ------RRTKISIDGN-TDFNVEDVIPDDEVVVTVTKKGYIKATPLEDYRKQGRGGKGIR 531

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
            +   + D +   +      + +++++ GKAY +    L   S    G+ +   + +  +
Sbjct: 532 GVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSRSSRGKLLANYVKIEPD 591

Query: 600 QDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           + +           +   L++ + KG          I +   G   + ++  + +     
Sbjct: 592 ETVQAVLSVKREEVANKHLIITTRKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVDAGI 651

Query: 656 VTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTW 711
            T +   + +      ++ F I QI  M R   GV+  + + D  +         +    
Sbjct: 652 STSEEETIIISTRKGMVIRFPISQIRPMGRTAAGVKAMALRGDDEVVSATIVLPVDERYL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  R   +           R G+G     G  R+G  + S
Sbjct: 712 FTATERGVGKRTPLSEYRPQHRAGMGVKNIYGLERTGYVVGS 753



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 13/199 (6%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-DGKAYT 574
           ++ + +G I+       + S +  + A+   EGDS+  A  + + +  +++ST  G    
Sbjct: 611 IITTRKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVDAGISTSEEETIIISTRKGMVIR 670

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIA 633
            P   +         ++ +     ++ +    V       L   + +G       SE   
Sbjct: 671 FPISQIRPMGRTAAGVKAMALRGDDEVVSATIVLPVDERYLFTATERGVGKRTPLSEYRP 730

Query: 634 NTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
             R G     +   E+   VV        D + V+ +N   +      I    R  KGV+
Sbjct: 731 QHRAGMGVKNIYGLERTGYVVGSLVVTNEDEIIVITKNGMSIRIPAADIRPTGRVTKGVK 790

Query: 689 LQSYKDGGISDVICFKICE 707
           +   +D      +   + +
Sbjct: 791 VVELRDDDTVASLAVVVDQ 809


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 285/768 (37%), Positives = 429/768 (55%), Gaps = 41/768 (5%)

Query: 1   MGVDNISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN  +  +     E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MDDDNTLDLFTEPPAPEG-DFLTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRIL 59

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+E+GL   A   KSAR+VG+VIGK HPHGDQS YD+LVRLAQ F  RYPLI GQGNF
Sbjct: 60  YAMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNF 119

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  + EP   P++ P LL N
Sbjct: 120 GSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEEEPRQLPARLPFLLLN 179

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+  A +A+I NP+I+  +L++++ GPDFP GG I+ S   
Sbjct: 180 GASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHAELMQHLPGPDFPGGGQIISSEAE 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------- 288
           I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E          
Sbjct: 240 IAAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGK 299

Query: 289 --------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES +D  VR+V  PK+  +D    + ++   + +E+ 
Sbjct: 300 KALTPEQLQAKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESN 359

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I YL
Sbjct: 360 ASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYL 419

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++ F L++ Q D IL +RLR L +LE+ +I+ EL  L  EK
Sbjct: 420 NIDEVIRIIRESDEPKVALMAAFGLSDRQADDILEIRLRQLARLEKIKIEKELAELRDEK 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K++ LL S       +  EI       + +   G  R T  +  +       +A +  E
Sbjct: 480 AKLEELLGSESAMKRLLIKEIE------ADAKQYGDERRTLIQQEKRA---TYEARVIDE 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++   
Sbjct: 531 PVTVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVA 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + G
Sbjct: 591 SLPGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K+F+ + +       + +  D   VA +    +LL+F ID++  +   G+GV L +  D 
Sbjct: 651 KSFMTIDAGAVPLAPMPLLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMAL-DD 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
             + V    I      +  A R     E  L G      +GKR   G 
Sbjct: 710 KETLVQALAINGAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 250/836 (29%), Positives = 390/836 (46%), Gaps = 100/836 (11%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETALADPSDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSARIVG+VIGK HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA I+NP I+I++L++ + GPDFPT  +I+  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYH 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +R+R  +EE       IV+T IPYQV K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R   P++++  ++  +  ++ FP NM  +  G  P+++ +  I++ +
Sbjct: 300 SNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAI-RGGRPELLNIRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           +  R EV+ RR+ + +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARD 418

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ QV AIL+LRL  L  L   +I SEL  L A
Sbjct: 419 WPVAEIAPYLKLVEAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAELAA 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E   ++  F+             E++ A      + +IE
Sbjct: 479 AIAEYLAILGDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIEDEDLIE 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D++       T   +L  ST
Sbjct: 531 REEMVVTVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L  G     G  +  L+ L   + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATAN 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     ++++  V  +T  D V +     K + F    
Sbjct: 651 GTVRRNSMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGISDVICFKI-----------------------CEGLT-- 710
           + E  SR   GVR  + K  G  +VI   I                        EG    
Sbjct: 711 VREFQSRTSTGVRGMTLK--GDDEVISLSILHRSGADQDQREEYLRFAPWKPEKEGEMQD 768

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         +      Y +  +        RGG G        R+G  ++S
Sbjct: 769 QDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVAS 824



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 29/228 (12%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGW-IRSL--------KSHSVDLSALHFKEGDSLKI 553
             +D   +  A++ +E   ++ + +G  IR             S  +  +  K  D +  
Sbjct: 676 DDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQSRTSTGVRGMTLKGDDEVIS 735

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                          D +   L        +   E              + A + +    
Sbjct: 736 LSIL----HRSGADQDQREEYLR---FAPWKPEKEG-------EMQDQDMFALMKEREQF 781

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRK 669
           +L V + G   +    E     R G+    + +       +        D + +V +  K
Sbjct: 782 ILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVVASFPATQADQLMLVTDQAK 841

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           L+   +D +  + R   GVRL +  D     V   KI E     D+A 
Sbjct: 842 LIRMGLDSLRVIGRSSAGVRLFNVSDDEHV-VSAAKIEESDEAEDTAE 888


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 294/752 (39%), Positives = 430/752 (57%), Gaps = 38/752 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   K
Sbjct: 17  EGGDVLTLGHYAESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEA
Sbjct: 77  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSH
Sbjct: 137 RLTPIAQLLLDEIDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  AA+ALI NP+++  +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRA
Sbjct: 197 NLREIAAAAVALIRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIP 296
           RW +E++ RG W +VVTE+P      +++E+I EL                       + 
Sbjct: 257 RWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLD 316

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           LL+ +RDES +D  VR+V  PK+RSLD    ++S+   + +E+  PLN+ ++     P  
Sbjct: 317 LLDAVRDESGKDAPVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQ 376

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  R+  L RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK
Sbjct: 377 KGLGTILGEWVRFRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPK 436

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++S F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       
Sbjct: 437 AALMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRL 496

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  EI         +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK
Sbjct: 497 MIKEIE------GDAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALK 547

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +D ++  FK GD L  A    T D ++   + G+ +++P   L  GRG G  +  LI
Sbjct: 548 GHGLDPASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLI 607

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           +L     ++  F  ++  +LL+ SS G  FI +  ++++  + GK F+ +    +    +
Sbjct: 608 ELESGTHLMHYFAANAEQQLLLASSNGFGFIAKLGDMVSRVKAGKAFMTIDEGAEPLAPM 667

Query: 655 KV--TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
            V      VA +    +LL+F +D++  +S  G+GV L + +D   +      I      
Sbjct: 668 PVMPLATQVACLSGQGRLLVFGLDEMKTLSAGGRGVILMALED-KETLAQALAIDGRGVV 726

Query: 712 IDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
           +  AGR     E       L  +LGKR   G 
Sbjct: 727 LLGAGRGGKAQEVTLAGAALAPYLGKRARKGR 758


>gi|332705056|ref|ZP_08425141.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
 gi|332356233|gb|EGJ35688.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
          Length = 846

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 239/764 (31%), Positives = 382/764 (50%), Gaps = 68/764 (8%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPERPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +A   +L+ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQAIATNALLRDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ +  +A+I NPEI+
Sbjct: 121 FVDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLVAVIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR----GSWCIV 269
            ++L  YI GPDFPTG  I+     I ++Y  GRG   +R    +E +G+        I+
Sbjct: 181 DKELRRYIPGPDFPTGAQIL-GTSGIKDAYTSGRGSITMRGVAEIETIGQRGRPDKEAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  KRI  + DIRDES  +   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKASLIEKIAELVNDKRIDGISDIRDESDRNGMRIVIELKRDAYPKVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G  PQ++ +   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALV-GNEPQLLTIKQFLNVFLDFRIETITRRTQYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D +IA+IR        +  +V+ FSL+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I++E + L      +  +L    +    I  E +++K+ F+       RRT   +V    
Sbjct: 419 IQAEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATP-----RRTQIQQVEG-- 471

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAH 558
                  +I  E   ++++ +G+I+ +               +A   K+ D ++      
Sbjct: 472 -ELDDTDLIANEKAVILLTEQGYIKRMPVDEFRAQARATRGKAAARIKDDDEVEHFFTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
             D IL  S  G  Y+L A  +   S    G  I  ++ + H + I +      +     
Sbjct: 531 DHDSILFFSDRGVVYSLRAYQIPAVSRTARGVPIVQMLPIPHEEKITSIVPVSEFTDDEY 590

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           L++++ KG                G   + +   ++++ V++    D + +   +   + 
Sbjct: 591 LVMLTHKGYIKKTALDAFSKIRANGLIAISLGEGDQLRWVLRAREEDSIIIGSRHGMAIH 650

Query: 673 FSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI------------------------ 705
           F  D  Q+  + R  +GV+    K  G  ++I   I                        
Sbjct: 651 FKCDNDQLRPLGRATRGVKAMKLK--GDDELIGMDILSGQIIASLAAAEDSEEETEDLSD 708

Query: 706 -------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +G   +      Y +        L  R G+G    K
Sbjct: 709 SEMVETAAQGPWVLIVTMGGYGKRVPVSQFRLQNRAGMGVRSTK 752



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 146/470 (31%), Gaps = 61/470 (12%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMN 344
           IA   +   I ++    D +    ++V          D +++  +  L+ +E +    + 
Sbjct: 364 IALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQ---KIQ 420

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
                   ++  L  IL         +       +      R   ++ +     + D I 
Sbjct: 421 AEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATPRRTQIQQVEGELDDTDLIA 480

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE--KID 462
                    +   + R  + E +  A          + +      + D +         D
Sbjct: 481 NEKAVILLTEQGYIKRMPVDEFRAQA-------RATRGKAAARIKDDDEVEHFFTCCDHD 533

Query: 463 SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           S+L  +     ++  A +I  V      +  +   +           + +  +    +  
Sbjct: 534 SILFFSDRGVVYSLRAYQIPAVSR---TARGVPIVQMLPIPHEEKITSIVPVSEFTDDEY 590

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V+++++G+I+        K  +  L A+   EGD L+  L A   D I++ S  G A  
Sbjct: 591 LVMLTHKGYIKKTALDAFSKIRANGLIAISLGEGDQLRWVLRAREEDSIIIGSRHGMAIH 650

Query: 575 LPAGN---LLSGRGH---------------------GEAIQLLIDLNHNQDIVT------ 604
               N      GR                       G+ I  L     +++         
Sbjct: 651 FKCDNDQLRPLGRATRGVKAMKLKGDDELIGMDILSGQIIASLAAAEDSEEETEDLSDSE 710

Query: 605 -AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGD 659
                     +L+V+  G    V  S+     R G        ++  ++   L V   GD
Sbjct: 711 MVETAAQGPWVLIVTMGGYGKRVPVSQFRLQNRAGMGVRSTKFRLPKDQLAALQVVNEGD 770

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICE 707
            + +V     ++  ++D I   SR   GVR+Q   D   I+ V    I +
Sbjct: 771 ELMIVTSRGIIIRQAVDAISPQSRMATGVRVQKLDDEDAIAAVALVPISD 820


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 288/765 (37%), Positives = 430/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 2   DDNTSDLFAGSDSPEADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++ E+L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIAS 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + S+   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LN+D
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLD 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL++L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANDSAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GDSL  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + +         + V      VA +    +LL+F ID++  +   G+GV L +  D   +
Sbjct: 653 MTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGGALEPHVGKRARKGR 756


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 277/746 (37%), Positives = 432/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   D++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI GPD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ DIRDES   
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELAAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +   V        +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVVRAEAVQIKEQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  S+ G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LEDEESELIAASTSGYGFKTQTKQLDTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L           +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLAELPNLNKGKGNKLIQLDAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ K L
Sbjct: 711 LQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 228/736 (30%), Positives = 381/736 (51%), Gaps = 24/736 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D  AA RYTEAR++ +A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAM 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +D+  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++EI +
Sbjct: 132 ELLRDIDKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  AL+ NP +++ +L+  + GPDFPTGG I+   E I E+Y  G+G   +R++  +E+V
Sbjct: 192 ACFALMANPSMTVAELMTIVRGPDFPTGGTIM-GEEGIREAYASGKGRIYIRSKAEIEDV 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPYQV KSRL+  +  + + KR+  + ++RDES  +   ++    +  D
Sbjct: 251 RGGKQQIVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELKKDAD 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              ++  +F  +D++  F  NM  +     P+ + L  +L  ++ H++EV+  R+ F ++
Sbjct: 311 AQGILAYLFKKTDLQVTFNFNMVAIVNKA-PRQLGLKEMLAAYIDHQKEVVTNRTRFDLE 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  +L+GL+ A   +DEIIA I   +N    +  +VS+F  TE Q DAIL L+L  
Sbjct: 370 KAEDRAHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSKFGFTERQADAILTLQLYR 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  Q++ EL         + S+L S K+  + I  E+ E++  F         R +
Sbjct: 430 LTNLEITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTKFGID------RRS 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-----LHFKEGDSLKI 553
                  +     + M++ E + + +S  G+I+     S   S         K+GD ++ 
Sbjct: 484 DIRGEVEELKVNLEVMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESAGVKDGDVVRH 543

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
            L  +T D +LL +  G+ + LP   +     + +G A+  +I L+    ++       +
Sbjct: 544 LLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIGIVPIRDF 603

Query: 609 D-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
           D ++  LL ++ +G     E  E  +N        KV   +++  V++      + +V  
Sbjct: 604 DQASASLLFITKRGQVKRTELKEYKSNRSTAIAACKVGDGDEVIAVLESNSNQELLLVSR 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F   ++  M R   GVR    KD            +    +  +   Y +    
Sbjct: 664 QGMAIRFPETEVNPMGRVAAGVRGMQLKDDDEIVGCALVANDEGEVLVLSDLGYGKRSLL 723

Query: 726 LLGWLGKRGGVGSLVP 741
               +  RGG G    
Sbjct: 724 AEYPIQGRGGKGIATF 739


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|332874996|ref|ZP_08442843.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736806|gb|EGJ67786.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059]
          Length = 739

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 433/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------TDAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  F   +   LL+ SS G  F+ +  ++++  + GK+F+ + +       + V  D
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 AAQVACLSSGGRLLVFGMDEMKALSGGGRGVILMAL-DAKETLVQALAINAAGVVLTGTG 729

Query: 717 RSYNRSENDLLGW-----LGKRGGVGS 738
           R     E  L G      +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/738 (33%), Positives = 381/738 (51%), Gaps = 63/738 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM E G      ++KSAR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM +
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D+D VDF+D Y+ +  EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRGGARKAYLEGRGSVIIRAKTRV 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  W I+V EIPYQV K+ +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 251 EEIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
               +++M  ++  + ++T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++
Sbjct: 311 DATAEVVMNQLYRFTPLQTYFGCNMLALN-GGRPEQLTLRKFLTYFIDFREDVVARRTAY 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------- 417
            ++    R  +L GL +A  NIDE++A IR                              
Sbjct: 370 LLRKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALID 429

Query: 418 --------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      ++L+E Q  AIL+LRL+ L ++   ++  EL+ L  + ++   +L S  
Sbjct: 430 DPTHTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRD 489

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    IA E+REV+E+F+       RRT   E+         + +I +E + V ++  G+
Sbjct: 490 RIMGIIADELREVRELFAVP-----RRT---EIVDWSGDMEDEDLIAREDMVVTVTQGGY 541

Query: 530 IRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+                      KE D +     A+T  ++L  +TDG AY L    L 
Sbjct: 542 IKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 601

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIA 633
            G     G+AI  ++ +     I      D   K      ++  +S G       S+   
Sbjct: 602 QGARTSKGKAIVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTN 661

Query: 634 NTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GV 687
               GK  +K   E      +   +    D V +V  + + + F  + +    SR   GV
Sbjct: 662 VKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGV 721

Query: 688 RLQSYKDGGISDVICFKI 705
           R       G   V+   +
Sbjct: 722 RGVKL--SGHDKVVSMSV 737


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 245/832 (29%), Positives = 389/832 (46%), Gaps = 107/832 (12%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           + + + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ A  E G   G  ++KS
Sbjct: 3   DYERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVG+V+G  HPHGD ++YD+L R+ Q +  R PLI GQGNFG++D D  A+ RYTEAR
Sbjct: 63  AKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VA  +L  +D+D VDF D Y+    EP V P++FPNLL NG  GIAVGMAT++P HN
Sbjct: 123 LAKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA I NP I+ E+L++YI GPDFPT  +I+  +     +Y  GRG   +RAR
Sbjct: 183 LGEVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLIL-GQAGARAAYTTGRGSVLMRAR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE       IV T IPYQV KS L+EKIA+    KRI  + DIRDES+ +   V+  
Sbjct: 242 HEIEEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVD 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  I+  +  +  FP NM  +  G  P+V+ L  I++ +++ R EV+ RR
Sbjct: 302 LKRDASPEVVLNQIWRYTPAQASFPANMLAI-KGGRPEVLTLRDIVQAFVSFREEVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------------- 414
           + F +     R  +L GL++A  N+DE++A+IR    P+                     
Sbjct: 361 TKFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQ 420

Query: 415 ---------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                          + L+E QV AIL+LRL  L  L   +I  EL  L +E E+  S+L
Sbjct: 421 LIEAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSIL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               + +  +  E+ E+K+ ++             E++ A      + +I +E + V ++
Sbjct: 481 ADRGKLFGVLQDELVEIKDEYATP--------RVSEIAPAWDGLEDEDLIAREDMVVTVT 532

Query: 526 NRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           + G+I+                 S +  K+ D++       T + +L  +  G+ Y +  
Sbjct: 533 HGGYIKRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKV 592

Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEES 629
             L  G     G  +  L+ L  ++ +                 ++  + +G        
Sbjct: 593 WKLPEGSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMD 652

Query: 630 EIIANTRKGKTFLKVSS--EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SR-G 684
                   GK  +       +++  V  ++ D  + +  +  K + F+     E  SR G
Sbjct: 653 AFTNVPTGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTG 712

Query: 685 KGVRLQSYKDGGISDVICFKICEGLT---------------------------------- 710
            GVR  + KD   + V+   + + L                                   
Sbjct: 713 IGVRGMTLKDD--AKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEE 770

Query: 711 ----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-----RSGKFLSS 753
                +      Y +  +        RGG G     G P     R+G  ++S
Sbjct: 771 GEEFILTLTANGYGKISSAYEYRTIGRGGQGLANI-GTPDSNPERNGPVVAS 821



 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 69/253 (27%), Gaps = 59/253 (23%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGWIRSLKSHSV--- 538
              T  GR       +   ++ T   ++ E E        V  + +G +R     +    
Sbjct: 598 GSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNV 657

Query: 539 ---DLSALHFKEG--DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 A+ F EG  D L           I L S  GKA    A +    +         
Sbjct: 658 PTGGKYAMGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRG 717

Query: 594 IDLNHNQDIVTAFVYD-------------------------------------STCKLLV 616
           + L  +  +V+  V D                                         +L 
Sbjct: 718 MTLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILT 777

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVT-----GDHVAVVGENR 668
           +++ G   I    E     R G+    +    S  +    V  +     G  + +V +  
Sbjct: 778 LTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQLMLVTDQA 837

Query: 669 KLLIFSIDQIPEM 681
           KL+   I +   M
Sbjct: 838 KLIRMPI-EFRHM 849


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 433/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 8   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 67

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 68  GKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 128 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 188 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 248 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 302

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 303 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 362

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 363 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 422

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 423 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 482

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 483 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 537 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 596

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 597 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 656

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 657 SAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 715

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 716 DLQKYMGKRASKGQLLPRGYQKANKLL 742


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIREI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEND-----LLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEESLAGGALEPHVGKRARKGR 756


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 405/762 (53%), Gaps = 28/762 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             + E    +V +   +   YL YA+S I  RA+PD+RDG KPVHRRI+  M EMGL   
Sbjct: 2   EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +FKK ARIVG+V+GK HPHGD SVYD+LVRLAQ F  RYP+++ QGNFG+IDGD AAA 
Sbjct: 62  TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M+++ E +LQ + ++ V+F   Y++   EP V P+ FP LLANG+SGIAVGMAT
Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+QEIC+A  A+IDNP+I+I++L+E+I GPDFP+GGII    + I +++  GRG 
Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIIC-GLQGIKDAFMTGRGK 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR+ + +E   R    IV TEIPYQV K+ L++KI +L     IP++  +RDES    
Sbjct: 241 IVVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKG 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++       +P +++  +F  + +++ F +N   L     PQ++ L  +L  ++ HR 
Sbjct: 301 IRIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALV-QGRPQMLTLKDMLVYYIRHRE 359

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ F ++    R  IL+GL I   NIDE+I II++          +VSRF L + 
Sbjct: 360 EVVTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSRFGLDQI 419

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI++++L  L  LE  +I  EL +L  +      +L+   +    +  E+R +    
Sbjct: 420 QAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQEVLSDEGKILKLVQSEVRALPSSL 479

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---- 542
                   RR T        ++TL +  I+ E + V+ISN+G+ + +++   +       
Sbjct: 480 VPK----DRRLTKIAREELGQSTL-EDFIKDEQVVVLISNKGFAKRIRAEEYEAHGRAGK 534

Query: 543 ----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
                  ++GD +     A T + ++ ++  GKAY      +        G +I+ ++ L
Sbjct: 535 GTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVFEIPEASKTAKGTSIKNILQL 594

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
              + I +      +     L++ +  G    V  +  +    +G   L +   +++   
Sbjct: 595 ETTEKITSIISFKEFSEDHYLMMATRDGVVKKVSLNNFVNAKVRGIRALFLDEGDELLSC 654

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQS-YKDGGISDVICFKICEGLT 710
             +  GD V ++ +  + L F  D +  M R  +GVR      +  ++ ++     + + 
Sbjct: 655 DLIQEGDEVMLITKLGRGLRFRQDNVRAMGRASRGVRGIRLLANDQVAGLLKVDSTKRIL 714

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I   G+   +  N     +  RG  G  + +   ++   + 
Sbjct: 715 MITENGQG--KQVNFDSFTVHGRGTQGQKIYRLGGKASFIVG 754



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 16/217 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    + +      ++   ++ +  G ++ +  ++        + AL   EGD L   
Sbjct: 595 ETTEKITSIISFKEFSEDHYLMMATRDGVVKKVSLNNFVNAKVRGIRALFLDEGDELLSC 654

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L++  G+       N+   R  G A + +  I L  N  +      DST 
Sbjct: 655 DLIQEGDEVMLITKLGRGLRFRQDNV---RAMGRASRGVRGIRLLANDQVAGLLKVDSTK 711

Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENR 668
           ++L+++  G    V       + R  +G+   ++  +    + V    D   V       
Sbjct: 712 RILMITENGQGKQVNFDSFTVHGRGTQGQKIYRLGGKASFIVGVLSVDDENDVVCATLMG 771

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + L   ++ I    R   GV++ S K  G S V    
Sbjct: 772 QTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIAS 808


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKEALVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSENDLLGW-----LGKRGGVGS 738
           R     E  L G      +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/746 (36%), Positives = 431/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  NL S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISNLPSARGLGEPLSSKLAPASGVAFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GK+FL V  + K + L+      H+AV+ 
Sbjct: 591 LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLSELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ K L
Sbjct: 711 LQKYMGKRASKGHLLPRGYQKANKLL 736


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 273/746 (36%), Positives = 431/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F + E 
Sbjct: 357 IRKKTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GWIR+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  RI  L   G++Y LP  +L S RG GE +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVAFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GK+FL V  + K + L+      H+AV+ 
Sbjct: 591 LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +       +     + +  + +  +      +D
Sbjct: 651 SAGRLLIIDLSELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVVAGQQHLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ K L
Sbjct: 711 LQKYMGKRASKGHLLPRGYQKANKLL 736


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 246/837 (29%), Positives = 388/837 (46%), Gaps = 101/837 (12%)

Query: 6   ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++   L +  ++  +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ +  E 
Sbjct: 1   MTDETALADPSDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHES 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      ++KSARIVG+VIGK HPHGD ++Y +L R+ Q +  R PLI GQGNFG++D D
Sbjct: 61  GFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSMDPD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ +V   +L  +D+D VDF+  Y+  +SEP V P++FPNLL NG  GIA
Sbjct: 121 PPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+  A LA IDN  I+I++L++ + GPDFPT  +I+  +     +Y 
Sbjct: 181 VGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYH 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RAR  +EE       IV+T IPYQV K+ L+EKIAE    KRI  + DIRDE
Sbjct: 240 TGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDE 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S+ +   ++    R   P++++  ++  +  ++ FP NM  +  G  P+++ +  I++ +
Sbjct: 300 SSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAI-RGGRPELLNIRDIIEAF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------ 418
           +  R EV+ RR+ + +     R  IL GL+IA  N+DE++ IIR    P           
Sbjct: 359 VRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARD 418

Query: 419 ----------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                   + L++ QV AIL+LRL  L  L   +I +EL  L A
Sbjct: 419 WPVAEIAPYLKLVEAIETEVGGDSYRLSDTQVRAILDLRLHRLTALGRDEIGNELAELAA 478

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              +  ++L    + +  +  E   ++  F+             E++ A      + +IE
Sbjct: 479 AIAEYLAILGDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIDDEDLIE 530

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V ++ +G+I+                 S +  K+ D++       T   +L  ST
Sbjct: 531 REEMVVTVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFST 590

Query: 569 DGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            GK Y L    L  G     G  +  L+ L+  + I T               ++  ++ 
Sbjct: 591 AGKVYRLKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATAN 650

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSS--EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ 677
           G                GK  ++     ++++  V  +T  D V +     K + F    
Sbjct: 651 GTVRRNSMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATD 710

Query: 678 IPE-MSRG-KGVRLQSYKDGGISDVICFKI------------------------------ 705
           + E  SR   GVR  + K     +VI   I                              
Sbjct: 711 VREFQSRTSTGVRGMTLKKD--DEVISLSILHRSGANQEERDDYLRFAPWKAEKEGSPQM 768

Query: 706 ---------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                     +    +      Y +  +        RGG G        R+G  ++S
Sbjct: 769 SAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRNGPVVAS 825



 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 70/231 (30%), Gaps = 31/231 (13%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGW-IRSL--------KSHSVDLSALHFKEGDSLKI 553
             +D   +  A++ +E   ++ + +G  IR             S  +  +  K+ D +  
Sbjct: 676 DESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQSRTSTGVRGMTLKKDDEVIS 735

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAG-NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +L  +                +   E    +      +      +     
Sbjct: 736 L--------SILHRSGANQEERDDYLRFAPWKAEKEGSPQMSAERFAE------LAAKEQ 781

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENR 668
            +L V + G   +    +     R G+    + +       +       GDH+ +V +  
Sbjct: 782 FILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRNGPVVASFPARHGDHLMLVTDQA 841

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKICEGLTWIDSAG 716
           KL+   ++ +  + R   GVRL +  D    +S     +  E       AG
Sbjct: 842 KLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIEESDEETEVSTPAG 892


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 220/743 (29%), Positives = 379/743 (51%), Gaps = 24/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM +        ++K
Sbjct: 5   EQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + LI G GN+G++D D AAA RYTEA
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  IL+ +D+  V F+D ++    EPVV PS++PNLL NGTSGI+ G AT IP H
Sbjct: 125 RLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +++E  +A +A++  PE+++E+L+  + GPDFPTGGII+   E I E+Y  G+G   +R+
Sbjct: 185 SLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGGIIM-GEEGIREAYTTGKGRIYIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+V  G   I +TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 244 KVEIEDVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  +   +D++  +  NM  +     PQ + +  IL  ++ H++EV+  
Sbjct: 304 ELKKEADANGILAYLLKKTDLQVTYNFNMVAIVNKA-PQQLGIKQILNAYINHQKEVVTH 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  +++GL+ A   +DE+IA I   +N    +  +V+++  +E Q DAI
Sbjct: 363 RTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ E      +   + S+L S K+    I  E+ E++E +     
Sbjct: 423 LTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYGID-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFK 546
               R +       +     + M++ E + V +S  G+++            DL     K
Sbjct: 481 ----RRSSIRGEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           EGD++      +T D +LL +  G+ Y LP   +     +  G A+  ++ +  +  IV 
Sbjct: 537 EGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVA 596

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                        L+ V+ +      E  E +          KV+  +++  V    G  
Sbjct: 597 IIPVKDFNLPGASLVFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIRVTLSEGTK 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + +V +    + FS  ++  M R   GVR    ++        +   +    +      
Sbjct: 657 QLLLVSKLGMSIRFSEQEVNAMGRVAAGVRGMQLREDDELIAAEWVADDEGEVLVVTDLG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +    L   L  RGG G    
Sbjct: 717 YAKRTLLLDYPLQGRGGKGVQTF 739


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 268/746 (35%), Positives = 433/746 (58%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL + 
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G   D  S AA
Sbjct: 62  SKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +EL+L  + +   +++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSELLLSELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP ++ EK+ EYI  PD PT   I+     +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + V         I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYSV-----DKNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHA 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAESVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+  + RR  + +  I++R+ IL GL+IAYLNIDE+I IIR ED+PKPV++ RF++ E 
Sbjct: 357 IRKTTVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIQIIREEDQPKPVLMQRFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +++ E + L A+   I   L + +   + I  E+++  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEMRREQEELEAKAAVIREQLANPESLKSLIISELKDDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   + +       +  M+  +P+TVV+S  GWIR  K H VD   L+F+
Sbjct: 477 GD-----DRRSPIVQRAE-AAVINETEMLPADPVTVVLSEAGWIRCAKGHEVDAENLNFR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L    L S RG GE +   +            
Sbjct: 531 AGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTLPSARGLGEPLSSKLSPGSGVGFKQVL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
           V +   ++L  S+KG  F  +  ++  + + GK FL +S   ++  +  +    HVA++ 
Sbjct: 591 VAEDETEILAASNKGYGFKTQAKQLDTSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   +DG     +     + +  + +  +      +D
Sbjct: 651 SAGRLLIVDLAELPVLNKGKGNKLIQLEDGDQILSMTLLKLDEIIQVLAGQQQLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKRG  G L+P+G+ ++ K L
Sbjct: 711 LRKYIGKRGAKGQLLPRGYQKANKLL 736


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 230/709 (32%), Positives = 377/709 (53%), Gaps = 34/709 (4%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD 
Sbjct: 1   MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAV
Sbjct: 61  AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  
Sbjct: 121 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE+
Sbjct: 180 GRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDET 239

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +      V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +
Sbjct: 240 SLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHY 298

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRF 421
           L H++ V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  +  K  M     RF
Sbjct: 299 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRF 358

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E
Sbjct: 359 KLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTE 418

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +++ F      G  R T  ++   +     + +I +E I + +S+  +I+          
Sbjct: 419 IRDRF------GDDRRTEIQLGGFE-DLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQ 471

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                 +  ++  E D +   +   T D +L  +  G+ Y L    +   S +  G  + 
Sbjct: 472 NRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVV 531

Query: 592 LLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I+L +++ I T             L+  + +G       S      R GK  +    +
Sbjct: 532 NAIELENDEIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFRED 591

Query: 648 EKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++  V   +G    ++   +  L+ F    +  + R   GV+  + ++G   +V+   +
Sbjct: 592 DELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREG--DEVVGLDV 649

Query: 706 CEG---LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                    +      Y +        L  RGG G        R+G  +
Sbjct: 650 AHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVV 698



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 14/213 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
                    + +  ++   V  + RG ++     +          A+ F+E D L     
Sbjct: 540 EIISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVRL 599

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC--KL 614
               + IL+ ++       P   L         ++  I L    ++V   V  +    ++
Sbjct: 600 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKG-ITLREGDEVVGLDVAHANSVDEV 658

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKL 670
           LVV+  G       ++   + R GK     +  E+   VV +T     + + +V     +
Sbjct: 659 LVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVI 718

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           +   +  I +  R   GVRL    D      + 
Sbjct: 719 IRLDVADISQNGRAAQGVRLIRLGDDQFVSTVA 751



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 12/222 (5%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E D +++    +   L S               +   S  + + R           D
Sbjct: 534 IELENDEIISTMIAVKD-LESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD 592

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSL--KIALHA 557
           +    +    +E I +  S+   IR        L   +  +  +  +EGD +      HA
Sbjct: 593 ELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHA 652

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++ D +L+++ +G     P  +       G+ I+       N ++V          L++V
Sbjct: 653 NSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIV 712

Query: 618 SSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT 657
           ++ G    ++ ++I  N R   G   +++  ++ +  V KV 
Sbjct: 713 TNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 433/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLVELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/747 (38%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +       + V  D
Sbjct: 611 SHLLHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 730 RGGKAQEEALAGGALEPHVGKRARKGR 756


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/776 (32%), Positives = 403/776 (51%), Gaps = 36/776 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D + ++  +  E ++ V +   +E+ Y+ YA+S I  RA+PD RDG KPV RRI++A
Sbjct: 1   MSSD-VPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMG+   +  +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNFG+
Sbjct: 60  MEEMGVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM  +AE +L  +D+D VDF   Y++  +EPVV P++ PNLL NG 
Sbjct: 120 VDGDPPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE------YIIGPDFPTGGIIVE 234
           SGIAVGM+T+IP HN+ E+ +AA+ LIDNP+ ++  L++      YI GPDFPTG   + 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGA-NIV 238

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           +RE I ++Y  GRG  RVRA   +E   RG   IVVTE+PYQ  K+R IE+IAE +   +
Sbjct: 239 NREGIWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGK 298

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + DIRDES  D   V+    R  + D++   + +   +E  F +    L   + P+V
Sbjct: 299 IEGIRDIRDESDRDGVRVVIECKRGSNADVVKNQL-LEHHLENTFSIISLALVDDQ-PRV 356

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L  +L+ ++ HRREV+ RRS F +Q    R  IL+G L+A  N+D+++  I+N D   
Sbjct: 357 LNLKELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRD 416

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                +   + L+E+Q + I+ ++L SL  +E  +I++E +++ AE E+++++LN   + 
Sbjct: 417 AAMAALRKAYDLSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLETILNDESEL 476

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+R++K  ++             +V     +  ++ +I +E + VV++   +++
Sbjct: 477 LGVIKDELRDIKAEYADERQ--------TDVIEDAGSVTREDLIAEEEVVVVVTEEDYVK 528

Query: 532 SLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
            +     D              KEGD +     A T D +L  +  G+ Y L    L   
Sbjct: 529 RMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEM 588

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                G +   ++DLN  ++I      D      L + +  G       SE       G 
Sbjct: 589 GRTARGTSAVNVLDLNDGEEITAVVNTDDIDEGYLAMATEAGYVKRTAVSEFENVHAGGI 648

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGG 696
             + +  ++ +  V    GD   +V  ++   + F       M R  +GV     + D  
Sbjct: 649 RAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGVNGIKLEGDDR 708

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++     +    +      Y +           R G G +  K   R+G   S
Sbjct: 709 ATGLVAASSDDDRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDERNGPVCS 764



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 67/180 (37%), Gaps = 11/180 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            E    + +  G+++          H+  + A+  ++ DSL           +L+ +  G
Sbjct: 619 DEGYLAMATEAGYVKRTAVSEFENVHAGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHG 678

Query: 571 KAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
                   +    GR       + ++ +     + A   D    LL V+  G       S
Sbjct: 679 MTIRFDESDARPMGRSARGVNGIKLEGDDRATGLVAASSDDDRDLLTVTKNGYGKRTPLS 738

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E    +R GK  + + ++E+   V  +      D + ++ E+ +++  ++D+I  + R  
Sbjct: 739 EYRRQSRYGKGLVDIKTDERNGPVCSLDAVSEDDGLVIMSESGQIMRTTVDEISTVGRNT 798


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/843 (30%), Positives = 404/843 (47%), Gaps = 112/843 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G  +
Sbjct: 3   EQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHY 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA
Sbjct: 63  NKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAVGMA
Sbjct: 123 MRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A  A IDN +I+I +L+E + GPDFPTGG I+ +   I  +Y  GRG
Sbjct: 183 TNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VR +  +E        I++TEIP+ V K+ L+EKIAEL+  K+I  +  IRDES + 
Sbjct: 242 KIIVRGKTDIE-SDSLKHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNKS 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +  + DL++  ++  + ++T F + M  L    +P+ M L  I+  +   R
Sbjct: 301 GIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLAL-DQGIPKTMTLKDIIVAFTNFR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS--- 422
            EV+ +R+ F +     +  IL G++IA  NIDE+I IIR   N ++ K  +++R     
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q  +IL LRL+ L   E  +++ EL+NL+ E + 
Sbjct: 420 DVYDLVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKA 479

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L S  +    +  E+ ++KE FS        R T  E    ++    + +I +E +
Sbjct: 480 YLEILGSRDKLLETMKFELNQIKEQFST------TRLTTIENQEFEQDI--EDLIPEEEV 531

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V ++  G+I+          K           +  D +      +T   IL  S  G+ 
Sbjct: 532 VVTVTLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQV 591

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST-------CKLLVVSSKGNA 623
           Y L    L  G     G  I  LI +  N+ I       +          ++  +  GN 
Sbjct: 592 YNLKVYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNI 651

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPE-M 681
              + S+       GK  +++   + +  V     G+HV +  +N K + F +  +    
Sbjct: 652 RRNDLSDFKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFK 711

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLT------------------------------ 710
           SR   GV+           VI   I +G+                               
Sbjct: 712 SRTSDGVKAIKL--AANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKNKSLQPNI 769

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +  +   Y +  +     + KRGG G       P++GK
Sbjct: 770 DLSKYNLTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSPKTGK 829

Query: 750 FLS 752
            +S
Sbjct: 830 VVS 832



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 83/297 (27%), Gaps = 68/297 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP------ITVVISNRGWIRS 532
           ++  K         GR       +   +  T    M  +          +  +  G IR 
Sbjct: 594 LKVYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRR 653

Query: 533 LKSHSVDLSALHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                    A + K      EGDSL         + +LL + +GKA   P  +L   +  
Sbjct: 654 NDLSDFKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSR 713

Query: 587 GEAIQLLIDLNHNQDIVTAFVY-------------------------------------- 608
                  I L  N  +++  +                                       
Sbjct: 714 TSDGVKAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKNKSLQPNIDLSK 773

Query: 609 ------------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
                        +   +L VS  G        E     R GK    ++   K   VV V
Sbjct: 774 YNLTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSPKTGKVVSV 833

Query: 657 ----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL-QSYKDGGISDVICFKICE 707
                 + + ++  + KL+   ++ +  + R   GV L ++ KD  +  +   K  +
Sbjct: 834 LSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTD 890


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSENDLLGW-----LGKRGGVGS 738
           R     E  L G      +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 413/750 (55%), Gaps = 41/750 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM  MGL  GA   KSAR+V
Sbjct: 25  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARVV 84

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 85  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 144

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 145 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 204

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI  P++   +L   I GPDF  GG I+     I + Y  GRG  +VRARW  E
Sbjct: 205 AQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITPAADIAQIYGTGRGSLKVRARWTFE 264

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDI 301
           E+ RG W +V+TE+P      +++E+I E                     A  + LL+ +
Sbjct: 265 EMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDAV 324

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK   +D D  + ++   + ME+   +N+  +     P+   L  
Sbjct: 325 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 384

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+A R   + RR+ FR+  +  R+ +L+G ++ YLN+DE+I  IR  D+P+  ++ 
Sbjct: 385 ILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRMLVYLNVDEVIQTIRESDEPRAALME 444

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE ++I+ EL +   ++  +  LL++       +  EI
Sbjct: 445 RFKLSERQAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLDNPTTLKRLLIKEI 504

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 505 E------ADAKQYGDERRTLIETAERA---VLETKVLDEPVTVIVSQKGWLRARQGHGHD 555

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S   FK+GD L  A    TTD ++ +  +G+ Y++P G L S RG G+ +  +IDL   
Sbjct: 556 ASQFTFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLPSARGDGQPVTTMIDLESG 615

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             IV         + L+ +  G  F  + S++++  R GK F+ + + ++M   V +   
Sbjct: 616 TRIVHTIAAAPESRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFEG 675

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+A++    K L+F +D+   +   G+G  L         D     +  G   + + G
Sbjct: 676 ATHLALLSAKGKFLVFGLDECKSLSGGGRGTILMGLDASDKLD---QTVPIGARGLRATG 732

Query: 717 RSYNRSEND------LLGWLGKRGGVGSLV 740
              N+   D      L  ++GKR   G  +
Sbjct: 733 IYRNKLTEDILAGDALAPYVGKRARKGRQL 762


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSENDLLGW-----LGKRGGVGS 738
           R     E  L G      +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|332381809|gb|AEE66656.1| DNA topoisomerase IV subunit A [Bordetella pertussis CS]
          Length = 771

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 265/752 (35%), Positives = 414/752 (55%), Gaps = 41/752 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E                     A  + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL++       +  
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIK 498

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI         +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H 
Sbjct: 499 EIE------GDAKQYGDDRRTLIETAERA---VLETKVVDEPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               IV         + L+ + +G  F    S++ +  R GK F+ +   +++   V + 
Sbjct: 610 AGTRIVHTIAAAPDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                +A++    K L+F +D++  +   G+G  L         D     +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLDTADKLD---QTVPIGAAGLRA 726

Query: 715 AGRSYNRSEND------LLGWLGKRGGVGSLV 740
           AG   N+   D      L  ++GKR   G  +
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/775 (30%), Positives = 393/775 (50%), Gaps = 58/775 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +    +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP H
Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R 
Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRG 256

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D  
Sbjct: 257 VAAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGM 316

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++ L+ +++ F  +M  L  G    ++ L  +L+ +L  R E
Sbjct: 317 RIVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPI-LLTLRKMLEVFLDFRVE 375

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+E Q
Sbjct: 376 TIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHGLSEVQ 435

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +
Sbjct: 436 ADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVFGIIQDELAQLRDRHA 495

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
                  RRT   E+           +I  E   V+++  G+++ +     + ++   + 
Sbjct: 496 IP-----RRT---EILDLGGGLDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 547

Query: 547 -------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
                    +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+ + 
Sbjct: 548 KAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIP 607

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      ++    LL+++  G       S        G   + +   + +  V 
Sbjct: 608 REEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVR 667

Query: 655 K-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGI---SDVICFKIC- 706
             V+GD V +       + F +  D++  + R  +GVR  + +DG      DV+  ++  
Sbjct: 668 LAVSGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELAD 727

Query: 707 -------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                              +G   + ++     +        L KR G+G    K
Sbjct: 728 RVAQSGDDDSDDDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 782



 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 89/262 (33%), Gaps = 38/262 (14%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +    +   ++++  G+I+  +  +        L A+  +EGD+L  
Sbjct: 606 IPREEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTW 665

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A + D +L+ S  G    + L    L         ++ + +L     +V+  V    
Sbjct: 666 VRLAVSGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSM-NLRDGDALVSMDVLPVE 724

Query: 610 ----------------------STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS 645
                                     +LV S+ G    V  ++     R G     +K  
Sbjct: 725 LADRVAQSGDDDSDDDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR 784

Query: 646 SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++    + ++V   G+ V +V E   ++  S D IP+ SR   GVRLQ    G     + 
Sbjct: 785 TDADALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVV 844

Query: 703 FKICEGLTWIDSAGRSYNRSEN 724
               E  +   + G     +  
Sbjct: 845 MVPPEAESDDATEGEGEEVTAE 866


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 249/780 (31%), Positives = 394/780 (50%), Gaps = 55/780 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   ++   L YA+S I  RA+PD+RDG KPVHRRI++ + E GL    A++K 
Sbjct: 8   KVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKAYRKC 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG V+G+ HPHGD SVYD+LVRLAQ F  RYPL+ G GNFG+IDGD  AAYRYTEA+
Sbjct: 68  ADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRYTEAK 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L  ++++ VDF   Y++   EPVV PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 128 MAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A   LI++P+ ++E+L+E+I GPDFPTGGII+  +  I  +Y  GRG   +R+R
Sbjct: 188 LGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIM-GKAGIRAAYATGRGKIILRSR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+ +G  CI++ EIP+ ++K RL++ I +L+  KRI  L  IRDES +D   V+  
Sbjct: 247 THFEEI-KGRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRVVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +   P++++  +F L+ ++    + M  L  G  P+++ L  +L+ +L  + +V+ RR
Sbjct: 306 LKKDAMPEIVLNKLFALTQLQDTVGIIMLALVNGE-PKILTLKQMLQHYLDFQVDVIQRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF----------- 421
           + + ++    R  IL+G ++A   IDE+IAIIR+     + K  M+ RF           
Sbjct: 365 TRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDVDMSALLDR 424

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                          L+E Q +AI+ +RL  L  LE  +I  EL  LL +    + +L  
Sbjct: 425 AQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDILAD 484

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             + +  I  ++  +++ FS       RRT+   VS        + +I +E   V ++N 
Sbjct: 485 VNRVYGIIIDDLNTIRKKFSD-----DRRTSIENVSG---EVDIEDLIPEEDCVVTLTNN 536

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                ++ +  +E D +       + D +L +S  G  Y L    
Sbjct: 537 GYIKRMPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYE 596

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +  G     G  +  LI L+  + I        +     + +V+ KG       S     
Sbjct: 597 VPDGSKASRGFNLINLIPLSEGEKIAAMIKTTDFSEDKYITIVTKKGKIKRSNLSLYKNV 656

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
            + G   + +   +++  V    G+  + V   N   +    ++   MSR   GVR    
Sbjct: 657 RKNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMSRSAHGVRAIKL 716

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           ++G    V   ++ EG T +      Y +        +  RGG G    K     G    
Sbjct: 717 REGDYV-VSIARVREGATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCG 775



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 15/221 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSL 551
              E  +           E + IT+ ++ +G I+              L A+   EGD +
Sbjct: 614 PLSEGEKIAAMIKTTDFSEDKYITI-VTKKGKIKRSNLSLYKNVRKNGLIAIGLDEGDEI 672

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                     +I + + +G A  +      S       ++  I L     +V+       
Sbjct: 673 AGVRMTDGNAQIFVATRNGMAIRIEENKGRSMSRSAHGVRA-IKLREGDYVVSIARVREG 731

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             LL V+  G     E        R G        ++    V  +      D + +V  +
Sbjct: 732 ATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSD 791

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             ++      I  M R  KGVR+    +G  + V+ F   E
Sbjct: 792 GIIIRILASDIRVMGRIAKGVRVMRVNEG--AQVVAFTRAE 830



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD--GKAYTLPAGNLLSGRGHGE 588
           RS+   +  + A+  +EGD +           +L ++ +  GK   L +  + +  G+G 
Sbjct: 702 RSMSRSAHGVRAIKLREGDYVVSIARVREGATLLTVTENGYGKRTELDSYRIQNRGGYG- 760

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSS 646
            +      +    +    + D    +++VSS G    +  S+I  +    KG   ++V+ 
Sbjct: 761 -LTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNE 819

Query: 647 EEKMKLVVKVTGDHVA 662
             ++    +   D  A
Sbjct: 820 GAQVVAFTRAEHDDNA 835


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 218/729 (29%), Positives = 372/729 (51%), Gaps = 37/729 (5%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            +P    I+  M  +G      +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+  RY
Sbjct: 1   MEPKGFEILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            ++ GQGN+G++DGDSAAA RYTE R+ ++ E ++Q +D++ VD +  +++   EP V P
Sbjct: 61  MVVDGQGNYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           ++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A I+N +I IE+L+ Y+  PDFPTG
Sbjct: 121 TRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTG 180

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           G  +     + E+Y  GRG   +RAR  +E        IV+TEIPY V K+ LI+ IA+L
Sbjct: 181 G-YIYGMSGVREAYLTGRGRVIMRARAEIETSST-HDKIVITEIPYGVNKAELIKNIADL 238

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
              K+I  + +  DES  +   ++    R  +  +++  ++ ++ ++T F +N   L   
Sbjct: 239 ANDKKIEGISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALV-H 297

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P+++ L  ++K ++ HR EV+ RR+ + ++    R  IL+GL+IA  NIDE+I IIR 
Sbjct: 298 GRPRLLNLKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRA 357

Query: 410 EDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              P   +   + RF LTE Q  AI+ +RLR L  L + Q+ +E + ++      + +L+
Sbjct: 358 AKTPNDAIVGLIERFQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKMIAYYEEILS 417

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +     I  E+ EVK  +        RR+   E+  + +    +     + + + IS+
Sbjct: 418 NDELCRKVITDELIEVKAKYGDE-----RRS---EIVYSSEEFNPEDFYADDEMIITISH 469

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+              V       ++ D ++    A   + ++  +  GK Y L   
Sbjct: 470 MGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVY 529

Query: 579 NLLSGR--GHGEAIQLLIDLNHNQDIVTAF--------VYDSTCKLLVVSSKGNAFIVEE 628
            +  G     G AIQ L++++ +  +             + ++  +L  +  G       
Sbjct: 530 EIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLL 589

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            +     + G   + +  ++++  V    GD  + +   N + + F    +  M R   G
Sbjct: 590 EQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATG 649

Query: 687 VRLQSYKDGGISDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           VR  +  + G  +V   IC K  E  T +  + + Y +  +        RGG G      
Sbjct: 650 VRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNI 709

Query: 744 FPRSGKFLS 752
             ++GK ++
Sbjct: 710 TDKTGKLVT 718



 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  +  G I+        +     ++A+  +E D +      +  + I++ + +G+A  
Sbjct: 575 VLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIR 634

Query: 575 L--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI 631
               A  ++     G     L +   ++ +    + D   + ++VVS +G     +  + 
Sbjct: 635 FHESAVRVMGRTATGVRGMTLDEDGQDEVVGMICIKDPEAETIMVVSEQGYGKRSDIEDY 694

Query: 632 IANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-G 686
               R GK    ++  +K   +  +  VT D  + ++ ++   +   +  +  M R   G
Sbjct: 695 RKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQG 754

Query: 687 VRLQSYK 693
           VRL + +
Sbjct: 755 VRLINLE 761


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/772 (32%), Positives = 386/772 (50%), Gaps = 62/772 (8%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +  IS+   + E  ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G  +   ++KSAR VGEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDS AA RYTEAR+ + +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP+HN  E+ +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DI
Sbjct: 240 AFATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADI 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L
Sbjct: 300 RDESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLAL-DGGKPRLMGLKDVL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------ 409
           + ++A R EV+ RRS F +     R  IL GL+IA  NID +IA+IR             
Sbjct: 359 EAFIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALM 418

Query: 410 ----------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                            D    V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  
Sbjct: 419 AAQWNAADVEPLLALIHDDGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +     ++  ++ S  ++   +  E+   +   +             E++        ++
Sbjct: 479 VAQRINELLEIIGSHVRRMEVLRDELSVARAEIATP--------RMTEIADYAGDQDDES 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE   + V I+  G+I+                 +    +  D +  + +AHT   ++ 
Sbjct: 531 LIEPGQMVVTITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMF 590

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ GK Y      L        G A+  L+    +  I                 L+  
Sbjct: 591 FSSGGKVYRQKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           ++ GN      S+       G   +K+   + +  V     G  V +     + + F I 
Sbjct: 651 TASGNVRRNRLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQIT 710

Query: 677 Q--IPEM-SRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +     RG  GVR     +G    VI   +   +        +Y R  N
Sbjct: 711 DDTLRVFAGRGSSGVRGIRLAEG--DRVISLAVLNHVEATVEERSAYLRMAN 760



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVA 662
           ++   LL+VS  G        +   + R G+    +        +++   + V  G  V 
Sbjct: 805 EAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNMTFSANKRGKEVAATLPVLEGTDVM 864

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +V +  +L+   +DQ+  M+R   GV L    D 
Sbjct: 865 LVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDD 898


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 242/825 (29%), Positives = 391/825 (47%), Gaps = 119/825 (14%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           RD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  +ALI++P I +
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIP
Sbjct: 181 PELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + 
Sbjct: 240 YQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL 
Sbjct: 300 LQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLA 358

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVS-----------------------------RFSLTE 425
           IA  NIDE+I +IR    P+                                   ++L+E
Sbjct: 359 IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 419 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDE 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   E+         + +I +E + V +S+ G+I+          +   
Sbjct: 479 FGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
              S +  ++ D +      +T   +L  S+ G  Y      L  G     G+A+  ++ 
Sbjct: 531 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 590

Query: 596 LNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEE 648
           L   + I T               ++  +++G     + S+ +   R GK  +K+    +
Sbjct: 591 LEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGD 650

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI 705
           ++  V   T  D V +     + + FS+D +     R   GVR  +  +G    +I   I
Sbjct: 651 EILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEG--DRIISMTI 708

Query: 706 ----------------------------CEGLTWI------------------------- 712
                                        E +  +                         
Sbjct: 709 VGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFV 768

Query: 713 -DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
              + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 769 LTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGELVAA 812



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 78/291 (26%), Gaps = 75/291 (25%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   + +             +  + RG +R  K             A
Sbjct: 590 PLEPGERITTILPLPEDEASWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 642

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L     
Sbjct: 643 MKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDR 702

Query: 602 IVT-----------------------------------AFVYDS---------------- 610
           I++                                   A V +                 
Sbjct: 703 IISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELK 762

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 763 AREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIM 822

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDVICFKICEGLTW 711
           +V +  +L+   +  I   SR  KGV +  + KD  +  V      E    
Sbjct: 823 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISEPEEDDT 873


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 387/756 (51%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+ +  + LIDNP+ +I  LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++      +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L  G  P+++ +   L  +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGA-PKLLNMKQALTVYLEHQL 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           +VL R++ F ++    R  IL GLLIA LNIDE+IAII+           +  RF L E 
Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L A  E    +L   + Q   I  ++ ++ E F
Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    + +I +E + + +S  G+++              V
Sbjct: 490 GDP-----RRSEIL--YGISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G     G     LI +
Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           + ++ I      +          +  G       SE       GK  +     + +  V+
Sbjct: 603 DKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           + +G D + +      ++ F  D +  +SR   GV   +       + +      G   +
Sbjct: 663 RTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   ++G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTG 757



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 13/207 (6%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              +  G I+                A+ FKE D L   +     D I + ST G     
Sbjct: 623 FFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRF 682

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               +         +   I+LN  + +       +   LL V   G   +    +     
Sbjct: 683 HEDTVRPLSRAAMGVLG-INLNQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTK 741

Query: 636 RKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R  K    +     +   +        + + ++    K++  S++Q+ E  +   GV+L 
Sbjct: 742 RNAKGVKTLRVTAKTGPVVTTTTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLI 801

Query: 691 SYKD-GGISDVICFKICEGLTWIDSAG 716
             K+   +  V  FK  E +    +  
Sbjct: 802 KLKEKERLETVTIFKKEEAIKTTTATE 828


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/747 (38%), Positives = 421/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSENDLLGW-----LGKRGGVGS 738
           R     E  L G      +GKR   G 
Sbjct: 730 RGGKAQEEALAGRALEPHVGKRARKGR 756


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/747 (36%), Positives = 432/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + VE        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYSVE-----KHEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++    + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLAELPNLNKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/747 (38%), Positives = 423/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLA 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID++I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIRESDEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 TFGLTDRQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANDSAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S RGW+R+LK H +D
Sbjct: 500 E------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVTVVVSQRGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +A  FK GDSL  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAAFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +   LL+ SS G  FI +  ++++  + GK F+ +         + V   
Sbjct: 611 SHLMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +  +G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVTLMAL-DDKETLVQALAIEPAGVVLVGSG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     E  L        +GKR   G 
Sbjct: 730 RGGKVQEETLSYAGLAPHIGKRARKGR 756


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/766 (37%), Positives = 428/766 (55%), Gaps = 38/766 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  +       +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI  A
Sbjct: 1   MDDDNTLDLFNEPPADGDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP V P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI +P++S  +L++++ GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVASAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------ 288
            +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E            
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKT 300

Query: 289 ------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + L++ +RDES +D  VR+V  PK+  +D    + ++   + +E+  P
Sbjct: 301 LTPEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +LNI
Sbjct: 361 LNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  +++ F LT+ Q + IL +RLR L +LE+ +I+ EL  L  EK K
Sbjct: 421 DEVIRIIRESDEPKVALMAAFGLTDRQAEDILEIRLRQLARLEKIKIEKELAELREEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S      Q+  EI       + +   G  R T  +  +       +A +  EP+
Sbjct: 481 LEELLGSEPAMKRQLIKEIE------ADAKQYGDERRTLIQQEKRA---TFEARVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ + +       + +  D   VA +    +LL+F +D++  +   G+GV L +  D   
Sbjct: 652 FMTIDAGAAPLAPMPMLPDAAQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMAL-DDKE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGS 738
           + V    I +    +    R     E      +L   +GKR   G 
Sbjct: 711 TLVQALAINKAGVMLIGTRRGGRVDEEKLAGAELAAHVGKRARKGR 756


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 236/792 (29%), Positives = 395/792 (49%), Gaps = 66/792 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 10  SDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 70  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYT 129

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VD+ D ++    EP V P++ P+LL NG+SGIAVGMAT+I
Sbjct: 130 ESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATNI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+    LALI +PE+    LL  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 190 PPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQIL-GRRGIRETYTTGRGSVT 248

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 249 MRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGISDIRDESDR 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L     P ++ L  +L+ +L  
Sbjct: 309 DGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSE-PVLLTLRRMLQVFLEF 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR   +    +  +  R  L+
Sbjct: 368 RIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARLQLQERHGLS 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E
Sbjct: 428 EIQSDAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIEAELIQLRE 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RRT   ++    +      +I  E   V+++  G+++ +     + ++  
Sbjct: 488 RYPSE-----RRTEILDLEGGLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATSRG 539

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++++ +  +  D +LL S  G  Y +PA  +   S    G  +  L+
Sbjct: 540 TRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYRVPVGSRGAKGTPVVQLL 599

Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I   V    +D   +LL+++S G       S        G   + +   + ++
Sbjct: 600 PIPREEQITSLVAVSAFDDDVQLLMLTSGGYIKRTRLSAFANIRSNGLIAISLEDGDALR 659

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI-- 705
                + GD V +       + F +   ++  + R  +GVR  + + G   +++   +  
Sbjct: 660 WARLALPGDSVLIGSLKGMTIHFRLTDGELRPLGRTARGVRAMALRPG--DELVSMDVLP 717

Query: 706 --------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                                      +G   + ++     +        L +R G+G  
Sbjct: 718 AELADQVASSSASENEEEDAPEAGESSDGPWVLVASASGLGKRVPVTQFRLQRRAGLGLR 777

Query: 740 VPKGFPRSGKFL 751
             K F R G  L
Sbjct: 778 AIK-FRRDGDVL 788



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 42/248 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + +  +  + +   +++++ G+I+  +  +        L A+  ++GD+L+ 
Sbjct: 601 IPREEQITSLVAVSAFDDDVQLLMLTSGGYIKRTRLSAFANIRSNGLIAISLEDGDALRW 660

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
           A  A   D +L+ S  G    + L  G L         ++ +  L    ++V+  V  + 
Sbjct: 661 ARLALPGDSVLIGSLKGMTIHFRLTDGELRPLGRTARGVRAMA-LRPGDELVSMDVLPAE 719

Query: 612 ---------------------------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
                                        +LV S+ G    V  ++     R G     +
Sbjct: 720 LADQVASSSASENEEEDAPEAGESSDGPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAI 779

Query: 645 S-SEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-IS 698
               +   LV       G+ + +V E   ++    D IP+ SR   GVRLQ    G  +S
Sbjct: 780 KFRRDGDVLVGLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLS 839

Query: 699 DVICFKIC 706
           +V+     
Sbjct: 840 EVVLVPPA 847


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/824 (31%), Positives = 429/824 (52%), Gaps = 91/824 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN    + +  + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+  
Sbjct: 3   SNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGS 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG+IDGD AAA
Sbjct: 63  RQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT +AE +L+ +D++ VDF   Y+E  +EP V P++ PNLL NG+SGIAVGMA
Sbjct: 123 MRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H++ E+    L L++N   S+E+++  I GPDFPTGGI +  ++ I+E+Y+ GRG
Sbjct: 183 TNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGI-IYGKKGIIEAYKTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             ++RA+  +E+       IV+ E+PYQ  K+RLIE+IA+L+  K+I  + ++RDES  D
Sbjct: 242 RVKIRAKTHIEK-KASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRD 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + ME  F + M  +  G+ P++  L  +LK +L HR
Sbjct: 301 GIRVVIELKRDAMSEIVLNNLFKQTTMEATFGVIMLAI-DGKEPKIFTLIELLKLFLNHR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+I +IRN       +  ++SRF L+E
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLSE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL  L  LE  +I+ EL  +LAE +++D++L S +     I  E+ E+K+ 
Sbjct: 420 AQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKDK 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F              E+    +    + +I  E + V I++RG+I+          K   
Sbjct: 480 FKCP--------RITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRVPSKTYEKQKRGG 531

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   + D ++    ++T D ++ ++  G+ Y L    +   S    G+A+  LI 
Sbjct: 532 KGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQ 591

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I+       +D +  L+  +  G       SE       G   + +  ++ +  
Sbjct: 592 LGADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFKNIRSLGIRAISLDEDDTLVT 651

Query: 653 VV---------------KVTGDHV------------------------------------ 661
            +                ++GD +                                    
Sbjct: 652 ALIAPNSAEEMQNYKGGALSGDDLDGGEAEEILEQTEQDILEGSEDEISDEISQDEGAQD 711

Query: 662 ----------AVVGENRKL-LIFSIDQIPEMSR-GKGVRLQSYKDGGISDV-ICFKICEG 708
                       +   + + L F++++I +M R  +GV+   +K+ G   +   F + + 
Sbjct: 712 GEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGAAFILSDM 771

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +  + +   +        L  RGG G +  K   R+G+ + 
Sbjct: 772 QEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIG 815



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 558 HTTDRILLL-STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLL 615
            T + +L + +  G         +         ++ +       +++  AF+     ++L
Sbjct: 716 STNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGAAFILSDMQEIL 775

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLL 671
            VS KG       SE     R GK  + +       ++  VV V  +  +  +  + K++
Sbjct: 776 SVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTTSGKMI 835

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
              +  I +  R   GV + + +   +  +  
Sbjct: 836 RVDMQSIRKAGRNTSGVIVVNVEGDDVVSIAT 867



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 28/264 (10%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIAL 555
                 A +     +     V  +  G ++           S+ + A+   E D+L  AL
Sbjct: 594 ADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTNLSEFKNIRSLGIRAISLDEDDTLVTAL 653

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN--QDIVTAFVYDSTCK 613
            A  +   +    + K   L   +L  G       Q   D+      +I      D   +
Sbjct: 654 IAPNSAEEM---QNYKGGALSGDDLDGGEAEEILEQTEQDILEGSEDEISDEISQDEGAQ 710

Query: 614 -----------LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
                      L + + KG       ++I  +    +G   +K     +++     +  D
Sbjct: 711 DGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKEKGDEVIGAAFILSD 770

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +  V +       +  +    +RG KGV      +     +    + E +  +    
Sbjct: 771 MQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTT 830

Query: 717 RSYNRSENDLLGWLGKRGGVGSLV 740
                  +        R   G +V
Sbjct: 831 SGKMIRVDMQSIRKAGRNTSGVIV 854


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 277/748 (37%), Positives = 434/748 (58%), Gaps = 19/748 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +E++L  + +  V+++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP  S  KL EYI GPD PT   I+ S++ +++    GRG
Sbjct: 182 TDIPPHNLREVIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            +R+RA + VE        I++TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRAVYTVE-----KNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHV 296

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D D +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDADTVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIG 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+E + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED PK V++  F + E 
Sbjct: 357 IRKETVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPKAVLIQTFKIDET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KL+E +I+ E D L A    I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLQEMEIRQEQDELSARAALIREQLANPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                   RR+   E         +Q +I  EP+TV++S  GWIRS K   VD   L+++
Sbjct: 477 GDE-----RRSPIVEREG-AVQMREQDLIPAEPVTVILSEAGWIRSAKGADVDAEKLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L   +L S RG GE +   +   +    +   
Sbjct: 531 AGDQYLSHASGKSNQRVYILDETGRSYALAINSLPSARGLGEPLSSKLSPANGVSFIQIL 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664
           V +   +++ +SSKG  F  +  ++  N + GK FL +    K  L + V  D  H+A++
Sbjct: 591 VEEDDQEIIAISSKGYGFKTQAKQLDTNAKAGKAFLSIPEGGK-ALPLLVNPDCSHLALL 649

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +  +LL+  + ++P +++GKG +L   + D  +  +    + E +  I +  +  N   
Sbjct: 650 TDTGRLLVLPVSELPSLNKGKGNKLIQLEQDEQLLSMTTLNLNEIIQVI-AGQKILNIKP 708

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            DL  +LGKR   G L+P+G+ +  + L
Sbjct: 709 GDLDKYLGKRASKGQLLPRGYQKVNRLL 736


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 273/747 (36%), Positives = 432/747 (57%), Gaps = 17/747 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S  KL EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 242 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GW+R+ K   VD   L+++
Sbjct: 477 ------GDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         T  R+  L   G++Y LP  NL S RG G+ +   +        +  +
Sbjct: 531 AGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVY 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665
           + D   +L+  SS G  F  +  ++  N + GKTFL V  + K + L+      H+AV+ 
Sbjct: 591 LDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLS 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +LLI  + ++P +++GKG +L   +    I  +    + E +  + +  +      +
Sbjct: 651 SAGRLLILDLVELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV-AGQQHLKLKGD 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           DL  ++GKR   G L+P+G+ ++ K L
Sbjct: 710 DLQKYMGKRASKGQLLPRGYQKANKLL 736


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 415/765 (54%), Gaps = 35/765 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L  +N++ +++   L+  YL Y++S I  RA+PD+RDG KPVHRRI++AM ++ L  
Sbjct: 2   SNLLHNDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSH 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GA FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG++DGD+AAA
Sbjct: 62  GAKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARMT+ A  +L+ ++++ V+  D Y+    EP V P++ PNLL NG+SGIAVGMA
Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN QEI     AL+ NP I + +L+E+I  PDFPTGG I   ++ I+++Y  GRG
Sbjct: 182 TNIPPHNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIF-GKKGIMDAYATGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  +E+ G     I++ E+PYQV K+RLIE IA L+  K I  + +IRDES  +
Sbjct: 241 RIKVRAKTHIEKKGN-KDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDRE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +    ++++ ++F  + M+  F + M  +     P++  +  ILK ++ HR
Sbjct: 300 GIRVVIELKKDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQE-PRIFGIIDILKHFINHR 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + ++ RR+ F ++    R  IL+GL  A   IDEII +I++    ++ +  +VS F  + 
Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSEFDFSV 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  +I+++RL  L  LE  +I++EL  LL     ++S+L S +     I  E  E+  I
Sbjct: 419 IQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEEVLHGIIDQEFDELLTI 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           ++       RRT    V         + +I  EP+ V I++RG+I+          K   
Sbjct: 479 YTD-----VRRTD---VEDDYDDIDVEDLIPNEPMVVTITHRGYIKRVPLAQYEKQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
               A+   E D ++     +T D +L ++  G+ + L    +   S    G+A+  L++
Sbjct: 531 KGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRTAKGKAVVNLLN 590

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  ++ I +      +     L+  + KG       SE       G   + +  ++ +  
Sbjct: 591 LVADEQIQSINPTTDFSEEKSLVFFTKKGVVKRTNLSEFSNIRSNGVKAILLDDDDSIIT 650

Query: 653 VVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---DGGISDVICFKIC 706
                    ++ ++ +  + + F +++  +  R  +GVR   +K   D  +   I     
Sbjct: 651 AKIADKSIKYLFIMTKMSQCIKFDMEKTRDQGRNTRGVRGIKFKHAEDEVVDANIIANDE 710

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +  +  + +   +  +     L  RGG G +  K   ++GK++
Sbjct: 711 QEILVV--SEKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGKYV 753



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 531 RSLKSHSVDLSALHFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHG 587
           R    ++  +  + FK  E + +   + A+    IL++S  G      AG   L+ RG  
Sbjct: 679 RDQGRNTRGVRGIKFKHAEDEVVDANIIANDEQEILVVSEKGIGKRTDAGEYRLTNRGGS 738

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I + +     + +V   + D    ++ ++  G    V+   I  ++R       V   
Sbjct: 739 GVIAMKMTAKTGKYVVGCLMVDEEMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK-G 797

Query: 648 EKMKLVVKV 656
           + +  V + 
Sbjct: 798 DDVASVSRC 806


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 260/843 (30%), Positives = 403/843 (47%), Gaps = 112/843 (13%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                E N+  +S++  ++  YL YA+S I  RA+PD+RDG KPVHRR+++AM E G  +
Sbjct: 3   EQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHY 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F  R PL+ GQGNFG++DGD+AAA
Sbjct: 63  NKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+ +VA  +L+ +++D VDF+  Y+  + EP V P+ FPNLL NGT GIAVGMA
Sbjct: 123 MRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A  A IDN  I+I +L+E + GPDFPTGG I+ +   I  +Y  GRG
Sbjct: 183 TNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VR +  +E        I++TEIP+ V K+ L+EKIAEL+  KRI  +  IRDES + 
Sbjct: 242 KIIVRGKTDIE-SDSLKHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNKS 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    +  + DL++  ++  + ++T F + M  L    +P+ M L  I+  +   R
Sbjct: 301 GIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLAL-DQGIPKTMTLKDIIVAFTNFR 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS--- 422
            EV+ +R+ F +     +  IL G++IA  NIDE+I IIR   N ++ K  +++R     
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419

Query: 423 ----------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                                 LTE Q  +IL LRL+ L   E  +++ EL+NL+ E + 
Sbjct: 420 DVYDLVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKA 479

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +L S  +    +  E+ ++KE FS +      R T  E    ++    + +I +E +
Sbjct: 480 YLEILGSRDKLLETMKFELNQIKEQFSTA------RLTTIENQEFEQDI--EDLIPEEEV 531

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V ++  G+I+          K           +  D +      +T   IL  S  G+ 
Sbjct: 532 VVTVTLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQV 591

Query: 573 YTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST-------CKLLVVSSKGNA 623
           Y L    L  G     G  I  LI +  N+ I       +          ++  +  GN 
Sbjct: 592 YNLKVYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNI 651

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-M 681
              + S+       GK  +++   + +  V     + HV +  +N K + F +  +    
Sbjct: 652 RRNDLSDFKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFK 711

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLT------------------------------ 710
           SR   GV+       G   VI   I +G+                               
Sbjct: 712 SRTSDGVKAIKL--AGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSI 769

Query: 711 ---------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                 +  +   Y +  +     + KRGG G        ++GK
Sbjct: 770 DLSKYNLTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVSSKTGK 829

Query: 750 FLS 752
            +S
Sbjct: 830 VVS 832



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/533 (14%), Positives = 149/533 (27%), Gaps = 114/533 (21%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            E+I  + I LL   RD++   V I++   N      ++  S               NV 
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +  + +++    ILKE           +S   ++           +     N+ + I  
Sbjct: 420 DVYDLVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKA 479

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE------- 459
                  +  ++       NQ+          L  +E  + + ++++L+ E+E       
Sbjct: 480 YLEILGSRDKLLETMKFELNQIKE--QFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTL 537

Query: 460 --KIDSL---------------LNSGKQQWNQI--------------------ACEIREV 482
              I  +               + S  Q  + I                       ++  
Sbjct: 538 AGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVY 597

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP------ITVVISNRGWIRSLKSH 536
           K         GR       +   +  T    M  +          +  +  G IR     
Sbjct: 598 KLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLS 657

Query: 537 SVDLSALHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                A + K      EGDSL         + +LL + +GKA   P  +L   +      
Sbjct: 658 DFKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDG 717

Query: 591 QLLIDLNHNQDIVTAFVY------------------------------------------ 608
              I L  N  +++  +                                           
Sbjct: 718 VKAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSIDLSKYNLT 777

Query: 609 --------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---- 656
                    +   +L VS  G        E     R GK    ++   K   VV V    
Sbjct: 778 EDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVSSKTGKVVSVLPAC 837

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL-QSYKDGGISDVICFKICE 707
             + + ++  + KL+   ++ +  + R   GV L ++ KD  +  +   K  +
Sbjct: 838 QDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTD 890


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 234/786 (29%), Positives = 392/786 (49%), Gaps = 68/786 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQIL-GRTGIRETYLSGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    VE +          +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G    ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPI-LLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             S       RRT   +++   +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RHSVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G AY LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI-- 705
            V   + GD V +  +    + F +   ++  + R  +GVR  + + G    ++   +  
Sbjct: 665 WVRLSIPGDSVLIGSKAGMTIHFRLADGELRPLGRTARGVRSMNLRKG--DSLVSMDVLP 722

Query: 706 -----------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                                         EG   + ++     +        L KR G+
Sbjct: 723 AELADQIAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGM 782

Query: 737 GSLVPK 742
           G    K
Sbjct: 783 GLRAMK 788



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVA 662
           V      +LV S+ G    V  ++     R G     +K  ++ +++  +  +  G+ + 
Sbjct: 750 VAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELL 809

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +V E   ++  S D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 810 LVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 858



 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
            +L+ S  G    +P       +  G  ++ +       ++V   V  +  +LL+VS KG
Sbjct: 756 WVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELLLVSEKG 815

Query: 622 NAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
                    I   +R   G    ++   +++  VV V
Sbjct: 816 VIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLV 852


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 270/746 (36%), Positives = 427/746 (57%), Gaps = 16/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKST 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +  VD++D ++    EP+  P++ PN+L NGT GIAVGMA
Sbjct: 122 MRYTEAKLSAYSELLLSELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NPE + EKL EYI  PD PT   I+  ++ +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R RA + +         IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRARAVYHI-----DKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHR 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D   +M  +F  +D+ET + +N+N++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+  + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 357 IRKTTVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREEDQPKPVLMQHFNIDEI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E + L A    I   L + +   N I  E++E  + F
Sbjct: 417 QAEAILELKLRHLAKLEEMEIRREQEELEARAAVIREQLGNPESLKNLIINELKEDAKKF 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +            +Q ++  E +TVV+S  GWIRS K   VD   L+++
Sbjct: 477 ------GDDRRSPIVQREEAVQIREQDLLPAETVTVVLSEAGWIRSAKG-EVDAENLNYR 529

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD  +      +  R+ +L   G++Y L  GNL S RG GE +   +   +    +  +
Sbjct: 530 AGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLPSARGLGEPLSSKLSPANGVSFIQVY 589

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
           + D   +L+ VS  G  F  +  ++  N + GK FL V    K   ++ +    H+A++ 
Sbjct: 590 INDEESELIAVSDAGYGFKTQTKQLDTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLS 649

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            + +LLI  + ++P +++GKG +L    D      +       +  + +  +      +D
Sbjct: 650 SSGRLLIVDLSELPILNKGKGNKLIQLDDKDQILSMTLLSLNEIIQVVAGQQHLKIKGDD 709

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ + L
Sbjct: 710 LQKYMGKRATKGQLLPRGYQKANRLL 735


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 249/735 (33%), Positives = 374/735 (50%), Gaps = 61/735 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR V
Sbjct: 1   MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + 
Sbjct: 61  GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L  ++ D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+
Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LA+I NP I +++L++ I GPDFPTGGII+  R  I  +Y  GRG   VRAR  +E
Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ +    I++TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R 
Sbjct: 240 EIRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD+++  ++  + ++T F  NM  L  G+ P+ M L  IL+ +L  R EV+ RR+ F 
Sbjct: 300 ATPDVVLNQLYRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------- 417
           +     R  +L GL++A  NIDE+IA+IR                               
Sbjct: 359 LNKARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHD 418

Query: 418 ------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                   +  LTE Q   IL LRL+ L  LE  +I+ EL  +  +  ++ +++ S  ++
Sbjct: 419 EGNVIIDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRR 478

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              +  E+   +   +             E+S A      +++IE   + V I+  G+I+
Sbjct: 479 MEVMREELLAARAEVATP--------RVTEISDALGDQTDESLIEPGQMVVTITRDGFIK 530

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                            +A   +  D +  + +AHT   ++  S+ GKAY +   +L   
Sbjct: 531 RTPLEVFRSQNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEA 590

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANT 635
                G A+  L+       I                 L   ++ GN      S+     
Sbjct: 591 APTAKGRALVNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIR 650

Query: 636 RKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG-KGVRLQ 690
             G   +K+   + +  V     G  V +  +N + + F I    +     RG  GVR  
Sbjct: 651 ASGLIAMKLDEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGI 710

Query: 691 SYKDGGISDVICFKI 705
              +G    VI   I
Sbjct: 711 RLGEG--DAVISLCI 723



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKVTGDHVAVVGENRKL 670
           V+  G        +   + R G+    +        +E +  +  + G  V +V +  +L
Sbjct: 792 VTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRL 851

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +   + Q+  MSR   GV L    D   + +  F + E  T
Sbjct: 852 IRLPVSQVRVMSRQASGVTLFRLND-TETVICVFPVLEDDT 891


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 266/752 (35%), Positives = 415/752 (55%), Gaps = 41/752 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E                     A  + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL++       +  
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIK 498

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI         +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H 
Sbjct: 499 EIE------GDAKQYGDDRRTLIETAERA---VLETKVVDEPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               IV      S  + L+ + +G  F    S++ +  R GK F+ +   +++   V + 
Sbjct: 610 AGTRIVHTIAAASDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                +A++    K L+F +D++  +   G+G  L         D     +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLDTADKLD---QTVPIGAAGLRA 726

Query: 715 AGRSYNRSEND------LLGWLGKRGGVGSLV 740
           AG   N+   D      L  ++GKR   G  +
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 287/765 (37%), Positives = 429/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFASSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ LI NP++S  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIRESDEPKSALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D ++  FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPASFSFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F   +  +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYFAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSY-----NRSENDLLGWLGKRGGVGS 738
            V    I      +   GR         S   L   +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAMDETLSYAGLAPHVGKRARKGR 756


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/755 (32%), Positives = 387/755 (51%), Gaps = 65/755 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D +     + +    +VS+   +   YL YA+S I  RAIPDLRDG KPVHRRI+ AM
Sbjct: 10  SDDEMRPERPVYDGP--SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAM 67

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G     +++KSAR VG+V+G+ HPHGD ++YD+LVR+AQ F    PL+ GQGNFG++
Sbjct: 68  HETGNTHDKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 127

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+ AA RYTE RM + A  +L  +D+D V+++D Y+ +  EP V P++FPN+L NG  
Sbjct: 128 DGDNPAAMRYTEVRMDKPAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAG 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A LALI+ P+++ E+L++Y+ GPDFPTGGI++  R    +
Sbjct: 188 GIAVGMATNIPPHNLGEVIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRTGARK 246

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  VEE+ +  W IVV EIPYQV K+ +IEKIAE +  K+I  +  +
Sbjct: 247 AYLEGRGSVIIRAKTRVEEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHV 306

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           +DES  +   V+    R    +++M  ++  + ++T F  NM  L+ G  P+ + L   L
Sbjct: 307 QDESDRNGVRVVVELKRDATAEVVMNQLYRFTPLQTYFGCNMLALN-GGRPEQLTLRKFL 365

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---- 417
             ++  R EV+ RR+++ ++    R  +L GL +A  NIDE++A IR+            
Sbjct: 366 TYFIDFREEVVARRTAYLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLM 425

Query: 418 -------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                       ++L+E Q  AIL+LRL+ L ++   ++  EL+
Sbjct: 426 TRRWPAQDILPYIALIDDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELE 485

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + ++   +L S  +  + I+ E+REV+E+F+       RRT   E+         +
Sbjct: 486 ELAGKIKEYLDILGSRDRIMSIISDELREVRELFAVP-----RRT---EIVDWSGDMEDE 537

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V ++  G+I+                      KE D +     A+T  ++L
Sbjct: 538 DLIAREDMVVTVTQGGYIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLL 597

Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLV 616
             +TDG AY L    L  G     G+AI  ++ +     I      D   K      ++ 
Sbjct: 598 FFTTDGMAYKLKTWRLPQGGRTSKGKAIINILPIPQGVSIAAILPIDRDEKDWSELQIVF 657

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLI 672
            +S G       S+       GK  +K   E      +   +    D V +V  + + + 
Sbjct: 658 ATSAGTVRRNALSDFTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIR 717

Query: 673 FSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI 705
           F    +    SR   GVR       G   V+   +
Sbjct: 718 FPSTDVRVFNSRSSVGVRGVRLT--GDDKVVSMSV 750



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%)

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+     G+    F +          +     + + +V ++   IR             S
Sbjct: 672 FTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSTDVRVFNSRSS 731

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           V +  +     D +               ++D +   L     ++G      I+      
Sbjct: 732 VGVRGVRLTGDDKVVSMSVIR----HFNATSDERVAYLKMRRAMAGLADDAEIEEEETTG 787

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLV 653
            + +I  A +  +   +L ++++G+  +    +     R G         +     +   
Sbjct: 788 ESVEIDYAKMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAMDKAMRGGPIVASF 847

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
                D + +     + +   ++ I   SR   GV++ +   G     + +   +G
Sbjct: 848 PVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQG 903


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 234/775 (30%), Positives = 392/775 (50%), Gaps = 58/775 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 14  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYTE+R
Sbjct: 74  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  +    +L+ ++ + VD+ D ++    EP V PS+ P LL NG++GIAVGMAT+IP H
Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    LALI+NPE+S ++L+  I GPDFPTGG I+  R  I E+Y  GRG   +R 
Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQIL-GRTGIKETYLSGRGSVTMRG 252

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              +E +          +++T +PYQ  K+ +IE+IAE++  K++  + DIRDES  D  
Sbjct: 253 VAAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGM 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++ L+ +++ F  +M  L  G    ++ L  +L+ +L  R E
Sbjct: 313 RIVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPI-LLTLRKMLEVFLDFRVE 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
            + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L++ Q
Sbjct: 372 TIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHGLSDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++ +  I  E+ ++++  +
Sbjct: 432 ADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLRDRHA 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546
                  RRT   E+           +I  E   V+++  G+++ +     + ++   + 
Sbjct: 492 IP-----RRT---EILDLGGGLDDIDLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG 543

Query: 547 -------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
                    +++K+ +  +  D +LL S  G +Y LPA  +   S    G  +  L+ + 
Sbjct: 544 KAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIP 603

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      ++    LL+++  G       S        G   + +   + +  V 
Sbjct: 604 REEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVR 663

Query: 655 K-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGGI---SDVICFKIC- 706
             V GD V +       + F +  D++  + R  +GVR  + +DG      DV+  ++  
Sbjct: 664 LAVPGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELAD 723

Query: 707 -------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                              +G   + ++     +        L KR G+G    K
Sbjct: 724 RVAQSSEDDSGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 778



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 39/242 (16%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   + L  +    +   ++++  G+I+  +  +        L A+  +EGD+L  
Sbjct: 602 IPREEMITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEEGDALTW 661

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A   D +L+ S  G    + L    L         ++ + +L     +V+  V    
Sbjct: 662 VRLAVPGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSM-NLRDGDALVSMDVLPVE 720

Query: 610 ----------------------STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVS 645
                                     +LV S+ G    V  ++     R G     +K  
Sbjct: 721 LADRVAQSSEDDSGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR 780

Query: 646 SEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVI 701
           +E    + ++V   G+ V +V E   ++  S D IP+ SR   GVRLQ    G  +S+V+
Sbjct: 781 TEADALVGLRVLGAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVV 840

Query: 702 CF 703
             
Sbjct: 841 LV 842


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 264/717 (36%), Positives = 426/717 (59%), Gaps = 22/717 (3%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +RA+P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++
Sbjct: 1   MDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           V +AQPF  RYPL+ GQGN+G +D   S AA RYTE+R++++AE++L  + +  VD++  
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           ++    EP   P++ P++L NGT+GIAVGMAT IP HN+ EI +AA+ L+DNP+ ++++L
Sbjct: 121 FDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
              + GPDFPT   I+  +E I + Y+LGRG  ++RA W  E+       IV+  +P+Q 
Sbjct: 181 STVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKED-----GEIVIRALPHQS 235

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDM 335
             S++I +IAE + AK++P++EDIRDE+  +  VRIVL P++  +D D +M  +F  +D+
Sbjct: 236 SPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTDL 295

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           E  + +NMN++ +   P V  L  IL EWL+ RR  + RR  +R+  +  R+ IL+GL+I
Sbjct: 296 EKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLMI 355

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A+LNIDE+I IIR+ED+PK  +++RF+L++ Q +AILNLRLR L KLEE+++++E   L 
Sbjct: 356 AFLNIDEVIHIIRHEDEPKAELMARFNLSDEQAEAILNLRLRHLAKLEEHELQAEQTELE 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E+  ++ +L S ++    +  EI++  + ++       RR+   E +   KA  +  M+
Sbjct: 416 KERSSLEEILGSERRLNTLLKKEIQQDAKTYASP-----RRSPLVERAE-AKAIAENEML 469

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             EP+TV++S  GW+R  K H +D   L +K GD      +  +    + + + G++Y L
Sbjct: 470 PTEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYAL 529

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L S R  GE +   + L     I    + +    LL+ S  G  FI + +++IA  
Sbjct: 530 DPLMLPSARSQGEPLTGKLTLPAGATIDQLLIENEDQPLLMASDAGYGFICKFADLIARN 589

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
           + GK  + +    K+   + +      +V      ++LIF    +PE+S+GKG ++ +  
Sbjct: 590 KAGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPELSKGKGNKIVTIP 649

Query: 694 DGGISD-----VICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                      V    I E  + +  S  R    +  DL  +  +RG  G+ +P+G 
Sbjct: 650 SANAKARSELLVRLLLIEENSSLVFHSGRRKIVLNPEDLQKFRAERGRKGTQLPRGL 706


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 265/752 (35%), Positives = 414/752 (55%), Gaps = 41/752 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM  MGL  GA   KSAR
Sbjct: 19  EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T
Sbjct: 79  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
             ++L+L  ++E  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++
Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI NP++  E+LL  + GPDF  GG I+     I + Y  GRG  + RARW 
Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLE 299
            EE+ RG W +VVTE+P      +++E+I E                     A  + LL+
Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L
Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  ++P+  +
Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LTE Q + IL +RLR L +LE  +I+ EL     E+ ++  LL++       +  
Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIK 498

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI         +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H 
Sbjct: 499 EIE------GDAKQYGDDRRTLIETAERA---VLETKVVDEPVTVIVSQKGWLRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D     FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL 
Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               IV         + L+ + +G  F    S++ +  R GK F+ +   +++   V + 
Sbjct: 610 AGTRIVHTIAAAPGSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLF 669

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                +A++    K L+F +D++  +   G+G  L         D     +  G   + +
Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLDTADKLD---QTVPIGAAGLRA 726

Query: 715 AGRSYNRSEND------LLGWLGKRGGVGSLV 740
           AG   N+   D      L  ++GKR   G  +
Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKRARKGRQL 758


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 255/769 (33%), Positives = 408/769 (53%), Gaps = 32/769 (4%)

Query: 6   ISNSNTLVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + N   +VEE    +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ M 
Sbjct: 1   MRNEEHIVEEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMGL     FKKSAR+VG+V+GK HPHGD SVYD+LVRLAQ F  RYP++  QGNFG+ID
Sbjct: 61  EMGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE +M+++ E +L  + +D VDF   Y++   EP V P+ FP +LANG+SG
Sbjct: 121 GDPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT++  HN+ EIC+A  A+I+NP+I +E L++YI GPDFP+G II   ++ I+++
Sbjct: 181 IAVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIIC-GQQGIIDA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  GRG    RAR+ +EE  RGS  I+ T+IPYQV K+ L++KI EL     +P +  +R
Sbjct: 240 FSTGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDELRRND-LPAISAVR 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   ++    +   P +++ ++F+ + +++ F +N   L  G  PQ++ L  IL 
Sbjct: 299 DESDREGIRIVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNG-RPQLLSLKEILV 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++ +R +V+ RR+ + +Q  + R  IL GL I   NIDE+I II+  +        +  
Sbjct: 358 HYINYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQK 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q DAI++++L  L  LE  +I  EL  L  +      LL   ++    +A E 
Sbjct: 418 AFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKDLLADRRKILGVVAQET 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
           RE+   +      G +R T  + +   + T  +  I+ E + VVISN+G+I+        
Sbjct: 478 RELAAKY------GDKRLTEIQRAEIGQ-TQVEDFIKNEEVVVVISNKGFIKRVVAEEYR 530

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEA 589
                   +        D ++    A T D ++ +S+ GKAY +    +  G     G +
Sbjct: 531 SQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPEGSKVSKGSS 590

Query: 590 IQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I+ LID+   ++I +   +        L +V+  G    V          +G   L +  
Sbjct: 591 IKQLIDITDGEEISSIINFTEFHDDQYLFMVTKHGVTKKVGLPAFRNAKSRGVRALFLDE 650

Query: 647 EE-KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFK 704
            +  ++  +   GD +  V    + L  +   +  M R  +GVR      G  + +   K
Sbjct: 651 GDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAMGRASRGVRGMKL-LGDDTVIGLLK 709

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +    +    +   +  N        RG  G L+ +   ++   +++
Sbjct: 710 VDDSRRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKEKTSYLVNA 758



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 18/222 (8%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLK 552
             +              + + +  +++  G  + +       + S  + AL   EGD + 
Sbjct: 597 ITDGEEISSIINFTEFHDDQYL-FMVTKHGVTKKVGLPAFRNAKSRGVRALFLDEGDIMV 655

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDS 610
            +      D ++ ++  G+   +  G++   R  G A + +  + L  +  ++     D 
Sbjct: 656 QSELMTDGDDMMFVTAGGRGLRIAGGDV---RAMGRASRGVRGMKLLGDDTVIGLLKVDD 712

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTGD-HVAVVGE 666
           + ++L+++ KG    V  S    + R  +G+   ++  +   +   + V  +  V V+  
Sbjct: 713 SRRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKEKTSYLVNALAVNDENDVVVITM 772

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
             + +   ++ I    R   GVR+ + K+     ++   + +
Sbjct: 773 QGQTIRIHVNLISTQGRNASGVRVVALKN-PKDSIVALAVTD 813


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 389/756 (51%), Gaps = 28/756 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM  +G+     +KKS
Sbjct: 10  RVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKS 69

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE +GK HPHGD ++Y+++VRLAQ +  RYPL+ GQGNFG+IDGDSAAA RYTEAR
Sbjct: 70  ARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRYTEAR 129

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +  EL+L  +DED VD+   ++E   EP+  PS  PNLL NG++GIAVGMAT++  HN
Sbjct: 130 FAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPHN 189

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A   LI  P+  ++ L+  + GPDFPTGGII+  RE I+++YR GRG   +R +
Sbjct: 190 LGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIM-GREGILDAYRTGRGKIILRGK 248

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE+  R    +V+TEIPY + K+ LIE I + +  K+I  + DIRDES      ++  
Sbjct: 249 CHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVVE 308

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  D +L+   ++  + +++ F +    L   +  + + L  +L+ +L +RR V+ RR
Sbjct: 309 LTREADAELVQRQLYSRTSLQSTFGIINLALVDNKPVE-LNLKQLLETFLNYRRSVVRRR 367

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432
           + FR+   + R  I++GL  A   ID++IAII   +  D  K  ++   + T+ Q  AIL
Sbjct: 368 TQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQAQAIL 427

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  ++ +EL  LLA+ E+  S+L++       I  E+ E++  F+     
Sbjct: 428 DMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFADE--- 484

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R T    +   +    + ++ +E I V +S  G++R                     
Sbjct: 485 ---RRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGRLGAV 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDIV 603
            K+ D +       T   I L ++ G+ + +    +   + G G A+   + L  ++ +V
Sbjct: 542 LKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDDERVV 601

Query: 604 TA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                    +T  LL ++ +G    ++  E+   TR G+  L +   +++  ++   G+ 
Sbjct: 602 AMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAIIDTDGNS 661

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGR 717
            V +V    K       +   M R  +GV+      D  I         E L  +   G 
Sbjct: 662 KVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKLAPDDRIIAAWTVAPDENLLLVSETG- 720

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +        +  RG  G        R+G+  ++
Sbjct: 721 -IGKRTKPEEFPIHHRGSGGVQAMHLGARTGRLAAA 755



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 522 VVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           + I+ RG  + + +             L   +GD +   +      ++LL+++  KA  +
Sbjct: 616 LFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHV 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
                         ++ +  L  +  I+ A+       LL+VS  G     +  E   + 
Sbjct: 676 DESEFRPMGRAARGVKAM-KLAPDDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPIHH 734

Query: 636 RK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R   G   + +   +      V   + D V ++ E  +++  S   IP +SR   G  + 
Sbjct: 735 RGSGGVQAMHLGARTGRLAAAVGVASSDEVGLMTEKGRMIRLSASDIPLLSRTATGSIVL 794

Query: 691 SYKDGGISDVICF 703
              DG +   +  
Sbjct: 795 RLNDGDLLASVSV 807


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/772 (32%), Positives = 385/772 (49%), Gaps = 62/772 (8%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +  IS+   + E  ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E G  +   ++KSAR VGEV+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDS AA RYTEAR+ + +  +L  +D D VDF+  Y+E + EP V P+ FPNLL NG +
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP+HN  E+ +A LALI NP++S++ L+EY+ GPDFPTGGII+  R  I  
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRS 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           ++  GRG   +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K+I  + DI
Sbjct: 240 AFATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADI 299

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      V+    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L
Sbjct: 300 RDESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLAL-DGGKPRLMGLKDVL 358

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------ 409
           + ++A R EV+ RRS F +     R  IL GL+IA  NID +IA+IR             
Sbjct: 359 EAFIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALM 418

Query: 410 ----------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                            D    V+  +  LTE Q   IL LRL+ L  LE  +I+ EL  
Sbjct: 419 AAQWDAAEVEPLLALIHDDGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSE 478

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +     ++  ++ S  ++   +  E+   +                 E++        ++
Sbjct: 479 VAQRINELLEIIGSHVRRMEVLRDELSVARAEIFTP--------RMTEIADYAGDQDDES 530

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE   + V I+  G+I+                 +    +  D +  + +AHT   ++ 
Sbjct: 531 LIEPGQMVVTITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMF 590

Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ GK Y      L        G A+  L+    +  I                 L+  
Sbjct: 591 FSSGGKVYRQKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFA 650

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           ++ GN      S+       G   +K+   + +  V     G  V +     + + F I 
Sbjct: 651 TASGNVRRNRLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQIT 710

Query: 677 Q--IPEM-SRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              +     RG  GVR     +G    VI   +   +        +Y R  N
Sbjct: 711 DDTLRVFAGRGSSGVRGIRLAEG--DRVISLAVLNHVEATVEERSAYLRMAN 760



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                 G     L+     + +  A        LL+VS  G        +   + R G+ 
Sbjct: 781 PDSDEEGSDTDALLSPERFEQLEVA-----EEILLIVSDGGFGRRSSAYDYRVSGRGGQG 835

Query: 641 FLKV-----SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
              +        +++   + V  G  V +V +  +L+   +DQ+  M+R   GV L    
Sbjct: 836 ITNMTFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLN 895

Query: 694 DG 695
           D 
Sbjct: 896 DD 897


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 233/713 (32%), Positives = 381/713 (53%), Gaps = 29/713 (4%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++ 
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM- 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            +  I ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KR
Sbjct: 180 GKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKR 239

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  +  +RDES  +    +    R    ++++ ++F ++ M+T F  NM  +  G +P++
Sbjct: 240 IEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKI 298

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--- 411
           + L  IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   
Sbjct: 299 LSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDA 358

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           + +  ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++ 
Sbjct: 359 EAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERV 418

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+ EVK  FS       RRT    +     +   + +IE+  + + +SNRG+I+
Sbjct: 419 SQIIKDELDEVKRKFSDK-----RRTEL--MVGQILSLEDEDLIEESDVLITLSNRGYIK 471

Query: 532 S--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
                     K     +     K+ D ++  +   T D +L  +  G+ Y L    +   
Sbjct: 472 RLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEY 531

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRK 637
                G  +  L+ L+ ++ I T    +        L   +  G        E     + 
Sbjct: 532 GRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQN 591

Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   L +  E+++  V+   GD   ++G      + F+   +  MSR   GV+  + ++G
Sbjct: 592 GLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 651

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               V    I +    +    + Y +           RGG G    K   ++G
Sbjct: 652 DTV-VGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 703



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 546 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 605

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 606 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 664

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 665 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 724

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 725 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 774



 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 519 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 575

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 576 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 635

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 636 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 695

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 696 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 755

Query: 651 K 651
            
Sbjct: 756 V 756


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/767 (32%), Positives = 397/767 (51%), Gaps = 40/767 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + + ++   ++  Y+ Y++S I  RA+PD RDG KPV RR+++AM   GL    AF K
Sbjct: 6   EKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A +VGEV+   HPHGD SVYD+LVR+AQP+V RYPLI  QGNFG++DGD AAAYRYTE 
Sbjct: 66  CAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTEC 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +AE +L+ ++ED VDF   Y E  +EP V P+  PNLL NG++GIAVGM T+IP H
Sbjct: 126 RLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A  A+IDNP IS+++L   + GPDFPTGG+ +  RE I+   + G+G  R R 
Sbjct: 186 NLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGV-IAGREGILSYLKTGKGIVRTRG 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   EE+  G   IVVTEIPY V ++ L+ +IAEL+  K+I  + D+RDES E+ RIV+ 
Sbjct: 245 KAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENTRIVIE 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R     +++  +F  + +E+ F + +  L   + P+ M +  +++ ++ HRREV+ R
Sbjct: 305 LK-RGEQSKVVINQLFQKTALESSFGVTLLAL-DKKRPKQMNIKELIECYIEHRREVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+G +IA  N+D+ + II   +N ++ K  +++++ L+E Q DAI
Sbjct: 363 RTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPLSERQTDAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  LE  +I++E   L+   E++  +L S  +    I  E+ E+KE ++    
Sbjct: 423 LELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMKEKYTSP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT   E+  A      + +I  E   + +S+ G+I+          +     +   
Sbjct: 481 ---RRT---EIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVIGA 534

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601
              E D +     A T D IL  ++ G+ +     ++  G     G+++   + L   + 
Sbjct: 535 ETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSVSSFLRLAEGEK 594

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVT 657
           I        +     L+  + +G       S+    TR+ G   + +   + +   V  T
Sbjct: 595 IAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSVIGTVLTT 654

Query: 658 GD-HVAVVGENRKLLIFSIDQ-------IPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
           G+  + +V      + F                R   GV    +K       +   +   
Sbjct: 655 GENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLDVIEVVDHE 714

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
             ++ ++              L  RGG G       P  G  K   +
Sbjct: 715 AKFLVASEAGLGVRTRFEDYRLINRGGSGVWAI-DLPEDGSIKLAGA 760



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 76/219 (34%), Gaps = 21/219 (9%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHFKEGDS 550
              E  +       +   E   + V  + RG I+               L  ++ +E DS
Sbjct: 588 RLAEGEKIAAMLCVKDFAEDRYL-VTATKRGIIKKSALSDYANATREGGLIGINLQEADS 646

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG----RGHGEAIQLLIDLN---HNQDIV 603
           +   +     + ++L+S  G A      +  SG    R  G A   +  +     +  + 
Sbjct: 647 VIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLD 706

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKVT---G 658
              V D   K LV S  G        +     R G     + +  +  +KL   ++    
Sbjct: 707 VIEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSIKLAGALSVRED 766

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
           D V ++    + +   +  I E +RG KGVRL + + G 
Sbjct: 767 DEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGD 805


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/801 (31%), Positives = 398/801 (49%), Gaps = 89/801 (11%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LIL 144
            HPHGD +VYD+LVR+AQ F  R PLI+G GNFG++D D  AA RYTE R+  +    +L
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           Q ++ + VDF D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
           ALI NPEI+  +L++YI GPDFPTG  ++     I E+Y  GRG   +R    +E V   
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVL-GTSGIREAYTTGRGSITMRGVATIETVQQR 239

Query: 262 -GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    I++TE+PYQ  K+ LIEKIA+++  KR+  + DIRDES  D   ++    R  
Sbjct: 240 GRQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDS 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            P +++ +++  + ++  F  NM  L  G+ P+++ L   L+ +L  R E + RR+ + +
Sbjct: 300 YPRVVLNNLYKQTPLQANFGANMLALVNGK-PEILNLKKFLEVFLDFRIESITRRTRYEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R  +L+GLLIA   +DEII +IR+       K  +++ + L+E Q DAIL ++LR
Sbjct: 359 RKAEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITNYGLSEVQADAILQMQLR 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I+ E ++L  +   +  +L   ++    I  EI ++KE FS       RRT
Sbjct: 419 RLTALEADKIRQEHEDLQTQIADLQDILARRERILEIIETEIAQLKESFSTP-----RRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGD 549
                   +    ++ +I  E   ++++ +G+I+ +  ++ +          A   K+ D
Sbjct: 474 VIL---PGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDDD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
           +++  L     D IL  S  G  Y L A  +   S    G AI  ++ +   + I +   
Sbjct: 531 TIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIVQMLPIPREEKITSIVP 590

Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            D       L++++  GN    E +        G   + +   ++++ V +   +   +V
Sbjct: 591 VDEFSREEYLVMLTKGGNIKKTELASFSNIRANGLIAISLEEGDQLRWVRRARVEDSILV 650

Query: 665 GEN-RKLLIFSI--DQIPEMSRG-KGVRLQSYKDGGISDVICFKI--------------- 705
           G      + F    +Q+  +SR  +GVR    K G   +++   I               
Sbjct: 651 GSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKG--DELVGMDILPAAILDTLNTDEPE 708

Query: 706 --------------------------CEGLTWIDSAG-----------RSYNRSENDLLG 728
                                      E    + S G             Y +       
Sbjct: 709 TAEIEAVEIEAVEIEAVEIEAVETENQEETAEVTSTGSIGPWVLVITMGGYGKRVPVAQF 768

Query: 729 WLGKRGGVGSLVPKGFPRSGK 749
            L  R G G +  K   R GK
Sbjct: 769 RLQNRAGQGLMATKFKNRKGK 789



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           +R L   +  + A+  K+GD L     L A   D +   + + +   + A  + +     
Sbjct: 667 LRPLSRATRGVRAMKLKKGDELVGMDILPAAILDTLN--TDEPETAEIEAVEIEAVEIEA 724

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--- 644
             I+ +   N  +             +LV++  G    V  ++     R G+  +     
Sbjct: 725 VEIEAVETENQEETAEVTSTGSIGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFK 784

Query: 645 --SSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
               ++K+  +  V  DH  + +V +   ++  +++ I   SR   GVR+Q   +  
Sbjct: 785 NRKGKDKLATLRIVNNDHDEIMMVTKRGIIIRQAVNAISIQSRSATGVRVQRLDEED 841


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 271/840 (32%), Positives = 415/840 (49%), Gaps = 111/840 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  VS+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  IDNPE+++++LLE + GPDFPTGG+I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+  R   +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPA-LMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+I E+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q  AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+        R T  E S  D     + +I +E + V 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEES--DTDIEAEDLIPQEDMVVT 530

Query: 524 ISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K                   KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRL 590

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEES 629
               L        G A+  +  L+  + I          D    ++ V++ GN      +
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFVTAHGNIRRNSLA 650

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +K+   +++  V   +  DHV +     K + F +  + +  SR   G
Sbjct: 651 DFHYIPSNGKIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTW----------------------------------- 711
           VR           VI   I  G+                                     
Sbjct: 711 VRGIKL--AKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNFIDSKLEKTLND 768

Query: 712 ------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                             +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 769 LGIDNKLFLKLAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRNGNVVAS 828



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 28/238 (11%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G R  +    S  D   L   + +     V       +R  KS + D +  +
Sbjct: 660 KIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSD-----VRQFKSRNSDGVRGI 714

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI- 602
              + DS+      +     + ++T+ K   L        +  G AI   ID    + + 
Sbjct: 715 KLAKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNFIDSKLEKTLN 767

Query: 603 -------VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                  +   +  +   +L ++  G        E     R G     + + ++   VV 
Sbjct: 768 DLGIDNKLFLKLAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRNGNVVA 827

Query: 656 V----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                 GD++ ++ +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 828 SFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 242/764 (31%), Positives = 389/764 (50%), Gaps = 62/764 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++K + L   +++ YL YA+S I  RA+PD+RDGFK VHRRI++ +  +G D     +K
Sbjct: 8   DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA IVGEV+GK HPHGD ++Y+++VR+AQ F    PLI GQGNFG+IDGDSAAA RYTE+
Sbjct: 68  SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++++ IL  +D + V FR  Y+    EP V P++ P++L NGTSGIAVGMAT+IP H
Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A  AL++NP + + +++E++ GPDFPTGG I+     I+ ++R GRG   +R 
Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQIL-GTSGILNAFRTGRGSIVMRG 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEE+      IVVTEIPYQV K++L+EKI EL   K +  + +IRDES      ++ 
Sbjct: 247 KASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVI 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +  +++  ++  + ++  F  N+  L  G VPQ + L   L  +L  R +V+ R
Sbjct: 307 EIKRDGNSQVILNQLYKHTQLQMNFSANVLALVKG-VPQTLGLKASLTCFLEFRYDVIVR 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---------------------- 412
           R+ + ++    +  IL G  +A  +ID++I +I+                          
Sbjct: 366 RTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYL 425

Query: 413 -----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                P+      + L+E Q +AIL+LRL  L  +E+ +IKS+L + +   ++   +L  
Sbjct: 426 ALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGK 485

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            ++    +  E + +K  +        RR+   E+  A+     + +I  E + V IS  
Sbjct: 486 PERVRKIMTDEFKTIKADYPTP-----RRS---EILPAEDDIEDEDLIPSEEMVVTISFG 537

Query: 528 GWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+ +               S +  KE D ++  + A+T DR+L  +  G+ Y +P   
Sbjct: 538 GYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQ 597

Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIA 633
           L  G     G AI  ++ +  ++ I +        D    LL ++SKG       S+   
Sbjct: 598 LPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFER 657

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRG-KGVRLQ 690
               GK  + +   E +  V     D+ V +       + F    +     R   GVR  
Sbjct: 658 IQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGI 717

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
                    +I   + EG   +D A R+             +RG
Sbjct: 718 KL--AHDDTIISASVLEGFN-VDPAERALYLRA-----RAAERG 753



 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 62/290 (21%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---ITVVISNRGWIRSL------KSHS 537
                 GR       + + +K T    + ++       + I+++G +R        +  S
Sbjct: 601 GTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFERIQS 660

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
               A+  ++G++L         + +LL +  G      A ++    G        I L 
Sbjct: 661 NGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLA 720

Query: 598 HNQDIVTAFVYDS----------------------------------------------- 610
           H+  I++A V +                                                
Sbjct: 721 HDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDERLLELQEH 780

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGK----TFLKVSSEEKMKLVVKVTGDHVAVVGE 666
              +L ++  G        E     R G       L   +   +     +  D + ++  
Sbjct: 781 EQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIPQDQIMLITN 840

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDS 714
             +LL   ++ I     R +GV L    KD  + +V   +  E    +D+
Sbjct: 841 KGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEEGNVMDA 890


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 284/765 (37%), Positives = 431/765 (56%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  + +A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEISA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANDSAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKSF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     ++ L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAQDDTLSYAGLAPHIGKRARKGR 756


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 281/747 (37%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+W +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 AFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPSGVVLIGTG 729

Query: 717 RSYNRSENDLLG-----WLGKRGGVGS 738
           R     +  L        +GKR   G 
Sbjct: 730 RGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 441/758 (58%), Gaps = 23/758 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +   ++ N L  E ++ + L    E  YL Y+++ I++RA+P + DG KPV RRII+AM+
Sbjct: 1   MSETTDKNKLSLEGIEQMPLERFAENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAMA 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           ++G+   A   KSAR VGEV+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G++ 
Sbjct: 61  KLGIGPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDVE 120

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTE+R++  ++++LQ ++   VDF   ++    EP   P++ PN+L NGT+
Sbjct: 121 DPKSFAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGTT 180

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP HN+ E+  AA+ L++NPE S+  L++++ GPD+P G  I+  +  +++
Sbjct: 181 GIAVGMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLLK 240

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G+G  R RA + VE        IVV+ +P+QV   ++ ++IA+L+  K++P++ D+
Sbjct: 241 MYETGKGIVRQRAVYKVE-----KEGIVVSALPFQVSGGQVEKQIADLMAKKKLPMVSDL 295

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + S  +   R+++ P++  +D D LM  +F ++D+E+ + +N+N+L +   PQV  L  
Sbjct: 296 INASDHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLKQ 355

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWL  R++ + +R S R+  ++RR+ +L+GLL+ +LN+DE+I IIR E+ PK  ++ 
Sbjct: 356 ILSEWLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENPKAKLIE 415

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LTE QV+ IL  +LR L +LEE +IK E + LLAEK+K++SLL S  +    I  EI
Sbjct: 416 RFNLTEAQVEYILETKLRQLARLEEMKIKEEQEKLLAEKKKLESLLGSQARLKTFIKKEI 475

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               +++        RR    E S    A  +  ++   P+TV++S  GW+R    ++ D
Sbjct: 476 LADVKLYGDE-----RRCPVVERSE-AVAFSEDDLMPSTPVTVILSKMGWVRQASEYNAD 529

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              + ++ GD  K      +  + + ++  G+AY++    L S RG GE +   ++L   
Sbjct: 530 AEHMTYRAGDGFKDKASGRSNQQAVFITNLGRAYSVDIRELPSARGQGEPLSSKVNLQQG 589

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           +      +  S    L+ S K   FI +  +I+   + G+  + + ++ K+   +K++  
Sbjct: 590 EFAEYVIIGQSNDYFLLASDKAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDK 649

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI-CEGLTW 711
             D +AV     KLLI+  + +P + RGKG +L S      D GI  V    +  EG + 
Sbjct: 650 SSDLLAVASRQGKLLIYKAEDLPVLPRGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSSI 709

Query: 712 IDS-AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           I     R  N S +++   L  R   G  +P+GF +  
Sbjct: 710 IIHCGKRILNLSASEITERLSVRTKRGDTLPRGFQKVD 747


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/723 (34%), Positives = 391/723 (54%), Gaps = 63/723 (8%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPDLRDG KPVHRRI++AM E G     +++KSAR VG+V+GK HPHGD ++
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD+LVR+AQ F    PL+ GQGNFG++DGD+ AA RYTE RM + A  +L  +D++ VDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+ +D EP V P++FPN+L NG  GIAVGMAT+IP HN+ E+ +A LALID+P+++ 
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           E+L+EY+ GPDFPTGG+++  R    ++Y  GRG   +R++  VEE+ +  + IVV EIP
Sbjct: 181 EQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+ +IEKIAE +  KRI  +  ++DES  +   V+    R   P++++  +F  S 
Sbjct: 240 YQVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+T F  NM  L+ G  P+ + L   L  ++  R +V+ RR+++ ++    R  IL GL 
Sbjct: 300 MQTSFGCNMLALN-GGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLA 358

Query: 395 IAYLNIDEIIAIIRNEDKP-----------------------------KPVMVSRFSLTE 425
           +A  N+DE++A IR+                                 K    + ++L+E
Sbjct: 359 VAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL+ L ++   ++  EL+ L A+ ++   +L+S ++  + IA E+REV+E 
Sbjct: 419 TQARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQ 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       RRT   E+         + +IE+E + V +++ G+I+          K   
Sbjct: 479 FAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGG 530

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
             LS +  KE D +     A+T  ++L  +TDG  Y L    L      G G+AI  ++ 
Sbjct: 531 KGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILP 590

Query: 596 LNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE- 648
           +     I      D      +  +++  +S G       S+       GK  +K   E  
Sbjct: 591 IPTGVSIAAIMPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHA 650

Query: 649 --KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF 703
             K+      +  D V +V    + + F   ++    SR   GVR     DG  ++V+  
Sbjct: 651 ETKLINARICSEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDG--AEVVSM 708

Query: 704 KIC 706
            + 
Sbjct: 709 SVV 711



 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 10/129 (7%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL-----VVS--SKGNAFIVEESEIIANTR 636
           R  GE    + D   +++   A   D   ++L     +V+    G   +    +   + R
Sbjct: 727 RFRGELGNDVSDEETSEENEGALSEDRYQEMLAANDLLVTINKAGAGNLTSAHDYRVSGR 786

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
            G+    +   E +        D + +     + +   +D I   SR   GVR+  +  G
Sbjct: 787 GGQGVGAMKGGEIVATFPVTLEDQIMLATSKGQSIRVPVDGISFRSRSAGGVRV--FNTG 844

Query: 696 GISDVICFK 704
              +V+   
Sbjct: 845 KGEEVVSVA 853


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 282/751 (37%), Positives = 425/751 (56%), Gaps = 38/751 (5%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KS
Sbjct: 16  DTDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN
Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+
Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEISAAYETGRGSLKVRAK 255

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPL 297
           W +E++ RG W +VVTE+P      +++E+I EL                       + L
Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P   
Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL EW+ +R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK 
Sbjct: 376 GLLTILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKS 435

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++S F LTE Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +
Sbjct: 436 ALMSAFGLTERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLM 495

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             EI       + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK 
Sbjct: 496 IKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKG 546

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+
Sbjct: 547 HGLDPAGFSFKAGDGLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L     ++  +      +LL+ SS G  F+ +  ++++  + GK+F+ + +       + 
Sbjct: 607 LESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMP 666

Query: 656 V--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
           V      VA +    +LL+F++D++  +   G+GV L +  D   + V    I      +
Sbjct: 667 VLPNATQVACLSSGGRLLVFAMDEMKTLSGGGRGVTLMAL-DDKETLVQALAIDPAGVVL 725

Query: 713 DSAGRSYNRSENDLLG-----WLGKRGGVGS 738
              GR     +  L        +GKR   G 
Sbjct: 726 IGTGRGGKVQDETLSYAGLAPHIGKRARKGR 756


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/748 (37%), Positives = 426/748 (56%), Gaps = 40/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF   Y+    EP   PS+ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  +Y  GRG  +VRA+W +E
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES ++  VR+V  PK+R++D    + ++   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K++ LL +       +  EI
Sbjct: 440 AFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T DR++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--T 657
             ++  +   +  +LL+ SS G  F+ +  ++++  + GK+F+ + +       + V   
Sbjct: 611 SHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPN 670

Query: 658 GDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKETLVQALAIDPAGVVLIGTG 729

Query: 717 RSYNRSENDLLGW------LGKRGGVGS 738
           R   + ++D L +      +GKR   G 
Sbjct: 730 RG-GKPQDDTLSYAGLAPHIGKRARKGR 756


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 285/752 (37%), Positives = 419/752 (55%), Gaps = 42/752 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +++L    E  YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  SLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  + E  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 IAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP++   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLED 300
           EE+ RG W +VVTE+P      +++E+I EL                       + LL+ 
Sbjct: 259 EELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLA 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++
Sbjct: 379 AILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALI 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  E
Sbjct: 439 GAFGLTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKE 498

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I       + +   G  R T  +  +       +  +  EP+TVV+S +GW+R+LK H +
Sbjct: 499 IE------ADAKQFGDERRTLIQQEKRA---TFETKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKL 652
              ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +           +
Sbjct: 610 GSHLLHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPM 669

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            V      VA +    +LL+F ID++  +   G+GV L +  D   + V    I      
Sbjct: 670 PVLPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMAL-DPKETLVQALAIDAAGVV 728

Query: 712 IDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           +   GR     E  L G      +GKR   G 
Sbjct: 729 LTGTGRGGKAQEETLAGRALEPHVGKRARKGR 760


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 399/800 (49%), Gaps = 83/800 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+
Sbjct: 11  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  
Sbjct: 71  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+ ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  
Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  AL +NP+++ E L+EY+ GPDFPTG I V  R  I E+Y  G G  RVRAR  +E  
Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGAI-VCGRSGIREAYLTGHGRVRVRARTEIETD 249

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +G   I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV+    R   
Sbjct: 250 AKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIEL-RRDAV 308

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F  + ++T F +    L    +P+++ L  +L+ ++ HR +V+ R + F ++
Sbjct: 309 GEVVLNNLFKYTQLQTTFSIYNLALVNN-LPKLLTLKDLLQVYIDHRLDVITRATQFDLK 367

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
               R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  
Sbjct: 368 KAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQ 427

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  L   ++++E + L+A    +  +L   +++   +  ++  V + +        RRTT
Sbjct: 428 LVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDE-----RRTT 482

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
             E       +  + +I +E   + +S  G+IR                +     K+ D+
Sbjct: 483 IGEAID---DSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDN 539

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTA 605
           ++    A T   +L+ +  G+ Y      L  G   G G  I   + L   +    IV  
Sbjct: 540 VEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPV 599

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV------------ 653
             +     L+  + KG    ++ +      + G   + +  ++++  V            
Sbjct: 600 RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEA 659

Query: 654 ----------------------------------------VKVTGDHVAVVGENRKLLIF 673
                                                     +  D + +  +N + + F
Sbjct: 660 SKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTF 719

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLG 731
            I     M RG  GV+  +  +G   +VI    +  G   +    + Y +        + 
Sbjct: 720 PISCFRAMGRGTHGVKGITLAEG--DEVISLLWLKAGNKILTITEKGYGKRSEPGSYRVT 777

Query: 732 KRGGVGSLVPKGFPRSGKFL 751
           +RG  G        + G  +
Sbjct: 778 RRGSKGVRNLNVTDKIGAAV 797



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A T P        G G      I L    ++++     +  K+L ++ K
Sbjct: 705 DLLMIATKNGQAVTFPISCF-RAMGRGTHGVKGITLAEGDEVISLLWLKAGNKILTITEK 763

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     E        R  K    ++  +K+     V  V  D  + +  ++ +++     
Sbjct: 764 GYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQVIRIKAA 823

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            I    R  +GV+  + +DG  + D       E +
Sbjct: 824 DIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDI 858


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 287/753 (38%), Positives = 426/753 (56%), Gaps = 42/753 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL YA+S +K RA+P++ DG KPV RRI++AM EMGL   A   KSAR
Sbjct: 16  EYLTLGDYAERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAMHEMGLAADAKPVKSAR 75

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGD S Y++LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T
Sbjct: 76  VVGDVLGKYHPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLT 135

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A+L+L  +D+  VDF   Y+    EP   P + P +L NG SGIAVGMAT +P HN++
Sbjct: 136 PIAQLLLDEIDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGASGIAVGMATEVPPHNLR 195

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +AA+ LI NP +    L+E I GPDFP GG I+ S   I  +Y  GRG  +VRARW 
Sbjct: 196 EVAQAAIELIRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAAAYESGRGSLKVRARWK 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLE 299
           +EE+ RG W +V+TE+P      +++E+I EL                       + LL+
Sbjct: 256 IEELARGQWQLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTLTPEQLQTKQSLLALLD 315

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES +D  VR+VL PK+  +DP   + ++   + +E+  P+N+ ++     P+   L
Sbjct: 316 AVRDESGKDSPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPINLVMIGADGRPRQKGL 375

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+EW+ +R   + RR+ FR+  +  R+ IL+G +I +LN+DE+I IIR  D+PK  +
Sbjct: 376 GEILREWIGYRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLDEVIRIIRESDEPKAAL 435

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++ F L++ Q D IL +RLR L +LE+ +I+ EL  L  EK +++ LL S       I  
Sbjct: 436 IAAFGLSQRQADDILEIRLRQLARLEKIKIEKELGELRDEKARLEQLLGSDVAMKRLIIK 495

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI    + F  +      R T  +    DK    +A +  EP+TVV+S RGW+R+LK H 
Sbjct: 496 EIEADAKQFGDA------RRTLIQ---QDKRATFEARVVDEPVTVVVSQRGWVRTLKGHG 546

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +D S   FK GDSL  A    T D ++   ++G+ Y++P   L  GRG G  +  LI+L 
Sbjct: 547 LDASGFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVPVAALPGGRGDGVPVTSLIELE 606

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               ++  F       LL+ SS G  FI    ++I+  + GK+F+ + +  +    + + 
Sbjct: 607 AGTHLMHYFAAPLEQPLLLASSNGFGFIARIGDMISRVKAGKSFMTIDAGAQPLAPMPMW 666

Query: 658 GD--HVAVVG----ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
            D   VA +     +  +LL+F +D++  +S  G+GV L    DG    +    I +   
Sbjct: 667 PDASQVACLALGAKDETRLLVFGLDEMKTLSSGGRGVTLIGL-DGNEQLLQALAIGQAGL 725

Query: 711 WIDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
            +  AGR     +     + L  ++GKR   G 
Sbjct: 726 LLSGAGRGGKPQQQRLVGDALAPYVGKRARRGK 758


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 276/750 (36%), Positives = 415/750 (55%), Gaps = 41/750 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 22  LTLGLYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARVV 81

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD+AAA RYTEAR+T +
Sbjct: 82  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 141

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L+ +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+
Sbjct: 142 ARLLLEELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREV 201

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI NP++  E LL  I GPDF  GG I+     I   Y  GRG  + RARW  E
Sbjct: 202 AQACVALIRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQFE 261

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELI------------------IAKRIPLLEDI 301
           E+ RG W +VV E+P      +++E+I EL                    A  + LL+ +
Sbjct: 262 EMARGQWQLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDAV 321

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK   +D D  +  +   + ME   P+N+  +     P+   L  
Sbjct: 322 RDESGKDAAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLRS 381

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L EWLA R E + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR+ D+PKP ++ 
Sbjct: 382 VLDEWLAFRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPALMD 441

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF+LTE Q + IL +RLR L +LE ++I+ EL +   E+ ++  LL++       +  EI
Sbjct: 442 RFALTERQAEDILEMRLRQLARLEGFKIEQELADKREEQSRLQDLLDNPGSLKRLLIKEI 501

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  E +      + +  +  EP+TVV+S  GW+R+ + H  D
Sbjct: 502 E------ADAKQHGDERRTLIESAERA---VLETKVLDEPVTVVVSRNGWLRARQGHGHD 552

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD L  A    TTD ++ +  +G+ YT+    L S RG G+ +  +IDL   
Sbjct: 553 AAQFTFKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAVSALPSARGDGQPVTTMIDLEAG 612

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             IV      +  + L+ +     F    S++ +  R GK F+ +   + +   V +   
Sbjct: 613 TRIVHTIAAAADSRWLLATQSAYGFATRLSDMSSRQRAGKQFVTLDKGDVLLRPVPLFEG 672

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++    KLL+F +D++  +   G+G  L         D        GL    +AG
Sbjct: 673 AVQLALLSSKAKLLVFGLDELKSLSGGGRGTILMGLDANDRLDQAVPIAAGGL---RAAG 729

Query: 717 RSYNRSEND------LLGWLGKRGGVGSLV 740
              N+   D      L  ++GKR   G ++
Sbjct: 730 IYRNKPTEDILVGATLAPYVGKRARKGRVL 759


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 285/752 (37%), Positives = 419/752 (55%), Gaps = 42/752 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +++L    E  YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL   A   KSAR+
Sbjct: 19  SLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARV 78

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  + E  VDF   Y+    EP + P + P +L NG SGIAVG+AT IPSHN++E
Sbjct: 139 IAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+ALI NP++   +L++ + GPDFP GG I+ S   I  +Y  GRG  +VRARW +
Sbjct: 199 VAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKI 258

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLED 300
           EE+ RG W +VVTE+P      +++E+I EL                       + LL+ 
Sbjct: 259 EELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDA 318

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L 
Sbjct: 319 VRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLA 378

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++
Sbjct: 379 AILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALI 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  E
Sbjct: 439 GAFGLTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKE 498

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I       + +   G  R T  +  +       +  +  EP+TVV+S +GW+R+LK H +
Sbjct: 499 IE------ADAKQFGDERRTLIQQEKRA---TFETKVVDEPVTVVVSQKGWVRALKGHGL 549

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L  
Sbjct: 550 DPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELES 609

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE------EKMKL 652
              ++  F   +   LL+ SS G  FI +  ++++  + GK+F+ + +           +
Sbjct: 610 GSHLLHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPM 669

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTW 711
            V      VA +    +LL+F ID++  +   G+GV L +  D   + V    I      
Sbjct: 670 PVLPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMAL-DPKETLVQALAIDAAGVV 728

Query: 712 IDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           +   GR     E  L G      +GKR   G 
Sbjct: 729 LTGTGRGGKAQEETLAGRALEPHVGKRARKGR 760


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 228/759 (30%), Positives = 374/759 (49%), Gaps = 78/759 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++ ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++AM EMGL     + K 
Sbjct: 29  HMISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG  +G  HPHGD ++YD++VRLAQPF  RYPL+ GQGNFG++DGD  AA RYTEAR
Sbjct: 89  AKVVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + ++A  ++  +D D VDF   Y+E   EP V P+++PNL+ NG+SGIAVGMAT+IP HN
Sbjct: 149 LMKIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + L++NP   + ++LE++ GPDFPT G  +  +  I  +YR GRG F +RA+
Sbjct: 209 LTEVINACITLVNNPSAGLAEVLEHVQGPDFPTAG-FIYGKSGIANAYRTGRGKFLMRAK 267

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E +  G   I+V+EIPYQV K+ LI++IAEL+  K I  + D+RDES  D   ++  
Sbjct: 268 CSRENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIE 327

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R+  P++++  +F  + M+  F +    +  GR  + +PL   ++ ++ HR +V+ RR
Sbjct: 328 LKRTAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVE-LPLPDAIRAFIDHRVDVVRRR 386

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS---------- 422
           ++F +     R  IL G  IA  ++D +I  IRN       +  +   FS          
Sbjct: 387 TAFLLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTE 446

Query: 423 ------------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                         L+  Q+D IL L+L  L +L   ++  EL 
Sbjct: 447 LAGVTLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELG 506

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            +     + +S+L S K+    I  E+ EV+E +        RRT   + S        +
Sbjct: 507 QVRENIAEYESILASDKKLRRVIIKELEEVREKYGD-----VRRTQIIDESS---ELTLE 558

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I  E + V +S+ G+         R  +        +  +E D +   +   T   +L
Sbjct: 559 DLIADEQVAVTVSHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLL 618

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVS 618
             +  G+ + L    +      G G+ I  L+ L   + +V         D++  +   +
Sbjct: 619 CFTNSGRVFWLKIYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLEDASKYIFFAT 678

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSID- 676
            +G        +      +G   + +  ++++  V   +G+ V  +       + FS   
Sbjct: 679 REGIVKKTPLPDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKY 738

Query: 677 ------QIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
                  +  M R   G +  + K G    VI   + + 
Sbjct: 739 DPEKSGGLRPMGRNAGGNKGITLKKGDY--VIGAAVTDS 775



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 73/254 (28%), Gaps = 51/254 (20%)

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRG---------------WIRSLKSHSVDL 540
           R         D   +   +   E +  + +  G                +R +  ++   
Sbjct: 697 RGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGGLRPMGRNAGGN 756

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-------------------LL 581
             +  K+GD +  A    + ++      DG+   L                       L 
Sbjct: 757 KGITLKKGDYVIGAAVTDSREK-----RDGQRDELAVATKLEKELAAVRAEIAAAEAELQ 811

Query: 582 SGRG---HGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANT 635
             R      EA      L+  ++ +         S C +L V+  G     +  E     
Sbjct: 812 KARDSKNEEEAKAARKALDVVEEKLCKLDGKLGLSPCLILSVTENGYGKRTDVEEYRLTN 871

Query: 636 RKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
           R G   + + +  K   V  +        +  + +  K++    + I    R  +GV+L 
Sbjct: 872 RGGSGVINMKASAKTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIRAAGRSTQGVKLL 931

Query: 691 SYK-DGGISDVICF 703
           +   D  ++  +  
Sbjct: 932 NLDTDDKVAAAVTI 945


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 399/800 (49%), Gaps = 83/800 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL Y++S I  RA+PD RDGFKPVHRR++++M ++G+       KSARIVG+
Sbjct: 15  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD+L R+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA+M  +  
Sbjct: 75  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+ ++++ VD    Y+E   EP+V PS  PN++ NGTSGIAVGMAT++  HN++E+  
Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  AL +NP+++ E L+EY+ GPDFPTG I V  R  I E+Y  G G  RVRAR  +E  
Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAI-VCGRSGIREAYLTGHGRVRVRARTEIETD 253

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +G   I+VTEIPY V K+ L +KIA+L+  KRI  + DIRDES+ D+RIV+    R   
Sbjct: 254 AKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIEL-RRDAV 312

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F  + ++T F +    L    +P+++ L  +L+ ++ HR +V+ R + F ++
Sbjct: 313 GEVVLNNLFKYTQLQTTFSIYNLALVNN-LPKLLTLKDLLQVYIDHRLDVITRATQFDLK 371

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
               R+ I++GL IA  NIDE++ IIR        K  +  RFSL E Q  AI+++RL  
Sbjct: 372 KAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQ 431

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  L   ++++E + L+A    +  +L   +++   +  ++  V + +        RRTT
Sbjct: 432 LVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDE-----RRTT 486

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
             E       +  + +I +E   + +S  G+IR                +     K+ D+
Sbjct: 487 IGEAID---DSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDN 543

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTA 605
           ++    A T   +L+ +  G+ Y      L  G   G G  I   + L   +    IV  
Sbjct: 544 VEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPV 603

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV------------ 653
             +     L+  + KG    ++ +      + G   + +  ++++  V            
Sbjct: 604 RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEA 663

Query: 654 ----------------------------------------VKVTGDHVAVVGENRKLLIF 673
                                                     +  D + +  +N + + F
Sbjct: 664 SKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTF 723

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLG 731
            I     M RG  GV+  +  +G   +VI    +  G   +    + Y +        + 
Sbjct: 724 PISCFRAMGRGTHGVKGITLAEG--DEVISLLWLKAGNKILTITEKGYGKRSEPGSYRVT 781

Query: 732 KRGGVGSLVPKGFPRSGKFL 751
           +RG  G        + G  +
Sbjct: 782 RRGSKGVRNLNVTDKIGAAV 801



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A T P        G G      I L    ++++     +  K+L ++ K
Sbjct: 709 DLLMIATKNGQAVTFPISCF-RAMGRGTHGVKGITLAEGDEVISLLWLKAGNKILTITEK 767

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     E        R  K    ++  +K+     V  V  D  + +  ++ +++     
Sbjct: 768 GYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQVIRIKAA 827

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            I    R  +GV+  + +DG  + D       E +
Sbjct: 828 DIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDI 862


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 245/737 (33%), Positives = 385/737 (52%), Gaps = 63/737 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   ++  YL YA+S I  RAIPDLRDG KPVHRRI++ + E G      ++K A  V
Sbjct: 14  ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATAV 73

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+G+ HPHGD +VYD+LVR+AQ F    PLI GQGNFG++DGD  AAYRYTE+R+ + 
Sbjct: 74  GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 133

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y  E +EPVV P+++PN+L NG  GIAVGMAT IP HN+ E+
Sbjct: 134 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 193

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A LALI+NP++S E+L+EYI  PDFPTGG+I+  R    ++Y  GRG   +RA+  +E
Sbjct: 194 IDATLALIENPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRIE 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+ R  + IV+ EIPYQV K+ +IE+IAE +  K+I  +  ++DES      V+    R 
Sbjct: 253 EIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELKRD 312

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++  ++  + M+  F  NM  L+ G  P+ + L   L  +L  R +V+ RR+++ 
Sbjct: 313 ATAEVVLNQLYRFTPMQVSFGCNMLALN-GGKPEQLTLRTFLTAFLDFREDVVARRTAYL 371

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------------------- 413
           ++    R  IL GL +A  N+DE++A IR                               
Sbjct: 372 LRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLIDD 431

Query: 414 ---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
              K      ++L+E Q  AIL LRL+ L +L   ++  EL+ L  + ++   +L S ++
Sbjct: 432 PTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRER 491

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I+ E+  V++ F+       RRT   E+         + +IE+E + V ++  G+I
Sbjct: 492 IMEIISNEMTAVRDQFAVP-----RRT---EIVDWAGDMDDEDLIEREDMVVTVTQSGYI 543

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          K     LS    KE D +     A+T  ++L  +T G  Y L    L  
Sbjct: 544 KRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRLPQ 603

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIAN 634
           G     G+AI  ++ +     +      D         +++  +SKG+      S+    
Sbjct: 604 GGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFTNV 663

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVR 688
            R GK  +K   +++    +   +    D V +V  + + + F +  +    SR   GVR
Sbjct: 664 MRNGKIAMKFEGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNSTGVR 723

Query: 689 LQSYKDGGISDVICFKI 705
                +G   +V+   +
Sbjct: 724 GVKLANG--DEVVSMSV 738



 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           L ++  G      + +       G  +          +IV +F  +   ++++ +S G +
Sbjct: 797 LTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRGGEIVASFPVEMEDQIMLATSTGQS 856

Query: 624 FIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659
             V    I   +R   G         E +  V  +   
Sbjct: 857 IRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQ 894


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/737 (32%), Positives = 374/737 (50%), Gaps = 59/737 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G      ++KS
Sbjct: 15  DMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR
Sbjct: 75  ARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSVDGDSPAAMRYTEAR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP+HN
Sbjct: 135 LAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGASGIAVGMATNIPTHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             EI +A LALI NP+++++ L+  + GPDFPTGGII+     I  ++  GRG   +RAR
Sbjct: 195 PAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIIL-GHAGIRSAFETGRGSILIRAR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+ R    IV+TEIPYQV K+ L E+IAEL+ AK+I  + DIRDES      ++  
Sbjct: 254 AEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIRDESDRSGMRIVIE 313

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F +NM  L  G+ P++M L  +L+ ++  R +V+ RR
Sbjct: 314 IKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQ-PRLMGLKDVLEAFITFREDVILRR 372

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + F +     R  +L GL+IA  NID +IA+IR                           
Sbjct: 373 ARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMATAWDAADVEPLLA 432

Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +  LTE Q   IL LRL+ L  LE  +I+ EL  + A   ++ +++ S
Sbjct: 433 LIQDEGNVVTDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEVAARINELLTIIAS 492

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             ++   +  E+  ++   +             E+++       +++IE   + V I+  
Sbjct: 493 RPRRMEVMCEELAAIRAELATP--------RMTEIAQYAGDQTDESLIEPGQMVVTITRE 544

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                 +A   +  D +  + +AHT   +L  S+ GKAY      
Sbjct: 545 GFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYREKVWR 604

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L        G A+  L+       I                 L+  ++ GN      S+ 
Sbjct: 605 LPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRNRLSDF 664

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SR-GKG 686
                 G   +K+   +++  V     G  V +     + + F I    +     R   G
Sbjct: 665 RNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAGRDSSG 724

Query: 687 VRLQSYKDGGISDVICF 703
           VR     +G   + +C 
Sbjct: 725 VRGIRLAEGDEVNSLCV 741



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           I   I++          S  +  +   EGD +      +     +  + + +A  L   N
Sbjct: 705 IRFQITDDTLRVFAGRDSSGVRGIRLAEGDEVNSLCVLN----HVEATVEERASFLRMAN 760

Query: 580 LLSGRGHGEAIQLLID-------LNHNQDIVTAFVYDSTCK---------LLVVSSKGNA 623
               R    A+Q   +        + ++ +    V D             LL VS+ G  
Sbjct: 761 -ARRRAENAALQAGEEAEEVAAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFG 819

Query: 624 FIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
                 +   + R G+    +         ++   + V  G  V +V +  +L+   +DQ
Sbjct: 820 RRSSAYDYRVSGRGGQGIANMTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQ 879

Query: 678 IPEMSR-GKGVRLQSYK 693
           I  MSR   GV L    
Sbjct: 880 IRVMSRQASGVTLFRLD 896


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 234/786 (29%), Positives = 392/786 (49%), Gaps = 68/786 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +    LR  +   Y+ YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 15  SDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F    PLI G GNFG++D D  AA RYT
Sbjct: 75  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYT 134

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +    +L+ ++ + VD+ D ++    EP V P++ P LL NG++GIAVGMAT+I
Sbjct: 135 ESRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI+NPEIS ++L+  I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 195 PPHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQIL-GRAGIRETYLSGRGSVT 253

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    VE +          +++T +PYQ  K+ LIE+IAE++  K++  + DIRDES  
Sbjct: 254 MRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  +M  L  G    ++ L  +L+ +L  
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPI-LLTLRKMLEVFLDF 372

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R E + RR+ + ++  + R  IL GLL+A   +D IIA+IR        +  +  R  L+
Sbjct: 373 RIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHGLS 432

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q DAIL ++LR L  LE  +I+ E ++L+ +      +L   ++    I  E+ +++E
Sbjct: 433 AVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRE 492

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             S       RRT   +++   +      +I  E   V+++  G+++ +     + ++  
Sbjct: 493 RHSVP-----RRTEILDLAGGLEDI---DLIANERSVVLLTETGYLKRMPVSEFEATSRG 544

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
            +          +++K+ +  +  D +LL S  G AY LPA  +   S    G  +  L+
Sbjct: 545 TRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLL 604

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      ++    LL+++  G       S        G   + +   + + 
Sbjct: 605 PIPREEAITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALT 664

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKI-- 705
            V   + GD V +  +    + F +   ++  + R  +GVR  + + G    ++   +  
Sbjct: 665 WVRLSIPGDSVLIGSKAGMTIHFRLADGELRPLGRTARGVRSMNLRKG--DSLVSMDVLP 722

Query: 706 -----------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
                                         EG   + ++     +        L KR G+
Sbjct: 723 AELADQIAASADDAGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGM 782

Query: 737 GSLVPK 742
           G    K
Sbjct: 783 GLRAMK 788



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE-EKMKLVVKV-TGDHVA 662
           V      +LV S+ G    V  ++     R G     +K  ++ +++  +  +  G+ + 
Sbjct: 750 VAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVLGAGEELL 809

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLT 710
           +V E   ++    D IP+ SR   GVRLQ    G     +     E  T
Sbjct: 810 LVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 858


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 395/758 (52%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P+ ++++L+  + GPDFPTGGI ++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGI-IQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +  NM  +   R P++M L  +L  ++AHR+EV+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSFNMVAI-HERRPKLMSLPELLDAYIAHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             RS F ++  + R  I+ GL+ A   +DE+IA IR        K  +++ +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L   R    G+ I  LI L  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +++  +L+ V+ +G     E ++       +    + V  ++ +  V    G  
Sbjct: 593 AVPVSSFNTGEQLVFVTKQGLVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGCG 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++    R
Sbjct: 653 HLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGSSFVVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   +S   + + +
Sbjct: 713 GAVKKVAMSEFEPSSRAKRGVVIVREV-KSNPHRVVGA 749


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 274/752 (36%), Positives = 438/752 (58%), Gaps = 22/752 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   +     ++L    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   NQFTQPTEDYLALHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARAVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L+ + E  VD++  ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++EI  A + LID P+IS+++L+ ++ GPDFPT   I+  RE I + YR GRG
Sbjct: 182 TDIPPHNIKEIAYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYRTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE        V+T +P+QV  ++++E+IA+ + AK++P+LED+RDES  +
Sbjct: 242 SIRMRAVWKKEEGNA-----VITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+++ P++  +  + +M  +F  +D+E    +NMN++ + + P V  L  IL EWL 
Sbjct: 297 HPTRLIIMPRHHGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLVSILTEWLT 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR  L RR  F +  I +R+ +LKGLL+A+LNIDE+I IIR ED+ K  ++SRF L+  
Sbjct: 357 FRRATLRRRLLFNLDKILKRLHVLKGLLVAFLNIDEVIHIIRTEDEQKSFLISRFGLSLI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+LR L KLEE  I++E D L  E   + SLL S K+  N I  +I++   ++
Sbjct: 417 QADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASEKKLNNLIKKDIQDDACLY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +      RR+   + + + ++   + +   EP+TV++S  GW R  K H +D   L++K
Sbjct: 477 GQ-----NRRSPLVQRTASKESNENEVL-PSEPVTVILSKMGWARCAKGHEIDPVGLNYK 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D+        +    +LL + G+ Y L    L   R  GE +   +       +    
Sbjct: 531 KSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHARHQGEPVMGKLTPPQGAVVKALM 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV-V 664
           + +     L+ S  G  FI   ++++A  R GK  + +    ++   + +T  +H  + +
Sbjct: 591 MAEPEQSYLMASDAGYGFICTFADMVAKNRGGKILMTLPEGAQILPPLLITHANHYLLSI 650

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSY-----KDGGISDVICFKICEGLTW-IDSAGRS 718
               ++LIFS+  +P +S+GKG ++ S      + G    +  F +    +  + S  R 
Sbjct: 651 TALGRMLIFSMADLPTLSKGKGNKIISILSADWQAGLDRVIHLFMLPPNQSVTLYSGKRK 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            + +   L  +  +RG  G+L+P+GF R  K 
Sbjct: 711 LHLTHQHLQKFCSQRGKRGTLLPRGFQRIDKI 742


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 235/794 (29%), Positives = 397/794 (50%), Gaps = 66/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +  +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 10  SDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLSSDRPY 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYT
Sbjct: 70  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSDPPAAMRYT 129

Query: 133 EARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  +  E +L+ ++ + VDF D ++    EP V P++ P+LL NG+SGIAVGMAT+I
Sbjct: 130 ESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATNI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A LA+I +PEIS   L+  + GPDFPTGG I+  R+ I E+Y  GRG   
Sbjct: 190 PPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQIL-GRKGIREAYTTGRGSVT 248

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          +++TE+PYQ  K+ LIE+IAEL+  K++  + DIRDES  
Sbjct: 249 MRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISDIRDESDR 308

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  ++  L  G  P ++ L  +L  +L  
Sbjct: 309 DGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGE-PVLLTLRQMLHVFLDF 367

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           R E + RR+ + ++  + R   L GLL+A   +D II +IR                 L+
Sbjct: 368 RIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARYQLQYFHGLS 427

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DAIL ++LR L  LE  +I+ E ++L+ +      +L    +    I  E++ +  
Sbjct: 428 EIQADAILQMQLRRLTALEADKIRFEHEDLVQKVNNYRDILAHRDRVLELIKEELKLLHN 487

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            ++       RRT   ++  + +      +I  E   V+++  G+++ +           
Sbjct: 488 RYNSP-----RRTKILDLEGSLEDI---DLIANERSVVLLTENGYLKRMPVSEFEATNRG 539

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
           +   +    +  + +K+ +  +  D +LL S  G +Y LPA  +   S    G  +  ++
Sbjct: 540 TRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQIL 599

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   ++I +      +++  +LL++++ G       S        G   + +   + ++
Sbjct: 600 PIPREEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAFSNIRSNGLIAINLELGDALR 659

Query: 652 LVVK-VTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG----------- 696
            V   + GD V +       + F I  +++  + R  +GVR  + +D             
Sbjct: 660 WVRLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARGVRAMNLRDNDSLVSMDVLPAE 719

Query: 697 ISDVICFKICEGLT-------------------WIDSAGRSYNRSENDLLGWLGKRGGVG 737
           ++D +   +  G+                     + ++     +        L +R G+G
Sbjct: 720 LADQVANSVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRAGMG 779

Query: 738 SLVPKGFPRSGKFL 751
               + F R G  L
Sbjct: 780 LRAMR-FRRKGDVL 792



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSEEKMKLVVKVTG--DHVAVVGENRK 669
           +LV S+ G    V  ++     R G     ++   +  + + +KV G  + + +V E   
Sbjct: 753 VLVASASGLGKRVPVNQFRLQRRAGMGLRAMRFRRKGDVLVGLKVLGSREELLLVSEKGV 812

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICF 703
           ++    D IP+ SR   GVRLQ   DG  +++++  
Sbjct: 813 IVRMQADLIPQQSRAATGVRLQKLDDGDHLAEIVLI 848



 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 33/160 (20%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIA---------LHAHTTD------------------- 561
           +R L  ++  + A++ ++ DSL              A++ D                   
Sbjct: 689 LRPLGRNARGVRAMNLRDNDSLVSMDVLPAELADQVANSVDSGVEEREELGGGTGSASPA 748

Query: 562 ---RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
               +L+ S  G    +P       R  G  ++ +        +V   V  S  +LL+VS
Sbjct: 749 AGPWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRFRRKGDVLVGLKVLGSREELLLVS 808

Query: 619 SKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
            KG    ++   I   +R   G    K+   + +  +V +
Sbjct: 809 EKGVIVRMQADLIPQQSRAATGVRLQKLDDGDHLAEIVLI 848


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 286/765 (37%), Positives = 427/765 (55%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIREADEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------TDAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F      +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + S       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDSGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 244/768 (31%), Positives = 399/768 (51%), Gaps = 32/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +  T    NV+ + L+  +E  +L Y+LS I  RA+PD RDG KPVHRRI+++M + G
Sbjct: 1   MPDEPTPDASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                   K A++VG+V+ + HPHGD ++YD+LVR+AQ F   +PLI G GNFG+ D  +
Sbjct: 61  YRPDRPHVKCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPST 120

Query: 126 -AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTE R+  +A  +L G+DED VDF   Y+ +  EP V P++FPNLL NG+ GIA
Sbjct: 121 GPAASRYTECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IPSHN+ E+ +A   LID+PE ++++L+ ++ GPDFPTGGII+  R+ I ++YR
Sbjct: 181 VGMATQIPSHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIIL-GRDGIRDAYR 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  ++RA   +EE   G + IVVTEIP+Q     + +KI  L+  K +  + D+++ 
Sbjct: 240 TGRGSVKLRAVATIEEARSG-YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNF 298

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           SA      +    R  +P++++ +++ L+ ++T FP+ M  L  G  P+ + L G+ + +
Sbjct: 299 SAGSETRFVIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGA-PRTLNLLGLCQIY 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII----RNEDKPKPVMVSR 420
           + H+REV+ RRS FR+     R+ I++GLL     +D +IA I            +M   
Sbjct: 358 VDHQREVIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEP 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F  +E Q + IL++ L  L +L   +++ E   L A   +++++L   ++    +  E+ 
Sbjct: 418 FGFSELQANHILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQRLSAVVKDEML 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
                +       + R T  EV   D A   + +IE EPI V+IS  G+I+++   S   
Sbjct: 478 AATAEY------RQARRTRFEVDPGDFA--AEDLIEDEPIVVLISRSGYIKAVPESSFKA 529

Query: 541 S--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
                        K+ D +   + +    R+L+ S+ G+ Y L    L        G A+
Sbjct: 530 QGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTAL 589

Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L  ++ I +      +     L+  +  G       +E   + R G   + V  +
Sbjct: 590 VNLVPLADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGD 649

Query: 648 EKMKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           +++  VV  T +H   V  +  ++L F + ++    R   GVR     DG    V    I
Sbjct: 650 DELVSVVVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRSIRRADGDWI-VAGGLI 708

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +G+  +    R Y +        +  RGG G        R G+ +++
Sbjct: 709 EDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAA 756



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 61/217 (28%), Gaps = 12/217 (5%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALH 556
                + +      ++   V  +  G ++         S      A+  +  D L   + 
Sbjct: 598 DERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSVVV 657

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           A      ++ +  G+    P   +    G   A    I       IV   + +   ++L+
Sbjct: 658 ATEEHDGVVFTKRGQVLRFPLAEV-RRTGRATAGVRSIRRADGDWIVAGGLIEDGVEVLL 716

Query: 617 VSSKGNAFIVEESEI----IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           V+S+G                        L     E +        D V +V    +++ 
Sbjct: 717 VTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAAAFVRPEDEVLIVSSQGQMIR 776

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
             I  I    R   GV+L S +       +      G
Sbjct: 777 VRIGDISNQGRYATGVKLISLQAEESVASVGVVPESG 813


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/737 (32%), Positives = 380/737 (51%), Gaps = 62/737 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++S+   +   YL YA+S I  RAIPDLRDG KPVHRRI++ + E G      ++K    
Sbjct: 12  SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G+ HPHGD ++YD+LVR+AQ F     LI GQGNFG++DGD  AAYRYTE R+ +
Sbjct: 72  VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            AE +L  +++D VDF   Y  E  EP V P+++PN+L NG  GIAVGMAT IP HN+ E
Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LALIDNP+++ E+L+++I  PDFPTGG+I+  R    ++Y  GRG   +R +   
Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLIL-GRSGARKAYTEGRGSVVIRCKTRT 250

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EIPYQV K+ +IE+IAE    KRI  +  ++DES      V+    R
Sbjct: 251 EEIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKR 310

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              P++++  +F  + M+  F  NM  L+ G  P+ + L G L  +L  R +V+ +R++F
Sbjct: 311 DATPEVVLNQLFRFTPMQVSFACNMLALN-GGKPETLTLRGFLTAFLDFREDVVAKRTAF 369

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413
            +     R  IL GL +A  N+DE++A IR+                             
Sbjct: 370 ELNKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLID 429

Query: 414 ----KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
               K      ++L++ QV AIL+LRL+ L +L   ++  EL+ L A+  +   +L S +
Sbjct: 430 DPTHKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRE 489

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + ++ E+REV+E  +       RRT   E+         + +IE+E + V ++  G+
Sbjct: 490 RILSIVSDELREVRERHAVP-----RRT---EIVDWSGDMEDEDLIEREDMVVTVTQGGY 541

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          K     LS    KE D +     A+T  ++L  +TDG  Y L    L 
Sbjct: 542 IKRTALADFRSQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 601

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633
                  G+AI  ++ +     I      D          ++  +S G+      S+   
Sbjct: 602 LGGRTSRGKAIVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTN 661

Query: 634 NTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVR 688
             R GK  +K+  +  + LV   +    D V +V +  + + F +  +     R   GVR
Sbjct: 662 VMRNGKIAMKLPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVR 721

Query: 689 LQSYKDGGISDVICFKI 705
               ++G    V+   +
Sbjct: 722 GIRLQNG--DKVVSMAV 736



 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVG 665
           +   LL +++KG   +          R G+             +  V  V   D + +V 
Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSATDKAMRGGPIVSVFPVELDDQIMLVT 847

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +   +D I   SR  G             V  F   +G   +  A
Sbjct: 848 NQGQSIRVPVDGISFRSRSAG------------GVRVFNTAKGEEVVSVA 885


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 222/758 (29%), Positives = 395/758 (52%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++   EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P+ ++++L+  + GPDFPTGGI ++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGI-IQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   IV+TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKAAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +  NM  +   R P++M L  +L  ++AHR+EV+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSFNMVAI-HERRPKLMSLPELLDAYIAHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             RS F ++  + R  I+ GL+ A   +DE+IA IR        K  +++ +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++  +L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEKKLLGVIKKELKTMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDMGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L   R    G+ I  LI L  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +++  +L+ V+ +G     E ++       +    + V  ++ +  V    G  
Sbjct: 593 AVPVSSFNTGEQLIFVTKQGLVKRTELAQYQVQRYTRPLVAVNVKEDDDVIAVYATDGCG 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           H+ +   +   L+F+ ++I  +  R  GV+    K+G      C  ++ EG +++    R
Sbjct: 653 HLWLATHDGHALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEEGGSFVVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   +S   + + +
Sbjct: 713 GAVKKVAMSEFEPSSRAKRGVVIVREV-KSNPHRVVGA 749


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 284/768 (36%), Positives = 430/768 (55%), Gaps = 41/768 (5%)

Query: 1   MGVDNISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN  +  +     E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MDDDNTLDLFTEPPPPEG-DFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRIL 59

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNF
Sbjct: 60  FAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNF 119

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+ E  EP + P++ P +L N
Sbjct: 120 GSRDGDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMKNYDGEFDEPRLLPARLPFVLLN 179

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+  A +A+I NP+I+  +L+E++ GPDFP GG I+ S   
Sbjct: 180 GASGIAVGLATEIPSHNLREVAAATVAMIRNPKITHAELMEHVPGPDFPGGGQIISSEAE 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-------- 290
           I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E          
Sbjct: 240 ISAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGK 299

Query: 291 ----------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES +D  VR+V  PK+  +D    + ++   + +E+ 
Sbjct: 300 KALTPEQLQGKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESN 359

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +L
Sbjct: 360 ASLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVFL 419

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK
Sbjct: 420 NIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELRDEK 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K++ LL S       +  E+       + +   G  R T  +  +       +A +  E
Sbjct: 480 AKLEELLGSESAMKRLLIKEVE------ADAKQYGDERRTLIQQEKRA---TYEARVVDE 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVV+S +GW+R+LK H +D +   FK GDSL  A    T D ++   ++G+ Y++   
Sbjct: 531 PVTVVVSQKGWVRALKGHGLDTAGFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVAVA 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L  GRG G  +  LI++     ++  +   +   LL+ SS G  FI +  ++++  + G
Sbjct: 591 SLPGGRGDGVPVTSLIEMESGSHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K+F+ + +       + +  D   VA +    +LL+F ID++  +   G+GV L +  D 
Sbjct: 651 KSFMTIDAGAAPLAPMPMLPDATQVACLSSAGRLLVFGIDEMKTLSGGGRGVTLMAL-DD 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
             + V    I      +  A R     E  L G      +GKR   G 
Sbjct: 710 KETLVQALAINAAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/668 (37%), Positives = 412/668 (61%), Gaps = 16/668 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSI 675
            ++L+F +
Sbjct: 650 GRMLMFPV 657


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/754 (33%), Positives = 409/754 (54%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  +++   +   +L YA+S I  RA+PD RDG KPVHRRI++ M+E+GL + A +KK
Sbjct: 74  DNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNAQYKK 133

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGDSAAA RYTEA
Sbjct: 134 SARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMRYTEA 193

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +++G+ +D VDF   Y+  + EP V PS+ PNLL +G +GIAVGMAT+IP H
Sbjct: 194 RMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATTIPPH 253

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A +AL  N EI+IE+L+++I GPDFPTG  I+     I+ +Y  GRG   +R+
Sbjct: 254 NLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEIL-GTSGIITAYETGRGAIVLRS 312

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I++TEIPY+V+K  +IEKIA L   KRI  + +IRDE++     V+ 
Sbjct: 313 KSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIRVVI 372

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +++ P++++  +  L++++  +  NM  L  G  P+++ L   L  +L H+ +V+ R
Sbjct: 373 DLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGE-PKLLNLKQALDVYLKHQIDVVTR 431

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R  IL+GL+IA  NIDE+I +IR   N++  +  +++ F L+E Q  AI
Sbjct: 432 RTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMASFKLSEIQAKAI 491

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   + + EL+ L  E    +++LNS ++  + I  E+ E+K  F     
Sbjct: 492 IDMRLGRLTSLAIEKTQDELNALKQEIAGYENILNSHEKLIDLIVSELEEIKARF----- 546

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R T    S        + +I  + I + +S  G+++          K   V +   
Sbjct: 547 -GDERRTIINTSDYG-IIKDEDLIPNKNIAITLSKNGYVKRTPLTDFRSQKRGGVGVYTH 604

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
                D +   L  HT   IL+ ++  K Y + A  +   S +  G      I+++  + 
Sbjct: 605 KTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINFINIDKKEK 664

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +V+      Y     LL ++  G A              GK  L +  ++++  V+ +  
Sbjct: 665 VVSLLSVEEYFEGTYLLTITKNGIAKKTSIEAYKRIQSNGKFALSLKEDDELFKVITIDD 724

Query: 659 DHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           +   ++G  N K++ F   +I  M R   GV      D     V   K  EG   +    
Sbjct: 725 EDSVIIGANNGKVVHFDSKEIRPMGRTASGVIAMKL-DKKERVVGVGKSSEGKYVLSIGD 783

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + + +        L  R   G +      ++GK 
Sbjct: 784 KGFGKKTELESYRLSHRNVKGVISLNV-KKAGKL 816



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 13/221 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      + L      +    + I+  G  +     +          AL  KE D L  
Sbjct: 659 IDKKEKVVSLLSVEEYFEGTYLLTITKNGIAKKTSIEAYKRIQSNGKFALSLKEDDELFK 718

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            +     D +++ + +GK     +  +   GR     I   + L+  + +V         
Sbjct: 719 VITIDDEDSVIIGANNGKVVHFDSKEIRPMGRTASGVIA--MKLDKKERVVGVGKSSEGK 776

Query: 613 KLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
            +L +  KG     E     +     KG   L V    K+  V  V G +    +     
Sbjct: 777 YVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVKKAGKLNYVGIVKGYEEAIFLTNEGI 836

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
            +   ++Q+ E SRG KGV+L + KD      I     E +
Sbjct: 837 AIRTELNQVSETSRGTKGVKLITLKDKDYIASIAIINTEKI 877


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/747 (37%), Positives = 422/747 (56%), Gaps = 38/747 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL   A   KSAR+V
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +++  VDF   Y+ E  EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 141 AKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+A+I NP++   +L++YI GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 201 AAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIE 260

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDI 301
           E+ RG W +V+TE+P      +++E+I E                        + LL+ +
Sbjct: 261 ELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAV 320

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+A R   + RR+  R+  +D R+ IL+G +I +LNIDE+I IIR  D+PK  +++
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMA 440

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK +++ LL S       +  EI
Sbjct: 441 AFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGSESAMKRLLIKEI 500

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                    +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 501 E------GDAKQYGDERRTLIQQEKRA---TFEARVVDEPVTVVVSQKGWVRALKGHGLD 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T D ++   ++G+ Y++    L  GRG G  +  LI+L   
Sbjct: 552 AAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESG 611

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  FI +  ++++  + GK+F+ + +  +    + +  D
Sbjct: 612 SHLMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPD 671

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             H+A +  N +LL+F +D++  +   G+GV L +  D   + V    I      +    
Sbjct: 672 ATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMAL-DDEETLVQALSINNAGVVLIGTR 730

Query: 717 RSYNRSEN-----DLLGWLGKRGGVGS 738
           R     E       L   +GKR   G 
Sbjct: 731 RGGRVDEEKVSGAVLAPHIGKRARKGR 757


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 391/758 (51%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  V+F   +++  +EPVV P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSSIALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +A +  ID P+ ++++L+  I GPDFPTGGI ++ ++ I ++Y  G+G   +
Sbjct: 181 PHHLGEVIDAVIMRIDKPKCTVDELMTVIQGPDFPTGGI-IQGKDGIKKAYETGKGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E+   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+      +
Sbjct: 240 RGKAAIEQGKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +  NM  +   R P+++ L  +L  ++ HR+EV+
Sbjct: 300 VIELKKDADAEGILNYLYKNTDLQVPYSFNMVAI-HERRPKLLSLPELLDAYIEHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             RS + ++    R  I++GL+ A   +DE+IA IR        K  +++++  TE Q +
Sbjct: 359 TNRSQYELKKAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAKYEFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L    +++ ++LNS K+    I  E++ +K+ ++  
Sbjct: 419 AIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNSEKKLLAVIKRELKAMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R T  E    +     + MI  E + V ++  G+++     S + S       K
Sbjct: 479 ------RRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRTSYRSYNASNGQDFGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D L   +  +TTD +LL +  G     P   L     +  G+ I  LI L+ + D++ 
Sbjct: 533 ESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRWKDVGQHISNLIPLDRDDDLIA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH 660
           A     +D    L+ V+ +G     E  +       +    + V   +++  V    G  
Sbjct: 593 AVPVKRFDEPLSLVFVTKQGMVKRTELGQYKVQRYTRPLVAINVKEGDEVIHVHATDGQQ 652

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
            + ++      L F   +I  +  R  GV+  + K+G         + EG    +    R
Sbjct: 653 SLLLITNQGYGLWFDEAEISMVGVRAAGVKGINLKEGDHVVSAHPIVAEGEQYLVIVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   ++   + ++S
Sbjct: 713 GAIKKMPLSEFTKTSRAKRGVVMLREL-KTNPHRIVAS 749


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/729 (34%), Positives = 371/729 (50%), Gaps = 61/729 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   YLAYA+S I  RA+PD+RDG KPVHRRI++AM E G      ++KSAR VG+V+GK
Sbjct: 1   MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR+ + +  +L 
Sbjct: 61  YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++ D VDF+  Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN  E+ +A LA
Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +I NP I +++L++ I GPDFPTGGII+  R  I  +Y  GRG   VRAR  +EE+ +  
Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIEEIRKDR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQV K+ L EKIA+L+ +K I  + DIRDES      V+    R   PD++
Sbjct: 240 QAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  + ++T F  NM  L  G+ P+ M L  IL+ +L  R EV+ RR+ F +     
Sbjct: 300 LNQLYRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFDLNKARD 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------------- 417
           R  +L GL++A  NIDE+IA+IR                                     
Sbjct: 359 RGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVII 418

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             +  LTE Q   IL LRL+ L  LE  +I+ EL  +  +  ++ +++ S  ++   +  
Sbjct: 419 DGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMRE 478

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+   +   +             E+S A      +++IE   + V I+  G+I+      
Sbjct: 479 ELLAARAEVATP--------RVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEV 530

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
                      +A   +  D +  + +AHT   ++  S+ GKAY +   +L        G
Sbjct: 531 FRSQNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKG 590

Query: 588 EAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            A+  L+       I                 L   ++ GN      S+       G   
Sbjct: 591 RALVNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIA 650

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG-KGVRLQSYKDGG 696
           +K+   + +  V     G  V +  +N + + F I    +     RG  GVR     +G 
Sbjct: 651 MKLDEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEG- 709

Query: 697 ISDVICFKI 705
              VI   I
Sbjct: 710 -DAVISLCI 717



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKVTGDHVAVVGENRKL 670
           V+  G        +   + R G+    +        +E +  +  + G  V +V +  +L
Sbjct: 786 VTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRL 845

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
           +   + Q+  MSR   GV L    D   + +  F + E  T
Sbjct: 846 IRLPVSQVRVMSRQASGVTLFRLND-TETVICVFPVLEDDT 885


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 244/755 (32%), Positives = 393/755 (52%), Gaps = 33/755 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T      + +S+   ++  ++ YA+S I +RAIPD+RDG KPVHRR ++AM +MG   
Sbjct: 8   AGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAMWDMGNTS 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSAR+VG+V+GK HPHGD S+YD++V++AQPF  R+PL+ GQGNFG++DGD+AAA
Sbjct: 68  DKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSVDGDAAAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R+   AE +L+ +D++ V+F   Y+E   EP V PSK PNLL NGT GIAVGMA
Sbjct: 128 SRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTDGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T +P HN++E+C A    +D P + +E+LL+ + GPDFPTGGI++   + +   Y  G+G
Sbjct: 188 TKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILM-GVDGVKNIYATGQG 246

Query: 249 GFRVRARWCVEEVGRGSW--CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              VR    +EE   G+    I+VTE+PYQV K++ I  IA+++  K++  + DIRDES 
Sbjct: 247 RIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISDIRDESD 306

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+F   +     +++ +++  + +E+ F      +  G  P+++ L  +L  ++ 
Sbjct: 307 KDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDG-TPKLLNLPALLGNFVH 365

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           HR EV+ RRS F ++    RV IL GLL A  +ID+IIA IR  D     +  ++S F L
Sbjct: 366 HRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALISGFGL 425

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE+ +I  E   L AE  K++++L S +   ++I  E  E+ 
Sbjct: 426 DELQANAILQMQLRRLAALEQQKIVDEKSTLEAEILKLETILASEENIKDEIRRETSEIA 485

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
             F  +     RRT   E++        + +IE + + V I+   +I+          + 
Sbjct: 486 LKFGDA-----RRT---EITLDASDLSTEDLIEDKTVLVSITTANYIKRMDLDTYRKQRR 537

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
               ++ +  KE D +     A   D +L  +  G+ Y L    +   S    G+ I  L
Sbjct: 538 GGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNL 597

Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           ++L  ++ + T      +     LL  +  G    + + E       G   +++   +K+
Sbjct: 598 LNL-KDEVVTTVIPIREFRKDRYLLFATQLGQVIKIPQDEFSFPRSTGTNAIRLRENDKL 656

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
             V+       V +       L F  D +  + RG  GV     +  G   ++   + E 
Sbjct: 657 VDVITTDNTKEVVLSTRFGYGLRFHEDTVRIVGRGASGVIGMRLR--GNDTIVALTLVEK 714

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +      + +           R  +G    + 
Sbjct: 715 DHLLSITDAGFGKRTEFDDFRGHGRATMGVKNMQV 749



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 8/180 (4%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             S   +A+  +E D L   +    T  ++L +  G  Y L      + R  G     +I
Sbjct: 640 PRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFG--YGLRFHE-DTVRIVGRGASGVI 696

Query: 595 DLN-HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKL 652
            +     D + A        LL ++  G     E  +   + R       +    + +  
Sbjct: 697 GMRLRGNDTIVALTLVEKDHLLSITDAGFGKRTEFDDFRGHGRATMGVKNMQVERDVVIH 756

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEGL 709
              V   D + V+  +  ++  S++ I    RG KGV++    +   +  V       G+
Sbjct: 757 SRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDKVIGVAIVTPEPGV 816


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 266/840 (31%), Positives = 413/840 (49%), Gaps = 111/840 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  ++NPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+  R   +M L  I+  ++  R+EVL
Sbjct: 300 VIDLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPA-LMSLKEIITAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+        R T  E S  D     + +I +E + + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEES--DADIEAEDLIPQEDMVIT 530

Query: 524 ISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K                   KE D +      +T    L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRL 590

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEES 629
               L        G A+  +  L+  + I          D    ++  ++ GN      +
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAYGNIRRNSLA 650

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +K+   +K+  V      DHV +     K + F +  + +  SR   G
Sbjct: 651 DFHYIPSNGKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTW----------------------------------- 711
           VR           VI   I  G+                                     
Sbjct: 711 VRGIKL--VKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLND 768

Query: 712 ------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                             +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 769 LGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 828



 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L   + +     V       +R  KS + D +  +
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSD-----VRQFKSRNSDGVRGI 714

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 715 KLVKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 767

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 768 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVV 826

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 827 ASFPVEQGDNIMLITDKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 265/748 (35%), Positives = 412/748 (55%), Gaps = 41/748 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 21  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLGPGAKPVKSARVV 80

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI G GNFG+ DGD+AAA RYTEAR+T  
Sbjct: 81  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPF 140

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           + L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++E+
Sbjct: 141 SRLLLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREV 200

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +ALI  P +S E+L   + GPDF  GG I+     I + Y  GRG  + RARW  E
Sbjct: 201 AQACVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADIAQIYAGGRGSLKARARWRFE 260

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDI 301
           E+ RG W +VV E+P      +++E+I E                     A  + LL+ +
Sbjct: 261 EMARGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKKSLTTDQQQAKAVMLNLLDAV 320

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK   +D D  + ++   + ME+  P+N+  +     P+   L  
Sbjct: 321 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSVPVNLVCIGTDGRPRQKGLRD 380

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA R + + RR+  R+  +  R+ +L+G ++ YLN+DE+I  IR  D+PK  ++ 
Sbjct: 381 ILTEWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPKAALMQ 440

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L+E Q + IL +RLR L +LE  +I+ EL +   E+ ++  LL++       +  EI
Sbjct: 441 RFQLSERQAEDILEMRLRQLARLEGIKIEQELADKREEQSRLQELLDNPASLKRLLVKEI 500

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  E +      + +  +  EP+TV++S +GW+R+ + H  D
Sbjct: 501 E------ADAKQYGDERRTLIETAERA---VLETKVVDEPVTVIVSQKGWLRARQGHGHD 551

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK+GD L  A    TTD ++ +  +G+ Y++    L S RG G+ +  +IDL   
Sbjct: 552 AAQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVAGLPSARGDGQPVTTMIDLAPG 611

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             IV +       + L+ + +G  F     ++++  R GK F+ + + + +   V +   
Sbjct: 612 TRIVHSIAASPDSRWLLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDG 671

Query: 660 --HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              +A++    K L+F +D++  +S  G+G  L        +D +   +  G   + + G
Sbjct: 672 ARQLALLSAKGKFLVFGLDEVKSLSAGGRGTILIGLDA---ADKLAQTVPVGPGGLRATG 728

Query: 717 RSYNRSEND------LLGWLGKRGGVGS 738
              N+   D      L  ++GKR   G 
Sbjct: 729 IYRNKLTEDVLAGAALEPYVGKRARKGR 756


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 272/750 (36%), Positives = 455/750 (60%), Gaps = 24/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+  D  S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A L++  +    VD++  ++    EPV+FPSK P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A + L++NP+  +  LL+ + GPDF     I+ S E + E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--SAEDVR 310
           +A W      +    I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E VR
Sbjct: 244 QAFWQ-----QDKNQIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+ 
Sbjct: 299 LVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LLAE+  I+ +L+S  +    I  E+ E+KE+F    
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLAEQTDIEKILSSKTRLKTLIKNELLEIKEVF---- 474

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
             G  R +  +     K   ++  +  EP+TVV+S  GWIRS K H +D S+L ++  D+
Sbjct: 475 --GEERKSPIKELSGAKVFSEEETLVTEPVTVVLSAAGWIRSAKGHDIDPSSLSYRGEDT 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP  +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFRRGKSNQVSVFLDSNGKAYSLPTHSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENR 668
             K +++++ G  +I E   +I+N + GK F+K+  + ++   +KV  DH  +A +    
Sbjct: 593 DDKFMIMNTAGYGYISEFKNMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF+ID++P + +GKG ++ +        K+  ++          L  I+S  R    
Sbjct: 653 RLLIFNIDELPVLGKGKGNKIINIPTAKFIAKEELMTHAQLLSEASSLR-IESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +  + +
Sbjct: 712 KLKDLENYISTRAKRGNMLPQGYRKVDQMI 741


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/668 (37%), Positives = 412/668 (61%), Gaps = 16/668 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR
Sbjct: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+LR L KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +
Sbjct: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQ------ADA 469

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +  +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GD
Sbjct: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           S K A+   +   ++ + + G++Y +    L S RG GE +   + L     +    +  
Sbjct: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
              KLL+ S  G  F+   ++++A  R GK  + +     +   V +    D +  + + 
Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649

Query: 668 RKLLIFSI 675
            ++L+F +
Sbjct: 650 GRMLMFPV 657


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 271/749 (36%), Positives = 417/749 (55%), Gaps = 34/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YLAYA+S +K RA+P + DG KPV RRI+ AM+EM L   +   KSAR+V
Sbjct: 67  LALDRYAERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVV 126

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +
Sbjct: 127 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 186

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 187 AELLLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 246

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA   LI +PE +++ +L  + GPDFP GG ++ + ++I E+Y  GRG  R+RARW +E
Sbjct: 247 AEATCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIE 306

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           E+ RG W  +V E+P+ V  ++++ +I  L                  +    +  L+ +
Sbjct: 307 ELARGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTV 366

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES++   VRIVL PK+   + D  M  +   + +ET   +NM ++     PQ   L  
Sbjct: 367 RDESSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQ 426

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+E+I +IR  D+PKP +++
Sbjct: 427 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPALIA 486

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE ++I+ EL  L  E+  +  LL+S       I  EI
Sbjct: 487 AFGLSDVQAEDILEIRLRQLARLEGFKIEKELAELKDERAGLQHLLDSRAAMTKLILKEI 546

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           ++  + +        RRT    V+    A +    +  EP+TV++S  GW+RS + H +D
Sbjct: 547 QDDAKKYGD-----DRRTLVEAVAAVAPAEIS---VPDEPVTVIVSKNGWVRSRQGHGID 598

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + + +K GD     L   TT  ++++  +G+AYT+    L  GRG G  I  L++    
Sbjct: 599 PAGIAYKAGDFGFAVLETRTTWPLIVIDGNGRAYTVKVSELPGGRGDGAPITTLVEFQDG 658

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +               +S G  F+   ++  +  R GK F+ +   EK+    KV GD
Sbjct: 659 GKLAQVVTDTPDSVYFFANSGGYGFLCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFGD 718

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A   EN ++L+F   ++   S G+GV + +  +G     +     + +  ++ +GR  
Sbjct: 719 WIAAASENGRILVFPRPEMKTQSGGRGVIVMALDEGEALAAVAVPADDAVLAVEGSGRGG 778

Query: 720 NRSENDL-----LGWLGKRGGVGS-LVPK 742
                +L          +R   G  L PK
Sbjct: 779 KALTIELKPAQREPLRHRRARKGVPLTPK 807


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 253/791 (31%), Positives = 396/791 (50%), Gaps = 69/791 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G  + +  KK+AR+
Sbjct: 75  PVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVWSSPTKKAARV 134

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD + Y ++VR+AQ F  RYPLI GQGNFG+IDGDSAAA RYTE ++ +
Sbjct: 135 VGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAAMRYTEVKLMK 194

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L  + ED VDF   ++  + EPVV P++ P LL NG+SGIAVGMAT+IP HN++E
Sbjct: 195 IAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMATNIPPHNLRE 254

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             +A +  +++P+ S++ L+  I  PDFPTGGI V     + E YR GRG   +RAR  +
Sbjct: 255 TIDACVHALEHPDCSVDDLIALISAPDFPTGGI-VYGLSGVYEGYRTGRGRVIMRARTHL 313

Query: 259 EEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           EE GR      IVV EIPY V K  L E++ EL   K++  + ++RDES   +RI +  K
Sbjct: 314 EEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTRQIRIAIDLK 373

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
                P++++ ++F  + M+  F +NM  L  G+ P ++ L  ++  +L HRREV+ RR+
Sbjct: 374 Q-GAMPEVVLNNLFKNTQMQESFGMNMVALVDGQ-PMLLNLKQMVVYFLEHRREVVTRRT 431

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------------- 422
            FR++       IL G  IA  NIDE I +IR     +    S                 
Sbjct: 432 IFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLGFAAEITRR 491

Query: 423 --------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LT+ QVD IL + LR L  LE  +I ++    + 
Sbjct: 492 AAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKILADYAATME 551

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               +  +L+  ++    I  E+   +E +      G  R +  ++S  D    ++ +I 
Sbjct: 552 RIFDLIDILHKPERVTAIIKEELLACREAY------GDERRSTIDLSE-DTNFNKRDLIP 604

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKE--------GDSLKIALHAHTTDRILLLST 568
           +  + V ++  G+++S +    +  +   K          D ++    A+T D IL  ST
Sbjct: 605 RRDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFST 664

Query: 569 DGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y +   +L  G+ +  G  I  L+ L  N+ I        +     + + + +G  
Sbjct: 665 AGQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEFSEDRYMFLATDRGTV 724

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                S   +  R+G     +  +EK+  V   +G D V ++ +N + + F    I  M 
Sbjct: 725 RRTPLSAFSSA-RRGIRATNL-GDEKLVGVTITSGDDDVFLLADNGRCVHFKESTIRVMG 782

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R   GVR    K       +         ++ +    + +        L  RGG G +  
Sbjct: 783 RTAHGVRGMRVKADESVVALASTNDMTQAFLIATEHGFGKRTALAAYPLRNRGGKGVIAI 842

Query: 742 KGFPRSGKFLS 752
           +   ++G  +S
Sbjct: 843 RVIEKNGAPVS 853



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 68/210 (32%), Gaps = 11/210 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE----GDSLKIALH 556
           E +      L      ++    + ++RG +R     +   +    +      + L     
Sbjct: 695 EENEKISFILPIQEFSEDRYMFLATDRGTVRRTPLSAFSSARRGIRATNLGDEKLVGVTI 754

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLL 615
               D + LL+ +G+        +         ++ +  +  ++ +V     +  T   L
Sbjct: 755 TSGDDDVFLLADNGRCVHFKESTIRVMGRTAHGVRGM-RVKADESVVALASTNDMTQAFL 813

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLL 671
           + +  G       +      R GK  + +     +   +  V+    D + ++    K++
Sbjct: 814 IATEHGFGKRTALAAYPLRNRGGKGVIAIRVIEKNGAPVSGVIVKPEDDIMLLSTGGKVV 873

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
                ++PE  R   G  L    D  ++ V
Sbjct: 874 RTRAGEVPERGRNTVGNILIRMPDDTLAAV 903


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 402/757 (53%), Gaps = 30/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+   S+   ++  Y+ YA+S I  RA+PD RDG KP  RRI++AM  +        
Sbjct: 1   MAENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEVIGK HPHGD + Y++LVR+AQ F   + L+ GQGN G++DGD  AA RYT
Sbjct: 61  KKSARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++AE +L  +D+++V F   ++  ++EPVV PSK PNL+ NG+SGIAVG+AT+I 
Sbjct: 121 EVRLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNIL 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+C A  A +DN EI+ ++LL Y+ GPDFPTGGI+      ++ESY  GRG   +
Sbjct: 181 PHNLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYD-GRLIESYIKGRGSVTI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E+  RG   IV+ EIPY V K+ LIEKI  L+  + I  + D+RDES +    +
Sbjct: 240 RARVSIEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                 + +PD ++ +++  + ++   P+ MNV  +G     + +  ++K ++ HR  V+
Sbjct: 299 SIELKANTNPDYVLNALYKHTQLQITMPV-MNVAVLGNRLLNLNIRDMIKIFVEHRFGVV 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             R+++ ++  ++R  I+ GL+IA  +ID ++AIIR   N    K  +++++ +TE Q  
Sbjct: 358 INRTNYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYGITEAQAA 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+++L  L  LE   +K+E + L       +S+L S ++ +  I  E +E+ E +   
Sbjct: 418 AILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKEKVYQIIKDETKEIAEKYGID 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                 R T  E S        + +I+ E   ++++  G+         ++       + 
Sbjct: 478 ------RRTAIETSEL-VEIENEDLIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVI 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
           ++  KEGD +K  +   T D +L++++ G+ Y L    +  G     G+A   LI +   
Sbjct: 531 SIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRYAQGKAAVNLISIAEG 590

Query: 600 QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           + I             L+  + +G     +          G   +K++ ++ +  V   T
Sbjct: 591 ERIEQIINTRDFSGKNLIFATRRGRIKSTKAELFSRPRANGIRAIKLNEDDIVVGVCLST 650

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDS 714
            G +V +   N K + F    +  M R   GVR    K +  + DV+     +    I  
Sbjct: 651 GGSNVFLATRNGKAIRFMESDLRHMGRVASGVRGIRLKPNDELVDVVVADPKKN--IITI 708

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             R Y ++       L +RGG G +  K   ++GK +
Sbjct: 709 TERGYGKATLLERYRLQRRGGGGVINLKVTEKTGKVV 745



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 15/218 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
           +  E  R ++    +    K    +  + RG I+S K+          + A+   E D +
Sbjct: 586 SIAEGERIEQIINTRDFSGKN--LIFATRRGRIKSTKAELFSRPRANGIRAIKLNEDDIV 643

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                +     + L + +GKA      +L         ++  I L  N ++V   V D  
Sbjct: 644 VGVCLSTGGSNVFLATRNGKAIRFMESDLRHMGRVASGVRG-IRLKPNDELVDVVVADPK 702

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGEN 667
             ++ ++ +G              R G   + +   EK   VV+V      D+V +    
Sbjct: 703 KNIITITERGYGKATLLERYRLQRRGGGGVINLKVTEKTGKVVRVLDGEQDDNVIIFNSK 762

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
              + F+ + I    R   GVRL   + D  + D    
Sbjct: 763 GLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQIV 800


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 230/765 (30%), Positives = 404/765 (52%), Gaps = 38/765 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M ++G+   +++KK
Sbjct: 5   EKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSYKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVY+++VRLAQ +  RYPLI GQGNFG++D D  AA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM Q++E +L  + ++ VD +  +++   EP V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 125 RMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184

Query: 195 NVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           N++E   A  A ID N  +S+E++++Y+  PDFPTGGI +   + +  ++  G+G   +R
Sbjct: 185 NLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGI-IYGYDGVKNAFHTGKGRIVLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+   EE+ +G  CI+V EIPYQV KS +I +   L+   ++  +  IRDES  +   ++
Sbjct: 244 AKVHFEEI-QGRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   ++ +P++L+  +F  + ++T F +N   L  G+  Q + +  +++ ++ HR +V+ 
Sbjct: 303 YILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQ-LNIKDMIQHFVDHRHDVII 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS + ++    RV IL G      ++D +I +I+  +        ++ +F ++E+Q  +
Sbjct: 362 RRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKKFKISEDQSKS 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+SL  LE  ++K E D L+ + E   ++L     +   I  E+ ++K+ +  S 
Sbjct: 422 ILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNVLVQHSVRTKIIKEELLDIKKKYQDS- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542
                R T  + S        + +IE E + + IS+ G+I        +      V    
Sbjct: 481 -----RRTQIDYSGNKVHI--EDLIENEQVVLTISHAGYIKRTSLSEYKRQGRGGVGNRG 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600
              +E D  K  L A     +L  +  GK + L    +  G     G AIQ +I L  + 
Sbjct: 534 ATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNIIHLQQDD 593

Query: 601 DIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            +    +        Y     +++V+ KG              + G   + +   + +  
Sbjct: 594 KVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLE 653

Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ--SYKDGGISDVICFKICEG 708
            +   GD HV +  ++ +++ FS +++    R   GV     + K+  +  +IC    + 
Sbjct: 654 AILTKGDSHVFIAVKSGRIIRFSENKVRSTGRTSSGVIGIHFTNKNDMVIGMICVDGKKA 713

Query: 709 LT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + + +  N     +  RGG G        ++G  ++
Sbjct: 714 KGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQKTGYLIA 758



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 143/438 (32%), Gaps = 46/438 (10%)

Query: 292 AKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
              I L++   + S      I  F  +      +L   +  L+ +E              
Sbjct: 389 DLMIQLIKKSNNHSDACTTLIKKFKISEDQSKSILDMRLQSLTSLEV------------- 435

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
                  D ++K+    +  ++      ++   +      K        ID     +  E
Sbjct: 436 DKLKKEYDELVKKIEFFQNVLVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIE 495

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D    +   +  LT +    I    L   ++     + +       E +    LL +   
Sbjct: 496 DL---IENEQVVLTISHAGYIKRTSLSEYKRQGRGGVGN-RGATARESDFFKHLLIATNH 551

Query: 471 QWNQIACE------IREVKEIFSKSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPI- 520
           Q+     E      +R  +         GR       + + DK     L   +  KE + 
Sbjct: 552 QFLLFFTEKGKCFWLRVYEIPEGSKISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVK 611

Query: 521 ---TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
               ++++ +G I+     +        ++A+  ++GDSL  A+       + +    G+
Sbjct: 612 DYYVMMVTQKGIIKKTSLENYSRPRKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGR 671

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEE 628
                   + S       +  +   N N  ++     D   +   LL VS KG       
Sbjct: 672 IIRFSENKVRSTGRTSSGVIGIHFTNKNDMVIGMICVDGKKAKGHLLAVSEKGFGKRSNL 731

Query: 629 SEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG 684
            +     R GK    ++  +K   +  +  VT  D + ++ ++  ++  S+  I  M R 
Sbjct: 732 KDYRITNRGGKGIKTINITQKTGYLIAIKHVTDQDDLMIIKKSGIIIRISVSGIRVMGRT 791

Query: 685 K-GVRLQSYKD-GGISDV 700
             GVRL + K+   I+DV
Sbjct: 792 TQGVRLINLKENDAIADV 809


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/840 (29%), Positives = 394/840 (46%), Gaps = 114/840 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M 
Sbjct: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++D
Sbjct: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  G
Sbjct: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I+  R  I  +
Sbjct: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+R
Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    D+++  ++  + +++ F +NM  L+  +  +   L GILK
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILK 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+        
Sbjct: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                        L+E Q  AIL LRL  L  L    I++EL++
Sbjct: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E ++   +L+S  +    I  E+  VK+          RRT   E          + 
Sbjct: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGL---LDMEDED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I +E + V +S+ G+++          +      S +  ++ D +       T   +L 
Sbjct: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L   S +  G+A+  ++ LN  + I T   +           ++  
Sbjct: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           +  GN    + S+ I   R GK  +K+ S +++  V   T  + + +  +  + + F I 
Sbjct: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711

Query: 677 QIPEM-SRGK-GVRLQSYKDGGISDVICFK----------------------------IC 706
            I     R   GVR  S   G    VI                                 
Sbjct: 712 AIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769

Query: 707 EGLT--------------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           E +T                           +  + + + +  +     +  R G G   
Sbjct: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-----LKVSSEEKMKLVVKV-TGDHVAVV 664
              +L VS KG        +   + R GK        K++    +  V  V   D + +V
Sbjct: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856

Query: 665 GENRKLLIFSIDQIPEMSRG-KG-VRLQSYKDGGISDVICFKICE 707
            +   L+   +++I   SR  KG V   + KD  +  V   +  E
Sbjct: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 394/756 (52%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++ +    +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVEIEQL-QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L  G  P ++ +   L+ +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGA-PVLLNMKQALEVYLDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +VL R++ F +     R  IL GLLIA LNIDE++AII+     +  +    ++F L E 
Sbjct: 370 DVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E++++ + F
Sbjct: 430 QAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    +++I+ E + + +S  G+++              V
Sbjct: 490 GDE-----RRSEIL--YDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G     G     LI +
Sbjct: 543 GVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++ I +    +          +  G       +E I     GK  +     + +  V+
Sbjct: 603 EKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKLAISFDDNDTLYSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           K  G D + +   N  ++ F  +Q+  +SR  +GV   S   G   + +      G   +
Sbjct: 663 KTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   R+G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 76/237 (32%), Gaps = 13/237 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKA-TLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           IR  +  +   T+ G       ++ + ++  +L       +      +  G ++    + 
Sbjct: 579 IRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNE 638

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                     A+ F + D+L   +  H  D I + ST+G         L         + 
Sbjct: 639 FINILSNGKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVF 698

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SE 647
             I LN  + +       +   LL V   G   +    +     R  K    +     + 
Sbjct: 699 G-ISLNKGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
             +        + + ++    K++  S+ ++ E  +   GV+L   KD    + +  
Sbjct: 758 PVVTTTTVFGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTI 814


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 285/765 (37%), Positives = 427/765 (55%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIREADEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------TDAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F      +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDTGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/756 (33%), Positives = 394/756 (52%), Gaps = 28/756 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR++++A  +L+ +D+D VDF   Y+ E+ EP V P+ FPNLLANG+SGIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           SIPSHN+ E+    + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G 
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGN 251

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +E++ +    +VVTEIPY V K+ LIEKI EL+ A+ I  + DIRDES+ + 
Sbjct: 252 VVIRSKVEIEQL-QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P++L+  +F  + ++ RFP+NM  L  G  P ++ +   L+ +L H+ 
Sbjct: 311 IRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGA-PVLLNMKQALEVYLDHQI 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
           +VL R++ F +     R  IL GLLIA LNIDE++AII+     +  +    ++F L E 
Sbjct: 370 DVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  A+L++RLRSL  LE  ++++E   L    E    +L   K Q   I  E++++ + F
Sbjct: 430 QAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQF 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RR+         +    +++I+ E + + +S  G+++              V
Sbjct: 490 GDE-----RRSEIL--YDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  L     DS+   L   T   +L  +  GK Y + A  +  G     G     LI +
Sbjct: 543 GVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKI 602

Query: 597 NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             ++ I +    +          +  G       +E I     GK  +     + +  V+
Sbjct: 603 EKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKRAISFDDNDTLYSVI 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
           K  G D + +   N  ++ F  +Q+  +SR  +GV   S   G   + +      G   +
Sbjct: 663 KTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLS-TSSNGSLLL 721

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                   +  +     L KR   G    +   R+G
Sbjct: 722 SVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 76/237 (32%), Gaps = 13/237 (5%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKA-TLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           IR  +  +   T+ G       ++ + ++  +L       +      +  G ++    + 
Sbjct: 579 IRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNE 638

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                     A+ F + D+L   +  H  D I + ST+G         L         + 
Sbjct: 639 FINILSNGKRAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVF 698

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SE 647
             I LN  + +       +   LL V   G   +    +     R  K    +     + 
Sbjct: 699 G-ISLNKGEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTG 757

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
             +        + + ++    K++  S+ ++ E  +   GV+L   KD    + +  
Sbjct: 758 PVVTTTTVFGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTI 814


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 230/744 (30%), Positives = 371/744 (49%), Gaps = 76/744 (10%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA++
Sbjct: 52  SINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSAKV 111

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG V+G  HPHGD ++YD++VRLAQPF  RYPLI GQGNFG++DGD  AA RYTE+RMT+
Sbjct: 112 VGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRMTR 171

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L  +D D VDF   Y+E  SEP V P++ PNL+ NG++GIAVGMAT+IP HN+ E
Sbjct: 172 LAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNLTE 231

Query: 199 ICEA-ALALIDNPEISIEKL---LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +  A    L      +   L   LE++ GPDFPTGG  +  R ++V++Y+ GRG F +RA
Sbjct: 232 VLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGG-FLYGRGNLVQTYKTGRGRFMMRA 290

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   I+ TEIPYQV KS LI++IAEL+  K +  + D+RDES  D   ++ 
Sbjct: 291 KCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIVI 350

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++  ++  + M+  F +          P+ +PL+  +  ++ HR +V+ R
Sbjct: 351 ELKRGAQQEIVLNQLYKHTSMQESFSMIFLA-VHNGQPKELPLNEAIWAFIEHRIDVVRR 409

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS--------- 422
           R++F +     R  +L G  IA  ++D++I IIR        +  + S FS         
Sbjct: 410 RTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGT 469

Query: 423 ----------------------------------LTENQVDAILNLRLRSLRKLEEYQIK 448
                                             L+  Q+DAIL L+L  L +L   ++ 
Sbjct: 470 ELQGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDELL 529

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           +EL  +     + +S+L S K+    I  E+ ++++ +  +     RRTT  + S     
Sbjct: 530 NELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDA-----RRTTILDES---TE 581

Query: 509 TLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
              + +I  E + V +SN G+         R  +        +  +E D +   +   T 
Sbjct: 582 LTLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTH 641

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKL 614
             +L  +  G+ Y L    +      G G+A+  L+DL   + +VT        +    +
Sbjct: 642 AYLLCFTNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPVKDLAEEGKYV 701

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIF 673
           L  +  G        +      +G   + +  E+++       G+ V  +   +   + F
Sbjct: 702 LFATRNGTVKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRF 761

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGG 696
           +   +  M R   G R  + K   
Sbjct: 762 NEQDLRPMGRPAFGNRGITLKKND 785



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 31/243 (12%)

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE 547
           R         +   +   + + E +  + ++ G         +R +   +     +  K+
Sbjct: 724 RGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQDLRPMGRPAFGNRGITLKK 783

Query: 548 GDSLKIALH-----AHTTDRILLLSTDGKAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQD 601
            D +  A       A    R+ L +  G    +    +        + ++L         
Sbjct: 784 NDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAGESAAAQPLELAEPGELGAP 843

Query: 602 IVTAFVYDSTCKL-----------LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +++        +L           L VS  G     +       +R GK  + + S  K+
Sbjct: 844 VISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSYRLQSRGGKGVINMKSTPKI 903

Query: 651 KLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFK 704
             V  +        + V+ +  K++      +    R   GV+L     D  ++  +   
Sbjct: 904 GKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRATMGVKLLDLDTDDKVAAAMVIP 963

Query: 705 ICE 707
             +
Sbjct: 964 PED 966


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/865 (28%), Positives = 393/865 (45%), Gaps = 139/865 (16%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + ++++   +   YL Y++S I  RA+PD+RDG KPVHRRI++ M EMGL F   + KSA
Sbjct: 49  MTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 108

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG V+G  HPHGD ++YD++VRLAQPF  RY ++ GQGNFG++DGDS AA RYTE+R+
Sbjct: 109 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRL 168

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T++A  +L  +D D VDF   Y+E   EP V P++ PNL+ NG+SGIAVGMAT+IP HN+
Sbjct: 169 TRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNL 228

Query: 197 QEICEAALA-LIDNPEISIEKL---LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            E+  A ++ L  +P+ +   L   L++++GPDFPTGG +   R +I ++YR GRG F +
Sbjct: 229 TEVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLF-GRTNIPQAYRTGRGRFMM 287

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDESAEDVR 310
           RA+  +E +  G   IVV EIPYQV KS+LIE+IAEL+    I  +  ++ RDES  D  
Sbjct: 288 RAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDGM 347

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  +  +++  +   + M+  F +          P+ +PLD  ++ +L HR E
Sbjct: 348 RIVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLA-VHNGQPKELPLDKAIRAFLDHRIE 406

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------------ 412
           V+ RR++F +     R  IL GL IA  ++D++I IIR                      
Sbjct: 407 VVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTIT 466

Query: 413 ---------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                            +   L   Q+DAIL L+L  L +L   
Sbjct: 467 LRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSID 526

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  EL  +     + +S+LNS  +    IA E+ ++++ +        RRT   + +  
Sbjct: 527 ELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDP-----RRTIILDETA- 580

Query: 506 DKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHA 557
                 + +I  E + V +SN G+         R  +        +  ++ D +   +  
Sbjct: 581 --ELGLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLIIE 638

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY----DST 611
            T   +L  +  G+ Y L    +      G G+A+  L+DL   + +VT        +  
Sbjct: 639 STHAYLLCFTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILPVKNLTEEG 698

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKL 670
             +L  +  G        +      +G   + +  E+++      TG  V  +   +   
Sbjct: 699 KNILFATRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDVVFLATHDGMA 758

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGG------------------------------ISD 699
           + F+   +  M R   G R  + + G                               + D
Sbjct: 759 IRFNEQDLRPMGRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERAEALGLLAQLED 818

Query: 700 VICFKICEGLTW------------IDSAG-----RSYNRSE--------------NDLLG 728
            I       L              + SA           +                D+  
Sbjct: 819 AITEATDASLVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSENGFGKRTDVDR 878

Query: 729 W-LGKRGGVGSLVPKGFPRSGKFLS 752
           + L  RGG G +  K   ++GK  S
Sbjct: 879 YRLQSRGGTGVINMKTGTKTGKVTS 903



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 70/254 (27%), Gaps = 58/254 (22%)

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKE 547
           R         +   +   +     +  + ++ G         +R +   +     ++ ++
Sbjct: 724 RGIIAIGIDKEDELITARITTGSDVVFLATHDGMAIRFNEQDLRPMGRPATGNRGINLRK 783

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--------- 598
           GD +  A    +                P       R   EA+ LL  L           
Sbjct: 784 GDFVIGAAVTPS----------------PEAREKQRRERAEALGLLAQLEDAITEATDAS 827

Query: 599 -----NQDIVTAFVYDSTCKL--------------LVVSSKGNAFIVEESEIIANTRKGK 639
                +   V A    S+ KL              L VS  G     +       +R G 
Sbjct: 828 LVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSENGFGKRTDVDRYRLQSRGGT 887

Query: 640 TFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK- 693
             + + +  K   V  +        + ++ +  K++     Q+    R   GV+L     
Sbjct: 888 GVINMKTGTKTGKVTSISLVDDTTEMMLISQFGKIIRIDTKQVRAAGRSTSGVKLLDLDQ 947

Query: 694 DGGISDVICFKICE 707
           D  ++  +     +
Sbjct: 948 DDKVAAAMTIPPED 961


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/795 (30%), Positives = 392/795 (49%), Gaps = 70/795 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T+ ++ +    L   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL    
Sbjct: 2   TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL+ G GNFG+ID D  AA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMR 121

Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           YTE R+  ++   +L+ ++ + VDF D ++    EPVV PS+ P LL NG+SGIAVGMAT
Sbjct: 122 YTECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALI NPE+  + L++ I GPDFPTGG I+  R  I E+Y  GRG 
Sbjct: 182 NIPPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQIL-GRSGIHEAYMTGRGS 240

Query: 250 FRVRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             +R    +E +          I++T++PYQ  KS LIE+IA+++  KRI  + DIRDES
Sbjct: 241 ITMRGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDES 300

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R     +++ +I+  + ++  F  NM  L  G  PQ++ L   L  ++
Sbjct: 301 DREGMRIVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGE-PQLLTLKNFLTVFI 359

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
           + R E + RRS + ++  + R  +L+GLLIA  ++D II+IIR+ D     K  ++ +F 
Sbjct: 360 SFRVETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQFE 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAIL ++LR L  LE  +I +E   L  +   ++ +L+  ++    I  E+ ++
Sbjct: 420 LSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDILSKKERIEAIIEEELVQI 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K I               E+   +   +   +I  E   ++++ +G+I+ +   S D   
Sbjct: 480 KNIHGTP--------RCTEIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSSFDAQQ 531

Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                      KE D ++  L     D +LL S  G  Y   A  +   S    G  I  
Sbjct: 532 RATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSSRTSRGVPIVQ 591

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           ++ ++ ++ I +      +     L++++ +G       S        G   + +   ++
Sbjct: 592 MLSISKSEKITSIISVSEFKEDIFLVMLTRQGYIKKTALSAFSNIRTNGLIAISLGEGDQ 651

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKI 705
           ++ V      D V +       + F  D  Q+  + R  +GV+    K     ++I   I
Sbjct: 652 LRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRATRGVKSMRLKKK--DELISMDI 709

Query: 706 CEGLTWIDSAG-------------------------------RSYNRSENDLLGWLGKRG 734
                 I                                   + Y +        L +R 
Sbjct: 710 LSAQVTIGVEESQDNEEVLEIEPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRA 769

Query: 735 GVGSLVPKGFPRSGK 749
           G+G    K   +SGK
Sbjct: 770 GMGVRAIKF--KSGK 782



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 44/250 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
              S    + +  +  +++   V+++ +G+I+           +  L A+   EGD L+ 
Sbjct: 595 ISKSEKITSIISVSEFKEDIFLVMLTRQGYIKKTALSAFSNIRTNGLIAISLGEGDQLRW 654

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-------- 602
                  D ++L +  G A    A +      GR     ++ +     ++ I        
Sbjct: 655 VRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRAT-RGVKSMRLKKKDELISMDILSAQ 713

Query: 603 VTAFVYDSTCK---------------------LLVVSSKGNAFIVEESEIIANTRKG--K 639
           VT  V +S                        +L +++KG    +  ++     R G   
Sbjct: 714 VTIGVEESQDNEEVLEIEPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGMGV 773

Query: 640 TFLKVSSE-EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             +K  S  + +  +  V   D + +V     ++  ++  I   SR   GVR+Q   +  
Sbjct: 774 RAIKFKSGKDNLTSLRVVNAEDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDD 833

Query: 697 ISDVICFKIC 706
               +     
Sbjct: 834 AIAAVALVPP 843


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 286/765 (37%), Positives = 428/765 (55%), Gaps = 39/765 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RRS  R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIREADEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------TDAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F      +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698
           + + +       + V      VA +    +LL+F +D++  +   G+GV L +  D   +
Sbjct: 653 MTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DDKET 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
            V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 LVQALAIDPAGVVLIGTGRGGKAQDETLSYAGLAPHIGKRARKGR 756


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 372/757 (49%), Gaps = 88/757 (11%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMR 179

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++
Sbjct: 180 SKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIV 239

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ 
Sbjct: 240 IECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVT 298

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------- 416
           RR+ F ++    R  IL+GL +A  NIDEII +IR    P                    
Sbjct: 299 RRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAM 358

Query: 417 --------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                  ++ LTE Q  AIL+LRL  L  LE  +I  E   LL 
Sbjct: 359 LERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLE 418

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I 
Sbjct: 419 EIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIA 470

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST
Sbjct: 471 REDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFST 530

Query: 569 DGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G  
Sbjct: 531 RGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTV 590

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ----- 677
                 +       G   L +  E+ +  V    G+  + +  +  K++ F   +     
Sbjct: 591 KKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVV 650

Query: 678 --------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
                               +  M R   GVR     DG     +     EG   +    
Sbjct: 651 DENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTE 709

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             Y +  +        RG  G +  K   R+G  + +
Sbjct: 710 NGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 746



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 561 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 620

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 621 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 680

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 681 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 740

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 741 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 798

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 799 IDEIEESELPEGEEALVEND 818


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/752 (34%), Positives = 401/752 (53%), Gaps = 28/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K 
Sbjct: 31  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 90

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR
Sbjct: 91  AKIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 150

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VAE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 151 LEKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 210

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E  +A +A+I NPEI+I ++L+ I GPDFPT   I+   E ++ +Y  G+G  R+R++
Sbjct: 211 LRETIDAVIAVIRNPEITIPEILKIIPGPDFPT-SGIIIGGEGLISAYSTGKGSIRIRSK 269

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K  L+EKI +L+  K+I  + +I D S      V   
Sbjct: 270 VEIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIH 329

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  ++ ++ ++  + + M  +   + P++  +  IL  + AHRREV+ RR
Sbjct: 330 IKKDANAQVILNQLYKMTQLQVSYGITMLAILDNK-PKIFNIKEILTAYAAHRREVIVRR 388

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+GL IA  NI+++I +IR   N  + K  ++ RFSL+E Q DAIL
Sbjct: 389 TQFDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIRFSLSEVQSDAIL 448

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      +  +L    +    +  E++EV + +      
Sbjct: 449 EMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPSRVNEIVCTELQEVGDKY------ 502

Query: 493 GRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543
           G +R T   +   +  +   + +I  E I + I+   +I        +  K     +  L
Sbjct: 503 GNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGL 562

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             K  D +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ 
Sbjct: 563 SQKRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEY 622

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           I + F +   D    LL+V+ KG    ++  E     + G   + +   +++  V  +T 
Sbjct: 623 ISSVFTFRGEDMDKDLLLVTRKGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVESMTD 682

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D V +  +    L    + I    R   GV      +   + V   K  EG      + 
Sbjct: 683 KDEVMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDD-AIVGLSKYKEGEDIFVVSE 741

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             Y +           RGG G    K   ++G
Sbjct: 742 EGYGKRLGFEEFAAKGRGGKGMAYLKITEKNG 773



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 524 ISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++ +G+I+ ++           + A+  +EGD L         D +++ S  G A  +  
Sbjct: 641 VTRKGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRI-E 699

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           GN++  +G   +    + L  +  IV    Y     + VVS +G    +   E  A  R 
Sbjct: 700 GNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRG 759

Query: 638 GKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
           GK    +   EK    V      + D + ++ +    +  +   I ++ R   GVR+   
Sbjct: 760 GKGMAYLKITEKNGFSVGTGSVGSEDEIILITQQGMTIRINAFDISKLGRTAVGVRIVDL 819

Query: 693 KDGG 696
           KD  
Sbjct: 820 KDND 823


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 252/853 (29%), Positives = 397/853 (46%), Gaps = 112/853 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            ++I  ++   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG K VHRRI+  M 
Sbjct: 2   TEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGMM 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG+ID
Sbjct: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSID 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +KFPNLL NG  G
Sbjct: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP+HN+ E+ E  +ALIDNP+I ++ +++ I+GPDFPTG II+  R  I  +
Sbjct: 182 IAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIIL-GRSGIRSA 240

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG   +R    +E+       I+VTEIPYQV KS ++EKIAEL+  KRI  + D+R
Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    D+++  ++  + +++ F +NM  L+  +  +   L  ILK
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIEILK 359

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
            ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+        
Sbjct: 360 NFIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQ 419

Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     +  L+E Q  AIL LRL  L  L    I+ EL++
Sbjct: 420 RNWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNS 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E +    +L+S  +  N I  E++ +K+          RRT   E+         + 
Sbjct: 480 LGTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTP-----RRT---EIVDGLLDMEDED 531

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            I +E + V +S+ G+++          +      S +  +  D +      +T   +L 
Sbjct: 532 CIVREDMVVTVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLF 591

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVV 617
            S+ G  Y      L   S +  G+A+  ++ L   + I T               ++  
Sbjct: 592 FSSLGFVYKEKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFA 651

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676
           +  GN    + S+ +   R GK  +K+   +++  V     G+ V +  +  + + F+I 
Sbjct: 652 TKLGNVRRNKLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAIT 711

Query: 677 QIPEM-SRGK-GVRLQSYKDGGIS---------------------------DVICFKICE 707
            +     R   GVR     +                                +I   I E
Sbjct: 712 DVRVFSGRNSVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDE 771

Query: 708 GLTW-------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G                            +  + + + +  +     +  RGG G L   
Sbjct: 772 GGVLKNDSSIEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATD 831

Query: 743 GF--PRSGKFLSS 753
                  G  +S+
Sbjct: 832 TSKMDEIGPLISA 844



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-----KVSSEEKMKLVVKVTG-DHVAVV 664
              +L VS KG        +   ++R GK  L     K+     +     V   D + +V
Sbjct: 797 EQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGPLISAFPVNDKDQIILV 856

Query: 665 GENRKLLIFSIDQIPEMSR-GKG-VRLQSYKDGGISDVICFKICEGLTW 711
            +   L+   ++ I   SR  KG V   + KD  +  V      + +  
Sbjct: 857 SDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISESDIIDV 905


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 390/765 (50%), Gaps = 37/765 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+  M+E+G      +K
Sbjct: 6   QDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQPYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VG+V+GK HPHGD SVY +LVR+AQ ++ RYPL+ GQGNFG+IDGD+ AA RYTE
Sbjct: 66  KSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +AE +L+ +D++ VDF   +++   EP V P++ P LL NG+SGIAVGMAT++P 
Sbjct: 126 ARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATNMPP 185

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN+ E     +A ID+  EI I+ L++YI  PDFPTG   +   + I E + +G+G   +
Sbjct: 186 HNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGA-TIYGFQGIREVFEVGKGRILL 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E +      IV+ EIPY V K  LIE IA L+  K++  +  I DES  +   +
Sbjct: 245 RGKVEIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGMRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  +  +L+  ++ L+ +E+ F +N   L  G  P+ + L  ++  ++ HR EV+
Sbjct: 304 VVDVKKDFNSGVLLNKLYKLTALESSFNVNNIALVNG-RPRTLNLKELICYFVEHRVEVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            RR+ + +  ++RRV I+ GL+IA  +IDEI+AII +   P   +     RF LTE Q  
Sbjct: 363 VRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRLSGRFDLTEIQSR 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RLR L  LE+ ++++E   L         +L++       I  E+ EV++ F   
Sbjct: 423 AIVEMRLRQLTGLEQDKLRTEFGELKKMILCWKEILSNRNILMKIIKDELIEVRDRF--- 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
              G  R T    S  D  +        + + + IS+ G+I+              V   
Sbjct: 480 ---GDVRKTDIVYSTDD--SNSDDFYADDEMIITISHLGYIKRTPLVDFRAQNRGGVGTK 534

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           +   ++ D ++    A+    +L  +  G+ Y L    + +G     G AIQ L++++ N
Sbjct: 535 SSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPAGAKTSKGRAIQNLLNIDTN 594

Query: 600 QDIVTAF--------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             +             +  +  L+  + +G       +      + G   + V   +++ 
Sbjct: 595 DKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYSRPRQNGVKAITVHDGDEVI 654

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICE 707
            V    G + + V     + L F+ +++  M R   GV   +    D  I  +I     +
Sbjct: 655 AVKMTNGNNEIIVANRKGRALRFNENKVRSMGRLAAGVISMTLDLVDDEIIGMIIINDKK 714

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               +  + + Y +        +  RGG G        ++G  +S
Sbjct: 715 RENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITEKTGFLVS 759



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 13/197 (6%)

Query: 522 VVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           V  + RG I+        +     + A+   +GD +      +  + I++ +  G+A   
Sbjct: 618 VFCTKRGIIKKTLLNAYSRPRQNGVKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRF 677

Query: 576 PAGNLLS-GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIA 633
               + S GR     I + +DL  ++ I    + D     +LVVS +G        +   
Sbjct: 678 NENKVRSMGRLAAGVISMTLDLVDDEIIGMIIINDKKRENVLVVSEQGYGKRSRVGDYRI 737

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTG----DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
             R GK    ++  EK   +V +      + V ++ ++   +   +  +  + R   GVR
Sbjct: 738 VNRGGKGIKTLNITEKTGFLVSIKNVTEHNDVMIINKSGIAIRIKVSDLNVIGRATQGVR 797

Query: 689 LQSYKDGGISDVICFKI 705
           L + +  G       K+
Sbjct: 798 LINLEKRGDEIASVCKV 814


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 374/749 (49%), Gaps = 66/749 (8%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+  DF   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F  RY L+ GQGNFG+
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM ++A  +L  +D++ VDF D Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+ + ALA+IDNP+I +E L+EYI GPDFPT    +  R  IV
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAA-TISGRSGIV 179

Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           E+Y+ GRG   +RA+  +E +   G   I+VTEIPYQV K+RLIEKIAEL+  KR+  + 
Sbjct: 180 EAYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES +D   ++    R    ++++  ++  + ++  F +NM  L     P++  L  
Sbjct: 240 ALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVAL-DKGQPRLFNLRD 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416
           +L  ++ HRREV+ RRS + ++    R  IL+GL I+  NIDEII +IR    P      
Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358

Query: 417 ----------------------------------MVSRFSLTENQVDAILNLRLRSLRKL 442
                                                 + LTE Q  AIL+LRL  L  L
Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +I  E   LL +  ++  +LNS ++    I  E+ E++  F              ++
Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERK--------TDI 470

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIA 554
           + A      + +I +E + + +S+ G+++          +      +A   K+ D ++  
Sbjct: 471 TAAAHDISMEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERL 530

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
             A+T D IL  ST G+ Y +    L   S    G+ I  L+ L  ++ I        Y 
Sbjct: 531 WVANTHDTILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYP 590

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668
               +++ + KG        E       G   L +  ++++  V    G+  + +  +  
Sbjct: 591 EDKFVVMATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAG 650

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---ICEGLTWIDSAGRSYNRSEN 724
           K++ F+ +Q+  M R   GVR    ++G     +        E    +      Y +   
Sbjct: 651 KVVRFAEEQVRSMGRTATGVRGIRLEEGQRVVSLIVPREYEEEEANVLTVTENGYGKRTP 710

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   R   G +  K   R+G  + +
Sbjct: 711 LSEYPAKSRATKGVVSIKVSERNGSVVGA 739



 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L      ++   V+ + +G I+              + AL+  + D L   
Sbjct: 575 EADERITAILPTRDYPEDKFVVMATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGV 634

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDS 610
                   I+L S  GK        + S       ++  I L   Q +V+  V     + 
Sbjct: 635 DITDGNGEIMLFSDAGKVVRFAEEQVRSMGRTATGVRG-IRLEEGQRVVSLIVPREYEEE 693

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGE 666
              +L V+  G       SE  A +R  K  + +   E+   VV     + G+ + ++  
Sbjct: 694 EANVLTVTENGYGKRTPLSEYPAKSRATKGVVSIKVSERNGSVVGAMEVIDGNEIMLISN 753

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWIDSAG 716
              L+   ++++  + R  +GVRL     D  +  +      +    +    
Sbjct: 754 KGTLVRTRVNEVSTVGRNTQGVRLIRTADDEKVVGLQRIDEIDEDEVLIDGE 805


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 267/840 (31%), Positives = 415/840 (49%), Gaps = 111/840 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED V+FR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  +  L+ + + F +N  VL+  R   +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPA-LMSLKEIIAAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+        R T  E S  D     + +I +E + + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEES--DADIEAEDLIPQEDMVIT 530

Query: 524 ISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K                   KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRL 590

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEES 629
               L        G A+  +  L+ ++ I          D    ++  ++ GN      +
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLSDSETITNIMPLPSENDENQNIVFATAYGNIRRNSLA 650

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +K+   +K+  V      DHV +     K + F +  + +  SR   G
Sbjct: 651 DFHYIPSNGKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTW----------------------------------- 711
           VR           VI   I  G+                                     
Sbjct: 711 VRGIKL--VKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLND 768

Query: 712 ------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                             +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 769 LGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 828



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L   + +     V       +R  KS + D +  +
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSD-----VRQFKSRNSDGVRGI 714

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 715 KLVKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 767

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 768 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVV 826

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 827 ASFPVEQGDNIMLITDKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/746 (35%), Positives = 431/746 (57%), Gaps = 15/746 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L  +  +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2   TNLAHQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G   D  S AA
Sbjct: 62  GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++Q +E++L  + +   D++D ++    EPV  P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTEAKLSQYSEVLLSELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP +  EK+ EYI  PD PT   I+   E +++    GRG
Sbjct: 182 TDIPPHNLREVVKGTIALIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+R+ + +E        IV+T++PYQV  S++I +IA+ + AK++PL+ D+RDES   
Sbjct: 242 SYRMRSVYRIE-----KNEIVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQ 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +NMN++     PQV  +  IL EW+ 
Sbjct: 297 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIE 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R+E + RR  + +  I++R+ IL GL+IAYLNIDE+I IIR E++PK  ++SRF++ + 
Sbjct: 357 IRKETVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIRIIREEEQPKAELMSRFNIDDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L +LEE +++ E + L A+   I   L + +     I  E+++  + +
Sbjct: 417 QAEAILELKLRHLARLEEMEMRREQEELEAKAALIREQLANPESLKALIINELKDDAKKY 476

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G  R +         A  +Q  +  +P+TVV+S  GWIRS K H VD   L+F+
Sbjct: 477 ------GDDRRSPIVHRAEATAMSEQDFMPADPVTVVLSEAGWIRSAKGHEVDAENLNFR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GD         +  R+ +L   G++Y L   +L S RG GE +   +           F
Sbjct: 531 AGDQYLSHAQGKSNQRVYVLDESGRSYALAINSLPSARGLGEPLSSKLSPASGVGFKQVF 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVG 665
           + D   +++ +SSKG  F  +  ++  N + GK FL +  +  +  +  V    H+A++ 
Sbjct: 591 IADDETEVMALSSKGYGFKTQAKQLDTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLT 650

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
              +LLI  + ++P +++GKG +L   ++      +     + +  + +  +      +D
Sbjct: 651 STGRLLILELSELPVLNKGKGNKLIQLEEKDQIVFMTRLTLDEILQVVAGQQQLKLKGDD 710

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  ++GKR   G L+P+G+ ++ K L
Sbjct: 711 LQKYIGKRASKGQLLPRGYQKANKLL 736


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 397/753 (52%), Gaps = 26/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V  +     L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 2   ERVLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 62  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 122 RLSAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID+P  +++ L+  + GPDFPTGGI ++ +E I  +Y  G+G   +R 
Sbjct: 182 HLGEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGI-IQGKEGIKTAYETGKGKIVIRG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E+   G   IV+TEIPY+V K+ L++KI EL + K++  + D+RDE+      ++ 
Sbjct: 241 KATIEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVI 300

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  ++  +D++  +  NM  +   R P+++ L  +L  ++ H++EV+  
Sbjct: 301 EVRKDGNAEGILNYLYKNTDLQITYSFNMVAI-HERRPKLLNLPQMLDAYIEHQKEVVAN 359

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           RS + +Q    R  I++GL+ A   +DEIIA I   +++   K  ++ ++  TE Q +AI
Sbjct: 360 RSRYELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLMDQYGFTEPQAEAI 419

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   + Y ++ E + L  + E++ S+L S K+  + I  E+R++K+ ++    
Sbjct: 420 VTLQLYRLTNTDIYDLREEANALHDKIEQLTSILESEKKLLSVIKSELRKMKKTYADE-- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +       +I +E + V I+  G+I+     S    +   +  KEG
Sbjct: 478 ----RRTTIEEEIKEIKIEMNVVIPEEDVIVTITKDGYIKRTSLRSYSASNGQDIGMKEG 533

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L      +TT  +LL +  G     P   L     +  G+ I  +I L+ ++ + +A 
Sbjct: 534 DRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRWKDLGQHISHIIPLDRDEQLTSAI 593

Query: 607 VY--DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                    LL ++ +G           A    K    +++  ++++  V +  G  H+ 
Sbjct: 594 PIADFENGYLLFITKQGFVKKTHLVHYKAQRYSKPLVAMRLKEDDEVVNVYQTNGMGHIF 653

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +V +    L+FS ++I E+  R  GV+    KDG   DV+  +       I    R   +
Sbjct: 654 LVTQYGYGLLFSEEEIGEVGVRAAGVKGIHLKDG--DDVVSGQQATDENIILVTKRGAAK 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
                   L  R   G L+ K   ++   + +S
Sbjct: 712 KIARAEIELSTRAKRGQLLVKEV-KTNPHRLVS 743


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 275/759 (36%), Positives = 418/759 (55%), Gaps = 38/759 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + L    E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L   +   KSAR+
Sbjct: 34  PLPLDRHAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAASKHVKSARV 93

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T 
Sbjct: 94  VGDVIGKYHPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTP 153

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E
Sbjct: 154 IAELLLAEIDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 213

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   LI +P+  ++ +L  + GPDFP GG ++ S ++I ++Y  GRG  R+RARW V
Sbjct: 214 VADAVCHLIRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGSLRMRARWHV 273

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLED 300
           EE+ RG W +++ E+P+ V  + ++  I  L                  +    + +LE 
Sbjct: 274 EELARGQWRVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLKQLVLGVLET 333

Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP----QV 354
           +RDES++   VRIVL P++     D  M  +   + +E    +NM ++  G V     Q 
Sbjct: 334 VRDESSDKSPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHGPVHGGRPQQ 393

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL+EW+  R   + RR+  R+  +DRR+ IL G +IA+L+I+++I +IR  D+PK
Sbjct: 394 KNLVQILREWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIRVIRESDEPK 453

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P ++  F L+E Q + IL +RLR L +LE ++I+ EL  L  E+EK+  LL+S       
Sbjct: 454 PALIDAFGLSEIQAEDILEIRLRQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKL 513

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  EI +  + +      G  R T  E          +  +  EP+TV++S  GW+R+ +
Sbjct: 514 ILKEITDDAKKY------GDERRTLIE--SVAAVAPAEISVPDEPVTVIVSKNGWVRARQ 565

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +D +A+ +K GD     +   +T  +++L T G+AYT+    L  GRG G  I  L+
Sbjct: 566 GHGIDAAAVTYKAGDFAFALVETRSTWPLVVLDTHGRAYTIRVAELPGGRGDGVPIATLV 625

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           D  +   +      +     +  +S G  FI    E  +  R GK F+ V   EK+    
Sbjct: 626 DFQNGAKLAQVVSAEPESAWMFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPA 685

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           +V G+ +A V EN +LL+F   ++   + G+GV + +  +G     +     E +  +  
Sbjct: 686 RVLGERIAAVSENGRLLVFPRSEMKVQAGGRGVIVMALDEGESMVAVAAPADEAVLKVAG 745

Query: 715 AGRSYNRSENDLLG-----WLGKRGGVGS-LVPKGFPRS 747
            GR    +  DL        + +R   GS L  +  P +
Sbjct: 746 IGRGNKATSVDLKPAQLATLVHRRARKGSPLAIRIKPLT 784


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/706 (36%), Positives = 404/706 (57%), Gaps = 32/706 (4%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           V+ +  +  L  E    V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MS
Sbjct: 28  VEGMPKATDLSNE--ANVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMS 85

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           EMG+     FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+ID
Sbjct: 86  EMGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSID 145

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RYTEARM ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +G
Sbjct: 146 GDEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANG 205

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+ +  +ALIDNPEISI++L+ YI GPDFPTGGI +  ++ I ++
Sbjct: 206 IAVGMATNIPPHNLGEVVDGIVALIDNPEISIDELIGYIKGPDFPTGGI-INGKQGIYDA 264

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  RV  R  +E    G   IVVTE+PYQV KSRLIEKIA+L+  K++  + D+R
Sbjct: 265 YKTGRGKLRVAGRVEIETSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLR 324

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+  D   ++    +  + +L++ S++  +D++  F + M  L     P+V+ L  +L+
Sbjct: 325 DETDRDGIRIVIELKKGEESELILNSLYKFTDLQNTFGVIMLALVDNA-PRVLNLKQVLQ 383

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           ++L HR EV+ RR+ F ++    R  IL+G  IA  NI+E+I IIR        +  ++ 
Sbjct: 384 KYLEHRFEVITRRTEFELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELID 443

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +E Q  AIL++RL+ L  LE  +I  E + L+   EK+  +L+   + +  I  E 
Sbjct: 444 KFEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEA 503

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++KE F        RRT   E+  A      + +I+ E + V ++ +G+++        
Sbjct: 504 LKLKEDFGDE-----RRT---EIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
             K   + ++A +  E D +K    A   D +L+ +T GK +++    +     +  G+ 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 590 IQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           I  +I+L++++    I+    ++    L  V+  G     E +      + GK  ++++ 
Sbjct: 616 IGNIINLDNDEKVSTIIKVREFEKNRNLFFVTRNGVVKKSELTLFSNIMKAGKRAIRLND 675

Query: 647 EEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688
           ++++  +   +G   D +     N   + FS   +  M     GVR
Sbjct: 676 DDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSMGTSAVGVR 721


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 269/840 (32%), Positives = 414/840 (49%), Gaps = 111/840 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I  ++  GRG   V
Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R+ +   ++  I  L+ + + F +N  VL+  R   +M L  I++ ++  R+EVL
Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPA-LMSLKEIIEAFIDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------- 419
            RR+ FR++    +  I  GL IA L+IDE+I IIR    P                   
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418

Query: 420 ----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  +
Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L SG++   +I   ++E+K  F+        R T  E S  D     + +I +E + + 
Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEES--DTDIEAEDLIPQEDMVIT 530

Query: 524 ISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K                   KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRL 590

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEES 629
               L        G A+  +  L   + I          D    ++  ++ GN      +
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFTTAYGNIRRNSLA 650

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +K+   +K+  V      DHV +     K + F +  + +  SR   G
Sbjct: 651 DFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTW----------------------------------- 711
           VR           VI   I  G+                                     
Sbjct: 711 VRGIKL--AKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLND 768

Query: 712 ------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                             +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 769 LGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVAS 828



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L     +     V       +R  KS + D +  +
Sbjct: 660 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSD-----VRQFKSRNSDGVRGI 714

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 715 KLAKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 767

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 768 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVV 826

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 827 ASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTESREKVVSVAKIED 883


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/792 (30%), Positives = 410/792 (51%), Gaps = 58/792 (7%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S      E  E V  VS+   +   Y+ YA+S I  RA+PD RDG KPVHRRI++ M E
Sbjct: 1   MSEDQREAEVRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVG+V+GK HPHGD +VYD++VR+AQ F  RYPL+ GQGNFG++DG
Sbjct: 61  LGVTHNRPHKKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTEAR++++A  +L  +++D V++   ++    EP + P+K PNLL NG+SGI
Sbjct: 121 DAAAAMRYTEARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++P HN+ E+ +  + +I+ PE+SIE+L++ I  PDFPTG  I+   E I  +Y
Sbjct: 181 AVGMATNMPPHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTG-GIIIGYEGIKRAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  R+RA+  +E V      IV+ EIPYQV KSRL+E+IAE     ++  +  +RD
Sbjct: 240 ETGRGSIRIRAKAEIE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++       +  +++  ++  + +E  F +    L  G  P+V+ L  +++ 
Sbjct: 299 ESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINLALIDGE-PRVLTLKELIEC 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420
           ++ HR+EV  RR  + ++  ++R+ ILKGL+IA  NIDE+I +I+   +    K  +++R
Sbjct: 358 YIKHRKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q   IL++RL  L  LE  +I++E   L  +   +  +L S  + +  +  ++ 
Sbjct: 418 FELSEEQAKEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLI 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RS 532
           E K+ +  +     RRT   E+        ++  +E++ + + ++ R ++        + 
Sbjct: 478 EQKDKYGDA-----RRTNIEEM----VTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQ 528

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
                  ++ +  KE D +   + A T +R++  +  GKAY +    +   S    G+ +
Sbjct: 529 QMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPL 588

Query: 591 QLLIDL----NHNQDIVTAFVYDST-----------CKLLVVSSKGNAFIVEESEIIANT 635
             +  L       +  VTA                   L+  + +G       +++ A  
Sbjct: 589 VNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIR 648

Query: 636 RKGKTFLKVSSEEKMKLVVKVT-----------GDHVAVVGENRKLLIFSIDQIPEMSR- 683
             G   ++ +  + +  VV +             + + +  +N K + F  +++ EM R 
Sbjct: 649 STGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREMGRY 708

Query: 684 GKGVRLQSY-KDGGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             GVR     KD  I+ V    +    E    +    + Y +           RGG G +
Sbjct: 709 AAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKLDAYRETHRGGKGVI 768

Query: 740 VPKGFPRSGKFL 751
             K   R+GK +
Sbjct: 769 SIKTGERNGKVV 780



 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 16/161 (9%)

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-----STCKLLVVSSKG 621
           S +GKA       L     +   ++ +  L  + +I +    D        + + ++ KG
Sbjct: 689 SKNGKAIFFHEEELREMGRYAAGVRGM-RLEKDDEIASVEALDVGVSKEKSRAVTITEKG 747

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ 677
                +        R GK  + + + E+   VV +      D + V   +  +   S+  
Sbjct: 748 YGKRTKLDAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATSDGMVTKISVRS 807

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           I    R  +GVR+ + K G     +     + L+  +S G+
Sbjct: 808 ISVQGRNTQGVRIMNVKKGERVVAV-----DILSATESTGK 843


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/852 (30%), Positives = 392/852 (46%), Gaps = 114/852 (13%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++    E       V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MTDTTDQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR+VG+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DG
Sbjct: 61  AGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+   A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GI
Sbjct: 121 DPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN  EI +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++
Sbjct: 181 AVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGG  VRAR  +EE+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RD
Sbjct: 240 ETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R   P++++  ++  + M+T F +NM  L  G  P+ + L   L  
Sbjct: 300 ESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLAL-DGGRPRQLGLRDALDC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------ 417
           ++A R +V+ RRS F +     R  +L GL IA  NIDE+IA+IR               
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 418 -----------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       LTE Q   IL LRL+ L  LE  +I+SEL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                ++  ++ S  ++   +  E+  V+   +        R T  E S AD+    +++
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAP------RLTSIEDSVADQDD--ESL 530

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE   + V ++  G+I+                 +A   +  D +  + +AHT   +L  
Sbjct: 531 IEPGQMVVTMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFF 590

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S  GKA+      L        G AI  ++   +   +                 L+  +
Sbjct: 591 SQGGKAFREKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFAT 650

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
           + GN      ++       G   +K+   +++  V     GD V +     + + F I  
Sbjct: 651 ASGNVRRNRLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITD 710

Query: 678 --IPEM-SR-GKGVRLQSY-------------------------------------KDGG 696
             +     R   GVR                                         ++G 
Sbjct: 711 DTLRVFAGRDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGE 770

Query: 697 ISDV---------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           +  V               I          +      + +  +     +  RGG G    
Sbjct: 771 LDAVESDEAAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANI 830

Query: 742 KGFPRSGKFLSS 753
               R+G+ +++
Sbjct: 831 ALAARNGRAVAA 842



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 19/237 (8%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           + +   D G R       +  +   +  A  +   I   I++          S  +  + 
Sbjct: 671 LIAMKLDDGDR--LIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
              GD +            +  S D +A  L         G  E     ++ +     + 
Sbjct: 729 LGAGDEVISLSVLR----HVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDEAAADIQ 784

Query: 605 AFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
                      +   +L V++ G   +    E     R G+    ++   +    V  + 
Sbjct: 785 LTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASF 844

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
               GD + +V +  KL+   +DQ+    R   GV L    KD  ++ V       G
Sbjct: 845 PVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVLDDSG 901


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 219/758 (28%), Positives = 392/758 (51%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  ++L   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLDLALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +++  VDF   +++   EPVV P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +A +  ID P  ++++L+  + GPDFPTGGI ++ ++ I ++Y  G+G   +
Sbjct: 181 PHHLGEVIDAVIMRIDKPNCTVDELMTVLHGPDFPTGGI-IQGKDGIKKAYETGKGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E+   G   I++TE+PY+V K+ L++KI EL   K++  + D+RDE+      +
Sbjct: 240 RGKAVIEQAKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +  NM  +     P+++ L  +L  ++ HR+EV+
Sbjct: 300 VIELKKDADAEGILNYLYKNTDLQVPYNFNMVAIHKRH-PKLLSLPELLDAYIEHRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             RS + ++    R  I++GL+ A   +DE+IA IR        K  +++++  TE Q +
Sbjct: 359 TNRSQYELKKAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAKYKFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +K E + L    +++ ++LN  K+    I  E+R +K+ ++  
Sbjct: 419 AIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILNDEKKLLAVIKKELRAMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     + MI  E + V ++  G+++     S    +      K
Sbjct: 479 ------RRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDFGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D L   +  +TTD +LL +  G     P   L     +  G+ I  LI L+ N +I+ 
Sbjct: 533 ESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRWKDVGQHISNLIPLDRNDEIIA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH 660
           A     +D +  L+ V+ +G     E ++       +    + V  ++++  V    G  
Sbjct: 593 AVPVKQFDDSLSLIFVTKRGMVKRTELAQYKVQRYTRPLVAMNVKEDDEVIHVYVTDGQQ 652

Query: 661 -VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            + +V      L F   +I  +  R  GV+  + K+G  +         E +  + +  R
Sbjct: 653 SLLLVTNQGYGLWFDEAEISTVGVRAAGVKGINLKEGDYVVSAHPIGKEEHMYLVIATQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   ++   + ++S
Sbjct: 713 GAVKKMPLSEFEKTSRAKRGVVMLREL-KTNPHRIVAS 749


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/852 (30%), Positives = 392/852 (46%), Gaps = 114/852 (13%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           ++++    E       V++   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 1   MTDTTDQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G      ++KSAR+VG+V+GK HPHGD ++YD+ VR+AQ F  R PLI GQGNFG++DG
Sbjct: 61  AGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D  AA RYTEAR+   A  +L  +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GI
Sbjct: 121 DPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN  EI +A L LI  PE +++ L+  + GPDFPTGGII+  R  I  ++
Sbjct: 181 AVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAF 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRGG  VRAR  +EE+ +    I+V+E+PYQV K+ L+E+IAEL+ AK I  + D+RD
Sbjct: 240 ETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R   P++++  ++  + M+T F +NM  L  G  P+ + L   L  
Sbjct: 300 ESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLAL-DGGRPRQLGLRDALDC 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------ 417
           ++A R +V+ RRS F +     R  +L GL IA  NIDE+IA+IR               
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 418 -----------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                       LTE Q   IL LRL+ L  LE  +I+SEL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                ++  ++ S  ++   +  E+  V+   +        R T  E S AD+    +++
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAP------RLTSIEDSVADQDD--ESL 530

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE   + V ++  G+I+                 +A   +  D +  + +AHT   +L  
Sbjct: 531 IEPGQMVVTMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFF 590

Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVS 618
           S  GKA+      L        G AI  ++   +   +                 L+  +
Sbjct: 591 SQGGKAFREKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFAT 650

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ 677
           + GN      ++       G   +K+   +++  V     GD V +     + + F I  
Sbjct: 651 ASGNVRRNRLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITD 710

Query: 678 --IPEM-SR-GKGVRLQSY-------------------------------------KDGG 696
             +     R   GVR                                         ++G 
Sbjct: 711 DTLRVFAGRDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGE 770

Query: 697 ISDV---------------ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           +  V               I          +      + +  +     +  RGG G    
Sbjct: 771 LDAVESDEAAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANI 830

Query: 742 KGFPRSGKFLSS 753
               R+G+ +++
Sbjct: 831 ALAARNGRAVAA 842



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 19/237 (8%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
           + +   D G R       +  +   +  A  +   I   I++          S  +  + 
Sbjct: 671 LIAMKLDDGDR--LIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
              GD +            +  S D +A  L         G  E     ++ +     + 
Sbjct: 729 LGAGDEVISLSVLR----HVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDEAAADIQ 784

Query: 605 AFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
                      +   +L V++ G   +    E     R G+    ++   +    V  + 
Sbjct: 785 LTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGRAVAASF 844

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
               GD + +V +  KL+   +DQ+    R   GV L    KD  ++ V       G
Sbjct: 845 PVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVLDDGG 901


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 287/761 (37%), Positives = 427/761 (56%), Gaps = 36/761 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            + +  +  EE  + + L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+E+
Sbjct: 6   TLFDQLSPAEEPRETLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNEL 65

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L   A  +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F  RYPLI G GNFG+ DGD
Sbjct: 66  RLAPDAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGD 125

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +A L+L+ + +  V+F+D Y+    EP   P++ P  L NG SGIA
Sbjct: 126 GAAAMRYTEARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIA 185

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT IPSHN+ E+ EAA ALI NP+IS ++L+E + GPDFP GG I+ +  +I E YR
Sbjct: 186 VGLATEIPSHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYR 245

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------------- 289
            GRG  +VRARW +EE+ RG W  VVTE+P      +++E+I E+               
Sbjct: 246 NGRGSLKVRARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPE 305

Query: 290 ---IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
              +  + + +L+ +RDE++ D  VR+VL PK++ ++P   M+S+   + +E   P+N+ 
Sbjct: 306 QISLRQQFLGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLV 365

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++ +   P+   L  ILKEW+  R   +  R+S+R+  +D R+ IL+G     LNID +I
Sbjct: 366 MIGIDGRPRQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVI 425

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            IIR  D+PK  ++  F L+E Q D IL +RLR L +LE+ +I+ EL  L  EKE +  L
Sbjct: 426 RIIRESDEPKTALIETFRLSEKQADDILEIRLRQLARLEKIRIEQELAELRREKETLHDL 485

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L++       +  EI   ++ F      G  R T  E +        +  I  EP+TV++
Sbjct: 486 LDNPASMKRLVIREIEADRKKF------GDIRRTLIEEAEKAVV---EPKIADEPVTVIV 536

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S  GW+R    H + LS L FK GDSL  A    +TD +L  S+ G+ YT+    L  GR
Sbjct: 537 SQNGWVRQRTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTVAVHALPGGR 596

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  I    +   ++ IV  F       +L+ +  G  F  + +++ +  R GK+F+ +
Sbjct: 597 GDGMPITTFAETGIDETIVRYFAGSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISL 656

Query: 645 SSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGGISDVI 701
             +E +   V ++ D   +  +  N  LL+F + ++   +S G+GV L   + G      
Sbjct: 657 EKDETLLPPVAISPDDKWIGALSGNGHLLLFDMTELRALLSGGRGVILMGLEKGDKLMAA 716

Query: 702 CFKICEGLTWIDSA--GRSYNRSEN--DLLGWLGKRGGVGS 738
                +G T +  A  G  Y        +   LGKR   G 
Sbjct: 717 RPVSEKGCTVVCQARNGNPYTVRIAGGAIEAHLGKRARKGK 757


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/768 (36%), Positives = 427/768 (55%), Gaps = 41/768 (5%)

Query: 1   MGVDNISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN  +  +     E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MDDDNTLDLFTEPPPPEG-DFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRIL 59

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNF
Sbjct: 60  FAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNF 119

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T +A+L+L  +++  VDF   Y+ E  EP + P++ P +L N
Sbjct: 120 GSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLN 179

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+  AA+A+I NP++   +L++YI GPDFP GG I+ S   
Sbjct: 180 GASGIAVGLATEIPSHNLREVAAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAE 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------- 288
           I  +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I E          
Sbjct: 240 ISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGK 299

Query: 289 --------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES +D  VR+V  PK+  +D    + ++   + +E+ 
Sbjct: 300 KTLTPEQLQTKQTMLALLDAVRDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLESN 359

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +L
Sbjct: 360 ASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFL 419

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK
Sbjct: 420 NIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELKDEK 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            +++ LL S       +  EI         +   G  R T  +  +       +A +  E
Sbjct: 480 ARLEELLGSESAMKRLLIKEIE------GDAKQYGDERRTLIQQEKRA---TFEARVVDE 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++   
Sbjct: 531 PVTVVVSQKGWVRALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVA 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI    ++++  + G
Sbjct: 591 MLPGGRGDGVPVTSLIELESGSHLMHYYAASADQALLLASSNGFGFIARVGDMVSRVKAG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K+F+ + +  +    + +  D  H+A +  N +LL+F +D++  +   G+GV L +  D 
Sbjct: 651 KSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMAL-DE 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSEND-----LLGWLGKRGGVGS 738
             + V    I      +    R     E       L   +GKR   G 
Sbjct: 710 KETLVQALSINNAGVVLIGTRRGGRVDEEKVSGAALAPHIGKRARKGR 757


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/737 (33%), Positives = 376/737 (51%), Gaps = 59/737 (8%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G      ++KS
Sbjct: 12  DMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA RYTEAR
Sbjct: 72  ARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP HN
Sbjct: 132 LARAASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIAVGMATNIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             EI +A LA+I+ P+++++ +L+Y+ GPDFPTGG I+  R  I  ++  GRG   +RAR
Sbjct: 192 PGEIIDATLAMIERPDMTLDDILQYVPGPDFPTGGTIL-GRAGIRSAFETGRGSVIIRAR 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++ R    I+VTEIPYQV K+ L E+IAEL+  K++  + DIRDES      ++  
Sbjct: 251 AEVEDIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDESDRSGMRIVIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ ++  R EV+ RR
Sbjct: 311 IKRDATPEVVLNQLYRFTQLQTSFGVNMLAL-DGGQPRLMGLKDVLQAFIRFREEVILRR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409
           + F +     R  +L GL+IA  NID +IA+IR                           
Sbjct: 370 ARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERAWDAGDIAPLLA 429

Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              D+   V+  R  LTE Q   IL LRL+ L  LE  +I+ EL  +     ++  ++ S
Sbjct: 430 LIHDEGNVVVDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVATRINELLEIIAS 489

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             ++   +  E+  V+   +             +++        +++IE   + V I+  
Sbjct: 490 RPRRMEVMRNELATVRAEIATPRA--------TDIADYAGDQTDESLIEPGQMVVTITRD 541

Query: 528 GWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I+                 +A   +  D +  + +AHT   +L  S+ GKAY      
Sbjct: 542 GFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYREKVWR 601

Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEI 631
           L        G A+  L+       I                 L+  +S GN      S+ 
Sbjct: 602 LPEASPTAKGRALVNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRNRLSDF 661

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM-SRG-KG 686
                 G   +K+   +++  V     G  V +   N + + F I    +     RG  G
Sbjct: 662 RNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAGRGSSG 721

Query: 687 VRLQSYKDGGISDVICF 703
           VR     +G   + +C 
Sbjct: 722 VRGIRLAEGDEVNSLCV 738



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 28/220 (12%)

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           I   I++          S  +  +   EGD +      +     +  + + ++  L   N
Sbjct: 702 IRFQITDDTLRVFAGRGSSGVRGIRLAEGDEVNSLCVLN----HVDATVEERSAYLRIAN 757

Query: 580 LLSGRG-----HGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLLVVSSKGNAF 624
               R      +GE      D+  + +               +  +   LL+VS+ G   
Sbjct: 758 -ARRRAENAAQNGEDTDTTPDIASDDEETATDLALPPERVMEMEGAEEILLIVSNAGFGR 816

Query: 625 IVEESEIIANTRKGKTFLKV------SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                +   + R G     +           +  +  + G  V +V +  +L+   +DQI
Sbjct: 817 RSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVLAGTDVMLVTDAGRLIRLPVDQI 876

Query: 679 PEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAG 716
             MSR   GV L    D   ++ V            D+ G
Sbjct: 877 RIMSRQASGVTLFRLNDTEEVTSVFPVMDDGEDDETDATG 916


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 243/765 (31%), Positives = 384/765 (50%), Gaps = 29/765 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT    N+  + +   +++ ++ Y++S I  RA+PD RDG KPVHRRII++M E  L  
Sbjct: 2   ENTENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G   KK A IVG+V+GK HPHGD SVYD+LVRL Q F QRY ++   GNFG I GD  AA
Sbjct: 62  GGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           YRYTEA+MT++AE +++ +++D VD    Y++   EP V PSKFP LL NG+ GIAVGMA
Sbjct: 122 YRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN++E+  A  A IDN  I++++LL +I GPDFPTGGII   +  I ++YR GRG
Sbjct: 182 TNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIF-GKHGIADAYRTGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAE 307
              VR R+ +E    G   IV TE+PY V    L EKI EL   K I  +  I DE S  
Sbjct: 241 KILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDR 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R     +++  +F  + +++ F +    L  G  PQ++ L  I+K ++ H
Sbjct: 301 SGMRIVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKG-RPQILNLKQIIKCFVDH 359

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424
           R EV+ RR +F +     R  IL+ L+ A   IDE+I +I   R+E + K  ++ RF   
Sbjct: 360 RDEVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQRFGFD 419

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AI+ +RL  L  L   +++ E++ + A     + LL   ++    I  E  E+ E
Sbjct: 420 EIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCEDLLAHHEKILAIIKDETNELSE 479

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +      G  R T       + +   + +I++E + ++IS  G+I+ +           
Sbjct: 480 KY------GDDRKTDIVAGEVE-SINVEDLIKEEDMVILISKLGYIKRVSVSQYKSQGRG 532

Query: 545 FK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594
            K        E D +     A T D ++ ++T+GKAY +    +        G  I+ L+
Sbjct: 533 GKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPEASKTSRGSHIKSLL 592

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +N N+DI T      +     L + ++ G       S+      +G   +++   + + 
Sbjct: 593 AVNANEDITTIVSLKEFSENNYLFMATANGVVKKTPTSDFKNAKSRGMQAVRLDEGDTLV 652

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG 708
             +  TG D + +V    + L  + + +  M R  +GV      +G  +   I       
Sbjct: 653 SAILSTGKDELLLVSRRGQALRINEEDVRPMGRSSRGVAGLKLSEGDELCSAIRIHTEPD 712

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    +   +  +        RG  G  +       G+ + +
Sbjct: 713 SKILVVTEKGIGKRVDSAEFNAHGRGTGGQKIFGNVEDKGEIIGA 757



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHT--TDRILLLSTDGKAYTLPAGNL-LSGRGH 586
           +R +   S  ++ L   EGD L  A+  HT    +IL+++  G    + +      GRG 
Sbjct: 680 VRPMGRSSRGVAGLKLSEGDELCSAIRIHTEPDSKILVVTEKGIGKRVDSAEFNAHGRGT 739

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKV 644
           G   ++  ++    +I+ A     T  ++ ++S+G +  VE  +I    R   G   + +
Sbjct: 740 G-GQKIFGNVEDKGEIIGALCVRDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSI 798

Query: 645 SSEEKMKLVVKVTGDH 660
           +  + +  V ++  D 
Sbjct: 799 TDPDYVVGVDRIANDE 814


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 252/768 (32%), Positives = 406/768 (52%), Gaps = 35/768 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D  S+    V E VK+V +   +E+ Y+ YA+S I  RA+PD+RDG KPVH+RI++A
Sbjct: 1   MSSD-TSDLPDEVAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M   G+   A+ +KS+ IVG+ +G  HPHGDQS+YD+L R+AQ F  RYPLI GQGNFG+
Sbjct: 60  MHRSGVTSNASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD  AA RYTEARM  ++E +L  ++ D VDF+  Y+    EP V PS  PNLL NG+
Sbjct: 120 VDGDPPAAMRYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGM+T+IP HN+ E+ +A + LIDNP+ ++E L+E++ GPDFPTG   +  R +I 
Sbjct: 180 SGIAVGMSTNIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGA-NIVGRNAIH 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y+ GRG  RVRA + V++       IV+TE+P+Q  K+RLI++IA+ +    I  + D
Sbjct: 239 QAYKTGRGRLRVRAEYEVQDD-----RIVITELPFQTNKARLIQRIADHVNDGTIEGIRD 293

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    ++  P+++   +     +E  F +    L  G+ P+V+ L  +
Sbjct: 294 LRDESDRDGIRVVVELKQNAIPEVVENQLLNH-RLERTFSIISLALVDGQ-PKVLTLKEL 351

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L+ +L HRR+V+ RRS F +   + R  IL+G L A  NID+++ +IRN D     +  +
Sbjct: 352 LQHYLDHRRDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARSGL 411

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F  +E Q + I+ ++L SL  LE  +I++E +++ A  E+++++L    +    I  
Sbjct: 412 QGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLETILGDESELLGVIKE 471

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+KE ++       RRT   E +       ++ +I +E + VV++ + +++ +    
Sbjct: 472 ELLEMKEKYADE-----RRTKIVEDTS---EVTREDLIAEEDVFVVVTEQDYVKRMPIEQ 523

Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            D              KE D++     A+T D +L  +  G+ Y L    +   S    G
Sbjct: 524 FDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPEMSRTARG 583

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++   ++DL+  +DI        ++    L +V+ +G        E       G    ++
Sbjct: 584 KSAVNILDLDKGEDITAVITTDEFEEDESLSMVTQQGYVKRTAAKEFENILSTGIIAARL 643

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +K+  V    G   + V  +N   + F   +  EM R  +GV      D      + 
Sbjct: 644 EDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREMGRSARGVHGIRLDDDDEVVGMV 703

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +    +    R Y +           R G G +  K   R+G  
Sbjct: 704 AANGDVDDLLTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRNGHV 751



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 17/223 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A +     E++    +++ +G+++   +          + A   ++GD L      
Sbjct: 596 EDITAVITTDEFEEDESLSMVTQQGYVKRTAAKEFENILSTGIIAARLEDGDKLVDVKVT 655

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDST-CKL 614
             T  +L+ + +G             R  G + + +  I L+ + ++V     +     L
Sbjct: 656 DGTKDLLVSTKNGMTIRFDE---TEAREMGRSARGVHGIRLDDDDEVVGMVAANGDVDDL 712

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK----VTGDHVAVVGENRKL 670
           L V+ +G     + +E  + +R GK  + + + ++   V +    +  DH+ ++ E  ++
Sbjct: 713 LTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRNGHVTEIKTVIEDDHLVLMSERGQI 772

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
           +    + I E+ R   GV +    +      +     E    +
Sbjct: 773 MRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAEAAEAV 815


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 216/758 (28%), Positives = 391/758 (51%), Gaps = 26/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F
Sbjct: 1   MAERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 61  RKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 121 EARLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H + E+ +A L  ID P  +++ L+  + GPDFPTGGI ++ ++ I ++Y  GRG   +
Sbjct: 181 PHALGEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGI-IQGKDGIRKAYETGRGKIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   +
Sbjct: 240 RAKATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++  ++  +D++  +  NM  +   R P++M L  +L  ++AHR++V+
Sbjct: 300 VIELKKDADAEAILNYLYKNTDLQVPYSFNMVAI-HERRPKLMSLPELLDAYIAHRKDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             RS F ++  + R  I++GL+ A   +DE+IA IR        K  +++ +  TE Q +
Sbjct: 359 TNRSHFELKKANERKHIVEGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++  
Sbjct: 419 AIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYADE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T  E    +     +A+I  E + V ++  G+++     S    +   +  K
Sbjct: 479 ------RRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D L   L  +TTD +LL +  G     P   L     +  G+ I  LI +  + ++V 
Sbjct: 533 ETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELVA 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH 660
                 +++  +L+ V+  G     E S+       +    + +  ++++  V    G  
Sbjct: 593 VVPVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGRG 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGR 717
           +  +   +   L+F+ ++I  +  R  GV+    K+G     +C     E  + I    R
Sbjct: 653 LIWMATHDGYALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVCPICPEESGSLIVVTQR 712

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +           R   G ++ +   +S   + + +
Sbjct: 713 GAVKKMALSEFEPTSRARRGVMIVREV-KSNPHRIVGA 749


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 251/654 (38%), Positives = 393/654 (60%), Gaps = 14/654 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S S  L  E V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +  VD+   ++    EP V P++ PNLL NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P  ++ +L E++ GPDFPT   I+  R  + + Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IV+  +P+QV  S+++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D + LM  +F  +D+ET + +N+N++ +   PQV  L  +L 
Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR  FR+  ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF 
Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S  +    +  E+ + 
Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +      G  R +        +A  +  ++  EP+TVV+S +GW+R  K H +D + 
Sbjct: 476 AETY------GDDRRSPIVARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    + + + G++Y+LPA +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASF 589

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
               + D     ++ S  G  F+V+  ++ A  + GK  L + +   +     V
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPV 643


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 286/769 (37%), Positives = 428/769 (55%), Gaps = 43/769 (5%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +  +  A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP   PS+ P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI NP+++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAA 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYETGRGSLKVRARWKIEELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + ++   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR+ D+PK  ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L  EK K+
Sbjct: 422 EVIRIIRDADEPKAALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------TDAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GD L  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  +      +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLV------VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + + +      V      V      VA +    +LL+F +D++  +   G+GV L +  D
Sbjct: 653 MTIDTGVAAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-D 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
              + V    I      +   GR     +  L        +GKR   G 
Sbjct: 712 DKETLVQALAIDPAGVVLIGTGRGGKAQDETLSYAGLAPHIGKRARKGR 760


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/769 (31%), Positives = 390/769 (50%), Gaps = 44/769 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             N   +  +  + L    EE Y+AYA+S I  RA+PD RDG KPVHRRI++AM E+GL 
Sbjct: 21  EDNRPQDVRIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLS 80

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PL++G GNFG++DGD AA
Sbjct: 81  SKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAA 140

Query: 128 AYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A RYTE R+  ++E ++L  ++ D VDF  T++   +EP V P++ PN+L NG SGIAVG
Sbjct: 141 AMRYTECRLQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVG 200

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +A +AL+ NP  ++E+L+E++ GPDFPTGG I+   + I+++YR G
Sbjct: 201 MATNIPPHNLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQIL-GTDGILDAYRFG 259

Query: 247 RGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G   VR +  +E++ R      ++++E+PYQ  K+ L+EKIA+L+  K +  + DIRDE
Sbjct: 260 HGRLTVRGKASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDE 319

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R   P +++ +++  + ++TRF  NM  +  G  P+VM L   L+ +
Sbjct: 320 SDRFGMRIVIEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGII-GGEPKVMGLKDFLETF 378

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           +  R  V+ RR+ F+++  + R  I++G+LI   N+D ++ IIR+          +   F
Sbjct: 379 VEFRCSVIERRAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQKGF 438

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++T  Q DA+L + LR L  LE  ++K E D L AE   +  LL S  +    I  E   
Sbjct: 439 NVTPAQADALLAMPLRRLTSLESGKLKEEHDALTAEITDLKQLLESKHRVLQIIEKEALV 498

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +K+ +         R T  E    D       +I  E   V +S +G+I+          
Sbjct: 499 LKKEYGTP------RRTLVE-QGRDGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQ 551

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
              +   S    +  D++       T D +L  S  G  Y++ A  +   S    G  + 
Sbjct: 552 NRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLV 611

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ +   + I +      +     L+++++ G       S   +    G   ++++  +
Sbjct: 612 QVVPVPPGERITSVQSVSDFAEDQYLVMLTTGGYIKRTALSSFASIRSTGIVAIQLTPGD 671

Query: 649 KMKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           ++K V      D VA+  +   ++    D    + R  +GVR    +  G   +    I 
Sbjct: 672 ELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVLGRATRGVRAMRLR--GDDKLTAMDIV 729

Query: 707 EGLTWIDSAGR------------SYNRSENDLLGWLGKRGGVGSLVPKG 743
                     +             + +         G  G VG +  K 
Sbjct: 730 PASLVRTGTKKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKV 778


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 230/708 (32%), Positives = 376/708 (53%), Gaps = 29/708 (4%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG
Sbjct: 61  SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I
Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  + 
Sbjct: 180 HKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGIT 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +RDES  +    +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  
Sbjct: 240 AVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           IL  ++ H++EV+ RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  
Sbjct: 299 ILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAE 358

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++S+F L+E Q  AIL++RLR L  LE  +I+SE D+LLA    +  +L   ++    I 
Sbjct: 359 LMSKFKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIK 418

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ EVK  FS       RRT    +     +   + +IE+  + + +SNRG+I+     
Sbjct: 419 DELDEVKRKFSDK-----RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQD 471

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                K     +     K+ D ++  +   T D +L  +  G+ Y L    +        
Sbjct: 472 EFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAK 531

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G  +  L+ L+ ++ I T    +        L   +  G        E     + G   L
Sbjct: 532 GLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKAL 591

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  E+++  V+   GD   ++G      + F+   +  MSR   GV+  + ++G    V
Sbjct: 592 NLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-V 650

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               I +    +    + Y +           RGG G    K   ++G
Sbjct: 651 GASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 698



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 541 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 600

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 601 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 659

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 660 EVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 719

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 720 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 769



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 514 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 570

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 571 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 630

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 631 MSRIATGVKGVNLREGDTVVGASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQT 690

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 691 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 750

Query: 651 K 651
            
Sbjct: 751 V 751


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 269/741 (36%), Positives = 435/741 (58%), Gaps = 15/741 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSA
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEAR 135
           R VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   D  S AA RYTEA 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA 
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVL 313
           +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ 
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+       + +   G
Sbjct: 423 IKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELT------ADAKTHG 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
             R +         +     +I  EPIT ++S  GWIR+ K H  D + ++++ GD+   
Sbjct: 477 DARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLT 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC- 612
                +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T  
Sbjct: 537 HALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNG 596

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENRK 669
              +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N  
Sbjct: 597 SPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGN 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  +
Sbjct: 657 LLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIANY 716

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  R   G+ +PKGF +    
Sbjct: 717 IAHRANRGNPLPKGFGKVSNV 737


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  595 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/816 (31%), Positives = 375/816 (45%), Gaps = 91/816 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K 
Sbjct: 105 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 164

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEAR
Sbjct: 165 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 224

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  VA  +L  +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN
Sbjct: 225 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 284

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+A + LI+ P+ SI++L E I GPDFPTGGII   R  +   Y+ GR    VRAR
Sbjct: 285 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIIC-GRAGVRRGYKTGRSTMVVRAR 343

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVL 313
             +EE+      IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES   E VR+V+
Sbjct: 344 CQIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVV 403

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  DPD+++  ++  S ++  F L    L  G+  + + L  +L E+L HR  V+ 
Sbjct: 404 ELK-RGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRE-LTLKEMLAEFLRHRVTVIR 461

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR---------- 420
           RR+ F +    RR   ++GLL+A  NIDEII  IR      + K  ++            
Sbjct: 462 RRTQFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRA 521

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             ++LT  Q D IL +RL  L  LE+ ++  E   LL E     
Sbjct: 522 LGDEGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYI 581

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S  +    I  ++ E+K  F      G +R T             + +I +E + V
Sbjct: 582 DILGSPSRINGIIKEDLEEMKRRF------GDKRRTEISHEELGN-IDLEDLITEETMVV 634

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            IS+RG+I+          +     +        D ++    A T   +L  +T GK   
Sbjct: 635 SISHRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRW 694

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEE 628
               ++   +    G AI  L+ +   + I               +++ +  G       
Sbjct: 695 QKVYDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPL 754

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
            +     R G   +K+   +++     V  GD + +V  +   + F       M R   G
Sbjct: 755 EQYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMGRNTSG 814

Query: 687 VRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSE---------------------N 724
           V+  S    G   V+   + +   T +      Y +                       +
Sbjct: 815 VKGISL--VGDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGD 872

Query: 725 DLL--------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           D              KRGG G    K   R+GK + 
Sbjct: 873 DEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIG 908



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 45/247 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +  +    +   +     V+ +  G ++              + A+  +EGD L
Sbjct: 717 QMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGGIIAIKLREGDEL 776

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
             A      D I+++++DG A      +    R  G     +  I L  +  +V   V D
Sbjct: 777 VDAAVVGPGDEIIMVTSDGMAIRFRESD---SRPMGRNTSGVKGISLVGDDAVVGMVVTD 833

Query: 610 STCKLLVVSSKGNAFIVEESE-----------------------------IIANTRKGKT 640
               LL V   G                                           R GK 
Sbjct: 834 PEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKG 893

Query: 641 FLKVSS---EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              + +     K+  + +V  D  + ++    KL   S   I  + R  +GVR+ +  +G
Sbjct: 894 LRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEG 953

Query: 696 GISDVIC 702
                + 
Sbjct: 954 DELIAVV 960



 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF 641
           +  G+ ++ +     N  ++     +   +L ++++KG    +   +I  I    +G   
Sbjct: 888 KRGGKGLRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRI 947

Query: 642 LKVSSEEKMKLVVKV 656
           + V   +++  VV+V
Sbjct: 948 MNVDEGDELIAVVRV 962


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/786 (30%), Positives = 400/786 (50%), Gaps = 56/786 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +    LR  +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     +
Sbjct: 18  LEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPY 77

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VYD+LVR+AQ F  + PLI G GNFG+ID D  AA RYT
Sbjct: 78  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSIDNDPPAAMRYT 137

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E+R+  + +  +L+ ++ + VDF D ++    EP V P++ P LL NG+SGIAVGMAT+I
Sbjct: 138 ESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 197

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +ALI NP+++ +++++ I GPDFPTGG I+  R  I E+Y  GRG   
Sbjct: 198 PPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQIL-GRSGIRETYLSGRGSVT 256

Query: 252 VRARWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R    +E +          I++T++PYQ  K+ LIE+IA ++  K++  + DIRDES  
Sbjct: 257 MRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGISDIRDESDR 316

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R   P +++ ++F L+ +++ F  NM  L  G     + L  +L  +L  
Sbjct: 317 DGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPI-TLSLLRMLNVFLDF 375

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R   + +R+ + ++  + R  +L GLL+A   +DEIIA+IR+       K  +     LT
Sbjct: 376 RVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQLQEIHGLT 435

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL ++LR L  LE  +I+ E ++LL +      +L++  + +  I  E+  +KE
Sbjct: 436 DVQADAILQMQLRRLTALESDKIRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKE 495

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            F +      RRT   E+           +I  E   V+++  G+++ +           
Sbjct: 496 KFPQ-----VRRT---EILDLGSGLEDIDLIANERSVVLLTETGYLKRMPVNEFEATSRG 547

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
           +   S    +  + +K+ +  +  D +LL S  G +Y++PA  +   S    G  +  L+
Sbjct: 548 TRGKSGTRSQGEEEVKLFISCNDHDNLLLFSVRGVSYSVPAYRVPQCSRAAKGTPVVQLL 607

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + I +      +D    LL+++  G       S        G   + +   + ++
Sbjct: 608 PIPREESITSLISVSSFDDDNYLLMLTIGGFIKRTPVSAFSKIRANGLISINLEDGDALR 667

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG---ISDVICFK 704
            V   +  D V +  +    + F +  +++  + R  +GVR  + +DG      DV+  +
Sbjct: 668 WVRLASSADSVLIGSKAGMTIHFRLNDNELRPLGRTARGVRSMNLRDGDSLVSMDVLSKE 727

Query: 705 IC------------------EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           +                   EG   + ++     +        L KR G+G    K    
Sbjct: 728 LADRIASTNDDEAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSD 787

Query: 747 SGKFLS 752
           + + + 
Sbjct: 788 TDELVG 793



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 36/243 (14%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                +  + +  +  + +   ++++  G+I+     +        L +++ ++GD+L+ 
Sbjct: 609 IPREESITSLISVSSFDDDNYLLMLTIGGFIKRTPVSAFSKIRANGLISINLEDGDALRW 668

Query: 554 ALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
              A + D +L+ S  G    + L    L         ++ + +L     +V+  V    
Sbjct: 669 VRLASSADSVLIGSKAGMTIHFRLNDNELRPLGRTARGVRSM-NLRDGDSLVSMDVLSKE 727

Query: 610 --------------------STCKLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE 647
                                   +LV S+ G    V  ++     R G     +K  S+
Sbjct: 728 LADRIASTNDDEAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSD 787

Query: 648 -EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
            +++  +  +  G+ V +V E   ++  S D+I + SR   GVRLQ    G     I   
Sbjct: 788 TDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLDSGDHLSEIVLV 847

Query: 705 ICE 707
             +
Sbjct: 848 PPQ 850


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/768 (36%), Positives = 423/768 (55%), Gaps = 41/768 (5%)

Query: 1   MGVDNISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN  +  +     E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MDDDNTLDLFTEPPPPEG-DFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRIL 59

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            AM++MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNF
Sbjct: 60  FAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNF 119

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T +A+L+L  +++  VDF   Y+    EP + P++ P +L N
Sbjct: 120 GSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMPNYDGSSEEPRLLPARLPFVLLN 179

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+  A +A+I NP+I   +L+++I GPDFP G  I+ S   
Sbjct: 180 GASGIAVGLATEIPSHNLREVAAATVAMIRNPKIEHAELMQHIAGPDFPGGAQIISSDAE 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------- 288
           I  +Y  GRG  +VRARW +EE+ RG W +V+TE+P      +++E+I E          
Sbjct: 240 ISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGK 299

Query: 289 --------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES  D  VR+V  PK+  +D    + ++   + +E+ 
Sbjct: 300 KALTPEQLQTKQTMLALLDAVRDESGRDAPVRLVFEPKSSRIDQTDFVNTLLAYTSLESN 359

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +L
Sbjct: 360 ASLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFL 419

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++ F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK
Sbjct: 420 NIDEVIRIIRESDEPKVALMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKELAELRDEK 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K++ LL S       +  EI         +   G  R T  +  +       +A +  E
Sbjct: 480 AKLEELLGSESAMKRLLIKEIE------GDAKQYGDERRTLIQQEKRA---TFEARVVDE 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVV+S +GW+R+LK H +D++   FK GD L  A    T D ++   ++G+ Y++   
Sbjct: 531 PVTVVVSQKGWVRALKGHGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVA 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L  GRG G  +  LI+L     ++  +   +   LL+ SS G  F+ +  ++++  + G
Sbjct: 591 MLPGGRGDGVPVTSLIELESGSHLLHYYAASAEQALLLASSNGFGFVAKVGDMVSRVKAG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K+F+ + +       + +  D  H+A +    +LL+F ID++  +   G+GV L +  D 
Sbjct: 651 KSFMTIDAGAAPLKPMPMLPDATHIACLSSGGRLLVFGIDEMKTLSGGGRGVTLMAL-DD 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSEND-----LLGWLGKRGGVGS 738
             + V    I      +    R     E       L   +GKR   G 
Sbjct: 710 KETLVQALSINNAGVVLIGTRRGGRVDEEKVSGAALAPHIGKRARKGR 757


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/816 (31%), Positives = 375/816 (45%), Gaps = 91/816 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  + +   L E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K 
Sbjct: 81  RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 140

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+I G+  G  HPHG+  +Y +LVR+AQ +  R  LI  QGNFG++ G   AA RYTEAR
Sbjct: 141 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 200

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  VA  +L  +  D VD+  TY+E  +EP V PSKFPNLL NG+ GIAVGMATSIP HN
Sbjct: 201 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 260

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+C+A + LI+ P+ SI++L E I GPDFPTGGII   R  +   Y+ GR    VRAR
Sbjct: 261 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIIC-GRAGVRRGYKTGRSTMVVRAR 319

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVL 313
             +EE+      IVVTEIPYQ  + R+IEKIA L+   RI  +  IRDES   E VR+V+
Sbjct: 320 CQIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVV 379

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R  DPD+++  ++  S ++  F L    L  G+  + + L  +L E+L HR  V+ 
Sbjct: 380 ELK-RGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRE-LTLKEMLAEFLRHRVTVIR 437

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR---------- 420
           RR+ F +    RR   ++GLL+A  NIDEII  IR      + K  ++            
Sbjct: 438 RRTQFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRA 497

Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             ++LT  Q D IL +RL  L  LE+ ++  E   LL E     
Sbjct: 498 LGDEGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYI 557

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S  +    I  ++ E+K  F      G +R T             + +I +E + V
Sbjct: 558 DILGSPSRINGIIKEDLEEMKRRF------GDKRRTEISHEELGN-IDLEDLITEETMVV 610

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            IS+RG+I+          +     +        D ++    A T   +L  +T GK   
Sbjct: 611 SISHRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRW 670

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEE 628
               ++   +    G AI  L+ +   + I               +++ +  G       
Sbjct: 671 QKVYDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPL 730

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
            +     R G   +K+   +++     V  GD + +V  +   + F       M R   G
Sbjct: 731 EQYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMGRNTSG 790

Query: 687 VRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSE---------------------N 724
           V+  S    G   V+   + +   T +      Y +                       +
Sbjct: 791 VKGISL--VGDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGD 848

Query: 725 DLL--------GWLGKRGGVGSLVPKGFPRSGKFLS 752
           D              KRGG G    K   R+GK + 
Sbjct: 849 DEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIG 884



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 45/247 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  +  +    +   +     V+ +  G ++              + A+  +EGD L
Sbjct: 693 QMEEGEQIAECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGGIIAIKLREGDEL 752

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
             A      D I+++++DG A      +    R  G     +  I L  +  +V   V D
Sbjct: 753 VDAAVVGPGDEIIMVTSDGMAIRFRESD---SRPMGRNTSGVKGISLVGDDAVVGMVVTD 809

Query: 610 STCKLLVVSSKGNAFIVEESE-----------------------------IIANTRKGKT 640
               LL V   G                                           R GK 
Sbjct: 810 PEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKG 869

Query: 641 FLKVSS---EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              + +     K+  + +V  D  + ++    KL   S   I  + R  +GVR+ +  +G
Sbjct: 870 LRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEG 929

Query: 696 GISDVIC 702
                + 
Sbjct: 930 DELIAVV 936



 Score = 44.7 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF 641
           +  G+ ++ +     N  ++     +   +L ++++KG    +   +I  I    +G   
Sbjct: 864 KRGGKGLRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRI 923

Query: 642 LKVSSEEKMKLVVKV 656
           + V   +++  VV+V
Sbjct: 924 MNVDEGDELIAVVRV 938


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/762 (36%), Positives = 420/762 (55%), Gaps = 33/762 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +  +     +E   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM  M
Sbjct: 2   DQPDITFQADEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAM 61

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL   A   KSAR+VGEV+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD
Sbjct: 62  GLRADAKPVKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGD 121

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T ++ L+L  +D   VDF   Y+  + EP + P++ P +L NG SGIA
Sbjct: 122 GAAAMRYTEARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIA 181

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN++E+  A +A+I NP IS+  LL  + GPD+P GG I+     I + Y 
Sbjct: 182 VGMATEIPPHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYE 241

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------------- 288
            GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I E                
Sbjct: 242 SGRGSLKVRARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPE 301

Query: 289 --LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
              +    + +L+ +RDES +D  VR+V  PK+++ +    ++++   + +E+  P+N+ 
Sbjct: 302 QTQLKTTMLSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLV 361

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           ++     P+   L  IL+EW+  R   + RR+ F++  ++ R+ IL+G ++  LNIDE+I
Sbjct: 362 MIGTDGRPRQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVI 421

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            IIR  D+PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+ ++D L
Sbjct: 422 RIIRESDEPKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIEQELAKLRDEQAELDVL 481

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S      +I  EI +  + +S   D   RRT   E SRA      +  +  EP+TV++
Sbjct: 482 LKSETMMRRRIIKEIEQDAKQYS-PEDKDPRRTLIQEASRAA----AEVKVIDEPVTVIV 536

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           S +GW+R+ + H  D S   FK GD+L       T D +L   ++G+ Y++    L  GR
Sbjct: 537 SGKGWVRTRQGHGHDASQFTFKAGDNLYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGR 596

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G  +  LIDL     I   F   +  ++L+ ++ GN F+ +  ++I   + GK F+ +
Sbjct: 597 GDGVPVTTLIDLAAGTQIAHTFAGAAEQRMLIATAGGNGFVTKVGDMIGRQKAGKAFVTL 656

Query: 645 SSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI 701
              + +     +  +  HVA    N +LL+  +D++  +S  G+GV L   +        
Sbjct: 657 DEGDTLLAPTPIGEECTHVACFSANGRLLLAGLDEVKVLSAGGRGVILMELEPKETLMQA 716

Query: 702 CFKICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGS 738
                 GL       R             L+ ++GKR   G 
Sbjct: 717 VAVGAPGLMISGIGVRGGKVPPQKLAGKTLIPYVGKRARKGK 758


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 261/840 (31%), Positives = 410/840 (48%), Gaps = 111/840 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS+ G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG++DGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+  V+  +L  +DE+ VDFR  Y+  +SEPVV P++FPNLL NG SG+AVGMAT+IP
Sbjct: 121 EARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A +  IDN E+++++LL+ + GPDFPTGG I+  R  I  ++  GRG   +
Sbjct: 181 PHNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTIL-GRSGIRSAFATGRGSIVI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +E++ +    IV+ EIPYQV K +LIEKI EL+  ++I  + +IRDES +    V
Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++   D ++  I  L+ + + F +N  VL+    P +M L  I+  ++  R+EVL
Sbjct: 300 VIDLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNN-RPVLMSLKEIIVAFVDFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------- 417
            RR+ FR++    +  I  GL IA L+IDE+I I+R    P+                  
Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEIN 418

Query: 418 --------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                            + LTE Q  AIL+++L+ L  LE  ++++EL++++   ++  +
Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIA 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
            L S ++   +I   ++EV+  F+        R T  E S  D     + +I +E + V 
Sbjct: 479 FLGSEEKLMKEIKNNLQEVRNRFAVP------RKTVIEES--DADIEVEDLIPQEDMVVT 530

Query: 524 ISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+I+ +K                   KE D +      +T   +L  S  G+ Y L
Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRL 590

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEES 629
               L        G A+  +  L   + I          D +  ++  ++ GN      +
Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLADGETITNIMPLPSESDESQNIVFATAHGNIRRNSLA 650

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-G 686
           +       GK  +K+   +K+  V      DHV +     K + F +  + +  SR   G
Sbjct: 651 DFHYIPSNGKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDG 710

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAG------------------------------ 716
           VR           VI   I  G+                                     
Sbjct: 711 VRGIKL--AKNDSVISMTILNGIGVTTETKELYLKVPLAKRLETAVNNSIDSKLEKVLND 768

Query: 717 -----------------------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                                    + +  +     +  RGG+G        R+G  ++S
Sbjct: 769 LGIDNKLFLKLAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRNGNVVAS 828



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 84/296 (28%), Gaps = 68/296 (22%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIRSLKS 535
           ++  K   ++ T  GR       ++  +  T    +    ++    V  +  G IR    
Sbjct: 590 LKVYKLPLAEPTARGRALVNIFPLADGETITNIMPLPSESDESQNIVFATAHGNIRRNSL 649

Query: 536 HSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
                       A+   EGD L      + TD +LL +  GK+      ++   +     
Sbjct: 650 ADFHYIPSNGKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSD 709

Query: 590 IQLLIDLNHNQDIVTAFVYD---------------------------------------- 609
               I L  N  +++  + +                                        
Sbjct: 710 GVRGIKLAKNDSVISMTILNGIGVTTETKELYLKVPLAKRLETAVNNSIDSKLEKVLNDL 769

Query: 610 ------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
                       +   +L ++  G        E     R G     + +  +   VV   
Sbjct: 770 GIDNKLFLKLAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRNGNVVASF 829

Query: 657 ---TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                D++ ++ +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 830 PVEQDDNIMLITDKGKLIRISVNGIRIAGRSTQGVTL--FKTESREKVVSAAKIED 883


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/700 (36%), Positives = 414/700 (59%), Gaps = 25/700 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             D  S AA RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ EA + LI++P  S+  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSDL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + Y+ GRG  ++RA W  E        IV++ +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYQTGRGSIKMRAVWHKEGSD-----IVISALPHQVSGAKLLEQIAGQMRAKKLPMVE 235

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D D LM  +F  +D+E  F +N+N++ +   P+V  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW+  RRE +  R  +R+  +  R+ IL+GLLIAYLNIDE+I IIR ED+PK ++
Sbjct: 296 TQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEPKGIL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF +++ Q DAIL+ +LR L KLEE +I+ E D L  E+ K++ LL S ++    +  
Sbjct: 356 MERFGISDIQADAILDTKLRHLAKLEEVKIRGEQDALDKERAKLEELLGSERRLNTLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++   E +        RR+   E +   KA  ++ ++  E ITVVIS +GW+R  K H 
Sbjct: 416 ELKADAEKYGD-----DRRSPIVERAE-AKALTERDLMPNEMITVVISEKGWVRHAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           VD  +L++K GD+        +  ++  L +DG++Y+L A  L S RG GE I   +++ 
Sbjct: 470 VDCHSLNYKSGDNYLAHACGKSNQQVAFLGSDGRSYSLEAHTLPSARGQGEPITGRLNIT 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
               I    + +     LV S  G  F+ + S++++  R GK  + + +  ++     V 
Sbjct: 530 EGSSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVN 589

Query: 658 G---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICE 707
               D +  V    ++L+F I  +P++S+GKG ++ +        ++  +S ++      
Sbjct: 590 DLQHDEILAVTNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKAREEVVSHLLAIPSGS 649

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +T + +  R       DL  + G+RG  G+L+P+G  R 
Sbjct: 650 SIT-LYAGKRKLGLKPTDLDNFRGERGRRGALLPRGLQRV 688


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/770 (31%), Positives = 402/770 (52%), Gaps = 37/770 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L +  V    +   +E  ++ YA+S I  RAIPD+RDGFKPVHRR+++A   MG+   
Sbjct: 12  ESLNKTKVTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHD 71

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             +KKSAR+VGEVIGK HPHGD + Y+++VR+AQ F  RY L+ G GNFG+IDGDSAAA 
Sbjct: 72  KPYKKSARLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAM 131

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L+ ++++ VDF + Y+  + EP V P+ FPN+LANG+SGIAVGMAT
Sbjct: 132 RYTEARLSKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMAT 191

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ EI +A L L  N + S+ ++ + + GPDFPT   IV   + I   +  GRG 
Sbjct: 192 NIPPHNLSEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIV-GTDGINSYFETGRGS 250

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +R++  +         I++ EIPY V KS LI+KI +L+  + I  + D+RDES+ + 
Sbjct: 251 ITIRSKAEIIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREG 310

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +   P++L+  +F ++ +++ F +NM  L     P+++ +  +L+E+L H+ 
Sbjct: 311 IRIVIEVKKDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKE-PKLLNIKEVLQEYLKHQV 369

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            VL R++ F ++  + R  IL+GL IA  NID +I IIR     D+ +  +++++ LT+ 
Sbjct: 370 NVLVRKTKFELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITKYKLTKI 429

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLRSL  LE  +I+ EL  + A  +++  +L S  +Q + I+ E+  +K  +
Sbjct: 430 QAKAILDMRLRSLSNLERLKIEQELKEVKALIQELSGILKSSDKQMDIISKELINLKNTY 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538
                 G  R T   +     +   + +I  E I +  S   +         +  +   V
Sbjct: 490 ------GDERKTEI-LYGVSASIDDEDLIPVENIVISRSANNYLKRISIETYKIQRRGGV 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +  +     D +   +   T   IL  +  GK Y + A  +   S +  G     L+++
Sbjct: 543 GVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSKGVPALNLMNI 602

Query: 597 NHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             N+ I+     +   K  L + ++KG       SE  +    GK  + +   +++    
Sbjct: 603 EKNEKILVMLPVEDYSKGFLFLATTKGIVKRTSLSEYNSIKSNGKRAITLREGDQLLSAF 662

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-----------DGGISDVI 701
              G D + +   N  L  F+   +  M R   GV+  + +           D  I+ V 
Sbjct: 663 LTRGKDEIYLGASNGLLTRFNEQDVRVMGRTASGVKGINIEVKAEGRNKKKIDTSINVVG 722

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                 G   +    +   +        L +RG  G +  K   ++GK +
Sbjct: 723 ASSSLSGDLILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQNDKTGKLI 772


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 279/752 (37%), Positives = 424/752 (56%), Gaps = 34/752 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YLAYA+S +K RA+P + DG KPV RRI++AM+EM L+  A   KSAR+V
Sbjct: 54  LPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARVV 113

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD SVYD++VR+AQ F  RYPL+ GQGNFG+ DGDSAAA RYTE R+T +
Sbjct: 114 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 173

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN++E+
Sbjct: 174 AELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 233

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA   LI +PE  ++ +L  + GPDFP GG ++ S E+I ++Y  GRG  R+RARW +E
Sbjct: 234 AEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRIE 293

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           E+ RG W ++V E+P+ V  ++++ +I  L                  +    + +L+ +
Sbjct: 294 ELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDTV 353

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES++   VRIVL PK+     D  M  +   + +ET   +NM ++     PQ   L  
Sbjct: 354 RDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLVQ 413

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EW+  R   + RR+  R+  +DRR+ IL+G +IA+L+I+++I +IR  D+PKP +++
Sbjct: 414 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPALIA 473

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE ++I+ EL+ L  E+E +  +L++       I  EI
Sbjct: 474 AFGLSDVQAEDILEIRLRQLARLEGFKIEKELNELKEEREGLQHVLDNRSAMTRLILKEI 533

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  + +      G  R T  E          +  +  EP+TV++S  GWIRS + H +D
Sbjct: 534 GEDTKKY------GDDRRTLIE--TVAPIASAEISVADEPVTVILSKNGWIRSRQGHGLD 585

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +A+ +K GD     L   TT  ++++ T G+AYT+   +L  GRG G  I  L++    
Sbjct: 586 AAAISYKAGDFAFALLETRTTWPLIVIDTHGRAYTVKVSDLPGGRGDGVPIATLVEFQDG 645

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                    D     L  +S G  F+   ++  +  R GK F+ +   EK+    KV G+
Sbjct: 646 GKPAQVVSDDPATTWLFANSGGYGFLCSVADATSRQRAGKAFMALEKGEKVLAPAKVFGE 705

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            +A   EN ++L+F   ++   S G+GV + +  +G     +     + +  I+ AGR  
Sbjct: 706 WIAAGSENGRILVFPRAEMKTQSGGRGVIVMALDEGEALSAVAVPADDAVLTIEGAGRGG 765

Query: 720 NRSENDL-----LGWLGKRGGVGS-LVPKGFP 745
             +  +L      G   +R   G+ L PK  P
Sbjct: 766 KSTTVELKPAQREGLRHRRARKGAPLTPKVKP 797


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/741 (36%), Positives = 435/741 (58%), Gaps = 15/741 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSA
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEAR 135
           R VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   D  S AA RYTEA 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA 
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVL 313
           +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ 
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+       + +   G
Sbjct: 423 IKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELT------ADAKTHG 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
             R +         +     +I  EPIT ++S  GWIR+ K H  D + ++++ GD+   
Sbjct: 477 DARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLT 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC- 612
                +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T  
Sbjct: 537 HALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNG 596

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENRK 669
              +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N  
Sbjct: 597 SPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGN 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  +
Sbjct: 657 LLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIANY 716

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  R   G+ +PKGF +    
Sbjct: 717 IAHRANRGNPLPKGFGKVSNM 737


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 268/750 (35%), Positives = 450/750 (60%), Gaps = 24/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++   ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K
Sbjct: 4   QDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+  D  S AA RYT
Sbjct: 64  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+++T+ A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT IP
Sbjct: 124 ESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATDIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A +  ++NP+  ++ L + I GPDF     I+ S E ++E Y  GRGGF+ 
Sbjct: 184 SHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGFKA 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--SAEDVR 310
           +A W  E        I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E VR
Sbjct: 244 QAHWTQE-----KNEIIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEPVR 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           +V+  K+  ++   +M  +F  +D++  +  NMN++S+   P+V  L  ++KEWL  R+ 
Sbjct: 299 LVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFRKN 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  ++  F L++ Q +A
Sbjct: 359 TVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKEIIKAFKLSDIQANA 418

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL +RLR L KLE+ +++ E D LL E+ KI+ +L S  +    I  E+ E+K+ F    
Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLEEQNKIEKILGSKTRLKTLIKNELLEIKDEF---- 474

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
             G  R +  + S   K   ++  +  E ITVV+S  GWIRS K H +D S+L ++  D 
Sbjct: 475 --GEDRKSPIKESSEAKVFSEEETLVTESITVVLSEAGWIRSAKGHEIDPSSLSYRGEDK 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +     ++  + + 
Sbjct: 533 LQDFCRGKSNQLSVFLDSNGKAYSLPSYSLPSARGMGDPISGRVSADSGVKFISTLIGND 592

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENR 668
             K +++++ G  +I E   +++N + GK F+K+ +E ++   ++V  DHV  A V    
Sbjct: 593 DDKYMIMNTAGYGYISEFKNMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIG 652

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721
           +LLIF I+++P + +GKG ++ +        K+  ++          L  ++S  R    
Sbjct: 653 RLLIFEINELPVLPKGKGNKIINIPTSKFVAKEEYMAHAQLISPSSSLR-VESGKRFLTL 711

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              DL  ++  R   G+++P+G+ +    +
Sbjct: 712 KLKDLENYISSRAKRGNMLPQGYRKVDNMI 741


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/846 (29%), Positives = 406/846 (47%), Gaps = 117/846 (13%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    
Sbjct: 6   QMSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RY
Sbjct: 66  YKKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+I
Sbjct: 126 TEARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   
Sbjct: 186 PSHNLGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    
Sbjct: 245 VRGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V     R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV
Sbjct: 305 VAIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ FR++ I  +  +  G+ IA LNIDE+++II++                      
Sbjct: 364 IVRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDI 423

Query: 417 --------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +  
Sbjct: 424 RNMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYT 483

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L++     + +   + + K   +K       R T  E S  +     +++I KE + V
Sbjct: 484 KILSTDSLLMDIVKQGLLDAKAKLAKP------RNTAIEQSVDE--IDAESLIPKEEMVV 535

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++  G+++          K       A   KE D         T   +L  S  GK Y 
Sbjct: 536 TVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYK 595

Query: 575 LPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAF 624
           L    L  G     G ++  +  L+  + I +             +   ++  ++ GN  
Sbjct: 596 LKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIR 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR 683
               S+       GK  + ++  +++         DHV +     K + F++  + +  R
Sbjct: 656 RNALSDFQYVPSSGKIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQF-R 714

Query: 684 GK---GVRLQSYKDGGISDVICFKICEGLT------------------------------ 710
           G+   GVR      G    VI   +  G+                               
Sbjct: 715 GRTSDGVRAIRLSAG--DQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEV 772

Query: 711 -----------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                                   +      + +  +     +  RGGVG +      R+
Sbjct: 773 APMLEEHTIEREQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN 832

Query: 748 GKFLSS 753
           G  ++S
Sbjct: 833 GNVVAS 838



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 792 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 851

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +  KL+  ++  I  + R                V  FK  +G   +  A       E D
Sbjct: 852 DKGKLIRIAVTDIRVVGRST------------QGVTLFKTEKGEKVVSVATVVDGSKEED 899

Query: 726 LLGWLG 731
                G
Sbjct: 900 EERPSG 905


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/741 (36%), Positives = 435/741 (58%), Gaps = 15/741 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSA
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEAR 135
           R VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   D  S AA RYTEA 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA 
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVL 313
           +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ 
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+       + +   G
Sbjct: 423 IKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELI------ADAKTHG 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
             R +         +     +I  EPIT ++S  GWIR+ K H  D + ++++ GD+   
Sbjct: 477 DARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLT 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC- 612
                +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T  
Sbjct: 537 HALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNG 596

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENRK 669
              +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N  
Sbjct: 597 SPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGN 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  +
Sbjct: 657 LLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIANY 716

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  R   G+ +PKGF +    
Sbjct: 717 IAHRANRGNPLPKGFGKVSNM 737


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/843 (30%), Positives = 391/843 (46%), Gaps = 118/843 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V+L   +   YL YA+S I  RA+PD RDG KPVHRRI++ M E G      ++KSARI
Sbjct: 24  PVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSARI 83

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G+V+GK HPHGD ++YD+LVRLAQPF  R PLI GQGNFG++DGD AAA RYTEAR+ +
Sbjct: 84  NGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARLAR 143

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +L  +D D VDF+  Y++ + EP V P+ +PNLL NG  GIAVGMAT IP+HN  E
Sbjct: 144 SASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNPTE 203

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A LA+IDNP+I++++L+  I GPDFPTGG+I+  R  I  ++  G+G   VRAR   
Sbjct: 204 VIDATLAMIDNPDITLDELMTVIPGPDFPTGGLIL-GRSGIRSAFETGKGSITVRARTDF 262

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EEV  G   IV++EIPYQV K+ L E++AEL+ AK+I  + DIRDES      V+    R
Sbjct: 263 EEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELKR 322

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              PD+++  +F  + ++  + +NM  L  G  P++M L  +L  ++  R +V+ RR+ F
Sbjct: 323 DATPDVVLNHLFRFTQLQISYGINMLAL-DGGQPRLMGLRDVLSTFIRFREDVILRRARF 381

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS------------- 422
            +     R  +L GL IA  NIDE+I +IR        +  ++ R               
Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441

Query: 423 -------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                        LTE Q   IL LRL+ L  LE  +I +E+  + A   ++  ++ S  
Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   +  E+  ++   +       RR+   E++ +      +++IE   + V I+  G+
Sbjct: 502 RRMEVMREELAVIRAELNSP-----RRS---EINDSLADQDDESLIEPGQMVVTITRDGF 553

Query: 530 IR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+                 +A   +  D +  + +AHT   +L  S+ GKAY      L 
Sbjct: 554 IKRTPLDVFRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLP 613

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIA 633
                  G A+  L+    +  I                 L+  ++ G       S+   
Sbjct: 614 EAGPTAKGRALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKN 673

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEM-SR-GKGVR 688
               G   +K+   +++  V     GD + +     + + F  + D +     R   GVR
Sbjct: 674 VRASGLIAMKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVR 733

Query: 689 LQSYKDGGIS-------------------------------------DVICFKICEGLTW 711
                 G                                        D    +  +    
Sbjct: 734 GMKLAQGDEVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVT 793

Query: 712 IDSA----GRSYNRSENDL-----------------LGWLGKRGGVGSLVPKGFPRSGKF 750
           +D       R     E +                     +  RGG G       PR+G+ 
Sbjct: 794 VDDTALSPERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRA 853

Query: 751 LSS 753
           +++
Sbjct: 854 VAA 856



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 25/200 (12%)

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
             S  +  +   +GD +            +  + + +A  L   +       GE  Q+  
Sbjct: 727 RESSGVRGMKLAQGDEVISLSVLR----HVEATPEERAAYLRYASARRRSAAGEEDQIDA 782

Query: 595 D-LNHNQDIVTAF-----------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           + +  +   VT             + ++   LL V+  G        +   + R G+   
Sbjct: 783 EVMEADDSEVTVDDTALSPERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIA 842

Query: 643 KVSSEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDG 695
            ++   +    V  T     GD V +V +  +L+    DQ+    R   GV L    KD 
Sbjct: 843 NINLAPRNGRAVAATFPVRPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDE 902

Query: 696 GISDVICFKICEGLTWIDSA 715
            ++ V  F + E  +  D+ 
Sbjct: 903 VVTSV--FPVLETESVDDNG 920


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 284/768 (36%), Positives = 430/768 (55%), Gaps = 38/768 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN  +       +   ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MDDDNTLDLFNEPPSDSDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +A+L+L  +D+  VDF   Y+    EP V P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLGEIDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI +P++S  +L++++ GPDFP GG I+ S   I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAGAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---------- 290
            +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E I          
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQINPKIKLGKKA 300

Query: 291 --------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + L++ +RDES +D  VR+V  PK+  +D    + ++   + +E+  P
Sbjct: 301 LTPEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNM ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I +LNI
Sbjct: 361 LNMVMVGGDGRPRQKGLSEILHEWIAFRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNI 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR  D+PK  +++ F LT+ Q + IL +RLR L +LE+ +I+ EL  L  EK K
Sbjct: 421 DEVIRIIRESDEPKVALMAAFGLTDRQAEDILEIRLRQLARLEKIKIEKELAELREEKAK 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL S      Q+  EI       + +   G  R T  +  +       +A +  EP+
Sbjct: 481 LEELLGSESAMKRQLIKEIE------ADAKQYGDERRTLIQQEKRA---TFEARVVDEPV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++    L
Sbjct: 532 TVVVSQKGWVRALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + GK+
Sbjct: 592 PGGRGDGVPVTSLIELESGSHLMHYYAASAEQALLLASSNGFGFIAKVGDMVSRVKAGKS 651

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI 697
           F+ + +       + +    + VA +    +LL+F +D++  +   G+GV L    D   
Sbjct: 652 FMTIDAGAAPLAPMPMLPDAEQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMGL-DDNE 710

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGSLV 740
           + V    I +    +    R     E      +L   +GKR   G + 
Sbjct: 711 TLVQALAINKAGVMLIGTRRGGRVDEEKLAGAELAAHVGKRARKGRVP 758


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 405/842 (48%), Gaps = 117/842 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V   
Sbjct: 243 THTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR
Sbjct: 303 LKRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + FR++ I  +  +  G+ IA LNIDE+++II++                          
Sbjct: 362 TRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMI 421

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   +L+
Sbjct: 422 ELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     + +   + + K   +K       R T  E S  +     +++I KE + V ++ 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKP------RNTAIEQSVDE--IDAESLIPKEEMVVTVTM 533

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++          K       A   KE D         T   +L  S  GK Y L   
Sbjct: 534 NGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVY 593

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEE 628
            L  G     G ++  +  L+  + I +             +   ++  ++ GN      
Sbjct: 594 KLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-- 685
           S+       GK  + ++  +++         DHV +     K + F++  + +  RG+  
Sbjct: 654 SDFQYVPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQF-RGRTS 712

Query: 686 -GVRLQSYKDGGISDVICFKICEGLT---------------------------------- 710
            GVR      G    VI   +  G+                                   
Sbjct: 713 DGVRAIRLSAG--DQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPML 770

Query: 711 -------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +      + +  +     +  RGGVG +      R+G  +
Sbjct: 771 EEHTIEREQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVV 830

Query: 752 SS 753
           +S
Sbjct: 831 AS 832



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +  KL+  ++  I  + R                V  FK  +G   +  A       E D
Sbjct: 846 DKGKLIRIAVTDIRVVGRST------------QGVTLFKTEKGEKVVSVATVVDGSKEED 893

Query: 726 LLGWLG 731
                G
Sbjct: 894 EERPSG 899


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 216/759 (28%), Positives = 391/759 (51%), Gaps = 26/759 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++ E +  + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      
Sbjct: 2   MMAERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKP 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RY
Sbjct: 62  FRKAAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V F   +++  +EP V P+ FPNLL NG++GI+ G AT I
Sbjct: 122 TEARLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H + E+ +A L  ID P  +++ L+  + GPDFPTGGI ++ ++ I ++Y  GRG   
Sbjct: 182 PPHALGEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGI-IQGKDGIRKAYETGRGKII 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E+   G   I++TE+PY+V K+ L++KI EL + K++  + D+RDE+  +   
Sbjct: 241 IRAKATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLS 300

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  D + ++  ++  +D++  +  NM  +   R P++M L  +L  ++AHR++V
Sbjct: 301 IVIELKKDADAEAILNYLYKNTDLQVPYSFNMVAI-HERRPKLMSLPELLDAYIAHRKDV 359

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +  RS F ++  + R  I+ GL+ A   +DE+IA IR        K  +++ +  TE Q 
Sbjct: 360 VTNRSHFELKKANERKHIVDGLIKALSILDEVIATIRASSDKRDAKDRLIANYGFTEAQA 419

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E + L     ++ ++L   K+    I  E++ +K+ ++ 
Sbjct: 420 EAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADEKKLLAVIKKELKSMKKQYAD 479

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R T  E    +     +A+I  E + V ++  G+++     S    +   +  
Sbjct: 480 E------RRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTSYRSYSASNGQDIGM 533

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KE D L   L  +TTD +LL +  G     P   L     +  G+ I  LI +  + ++V
Sbjct: 534 KETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKDVGQHISSLIPIERDDELV 593

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD 659
                  +++  +L+ V+  G     E S+       +    + +  ++++  V    G 
Sbjct: 594 AVVPVSSFETNEQLVFVTKHGMVKRTELSQYQVQRYTRPLVAVNLKGDDQVIAVYATDGR 653

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAG 716
            +  +   +   L+F+ ++I  +  R  GV+    K+G     +C     E  + I    
Sbjct: 654 GLIWMATHDGYALLFAEEEISLVGVRAAGVKGIQLKEGDFVAAVCPICPEESGSLIVVTQ 713

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
           R   +           R   G ++ +   +S   + + +
Sbjct: 714 RGAVKKMALSEFEPTSRARRGVMIVREV-KSNPHRIVGA 751


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/751 (33%), Positives = 397/751 (52%), Gaps = 26/751 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++E YL YA+S I  RA+PD+RDG KPVHRRI+HAM+E        + K 
Sbjct: 29  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+IVGEVIG  HPHGD SVY++LVR+ Q F  R PLI GQGNFG+IDGD+ AAYRYTEAR
Sbjct: 89  AKIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +VAE +L+ ++++ V F   Y++   +P V P+ FPNLL NG+SGIAVGMAT+IP HN
Sbjct: 149 LEKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E  +A +A+I NPEI+I ++L  I GPDFPT   I+   E ++ +Y  G+G  R+R++
Sbjct: 209 LKETIDAVIAVIRNPEITIPEILRIIPGPDFPT-SGIIIGGEGLISAYTTGKGSIRIRSK 267

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   IVVTEIPYQV K  L+EKI +++  K+I  + +I D S      +   
Sbjct: 268 VEIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIH 327

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +  +++  ++ ++ ++  + + M  +   + P++  +  IL  + AHRR+V+ +R
Sbjct: 328 IKKDANAQVILNQLYKMTQLQVSYGITMLAILDNK-PKIFNIKEILTAYSAHRRDVIVKR 386

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +   ++R  IL+GL IA  NI+++I +IR   N  + K  ++ RFSL+E Q DAIL
Sbjct: 387 TQFDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVRFSLSEVQSDAIL 446

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL+ L  LE  +I  EL+ +      +  +L    +  + +  E++EV + +      
Sbjct: 447 EMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKPSRINDIVCTELQEVGDKYGTK--- 503

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             R+T     S    +   + +I  E + + I+   +I        +  K     +  L 
Sbjct: 504 --RKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLS 561

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K  D +KI   A T D I+  S  GK Y + A  L   S    G++++ +I+L  ++ +
Sbjct: 562 QKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYV 621

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
            + F +   D    LL+V+ +G    ++  E     + G   + +   +++  V  +   
Sbjct: 622 SSIFTFRGQDMDKDLLLVTKRGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVEAIEDK 681

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +  +    L    + I    R   GV      +     V   K  EG      +  
Sbjct: 682 DEVMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDTI-VGLSKYKEGEDIFVVSEE 740

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            Y +           RGG G    K   ++G
Sbjct: 741 GYGKRLGFEEFAAKGRGGKGMAYLKVTEKNG 771



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 524 ISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++ RG+I+ ++           + A+  +EGD L         D +++ S  G A  +  
Sbjct: 639 VTKRGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVEAIEDKDEVMIFSKKGLALRI-E 697

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
           GN++  +G   +    + L  +  IV    Y     + VVS +G    +   E  A  R 
Sbjct: 698 GNIIRAQGRTASGVTGMRLAEDDTIVGLSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRG 757

Query: 638 GKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
           GK    +   EK    V      + D V ++ +    +  +   I ++ R   GVR+   
Sbjct: 758 GKGMAYLKVTEKNGFSVGTGSVGSEDEVILITQQGMTIRINAFDISKLGRTAVGVRIVDL 817

Query: 693 KDGG 696
           KD  
Sbjct: 818 KDND 821


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/846 (29%), Positives = 405/846 (47%), Gaps = 117/846 (13%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            +   V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    
Sbjct: 6   QMSGGVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKP 65

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RY
Sbjct: 66  YKKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRY 125

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+I
Sbjct: 126 TEARLSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNI 185

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   
Sbjct: 186 PSHNLGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIV 244

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R   EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    
Sbjct: 245 VRGRTHTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVR 304

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V     R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV
Sbjct: 305 VAIELKRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEV 363

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ FR++ I  +  +  G+ IA LNIDE+++II++                      
Sbjct: 364 IVRRTRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADI 423

Query: 417 --------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                             + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +  
Sbjct: 424 RNMIELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYT 483

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L++     + +   + + K   +        R T  E S  +     +++I KE + V
Sbjct: 484 KILSTDSLLMDIVKQGLLDAKAKLATP------RNTAIEQSVDE--IDAESLIPKEEMVV 535

Query: 523 VISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            ++  G+++          K       A   KE D         T   +L  S  GK Y 
Sbjct: 536 TVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYK 595

Query: 575 LPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAF 624
           L    L  G     G ++  +  L+  + I +             +   ++  ++ GN  
Sbjct: 596 LKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIR 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
               S+       GK  + ++  +++         DHV +     K + F++  + +  R
Sbjct: 656 RNALSDFQYVPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQF-R 714

Query: 684 GK---GVRLQSYKDGGISDVICFKICEGLT------------------------------ 710
           G+   GVR      G    VI   +  G+                               
Sbjct: 715 GRTSDGVRAIRLSAG--DQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEV 772

Query: 711 -----------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                                   +      + +  +     +  RGGVG +      R+
Sbjct: 773 APMLEEHTIEREQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN 832

Query: 748 GKFLSS 753
           G  ++S
Sbjct: 833 GNVVAS 838



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 792 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 851

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +  KL+  ++  I  + R                V  FK  +G   +  A       E D
Sbjct: 852 DKGKLIRIAVTDIRVVGRST------------QGVTLFKTEKGEKVVSVATVVDGSKEED 899

Query: 726 LLGWLG 731
                G
Sbjct: 900 EERPSG 905


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/758 (32%), Positives = 405/758 (53%), Gaps = 30/758 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +K  +L   ++  ++ YA+S I  RA+PD RDG KPVHRRI++ MSE+G+ + A  KKS
Sbjct: 77  GLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKS 136

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG++DGD AAA RYTEAR
Sbjct: 137 ARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMRYTEAR 196

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  ++ G+ ++ VDF D Y+  + EPVV PS+FPNLL +G+SGIAVGMAT+IP HN
Sbjct: 197 MSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATNIPPHN 256

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A  AL  NPEI++ +L+EYI  PDFPTGGII  +++ ++E+Y  GRG   +R++
Sbjct: 257 LGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIF-NKKGLIEAYSTGRGSITIRSK 315

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             ++E+  G   I+VTEIPY+V+K+ ++EKI+ELI  K+I  + D RDES  D   ++  
Sbjct: 316 AHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIRIVID 375

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +S  P++++ ++F L+ +++ +  NM  L     P+++ L   L+ +L H+ EV+ RR
Sbjct: 376 IKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNE-PKLLNLKACLEVYLKHQIEVVSRR 434

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
             F ++    R  IL+GL I   NID +I II+      + +  +   F+L+E Q  AI+
Sbjct: 435 LKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQAFNLSEIQTKAIV 494

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +++L  L  L   ++  EL+ +         +L       N I  E++E+K  +  +   
Sbjct: 495 DMKLGRLTGLAIEKMNEELNEVHERIANYIKILGDHNLLINLIIEELQEIKNAYGDA--- 551

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
              R +         +   + +I K  I + ++N G+I+          +   V +S   
Sbjct: 552 ---RRSDINWDEL-SSIDNEDLIPKRDIVITLTNNGYIKRLDIEEYREQRRGGVGVSTTK 607

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLID-LNHNQD 601
             + D+++  L A+T   +L+ +   K Y +    +  G     G  I  +I  +  N+ 
Sbjct: 608 TYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPVGTKQSKGIPIVNVIPSIQKNEK 667

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK--MKLVVKV 656
           ++       Y     LL  + KG           +  R GK    +  ++   +  ++  
Sbjct: 668 VIKILPINEYKQNEYLLTATKKGIVKKTPTILFESINRNGKIAFAIRDDDDKLIDALIVK 727

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D + +   N K+  F  ++I  M R   GV+     D   + V      +G       
Sbjct: 728 DEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVSVSSSNQGKYIFSLG 787

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              Y +     +    +RG  G        +SGK + +
Sbjct: 788 KEGYGKLTLAAMFRKTRRGASGVYSLNE-EKSGKLIYA 824



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/464 (11%), Positives = 157/464 (33%), Gaps = 63/464 (13%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +   A  +  L+    E+ + V  ++       +    +   F LS+++T+       + 
Sbjct: 442 DRARAHILEGLKICI-ENIDAVIKIIKESKTDQEAQSKLSQAFNLSEIQTK------AIV 494

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE 402
             ++ ++                +   + +  +  +  R+     +L     +  L I+E
Sbjct: 495 DMKLGRLTG--------------LAIEKMNEELNEVHERIANYIKILGDHNLLINLIIEE 540

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR--------KLEEYQIKSELD-- 452
           +  I       +   ++   L+    + ++  R   +         +L+  + + +    
Sbjct: 541 LQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYIKRLDIEEYREQRRGG 600

Query: 453 -----NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT---------T 498
                    + + I  +L +       I  ++ +V  I      +G +++          
Sbjct: 601 VGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPVGTKQSKGIPIVNVIP 660

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDSL 551
             + +      L     ++    +  + +G ++   +   +    + K       + D L
Sbjct: 661 SIQKNEKVIKILPINEYKQNEYLLTATKKGIVKKTPTILFESINRNGKIAFAIRDDDDKL 720

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             AL     D I + +++ K     +  + S       ++ +   +   ++V+    +  
Sbjct: 721 IDALIVKDEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVSVSSSNQG 780

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSE--EKMKLVVKVTG-DHVAVVGEN 667
             +  +  +G   +   + +   TR+G + +  ++ E   K+     V G + + V+  +
Sbjct: 781 KYIFSLGKEGYGKLT-LAAMFRKTRRGASGVYSLNEEKSGKLIYAATVHGVEDLIVLTSD 839

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710
              + FS+  +    R  KGV+L + K    + V   KI +   
Sbjct: 840 GVAIRFSLKDVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDL 883


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 277/755 (36%), Positives = 422/755 (55%), Gaps = 34/755 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A 
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RY
Sbjct: 69  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT I
Sbjct: 129 TEARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGIAVGMATEI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +
Sbjct: 189 PPHNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIYEGGRGSLK 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAK 293
           VRARW +EE+ RG W +VVTE+P      +++E+I E                   + A 
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQDQQQLKAT 308

Query: 294 RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES +D  VR+V  PK++++     + ++   + +E+  P+N+ ++     
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINLVMIGTDGR 368

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+   L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I IIR  D
Sbjct: 369 PRQKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PKP ++  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S    
Sbjct: 429 EPKPALIEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMM 488

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             +I  EI    + +S        R T  +  R   A   +  +  EP+TVV+S +GW+R
Sbjct: 489 RRRIIKEIETDAKQYSPEDK--DPRRTLIQEERRAAA---EVRVIDEPVTVVMSQKGWVR 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G  I 
Sbjct: 544 TRQGHGHDAQQFTFKAGDALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGDGVPIT 603

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            LI+L     +   F   +  ++L+ ++ GN F  +  ++I+  + GK+FL +   +   
Sbjct: 604 TLIELQSGSQVAHTFAGSAEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGDTPL 663

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
               +  +  HVA +  N +LL+ ++D++  +S  G+GV L   +      +    +   
Sbjct: 664 APAPIGDEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILIELEP-KEKLLQAVGVGAP 722

Query: 709 LTWIDSAGRSYNRSEND-----LLGWLGKRGGVGS 738
              +  AGR    +        L  ++GKR   G 
Sbjct: 723 GLMLSGAGRGGKPTSQKLAGVALQAYVGKRARKGK 757


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/842 (29%), Positives = 404/842 (47%), Gaps = 117/842 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V   
Sbjct: 243 THTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR
Sbjct: 303 LKRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + FR++ I  +  +  G+ IA LNIDE+++II++                          
Sbjct: 362 TRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMI 421

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   +L+
Sbjct: 422 ELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     + +   + + K   +        R T  E S  +     +++I KE + V ++ 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLATP------RNTAIEQSVDE--IDAESLIPKEEMVVTVTM 533

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++          K       A   KE D         T   +L  S  GK Y L   
Sbjct: 534 NGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVY 593

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEE 628
            L  G     G ++  +  L+  + I +             +   ++  ++ GN      
Sbjct: 594 KLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-- 685
           S+       GK  + ++  +++         DHV +     K + F++  + +  RG+  
Sbjct: 654 SDFQYVPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQF-RGRTS 712

Query: 686 -GVRLQSYKDGGISDVICFKICEGLT---------------------------------- 710
            GVR      G    VI   +  G+                                   
Sbjct: 713 DGVRAIRLSAG--DQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPML 770

Query: 711 -------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +      + +  +     +  RGGVG +      R+G  +
Sbjct: 771 EEHTIEREQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVV 830

Query: 752 SS 753
           +S
Sbjct: 831 AS 832



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +  KL+  ++  I  + R                V  FK  +G   +  A       E D
Sbjct: 846 DKGKLIRIAVTDIRVVGRST------------QGVTLFKTEKGEKVVSVATVVDGSKEED 893

Query: 726 LLGWLG 731
                G
Sbjct: 894 EERPSG 899


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 278/728 (38%), Positives = 414/728 (56%), Gaps = 33/728 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +DE  V+F   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+ALI +P +   +L+  + GPDFP GG I+ S   I  +Y  GRG  +VRARW +E
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W +VVTE+P      +++E+I EL                       + LL+ +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK R++D    + S+   + +E+   LN+ ++     P    L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  R+  + RR   R+  ++ R+ IL+G +I +LNIDE+I IIR  D+PK  ++S
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALIS 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL +       +  EI
Sbjct: 440 AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDERRTLIQQEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            ++  FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  F+ +  ++++  + GK+F+ +         + V  D
Sbjct: 611 SHLLHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +  D   + V    I      +   G
Sbjct: 671 ASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTG 729

Query: 717 RSYNRSEN 724
           R     E 
Sbjct: 730 RGGKAQEE 737


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/745 (33%), Positives = 421/745 (56%), Gaps = 35/745 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RA+PD+RDG KPV RRI+++M EMGL     ++KSARIVG
Sbjct: 6   EIAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD +VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+T++A
Sbjct: 66  DVLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D+D VDF   ++    EP V P+ FPNLLANG+SGIAVGMAT+IP HN++EIC
Sbjct: 126 EEMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREIC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  I NP++++ +L++++ GPDFPTGGIIV   E I+++Y  GRG   +R +   E+
Sbjct: 186 DAIVEYIRNPDVTVRELMKHVKGPDFPTGGIIV-GVEGIIKAYETGRGRIILRGKVEFED 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ E+PY V+KS ++EKIA L+   ++  ++ +RDES  +   V+      +
Sbjct: 245 -----NAIIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGV 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D +L+++ +++ + ++  + + +  L   + P+++ L  ++ E++ HRREV+ RR+++ +
Sbjct: 300 DKNLVLKKLYLYTPLQITYSIMLLALVNTQ-PKILTLKDLIAEYVNHRREVVRRRTAYEL 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R+ +L+G  I   N+DE I++IR+     + K  +++RFSL+E Q DA+L +RL+
Sbjct: 359 EKAEERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINRFSLSEKQADAVLQMRLQ 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   I  E + L  + +++ S+L+S ++    I  E+ E+K+ +        RRT
Sbjct: 419 KLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDEIIIKELEEIKKNYGD-----DRRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGD 549
              E         +   I+ E   ++I+  G+         R  +   V  S +  ++GD
Sbjct: 474 KIVEKYE---EITEVDTIKDEENVLIITKDGYAKRLDESDFRVQRRGGVGTSGISLRDGD 530

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
                +   + DRILL + DGKA+++ A  +      G+ + L   L    +IV    + 
Sbjct: 531 YAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRFLRIEDEIVGIVPF- 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
               +++++  G    V  +E     R G     ++S E +  V K+ G  V +  EN +
Sbjct: 590 GKGSVVILTESGYIKKVNIAEFENAKRSGI----LASPESVAFVKKLDGKEVIIATENGR 645

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L+ F  +++PE  R  +GV+  S     I+      +      +      Y +       
Sbjct: 646 LVRFKAEEVPEYKRNARGVKAVSLDGDKIA---WMDVGSEDLILTLTENGYGKMTKTEEF 702

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
            L  RG  G    K   ++GK + +
Sbjct: 703 RLTGRGAKGVTAHKVNEKTGKLVFA 727


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/761 (32%), Positives = 398/761 (52%), Gaps = 34/761 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA---VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           E R+       L          VDF   ++    EP + P++ P+LL NG+SGIAVGMAT
Sbjct: 198 ECRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG 
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGR 316

Query: 250 FRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
             +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES  
Sbjct: 317 VVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDR 376

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R  DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ ++  
Sbjct: 377 SGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFIDF 435

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R  V+ RR+ F++     R  I++G++I   N+D +I IIR   N    +  ++  F L+
Sbjct: 436 RCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLS 495

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K 
Sbjct: 496 DKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKN 555

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            F+        R +F E S          +I  E + +++S +G+++ +K          
Sbjct: 556 KFATP------RRSFIEDSA-STEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRG 608

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
           ++  S    +  D+    +   T D +L  S  G  Y+  A  +        G  +  L+
Sbjct: 609 TIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLL 668

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L+  + I +      +     L++++  G    V  +   A    G   ++++  +++K
Sbjct: 669 SLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELK 728

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V +   D  VA+  +N  +++ + +++  + R  +GV     K+G     +        
Sbjct: 729 WVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSH 788

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              ++  R  + S   LL       G+G  VP    R G F
Sbjct: 789 NMPETYSRVRDLSPPWLLFIADN--GIGKRVPLNAFRQGNF 827



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++   V+++  G+I+ +  ++        + ++    GD LK        D + L S +G
Sbjct: 687 EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNG 746

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----------------L 614
               +   N L   G      L + L     + +  +  +T                  L
Sbjct: 747 MVI-VNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWL 805

Query: 615 LVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVAV 663
           L ++  G    V  +        R G    K+  +  +  V  V         + + V +
Sbjct: 806 LFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVL 865

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           V ++  +    +  I   SR  +GV L   +  G
Sbjct: 866 VSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 899


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/764 (34%), Positives = 412/764 (53%), Gaps = 45/764 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT   E+   + L    E  YL YA+S +K RA+PD+ DG KPV RRI+ AM EMGL  
Sbjct: 3   ENTASAEHSDILLLAPYAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGLAA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            +   KSAR+VGE++GK HPHGD S YD++VR+AQ F  RYPLI G GNFG+ DGD AAA
Sbjct: 63  NSKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +AEL+L  + +  VDF   Y+    EPV  P++ P +L NG SGIAVGMA
Sbjct: 123 MRYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+  AA+AL+  P ++  +L+E+   PDF  GG I+   + +++ Y  G+G
Sbjct: 183 TEIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETGKG 242

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------I 290
             RVRAR+ +E++ RG W +V+TE+P      +++ +I E                    
Sbjct: 243 SIRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQLNT 302

Query: 291 IAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
               + L++ +RDES     VR+V  PK+  ++PD  + ++   + +E   P N+ ++ +
Sbjct: 303 KKLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMIGL 362

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
              P    L  IL+EWL  R   + RR   R++ + +R+ IL G + A+L+IDE+I +IR
Sbjct: 363 DNRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRVIR 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             D+PKP +++ F L+E Q + IL +RLR L +LE ++++ EL +L  E+  + +LL   
Sbjct: 423 EADEPKPELMAAFGLSEIQAEDILEIRLRQLARLEGFKLEQELADLREEEGYLKNLLADE 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             +   I  E++   + F        RRT   E  RA            EP+T+++S +G
Sbjct: 483 GAKKKLIIKEMQADAKQFGDP-----RRTLVAEAERAA----LTHTTADEPVTLILSRQG 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           WIRS   H +DLSA  FKEGD L+  L   T D +++L T G++YT+    +  GRG G 
Sbjct: 534 WIRSRAGHGLDLSATAFKEGDELQQTLETRTVDPVVVLDTLGRSYTIDPAEIPGGRGDGV 593

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  L++L     ++           L+  S G  FI +  +++   + GK  +K+ + E
Sbjct: 594 PLASLLELQPGASVLAMLAGQPQEHYLLAGSGGYGFIAKLGDLVGRVKAGKEVVKLEAGE 653

Query: 649 KMKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
            + +   V           + +    + LL F I ++  M++G+G++L S +      + 
Sbjct: 654 TLLMPQPVHQSALINPDCRLVLASAEKHLLAFPIGELKVMAKGRGLQLMSLRGNDTLQLT 713

Query: 702 CFKICEGLTWIDSAGRSY-----NRSENDLLGWLGKRGGVGSLV 740
                    W+ S G+            D+    GKRG  G ++
Sbjct: 714 ALVSTPDF-WVCSRGKRGAAHRERLRVQDIE---GKRGRKGRML 753


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/761 (32%), Positives = 398/761 (52%), Gaps = 34/761 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA---VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           E R+       L          VDF   ++    EP + P++ P+LL NG+SGIAVGMAT
Sbjct: 198 ECRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG 
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGR 316

Query: 250 FRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
             +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES  
Sbjct: 317 VVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDR 376

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               V+    R  DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ ++  
Sbjct: 377 SGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFIDF 435

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           R  V+ RR+ F++     R  I++G++I   N+D +I IIR   N    +  ++  F L+
Sbjct: 436 RCSVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLS 495

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +A+L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K 
Sbjct: 496 DKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKN 555

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SH 536
            F+        R +F E S          +I  E + +++S +G+++ +K          
Sbjct: 556 KFATP------RRSFIEDSA-STEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRG 608

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
           ++  S    +  D+    +   T D +L  S  G  Y+  A  +        G  +  L+
Sbjct: 609 TIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLL 668

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            L+  + I +      +     L++++  G    V  +   A    G   ++++  +++K
Sbjct: 669 SLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELK 728

Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V +   D  VA+  +N  +++ + +++  + R  +GV     K+G     +        
Sbjct: 729 WVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSH 788

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              ++  R  + S   LL       G+G  VP    R G F
Sbjct: 789 NMPETYSRVRDLSPPWLLFIADN--GIGKRVPLNAFRQGNF 827



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++   V+++  G+I+ +  ++        + ++    GD LK        D + L S +G
Sbjct: 687 EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNG 746

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----------------L 614
               +   N L   G      L + L     + +  +  +T                  L
Sbjct: 747 MVI-VNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWL 805

Query: 615 LVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVAV 663
           L ++  G    V  +        R G    K+  +  +  V  V         + + V +
Sbjct: 806 LFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVL 865

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           V ++  +    +  I   SR  +GV L   +  G
Sbjct: 866 VSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 899


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 270/774 (34%), Positives = 424/774 (54%), Gaps = 43/774 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        +   E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL   A   KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+  +A L+L  +D    DF   Y+   +EP + P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IP+HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
            +Y +GRG  +VRARW VEE+ RG W +V+ E+P+      ++E+I EL           
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 290 -------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                  + A  + LL+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I  IRN D P+P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  +
Sbjct: 421 DEVIETIRNSDDPRPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAE 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL   K    +I  EI       + +   G  R T  +  +   A   +  +  E +
Sbjct: 481 LQKLLADEKAMTRRIISEIE------ADAKQFGDDRRTLIQAEQRAVA---EVKVVDEAV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV++S +GW+R  K H + LSAL FK GD+L       + D +++L +DG+AY++   +L
Sbjct: 532 TVIVSQKGWLRVQKGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSMDVADL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G+ +   I+L      +       T  LL+ +++G  F+   S+ ++  R GKT
Sbjct: 592 PGGRGDGQPVTSFIELAPGTQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKT 651

Query: 641 FLKVSSEEKMKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           F+ +   + ++  + +  D        +A +  + +LL++   ++  ++R G+G+ L + 
Sbjct: 652 FVTLEDGDTLQRPLVLDTDADGSPVGRLATLSADGRLLLYPAAEVKTLARGGRGITLMAL 711

Query: 693 KD-GGISDVICFKICEGLTWIDSAGRSYNRSENDL-----LGWLGKRGGVGSLV 740
                +  V           +   GR        L       ++GKR   G  +
Sbjct: 712 DAKETLQSVAQLAAERDALLVSGKGRGGTERSATLSAAQQTAYVGKRARRGRKL 765


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 238/744 (31%), Positives = 379/744 (50%), Gaps = 59/744 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + L   ++  V++   +   YLAYA+S I  RA+PD+RDG KPVHRRI+++M E G   
Sbjct: 6   DDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTH 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSAR VG+V+GK HPHGD S+YD++VR+AQ +  R  LI GQGNFG++DGDS AA
Sbjct: 66  DKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+ + A  +L  +D D VDF+  Y+E + EP + P+ FPNLL NG SGIAVGMA
Sbjct: 126 MRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGASGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN  EI +A LA+I+ P+++++ LL+Y+ GPDFPTGG I+  R  I  ++  GRG
Sbjct: 186 TNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTIL-GRAGIRSAFETGRG 244

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE+ +    I+VTEIPYQV K+ L E+IA+L+  K++  + DIRDES   
Sbjct: 245 SVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIRDESDRS 304

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R   P++++  ++  + ++T F +NM  L  G  P++M L  +L+ ++  R
Sbjct: 305 GMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLAL-DGGQPRLMGLKDVLEAFIRFR 363

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------- 409
            +V+ RR+ F +     R  +L GL+IA  NID +IA+IR                    
Sbjct: 364 EDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMARGWDAA 423

Query: 410 ---------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                     D+   ++  +  LTE Q   IL LRL+ L  LE  +I+ EL  +      
Sbjct: 424 DVAPLLELIHDEGNVIVDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEVAVRIND 483

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  ++ S  ++   +  E+  ++   +             +++        +++IE   +
Sbjct: 484 LLEIIASRPRRMEVMRNELVSIRAELATPRA--------TDIADYAGDQTDESLIEPGQM 535

Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            V I+  G+I+                 +A   +  D +  + +AHT   +L  S+ GKA
Sbjct: 536 VVTITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKA 595

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y      L        G A+  L+    +  I                 L+  ++ G+  
Sbjct: 596 YREKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVR 655

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEM 681
               S+       G   +K+  ++++  V     G  V +   N + + F I    +   
Sbjct: 656 RNRLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVF 715

Query: 682 -SRG-KGVRLQSYKDGGISDVICF 703
             RG  GVR     +G   + +C 
Sbjct: 716 AGRGSSGVRGIRLAEGDSVNSLCV 739



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKV----TGDHVAVVGEN 667
           LL+VS+ G        +   + R G+    +  S+ ++   VV       G  V +V + 
Sbjct: 805 LLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTFSANKRGNAVVATLPVLEGTDVMLVTDA 864

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            +L+   I Q+  MSR   GV L    D
Sbjct: 865 GRLIRLPIGQVRIMSRQASGVTLFRLND 892


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 416/751 (55%), Gaps = 40/751 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMGL     ++KSARIVG
Sbjct: 6   DISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD +VYD+LVR+AQ FV RYPL+ GQGNFG+IDGDS AA RYTEAR+T++A
Sbjct: 66  EVLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L  + ++ VDF   ++    EPVV PSK PNLL NG+SGIAVGMAT++P HN+ E+C
Sbjct: 126 EEMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           E  +A I NPEIS+E+L++Y+ GPDFPTGG+IV   + I E+Y  GRG   VR +  VE 
Sbjct: 186 EGIIAYIQNPEISVEELMKYVKGPDFPTGGVIV-GVDGIKEAYLTGRGKITVRGKVEVE- 243

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ E+PY V K++L+E IAEL    RI  +  IRDES  +   V+       
Sbjct: 244 ----KNAIIIREVPYMVNKAKLVESIAELAKD-RIDEIRTIRDESDREGIRVVIELKSGS 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +P+ +++ ++  S+++T F +    L     P+++ L  ++  ++ HRRE++ RR+++ +
Sbjct: 299 NPETVIKKLYAYSNLQTTFGIINLALVDNE-PRILNLKELIALFVDHRREIIRRRTTYDL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437
           +    R+ I++GL +   +ID  I +I++     + K  ++  +SL+E Q DA+L +RL+
Sbjct: 358 EKAQERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIETYSLSEKQADAVLQMRLQ 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   +  E ++L  +  + +S+L S ++    IA E+RE++E +        RRT
Sbjct: 418 KLTAMEIDALLKEYESLKEKIAEYESILASPEKIDAIIADEVREIREKYGDE-----RRT 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGD 549
              E+           +IE+E   V+I+  G+         R      V +       GD
Sbjct: 473 ---EIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGD 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF- 606
            + +    ++TDR+L+ +  G+A+ + A  +        G  ++ LI L + + +V+A  
Sbjct: 530 EIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSALG 589

Query: 607 VYDSTCKL-LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           V D   K+ +++S  G    V   E     R G       S  +++ V  + GD + +  
Sbjct: 590 VKDFNGKIAVILSPDGYIKKVPLIEFENAKRAGVKA----SAGEIQQVELLEGDSIFIAT 645

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            N  ++      +PE  R  KGV     +DG    +      EG   +    R Y +  +
Sbjct: 646 ANGNVVRLRETDVPEYGRNAKGVIAVRLRDG--DRIAWMSASEGEYLLMLTERGYGKRCD 703

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGK--FLSS 753
                   RG +G +  +   ++GK  F+S+
Sbjct: 704 VNEFRFIGRGSMGMIGYRISEKTGKLAFISA 734



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 14/189 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
              I V++S  G+I+ +      +      K        +     D I + + +G    L
Sbjct: 594 NGKIAVILSPDGYIKKVPLIEFENAKRAGVKASAGEIQQVELLEGDSIFIATANGNVVRL 653

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
              ++     + + + + + L     I           LL+++ +G     + +E     
Sbjct: 654 RETDVPEYGRNAKGV-IAVRLRDGDRIAW-MSASEGEYLLMLTERGYGKRCDVNEFRFIG 711

Query: 636 RKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR--------G 684
           R     +     EK   +  +    G+ V ++ E+   +      IP   R         
Sbjct: 712 RGSMGMIGYRISEKTGKLAFISACNGEEVFIMSEDGYCIRIDSSTIPVQGRYSSGVVVAR 771

Query: 685 KGVRLQSYK 693
           KGV+  + K
Sbjct: 772 KGVKRVALK 780


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 390/744 (52%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 SIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I++P+ +++ L++ I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 VESVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++T +  NM  +     P +M L  IL  +++H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQTTYNFNMVAIHNR-RPMLMSLTAILDAYISHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  I++GL+ A   +DE+IA+IR        K  ++S+F+ TE Q +AI++L
Sbjct: 366 FELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNVMSKFTFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     
Sbjct: 426 QLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS----- 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D L
Sbjct: 481 -RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+ +  +I ++ ++ IV A    
Sbjct: 540 IHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDMGQHVTNIITIDRDETIVKAIPVK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
            +D +  LL ++  G     E +   A    K    L +  ++++  V     G  + + 
Sbjct: 600 EFDPSSYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELIDVHVTDGGSQLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + KDG    V    + E  + +    R   +  
Sbjct: 660 TRLGYGLWFGEDEVNVVGARAAGVKGINVKDGDTV-VSGQILHETDSLVLVTQRGAIKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           N        R   G ++ +   ++
Sbjct: 719 NLSEFEKTSRAKRGVIMLRELKKN 742


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 268/741 (36%), Positives = 434/741 (58%), Gaps = 15/741 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   S+    E  YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   A  KKSA
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEAR 135
           R VG+V+GK HPHGD + Y+++V +AQPF  RYPLI+GQGN+G   D  S AA RYTEA 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A+++L  +++  VD++D ++   SEPV  P++ PN+L NGT+GIAVGMAT IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + L+ NPE+S ++L++ +  PD PT   I+  +  ++  Y  G+G +++RA 
Sbjct: 185 LHEVVKVCIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVL 313
           +      + +  +++  +PYQV  ++++E+IA+L++ K++P + +IRDES      RIV+
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K   L+ D +M  +F  +D+ET + +NMN++ +   P+V  L  IL EWL+ R+ V+ 
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR  +R+  I+ R+ IL GLLIAYLNIDEII IIR  + PK  +++RF LT+ Q +AIL+
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILD 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LR L KLEE ++ +E D L AE+  I   LN+ +     +  E+       + +   G
Sbjct: 423 IKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDELT------ADAKTHG 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
             R +         +     +I  EPIT ++S  GWIR+ K H  D + ++++ GD+   
Sbjct: 477 DARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLT 536

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC- 612
                +T+R++L+   G++Y L + +L S R  G+ I  L++L     I     Y+ T  
Sbjct: 537 HALGKSTERLILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNG 596

Query: 613 --KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG-ENRK 669
              +L+ SS G  FI + + +    + GK+ + ++    + +VV    D +  V   N  
Sbjct: 597 SPNVLMASSLGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGN 656

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           LLIF+ D++P++++GKG +L + K G     I          I +  R+   + ND+  +
Sbjct: 657 LLIFASDELPKLAKGKGNKLANLKAGETITAITALSDTDALVITAGKRTLTLNPNDIANY 716

Query: 730 LGKRGGVGSLVPKGFPRSGKF 750
           +  R   G+ +PKGF +    
Sbjct: 717 IAHRANRGNPLPKGFGKVSNM 737


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/743 (35%), Positives = 406/743 (54%), Gaps = 27/743 (3%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + +    E  YL YA+S ++ R +PD+ DG KPV RR+++AM++MGL   A   KSAR+
Sbjct: 56  RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 175

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A+L+L  +D+  VDF+  Y+    EP + P++ P LL NG SGIAVGMAT IPSHN++E
Sbjct: 176 FADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLRE 235

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A   LI  P+ +   ++  + GPD+P G  I+     I + Y  GRG  RVRARW +
Sbjct: 236 VADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSL 295

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLED 300
           E++ RG W I VTE+P+ V   +++E+I EL                  + A  + +L+ 
Sbjct: 296 EQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDS 355

Query: 301 IRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RD+S     VRIV  P +    P+ LM  +   + +E    +N+  + +   PQ   + 
Sbjct: 356 VRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIV 415

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             L EW+  R   + RR+  R+  ++RR+ IL G +IA+LNID++I +IR  D+PK  ++
Sbjct: 416 PALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDLI 475

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F L+E Q + IL +RLR L +LE  +I+ EL  L  E+  + SLL       NQI  E
Sbjct: 476 ATFHLSEVQAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKE 535

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I   K+ F      G  R T  E +    +         +P+T+++S  GW+R+   H +
Sbjct: 536 IEADKQKF------GDDRRTLIESAEKVTSGAV-VPTADDPVTIIVSRSGWLRARSGHGI 588

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           D+S L FK GD L  ++   T+  + +  T+G+ Y + +  + +GRG G  +  LI+L  
Sbjct: 589 DISTLTFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQG 648

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
              +    V D T   L+ SS G  ++   ++++   + GK F  +   E M    K+ G
Sbjct: 649 GGRLTHVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG 708

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           D V+ V    +L++F + ++  M +GKGV+L   +       +            ++G+ 
Sbjct: 709 DTVSAVCSGGRLVLFPLSEVKVMPKGKGVKLMELEARETLVAVAIGDGASCIVSTTSGKP 768

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
              +   L  +   R   G  +P
Sbjct: 769 IALTGTALDKYRLHRARKGCQLP 791


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 285/768 (37%), Positives = 429/768 (55%), Gaps = 41/768 (5%)

Query: 1   MGVDNISN--SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  DN  +  +     E    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+
Sbjct: 1   MDDDNTLDLFTEPPPPEG-DFLTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRIL 59

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+E+GL   A   KSAR+VG+VIGK HPHGDQS YD+LVRLAQ F  RYPLI GQGNF
Sbjct: 60  YAMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNF 119

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  + EP   P++ P LL N
Sbjct: 120 GSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEQEPRQLPARLPFLLLN 179

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT IPSHN++E+  A +A+I NP+I+   L++++ GPDFP GG I+ S   
Sbjct: 180 GASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHADLMQHMPGPDFPGGGQIISSEAE 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---------- 288
           I  +Y  GRG  +VRARW +E++ RG W +V+TE+P      +++E+I E          
Sbjct: 240 IAAAYESGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGK 299

Query: 289 --------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         + LL+ +RDES +D  VR+V  PK+  +D    + ++   + +E+ 
Sbjct: 300 KALTPEQLQAKQTMLSLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESN 359

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             LN+ ++     P+   L  IL EW+A R   + RR+  R+  +D R+ IL+G +I YL
Sbjct: 360 ASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYL 419

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++ F L++ Q D IL +RLR L +LE+ +I+ EL +L  EK
Sbjct: 420 NIDEVIRIIRESDEPKVALMAAFGLSDRQADDILEIRLRQLARLEKIKIEKELADLRDEK 479

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K++ LL S       +  EI       + +   G  R T  +  +       +A +  E
Sbjct: 480 AKLEELLASESAMKRLLIKEIE------ADAKQYGDERRTLIQQEKRA---TYEARVIDE 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+TVV+S +GW+R+LK H +D +   FK GD L  A    T D ++   ++G+ Y++   
Sbjct: 531 PVTVVVSQKGWVRALKGHGLDTAGFTFKAGDGLYAAFPCRTPDTLIAWGSNGRVYSVAVA 590

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +L  GRG G  +  LI+L     ++  +   +   LL+ SS G  FI +  ++++  + G
Sbjct: 591 SLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQALLLASSNGFGFIAKVGDMVSRVKAG 650

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           K+F+ + +       + +  D   VA +    +LL+F ID++  +   G+GV L +  D 
Sbjct: 651 KSFMTIDAGAAPLAPMPMLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMAL-DD 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
             + V    I      +  A R     E  L G      +GKR   G 
Sbjct: 710 KETLVQALAINGAGVMLIGARRGGRLDEEKLSGAALAAHVGKRARKGR 757


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 218/750 (29%), Positives = 390/750 (52%), Gaps = 24/750 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 SIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I++P+ +++ L++ I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 VEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++T +  NM  +     P +M L  IL  +++H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQTTYNFNMVAIHNR-RPMLMSLTAILDAYISHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  I++GL+ A   +DE+IA+IR        K  ++S+FS TE Q +AI++L
Sbjct: 366 FELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     
Sbjct: 426 QLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS----- 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D L
Sbjct: 481 -RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+ +  +  ++ ++ IV A    
Sbjct: 540 IHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKAIPVK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            ++    LL ++  G     E +   A    K    L +  ++++  V    G   + + 
Sbjct: 600 EFNPASYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELVDVHVTDGGCQLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + KDG    V    + E  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKDGDTV-VSGQILHETDSLVLVTQRGAIKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
           N        R   G ++ +   ++  + + 
Sbjct: 719 NLSEFEKTSRAKRGVIMLRELKKNPHRVVG 748


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 248/783 (31%), Positives = 404/783 (51%), Gaps = 67/783 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM +MG D+  ++KKSARIVG VIGK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DGDSAAA RYTE R+++++  IL+
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++D V++   Y++ +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI  A LA
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC-VEEVGRG 264
            +DN  I ++ L++++ GPDFPT GI +   + I ++Y  GRG   +RA    + +    
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGI-IYGIKGIEDAYSTGRGKIYIRANSKIISDNKTK 255

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I++ EIPYQV K RLIEKIA+L+  K+I  +  +RDES  D   ++    R    ++
Sbjct: 256 RESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEI 315

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++ ++ ++  F +NM  L  G+ P+ + L  IL  +L HRR ++ R+++F ++ I 
Sbjct: 316 VLNNLYSMTQLQISFGINMVALCYGQ-PKTLSLKKILSYFLYHRRVIITRKTNFELKKIY 374

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------------------- 417
            R+ +L+   IA  NID +I++I+N +  +                              
Sbjct: 375 YRLNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFS 434

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                       +++ +++ Q  AIL+LRL  L KLE  ++  E  +L+ +  K++ +L 
Sbjct: 435 KKQKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILK 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              +  N I  E+  +K+ ++       RRT      +       + +I ++ + V +S+
Sbjct: 495 YPDELTNSIKKELLILKQEYNDK-----RRTKII---KKPVNINIEDLINQKDVIVTLSH 546

Query: 527 RGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           +G+++                 SA   KE D ++  L A+T D ILL S+ G+ Y +   
Sbjct: 547 QGYVKYQPLKDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIF 606

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633
            L   S    G+ I  L+ L   + I     +   +    + + ++ G        E   
Sbjct: 607 QLPENSRGSIGKPIINLLPLESKEYITAILPFRKYEKKLYVFMATASGIVKKTALHEFSR 666

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHV-AVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
               G   + ++S +K+       G     +  E  K++ F  +Q+  M R   GV+  S
Sbjct: 667 PRSSGIIAVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNMGRAASGVKGIS 726

Query: 692 YKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              G    V+   I +  +  +      Y +           R   G +  K   R+GK 
Sbjct: 727 LIPG--DRVVSLIIPKNNSPILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRNGKV 784

Query: 751 LSS 753
           + +
Sbjct: 785 VGA 787



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 16/205 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E      A L     EK+    + +  G ++    H         + A++   GD L  A
Sbjct: 627 ESKEYITAILPFRKYEKKLYVFMATASGIVKKTALHEFSRPRSSGIIAVNLNSGDKLIGA 686

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                +   +L S  GK    P   +   R  G A   +  I L     +V+  +  +  
Sbjct: 687 DLTDGSQEAMLFSEYGKVVRFPENQV---RNMGRAASGVKGISLIPGDRVVSLIIPKNNS 743

Query: 613 KLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENR 668
            +L V+  G      +SE    +R   G   +KV     K+   V+V   D + ++ ++ 
Sbjct: 744 PILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRNGKVVGAVQVNDYDQIMIITDSG 803

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSY 692
            L+   + ++  + R   GVRL   
Sbjct: 804 TLVRIRVSEVSIVGRNTHGVRLIRI 828


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 382/748 (51%), Gaps = 22/748 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGGI ++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGI-IQGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+      ++
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D + ++  ++  SD++  +  NM  +     P +M L  IL  ++AH++EV+ 
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNR-RPTLMTLTTILDAYIAHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
            RS++ ++    R  I+ GL+ A   +DE+IA IR+ +     K  ++ ++  TE Q +A
Sbjct: 362 NRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMEKYDFTEAQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E + L     +++ +L + K+    I   ++++K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITQLRDEANELDVRIAELEDILGNEKKLLKVITNSLKKLKKTYADD- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R +  E    +     + MI  E + V ++  G+I+     S   S       K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L     +  G+ I  +I ++ ++ I  A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +D T  LL  +  G     +  +  A    K    L +  ++++  V   TG   
Sbjct: 596 IPIKEFDETSYLLFFTKGGMVKKTKLLQYKAQRYSKPLVALNLKGDDELVDVHVTTGQQE 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N   L F  +++  +  R  GV+  + KDG           +    + +  R  
Sbjct: 656 LFIATKNGYGLWFDEEEVSVVGPRAAGVKGINLKDGDEVVSGQIINPKNDVLVLTTQRGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  N        R   G L+ +   ++
Sbjct: 716 VKRMNLSEFDKTSRAKRGVLMLRELKKN 743


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 226/743 (30%), Positives = 382/743 (51%), Gaps = 23/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFQDLPLEEVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +A  +L  +D++ V F   +++  +EPVV P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLAPIASELLHDIDKETVKFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI + A+  ++NP+ ++E L+  I GPDFPTGGI V+  + I ++Y  G+G   VR 
Sbjct: 185 HLGEIIDGAIMRMENPDCTVEDLMTVIKGPDFPTGGI-VQGIDGIKKAYETGKGKMVVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE+  G   IV+ EIPY+V K+ L++KI EL I +++  + ++RDE+      ++ 
Sbjct: 244 RTSIEEIRGGRKQIVIAEIPYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D D ++  +F  +D++  +  NM  +     PQ+M L  +L  ++ H++EV+ +
Sbjct: 304 ELKKDADADSVLNYLFKNTDLQVSYNFNMVAIHNR-RPQLMGLRELLDAYIEHQKEVVTK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++    R  I+ GL+ A   +DE+IA IR        K  ++++F+ TE Q +AI
Sbjct: 363 RTEFDLKKARDRKHIVDGLMKALSILDEVIAAIRASKDKKDAKANLIAKFAFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E  +L  + E   ++L+S K+ +  I  E+R++++ ++    
Sbjct: 423 VTLQLYRLTNTDITTLENEAADLEKKIETYLAILSSEKKLFTVIKKELRDIRKKYAD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R T  E    +     +AMI  E + V I+  G+I+     S   S    L  K+ 
Sbjct: 480 ---NRRTTIEAEIQELKINLEAMIPNEDVMVTITKDGYIKRTSLRSYTASNGRDLAIKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L      +T   +LL +  G    LP   L     +  G+ +  L+ L  ++ I+   
Sbjct: 537 DRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRWKDLGQHVSNLVTLERDEGIIKVL 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               ++    +L  +  G A   E  +  A    K    + +  ++++  V    G   V
Sbjct: 597 PIEDFNQPQFILFFTKNGMAKKTELQQYQAQRYSKALVAINLKGDDEVLDVHLTDGSKEV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +       L F   +I  +  R  GV+  + K+G  +      +  E      +  R  
Sbjct: 657 FLASRLGYGLRFDEAEISVVGQRAAGVKGMNLKEGDRLVSGKIIEDPEKDKVFIATQRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G ++ +
Sbjct: 717 VKKMKVSEFDKTSRAKRGVIMLR 739



 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKI 553
           E        L      +    +  +  G  +  +              A++ K  D +  
Sbjct: 587 ERDEGIIKVLPIEDFNQPQFILFFTKNGMAKKTELQQYQAQRYSKALVAINLKGDDEVLD 646

Query: 554 ALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
            +H     + + L++    G  +     +++  R  G        L     +V+  + + 
Sbjct: 647 -VHLTDGSKEVFLASRLGYGLRFDEAEISVVGQRAAGVKGMN---LKEGDRLVSGKIIED 702

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDH-VAV 663
               K+ + + +G    ++ SE    +R  +  + +        ++   V    D  V+V
Sbjct: 703 PEKDKVFIATQRGAVKKMKVSEFDKTSRAKRGVIMLRELKAHPHRIAGAVIAGDDETVSV 762

Query: 664 VGENR 668
           + E  
Sbjct: 763 ITEKG 767


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 218/750 (29%), Positives = 390/750 (52%), Gaps = 24/750 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 SIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I++P+ +++ L++ I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VE V  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 VEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++T +  NM  +     P +M L  IL  +++H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQTTYNFNMVAIHNR-RPMLMSLTAILDAYISHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  I++GL+ A   +DE+IA+IR        K  ++S+FS TE Q +AI++L
Sbjct: 366 FELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISKFSFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + ++++++L+  K+    I   ++++K+ ++ S     
Sbjct: 426 QLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKTYADS----- 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D L
Sbjct: 481 -RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+ +  +  ++ ++ IV A    
Sbjct: 540 IHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDETIVKAISVK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            ++    LL ++  G     E +   A    K    L +  ++++  V    G   + + 
Sbjct: 600 EFNPASYLLFMTKNGMVKRTEMTHYKAQRYSKALVALNLKGDDELVDVHVTDGGCQLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + KDG    V    + E  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKDGDTV-VSGQILHETDSLVLVTQRGAIKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
           N        R   G ++ +   ++  + + 
Sbjct: 719 NLSEFEKTSRAKRGVIMLRELKKNPHRVVG 748


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 222/755 (29%), Positives = 390/755 (51%), Gaps = 26/755 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      ++K
Sbjct: 5   ERYLDLPLEEVIGDRFSRYSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  AAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +++ +D+  VD+   +++   EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAISAELMRDLDKGTVDYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI +    L+  P  S+++LLE I GPDFPTGGI V+    I ++Y  G+G   VR 
Sbjct: 185 HLPEIIDGITLLMQKPHTSLDELLEIIKGPDFPTGGI-VQGSNGIRQAYETGKGKIVVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +EE   G   IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++      ++ 
Sbjct: 244 RTAIEETRGGRKQIVITEIPYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  DP+ ++  +F  +D++  +  NM  +     P++M L  +++ ++ H+++V  R
Sbjct: 304 ELKKEADPEAILHYLFKNTDLQVTYHFNMVAIHNK-TPKLMGLLDLMQAYIDHQKQVFTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F ++    R  I++GL+ A   +DE+IA+IR        K  + S+F  TE Q +AI
Sbjct: 363 RSQFELKKAVDRAHIVEGLMKAVSILDEVIAVIRASKDKKDAKANLQSQFGFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L  +  ++ ++L S K+  + I  E+ ++K+ F+    
Sbjct: 423 VTLQLYRLTNTDITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKTFASP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T       +       +I  E + V I+  G+++     S   S       KEG
Sbjct: 481 ----RRTEIRAEIEEIKINMDMLIASEDVRVTITKAGYVKRTSLRSYSASSQDGPGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L ++  A+TTD +LL +  G    +P  +L     +  G+ +  L+ ++ + +I+ A 
Sbjct: 537 DRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAIDADDEIIAAQ 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
           +   +  T  LL ++  G A     +   A    K    LK+   +++  V+   G   +
Sbjct: 597 IIREFAETKYLLFMTRAGMAKRSTLNLYQAQRYSKPLMALKLKEGDEVVRVLLTDGQQEL 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWIDSAGRSY 719
            V       L FS + +  +  R  GV+  + K+G        F + + + ++ +  R  
Sbjct: 657 FVATAFGYGLWFSEEDVSLVGQRAAGVKGINLKEGDYCIGAEAFGLEDSVEFLVATHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
            +           R   G L+ +   ++   + + 
Sbjct: 717 VKKMAITEFEKSSRAKRGVLMLREL-KNNPHRLVG 750


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/744 (28%), Positives = 382/744 (51%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I  P  S+++L+E I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIQMPSCSVDELMELIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 IETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLPSILDAYIGHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+       K  +++++  TE Q +AI++L
Sbjct: 366 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++       
Sbjct: 426 QLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD------ 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D +
Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+    LI ++ ++ IV A    
Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  + + 
Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+     V    + +  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGAVKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   ++
Sbjct: 719 SLSEFEKTSRAKRGVVMLRELKKN 742



 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E    + ++ G+        +  + + +  +  ++ KE D +        +D I+L +  
Sbjct: 653 ESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQR 712

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           G    +              + +L +L  N   +V  F      +L+  + KG+   ++ 
Sbjct: 713 GAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLEQRLMAETEKGDRKELQT 772

Query: 629 SEIIANTRKGKTFLKVSSEE 648
            E+  N R          EE
Sbjct: 773 KELRTNDRYSNGSFFFDEEE 792


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/744 (28%), Positives = 382/744 (51%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I  P  S+++L+E I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 IETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLPSILDAYIGHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+       K  +++++  TE Q +AI++L
Sbjct: 366 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++       
Sbjct: 426 QLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD------ 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D +
Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+    LI ++ ++ IV A    
Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  + + 
Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+     V    + +  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGAVKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   ++
Sbjct: 719 SLSEFEKTSRAKRGVVMLRELKKN 742



 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E    + ++ G+        +  + + +  +  ++ KE D +        +D I+L +  
Sbjct: 653 ESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQR 712

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           G    +              + +L +L  N   +V  F      +L+  + KG+   ++ 
Sbjct: 713 GAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLEQRLMAETEKGDRKELQA 772

Query: 629 SEIIANTRKGKTFLKVSSEE 648
            E+  N R          EE
Sbjct: 773 KELRTNDRYSNGSFFFDEEE 792


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/768 (36%), Positives = 427/768 (55%), Gaps = 40/768 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A 
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RY
Sbjct: 69  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T ++ L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT I
Sbjct: 129 TEARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGIAVGMATEI 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +
Sbjct: 189 PPHNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIYENGRGSLK 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAK 293
           VRARW +EE+ RG W +VVTE+P      +++E+I E                   + A 
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTPDQQQLKAT 308

Query: 294 RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES +D  VR+V  PK++++D    ++++   + +E+  P+N+ ++     
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINLVMIGTDGR 368

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+   L  IL EW+A R + + RR+  R+  ++ R+ IL+G ++  LNIDE+I IIR  D
Sbjct: 369 PRQKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PKP +V  F L++ Q + IL +RLR L +LE  +I+ EL  L  E+  +D LL S    
Sbjct: 429 EPKPALVEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMM 488

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             +I  EI    + +S        R T  +  R   A   +  +  EP+TVV+S +GW+R
Sbjct: 489 RRRIIKEIETDAKQYSPEDK--DPRRTLIQEERRAAA---EVRVIDEPVTVVMSQKGWVR 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + + H  D     FK GD+L       T D +L+  T+G+ Y++P  +L  GRG G  I 
Sbjct: 544 TRQGHGHDPQQFTFKAGDALYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGGRGDGVPIT 603

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            LI+L     +   F  +++ ++L+ ++ GN F     ++    + GK+FL +   +   
Sbjct: 604 TLIELQSGSQVAHTFAGNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGDAPL 663

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
               +  +  H A +  N +LL+ +++++  +S  G+GV L   +      +    +   
Sbjct: 664 APAPIGEEATHAACLSGNGRLLLVALEEVKVLSAGGRGVILMELEP-KEKLLQAVAVGAP 722

Query: 709 LTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLV------PKGFP 745
              +  AGR    S        LL ++GKR   G  +      P+  P
Sbjct: 723 GLVLSGAGRGGKPSSQKLAGQSLLPYVGKRARKGKQLEAKLKEPRIDP 770


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 272/741 (36%), Positives = 439/741 (59%), Gaps = 22/741 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
            +   L   +E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   +  KKSA
Sbjct: 6   TEQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEAR 135
           R VG+VIGK HPHGD + Y+++V +AQ F  RYPL+ GQGN+G+  D  S AA RYTE+R
Sbjct: 66  RTVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T  A+ +L  +++  V++   ++    EP   P++ PN+L NG SGIAVGMAT++  HN
Sbjct: 126 LTGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A  ALI +P ++ + L++YI  PDFPTGG +V +RE I   YR GRG  R+RA 
Sbjct: 186 LGEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRAT 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVL 313
           W +E+       I++ ++PYQV  S++ E+IA+ + AK++  LED+RDES  +  +R+VL
Sbjct: 246 WHLEDGN-----IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVL 300

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            P++  +D + LM+ +F  +D+E R+   MN++ +   PQV  L  IL+EWL +R E + 
Sbjct: 301 VPRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVR 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           RR + R+ A++ R+ IL+GLLIAYLN+DEII IIR ED+P+PV+++ F+L+E Q +AILN
Sbjct: 361 RRLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILN 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RLR L +LEE QI++E + L AE++ +  LL S ++    IA E+      +  +    
Sbjct: 421 TRLRHLARLEEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDA---- 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            RRT   E      A  +  +   E +T+++S  GWIR  K H++D +AL +K GD+   
Sbjct: 477 -RRTVIIEREA-AVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLT 534

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            +   +  +  LL+ +G++YTL    L S R +GE +   + ++ +  I+ A + +   +
Sbjct: 535 QISGRSNQQACLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERR 594

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLL 671
            L+ +  G  F++  +E+ + T+ GKT +      +   +  +      +  +    ++ 
Sbjct: 595 YLIAADNGYGFLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVA 654

Query: 672 IFSIDQIPEMSRGKG-----VRLQSYKDGGISDVICFKICEG-LTWIDSAGRSYNRSEND 725
           +   ++IPE+++GKG     +  ++Y   GI       +  G    + S  +      N+
Sbjct: 655 LIPAEEIPELAKGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANE 714

Query: 726 LLGWLGKRGGVGSLVPKGFPR 746
              +L  RG  G+ +PK + R
Sbjct: 715 REHYLTPRGHKGNWLPKNYRR 735


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 213/744 (28%), Positives = 382/744 (51%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I  P  S+++L+E I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGI-IQGVDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 IETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLPSILDAYIGHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+       K  +++++  TE Q +AI++L
Sbjct: 366 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++       
Sbjct: 426 QLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD------ 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D +
Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+    LI ++ ++ IV A    
Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  + + 
Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+     V    + +  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGAVKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   ++
Sbjct: 719 SLSEFEKTSRAKRGVVMLRELKKN 742



 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E    + ++ G+        +  + + +  +  ++ KE D +        +D I+L +  
Sbjct: 653 ESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQR 712

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           G    +              + +L +L  N   +V  F      +L+  + KG+   ++ 
Sbjct: 713 GAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLEQRLMAETEKGDRKELQT 772

Query: 629 SEIIANTRKGKTFLKVSSEE 648
            E+  N R          EE
Sbjct: 773 KELRTNDRYSNGSFFFDEEE 792


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 241/765 (31%), Positives = 377/765 (49%), Gaps = 69/765 (9%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  +    +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG----SWCIV 269
             +L++Y+ GPDFPTG  I+    +I E+Y  GRG   +R    +E + +        I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G  PQ++ L   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D II +IRN       K  +++ + L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALAHLDSIINLIRNAPDAPTAKGELINSYGLSEVQADAILQMQLRRLTALEADK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E + L  +   +  +L+  ++    I  E  ++K  F+       RRTT        
Sbjct: 419 IRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFTTP-----RRTTITHAEG-- 471

Query: 507 KATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAH 558
                  +I  E + ++++ +G+I+             +   +    KE D+++  L   
Sbjct: 472 -EIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAGAKVKEDDTIEHFLTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
             D +L  S  G  Y+L A  +   S    G  I  ++ +   + I +      + S   
Sbjct: 531 DHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEY 590

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLI 672
           L++++  GN               G   + +   ++++ V +    D V +       + 
Sbjct: 591 LVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIH 650

Query: 673 F--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT------------------- 710
           F    DQ+  + R  +GV+    K G   ++I   I                        
Sbjct: 651 FRCDNDQMRPLGRATRGVKSMKLKTG--DELIGMDILPAAILNTLNTEMEEELTEVEETS 708

Query: 711 -------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                         +      Y +        L  R G G    K
Sbjct: 709 DNIEETSNILGPWVLIITIGGYGKRVPVGQFRLQNRAGQGLTATK 753



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 85/277 (30%), Gaps = 52/277 (18%)

Query: 484 EIFSKSTDLGRRRTTFCEV------SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           + +         R T               + +  +    E   V+++  G I+     +
Sbjct: 548 KAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEYLVMLTKGGNIKKTALEA 607

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGH-- 586
                   L A+  +EGD L+    A   D +++ S  G A      N      GR    
Sbjct: 608 FSNIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRG 667

Query: 587 ------------------GEAIQLLIDLNHNQDIVTAFVYDST---------CKLLVVSS 619
                               AI   ++    +++                    +L+++ 
Sbjct: 668 VKSMKLKTGDELIGMDILPAAILNTLNTEMEEELTEVEETSDNIEETSNILGPWVLIITI 727

Query: 620 KGNAFIVEESEIIANTRKG--KTFLKVSSE---EKMKLVVKVTGDHVAVVGENRK-LLIF 673
            G    V   +     R G   T  K  +    +++  +  V  D   ++  NR  ++  
Sbjct: 728 GGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQ 787

Query: 674 SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
           SI+ I   SR   GVR+Q   +D  I+ V       G
Sbjct: 788 SINAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAG 824


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 234/769 (30%), Positives = 385/769 (50%), Gaps = 39/769 (5%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            DN  + +T+  + ++ +     L + YL Y++S    RAIPD+RDG KP  RR++ AM 
Sbjct: 2   SDNQQDFSTVTPQGIEKL-----LSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMD 56

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ L  G+++ K AR+VG+VIGK HPHGD SVYD++VR+AQ F  R  LI GQGNFG+ID
Sbjct: 57  KLNLRKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSID 116

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAAYRYTE RM ++AE +L  +D++ VD + T++   +EP V P+++PNLL NGT+G
Sbjct: 117 GDSAAAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I VGMATSIP HN+ E+  A +AL+D P I+IE++++++ GPDFPT GI +   + I   
Sbjct: 177 IGVGMATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISI-GFDGIRRL 235

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRGG  +R R  + E   G   IV+TEIPY V K  +++KIAEL+  K I  +  + 
Sbjct: 236 YETGRGGVHLRGRAEIIE-KNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLN 294

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE S+     V+     +    +++  ++  + +         V    + P+ + L  +L
Sbjct: 295 DESSSRVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLV-VDNKQPKTLNLKQLL 353

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
           + +L HR EV+ RR  F ++  +RR  IL+GLL A  +IDE+I IIR   N +     + 
Sbjct: 354 QAYLDHRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLK 413

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            RF L+  Q  AIL++RL  L  L   ++ +E + L+        LL + + + + +  E
Sbjct: 414 ERFELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKEE 473

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + EV++ F+       RRT   E+   ++    + +I +   T+ ISN G+I+       
Sbjct: 474 LIEVRDKFADE-----RRT---EMRPGERDINYEDLIARASATITISNEGYIKRVPTEIY 525

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGE 588
                    +  +  K+ D +K    A T D I+  +  G+ + L   ++        G+
Sbjct: 526 RTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVSKGK 585

Query: 589 AIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           A+  L++    + +          D    +++ +  G       +      +K    + +
Sbjct: 586 AMVNLLEFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVL 645

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++ +       G+  + +         F         R  +G R     +      + 
Sbjct: 646 DEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRTQGRVTRGCRGIRLSESDQVVAMS 705

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + E    +    +   +        L KRG  G    K   + G ++
Sbjct: 706 I-VEESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKL--KEGDYV 751



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVI-SNRGWIRSL------KSHSVDLSALHFKEGDSLKI 553
           E     +A +    ++ E   +++ +  G ++              + A+   E D L  
Sbjct: 594 EKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDLIE 653

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           A       +I+L + +G A      +    +G        I L+ +  +V   + + +  
Sbjct: 654 AKLTDGNKKIILSTREGIACHFKESD-CRTQGRVTRGCRGIRLSESDQVVAMSIVEESED 712

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
           +LVV++KG        +     R  KG   +K+   + +  V+ +   D + +      +
Sbjct: 713 ILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGDYVVEVMMIEDTDEIIMTTMEGLM 772

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707
           +  S + I  + R  +GV +  +K      +   ++ E
Sbjct: 773 VRISAEPIRSLGRASQGVTIMKFKKASDLIISASRVVE 810


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 214/744 (28%), Positives = 384/744 (51%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 9   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAK 68

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 69  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 128

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 129 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 188

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I  P  S+++L+E I GPDFPTGGI ++  + I ++Y  G+G   +R +  
Sbjct: 189 EVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGI-IQGVDGIKKAYETGKGKIIIRGKAE 247

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 248 IETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELK 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 308 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLPSILDAYIGHQKEVVTNRSV 366

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+       K  +++++  TE Q +AI++L
Sbjct: 367 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSL 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++       
Sbjct: 427 QLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD------ 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
           +R +  E    +     + M+  E + V ++  G+++     S    +      K+ D +
Sbjct: 481 KRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 540

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+ +  +I ++ ++ IV A    
Sbjct: 541 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDETIVKAIPIK 600

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  + + 
Sbjct: 601 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMA 660

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+     V    + E  + +    R   +  
Sbjct: 661 THLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQESDSIVLFTQRGAVKRM 719

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   R+
Sbjct: 720 SLSEFEKTSRAKRGVVMLRELKRN 743



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E    + ++ G+        +  + + +  +  ++ KE D +        +D I+L +  
Sbjct: 654 ESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQESDSIVLFTQR 713

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           G    +              + +L +L  N   +V  F      +L+V + KG    ++ 
Sbjct: 714 GAVKRMSLSEFEKTSRAKRGVVMLRELKRNPHRVVALFACGLEQRLMVETEKGERKELQA 773

Query: 629 SEIIANTRKGKTFLKVSSEE 648
            ++  N R       +  EE
Sbjct: 774 KDLRTNDRYSNGSFFIDEEE 793


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/751 (36%), Positives = 456/751 (60%), Gaps = 24/751 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E + ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +
Sbjct: 1   MKEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRY 131
           KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YP + GQGN+G+  D  S AA RY
Sbjct: 61  KKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+++T+ A L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I
Sbjct: 121 TESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           PSHN+ EI +A + LIDNP+  +  LL+ I GPDF     I+ S++ + E Y  G+GGF+
Sbjct: 181 PSHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--SAEDV 309
            +A+W      +    I++  +PYQ   S+++E+IA+ ++ K+IP++ D+ DE    E V
Sbjct: 241 AQAQW-----AQDKNQIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPV 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+  K+  ++ + +M  +F  +D++  + +NMN++S+   P+V  L  +LKEWL  R+
Sbjct: 296 RLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRK 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           E + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +++ F L++ Q +
Sbjct: 356 ETVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIITAFKLSDIQAN 415

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RLR L KLE+ +++ E D L+AE+  I+ +L+S  +    I  E+ E+K+ F   
Sbjct: 416 AILEIRLRQLAKLEQIKLEQERDTLVAEQTDIEKILSSKTRLKTLIKNELIEIKDEF--- 472

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              G  R +    +   K   ++  +  EPITVV+S  GWIRS K H +D S+L ++  D
Sbjct: 473 ---GEVRXSPIREATEAKVFSEEETLVTEPITVVLSAAGWIRSAKGHEIDPSSLSYRGED 529

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            L+      +    + L ++GKAY+L + +L S RG G+ I   +  +     +++ + +
Sbjct: 530 VLQDYGRGKSNQVSVFLDSNGKAYSLASHSLPSARGMGDPITGRVSADSGVKFISSLIGN 589

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGEN 667
              K +++++ G  +I E   +++N + GK F+K+  E  +   +KV  DH  +A V   
Sbjct: 590 DEDKFMIMNTAGYGYISEFKNMVSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNI 649

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYN 720
            +LLIF ID++P + +GKG ++ +        K+  ++          L  I+S  R   
Sbjct: 650 GRLLIFKIDELPTLGKGKGNKIINIPTAKFIAKEELMTHAQLVSEASSLR-IESGKRFLT 708

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
               DL  ++  R   G+++P+G+ +  K +
Sbjct: 709 LKLKDLENYISTRAKRGNMLPQGYRKVDKMI 739


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/761 (32%), Positives = 410/761 (53%), Gaps = 32/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +
Sbjct: 72  QDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHR 131

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 132 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTE 191

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 192 ARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 251

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL  NPEI+I +++E++ GPDFPTG +I+   + I E+Y  G+G   VR
Sbjct: 252 HNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIM-GTKGIKEAYETGKGSISVR 310

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +   ++
Sbjct: 311 SIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIRII 370

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +   P++++  ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ 
Sbjct: 371 IDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVT 429

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F +     R+ IL+GL +A  NIDE+I II++       +  + +RF+L+E Q  A
Sbjct: 430 RRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSARFNLSEKQTKA 489

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L    +  E+ NL AE E+I S+L+  K     I  E+ E+K  F+   
Sbjct: 490 IVDMRLGRLTGLAIDSMIEEMKNLSAEIERIISILSDKKLLTELIIDELTEIKNKFAD-- 547

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT          +   + +I K  I +  S +G+++          +   V ++ 
Sbjct: 548 ---DRRTVID--KNLSASIDDEDLITKRDIVITTSTKGYVKRIDLEEYKTQRRGGVGITT 602

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID---LN 597
           +     D +   +   T   +L+ +  G+ Y + A  +     +  G +   +I    ++
Sbjct: 603 MKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVD 662

Query: 598 HNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +++    D       L   +  G       SE       GK    +   +++    
Sbjct: 663 EGEKVISMLAVDEYSDNKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKENDELIRAS 722

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +  D  V +  + ++++ F  ++   +SR   GV+  +  D   + +      EG   +
Sbjct: 723 IINDDELVLLANDKQRIVKFHSNEFRALSRIATGVKGITLADDE-TCISASSSSEGELIL 781

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +  +  L  L  RGG G +      ++G  + +
Sbjct: 782 TIGRNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 11/262 (4%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +  +  + +   A EI E+      ++ +        +      + L             
Sbjct: 625 IFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDNKYLFT 684

Query: 524 ISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            +  G I+                A + KE D L  A   +  + +LL +   +     +
Sbjct: 685 ATKLGIIKKTSLSEFQIININGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHS 744

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
               +       ++  I L  ++  ++A        +L +   G   I   S      R 
Sbjct: 745 NEFRALSRIATGVKG-ITLADDETCISASSSSEGELILTIGRNGFGKITHHSLFRLVHRG 803

Query: 638 GKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
           GK  + ++S++   LV        D + ++  +   +   I  I +  R  KGV+L + K
Sbjct: 804 GKGVIGINSDKAGNLVFARFVNPHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLK 863

Query: 694 DGGISDVICFKICEGLTWIDSA 715
                  +     E  + ID  
Sbjct: 864 KKEQIQAVEIVKLENDSSIDET 885


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 275/755 (36%), Positives = 425/755 (56%), Gaps = 33/755 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             EE   +++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL   A 
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RY
Sbjct: 69  PVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T ++ L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT +
Sbjct: 129 TEARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGIAVGMATEV 188

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A +A+I NP I++ +LL  + GPD+P GG I+     I + Y  GRG  +
Sbjct: 189 PPHNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIYESGRGSLK 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAK 293
           VRARW +EE+ RG W +VVTE+P      +++E+I EL                  + A 
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTPEQQQLKAS 308

Query: 294 RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            + +L+ +RDES +D  VR+V  PK+++++    ++++   + +E+  P+N+ ++     
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNLVMIGTDGR 368

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+   L  IL+EW+  R   + RR+ +R+  ++ R+ IL+G ++  LNIDE+I IIR  D
Sbjct: 369 PRQKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+  +D LL S    
Sbjct: 429 EPKPALMERFGLSDRQAEDILEIRLRQLARLEAIRIEKELKDLREEQADLDVLLKSDTMM 488

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
             +I  EI    + +S        R T  +  R   A   +  +  EP+TVV+S +GW+R
Sbjct: 489 RRRIIKEIETDAKQYSPEDK--DPRRTLIQEERRAAA---EVRVVDEPVTVVVSQKGWVR 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           + + H  D     FK GD+L       T D +L   T+G+ Y++P  +L  GRG G  + 
Sbjct: 544 TRQGHGHDAQQFTFKAGDALYDTFECRTIDVLLAFGTNGRVYSVPVASLPGGRGDGVPLT 603

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            LI+L     I   F   +  ++L+ +  GN F+ + +++    + GK+FL +   +   
Sbjct: 604 TLIELQPGSQIAHTFAGSAEQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPL 663

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
               +  +  HVA +  N +LL+ ++D++  +S  G+GV L   +              G
Sbjct: 664 TPAPIASEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILMELEPKEKLLQAVGVGAPG 723

Query: 709 LTWIDSAGRSY-----NRSENDLLGWLGKRGGVGS 738
           L    +  R         +  +L+ ++GKR   G 
Sbjct: 724 LVVSGTTPRGGKPDTQKLAGANLMPYVGKRARKGK 758


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 216/748 (28%), Positives = 380/748 (50%), Gaps = 22/748 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+
Sbjct: 4   QERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  +  I+ P  ++E L+  I GPDFPTGGI ++  + I ++Y  G+G   +R
Sbjct: 184 HHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGI-IQGVDGIKKAYETGKGKIMIR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E +  G   IV+TEIPY+V K+ L++K+ E  I +++  + ++RDE+      ++
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D + ++  ++  SD++  +  NM  +     P +M L  IL  ++AH++EV+ 
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNR-RPTLMTLTTILDAYIAHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
            RS++ ++    R  I+ GL+ A   +DE+IA IR+ +     K  ++ ++  TE Q +A
Sbjct: 362 NRSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMDKYDFTEAQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E   L     +++ +L + K+    I   ++++K+ ++   
Sbjct: 422 IVSLQLYRLTNTDITQLRDEASELDVRIAELEDILGNEKKLLKVITNSLKKLKKTYADE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R +  E    +     + MI  E + V ++  G+I+     S   S       K+
Sbjct: 481 -----RRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKD 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L      +TTD +LL +  G     P   L     +  G+ I  +I ++ ++ I  A
Sbjct: 536 TDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DH 660
                +D T  LL  +  G     E  +  A    K    L +   +++  V   TG   
Sbjct: 596 IPIKEFDETSYLLFFTKGGMVKKTELLQYKAQRYSKPLVALNLKGNDELVDVHVTTGQQE 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N   L F  +++  +  R  GV+  + KDG           +    + +  R  
Sbjct: 656 LFIATKNGYGLWFDEEEVSVVGPRAAGVKGINLKDGDEVVSGQIIDPKNDVLVLTTQRGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  N        R   G L+ +   ++
Sbjct: 716 VKRMNLSEFDKTSRAKRGVLMLRELKKN 743


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/770 (36%), Positives = 425/770 (55%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  LNIDE+
Sbjct: 361 VMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PKP ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+ ++D 
Sbjct: 421 IRIIRESDEPKPALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQAELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + F        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQFGD-----DRRTLIQE----ERRAAAEVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D    A +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLFPLAEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL------LGWLGKRGGVGS 738
             ++  + F    G     +  RS   +E           + GKR   G 
Sbjct: 712 ETLAQALAFGPA-GFVVSGAGPRSGKATEQTFTTTRAQEPYAGKRARKGR 760


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/764 (32%), Positives = 403/764 (52%), Gaps = 32/764 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T     +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+   +
Sbjct: 65  TDPINGLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSS 124

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
             +KSARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD AAA R
Sbjct: 125 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMR 184

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARM+++A  +L G+ +D V+F D Y+  + EPVV PS+FPN+L +G +GIAVGMAT 
Sbjct: 185 YTEARMSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATE 244

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E   A +A   NPEI+ ++L+E+I GPDFPTG  I+   + I ++Y  G+G  
Sbjct: 245 IPPHNLTETINATIAFARNPEITTKELMEHIKGPDFPTGATIL-GVKGIYDAYETGKGKI 303

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R++  +EE   G   I++TEIPY V+K+ +IEKI EL   K +  + ++RDES  +  
Sbjct: 304 PLRSQAKIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGI 363

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +  +L+  ++  S ++T    N+  L     P+++ L  IL  +L H+ E
Sbjct: 364 RIVIDVKKGYNAHILLNKLYQKSYLQTNVNANLVALV-HGEPKLLNLKQILSIYLDHQIE 422

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR  F ++    ++ IL GL IA  NIDE++ II+   N+   +  +  RF+L++ Q
Sbjct: 423 VVTRRLKFDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKRFNLSDRQ 482

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++ LR L  L   ++  E+D L  E   +  +L S +   N I  E+ E+++ F 
Sbjct: 483 TKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKGILESREALINLIIDELSEIRDRFG 542

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RRT   E +    +   + +I    I +  S +G+++ +K           + 
Sbjct: 543 DE-----RRTQIDEFTV--SSISDEDLIPVNNIVITTSVKGYVKRMKLEDYNMQNRGGIG 595

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL- 596
           +S +   + D +   L   T   ++L +  G+ Y + A  +  G  +  G     +I   
Sbjct: 596 VSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQSKGTPFINIIPSL 655

Query: 597 --NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
                + +V+    D       L+ ++ KG       SE  +    GK   ++  ++ + 
Sbjct: 656 NEKEGEKVVSLLSVDEYNDDHFLVTITEKGVIKKTALSEYESIRSNGKNAFRLKEDDHLV 715

Query: 652 LVVKVTGDHVAVVGENRK-LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
               VT ++  ++  N K ++ FS   +  +SR  +GVR     D     +      +G 
Sbjct: 716 NAFIVTDENEILIASNGKNVVKFSSLDLRPLSRNSQGVRGIRL-DENKKVIAASSDLDGE 774

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + + +  +     L KRGG G        ++G  + +
Sbjct: 775 FILSIGTKGFGKLTHSDEFRLIKRGGKGVTAINA-DKAGDLIFA 817



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 13/204 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                +   V I+ +G I+               +A   KE D L  A      + IL+ 
Sbjct: 670 DEYNDDHFLVTITEKGVIKKTALSEYESIRSNGKNAFRLKEDDHLVNAFIVTDENEILIA 729

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S         + +L     + + ++  I L+ N+ ++ A        +L + +KG   + 
Sbjct: 730 SNGKNVVKFSSLDLRPLSRNSQGVRG-IRLDENKKVIAASSDLDGEFILSIGTKGFGKLT 788

Query: 627 EESEIIANTRKGK--TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
              E     R GK  T +       +     V   D   ++  +   +  SI Q+   SR
Sbjct: 789 HSDEFRLIKRGGKGVTAINADKAGDLIFAKFVNKNDEALIITSSGTTIRISISQLSVTSR 848

Query: 684 G-KGVRLQSYKDGGISDVICFKIC 706
             KGV++ + ++    ++I  +I 
Sbjct: 849 ATKGVKIINLREN--DEIIAVEIV 870


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 277/716 (38%), Positives = 413/716 (57%), Gaps = 33/716 (4%)

Query: 3   VDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN  +  T  +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTPDLFTGSDAPAGDALTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ 
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 121

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+    EP + P + P +L NG S
Sbjct: 122 DGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGAS 181

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+AT IPSHN++E+  AA+ALI +P ++  +L+  I GPDFP GG I+ S   I  
Sbjct: 182 GIAVGLATEIPSHNLREVAAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEIST 241

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------ 289
           +Y  GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL            
Sbjct: 242 AYESGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTL 301

Query: 290 ------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + LL+ +RDES ++  VR+V  PK+R++D    + S+   + +E+   L
Sbjct: 302 TPEQLNTKKAMLDLLDAVRDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATL 361

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ ++     P    L  IL EW+  R+  + RR   R+  +D R+ IL+G +I +LNID
Sbjct: 362 NLVMIGADGRPGQKGLLTILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNID 421

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D+PK  ++S F L+E Q + IL +RLR L +LE+ +I+ ELD L  EK K+
Sbjct: 422 EVIRIIRESDEPKAALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKL 481

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + LL +       +  EI       + +   G  R T  +  +       +A +  EP+T
Sbjct: 482 EELLANESAMKRLMIKEIE------ADAKQYGDDRRTLIQQEKRA---TFEAKVVDEPVT 532

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           VV+S +GW+R+LK H +D +   FK GDSL  A    T DR++   + G+ Y++    L 
Sbjct: 533 VVVSQKGWVRALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLP 592

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            GRG G  +  LI+L     ++  F   +  +LL+ SS G  F+ +  ++++  + GK F
Sbjct: 593 GGRGDGVPVTSLIELESGTHLMHYFAASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAF 652

Query: 642 LKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694
           + +         + V      VA +    +LL+F +D++  +   G+GV L +  D
Sbjct: 653 MTIDEGAAPLAPMPVLPNAKQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 289/774 (37%), Positives = 432/774 (55%), Gaps = 44/774 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E+   +++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL   A
Sbjct: 29  DLNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSEMGLRADA 88

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA R
Sbjct: 89  KPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMR 148

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT 
Sbjct: 149 YTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATE 208

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN++E+  AA+AL+ +P++S  +LLE + GPD+P GG I+ S   I + Y  GRG  
Sbjct: 209 IPSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIYETGRGSI 268

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIA 292
           +VRARW +EE+ RG W IVV E+P      R++++I E+                  + +
Sbjct: 269 KVRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTLEQNNLKS 328

Query: 293 KRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             + +L+ +RDES++D  VR+V  PK++++D +  +  +   + +E+  P+N+ ++    
Sbjct: 329 TILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDD 388

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P+   L  IL EW+  R   + RR+  R+  +  R+ IL+G L   LNID++I IIRN 
Sbjct: 389 RPRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKVIKIIRNS 448

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ ++ LL S   
Sbjct: 449 DEPKADLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKELKTERDDLEGLLQSDTA 508

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
              +I  EI    + F        RRT   E    DK  + +  +  EP+TV++S +GW+
Sbjct: 509 LRKRIIKEIESDMKDFGD-----DRRTLIQE----DKRAVAETKVIDEPVTVIVSQKGWV 559

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R  + H  D +   FK GD+L       T D I    +DG+ YT+P   L   RG G  +
Sbjct: 560 RVRQGHEHDPTQFSFKAGDALYATFEVRTVDVIQGFGSDGRVYTVPVSELPGARGDGSPL 619

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSS 646
              ++L     +V  +   S   +L+ +  G  F+   +++    + GK+FL    KV  
Sbjct: 620 TSFVNLASGSQMVAYYAGQSDDLVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPG 679

Query: 647 EEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFK 704
           +  +    V+V    VA + E  KLL+F +D++  + + GKGV L    D          
Sbjct: 680 DAPLGAAKVRVGMKQVACLSEASKLLVFPLDELKRLPTGGKGVILMGLDDNEFLASAIAV 739

Query: 705 ICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLV-PKGFPRSGKFLS 752
             +G T+   AGR+   +E       L  + G R   G  V P+   + GK  +
Sbjct: 740 GPDGATY-SGAGRAGKPTELGLDAKTLKSFAGNRARKGHFVEPRL--KDGKLTA 790


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/758 (32%), Positives = 402/758 (53%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L + YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINRPIEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ +D++ V+  D ++    EP V PSK PNL+ NG SGIAVGMATSIP
Sbjct: 121 EARLTRLAEEMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE S+E+L+++I GPDFPTGGI+V   E +   Y  GRG   V
Sbjct: 181 PHNLSETVDALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSE-LKNVYEEGRGRIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VEE G+    IV+TEIPY V K+ LIE+IA+L+       + +IRDES +    V
Sbjct: 240 RGKVHVEE-GKRLKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + D+++ +++  + ++  F + M V+   + P++M L G+L+ +L HR EV+
Sbjct: 299 VIEIPKDTNEDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   +R  +++GLL A   I  ++ I+RN       +  ++    ++E Q  
Sbjct: 359 RRRAEYEYEKFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLMETLEISEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +KE +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKDEKVREIMKKEFLYLKERYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   E++  +     + +I +E + + +S++G+         RS +     ++
Sbjct: 479 -----RRT---EITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRSQRRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  +    T   L ++  GKAY L    +        G+ I   ++L   
Sbjct: 531 VSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNLEDT 590

Query: 600 QDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +   K L++V+  G        E    T  +G   +++   +++      T
Sbjct: 591 ERIVALVPLNGKGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIRIEPGDEIVSARVST 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +   + V  +   ++ F +  +  M R   GV+    + G     +     E    +  
Sbjct: 651 SEKETLVVATKLGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             + + +     L  + KRGG G        ++G  ++
Sbjct: 711 TEKGFGKRTPVQLYRVQKRGGTGLRNISDVNKTGHVVA 748



 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 11/185 (5%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           E F  +T     R    E    D+    +    ++   VV +  G I        R +  
Sbjct: 621 EEFENATSNRGVRAIRIEPG--DEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
           ++  + A+  + GD +       + +  IL ++  G     P       +  G  ++ + 
Sbjct: 679 NAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNIS 738

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           D+N    +V         +++VV+  G    +  SEI    R  K    +   +     V
Sbjct: 739 DVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELGDDTISKV 798

Query: 655 KVTGD 659
            V  D
Sbjct: 799 AVVKD 803


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 278/770 (36%), Positives = 425/770 (55%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+  P+N+
Sbjct: 301 DQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+A+R E + RR+  R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PKP ++  F L+E Q + IL +RLR L +LE  +I+ EL +L  E+  +D 
Sbjct: 421 IRIIRESDEPKPALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQADLDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETVMRRRIIKEIETDAKQYGD-----DRRTLIQE----ERRAAAEVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDVLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLISTRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL------LGWLGKRGGVGS 738
             ++  + F    G     +  RS   +E           +  KR   G 
Sbjct: 712 ETLAQALAFGPT-GFVVSGAGPRSGKATEQTFTTTRAQEPYASKRARKGR 760


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 272/752 (36%), Positives = 412/752 (54%), Gaps = 51/752 (6%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA----AFKKSARIVGEV 82
           +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +         KSAR+VG+V
Sbjct: 25  QRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLSYSGNAPAKPVKSARVVGDV 84

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L
Sbjct: 85  LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTKIAGL 144

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L  +D+  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN++E+ +A
Sbjct: 145 LLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 204

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +AL+ NP +S E+L   + GPD+P GG I+ S   I ++YR GRG  +VRARW +E++ 
Sbjct: 205 CVALVKNPRLSDEELFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRARWKIEDLA 264

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDIRDE 304
           RG W +VVTE+P  V   +++E+I +                   + A  + +L+ +RDE
Sbjct: 265 RGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLAVLDGVRDE 324

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S++D  VRIV  PK   +    L+ ++   + +ET  P+N+ ++ +   P    L  +L 
Sbjct: 325 SSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDGRPVQKSLRQMLA 384

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EW+  R++ + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D PK  +++RFS
Sbjct: 385 EWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPKAALMARFS 444

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q + IL +RLR L +LE  +I+ EL  L  E+ +++ +L +       +  EI   
Sbjct: 445 LSERQAEDILEIRLRQLARLEAIKIEQELSELRKEQGQLEDILANPASLRRLMVREIEAD 504

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            + F+ +      R T  +  +   A ++      EP TVV+S +GW+R+ + H     +
Sbjct: 505 AKQFADA------RRTLIQEEKKVVAEVKVV---DEPTTVVVSQKGWVRTRQGHGHAADS 555

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             FK GD L       T D++++  ++G+ Y++P   L  GRG G+ +  LI+L     I
Sbjct: 556 FAFKAGDGLYGTFECRTVDQLIVFGSNGRLYSVPVAQLPGGRGDGQPVTTLIELEPGTQI 615

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
              F      +LL+  S G  F+ +   +++  + GK F+ +   E +     V G    
Sbjct: 616 AHYFAGPVQAQLLLAGSGGYGFVAQVEHMVSRNKGGKAFVALGEGETLCAPSHVAGTSAS 675

Query: 659 ------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
                  HV       ++L F I ++ +M + G+G+ L + +D     +           
Sbjct: 676 QPLAAATHVCCASAGGRILTFDIGELKQMDKGGRGLMLIALEDK--DSLAGAAAYTRSVR 733

Query: 712 IDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           I   GR   + E  L         G RG  G 
Sbjct: 734 IAGVGRGGRQREEQLEIRSLNNARGTRGRKGK 765


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 226/743 (30%), Positives = 388/743 (52%), Gaps = 24/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++K
Sbjct: 5   EQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEA
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP H
Sbjct: 125 RLSSIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +A++  PEI + +++ +I GPDFPT GII+   E I+++YR G+G   +R+
Sbjct: 185 NLREVIDACIAVMQKPEIELAEIMTFIKGPDFPTSGIIMGG-EGILDAYRTGKGRVYLRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 244 KTDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  +   +D++  +  NM  +     PQ + L  +L  ++ H+REV+  
Sbjct: 304 ELKKDADANGILAYLLKKTDLQITYNFNMVAIVNK-TPQQLGLKAMLTAYIEHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R  +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+I
Sbjct: 363 RTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +     
Sbjct: 423 LTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREKY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-----LHFK 546
            G  R +  +    +     + ++  E + V +SN G+I+     S   S         K
Sbjct: 478 -GIERRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELGSSGVK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           +GD +      +T + +L+ ++ G+ + LP   +     +  G AI  +I +    +IV+
Sbjct: 537 DGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKEDNIVS 596

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                   D    L+ VS KG     E  +            KV++++ +  VV   G  
Sbjct: 597 VIPVSNFEDPGKSLVFVSRKGQVKRTELKDYATKRAGAVAAAKVAADDSIIQVVMSDGHK 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++ +    + F+  ++  M R   GVR    +DG       +   +    +      
Sbjct: 657 DIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITDLG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +    L      RGG G    
Sbjct: 717 YGKRSLLLDYQAQSRGGKGMATF 739


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/784 (33%), Positives = 403/784 (51%), Gaps = 51/784 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V + +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLNTGQVVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +    +L+ + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV S   I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIILRGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R  +P+ ++  ++  + ++T F   +  L     P+ + L  +L+E
Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALV-EGQPRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R        K V+  +
Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LTE Q DAIL + LR L  LE   ++ E D L  +   +  LL   ++    +  ++R
Sbjct: 424 LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRRLLEDRRELLKSLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFC----------------EVSRADKATLQQAMIEKEPITVVI 524
            +K  +        RRT                        +K+ + Q     EP  +  
Sbjct: 484 TIKRKYGD-----TRRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQEEQPPEPAILEF 538

Query: 525 SNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--- 580
           ++RG++R L   S    A     + D L      +T   +L+L+T GK Y    G++   
Sbjct: 539 THRGYVRRLAPGSKKAKAETIMGDNDFLIQTEITNTHQDLLILNTSGKVYPAKVGDISPI 598

Query: 581 -LSGRGHGEAIQLLIDLNHN--QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIAN 634
                     I LL +      + I+  F       T  +++V+ +G    +   E+   
Sbjct: 599 SPRSPRGIPLITLLTNTAQGNVEGILGRFTLPETKDTHDMVIVTKQGRIKRISLEELTNV 658

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI--DQIPEMSRGKGVRLQS 691
           +++G T LKV  ++++        +H + +     + L F+I  DQ+P M RG  + LQS
Sbjct: 659 SKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCLRFAINDDQLPVMGRGA-MGLQS 717

Query: 692 ---YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               K   I   +     E L  +   G +   S + L    G RG +G+ + K   ++ 
Sbjct: 718 FRILKSQQIIGCVAIGQEENLLLVTQEGYAKKISSSSL--RAGNRGDLGTQMLKFHNKTD 775

Query: 749 KFLS 752
             ++
Sbjct: 776 NLVA 779



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 15/204 (7%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
             +     V+++ +G I+ +            ++ L  K+ D L  A   +    ++L S
Sbjct: 631 ETKDTHDMVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILAS 690

Query: 568 TDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           + G+   + +    L         +Q    L   Q I+          LL+V+ +G A  
Sbjct: 691 SGGRCLRFAINDDQLPVMGRGAMGLQSFRILKS-QQIIGCVAIGQEENLLLVTQEGYAKK 749

Query: 626 VEESEIIANTRK--GKTFLKVSSE-EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
           +  S + A  R   G   LK  ++ + +  + +      VA+V    +++  SI+ IP +
Sbjct: 750 ISSSSLRAGNRGDLGTQMLKFHNKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPIL 809

Query: 682 SR-GKG-VRLQSYKDGGISDVICF 703
            R  +G   L   +D  I+ V+  
Sbjct: 810 DRDARGENILPMTRDEIITSVVLV 833


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 226/801 (28%), Positives = 378/801 (47%), Gaps = 71/801 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +    +K V +   L   +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L  G  
Sbjct: 1   MENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +K ++IVG+ +G  HPHGD ++Y +LV +AQ +  R  L+ GQGNFG  DGD  AA RY
Sbjct: 61  TRKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA+++ +   ++  +D+D VDF  TY+ E +EP VFPS FPNLL NG +GIAVGMAT++
Sbjct: 121 TEAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNM 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   A+IDNP +++E+L +YI GPDFPTGG  V     I   +R GRG  R
Sbjct: 181 PPHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGG-DVLGFSGIDNYFRTGRGSVR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E    G   +++ E+PY V ++ L E+IAEL   K +  +  IRD S E   I
Sbjct: 240 IRGKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTCI 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  K R   P ++M  ++ L+ MET F +NM  +     P+ + +   +  ++ HRREV
Sbjct: 300 EIELK-RDARPQVVMNQLYKLTSMETSFAVNMLAIHDN-RPKTLAMMDAINFYIEHRREV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV------------ 416
           + RR+ + +   ++  E L+  L+A  ++D+ I+IIR+    D+ +              
Sbjct: 358 VVRRTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAE 417

Query: 417 ------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                          R+  TE QV++IL+LRL  L  LE  +I  E   LL   +    +
Sbjct: 418 SLGILIRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDI 477

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L +  +    +  E++ +K+ ++        R T       D A   + +I  + + V I
Sbjct: 478 LANESRVLGIVKDELKAIKDKYATP------RVTRIIPFSGDMAI--EDLIPNDTMIVTI 529

Query: 525 SNRGWIRSLKSHSVDLSALHFK--------------EGDSLKIALHAHTTDRILLLSTDG 570
           ++ G+I+   S    + A   K              E D ++    A   D ++  +  G
Sbjct: 530 THSGYIKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTG 589

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF--------------VYDSTCKL 614
           + Y      +   +    G  I+ L+DL   + I                    + +  +
Sbjct: 590 RVYVDRVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNV 649

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
           +  +  G       ++     + G   + +     +      +G D + +V  +   + F
Sbjct: 650 VFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRF 709

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             + +    R   GVR    + G     +     +  T + ++     +  +        
Sbjct: 710 PEEDLRTQGRNTIGVRGIRPRAGDYVVALAIVDPQK-TLLVASENGLGKRTSFDEYRTQG 768

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G        ++GK +S+
Sbjct: 769 RGGTGIKTMNCTDKTGKVVSA 789



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 521 TVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V  +  G ++              + A++ +EG+SL  A      D I+L++ DG +  
Sbjct: 649 VVFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIR 708

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
            P  +L +   +   ++  I       +V   + D    LLV S  G        E    
Sbjct: 709 FPEEDLRTQGRNTIGVRG-IRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQ 767

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R G     ++  +K   VV  T     D + ++    + +   +  + E  R   GV+L
Sbjct: 768 GRGGTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKL 827

Query: 690 QSYKDGGISDVICFKICEG 708
            +  +G     I   I + 
Sbjct: 828 MTLNEGESIQDISIVIPDD 846



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 65/198 (32%), Gaps = 21/198 (10%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           ++   IA  + E   + +     G                 ++ +               
Sbjct: 670 RKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDL--------------- 714

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            R+   +++ +  +  + GD +           +L+ S +G           +    G  
Sbjct: 715 -RTQGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQGRGGTG 773

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+ +   +    +V+A V     +L+++++ G +  ++ + +    R   G   + ++  
Sbjct: 774 IKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEG 833

Query: 648 E---KMKLVVKVTGDHVA 662
           E    + +V+    D  A
Sbjct: 834 ESIQDISIVIPDDEDEEA 851


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 220/800 (27%), Positives = 378/800 (47%), Gaps = 72/800 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+K +++   L+  +L Y++S I  RA+PD+RDG KP  RRI++AM E+ L     
Sbjct: 1   MSEDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+I G+  G  HPHG+  +Y +LV +AQP+  R PL+  QGNFG+++GD  AA RY
Sbjct: 61  HMKCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T +   ++  ++++ VDF   Y+E  +EPVVFP+ FPNLL NG +GIAVGMAT++
Sbjct: 121 TEARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNL 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++EI +   A IDNPEI+++ L++Y+ GPDFPTG  ++     I + +  G G  R
Sbjct: 181 PPHNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLL-GTAGIRDYFETGHGSLR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    + E G     I++T IPY V ++ L ++I EL   K IP +  IRDES E+ R+
Sbjct: 240 IRGHAEISETGT-KPQIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESDENTRV 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R   P +++ +++  + +ET F ++M  +     P+++ L   +  ++ HRREV
Sbjct: 299 VV-DLRREARPQVVLNNLYKQTSLETTFSVHMLAIDNR-RPRLLSLKDAISCYIEHRREV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV------------ 416
           + RR+ + ++  +   E L+ LL+A   +D+ I +IR     D+ +              
Sbjct: 357 IIRRTKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQ 416

Query: 417 ------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                          R+  T+ QV  IL+LRL  L  LE  +++++ + LL     +  +
Sbjct: 417 SLGILIRSQPSIRSGRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDI 476

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L    +    I  E+  ++  +      G  R T  E +  +     + +I  E   V I
Sbjct: 477 LAKESRVLTIIKDELGNIRAKY------GTERLTKIEAAEGE--INIEDLIANERNIVTI 528

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKE-------GDSLKIALHAHTTDRILLLSTD 569
           ++RG+++                L  +  +E        D ++    A   D ++  +  
Sbjct: 529 THRGFVKRTLASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNT 588

Query: 570 GKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF-----------VYDSTCKLLV 616
           G+ Y      +      G G +I+ L++L   + I               V+ S   +L 
Sbjct: 589 GRVYVERVYQVPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLF 648

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +  G     E ++     + G   +K+     +  V+   G   + +V      +    
Sbjct: 649 ATKDGTVKKTELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEE 708

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
             I  M R   GV     + G    V+    + E    +  +     +           R
Sbjct: 709 TDIRPMGRAAAGV--MGIRPGETDHVVSLTAVDETAQLLVVSENGLGKRTPFEEYRKTNR 766

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           G  G        ++G  +++
Sbjct: 767 GAKGVTTMNVTEKTGNVVAA 786



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 16/211 (7%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            +   +  +  G ++  +           + A+   EG+ L   +  + +  I L++++G
Sbjct: 642 SDRFVLFATKDGTVKKTELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEG 701

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEE 628
                   ++   R  G A   ++ +   +   +V+    D T +LLVVS  G       
Sbjct: 702 MCVKCEETDI---RPMGRAAAGVMGIRPGETDHVVSLTAVDETAQLLVVSENGLGKRTPF 758

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            E     R  K    ++  EK   VV        D + ++  + + +   +  I +  R 
Sbjct: 759 EEYRKTNRGAKGVTTMNVTEKTGNVVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRN 818

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +GV+L +  +G     +   I +    ++ 
Sbjct: 819 AQGVKLMNLSEGETIQDVAKVIPDDEEKVEG 849


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 236/732 (32%), Positives = 372/732 (50%), Gaps = 42/732 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T  +  +    LR   E  YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 70  TEEGGTGSDSRIIETELRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 129

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VGEV+GK HPHGD +VYD+LVRLAQ F  R  L+ G GNFG++D D 
Sbjct: 130 LQHNKPFRKCARVVGEVLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDP 189

Query: 126 AAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  VA  ++L  ++ D VDF   ++    EP V P++ PNLL NGTSGIA
Sbjct: 190 PAAMRYTECRLQAVASAMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIA 249

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR----ESIV 240
           VG+AT IP HN++E+ E   ALI NP+I++ +L+ +I  PDFPTG +         +++ 
Sbjct: 250 VGIATKIPPHNMREVVEGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVR 309

Query: 241 ESYRLGRGGFRVRARWCVEE---VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           ++Y  G+GG  +RA+  +E+    G G   +V+TE+PYQ  KS L+E+IA L+ A  +  
Sbjct: 310 QAYEEGKGGILMRAKIHIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTG 369

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DIRDES  D   V+    R  + DL++  +   + +++RF  NM  L  G  P  + L
Sbjct: 370 VSDIRDESDRDGVRVVVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALV-GATPLTLTL 428

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV- 416
              L+ +L+ R EV+ RR+   +    +R+ ++ G + A  ++D ++  IR         
Sbjct: 429 KNFLQHFLSFRCEVVERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAAL 488

Query: 417 ---MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                S F L+  Q + +L + LR L  LE  +++ E   L A+   +  LL    +   
Sbjct: 489 VVLRASPFGLSREQAEGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQDRILQ 548

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
            +  E  E+   F        RRT     +  +     + +I   P  VV S RG+I+  
Sbjct: 549 VVTSEAEELAAKFGTP-----RRTHII--TDGEVELRHEDVIPNAPSLVVYSRRGYIKRV 601

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
                   K   V  +    KE DSL   ++ +  D +L  +T+G+AY+L A ++  G  
Sbjct: 602 RPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTR 661

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANT 635
              G A+  ++  + +  I               +   +++++ KG        +  +  
Sbjct: 662 TAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSIN 721

Query: 636 RKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK 693
           R G   + V   + ++ V   +  D V +   N     F+I ++  M R   G +  +  
Sbjct: 722 RSGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITKLRRMGRAAVGNKSMTLS 781

Query: 694 DGGISDVICFKI 705
            G  +D++   I
Sbjct: 782 KG--TDIVAMAI 791



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 67/253 (26%)

Query: 518 EPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570
           E   V+++ +G I+              L A+  +EGDSL+       TD +L+ +++G 
Sbjct: 697 EQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGS 756

Query: 571 ----------KAYTLPAGNLLSGRGHGEAIQLLIDLN--------HNQDIVTA-----FV 607
                     +      GN       G  I  +  L         +++D ++        
Sbjct: 757 AQHFAITKLRRMGRAAVGNKSMTLSKGTDIVAMAILPAGIVAEGPNDEDYLSIEGSHDMD 816

Query: 608 YDSTC------------------KLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSE 647
           Y                       LL+V+ +G       SE    A T  G   L+++  
Sbjct: 817 YSEGKAAETPAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLG 876

Query: 648 EKMKLVV--------------KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           +++  V                  G  V +  +  +L+   +  +   SR  KG RL   
Sbjct: 877 DRLAAVQDESSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKV 936

Query: 693 KDGGISDVICFKI 705
           + G   +V+   +
Sbjct: 937 RQG--DEVVAATV 947


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/753 (32%), Positives = 402/753 (53%), Gaps = 26/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           + + ++   L E Y+ Y++S I  RAIPD+RDG KPV RRI++AM E+GL   A  KK A
Sbjct: 4   ILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKCA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD SVYD+LVRLAQPF  RYPL+ GQGNFG+ID D  AA RYTEA++
Sbjct: 64  RIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAKL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++AE +LQ +D++ V     +++   EP V PSK PNLL NG +GIAVGMATSIP HN+
Sbjct: 124 SELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           QE+  A   LI+NPE +I  LL  I GPDFPTG +IV   E + E Y  G+G   +R + 
Sbjct: 184 QEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNE-LTEVYATGKGRIVLRGKV 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE G+    +V+TEIPY V K+ LIE+IA         ++++IRDES ++   ++   
Sbjct: 243 HFEE-GKRFNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            ++ + ++++ +++  + ++T F + M V+  GR P++M L  +LK ++ HR +V+ +R+
Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVI-DGRRPKLMNLSQLLKAFIKHRFDVIRKRA 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDAILN 433
            + ++   RR  IL+G++ A   I  ++ I+R     +  M +     S+T  Q  AIL+
Sbjct: 361 EYELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIEALSITNEQAKAILD 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  +++ E   L+ + E +  +L+  ++ +N +  E+ E+K+ ++      
Sbjct: 421 MRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRDERVYNVMYQELEELKKKYADE---- 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHF 545
             R T  E      +   + +I  E + + ++ +G+         RS +     +     
Sbjct: 477 --RRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGART 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIV 603
            E D +     +    + L +++ GKAY L    + L+GR   G+ I+  ++L  ++ ++
Sbjct: 535 AEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVL 594

Query: 604 TAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660
           T   +D     L++V+  G        E    T +G   +  S  + +      +   D 
Sbjct: 595 TMISFDEWKGDLVLVTKSGRIKRTPLKEFENTTSRGIRAITFSDSDVVVSATLSSSESDQ 654

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N   + F +  + +M R   GV     ++      +     E    +    R +
Sbjct: 655 IIIATKNGMAIRFPLKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDENCEILTITVRGF 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +        +  RGGVG     G  ++G+   
Sbjct: 715 GKRTPVNDYRVQSRGGVGIKTMPGVEKAGQLCG 747



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 89/228 (39%), Gaps = 15/228 (6%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFK 546
           G+    +  +   +      +  E +   V+++  G I+              + A+ F 
Sbjct: 578 GKPIRAYLNLEEDESVLTMISFDEWKGDLVLVTKSGRIKRTPLKEFENTTSRGIRAITFS 637

Query: 547 EGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + D +  A  + + +D+I++ + +G A   P  ++         +  +     ++ +   
Sbjct: 638 DSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQMGRSAMGVIGIRLREKDEVVGMV 697

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-----KLVVKVTGDH 660
            V D  C++L ++ +G       ++    +R G     +   EK        +V      
Sbjct: 698 NVPDENCEILTITVRGFGKRTPVNDYRVQSRGGVGIKTMPGVEKAGQLCGIDIVADPKSD 757

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           V V+ +N + + F++  + ++SR  +GV++      G  +V  F + E
Sbjct: 758 VIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDL--SGDDEVSHFAVVE 803


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/774 (35%), Positives = 429/774 (55%), Gaps = 43/774 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        +   E++  +++L       YL YA+S +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL   A   KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR++ +A L+L  +D    DF   Y+   +EP + P++ P +L NG 
Sbjct: 121 RDGDGAAAMRYTEARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IP+HN++E+  A +AL+ NP + +   L  + GPDF TGG ++ S + I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
            +Y +GRG  +VRARW VEE+ RG W +V+ E+P+      ++E+I EL           
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 290 -------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                  + A  + LL+ +RDES  +  VR+V  P++  +D    + ++   + +ET  P
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P+   L  IL+EW+A+RR+ + RRS  R++ +D R+ IL+G     LN+
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I  IRN D P+P +++RF LTE Q D IL++RLR L +LE  +I  EL     E  +
Sbjct: 421 DEVIETIRNSDDPRPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAE 480

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +  LL   K    +I  EI       + +   G  R T  +  +   A   +  +  E +
Sbjct: 481 LQKLLADEKAMTRRIISEIE------ADAKQFGDDRRTLIQAEQRAVA---EVKVVDEAV 531

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TV++S +GW+R+ K H + LSAL FK GD+L       + D +++L +DG+AY++   +L
Sbjct: 532 TVIVSQKGWLRTQKGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSIDVADL 591

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G+ +   I+L      +       T  LL+ +++G  F+    + ++  R GKT
Sbjct: 592 PGGRGDGQPVTSFIELAPGTQALHYLAGARTTALLLWTAQGFGFVTRIGDALSRQRAGKT 651

Query: 641 FLKVSSEE--KMKLVVKVT-GD----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
           F+ +   +  +  LV+ +  GD     +A++    +LLI++  ++  +SR G+GV L   
Sbjct: 652 FMTLEDGDVPQRPLVLGIDVGDSPTGRLALLSTGGRLLIYAAAEVKALSRGGRGVTLMEQ 711

Query: 693 KDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGSLV 740
                   I   + E     +   GR        L G     +LGKR   G  +
Sbjct: 712 DAKEALLSIAHLVGEREALLVSGKGRGGTERSTSLSGTQQALYLGKRAKRGRKL 765


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 387/744 (52%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 PIASELLRDIDKNTVEFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  ID+P+ ++ +L+E I GPDFPTGGI ++  + I ++Y  G+G   VR +  
Sbjct: 188 EVIDAVIKRIDSPDCTVTELMEVIKGPDFPTGGI-IQGVDGIRKAYETGKGKVIVRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VE +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 VETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++AH++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLTAILDAYIAHQKEVVTNRSI 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+ +     K  ++S+F  TE Q +AI++L
Sbjct: 366 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLISKFEFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L    ++++S+LN+ K+    I   ++++K+ ++       
Sbjct: 426 QLYRLTNTDITALKEEAEELSKNIQELESILNNDKKLLKVITSSLKKLKKTYADG----- 480

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D L
Sbjct: 481 -RRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +L+ +  G     P   L     +  G+    +I ++ ++ IV A    
Sbjct: 540 LHQFEMNTTDVLLMFTNKGSYIYCPVHQLPDIRWKDMGQHFTNMISIDRDETIVKAIPIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L V  ++++  V    G+  + + 
Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNVKGDDELTDVHVTNGESQLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+G    V    + E  + + +  R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKEGDFV-VSGQILHEADSLVLATQRGAVKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   ++
Sbjct: 719 SLSEFDKTSRAKRGVIMLRELKKN 742


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 214/712 (30%), Positives = 349/712 (49%), Gaps = 36/712 (5%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 3   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 62

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVG
Sbjct: 63  AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 122

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN+ E+ EA    +DN E   E     ++E + GPDFPT G+IV   + I ++
Sbjct: 123 MATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIV-GTQGIADA 181

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I 
Sbjct: 182 YKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIE 241

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD ++
Sbjct: 242 DQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLI 300

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMV 418
           + ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++
Sbjct: 301 RHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLI 360

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E
Sbjct: 361 ELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDE 420

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI--------TVVISNRGWI 530
           + E+ E    +     RRT       AD     + +I +E +                  
Sbjct: 421 LAEIVEKHGDA-----RRTRIV---AADGDVSDEDLIAREDVXXXXXXXXXXXXXXXXLY 472

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGE 588
           RS K     +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+
Sbjct: 473 RSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQ 532

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+     + I        Y+    L++ +  G     + ++  +N   G   + + 
Sbjct: 533 HVANLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLR 592

Query: 646 SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVI 701
             +++   V  +  D + +V  N + + FS     +  M R   GV+   +       + 
Sbjct: 593 DNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYL-LS 651

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 652 LNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 703



 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 32/97 (32%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 628 LRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 687

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +  ++       +V A + D   +L  ++S G     
Sbjct: 688 VLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRT 724


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 403/760 (53%), Gaps = 32/760 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ M E+G+ + +  +K
Sbjct: 69  EGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQHRK 128

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGDSAAA RYTEA
Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTEA 188

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L G+ +D VDF D Y+  + EPVV PS+FPNLL +G +GIAVGMAT IP H
Sbjct: 189 RMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEIPPH 248

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A +A   N EI+ E+L+ +I GPDFPTG  I+   + I++ Y  G+G   VR+
Sbjct: 249 NLSETINATIAFARNNEITTEELMIHIKGPDFPTGATIL-GVKGILDMYETGKGKIPVRS 307

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EE   G   I+VTEIPY V+K+ +IEKI EL   K +  + ++RDES  +   ++ 
Sbjct: 308 KTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRIVI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P +L+  +F  S ++T    N+  L  G  P+++ L  IL  +L H+ EV+ R
Sbjct: 368 DVKKGFNPHVLLNKLFQKSYLQTNVNANLVALVNGE-PKLLNLKQILNIYLNHQIEVVTR 426

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F ++    ++ IL GL IA  NIDE++ II+   N+   +  + +RF+LTE Q  AI
Sbjct: 427 RLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTRFNLTEKQTKAI 486

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++ LR L  L   ++  E+D L  E   I S+L S ++  + I  E+  +KE +     
Sbjct: 487 LDMSLRRLTGLNIEKMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGDK-- 544

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543
              RRT   E +    +   + +I    I +  S +G+++ +K           + ++ +
Sbjct: 545 ---RRTEIDESAI--SSISDEDLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNTM 599

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL---NH 598
                D +   L   T   ++L +  G+ Y + A  +  G  +  G     +I       
Sbjct: 600 KTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEKE 659

Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + +V+      Y     L+ V+  G     + S+  +    GK   K+   + +     
Sbjct: 660 GEKVVSLLAVETYSDEQYLVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAFI 719

Query: 656 VTGDHVAVVGENRK-LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
           V   +  ++  N K ++ FS + +  + R   GVR  +  +G    +      +G   + 
Sbjct: 720 VEDGNEILIASNGKNVVKFSSNDLRPLGRSSFGVRGITLAEGK-KVLTASSDKDGDFILS 778

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + + +        L KRGG G        ++G  + +
Sbjct: 779 IGTKGFGKLTPSEEFRLIKRGGKGVTAINA-DKAGDLIFA 817



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 13/213 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLL 566
                E   V ++  G I+  +             A   +E D L  A      + IL+ 
Sbjct: 670 ETYSDEQYLVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAFIVEDGNEILIA 729

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           S         + +L         ++  I L   + ++TA        +L + +KG   + 
Sbjct: 730 SNGKNVVKFSSNDLRPLGRSSFGVRG-ITLAEGKKVLTASSDKDGDFILSIGTKGFGKLT 788

Query: 627 EESEIIANTRKGK--TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
              E     R GK  T +       +     V   D   ++      +   I QI   SR
Sbjct: 789 PSEEFRLIKRGGKGVTAINADKAGDLIFAKFVKPNDEALIITAAGTTIRILISQISVTSR 848

Query: 684 G-KGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             KGV++ + +D    ++I  +I +    ++ A
Sbjct: 849 ATKGVKIINLRDN--DEIIAVEIVKNEQELEKA 879


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 400/762 (52%), Gaps = 30/762 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +   ++   L   Y+ Y++S I  RAIPDLRDG KPV RRI+  MSE+GL     F
Sbjct: 1   MPEEIIHKNIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD ++YD+LVR+AQPF  RYPL+ GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM  +AE +LQ +D++ V     ++   SEP V P+K PNLL NGTSGIAVGM TSIP
Sbjct: 121 EARMETLAEELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI +A   LI +PE S+  LL +I GPDFPTGG+I+++  SI   Y+ G+G   V
Sbjct: 181 PHNLVEIIDAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDA-ASIPSIYQEGKGRITV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA   +EE G GS  IVV+EIPY   K+ +IE+I       R   + +IRDES +    V
Sbjct: 240 RAIAEIEESG-GSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRV 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP++++  +F  + ++T F +NM V+   + P+VM L  IL+ +L+HR  V+
Sbjct: 299 VIELKRGADPNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             ++ + ++   +R  I++GL  A  +ID ++ IIR   N ++    ++    +T+ Q  
Sbjct: 359 RSKTEYDLEQASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLMETLEVTQEQSS 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++R+  L  +E  ++ +E  +L+A+  +   +L S ++ +  I  E+ E+K  +  +
Sbjct: 419 AILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILASDEKVYGIILDELNEIKAKYGDA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--- 546
                RRT     +  D     + +I  E I ++++ +G+I+S    S        K   
Sbjct: 479 -----RRTRIDLGNGTDFNI--EDVIPDEDIVLMVTKKGYIKSTPLESYRKQGRGGKGVI 531

Query: 547 -----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                + D +   L      + +++++ GKAY L    +   S    G+ +   I ++ +
Sbjct: 532 GVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKLLANYIKIDPD 591

Query: 600 QDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++              +L++ +  G     E    +     G   + ++  +++     
Sbjct: 592 ENVQAVLSTRKEEVQGKQLVITTRSGKIKKTEFEAFLNVRISGIKAISLNEGDRVIDASL 651

Query: 656 V--TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTW 711
                D + +  +N  ++ F +DQ+  M R   GV      K+  +         +    
Sbjct: 652 TSREDDTIIISTKNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASEDTRFL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + +  +   +           RGG+G     G  + GK + +
Sbjct: 712 LTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLEKIGKVIGT 753



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 522 VVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA-LHAHTTDRILLLSTDGKAYT 574
           V+ +  G I+       L      + A+   EGD +  A L +   D I++ + +G    
Sbjct: 611 VITTRSGKIKKTEFEAFLNVRISGIKAISLNEGDRVIDASLTSREDDTIIISTKNGMVIR 670

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEII 632
            P   + S       +   I L  N ++V A     + T  LL  + KG       SE  
Sbjct: 671 FPLDQVRSMGRSAAGVMG-IRLKKNDEVVGANIVASEDTRFLLTATEKGGGKRTCLSEYR 729

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           +  R G     +   EK+  V+      + D V +  +    +   + Q+    R  KGV
Sbjct: 730 SQNRGGLGVKNIYGLEKIGKVIGTLVVNSDDEVILATKLGMSIRIPVSQVRPTGRVTKGV 789

Query: 688 RLQSYKDGGISDVICFKIC 706
           R+   KD  I+  +   + 
Sbjct: 790 RIVDLKDNDIAASMAVVVD 808


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/782 (34%), Positives = 413/782 (52%), Gaps = 57/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M      + +   +    ++ L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDQPTLDFSAPADHG-DSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 59

Query: 61  MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +    +       KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 60  MDRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLID 119

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D   VDF   Y+    EP   P++ P
Sbjct: 120 GQGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLP 179

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++E+ +A +AL+  P++S E+L   + GPD+P GG I+
Sbjct: 180 FALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQII 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            +   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K
Sbjct: 240 STDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 299

Query: 294 RIPLLE------------------DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                +                   +RDES++D  VR+V+ PK   +    L+ ++   +
Sbjct: 300 VKTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHT 359

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+  R+  + RRS  R+  +  R+ IL+G 
Sbjct: 360 SLETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGR 419

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            +  LNIDE+IAIIR  D+PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 420 QLVLLNIDEVIAIIRQADEPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +A EI    ++F  +      R T  +  +   A   + 
Sbjct: 480 LRDEQGKLEDILANPASLRRLMAKEIEADAKLFGDA------RRTLIQAEKKAVA---EV 530

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  +  +  FK GD L       T D +++  ++G+ Y
Sbjct: 531 KVLDEPVTVVVSEKGWVRARQGHGHEAGSFAFKSGDGLYGTFECRTVDTLIVFGSNGRVY 590

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++   +L  GRG G+ I  LI+L      V  F   +   LL+  S G  F+     + A
Sbjct: 591 SVAVSSLPGGRGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFLSTVEHMTA 650

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----------GDHVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++                   HV       ++L F I ++  M +
Sbjct: 651 RNRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPATHVCCASVGGRVLTFEIAELKLMEK 710

Query: 684 -GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGV 736
            G+G+ L   +    ++    +        +   GR     E  L           RG  
Sbjct: 711 GGRGLMLIDLEPKDQLAGAAAYTRSVRFVGV---GRGGKPREEQLEIRSLNNARAARGRK 767

Query: 737 GS 738
           G 
Sbjct: 768 GK 769


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 387/743 (52%), Gaps = 23/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +++  V+F   +++  SEP V P+ +PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSALSSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI +  +  +D P+ SI+ L+E+I GPDFPTGGI ++  + I ++Y  GRG   VR 
Sbjct: 185 HLNEIIDGVILRMDKPDCSIDDLMEHIKGPDFPTGGI-IQGVDGIKKAYETGRGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E++  G   IV+TEIPY+V K+ L++KI E  + +++  + ++RDE+      ++ 
Sbjct: 244 KAEFEDLRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  DP+ ++  ++  SD++  +  NM  +     P++M L  +L  ++ HR+EV+ R
Sbjct: 304 ELKKDADPEGVLHYLYKNSDLQIPYNFNMVAIHNRH-PKLMGLRELLDAYIGHRKEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +Q  + R  I++GL+ A   +DE+I  IR        K  ++++F  TE Q +AI
Sbjct: 363 RSQFELQKAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAKFEFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E ++L     ++ S+L S K+ ++ I  E+R+VK+ F+    
Sbjct: 423 VSLQLYRLTNTDITALRAEAEDLAKLIGELKSILESEKKLFSVIKKELRDVKKRFADE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  E    +     + ++  E + V ++  G+++     S    +      K+ 
Sbjct: 481 ----RRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYVKRTSQRSFAASNGQDFGMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L   L  +TTD +L+ +  G     P   L     +  G+ I  +I ++ N+ IV A 
Sbjct: 537 DRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRWKDLGQHIANIIPIDRNESIVRAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +++   LL ++  G     E     A    K    + V   +++  V    G   +
Sbjct: 597 PVKDFETEEYLLFMTKNGMVKKTELKAYKAQRYSKPLVAVNVKGTDEVLDVYLTDGTKEI 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +       L F  +++  +  R  GV+  + KDG  ++     +  +  + +    R  
Sbjct: 657 FLATHQGFGLWFHEEEVSIVGARAAGVKGINLKDGDFVAGAQLIEDQKEQSVVIVTQRGS 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G ++ +
Sbjct: 717 IKKMKLSEFERTSRAKRGVVMLR 739



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 21/208 (10%)

Query: 490 TDLGRRRTTFCEVSRADKAT--LQQAMIEKEPITVVISNRGWIRS-------LKSHSVDL 540
            DLG+       + R +     +     E E   + ++  G ++         + +S  L
Sbjct: 574 KDLGQHIANIIPIDRNESIVRAIPVKDFETEEYLLFMTKNGMVKKTELKAYKAQRYSKPL 633

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNH 598
            A++ K  D +        T  I L +  G          +++  R  G      I+L  
Sbjct: 634 VAVNVKGTDEVLDVYLTDGTKEIFLATHQGFGLWFHEEEVSIVGARAAGVKG---INLKD 690

Query: 599 NQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKL 652
              +  A + +      +++V+ +G+   ++ SE    +R  +  + +        ++  
Sbjct: 691 GDFVAGAQLIEDQKEQSVVIVTQRGSIKKMKLSEFERTSRAKRGVVMLRELKSNPHRIVG 750

Query: 653 VVKVTGDHVAVV-GENRKLLIFSIDQIP 679
            V V   H   +  E   +   ++  I 
Sbjct: 751 CVIVRSKHELYIETEKGHIEAVNVSSIR 778


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/747 (36%), Positives = 413/747 (55%), Gaps = 35/747 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL   A   KSAR+V
Sbjct: 20  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVG+AT IPSHN++E+
Sbjct: 140 AKLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+A+I +P+I+  +L++ + GPDFP GG I+ S   I ++Y  GRG  +VRARW +E
Sbjct: 200 AAAAVAMIRHPKITHAELMQLVPGPDFPGGGQIISSEAEISQAYETGRGSLKVRARWKIE 259

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRIPLLEDI 301
           ++ RG W +V+TE+P      +++E+I E                        + LL+ +
Sbjct: 260 DLARGQWQLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKSLTPEQLQTKQTLLGLLDAV 319

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +D  VR+V  PK+  +D    + ++   + +E+   LN+ ++     P+   +  
Sbjct: 320 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNATLNLVMVGADGRPRQKGIGE 379

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L EW+  R   + RRS  R+  ++ R+ IL+G +I +LNIDE+I IIR  ++PK  ++ 
Sbjct: 380 MLHEWIGFRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNIDEVIRIIRESEEPKAALIE 439

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q + IL +RLR L +LE  +I+ EL  L  EK K++ LL S       +  EI
Sbjct: 440 AFKLSDRQAEDILEIRLRQLARLEAIKIEKELSELRDEKAKLEELLGSEPAMKRLLIKEI 499

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
                  + +   G  R T  +  +       +A +  EP+TVV+S +GW+R+LK H +D
Sbjct: 500 E------ADAKQYGDDRRTLIQQEKRA---TFEARVVDEPVTVVVSQKGWVRALKGHGLD 550

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            +   FK GD L  A    T D ++   + G+ Y++    L  GRG G  +  LI+L   
Sbjct: 551 PAGFTFKAGDGLYAAFQCRTPDMLIAWGSKGRVYSVAVSQLPGGRGDGVPVTSLIELESG 610

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++  +   +   LL+ SS G  FI +  ++++  + GK F+ +         + +  D
Sbjct: 611 THLMHYYAASAEQALLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPD 670

Query: 660 --HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              VA +    +LL+F +D++  +   G+GV L +     +          G+       
Sbjct: 671 ATQVACLSGGGRLLVFGLDEMKTLSGGGRGVILMALDPNEVLKQALAISNAGVVLQGVYR 730

Query: 717 RS---YNRSENDLLGWLGKRGGVGSLV 740
                   S   L   +GKR   G + 
Sbjct: 731 NKPMEEELSGKALEPNVGKRARKGRVP 757


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 268/782 (34%), Positives = 412/782 (52%), Gaps = 57/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M      + +   +    ++ L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDQPTLDFSAPADHG-DSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 59

Query: 61  MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +    +       KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 60  MDRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLID 119

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D   VDF   Y+    EP   P++ P
Sbjct: 120 GQGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLP 179

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++E+ +A +AL+  P++S E+L   + GPD+P GG I+
Sbjct: 180 FALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQII 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
            +   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL   K
Sbjct: 240 STDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 299

Query: 294 RIPLLE------------------DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                +                   +RDES++D  VR+V+ PK   +    L+ ++   +
Sbjct: 300 VKTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHT 359

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+  R+  + RRS  R+  +  R+ IL+G 
Sbjct: 360 SLETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGR 419

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            +  LNIDE+IAIIR  D+PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 420 QLVLLNIDEVIAIIRQADEPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +  EI    ++F  +      R T  +  +   A   + 
Sbjct: 480 LRDEQGKLEDILANPASLRRLMVKEIEADAKLFGDA------RRTLIQAEKKAVA---EV 530

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  +  +  FK GD L       T D +++  ++G+ Y
Sbjct: 531 KVLDEPVTVVVSEKGWVRARQGHGHEAGSFAFKSGDGLYGTFECRTVDTLIVFGSNGRVY 590

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++   +L  GRG G+ I  LI+L      V  F   +   LL+  S G  F+     + A
Sbjct: 591 SVAVSSLPGGRGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFLSTVEHMTA 650

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----------GDHVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++                   HV       ++L F I ++  M +
Sbjct: 651 RNRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPATHVCCASVGGRVLTFEIAELKLMEK 710

Query: 684 -GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGV 736
            G+G+ L   +    ++    +        +   GR     E  L           RG  
Sbjct: 711 GGRGLMLIDLEPKDQLAGAAAYTRSVRFVGV---GRGGKPREEQLEIRSLNNARAARGRK 767

Query: 737 GS 738
           G 
Sbjct: 768 GK 769


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/764 (32%), Positives = 413/764 (54%), Gaps = 31/764 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     +  ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ + 
Sbjct: 6   NDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMT 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +    KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  A
Sbjct: 66  YEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA+M+++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVGM
Sbjct: 126 AMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +  +A+  NPEI+  +L++ I GPDFPTG +I      ++++Y  G 
Sbjct: 186 ATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAG-NGLIKAYETGN 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   +R++  +EE       I+V+EIPYQ+ K++L+E+IAEL+  K I  + D+RDES  
Sbjct: 245 GAITIRSKIDIEE-NNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNM 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R    ++++  ++ L+ ++T F LN+  L     P+VM L  ILK ++ H
Sbjct: 304 EGVRVVLELKRDAQENVILNKLYKLTPLQTNFSLNILAL-YKNQPRVMGLKQILKYFIEH 362

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           + +++ +RS F ++    R+ IL+GL IA  NIDE+IAII+           ++++F+L 
Sbjct: 363 QIDIIIKRSQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINKFNLV 422

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q  AIL +RL+ L  LE  +I +E+ ++     +++ ++N+ ++Q + +  E+ E+K+
Sbjct: 423 GEQARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSEKQIDIMITELTEIKK 482

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            +        RR+   +    +     + +I +E   ++++  G+++ +   +  L    
Sbjct: 483 KYGDE-----RRSQIIKEELTE--IDPEELIRREDTLIMLTQDGYVKRVSDDTFKLQNRG 535

Query: 545 FKE-------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
            K         DSLK  + A++ D +L+ S  GK Y L A N+   S    G  I  LI 
Sbjct: 536 GKGIIGLANIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIA 595

Query: 596 LNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           ++  + I T    D        L  V+ KG     + SE     + GK  +++   +++ 
Sbjct: 596 IDKTESIQTIIAVDESISTEDNLFFVTKKGLIKKTKISEFNQIRQTGKVAIELKDNDELV 655

Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
            V+   G    ++G N  K++ F+  +I  M+R   GV+  +  D     +         
Sbjct: 656 SVIITKGYDDVIIGNNIGKVIRFNEKEIRPMTRQSVGVKGIA-NDATGETIGVSSGRSAK 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFL 751
             +      Y +        L  R   G        ++G  KF+
Sbjct: 715 YVLSVTENGYAKKTIIKDYRLTGRNTKGVKSINLTDKTGYLKFV 758


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/784 (32%), Positives = 405/784 (51%), Gaps = 51/784 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLNTGQVVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +    +L+ + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P+++ EKLLE I GPDFPTGG IV S   I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +E++     GR    I+VTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIILRGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      V+    R  +P+ ++  ++  + ++T F   +  L     P+ + L  +L+E
Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALV-EGQPRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R + L RR S+ +   + R  I+ GLL A   +DE+I I+R        K V+  +
Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             LTE Q DAIL + LR L  LE+  ++ E   L  +   +  LL   ++    +  ++R
Sbjct: 424 LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRRLLEDRRELLKSLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFC----------------EVSRADKATLQQAMIEKEPITVVI 524
            +K  +        RRT                        +K+ +       EP  +  
Sbjct: 484 TLKRKYGD-----TRRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISPEEQPPEPAILEF 538

Query: 525 SNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581
           + RG++R L   S    A     + D L      +T   +L+L+T GK Y +  G++  +
Sbjct: 539 TQRGYVRRLAPGSKKAKAETITGDNDFLIQTEITNTHQDLLILNTSGKVYPVKVGDISPI 598

Query: 582 SGRGH-GEAIQLLID---LNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIAN 634
           S R   G  +  L+      + + I+  F+      T  +++V+ +G    +   E+   
Sbjct: 599 SARSPRGMPLITLLTNTAQGNVEGILGRFILPETKDTHDMVIVTKQGRIKRLSLEELTNV 658

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSI--DQIPEMSRGKGVRLQS 691
           +++G T LK+  ++++        +H  ++     + L F+I  DQ+P M R   + LQS
Sbjct: 659 SKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCLRFAINDDQLPVMGRAA-MGLQS 717

Query: 692 ---YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               K   I   +  +  E L  +   G +   S   L    G RG +G  + K   ++ 
Sbjct: 718 FRILKSQQIISCVTIEQEENLLLVTQEGYAKRISSGSL--RAGNRGDLGIQMLKFHNKTD 775

Query: 749 KFLS 752
             ++
Sbjct: 776 NLVA 779



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 15/209 (7%)

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
             +     V+++ +G I+ L            ++ L  K+ D L  A   +    ++L S
Sbjct: 631 ETKDTHDMVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGS 690

Query: 568 TDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           + G+   + +    L         +Q    L   Q I++    +    LL+V+ +G A  
Sbjct: 691 SGGRCLRFAINDDQLPVMGRAAMGLQSFRILKS-QQIISCVTIEQEENLLLVTQEGYAKR 749

Query: 626 VEESEIIANTRK--GKTFLKVSSE-EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM 681
           +    + A  R   G   LK  ++ + +  + +  T   V +V    +++  S+  IP +
Sbjct: 750 ISSGSLRAGNRGDLGIQMLKFHNKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPIL 809

Query: 682 SR-GKG-VRLQSYKDGGISDVICFKICEG 708
            R  +G       +D  I+ V+     E 
Sbjct: 810 DRDARGENIFPMTRDEVITSVVVVLETES 838


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/755 (32%), Positives = 395/755 (52%), Gaps = 31/755 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+VG
Sbjct: 5   DLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ +++
Sbjct: 65  DVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELS 124

Query: 141 EL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
              +L+ V E+ VDF   ++   +EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 125 HTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEV 184

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  LALID+P++S E+LL +I GPDFPTGG I+++ + I  +Y  GRG   +R     E
Sbjct: 185 VDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDT-QGIRAAYLTGRGSITLRGVARFE 243

Query: 260 EVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           E+  G        +V++E PYQV K+  IEK+AEL    RI  + D+RDES      V+ 
Sbjct: 244 EIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  +P  +++ ++ L+ +++ F   +  L  G  P+ + L  IL+ +L  R   L R
Sbjct: 304 ELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGE-PRQLSLKEILQHFLQFREATLNR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
                +Q + R+ E + G+L+A  +++ +I ++R        K  + +R   T  Q + I
Sbjct: 363 MFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAETI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L + LR L  LE  ++  E   L    E++  LL+  ++  N +  E+R +K+ F     
Sbjct: 423 LAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDP-- 480

Query: 492 LGRRRTTFCEVSRADKA---TLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHFKE 547
              RRT     S  +            E+    +  + +G++R L   S    S    +E
Sbjct: 481 ---RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQRE 537

Query: 548 -GDSLKIALHAHTT-DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            G+ + + L   T    IL+L+  GKA+TLP   +    G    + L+  L + + IV  
Sbjct: 538 LGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVAT 597

Query: 606 FVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660
           F  D       L+V+S +G    +  +E++  T++G T LK+   +++        DH  
Sbjct: 598 FTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQG 657

Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR- 717
             V +     ++L   + QIP M R   +   + + G    ++   +      +  A R 
Sbjct: 658 YSVVLATSGGRVLRLDVQQIPLMGRAA-MGSPALRLGRTERIVGMALVPSQGILVLASRL 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +  +     + +RG VG+       R    + 
Sbjct: 717 GYLKRLSLEEIPILERGQVGAPAFHFSDRGDVLVG 751


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 401/759 (52%), Gaps = 34/759 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     FKK 
Sbjct: 82  RVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKC 141

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG++D D  AA RYTE R
Sbjct: 142 ARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECR 201

Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  + E + L  +++D VDF   ++    EP +FP++ P LL NG+SGIAVGMAT IP H
Sbjct: 202 LDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPH 261

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +   ALI NPE ++++LLEY+ GPDFPTGGII+   + I+++YR G+G   VR 
Sbjct: 262 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIM-GNQGILDAYRSGQGRIVVRG 320

Query: 255 RWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  VE  +       +++ EIPYQ  K+ L+EKIAEL+  K +  + DIRDES      +
Sbjct: 321 KTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRI 380

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP +++ +++ L+ +++ F  NM  +  G+ P+ M L  +L+ +L  R  V+
Sbjct: 381 VIELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQ-PKQMGLKELLQAFLDFRCSVV 439

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ F++    +R  I++G++    N+D ++ IIR           + + FSL+E Q +
Sbjct: 440 ERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAE 499

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++ LR L  LE  +   E  +L+ +  K++ LL+S       I  E  E+K  FS  
Sbjct: 500 AILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNP 559

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLS 541
                 R +  E S + +      +I  E + + IS +G+++ +K          ++  S
Sbjct: 560 ------RRSMLEDSDSGQLEDI-DVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKS 612

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
               ++ D++   +  H  DR+L  S  G  Y+ PA  +        G  +   + L+  
Sbjct: 613 VGKLRDSDAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDG 672

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I +      +     LL+++  G    V  +   A    G   +++   +++K V   
Sbjct: 673 ERITSIIPVSEFVEDQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCC 732

Query: 657 T-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLTW 711
           T GD VA+  +N  +++ S + I  + R  +G      ++G      D+I   + + L  
Sbjct: 733 TNGDLVAMASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEV 792

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                 + N+     L ++ + G  G  VP    +  + 
Sbjct: 793 ASKDSENNNKGTGPWLLFVSESGH-GKRVPLSSFKQSRL 830



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 43/233 (18%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G+I+ +  +S        + A+    GD LK     
Sbjct: 673 ERITSIIPVSEFVEDQFLLMLTVNGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCC 732

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVTAFVYDSTCK-- 613
              D + + S +G        N+   R  G   +  + + L     I +  +  ++ +  
Sbjct: 733 TNGDLVAMASQNGMVILTSCENI---RALGRNTRGGVAMRLREGDKIASMDIIPASLQKD 789

Query: 614 ------------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLV 653
                             LL VS  G+   V  S    +   R G    K   E+ +  V
Sbjct: 790 LEVASKDSENNNKGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAV 849

Query: 654 VKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             V         + + V +V ++  +    +  I   SR  +GV L   +  G
Sbjct: 850 FAVGFSLTEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAG 902


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/794 (31%), Positives = 407/794 (51%), Gaps = 64/794 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + +  + +   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  D+   +
Sbjct: 4   VAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  RY LI GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A  +L  +D++ V F   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    LA ID+  I+++KL+E+I GPDFPT G+ +  +  I ++Y+ G+G   +
Sbjct: 184 PHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGL-INGKRGIEKAYKTGKGKIYI 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA+  +E +       I++ E+PYQV K+R+I+ IA L+  K+I  +  +RDES ++   
Sbjct: 243 RAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +    ++++  ++ L+ +E  F +NM  L     P+VM L  IL  ++ HRR++
Sbjct: 303 IVIEIKKETKAEIILNQLYSLTQLEISFGINMVALI-HGQPKVMTLKEILNAFINHRRKI 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------- 410
           + RRS F +  I +++ IL+GL+I+  NID II +I+                       
Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421

Query: 411 ----------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                            K +P+   +F LT  Q+ AIL LRL+ L  LE  ++ SE   L
Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                 ++++L +       +  E+ ++++ F      G +R T   V+ +D       +
Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNF------GDKRRTKINVNYSD--INTSDL 533

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I KE + + +S  G+++          K       A+  KE D ++  L A+T D IL  
Sbjct: 534 INKENVVITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCF 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           S+ G  Y +    L   S    G  I  L+ L+ N+ I        Y  +  + + +SKG
Sbjct: 594 SSKGILYWMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKG 653

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE 680
                   E      KG   + + +++++  V    G++ + +     K + FS   + +
Sbjct: 654 MVKKTSLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRK 713

Query: 681 MSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             R   GV+    K       +      G   +      Y +        +  R   G++
Sbjct: 714 TGRTAIGVQGIKIKKSDKVVSLVVPKKHG-NILLITEHGYGKRTEIHEFPIKSRATQGTI 772

Query: 740 VPKGFPRSGKFLSS 753
             K   ++G  + +
Sbjct: 773 AMKITKKNGIVIGT 786



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
           +    A L  +  +      + +++G ++        K  +  + A++ K  D L     
Sbjct: 628 NERITAILPISEYKDSINIFMATSKGMVKKTSLYEFKKPRTKGIIAINLKADDELIGVSL 687

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
            +  + I+L +  GKA       L+   G        I +  +  +V+  V      +L+
Sbjct: 688 TNGNNTIMLFTAQGKAVHFSEI-LVRKTGRTAIGVQGIKIKKSDKVVSLVVPKKHGNILL 746

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLI 672
           ++  G     E  E    +R   G   +K++ +  + +  +  V  D + ++     L+ 
Sbjct: 747 ITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVR 806

Query: 673 FSIDQIPEMSR-GKGVRLQS 691
             + +I  + R  +GV +  
Sbjct: 807 TRVLEIGILGRNTQGVIIIR 826


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/750 (33%), Positives = 406/750 (54%), Gaps = 31/750 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+  +
Sbjct: 89  KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 148

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 149 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 208

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 209 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 268

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G   +R
Sbjct: 269 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 327

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ +   ++
Sbjct: 328 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 387

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++++P +L+  ++  ++++  + +N   L  G  P+V+ L   L+ +L H+ EV+ 
Sbjct: 388 IDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVVT 446

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F +     R+ IL+GL IA  NIDE+IAII+      + +  +  RF+LTE Q  A
Sbjct: 447 RRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTKA 506

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++   
Sbjct: 507 IVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND-- 564

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               +R T          T  + +I +  I +  S +G+++          +   V +  
Sbjct: 565 ----KRRTQINYEIQGTITD-EDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGT 619

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID---LN 597
           +   + D +   L   T   +LL S   + Y + A  +   S +  G A   +I    + 
Sbjct: 620 MKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVK 679

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + IV+      YD    L   +  G       +E       GK    +   +++   +
Sbjct: 680 EGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERINANGKYAFNLREGDELIRAM 739

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +T +  + +  +  +++ F       +SR   GV+  +  D   +        EG   +
Sbjct: 740 IITDEDLILLANDEERIVKFQAIDFRPISRTATGVKGITL-DSHQTVSSTSTSQEGELIL 798

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               + + +  +  L  L KRGG G     
Sbjct: 799 TIGKKGFGKLTHHSLFRLIKRGGKGVKGIN 828



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 9/207 (4%)

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++  + +   A EI E+         +    +   +      + L     +++      +
Sbjct: 644 SNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHYLFTAT 703

Query: 526 NRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             G I+  +             A + +EGD L  A+     D ILL + + +     A +
Sbjct: 704 KNGIIKKTRLTEYERINANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAID 763

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                     ++  I L+ +Q + +         +L +  KG   +   S      R GK
Sbjct: 764 FRPISRTATGVKG-ITLDSHQTVSSTSTSQEGELILTIGKKGFGKLTHHSLFRLIKRGGK 822

Query: 640 TF--LKVSSEEKMKLVVKVTGDHVAVV 664
               +       +     V      ++
Sbjct: 823 GVKGINSKLAGDIVFARFVNPQDELLL 849


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 214/743 (28%), Positives = 386/743 (51%), Gaps = 23/743 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  +   F+K+A+
Sbjct: 8   HDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR+ 
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLA 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 AIASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  ID+P  S++ L+E++ GPDFPTGGI ++ +E I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIDSPNCSVDDLMEFVKGPDFPTGGI-IQGKEGIKKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I +++  + ++RDE+      ++    
Sbjct: 247 IETIRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAQGILNFLYKNTDLQIPYNFNMVAIHNR-RPMLMNLTSILDAYIGHQKEVITNRSQ 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + ++    R  I++GL+ A   +DE+IA IR+ +     K  ++ +F+ TE Q +AI++L
Sbjct: 366 YELKKAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEKFAFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   ++ E   L  + ++++ +L++ K+    I   +++VK+ ++       
Sbjct: 426 QLYRLTNTDITALQEEAKELDQKIKELEEILSNDKKLLKVIKDSLKKVKKTYA------S 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
           +R +  E    +     + M+  E + V ++  G+I+     S    +      K+ D L
Sbjct: 480 QRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQRSFAASNGQDFGMKDTDRL 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
              L  +TTD +LL +  G     P   L     +  G+ I  +I ++ ++ IV A    
Sbjct: 540 LCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDLGQHITNIISIDSDESIVKAIPVR 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664
            +  +  LL  +  G A   +  +  A    K    L +  ++++  V    G   + + 
Sbjct: 600 EFTESEYLLFFTKNGMAKRTQLMQYKAQRYSKALVALNLKGDDEVVDVHVTDGTKDLFIA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
             +   L F+ D++  +  R  GV+  + KDG         + E    +    R   +  
Sbjct: 660 THSGYGLWFTEDEVSVVGARAAGVKGVNLKDGDFV-ASGQVLEEKDVLVLVTQRGSIKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPR 746
           N        R   G L+ +   +
Sbjct: 719 NRSEFEKTSRAKRGVLMLRELKK 741


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 231/752 (30%), Positives = 399/752 (53%), Gaps = 25/752 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
               +   L++ YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSAR
Sbjct: 3   INRPIEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVGEV+GK HPHGD ++YD+LVRLAQ +  RY L+ GQGNFG++D D  AA RYTEAR++
Sbjct: 63  IVGEVMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLS 122

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++E +L+ +D++ ++  D ++    EP+V PSKFPNLLANG++GIAVGM T+IP HN+ 
Sbjct: 123 KISEELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNIS 182

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  LALI NP+ISIE+L+E+I GPDFPTGG I+  R  I E Y  G+G F +R +  
Sbjct: 183 ELVDGFLALIKNPQISIEELIEFIPGPDFPTGGEII-GRAGIREMYTTGKGSFTIRGKLH 241

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           VEE  +    IV+TEIPY V K+ LI+KI E      +  ++DIRDES ++   ++    
Sbjct: 242 VEE-DKKKKKIVITEIPYNVSKADLIKKIVEYAENSSLQ-IKDIRDESDKEGLRIVIEIP 299

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            +++ D+++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ +R+ 
Sbjct: 300 NNVNEDIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQ 359

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNL 434
           F  +   ++  IL+GL+ A  +ID II++IRN +        ++  F  TE Q  AI++L
Sbjct: 360 FFYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELMEMFDFTETQAKAIVDL 419

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L KLE  ++  + + L+ + +    L+   ++ + +I  E+  +K  +        
Sbjct: 420 RLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDEKVYEKIIEELTYIKAQYGD-----S 474

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           R++   +    +    +  +I  + + + ++ +G+++          K     ++     
Sbjct: 475 RKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTFRTQKRGGKGVTGSSLM 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
             D++   ++ H   + L  ++ GK Y L    +   S    G+ I   I+++ ++ I+T
Sbjct: 535 NDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGKHISKYINIDKDEKILT 594

Query: 605 AFVYDST-CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--V 661
               D+   +L  V+  G        +      +G   +     + +  V K+  +   +
Sbjct: 595 MLSVDNFVGELFFVTKFGKVKRTSLKDFENINARGLRAINFDGNDSLVSVQKIENEKQTI 654

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            +  +N   + F I ++  M R   GV                   +    +      Y 
Sbjct: 655 LIATKNGMSIRFPISEVRTMGRSAMGVTGIKLSKDDKVVSSALLSNDENYILTVTSLGYG 714

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +        + KR G+G        ++G  +S
Sbjct: 715 KLTETSQYRIQKRAGLGIKNISDVSKTGYVVS 746



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 87/233 (37%), Gaps = 13/233 (5%)

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSAL 543
           T  G+  + +  + + +K     ++         ++  G ++              L A+
Sbjct: 574 TSKGKHISKYINIDKDEKILTMLSVDNFVGELFFVTKFGKVKRTSLKDFENINARGLRAI 633

Query: 544 HFKEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +F   DSL            IL+ + +G +   P   + +       +  +     ++ +
Sbjct: 634 NFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTMGRSAMGVTGIKLSKDDKVV 693

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
            +A + +    +L V+S G   + E S+     R G     +S   K   VV V+     
Sbjct: 694 SSALLSNDENYILTVTSLGYGKLTETSQYRIQKRAGLGIKNISDVSKTGYVVSVSYVLGN 753

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
           + + +  ++   +  +I  +  + R  KGV+L +  +G  I+D+      E +
Sbjct: 754 EDIMIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEEDV 806



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 130/405 (32%), Gaps = 50/405 (12%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           S+LIE   EL+   +I      +DE   +  I      ++   D     I    + E +F
Sbjct: 430 SKLIEDYNELVKKMKIEKELIGKDEKVYEKIIEELTYIKAQYGDSRKSEILDHEEREIKF 489

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              + ++    V   +   G LK        +   R+  R                + +N
Sbjct: 490 N-ELELIPDKEVVISLTKKGYLKMMS-----LSTFRTQKRGGK--------GVTGSSLMN 535

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            D I+ II      K +       T      +LN              ++   +      
Sbjct: 536 DDAIMEIIYTHLHGKTLF-----FTSKGKVYLLN---------NYQIEENSRTSKGKHIS 581

Query: 460 KIDSLLNSGKQQWNQIAC----EI-------REVKEIFSKSTDLGRRRTTFCEVSRADKA 508
           K  ++    K            E+       +  +       ++  R          D  
Sbjct: 582 KYINIDKDEKILTMLSVDNFVGELFFVTKFGKVKRTSLKDFENINARGLRAINFDGNDSL 641

Query: 509 TLQQAMIEKEPITVVISNRG--------WIRSLKSHSVDLSALHF-KEGDSLKIALHAHT 559
              Q +  ++   ++ +  G         +R++   ++ ++ +   K+   +  AL ++ 
Sbjct: 642 VSVQKIENEKQTILIATKNGMSIRFPISEVRTMGRSAMGVTGIKLSKDDKVVSSALLSND 701

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            + IL +++ G             +  G  I+ + D++    +V+         +++ + 
Sbjct: 702 ENYILTVTSLGYGKLTETSQYRIQKRAGLGIKNISDVSKTGYVVSVSYVLGNEDIMIFTK 761

Query: 620 KGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTGDHVA 662
            G +  +  S + A  R  KG   L +S  +K+  +  ++G+   
Sbjct: 762 HGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEEDV 806


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 384/743 (51%), Gaps = 24/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E      L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A++K
Sbjct: 5   EQFLPAYLEEMVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+V+G  HPHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYTEA
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP+H
Sbjct: 125 RLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +++E+ +A +A+++ P+I +E+++ +I GPDFPTGG+I+   E I ++YR G+G   +R+
Sbjct: 185 SLREVIDATIAVMEKPQIELEEIMTFIKGPDFPTGGLIMGG-EGIKDAYRTGKGRIYIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++ +  G   +V+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++ 
Sbjct: 244 KTEIQSLRGGKQQLVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  +   +D++  +  NM  +      Q + L  IL+ ++AH+REV+  
Sbjct: 304 ELKKEADAEGILAYLLKKTDLQVAYNFNMVAIVNKAPHQ-LGLKSILEAYIAHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431
           R  F ++  + R  +L+GL+ A   +DE+IA I   +N    +  +   F  +E Q D+I
Sbjct: 363 RIKFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQADSI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L L+L  L  LE   ++ EL ++  +  +  S+L+S ++  + I  E+ E++E +     
Sbjct: 423 LTLQLYRLTNLEITTLEKELADIQKKITQYRSILDSDRKLISLIRKELLEIREKYGID-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFK 546
               R +  +    +     + M+  E + + +S  G+++            + S    K
Sbjct: 481 ----RRSEIQGEVEEIKVNLEVMVAAEDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           EGD +   L  +T D +L+ +  G+ + LP   +     +  G  I  +I L     IV+
Sbjct: 537 EGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRIVS 596

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                +       L+ V+ KG     E +E            KV+ ++++  V       
Sbjct: 597 VIPIKNMEEIGKSLVFVTKKGQVKRTELTEYATKRSSAVAACKVAGDDEILSVTLSDNSK 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            + ++      + F   ++  M R   GV+     +G       +   +    +      
Sbjct: 657 DIMLITRAGMSIRFKEQEVNAMGRVSAGVKGIQLAEGDEIVAALWVEEDEGEVLVLTESG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741
           Y +    L      RGG G    
Sbjct: 717 YGKRTLLLDYPSQGRGGKGISTF 739


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/803 (31%), Positives = 420/803 (52%), Gaps = 67/803 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++    ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G
Sbjct: 1   MKDTEIPKDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI +  LALI+N +I I++L+++I GPDFPTGG+I+  +E I   Y +
Sbjct: 181 GMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNV 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +  G+ P++  L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICNLKEFLTNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
             R +V+ +++ F ++  + R  IL GL ++  N+D+II IIR+   P     S      
Sbjct: 359 TFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKW 418

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               +SL++ QV AIL LRL+ L  L   +I+ E+  L    + 
Sbjct: 419 KINKSLKLISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKG 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++NS K+  N I+ E++ +KE F+       RRT   +          +  I+KE +
Sbjct: 479 YKKIINSKKELLNVISEELKTIKEKFAVP-----RRTKIIDAILNY---DIEETIQKESV 530

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I        +  K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +  G     G+++  ++ L ++Q I +   +          +++  ++KG   
Sbjct: 591 YKIKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MS 682
                +  +    GK  +K+   +K+  V     D  V +  +N K + F   ++     
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKI-----------CEGLTWIDSAGRSYNRSENDLLGWL 730
           R  KG++          +++   I            +G   +      Y +   +    +
Sbjct: 711 RSSKGIKGIEL--SPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRV 768

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RGG G +     PR+G   SS
Sbjct: 769 TNRGGKGIIGIVNSPRNGSICSS 791



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 22/220 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +    K    V  + +G +R          +S    A+     D +           ++
Sbjct: 630 DEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVM 689

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------STCKL 614
           L + +GK     +  L   +G        I+L+ N +IV+  + +              +
Sbjct: 690 LSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFV 749

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G       +E     R GK  + +     +         + GD V +     ++
Sbjct: 750 LSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRV 809

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  ++ +I    R  +GVR+     G    V   KI + L
Sbjct: 810 IRVAVKEIRTAGRNTQGVRIIKL-SGDEKVVSAIKIDDNL 848


>gi|308069401|ref|YP_003871006.1| topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 215/736 (29%), Positives = 385/736 (52%), Gaps = 24/736 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G     A++KSA+ VG+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYRKSAKTVGD 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+YD +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A 
Sbjct: 72  VMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F+D ++    EPVV PS++PNLL NG+SGI+ G AT IP+H+++E+ +
Sbjct: 132 EMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A++A+++ PEI +E+++ +I GPDFPTGG+I+   E I ++YR G+G   +R++  ++ +
Sbjct: 192 ASIAVMEKPEIELEEIMTFIKGPDFPTGGLIMGG-EGIKDAYRTGKGRIYIRSKTEIQSL 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   +V+TEIPYQ+ KSRL+  +  + + K++  + ++RDES  +   ++    +  D
Sbjct: 251 RGGKQQLVITEIPYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEAD 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + ++  +   +D++  +  NM  +      Q + L  IL+ ++AH+REV+  R  + ++
Sbjct: 311 AEGILAYLLKKTDLQVAYNFNMVAIVNKAPHQ-LGLKSILEAYIAHQREVVTHRIQYELE 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  +L+GL+ A   +DE+IA I   +N    +  +   F  +E Q D+IL L+L  
Sbjct: 370 KAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFSERQADSILTLQLYR 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE   ++ EL ++  +  +  S+L S ++  + I  E+ E++E +         R +
Sbjct: 430 LTNLEITTLEKELGDIQKKIAQYRSILESDRKLISLIRKELLEIREKYGID------RRS 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-----LKSHSVDLSALHFKEGDSLKI 553
             +    +     + M+  E + + +S  G+++            + S+   KEGD +  
Sbjct: 484 DIQGEVEEIKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSFTRSGGERSSSGVKEGDYVTQ 543

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
            L  +T D +L+ +  G+ + LP   +     +  G  I  +I L+    IV+     + 
Sbjct: 544 LLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKEDRIVSVIPLKNI 603

Query: 611 ---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
                 L+ V+ KG     E  E            KV+ ++++  V    G   + ++  
Sbjct: 604 EEIGKSLVFVTKKGQVKRTELKEYATKRSSAVAACKVAGDDEVLSVTLSEGTRDIMLITR 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F   ++  M R   GV+     +G       +   +    +      Y +    
Sbjct: 664 AGMSIRFKEQEVNAMGRVSAGVKGIQLAEGDEIIAALWVEEDEGEVLVLTESGYGKRTLL 723

Query: 726 LLGWLGKRGGVGSLVP 741
           L      RGG G    
Sbjct: 724 LDYPTQGRGGKGITTF 739


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 279/792 (35%), Positives = 418/792 (52%), Gaps = 56/792 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +IS+ +T   +  + + L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDPSISDFSTAGNDEGETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G           KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI 
Sbjct: 61  MGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGDSAAA RYTEAR++++A L+L  +DE  VDF   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN+ EI  A +ALI  P ++ E+LL  + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---- 289
            S   I  +Y+ GRG  ++R+RW +EE+ RG W +VV E+P  V   R++E+I EL    
Sbjct: 241 SSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPK 300

Query: 290 --------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                         + A  + +L+ +RDES +D  VR+V  PK        L+ ++   +
Sbjct: 301 IKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R+  + RRS   +  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            I  L++DE+IAIIR  D+PK  +++R+SL++ Q + IL +RLR L +LE  +I  EL  
Sbjct: 421 QIVLLHLDEVIAIIRQADEPKAALMARWSLSDRQAEDILEIRLRQLARLEALRIGQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L   + K++ +LN        +  EI    + F+        R T  +  +       + 
Sbjct: 481 LRDRQGKLEDILNHPGALRRTLIKEIETDAKTFADP------RRTLIQAEKKAVI---EV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R    H  + ++  FK GD L       T D +L    +G+ Y
Sbjct: 532 RVPDEPVTVVVSQKGWVRVRSGHGHEAASFAFKAGDGLYGTFECRTVDTLLAFGNNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ +  LI+L     ++  F   +   LL+ +S G  F+     +I+
Sbjct: 592 SVAVSLLPGARGDGQPVTTLIELEAGTQVLHYFAGPAQATLLLSNSGGYGFLATVEHMIS 651

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR 683
             + GKTFL ++  E         G           HVA      ++L F + ++  M+ 
Sbjct: 652 RQKGGKTFLTLAGGETPCPPSHAFGSTGSAPVLPATHVACASTGGRILTFELGELKTMAN 711

Query: 684 -GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGV 736
            G+G+ L   +D   ++    +        ID  GR     E  L           RG  
Sbjct: 712 GGRGLLLIDLEDKDRLAGAAAYVRS---VRIDGLGRGGKLREETLELRSLNNARAARGRK 768

Query: 737 GSLVPKGFPRSG 748
           G     GF  SG
Sbjct: 769 GKATDLGFRPSG 780


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/782 (31%), Positives = 399/782 (51%), Gaps = 41/782 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GETGIREAYITGKG 244

Query: 249 GFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    VEE+  G        I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 GIVLRGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  +     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIV-EGQPRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R   L RR S+ +     R+  ++GLL A  N+DE+I I+R        K  + S+
Sbjct: 364 FLNFREHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++R
Sbjct: 424 LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-------------MIEKEPITVVISNR 527
            +K  +           +  E+ +  KA    +             +   E   + I++R
Sbjct: 484 SLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTENLSPLEPAEEAILEITHR 543

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGR 584
           G++R ++            E D +       T   +L+L+  GK Y +  G++       
Sbjct: 544 GYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLVLTNGGKLYPVKVGDIPLTTGRS 603

Query: 585 GHGEAIQLLIDL---NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
             G  +  ++      + + +V+  +        +L++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDG 695
            T LK+  ++++ L      G H+ +     +LL FS +   +P M R   + LQ+++  
Sbjct: 664 VTILKLKDDDELLLTQFSKAGQHLILASSGGRLLRFSANDEQLPIMGRTA-MGLQAFRLL 722

Query: 696 GISDVI-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---L 751
               ++ C    +    +      Y +           RG +G+   K   ++      +
Sbjct: 723 RNQCMVGCVNAAQAEYLLLVTEEGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAAMV 782

Query: 752 SS 753
            +
Sbjct: 783 GA 784


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 268/769 (34%), Positives = 410/769 (53%), Gaps = 49/769 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVPKGFP 745
                    +       R     +R    LL    KRG  G L+P    
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLPHIGQ 757


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 265/735 (36%), Positives = 434/735 (59%), Gaps = 25/735 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ ++++L  +    VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN +EI +A   L+DNP+  +  +++Y+ GPD+PT   ++ + E I + Y+ GRG
Sbjct: 182 TDIPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  EE      C V+T +P+QV  ++++E+IA L+ AK++PL++D+RDES  +
Sbjct: 242 SIRMRAVWQKEE-----GCAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P++  +D + +M  +F+ +D+E  + +N+N++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +RR+ +  R + R++ + RR+EILKGLLIAYLNIDE+I IIR ED+PK  ++ RF+L++ 
Sbjct: 357 YRRQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEPKAELMRRFALSDI 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL LRLR L KLEE ++++E D L  E++ I+ LLNS ++    +  EI       
Sbjct: 417 QAEAILELRLRHLAKLEEIKLQAESDELEKERDSIEKLLNSPRRLNTLLKKEIE------ 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + + + G  R +        K   +Q M+  EP+T+V+S  GW+RS K H +D S + ++
Sbjct: 471 ADAKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIVLSEMGWVRSAKGHEIDPSTMSYR 530

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
            GDS   A+   +   +L L + G++Y+L   ++ SGR  GE +   +    +  +    
Sbjct: 531 AGDSYHSAVRGMSNQPVLFLDSTGRSYSLSPNDMPSGRSQGEPLTGKLTFPPDASVKYML 590

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------H 660
              +  + L+ + +G   ++   E+    + GK  L VS E ++     V  +       
Sbjct: 591 AGAAKQEYLLATKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHW 650

Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG 716
           + ++ +  ++L  S + + EM  +G+G RL +    +   I  ++     E LT+    G
Sbjct: 651 LVIITDKTRILAISAEHLNEMNKKGRGTRLVALGKEQSDVIEQIVLIAKNEALTF-TVDG 709

Query: 717 RSYNRSENDLLGWLG 731
           +       ++  + G
Sbjct: 710 QQQTLKAEEISYFSG 724



 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/319 (23%), Positives = 139/319 (43%), Gaps = 14/319 (4%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K     I +E  N + +K +   L+  GK+Q + I   +   K      T  G+++T   
Sbjct: 657 KTRILAISAEHLNEMNKKGRGTRLVALGKEQSDVIEQIVLIAKNEALTFTVDGQQQTLKA 716

Query: 501 EVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           E        +    I       E +TV++S +G IR  K H++D  ++ FK GD    A+
Sbjct: 717 EEISYFSGDVGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGHNIDAKSVGFKTGDDYFDAV 776

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   + L+ T G++YT+    L SGR  G+ +   + +     +    + +S+ K+L
Sbjct: 777 EGMSNQAVHLIDTTGQSYTVDVDALPSGRSKGDDLTGRLKVQKGAQLRHVVMGESSDKIL 836

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLI 672
           + S  G  FI    ++ +  R GK+ L +          ++     D + ++ +  ++LI
Sbjct: 837 MASDAGYGFICSIDDLTSKNRAGKSLLTLPENALPLPPQRLNDELSDLIMIITQGGRMLI 896

Query: 673 FSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI-CEGLTW-IDSAGRSYNRSENDL 726
           F   ++P M +GKG ++ S        G   V   ++  E  +  +    R    S N+L
Sbjct: 897 FEASELPTMVKGKGNQMVSIPASQAASGEDKVAWLRVLPENASVTLHFGKRKLTMSMNEL 956

Query: 727 LGWLGKRGGVGSLVPKGFP 745
             +  KRG  G+ +P+G  
Sbjct: 957 QTFKAKRGRRGTSLPRGAQ 975


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/845 (30%), Positives = 410/845 (48%), Gaps = 115/845 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + V  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +
Sbjct: 1   MSDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG++DGD  A+ RYT
Sbjct: 61  KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ Q A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IP
Sbjct: 121 EARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +A++  IDNPE+++E+L+  I GPDFPTGG+I+     I  ++  GRG   +
Sbjct: 181 SHNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIM-GDAGIKSAFATGRGTIII 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +  +EE+  G   I++ EIPYQ  K++L+E+I EL+  K+I  + D+RDES +    V
Sbjct: 240 QGKTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++  +++  +  L+ + T F +N  VL     P+VM L  I++ ++A R+EVL
Sbjct: 300 AIELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNS-RPRVMSLIEIIETFVAFRKEVL 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------- 418
            RR+ +R++ +  R  +  G+ IA LNIDEI+AIIR                        
Sbjct: 359 VRRTRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVR 418

Query: 419 ---------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                           R+ LT  Q+ AIL +RL+ L  LE+ +++ EL +++A   +   
Sbjct: 419 GMIELVSDSTGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTK 478

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L++       +   + +VK   +       RRTT  E   +      +++I +E + V 
Sbjct: 479 ILSTDSLLMCMVREGLLDVKRRVATP-----RRTTIEE---SKGDIDAESLIPREEMVVT 530

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++  G+++          K       A   KE D         T   +L  S  GK Y L
Sbjct: 531 VTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKL 590

Query: 576 PAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDS--------TCKLLVVSSKGNAFI 625
               L  G     G ++  +  L   + I +              +  ++  +S GN   
Sbjct: 591 KVYKLPLGEPASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRR 650

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
              ++       GK  + ++  +++    V V+ DHV +     K + FS+  + +  +G
Sbjct: 651 NALADFQYVPSNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQF-KG 709

Query: 685 K---GVRLQSYKDGG-------------------------ISDVICFKICEGLTW----- 711
           +   GVR     +G                          +   I     +G +      
Sbjct: 710 RMSDGVRAIKLAEGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVS 769

Query: 712 -----------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                                  +      + +  +        RGGVG L      R+G
Sbjct: 770 GMLEGLQLSEETFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARNG 829

Query: 749 KFLSS 753
           K ++S
Sbjct: 830 KVVAS 834



 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 13/206 (6%)

Query: 528 GWIRSLKSH-SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---- 582
           G +R  K   S  + A+   EGD +                       +P  + +     
Sbjct: 702 GNVRQFKGRMSDGVRAIKLAEGDQVISMSVL--HGSEASSEVREAYLKIPVDSRIKAAES 759

Query: 583 -GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            G   G+ +  +++     +     +      +L V+  G        E     R G   
Sbjct: 760 DGESIGKRVSGMLEGLQLSEETFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGV 819

Query: 642 LKVSSEEKMKLVVK----VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           L + +  +   VV        D V ++ +  KL+  S+  I  + R  +GV L   + G 
Sbjct: 820 LNILTTARNGKVVASFSVAHTDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGE 879

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRS 722
               +   I  G    D  G     S
Sbjct: 880 KVVSVALVIDSGDNCDDDEGIGGEVS 905


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 291/775 (37%), Positives = 432/775 (55%), Gaps = 44/775 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L E+    ++L    E  YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL   A
Sbjct: 31  DLNEDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADA 90

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DGD AAA R
Sbjct: 91  KPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMR 150

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+T++A L+L  +DE  VDF   Y+    EP + P++ P +L NG SGIAVGMAT 
Sbjct: 151 YTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATE 210

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN++E+  AA+AL+ +P++S  +LL  + GPD+P GG I+ S   I + Y  GRG  
Sbjct: 211 IPSHNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSI 270

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIA 292
           +VRARW VEE+ RG W IVV E+P      R++++I E+                  + +
Sbjct: 271 KVRARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKS 330

Query: 293 KRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             + +L+ +RDES++D  VR+V  PK++++D +  +  +   + +E+  P+N+ ++    
Sbjct: 331 TILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDG 390

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P+   L  IL EW+  R   + RR+ +R+  +  R+ IL+G LI  LNID++I IIRN 
Sbjct: 391 RPRQKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNS 450

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+PK  ++  F L++ Q + IL++RLR L +LE  +I+ EL  L  E++ ++ LL S   
Sbjct: 451 DEPKSDLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKQLQTERDDLEGLLQSDAV 510

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
              +I  EI    + F        RRT   E    DK  + +  +  EP+TV++S +GW+
Sbjct: 511 LRKRIIKEIESDLKDFGD-----DRRTLIQE----DKRAVAETKVIDEPVTVIVSQKGWV 561

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R  + H  D +   FK GD+L       T D I    +DG+ YT+    L   RG G  +
Sbjct: 562 RVRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGARGDGSPL 621

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSS 646
              ++L     +V  +       +L+ +  G  F+   S++    + GK+F+    KV  
Sbjct: 622 TSFVNLATGSQMVAYYAGQPDDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVDSKVPG 681

Query: 647 EEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFK 704
           +  +    VKV    VA + E  KLL+FS+D++  + + GKGV L    D          
Sbjct: 682 DAPLGAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTGGKGVILMGLDDKEFLASAIAV 741

Query: 705 ICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLV-PKGFPRSGKFLSS 753
             +G T+   AGR+   +E       L  + G R   G  V P+   + GK  +S
Sbjct: 742 GSDGATY-SGAGRAGKPTELSLDAKTLKSFAGNRARKGHFVEPRL--KDGKLKAS 793


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 237/772 (30%), Positives = 408/772 (52%), Gaps = 31/772 (4%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D  +N       N++ V+L   +++ +L+YA+S I  RA+PD++DG KPV RRI+++M
Sbjct: 7   QNDEANNHKDHDHGNIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSM 66

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            E+G+   A++KK+AR+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G GNFG+I
Sbjct: 67  KELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSI 126

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE +M ++A  +++ +D+D +DF D Y+  + EP+V P+  PNLL NG +
Sbjct: 127 DGDKAAAMRYTEVKMAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGAT 186

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IP+HN+ E+ +  +  I+N +ISI++L+++I GPDFPTGG ++   +S+  
Sbjct: 187 GIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKS 245

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G+G   ++A+  V +  RG   I+VTEIPYQV+K+ LIEKIA L+  K +  + D+
Sbjct: 246 AYHTGQGAVILKAKSHVSKE-RGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDL 304

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES+     ++    R  +  +++  ++  S +   F +NM  L  G+ PQ++ L  IL
Sbjct: 305 RDESSRKGMKIVIELKRDANSKIILNKLYKHSQLRISFGINMVALV-GKTPQLVSLKQIL 363

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---V 418
           + +   R EV+ R+ SF ++    R  ++  L+    +I+  I +I+     K      +
Sbjct: 364 EAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLM 423

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R++  E Q  AIL + L+ L   E  ++ +E  NL  E  +  S+++S K++   +  E
Sbjct: 424 QRYNFDEIQSKAILEMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQKKKERILEKE 483

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530
           + E+K+ +        R+TT      A      + +IE++PI + I+N+G+I        
Sbjct: 484 LLEMKKKYQD-----DRKTTL--NFDAPLNFEDEDLIEEKPIIITITNKGYIKSMDIDTY 536

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGE 588
           +  K     +S +   E D ++      T D  L  +  GK Y L    +     +  G 
Sbjct: 537 KQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGS 596

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            +   +    ++      +   +D +   L   + KG        E    +++G   +++
Sbjct: 597 HLVNFLPFEKDEFLTSFTSVKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRL 656

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVI 701
              +++  V K TG  ++ +   N   + F   +I  +SR   GV       D  +    
Sbjct: 657 KENDEVLTVNKTTGTKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDEFLVGAA 716

Query: 702 CF-KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            F    +    +      + +  N     + +R G GS   K   + G+ ++
Sbjct: 717 LFDTDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVNDQKGRLIT 768



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 16/218 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T  +   + +      + +G ++              L A+  KE D +        T  
Sbjct: 614 TSVKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVNKTTGTKN 673

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSS 619
           I+L S +G A       + S   +   +  +  L  ++ +V A ++D+  K   +LV++ 
Sbjct: 674 IILASNNGNAICFCETKIKSISRNSMGVIGM-RLGSDEFLVGAALFDTDSKEQNILVMTE 732

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSI 675
            G   I   ++     R GK    +   ++    + L V +  D + V  +  +++  +I
Sbjct: 733 NGFGKITNVNQYRIQERSGKGSKTIKVNDQKGRLITLQVVLPTDDLIVSSDKGQVVRVAI 792

Query: 676 DQI-PEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           DQI    ++   G R+   K G  +  +     E L  
Sbjct: 793 DQITKTKNKATQGTRIIKLKTGHKAVSVAVVKKEVLDV 830


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 233/702 (33%), Positives = 370/702 (52%), Gaps = 37/702 (5%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD RDG KPVHRRI++AM E+GL     F+K AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153
           YD+LVR+AQ F  R PLI+G GNFG+ID D  AA RYTE R+  +    +LQ ++ + VD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ +  +ALI NPEI+
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG----SWCIV 269
             +L++Y+ GPDFPTG  I+    +I E+Y  GRG   +R    +E + +        I+
Sbjct: 181 DTQLMQYVHGPDFPTGAQIL-GTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAII 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PYQ  K+ LIEKIAEL+  K+I  + DIRDES  D   ++    R   P +++ ++
Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + ++T F  NM  L  G  PQ++ L   L  +L  R E + RR+ ++++  + R  +
Sbjct: 300 YKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHL 358

Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           L+GLLIA  ++D II +IR   +    K  +++ + L+E Q DAIL ++LR L  LE  +
Sbjct: 359 LQGLLIALAHLDSIINLIRSAPDAPTAKGELINSYGLSEVQADAILQIQLRRLTALEADK 418

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           I+ E + L  +   +  +L+  ++    I  E  ++K  F+       RRTT        
Sbjct: 419 IRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFATP-----RRTTITHAEG-- 471

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAH 558
                  +I  E + ++++ +G+I+ +   + +              K+ D+++  L   
Sbjct: 472 -EIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAGAKVKDDDTIEHFLTCC 530

Query: 559 TTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613
             D +L  S  G  Y+L A  +   S    G  I  ++ +   + I +      + S   
Sbjct: 531 DHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEEKITSIVSVSEFSSEEY 590

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLI 672
           L++++  GN               G   + +   ++++ V +    D V +       + 
Sbjct: 591 LVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQGMAIH 650

Query: 673 F--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711
           F    DQ+  + R  +GV+    K G   ++I   I      
Sbjct: 651 FRCDNDQMRPLGRATRGVKSMKLKTG--DELIGMDILPAAIL 690



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSSE---EKMKLVVKVTGDHVAVVGENR 668
           +L+++  G    V   +     R G   T  K  +    +++  +  V  D   ++  NR
Sbjct: 734 VLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNR 793

Query: 669 K-LLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG 708
             ++  SI+ I   SR   GVR+Q   +D  I+ V       G
Sbjct: 794 GIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAG 836



 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 562 RILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
            +L+++  G    +P G   L +  G G       +      + T  + +   ++++ ++
Sbjct: 733 WVLIITIGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATN 792

Query: 620 KGNAFI--VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           +G      +    I + T  G    K+  ++ +  V  V  D
Sbjct: 793 RGIIIRQSINAISIQSRTATGVRVQKLDEDDAITGVAVVPPD 834


>gi|332284680|ref|YP_004416591.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
 gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 262/753 (34%), Positives = 410/753 (54%), Gaps = 35/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++    ++L    E+ YL YA+S ++ RA+P++ DG KPV RRI++AM  MGL  GA   
Sbjct: 12  DQGGDDITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPV 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ FV RYPL+ GQGNFG+ DGD+AAA RYTE
Sbjct: 72  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A ++L  +DE  VDF   Y+    EPV+ P++ P +L NG SGIAVGMAT IPS
Sbjct: 132 ARLTPFARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPS 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +A +ALI NP++  E L   + GPDF  GG I+ S   I   Y  GRG  + R
Sbjct: 192 HNLREVAQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKAR 251

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKRI 295
           ARW  EE+ RG W +VV E+P      +++E+I +                   I A  +
Sbjct: 252 ARWQFEELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALML 311

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            LL+ +RDES +D  VR+V  PK   +D D  +  +   + ME    +N+  +     P 
Sbjct: 312 GLLDAVRDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPG 371

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  +L EWL  R + + RR+ +R+  +  R+ +L+G ++ YLN+DE+I  IR  D+P
Sbjct: 372 QRALRQVLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEP 431

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ RF L+E Q + IL +RLR L +LE ++I+ EL     E+  +  LL++      
Sbjct: 432 RAALMQRFDLSERQAEDILEMRLRQLARLEGFKIEKELAAQRDEQAALRELLDNPSAFKR 491

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  EI       + +   G  R T  EV+      + +  + +EP+TV+IS RGW+RS 
Sbjct: 492 LMIKEIE------ADAKQYGDDRRTLIEVAERA---VLENRVVEEPVTVIISQRGWLRSR 542

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D S  +FK GD L  A+   +TD ++  S  G+ YT+   +L S RG G+ +  +
Sbjct: 543 QGHGHDASQFNFKAGDGLYDAIECLSTDELVAFSNTGRVYTVAVSSLPSARGDGQPVTSM 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +++     I       +  + ++ +  G  FI    ++    R GK F+ +   + +   
Sbjct: 603 MEVESGSRITHMIAGAAQQRYVLGTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKP 662

Query: 654 VKV--TGDHVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710
           +++  T  H+A++ +  + L+ ++ ++      G+G  L     G I         +G+ 
Sbjct: 663 LRLRDTDQHLAMLAKKGRFLVVALSELKRLSGGGRGTILMGLDAGDILAQWVPVGPDGIL 722

Query: 711 WIDSAGRS---YNRSENDLLGWLGKRGGVGSLV 740
                         S + L  +LGKR   G ++
Sbjct: 723 AKGVYRNRDIVETLSLDALGEYLGKRARKGKIL 755


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/774 (34%), Positives = 409/774 (52%), Gaps = 66/774 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK------ 73
           + L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +           
Sbjct: 18  LDLGQYAQRAYLEYALSVVKGRALPDVTDGLKPVQRRILYAMDRMGLSYSGPNHNTAAKP 77

Query: 74  -KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYT
Sbjct: 78  VKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYT 137

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++  L+L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 138 EARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPQQLPARLPFALLNGASGIAVGLATEIP 197

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN++E+ +A +ALI  P++S E+L + I GPD+P GG I+ S   I ++YR GRG  ++
Sbjct: 198 SHNLREVADACVALIKRPQLSDEELFQIIPGPDYPGGGQIISSASDIQDAYRTGRGSLKL 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKR 294
           RARW +EE+ RG W +VVTE+P  V   +++E+I +                   + A  
Sbjct: 258 RARWKIEELARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASM 317

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES++D  VR+V  PK   +    L+ ++   + +E+   +N+ ++ +   P
Sbjct: 318 LAVLDGVRDESSKDAPVRLVFEPKTGKVPQQELITALLAHTSLESSSSINLTMIGLDGRP 377

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L+EW+A R+  + RRS  R+  +  R+ IL+G     LNID++IAIIR  D+
Sbjct: 378 VQKSLRLMLEEWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQAVLLNIDKVIAIIRASDE 437

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P+  ++  F+L+E Q D IL +RLR L +LE  +I+ EL  L  E+ K++ +L S     
Sbjct: 438 PRQALIDAFALSERQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGSESTMR 497

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI    + F+ +      R T  +  +   A ++      EP TV+IS++GW+R+
Sbjct: 498 RLICKEIEADAKQFADA------RRTLIQEEKKVVAEVKVV---DEPTTVIISDKGWVRT 548

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H VD   L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  
Sbjct: 549 RQGHGVDAGTLSFKAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGGRGDGQPVTT 608

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           LI+L     I+  F       LL+  S G  F+    ++++  + GK F+ ++  E +  
Sbjct: 609 LIELEAGTQILYYFAGAEGTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCA 668

Query: 653 V----------------------VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                                  + +   HV       ++L F I  +  M++ G+G  L
Sbjct: 669 PSTAYGVPMGARAEPQEGEQGAGLLLPATHVICASTGGRILTFEIASLKHMAKGGRG--L 726

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
                     +           ID  GR        L         G RG  G 
Sbjct: 727 MLLDLEDKDTLAGAAAYTRSIRIDGVGRGGKERSETLEIRSLNNARGTRGRKGK 780


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/803 (31%), Positives = 420/803 (52%), Gaps = 67/803 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + ++    ++N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI+ AM + G
Sbjct: 1   MKDTEIPKDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ +V++ ++  +++D ++++  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI +  LALI+N +I I++L+++I GPDFPTGG+I+  +E I   Y +
Sbjct: 181 GMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNV 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE    G   +V+T +PYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +  G+ P++  L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICDLKEFLTNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------ 419
             R +V+ +++ F ++  + R  IL GL ++  N+D+II IIR+   P     S      
Sbjct: 359 TFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKW 418

Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               +SL++ QV AIL LRL+ L  L   +I+ E+  L    + 
Sbjct: 419 KINKSLKLISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKG 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++NS K+  N I+ E++ +KE F+       RRT   +          +  I+KE +
Sbjct: 479 YKKIINSKKELLNVISEELKTIKEKFAVP-----RRTKIIDAILNY---DIEETIQKESV 530

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I        +  K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +  G     G+++  ++ L ++Q I +   +          +++  ++KG   
Sbjct: 591 YKIKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE-MS 682
                +  +    GK  +K+   +K+  V     D  V +  +N K + F   ++     
Sbjct: 651 KNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKI-----------CEGLTWIDSAGRSYNRSENDLLGWL 730
           R  KG++          +++   I            +G   +      Y +   +    +
Sbjct: 711 RSSKGIKGIEL--SPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRV 768

Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753
             RGG G +     PR+G   SS
Sbjct: 769 TNRGGKGIIGIVNSPRNGSICSS 791



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 73/220 (33%), Gaps = 22/220 (10%)

Query: 511 QQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +    K    V  + +G +R          +S    A+     D +           ++
Sbjct: 630 DEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVM 689

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------STCKL 614
           L + +GK     +  L   +G        I+L+ N +IV+  + +              +
Sbjct: 690 LSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFV 749

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L ++  G       +E     R GK  + +     +         + GD V +     ++
Sbjct: 750 LSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRNGSICSSFPVIEGDDVMISTNKGRV 809

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  ++ +I    R  +GVR+     G    V   KI + L
Sbjct: 810 IRVAVKEIRTAGRNTQGVRIIKL-SGDEKVVSAIKIDDNL 848


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 233/780 (29%), Positives = 395/780 (50%), Gaps = 53/780 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +  T +   V+   +   +E+ Y+ YA+S I  RA+PD RDG KPVHRRI++AM + G+ 
Sbjct: 10  DPETGIAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGIS 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             +A +KS+ IVGE +G  HPHGD ++Y++L R+AQ F  R PL+ GQGNFG++DGD  A
Sbjct: 70  ARSAHRKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPA 129

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM+ +AE +L  ++ D V+F   Y++  SEP V P+ FPNLL NG+SGIAVGM
Sbjct: 130 AMRYTEARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGM 189

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T+IP HN+ E+ +A + LI +PE ++E L+ ++ GPDFPTG   +  + +I ++Y+ GR
Sbjct: 190 STNIPPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGA-NIVGQNAIYKAYKTGR 248

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  RVRA + V++       IV+TE+P+Q  K+RL+E+IA+ + A  I  + D+RDES  
Sbjct: 249 GRVRVRAEFDVQDD-----RIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDR 303

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   V+    R  +PD++   + +   +E+ F +    L  G+ PQV+ L   L E+L H
Sbjct: 304 DGIRVVVELKRGANPDIVKNQL-LEHHLESTFGVINLALVDGQ-PQVLTLKETLHEYLEH 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF--- 421
           RR V+ RRS + +     R  IL+G L A   +D+++ IIRN    D  K  +       
Sbjct: 362 RRTVVRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVE 421

Query: 422 -----------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                        +E+Q + I+ ++L SL  LE  +I+ E +++    E++ ++LN+  +
Sbjct: 422 SDERGESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPDE 481

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +  E+  +++ ++       RRT   E    D     + +I +E + VV++   +I
Sbjct: 482 LDAVVEDELATIRDKYADE-----RRTRIIE---DDGTVTHEDLIAQEDVVVVVTEDDYI 533

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +                +     K+GD++     A+T D +L  ++ G+ Y L    +  
Sbjct: 534 KRMSLEDFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPE 593

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVY-------DSTCKLLVVSSKGNAFIVEESEIIA 633
            S    G++   L++L+  + I             D      +V+  G       +    
Sbjct: 594 MSRTARGKSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQN 653

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
               G   + + +++K+  V    G+  + +       + F+   +  + R  +GV    
Sbjct: 654 IRSTGIIAISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSVGRSARGVHGIK 713

Query: 692 YK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            +    ++ +      +    +      Y +  +        R G G +  K   R+G  
Sbjct: 714 LEDTDAVAALAAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHV 773



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 19/238 (7%)

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALH 544
           D G + T     +  D          +E    +++  G+I+           S  + A+ 
Sbjct: 610 DDGEQITAVVNTAEMDIDDD------EERYFTMVTQSGYIKRTSVNSFQNIRSTGIIAIS 663

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIV 603
               D L           I+L +  G A     G++ S       +  + ++       +
Sbjct: 664 LGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSVGRSARGVHGIKLEDTDAVAAL 723

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GD 659
            A   D    +L V+  G     +       +R GK  + + + E+   V +V      D
Sbjct: 724 AAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHVCEVETVGISD 783

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD-GGISDVICFKICEGLTWIDSA 715
            + ++    ++L   +D I  + R   GV +   +D   ++ V      +  +  DS 
Sbjct: 784 ELFMMSRKGQILRTPVDDISTVGRNTMGVIVMDLEDTDTVASVDTHPRTDDSSEADSG 841


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 216/712 (30%), Positives = 386/712 (54%), Gaps = 30/712 (4%)

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              ++ +D    F  +  +V   +GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+
Sbjct: 485  TYDIQVDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGS 544

Query: 121  IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            IDGDS AA RYTEAR+++++  +L+ +++D VDFR  ++E  +EP V P++FPNLL NG+
Sbjct: 545  IDGDSQAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGS 604

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            +GIAVGMAT+IP HN++E+C+A   ++D+ E    +LL+++ GPDFPTG  I+   E++ 
Sbjct: 605  AGIAVGMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINP-ENLK 663

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            + Y  GRG   +RA+  +EEV R    IV+TE+PYQV K+ LI++IA+L+  K+I  + D
Sbjct: 664  KIYETGRGSVTIRAKHTIEEV-RKKTAIVITELPYQVNKAALIKQIADLVKEKKIDGISD 722

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            IRDES  +   V+    R   P++++  ++  + ++T F  NM  L  G  P+++ L   
Sbjct: 723  IRDESDREGIRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALVNGE-PKLLNLKTY 781

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417
            LKE++  RREV+ R+++  ++  + R+ IL+GL IA  NI+ +I I+R+ + P   + ++
Sbjct: 782  LKEFIEFRREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIAQELL 841

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               F L++ Q  AIL+++L+ L  LE  +I SE + L  + E    +L++ ++Q   I  
Sbjct: 842  EKEFGLSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDIEYYRFVLSNREEQKRLIKE 901

Query: 478  EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------- 530
            +I E+ + +               +   +     ++MIE+E + + ++++G+I       
Sbjct: 902  DIDEIIKNYGDERKTA--------IVSKESEIDIESMIEEEEVVIFLTHKGFIARTSAKS 953

Query: 531  -RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
             ++       +  +  +EGD +K  + A + D +L+ +  GK Y L A  +        G
Sbjct: 954  YKTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAYEIPKTEKSTRG 1013

Query: 588  EAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            ++I+  +      ++V+  +    +     +  V+ +G       SE       G   + 
Sbjct: 1014 QSIRNFLPGMSGAEVVSRIIPVKDFSEKKDIFFVTQRGYVKRTSLSEFSNPRSTGINAIN 1073

Query: 644  VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
            +   +++  V  V   D++ ++ +  + + F +  + +M R  +GV+     +       
Sbjct: 1074 LEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQMGRSARGVKGMLLDEEDRIMAG 1133

Query: 702  CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +  +    + Y +        L +RGG G +  K   ++GK   +
Sbjct: 1134 TVVQPDDVYLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSEKTGKIADA 1185



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          E +  VS+   +++ YL YA+S I  RA+PD+RDG KPVHRRI+++M ++GL     +KK
Sbjct: 2  EKIIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKK 61

Query: 75 SARIVGEVIGK 85
          SARIVGE   K
Sbjct: 62 SARIVGECFVK 72



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 12/196 (6%)

Query: 517  KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            ++     ++ RG+++           S  ++A++ + GD L         D ILL+S  G
Sbjct: 1040 EKKDIFFVTQRGYVKRTSLSEFSNPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGG 1099

Query: 571  KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
            +A      ++         ++ ++    ++ +    V      LL+V  KG    V  SE
Sbjct: 1100 RAIRFHVQDVRQMGRSARGVKGMLLDEEDRIMAGTVVQPDDVYLLIVMEKGYGKRVLLSE 1159

Query: 631  IIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                 R GK  +     EK       +     + V +V  N K++  +   +P  SR  +
Sbjct: 1160 FPLQRRGGKGLIAAKLSEKTGKIADAITLKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTR 1219

Query: 686  GVRLQSY-KDGGISDV 700
            GVR+Q   K+  +  V
Sbjct: 1220 GVRIQKLSKEDVVVSV 1235


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/775 (35%), Positives = 408/775 (52%), Gaps = 67/775 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-------AF 72
           + L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +           
Sbjct: 18  LDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMERMGLSYSGPNGNTAAKP 77

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYT
Sbjct: 78  VKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYT 137

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++  L+L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 138 EARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIP 197

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +V
Sbjct: 198 SHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKV 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKR 294
           RARW +EE+ RG W +VVTE+P  V   +++E+I +                   + A  
Sbjct: 258 RARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASM 317

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P
Sbjct: 318 LAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRP 377

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L+EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+
Sbjct: 378 VQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDE 437

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S     
Sbjct: 438 PKQALIEAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMR 497

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI    + F  +      R T       +K  + +  +  EP TV+IS +GW+R+
Sbjct: 498 RLICKEIEADAKTFGDA------RRTLI---HEEKKVVAEVKVVDEPTTVIISEKGWVRT 548

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H VD + L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  
Sbjct: 549 RQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTT 608

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +I+L     ++  F      +LL+  S    F     ++++  + GK F+ +   E +  
Sbjct: 609 MIELEAGTQLLYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCA 668

Query: 653 VVKVTG-----------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
              V G                        HV       ++L F I ++  M + G+G+ 
Sbjct: 669 PSVVHGVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLM 728

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           L S +D     +           +D  GR        L         G RG  G 
Sbjct: 729 LISLEDK--DQLAGAAAYTRSIRLDGVGRGGKARTETLEIRSLNNARGNRGRKGK 781


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 213/711 (29%), Positives = 348/711 (48%), Gaps = 36/711 (5%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
              +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  A
Sbjct: 1   PDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGM
Sbjct: 61  AMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGM 120

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESY 243
           AT+IP HN+ E+ EA    +DN E   E     ++E + GPDFPT G+IV   + I ++Y
Sbjct: 121 ATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIV-GTQGIADAY 179

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG  R+R    VEE  RG   +V+TE+PYQV     I  IA+ +   ++  + +I D
Sbjct: 180 KTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIED 239

Query: 304 E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           + S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++
Sbjct: 240 QSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIR 298

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419
            ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++ 
Sbjct: 299 HYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIE 358

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+
Sbjct: 359 LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL 418

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--------ITVVISNRGWIR 531
            E+ E    +     RRT       AD     + +I +E                    R
Sbjct: 419 AEIVEKHGDA-----RRTRIV---AADGDVSDEDLIAREDXXXXXXXXXXXXXXXXXXYR 470

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
           S K     +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ 
Sbjct: 471 SQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQH 530

Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +  L+     + I        Y+    L++ +  G     + ++  +N   G   + +  
Sbjct: 531 VANLLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRD 590

Query: 647 EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVIC 702
            +++   V  +  D + +V  N + + FS     +  M R   GV+   +       +  
Sbjct: 591 NDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYL-LSL 649

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 650 NVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 700



 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 32/94 (34%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 625 LRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 684

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +  ++       +V A + D   +L  ++S G  
Sbjct: 685 VLTVMYDRRRGRLVGALIVDEDSELYAITSGGGV 718


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 267/752 (35%), Positives = 444/752 (59%), Gaps = 29/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD  + 
Sbjct: 1   MTKDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYR 130
           +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+  D  S AA R
Sbjct: 61  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++T  A L++  +    VD++  ++    EPV+FPSK P +L NGTSGIAVGMAT 
Sbjct: 121 YTESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN+ E+ +A + +++ P+  +  LL+ I GPDF     I+ + E + E Y  GRGGF
Sbjct: 181 IPSHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           +++A+W  E        I++  +PYQ   S+++E+IAE ++ K++P++ D+ DE   +  
Sbjct: 241 KIQAQWKQE-----KNSIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           VR+V+  K+  ++ + LM  +F  +D++  + +NMN++S+   P+V PL  +LKEWLA R
Sbjct: 296 VRLVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ + R+   R+  ++ R+ IL+GLL  +++IDE+I IIR  D+PK  ++  F L+E Q 
Sbjct: 356 KDTVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKKDLIKAFKLSEIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL ++LR L KLE+ +++ E +NL  E+ +I+ +L S  +    I  E+ E+KE+F  
Sbjct: 416 NAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEIEKVLKSKARLKTLIKKELIEIKEMF-- 473

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G  R +    S   K   ++  +  EPITVV+S  GWIRS K H +D  +L ++  
Sbjct: 474 ----GEERKSPIIESSNAKVFSEEDTLVTEPITVVLSKAGWIRSAKGHDIDPHSLSYRGD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D+L+      +    + L ++GKAY++P+ +L S RG GE I   ++ +     +++ + 
Sbjct: 530 DNLQDFARGKSNQLAVFLDSNGKAYSIPSHSLPSARGMGEPITGRLNADSGVQFISSIIG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666
           +   K L++++ G  +I E   +  N + G+ F+K+    KM   + +  DH  +A V  
Sbjct: 590 EDNGKYLIMNTAGYGYISEFKNMTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK------ICEGLTWIDSAGRSYN 720
             KLLIF ++++P + +GKG ++ +     +S    F         E    I+   RS  
Sbjct: 650 IGKLLIFKLEELPILGKGKGNKIINIPKDKLSAGEEFMAHAQVLADESSLMIEVGKRSVT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               D   ++  R   G        + GK ++
Sbjct: 710 LKPKDWNEYILSRAKRGK-------KVGKLIN 734


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 274/744 (36%), Positives = 447/744 (60%), Gaps = 22/744 (2%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            +SL+   E+ YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR 
Sbjct: 7   NISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSART 66

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMT 137
           VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+  D  S AA RYTE+++T
Sbjct: 67  VGDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLT 126

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A+L++  +    VD++  ++    EPV+FP+K P++L NGTSGIAVGMAT I SHN+ 
Sbjct: 127 KFAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHNIN 186

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A + +++NP+ + + LL+ I GPDF     IV + E + E Y  GRGGF+++A W 
Sbjct: 187 EVLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQANWD 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE--SAEDVRIVLFP 315
            E        IV+T +PYQ   S+++E+IA+ ++ K++P++ D+ DE    E VR+V+  
Sbjct: 247 KEGND-----IVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVISL 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+  ++ D +M  +F  +D++  +  NMN++S+   P+V  LD +LKEW+  R+  + R+
Sbjct: 302 KSNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKITVTRK 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              R+  ++ R+ IL GL I YLNIDE+I IIR  D+PK  +  +F L++ QV+AIL +R
Sbjct: 362 LENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEPKKELSKKFKLSDIQVNAILEIR 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR L KLE+ +I++E + L  E+ +I+ +L S  +    I  E+ E+K+ F      G  
Sbjct: 422 LRQLAKLEQIKIETEQNKLSEEQSEIEKILASRSRLKTLIKNELIEIKQEF------GEE 475

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           R +    S + K   ++  I  EP+T+V+S  GWIRS K H +D S+L ++  D L+   
Sbjct: 476 RKSPIIESSSAKVFSEEETIVTEPVTIVLSKAGWIRSAKGHEIDPSSLSYRGDDLLQDFC 535

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +    + L+++GKAYTL A +L S RG G+ I   I  +      +  + +   K +
Sbjct: 536 RGKSNQNTVFLASNGKAYTLSAHSLPSARGLGDPITGRISADSGIIFKSCAIGEQEDKYV 595

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIF 673
           V +S G  +I + + +I+N + G+ F+KV     +   +K   DH  +  +    ++LIF
Sbjct: 596 VSNSAGFGYISDFASMISNKKSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIF 655

Query: 674 SIDQIPEMSRGKGVRLQSY-----KDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLL 727
           +I+++P + +GKG ++ +      K G  S   I     E +  IDS  +       DL 
Sbjct: 656 NIEELPFLQKGKGNKIINIPTPKFKSGEESMTHIELLAPESILRIDSGKQHMRLKFKDLQ 715

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFL 751
            ++  R   G+++P+G+ +    +
Sbjct: 716 NYISTRAKRGNMLPQGYRKVDSII 739


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 276/770 (35%), Positives = 423/770 (54%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQYGD-----DRRTLIQE----ERRAAAEVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYN------RSENDLLGWLGKRGGVGS 738
             +   + F    G     +  RS         +      + GKR   G 
Sbjct: 712 ETLVQALAFGPA-GFAVSGAGPRSGKAAEQAFTTTRAQEPYAGKRARKGK 760


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/778 (32%), Positives = 390/778 (50%), Gaps = 65/778 (8%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   +   YL Y+LS    RAIPD+RDG KPV+RRI++AM ++GL    A  K AR+
Sbjct: 10  QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGEV+GK HPHGD ++YD+LVRLAQ F  R PLI GQGNFGNIDGD AAA RYTE RM +
Sbjct: 70  VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L  +++D V+    ++E ++EP V P+++P LL NGT+GI VGMATSIP HN+ E
Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A + L+DNP+ ++++L+EY+ GPDFPTG I +  R S+ + Y+ G G  ++RA+  +
Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAI-IRGRYSMRQFYQTGHGSIKIRAKADI 248

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317
            E   G   I+V+EIPY + K +L++KIAEL+  KRI  +  +RDES+      ++    
Sbjct: 249 IE-KDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIK 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R     +++  +F  + +ET     M V      P+ M L  +L+ ++ HR EV+ RR+ 
Sbjct: 308 RGAMGSVVLNQLFAHTMLETTIGCTMLV-VDHNRPRTMNLVQVLQAYIDHRLEVIVRRTL 366

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F ++    R  IL+GL+ A  NI++++ IIR           +++RF  T+ QVDAIL++
Sbjct: 367 FELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFEFTQIQVDAILDM 426

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L  L    + +E + L    E + +L  S + Q   I  E++E++E ++       
Sbjct: 427 RLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEIREKYADP----- 481

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E++  D       +I +    + +SN G+I+                +  +  K
Sbjct: 482 RRT---EITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIGMETK 538

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           E D ++   +A + D I   +  G  Y L    +   S  G G AI  +I +   + I  
Sbjct: 539 EEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAITNMIKVEPGEKICA 598

Query: 605 AFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT 657
                     D    +++ S +G     E +      R G   L +  ++ +    +   
Sbjct: 599 MLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVIEEDDDLIGAGISEN 658

Query: 658 GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICE------- 707
           G+ + +  +     +F  D   I  M R  +GV    +K  G S V    I E       
Sbjct: 659 GNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDSVVSLEIIREHLYEEPA 718

Query: 708 -----------------------GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                                  G   +        +          KRG  G +  K
Sbjct: 719 EDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIK 776



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 75/238 (31%), Gaps = 42/238 (17%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E   A     Q+   +     V+ S RG+I+            V L AL  +E D L  A
Sbjct: 594 EKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVIEEDDDLIGA 653

Query: 555 LHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +   + ILL +  G A  +      +         +  +        +V+  +     
Sbjct: 654 GISENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDSVVSLEIIREHL 713

Query: 613 K------------------------------LLVVSSKGNAFIVEESEIIANTR--KGKT 640
                                          +LVV+  G       S      R  KG  
Sbjct: 714 YEEPAEDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVV 773

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
            +K+   E +  VV++T  D + +  E  +L+     +I  + R   GVR+ +   G 
Sbjct: 774 NIKLREGETVLSVVQITEEDEILLTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGD 831



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L+++  G             +   + +   I L   + +++        ++L+ + +G 
Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVN-IKLREGETVLSVVQITEEDEILLTTERGQ 803

Query: 623 AFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHV 661
              +   EI    R   G   + ++S +++  V K+    V
Sbjct: 804 LVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDV 844


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 264/765 (34%), Positives = 417/765 (54%), Gaps = 42/765 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N    N    +N  A++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  +
Sbjct: 2   NQLELNAAGGDNGDAITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERL 61

Query: 65  GLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           GL F         KSAR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPLI GQGNFG+
Sbjct: 62  GLAFTTAGGPKAMKSARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGS 121

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+  +  L+L  +DE  VDF   Y+    EP   P++ P +L NG 
Sbjct: 122 RDGDGAAAMRYTEARLAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGA 181

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVG+AT IPSHN++E+  AA+ALI   ++S ++L   + GPD+P GG I+ +   I 
Sbjct: 182 SGIAVGLATEIPSHNLREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIR 241

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
           ++YR GRG  +VRA+W +E++ RG W +VVTE+P      +++E+I EL           
Sbjct: 242 DAYRSGRGSLKVRAKWKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKA 301

Query: 290 -------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                  +    + +L+ +RDES ++  VR+V  PK+R+++   L+  +   + +ET   
Sbjct: 302 LSAEQTQLKTTVLAVLDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSAS 361

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++     P    +  +L EW+  R E + RR+  R+  +  R+ IL+G  +  LNI
Sbjct: 362 INLTMVGADGRPTQKSMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNI 421

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIRN D+PKP ++ RF L++ Q + IL +RLR L +LE  +I+ EL +L  E+ +
Sbjct: 422 DEVIRIIRNADEPKPALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKSLREEQGR 481

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ +LNS       +  EI       + +   G  R T  +  +   A   +  +  EP+
Sbjct: 482 LEEILNSPAALKRTVVKEIE------ADAKTHGDERRTLIQAEKKAVA---EVKVVDEPV 532

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           TVVIS++GW+R+ + H  D +A  FK GD+L       T D +L+  ++G+ Y++    L
Sbjct: 533 TVVISSKGWVRARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVFGSNGRVYSVAVSGL 592

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              RG G+ I  +I+L         F   +   LL+ ++ G   + +  ++ +  R GK 
Sbjct: 593 PGARGDGQPITSMIELESGTQPQHYFAGPADATLLLANTGGYGLLAKAGDLQSRQRGGKG 652

Query: 641 FLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           FL ++  EK     +      +A +    +LL+F++D +    + G+G+ L   +     
Sbjct: 653 FLTLAEGEKPLPPSRADAAGQIACLSLGGRLLVFALDDLKLQPKGGRGLTLMDLEAK--D 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDL-----LGWLGKRGGVGS 738
            ++     +    +  +GR     +  L       + G R   G 
Sbjct: 711 ALVSVAAFDKTLRVLGSGRGGKAKDETLGAAAVAVYKGARARKGK 755


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/775 (35%), Positives = 408/775 (52%), Gaps = 67/775 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-------AF 72
           + L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +           
Sbjct: 18  LDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKP 77

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYT
Sbjct: 78  VKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYT 137

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++  L+L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 138 EARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIP 197

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +V
Sbjct: 198 SHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKV 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKR 294
           RARW +EE+ RG W +VVTE+P  V   +++E+I +                   + A  
Sbjct: 258 RARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASM 317

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P
Sbjct: 318 LAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRP 377

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L+EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+
Sbjct: 378 VQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDE 437

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S     
Sbjct: 438 PKQALIDAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMR 497

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI    + F  +      R T       +K  + +  +  EP TV+IS +GW+R+
Sbjct: 498 RLICKEIEADAKTFGDA------RRTLI---HEEKKVVAEVKVVDEPTTVIISEKGWVRT 548

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H VD   L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  
Sbjct: 549 RQGHGVDAGTLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTT 608

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +I+L     ++  F    + +LL+  S    F     ++++  + GK F+ +   E +  
Sbjct: 609 MIELEAGTQLLYYFAGSESTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCA 668

Query: 653 VVKVTG-----------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
              V G                        HV       ++L F I ++  M + G+G+ 
Sbjct: 669 PSVVHGVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLM 728

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           L S +D     +           +D  GR        L         G RG  G 
Sbjct: 729 LISLEDK--DQLAGAAAYTRSIRLDGVGRGGKARTETLEIRSLNNARGNRGRKGK 781


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 276/770 (35%), Positives = 422/770 (54%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  AA+ALI +  ++   L +YI GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +E++ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQAELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + F        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIVKEIETDAKQFGD-----DRRTLIQE----ERRAAAEVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D    A +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL------LGWLGKRGGVGS 738
             ++  + F    G     +  RS   +E           + GKR   G 
Sbjct: 712 ETLAQALAFGPA-GFVVSGAGPRSGKATEQTFTTTRAQEPYAGKRARKGK 760


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 239/737 (32%), Positives = 403/737 (54%), Gaps = 40/737 (5%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+  Y+ YA+S I  RA+PD+RDG KPV RRI++AM EMG+     ++K ARIVG
Sbjct: 6   EISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD +VYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEAR+ ++A
Sbjct: 66  DVLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L  +D+D VDF   ++    EP V P+K PNLL NG SGIAVGMAT++P HN++E+C
Sbjct: 126 EEMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVC 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +A + NP+I++ +L++Y+  PDFPTGG+IV  R+ ++++Y  G+G   VR R  +E 
Sbjct: 186 DAIIAYLQNPDITVRELMKYVKAPDFPTGGVIV-GRKGLIDAYETGKGKITVRGRVEIEN 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ EIPY V K+RL+EKIAELI + ++   + +RDES  +   ++      +
Sbjct: 245 -----NTIIIREIPYMVNKARLVEKIAELINSGKLEA-KTVRDESDREGIRIVVEVREDI 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           +    ++ ++  ++++T F +    L     P+++ L  +++ ++ HRR V+ RR+ + +
Sbjct: 299 N--TALKKLYAYTNLQTTFGIINLALVDNE-PRILSLKELIECYVEHRRVVVRRRTQYEL 355

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437
           +    R+ I++GL  A  +ID +I +I++     + K  ++ R+ L+E Q DAIL  RL+
Sbjct: 356 KKAKERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMERYELSEVQADAILQTRLQ 415

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  +E   +  E + L+ + ++ + +L S ++    IA E+ E+KE +        RRT
Sbjct: 416 KLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDAIIASELEEIKEKYGDE-----RRT 470

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDS 550
              E+   D     + ++  E   ++++  G+++             V +  +  +  D 
Sbjct: 471 ---EIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIGFKTQHRGGVGVIGIGMRGDDE 527

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
             I +  ++ D++L+ +   KAY L A  +      G G  I++ + +   + IV    +
Sbjct: 528 PAIIVKCNSRDKLLVFTAS-KAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPF 586

Query: 609 DS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            +    +L+++  G       SE     R G       S  K+     + G  V +   N
Sbjct: 587 QNFEGDILILTEDGYIKRTPLSEFENAKRAGIVA----SGGKIAFARHLDGKEVFIATTN 642

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSEND 725
              + F  + +PE  R  KGV+  S + G  I+ + C +    +  + + G    +    
Sbjct: 643 GYAVRFKAEDVPEYGRSAKGVKAISLRQGDSIAWLSCIRGDGDILTLTADGHG--KRTAV 700

Query: 726 LLGWLGKRGGVGSLVPK 742
               L  RG +G +  +
Sbjct: 701 EEYRLVSRGAMGVINAR 717


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 276/770 (35%), Positives = 423/770 (54%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQE----ERRAAAEVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYN------RSENDLLGWLGKRGGVGS 738
             +   + F    G     +  RS         +      + GKR   G 
Sbjct: 712 ETLVQALAFGPA-GFAVSGAGPRSGKAAEQAFTTTRAQEPYAGKRARKGK 760


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/750 (36%), Positives = 409/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 670

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   N +LL FSI ++  M +G+G++L S  +G   + I        T +  
Sbjct: 671 INPDCKVVLASSNHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKGKVL 757


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 271/782 (34%), Positives = 417/782 (53%), Gaps = 57/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M      +  T  +    A+ L    +  YL YALS +K RA+PD+ DG KPV RRI++A
Sbjct: 1   MSDQPTLDFTTAGDAG-DALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 59

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI 
Sbjct: 60  MDRMGLGYSGPTRSTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 119

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR++++  L+L  +DE  VDF   Y+    EP   P++ P
Sbjct: 120 GQGNFGSRDGDGAAAMRYTEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 179

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++EI +A +ALI  P +S + LL  + GPD+P GG I+
Sbjct: 180 FALLNGASGIAVGLATEIPSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQII 239

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE----- 288
            S   I ++YR GRG  +VRARW +E++ RG W +VV E+P  V   R++E+I E     
Sbjct: 240 SSAGDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPK 299

Query: 289 -------------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                         + A  + +L+ +RDES++D  VR+V  PK        L+ ++   +
Sbjct: 300 VKAGKKALSQDQTQLKASMLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHT 359

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R+  + RRS  R+  +  R+ IL+G 
Sbjct: 360 SLETSAPINLTMVGLDGKPVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGR 419

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LNIDE+IAIIR  ++PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 420 QTVLLNIDEVIAIIRAAEEPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELKE 479

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L   + K++ +LN+       +  EI    + F+ +      R T  +  +   A   + 
Sbjct: 480 LRESQGKLEDILNNPGSLRRTMVKEIEADAKTFADA------RRTLIQAEKKAVA---EV 530

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TV++S +GW+R+   H  + ++  FK GD L       T D+++   ++G+ Y
Sbjct: 531 KVVDEPVTVIVSQKGWVRARTGHGHEAASFAFKAGDGLYATFECRTVDQLIGFGSNGRVY 590

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++P   L  GRG G+ +  LI+L     ++  F   ++  LL+ +S G  F+     +++
Sbjct: 591 SVPVAQLPGGRGDGQPVTTLIELESGTQLLHYFAGPASATLLLSNSGGYGFLASVENLVS 650

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR 683
             + GK FL +   E +       G           HVA      ++L F I ++  M+ 
Sbjct: 651 RQKGGKAFLTLGEGETVCPPSHAAGSTGAQPLPPATHVACASAGGRILTFEISELKTMAN 710

Query: 684 -GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGV 736
            G+G+ L   +    ++    +        I+  GR     E  L           RG  
Sbjct: 711 GGRGLMLIDLEPKDQLAGAAAYTRS---VRIEGIGRGGKAREETLEIRSLNNARTARGRK 767

Query: 737 GS 738
           G 
Sbjct: 768 GK 769


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 278/770 (36%), Positives = 425/770 (55%), Gaps = 47/770 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L +Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VVTE+P      +++E+I EL              
Sbjct: 241 ETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++       ++   + +E+   +N+
Sbjct: 301 EQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R E + RR+ +R+  ++ R+ IL+G  +  L I+E+
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  D+PK  ++  F+LT+ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESDEPKAALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E    ++    +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQE----ERRAAAEVKVIDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I       +   +L+ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++    V V  D   VA +  N +LL+F + ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPVAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLL------GWLGKRGGVGS 738
             +   + F    G     +  RS   +E           + GKR   G 
Sbjct: 712 ETLVQALAFGPA-GFAVSGAGPRSGKAAEQAFTTTRAQGPYAGKRARKGK 760


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/782 (31%), Positives = 395/782 (50%), Gaps = 41/782 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL+ G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P+++ EKLLE I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GEAGIREAYITGKG 244

Query: 249 GFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    VEEV  G        I+VTE+PYQV K+  IEK+AEL+   R+  + D+RD
Sbjct: 245 SIVLRGVATVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  +     P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIV-EGQPRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R   L RR S+ +     R+  ++GLL A   +DE+I I+R        K  + SR
Sbjct: 364 FLNFRENTLNRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL++ LR L  LE+  ++ E   L  +   +D LL+  K+    +  ++R
Sbjct: 424 LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKAT-------------LQQAMIEKEPITVVISNR 527
            +K  +           +  E+ +  KA                  +   E   + I++R
Sbjct: 484 SLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDEDTENLSPLEPAEEAILEITHR 543

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           G++R ++            E D +       T   +L+L+  GK Y +  G++    G  
Sbjct: 544 GYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLILTNGGKLYPVKVGDIPPTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +       + + +V+  +        +L++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDG 695
            T LK+  ++++ L      G  + +     +LL FS +   +P M R   + LQ+++  
Sbjct: 664 VTILKLKDDDELLLTQFSKPGQQLILASSGGRLLRFSTNDEQLPIMGRTA-MGLQAFRLL 722

Query: 696 GISDVI-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF---L 751
               ++ C    +    +      Y +           RG +G+   K   ++      +
Sbjct: 723 RNQRMVGCVNAAQAEHLLLVTEEGYAKRLPVNQIKSANRGDLGTQSMKFVNKTDNLAAMV 782

Query: 752 SS 753
            +
Sbjct: 783 GA 784


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 400/759 (52%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+ G+    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVED-GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       +  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   EV+       ++ +I +E + + +S++G+         RS K     ++
Sbjct: 479 -----RRT---EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  + A  T   L ++  G+AY L    L        G  I   ++L   
Sbjct: 531 VSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDT 590

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +     L++ +  G        E    T  +G   +K+   +++     V 
Sbjct: 591 EKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVN 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +   + V  +    + F +  +  M R   GV+    + G  +  V      E    + 
Sbjct: 651 SEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +     L  + +RGG G        ++G  ++
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHF 545
           GR  T F  +   +K     ++  +    V+ +  G I+               + A+  
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKI 637

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A   ++  + +++ +  G A   P  ++     +   +Q  I L    ++V+
Sbjct: 638 EPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQA-IKLQPGDEVVS 696

Query: 605 A--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                     ++L V+ KG              R G     +S   K   VV V      
Sbjct: 697 VDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGD 756

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + + VV  N  ++ F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 757 EEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + F  +T     R    E    D+    + +  ++   +V +  G         +R +  
Sbjct: 621 KEFENATSNRGVRAIKIEPG--DEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  + GD +     +       IL ++  G     P       R  G  ++ +
Sbjct: 679 NAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            D+N    +V         +++VV+  G       SEI    R  K    +   +     
Sbjct: 739 SDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISK 798

Query: 654 VKVTGD 659
           V V  D
Sbjct: 799 VAVVKD 804


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 280/753 (37%), Positives = 425/753 (56%), Gaps = 43/753 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V L    E  YL YA+S +K RA+PD+ DG KPV RRI++AM EMGL   + F KSAR+V
Sbjct: 44  VPLAQYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARVV 103

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD S YD++VRLAQ F  RYPL+ GQGNFG+ DGD++AA RYTEAR+T +
Sbjct: 104 GEVLGKFHPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTPI 163

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A ++L  +D   VD    Y+    EP + P++ P +L NG SGIAVGMAT IPSHN++EI
Sbjct: 164 AAVLLSELDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLREI 223

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA   + NP+ S E++L  I GPD P+G  I+ S   I E YR GRG  ++RARW VE
Sbjct: 224 GGAAALCVRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSVE 283

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELI------------------IAKRIPLLEDI 301
           E+ RG W + V E+P+ V   +++E+I EL                       + +L+ +
Sbjct: 284 ELARGQWRVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDKV 343

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            DES +D  VR+V  PK+     + LM  +   + +E    +NM ++ +   P+   +  
Sbjct: 344 ADESDKDQAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAITD 403

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++EW   R   + RR ++R+  I+ R+ +L+G +  +LN+DE+I IIR  D PK  +++
Sbjct: 404 IIREWAQFRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVALIA 463

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           RF L++ Q + IL +RLR L ++E  +I+ EL  L  E   ++ +L S      ++A EI
Sbjct: 464 RFELSDRQAEDILEIRLRQLARMEGIKIERELKGLQEEGADLNKMLASESLLRRRVAREI 523

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E  + +      G  R T  E +         A +  EP+TV+IS + W R+   H +D
Sbjct: 524 DEDIKAY------GDDRRTLIEQAER---VSLTATVVDEPVTVLISQKYWGRTRIGHGLD 574

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LSA+ FKEGDSL  A    +TD+ +++S++G+  ++P   L  GRG G  +  L++L   
Sbjct: 575 LSAVAFKEGDSLLAAFECRSTDQCIVISSNGRVCSIPVSVLPGGRGDGVPLTTLVELAAG 634

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             IV  F   +   +L+ +S    F+ + S++I   + GK F+ +  +E +   V  T  
Sbjct: 635 AKIVRVFCGAAEQNVLLATSASYGFVCQLSDMIGRNKAGKQFITIEGDELILPPVLYTPS 694

Query: 660 H---VAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               V  V  + +LL F+   +PEM R    G+G+ +   ++G +   +       +T I
Sbjct: 695 EQAQVISVSRSGRLLSFA---LPEMKRLSSGGRGLIVMGLEEGDVLASLMVAEKSKITVI 751

Query: 713 --DSAGR--SYNRSENDLLGWLGKRGGVGSLVP 741
              ++GR  +   SE +LL   GKR  +G ++P
Sbjct: 752 SQTASGREQAIRLSEAELLTHFGKRARMGRMLP 784


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 252/842 (29%), Positives = 405/842 (48%), Gaps = 117/842 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  VS+   LE  YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D    +KK+
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPH D ++YD+LVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A  +L  +DED VDFR  Y+E + EPV+ P++FPNLL NG  G+AVGM+T+IPSHN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A I+ PEI++++L+  I GPDFPTGG+I+     I  ++  GRG   VR R
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGR 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              EE+  G   I++ EIPYQV K++L+E+I EL+  K+I  + D+RDES +    V   
Sbjct: 243 THTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D  +++  +  L+ + T F +N  VL   + P+VM L  I+  ++  R+EV+ RR
Sbjct: 303 LKRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + FR++ I  +  +  G+ IA LNIDE+++II++                          
Sbjct: 362 TRFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMI 421

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                         + LT  QV AIL +RL+ L  LE+ ++++EL++++A   +   +L+
Sbjct: 422 ELVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     + +   + + K   +K       R T  E S  +     +++I KE + V ++ 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKP------RNTAIEQSVDE--IDAESLIPKEEMVVTVTM 533

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+++          K       A   KE D         T   +L  S  GK Y L   
Sbjct: 534 NGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVY 593

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEE 628
            L  G     G ++  +  L+  + I +             +   ++  ++ GN      
Sbjct: 594 KLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNAL 653

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-- 685
           S+       GK  + ++  +++         DHV +     K + F++  + +  RG+  
Sbjct: 654 SDFQYVPSSGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQF-RGRTS 712

Query: 686 -GVRLQSYKDGGISDVICFKICEGLT---------------------------------- 710
            GVR      G    VI   +  G+                                   
Sbjct: 713 DGVRAIRLSAG--DQVISMSVLHGIEASSELKESYLKIPVEARVAASHSGVVSDEVAPML 770

Query: 711 -------------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
                               +      + +  +     +  RGGVG +      R+G  +
Sbjct: 771 EEHAIEREQFLEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVV 830

Query: 752 SS 753
           +S
Sbjct: 831 AS 832



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 16/126 (12%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVG 665
           S   +L V+  G        E    +R G   + +     +   +        D V ++ 
Sbjct: 786 SEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRNGNVVASFPVSQTDQVMLIT 845

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
           +  KL+  ++  I  + R                V  FK  +G   +  A       E D
Sbjct: 846 DKGKLIRIAVTDIRVVGRST------------QGVTLFKTEKGEKVVSVATVVDGSKEED 893

Query: 726 LLGWLG 731
                G
Sbjct: 894 EERPSG 899


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 272/775 (35%), Positives = 408/775 (52%), Gaps = 67/775 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-------AF 72
           + L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +           
Sbjct: 25  LDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKP 84

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYT
Sbjct: 85  VKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYT 144

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++  L+L  +D   VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 145 EARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIP 204

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+  A +ALI  P++  E+LL  I GPD+P GG I+ S   I ++YR GRG  +V
Sbjct: 205 SHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------LIIAKR 294
           RARW +EE+ RG W +VVTE+P  V   +++E+I +                   + A  
Sbjct: 265 RARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASM 324

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES++D  VRIV  PK   +    L+ ++   + +E+   +N+  + +   P
Sbjct: 325 LAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRP 384

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L+EW+A R + + RRS  R++ +  R+ IL+G     LNID++IAIIR  D+
Sbjct: 385 VQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDE 444

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  ++  F+L+E Q + IL +RLR L +LE  +I+ EL  L +E+ K++ +L S     
Sbjct: 445 PKQALIDAFNLSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMR 504

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI    + F  +      R T       +K  + +  +  EP TV+IS +GW+R+
Sbjct: 505 RLICKEIEADAKTFGDA------RRTLI---HEEKKVVAEVKVVDEPTTVIISEKGWVRT 555

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
            + H VD + L FK GDSL       T D++L   ++G+ Y++P   L  GRG G+ +  
Sbjct: 556 RQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTT 615

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           +I+L     ++  F      +LL+  S    F     ++++  + GK F+ +   E +  
Sbjct: 616 MIELEAGTQLLYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCA 675

Query: 653 VVKVTG-----------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
              V G                        HV       ++L F I ++  M + G+G+ 
Sbjct: 676 PSVVHGVPMNARAEHVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLM 735

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
           L S +D     +           +D  GR        L         G RG  G 
Sbjct: 736 LISLEDK--DQLAGAAAYTRSIRLDGVGRGGKARTETLEIRSLNNARGNRGRKGK 788


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/750 (33%), Positives = 406/750 (54%), Gaps = 31/750 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  V +   ++  +L YA+S I  RA+PD RDG KPVHRRI+  M+E+G+ FG+  +
Sbjct: 78  KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 137

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 138 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 197

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 198 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 257

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL +NPEI I  L+E++ GPDFPTG +I+     I ++Y  G+G   +R
Sbjct: 258 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 316

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +EE   G   I+VTEIPY+V+K+ +IEKIAEL+  K+I  + D+RDES+ +   ++
Sbjct: 317 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 376

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++++P +L+  ++  ++++  + +N   L  G  P+V+ L   L+ +L H+ EV+ 
Sbjct: 377 IDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVVT 435

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F +     R+ IL+GL IA  NIDE+IAII+      + +  +  RF+LTE Q  A
Sbjct: 436 RRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTKA 495

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L    +  E+  L  E E+I+ +L +  +    I  E+ E+KE ++   
Sbjct: 496 IVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND-- 553

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               +R T          T  + +I +  I +  S +G+++          +   V +  
Sbjct: 554 ----KRRTQINYEIQGTITD-EDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGT 608

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID---LN 597
           +   + D +   L   T   +LL S   + Y + A  +   S +  G A   +I    + 
Sbjct: 609 MKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVK 668

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + IV+      YD    L   +  G       +E       GK    +   +++   +
Sbjct: 669 EGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERINANGKYAFNLREGDELIRAM 728

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +T +  + +  +  +++ F       +SR   GV+  +  D   +        EG   +
Sbjct: 729 IITDEDLILLANDEERIVKFQAIDFRPISRTATGVKGITL-DSHQTVSSTSTSQEGELIL 787

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               + + +  +  L  L KRGG G     
Sbjct: 788 TIGKKGFGKLTHHSLFRLIKRGGKGVKGIN 817



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 12/253 (4%)

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++  + +   A EI E+         +    +   +      + L     +++      +
Sbjct: 633 SNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHYLFTAT 692

Query: 526 NRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             G I+  +             A + +EGD L  A+     D ILL + + +     A +
Sbjct: 693 KNGIIKKTRLTEYERINANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAID 752

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                     ++  I L+ +Q + +         +L +  KG   +   S      R GK
Sbjct: 753 FRPISRTATGVKG-ITLDSHQTVSSTSTSQEGELILTIGKKGFGKLTHHSLFRLIKRGGK 811

Query: 640 TF--LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD- 694
               +       +     V   D + ++  +   +  +I QI +  R  KGV++ + K  
Sbjct: 812 GVKGINSKLAGDIVFARFVNPQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKR 871

Query: 695 GGISDVICFKICE 707
             I  V   KI E
Sbjct: 872 EEIQAVEIIKIDE 884


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 235/769 (30%), Positives = 405/769 (52%), Gaps = 29/769 (3%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++   +L  + E+ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN+ E+ +  +ALIDNP++  EKL + I GPDFPTGG I+     I E+Y +G+G
Sbjct: 186 TNVPPHNLGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEII-GETGIREAYTIGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GILLRGVATLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++  F   +  +  G+ P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQ-PRQLSLRQLLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L+ R E L RR ++ +     RV +++GLL A  N+D +I I+R        K  + S+
Sbjct: 364 FLSFREETLNRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E Q DAIL + LR L  LE+  ++ E + +  +   ++ LLN  ++    +  ++R
Sbjct: 424 LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQLLNDRRELLKALKKDLR 483

Query: 481 EVKEIFSKS--TDLGRRRTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            +K  +S    T +G  + +  E  +   +    ++    E   +  + RG++R  +   
Sbjct: 484 SLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEAILEFTQRGYVRRTQPSG 543

Query: 538 VDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLL 593
               A +   + D +   +   T   +L+L+  GK Y +  G +    G    G+ +  +
Sbjct: 544 RKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKVYPVNVGEIPPTTGRSPRGKPLITM 603

Query: 594 ID---LNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           +        + +V+ F+      T ++++++ +G    +   E    TR+G T LK+  +
Sbjct: 604 LSNTAQGAQEAVVSRFLLPDNLETQQMILLTKQGRIKRLSLGEFTNLTRRGITILKLKDD 663

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDGGISDVI-CF 703
           +++        G+H+ +     ++L F+ +   +P M R   + LQ+++      ++ C 
Sbjct: 664 DELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGRTA-MGLQAFRLLKNQQMVGCV 722

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + +    +      Y +           RG +G+   K   ++     
Sbjct: 723 TVGKDDHLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFASKTDNLAG 771



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 134/413 (32%), Gaps = 51/413 (12%)

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    ++  PD     I + S ++    +  + +    + ++  L+    +    +  
Sbjct: 402 RVIEILRQA--PDGSTAKINLCSQLDLS-EVQGDAILAMPLRRLTSLEQQNLQQEFEQIS 458

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNI-----DEIIAIIRNEDKPKP------VMVS 419
                    +     R E+LK L     ++     D     I  E K +           
Sbjct: 459 EQISLLEQLLN---DRRELLKALKKDLRSLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEE 515

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN-------------LLAEKEKIDSLLN 466
               +E   +AIL    R   +  +   +                  L   ++ +  +L 
Sbjct: 516 ELKSSEPAEEAILEFTQRGYVRRTQPSGRKSKAENGLHDNDFIIQTVLTDTQKDLL-ILT 574

Query: 467 SGKQQWNQIACEI--REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
            G + +     EI     +    K        T            L    +E + + +++
Sbjct: 575 GGGKVYPVNVGEIPPTTGRSPRGKPLITMLSNTAQGAQEAVVSRFLLPDNLETQQM-ILL 633

Query: 525 SNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           + +G I+ L            ++ L  K+ D L         + ++L S+ G+       
Sbjct: 634 TKQGRIKRLSLGEFTNLTRRGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATN 693

Query: 579 N----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +    ++     G     L+    NQ +V          LL+V+ +G A  +  S++ A 
Sbjct: 694 DEQLPIMGRTAMGLQAFRLL---KNQQMVGCVTVGKDDHLLLVTQEGYAKRMAASQLRAA 750

Query: 635 TRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            R   G   LK    ++    +V+ +    VA+V    +++   ++ +P + R
Sbjct: 751 NRGDLGTQALKFASKTDNLAGMVIAIASGEVALVTNKERVVRIPVETVPILGR 803


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 267/753 (35%), Positives = 440/753 (58%), Gaps = 25/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N+     E  +        E  YL Y++  I +RA+P + DG KPV RRI++AMS++G
Sbjct: 1   MKNNELTSLEGFEKQPFDTFAETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   +  KKSAR VG+V+GK HPHGD + Y+++V LAQPF  RYPL+ GQGN+G   D  
Sbjct: 61  LSSSSKHKKSARTVGDVLGKYHPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+R++  A+++L  +D  A ++   ++   +EP + P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTESRLSTYADILLSELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT IP HN+ E+ +A + L+D+P+ ++++L E+I GPD+PT   I+     I + Y+
Sbjct: 181 VGMATDIPPHNLTEVAQALVHLLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYK 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G  ++RA++ V++       IVVT +P+     +++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGNGRIKMRAKFHVDDGD-----IVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   R+V+ PK R+ +   LM+ +F  +D+E  + +NMN++ +   P+V PL  IL 
Sbjct: 296 SDHEEPTRLVIIPKART-NTTALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILS 354

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWLA R + + +R S R+  ++ R+ +L+GLL A+LNIDEIIAIIRN D+PKPV++ RF+
Sbjct: 355 EWLAFRIDTVRKRISHRLDKVNDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPVLMERFN 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q  AIL ++LR+L KLEE +I++E D+L +E+++++ +L S K+    I  EI+  
Sbjct: 415 LSDRQATAILEIKLRNLAKLEEIKIQAEKDSLDSERQQLEKILASDKRLRTLIKREIQ-- 472

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
               + +   G  R +     +  +A  ++ +I+ EP+TV++S  GW R+ K H +D+  
Sbjct: 473 ----ADAKTHGDLRRSPIFERKEAEAFSEEEVIQIEPMTVILSKNGWARTAKGHDIDIEK 528

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L FK GD L +     +    +   + G++Y++    L S R  GE +   + L     I
Sbjct: 529 LKFKFGDDLLVTAPTMSNRPAVFFDSSGRSYSIATHTLASARTMGEPLTGRLTLKPENHI 588

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
           ++    +     L+ ++ G  FI   S +IA +R GK  L V    +      +     D
Sbjct: 589 ISLVTGEDDDLFLLYTNTGFGFITRFSNLIAKSRTGKAVLTVEEFSEFMAPEPLKNPETD 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFK-ICEGLTWID 713
            +A V  + +L+IF + ++P M +GKG ++           G   +   K + EG   + 
Sbjct: 649 LLAAVTTSGRLIIFPVREMPIMEKGKGNKIIGIPKNQLSVPGTERIKTLKLLPEGAAIVI 708

Query: 714 SAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFP 745
            AG+ +   S  +   +  KRG  G  +P+GF 
Sbjct: 709 YAGKHFLKLSVGNQDNYRSKRGYRGKKLPRGFQ 741


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 275/751 (36%), Positives = 423/751 (56%), Gaps = 35/751 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +   V +    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  G    KS
Sbjct: 39  DADEVKIAEYAERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKS 98

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S Y+++VRLAQ F  RYPL+ GQGNFG+ DGD+AAA RYTEAR
Sbjct: 99  ARVVGDVLGKYHPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEAR 158

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A+L+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVGMAT IPSHN
Sbjct: 159 LTPIADLLLSELDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHN 218

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           ++E+ +AA+AL  NP +  +KLL YI GPDFP GG I+ S   I ++Y  GRG  ++RAR
Sbjct: 219 LKEVAKAAVALAKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRAR 278

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----IIAKR--------------IPL 297
           W +E++ RG W +VV+E P+ V   +++E+I EL    + A +              + +
Sbjct: 279 WSIEQLARGQWQVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSV 338

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           L+ + DES +    R+V  PK+    PD +M  +   + ++    +N+ ++ +   PQ  
Sbjct: 339 LDAVADESDKSQKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQK 398

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L+EW+  R   + RR  +R+  ++ R+ IL G +I YLNIDE+I +IRN D PK 
Sbjct: 399 ALTQVLREWVEFRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPKE 458

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ +F L+E Q + IL +RLR L +LE  +I+ E+  L AE +++  +L S +     +
Sbjct: 459 DLMKKFDLSERQAEDILEIRLRQLARLEGIKIEREIKELKAEAKELKRVLGSEEALRELV 518

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             EI       + +   G  R T  E ++  K T   A +  EP+TV IS R W+R+   
Sbjct: 519 VGEIE------ADAKQYGDERRTLIEEAQITKVT---AQVSDEPVTVFISQRFWVRTRLG 569

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D SA+ FK+GDS+       TTD+ +++ ++G+  ++P   L +GRG G  +   I+
Sbjct: 570 HGIDASAIAFKDGDSIAATYECRTTDQCIVICSNGRVCSIPVSALPTGRGDGAPLATFIE 629

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           L     I  AF   +   +L+ +S G  F     +++   + GK F+ V  E  +  V+ 
Sbjct: 630 LAPGAKIAHAFCGKTETPVLISTSAGYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLL 689

Query: 656 VTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTW- 711
               H  VA + +N +LL+F + ++  +   GKG+ L   K+G             LT  
Sbjct: 690 APTQHSLVAALSKNARLLVFVLSELKLLQGGGKGMMLIDLKEGDELTACTVINTPELTLG 749

Query: 712 --IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             + S  +       +L  + G R   G +V
Sbjct: 750 GTVGSKVQQLKIGGKELQTYFGARAKAGKVV 780


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 264/752 (35%), Positives = 448/752 (59%), Gaps = 29/752 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+   EE YL YA+  I +RA+P++ DG KPV RRI++AMSE+GLD G+ 
Sbjct: 1   MPKDQSNSISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYR 130
           +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+  D  S AA R
Sbjct: 61  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+++T  A L++  +    VD++  ++    EPV+FP+K P +L NGTSGIAVGMAT 
Sbjct: 121 YTESKLTNFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATD 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN+ E+ +A + +++ P+  ++ LL+ I GPDF     IV S E + E Y  GRGGF
Sbjct: 181 IPSHNINEVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308
           +++A+W      +    I++  +PYQ   S+++E+IAE +I K++P++ D+ DE   +  
Sbjct: 241 KIQAQWM-----QDKNQIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDP 295

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +R+V+  K+  ++ + +M  ++  +D++  + +NMN++S+   P+V  L  +LKEW+  R
Sbjct: 296 IRLVITLKSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFR 355

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           ++ L R+   R+  ++ R+ IL+GLL  ++++D++I IIRN D+PK  ++  F L+E Q 
Sbjct: 356 KDTLKRKLEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEPKKELIKAFKLSEIQA 415

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL +RLR L KLE+ +I++E + L+ E++ I+ +L S  +    I  E+ E+KE+F  
Sbjct: 416 NAILEIRLRQLAKLEQLKIENERNELVNERDDIEKILKSKSRLKTLIKNELNEIKELF-- 473

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G  R +    S   K   ++  I  EPITVV+S  GW+RS K H +D + L ++  
Sbjct: 474 ----GEERKSPIINSTNAKIFSEEETIVTEPITVVLSKAGWVRSAKGHEIDPNTLSYRGD 529

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           DSL+      +    + L ++GKAY++ + +L S RG GE I   ++ +     +++ + 
Sbjct: 530 DSLQDFARGRSNQLAIFLDSNGKAYSIQSHSLPSARGMGEPITGRLNADSGVQFISSVIG 589

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGE 666
               K L++++ G  +I E   +I+N + G+ F+K+    KM   + V  +  H+A V  
Sbjct: 590 VEGNKFLIMNTAGYGYISEYQNMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSN 649

Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYN 720
             KLLIF+I+++P + +GKG ++ +     ++           + +  +  I+   RS  
Sbjct: 650 IGKLLIFNIEELPILGKGKGNKIINIPKDKLAAGEEFMAHAQLLADDSSLKIEVGKRSVT 709

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               D   ++  R   G        + GK ++
Sbjct: 710 LKPKDWSEYVLSRAKRGK-------KVGKLIN 734


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/774 (35%), Positives = 425/774 (54%), Gaps = 47/774 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL              
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWIVYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  + PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEDPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI       + +   G  R TF +  R   A   +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIE------TDAKQYGDDRRTFIQEERRAAA---EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  ++L+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRMLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSY-----NRSENDLLGWLGKRGGVGSLV-PK 742
             +   + F    G     +  R         +      + GKR   G  + PK
Sbjct: 712 EALLQAVAFG-AAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTLEPK 764


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 233/715 (32%), Positives = 383/715 (53%), Gaps = 33/715 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E +  V L     + Y++YA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 92  VKERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 151

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY+SLVR+AQ F  RYPL+ G GNFG++D D  AA RYT
Sbjct: 152 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 211

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +AE + L  ++ + VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+I
Sbjct: 212 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 271

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +    +I NPE ++++LLE + GPDFPTGG I+   + I+E+Y+ GRG   
Sbjct: 272 PPHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTIL-GNQGILEAYKSGRGRIV 330

Query: 252 VRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  +E +        I++ EIPYQ  K+ L++KIAEL   K +  + DIRDES    
Sbjct: 331 VRGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTG 390

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    RS DP +++ +++  + +++ F  NM  +  G+ P++M L  IL+ +L  R 
Sbjct: 391 MRVVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFLDFRC 449

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
            V+ RR+ +++     R  I++G++I   N+D +I +IR   N       +V  F L+E 
Sbjct: 450 SVIERRARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKEFDLSEK 509

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +A+L++ L+ L  LE  +   E   L  E  K++ LL+S +  +  I  E  ++K  F
Sbjct: 510 QAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLSSKELIFQLIQQEAADLKNKF 569

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIRS--------LKSHS 537
           S       RR+   +    +   +   +I  E + + I S +G+ +             +
Sbjct: 570 STP-----RRSLIDDSVSCEVDDI--DIIPNEEMLLKILSEKGYAKRMNPNTFSLQHRGT 622

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
           +  S    +  DS    +   T D +L  S  G  Y+  A  +        G  +  L+ 
Sbjct: 623 IGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLP 682

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L+  + I +      +     L++++  G    V  +   +    G   +++   +++K 
Sbjct: 683 LSDGERITSIIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRSTGIISIQLVPGDELKW 742

Query: 653 VVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           V +   D  VA+  +  ++++ S D++  + R  +GV     K+G    +    I
Sbjct: 743 VRRCGNDDLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEG--DKMAAMDI 795


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 217/748 (29%), Positives = 393/748 (52%), Gaps = 23/748 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+
Sbjct: 4   KERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG VIG  HPHGD SVYD+++R +Q +  R+ L+   GN G+IDGD  AA RYTE
Sbjct: 64  KAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ ++  +L+ +++D VDF   +++   EPVV PS+FPNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +AA+  +++P+ +++ L+++I GPDFPTGG  ++  + + ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGG-TIQGVDGLKKAYETGKGKIVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E+V  G   IV+TEIPY+V K+ L++++ EL I K++  + ++RD++      ++
Sbjct: 243 GKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +  NM  +   + P+++ L  +L+ ++ H++EV+ 
Sbjct: 303 VELKKEADSKGILHYLYKNTDLQVSYNFNMVAI-FNKTPKLLGLKHMLEAYINHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +     R  I++GL+ A   +DE+I  IR        K  +   +  TE Q +A
Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   ++ E   L    EK++++L+S K   N+I  E++E+K+ ++++ 
Sbjct: 422 IVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYAEA- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKE 547
                R T  E    D     + +I  E + V ++  G+++     S   S       KE
Sbjct: 481 -----RRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L  +L  +TTD +LL +  G    LP   L     +  G+ +  L+ ++++ DI+TA
Sbjct: 536 TDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVANLVAMDNDDDILTA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                ++ +  +L  +  G       SE  A    K    +K+  ++++  V    G H 
Sbjct: 596 IPVKEFNDSEYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDDEVISVTLSDGTHD 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRS 718
           +         L F+ +++     R  GV+  +  KD  +   + FK            R+
Sbjct: 656 IFFATHTGYGLWFTEEEVSATGQRTAGVKAINLKKDDFVVSCMSFKEESPPDLFLVTQRA 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +     +     R   G ++ K   R
Sbjct: 716 AYKKMKLNVFEKTSRAKRGLVMLKELKR 743


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 399/759 (52%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+ G+    +V+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVED-GKRVKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   E++       ++ +I +E + + +S+ G+         RS K     ++
Sbjct: 479 -----RRT---EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  + A  T   L ++  G+AY L    L        G  I   ++L   
Sbjct: 531 VSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDT 590

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +     L++V+  G        E    T  +G   +K+   +++     V 
Sbjct: 591 EKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVN 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +   + V  +    + F +  +  M R   GV+    + G  +  V      E    + 
Sbjct: 651 SEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +     L  + +RGG G        ++G  ++
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHF 545
           GR  T F  +   +K     ++       V+++  G I+               + A+  
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKI 637

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A   ++  + +++ +  G A   P  ++     +   +Q  I L    ++V+
Sbjct: 638 EPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQA-IKLQPGDEVVS 696

Query: 605 A--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                     ++L V+ KG              R G     +S   K   VV V      
Sbjct: 697 VDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGD 756

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + + VV  N  ++ F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 757 EEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + F  +T     R    E    D+    + +  ++   +V +  G         +R +  
Sbjct: 621 KEFENATSNRGVRAIKIEPG--DEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  + GD +     +       IL ++  G     P       R  G  ++ +
Sbjct: 679 NAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            D+N    +V         +++VV+  G       SEI    R  K    +   +     
Sbjct: 739 SDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISK 798

Query: 654 VKVTGD 659
           V V  D
Sbjct: 799 VAVVKD 804


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 399/759 (52%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+ G+    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVED-GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   E++       ++ +I +E + + +S+ G+         RS K     ++
Sbjct: 479 -----RRT---EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  + A  T   L ++  G+AY L    L        G  I   ++L   
Sbjct: 531 VSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDT 590

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +     L++V+  G        E    T  +G   +K+   +++     V 
Sbjct: 591 EKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVN 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +   + V  +    + F +  +  M R   GV+    + G  +  V      +    + 
Sbjct: 651 SEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEGEILT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +     L  + +RGG G        ++G  ++
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHF 545
           GR  T F  +   +K     ++       V+++  G I+               + A+  
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKI 637

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A   ++  + +++ +  G A   P  ++     +   +Q  I L    ++V+
Sbjct: 638 EPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQA-IKLQPGDEVVS 696

Query: 605 A--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                     ++L V+ KG              R G     +S   K   VV V      
Sbjct: 697 VDVIPPGDEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGD 756

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + + VV  N  ++ F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 757 EEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804



 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + F  +T     R    E    D+    + +  ++   +V +  G         +R +  
Sbjct: 621 KEFENATSNRGVRAIKIEPG--DEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  + GD +         D   IL ++  G     P       R  G  ++ +
Sbjct: 679 NAAGVQAIKLQPGDEVVSVDVIPPGDEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            D+N    +V         +++VV+  G       SEI    R  K    +   +     
Sbjct: 739 SDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISK 798

Query: 654 VKVTGD 659
           V V  D
Sbjct: 799 VAVVKD 804


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 212/755 (28%), Positives = 389/755 (51%), Gaps = 23/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+
Sbjct: 4   KERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKPFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY++++R +Q +  R+ L+   GN G++DGD  AA RYTE
Sbjct: 64  KSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ VDF   +++   EPVV P  +PNLL NG++GI+ G AT IP 
Sbjct: 124 ARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +AA+  +D+P+ S+  LL YI GPDFPTGGI ++  E + ++Y  G+G   +R
Sbjct: 184 HHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGI-IQGIEGLQKAYESGKGKVVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  V+ +      I++TEIPY++ K+ L++K+ EL I K++  + ++RD++      ++
Sbjct: 243 GKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  D   ++  ++  +D++  +  NM  +     P++M L  +L  ++ H++EV+ 
Sbjct: 303 IELKKEADSQGILHFLYKNTDLQVSYHFNMVAIHNK-TPKLMGLKQMLDAYIQHQKEVVT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR++F +     R  I++GL+ A   +DE+IA IR        K  + + +  TE Q +A
Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRLQASYQFTEPQSEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +   ++ E   L    +K++++L S K    +I  E+R +K+ ++   
Sbjct: 422 IVNLQLYRLTNTDITTLEKEAGELRELIKKLEAILESEKNLIKEIKKELRYIKKTYTDE- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKE 547
                R T  E    D     + ++  E + V ++  G+++     S   S       KE
Sbjct: 481 -----RRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYVKRSSIRSYTASNGEEPSMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L   L  +TTD +L  +  G    +P   L     +  G+ I  ++ ++ +  I+ A
Sbjct: 536 TDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPETKWKDGGQHIANIVTMDQDDPIIHA 595

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH- 660
                +     LL  +  G        +  A    K  T LK+ +++++  V    G+  
Sbjct: 596 IPVQEFREDRWLLFATKSGMVKRSVLKDYHAQRHSKALTALKLKTDDELINVYLTNGEEN 655

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           + +  +    L FS +++     R  GV+  + K+G  ++ +  F   +   ++    R+
Sbjct: 656 LFLATKKGYGLWFSEEEVSVTGQRTAGVKGINLKEGDQLAALSVFNNEQKPDFVLVTQRA 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +           R   G ++ K   ++   +++
Sbjct: 716 AVKRMALKSFEKTTRAKRGVIMLKELKKAPHEVAA 750


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 226/736 (30%), Positives = 388/736 (52%), Gaps = 24/736 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +
Sbjct: 132 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A++  PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +R++  +E +
Sbjct: 192 ACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTDIESL 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++    +  D
Sbjct: 251 RGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDAD 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + ++  +F  +D++  +  NM  +     PQ + L  +L  ++ H+REV+  R+ F ++
Sbjct: 311 ANGILAYLFKKTDLQITYNFNMVAIVNK-TPQQLGLKAMLSAYIHHQREVVTHRTQFELE 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+IL L+L  
Sbjct: 370 KAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYR 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +         R +
Sbjct: 430 LTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGID------RRS 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-----LHFKEGDSLKI 553
             +    +     + ++  E + V +SN G+I+     S   S         KEGD +  
Sbjct: 484 VIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKEGDYITR 543

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
               +T + +L+ ++ G+ + LP   +     +  G AI  +I +     IV+      +
Sbjct: 544 LFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNF 603

Query: 609 DSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
           D   K L+ VS KG     +  E +          KV++E+ +  VV       + ++ +
Sbjct: 604 DEAGKSLVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISK 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F+  ++  M R   GVR    +DG       +   +    +      Y +    
Sbjct: 664 EGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLL 723

Query: 726 LLGWLGKRGGVGSLVP 741
           L      RGG G    
Sbjct: 724 LDYPAQSRGGKGMATF 739


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 226/736 (30%), Positives = 388/736 (52%), Gaps = 24/736 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + +R+  Y+   I++RAIPD+RDG KPV RRI++AM + G      ++KSA+ VG+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+Y+ +VR+AQP+   + L+ G GN+G+ D D AAA RYTEAR++ +A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F+D ++    EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +
Sbjct: 132 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVID 191

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +A++  PEI +++++ +I GPDFPTGGII+     + ++YR G+G   +R++  +E +
Sbjct: 192 ACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTVIESL 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPYQV KSRL+  +  + + K++  + ++RDES  +   ++    +  D
Sbjct: 251 RGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDAD 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + ++  +F  +D++  +  NM  +     PQ + L  +L  ++ H+REV+  R+ F ++
Sbjct: 311 ANGILAYLFKKTDLQITYNFNMVAIVNK-TPQQLGLKAMLSAYIDHQREVVTHRTQFELE 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  +L+GL+ A   +DE+IA I   +N    +  +   F  TE Q D+IL L+L  
Sbjct: 370 KAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYR 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE + ++ ELD L  + E + ++L+S K+    I  E+ E++E +         R +
Sbjct: 430 LTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGID------RRS 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-----LHFKEGDSLKI 553
             +    +     + ++  E + V +SN G+I+     S   S         KEGD +  
Sbjct: 484 VIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKEGDYITR 543

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
               +T + +L+ ++ G+ + LP   +     +  G AI  +I +     IV+      +
Sbjct: 544 LFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNF 603

Query: 609 DSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
           D   K L+ VS KG     +  E +          KV++E+ +  VV       + ++ +
Sbjct: 604 DEAGKSLVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISK 663

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
               + F+  ++  M R   GVR    +DG       +   +    +      Y +    
Sbjct: 664 EGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLL 723

Query: 726 LLGWLGKRGGVGSLVP 741
           L      RGG G    
Sbjct: 724 LDYPAQSRGGKGMATF 739



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 25/243 (10%)

Query: 488 KSTDLGRRRTTFCEVSRADKA---TLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLSA 542
           K  D G       +V + D            E     V +S +G ++   LK +    S 
Sbjct: 574 KWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKSLVFVSRKGQVKRTDLKEYVTKRSG 633

Query: 543 LHFKE----GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
                     DS+   + + +   I+L+S +G +       + +       ++ +   + 
Sbjct: 634 AVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDG 693

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           ++ +   +V +   ++L ++  G        +  A +R GK       +E  +  VK  G
Sbjct: 694 DEVVAALWVENDEGEILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEGKR--VKPNG 751

Query: 659 DHVAVV------------GENRKLLIFSIDQIPEMSRGKGVRLQSY--KDGGISDVICFK 704
             +                E+ +      +++P M R    +L +   K+G I D++   
Sbjct: 752 SAIVGAFYCREPLQINAYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQIVDLVSLP 811

Query: 705 ICE 707
             E
Sbjct: 812 HAE 814


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 399/759 (52%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MSEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+AQPF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    EP V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+ G+    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVED-GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       K  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKEEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   E++       ++ +I +E + + +S+ G+         RS K     ++
Sbjct: 479 -----RRT---EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  + A  T   L ++  G+AY L    L        G  I   ++L   
Sbjct: 531 VSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDT 590

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +     L++V+  G        E    T  +G   +K+   +++     V 
Sbjct: 591 EKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVN 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +   + V  +    + F +  +  M R   GV+    + G  +  V      +    + 
Sbjct: 651 SEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEGEILT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +     L  + +RGG G        ++G  ++
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHF 545
           GR  T F  +   +K     ++       V+++  G I+               + A+  
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRGVRAIKI 637

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A   ++  + +++ +  G A   P  ++     +   +Q  I L    ++V+
Sbjct: 638 EPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQA-IKLQPGDEVVS 696

Query: 605 A--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                     ++L V+ KG              R G     +S   K   VV V      
Sbjct: 697 VDVIPPGDEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGD 756

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + + VV  N  ++ F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 757 EEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + F  +T     R    E    D+    + +  ++   +V +  G         +R +  
Sbjct: 621 KEFENATSNRGVRAIKIEPG--DEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDR--ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  + GD +         D   IL ++  G     P       R  G  ++ +
Sbjct: 679 NAAGVQAIKLQPGDEVVSVDVIPPGDEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            D+N    +V         +++VV+  G       SEI    R  K    +   +     
Sbjct: 739 SDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISK 798

Query: 654 VKVTGD 659
           V V  D
Sbjct: 799 VAVVKD 804


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/774 (35%), Positives = 425/774 (54%), Gaps = 47/774 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL              
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L I+++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  ++PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEEPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI    + +        RRT   E    ++    +  I  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIETDAKQYGD-----DRRTLIQE----ERRAAAEVKIVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  +LL+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSY-----NRSENDLLGWLGKRGGVGSLV-PK 742
             +   + F    G     +  R         +      + GKR   G  + PK
Sbjct: 712 EALLQAVAFG-AAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTLEPK 764


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 239/759 (31%), Positives = 398/759 (52%), Gaps = 29/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +    +   L E YL Y++S I  RAIPD+RDG KPV RRI++ M E+GL   +  
Sbjct: 1   MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD  VYD+LVR+A PF  RYPLI GQGNFG+ID D  AA RYT
Sbjct: 61  KKSARIVGEVMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE +L+ ++++ V+  D ++    E  V PSK PNL+ NG SGIAVGMAT+IP
Sbjct: 121 EARLTRLAEEMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  +A + LID+PE ++E+L+++I GPDFPTG ++V + E + + Y  GRG   V
Sbjct: 181 PHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  VE+ G+    IV+TEIPY V K+ LIE+IA++        + +IRDES +    +
Sbjct: 240 RGKVHVED-GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + ++++ +++  + ++  F + M V+   + P++M L G+++ +L HR EV+
Sbjct: 299 VIEIPKDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVI 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RR+ +  +   RR  +++GLL A   I  ++ I+RN       +  ++    +TE Q  
Sbjct: 359 RRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAK 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL++RL  L  LE   +++E  +L+ +  ++  +L   ++    +  E   +K+ +   
Sbjct: 419 AILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLS 541
                RRT   EV+       ++ +I +E + + +S++G+         RS K     ++
Sbjct: 479 -----RRT---EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGIT 530

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599
                E D ++  + A  T   L ++  G+AY L    L        G  I   ++L   
Sbjct: 531 VSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDT 590

Query: 600 QDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           + IV     +     L++ +  G        E    T  +G   +K+   +++     V 
Sbjct: 591 EKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVN 650

Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +   + V  +    + F +  +  M R   GV+    + G  +  V      E    + 
Sbjct: 651 SEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEGEILT 710

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              + + +     L  + +RGG G        ++G  ++
Sbjct: 711 VTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVA 749



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 16/228 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------DLSALHF 545
           GR  T F  +   +K     ++  +    V+ +  G I+               + A+  
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKI 637

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A   ++  + +++ +  G A   P  ++     +   +Q  I L    ++V+
Sbjct: 638 EPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQA-IKLQPGDEVVS 696

Query: 605 A--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                     ++L V+ KG              R G     +S   K   VV V      
Sbjct: 697 VDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGD 756

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           + + VV  N  ++ F + +I  + R  KGV+L    D  IS V   K 
Sbjct: 757 EEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISKVAVVKD 804



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 12/186 (6%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535
           + F  +T     R    E    D+    + +  ++   +V +  G         +R +  
Sbjct: 621 KEFENATSNRGVRAIKIEPG--DEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGR 678

Query: 536 HSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  + GD +     +       IL ++  G     P       R  G  ++ +
Sbjct: 679 NAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI 738

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            D+N    +V         +++VV+  G       SEI    R  K    +   +     
Sbjct: 739 SDVNKTGYVVAVRYVRGDEEIVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELGDDTISK 798

Query: 654 VKVTGD 659
           V V  D
Sbjct: 799 VAVVKD 804


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/766 (33%), Positives = 404/766 (52%), Gaps = 50/766 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V   +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K 
Sbjct: 14  KVIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL+ G GNFG++D D  AA RYTE R
Sbjct: 74  ARVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETR 133

Query: 136 MTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ VA   +L  + E+ V+F   ++    EPVV PS+ P LL NG +GIAVGMAT+IP H
Sbjct: 134 LSPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +ALID P++S+++LLE + GPDFPTG  I+   E I E+Y  GRG   +RA
Sbjct: 194 NLAEVVDALIALIDRPDLSVDQLLELVPGPDFPTG-GIIIGTEGIREAYTTGRGSITLRA 252

Query: 255 RWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
              +EE+  G        I++TE+PYQV KS LIEKIAELI   RI  + D+RDES  + 
Sbjct: 253 VAQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREG 312

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R   P  L++ ++  + ++T F + M  L  G+ P+ M L  +L+ +L  R 
Sbjct: 313 MRIVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQ-PRQMGLKELLEHFLNFRE 371

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
             L RR   ++     R+ +++GLL A  N+D +I ++R        K  + S  +L++ 
Sbjct: 372 HTLTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTLQSELNLSDR 431

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL++ LR L  LE+  +++E D L+ + +++++LL S  +    +  ++R +K  +
Sbjct: 432 QADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLETLLGSRHELLKALKKDLRSLKRQY 491

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +       +R T  +    +     + +     +T+ +S RG++R L+            
Sbjct: 492 AD------QRLTRIQTEA-EPLPSVEELAADTEVTLELSQRGYVRCLRGGERGRRNQARS 544

Query: 547 EG---------------------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           EG                     D +     A  +D +L+ +  GK Y +    +     
Sbjct: 545 EGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFTQSGKGYRVDLTAMPLGDR 604

Query: 584 RGHGEAIQLLID-LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           R  G  +  L+      + IV  F      S  +L+++S++G A  +   +    T +G 
Sbjct: 605 RDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQLVLLSAEGRAKRISLEDFAEVTARGL 664

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGG 696
           +  K+   + +  +  V  +  VA+     +LL F+ D+IP M R   G +     K   
Sbjct: 665 SVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIPLMGRTTLGQQAIRLHKQER 724

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +   I  +  + L  +  + R Y +        LG+ G +G+   +
Sbjct: 725 LVGAIVLQTYDNLLLV--SERGYGKRMPLNAVRLGRLGDLGTTAIQ 768



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 24/242 (9%)

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAM---IEKEPITVVISNRGWIRSLKSHSV----- 538
               D G    T    S   ++ + Q +   +  E   V++S  G  + +          
Sbjct: 602 GDRRDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQLVLLSAEGRAKRISLEDFAEVTA 661

Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
             LS    K+GD L       +   + + ++ G+     +  +    G     Q  I L+
Sbjct: 662 RGLSVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIPLM-GRTTLGQQAIRLH 720

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK-VSSEEKMKLVV 654
             + +V A V  +   LL+VS +G    +  + +        G T ++ V+  + +  + 
Sbjct: 721 KQERLVGAIVLQTYDNLLLVSERGYGKRMPLNAVRLGRLGDLGTTAIQFVAKPDHLAAIA 780

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
               +  V +  +  ++   S+ QIP             KDG    ++  ++ E LT   
Sbjct: 781 PAPSNAEVMLFTDKNRMANLSLAQIPIWG----------KDGSGKLLLNLEVGEKLTSAS 830

Query: 714 SA 715
            A
Sbjct: 831 VA 832


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 273/760 (35%), Positives = 411/760 (54%), Gaps = 47/760 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  +   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTIEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI + +++I   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSL 670

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  +G   + I        T +  
Sbjct: 671 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R           D+    GKRG  G    K    SG+ 
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKG----KVLEISGRL 763


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 234/610 (38%), Positives = 363/610 (59%), Gaps = 23/610 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V  V +   ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E G+     +KKS
Sbjct: 7   KVLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD SVYD++VR+AQ F  RYPLI G GNFG++DGD+AAA RYTE R
Sbjct: 67  ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++AE +L  +D+D VDF   Y+E   EP V P+K PNLL NG++GIAVGMAT+IP HN
Sbjct: 127 MSRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +IDNPE+S+++L+  I GPDFPTGG+I+  R+ I ++Y  GRG  ++RA+
Sbjct: 187 LGEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLIL-GRDGIKQAYTTGRGVIKMRAQ 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IVVTEIPYQV K++L+E IA L+  K I  + D+RDES      V+  
Sbjct: 246 ARVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++ D+++  ++  + ++  F + M  L  G  P+++ L  +L  +L H+++V+ RR
Sbjct: 306 LRRDVNADVILNQLYKHTQLQETFGVIMLALVDG-RPRILNLRDMLHYYLEHQKDVIIRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+GL IA  ++DE+I  IR    P   +  ++++F+L+E Q  AIL
Sbjct: 365 TKFELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAKFALSEKQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I+ E  ++L   E ++++L   ++    I  E+ +VK+ F  +   
Sbjct: 425 DMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDA--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT              + +I  E I + I+++G+++          +     ++ + 
Sbjct: 482 --RRTVIT---SDVSKLEVEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMG 536

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++    A T   IL  +  G+ Y L    L        G AI  L+ +  ++ I
Sbjct: 537 TKEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKI 596

Query: 603 VTAFVYDSTC 612
                   + 
Sbjct: 597 TAVIPIKDSA 606



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 50/152 (32%), Gaps = 7/152 (4%)

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKV 656
            ++           + ++   +    I+++  +    R G     V + +  K+++   +
Sbjct: 440 EEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLI 499

Query: 657 TGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
             + + + +     +    +D      R G+GV     K+   +  +        + +  
Sbjct: 500 ANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFT 559

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           + GR Y     +L      R   GS +    P
Sbjct: 560 NKGRVYRLKGYELPD--AGRTAKGSAIINLLP 589


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 222/709 (31%), Positives = 372/709 (52%), Gaps = 29/709 (4%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG+
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E I GPDFPTG +++  R  I 
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIH 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  G+G   +R+R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  
Sbjct: 180 RAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITA 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES+ +    +    R+   ++++ ++F L+ ++T F  NM  +  G VP+++ L  I
Sbjct: 240 VRDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           +  ++ H++EV+ RR+ F       R  IL+GLL+A  ++DE+I IIRN +     +  +
Sbjct: 299 IDNYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAEL 358

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  
Sbjct: 359 MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 418

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ EVK  ++ +      R T   +     +   + +IE+E + + +SN+G+I+      
Sbjct: 419 EMDEVKRKYADA------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDE 471

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               K     +        D ++  +   T D +L  +  G+ Y L A  +        G
Sbjct: 472 FRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKG 531

Query: 588 EAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
             I  L+ L+  + I T         +       + +G       SE     + G   + 
Sbjct: 532 LPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAIN 591

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V+ +   + V +       + F ++ +  M R   GVR  + ++G    V 
Sbjct: 592 LKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRGVNLREGD-KVVG 650

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +I  G   +    + Y +           RGG G        ++G  
Sbjct: 651 ASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPL 699



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +            + +G ++              L A++ KE D L 
Sbjct: 540 LDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 599

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     + +++ +  G +       + +       ++  ++L     +V A    +  
Sbjct: 600 NVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRG-VNLREGDKVVGASRIVNGQ 658

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG     E SE     R GK      +   +    +LV     + + V+ +  
Sbjct: 659 EVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLARLVTINGNEDIMVITDTG 718

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++        + ++   + E
Sbjct: 719 VIIRTNVANISQTGRSTMGVKVMRL--DQEAKIVTVALVE 756



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 513 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINARKEDVANKYFFFTTQQG 569

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT+  E S               D+      + E E + +  +  G+        +R
Sbjct: 570 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIG-TRTGYSVRFKVNAVR 628

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+
Sbjct: 629 NMGRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 688

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      +    ++V++  G       + I    R   G   +++  E K
Sbjct: 689 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 748

Query: 650 MKLVVKVTGD 659
           +  V  V  +
Sbjct: 749 IVTVALVEQE 758


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 238/753 (31%), Positives = 365/753 (48%), Gaps = 60/753 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  GA   K A+I G
Sbjct: 29  PIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISG 88

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +  G  HPHG+  +Y +LVR+AQ +  R+ LI  QGNFG+I G   AA RYTEAR++ VA
Sbjct: 89  DTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEARLSPVA 148

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            ++L+ ++ D VDF  TY+E + EP V P +FPNLL NG  GIAVGMATSIP HN+ E+C
Sbjct: 149 SMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA + +ID+PE+++ +L E I GPDFPTGG  +  R  I   YR GR    +RA+  +EE
Sbjct: 209 EALVKVIDDPEVTLGELCEIIKGPDFPTGG-TICGRAGIRRGYRDGRSTIVLRAKTRIEE 267

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRS 319
             +  + I++TEIPYQ  + R++EKIAEL+  +RI  +  I D S  ++   ++    R 
Sbjct: 268 HKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKRD 327

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            DP +++  ++  S ++    + +  L  G+ P+ + L  +L+E+L HR  V+ RR+ F 
Sbjct: 328 ADPYVVLNQLYQFSPLQDSISIILLALVDGK-PRELSLKELLEEFLRHRVTVIRRRTQFL 386

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------------- 422
           +    RR   ++GLL+A  NIDEII IIR         V                     
Sbjct: 387 LSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQRALGEEGF 446

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                         LT  Q +AIL + L  L  LE+ ++  E   LL E  +   +L   
Sbjct: 447 AMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRILADE 506

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+  +   +      G  R T             + +I +E + V IS+RG
Sbjct: 507 NIIRAMIKEELIAIAAKY------GDERRTEISGEEIG-DVNLEDLITEETMVVSISHRG 559

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +I+          +     L     ++ D +     A T   +L  +  G+ Y     +L
Sbjct: 560 YIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDL 619

Query: 581 L--SGRGHGEAIQLLIDLNHNQDI---VTAFVYD-STCKLLVVSSKGNAFIVEESEIIAN 634
              S    G AI  L++L+  + I   +    +D     L++ + KG        +    
Sbjct: 620 PELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRP 679

Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
            + G   +K+  ++++  VV    GD V +       + FS      M R   GV+  S 
Sbjct: 680 KKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISL 739

Query: 693 KDGGISDVICFKICE-GLTWIDSAGRSYNRSEN 724
             G    ++   + +   T +      Y +  N
Sbjct: 740 ASG--DSLVGMVVADPDATLLTVCENGYGKRTN 770



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           R  G+ ++ +     N  ++     D T ++L+++++G    +   EI    R   G   
Sbjct: 834 RRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRI 893

Query: 642 LKVSSEEKMKLVVKVTGDH 660
           + +  ++K+  VV+V  D 
Sbjct: 894 MSLDDDDKLVAVVRVPRDE 912



 Score = 44.4 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 629 SEIIANTRKGKTFLKVSS---EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR- 683
           S      R GK    + +      +  V +V   + V ++    KL   +  +I  + R 
Sbjct: 828 SRYRTQRRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRN 887

Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +GVR+ S  D      +     +     D
Sbjct: 888 TQGVRIMSLDDDDKLVAVVRVPRDEAEVTD 917


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/777 (31%), Positives = 399/777 (51%), Gaps = 37/777 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  V    +L  + E+ V+F   ++    EP V P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLAPVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  + LIDNP+++ EKL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIV-GNSGIREAYTTGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G  +R    +EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 GIVLRGVATLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + ++T F   +  L     P+ + L   L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEILQHLYHQTALQTTFGAILLALV-EGQPRQLSLRQTLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R   L RR S+ +   + RV ++ GLL A   +DE+IAI+R        K  +  +
Sbjct: 364 FLNFREHTLNRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E Q DAIL++ LR L  LE+  ++ E D+L  +   +  LL   ++    +  ++R
Sbjct: 424 LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRRLLEDRRELLKALKKDLR 483

Query: 481 EVKEIFSKSTDL-----------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +K  +S                  + TT  E +   K    ++    E   +  + RG+
Sbjct: 484 SLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKLQTPKSEQPPEEAILEFTQRGY 543

Query: 530 IRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R L        A +   E D +       T   +L+L+T GK Y +  G++ +  G   
Sbjct: 544 VRRLSPTGKKPKAENGLHENDFIIQTELTDTEKDLLILNTGGKVYPVKVGDIPAITGRSP 603

Query: 589 AIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGK 639
               LI +       + + +V  FV   T    ++L+++ +G    +   E    +R+G 
Sbjct: 604 RGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQMLLLTKQGRIKRLSMEEFANLSRRGI 663

Query: 640 TFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIF--SIDQIPEMSRGKGVRLQSYKDGG 696
           T LK+  ++++       TG H+ +   + +LL F  + +Q+P M R   + LQ+++   
Sbjct: 664 TILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLPIMGRAA-MGLQAFRLLK 722

Query: 697 ISDVI-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              ++ C  + +    +      Y +           RG +G  + K   ++     
Sbjct: 723 NQQMVGCATVGKDDQLLLVTQEGYAKRIPASNLRAANRGDLGIQMLKFHNKTDNLAG 779



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 17/203 (8%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
              +    ++++ +G I+ L            ++ L  K+ D L       T   ++L S
Sbjct: 631 ETPERSQMLLLTKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILAS 690

Query: 568 TDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           + G+   + +    L         +Q    L + Q +  A V      LL+V+ +G A  
Sbjct: 691 SSGRLLRFAVNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDDQ-LLLVTQEGYAKR 749

Query: 626 VEESEIIANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
           +  S + A  R   G   LK    ++    +V    G  VA+V    +++   +D +P +
Sbjct: 750 IPASNLRAANRGDLGIQMLKFHNKTDNLAGMVRATPGVEVALVSNKERVVRIPVDTVPIL 809

Query: 682 SR-GKG--VRLQSYKDGGISDVI 701
            R  KG  V LQ  +D  I  V+
Sbjct: 810 DRDAKGESV-LQLNRDEKIITVV 831


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/780 (35%), Positives = 420/780 (53%), Gaps = 56/780 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E     SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG   
Sbjct: 12  IPEPADQDSLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPN 71

Query: 73  -------KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                   K AR+VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD 
Sbjct: 72  GATGARPVKCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDG 131

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+ ++  L++  +DE  VDF   Y+    EP   P++ P  L NG SGIAV
Sbjct: 132 AAAMRYTEARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAV 191

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT IPSHN++E+ +A +ALI  P++S E+L   I GPD+P GG I+ S   I  +YR 
Sbjct: 192 GLATEIPSHNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRT 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE----------------- 288
           GRG  +VRARW +EE+ RG W +VV E+P  V   R++E+I E                 
Sbjct: 252 GRGSLKVRARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQ 311

Query: 289 -LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
             +    + +L+ +RDES++D  VR+V  PK        L+ ++   + +E+  P+NM +
Sbjct: 312 VQLKQSMLAVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTSLESSSPINMTM 371

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  +L EW+A R+  + +RS  R+  +  R+ IL+G     LNIDE+IA
Sbjct: 372 IGLDGRPTQKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIA 431

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           IIR  D+PK  +++RFSL++ Q + IL +RLR L +LE  +I+ EL  L  E+ +++ +L
Sbjct: 432 IIRQSDEPKSALIARFSLSDRQAEDILEIRLRQLARLEAIKIEQELKTLREEQGRLEDIL 491

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            +       +  EI    + F+        R T  +  +    ++ +  +  EP+TVV+S
Sbjct: 492 GNPTALRRLMIKEIEADAKQFADP------RRTLIQAEKK---SVLEVKVLDEPVTVVVS 542

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           ++GW+R+   H    S+  FK GD+L       T D +L   ++G+ Y++P   L   RG
Sbjct: 543 SKGWVRARGGHGHAPSSFAFKAGDALYGTFECRTVDTLLAFGSNGRLYSVPVAMLPGARG 602

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ +  LIDL     ++  F   ++  LL+ SS G  F+     +++  R GK F+ ++
Sbjct: 603 DGQPVTTLIDLESGTQLLHYFAGPASAMLLLSSSGGYGFLATVENMVSRNRSGKAFITLA 662

Query: 646 SEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
             E +     V+G           HVA     +++L F I +I +M + G+G+ L   +D
Sbjct: 663 EGETLCRPSHVSGASGSQPLPPATHVACASTGQRILTFDIGEIKQMEKGGRGLMLIDLED 722

Query: 695 -GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGSLVPKGFPRSG 748
              ++    +        I+  GR     E  L           R   G     GF  +G
Sbjct: 723 KDTLAGAAAYTRS---VRIEGIGRGAKPREETLEIRSLNNARTVRARKGKSADLGFKPTG 779


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/750 (37%), Positives = 425/750 (56%), Gaps = 36/750 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 37  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 97  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             AA+AL+DNPE+S  +L+ Y+ GPDFP GG I+   E I+ +Y  GRG  RVRA+W VE
Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W ++VTE+P      +++ +I E                   + +  + LL+ +
Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  D  VR+V  PK+   DPD  +  +   + +E    LN+ ++ +   P    L  
Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EWLA RR  + RR   R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 456

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  LL +       +  EI
Sbjct: 457 AFGLTEVQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHLLATPDALTGLMRDEI 516

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +     +  +     RR+   E+  A++A L Q  I  EP+T+++S +GWIR+   H+VD
Sbjct: 517 QADAAKYGDA-----RRS---EIKAAERAVLTQ-TIADEPVTIILSQKGWIRARVGHNVD 567

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LSAL FK+GD+L   +   T   +++L + G+AYT+    + +GRG G  +  L++L   
Sbjct: 568 LSALSFKDGDALATVVETRTVWPVIVLDSKGRAYTVDPAVVPTGRGDGVPVASLVELQDG 627

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                      + + ++ +S G  FI +  ++    + GK F+ +   E +   + V   
Sbjct: 628 AKPAQLLSGPDSTRFVLANSGGYGFIAKIGDMAGRVKAGKAFMTLEDGESVLAPLHVPAS 687

Query: 660 ------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +    +N +LL F   ++ E+++G+G+ L    +G     I     +      
Sbjct: 688 AKLDALRLVAAADNGRLLAFPAGELKELAKGRGLMLMQLGEGEALTAIGLVGGDKAQLTA 747

Query: 714 SAGRSYNRSEND-LLGWLGKRGGVGSLVPK 742
            + R     E   L  + GKR   G L+PK
Sbjct: 748 QSVRGKQSEEKVALAEYDGKRARRGQLLPK 777


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 276/774 (35%), Positives = 426/774 (55%), Gaps = 47/774 (6%)

Query: 6   ISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +   + L +  E  +A++L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM E
Sbjct: 1   MEQQDILFDPSEPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           MGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  RYPLI GQGNFG+ DG
Sbjct: 61  MGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+T ++ L+L+ +D+  VDF   Y+    EP + P++ P +L NG SGI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT IPSHN++E+  A +ALI + +++   L++Y+ GPDFP GG I+ S   I + Y
Sbjct: 181 AVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------------- 289
             GRG  +VRARW +EE+ RG W +VV E+P      +++E+I EL              
Sbjct: 241 ESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSP 300

Query: 290 ----IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
               +    + LL+ +RDES +D  VR+V  PK++++D      ++   + +E+   +N+
Sbjct: 301 DQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINL 360

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++     P+   L  IL+EW+ +R   + RR+  R+  ++ R+ IL+G  +  L ++++
Sbjct: 361 VMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDV 420

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           I IIR  ++PK  ++  F+L++ Q + IL +RLR L +LE  +I+ EL NL  E+ ++D 
Sbjct: 421 IRIIRESEEPKAALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDV 480

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           LL S      +I  EI       + +   G  R TF +  R   A   +  +  EP+TV+
Sbjct: 481 LLKSETMMRRRIIKEIE------TDAKQYGDDRRTFIQEERRAAA---EVKVVDEPVTVI 531

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAG 578
           +S +GW+R+ + H  D +   FK GD+L       TTD +L+  T      G+ Y++   
Sbjct: 532 VSQKGWVRTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVA 591

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           NL  GRG G  +  LI+L     I   F   +   L++ +  GN F+ +  +++   + G
Sbjct: 592 NLPGGRGDGVPLTTLIELAPGTHIAHTFAGHAEQSLVISTRGGNGFLAKVGDMVGRQKAG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KD 694
           K FL +   ++      V  D   VA + E  +LL+F I ++  + S G+GV L    K+
Sbjct: 652 KAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVILMELEKN 711

Query: 695 GGISDVICFKICEGLTWIDSAGRSY-----NRSENDLLGWLGKRGGVGSLV-PK 742
             +   + F    G     +  R         +      + GKR   G  + PK
Sbjct: 712 EALLQAVAFG-AAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRARKGKTLEPK 764


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 212/744 (28%), Positives = 381/744 (51%), Gaps = 23/744 (3%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K+A+
Sbjct: 8   HDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAK 67

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
            VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEAR++
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLS 127

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT IP H++ 
Sbjct: 128 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +  I  P  S+++L+E I GPDFPTG  I++  + I ++Y  G+G   +R +  
Sbjct: 188 EVIDAVIKRIQMPSCSVDELMEVIKGPDFPTG-GIIQGIDGIRKAYETGKGKIIIRGKAE 246

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E +  G   IV+TEIP++V K+ L++K+ E  I K++  + ++RDE+      V+    
Sbjct: 247 IETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELK 306

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  D   ++  ++  +D++  +  NM  +     P +M L  IL  ++ H++EV+  RS 
Sbjct: 307 KEADAKGILNFLYKNTDLQITYNFNMVAIHNR-RPMLMSLPSILDAYIGHQKEVVTNRSV 365

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  I++GL+ A   +DE+IA IR+       K  +++++  TE Q +AI++L
Sbjct: 366 YELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSL 425

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L   +   +K E + L  + E+++S+L++ K+    I   ++ +K+ ++       
Sbjct: 426 QLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD------ 479

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSL 551
            R +  E    +     + M+  E + V ++  G+++     S    +      K+ D +
Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV-- 607
                 +TTD +LL +  G     P   L     +  G+    LI ++ ++ IV A    
Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599

Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
            +D +  LL  +  G     E +   A    K    L +  E+++  V    G+  + + 
Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVHVTNGESQIFMA 659

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F  D++  +  R  GV+  + K+     V    + +  + +    R   +  
Sbjct: 660 THLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFV-VSGEILQQSDSIVLFTQRGAVKRM 718

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +        R   G ++ +   ++
Sbjct: 719 SLSEFEKTSRAKRGVVMLRELKKN 742



 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E    + ++ G+        +  + + +  +  ++ KE D +        +D I+L +  
Sbjct: 653 ESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQR 712

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           G    +              + +L +L  N   +V  F      +L+  + KG+   ++ 
Sbjct: 713 GAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLEQRLMAETEKGDRKELQA 772

Query: 629 SEIIANTRKGKTFLKVSSEE 648
            E+  N R          EE
Sbjct: 773 KELRTNDRYSNGSFFFDEEE 792


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 225/768 (29%), Positives = 392/768 (51%), Gaps = 31/768 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I+ +  L +  +K V+L   + + +L+YA+S I  RA+PD++DG KPV RRI++ M E+ 
Sbjct: 2   INQNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELS 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   +++KK+ARIVG+V+GK HPHGD S+Y+++VR++Q F  RYPL+ G GNFG+IDG  
Sbjct: 62  VYSNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHK 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE +M ++A  +++ +D++ ++F D Y+  + EP+V P+  PNLL NG +GIAV
Sbjct: 122 AAAMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IP+HN+ E+ +  +A I +  ISI  L++YI GPDFPTG   +   + +  +Y+ 
Sbjct: 182 GMATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPTG-GELLGLKGLENAYKT 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   ++A+  + E  +G   IVVTEIPYQ++KS LIEKIA L+  K I  + D+RDES
Sbjct: 241 GQGSVIIKAKTHILEE-KGKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +     ++    ++ +  +++  ++  S +   F +NM  L   + PQ++ L  IL+ + 
Sbjct: 300 SRQGMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVALVDKK-PQLVSLKTILEAFF 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
             R +V+ ++  F ++    R  ++   L    +I   I +I+N    K      + ++ 
Sbjct: 359 NFRIQVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQYQ 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
               Q  AIL + L+ L   E  ++  E   L  E  +  S++ S  ++   +  E+ E+
Sbjct: 419 FDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAECQSIIESQPKKEKILEKELLEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLK 534
           K+ +        RRT       A      + +IE++ I + I+N+G+I+          K
Sbjct: 479 KKKYQDE-----RRTVL--NFDAALDDKDEDLIEQKEIIITITNKGYIKVTDAEFYRQQK 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQL 592
                 + +   E D ++  L   T + +L  +  G+ Y L     NL      G  +  
Sbjct: 532 RGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSSKGIPLVN 591

Query: 593 LIDLNHNQDIV---TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L++L   + +    +   +D     L   + KG        E       GK  + +  ++
Sbjct: 592 LLNLKPGETLTSCASVKNFDQPDNYLFFATKKGIVKKTSLKEYSNIRENGKIAIVLRDDD 651

Query: 649 KMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKI 705
           ++  V    G  ++ +   N   + F   Q  + SR  +GV     K G  +     F  
Sbjct: 652 EVLTVANTNGRQNIILASNNGNAICFDESQTRKTSRQSQGVIGMDLKKGEFLIGAALFDP 711

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +  + +    + Y +  +     +  R G GS   K   ++G+ ++
Sbjct: 712 NSKDQSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKINSKTGRLIA 759


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 386/743 (51%), Gaps = 23/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFHDLPLEEVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++   EPVV P+ +PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSPIASELLRDLDKKTVEFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  IDNP +++++L+  + GPDFPTGGI ++  E I ++Y  G+G   VR 
Sbjct: 185 HLGEVIDATIMRIDNPSVTVDELMTVVKGPDFPTGGI-IQGVEGIKKAYETGKGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              VE++  G   IV+TE+PY+V K+ L++KI EL   K++  + ++RDE+      V+ 
Sbjct: 244 LAEVEDIRGGKQQIVITEVPYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++  ++  +D++  F  NM  +   + P +M L   L  ++ H++EV+  
Sbjct: 304 ELKKEADANGILNYLYKNTDLQITFNFNMVAI-YKKRPTLMGLPHFLDAYIDHQKEVISN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           RS F +     R  +++GL+ A   +DE+IA IR        K  ++++F+ TE Q +AI
Sbjct: 363 RSRFELNRAKERQHVVEGLMKALSILDEVIATIRASKDKRHAKDNLIAKFTFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E D L  +  +++++L S K+ ++ I  +++ VK++++    
Sbjct: 423 VSLQLYRLTNTDITALQAEADELAKKVAELEAILGSEKKLFSVIKSDLKRVKKLYTNG-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  +    +     + MI  E + V ++  G+++     S    +      KE 
Sbjct: 481 ----RRSKIQDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFGMKET 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +   L  +TT  +LL +  G    LP   L     +  G+ +  ++ ++ ++ I+ A 
Sbjct: 537 DRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDIRWKDMGQHVANIVPIDRDESIIKAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               ++    LL V+  G     E S   A    K    + +  ++++  V    G   +
Sbjct: 597 PVSNFEDPNFLLFVTRNGMVKKTELSAYKAQRYSKPLMAVNLKGDDQVVDVHLTDGAQDI 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSY 719
            +   +   L F+ ++I  +  R  GV+  + KD   +   + FK         +  R  
Sbjct: 657 FLATRSGYGLWFTEEEINVVGARAAGVKGINLKDSDYVVSGLVFKKESKAMLFIATHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G ++ +
Sbjct: 717 VKKLKITEFDKATRAKRGLVMLR 739


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 311/626 (49%), Positives = 434/626 (69%), Gaps = 8/626 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++T++A  +++G+DED+VDFR TY+  + EP V PS  PNLLANG++GIAVGMA
Sbjct: 1   MRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIP HN+ EIC+A   LI  P+  +++L+ ++ GPDFPTGG++VE+  +I E+YR G+G
Sbjct: 61  TSIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKG 120

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FRVRA+W VE++  G + IV+TEIPYQVQK++LIEKIAEL+  K++PLL DIRDESAED
Sbjct: 121 SFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAED 180

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEW 364
           +R+VL P+NR+++ +L+ME +F  +D+E+RF LNMNVL         P VM L  +L+ +
Sbjct: 181 IRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAF 240

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           L HR  VL RR+ FR++ I +R+E+L+G L  Y ++D++I IIR  D+PK  ++  F L+
Sbjct: 241 LDHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPKAELIKTFKLS 300

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AILN+RLRSL KL+E +IK+E   L AEK  +++LL    ++W  IA +  E+++
Sbjct: 301 EVQAEAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEGRRWTTIAAQNAEIRK 360

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F  +T LG+RRT   +          +A +E+E IT+V+S +GWIR+LK HS    AL 
Sbjct: 361 AFGGATALGKRRTELGDAPS-AVVVPIEAYVEREAITMVLSEKGWIRALKGHSDSPDALK 419

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           FKEGD L   L A TTD+IL+ +TDG+ YT+    L SGRGHGE ++L+IDL  + DI  
Sbjct: 420 FKEGDQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAA 479

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
             V+    KLLV ++    F+VEE+E++A TR GK  L     EK K  +   GD VAV+
Sbjct: 480 VLVHKPGRKLLVATNSDRGFVVEENEVLAQTRAGKMVLNCGDGEKAKFCLPFEGDAVAVI 539

Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           GENRKLL+F  D+IP M+RG+GV LQ Y+DGG++D+  F + +GLTW         R+E 
Sbjct: 540 GENRKLLVFMADEIPVMTRGRGVILQKYRDGGMADIKVFTLAQGLTWNLG---DRVRTEA 596

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           DL  WLGKR  VG L P GFPR+ +F
Sbjct: 597 DLTPWLGKRASVGRLPPTGFPRNNRF 622


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 234/758 (30%), Positives = 404/758 (53%), Gaps = 31/758 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ V+L   +++ +L+YA+S I  RA+PD++DG KPV RRI+++M E+G+   A++KK+
Sbjct: 21  KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ G GNFG+IDGD AAA RYTE +
Sbjct: 81  ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++A  +++ +D++ +DF D Y+  + EP+V P+  PNLL NG +GIAVGMAT IP+HN
Sbjct: 141 MAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +  I+N +ISI++L+++I GPDFPTGG ++   +S+  +Y  G+G   ++A+
Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKAK 259

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             V E  RG   I+VTEIPYQV+K+ LIEKIA L+  K +  + D+RDES+     ++  
Sbjct: 260 SHVLEE-RGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIE 318

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  +  +++  ++  S +   F +NM  L  G+ PQ++ L  IL+ +   R EV+ R+
Sbjct: 319 LKRDANAKIILNKLYKHSQLRISFGINMVALV-GKTPQLVSLKQILEAFFNFRIEVINRQ 377

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
            SF ++    R  ++  L+    +I+  I +I+     K      + +++  E Q  AIL
Sbjct: 378 KSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKAIL 437

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            + L+ L   E  ++ +E  NL  E  +  S+++S K++   +  E+ E+K+ +      
Sbjct: 438 EMSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQD---- 493

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544
             R+TT      A      + +IEK+PI + I+N+G+I        +  K     +S + 
Sbjct: 494 -DRKTTL--NFDAPLNFEDEDLIEKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMK 550

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ-- 600
             E D ++      T D  L  +  GK Y L    +     +  G  +   +    ++  
Sbjct: 551 IYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFL 610

Query: 601 -DIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
               +   +D +   L   + KG        E    +++G   +++   +++  V K TG
Sbjct: 611 TSFTSIKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTG 670

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKIC-EGLTWIDS 714
             ++ +   N   + F   +I  +SR   GV       D  +     F +  +    +  
Sbjct: 671 IKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDEFLVGAALFDVDSKEQNILVM 730

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               + +  N     +  R G GS   K   + G+ ++
Sbjct: 731 TENGFGKITNVNQYRIQARSGKGSKTIKVNDQKGRLIT 768



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T  +   + +      + +G ++              L A+  KE D +           
Sbjct: 614 TSIKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKN 673

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSS 619
           I+L S +G A       + S   +   +  +  L  ++ +V A ++D   K   +LV++ 
Sbjct: 674 IILASNNGNAICFCETKIKSISRNSMGVIGM-RLGSDEFLVGAALFDVDSKEQNILVMTE 732

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSI 675
            G   I   ++     R GK    +   ++    + L V +  D + V  +  +++  +I
Sbjct: 733 NGFGKITNVNQYRIQARSGKGSKTIKVNDQKGRLITLQVVLPSDDLIVSSDKGQVVRVAI 792

Query: 676 DQI-PEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
           DQI    ++   G R+   K G  +  +     E L  
Sbjct: 793 DQITKTKNKATQGTRIIKLKTGHKAVSVAVVKKEVLDI 830


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 265/771 (34%), Positives = 408/771 (52%), Gaps = 42/771 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + +++ EN   + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL 
Sbjct: 35  ETPSVLSENDTLI-LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMGLT 93

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
            GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AA
Sbjct: 94  AGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAA 153

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +AEL+L  + +  VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 154 AMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGASGIAVGM 213

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN+ E+ +AA+AL+  P +    L+E+I  PDF  GG I+     + + Y  G+
Sbjct: 214 ATEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQIYETGK 273

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------ 289
           G  RVRAR+ +E + RG W ++VTE+P     ++++ +I E                   
Sbjct: 274 GSVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQLNQDQLN 333

Query: 290 IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
                + L++ +RDES     VR+V  PK+   D D  + ++   + +E    +N+ ++ 
Sbjct: 334 TKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLMNLVMMG 393

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +I
Sbjct: 394 LDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVI 453

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL  
Sbjct: 454 RESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGD 513

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             ++   I  E++   + +      G  R T  E +     T        EP+T+++S +
Sbjct: 514 ENEKKKLIIKEMQADMKQY------GDERRTLVEEAGRAVLT---QTTADEPVTLILSEK 564

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           GWIRS   H++DLS   FKEGD LK  L   T   +++L T G+ YTL A  +  GRG G
Sbjct: 565 GWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVQPVIILDTLGRTYTLDAAEIPGGRGDG 624

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +  LI+L +                L+  S G  FI + +++++  + GK  + + + 
Sbjct: 625 VPVSSLIELQNGAKPAAMLTGVPEQHYLLAGSGGYGFIAKLADMVSRNKNGKVLMTLDAG 684

Query: 648 EKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700
           E +   V V           V +     +LL F + ++  M +G+G++L    D    + 
Sbjct: 685 ETVLPPVPVYASSLINPDCKVVLADSGNRLLAFPLGELKVMPKGRGLQLTPLSDDLRLEH 744

Query: 701 ICFKICEGLTWIDSAGRSYNRSEN-DLLGWLGKRGGVGSLVPKGFPRSGKF 750
           I               R     E   +    GKR   G    K    SG+ 
Sbjct: 745 IAVVSTPEFIVESVGKRGAAHQEKLRIQDIAGKRSRKG----KVLELSGRL 791


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 268/762 (35%), Positives = 415/762 (54%), Gaps = 41/762 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++     ++ + ++L    E  YL YA+S +K RA+P+  DG KPV RRI++AM+EMGL 
Sbjct: 7   DATPPSGDDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAMNEMGLG 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
             A   KSAR+VG+V+GK HPHGDQ+ YD+LVR+AQ F  RYPLI GQGNFG+ DGD AA
Sbjct: 67  NNAKPVKSARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSRDGDGAA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A+L+L  VD   VDF   Y+    EP + P++ P +L NG SGIAVGM
Sbjct: 127 AMRYTEARLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGASGIAVGM 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HN++E+  A + LI +P   ++ ++ ++  PDFP G  I+    ++ E Y  GR
Sbjct: 187 ATDIPPHNIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKEIYAGGR 246

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------ 289
           G  +VRARW +EE+ RG W +VV E+P     ++++E+I EL                  
Sbjct: 247 GSIKVRARWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGLSTEQQN 306

Query: 290 IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           + A+ + +L+ +RDES ++  VR+V  PK+R++  +     +   + +ET   +N+  + 
Sbjct: 307 LKAQVLAMLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSINLVSID 366

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
               P    L  +L +W+  R+  + RRS  R+  ++ R+ +L+G LIA+LNIDE+I +I
Sbjct: 367 NAGRPGQRGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNIDEVIKVI 426

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R  D+PKP ++  F L++ Q + IL +RLR L +LE+ +I+ EL  L  EK  +++LL  
Sbjct: 427 RESDEPKPALIEAFKLSDRQAEDILEIRLRQLARLEKIKIEQELAKLAEEKADLEALLAD 486

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +   +I  EIR+  + +        RRT   E  +       +  + +EP TV++S +
Sbjct: 487 EGKLKTRIIGEIRKDTDTYGD-----DRRTLIEEAEK----ASVEVKVVEEPTTVIVSQK 537

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGR 584
            WIR+ + H  D +   FK GD+L  A    TTD   L       GK +++P      GR
Sbjct: 538 FWIRNRQGHGHDAAQFGFKVGDALYAAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGGR 597

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           G G   Q L++LN    +  A    +T  + +  S    F+     + +  + GK F+ +
Sbjct: 598 GDGIPAQSLVELNGG-SLSHALAAPATQPVFLACSAAYGFLATAGNMESRMKAGKQFISL 656

Query: 645 SSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVI 701
           +  EK+     +  T D VAV+ E+ +  +F +D++ ++   G+GV+L    D       
Sbjct: 657 NPGEKLLSPALLQPTDDRVAVLSESGRFHVFMLDELKQLSGGGRGVQLLPLDDKDTLVAA 716

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGS 738
                     +   GR     E  L        LGKRG  G 
Sbjct: 717 VAFGPADSLVVAGTGRGGKDREEVLKPALLAERLGKRGRKGK 758


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/786 (31%), Positives = 405/786 (51%), Gaps = 48/786 (6%)

Query: 1   MGVD--NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D  +       +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G+   ++ +KS+ IVGE +G  HPHGD ++YD+L R+AQ F  RYPL+ GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+ +AE +L  +D+D VDF+  Y++   EP V PS FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +A + LI+NP+ ++  L+E+I GPDFPTG   +  R +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDATVELIENPDATVADLMEHIKGPDFPTGA-NIVGRNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           + ++Y+ GRG  RVRA + V E       IV+ E+PYQ  K+RLIE+IA+ +   +I  +
Sbjct: 240 VHKAYKTGRGRVRVRADYDVFEE---EGRIVINELPYQENKARLIERIADDVNEGKIEGI 296

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   V+    R +  +++   + + + +E+ F +    L  G+ PQV+ L 
Sbjct: 297 RDIRDESDRDGIRVVIELKRGVMAEVVKNQL-LDNHLESTFGVINLALVDGQ-PQVLTLK 354

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
             L+ +L HRR+V+ RRS + +   + R  IL G L A  NID+++  IRN    D  K 
Sbjct: 355 ETLEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKA 414

Query: 416 VMVS------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            +               F  +E Q + I++++L SL  +E  +I++E +++ A  E++++
Sbjct: 415 ALRGEVEVEVGGEPLPTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLET 474

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    +    I  E+ ++K+ ++       RRT+F           +  +I +E + VV
Sbjct: 475 ILGDQSELDAVIESELLDIKDEYAD-----DRRTSFV---ANTGEVTRADLIPEEDVVVV 526

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +S   +I+                +     KEGD++      +T D +L  +  G+ Y L
Sbjct: 527 VSEDDYIKRMPVSRFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQL 586

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEES 629
            A  +   S    G++   L+D +  ++I      D        L +V+  G        
Sbjct: 587 KAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTD 646

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGV 687
                   G    K+   +++  V    G+   V+G  R + + F  D++  M R  +GV
Sbjct: 647 RFQNILSTGIIATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAMGRSARGV 706

Query: 688 RLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R    + D  ++ V           +      Y +  +        R G G +  K   R
Sbjct: 707 RGIKLEGDDVVAGVAAIDEDHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANER 766

Query: 747 SGKFLS 752
           +G   +
Sbjct: 767 NGPVCA 772



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 16/231 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
           F +            + + E    +++  G+I+           S  + A    EGD L 
Sbjct: 609 FDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGIIATKLDEGDELV 668

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  I L  +  +      D   
Sbjct: 669 DVEVTGGESDLVIGTERGMSIRFDEDEVRAMGRSARGVRG-IKLEGDDVVAGVAAIDEDH 727

Query: 613 K--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGE 666
              +L V+  G     +       +R GK  + + + E+   V  +     GDH+ V+ +
Sbjct: 728 HSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSD 787

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++L   ++ I  + R   GV +    +G   DV    +       +   
Sbjct: 788 EGQILRTPVEDISTVGRNTMGVIVMDLDEG--DDVASVDVIPAAMTTEGEE 836


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/767 (36%), Positives = 423/767 (55%), Gaps = 49/767 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+   ++L    E  YL YA+STI+ RA+PD+ DG KPV RRI+ AM EMGL   A   
Sbjct: 10  EESTDGLTLARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAMHEMGLGPAAKPV 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+V+GK HPHGD + YD++VR+AQ F  RYPL+ GQGNFG+ DGD AAA RYTE
Sbjct: 70  KSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSRDGDGAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+TQ A L+L  +D+  V+F   Y+   +EP + P++ P +L NG SGIAV MAT IPS
Sbjct: 130 ARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGASGIAVAMATEIPS 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA+ALI +P++S E L++ + GPDFP GG I+ S   + E+YR GRG  RVR
Sbjct: 190 HNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAEAYRSGRGSIRVR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295
           AR+ +EE+ RG W +VV E+P+ V   +++E++ EL                    ++ +
Sbjct: 250 ARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKALTPEQLQAKSQIL 309

Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            +++ +RDES  +  VR+V  PK   ++  LL+ ++   + +ET   +N+ +L   + P+
Sbjct: 310 NVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSINLVMLGQDKRPR 369

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              L  IL+EW+  R   + RRS+ R+  ++ R+ IL+G  +  LNIDE+I IIR  D+P
Sbjct: 370 QKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEP 429

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           KP ++  F LTE Q + IL +RLR L +LE  +I+ EL  L  E++K+  LL S      
Sbjct: 430 KPALMQAFGLTERQAEDILEIRLRQLARLEAIRIEQELKELFDERKKLQGLLGSEATLKK 489

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  EI    + +      G  R T  E +       +Q    +EP+TV+IS +GW+RS 
Sbjct: 490 AVIKEIEADIKTY------GDDRRTLIEAAEKAAVEARQV---EEPVTVIISAKGWVRSR 540

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + H  D    +FK GD L  A    TTD++  L+++G+ Y++P   L S RG G  +   
Sbjct: 541 QGHGHDARQFNFKTGDELAGAYEVKTTDQLHALASNGRVYSIPVAGLPSARGDGVPVTSF 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           ++L     I+ AF   +   +L+ + KG        +  +  + GK FL +   +     
Sbjct: 601 VELEAGSQILHAFAAPADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTLEEGDVPLPP 660

Query: 654 VKVTGDH----VAVVG------ENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVI 701
           V          V  +       +  ++L + + ++  + + G+GV L    K   +  VI
Sbjct: 661 VLFDASRTDATVVCLSDGQGGGDKGRVLAYPVSEVKTLHKGGRGVTLMGLEKKEKLRQVI 720

Query: 702 CFKICEGLTWIDSAGR-----SYNRSENDLLGWLGKRGGVGSLV-PK 742
                +    +   GR     S   S  ++    G RG  G  + P+
Sbjct: 721 VA--ADTGLVVTGTGRMAKPQSRTMSTREIAANTGTRGRKGKQLDPR 765


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 268/752 (35%), Positives = 417/752 (55%), Gaps = 39/752 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           ++ L    E  YL YA+S +K RA+P++ DG KPV RRI++AM EMGL  GA   KSAR+
Sbjct: 10  SLPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMKEMGLAAGAKPVKSARV 69

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VGE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T 
Sbjct: 70  VGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A+L+L  +D+  VDF   Y+    EP + P++ P +L NG SGIAVGMAT IP HN+ E
Sbjct: 130 IADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGASGIAVGMATEIPPHNLTE 189

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +  AA+AL+ +P +    L+ Y+ GPDFP GG I+ + + I  +Y  GRG  RVRA+W V
Sbjct: 190 VAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRAAYESGRGSVRVRAQWEV 249

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLED 300
           E++ RG W ++V+E+P      +++ +I +                   +    +  L+ 
Sbjct: 250 EKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKALSQEQQNLKNLMLSQLDR 309

Query: 301 IRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +RDES     VR+V  PK+  L+PD  M  +   + ME    +N+ ++ M   PQ   L 
Sbjct: 310 VRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSMNLVMVGMDGRPQQKGLK 369

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL EWL  R   + RR + R+  +++R+ IL+G  + +L++D +I +IR  D+PKP ++
Sbjct: 370 AILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLDAVIRVIRESDEPKPELM 429

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           + F L+E Q + IL +RLR L +LE ++++ EL  L  E   +  LL S   +   I  E
Sbjct: 430 AAFGLSEIQAEDILEIRLRQLARLEGFRLEKELGELRDEAGGLRHLLASDHARQKLIIKE 489

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           I       + +   G RR +  + +     T     +  EP+T+++S +GW+R+   H V
Sbjct: 490 IE------ADAAKYGDRRRSELKPAEKATLT---QTVADEPVTLILSKKGWLRARVGHHV 540

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           DL+ L FK+GD+L   L   T   +++L + G+AYT+ A ++ +GRG G  +  LID+  
Sbjct: 541 DLATLAFKDGDALAAVLETRTVWPVVVLDSHGRAYTVDAADVPTGRGDGVPVTSLIDVQE 600

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657
              +          + +V  S G  F+VE  ++++  + GK FL + + E     V VT 
Sbjct: 601 QAQVCHMLAAPEDARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLEAHEIPLAPVPVTA 660

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                  +  + +  + L+F   ++  +++G+G+ L    DG   +     + EG     
Sbjct: 661 AGLAAGQLVAISQQARALVFPASELKALAKGRGLMLMQLDDGDTLE--TLAVVEGSAARI 718

Query: 714 SAGRSYNRSEN---DLLGWLGKRGGVGSLVPK 742
                  R ++   +   + GKR   G L+PK
Sbjct: 719 CGTLRTGREDSFRLEFADYAGKRAKKGKLLPK 750


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 221/759 (29%), Positives = 408/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ + +D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGGI V+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGGI-VQGIDGIRKAYETGKGKVIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +  NM  ++    P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT-EGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+I +IRN       K  +V+ +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVATYDFTETQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     N I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHDALLNVIKDELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV- 603
           E D +   +  +T D +++ +  G+   +P   L     +  G+ +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVN 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  + 
Sbjct: 593 CYTVSDFNDEHAIITATRQGMIKKSLLSGFKSTRTSKPLVAMKVKEGDALISVMYVPANA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 ASQCITLLTHRGMSLTYPMSELPDTGLRAAGIKAINLKDEDHV-VLADHIQPQDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +     +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRIGFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/807 (30%), Positives = 411/807 (50%), Gaps = 82/807 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSA
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R++GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA    ++N  ++ ++LL+ I GPDFPTGG+I+   E I  S+  G+G   +R++ 
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFETGKGSIIIRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE       I+V E+PYQV K++LIE IA L+  KR+  + D+RDES ++   V+   
Sbjct: 243 HFEET-ETRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  +F ++ ++T +  NM +L     P +M L  IL  ++AHR+EV+ RR+
Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMMLLDNM-RPTLMSLRDILAAFIAHRKEVISRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            FR+     +  +L  L +A LNIDE++ I+++    +  + +                 
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELLVE 420

Query: 420 ----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S  
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              N I  E+ E+K  + ++      R +   +   +    ++ +IE+E + V  +  G+
Sbjct: 481 VLTNVIVQELNEIKAKYPQA------RKSII-LKNVNAVYAEEDLIEREQVVVTATYSGY 533

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +       A + K  D L       T D IL  S+ GK Y L A  L 
Sbjct: 534 IKRVQISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLP 593

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            G  +  G A+  + DL  ++ I +           L+ ++++G       S+       
Sbjct: 594 IGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPAN 653

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           GK  +K++  + +  V     +  + +   + K + F ++ +  + SR   GV+  +   
Sbjct: 654 GKVAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITL-- 711

Query: 695 GGISDVICFKIC----------------------------EGLTWIDSAGRSYNRSENDL 726
           G     I   I                             E    +      Y +  +  
Sbjct: 712 GKDDSAISLSILNRRILSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSY 771

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  RGGVG +      R+GK +SS
Sbjct: 772 EYRITNRGGVGIINISTSERNGKVVSS 798



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 85/270 (31%), Gaps = 40/270 (14%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  K    +    GR      +++  +  T +           + ++ +G ++      
Sbjct: 587 LKAYKLPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSD 646

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                     A+   + D+L     A   D I + + DGK       +L   +       
Sbjct: 647 FAYVPANGKVAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGV 706

Query: 592 LLIDLNHNQDIVTAFVYD---------------------------STCKLLVVSSKGNAF 624
             I L  +   ++  + +                               +L V+  G   
Sbjct: 707 KAITLGKDDSAISLSILNRRILSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGK 766

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
           I    E     R G   + +S+ E+   VV        +H+ +V    +++      IP 
Sbjct: 767 ITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEASNIPV 826

Query: 681 MSR-GKGVRLQSYK-DGGISDVICFKICEG 708
           + R  +GVRL S + +  ++ V   +  E 
Sbjct: 827 LGRNTQGVRLFSIRAEERVASVTEVEEVED 856


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 409/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 611 PVAMLTGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSL 670

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +        T +  
Sbjct: 671 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHVMVTTSPEFTVVSV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 731 GRRGAEHQEKLRIADID---GKRGKKGKVL 757


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/765 (34%), Positives = 411/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIVKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAG--ES 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL---GKRGGVGSLVP 741
           +    +   L  +  +      +  D +       KRG  G L+P
Sbjct: 711 MTHTAVSSELEILIESEGRRGAAHKDRIPISLLEAKRGKKGRLLP 755


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/756 (33%), Positives = 405/756 (53%), Gaps = 31/756 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+    +   +   +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G+    A+KK
Sbjct: 71  DNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSVAYKK 130

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD AAA RYTEA
Sbjct: 131 SARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMRYTEA 190

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAVGMAT IP H
Sbjct: 191 RMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATKIPPH 250

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ E  + L  NP+IS+++L +++  PDFPTG  I+     I ++Y  GRG F +R+
Sbjct: 251 NLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATIL-GTSGIRQAYETGRGAFVLRS 309

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+      V+F
Sbjct: 310 KAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIRVVF 369

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  ++  +D++  + +NM  L  G +P+V+ L  IL ++L H+ EV+ R
Sbjct: 370 DVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYLLHQEEVVTR 428

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
              F ++    R  IL G+ IA  NIDE+I IIR      + +  +  RF L E Q  AI
Sbjct: 429 GLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFDLNEAQTKAI 488

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++ E ++    
Sbjct: 489 VDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYAD--- 545

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSAL 543
              RRT     S      + + +I+++ + + ++   +I+                 S  
Sbjct: 546 --DRRTEIVHGSI--GQIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTA 601

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              + D+LK  L A T   +L+L++  + + L    +   S +  G     LI +  ++D
Sbjct: 602 TTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDED 661

Query: 602 IVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           IV+  V      D    L+ VS  G       S     ++ G   L +   +++      
Sbjct: 662 IVSLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFIT 721

Query: 657 TGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           T +   ++G  N + + F       +SR   GV+  +  +  +  V      +G T    
Sbjct: 722 TEESEIIIGASNGRSVRFDNQDFRSLSRKSMGVKGITLGENEVV-VGASSTDQGSTVFVL 780

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               Y +  +        RGG G +  K   ++G  
Sbjct: 781 GQEGYGKKTHIDEYRKTARGGKGVITLK-TEKAGNL 815



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 13/252 (5%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  + +     +I ++ +  +K            +         Q+   +     V 
Sbjct: 623 ILTSKARIFRLRTHQIPDLSKQ-AKGVPFINLIPIEKDEDIVSLLVTQENYEDDNLYLVT 681

Query: 524 ISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S  G I+        +     L AL+ KE D L  A        I++ +++G++     
Sbjct: 682 VSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDN 741

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +  S       ++  I L  N+ +V A   D    + V+  +G        E     R 
Sbjct: 742 QDFRSLSRKSMGVKG-ITLGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARG 800

Query: 638 GKTFLKVSSE--EKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           GK  + + +E    +  +  V GD   ++  +   ++  S++Q  ++SR  KGV+L + K
Sbjct: 801 GKGVITLKTEKAGNLAFISCVKGDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLK 860

Query: 694 -DGGISDVICFK 704
               I  V   +
Sbjct: 861 PKDSIQSVAVLE 872


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/771 (35%), Positives = 413/771 (53%), Gaps = 49/771 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M +  + N +         ++L    E  YL YA+S +K RA+P ++DG KPV RRI+ A
Sbjct: 1   MPLKPMFNPSQ------NTLNLAQYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFA 54

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+
Sbjct: 55  MKDMGLTHGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGS 114

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP   P++ P +L NG 
Sbjct: 115 RDGDGAAAMRYTEARLTPLAELLLSEINQGTVDFIPNYDGAFEEPESLPARLPMVLLNGA 174

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT IPSHN+ E+ +AA+AL+ NP ++   L  +I  PDF  G  I+   + I 
Sbjct: 175 SGIAVGMATEIPSHNLGEVAQAAVALLKNPALTTADLHHHIPAPDFAGGAHIITPAKDIA 234

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------- 289
           + Y  G+G  RVRAR+ VE++ RG W +VV+E+P     ++++ +I E            
Sbjct: 235 QIYETGKGSIRVRARYDVEKLARGQWRVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQ 294

Query: 290 -------IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
                       + LLE +RDES     VR+V  PK+  + P+  + ++   + ME    
Sbjct: 295 LNQDQLNTKKLMLDLLEKVRDESDGEHPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVS 354

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           +N+ ++ +   P    L  IL+EWL +R   + RR   R+ A+++R+ IL G +IA+L+I
Sbjct: 355 VNLVMMGLDNRPAQKNLKTILQEWLDYRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHI 414

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           D++I +IR  D+PKP +++ F LTE Q + IL +RLR L +LE  +I+ EL+ L  E   
Sbjct: 415 DQVIKVIREADEPKPELMAAFQLTEIQAEDILEIRLRQLARLEGIKIERELNELREEAGS 474

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           + +LL    ++   I  EI+   + F  +      R T  E +     T        EPI
Sbjct: 475 LKTLLGDENEKRKLIIKEIQADAKQFGDA------RRTLVEAAERATLT---QTTADEPI 525

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           T+++S +GW+R+   H VD + + FKEGD+L+  L   T   +++  + G++YTL A  +
Sbjct: 526 TLILSQQGWLRARAGHGVDAAQIAFKEGDALQQVLETRTVQPVVVWDSHGRSYTLDAAEI 585

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             GRG G  I  LI+L     +V      +    L+    G  FI +  ++    + GK 
Sbjct: 586 PKGRGDGVPIASLIELPSQASVVALLAGAADDYYLLSGCHGYGFIAKLEDLFTRQKAGKA 645

Query: 641 FLKVSSEEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
            L +   E     V++  D        + +   N++LL F + ++  M++G+G++L    
Sbjct: 646 VLTLDDNETALPPVRIANDWLIAPDSRIVLASANKRLLAFPVSEMKIMAKGRGLQLIKLS 705

Query: 694 DGGISDVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLV 740
           DG    +      E  T      R           D+    GKR G G L+
Sbjct: 706 DGDTLALASALTSEHYTLHIIGKRGAIHQETLRIADIA---GKRAGKGKLL 753


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/756 (32%), Positives = 405/756 (53%), Gaps = 31/756 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+    +   +   +L YA+S I  RA+PD+RDG KPVHRRI+H M+E+G+    A+KK
Sbjct: 71  DNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSVAYKK 130

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVYDS+VR++Q F  RYPLI G GNFG+IDGD AAA RYTEA
Sbjct: 131 SARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMRYTEA 190

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A L+++ + ++ VDF   Y+  + EP V P++FPNLL +G SGIAVGMAT IP H
Sbjct: 191 RMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATKIPPH 250

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ E  + L  NP+IS+++L +++  PDFPTG  I+     I ++Y  GRG F +R+
Sbjct: 251 NLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATIL-GTSGIRQAYETGRGAFVLRS 309

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V EIPY+V+K ++IEK+ +L+  K+I  L+D+RDE+      V+F
Sbjct: 310 KAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIRVVF 369

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +   P++++  ++  +D++  + +NM  L  G +P+V+ L  IL ++L H+ EV+ R
Sbjct: 370 DVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYLLHQEEVVTR 428

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
              F ++    R  IL G+ IA  NIDE+I IIR      + +  +  RF L E Q  AI
Sbjct: 429 GLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFDLNEAQTKAI 488

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +++RL  L  L   ++ +E+  L  E E+I S++NS  +    I    +++ E ++    
Sbjct: 489 VDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYAD--- 545

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSAL 543
              RRT     S      + + +I+++ + + ++   +I+                 S  
Sbjct: 546 --DRRTEIVHGSI--GQIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTA 601

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
              + D+LK  L A T   +L+L++  + + L    +   S +  G     LI +  ++D
Sbjct: 602 TTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDED 661

Query: 602 IVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           I++  V      D    L+ VS  G       S     ++ G   L +   +++      
Sbjct: 662 IISLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFIT 721

Query: 657 TGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           T +   ++G  N + + F       +SR   GV+  +  +  +  V      +G T    
Sbjct: 722 TEESEIIIGASNGRSVRFDNQDFRSLSRKSMGVKGITLGENEVV-VGASSTDQGSTVFVL 780

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               Y +  +        RGG G +  K   ++G  
Sbjct: 781 GQEGYGKKTHIDEYRKTARGGKGVITLK-TEKAGNL 815



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 94/252 (37%), Gaps = 13/252 (5%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L S  + +     +I ++ +  +K            +         Q+   +     V 
Sbjct: 623 ILTSKARIFRLRTHQIPDLSKQ-AKGVPFINLIPIEKDEDIISLLVTQENYEDDNLYLVT 681

Query: 524 ISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S  G I+        +     L AL+ KE D L  A        I++ +++G++     
Sbjct: 682 VSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDN 741

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            +  S       ++  I L  N+ +V A   D    + V+  +G        E     R 
Sbjct: 742 QDFRSLSRKSMGVKG-ITLGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARG 800

Query: 638 GKTFLKVSSE--EKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           GK  + + +E    +  +  V GD   ++  +   ++  S++Q  ++SR  KGV+L + K
Sbjct: 801 GKGVITLKTEKAGNLAFISCVKGDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLK 860

Query: 694 -DGGISDVICFK 704
               I  V   +
Sbjct: 861 PKDSIQSVAVLE 872


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 258 ARGQWRVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  F +  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI + ++++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  DG   + +             
Sbjct: 669 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASLEHVLVTTSAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDID---GKRGKKGKVL 755


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 255/849 (30%), Positives = 412/849 (48%), Gaps = 117/849 (13%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN N     NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G
Sbjct: 1   MSNLN-----NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSG 55

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   +KK+AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD 
Sbjct: 56  YDYSKPYKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDP 115

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            A+ RYTEAR+ + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AV
Sbjct: 116 PASMRYTEARLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAV 175

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GM+T+IPSHN+ E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  
Sbjct: 176 GMSTNIPSHNLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMT 234

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V+ +  VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES
Sbjct: 235 GKGTIIVQGKTHVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDES 294

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +    V     + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++
Sbjct: 295 NKMGIRVAIELKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFI 353

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------- 417
            +R+EVL RR+ FR++ +  +  +  G+ IA LNID++I+IIR+                
Sbjct: 354 EYRKEVLTRRTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKW 413

Query: 418 ---------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                                     LT  QV +IL ++L+ L  LE+ +++ +L ++++
Sbjct: 414 SALASVKEMIELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVS 473

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   LL + +     +   + E+K   +        R T  + S  +     + +I 
Sbjct: 474 MIKQYTELLGNKESLLKLVKNGLEEIKAKLAVP------RKTTIDYSHFETDV--EDLIP 525

Query: 517 KEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           KE + V ++  G+I+          +           +E D +      +T   +L  S 
Sbjct: 526 KEDMVVTVTMSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSN 585

Query: 569 DGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSK 620
            G+ Y L    L  G     G ++  +  L+ N+ I +               +L  ++ 
Sbjct: 586 IGRVYKLKVYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATAS 645

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIP 679
           GN      S+       GK  + +   + +  V V    +HV +  +  K + F++  I 
Sbjct: 646 GNLRRNALSDFQYVPSNGKIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIR 705

Query: 680 EMSRGK---GVRLQSY-------------------------------------KDGGI-- 697
           +  +G+   GVR                                         K+ G+  
Sbjct: 706 QF-KGRISDGVRAIRLSSEEDQVISMSVLIAMEVDSETKDLYLKVPLEKRLLVKEDGVIN 764

Query: 698 SDVICFKICEGLT-------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             V    +  GL+              +      + +  +        RGGVG +     
Sbjct: 765 QGVANMLVDLGLSQDVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTT 824

Query: 745 PRSGKFLSS 753
            R+G  +SS
Sbjct: 825 RRNGNVISS 833



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 85/295 (28%), Gaps = 71/295 (24%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI-----SNRGWIR-- 531
           ++  K      T  GR       +S  +  T    + E +  T  +     +  G +R  
Sbjct: 592 LKVYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRN 651

Query: 532 ----SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
                    S    A+   EGD+L         + +L+ +  GK+      N+   +G  
Sbjct: 652 ALSDFQYVPSNGKIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRI 711

Query: 588 EAIQLLIDLNHNQD------IVTAFVYDSTCK---------------------------- 613
                 I L+  +D      ++ A   DS  K                            
Sbjct: 712 SDGVRAIRLSSEEDQVISMSVLIAMEVDSETKDLYLKVPLEKRLLVKEDGVINQGVANML 771

Query: 614 -------------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKM 650
                              +L V+  G        E     R G   + +     +   +
Sbjct: 772 VDLGLSQDVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVI 831

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
                 + DH+ ++    KL+  +++ I  + R  +GV L  +K      V+   
Sbjct: 832 SSFSVESNDHIMLITNKGKLIRIAVNDIRIVGRSTQGVTL--FKTDKQEKVVSVA 884


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/786 (32%), Positives = 406/786 (51%), Gaps = 48/786 (6%)

Query: 1   MGVD--NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
           M  D  +       +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM + G+   ++ +KS+ IVGE +G  HPHGD ++YD+L R+A+ F  RYPL+ GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNF 120

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGD  AA RYTEARM+ +AE +L  +D+D VDF+  Y++   EP V PS FPNLL N
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGM+T+IP HN+ E+ +AA+ LI+NP+ ++  L+E+I GPDFPTG  IV  R +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVA-RNA 239

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           + ++Y+ GRG  RVRA + V E       IV+ E+PYQ  K+RLIE+IA+ +   +I  +
Sbjct: 240 VHKAYKTGRGRVRVRADYDVFEE---EGRIVINELPYQENKARLIERIADDVNEGKIEGI 296

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  D   V+    R    +++   + + + +E+ F +    L  G+ PQV+ L 
Sbjct: 297 RDIRDESERDGIRVVIELKRGAMAEVVKNQL-LDNHLESTFGVINLALVDGQ-PQVLTLK 354

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP 415
             L+ +L HRR+V+ RRS + +   + R  IL G L A  NID+++  IRN    D  K 
Sbjct: 355 ETLEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKA 414

Query: 416 VMVSR------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            +               F  +E Q + I++++L SL  +E  +I++E +++ A  E++++
Sbjct: 415 ALRGEVEVEVDGEPLPTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLET 474

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L    +    I  E+ ++K+ ++       RRT+F           +  +I +E + VV
Sbjct: 475 ILGDQSELDAVIESELLDIKDEYAD-----DRRTSFV---ANTGEVTRADLIPEEDVVVV 526

Query: 524 ISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           +S   +I+                +     KEGD++      +T D +L  +  G+ Y L
Sbjct: 527 VSEDDYIKRMPVSRFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQL 586

Query: 576 PAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEES 629
            A  +   S    G++   L+D +  ++I      D        L +V+  G        
Sbjct: 587 KAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTD 646

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGV 687
                   G    K+   +++  V    G+   V+G  R + + F  D++  M R  +GV
Sbjct: 647 RFQNILSTGIIATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAMGRSARGV 706

Query: 688 RLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           R    + D  ++ V           +      Y +  +        R G G +  K   R
Sbjct: 707 RGIKLEGDDVVAGVAAIDEAHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANER 766

Query: 747 SGKFLS 752
           +G   +
Sbjct: 767 NGPVCA 772



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 16/231 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLK 552
           F +            + + E    +++  G+I+           S  + A    EGD L 
Sbjct: 609 FDDGEEITAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGIIATKLDEGDELV 668

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                     +++ +  G +       + +       ++  I L  +  +      D   
Sbjct: 669 DVEVTDGETDLVIGTERGMSIRFDEDEVRAMGRSARGVRG-IKLEGDDVVAGVAAIDEAH 727

Query: 613 K--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGE 666
              +L V+  G     +       +R GK  + + + E+   V  +     GDH+ V+ +
Sbjct: 728 HSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSD 787

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             ++L   ++ I  + R   G+ +    +G    V    +       ++  
Sbjct: 788 EGQILRTPVEDISTVGRNTMGIIVMDLDEG--DAVASVDVIPAAMTTEAEE 836


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 412/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 20  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 71

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 72  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 131

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 132 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 191

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 192 MATEIPSHNLNEVTQAAIALLKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETG 251

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 252 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 311

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 312 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 371

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 372 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 431

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 432 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 491

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 492 DENEKRKLIVKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 542

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 543 KGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 602

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 603 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADS 662

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 663 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAG--ES 720

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL---GKRGGVGSLVP 741
           +    +   L  +  +      +  D +       KRG  G L+P
Sbjct: 721 MTHTAVSSELEILIESEGRRGAAHKDRIPISLLEAKRGKKGRLLP 765


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 222/760 (29%), Positives = 377/760 (49%), Gaps = 54/760 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++AM  + L+     +K
Sbjct: 163 DQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRK 222

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYD+LVR+AQ FV   PLI G GNFG+ID D AAA RYTE 
Sbjct: 223 CARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTEC 282

Query: 135 RMTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +++ VA+   L  ++ D VD    ++  + EPVV PS+ P LL NG +GIAVGMAT+IP 
Sbjct: 283 KLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPP 342

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A +ALI NP I  ++L   +  PDFPTGG  +       + Y    GG  +R
Sbjct: 343 HNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGG-RIMGLAGARKLYTTSNGGVTLR 401

Query: 254 ARWCVE----EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           A   +E    +       +VVTE+PYQV KS L++++AE++  K++  + D+RDES  D 
Sbjct: 402 ATTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDG 461

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHR 368
             V+    R  +P ++  ++F  + ++T F  NM  L   G  P    L   ++ ++  R
Sbjct: 462 VRVVVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFR 521

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR-FSLT 424
              + RR++F +  +  R  I++G+L A   ID +I ++R        +  +++  + L+
Sbjct: 522 FTTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAEPYGLS 581

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL LRL  L  +EE ++K+E ++L A  E+++ ++N   +  + I  E+ E K 
Sbjct: 582 QEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLEGVMNEDSKVMDIIVEELTEAKN 641

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +       RRT        +    ++ ++  +   VV++  G+I+ +           
Sbjct: 642 KHAVP-----RRTMI---KPDEGELHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQNRG 693

Query: 545 FK---------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593
            +         + D ++        D IL +S  G AY + A  +   S    G  +  +
Sbjct: 694 TRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQVPVGSRTAKGVPVPQV 753

Query: 594 IDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           + +  ++ I +    D       L++++ KG       +   + + +G   + +  ++ +
Sbjct: 754 LPIAGDEQIASVLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTL 813

Query: 651 KLVVKVTGDH-VAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGISDVICFKIC 706
           + V +   ++ + +  +      F  +   +    R  +GV+                  
Sbjct: 814 RWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRGVK-----------------E 856

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           EG + +    R Y +          +RGG G +  K   +
Sbjct: 857 EGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQK 896



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 85/256 (33%), Gaps = 38/256 (14%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA------LHFKEGDSL 551
                 +           E E + + ++ +G+I+     +   ++      +   E D+L
Sbjct: 755 PIAGDEQIASVLAVDDFREDEYLVL-LTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTL 813

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +        + I++ S  G A    A       SGR                   +  V 
Sbjct: 814 RWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGR------------------TSRGVK 855

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAV 663
           +    LLV++++G    V  +E     R GK  + +   +K++  +         D + +
Sbjct: 856 EEGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQKLEDTLACFRIVGADDEIML 915

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSYN 720
                 ++      I   SR   GV +Q     DG     +  +I E      + GR   
Sbjct: 916 STAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVALVPEISEDAA--AATGRPGA 973

Query: 721 RSENDLLGWLGKRGGV 736
            S +D+    G  GGV
Sbjct: 974 SSGDDVGAGSGDAGGV 989


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/807 (30%), Positives = 412/807 (51%), Gaps = 82/807 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V+L   L+  YL+YA+S I  RAIPD+RDG KPVHRRI+++M+E+   +   ++KSA
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R++GEVIGK HPHGD ++YD+LVR+AQ F    PLI GQGNFG+IDGD AAA RYTE R+
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +++ +L  + E++VDFR  Y+  ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA    ++N  ++ ++LL+ I GPDFPTGG+I+   E I  S+  GRG   +R++ 
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFESGRGSIIIRSKT 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             EE   G   I+V E+PYQV K++LIE IA L+  KR+  + D+RDES ++   V+   
Sbjct: 243 HFEETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++  +F ++ ++T +  NM +L     P +M L  IL  ++AHR+EV+ RR+
Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNM-RPTLMSLRDILAAFIAHRKEVISRRT 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----------------- 419
            FR+     +  +L  L +A LNIDE++ I+++    +  + +                 
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVE 420

Query: 420 ----------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                      + L+  Q  AIL ++++ +   E+ Q+ +E+   +   ++  S+L S  
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              N I  E+ E+K  + ++      R +   +   +    ++ +IE+E + V  +  G+
Sbjct: 481 VLTNVIVRELNEIKAKYPQA------RKSII-LKNVNAVYAEEDLIEREQVVVTATYSGY 533

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           I+          +       A + K  D L       T D IL  S+ GK Y L A  L 
Sbjct: 534 IKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLP 593

Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            G  +  G A+  + DL  ++ I +           L+ ++++G       S+       
Sbjct: 594 IGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPAN 653

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKD 694
           GK  ++++  + +  V     +  V +   + K + F +  +  + SR   GV+  +   
Sbjct: 654 GKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITL-- 711

Query: 695 GGISDVICFKIC----------------------------EGLTWIDSAGRSYNRSENDL 726
           G   + I   I                             E    +      Y +  +  
Sbjct: 712 GKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSY 771

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +  RGGVG +      R+GK +SS
Sbjct: 772 EYRITNRGGVGIINISTSERNGKVVSS 798



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 40/270 (14%)

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRSLKSHS 537
           ++  K    +    GR      +++  +  T +           + ++ +G ++      
Sbjct: 587 LKAYKLPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSD 646

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                     A+   + D+L     A   D + + + DGK      G+L   +       
Sbjct: 647 FAYVPANGKVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGV 706

Query: 592 LLIDLNHNQDIVTAFVYD---------------------------STCKLLVVSSKGNAF 624
             I L  + + ++  + +                               +L V+  G   
Sbjct: 707 KAITLGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGK 766

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPE 680
           I    E     R G   + +S+ E+   VV        +H+ +V    +++    + IP 
Sbjct: 767 ITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIPV 826

Query: 681 MSR-GKGVRLQSYK-DGGISDVICFKICEG 708
           + R  +GVRL S + +  ++ V   +  E 
Sbjct: 827 LGRNTQGVRLFSIRAEERVASVTEVEEVED 856


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 258 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI +  +++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +             
Sbjct: 669 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDIE---GKRGKKGKVL 755


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 232/842 (27%), Positives = 396/842 (47%), Gaps = 105/842 (12%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +N ++     ++ +  + ++  ++  YL YA+S I  RA+PD+RDG KP  RRI+ AM+
Sbjct: 7   DENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMN 66

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           ++ L    +  K ++I GE +G  HPHGDQ++Y +LVR+AQ +  R  LI  QGNFG++ 
Sbjct: 67  DLNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLA 126

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G   AA+RYTEAR++ VA  +L  +  + VDF  TY++   EP V PS+FPNLL NG+SG
Sbjct: 127 GLPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSG 186

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMATSIP HN+ E+ EA   +ID PE +I+++ + + GPDFPTGG+I   +    + 
Sbjct: 187 IAVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVIC-GQFGTRQG 245

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GR    +RA+    +  + S  IVVTEIPY   + R+ EK+  L+  +R+  +  + 
Sbjct: 246 YSTGRSTITLRAKTHF-DTEKQSDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVV 304

Query: 303 DESAEDV----RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D +   +      +     R  D ++++  ++  S ++T F + +  L  G  PQ++ + 
Sbjct: 305 DLTDRKIPNWQVHLQIVLKRDADKEVVLNQLYKYSPLQTTFSIILLALV-GNRPQLLSIK 363

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPK- 414
            +L E++ HR  V+ RR+  ++    +R   ++G+LIA LNIDE+I+ IRN     + K 
Sbjct: 364 DMLLEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKN 423

Query: 415 ---------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                            +SL+ NQ +AI++++L SL  LE  ++
Sbjct: 424 RLRDIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKL 483

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             E   LL E ++   LL+        +  E+ +++  +        RRT   E+   D 
Sbjct: 484 GDEHRKLLEEIDECLHLLSDEAHIRAAVREEMDDLQRKYPDK-----RRTEISEIELTD- 537

Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559
              +  +I + P+ V ++ RG+I+                ++     E D ++    A T
Sbjct: 538 -VNKDELIAEAPMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVAST 596

Query: 560 TDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKL 614
              +L  +  G+ Y     +L   +    G A+  L+ L   +++   +    +D    L
Sbjct: 597 HSYLLFFTNLGRVYWQKVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFDDERFL 656

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673
           ++ + KG       S      R G   +K+  ++++  VVKV   D + +   N   + F
Sbjct: 657 MMATKKGVVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRF 716

Query: 674 SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSE-------- 723
           + D    M R  +GV+  S  KD  +  ++     E +  + +    Y +          
Sbjct: 717 NHDDARAMGRNTRGVKGVSLGKDDHVVGMVVAD--EQMCLLTACENGYGKRTPFGFGGAS 774

Query: 724 ----------------------------------NDLLGWLGKRGGVGSLVPKGFPRSGK 749
                                             +++     KRGG G    +   R+GK
Sbjct: 775 DAEEAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKRGGKGLRDIRTTERNGK 834

Query: 750 FL 751
            +
Sbjct: 835 AV 836



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 58/238 (24%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
             + E   ++ + +G ++     +        + A+   + D L   +     D +++ +
Sbjct: 649 EFDDERFLMMATKKGVVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIIST 708

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            +G +      N    R  G   + +  + L  +  +V   V D    LL     G    
Sbjct: 709 ANGMSIR---FNHDDARAMGRNTRGVKGVSLGKDDHVVGMVVADEQMCLLTACENGYGKR 765

Query: 626 VEES------------------------------------------EIIANTRKGKTFLK 643
                                                               R GK    
Sbjct: 766 TPFGFGGASDAEEAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKRGGKGLRD 825

Query: 644 VSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           + + E+    + ++     D V ++    K+       I ++ R  +GVR+    DG 
Sbjct: 826 IRTTERNGKAVDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGD 883


>gi|332529074|ref|ZP_08405039.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
 gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/771 (34%), Positives = 415/771 (53%), Gaps = 66/771 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA----AFKKSAR 77
           L    +  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +         KSAR
Sbjct: 19  LANYAQRAYLEYALSVVKGRALPDVSDGQKPVQRRILYAMERMGLGYSGNTAAKPVKSAR 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+ 
Sbjct: 79  VVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTEARLA 138

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +++ L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IPSHN+ 
Sbjct: 139 KISSLLLDEIDEGTVDFMPNYDGSTEEPKQLPARLPFTLLNGASGIAVGLATEIPSHNIS 198

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A +ALI  P++  E+L E + GPD+P GG I+ +   I E+YR GRG  +VRARW 
Sbjct: 199 EVAAACVALIKTPKLKDEELFELLPGPDYPGGGQIISAEADIAEAYRTGRGSLKVRARWK 258

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLE 299
           +EE+ RG W +VVTE+P  V   +++E+I EL                  + +  + +L+
Sbjct: 259 IEELARGQWQLVVTELPPGVSTQKVLEEIEELSNPKVKAGKKTVTQEQTQLKSTLLSVLD 318

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES++D  VR+V  PK   +D + L+ ++   + +ET  P+N+ ++ +   P    +
Sbjct: 319 GVRDESSKDAPVRLVCEPKTSKIDQNELITTLLAHTSLETSAPINLTMVGLDGKPVQKSM 378

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L+EW+A RR+ + RRS  R+  +  R+ IL+G     LN+DE+I IIRN D+PKP +
Sbjct: 379 RQMLEEWIAFRRQTIARRSQHRLGKVQDRIHILEGRQTVLLNVDEVIKIIRNSDEPKPAL 438

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + RF L++ Q + IL +RLR L +LE  +I+ EL  L  +++++  +L S       +  
Sbjct: 439 IKRFRLSDRQAEDILEIRLRQLARLEAIKIEQELAELRGKEKELQDILGSPAALRKLMVK 498

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI    + F  +      R T  +  +   A   +  +  EP+TVV+S +GW+R+ + H 
Sbjct: 499 EIEADAKAFGDA------RRTLIQAEKKAVA---EVKVIDEPVTVVVSQKGWVRARQGHG 549

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
            D ++  FK GD L       T D +L   ++G+ Y++P   L   RG G+ +  +++L 
Sbjct: 550 HDAASFAFKAGDGLYGTFECRTVDVMLAFGSNGRVYSVPVSALPGARGDGQPLTTMVELE 609

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV--- 654
               +V  +   ++  LL+ +S G  F+ +   +++  + GK F+   S+     V    
Sbjct: 610 AGTQLVHYYAGPASAWLLLSTSGGYGFLAQVEHMVSRQKGGKAFINCGSDGTPDTVCRPS 669

Query: 655 ------KVTG--------------DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
                   TG               HV  V    ++L F I ++  M S G+G+ L   +
Sbjct: 670 MAHAPNPATGVVASAAEGGLHSPASHVVCVSTGGRILSFQIGELKPMPSGGRGLMLIDLE 729

Query: 694 -DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGS 738
               ++    +        I+  GR     +  L           RG  G 
Sbjct: 730 PKDQLAGAAAYTRS---VRIEGLGRGGKERDETLEIRSLNNAKAARGRKGK 777


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/776 (32%), Positives = 413/776 (53%), Gaps = 47/776 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +K V++   L+  YL YA+S I  RA+PD+RDG KPVHRRI+ AM  +  ++   +
Sbjct: 4   IAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD +VYDS+VR+AQ F  RY LI GQGNFG+IDGD AAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A  +L  ++++ +DF   Y+  +  P + P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 124 EIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+    +A + NP IS+++L+ YI GPDFPT GI +  +  I E+Y+ G+G   V
Sbjct: 184 PHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGI-IYGKNGIKEAYKTGKGKIIV 242

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+++ +E         +++ E+PYQV KS+LIEKIA L+  K+I  + +IRDES +D   
Sbjct: 243 RSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +     +++  ++ L+ ++T F +NM  LS G+ P+ M L  ILKE++ HR+++
Sbjct: 303 IVIDIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGK-PKTMNLKKILKEFIKHRKKI 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------EDKP 413
           + R+  F+++  ++++ +L+G  IA  NI+ II +I+N                  E+  
Sbjct: 362 IKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKENNS 421

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                  F  +  Q  AILN++L  L  LE+ +I  E + L+ +  K+  +L++      
Sbjct: 422 SKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILEK 481

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS- 532
           +I  E+ E+K+ FS         T   ++         + MI KE + V +S  G+++  
Sbjct: 482 KIEKELNEIKKKFSD--------TRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQ 533

Query: 533 -------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
                   K      SA   KE D +   L A++ D IL  S+ G  Y +    L   S 
Sbjct: 534 PISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSR 593

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G+ I  L+ L   + I T      Y S+  + + ++ G        +       G  
Sbjct: 594 NARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALGFVKKTSLIQFKKPRNSGII 653

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGI 697
            + +   +K+  V   TG +++ +     K++ FS   I +M R   G+R      +  +
Sbjct: 654 AINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIRGMKITNNDRL 713

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             ++     + +  + + G  Y +  N     +  R   G L  +   ++G  + +
Sbjct: 714 VSLLVPNKKDDILIVTANG--YGKRTNINQFPIKSRATKGVLSIRVTQKNGVVIGA 767



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 63/167 (37%), Gaps = 6/167 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           I+  K  +  + A++ ++ D L         + I + ++ GK        +         
Sbjct: 642 IQFKKPRNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASG 701

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           I+ +  + +N  +V+  V +    +L+V++ G       ++    +R  K  L +     
Sbjct: 702 IRGM-KITNNDRLVSLLVPNKKDDILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQK 760

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +   +  +     D + ++     L+   + +I  + R  +GV L  
Sbjct: 761 NGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILKRNTQGVILIR 807


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/760 (35%), Positives = 408/760 (53%), Gaps = 47/760 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 20  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 79

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 80  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 139

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 140 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 199

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 200 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 259

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 260 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 319

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 320 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 379

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 380 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 439

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   +  E++ 
Sbjct: 440 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQA 499

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + +  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 500 DMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 550

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  I  LI+L +   
Sbjct: 551 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAK 610

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            +           L+  S G  FI +  +++   + GK  + V S E +   V V     
Sbjct: 611 PIAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 670

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 V +   + +LL FSI ++  M +G+G++L S  DG   + +             
Sbjct: 671 INPDCKVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASLEHVLVTTAAEFIVETV 730

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R           D+    GKRG  G    K    SG+ 
Sbjct: 731 GKRGAAHQEKLRICDID---GKRGKKG----KVLEISGRL 763


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 406/750 (54%), Gaps = 43/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 18  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 78  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 138 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 198 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 257

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 258 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 317

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 378 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 497

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 498 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 548

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 608

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI +  +++   + GK  + V S E +   + V     
Sbjct: 609 PVAMLTGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSL 668

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 + +   + +LL FSI ++  M +G+G++L S  +G   + +             
Sbjct: 669 INPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFIVETV 728

Query: 715 AGRSY----NRSENDLLGWLGKRGGVGSLV 740
             R           D+    GKRG  G ++
Sbjct: 729 GKRGAAHQEKLRICDIE---GKRGKKGKVL 755


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 408/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPISLLE--AKRGKKGKLLP 753


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/776 (35%), Positives = 413/776 (53%), Gaps = 47/776 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++   TL       + L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MG
Sbjct: 1   MNEQATLSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD 
Sbjct: 61  LTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAV
Sbjct: 121 AAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  
Sbjct: 181 GMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---------------- 289
           G+G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                 
Sbjct: 241 GKGSVRVRARYEIEKLARGQWRMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQ 300

Query: 290 --IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                  + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 301 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 360

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 361 MGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 420

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 421 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 480

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +      R T  E +     T        EPIT+++S
Sbjct: 481 GDENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILS 531

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRG 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+  S G  FI +  +++   + GK  + V 
Sbjct: 592 DGVPVSSLIELQNGAKPVAMLTGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVD 651

Query: 646 SEEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   + V           + +   + +LL FSI ++  M +G+G++L S  DG   
Sbjct: 652 SGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDGASL 711

Query: 699 DVICFKICEGLTWIDSAGRSY----NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +          T      R           D+    GKRG  G    K    SG+ 
Sbjct: 712 EHTAVISSAEFTVETVGRRGAVHQERLRIRDID---GKRGKKG----KVLEISGRL 760


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/782 (35%), Positives = 415/782 (53%), Gaps = 56/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++    +    E+   + L    +  YL YALS +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G           KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D+  VDF   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++EI +A +AL+ NP+++ E+L   + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---- 289
            S   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL    
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 290 --------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                         + A  + +L+ +RDES++D  VRIV  PK   +    L+ ++   +
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R++ + RRS  R+  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LNIDE+IAIIR  D+PK  ++ RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 421 QTVLLNIDEVIAIIRASDEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +  EI    + F+ +      R T  +    DK    + 
Sbjct: 481 LREEQGKLEDILANPASLRRLMVKEIEADAKQFADA------RRTLIQA---DKRATAEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  D     FK GD+L       T D ++   ++G+ Y
Sbjct: 532 KVVDEPVTVVVSQKGWVRARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ I  LIDL      V  F   +   LL+  S G  FI     + A
Sbjct: 592 SVAVSQLPGARGDGQPITTLIDLEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTA 651

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT----------GDHVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++                   HV       ++L F I ++ +M+ 
Sbjct: 652 RNRGGKAFVSLGEGEQLCRPSHAAFTSGSQPLAPATHVCCASAGGRILTFEITELKQMAN 711

Query: 684 -GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK-----RGGV 736
            G+G+ L   +    ++    +        I   GR     +  L           RG  
Sbjct: 712 GGRGLMLIDLEPKDTLAGAAAYTRS---VRIAGVGRGGKERDETLEIRSLNNARFPRGRK 768

Query: 737 GS 738
           G 
Sbjct: 769 GK 770


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/756 (32%), Positives = 406/756 (53%), Gaps = 40/756 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN ++S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES ++   V+
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ 
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVII 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +A
Sbjct: 365 RRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANA 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F    
Sbjct: 425 ILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP- 483

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                     ++         + +I  E + V I++RG+I+          K       A
Sbjct: 484 -------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLA 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +   + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L   +
Sbjct: 537 VTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEE 596

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I+       +D +  L   +  G       SE       G   + ++  +++   + V 
Sbjct: 597 KIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSIGVRAINLNENDELVTAIIVQ 656

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            D   +            + +          +++  D  + +       +G        +
Sbjct: 657 RDEDEIFASGG------EENLENQ------EIENLDDENLENEESAS-TQGKMLFAVTKK 703

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      R   G    K   ++ + + +
Sbjct: 704 GMCIKFPLVKVREIGRVSRGVTAIKFKEKNDELVGA 739



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP----- 519
           L + ++    I     +  +     T  G  + T     +  ++   +A+   E      
Sbjct: 592 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSIGVRAINLNENDELVT 651

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         S    +++   +   + ++L+    A T  ++L  ++  G     P 
Sbjct: 652 AIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESASTQGKMLFAVTKKGMCIKFPL 711

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L VS+KG        E    +R
Sbjct: 712 VKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSVSAKGIGKRTNAGEYRLQSR 771

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 772 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 827


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 409/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 653 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 712

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 713 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 755


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 230/749 (30%), Positives = 399/749 (53%), Gaps = 25/749 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L+E YL+Y++S I  RAIPD+RDG KPV RRI+++M E+G+     FKKSARIVG
Sbjct: 6   PIEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVG 65

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD ++YD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTEAR+ ++A
Sbjct: 66  EVMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIA 125

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D++ V+  D ++    EP V PSKFPNLLANG++GIAVGM T+IP HN+ E+ 
Sbjct: 126 EELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELV 185

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
              +ALI NPEISIE+L+ +I GPDFPTGG I+  +  I E Y  G+G F +R +  VEE
Sbjct: 186 NGLIALIKNPEISIEELMNFIPGPDFPTGGEII-GKSGIREMYTTGKGSFTIRGKVHVEE 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    IV+TEIP+ + K+ LI+KI E      +P ++DIRDES ++   ++       
Sbjct: 245 KKKKKN-IVITEIPFNISKADLIKKIVEYAEKSSLP-IKDIRDESDKEGLRIVIEIPNDT 302

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + ++++ +++  + +++ F   + V+   + P +M L  ++  ++ HR EV+ RR+ +  
Sbjct: 303 NEEIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYY 362

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLR 437
           +   ++  IL+GL+ A  +ID II++IRN +     +      F+ TE Q  AI++LRL 
Sbjct: 363 KQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELIDMFNFTETQAKAIVDLRLG 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLE  ++  + ++L+ + +    L+ + ++ + +I  E+  +K  +        R++
Sbjct: 423 RLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVYEKIIEELEAIKSEYGD-----SRKS 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGD 549
              +         +  +I  + + + ++ +G+++          +     ++  +  + D
Sbjct: 478 IILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDTFKTQRRGGKGVTGSNLMDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV 607
           ++   ++ H   + L  ++ GK Y L    +   S    G  I   +++  ++ I+T   
Sbjct: 538 AIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGRQIAKYLNIGQDEKILTMLS 597

Query: 608 YDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVV 664
            D+   +L  V+  G A      E      +G   +    ++ +  V K+      + + 
Sbjct: 598 VDNFEGELFFVTKNGKAKRTSLKEFENINSRGMKAITFDGDDLLVSVQKIDNPDQTILIA 657

Query: 665 GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +N   + F I ++  M R   GV      +          + +    +    + Y +  
Sbjct: 658 TKNGLCIRFPISEVRTMGRNAMGVIGIRLSNDDAVVSSSLLMDDEHYLLTVTSKGYGKLT 717

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                 + KRGG+G        ++G  + 
Sbjct: 718 ETSQYRIQKRGGLGIKNISDISKAGHIVG 746


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     S+++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  EI+   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEIQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGESMT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPISLLE--AKRGKKGKLLP 753


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 23  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 74

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 75  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 134

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 135 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 194

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 195 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 254

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     S+++ +I E                  
Sbjct: 255 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQL 314

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 315 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 374

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 375 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 434

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 435 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  EI+   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 495 DENEKRKLIIKEIQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 545

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 546 KGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 605

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 606 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 665

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 666 GETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGESMT 725

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 726 HTAVSSEPEILIESEGRRGAAHKDRIPISLLE--AKRGKKGKLLP 768


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 215/748 (28%), Positives = 399/748 (53%), Gaps = 23/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERYLDLPLEEVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D++ VD+   +++ + EPVV P+KFPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKIAAELLRDIDKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +  +  ++NP +++++L++ I GPDFPTGGI V+  E I ++Y  G+G   VR 
Sbjct: 185 HLGEVIDGVIMQMENPNVTLDELMQVIKGPDFPTGGI-VQGIEGIRQAYSTGKGKVVVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++  G   IV+TEIPY+V K+ L++K+ E+   K++  + ++RD++      ++ 
Sbjct: 244 KAEIEDLRGGKQQIVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + +++ +F  +D++  +  NM  +     P++M L  +++ ++ H+++V+ R
Sbjct: 304 ELKKDADANGILQYLFKNTDLQITYNFNMVAIHNK-TPRLMGLKSLIQAYIDHQKDVIIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+++ +Q    R  I++GL+ A   +D++I  IR        K  ++++F  TE Q +AI
Sbjct: 363 RATYDLQKAKDRQHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQFDFTEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L     +++++L S K+    +  E+  +K+ F+    
Sbjct: 423 VTLQLYRLTNTDITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQFTDE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEG 548
               R T  +    +       ++  E + V ++  G+++     S   S       KEG
Sbjct: 481 ----RRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVKRTSLRSYAASNGELPGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L      +T D +LL +  G    LP   L     + +G+ +  L+ ++ + DI+T  
Sbjct: 537 DYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDDILTTL 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL ++ +G A   + S   A    K    LK+  ++++  V++ +G + V
Sbjct: 597 AVKEFSEEESLLFITRQGMAKRSQLSLYKAQRFSKPLMALKLKDDDEVVSVMRTSGNEEV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +       L FS ++I ++  R  GV+  + K D  + D   F + + + ++    R  
Sbjct: 657 FIATSFGYGLWFSENEISQVGQRAAGVKGINLKNDDAVVDATTFTLNDRVEFLVVTHRGG 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  +        R   G ++ +   ++
Sbjct: 717 VKRISITEFDKSTRAKRGLVMLRELKKN 744


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/839 (30%), Positives = 408/839 (48%), Gaps = 112/839 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+   +KK+
Sbjct: 6   NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+  +SEPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+     I  ++  G+G   V+ +
Sbjct: 186 LGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   I++ EIPYQV K++LIE+I EL+  KRI  + D+RDES +    V   
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +R+EVL RR
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFIEYRKEVLTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + FR++ +  +  +  G+ IA LNID++I+IIR+                          
Sbjct: 364 TQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMI 423

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT  QV +IL ++L+ L  LE+ +++ +L ++++  ++   LL 
Sbjct: 424 ELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +     +   + E+K   +        R T  + S  +     + +I KE + V ++ 
Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVP------RKTTIDYSHFETDV--EDLIPKEDMVVTVTM 535

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +           +E D +      +T   +L  S  G+ Y L   
Sbjct: 536 SGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVY 595

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESE 630
            L  G     G ++  +  L+ N+ I +               +L  ++ GN      S+
Sbjct: 596 KLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSD 655

Query: 631 IIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---G 686
                  GK  + +   + +  V V    +HV +  +  K + F++  I +  +G+   G
Sbjct: 656 FQYVPSNGKIAMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQF-KGRISDG 714

Query: 687 VRLQSY-------------------------------------KDGGI--SDVICFKICE 707
           VR                                         K+ G+    V    +  
Sbjct: 715 VRAIRLSSEEDQVISMSVLIAMEVDSETKDLYLKIPLEKRLLVKEDGVINQGVANMLVDL 774

Query: 708 GLT-------------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           GL+              +      + +  +        RGGVG +      R+G  +SS
Sbjct: 775 GLSQDVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISS 833



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SS 646
            +L+DL  +QD+  + V +    +L V+  G        E     R G   + +     +
Sbjct: 769 NMLVDLGLSQDVFMSMVQNEE-FILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN 827

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
              +      + DH+ ++    KL+  +++ I  + R  +GV L  +K      V+   
Sbjct: 828 GNVISSFSVESNDHIMLITNKGKLIRIAVNDIRIVGRSTQGVTL--FKTDKQEKVVSVA 884



 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 40/106 (37%), Gaps = 10/106 (9%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVD---------LSALHFKEGDSLKIALHAHT 559
            +  +M++ E   + ++  G+ +   ++            ++ L  +   ++  +    +
Sbjct: 779 DVFMSMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRNGNVISSFSVES 838

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            D I+L++  GK   +   ++    G       L   +  + +V+ 
Sbjct: 839 NDHIMLITNKGKLIRIAVNDI-RIVGRSTQGVTLFKTDKQEKVVSV 883


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 268/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/775 (31%), Positives = 386/775 (49%), Gaps = 52/775 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +    V L     E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL      +
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-----------VQRYPLISGQGNFGNID 122
           K AR+VGEV+GK HPHGD +VYD+LVRLAQ               R PLISG GNFG++D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLD 138

Query: 123 GDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           GD AAA RYTE R+  ++E ++L  +D D VDF   ++    EPVV P++ PN+L NG S
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+     I +
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL-GISGIAD 257

Query: 242 SYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++R GRG   VR +   EE+        IV+TEIPY   KS L+ KIAEL+ +K +  + 
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVS 317

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES      ++    R     +++ +++  + +++RF  N+  +     P+V  +  
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKE-PEVFSIKR 376

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L  R  V+ RR+   +   + R  +L+G L     +D+++ ++++          
Sbjct: 377 LLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQA 436

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL++ ++    + 
Sbjct: 437 LQKDFGLSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASDLRELLSNKQRVLKVVE 496

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E   +K  F        RRT   E    D       +I      + +S +G+I+     
Sbjct: 497 KEALALKNEFGSP-----RRTVLEEYG--DGRIDNIDVIPNNESFLTLSEKGYIKRMQPD 549

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +  +   S    K  D +  +      D +L+ S  G  Y+  A  +   S    
Sbjct: 550 TFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTST 609

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  ++ +   + I + F    +     L++++SKG     E     +   +G   ++
Sbjct: 610 GVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQ 669

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +   +++K V   T  D + +   N   +     +   M RG +G+R    K+G   ++ 
Sbjct: 670 LMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAMRIKEG--DEIA 726

Query: 702 CFKICEGLTWIDSAG--------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              I  G  W +S               SE   L ++ + G    +    FPR G
Sbjct: 727 AIDIVPGSVWKESPTLLCTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHG 781



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 43/250 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   +    +   ++   V+++++G+I+  +  +        + A+   EGD LK 
Sbjct: 619 IPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQLMEGDELKW 678

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              A  +DRI + S +G A   P     S R     ++ +  +    +I    +      
Sbjct: 679 VRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAM-RIKEGDEIAAIDIVPGSVW 736

Query: 610 -------------------STCKLLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEE 648
                                  LL VS  G A  V  +    +   + G    K    +
Sbjct: 737 KESPTLLCTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796

Query: 649 KMKLVVKV--------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGIS 698
           ++  +  V        + + + V  +      F + +I   SR G+G++L     D  + 
Sbjct: 797 RLASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVK 856

Query: 699 DVICFKICEG 708
            V      + 
Sbjct: 857 SVSVVAASDS 866


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/765 (35%), Positives = 409/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIVKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 591 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/838 (30%), Positives = 407/838 (48%), Gaps = 111/838 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV  VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+G  +KK+
Sbjct: 6   NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  G+G   ++ +
Sbjct: 186 LGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIIQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I++ EIPYQV K++LIE+I ELI  K+I  + D+RDES +    V   
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +R+EVL RR
Sbjct: 305 LKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNK-PKVMSLPDIISTFVEYRKEVLTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + FR++ +  R  +  G+ IA LNID++IAIIR+                          
Sbjct: 364 TQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMI 423

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                       +   LT  QV +IL ++L+ L  LE+ +++ +L ++++  ++   LL 
Sbjct: 424 ELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELLK 483

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +     I    +E+K   +        R T  + S  +     + +I KE + V ++ 
Sbjct: 484 NKESLLQLIKDGFKEIKAKLAVP------RRTTIDYSHFETDI--EDLIPKEDMVVTVTM 535

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          K           KE D +      +T   +L  S  G+ Y L   
Sbjct: 536 SGYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVY 595

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESE 630
            L  G     G ++  +  L+ N+ I +               ++  ++ GN      S+
Sbjct: 596 KLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSD 655

Query: 631 IIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---G 686
                  GK  + + + + +  V V    DHV +     K + FS+  + +  +G+   G
Sbjct: 656 FQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQF-KGRMSDG 714

Query: 687 VRLQSY------------------------------------KDGGIS------------ 698
           VR                                        K+ G+             
Sbjct: 715 VRAIKLSSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGVVNGGIAKILCDLG 774

Query: 699 ---DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              D+    +      +      + +  +        RGGVG +      R+G  ++S
Sbjct: 775 LEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNGNVVAS 832



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +L DL   QDI    V  +   +L V+  G        E     R G   + + +  +  
Sbjct: 769 ILCDLGLEQDIFVTMV-QNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARNG 827

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
            VV      + DH+ ++ +  KL+  ++  I  + R  +GV L  +K      V+   
Sbjct: 828 NVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTL--FKTEKREKVVSVA 883


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTTDS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 712

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 713 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGRLLP 755


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/765 (35%), Positives = 407/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  + +  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+ S + +   Y  G
Sbjct: 180 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+  S G  FI +  +++   + GK  +   S
Sbjct: 591 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + + F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPVAVYASSFINPDCKIIAATSQNRAIAFPIGELKIMAKGKGLQIIGLNAGESMT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPISLLE--AKRGKKGRLLP 753


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 223/759 (29%), Positives = 409/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGGI V+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGI-VQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +  NM  ++    P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT-EGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L     +  G+ +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 277/782 (35%), Positives = 415/782 (53%), Gaps = 56/782 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  ++    +    E+   + L    +  YL YALS +K RA+PD+ DG KPV RRI+ A
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLASYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           M  MGL +G           KSAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI 
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+T++A L+L  +D+  V F   Y+    EP   P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVGFVPNYDGSTEEPRQLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
             L NG SGIAVG+AT IPSHN++EI +A +AL+ NP+++ E+L   + GPD+P GG I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAAMVPGPDYPGGGQII 240

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---- 289
            S   I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   +++E+I EL    
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 290 --------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333
                         + A  + +L+ +RDES++D  VRIV  PK   +    L+ ++   +
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGKVPQQELITTLLAHT 360

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +ET  P+N+ ++ +   P    L  +L+EW+A R++ + RRS  R+  +  R+ IL+G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LNIDE+IAIIR  D+PK  ++ RF L++ Q + IL +RLR L +LE  +I+ EL  
Sbjct: 421 QTVLLNIDEVIAIIRTADEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKE 480

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  E+ K++ +L +       +  EI    + F+ +      R T  +    DK    + 
Sbjct: 481 LREEQGKLEDILANPASLRRLMVKEIEADAKQFADA------RRTLIQA---DKRATAEV 531

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
            +  EP+TVV+S +GW+R+ + H  D     FK GD+L       T D ++   ++G+ Y
Sbjct: 532 KVVDEPVTVVVSQKGWVRARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVY 591

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           ++    L   RG G+ I  LI+L      V  F   +   LL+  S G  FI     + A
Sbjct: 592 SVAVSQLPGARGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTA 651

Query: 634 NTRKGKTFLKVSSEEKMKLV----------VKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
             R GK F+ +   E++               V   HV       ++L F I ++ +M+ 
Sbjct: 652 RNRGGKAFVSLGEGEQLCRPSHAAFTSGSQALVPATHVCCASAGGRILTFEITELKQMAN 711

Query: 684 -GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK-----RGGV 736
            G+G+ L   +    ++    +        I   GR     +  L           RG  
Sbjct: 712 GGRGLMLIDLEPKDTLAGAAAYTRS---VRIAGVGRGGKERDETLEIRSLNNARFPRGRK 768

Query: 737 GS 738
           G 
Sbjct: 769 GK 770


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/765 (35%), Positives = 409/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  ++  F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 422 IRESDDPKADLMEAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   +  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLMIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNTGESMT 712

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 713 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGRLLP 755


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F      G  R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIVKEMQADMKQF------GDVRRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 412/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 23  TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 74

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 75  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 134

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 135 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 194

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 195 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 254

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 255 KGRVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 314

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 315 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 374

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 375 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 434

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 435 IRESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 494

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 495 DENEKRKLIVKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 545

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 546 KGWIRSRAGHNLDLSQTAFKEGDCLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGD 605

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 606 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 665

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 666 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAG--ES 723

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL---GKRGGVGSLVP 741
           +    +   L  +  +      +  D +       KRG  G L+P
Sbjct: 724 MTHTAVSSELEILIESEGRRGAAHKDRIPISLLEAKRGKKGRLLP 768


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 266/765 (34%), Positives = 408/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLI--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL+
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIVKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+  S G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 653 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 712

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 713 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGRLLP 755


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/765 (35%), Positives = 410/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 223/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D      V +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K                  +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/764 (35%), Positives = 415/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/764 (35%), Positives = 416/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 270/765 (35%), Positives = 409/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIVKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMAKGKGLQIIGLNAGESMT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPISLLE--AKRGKKGKLLP 753


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 391/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 230/758 (30%), Positives = 374/758 (49%), Gaps = 62/758 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  + +   L + YL YA S I  RA+PD+RDG KP  RRI+ AM+++GL   ++  K A
Sbjct: 23  INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            I+GE + + HPHGD S+YDSLVR+AQ +  RY L+ GQGNFG+I G   AA+RYTEAR+
Sbjct: 83  GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L+ ++ D VDF D Y+ +  EP+V P KFPNLL NG+ GIAVGMAT IP HN+
Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C+A + L+DNP  ++  L++ I GPDFPTGGII+  R+ ++E+Y  G G   +RAR 
Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIM-GRQGLLEAYARGAGKITLRARA 261

Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR--IV 312
            V EEV   S  I+++E+P+QV ++ ++E+IA L+  +RIP +  +RDE SA +     +
Sbjct: 262 QVMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  DP L++  ++  + ++    + M  L  GR  + + L  +L+++L HR  V+
Sbjct: 322 IVEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRE-LTLKEMLQKFLDHRVHVI 380

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS---------- 419
            RR+ F ++   +R  +L+G LIA  +I+++I I R   N  + K  +            
Sbjct: 381 RRRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQR 440

Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                              + +TE Q +A++NLRL  L  LE  +I  E   L       
Sbjct: 441 AIGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGY 500

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           ++LL+        I  ++  +   +              EVS        + +I  EP  
Sbjct: 501 ETLLSDDANIHAVIREDLERMAAKYGDDRK--------TEVSDDGGDVDMEDLIVDEPNV 552

Query: 522 VVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           V IS+ G+++ +      +            ++ D ++    A T   +L  +  G+ Y 
Sbjct: 553 VTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYW 612

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           L    +        G AI  ++ L   + I +      +     LL+ + +G     +  
Sbjct: 613 LKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLM 672

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
                 + G   + +   +++  V      D V +  +    + F    I  M R  +GV
Sbjct: 673 AYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGV 732

Query: 688 RLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           R     KD  +  ++     +GL  +      Y +   
Sbjct: 733 RGIKLGKDDALVGMVV-ADPDGL-LLTVCENGYGKRTP 768


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/757 (30%), Positives = 391/757 (51%), Gaps = 29/757 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+ V +   +++ +L+YA+S I  RA+PD+RDG KPV RRI++ M+++GL     FKK+
Sbjct: 27  RVQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMNDLGLSNQERFKKA 86

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+G+ HPHGD S+Y+++VR+AQ F  RYPLI+G GNFG+IDGDSAAA RYTEAR
Sbjct: 87  AAVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDGDSAAAMRYTEAR 146

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +++ ++++ VDF DTY+  + EP V P+ FPNLL NG++GIAVGMAT+IP HN
Sbjct: 147 MSKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGIAVGMATNIPPHN 206

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            +E+  A +A I+N  I  + L++Y+ GPDFPTGG I+   E++   Y  G+G   +R++
Sbjct: 207 FKEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEIL-GAENLKNIYNTGKGRIFIRSK 265

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             + +  +    IV+TEIP+Q++KS LIE IA L   K I  + D+RDES      ++  
Sbjct: 266 TQIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDESNRQGIKLVID 325

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R ++P +++ +++  S ++  F  NM  L  G VP+++ L  +LKE+   R  V+ R+
Sbjct: 326 LKRDVNPHVVLNNLYKNSQVQVSFNFNMIALVKG-VPKLVNLKQMLKEFFDFRINVIQRQ 384

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAIL 432
             F +    ++  ++K L+IA  +ID ++ +I++    K      + ++ L E Q   IL
Sbjct: 385 KQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEKYQLDELQSKVIL 444

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            + L+ +  LE  +IK E   L  +  +  +++NS   +   +  ++  +++ F      
Sbjct: 445 EMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKEQILKQDLLNLQKNFQDG--- 501

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544
              R T   +   D    + ++IEKE I + I+++G+I+ L   +             + 
Sbjct: 502 ---RRTVINMENQDLDIDKSSLIEKEKILITITHKGYIKRLNLDTYKKQNKGGKGVIGIT 558

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
               D ++      T D  L  +  GK Y +    +   S    G  +  LI +   + +
Sbjct: 559 MNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKGIPLVNLIPMAKGEFL 618

Query: 603 VTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
            T             L++V+ KG        E       GK    +  ++++  V+K +G
Sbjct: 619 TTLTSVTEFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAFALKKDDEVLAVLKTSG 678

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSA 715
              + +     K +    + I   +R   GV      KD  I         E    +   
Sbjct: 679 QQDIILASSGGKSIRLKENSIRTTNRKSSGVIGMRMDKDEQIVGAAVVCHPE-QDILVVT 737

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              Y +          +RGG G    K   + G  ++
Sbjct: 738 EFGYGKKTQASFYKPQQRGGKGVKTLKITDKKGHLVA 774



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T      + +   V+++ +G+I+  +             A   K+ D +   L       
Sbjct: 622 TSVTEFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAFALKKDDEVLAVLKTSGQQD 681

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKG 621
           I+L S+ GK+  L   ++ +       +  +  ++ ++ IV  A V      +LVV+  G
Sbjct: 682 IILASSGGKSIRLKENSIRTTNRKSSGVIGM-RMDKDEQIVGAAVVCHPEQDILVVTEFG 740

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQ 677
                + S      R GK    +   +K   +V +      + + ++ +  +++    ++
Sbjct: 741 YGKKTQASFYKPQQRGGKGVKTLKITDKKGHLVALKTIFPNEELILISQCGQVIRIEANK 800

Query: 678 IPEMSRGK---GVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           +   ++ K   G RL   KD   + +++  +  E    ID 
Sbjct: 801 V-STTKSKNTEGNRLFKLKDDDKLLNLVVVQKQEDDDSIDE 840


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 272/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 234/713 (32%), Positives = 383/713 (53%), Gaps = 32/713 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  +    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +K
Sbjct: 63  DGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYK 122

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE
Sbjct: 123 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTE 182

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  + E ++L  +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+IP
Sbjct: 183 CRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIP 242

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +    LI NPE ++++LLEY+ GPDFPTGG+I+ +   I+E+YR GRG   V
Sbjct: 243 PHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNI-GILEAYRTGRGRIIV 301

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES     
Sbjct: 302 RGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGM 361

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  DP +++  ++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  
Sbjct: 362 RIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQ-PKLMGLKELLQAFLDFRCS 420

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F++     R  I++G+++   N+D +I +I+           + + F L+E Q
Sbjct: 421 VVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQ 480

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL++ LR + +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  FS
Sbjct: 481 AEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFS 540

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                   R +  E + + +      +I  E + + +S +G+++ +K          ++ 
Sbjct: 541 TP------RRSMLEDTDSGQLEDV-DVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIG 593

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
            S    +  D++   +  H  D +L  S  G  ++  A  +        G  +  ++ L+
Sbjct: 594 KSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLS 653

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + I +      +     LL+++  G    V  +   +    G   +++   +++K V 
Sbjct: 654 DGERITSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVR 713

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
             T D  VA+  +N  +++ S + I  + R  +G      K G    +    I
Sbjct: 714 CCTNDDLVAMASQNGMVILSSCEIIRALGRNTRGSIAMRLKQG--DKMASMDI 764



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 80/247 (32%), Gaps = 41/247 (16%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G+I+ +         S  + A+    GD LK     
Sbjct: 656 ERITSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCC 715

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-----DIVTAFVYDSTC 612
              D + + S +G    L +  ++   G      + + L         DI+ A +     
Sbjct: 716 TNDDLVAMASQNGMVI-LSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLE 774

Query: 613 K----------------LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVV 654
           K                LL VS  G    V  S        R G    K S+E+ +  V 
Sbjct: 775 KALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVF 834

Query: 655 KV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
            V         + + V +V ++  +    +  I   SR  +GV L   +  G I      
Sbjct: 835 VVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLM 894

Query: 704 KICEGLT 710
              E  T
Sbjct: 895 SATETET 901


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/755 (35%), Positives = 402/755 (53%), Gaps = 49/755 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-- 70
           + E     SL    +  YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG   
Sbjct: 12  IPEPADQDSLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLGFGGAN 71

Query: 71  -----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                   KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F QRYPL+ GQGNFG+ DGD 
Sbjct: 72  GASGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDG 131

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+ ++  L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAV
Sbjct: 132 AAAMRYTEARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTLLNGASGIAV 191

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT IPSHN++E+ +A +ALI  P +S E+L   I GPD+P GG I+ S   I  +Y  
Sbjct: 192 GLATEIPSHNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISSTAEIAAAYST 251

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---------------- 289
           GRG  +VRARW +E++ RG W +VV E+P  V   R++E+I EL                
Sbjct: 252 GRGSLKVRARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKAGKKALSQEQ 311

Query: 290 --IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
             +    + +L+ +RDES++D  VR+V  PK   +    L+ ++   + +E+   +N+ +
Sbjct: 312 VQLKQTVLSVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLESSASINLTM 371

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  +L EW+  R+  + RRS  R+  +  R+ IL+G  +  LNIDE+IA
Sbjct: 372 VGLDGKPTQKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIA 431

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           IIR  D+PK  +++RFSL+E Q + IL +RLR L +LE  +I+ EL  L  E+ K++ +L
Sbjct: 432 IIRQSDEPKAALIARFSLSERQAEDILEIRLRQLARLEAIKIEQELKTLREEQGKLEEIL 491

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S       +  EI    + F+        R T  +  +     + +  +  EP+TVV+S
Sbjct: 492 GSPAALRRLLVKEIEADAKQFADP------RRTLIQAEKKA---VLEVKVLDEPVTVVVS 542

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GW+R+   H  D ++  FK GD L       T D +L   + G+ Y++P  +L   RG
Sbjct: 543 AKGWVRARSGHGHDAASFAFKAGDGLYATFECRTVDTLLAFGSRGRIYSVPVASLPGARG 602

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ +  LIDL     +V  F   +   LL+ +S G  F+     + +  + GK F+  +
Sbjct: 603 DGQPLTTLIDLESGTQLVHYFAGPANATLLLSASGGYGFLATVENMTSRLKAGKAFISCA 662

Query: 646 SEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKD 694
             E +     V+G           HVA      ++L F I ++  + + G+G  L     
Sbjct: 663 EGETVCRPSHVSGGTGATPLNPATHVACASTGGRILTFEIAELKLQAAGGRG--LMLLDL 720

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
                +           I+  GR     E  L   
Sbjct: 721 DAKDTLAGAAAYTRSVKIEGIGRGGKAREETLEIR 755


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 239/778 (30%), Positives = 400/778 (51%), Gaps = 38/778 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLPTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL+SG GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  ++ E +L  + ++ V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALID P++S +KL E I GPDFPTGG IV     I E+Y  G+G
Sbjct: 186 TNIPPHNLGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIV-GDSGIREAYTSGKG 244

Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R     EE+      +    I++TE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 245 SIVLRGVAKTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R  +P  +++ ++  + +++ F   +  L  G+ P+ + L  +L+E
Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQ-PRQLSLRQMLQE 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R + L RR S+ +   D R+ I+ GLL A   +D++I I+R+       K  + SR
Sbjct: 364 FLKFREQTLNRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L+E+Q DAIL + LR L  LE+  ++ E + L  +   +  LL+  K+    +  ++R
Sbjct: 424 LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQILLSDRKELLKTLKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRA------------DKATLQQAMIEKEPITVVISNRG 528
            +K  ++          +  E ++               +         E + +  S+RG
Sbjct: 484 SLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNSPDAEPPEEVILDFSHRG 543

Query: 529 WIRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           ++R L+       A +   + D +  +    T   +L++++ GK Y +  G++    G  
Sbjct: 544 YVRRLQPSGKKSKAENGLPDHDFIIQSDLTATDKELLVITSSGKVYPVNVGDIRPTTGRS 603

Query: 588 EAIQLLIDL------NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKG 638
                LI +         + +V+  +      T ++++++ +G    +   E+   TR+G
Sbjct: 604 PRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQMVLLTKEGRIKRLTLGELTNLTRRG 663

Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDG 695
            T LK+  ++++      T  +++ +     +LL F+ D   +P M R   + LQ+ +  
Sbjct: 664 ITILKLKEDDELLFTQLTTPKENLILASSGGRLLKFAADDQQLPVMGRTA-MGLQALRLL 722

Query: 696 GISDVI-CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               ++ C         +      Y +           RG +G+   K   ++    +
Sbjct: 723 KHQQMVGCVTAAGEDNLLLVTEEGYAKRLPVSNLKRADRGNIGTQSLKFASKTDNLAA 780



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            V+++  G I+ L    +       ++ L  KE D L         + ++L S+ G+   
Sbjct: 639 MVLLTKEGRIKRLTLGELTNLTRRGITILKLKEDDELLFTQLTTPKENLILASSGGRLLK 698

Query: 575 LPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
             A +  L         +Q L  L H Q +V          LL+V+ +G A  +  S + 
Sbjct: 699 FAADDQQLPVMGRTAMGLQALRLLKH-QQMVGCVTAAGEDNLLLVTEEGYAKRLPVSNLK 757

Query: 633 ANTRK--GKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
              R   G   LK    ++    +V  +    VA+V    +++   +D +P ++R GKG
Sbjct: 758 RADRGNIGTQSLKFASKTDNLAAMVQAIASAEVALVTNKDRVVRIPVDTVPILARDGKG 816


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y++  I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 220/744 (29%), Positives = 396/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++++   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEVIYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+  +              +   G  
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLLTQRGSL 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
              S  ++      R   G  V +
Sbjct: 715 KRVSTEEI--PATSRAKRGLQVLR 736



 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 27/146 (18%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++IS  G+        V         + A++ KE D L+ A   +T+   L L+  G
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYL-LTQRG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----------------DIVTAFVYDSTCKL 614
               +    + +       +Q+L +L +                  D+ +  V ++   L
Sbjct: 713 SLKRVSTEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFSTEVEENYQTL 772

Query: 615 LVVSSKGNAF--IVEESEIIANTRKG 638
           LV S+KG  +   +++  +   T  G
Sbjct: 773 LVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 399/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDN-YTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR  D     K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 475 GNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L     +  GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGDH 660
           + D          + +G     E  E+        K   + K+   E+++  V  V  + 
Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQEDRIIAVAPVVLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +N   L F+I+++P +  +  GV+  + KDG     +       +  +   G   
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVAAVFKSTTPSMYILTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             S++D+   +  R   G  V +
Sbjct: 715 RMSQDDI--PVTSRAKRGLQVLR 735


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 220/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 268/765 (35%), Positives = 411/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L ++   V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNSAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++     G    
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILSTSRAKRGLQVLR 739


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 228/715 (31%), Positives = 380/715 (53%), Gaps = 35/715 (4%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ +   A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PLI GQGNFG+
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE+R T+++E IL+ +D+D V+F   Y++   EP V P++ P LL NG+
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMAT IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I   R  I+
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGII 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG  R+RA+  +E  G+    IV+ E+PYQV K+RLIE IA L   K+I  + +
Sbjct: 180 DAYNTGRGRVRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISE 238

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES  D   V+    +    +++M +++  + MET F + + +    + P+V  L  +
Sbjct: 239 VRDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGI-ILLAVYNKEPKVFTLPEL 297

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417
           L  +++HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+   K  +
Sbjct: 298 LNVFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKL 357

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
             RF L+  Q  AIL++RL  L  L+  ++++E   L+A   +++S+L S ++    I  
Sbjct: 358 ELRFGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKE 417

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E++E +S             ++  +      + +I  EP+ V I++ G+++      
Sbjct: 418 ELSEIREKYS--------SKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKS 469

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               +       A+   + D ++     +T D ++ ++  G+ Y L    +   S    G
Sbjct: 470 YEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSRTAKG 529

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +A+  LI+L  ++ I+       +D +  L   +  G       SE       G   + +
Sbjct: 530 KAVVNLINLRPDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVL 589

Query: 645 SSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK---DGGIS 698
              +++      T    ++ +     + + F +++  E  R  +GVR   +K   D  + 
Sbjct: 590 DDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVD 649

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +   I + L  +    +   +           R G G +  K   ++G  + +
Sbjct: 650 ANVVDNIEQELLTVSQ--KGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGA 702



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 15/229 (6%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA- 554
                   +  +  ++       +  G ++              + A+   + D +  A 
Sbjct: 540 PDEKIMEIIPTSDFDESKSLAFFTRNGVVKRTSLSEFSNIRSNGVRAIVLDDADEIVTAK 599

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCK 613
           +   +T  +++ ++ G+                  ++ +   +    +V A V D+   +
Sbjct: 600 ITTPSTQYLMIFTSLGQCIRFDVEKTREQGRSTRGVRGIKFKHDTDFVVDANVVDNIEQE 659

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENRK 669
           LL VS KG        E     R G   + +         +  V+      + ++    K
Sbjct: 660 LLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGK 719

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICFKICEGLTWIDSA 715
           ++   +  I +  R   GV + +   KD  +S   C K  +    I++A
Sbjct: 720 MIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKEDDDELDIENA 768


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 222/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+                 +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736



 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 27/159 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           D   +      K    ++IS  G+        V         + A++ KE D+L+ A   
Sbjct: 641 DTDQIVAVAPIKLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFIC 700

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----------------D 601
           +T+   L L+  G    +    + +       +Q+L +L +                  D
Sbjct: 701 NTSSFYL-LTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGSVAEQGFVGD 759

Query: 602 IVTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKG 638
           + +  V ++   LLV S+KG  +   +++  +   T  G
Sbjct: 760 LFSTEVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 424/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL IA  NIDE+I II++       +  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKEFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVL 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    I E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/461 (12%), Positives = 151/461 (32%), Gaps = 39/461 (8%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELII------AKRIPLLEDIRDESAEDVRIVLFPKNR 318
              I+   I + ++K++    I E +        + I +++  R       R+V      
Sbjct: 359 RKNIIERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLS 418

Query: 319 SLDPDLLMES-IFMLSDMETRF---PLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLF 373
            +  + +++  +  L+ +E       LN+ + L       ++    I+         +  
Sbjct: 419 EIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGL 478

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           +    R   I    E+LK  +   +  + I+ ++  +   K +  + + L          
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGG----- 533

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
              + L   +          L         ++++  + +   A EI++           G
Sbjct: 534 ---KGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR-----ASKG 585

Query: 494 RRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKS------HSVDLSALHF 545
           +  +    +   ++    +   E   +   ++ +  G I   +S       S  +  +  
Sbjct: 586 QNISELINLGDQEEILTIKNSKEFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKL 645

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            + D +  A      ++++ LS  G A+   + ++       + +  +  L      V  
Sbjct: 646 NDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKV 704

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDH 660
                   LL++S  G    +  S+I    R    +      +K     +  +     D 
Sbjct: 705 LAIRENPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDE 764

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + +V +  K L     ++ E  +  +G+++    +  +  V
Sbjct: 765 ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSV 805


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/813 (30%), Positives = 410/813 (50%), Gaps = 77/813 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +    + N+K +S+   +   YL+YA+S I  RA+PD+RDG KPVHRRI++AM + G
Sbjct: 1   MQKTEIPKDNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+   F+KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F    PL+ GQGNFG+IDGD 
Sbjct: 61  YDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+++V++ ++  ++++ + F+  Y+E + EP V P+++PNLL NG  GIAV
Sbjct: 121 AAAMRYTETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMATSIP HN+ EI    LALIDN +I I +L++Y+ GPDFPTGG+I+  ++ I   Y  
Sbjct: 181 GMATSIPPHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVII-GKDIIKHGYNN 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++R    VE +  G   +V+T IPYQV KS L E+IA+L+  K+I  ++DIRDES
Sbjct: 240 GRGSFKIRGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V       ++P+ +   ++  + +E+ F  N   +     P+   L   L  +L
Sbjct: 300 NREGIRVAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIV-QGKPKTCTLKDFLSNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------- 418
           + R +++ +++ F +Q  + R  IL GL ++  N+D+II IIR+   P+           
Sbjct: 359 SFREDIVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKW 418

Query: 419 ------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                               +SL+E QV AIL LRL+ L  L   +I+ E+  L     +
Sbjct: 419 KINKSQKLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIAR 478

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              +++S K+    I+ E++ +KE F+       RRT   +          +  I+K+ +
Sbjct: 479 YKKIISSKKELLKVISEELKNIKEKFAVP-----RRTKIIDAVLNY---DIEETIQKQSV 530

Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + ++ +G+I        +  K      S +  ++ DS+   L  +T   +L  ST+G  
Sbjct: 531 IITVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLV 590

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAF 624
           Y + A  +        G+++  ++ L  +Q I +              +++  +++G   
Sbjct: 591 YKVKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVR 650

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPE-MS 682
                +  +    GK  +K+ + +K+  V     D   ++     K + F   ++     
Sbjct: 651 KNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKG 710

Query: 683 R-GKGVRLQSYKDGGISDVICFKICEGLT---------------------WIDSAGRSYN 720
           R  KG++           ++   + +                         +  +   Y 
Sbjct: 711 RSSKGIKGIEL--APNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYG 768

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  + +   +  RGG G +     PR+G   SS
Sbjct: 769 KKTSHIDYRVTNRGGKGIIGIVNSPRNGNITSS 801



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 32/220 (14%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +  + +G +R                A+     D +           I+L +  GK   
Sbjct: 640 IIFATAQGKVRKNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIR 699

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--------------------CKL 614
             A  L   +G        I+L  N  IV+  V D+                       +
Sbjct: 700 FEAKKLRVFKGRSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFV 759

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           L +S  G        +     R GK  + +     +           GD + +     ++
Sbjct: 760 LSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRNGNITSSFPVFEGDEILISTNKGRV 819

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           +  ++ +I    R  +GVR+     G    V   KI + L
Sbjct: 820 IRVAVKEIRTAGRNTQGVRIIKL-SGEEKVVSAIKIDDNL 858


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 220/744 (29%), Positives = 380/744 (51%), Gaps = 24/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM          F+K
Sbjct: 5   EKYLDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKHFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VRL+Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGTVIGNYHPHGDSSVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +D+  VD+   ++E   EPVV P+KFPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSSISAELLRDIDKQTVDYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +  ID PE SI+ L++ + GPDFPTGGI ++  E I ++Y  GRG   VR 
Sbjct: 185 NLEEVMDAVILKIDKPEASIDDLMKLMKGPDFPTGGI-IQGVEGIRKAYETGRGKIIVRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IVVTE+P++V K+ +++K+ EL I +++  + ++RDE+      V+ 
Sbjct: 244 KAVVETMKGGREQIVVTEVPFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  ++  +D++  +  NM  +     P+++ L  +L  ++AH++EV+ R
Sbjct: 304 ELKKDANSEGVLNYLYKNTDLQITYHFNMVAIQDK-TPKLLSLPSLLDAYIAHQKEVVTR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           + ++ +   + R  I++GL+ A   +DE+IA IR        K  + +++  TE Q +AI
Sbjct: 363 QITYDLNKANARAHIVEGLIKAISILDELIATIRASKDKGDAKAQIKAKYGFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  + ++ +S+L+S K+ +  I  E+R++K+ F+    
Sbjct: 423 VMLQLYRLTNTDIVELEKEAAELKEKIKEYESILSSDKKLFQTIKKELRQIKKKFADP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     +  +  E + V ++  G+++     S   S    L  K+ 
Sbjct: 481 ----RRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYLKRTSLRSYAASNEEELPVKDD 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D     L  +TTD +LL +  GK    P   L     +  G+ I  ++ L+  + ++   
Sbjct: 537 DYPISLLEVNTTDNLLLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEYLIQCM 596

Query: 607 VY----DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-H 660
                  +   L+  +  G     E     A  R K    L +  ++++  V    G+  
Sbjct: 597 PVRDFKSAEGYLIFFTKNGMVKRSEFQLYDAQRRSKALIALNLKGDDEVVHVSHTNGNMD 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           V +       L +   +I  +  R  GV+  S KD   + +   F      +      R 
Sbjct: 657 VFIATYKGYGLWYHESEISVVGQRAAGVKSVSLKDDDEVVNGQVFDDLSEPSLALITQRG 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +           R   G ++ +
Sbjct: 717 SCKRMKLKDFEKTTRAKRGVIMLR 740


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 260/818 (31%), Positives = 398/818 (48%), Gaps = 111/818 (13%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +KK+ARIVG+V+GK HPHGD ++
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YDSLVR+AQ F    PLI GQGNFG+IDGD  A+ RYTEAR+ +V+  +L  +DED VDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+  ++EPVV P++FP+LL NG SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ +    IV+ EIP
Sbjct: 181 DELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K +LIEKI EL+  KRI  + +IRDES +    V+    R+ +   ++  I  L+ 
Sbjct: 240 YQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTP 299

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           + + F +N  VL+  R   +M L  I++ ++  R+EVL RR+ FR++    +  I  GL 
Sbjct: 300 LRSSFSVNTLVLNNNRPA-LMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLY 358

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVS-----------------------------RFSLTE 425
           IA L+IDE+I IIR    P                                    + LTE
Sbjct: 359 IAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTE 418

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   +I   ++E+K  
Sbjct: 419 LQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNR 478

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541
           F+        R T  E S  D     + +I +E + + ++  G+I+ +K           
Sbjct: 479 FAVP------RKTSIEES--DTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGG 530

Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                   KE D +      +T   +L  S  G+ Y L    L        G A+  +  
Sbjct: 531 KGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFP 590

Query: 596 LNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L   + I          D    ++  ++ GN      ++       GK  +K+   +K+ 
Sbjct: 591 LAEGETITNIMPLPSENDENQNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLI 650

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKDGGISDVICFKICEG 708
            V      DHV +     K + F +  + +  SR   GVR           VI   I  G
Sbjct: 651 SVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKL--AKNDSVISMTILNG 708

Query: 709 LTW-----------------------------------------------------IDSA 715
           +                                                       +   
Sbjct: 709 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 768

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              + +  +     +  RGGVG        R+G  ++S
Sbjct: 769 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVAS 806



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L     +     V       +R  KS + D +  +
Sbjct: 638 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSD-----VRQFKSRNSDGVRGI 692

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 693 KLAKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 745

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 746 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVV 804

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 805 ASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTESREKVVSVAKIED 861


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEILATSRAKRGLQVLR 736


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/759 (34%), Positives = 425/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M E+GL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE   G   I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ V+ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNVIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       +  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKEFTDDSYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVL 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    I E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 54/434 (12%), Positives = 140/434 (32%), Gaps = 33/434 (7%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRF---PL 341
           IA   I + I +++  R       R+V       +  + +++  +  L+ +E       L
Sbjct: 386 IALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQANSVLDMKLQKLTALEIFKLEEEL 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +          L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEVAIALCVNTHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KE 518
              ++++  + +   A EI++           G+  +    +   ++    +   E   +
Sbjct: 558 YLFMVSNEGKLYLINAYEIKDSSR-----ASKGQNISELINLGDQEEILTIKNSKEFTDD 612

Query: 519 PITVVISNRGWIRSLKSHSVDLSA------LHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              ++ +  G I   +S             +   + D +  A      ++++ LS  G A
Sbjct: 613 SYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSA 672

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
           +   + ++       + +  +  L      V          LL++S  G    +  S+I 
Sbjct: 673 FIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLAIRENPYLLIISENGYGKRLSISKIS 731

Query: 633 ANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
              R    +      +K     +  +     D + +V +  K L     ++ E  +  +G
Sbjct: 732 ELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARG 791

Query: 687 VRLQSYKDGGISDV 700
           +++    +  +  V
Sbjct: 792 IQVLFLDNDSLVSV 805


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 224/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G ++ +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKN 750



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + L
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLML 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 262/759 (34%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVSNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/390 (11%), Positives = 123/390 (31%), Gaps = 23/390 (5%)

Query: 323 DLLMESIFMLSDMETRFPLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           D+ ++ +  L   +    LN+ + L       ++    I+         +  +    R  
Sbjct: 427 DMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRT 486

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            I    E+LK  +   +  + I+ ++  +   K +  + + L             + L  
Sbjct: 487 KIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSS 538

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            +       +  L         ++++  + +   A EI++     +             +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGD 596

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALH 556
                     + + +   + +  ++    R   +      S  +  +   + D +  A  
Sbjct: 597 QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEI 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               ++++ LS  G A+   + ++       + +  +  L      V          LL+
Sbjct: 657 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLSVKENPYLLI 715

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLL 671
           VS  G    +  S+I    R    +      +K     +  +     D + +V +  K L
Sbjct: 716 VSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKAL 775

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
                ++ E  +  +G+++    +  +  V
Sbjct: 776 RTVAGKVSEQGKDARGIQVLFLDNDSLVSV 805


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 224/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G ++ +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKN 753



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + L
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLML 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/759 (33%), Positives = 424/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L+  +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL IA  NIDE+I II++       +  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
           +I+T            LL+ ++ G     E ++      +G   +K++ ++ +    V +
Sbjct: 599 EILTIKNSKELTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEVVL 658

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + V  + +     IF+   +   +RG  GV     K+G +  V    I E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAIKENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/461 (12%), Positives = 151/461 (32%), Gaps = 39/461 (8%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELII------AKRIPLLEDIRDESAEDVRIVLFPKNR 318
              I+   I + ++K++    I E +        + I +++  R       R+V      
Sbjct: 359 RKNIIERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLS 418

Query: 319 SLDPDLLMES-IFMLSDMETRF---PLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLF 373
            +  + +++  +  L+ +E       LN+ + L       ++    I+         +  
Sbjct: 419 EIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGL 478

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           +    R   I    E+LK  +   +  + I+ ++  +   K +  + + L          
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGG----- 533

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
              + L   +          L         ++++  + +   A EI++           G
Sbjct: 534 ---KGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR-----ASKG 585

Query: 494 RRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKS------HSVDLSALHF 545
           +  +    +   ++    +   E   +   ++ +  G I   +S       S  +  +  
Sbjct: 586 QNISELINLGDQEEILTIKNSKELTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKL 645

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            + D +  A      ++++ LS  G A+   + ++       + +  +  L      V  
Sbjct: 646 NDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKV 704

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDH 660
                   LL++S  G    +  S+I    R    +      +K     +  +     D 
Sbjct: 705 LAIKENPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDE 764

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           + +V +  K L     ++ E  +  +G+++    +  +  V
Sbjct: 765 ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSV 805


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 32/195 (16%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +       E +E            R ++      + D   +      K    V++S  G+
Sbjct: 610 RLGQIKRVERKEF-----TPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 664

Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
                   V         + A++ KE D L+ A   +T+   L L+  G    +    + 
Sbjct: 665 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYL-LTQRGSLKRVSIEEIP 723

Query: 582 SGRGHGEAIQLLIDLNH------------NQDIVTAF----VYDSTCKLLVVSSKGNAFI 625
           +       +Q+L +L +             Q+ V       V ++   LLV S+KG  + 
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVAEQEFVGDLFSTEVEENDQTLLVQSNKGTIYE 783

Query: 626 VEESE--IIANTRKG 638
           +   +  +   T  G
Sbjct: 784 IRLQDLNLSERTSNG 798


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 262/759 (34%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/390 (11%), Positives = 123/390 (31%), Gaps = 23/390 (5%)

Query: 323 DLLMESIFMLSDMETRFPLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           D+ ++ +  L   +    LN+ + L       ++    I+         +  +    R  
Sbjct: 427 DMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRT 486

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            I    E+LK  +   +  + I+ ++  +   K +  + + L             + L  
Sbjct: 487 KIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSS 538

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            +       +  L         ++++  + +   A EI++     +             +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGD 596

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALH 556
                     + + +   + +  ++    R   +      S  +  +   + D +  A  
Sbjct: 597 QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEI 656

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
               ++++ LS  G A+   + ++       + +  +  L      V          LL+
Sbjct: 657 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLSVKENPYLLI 715

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLL 671
           VS  G    +  S+I    R    +      +K     +  +     D + +V +  K L
Sbjct: 716 VSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKAL 775

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
                ++ E  +  +G+++    +  +  V
Sbjct: 776 RTVAGKVSEQGKDARGIQVLFLDNDSLVSV 805


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 251/806 (31%), Positives = 396/806 (49%), Gaps = 73/806 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L    V + +L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNLFSGQVISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +    +L  V E  VDF D ++    EP V P++ P LL NG SGIA
Sbjct: 121 PAAMRYTETRLASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALID P++S EKLL  I GPDFPTGG I+ S E I ++Y 
Sbjct: 181 VGMATNIPPHNLNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEII-STEGITDAYT 239

Query: 245 LGRGGFRVRARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            G+G   VR    +EE+      R    IVVTE P+QV K+  IEK+AEL+   RI  + 
Sbjct: 240 KGKGSIAVRGVTRMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   V+    R   P  ++  ++  +D++  F   +  L  G+ P+ + L  
Sbjct: 300 DLRDESDREGIRVVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALVNGQ-PRQLTLRQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+E+L  R   L RR +  +Q   RR  I++GLL+   N+D  I I+RN       K  
Sbjct: 359 MLQEFLNFREVTLTRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQG 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + SR + +E+Q DAIL + +R L  LE   +++E D L+A  +++  LL   ++    + 
Sbjct: 419 LQSRLNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQRLLGDRRELLKALK 478

Query: 477 CEIREVKEIFSKSTDL------------------------------------GRRRTTFC 500
            E+R +K  +                                          G +R    
Sbjct: 479 KELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGRGSRGAGEQRGGEG 538

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHF-KEGDSLKI 553
           +           +    E   +  +++ ++R L      +  + D SA     E D    
Sbjct: 539 KKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKSAQSRGGESDFSVN 598

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD---------I 602
            + A T + + +L+  GKAY L   ++     R  G  I  L+  +  +D         +
Sbjct: 599 TIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSPSATKDVAPGNLPEIV 658

Query: 603 VTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-G 658
              FV         L+ ++ +G    +  SE+   T +G T +K+  +++++  +    G
Sbjct: 659 AGMFVLSENADATDLVTLTQQGKIKRLPLSELSDITNRGVTAVKLKDDDELRYAMLSKPG 718

Query: 659 DHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           + V +     +LL F ++   +P M R   G +    +      V C  +    + +  +
Sbjct: 719 EQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQATRLRK-QEQLVGCITLAADGSLLLVS 777

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVP 741
              + +        L  RG +G+   
Sbjct: 778 ELGWAKRMPVGSVRLTGRGEIGTQAF 803


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/759 (34%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDEII II++       K  +VS F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVSNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/431 (11%), Positives = 138/431 (32%), Gaps = 29/431 (6%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           I++I ++I + ++      +D     V    L     +   D+ ++ +  L   +    L
Sbjct: 391 IDEIIKIIKSSKL-----AKDAKERLVSNFGLSEIQANSVLDMRLQKLTALEIFKLEEEL 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +       +  L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIVIALCVNTHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++++  + +   A EI++     +             +          + + +   +
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 521 TVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++    R   +      S  +  +   + D +  A      ++++ LS  G A+  
Sbjct: 616 LLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L      V          LL+VS  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
               +  +  V
Sbjct: 795 LFLDNDSLVSV 805


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 232/750 (30%), Positives = 411/750 (54%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGI-IQGVDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L A  +K+ ++L+        I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHDALLTVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + I+  G+I+   + S + S    +  K
Sbjct: 479 ------RLSAIEAEISEIKIDKEVMVPSEEVILSITRHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
            +    ++     ++ +  G       S+    TR  K    +KV  ++++  VV++  D
Sbjct: 593 VYNEKDFNHDAFYVMATRNGMIKKSSVSQF-KTTRFNKPLVGMKVKDKDEIINVVRLESD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L +S  ++ +   R  GV+  + KD     V+  ++ E  + I    R
Sbjct: 652 QLITVITNKGMSLTYSTAELSDTGLRAAGVKSINLKDEDYV-VMTEEVNESDSIIMVTQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +  +  +    KR   G  + K   ++
Sbjct: 711 GAIKRISYKVLQAAKRAQRGITLLKELKKN 740


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 223/759 (29%), Positives = 408/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGGI V+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGI-VQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +  NM  ++    P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT-EGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L     +  G+ +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +     +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRIGFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +     L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I+KGL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/764 (35%), Positives = 413/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I  
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKA 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 225/744 (30%), Positives = 396/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  +  +RDES  D   + F 
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L  A    TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E     T K KT    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYKSKTVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++  N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 75/228 (32%), Gaps = 45/228 (19%)

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA------ 505
           ++L       ++   + +  + ++  +  +    F+ +     +R    E +        
Sbjct: 575 EHLSQTITNFET---NEEILYVEVVDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYKSK 631

Query: 506 ---------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548
                    +   +      K    ++IS  G+        V         + A++ KE 
Sbjct: 632 TVKYAKLKDETDQIVAVAPIKLDDVLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKED 691

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD------- 601
           D L+ A   +T+   L L+  G    +    + +       +Q+L +L +          
Sbjct: 692 DVLQSAFICNTSSFYL-LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLTGA 750

Query: 602 ------IVTAFVYD---STCKLLVVSSKGNAF--IVEESEIIANTRKG 638
                 +V  F  +   +   LLV S+KG  +   +++  +   T  G
Sbjct: 751 VAEQGFVVDLFSTEVDGNDQILLVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 227/754 (30%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LIDNP  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSVRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/768 (31%), Positives = 395/768 (51%), Gaps = 41/768 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    L+  ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K A
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 137 TQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +++   +LQG+ E  VDF   ++   +EP V P++ P LL NG++GIAVGMAT+IP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALID P++S E+LL +I GPDFPTGG IV+  + I E+Y  GRG   +R  
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDG-QGIREAYLTGRGSITLRGV 261

Query: 256 WCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
              EE+  G        ++++E PYQV K+  +EK+AEL+   R+  + D+RDES     
Sbjct: 262 ARFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGM 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  +P  +++ ++ L+ +++ F + +  L  G+ PQ + L  IL+ +L  R  
Sbjct: 322 RVVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGK-PQQLSLKQILQHFLQFREA 380

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
            L R     +Q + R+ E + G+++A  +++ +I ++R   +    K  + +R   T  Q
Sbjct: 381 TLKRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQ 440

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + IL + LR L  LE  ++  E   L A   ++  LL   ++  N +  E+R +K+ F+
Sbjct: 441 AETILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFA 500

Query: 488 KSTDLGRRRTTFC---EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-SHSVDLSAL 543
                  RRT      E+             E     + ++ +G++R L        S  
Sbjct: 501 DP-----RRTQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRSNP 555

Query: 544 HFKE--GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
             +E   D+L           IL+L+  G+A+T+P   +    G    + L+  L + + 
Sbjct: 556 AQRELGEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEP 615

Query: 602 IVTAFVYDS-----------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           IV AF  D               L+V+S +G    V  +E++  +++G   LK+   +++
Sbjct: 616 IVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDEL 675

Query: 651 KLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI- 705
                    H    V +     ++L    +QIP M R   +   + + G    ++   + 
Sbjct: 676 GWAALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAA-MGSPALRLGRTEQIVGMALL 734

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +G+  + S      R     +  L ++G VG        +    + 
Sbjct: 735 PPQGILVLASRSGYLKRLPLGEIPIL-EQGKVGVSAFHFSNKGDGLVG 781



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 30/205 (14%)

Query: 516 EKEPITVVISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHT-TD--RILLL 566
             E   VV+S +G I+ +             + L  KEGD L  A   H       ++L 
Sbjct: 634 PGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLA 693

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           ++ G+   L A  +        G      + L   + IV   +      L++ S  G   
Sbjct: 694 TSGGRVLRLDAEQIPLMGRAAMGSP---ALRLGRTEQIVGMALLPPQGILVLASRSGYLK 750

Query: 625 IVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGD-------HVAVVGENRKLLIF 673
            +   EI     +GK  +      +  + +  +V    D        V V+ E+ ++  F
Sbjct: 751 RLPLGEI-PILEQGKVGVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSF 809

Query: 674 SIDQIPEMSRGKG----VRLQSYKD 694
           S ++IP   R  G    V+ +  ++
Sbjct: 810 SPEEIPLQGRSGGGSLLVKGEQVRE 834


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/759 (34%), Positives = 422/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q ++
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSSFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ E + LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/459 (11%), Positives = 146/459 (31%), Gaps = 35/459 (7%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELII------AKRIPLLEDIRDESAEDVRIVLFPKNR 318
              I+   I + ++K++    + E +        + I +++  +       R+V      
Sbjct: 359 RKNIIERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSSFGLS 418

Query: 319 SLDPDLLMES-IFMLSDMETR-----FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            +  + +++  +  L+ +E       F + +  L       ++    I+         + 
Sbjct: 419 EIQANSVLDMRLQKLTALEIFKLEEEFNI-LLSLIKDYEDILLNPVRIINIIREETINLG 477

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +    R   I    E+LK  +   +  + I+ ++  +   K +  + + L         
Sbjct: 478 LKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGG---- 533

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
               + L   +       +  L         ++++  + +   A EI++     +     
Sbjct: 534 ----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR--ASKGQN 587

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SVDLSALHFKE 547
                   +          + + +   + +  ++    R   +      S  +  +   +
Sbjct: 588 ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 647

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            D +  A      ++++ LS  G A+   + ++       + +  +  L      V    
Sbjct: 648 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLS 706

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVA 662
                 LL+VS  G    +  S+I    R    +      +K     +  +     D + 
Sbjct: 707 VKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEIL 766

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +V +  K L     ++ E  +  +G+++    +  +  V
Sbjct: 767 LVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSV 805


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 223/759 (29%), Positives = 408/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGGI V+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGI-VQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE       V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +  NM  ++    P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT-EGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L     +  G+ +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++P+   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELPDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHFAVI 814


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/765 (34%), Positives = 409/765 (53%), Gaps = 49/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 8   TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 60  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL 
Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + +  +      R T  E +     T        EPIT+++S 
Sbjct: 480 DENEKRKLIIKEMQADMKQYGDA------RRTLVEEAGRAVLT---QTTADEPITLILSE 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ YTL A  +  GRG 
Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  +  LI+L +    V           L+ SS G  FI + ++++   + GK  +   S
Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   + V           +       + L F I ++  M++GKG+++          
Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNASESLT 710

Query: 700 VICFKICEGLTWIDSAGRS---YNRSENDLLGWLGKRGGVGSLVP 741
                    +       R     +R    LL    KRG  G L+P
Sbjct: 711 HTAVSSEPEILIESEGRRGAAHKDRIPVSLLE--AKRGKKGKLLP 753


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/745 (29%), Positives = 384/745 (51%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H
Sbjct: 125 RLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +IE+L+  I GPDFPTGGI ++  + I ++Y  G+G   +R 
Sbjct: 185 HLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGI-IQGVDGIKKAYETGKGKIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+      ++ 
Sbjct: 244 KTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  ++  +D++  +  NM  ++    P++M L  IL  ++ H+REV+  
Sbjct: 304 ELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKK-RPKLMSLANILDAYIDHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR        K  +++++  TE Q +AI
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S    
Sbjct: 423 VSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +     + M+  E + V ++  G+++     S    +      K+ 
Sbjct: 481 ----RRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDT 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +      +TT+ +L+ +  G    +P   L     +  G+ I  ++ ++  + IV A 
Sbjct: 537 DRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL  +  G     E  +  A    K    + +  ++++  V +  G   V
Sbjct: 597 PVKEFKENQYLLFFTKNGMVKKSELLQYKAQRYSKALVAVNLKGDDEVVDVYQTDGKKQV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLT--WIDSAGR 717
            +   +   L F  ++I  +  R  GV+  + KD   +   + F   E L+     +  R
Sbjct: 657 FIATRSGYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDEDEALSTELFIATQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
              +           R   G ++ +
Sbjct: 717 GAVKKTKITEFEESARAKRGLVMVR 741


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 225/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 391/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/745 (29%), Positives = 384/745 (51%), Gaps = 25/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   L +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+  V+F   +++  SEP V P+ FPNLL NG++GI+ G AT +P H
Sbjct: 125 RLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ E+ +A +  ID P  +IE+L+  I GPDFPTGGI ++  + I ++Y  G+G   +R 
Sbjct: 185 HLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGI-IQGVDGIKKAYETGKGKIIIRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TEIP++V K+ L++K+ EL + K++  + ++RDE+      ++ 
Sbjct: 244 KTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  ++  +D++  +  NM  ++    P++M L  IL  ++ H+REV+  
Sbjct: 304 ELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKK-RPKLMSLANILDAYIDHQREVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR        K  +++++  TE Q +AI
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAKYEFTEPQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E + L A+  +++ +L+S K+ +N I  E+R VK+ +S    
Sbjct: 423 VSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLFNVIKKELRRVKKQYSTE-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +     + M+  E + V ++  G+++     S    +      K+ 
Sbjct: 481 ----RRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDT 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +      +TT+ +L+ +  G    +P   L     +  G+ I  ++ ++  + IV A 
Sbjct: 537 DRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAI 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +     LL  +  G     E  +  A    K    + +  ++++  V +  G   V
Sbjct: 597 PVKEFKENQYLLFFTKNGMVKKSELLQYKAQRYSKALVAVNLKGDDEVIDVYQTDGKKQV 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLT--WIDSAGR 717
            +   +   L F  ++I  +  R  GV+  + KD   +   + F   E L+     +  R
Sbjct: 657 FIATRSGYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDEDEALSTELFIATQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
              +           R   G ++ +
Sbjct: 717 GAVKKTKITEFEESARAKRGLVMVR 741


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 240/775 (30%), Positives = 387/775 (49%), Gaps = 52/775 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +    V L     E YL+YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL      +
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-----------VQRYPLISGQGNFGNID 122
           K AR+VGEV+GK HPHGD +VYD+LVRLAQ               R PLISG GNFG++D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLD 138

Query: 123 GDSAAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           GD AAA RYTE R+  ++E ++L  +D D VDF   ++    EPVV P++ PN+L NG S
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +A  ALI NP  ++E+L+E++ GPDFPTGG I+     I +
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQIL-GISGIAD 257

Query: 242 SYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++R GRG   VR +   EE+        I++TEIPY   KS L+ KIAEL+ +K +  + 
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVS 317

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES      ++    R     +++ +++  + +++RF  N+  +     P+V  +  
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKE-PEVFSIKR 376

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L  R  V+ RR+   +   + R  +L+G L     +D+++ ++++          
Sbjct: 377 LLEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQA 436

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+  Q +A+L + LR +  LE  +I  E ++LLA+   +  LL++ ++    + 
Sbjct: 437 LQKDFELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQASNLRELLSNKQRVLRVVE 496

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E   +K  F        RRT   E    D       +I      + +S +G+I+     
Sbjct: 497 KEALALKNEFGSP-----RRTVLEE--DGDGRIDNIDVIPNNESFLTLSEKGYIKRMQPD 549

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +  +   S    K  D +  +      D +L+ S  G  Y+  A  +   S    
Sbjct: 550 TFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRAYQVPECSRTSA 609

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  ++ +   + I + F    +     L++++SKG     E     +   +G   ++
Sbjct: 610 GVPIIQVLSIPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQ 669

Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVI 701
           +   +++K V   T  D + +   N   +     +   M RG +G+R    K+G   ++ 
Sbjct: 670 LMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAMRIKEG--DEIA 726

Query: 702 CFKICEGLTWIDSAG--------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
              I  G  W +S          +    SE   L ++ + G    +    FPR G
Sbjct: 727 AIDIVPGSVWKESPTLLCTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHG 781



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 43/250 (17%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
                   +    +   ++   V+++++G+I+  +  +        + A+   EGD LK 
Sbjct: 619 IPAGERITSIFPLSEFREDHFLVMLTSKGYIKRTELPAFSSIRPQGIVAIQLMEGDELKW 678

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD---- 609
              A  +DRI + S +G A   P     S R     ++ +  +    +I    +      
Sbjct: 679 VRLATQSDRIFIGSRNGMAMQAPC-EFRSMRRGARGLRAM-RIKEGDEIAAIDIVPGSVW 736

Query: 610 -------------------STCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEE 648
                                  LL VS  G A  V  +        + G    K    +
Sbjct: 737 KESPTLLCTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796

Query: 649 KMKLVVKV--------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGIS 698
           ++  +  V        + + + V  +      F + +I   SR G+G++L     D  + 
Sbjct: 797 RLASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVK 856

Query: 699 DVICFKICEG 708
            V      + 
Sbjct: 857 SVSVVAASDS 866


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 216/744 (29%), Positives = 389/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L       TT  +L+ +T G     P   L     +  GE + Q + +   N++++   
Sbjct: 535 RLLFVQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVIYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++  N   L F+I+++P +  +  GV+  + K   +              +    R 
Sbjct: 655 DVLLISRNGYALRFNIEEVPVIGAKAAGVKAMNLKADDVIQAAFICNTSSFYLLTH--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRANRGLQVLR 736


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/749 (31%), Positives = 406/749 (54%), Gaps = 30/749 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI ++  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGI-LQGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   V
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++ +   ++  +F  +D++  +  NM  ++  R   V  L  IL+ +L H+REV 
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHV-GLKTILEAYLEHQREVT 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q +
Sbjct: 361 TRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQSE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +   
Sbjct: 421 AIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFK 546
              G  R T  +   +      + M+ +E + +++S+ G+++     S + S       K
Sbjct: 478 ---GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           + D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++ 
Sbjct: 535 DEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVLN 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSE-EKMKLVVKV 656
           AFV+   D   K L+ + +G    V+ +++       TR  + ++K+ ++ +++  V +V
Sbjct: 595 AFVFENIDQDVKFLIATKEGYIKQVKLADLKPGRTYKTRASR-YIKLKTDVDEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ I 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSIIT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             G        D+   L  R   G  + +
Sbjct: 714 QRGSYKKMKVADV--PLTTRARRGVQILR 740


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/802 (30%), Positives = 406/802 (50%), Gaps = 72/802 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   ++  YL+YA+S I  RA+PD RDG KPVHRRII+AM + G D+   
Sbjct: 1   MSSKNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQ 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RY
Sbjct: 61  FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++ +++E ++  +D++ V+F++ Y++ ++EPVV P++FPNLL NG  GIAVGMAT+I
Sbjct: 121 TETKLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  LA +DN +IS+ ++++ I GPDFPTGGII+  +  I   Y  GRG  +
Sbjct: 181 PPHNLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIIL-GKNEIKNGYEKGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    +EE  R    I++  +PYQV K+ LIEKIA LI  K++  + D+RDES ++   
Sbjct: 240 IRGEIEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ ++++  ++  S +E+ F  N   ++  + P+++ L   ++ +++ R + 
Sbjct: 300 IVIELRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKK-PELLNLKQFIEIFVSFREKT 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419
           + +R+ F ++    R  IL GL IA  NIDEII+IIR    P    VS            
Sbjct: 359 IIKRTLFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSK 418

Query: 420 ---------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                           + L++ QV AIL+LRL+ L  +   +I +EL  L     K+  +
Sbjct: 419 LNKNILNINELSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKI 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           LN   +  N I  E+  +K  FS             ++     +   + +I+KE + V +
Sbjct: 479 LNDKTELINLIKNELIGIKNKFSTPRK--------TKIVDQITSVEVEDVIQKEQVIVTV 530

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +N+G+I+          K        +  +E D +      +T   +L  S  G  Y L 
Sbjct: 531 TNKGYIKRTPITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLK 590

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEE 628
              +  G  +  G+++  L+ +++   + +               ++ ++  G       
Sbjct: 591 TWKIPEGSNQSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNL 650

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
            +       GK  +K+  E+++  V  +   + V +   N K L  +  +I     R  K
Sbjct: 651 EDFKNIQSNGKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSK 710

Query: 686 GVRLQSYKDGGISDVICFKI--------------CEGLTWIDSAGRSYNRSENDLLGWLG 731
           GV+  + K+     VI   I               +    +      Y +  +       
Sbjct: 711 GVKGMNLKNN--DRVISLSILNPNIISSDKDEMKSKEEFILTITENGYGKRSSAYEFRET 768

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            RGG G +      R+G   +S
Sbjct: 769 GRGGQGIINISTTERNGNVAAS 790



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 82/244 (33%), Gaps = 29/244 (11%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP-----ITVVISNRGW 529
           I  +++  K     +   G+       +      +    + E E        V I+  G 
Sbjct: 585 IVYKLKTWKIPEGSNQSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGK 644

Query: 530 IRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           IR                A+   + D +         + +++ S +GK+  + +  +   
Sbjct: 645 IRKNNLEDFKNIQSNGKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLF 704

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS-------------TCKLLVVSSKGNAFIVEESE 630
           +G        ++L +N  +++  + +                 +L ++  G        E
Sbjct: 705 KGRSSKGVKGMNLKNNDRVISLSILNPNIISSDKDEMKSKEEFILTITENGYGKRSSAYE 764

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R G+  + +S+ E+   V       + D + +V    +++   +++I    R  +
Sbjct: 765 FRETGRGGQGIINISTTERNGNVAASFPIKSDDDIMLVTSKGQMIRVKVNEIRVAGRNTQ 824

Query: 686 GVRL 689
           GVR+
Sbjct: 825 GVRI 828



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 148/448 (33%), Gaps = 49/448 (10%)

Query: 253 RARWCVEEVGRGSWCIVVTEIP----YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +  W  ++       + + E+     YQ+   ++   +   +        ++I +E +E 
Sbjct: 409 KKTWNFKKSKLNKNILNINELSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSEL 468

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLS---DMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +++  K    D   L+  I         +   P    ++      +V  +    +  +
Sbjct: 469 YELIIKLKKILNDKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIV 528

Query: 366 AHRREVLFRRSSFRMQAIDRR--------VEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
               +   +R+        +R        V   +  +    +++ +  ++   +K     
Sbjct: 529 TVTNKGYIKRTPITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYK 588

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQIA 476
           +  + + E    +     L +L  ++     S +  L   + +   L +    +      
Sbjct: 589 LKTWKIPEGSNQS-KGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRK 647

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
             + + K I S             ++ + D+    + +   E + +  S  G        
Sbjct: 648 NNLEDFKNIQSNGK-------IAMKLDKEDEIVSVKLLKANEDVMIN-SYNGKSLRVNSK 699

Query: 530 -IRSLKSHS-VDLSALHFKEGDSLKIA------LHAHTTDRI-------LLLSTDGKAYT 574
            IR  K  S   +  ++ K  D +         + +   D +       L ++ +G    
Sbjct: 700 KIRLFKGRSSKGVKGMNLKNNDRVISLSILNPNIISSDKDEMKSKEEFILTITENGYGKR 759

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
             A         G+ I  +     N ++  +F   S   +++V+SKG    V+ +EI   
Sbjct: 760 SSAYEFRETGRGGQGIINISTTERNGNVAASFPIKSDDDIMLVTSKGQMIRVKVNEIRVA 819

Query: 635 TRK--GKTFLKVSSEEKMKLVVKVTGDH 660
            R   G    K SS+EK+   V++  ++
Sbjct: 820 GRNTQGVRIFKTSSDEKVVTAVRLADNN 847


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 224/744 (30%), Positives = 398/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+  +              +   G  
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLLTQRGSL 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
              S  ++      R   G  V +
Sbjct: 715 KRVSTEEI--PATSRAKRGLQVLR 736



 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 45/228 (19%)

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA------ 505
           ++L       ++   + +  + ++  +  +    F+ +     +R    E +        
Sbjct: 575 EHLSQTITNFET---NEEILYAEVLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSK 631

Query: 506 ---------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548
                    +   +      K    ++IS  G+        V         + A++ KE 
Sbjct: 632 SVKYAKLKDETDQIVAVAPIKLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKED 691

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--------NQ 600
           D L+ A   +T+   L L+  G    +    + +       +Q+L +L +          
Sbjct: 692 DVLQSAFICNTSSFYL-LTQRGSLKRVSTEEIPATSRAKRGLQVLRELKNKPHRVFLAGA 750

Query: 601 DIVTAFVYD--------STCKLLVVSSKGNAF--IVEESEIIANTRKG 638
                FV D        +   LLV S+KG  +   +++  +   T  G
Sbjct: 751 VAEQGFVGDLFSTEVDGNDQTLLVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 261/759 (34%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       +  +VS F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/431 (12%), Positives = 137/431 (31%), Gaps = 27/431 (6%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIV----LFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           IA   I + I +++  +       R+V    L     +   D+ ++ +  L   +    L
Sbjct: 386 IALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQANSVLDMRLQKLTALEIFKLEEEL 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +       +  L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIVIALCVNTHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++++  + +   A EI++     +             +          + + +   +
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 521 TVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++    R   +      S  +  +   + D +  A      ++++ LS  G A+  
Sbjct: 616 LLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L      V          LL+VS  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
               +  +  V
Sbjct: 795 LFLDNDSLVSV 805


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 225/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG+ S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 225/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+  + ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 217/743 (29%), Positives = 391/743 (52%), Gaps = 27/743 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDS 550
             R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D 
Sbjct: 475 --RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDR 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV 607
           L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V
Sbjct: 533 LIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEV 592

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDH 660
              +D        +  G    VE  E         K   + K+  + +++  V  +  D 
Sbjct: 593 LDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDD 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R  
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGS 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +  +        R   G  V +
Sbjct: 711 LKRVSIEEILATSRAKRGLQVLR 733


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 271/764 (35%), Positives = 414/764 (54%), Gaps = 47/764 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG 
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGD 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G  I  LI+L +    V           L+ SS G  FI +  +++   + GK  +   S
Sbjct: 593 GVPISSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADS 652

Query: 647 EEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699
            E +   V V           +       + L F I ++  M++GKG+++    + G S 
Sbjct: 653 GETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESM 711

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                  E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 THTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 755


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/830 (31%), Positives = 409/830 (49%), Gaps = 100/830 (12%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +V++ ++  ++   ++  YL+YA+S I  RA+PD RDG KPVHRRII AM + G D+   
Sbjct: 1   MVDKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQ 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F     L+ GQGNFG++DGD AAA RY
Sbjct: 61  FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE R+ +VAE ++  +D++ VDF++ Y++ + EPVV P+++PNLL NG SGIAVGMAT+I
Sbjct: 121 TETRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ E  L  IDN EI+I++L++ I GPDFPTGGII+  +  I+  Y  GRG  +
Sbjct: 181 PPHNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIII-GQNDIIPGYEKGRGSIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R    VEE  +    IV+  +PYQV K+ LIEKIAELI  K+I  + D+RDES +D   
Sbjct: 240 IRGEIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +++   +++  ++  S ++T F  N   ++  + P+++ L   +K ++  R +V
Sbjct: 300 IAITVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKK-PELLNLKQFIKIFVDFREKV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-------------- 417
           L +R+ F ++    R  IL GL I+  NIDE+I+IIR    P                  
Sbjct: 359 LTKRTLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSK 418

Query: 418 -------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                           + L+++QV AIL LRL+ L  +   +I SEL +L     K   +
Sbjct: 419 IDKDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKI 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           LN  K+  N I  E+ E+K+ F+       RRT              + +I++E + V +
Sbjct: 479 LNDKKELQNLIKTELAEIKKKFAVP-----RRTKLVGAVEN---VDVEDVIQEEKVIVTV 530

Query: 525 SNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           +N+G+I+          K      + +  +E D +       T   +L  S+ G  Y L 
Sbjct: 531 TNKGYIKRTPLTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLK 590

Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEE 628
           A  +  G     G+A+  +  +  +  I +               L+ V++ G       
Sbjct: 591 AWKIPEGSNTSKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSI 650

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPE-MSR-GK 685
            +       GK  +K+  ++K+  V  V   D V +   + K L  +  +I     R  K
Sbjct: 651 LDFENIQANGKIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSK 710

Query: 686 GVRLQSYKDGGISDVICFKICEGLT----------------------------------- 710
           G++  + K+     VI   +   +T                                   
Sbjct: 711 GIKGINLKNN--DKVISLTVLNHVTTTSEETKAYIKRTRKDDLENTDDTNFEISTKKYEE 768

Query: 711 -------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      Y +  +        RGG G +      R+G   +S
Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERNGNIAAS 818



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 53/243 (21%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           K+   + ++  G IR                A+  ++ D +         D ++L +  G
Sbjct: 632 KDNFLIFVTANGKIRKNSILDFENIQANGKIAMKLEKDDKIVSVKIVKKNDDVMLNTYSG 691

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--------------------- 609
           K+  + A  +   +G        I+L +N  +++  V +                     
Sbjct: 692 KSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEETKAYIKRTRKDDL 751

Query: 610 --------------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
                                   +L ++  G        E   + R G+  + + S E+
Sbjct: 752 ENTDDTNFEISTKKYEELKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSER 811

Query: 650 MKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICF 703
              +         D + ++    +++  ++  I    R  +GVR+    K+  +   +C 
Sbjct: 812 NGNIAASYSVKNDDDIMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVSSVCL 871

Query: 704 KIC 706
              
Sbjct: 872 TDS 874


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/749 (30%), Positives = 406/749 (54%), Gaps = 30/749 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI ++  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGI-LQGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   V
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++ +   ++  +F  +D++  +  NM  ++  R   V  L  IL+ +L H+REV 
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHV-GLKTILEAYLEHQREVT 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q +
Sbjct: 361 TRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +   
Sbjct: 421 AIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFK 546
              G  R T  +   +      + M+ +E + +++S+ G+++     S + S       K
Sbjct: 478 ---GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           + D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++ 
Sbjct: 535 DEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVLN 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSE-EKMKLVVKV 656
           AFV+   D   K L+ + +G    V+ +++       TR  + ++K+ ++ +++  V +V
Sbjct: 595 AFVFESIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASR-YVKLKTDADEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ + 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             G        D+   L  R   G  + +
Sbjct: 714 QRGSYKKMKVADV--PLTTRARRGVQILR 740


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 392/743 (52%), Gaps = 27/743 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++ 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKT 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +    
Sbjct: 240 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 299

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS
Sbjct: 300 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ 
Sbjct: 359 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVT 418

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+      
Sbjct: 419 LQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP---- 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDS 550
             R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D 
Sbjct: 475 --RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDR 532

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV 607
           L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V
Sbjct: 533 LIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEV 592

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDH 660
              +D       V+  G    VE  E         K   + K+  + +++  V  +  D 
Sbjct: 593 LDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDD 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R  
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGS 710

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +  +        R   G  V +
Sbjct: 711 LKRVSIEEILATSRAKRGLQVLR 733


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 391/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 258/759 (33%), Positives = 421/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V  F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVLNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL  LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  L++L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLL-VKVLAVRENPYLLIVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  N       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 137/431 (31%), Gaps = 27/431 (6%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLN-- 342
           IA   I + I +++  +       R+VL      +  + +++  +  L+ +E     +  
Sbjct: 386 IALNNIDEVIKIIKSSKLAKDAKERLVLNFGLSEIQANSVLDMKLQKLTALEIFKLEDEL 445

Query: 343 --MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             +  L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 KVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +       +  L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIVIALCVNTHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++++  + +   A EI++     +             +          + + +   +
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELLNLGDQEEILTIKNSKDLTDDAYL 615

Query: 521 TVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++    R   +      S  +  +   + D +  A      ++++ LS  G A+  
Sbjct: 616 LLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L     +V          LL+VS  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLLVKVLAVRENPYLLIVSENGYGKRLNMSKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
                  +  V
Sbjct: 795 LFLDSDSLVSV 805


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 229/757 (30%), Positives = 411/757 (54%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++++++E +L+ +++D V F   Y++  +EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+IS+ +L++Y+ GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDISVSQLMKYVKGPDFPTG-GIIQGIDGIKKAYETGKGRIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+    E +  G   ++VTEIPY+V KS L++KI EL   KR+  + ++RDE+      +
Sbjct: 240 RSTVETETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ D ++  ++  +D++  +  NM  +S G  P++M +  I+  +L H+ +V+
Sbjct: 300 AIELKKDVNSDAILNFLYKNTDLQISYNFNMVAISDG-RPKLMGIREIIDSYLNHQIDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ + +   ++R+ I++GL+ A   +DE+IAIIR   N+   K  +V+ F  TE Q +
Sbjct: 359 TKRTRYDLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAEFDFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A+   + ++L++     N I  E++E++  F   
Sbjct: 419 AIVTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHDALLNVIKDELKEIRTRFKTE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFK 546
                 R +  E   A+    ++ ++  E   + +S  G+I+     S + +    +  K
Sbjct: 479 ------RLSRIEAEIAEIKISKEVIVPSEETILSLSRDGYIKRTSVRSFNANRVDEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           EGD+L   L  +T    L+ +  G+   LP   L     +  G+ I  L+ + +++ ++ 
Sbjct: 533 EGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKDLGQHISQLVPIENDEYVLD 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGD 659
            F    +      ++ +  G     E  E+   TR  K    +K+   +++  V+++  D
Sbjct: 593 VFTEPDFKQNADYIMATKNGMIKKSEL-ELFKTTRFNKPLIAMKLKDNDELINVMRIEAD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  +V      L +S D++     R  GV+  + KD  + ++    I    T + +  R
Sbjct: 652 QLITIVTHTGMSLTYSTDELSSTGLRAAGVKSINLKDDDVVEMTQL-IQPNDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              +     +    KR   G  + K    R  + + +
Sbjct: 711 GAVKRIGFKVLSEAKRAQRGIKLLKELKSRPHRIVGA 747


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 21  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 80

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 81  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 141 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 201 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 259

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 260 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 319

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 320 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDN-YTPRQVGIVPILSSYIAHRRDIIVAR 378

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR  D     K  +   +  TE Q +AI+
Sbjct: 379 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKVSYDFTEEQAEAIV 438

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F      
Sbjct: 439 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLF------ 492

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 493 GNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 552

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L     +  GE + Q L +    ++I+ A 
Sbjct: 553 ELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 612

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGDH 660
           + D          + +G     E  E+        K   + K+   ++++  V  V  + 
Sbjct: 613 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDRIVAVAPVVLED 672

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +N   L F+++++P +  +  GV+  + KDG             +  +   G   
Sbjct: 673 IMIITKNGYGLRFNVEEVPVVGAKAAGVKAINLKDGDQVAAAFKSTTPSMYILTQRGSLK 732

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
              ++D+   +  R   G  V +
Sbjct: 733 RMLQDDI--PVTSRAKRGLQVLR 753


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/750 (35%), Positives = 402/750 (53%), Gaps = 41/750 (5%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE
Sbjct: 2   LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 61

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 62  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 121

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVGMAT IPSHN+ E+ +
Sbjct: 122 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 181

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G+G  RVRAR+ +E++
Sbjct: 182 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 241

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303
            RG W ++VTE+P     ++++ +I E                        + L++ +RD
Sbjct: 242 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 301

Query: 304 ESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           ES     VR+V  PK+  +D D  + ++   + +E    +N+ ++ +   P    L  IL
Sbjct: 302 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 361

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           +EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +IR  D PK  +++ F
Sbjct: 362 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 421

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL    ++   I  E++ 
Sbjct: 422 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQA 481

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             + F  +      R T  E +     T        EPIT+++S +GWIRS   H++DLS
Sbjct: 482 DMKQFGDA------RRTLVEEAGRAVLT---QTTADEPITLILSEKGWIRSRAGHNLDLS 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              FKEGD LK  L   T   +++L + G+ YTL A  +  GRG G  +  LI+L +   
Sbjct: 533 QTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAK 592

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
            V           L+  S G  FI + ++++   + GK  + V S E +   V V     
Sbjct: 593 PVAMLTGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSL 652

Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +       + + F I ++  M +GKG+++     G             +     
Sbjct: 653 INPDCKIIAATNQNRAISFPIGELKIMPKGKGLQIIGLNAGESMTHTGVSSETEILIESE 712

Query: 715 AGRS---YNRSENDLLGWLGKRGGVGSLVP 741
             R     +R    LL    KRG  G L+P
Sbjct: 713 GKRGAAHKDRIPVSLLE--AKRGKKGKLLP 740


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/754 (30%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 227/754 (30%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+YD++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ ++++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 256/759 (33%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  +EP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDEII II++       K  +V+ F L+E Q ++
Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ E + LL+  +  +++L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENILLNPARIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDRE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDFTDDAYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICISKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 143/431 (33%), Gaps = 29/431 (6%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           I++I ++I + ++      +D     V    L     +   D+ ++ +  L   +     
Sbjct: 391 IDEIIKIIKSSKL-----AKDAKERLVANFGLSEIQANSVLDMKLQKLTALEIFKLEDEF 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NVLLSLIKDYENILLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +       +  L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIVIALCVNTHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVK-----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
              ++++  + +   A EI++       +  S+  +LG R       +  D       ++
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTDDAYLLL 617

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
                 +        +++KS  V +  +   + D +  A      ++++ +S  G A+  
Sbjct: 618 TTASGKIARFESTDFKTVKSRGVIV--IKLNDKDFVTSAEIVFKDEKVICISKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L      V          LL++S  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSISKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSENDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
               +  +  V
Sbjct: 795 LFLDNDSLISV 805


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 223/744 (29%), Positives = 396/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVAVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +S +  GV+  + K                  +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVSAKAAGVKAMNLKADDALQAAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 365

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 600 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 659

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 660 QDLLDVFLVNNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 719

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 720 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 753



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 687 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 746

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 747 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 803

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 804 GQVMEVHEMHSAVI 817


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/749 (30%), Positives = 406/749 (54%), Gaps = 30/749 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI ++  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGI-LQGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++      I+VTEIPY+V KS L+++I EL I K++  + ++RDES  +   V
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++ +   ++  +F  +D++  +  NM  ++  R   V  L  IL+ +L H+REV 
Sbjct: 302 VVELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHV-GLKTILEAYLEHQREVT 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q +
Sbjct: 361 TRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +   
Sbjct: 421 AIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFK 546
              G  R T  +   +      + M+ +E + +++S+ G+++     S + S       K
Sbjct: 478 ---GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           + D   +    +T   + + +  G     P   ++  R    GE +   + L +++ ++ 
Sbjct: 535 DEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVLN 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSE-EKMKLVVKV 656
           AFV+   D   K L+ + +G    V+ +++       TR  + ++K+ ++ +++  V +V
Sbjct: 595 AFVFESIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASR-YVKLKTDADEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ + 
Sbjct: 654 ESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSESDEVSILT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             G        D+   L  R   G  + +
Sbjct: 714 QRGSYKKMKVADV--PLTTRARRGVQILR 740


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEILATSRAKRGLQVLR 736


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/748 (29%), Positives = 404/748 (54%), Gaps = 25/748 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F+K
Sbjct: 3   EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA
Sbjct: 63  SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP H
Sbjct: 123 KLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGI ++  + I ++Y  G+G   VR+
Sbjct: 183 NLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGI-IQGVDGIKKAYETGKGKIVVRS 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +  
Sbjct: 242 KVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + +   +F  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+  
Sbjct: 302 ELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVVAN 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +AI
Sbjct: 361 RTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E + L    ++   +L++       I  E+ ++++ F     
Sbjct: 421 VMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHDALLQVIKSELTDIRKRFK---- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R +  E   A+    ++ M+  E + + I+ +G+I+   + S + S    +  K+G
Sbjct: 477 --SERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLKDG 534

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ L+  + +V  +
Sbjct: 535 DSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVDVY 594

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGDHV 661
               +      ++ +  G       S +   TR  K    +KV   +++  V+++  D +
Sbjct: 595 NEQSFKDDAFYVLATRNGMIKKSNVS-LFKTTRYNKPLVAMKVKDNDELINVIRLNEDQL 653

Query: 662 A-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             V+      L +S +++ +   R  GV+  + KD     +      +  + I +  R  
Sbjct: 654 ISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSDS-SIIMATQRGA 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +  +  +    KR   G  + K   ++
Sbjct: 713 VKRISYKILQQAKRAQRGITLLKELKKN 740


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/754 (32%), Positives = 397/754 (52%), Gaps = 39/754 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E V    L     E Y++YA+S +  RA+PD+RDG KPVHRRI++AM E+GL     +KK
Sbjct: 88  ERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKK 147

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE 
Sbjct: 148 CARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRYTEC 207

Query: 135 RMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+  + E ++L  ++++ VDF   ++    EP + P++ PNLL NG SGIAVGMAT+IP 
Sbjct: 208 RLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPP 267

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A  ALI NPE ++++LLEY+ GPDFPTGGII+ +   +  ++R GRG   +R
Sbjct: 268 HNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILE-AFRTGRGRVVIR 326

Query: 254 ARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            +  +E  +       I++ EIPYQ  K+ L+EKIA+L+  K +  + DIRDES      
Sbjct: 327 GKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMR 386

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R  DP +++ +++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  V
Sbjct: 387 IVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQ-PKLMGLKELLQAFLDFRCSV 445

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428
           + RR+ F++     R  I++G+++   N+DE+I  IR           +   F L+E Q 
Sbjct: 446 VERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQA 505

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AIL++ LR L  LE  +   E  +L  +  K++ LL+S KQ    I  E  E+K  F  
Sbjct: 506 EAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKF-- 563

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDL 540
                 RR+   +    D   +   +I  E + + IS +G+++ +K          ++  
Sbjct: 564 ---FNPRRSMLEDTDSGDLEDI--DVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGK 618

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
           S    +  D++   L     D++L  S  G  Y+ PA  +   S    G  +  ++ L+ 
Sbjct: 619 SVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSD 678

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            + I +      + +   L++++  G    V  +   +    G   +++  ++++K V  
Sbjct: 679 GERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDELKWVKC 738

Query: 656 VTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--- 710
            + +  VA+  +N  +++     I  + R  +G      K+G    V    I        
Sbjct: 739 CSNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLKEG--DKVASMDIIPDALQKE 796

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
               ++   R Y   +   L ++ + G  G  VP
Sbjct: 797 LDKTLEVQQRQYRSMKGPWLLFVSESG-YGKRVP 829



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 41/244 (16%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               + +  +    +   V+++  G+I+ +  +         + A+     D LK     
Sbjct: 680 ERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDELKWVKCC 739

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
              D + + S +G     P  N+    G      + + L     + +  +     +    
Sbjct: 740 SNNDFVAMASQNGMVILTPCANI-RALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELD 798

Query: 614 -----------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVV 654
                            LL VS  G    V  S    +   R G    K SSE+ +  V 
Sbjct: 799 KTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDCLAAVF 858

Query: 655 KV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
            V         + + V +V ++  +    +  I   SR  +GV L   +  G I      
Sbjct: 859 VVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQSASLI 918

Query: 704 KICE 707
              +
Sbjct: 919 SAAD 922


>gi|158338824|ref|YP_001520001.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 422/767 (55%), Gaps = 35/767 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    V A +L   +E+ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLSSGKVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R++ +  + +L+ + E  V+F   ++    EP V P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +A +ALID+P++++EKL+  + GPDFPTGG IV  ++ I+++Y  GRG
Sbjct: 186 TNIPPHNLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIV-GKQGIIDAYTNGRG 244

Query: 249 GFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              VRA   +EE+  G        I+VTE+PYQV K+  IEKIA LI   RI  + D+RD
Sbjct: 245 SITVRAVTSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRD 304

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R   P  ++E ++ L+ +++ F + M  L  G VP  + L  +L++
Sbjct: 305 ESDREGMRIVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALVNG-VPLQLSLKEVLQK 363

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           +L  R + L RR   +++    R  +++GL+ A  ++D++I I+R+       K  + S+
Sbjct: 364 FLDFREQTLTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKSQ 423

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+ +Q DAIL + +R L  LE+  ++ E D+L  E   ++ LL +  +    +  ++R
Sbjct: 424 FQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLERLLGNRHELLKALKKDLR 483

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +K+ +S       RRT       A K  +  A +  E + V ++ RG+ R ++      
Sbjct: 484 ALKKQYSDP-----RRTVI--HGAAAKTEIFAAPVSDESVIVELNQRGYARCMRVSKRKN 536

Query: 541 SALHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
           +A            D          T  +LL +  GKAY +   ++   S +G G+ +  
Sbjct: 537 NAPDLSGELADVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQSIPFTSSKGKGKPLVT 596

Query: 593 LIDLN-HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           L+  +  + +I+  F+      T +L+++S +G    +  SE    T +G    K+ S +
Sbjct: 597 LLPDSGRDDEIIARFLSTEISDTSQLILLSQQGKIKRLPMSEFAEMTSRGLGAAKIKSGD 656

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKI 705
           ++  VVK   + +VA+   + +LL   I +IPEM R  +G ++    K   I  +   + 
Sbjct: 657 QLGWVVKAEQETNVAIATSSGRLLNIPITEIPEMGRTAQGNQVFRLRKQESIVGLAAVRD 716

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              L  I S  + Y +     L  LGK G +G+   +   +S   ++
Sbjct: 717 DADLLLISS--KGYCKRLPIDLLRLGKVGDLGTQAMQFMIKSDGLIA 761


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/759 (29%), Positives = 408/759 (53%), Gaps = 27/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M   G  +   F
Sbjct: 1   MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E IL+ +++D VDF   Y++ + EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L  IDNP++++++L++YI GPDFPTGGI V+  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGI-VQGIDGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+VTEIPY+V KS L++KI EL   K++  + ++RDE+      V
Sbjct: 240 RAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++   ++  ++  +D++  +  NM  ++    P++M +  I+  +L H+ EV+
Sbjct: 300 AVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT-EGRPKLMGIKPIISSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+SF ++  + R+ I++GL+ A   +DE+IA+IRN       K  +V  +  TE Q +
Sbjct: 359 TRRTSFDLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L  +   +  +L +     + I  E+ E+K+ F + 
Sbjct: 419 AIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV- 603
           E D +   +  +T D  ++ +  G+   +P   L     +  G+ +  ++ +  ++ +V 
Sbjct: 533 ERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVD 592

Query: 604 --TAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
             T   ++    ++  + +G       S   +  T K    +KV   + +  V+ V  D 
Sbjct: 593 CYTVSEFNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADA 652

Query: 661 ----VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      L + + ++ +   R  G++  + KD     V+   I    T + + 
Sbjct: 653 SSQLITLLTHRGMSLTYPMSELLDTGLRATGIKAINLKDEDHV-VLADHIQTEDTILIAT 711

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +  +  +    KR   G  + K   +   + +++
Sbjct: 712 QRGALKRISFKVLQQAKRAQRGITLLKELKKQPHRVVAA 750


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/744 (29%), Positives = 397/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+   + S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSTRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQSAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736



 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 75/228 (32%), Gaps = 45/228 (19%)

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA------ 505
           ++L       ++   + +  + ++  +  +    F+ +     +R    E S        
Sbjct: 575 EHLSQTITNFET---NEEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSK 631

Query: 506 ---------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548
                    D   +      K    ++IS  G+        V         +  ++ KE 
Sbjct: 632 SVKYAKLKDDTDQIVAVAPIKLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKED 691

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-------- 600
           D L+ A   +T+   L L+  G    +    + +       +Q+L +L +          
Sbjct: 692 DVLQSAFICNTSSFYL-LTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGA 750

Query: 601 --------DIVTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKG 638
                   D+ +  + ++   LLV S+KG  +   +++  +   T  G
Sbjct: 751 VAEQGFIGDLFSTDMEENDQTLLVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|332755278|gb|EGJ85642.1| DNA gyrase, A subunit [Shigella flexneri K-671]
          Length = 784

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 220/707 (31%), Positives = 341/707 (48%), Gaps = 66/707 (9%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 1   MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 60

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+
Sbjct: 61  TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 120

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K
Sbjct: 121 IPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 179

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++  F
Sbjct: 180 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSF 239

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  N
Sbjct: 240 GINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 298

Query: 400 IDEIIAIIRNEDKPKPV-------------------------------------MVSRFS 422
           ID II +IR+   P                                            + 
Sbjct: 299 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 358

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V
Sbjct: 359 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 418

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LK 534
           +E F        RRT   E++        + +I +E + V +S++G+++          +
Sbjct: 419 REQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQR 470

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592
                 SA   KE D +   L A+T D IL  S+ G+ Y++    L        G  I  
Sbjct: 471 RGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVN 530

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L  ++ I        ++   K+ + ++ G       +E       GK  +K+   ++
Sbjct: 531 LLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDE 590

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE 707
           +  V   +G D V +     K++ F    +  M     GVR     +G    V+   +  
Sbjct: 591 LIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG--DKVVSLIVPR 648

Query: 708 GL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           G    + +    Y +           R   G +  K   R+G  + +
Sbjct: 649 GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 695



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 535 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 594

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 595 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 651

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 652 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 711

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 712 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 763


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/765 (35%), Positives = 415/765 (54%), Gaps = 48/765 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAEL---------------- 289
           +G  RVRAR+ +E++ RG W  ++VTE+P     ++++ +I E                 
Sbjct: 242 KGSVRVRARYEIEKLARGQWRRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDR 301

Query: 290 --IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
                  + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ +
Sbjct: 302 LNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVM 361

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           + +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I 
Sbjct: 362 MGLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIK 421

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           +IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++ LL
Sbjct: 422 VIRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILL 481

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
               ++   I  E++   + F  +      R T  E +     T        EPIT+++S
Sbjct: 482 GDENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILS 532

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            +GWIRS   H++DLS   FKEGD LK  L   T   +++L + G+ Y++ A  +  GRG
Sbjct: 533 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRG 592

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  +   
Sbjct: 593 DGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTAD 652

Query: 646 SEEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698
           S E +   V V           +       + L F I ++  M++GKG+++    + G S
Sbjct: 653 SGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGES 711

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
                   E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 712 MTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/785 (31%), Positives = 404/785 (51%), Gaps = 50/785 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +  G         IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    + +++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN       K    +
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE  +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
           R +K  F        RRT   +  +  K++    + ++EP T  +S +      K+ S+ 
Sbjct: 484 RSLKRKFGDP-----RRTRIVQPPKTPKSSSTPNVKKEEPPT-TLSPKTEESPRKTPSLT 537

Query: 539 ------------------DLSALHFKEG---DSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                               ++    +G   DS            +++++  GKAY +  
Sbjct: 538 LFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVITDAGKAYPVAV 597

Query: 578 GNLLSGRGHGEAIQLLIDL----NHNQDIVTAFVYDSTC--KLLVVSSKGNAFIVEESEI 631
             +         +  L+      + N+ I   FV +      LL+++ +G    V+ SE+
Sbjct: 598 AEIPPLTLQAIPLLSLLPKGAQRDANRVIDAGFVPNDPHGYDLLLLTQQGRIKRVKMSEL 657

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGV 687
              T +G   +K+   +++  V     G  VA+     ++L + +    IP M R  +G 
Sbjct: 658 SDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVTDEVIPLMGRSAQGN 717

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +    ++ G + V C  +      +  +   Y +  +     LGK G +G+   +   ++
Sbjct: 718 QALKLRNVGETVVNCLTLHSQGEVLLISSLGYGKRLSLTELRLGKLGDLGTQCLQFTQKT 777

Query: 748 GKFLS 752
            K   
Sbjct: 778 DKLAG 782


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/770 (34%), Positives = 420/770 (54%), Gaps = 45/770 (5%)

Query: 5   NISNSNTLV--EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           N ++ +TL   ++   A++L    E  YL YALS +K RA+PD+ DG KPV RRI+++M 
Sbjct: 4   NPNDFSTLPPGDDGGDALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQ 63

Query: 63  EMGLDFGA----AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
            MGL F         K AR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPL+ GQGNF
Sbjct: 64  RMGLAFAGAGGAKPVKCARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNF 123

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+ DGD AAA RYTEAR+  +A L+L  +DE  +DF   Y+    EP + P++ P +L N
Sbjct: 124 GSRDGDGAAAMRYTEARLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLN 183

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G SGIAVG+AT +PSHN++E+  A +ALI +  +S E L   +  PD+P GG I+ S   
Sbjct: 184 GASGIAVGLATEVPSHNLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETD 243

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------- 289
           I E+YR GRG  +VRARW +EE+ RG W +VVTE+P      R++E+I EL         
Sbjct: 244 IREAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGK 303

Query: 290 ---------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                      A  + +L+ +RDES +D  VR+V  P++R+++   L+  +   + +E  
Sbjct: 304 KALSTEQVQNKALLLSVLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECS 363

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            P+N+ ++     P    L  IL EW+  R+  + RR+  R+  +  R+ +L+G  +  L
Sbjct: 364 APINLTMVGADGRPTQKSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLL 423

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           NIDE+I IIR  D+PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L  E+
Sbjct: 424 NIDEVIRIIRESDEPKAALIARFALSDRQAEDILEIRLRQLARLEAIRIEQELAELRTEQ 483

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            K+D +L +       +  EI       + +   G  R T  +  +       +  +  E
Sbjct: 484 GKLDDILANPGTLRRLLIREIE------ADAKAHGDARRTLIQAEKRAVV---EVKVVDE 534

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           P+T+V+S +GW+R+   H  D +   FK GD L       T D +++L +DG+ Y++P  
Sbjct: 535 PVTLVVSQKGWVRARTGHGHDPAGFAFKAGDGLYGTFECRTVDALVVLGSDGRVYSVPVN 594

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            L   RG G  I  LI+L     I+      ++  LL+  S G   + +  ++I+  + G
Sbjct: 595 TLPGARGDGVPITSLIELEAGSQILHYIAGSASTPLLLAHSGGTGLLAQIGDLISRQKGG 654

Query: 639 KTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDG 695
           K FL +   E+    + V  +H  VA +  + +LL+F +D++  + + G+G+ L    + 
Sbjct: 655 KAFLTLEPSERCLPPLPVALEHRQVACLSSSGRLLVFGLDELKRQPNGGRGLMLMDLDEA 714

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSEN-----DLLGWLGKRGGVGSLV 740
               +        +  +   GR     E+      L   LGKR   G  +
Sbjct: 715 --DALAAVATFGAVLKLVGTGRGGKVREDTLRAPSLEIHLGKRARKGKPL 762


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 221/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/843 (28%), Positives = 391/843 (46%), Gaps = 106/843 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  DN      ++++N+K + ++  + + YL YA+S I  RA+PD RDG KP  RRI+ A
Sbjct: 1   MASDNGEEP--IIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++ L   ++  K A+I G+  G  HPHGD S+Y +LVRL Q +V R  LI  QGNFG+
Sbjct: 59  MNDLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + G   AA RYTEAR++ VA  +L  ++ + VDF  TY++ + EPVV PSKFPNLL NG+
Sbjct: 119 LAGLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMATSIP  N+ E+CEA   LIDNP+ +I+ +L+ + GPDFPTGGII   R  I 
Sbjct: 179 SGIAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIIC-GRYGIR 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y  GR    +RAR   E   +    IVVTEIPY   + R+ EK+  L+   R+  +  
Sbjct: 238 KGYATGRSTITLRARTHFETEKQSD-VIVVTEIPYMETRDRIREKLETLVRDDRVKGISR 296

Query: 301 IRDESAEDV----RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           I D +  +V      +     R  D ++++  +F  S ++  F + +  L  G  P+ + 
Sbjct: 297 IVDLTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALV-GNRPETLS 355

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKP 413
           +  ++++++ HR +V+ RR+ F +    +R   ++GL+IA ++IDE+I  IRN     + 
Sbjct: 356 IKELIQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEA 415

Query: 414 K----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           K                              +   +SL+ NQ +AI++++L SL  LE  
Sbjct: 416 KISLQGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLERE 475

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  E   LL    +   LL+      + I  ++  +++ +S       RRT   E    
Sbjct: 476 KLSGEHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSDK-----RRTDISEDELT 530

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHA 557
           D    +  +I +EP+ V +S RG+I+                +      E D ++    +
Sbjct: 531 D--VNRDDLITEEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVS 588

Query: 558 HTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTC 612
            T   +L ++  G+ Y     +L        G A+  L+ L  ++ +   V    +D   
Sbjct: 589 STHSYLLFITNRGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFDEER 648

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLL 671
            L++ +  G       S      + G   +K+  ++++   + V+ G+ + +   +   +
Sbjct: 649 FLVMATRNGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAI 708

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSEN----- 724
            F+      M R  +GV+       G   VI   I +  T  +      Y +        
Sbjct: 709 RFAQSDARSMGRNTRGVKGIKLSKSG--HVIGMVIADPETCLLTVCENGYGKRTPFGFIP 766

Query: 725 ----------------------------DLL--------GWLGKRGGVGSLVPKGFPRSG 748
                                       D              +RGG G    +   R+G
Sbjct: 767 PAEEQEEEVLEAEEEITAEPDSDSEENTDEEQETRSGMHYRRQRRGGKGIRDIRTSARNG 826

Query: 749 KFL 751
             +
Sbjct: 827 NAV 829



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 57/234 (24%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLS 567
             ++E   V+ +  G I+     +        + A+   E D L  AL     + +LL +
Sbjct: 643 EFDEERFLVMATRNGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLAT 702

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           +DG A      +    R  G   + +  I L+ +  ++   + D    LL V   G    
Sbjct: 703 SDGMAIRFAQSD---ARSMGRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKR 759

Query: 626 VEES-----------------------------------------EIIANTRKGKTF--- 641
                                                              R GK     
Sbjct: 760 TPFGFIPPAEEQEEEVLEAEEEITAEPDSDSEENTDEEQETRSGMHYRRQRRGGKGIRDI 819

Query: 642 -LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                +   + ++     D V +V  + K+      +I ++ R  +GVR+ +  
Sbjct: 820 RTSARNGNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVITLD 873



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF 641
           R  G+ I+ +     N + V         ++L+V++ G    V   EI    R   G   
Sbjct: 810 RRGGKGIRDIRTSARNGNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRV 869

Query: 642 LKVSSEEKMKLVVKVTGD 659
           + + + +K+  + ++  +
Sbjct: 870 ITLDTNDKLVSLARIPAE 887


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHG  S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 390/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ G DFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEILATSRAKRGLQVLR 736


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  
Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIIN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R  F +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI
Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +     
Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
            G  R T  E    +       ++ +E + V +++ G+I+     S   S    +  KEG
Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTA 605
           D L  A   +T D +LL++  G     P   L   R    GE I Q +++L  ++ I+  
Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTG 658
           + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++  V     
Sbjct: 597 YPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTND 656

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + + ++P +  +  GV+  + K+            EG T  + 
Sbjct: 657 QDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G +V +   ++
Sbjct: 717 VTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 750



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 684 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 800

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 801 GQVMEVHEMHSAVI 814


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQV-GLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 475 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDH 660
           + D   T   L  +  G     E  E     T K K+    K+    + +  V  +  D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDNSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVANTQSFYLLTQRASLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+     KR G G  V +
Sbjct: 715 RVATADI--PQAKRAGRGLQVLR 735



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 29/158 (18%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++I+ +G+     +  V         + A++ K+ D+++    A+T     LL+   
Sbjct: 653 DDIMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVANT-QSFYLLTQRA 711

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNH-----------------NQDIVTAFVYDSTCK 613
               +   ++   +  G  +Q+L +L                    +  + A   + T +
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELKTKPHSVFTAGPVFTENAGGEIDLLATPVEETPQ 771

Query: 614 LLVVS-SKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
            L+V+ + G    V+ S   +   T  G     ++ +E
Sbjct: 772 TLLVTATTGETEEVDLSLLNLSDRTSNGSFIEGLADKE 809


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 221/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/744 (30%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDERTLYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     +E D
Sbjct: 478 ---RLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRTSPRSFAASTLEEIGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K      V           +   G  
Sbjct: 655 DVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKADDEIQVAFICNTSSFYLLTQRGSL 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
              S  ++      R   G  V +
Sbjct: 715 KRVSTEEI--PATSRAKRGLQVLR 736


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEINKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIRLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K                  +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 212/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+ 
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSC 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQV-GLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E D+L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGDERTMFNVMKRELRDIKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S    +  ++ D
Sbjct: 475 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASMIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + + + +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDH 660
           + D   T   L  +  G     E  E     T K K+    K+  + + +  V  +  D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVANTQSFYLLTQRASLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+     KR G G  V +
Sbjct: 715 RVATADI--PQAKRAGRGLQVLR 735



 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 29/171 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           D   +      +    ++I+ +G+     +  V         + A++ K+ D+++    A
Sbjct: 640 DSDFIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAAGVKAINLKDDDTVQAVFVA 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH-----------------NQ 600
           +T     LL+       +   ++   +  G  +Q+L +L                    +
Sbjct: 700 NT-QSFYLLTQRASLKRVATADIPQAKRAGRGLQVLRELKTKPHRVFTAGPVFTENAGGE 758

Query: 601 DIVTAFVYDSTCKLLVVS-SKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
             + A   + T + L+V+ + G    V+ S   +   T  G     ++ +E
Sbjct: 759 IDLLATPVEETPQTLLVTATTGETAEVDLSLLNLSDRTSNGSFIEGLADKE 809


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E +NL+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESENLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  +    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I Q + +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 476 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 533 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 592

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 593 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 653 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 711 SLKRVSIEEILATSRAKRGLQVLR 734


>gi|332527919|ref|ZP_08403953.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
 gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/768 (34%), Positives = 417/768 (54%), Gaps = 44/768 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA---- 70
           E   A++L    E  YL YALS +K RA+PD+ DG KPV RRI++AM  MGL +      
Sbjct: 11  EPADALTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGA 70

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSAR+VG+V+G+ HPHGD + YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA R
Sbjct: 71  KPVKSARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMR 130

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR+  +A L+L  +DE  VDF+  Y+    EP   P++ P +L NG SGIAVG+AT 
Sbjct: 131 YTEARLAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATE 190

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IPSHN++E+  AA+ LI +P ++ + L   + GPDFP GG I+ S   I  +Y  GRG  
Sbjct: 191 IPSHNLREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSL 250

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIA 292
           +VRARW +E++ RG W +VV E+P      R++E+I EL                  +  
Sbjct: 251 KVRARWTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQ 310

Query: 293 KRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             + +L+ +RDES++D  VR+V  PK+R++    L+ ++   + +E   P+N+ ++    
Sbjct: 311 TVLAVLDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADG 370

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            P    L  +L+EW+  R++ + RR+  R+  +  R+ +L+G  +  LNIDE+I IIR  
Sbjct: 371 RPTQKSLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRES 430

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           D+P+  +++RF+L+E Q D IL+LRLR L +LE  +I+ EL  L   + +++ +L S   
Sbjct: 431 DEPRAALIARFNLSERQADDILDLRLRQLARLEAIKIEQELKELRETQARLEEILASPAV 490

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +  EI       + +   G  R T  +  R   A ++           V+S +GW+
Sbjct: 491 LKRTLIREIE------ADAKACGDERRTLIQEERRAVAEIRVVDEPVTV---VVSQKGWV 541

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
           R+LK H V+ S L FK GD+L       + D +L+    G+ Y++   +L  GRG G  I
Sbjct: 542 RALKGHEVERSTLGFKAGDALYATFACRSVDTLLVFGDRGRVYSVAVSSLPGGRGDGVPI 601

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             LI+L     I   +   +   LL+ +S G   + +  ++    R GK+FL + + E+ 
Sbjct: 602 TTLIELEAGTAIAHYWAGAADTTLLLANSGGFGLLAKAGDLHGRQRAGKSFLTLEAGERP 661

Query: 651 K--LVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICE 707
                V     + A +  + +LL++ +D++    + G+G+ L        + ++    C 
Sbjct: 662 LEPWAVAAGQTNAACLAADGRLLVYPLDELKHQPNGGRGLTLMDV--DAATPLVAVAACA 719

Query: 708 GLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGSLVPKGFPRSGKF 750
               +  +GR     + ++        +GKR   G  + +GF +    
Sbjct: 720 QSVLVVGSGRGGKARDEEIRNSAFTSCIGKRARKGRKL-EGFQKVAAL 766


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D       V+  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 YVVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEILATSRAKRGLQVLR 736


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/745 (29%), Positives = 392/745 (52%), Gaps = 28/745 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ-QWNQIACEIREVKEIFSKSTD 491
            L+L  L   +   ++ E   L  +   + +++   ++  +N +  E+REVK+ F+    
Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERRTMYNLMKKELREVKKKFATP-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S   S L     ++ 
Sbjct: 477 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+  
Sbjct: 533 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYV 592

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D        +  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 593 EVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 653 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--R 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
              +  +        R   G  V +
Sbjct: 711 GSLKRVSIEEILATSRAKRGLQVLR 735


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI E+ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK  F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGDERTMYNLMKKELRDVKRQFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFSASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L       TT  +L+ +T G     P   L     +  GE + Q + +   N++++   
Sbjct: 535 RLLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVLYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYRSKSVKYAKLKDDSDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K     ++    IC   ++     R 
Sbjct: 655 DVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKAD--DELQAAFICNTSSFYLLTQRG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSTEEIPATSRAKRGLQVLR 736


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/759 (34%), Positives = 424/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  ++ D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 135/431 (31%), Gaps = 27/431 (6%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRF---PL 341
           IA   I + I +++  +       R+V       +  + +++  +  L+ +E       L
Sbjct: 386 IALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQANSVLDMKLQKLTALEIFKLEEEL 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +          L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIAIALCVNSHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++++  + +   A EI++     +                        +   +   +
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGAQEEILTIKNSKDFTDDSYL 615

Query: 521 TVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++    R   +      S  +  +   + D +  A      ++++ LS  G A+  
Sbjct: 616 LLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L      V          LL++S  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
               +  +  V
Sbjct: 795 LFLDNDSLISV 805


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 223/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+ S   
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATS--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQSITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIRLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K                  +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 377/743 (50%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAAEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P +++++L+  + GPDFPTGGI ++  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPNVTVDELMTVMKGPDFPTGGI-IQGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IV+TE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +  NM  +     P +M L  +L  ++AH++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNR-RPTMMTLPLLLDAYIAHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K        +F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +       ++  E + V ++  G+I+   + S    +      K+ 
Sbjct: 481 ----RRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L     +  G+ I  ++    ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTGEDESIIAVY 596

Query: 607 VYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD- 659
            ++        +   +  G       ++  A TR  K    + V + + M     VT D 
Sbjct: 597 GFETFEQPNTYVFTATKDGQIKRSPLADY-AVTRYSKPIKTMNVKAGDAMIYASFVTDDV 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGR 717
            + +  +    + F ++++P    +  GV+  + KDG  +  V   +       +    R
Sbjct: 656 ELMLTTDTAYAIRFPMEELPVTGVKTGGVKGITLKDGEALVGVNVLQPDVTQYVVIVTQR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLV 740
              +  N     +  R   G  V
Sbjct: 716 GAVKKMNVAEVEVAGRAKRGLKV 738


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/765 (30%), Positives = 391/765 (51%), Gaps = 50/765 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F+K AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYTE R+       L      
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFLDIDAIF 120

Query: 151 A---VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
               VDF   ++    EP + P++ P+LL NG+SGIAVGMAT+IP HN+ E+ +    +I
Sbjct: 121 IIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSVMI 180

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVGRGS 265
           +NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG   +R +  +E  +V    
Sbjct: 181 ENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGRVVMRGKTDIETIDVKSKR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES      V+    R  DP ++
Sbjct: 240 SAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAIV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + +++ F  NM  +  G+ P++M L  IL+ ++  R  V+ RR+ F++     
Sbjct: 300 LNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFIDFRCSVIERRARFKLSQALE 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  I++G++I   N+D +I IIR   N    +  ++  F L++ Q +A+L++ LR L  L
Sbjct: 359 RKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLSDKQAEALLDITLRKLTSL 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQW--------------NQIACEIREVKEIF-- 486
           E  +   E  +L  E  K++ LL++ K  +              N +  E++ +  +F  
Sbjct: 419 ERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDGLDYLRAEINVVIRELKLMWSLFKL 478

Query: 487 ------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------ 534
                          R +F E S          +I  E + +++S +G+++ +K      
Sbjct: 479 ILQEATDLKNKFATPRRSFIEDSA-STEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNL 537

Query: 535 --SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
               ++  S    +  D+    +   T D +L  S  G  Y+  A  +        G  +
Sbjct: 538 QNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPL 597

Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             L+ L+  + I +      +     L++++  G    V  +   A    G   ++++  
Sbjct: 598 VQLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPG 657

Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +++K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G     +    
Sbjct: 658 DELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIP 717

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  ++  R  + S   LL       G+G  VP    R G F
Sbjct: 718 ATSHNMPETYSRVRDLSPPWLLFIADN--GIGKRVPLNAFRQGNF 760



 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++   V+++  G+I+ +  ++        + ++    GD LK        D + L S +G
Sbjct: 620 EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNG 679

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----------------L 614
               +   N L   G      L + L     + +  +  +T                  L
Sbjct: 680 MVI-VNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWL 738

Query: 615 LVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVAV 663
           L ++  G    V  +        R G    K+  +  +  V  V         + + V +
Sbjct: 739 LFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVL 798

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           V ++  +    +  I   SR  +GV L   +  G
Sbjct: 799 VSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 832


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/750 (29%), Positives = 405/750 (54%), Gaps = 25/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGI-IQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   +F  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +
Sbjct: 359 ANRTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    ++   +L++       I  E+ ++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHDALLQVIKSELTDIRKRFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   A+    ++ M+  E + + I+ +G+I+   + S + S    +  K
Sbjct: 477 ----SERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ L+  + +V 
Sbjct: 533 DGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGD 659
            +    +      ++ +  G       S +   TR  K    +KV   +++  V+++  D
Sbjct: 593 VYNEQSFKDDAFYVLATRNGMIKKSNVS-LFKTTRYNKPLVAMKVKDNDELINVIRLNED 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L +S +++ +   R  GV+  + KD     +      +  + I +  R
Sbjct: 652 QLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSDS-SIIMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +  +  +    KR   G  + K   ++
Sbjct: 711 GAVKRISYKILQQAKRAQRGITLLKELKKN 740


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D + V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQV-GLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 475 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDH 660
           + D   T   L  +  G     E  E     T K K+    K+  + + +  V  +  D 
Sbjct: 595 ILDDFETGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAAGVKTINLKDDDTVQAVFVANTQSFYLLTQRASLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+     KR G G  V +
Sbjct: 715 RVATADI--PQAKRAGRGLQVLR 735



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 86/255 (33%), Gaps = 47/255 (18%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKI-DSLLNSGK--------QQWNQIACEIRE 481
           + ++R + L       +   + NL  ++E +   +L+  +        +       E +E
Sbjct: 565 LPDIRWKDL----GEHLSQTITNLSKDEEVLYAEILDDFETGTYLAATKLGQIKRFERKE 620

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--- 538
                       + ++      + D   +      +    ++I+ +G+     +  V   
Sbjct: 621 F-----TPWRTYKSKSVKYAKLKDDSDFIVTVTPIQLDDIMIITQKGYALRFNADEVPVV 675

Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 +  ++ K+ D+++    A+T     LL+       +   ++   +  G  +Q+L
Sbjct: 676 GAKAAGVKTINLKDDDTVQAVFVANT-QSFYLLTQRASLKRVATADIPQAKRAGRGLQVL 734

Query: 594 IDLNH-----------------NQDIVTAFVYDSTCKLLVVS-SKGNAFIVEES--EIIA 633
            +L                    +  + A   + T + L+V+ + G    V+ S   +  
Sbjct: 735 RELKTKPHRVFTAGPVFTENAGGEIDLLATPVEETPQTLLVTATTGETAEVDLSLLNLSD 794

Query: 634 NTRKGKTFLKVSSEE 648
            T  G     ++ +E
Sbjct: 795 RTSNGSFIEGLADKE 809


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 392/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+  PK  +   +  TE Q +AI+
Sbjct: 361 SPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEILATSRAKRGLQVLR 736


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/756 (29%), Positives = 388/756 (51%), Gaps = 30/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG I ++ ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAI-IQGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  ++  R  +V  L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAINDQRPVRV-GLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
                  R T  E +        +  +  E + V++S  G+I+     S   S +     
Sbjct: 479 P------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++ IV
Sbjct: 533 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVV--- 654
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 593 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 652

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTW 711
            +  G  V  +      L F+++ +P    R  GVR  + K D  +  +      + L  
Sbjct: 653 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLAGDGDHLGL 712

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +   G     + +DL   +G R   G+LV     ++
Sbjct: 713 VTQRGAFKEMAVSDLE--VGARARRGNLVLHRLKKN 746


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/745 (29%), Positives = 393/745 (52%), Gaps = 28/745 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 239

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL-EDIRDESAEDVRIVLF 314
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  +  ++RDES  D   +  
Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  
Sbjct: 300 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILA 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI
Sbjct: 359 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+    
Sbjct: 419 VTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEG 548
               R +  E +         ++I +E   V ++  G+I+     S   S L     ++ 
Sbjct: 477 ----RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA 605
           D L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+  
Sbjct: 533 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 592

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTG 658
            V   +D       V+  G    VE  E         K   + K+  + +++  V  +  
Sbjct: 593 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKL 652

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           D V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R
Sbjct: 653 DDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--R 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
              +  +        R   G  V +
Sbjct: 711 GSLKRVSIEEILATSRAKRGLQVLR 735


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDN-YTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S + S L     ++ D
Sbjct: 475 GNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L     +  GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEK-MKLVVKVTGDH 660
           + D          + +G     E  E+        K   + K+  ++  +  V  V  + 
Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDCIVAVAPVVLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +N   L F+I+++P +  +  GV+  + KDG             +  +   G   
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVSAAFKSTTPSMYILTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
              ++D+   +  R   G  V +
Sbjct: 715 RMLQDDI--PVTSRAKRGLQVLR 735


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 220/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+ A 
Sbjct: 535 RLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K                  +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQAAFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIEEIPATSRAKRGLQVLR 736


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/749 (35%), Positives = 410/749 (54%), Gaps = 35/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P++ DG KPV RRI++AM +MGL  GA   KSAR+V
Sbjct: 32  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y++LVR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +
Sbjct: 92  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +D   VDF   Y+    EP + P++ P +L NG SGIAVG+AT IP HN+ E+
Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +AL+D+PE+    L++Y+ GPDFP GG I+     I+ +Y  G+G  RVRA+W VE
Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED------------------I 301
           ++ RG W  +VTE+P      +++ +I E    K     +                   +
Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331

Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES  +  VR+V  PK+   DPD  M  +   + +E    LN+ ++ +   P    L  
Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL EW+  RR  + RR + R+  +D+R+ IL+G +IA+++IDE+I +IR  D+PKP ++ 
Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 451

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LTE Q + IL +RLR L +LE ++++ EL  L  E+E +  +L++       I  EI
Sbjct: 452 AFGLTEIQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHVLDTPDALTRLIRDEI 511

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +      + +   G +R T  + +     T        EP+T+++S +GWIR+   H+V+
Sbjct: 512 Q------ADAAKYGDKRRTEIKAAERAVLT---QTTADEPVTLILSQKGWIRARVGHNVE 562

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           L  L FK+GD L   +   T    ++L  +G+AYT+    + +GRG G  +  L+DL   
Sbjct: 563 LETLSFKDGDGLAAVVETRTVWNAIVLDHNGRAYTIDPATVPTGRGDGVPVASLVDLQDG 622

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                        + +V  S G  FI +  ++    + GK F+ + + E +   VK+   
Sbjct: 623 AKPAQLISGRDEDRFVVAGSGGYGFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAA 682

Query: 660 -----HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                 +    ++ +LL F   ++ E+++G+G+ L +  DG     I            +
Sbjct: 683 PLEQLQLVAASDSDRLLAFPAAELKELAKGRGLMLMALDDGAALTAIGLVAGGKALLSTT 742

Query: 715 AGRS-YNRSENDLLGWLGKRGGVGSLVPK 742
           + R      +  L  + GKR   G L+PK
Sbjct: 743 SVRGKEAEEKLALEEFAGKRAKKGKLMPK 771


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/759 (34%), Positives = 424/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + +++V++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVIIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  ++ D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLAVRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 135/431 (31%), Gaps = 27/431 (6%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRF---PL 341
           IA   I + I +++  +       R+V       +  + +++  +  L+ +E       L
Sbjct: 386 IALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQANSVLDMKLQKLTALEIFKLEEEL 445

Query: 342 NMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           N+ + L       ++    I+         +  +    R   I    E+LK  +   +  
Sbjct: 446 NVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQK 505

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           + I+ ++  +   K +  + + L             + L   +          L      
Sbjct: 506 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIAIALCVNSHD 557

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
              ++++  + +   A EI++     +                        +   +   +
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSR--ASKGQNISELINLGAQEEILTIKNSKDFTDDSYL 615

Query: 521 TVVISNRGWIRSLKSH-----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
            +  ++    R   +      S  +  +   + D +  A      ++++ LS  G A+  
Sbjct: 616 LLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIF 675

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
            + ++       + +  +  L      V          LL++S  G    +  S+I    
Sbjct: 676 NSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSKISELK 734

Query: 636 RKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           R    +      +K     +  +     D + +V +  K L     ++ E  +  +G+++
Sbjct: 735 RGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQV 794

Query: 690 QSYKDGGISDV 700
               +  +  V
Sbjct: 795 LFLDNDSLISV 805


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/744 (29%), Positives = 394/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A  VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   SA   +  ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASAIDEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A T   +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFGQSAKTIQHLLMFTSLGNVIYPPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSVEEIPATSRAKRGLQVLR 736



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 27/146 (18%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              ++IS  G+        V         + A++ KE D L+     +T+   L L+  G
Sbjct: 654 DDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYL-LTQRG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----------------DIVTAFVYDSTCKL 614
               +    + +       +Q+L +L +                  D+ +  V ++   L
Sbjct: 713 SLKRVSVEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVSEQGFVGDLFSTEVEENDQTL 772

Query: 615 LVVSSKGNAFIVEESE--IIANTRKG 638
           LV S+KG  +     +  +   T  G
Sbjct: 773 LVQSNKGTIYENRLQDLNLSERTSNG 798


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 222/756 (29%), Positives = 387/756 (51%), Gaps = 30/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG I ++ ++ I ++Y  GRG   
Sbjct: 181 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAI-IQGKDGIKKAYETGRGRVV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 240 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  +   R  +V  L   L  +LA ++EV
Sbjct: 300 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRV-GLKHYLASYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 359 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 419 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
                  R T  E +        +  +  E + V++S  G+I+     S   S +     
Sbjct: 479 P------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++ IV
Sbjct: 533 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVV--- 654
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 593 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 652

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTW 711
            +  G  V  +      L F+++ +P    R  GVR  + K D  +  +      + L  
Sbjct: 653 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLAGDGDHLGL 712

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +   G     + +DL   +G R   G+LV     ++
Sbjct: 713 VTQRGAFKEMAVSDLE--VGARARRGNLVLHRLKKN 746


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/744 (29%), Positives = 391/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 538 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E         K   + K+  + +++  V  +  D
Sbjct: 598 VLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 658 DVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIEEILATSRAKRGLQVLR 739


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 401/754 (53%), Gaps = 26/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGI ++ +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGI-IQGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +   
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +R
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIVKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI+
Sbjct: 361 SQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K    
Sbjct: 421 TLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +            +I  E   V ++  G+I+     S   SAL     ++ D
Sbjct: 478 ---RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L  +  +  GE + Q L + + ++ ++   
Sbjct: 535 ELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFVQ 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVS-SEEKMKLVVKVTGDH 660
           + D      LLVV+  G    +E        T + K+  + K+   ++++ L+  V    
Sbjct: 595 IVDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFAD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ EN   L F++D +P +  R  GV+  + K+G    +         +W     R++
Sbjct: 655 LMLISENGYALRFNLDDVPVLGARAAGVKAMNLKNG--DKIKSAFFVNSNSWYLLTQRAF 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G  V +    +   + +
Sbjct: 713 IKRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 265/753 (35%), Positives = 407/753 (54%), Gaps = 42/753 (5%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L     + YL YA+S +K RA+P++ DG KPV RRI+  M  MGL F     KSARIV
Sbjct: 108 LTLARYASQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRSVKSARIV 167

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGDQSVYD+LVR+AQ F  RYPL+  +GNFG+ DGDSAAA RYTE R+T +
Sbjct: 168 GDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYTETRLTPI 227

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           ++L+L+ VD  +VDF+  Y+    EPV  P+K P +L NG+SGIAVGMAT IP HN+ E+
Sbjct: 228 SQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIPPHNLGEV 287

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A + L++NP+  + ++LE +  PDFP GG I+  ++ I   YR GRG  RVRARW  E
Sbjct: 288 AAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRVRARWHFE 347

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIA------------------ELIIAKRIPLLEDI 301
           ++ RG W +V+ E+P       ++++I                   +   +  + LL+++
Sbjct: 348 DLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAMLSLLDNV 407

Query: 302 RDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES +  DVR+V  PK   +D D  +  +   +D+E+  P+N+ +L +   P+   L  
Sbjct: 408 RDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDGKPRQKGLLE 467

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL++W+A R  V+ RRS  R++ +  R+ +L+G  +  LNID +IAIIRN D PK  ++ 
Sbjct: 468 ILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIRNADDPKADLIK 527

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F LT+ Q D IL +RL+ L +L    I+ EL  L  E+  ++ +L S      Q A EI
Sbjct: 528 EFGLTDRQADDILEIRLKQLARLAAIAIEKELAQLAKERAGLEKILGSDGALKRQTAKEI 587

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + F+       RRT   E  +A      +     EP+TVVIS +G++R+   H  D
Sbjct: 588 EAAAKSFADP-----RRTVVEEAEQAA----HEVQTADEPVTVVISRKGFLRARTGHGHD 638

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            S + FK GD L+  +   ++ +I  L   G+ YTL    L  GRG G  +   +DL   
Sbjct: 639 CSLMSFKTGDGLEATIECRSSSQISFLDQAGRVYTLAVSALPGGRGDGSPLSAFVDLPKG 698

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----- 654
                    D     ++V+S G   +++ S++    + G+ F+ +   E +   +     
Sbjct: 699 AQPAGWISADPNAAAVIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLPPIELPLK 758

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G+  +A +  + +LL+F + ++    S GKG+   + + G  S V    + E    +
Sbjct: 759 AAQGEQLIACLSSSNRLLVFPLKEVRVTASGGKGMSFMTLETGE-SLVSVALVDERGAIV 817

Query: 713 DSAGRSYNRSENDLLGWL-----GKRGGVGSLV 740
              GR     E  +   +       R   G ++
Sbjct: 818 TGTGRGGKAREAQISKRILGGATLHRARRGKVL 850


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 221/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q +     N++I+ A 
Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITSFETNEEILYAE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   ++        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K+  +              +    R 
Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSSFICNTSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736



 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 42/213 (19%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA---------------DKATLQ 511
           + +  + ++  +  +    F+ +     +R    E S                 +   + 
Sbjct: 587 NEEILYAEVVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIV 646

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRI 563
                K    ++IS  G+        V         + A++ KE D L+ +   +T+   
Sbjct: 647 AVAPIKLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSSFICNTSSFY 706

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----------------DIVTAFV 607
           L L+  G    +    + +       +Q+L +L +                  D+ +  V
Sbjct: 707 L-LTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGLIGDLFSTEV 765

Query: 608 YDSTCKLLVVSSKGNAF--IVEESEIIANTRKG 638
            ++   LLV S+KG  +   +++  +   T  G
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNG 798


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 398/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G      ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ ++ ++  + ++RDES  D   +   
Sbjct: 242 TDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+ + +  IL  ++AHRR+++  R
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDN-YTPRQVGIVPILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  +RR+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  NL  +   + +++   +  +N +  E+REVK++F      
Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S + S L     ++ D
Sbjct: 475 GNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +LL +  G A   P   L     +  GE + Q L +    ++I+ A 
Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGDH 660
           V D          + +G     E  E+        K   + K+   E+++  V  V  + 
Sbjct: 595 VVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKIKDQEDRIVAVAPVVFED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +N   L F+I+++P +  +  GV+  + KDG             +  +   G   
Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDGDQVAATFKSTTPSMYILTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
              ++D+   +  R   G  V +
Sbjct: 715 RMLQDDI--PVTSRAKRGLQVLR 735


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 221/744 (29%), Positives = 393/744 (52%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++   F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYFFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +T G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++ +N   L F+I+++P +  +  GV+  + K                  +    R 
Sbjct: 655 DVVLISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQAAFICNMSSFYLLTQ--RG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/838 (30%), Positives = 405/838 (48%), Gaps = 111/838 (13%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV +VS+   LE+ YL+YA+S I  RAIPD+RDG KPVHRRI+++M + G D+G  +KK+
Sbjct: 6   NVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YDSLVR+AQ F    PLI  QGNFG+IDGD  A+ RYTEAR
Sbjct: 66  ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + A  +L  +DED VDFR  Y+E + EPVV P++FPN+L NG  G+AVGM+T+IPSHN
Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A +A IDNPEI+ ++L+  + GPDFPTGG I+     I  ++  G+G   V+ +
Sbjct: 186 LGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I++ EIPYQV K++LIE+I EL+  K+I  + D+RDES +    V   
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             + +   +++  I  L+ + T F +N  VL   + P+VM L  I+  ++ +RREVL RR
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTTFSINTLVLENNK-PKVMSLLDIISTFVEYRREVLTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + FR++ +  +  +  G+ IA LNID++I+IIR+                          
Sbjct: 364 TQFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMI 423

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT  QV +IL ++L+ L  LE+ +++ +L ++++   +   LL 
Sbjct: 424 ELVADTKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLK 483

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +     I   + +VK   +       RRTT      +   T  + +I KE + V ++ 
Sbjct: 484 NKEALLKLIKDGLIDVKTKLAVP-----RRTTI---DYSHFETDVEDLIPKEDMVVTVTM 535

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +           KE D +      +T   +L  S  G+ Y L   
Sbjct: 536 SGYIKRAKLSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVY 595

Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESE 630
            L  G     G ++  +  L+ N+ I +               ++  ++ GN      ++
Sbjct: 596 KLPLGEPTSRGRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALAD 655

Query: 631 IIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---G 686
                  GK  + +   + +  V V    DHV +     K + FS+  + +  +G+   G
Sbjct: 656 FQYVPSNGKIAMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQF-KGRMSDG 714

Query: 687 VRLQSY------------------------------------KDGGISDVICFKICEGLT 710
           VR                                        K+ G       KI   L 
Sbjct: 715 VRAIKLSSQDNVISMSILLAMDIGSEKKDLYLKVPLDKRIAVKEEGFIGTGIVKILADLG 774

Query: 711 W---------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                           +      + +  +        RGGVG +      R+G  ++S
Sbjct: 775 LDQDTFMTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRNGNVVAS 832



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----S 645
           +++L DL  +QD     +  +   +L V+  G        E     R G   + +     
Sbjct: 767 VKILADLGLDQD-TFMTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTR 825

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICF 703
           +   +      + DH+ ++ +  KL+  ++  I  + R  +GV L ++ K   +  V   
Sbjct: 826 NGNVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKI 885

Query: 704 KICEGLTWID 713
              +  + ID
Sbjct: 886 IDAKDDSEID 895


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/756 (29%), Positives = 387/756 (51%), Gaps = 30/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 4   VADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 64  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 124 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG I ++ ++ I ++Y  GRG   
Sbjct: 184 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAI-IQGKDGIKKAYETGRGRVV 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 243 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  +   R  +V  L   L  +LA ++EV
Sbjct: 303 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRV-GLKHYLASYLAFQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 362 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 422 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
                  R T  E +        +  +  E + V++S  G+I+     S   S +     
Sbjct: 482 P------RRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSIRSFKASEVGDNGL 535

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++ IV
Sbjct: 536 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 595

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVV--- 654
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 596 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 655

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTW 711
            +  G  V  +      L F+++ +P    R  GVR  + K D  +  +      + L  
Sbjct: 656 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLAGDGDHLGL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +   G     + +DL   +G R   G+LV     ++
Sbjct: 716 VTQRGAFKEMAVSDLE--VGARARRGNLVLHRLKKN 749


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/793 (30%), Positives = 403/793 (50%), Gaps = 64/793 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L+   V A  L   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MARQLNLLSGQVIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +  E +L  V E  VDF   ++    EP V P++ P LL NG+SGIA
Sbjct: 121 PAAMRYTETRLASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  +ALIDN ++S E+L   I  PDFPTGG IV S + I E+Y 
Sbjct: 181 VGMATNVPPHNLGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIV-STDGIAEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK A L+ A R+  + 
Sbjct: 240 QGRGSIVMRGVAKIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  D   V+    R   P +++  ++  +D+ ++F      L   + P+ + L  
Sbjct: 300 DIRDESDRDGIRVVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDSQ-PRQLTLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           IL+E+L  R + L R+ +  ++A  RR  I++GLL A  N+D +I I+RN       K  
Sbjct: 359 ILQEFLNFREQTLIRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAKIS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + S   ++E Q DAIL + +R L  LE  +++ E + L  +  ++  L++   +    + 
Sbjct: 419 LESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRRLIDDRSELMKSLK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADK---------------------ATLQQAMI 515
            E+R +K  +        RRT         +                     A LQ    
Sbjct: 479 KELRSLKRQYGDP-----RRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTTAILQPVAP 533

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKE---------GDSLKIALHAHTTDRILLL 566
            +E   +  ++RG++R L + + D  +    +          D    +   +T   + ++
Sbjct: 534 AEEETFLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTNTGQNLAII 593

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLI--------DLNHNQDIVTAFV---YDSTCK 613
           +  GKAY L  G++   S R  G  +  L+         ++  + I+  F+   +     
Sbjct: 594 TRTGKAYPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFIVAQHSDKTD 653

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLI 672
           L++V+ +G    +  +E++  T +G T +K+  ++++        G+ + +     ++L 
Sbjct: 654 LILVTQQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQMILATSGGRVLR 713

Query: 673 FSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
             ++   +P M R  +G ++   +      V C  +    + +  +   + +  +     
Sbjct: 714 LPVNDEQLPPMGRTAQGSQVTRLRK-QERLVSCLTVPPKASLLLVSELGFAKRISLDRVR 772

Query: 730 LGKRGGVGSLVPK 742
              RG +G+ + +
Sbjct: 773 STTRGAIGTQLFQ 785


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/762 (35%), Positives = 410/762 (53%), Gaps = 57/762 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
           V+ + L     ERYL +ALS I  RA+PD+RDG KPV RRI++AM + + L   A ++KS
Sbjct: 4   VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A IVGEV+GK HPHGD ++Y+++VR+AQ F  RYPL+ G GNFG+IDGD+AAA RYTEAR
Sbjct: 64  ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+ +    V  R  ++    EPVV P++FPNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +A + LID P   +E +LE +I GPDFPTGG ++ +RE ++E YR G G   +R 
Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +E    G   IV+T IPY + K+ L+EKIAE I A ++P L D+RDES ++VRIVL 
Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDEVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG-----ILKEWLAHRR 369
              R  DP+  M  +F  + ++TRF +N+  L     P+V          +L+ +L  R 
Sbjct: 300 L-RRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
           EV+ RR  + ++ ++RR+ IL+G    +  +DE I IIR           ++ RF L + 
Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHRFQLDDV 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L +LE   I+ EL+    +  ++ +LL     +W  I  E++ +K+ F
Sbjct: 419 QADAILETKLYKLSRLEIEAIRQELEEKERQAAELRALLADEAARWGLIREELKAIKKQF 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + +      R T            Q+A I  E + V+++  GW++  +S++ D+ ++  +
Sbjct: 479 ADA------RRTVIAGPDEGFEYNQEAYIVDEDVYVIVTRDGWVKRQRSYT-DVQSIRVR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGD++   L   T   +   +  G+ YT    +L S  G+G+ +Q L D +  + +V   
Sbjct: 532 EGDTVGWVLPGSTRATVGFFTNYGRCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVV 591

Query: 607 VYDSTC-------------------------KLLVVSSKGNAFIVEESEI-IANTRKGKT 640
           V+D                             ++ V+ KG    +        +T+ G+ 
Sbjct: 592 VFDERALPRPVPEPEVEPALFENGEQEAPRVHVVAVTRKGQTLRIPIDGFREPSTKNGRL 651

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGGIS 698
           F+++   +++  V    GD  V +      +LIF + QIP   S  KGV       G   
Sbjct: 652 FMRLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIPPVKSAAKGVIAMRL--GRGD 709

Query: 699 DVICFKIC----EGLTWIDSAGRS-YNRSENDLLGWLGKRGG 735
           +V+ F +     EGL    S GR    R+    +   G RG 
Sbjct: 710 EVLGFTLASAAREGLEVETSRGRREIVRTTKFEVSRRGNRGR 751


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/757 (29%), Positives = 408/757 (53%), Gaps = 25/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++Y+ GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGI-IQGLDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  ++ H+ EV+
Sbjct: 300 AIELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISDG-RPKLMGIKQIIDSYINHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 ANRTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E D L    + +  +L+      N I  E+ E+++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELTEIRKKFKTD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL   L  +T D  L+ +  G+   +P   L   R    G+ +  ++ ++ ++ ++ 
Sbjct: 533 DGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 592

Query: 605 AFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKG-KTFLKVSSEEKMKLVVKVTGD 659
            F            ++ +  G        +            +KV  ++++  +++V  D
Sbjct: 593 VFNEKDFNQREAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKVKEQDEVINIMRVESD 652

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  VV      L +S +++ +   R  GV+  + KD     V+   I    + + +  R
Sbjct: 653 QLITVVTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFV-VMTQMINHSESVMMATQR 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +     +    KR   G  + K   ++  + +++
Sbjct: 712 GAIKHIGFKVLQEAKRAQRGITLLKELKKAPHRIVAA 748


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/756 (29%), Positives = 387/756 (51%), Gaps = 30/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 4   VADTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 63

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 64  FRKSAKAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 123

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A  +L+ +D+D V+    +++ + EPVV P++ PNL  NG +GI+ G AT I
Sbjct: 124 TEARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L+ +P  S++ L++++ GPDFPTG I ++ ++ I ++Y  GRG   
Sbjct: 184 PTHNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAI-IQGKDGIKKAYETGRGRVV 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   IVVTEIPY+V K++L+++I +L + K++  + D RDE+      
Sbjct: 243 VRAKTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLR 302

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R +D   ++  +   +D++  +  NM  +   R  +V  L   L  +LA ++EV
Sbjct: 303 IAIELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRV-GLKHYLASYLAFQKEV 361

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F ++    R+ I++GL+ A   +D++IA IR   N    +  +V+ +  T  Q 
Sbjct: 362 ITRRTRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVAAYDFTPTQA 421

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L    E    +L   K     +  E++ +K+ F+ 
Sbjct: 422 EAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEKTLDRVLKREMQAIKKEFAN 481

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
                  R T  E +        +  +  E + V++S  G+I+     S   S +     
Sbjct: 482 P------RRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKRSSIRSFKASEVGDNGL 535

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +     T   + + +  G+    P   L   R    GE +   IDL+ ++ IV
Sbjct: 536 REDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIV 595

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVV--- 654
            A + D        +  +S G       S+    +R        +K+    ++  V    
Sbjct: 596 KAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFE 655

Query: 655 -KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTW 711
            +  G  V  +      L F+++ +P    R  GVR  + K D  +  +      + L  
Sbjct: 656 PEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGISLAGDGDHLGL 715

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           +   G     + +DL   +G R   G+LV     ++
Sbjct: 716 VTQRGAFKEMAVSDLE--VGARARRGNLVLHRLKKN 749


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/733 (36%), Positives = 414/733 (56%), Gaps = 20/733 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL    E+ YL YA+  I +RA+P L DG KPV RR+++AMSE+GL  G+ +KKSAR VG
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYPLI GQGN+G+  D  S AA RYTE+++T  
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  ++ + VD+   ++    EP   P++ PN+L NG SGIAVGM+T IP HN+ EI
Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A  AL+ NP++S E LL+ +  PDFPTGG+++ +RE I   YR G G  R+RA + +E
Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKN 317
                   IV+ E+PYQV  S++ E+I + I  K++  LE +RDES      R+VL P++
Sbjct: 248 -----KDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +D   LM+ +F  +D+E    + +N++ +   PQ+ PL  IL+EWL +R + + RR S
Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +R+ A++ R+EIL GL IA+L +D +I IIR  D  +  ++    LT  Q +AILN+RLR
Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L KLEE  I  E   L+ E++ + +L+++   +   IA E+    + ++       RRT
Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADP-----RRT 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           TF +      A   +A    E +T+V+S   W+R  K+H VD   L +K GD   + + A
Sbjct: 478 TFIKPDAK-TALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAA 536

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +    +L   DG+ Y L   N+ S RG+GE +           IV A   D     ++ 
Sbjct: 537 KSDQTAILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLA 596

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSID 676
           ++    F+V+ S+++A T+KGK  L V     + L+     + +    +N  + LIF   
Sbjct: 597 ANNAYGFVVKGSDLVAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPAR 656

Query: 677 QIPEMSRGKGVRLQSY--KD---GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +P+ S+GKG ++ +   K+   G     +     +    + S  RS   +  +   + G
Sbjct: 657 DLPQQSKGKGNKIMAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCG 716

Query: 732 KRGGVGSLVPKGF 744
            RG  G  +P+ F
Sbjct: 717 ARGQKGVYLPQPF 729


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + +G T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVNGLLVLADGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I Q + +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 390/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQV-GLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  +L  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDERTMFNVMKRELRDIKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S +     ++ D
Sbjct: 475 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASTIDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + +L+ +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNLSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDH 660
           + D       L  +  G     E  E     T K K+    K+    + +  V  +  D 
Sbjct: 595 ILDDFEAGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDASDCIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 655 VMIITQKGYALRFNADEVPVVGAKATGVKAINLKDDDTVQAVFVANTQSFYLLTQRASLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+     KR G G  V +
Sbjct: 715 RVATADI--PQAKRAGRGLQVLR 735



 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 92/278 (33%), Gaps = 52/278 (18%)

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +        +  NQ + I     R + +L + + K   ++L      +       +  + 
Sbjct: 541 QAKTTQHLLMFTNQANVIY----RPIHELPDIRWKDLGEHLSQTITNLSK---DEEVLYA 593

Query: 474 QIACEIRE---------------VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +I  +                   ++ F+       +   + ++  A    +    I+ +
Sbjct: 594 EILDDFEAGTYLAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKDASDCIVTVTPIQLD 653

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
            + + I+ +G+     +  V         + A++ K+ D+++    A+T     LL+   
Sbjct: 654 DVMI-ITQKGYALRFNADEVPVVGAKATGVKAINLKDDDTVQAVFVANT-QSFYLLTQRA 711

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNH------------------NQDIVTAFVYDSTC 612
               +   ++   +  G  +Q+L +L                      D++     ++  
Sbjct: 712 SLKRVATADIPQAKRAGRGLQVLRELKTKPHRVFTAGPVFTENSGGEIDLLATLAEEAPQ 771

Query: 613 KLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
            LLV ++ G    V+ S   +   T  G     ++ +E
Sbjct: 772 TLLVTATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 809


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 402/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 401/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y ++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/749 (31%), Positives = 405/749 (54%), Gaps = 30/749 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  AF
Sbjct: 3   TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++Q+A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E  EAA+ LI++P  S++ L+++I GPDFPTGGI ++  + I ++Y  GRG   +
Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGI-LQGIDGIKKAYETGRGRAVL 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++      I+VTEIPY+V KS L+++I  L I K++  + ++RDES  +   V
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    ++ +   ++  +F  +D++  +  NM  ++  R   V  L  IL+ +L H+REV 
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHV-GLKTILEAYLEHQREVT 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ F ++    R  I+KGL+ A   +D++I  IR   N+   K  +VS FS TE Q +
Sbjct: 361 TRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E + L       +++L + K+    I  E+  + + +   
Sbjct: 421 AIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFK 546
              G  R T  +   +      + M+ +E + +++S+ G+++     S + S       K
Sbjct: 478 ---GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           + D   +    +T   + + +  G     P   ++  R    GE +   + L +++ I+ 
Sbjct: 535 DEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYILN 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSE-EKMKLVVKV 656
           AFV+   D   K L+ + +G    V+ +++       TR  + ++K+ ++ +++  V +V
Sbjct: 595 AFVFENIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASR-YIKLKTDVDEVISVSQV 653

Query: 657 TGD--HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
             D   V         L +S+D++P       GV+    +D  +++VI     + ++ I 
Sbjct: 654 ESDKSQVFCASYTGYGLKYSLDEVPTNGVLAAGVKCMDLRDDTLANVILVSESDEVSIIT 713

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             G        D+   L  R   G  + +
Sbjct: 714 QRGSYKKMKVADV--PLTTRARRGVQILR 740


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/758 (36%), Positives = 425/758 (56%), Gaps = 35/758 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + N+N   EEN  AV +    EE YLAYA+S +K RA+P + DG KPV RRI++A
Sbjct: 1   MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYA 55

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+
Sbjct: 56  MKEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG 
Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT I  HN++EI  A L ++DNP  +    ++++ GPDFP GG ++     I+
Sbjct: 176 SGIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADIL 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------ 288
            +Y  GRG  R+RARW VE + RG W I++ E+P+ V    + ++I              
Sbjct: 236 STYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKT 295

Query: 289 ------LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                 LI    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+N
Sbjct: 296 IDQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M ++     P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE
Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I +IRN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + 
Sbjct: 416 VIKVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L S  +     A EI++  E +      G  R T  E     +   Q+A +  EP+T+
Sbjct: 476 TILGSDTKLRRLTAKEIKQDAEKY------GDDRRTLIEPVERVQGG-QKAFVVDEPVTI 528

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++S  GWIR+ + H V+  A+ +K GDS    +   TT  I+LL ++G+ Y   A  +  
Sbjct: 529 LLSKNGWIRARQGHGVERDAISWKAGDSEFAVIETRTTLPIVLLDSNGRCYAFDASTVPG 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G+G G  +  +I++ +   +V A       + L  +S    FI     ++A  + GK F+
Sbjct: 589 GKGDGIPLSSIIEVQNGAKLVHALSGKDDDRYLFATSNSYGFIAPLKGLVARPKAGKAFM 648

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDV 700
           K   +  +   + +    H+ V     KLL+F++ ++ E  + GKGVR+    D   + +
Sbjct: 649 KPEGKATILPPLALDDRTHLVVTSSENKLLVFAVTEMNEYPNGGKGVRIMDIPDN--ASL 706

Query: 701 ICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVG 737
              ++  GL+  I   G++     + L  ++ KR   G
Sbjct: 707 SRLELSNGLSANILVKGKAKVIEGDVLSKFIQKRARKG 744


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/754 (29%), Positives = 402/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+I  IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/627 (35%), Positives = 351/627 (55%), Gaps = 31/627 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+++M E+        +K
Sbjct: 7   DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+ +GK HPHGD S+Y +LV +AQ +  RYPL+ G GNFG++DGD AAA RYTEA
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +   +++D VDF   ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H
Sbjct: 127 RLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           N++E+  A + +ID+      E SIE +L+ + GPDFPTG +I+ +R  I E+YR GRG 
Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            RVRA   +E +  G   IVVTE+PY V K+RLIEKIAEL+  K+I  + D+ D+S  + 
Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R ++ ++++  ++  + ++  F + M  L     P+VM +  +L  +L H+ 
Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNE-PKVMNILEMLNYYLRHQE 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ + +   + R  IL+GLLIA  NIDE+I IIRN       K  ++  F LT+ 
Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AI+++RLR+L  LE  ++++E   L+    ++ ++L   K     I  EI  +   +
Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIKEEILVISGKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT+       +     + +I ++ + + ++  G+I+               
Sbjct: 485 GD-----DRRTSIG---FDELDLSTEDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596
            +  +   E D ++      T + I+  +  G+ Y +    +        G AI  L+ L
Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSK 620
             ++ I        Y+    L + + K
Sbjct: 597 MPDEKITAMIPIREYEDGKYLFMATKK 623



 Score = 44.4 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           ++ ++  G    +      +  R GK       +  +   +L +  T +++       ++
Sbjct: 511 VITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRV 570

Query: 671 LIFSIDQIPEMSR-GKGVRLQSY----KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                 +IPE  R  +G  + +      D  I+ +I  +  E   ++  A +  +  E D
Sbjct: 571 YRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYEDGKYLFMATKKRS-CEED 629

Query: 726 LLGWLGK 732
               L K
Sbjct: 630 ANYRLCK 636


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 214/754 (28%), Positives = 401/754 (53%), Gaps = 26/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGI ++ +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGI-IQGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +   
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +R
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIVKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI+
Sbjct: 361 SQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K    
Sbjct: 421 TLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +            +I  E   V ++  G+I+     S   SAL     ++ D
Sbjct: 478 ---RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L  +  +  GE + Q L + + ++ ++   
Sbjct: 535 ELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSADEKVIFVQ 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVS-SEEKMKLVVKVTGDH 660
           + D      LLVV+  G    +E        T + K+  + K+   ++++ L+  V    
Sbjct: 595 IVDEFAGENLLVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGEDDEIVLITPVQFAD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ EN   L F++D +P +  R  GV+  + K+G    +         +W     R++
Sbjct: 655 LMLISENGYALRFNLDDVPVLGARAAGVKAMNLKNG--DKIKSAFFVNSNSWYLLTQRAF 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G  V +    +   + +
Sbjct: 713 IKRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 380/743 (51%), Gaps = 26/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R+ LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ + +  V+F   ++++D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAIAGEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +D P  ++++L+  + GPDFPTGGI ++  + I ++Y  GRG   VRA
Sbjct: 185 ALDEVLDAVLMRLDKPTATVDELMTVLKGPDFPTGGI-IQGVDGIKKAYETGRGKIIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE +  G   IVVTE+PY V K+ L++KI E  + KR+  + +IRDES      V+ 
Sbjct: 244 QAVVEPIKGGKEQIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    +++ +F  +D++  +  NM  +     P +M L  +L  ++ H++EV+  
Sbjct: 304 ELKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNR-RPTMMTLPLLLDAYITHQKEVVTN 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           RS + +Q    R  I+ GL+ A   +DE+IA IR+ +  K       ++F  TE Q +AI
Sbjct: 363 RSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAKFDFTEVQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  +++ E D+L     K++ +L S  +    I  E+ ++K+ F++   
Sbjct: 423 VSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQSEAKLVRVIKQELLDIKKRFTEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R +  E    +       ++  E + V ++  G+I+   + S    +      K+ 
Sbjct: 481 ----RRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAASNGQDFAMKDS 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L    + +T   +LL +  G     P   L     +  G+ I  ++  + ++ I+  +
Sbjct: 537 DYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRWKDLGQHISSIVPTSEDESIIAVY 596

Query: 607 VYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD- 659
            ++        +L  +  G       ++  A TR  K    + V + + M     +T D 
Sbjct: 597 GFETFEQPNTYILTATKDGQIKRSPLADY-AVTRYSKPIKTMNVKAGDAMIYASFMTDDV 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGR 717
            + +  +    + F I+++P    +  GV+  + KDG  +  V   +  E    +    R
Sbjct: 656 ELLLTTDTAYAIRFPIEELPVTGVKTGGVKGITLKDGEALVGVNVLQPDETQYVVIVTQR 715

Query: 718 SYNRSENDLLGWLGKRGGVGSLV 740
              +  N     +  R   G  V
Sbjct: 716 GAVKKMNVAEVEVAGRAKRGLKV 738


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 390/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 12  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 72  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 131

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+D V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 132 LSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 191

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPD PTG I ++  + I ++Y  G+G   VR+R
Sbjct: 192 LAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGAI-IQGADEIRKAYETGKGRIVVRSR 250

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY V K+ L++KI ++ I  ++P + ++RDES  +   +   
Sbjct: 251 TEIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAIE 310

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  +  IL  ++AHRR+++  R
Sbjct: 311 LKKDADSQAILNYLLKYTDLQINYNFNMVAIDNFTPRQV-GIVPILTSYIAHRRDIIVAR 369

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR+ +     K  +   +  TE Q +AI+
Sbjct: 370 SKFDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENLKVSYDFTEEQAEAIV 429

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  E   + +++   +  +N +  E+REVK+ F      
Sbjct: 430 TLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGDERTMFNLMKRELREVKKKF------ 483

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+++     S + S    L  ++ D
Sbjct: 484 GNPRRSELQAQAQAIEIDTASLIVEEDTYVSLTRSGYLKRTSPRSYNASTPEELGKRDDD 543

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
              +   A TT  +L+ +  G     P   L     +  GE + Q L +   +++++ A 
Sbjct: 544 KAVLIAPAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLTNFATDEEVLYAE 603

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + D         V+  G    V+ +E        T+  K       E+++  +  +  D 
Sbjct: 604 IIDDFTPETYFAVTKMGQIKRVDRTEFQPWRSYKTKSSKYAKLKGDEDQVVAMAPIKLDA 663

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V V+ E    L F I+++P +  +  GV+  + KDG           +    +   G   
Sbjct: 664 VMVITEKGYALHFPIEEVPVVGSKAAGVKAINLKDGDSVKAAFIANTKSFFILTQRGSLK 723

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             + +D+   L KR G G  V +
Sbjct: 724 RMALDDI--PLAKRAGRGLQVLR 744


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 404/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD+S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 750


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/759 (33%), Positives = 423/759 (55%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++AE I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   S+  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++ +EE       ++VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 AKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I +I   +     K  +V+ F L+E Q ++
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLVANFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L+++L+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+T      +     LL+ ++ G     E ++      +G   +K++ ++ +     V 
Sbjct: 599 EILTIKNSKDFTDDACLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVF 658

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  V  + +     IF+   +   +RG  GV     K+G +  V    + E    +  +
Sbjct: 659 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDL-FVKVLALRENPYLLIIS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
              Y +  +       KRG  G    K    ++G  + +
Sbjct: 718 ENGYGKRLSVSKISELKRGATGYTSYKKSDKKAGSVVDA 756



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/433 (12%), Positives = 139/433 (32%), Gaps = 30/433 (6%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +  I E+I   ++  L     E        L     +   D+ ++ +  L   +    LN
Sbjct: 388 LNNIDEVIKVIKLSKLSKDAKE-RLVANFGLSEIQANSVLDMKLQKLTALEIFKLEEELN 446

Query: 343 MNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           + + L       ++    I+         +  +    R   I    E+LK  +   +  +
Sbjct: 447 VLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKE 506

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            I+ ++  +   K +  + + L             + L   +       +  L       
Sbjct: 507 NIVVMLTKKGFLKRLSQNEYKLQGTGG--------KGLSSFDLNDGDEIVIALCVNTHDY 558

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEP 519
             ++++  + +   A EI++           G+  +    +   ++    +   +   + 
Sbjct: 559 LFMISNEGKLYLINAYEIKDSSR-----ASKGQNISELINLGAQEEILTIKNSKDFTDDA 613

Query: 520 ITVVISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
             ++ +  G I   +S       S  +  +   + D +  A      ++++ LS  G A+
Sbjct: 614 CLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAF 673

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
              + ++       + +  +  L      V          LL++S  G    +  S+I  
Sbjct: 674 IFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLALRENPYLLIISENGYGKRLSVSKISE 732

Query: 634 NTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
             R    +      +K     +  +     D + +V +  K L     ++ E  +  +GV
Sbjct: 733 LKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGV 792

Query: 688 RLQSYKDGGISDV 700
           ++    +  +  V
Sbjct: 793 QVLFLDNDNLISV 805


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 217/740 (29%), Positives = 389/740 (52%), Gaps = 27/740 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F 
Sbjct: 300 ANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L
Sbjct: 359 KEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R
Sbjct: 419 YRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------R 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKI 553
            +  E +         ++I +E   V ++  G+I+     S   S L     ++ D L  
Sbjct: 473 LSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV--- 607
              A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   
Sbjct: 533 VQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQ 592

Query: 608 YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAV 663
           +D       V+  G    VE  E         K   + K+  + +++  V  +  D V +
Sbjct: 593 FDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVL 652

Query: 664 VGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           V +N   L F+I+++P +  +  GV+  + K+  +              +    R   + 
Sbjct: 653 VSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKR 710

Query: 723 ENDLLGWLGKRGGVGSLVPK 742
            +        R   G  V +
Sbjct: 711 VSIEEILATSRAKRGLQVLR 730


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/753 (29%), Positives = 402/753 (53%), Gaps = 29/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 65  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 597 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 657 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
              R   +           R   G  V +   +
Sbjct: 717 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKK 749


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/765 (32%), Positives = 416/765 (54%), Gaps = 35/765 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ +        L+  YL Y+LS I  RAIPD+RDG KPV RRI+++MSE+GL   ++F
Sbjct: 1   MDDKIFIKDFTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVGEV+GK HPHGD ++YD+LVR+ QPF  RYPL+  QGNFG+IDGD  AA RYT
Sbjct: 61  KKNARIVGEVMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM ++ E +L+ ++++ VDFR+ ++   SEPVV P+  PNLL NG SGIAVGM T+IP
Sbjct: 121 EARMPELGEYMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   LI+ PE  +  LL++I GPDFPTGG +V+  E + E Y  GRG   +
Sbjct: 181 PHNLNELVAALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDG-EGLKELYETGRGKITI 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----IAKRIPLLEDIRDESAED 308
           R ++ +E+ G+G+  IV  EIPY V K+ +IE+I   +      K+   ++D+RDES ++
Sbjct: 240 RGKYRIEDEGKGT-SIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKE 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    ++ +   L+  +F  +++++ F + MNV+   +   +M L G+L+ +L HR
Sbjct: 299 GIRLVIELRKNANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPS-LMNLKGLLQSFLDHR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTE 425
             V+ RR+ + ++   +R  I++GL+ A   ID ++ IIRN + P+     +     ++E
Sbjct: 358 VNVITRRTKYELEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQETIGVSE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI ++RL SL KLE   +  EL NL  + E    +L   ++    I  E+ EV   
Sbjct: 418 EQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAMDILQKKERLLGVIKEELDEVANK 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F      G +R T    ++ D A   + MI+ E + +V++  G+++++ S    +     
Sbjct: 478 F------GDKRRTEILYNKGDLAEEVE-MIQDEDVVIVLTKWGYLKAIPSSEYKVQGRGG 530

Query: 546 K--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
           K        + D +K  ++ +   +++L S+ GKAY + A  + +      G+ I   I 
Sbjct: 531 KGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIETTLKNTKGKHIANFIS 590

Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L+  ++I +        D    +L+ + +G        E  +    G   + +  ++ + 
Sbjct: 591 LDEGEEIKSIVAISLDGDYDKDILIFTKQGKVKRTSLREFSSARASGIRAINLVDKDVVV 650

Query: 652 LVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
            VV + G    + +V +    L+F+  Q+  M R   GV     ++G    +   K+ EG
Sbjct: 651 DVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTMGRTAMGVNSIKLREGD-EVINVVKVDEG 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +    R Y +  +        RGG+G    +   R G  +++
Sbjct: 710 KKLLLITERGYGKRVSFHSYKPQNRGGIGVKTVRDISRIGPIVAT 754



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
              I L    +++     D   KLL+++ +G    V         R G     V    ++
Sbjct: 689 VNSIKLREGDEVINVVKVDEGKKLLLITERGYGKRVSFHSYKPQNRGGIGVKTVRDISRI 748

Query: 651 KLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
             +V       G  + +  +  K +  +++ I  + R  +GV +    +  
Sbjct: 749 GPIVATMSVEDGRDILIFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDD 799


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/761 (31%), Positives = 410/761 (53%), Gaps = 32/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +
Sbjct: 72  QDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHR 131

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTE
Sbjct: 132 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTE 191

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 192 ARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 251

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL  NPEISI +++E++ GPDFPTG +I+   + I E+Y  G+G   VR
Sbjct: 252 HNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIM-GTKGIKEAYETGKGSISVR 310

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +   ++
Sbjct: 311 SIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRII 370

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +   P++++  ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ 
Sbjct: 371 IDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVT 429

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F +   + R+ IL+GL IA  NIDE+I II++       +  + +RF L+E Q  A
Sbjct: 430 RRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSARFDLSEKQTKA 489

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L    +  E+ NL AE E+I ++L +     + I  E+ E+K  ++   
Sbjct: 490 IVDMRLGRLTGLAVDGMIEEMQNLAAEIERITNILANRDLLIDLIIDELTEIKNKYADE- 548

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                R T  +      +   + +I K  I +  S +G+++          +   V ++ 
Sbjct: 549 -----RRTVID-KNISASINDEDLISKRDIVITTSTKGYVKRIDLEEYKTQRRGGVGITT 602

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID---LN 597
           +     D +   +   T   +L+ +  G+ Y + A  +     +  G +   +I    ++
Sbjct: 603 MKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVD 662

Query: 598 HNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +++    D       L   +  G       SE       GK    +  E+++    
Sbjct: 663 EGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKEEDELIRAS 722

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +  D  + +    ++++ F  ++   +SR   GV+  +  +   + +      EG   +
Sbjct: 723 IIDDDELILLANSKQRIVKFHSNEFRALSRIATGVKGITLAEDE-TCISASSSSEGELIL 781

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +  +  L  L  RGG G +      ++G  + +
Sbjct: 782 TIGKNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 11/259 (4%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +  + +   A EI E+      ++ +        +      + L       +      + 
Sbjct: 628 NHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATK 687

Query: 527 RGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            G I+                A + KE D L  A      + ILL ++  +     +   
Sbjct: 688 LGIIKKTSLSEFQIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEF 747

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +       ++  I L  ++  ++A        +L +   G   I   S      R GK 
Sbjct: 748 RALSRIATGVKG-ITLAEDETCISASSSSEGELILTIGKNGFGKITHHSLFRLVHRGGKG 806

Query: 641 FLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
            + ++S++   LV        D + ++  +   +   I  I E  R  KGV+L + K   
Sbjct: 807 VIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKE 866

Query: 697 ISDVICFKICEGLTWIDSA 715
               +     E  + +D  
Sbjct: 867 QIQAVEIVKLESDSTLDET 885


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 RPGLDVFLVTYQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/754 (29%), Positives = 403/754 (53%), Gaps = 29/754 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 6   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  ++++ VD    +++ + EP V P+++PNLL NG++GI+ G AT IP+H
Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + +ID+P+ S+EKL+EYI GPDFPTGGI ++ ++ I ++Y  GRG   +R+
Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGI-LQGKDEIKKAYETGRGKVILRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      IV+TEIPY+V K+ L++K+ E+ + K+I  + ++RDES      ++ 
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +   ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR++V+ +
Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQV-GLKDILRSYIEHRKQVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           RS F +    +R  I++GL+ A   +DE+IA IR        K  +V  F  TE Q +AI
Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E ++L+A+  +++ +L++ K+ ++ +  E+REVK+ +S +  
Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEG 548
               R T  E    +     Q ++ +E + V ++  G+++     S   S    +  +EG
Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI-DLNHNQDIVTA 605
           D L  +    T D +LL++        P   L     +  GE I   I +L+ ++ I+  
Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           F Y    +    + +S  G       +E     T K +    +K+ +EE   + V +  D
Sbjct: 598 FPYQKIQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKED 657

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WID 713
                V +V      L + +  +P +  +  GV+  + KDG         + EG T  + 
Sbjct: 658 QPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIINGLLVLAEGDTPIVI 717

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              R   +           R   G  V +   ++
Sbjct: 718 VTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKN 751


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 247/825 (29%), Positives = 383/825 (46%), Gaps = 103/825 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +S+   L+E YL YA+S I  RA+PD+RDG KP  RRI+ AM+++ L  G+   K A+I 
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+  G  HPHG+  +Y +LVR+AQ +  RY L+  QGNFG+I G   AA RYTEARM+  
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+++L+ +  D VD+  TY+E ++EP V PSK+PNLL NG+ GIAVGMATSIP HN+ E+
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C A + +I+ P + IE+LL+ I GPDFPTGGII   R  +   Y  GR    VR+   ++
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIIC-GRSGVRRGYLTGRSTILVRSHTTID 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
            V +G   IV+ +IPYQ  + R+ E+IA      RI  +  +R+ES   E VR+VL  K 
Sbjct: 240 NV-KGRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELK- 297

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R  DPD+++  +F  + ++  F + M  L  G+ P+ + +  ++ E++ HR  V+ RR+ 
Sbjct: 298 RDADPDIVLNQLFQFTPIQDTFSIIMLALVDGK-PRTLTIRDLIDEFIRHRVIVIRRRTQ 356

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS--------------- 422
           F +    +R   ++GLL+A  +IDEII IIR+                            
Sbjct: 357 FLLSRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEE 416

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                           LT  Q DAIL + L  L  LE+ ++  E   LLAE  +   +L+
Sbjct: 417 GFELFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILS 476

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             +     I  ++ E++  F      G +R T   +         + +IE+E + V IS+
Sbjct: 477 DERNIREIIRDQMLEIEAKF------GDKRRTEISLEELGY-IDLEDLIEEETMVVSISH 529

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+I+          +     +     ++ D ++    A T   +L  +T GK Y     
Sbjct: 530 SGYIKRTPATTYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVY 589

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIV---TAFVYD-STCKLLVVSSKGNAFIVEESEII 632
           +L   S    G AI  L+ L   + I        +D     L++ + KG     +     
Sbjct: 590 DLPQLSRESRGRAIVNLLQLEEGERIADCRAVRDFDVEDHYLVMATRKGLVKKTKLEAYS 649

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
              +KG   +K+  ++++  VV    GD + +       + F       M R   GV+  
Sbjct: 650 RPMKKGIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPMGRNSSGVKGI 709

Query: 691 SYK-DGGISDVICFKICEGLTWIDSAGRSYNR---------------------------- 721
               D  +  ++       L  +   G                                 
Sbjct: 710 KLDADDELVGMVVADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEE 769

Query: 722 --------SENDLL------GWLGKRGGVGSLVPKGFPRSGKFLS 752
                   S +D            +RGG G    K   R+G+ +S
Sbjct: 770 EPVVEDEASGDDDELSSGAKYRTQRRGGKGLRDIKTTARNGRVVS 814



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 61/262 (23%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E  R       +    ++   V+ + +G ++  K  +        + A+  +E D L
Sbjct: 608 QLEEGERIADCRAVRDFDVEDHYLVMATRKGLVKKTKLEAYSRPMKKGIIAIKLREDDEL 667

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYD 609
              +     D ++L ++ G A      +    R  G     +  I L+ + ++V   V D
Sbjct: 668 VDVVVTQPGDELVLSTSKGMAIRFCESD---ARPMGRNSSGVKGIKLDADDELVGMVVAD 724

Query: 610 STCKLLVVSSKGNAFIV------------EESEIIAN----------------------- 634
              +LL V   G+                  S+  AN                       
Sbjct: 725 PDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEEEPVVEDEASGDDDEL 784

Query: 635 ---------TRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
                     R GK          +   + +V     D V ++    K+   S  +I  +
Sbjct: 785 SSGAKYRTQRRGGKGLRDIKTTARNGRVVSIVRVDDEDEVLMMTARGKIQRVSAAEISIV 844

Query: 682 SR-GKGVRLQSY-KDGGISDVI 701
            R  +GVR+ S  KD  ++ V+
Sbjct: 845 GRNTQGVRIMSLDKDDSLAAVV 866


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/744 (36%), Positives = 422/744 (56%), Gaps = 30/744 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E+  +V L  +    YL YA++ +K RA+PD++DG KPV RR++ AM E+GL   A   K
Sbjct: 31  EDDDSVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVK 90

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S YD++VR+AQPF+ RYPL+ GQGNFG+ DGD+AAA RYTEA
Sbjct: 91  SARVVGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEA 150

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T +AEL+L  + E  VDF+  Y+    EP   P++ P LL NG SGIAVGMAT IPSH
Sbjct: 151 RLTAIAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSH 210

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+  AA+  I++P   +++L+E+I GPD+P GG I+ S   I  +Y  GRG  RVRA
Sbjct: 211 NLREVAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRA 270

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL----------------- 297
           R+  EE+ RG+W +V  E+P  V  ++++ +I  L+  +  P                  
Sbjct: 271 RYEFEEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMAS 330

Query: 298 -LEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            L+  RDES   +DVR+V  P +  +D +  +  +   + +ET  P+N+  + +   P  
Sbjct: 331 QLDRARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQ 390

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  ++ EW   R   + RR+ FR+Q  D R+ IL+G  I +LNIDE+I IIR  D PK
Sbjct: 391 KSLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPK 450

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +++RF+L++ Q + IL +RLR L +LE  +I+ ELD L  E+E +  LL S      Q
Sbjct: 451 AALIARFTLSDRQAEDILEIRLRQLARLEGIRIEQELDKLRGEREGLLKLLGSDALLRRQ 510

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  EI+   E    +     RRT     +    +  + A +  EP+TV+IS +GW R  +
Sbjct: 511 VIREIKADAEKHGDA-----RRTIIL--AATTASRSEVAAVADEPVTVIISEKGWARVRQ 563

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
            H +DLS + FK+GD    A    + D ++++S++G+A+T+   +L  GRG G  +   +
Sbjct: 564 GHGLDLSGVVFKDGDRAGSAQECRSVDSLVIISSEGRAFTVAIASLPDGRGMGAPLSSFV 623

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL     I       +  +LL   + G  FI    ++++  + GK FL V     +   +
Sbjct: 624 DLGGG-KIAHVLTGRADDELLFAKTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPL 682

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
           ++ G DH+A + E+ +LL+F + Q+  ++ GKGV++   +D      +   +      I 
Sbjct: 683 RIAGKDHLAALSEDGRLLVFPLAQMKRLASGKGVQIIGLRDAETLRAV-LAVQGSRVTIK 741

Query: 714 SAGRSYNRSENDLLGWLGKRGGVG 737
              R+  ++       L +R   G
Sbjct: 742 GTARNRIKTLVSEDRHLAQRARRG 765


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/734 (29%), Positives = 389/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSTLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ +T G     P   L     +  GE + Q + +   N++I+ A V   +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
             V +  G    VE  E     T K K+    K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K                  +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 PATSRAKRGLQVLR 724


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/743 (28%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 24  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 83

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 84  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 143

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 144 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 203

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 204 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 262

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 263 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 322

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 323 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRRDIIVAR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI+
Sbjct: 382 SKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIV 441

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 442 TLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKF------ 495

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S    +  ++ D
Sbjct: 496 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDD 555

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + + + +++++ A 
Sbjct: 556 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 615

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVSSE-EKMKLVVKVTGDH 660
           + D   T   L  +  G     E  E     T K K+    K+  E + +  V  +  D 
Sbjct: 616 ILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDD 675

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 676 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLLTQRASLK 735

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             + +D+     KR G G  V +
Sbjct: 736 RVATSDI--PRAKRAGRGLQVLR 756



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K+EE   + + D +L ++ K    L     Q N I   I E+ +I  +  DLG   +  
Sbjct: 544 SKIEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDI--RWKDLGEHLSQT 601

Query: 500 CEVSRADKATLQQAMIEKEPI--TVVISNRGWIRSLKSHSVD---------LSALHFKEG 548
                 D+  L   +++       +  +  G I+  +              +     K+ 
Sbjct: 602 ITNFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDE 661

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
             + + +     D I++++  G A    A  +     +  G      I+L  +  +   F
Sbjct: 662 SDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVG---VKAINLKDDDKVQAVF 718

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           V ++    L+ + + +   V  S+I    R G+    +  
Sbjct: 719 VANTQSFYLL-TQRASLKRVATSDIPRAKRAGRGLQVLRE 757



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           +   +      +    ++I+ +G+     +  V         + A++ K+ D ++    A
Sbjct: 661 ESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVA 720

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL----------------NHNQD 601
           +T     LL+       +   ++   +  G  +Q+L +L                N   +
Sbjct: 721 NT-QSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFTAGPVFTENAGAE 779

Query: 602 I-VTAFVYDSTCKLLVV-SSKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
           I + A   + T ++L V ++ G    V+ S   +   T  G     ++ +E
Sbjct: 780 IDLLATPVEETPQILFVIATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 830


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 391/757 (51%), Gaps = 37/757 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI+ AM E+GL     F+K 
Sbjct: 15  RVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAPDRPFRKC 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGD +VYD+LVRL Q F  RYPL+SG GNFG+ID D  AA RYTE R
Sbjct: 75  ARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTECR 134

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +  V  + +L  +D+  V+F D ++    EP V P++ P LL NG++GIAVGMAT+IP H
Sbjct: 135 LAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGMATNIPPH 194

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +ALIDNPE++ E+LL  I GPDFPTGG I+   E I E+Y  GRG   +R 
Sbjct: 195 NLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQII-GTEGIREAYLTGRGSITMRG 253

Query: 255 RWCVEEVGRGSWC---IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
               EEVG G      I+VT +PYQV K+  IEK+AEL+   ++  + D+RDES  +   
Sbjct: 254 ITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDESNREGVR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R   P+ ++  ++ L+ ++  F   +  L  G+   +   + + + +L  R   
Sbjct: 314 VVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRELLEQ-FLEFRVAT 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQV 428
           L RR  + ++    R   L+G L+A  N+  I+ ++                + L+E Q 
Sbjct: 373 LTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAELEASYGLSERQS 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL + LR L +L+  ++ SE   L  +  ++ S L+S ++    +  E+R++K+  + 
Sbjct: 433 EEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHAD 492

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSA 542
                  R T  E   A   TL +   + E + V +++RG++R + + + +       + 
Sbjct: 493 P------RRTCIEARTAPLPTLAEITSDDE-VVVQLTHRGYVRRIPAAAFERRSRSRRAV 545

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              ++ D +  +    T + +L+++  G+AY+L    +     R  G  +  L+ +   +
Sbjct: 546 SRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTLLSIQ-GE 604

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656
            I   FV   Y     L++++ +G    +  SE    T +G   LK+S E+++  V +  
Sbjct: 605 QIAATFVRENYPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLAT 664

Query: 657 TGDHVAVVGENRKLLIF--SIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
               + V     +LL F     Q+P M R   G++    + G     +   +  G   + 
Sbjct: 665 AHSQIVVGTSAGRLLRFVADEAQLPAMGRSALGLQAIKLRRGESLAAMTV-VGNGEDLLM 723

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF--PRSG 748
            +     +        L +R G+G   P G    R+G
Sbjct: 724 VSRLGLGKRLKTGEIRLQERAGLG--TPVGLLRERNG 758


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 223/755 (29%), Positives = 397/755 (52%), Gaps = 29/755 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+
Sbjct: 4   KNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ +++D V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P  S++KL+E+I GPDFPTGGI ++ +E I ++Y  GRG   +R
Sbjct: 184 HNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGI-LQGKEEIKKAYETGRGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E++  G   IV+ EIPY+V K+ L++K+ E+ + K+I  + ++RDE+      ++
Sbjct: 243 SKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +   R  QV  L  IL+ ++ HRREV+ 
Sbjct: 303 VELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMRPQQV-GLKHILESYVKHRREVIA 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDA 430
           +RS + ++   +R  I+ GL+ A   +DE+IA IR+    K    +   +   TE Q +A
Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHGFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +  Q+++E   L     ++  +LN   +    I  E+RE+K+ +    
Sbjct: 422 IVTLQLYRLTNTDITQLQAEAQELAETIRELTKILNEETELLKVIKKELREIKKKYH--- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
                R T  E    +     Q ++ +E + V ++  G+++     S   S    L  KE
Sbjct: 479 ---SDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYVKRSSLRSYGASKPEELGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVT 604
           GD+L  +  A T D +LL++  G     P   L     +  GE I Q +++L   + I+ 
Sbjct: 536 GDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKWKDLGEHISQTVMNLATEETILA 595

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVT 657
            F Y   D     +++S  G       +E         +  T +K+  E +++  V    
Sbjct: 596 VFTYQELDPQKNFVLISKNGMIKQTRMTEFEPWRTYKSRPLTMMKLKDEADELVNVYLAD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WI 712
            +    V +V      L + + ++P +  +  GV+  + K+            EG T  I
Sbjct: 656 QNEPLDVFLVSYRAFGLRYPLAEVPVVGPKAAGVKAMNLKEDDQIVNGLLVYSEGDTPVI 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +           R   G +V +   ++
Sbjct: 716 MVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKN 750



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/451 (11%), Positives = 144/451 (31%), Gaps = 39/451 (8%)

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------IIAKRIPLLEDIRDESAED 308
           +  +E   +    ++     Y+++K++  + I +       I+ + I  +   +D+    
Sbjct: 346 KHILESYVKHRREVIAKRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAK 405

Query: 309 VRIVLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
             +V+         + ++   ++ L++ +         L          +  + K     
Sbjct: 406 NNLVVQHGFTEEQAEAIVTLQLYRLTNTDITQ------LQAEAQELAETIRELTKILNE- 458

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
               L +     ++ I ++    +          EI  I               ++T + 
Sbjct: 459 -ETELLKVIKKELREIKKKYHSDR----MTEIEAEIQEIKIETQVLVAQEDVVVTVTTDG 513

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE-IF 486
                +LR     K EE  +K     L + +      L     + N I   I E+ +  +
Sbjct: 514 YVKRSSLRSYGASKPEELGMKEGDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKW 573

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539
               +   +            A      ++ +   V+IS  G I+  +    +       
Sbjct: 574 KDLGEHISQTVMNLATEETILAVFTYQELDPQKNFVLISKNGMIKQTRMTEFEPWRTYKS 633

Query: 540 --LSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLI 594
             L+ +  K+  D L     A   + + +     +A+ L  P   +         ++ + 
Sbjct: 634 RPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEVPVVGPKAAGVKAM- 692

Query: 595 DLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EE 648
           +L  +  IV   +   +    +++V+ +G    +   EI    R  +  + +        
Sbjct: 693 NLKEDDQIVNGLLVYSEGDTPVIMVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKNPH 752

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679
           ++  +       + +  +  +++    +QIP
Sbjct: 753 RIVYMGSGENQSLILTTQKGQMIEIETNQIP 783


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/764 (31%), Positives = 389/764 (50%), Gaps = 49/764 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE ++L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGGII+ +   ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNL-GVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RR+   +    D   +   +I  E + + +S +G+++ +K          ++ 
Sbjct: 576 SP-----RRSMLEDSDSGDLEDI--DVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIG 628

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
            S    +  D++   L  H  D +L  S  G  Y+  A  +   S    G  +  ++ ++
Sbjct: 629 KSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMS 688

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + +      +     LL+++  G    V           G   ++++S +++K V 
Sbjct: 689 EGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVR 748

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK------------------- 693
             + D  VA+  +N  + + + D +  +SR  KGV     K                   
Sbjct: 749 CCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDM 808

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +    D    K   G   +      Y +          +   VG
Sbjct: 809 EEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVG 852



 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 30/208 (14%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G I+ +         S  + A+    GD LK     
Sbjct: 691 ERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCC 750

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
            + D + + S +G    L   + +            + L +   I +  +  ++ +    
Sbjct: 751 SSDDLVAMASQNGMV-ALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDME 809

Query: 614 ----------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVK 655
                           LL V   G    V  S    +   R G +  KV S     LVV 
Sbjct: 810 EKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSPFLVV- 868

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            + + V +V ++  +    +  I   SR
Sbjct: 869 FSDEQVVLVSQSGTVNRIKVRDISIQSR 896


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 227/761 (29%), Positives = 393/761 (51%), Gaps = 38/761 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + +   +   +  YA+S I +RA+PD RDG KPVHRRI+++M ++G+    A KKSAR+
Sbjct: 17  ELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARV 76

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+GK HPHGD + YDS VR+AQ +  R+PLI GQGNFG+IDGD+AAA RYTE R+++
Sbjct: 77  VGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLSK 136

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   +   + ++ VDFRD ++  + EP V P  +PNLL NG+ GIAVGMATS+P HN++E
Sbjct: 137 LGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRE 196

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
             +A LA +DNPEI+  ++ +++ GPDFPTGGI +   +  +++   GRG  ++R++W V
Sbjct: 197 TADAFLAWLDNPEITTREIAQHMPGPDFPTGGI-LHDLDGYIQALDTGRGAVKLRSQWTV 255

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+  RG   +V+ +IPY V K++L+E+IAEL+  K+I  + D+RDES +    ++    R
Sbjct: 256 EDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIKR 315

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             + + +   +  ++ +ET    N+  L  G+ P  + +  + + + AHR EV+ RR+ F
Sbjct: 316 EFEAEAIAFQLVTMTQLETSVRYNIMALV-GQTPMQLGVRDLFEHFRAHRIEVIQRRTQF 374

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAILNLR 435
            +     R+ IL+GLL+A   +DE IA IR              L      Q  AIL+++
Sbjct: 375 DLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQAQAILDMK 434

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L+ L  L+   I+ E D L AE   +  +L   ++Q   +  E+ ++ +  +        
Sbjct: 435 LQKLTGLQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHANE------ 488

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKE 547
                E+  +        +I +E + ++ + +G+++             +   S +   E
Sbjct: 489 --RCTEIDTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGE 546

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605
            D +      H+ D ++ L+  G+ + + A ++        G   + + +     ++V  
Sbjct: 547 DDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEG-NVVAM 605

Query: 606 FVYDS----TCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH 660
              D     T  L++ +++G       S     TR+ G   + +   +   +  +V+ D 
Sbjct: 606 LTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNATRRGGIQGISLVEGDS-IVCARVSKDE 664

Query: 661 ----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS---DVICFKICEGLTWI 712
               V V  +N K + F +++   + R  +GVR  +  +       D+I     E    +
Sbjct: 665 PNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDLEKAHLM 724

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             + +   ++       L  RGG G        RSG  +++
Sbjct: 725 VVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRSGPVVAA 765


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 215/734 (29%), Positives = 387/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 404/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGI-IQGVDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/744 (29%), Positives = 396/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIQKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVSILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SHFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 535 RLIFVQVAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V +V  N   L F+I+++P +  +  GV+  + K     ++    IC   ++     R 
Sbjct: 655 DVLLVSRNGYALRFNIEEVPVVGAKAAGVKAMNLKAE--DELQAAFICNTSSFYLLTQRG 712

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 713 SLKRVSIDEIPATSRAKRGLQVLR 736


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 222/744 (29%), Positives = 395/744 (53%), Gaps = 27/744 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++
Sbjct: 186 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 305 LKKEANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 364 SRFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 481 ---RLSTLEDTAKAIEIDTASLIAEEDAYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+   
Sbjct: 538 RLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVE 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGD 659
           V   +D        +  G    VE  E     T K K+    K+  E +++  V  +  D
Sbjct: 598 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 657

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V ++  N   L F+I+++P +  +  GV+  + K+                 +    R 
Sbjct: 658 DVLLISLNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFICNTSSFYLLTQ--RG 715

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +        R   G  V +
Sbjct: 716 SLKRVSIDEIPATSRAKRGLQVLR 739



 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 45/228 (19%)

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA------ 505
           ++L       ++   + +  + ++  +  +    F+ +     +R    E S        
Sbjct: 578 EHLSQTITNFET---NEEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSK 634

Query: 506 ---------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548
                    +   +      K    ++IS  G+        V         + A++ KE 
Sbjct: 635 SVKYAKLKDETDQIVAVAPIKLDDVLLISLNGYALRFNIEEVPVVGAKAAGVKAMNLKED 694

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-------- 600
           D+L+ A   +T+   L L+  G    +    + +       +Q+L +L +          
Sbjct: 695 DTLQSAFICNTSSFYL-LTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGA 753

Query: 601 --------DIVTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKG 638
                   D+ +  V ++   LLV S+KG  +   +++  +   T  G
Sbjct: 754 VAEQGFVGDLFSTEVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNG 801


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 387/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 223/743 (30%), Positives = 396/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG I ++  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  ++  +D++  +  NM  +      QV  L  IL  ++AHRRE++  R
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQV-GLQKILSSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L     +  GE + Q L++ + +++I+ A 
Sbjct: 535 QLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
           + +         V+  G    VE  E     T K K+  + K+   E+ +  V  V  D 
Sbjct: 595 LVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ E    L F+I+++P +  +  GV+  + KDG +  V+   I    +      R  
Sbjct: 655 IMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDGDV--VVAAFISNTSSVYLLTQRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 FKRMATEEIPVTSRAKRGLQVLR 735


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/761 (31%), Positives = 407/761 (53%), Gaps = 32/761 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++ +  + +   ++  +L YA+S I  RA+PD RDG KPVHRRI++ MSE+G+  G   +
Sbjct: 72  QDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHR 131

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVY+++VR+AQ F  RYPLI   GNFG+IDGD AAA RYTE
Sbjct: 132 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMRYTE 191

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++VA L+L+G+ +D VDF D Y+  + EP V PS+FPNLL +G SGIAVGMATSIP 
Sbjct: 192 ARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 251

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A +AL  NPEISI +++E++ GPDFPTG +I+   + I E+Y  G+G   VR
Sbjct: 252 HNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIM-GTKGIKEAYETGKGSISVR 310

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +E +  G   I+V+EIPY+++K+ +IEKIA+L+  K I  + D+RDES  +   ++
Sbjct: 311 SIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRII 370

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +   P++++  ++  + +++ + +N   L  G  P+++ +   L+ +L H+  V+ 
Sbjct: 371 IDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVT 429

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RR  F +     R+ IL+GL IA  NIDE+I II++       +  + +RF L+E Q  A
Sbjct: 430 RRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTRFDLSEKQTKA 489

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L    +  E+ NL AE E+I ++L +       I  E+ E+K  ++   
Sbjct: 490 IVDMRLGRLTGLAVDSMIEEMQNLAAEIERITNILANRDLLIELIIDELTEIKNKYADE- 548

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
                R T  +      +   + +I K  I +  S +G+++          +   V ++ 
Sbjct: 549 -----RRTVID-KNISASINDEDLISKRDIVITTSTKGYVKRIDLEEYKTQRRGGVGITT 602

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID---LN 597
           +     D +   +   T   +L+ +  G+ Y + A  +     +  G +   +I    ++
Sbjct: 603 MKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVD 662

Query: 598 HNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + +++    D       L   +  G       SE       GK    +  E+++    
Sbjct: 663 EGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQIININGKRAFNLKEEDELIRAS 722

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
            +  D  + +    ++++ F  ++   +SR   GV+  +  +   + +      EG   +
Sbjct: 723 IIDDDELILLANSKQRIVKFHSNEFRALSRIATGVKGITLAEDE-TCISASSSSEGELIL 781

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 + +  +  L  L  RGG G +      ++G  + +
Sbjct: 782 TIGKNGFGKITHHSLFRLVHRGGKGVIGIN-SDKAGNLVFA 821



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 83/259 (32%), Gaps = 11/259 (4%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +  + +   A EI E+      ++ +        +      + L       +      + 
Sbjct: 628 NHGRVYRIRAHEIPELNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATK 687

Query: 527 RGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            G I+                A + KE D L  A      + ILL ++  +     +   
Sbjct: 688 LGIIKKTSLSEFQIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEF 747

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
            +       ++  I L  ++  ++A        +L +   G   I   S      R GK 
Sbjct: 748 RALSRIATGVKG-ITLAEDETCISASSSSEGELILTIGKNGFGKITHHSLFRLVHRGGKG 806

Query: 641 FLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696
            + ++S++   LV        D + ++  +   +   I  I E  R  KGV+L + K   
Sbjct: 807 VIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKE 866

Query: 697 ISDVICFKICEGLTWIDSA 715
               +     E  + +D  
Sbjct: 867 QIQAVEIVKLESDSTLDET 885


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
 gi|332204860|gb|EGJ18925.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47901]
          Length = 811

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 388/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/734 (29%), Positives = 386/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 233/749 (31%), Positives = 400/749 (53%), Gaps = 32/749 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD+RDG KPV RRII++M E+ L+    +KKSARIVG
Sbjct: 4   PIEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVG 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD ++YD+L R++Q F  RYPL+ GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 64  ETMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++ +D++ V F   ++   +EPV FPSK P LL NGTSGIAVGMAT++  HN+ E+C
Sbjct: 124 EEMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVC 183

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A    ID+ + S+  LL++I GPDFP GGII  +++ +++ Y+ G G    R     E+
Sbjct: 184 DAIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKD-MIDIYKTGHGKVICRGSIEAED 242

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++  +PY + K++ I+ +A L+   +I  + DI+DES  +   ++       
Sbjct: 243 -----KRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHD 297

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             DL++  ++  + +ET   +   VL    VP VM L+ ++K ++  R +V+ +RS + +
Sbjct: 298 RIDLVVNQLYEKTQLETSISVTNLVLLDN-VPVVMNLEDLIKNFIGFRLDVIKKRSEYDL 356

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLR 437
           + ++ R+ IL GLLIA  NID +I IIR+       +  ++   SLTE Q +AIL++RL+
Sbjct: 357 KKLNERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKELSLTEAQANAILDMRLQ 416

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  ++K E+D +  + E +  ++N+   + N +  E+ E+K+ +       RRRT
Sbjct: 417 RLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKNVLKAELDEIKKQYGD-----RRRT 471

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LHFKEGDS 550
              E   + +   ++ +I  E   +++S +G ++ +                 + ++ DS
Sbjct: 472 EVIEGEISRRD--EEDLIPNEESVIILSEKGLLKRVSLDEYKSQRRGGRGIITNTRDNDS 529

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           +K  +     D +   +  G+     A  +     +  G +    + LN N+ I      
Sbjct: 530 VKSVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRDRKALGVSGNKFLKLNDNEIIRQIIKS 589

Query: 609 DSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVG 665
               +  L++V+  G       SEI+   + G   + +++ +++  V +++G   + V  
Sbjct: 590 PENLEDLLIIVTKNGFIKKTNISEILDMRKSGIKIINLANNDEVVSVSEISGSSKIFVAA 649

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            N K  +F  D++P  SR  +GV+        +  +  F + +  T +        +   
Sbjct: 650 SNGKAAVFLSDEVPLTSRSSRGVKSMKLNGSYV--ISAFPVKDDDTILSITENGLGKRTR 707

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   RG  G  + K   ++GK + +
Sbjct: 708 ATEFPEHHRGSSGVYLFKENEKTGKLVMA 736



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 17/199 (8%)

Query: 518 EPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           E + ++++  G+I+       L      +  ++    D +        + +I + +++GK
Sbjct: 594 EDLLIIVTKNGFIKKTNISEILDMRKSGIKIINLANNDEVVSVSEISGSSKIFVAASNGK 653

Query: 572 --AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
              +      L S    G     L    +   +++AF       +L ++  G       +
Sbjct: 654 AAVFLSDEVPLTSRSSRGVKSMKL----NGSYVISAFPVKDDDTILSITENGLGKRTRAT 709

Query: 630 EIIANTRKGKTFLKVSSEEK---MKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           E   + R           EK   + + + V   D + +V +N + +      I  +SR  
Sbjct: 710 EFPEHHRGSSGVYLFKENEKTGKLVMALPVKDDDEIIIVTKNDQTIRIKSSDISILSRFA 769

Query: 685 KGVRLQSYKDGGISDVICF 703
            GVRL    +       C 
Sbjct: 770 SGVRLVGLTENDSISTACV 788


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKAIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ ++ A 
Sbjct: 535 ELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDESVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   +      +  G     E  E     T K K+    K+ + ++ +  +  +  D 
Sbjct: 595 IVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + KD            +    +   G S 
Sbjct: 655 VMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFILTQRG-SL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   +L+     R   G  V +
Sbjct: 714 KRMATELIP-ATSRANRGLQVLR 735



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              +++++ G+        V         + A++ K+ D +  A  A+T D   +L+  G
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANT-DSFFILTQRG 711

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +    + +       +Q+L +L  
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELKS 739


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 221/761 (29%), Positives = 395/761 (51%), Gaps = 30/761 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G  +   F+K
Sbjct: 6   QKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKGFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEA
Sbjct: 66  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+  VDF   +++   EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  + LID+P+ ++EK++ ++ GPDFPTGGI ++  + I ++Y  GRG   VRA
Sbjct: 186 NLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGI-LQGLDGIKKAYETGRGRVVVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IV++EIPY+V K+++++KI EL + K++  + ++RDES      V+ 
Sbjct: 245 KTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSVVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +S  +  QV  L  IL  +L H+ EV+ R
Sbjct: 305 ELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQV-GLLEILHAYLKHQEEVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R+ I+ GL+ A   +D++I+ IR   N+   K  +V+++  TE Q +AI
Sbjct: 364 RTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLVAQYDFTEAQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E   L        ++L + K+    I  E++ V + +     
Sbjct: 424 VSLQLYRLTNTDVTALEAEAAELKTAVAGYQAILGNPKELARVIKAELKSVVKAY----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R T  E             +  E + V +S+ G+++     S   S       KEG
Sbjct: 479 -RNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYLKRSSLRSYQASEGADGGLKEG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D   +     T D+++L +  G     P   +     +  GE I   I L  ++ I+ AF
Sbjct: 538 DFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIADLKWKEMGEHISQSIGLAADEAIIAAF 597

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKT--FLKVSSEEKMK---LVVKVT 657
            +   + +   ++ ++ G        +++ + T + K   F+K+ +   +     V +  
Sbjct: 598 SFTPNEQSGYFVIGTTDGYIKQTAFQDLLPSRTYRSKAQDFIKLHAGANVTNVYWVSETD 657

Query: 658 GDHVAVVGE--NRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEG-LTWI 712
               A+     N   L F+++++     +  GV+L   KDG  +++   F   E      
Sbjct: 658 AQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDHVANFTLFDPAEKHAAVA 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               R   +        L  R   G L+ +   R    +++
Sbjct: 718 IITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPHRVAA 758


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/754 (28%), Positives = 400/754 (53%), Gaps = 26/754 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EK++E++ GPDFPTGGI ++ +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGI-IQGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +   
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +R
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIIKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F +   ++R+ I++GL+     +DE++A IR   N+   K  +   F  TE Q +AI+
Sbjct: 361 SQFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+K    
Sbjct: 421 TLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFAKP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +            +I  E   V ++  G+I+     S   SAL     ++ D
Sbjct: 478 ---RRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L + + ++ ++   
Sbjct: 535 ELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRWKDIGEHLSQSLSNFSSDEKVIYVQ 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
           + D  +   L+VV+  G    +E        T + K+  + K+   ++++ L+  V    
Sbjct: 595 IVDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEIVLISPVQFTD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ EN   L F++D +P +  R  GV+  + K+        F      +W     R++
Sbjct: 655 LMIISENGYALRFNLDDVPVLGARAAGVKAMNLKNDDKIKAAFF--VNSNSWYLLTQRAF 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +           R   G  V +    +   + +
Sbjct: 713 IKRVKTEDIPATSRANRGLQVLRTLKTNNHTVFA 746


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 387/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/751 (27%), Positives = 388/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  I GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNCTVDDLLAIIKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVIELKKEANAEGILNYLYKNTDLQITYNFNMVAINNR-RPTLMTLPNILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL+ A   +D++I  IR        K  ++++FS TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAKFSFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   +++E + L  +   + ++LNS K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALENEAEELNQKITTLQAILNSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R +  E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 E------RRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ ++
Sbjct: 533 KEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFVVFVTRNGMIKKTELNQYKVQRYSRAFVAINLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            E   ++    
Sbjct: 653 TSDIVLATHGAYALIFDEEEVSPVGVRAAGVKAINLKEDDYVAAGKPLNSEKDQFMLVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 256/746 (34%), Positives = 405/746 (54%), Gaps = 40/746 (5%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
                RYL YA+S +  RA+P   DG KPV RRI++AM  MGL       KSAR+VG+VI
Sbjct: 72  DYAARRYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVI 131

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD SVYD++VR+AQ +  RYP++ GQGNFG+ DGD+AAA RYTEAR+T +AEL+
Sbjct: 132 GKYHPHGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELL 191

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +DE  VD++  Y+  + EP + P++ P  L NG SGIAVGMAT IP+HN++E+  AA
Sbjct: 192 LAELDEGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAA 251

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           + LI NP+   +++L+ I GPD+P G  I+ S E I  +YR GRG  RVRA+W +E + R
Sbjct: 252 VNLIRNPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLAR 311

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAEL--------------------IIAKRIPLLED--I 301
           G W +V+TE+P  V  + ++ +I                       + A  +  + +  +
Sbjct: 312 GQWKLVITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGV 371

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V+ P +     D L+  +   + +ET   +N+ +L +   P+   L  
Sbjct: 372 RDESGKEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYS 431

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           ++ EW   R   + RR+  R+ A ++R+ IL+G     L+ID +I +IR  D PK  +++
Sbjct: 432 MIAEWCRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKADLMA 491

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L+E Q + IL +RLR L +LE  +I  EL  L  E   ++ LL+S +     +A EI
Sbjct: 492 HFKLSEIQAEDILEIRLRQLARLEGIKIGEELAKLREEAAGLNKLLDSEEALRACVAAEI 551

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
               + +        RRT     ++   +  +   I  EP T+++S  GW+RS   H++D
Sbjct: 552 EADAKKYGD-----DRRTLIEADAKVTMSDAKTVSIVDEPTTLIVSKHGWLRSRTGHNID 606

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
            + L F+ GDSL   L   T D +++L   G+AY++ A ++  G+G G     ++D    
Sbjct: 607 PTQLTFRSGDSLLACLPCRTVDSLIILDHLGRAYSISAADIPGGKGDGVPATSVVDFQDG 666

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +  A    +  + LV +  G  F  + S+ ++  + GK FL +   E   + +    +
Sbjct: 667 GKLCLALSTSADKRYLVAADGGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAE 726

Query: 660 -HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             +A V ++ + L+F+I+++  +++G+G++L     G  +      + +G      AG+ 
Sbjct: 727 GEIACVTKDGRALVFNIEEVRLLAKGRGLKLIDAAPGKTALEEIIPVVDG-----VAGKL 781

Query: 719 YNRSENDLLGWLGKRGGVG--SLVPK 742
                  L    G RGG G     P+
Sbjct: 782 KGER---LEICRGNRGGKGKPVKAPR 804


>gi|332970389|gb|EGK09381.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella kingae ATCC
           23330]
          Length = 757

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 267/753 (35%), Positives = 419/753 (55%), Gaps = 37/753 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +   ++L    E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KS
Sbjct: 4   SADTLNLADYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLAHGAKPVKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 64  ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN
Sbjct: 124 LTPIAELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ L+  P + +  L++Y   PDF  GG I+ S + +   Y+ G+G  RVRAR
Sbjct: 184 LNEVTQAAIVLLKKPNLEVADLMKYCPAPDFAGGGHIITSAKDLQNIYQSGKGSVRVRAR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPL 297
           + ++++ RG W ++V+E+P     ++++ +I E                        + L
Sbjct: 244 YEIDKMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDL 303

Query: 298 LEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           +E +RDES     VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P   
Sbjct: 304 IEKVRDESDSEHPVRLVFEPKSSRVEPEHFINTLMAQTSLEGNVSINLVMMGMDNRPAQK 363

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  IL+EWL +R   + RR   R+ A+++R+ IL+G +IA+L+IDEII +IR  D+PK 
Sbjct: 364 NLKTILQEWLDYRVATVTRRLQHRLDAVEKRIHILEGRMIAFLHIDEIIKVIRESDEPKA 423

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++++F+LTE Q + IL +RLR L +LE  +++SEL+ L  E+  +  LL     +   I
Sbjct: 424 DLIAKFNLTEIQAEDILEIRLRQLARLEGIKLESELNELRDEQSSLQHLLADENDKKKLI 483

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E++      + +   G  R T  E +     T        EPIT+++S +GWIR+   
Sbjct: 484 IKEMQ------ADAKQFGDERRTLVEAAERATLT---QTTADEPITLILSQKGWIRARAG 534

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H VDLS + FKEGD L+  L   T   +++L T G++YT+   ++  GRG G  +  LID
Sbjct: 535 HDVDLSQIAFKEGDDLQQVLETRTVQPVIVLDTLGRSYTIDPADVPKGRGDGVPVGSLID 594

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +     ++T          L+ +S G  FI +  ++ +  + GKT + + S E   L  K
Sbjct: 595 IQAAASVLTMIAGSVDEHYLLANSGGYGFICKLEDLHSRLKAGKTIMMLESGEVALLPEK 654

Query: 656 V-------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708
           V           + +     +LL F I ++  M++G+G++L S +D     ++       
Sbjct: 655 VYLSSLINPDCKIVLATAQNRLLAFPIGEMKIMAKGRGLQLISLQDDDKLVLMKMVNTPD 714

Query: 709 LTWIDSAGRSYNRSEND-LLGWLGKRGGVGSLV 740
            T      RS    E   +   + KRG  G ++
Sbjct: 715 YTLEIVGKRSGVSHETLHVSDIVNKRGRKGKIL 747


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG I ++  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  ++  +D++  +  NM  +      QV  L  IL  ++AHRRE++  R
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQV-GLQKILSSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L     +  GE + Q L++ + N++I+ A 
Sbjct: 535 QLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
           + +         V+  G    VE  E     T K K+  + K+   E+ +  V  V  D 
Sbjct: 595 LVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ E    L F+I+++P +  +  GV+  + KD  +           +  +    R  
Sbjct: 655 IMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDEDVVAAAFISNTSSVYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMATEEIPVTSRAKRGLQVLR 735


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 387/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/743 (28%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRRDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E  NL  +   + +++   +  +N +  E+R++K+ F      
Sbjct: 421 TLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
           G  R +  +           ++I +E   V I+  G+++     S + S    +  ++ D
Sbjct: 475 GNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L +   A TT  +L+ +        P   L     +  GE + Q + + + +++++ A 
Sbjct: 535 DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVSSE-EKMKLVVKVTGDH 660
           + D   T   L  +  G     E  E     T K K+    K+  E + +  V  +  D 
Sbjct: 595 ILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ +    L F+ D++P +  +  GV+  + KD      +     +    +       
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLLTQRASLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             + +D+     KR G G  V +
Sbjct: 715 RVATSDI--PRAKRAGRGLQVLR 735



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K+EE   + + D +L ++ K    L     Q N I   I E+ +I  +  DLG   +  
Sbjct: 523 SKIEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDI--RWKDLGEHLSQT 580

Query: 500 CEVSRADKATLQQAMIEKEPI--TVVISNRGWIRSLKSHSVD---------LSALHFKEG 548
                 D+  L   +++       +  +  G I+  +              +     K+ 
Sbjct: 581 ITNFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDE 640

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
             + + +     D I++++  G A    A  +     +  G      I+L  +  +   F
Sbjct: 641 SDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVG---VKAINLKDDDKVQAVF 697

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           V ++    L+ + + +   V  S+I    R G+    +  
Sbjct: 698 VANTQSFYLL-TQRASLKRVATSDIPRAKRAGRGLQVLRE 736



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           +   +      +    ++I+ +G+     +  V         + A++ K+ D ++    A
Sbjct: 640 ESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVA 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL----------------NHNQD 601
           +T     LL+       +   ++   +  G  +Q+L +L                N   +
Sbjct: 700 NT-QSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFTAGPVFTENAGAE 758

Query: 602 I-VTAFVYDSTCKLLVV-SSKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
           I + A   + T ++L V ++ G    V+ S   +   T  G     ++ +E
Sbjct: 759 IDLLATPVEETPQILFVIATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 809


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/734 (29%), Positives = 387/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRTSENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
              V+  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 218/753 (28%), Positives = 397/753 (52%), Gaps = 32/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G     +F+
Sbjct: 4   KHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKSFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++V+  +L+ +D++ V+F   +++ + EP V PS FPNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P+ S+EKL+ +I GPDFPTGGI ++  + I ++Y  G+G   +R
Sbjct: 184 HNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGI-LQGADEIKKAYETGKGKVILR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE+  G   IV++EIPY+V K+ L++++ E+ I K+I  + ++RDES      ++
Sbjct: 243 SKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + ++  +F  +D++  +  NM  +     P+ + L  +L  ++AHR+ V+ 
Sbjct: 303 VELKKEVNAEGILNYLFKNTDLQVNYNFNMVAI-DQMRPKQVGLKQMLSSYVAHRQSVIL 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS + ++    R  I+ GL+ A   +DE+I  IR        K  ++   + T+ Q +A
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKNNLILAHAFTQEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +  Q++ E + LLA   ++  ++    + +  +  E+REVK+ +    
Sbjct: 422 IVTLQLYRLTNTDITQLQQEAEELLATIAELQKIIQDSTELFKVMKKELREVKKQYQ--- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
                R T  E    +     + ++ +E + VV++  G+++     S   S       KE
Sbjct: 479 ---SERLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYVKRSSLRSYSASNNEEAGMKE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +T D +LL++  G     P   L     +  GE + Q L  L   ++I+T
Sbjct: 536 SDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPDLRWKDVGEHLSQALTTLKIEENILT 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVT 657
              Y     T +LL+++  G     + SE         +   F+ +   E+K+  V+ + 
Sbjct: 596 VLPYKQLSTTQELLILTQAGMIKRTKLSEFTPWRTYKTRPLPFITLKQEEDKVISVMVIE 655

Query: 658 -----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI-CEGLT 710
                   + +V      L +++  +P +  R  GV+  + K+   + V    +  +G T
Sbjct: 656 PQEIATQDIFMVSNRAYGLRYAVTDVPVVGPRAAGVKAMNLKEDDATVVQAILVHTDGDT 715

Query: 711 -WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +    R   +           R   G +V +
Sbjct: 716 PVVIITQRGAAKRMLAQELPQTSRAQRGIMVLR 748


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/742 (36%), Positives = 438/742 (59%), Gaps = 22/742 (2%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++  S+    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   A FKKS
Sbjct: 5   SLEQQSVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYP I GQGN+G   D  S AA RYTE+
Sbjct: 65  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPDDPKSFAAMRYTES 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++ ++L+L  +++  V++ D ++    EP   P++ PNLL NGTSGIAVGM T++P H
Sbjct: 125 KLSRYSDLLLSEINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A +AL+D P + ++ +++ I  PD+PT   IV S   + + Y  G G  ++RA
Sbjct: 185 NLTEVVSACIALLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
            +  E        IV+  +P+Q   +++I +IA  I AK++PL++DIRDES  +   RIV
Sbjct: 245 IYQKE-----KGNIVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++  +D D+LM  +F  +++E  + +NMNV+ +   P V+ L  +LKEWL++R +V+
Sbjct: 300 IIPRSNRVDVDVLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYRMKVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             R ++R+  I  R+ ILKGLLIA+LNIDE+IAIIR  DKPK V++  F L++ QV+AIL
Sbjct: 360 INRLTYRLDKILVRLHILKGLLIAFLNIDEVIAIIREHDKPKLVLIDHFKLSDIQVEAIL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L KLEE +I++E  +L  EKEK+  LL+S  +    I  E++ + + F      
Sbjct: 420 ELKLRYLAKLEEIKIQAEQQDLALEKEKLKLLLSSDLRLKILIKKELKAIIKDFGDE--- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+         +A  +  +   E ITVV+S +GW+RS K +S+D + L++K GDS  
Sbjct: 477 --RRSNIKRNVNTAQAFSEDDLAPAENITVVLSEKGWVRSAKGYSIDPNTLNYKAGDSYL 534

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            ++   +   ++ + + G++Y+L A +L S RG GE +   +        V   +  ++ 
Sbjct: 535 TSVKGKSNKPVIFIDSTGRSYSLLANSLSSARGQGEPLTGKLSPPSEARFVDVIMGKASQ 594

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGENRK 669
            +L+ S+ G  FI    +++++ + GK F  +S      ++  V  +    +A+V    +
Sbjct: 595 NILLASNIGYGFIATIGDLLSSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGR 654

Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWIDSAGRSYNRSE 723
           LLIF I ++P +S+GKG +L       +         IC  +      + +  R +    
Sbjct: 655 LLIFPISELPILSKGKGSKLIQISTKDVKSRQEFVMNICILLETQHLKVIAGKRHFTIKF 714

Query: 724 NDLLGWLGKRGGVGSLVPKGFP 745
            DL  ++  R   G L+PKG+ 
Sbjct: 715 QDLSNYISSRARCGKLLPKGYQ 736


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/743 (29%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY + K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR  +     K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+++     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETFVSVTRGGYLKRTSPRSFNSSTVDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L   R    GE + Q + +   N++++ A 
Sbjct: 535 RLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVLYAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D         ++  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LVDNFDEGTYFALTKLGQIKRVERKEFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKNDVLAAAFIANTDSLYILTQ--RGA 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+ ++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKAIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ ++ A 
Sbjct: 535 ELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   +      +  G     E  E     T K K+    K+ + ++ +  +  +  D 
Sbjct: 595 IVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + KD            +    +   G S 
Sbjct: 655 VMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFILTQRG-SL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   +L+     R   G  V +
Sbjct: 714 KRMATELIP-ATSRANRGLQVLR 735



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              +++++ G+        V         + A++ K+ D +  A  A+T D   +L+  G
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANT-DSFFILTQRG 711

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +    + +       +Q+L +L  
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELKS 739


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 222/765 (29%), Positives = 374/765 (48%), Gaps = 63/765 (8%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   + +  V++   +   Y+ YA+S I  RA+PD RDG KP  RRI+ AM+++ L   +
Sbjct: 7   TPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNS 66

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              K A+I G+  G  HPHGD S+Y +LVRLAQ +  R  LI  QGNFG++ G   AA R
Sbjct: 67  GRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMR 126

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ VA  +L  +  D VD+  TY++ + EPVV PS+FPNLL NG+SGIAVGMATS
Sbjct: 127 YTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATS 186

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A + L+++PE SI++L+E + GPDFPTGGII   R  I + Y  GR   
Sbjct: 187 IPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIIC-GRYGIRQGYLTGRSTL 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
            +RA+       + +  I VTEIPY   + R+ EK+ +L+   +I  +  I D +     
Sbjct: 246 TLRAKTRFLTE-KNTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTP 304

Query: 310 ---RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                +     R  D ++++  +F  S +++ F + +  LS G  P+ M +  ++ E++ 
Sbjct: 305 AWQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLALS-GNRPKTMNIKELIGEFIR 363

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV------- 416
           HR  V+ R++ F++    +R   ++GLLIA LNIDE+I  IR+     + K         
Sbjct: 364 HRITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERLQAILVP 423

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                +   +SL+ NQ +AI++++L SL  LE+ +++ E   L+
Sbjct: 424 SAMVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLI 483

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +      LL+        I  E++++ + +  +     RRT   E   +D    ++ +I
Sbjct: 484 EDIFGYLHLLSDEAHIRAVIREEMQKLGDKYGNA-----RRTEISEDELSD--VDKEDLI 536

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLS 567
            +E + V +S RG+I+ L  H+                 + D+++    + T D +L  +
Sbjct: 537 PEEMMVVTLSQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFT 596

Query: 568 TDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSKGN 622
             G+ +     +L   S    G A+  L+ L   + +   V    ++    L++ +  G 
Sbjct: 597 DKGRVFWQKVYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEENRYLVMATRAGI 656

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681
                       T+ G   + +   + +     ++  + + +   N   + FS      M
Sbjct: 657 VKKTSLDAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAM 716

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSEN 724
            R   GVR    +     +VI   + +  +T +    + Y +   
Sbjct: 717 GRNTSGVRGIKLRKD--DEVIGMVVADPAMTLLTMCEKGYGKRTP 759



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 77/237 (32%), Gaps = 40/237 (16%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------LKSH 536
           + + + T  G        +   D     + +  +E I +  +N   IR        +  +
Sbjct: 663 DAYKRPTKGG---IIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAMGRN 719

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +  +  +  ++ D +   + A     +L +   G     P G + S     + I     +
Sbjct: 720 TSGVRGIKLRKDDEVIGMVVADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGV 779

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSK----------------GNAFIVEESEIIANTRKGKT 640
             +++I  A   ++  +                       G        +I    R GK 
Sbjct: 780 VADEEIAEALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVR----DIRVIPRNGKV 835

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
                    +K++    GDHV +V    K+      +I E+ R  +GVR+    +G 
Sbjct: 836 ---------VKILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGD 883



 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G  ++ +  +  N  +V          +L+V++ G    V  +EI    R   G   +K+
Sbjct: 820 GLGVRDIRVIPRNGKVVKILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKL 879

Query: 645 SSEEKMKLVVKVTGD 659
           +  +++  + ++  D
Sbjct: 880 TEGDRVASMARIPAD 894


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
 gi|332204008|gb|EGJ18075.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA47368]
          Length = 811

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/734 (29%), Positives = 385/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 390/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIVPMLTSYIAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ I+ A 
Sbjct: 535 ELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYILYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   +      +  G     E  E     T K K+    K+ + ++ +  +  +  D 
Sbjct: 595 IVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + KD            +    +   G S 
Sbjct: 655 VMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDNDFVASAFVANTDSFFILTQRG-SL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   +L+     R   G  V +
Sbjct: 714 KRMATELIP-ATSRANRGLQVLR 735


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/764 (31%), Positives = 389/764 (50%), Gaps = 49/764 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 80  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 139

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 140 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 199

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE ++L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 200 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 259

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGGII+ +   ++++YR GRG   V
Sbjct: 260 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNL-GVLDAYRTGRGRVVV 318

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 319 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 378

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  
Sbjct: 379 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCS 437

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 438 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 497

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 498 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 557

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RR+   +    D   +   +I  E + + +S +G+++ +K          ++ 
Sbjct: 558 SP-----RRSMLEDSDSGDLEDI--DVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIG 610

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
            S    +  D++   L  H  D +L  S  G  Y+  A  +   S    G  +  ++ ++
Sbjct: 611 KSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMS 670

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + +      +     LL+++  G    V           G   ++++S +++K V 
Sbjct: 671 EGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVR 730

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK------------------- 693
             + D  VA+  +N  + + + D +  +SR  KGV     K                   
Sbjct: 731 CCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDM 790

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +    D    K   G   +      Y +          +   VG
Sbjct: 791 EEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVG 834



 Score = 45.5 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 30/208 (14%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G I+ +         S  + A+    GD LK     
Sbjct: 673 ERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCC 732

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
            + D + + S +G    L   + +            + L +   I +  +  ++ +    
Sbjct: 733 SSDDLVAMASQNGMV-ALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDME 791

Query: 614 ----------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVK 655
                           LL V   G    V  S    +   R G +  KV S     LVV 
Sbjct: 792 EKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSPFLVV- 850

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683
            + + V +V ++  +    +  I   SR
Sbjct: 851 FSDEQVVLVSQSGTVNRIKVRDISIQSR 878


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/758 (36%), Positives = 420/758 (55%), Gaps = 35/758 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + N+N   EEN  AV +    EE YLAYA+S +K RA+P + DG KPV RRI+ A
Sbjct: 1   MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFA 55

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL  G    KSAR+VG V+G  HPHGD S Y++ VRLAQ F  RYPLI GQGNFG+
Sbjct: 56  MKEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            DGD AAA RYTE R++ +A+L+L  +D   VDF+  Y+    EPV+ P++ P +L NG 
Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT +  HN++EI  A L ++DNP+ +    ++Y+ GPDFP GG ++     I+
Sbjct: 176 SGIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADIL 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------ 288
            +Y  GRG  R+RARW VE + RG W I++ E+P+ V    + ++I              
Sbjct: 236 STYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKT 295

Query: 289 ------LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                 L+    + +++ ++ E  +DVR+++ PK   +  D LM  + + + ME   P+N
Sbjct: 296 IDQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M ++     P    +  ILKEW+A R  V+ RR  F +  I++R+ IL+G +IA+L+IDE
Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I +IRN D+PK  +++ F L+E Q + IL +RLR L +LE ++I+ EL +L  E + + 
Sbjct: 416 VIRVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           ++L S  +     A EI++  E +      G  R T  E     +   Q+A +  EP+T+
Sbjct: 476 NILGSDNKLRKLTAKEIKQDAEKY------GDNRRTLIEPVERVQGG-QKAFVVDEPVTI 528

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +IS  GWIR+ + H V+  ++ +K GD     +   T   I+LL T+G+ Y   A  +  
Sbjct: 529 LISKNGWIRARQGHGVERESIVWKSGDGEFAVIETRTVLPIVLLDTNGRCYAFDASTVPG 588

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           G+G G  +  +I++ +   +  A       + L  +S    F+     ++A  + GK F+
Sbjct: 589 GKGDGIPLSSIIEVQNGAKLAHALSGKDDDRYLFATSNSYGFVAPLKGLVARPKAGKAFM 648

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDV 700
           K      +   +K+    HVAV     K L+F I ++ E  + GKGVR+    D   + +
Sbjct: 649 KPEDGALILPPIKLDERTHVAVTSSENKFLVFPISEVNEYPNGGKGVRMMDIPDK--ASL 706

Query: 701 ICFKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVG 737
              ++ +GL+  +   G+        L  +L KR   G
Sbjct: 707 SRIELSDGLSANVIIRGKVKVLEGEALSKFLLKRARKG 744


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 267/795 (33%), Positives = 420/795 (52%), Gaps = 74/795 (9%)

Query: 6   ISNSNTLVE-----ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           + +S   ++     +    ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++
Sbjct: 1   MDDSQPPLDLQGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYS 60

Query: 61  MSEMGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           MS MGL FG           KSAR+VG+V+G+ HPH DQ+ YD+LVR+AQ F QRYPL  
Sbjct: 61  MSRMGLGFGGANGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLAD 120

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           GQGNFG+ DGD AAA RYTEAR+ ++  L+L  +DE  VDF   Y+    EP + P++ P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLP 180

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGII 232
             L NG SGIAVG+AT IPSHN++EI +A +ALI +  ++S E+LL+ + GPD+P G  I
Sbjct: 181 FTLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQI 240

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---- 288
           +     I ++YR GRG  +VRARW +E++ RG W +VV E+P  V   +++E+I E    
Sbjct: 241 ISGPADIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNP 300

Query: 289 --------------LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFML 332
                          + A  + +L+ +RDES++D  VR+V  PK   +  D  + ++   
Sbjct: 301 KVKAGKKALSADQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQ 360

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + +ET  P+N+ ++ +   P    L  +L EW+A R   + +RS FR+  +  R+ IL+G
Sbjct: 361 TSLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEG 420

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             +  LNIDE+IAIIR  + PK  +++RF+L+E Q + IL +RLR L +LE  +I+ +LD
Sbjct: 421 RQLVLLNIDEVIAIIRAAEDPKAALIARFNLSEVQAEDILEIRLRQLARLEGIKIQQQLD 480

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  E++K++ +L S       +  EI    + F         R T  +  +   A   +
Sbjct: 481 ELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDP------RRTLIQAEKRAVA---E 531

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHAHTTDRIL 564
             +  EP+TV++S +GW+R+ K  + + +A          FK GD+L  A    + D +L
Sbjct: 532 VKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLL 591

Query: 565 LLST----DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           +  +      + YT+P  +L   RG G+ +  LI+L+    +   F       +L+ ++ 
Sbjct: 592 VFGSAKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTG 651

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKL 670
           G  FI     +++  R GK F+ V   E++     V G           HVA      ++
Sbjct: 652 GYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRI 711

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F I ++  + + G+G+ L        ++    +        I+  GR     +  L  
Sbjct: 712 LTFDIAELKSLPKGGRGLTLIDLDAKDTLAGAAAYTRS---VKIEGIGRGGKERDETLEI 768

Query: 729 W-----LGKRGGVGS 738
                  G R   G 
Sbjct: 769 RTLNNARGSRARKGK 783


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR++++  R
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYIKRTSPRSYNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ ++ A 
Sbjct: 535 ELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDEYVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKL-VVKVTGDH 660
           + D          +  G     E  E     T K K     K+  ++ + + +  +  D 
Sbjct: 595 IVDEFGPQTYFAATKYGQIKRFERKEFTPWRTYKSKAVKYAKLKKDDDIVVTIAPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V V+  N   L F+ID++P +  +  GV+  + KD     V+   I    ++     R  
Sbjct: 655 VMVITHNGYALHFNIDEVPVVGAKAAGVKSINLKDD--DFVVSAFIANTESFFILTQRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     L     R   G  V +
Sbjct: 713 LKRMATELIPAASRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           D   +           +VI++ G+        V         + +++ K+ D +  A  A
Sbjct: 640 DDDIVVTIAPIALDDVMVITHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVSAFIA 699

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           +T +   +L+  G    +    + +       +Q+L +L  
Sbjct: 700 NT-ESFFILTQRGSLKRMATELIPAASRANRGLQVLRELKS 739


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 219/734 (29%), Positives = 390/734 (53%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A++ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTGGI ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSTLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ +T G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E     T K K+    K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFAATRFGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K   +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKADDVLQSAFICNTSSFYLLTQ--RGSLKRVSIDEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   GS V +
Sbjct: 711 PATSRAKRGSQVLR 724


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/738 (32%), Positives = 393/738 (53%), Gaps = 25/738 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++++++   +++ YL+Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL      
Sbjct: 1   MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVGEV+GK HPHGD SVYD++VR+AQ F QRY LI G GNFG+IDGDS AA RYT
Sbjct: 61  KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+T++AE I+  + +D VDF D ++    EP + P+K PNLL NG SGIAVGM+TSIP
Sbjct: 121 EARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P   +E +++YI GPDFPTG  IV     I ++Y+ G G   +
Sbjct: 181 PHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKITL 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR  +E+ GR    I++ EIPY + K +L+E IAELI   +I  + D+RDES ++   +
Sbjct: 240 RARTQIEKKGRKKQ-IIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +       DPD+++  ++  + ++T + +NM  L  G+ P+VM L  ILK ++  RR+V+
Sbjct: 299 VVELKSGADPDIILNQLYKFTSLQTNYRINMLAL-DGKQPRVMDLITILKNFINFRRQVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RR+ +++     R  +L+GL+ A   +D +I+IIR+     + +  +  +  +TE Q +
Sbjct: 358 TRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEKQAE 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL +RL+ L  +EE ++  E   L  + +    +LN+  +    +  E+ ++K  ++  
Sbjct: 418 AILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKYAD- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                +R T            +  +I+KE + +  S R  I+   S     +     + D
Sbjct: 477 -----KRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAG----KND 527

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
            +   +   T D +L  +  G  YTLP   +    G   G+ I+  + +  ++ IV    
Sbjct: 528 YIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVIC 587

Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
            +       + + + +G        E    T      +K++  +++  V    G+   ++
Sbjct: 588 LNEETKEKYITIATKQGMVKKTIGGEYQT-TYSRIKAIKLNKGDEVVGVEITDGNQEILL 646

Query: 665 -GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-ICEGLTWIDSAGRSYNRS 722
             +  K + F  D + +  R   +     K     +V+ F  +    + +  +     + 
Sbjct: 647 GTKKAKTIRFEEDSVSDTGRNT-IGSIGIKLAKGDEVVSFNLVNNNTSVVSISKTGRGKR 705

Query: 723 ENDLLGWLGKRGGVGSLV 740
                     R G G   
Sbjct: 706 SPIEEYNPQNRNGKGLKT 723


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/827 (31%), Positives = 409/827 (49%), Gaps = 89/827 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++    L+   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRII+AM E+G
Sbjct: 1   MAKKLNLLSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     F+K AR+VG+V+GK HPHGDQ+VYD++VR+ Q F  RYPL+ G GNFG+ID D 
Sbjct: 61  LTPDRPFRKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTE+R+  +  E +L  + E  VDF + ++    EP V P++ P LL NG+SGIA
Sbjct: 121 AAAMRYTESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN+ E+ +  +ALIDNP IS +KL E I GPDFPTGG IV S + I+++Y 
Sbjct: 181 VGMATNVPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIV-STDGIIDTYT 239

Query: 245 LGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V  G        IVVTE+P+QV K+  IEK A+L+ A +I  + 
Sbjct: 240 KGRGSIPMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIA 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES      V+    R  DP +++  ++  +D+ ++F   M  L  G+ PQ + L  
Sbjct: 300 DLRDESDRSGIRVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQ-PQQLSLRT 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           +L+E+L  R E L R  +  +Q    R  I+ GLL A   +D +I I+RN    +  K  
Sbjct: 359 LLQEFLNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 L+ENQ DAIL + +R L  LE+ +++ E + L+ + +++++LL    Q    + 
Sbjct: 419 FQESLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ------------------------ 512
            E+R +K  ++       RRT   +  +   A                            
Sbjct: 479 KELRTLKRKYNDP-----RRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRV 533

Query: 513 -----------------AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE-------G 548
                            A    E + +  S+RG++R + +   +   +  K         
Sbjct: 534 IKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSE 593

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQLLIDLNHNQ 600
           D     + A T   ++LL+  GKAY L   N+ S            G  +  L+  +  +
Sbjct: 594 DFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATK 653

Query: 601 DIVTAF-----------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +I  A                   L++++  G    +  S++     +G T +K+  +++
Sbjct: 654 EITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDE 713

Query: 650 MKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           ++ V    TG+ V +     +LL   ID   +P M R   G +    +      V C  +
Sbjct: 714 LRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRK-QEELVGCVTL 772

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G   +  +  SY +        +  RGG+G  V + F R    L+
Sbjct: 773 DIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQ-FTRQDDILA 818



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 63/168 (37%), Gaps = 17/168 (10%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++++  G I+ L         +  ++ +  KE D L+      T ++++L ++ G
Sbjct: 674 ENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVSLGKTGEQVVLATSGG 733

Query: 571 KAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +   L   +    L+     G        L   +++V     D    LL+VS       +
Sbjct: 734 RLLRLQIDDEKLPLMGRAAQG---SQATRLRKQEELVGCVTLDIGSNLLLVSQHSYGKQI 790

Query: 627 EESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGDHVA--VVGENRKL 670
             + +    R G      + + ++ +   +  +  +V   V+  + ++
Sbjct: 791 PVTALRVANRGGIGQNVFQFTRQDDILAGIVASSSNVLVQVLTTDGRV 838


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/745 (28%), Positives = 393/745 (52%), Gaps = 26/745 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDERTMYNLMKRELREVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+++     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRTSPRSFNSSTVDEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L   R    GE + Q + +   N++++   
Sbjct: 535 RLIFISSAKTTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D         V+  G    VE  +         K   F K+   ++++  +  +  D 
Sbjct: 595 LVDNFDEGTYFAVTKLGQIKRVERKQFSPWRTYKSKSVKFAKLKNEDDQIITLSPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         +    +    R  
Sbjct: 655 VMLVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKDDVLAAAFIVNTDSFYILTQ--RGA 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744
            +        +  R   G  V +  
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLRDL 737


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/772 (35%), Positives = 416/772 (53%), Gaps = 63/772 (8%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-------AF 72
           ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG          
Sbjct: 24  LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARIVG+V+G+ HPHGD SVYD+ VR+AQ F QRYPLI G GNFG+ DGD AAA RYT
Sbjct: 84  VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ ++  L+L  +DE  VDF   Y+    EP   P++ P  L NG SGIAVG+AT IP
Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN++E+ +A +ALI +P++S   L   I GPD+P GG I+ S E I E+YR GRG  + 
Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKR 294
           RARW +E++ RG W +V+TE+P  V   R++E+I EL                  + A  
Sbjct: 264 RARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATL 323

Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +L+ +RDES++D  VR+V  PK   +    L+ ++   + +ET  P+N+ ++ +   P
Sbjct: 324 LSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRP 383

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               L  +L EW+A R++ + RRS  R+  +  R+ IL+G  +  LNIDE+IAIIR  D+
Sbjct: 384 TQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADE 443

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           PK  +++RF L++ Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L S     
Sbjct: 444 PKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSALR 503

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +  EI    + F+        R T  +  +     + +  +  EP+TVV+S +GW+R+
Sbjct: 504 RLMIKEIEADAKTFADP------RRTLIQAEKKA---VLEVKVVDEPVTVVVSQKGWVRA 554

Query: 533 LKSHSVDLSA-------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            K  + + +A         FK GD+L       T D +L   ++G+ Y++    L   RG
Sbjct: 555 QKGWASERAANGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARG 614

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            G+ +  L++L     ++  F   +   LL+ SS G  F+     + +  + GK F+  +
Sbjct: 615 DGQPMTSLLELEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCN 674

Query: 646 SEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           + E +     V G           HVA      ++L F I Q+  M+  G+G+ L   +D
Sbjct: 675 AGEILCRPSPVAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLED 734

Query: 695 -GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVGSLV 740
              ++    +        I+  GR     +  L           RG  G + 
Sbjct: 735 KDRLAGACAYTRS---VKIEGLGRGGKPRDETLEIRSLNNARALRGRKGKVA 783


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 211/755 (27%), Positives = 403/755 (53%), Gaps = 27/755 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ + L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F  +++KS
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++++R++Q +    PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L  +++D V     +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P++ ++K++E++ GPDFPTGGI ++ +  I ++Y  G+G   VR++
Sbjct: 183 LGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGGI-IQGKGEIRKAYEKGKGRIVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   ++VTEIP+++ K+ L++KI ++ +  ++P + ++RDES  +   +   
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  L++  +F  +D++  +  NM  +     P    +  +L+ ++ HR +V+ +R
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNM-TPVQTGVLQMLRSYVKHREDVIIKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F +   ++R+ +++GL+     +DE++A IR   N+   K  +   F  TE Q +AI+
Sbjct: 361 SQFDLNKAEKRLHLVEGLIRMVSILDEVVATIRASENKADAKENIKVSFGFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  +  ++ +++N  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDERTLFNLMKRELREVKKKFA----- 475

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
            R R +  +            +I  E   V ++  G+I+     S   SAL     ++ D
Sbjct: 476 -RPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTSPRSFASSALEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L  +  +  GE + Q L + + ++ ++   
Sbjct: 535 ELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSSDEKVIYVQ 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
           + D  +   L+VV+  G    +E        T + K+  + K+   ++++ L+  V    
Sbjct: 595 IVDAFAGENLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEVVLISPVQFTD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ EN   L F++D +P +  R  GV+  + K+        F      +W     R++
Sbjct: 655 LMLISENGYALRFNLDDVPVLGARAAGVKAMNLKNDDKIKAAFF--VNSNSWYLLTQRAF 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            +           R   G  V +    +  K  ++
Sbjct: 713 IKRVKTEDIPATSRANRGLQVLRTLKTNNHKVFAA 747


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/767 (35%), Positives = 411/767 (53%), Gaps = 52/767 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++SNTL+        L    E  YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL
Sbjct: 10  TDSNTLM--------LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             GA   KSAR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD A
Sbjct: 62  TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +AEL+L  +++  VDF   Y+    EP+  P++ P +L NG SGIAVG
Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IPSHN+ E+ +AA+AL+  P +    L++YI  PDF  GG I+   + +   Y  G
Sbjct: 182 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------- 289
           +G  RVRAR+ +E++ RG W ++VTE+P     ++++ +I E                  
Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRL 301

Query: 290 -IIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
                 + L++ +RDES     VR+V  PK+  +D D  + ++   + +E    +N+ ++
Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  IL+EWL  R   + RR  FR+  +++R+ IL+G L  +L+IDE+I +
Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  D PK  +++ F LTE Q + IL +RLR L +LE ++++ EL+ L  E+ +++  L 
Sbjct: 422 IRESDDPKADLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLG 481

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   I  E++   + F  +      R T  E +     T        EPIT+++S 
Sbjct: 482 DENEKRKLIIKEMQADMKQFGDA------RRTLVEEAGRAVLT---QTAADEPITLILSE 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIAL---HAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +GWIRS   H++DLS   FKEGD LK  L   H  T      +   G+ Y++ A  +  G
Sbjct: 533 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGPHCFTRRHPRFI--RGRTYSIDAAEIPGG 590

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           RG G  +  LI+L +    V           L+ SS G  FI +  +++   + GK  + 
Sbjct: 591 RGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMT 650

Query: 644 VSSEEKMKLVVKVTGDH-------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696
             S E +   V V           +       + L F I ++  M++GKG+++    + G
Sbjct: 651 ADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGL-NAG 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741
            S        E    I+S GR     ++ L   L   KRG  G L+P
Sbjct: 710 ESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 223/755 (29%), Positives = 389/755 (51%), Gaps = 32/755 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F  AF+
Sbjct: 5   QPKIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD AAA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +LQ +D+  VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L L+++P+ ++E L++++ GPDFPTGGI ++    I ++Y  GRG   VR
Sbjct: 185 HNLSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGGI-IQGLAGIKQAYETGRGRIVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +  +      I V+EIPY+V K++L++KI E+ I K+I  + ++RDES      V+
Sbjct: 244 SRTKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++ + ++  +   +D++  +  NM  +   R   V  L  IL  +L H+R+V+ 
Sbjct: 304 IELKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQRPEHV-GLKTILTAYLEHQRDVVT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F +Q    R  I++GL+ A   +D++I  IR   ++   K  +VS+F  +E Q +A
Sbjct: 363 RRTQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQFDFSEIQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ ++L  L   +  Q++ E   L         +L   K+    +  E++ V++ +    
Sbjct: 423 IVTMQLYRLTNTDVTQLEKESAELAKAIATYQLILAEPKELDKVLRRELKAVQKAY---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R T  +    +     + +I +E + V+IS+ G+I+     S   S       K+
Sbjct: 479 --PTSRLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIKRTSLRSYSASEPDDNGLKD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605
            D         T D +++ +  G     P   +     +  GE I   I L  N+ I   
Sbjct: 537 EDYPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADAKWKDTGEHISQTIGLAENERITWV 596

Query: 606 FVYD---STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVV---- 654
           + ++   +T K LV +S G       ++        TR    F+K+ S++   + V    
Sbjct: 597 YSFENLKATGKFLVATSDGYIKQTAFADYTPGRTYKTRAS-QFIKMKSDDATVVTVEYLP 655

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + ++ ++   L + + ++P +  +  GV+    +D  I         + +  I 
Sbjct: 656 AAPTGTLILITQHGYGLRYDLSEVPTIGAKAVGVKSMDLRDDAIVRATIAADDDLIAMIT 715

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             G        DL   +  R   G  V +   ++ 
Sbjct: 716 QRGSFKKMKVADL--PVTSRARRGVQVLREL-KNN 747


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
 gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana]
          Length = 950

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/764 (31%), Positives = 389/764 (50%), Gaps = 49/764 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y++YALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE ++L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGGII+ +   ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNL-GVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R  I++G+++   N+DE+I +I              S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  +   E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RR+   +    D   +   +I  E + + +S +G+++ +K          ++ 
Sbjct: 576 SP-----RRSMLEDSDSGDLEDI--DVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIG 628

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
            S    +  D++   L  H  D +L  S  G  Y+  A  +   S    G  +  ++ ++
Sbjct: 629 KSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMS 688

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + +      +     LL+++  G    V           G   ++++S +++K V 
Sbjct: 689 EGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVR 748

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK------------------- 693
             + D  VA+  +N  + + + D +  +SR  KGV     K                   
Sbjct: 749 CCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDM 808

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +    D    K   G   +      Y +          +   VG
Sbjct: 809 EEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVG 852



 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 40/247 (16%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G I+ +         S  + A+    GD LK     
Sbjct: 691 ERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCC 750

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
            + D + + S +G    L   + +            + L +   I +  +  ++ +    
Sbjct: 751 SSDDLVAMASQNGMV-ALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDME 809

Query: 614 ----------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVK 655
                           LL V   G    V  S    +   R G +  K + ++++  V  
Sbjct: 810 EKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFV 869

Query: 656 V---------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFK 704
           V         + + V +V ++  +    +  I   S R +GV L      G I       
Sbjct: 870 VGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLIS 929

Query: 705 ICEGLTW 711
             +    
Sbjct: 930 AADEEET 936


>gi|332202711|gb|EGJ16780.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41317]
          Length = 811

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 214/734 (29%), Positives = 385/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ + A+ 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDVAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L     A T
Sbjct: 473 TAKAIEIDIASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ ++ G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E         K   + K+  + +++  V  +  D V +V +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ--RGSLKRVSIEEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 LATSRAKRGLQVLR 724


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/759 (32%), Positives = 415/759 (54%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 12  KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYTE
Sbjct: 72  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM ++AE +++ +D   VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 132 ARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++++  +S+  L+  + GPDFPT   I+ + ES+V++Y  G+G   +R
Sbjct: 192 HNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYN-ESLVKAYTTGKGSVVIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   ++
Sbjct: 251 SRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIRIV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP ++M  ++  +++   F +N   L  G +P+ + L  ++ E++ HR+E++ 
Sbjct: 311 LEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNG-IPKQLNLKELISEFIDHRKEIVR 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL I+  +ID +I IIR        K  ++  F+L+E Q ++
Sbjct: 370 RRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKEFNLSEIQANS 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +++ E   +L   +  + +L S ++  N +  EI  +   F    
Sbjct: 430 ILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYEDILVSPERVVNIVREEIINLSLKF---- 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    ++++E + V+++ +G+I+ +      L  +  K    
Sbjct: 486 --GDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGS 543

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               + D + IAL  +T D +L++S +GK Y + A  +   S    G+ I+ LI+L   +
Sbjct: 544 FDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSKGQNIRELINLGETE 603

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+     +       LL+ ++ G    +E         +G   +K+  ++ +     V+
Sbjct: 604 EILAIKNCNELSLDNYLLITTANGKIARIETEGFKTVKSRGVIVIKLDDKDFVTSAEIVS 663

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D +  + +      F+ + I    RG  GV     ++G +  +      +G   +  +
Sbjct: 664 KNDKIICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDML-IKALSAKQGSHLLIVS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
              Y +          KRG  G    K    ++G  + +
Sbjct: 723 ENGYGKRLEISRVTELKRGATGYTCYKKSDEKAGAVVDA 761


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/743 (29%), Positives = 385/743 (51%), Gaps = 23/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E    + L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G      F+K
Sbjct: 5   ERYLDLPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD+++R++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L+ +D++ VD+   +++ + EPVV P+ FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKISAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           ++ EI +  +  ++ P+ ++E L+  I GPDFPTGGI V+  + I ++YR G+G   VRA
Sbjct: 185 HLSEIIDGVIMQMEKPQTTLEDLMTVIKGPDFPTGGI-VQGIDGIKQAYRTGKGKVIVRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VEE+  G   I +TEIPY+V K+ L++K+ EL   K++  + ++RD++      ++ 
Sbjct: 244 KTEVEELRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P++M L  +++ ++ H++EV  R
Sbjct: 304 ELKKEADAKAILHYLFKNTDLQVTYNFNMVAIHNK-TPKLMGLQPLIQAYIDHQKEVATR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R  I+KGL+ A   +DE+IA IR+       K  ++  +  +E Q +AI
Sbjct: 363 RAQYDLKKAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLIREYDFSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E   L     +++++L S K+    I   ++ VK+ F+    
Sbjct: 423 VTLQLYRLTNTDITTLEEEAAELERRIHELEAILGSEKKLITVIKKGLQSVKKQFADP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEG 548
               R T  +    +       ++  E + V ++  G+++     S   S       KEG
Sbjct: 481 ----RRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYVKRTSIRSYTASNGEPPGMKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L      +TTD +LL +  G    +P  +L     + +G+ I  L+ ++ +  I+ A 
Sbjct: 537 DRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPDIRWKDNGQHIANLVSVDRDDCILRAM 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +  +  LL ++  G A   + S   A    K    LK+ +++++  V++  G   +
Sbjct: 597 PVKEFSESESLLFITKNGMAKRSQLSLYQAQRFSKPLMALKLKADDEVVSVMRTDGKKEL 656

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSY 719
            +       L F  ++I  +  R  GV+  + KD   + D   F+  + +       R  
Sbjct: 657 FIATHLGYGLWFDEEEISLVGQRAAGVKAINLKDDDKVVDAFTFEPEDKVDLFIVTHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G ++ +
Sbjct: 717 VKKMPLSEFDKSSRAKRGLVMLR 739



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 23/188 (12%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLK 552
            +        +      +    + I+  G  +  +              AL  K  D + 
Sbjct: 586 VDRDDCILRAMPVKEFSESESLLFITKNGMAKRSQLSLYQAQRFSKPLMALKLKADDEVV 645

Query: 553 IALHAHTTDRILLLSTDGKAYTL----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                 T  +  L       Y L       +L+  R  G      I+L  +  +V AF +
Sbjct: 646 S--VMRTDGKKELFIATHLGYGLWFDEEEISLVGQRAAG---VKAINLKDDDKVVDAFTF 700

Query: 609 DSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVA 662
           +   K  L +V+ +G    +  SE   ++R  +  + +        ++    +V+ + + 
Sbjct: 701 EPEDKVDLFIVTHRGAVKKMPLSEFDKSSRAKRGLVMLRELKSNAHRVIGCRRVSKETLI 760

Query: 663 -VVGENRK 669
            ++ E  +
Sbjct: 761 EILTEKGQ 768


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 250/618 (40%), Positives = 379/618 (61%), Gaps = 14/618 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1   MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           LD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ AE++L  V +  VD+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D P+ +IE+L E+I GPD+PT   IV  R  I++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + VE+       IVVT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           S  +   RIV+ P++  +D D LM+ +F  +D+E+ + +N+N++ +   PQ+  L  IL 
Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNLRTILV 355

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
           EWL  R   + RR   R+  +++R+ +L GLL A+LN+DE+I IIR ED PK  +++RF 
Sbjct: 356 EWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQALIARFG 415

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q D IL  RLR L +LEE +I+ E D LL E+ K+ +LL S  +    +  E+ + 
Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        RR+   E +   KA  +  ++  EP+TVV+S +GWIR  K H +D + 
Sbjct: 476 AETYGD-----DRRSPIVERAE-AKALSENELMPTEPVTVVLSEKGWIRCAKGHDIDATG 529

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L +K GD  K A    +    +L+ + G++Y+L A +L S RG GE +   +        
Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATF 589

Query: 603 VTAFVYDSTCKLLVVSSK 620
               + +     +V S  
Sbjct: 590 DCVLLPEDDALYVVASDA 607


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 225/743 (30%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIIPMLTSYVAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKISYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L        +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLSNTDIVALENEEAELRERITMFKAIIGDERTMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSFNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ ++ A 
Sbjct: 535 ELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDESVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSEEKMKL-VVKVTGDH 660
           + D          +  G     E  EI    T K K     K+ +++ M + +  +  D 
Sbjct: 595 IVDEFGPQTYFAATKLGQIKRFERKEISPWRTYKSKAVKYAKLKNDDDMIVTISPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V VV  N   L F+ID++P +  +  GV+  + KD            E    +   G S 
Sbjct: 655 VMVVTHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVSTFIANTESFFILTQRG-SL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   DL+     R   G  V +
Sbjct: 714 KRMSTDLIP-ATNRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIAL 555
           + D   +           +V+++ G+        V         + +++ K+ D +    
Sbjct: 638 KNDDDMIVTISPIALDDVMVVTHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVSTF 697

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKL 614
            A+T +   +L+  G    +    + +       +Q+L +L      +  A   +++  +
Sbjct: 698 IANT-ESFFILTQRGSLKRMSTDLIPATNRANRGLQVLRELKSKPHRVFMAGAVNASNDV 756

Query: 615 ----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
               L  S   ++  +E  E+ +N  KG  +  +  +
Sbjct: 757 QNIDLFSSEPLDSDKIETLEVYSN--KGNIYNAILED 791


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 204/681 (29%), Positives = 341/681 (50%), Gaps = 37/681 (5%)

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           +RLAQP+  RYPL+ G GNFG+   D  AA RYTE+R+  +A  +L+ +D+D VDF   Y
Sbjct: 1   MRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNY 60

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI---- 214
           +    EP + PS+FPNLL NG  GIAVGMAT+IP HN++E+ +     + +P+ S     
Sbjct: 61  DGRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELL 120

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           E LLE I GPDFPT G+IV  R+ I ++YR GRG  R+RA   VEE  +G   +VVTE+P
Sbjct: 121 EALLELIKGPDFPTAGLIV-GRQGIEDAYRTGRGSIRMRAVVQVEE-NKGRTQLVVTELP 178

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           YQV    L EKIAEL+   RI  + DIRDE SA   + ++    R     +++ +++  +
Sbjct: 179 YQVNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHT 238

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++  F +NM  +  G VP+ + LD +++ ++ H+ +V+ RR+ ++++    R+ +L+GL
Sbjct: 239 QLQDTFGVNMLAIVDG-VPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGL 297

Query: 394 LIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           LIA  ++DE+I +IRN    D  +  ++ RFSL+E Q  AIL+++LR L  LE  +I  E
Sbjct: 298 LIALDHLDEVINLIRNAESADAARGQLMDRFSLSEIQAVAILDMQLRRLAALERQKIIDE 357

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              L A+  +++++L S  +Q   I  E+ E+ + F        RRT        +    
Sbjct: 358 AAELRAKIAELEAILASPARQREIIGEELTEIVDRFGDE-----RRTRLV---PFEGDMS 409

Query: 511 QQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E + V ++  G+         RS +     +     +E D ++      T   
Sbjct: 410 VEDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHW 469

Query: 563 ILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  +  G+ Y   A  L        G+ +  ++    ++ I        Y +   L++ 
Sbjct: 470 LLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEVMAIKDYQAAPYLVLA 529

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           + +G       +E  +N   G   + +  ++++     V+ GD + +V    + + F  D
Sbjct: 530 TRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAGDDLLLVSRQAQSIRFHAD 589

Query: 677 Q--IPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
              +  M R   GV    +  D  +  +           + +    Y +  +     +  
Sbjct: 590 DEQLRPMGRATSGVIGMRFDSDDELLAMEVVPPESEANLLVATSGGYAKQTSLGEYPVQG 649

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G L  K     G  + +
Sbjct: 650 RGGKGVLTAKIVSTRGGLVGA 670



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 14/192 (7%)

Query: 519 PITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           P  V+ + RG  +       D +      A++ ++ D L  A      D +LL+S   ++
Sbjct: 524 PYLVLATRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAGDDLLLVSRQAQS 583

Query: 573 YTLPAGN---LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
               A +      GR     I +  D +     +     +S   LLV +S G A      
Sbjct: 584 IRFHADDEQLRPMGRATSGVIGMRFDSDDELLAMEVVPPESEANLLVATSGGYAKQTSLG 643

Query: 630 EIIANTRKGKTFLK---VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           E     R GK  L    VS+   +   + V+  D +  +  N  +L      +    R  
Sbjct: 644 EYPVQGRGGKGVLTAKIVSTRGGLVGALVVSPDDQLYAITSNGGVLRTVARDVRRAQRQT 703

Query: 686 -GVRLQSYKDGG 696
            GVRL   + G 
Sbjct: 704 MGVRLIDLEAGV 715


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/781 (33%), Positives = 413/781 (52%), Gaps = 69/781 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA---- 70
           +    ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG     
Sbjct: 14  DGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGT 73

Query: 71  ---AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                 KSAR+VG+V+G+ HPH DQ+ YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AA
Sbjct: 74  VGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAA 133

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+ ++  L+L  +DE  VDF   Y+    EP + P++ P  L NG SGIAVG+
Sbjct: 134 AMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGL 193

Query: 188 ATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           AT IPSHN++EI +A +ALI +  ++S E+L   + GPD+P G  I+     I ++YR G
Sbjct: 194 ATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISGASDIADAYRTG 253

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------------------ 288
           RG  +VRARW +E++ RG W +VV E+P  V   +++E+I E                  
Sbjct: 254 RGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQT 313

Query: 289 LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            + A  + +L+ +RDES++D  VR+V  PK   +  +  + ++   + +ET  P+N+ ++
Sbjct: 314 QLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTMV 373

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P    L  +L EW+A R   + +RS  R+  +  R+ IL+G  +  LNIDE+IAI
Sbjct: 374 GIDGKPTQKSLRQMLNEWIAFREITVEKRSRHRLNKVLERIHILEGRQLVLLNIDEVIAI 433

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           IR  + PK  +++RF+L+E Q + IL +RLR L +LE  +I+ EL  L  E++K++ +L 
Sbjct: 434 IRAAEDPKAALIARFNLSERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILG 493

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S       +  EI    + F         R T  +  +   A   +  +  EP+TV++S 
Sbjct: 494 SPATLRRLLIKEIEADAKTFEDP------RRTLIQAEKRAVA---EVKVVDEPVTVIVSQ 544

Query: 527 RGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLST----DGKAYT 574
           +GW+R+ K  + + +A          FK GD+L  A    + D +L+  +      + YT
Sbjct: 545 KGWVRAQKGWASEKAAGNGGAAPEYSFKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYT 604

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +P  +L   RG G+ +  LI+L+    +   F       +L+ ++ G  FI     +++ 
Sbjct: 605 VPVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSR 664

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR- 683
            R GK F+ V   E++     V G           HVA      ++L F I ++  + + 
Sbjct: 665 QRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 724

Query: 684 GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-----LGKRGGVG 737
           G+G+ L   +    ++    +        I+  GR     +  L         G R   G
Sbjct: 725 GRGLTLIDLEPKDTLAGAAAYTRS---VKIEGIGRGGKERDETLEIRTLNNARGTRARKG 781

Query: 738 S 738
            
Sbjct: 782 K 782


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 219/743 (29%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +D+D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P   ++KL+ ++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGAI-IQGKDGIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IVVTEIPY+V K+ L++KI ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + +  +L  ++AHR+E++  R
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKEIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +D++IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKVSYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDERTMYNVMKRELREVKKKFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 478 ---RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTSPRSYNASTVEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   ++ ++ A 
Sbjct: 535 ELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDIGEHLSQTITNFATDEYVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   +      +  G     E  E     T K K+    K+ + ++ +  +  +  D 
Sbjct: 595 IVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKSKSVKYAKLKNADDSVVTISPIALDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + KD            +    +   G S 
Sbjct: 655 VMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANTDSFFILTQRG-SL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   +L+     R   G  V +
Sbjct: 714 KRMATELIP-ATSRANRGLQVLR 735



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              +++++ G+        V         + A++ K+ D +  A  A+T D   +L+  G
Sbjct: 653 DDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKDDDFVASAFVANT-DSFFILTQRG 711

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +    + +       +Q+L +L  
Sbjct: 712 SLKRMATELIPATSRANRGLQVLRELKS 739


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 218/734 (29%), Positives = 388/734 (52%), Gaps = 27/734 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +AA+ 
Sbjct: 121 DIEKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++  +E++  G 
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IVVTEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     +  + +L+
Sbjct: 240 EQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  RS F  +  ++
Sbjct: 300 LNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILARSRFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+        R +  E 
Sbjct: 419 DVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP------RLSSLED 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
           +         ++I +E   V ++  G+I+     S   S L     ++ D L       T
Sbjct: 473 TAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQAVKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV---YDSTCK 613
           T  +L+ +T G     P   L     +  GE + Q + +   N++I+   V   +D    
Sbjct: 533 TQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATT 592

Query: 614 LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSSE-EKMKLVVKVTGDHVAVVGENRK 669
               +  G    VE  E     T K K+    K+  E +++  V  +  D V ++ +N  
Sbjct: 593 YFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVFLISQNGY 652

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            L F+I+++P +  +  GV+  + K+  +              +    R   +  +    
Sbjct: 653 ALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYLLTQ--RGSLKRVSIDEI 710

Query: 729 WLGKRGGVGSLVPK 742
               R   G  V +
Sbjct: 711 PATSRAKRGLQVLR 724



 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 27/146 (18%)

Query: 519 PITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
               +IS  G+        V         + A++ KE D L+ A   +T+   L L+  G
Sbjct: 642 DDVFLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFICNTSSFYL-LTQRG 700

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ----------------DIVTAFVYDSTCKL 614
               +    + +       +Q+L +L +                  D+ +  V ++   L
Sbjct: 701 SLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFSTEVDENDQTL 760

Query: 615 LVVSSKGNAFIVEESE--IIANTRKG 638
           LV S+KG  + +   +  +   T  G
Sbjct: 761 LVQSNKGTVYEIRLQDLNLSERTSNG 786


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/740 (34%), Positives = 403/740 (54%), Gaps = 30/740 (4%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSAR 77
             SL      RY+ YALS I  RA+PD+RDG KPV RRI+  M  +  L   A ++KSA+
Sbjct: 57  PASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAK 116

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG V+G+ HPHGD S+Y++LVR+AQ F  RYPL+ G GNFG++DGD AAA RYTE R+ 
Sbjct: 117 VVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRLA 176

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            ++  +L  + +  V FR TY+    EPVV P++ P LL NGT+GIAVGMAT+IP H++ 
Sbjct: 177 MLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLG 236

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI+NP++  + LL+++ GPDFPTGG I+  ++ + + Y  G+G  R+R  + 
Sbjct: 237 ELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYK 296

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E++ RG   IV+T IPY V KS L+ K  +L+  +++PL+ D+RDES +DVRIVL  K 
Sbjct: 297 LEDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKDVRIVLELKK 356

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLS------MGRVPQVMPLDGILKEWLAHRREV 371
              +P+L+M  ++  + ++T F +N+  L           P+ + L  IL  +L  R +V
Sbjct: 357 -DANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFDV 415

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + +R    +  + RRV IL+G    Y  +DE+I IIR  +        +++RF L E QV
Sbjct: 416 VTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQV 475

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           DAIL ++L  L +LE   ++ EL    AE ++I  +L    + W  +  E+ E+K  ++ 
Sbjct: 476 DAILEMKLYKLARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYND 535

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT        +     +A I  E   VVI+  GW++ +     D S    +EG
Sbjct: 536 K-----RRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRV-REVKDPSTTRLREG 589

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D++   L       ++L S  G AY     ++ +  G+GE +Q     +  + +V+A   
Sbjct: 590 DAVMAVLAGSLKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSL 649

Query: 609 DS----TCKLLVVSSKGNAFIVEES-EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
           D+      KL+ V+ +G          +  +TR G+ + K    +++  V  VT  D +A
Sbjct: 650 DARLPRPQKLVGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLA 709

Query: 663 VVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG-ISDVICFKICE---GLTWIDSAGR 717
           V+ E    L+  + ++ E+   GKGV +     G  + D +     +    L +    GR
Sbjct: 710 VLTEKTSALVCKVAEVNELAGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGR 769

Query: 718 SYNRSENDLLGWLGKRGGVG 737
             + S       +  RGG G
Sbjct: 770 KLHLSPAKYE--VTGRGGKG 787


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/740 (32%), Positives = 402/740 (54%), Gaps = 26/740 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++E+ + +V +   ++E YL Y+LS I  RA+PD+RDG KPVHRRI++A  ++GL     
Sbjct: 1   MIEQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARIVGEV+GK HPHGD +VYD++VR+AQ F QRY LI G GNFG+IDGDSAAA RY
Sbjct: 61  HKKSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  ++E +L  ++++ ++F D ++    EP V PS+ PNLL NG+SGIAVGM+T I
Sbjct: 121 TEARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+  A + L+++ +++IE L+EYI GPDFPTGG I+   + I ++YR G+G   
Sbjct: 181 PPHNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKII-GNDEIKKAYRTGKGRIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E+  R    IV+TEIPYQ+ K++LIE+IA  I   ++  + ++RDES +D   
Sbjct: 240 LRGKTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       + ++++  ++  + ++T   +NM  L   + P+VM L  IL+ +L  RREV
Sbjct: 300 IVIELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQQ-PEVMDLKTILQHFLDFRREV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
           + RR+ F +Q    R  IL GL  A  N+D++I+IIRN  KP   K  +  + ++++ Q 
Sbjct: 359 VTRRTEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDKLNVSKKQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL+++L+ L  LE  +I  EL  L  + E ++S+LN  +   + I  E+ E+KE +  
Sbjct: 419 AAILDMKLQRLVSLERKKITEELTELKEKIEALNSILNEKEVMDDLIKKELIEIKEEY-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               G  R T      +     +  +I+ E I +  S   +++     + D+  +   +G
Sbjct: 477 ----GDERKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLK----RTTDIENIRAGKG 528

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D +   +   T D +L  +  G+ + L    +    G   G+ +   + L  +++IV   
Sbjct: 529 DYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDEEIVDIL 588

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
           +         + + + +G        E    T      + ++ E+++       G    +
Sbjct: 589 ILTDETKEKYITIATEEGLIKKTVGKEYET-TVSSIKAINLNEEDEVIGAKVTDGQQNLL 647

Query: 664 V-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYN 720
           +  +  + + FS D I +  R  KG +     +     VI F +       I +      
Sbjct: 648 LGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAEN--DKVISFNLTANSNYVITATADGRA 705

Query: 721 RSENDLLGWLGKRGGVGSLV 740
              +     +  R G G   
Sbjct: 706 TRTDINAYQIQNRNGKGLKT 725


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/758 (30%), Positives = 400/758 (52%), Gaps = 34/758 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+    +   +   +L Y++S I  RA+PD+RDG KPVHRRI++ MSE+G+   +A+K
Sbjct: 62  KNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNSAYK 121

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+V+GK HPHGD SVYDS+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYTE
Sbjct: 122 KSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTE 181

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A L+++G+ ++ VDF   Y+  + EP V P +FPNLL +G SGIAVGMAT IP 
Sbjct: 182 ARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATKIPP 241

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  + + L  N +IS+E+L + + GPDFPTG  I      I ++Y+ GRG F +R
Sbjct: 242 HNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIF-GVSGIQQAYKTGRGSFILR 300

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  +E    G   I+  EIPY+V+K  +IEK+ +L+  KR+  ++D+RDE+      V+
Sbjct: 301 AKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIRVV 360

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F   +  +P++++  ++  +D +  + +NM  +  G  P+++ L  IL ++L H++E+  
Sbjct: 361 FEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGE-PKLLNLKEILYQYLLHQKEINL 419

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           R  +F ++    ++ +L G+ +A  NIDE++ II++     + +  +  RF L   Q  A
Sbjct: 420 RGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKRFDLNPIQTKA 479

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+++RL  L  L   ++ +E++ + AE  +I+ ++ S ++    +  +  E+   F+   
Sbjct: 480 IVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEEIIASDEKLVQLVIDQHLEIINNFADP- 538

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RR+   E++      + + +I +  + + +++  +++              V  S 
Sbjct: 539 ----RRS---EINGEIGNIIDEDLIPRSDVIISLTDNNYVKRINLEEYRVQNRGGVGSST 591

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQ 600
               + D LK    A+T   +L++++  K + L    +      G+ I    L+ +  ++
Sbjct: 592 SSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDE 651

Query: 601 DIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I T  V++       L+ VS  G              + GK  LK++  + +     V 
Sbjct: 652 QIYTLLVWNQDYAHHFLVTVSRLGLIKKTPLEFYKNINKNGKYALKLNENDTLVSAFIVK 711

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWID 713
            +    V +   + K+  F  D I    R   GV+     +     VI         ++ 
Sbjct: 712 ENEPCEVLIGSSSGKVNKFDFDSIRSTGRVAMGVKGIKLTND--EFVIGASHSLSGEYVF 769

Query: 714 SAGR-SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + GR  Y +  +        R   G        ++G  
Sbjct: 770 ALGRFGYGKKTSIDEYRQTSRNSKGVKTLN-TEKAGSL 806



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 148/428 (34%), Gaps = 32/428 (7%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV--LSMGRVPQVMPLDGIL 361
           E+ ++V  ++   +        +   F L+ ++T+  ++M +  L+   + ++M     +
Sbjct: 444 ENIDEVVKIIKSSSSDAQAQEKLGKRFDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQI 503

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL--IAYLNIDEIIAIIRNEDKPKPVMVS 419
           K  +    E++          ID+ +EI+             EI  II  +  P+    S
Sbjct: 504 KAEINRIEEIIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPR----S 559

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL-LNSGKQQWNQI--- 475
              ++    + +  + L   R      + S   +L  + + +  +   +       I   
Sbjct: 560 DVIISLTDNNYVKRINLEEYRVQNRGGVGSSTSSLYKD-DYLKGIWFANTHTDLLIITSK 618

Query: 476 --ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK--EPITVVISNRGWIR 531
               ++R  +   S     G        + + ++        +       V +S  G I+
Sbjct: 619 AKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDEQIYTLLVWNQDYAHHFLVTVSRLGLIK 678

Query: 532 SLKSHSV------DLSALHFKEGDSLKIALHAHTTDRI--LLLSTDGKAYTLPAGNLLSG 583
                           AL   E D+L  A      +    L+ S+ GK       ++ S 
Sbjct: 679 KTPLEFYKNINKNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKVNKFDFDSIRST 738

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                 ++  I L +++ ++ A    S   +  +   G        E    +R  K    
Sbjct: 739 GRVAMGVKG-IKLTNDEFVIGASHSLSGEYVFALGRFGYGKKTSIDEYRQTSRNSKGVKT 797

Query: 644 VSSE--EKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
           +++E    +  +  + G+  A +V +   L+  S+  I   SR  KGV++ + KD    +
Sbjct: 798 LNTEKAGSLCFISIIKGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDN--DE 855

Query: 700 VICFKICE 707
           +    I +
Sbjct: 856 IQSVTIVD 863


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/764 (32%), Positives = 392/764 (51%), Gaps = 49/764 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +    L     E Y+AYALS +  RA+PD+RDG KPVHRRI+ AM E+G+     +K
Sbjct: 98  ESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYK 157

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGD +VYDSLVR+AQ F  R PLI G GNFG+ID D  AA RYTE
Sbjct: 158 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTE 217

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +AE ++L  +D+D VDF   ++    EP V P++ P LL NG SGIAVGMAT+IP
Sbjct: 218 CRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIP 277

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   ALI NPE ++++LLEY+  PDFPTGGII+ +   ++++YR GRG   V
Sbjct: 278 PHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNL-GVLDAYRTGRGRVVV 336

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R +  VE  +       +++TEIPYQ  K+ L++KIAEL+  K +  + DIRDES  +  
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R  DP L++ +++  + +++ F  NM  +  G  P++M L  +L+ ++  R  
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCS 455

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RR+ F++    +R   ++G+++   N+DE+I +I+N            S + L+E Q
Sbjct: 456 VVERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSEYGLSEKQ 515

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL + LR L  LE  ++  E  +L  +  K++ LL++       I  E  E+K+ FS
Sbjct: 516 AEAILEITLRRLTTLERKKVTDESSSLTEQITKLEQLLSTRANILKLIEQEAIELKDRFS 575

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVD 539
                  RR+   +    D   +   +I  E + + IS +G+++ +K          ++ 
Sbjct: 576 SP-----RRSMLEDSDSGDLEDI--DVIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIG 628

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
            S    +  D++   L  H  D +L  S  G  Y+  A  +   S    G  +  ++ ++
Sbjct: 629 KSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMS 688

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
             + + +      +     LL+++  G    V           G   ++++S +++K V 
Sbjct: 689 EGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVR 748

Query: 655 KVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK------------------- 693
             + D  VA+  +N  +++ + D +  +SR  KGV     K                   
Sbjct: 749 CCSSDDLVAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDM 808

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +    D    K   G   +      Y +          +   VG
Sbjct: 809 EEKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVG 852



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 79/247 (31%), Gaps = 40/247 (16%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G I+ +         S  + A+    GD LK     
Sbjct: 691 ERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCC 750

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---- 613
            + D + + S +G         + +   + + +  +  L +   I +  +  ++ +    
Sbjct: 751 SSDDLVAMASQNGLVVLSTCDGVRTLSRNTKGVTAM-RLKNEDKIASMDIIPASLRKDME 809

Query: 614 ----------------LLVVSSKGNAFIVEESEIIAN--TRKGKTFLKVSSEEKMKLVVK 655
                           LL V   G    V  S    +   R G +  K + ++++  V  
Sbjct: 810 EKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFV 869

Query: 656 V---------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFK 704
           V         + + V +V ++  +    +  I   S R +GV L      G I       
Sbjct: 870 VGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLIS 929

Query: 705 ICEGLTW 711
             +    
Sbjct: 930 AADEEET 936


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/857 (28%), Positives = 404/857 (47%), Gaps = 117/857 (13%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D I  ++  V  NV  V L   L++ ++ YA+S I +RA+PD+RDG KPVHRR+++ M
Sbjct: 39  SDDGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDM 98

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            ++ +      KKSAR+VG+VIG+ HPHGD +VY+++VR+AQ F  R PLI GQGNFGNI
Sbjct: 99  YDLKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNI 158

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD  AA RYTE RMT++AE++LQ +D++ VD    Y+  +  P V P++FPNLL NG+S
Sbjct: 159 DGDGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSS 218

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP HN+ E+ +  +AL+DNP++ ++ L+ YI GPDFPTGG IV     I E
Sbjct: 219 GIAVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIV-GNAGIRE 277

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +YR GRG   +RAR  +EE   G   I V EIPY V KS ++++IAEL+  K+I  + ++
Sbjct: 278 AYRTGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEV 337

Query: 302 RDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D S +D +  +     R    + ++ ++F  + +++ FP+NM  L     P+ +PL  I
Sbjct: 338 NDLSDKDNQVRIAIDLKRDAYEEAVLNNLFERTSLQSSFPINMIALVHNH-PRQLPLKEI 396

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---- 416
           L E++  RREV+ RR+ + ++   R+  + +GL++A  NI++I+ +I +           
Sbjct: 397 LSEFINFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRL 456

Query: 417 -----------------------------------MVSRFSLTENQVDAILNLRLRSLRK 441
                                                 ++ L+E Q  AIL L+L+ L  
Sbjct: 457 MEEPWDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTH 516

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L   +I+++   L+   +    +LN+  +    I  E+ EVKE F+       RR+ F E
Sbjct: 517 LAGDEIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFADK-----RRSDFTE 571

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKI 553
                    +   I  + + V +S  G+I+                  A   K+ D +  
Sbjct: 572 DYGK---LSKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISR 628

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQLLIDLNHNQDIVTAFV--- 607
               +T D ++  +  G+ +     +L +       G  IQ +  +   + I        
Sbjct: 629 MAVTNTHDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSE 688

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK----GKTFLKVSSEEKMKLVVKVTG-DHVA 662
           +D    +++ +  G    V+ S   +  ++        + +   + +      +G D V 
Sbjct: 689 FDENHFIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVF 748

Query: 663 VVGENRKLLIF--------------------------SIDQ----------------IPE 680
           V   + + +                            + DQ                I  
Sbjct: 749 VFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRP 808

Query: 681 MSRGKG-VRLQSYKDGGIS-DVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGG 735
             RG G +R+   + G  +  +I   + E       + + G        D+   +  RG 
Sbjct: 809 SGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVMVTANGYGKRILLTDIPLRM-NRGS 867

Query: 736 VGSLVPKGFPRSGKFLS 752
            G        R+GK + 
Sbjct: 868 SGVKTMSHMDRNGKLVG 884



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 75/274 (27%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD----------LSALHFKEGD 549
            E      A L  +  ++    ++ +  G+I+ +K  +            + A+  +EGD
Sbjct: 674 IEEGEKITALLPVSEFDENHFIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGD 733

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTL---------------------------------- 575
           SL  A  +   D + + S+DG+   +                                  
Sbjct: 734 SLMGAEISSGDDDVFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEG 793

Query: 576 ---------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNA 623
                      G   SGRG G     +I L   Q  V+  +    ++  + ++V++ G  
Sbjct: 794 EVKVVDRHAGQGIRPSGRGSGA--LRIIKLRPGQTAVSLILLSVDETDPEAVMVTANGYG 851

Query: 624 FIVEESEIIANTRKG----KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678
             +  ++I     +G    KT   +    K+  VV+        V+ +   +    +  +
Sbjct: 852 KRILLTDIPLRMNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNL 911

Query: 679 PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
           P   R  G             VI  +  EG + I
Sbjct: 912 PLPGRTAG------------GVIVMRPYEGESII 933


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 387/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D + ++  +   +D++  +  NM  +      QV  +  IL  ++AHR+ ++  R
Sbjct: 302 LKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHFTPHQV-GIQKILSSYIAHRKSIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR  D     K  +   ++ TE Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENLKVSYAFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E D L    + + +++      +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGDEATMYNVMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S+L     ++ D
Sbjct: 475 GNERRSELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRTSPRSFNASSLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI-DLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L  +  +  GE +   I +   ++ I+ A 
Sbjct: 535 HLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKWKEIGEHLSQHITNFATDELILHAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + D         V+  G     +  ++       T+  K     + ++++  V  +  + 
Sbjct: 595 IVDYFEKGSYFSVTQLGQIKRFDRKDLTPWRTYRTKSTKYAKLKNEQDRIVSVAPIFFED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++      L FS +++P    +  GV+  + K G           +    +   G   
Sbjct: 655 ILLISHQGYALRFSAEEVPVQGLKSAGVKAMNLKAGDHIAAAFLASTDSFFVLTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             + +D+      R   G LV +
Sbjct: 715 RVATSDI--PQTSRANRGLLVLR 735


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/753 (30%), Positives = 401/753 (53%), Gaps = 29/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI ++ +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGI-LQGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R  QV  L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQV-GLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ +S     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEESELLKVIKKELREIKKKYSTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++     S   S    +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L     +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTGD 659
            Y   D     +++S  G       +E     T K +  T +K+  E +++  V      
Sbjct: 598 AYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDESDELVNVFLTDQT 657

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
               V +V      L +S++++P +  +  GV+  + K             EG T  +  
Sbjct: 658 EEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIVLI 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +           R   G +V +   ++
Sbjct: 718 TQRGAAKRMLAQEITQLGRAKRGLMVLRELKKN 750


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 219/752 (29%), Positives = 399/752 (53%), Gaps = 29/752 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G     AF+
Sbjct: 5   QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++Q AE +LQ +D++ VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L  I +P+ S+EKL+E++ GPDFPTGGI V+ R+ + ++Y+ GRG   VR
Sbjct: 185 HNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGGI-VQGRDGLKQAYKTGRGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +E++      I +TEIPY+V K++L++KI E+ + K+I  + ++RDES  +   + 
Sbjct: 244 SRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGLSIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D   ++  +   +D++  +  NM  ++  R  + M L  I++ ++  ++EV+ 
Sbjct: 304 IELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLRPER-MGLKPIIQAYVDFQKEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           +R+ F +Q  + R+ I+ GL+ A   +D++I  IR   ++   K  +V RF  +E Q ++
Sbjct: 363 KRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVERFDFSEKQAES 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  ++K+E   L     + + +LN   +    ++ E+R+VK+ ++   
Sbjct: 423 IVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQILNDPAKLSRVLSAELRKVKKQYATP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG 548
                R +  +    +    +   + +E + V++S  G+++     S   SA     K+G
Sbjct: 482 -----RLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYLKRSSLRSYKASADEDGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D         T D +L+ +  G     P   +   R    GE +   I L  ++ I+ A+
Sbjct: 537 DQPVFKHELSTLDHLLMFTNKGNLIYRPVYEITEARWKDTGEHVSQTIGLADDEIILKAY 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSS-EEKMKLVVKVTGD 659
               +      L+ +  G        ++       +K  T+ K+     K+  VV+V   
Sbjct: 597 DVKNFKQPINFLIATDDGYIKQTALQDLKPGRTYRKKAITYAKLKKQGAKVVNVVQVDPK 656

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                + +  E+   L + + +IP +  R  GV+    +D  +++ +     + +  I +
Sbjct: 657 TAPATILLASEHGYGLRYDLVEIPTVGPRAAGVKSMDLRDDQVANFVLVNDEDQIGLITN 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            G       +++   +  R   G  + +   +
Sbjct: 717 RGSFKRMKVSEIS--VTSRARRGVQILRELKK 746


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/799 (32%), Positives = 418/799 (52%), Gaps = 71/799 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V + V ++S+   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM ++G D+ + +
Sbjct: 4   VSKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD SVYD++VRLAQPF  RY LI GQGNFG+IDGDSAAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM+++A+ IL+ ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGM T+IP
Sbjct: 124 EIRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A LA I++ +I  E+L++YI GPDFPT  II E +E IV +YR G+G  +V
Sbjct: 184 PHNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQV 243

Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RA   +E +       I++ EIPYQ+ K RLIEKI EL+  ++I  + ++RDES +D   
Sbjct: 244 RALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMR 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+    R  + + ++ S++ L+ ++T   +NM  L +   P ++ L  I+  ++ +R+E+
Sbjct: 304 VVIELKRESEANFVLNSLYALTRLQTSININMIAL-LKGKPTLLNLKKIISSFIDYRKEI 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + +R+ F +    +RV  L+ ++I+  NID II++I+    PK                 
Sbjct: 363 VIKRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETL 422

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                     S +   E Q   IL+L+L+ L  LE+ ++  E  
Sbjct: 423 IELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYI 482

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +L  E   +  +L +  +    I  E+  +K  +        RRT   E +       Q+
Sbjct: 483 SLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDK-----RRTKIIEDNSK---FNQE 534

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I+K+ + V++SN+G+I+          K      S+   KE D +K  L   T + IL
Sbjct: 535 DLIKKKKVIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENIL 594

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
            +S  G+ +++    L   S    G+ I   + L   + I + F    +     +L+ + 
Sbjct: 595 CVSNFGRIFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFKKGNYILIATL 654

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
            G    +    +    + G   + ++  +++  +  V     + +   + K + FS + +
Sbjct: 655 MGLIKKISMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSV 714

Query: 679 PEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
               R      GV++Q  KD  +  +I  +  + +  I   G  Y     +       R 
Sbjct: 715 RLTGRKSMGVMGVKIQ--KDEKLVSMIIVEKDKDILTITENG--YGNRTKESEYLKKSRF 770

Query: 735 GVGSLVPKGFPRSGKFLSS 753
             G  V K   R+GK + +
Sbjct: 771 IRGVSVIKNDERNGKIVGA 789


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/767 (32%), Positives = 402/767 (52%), Gaps = 34/767 (4%)

Query: 6   ISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +S  N      + K + +   + + +L Y++S I  RA+PDL+DG KPVHRRII+AM+++
Sbjct: 1   MSEKNLEHNHGIIKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F  RYPL+ G GNFG+IDGD
Sbjct: 61  GITADKPHKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGD 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+ +V+  I++ +D + V F D Y+  + EP      FPNLLANG  GIA
Sbjct: 121 GAAAMRYTEARLAKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESY 243
           VGMATSIP HN++E+  A  A IDN +I+I+++L+ +I+GPDFPTG ++      + E Y
Sbjct: 181 VGMATSIPPHNLREVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIR-MREGY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + GRG   +RA+  +EE  R     ++TEIPYQ  K++LIE+IAEL+  K++  + DIRD
Sbjct: 240 KTGRGAVTIRAKVALEENDR-HARFIITEIPYQTNKAKLIERIAELVKTKQLEGISDIRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   ++    R  +PD+++  ++  ++++T + LN+  L    +P ++ L  I+K 
Sbjct: 299 ESNYEGIRIVIELRRDSNPDVVLSKLYKFTNLQTTYSLNLLSLHNN-IPVLLDLKSIIKH 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSR 420
           ++  +  V+ +RS F    I++R  IL+ L  A  NID I+ I+RN    ++ K  +   
Sbjct: 358 YVDFQINVIIKRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTEA 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F   E Q  AIL++RL+ L  LE  +I+ E+  +    + +  L++   +Q N +  ++ 
Sbjct: 418 FGFDEEQNKAILDMRLQRLVGLERGKIQQEMAQIKERIDYLTLLISDETEQNNVLKNQLS 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E+ E F        RRT   +    D     + +I      +++S+ G+IR +      +
Sbjct: 478 EIAEKFGD-----NRRTETIDEGLMD--IEDEELIPDVKTMILLSDEGYIRRVDPEEFRV 530

Query: 541 SALHFK-------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
                +         D + IA      D +L  +  GK +   A N+   S    G  I 
Sbjct: 531 QKRGGRGVSVNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTARGLPIV 590

Query: 592 LLID-LNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             ++ L     I          +    L  ++ KG     + S      + GK  + +  
Sbjct: 591 NFLNGLTAGDKITAILPLRNVKEKMNYLTFITEKGMIKKTDISLFDNINKNGKIAINLKE 650

Query: 647 EEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICF 703
           ++++  V   TG+  + V  ++ K++    + +  +SR   GV+     +   +   +  
Sbjct: 651 DDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLSRTASGVKAIKLDENDVVVGAVTS 710

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              E +T I S G    +  N     +  R G G  V     ++G F
Sbjct: 711 FGIENITTISSKGSF--KKTNIDEYRISGRNGKGIKVMNLNEKTGDF 755



 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGN 579
           V+      +R L   +  + A+   E D +  A+ +   + I  +S+ G  K   +    
Sbjct: 675 VIRIQENIVRPLSRTASGVKAIKLDENDVVVGAVTSFGIENITTISSKGSFKKTNIDEYR 734

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--K 637
           +    G G  +  L       D  +      T  + ++S+ GN    + S+I    R   
Sbjct: 735 ISGRNGKGIKVMNLN--EKTGDFKSIIAARETDLVCIISTDGNLIKTKASDIPVLGRAAA 792

Query: 638 GKTFLKVSSEEKMKLVVK 655
           G   +++S   K++ V+ 
Sbjct: 793 GVRGIRLSEGNKIQAVML 810


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/749 (33%), Positives = 416/749 (55%), Gaps = 37/749 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P ++DG KPV RRI++AM +MGL       KSAR+V
Sbjct: 8   LDLAAYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVV 67

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR++ +
Sbjct: 68  GEILGKYHPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPI 127

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+L+L  + +  VDF   Y+  + EPV+ P++ P +L NG SGIAVGMAT IPSHN+ EI
Sbjct: 128 ADLLLSEIQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEI 187

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+AL+ NP ++   L+ Y+  PDF  GG I+   + + + Y  G+G  RVRAR+ ++
Sbjct: 188 TQAAIALLKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEID 247

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W ++V+E+P     ++++ +I E                        + L+E +
Sbjct: 248 KMARGQWRVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKV 307

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RD+S     VR++  PK+  ++P   + ++   + +E    +N+ ++     P    L  
Sbjct: 308 RDDSDGEHPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKT 367

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A++RR+ IL G LIA+L+IDE+I +IR  D+PK  +++
Sbjct: 368 ILQEWLDYRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKADLMA 427

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            FSL+E Q + IL +RLR L +LE  ++++EL+ L  E+  + +LL     +   I  E+
Sbjct: 428 NFSLSEIQAEDILEIRLRQLARLEGIKLENELNELREEQSSLHTLLGDENAKKKHIIKEM 487

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F  +      R T  E +     T        EP+T+++S +GWIR+   H VD
Sbjct: 488 QADAKQFGDA------RRTLVEAAERATLT---QTTADEPVTLILSQKGWIRARSGHDVD 538

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           ++   FKEGD L+  L A T   +++L   G++YT+   ++  GRG G  +  LID+  N
Sbjct: 539 IAQTVFKEGDGLQQILPARTVQPVIVLDDSGRSYTINPADIPKGRGDGVPLASLIDMPAN 598

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----- 654
             IV+    +     L+ +S G  FI +   + +  + GKT + + + E +   V     
Sbjct: 599 AQIVSMLTGEPEDHYLLANSGGYGFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLS 658

Query: 655 -KVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTW 711
             +  D  + +   + +LL F + ++  M++G+G+++ S ++G  +  +      +    
Sbjct: 659 SLINPDCKIMLATAHNRLLAFPLGEMKIMAKGRGLQMISLQEGDRVQRLNVLSSADYRLT 718

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           I       +     +     KRG  G ++
Sbjct: 719 IVGKRGGISHETLHIADITQKRGRKGKIL 747


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/793 (29%), Positives = 399/793 (50%), Gaps = 54/793 (6%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   DLLATGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTAD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  + +  +L  + E  VDF + ++    EPVV P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID P++  E+L E I GPDFPTGG I+++ E I E+YR G+G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDT-EGIKEAYRTGKG 244

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              V+    VE +       +    IVVTE+PYQV KS  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVQGVTHVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R      ++E ++  + +++ F + +  L   + P  + L  +L+
Sbjct: 305 DESDRQGMRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNK-PCQLSLRELLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L  R + L R+    +     R+ +L+GLLIA  N+D++I I+RN       K     
Sbjct: 364 EFLNFREQTLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQE 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             +++E Q D+IL + +R L  LE+ ++++E ++L     ++  LLN   +    +  ++
Sbjct: 424 ELTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDL 483

Query: 480 REVKEIFSKSTDLG-----------------------------RRRTTFCEVSRADKATL 510
           R +K  F                                      +++  +   +   +L
Sbjct: 484 RALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTTPSKSSEPKAKDSSSLSL 543

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                  +   + I+ +G+I    +   +  +   K  D           D +++++  G
Sbjct: 544 FTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKGTDFPIYTQRIQQQDSLIVITDQG 603

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLID---LNHNQDIVTAFVYDSTCKL---LVVSSKGNAF 624
           KAY +    +        ++  L+      ++Q I + F++     L   ++++ +G   
Sbjct: 604 KAYPVSGSEIPPQESQPCSLLNLLPNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIK 663

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSI--DQIPEM 681
            +  SE+     +G + +K+  ++++  +   +  H VA+     ++L  +   +QIP M
Sbjct: 664 RLSMSELEQIGNRGLSLIKLKDDDRLGYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLM 723

Query: 682 SR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +G +    + G  I   +  KI + L  I  +G       N L   + K G +G++
Sbjct: 724 GRNAQGNQALRLRYGENIVGCVTPKIDDNLLLITQSGYGKRIPVNSL--RITKLGEIGTM 781

Query: 740 VPKGFPRSGKFLS 752
             +   ++     
Sbjct: 782 ALQFSSKTDNLAG 794



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 29/208 (13%)

Query: 522 VVISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           ++++ +G I+ L         +  LS +  K+ D L        +  + + +  G+   L
Sbjct: 654 ILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYLSLTSESHEVAIATNGGRVLRL 713

Query: 576 PAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
              +    L+     G      + L + ++IV          LL+++  G    +  + +
Sbjct: 714 TTRDEQIPLMGRNAQGN---QALRLRYGENIVGCVTPKIDDNLLLITQSGYGKRIPVNSL 770

Query: 632 IANTRKG-KTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
              T+ G    + +     ++    +++      V +V    + LI  ID +        
Sbjct: 771 -RITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILVTNQERRLIIPIDSV-------- 821

Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDS 714
                 KDG    V+  K  E +  + +
Sbjct: 822 --GIWGKDGVGDQVVKLKPQESILLVVA 847


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 220/752 (29%), Positives = 406/752 (53%), Gaps = 29/752 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G     AF+
Sbjct: 5   QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKAFR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 65  KSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ AE +L  +D++ VD    +++ + EP V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A L  I +P  S+EKL+E++ GPDFPTGGI ++    + ++YR G+G   VR
Sbjct: 185 HNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGI-IQGINGLKQAYRTGKGRVVVR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  VEE+      I+V+EIPY+V K+ L++KI E+ + K++  + +IRDES  D   + 
Sbjct: 244 SKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSIA 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D   ++  +F  +D++  +  NM  ++  R  + M L  I++ ++  ++EV+ 
Sbjct: 304 IELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLRPER-MGLKEIIQAYVDFQKEVIT 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           +R+ F ++  + R+ I+ GL+ A   +D++I  IR   ++   K  +++ F  +E Q +A
Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLITSFDFSERQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  ++KSE   L    ++ +++LN+  +    ++ E+R+VK+ ++   
Sbjct: 423 IVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNILNNPNELSKVLSAELRQVKKRYATP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--HFKEG 548
                R +  +    +    +   + +E + V++S  G+++     S   SA     KEG
Sbjct: 482 -----RLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYLKRSSLRSYKASAEEDGLKEG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D        +T D +++L+  G     P   ++    +  GE I   I L  ++ I+ AF
Sbjct: 537 DFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIMETRWKDTGEHISQAIGLADDEIILKAF 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVS-SEEKMKLVVKVTG- 658
               +D     L+ +S G        +        +K   ++K+  ++ K+  V K+T  
Sbjct: 597 DVKNFDEPVSFLIATSDGYIKRTSLKDFKPGRTYRKKAAVYIKLKAADAKVVNVAKLTSQ 656

Query: 659 ---DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
              + + +   N   L + + ++PE+  R  GV+    ++  I++ +     + +  I +
Sbjct: 657 STKETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLREDEIANFVLVNDHDQIGLITN 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
            G       +++   +  R   G  + +   +
Sbjct: 717 RGSFKKMKVSEIS--VTSRARRGVQILRELKK 746


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/749 (30%), Positives = 394/749 (52%), Gaps = 29/749 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   
Sbjct: 1   MRDAKIETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + LI +P+ S+EKL+E+I GPDFPTGGI V+  + I ++Y+ GRG   
Sbjct: 181 PTHNLGEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGGI-VQGADGIKKAYQTGRGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRAKTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ + + ++  +   +D++  +  NM  +   R  +V  L  IL  +LA ++EV
Sbjct: 300 IAIELKRNANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRV-GLKHILTSYLAFQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+S+ +    RR+ I++GL+ A   +D++I  IR   N    K  ++ +++ T+ Q 
Sbjct: 359 VRRRTSYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFTDVQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  +++ E  +L    ++   +L+  ++    +  E++ VK+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDEELSKVVRREMQAVKKEF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
               G  R T  E          +  +  E + V++S+ G+I+     S   S+L     
Sbjct: 477 ----GNPRRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P   L     +  GE I   I L  +++I+
Sbjct: 533 REDDYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEII 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVT-- 657
            A V+D        +  +S G        +    +R K    + V  + K   VV V   
Sbjct: 593 KAMVFDKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSKDATVVSVDYY 652

Query: 658 --GDH---VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
              D    +  +      + F +  +P    R  GVR  + KD   + V    + +G   
Sbjct: 653 EPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDD-ALVDLVLVKDGQRV 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                R   +        +G R   G LV
Sbjct: 712 ASITQRGAFKEMPIDEIAVGARARRGELV 740


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAAGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 225/753 (29%), Positives = 391/753 (51%), Gaps = 30/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++  ++   + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK A
Sbjct: 1   MEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+
Sbjct: 61  RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           TQ+AE ++  +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  HN+
Sbjct: 121 TQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EIC+A L  +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+   
Sbjct: 181 TEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEV 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
              E  R    +++  IPY V K+ L++ IA+L   + I  + DI+DES  +   ++   
Sbjct: 240 DATEDRR----LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKV 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
                  L++  ++  + +E+   +   VL  G  P++M L  ++  ++ HR +V+ RRS
Sbjct: 296 RDDDIKPLVLNQLYEHTALESSIGIINLVLV-GNQPKLMNLKDLIDSFIDHRLDVILRRS 354

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILN 433
            FR++    R+++L G+L A  +ID ++ I+++            + F L + Q+ AIL 
Sbjct: 355 QFRLERKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILE 414

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L   E+  ++SE+  L  E + ++ ++ S  ++ ++   EI E+++ +       
Sbjct: 415 MRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSR 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFK 546
            +     E          + +I  E   +++S  G ++ +++                 K
Sbjct: 475 IKFRGITER-------TMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
             DS+K  +H  + D +   +  G+ +   A  +   S    G +    + L   + +  
Sbjct: 528 TSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTE 587

Query: 605 AFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                      L++V+  G+        +  +   G   + +  ++++  V    GD ++
Sbjct: 588 IMKAPPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNI 647

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V+    K  +F+  +I E  R   GVR     +G    +  F +      +  + + Y 
Sbjct: 648 FVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTI-LTAFVVNSDEDILSISEKGYG 706

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RG  G +V +   R+G+   +
Sbjct: 707 KRTNISEFPIHHRGSSGVMVYRDTERTGRVSHA 739



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 14/207 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +A  EK    ++++  G ++         S S  L  +  ++ D L    +      I
Sbjct: 588 IMKAPPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNI 647

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            +LS+ GKA       +         ++ +  LN    I+TAFV +S   +L +S KG  
Sbjct: 648 FVLSSKGKASVFNTSEIRETGRTSMGVRSM-RLNEGDTILTAFVVNSDEDILSISEKGYG 706

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIP 679
                SE   + R     +     E+   V         D V +V  N K +     +IP
Sbjct: 707 KRTNISEFPIHHRGSSGVMVYRDTERTGRVSHAIPVRDEDEVILVSMNEKTIRIKASEIP 766

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKI 705
           E SR   GV+L      G   VI   +
Sbjct: 767 ETSRVTSGVKLMDI--DGDDRVIAAAV 791


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 219/753 (29%), Positives = 393/753 (52%), Gaps = 30/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGGI ++ ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGI-IQGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R   V  L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHV-GLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V +      D
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAVAK------D 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++     S    D +    K+G
Sbjct: 477 YRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +     +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVS-SEEKMKLVVKVT-- 657
            +       + L+ +S G       +++    T K +  +  K+  +E ++  V  +T  
Sbjct: 597 AFKTLKEPGRFLIATSDGYIKQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEP 656

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
               + ++ +N   L + +D++     R  GVR    +D   + ++      E +  I  
Sbjct: 657 VEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALVTDNETIALITQ 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            G     +  +L   +  R   G +V +   R 
Sbjct: 717 RGAFKRLAMKELS--VTSRARRGVIVLRELKRD 747


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 225/753 (29%), Positives = 400/753 (53%), Gaps = 29/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI ++ +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGI-LQGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R  QV  L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQV-GLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++     S   S    +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L     +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTGD 659
            Y   D     +++S  G       +E     T K +  T +K+  E +++  V      
Sbjct: 598 AYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDESDELVNVFLTDQT 657

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
               V +V      L + ++++P +  +  GV+  + K             EG T  +  
Sbjct: 658 EEMDVFLVSHLAFGLRYPLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIVLI 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +           R   G +V +   ++
Sbjct: 718 TQRGAAKRMLAQEINQLGRAKRGLMVLRELKKN 750


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 232/753 (30%), Positives = 386/753 (51%), Gaps = 30/753 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++   +   +++ YL YA+S I  RAIPD RDG KPV RR+++AM E+ +     +KK A
Sbjct: 1   MEKRPVEVEIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEAR+
Sbjct: 61  RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           TQ AE +++ +DE+ V+FR  ++    EP   PSK PNLL NG+SGIAVGMAT++  HN+
Sbjct: 121 TQFAEDMMEDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +A    + N   S++ LL+ + GPDFP GGI+  S++ ++E+YR G+G   V+   
Sbjct: 181 SEISDAIKYELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKD-LIEAYRTGKGKVIVQGEV 239

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
              E  R    I++  +PY V KS L+E IA L     I  + DI+DES  +   ++   
Sbjct: 240 DTSEERR----IIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRV 295

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
                  L+M  ++  +D+ET   +   VL  G  P+++ L  +L +++ HR +V+ +RS
Sbjct: 296 RDEDLKPLVMNQLYEHTDLETTIGIINLVLV-GNQPKLLNLKQLLDQFIDHRLDVILKRS 354

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            +R++  + R ++L G+L A  NID ++ I+R  D        +   F+L + QV AIL 
Sbjct: 355 RYRLEKKNERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASETLKKTFNLNDRQVKAILE 414

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  +E   + +EL ++  E   +  ++ S +++   +  EI E+K+ +       
Sbjct: 415 MRLQRLVHMERESVVNELKSIEKEIADLKEIIESEQKRIEVLEGEIDEIKKRYGDKRRTK 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFK 546
            +     E S        + +I  E   +++S  G ++ +                   K
Sbjct: 475 IKFKEIGERS-------TEDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRGGKGVNTSMK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
             D++K  +H  + D I   ++ G+ + + A  +   S    G +    + L  N+ +  
Sbjct: 528 ISDTVKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLGVSAGAFLKLQQNERVTE 587

Query: 605 AF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
                 D    L++V+  G         +      G   + +  ++++     +  D ++
Sbjct: 588 VMKAPADRGEHLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDDELVSASTIDTDTNM 647

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            V+    K  +F+  ++ E  R   GVR     +     V  F + EG   +  + + + 
Sbjct: 648 FVLSSKGKGSVFNTSEVRETGRSSMGVRSMRLGEEDYV-VTAFVVKEGQDILSISEKGFG 706

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +  N     +  RG  G LV +   R+GK   +
Sbjct: 707 KRTNLSEFPVHHRGSGGVLVYRDTERTGKISQA 739



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 16/195 (8%)

Query: 522 VVISNRGWIRSLKSHSV-DLSALHFK----EGDSLKIALHAHTTDR---ILLLSTDGKAY 573
           V+++  G+++   +  V D  +   K    +GD     + A T D    + +LS+ GK  
Sbjct: 600 VLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDD--ELVSASTIDTDTNMFVLSSKGKGS 657

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
                 +         ++ +  L     +VTAFV      +L +S KG       SE   
Sbjct: 658 VFNTSEVRETGRSSMGVRSM-RLGEEDYVVTAFVVKEGQDILSISEKGFGKRTNLSEFPV 716

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           + R     L     E+   + +       D V +V  N K +     +IPE SR   GV+
Sbjct: 717 HHRGSGGVLVYRDTERTGKISQAIPVKEDDEVIIVSMNEKTIRIKASEIPETSRVTSGVK 776

Query: 689 LQSYKDGGISDVICF 703
           L   +DG     +  
Sbjct: 777 LIDLEDGDRIMAVAV 791


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVSNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 295/622 (47%), Positives = 419/622 (67%), Gaps = 16/622 (2%)

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           ++G+D   VDF  TYN E+ EP + P  FPNLL NG SGIAVGMAT+IPSHNV E+ +A 
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------ 257
           L LIDNP +  E+L+E + GPDF TGG +V+S E + E+YR GRG FR+R  +       
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 258 -------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                  +E +G G W +V++EIPYQV K +LIE+IA+ I  K++P+LED+RDES E +R
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           IVL P++R++DPDLL ESIF L+DMETRF LNMNVL   R P VM L  +L+ W A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           +L RR+ +R+  I+RR+E++ G ++A+LN+D +I IIR ED+PK VM++ FSLT+ Q +A
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKAVMMAEFSLTDRQAEA 300

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ILN+RLRSLRKLEE ++K E   LLAE+E+++ LL S  +Q  ++  ++R +++ +++ T
Sbjct: 301 ILNMRLRSLRKLEEMELKQEKSELLAEQEELNKLLESPARQRTRLKKDLRALRKDYAEDT 360

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            LG RRT   E +         AMIEKEP+TV++S +GWIR+ K H        +KEGD+
Sbjct: 361 ALGARRTR-IEEAAPAVEFSMDAMIEKEPVTVILSQKGWIRAAKGHVDLAQEFKYKEGDA 419

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           L   LHA TTD++L+  +DG+ YTL A  L   RG GE ++ +IDL     I    V+  
Sbjct: 420 LAFILHAQTTDKLLIAGSDGRFYTLGADKLPGARGFGEPVRTMIDLPAETQIAAMMVHKE 479

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR 668
             KLL+ SS G  FI E  E++A T+KGK  + +  + K++++ +V    DHVA VGENR
Sbjct: 480 GGKLLLASSIGKGFIAETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGENR 539

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           KL++F+++++P M+RG+GV LQ Y+DGG+SD   F + +GL+W         R+END+  
Sbjct: 540 KLIVFNLEEMPVMARGQGVMLQRYRDGGLSDATTFVLEDGLSWQMGGSGERTRTENDIWQ 599

Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750
           W   RG  G L P+GFP++ +F
Sbjct: 600 WKVARGAAGRLPPQGFPKNNRF 621


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 224/748 (29%), Positives = 406/748 (54%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 225/752 (29%), Positives = 408/752 (54%), Gaps = 29/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP IS+ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGI-IQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   +F  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +DE+IA+IR        K  +V+ +  T+ Q +
Sbjct: 359 VNRTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKTE 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   A+    ++ M+  E + + ++ +G+I+   + S + S    +  K
Sbjct: 479 ------RLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D IL+ +  G+   +P   L   R    G+ +  L+ +  ++ I+ 
Sbjct: 533 QGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGD 659
            +    +      ++ +  G       + +   TR  K    +KV  ++++  V ++T D
Sbjct: 593 VYNEKNFQQEAFYIMATRNGMIKK-SHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTED 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK--ICEGLTWIDSA 715
            +  V+      L ++ +++ +   R  GV+  + K   + D +     +  G T I + 
Sbjct: 652 QIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLK---VEDFVVMTEVVEAGQTIIMAT 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +  +  +  L KR   G  + K   ++
Sbjct: 709 QRGAMKRIDFKVLQLAKRAQRGITLLKELKKN 740


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 282/798 (35%), Positives = 425/798 (53%), Gaps = 75/798 (9%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D    +  +   +   ++L    +  YL YALS +K RA+PD+ DG KPV RRI+++M  
Sbjct: 12  DPAEPTGPVPPGDDGELNLATYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYSMGR 71

Query: 64  MGLDFGA-------AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           MGL FG           KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQG
Sbjct: 72  MGLGFGGANGNAGAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFSQRYPLVDGQG 131

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+ DGD AAA RYTEAR+ ++  L+L  +D+  VDF+  Y+    EP   P++ P  L
Sbjct: 132 NFGSRDGDGAAAMRYTEARLAKITTLLLDEIDQGTVDFQPNYDGSTEEPKQLPARLPFSL 191

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG SGIAVG+AT IPSHN++E+ +A +ALI N ++S ++L   I GPDFP GG I+ S 
Sbjct: 192 LNGASGIAVGLATEIPSHNLREVADACVALIKNDKLSDDELFTLIPGPDFPGGGQIISSA 251

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------- 289
             I ++YR GRG  +VRARW +E++ RG W +VVTE+P  V   R++E+I EL       
Sbjct: 252 SDIADAYRSGRGSLKVRARWKIEDLARGQWQLVVTELPPGVSSQRVLEEIEELTNPKVKA 311

Query: 290 -----------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336
                      + A  + +L+ +RDES +D  VR+V  PK+R+++   L+ ++   + +E
Sbjct: 312 GKKALSQEQTQLKASILSVLDVVRDESNKDALVRLVFEPKSRTVEQQELITALLAHTSLE 371

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           T  P+N+ ++ +   P    L  +L EW+A R   + RRS  R+  +  R+ IL+G    
Sbjct: 372 TSSPINLTMVGLDGKPVQKSLRQMLVEWVAFRASTIERRSRHRLGKVLDRIHILEGRQTV 431

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
            LNIDE+IAIIRN D+PK  +++RF+L++ Q + IL +RLR L +LE  +I+ EL  L  
Sbjct: 432 LLNIDEVIAIIRNSDEPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELSELRT 491

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E+ K++ +L S       +  EI    ++F+ +      R T  +  +   A   +  + 
Sbjct: 492 EQGKLEEILGSPAALRRLMVKEIEADAKVFADA------RRTLIQAEKKAVA---EVKVV 542

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+TVV+S +GW+R+   H  + S   FK GD L       T D +L+  ++G+ YT+P
Sbjct: 543 DEPVTVVVSEKGWVRARTGHGHEASTFAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVP 602

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L  GRG G+ +  L++L     I+  F   S+ +LL+ SS G  FI     + +  +
Sbjct: 603 VSALPGGRGDGQPVTTLLELEGGTQILYYFAGPSSAQLLLSSSGGYGFIASVENMTSRQK 662

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-----------------------------DHVAVVGEN 667
            GK F+ V   E       V+G                              HVA     
Sbjct: 663 AGKAFVGVGEGETPCAPSVVSGAQGKVTFAGKEGSTAPGAAGAQATLLAPATHVACASTG 722

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSEND 725
            ++L F I ++  M+  G+G+ L   +    ++    +        ID  GR     +  
Sbjct: 723 GRILTFEITELKTMANGGRGLMLIDLEAKDTLAGAAAYTRS---IRIDGIGRGGKERDET 779

Query: 726 LLGW-----LGKRGGVGS 738
           L           RG  G 
Sbjct: 780 LEIRSLNNARAARGRKGK 797


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 416/759 (54%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++ GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM +VAE +++ +D+  VDFR  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 127 ARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++D+  +S+  L+E + GPDFPT   I+ + ES++++Y  G+G   +R
Sbjct: 187 HNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYN-ESLIKAYTTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   ++
Sbjct: 246 ARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP ++M  ++  +++   F +N   L  G +P+ + L  ++  ++ HR+E++ 
Sbjct: 306 LEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNG-IPKQLNLKELISAFIEHRKEIVR 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL IA  NID +I IIR        K  ++  F+L+E Q ++
Sbjct: 365 RRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKEFNLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  +E  +++ E   LLA  +  + +LNS ++  N +  EI  +   F    
Sbjct: 425 ILDMKLQKLTSIETEKLEEEFKILLALIKDYEDILNSPERVVNIVREEIINLSLKF---- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    ++++E + V+++ +G+I+ +      L  +  K    
Sbjct: 481 --GDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               + D + I L  +T D + ++S +GK Y + A  +   S    G+ ++ LI+L   +
Sbjct: 539 FDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGETE 598

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+     +       LL+ ++ G    +E         +G   +K+   + +     V+
Sbjct: 599 EILAIKNCNELSVDNYLLITTANGKIARIETEGFKTVKARGVIVIKLDDNDFVTSAEIVS 658

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + +  + +      F+ D I    RG  GV     ++G +  +    + +G   +  +
Sbjct: 659 KNEKIICISKKGNAFAFNSDNIRLTHRGTQGVSGMKVREGDVL-IKALAVKQGSHLLVVS 717

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
              Y +          KRG  G    K    ++G+ + +
Sbjct: 718 ENGYGKRLEISKVTDLKRGATGYTCYKKSDEKAGEVVDA 756



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 60/462 (12%), Positives = 155/462 (33%), Gaps = 41/462 (8%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELII------AKRIPLLEDIRDESAEDVRIVLFPKNR 318
              IV   + + ++++R    I E +        + I ++   R        I+      
Sbjct: 359 RKEIVRRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKEFNLS 418

Query: 319 SLDPDLLMES-IFMLSDMETR-----FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
            +  + +++  +  L+ +ET      F + +  L       +   + ++         + 
Sbjct: 419 EIQANSILDMKLQKLTSIETEKLEEEFKI-LLALIKDYEDILNSPERVVNIVREEIINLS 477

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +    R   I    E+LK  +   +  + +I I+      K   + R    E ++  I 
Sbjct: 478 LKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILT-----KQGFIKRILQDEYKLQGIG 532

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
               + L   +          L         ++++  + +      I       +  T  
Sbjct: 533 G---KGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLY-----VINAYGIKDTSRTSK 584

Query: 493 GRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSV------DLSALH 544
           G+       +   ++    +   E   +   ++ +  G I  +++          +  + 
Sbjct: 585 GQNVRELINLGETEEILAIKNCNELSVDNYLLITTANGKIARIETEGFKTVKARGVIVIK 644

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
             + D +  A      ++I+ +S  G A+   + N+       + +  +  +     ++ 
Sbjct: 645 LDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIRLTHRGTQGVSGM-KVREGDVLIK 703

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGD 659
           A        LLVVS  G    +E S++    R    +      ++     +  +  V  D
Sbjct: 704 ALAVKQGSHLLVVSENGYGKRLEISKVTDLKRGATGYTCYKKSDEKAGEVVDAITVVQDD 763

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            + +V +  K+L   +D+I E  +  +G+++ S  +  +  V
Sbjct: 764 EILLVSKGAKVLRTLVDKISEQGKDARGMQVLSLDEDKLISV 805


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAIKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/758 (31%), Positives = 384/758 (50%), Gaps = 37/758 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK V +   +++ YL YA+S I  RA+PD RDG KPV RRI++AM +MGL   A ++KSA
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEV+GK HPHGD +VY+++ RLAQ F  RYPL+ GQGNFG+IDGD  AA RYTEAR+
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T+ A  +L  +D + VDF D ++    EP V P+  PNLL NG +GIAVGMAT+IP HN+
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 197 QEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE--SIVESYRLGRGGF 250
            E+ +A   ++D      EI +  L+ +I GPDFPTGGI++++ E   ++ +Y  G+G  
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R +   E++GRG   +++TE+PYQ  K+ LIE+IAEL+    +  + D+RDES     
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + +  + +++  + +++ F + +  L  G  P+++ L   L+ +L HR  
Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVDGE-PRLLTLKQALRVFLEHRIV 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RRS + +     R  IL+GL +A  N+DE+I +IRN    +      + RF L+E Q
Sbjct: 365 VVRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKRFKLSEIQ 424

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL+++LR L  LE  +I+ E   + A+ + ++SLL S K+    +  E+ ++KE + 
Sbjct: 425 AQAILDMQLRRLASLERKKIEEEYREVTAQIKALESLLASAKKIRLAVKEELLKMKEQYG 484

Query: 488 KSTDLGRRRTTFCEVS---RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRRT    +       +      M   + + V +   G +       +  +   
Sbjct: 485 D-----RRRTQIVTLEGETAIHQFLTADEMAPADKVWVGVMADGRVGRTAGEGLPATPA- 538

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
                     L A T   ++L +  G+A  L  G L        G  +     L+    +
Sbjct: 539 -------LHCLRASTRAVLILANAQGQASALSVGALPVVERWQDGMPLHKASALSEGDRV 591

Query: 603 VTAFVYDS-----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           V A   +         LL V+           E+   + +  T +KV+ E+++   V   
Sbjct: 592 VLALALEPDDPKTDRYLLTVTRNALVKKSSLEELPGPSAQKFTLVKVNPEDELLTGVVTE 651

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           G D V ++      + FS  ++  M     GV      +G     +     E    + + 
Sbjct: 652 GQDEVLLLTAGGMAIRFSESEVRPMGLVAAGVLGMKLTEGDQVSGLVLNPQEKD-ILFAC 710

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                         L  R G G L  +   R  + + +
Sbjct: 711 SDGTTGRIAGADFPLQGRYGQGVLATRVS-RGAEVVGA 747


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/752 (29%), Positives = 408/752 (54%), Gaps = 29/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q+AE +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP IS+ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGI-IQGVDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +VVTE+PY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   +F  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +DE+IA+IR        K  +V+ +  T+ Q +
Sbjct: 359 VNRTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  ++K+E   L    ++   +L++       I  E++++++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   A+    ++ M+  E + + ++ +G+I+   + S + S    +  K
Sbjct: 477 ----SERLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D IL+ +  G+   +P   L   R    G+ +  L+ +  ++ I+ 
Sbjct: 533 QGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVTGD 659
            +    +      ++ +  G       + +   TR  K    +KV  ++++  V ++T D
Sbjct: 593 VYNEKNFQQEAFYIMATRNGMIKK-SHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTED 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK--ICEGLTWIDSA 715
            +  V+      L ++ +++ +   R  GV+  + K   + D +     +  G T I + 
Sbjct: 652 QIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLK---VEDFVVMTEVVEAGQTIIMAT 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +  +  +  L KR   G  + K   ++
Sbjct: 709 QRGAIKRIDFKVLQLAKRAQRGITLLKELKKN 740


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 411/759 (54%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  + +   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    +FK
Sbjct: 12  KEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYTE
Sbjct: 72  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 132 ARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ +   I  +Y  G+G   +R
Sbjct: 192 HNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIK-AYTTGKGSVVIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   ++
Sbjct: 251 ARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRIV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP ++M  ++  +++   F +N   L  G +P+ + L  ++ E++ HR+ +L 
Sbjct: 311 LEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNG-IPKQLNLRELISEFIEHRKNILR 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E Q ++
Sbjct: 370 RRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQANS 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N I  EI  +   F    
Sbjct: 430 ILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKF---- 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    ++++E + V+++ +G+I+ +      L  +  K    
Sbjct: 486 --GDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGS 543

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               + D + +AL  +T D +L++S +GK Y + A  +   S    G+ I+ LI+L   +
Sbjct: 544 FDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKE 603

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+             LL+ ++ G    +E         +G   +K+  ++ +     V+
Sbjct: 604 EILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVS 663

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D +  + +      FS + I    RG  GV     ++G +  +    I +G   +  +
Sbjct: 664 RDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREGDML-IKALAIKQGSHLLIMS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
              Y +          KRG  G    K    ++G+ + +
Sbjct: 723 ENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDA 761



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 56/471 (11%), Positives = 155/471 (32%), Gaps = 39/471 (8%)

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------AKRIPLLEDIRDESAED 308
           R  + E       I+   + + +++++    I E +        + I ++   R      
Sbjct: 354 RELISEFIEHRKNILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDAR 413

Query: 309 VRIVLFPKNRSLDPDLLMES-IFMLSDME----TRFPLNMNVLSMGRVPQVMPLDGILKE 363
             I+   +   +  + +++  +  L+ +E          +  L       ++    I+  
Sbjct: 414 ECIMREFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNM 473

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
                  +  +    R   I    E+LK  +   +  + +I I+      K   + R   
Sbjct: 474 IREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILT-----KQGFIKRVLQ 528

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E ++  I     + L   +          L         ++++  + +      I    
Sbjct: 529 DEYKLQGIGG---KGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLY-----VINAYG 580

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSHSVDLS 541
              S  T  G+       +   ++    +   E   +   ++ +  G I  +++      
Sbjct: 581 IKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYLLITTANGKIARIETEGFKTV 640

Query: 542 A------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                  +   + D +  A      D+I+ +S  G A+   + ++       + +  +  
Sbjct: 641 KSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGM-K 699

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----M 650
           +     ++ A        LL++S  G    +E S++    R    +      ++     +
Sbjct: 700 VREGDMLIKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVV 759

Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
             +     D + ++ ++ K+L   +D+I E  +  +G+++ S  +  +  V
Sbjct: 760 DAITVSQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDEDKLVAV 810


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/748 (29%), Positives = 406/748 (54%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 392/796 (49%), Gaps = 64/796 (8%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N L    +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A+  +L+ + E  VDF + ++    EPVV P++ P LL NG +GIAVGMA
Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y  GRG
Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244

Query: 249 GFRVRARWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              VR    +E +  G         IVVTE+PYQV K+  IEK+A+L+   R+  + DIR
Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R    +++++S++  + +++ F   +  L   + P  + L  +L+
Sbjct: 305 DESDRTGMRVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L  R + L R+ +  ++    R+ +L GLLIA  N+D II I+RN       K    +
Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              +++ Q +AIL + +R L  LE+ +++SE   L    E++ +LL+   +    +  ++
Sbjct: 424 ELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-------------------------- 513
           R +K  F         +      S +     ++                           
Sbjct: 484 RSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKEELPTTSSPKTEESPRKTP 543

Query: 514 -------MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
                      E   + I+++G             +  F+       A+       ++++
Sbjct: 544 SLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFR-------AIIGQ-KSELMVI 595

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD----IVTAFVYDSTC--KLLVVSSK 620
           +  GKAY +    +         +  L+     +D    I   FV +      LL+++ +
Sbjct: 596 TDVGKAYPIAVAEIPPLTLQSIPLLSLLPKGAQKDANRVIDAGFVPNDPHGYDLLLLTQQ 655

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ-- 677
           G    V+ SE+   T +G   +K+   +++  V     G  V +     ++L + +    
Sbjct: 656 GRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVVIAISGGRILRYPVTDEV 715

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           IP M R  +G +    +  G   V C  +      +  +   Y +  +     LGK G +
Sbjct: 716 IPLMGRSAQGNQALKLR-YGEEVVNCVTLHSQGEVLLISSLGYGKRLSLTELRLGKLGDL 774

Query: 737 GSLVPKGFPRSGKFLS 752
           G+   +   ++ K   
Sbjct: 775 GTQCLQFTQKTDKLAG 790


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/627 (35%), Positives = 367/627 (58%), Gaps = 32/627 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  +++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E+G+   +A KK
Sbjct: 5   EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAHKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEA
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++E +L  +D++ VD +  +++   EP V P++ P LL NG SGIAVGMAT++P H
Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +A I+N +I I++L+++I  PDFPTGG  +   + + E++  GRG   +RA
Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGG-TIYGYDGVKEAFHTGRGRIVMRA 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +EEV  G  CI+V EIPYQV K+ +I+K A+L+  K++  +  IRDES  +   +++
Sbjct: 244 KANIEEV-NGRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIVY 302

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R   P++++  +F  + +++ F +N   L  G  PQ++ L  ++  ++ HR EV+ R
Sbjct: 303 VLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNG-RPQLLNLKELIHYFVEHRHEVVVR 361

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++  + R  IL+GL+IA  NIDE+IA+IR   N D+ +  ++ RF L+E Q  AI
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIERFKLSEIQAKAI 421

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + +RLR L  LE+ ++++E D L+   E +  +L+   ++ + I  E+  VK+ +     
Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDILDKKDRRMDIIKEELEVVKDKY----- 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
            G  R +  E +  D +   + MI  E + + IS+ G+I+              V   A 
Sbjct: 477 -GDERRSNIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
             +  D L+          +L  +  GK + +    +  G     G AIQ LI++  +  
Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDK 593

Query: 602 IVTAFV--------YDSTCKLLVVSSK 620
           ++            Y ++  +++ +  
Sbjct: 594 VMAFICTQDLKDDDYINSHYVIMATKN 620


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/751 (27%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/760 (32%), Positives = 419/760 (55%), Gaps = 32/760 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V++   +E  +L YA+S +  RAIPD RDG KPVHRRI++ MSE+G+  G  +KK
Sbjct: 62  EGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGTQYKK 121

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ G GNFG+IDGD  A+ RYTEA
Sbjct: 122 SARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMRYTEA 181

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM +++  +L+G+ ++ VDF D Y+  + EP V PS+FPNLL +G+ GIAVGMATSIP H
Sbjct: 182 RMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATSIPPH 241

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E  +A +A   N +I++E+LL+YI GPDFPTGG+I+   + I+E+Y+ GRG   +R+
Sbjct: 242 NLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVIL-GTKGILEAYKTGRGQIPLRS 300

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + ++    + I++T+IPY ++KS ++E I++L     +  + D+RDES  D   ++ 
Sbjct: 301 EYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIRIVI 360

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +P++++  +F  S + T+F +NM  L   + P+++ L  +L  +L H++EVL R
Sbjct: 361 DIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNTQ-PKLLTLKDVLDVYLEHQKEVLTR 419

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
             +F ++     + IL+GLL+A  NID+++A+I++          ++ ++SL+E Q  AI
Sbjct: 420 ELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEKYSLSEEQAKAI 479

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           LN+RL  L  L   ++ +E++ L  E ++I S+L+S ++  N +  ++ ++KE +  S  
Sbjct: 480 LNMRLGRLTGLSYSKMTNEIEELRKEIQRITSILDSEQELVNNVIADLEKIKEKYGDSRK 539

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                      + A  +  ++ +I ++ I +  +  G+++              +  + +
Sbjct: 540 T-------SIDASASSSINEEQLIPRKDIVITATVDGFVKRVNLEEYNLQNRGGMGSTGM 592

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH--N 599
               GD++   +  +T   + L S  GK Y L A  +     +  G +   L++LN   N
Sbjct: 593 KTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQEADKKSKGNSFANLVELNKELN 652

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVK 655
           + I+       Y+S   LL V+ KG                G    K+   E+++K V+ 
Sbjct: 653 EKIIRILPVDSYESNLHLLTVTKKGIVKKTALDNFKKVRSNGIKAFKLKDEEDELKDVIL 712

Query: 656 VTGDHVAVVGENRK-LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
           VT   + +V  N K ++ F   +I   +R   GV+     DG           EG   + 
Sbjct: 713 VTNSDLVLVANNHKNVVKFEASKIRSQARNSIGVQGMKL-DGKYEVQSISSSKEGEFVLT 771

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                + +  +     L  R   G        ++G  + +
Sbjct: 772 IGEFGFGKLTDHKEYSLTNRNAKGKTSINP-AKAGNLVFA 810



 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 90/251 (35%), Gaps = 15/251 (5%)

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++  + +   A +I+E  +  SK            E++      L     E     + ++
Sbjct: 616 SNLGKVYKLRAYKIQEADKK-SKGNSFANLVELNKELNEKIIRILPVDSYESNLHLLTVT 674

Query: 526 NRGWIRSL------KSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            +G ++        K  S  + A   K E D LK  +    +D +L+ +         A 
Sbjct: 675 KKGIVKKTALDNFKKVRSNGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNVVKFEAS 734

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV--EESEIIANTR 636
            + S   +   +Q +  L+   ++ +         +L +   G   +   +E  +     
Sbjct: 735 KIRSQARNSIGVQGM-KLDGKYEVQSISSSKEGEFVLTIGEFGFGKLTDHKEYSLTNRNA 793

Query: 637 KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           KGKT +  +    +     V   D + ++      +   +DQ+   SR  KGVR+    +
Sbjct: 794 KGKTSINPAKAGNLVFAKFVNPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNE 853

Query: 695 GGISDVICFKI 705
           G    +I  ++
Sbjct: 854 G--DKIISVEV 862



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 27/143 (18%)

Query: 530 IRSLKSHSVDLSALHF------------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           IRS   +S+ +  +              KEG+ +                  GK      
Sbjct: 736 IRSQARNSIGVQGMKLDGKYEVQSISSSKEGEFVLTIGE----------FGFGKLTDHKE 785

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANT 635
            +L +    G+     I+     ++V A   + T +LL+++++GN    +     + +  
Sbjct: 786 YSLTNRNAKGK---TSINPAKAGNLVFAKFVNPTDELLIITAQGNTIRTQLDQVSVFSRN 842

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG 658
            KG   +K++  +K+  V  +  
Sbjct: 843 SKGVRIIKLNEGDKIISVEVIKN 865


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 226/751 (30%), Positives = 408/751 (54%), Gaps = 27/751 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L+++I GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPTG-GIIQGIDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++ ++L+      + I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHDALLSVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + +S+ G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ +V 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
            +    +++    ++ +  G        +    TR  K    +KV   +++  V+++  D
Sbjct: 593 VYNEKDFNNNAFYVMATKNGMIKKSSVPQF-KTTRFNKPLVGMKVKDHDEIVNVIRLESD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI-CFKICEGLTWIDSAG 716
            +  V+      L +S D++ +   R  G++  + KD     +       + +  I   G
Sbjct: 652 QLVTVLTHKGMSLTYSTDELSDTGLRAAGIKSINLKDEDHVVMTESVSDSDSILMITQRG 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                S   L   + KR   G  + K   ++
Sbjct: 712 AIKRISYKVLQ--VAKRAQRGITLLKELKKN 740


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/768 (30%), Positives = 413/768 (53%), Gaps = 30/768 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D + N ++LV   +K +++   +++ +L+YA+S I  RA+PD++DG KPV RRI++ M+E
Sbjct: 6   DLLKNEDSLV-GKIKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNE 64

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+   +++KKSARIVG+V+GK HPHGD S+Y++++R+AQ F  RYPL+ G GN G+IDG
Sbjct: 65  LGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDG 124

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+AAA RYTE +M++++  +L+ +D++ VDF + Y+  + EPV  PS FPNLL NG++GI
Sbjct: 125 DNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IPSHN+ E+ +A +  IDN EI  E L+++I GPDFPTGG I+     + E+Y
Sbjct: 185 AVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEIL-GISGLKEAY 243

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG   VR++  +    +    I++ EIPYQ++K+ LIEKIA L+  K I  + D+RD
Sbjct: 244 ETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRD 303

Query: 304 ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           ES       ++    + ++P +++ +++  + ++T F  NM  L  G VP+++ L  +L+
Sbjct: 304 ESNNSRGMRIIIELRKDVEPKIILNNLYKHTQLQTSFCFNMIALVNG-VPKIVSLKNMLE 362

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
           E+   R +V+ R+  F +    ++  ++  L I   +I++++ II+N +  K    +   
Sbjct: 363 EFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIMI 422

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            ++  E Q  AIL + L+ +  LE  ++  E + L  +  + ++++NS  ++   +  E+
Sbjct: 423 NYNFDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQTKKEKILKKEL 482

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------- 532
            ++K  F        +R +    +        +++I KE I + ++N+G+I+        
Sbjct: 483 LKIKNQFQD------KRKSIIS-NEQYLTVENESLINKETILITVTNKGYIKRLNLDTYK 535

Query: 533 -LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEA 589
                   +S L  +E D L+  L   T D  L  +  GK Y L    +   S    G  
Sbjct: 536 KQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYSKGIP 595

Query: 590 IQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           +  L+ L  N+ + +        +    L++V+ KG        +     R GK    + 
Sbjct: 596 LVNLLPLEKNEFLTSLTSVKDFKEEKNYLVLVTKKGLIKRNSLKDFENVRRNGKIAAVLK 655

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
           + +++  V + TG   + +   + K + F+  +I +  R   GVR    K       +  
Sbjct: 656 NNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQTGRKSSGVRGIKIKTEEEIIGMTV 715

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              E    +    + Y +           RGG G+   K   R+GK +
Sbjct: 716 VDSEKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRNGKLV 763



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 15/210 (7%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
           T  +   E++   V+++ +G I+                A   K  D +           
Sbjct: 612 TSVKDFKEEKNYLVLVTKKGLIKRNSLKDFENVRRNGKIAAVLKNNDEVLFVSRTTGQQD 671

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKG 621
           I+L ++DGKA       +         ++  I +   ++I+   V DS  + +LV++ KG
Sbjct: 672 IILAASDGKAIRFNEFEIRQTGRKSSGVRG-IKIKTEEEIIGMTVVDSEKQNILVITEKG 730

Query: 622 NAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
              I + +E     R GK    +     + + ++L+     + + +  ++ K++     Q
Sbjct: 731 YGKITKANEYRNQIRGGKGTKTLKITSRNGKLVRLLTIYRNEELIIFSDHGKVVRIDTKQ 790

Query: 678 IPEMSR--GKGVRLQSYKD-GGISDVICFK 704
           IP       +G  L S ++   +S V   K
Sbjct: 791 IPLTKSKVTQGNILISLEESDKVSSVALIK 820


>gi|332360837|gb|EGJ38643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK49]
          Length = 842

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 394/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 29  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 88

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 89  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 148

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 149 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 208

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR++
Sbjct: 209 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSK 267

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 268 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 327

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 328 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 386

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 387 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 446

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 447 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 500

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 501 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 560

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 561 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 620

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 621 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 680

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +   G   
Sbjct: 681 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQRGSLK 740

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+   +  R   G  V +
Sbjct: 741 RMAVADI--PVTSRANRGLQVLR 761



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 29/176 (16%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 590 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 649

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 650 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 709

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L 
Sbjct: 710 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELK 764


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 412/747 (55%), Gaps = 37/747 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + L    E  YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL  GA   KSAR+V
Sbjct: 6   LELAPYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVV 65

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEA +T +
Sbjct: 66  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPL 125

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AEL+L  +++  VDF   Y+    EPV  P++ P +L NG SGIAVGMAT IPSHN+ E+
Sbjct: 126 AELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEV 185

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+AL+  P + +  L+++I  PDF  GG I+   + +   Y  G+G  RVRAR+ ++
Sbjct: 186 TQAAVALLKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQID 245

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDI 301
           ++ RG W ++V+E+P     ++++ +I E                        + L+E +
Sbjct: 246 KMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKV 305

Query: 302 RDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           RDES     VR+V  PK+  ++P+  + ++   + +E    +N+ ++ M   P    L  
Sbjct: 306 RDESDSEHPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKT 365

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+EWL +R   + RR   R+ A+++R+ IL G +IA+L+IDEII +IR  D+PK  ++ 
Sbjct: 366 ILQEWLDYRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQDLIR 425

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F LTE Q D IL +RLR L +LE  ++KSEL+ L  E+  + +LL+    +   I  E+
Sbjct: 426 QFGLTEIQADDILEIRLRQLARLEGVKLKSELNELREEQGSLKNLLSDEDAKKKLIIKEM 485

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +   + F  +      R T  E +     T        EPIT+++S +GWIR+   H VD
Sbjct: 486 KADAKQFGDA------RRTLVEAAERATLT---QTTADEPITLILSQKGWIRARAGHDVD 536

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
           LS + FKEGD L+  L   T   +++L   G++YT+   ++  GRG G  +  LI++   
Sbjct: 537 LSQIAFKEGDDLQQVLQTRTVQSVVVLDDLGRSYTINPADVPKGRGDGVPLGSLIEIQAG 596

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
              +      +    L+  S G  FI +  ++ + ++ GKT + + + E +   V V   
Sbjct: 597 AKALAMLSGSNDDHYLLAHSGGYGFICKLEDLHSRSKTGKTVMMLEAGETVLPPVPVYLS 656

Query: 657 ----TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                   V +  E ++LL F I ++  M++G+G++L   +      +I     E  T  
Sbjct: 657 ALINPDCKVVLATEQKRLLAFPIGEMKIMAKGRGLQLIRLQGNDKLILINVLKTENCTLD 716

Query: 713 DSAGRSYNRSEND-LLGWLGKRGGVGS 738
               R     E   L+  + KRG  G 
Sbjct: 717 IVGKRGGESKEIVHLVDIINKRGHKGK 743


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 206/756 (27%), Positives = 387/756 (51%), Gaps = 28/756 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E ++ +S    + +R+  Y+   I++RA+PD+RDG KPV RRI++AM          
Sbjct: 1   MSQEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  YRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ + ++ VDF   +++ + EP V P++FPNLL NG +GI+ G AT I
Sbjct: 121 TEARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +A + L+ +    +E+LL+ + GPDFPTG I ++  ++I ++Y+ G+G   
Sbjct: 181 PPHNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGAI-IQGIDAIQQAYKTGQGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           + ++  +E +  G   IVVTE+PY+V KS+LI+++ E+ I +++  + D+RDES  +   
Sbjct: 240 LVSQTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R +D   ++  +   +D++  +  NM  ++    P+++ L  +L+ +++H++EV
Sbjct: 300 LVVELKRDVDAKGILTYLLKHTDLQVNYHFNMVAINKR-RPELVNLQTMLEAYISHQQEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           L RR+ + +    +R+ I+ GL+     +DE+IA IR  D   + K  +V+ F  +  Q 
Sbjct: 359 LTRRTQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLVAEFDFSMEQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L        ++L++ +     +  E++ +K+ F+ 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQERLELNERILMYQNILSNPEILNKVLINELKAIKKDFAT 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHF 545
                  R +  +            +I  E + V ++  G+++     S    DL++L  
Sbjct: 479 P------RRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMKRTSMRSFASSDLNSLGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           ++ D         T   ++++++ G    +P   L     +  G  +     L   +  V
Sbjct: 533 RDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEVKWKDLGVHLSQNYQLQDGERFV 592

Query: 604 TAFVYD-STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTG 658
            AFV      K+++ +  G       S         TR  K    +  ++++  V  +  
Sbjct: 593 NAFVASQEEHKVILATKAGMIKQTPLSAFTTYRSYKTRTAKAMNLLDDQDEVVAVECLKA 652

Query: 659 D---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKICEGLTWI 712
                V ++      L +S D + EM  + KGV     K+    ++ ++  +  +     
Sbjct: 653 GQNYEVVLLSRRSYCLRYSADLVSEMGLKAKGVTAIKLKEEDQVVACLVVNQEAKRPQLF 712

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               R   +  +  +     RG  G L+ K   ++ 
Sbjct: 713 ALTQRGNVKRSDLTVIPELGRGSRGVLLLKEL-KTN 747


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/743 (28%), Positives = 385/743 (51%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E + GPDFPTGGI ++    I ++Y  G+G   VR+R
Sbjct: 186 LSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGI-IQGAAEIKKAYETGKGRVVVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 245 TEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRKSIIIKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 364 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFAGP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+I+     S   S+L     ++ D
Sbjct: 481 ---RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTAF 606
            L     A TTD +LL +  G     P   L     +  GE +   I +   ++ ++ A 
Sbjct: 538 HLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAITNFAADEMVIYAE 597

Query: 607 VYDSTCKLLVV--SSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           +  S  + L    +  G     E  E++   +   K   + K+  +++++  +  +  + 
Sbjct: 598 LIQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAADDRIIAIAPIVMED 657

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +    L FS  +IP    +  GV+  + K        C    +    +    R  
Sbjct: 658 LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVLTQ--RGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G LV +
Sbjct: 716 LKRVAIADIPQTSRANRGLLVLR 738


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/755 (29%), Positives = 391/755 (51%), Gaps = 30/755 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             ++  ++   + + YL YA+S I  RAIPD+RDG KPV RR++++M E+G+     +KK
Sbjct: 2   HIMEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVGE +GK HPHGD ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGDS AA RYTEA
Sbjct: 62  CARIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+TQ+AE ++  +DE+ V FR  ++   SEP   PSK PNLL NG+SGIAVGMAT++  H
Sbjct: 122 RLTQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EIC+A L  +D+ +  ++ LL+Y+ GPDFP GGI+   ++ ++E+YR GRG   V+ 
Sbjct: 182 NLTEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQG 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
                E  R    +++  IPY V K+ L++ IA+L   + I  + DI+DES  +   ++ 
Sbjct: 241 EVDATEDRR----LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVI 296

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                    L++  ++  + +E+   +   VL  G  P++M L  ++  ++ HR +V+ R
Sbjct: 297 KVRDDDIKPLVLNQLYEHTALESSIGIINLVLV-GNQPKLMNLKDLIDSFIDHRLDVILR 355

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           RS FR+     R+++L G+L A  +ID ++ I+++            + F L + Q+ AI
Sbjct: 356 RSQFRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAI 415

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +RL+ L   E+  ++SE+  + AE + ++ ++ S  ++ ++   EI E+++ +     
Sbjct: 416 LEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRR 475

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544
              +     E          + +I  E   +++S  G ++ +++                
Sbjct: 476 SRIKFRGITER-------TMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTS 528

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K  DS+K  +H  + D +   +  G+ +   A  +   S    G +    + L   + +
Sbjct: 529 MKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERV 588

Query: 603 VTAFVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
                        L++V+  G+        +  +   G   + +  ++++  V    GD 
Sbjct: 589 TEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDK 648

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           ++ V+    K  +F+  +I E  R   GVR     +G    +  F +      +  + + 
Sbjct: 649 NMFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTI-LTAFVVNSDEDILSISEKG 707

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           Y +  N     +  RG  G +V +   R+G+   +
Sbjct: 708 YGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSHA 742



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 14/207 (6%)

Query: 510 LQQAMIEKEPITVVISNRGWIRS------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +A  EK    ++++  G ++         S S  L  +  ++ D L    +      +
Sbjct: 591 IMKAPPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNM 650

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            +LS+ GKA       +         ++ +  LN    I+TAFV +S   +L +S KG  
Sbjct: 651 FVLSSKGKASVFNTSEIRETGRTSMGVRSM-RLNEGDTILTAFVVNSDEDILSISEKGYG 709

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIP 679
                SE   + R     +     E+   V         D V +V  N K +     +IP
Sbjct: 710 KRTNISEFPIHHRGSSGVMVYRDTERTGRVSHAIPVRDEDEVILVSMNEKTIRIKASEIP 769

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKI 705
           E SR   GV+L      G   VI   +
Sbjct: 770 ETSRVTSGVKLMDI--DGDDRVIAAAV 794


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKKLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 224/748 (29%), Positives = 405/748 (54%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGRVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV   +K+  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/769 (32%), Positives = 398/769 (51%), Gaps = 35/769 (4%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D +  +       +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM++
Sbjct: 9   DFLDENQNHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMND 68

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDG
Sbjct: 69  LGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDG 128

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RYTEAR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GI
Sbjct: 129 DGAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGI 188

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVES 242
           AVGMATSIP HN++E+  A  A IDN +I+I+++L+ YI+GPDFPTG ++    + + E 
Sbjct: 189 AVGMATSIPPHNLKEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTK-MREG 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ GRG   +RA+   EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIR
Sbjct: 248 YKTGRGSVIIRAKIDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIR 306

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   ++    +  +PD+++  ++  + +++ F +N+  L+      +  L  I+K
Sbjct: 307 DESNYEGIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLD-LKTIIK 365

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419
            ++  +  V+ +RS F    + +R  IL+ L IA  N+D++I II+N    D+ K  + +
Sbjct: 366 NYVEFQVNVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTN 425

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +++  E Q  AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++
Sbjct: 426 KYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTKEEQDNVLKNQL 485

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            E+ + F        RRT   +          + +I      +++S  G+IR +      
Sbjct: 486 NEIADKFGD-----NRRTELIDEEL--INIEDEELIPDLKWMILLSQEGYIRRINPDEFR 538

Query: 540 LSALHFKE-------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
           +     +         D + IA      D +L  +  GK Y     N+   S    G  I
Sbjct: 539 IQKRGGRGVSVNVEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPI 598

Query: 591 QLLID-LNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
              ++ L     I       +       L  V+ KG     + SE     R GK  + + 
Sbjct: 599 VNFLNDLTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLR 658

Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVI 701
             +++  V   TG D + +  E+ K++      +   SR G GVR    +  D  +  + 
Sbjct: 659 ENDQLISVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLEANDVVVGAIS 718

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            FK+         + +   +        +  R G G  V     R+GKF
Sbjct: 719 SFKLTH---ITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            EK      ++ +G I+  K             A++ +E D L         D I + + 
Sbjct: 621 KEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLISVFATTGQDTIFIANE 680

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK   +    +      G  ++ L  L  N  +V A        +  VS+KG       
Sbjct: 681 SGKVIRIKESVVNPQSRVGSGVRAL-KLEANDVVVGAISSFKLTHITTVSNKGLFKKTPI 739

Query: 629 SEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +   + R GK    ++  ++      ++     D + ++  +  L+   +  IP +SR 
Sbjct: 740 DDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRN 799

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+     D    + I  +
Sbjct: 800 ASGVKAIRLADNQEINAITLE 820



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 2/182 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     +S           I  E   V+      +     
Sbjct: 638 RTKISEFENINRNGKKAINLRENDQLISVFATTGQDTIFIANESGKVIRIKESVVNPQSR 697

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  +  D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 698 VGSGVRALKLEANDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 757

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                          T  +L++SS GN    + S I + +R   G   ++++  +++  +
Sbjct: 758 NQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAI 817

Query: 654 VK 655
             
Sbjct: 818 TL 819


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/748 (29%), Positives = 406/748 (54%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    + +    ++ +  G       S+       K    +KV  ++++  VV++  D 
Sbjct: 593 VYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/753 (28%), Positives = 393/753 (52%), Gaps = 30/753 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+K
Sbjct: 5   QKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y++L R++Q +  R PL+   GN G++DGD AAA RYTEA
Sbjct: 65  SAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  +L+ +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ ++E+L+ ++ GPDFPTGGI ++ ++ IV++Y  GRG   VR+
Sbjct: 185 NLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGI-IQGKDGIVKAYETGRGRIVVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +      I VTEIPY+V K++L++KI E+ + K++  L ++RDE+  D   +  
Sbjct: 244 KTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIAI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D   ++  +F  ++++  +  NM  ++  R   V  L  IL  +L H+R V+ +
Sbjct: 304 ELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHV-GLKTILSAYLEHQRNVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ + +Q    R  I+ GL+ A   +D++I  IR        +  +V  +  +E Q DAI
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVEAYDFSEKQADAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q+++E   L AE E+   +L   K   + +  E++ V +      D
Sbjct: 423 VALQLYRLTNTDVTQLEAESAKLSAEIEQDHKILAEPKTLNSVLRQELKAVAK------D 476

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
               R T  +    D        +  E + V++S+ G+++     S    D +    K+G
Sbjct: 477 YRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTASDPTDNGLKDG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D         T + +++ ++ G     P   +     +  GE I   I L  +++IV  F
Sbjct: 537 DYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATF 596

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVS-SEEKMKLVVKVT-- 657
            +       + L+ +S G       +++    T K +  +  K+  +E ++  V  +T  
Sbjct: 597 AFKTLKEPGRFLIATSDGYIKQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEP 656

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
               + ++ +N   L + +D++     R  GVR    +D   + ++      + +  I  
Sbjct: 657 VEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALVTDNKTIALITQ 716

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            G     +  +L   +  R   G +V +   R 
Sbjct: 717 RGAFKRLAMKELS--VTSRARRGVIVLRELKRD 747


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 384/743 (51%), Gaps = 23/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G     AF+K
Sbjct: 5   ERFQDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  R+ L+   GN G++DGDS AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +D+  VDF   +++ D EP V P++FPNLL NG++GI+ G AT IP H
Sbjct: 125 RLSAISSELLRDIDKRTVDFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            + E+ +A L  +DNP+ ++ +L+  I GPDFPTGGI ++  + I ++Y  G+G   VR+
Sbjct: 185 ALHEVLDAVLMRMDNPQATVAELMTVIKGPDFPTGGI-IQGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV+TEIP++V K+ +I+KI +    +++  + ++RDES      ++ 
Sbjct: 244 KAEIEPLKGGKEQIVITEIPFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +    ++  ++  +D++  +  NM  +   R P +M L  +L  ++ H++EV+ +
Sbjct: 304 ELKKDVQAQGILSYLYKNTDLQVSYNFNMVAI-YKRRPTMMTLQTMLDAYIEHQKEVITK 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS F +Q    R+ I++GL+ A   +D++I  IR+       K  +++ F  +E Q +AI
Sbjct: 363 RSEFDLQKASDRMHIVEGLMKALSILDKVIKTIRSSTDKRDAKNNLIAAFDFSEAQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   ++ E D+L     ++  +L S  +  N I  E+  +++ F++   
Sbjct: 423 VSLQLYRLTNTDITDLQKEEDSLKKTIAELTGILTSSTKLKNVIKKELANIRKQFAEP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R +  E    +    ++ MI  E + V ++  G+++   + S   S       KE 
Sbjct: 481 ----RRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVKRTSTRSYAASNGKDFAMKET 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D L    + +T   IL+ +T G     P   L     +  G+ +  +I L+ N+ ++  +
Sbjct: 537 DHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDIKWKDLGQHLSSIIQLDANESVLAVY 596

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
               +D+   +L VS  G        +  I    +    + + S + M     VT +   
Sbjct: 597 PFENFDADASILTVSKLGQVKRSALKDYQIQRYSRTVKTMNLKSGDAMIYAGLVTKETEL 656

Query: 663 VVGENR-KLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSY 719
            +G N+   + F ++++P    R  GV+  + K D      I          +    R  
Sbjct: 657 FIGTNQAYGVRFPLEEVPLTGLRTGGVKGVNLKGDDEAVSAILIDPEVKQELVLVTHRGA 716

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +         G R   G ++ +
Sbjct: 717 AKKMKLDEFESGSRAKRGVVMLR 739


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANSELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH 742

Query: 602 --IVTAFVYDSTCKLLVVSS 619
              V   V+       + ++
Sbjct: 743 RVFVAGPVFGEAVDFDLFTT 762


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKV 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFDFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVQNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDQPNSSVDDLLAVIKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + +RF  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSARFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVIPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAIKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P ++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPCLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +   G   
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQRGSIK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+   +  R   G  V +
Sbjct: 715 RMAVADI--PVTSRANRGLQVLR 735



 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--- 598
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 599 ---------NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKG 638
                     + +      T         L V+S+KG A+ +  ++      T  G
Sbjct: 743 RVFAAGPVFGETVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADFSLSERTSNG 798


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 253/813 (31%), Positives = 414/813 (50%), Gaps = 74/813 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     +   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNFLCGEVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +  E +L  V E  VDF   ++    EP V P++ P L+ NG+SGIA
Sbjct: 121 PAAMRYTETRLATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNP++  +KL++ I GPDFPTGG I+ + E I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIAT-EGIKEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + 
Sbjct: 240 SGRGSIVMRGVAKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  +   V+    R   P++++ +++  +D+ ++F      L   + P+ + L  
Sbjct: 300 DIRDESDREGIRVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQ-PRQLSLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           IL+E+L  R + L RR    ++  +RR  ++ GLL A   +DE+I I+RN       K  
Sbjct: 359 ILEEFLGFREQTLLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + +R   +  Q DAIL + LR L  LE  +++ E   L A+ +++  LL+   +    + 
Sbjct: 419 LETRLDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVS---------------RADKATLQQAMIEKEPIT 521
            E+R +K  +S         +   E                   +   L+  +   E   
Sbjct: 479 KELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETL 538

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKE-------GDSLKIALHAHTTDRILLLSTDGKAYT 574
           V ++ RG++R +  H  +LS    +E        D    +    T + +++++  GKAY 
Sbjct: 539 VEMTLRGYVRRVTPH--NLSRPQSREDITIEAIDDFPVTSYLTTTAETLVIINRMGKAYP 596

Query: 575 LPAGNLLSG--RGHGEAIQLLIDLNHNQD--------IVTAFV----------------- 607
           L   ++ S   +  G  +  L+  +  +D        IV AF+                 
Sbjct: 597 LNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDADQ 656

Query: 608 ----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVA 662
               +     L+++S++G    +  ++ +  + +G T +K+   +++    +  TGD V 
Sbjct: 657 RERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVV 716

Query: 663 VVGENRKLLI--FSIDQIPEMSR-GKG-VRLQSYKDGGISDVICFKICEGLT---WIDSA 715
           +     +LL    + DQIP M R  +G V  +  K+  +   I       L     +  +
Sbjct: 717 LATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTGELNNKFILLVS 776

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + Y +  +       +RGG+G+ + +   R+ 
Sbjct: 777 EQGYFKRISLQSLQRSRRGGIGTQMLQFHSRND 809


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 411/759 (54%), Gaps = 28/759 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E V  + +   +   YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    +FK
Sbjct: 12  KEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFK 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F  RYP++SGQGNFG+IDGD  AA RYTE
Sbjct: 72  KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM ++AE ++  +D+  V+F+  Y++   EP V P+ FP LL NG+SGIAVGMAT++  
Sbjct: 132 ARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+C+A + ++++ ++SI  L+  I GPDFPT   I+ +   I  +Y  G+G   +R
Sbjct: 192 HNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIK-AYTTGKGSVVIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE    +  I++T+IPY V KS L+ KIA LI  +++  + DIRDES  +   ++
Sbjct: 251 ARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRIV 310

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  DP ++M  ++  +++   F +N   L  G +P+ + L  ++ E++ HR+ +L 
Sbjct: 311 LEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNG-IPKQLNLRELISEFIEHRKNILR 369

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  IL+GL IA  NID +I IIR        +  ++  F L+E Q ++
Sbjct: 370 RRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQANS 429

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL+++L+ L  LE  +I+ +   +LA  +  + +L S  +  N I  EI  +   F    
Sbjct: 430 ILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKF---- 485

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    ++++E + V+++ +G+I+ +      L  +  K    
Sbjct: 486 --GDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGS 543

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               + D + +AL  +T D +L++S +GK Y + A  +   S    G+ I+ LI+L   +
Sbjct: 544 FDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELINLGEKE 603

Query: 601 DIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           +I+             LL+ ++ G    +E         +G   +K+  ++ +     V+
Sbjct: 604 EILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVS 663

Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D +  + +      FS + I    RG  GV     ++G +  +    I +G   +  +
Sbjct: 664 RDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREGDML-IKALAIKQGSHLLIMS 722

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF-PRSGKFLSS 753
              Y +          KRG  G    K    ++G+ + +
Sbjct: 723 ENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDA 761



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 65/164 (39%), Gaps = 7/164 (4%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           +   + D +  A      D+I+ +S  G A+   + ++       + +  +  +     +
Sbjct: 648 MKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGVSGM-KVREGDML 706

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVT 657
           + A        LL++S  G    +E S++    R    +      ++     +  +    
Sbjct: 707 IKALAIKQGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDAITVSQ 766

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            D + ++ ++ K+L   +D+I E  +  +G+++ S  +  +  V
Sbjct: 767 DDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDEDKLVAV 810


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTREEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTREEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDRVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A++ K+ D L  A  A+T D + LL+  G    +   ++   S    G  +   +    +
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 600 QDIVTAFVYDSTCKLLVVSS 619
           +  V   V+       + ++
Sbjct: 743 RVFVAGPVFGEAVDFDLFTT 762


>gi|332366844|gb|EGJ44585.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1059]
          Length = 816

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 394/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 SLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANTIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++ A 
Sbjct: 535 RLIFVSSAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 31/200 (15%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYAELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A++ K+ D L  A  A+T D + LL+  G    +   ++   S    G  +   +    +
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 600 QDIVTAFVYDSTCKLLVVSS 619
           +   +  V+  T    + ++
Sbjct: 743 RVFASGPVFGETVDFDLFTT 762


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 391/743 (52%), Gaps = 25/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM + G  F  AF+K
Sbjct: 6   QRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEKAFRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R PL+   GN G+IDGD AAA RYTEA
Sbjct: 66  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++ L+L+ +D++ VDF   +++  +EP V P+ FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATDIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +A +  +++ +  ++ LL +I GPDFPTG I ++  + I ++Y  G+G   VR+
Sbjct: 186 NLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAI-IQGIQEIKKAYATGKGRIIVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IVVTEIPY+V K+ L++KI +L I K+I  + ++RDE+  +   ++ 
Sbjct: 245 KAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +  ++++  +F  +D++  + +NM  +     P +M L  ++  ++ H++EV+  
Sbjct: 305 ELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNK-RPVLMGLMDLIDAYIQHQKEVVTN 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           RS++ ++    R  I++GL+     +DE++ +IR        K  ++  F  +E Q +AI
Sbjct: 364 RSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMVAFEFSERQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   ++ E + L     ++  +L+S  +    I  E+++V++ F     
Sbjct: 424 VMLQLYRLTNTDVTALQQENEELSKTILELTEILSSETKLLKVIQTELKQVRKDFKTE-- 481

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEG 548
               R +  E    +    +  MI KE + V ++  G+++     S + +       K+G
Sbjct: 482 ----RRSQIEEQIQEIKIDETDMITKEDVIVAVTKDGYVKRTSIRSYNATKSEMPVMKDG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L   L   T   +L+ +  G    LP   L     +  G+ +  L+ ++  + ++  F
Sbjct: 538 DELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVTIDSEEKVIAVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV-TGDHV 661
               + S   L   ++ G        +  ++   +    + V  ++ +  VVK  + + V
Sbjct: 598 AISDFKSEECLFFTTANGMIKKTRLGDFEVSRYNRAMMAMAVKEDDVLISVVKAPSPNDV 657

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSY 719
            +V +   LL FS ++I     +  GV+  +  KD  +  V+     + L  +   G   
Sbjct: 658 IMVTKQGYLLKFSDEEIAITGLKAMGVKGIAIGKDDQLIKVVLANANDELLLLTQRGNIK 717

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
                D+   L  R   GSL  K
Sbjct: 718 KLKVKDIA--LSSRNKKGSLGIK 738


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/751 (27%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
              V     +    ++ V+  G     E ++  +    +    + +   +++  +    G
Sbjct: 593 WVTVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKGDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/741 (28%), Positives = 389/741 (52%), Gaps = 26/741 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  +   +     + 
Sbjct: 240 NLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  RS F 
Sbjct: 300 ADEQTILNYLFKYTDLQINYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKDIIVARSKFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+ L+L
Sbjct: 359 KEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   +++E   L      +++++   +  +N +  E+REVK+ F      G  R
Sbjct: 419 YRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKF------GNPR 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKI 553
            +  +           ++I +E   V ++  G+I+     S + S    L  ++ D +  
Sbjct: 473 LSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDDDDVIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDI--VTAFVY 608
             +A TT  +L+ +  G     P   L   R    GE + Q + +   +++I  V    +
Sbjct: 533 IQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDH 592

Query: 609 DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVV 664
                    +S G     E  ++    +   K   + K+   ++++  +  +  D V ++
Sbjct: 593 FEEGTYYAATSLGQIKRFERRDLTPWRSYKSKAVKYAKLKGDDDQVIRISPIKLDDVMLI 652

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
                 L F+I+++P +  +  GV+  + K+G           + +  +   G     S 
Sbjct: 653 TARGYALRFNIEEVPIVGPKAAGVKAINLKEGDSLAAAFIANTDSIYILTQRGSLKRMST 712

Query: 724 NDLLGWLGKRGGVGSLVPKGF 744
           N +   +  R   G  V +  
Sbjct: 713 NLI--PVTSRAKRGLQVLRDL 731


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/733 (30%), Positives = 390/733 (53%), Gaps = 26/733 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +L 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   +EKL+E++ GPDFPTG I ++  + I ++Y  G+G   VR+R  +E++  G 
Sbjct: 181 MIDHPTAKLEKLMEFLPGPDFPTGAI-IQGADEIKKAYETGKGRVVVRSRCEIEQLKAGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 KQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  ++  +D++  +  NM  +      QV  L  IL  ++AHRRE++  RS F  +  ++
Sbjct: 300 LNYLYKYTDLQINYNFNMVAIDNFTPRQV-GLQKILSSYIAHRREIIIARSKFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E   L  + + + +++   +  +N +  E+REVK+ F      G  R +  + 
Sbjct: 419 DIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQF------GNPRLSELQD 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHT 559
                     ++I +E   V ++  G+I+     S + S    +  ++ D L    +A T
Sbjct: 473 QAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDDQLIFLQNAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFVYD--STCKL 614
           T  +LL +  G     P   L     +  GE + Q L++ + +++I+ A + +       
Sbjct: 533 TQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTY 592

Query: 615 LVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDHVAVVGENRKL 670
             V+  G    VE  E     T K K+  + K+   E+ +  V  V  D + ++ E    
Sbjct: 593 FAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYA 652

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L F+I+++P +  +  GV+  + KDG +  V+   I    +      R   +        
Sbjct: 653 LRFNIEEVPIIGAKAAGVKAVNLKDGDV--VVAAFISNTSSVYLLTQRGSFKRMATEEIP 710

Query: 730 LGKRGGVGSLVPK 742
           +  R   G  V +
Sbjct: 711 VTSRAKRGLQVLR 723


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 224/748 (29%), Positives = 404/748 (54%), Gaps = 23/748 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGRVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN       K  +V+ +  TE Q +
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELIEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V 
Sbjct: 533 DGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH 660
            +    +      ++ +  G       S+       K    +KV   +K+  VV++  D 
Sbjct: 593 VYNEKDFKHEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S +++ +   R  GV+  + KD     V+   + +  + I    R 
Sbjct: 653 LITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746
             +  +  +    KR   G  + K   +
Sbjct: 712 AMKRIDFNVLQEAKRAQRGITLLKELKK 739


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/751 (27%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  +++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 214/743 (28%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR++++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKDIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTIEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--- 598
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH 742

Query: 599 ---------NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKG 638
                     + +      T         L V+S+KG A+ +  ++  +   T  G
Sbjct: 743 RVFAAGPVYGEAVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADLSLSERTSNG 798


>gi|332360267|gb|EGJ38080.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK355]
          Length = 817

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/750 (29%), Positives = 397/750 (52%), Gaps = 27/750 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   E+++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +   G   
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQRGSIK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             +  D+   +  R   G  V +   ++ K
Sbjct: 715 RMAVADI--PVTSRANRGLQVLREL-KTKK 741


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/804 (31%), Positives = 408/804 (50%), Gaps = 75/804 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     +   V   SL   +++ YL YA+S I  RA+PD+RDG KPVHRRI++AM E+G
Sbjct: 1   MAKQLNFLCGEVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG++D D 
Sbjct: 61  LTPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDP 120

Query: 126 AAAYRYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  +  E +L  V E  VDF   ++    EP V P++ P L+ NG+SGIA
Sbjct: 121 PAAMRYTETRLAAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALID+P++S +KL++ I GPDFPTGG IV +   I E+Y 
Sbjct: 181 VGMATNIPPHNLGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVAT-AGIAEAYT 239

Query: 245 LGRGGFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            GRG   +R    +E+V      R    IVVTE+P+QV K+  IEK+A L+ A ++  + 
Sbjct: 240 SGRGSIVMRGVAKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGIS 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES  +   V+    R   P++++ +++  +D+ ++F      L   + P+ + L  
Sbjct: 300 DIRDESDREGIRVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQ-PRQLSLKQ 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           IL+E+L  R + L RR    +Q  +RR  ++ GLL A   +DE+I I+RN       K  
Sbjct: 359 ILQEFLGFREQTLLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKIS 418

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + +R  LT  Q D IL + LR L +LE  +++ E   L A+ +++  LL+   +    + 
Sbjct: 419 LETRLDLTGEQADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRLLLSERAELLKSLK 478

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------MIEKEPIT 521
            E+R +K  +S         +   E       + Q+                +   E   
Sbjct: 479 KELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSKILRPQLPAVEETL 538

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKE-------GDSLKIALHAHTTDRILLLSTDGKAYT 574
           V ++ +G++R +   +  LS    +E        D    +    T + +++++  GKAY 
Sbjct: 539 VEMTLKGYVRRVTPSA--LSRPQSREDITIEAIDDFPVASYLTTTAETLVIINRMGKAYP 596

Query: 575 LPAGNLL--SGRGHGEAIQLLIDLNHNQD--------IVTAF------------------ 606
           L   ++   S +  G  +  L+  +  +D        IV AF                  
Sbjct: 597 LSVADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGAGLQSSPLRRTTDGGT 656

Query: 607 ----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHV 661
                +     L+++S++G       ++ +  + +G T +K+   +++    +  TGD V
Sbjct: 657 SPKSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQV 716

Query: 662 AVVGENRKLLIFSI--DQIPEMSR-GKG-VRLQSYKDGGISDVICFKICEGLT---WIDS 714
            +     +LL   I  +QIP M R  +G V  +  K+  +   I       L     +  
Sbjct: 717 VLATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTGELNNQFILLV 776

Query: 715 AGRSYNRSENDLLGWLGKRGGVGS 738
           + + Y +  +       +RGG+G+
Sbjct: 777 SEQGYFKRISLQSLQRSRRGGIGT 800


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 210/751 (27%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
              V     +    ++ V+  G     E ++  +    +    + +   +++  +    G
Sbjct: 593 WVTVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKGDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 ITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL ++ G    LP   +     +  G+ +  ++ L+ ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 384/743 (51%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A + +ID+P   ++KL+E + GPDFPTGGI ++    I ++Y  G+G   VR+R
Sbjct: 183 LSEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGGI-IQGAAEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  R+P + ++RDES      +   
Sbjct: 242 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 302 LKKDADSQTILNYLLKYTELQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRKSIIIKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++ +    +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEATMYNVMKRELREVKKKFAGP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+I+     S   S+L     ++ D
Sbjct: 478 ---RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTAF 606
            L     A TTD +LL +  G     P   L     +  GE +   I +   ++ ++ A 
Sbjct: 535 HLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAITNFAADEMVIYAE 594

Query: 607 VYDSTCKLLVV--SSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           +  S  + L    +  G     E  E++   +   K   + K+  +++++  +  +  + 
Sbjct: 595 LIQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAADDRIIAIAPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +    L FS  +IP    +  GV+  + K        C    +    +    R  
Sbjct: 655 LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVLTQ--RGA 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G LV +
Sbjct: 713 LKRVAIADIPQTSRANRGLLVLR 735


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDRVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 219/582 (37%), Positives = 349/582 (59%), Gaps = 20/582 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EPVV P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ ++L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +EE   G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G VP+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR     ++ +  ++S+F L+E Q 
Sbjct: 359 VTRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            AIL++RLR L  LE  +I+SE D L+A    +  +L   ++    I  E+ EVK  F  
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDL 540
                 RRT              + +IE+  + + +SN+G+I+          K     +
Sbjct: 479 P-----RRTELMVGEV--LTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
                K+ D ++  +   T D +L  +  G+ Y L    +  
Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPE 573



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVV 654
            ++D++     + +  L+ +S+KG    +++ E  A  R  +G     V  ++ ++ LV 
Sbjct: 493 EDEDLI-----EESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS 547

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
             T DH+       ++      +IPE  R  
Sbjct: 548 TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTA 578


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 395/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++ A 
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   E+++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEEDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +   G   
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQRGSIK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+   +  R   G  V +
Sbjct: 715 RMAVADI--PVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 29/176 (16%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYAELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A----DKATLQQAMIEKEPITVVI-----------SNRGWIRSLKSHSV--------DLS 541
                 K+     +  +E   + +           +  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEEDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L 
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELK 738


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTIEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--- 598
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH 742

Query: 599 ---------NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKG 638
                     + +      T         L V+S+KG A+ +  ++  +   T  G
Sbjct: 743 RVFAAGPVFGEAVDFDLFTTEAEASEDQILQVLSNKGTAYEINLADLSLSERTSNG 798


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/743 (29%), Positives = 398/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEVR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 480 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE +   I +    ++I+ A 
Sbjct: 537 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 596

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 597 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 657 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 716 KRMAVDDIP-QTSRANRGLLVLR 737


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/744 (30%), Positives = 401/744 (53%), Gaps = 23/744 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N+  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F  A++K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI  QGN G+IDGDSAAA RYTEA
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++V+ LIL+G+++  VD+   +++   EP+V PS  PNLL NG++GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           +  E+ +AA+  I     +++ LL ++ GPDFPTGG+ V+  + I +++  GRG   +R+
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGGV-VQGLDGIKKAFETGRGKVIIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E +  G   I++TE+PY+V K+ L++++ EL + +++  + ++RDE+  D   V+ 
Sbjct: 244 RATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + ++      +D++  +  NM  +   R P+ M +  +L  +L+H ++V+ R
Sbjct: 304 ELKKEADAEGVLHFYLKQTDLQIAYNYNMVAI-HERTPRQMGVLALLDAYLSHVKDVVIR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+SF ++   RR E++  L+ A   +DE +A+IR   N+ + K  ++ RFS T+ Q +A+
Sbjct: 363 RTSFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIERFSFTDRQAEAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  +++ E   L  E  +++ +LN  K +   I  E+  +KE  +    
Sbjct: 423 VMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILNDEKTRNRLIIKELTVLKEQVAD--- 479

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGD 549
              +R +  E    +     + MI  E   V +S  G+I+     S   +      KE D
Sbjct: 480 ---KRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRSSMRSFGATNDLPEMKEQD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT--- 604
            L     A TTD +++ +  G    +P   L     +  G+ +  L+ L+    I++   
Sbjct: 537 RLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVPLDPGDRILSVDL 596

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-DHVA 662
              +D T   L V+ +G     + S+  A  + K    +++ +++++      TG + + 
Sbjct: 597 VRTFDETSHCLFVTRQGMVKRSKLSDYNAQRKSKPLQGVRLRADDEVLYAKISTGQEQLF 656

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYN 720
           +  ++   L F+ D +P +  R  GV+  + +D   ++  I FK    +  +   G    
Sbjct: 657 LTTQHGFGLWFTEDDVPVVGVRAAGVKAINLRDQDVVAGAIGFKQAPNIVLLTQRGALKK 716

Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744
               D    +  R   G+ + +  
Sbjct: 717 MRLAD-QFQVSNRALRGTQLLRDL 739


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYILTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A++ K+ D L  A  A+T D + +L+  G    +   ++   S    G  +   +    +
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYILTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 600 QDIVTAFVYDSTCKLLVVSS 619
           +  V   V+       + ++
Sbjct: 743 RVFVAGPVFGEAVDFDLFTT 762


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDSNTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D        V +  G    V+  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFVATKLGQIKRVDRKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGTKAAGVKAINLKKDDVLVAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+    +++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEGDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLVAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 65/200 (32%), Gaps = 31/200 (15%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEGDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A++ K+ D L  A  A+T D + LL+  G    +   ++   S    G  +   +    +
Sbjct: 684 AINLKKDDVLVAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 600 QDIVTAFVYDSTCKLLVVSS 619
           +  V   V+       + ++
Sbjct: 743 RVFVAGPVFGEAVDFDLFTT 762


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 208/733 (28%), Positives = 387/733 (52%), Gaps = 26/733 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R  +E++  G 
Sbjct: 181 MIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSRTEIEQLKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 KQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   +D++  +  NM  +     P+ + L  IL  ++AHRR+++  RS F  +  ++
Sbjct: 300 LNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DE+I++IR  +     K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVISILDEVISLIRASENKSDAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E  NL  +   + +++   +  +N +  E+R++K+ F      G  R +  + 
Sbjct: 419 DIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKF------GNDRRSELQA 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHAHT 559
                     ++I +E   V I+  G+++     S + S    +  ++ D L +   A T
Sbjct: 473 ETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGKRDDDDLILVQQAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFVYDS--TCKL 614
           T  +L+ +        P   L     +  GE + Q + + + +++++ A + D   T   
Sbjct: 533 TQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFETGTY 592

Query: 615 LVVSSKGNAFIVEESEIIA-NTRKGKTFL--KVSSE-EKMKLVVKVTGDHVAVVGENRKL 670
           L  +  G     E  E     T K K+    K+  E + +  V  +  D + ++ +    
Sbjct: 593 LATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYA 652

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L F+ D++P +  +  GV+  + KD      +     +    +         + +D+   
Sbjct: 653 LRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVANTQSFYLLTQRASLKRVATSDI--P 710

Query: 730 LGKRGGVGSLVPK 742
             KR G G  V +
Sbjct: 711 RAKRAGRGLQVLR 723



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K+EE   + + D +L ++ K    L     Q N I   I E+ +I  +  DLG   +  
Sbjct: 511 SKIEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDI--RWKDLGEHLSQT 568

Query: 500 CEVSRADKATLQQAMIEKEPI--TVVISNRGWIRSLKSHSVD---------LSALHFKEG 548
                 D+  L   +++       +  +  G I+  +              +     K+ 
Sbjct: 569 ITNFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLKDE 628

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
             + + +     D I++++  G A    A  +     +  G      I+L  +  +   F
Sbjct: 629 SDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVG---VKAINLKDDDKVQAVF 685

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           V ++    L+ + + +   V  S+I    R G+    +  
Sbjct: 686 VANTQSFYLL-TQRASLKRVATSDIPRAKRAGRGLQVLRE 724



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557
           +   +      +    ++I+ +G+     +  V         + A++ K+ D ++    A
Sbjct: 628 ESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAVFVA 687

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL----------------NHNQD 601
           +T     LL+       +   ++   +  G  +Q+L +L                N   +
Sbjct: 688 NT-QSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFTAGPVFTENAGAE 746

Query: 602 I-VTAFVYDSTCKLLVV-SSKGNAFIVEES--EIIANTRKGKTFLKVSSEE 648
           I + A   + T ++L V ++ G    V+ S   +   T  G     ++ +E
Sbjct: 747 IDLLATPVEETPQILFVIATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 797


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTVEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKMGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAIADIPVTSRANRGLQVLR 735


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 212/753 (28%), Positives = 399/753 (52%), Gaps = 31/753 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +++++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KS
Sbjct: 3   KIESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++L R++Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +++D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L L  +P+ +++ L++++ GPDFPTG I V+  + I ++Y  G G   VR++
Sbjct: 183 LGEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGAI-VQGIDGIKKAYETGHGKIIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      IV+TEIPY+V K++L+++I E+ + K+I  + ++RD+S  +   ++  
Sbjct: 242 TSIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D   ++  +F  +D++  +  NM  +S  R  + + L  IL  +L  ++EV+ +R
Sbjct: 302 LKRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMRPER-LSLKKILVAYLEFQQEVIEKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+
Sbjct: 361 TKYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVKTYDFSEKQADAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  ++++E  +L  E  K + +LNS K+    +A E+R + + +      
Sbjct: 421 ALQLYRLTNTDVTELENEHQHLADEITKDNKILNSPKELNRVLANELRALAKTY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDS 550
              R T  +   +D       +I  E + V++S+ G+I+     S   S      K+ D 
Sbjct: 475 RSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTGLKDEDY 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +  D + + +  G     P   L     +  GE I   I L+ +++I+  + +
Sbjct: 535 PIFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYAF 594

Query: 609 DSTCK---LLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVSSEEKMKLVV-----KVT 657
           DS  +    L+ + +G+      +++    T K   +   K+ + ++  + +       T
Sbjct: 595 DSLKQPGTFLIATDQGHVKQTGFADMKPGRTYKSHAYTYEKLKTADERVVAIHYLKTPAT 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSA 715
              + ++  N   L + ID++P    R  GV+    +    ++++      + L  +   
Sbjct: 655 AGQMLLISNNGLALRYGIDEVPVNGARTTGVKSMGLRGVDKVTNLQLVSEDDVLAIVTQR 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           G     +  ++      R   G ++ +   ++ 
Sbjct: 715 GSFKKLAVKEI--PATSRARKGVMILREL-KNN 744


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKTDAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 480 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 537 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 596

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 597 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 657 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 716 KRMAVDDIP-QTSRANRGLLVLR 737


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   + KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 29/176 (16%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L 
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 225/757 (29%), Positives = 415/757 (54%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  ID+P IS+ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M L  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQITYNFNMVAISDG-RPKLMGLREIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             R+++ +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V  F  TE Q +
Sbjct: 359 ANRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           EGDSL      +T D  L+ +  G+   +P   +   R    G+ +  ++ L  N+ I+ 
Sbjct: 533 EGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +D     ++ +  G      +S +   TR  K  +  K+ +E+++  V+++T +
Sbjct: 593 VFNEKTFDGKAFYIIATRNGMIKKSNQS-LFKTTRFNKPLIATKLKNEDEVVNVLRITQE 651

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + V+      L +S +++ +   R  GV+  + KD     ++   + +  + I +  R
Sbjct: 652 QMIIVITHKGMSLTYSTEELSDTGLRAAGVKSINLKDEDYV-IMTDTVDKNNSIIMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +     +    KR   G  + K   ++  + +++
Sbjct: 711 GAIKRIAKDILQDAKRAQRGITLLKELKKNPHRIVAA 747


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTGGI ++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGI-IQGLDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I+ GL+ A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 ------NRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ ++
Sbjct: 533 KEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKEDDYVASGRALNSEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 216/743 (29%), Positives = 393/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   + KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +   G   
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQRGSIK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+   +  R   G  V +
Sbjct: 715 RMAVADI--PVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---- 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELKTKPH 742

Query: 598 ----HNQDIVTAFVYD---------STCKLLVVSSKGNAFIVEESE--IIANTRKG 638
                      A  +D             L V+S+KG A+ +  ++  +   T  G
Sbjct: 743 RVFAAGPVFGEAVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADLSLSERTSNG 798


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 209/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KS
Sbjct: 3   NIQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +LQ +D++ V +   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LID+P   ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   IV TEIPY+V K+ L++KI ++ +  ++P + ++RDES  +   +   
Sbjct: 242 TEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +F  +D++  +  NM  +     P+ + +  +L  ++AHR++++  R
Sbjct: 302 LKKDADEQTILNYLFKYTDLQINYNFNMVAIDN-YTPRQVGIIPMLTSYIAHRKDIIVAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      +++++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMYNVMKRELREVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S    L  ++ D
Sbjct: 475 GNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSFNASTVEELGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDI--VT 604
            +    +A TT  +L+ +  G     P   L   R    GE + Q + +   +++I  V 
Sbjct: 535 DVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYVD 594

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVS-SEEKMKLVVKVTGDH 660
              +         +  G     E  ++    + K K     K+   ++++  +  +  D 
Sbjct: 595 LVDHFEEGTYYAATRLGQIKRFERRDLTPWRSYKSKAAKYAKLKGDDDQVIRISPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V ++      L F+I+++P +  +  G++  + K+G           + +  +   G   
Sbjct: 655 VMLITARGYALRFNIEEVPIVGPKAAGIKAINLKEGDSLATAFIANTDSIYILTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             + N +   +  R   G  V +
Sbjct: 715 RMTTNLI--PVTSRAKRGLQVLR 735


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 220/757 (29%), Positives = 394/757 (52%), Gaps = 30/757 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T    N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  F  
Sbjct: 2   TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ +D+  V+    +++ + EP V P++FPNLL NG +GI+ G AT 
Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E   A + L+D+PE  ++ L+++I GPDFPTGGI++   + I ++Y  GRG  
Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIML-GLDGIKKAYETGRGKA 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RAR  +E+V      IV+ EIPY+V K+ L++KI E+ + K+   + ++RDES  +  
Sbjct: 241 MLRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  +   ++  +F  +D++  +  NM  +       V  L  IL+ +L H+R 
Sbjct: 301 RIVVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDHKCPKHV-GLKKILESYLEHQRI 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ +R+ F +     R  I+ GL+ A   +D++I  IR   N+   K  +VS F  TE Q
Sbjct: 360 VVTKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVSSFDFTEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +   +++E ++L     +   +LN+GK+    I  E++ + + + 
Sbjct: 420 AEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKILNNGKELDKVIKKELKTIDKKYG 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                   R T       +     + M+ +E + +++S  G+++     S    D S   
Sbjct: 480 TP------RLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYVKRSSLRSFKASDESDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            KE D + +   A+T D +L+ +  G     P  +++  R    GE +   + L+ ++ +
Sbjct: 534 LKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDERV 593

Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSE-EKMKLVVK 655
           + AF +DS  K    +  + +G        ++        + +TF+K+ ++ +++ +   
Sbjct: 594 IEAFTFDSLEKEGAFVFATKEGMIKQTLLKDLKPGRTYRSRAQTFIKLKTDTDEVIMAEF 653

Query: 656 VTGD----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710
           V  +     V         L + ++++P    R  GV+    +D  +  V      + + 
Sbjct: 654 VETENEDLQVFCTTHAGYGLRYLLNEVPTTGARTSGVKCMDLRDDFLISVSLVSEHDEVA 713

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +   G       + +      R   G  + +   R+
Sbjct: 714 IVTQRGAFKKMKVDKIPE--NSRARRGVQILRELKRN 748


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G      
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S++ LL  I GPDFPTGGI ++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGI-IQGLDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I+ GL+ A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAKFGFTEAQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E + L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLLQVIKADLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 ------NRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  ++ L+ ++ ++
Sbjct: 533 KEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFNEEEVSPVGVRAAGVKGINLKEDDYVASGRPLNSEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/756 (28%), Positives = 407/756 (53%), Gaps = 24/756 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++++++E +L+ ++++ V F   Y++   EP+V P++ PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++Y+ GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKFIDNPDITVAQLMKYVKGPDFPTG-GIIQGIDGIKKAYETGKGKIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTE+PY+V KS L++K+ EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEDEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + ++  ++  +D++  +  NM  +S    P +M +   +  +L H+ +V+
Sbjct: 300 AIELKKDVNSEAVLNYLYKNTDLQVAYNFNMVAIS-EGRPVLMGIRQFIDSYLNHQIDVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+ I++GL+ A   +DE+I +IR   N+   K  +V+ F  TE Q +
Sbjct: 359 TKRTRYELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E D L +   ++ ++L+      N I  E+ E++  F + 
Sbjct: 419 AIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHSALLNVIKEELTEIRNRFKQG 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ MI  E + + ++  G+I+     S + S    +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVMIPSETVIMSVTKHGYIKRTSLRSYNASGVNEIGVK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           +GD L      +T D  L+ +  G+   +P   L     +  G+ +  ++ L+  + I+ 
Sbjct: 533 DGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKELGQHVSQIVPLDEGEFIID 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           A+    +      ++ +  G       S    +   K    +KV  ++++  V+++    
Sbjct: 593 AYCESDFKPDAFYILATRHGMIKRSNVSMFKTSRFNKPLVAMKVKDDDEIINVMRIDSTQ 652

Query: 661 VA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           +  V+      L +S D++ +   R  GV+  + KD   + V+   I    + + +  R 
Sbjct: 653 LITVITNKGMSLTYSSDELSDTGLRAAGVKSINLKDEDFA-VLTQVISANNSILMATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
             +     +    KR   G  + K   +S  + +++
Sbjct: 712 SLKRIGFKVLQTAKRAQRGITLLKELKKSPHRIVAA 747


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 480 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 537 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 596

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 597 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 657 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 716 KRMAVDDIP-QTSRANRGLLVLR 737


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 480 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 537 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 596

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 597 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 657 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 716 KRMAVDDIP-QTSRANRGLLVLR 737


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 399/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE +   I +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 595 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 655 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 399/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 8   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 67

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 68  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 127

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 128 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 187

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 188 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 246

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 247 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 307 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 366 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 425

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 426 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 482

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 483 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 539

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE +   I +    ++I+ A 
Sbjct: 540 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 599

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 600 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 659

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 660 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 718

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 719 KRMAVDDIP-QTSRANRGLLVLR 740


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/743 (35%), Positives = 407/743 (54%), Gaps = 29/743 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG-LDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M     L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+ G GNFG++DGD+AAA RYTE
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  ++  +L  + +  V FR  Y+   SEP+V PS+ P LL NGT+GIAVGMAT+IP 
Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+C+A  ALI+N  ++++ L++++ GPDFPTGG I+ S+  + E Y  G+G  R+R
Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             + +E+V +G   I++T IPY V KS L+ KI +L+  +++PLL D+RDES ++VRIVL
Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKEVRIVL 334

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHR 368
             K R   P+L+M  ++  + ++T F +N+  L     P+V     + L  IL+ +L  R
Sbjct: 335 EFK-RDASPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
            EV+ +R    +  + +RV IL+G    Y  +DE+I IIR  +        +++RF L E
Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLMARFKLDE 453

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            QVDAIL ++L  L +LE   I+ EL     E ++I+ +L   ++ W  +  E+ E+K  
Sbjct: 454 VQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKAT 513

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           ++       RRT        +    + A I  E   VV++  GWI+ +     D S    
Sbjct: 514 YNDK-----RRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRV-REVKDPSTTRL 567

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +EGD++   L       ++L S  G AY     ++ +  G+G+ +Q L   +  + IV A
Sbjct: 568 REGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGA 627

Query: 606 FVYDS----TCKLLVVSSKGNAFIVEES-EIIANTRKGKTFLKVSSEEKMKLVVKV-TGD 659
              DS      KL+ V+  G          +  +TR G+ + K    +++  V  V   D
Sbjct: 628 LSLDSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKD 687

Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGG-ISDVICFKICE---GLTWIDS 714
            +AV+ E     +    ++ E+   GKGV +   + G  + + +     +    +T+   
Sbjct: 688 LLAVLTERTYATVCRAAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQ 747

Query: 715 AGRSYNRSENDLLGWLGKRGGVG 737
            GR    S       +  RGG G
Sbjct: 748 KGRKLTLSPAKYE--VTGRGGKG 768


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/743 (28%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   + ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VVTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/746 (28%), Positives = 382/746 (51%), Gaps = 27/746 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G  F   F+K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G++DGD  AA RYTEA
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ ++++ V+F   ++++D EP V PS+FPNLL NG +GI+ G AT IP H
Sbjct: 125 RLSAIAAELLRDINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+QE  +A L  +DN   ++++L+  I GPDFPTGGI ++  + I ++Y  G+G   VR+
Sbjct: 185 NLQEALDAVLMRLDNKSCTVDELMTVIKGPDFPTGGI-IQGVDGIKKAYETGKGKIIVRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-IIAKRIPLLEDIRDESAEDVRIVL 313
           R  +E++      I++TEIP++V K+ +I K+ EL +  +R+  + +IRDES  +   ++
Sbjct: 244 RTEIEQLKGNKEQIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +    ++  +   +D++  +  NM  +     P +M L  +L  ++ H++E++ 
Sbjct: 304 VELKKDVPAQGILNFLLKSTDLQVSYNFNMIAIHNR-RPMMMTLPLMLDAYIDHQKEIVR 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS + +   + R+ I++GL+ A   +DE+I  IR        K  ++ +F  +E Q +A
Sbjct: 363 RRSQYDLTRAEDRLHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEKFGFSEEQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +  Q++ E D L     K+ ++L   K+    I  E+ ++K+ F+   
Sbjct: 423 IVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILEDEKKLIRVIKSELNDIKKRFTLP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R +  E    +    +  ++  E + V ++  G+++     S   S       K+
Sbjct: 482 -----RLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKRTSLRSHSASNGKDFAMKD 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L    + +T   +LL +  G     P   L     +  G+ I  ++ ++ N++I+  
Sbjct: 537 SDYLLYEANLNTQHHLLLFTNKGHYIYQPVHELPDIRWKDLGQHISSIVPIDSNEEIIEV 596

Query: 606 FV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
                       +   + +G       ++ I  TR  K    + +  E++M     VT  
Sbjct: 597 IGIETFEQPNMYVFTATKEGQIKRSALADYI-VTRYSKPIKTMNLKGEDEMIFARLVTDK 655

Query: 660 HVAVVGEN-RKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716
              ++  N    + F ++ +P    +  GV+    K+G  ++ V   K  +    +    
Sbjct: 656 EEVLLSTNTSYTIRFPMEDLPVTGVKTAGVKGIIVKEGEYLAAVALLKPDQEQELVIVTQ 715

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
           R   +        LG R   G ++ K
Sbjct: 716 RGAVKRMLLSELELGNRAKRGVVILK 741


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/757 (29%), Positives = 415/757 (54%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +++ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  ID+P IS+ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   ++VTEIPY+V K+ L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M L  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQITYNFNMVAISDG-RPKLMGLREIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             R+++ +   ++R+ I++GL+ A   +DE+IA+IR   N+   K  +V  F  TE Q +
Sbjct: 359 ANRTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L    E+  ++L++     N I  E+ E+++ F  S
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTS 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ ++  E + + ++  G+I+   + S + S    +  K
Sbjct: 479 ------RLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           EGDSL      +T D  L+ +  G+   +P   +   R    G+ +  ++ L  N+ I+ 
Sbjct: 533 EGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +D     ++ +  G      +S +   TR  K  +  K+ +E+++  V+++T +
Sbjct: 593 VFNEKTFDGKAFYIIATRNGMIKKSNQS-LFKTTRFNKPLIATKLKNEDEVVNVLRITQE 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L +S +++ +   R  GV+  + KD     ++   + +  + I +  R
Sbjct: 652 QMITVITHKGMSLTYSTEELSDTGLRAAGVKSINLKDEDYV-IMTDTVDKNNSIIMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +     +    KR   G  + K   ++  + +++
Sbjct: 711 GAIKRIAKDILQDAKRAQRGITLLKELKKNPHRIVAA 747


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/748 (35%), Positives = 421/748 (56%), Gaps = 43/748 (5%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           ++V L     + YL YA S +K RA+PD+ DG KPV RRI++AM  MGL  G    KSAR
Sbjct: 16  ESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAMDRMGLRAGVKPVKSAR 75

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGDQ+ YD++VR+AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR++
Sbjct: 76  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLS 135

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +AEL+L  + E  V+F   Y+ ++ EP + P++ P LL NG SGIAVGMAT IPSHN+ 
Sbjct: 136 PIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGASGIAVGMATEIPSHNLG 195

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+  A +A+I NP IS ++L + + GPD+ +G  I+   E + + Y  G+G  +VRARW 
Sbjct: 196 EVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQIYETGKGTVKVRARWE 255

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLE 299
            EE+ RG W +VVTE+P      +++E+I EL                    +  + LL+
Sbjct: 256 FEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSLNSEQQNTKSMMLGLLD 315

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +RDES  +  VR+V  PK   +D +  + ++   + ME    +N+  + +   P+   L
Sbjct: 316 AVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSINLVCIGIDGKPRQRNL 375

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW+  R E +  R+ +R++ +  R+ +L+G  I  LN+DE+I+ IRN D+PKP +
Sbjct: 376 KEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVDEVISTIRNSDEPKPAL 435

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F+L++ Q + IL ++LR L KLE  +I+ EL++   E++K+++LLNS      QI  
Sbjct: 436 IEKFNLSDRQAEDILEMKLRQLAKLEGIKIQQELEDKRLEQKKLENLLNSNSSLKKQIIK 495

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI    + ++ +      R T     +  +    +  +  EP+TV+IS++GW+R+ + H 
Sbjct: 496 EIESDAKKYADA------RRTLI---KHAEKATLEVKVVDEPVTVIISDKGWVRARQGHG 546

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           V+ SAL+FK GDSL       T D ++ + ++G+ YT+P  +L S RG G+    +IDL 
Sbjct: 547 VEESALNFKSGDSLYGTFEVRTVDNLIGIGSNGRVYTVPVSSLPSARGDGQPYSAMIDLE 606

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
               I            L++   G  F+    ++++  + GK+F+ +     +   + V 
Sbjct: 607 SKTQISHYVCAKEDSVWLLMQDNGLGFVTTFKDMVSRIKAGKSFISMEEGANLLRPIPVG 666

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWID 713
            +  ++ ++ +N + LI  I  I  + S G+G  L        IS V+        + I 
Sbjct: 667 SSARYIGMLSKNDRFLIVPIQDIKHLNSGGRGTILMGLDPKDKISQVVTVT----ESGIQ 722

Query: 714 SAGRSYNRSEN------DLLGWLGKRGG 735
           + G   N+         DL  ++GKR  
Sbjct: 723 ATGIYRNKQVEELIALGDLHEYIGKRAR 750


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/752 (29%), Positives = 369/752 (49%), Gaps = 48/752 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RAIPD RDG KPVHRRI++AM ++ L      +K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDE 149
           D +VYD+LVRLAQ F   YPLI G GNFG+ID D AAA RYTE R+T++++  +L+ + +
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   ++  + EP V P+K P LL NG+SGIAVGMAT+IP HN+ EI  A  AL+  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 210 PE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +    ++ +KLL+ + GPDFPTG   + S     + Y  G GG  +RA   +E++  G 
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGA-SILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGR 239

Query: 266 W------CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   I+VTE+PYQV K+ L+EKIA L+  K++  + D+RDES  D   V+    R 
Sbjct: 240 KSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVL-------SMGRVPQVMPLDGILKEWLAHRREVL 372
               +++ +++  + ++T F  N   L       S   VPQ   L   +  +L  R E +
Sbjct: 300 AVAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETI 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R+S F++  ++ R  I+ GLL+A   +D +I I+R        +  +      +  Q D
Sbjct: 360 RRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSEQTD 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL L+L  L +L + +++SE  +L   +E +  LL      ++ +  E  ++ + F   
Sbjct: 420 AILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRFG-- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--- 546
              G R+++       D       +IE     +V++  G+I+ +   + +      +   
Sbjct: 478 ---GERKSSII--VEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKR 532

Query: 547 --------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
                       +      +  D +L+++ +G AY L A  +        G+ I  ++ +
Sbjct: 533 GTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPV 592

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        +     +++ + +G             + +G T   +   +++K  
Sbjct: 593 RGDEVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWC 652

Query: 654 VKVTGDHVAVVGE-NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLT 710
            +V  +   ++G        F   ++    R  +GVR    ++G  I+D+          
Sbjct: 653 HRVRNEDDILIGTVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVLSGKNKEY 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +    + Y +           RGGVG +  K
Sbjct: 713 ILTVTAQGYGKRIATSEFRAQARGGVGVIAIK 744



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 75/216 (34%), Gaps = 16/216 (7%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
                A L  +    E   V+ + +GWI+        K  S  L+    ++GD LK    
Sbjct: 595 DEVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHR 654

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTCKL 614
               D IL+ +  G A    A  L         ++ +  L     I  +      +   +
Sbjct: 655 VRNEDDILIGTVGGMATRFGAAKLRPTGRTSRGVRAM-KLREGDTIADMNVLSGKNKEYI 713

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLVVKVTGDH-VAVVGENR 668
           L V+++G    +  SE  A  R G   + +       E+K+  +  V  D  + V+    
Sbjct: 714 LTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEEILVITARG 773

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            ++      IP   R   GV +Q   DG     +  
Sbjct: 774 IMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSI 809


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 388/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSI-IQGQDEIRKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +      QV  +  IL  ++AHR+ ++  R
Sbjct: 302 LKKDADTQTVLNYLLKYTDLQVNYNFNMVAIDNYTPHQV-GIQKILSSYIAHRKSIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F M   ++R+ I++GL+     +DE+IA+IR   N+   K  +   ++ TE Q +AI+
Sbjct: 361 SKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIADEATMYNVMKRELREVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S L     ++ D
Sbjct: 475 GNPRRSQLQKEAETIEIDTASLIVEEETFVSLTQGGYIKRTSPRSFNASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
           SL     A TT  +L+ +  G     P   L   R    GE + Q + +  +++ ++ A 
Sbjct: 535 SLIFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRWKEIGEHLSQTITNYGNDEKVLYAE 594

Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D   +     V+  G     E +E+        K   + K+   ++++  V  +  + 
Sbjct: 595 LVDDFKSGTYYSVTQLGQIKRFERAELAPWRTYRSKSLKYAKLKNEQDRIIAVQPILFED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++      L FS +++P    +  GV+  + K             +    +   G   
Sbjct: 655 IMLISHQGYALRFSNEEVPVQGLKTAGVKAMNLKKDDYIASAFLAYTDSFFVLTQRGSLK 714

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
             +  D+      R   G LV +
Sbjct: 715 RVATEDI--PQTSRANRGLLVLR 735


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/763 (32%), Positives = 395/763 (51%), Gaps = 35/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+   
Sbjct: 15  QDHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSD 74

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA 
Sbjct: 75  KPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAM 134

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMAT
Sbjct: 135 RYTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMAT 194

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           SIP HN++E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG
Sbjct: 195 SIPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRG 253

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+   EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +
Sbjct: 254 SVIIRAKIDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYE 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  +PD+++  ++  + +++ F +N+  L+      +  L  I+K ++  +
Sbjct: 313 GIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLD-LKTIIKNYVEFQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
             V+ +RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E
Sbjct: 372 VSVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNKYNFDE 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + 
Sbjct: 432 EQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RRT   +          + +I      +++S  G+IR +      +     
Sbjct: 492 FGD-----NRRTELIDEEL--INIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGG 544

Query: 546 KE-------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID- 595
           +         D + IA      D +L  +  GK Y     N+   S    G  I   ++ 
Sbjct: 545 RGVSVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLND 604

Query: 596 LNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L     I       +       L  V+ KG     + SE     R GK  + +   +++ 
Sbjct: 605 LTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLV 664

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--DVICFKICE 707
            V   TG D V +  E+ K++      +   SR G GVR    +D  +    +  FK+  
Sbjct: 665 SVFATTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVRALKLEDDDVVVGAISSFKLTH 724

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  + +   +        +  R G G  V     R+GKF
Sbjct: 725 ---ITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            EK      ++ +G I+  K             A++ +E D L         D + + + 
Sbjct: 621 KEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTVFIANE 680

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK   +    +      G  ++ L  L  +  +V A        +  VS+KG       
Sbjct: 681 SGKVIRIKESVVNPQSRVGGGVRAL-KLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPI 739

Query: 629 SEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +   + R GK    ++  ++      ++     D + ++  +  L+   +  IP +SR 
Sbjct: 740 DDYRISGRNGKGIKVMNLNQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRN 799

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+     D    + I  +
Sbjct: 800 ASGVKAIRLTDNQEINAITLE 820



 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 2/182 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     VS           I  E   V+      +     
Sbjct: 638 RTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQSR 697

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  ++ D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 698 VGGGVRALKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 757

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                          T  ++++SS GN    + S I + +R   G   ++++  +++  +
Sbjct: 758 NQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAI 817

Query: 654 VK 655
             
Sbjct: 818 TL 819


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/759 (29%), Positives = 370/759 (48%), Gaps = 51/759 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YALS I  RA+PD RDG KPVHRRI++AM+ +GL    +++K AR+VGEV+GK HPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDE 149
           D +VYD+LVRLAQPF    PLI G GNFG+ID D AAA RYTE R+T++ AE +L  +  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID- 208
           D V+F   ++  + EP V P+K P LL NG +GIAVGMAT++P HN+ E+ +A +AL   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 209 ----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--- 261
                 E++  KLL+ I  PDFPTG   +  +      Y  G GG  +RA   +EEV   
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGA-CIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTS 239

Query: 262 ----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     I+VTE+PYQV K+ L+E+IA L+  K++  + D+RDES  D   ++    
Sbjct: 240 SGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELK 299

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           R     ++  ++   + ++T F  N   L   G  PQ   L   L  +L  R + +  + 
Sbjct: 300 RDAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKC 359

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF----SLTENQVD 429
           +F++  ++ R  I+ GLLIA  + DE+IAI+RN       +  ++S       L+  Q D
Sbjct: 360 AFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSAQAD 419

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A+L L+L  L +L   ++  E   L   +  + +LL +     + +  E   +K+ F   
Sbjct: 420 AVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRFGTP 479

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--- 546
                 R T       DKA +   +++ E   +V++  G+I+ +   + +      +   
Sbjct: 480 ------RKTKILPDEEDKADI--DLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKR 531

Query: 547 -------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
                  + +++      +  D +L+ +  G AY L A  +  G     G  I  ++ + 
Sbjct: 532 GTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVK 591

Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            +  I +      +     +++ +  G       +     T++G     ++  +++    
Sbjct: 592 SDDVITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCE 651

Query: 655 K-VTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLTW 711
           K    D + V     +   F    +   +R  +GV+  + K G  I+D+   +  +    
Sbjct: 652 KCTDNDDILVGSTRGQATRFKAADLRPTARTSRGVKSMTLKKGDTIADMNVLRKEDKFVL 711

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           + +    Y +           RGG G +  K   ++G+ 
Sbjct: 712 VVTTE-GYGKRVLTEEFRTTARGGSGVIAIKF--KAGRV 747



 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 17/209 (8%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           K    V+ +  GWI+        K     L      +GD L         D IL+ ST G
Sbjct: 607 KNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRG 666

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEES 629
           +A    A +L         ++ +  L     I     +      +LVV+++G    V   
Sbjct: 667 QATRFKAADLRPTARTSRGVKSM-TLKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTE 725

Query: 630 EIIANTR--KGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
           E     R   G   +K  +   ++++  +  V   D + ++     ++   +  I    R
Sbjct: 726 EFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGR 785

Query: 684 GK-GVRLQS--YKDGGISDVICFKICEGL 709
              GV +Q    + G     +     E  
Sbjct: 786 AATGVLVQKVDVRSGDSISTVSIVPKEDA 814


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 400/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+
Sbjct: 363 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 423 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 479

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 480 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 537 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 596

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660
                     + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + 
Sbjct: 597 IVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMED 656

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +N   L FS  ++P    +  GV+  + K+   S    F +     ++ +   S 
Sbjct: 657 LLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSL 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 716 KRMAVDDIP-QTSRANRGLLVLR 737


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEDVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/742 (31%), Positives = 391/742 (52%), Gaps = 31/742 (4%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +   F+KSA+ V
Sbjct: 1   MSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G V+G  HPHGD S+Y++LVRL+Q +  R PL+   GN G++DGD AAA RYTEAR++++
Sbjct: 61  GNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+ E+
Sbjct: 121 AGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + LI +P+ S+EKL+E+I GPDFPTGGI V+  E I ++Y+ GRG   VRA+  +E
Sbjct: 181 LDALIYLIKHPDASLEKLMEFIPGPDFPTGGI-VQGVEGIKKAYQTGRGRIVVRAKTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +     R+
Sbjct: 240 TLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRN 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +   ++  +   +D++  +  NM  +   R  +V  L  IL  +LA ++EV+ RR+S+ 
Sbjct: 300 ANAAGILNYLLKNTDLQINYNFNMVAIDDQRPMRV-GLKRILTSYLAFQKEVVRRRTSYN 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +    RR+ I++GL+ A   +D++I  IR   N    K  ++ +++ ++ Q +AI+ L+L
Sbjct: 359 LDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFSDVQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +  +++ E  +L    ++   +L+  ++    +  E++ VK+ F      G  R
Sbjct: 419 YRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELSKVVRREMQAVKKEF------GNPR 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKI 553
            T  E          +  +  E + V++S+ G+I+     S   S+L     +E D   +
Sbjct: 473 RTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGLREDDYPLL 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
               +T   + + +  G     P   L     +  GE I   I L  N++I+ A V+D  
Sbjct: 533 VTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLTDNEEIIKAMVFDKL 592

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVT----GDH--- 660
                 +  +S G        +    +R K    + V  +     VV V      D    
Sbjct: 593 DLPGSFIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSADATVVSVDYYEPTDENRS 652

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           +  +      + F +  +P    R  GVR  + KD   ++D++  K  +G        R 
Sbjct: 653 LLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDTLADLVLVK--DGQRVASITQRG 710

Query: 719 YNRSENDLLGWLGKRGGVGSLV 740
             +        +G R   G LV
Sbjct: 711 AFKEMPIDEIAVGARARRGELV 732


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 202/672 (30%), Positives = 344/672 (51%), Gaps = 29/672 (4%)

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D 
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPTG +++  R  I  +Y  G+G   +R+R  +E    G   IVVTE PY V
Sbjct: 121 MEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGV 179

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+++ E I  L   KRI  +  +RDES+ +    +    R    ++++ ++F L+ ++T
Sbjct: 180 NKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQT 239

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F  NM  +  G VP+++ L  I+  ++ H++EV+ RR+ F     + R  IL+GLL+A 
Sbjct: 240 NFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVAL 298

Query: 398 LNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            ++DE+I IIRN +     +  ++SRF L+E Q  AIL++RLR L  LE  +I+SE ++L
Sbjct: 299 DHLDEVITIIRNSETDTIAQAELMSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDL 358

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           LA    +  +L   ++    I  E+ EVK  ++ +      R T   +     +   + +
Sbjct: 359 LALIADLADILAKPERVVTIIKEEMDEVKRKYADA------RRTELMIGEV-LSLEDEDL 411

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           IE+E + + +SN+G+I+          K     +        D ++  +   T D +L  
Sbjct: 412 IEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFF 471

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSK 620
           +  G+ Y L A  +        G  I  L+ L+  + I T         +       + +
Sbjct: 472 TNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQ 531

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIP 679
           G       SE     + G   + +   +++  V+ +   + V +       + F ++ + 
Sbjct: 532 GIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVR 591

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R   GVR  + ++G    V   +I  G   +    + Y +           RGG G 
Sbjct: 592 NMGRTATGVRGVNLREGD-KVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGI 650

Query: 739 LVPKGFPRSGKF 750
                  ++G  
Sbjct: 651 KTANITAKNGPL 662



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          +            + +G ++              L A++ KE D L 
Sbjct: 503 LDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 562

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L     + +++ +  G +       + +       ++  ++L     +V A    +  
Sbjct: 563 NVLLIDENEDVIIGTRTGYSVRFKVNAVRNMGRTATGVRG-VNLREGDKVVGASRIVNGQ 621

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENR 668
           ++L+++ KG     E SE     R GK      +   +    +LV     + + V+ +  
Sbjct: 622 EVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLARLVTINGNEDIMVITDTG 681

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
            ++  ++  I +  R   GV++        + ++   + E
Sbjct: 682 VIIRTNVANISQTGRSTMGVKVMRL--DQEAKIVTVALVE 719



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI--ACEIREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+ G+     I    E    K  F  +   
Sbjct: 476 RVYRLKAYEIPEYGRTAKGLP--IVNLLK-LDEGETIQTIINARKEDVANKYFFFTTQQG 532

Query: 493 GRRRTTFCEVS-------------RADKATLQQAMIEKEPITVVISNRGW--------IR 531
             +RT+  E S               D+      + E E + +  +  G+        +R
Sbjct: 533 IVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIG-TRTGYSVRFKVNAVR 591

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           ++   +  +  ++ +EGD +  A        +L+++  G      A    +    G+ I+
Sbjct: 592 NMGRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIK 651

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK 649
                  N  +      +    ++V++  G       + I    R   G   +++  E K
Sbjct: 652 TANITAKNGPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 711

Query: 650 MKLVVKVTGD 659
           +  V  V  +
Sbjct: 712 IVTVALVEQE 721


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A T   +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 29/176 (16%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L 
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 384/751 (51%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + +RS + ++  + R  I++GL+ A   +D++I  IR        K  + ++F  TE Q 
Sbjct: 359 VTKRSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ ++L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEKEADELSTKIAELQAILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTKNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  I GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVIKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++  R P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAIN-HRRPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ ILL +  G    LP   +     +  G+ +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVTLERDETLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  E+++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/743 (35%), Positives = 433/743 (58%), Gaps = 24/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N +  S+    E  YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A FKKS
Sbjct: 5   NFEQQSIAQFSERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+S+V +AQ F  RYP I GQGN+G  D   S AA RYTE+
Sbjct: 65  ARTVGDVLGKFHPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTES 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++ A+L+L  +++  V++ D ++    EP   P++ PNLL NG SGIAVGMAT +P H
Sbjct: 125 KLSRYADLLLLEINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A + L+DNP I ++ +++ I  PD+PT   IV S   + + Y  G G  ++RA
Sbjct: 185 NLIEVVSACIVLLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312
            +  E        IV+  +P+QV  +++I +I   + AK++PL++DIRDES  +   RIV
Sbjct: 245 VYQKE-----KGNIVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIV 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   +   D D LM  +F  +++E  + +NMNV+ +   P+V+PL  +LKEWL++R +V+
Sbjct: 300 IILHSNRFDVDALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYRMQVV 359

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             R + R   I  R+ ILKGLLIA LNI+E+IA+IR  DKPK V+++ F L   Q +AIL
Sbjct: 360 TNRLTCRFDKIIVRLHILKGLLIALLNINEVIAVIREYDKPKLVLINHFKLNTIQAEAIL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+LR L KLEE +I++E   L+ E+++++ LL+S  +  + I  E++ + + F      
Sbjct: 420 ELKLRHLAKLEEVRIRTEQQELVLERKQLELLLSSNSRLKSLIKKELKIIIKDFGDE--- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RR+         +A  +  ++  E +TVV+SN+GW+R +K H +D + L++K GDS  
Sbjct: 477 --RRSNIKSNVNVAQAFSEDNLVLAEDVTVVLSNKGWVRRVKGHDIDPTTLNYKAGDSYL 534

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            ++   +   ++ + + G++Y+L A +L + RG GE +   +        +   +  ++ 
Sbjct: 535 TSVKGKSNKMVIFIDSTGRSYSLLAHSLSNSRGQGEPLTGKLSPPLGAQFIDIIMGKTSQ 594

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRK 669
            +L+ S  G  FI    +++++ + GK FL +S   ++  V+ V       VA+     +
Sbjct: 595 NILLSSDVGYGFIATFDDLLSSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALATNRGR 654

Query: 670 LLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           LLIFSI ++P +S+GKG +L          +   ++ V      + L  +++        
Sbjct: 655 LLIFSISELPMLSKGKGNKLIQIPVNSAKTRQEFVASVCILFETQQLR-VNAGKHYLTIK 713

Query: 723 ENDLLGWLGKRGGVGSLVPKGFP 745
             DL  ++  R   G L+PKG+ 
Sbjct: 714 FQDLNNYISNRACRGKLLPKGYQ 736


>gi|332361155|gb|EGJ38959.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1056]
          Length = 816

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 391/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDVVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDNAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V +N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 29/176 (16%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L 
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELK 738


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 390/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + DL++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  R
Sbjct: 302 LKKDANTDLILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      
Sbjct: 421 TLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGDERTMYNLMKRELRDVKKKF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D
Sbjct: 475 GNPRLSELQDTANAIEIDTASLIVEEETCVSVTRSGYIKRTSPRSFSASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   
Sbjct: 535 RLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDH 660
           + D          +  G    VE  E         K   F K+   ++++  +  +  D 
Sbjct: 595 LLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDD 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L F+I+++P +  +  GV+  + K   +         + L  +    R  
Sbjct: 655 VMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMAVADIPVTSRANRGLQVLR 735



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 564 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 623

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 624 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVK 683

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---- 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 684 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH 742

Query: 598 ----HNQDIVTAFVYD---------STCKLLVVSSKGNAFIVEESE--IIANTRKG 638
                      A  +D             L V+S+KG A+ +  ++  +   T  G
Sbjct: 743 RVFAAGPVFGEAVDFDLFTTEAEAGEEQILQVISNKGTAYEINLADLSLSERTSNG 798


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +I +       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 210/743 (28%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV+ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +LQ +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S++KL+E++ GPDFPTGGI ++  E I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGGI-IQGAEEIKKAYETGKGRVIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
              E +  G   IVVTEIPY++ KS L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 302 LKKDADAQNVLNYLLKYTDLQVNYNFNMVAIDN-YTPRQVGLIKILSSYIAHRKNIIVKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SQFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASDNKSDAKENLKLSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L      + +++ +    +N +  E+REVK+ F+ +   
Sbjct: 421 TLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGNEATMFNVMKRELREVKKKFANA--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R +  +V          ++I +E   V ++  G+++     S + S+   +  ++ D
Sbjct: 478 ---RRSELQVEAETIEINTASLIVEEETFVSVTRSGYLKRTSPRSFNASSIDEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ +  G     P   L     +  GE + Q + +   +++++   
Sbjct: 535 QLVFVEAAKTTQHLLIFTNLGNVIYRPIHELTDIRWKDTGEHLSQTITNYGTDEEVLHVE 594

Query: 607 VYDSTCKLLV--VSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + D   K     V+  G     E  ++       ++  K     + ++++  +  +  + 
Sbjct: 595 IVDQFTKGTYYSVTQLGQIKRFERKDLAPWRTYRSKSTKYAKIKNDQDRIISISPIFFED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  N   L FS  ++P    +  GV+  + K+     +    I +  ++     R  
Sbjct: 655 ITLVSHNGYALRFSSQEVPVQGLKSAGVKAMNLKNDDY--IASAFIVQSDSFFVLTQRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G LV +
Sbjct: 713 LKRVAITDIPQTSRANRGLLVLR 735


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ I+ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVIIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/763 (32%), Positives = 395/763 (51%), Gaps = 35/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+   
Sbjct: 15  QDHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSD 74

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA 
Sbjct: 75  KPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAM 134

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMAT
Sbjct: 135 RYTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMAT 194

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           SIP HN++E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG
Sbjct: 195 SIPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRG 253

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+   EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +
Sbjct: 254 SVIIRAKIDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYE 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  +PD+++  ++  + +++ F +N+  L+      +  L  I+K ++  +
Sbjct: 313 GIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLD-LKTIIKNYVEFQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
             V+ +RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E
Sbjct: 372 VNVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNKYNFDE 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + 
Sbjct: 432 EQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RRT   +          + +I      +++S  G+IR +      +     
Sbjct: 492 FGD-----NRRTELIDEEL--INIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGG 544

Query: 546 KE-------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID- 595
           +         D + IA      D +L  +  GK Y     N+   S    G  I   ++ 
Sbjct: 545 RGVSVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLND 604

Query: 596 LNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L     I       +       L  V+ KG     + SE     R GK  + +   +++ 
Sbjct: 605 LTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLV 664

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--DVICFKICE 707
            V   TG D V +  E+ K++      +   SR G GV+    +D  +    +  FK+  
Sbjct: 665 SVFATTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAISSFKLTH 724

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  + +   +        +  R G G  V     R+GKF
Sbjct: 725 ---ITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            EK      ++ +G I+  K             A++ ++ D L         D + + + 
Sbjct: 621 KEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANE 680

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK   +    +      G  ++ L  L  +  +V A        +  VS+KG       
Sbjct: 681 SGKVIRIKESVVNPQSRVGGGVKAL-KLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPI 739

Query: 629 SEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +   + R GK    ++  ++      ++     D + ++  +  L+   +  IP +SR 
Sbjct: 740 DDYRISGRNGKGIKVMNLNQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRN 799

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+     D    + I  +
Sbjct: 800 ASGVKAIRLTDNQEINAITLE 820



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 2/182 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     VS           I  E   V+      +     
Sbjct: 638 RTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQSR 697

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  ++ D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 698 VGGGVKALKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 757

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                          T  ++++SS GN    + S I + +R   G   ++++  +++  +
Sbjct: 758 NQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAI 817

Query: 654 VK 655
             
Sbjct: 818 TL 819


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|332686600|ref|YP_004456374.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
 gi|332370609|dbj|BAK21565.1| topoisomerase IV subunit A [Melissococcus plutonius ATCC 35311]
          Length = 813

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/753 (29%), Positives = 406/753 (53%), Gaps = 35/753 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+
Sbjct: 4   QSEIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTE
Sbjct: 64  KSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLRETLIEMHGNNGSMDGDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++++  +L+ ++++ VDF   +++ + EP V P++ PNLL NG++GI+ G AT IP+
Sbjct: 124 ARLSELSGELLKDIEKETVDFVWNFDDTEKEPTVLPARVPNLLINGSTGISAGYATEIPT 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  + LID+P  S+EKL+ +I GPDFPTGGI ++ +E + ++Y  G+G   +R
Sbjct: 184 HNLSEVIDGTIYLIDHPNTSLEKLMTFIPGPDFPTGGI-LQGKEELKKAYETGKGKVVLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +E +  G   I+VTEIPY+V K+ L++K+ E+ + K+I  + +IRDES      ++
Sbjct: 243 SKTAIESLRGGRQQIIVTEIPYEVNKAVLVKKMDEIRLNKKIDGMAEIRDESDRTGLRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +   ++  +F  ++++  +  NM  +      QV  L  IL  +++HR+ V+ 
Sbjct: 303 IELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMTPRQV-GLVHILNSYISHRKIVIK 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
            RS F ++   +R  I+ GL+ A   +D++IA IR        K  +V  ++ TE Q +A
Sbjct: 362 NRSHFELEKAKKRQHIVSGLIKALSILDKVIATIRESKDKKNAKQNLVKTYAFTEEQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+NL+L  L   +  Q++ E + L    EK+  +L + K+ +  +  E+REVK+ +    
Sbjct: 422 IVNLQLYRLTNTDITQLEKEANELALSIEKLTEILENEKELFAVMKKELREVKKKY---- 477

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
                R T  E    +     + ++ +E + V +++ G+I+     S + S    +  K 
Sbjct: 478 --THERATKIENEIQEIKIDTEVLVSQEDVIVTVTHEGYIKRSSIRSYNASKPEEIGIKG 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQ-LLIDLNHNQDIVT 604
           GD L +A   +T D +LL++        P   L   R    GE +   +++L+ ++ I+ 
Sbjct: 536 GDFLLLARQVNTLDHLLLITNKANVIYRPVHELPDLRWKELGEHLSRTILNLSADEAIIG 595

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVS-SEEKMKLVVKVT 657
           A++Y     T   + ++  G     + ++     T K +    +K+   ++++  V    
Sbjct: 596 AYLYKELSATKTFVFMTKAGMIKQTKMTDFAPWRTYKSRATNCMKLKIDDDELVNVYLTD 655

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE----GL 709
                 V +V      L F + ++P +  +  GV+  + K+  +  V    I +     +
Sbjct: 656 KQNHLDVFLVSHFGFGLRFPLSEVPIIGTKAAGVKSMNLKEEDVI-VNGLLIDDTKETEV 714

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           T+I   G     S ++L   L  R   G +V K
Sbjct: 715 TFITQRGNIKRMSTDELT--LLGRAKRGLMVLK 745



 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 160/458 (34%), Gaps = 61/458 (13%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-IIAKRIPL 297
           I+ SY +      ++ R   E         +V+ +            I  L I+ K I  
Sbjct: 348 ILNSY-ISHRKIVIKNRSHFELEKAKKRQHIVSGL------------IKALSILDKVIAT 394

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLME-SIFMLSDMETRF---PLNMNVLSMGRVPQ 353
           + + +D+      +V          + ++   ++ L++ +        N   LS+ ++ +
Sbjct: 395 IRESKDKKNAKQNLVKTYAFTEEQAEAIVNLQLYRLTNTDITQLEKEANELALSIEKLTE 454

Query: 354 VM-PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           ++     +        REV  + +  R   I+  ++ +K      ++ +++I  + +E  
Sbjct: 455 ILENEKELFAVMKKELREVKKKYTHERATKIENEIQEIKIDTEVLVSQEDVIVTVTHEGY 514

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS-ELDNLLAEKEKIDSLLNSGKQQ 471
            K                  ++R  +  K EE  IK  +   L  +   +D LL    + 
Sbjct: 515 IKRS----------------SIRSYNASKPEEIGIKGGDFLLLARQVNTLDHLLLITNK- 557

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT---VVISNRG 528
            N I   + E+ ++  +  +LG   +       AD+A +   + ++   T   V ++  G
Sbjct: 558 ANVIYRPVHELPDL--RWKELGEHLSRTILNLSADEAIIGAYLYKELSATKTFVFMTKAG 615

Query: 529 WIRSLKS------HSVDLSA---LHFK-EGDSLKIALHA--HTTDRILLLSTDGKAYTLP 576
            I+  K        +    A   +  K + D L             + L+S  G     P
Sbjct: 616 MIKQTKMTDFAPWRTYKSRATNCMKLKIDDDELVNVYLTDKQNHLDVFLVSHFGFGLRFP 675

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIAN 634
              +         ++ + +L     IV   + D T +  +  ++ +GN   +   E+   
Sbjct: 676 LSEVPIIGTKAAGVKSM-NLKEEDVIVNGLLIDDTKETEVTFITQRGNIKRMSTDELTLL 734

Query: 635 TRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGENR 668
            R  +  + +        ++  + + +  ++ ++ +  
Sbjct: 735 GRAKRGLMVLKELKNLPHRIVFMAESSPKNLTILTQKG 772


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/763 (32%), Positives = 395/763 (51%), Gaps = 35/763 (4%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
                  +  + +   + + +L YA+S I  RA+PDL+DG KPVHRRII+AM+++G+   
Sbjct: 15  QDHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSD 74

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG+IDGD AAA 
Sbjct: 75  KPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAM 134

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+ +++  +++ +D D V F D Y+  + EP       PNLL NGT GIAVGMAT
Sbjct: 135 RYTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMAT 194

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           SIP HN++E+  A  A IDN +I+I+++L ++I+GPDFPTG ++    + + E Y+ GRG
Sbjct: 195 SIPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRG 253

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+   EE  +     VVTEIPYQ  K+++IEKIAEL+  K I  + DIRDES  +
Sbjct: 254 SVIIRAKIDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYE 312

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  +PD+++  ++  + +++ F +N+  L+      +  L  I+K ++  +
Sbjct: 313 GIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLD-LKTIIKNYVEFQ 371

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425
             V+ +RS F    + +R  IL+ L IA  N+D++I II+N    ++ K  + ++++  E
Sbjct: 372 ISVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNKYNFDE 431

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I  E+ N+      +D L+N+ ++Q N +  ++ E+ + 
Sbjct: 432 EQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADK 491

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F        RRT   +          + +I      +++S  G+IR +      +     
Sbjct: 492 FGD-----NRRTELIDEEL--INIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGG 544

Query: 546 KE-------GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID- 595
           +         D + IA      D +L  +  GK Y     N+   S    G  I   ++ 
Sbjct: 545 RGVSVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLND 604

Query: 596 LNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           L     I       +       L  V+ KG     + SE     R GK  + +   +++ 
Sbjct: 605 LTSEDKITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLV 664

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS--DVICFKICE 707
            V   TG D V +  E+ K++      +   SR G GV+    +D  +    +  FK+  
Sbjct: 665 SVFATTGQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAISSFKLTH 724

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                  + +   +        +  R G G  V     R+GKF
Sbjct: 725 ---ITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            EK      ++ +G I+  K             A++ ++ D L         D + + + 
Sbjct: 621 KEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANE 680

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK   +    +      G  ++ L  L  +  +V A        +  VS+KG       
Sbjct: 681 SGKVIRIKESVVNPQSRVGGGVKAL-KLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPI 739

Query: 629 SEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +   + R GK    ++  ++      ++     D + ++  +  L+   +  IP +SR 
Sbjct: 740 DDYRISGRNGKGIKVMNLNQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRN 799

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+     D    + I  +
Sbjct: 800 ASGVKAIRLTDNQEINAITLE 820



 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 2/182 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     VS           I  E   V+      +     
Sbjct: 638 RTKISEFENINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQSR 697

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  ++ D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 698 VGGGVKALKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 757

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                          T  ++++SS GN    + S I + +R   G   ++++  +++  +
Sbjct: 758 NQRTGKFKAIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAI 817

Query: 654 VK 655
             
Sbjct: 818 TL 819


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/743 (31%), Positives = 404/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 394/752 (52%), Gaps = 30/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KS
Sbjct: 3   KIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L L  +P+ +++ L++++ GPDFPTG I V+  + I ++Y  GRG   VR++
Sbjct: 183 LGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAI-VQGIDGIKKAYETGRGKVIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++  
Sbjct: 242 TKIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D   ++  +F  +D++  +  NM  +   R  + + L  IL  +L  ++EV+ +R
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPER-LSLKQILVSYLEFQQEVIKKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+
Sbjct: 361 TQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +      
Sbjct: 421 ALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDS 550
              R T  +   A        +I  E + V++S+ G+I+     S   S      K+ D 
Sbjct: 475 RNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDY 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +  D + + ++ G     P   +     +  GE I   I L+++++I+  F +
Sbjct: 535 PIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAF 594

Query: 609 D---STCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVSSEEKMKLVVKVTGD--- 659
                    L+ +  G+    + +++    T K   ++  K+   E   + +    D   
Sbjct: 595 SSLKEKGVFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPESRIVAIDYLADPDA 654

Query: 660 --HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWIDSA 715
              + ++ +    L + ID++P    R  GV+ Q+  DG + +++      + +  +   
Sbjct: 655 SGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLKLVNDDDVIAIVTQR 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           G     +  ++      R   G ++ +   ++
Sbjct: 715 GAFKKLAVKEI--PATSRARKGVMILRELKQN 744


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/743 (31%), Positives = 404/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  F  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 219/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E I + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 214/739 (28%), Positives = 389/739 (52%), Gaps = 26/739 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ V
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +LQ +++D V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+ E+
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A + +ID+P   ++KL+E++ GPDFPTG I V+ R+ I ++Y  G+G   VR+R  +E
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAI-VQGRDEIKKAYETGKGRVVVRSRTEIE 239

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +     + 
Sbjct: 240 KLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + +L++  +F  +D++  +  NM  +     P+++ +  IL  ++AHR+E++  RS F 
Sbjct: 300 ANTELILNYLFKYTDLQVNYNFNMVAIDN-FTPRLVGIVPILTSYIAHRKEIILARSRFD 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
               ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+ L+L
Sbjct: 359 KAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +   + +++   +  +N +  E+R+VK+ F      G  R
Sbjct: 419 YRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMYNLMKRELRDVKKKF------GNPR 472

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKI 553
            +  + +         ++I +E   V ++  G+I+     S   S    +  ++ D L  
Sbjct: 473 LSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSFSASTLEEMGKRDDDRLIF 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFVYD- 609
              A TT  +L+ ++ G     P   L   R    GE + Q + + +  ++++   + D 
Sbjct: 533 VSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDS 592

Query: 610 -STCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVV 664
                    +  G    VE  E         K   F K+   ++++  +  +  D V +V
Sbjct: 593 FEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLV 652

Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
            +N   L F+I+++P +  +  GV+  + K   +         + L  +    R   +  
Sbjct: 653 TKNGYALRFNIEEVPVIGAKAAGVKAINLKKDDVLAAAFIANTDSLYLLTQ--RGSLKRM 710

Query: 724 NDLLGWLGKRGGVGSLVPK 742
                 +  R   G  V +
Sbjct: 711 AVADIPVTSRANRGLQVLR 729



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 450 ELDNL-LAEK-EKIDSLLNSGKQQWNQIACEIR---EVKEIFSKSTDLGRRRTTFCEVSR 504
           EL ++   E  E +   +++   +   I  E+    E    F+ +     +R    E S 
Sbjct: 558 ELSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSP 617

Query: 505 A---------------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541
                           +   +      K    ++++  G+        V         + 
Sbjct: 618 WRTYKSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVK 677

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---- 597
           A++ K+ D L  A  A+T D + LL+  G    +   ++         +Q+L +L     
Sbjct: 678 AINLKKDDVLAAAFIANT-DSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH 736

Query: 598 ----HNQDIVTAFVYD---------STCKLLVVSSKGNAFIVEESE--IIANTRKG 638
                      A  +D             L V+S+KG A+ +  ++  +   T  G
Sbjct: 737 RVFSAGPVFGEAVDFDLFTTEAEASEDQILQVLSNKGTAYEINLADLSLSERTSNG 792


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 218/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S+E LL  I GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
                  R    E    +     + MI +E + V ++  G+++     S + S       
Sbjct: 479 ------NRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       L+F+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRIKASEIEKSTRAKRGLVIFKELKRN 743


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/743 (31%), Positives = 404/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/743 (31%), Positives = 404/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ S E+ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EP+V P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  S+E LL  I GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL I K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    +  + + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E   L  +  ++ S+L S K+ +  I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
                  R    E    +     + MI +E + V ++  G+++     S + S       
Sbjct: 479 ------NRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKYFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ ILL +  G    LP   +     +  G+ +  L+ L  ++ ++
Sbjct: 533 KEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLI 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++++  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       L+F+ +++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRIKASEIEKSTRAKRGLVIFKELKRN 743


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 404/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG   +  ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGA-TIYGKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+             ++ +I  E + + ++   +++              +   
Sbjct: 520 -----RRSEIIPEIDC---LDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTL 571

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A +  + D LK     +T   +L++S+  K + L A  +  G  +G G  I  LI L  N
Sbjct: 572 ASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKN 631

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I     ++       L+ VS+ GN      S     T+ GK  LK++  + +      
Sbjct: 632 ESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIA 691

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             +   ++ +      +  +SI  + +  R   GV+    ++G      CF         
Sbjct: 692 PNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNF-IF 750

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + + + +        L  R   G +      ++G  +
Sbjct: 751 SLSKKGFGKKTQVGEYRLTGRTTKGLMSL-DAKKAGNLV 788



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/427 (13%), Positives = 136/427 (31%), Gaps = 36/427 (8%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+ ++V  ++            +   + L+  +T+  + M +  +  +      + I + 
Sbjct: 425 ENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEEL 484

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
            +          S  ++  +                  EII  I   D+   +   +  +
Sbjct: 485 KVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVII 544

Query: 424 TENQVDAILNLRL--RSLRK------LEEYQIKS-ELDNLL--AEKEKIDSLLNSGKQQW 472
           +  Q + +  + L    L+       L     K  EL +L        +  +++S  + +
Sbjct: 545 SLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLL-IISSSAKIF 603

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--ITVVISNRGWI 530
                 +R  +         G       ++ + +  +      ++      + +S  G I
Sbjct: 604 K-----LRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLITVSAFGNI 658

Query: 531 RSLKSHSV------DLSALHFKEGDSLKIALHA-HTTD-RILLLSTDGKA--YTLPAGNL 580
           +     +          AL   E D L  A  A +  D  IL+ S+ G    +++     
Sbjct: 659 KKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD 718

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                 G      I L     I+ A        +  +S KG     +  E     R  K 
Sbjct: 719 SGRTAIGVKG---IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKG 775

Query: 641 FLKVSSE--EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            + + ++    +  +  +  +  A++       +   +D +P +SR  KGV++ + K G 
Sbjct: 776 LMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGD 835

Query: 697 ISDVICF 703
               +  
Sbjct: 836 EITAVSL 842



 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R     ++ +  +  +EG  +  A  A   + I  LS  G  K   +    L      G
Sbjct: 716 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKG 775

Query: 588 EAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLK 643
                L+ L+  +     F+    +  + ++ + KG A  ++     II+   KG   + 
Sbjct: 776 -----LMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIIT 830

Query: 644 VSSEEKMKLVVKVTGDH 660
           +   +++  V  ++ + 
Sbjct: 831 LKKGDEITAVSLISKNE 847


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 390/769 (50%), Gaps = 39/769 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +  V  V +   +   YL YA S I  RA+PD RDG KPVHRRI++ 
Sbjct: 4   MARRTQTPPTPPPDGRVIDVDVAAEMRGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQ 63

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M EMGL       K AR+VG+V+GKLHPHGD ++YD+LVR+AQPF    PL+ G GNFG+
Sbjct: 64  MREMGLRSDRPHVKCARVVGDVMGKLHPHGDMAIYDALVRMAQPFAMWLPLVDGHGNFGS 123

Query: 121 IDGDS-AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           + GD   AAYRYTE RMT  AE +   +DED VDF   Y+ +++EPVV P+ FPNLL NG
Sbjct: 124 LGGDDPPAAYRYTECRMTAAAEAMTADLDEDVVDFAPNYDGQETEPVVLPAAFPNLLVNG 183

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            SGIAVGMAT++P HN+ E+  AA  L++NP+ S+++L+ ++ GPD PTGG IV   + +
Sbjct: 184 ASGIAVGMATNMPPHNLGEVVAAARYLLENPQASLDELMRWVPGPDLPTGGEIV-GLDGV 242

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E+Y  GRG FR+RA   +EEV      IVVTE+PY V   R++ +I +L+ AK++  + 
Sbjct: 243 REAYATGRGSFRMRATARIEEVRGRRKGIVVTELPYGVGPERVVARIKDLVSAKKLAGIA 302

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D+RD +       V+    +  DP  +++ ++ L+ +E  F +N   L  G+ P+ + L 
Sbjct: 303 DVRDLTDRHHGLRVVIEVRQGFDPQAVLDQLYKLTPLEESFAVNNVALVDGQ-PRTLGLA 361

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+ ++ HR EV  RRS+FR +  + ++ I++G L A ++ID +IAIIR  D     + 
Sbjct: 362 DLLQVYVGHRIEVTRRRSAFRKKRREAQLHIVEGRLRAIVDIDRVIAIIRASDDTAQARD 421

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++  F LTE Q + IL+L LR L K  + ++++E D L  +   +  +L S ++    +
Sbjct: 422 ALMETFGLTEVQANDILDLPLRRLTKFSKIELEAERDELRRDIASLGDILGSEQRLRAVV 481

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           + E+  V E F+        R T          T +   I   P  VV+S  G +     
Sbjct: 482 SAELAAVAEQFATP------RRTRLTADDGSPVTSRPLEIPDSPCCVVLSATGLLARTTG 535

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-------GRGHGE 588
                        D++  A+   T   + L+++ G+   LP  +L S           G 
Sbjct: 536 PGFPSGDADRARHDAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPSLDDTGPVSLAGGL 595

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +  ++ L   +++V          +++ +  G    V     +   +   + + +   +
Sbjct: 596 PVSEVLGLEAGEELVGLTPVSEQLDVVLATRSGVVKRVSGR--MPERKPDASIIALRPGD 653

Query: 649 KMKLVVKV-TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           ++     V TG D + ++  + +LL F + ++        GV      DG  + VI F  
Sbjct: 654 RVVGARSVRTGRDELVLITSDAQLLHFPVAELRPQGFAAAGVAGIHLSDG--ASVIFFSA 711

Query: 706 CE-----------GLTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPK 742
            +           G +      ++ +        + GK RG  G    +
Sbjct: 712 VDPARPAVVVTIAGASAALPGTQAGSAKVTRFSEFPGKGRGTRGVRCHR 760


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 232/743 (31%), Positives = 403/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+  G     E  EI    T K KT    K+ + ++ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTRLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 404/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG   +  ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGA-TIYGKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 534

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+             ++ +I  E + + ++   +++              +   
Sbjct: 535 -----RRSEIIPEIDC---LDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTL 586

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A +  + D LK     +T   +L++S+  K + L A  +  G  +G G  I  LI L  N
Sbjct: 587 ASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKN 646

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I     ++       L+ VS+ GN      S     T+ GK  LK++  + +      
Sbjct: 647 ESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIA 706

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             +   ++ +      +  +SI  + +  R   GV+    ++G      CF         
Sbjct: 707 PNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNF-IF 765

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + + + +        L  R   G +      ++G  +
Sbjct: 766 SLSKKGFGKKTQVGEYRLTGRTTKGLMSL-DAKKAGNLV 803



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/427 (13%), Positives = 136/427 (31%), Gaps = 36/427 (8%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+ ++V  ++            +   + L+  +T+  + M +  +  +      + I + 
Sbjct: 440 ENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEEL 499

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
            +          S  ++  +                  EII  I   D+   +   +  +
Sbjct: 500 KVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVII 559

Query: 424 TENQVDAILNLRL--RSLRK------LEEYQIKS-ELDNLL--AEKEKIDSLLNSGKQQW 472
           +  Q + +  + L    L+       L     K  EL +L        +  +++S  + +
Sbjct: 560 SLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLL-IISSSAKIF 618

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--ITVVISNRGWI 530
                 +R  +         G       ++ + +  +      ++      + +S  G I
Sbjct: 619 K-----LRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLITVSAFGNI 673

Query: 531 RSLKSHSV------DLSALHFKEGDSLKIALHA-HTTD-RILLLSTDGKA--YTLPAGNL 580
           +     +          AL   E D L  A  A +  D  IL+ S+ G    +++     
Sbjct: 674 KKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD 733

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
                 G      I L     I+ A        +  +S KG     +  E     R  K 
Sbjct: 734 SGRTAIGVKG---IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKG 790

Query: 641 FLKVSSE--EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
            + + ++    +  +  +  +  A++       +   +D +P +SR  KGV++ + K G 
Sbjct: 791 LMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGD 850

Query: 697 ISDVICF 703
               +  
Sbjct: 851 EITAVSL 857



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R     ++ +  +  +EG  +  A  A   + I  LS  G  K   +    L      G
Sbjct: 731 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKG 790

Query: 588 EAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLK 643
                L+ L+  +     F+    +  + ++ + KG A  ++     II+   KG   + 
Sbjct: 791 -----LMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIIT 845

Query: 644 VSSEEKMKLVVKVTGDH 660
           +   +++  V  ++ + 
Sbjct: 846 LKKGDEITAVSLISKNE 862


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/830 (29%), Positives = 389/830 (46%), Gaps = 123/830 (14%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NGT+GIAVGMAT++  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  +NP ISIE L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYAENPNISIEGLMEYISGPDFPTGGI-IYGKAGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F  + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIVAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+GL +A  NID II  I+    P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL LRL  L  LE+ ++++E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+  + + +  +     RRT   E         ++ 
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIKEELALILQQYGDA-----RRTAIVESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   KE D ++  +       +L 
Sbjct: 536 LIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            +  GK Y L    +   S    G  +  L+ L+ ++ I          K          
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPK---------K 646

Query: 624 FIVEESEIIANTRKGKTFLK-------------------VSSEEKM----------KLVV 654
           F    +E     R     L+                       +++            V 
Sbjct: 647 FKERLAEFKNFVRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVE 706

Query: 655 KVTGDH--------------------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694
             T D                     V +   +  +    ++Q   + R  G+R    K+
Sbjct: 707 LSTTDLDNETVVEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNV-RSNGLRAIELKE 765

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                 +     E    + S         ++    +  R   G    +  
Sbjct: 766 EDTLIGVAITDGEQQIMLFSNE-GKAIRFSETDARVMGRTAKGVRGMRVT 814



 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 26/167 (15%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            + + ++ G    VE  +       G   +++  E+ +  V    G+  + +     K +
Sbjct: 732 FVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAI 791

Query: 672 IFSIDQIPEMSR-GKGVRLQSY-------KDGGISD-----------------VICFKIC 706
            FS      M R  KGVR           +D   +D                 V    + 
Sbjct: 792 RFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVVVP 851

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 852 ETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGA 898



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 92/290 (31%), Gaps = 47/290 (16%)

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E   I +  D L A  +++        +  + +  +++E+    S         TT  + 
Sbjct: 667 ENSIIDAHYDALKASFDELAE---DADELSDALRKQLKELGVELS---------TTDLDN 714

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556
               +       + K     + +  G ++ +         S  L A+  KE D+L     
Sbjct: 715 ETVVEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAI 774

Query: 557 AHTTDRILLLSTDGKAYTLPA--GNLLSGRGHGEAIQLLI-------------------- 594
                +I+L S +GKA         ++     G     +                     
Sbjct: 775 TDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEE 834

Query: 595 --DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEE 648
             DLN    IV+  V   T ++L  S+ G        +     R GK  + +     + E
Sbjct: 835 SSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGE 894

Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            +  V       + ++ +   L+     ++    R  +GVRL    +  I
Sbjct: 895 LVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEEI 944


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++ + I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDNLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/747 (31%), Positives = 385/747 (51%), Gaps = 66/747 (8%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+
Sbjct: 1   MQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+
Sbjct: 61  IDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+
Sbjct: 121 SGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGII 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG  +VRA+  +E+       I++ E+PYQ  K+RLIE+IAEL+  ++I  + +
Sbjct: 180 EAYRTGRGRVKVRAKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISE 238

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDES ++   V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +
Sbjct: 239 VRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLEL 297

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417
           L  +L HR+ V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +
Sbjct: 298 LNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSL 357

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V++F L+E Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  
Sbjct: 358 VAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRD 417

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E++E++  F              ++         + +I  E + V I++RG+I+      
Sbjct: 418 ELKEIRSKFDVP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 469

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HG 587
               K       A+   + D ++    A+T D ++ ++  G+ Y L    +  G     G
Sbjct: 470 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTVKG 529

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +A+  LI+L   + I+       +D +  L   +  G       SE       G   + +
Sbjct: 530 KAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINL 589

Query: 645 SSEEKMKLVVKVTGDH-------------------------------------VAVVGEN 667
              +++   + V  D                                      +  V + 
Sbjct: 590 DENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKK 649

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSEND 725
              + F + ++ E+ R  +GV    +K+     V    I  +    +  + +   +  N 
Sbjct: 650 GMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNA 709

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               L  RGG G +  K   ++   +S
Sbjct: 710 GEYRLQSRGGKGVICMKLTEKTKDLIS 736



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 538 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 597

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 598 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 657

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 658 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 717

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 718 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 773


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/752 (33%), Positives = 394/752 (52%), Gaps = 44/752 (5%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQ+V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQGVDEDAVD 153
           YD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+ ++    +L  V E  VD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F D ++    EP+V P++ PNL+ NG+SGIAVGMAT+IP HN+ E+ +  +AL+D P +S
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-----GRGSWCI 268
            E L + I GPDFPTG  I++++  I ++YR GRG   +R     EE+      R    I
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTK-GIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+PYQV K+  I KIA L+   RI  + DIRDES  +   V+    R   P L++  
Sbjct: 240 VVTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILND 299

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++ ++ ++T F   M  +  G+ P+ + L  IL+ +L  R   L R+ S  ++    R  
Sbjct: 300 LYKMTALQTNFGALMLAIEDGQ-PRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFH 358

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           I++GLLIA  ++D+II I+RN       K  M+  F L++ Q D+IL + LR L  LE+ 
Sbjct: 359 IVEGLLIALDSLDDIIDILRNAPDGTTAKVEMIEAFDLSDRQADSILAMPLRRLTGLEQQ 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +++ E D L     ++++L++        +  E+R +K+ F       RR     E  R 
Sbjct: 419 KLRDESDELDERINQLETLVSDRNVLMKSLKKELRALKKKFGD----RRRTRIQTEAERV 474

Query: 506 DKA---TLQQAMIEKEPITVVISNRGWIRSLKSHS---VDLSALHFKE----GDSLKIAL 555
            +        A   +E   +  + +G++R     +      ++   K      D      
Sbjct: 475 KEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKTRTRRKDASGPTKALEEFDDVTIQTE 534

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN---QDIVTAFVYDS 610
             + T+ +L+L+ +GKA+TL   ++     +  G  +  L+          +VT  V   
Sbjct: 535 ITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIGLLPDAVGSTPDSVVTQIVLSE 594

Query: 611 ---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
                +L++V++KG    +  SE+   T +G T +K+  ++ +K       G  + +   
Sbjct: 595 ARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKDDDLLKHAFIAPMGSDLVLASS 654

Query: 667 NRKLLIF--SIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
             ++L F    DQ+PEMSR      G+RL   +      V C  +    T I  + + Y 
Sbjct: 655 GGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSE----RLVGCIPVSPKDTLILVSNKGYG 710

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +           RGG+GS   K   +S   +S
Sbjct: 711 KRILVSTFKTSNRGGIGSQSFKFNLKSDALVS 742



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 522 VVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--Y 573
           ++++ +G ++ L +          L+A+  K+ D LK A  A     ++L S+ G+   +
Sbjct: 602 ILVTAKGRVKRLPASEMSNLTGRGLTAVKLKDDDLLKHAFIAPMGSDLVLASSGGRVLRF 661

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            + A  L       +     I L  ++ +V          L++VS+KG    +  S    
Sbjct: 662 RIDADQLPEMSRTAQG-PQGIRLPKSERLVGCIPVSPKDTLILVSNKGYGKRILVSTFKT 720

Query: 634 NTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           + R G         + S+  + L V V   ++ V+ +  +    +ID +P   R +
Sbjct: 721 SNRGGIGSQSFKFNLKSDALVSLNVAVPEANLTVLTDQGRAAKIAIDSVPLQGRSQ 776


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/743 (28%), Positives = 377/743 (50%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   ++KL+E + GPDFPTGGI ++    I ++Y  G+    VR+R
Sbjct: 186 LSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGI-IQGAAEIKKAYETGKSRVVVRSR 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   I+VTE+PY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 245 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   ++++  +  NM  +     P+ + L  IL  ++AHR+ ++ +R
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAI-DHFTPRQVGLQKILSSYIAHRKSIIIKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 364 SQFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L      + +++      +N +  E+REVK+ F+     
Sbjct: 424 TLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGDEATMYNVMKRELREVKKKFAGP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+I+     S   S+L     ++ D
Sbjct: 481 ---RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSPRSFHASSLEEIGKRDDD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHNQDIVTA- 605
            L     A TTD +LL +  G     P   L     +  GE +   I +   ++ ++ A 
Sbjct: 538 HLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRWKDIGEHLSQAIANFAADELVIYAE 597

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSS-EEKMKLVVKVTGDH 660
                     + V+  G     E  E+        K   + K+   ++++  +  +  + 
Sbjct: 598 LIQSFEEGLYISVTQHGLIKRFERKELTPWRTYKSKSIKYAKLKDIDDRIVAIAPIIMED 657

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V +    L FS  +IP    +  GV+  + K        C    +    +    R  
Sbjct: 658 LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNADSFFVLTQ--RGA 715

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +           R   G  V +
Sbjct: 716 LKRVAIADIPQTSRANRGLPVLR 738


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/743 (31%), Positives = 404/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ S E+ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N   L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKD--RDHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/743 (31%), Positives = 406/743 (54%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAI-IQGKDEIRKAYETGKGRVAVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I+VTEIPY+V KS L+++I ++ +  ++P + ++RDES  D   +   
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  +++  +F  +D++  +  NM  +     P+ + L  IL  ++AHRRE++  R
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDD-YTPKQVGLSRILTSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E + L  +   + ++++  +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFAN---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
             RR+   E++         ++I +E   V ++  G+++     S + S    L  +E D
Sbjct: 477 -TRRSELQELAET-IEIDTASLIIEEDTYVSVTRGGYVKRTSPRSFNASTVDELGKREDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +L+ +  G     P   L     +  GE + Q L++   N++I+ A 
Sbjct: 535 ELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIYAE 594

Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKTF--LKVSS-EEKMKLVVKVTGDH 660
           + D   K     V+S G     E  EI    T K KT    K+ + ++ +  V  +  + 
Sbjct: 595 LVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQLED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           V +V  N  +L FSI+ +P +  +  GV+  + KD     ++   I    +      R  
Sbjct: 655 VILVTYNGYVLRFSINDVPVVGSKAAGVKAMNLKDS--DHIVSAFIANTTSLYLLTHRGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +     +     R   G  V +
Sbjct: 713 LKRMAIDVIPTTSRANRGLQVLR 735


>gi|332522736|ref|ZP_08398988.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314000|gb|EGJ26985.1| DNA topoisomerase IV, A subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 836

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/747 (28%), Positives = 388/747 (51%), Gaps = 26/747 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   
Sbjct: 15  LNMSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKG 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RY
Sbjct: 75  FRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRY 134

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++++  +LQ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT I
Sbjct: 135 TEARLSEISGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDI 194

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A + LID+P+  ++KL+E++ GPDFPTG I ++ ++ I ++Y  G+G   
Sbjct: 195 PPHNLAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSI-IQGQDEIRKAYETGKGRVV 253

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR++  +EE+  G   I+VTEIPY++ KS L++KI ++ +  ++P + ++RDES      
Sbjct: 254 VRSKTDIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     +  D   ++  +   +D++  +  NM  +      QV  +  IL  ++AHR+ +
Sbjct: 314 IAIELKKDADTQTVLNYLLKYTDLQVNYNFNMVAIDNYTPHQV-GIQKILSSYIAHRKSI 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           +  RS F M   ++R+ I++GL+     +DE+IA+IR   N+   K  +   ++ TE Q 
Sbjct: 373 IIERSKFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYAFTEEQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E + L      + +++      +N +  E+REVK+ F  
Sbjct: 433 EAIVTLQLYRLTNTDIVTLQNEEEELRNLITTLGAIIADEATMYNVMKRELREVKKKF-- 490

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
               G  R +  +           ++I +E   V ++  G+I+     S + S +     
Sbjct: 491 ----GNPRRSQLQKETETIEIDTASLIVEEETFVSLTQGGYIKRTSPRSFNASTIEEVGK 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDI 602
           ++ D L    +A TT  +L+ +  G     P   L   R    GE + Q + +  + + +
Sbjct: 547 RDDDRLIFVTNAKTTQHLLIFTDLGNVIYRPVHELQDIRWKEVGEHLSQTITNYGNEEKV 606

Query: 603 VTAFVYDSTCKLLV--VSSKGNAFIVEESEII---ANTRKGKTFLKVS-SEEKMKLVVKV 656
           + A + D    +    V+  G       +E+        K   + K+   ++++  V  +
Sbjct: 607 LYAELVDDFKSVTYYSVTQLGQIKRFARAELAPWRTYRSKSLKYAKLKNEQDRIIAVQPI 666

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             + + ++      L FS +++P    +  GV+  + K G           +    +   
Sbjct: 667 LFEDIMLISHQGYALRFSNEEVPVQGLKTAGVKAMNLKKGDYITSAFLAYTDSFFVLTQR 726

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G     +  D+      R   G LV +
Sbjct: 727 GSLKRVATEDI--PQTSRANRGLLVLR 751


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 211/760 (27%), Positives = 396/760 (52%), Gaps = 27/760 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G     
Sbjct: 2   TNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ G+G  
Sbjct: 182 IPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQTGKGRV 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+     
Sbjct: 241 VVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +  + + ++  +F  +D++  +  NM  ++  + P++M +  +L  ++ H++E
Sbjct: 301 RIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIN-RKRPELMGIIPMLDAYIDHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           ++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + +  +E Q
Sbjct: 360 IITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSEKQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ + 
Sbjct: 420 AEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEKILGDEAELIAVLKEELAEIKKKYK 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
            +      R T  +    +     + ++  E + V ++  G+++     S   S    L 
Sbjct: 480 TA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELA 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQD 601
            KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL+  ++
Sbjct: 534 MKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEE 593

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           I +A     +    + L V+  G       +        K    +K+  ++++  V  + 
Sbjct: 594 IRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLSVHLID 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDS 714
           G + + +  +N   L +SI +IPE   R  GV+  + K D  +   +     E    + +
Sbjct: 654 GSEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVVGGVVITPNEQKHILLA 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             R   +           R   G L+ +   +S   +F+ 
Sbjct: 714 TQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/756 (28%), Positives = 384/756 (50%), Gaps = 43/756 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + ER+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MSDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+L+ +D+D V+    +++ + EP V P++ PNL  NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A + L+ +PE  ++ L+ Y+ GPDFPTGGI ++  + I ++Y  GRG   
Sbjct: 181 PPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGI-IQGVDGIRKAYETGRGRVI 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA   +EE+  G   I+VTEIPY V K++L+++I +L + K++  + + RDE+      
Sbjct: 240 LRANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ D + ++  +   +D++  +  NM  +   R  +V  L   LK +LA ++E+
Sbjct: 300 IAIELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRV-GLKHYLKSYLAFQQEI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428
           + RR+ F +     R+ I++GL+ A   +D++I  IR     K       + +  T+ Q 
Sbjct: 359 ITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQFTQPQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   ++ E   L     + + +LN   +    +  E + + + F  
Sbjct: 419 EAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQNELNRVLVKEFKAIDKQF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HF 545
               G  R T  E          +  +  E + V++S+ G+I+     S   S L     
Sbjct: 477 ----GSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +   A T + + + +  G     P   L   +    GE I   I L  +++I+
Sbjct: 533 REDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEII 592

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS----------- 646
            A ++++      ++  +S G        ++   +R   +    +K+             
Sbjct: 593 KALIFENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYY 652

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFK 704
           E + + V          + ++   L F + ++P    R  GVR  + KD   + +++   
Sbjct: 653 EPQAQNVSLT------AISKHGYGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTA 706

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             + L  +   G       N+L   +G R   G LV
Sbjct: 707 DDDRLAIMTQRGAFKEMRANELE--VGSRARRGVLV 740


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 403/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSYNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  ++      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 394/752 (52%), Gaps = 30/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KS
Sbjct: 3   KIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L L  +P+ +++ L++++ GPDFPTG I V+  + I ++Y  GRG   VR++
Sbjct: 183 LGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAI-VQGIDGIKKAYETGRGKVIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      IVV+EIPY+V K++L+++I EL + K++  + ++RD+S  +   ++  
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D   ++  +F  +D++  +  NM  +   R  + + L  IL  +L  +REV+ +R
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPER-LSLKQILVSYLEFQREVIKKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+
Sbjct: 361 TQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +      
Sbjct: 421 ALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDS 550
              R T  +   A        +I  E + V++S+ G+I+     S   S      K+ D 
Sbjct: 475 RNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDY 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +  D + + ++ G     P   +     +  GE I   I L+++++I+  F +
Sbjct: 535 PIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAF 594

Query: 609 D---STCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVSSEEKMKLVVKVTGD--- 659
                    L+ +  G+    + +++    T K   ++  K+   +   + +    D   
Sbjct: 595 SSLKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADPDA 654

Query: 660 --HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWIDSA 715
              + ++ +    L + ID++P    R  GV+ Q+  DG + +++      + +  +   
Sbjct: 655 SGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVIAIVTQR 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           G     +  ++      R   G ++ +   ++
Sbjct: 715 GAFKKLAVKEI--PATSRARKGVMILRELKQN 744


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 383/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S ++  + I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEQRLLHVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++ +  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            E    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/751 (28%), Positives = 382/751 (50%), Gaps = 23/751 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1   MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RY
Sbjct: 61  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++ +A  +L+ +D++ V+F   +++   EPVV P+ FPNLL NG++GI+ G AT I
Sbjct: 121 TEARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I ++Y  G+G   
Sbjct: 181 PPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKKAYETGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R +  VE +  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++RDE+      
Sbjct: 240 IRGKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL  ++ H++EV
Sbjct: 300 IVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKILDAYIGHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS + ++  + R  I++GL  A   +DE+I  IR        K  + ++F  TE Q 
Sbjct: 359 VTRRSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTKFGFTEAQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +++ VK+ +S 
Sbjct: 419 EAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSD 478

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKSHSVDLSALHF 545
                  R    E    +     + MI +E + V ++  G+++       ++ +      
Sbjct: 479 D------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGM 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KEGD L      +TT+ +LL +  G    LP   +     +  G+ +  L+ L  ++ I+
Sbjct: 533 KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMII 592

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG 658
            A V     +    ++ V+  G     E ++  +    +    + +  ++ +  +    G
Sbjct: 593 WATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDG 652

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              + +       LIF  D++  +  R  GV+  + K+            +    I    
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQ 712

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           R   +           R   G ++ K   R+
Sbjct: 713 RGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 215/759 (28%), Positives = 403/759 (53%), Gaps = 30/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RR+++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            +    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VYNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK--ICEGLTWIDSA 715
            +  V+      L ++  ++ +   R  GV+  + K   + D +     + E  T + + 
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLK---VEDFVVMTEGVSENDTILMAT 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +  +  +  + KR   G  + K   ++  + +++
Sbjct: 709 QRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 216/759 (28%), Positives = 403/759 (53%), Gaps = 30/759 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V K  L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLRDIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            +    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VYNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK--ICEGLTWIDSA 715
            +  V+      L ++  ++ +   R  GV+  + K   + D +     + E  T + + 
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLK---VEDFVVMTEGVSENDTILMAT 708

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            R   +  +  +  + KR   G  + K   ++  + +++
Sbjct: 709 QRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  +   L FS   +P    +  GV+  + K+     V  F +     ++ +   S 
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNED-KLVSTFSVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  +   L FS   +P    +  GV+  + K+     V  F +     ++ +   S 
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNED-KLVSTFSVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/822 (29%), Positives = 403/822 (49%), Gaps = 107/822 (13%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  ++P+ISIE L+E+I GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYANDPQISIEGLMEHISGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE    G   IV TEIPYQV K++ IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F  + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418
           + F ++    R  IL+GL +A  NID II  I++   P                      
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423

Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV+AI+ LRL  L  LE+ ++ +E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L++  ++ ++LN      N I  E+  + + +  +     R+T+  E         ++ 
Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RKTSIVESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   KE D ++  +   +   +L 
Sbjct: 536 LIPEEQMVLTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKL------LV 616
            +  GK Y L    +   S    G  +  L+ L+ N+ I     V D+  K         
Sbjct: 596 FTNVGKVYRLKVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKERLAAFK 655

Query: 617 VSSKGNAFIVEESEIIAN---------------------------TRKGKTFLKVSSEEK 649
              K NA  ++ +E+I                              + G        ++ 
Sbjct: 656 AFVKANAAQLQANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDD 715

Query: 650 MKLVVKVTGD------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVIC 702
           +        +      +V +  E   +    ++Q   + R  G+R      D  +  V  
Sbjct: 716 IINDFAQQAEAVRKNFYVFMATEYGTIKRVELEQFSNV-RSNGLRAIELNGDDTLIGVAI 774

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
               + +    + G++   +E D+      R   G    +  
Sbjct: 775 TDGEQQIMLFSNEGKAIRFAETDV--RSMGRSAKGVRGMRVT 814



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 100/298 (33%), Gaps = 42/298 (14%)

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + A   ++++ L   +   + I+  +R   +            T   +    D A   +A
Sbjct: 671 INAHFAELEAALTESEDGADDISDALRIQLKQLGLELSA----TDLDDDIINDFAQQAEA 726

Query: 514 MIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           + +   +  + +  G I+ +         S  L A+     D+L          +I+L S
Sbjct: 727 VRKNFYV-FMATEYGTIKRVELEQFSNVRSNGLRAIELNGDDTLIGVAITDGEQQIMLFS 785

Query: 568 TDGKAYTLPAGNLLSG-------RGHGEAIQLLIDLNHNQD------------------I 602
            +GKA      ++ S        RG    I     L  N +                  I
Sbjct: 786 NEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGSDSALISRI 845

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTG 658
           V+  V   T ++L  S  G        +     R GK  + + + E+    +  V     
Sbjct: 846 VSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVGAVAIDAS 905

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDS 714
             + ++ +   L+     ++ +  R  +GVRL     +  +  V+  +  E   ++++
Sbjct: 906 KELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAVEEDEFVEA 963


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 402/757 (53%), Gaps = 26/757 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++ + I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 359 ANRTKFELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +    ++ M+  E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKKNDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
              +  +  +  + KR   G  + K   ++  + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 747


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 229/756 (30%), Positives = 403/756 (53%), Gaps = 25/756 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + NV    L   L + YL+Y++S I  RAIPD+RDG KPV RRII++M E+GL     FK
Sbjct: 18  QNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ARIVGEV+GK HPHGD S+Y++LVR+AQP++ RY L+ GQGNFG+ID D  AA RYTE
Sbjct: 78  KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYTE 137

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ ++AE +++ +D+  V   D ++    EP V P+K PNLL NG SGIAVGMAT+IP+
Sbjct: 138 ARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIPT 197

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ ++ +A +A I N +IS+E+L++ I GPDFPTG  I+  +  I E Y  G+GGF +R
Sbjct: 198 HNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTG-GIIIGKSGIREMYITGKGGFTIR 256

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  ++   +    I++TEIPY + K+ LI++IA+ +  + IP ++D+RDES +D   V+
Sbjct: 257 GKAEIKHEKKKK-SIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 +  ++++ +++  ++++TRF  N  V+   + P++M L  +++ ++ HR EV+ 
Sbjct: 315 IEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDA 430
           +R+ +  Q   +R  I++GL+ A   ID +++IIR+       +        ++E Q  A
Sbjct: 375 KRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQAKA 434

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL  L  LE   ++ E  +LL   EK   LL +  + +  I  E+ E+K+ +    
Sbjct: 435 VLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGDP- 493

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSA 542
               R+T   ++        ++ +I  + I + ++ +G+++        + + +   +  
Sbjct: 494 ----RKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGVIG 549

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQ 600
            +  E D +   +++    + L  ++ GK Y +   ++        G+ I   I L + +
Sbjct: 550 ANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLENGE 609

Query: 601 DIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            ++    + D   +L  V+ KG        +    T KG   +     +++  V+++  +
Sbjct: 610 RVLAMVDITDYVGELFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSE 669

Query: 660 H--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
              V +  +    + F I+++  M R   GVR    ++G           +    +    
Sbjct: 670 SNTVLISTKLGMSIRFGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITE 729

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             Y +           R G+G        ++G  + 
Sbjct: 730 NGYGKLTEVSDYRKQSRDGLGIKNIGEIEKTGPIVG 765



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 90/234 (38%), Gaps = 12/234 (5%)

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           EI  +    S     G+    + ++   ++      + +       ++ +G ++      
Sbjct: 581 EIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYVGELFFVTKKGVVKRTSLED 640

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNLLSGRGHGEAI 590
                   + A+ FK+GD L   L  ++    +L+ST  G +       + +   +   +
Sbjct: 641 FKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMGRNAAGV 700

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK- 649
           + +     ++ I +  + +    +L ++  G   + E S+    +R G     +   EK 
Sbjct: 701 RGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNIGEIEKT 760

Query: 650 --MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
             +  V  V GD  + +  ++   + F +  IP  SR  +GV++ +  DG I  
Sbjct: 761 GPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVA 814



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHA-HTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R++  ++  +  +  +EGD +  +    +    IL ++ +G        +       G 
Sbjct: 690 VRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGL 749

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS 646
            I+ + ++     IV     +   ++++ +  G +   + S+I   +R  +G   + ++ 
Sbjct: 750 GIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLAD 809

Query: 647 EEKMKLVVKVTGDH 660
            + +     + G+ 
Sbjct: 810 GDIVADFAVIGGEE 823


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/783 (30%), Positives = 395/783 (50%), Gaps = 56/783 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 21  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 80

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 81  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 140

Query: 137 TQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +  + +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN
Sbjct: 141 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+   + I ++YR G+G   VR  
Sbjct: 201 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEII-PTQGIEDAYRHGKGIISVRGV 259

Query: 256 WCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES    
Sbjct: 260 VRIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSG 319

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R      ++  ++  + ++  F   M  L   + P+ + L  +L+E+L  R 
Sbjct: 320 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQ-PRQLSLRQLLEEFLKFRE 378

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
             L R+ ++ ++    R+ +L+GLLIA  N+D II I+RN       K       +L+E 
Sbjct: 379 HTLTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQELNLSEA 438

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  +
Sbjct: 439 QANGILAMPMRRLTGLERQKLQAEYDELQGRINELENLLNNRPEFLKVLKKELRSLKRKY 498

Query: 487 SKSTDLG-----------------------RRRTTFCEVSRAD----KATLQQAMIEKEP 519
                                         + +TT       D      +L       + 
Sbjct: 499 GDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTTSISNREPDTTSQPFSLFTPQTPPKN 558

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             + ++ +G I      +         +      +      ++ ++++  GKAY +   +
Sbjct: 559 AILEMTYQGTICWRSPDT------KVPDNHVPIYSEPIQEREQFIVITDIGKAYPVNVAD 612

Query: 580 LLSGRGHGEAIQLLIDL---NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIA 633
           +         +  L+       ++ +V+ F          LL+++++G    ++ SE+  
Sbjct: 613 VPPIEIQPIPLLSLLPKSAQRDSKKVVSLFFLSDNTENKDLLLLTNQGKIKRIQLSELAG 672

Query: 634 NTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS-IDQI-PEMSR-GKGVRL 689
            T +G   +K+  ++ ++ V     G+ VA+   + ++L F  +D++ P M R  +G + 
Sbjct: 673 LTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQA 732

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              +  G + + C  + +    +  +   Y +  N     + K G +G+   +   ++  
Sbjct: 733 LKLR-YGETIIGCVTLDDNKIVLLVSKLGYGKRLNVTGLRMTKLGDIGTQALQFTHKNDS 791

Query: 750 FLS 752
            L 
Sbjct: 792 LLG 794



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 72/201 (35%), Gaps = 20/201 (9%)

Query: 517 KEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +    ++++N+G I+ ++        +  L  +  K+ D L+        + + +  + G
Sbjct: 649 ENKDLLLLTNQGKIKRIQLSELAGLTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSG 708

Query: 571 KAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
           +    P  +    ++     G      + L + + I+     D    +L+VS  G    +
Sbjct: 709 RVLRFPVVDEVIPIMGRNAQGN---QALKLRYGETIIGCVTLDDNKIVLLVSKLGYGKRL 765

Query: 627 EESEIIANTRKGKTFL-----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
             + +   T+ G            ++  + ++       + ++   +K L      +   
Sbjct: 766 NVTGLRM-TKLGDIGTQALQFTHKNDSLLGMIRASDSKDITLLTNQKKTLNIVAKDVKIW 824

Query: 682 SR-GKGVRLQSYKDGGISDVI 701
            + G+G RL    +  + D +
Sbjct: 825 GKDGQGDRLVKLSNQEVIDYV 845


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 404/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG   +  ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGA-TIYGKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+             ++ +I  E + + ++   +++              +   
Sbjct: 520 -----RRSEIIPEIDC---LDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTL 571

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A +  + D LK     +T   +L++S+  K + L A  +  G  +G G  I  LI L  N
Sbjct: 572 ASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKN 631

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I     ++       L+ VS+ GN      S     T+ GK  LK+   + +      
Sbjct: 632 ESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIA 691

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             +   ++ +      +  +SI  + +  R   GV+    ++G      CF   +     
Sbjct: 692 PNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNHFIF 750

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + + + +        L  R   G +      ++G  +
Sbjct: 751 SLSKKGFGKKTQVGEYRLTGRTTKGLMSL-DAKKAGNLV 788



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 144/437 (32%), Gaps = 39/437 (8%)

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS-DMETRFPLNMNVLSMGRVPQ 353
           +  ++   +   E ++I+   K+     + L  +  + S   +    + +  L+   + +
Sbjct: 417 LEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTKAIIEMRLGRLTSLAIEK 476

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +      LK  ++  + ++   S  ++  +                  EII  I   D+ 
Sbjct: 477 LNNEIEELKVEISEIKSIID--SPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEE 534

Query: 414 KPVMVSRFSLTENQVDAILNLRL--RSLRK------LEEYQIKS-ELDNLL--AEKEKID 462
             +   +  ++  Q + +  + L    L+       L     K  EL +L        + 
Sbjct: 535 DLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLL 594

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--I 520
            +++S  + +      +R  +         G       ++ + +  +      ++     
Sbjct: 595 -IISSSAKIFK-----LRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHW 648

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA-HTTD-RILLLSTDGKA 572
            + +S  G I+     +          AL   E D L  A  A +  D  IL+ S+ G  
Sbjct: 649 LITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFV 708

Query: 573 --YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
             +++           G      I L     I+ A        +  +S KG     +  E
Sbjct: 709 NRWSIKLLRDSGRTAIGVKG---IKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGE 765

Query: 631 IIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKG 686
                R  K  + + ++    +  +  +  +  A++       +   +D +P +SR  KG
Sbjct: 766 YRLTGRTTKGLMSLDAKKAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKG 825

Query: 687 VRLQSYKDGGISDVICF 703
           V++ + K G     +  
Sbjct: 826 VKIITLKKGDEITAVSL 842



 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R     ++ +  +  +EG  +  A  A     I  LS  G  K   +    L      G
Sbjct: 716 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKG 775

Query: 588 EAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLK 643
                L+ L+  +     F+    +  + ++ + KG A  ++     II+   KG   + 
Sbjct: 776 -----LMSLDAKKAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIIT 830

Query: 644 VSSEEKMKLVVKVTGDH 660
           +   +++  V  ++ + 
Sbjct: 831 LKKGDEITAVSLISKNE 847


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 215/752 (28%), Positives = 394/752 (52%), Gaps = 30/752 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +SL   + ER+  Y+ S I+ERA+PD+RDG KPV RRI++AM++ G  +  AF+KS
Sbjct: 3   KIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ +D+D VD+   +++ + EP V PS+FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A L L  +P+ +++ L++++ GPDFPTG I V+  + I ++Y  GRG   VR++
Sbjct: 183 LGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAI-VQGIDGIKKAYETGRGKVIVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      IVV+EIPY+V K++L+++I EL + KR+  + ++RD+S  +   ++  
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D   ++  +F  +D++  +  NM  +   R  + + L  IL  +L  +REV+ +R
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPER-LSLKQILVSYLEFQREVIKKR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + F +Q    R  I++GL+ A   +D++I  IR   N    +  +V  +  +E Q DAI+
Sbjct: 361 TQFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKTYQFSEKQSDAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q++ E   L  +      +L   K+    +A E+R + + +      
Sbjct: 421 ALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPKELNKVLARELRAIAKNY------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDS 550
              R T  +   A        +I  E + V++S+ G+I+     S   S      K+ D 
Sbjct: 475 RNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENGLKDEDY 534

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +  D + + ++ G     P   +     +  GE I   I L+++++I+  F +
Sbjct: 535 PIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAF 594

Query: 609 D---STCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL--KVSSEEKMKLVVKVTGD--- 659
                    L+ +  G+    + +++    T K   ++  K+   +   + +    D   
Sbjct: 595 SSLKEKGLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADLDA 654

Query: 660 --HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI-SDVICFKICEGLTWIDSA 715
              + ++ +    L + ID++P    R  GV+ Q+  DG + +++      + +  +   
Sbjct: 655 SGKLLLISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVIAIVTQR 714

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           G     +  ++      R   G ++ +   ++
Sbjct: 715 GAFKKLAVKEI--PATSRARKGVMILRELKQN 744


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 225/769 (29%), Positives = 393/769 (51%), Gaps = 48/769 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      +K
Sbjct: 4   NEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTE
Sbjct: 64  KSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P 
Sbjct: 124 IKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGGI +   E + E++  GRG   +R
Sbjct: 184 HNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGI-IYGYEGVKEAFLTGRGKILLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++   E++ +   CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  +   ++
Sbjct: 243 SKVHFEKI-KFRTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F   ++++  LL+ ++F  + +ET F +N   L  G+  + + L  ++K ++ HR  V+ 
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTK-LNLKYLIKHFVNHRHNVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + +     R  I++G  +   +++ +I +I++       K  +++++ L+E QV +
Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQVQS 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +    
Sbjct: 421 ILELKLNSLTKLESEKIKEEFIKLNKKISSYKRILNDKFLQKKIIKKELKIIKEKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------- 541
               RRT        D   L+ ++   + + +  S  G+++    +   +          
Sbjct: 479 ---SRRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKNIGVGGIVN 529

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
             A   K+ D +K  L A+T   +L  +  GK + L    +        G AIQ LI ++
Sbjct: 530 MGAYKLKK-DFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEVYKTSKGRAIQNLIKID 588

Query: 598 HNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
               I ++ +        Y +   +++++  G        +     + G   +K+   + 
Sbjct: 589 KKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSKPNKNGINAIKIKKGDA 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS----YKDGGISDVICF 703
           +       G   + +  ++ K + FS   +  M+R   GV+  +         +  +IC 
Sbjct: 649 LIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMTRITLGVKSITLSKLLSKDKVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +  +   + +  N            G        ++G  ++
Sbjct: 709 NDPKKEYILVISENGFVKISNLSHYRKTD---QGIKTINITSKTGCLVA 754



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 163/474 (34%), Gaps = 43/474 (9%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAE 307
           ++  ++ ++        +++    Y + K++    I E   L++     ++E I+     
Sbjct: 341 KLNLKYLIKHFVNHRHNVIIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDR 400

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLA 366
           +   +       L    +   + +  +  T+           ++ + +     IL +   
Sbjct: 401 ENAKIKLLNKYKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRILNDKFL 460

Query: 367 HRREVLFRRSSFRMQAID-RRVEILK-GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
            ++ +       + +  D RR EI   GL  +     +++     +   K   ++ + + 
Sbjct: 461 QKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIK 520

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
              V  I+N+    L+K     I      L+A   +         + +     EI EV +
Sbjct: 521 NIGVGGIVNMGAYKLKKDFIKHI------LVANTHQYMLFFTEKGKCFWLRVFEIPEVYK 574

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------KEPITVVISNRGWIRSLKSHS 537
                T  GR      ++ + DK      + +            ++I+  G I+      
Sbjct: 575 -----TSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQ 629

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEA 589
                   ++A+  K+GD+L  A   +    IL+    GKA       +        G  
Sbjct: 630 YSKPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMTRITLGVK 689

Query: 590 IQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
              L  L     ++     +      +LV+S  G   I   S     T +G   + ++S+
Sbjct: 690 SITLSKLLSKDKVIGMICINDPKKEYILVISENGFVKISNLSHY-RKTDQGIKTINITSK 748

Query: 648 EKMKLVVK--VTGDHVAVVGENRKLLIFSIDQ----IPEMS--RGKGVRLQSYK 693
               + +K  V  D + ++ ++   +   + +    +      +GKG++L + K
Sbjct: 749 TGCLVAIKNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKGNKGKGIKLINLK 802


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 404/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 57  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG   +  ++ I ++Y  G+G F +
Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGA-TIYGKKGINQAYLTGKGSFII 295

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 474

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 534

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+             ++ +I  E + + ++   +++              +   
Sbjct: 535 -----RRSEIIPEIDC---LDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTL 586

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A +  + D LK     +T   +L++S+  K + L A  +  G  +G G  I  LI L  N
Sbjct: 587 ASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKN 646

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I     ++       L+ VS+ GN      S     T+ GK  LK+   + +      
Sbjct: 647 ESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIA 706

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             +   ++ +      +  +SI  + +  R   GV+    ++G      CF   +     
Sbjct: 707 PNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAF-DNHFIF 765

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + + + +        L  R   G +      ++G  +
Sbjct: 766 SLSKKGFGKKTQVGEYRLTGRTTKGLMSL-DAKKAGNLV 803



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 144/437 (32%), Gaps = 39/437 (8%)

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS-DMETRFPLNMNVLSMGRVPQ 353
           +  ++   +   E ++I+   K+     + L  +  + S   +    + +  L+   + +
Sbjct: 432 LEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTKAIIEMRLGRLTSLAIEK 491

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +      LK  ++  + ++   S  ++  +                  EII  I   D+ 
Sbjct: 492 LNNEIEELKVEISEIKSIID--SPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEE 549

Query: 414 KPVMVSRFSLTENQVDAILNLRL--RSLRK------LEEYQIKS-ELDNLL--AEKEKID 462
             +   +  ++  Q + +  + L    L+       L     K  EL +L        + 
Sbjct: 550 DLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLL 609

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--I 520
            +++S  + +      +R  +         G       ++ + +  +      ++     
Sbjct: 610 -IISSSAKIFK-----LRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHW 663

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA-HTTD-RILLLSTDGKA 572
            + +S  G I+     +          AL   E D L  A  A +  D  IL+ S+ G  
Sbjct: 664 LITVSAFGNIKKTALSAFRNITKNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFV 723

Query: 573 --YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
             +++           G      I L     I+ A        +  +S KG     +  E
Sbjct: 724 NRWSIKLLRDSGRTAIGVKG---IKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGE 780

Query: 631 IIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKG 686
                R  K  + + ++    +  +  +  +  A++       +   +D +P +SR  KG
Sbjct: 781 YRLTGRTTKGLMSLDAKKAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKG 840

Query: 687 VRLQSYKDGGISDVICF 703
           V++ + K G     +  
Sbjct: 841 VKIITLKKGDEITAVSL 857



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R     ++ +  +  +EG  +  A  A     I  LS  G  K   +    L      G
Sbjct: 731 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKG 790

Query: 588 EAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLK 643
                L+ L+  +     F+    +  + ++ + KG A  ++     II+   KG   + 
Sbjct: 791 -----LMSLDAKKAGNLVFISAIKNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIIT 845

Query: 644 VSSEEKMKLVVKVTGDH 660
           +   +++  V  ++ + 
Sbjct: 846 LKKGDEITAVSLISKNE 862


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  +   L FS   +P    +  GV+  + K+     V  F +     ++ +   S 
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNED-KLVSTFSVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/751 (30%), Positives = 407/751 (54%), Gaps = 27/751 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L+++I GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKHIKGPDFPTG-GIIQGIDGIKKAYETGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   EE+  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
             R+ + +   ++R+ I++GL+ A   +DE+I +IRN       K  +V+ F  TE Q +
Sbjct: 359 TNRTRYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFDFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +K+ ++L+      + I  E+ E+K+ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHDALLSVIKDELNEIKKKFKVD 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   ++    ++ M+  E + + +S+ G+I+   + S + S    +  K
Sbjct: 479 ------RLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD L      +T D +L+ +  G+   +P   L   R    G+ +  ++ ++ ++ +V 
Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
            +    ++S    ++ +  G       S+    TR  K    +KV   +++  V+++  D
Sbjct: 593 VYNEKDFNSDAFYVMATKNGMIKKSSVSQF-KTTRFNKPLVGMKVKDHDEIVNVIRLESD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVI-CFKICEGLTWIDSAG 716
            +  V+      L +S  ++ +   R  GV+  + KD     +       + +  I   G
Sbjct: 652 QLITVLTHKGMSLTYSTSELSDTGLRAAGVKSINLKDEDYVVMTESVSDSDSILMITQRG 711

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                S   L   + KR   G  + K   ++
Sbjct: 712 AIKRISYKVLQ--VAKRAQRGITLLKELKKN 740


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 208/765 (27%), Positives = 390/765 (50%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRIVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKILGDESELIAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +         R T  +   ++     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTP------RRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+   +++  
Sbjct: 589 SAGEEIRSAIAIQTFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDNDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K D  +   +     +  
Sbjct: 649 VNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQDDIVIGGVILAPNDTK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 209/752 (27%), Positives = 366/752 (48%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+PE  +  L+ YI GPDFPTGGI ++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPEAPLSALMRYIKGPDFPTGGI-IQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTEISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+  + + ++  +F  +D++  +  NM  +   R   V  L   L+ +L  R+EV+
Sbjct: 300 VIELNKGTNAEGILTYLFKKTDLQISYNFNMVAIHNQRPVTV-NLKQGLQAFLDFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            +RS+F +     R  I++GL+     +DE++A IR     K        +F  T+ Q +
Sbjct: 359 LKRSAFELAKAQARQHIVEGLIRMLSILDEVVATIRASQNRKDATQNLIDKFQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q+++E   L A+   ++ +L       + I  E+  + + ++  
Sbjct: 419 AIVTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTEESALKDVIRDELTAITKTYTTP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--HFKE 547
                 R +  E    D        I +E + V++S  G+ +     S   S       +
Sbjct: 479 ------RRSQIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSYKASDADNGLAD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVT 604
            D        +TT  + + +  G     P   L     +  GE   Q L +   ++ ++ 
Sbjct: 533 DDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWKDTGEHFSQQLANWRPDEYVIQ 592

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVK---- 655
               D+  +     +V++ G       ++++    K KT   +K+ +++   + V     
Sbjct: 593 VVAVDNLTQGGAFTIVTNDGFIKQTTLADMVPKAYKKKTSMAIKLKTDDSQVVNVAYTPT 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           VT   V ++  N   L F +  +PE+  R  GV+    +                     
Sbjct: 653 VTDQDVLLLSHNGVGLRFGLSDVPEIGARTAGVKAMDLRGDDTIQAALMVTSPDQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 AENGAFKYMPVAEINHSKRANKGLLIF--TQK 742


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/743 (29%), Positives = 397/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  +   L FS   +P    +  GV+  + K+     V  F +     ++ +   S 
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNED-KLVSAFSVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/743 (29%), Positives = 396/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+  +EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + +++      +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +    ++I+ A 
Sbjct: 535 ELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V  +   L FS   +P    +  GV+  + K+     V  F +     ++ +   S 
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNED-KLVSAFSVTSNSFFVLTQRGSL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 222/762 (29%), Positives = 401/762 (52%), Gaps = 34/762 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI+ AM + G    + F+KSA
Sbjct: 4   IQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG VIG  HPHGD SVY+++VR++Q +  R  L+   GN G++DGDSAAA RYTEAR+
Sbjct: 64  KTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEARL 123

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A+ +L+ +D+D V+    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 124 SKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 183

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            EI +A   LID+P  +I KL++++ GPDFPTG I ++ +E + ++Y  GRG   VR++ 
Sbjct: 184 GEIIDATTYLIDHPNATINKLMDFVPGPDFPTGAI-IQGKEELKKAYTSGRGKVVVRSKH 242

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E    G   IV+TEIPY+V K+ L+ ++ EL + + I  ++++RDE+  +   ++   
Sbjct: 243 HIETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIEL 302

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +    D ++   +  SD++  +  NM  ++    P+++ +   L  ++ HR E++ RR+
Sbjct: 303 KKDASSDAILNYFYKNSDLQINYNFNMVAINDQ-RPELVGIREALNAYIGHRYEIIRRRT 361

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
           +F +    RR+ I+ GL+ A   +D++IA IRN       +  ++  F  +E Q +AI++
Sbjct: 362 TFDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRYNLIEAFDFSEAQAEAIVS 421

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   +++E   L  +     ++L+  K  + ++  E++ +K+ ++      
Sbjct: 422 LQLYRLTNTDVTALENERLQLNEDIAAYQAILSDDKVLYGRMKSELKAIKKAYA------ 475

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDS 550
             R T  +    +    +Q +I +E + VV++  G+I+     S   S +     ++GD 
Sbjct: 476 SERRTEIQDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKRSSLRSFKASGIEEVGLRDGDH 535

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
           ++      T D+++ ++  G     P   L     +  GE +   I    ++ I+  F Y
Sbjct: 536 VQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIRWKDLGEHVSQRIAFASDESIIGVFKY 595

Query: 609 DSTCK--LLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSE-EKMKLVVKVTG---- 658
           D   K  LL+ S+ G       SE         K    + +SS+ +++  V ++ G    
Sbjct: 596 DENSKDNLLLASAAGMIKQTALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGATDQ 655

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK--DGGISDVICFKICEGLTWID 713
               V +V      L +SID+I  +  R KGV+  + K  D  +         + L  + 
Sbjct: 656 SQAQVILVTHFGFTLRYSIDEISIIGVRAKGVKSINLKQDDYVVGLSYAAVPDDNLQLMM 715

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              R + +        +  R   G +  K   +S   +F+++
Sbjct: 716 VTQRGHMKRLKWAEINVLGRAKRGLVALKEL-KSNPHRFVAA 756


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 226/758 (29%), Positives = 381/758 (50%), Gaps = 39/758 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++   +   S    + +R+  YA   I  RAIPD RDG KPV RRI++AM + G      
Sbjct: 1   MLSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG V+G  HPHGD ++Y+++VR+AQ +  R  LI G GNFG++D D  AA RY
Sbjct: 61  YRKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R++ +A  +L+ +++D V F   Y+    +P V PS+FPNLL NG +GIAVG AT I
Sbjct: 121 TESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +AA+A + NP IS+++L++++ GPDFPTGGI V+    I +++  GRG F 
Sbjct: 181 PTHNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGI-VQGLSGIRKAFETGRGQFI 239

Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309
           +R +  VEE   G    IVV+EIPY+V KS+L+ +I EL++ ++I     +RDE+     
Sbjct: 240 IRGKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEA 299

Query: 310 ----RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  D   ++  ++  +D++  +  NMNV+  G + + M L  +L  ++
Sbjct: 300 EQKKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTI-RQMGLKALLGAYI 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++EV+  R  + +     R  I++GL+ A   + +I+  I + +     K  ++ ++ 
Sbjct: 359 DHQKEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYG 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+NQ DAIL+++L SL +L+  +++ EL  L  E E++ S+L S K+    I  E+ E+
Sbjct: 419 FTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNEI 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++        R T  +    +        I  E   V ++N G+I+     S     
Sbjct: 479 KKKYA------EERLTEIQGEIEEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVG 532

Query: 543 LHF-----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595
                   KEGD ++  +  +T+   L  + DGK +            +  G A+  +I 
Sbjct: 533 GTLETCGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIP 592

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           L  NQ IV   +   +     +  VS  G       SE   N        K+   +   +
Sbjct: 593 LEKNQRIVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYETNRSSALVAAKLKGGDDEFM 652

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGL 709
            V V  +   +    ++   + F   ++    R   GV+  +   G   DVI     E +
Sbjct: 653 NVFVADEAGAILGATKDGMGIRFQRSEVSATGRASSGVKAIALAPG--DDVITMLPIEEV 710

Query: 710 -----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                + + + G    +        L  R G G  + +
Sbjct: 711 DSRAFSLLTAEG--VVKRTAIGAIPLQARAGKGVQLIR 746


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/749 (31%), Positives = 387/749 (51%), Gaps = 31/749 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+G
Sbjct: 5   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 65  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 124

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +++ ++++ V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++  HN+ EI 
Sbjct: 125 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEIS 184

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  ID+P+ S+E LL+++ GPDFP GG+I  +   ++  YR G G    +     EE
Sbjct: 185 DAIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRN-SDLLNIYRTGHGKVFCQGEIDDEE 243

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    I++  +PY V K+  I+ +AE +    I  + DIRDES  +   V+       
Sbjct: 244 KKK----IIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDD 299

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
              L +  ++  + +ET   +N  VL     P+VM LD ++  ++  R E++ +RS F +
Sbjct: 300 SKGLTINQLYEHTPLETTIGVNNLVLLNNE-PKVMTLDEMILGFIDFRLEIIRKRSVFEV 358

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  R  IL GL+IA  NID +I IIR   N D  K  ++ + SL+E Q  AIL++RL+
Sbjct: 359 NKLMDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQLSLSEKQALAILDMRLQ 418

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L  LE  +I  EL ++    E+++ ++N+  ++ + +  E  E+K+ F        RRT
Sbjct: 419 RLTGLEIKKINDELISIKENIERLNEIINNESKRRDVLKQETLEIKKQFGD-----VRRT 473

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LHFKEGDS 550
                +R   A   + +I  E   +++S  G ++ + S   ++            ++ D+
Sbjct: 474 KVL--NRDINARNDEDIIPNEESIMILSENGLLKRVSSEEYNVQKRGGKGTITATRKEDT 531

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF-- 606
           ++  L   + D I   +  G+     A  +   S    G      + +N N+ I      
Sbjct: 532 VRSILSCMSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVGGTFLKMNENEKIKQIMKS 591

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVG 665
                  L++++ KG        EI+     G   +K+  ++++  V+ +     + V  
Sbjct: 592 PASPKNFLIIITKKGFIKRTPVKEILDMRESGLKIIKLDDQDEVVSVMDLEKPSKIFVAA 651

Query: 666 ENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
            N K  +F  D++    R  +GV+       G   +  F + +  T +        +   
Sbjct: 652 SNNKAAVFLSDEVSSTGRASRGVKSMRL--NGAEVINSFLVDDNDTVMSITENGLGKRTK 709

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                +  RG  G+L+ K   R+G  +++
Sbjct: 710 ITDFSIHHRGSSGNLIFKESERTGSLVTA 738



 Score = 41.3 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 66/211 (31%), Gaps = 13/211 (6%)

Query: 455 LAEKEKIDSLL---NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           + E EKI  ++    S K     I  +    +    +  D+        ++   D+    
Sbjct: 579 MNENEKIKQIMKSPASPKNFLIIITKKGFIKRTPVKEILDMRESGLKIIKLDDQDEVVSV 638

Query: 512 QAMIEKEPITVVISNRGW-------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
             + +   I V  SN          + S    S  + ++    G  +  +      D ++
Sbjct: 639 MDLEKPSKIFVAASNNKAAVFLSDEVSSTGRASRGVKSMRL-NGAEVINSFLVDDNDTVM 697

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G        +            +  +      +VTA     + ++L+V+      
Sbjct: 698 SITENGLGKRTKITDFSIHHRGSSGNLIFKESERTGSLVTALPVGDSQEVLIVTRNNKTI 757

Query: 625 IVEESEIIANTR--KGKTFLKVSSEEKMKLV 653
            +   EI   +R   G   + V  ++ +   
Sbjct: 758 RLNSDEIKIQSRVTSGVKLINVDDDDLVVAA 788


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 403/759 (53%), Gaps = 32/759 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+  + +   ++  +L Y++S I  RA+PD+RDG KPVHRRI++ M+E+G+  G ++
Sbjct: 42  ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF  RYPL+ G GNFG+IDGD AAA RYT
Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++  +++G+ ++ VDFR  Y+  + EP V P+KFPNLL +G SGIAVGM T IP
Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ EI  + +    NP+I I +L+  + GPDFPTG   +  ++ I ++Y  G+G F +
Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGA-TIYGKKGINQAYLTGKGSFII 280

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E +  G   I+  EIPY+V+K  +IEK+A L+  K+I  ++D+RDES+     V
Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +F   +   P++++  ++  +D++  + +NM  L  G VP++M L  I   +L H++E+ 
Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            R  +F ++    ++ +L+G+ +A  NIDE+I II++       +  +   ++L   Q  
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L  L   ++ +E++ L  E  +I S+++S K+  + I  + + V   F   
Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDP 519

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RR+             ++ +I  E + + ++   +++              +   
Sbjct: 520 -----RRSEIIPEIDC---LDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTL 571

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599
           A +  + D LK     +T   +L++S+  K + L A  +  G  +G G  I  LI L  N
Sbjct: 572 ASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKN 631

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I     ++       L+ VS+ GN      S     T+ GK  LK+   + +      
Sbjct: 632 ESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIGLKLVENDYLVSAFIA 691

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
             +   ++ +      +  +SI  + +  R   GV+    ++G      CF         
Sbjct: 692 PNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNF-IF 750

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + + + +        L  R   G +      ++G  +
Sbjct: 751 SLSKKGFGKKTQVGEYRLTGRTTKGLMSL-DAKKAGNLV 788



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 143/437 (32%), Gaps = 39/437 (8%)

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS-DMETRFPLNMNVLSMGRVPQ 353
           +  ++   +   E ++I+   K+     + L  +  + S   +    + +  L+   + +
Sbjct: 417 LEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTKAIIEMRLGRLTSLAIEK 476

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +      LK  ++  + ++   S  ++  +                  EII  I   D+ 
Sbjct: 477 LNNEIEELKVEISEIKSIID--SPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEE 534

Query: 414 KPVMVSRFSLTENQVDAILNLRL--RSLRK------LEEYQIKS-ELDNLL--AEKEKID 462
             +   +  ++  Q + +  + L    L+       L     K  EL +L        + 
Sbjct: 535 DLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLL 594

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP--I 520
            +++S  + +      +R  +         G       ++ + +  +      ++     
Sbjct: 595 -IISSSAKIFK-----LRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHW 648

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA-HTTD-RILLLSTDGKA 572
            + +S  G I+     +           L   E D L  A  A +  D  IL+ S+ G  
Sbjct: 649 LITVSAFGNIKKTALSAFRNITKNGKIGLKLVENDYLVSAFIAPNNPDLNILIGSSQGFV 708

Query: 573 --YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
             +++           G      I L     I+ A        +  +S KG     +  E
Sbjct: 709 NRWSIKLLRDSGRTAIGVKG---IKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGE 765

Query: 631 IIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGE-NRKLLIFSIDQIPEMS-RGKG 686
                R  K  + + ++    +  +  +  +  A++       +   +D +P +S R KG
Sbjct: 766 YRLTGRTTKGLMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRRTKG 825

Query: 687 VRLQSYKDGGISDVICF 703
           V++ + K G     +  
Sbjct: 826 VKIITLKKGDEITAVSL 842



 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHG 587
           +R     ++ +  +  +EG  +  A  A   + I  LS  G  K   +    L      G
Sbjct: 716 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKG 775

Query: 588 EAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLK 643
                L+ L+  +     F+    +  + ++ + KG A  ++     II+   KG   + 
Sbjct: 776 -----LMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIIT 830

Query: 644 VSSEEKMKLVVKVTGDH 660
           +   +++  V  ++ + 
Sbjct: 831 LKKGDEITAVSLISKNE 847


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 215/762 (28%), Positives = 402/762 (52%), Gaps = 37/762 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F
Sbjct: 3   MQQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R  L+   GN G++DGD AAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++++E +L+ +D+  VDF   +++ + EP V P++FPNLL NG +GI+ G AT IP
Sbjct: 123 EARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+ +A +  ID+P+ ++++L++++ GPDFPTG I ++  + + ++Y  G+G   V
Sbjct: 183 THNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAI-IQGIDELEQAYETGKGKVVV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E +  G   IVVTEIPY+V K+ L++KI E+ + K+I  + ++RDES      +
Sbjct: 242 RSKTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + + ++  +   ++++  +  NM  +   R  QV  L  IL  ++AH++EV+
Sbjct: 302 VIELKKEANAEGILNYLLKNTELQINYNFNMVAIDARRPMQV-GLKKILDSYIAHQKEVI 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +R+ F +     R+ I+ GL+ A   +DE+IA+IRN +     K  +V  +  T  Q +
Sbjct: 361 TKRTQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVETYDFTMTQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   ++ E  +L      + S+L S K     +  E+RE+K+ ++  
Sbjct: 421 AIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILKSEKTLLQVMKQELRELKKKYATP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R T  +    +     + +I +E + VV + +G+ + +   S   SA      +
Sbjct: 481 ------RLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKRVSPRSFASSAPEENGLR 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           EGD + +     T D ++L ++ G    LP   +     +  G  +   I L  N+ I+ 
Sbjct: 535 EGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAKWKDVGHHLSQSISLATNEIILA 594

Query: 605 AFVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKG-----KTFLKVSSE-EKMK 651
             V +           ++  + +G       +E   NT +G        +K+ +  +++ 
Sbjct: 595 GMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEF--NTYRGYKTRTSNAIKLKTATDEVV 652

Query: 652 LVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICE 707
            +  V      + +V      L + + ++P +     GV+  +  KD  ++  + +    
Sbjct: 653 AIELVPNQEQEIFIVTHCGFGLRYELSEVPVVGTVASGVKAINLRKDDFVAGAMVYSPES 712

Query: 708 G-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             ++   +  R   +  N L   +  R   G +V +   ++ 
Sbjct: 713 KVVSAFLATQRGSVKRFNVLEVSMLTRAKRGLMVLREL-KNN 753


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/765 (27%), Positives = 400/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I   + E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMLNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 218/752 (28%), Positives = 395/752 (52%), Gaps = 29/752 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KSA
Sbjct: 7   IQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKGFRKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG VIG  HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR+
Sbjct: 67  KTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++++  +++ +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IPSHN+
Sbjct: 127 SKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPSHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A + LID+P+ S+  L++Y+ GPDFPTG I ++  + I ++Y  G+G   VR++ 
Sbjct: 187 GEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAI-LQGVDGIKKAYETGKGKIIVRSKT 245

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EEV  G   IV+ EIPY+V K+ L+ K+ E+ + KR+  + ++RDES  +   ++   
Sbjct: 246 RIEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQIVVEL 305

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  +   ++  +   +D++  +  NM  +   + P+ + +  +L+ +L H++EV+ RR+
Sbjct: 306 KKEANAGGILNYLLKNTDLQVAYNFNMVAI-DKKRPKQVGIVRMLQAYLDHKQEVITRRT 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
           ++ ++  + R  I+ GL+ A   +D++I  IR+       K  ++ RF  TE Q +AI++
Sbjct: 365 NYNLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIERFDFTEIQAEAIVS 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   +++E D L  +    + +L S ++    +  E+ EVK+ ++      
Sbjct: 425 LQLYRLTNTDITALENEADALNKDIMAYNKILGSSQELNKVMKKELIEVKKKYASP---- 480

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDS 550
             R T  E    +     + +I  E + V ++  G+I+     S   S    +  KEGD 
Sbjct: 481 --RLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYIKRTSLRSYSASKPTEIGIKEGDY 538

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                  +T + +L+ ++ G     P   +  L  +  G+ +   I    ++ +V  F  
Sbjct: 539 PIYIQQLNTLNHLLIFTSKGNIIYRPIHEISDLRWKDMGDHLSQNIAFETDETVVKVFGL 598

Query: 609 D---STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE---EKMKLVVKVT---G 658
           +          ++ +G       SE  I    K K+F  +  +   +++  +V       
Sbjct: 599 EKQLPPATFTFITKEGYIKQTAVSEYVIGRNYKNKSFSAIKLKTTTDELLNIVYTEKPLS 658

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKICEGLTWIDSA 715
             V +V      L + +D++P +  +  GV+  + KDG   ++ V+          +   
Sbjct: 659 KDVFLVTNRGFGLRYPLDEVPTVGAKAAGVKSINLKDGDYVVNGVLVDTTASKAELMILT 718

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R   +  N L      R   G L+ +   ++
Sbjct: 719 QRGSVKKMNILDFEPLGRAKRGLLLLRELKKN 750


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 208/705 (29%), Positives = 338/705 (47%), Gaps = 66/705 (9%)

Query: 104  PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
                 + L  G     ++DGD  AA RYTE RMT++A+ +L  +D++ VDF   Y+  + 
Sbjct: 615  DHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTEH 674

Query: 164  EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
            EP V P++FPNLL NG+SGIAVGMAT+IP HN++E+ +A LA+IDNP +S+++L+E + G
Sbjct: 675  EPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVPG 734

Query: 224  PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRL 282
            PDFPT G+I   R  I E+YR GRG   +RAR   E   R G   IV+TEIPYQV K+RL
Sbjct: 735  PDFPTAGLINGVR-GIREAYRTGRGRCVMRARATTETQKRSGREAIVITEIPYQVNKARL 793

Query: 283  IEKIAELIIAKRIPLL--EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
            +E+IAEL+  K+I  +  + +RDES +D   ++    R    ++L+ +++  + ++  F 
Sbjct: 794  LERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFG 853

Query: 341  LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            +NM  L  G+ P  + L  IL+ +L HRR+V+ RR+ + ++    R  +L+G  IA  NI
Sbjct: 854  INMVALVDGQ-PLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANI 912

Query: 401  DEIIAIIR---NEDKPKPVMVSRFS----------------------------------L 423
            DE+IA I+   N  + +  ++ R                                    L
Sbjct: 913  DEVIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRL 972

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            +E Q  AIL+L+L  L  LE+ +I  E + +LA    +  +L+   +    I  E+  V+
Sbjct: 973  SERQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVR 1032

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
            + F        RRT   E+         + +I  E   V +S++G++++         K 
Sbjct: 1033 DQFGDE-----RRT---EIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQKR 1084

Query: 536  HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLL 593
                 SA   KE D +     A++ D +L  S+ G+ Y L    L  +GRG  G  +  L
Sbjct: 1085 GGKGKSATAIKEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNL 1144

Query: 594  IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            + L   + I T      Y+    + + +S G        +      +G   + +  +E +
Sbjct: 1145 LPLEAGERITTLLPVRDYEDGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDELL 1204

Query: 651  KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEG 708
                   G+  + +     K + FS   +  M R   GVR    ++G    +      +G
Sbjct: 1205 VGATITGGEQDLMLFTSAGKAVRFSESHVRSMGRAAHGVRGVMLQEGQ-RVIALVAPEDG 1263

Query: 709  LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             T +      Y +  +        RG  G +      R+G  + +
Sbjct: 1264 GTVLSVTENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGA 1308



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/112 (51%), Positives = 82/112 (73%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  ++L   + + YL YA+S I  RA+PD+RDG KPVHRR++ +M E G  +  A++K
Sbjct: 6   KEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNRAYRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           SAR+VG+V+GK HPHGD ++YD++VR+AQPF  R  L+ GQGNFG   GD+A
Sbjct: 66  SARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGDTA 117



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
            E        L     E      + ++ G ++              + A+  +E + L  A
Sbjct: 1148 EAGERITTLLPVRDYEDGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDELLVGA 1207

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                    ++L ++ GKA      ++ S       ++ ++ L   Q ++     +    +
Sbjct: 1208 TITGGEQDLMLFTSAGKAVRFSESHVRSMGRAAHGVRGVM-LQEGQRVIALVAPEDGGTV 1266

Query: 615  LVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRKL 670
            L V+  G     +  +     R  +  + +     +  ++  ++   GD + ++ ++  L
Sbjct: 1267 LSVTENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGAILVHPGDEIMLIADDGTL 1326

Query: 671  LIFSIDQIPEMSR-GKGVRLQSYKDG 695
            +  S+DQIP + R  KGV+L +  +G
Sbjct: 1327 IRTSVDQIPVVGRNTKGVKLINLGEG 1352


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/596 (37%), Positives = 356/596 (59%), Gaps = 22/596 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 305 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIR 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 364 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 424 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 482

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT     +    +   + +I +E + + ++ RG+I+          +     +  
Sbjct: 483 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
           +   E D ++  +   T D +L  +  GK Y      +        G  I  L+ +
Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGI 592



 Score = 44.4 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 615 LVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKLL 671
           + ++ +G    +  S   +  R  +G   +    ++ ++ LV   T D +       K+ 
Sbjct: 508 ITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567

Query: 672 IFSIDQIPEMSR-GKGVRLQSY 692
                ++PE  R  KG+ + + 
Sbjct: 568 RSKGYEVPEYGRTAKGIPIINL 589


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 206/744 (27%), Positives = 400/744 (53%), Gaps = 23/744 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN++++ L   + +R+  Y+   I++RAIPD+RDG KPV RRI+ AM   G  +   +
Sbjct: 1   MNENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VR++Q +  R+ L+   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++++A ++L+ ++++ VDF   +++   EP+V P+ +PNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A L +ID P IS +++++ + GPDFPTGGII+  +  I ++Y  GRG  +V
Sbjct: 181 PHNLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIM-GKSGIKQAYETGRGKIQV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R +  +E++  G   I+++EIP++V KS L+++I EL   K++  + ++RDE+  +   +
Sbjct: 240 RGKVDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + ++  ++  +D++  +  NM  +S    P+++ +  +L  +++H++EV+
Sbjct: 300 AIELKKDANSEGILNFLYKNTDLQIAYNFNMVAISDR-RPKLLGVRDMLNSFISHQKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429
            RRS +     ++R+ I++GL+ A   +D++I +IRN       K  ++ +F+ TE Q +
Sbjct: 359 TRRSQYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHKFNFTEAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   +++E + L    +++  +LN        I  E++ +++ F   
Sbjct: 419 AIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILNDETHLKKVIKKELKAIQKEFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E   A+    ++ ++  E   + I+  G+I+     S + S    +  K
Sbjct: 477 ----EERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKRTSPRSFNASGVTDIGMK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D L     ++     L+ +  G+   +P   L     +  G  I  ++ ++ ++ ++ 
Sbjct: 533 EDDQLLAYHESNLQHITLVFTDKGRYMYIPNHQLPEIRWKDLGTHISQIVPIDSDERVIH 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-D 659
                 ++S  K+L  +  G   +    +       +    +K+   + +  +  VTG +
Sbjct: 593 MITVTDFNSEVKILAATRNGMIKLSSLKDFEVTRYSRPLINMKLKGNDVVNTIHVVTGSE 652

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           H+ VV +    L +S+ ++ +   +  GV+  + KD  +  +    I    + + +  R 
Sbjct: 653 HILVVTKQGMSLHYSLTELNDTGLKAAGVKSINLKDDDVV-ITTEIIYPESSLLIATQRG 711

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
             +  +  L    KR   G ++ K
Sbjct: 712 AMKKMDIQLFEEAKRAQRGLMILK 735


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/765 (27%), Positives = 399/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 216/758 (28%), Positives = 397/758 (52%), Gaps = 28/758 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 1   MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 300 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D +  +IR+       K  ++     TE Q +
Sbjct: 359 ANRTKFELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAKENLIEVVEFTEEQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A + L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 419 ATVMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHDALLNVIKEELNEIKKKFK-- 476

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +  E    +     + M   E + + ++  G+I+     S + S    +  K
Sbjct: 477 ----SERLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLK 532

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GDSL      +T D +L+ +  G+   +P   L   R    G+ +  ++ +  ++ ++ 
Sbjct: 533 DGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVIN 592

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSEEKMKLVVKVTGD 659
            F    +++    +  +  G         +   TR  K  +  KV   + +  V++   D
Sbjct: 593 VFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKENDDLISVMRFEKD 651

Query: 660 HVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            +  V+      L ++  ++ +   R  GV+  + K      V+   + E  T + +  R
Sbjct: 652 QLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGVSENDTILMATQR 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
              +  +  +  + KR   G  + K   ++   + +++
Sbjct: 711 GSLKRISFKILQVAKRAQRGITLLKEL-KNNPHRIVAA 747


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/761 (29%), Positives = 383/761 (50%), Gaps = 36/761 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L   +   Y+ YA+S I  RA+PD+RDG KPVHRRI+ AM+E+GL+    F+K 
Sbjct: 58  KIITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAMNELGLNPDTPFRKC 117

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R  LISG GNFG+ID D  AA RYTE +
Sbjct: 118 ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSIDHDPPAAMRYTECK 177

Query: 136 MTQVAELI-LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++ I L+ + +   D+ + ++    EP V PS  P +L NG+SGIAVGMAT+IP H
Sbjct: 178 ISKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGSSGIAVGMATNIPPH 237

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI  A   LI+ P++S +KLL+ I  PDFPTGG  +   +   + Y+ G+G   VR 
Sbjct: 238 NLTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGG-SILGLQGCSKLYKNGQGSIIVRG 296

Query: 255 RWCVEEV----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +   E +          I++TE+P+Q+ K+ LI KIAEL+  K +  + D+RDES  +  
Sbjct: 297 KTHFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDGIVDLRDESDRNGI 356

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  + ++++ ++F  + ++T F  ++  L   +   +  L  +L  ++  R++
Sbjct: 357 RIVIELKKDTNKEVILNNLFKKTPLQTSFGGHILALVGQQPATLS-LKELLLLFIQFRKK 415

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--DKPKPVMVSRFSLTENQV 428
            + RR  F +     +  ++KGL++   +I+ I+ ++R    +    +++    LT+NQ 
Sbjct: 416 TIRRRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKIILMESGLTQNQS 475

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           DAILN++LR L +LE  ++ +E + L    + +   L   ++    I  ++ E+  +F  
Sbjct: 476 DAILNIQLRRLTRLESNKLNNEYEILNNTIKNLKKPLALPEELSKNIKKDLFEISILF-- 533

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLS 541
               G  R T    S    +  +  MI+     V+++     R            +    
Sbjct: 534 ----GMPRRTNVVHSETSGSIDEMEMIDNHATIVMVTKFFIKRMVVETFEPQTRGTRGKK 589

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LIDLNH 598
            +  +E D +      +  D IL +S +G A+   A  +   R   + + L   L ++  
Sbjct: 590 GVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFRAYQIPISRRTAKGVALSAVLPNITT 649

Query: 599 NQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            +   I+   V+ S   L++++  G             T +G T LKV  E+++  V K 
Sbjct: 650 GKISSIIPVSVFSSEKYLILLTKNGMIKKTPLIAFKNITARGLTVLKVGEEDELCWVRKC 709

Query: 657 T-GDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKIC----E 707
           +  D + +  +N K L F  +  Q+    R  KGV+  +  K+  I D+          +
Sbjct: 710 SLEDSILISTKNGKALRFLTNEKQLRATGRNSKGVKSITIEKNDTIIDMDVLSTSKTKHQ 769

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
               +      + +  N     +  RGG G  V K   +  
Sbjct: 770 DCYILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDN 810



 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 21/216 (9%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTD 561
           + +  ++   E   ++++  G I+     +        L+ L   E D L         D
Sbjct: 654 SIIPVSVFSSEKYLILLTKNGMIKKTPLIAFKNITARGLTVLKVGEEDELCWVRKCSLED 713

Query: 562 RILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCK 613
            IL+ + +GKA  +      L +   + + ++  I +  N  I+   V          C 
Sbjct: 714 SILISTKNGKALRFLTNEKQLRATGRNSKGVKS-ITIEKNDTIIDMDVLSTSKTKHQDCY 772

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGK--TFLKV--SSEEKMKLVV-KVTGDHVAVVGENR 668
           +L ++  G    +  S+     R GK  T +K+     +++  +   V    + +  +N 
Sbjct: 773 ILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDNDELLSLRFCVKEQEILMSTKNG 832

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +L   I+ I    +  +GV +Q   +G     +  
Sbjct: 833 TILRQKIEAITIQKKNARGVIVQKLMEGDYVSKVSL 868


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 208/753 (27%), Positives = 391/753 (51%), Gaps = 28/753 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I  A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRAAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G  +   +  +  +  
Sbjct: 649 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDIVVGGVVLREGDAK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             + +  R   +           R   G L+ +
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLR 741



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           + +S  + A+  K+ D L        T+ I L + +G     P   +         ++  
Sbjct: 629 QRYSKSMMAIKLKDDDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKA- 687

Query: 594 IDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----E 647
           I+L     +V   V        +L+ + +G+   ++ SE    +R  +  L +       
Sbjct: 688 INLKQGDIVVGGVVLREGDAKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNP 747

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683
            +   +      D + +   + +++   +  +    R
Sbjct: 748 HRFIDITLADNNDRLLIETNSEQVVEIEVANLRVTDR 784


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/765 (27%), Positives = 399/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEGKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 215/750 (28%), Positives = 372/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P+  +  L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVFNAILYLLKHPQADLADLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++AHRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQITYNFNMVAIADMQ-PKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            + +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D      K  D 
Sbjct: 477 DDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLKPNDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD--- 659
           D        ++ SS G       S++       RK    +K+ +   +      T D   
Sbjct: 597 DQLDLAGTFVLGSSDGYIKQTALSDLQPQRTYKRKPMMAMKLKTPGAVVTNAYFTTDQAQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +D++  +  R  GV+    K +  + + I  K  E         R
Sbjct: 657 DVFVVSRHAYGLDFPLDEVSTVGARATGVKSMDLKPEDEVVNFILVKQPEKAVVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKRMALSEVGQMSRARRGLLVLRELKRD 746


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 184/654 (28%), Positives = 307/654 (46%), Gaps = 36/654 (5%)

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
                   TE ++  +A  +L+ +DED VD +D Y+    EP + PS+ PNLL NG+ GIA
Sbjct: 555  DGFVSHNTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIA 614

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIV 240
            VGMAT IP HN++EI  A    +++PE     ++E LLE + GPDFPT G+IV  +  I 
Sbjct: 615  VGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQAGIQ 673

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            ++YR GRG  R+RA   VEE  RG   +VV+E+PYQV    L E+IAELI   ++  + D
Sbjct: 674  DAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIAD 733

Query: 301  IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            IRDES+      ++    R     +++ +++  + ++  F  NM  L  G VP+ + L  
Sbjct: 734  IRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQ 792

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
             ++ ++ H+ EV+ RR++FR++  + R  IL+GL  A   +DE+IA+IR     +  +  
Sbjct: 793  FIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQG 852

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            ++    + E Q  AIL+++LR L  LE  +I  +L  L  E   +  +L   ++Q   ++
Sbjct: 853  LIRLLDIDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVS 912

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529
             E+ E+   +        RRT        D     + +I +E + V I+  G+       
Sbjct: 913  EELGEIVAKWGD-----DRRTKIV---PFDGEVSMEDLIAREDVVVTITRTGYAKRTKVD 964

Query: 530  -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GH 586
              RS +     +S    ++ D +       T D IL  +  G+ Y   A  L        
Sbjct: 965  LYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAK 1024

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
            G+ +  L+    ++ I       +      L++ +  G        E  +N   G   + 
Sbjct: 1025 GQHVANLLAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAIN 1084

Query: 644  VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISD 699
            +  E+++   V V   D + +V +N + + F+     +  M R   GV    +  G    
Sbjct: 1085 LRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSGVIGMRF-SGEDEL 1143

Query: 700  VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            +    + EGL  + +    Y +        +  RGG G L  K   R G  + +
Sbjct: 1144 LAVEVVREGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGA 1197



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/119 (48%), Positives = 83/119 (69%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + ++ V L   ++  YL YA+S I  RA+PD+RDG KPVHR+I++AM + G      + 
Sbjct: 24  HDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYV 83

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+  RYPL+ G GNFG+   D AAA RY 
Sbjct: 84  KCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYC 142



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        ++    +  P  V+ +  G ++  +    D +      A++ ++ D L  A
Sbjct: 1035 QPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGA 1094

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN--HNQDIVTAFVYDSTC 612
            +     D +LL+S + +A    A +  + R  G A   +I +      +++   V     
Sbjct: 1095 VLVAPEDDLLLVSKNAQAIRFNATD-EALRPMGRATSGVIGMRFSGEDELLAVEVVREGL 1153

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENR 668
             +LV ++ G A      E     R GK  L     E+    +  VV    D +  +  N 
Sbjct: 1154 DVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNG 1213

Query: 669  KLLIFSIDQIPEMS-RGK-GVRLQSYKDGGISDVICFKICE 707
             ++   +  +     R   GV+L    DG     I     E
Sbjct: 1214 GVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTIVAIARNADE 1254


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 218/733 (29%), Positives = 394/733 (53%), Gaps = 26/733 (3%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R  +EE+  G 
Sbjct: 181 MIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSRTEIEELKGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +     +  D   +
Sbjct: 240 QQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  RS F     ++
Sbjct: 300 LNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEK 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ I++GL+     +DEIIA+IR+ D     K  +   +  +E Q +AI+ L+L  L   
Sbjct: 359 RLHIVEGLIRVLSILDEIIALIRSSDNKADAKENLKVSYDFSEEQAEAIVTLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           +   +++E ++L      + +++      +N +  E+REVK+ F+        R +  + 
Sbjct: 419 DIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKKFANP------RLSELQA 472

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGDSLKIALHAHT 559
                     ++I +E   V ++  G+++     S + S+L     ++ D L     A T
Sbjct: 473 ESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDDELIFVKQAKT 532

Query: 560 TDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA--FVYDSTCKL 614
           T+ +LL +T G     P   L     +  GE + Q + +    ++I+ A           
Sbjct: 533 TEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLY 592

Query: 615 LVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENRKL 670
           + V+  G     +  E+    T K K+  ++K+  + +++  +  V  + + +V +N   
Sbjct: 593 VAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYA 652

Query: 671 LIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
           L FS  ++P    +  GV+  + K+   S    F +     ++ +   S  R   D +  
Sbjct: 653 LRFSSQEVPIQGLKSAGVKGINLKNDD-SLASAFAVTSNSFFVLTQRGSLKRMAVDDIP- 710

Query: 730 LGKRGGVGSLVPK 742
              R   G LV +
Sbjct: 711 QTSRANRGLLVLR 723


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 226/753 (30%), Positives = 401/753 (53%), Gaps = 29/753 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 6   NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++++  +L+ ++++ V+    +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN
Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +  + LID+P+ S+++L++YI GPDFPTGGI ++ +E I ++Y  G+G   +R++
Sbjct: 186 LGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGI-LQGKEEIKKAYETGKGKVILRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+ EIPY+V K+ L++K+ E+ + KRI  + ++RDE+      ++  
Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +   ++  +F  ++++  +  NM  +   R  QV  L  IL+ ++ HRREV+ +R
Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQV-GLKRILESYIKHRREVIEKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAIL 432
           S F +Q   +R  I+ GL+ A   +DE+IA IR     K    +   +   TE Q +AI+
Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVIQHGFTEEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           NL+L  L   +  Q+++E   L     ++ ++LN   +    I  E+RE+K+ ++     
Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGD 549
              R T  E    +     Q ++ +E + V ++  G+++     S   S    +  KEGD
Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTAF 606
           SL  +   +T D +LL++  G     P   L     +  GE I Q ++ L  ++ I+  F
Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597

Query: 607 VY---DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTGD 659
            Y   D     +++S  G       +E     T K +  T +K+  E +++  V      
Sbjct: 598 AYKEIDPLKNFVLISKNGMIKQTRMTEFEPWRTYKTRPMTIMKLKDETDELVNVFLTDQT 657

Query: 660 ---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDS 714
               V +V      L +S++++P +  +  GV+  + K             EG T  +  
Sbjct: 658 EEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLINGLLVYSEGDTPIVLI 717

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
             R   +           R   G +V +   ++
Sbjct: 718 TQRGAAKRMLAQEITQLGRAKRGLMVLRELKKN 750


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 220/743 (29%), Positives = 398/743 (53%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P+ S+EKL+E++ GPDFPTGGI ++  + I ++Y  G+G   VR+R
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+VTEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  +   +D++  +  NM  +     P+ + L  IL  +++HR++++  R
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAI-DHFTPRQVGLQKILSSYISHRKDIIIER 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S F     ++R+ I++GL+     +DEIIA+IR  D     K  +   +  +E Q +AI+
Sbjct: 361 SKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENLKVSYDFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E ++L      + ++++     +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDIITLQNEENDLRELITTLSAIVSDEATMYNVMKRELREVKKKFANP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  +           ++I +E   V ++  G+++     S + S+L     ++ D
Sbjct: 478 ---RLSELQAESQTIEIDIASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTA- 605
            L     A TT+ +LL +T G     P   L     +  GE + Q + +   +++I+ A 
Sbjct: 535 DLIFVKQAKTTEHLLLFTTLGNVIYRPIYELTDLRWKDIGEHLSQTISNFATDEEILYAD 594

Query: 606 -FVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
                     L V+  G     E  E+    T K K+  ++K+   ++++  +  +  + 
Sbjct: 595 IVTSFDQGLYLAVTQNGFTKRFERQELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVMED 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +V      L FS   +P    +  GV+  + K+     V  F +     ++ +   + 
Sbjct: 655 LLLVTYYGYALRFSSQDVPIQGLKSSGVKGTNLKNED-KLVSAFSVTSNSFFVLTQRGAL 713

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            R   D +     R   G LV +
Sbjct: 714 KRMAVDDIP-QTSRANRGLLVLR 735


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 209/765 (27%), Positives = 393/765 (51%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +         R T  +   A+     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTP------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ + +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GKELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +      +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSVIDIPAFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K D  +   I     +  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYPITEIPESGARTAGVKAINLKQDDKVVGGIVLSSNDPK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 242/820 (29%), Positives = 390/820 (47%), Gaps = 105/820 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   IL  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNM 185

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+  A LA  DN  IS+E L+EYI GPDFPTGGI +  +  IV++YR G+G   +R ++
Sbjct: 186 TEVVNACLAYADNTNISVEGLMEYISGPDFPTGGI-IYGKSGIVDAYRTGKGRLHIRGKY 244

Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             EE  + G   IV TEIPYQV K+R+IE+IAEL+  K++  + ++RDES +D   +   
Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + ++++ ++F+ + +E  F +NM  L  G+ P++M L  I+  ++ HR+EV+ RR
Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM------------------ 417
           + + ++    R  IL+GL +A  NID+II  I+    P                      
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423

Query: 418 ------------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                      + L+  QV AIL LRL  L  LE+ ++ +E   
Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +L +  ++ ++LN        I  E+  V + +  +     RRT   E         ++ 
Sbjct: 484 ILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDA-----RRTEIVESR---IDFSRED 535

Query: 514 MIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +I +E + + +S  G+ ++         +      SA   KE D ++  +       +L 
Sbjct: 536 LIPEEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLC 595

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL---VVSSK 620
            +  GK Y L    +   S    G  +  L+ L+ N+ I          K     + + K
Sbjct: 596 FTNVGKVYRLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFK 655

Query: 621 GNAFIVEE--------------------------SEIIANTRKGKTFLKV-----SSEEK 649
                                              E+ A  R     L V       +++
Sbjct: 656 NFVKTNTVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDE 715

Query: 650 MKLVVKVTGD------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703
           + +      +      +V +   +  +    ++Q   + R  G+R     +      +  
Sbjct: 716 IIIEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNV-RSNGLRAIELNEEDTLIGVTI 774

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              E    + S          +       R   G    + 
Sbjct: 775 TDGEQQIMLFSNE-GKAIRFAETDVRAMGRSAKGVRGMRV 813



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 597 NHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           + + +I+  F   +        + + ++ G    VE  +       G   ++++ E+ + 
Sbjct: 711 DLDDEIIIEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLI 770

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD---------- 699
            V    G+  + +     K + F+   +  M R  KGVR         ++          
Sbjct: 771 GVTITDGEQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSE 830

Query: 700 -------------VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
                        V    + E    + ++   Y +          KRGG G +  K   R
Sbjct: 831 DEDSSDSNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSER 890

Query: 747 SGKFLSS 753
           +G+ + +
Sbjct: 891 NGELVGA 897



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 91/279 (32%), Gaps = 40/279 (14%)

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           ++++ L       ++++ E+R   +       +                ++++       
Sbjct: 677 ELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFAQQAESVRKNYY---- 732

Query: 520 ITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
              + +  G ++ +         S  L A+   E D+L          +I+L S +GKA 
Sbjct: 733 -VFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAI 791

Query: 574 TLPAGNLLSGRGHGEAIQLL-IDLNHNQ----------------------DIVTAFVYDS 610
                ++ +     + ++ + + L                           IV+  V   
Sbjct: 792 RFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPE 851

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVGE 666
           T ++L  S+ G        +     R GK  + +     + E +  V       + ++ +
Sbjct: 852 TGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDETKELMLISD 911

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICF 703
              L+     ++ +  R  +GVRL    +G  +  V+  
Sbjct: 912 GGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSI 950


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/765 (27%), Positives = 398/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/765 (27%), Positives = 399/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +   A+     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/765 (27%), Positives = 398/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
 gi|332311732|gb|EGJ24827.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes str. Scott A]
          Length = 819

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/765 (27%), Positives = 398/765 (52%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +A     +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLN 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L +SI +IPE   R  GV+  + K D  +   I     E  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQK 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 752


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/753 (28%), Positives = 384/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
              G  R +      A     ++A+I +E + V+IS  G+I+     S   +        
Sbjct: 479 ---GSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+    +  G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVT-- 657
            F      D     L+ ++ G    V  +++    T K +  + +  + +   V+ V   
Sbjct: 596 VFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLA 655

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  + +       L + ID++P++  R  GV+  + K+            +    +
Sbjct: 656 KTSEKREIILFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLL 715

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 716 KVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLR 748


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/753 (28%), Positives = 385/753 (51%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L ++    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEKILADPKVLQKEIIKELRAVKKEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
              G  R +      A     ++A+I +E + V+IS  G+I+     S   +        
Sbjct: 479 ---GSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+    +  G+ +   + L  ++ I+ 
Sbjct: 536 ETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVS---SEEKMKLVVKV 656
            F      D     L+ ++ G    V  +++    T K +  + +     + ++  V  V
Sbjct: 596 VFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLV 655

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  + +       L + ID++P++  R  GV+  + K+            +    +
Sbjct: 656 KTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLL 715

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 716 KVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLR 748


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P+  +  L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVVNAILYLLKHPQADLADLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL + K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++AHRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQITYNFNMVAIADMQ-PKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            + +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPASRDRVIEKELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D      K  D 
Sbjct: 477 DDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPEDNGLKPNDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD--- 659
           D        ++ SS G       S++       RK    +K+ +   +      T D   
Sbjct: 597 DQLDLAGTFVLGSSDGYIKQTALSDLQPQRTYKRKPMMAMKLKTPGAVVTNAYFTTDQAQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F + ++  +  R  GV+    K +  + + I  K  E         R
Sbjct: 657 DVFVVSRHAYGLDFPLAEVSTVGARATGVKSMDLKPEDEVVNFILVKQPEKAVVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKRMALSEVGQMSRARRGLLVLRELKRD 746


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P   ++ L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D +    K  D 
Sbjct: 477 DDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKANDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGSDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV--TGD--- 659
           D        ++ SS G       S++    T K K  + +  ++   +V     T D   
Sbjct: 597 DQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTTDQQQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +  +  +  R  GV+    K D  + + I  K            R
Sbjct: 657 DVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKKMALSEVGEMSRARRGLLVLRELKRD 746


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P   ++ L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D +    K  D 
Sbjct: 477 DDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKANDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV--TGD--- 659
           D        ++ SS G       S++    T K K  + +  ++   +V     T D   
Sbjct: 597 DQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTTDQQQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +  +  +  R  GV+    K D  + + I  K            R
Sbjct: 657 DVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKKMALSEVGEMSRARRGLLVLRELKRD 746


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P   ++ L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D +    K  D 
Sbjct: 477 DDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKANDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV--TGD--- 659
           D        ++ SS G       S++    T K K  + +  ++   +V     T D   
Sbjct: 597 DQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTTDQQQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +  +  +  R  GV+    K D  + + I  K            R
Sbjct: 657 DVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKKMALSEVGEMSRARRGLLVLRELKRD 746


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/744 (29%), Positives = 375/744 (50%), Gaps = 23/744 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             +++  +SL   + +R+  Y+   I++RA+PD RDG KPV RRI++AM   G      +
Sbjct: 3   TIQHILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVY+++VRL+Q +  RYPLI   GN G++DGD AAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A ++L  + ++ VD+   +++   EP+V PS  PNLL NGT+GI+ G AT IP
Sbjct: 123 EARLSKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+   A+A +       +  LEY+ GPDFPTGG ++  ++ I++++  G+G   +
Sbjct: 183 PHNLTEVLNLAIARLKGQVDIAKDALEYVTGPDFPTGGTVM-GKDGILKAFETGKGKVII 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E++  G   I +TE+PY+V K+ L++K+ EL + K++  + ++RDE+      V
Sbjct: 242 RAKSEIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRV 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + ++      +D++  +  NM  +     P+ M +  I+  +L H  EV+
Sbjct: 302 VIELKKEADAEGVLHFFLKHTDLQLAYNYNMVSIVNR-TPKQMGIIPIIDAYLKHVEEVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVD 429
            RR++F ++   +R EI+  L  A   +DE + +IR+           + RFS TE Q +
Sbjct: 361 TRRTTFELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMERFSFTERQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           A++ L+L  L   +  +++ E   L  E  ++ ++L+    +   I  E+  +++ F   
Sbjct: 421 AVVMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDVDATKRKLIVKELTALRDEF--- 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
              G  R +  E    +     + MI  E   V +S  G+++     S   S+      K
Sbjct: 478 ---GDDRRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRASMRSYGASSDVLPEMK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D   +   A TTD +L+ +  G    +P   +     +  G+ +  L+ +   Q I  
Sbjct: 535 EKDRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKWKDAGQHVANLVPIEGEQVISA 594

Query: 605 AFV--YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-DH 660
             V  +D+    L V+  G        +  A  + K    LK+  ++++       G   
Sbjct: 595 DVVSTFDTDAHCLFVTKDGMVKRTPLRDYDAQRKSKPLMALKLKGDDEVVFAGISDGPGQ 654

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRS 718
           + +V E    L F  D +P +  R  GV+  + KDG  ++D   F        +   G  
Sbjct: 655 LFLVSERGYGLWFKEDDVPVVGQRAAGVKAMNLKDGDLVADAFSFFTPPLFVLVTQRGAV 714

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
                 D       R   G+++ +
Sbjct: 715 KKMKLEDQFD-CTNRNLRGTMLIR 737


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P   ++ L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPAARDRVIEGELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D +    K  D 
Sbjct: 477 DDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKANDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV--TGD--- 659
           D        ++ SS G       S++    T K K  + +  ++   +V     T D   
Sbjct: 597 DQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTTDQQQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +  +  +  R  GV+    K D  + + I  K            R
Sbjct: 657 DVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKKMALSEVGEMSRARRGLLVLRELKRD 746


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 207/765 (27%), Positives = 391/765 (51%), Gaps = 31/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS   ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +         R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTP------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ + +LL ++ G     P   L   R    G+ +  L  DL
Sbjct: 529 GKELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
           +  ++I +      +    + L V+  G       +        K    +K+  ++++  
Sbjct: 589 SAGEEIRSVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELLS 648

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K D  +   +     +  
Sbjct: 649 VHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQDDTVIGGVVLTPNDNR 708

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 709 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 752


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/798 (31%), Positives = 391/798 (48%), Gaps = 66/798 (8%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  + L     + YL+YA+S I  RA+PD+RDG KPVHRRI++AM E+GLD    FK
Sbjct: 106 DERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 165

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VGEV+GK HPHGDQSVYD+LVR+AQ F     L+ G GNFG++D D  AA RYTE
Sbjct: 166 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYTE 225

Query: 134 ARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+   AE ++L  +  DAVDF +T++   +EP V P++ PNLL NG++GIAVGMATSIP
Sbjct: 226 CRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIP 285

Query: 193 SHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN++E+  A +    +P   ++E LLE +  PDFPTGGIIV+ R    E YR G+GG  
Sbjct: 286 PHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVN 345

Query: 252 VRARWCVEEVGRG------SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           +R    VE+V  G         +V+T IPYQ  K+ L E+IA+L+ ++ I  + D+RDES
Sbjct: 346 LRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDES 405

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  D + +++ ++  + ++TR  +N+  L  GR P+V+ L  I++E+L
Sbjct: 406 DRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLV-GREPKVLSLMEIMREFL 464

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR-F 421
           A R + + RR+   +Q    R+ +++G L      D ++A IR        +  +  + F
Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPF 524

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q +A+L + LR L  LE  ++K+E   L A  E +  LL    +    +A E +E
Sbjct: 525 WLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAKE 584

Query: 482 VKEIFSKSTDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           +++ F        RRT    +     K       +   P  V+++NRG+I+         
Sbjct: 585 LRDTFGV-----DRRTDIDTDAQIHAKKMNVTLDMLNSPSLVIMTNRGYIKRIDPAVFSK 639

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
               +   +    + GD +    H +  D +L  +  G+ + + A N+   S    G   
Sbjct: 640 QNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPF 699

Query: 591 QLLIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             ++ L   + I      D+T +        L  V+++G       SE +     GK  L
Sbjct: 700 TRVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKKAL 759

Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRK-LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
            +   +++K V  V      ++G     ++ F  D +    R   GV+  ++K  G+ D 
Sbjct: 760 VLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFDADSVRAQGRAAAGVKAMAFKPDGLDDT 819

Query: 701 ICFKI--------------------------CEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
                                           +G      +     +  +        R 
Sbjct: 820 SEDDDTSEALPANASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQFAQQSRA 879

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G     G  +  K  +
Sbjct: 880 GRGKKGM-GLMKGSKLAA 896



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGE 666
           L  VSS G    +  ++    +R  +GK  + +    K+  +          +HV +  +
Sbjct: 856 LFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVIIGSQ 915

Query: 667 NRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICE 707
              +  + +  I     R  KGV +    DG     I     E
Sbjct: 916 GGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLLPAE 958


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/826 (28%), Positives = 382/826 (46%), Gaps = 100/826 (12%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK  S    +E+ YL+Y +ST+  RA+PD+RDG KPVHRRI+ +M+E          KSA
Sbjct: 18  VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           ++VG+V+G+ HPHGD ++YD++VR+ Q +  RYPLI  QGNFG+ID D  AA RYTE+R+
Sbjct: 78  KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  + E  VDFR  Y+    EPVV P++FPNLL NG  GIAVGMAT+IP H++
Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E  EA L  + NP +++++++  + GPD PTGG ++  R  I +++  GRG  RV    
Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGG-VIHGRSGIRQAFATGRGAIRVSGVA 256

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315
            VEE   G   IV+ ++PY V K+  +EK+AEL+  K+I  + DIRDES++     ++  
Sbjct: 257 SVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVID 316

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  DP +++  +   +D  T   +NM  L     P+ M +  +L E++  RREV+ RR
Sbjct: 317 VRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRR 376

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV---------------- 416
           +  R++     +    GL  A L IDEI+A+IR+    D+ +                  
Sbjct: 377 TMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQLL 436

Query: 417 --------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                   +   F L++ QV AIL +RL  L  LE  +I      L  E      +LN  
Sbjct: 437 FEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILNVK 496

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +  E+ E+K  F         R T  E S  D A   + ++E + I V ++  G
Sbjct: 497 AVLDGVVRRELEEIKAAFPDG------RRTAIEDSALD-ALSDEDLVELKDIVVTVTAGG 549

Query: 529 WIRS--LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +++   L ++     A      D +   +   T   +L  +  G A+   A  L     +
Sbjct: 550 YVKRTDLPAYMGRQKAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPN 609

Query: 587 --GEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKG 638
             G A+   ++L   + +                 L+ V+  G     + S+     + G
Sbjct: 610 VRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGG 669

Query: 639 KTFLKVSSEE-----KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRL 689
           K  +K+  E      K+  V+ V+  D VA+   +     F++  +  M + +   GV  
Sbjct: 670 KVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVM-KSRDSVGVAG 728

Query: 690 QSY--KDGGI-----------------------------------------SDVICFKIC 706
            S   KD  I                                           ++  +  
Sbjct: 729 ISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSDRMLAMQEA 788

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           E L  +      + +  +     +  RGG G    K   R+G  ++
Sbjct: 789 EQL-ILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVA 833



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 25/223 (11%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK-SHSVDLSALHFKEGD 549
             E        +   ++  E    + S  G         +R +K   SV ++ +     D
Sbjct: 676 EDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGISLGRKD 735

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +                T+ +AY             GE     +  +            
Sbjct: 736 KVISVSVLR---HFEATGTEREAYLAGGSARTKDETTGEPATFELPSDR------MLAMQ 786

Query: 610 STCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVG 665
              +L++ V+  G A            R G+        ++   +  ++ V    V V+ 
Sbjct: 787 EAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADRTGDLVALMPVEEQDVLVIT 846

Query: 666 EN-RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            +  K    S  ++P M+RG  G R  +  +G  + V   KI 
Sbjct: 847 TDAGKTFRTSAAEVPIMARGTQGTRAFAL-EGRQAIVSVVKIA 888


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 223/769 (28%), Positives = 392/769 (50%), Gaps = 50/769 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E + ++++   ++  Y+ Y++S I  RA+PD+RDG KPVHRR+++ M E G      +K
Sbjct: 4   NEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHYK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTE
Sbjct: 64  KSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P 
Sbjct: 124 IKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA  + IDN  I+IE+L++YI  PDFPTGGI +   E + E++  GRG   +R
Sbjct: 184 HNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGI-IYGYEGVKEAFLTGRGKILLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++   E++ +   CI++ EIPYQ++K+  I K  EL+   R+  L  IRDES  +   ++
Sbjct: 243 SKVHFEKI-KFRTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F   ++++  LL+ ++F  + +ET F +N   L  G+  + + L  ++K ++ HR  V+ 
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTK-LNLKYLIKHFVNHRHNVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + +     R  I++G  +   +++ +I +I++       K  +++++ L+E QV +
Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYKLSEIQVQS 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+L SL KLE  +IK E   L  +      +LN    Q   I  E++ +KE +    
Sbjct: 421 ILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRILNDKFLQKKIIKKELKIIKEKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------- 541
               RRT        D   L+ ++   + + +  S  G+++    +   +          
Sbjct: 479 ---SRRTEI------DYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIKKIGVGGIVN 529

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
             A   K+ D +K  + A+T   +L  +  GK + L    +  G     G AIQ LI ++
Sbjct: 530 MGAYKLKK-DFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEGYKTSKGRAIQNLIKID 588

Query: 598 HNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
               I ++ +        Y +   +++++  G        +     + G   +K+   + 
Sbjct: 589 KKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSKPNKNGINAIKIKKGDA 648

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS----YKDGGISDVICF 703
           +       G   + +  ++ K + F    +  M+R   GV+  +         +  +IC 
Sbjct: 649 LIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMTRITLGVKSITLSKLLSKDKVIGMICI 708

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    +  +   + +  N                     ++G  ++
Sbjct: 709 NDPKKEYILVISENGFVKISNLSHYRKTD-----LKTINITSKTGCLVA 752



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/474 (14%), Positives = 160/474 (33%), Gaps = 45/474 (9%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAE 307
           ++  ++ ++        +++    Y + K++    I E   L++     ++E I+     
Sbjct: 341 KLNLKYLIKHFVNHRHNVIIRRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDR 400

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLA 366
           +   +       L    +   + +  +  T+           ++ + +     IL +   
Sbjct: 401 ENAKIKLLNKYKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRILNDKFL 460

Query: 367 HRREVLFRRSSFRMQAID-RRVEILK-GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
            ++ +       + +  D RR EI   GL  +     +++     +   K   ++ + + 
Sbjct: 461 QKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEPNKQVVLTTSYDGYMKRTDLNEYKIK 520

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           +  V  I+N+    L+K     I      ++A   +         + +     EI E   
Sbjct: 521 KIGVGGIVNMGAYKLKKDFIKHI------IVANTHQYMLFFTEKGKCFWLRVFEIPE--- 571

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-------KEPITVVISNRGWIRSLKSHS 537
                T  GR      ++ + DK      + +            ++I+  G I+      
Sbjct: 572 --GYKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQ 629

Query: 538 V------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEA 589
                   ++A+  K+GD+L  A   +    IL+    GKA       +        G  
Sbjct: 630 YSKPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMTRITLGVK 689

Query: 590 IQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
              L  L     ++     +      +LV+S  G   I   S      +     + ++S+
Sbjct: 690 SITLSKLLSKDKVIGMICINDPKKEYILVISENGFVKISNLSHY---RKTDLKTINITSK 746

Query: 648 EKMKLVVK--VTGDHVAVVGENRKLLIFSIDQ----IPEMS--RGKGVRLQSYK 693
               + +K  V  D + ++ ++   L   + +    +      +GKG++L + K
Sbjct: 747 TGCLVAIKNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKGNKGKGIKLINLK 800


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/753 (28%), Positives = 384/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADSKVLQKEIIKELRAVKKEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
              G  R +      A     ++A+I +E + V+IS  G+I+     S   +        
Sbjct: 479 ---GSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+    +  G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVT-- 657
            F      D     L+ ++ G    V  +++    T K +  + +  + +   V+ V   
Sbjct: 596 VFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLA 655

Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  + +       L + ID++P++  R  GV+  + K+            +    +
Sbjct: 656 KTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLL 715

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 716 KVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLR 748


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/765 (27%), Positives = 390/765 (50%), Gaps = 32/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL +  G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKL 652
           +  ++I +    D      + L V+  G       +      R  K+ + +   E+++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNY-KPQRYSKSMMAIKLKEDELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 751


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/753 (28%), Positives = 383/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E++ VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELQAVKKEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
              G  R +      A     ++A+I +E + V+IS  G+I+     S   +        
Sbjct: 479 ---GSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+    +  G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVS---SEEKMKLVVKV 656
            F      D     L+ ++ G    V  +++    T K +  + +     + ++  V  V
Sbjct: 596 VFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLV 655

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  + +       L + I ++P++  R  GV+  + K+            +    +
Sbjct: 656 KTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLL 715

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 716 KVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLR 748


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/753 (28%), Positives = 384/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 4   THERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKPF 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYT
Sbjct: 64  KKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYT 123

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++L+ +D++ V     +++   EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 124 ESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L+ ++ GPDFPTGGI++  ++ + ++Y+ G+G  +V
Sbjct: 184 PHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVM-GKKGLRDAYKTGKGRIQV 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE+      IVVTEIPY V K++L++KI E+ +++ +  + ++RDE+      +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVV 361

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T+ Q +
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTDRQAE 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   +++E + L  +    + +L   K    +I  E+R VK+ F   
Sbjct: 422 AIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILADPKVLQKEIIKELRAVKKEF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
              G  R +     +A     ++A+I +E + V+IS  G+I+     S   +        
Sbjct: 479 ---GSDRRSEISDEKARVEVDEKALITEESVRVLISRDGYIKRSSMRSFQSTEAGDNGLP 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           E D +       T   + L +  G     P   L+    +  G+ +   + L  ++ I+ 
Sbjct: 536 ETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHLSQELGLAADESIIR 595

Query: 605 AFVY----DSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVS---SEEKMKLVVKV 656
            F      D     L+ ++ G    V  +++    T K +  + +     + ++  V  V
Sbjct: 596 VFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMKMKGEDSRVITVDLV 655

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
                  + +       L + I ++P++  R  GV+  + K+            +    +
Sbjct: 656 KTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYVVACLVTDPQYEDLL 715

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 716 KVGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLR 748


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/743 (29%), Positives = 389/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG I ++  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  ++  +D++  +  NM  +      QV  L  IL  ++AHRRE++  R
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQV-GLQKILSSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L     +  GE + Q L++ + N++I+ A 
Sbjct: 535 QLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEKMKLVVKVTGDH 660
           + +         V+  G    VE  E        ++  K      +E+ +  V  V  D 
Sbjct: 595 LVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLTDAEDVVITVSPVVLDD 654

Query: 661 VAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ E    L F+I+++P   ++  G +  + KD  +           +  +    R  
Sbjct: 655 IMLMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDEDVVAAAFISNTSSVYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMATEEIPVTSRAKRGLQVLR 735


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/750 (28%), Positives = 371/750 (49%), Gaps = 27/750 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KSA
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           + VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++DGD  AA RYTEAR+
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++++ +L  +D++ VD    +++   EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+  A L L+ +P   ++ L++Y+ GPDFPTGGI ++  + I ++Y  GRG   VR+R 
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGI-IQGLDGIKQAYETGRGKIVVRSRT 243

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E +  G   IVVTEIPY V K+++I+KI EL I K++  + ++RDES      V+   
Sbjct: 244 HIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIEL 303

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D   ++  +F  +D++  +  NM  ++  + P+++ L  +L+ ++ HRR+V+ RR+
Sbjct: 304 KKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQ-PKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILN 433
            F +     R  I++GL+     +D++IA IR        K  +V +F  +E Q +AI++
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKKFDFSEAQAEAIVS 422

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   ++ E   L     +   +L     +   I  E++ + + +      G
Sbjct: 423 LQLYRLTNTDITALQKEAAQLAKAIAEYQDVLARPAARDRVIEGELKRIAKEY------G 476

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDS 550
             R +  +             +  E + V +S  G+++     S    D +    K  D 
Sbjct: 477 DDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSLRSYQAVDPADNGLKANDL 536

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVY 608
                   T   + +++  G     P   +   R    GE +   + L  ++ ++  F +
Sbjct: 537 AIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKDTGEHLSQTVGLGTDEKVLAVFAF 596

Query: 609 DS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV--TGD--- 659
           D        ++ SS G       S++    T K K  + +  ++   +V     T D   
Sbjct: 597 DQLDGAGSFVLGSSDGYIKQTALSDLQPQRTYKSKPMMAMKLKDPAAIVTNAYFTTDQQQ 656

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGR 717
            V VV  +   L F +  +  +  R  GV+    K D  + + I  K            R
Sbjct: 657 DVFVVSRHAYGLTFPLSDVSTVGARATGVKSMDLKPDDEVVNFILVKDPTTAKVGILTQR 716

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G LV +   R 
Sbjct: 717 GAFKKMALSEVGEMSRARRGLLVLRELKRD 746


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/765 (27%), Positives = 391/765 (51%), Gaps = 32/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D +LL +  G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKL 652
           +  ++I +    D      + L V+  G       +      R  K+ + +   E+++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNY-KPQRYSKSMMAIKLKEDELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +  +N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 751


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 220/743 (29%), Positives = 392/743 (52%), Gaps = 26/743 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L  +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + +ID+P   +EKL+E++ GPDFPTG I ++  + I ++Y  G+G   VR+R
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAI-IQGADEIKKAYETGKGRVVVRSR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY+V K+ L++KI ++ +  ++P + ++RDES      +   
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D   ++  ++  +D++  +  NM  +      QV  L  IL  ++AHRRE++  R
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQV-GLQKILSSYIAHRREIIIAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  +E Q +AI+
Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKISYEFSEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   +++E   L  + + + +++   +  +N +  E+REVK+ F      
Sbjct: 421 TLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQF------ 474

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
           G  R +  +           ++I +E   V ++  G+I+     S + S    +  ++ D
Sbjct: 475 GNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L    +A TT  +LL +  G     P   L     +  GE + Q L++ + N++I+ A 
Sbjct: 535 QLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAE 594

Query: 607 VYD--STCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTGDH 660
           + +         V+  G    VE  E     T K K+  + K+   E+ +  V  V  D 
Sbjct: 595 LVENFEEGTYFAVTKYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVLDD 654

Query: 661 VAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + ++ E    L F+I+++P   ++  G +  + KD  +           +  +    R  
Sbjct: 655 IMLMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDEDVVAAAFISNTSSVYLLTQ--RGS 712

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   G  V +
Sbjct: 713 LKRMATEEIPVTSRAKRGLQVLR 735


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 278/757 (36%), Positives = 412/757 (54%), Gaps = 29/757 (3%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS- 62
           D  S ++  +       SL+     RYL YALS I  RA+PD+RDG KPV RRI++AM  
Sbjct: 15  DAPSGTDDYMGGGELDASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQA 74

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +  L   A  KKSA++VG VIG+ HPHGD +VYD++VR+AQPF  R PL+ G GNFG++D
Sbjct: 75  DEKLSHEAKHKKSAKVVGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLD 134

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDS AAYRYTEAR+T  A  +L  +    V FR  Y+    EP V P++FPNLL NG++G
Sbjct: 135 GDSPAAYRYTEARLTAAAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTG 194

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN++E+ +A +AL D+PE+++  LL+YI GPDFPTGG I+ S+  + E 
Sbjct: 195 IAVGMATNIPPHNLRELTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREI 254

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  GRG  RVR  + +E   R    +VVT +PY V K+ ++E+IAE+II +++P L D+R
Sbjct: 255 YEEGRGAIRVRGEYKLETQKRSK-ILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVR 313

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLD 358
           DES  DVR+VL  K    DP+++M  +F  + ++  F +N+  L    +    P  + L 
Sbjct: 314 DESTTDVRVVLEIKK-DADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLK 372

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415
            +L+ +L  R EV  RR  F + A+ RR+ IL+G ++ +  +DE I IIR  D       
Sbjct: 373 DMLRHFLDFRYEVTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQ 432

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ +F L + QVDAIL LRL  L KLE   I+ EL +  ++ + I+++L S K+ W  +
Sbjct: 433 KIMKKFGLDKEQVDAILELRLYRLAKLEINIIREELADKRSQAKSIEAILRSEKKLWGVV 492

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ EV E+   +      R T    + A+      A I  E   VV++  GW++    
Sbjct: 493 KTELGEVAELLGDA------RRTKTGGAAAELEFDADAYIIDEDAHVVLTRDGWLKRQ-R 545

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
              D ++   +EGD +   L   T + +   +  G AY +   ++ +  G+G+ +Q L  
Sbjct: 546 ELKDPTSTRLREGDEVMAVLAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFK 605

Query: 596 LNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKM 650
               + IV A  +D       +LL VSS G              TR G+ F +    +++
Sbjct: 606 FKDGERIVAAMAFDPRAMPPDELLTVSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEI 665

Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC-- 706
             VV    D + VV       L     +I ++ + GKGV +   K G    VI F     
Sbjct: 666 VDVVATEEDDIVVVATRKGYTLACRSGEINKLENPGKGVTVI--KTGEHDKVIGFISGGR 723

Query: 707 -EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                +++SA        + +   L  RGG G  + K
Sbjct: 724 RAEALYVESAKGGRTFELHAVAQRLTTRGGKGHQLVK 760



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAV 663
           A++ D    +++ +  G      E +   +TR       +   +++  V+   T +HVA 
Sbjct: 524 AYIIDEDAHVVL-TRDGWLKRQRELKDPTSTR-------LREGDEVMAVLAGSTKEHVAF 575

Query: 664 VGENRKLLIFSIDQIPEMSRGKG--V-RLQSYKDG-GISDVICFKI----CEGLTWIDSA 715
                   +  I  +P  S G G  V +L  +KDG  I   + F       + L  + S 
Sbjct: 576 FTNYGSAYVIKIYDVPATS-GYGDPVQKLFKFKDGERIVAAMAFDPRAMPPDELLTVSSG 634

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           G     +         + G   +  PKG  
Sbjct: 635 GFGQRFASEPFTQPTTRAGRKFARPPKGDE 664


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 182/648 (28%), Positives = 312/648 (48%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN++E+ EA    +DN E   E     + E + GPDFPT G+IV S + I ++Y  G
Sbjct: 610  IPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGS-QGIHDAYTTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S+
Sbjct: 669  RGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSS 728

Query: 307  ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +     ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 729  DRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 788  AHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+
Sbjct: 848  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIVHDELSEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             +          RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 908  VDKHGDE-----RRTRII---AADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V  + D  + +V  N + + FS     +  M R   GV+   +       +    +
Sbjct: 1080 LVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYL-LSLNVV 1138

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 1139 REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1186



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 82/132 (62%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY   
Sbjct: 122 NDPPAAMRYCVT 133



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 82/215 (38%), Gaps = 14/215 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +   + + +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCSSDEDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDYLLSLNVVREGT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V       ++   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             ++  +  Q+ +  R  KGVRL +  +      I 
Sbjct: 1203 GVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAIA 1237



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 530  IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 1111 LRPMGRATSGVQGMRFNADDYLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 1170

Query: 590  IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
            +  ++       +V A + D   +L  ++S G        ++    R  KG   + +  E
Sbjct: 1171 VLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEE 1230

Query: 648  EKMKLVVK 655
              +  + +
Sbjct: 1231 NTLLAIAR 1238


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 209/765 (27%), Positives = 390/765 (50%), Gaps = 32/765 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E +++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE   L  +   ++ +L    +    +  E+ ++
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISILEKILGDEAELVAVLKSELADI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DL 596
              L  KE D        ++ D ++L +  G     P   L   R    G+ +  L  DL
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPDIRWKNLGDHVSHLASDL 588

Query: 597 NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKL 652
           +  ++I +    D      + L V+  G       +      R  K+ + +   E+++  
Sbjct: 589 SAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSTITNY-KPQRYSKSMMAIKLKEDELLN 647

Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGL 709
           V  + G + + +   N   L + I +IPE   R  GV+  + K G +    +     +  
Sbjct: 648 VYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTPNDNK 707

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
             + +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 708 HILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 751


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/754 (30%), Positives = 393/754 (52%), Gaps = 27/754 (3%)

Query: 6   ISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +   + + E +   + A  L   +  R+ +Y+   I++RA+PD RDG KPV RRI++AM 
Sbjct: 1   MKKKDDIFEHDNSTIIATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           E G  +  A++KSA+ VG VIG  HPHGD SVYD++VR++Q +  R+P I  QGN G+ID
Sbjct: 61  EDGNLWDKAYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTEAR+ +++E +L+ +++D V +   +++   EP V P+ +PNLL NG +G
Sbjct: 121 DDPAAAMRYTEARLGKISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IA G AT+IP HN+ E  +A +  I NP+ S+E+L+EY+ GPDFPTG I V+  + I ++
Sbjct: 181 IAAGYATNIPPHNLNEAIQATIYRIRNPKCSLEELMEYMHGPDFPTGAI-VQGIDGIKDA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +R G+G   +R++  +E+  +    I+V EIPY+V KS +++KI E+ + K+I  + D+R
Sbjct: 240 FRTGKGRIMIRSKVSIEQT-KTIQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVR 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    +  D  L++  ++  +D++  +  N+  +   R  Q M L  +L 
Sbjct: 299 DESDRNGLRVVIDIKKDADAQLILNYLYKNTDLQVSYNYNVVAIVNKRPVQ-MGLVAMLD 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS 419
            ++AHR EV+ +RS + +   ++R  IL+GL+ A   +DEIIA+IR+       K  ++ 
Sbjct: 358 AFIAHRVEVIEKRSRYDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIE 417

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            FS +E Q +AI+ +RL  L   +   ++ E + L  E   +  +L+  K     +  E+
Sbjct: 418 AFSFSEEQAEAIVTMRLYRLSSTDITLLQEESEQLQKEIAHLHCILDDPKVLRKVMIQEL 477

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + V   F         R T  E +  +    + AMI +E +   +S  G+ + +   S +
Sbjct: 478 KAVNTAFPTP------RLTKIEETIEEIVIDKLAMINEEQVMFTLSRDGYAKRVSLRSYN 531

Query: 540 LSA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594
            S+      KEGD L       T D+IL  +  G    +P   L     +  G  +   I
Sbjct: 532 ASSDSLCGLKEGDRLIGCGEVSTLDKILFFTNMGTYGYVPVYELEEAKWKDVGTHLNAGI 591

Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKM 650
            +   + I  AFV   + S   ++ V+  G       SE  ++   K  + +K+   +++
Sbjct: 592 RMRGEEKITDAFVVKSFQSQAYVVSVTRMGLIKKSALSEYEVSRNNKTMSNMKLLDGDEV 651

Query: 651 K-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
               +   GD + +  E    + + +D +P  S R KGV+     D  I D  C    + 
Sbjct: 652 IRSFIAYDGDEIFIASETGFAVRYPLDMVPLTSPRSKGVKAMKLVDDVIGDA-CIYHQDN 710

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              +  +     +        +  R   G+++ K
Sbjct: 711 KQLVVFSKNGAVKRMKLSEIEITGRPAKGNMLCK 744


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 179/649 (27%), Positives = 310/649 (47%), Gaps = 38/649 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 549  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 608

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN++E+ +A    +DN +   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 609  IPPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAGLIVGS-QGIADAYKTG 667

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-S 305
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S
Sbjct: 668  RGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGS 727

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 728  ERVGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYV 786

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 787  EHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 846

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+
Sbjct: 847  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRGIVRDELGEI 906

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             +          RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 907  VDKHGD-----DRRTRIV---AADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 958

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D +       T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 959  RGGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1018

Query: 593  LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1019 LLAFQPEERIAQVIQIRGYEDAPYLVLATKNGLVKKSKLTDFDSNRSGGIVAINLRDNDE 1078

Query: 650  MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V  +  D + +V  N + + FS     +  M R   GV+   +       ++   +
Sbjct: 1079 LVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNAD--DRLLSLNV 1136

Query: 706  C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              EG   + +    Y +        +  RGG G L      R G+ + +
Sbjct: 1137 VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1185



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 6   ISNSNTLVE---ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           ++++    +   E ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 1   MTDTTLPPDNSAERIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 61  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 120

Query: 123 GDSAAAYRYTEA 134
            D  AA RY   
Sbjct: 121 NDPPAAMRYCVT 132



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 16/236 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1023 QPEERIAQVIQIRGYEDAPYLVLATKNGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1082

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +     D +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1083 VLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREGT 1141

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V       ++   +    D     +    
Sbjct: 1142 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIADDDSELYAITSGG 1201

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA--GRSYNR 721
             ++  +  Q+ +  R  KGVRL +  +G     I     E    I     G    +
Sbjct: 1202 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESEEAIGETDDGNGSGK 1257


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/744 (31%), Positives = 398/744 (53%), Gaps = 30/744 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    L   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM   G  +  A++KS
Sbjct: 14  NVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTWDKAYRKS 73

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA RYTEAR
Sbjct: 74  AKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAAMRYTEAR 133

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +++E +LQ +D+D V +   +++   EP V P+++PNLL NG +GIA G AT+IP HN
Sbjct: 134 LGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHN 193

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E  +A++  I +P+ +++ L+E++ GPDFPTGGI V+  + I +++  G+G   VR++
Sbjct: 194 LGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGGI-VQGLDGIKDAFTSGKGRIMVRSK 252

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +    I+V EIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+  
Sbjct: 253 VSIEQT-KTVQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRNGLRVVID 311

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D  L++  ++  +D++  +  N+  +   + P  M L  +L  ++AHRREV+ RR
Sbjct: 312 LKKDADAQLILNYLYKNTDLQVSYNYNVIAI-KDKRPVQMGLAAMLDAFIAHRREVILRR 370

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           S+F +   ++R  IL+GL+ A   +DEIIA+IR+       K  ++  F  +E Q +AI+
Sbjct: 371 SAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIEAFGFSEPQAEAIV 430

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL  L   +  Q++ E  NL AE +++  +L   K+    +  E++EVK+ F      
Sbjct: 431 TMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAELKEVKKAFPTP--- 487

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  E    +    + AMI +E +   IS  G+++ +   S   +       KEGD
Sbjct: 488 ---RLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDAMTGIKEGD 544

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
            L      +T D IL  ++ G    +P   +   +    G  I   I +  ++ I  AF+
Sbjct: 545 HLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFI 604

Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLV-VKVTGDHVA 662
              + +   ++ ++  G        E  ++   K  + +K+  ++++    V    D + 
Sbjct: 605 VKDFKTNSYMISITRHGLVKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEIL 664

Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS---AGRS 718
           +  +   +  + I  IP  S R KGV+  +  +  I+  + +        + S   A + 
Sbjct: 665 IASKKGYITRYPISLIPATSPRSKGVKAMNLVEDEIASALIYNNDNRQLVVFSDDCACKR 724

Query: 719 YNRSENDLLGWLGKRGGVGSLVPK 742
              ++ D    +  R   GS++ K
Sbjct: 725 MKLTDID----VTGRPTKGSMLCK 744


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 226/763 (29%), Positives = 377/763 (49%), Gaps = 40/763 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +  + EN+  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+ +M E+GL  
Sbjct: 10  PDEDIVENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMDELGLTP 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KS+R+VGEV+GK HPHGD ++YD+LVR+AQ F  R PLI G GNFG++D   AA+
Sbjct: 70  NKNHVKSSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLDQGPAAS 129

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   +  ++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAVGMA
Sbjct: 130 -RYTEARLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASGIAVGMA 188

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+ +AA+ LI NP+ S++ L+ ++ GPD P GG  +   + I ++Y  GRG
Sbjct: 189 TNMAPHNLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGG-RIIGLDGIRDAYLTGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            FR RA   +E V      IVVTE+PY V   ++I+K+ +L+  K++  + D++D S   
Sbjct: 248 TFRTRATATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKDLSDRH 307

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L+ +   
Sbjct: 308 HGLRLVIELKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PRTLGLKELLRVYTDF 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RR++ R+   + R+ ++ GLLIA L+IDE+I IIR+ D     +  ++  F L+
Sbjct: 367 RIDVVRRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQVFDLS 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+L+LR L K    +++ E D L AE EK+ ++L   K     +  E+  V +
Sbjct: 427 EAQATYILDLQLRRLTKFSRLELEKEADELRAEIEKLRAILADVKLLHKVVCDELLAVAK 486

Query: 485 IFSKSTDLGRRRTTFCE------VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
            F        RRT   E      V++    +     I  +P  V++S+ G I    S  +
Sbjct: 487 EFGTP-----RRTVLLEGNGTQAVAKTASKSSMPLEIPDDPCWVLLSSTGLIARTTSADL 541

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAI 590
             +    ++ D +  A          ++++ G+ + + A  L              G  +
Sbjct: 542 LSTDGGRRKHDVVLAAARTSARGEFGVVTSAGRLFRVSALELPHLVDTHAAPVLDGGAPV 601

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
              +DL   + ++T     +    L + ++ G    V         +     + +  ++ 
Sbjct: 602 AAFVDLAPGEKVLTVTSLRADSPGLALGTAAGVVKRVTTEY---ANKPIMEVITLKGDDV 658

Query: 650 MKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706
           +   V  +   + +  V    +LL F+   +    R G GV       G  +        
Sbjct: 659 VVGAVELQTGTEELTFVTNEAQLLHFNAANVRPQGRTGGGVAGIKLGAGARAIFFGSVSR 718

Query: 707 EGLTWIDSA------GRSYNRSENDLLGWLGK-RGGVGSLVPK 742
           +G+    +       G   +        +  K R   G    +
Sbjct: 719 DGIVVTGAGHPGSPNGEITSLKVAPFTEFPAKGRATAGVRAHR 761


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/766 (31%), Positives = 392/766 (51%), Gaps = 39/766 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             S     + E +  V +   +   +L YA S I +RA+PD RDG KPV RRI++ MSEM
Sbjct: 7   TTSPPPEELTEKIIDVDVSEEMRGSFLEYAYSVIYQRALPDARDGLKPVQRRILYQMSEM 66

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       K AR+VGEV+GKLHPHGD ++YD+LVRL+QPF  R PL+ G GNFG++ GD
Sbjct: 67  GLRPDRGHVKCARVVGEVMGKLHPHGDSAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGD 126

Query: 125 SA-AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            A AA RYTEAR+T+ A L+++ +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGI
Sbjct: 127 DAPAAMRYTEARLTRAAMLMVESIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  AA  L+ +P+ ++E+L+E+I GPD PTGG  +   + I ++Y
Sbjct: 187 AVGMATNMAPHNLGEVIAAARHLLAHPDATLEELMEFIPGPDLPTGG-TITGLDGIRDAY 245

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG FR+RA   +E++      +VVTE+PY V   ++I +I EL+ AK++  + D++D
Sbjct: 246 TKGRGTFRIRATVSIEKLTPRRTGLVVTELPYNVGPEKVISRIKELVQAKKLQGISDLKD 305

Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            +  +    ++       +P+ ++E ++ L+ ME  F +N   L  G  P+ + L  +L+
Sbjct: 306 LTDRNQGLRLVIELKNGFNPEAVLEELYRLTPMEETFGINNVALVDGE-PRTLGLRDLLQ 364

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++ HR EV+ RR   R    + R+ ++ GLL+A  +ID++IA+IR+ D     +  ++ 
Sbjct: 365 VYVDHRLEVVRRRCEHRRAKREERLHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLMD 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F L++ Q   IL+  LR L + ++ +++ E D L AE  ++ ++L S K+    ++ E+
Sbjct: 425 TFDLSDTQARYILDTPLRRLTRYDKQELEQERDTLTAEIAELTAILESDKKLRRLVSKEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             V + F+       RRT   E +   + +     +  +P  V++S  G I       + 
Sbjct: 485 AAVAKEFATP-----RRTVLRESTGEVRTSAMPLEVGDDPCHVLLSTSGLIGRTSGQQLP 539

Query: 540 L--SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---------GRGHGE 588
                   +  D++   + A     + L++  G+   +P   L               G 
Sbjct: 540 PMFEGPRTR-NDAMASNVRATVRGEVGLVTDLGRVIRVPVLELPELPDKADENPAISSGV 598

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +   ++L+ ++ ++     DS    LVV +  G    V         +     + +   
Sbjct: 599 PVTEFVELDADERVIALTSLDSDGPGLVVGTRSGIVKRVGGD--YPQQKDDFEIIALRPG 656

Query: 648 EKMKLVVK-VTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD-VICF 703
           +++      VTG + +  +  N +LL FS   +    RG  GV      +G  +      
Sbjct: 657 DRLVGATPLVTGEEDLVFITSNAQLLRFSATTVRPQGRGAGGVTGIRLAEGAHAVWFGAV 716

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
              E    +  AG S      D        G         FP  G+
Sbjct: 717 LSPEDAVVVTVAGSSTG---PDSQP-----GTAKVTPFTAFPAKGR 754


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/778 (32%), Positives = 405/778 (52%), Gaps = 44/778 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L   ++   +L   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 13  DLLQSGHIIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLSPD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F  RYPL++G GNFG+ID D  AA 
Sbjct: 73  RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSIDNDPPAAM 132

Query: 130 RYTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R++ V  E +L  + ED VDF D ++    EPVV P + P LL NG+SGIAVGMA
Sbjct: 133 RYTETRLSPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGSSGIAVGMA 192

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P HN+ E+ +  +ALID+PEI  EKL   I  PDFPTGG IV     + ++YR GRG
Sbjct: 193 TNMPPHNLGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIV-DLAGVRDAYRTGRG 251

Query: 249 GFRVRARWCVE------EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              +R    +E      +  R    +VVTE+PYQV K+  IEKIA+L+   +I  + DIR
Sbjct: 252 IIPMRGIVHLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKISGISDIR 311

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  +P+ +++ ++  + +++ F   +  L   + P+ + L  IL+
Sbjct: 312 DESDRQGMRVVIELKRDAEPEKVLKLLYKKTALQSNFGAILLSLVNNQ-PRQLSLKAILQ 370

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L  R E + R+  + ++  + R   ++GLL+A  N+D +I I+RN       K    +
Sbjct: 371 EFLEFREETVTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTAKQQFQA 430

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
               +E+Q DAIL + +R L  LE  +++ E   L  E  K++ LL+   +    +  E+
Sbjct: 431 ALGFSESQSDAILAMPMRRLTGLERQKLEQESTELATEIAKLNKLLSDRHELLKALKREL 490

Query: 480 REVKEIFSKS--TDLGRRRTTFCEVSRADKATLQQAMIE---------KEPITV---VIS 525
           R +K  F+    T L    +   E    +      A            +EP+      ++
Sbjct: 491 RSLKRKFADPRRTRLPDVPSPEPEPVTVEAEPDTPAATPKKKRQSRKKEEPVLALLPQLT 550

Query: 526 NRGWIRSLKSHSV--DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-- 581
               +    S  V          + +         T  ++++ +  GKA+ +   +L   
Sbjct: 551 ETSHVAIAASGGVYWGNDDAGLLDEEPTIFKAQIGTQKKLIVCTDQGKAFPVAIADLPYQ 610

Query: 582 SGRGHGEAIQLLID--LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTR 636
             R   + I LL D  L  +   +T F+         LL+++++G    +   E+ + T 
Sbjct: 611 EQRDKPQLIDLLPDHALRDDHQPITQFLLPDNLAEYDLLLLTAQGRIKRLPAIELESFTS 670

Query: 637 KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSY 692
           +G + +K+  ++ +K    V  G+ VA+   + ++L   ++  +IP M R  +G +    
Sbjct: 671 RGLSLIKLKDKDTLKFACFVKGGEQVAIAVSSGRVLHLPVNDHEIPVMGRTSQGNQALRL 730

Query: 693 K--DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +  +  ++ V C +  E L  I   G     + + L   LGKRG +G+ V +   ++ 
Sbjct: 731 RFNEQIVACVPCQRHNE-LYLISEEGYGKKLAASSL--RLGKRGDMGNHVMRFESKTD 785


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 219/747 (29%), Positives = 388/747 (51%), Gaps = 30/747 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LI +P  S++KL+E+I GPDFPTG  I++  + I ++Y+ GRG   VRA+
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTG-GIIQGIDGIRKAYQTGRGRVVVRAK 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +   
Sbjct: 244 TEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + + ++  +   +D++  +  NM  +   R  +V  L  IL  +L  ++E++ RR
Sbjct: 304 LKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRV-GLKRILTSYLEFQKEIIRRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F      
Sbjct: 423 TLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEF------ 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R T  E          +  +  E + V++S+ G+I+     S   S       +E D
Sbjct: 477 GNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGLREDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
              +    +T   + + +  G     P   +   R    GE I   I L  N++I+ A +
Sbjct: 537 YPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAMI 596

Query: 608 YDSTCK---LLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLV---VKVTG 658
           +D   +   +++ +S G       ++    +R        +K+    ++  V        
Sbjct: 597 FDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNE 656

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSA 715
           +  +  +      + + +  +P    R  GVR  + KD   ++D I  K  + +  I   
Sbjct: 657 NCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQILVKDGQNIAVITQR 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G       +++   +G R   G LV +
Sbjct: 717 GAFKAMPVDEIE--VGARARRGELVLR 741


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 219/747 (29%), Positives = 388/747 (51%), Gaps = 30/747 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LI +P  S++KL+E+I GPDFPTG  I++  + I ++Y+ GRG   VRA+
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTG-GIIQGIDGIRKAYQTGRGRVVVRAK 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +   
Sbjct: 244 TEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + + ++  +   +D++  +  NM  +   R  +V  L  IL  +L  ++E++ RR
Sbjct: 304 LKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRV-GLKRILTSYLEFQKEIIRRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  +++ E + L +   +   +L +  +    +  EIR +K+ F      
Sbjct: 423 TLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEF------ 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R T  E          +  +  E + V++S+ G+I+     S   S       +E D
Sbjct: 477 GNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGLREDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
              +    +T   + + +  G     P   +   R    GE I   I L  N++I+ A +
Sbjct: 537 YPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAMI 596

Query: 608 YDSTCK---LLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLV---VKVTG 658
           +D   +   +++ +S G       ++    +R        +K+    ++  V        
Sbjct: 597 FDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNE 656

Query: 659 D-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSA 715
           +  +  +      + + +  +P    R  GVR  + KD   ++D I  K  + +  I   
Sbjct: 657 NCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQILVKDGQDIAVITQR 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G       +++   +G R   G LV +
Sbjct: 717 GAFKEMPVDEIE--VGARARRGELVLR 741


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 236/781 (30%), Positives = 401/781 (51%), Gaps = 54/781 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 13  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 137 TQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +  + +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN
Sbjct: 133 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPE+S EKL + I GPDFPTGG I+++ + I ++YR G+G   VR  
Sbjct: 193 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQT-QGIEDAYRHGKGIIPVRGV 251

Query: 256 WCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +E +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES    
Sbjct: 252 VKIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTG 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R      ++  ++  + ++  F   M  L   + P+ + L  +L+E+L  R 
Sbjct: 312 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQ-PRQLSLRQLLEEFLKFRE 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
             L R+ ++ ++    R+ +L+GLLIA  ++D +I I+R+       K       +L+E 
Sbjct: 371 HTLTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQELNLSEA 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + IL + +R L  LE  ++++E D L     ++++LLN+  +    +  E+R +K  +
Sbjct: 431 QANGILAMPMRRLTGLERQKLQAEYDELAGRINELENLLNNRPEFLKVLKKELRSLKRKY 490

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS--------------------- 525
                  +RRT   + +    ++      +K+  +  ++                     
Sbjct: 491 GD-----QRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTTATSDKETEKTTRPFSLFTPQ 545

Query: 526 ---NRGWIRSLKSHSVDLSALHFKEGDSLKIALH--AHTTDRILLLSTDGKAYTLPAGNL 580
                  +      ++   +   K  D+            ++ ++++  GKAY +   ++
Sbjct: 546 TPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQEREQFIVITDIGKAYPVNVADV 605

Query: 581 LSGRGHGEAIQLLIDL---NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIAN 634
                    +  L+       ++ +V+ F    T     LL+++++G    V+ SE+   
Sbjct: 606 PPIDIQPIPLLSLLSKTAQRDSKKVVSLFFLSDTTDNKDLLLLTNQGKIKRVQLSELEGL 665

Query: 635 TRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS-IDQI-PEMSR-GKGVRLQ 690
           T +G   +K+  ++ ++ V     G+ VA+   + ++L F  +D++ P M R  +G +  
Sbjct: 666 TNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQAL 725

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             +  G + V C  + E    +  +   Y +  N     + K G +G+   +   +    
Sbjct: 726 KSR-YGETIVSCVTLDENKIVLLVSKLGYGKRLNITGLRMTKLGDIGTQALQFTNKQDSL 784

Query: 751 L 751
           L
Sbjct: 785 L 785


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/750 (30%), Positives = 392/750 (52%), Gaps = 26/750 (3%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                   +V +  L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM E G  
Sbjct: 5   EQQLEHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +   ++KSA+ VG VIG  HPHGD SVY+++VR++Q +  R P I  QGN G+ID D AA
Sbjct: 65  WDKGYRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+ +++E +L+ ++++ V +   +++   EP V P+++PNLL NG +GIA G 
Sbjct: 125 AMRYTEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGY 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +AA+  I + + S+E+L+EYI GPDFPTGGI V+  + I E++  G+
Sbjct: 185 ATNIPPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGGI-VQGLDGIREAFETGK 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR +  +E+  +    IV+TEIPY+V KS +++KI ++ + K+I  + D+RDES  
Sbjct: 244 GRIIVRGKAVIEQ-KKTVQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDR 302

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    +  + D+++  ++  +D++  +  N+  +   R  Q M L  +L  ++ H
Sbjct: 303 NGLRVVVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVDKRPVQ-MGLAQMLDAFIEH 361

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLT 424
           RREV+ RRS + ++  + R  IL+GL+ A   +DEIIA+IR        K  ++  F+ +
Sbjct: 362 RREVIERRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIMDAFAFS 421

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q +AI+ +RL  L   +  Q++ E   LL E E++  +L + +     +  E+ EVK+
Sbjct: 422 DAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDILENPRMLKKVMIRELHEVKK 481

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-- 542
            F         R T  E    +    + AMI  E +   IS  G+ + +   S +     
Sbjct: 482 AFKTP------RLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYFKRVSMRSYNAGKED 535

Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHN 599
               KEGD L      +T D +L  +T G     P   +   R    G  I   I ++  
Sbjct: 536 MTGLKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEESRWKEIGSHINSTIRISGE 595

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVK 655
           + I  AFV   + +   ++ V+  G        E  ++   K  + +K+   +++   + 
Sbjct: 596 EKITDAFVLRSFATNAYMISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLEGDEVITTMA 655

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWI 712
               D + +  +N  +  + +  IPE S R KGV+  +   D  +S  I       L   
Sbjct: 656 AYDYDEILIASKNGYVSRYPVSLIPETSPRSKGVKAMNLVMDELVSACIHHADASQLVVF 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               +      +D+   +  R   G+++ K
Sbjct: 716 TDQCQVKRIKLSDID--VTGRPARGAMICK 743


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 387/757 (51%), Gaps = 34/757 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++  +  I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVLGDK-GIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H   V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQV-GLKRILSSYLEHDEAVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+EI++GL+ A   +D++I  IR   N+   K  ++ +FS T  Q +AI
Sbjct: 364 RTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    + LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIANYNLLLTDRKVLEKQIIKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
            G  R T      A     ++A++ +E + V++S  G+++     S    D S     + 
Sbjct: 479 -GSDRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTDDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D +       T   + L +  G     P   L+  +    G+ +   + L+ ++ IV+ F
Sbjct: 538 DKVVFEKTMSTLTNLYLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIVSVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
                D     ++ ++ G    +  ++I    T K +  + +  ++    V+ V G    
Sbjct: 598 ELAKLDEKLNFVLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKQDTSRVIHVEGVVPD 657

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICE----GLT 710
               + +       + + I +IP    R  GV+  + KD   + D +           L 
Sbjct: 658 TKKEITLFTNQAYAVRYDISEIPTSGARAAGVKSVNLKDDDYVVDYVTVDPKYLNLMKLG 717

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            I   G ++   + +L+  +  R   G LV +   ++
Sbjct: 718 IITQRG-AFKEFKYELINKV-SRAKRGVLVLRELKKN 752


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 177/648 (27%), Positives = 310/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN++E+ +A    ++N E   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 611  IPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGS-QGIEDTYKTG 669

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
            RG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  + +I D+S 
Sbjct: 670  RGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSS 729

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 730  DRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 789  EHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVRDELKEI 908

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             + +        RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 909  ADKYGD-----DRRTRIV---PADGEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D +       T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1020

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+    N+ I        Y+    L++ +  G       ++  +N   G   + +   ++
Sbjct: 1021 LLAFQPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVAVNLRDGDE 1080

Query: 650  MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V   + D + +V    + + FS     +  M R   GV+   +        +    
Sbjct: 1081 LVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNADDELLSLNVVR 1140

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + ++G  Y +  +        RGG G L  +   R G  + +
Sbjct: 1141 PDTYLLVATSG-GYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGA 1187



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 81/132 (61%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY   
Sbjct: 122 NDPPAAMRYCVT 133



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 14/224 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            + +      +Q    E  P  V+ +  G ++  +    D +      A++ ++GD L  A
Sbjct: 1025 QPNERIAQVIQIKSYEDAPYLVLATRNGLVKKSRLTDFDSNRSGGIVAVNLRDGDELVGA 1084

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +   + D +LL+S  G++    A +  + R  G A   +  +  N + ++++  V     
Sbjct: 1085 VLCSSEDDLLLVSAKGQSIRFSATD-EALRPMGRATSGVQGMRFNADDELLSLNVVRPDT 1143

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
             LLV +S G A      E  A  R GK  L +  + +   +   + V  D  +  +    
Sbjct: 1144 YLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGG 1203

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             ++  +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1204 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/766 (31%), Positives = 389/766 (50%), Gaps = 41/766 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++  D  
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM   + L+ + +DE+ VDF   Y+  + EPV  P+ +PNLL NGTSGIAV
Sbjct: 128 PAAMRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG  +     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGG-RIVGMSGVRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR  V+ RRS FR      R+ +++GLL+A L+IDE+I +IR  D   + K  ++ RF
Sbjct: 366 LDHRFNVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQRF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L K +  +++SE D L  E E++  +L+S  +    ++ E+  
Sbjct: 426 GLSEVQTQYILDTPLRRLTKFDRLELESERDRLNTEIEELTRILDSDAELRKLVSGELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S     T     +  +P  V++S+ G + R+       +
Sbjct: 486 VAKKFGTP-----RRTVLLE-SSNAPVTAVPLEVADDPCRVLLSSTGLLARTADGEPFPV 539

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--------LSGRGHGEAIQ 591
                +   D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 EGKAKRAKHDVILSAVPATARGSVGAVTSTGRLLRLTVIDLPMLPESAGPPNLAGGAPIA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     D +   L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLSLEEGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAN-KDELEVIGLKEGDRI 657

Query: 651 KLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD-------GGI 697
              V  +   + +  + ++ +LL ++  Q+    R      GV+L S             
Sbjct: 658 VGAVELRTGEEDLVFITDDAQLLRYAASQVRPQGRAAGGMAGVKLASGAKVISFTAVDPA 717

Query: 698 SDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           SD + F I     T  DS  +S   +  D     G R   G    +
Sbjct: 718 SDAVVFTIAGSSGTLDDSVQQSAKLTPFDQYPRKG-RATGGVRCHR 762


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 223/745 (29%), Positives = 386/745 (51%), Gaps = 24/745 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+N+  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G      
Sbjct: 1   MTEKNII-MSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKP 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VRL+Q +  R PL+  QGN G+ID D AAA RY
Sbjct: 60  YRKSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+  +A  +++ +D++ V     +++ + EP VFP+K+PNLL NG +GI+ G AT I
Sbjct: 120 TEARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +A +  I +P  S ++L ++I GPDFPTG I VE    I  + R GRG   
Sbjct: 180 PPHNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGAI-VEGASDIATALRTGRGKVV 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+R+ + E  +    I++TEIPY+V K+ L+ K+AE+   + I  + ++RDES  +   
Sbjct: 239 VRSRYKIVEQ-KNINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLC 297

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     + +D    +   F  +D++  +  NM  +   + P +M ++ IL  ++ H  EV
Sbjct: 298 IAVDLKKDVDARNTLNYFFKNTDLQKNYNYNMTAI-KDKRPVLMGIEDILDGYIKHECEV 356

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + +RS F +     R  I++GL+ A   +DE++  IR        K  +++ F  TE Q 
Sbjct: 357 VTKRSIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLMNAFGFTERQA 416

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +   +++E   L A  E ++++L S K     I  E++ VK+ +  
Sbjct: 417 EAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILTSEKVLRKVIIDELKGVKKKYPT 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
                  R T  +    D +  QQAMI  E + V I+  G+ + + + S   S  +    
Sbjct: 477 P------RLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKKISTRSYKASDENTFGK 530

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
           K+ D L     A+T D IL  +  G    +P   L     +  G+ +  LI L +++ I+
Sbjct: 531 KDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFKWKDLGKHLSYLIKLGNDEKII 590

Query: 604 T---AFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                  +D    +++ S  G    V   +  ++   K    + +   +++  V    G 
Sbjct: 591 GNILVKSFDLDQYVVLSSKNGQIKRVSIKDFNVSRFSKPLKCMNLKDNDELISVDISDGT 650

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             +  V +     ++S D+I  +  +  GV+  + +D  ++ +  F      + +     
Sbjct: 651 KGIITVTKAGYGTLYSEDEISILGVKAGGVKGINMRDDEVAFMSVFDPSIASSLLLVLNP 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
           ++ +  +        R   G+L+ K
Sbjct: 711 AHFKRIHISDIPACHRATKGTLLFK 735


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 401/742 (54%), Gaps = 35/742 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    +   L++ Y+ YA+S I  RA+PD+RDG KPV RRII++MSE G  +   +KKS
Sbjct: 3   GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVYD+LVR+AQ FV RYPL+ G GNFG++DGD  AA RYTE R
Sbjct: 63  ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+++E ++Q +D+D V++   ++    EP V P+ FP LL NG+SGIAVG++T IP HN
Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A L  + NPE +  +L+ ++ GPDFPTGG I+  ++ +V+ Y  G+G  RVR R
Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQD-LVKVYEEGKGVIRVRGR 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE       +V+ EIPY V K+ L+ +IA+LI  +++  ++++RDES      V+  
Sbjct: 242 AKLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +      ++  ++  + +E  F +NM  L  G   Q + L   +  ++  R+E + RR
Sbjct: 302 LKKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQ-LTLRDYIASFVDFRKETILRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + +    +R E+++G+L A  NID +I IIRN    D+ K  ++S+  LTE Q +A+L
Sbjct: 361 TRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEVQAEAVL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++LRSL  +E+ +++ EL++LL    +   +LNS  +    IA E++ VK++F+     
Sbjct: 421 EIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLFAD---- 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             +R T    S     T+Q A   +E   + +   G IR  K+ +            +L 
Sbjct: 477 --QRRTLIGFSDQQTETVQAA---EETFFIELLEYGIIRRSKTQT------------NLV 519

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             +    +D ++ L+  GK + + A  +   +  G A+  L  + +++ ++   +     
Sbjct: 520 DFIEVQGSDPVMFLTNFGKIFCISAYEIPESQ-RGVALNALFPMGNDEKVL--LLGTQNQ 576

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672
           +L+ +S KG        ++     +G  +  +   + + ++V VT   + V+    K L 
Sbjct: 577 ELIAISEKGKGKRFRL-DVEKIPSRGGYYFLLDPGDMVSVIVPVTSKELVVISAQGKALR 635

Query: 673 FSIDQIPEMS-RGKGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
             ++ IPE   R  GV++   Y+   +    C K       +     +Y +  +      
Sbjct: 636 LDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQK---YIVTMTENAYAKRTDIDEIPK 692

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
             RG  G  + K    +G  + 
Sbjct: 693 RNRGAAGVFIHKANETTGPVIG 714


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 221/632 (34%), Positives = 370/632 (58%), Gaps = 22/632 (3%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA+   EA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVG
Sbjct: 15  AAHALYEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 74

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR G
Sbjct: 75  MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 134

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES 
Sbjct: 135 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 189

Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW
Sbjct: 190 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 249

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           ++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT
Sbjct: 250 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLT 309

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  EI+   +
Sbjct: 310 DIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADAD 369

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        RR+   E     KA  ++ ++  E ITVV+S +GWIR  K H+VD  +L+
Sbjct: 370 KFGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLN 423

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           +K GD+        +  + + L +DG++Y+L +  L S RG GE I   +++     I  
Sbjct: 424 YKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQ 483

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHV 661
             + +     LV S  G  F+ +  ++++  R GK  + +    ++   +++  +  D +
Sbjct: 484 VVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEI 543

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSA 715
             +    ++L+F I  +P++S+GKG ++ +    K     +V+     + +G +  + + 
Sbjct: 544 LAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAG 603

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 604 KRKLGLKVSDLDNFRGERGRRGALLPRGLQRV 635


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 254/703 (36%), Positives = 423/703 (60%), Gaps = 24/703 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GLD G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F  +YPL+ GQGN+G+
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             D  S AA RYTE+++T+ ++L++  +    VD++  ++    EPV+FPSK P++L NG
Sbjct: 61  QDDPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           TSGIAVGMAT IPSHN+ E+ +A + +++NP+  I  LL+ I GPDF     I+ S+E +
Sbjct: 121 TSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y+ GRGGF+ +A W  E        IV+  +PYQ   S+++E+IA+ ++ K+IP++ 
Sbjct: 181 EEIYKSGRGGFKAQAHWVKE-----KNNIVINALPYQASGSKILEQIADQMLKKKIPMVV 235

Query: 300 DIRDE--SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+ DE    E VR+V+  K+  ++ D +M  +F  +D++  + +NMN++S+   P+V  L
Sbjct: 236 DLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFSL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             ++KEWL  R+  + R+   R+  ++ R+ IL+GLLI YL++D++I IIR  D+PK  +
Sbjct: 296 VEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDI 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              F L++ Q +AIL ++LR L KLE+ +++ E D LL E+ +I+ +LNS  +    I  
Sbjct: 356 TKAFKLSDIQANAILEIKLRQLAKLEQIKLEQERDALLEEQNEIEKILNSKTRLKTLIKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ F      G  R +    S   K   ++  +  E ITVV+S  GWIRS K H 
Sbjct: 416 ELLEIKDGF------GEDRKSPIRQSSDAKVFSEEDTLVTESITVVLSEAGWIRSAKGHE 469

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           +D S+L ++  D L+      +    + L ++GKAY+LP+ +L S RG G+ I   +  +
Sbjct: 470 IDPSSLAYRGEDKLQDFCQGKSNQIAVFLDSNGKAYSLPSHSLPSARGMGDPITGRVSAD 529

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
                ++  + +   K +++++ G  +I E S +++N + G+ F+K+ ++ ++  V+KV 
Sbjct: 530 SGVKFISTVIGNDIDKFMIMNTAGYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVR 589

Query: 658 GDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708
            DHV  A V    +LLIF ID++P + +GKG ++ +        K+  +S      +   
Sbjct: 590 EDHVYIAAVSNIGRLLIFKIDELPVLGKGKGNKIINIPTPKFLAKEEYMSHAQLISLSSS 649

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           L  I+S  R       DL  ++  R   G+++P+G+ +    +
Sbjct: 650 LR-IESGKRFLTLKLKDLQNYISSRAKRGNMLPQGYRKVDLMV 691


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/777 (29%), Positives = 392/777 (50%), Gaps = 52/777 (6%)

Query: 1   MGVDNISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M     SN     +EN   V  + +   ++  +L Y++S I  RA+PD+RDG KPV RRI
Sbjct: 1   MAKRTTSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +MSEMGL       KS+R+VG+V+GK HPHGD ++YD+LVR+AQPF  R PL+ G GN
Sbjct: 61  LFSMSEMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGN 120

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++D D  AA RYTEAR+   A ++  G+DED VDF   Y+++  +P V P+ +PNLL 
Sbjct: 121 FGSLD-DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLV 179

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAVG ATS+P HN+ E+  AA  LI +P+ S++ L++++ GPD P GG IV   +
Sbjct: 180 NGVSGIAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIV-GLD 238

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  G+G F+ RA   +E++      IVVTE+PY V   ++IE++  L+  K++  
Sbjct: 239 GIRDAYLTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQG 298

Query: 298 LEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           + D++D +       ++       +P+ ++E +F L+ ME  F +N   L  G+ PQ + 
Sbjct: 299 ISDVKDLTDRKHGLRMVIEVKNGFNPEAVLEQLFKLTPMEDSFGINNVALVDGQ-PQTLG 357

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L+ ++  R  V+ RR+++R++    ++ ++ GLLIA L+IDE+I +IR  D     
Sbjct: 358 LKDLLRHYVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTATA 417

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  +   F L+E Q + IL L+LR L K    +++++ D L  + ++++++L   K    
Sbjct: 418 RQRLRDVFDLSELQANYILELQLRRLTKFSRLELENQRDELEKQIQELEAILGDEKLLQR 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RS 532
            ++ E+ +V + +        RRT   E +    +      +  +P  V++S+ G + R+
Sbjct: 478 MVSTELADVAKKYGTP-----RRTVLLESAGNPVSAAAPLEVSDDPCWVLLSSTGLLART 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGR 584
             +  +       K  D++  A+       + L+++ G+   + A  L            
Sbjct: 533 SNAEPIPAEGPRAKH-DAVISAVRTTARGEVGLVTSRGRMIRISALELPTLPPLGGAPSL 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIV-----EESEIIANTRKG 638
             G  +   +DL   ++ +T    D     L + +++G    V     +  +        
Sbjct: 592 SGGAPLAAYVDLPRGEEPITVVSLDPDGPGLALGTAQGIVKRVTSDQPKSHDWE------ 645

Query: 639 KTFLKVSSEEKMKLV-VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
              + +   + +      VTGD  +  V  + +LL F    +    R G G+       G
Sbjct: 646 --VISLKDGDTVVGAGQVVTGDEDLVFVTSDAQLLRFPAHAVRPQGRSGGGIAGVRLTAG 703

Query: 696 -GISDVICFKICEGLTWIDSAG--------RSYNRSENDLLGWLGK-RGGVGSLVPK 742
             ++             + ++G        +        L  + GK RG  G    +
Sbjct: 704 ERVAFFGVVDPAREAVVVTASGSADALPGTQPGAIKATPLSEYPGKGRGTGGVRAHR 760


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/804 (32%), Positives = 410/804 (50%), Gaps = 67/804 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G  +  + + L E  ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RR+++ M
Sbjct: 18  GKADPFDESLLAE--IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTM 75

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           S + LD  A   K A++VG+V+GK HPHGD S+Y++LVR++Q F  R P+I G GNFG+I
Sbjct: 76  SLLRLDSSAKHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSI 135

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+AAA RYTE RMT +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +
Sbjct: 136 DGDNAAAMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGAT 195

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESI 239
           GIAVGMAT+IP HN++E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E +
Sbjct: 196 GIAVGMATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEEL 255

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y  G G  ++R    V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++
Sbjct: 256 REIYATGTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQ 315

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV----- 354
           ++RD S ED+R+ L  K  + D D ++  ++  + ++T F +N+  L+    P+V     
Sbjct: 316 EVRDLSTEDIRVDLLLKK-NADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKR 374

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--- 411
           + L  IL  +L  R +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+ +   
Sbjct: 375 LGLKEILWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKA 434

Query: 412 ------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                             + +    +   L   Q DAIL L+L  L +LE   +  EL  
Sbjct: 435 DAAEKIMKRFPVKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKK 494

Query: 454 LLAEKEKIDSLLNSGKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
                ++I+ LL   +       +W  I  E++ +   +   T  GRRR+T    +  + 
Sbjct: 495 KRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGN-TPAGRRRSTIVVPTE-EV 552

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++  I  E   V+++  GW++  K    D S    ++GD++   +  +T   +   S
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFS 611

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------ST 611
           + G  YT    ++ +  G GE IQ L      + I+ A   D                  
Sbjct: 612 SLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPA 671

Query: 612 CKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRK 669
              L  S+ G A           +TR G+ F +V     +  VV + G   V  V  + +
Sbjct: 672 THALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADAR 731

Query: 670 LLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG--LTWIDSAGRSYNRSENDL 726
            ++   D+I  +   GKGV L   K      ++ FK   G          R   ++ +  
Sbjct: 732 AMVCPADEINYLSGAGKGVLL--LKLAASDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTA 789

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
                 RGG G        ++GK 
Sbjct: 790 KYRTTSRGGRGI----ELQKNGKI 809


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 219/756 (28%), Positives = 387/756 (51%), Gaps = 32/756 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      F   FKK
Sbjct: 6   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKPFKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG ++G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGDS AA RYTE+
Sbjct: 66  AAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++  +L  +D+D V+    +++ + EP V P++FPNLL NG +GI+ G AT IP H
Sbjct: 126 RLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + L+ +P  S+  L++++ GPDFPTG I++  +  I E+Y  GRG  +VRA
Sbjct: 186 NLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDK-GIKEAYESGRGRIQVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++  G   IVVTEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+ +
Sbjct: 305 ELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQV-GLKRILSSYLEHDADVITK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431
           R+ + +     R+EI++GL+ A   +D++I  IR   N+   K  ++ +FS T  Q +AI
Sbjct: 364 RTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDKFSFTPRQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +   +++E  +L  +    D LL   K    QI  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---SALHFKEG 548
            G  R T      A     ++A++ +E + V++S  G+++     S      S     + 
Sbjct: 479 -GSERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENGLPDF 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D +       T   + + +  G     P   L+  +    G+ +   + L+ ++ I+  F
Sbjct: 538 DKVVFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVF 597

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV------ 656
                DS    L+ ++ G    +  ++I    T K +  + +  +E    VV+V      
Sbjct: 598 ELAKLDSRLNFLLATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPD 657

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW---- 711
           T   + +   +   + + +++IP    R  GV+  + KD          + E L      
Sbjct: 658 TKKEITLFTNHAYAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPEYLDMMKLG 717

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           I +   ++   + +L+  +  R   G LV +   ++
Sbjct: 718 IVTQRGAFKEFKYELINKV-SRAKRGVLVLRELKKN 752


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/748 (28%), Positives = 391/748 (52%), Gaps = 24/748 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G     
Sbjct: 2   SLPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F+KSA+ VG VIG  HPHGD SVY+++VR++Q F  R  LI   GN G++DGD  AA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT 
Sbjct: 122 YTEARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI EA +  +D P+ S+  +++ + GPDFPTG  I++  + I ++Y  G+G  
Sbjct: 182 IPPHNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTG-GIIQGIDGIRKAYETGKGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR++  VE++  G   I + EIPY+V K+ L+++I EL I KRI  + ++RDE+     
Sbjct: 241 IVRSKTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  +++H++E
Sbjct: 301 RIAVELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNK-RPELMGIIAMLDAYISHQKE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           ++ +RS + ++    R  I++GL+ A   +DE+I +IR        K  +   +  +E Q
Sbjct: 360 IITKRSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQTYQFSERQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   + + +  E   L A+ + ++ +L    +    +  E+ E+K+ + 
Sbjct: 420 AEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKILGDEGELVKTLKAELTEIKKNYK 479

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                   R T  E   A+    ++ ++  E + V ++  G+++     S   S    L 
Sbjct: 480 TP------RLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKRTSYRSYTASKGDELA 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQD 601
            KE D        +T D +LL ++ G     P   L   R    G+ +  ++ ++   ++
Sbjct: 534 MKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPDIRWKNLGDHVSHIVTEMGSGEE 593

Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVT 657
           ++ A      + T KL+ ++  G   +   +        K    +K+ +++K+  V    
Sbjct: 594 VIQALPLSKANETQKLVFLTQAGMTKVSLIANYRPQRYSKAMMAIKLKADDKLLNVAVAD 653

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDS 714
           G + + +   N   L + I +IPE   R  GV+  + K+   +   +  +  E    I +
Sbjct: 654 GSEDIFIATRNGYGLRYPITEIPESGTRTAGVKAINLKETDEVVGGVLLQSEENRGIILT 713

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             R   +           R   G L+ +
Sbjct: 714 TQRGSMKKMKASEFEAISRAKRGLLMLR 741


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/764 (31%), Positives = 382/764 (50%), Gaps = 44/764 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S      EE +  + +   ++  YL YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   SPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R P++ G GNFG++  D  
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+  + EPV  P+ +PNLL NGTSGIAV
Sbjct: 128 PAAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG IV     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIV-GLAGVRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  ++ RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDRF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  
Sbjct: 426 DLSDVQTQYILDTPLRRLTKFDRIELESERDRLNAEIEELTRILDSDAELRKLVSSELAT 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S           +  +P  V++S+ G + R+        
Sbjct: 486 VGKKFGTP-----RRTVLLE-SADAPVAAVPLEVADDPCRVLLSSTGLLARTANGEPFAG 539

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQL 592
                 + D +  A+ A     +  +++ G+   L   +L              G  I  
Sbjct: 540 EQTKRSKHDVIVSAVPATARAEVGAVTSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAE 599

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L   ++++     D +   L + + +G    V   +  A+ ++    + +   +++ 
Sbjct: 600 FLSLEEGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAH-KEELEVIGLKEGDRIV 657

Query: 652 LVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKI 705
             V  +   + +  + +N  LL +   Q+    R      GV+L    D  +        
Sbjct: 658 GAVELRTGEEDLVFITDNAHLLRYPAGQVRPQGRAAGGMAGVKL--APDAKVISFTAVDP 715

Query: 706 CEGLTWIDSAG----------RSYNRSENDLLGWLGKRGGVGSL 739
                    +G          ++   +  D     G R   G  
Sbjct: 716 AVDAVVFTVSGTHGTLDDSVQQTAKLTPFDQYPRKG-RATGGVR 758


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/604 (39%), Positives = 367/604 (60%), Gaps = 23/604 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N   V +   ++  YL Y++S I  RA+PD+RDG KPVHRRI+ +MSEMG+     FKKS
Sbjct: 39  NESNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKS 98

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD SVY ++VR+AQ F  RY LI G GNFG+IDGD AAA RYTEAR
Sbjct: 99  ARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEAR 158

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++ E +L  + +D +D+R  ++E   EPVV P+K PNLL NG +GIAVGMAT+IP HN
Sbjct: 159 MAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHN 218

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  +ALIDNPEISI++L+ YI GPDFPTGGI +  ++ I ++YR GRG  RV  R
Sbjct: 219 LGEVVDGIVALIDNPEISIDELITYIKGPDFPTGGI-INGKQGIYDAYRTGRGKLRVAGR 277

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE    G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDE+  D   ++  
Sbjct: 278 VEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIE 337

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++ S++  +D++  F + M  L     P+V+ L  +L+++L HR EV+ RR
Sbjct: 338 LKKGEESELILNSLYKFTDLQNTFGVIMLALVDNA-PRVLNLKQVLQKYLEHRFEVITRR 396

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + F ++    R  IL+G  IA  NI+E+I IIR        +  ++++F  +E Q  AIL
Sbjct: 397 TEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIAKFGFSEIQAKAIL 456

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +I  E + L+   E++  +L+   + +  I  E  ++KE F      
Sbjct: 457 DMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEALKLKEDFGDE--- 513

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALH 544
             RRT   E+  A      + +I+ E + V ++ +G+++          K   + ++A +
Sbjct: 514 --RRT---EIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATN 568

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
             E D +K    A T D +L+ +T GK +++    +     +  G+ I  +I+L+ ++ +
Sbjct: 569 TIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKLIGNIINLDTDEKV 628

Query: 603 VTAF 606
            T  
Sbjct: 629 STII 632



 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLV- 653
           N   +I    +      ++ ++ KG    V      +  R G          ++ +K + 
Sbjct: 520 NARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTIEDDVVKDMY 579

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
           +  T D + +     K+    + +IPE  +  +G +L  
Sbjct: 580 IAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARG-KLIG 617


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 210/676 (31%), Positives = 335/676 (49%), Gaps = 61/676 (9%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            +V+GK HPHG+ ++YD+L R+AQ +  R PLI GQGNFG++DGD  AA RYTE R+ + 
Sbjct: 9   VDVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKA 68

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+
Sbjct: 69  AHSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEV 128

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  GRG   +R    +E
Sbjct: 129 IDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIE 187

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +      I++TEIPYQV K+ +IEK+AEL+  KRI  + D+RDES      V+    R 
Sbjct: 188 PMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRD 247

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            + ++++  ++  + ++T F  NM  L+ G  P+ + L  +L+ +++ R EV+ RR+ F 
Sbjct: 248 ANAEVILNQLYRYTPLQTSFGCNMVALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFL 306

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------- 419
           ++    R  +L GL IA  NIDE+I +IR    P+                         
Sbjct: 307 LRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDD 366

Query: 420 ---------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                     ++L+E Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +
Sbjct: 367 PRHRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVR 426

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +  E+  V++ F        RRT   E+         + +I +E + V +S+ G+I
Sbjct: 427 IQTIVKDELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYI 478

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +          +      S +  ++ D +      +T   +L  S+ G  Y      L  
Sbjct: 479 KRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPI 538

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIAN 634
           G     G+A+  ++ L   + I T               ++  +++G     + S+ +  
Sbjct: 539 GTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQV 598

Query: 635 TRKGKTFLKV-SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQ 690
            R GK  +K+    +++  V   T  D V +     + + FS+D +     R   GVR  
Sbjct: 599 NRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGI 658

Query: 691 SYKDGGISDVICFKIC 706
           +  +G    +I   I 
Sbjct: 659 NLGEG--DRIISMTIV 672


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/821 (28%), Positives = 378/821 (46%), Gaps = 105/821 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + EN+    +   +EE Y+ YA+S I  RA+PD+RDG KPVHRRI+  M + G      +
Sbjct: 1   MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR VGEV+GK HPHGDQ++YD++VR+AQ F  RYPLI GQGNFG+IDGD  AA RYT
Sbjct: 61  SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ ++++ +L  +++D +D    +++ ++EP V P++ PNLL NG+ GIAVGMAT IP
Sbjct: 121 ESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIP 180

Query: 193 SHNVQEICEAALA-------------LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            HN+ E+  A                L + P+I   + +EY+ GPDFPTG   +   + I
Sbjct: 181 PHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGA-TIHGVDGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           ++ YR G G F++R+   V+E  RG   +VV  IPYQV+K+ +++ IAEL+    I  + 
Sbjct: 240 LDMYRTGNGRFQIRSDVEVQEDSRGK-RLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DIRDES+++   V+    ++ DP  ++  ++  S ++  +  NM  +  G   Q + L  
Sbjct: 299 DIRDESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQ-LDLRT 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------- 411
           IL  ++ HR  V+ RR+ F     + R  IL GLL A   + EII + R+ D        
Sbjct: 358 ILHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQY 417

Query: 412 ---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                K   + RF  ++ Q  AI   RL  L KL   ++  EL  L    +   ++L S 
Sbjct: 418 LRGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILGSR 477

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            ++ N I  E+ EV +          RR+          +  ++ ++ ++ I + ++   
Sbjct: 478 IRRLNIIISELDEVVDRHGDE-----RRSRI---DPMPLSMDREDLVAEQAIVISLTRDN 529

Query: 529 WIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +IR                L  +  KE D+    +   + DR+L+ +  G+ Y L A   
Sbjct: 530 YIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWET 589

Query: 581 LSGR--GHGEAIQLLID-LNHNQDIVTAFVY-------DSTCKLLVVSSKGNAFIVEESE 630
            S    G G  I+ L+  +  ++ +++                L+  ++ G       SE
Sbjct: 590 PSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSE 649

Query: 631 IIANTRKGKTFLKVSSEEKMKLVV---KVTGDHVAVVGENRKLLIFSIDQ---------- 677
            +   R GK  L+ +  E+  LV        DHV +V  +     F   Q          
Sbjct: 650 YVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSG 709

Query: 678 -------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGL--TWIDSAGRSYNRSEN--- 724
                  +    R  +GV     + G    VI   + +    + +  +     +      
Sbjct: 710 ETITTHVVRVQGRVSQGVSGMKLRKG--DQVIGMIVTDDFDTSVLTISRYGMAKRSRLGS 767

Query: 725 ---------------DLL---------GWLGKRGGVGSLVP 741
                          D                RG  G    
Sbjct: 768 GEMKPVLDDDSMPVLDEDGGLVQQRDGYRRTNRGTRGVRTM 808



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 73/273 (26%), Gaps = 62/273 (22%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILL 565
              +    +  +  G I+  +         + K        E D+L     A   D ++L
Sbjct: 626 ENPEGHYLMFATANGRIKKSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVL 685

Query: 566 LSTDGKAYTLPAGNLLSGRGH--GEAIQLLI--------------DLNHNQDIVTAFVYD 609
           +S+ G A         S      GE I   +               L     ++   V D
Sbjct: 686 VSSHGNACRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTD 745

Query: 610 S-TCKLLVVSSKGNAFIVEESE---------------------------IIANTR--KGK 639
                +L +S  G A                                       R  +G 
Sbjct: 746 DFDTSVLTISRYGMAKRSRLGSGEMKPVLDDDSMPVLDEDGGLVQQRDGYRRTNRGTRGV 805

Query: 640 TFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKD- 694
             + +   + +  V +V    D + ++     ++     Q  E + +  KG R+   ++ 
Sbjct: 806 RTMSLRDGDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRIMELRNA 865

Query: 695 ---GGISDVICFKICEGLTWIDSAGRSYNRSEN 724
              G + ++I            S     +  E 
Sbjct: 866 DRTGYVDEIIFVARLPADLVDSSDAEGPSLEEE 898


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 183/648 (28%), Positives = 311/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN++E+ EA    +DN E   E     + E + GPDFPT G+IV S + I ++Y  G
Sbjct: 610  IPPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGS-QGIHDAYTTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
            RG  R+R    +EE  RG   IV+TE+PYQV     I  IAE +   R+  + +I D+S 
Sbjct: 669  RGSIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSS 728

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 729  DRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
            AH+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D  +  ++    
Sbjct: 788  AHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E+
Sbjct: 848  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             +          RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 908  VDKHGD-----DRRTRIV---AADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++    + T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V   + + + +V  N + + FS     +  M R   GV+   +       +    +
Sbjct: 1080 LVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNTDDYL-LSLNVV 1138

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             EG   + +    Y +        +  RGG G L      R GK + +
Sbjct: 1139 REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDRRRGKLVGA 1186



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 82/130 (63%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYT 132
            D  AA RY 
Sbjct: 122 NDPPAAMRYC 131



 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 14/231 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRGYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +   + + +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCSSEEDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNTDDYLLSLNVVREGT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V       K+   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDRRRGKLVGALIVDDDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
             ++     Q+ +  R  KGVRL +  +      I     E    +      
Sbjct: 1203 GVIRTDARQVRKAGRQTKGVRLMNLGEDNTLLAIARNAEENADEVVEEAEG 1253


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/743 (31%), Positives = 388/743 (52%), Gaps = 24/743 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
             +V +  L   + +R+  Y+   I++RA+PD RDG KPV RRI++AM E G  +   ++
Sbjct: 12  HSSVISSPLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKGYR 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVYD++VR++Q +  R P I  QGN G+ID D AAA RYTE
Sbjct: 72  KSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+ +++E +L+ ++++ V +   +++   EP V P+++PNLL NG +GIA G AT+IP 
Sbjct: 132 ARLGRISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +AA+  I + + S+++L+EYI GPDFPTGGI V+  E I E++  G+G   +R
Sbjct: 192 HNLSEAIDAAVYRIQHADCSLDELMEYIQGPDFPTGGI-VQGIEGIREAFETGKGRIIIR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +  +E+  +    IV+TEIPY+V KS +++KI ++ + K+I  + D+RDES  +   V+
Sbjct: 251 GKANIEQ-KKTVQQIVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRVV 309

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  +++  ++  +D++  +  N+  +   R  Q M L  +L  ++ HRREV+ 
Sbjct: 310 VDMKKDANAQVILNYLYKNTDLQVSYNYNVVAIVDKRPVQ-MGLAPMLDAFIEHRREVIE 368

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           RRS F ++  + R  IL+GL+ A   +DEIIA+IR        K  ++  F+ ++ Q +A
Sbjct: 369 RRSRFDLKKKEDRCHILEGLIKAVSVLDEIIALIRASKDKADSKRRIMDAFAFSDAQAEA 428

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RL  L   +  Q++ E   LL E E++  +L + K     +  E+ EVK+ F    
Sbjct: 429 IVTMRLYRLSSTDITQLREEYAALLNEIEELHDILENPKMLKKVMIRELNEVKKAFKTP- 487

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKE 547
                R T  E    +    + AMI  E +   IS  G+ + +   S   S       KE
Sbjct: 488 -----RLTSIEHEIEEIVIDKLAMINSEQVMFTISRDGYFKRVSMRSYGASRDDMTGLKE 542

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
           GD L      +T D +L  +T G     P  ++   R    G  I   I ++  + I  A
Sbjct: 543 GDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYDVEESRWKEIGSHINSTIRISGEEKITDA 602

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMK-LVVKVTGDH 660
           FV   + +   ++ V+  G        E  ++   K  + +K+   + +   +V    D 
Sbjct: 603 FVLRSFATNAYMISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDE 662

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
           + +  +N  +  + +  IPE S R KGV+  +     I    C    +    I    +  
Sbjct: 663 ILIASKNGFVSRYPVSLIPETSPRSKGVKAMNLVLDEIVSA-CISHGDASQLIVFTDQCQ 721

Query: 720 NRSENDLLGWLGKRGGVGSLVPK 742
            +        +  R   GS++ K
Sbjct: 722 MKRIKLSDVDVTGRPTKGSMICK 744


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 253/727 (34%), Positives = 388/727 (53%), Gaps = 51/727 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   L++ YL YA+S I  RA+PD+RDG KPV RRI++AM EMGL       K AR+VG
Sbjct: 8   DIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVG 67

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V+G  HPHGD  VY++LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTE R+T++A
Sbjct: 68  HVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIA 127

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D++ VDF+  ++    EPVV P+K PNLL NG +GIAVGM T+IP HN++E+C
Sbjct: 128 EKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVC 187

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I NP ISIE+L+ +I GPDFPTGG+IV  R+ I+E+YR G+G   +R +  VEE
Sbjct: 188 DGIIAYIKNPNISIEELMNFIKGPDFPTGGVIV-GRDGIIEAYRTGKGKIILRGKVDVEE 246

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  I++ EIPY V K++L+EKIA+LI   ++   + +RDES  +   V+       
Sbjct: 247 DK-----IIIREIPYMVNKAKLVEKIADLIKKDKLLA-KTVRDESDREGIRVVIELK--E 298

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP   ++ ++  + ++  F + M  L     P+++ L  ++  ++ HRREV+ R++ + +
Sbjct: 299 DPYSALKKLYDHTPLKVTFNVVMLALVNNE-PKLLNLKELIAHYVNHRREVVRRKAEYEL 357

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLR 437
           +  + R  I++GL+ A   +DE+I +I+  D     K  ++    +TE Q +AIL LRL+
Sbjct: 358 KKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQ 417

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L +LE   +  E + L    +++ S+L   K+    I  E+REVK  F        RRT
Sbjct: 418 MLTRLEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGD-----NRRT 472

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
                   DK  L++ +   E   V ++  G I+  +      S          KI L A
Sbjct: 473 EII-----DKEILKEVV---EEFGVAVTLDGQIKRFEIGKALRSN--------PKILLRA 516

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            +   ILL S+D KAY++ A ++            L      + + T  V  +   ++++
Sbjct: 517 MSNLDILLFSSD-KAYSIHARDIP------LDFTPLSKFISAEKVETGVV--AKGDVVIL 567

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677
           S  GN   V   E     R G         E +          V +  +N  ++ F   +
Sbjct: 568 SKDGNIKKVRLEEFANAKRAGIIA-----GENIGFARLYEDGDVIIATKNGYIVRFRSSE 622

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           IPE  R  KGV+  + ++G   ++    I +G   +      Y +        L  RG +
Sbjct: 623 IPEYGRSAKGVKAITLREG--DEIAWMSIGKGDYVLILTRDGYAKKVPIDEFRLTNRGAM 680

Query: 737 GSLVPKG 743
           G    +G
Sbjct: 681 GVRGVRG 687


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/752 (28%), Positives = 400/752 (53%), Gaps = 32/752 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++++ ++L   + +R+  Y+   I++RA+PD+RDG KPV RRI++AMS  G      F+K
Sbjct: 5   QDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQFRK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD AAA RYTEA
Sbjct: 65  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++E +L+ +D+  V+F   +++ + EP V P+++PNLL NG +GI+ G AT IP+H
Sbjct: 125 RLSKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEIPTH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A +  ID+P+ ++++L++++ GPDFPTGGI ++  E + ++Y  GRG   +R+
Sbjct: 185 NLGEVIDATIHAIDHPKATVKELMQFVKGPDFPTGGI-IQGLEELEQAYETGRGKVVIRS 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   I+++EIPY+V K+ L++KI E+ + K+I  + ++RDES      ++ 
Sbjct: 244 KTKIEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  + + ++  +   +D++  +  NM  +   R  QV  L  IL  ++  ++EV+ R
Sbjct: 304 ELKKEANAEGILNYLLKNTDLQVNYNFNMVAIDERRPVQV-GLKTILTSYINFQKEVITR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ + ++    R+ I+ GL+ A   +DE+IA+IRN       K  +V  +  T  Q +AI
Sbjct: 363 RTQYDLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVETYDFTMIQAEAI 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           +NL+L  L   +   +++E  +L  +     S+L S K     +  E+R++K+ ++    
Sbjct: 423 VNLQLYRLTNTDITILQNEKLDLNEQIATFLSILKSEKTLLQVMKSELRDLKKKYATP-- 480

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R T  +    +     + ++ +E + VV + +G+ + +   S   SA      +EG
Sbjct: 481 ----RLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYYKRVSPRSFASSAPEENGMREG 536

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D + +   A T D ++L ++ G    LP   +     +  G  +   I L  N+ I+T F
Sbjct: 537 DEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKWKDVGNHLSQSISLGSNEVILTGF 596

Query: 607 VYDSTCK-------LLVVSSKGNAFIVEESEIIANT---RKGKTFLKVS-SEEKMKLVVK 655
           V             ++  + +G       +E         +    +K+  + +++  VV 
Sbjct: 597 VKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEFTTYRGYKTRTSNAMKLKTTTDEVVKVVV 656

Query: 656 VTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEG-LT 710
              +   V +V      L + + +IP +     GV+  +  K+  ++  + + +    ++
Sbjct: 657 TNPESLEVFIVTHCGFGLRYELSEIPVVGTVASGVKAINLRKEDFVAGAMVYSLEHKVVS 716

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              +  R   +  N L   +  R   G +V +
Sbjct: 717 AFLTTQRGAVKRFNVLEISMLTRAKRGLMVLR 748


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 394/751 (52%), Gaps = 32/751 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +KK
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYTE+
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++   + I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVL-GTKGIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H+++V+ +
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLTHKKDVVTK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F ++   +R+EI++GL+ A   +D++I  IR+       K  +++++  T NQ +AI
Sbjct: 364 RTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKNNLIAKYEFTPNQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  Q+K E   L  + +K + +L+  +     +  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILSDNQVLEKVVVKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
            G  R T      A     ++A++  E + V++S  G+++     S    D S     +G
Sbjct: 479 -GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLPDG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D +       T D + + +  G     P   L+  +    G+ +   I L+ +++I+  F
Sbjct: 538 DKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEIIRVF 597

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVVKV 656
             +        L+ ++ G    V  +++        +  T +K+ S+E    ++  V   
Sbjct: 598 EINDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSKESKVVRIDQVKPD 657

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           +   + ++      + F I +IP    +  GV+  + KD            + +  I+  
Sbjct: 658 SKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVNYVLADPKYVDLINIG 717

Query: 716 ----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 ++ + + +L+  +  R   G LV +
Sbjct: 718 IITQRGAFKQLKLNLINKVT-RAKRGVLVLR 747


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 260/804 (32%), Positives = 410/804 (50%), Gaps = 67/804 (8%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G  +  + + L E  ++ + LRFA ++RYL Y+LS I  RA+PD+RDG KPV RRI++ M
Sbjct: 18  GKADPFDESLLAE--IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTM 75

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           S+  LD  A  +K A++VG+V+G  HPHGD S+Y++LVR++Q F  R P+I G GNFG+I
Sbjct: 76  SQQRLDATAKHRKCAKVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSI 135

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD+AAA RYTE RMT +A  +L  +    V F+  Y+    EPVV PS+ P+LL NG +
Sbjct: 136 DGDNAAAMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGAT 195

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESI 239
           GIAVGMAT+IP HN++E+C A L L+ NPEI   +L+  + I GPDFPTGG I  ++E +
Sbjct: 196 GIAVGMATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEEL 255

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E Y  G G  ++R    V E  R    + +TEIP+ V K+ ++E+IAEL+ + ++PL++
Sbjct: 256 REIYATGTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQ 315

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV----- 354
           ++RD S ED+R+ L  K  + D D ++  ++  + ++T F +N+  L+    P+V     
Sbjct: 316 EVRDLSTEDIRVDLLLKK-NADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKR 374

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--- 411
           + L  IL  +L  R +VL  R +  ++A+++R+ IL+GL + +  +DEII IIR+ +   
Sbjct: 375 LGLKEILWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKA 434

Query: 412 ------------------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                             + +    +   L   Q DAIL L+L  L +LE   +  EL  
Sbjct: 435 DAAEKIMKRFPVKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKK 494

Query: 454 LLAEKEKIDSLLNSGKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
                ++I+ LL   +       +W  I  E++ +   +   T  GRRR+T    +  + 
Sbjct: 495 KRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGN-TPAGRRRSTIVVPTE-EV 552

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              ++  I  E   V+++  GW++  K    D S    ++GD++   +  +T   +   S
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFS 611

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------ST 611
           + G  YT    ++ +  G GE IQ L      + I+ A   D                  
Sbjct: 612 SLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPA 671

Query: 612 CKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRK 669
              L  S+ G A           +TR G+ F +V     +  VV + G   V  V  + +
Sbjct: 672 THALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADAR 731

Query: 670 LLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG--LTWIDSAGRSYNRSENDL 726
            ++   D+I  +   GKGV L   K      ++ FK   G          R   ++ +  
Sbjct: 732 AMVCPADEINYLSGAGKGVLL--LKLAASDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTA 789

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750
                 RGG G        ++GK 
Sbjct: 790 KYRTTSRGGRGI----ELQKNGKI 809


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/762 (30%), Positives = 382/762 (50%), Gaps = 42/762 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    V    L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL   
Sbjct: 8   DLLTSGQVIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPD 67

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             F+K AR+VG+V+GK HPHGDQ+VY++LVRL QPF  RYPL++G GNFG+IDGD  AA 
Sbjct: 68  RPFRKCARVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAM 127

Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A  ++LQ + E  VDF   ++    EP+V P++ P LL NG++GIAVGMA
Sbjct: 128 RYTETRLAAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +A +ALID P +S+ +LL Y+ GPDFPTGG+IVE    ++ +YR GRG
Sbjct: 188 TNIPPHNLGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEG-AGLLRAYRTGRG 246

Query: 249 GFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              +R    +E++  G        IVVTE+PYQV K+  IEK+A+L+   R+  + D+RD
Sbjct: 247 TITLRGVATLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRD 306

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  +   V+    R      L+E ++ L+ ++  + +N+  L  G  P+ + L  IL E
Sbjct: 307 ESDREGLRVVIELKRDAPAAQLLEQLYHLTALQVTYGINLMALV-GNQPRQLSLKEILSE 365

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---R 420
           +L  R + L R+    +     R  ++ GLLI+   ++++I I+R+    +        R
Sbjct: 366 FLQFREQTLLRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMIR 425

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             L++ Q  A++ + LR L + E  +++ E   L      + +L++   ++   +  E+R
Sbjct: 426 LGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQTLIHQRPERLKALKKELR 485

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++K+ F         R T    +  D                      W+       + L
Sbjct: 486 QLKKEFGDPRLTQILRETPAPEAVPDCGGDSL----------------WLEMSYRGDLPL 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGRGHGEAIQLLID 595
                     L +   A T+DR+ + +  GK Y L    L       G      + LL +
Sbjct: 530 QTWRPWSE-PLPLGFSAQTSDRLWVFTESGKVYPLSVERLPVTSHREGDRDQPLLTLLPE 588

Query: 596 LNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
               + +++     +T  KL++++ +G   ++  S +     +G    K+ + + +  V+
Sbjct: 589 SAQGETLLSVIPSQATADKLILLTRQGRIKVIPSSSLQNLRGRGLQLTKLKAGDTLGWVL 648

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLT 710
              GDH+ +     ++  F +  IP + R       VRL   +   +   I     E + 
Sbjct: 649 PAQGDHLVLATSRGRVFHFFLPDIPVLGRLHQGQAAVRL--SRQEILVGAIALSEHENVI 706

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            + ++G       + +   +   G +G L      +  +   
Sbjct: 707 LVTASGLGKQVPLSLIE--VVPLGHLGQLAIPLGQKLDRLAG 746


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 219/619 (35%), Positives = 345/619 (55%), Gaps = 23/619 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG+ +  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGV-IYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      V+    R     +++  +F  + +++ F +    L  G  P+ + L  ++K +
Sbjct: 300 SDRTGLRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNG-RPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR+   P   K  ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + E F      G  R T       +     + +I+KE + ++IS+ G+I+          
Sbjct: 479 IAEKF------GDERKTDIVADEVE-ELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  ++++  E D L     A T D I+ ++  GKAY L    +   S    G  I+
Sbjct: 532 NRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFVYDS 610
            L+ ++ +++I        
Sbjct: 592 SLLSVSSDEEITAVVSLKE 610



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVV 654
           +  +++    +      ++++S  G    +  +   +  R GK    + ++ ++ +  + 
Sbjct: 494 DEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIF 553

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
              T D++  +    K     + +I E SR         +   I  ++     E +T + 
Sbjct: 554 TASTHDYIMFITNAGKAYWLKVHEIQEASRTS-------RGSHIKSLLSVSSDEEITAVV 606

Query: 714 S 714
           S
Sbjct: 607 S 607


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/751 (28%), Positives = 394/751 (52%), Gaps = 32/751 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   +KK
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA RYTE+
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ L+ +P+ + + L+E++ GPDFPTGGI++   + I E+Y  GRG  +VR+
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVL-GTKGIKEAYETGRGRIQVRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  ++++      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+      ++ 
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +L H+++V+ +
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLTHKKDVVTK 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++   +R+EI++GL+ A   +D++I  IR+       K  +++++  T NQ +AI
Sbjct: 364 RTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKNAKNNLIAKYKFTPNQAEAI 423

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++L+L  L   +  Q+K E   L  + +K + +L+  K     +  E+  VK+ F     
Sbjct: 424 VSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILSDNKVLEKVVVKELNAVKKEF----- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEG 548
            G  R T      A     ++A++  E + V++S  G+++     S    D S     +G
Sbjct: 479 -GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNGLPDG 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D +       T D + + +  G     P   L+  +    G+ +   I L+++++I+  F
Sbjct: 538 DKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDNDEEIIRVF 597

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG---- 658
             +    +   L+ ++ G    V  +++    T K +    +  + K   VV++      
Sbjct: 598 EINDLKASLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKCKDSKVVRIDQVKPD 657

Query: 659 --DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + ++      + F I +IP    +  GV+  + KD            + +  I+  
Sbjct: 658 SKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVNYVLADPKYVDLINIG 717

Query: 716 ----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 ++ + + +L+  +  R   G LV +
Sbjct: 718 IITQRGAFKQLKLNLINKVT-RAKRGVLVLR 747


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 219/747 (29%), Positives = 387/747 (51%), Gaps = 30/747 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   F+KS
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD  AA RYTEAR
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT IP+HN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + LI +P  S++KL+E+I GPDFPTG  I++  + I ++Y+ GRG   VRA+
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTG-GIIQGIDGIRKAYQTGRGRVVVRAK 243

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E +      I VTEIPY+V K++L+++I +L +AK++  + + RDE+      +   
Sbjct: 244 TEIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIE 303

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R  + + ++  +   +D++  +  NM  +   R  +V  L  IL  +L  ++E++ RR
Sbjct: 304 LKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRV-GLKRILTSYLEFQKEIIRRR 362

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + +    +R+ I++GL+ A   +D++I  IR   N    K  +V  ++ T  Q +AI+
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKEYNFTPEQAEAIV 422

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  ++K E + L +   +   +L +  +    +  EIR +K+ F      
Sbjct: 423 TLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEF------ 476

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
           G  R T  E          +  +  E + V++S+ G+I+     S   S       +E D
Sbjct: 477 GNPRRTKIENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGLREDD 536

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
              +    +T   + + +  G     P   +   R    GE I   I L  N++I+ A +
Sbjct: 537 YPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAMI 596

Query: 608 YDSTCK---LLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLV---VKVTG 658
           +D   +   +++ +S G       ++    +R        +K+    ++  V        
Sbjct: 597 FDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNE 656

Query: 659 DHVAV-VGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSA 715
           +   + +      + + +  +P    R  GVR  + KD   ++D I  K  + +  I   
Sbjct: 657 NRSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQILVKDGQDIAVITQR 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G       +++   +G R   G LV +
Sbjct: 717 GAFKEMPVDEIE--VGARARRGELVLR 741


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/742 (31%), Positives = 393/742 (52%), Gaps = 20/742 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGDSAAA 
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAM 128

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++ AE +L+ +D+  V+F   +++E+ EP V P++FPNLL NG  GI+ G AT
Sbjct: 129 RYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYAT 188

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP HN+ E+ +A +ALIDNP I+ +++L+YI GPDFPTGGI V+ +  I E+   G G 
Sbjct: 189 KIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGI-VQGKAGIKEALTTGSGK 247

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +RA+  VEE+ +    IV+TEIPY+V K+ L+ +I  L I   I  + +IRDE+ ++ 
Sbjct: 248 IIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEG 307

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     +  D   +   +   SD++  +  NM  + +   P +     +LK +L H++
Sbjct: 308 LRIAIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAI-LKHRPVLSGAFELLKVYLEHQK 366

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           EV+  RS++ ++   +R  I+ GL+     + E+I  IR   N+   K  +  RF  +E 
Sbjct: 367 EVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSEL 426

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AI+ L+L  L   +   +  E D L  E  +++ +L++ +     I  E++EV+ + 
Sbjct: 427 QAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTL- 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHF 545
                L   R T  E         ++ +I  E   V I+  G+++     SV  S  +  
Sbjct: 486 -----LPSPRRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKEVGL 540

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIV 603
           KE D++      +T D +LL +  G+   LP   +     R  G  I  ++  +  + I+
Sbjct: 541 KENDAMLYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKGETII 600

Query: 604 TAFVYDS---TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
                       K+L+ + +G    V  ++  ++   +    +K+S ++++  V     D
Sbjct: 601 RVLKVSDFSIDQKILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSVDYNQLD 660

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
           ++  + ++  +L F  +++P       GV+  +  +G    V  F   E   +     R 
Sbjct: 661 NIVAISKHGYVLRFDTEELPVYGLTAGGVKSMALAEGDEVAV-AFYAKESDDFYFLTSRG 719

Query: 719 YNRSENDLLGWLGKRGGVGSLV 740
           +   +  L      R   G ++
Sbjct: 720 HIIKDTVLELPKYARNRRGIIL 741


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/762 (30%), Positives = 387/762 (50%), Gaps = 40/762 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGG-RIVGLGGIKDAYAA 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  ++++E D L  E  ++ ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELETERDKLSQEIAELTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S   +       +  +P  V++S+ G + R+  +  ++ 
Sbjct: 486 VAKKFGT-----DRRTVLLE-SAGSQVASVPLEVADDPCQVLLSSTGLLARTANAEPIEQ 539

Query: 541 SALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQ 591
           +    + + D++  A+ A     +  +++ G+   L   +L              G  + 
Sbjct: 540 TEDARRTKHDAIVSAVPATARGDVGAVTSAGRLLRLSVIDLPQLPDTHAAPNLSGGAPVA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L  ++ ++     D     L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLTLEADEQLICLTTLDEEALGLAIGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRI 657

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---------- 697
                ++   + +  +  + +LL +    +    R   G+      +G            
Sbjct: 658 VGATQLRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLTEGATVLSFTAVDPS 717

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            D   F +      +D + R++  +  D     G R   G  
Sbjct: 718 KDAAVFTVAGSHGTLDDSERTWKLTPFDQYPRKG-RATGGVR 758


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/777 (32%), Positives = 397/777 (51%), Gaps = 43/777 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
             D  +N      + +  VSL      RYL YA S I+ RA+PD+RDG KPV RRI++ M
Sbjct: 4   SKDADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVM 63

Query: 62  S-EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++ L   +  +K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI GQGNFG+
Sbjct: 64  YHDLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGS 123

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           I G   AA RYTEA++T +A  ++  +    V+ R+ Y+    EPVV PS+FP+LL NGT
Sbjct: 124 IIGLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGT 183

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVGMATSIP HN+ E+ +A L LIDNP+ ++ +L++Y+  PDFP GG IV  R  + 
Sbjct: 184 QGIAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELR 243

Query: 241 ESYRLGRGGFRVRARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
            +Y  GRG  +VR  W  +++  G+    +V+T IPY V+   L+  +  +  +K++P L
Sbjct: 244 NTYETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQL 303

Query: 299 EDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
             + DES E+    ++       D + +M  ++  + +E  F  N   L       +   
Sbjct: 304 VTVADESNEELGMRLVLEVKHENDAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPA 363

Query: 356 --PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-- 411
              L  +L+ +L  R EV+ +R  F +  +++R+ IL+G  I +  +D+ + +IR+    
Sbjct: 364 QCNLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGK 423

Query: 412 -KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                 ++  F L E Q DAIL + L  + +LE  +I  EL    AE E++  LL S  +
Sbjct: 424 ADAAQKLMKAFPLDEIQTDAILEMALYRISELEIDRIIEELKEKRAEAERLRKLLASETK 483

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            W  IA E+ E+ + +      G +R T    S         A I KE   VV+++ GWI
Sbjct: 484 MWRLIADELGELGKTY------GNKRRTGLGSSEEIAEFDPSAYIVKENTNVVLTSDGWI 537

Query: 531 RSL-KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           + + +  SVD   +  +EGD++   L A T D+I+  + DG AYTLP   + +  G+GE 
Sbjct: 538 KRVGRIQSVDK--MRVREGDTVINVLPASTLDQIVFFADDGTAYTLPIDQIPASSGYGEP 595

Query: 590 IQLLIDLNHNQDIVTAFVYDST-------------CKLLVVSSKGNAFIVEESEII-ANT 635
           +   I L     IV     D                 LL+ +  G    +  S     +T
Sbjct: 596 LAKHIKLADGAKIVHGITTDPRFTPEDDSDEESPLPYLLIATEMGQVMAISFSSFRPPST 655

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
           + G+ + +++  +K+  V  +   + + +  E  +++ F + ++P +   G+GV+     
Sbjct: 656 KVGRKYCRLAKGDKVVFVDLIREHYTMFLATEQARVIHFELAEVPLLAGPGRGVKGIKLA 715

Query: 694 DGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           +G   +  V+  +  + L  ++  G+     +      +  RGG G        R+G
Sbjct: 716 EGDSVLGGVLLGRPSDTLRVVNENGKQLAFGQA--KYGVTSRGGKGVKT---STRTG 767


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 214/755 (28%), Positives = 395/755 (52%), Gaps = 32/755 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+++ + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVL-GTKGIREAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR   ++   K  +++++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTSNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLEKVVVKELNAVKREF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                G  R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 479 -----GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++I
Sbjct: 534 LPAGDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   + + + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 IDSA----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I         ++ + + +L+  +  R   G LV +
Sbjct: 714 IKVGIITQRGAFKQLKLNLINKVT-RAKRGVLVLR 747


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/761 (31%), Positives = 388/761 (50%), Gaps = 41/761 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRTT  E S           +  +P  V++S+ G +    +    ++  
Sbjct: 489 KKFGT-----DRRTTLLE-SSGAPVAAVPLQVADDPCRVLLSSTGLLARTANDEPLVTEA 542

Query: 544 HFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL 593
             K  + D +  A+ A     + ++++ G+   +   +L              G  +   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK- 651
           + L  ++D+V     D +   L + + +G    V       + +     + +   +++  
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVG 660

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------ISD 699
            V   TGD  +  + ++ +LL +   Q+    R   GV      DG            +D
Sbjct: 661 GVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVDPAAD 720

Query: 700 VICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSL 739
            + F +      +D + ++    +  D     G R   G  
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 760


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 365/742 (49%), Gaps = 43/742 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
              +      E++  V +   +E  +L Y+ S I  RA+PD RDG KPV RRI+  M +M
Sbjct: 11  PQDDLPEDFVEHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQM 70

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PL+ G GNFG++D D
Sbjct: 71  GLRPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-D 129

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEARM   A  +   +DED VDF   Y+ +  +P V P+ +PNLL NG +GIA
Sbjct: 130 GPAAPRYTEARMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIA 189

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++  HN++E+   A  L+ NPE ++E+L++ I GPD P+GG  +   E I ++YR
Sbjct: 190 VGMATNMAPHNMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGG-RIVGLEGIRDAYR 248

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG FR RA   VE+V      IVVTE+PY V   ++ EKI + + AK++  + D+ D 
Sbjct: 249 TGRGSFRTRATVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDL 308

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +   +   ++       +P  ++  ++  + +E  F +N   L  G+ P+ M L  +L+ 
Sbjct: 309 TDRTNGLRLVIEVKNGFNPQAVLAQLYRHTPLEESFGINNVALVDGQ-PRTMGLLELLRV 367

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           +  HR  V+ RR++FR+     R+ +++GLLIA L+IDE+I IIR  +   + +  +++ 
Sbjct: 368 YTDHRIAVVRRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIAV 427

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+  Q + IL LRLR L K    ++++E D L  E  +++++L S       +A E+ 
Sbjct: 428 FDLSRAQAEHILELRLRQLTKFSRIELEAERDQLQKEIAELEAILGSETTLRGVVADELS 487

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSR-----------ADKATLQQAMIEKEPITVVISNRGW 529
           E  + F        RRT   E                 AT     I  +P  V +S  G 
Sbjct: 488 ETAQKFGDE-----RRTVLLEAEDLPAVTAAQTGGKKAATSVALEISDDPCWVFLSTTGR 542

Query: 530 I-RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL------- 581
           I RS     +   +  FK  D+L   + A     I  +++ G+   +   ++        
Sbjct: 543 IARSATRRPLADGSRRFKH-DALTSVVPATARGEIAAVTSTGRMLRVSCVDIPVLQDFDG 601

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRKG 638
                 G      + L  N+ +V           +V   ++ G    V     +   +  
Sbjct: 602 VPRLADGVPAADFLGLEKNEALVGLAPLSE----VVAIGTAAGVVKRVNPDYPLNLDQW- 656

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              +K+   +++  V     G  + +V  + KLL F    +    R   GV       G 
Sbjct: 657 -PAIKLKDGDRVVGVSAAPDGTELVMVSSDAKLLHFPASAVRPQGRTAGGVAGMKLAAGE 715

Query: 697 ISDVICFKICEGLTWIDSAGRS 718
                   + +  T + +  R 
Sbjct: 716 HVIFCAAVVPQDSTVVVTQARG 737


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/761 (31%), Positives = 388/761 (50%), Gaps = 41/761 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM + A L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELSRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRTT  E S           +  +P  V++S+ G +    +    ++  
Sbjct: 489 KKFGT-----DRRTTLLE-SSGAPVAAVPLQVADDPCRVLLSSTGLLARTANDEPLVTEA 542

Query: 544 HFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL 593
             K  + D +  A+ A     + ++++ G+   +   +L              G  +   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK- 651
           + L  ++D+V     D +   L + + +G    V       + +     + +   +++  
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVG 660

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------ISD 699
            V   TGD  +  + ++ +LL +   Q+    R   GV      DG            +D
Sbjct: 661 GVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVDPAAD 720

Query: 700 VICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSL 739
            + F +      +D + ++    +  D     G R   G  
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 760


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/762 (30%), Positives = 379/762 (49%), Gaps = 40/762 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VD++  Y+ ++ EPVV P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGG-RIVGLGGIKDAYAS 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E   + ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDRLNDEIAALTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E S   +       +  +P  V++S+ G +    +    + 
Sbjct: 486 VAKKFGT-----DRRTVLLE-SAGSQVASVPLEVADDPCRVLLSSTGLLARTANADPIVV 539

Query: 542 ALHFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQ 591
           A   K  + D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 AEDTKRTKHDVIVSAVPATARGDVGAVTSTGRLLRLSVIDLPQLPDTHTAPTLSGGAQIS 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     +     L + + +G    V         +     + +   +++
Sbjct: 600 EFLTLETGEELICLSTLEEESPGLAIGTLQGVVKRVVPD--YPPNKDEWEIISLKDGDRI 657

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG----------I 697
                +    + +  +  + +LL +   Q+    R   G+                    
Sbjct: 658 VGATQLLTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMTGIKLGADAAVLSFTAVDPA 717

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +D + F +      +D + R++  +  D     G R   G  
Sbjct: 718 ADAVVFTVAGSHGTLDDSERTWKLTPFDQYPRKG-RATGGVR 758


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 217/619 (35%), Positives = 343/619 (55%), Gaps = 23/619 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T     V  + +   ++  Y+ Y++S I  RA+PD+RDG KPVHRRI+++M E G
Sbjct: 1   MEEIQTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L      +K A+IVG+V+G  HPHGD SVYD+LVRL Q F  RYP+I  QGNFG I GD 
Sbjct: 61  LRSSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AAYRYTEA+M ++AE +++ + ++ VDF   +++   EP V P+KFP LLANG+SGIAV
Sbjct: 121 PAAYRYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN++EI +A  A IDNPEI I++L +Y+ GPDFPTGG+ +  R+ I ++++ 
Sbjct: 181 GMATNMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGV-IYGRKGIKQAFKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE- 304
           GRG   VR ++ +E   +G   IV TE+PYQV  + L+ +I EL   K I  + ++ DE 
Sbjct: 240 GRGKILVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDET 299

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R     +++  +F  + +++ F +    L  G  P+ + L  ++K +
Sbjct: 300 SDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNG-RPETLNLKLLVKYF 358

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           + HR +V+ RR+ F ++  + R  IL+ L++A  NIDE+I IIR        K  ++ RF
Sbjct: 359 VEHRVDVVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMERF 418

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
              + Q  AI++++L+ L  LE   ++ EL  L      +  LL   ++    I  E  E
Sbjct: 419 GFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNE 478

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           + E F      G  R T       +     + +I+KE + ++IS+ G+I+          
Sbjct: 479 IAEKF------GDERKTDIVADEVE-ELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQ 531

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
                  ++++  E D L     A T D I+ ++  GKAY L    +   S    G  I+
Sbjct: 532 NRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIK 591

Query: 592 LLIDLNHNQDIVTAFVYDS 610
            L+ ++ +++I        
Sbjct: 592 SLLSVSSDEEITAVVSLKE 610



 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVV 654
           +  +++    +      ++++S  G    +  +   +  R GK    + ++ ++ +  + 
Sbjct: 494 DEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIF 553

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713
              T D++  +    K     + +I E SR         +   I  ++     E +T + 
Sbjct: 554 TASTHDYIMFITNAGKAYWLKVHEIQEASRTS-------RGSHIKSLLSVSSDEEITAVV 606

Query: 714 S 714
           S
Sbjct: 607 S 607


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/746 (31%), Positives = 402/746 (53%), Gaps = 26/746 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+ NV   SL   + +R+  Y+   I+ERA+PD RDG KPV RRI++AM E G  +   +
Sbjct: 6   VKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYNKPY 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSA+ VG VIG  HPHGD SVYD++VR++Q +    PLI  QGN G+ID D AAA RYT
Sbjct: 66  HKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ ++++ +LQ +D+D V++   +++E  EP V P++FPNLL NG +GIA G AT+IP
Sbjct: 126 EARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYATNIP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A++  I +P+ S+E+L++++ GPDFPTGGI++   + I ++++ GRG   +
Sbjct: 186 PHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVM-GLDGIKQAFQTGRGRVLI 244

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  V  + R    I++ EIPY+V KS L++KI E+ + K+I  + D+RDES      +
Sbjct: 245 RSKVEVVPL-RTIKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGLRI 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + + ++  ++  +D++  +  N+  +      Q M L  +L  +++HR +V+
Sbjct: 304 VVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIVNKAPVQ-MSLAMMLDAFISHREDVV 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RRS F ++    R  IL+GL+ A   +DEII IIR        K  ++ RF  TE Q +
Sbjct: 363 IRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIERFDFTEKQAE 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ +RL  L   +  ++K+E   L  +  +++ ++    +    +  E+ +V   F+  
Sbjct: 423 AIVVMRLYRLTNTDVKELKAEFKQLQCDIAELEKIIRDKSELHKVMVEELEKVNAEFNTP 482

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R +       +    ++AMI KE   + ++  G+I+ +   S + S+      K
Sbjct: 483 ------RLSKIVHEVKEIVIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDSMTQRK 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           + DSL     +HT   ++  +  G    +P   +     +  G  I   I ++ ++ I+ 
Sbjct: 537 DTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEKIIA 596

Query: 605 AFVYDSTC---KLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV--TG 658
           A+V D+      ++  S  G     E  E  ++ + K  T +K+   ++M  V       
Sbjct: 597 AYVLDAFKTGVHVVSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEMISVSLSYKPD 656

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
           D V +V E    L++ ++QIP +S + KGV+  +  KD  ++ +   K  +    I +  
Sbjct: 657 DQVILVSEQGYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASICIRKNRDEQVLISTTT 716

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
            S  R +   +  L  R   G+ + K
Sbjct: 717 LSLKRMKQLEIAPL-NRPAKGNRICK 741


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 212/752 (28%), Positives = 379/752 (50%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGGI V+  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGI-VQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   ++  + + ++  +F  +D++  +  NM  +   R   V  L   L+ +L+ R+EV+
Sbjct: 300 VIELSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHV-GLKAGLEAFLSFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR     K       +RF  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINRFEFTQAQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L  +   ++ +++      + I  EI+ + + +S  
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFSQLNDKINCLNQIIHEESALKDVIREEIKAITKAYSSP 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--ALHFKE 547
                 R +  E    +        I +E + V++S  G+ +     S   S       E
Sbjct: 479 ------RRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +TT+ + + +  G     P   L     +  GE   Q L + + ++ ++ 
Sbjct: 533 DDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIK 592

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---- 657
           A   D+  +     +VS+ G        +I+    K K+ + +  ++ +  VV V     
Sbjct: 593 AIAVDNLEQGGAFTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQN 652

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
               +V ++  N   L ++I ++PE+  R  GV+    +D        F   +  +    
Sbjct: 653 VKRQNVLLLSHNGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +     L    KRG  G L+     +
Sbjct: 713 AENGAFKYMPVSLINHSKRGNKGVLIF--TQK 742


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/788 (29%), Positives = 396/788 (50%), Gaps = 66/788 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 13  IIPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 137 TQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + +  + +L  + E  VDF   ++    EPVV P++ PNLL NG +GIAVGMAT+IP HN
Sbjct: 133 SPIADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LIDNPE+S EKL + I GPDFPTGG I+ S + I E+YR G+G   VR  
Sbjct: 193 LGEVVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINS-QGIEEAYRHGKGIIPVRGV 251

Query: 256 WCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             ++ +  G         I+VTE+PYQV KS  IEKIA+L+   R+  + DIRDES    
Sbjct: 252 VKIQRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRTG 311

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R      +++ ++  + ++  F   M  L   + P  + L  +L+E+L  R 
Sbjct: 312 MRVVIELKRDAVAKTVLKELYKKTALQQNFGAIMLALLDNQ-PCQLSLRQLLEEFLKFRE 370

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           + L R+ +  +Q    R+ +L+GLLI+  ++D  I I+R+       K       +L+E 
Sbjct: 371 DTLTRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAKVQFQRDLNLSEA 430

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL + +R L  LE  ++++E D L  +  ++++LLN+  +    +  E+R +K  +
Sbjct: 431 QANAILAMPMRRLTGLERQKLQAESDELEGKINELETLLNNRPEFLKVLKKELRSLKRKY 490

Query: 487 SKSTDLGRRRTTFCEVSRADKAT--------------------------------LQQAM 514
                   RRT   + +    ++                                L    
Sbjct: 491 GD-----TRRTRIVQATAQKSSSTTTSTSQRKSTNKDKVESKSNQQTETVTQPFNLFTPQ 545

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
              +   + ++ +G I                +      +      ++ ++++  GKAY 
Sbjct: 546 TPPKNAILEMTYQGTICWRSPDD------KIPDNHLPIYSEPIQEREQFVVITDIGKAYP 599

Query: 575 LPAGNLLSGRGHGEAIQLLIDL---NHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEE 628
           +   ++        ++  L+       ++ +++AF          LL+++++G    ++ 
Sbjct: 600 VNVADVPPIDIQPISLLSLLPKSAQRDSKKVISAFFVLENKENHDLLLLTNQGKIKRIQL 659

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS-IDQIP-EMSR-G 684
           SE+   T +G   +K+   + ++ +     G+ VA+   + ++L F  +D++   M R  
Sbjct: 660 SELDGLTNRGLVLIKLKDNDYLEFISPTKEGEEVAIAMSSGRVLRFPVVDEVIHIMGRNA 719

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +G +    + G    + C  + E  T +  +   Y +  N     + K G +G+   +  
Sbjct: 720 QGNQALKLRYGENI-ISCVTLDENKTVLLVSKLGYAKRLNITGLRMTKLGDIGTQALQFA 778

Query: 745 PRSGKFLS 752
            ++   L 
Sbjct: 779 QKTDSLLG 786


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 214/755 (28%), Positives = 394/755 (52%), Gaps = 32/755 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR   ++   K  +++++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTTNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                G  R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 479 -----GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVIRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   + + + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKEEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 IDSA----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I         ++ + + +L+  +  R   G LV +
Sbjct: 714 IKVGIITQRGAFKQLKLNLINKIT-RAKRGVLVLR 747


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 313/732 (42%), Positives = 458/732 (62%), Gaps = 14/732 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +N+    L+    ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L   + F
Sbjct: 1   MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F   YPL++GQGNFGN+DGD+AAA RYT
Sbjct: 61  KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+ +E +L  ++E+ V+F+ TY+ E  EP + PS+FPN+LANG+SGIAVGMATSIP
Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HNVQEICEA + L DNP  SI+ LL++I GPDFPTGGI+ E ++ I ++Y+ GRG F +
Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           ++++ VE++GRG + I VTEIPY V KS+LIEK+A +II K+  LL+ + DES E +RIV
Sbjct: 241 KSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEKIRIV 300

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           L PKNR+++P+ LM S+F  S+++ +  LNMNVL+    P+VM L  ILK  L HR  +L
Sbjct: 301 LRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIIL 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             + +F+++ I RR+EILKG +I Y N+++II IIRN   PK  ++ ++  T  QVD+IL
Sbjct: 361 NNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVDSIL 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR+L+K+EE  IK E  NL  EK+++  +LNS   Q  +I  E  EV   F  ++  
Sbjct: 421 EMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTY 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
           G RR+   +  +     L+  +   E I V + N  +++S K  +   S    K  D + 
Sbjct: 481 GPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKS-KKGTYKRSE---KNSDDVS 536

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
           + ++  T+D+I LLS  GK+Y L   NL  G   G  I   + L   + IV  FVY    
Sbjct: 537 LIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYKEKQ 596

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENR- 668
           ++++ S  G  F V+  ++  N + GK    +   ++      +  +    + +  ++  
Sbjct: 597 EIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNL 656

Query: 669 --KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             KL+IF + ++P + +G GV L   K   +++         L  IDS          +L
Sbjct: 657 KYKLIIFELKEVPYLQKGSGVILFKTKGFKLNNFCSIDDNLSLIDIDSKKIELG----NL 712

Query: 727 LGWLGKRGGVGS 738
             +L KRG  G 
Sbjct: 713 KSFLSKRGKSGK 724


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/762 (31%), Positives = 386/762 (50%), Gaps = 43/762 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M EMGL  
Sbjct: 11  PDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMGEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              F K AR+VGEV+GKLHPHGD S+YD++VR+AQPF  R PL+ G GNFG++  D   A
Sbjct: 71  DRGFVKCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RM   A L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAVGM
Sbjct: 131 AMRYTESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGG-RIVGLSGIKDAYESGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      IVVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GSFKIRATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +    ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 NHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFEVVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L K +  ++++E + L  E +++  +L S  +    ++ E+  V 
Sbjct: 429 SEIQTQYILDTPLRRLTKFDRIELETEQNRLNGEIDELTGILESDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS---VDL 540
           + F+       RRT   E S           +  +P  V++S+ G +    +     VD 
Sbjct: 489 KKFAT-----DRRTVLLE-SAGAPVAAVSLEVADDPCRVLLSSTGLLARTATAELPPVDP 542

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQL 592
            A   K  D +  ++ A     I  +++ G+   +   +L              G  +  
Sbjct: 543 DAARAKH-DVILSSVAATQRGDIGAVTSGGRLLRIAVIDLPQLPDTASAPNLAGGAPLSE 601

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L  ++ +V     D     L + + +G    V   +  AN +     + +   +++ 
Sbjct: 602 FLSLEADETVVCLTTLDEASPGLALGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRIV 659

Query: 652 LV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKD-------GGIS 698
               ++   + +  +  + +LL +   Q+    R      GV+L +  D          +
Sbjct: 660 GATELRTGDEDLVFITSDAQLLRYPAAQVRPQGRPAGGMAGVKLSAGADVISFTAVDPAA 719

Query: 699 DVICFKICEGLTWID-SAGRSYNRSENDLLGWLGKRGGVGSL 739
           D + F +      +D SA  S   +  D     G R   G  
Sbjct: 720 DAVVFTVAGSTGTLDGSAATSAKLTPFDQYPRKG-RATGGVR 760


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 214/755 (28%), Positives = 392/755 (51%), Gaps = 32/755 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR   ++   K  +++++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAKYDFTPNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                G  R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 479 -----GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   +   + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 IDSA----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I         ++ + +  L+  +  R   G LV +
Sbjct: 714 IKIGIITQRGAFKQLKLSLINKVT-RAKRGVLVLR 747


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 226/720 (31%), Positives = 367/720 (50%), Gaps = 27/720 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V +   +   +L YA S I  RA+PD RDG KPV RRI+ +M+E  +       
Sbjct: 15  EERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAENNIRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VGEV+GK HPHGD ++YD+LVR AQP+  R PLI G GNFG++D D  AA RYTE
Sbjct: 75  KSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-DGPAAMRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            RM   A  +  G+DE+ VDF+  Y+ ++ EP V P+ FPNLL NG +GIAVGMAT++  
Sbjct: 134 CRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIAVGMATNMAP 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A   LI +P+  ++ L+ ++ GPD PTGG IV   E I ++Y  GRG F++R
Sbjct: 194 HNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIV-GLEGIKDAYATGRGSFKMR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A   +E V      IVVTE+PY V   ++IEKI  L+ AK++  + D++D +       +
Sbjct: 253 ATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDLTDRSHGTRL 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +        P+ L+E ++ L+ +E  F +N   L  G+ P+ + L  +L  +L HR +V 
Sbjct: 313 VIEVKNGFVPEALLEQLYKLTPLEDSFSINAVCLVDGQ-PRTLGLRELLDVYLEHRYDVT 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429
            RRS FR +    R+ I+ GLLIA L+IDE+I IIR+ D     +  ++  + L+E Q +
Sbjct: 372 RRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTRLIDIYDLSEVQAN 431

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL++ LR L K  + ++++E   L  E EK+ ++L         ++ E+ +V + +   
Sbjct: 432 YILDMPLRRLTKFSKLELETEKAELEREIEKLTAILEDEALLRKIVSEELADVAKTYGTP 491

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT   E S A K       +  +P  V++S+ G +                + D
Sbjct: 492 -----RRTVLLESSGAAKTAAVPLEVTDDPCWVLMSSAGLLARTNGVEPFGDGEGRAKHD 546

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS----GRGH----GEAIQLLIDLNHNQD 601
           ++  A+ +    +  L+++ G+   L + +L +            G  I   ++L   + 
Sbjct: 547 AIVSAVKSTARGQYGLITSAGRLIRLESLDLPAVPTTANAPNLQGGAPIAEFVELEAGER 606

Query: 602 IVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTGD 659
            +     D     + + ++ G    V    +  + R     ++++  +++   V   TG+
Sbjct: 607 ALALTTMDPESVGVALGTATGVVKRVVPDHL--SNRDSWEIIRLADGDRVVGAVELATGE 664

Query: 660 HVAV-VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG-GISDVICFKICEGLTWIDSAG 716
                +  + +LL F+   +    R   G+       G  +              +  AG
Sbjct: 665 EELCFIASDAQLLHFNASVVRPQGRTAGGMAGIRLSAGAKVVFFGAVDPARESHVVTVAG 724


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/738 (33%), Positives = 386/738 (52%), Gaps = 35/738 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PDL+DG KPVHRRII+AM+++G+      KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++VR+AQ F  RYPLI G GNFG+IDGD AAA RYTEAR+ +++  +++ +D D V F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
            D Y+  + EP       PNLL NGT GIAVGMATSIP HN++E+  A  A IDN +I+I
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 215 EKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           +++L+ +I+GPDFPTG ++    + + E Y+ GRG   +RA+   EE  +     VVTEI
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAKIDFEE-NKKHDRFVVTEI 238

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQ  K+++IEKIAEL+  K I  + DIRDES  +   ++    +  +PD+++  ++  +
Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYT 298

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +++ F +N+  L+      +  L  I+K ++  +  V+ +RS F    + +R  IL+ L
Sbjct: 299 ALQSSFSINLLTLNNNLPVLLD-LKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEAL 357

Query: 394 LIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            IA  N+D++I II+N    ++ K  + ++++  E Q  AIL++RL+ L  LE  +I  E
Sbjct: 358 HIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLE 417

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           + N+      +D L+N+ ++Q N +  ++ E+ + F        RRT   +         
Sbjct: 418 MTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGD-----NRRTELIDEEL--INIE 470

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE-------GDSLKIALHAHTTDRI 563
            + +I      +++S  G+IR +      +     +         D + IA      D +
Sbjct: 471 DEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDWV 530

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHNQDIVTAFVYDSTC----KLLV 616
           L  +  GK Y     N+   S    G  I   ++ L     I       +       L  
Sbjct: 531 LFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFNYLTF 590

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
           V+ KG     + SE     R GK  + +   +++  V   TG D + +  E+ K++    
Sbjct: 591 VTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKE 650

Query: 676 DQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             +   SR G GVR    +  D  +  +  FK+         + +   +        +  
Sbjct: 651 SVVNPQSRVGSGVRALKLETNDVVVGAISSFKLTH---ITTVSNKGLFKKTPIDDYRISG 707

Query: 733 RGGVGSLVPKGFPRSGKF 750
           R G G  V     R+GKF
Sbjct: 708 RNGKGIKVMNLNQRTGKF 725



 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            EK      ++ +G I+  K             A++ +E D L         D I + + 
Sbjct: 582 KEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANE 641

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            GK   +    +      G  ++ L  L  N  +V A        +  VS+KG       
Sbjct: 642 SGKVIRIKESVVNPQSRVGSGVRAL-KLETNDVVVGAISSFKLTHITTVSNKGLFKKTPI 700

Query: 629 SEIIANTRKGKTFLKVSSEEKM----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
            +   + R GK    ++  ++      ++     D + ++  +  L+   +  IP +SR 
Sbjct: 701 DDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRN 760

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+     D    + I  +
Sbjct: 761 ASGVKAIRLADNQEINAITLE 781



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 2/182 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     VS           I  E   V+      +     
Sbjct: 599 RTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNPQSR 658

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  +  D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 659 VGSGVRALKLETNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 718

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLV 653
                          T  +L++SS GN    + S I + +R   G   ++++  +++  +
Sbjct: 719 NQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAI 778

Query: 654 VK 655
             
Sbjct: 779 TL 780


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 258/767 (33%), Positives = 410/767 (53%), Gaps = 39/767 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 26  GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 85

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 86  KRLGLNPDVKTVKSARVVGEVLGKYHPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 145

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 146 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 205

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 206 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 265

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----------- 290
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L            
Sbjct: 266 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 325

Query: 291 -------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + ++  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 326 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 385

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 386 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 445

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 446 EVIRIIRGTDDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 505

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +      G  R T  E ++      Q      EP+T
Sbjct: 506 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIEEAKGASIAKQVI---DEPVT 556

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 557 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 616

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S RG G  +   +                   LL  S     F  + S++    R GK+F
Sbjct: 617 SARGEGTHVSAFVQFQDGDVPFDYICGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 676

Query: 642 LKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             +    K   V   T     +A +  + +L++F+ D++  +S  GKG  + + +D    
Sbjct: 677 FIL-DGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQDDE-K 734

Query: 699 DVICFKICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLV 740
            V    I      +   GR     E       +  +  +RG  G  V
Sbjct: 735 LVAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGRFV 781


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/765 (31%), Positives = 391/765 (51%), Gaps = 44/765 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG+SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI  P   +E L++++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGG-RIVGLTGIRDAYES 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEVQTQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDAELRKLVSGELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S    A      +  +P  V++S+ G + R+        
Sbjct: 486 VAKKFGT-----DRRTVLLE-SAGSTAATVPLQVADDPCRVLLSSTGLLARTANGAPFGE 539

Query: 541 SALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQ 591
            A   + + D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 DADGRRTKHDVIVSAVPATARGEVGAVTSSGRLLRLNVIDLPRLPETTSAPNLSGGAPIS 599

Query: 592 LLI-DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKG-KTFLKVSSEE 648
             +  L  ++ +V     D +   L + + +G    V   +  +N  KG    + +   +
Sbjct: 600 EFLSSLEGDETVVCLTTLDESSPGLALGTEQGVVKRV-VPDYPSN--KGELEVITLKDGD 656

Query: 649 KMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG--------- 696
           ++   ++++   + +  + ++ +LL +   Q+    R   G+      DG          
Sbjct: 657 RIVGAIELSTGEEDLVFITDDAQLLRYQASQVRPQGRAAGGMAGIKLTDGAKVISFTAVD 716

Query: 697 -ISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSL 739
             +D + F +      +D + ++    +  D     G R   G  
Sbjct: 717 PAADAVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 760


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 175/648 (27%), Positives = 306/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN+ E+ +A    ++N +   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-S 305
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S
Sbjct: 669  RGSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGS 728

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 729  DRVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT        D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGD-----DRRTRII---AVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V    D  + +V  N + + FS     +  M R   GV+   +        +    
Sbjct: 1080 LVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVR 1139

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + ++G  Y +  +     +  RGG G L      R G  + +
Sbjct: 1140 EDTYLLVATSG-GYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 83/132 (62%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY  +
Sbjct: 122 NDPPAAMRYCVS 133



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 14/227 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +       +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREDT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V        +   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             ++  +  Q+ +  R  KGVRL +  +G     I     E    +  
Sbjct: 1203 GVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSV 1249



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 530  IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 1111 LRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKG 1170

Query: 590  IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
            +  ++       +V A V D   +L  ++S G        ++    R  KG   + +   
Sbjct: 1171 VLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEG 1230

Query: 648  EKMKLVVK-----VTGDHVAVVGENRKLLIF 673
            + +  + +       G  V V+    ++L F
Sbjct: 1231 DTLLAIARNAEESADGVSVKVMISRSRVLSF 1261


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 175/648 (27%), Positives = 306/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN+ E+ +A    ++N +   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-S 305
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S
Sbjct: 669  RGSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGS 728

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 729  DRVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT        D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGD-----DRRTRII---AVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V    D  + +V  N + + FS     +  M R   GV+   +        +    
Sbjct: 1080 LVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVR 1139

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + ++G  Y +  +     +  RGG G L      R G  + +
Sbjct: 1140 EDTYLLVATSG-GYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 83/132 (62%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY  +
Sbjct: 122 NDPPAAMRYCVS 133



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 14/227 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +       +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREDT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V        +   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             ++  +  Q+ +  R  KGVRL +  +G     I     E    +  
Sbjct: 1203 GVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSV 1249



 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 530  IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
            +R +   +  +  + F   D L           +L+ ++ G A              G+ 
Sbjct: 1111 LRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKG 1170

Query: 590  IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE 647
            +  ++       +V A V D   +L  ++S G        ++    R  KG   + +   
Sbjct: 1171 VLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEG 1230

Query: 648  EKMKLVVK-----VTGDHVAVVGENRKLLIF 673
            + +  + +       G  V V+    ++L F
Sbjct: 1231 DTLLAIARNAEESADGVSVKVMISRSRVLSF 1261


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 175/648 (27%), Positives = 306/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN+ E+ +A    ++N +   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-S 305
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S
Sbjct: 669  RGSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGS 728

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 729  DRVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT        D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGD-----DRRTRII---AVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V    D  + +V  N + + FS     +  M R   GV+   +        +    
Sbjct: 1080 LVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVR 1139

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + ++G  Y +  +     +  RGG G L      R G  + +
Sbjct: 1140 EDTYLLVATSG-GYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 83/132 (62%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY  +
Sbjct: 122 NDPPAAMRYCVS 133



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 14/222 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +       +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREDT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V        +   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             ++  +  Q+ +  R  KGVRL +  +G     I     E  
Sbjct: 1203 GVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESA 1244


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 253/700 (36%), Positives = 383/700 (54%), Gaps = 33/700 (4%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S +  RAIP L DG KPV RRI++AM +MGL       KSAR+VGEVIGK HPHGD SV
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQ F  RYP++ GQGNFG++DGDSAAA RYTEA +T ++EL+L  +DE  VDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           R  Y+    EPV  P++ P LL NG SGIAVGMAT IP HN++E+ +    L+  P+++ 
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           +++L+ I GPDFP GG I+ +   I E+Y  GRG  RVRARW VE++ RG W I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 275 YQVQKSRLIEKIAEL--------------------IIAKRIPLLEDIRDES--AEDVRIV 312
             V  ++++ +I  L                         +  ++ +RDES  A  VRIV
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           + P++R+ DP  LM  +   + +E+   +N+ VL +      MPL  IL++W+ +R   +
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAPCMPLTRILRQWVRYRVTTV 440

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            RRS FR+     R+ IL+G L   L+ID +I +IR  D PK  +++ F L+E Q + IL
Sbjct: 441 RRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKADLMTHFDLSEIQAEDIL 500

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RLR L +L   +++ EL +       + +LL    +    IA EI+   + F      
Sbjct: 501 EIRLRQLARLAGIELERELADKQETAAYLSALLQDESRLRALIAEEIQADAKKF------ 554

Query: 493 GRRRTTFCEVSRADKATLQQAMIE---KEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
           G  R T  E   A      Q +      EP+TV++S +GW+R+   H +D + L FKEGD
Sbjct: 555 GDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQKGWLRTRSGHGLDTATLGFKEGD 614

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
           +L  A    + D ++LL   G+AY++    +  GRG G  +   +D      + +     
Sbjct: 615 ALLQAFEVRSVDTLVLLDHSGRAYSIAVAQIPGGRGDGIPVSSQVDFQPGGVLASVACGA 674

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGEN 667
                LV  + G  F+     +    R GK FL +  +E+   +++VT        +  +
Sbjct: 675 GDSLWLVAGTGGYGFLTTLENMTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSSD 734

Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICE 707
            + L+F +  +  + +GKGV+L +         +   + +
Sbjct: 735 GRGLLFPLVDVKNLPKGKGVKLIALGASATLQSLSVYLDD 774


>gi|15826871|ref|NP_301134.1| DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 175/648 (27%), Positives = 306/648 (47%), Gaps = 36/648 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP+V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 191  IPSHNVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            IP HN+ E+ +A    ++N +   E     ++E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGS-QGIADAYKTG 668

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-S 305
            RG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   R+  + ++ D+ S
Sbjct: 669  RGSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGS 728

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD ++  ++
Sbjct: 729  DRVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMICYYV 787

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+I +IR     D  +  +V    
Sbjct: 788  EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + + Q  AIL+++LR L  LE  +I  +L  +  E   +  +L   +++   I  E+ E+
Sbjct: 848  IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             E +        RRT        D     + +I +E + V I+  G+         RS K
Sbjct: 908  AEKYGD-----DRRTRII---AVDGDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQK 959

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D ++      T D IL  +T G+ Y   A  L   S    G+ +  
Sbjct: 960  RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 1019

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G     + ++  +N   G   + +   ++
Sbjct: 1020 LLAFQPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDE 1079

Query: 650  MKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V    D  + +V  N + + FS     +  M R   GV+   +        +    
Sbjct: 1080 LVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVR 1139

Query: 706  CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +    + ++G  Y +  +     +  RGG G L      R G  + +
Sbjct: 1140 EDTYLLVATSG-GYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGA 1186



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 83/132 (62%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + V+ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAML 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEA 134
            D  AA RY  +
Sbjct: 122 NDPPAAMRYCVS 133



 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 14/222 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  K    D +      A++ ++ D L  A
Sbjct: 1024 QPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1083

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +       +LL+S +G++    A +  + R  G A   +  +  N +  +++  V     
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREDT 1142

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHVA-VVGENR 668
             LLV +S G A      E     R GK  L V        +   + V  D     +    
Sbjct: 1143 YLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITSGG 1202

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
             ++  +  Q+ +  R  KGVRL +  +G     I     E  
Sbjct: 1203 GVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESA 1244


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/711 (33%), Positives = 384/711 (54%), Gaps = 29/711 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EEN+  V +   +   +L YA S I  RA+PD RDG KPV RRI+++M+EMGL       
Sbjct: 16  EENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRGHV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD ++YD++VR+AQP+  R PL+ G GNFG++ GD   AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++  A L++  +DE+ VDFR  Y+ ++ EP V P+ FPNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+++P+ ++E+L++++ GPD PTGGIIV   E I ++Y  GRG FR+
Sbjct: 196 PHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIV-GLEGIRDAYAKGRGTFRM 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   R+I KI +L+ AK++  + D++D +       
Sbjct: 255 RATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGLR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P+ ++  ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++ HR EV
Sbjct: 315 LVIEVKNGFNPEAVLAELYRLTPMEETFGINNVALVDGQ-PRTLGLRELLQVYVDHRLEV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A LNIDE+IAIIR+ D     K  ++  F L+E Q 
Sbjct: 374 VRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLMETFELSEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++ E + L  E  ++ ++L S ++    +A E+ EV + FS 
Sbjct: 434 QYILDTPLRRLTRFDRLELEKESEQLGKEIARLTAILESDRKLRKLVAKELGEVAKKFST 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT   E S    A +   +   EP  V++S+ G +          +       
Sbjct: 494 P-----RRTVLLESSGQTAAAVPLEV-PDEPCLVLLSSTGLLARTAGPGPLPAESGSGPH 547

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYT--------LPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           D L   + A T   + L+++ G+           LP G+       G  I     L   +
Sbjct: 548 DVLAAVVRATTRGEVGLVTSAGRMIKVEVLDLPALPPGDGPPSLAGGAPISEYTTLADGE 607

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +V           L + + +G    V   +  AN R+    + +   +++   V++  D
Sbjct: 608 RVVGLGSLTGHGPGLALGTEQGVVKRV-VPDYPAN-REEFEVISLKDGDRVVGAVELASD 665

Query: 660 --HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              +  +  + +LL ++   +    R   G+      +G  + VI F   +
Sbjct: 666 EHDLVFITSDAQLLRYAAANVRPQGRAAAGMAGIKLSEG--ARVIWFGTVD 714


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 210/750 (28%), Positives = 376/750 (50%), Gaps = 28/750 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM +    +   ++K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRK 62

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYTEA
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++EI  A + L+D+P  ++ +L+ Y+ GPDFPTGGI V+  + I ++Y+ GRG   VRA
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGI-VQGLDGIKKAYKTGRGKIVVRA 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + ++  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   ++ 
Sbjct: 242 KTEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
             ++  + + ++  +F  +D++  +  NM  +   R   V  L   L+ +L+ R+EV+ +
Sbjct: 302 ELSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHV-GLKAGLEAFLSFRKEVVLK 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAI 431
           RS++ +     R  I++GL+     +DE++A IR     K       + F  T+ Q +AI
Sbjct: 361 RSAYELTKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINHFEFTQAQAEAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +  Q++ E   L  +  +++ +++      + I  EI+ + + +S    
Sbjct: 421 VTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHEESALKDVIREEIKAITKAYSSP-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--ALHFKEGD 549
               R +  E    +        I +E + V++S  G+ +     S   S       E D
Sbjct: 479 ----RRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAEDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVTAF 606
            +      +TT+ + + +  G     P   L     +  GE   Q L + + ++ ++ A 
Sbjct: 535 LVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIKAI 594

Query: 607 VYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT------ 657
             D+  +     +VS+ G        +I+    K K+ + +  ++ +  VV V       
Sbjct: 595 AVDNLEQGGAFTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVK 654

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
             +V ++      L ++I ++PE+  R  GV+    +D        F   +  +    A 
Sbjct: 655 RQNVLLLSHKGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIVAE 714

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
               +     L    KRG  G LV     +
Sbjct: 715 NGAFKYMPVSLINHSKRGNKGVLVF--TQK 742


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/750 (29%), Positives = 393/750 (52%), Gaps = 31/750 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G     AF+KS
Sbjct: 4   DIQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYTEAR
Sbjct: 64  AKTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ +L+ +++D VD    +++ + EPVV P+ FPNLL NG+ GI+ G AT IP+HN
Sbjct: 124 LSKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A    ID+P+  +E L++Y+ GPDFPTGGI ++ ++ ++++Y+ GRG   VRA+
Sbjct: 184 LGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGI-IQGKDQLIKAYKTGRGKVVVRAQ 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE +  G   IV+TE+P++V K+ L+ K+ EL + + I  + ++RDES      ++  
Sbjct: 243 TEVESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVE 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D D +++  F  ++++  +  NM  ++  R  QV  L  I++ ++ HR++V+ RR
Sbjct: 303 LKKDADADQILQYYFKHTNLQINYNFNMVAINKQRPEQV-GLIAIIQAYIDHRKDVVSRR 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + +     R  I+ GL+ A   +D++I IIRN       K  ++S +  ++ Q +AI+
Sbjct: 362 TQYDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISEYQFSQAQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E  +L     +  ++L+        I  E++ +K+ ++     
Sbjct: 422 TLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDETILMKLIQSELKAIKKAYATD--- 478

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGD 549
              R T  E    +    ++ +I  E +  V++  G+I+     S   S    L  ++GD
Sbjct: 479 ---RLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSSLRSYQSSNFADLGLRDGD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
            +       T D ++L++  G     P   +     +  GE +   I +  ++ I+  + 
Sbjct: 536 HVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWKDLGEHLSQRIPIASDEKIIQVYP 595

Query: 608 Y--DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSE-EKMKLVVKVTGD-- 659
           Y  DS   +++ + +G     + SE+        K    + +SS  +++     V     
Sbjct: 596 YAKDSQDTIVLATREGMIKQSKLSELKKIRGHKNKASQIMPLSSPLDEVVNCYLVNNQSD 655

Query: 660 ----HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--ISDVICFKICEGLTWI 712
                V +       L + I +I  +  R KGV   + KD    ++ V   ++ E    +
Sbjct: 656 KQNGEVILFTALGFSLRYQISEINTVGLRAKGVISINLKDQDQVVNFVYQDQVDEDQQIL 715

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +  R Y +           R   G +V +
Sbjct: 716 LATQRGYMKRMRWRDIQTMTRAKRGLMVLR 745



 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 152/459 (33%), Gaps = 53/459 (11%)

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------IIAKRIPLLEDIRDESAEDV 309
             ++        +V     Y + K++    I +       I+ + I ++ +  D+     
Sbjct: 345 AIIQAYIDHRKDVVSRRTQYDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKN 404

Query: 310 RIVLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMGRVPQV---MPLDGILKEWL 365
            ++   +      + ++   ++ L++ +        +     + Q    +  + IL + +
Sbjct: 405 NLISEYQFSQAQAEAIVTLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDETILMKLI 464

Query: 366 AHR-REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
               + +    ++ R+  I+  VE +K +   +L  DE +  +      +   + R SL 
Sbjct: 465 QSELKAIKKAYATDRLTKIEAEVEEIK-IKKEFLIPDEEVVTVVT----RGGYIKRSSLR 519

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q     +L LR                  +  + +  + N G   +  +  E++E++ 
Sbjct: 520 SYQSSNFADLGLR-------DGDHVLYLAAHSTLDNLVLITNKGNYIFQPV-YEMQELR- 570

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSVD-LSA 542
                 DLG   +    ++  +K        +    T+V+ +  G I+  K   +  +  
Sbjct: 571 ----WKDLGEHLSQRIPIASDEKIIQVYPYAKDSQDTIVLATREGMIKQSKLSELKKIRG 626

Query: 543 LHFKEG---------DSLKIALHAHT-----TDRILLLSTDGKA--YTLPAGNLLSGRGH 586
              K           D +      +         ++L +  G +  Y +   N +  R  
Sbjct: 627 HKNKASQIMPLSSPLDEVVNCYLVNNQSDKQNGEVILFTALGFSLRYQISEINTVGLRAK 686

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G     L D +   + V     D   ++L+ + +G    +   +I   TR  +  + +  
Sbjct: 687 GVISINLKDQDQVVNFVYQDQVDEDQQILLATQRGYMKRMRWRDIQTMTRAKRGLMVLRE 746

Query: 647 ----EEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIP 679
                 ++   ++V        +   N +L       +P
Sbjct: 747 VKSKPHRLVQALEVESTQEVYELYTSNGELSQIKAVDVP 785


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/768 (32%), Positives = 401/768 (52%), Gaps = 56/768 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
            + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM + + L      +KS
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA+
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +AAL +I+ PE+    L+ ++I GPDFPTGG I+ +++ + E Y  G G   +R 
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL 
Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQVMPLDGILKEWLAHRR 369
            K R  D +  M  +F  + ++ RF +N+  L        + P+ + L  IL+ +L  R 
Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR    +  ++ R+ IL+G    +  +DE I IIR   N+      ++ RF L E 
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L ++E   I+ EL    A  E+I  LL+    +W  +  E++++++ +
Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEEIRRLLDDEDARWGIVKDELQDIRDEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +      AD    ++  I  E + V+++  GW++   ++S DL A+  +
Sbjct: 479 TDE------RRSTLVGPEADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V   
Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591

Query: 607 VYDS---------------------------TCKLLVVSSKGNAFIVEES-EIIANTRKG 638
            +D                               ++ +S  G A        +  +   G
Sbjct: 592 SFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG 696
           + ++++   +++  V    GD  + +   + + L+F + Q+       KGVR    +D  
Sbjct: 652 RKYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDND 711

Query: 697 --ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +   +  +  +GLT   + GR               RG  G+LV K
Sbjct: 712 RVLDFALSTRARDGLTVETNNGREEIVRTTKFDA--TNRGAKGTLVIK 757



 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +  G++    S S     +  ++GD +     A   + I L S DG+A   P   +   
Sbjct: 638 FTLDGYLE--PSISTGRKYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVY 695

Query: 584 RGHGEAIQLLIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +G  + ++  I L  N  ++  A    +   L V ++ G   IV  ++  A  R  K  L
Sbjct: 696 KGPAKGVRA-IRLEDNDRVLDFALSTRARDGLTVETNNGREEIVRTTKFDATNRGAKGTL 754

Query: 643 KVSSE 647
            +   
Sbjct: 755 VIKRG 759


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 388/761 (50%), Gaps = 43/761 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE+RMT+   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLPGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GSFKIRATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFNVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L  E E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDIQTQYILDTPLRRLTKFDRIELEAEKDRLNEEIEELTRILDSDAELRKLVSAELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F      G  R T    S    A +    +  +P  V++S  G +    + +      
Sbjct: 489 KKF------GNDRRTLLLESAGTPAAVVPLQVADDPCRVLLSATGLLARTVNDAPLADDG 542

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLLID 595
              + D +  +  A     I ++++ G+   L   +L              G  +   + 
Sbjct: 543 KRVKHDVIVSSAPATARGEIGVVTSAGRLLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVS 602

Query: 596 LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L  ++ +V     D +   L + + +G    V       + ++    + +   +++   V
Sbjct: 603 LEDDEQVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAV 660

Query: 655 KV-TGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK----ICE 707
           ++ TGD   V + ++ +LL +   Q+    R   G+      +G  + VICF       +
Sbjct: 661 ELRTGDEDLVFITDDAQLLRYPAAQVRPQGRPAGGMAGVKVTEG--AKVICFTAVDPAVD 718

Query: 708 GLTWIDSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
            + +  +  R             +  D     G R   G  
Sbjct: 719 AMVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 758


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 384/752 (51%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+  P+ S+E L++Y+ GPDFPTG I++   + I E+YR GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKYPDASLEDLMKYVKGPDFPTGAIVM-GTKGIKEAYRTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFANP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S   +        
Sbjct: 481 ------RRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKVT 657
            FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  + 
Sbjct: 595 VFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLIK 654

Query: 658 GD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
            D    + +       + + + +IP    +  GV+  + KD            + +  + 
Sbjct: 655 SDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 746


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 253/754 (33%), Positives = 409/754 (54%), Gaps = 32/754 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI++A  E+GL    A 
Sbjct: 1   MSEEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD+LVR+AQ F QRY LI G GNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T+VAE +L+ +DE+ V FRD ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A L L++ P   ++ +++ ++ GPDFPTG   +   E I  +Y  G+G   
Sbjct: 181 PHNLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGA-SIVGNEGIKSAYENGKGKII 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E+ GR    I++TEIPYQ+ KS+LIE+IAEL+   ++  + D+RDES +D   
Sbjct: 240 LRAKSKIEKEGRHKN-IIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +L       DP+L +  ++  + M++ F +N+  L   + P+VM L  IL  ++  R+EV
Sbjct: 299 ILIALKSGADPELTLNRLYKYTSMQSSFRINLLALDNKK-PKVMGLLEILNHFIEFRKEV 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           +   + + +   + R  IL+GL IA   +D +I IIRN +   + K  +V + +++E Q 
Sbjct: 358 IKNHTKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQLNISEVQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL ++L+ L  +E  ++++E   L A+ ++   +L   K     +  E++E+K+ F+ 
Sbjct: 418 QSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEEKTLKEYLKNELKEMKDKFAD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRTT  E         +Q +I+++   V +S RG I+     + + S L   + 
Sbjct: 478 K-----RRTTIIEDDEKA-EINKQDLIKEKEAVVSLSYRGIIK----RNEEYSNLRAAKN 527

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L   +   + D++L  S  G+ Y L    L    G   G+ +   + L   ++I++  
Sbjct: 528 DYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHGLATGDNLSKYMQLPLEENIISLN 587

Query: 607 VYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
           +     K     + V+  G        E   N       +K+   +K+  V K    D +
Sbjct: 588 ILSKKNKQNNFYVFVTESGQIKRTAAKEYETN-YSHIRAIKL-DNDKLINVEKAEEKDQI 645

Query: 662 AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSY 719
            ++ +N   + F         R   G +     K+  ++    F   + L  +   GR+ 
Sbjct: 646 MIISQNGYAIRFKGKSFSSTGRNTMGSKAIKLAKNDKVTAFSIFNKNKYLVSVTETGRAN 705

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +     L KR G G  +     ++ K   +
Sbjct: 706 KIKLS--QFRLQKRNGRGQRIF--SNQNYKLAGA 735


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/745 (32%), Positives = 399/745 (53%), Gaps = 42/745 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D + +++ ++  + +E  FP+N+ VL   + P+V+ L  +L+E++ HR E++ R
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQ-PRVLNLKELLQEFIKHRIEIITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL+ A  N D++I I+R+       + ++ S+F+L+E Q +AI
Sbjct: 361 RTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARELLTSQFNLSETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L  + E+   +L+S  ++      E  E+   +     
Sbjct: 421 LDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSDDEKIKVFIEETDELVRKYGD--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------- 542
             +R+TT            ++ +  KE     I N G I + K       A         
Sbjct: 478 --QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIINS 526

Query: 543 --LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             +   EG+ +        +  I   + DGKAY     +L  G          +++   +
Sbjct: 527 LSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK-------LNIE-GE 578

Query: 601 DIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTG 658
            + TA+  +    ++ +++ KG    + + +I   + +G   + ++  +++ + V     
Sbjct: 579 IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKS-QGHMVMPLNEGDELVVAVADRHP 637

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            ++ +  +N  LL+F  +++     + KGV      D        F +      + S   
Sbjct: 638 SYIGIYTKNADLLLFERNEVRITGDKAKGVEAIDL-DENDEVAGAFFLNGHEYLLVSTSF 696

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
            Y +        + KR   G +  K
Sbjct: 697 GYMKHVEKTEFPIKKRAQKGLMAVK 721


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 210/772 (27%), Positives = 391/772 (50%), Gaps = 41/772 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            +N++ ++    L +R+  Y+   I++RA+PD+RDG KPV RRI++AM E        ++
Sbjct: 5   NQNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADNPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG  HPHGD SVY+++VR++Q +  R PLI   GN G++DGD AAA RYTE
Sbjct: 65  KSAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A  +L+ +  D VD+   +++   EP+V P++FPNLL NG +GI+ G AT IP 
Sbjct: 125 ARLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATEIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA+ ++ +   ++  ++++I GPDFPTG I ++  + +   Y+ G G   +R
Sbjct: 185 HNLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTI-LQGAKGLKAIYKSGHGKIVLR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +   +E +  G   IV+TE+PY+V KS+LI++I ++ I +++  + D+RDES  +   ++
Sbjct: 244 STSTIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTRLV 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  D + ++  +F  +D++  +  NM  ++  R  +V  L  +L+ ++AH++EV+ 
Sbjct: 304 IEIKREADAEQILNYLFKNTDLQINYHFNMIAINQRRPHEV-GLIDMLEAYIAHQKEVIL 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ + +     R+ I+ GL+     +D++IA IR  +     K  +   F  + +Q +A
Sbjct: 363 RRTQYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKEFDFSLDQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   +++E   L        ++L+  K     +  E++ VK+ F    
Sbjct: 423 IVSLQLYRLTNTDIVALQNERLELNERIGMYHNILSKDKSLKATLINELKAVKKAF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T  EV   +    Q  ++ +E + V ++  G+I+     S    D   L  +E
Sbjct: 479 --PSPRRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGYIKRTSLRSFATSDTMDLGVRE 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D +  A    T   ++L++  G+   LP   L     +  G  +    +L   + +V  
Sbjct: 537 LDYVIFAQELSTYQALVLITNKGQYIHLPVHELPDIRWKDLGMHLSQQYNLTDGEQVVFV 596

Query: 606 FVYD-----------STCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKM 650
                              L++ + +G       ++ ++  T K +    +K+ +E +++
Sbjct: 597 SPASRDINDQELAEYKDQYLVMATKEGMIKKTPLTDFVSYRTYKSRPSQAMKMKTETDEI 656

Query: 651 KLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK-- 704
             V  V  D    V ++ E    L + + ++ E   + +GV   + K             
Sbjct: 657 IGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEYGLKAQGVTAINLKKDDYLAAFLLDNQ 716

Query: 705 -ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLSS 753
            +      I    R   +  ++ +    +RG  G L+ K   ++   + LS+
Sbjct: 717 GMESQAQIILMTQRGNIKRFDNQIIADARRGSRGILMLKEL-KNNPHRVLSA 767


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/755 (28%), Positives = 392/755 (51%), Gaps = 32/755 (4%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T   E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +  
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R PLI   GN G++DGD  AA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++ L+LQ +D++ V     +++ + EP V P+ FPNLL NG++GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EAA+ L+ +P+ + + L++++ GPDFPTGGI++   + I E+Y  GRG  
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVL-GTKGIKEAYETGRGRI 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +VR++  ++E+      IVVTE+P+ V K+ +++KI E+ + K I  + ++RDE+     
Sbjct: 241 QVRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGL 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D   ++  +F  +D++  +  NM  +     P  + L  IL  +LAH+++
Sbjct: 301 SIVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAI-DRMTPVQVGLKRILSSYLAHKKD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ +R+ F ++   +R+EI++GL+ A   +D++I  IR   ++   K  ++S++  T NQ
Sbjct: 360 VVTKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLISKYEFTHNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI++L+L  L   +  Q+K E  +L  + EK + +L+  K     +  E+  VK  F 
Sbjct: 420 AEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKREF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
                G  R T      A     ++A++  E + V++S  G+++     S    D     
Sbjct: 479 -----GSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
              GD +       T D + + +  G     P   L+  +    G+ +   I L+ +++I
Sbjct: 534 LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEI 593

Query: 603 VTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKL 652
           +  F  +        L+ ++ G    V  +++        +  T +K+ S +    ++  
Sbjct: 594 IRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPTRTYKSRAITSIKLKSNDSKVVRIDQ 653

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
           V   +   + ++      + F I +IP    +  GV+  + KD            + +  
Sbjct: 654 VQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVNYVLADPKYIDL 713

Query: 712 IDSA----GRSYNRSENDLLGWLGKRGGVGSLVPK 742
           I         ++ + +  L+  +  R   G LV +
Sbjct: 714 IKIGIITQRGAFKQLKLSLINKVT-RAKRGVLVLR 747


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 259/767 (33%), Positives = 411/767 (53%), Gaps = 39/767 (5%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           G D +  +    + +   ++L +     YL YA+S +K RA+PD+ DG KPV RRI++AM
Sbjct: 152 GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 211

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +GL+      KSAR+VGEV+GK HPHGD + YD++VRLAQ F  RYPL+ GQGNFG+ 
Sbjct: 212 KRLGLNPDVKTVKSARVVGEVLGKYHPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 271

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGD AAA RYTE R+++ A+L+L  +D+  V F   Y+    EPV+ P++ P LL NG+S
Sbjct: 272 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 331

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G  ++ S   I  
Sbjct: 332 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 391

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----------- 290
            YR G G  +VRA +  EE+ RG W +V   +PY+V   +++ ++  L            
Sbjct: 392 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 451

Query: 291 -------IAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                      + ++  +RDES+ +  VR+V+ PK++S+D + L+ +I   + +ET    
Sbjct: 452 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 511

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N+ V+ +   P+   L  IL EW++ R   +  RS   +   + R+  L+G LI  ++I+
Sbjct: 512 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 571

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E+I IIR  D PK  +++ F L++ Q + IL ++LR L  L+E +++ EL+ L  E E++
Sbjct: 572 EVIRIIRGADDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 631

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             LL   K+   ++  EIR+  + +      G  R T  E ++      Q      EP+T
Sbjct: 632 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIEEAKGASIAKQVI---DEPVT 682

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           V++S +G++RS + H  D  A++FK GD  + ++   + D + +LS  G+ Y++P  +L 
Sbjct: 683 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 742

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           S RG G  +   +               S   LL  S     F  + S++    R GK+F
Sbjct: 743 SARGEGTHVSAFVQFQDGDVPFDYICGASDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 802

Query: 642 LKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             +    K   V   T     +A +  + +L++F+ D++  +S  GKG  + + +D    
Sbjct: 803 FIL-DGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQDDE-K 860

Query: 699 DVICFKICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLV 740
            V    I      +   GR     E       +  +  +RG  G  V
Sbjct: 861 LVAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGRFV 907


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 419/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH +  +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/762 (30%), Positives = 386/762 (50%), Gaps = 44/762 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG  +     + ++YR GR
Sbjct: 191 ATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLSGVRDAYRTGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VEEV      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +  
Sbjct: 250 GTFKIRATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR +V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFDVVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELETERDRLNAEIEELTRILDSDAELRKLVSGELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSA 542
           + F      G  R T    S    A      +E  P  V++S+ G + R+         A
Sbjct: 489 KKF------GNDRRTLLLESADVPAAPVPLQVEDAPCRVLLSSTGLLARTANDEPFAQDA 542

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLLI 594
               + D +  A+       + ++++ G+   L   +L              G  +   +
Sbjct: 543 AKRVKHDVIVSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFV 602

Query: 595 DLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            L  ++++V     D +   L + + +G    V       + ++    + +   +++   
Sbjct: 603 SLEDDEEVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGA 660

Query: 654 V--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK----IC 706
           +  +   + +  V ++ +LL +   Q+    R   GV       G  + VI F       
Sbjct: 661 IELRTGEEDLVFVTDDAQLLRYQAGQVRPQGRPAGGVAGVKLAQG--AKVIAFTAVDPAA 718

Query: 707 EGLTWIDSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
           + + +  +  R             +  D     G R   G  
Sbjct: 719 DAMVFTVAGSRGTLDDSVQTTAKLTPFDQFPRKG-RATGGVR 759


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/806 (29%), Positives = 386/806 (47%), Gaps = 67/806 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
            +   +  EE+   + +     L E ++ YA+STI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 51  TTQLRSTTEEHTAPIPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRE 110

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L  G  ++K AR+VGEV+GK HPHGD SVYD+LVR+AQ FV    L+ G GNFG++D 
Sbjct: 111 LNLTPGTPYRKCARVVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDA 170

Query: 124 DSAAAYRYTEARMTQVAELILQGVDE-------------DAVDFRDTYNEEDSEPVVFPS 170
           D  AA RYTE ++T+ A   L   D+              +V+F D ++  + EP V P+
Sbjct: 171 DPPAAMRYTECKLTKFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPA 230

Query: 171 KFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL----IDNPEISIEKLLEYIIGPDF 226
           + P LL NG +GIAVGMATSIP HN+ E+C+AAL +        + S ++L   +  PDF
Sbjct: 231 RVPVLLVNGAAGIAVGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDF 290

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGG+I+     +  +Y  G+G   +RA+   E+V  G   IV TE+PYQV KS L+ K 
Sbjct: 291 PTGGLIM-GTTGVARAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKT 349

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+ I A+RI  + D+RDES  +   V+F   R    ++++ ++F  + ++T FP N+  +
Sbjct: 350 ADAINARRIEGIADLRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAV 409

Query: 347 --------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                      R P  M L   L+ WL+ R + +  R++   +    R+ I++GL +A  
Sbjct: 410 DHALNDDGDDVRSPVRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATA 469

Query: 399 NIDEIIAIIRNEDKPKPVM---------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           N+D ++A+IR  D P              +  +L+E+Q  A+L L L  L  LE  ++ S
Sbjct: 470 NVDAVVALIRASDAPADAKAKLVEGGAIPAMGALSEDQASAVLALTLSRLTTLEADKLDS 529

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  +L  + E +  L++     ++ +  E+  +K+ +        RR+    V   D   
Sbjct: 530 ERKDLEVKLEGLRKLMSEDAAVYDAVVDEVAAIKKAYPTP-----RRSEI--VFDGDAEL 582

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRIL 564
             + +IE     V+++  G+++          +   +     +G +L+  +  H  D +L
Sbjct: 583 RDEDVIENARSAVLVARDGYVKRTSLEEFGAQSRGGRGRNALQGGTLRHLVTCHDHDTLL 642

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY------------DS 610
            ++  G AY + A N+   S    G  +  ++ ++ +  I                  D 
Sbjct: 643 CIADTGVAYGVRAFNVPQASRAARGVPVPSVLPVDRSTRIKGLLAVAHDTLQNPKPGDDD 702

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRK 669
              L+V++  G       +     T +G   +K+   + +         D + +      
Sbjct: 703 ELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLGEGDAVTHARLCRASDSLILATAAGM 762

Query: 670 LLIFSID--QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
           +  F+ D  ++  MSR  +GVR  + +DG     +     +    +      Y +     
Sbjct: 763 VTRFAADDSELRSMSRTTRGVRAMNLRDGDAIVKMDVAGGDHSHVLVLTAEGYGKRVALA 822

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
                KRGG+G    K   +    +S
Sbjct: 823 DLRSQKRGGMGVSAIKFKKKGDDLVS 848



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 16/226 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFK 546
              R         D     +   + E   VV++  G ++     +        L A+   
Sbjct: 678 RSTRIKGLLAVAHDTLQNPKPGDDDELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLG 737

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKA--YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           EGD++  A     +D ++L +  G    +      L S       ++ + +L     IV 
Sbjct: 738 EGDAVTHARLCRASDSLILATAAGMVTRFAADDSELRSMSRTTRGVRAM-NLRDGDAIVK 796

Query: 605 AFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKG--KTFLKVSS-EEKMKLVVKVT-GD 659
             V       +LV++++G    V  +++ +  R G   + +K     + +  +  V   D
Sbjct: 797 MDVAGGDHSHVLVLTAEGYGKRVALADLRSQKRGGMGVSAIKFKKKGDDLVSICPVAPND 856

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVICF 703
            V VV E+  ++      +   SR   GV +Q   KD  + D+   
Sbjct: 857 EVMVVTESGVIVRMDAASVTAQSRTATGVLVQKAAKDDALVDLTVV 902


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/815 (30%), Positives = 392/815 (48%), Gaps = 76/815 (9%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6   DLLATGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             ++K AR+VG+V+GK HPHGDQ+VYD+LVR+ Q F  RYPL++G GNFG++D D  AA 
Sbjct: 66  RPYRKCARVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAM 125

Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           RYTE R+  +A   IL  + E  VDF   ++    EPVV P++ P LL NG SGIAVGMA
Sbjct: 126 RYTETRLAPIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMA 185

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ EI +  +ALID+P++   +L E I GPDFPTGG I+++ E I+E+YR  +G
Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDT-EGIIEAYRTSKG 244

Query: 249 GFRVRARWCVEEVG------RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              +R    +E +       +    IVVTE+PYQV KS  IEK+AEL+   R+  + DIR
Sbjct: 245 IIPIRGVTHLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      V+    R  D   ++++++  + ++T F   +  L   + P  + L  +L+
Sbjct: 305 DESDRLGMRVVIELKRETDSQKILDNLYRQTALQTNFGTILLALVENK-PCQLSLRQLLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L  R + L R+ S  +     R+ +L GLLIA  N+D +I I+RN       K     
Sbjct: 364 EFLKFREQTLIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F+L+E Q D+IL++ +R L  LE+ ++ +E   L     ++ +LLN   +    +  E+
Sbjct: 424 AFNLSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQLQTLLNDRNELMKSLKKEL 483

Query: 480 REVKEIFSKSTDLGRRR--------------------------TTFCEVSRADKA----- 508
           R +K  F+       R                           T   E  + + A     
Sbjct: 484 RSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVLPTVTDEPIKTENAAKKAS 543

Query: 509 -------------------TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EG 548
                              TL           + I+ +G+I    S     S    K E 
Sbjct: 544 DSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIYWQSSVQATDSIASLKQEE 603

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID---LNHNQDIVTA 605
           D           + +++++  GKAY +   ++        ++  L+        + +V  
Sbjct: 604 DFPIYRQAIAQKELLIVITNQGKAYPISVVDIPPKDSQACSLLSLLPNAAQKKAEKVVGY 663

Query: 606 FVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHV 661
           F       T +L+++S +G    +  SE+     +G   +K    +++  V   +  + +
Sbjct: 664 FFLPEEKNTHELILLSQQGRIKRLPLSELNQLGNRGLALIKFKDADELSYVCLSSVDEEI 723

Query: 662 AVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
           A+     ++L F I    +  M R  +G +    + G  ++  +  K  + L  I   G 
Sbjct: 724 AIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHLAGCVTTKAQDYLVLITQLGY 783

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           +     N L   + K G +G+   +   ++     
Sbjct: 784 AKRLPVNSL--RITKLGEIGTTALQFSTKTDNLAG 816



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 514 MIEKEPIT---VVISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            + +E  T   +++S +G I+ L         +  L+ + FK+ D L     +   + I 
Sbjct: 665 FLPEEKNTHELILLSQQGRIKRLPLSELNQLGNRGLALIKFKDADELSYVCLSSVDEEIA 724

Query: 565 LLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + +T G+         LLS  G        + L + + +       +   L++++  G A
Sbjct: 725 IATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHLAGCVTTKAQDYLVLITQLGYA 784

Query: 624 FIVEESEIIANTRKGKTFLKV-----SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
             +  + +   T+ G+           ++    +V+      VA++   ++ LI S + +
Sbjct: 785 KRLPVNSL-RITKLGEIGTTALQFSTKTDNLAGIVLNQPSGKVALITNQQRRLILSAESV 843

Query: 679 PEMSR-GKGVRLQSYKDGGISDVIC 702
               + G G RL   K      ++ 
Sbjct: 844 GIWGKDGVGDRLVKLKSEESIVLVV 868


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 419/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKKDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH +  +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/751 (30%), Positives = 397/751 (52%), Gaps = 31/751 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  ++ ++L   + +R+  Y+ S I+ERA+PD+RDG KPV RRI+ AM++ G  +   
Sbjct: 1   MRDGKIEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+KSA+ VG V+G  HPHGD S+Y++LVRL+Q +  R PLI   GN G++DGD AAA RY
Sbjct: 61  FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++A L+LQ +D+D V+    +++ + EP V P++ PNLL NG +GI+ G AT I
Sbjct: 121 TEARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A + L++NP+ S+EKL+E+I GPDFPTG  I++  + I ++Y+ GRG   
Sbjct: 181 PTHNLGEVLDALVYLLNNPDASLEKLMEFIPGPDFPTG-GIIQGIDGIRKAYQTGRGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRAR  +E +  G   I VTEIPY+V K++L+++I +L +AK++  + + RDE+      
Sbjct: 240 VRARTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R  +   ++  +   +D++  +  NM  +   R  +V  L  IL  +L+ ++++
Sbjct: 300 IAIELKRGANAQGILNYLLKNTDLQINYNFNMVAIDEQRPMRV-GLKRILISYLSFQKQI 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+ F +     R+ I++GL+ A   +D++I  IR   N    K  ++++++ +  Q 
Sbjct: 359 IRRRTQFNLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLINQYAFSAEQA 418

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+ L+L  L   +  ++K E   L  + E+   +L + ++  N +  E+  +K+ F  
Sbjct: 419 EAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILTNDQELANVLRREMLAIKKEF-- 476

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHF 545
               G  R T  E          +  + KE + +++S+ G+I+     S   S       
Sbjct: 477 ----GNPRRTKIESHVEKLRVDTKVTVAKEDVILLVSHAGYIKRSSVRSFKASPIDENGL 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           +E D   +    +T   + + +  G     P   +   R    GE I   I L  N+ I+
Sbjct: 533 REDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKDTGEHISQTIGLAENEHII 592

Query: 604 TAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEE-KMKLV--- 653
            A V+D   +   +++ +S G       ++    +R   +  T +K+ S+E ++  V   
Sbjct: 593 KAMVFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSRYKSRTTTGIKLKSDEARLVSVDYY 652

Query: 654 VKVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS-DVICFKICEGLT 710
                +  + V+      + F +  +P    R  GVR  + KD   + D       + L 
Sbjct: 653 EPTNENRSLLVISHEGYAVRFDVADVPVTGLRTGGVRAINLKDDDYATDYTLVSEGQNLA 712

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            I   G     + +++    G R   G LV 
Sbjct: 713 MITQRGAFKEMASSEIET--GARARRGELVI 741


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 419/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH +  +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/768 (32%), Positives = 400/768 (52%), Gaps = 56/768 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
            + + L     ERYL YALS I  RA+PD+RDG KPV RRI+ AM + + L      +KS
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VGE +GK HPHGD+++YD++VR+AQ F  R PL+ G GNFG++DGDSAAA RYTEA+
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +  +A  +L+G+ ++ VD+RD ++    EPVV P++ PNLL NG SGIAVGMAT+IP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + E+ +AAL +I+ PE+    L+ ++I GPDFPTGG I+ +++ + E Y  G G   +R 
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +      +G    ++  +PY V KS+++E+IA+ I  + +P L ++RDES +DVRIVL 
Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQVMPLDGILKEWLAHRR 369
            K R  D +  M  +F  + ++ RF +N+  L        + P+ + L  IL+ +L  R 
Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR    +  ++ R+ IL+G    +  +DE I IIR   N+      ++ RF L E 
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL  +L  L ++E   I+ EL    A  E I  LL+    +W  +  E++++++ +
Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEY 478

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +        R +      AD    ++  I  E + V+++  GW++   ++S DL A+  +
Sbjct: 479 TDE------RRSTLVGPGADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +GD +  AL   T   +   +  G  YT     + S  G+G+ +Q L   +  + +V   
Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591

Query: 607 VYDS---------------------------TCKLLVVSSKGNAFIVEES-EIIANTRKG 638
            +D                               ++ +S  G A        +  +   G
Sbjct: 592 SFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTG 651

Query: 639 KTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG 696
           + ++++   +++  V    GD  + +   + + L+F + Q+       KGVR    +D  
Sbjct: 652 RKYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDND 711

Query: 697 --ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +   +  +  +GLT   + GR               RG  G+LV K
Sbjct: 712 RVLDFALSTRARDGLTVETNNGREEIVRTTKFDA--TNRGAKGTLVIK 757



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
            +  G++    S S     +  ++GD +     A   + I L S DG+A   P   +   
Sbjct: 638 FTLDGYLE--PSISTGRKYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQVSVY 695

Query: 584 RGHGEAIQLLIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +G  + ++  I L  N  ++  A    +   L V ++ G   IV  ++  A  R  K  L
Sbjct: 696 KGPAKGVRA-IRLEDNDRVLDFALSTRARDGLTVETNNGREEIVRTTKFDATNRGAKGTL 754

Query: 643 KVSSE 647
            +   
Sbjct: 755 VIKRG 759


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 TKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++        D G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------IDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    DH +  +    +++I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 188/644 (29%), Positives = 329/644 (51%), Gaps = 30/644 (4%)

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP+H++ E+ +  LAL ++P+ISI +L+EYI GPDFPT G+I+  R  I  +Y  GR
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGR 119

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   VR R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES  
Sbjct: 120 GSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDR 179

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++    R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H
Sbjct: 180 SGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEH 238

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424
           ++ V+ RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L+
Sbjct: 239 QKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLS 298

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AIL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K 
Sbjct: 299 DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 358

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSH 536
            ++       RRT     +    +   + +I +E + + ++ RG+I+          +  
Sbjct: 359 KYADK-----RRTEIL--AGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRG 411

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLI 594
              +  +   E D ++  +   T D +L  +  GK Y      +        G  I  L+
Sbjct: 412 GRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLL 471

Query: 595 DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +   + +        +     L   +  G       S+     + G   +++   +++ 
Sbjct: 472 GIESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELI 531

Query: 652 LVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
            V    G+ ++ +  ++ + + F    I  M R   GVR    ++G   +VI  ++ E  
Sbjct: 532 SVQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRGIRLREG--DEVIGMEVLEDD 589

Query: 710 T-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +    + Y +        L  RGG+G        ++G  ++
Sbjct: 590 EKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 633



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 473 IESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 532

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    +++ +  G++   P  N+         ++  I L    +++   V +   K
Sbjct: 533 VQMTDGNKNMIIATKHGQSIYFPEANIRVMGRTAAGVRG-IRLREGDEVIGMEVLEDDEK 591

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 592 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 651

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 652 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 685



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 467 IINLLGI-ESQEQVNAVINLSEFTDDNYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 525

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +EGD +    
Sbjct: 526 ENDELISVQMTDGNKNMIIA-TKHGQSIYFPEANIRVMGRTAAGVRGIRLREGDEVIGME 584

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 585 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 644

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 645 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 687


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/745 (32%), Positives = 400/745 (53%), Gaps = 42/745 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+++M E+GL     +KK
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGT+GIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L + P+ +IE+L  +I GPDFPTGG+I  ++E +++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      IV+ EIPYQV K  LI+KIAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  D + +++ ++  + +E  FP+N+ VL   + P+V+ L  +L+E++ HR E++ R
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQ-PRVLNLKELLQEFIKHRIEIITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL+ A  N D++I I+R+       + ++ S+F+L+E Q +AI
Sbjct: 361 RTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQLLTSQFNLSETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L  + E+   +L+S  ++      E  E+   +     
Sbjct: 421 LDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSDNEKIKVFIEETDELVRKYGD--- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------- 542
             +R+TT            ++ +  KE     I N G I + K       A         
Sbjct: 478 --QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIINS 526

Query: 543 --LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
             +   EG+ +        +  I   + DGKAY     +L  G          +++   +
Sbjct: 527 LSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK-------LNIE-GE 578

Query: 601 DIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL-VVKVTG 658
            + TA+  +    ++ +++ KG    + + +I   + +G T + ++  +++ + V     
Sbjct: 579 IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKS-QGHTVMPLNEGDELVVAVADRHP 637

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            ++ +  +N  LL+F  +++     + KGV      D        F +      + S   
Sbjct: 638 SYIGIYTKNADLLLFERNEVRITGDKAKGVEAIDL-DENDEVAGAFFLNGHEYLLISTSF 696

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
            Y +        + KR   G L  K
Sbjct: 697 GYMKLVEKTEFPIKKRAQKGLLAVK 721


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/756 (30%), Positives = 383/756 (50%), Gaps = 43/756 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLGGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +       
Sbjct: 261 RATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  V
Sbjct: 321 LVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFSV 379

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q 
Sbjct: 380 VRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQT 439

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  +++SE D L AE E++ ++L S  +    ++ E+  V +    
Sbjct: 440 QYILDTPLRRLTKFDRLELESERDRLNAEIEELTAILESDAELRKLVSSELAAVAKKHGT 499

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFKE 547
                 RRT   E S           +  +P  V++S+ G I R+  +  +   +    +
Sbjct: 500 P-----RRTVLLE-SADSPVAAIPLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRAK 553

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGH----GEAIQLLIDLNHNQ 600
            D ++ A+ A     +  +++ G+   L   +L     G G     G  +   + L  ++
Sbjct: 554 HDVIRSAVPATARGEVGAVTSAGRLLRLTVVDLPQLAEGAGPALVGGAPVAEFLRLEGDE 613

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
            +V     D +   L + +++G    V   +  AN R+    + +   +++     ++  
Sbjct: 614 TLVCLCTLDESSPGLALGTAQGVVKRV-VPDYPAN-REELEVITLREGDRIVGAAELRTG 671

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWI 712
            + +  + ++ +LL F    +    R   GV      +G  + V+ F +     +   + 
Sbjct: 672 EEDLVFITDDAQLLRFPASAVRAQGRPAGGVAGVKLTEG--AKVLSFDVVDPAVDAAVFT 729

Query: 713 DSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
            +  R             +  D     G R   G  
Sbjct: 730 VAGSRGTLDDSVQTTAKLTPFDQFPRKG-RATGGVR 764


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/755 (31%), Positives = 384/755 (50%), Gaps = 40/755 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGG-RIVGLGGIKDAYTAGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +       
Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR EV
Sbjct: 315 LVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFEV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  +++ FSL+E Q 
Sbjct: 374 VRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQT 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V + F  
Sbjct: 434 QYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKFGT 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK- 546
                 RRT   E S   +       +  +P  V++S+ G + R+  +  V++S    + 
Sbjct: 494 -----DRRTVLLE-SAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISEDARRT 547

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLNH 598
           + D +  A+ A     +  +++ G+   L   +L              G  I   + L  
Sbjct: 548 KHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEA 607

Query: 599 NQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VK 655
           ++++V     D +   L + + +G    V         +     + +   +++     ++
Sbjct: 608 DEELVCLTTLDESSPGLAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRVVGATELR 665

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVICFK 704
              + +  +  + +LL +    +    R   G+       G            S+ I F 
Sbjct: 666 TGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASEAIVFT 725

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +      +D +  +   +  D     G R   G  
Sbjct: 726 VAGSHGTLDDSVLTSKLTPFDQYPRKG-RATGGVR 759


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 381/752 (50%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVM-GTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL   K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLADRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDINKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLR 746


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/752 (29%), Positives = 383/752 (50%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   IIERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNYHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P  S+E L+ Y+ GPDFPTG II+   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPNASLEDLMNYVKGPDFPTGAIIM-GTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IVVTEIP++V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H   V+
Sbjct: 302 VIELKKDADSQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILASYLEHEEAVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++ +  TENQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDKVIKTIRASKNKSDAKKNLIASYDFTENQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +   + +E   L    EK   LL+  K    +I  E+  VK+ F   
Sbjct: 421 AIVSLQLYRLTNTDVDALIAEQTKLNKLAEKYRKLLSDRKTLEKEIIKELSTVKKEFDNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                RRT   E S       ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 -----RRTQISEQSAK-VEIDEKALVADEKVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSDEKIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEKMK----LVV 654
            F +D        L+ ++ G    +E + +        +  + + + S   +     L+ 
Sbjct: 595 VFAFDDLNTNSNFLLATNDGYIKQLELANLQPTRTYRSRAMSAINLKSNNSLLVGVDLIA 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I+++P    +  GV+  + KD            + +  I 
Sbjct: 655 PNADKEITLFTNRAYAVRYNINEVPSSGAKAAGVKSVNLKDDDYIVGYVLVDNKYVDLIK 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +  +  L     R   G LV +
Sbjct: 715 VGLITQRGAYKQFDLNLVNKVSRAKRGVLVLR 746


>gi|332670664|ref|YP_004453672.1| DNA topoisomerase [Cellulomonas fimi ATCC 484]
 gi|332339702|gb|AEE46285.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas fimi ATCC 484]
          Length = 824

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/715 (32%), Positives = 370/715 (51%), Gaps = 36/715 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  M++MGL     + K
Sbjct: 17  EKIVDIDVASEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMADMGLRPDRPYVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD  +YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDAPIYDAMVRLAQSFALRLPLVDGHGNFGSLD-DGPAAPRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +  G+DED VDF   Y+ + ++P V P+  PNLL NG +GIAVGMAT++  H
Sbjct: 136 RLAPSATAMTTGLDEDVVDFVPNYDNKLTQPEVLPAAIPNLLVNGAAGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +PE ++++L+ ++ GPD PTGG IV   + + ++YR GRG F+ RA
Sbjct: 196 NLVEVVAAARHLVLHPEATLDELMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRGAFKTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
              VE V      IV+TE+PY V   ++IEKI E + +K++  + D  D +       ++
Sbjct: 255 TAVVENVTPRRKGIVITELPYMVGPEKVIEKIKEGVQSKKLSGISDAVDLTDRQHGLRLV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                   P+ ++E ++  + +E  F +N   L  G+ P+ + L  +L+ W+ HR  V+ 
Sbjct: 315 IEVKTGFHPEAVLEQLYRYTPLEDSFSINNVALVDGQ-PRTLGLRELLQVWVDHRVAVVR 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RRS  R+     R+ +++GLL+A L+IDE+I +IR  D     +  + + F L+E Q + 
Sbjct: 374 RRSQHRLTKRQERLHLVEGLLVAILDIDEVIQVIRTSDDAESARTRLQTVFDLSELQAEY 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E + LLAE  +++++L   ++    ++ E+ EV   +    
Sbjct: 434 ILELRLRRLTKFSRLELEREKEQLLAEIAELEAILADDRRLRTLVSDEMAEVAATYGTP- 492

Query: 491 DLGRRRTTFCE--------VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541
               RRT   E         + A +A+     IE  P   ++S  G + R+    +   +
Sbjct: 493 ----RRTILLESAGGSSVTGAPAARASATPLEIEDSPCWALLSGTGLLARTADGDAPRRT 548

Query: 542 ALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQL 592
           A   +   D L  A+       I  +++ G+   L   +L +            G  +  
Sbjct: 549 ADARRAKHDVLASAVATTARADIGAVTSRGRMVRLSVLDLPALPPTDGPPSLSGGVPLGE 608

Query: 593 LIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           ++ L   + +V  A + D    L + +++G    V   +   N R     + +  ++ + 
Sbjct: 609 VVSLQPGERVVALASLADDAPTLALATAQGTVKRVAPGDAPGN-RDEWVVIALRDDDSVV 667

Query: 652 LVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
             V V   D + +V  +  LL F    +    R   G+       G    V+ F 
Sbjct: 668 GAVAVADDDELVLVSSDSSLLHFPASAVRPQGRAAGGMAGIKLAAG--QRVVAFA 720


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/761 (30%), Positives = 388/761 (50%), Gaps = 42/761 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + ++ED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLSGIRDAYASGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   ++ V      +VVTE+P+ V   ++I KI +L+ AK+I  + D++D +  
Sbjct: 250 GTFKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR +V+ RRS FR      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RF+L
Sbjct: 369 HRFDVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIERFAL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  +++SE + L AE  ++  +L+S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKFDRIELESEKERLNAEIAELTRILDSDAELRKLVSAELAAVS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSV--DL 540
           + F        RRT   E S A  A   Q     +P  V++S+ G + R+  ++    D 
Sbjct: 489 KKFGT-----DRRTVLLESSGAPAAVPLQV--ADDPCRVLLSSTGLLARTADANPFADDG 541

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQL 592
                K  D +  A+ A     + ++++ G+   +   +L              G  +  
Sbjct: 542 KGRRVKH-DLIVSAVPATARGEVGVVTSAGRLLRVNVVDLPQLPEQTGTPNLSGGAPLAE 600

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L+ ++ +V     D +   L + + +G    V       + ++    + +   +++ 
Sbjct: 601 FVSLDADETVVCLTTLDESSPGLALGTEQGVVKRVVPD--YPSNKEELEVITLKEGDRIV 658

Query: 652 LV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------IS 698
               ++   + +  + ++ +LL +   Q+    R   GV       G            +
Sbjct: 659 GAAELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLTQGAKVISFTAVDPAA 718

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           D + F +      +D + ++  ++          R   G  
Sbjct: 719 DAVVFTVAGSRGTLDDSVQTTAKATPFDQYPRKGRATGGVR 759


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 376/775 (48%), Gaps = 49/775 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           + T V + V  + +   +   +L YA S I  RA+PD RDG KPV RRI+  M E+GL  
Sbjct: 10  TPTQVADTVIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMDELGLRP 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KS+R+VGEV+GK HPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D  AA
Sbjct: 70  DRGYVKSSRVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFGSLD-DGPAA 128

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM   A L+ Q +DED VD    Y+++  +P V P+ +PNLL NG SGIAVGMA
Sbjct: 129 SRYTEARMAPAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNGASGIAVGMA 188

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  HN+ E+  AA  L+DNP  ++E L+ ++ GPD P GG  +   + I ++YR GRG
Sbjct: 189 TNIAPHNMGEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGG-RIVGLDGIRDAYRTGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR RA   +E V      IVVTE+PY V   ++I K+   + AK++  + D++D +   
Sbjct: 248 SFRTRATVRIENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIADVKDLTDRH 307

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ ++  ++  + ME  F +N   L  G+ P+ + L  +L  ++  
Sbjct: 308 KGLQLVIEVKNGFNPEAVLAQLYKQTPMEESFGINNVALVDGQ-PRTLGLRELLAVYVDF 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLT 424
           R EV+ RR+ FR++    R+ +++GLL+A L+IDE+I +IR+ D   + +  ++  F L+
Sbjct: 367 RCEVVRRRTEFRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRLMQVFDLS 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL L+LR L K    ++++E D+LL   E++ ++L         ++ E+  V +
Sbjct: 427 ELQANYILELQLRRLTKFSRIELETERDDLLRAIEELQAILADEALLRRVVSDELAAVAK 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMI-EKEPITVVISNRGWIRSLKSH------- 536
             +       RRT   E   A   T    +    +P+TVV+S  G +  +          
Sbjct: 487 EHATP-----RRTVLLESEAAAAMTPAAPLEVADDPVTVVLSATGLVARVPRGEDTPSVL 541

Query: 537 ---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-------GRGH 586
               V  +     + D+L   + +     + L+++ G+   L   +L +       G   
Sbjct: 542 SRDDVRAAGAGRVDHDALASVVASTARGTVGLVTSTGRLVRLSVVDLPALPGSDALGMAG 601

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  +    +L   +  +     +       L + ++ G    V         +     + 
Sbjct: 602 GAPLAAFTELAGGERPLALVRVEGAEDSPGLALATAGGVVKRVRPD--YPGGKDSFEVIT 659

Query: 644 VSSEEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG--GIS 698
           ++  +++   V      + +  V +   LL +S   +    R G GV      +G   + 
Sbjct: 660 LADGDELVGAVELATGEEDLVFVTDAAALLTYSASLVRPQGRSGSGVAGIKVPEGQRVLG 719

Query: 699 DVICFKICEGLTWIDSAGR--------SYNRSENDLLGWLGK-RGGVGSLVPKGF 744
                   E    +  AG         +       L  +  K R   G    +  
Sbjct: 720 FAAVPAASEDAMVVTVAGSSGALPGTDAGTVKVTPLSAYPAKGRATAGVRCHRLL 774


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 253/731 (34%), Positives = 399/731 (54%), Gaps = 45/731 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  V +   + + Y+ YA+S I  RAIPD+RDG KPV RRI++AM +MGL     F KS
Sbjct: 2   DIIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG V+G  HPHGDQ+VYD+LVR+AQ F   YPLI GQGNFG++DGD  AA RYTEA+
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++ A L+L+ +D++ VDF   ++    EP V PSKFPNLL NGT+GIAVG+ATSIP HN
Sbjct: 122 LSRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHN 181

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+C+A + L  NP ++ ++++  I GPDFPTGGI VE+ + ++E Y  GRG  R+RA+
Sbjct: 182 LSEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGI-VENYQELLEFYEKGRGQVRIRAK 240

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             VE+V  G   IVVTEIPYQV K+ LI++IAEL+   R+  + DIRDES ++   ++  
Sbjct: 241 AHVEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIE 300

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    + ++E ++ L+ +   FP+N  VL  G   QV  +  +L+E++ HR EV+ RR
Sbjct: 301 LKRDASGEKVLEKLYKLTALRKNFPINFVVLIDGEPRQV-GIKTLLQEFIRHRLEVILRR 359

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           S + ++  + R+ +++GLL A  N+D +IA IR+ +     +  +  ++ LT  Q +A+L
Sbjct: 360 SRYLLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYGLTPLQAEAVL 419

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL+ L  LE  +++ E   L  + E    ++ S  ++   +  E+ E+         L
Sbjct: 420 DMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSEDERVRILIEEMEELIRT------L 473

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
              R TF E    +  T          ITVVI   G I  + S           E   + 
Sbjct: 474 PSVRRTFVEGLEGEDKTGS--------ITVVIYQNGRILPVTSM----------EEGVVV 515

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-NHNQDIVTAFV-YDS 610
             L     D + L+S+ G+ Y +     L G          IDL    + +V AFV   +
Sbjct: 516 NILEVPYDDGLFLVSSKGRVYWIGGSQALQG--------SRIDLKEQGEYVVGAFVRSQA 567

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           + +L++ ++ G    +   +      +G   +K++  +++  +++   +  + +     +
Sbjct: 568 SDRLVLATAMGYIKKIPLVDFE-YRAQGMPIIKLAEGDEIVRLLQSPEEGDLLLYTHRGR 626

Query: 670 LLIFSIDQIPEMSRG-KGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +L F +  +P    G KGV     +D   +  V      + +  I   G+    S  ++ 
Sbjct: 627 VLRFPVKDVPPAGVGSKGVVGIKLEDKDRVVGVKAILGAKYILVITEDGKVKKVSSQEIP 686

Query: 728 GWLGKRGGVGS 738
                RG  G 
Sbjct: 687 VR--SRGSKGI 695


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/755 (31%), Positives = 384/755 (50%), Gaps = 40/755 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL     + 
Sbjct: 16  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   AA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E RM     L+ + +DED VDF+  Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P
Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  GRG F++
Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGG-RIVGLGGIKDAYTAGRGSFKI 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +       
Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR EV
Sbjct: 315 LVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFEV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  +++ FSL+E Q 
Sbjct: 374 VRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQT 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  V + F  
Sbjct: 434 QYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKFGT 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK- 546
                 RRT   E S   +       +  +P  V++S+ G + R+  +  V++S    + 
Sbjct: 494 -----DRRTVLLE-SAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISEDARRT 547

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQLLIDLNH 598
           + D +  A+ A     +  +++ G+   L   +L              G  I   + L  
Sbjct: 548 KHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEA 607

Query: 599 NQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VK 655
           ++++V     D +   L + + +G    V         +     + +   +++     ++
Sbjct: 608 DEELVCLTTLDESSPGLAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRIVGATELR 665

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDVICFK 704
              + +  +  + +LL +    +    R   G+       G            S+ I F 
Sbjct: 666 TGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASEAIVFT 725

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +      +D +  +   +  D     G R   G  
Sbjct: 726 VAGSHGTLDDSVLTSKLTPFDQYPRKG-RATGGVR 759


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 254/770 (32%), Positives = 405/770 (52%), Gaps = 40/770 (5%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           +L ++ +   SL   +E+ +L YA+S I  RA+PDL+DG KPVHRRII++  +  L   A
Sbjct: 16  SLEKDTIFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNSA 75

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            FKKSA +VG V+G  HPHGD S+Y++LVR+AQ F  RYPLI GQGNFG+IDGDS AA R
Sbjct: 76  KFKKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAMR 135

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++ E  L G+DE+ VDF D Y++   EPVV P+  PNLL NG++GIAVG+AT+
Sbjct: 136 YTEARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLATN 195

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+  A L LI NP  S   LL+YI GPDFPTGG I      + + +  G G F
Sbjct: 196 IPPHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFR-YSGVRDYFSTGSGKF 254

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI---------PLLEDI 301
            +R++  VEE  +    +++ EIPY V+K+++IE I +LI   +            + +I
Sbjct: 255 ILRSKIEVEEQVK-KNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVEI 313

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES  +   ++      +   +++ +++  + ++T + +N+ VL  G+  ++  L  +L
Sbjct: 314 RDESNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGKPERI-SLLQLL 372

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           K +L H+ E+L RR+ F++  + +R+ IL+G L    +I E I +I   D P+  + +R+
Sbjct: 373 KLYLEHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEEDLRARY 432

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL++ Q+D I  L + SL+K+   +++ EL          +S+LNS  +     + ++ E
Sbjct: 433 SLSDEQLDDIFRLTVGSLKKISISKLQEELVTKTDLSIFKESILNSDDKLREVFSEKLIE 492

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--RSLKSHSVD 539
           +++ F        RRT       A  A     +   +   + +S+RG++  R L ++ + 
Sbjct: 493 LRDKFGD-----DRRTRV--NMEASGAIDYCELFHFQKTVISLSHRGYLSQRPLSTYKLH 545

Query: 540 LSALHFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQ 591
                 KEG      D  K+ L  H  D +L  S  GK Y   A    L  G+       
Sbjct: 546 KRGGSGKEGAFHYKDDKPKMFLVCHGKDDVLFFSDSGKVYKKKAYEMNLREGKNKATITY 605

Query: 592 LLID-LNHNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            ++  L+  + IVT        Y     LL  +SKG       S      + GK  + + 
Sbjct: 606 NVLPGLSKGEKIVTIIALPEGSYGDNKYLLFATSKGLVKRCSMSLFEKINKNGKVAITLR 665

Query: 646 SEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
             + +K V+ +  D HV +  ++ +++ F   +I   SR   GV   +   G +  +   
Sbjct: 666 DGDSLKFVITLENDSHVCLASDSGRMVKFLASEIRPSSRIASGVFGINVGSGEL--ISAS 723

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV-GSLVPKGFPRSGKFLS 752
              EG   +  +     +        L KRG   G +  K   ++GK L+
Sbjct: 724 STYEGDYVLSISELGKGKLTPVSEYSLVKRGKKVGLIAQKTTEKTGKVLA 773



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 14/197 (7%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           L +         +  +++G ++        K +     A+  ++GDSLK  +       +
Sbjct: 623 LPEGSYGDNKYLLFATSKGLVKRCSMSLFEKINKNGKVAITLRDGDSLKFVITLENDSHV 682

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            L S  G+     A  +         +   I++   + I  +  Y+    +L +S  G  
Sbjct: 683 CLASDSGRMVKFLASEIRPSSRIASGVFG-INVGSGELISASSTYEGD-YVLSISELGKG 740

Query: 624 FIVEESEIIANTRKGK-TFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQI 678
            +   SE     R  K   +   + EK   V+  T     D + ++    +   F +  I
Sbjct: 741 KLTPVSEYSLVKRGKKVGLIAQKTTEKTGKVLACTIVRESDEILLLTNQNRQNRFRVSDI 800

Query: 679 PEMSRGK-GVRLQSYKD 694
               R   GV L   ++
Sbjct: 801 SVQGRSTSGVNLFKLEN 817


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/760 (30%), Positives = 381/760 (50%), Gaps = 38/760 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RRDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DE+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     + ++Y  
Sbjct: 188 GMATNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGG-RIVGLGGVRDAYAT 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I IIR   N  + +  ++ RF
Sbjct: 366 LDHRFTVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL++ Q   IL+  LR L + +  +++SE D L AE E++  +L+S  +    ++ E+  
Sbjct: 426 SLSDIQTQYILDTPLRRLTRFDRIELESERDRLTAEIEELSRILDSDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + +        RRT   E S A  A   Q   E  P  V++S+ G +      +    
Sbjct: 486 VSKKYGT-----DRRTVLLESSGAAAAVPLQV--EDTPCRVLLSSTGLLARTADATPLAE 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL 593
           A    + D +  A+ A     +  +++ G+   L   +L              G  +   
Sbjct: 539 APKRVKHDLIVSAVAATARGEVGAVTSAGRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEF 598

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D +   L + +++G    V   +  A+ ++    + +   +++  
Sbjct: 599 LTLEADERLVCLTTLDESSPGLALGTAQGVVKRV-VPDYPAH-KEELEVISLRDGDRIVG 656

Query: 653 V--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------ISD 699
              ++   + +  + +   LL F    +    R   G+      +G             D
Sbjct: 657 ATELRTGEEDLVFITDEAHLLRFPASVVRPQGRPAGGMAGVKLGEGARVVSFTAVDPAVD 716

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + F +      +D + ++  +           R   G  
Sbjct: 717 AVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVR 756


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 213/753 (28%), Positives = 381/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVM-GTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR      D  K ++      TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
                  R T      A     ++A++  E + V+IS  G+++     S   +       
Sbjct: 481 P------RRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
            +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+
Sbjct: 535 PDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQII 594

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKV 656
             FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  +
Sbjct: 595 RVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLI 654

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             D    + +       + + + +IP    +  GV+  + KD            + +  +
Sbjct: 655 KSDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLM 714

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 715 HVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 747


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 213/753 (28%), Positives = 381/753 (50%), Gaps = 31/753 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM +    +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+  V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVM-GTKGIKEAYKTGRGRIKV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTENQV 428
            +R+ F +   + R+EI++GL+ A   +D++I  IR      D  K ++      TE Q 
Sbjct: 361 TKRTKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNKFTEKQA 420

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI++L+L  L   +  ++ +E D L    EK   LL+       +I  E+  VK+ F+ 
Sbjct: 421 EAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKEFAN 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHF 545
                  R T      A     ++A++  E + V+IS  G+++     S   +       
Sbjct: 481 P------RRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNGL 534

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
            +GD +       T   + L +  G     P   L+  +    G+ +   I L+ ++ I+
Sbjct: 535 PDGDKVVYKNTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQII 594

Query: 604 TAFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEK-MKLVVKV 656
             FV+D   + C  ++ ++ G    +E + +        +  T +K+  ++  +  V  +
Sbjct: 595 RVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRTYKSRAMTAIKLKGKDSYVVGVDLI 654

Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
             D    + +       + + + +IP    +  GV+  + KD            + +  +
Sbjct: 655 KSDNHKEITLFTHRAYAIRYDVSEIPTSGAKAVGVKSANLKDDDYIVNYVLVDSKYVDLM 714

Query: 713 DSA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                  R   +     L     R   G LV +
Sbjct: 715 HVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 747


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/750 (28%), Positives = 382/750 (50%), Gaps = 29/750 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F   FK
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPFK 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++ L+LQ +D++ V     +++ + EP V P++FPNLL NG++GI+ G AT IP 
Sbjct: 124 SRLSKISNLLLQDIDKNTVKMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + L+ +PE S+E L++++ GPDFPTG +I+   + I E+Y+ GRG  +VR
Sbjct: 184 HNLAEVIDATIYLLKHPEASLEDLMQFVKGPDFPTGAVIM-GTKGIKEAYQTGRGRIQVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      ++
Sbjct: 243 AKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               ++ D + ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+ 
Sbjct: 303 IELKKNADAENILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILSSYLEHDEDVIT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           +R+ + +   + R+EI++GL+ A   +D++I  IR   N+   K  ++  F  TE Q +A
Sbjct: 362 KRTKYDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKEFKFTERQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I++L+L  L   +   + +E ++L  +      LL+       +I  E+  VK+ F+   
Sbjct: 422 IVSLQLYRLTNTDVDALIAEQNDLNKKVAVYQKLLSDRATLEKEIIKELTAVKKNFASP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKE 547
                R T      A     ++A++  E + V++S  G+++     S   S        E
Sbjct: 481 -----RRTQISHESAKVEIDEKALVADEQVRVLVSRDGYLKRSSLRSYQSSDEADNGLPE 535

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA 605
            D +       T D + L +  G     P   L   +    G+ +   + L  ++ I+  
Sbjct: 536 NDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTETKWKETGQHLSQEVGLATDEQIIRV 595

Query: 606 FVY---DSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEE-KMKLV--VKV 656
           F +   D     L+ ++ G    V+ S++        +  T +K+ SE+ KM  +  +K 
Sbjct: 596 FDFDKLDKNVDFLMATNDGYIKQVKLSDLQPTRTYRSRAITAMKMKSEDSKMIRIDLIKT 655

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
               + +       + + + +I E   +  GV+  + KD            E    I   
Sbjct: 656 NSGEITLFTHRAYAVKYDVSEISEFGGKALGVKSVNLKDDDYVVGYVLVQPEFADLIKVG 715

Query: 716 ---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
               R   +     L     R   G +V +
Sbjct: 716 LITQRGAFKQFKLSLVNKVSRAKRGVMVLR 745


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 364/752 (48%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM++ G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + +D VD    +++   EP V PS+ P+LL NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A + L+D+PE     L+ YI GPDFPTGGI ++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALIYLLDHPEAPQSALMRYIKGPDFPTGGI-IQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTAISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+  + + ++  +F  +D++  +  NM  +   R   V  L   L+ ++A R+EV+
Sbjct: 300 VIELNKDTNANGILTYLFKKTDLQIAYNFNMVAIHDQRPVHV-SLKQALEAFIAFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR     K       +RF  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIARFDFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L  +   +  ++N        I  EI  + + +  +
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFAALTEKINHLTEVMNEEMALKAVIRDEITAITQKYQSA 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--ALHFKE 547
                 R +  E    D    +   I +E + V++S  G+ +     S   S       +
Sbjct: 479 ------RRSQIEAEVEDLVIDKAVTIAEEDVQVLVSRNGYYKRASIRSYKASDKDNGLAD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604
            D        +TT  + + +  G     P   L   R    GE   Q L +    + ++ 
Sbjct: 533 DDLPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRWKDTGEHFSQELSNWRTEEYVIK 592

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---- 657
                  +      +V++ G       S+++    K KT + +  +     VV       
Sbjct: 593 VVPINTLEQGGAFTIVTNDGFIKQTTLSDMLPKAYKKKTSMAIKLKTDDSYVVNADYFET 652

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V ++ ++   L F++  IPE+  R  GV+    ++        F   E       
Sbjct: 653 VGQQDVLLLSQHGVGLRFAVKSIPEIGARTAGVKAMDLRNEDTIKAAVFVTNEAQRVAIM 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 ADNGAFKYMPVSEITRSKRANKGLLIF--TQK 742


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 385/763 (50%), Gaps = 41/763 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                F K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF   Y+  + EP+  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI +P   ++ L+ ++ GPD PTGG  +     + ++Y  
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGG-RIVGLGGVRDAYEK 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V +    +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRQHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR   N  + K  +++RF
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIARF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+  LR L K +  +++SE D L AE E++  +L+S  +    ++ E+ +
Sbjct: 426 ELSDVQTQYILDTPLRRLTKFDRIELESERDRLKAEIEELTRILDSDAELRKLVSAELAQ 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S     T     +  +P  V++S+ G + R+        
Sbjct: 486 VAKKFGTE-----RRTVLLE-SADAPVTAVPLEVADDPCRVLLSSTGLLARTANGEPFPG 539

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQ 591
                +   D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 EEQAKRAKHDVIVSAVPATARGDLGAVTSTGRLLRLAVVDLPILPETAWAPNLAGGAPIA 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L   ++++     D +   L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLSLEDGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAN-KDELEVIGLKEGDRI 657

Query: 651 KLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------I 697
              V  +   + +  + ++ +LL +   Q+    R   G+       G            
Sbjct: 658 VGAVELRTGEEDLVFITDDAQLLRYPASQVRPQGRPAGGMAGIKLGAGAKVISFTAVDPA 717

Query: 698 SDVICFKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            D + F I     T  DS  +S   +  D     G R   G  
Sbjct: 718 VDAVVFTIAGSHGTLDDSVQQSAKLTPFDQYPRKG-RATGGVR 759


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 382/752 (50%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVM-GTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLR 746


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 217/752 (28%), Positives = 385/752 (51%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+E L++Y+ GPDFPTG I++   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVM-GTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VVELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILASYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ + +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKYDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDTDNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMK----LVV 654
            F +   ++    L+ ++ G    +E + +        +  T +K+ S++ +     LV 
Sbjct: 595 VFAFNNLNADENFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKSKDSLLVGVDLVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PNAKKEITLFTHRAYAIRYDISEIPASGAKAIGVKSANLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 746


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 262/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+ NP  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/771 (28%), Positives = 398/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +      Q + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQ-LGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/777 (29%), Positives = 373/777 (48%), Gaps = 42/777 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +   + E +  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MAHKPATTTPAPIAERIIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL       K +R+VGEV+GKLHPHGD ++YD+LVRLAQ F  R PL+ G GNFG+
Sbjct: 61  MADMGLRPDRGHVKCSRVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   ++P V P+  P LL NG 
Sbjct: 121 LD-DGPAAARYTEARLAASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  L+ +P+ +++ L+ ++ GPD PTGG  +   + I 
Sbjct: 180 SGIAVGMATNLAPHNLVEVISAARHLLAHPDATLDDLMRHVPGPDLPTGG-RIVGLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG FR RA   +  V      IV+TE+PY V   ++IEKI E +  K++  + +
Sbjct: 239 EAYETGRGSFRTRATAQITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       DPD ++E+++  + +E  F +N   L  G+ P+ + L  
Sbjct: 299 VTDLTDREHGLKLVIEVKTGFDPDAVLEALYRYTPLEESFGINNVALVDGQ-PRTLGLRD 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +++ W+ HR  V+ RRS +R++    R  +++GLL A L+IDE+I +IR  D     +  
Sbjct: 358 MIQVWVNHRISVIRRRSEYRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+E Q D IL LRLR L K    +++ E D+L A+  ++  +L   +     ++
Sbjct: 418 LMDVFDLSEVQADYILELRLRRLTKFSRLELEKERDDLAAQIAELTEILGDERVLHRLVS 477

Query: 477 CEIREVKEIFSKS------TDLGRRRTTFCEVSRADKATLQQA--MIEKEPITVVISNRG 528
            E+ +V             T  G   T+  + +    A +  A   I   P TVV+S+ G
Sbjct: 478 QEMADVARAHGTPRRTVLVTSDGSVSTSSAQPAPRRGAPVDPASLQIADAPCTVVLSSTG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS------ 582
            +      S  ++       D+L           I  L++ G+   +    L +      
Sbjct: 538 LLARTTDDSPLVADDQRSAHDALTSVTSTSVRGTIGALTSRGRVIKIQVVELPAIPSVDR 597

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
                 G  +  L++L   + ++    + +    L + ++ G    V  +E     R   
Sbjct: 598 SVSVAAGIPVTDLVELEGTERVIALVSFAEQAPPLAMGTAAGVVKRVAMNE---PPRADV 654

Query: 640 -TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
              + +   +++      T D  +  +  + +LL F+   +    R   G+       G 
Sbjct: 655 FDAITLKEGDEIVGAAHCTDDADLVFLSSDARLLRFTASSVRPQGRAAGGMSGMKLAPGT 714

Query: 697 IS---DVICFKICEGLTWIDSA--------GRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +    VI       +  I  A        G S   S  DL    G R   G    +
Sbjct: 715 RALSFSVISPDTEAAVVTIAGARDALDNSVGGSIKVSPFDLFPRKG-RATGGVRAHR 770


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 382/752 (50%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVM-GTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLR 746


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/738 (28%), Positives = 362/738 (49%), Gaps = 43/738 (5%)

Query: 30   YLAYALSTI-KERAIPDLRDGFK-----PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
            Y+A  L+   +E   P++ D  +     P  R+ +   +        A   + R++   I
Sbjct: 541  YVARLLAEFGREHLTPEIYDAQRNANWIPSFRKAVAYFTGFDEMLAVAATHNHRVIN--I 598

Query: 84   GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             +L  H D  VYD  V     F+     I       +IDGD AAA RYTEAR++ +AE +
Sbjct: 599  QRLAEHVD--VYDITVNEHHNFMLENGCI----VHNSIDGDPAAAMRYTEARLSTIAEEL 652

Query: 144  LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
            L  +D++ VDFRD ++    EP V P   PNLL NG +GIAVGMAT+IP HN++E+C+A 
Sbjct: 653  LFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNGAAGIAVGMATNIPPHNLKELCDAI 712

Query: 204  LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            + LIDNPE+++E+L++ I GPDFPT G  +   E I+ +Y  GRG   +RA+  +EE  R
Sbjct: 713  IYLIDNPEVTVEELIKIIPGPDFPTAG-NILGTEGILAAYGTGRGQITLRAKAHIEEANR 771

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            G++ IVVTE+PYQV K+RL E+IAEL   K+I  + D+RDES      ++    +   P 
Sbjct: 772  GAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIRDVRDESDRAGMRLVILLKQDAQPK 831

Query: 324  LLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             ++ +++  + M+T F +NM  L    R P+V+ L  +L+E++AHR+EV+ RR+ + ++ 
Sbjct: 832  RVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLKRMLQEYVAHRQEVIRRRTEYDLEK 891

Query: 383  IDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSL 439
               R  IL+GL IA  NID II  IR     +  +  ++S FSL+E Q  AIL+++LR L
Sbjct: 892  ARARAHILEGLKIALDNIDAIIRTIRESRSVEIARNNLISNFSLSEIQAQAILDMQLRRL 951

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
              LE  +I+ E   ++    +++ +L + ++    I  +++ +KE +        RRT  
Sbjct: 952  AALERKKIEDEYAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDE-----RRTRI 1006

Query: 500  CEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSL 551
                 A      + +I    + + +++RG+++          +     + A+  +E D +
Sbjct: 1007 I--PDASGEVSDEDLIPDVRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDLV 1064

Query: 552  KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +  L   + D +L  +  GK Y L A  +   +    G  +  LI L+  + + +     
Sbjct: 1065 RHLLTCGSHDNLLFFTDKGKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAVP 1124

Query: 610  --STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666
                  L++ + +G     + SE       G   + +   + +  V    G + V +   
Sbjct: 1125 DYDGEYLVMATHRGKIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTV 1184

Query: 667  NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSEN 724
              + + F    +  M R   GV   +  +G    VI  ++       +    R + +   
Sbjct: 1185 KGQTIRFQQQAVRSMGRPATGVNGINLSEG--DRVISMELAIPDSDLLVVTARGFGKRTE 1242

Query: 725  DLLGWLGKRGGVGSLVPK 742
                    R   G +  +
Sbjct: 1243 LGDYPTKGRATGGVITIR 1260



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 81/109 (74%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           VK VS+   +   YL+YA+S I  RA+PD RDG KPV RRI++ M +MG     A+KKSA
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           RIVG+V+GK+HPHGD SVYD+L RLAQP+  RYPLI GQGNFG   GD+
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGDT 114



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 78/206 (37%), Gaps = 15/206 (7%)

Query: 517  KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
                 V+ ++RG I+  +           L A+  +EGD L     ++  + +L+ +  G
Sbjct: 1127 DGEYLVMATHRGKIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTVKG 1186

Query: 571  KAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            +          + R  G     +  I+L+    +++  +      LLVV+++G     E 
Sbjct: 1187 QTIR---FQQQAVRSMGRPATGVNGINLSEGDRVISMELAIPDSDLLVVTARGFGKRTEL 1243

Query: 629  SEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMSRGK 685
             +     R   G   +++   +++     V    +   V     ++  S  +I ++SR  
Sbjct: 1244 GDYPTKGRATGGVITIRLRPGDEVAGAAIVNQRSLLTFVTAAGVVMRTSAGEISQLSRAT 1303

Query: 686  -GVRLQSYKDGGISDVICFKICEGLT 710
             GV + +  DG     +  +  +  T
Sbjct: 1304 QGVTVVNPDDGDRVAALSVEEPDEDT 1329


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/730 (32%), Positives = 390/730 (53%), Gaps = 31/730 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            +  +   +E +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMG
Sbjct: 8   TTAPDQDFQERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMG 67

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VGEV+GKLHPHGD ++YD+LVR+AQPF  R PL+ G GNFG+ D D+
Sbjct: 68  LRPDRGHVKSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSPD-DA 126

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A L++Q +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGIAV
Sbjct: 127 PAAMRYTEARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGASGIAV 186

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+  AA  L+  P+ ++++L++++ GPD PTGG+I+   ++I E+Y  
Sbjct: 187 GMATNIPPHNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLII-GLDAIREAYET 245

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR+RAR  +E V      IVVTE+P+ V   R++ KI EL+ AK++  + D++D +
Sbjct: 246 GRGTFRMRARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLKDLT 305

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++E ++ L+ ME  F +N   L  G+ P+ + L  +L  +
Sbjct: 306 DRHKGLRLVIEVKTGFNPEAVLEELYRLTPMEETFGINSVALVDGQ-PRTLGLRDLLAVY 364

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421
           + HR EV+ RRS++R +  + R+ +++GL+ A LNIDE+I +IR  D P   +  ++  F
Sbjct: 365 VNHRLEVVRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLMETF 424

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L + ++ +++ E + L AE  +++++L S  +    ++ E+ E
Sbjct: 425 GLSEAQAGYILDTPLRRLTRYDKLELEREKEGLQAEIAELNAILGSEDRLRRVVSKELAE 484

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + +        RRT   + + A   T     +  +P  V++S+ G I      S    
Sbjct: 485 VAKKYGTP-----RRTQLLDSAEAALKTAIPLEVADDPCLVLLSSTGLIARTADASPLPG 539

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG--------EAIQLL 593
                  D L  A+       + ++++ G+   +    L +    G        + +   
Sbjct: 540 DGPRAPHDVLVSAVRTTVRGEVGVITSKGRMIRVSVVELPTLPASGDPPSLAGAQPVTEY 599

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D     + + +++G    V         R     + +   +++  
Sbjct: 600 VTLEPDEHVVGLGSLDEAGHGIALGTAQGVVKRVAPD--YPVNRDDFEIISLREGDRVVG 657

Query: 653 VVKVTG-DHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI---CFKIC 706
            V++   DH  V +  + +LL F    +    R   GV      +G  + VI        
Sbjct: 658 AVELESPDHDLVFITSDAQLLRFPAATVRPQGRPAGGVAGIRLAEG--ARVIWFGAVDPA 715

Query: 707 EGLTWIDSAG 716
                +  AG
Sbjct: 716 RESRVVTVAG 725


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/792 (30%), Positives = 375/792 (47%), Gaps = 111/792 (14%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS  G D G  +KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PLI GQGNFG+
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD  A+ RYTEAR+ +V+  +L  +DED VDFR  Y+  ++EPVV P++FPNLL NG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SG+AVGMAT+IPSHN+ EI +A +  +DNPE+++++LLE + GPDFPTGG I+  R  I 
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            ++  GRG   V+ +  +E++ +    IV+ EIPYQV K +LIEKI EL+  KRI  + +
Sbjct: 180 SAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITE 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           IRDES +    V+    R+ +   ++  I  L+ + + F +N  VL+  R   +M L  I
Sbjct: 240 IRDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPA-LMSLKEI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419
           ++ ++  R+EVL RR+ FR++    +  I  GL IA L+IDE+I IIR    P       
Sbjct: 299 IEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASREL 358

Query: 420 ----------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                                        + LTE Q+ AIL+++L+ L  LE+ ++++EL
Sbjct: 359 LNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAEL 418

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
            +++   ++  + L SG++   +I   ++E+K  F+        R T  E S  D     
Sbjct: 419 SSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEES--DTDIEA 470

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRI 563
           + +I +E + + ++  G+I+ +K                   KE D +      +T   +
Sbjct: 471 EDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSV 530

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV 617
           L  S  G+ Y L    L        G A+  +  L   + I          D    ++  
Sbjct: 531 LFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFT 590

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID 676
           ++ GN      ++       GK  +K+   +K+  V      DHV +     K + F + 
Sbjct: 591 TAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVS 650

Query: 677 QIPE-MSRGK-GVRLQSYKDGGISDVICFKICEGLTW----------------------- 711
            + +  SR   GVR           VI   I  G+                         
Sbjct: 651 DVRQFKSRNSDGVRGIKL--AKNDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINN 708

Query: 712 ------------------------------IDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
                                         +      + +  +     +  RGGVG    
Sbjct: 709 SIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNI 768

Query: 742 KGFPRSGKFLSS 753
               R+G  ++S
Sbjct: 769 LTTSRNGNVVAS 780



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L     +     V       +R  KS + D +  +
Sbjct: 612 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSD-----VRQFKSRNSDGVRGI 666

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 667 KLAKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 719

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 720 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVV 778

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S++ I    R  +GV L  +K      V+     E 
Sbjct: 779 ASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTL--FKTESREKVVSVAKIED 835


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 385/761 (50%), Gaps = 41/761 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ MSEMGL  
Sbjct: 11  PDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D   A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+   +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN++E+  AA  LI +P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGG-RIVGLSGIRDAYETGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D +  
Sbjct: 250 GTFKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR  V+ RRS FR      R+ +++GLL A L+IDE+I +IR   N  + K  ++ +FSL
Sbjct: 369 HRFTVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L K +  ++++E D L AE E++  +L S  +    ++ E+  V 
Sbjct: 429 SDVQTQYILDTPLRRLTKYDRIELETEKDRLNAEIEELTRILESDAELRKLVSSELATVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--VDLS 541
           + F        RRT   E S           +  +P  V++S+ G +    +     + +
Sbjct: 489 KKFGT-----DRRTDLLE-SGGAPVATVPLQVADDPCRVLLSSTGLLARTANGEPFAENA 542

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL 593
                + D +  A+ A     I  +++ G+   L   +L              G  +   
Sbjct: 543 GAKRVKHDVIVSAVPATARGEIGAVTSAGRLLRLNVIDLPQLPESMPTPNLAGGAPLAEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ +V     D +   L + + +G    V       + ++    + +   +++  
Sbjct: 603 LSLEDDETVVCLTTLDESSPGLAIGTEQGVVKRVVPD--YPSHKEELEVITLKEGDRIVG 660

Query: 653 VVKV-TGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------ISD 699
            V++ TGD  +  + ++ +LL +    +    R   GV      +G            +D
Sbjct: 661 AVELRTGDEDLVFITDDAQLLRYQASVVRPQGRPAGGVAGIKLAEGVKVISFTAVDPAAD 720

Query: 700 VICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSL 739
            + F +      +D + ++    +  D     G R   G  
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 760


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 177/649 (27%), Positives = 310/649 (47%), Gaps = 38/649 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 191  IPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            +P HN++E+ EA    +DN E   E     + E + GPDFPT G+IV S + I ++Y+ G
Sbjct: 611  MPPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYGLIVGS-QGIDDTYKTG 669

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
            RG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S+
Sbjct: 670  RGSIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSS 729

Query: 307  ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            +     ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 730  DRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRHYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+IR        +  ++    
Sbjct: 789  NHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIADLEDILAKPERQRAIVHDELKEI 908

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             + +        RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 909  VDKYGD-----DRRTRII---PADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D +       T D IL  +T G+ Y   A +L   S    G+ +  
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDLPEASRTARGQHVAN 1020

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G        +  +N   G   + +   ++
Sbjct: 1021 LLAFQPEERIAQVIQLKTYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDE 1080

Query: 650  MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V  +  D + +V    + + FS     +  M R   GV+   + +     ++   +
Sbjct: 1081 LVGAVLCSADDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEE--DQLLSLNV 1138

Query: 706  C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              EG   + +    Y +           RGG G L  +   R G  + +
Sbjct: 1139 VREGTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGA 1187



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/356 (23%), Positives = 143/356 (40%), Gaps = 26/356 (7%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDF--RDTYNEEDSEPVVFPSKFPNL----- 175
            D  AA RY       V     Q V    +    R   + +    V+     P +     
Sbjct: 122 NDPPAAMRYCVTGDAMVRLPFGQSVRIADIVKGARPNSDNDIDVKVLDRHGDPVVANALF 181

Query: 176 --------LANGTSGIAVGMATSIPSHNVQEICEAAL---ALIDNPEISIEKLLEYIIGP 224
                         G  V   ++ P   + ++         LI         +L+     
Sbjct: 182 HSGDHETFAVRTAEGYEVTGTSNHPLLCLVDVGGVPTLLWKLIGEIRPGDHVVLQRTPPV 241

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI- 283
           +F  G         ++ ++     GF   +R     + R  + +V+      V   R + 
Sbjct: 242 EFGPGDWREVMEALLLGAFISD--GFVSESRAGFNNLDRDYFNMVLAAYDAIVGGPRYVY 299

Query: 284 -EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             +IA       +    D+ +  A D   +   K++      +   ++  +    +
Sbjct: 300 ERRIASGSKLLEL----DVHNLRALDSSRLAELKSQRSAAKTVPNWLWNSTAAAKK 351



 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  +    D +      A++ ++GD L  A
Sbjct: 1025 QPEERIAQVIQLKTYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDELVGA 1084

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +     D +LL+S  G++    A +  + R  G A   +  +  N    +++  V     
Sbjct: 1085 VLCSADDDLLLVSAKGQSIRFSATD-EALRPMGRATSGVQGMRFNEEDQLLSLNVVREGT 1143

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
             LLV +S G A      E  A  R GK  L +  + +   +   + V  D  +  +    
Sbjct: 1144 YLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGALIVDDDTELYAITSGG 1203

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             ++  +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1204 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/771 (28%), Positives = 398/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +      Q + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQ-LGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 386/651 (59%), Gaps = 24/651 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  V +   ++  YL YA+S I  RA+PD+RDG KPVHRRI+++M EMGL    AFK
Sbjct: 7   KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F  RYP+I GQGNFG+IDGD  AA RYTE
Sbjct: 67  KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M ++ E I++ +D++ V+F+  Y++  SEP + PS FP LL NG+SGIAVGMAT++  
Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC+A + ++DN   SI  LL+ + GPDFPT G IV + ++++++Y+ G+G   +R
Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+ +EE       I+VTEIPY V KS L+ K+A L   +++  L DIRDES  +   ++
Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DP ++M  ++  ++ +  F +N   L  G +P+ + L+ +L E++ HR+ ++ 
Sbjct: 306 LEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNG-IPKQLNLEELLFEFIEHRKNIIE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR  F ++    +  +L+GL IA  NIDE+I II++       K  +VS F L+E Q ++
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQANS 424

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++RL+ L  LE ++++ EL+ LL+  +  + +L +  +  N I  E        +   
Sbjct: 425 VLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREE------TINLGL 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546
             G  R T          T    +++KE I V+++ +G+++ L  +   L     K    
Sbjct: 479 KFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSS 538

Query: 547 ----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
               +GD + IAL  +T D + ++S +GK Y + A  +   S    G+ I  LI+L   +
Sbjct: 539 FDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQE 598

Query: 601 DIVTA---FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           +I+T            LL+ ++ G     E ++  A   +G   +K++ ++
Sbjct: 599 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 649



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +++++   + D   K   +++++ KG    + ++E       GK        +  ++V+ 
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIA 550

Query: 656 V---TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD----GGISDVICFKICEG 708
           +   T D++ ++    KL + +  +I + SR    + Q+  +    G   +++  K  + 
Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS--KGQNISELINLGDQEEILTIKNSKD 608

Query: 709 LT------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           LT         ++G+       D           G +V K   + 
Sbjct: 609 LTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLNDKD 649


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/754 (27%), Positives = 384/754 (50%), Gaps = 28/754 (3%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +S     V++ +  +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + 
Sbjct: 2   QLSKEKISVDKKII-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKE 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G  +   ++KSA+ VG VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D
Sbjct: 61  GNLYSKPYRKSAKTVGNVIGNYHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDND 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR++ +A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+
Sbjct: 121 PAAAMRYTEARLSAIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGIS 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G AT IP HN++E+ +A +  I  P  S+EKL+E+I GPDFPTG I VE ++ I+ +++
Sbjct: 181 AGYATDIPPHNLEEVIDATIHRIKYPNCSLEKLMEFIKGPDFPTGAI-VEGKQGILNAFK 239

Query: 245 LGRGGFRVRARWC-VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   VR+    +EE       IV+TEIPY+V K+ L+ KI E+   + I  + ++RD
Sbjct: 240 SGRGKVIVRSTSEMIEEKTMNK--IVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRD 297

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES      ++    + ++    +  ++  +D++  +  NM  +   + P +M +  IL  
Sbjct: 298 ESDRTGLRIVIDLKKDINVQNTLNYLYKNTDLQKNYNYNMVAI-KDKRPVLMGVIEILDG 356

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR 420
           ++AH+ +V+ R S   +   + R  I++GL+ A   +DE++  IR        K  ++ +
Sbjct: 357 YIAHQIDVVTRSSIHDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEK 416

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +  +E Q +AI+ L+L  L   +   +++E   L      ++++LNS +     I  +++
Sbjct: 417 YGFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVIIDQLK 476

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +K+ +         R +       +    ++AMI  E I V I+  G+I+ + + S+  
Sbjct: 477 GIKKKY------PMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSIKA 530

Query: 541 SA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLID 595
           S       KE D L     A+T D +LL +  G    +P   +     +  G+ +  L+ 
Sbjct: 531 SEGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVK 590

Query: 596 LNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKM 650
           LN  + I+   +         +++ +  G        +    TR  K    + + +++++
Sbjct: 591 LNAGEKIIGTILVKDFNLPLYVMLATKNGQIKRTNLKDFE-VTRYSKPLKCMGLKNDDRV 649

Query: 651 KLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708
             V     +  + +  +     ++S  ++  +  +  G+R  + K+  +  +  F     
Sbjct: 650 VDVKLTDNNQGIILTTKAGYGALYSEQEVSIVGIKAAGIRAVNLKNDELVSLNIFNPLVS 709

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + I  +     +           R   G+L+ K
Sbjct: 710 SSLIVISEEGGVKRIKIGDITPCNRATKGTLLYK 743


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 209/752 (27%), Positives = 369/752 (49%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  +   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G+ID D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+ P+L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A   L+D+PE  +  L+ Y+ GPDFPTGGI ++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGGI-IQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I VTE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTAISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  + + ++  +F  +D++  +  NM  +   R   V  L   L+ +L  R+EV+
Sbjct: 300 VIELTKDANAEGILTYLFKKTDLQIAYNFNMVAIHDQRPVHV-GLKQGLQAFLGFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +RS++ +     R  I++GL+     +D+++A IR           ++++F  T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDQVVATIRASKNRRDATQNLITQFQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L A+ +++  ++N      + I  EI  +   +   
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINEASALNDVIRDEITAITTSY--- 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--HFKE 547
                +R +  E    D        I +E + V++S  G+ +     S   S       +
Sbjct: 476 ---RSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRSSIRSYKASDSDNGLAD 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVT 604
            D +      +TT  + + +  G     P   L     +  GE   Q L + + ++ ++ 
Sbjct: 533 DDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIQ 592

Query: 605 AFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV------K 655
           A V D+  +     +VS+ G       ++++    K KT + +  +     VV       
Sbjct: 593 AAVVDTLDQGGAFTIVSNDGFIKQTTLNDMLPKAYKKKTAMAIKLKTDASYVVNVSYFKA 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V ++  +   L F +  +PE+  R  GV+    +   +     F   +       
Sbjct: 653 TATPEVLLLSHHGIGLRFKLTDVPEIGPRTAGVKAMDLRGDDLIMAALFITDKTQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +        + KR   G L+     +
Sbjct: 713 ARNGAFKYMPISEINMSKRANKGLLIF--TQK 742


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/771 (28%), Positives = 394/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAI-DHMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F      G  R T            ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 F------GSARRTQIVEQYTKIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 397/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAI-DHMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 397/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +      Q + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQ-LGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLIFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/762 (29%), Positives = 381/762 (50%), Gaps = 43/762 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF  R PL+ G GNFG++  D   A
Sbjct: 71  DRGYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM     L+ + ++E+ VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGG-RIVGLSGIRDAYATGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   V+ V      ++VTE+P+ V   ++I KI +L+ AK++  + D++D +  
Sbjct: 250 GTFKIRATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSL 423
           HR EV+ RRS FR      R+ +++GLL A ++IDE+I +IR+ D   + K  ++ RF+L
Sbjct: 369 HRFEVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFAL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q   IL+  LR L + +  +++SE + L  E  ++  +L S  +    ++ E+  V 
Sbjct: 429 SDIQTQYILDTPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDL 540
           + F        RRT   E S    A +    +  +P  V++S+ G +    S    + D 
Sbjct: 489 KKFGTE-----RRTVLLESSGTQVAAVP-LQVADDPCRVLLSSTGLLARTASAEPFTADE 542

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQL 592
                K  D +  A+ A     +  +++ G+   L   +L              G  +  
Sbjct: 543 DGRRTKH-DVIVSAVPATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAE 601

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L   + +V     D +   L + + +G    V       + ++    + +   +++ 
Sbjct: 602 FLTLQDGETLVCLMTLDESSPGLAIGTEQGVVKRVVPD--YPSNKEELEVISLKEGDRIV 659

Query: 652 LVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------IS 698
             V  +   + +  + ++ +LL +   Q+    R   G+      +G             
Sbjct: 660 GAVELRTGEEDLIFITDDAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAV 719

Query: 699 DVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSL 739
           D + F +      +D + ++    +  D     G R   G  
Sbjct: 720 DAVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVR 760


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/752 (28%), Positives = 382/752 (50%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+ +++ ++LQ +D+  V     +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ S+  L++++ GPDFPTG I++   + I E+Y  GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVM-GTQGIKEAYETGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++E+      IV TEIP+ V K+ L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKRILSSYLEHEEDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  T NQ +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E   L    EK   LL+  K    +I  E+  VK+ F+  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L     +  G+ +   I L+ ++ I+ 
Sbjct: 535 DGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQIIR 594

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE----KMKLVV 654
            FV+DS       ++ ++ G    +E + +        +  T +K+ +++     + L+ 
Sbjct: 595 VFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLIN 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + ++I +IP    +  GV+  + KD            + L  + 
Sbjct: 655 PTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVDSKYLDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLSLVNKVSRAKRGVLVLR 746


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 199/755 (26%), Positives = 377/755 (49%), Gaps = 33/755 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM++ G  F   F+KS
Sbjct: 6   NIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQFRKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG V+G  HPHGD S+Y++LVR++Q +  R PLI   GN G+ID D  AA RYTEAR
Sbjct: 66  AKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +L+ +D++ VD    +++ + EP V P+ FPNLL NG +GI+ G AT IP HN
Sbjct: 126 LSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+ +P  S+E L+ ++ GPDFPTGGI ++  + I  +Y+ GRG   VR++
Sbjct: 186 LGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGGI-IQGVDGIKSAYKNGRGRIVVRSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +  +  G   I ++EIPY+V K+ L++KI E+ + K +  + ++RDES  D   +   
Sbjct: 245 TEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIAIE 304

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  +   ++  +   +D++  +  NM  +   R  +V  L   L+ +L H+ E++ +R
Sbjct: 305 LSKDANVQGILAYLLKKTDLQVTYNFNMVAIHNLRPERV-GLKTALQAFLDHQVEIITKR 363

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           + + ++    R  I+ GL+ A   +DE+IA IR+ +     K  +V ++  T  Q +AI+
Sbjct: 364 TEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQNLVDKYEFTLEQAEAIV 423

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +  Q+++E + L       +++L+  K    ++  E + +K+ ++     
Sbjct: 424 TLQLYRLTNTDVTQLQAEFEELSDRIMHFNAILSEPKVLRQELRQEFKSIKKEYNSP--- 480

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDS 550
              R T  E    +        +  E + V++S  G+++     S   S      ++ D 
Sbjct: 481 ---RLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVKRSSLRSFKASGDENGLRDDDE 537

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAFV 607
                  +T   + + +  G     P   L     +  GE + Q +     +++I+   +
Sbjct: 538 PLFIERVNTLQHMFIFTNKGHVIYRPIHELPEFKWKEPGEHLSQSVSGFISDEEIIHVEI 597

Query: 608 YDS----TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEE------KMKLVV 654
            +         L  ++ G        ++   +   ++   ++K+ +++      +   + 
Sbjct: 598 VNDINSLEGTWLSATNDGYIKQFNFEDLTPRSTYKKRSTVYMKLKADDSSIIGLEYLSIG 657

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWI 712
             +   V +  ++   L + + ++P    R  GV+  +  D   I ++      + L  I
Sbjct: 658 AASDRTVILTTKHAVGLRYDVTEVPLSGNRTAGVKAMNLADSDNIVNMSTATEKQALAII 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
               R   +        +  R   G  + +   + 
Sbjct: 718 TH--RGAFKWMPVSEIPITSRARKGVAIMRELKKD 750


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  + + +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/756 (30%), Positives = 388/756 (51%), Gaps = 43/756 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+ + +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG  +     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGG-RIVGLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +       
Sbjct: 261 RATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  V
Sbjct: 321 LVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFSV 379

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q 
Sbjct: 380 VRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQT 439

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + +  
Sbjct: 440 QYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYGT 499

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFKE 547
                 RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    +
Sbjct: 500 P-----RRTVLLESADTPVAAIP-LQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRAK 553

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGH----GEAIQLLIDLNHNQ 600
            D ++ A+ A     +  +++ G+   +   +L     G G     G  +   + L  ++
Sbjct: 554 HDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDE 613

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
            +V     D +   L + +++G    V   +  AN R+    + +   +++     ++  
Sbjct: 614 TLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPAN-REELEVITLREGDRIVGAAELRTG 671

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWI 712
            + +  + ++ +LL F    +    R   GV      DG  + V+ F +     +   + 
Sbjct: 672 EEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADG--AKVLSFDVVDPAVDAAVFT 729

Query: 713 DSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
            +  R             +  D     G R   G  
Sbjct: 730 VAGSRGTLDDSVQTTAKLTPFDQFPRKG-RATGGVR 764


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 397/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAI-DHMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/755 (33%), Positives = 396/755 (52%), Gaps = 40/755 (5%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSAR 77
             SL    + RYL YALS I  RA+PD+RDG KPV RRI++AM  ++ L   A ++KSA 
Sbjct: 35  DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+V+GK HPHGD ++YD++VRLAQ FV R PLI+G GNFG++DGD+ AA RYTEA++ 
Sbjct: 95  VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            +A  +L  + +  VDFR  Y+    EP+V PS+FPNLL NG+ GIAVGMATSIP HN+ 
Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A +ALI+N E++  +LL Y+ GPDFPTGG +  +++ +   Y  G+G  ++R  W 
Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274

Query: 258 VEEVGRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +EE          IV+T IPY +++  ++EKIAE+I++K++P L D+RDES  +VRIV+ 
Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGEVRIVME 334

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-----MGRVPQVMPLDGILKEWLAHRR 369
            K R  D  L+M  ++  + +     +N+  L          P+ + L  IL ++L  R 
Sbjct: 335 LK-RGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426
             + RR  F +  + RR+ IL+G    +  +DE+I IIR  +        ++ RF+L E 
Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNEE 453

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL L+L  L +LE   ++ +L    AE ++I+ LL S  ++W  +  E+ E+K   
Sbjct: 454 QTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIK--- 510

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                 G +R T    S  +     +  I  E   V++S +GW++ +     DL++   +
Sbjct: 511 ---GSYGEKRRTKVVGSIDEPEYQAEDFIVAEDANVILSAQGWVKRV-REVKDLASTRIR 566

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           EGDS+  A+   T   +   S  G  Y     ++    G+G+ +Q L  L   + ++   
Sbjct: 567 EGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALM 626

Query: 607 VYDSTC----------------KLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
            +D                     L ++  G  F          +TR G+ F K++  ++
Sbjct: 627 SFDPRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDE 686

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICE 707
           +  V  V G D V     +   L  +++++  +   GKG  +    +G         +  
Sbjct: 687 VLFVHAVDGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGP 746

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                    +     E       G+RG  G  V +
Sbjct: 747 SDVITVETEKGKTL-EIAASKIAGQRGTQGEPVAR 780


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/737 (35%), Positives = 416/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/752 (28%), Positives = 387/752 (51%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P  ++E L++Y+ GPDFPTG II+   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPNATLEDLMKYVKGPDFPTGAIIM-GTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKL----VV 654
            FV D   +    L+ ++ G    +E + +        +  T +K+ +++ + +    V 
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKNKDSLLVGVDAVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + K+            + +  + 
Sbjct: 655 PDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIVNYVLVDNKYVDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 746


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 397/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +  + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +      Q + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQ-LGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLTFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|333023996|ref|ZP_08452060.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
 gi|332743848|gb|EGJ74289.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071]
          Length = 822

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/756 (30%), Positives = 387/756 (51%), Gaps = 43/756 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG  +     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGG-RIVGLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +       
Sbjct: 261 RASVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREHGLR 320

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  V
Sbjct: 321 LVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFSV 379

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q 
Sbjct: 380 VRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQT 439

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + +  
Sbjct: 440 QYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYGT 499

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFKE 547
                 RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    +
Sbjct: 500 P-----RRTVLLESADTPVAAIP-LQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRAK 553

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGH----GEAIQLLIDLNHNQ 600
            D ++ A+ A     +  +++ G+   +   +L     G G     G  +   + L  ++
Sbjct: 554 HDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDE 613

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
            +V     D +   L + +++G    V   +  AN R+    + +   +++     ++  
Sbjct: 614 TLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPAN-REELEVITLREGDRIVGAAELRTG 671

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWI 712
            + +  + ++ +LL F    +    R   GV      DG  + V+ F +     +   + 
Sbjct: 672 EEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADG--AKVLSFDVVDPAVDAAVFT 729

Query: 713 DSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
            +  R             +  D     G R   G  
Sbjct: 730 VAGSRGTLDDSVQTTAKLTPFDQFPRKG-RATGGVR 764


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/763 (30%), Positives = 385/763 (50%), Gaps = 41/763 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGDQS+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI  PE  +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGG-RIVGLSGIKDAYAN 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE+V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  M L  +L+ +
Sbjct: 307 DRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTMGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I IIR+ D   + K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S       ++ E+  
Sbjct: 426 SLSEVQTQYILDTPLRRLTRFDRIELESERDRLTGEIDELTGILESDSALRKLVSAELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E +    A +   +   +P  V++S+ G + R+     + +
Sbjct: 486 VAKKFGTE-----RRTVLLESAGTSVAAVPLEV-ADDPCRVLLSSTGLLARTANGDPLPV 539

Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQ 591
                +   D +   + A     +  +++ G+   L   +L              G  + 
Sbjct: 540 EEGGARAKHDVIVSQVAATARADVGAVTSYGRLLRLAVIDLPQLPDTAAAPNLAGGAPVS 599

Query: 592 LLID-LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             +  L  ++ +V     D + + L + + +G    V   +  AN +     + +   ++
Sbjct: 600 EFLSGLEADETVVCLLSLDESSQGLALGTEQGVVKRV-VPDYPAN-KDELEVITLKEGDR 657

Query: 650 MKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD----------GG 696
           +   V  +   + +  + ++ +LL +   Q+    R   G+      +            
Sbjct: 658 IVGAVELRTGEEDLVFITDDAQLLRYPAGQVRPQGRPAGGMAGIKLAENAKVIHFSAVDP 717

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             D + F +      +D + RS   +  D     G R   G  
Sbjct: 718 ARDAVVFTVAGSHGTLDDSVRSGKLTPFDQYPRKG-RATGGVR 759


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 219/760 (28%), Positives = 374/760 (49%), Gaps = 42/760 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M  MGL       K
Sbjct: 7   EHIMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDRGHVK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           S+R+VG+V+G+LHPHGD ++YD++VRLAQ F  R P + G GNFG+ D D  AA RYTE 
Sbjct: 67  SSRVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   + ED VD    Y+    EP V P+  P+LL NG+SGIAVGMAT++  H
Sbjct: 126 RMAPAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATNMAPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+   A  L++NP+  +E+L+ YI GPD P GG IV   + I ++Y+ GRG FR RA
Sbjct: 186 NLNEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIV-GIDGIRQAYKTGRGIFRTRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
              +E V      I+ TE+PY     ++IEKI + + +K++  +  +++ +       ++
Sbjct: 245 TAHIENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGTRLV 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                + +P+ ++ +++  + +E  F +N   L     P+ M L  IL+ +L HRR V  
Sbjct: 305 VEVKNAFNPEAVLAALYQHTPLEESFGINNVALV-EGQPRTMGLKEILQVFLDHRRSVTK 363

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR  FR++    R+ +++GLLIA ++ID++IAIIR+ +        ++S F L++ Q D 
Sbjct: 364 RRCEFRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANRLISVFDLSQPQADY 423

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K  + ++++E ++L    +++ ++L S  +    I+ E+ +V   +    
Sbjct: 424 ILELRLRRLTKFSQIELETERNSLQETIDELLAILGSEDRMRQLISTELADVARQYGTP- 482

Query: 491 DLGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               RRT   E    +  KA   +  I  +P  V++S  G I  +             + 
Sbjct: 483 ----RRTVLLEADAVQKSKANAPKLKITDDPCRVLLSATGKIARIVGGEPPRREGPRAQH 538

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQLLIDLNHNQ 600
           D+L   +       I +++T G  + L   ++ +            G  +  L+ +  N+
Sbjct: 539 DALASVVSTTNLSDIGVVTTAGNIHRLNVLDIPAMPDTESAPSLAAGAQLTDLLLMEPNE 598

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658
           + +     + +  +L + +++G    V    +    +     + +   +++    V    
Sbjct: 599 EPLAIISLEESDTVLTLATAQGKIKRVA---LDPPNKSQFDAITLLDGDRVIGAGVSGDT 655

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-----GLTWI 712
           D + +V  + +LL F  + +    R G+G+      DG     +     +     G+  I
Sbjct: 656 DVIVLVTSDAQLLRFDANAVRPQGRSGQGIAGIRVADGAQVIALGIVPNDDLAGHGVVTI 715

Query: 713 DSAGRSY--------NRSENDLLGWLGKRGGVGSLVPKGF 744
            S+  +           +  D     G RG  G    +  
Sbjct: 716 ASSSDALPGTTAGSAKVTPLDRYPAKG-RGTGGVRAQRYL 754


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/752 (28%), Positives = 388/752 (51%), Gaps = 30/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E ++ + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  +   F
Sbjct: 3   TKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPF 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+A+ VG ++G  HPHGD S+Y +LV L+Q +  R PL+   GN G++DGD  AA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+R+++++ ++LQ +D+D V+    +++ + EP V P++FPNLL NG++GI+ G AT IP
Sbjct: 123 ESRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIP 182

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A + L+ +P+ ++E L++Y+ GPDFPTG II+   + I E+Y+ GRG  +V
Sbjct: 183 PHNLGEVIDATIYLLKHPDATLEDLMKYVKGPDFPTGAIIM-GTKGIKEAYKTGRGRIQV 241

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  ++++      IV TEIP+ V KS L++KI E+ + K I  + ++RDE+      +
Sbjct: 242 RAKTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSI 301

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D   ++  +F  +D++  +  NM  +      QV  L  IL  +L H  +V+
Sbjct: 302 VIELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQV-GLKHILISYLEHEVDVV 360

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            +R+ F +   + R+EI++GL+ A   +D++I  IR   N+   K  +++++  TE Q +
Sbjct: 361 TKRTKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTEKQAE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI++L+L  L   +  ++ +E D L    EK   LL+  K    +I  E+  VK+ FS  
Sbjct: 421 AIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFSNP 480

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
                 R T      A     ++A++  E + V+IS  G+++     S    D +     
Sbjct: 481 ------RRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNGLP 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604
           +GD +       T   + L +  G     P   L+  +    G+ +   I L++++ I+ 
Sbjct: 535 DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEKIIR 594

Query: 605 AFVYD---STCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKL----VV 654
            FV D   +    L+ ++ G    +E + +        +  T +K+ +++ + +    V 
Sbjct: 595 VFVLDKLSANINFLLATNDGYIKQLELANLQPTRTYKSRAMTAIKLKNKDSLLVGVDAVK 654

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWID 713
                 + +       + + I +IP    +  GV+  + K+            + +  + 
Sbjct: 655 PDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIVNYVLVDNKYVDLMH 714

Query: 714 SA---GRSYNRSENDLLGWLGKRGGVGSLVPK 742
                 R   +     L     R   G LV +
Sbjct: 715 VGLITQRGAFKQFKLKLVNKVSRAKRGVLVLR 746


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/767 (30%), Positives = 380/767 (49%), Gaps = 50/767 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  V +   ++  +L YA S I  RA+PD RDG KPVHRRI++  +EMGL
Sbjct: 8   TPPPGDFEERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                  K AR+VGEV+G+LHPHGD S+YD++VRLAQPF  R PLI G GNFG++  D  
Sbjct: 68  RPERGHVKCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE+R+T  +  +++ + ED VDF   Y+  + EP V PS FPNLL NG +GIAV
Sbjct: 128 PAAMRYTESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGG-RIVGLSGIRDAYES 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   +E V      IVVTE+PY V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGTFKIRATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ L+E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DREHGLRLVIEVKNGFVPEALLEQLYKLTPMEETFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR  V+ RRS FR +    R+ +++GLL+A ++IDE+IA+IR+ D     K  ++ RF
Sbjct: 366 VDHRFTVVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L + +  ++++E   LL E  ++  +L S  +  + ++ E+  
Sbjct: 426 GLSETQTAYILDTPLRRLTRFDRVELEAEQSKLLKEIAELTEILESDHKLRSVVSSELGS 485

Query: 482 VKEIFSKSTDLGRRRTTFCEV-SRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVD 539
           V + F        RRT   E  S    A      +  +P  V++S+ G + R+     V 
Sbjct: 486 VAKQFGTE-----RRTVLLEAGSVPSAALAVPLEVADDPCRVLLSSTGLLARTFDLKPVT 540

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL------SGRGHGEAIQLL 593
             +    + D L  A+ A     + L++T G+   LP  +L       +    G A+   
Sbjct: 541 EESAARAKHDVLASAVPATARGDVGLVTTAGRVLRLPVIDLPALPPGTAALSGGAAVSEF 600

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIV------EESEIIANTRKGKTFLKVSS 646
           + L   +  +     D +   L + + +G    V       + E           + +  
Sbjct: 601 LRLEDGERPIALTTLDESSPGLALGTVQGVVKRVVPEWPANKDEFE--------VIALKD 652

Query: 647 EEKMKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG------- 696
            + +   V  +   + +  +  + +LL +  +Q+    R   G+      DG        
Sbjct: 653 GDAVVGAVELRTGEEDLVFITSDAQLLRYQANQVRPQGRPAGGMAGIKLADGARVLSFGA 712

Query: 697 ---ISDVICFKICEGLTWIDSAGR-SYNRSENDLLGWLGKRGGVGSL 739
                D +   +      +    + S+  +  D     G R   G  
Sbjct: 713 VDPAQDAVVLSVAAATGTLAGEEQSSWKLTPFDQYPRKG-RATGGVR 758


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/756 (31%), Positives = 404/756 (53%), Gaps = 34/756 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E +  +++   +++ YL Y+LS I  RA+PD+RDG KPVHRRI+ A  E+GL    A 
Sbjct: 1   MKEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F QRY LI GQGNFG+IDGDSAAA RYT
Sbjct: 61  KKSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++T++AE +L  +D+  V+F D ++    EP V PSK PNLL NG+SGIAVGM+TSIP
Sbjct: 121 ETKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            HN+ E+ +A + L+D P   +E +++ ++ GPDFPTG   +   + I  +Y+ G+G   
Sbjct: 181 PHNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGA-SIIGNDGIKAAYQSGKGKIT 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+  +E+  R    +++TEIPYQV KS+LIE+IAEL+   +I  + D+RDES +    
Sbjct: 240 LRAKSKIEKKKRHKN-LIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++     + DP+L +  ++  ++++  F +N+  ++  + P VM L  IL  +L  R+E+
Sbjct: 299 IVIELKANADPELTLNRLYKYTNLQNNFRINLLAINDKK-PVVMGLLEILNHFLDFRKEI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQV 428
           +   S + +   + R  IL+GL  A   +D +I +IRN +  K     +V +  ++E Q 
Sbjct: 358 IKNHSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSEAKKEAKAKLVKKLKISERQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +IL ++L+ L  +E  ++++E  +L  + +   ++LN+ ++  + +  E++E+K+ FS 
Sbjct: 418 QSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNEEELKSVLRAELKEIKKKFSD 477

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                  R T      +     +  +I+++   + +S RG I+    +      L   + 
Sbjct: 478 P------RRTDIIADDSKAEITKNDLIKEKKAIISLSYRGIIKRNDEY----KNLRTAKN 527

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L   +   + D++L  S  G+ Y L   N+    G   GE +   + +  N+ I+   
Sbjct: 528 DYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGLATGENLSKYLQIPINESIIDLN 587

Query: 607 VYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           +               V+  G     E  E   N       +K+  E+++  V K     
Sbjct: 588 ILSKNKAKTKNKYYTFVTENGLIKRTEVDEYRTN-YSHIRAIKL-DEDQLVNVEKTDEAS 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGR 717
            + V+ +   L+ F         R   G R  +  K+  +     F+    +  I   GR
Sbjct: 646 DLIVISKKGYLIRFKGSSFSTTGRNTLGSRAINLIKNDKVLYFSTFENNSFIISISENGR 705

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +     ++      KR G G+ +     +S K   +
Sbjct: 706 ANKIKLSEFET--QKRNGKGNRIF--SNKSYKLAGA 737


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/771 (28%), Positives = 397/771 (51%), Gaps = 36/771 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAI-DHMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L         ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSA 542
           F  +     RRT   E  +      ++A++ +E + V++S  G+++     S    D + 
Sbjct: 480 FGSA-----RRTQIVEQYKK-IEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSAD 533

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
                GD +       T   + + +  G     P   L     R  G+ +   I L +++
Sbjct: 534 NGLPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDE 593

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKV 656
            I++ F     +S    L+ ++ G    V  S++    T K +  + +  ++    V+ V
Sbjct: 594 RIISVFDINNLNSDLIFLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMV 653

Query: 657 ------TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE-- 707
                 + + + +V  N   L F ++++P +  R  GV+  + K+     V         
Sbjct: 654 EQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVSAITFDPKC 713

Query: 708 ----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP-RSGKFLSS 753
                L  +   G       + +  +   R   GS++ +    +  + +++
Sbjct: 714 LNSLKLGIVTQRGAFKQLQVDLVNKFT--RAKRGSMILRELKTKPHRIVAA 762


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/756 (30%), Positives = 387/756 (51%), Gaps = 43/756 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  + +   ++  YL YA S I  RA+PD RDG KPV RRI++ M+EMGL     + 
Sbjct: 22  EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F  R PL+ G GNFG++  D   AA RYT
Sbjct: 82  KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E+RM   A L+   +DE+ VDF   Y+ ++ EP+  P+ +PNLL NG SGIAVGMAT++ 
Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L++Y+ GPD PTGG  +     I ++Y  GRG F+ 
Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGG-RIVGLAGIRDAYANGRGSFKT 260

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE V      +VVTE+P+ V   +++ KI +L+ +K++  + D++D +       
Sbjct: 261 RASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDREHGLR 320

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L HR  V
Sbjct: 321 LVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFSV 379

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K  ++  FSL+E Q 
Sbjct: 380 VRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQT 439

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  +++SE D L AE E++ ++L S  +    ++ E+  V + +  
Sbjct: 440 QYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYGT 499

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFKE 547
                 RRT   E +    A +    +  +P  V++S+ G I R+  +  +   +    +
Sbjct: 500 P-----RRTVLLESADTPVAAIP-LQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRAK 553

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGH----GEAIQLLIDLNHNQ 600
            D ++ A+ A     +  +++ G+   +   +L     G G     G  +   + L  ++
Sbjct: 554 HDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDE 613

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVT 657
            +V     D +   L + +++G    V   +  AN R+    + +   +++     ++  
Sbjct: 614 TLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPAN-REELEVITLREGDRIVGAAELRTG 671

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI----CEGLTWI 712
            + +  + ++ +LL F    +    R   GV      DG  + V+ F +     +   + 
Sbjct: 672 EEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADG--AKVLSFDVVDPAVDAAVFT 729

Query: 713 DSAGRSY---------NRSENDLLGWLGKRGGVGSL 739
            +  R             +  D     G R   G  
Sbjct: 730 VAGSRGTLDDSVQTTAKLTPFDQFPRKG-RATGGVR 764


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 373/732 (50%), Gaps = 30/732 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S S++ V E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL
Sbjct: 4   SRSSSPVSERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGL 63

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KSAR+VGEV+GKLHPHGD  +YD+LVRLAQ F  R PL+ G GNFG++D D  
Sbjct: 64  RPDRGHVKSARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGP 122

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A  + + +DED VDF   Y+ +  +P V P+ FPNLL NG +GIAVG
Sbjct: 123 AAPRYTEARLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVG 182

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++  HN+ E+  AA  L+ NP+ ++E+L+E++ GPD P+GGIIV   + I ++Y  G
Sbjct: 183 MATNMAPHNLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIV-GLDGIKDAYTNG 241

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG FR RA+  +E +G     IV+TE+PY V   R+IEKI + + AK++  + D+ D + 
Sbjct: 242 RGSFRTRAKSSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTD 301

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       DP  ++E ++ L+ +E  F +N   L  G+ PQ + L  +L+ ++
Sbjct: 302 RNNGLRLVIGIKTGFDPKAVLEQLYRLTPLEDSFGINNVALVDGQ-PQTLGLRDMLRVYI 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR  V+ RRS +R+     R+ +++GLLIA L+IDE+I +IR+ D     +  +   F 
Sbjct: 361 DHRIRVVTRRSEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQEVFD 420

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q + IL LRLR L K    ++++E D L AE  ++  LL S      Q+A E+   
Sbjct: 421 LSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLGSETLLRQQVAKELDAA 480

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------WIRSLKSH 536
            E +              +   A  A      I   P  V +S  G       I    + 
Sbjct: 481 AEAYGTPRRTLLLNGGPVQPRSAKAAAAADLQIADAPCRVYLSATGRMVRAELIADAPAG 540

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS------GRGHGEAI 590
            V       K  D+++ A+   T   I  +++ G+       +L S          G  +
Sbjct: 541 GVVPPTRRSKH-DAIRSAVDTTTRGEIGAVTSAGRLVRFSPVDLPSVPANSVQLAAGTKV 599

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
           +  + L   + +V          + + + +G    V  SE+   T+     + +   +++
Sbjct: 600 EQYLALAKGETVVALVPLSDGPTIALGTEQGVVKRVAASEL--GTKPEIEIIALRDGDRV 657

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE- 707
                   +  +  V  + +LL F    +    R   G+      DG  + VI F +   
Sbjct: 658 VGAAPAGDNAELVFVASDAQLLRFDASSVRPQGRSASGMAGIRLSDG--ARVIAFAVIGA 715

Query: 708 ---GLTWIDSAG 716
                  +  AG
Sbjct: 716 SAFDAVVVTVAG 727


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 175/649 (26%), Positives = 309/649 (47%), Gaps = 38/649 (5%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 191  IPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            +P HN++E+ EA    ++N     E ++E + E + GPDFPT G+IV S + I ++Y  G
Sbjct: 611  MPPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHGLIVGS-QGISDTYTTG 669

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305
            RG  R+R    +EE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+S 
Sbjct: 670  RGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSS 729

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                  ++    R     +++ +++  + ++T F  NM  +  G VP+ + LD +++ ++
Sbjct: 730  DRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYV 788

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR        +  ++    
Sbjct: 789  NHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIELLD 848

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E++E+
Sbjct: 849  IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRAIVHDELKEL 908

Query: 483  KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534
             + +        RRT       AD     + +I +E + V I+  G+         RS K
Sbjct: 909  VDKYGD-----DRRTRII---PADGDVADEDLIAREEVVVTITETGYAKRTKSDLYRSQK 960

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592
                 +     K+ D +       T D IL  +T G+ Y   A +L   S    G+ +  
Sbjct: 961  RGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYDLPEASRTARGQHVAN 1020

Query: 593  LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
            L+     + I        Y+    L++ +  G        +  +N   G   + +   ++
Sbjct: 1021 LLAFQPEERIAQVIQLKSYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDE 1080

Query: 650  MKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
            +   V  +  D + +V    + + FS     +  M R   GV+   + +     ++   +
Sbjct: 1081 LVGAVLCSAEDDLLLVSAKGQSIRFSATDEALRPMGRATSGVQGMRFNEE--DQLLSLNV 1138

Query: 706  C-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              E    + +    Y +           RGG G L  +   R G  + +
Sbjct: 1139 VREDTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGA 1187



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 2/175 (1%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMF 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G        KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRGHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAV--DFRDTYNEEDSEPVVFPSKFPNL 175
            D  AA RY     + V     Q V    V    R   + E    V+     P L
Sbjct: 122 NDPPAAMRYCLTGDSMVRLPFGQSVRIGDVVSGARPNSDNEIELKVLDRHGNPVL 176



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 501  EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIA 554
            +        +Q    E  P  V+ +  G ++  +    D +      A++ ++GD L  A
Sbjct: 1025 QPEERIAQVIQLKSYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGIVAVNLRDGDELVGA 1084

Query: 555  LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
            +     D +LL+S  G++    A +  + R  G A   +  +  N    +++  V     
Sbjct: 1085 VLCSAEDDLLLVSAKGQSIRFSATD-EALRPMGRATSGVQGMRFNEEDQLLSLNVVREDT 1143

Query: 613  KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
             LLV +S G A      E  A  R GK  L +  + +   +   + V  D  +  +    
Sbjct: 1144 YLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTLVGALIVDDDTELYAITSGG 1203

Query: 669  KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             ++  +  Q+ +  R  KGVRL +  +G     I      G + 
Sbjct: 1204 GVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDST 1247


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/737 (35%), Positives = 415/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +   ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQVLEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           +   +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NGNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 381/763 (49%), Gaps = 43/763 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGG-RIVGLTGIRDAYES 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRQHGLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR +V+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++  F
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEHF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L K +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTKFDRIELESERDRLNGEIDELTGILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           V + F        RRT   E S    A      +  +P  V++S+ G +    +    + 
Sbjct: 486 VAKKFGTP-----RRTVLLE-SAGTPAPAASLQVADDPCRVLLSSTGLLARTATGEPLVD 539

Query: 542 ALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQL 592
               + + D +  A+       +  +++ G+   L   +L              G  +  
Sbjct: 540 GRSRRSKHDVIVSAVLTTQRGEVGAVTSSGRLLRLSVIDLPQLPDTATTPNLAGGAPVAE 599

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            + L  ++ ++     D +   L + + +G    V   +  AN ++    + +   +++ 
Sbjct: 600 FLSLEADETLICLTTLDESSPGLALGTLQGVVKRV-VPDYPAN-KEELEVITLREGDRIV 657

Query: 652 LVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE- 707
              +     + +  +  + +LL +   Q+    R   G+      +G  ++VI F   + 
Sbjct: 658 GGAELHTGEEDLVFITSDAQLLRYPASQVRPQGRPAGGMTGIKLAEG--AEVISFTAVDP 715

Query: 708 --GLTWIDSAGRSYN---------RSENDLLGWLGKRGGVGSL 739
                    AG              +  D     G R   G  
Sbjct: 716 AGEAVVFTVAGSHGTLDDSIATAKLTPFDQYPRKG-RATGGVR 757


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 259/737 (35%), Positives = 414/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P  +IE++LE +  PD+P G  I+ S+E I + Y+ G G  R +A +   
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY- 250

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
                   +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+   
Sbjct: 251 ---DNHSNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +R+  L RR  
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D     + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++       TD G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------TDFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +   V+   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKIIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S  G AF++   ++I N   GK    +   + +   +    D  +  V    + +I    
Sbjct: 602 SESGKAFVIPAEDLITNKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSYKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/737 (31%), Positives = 389/737 (52%), Gaps = 25/737 (3%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   + ER+  Y+   I+ERA+PD RDG KPV RRI++AM   G  F    +KSA+ VG
Sbjct: 19  PLEEIMGERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNTFDHQHRKSAKTVG 78

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            VIG  HPHGD SVYD++VR++Q +  R PLI   GN G+ID D AAA RYTEAR+ ++A
Sbjct: 79  LVIGNYHPHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAAAMRYTEARLAKIA 138

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ +D+D V F   +++ ++EP V P++FP LL NG +GIA G AT+IP HN+ E+ 
Sbjct: 139 GTLLEDIDKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGYATNIPPHNLSEVI 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +  P+ S+E+L+E + GPDFPTGGI++  ++ IV+++  G+G   +RAR  +  
Sbjct: 199 DAAIYRMQRPKCSLEELMEILPGPDFPTGGIVM-GKKGIVDAFTTGKGRVVIRARTEI-V 256

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
            G+    I++ EIPY+V KS ++ K+ ++ +++ I  + DIRDE+      ++    +  
Sbjct: 257 TGKTCNQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRTGLRIVIDVKKDA 316

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP++++   +  +D++  +  NM  +   R  Q M L G+L  ++AHR EV+ RRS +  
Sbjct: 317 DPNVILNYFYKNTDLQIYYSYNMVSIVNKRPVQ-MGLIGMLDAFIAHREEVVLRRSRYLY 375

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
             ++ R  IL+GL+ A   +DE+IA+IR        K  +   F  +E Q +AI+ LRL 
Sbjct: 376 NKMEERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTESFGFSETQAEAIVTLRLY 435

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +   ++ E   L+ E E + ++L S     + +  E+RE+K+ ++        R 
Sbjct: 436 RLTSTDIVALREEFAQLVNEMEMLKTILESETVLKSVLIKELREIKKEYADP------RR 489

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIA 554
           +  +    +    + AMI  E + +  S  G+++ +   S   S       KEGD L   
Sbjct: 490 SEIQAEVEEIVIDKTAMIPNERVMITASRDGYVKRVSLRSYGASDNAMTGLKEGDVLVGQ 549

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YD 609
           L   T D +LL ++ G    LP   +     +  G  +   + ++ +  I+ A V   + 
Sbjct: 550 LEVDTLDTLLLFTSKGNYAHLPVYQIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFS 609

Query: 610 STCKLLVVSSKGNAFIVEESE-IIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGEN 667
           S   ++ VS +G       S+  +    K  T + +  +++M     V   + + ++  +
Sbjct: 610 SYAWIVTVSRRGQVKKTPISQWQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRS 669

Query: 668 RKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             +  +S D +P    + +GV+  +  KD  ++    +       W+ S   +  R +  
Sbjct: 670 GWISRYSSDLVPANGTKSQGVKALNLAKDDTLAAACSYSDERQSLWVLSDKGNMKRIKMS 729

Query: 726 LLGWLGKRGGVGSLVPK 742
            +   G R   G +V K
Sbjct: 730 DINVTG-RPVKGEIVVK 745


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/769 (32%), Positives = 398/769 (51%), Gaps = 46/769 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-M 64
           ++ +    E+ ++   +      RYL YA+S I+ RA+PD+RDG KPV RRI++ M E +
Sbjct: 1   MTENQ---EDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEEL 57

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            L   A  +K A+I G+  G  HPHG+QSVYD+LVRLAQ F  RYPL+ GQGNFG+I G 
Sbjct: 58  RLMADAKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGL 117

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RYTEAR+T +AE ++  +  D V+ R  Y+    EPVV P++FPNLL NGT+GIA
Sbjct: 118 PAAAERYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIA 177

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT++P HN++E+ EA + LI NPE S ++LL++I GPDFP GG ++  R++++  Y 
Sbjct: 178 VGMATNMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYE 237

Query: 245 LGRGGFRVRARWCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            GRG F+VRA W +  E+       +V+  +PY V+   L+ +I  +I ++++P L +  
Sbjct: 238 EGRGAFKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAA 297

Query: 303 DESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV----MPL 357
           DE+ +     V+    +  DP+ +M  ++  + +E  F  N  VL       +    +PL
Sbjct: 298 DETDDKHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             +L E+L  R +V+ +R  F++  +  R+ IL+GL I +  ID+ I IIRN +  +   
Sbjct: 358 HRLLGEFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDAC 417

Query: 418 VSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                   L E Q  AIL ++L  + +LE   + +EL+    E ++I  +L    + WN 
Sbjct: 418 DKLMAAFPLDEPQTMAILEMQLYRISQLEIDTVLAELNTKQKEADRITRILAKDDRIWNV 477

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+RE+ E F      G +R T    S       +   I +E   VV+S  GWI+ + 
Sbjct: 478 IEGELRELSEQF------GDKRRTTLGSSDEVTEFDESHYIVRENTNVVLSKDGWIKRVG 531

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594
                + +   +EGD +   L   T D ++  ++DG AYT+P   +    G+GE +    
Sbjct: 532 RLQS-VESTRVREGDQVLDVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHY 590

Query: 595 DLNHNQDIVTAFVYDS----------------TCKLLVVSSKGNAFIVEESEI-IANTRK 637
                  ++ A   D                    L V +++G    V       A+TR 
Sbjct: 591 KFKDGVQVIAAVTTDPRFTAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRS 650

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695
           G+ F K+   + +  V  +     V +V    +L+ FS+++IP +   GKGVR    ++ 
Sbjct: 651 GRKFCKLQEGDVVAKVELIVDQTSVFLVTREARLIHFSLEEIPVLSGAGKGVRGIRLEEK 710

Query: 696 GISDVICFKI----CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               V+   +     + L    +  +     +  +   L  RGG G  V
Sbjct: 711 EKDLVLGAALMSRPSDVLRLKLANEKELTCGQ--MKYALTTRGGKGVKV 757


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/769 (33%), Positives = 412/769 (53%), Gaps = 54/769 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75
           +    L      +YL YALS I  RAIPD+RDG KPV RRI+  M E + L F A  +KS
Sbjct: 44  IVDGDLAEHARRKYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKS 103

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A++VG+VIGK HPHGD +VYD++VR+AQ F  R PL+ GQGNFG+IDGDSAAAYRYTEA+
Sbjct: 104 AKVVGDVIGKYHPHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAK 163

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  ++  +  D V+FR TY+    EP+V P++FP LL NGT+GIAVGMATSIP HN
Sbjct: 164 LSKLAAELITEIKRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHN 223

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  A L LID P+ S+ K++  I GPDFPTGG +V  R+ +  +Y  G+G F++R  
Sbjct: 224 LGEVIRACLLLIDEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGS 283

Query: 256 WCVEEVGRGSW---------CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           W  +E                +V+TEIP+ VQKS L+E+I ++I++K++P++  ++D S 
Sbjct: 284 WKYQEGKETKQGRKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLST 343

Query: 307 EDVRIVLFPK-NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGI 360
           ED+R+ L       +DP+L+M  +F  + ++T   L++ VL+    P+V     + L  I
Sbjct: 344 EDIRVELELDPKSEVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSI 403

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           L+ +L  R + + RR  + ++ ++ R+ IL+G  + + ++D+ I IIR  +        +
Sbjct: 404 LRYFLDFRLQTVRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKL 463

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L++ Q DA+L  RL  L KLE  +I+ EL +   + ++I ++L S K+ W  +  
Sbjct: 464 IKAFELSDIQADAVLETRLYKLAKLEILKIEEELADKRKQAKRIRAILKSKKKLWGVVRD 523

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++ +   ++       RR T  +     +    ++ I +E   V+++  GWI+  +  +
Sbjct: 524 ELQALSGEYAD------RRRTRIDAEDLTEEFSAESFIVEEDAMVLVTRDGWIKRQR--N 575

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           V+L     +EGD+    +   T D ++L S  G AY +   ++ +  GHG  +Q L    
Sbjct: 576 VNLETTRMREGDAPLALVGGSTRDCVVLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFK 635

Query: 598 HNQDIVTAFV---------------------YDSTCKLLVVSSKGNAFIVEE-SEIIANT 635
             + +++                         D     L V+  G A           +T
Sbjct: 636 DGEKVISVTTTDPRFMLEFAEAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWPHREPST 695

Query: 636 RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693
           R G+ + K  + ++   V +V G D V  + +  KLL  ++  +  +   G+GV L    
Sbjct: 696 RSGRLYGKTKAGDEFVEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAGPGRGVTLIK-T 754

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           D     V  +K         S+G +    +      +  RGG G  + K
Sbjct: 755 DDKDGVVAVWKTSVSAEIKKSSGGTIKVVKG--KATVTNRGGKGRPLMK 801


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/767 (31%), Positives = 373/767 (48%), Gaps = 51/767 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  MS+MGL       K
Sbjct: 18  EKIVDIDVAQEMEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMGLRPDRGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD+LVR+AQPF  R P++ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVVGEVMGKLHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DGPAAPRYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A ++  G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMAT++  H
Sbjct: 137 RLAPAALVMTTGLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAVGMATNLAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ NP+ S+E L+ ++ GPD PTGG IV   E I ++YR GRG F+ RA
Sbjct: 197 NLIEVVAAARFLVANPKASLEDLMRFVPGPDLPTGGKIV-GLEGIRDAYRTGRGSFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
              VE V      +VVTE+PY V   ++IEKI E + AK++  +  + D +       ++
Sbjct: 256 TVRVENVTPKRKGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTDRSHGLRLV 315

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ ++E ++  + ME  F +N   L  G+ P+ + L  +L  W+ HR +V+ 
Sbjct: 316 IEIKTGFNPEAVLEQLYRYTPMEDSFGMNNVALVDGQ-PRTLGLREMLSVWVDHRIDVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RRS FR+     R+ +++GLL+A ++IDE+I +IR+ D            F L+E Q + 
Sbjct: 375 RRSQFRLTKRLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRLREVFDLSEAQSEY 434

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E   L+ E E++ ++L         ++ E+ EV +++    
Sbjct: 435 ILELRLRRLTKFSRIELEKEQSALVEEIEQLRAILGDDALLRRVVSDEMAEVAKVYGTP- 493

Query: 491 DLGRRRTTFCEVSRADKATLQ----------QAMIEKEPITVVISNRGWIRSLKSHSVDL 540
               RRT   + +      L              IE  P  V++S+ G +      +  +
Sbjct: 494 ----RRTILLDSAGGGVTGLPGPSSPRGAPVSLEIEDTPCWVLLSSTGLLARTSDETEPV 549

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQL 592
              H    D L   + A     +  L++ G+   L   +L +            G  +  
Sbjct: 550 RDDHRHAHDVLASGVLASVRAEVGALTSAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAE 609

Query: 593 LIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           +  L   + +VT          L + ++ G    V + ++    R     + +   + + 
Sbjct: 610 VCALEPGERLVTVVSLAEDAPTLALGTAAGVVKRVAQGDV--PNRDSWEVVALKPGDAVV 667

Query: 652 LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGKGVRLQS-YKDGGISDVICFKI---- 705
             V VT D   V V     LL F    +    R  G    +  K  G   V+ F      
Sbjct: 668 GAVPVTDDDELVFVSSEASLLHFPATAVRPQGRTAG--GMAGIKLAGDQRVVFFGAVRAG 725

Query: 706 -CEGLTWIDSAG--------RSYNRSENDLLGWLGK-RGGVGSLVPK 742
             E    +  AG        ++ +        + GK R   G    +
Sbjct: 726 QSEECAVVTVAGASDALPGTQTGSVKTTAFAAYPGKGRATGGVRAHR 772


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/779 (29%), Positives = 391/779 (50%), Gaps = 54/779 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E + ++SL   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MADERIVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  V+   +L+ +  D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +ALI NP +S EKLL+ + GPDFPTGG+++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTG-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+PYQ+ K+  IEK+AE +   ++  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +P+ ++  +   + ++  F   +  L  G+  Q + L  +L+++L
Sbjct: 300 DRDGMRVVVELRRDANPEQVLAQLHKRTALQNNFGAILLALVNGQPIQ-LSLRQMLQQFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            +R   + RR+ + ++  + R+E+++GL+ A  ++ ++I +I++       K  +     
Sbjct: 359 EYRELTMMRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMIQDARDAASAKASLQVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++E Q DA+L++ LR L  LE+  ++ EL+ L  E+ ++  LL+  K   + +  E++ +
Sbjct: 419 ISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSRLRHLLDDRKSLLDTLVSELKHL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           ++ ++       RRT   E      A    A      +              ++  + G 
Sbjct: 479 RKRYATP-----RRTALQEGGDELVAQRTAAQRPNTEMLRKQALANVSSDQQLLWQSDGI 533

Query: 530 IRSLKSHSVDLSALHFKEG-DSLKI------ALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +R +    +    LH  +  D           L      ++L  ++ G+   L      +
Sbjct: 534 LRLVTPQVLGR--LHLLDDLDFGDHGCSAKLLLPVQPEPQLLAFTSGGRVAALR-WEFAA 590

Query: 583 GRGHGEAIQLLIDLNHN---QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTR 636
            +     ++  +  + +   + +V   V    D    + ++SS G    +   ++   + 
Sbjct: 591 QQPG--PLERFLPDSVDGQAEQVVDVLVVPPADQDFSVGLLSSDGRFKRLAGQDLRELSG 648

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSY 692
           +  T LK+    +++ VV    GD +AV     ++L   +D   IP M R  +G  L   
Sbjct: 649 RATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDSTIPVMGRTAQGPVLMRL 708

Query: 693 KDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             G  I           +  I   G+      + L     +RG +G +  +   R+   
Sbjct: 709 LPGESIVGAAAVAAGGDVLLISQLGQLKRLGIDHL--RRCQRGAIGEIGLRFEQRNDAL 765


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 258/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ EI
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+  P+ +IE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +
Sbjct: 192 INACLQLLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+DES   E VRIVL+   
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSAT 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   ++  +   +D+E  F +NMN++ +   PQV  L  +LK+WL +R+  L RR  
Sbjct: 308 TKKNIKKIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + +RF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSDELQTRFTLSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  E+E ++  LNS  +  N +  E +++        D G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQIL------ADFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +    +   +A  ++ ++  E +T+++S  GWIR  K  ++D + L +K  D   +    
Sbjct: 482 SKVIAAEKAQALEEKDLMPSERVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  S  GKAY++    L S RG+GE I   I L+    I++    ++    L+ 
Sbjct: 542 NSNIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAEYFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676
           S  G  F++   ++I N   GK    +   + +   +    DH +  +    ++++    
Sbjct: 602 SESGKGFVIPAEDLITNKVTGK---NIFDADDVFKFIPFDQDHKMLAISSEGRIIVRDFS 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  F+  + LT   +AG+ + R  S+N    +  K 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/762 (30%), Positives = 385/762 (50%), Gaps = 40/762 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI+  M+EMGL
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM     L+ + +DED VDF+  Y+ ++ EP V P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI +P   +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGG-RIVGLTGIKDAYTA 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ AK++  + D++D +
Sbjct: 247 GRGSFKIRATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GL++A L+IDE+I IIR+ D   + K  +++ F
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAHF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E + + ++L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDKLNGEIDALTAILESDAELRKLVSSELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDL 540
           V + F        RRT   E S   +       +  +P  V++S+ G + R+  +  V++
Sbjct: 486 VAKKFGT-----DRRTVLLE-SAGSQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEI 539

Query: 541 SALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQ 591
           S    + + D +  A+ A     +  +++ G+   L   +L              G  I 
Sbjct: 540 SEDARRTKHDVIVSAVAATARGDVGAVTSTGRLLRLSVIDLPQLPDTHAEPNLSGGAQIS 599

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + L  +++++           L + + +G    V   +  AN +     + +   +++
Sbjct: 600 EFLTLEADEELICLTTLAEDSPGLAIGTLQGVVKRV-VPDYPAN-KDELEVITLKDGDRI 657

Query: 651 KLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI---------- 697
                ++   + +  +  + +LL +    +    R   G+       G            
Sbjct: 658 VGATELRTGEEDLVFITSDAQLLRYPAGSVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPA 717

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +D + F +      +D +  +   +  D     G R   G  
Sbjct: 718 ADAVVFTVAGSHGTLDDSVLTSKLTPFDQYPRKG-RATGGVR 758


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 378/763 (49%), Gaps = 41/763 (5%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +      EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS- 125
                + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG++  D  
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE +M     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG SGIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  LI  P+  +E L+ ++ GPD PTGG  +     I ++Y  
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGG-RIVGLSGIKDAYEN 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K++  + D++D +
Sbjct: 247 GRGTFKIRATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +
Sbjct: 307 DRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421
           L HR EV+ RRS FR      R+ +++GLL+A L+IDE+I +IR+ D   + K  ++ RF
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIERF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SL+E Q   IL+  LR L + +  +++SE D L  E +++  +L S  +    ++ E+  
Sbjct: 426 SLSEIQTQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDSELRKLVSAELAA 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--D 539
           V + F        RRT   E S           +   P  V++S+ G +    +      
Sbjct: 486 VAKKFGTE-----RRTVLLE-SAGTPVAAVPLEVADTPCRVLLSSTGLLARTANGEALPQ 539

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQ 591
                  + D +   + A     + ++++ G+   L   +L              G  + 
Sbjct: 540 EEGGARAKHDLIVSQVAATARADVGVVTSYGRLLRLSVIDLPQLPDTHAAPNLAGGAPVA 599

Query: 592 LLID-LNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
             +  L  ++ +V     D + + L + + +G    V   +  AN +     + +   ++
Sbjct: 600 EFLSGLEADEKVVCLTSLDESSQGLALGTEQGVVKRV-VPDYPAN-KDELEVITLKDGDR 657

Query: 650 MKLVV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD----------GG 696
           +   V  +   + +  + ++ +LL +   Q+    R   G+      D            
Sbjct: 658 IVGAVELRTGEEDLVFITDDTQLLRYPASQVRPQGRPAGGMAGIKLSDNTKVIHFSAVDP 717

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             D   F +      +D +  S   +  D     G R   G  
Sbjct: 718 ARDAFVFTVAGSHGTLDDSVTSGKLTPFDQYPRKG-RATGGVR 759


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/773 (29%), Positives = 368/773 (47%), Gaps = 51/773 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL  
Sbjct: 12  DTTPFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA
Sbjct: 72  DRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMA
Sbjct: 131 PRYTEARLAPAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI NP+ ++E L+ ++ GPD P+GG  +   + I ++Y  GRG
Sbjct: 191 TNMAPHNLVEVISAARHLIANPDATLEDLMRFVPGPDLPSGG-RIVGLDGIRDAYATGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +   
Sbjct: 250 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRK 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P  +++ ++  + ME  F +N   L  G+ PQ + L  +L  ++ H
Sbjct: 310 HGLRLVIELKNGFNPTAVLQQLYRYTPMEDSFGINNVTLVDGQ-PQTLGLVALLSVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LT
Sbjct: 369 RIDVVRRRTIFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++LNS +   + ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDQLRREIAELEAILNSEELLRSLVSDELEAISE 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ-------------AMIEKEPITVVISNRGWIR 531
                     RRT   E          +               I  +P   +++  G I 
Sbjct: 489 EHGTP-----RRTILLESEAVSPTVAAELAGSKKGKPAPLALEIADDPCWAILTASGQIG 543

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SG 583
              +      A    + D     +       I  +++ G+   L   ++           
Sbjct: 544 RTSNQEPLAEAGPRNKHDVFTSVVKTSARGEIAAITSQGRMLRLQVMDMPVLPPVAGLPN 603

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              G   +  + L   + +V     D    L + +S+G    V+        R+    + 
Sbjct: 604 MAGGVPAKDFLTLLKGETLVAFAPLDEV--LAIGTSQGVVKRVQPE--YPLNREDWEVIA 659

Query: 644 VSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           +  ++ +  V     D   +  +    +LL F+   +    R   G+       G     
Sbjct: 660 LKDKDFVVGVAPAAADDTELVFLTAQAQLLKFAASAVRPQGRTAGGMAGIKLAAGDRVAF 719

Query: 701 --ICFKICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPK 742
                   E    +  AG             +        +  R   G    +
Sbjct: 720 FGAVRDQDEAAVVVTIAGTNGALPGTAPGTAKVTAFSEYPVKGRATAGVRAHR 772


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/778 (29%), Positives = 379/778 (48%), Gaps = 46/778 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   E  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL  
Sbjct: 11  PDPSDERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 129 YRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  +A   +      D VDF + ++    EP V P++ P LL NG +GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A +AL+  PE+S EKLLE + GPDFPTGG ++     + ++Y  GR
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVLTG-SGLRDTYLYGR 249

Query: 248 GGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIR
Sbjct: 250 GSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIR 309

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  D   V+    R  +P+ ++  +   + +++ +   +  L  G+  Q + L  +L+
Sbjct: 310 DESDRDGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVHGKPIQ-LSLRQLLQ 368

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
           E+L +R   + RR+   ++  + R+E+++GL+ A   +  +I +I         K  +  
Sbjct: 369 EFLDYRELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARLQV 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + E Q DA+L + LR L  LE+  ++ E D+L  E+ ++  LL+      + +  E 
Sbjct: 429 HLDINERQADAVLAMPLRRLTGLEQESLRKEADDLRQERARLRHLLDERPALLDTMVAEF 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-----VVISNRGWIRSLK 534
           + +K+ F+       RRT   E      A    A      +        + + G +    
Sbjct: 489 KALKKRFATP-----RRTRLVEGGDELVAQRTAAQRPNTELLRQRAFEGLPSDGRLVIQA 543

Query: 535 SHSVDLSA------LHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
              V +        LH  E    GD+    ++ L   +   +L  +  G+   L      
Sbjct: 544 DGQVKVIGPQLLGRLHLDEPAPLGDNPSPARLILPISSRPALLAFTDAGRVALLR-WEF- 601

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKG 638
           +G+  G   + L +    + +V         +   + ++SS G    +  +E    + + 
Sbjct: 602 AGQNPGTLEKFLPEGMSGERVVQLLPLPQEAEGKSVGLLSSDGRFKRLPLAEFQDLSGRA 661

Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQSYK 693
            + LK+     +K VV    GD + V     +LL   +++  +P M R  +G V L+   
Sbjct: 662 TSILKLKEGVSLKRVVLCQDGDDLMVGSSTGRLLRLEVNEENLPVMGRNAQGPVLLRLLP 721

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
              +         +G  W+ +  +   +  +        RG +G +  +   R  + +
Sbjct: 722 GEEVIGAAAVN-TDGAVWV-ATRQGSIKQLDASDIRQCHRGDIGQICIRFGQRDDQVV 777



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 68/178 (38%), Gaps = 16/178 (8%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLS 567
              +     ++S+ G  + L             S L  KEG SLK  +     D +++ S
Sbjct: 630 QEAEGKSVGLLSSDGRFKRLPLAEFQDLSGRATSILKLKEGVSLKRVVLCQDGDDLMVGS 689

Query: 568 TDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + G+   L        ++     G  +  L+     ++++ A   ++   + V + +G+ 
Sbjct: 690 STGRLLRLEVNEENLPVMGRNAQGPVLLRLLP---GEEVIGAAAVNTDGAVWVATRQGSI 746

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG---ENRKLLIFSIDQI 678
             ++ S+I    R     + +   ++   VV +   + AV+G    + + +     ++
Sbjct: 747 KQLDASDIRQCHRGDIGQICIRFGQRDDQVVDLQSSNAAVLGALLSDGRSVRIDSAEL 804


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/777 (29%), Positives = 382/777 (49%), Gaps = 51/777 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     ++
Sbjct: 17  DGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE
Sbjct: 77  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 136

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            R+  +A   +L  +  D VDF   ++    EP V P++ P LL NG +GIAVGMAT+IP
Sbjct: 137 TRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIP 196

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +ALI  P++S EKL   + GPDFPTGG ++ S   + ++YRLGRG   +
Sbjct: 197 PHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLS-SGVRDTYRLGRGSIPM 255

Query: 253 RARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R    +EEV  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES  
Sbjct: 256 RGVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDR 315

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   V+    R  + D ++  +   + +++ F   +  L  G+  Q + L  +L+E+L +
Sbjct: 316 EGMRVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPVQ-LSLRRLLQEFLDY 374

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLT 424
           R   L RR+   ++  + R+E+++GL+ A   + E+IA+I           S   R  L+
Sbjct: 375 RELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRLDLS 434

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q DA+L + LR L  LE+  ++ E + L  E+ ++  LL+        +  E R +K+
Sbjct: 435 ERQADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKK 494

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGWIR 531
            +        RRT   E      A    A      +              V+I     ++
Sbjct: 495 RYGTP-----RRTRLVEGGDDLVAQRAAAARPNAELQRQQALEALASDSRVLIQADRAVK 549

Query: 532 SLKSHSVDLSALHFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            +    +    LH +E   L       ++ L   +  ++L  +TDG+   L      +G+
Sbjct: 550 IVTPQVLGR--LHLEEPAPLGEHPAPAQLLLTVASQPQVLAFTTDGRVAVLR-WEF-AGQ 605

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKT 640
             G   + L D      ++              + ++SS G    +   ++   + +  T
Sbjct: 606 QPGPLERFLPDSLEGASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAAT 665

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQS-YKDG 695
            LK+     ++ VV   +G  + V     ++L    + +Q+P M R  +G  L     D 
Sbjct: 666 VLKLKEGVTLQRVVPCRSGAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDE 725

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            I    C  +    + + ++ +   +          +RG +G +  +   R    ++
Sbjct: 726 QIVGAAC--VPASGSVLLASRQGQVKKLAVESLRRCERGDLGLIGIRFSQRGDALVA 780



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 17/182 (9%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSA-----LHFKEGDSLKIA 554
           E +   +    Q   +      ++S+ G  + L    + DLS      L  KEG +L+  
Sbjct: 619 EGASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRV 678

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
           +   +   +++ S+ G+   L A      L+     G  +  L+    ++ IV A    +
Sbjct: 679 VPCRSGAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLP---DEQIVGAACVPA 735

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDH---VAVVGE 666
           +  +L+ S +G    +    +    R     + +  S+    LV   +G+H     + GE
Sbjct: 736 SGSVLLASRQGQVKKLAVESLRRCERGDLGLIGIRFSQRGDALVALSSGEHPLVAVLAGE 795

Query: 667 NR 668
           NR
Sbjct: 796 NR 797


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/770 (32%), Positives = 404/770 (52%), Gaps = 47/770 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFK 73
           + ++ V +      RYL YA+S I  RA+PD+RDG KPV RRI++ M  ++ L   A  +
Sbjct: 22  DRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKPR 81

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHGD SVYD+LVRLAQ F  R PLI+GQGNFG+I G  AAA RYTE
Sbjct: 82  KCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARYTE 141

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +AE ++  +    V+ R  Y+    EPVV P++FPNLL NG  GIAVGMAT+IP 
Sbjct: 142 ARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNIPP 201

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A + LI + + ++ +L+++I GPDFP GG IV  + S+   Y+ GRG  +VR
Sbjct: 202 HNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVKVR 261

Query: 254 ARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
             W  E     +G   +VV  +PY V+   L+ +I  ++ ++++P L D+ DE+ + +  
Sbjct: 262 GEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKNGL 321

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP----LDGILKEWLA 366
            ++       DP+ +M  ++  +++E  F +NM  L       ++P    L  +L+ +L 
Sbjct: 322 KIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYFLD 381

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
            R   + +R  +++Q ++RR+ ILKG  I + ++D+ + +IR           +++ F L
Sbjct: 382 FRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMANFPL 441

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q  AIL L+L  + KLE   I+ EL    AE EKI  +L S K+ W  +  E++E+ 
Sbjct: 442 DEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELKELA 501

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSV 538
           + F        +R T    S        QA I +E   VV+S  GWI+ +     K  + 
Sbjct: 502 DEF------PEKRQTKLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLKTKEGTQ 555

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
           +L+    +EGDS+       T D ++  S+DG AYTLP   +    G+GE +     ++ 
Sbjct: 556 ELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSD 615

Query: 599 NQDIVTAFVYD---------------STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFL 642
              +V A   D                T  +L+V+ KG    +  S    A+T+ G+ + 
Sbjct: 616 GAVLVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYC 675

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--IS 698
           ++  ++++     V   + + +  ++ ++L   I++   +S  GKGV+    + G   I 
Sbjct: 676 RLGKDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIG 735

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            +   +  + L  I++AG+        +   +  RGG G        RSG
Sbjct: 736 VLQLTRPSDCLRVINTAGKKMT--FGQMKYGVTSRGGKGVKT---SQRSG 780


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/712 (31%), Positives = 382/712 (53%), Gaps = 30/712 (4%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             S     + E +  + +   +   +L YA S I +RA+PD RDG KPV RRI++ M+EM
Sbjct: 4   TTSRPPEDLAEKIIDIDVSEEMRGSFLEYAYSVIYQRALPDARDGMKPVQRRILYQMNEM 63

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       K AR+VG+V+G+LHPHGD ++YD+LVRL+QPF  R PL+ G GNFG++ GD
Sbjct: 64  GLRHDRGHVKCARVVGDVMGRLHPHGDTAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGD 123

Query: 125 SA-AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            A AA RYTEAR+ + AE ++  +DE+ VDFR  Y+ +++EP V P+ FPNLL NG SGI
Sbjct: 124 DAPAAMRYTEARLDRAAEQLVASIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGI 183

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  AA  LI +PE ++E+L E++ GPD PTGG IV   + I ++Y
Sbjct: 184 AVGMATNMAPHNLGEVVAAARHLIAHPEATLEELTEFVPGPDLPTGGTIV-GLDGIRDAY 242

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG F+ RA   +E+V      +VVTE+PY V   ++I +I EL+ +K++  + D++D
Sbjct: 243 RSGRGTFKTRATVSIEKVSARRTGLVVTELPYSVGPEKVISRIKELVQSKKLQGISDLKD 302

Query: 304 ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            +       ++       +P+ ++E ++ L+ ME  F +N   L  G+ PQ + L  +L+
Sbjct: 303 LTDRTQGLRLVIELKNGFNPEAVLEELYRLTPMEESFGINNVALVDGQ-PQTLGLRELLE 361

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            ++ HR +V+ RRS FR      R+ ++ GLL+A L+ID +I++IR  +     +  ++ 
Sbjct: 362 VYVNHRLDVVRRRSEFRRAKRQERLHLVDGLLVALLDIDRVISLIREAEDTAAARESLMG 421

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + L+E Q   IL   LR L + +  ++++E D L  E + + ++L S K+    ++ E+
Sbjct: 422 AYDLSEIQARYILETPLRRLTRFDRMELETERDKLNKEVDALTAVLESDKKLRRLVSKEM 481

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +V + F+       RRT   E     ++ +    +  +P  V++   G I   K  SV 
Sbjct: 482 GDVAKEFATP-----RRTQLRESDGVARSAVIPLEMADQPCHVLMGVHGAIGRSKGPSVP 536

Query: 540 L--SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---------GRGHGE 588
                L  +  D++ +++   +   + L++  G+   +P   L               G 
Sbjct: 537 RVYEGLRTRH-DAVHVSVPTTSRSAVGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGL 595

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +   + L+ ++ +V+    D++     + +  G    V  S      +     + +  +
Sbjct: 596 DVSEFVQLDGDERVVSVVSMDASGPGFALGTRGGVVKRV--SPDYPPNKDDFEVVALKDD 653

Query: 648 EKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +++  V +++   + +A +    +LL FS   +    R   GV      +G 
Sbjct: 654 DRVVGVTQLSTGEEDLAFITSEAQLLRFSASAVRPQGRPAGGVAGVRLSEGA 705


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/771 (30%), Positives = 387/771 (50%), Gaps = 51/771 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            +      EE +  + +   ++  +L Y+ S I  RA+PD RDG KPV RRI++  +E+G
Sbjct: 7   TTPPPEDFEEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELG 66

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +       KS RIVGEV+GK HPHGD ++YD+LVR+AQPF  R PLI G GNFG++D D 
Sbjct: 67  VRPDRGHVKSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DG 125

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+ + A L++ G+DE+ VDF   Y++   +P V P+ FPNLL NG SGIAV
Sbjct: 126 PAAARYTEARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAV 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN+ E+  AA  LI NP  S+++L++++ GPD P GG  +   E I ++Y  
Sbjct: 186 GMATNMAPHNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGG-RIVGLEGIRDAYLT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG FR RA   +E +      IVVTE+PY V   ++IEKI +L+ +K++  + D++D S
Sbjct: 245 GRGSFRTRATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLS 304

Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +PD ++E ++ L+ ME  F +N   L     P+ + L  +L+ +
Sbjct: 305 DRGHGLRLVIEVKNGFNPDAVLEQLYRLTPMEENFGINNVALV-EGQPRTLGLKQLLQVY 363

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           +  R +V+ RR+  R+   + R+ +++GLLIA ++IDE+I +IR+ D     K  ++  F
Sbjct: 364 VDFRTDVVRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLMDVF 423

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L++ Q   IL+L+LR L +    +++SE   L  + E++ +LL S +     ++ E+ E
Sbjct: 424 DLSDPQATYILDLQLRRLTRFSRIELESEKSELERQIEELRALLESDRLLLKLVSTELAE 483

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWI-RSLKSHSV 538
           V +          RRT   E S   + T     +E   +P  V++S+ G + R++    V
Sbjct: 484 VAKKHGTP-----RRTVLLESSGQARPTTTATPLEITDDPCWVLLSSTGLLARTVGPEPV 538

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAI 590
                  +  D+L  A+       + L++T G+   L A  L            G G  +
Sbjct: 539 TAEGSRSRH-DALVGAVRTTARGELGLVTTSGRMVRLSALELPTLPPTNGAPSLGGGAPL 597

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGK--TFLKVSSE 647
              +DL  +++ +T     +   ++ + ++ G    V        T KG   + + +   
Sbjct: 598 AAYVDLAKDEEPLTIVPIGAEAPVVALGTASGVVKRVSPD-----TPKGTDWSLISLKDG 652

Query: 648 EKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701
           +++        D   +  +  + +LL F+   +    R      GV+L +        V+
Sbjct: 653 DRVVGAAVADRDDLDLVFITSDAQLLRFAAKTVRPQGRSAGGMAGVKLAAGASAVFFGVV 712

Query: 702 CFKICEGLTWIDSAG----------RSYNRSENDLLGWLGKRGGVGSLVPK 742
                     + SAG           +   +        G R   G    +
Sbjct: 713 --DPSSDGVVVTSAGSSGALPGTEAGTLKVTPYSEYPPKG-RATGGVRCHR 760


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 264/756 (34%), Positives = 433/756 (57%), Gaps = 40/756 (5%)

Query: 21   SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
                   E Y +Y L  + +RAIPD+RDG KPVHRRI++AM  + L      KKSAR+VG
Sbjct: 685  PFETVFRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVG 744

Query: 81   EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            +VIGK HPHGD +VY ++VR+AQP+V RYPLI GQGNFG+IDGDSAAA RYTEARMT +A
Sbjct: 745  DVIGKYHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIA 804

Query: 141  ELILQ-GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG-IAVGMATSIPSHNVQE 198
            E IL   + +    ++  Y+++D EP+V P+ FP ++ N ++G  AVG  T IPSHN+ E
Sbjct: 805  EAILSGDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTE 864

Query: 199  ICEAALALIDNP--------EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            +  A +AL                  + ++I  PDFP GGII  + E +   Y  G G  
Sbjct: 865  LLGACIALAKKRGRTGAMESPTDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKM 924

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI------AELIIAKRIPLLEDIRDE 304
             +R++W VE + +G W IVVTEIPY ++KS L+ ++        +  ++++P+++D+RDE
Sbjct: 925  LLRSKWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDE 984

Query: 305  SA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR---------VPQ 353
            S+  + +RIVLFPK+R+LDP+ +M  +F  ++++         L             +P 
Sbjct: 985  SSAEDGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPS 1044

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + PLD +++ +L +R+E++  R+  R+  I  R+ IL GLL+AY NI EI+ II + D+P
Sbjct: 1045 LFPLDKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEIILDNDEP 1104

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            +P+++ ++SLTE Q DAIL +RL  LRKLE+ +++ E D L  E   +  +L+    +W 
Sbjct: 1105 RPIIMEKYSLTEIQTDAILAIRLSQLRKLEQMKLQGEHDRLSEEAAGLHQVLDDDAHRWK 1164

Query: 474  QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             I  E+R+  + F        RRT     +   +   ++ ++ +EP+T ++S +GW++ +
Sbjct: 1165 HITGELRDALKKFGDE-----RRTIVDPDAPKSRPMSREQIVSREPVTAILSKQGWLKGM 1219

Query: 534  KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
            +  S+D+S++ F+E D L  +   HTTD+++L+   G+A+++ A +L SGRG+GE +   
Sbjct: 1220 RGSSIDVSSVRFRESDKLLDSAAGHTTDQLILIGRTGRAFSMLAADLPSGRGNGEPVSKH 1279

Query: 594  IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
               + N+      +     + LV ++ G+AF    S++++  +KGK F+   +  ++  +
Sbjct: 1280 FVFSINEAPTRMVMVKPDAEYLVATTAGHAFRAMGSDMVSANKKGKAFINFPASSRLLCI 1339

Query: 654  VKVTGDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG--GISDVICFKICEGL 709
             ++   H   A +    ++ +   D+ P + +GKG+   + K G  G+ D     + EG+
Sbjct: 1340 REIEAAHDAFAFIDSYGRMAVILKDEFPLLGKGKGLTAVAMKKGSKGLRDAAPITLKEGI 1399

Query: 710  TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
                    +   +E     +L  R       PK  P
Sbjct: 1400 RVGTKKRATTITTEEIEAEYLVPRA----KAPKSLP 1431


>gi|308177798|ref|YP_003917204.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 240/780 (30%), Positives = 384/780 (49%), Gaps = 49/780 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M             EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MARKKSEEIPEDFVENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL       KSAR+VGEV+GKLHPHGD ++YD++VRLAQ F  R PLI G GNFG+
Sbjct: 61  MAQMGLRPEKGHVKSARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED V+F   Y+ +  +P V PS FPNLL NGT
Sbjct: 121 LD-DGPAAPRYTEARLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGT 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++  HN+ E+  AA  L+ +PE ++E+L+++I GPD P+GG  V   + I 
Sbjct: 180 TGIAVGMATNMAPHNLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGG-SVTGLDGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR RA   +E++      +VVTE+PY V   ++IEKI + +  K+I  + D
Sbjct: 239 DAYRTGRGLFRTRATVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISD 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++ S++  + ME  F +N   L  G+ P+ M L  
Sbjct: 299 VVDLTDRHHGLKLVIELKNGFNPNAVLASLYKYTPMEDSFGINNVALVNGQ-PRTMGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           +L  ++ HR +V+ RR++ R+   + R+ +++GLLIA ++ID++IAIIR+ +   + +  
Sbjct: 358 LLTVYVDHRLDVVRRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q   IL LRLR L K  + ++++E + L  E E++ ++L S +   N ++
Sbjct: 418 LMTVFDLSEPQASHILELRLRQLTKYSKLELETEAEQLRKEIEELRAILESDQLLRNLVS 477

Query: 477 CEIREVKEIFSKSTDL---------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            E+ ++ E F                 + T   E     K       +   P  V++S  
Sbjct: 478 DELGQMAETFGTPRRTKLLKSAQLAPLKGTALPEEVGTGKKAKLAMEVSDTPCWVLLSAT 537

Query: 528 GWI-RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---LPAGNLLSG 583
           G I R+     +D SA   K  D L   + +     I  L+T G+      +    L   
Sbjct: 538 GQIARTQDRTDLDHSAARIKH-DVLTSQVASSARGEIGALTTTGRIVRISLIDVPVLPES 596

Query: 584 RG-----HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTR 636
            G     HG  I   + L   + +      +     +V   +  G    V         R
Sbjct: 597 HGFPQLAHGVPIAEFLKLGQAETVAALVPLNQ----VVAIGTKNGVVKRVTPD--YPLNR 650

Query: 637 KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
                + +  ++ +         D +  + ++ +LL FS   +    R G+G+       
Sbjct: 651 DEFEAITLKDKDVVVAATPAQDADELVFITKHAQLLRFSASVVRAQGRTGQGMSGIKLGA 710

Query: 695 -----------GGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                      GG    +   I  G  T   ++G+S   ++       G R   G    +
Sbjct: 711 DDQVIFFGVVPGGSKQAVVATIAAGSQTLPGTSGQSVKLTDFSEFPVKG-RATAGVRAHR 769


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/729 (34%), Positives = 403/729 (55%), Gaps = 44/729 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   +++ Y+ YA+S I  RAIPD RDG KPV RRI++AM +MGL     F KSA
Sbjct: 3   ITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKSA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG V+G  HPHGDQ+VYD+LVR+AQ F  RYPLISGQGNFG+IDGD  AA RY+EA++
Sbjct: 63  RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAKL 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++VA  +L+ ++E+ VDF   ++    EP + PSKFPN+L NG+SGIAVG+ATSIP HN+
Sbjct: 123 SKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHNL 182

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           +E+C A + L  NP IS E++++ I GPDFPTGGI VE+ + ++E Y  GRG  RVRA+ 
Sbjct: 183 KEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGI-VENYQELIEYYHTGRGHVRVRAKA 241

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            VE++  G   IV+TEIPYQV K+ LI+++AEL+   ++  + +IRDES ++   ++   
Sbjct: 242 HVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIEL 301

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R      ++E ++  + +   FP+N  VL   +  QV  +  +L+E+L HR EV+ RR+
Sbjct: 302 KRDAQGQKVLEKLYKHTALRKNFPINFVVLIDNQPKQV-GIKELLQEFLRHRLEVILRRA 360

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
              ++  + R+ I++GL  A  ++D++I  IR+       K  ++  ++L+E Q +A+L+
Sbjct: 361 KHHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMKNYTLSERQANAVLD 420

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL+ L  LE  +++ E   L+   E    L++S +++      E+ E+ + F       
Sbjct: 421 MRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSEEERIKVFIQEMEEIVKEF------P 474

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
             R +F      +         E   ITV+I + G I  L+           +E   +  
Sbjct: 475 SPRRSFVLGFENE---------EVGQITVIIYSNGKIMPLE---------EMQEEGQVVD 516

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-YDSTC 612
            L    ++ + ++S  G+ Y +     L G         +     ++ +V AFV   ++ 
Sbjct: 517 VLDVPFSEGLFMVSNRGRVYWIAGSQALQG-------SKVSFKEADESVVGAFVRSQASH 569

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGD-HVAVVGENRKL 670
           ++++++ +G    +   +    T +G + +K S  E+++  V++   +  + ++    K+
Sbjct: 570 RIILITKRGYVKKIPIVDFEYKT-QGMSIIKFSEEEDEVVKVLQSPEEGDILLLTRKGKM 628

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F I  IP  + G KGV     + D  +           L  I   G     +  D+  
Sbjct: 629 LRFPIRDIPPATVGSKGVIGIKLEGDDTLISARAITDFPYLLLITQKGAVKKINAKDIPA 688

Query: 729 WLGKRGGVG 737
               RG  G
Sbjct: 689 R--GRGSKG 695



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---- 529
            +  +   VK+I     +   +  +  + S  +   ++     +E   ++++ +G     
Sbjct: 572 ILITKRGYVKKIPIVDFEYKTQGMSIIKFSEEEDEVVKVLQSPEEGDILLLTRKGKMLRF 631

Query: 530 -IRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
            IR +   +V       +  +  D+L  A        +LL++  G    + A ++ +   
Sbjct: 632 PIRDIPPATVGSKGVIGIKLEGDDTLISARAITDFPYLLLITQKGAVKKINAKDIPARGR 691

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
             + +        +   V       + +L++ + +G  F     E
Sbjct: 692 GSKGMTATARTKGDA--VDIVPIKESVELMIATQEGKVFYDRLEE 734


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/768 (30%), Positives = 373/768 (48%), Gaps = 52/768 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 138 RLAAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NPE ++E L+ ++ GPD PTGG  +   + I ++Y  GRG F+ RA
Sbjct: 198 NLVEVISAARHLIANPEATLEDLMRFVPGPDLPTGG-RIVGLDGIRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + +  K++  + DI D +       ++
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLV 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ +++ ++  S ME  F +N   L  G+ PQ + L  +L  ++ HR  V+ 
Sbjct: 317 IELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQ-PQTLGLVQLLSVYVDHRINVVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++FR++    R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LTE Q + 
Sbjct: 376 RRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMSIYDLTEIQANY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+ E+ E +    
Sbjct: 436 ILELRLRQLTKYSRIELEKEQDQLKREIAELEAILGSDQRLRELVSDELGEIAEKYGTP- 494

Query: 491 DLGRRRTTFCEVSR--------------ADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
               RRT   E                   KA      I  +P   +++  G I    + 
Sbjct: 495 ----RRTVLLESEAVSPTVAALAAARGGKGKAAPLALEIADDPCWAILTASGQIARTSNQ 550

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGE 588
                +    + D  +  +       I  +++ G+   L   ++              G 
Sbjct: 551 EPLTESGPRSKHDVFRSVVKTSARGEIAAVTSLGRMLRLQVMDMPVLPPMSGLPNLAGGV 610

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
             +  I L   + +V     D+   L + +++G    V+        R+    + +  ++
Sbjct: 611 PAKDFITLLKGETLVAFAPLDTV--LAIGTAQGIVKRVQPD--YPLNREDWEVIALKDKD 666

Query: 649 KMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG---------- 695
            +  V     D V +V      +LL FS   +    R   G+       G          
Sbjct: 667 TVVGVEPAGADDVDLVFLTRQAQLLRFSAANVRPQGRTAGGMAGIKLGAGDQVLFFGTVA 726

Query: 696 -GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            G  D +   +      +        +           R   G    +
Sbjct: 727 PGDEDAVVVTVSGTEGALPGTAPGAGKVTAFAEYPPKGRATAGVRAHR 774


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/759 (31%), Positives = 388/759 (51%), Gaps = 41/759 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAA 71
           + E ++ V++   +  R+L YA+S +K RA+PD+RDG KPV RRI++AM + + L     
Sbjct: 1   MAETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKK 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             K A+IVGEV+G  HPHGD ++Y++LVR++Q +V R PL+ GQGNFG++DGD  AAYRY
Sbjct: 61  ALKCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEA++T+ AEL+L  + +D VD   +Y+    EP V P++FPNLL NGT+GIAVGMAT I
Sbjct: 121 TEAKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A   LIDNP+ ++  LL+ I GPDFP GG I+  R ++ + Y  G G  +
Sbjct: 181 PPHNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIK 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
           V+A W  E++ RG   IVVT IPY V K  L   I  +I  +++P L    +ES E D  
Sbjct: 241 VQAEWKEEKIDRGVQ-IVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGL 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ------VMPLDGILKEW 364
            ++       DP+L+M  ++  ++++  +  NM  L      +       + L  +L E+
Sbjct: 300 RLVLEIKNGTDPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEF 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L  R   + RR  ++++ + RR+ IL+G  I +  +D  I +IR           + + F
Sbjct: 360 LKFRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIRESSGKPDAAEKLKAAF 419

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L + QV AIL+ +L  + +LE  +I  EL     + ++I+++L S K+ W  I  E+  
Sbjct: 420 KLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQAKEIETILASEKKLWGVIKSELEA 479

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           + E F        RR T            ++A I +E   VV++  G I+ +      + 
Sbjct: 480 LIEKF------PERRKTRMASDEDVLEFNEEAYIARENTNVVLTKNGRIKRV-GRLASVE 532

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
               +EGD++   +   T D +   + DG AYT+    + +  G+GE I     L     
Sbjct: 533 TTRVEEGDAVAAVVPGSTLDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLADGAK 592

Query: 602 IVTAFVYDS---------------TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVS 645
           +V A   D                   L+V +  G    +  +   + +T+ G+ F+K+ 
Sbjct: 593 VVAAVTTDPRFTPADLPAKGDTPGGPFLVVATRNGFVLRLPLTAFRSESTKVGRRFVKLE 652

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY--KDGGISDVI 701
             +K+ +V     +  V +      +  F +DQ+  +   GKGV       KD  +  V+
Sbjct: 653 EGDKVVMVRLAGAEEGVMLATSGGYVTHFPLDQVSILSGAGKGVIGIELESKDDCLGGVL 712

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                + L      G++ +     +     KRG  G   
Sbjct: 713 VGGRFDKLVVETENGKTQDFGPGAVKTR--KRGAKGEKP 749


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 217/713 (30%), Positives = 367/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P+  +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE   L    E +  +++   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + + 
Sbjct: 475 GELAEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSGGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +           L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGEGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KDGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 222/695 (31%), Positives = 354/695 (50%), Gaps = 39/695 (5%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A +VGEV+   HPHGD SVYD+LVRLAQP+V RYPLI  QGNFG++DGDSAAAYRYTE 
Sbjct: 1   CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+  +AE +L  ++ED VDF   YNE  +EP V PS  PNLL NG++GIAVGM T+IP H
Sbjct: 61  RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A++A++DNP  ++++L + I GPDFPTGG ++  R+ I    R GRG  R+R 
Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGG-VIAGRDGIDSYLRTGRGIVRMRG 179

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   EE   G   I++TEIPY V ++ L+ +IAEL+  K+I  + DIRDES E+ RIV+ 
Sbjct: 180 RAITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESDENTRIVIE 239

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
            K R      ++  ++  + +E+ F + +  L   R P+ M +  +L  ++ HRR+V+ R
Sbjct: 240 LK-RGEQSSPILNQLYQKTALESSFGVILLAL-DKRRPKQMNIRELLDCYIDHRRDVITR 297

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ FR++  + R  IL+G  IA  N+D+ + IIR      + K  +++++ L+E Q D+I
Sbjct: 298 RTRFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAKYPLSERQTDSI 357

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  LE  +I++E   LL   E++  +L +  +    I  E+  +KE +  +  
Sbjct: 358 LELRLYQLTGLERDKIEAEYLELLKLIEELKVILENDWRLREVIKEELLVMKEKYGDARK 417

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    E++ A      + +I  E   + +S+ G+I+          K     +   
Sbjct: 418 --------TEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPSADYRSQKRGGKGVIGT 469

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601
              + D ++    A T D I+ +++ G+       ++  G     G+++   + LN  + 
Sbjct: 470 ETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTAKGKSVSSFLRLNEGEK 529

Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVK 655
           I        + S   L++ + +G       S+ +  TR    G   + ++  + +   V 
Sbjct: 530 IAAMLCLQDFASDRYLVMATRRGVIKKTALSDYLGTTRNLEGGLIGINLAEGDTIIGCVL 589

Query: 656 VTG-DHVAVVGENRKLLIFSIDQ-------IPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
            TG D + +V      + F                R   GV    +K       +   + 
Sbjct: 590 TTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGVTGMRFKLDNDQLDVIEVVD 649

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
               ++ ++              L  RGG G    
Sbjct: 650 HTAKFLVASEAGLGVRTRFEDYRLINRGGRGVWAI 684



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 77/199 (38%), Gaps = 26/199 (13%)

Query: 522 VVISNRGWIRSLKSHSV---------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           V+ + RG I+                 L  ++  EGD++   +     D I+L+S  G A
Sbjct: 546 VMATRRGVIKKTALSDYLGTTRNLEGGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLA 605

Query: 573 YTLPAGN--------LLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNA 623
                 +          +GR  G    +   L+++Q D++     D T K LV S  G  
Sbjct: 606 VRFRERDPETGEELFRATGRATGGVTGMRFKLDNDQLDVIEVV--DHTAKFLVASEAGLG 663

Query: 624 FIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQI 678
                 +     R G+    + +  +  + +   +     D + ++    + +   ++ I
Sbjct: 664 VRTRFEDYRLINRGGRGVWAITLPDDNSINIAGALSVKDTDEIMLLTTKGQSVRCPVNTI 723

Query: 679 PEMSR-GKGVRLQSYKDGG 696
            E++R GKGV+L +  +G 
Sbjct: 724 REVNRGGKGVKLLTLAEGD 742



 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 16/206 (7%)

Query: 457 EKEKIDSLLNSGKQQWN-QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +K  +   L + +      I   + E   I       G                 ++   
Sbjct: 555 KKTALSDYLGTTRNLEGGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRFRERDPE 614

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAYT 574
             E            R+    +  ++ + FK + D L +      T + L+ S  G    
Sbjct: 615 TGEE---------LFRATGRATGGVTGMRFKLDNDQLDVIEVVDHTAKFLVASEAGLGVR 665

Query: 575 LPA--GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                  L++  G G     L D +++ +I  A     T +++++++KG +     + I 
Sbjct: 666 TRFEDYRLINRGGRGVWAITLPD-DNSINIAGALSVKDTDEIMLLTTKGQSVRCPVNTIR 724

Query: 633 ANTRKGKT--FLKVSSEEKMKLVVKV 656
              R GK    L ++  +K+  + KV
Sbjct: 725 EVNRGGKGVKLLTLAEGDKLLSIAKV 750


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/767 (30%), Positives = 380/767 (49%), Gaps = 39/767 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 17  MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 76

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 77  MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 136

Query: 121 IDGDS-AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +  D   AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 137 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 196

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG  V     I
Sbjct: 197 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGG-RVVGLSGI 255

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 256 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 315

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L 
Sbjct: 316 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLK 374

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K 
Sbjct: 375 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 434

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 435 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLK 534
           + E+  V + F        RRT   E S A  A      +  +P  V++S+ G + R++ 
Sbjct: 495 SGELASVAKKFGTE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLLARTVT 548

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGH 586
              +          D +  ++ A     I  +++ G+   +   +L              
Sbjct: 549 GDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSG 608

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           G  +   + L  ++ ++     D + + L + + +G    V   +  AN +       + 
Sbjct: 609 GAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLK 666

Query: 646 SEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG------ 696
             +++     ++   + +  +  + +LL +   Q+    R   G+      DG       
Sbjct: 667 EGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFT 726

Query: 697 ----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                ++ + F        +D +  +   +  D     G R   G  
Sbjct: 727 AVDPAAEAVVFTAAGSTGALDDSVTTVKLTPFDQYPRKG-RATGGVR 772


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/760 (30%), Positives = 383/760 (50%), Gaps = 39/760 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   EE +  + +   ++  +L YA S I  RA+PD RDG KPVHRRI++ M+EMGL  
Sbjct: 11  PDEPYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AA 127
              + K AR+VGEV+GKLHPHGD S+YD+LVRLAQ F  R PL+ G GNFG++  D   A
Sbjct: 71  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLGNDDPPA 130

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM +   L+ + +DED VDF   Y+ ++ EPV  P+ FPNLL NG SGIAVGM
Sbjct: 131 AMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++P HN+ E+  AA  LI  P   ++ L++++ GPD PTGG  +     I ++Y  GR
Sbjct: 191 ATNMPPHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGG-RIVGLSGIRDAYESGR 249

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G F++RA   VE V      +VVTE+P+ V   ++I KI +L+ +K+I  + D++D +  
Sbjct: 250 GTFKIRATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDR 309

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+ +L 
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLD 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           HR EV+ RRS +R      R+ +++GLL A ++IDE+I +IR   N  + K  ++ RFSL
Sbjct: 369 HRFEVVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSL 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q   IL+  LR L K +  ++++E + L AE E++  +L+S  +    ++ E+  V 
Sbjct: 429 SEVQTQYILDTPLRRLTKYDRIELEAEKEKLTAEIEELTRILDSDAELRKLVSTELAAVA 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + F        RRT   E      A +    +  +P  V++S+ G +    +        
Sbjct: 489 KKFGTP-----RRTLLLEAGAVPVAAVP-LQVADDPCRVLLSSTGLLARTPNDEPLPQDA 542

Query: 544 HFK--EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLL 593
             K  + D +  ++ A     + ++++ G+   +   +L              G  I   
Sbjct: 543 DGKRVKHDVIVSSVPATARGEVGVVTSAGRLLRVNVVDLPQLPETATAPNLSGGAPITEF 602

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L  ++ ++     D +   L + + +G    V   +  AN +     + +   +++  
Sbjct: 603 VSLGDDETVICLTTLDESSPGLALGTEQGVVKRV-VPDYPAN-KDELEVITLREGDRIVG 660

Query: 653 VV--KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG----------ISD 699
            V  +   + +  + ++ +LL +   Q+    R   GV      DG            +D
Sbjct: 661 AVELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLADGAKVISFTAVDPAAD 720

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            + F +      +D + ++  +           R   G  
Sbjct: 721 AVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVR 760


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/767 (30%), Positives = 380/767 (49%), Gaps = 39/767 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 61  MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 120

Query: 121 IDGDS-AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +  D   AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 121 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 180

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG  V     I
Sbjct: 181 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGG-RVVGLSGI 239

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 240 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 299

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L 
Sbjct: 300 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K 
Sbjct: 359 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 419 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLK 534
           + E+  V + F        RRT   E S A  A      +  +P  V++S+ G + R++ 
Sbjct: 479 SGELASVAKKFGTE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLLARTVT 532

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGH 586
              +          D +  ++ A     I  +++ G+   +   +L              
Sbjct: 533 GDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSG 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           G  +   + L  ++ ++     D + + L + + +G    V   +  AN +       + 
Sbjct: 593 GAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLK 650

Query: 646 SEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG------ 696
             +++     ++   + +  +  + +LL +   Q+    R   G+      DG       
Sbjct: 651 EGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFT 710

Query: 697 ----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                ++ + F        +D +  +   +  D     G R   G  
Sbjct: 711 AVDPAAEAVVFTAAGSTGALDDSVTTVKLTPFDQYPRKG-RATGGVR 756


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/813 (27%), Positives = 375/813 (46%), Gaps = 64/813 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSASTQAPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE S+E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR+GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRVGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L  G+    + L  
Sbjct: 299 VADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPH-TLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  
Sbjct: 358 LLEVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQASYILELQLRRLTKFSVIELEKERDELAREIEALEAILADEVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA----------------------- 513
            E+  V E F  S       T+   V+ +      +                        
Sbjct: 478 RELAAVAEQFGTSRRTVLLETSGERVTSSASVAPPEDDASGATGGSTVKQAKASAEPMTL 537

Query: 514 ---------MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
                     +  +P  V++S  G +               +  D+L   +      RI 
Sbjct: 538 MPGSSPVPLTVPDDPCRVMLSATGLVARTPGAEPVARTGGRRPHDALTSQVATTARGRIG 597

Query: 565 LLSTDGKAYTLPA---GNLLS-----GRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614
            ++  G+   L       +       G      ++ L+D    + +V            +
Sbjct: 598 AVTDTGRLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVGLVPVGSADNPPI 657

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673
           ++ ++ G    V+  +      +    + +S ++++         D +A+V  + +LL F
Sbjct: 658 VLATADGVIKRVKPGD-EPRNAESWEVISLSDDDRVVFAGTARDTDFLALVTSDAQLLRF 716

Query: 674 SIDQIPEMSRGK-GVRLQSYKDGG------------ISDVICFKICEGLTWIDSAGRSYN 720
              ++    RG  G+   S ++G             +++ +   +    + +   G    
Sbjct: 717 QAAKVRPQGRGAGGMAGISLREGARVIAGAAVPEDLLAEAVVVTVAGSESSLPGTGGGSV 776

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +           R   G    +      + +++
Sbjct: 777 KVTPLDRYPAKGRATGGVRSHRFLRGEDELVAA 809


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/767 (30%), Positives = 383/767 (49%), Gaps = 85/767 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
             E +    L     + YLAYA+S I  RA+PD+RDG KPVHRRI++AM E+GLD    F
Sbjct: 58  TNERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 117

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VGEV+GK HPHGDQSVYD+LVR+AQ F     L+ G GNFG++D D  AA RYT
Sbjct: 118 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMRYT 177

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  VAE ++L  +D DAVDF +T++   +EP V P++ PN+L NG++GIAVGMATSI
Sbjct: 178 ECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSI 237

Query: 192 PSHNVQEICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRE--SIVESYRLGRG 248
           P HN++E+ +A      +P+  +++ LL+ +  PDFPT GII+  +E     + Y  G+G
Sbjct: 238 PPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKG 297

Query: 249 GFRVRARWCVEEVGRG--------SWCIVVTEIPYQ-----------------VQKSRLI 283
              +R    +EE+              +++T IPYQ                   K+ L 
Sbjct: 298 SVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLC 357

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
            +IA+L+ ++++  + D+RDES  D   V+    RS DP+ + E ++  + ++ R  +N+
Sbjct: 358 GQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSVNL 417

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L  GR P+V+ L  I++E+L  R E + RR+   +     R+ +++G L      D +
Sbjct: 418 VGLI-GREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAV 476

Query: 404 IAIIRNEDK----PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           +A IR         K +  + FSL++ Q +A+L + LR L  LE  ++++E  +L A+ E
Sbjct: 477 VAAIRAAKDGPEAQKTLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLRAEEADLTAKVE 536

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL---------------GRRRTTFCEVSR 504
           ++++LL+        +A E +E+++ +                      RRR+       
Sbjct: 537 QLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAAKLAAEVAEARRRSPPSGDGG 596

Query: 505 ADKATLQQAMIE----------------KEPITVVISNRGWIRSLKSHSVDLSALHF--- 545
            D   + +  +                      +V++ +G+I+ +               
Sbjct: 597 EDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKIFSRQNKGTIGK 656

Query: 546 -----KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598
                + GD +    H +  D +L  +  G+ Y + A ++   S    G     ++ L  
Sbjct: 657 KGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKLAE 716

Query: 599 NQDIVTAFVYDSTC--------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
            + I      D+           L++++++G       SE     R GK  L +   +++
Sbjct: 717 GETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGKRALGLQKGDRL 776

Query: 651 KLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           K V  V  GD + V G +  +L FS+D I   SR G GV+   +++ 
Sbjct: 777 KHVELVRDGDGIMVAGVDGMVLHFSMDSIRAQSRIGSGVKAMKFREA 823



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 18/116 (15%)

Query: 614  LLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVVKV--------TGD---- 659
            +L+V+S+G    +   +     R G     + +    ++  +            GD    
Sbjct: 967  VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026

Query: 660  --HVAVVGENRKLLIFSIDQIPE-MSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
               V +      L  + + ++   + R  KGV+L    DG     I     + +  
Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVEL 1082


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 263/737 (35%), Positives = 418/737 (56%), Gaps = 22/737 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +
Sbjct: 192 INACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +++T +P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+  +
Sbjct: 252 NHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSAS 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR  
Sbjct: 308 TKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+G+LIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGMLIAFLNIDEVIDIIRNYDDPSLELQSRFALSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  EKE ++  LNS  +  N +  E++++        D G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQIL------ADFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +    +   +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A   
Sbjct: 482 SKIVEADKAQALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  +  GKAY++      S RG+GE I   I L+   +I+     +     L+ 
Sbjct: 542 NSNIKLIFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S+ G  F++   ++IAN   GK    +   + +   +    D  +  V    + +I   +
Sbjct: 602 STSGKGFVIPAEDLIANKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFE 658

Query: 677 QIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKR 733
               + +GKG  +    K   +  +  FK  + LT   SAG+ + R  ++N    +  K 
Sbjct: 659 SFAVLKKGKGKAIIKLDKKDELKFIELFKPEQELTL--SAGKRFIRIDNKNFETYYTDKP 716

Query: 734 GGVGSLVPKGFPRSGKF 750
            G G L+P+GF +  K 
Sbjct: 717 SGGGVLLPQGFRKITKI 733


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 209/752 (27%), Positives = 361/752 (48%), Gaps = 28/752 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +  +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM + G  F   +
Sbjct: 1   MADRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG V+G  HPHGD S+Y+++VRL+Q +  R PLI   GN G++D D AAA RYT
Sbjct: 61  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  ++  + ++ VD    +++   EP V PS+  +L  NG +GI+ G AT IP
Sbjct: 121 EARLSKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++EI  A   L+D+PE  +  L+ Y+ GPDFPTGGI ++  + I ++Y+ GRG   V
Sbjct: 181 PHNLKEINGALTYLLDHPEAPLSALMRYVKGPDFPTGGI-IQGLDGIKKAYKTGRGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  + E+  G   I +TE+PY+V KS L+ KI  + + K +  + ++RDES  +   +
Sbjct: 240 RAKTVISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +   N+ ++   ++  +F  +D++  +  NM  +   R   V  L   L+ +L  R+EV+
Sbjct: 300 VIELNKDVNAAGILTYLFKKTDLQIYYNFNMVAIHDQRPVHV-SLKQGLEAFLNFRKEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVD 429
            +RS++ +     R  I++GL+     +DE++A IR     K    +       T+ Q +
Sbjct: 359 LKRSAYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIDSYQFTQPQAE 418

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +  Q++ E   L A+  +++ ++N      + I  EI E+   +   
Sbjct: 419 AIVTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINESSALNDVIRDEIAEITTTY--- 475

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL--HFKE 547
                 R +  E    +        I +E + V++S  G+ +     S   S       E
Sbjct: 476 ---RSPRRSEIEAEVENLIIDSAITIAEEDVQVLVSRNGYYKRASLRSYKASDSDNGLAE 532

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI-QLLIDLNHNQDIVT 604
            D        +TT  + + +  G     P   L     +  GE   Q L + + ++ ++ 
Sbjct: 533 DDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIK 592

Query: 605 AFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---- 657
               D+        VV++ G       S+++    K KT + +  +     VV +     
Sbjct: 593 VIAIDNLEQEGAFTVVTNDGFIKQTILSDMVPKAYKKKTSMAIKLKTDSSYVVGIAYFKQ 652

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                V ++  +   L F +  +PE+  R  GV+    +         F   +       
Sbjct: 653 AKQQDVLLLSHDGVGLRFKVTDVPEIGPRTAGVKAMDLRGTDTIMAALFITNDSQQVAIV 712

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746
           A     +          KR   G L+     +
Sbjct: 713 ASNGAFKYMPISEINRSKRANKGLLIF--TQK 742


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 250/775 (32%), Positives = 408/775 (52%), Gaps = 62/775 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFKKSARIV 79
            +   ++  Y+ YA+S I  R++PD+RDG KPV RRI++ M  ++       +KKSARIV
Sbjct: 12  DIVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPYKKSARIV 71

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQ FV RYPLI GQGNFG+IDGDS AA RYTE RMT++
Sbjct: 72  GDVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYTEIRMTKI 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ +D+D VDF   Y+    EP V P+K PNLL NGT+GIAVGMAT+IP HN++E+
Sbjct: 132 AEEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIPPHNLKEV 191

Query: 200 CEAALALIDNPEIS----------------------IEKLLEYIIGPDFPTGGIIVESRE 237
            +A L L+ N                            K++  +  PDFPTGGII+ S++
Sbjct: 192 IKACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGGIIINSKD 251

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I + YR G G  +++A+  V         I++TE+PY V KS LI KIA+L  + +I  
Sbjct: 252 -IPKIYRNGTGSIKIKAKIEV-----NKDQIIITELPYMVNKSDLIIKIADLSKSNKIQG 305

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + DI+DES +D+RIV+  + ++ DP++++  ++  + + T F  N   +   +  Q + +
Sbjct: 306 IADIKDESTKDIRIVIKLRKKT-DPNIVLNQLYKYTQLTTTFSCNFVGIYKNKPYQ-LNI 363

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPK 414
             +L  +L+ R +++ RR+ F ++    ++  LKGL IA  NID  + II   +N     
Sbjct: 364 LDLLFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTAKNTTDAT 423

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++ ++ L + QV+ ILN+RL+ L  LE  ++ +E        +    +LNS  +Q   
Sbjct: 424 QKLMKKYKLDDIQVNEILNMRLQRLTSLEIEKLLNEYQETKENIQTYKEILNSYDKQIEL 483

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+ ++++ + K+     +R T  E    D +   + +I   P+ ++ ++ G+I+   
Sbjct: 484 IINELHDLQKNYCKN----DKRLTKLEDE--DISFDIKNLIPDNPVIIIYTDDGFIKKEN 537

Query: 535 SHSVDLSA--LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGEA 589
              V  +    + ++ DS K  ++     ++LL +  GK Y L   ++    SG   G  
Sbjct: 538 ISKVTKTGKTTNLQKNDSAKFIINTTNHKKLLLFTDTGKLYYLNVYDIPETGSGNSKGTH 597

Query: 590 IQLLIDLNHNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           I  LI LN N  IV           S   ++ ++ KG        E   N++ G   LK+
Sbjct: 598 ISNLIKLNTNDKIVLIRTQIHENEYSNYDMVCITEKGLVKRTSLEEY-KNSKNGSLVLKL 656

Query: 645 SSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
           +S++K+  V  +       + ++ +  K +IF+I+Q+  ++R  KGV      +     V
Sbjct: 657 NSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNINQVRTVARLAKGVVGMLLNNENDKIV 716

Query: 701 ICFKICEGL-------TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            C  I + +              + + +        +  R   GS V K   ++G
Sbjct: 717 DCAIITKPMLENPNEYLLCTITNKGFIKLTPLEEYSVQNRKTKGSYVMKVTNKTG 771


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/727 (31%), Positives = 374/727 (51%), Gaps = 37/727 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE++    ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL       
Sbjct: 15  EEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMGLRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K ARIVGEV+G+LHPHGD ++YD+LVR+AQP+  R P++ G GNFG+  GD   AA RYT
Sbjct: 75  KCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGGDDPPAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   +DED VDF+  Y+  + EP V P+  P+L+ NGT+GIAVGMAT+  
Sbjct: 135 EARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTGIAVGMATNCA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A   LI +P  ++E L+ ++ GPD PTGG IV   E + ++Y  GRG FR+
Sbjct: 195 PHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIV-GLEGVRDAYETGRGTFRM 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE +      IVVTE+PY V   +++E+I  L+  K++  + DI+D +   +   
Sbjct: 254 RATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKDLTDRENGLR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ L+E ++  + ME  F +N   L  G+ P+ + L  +L+ +L HR +V
Sbjct: 314 LVIEVKNGFVPEALLEQLYKHTPMEDTFGINAVALVDGQ-PRTLSLKELLQVFLDHRFDV 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLLIA L+IDE+I +IR+ D     K  ++S F L+E Q 
Sbjct: 373 VRRRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKERLISVFDLSEVQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL++ LR L K    +++ E D+L    E++D+++N  K +W  ++ E+ E+ + +  
Sbjct: 433 DYILDMPLRRLTKFSRIELEKEQDDLRRTIEELDAIINDDKLRWKVVSDELGEIAKTYGN 492

Query: 489 STDLGRRRTTFCE-VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                 RRT   E    A  A      +  +P  V +S+ G +    +            
Sbjct: 493 P-----RRTVLLESAGTAVTAAAVPLEVADDPCYVYLSSTGLLARTANADQPGRGGGRAS 547

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLNHN 599
            D +  A+ A     +  L++ G+   +    L              G  +  ++ L+  
Sbjct: 548 HDVVVSAVPATARGEVGGLTSAGRLVKIGVLELPQLPDTANDPHLAGGLPVSEILALDPG 607

Query: 600 QDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGK---TFLKVSSEEKMKLVVK 655
           + ++      +    L + +  G    V    +      GK     ++++  +++   V+
Sbjct: 608 ERLLALCTLTTDGPGLALGTRLGTVKRVNPEVL------GKDDWEVIRLADGDEVVGAVE 661

Query: 656 VTGDH--VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---DVICFKICEGL 709
           +   H  +  +  + +LL F  + +    R G G+       G        I     EG 
Sbjct: 662 LRTGHETLCFITTDAQLLHFGAEAVRPQGRSGGGIAGIRVTTGERVAWFGAIDPDTPEGS 721

Query: 710 TWIDSAG 716
             + ++G
Sbjct: 722 VVVTASG 728


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/713 (30%), Positives = 369/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  AT     +  +P  V++S  G +  + + 
Sbjct: 475 GELVEVSSKYGTP-----RRTVLLGAAPSVAATSAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSDGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +       +   L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGAGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            + +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/745 (32%), Positives = 403/745 (54%), Gaps = 42/745 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K V +   ++  Y+ YA+S I  RAIPD+RDG KPV RRI+ AM E+GL     +KK
Sbjct: 2   EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGE +GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RYTEA
Sbjct: 62  SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A  +L+ +D++ VD    ++    EP V PSKFPNL+ NGTSGIAVG+ATSIP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA   L   P+ ++E+L ++I GPDFPTGGII  S E I++ Y+  RG   ++ 
Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E++      +V+ EIPYQV K  LI++IAEL+   +   + D+RDES      ++ 
Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R  DP+ +++ ++  + +E  FP+N  VL   + P+V+ L  IL+E++ HR EV+ R
Sbjct: 302 ELKRDADPEKVLKKLYKSTPLEKSFPVNFTVLVDKQ-PKVLSLKEILQEFIKHRLEVITR 360

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F ++  + R+ I++GL++A  N D++I I+R+       + ++ +R++LTE Q +AI
Sbjct: 361 RTLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTRYNLTETQANAI 420

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL     LE  ++K E   L A+ E    +L++ +++      E+ E+   +S    
Sbjct: 421 LDMRLARFTALETTKLKEEKKELEAQIENYKKILSTEEEKIKVFIQEMDEMLSKYSDE-- 478

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK----- 546
              R+TT         A  ++   ++  +  ++S+          + D S +  K     
Sbjct: 479 ---RKTTI--------AVEKELTFKEYFMFAIMSSGKVYNHKVDENTDKSEILQKIINDI 527

Query: 547 -----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
                EG  +       ++  +   + +GKA      +L  G G          L  + +
Sbjct: 528 SLNSVEGKKIVSIQEVESSKPVAFFTKEGKADWSLVIDLPKGEG---------KLKIDSE 578

Query: 602 IV-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG- 658
           IV T +  +    ++ +++ KG    + + +I   + K  T + ++  +++ + +     
Sbjct: 579 IVGTIYQGEGEENRVFLITKKGIIKRMFDEDIFYKSHK-HTVMPLNEGDELAVAIADQNP 637

Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
            ++ +  +N  LL+F  +++     + KGV      D        F I      + +  +
Sbjct: 638 SYIGIYTKNADLLLFERNEVRVTGDKAKGVEGIDL-DPNDEVAGSFLIDGHNYILIATSK 696

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
            Y +        + KRG  G +  K
Sbjct: 697 GYMKLVEKSEFPIKKRGQKGLMAVK 721


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 217/781 (27%), Positives = 379/781 (48%), Gaps = 45/781 (5%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
                +   EE +  + +   L + Y  YA S I  RA+PD RDG KPVHRRI+  M++M
Sbjct: 6   TTPEPDEDFEERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDM 65

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     + KSAR+VG+V+GKLHPH D ++YDSLVR+AQ +  R PL+ G GNFG++ GD
Sbjct: 66  GLRPDRGYVKSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGD 125

Query: 125 S-AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RYTEAR++  A ++   +DED V+F   Y+ ++ EP V PS FPNLL NG +GI
Sbjct: 126 DPPAAMRYTEARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT++  HN+ E+  AA  LI +P  +++ L+ ++ GPD PTGG I+   + I ++Y
Sbjct: 186 AVGMATNMAPHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQII-GEQGIRDAY 244

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG F++RA   +E+V      IVVTE+P+     ++I K+ EL+ AK++  + D++D
Sbjct: 245 ETGRGVFKMRATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKD 304

Query: 304 ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            S   +   ++       +P+ ++E ++ L+ ME  F +N   L  G+ P  + L  +L+
Sbjct: 305 LSDRFNGLKLVIEIKAGFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVS 419
            +L HR EV+ RR+ FR      R+ +++GLLIA ++ID +I IIR  D     K  +++
Sbjct: 364 VYLDHRFEVVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLMA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             +L++ Q   IL+  LR L + +  +++SE D L  E   + ++L S       ++ E+
Sbjct: 424 ALALSDKQATYILDTPLRRLTRFDSLELESERDKLTGEIRDLTAILESDTLLRKVVSDEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSV 538
             + + F+       RR+   E +          +   +P+ V++S  G + R+    + 
Sbjct: 484 AAISKQFATP-----RRSVLVEGALPVFEARPLEIS-DDPVVVLLSATGLLARTASGATK 537

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL----------SGRGHGE 588
             S     + D++   + +     +  ++T G+    P  +L                G 
Sbjct: 538 IGSGGERGKNDAVASVVTSTIRGEVGAVTTAGRLIRFPVIDLPVLPESAAKAAPSLAGGA 597

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +   + L  ++ ++     +     L + + +G    V         R     + +   
Sbjct: 598 PVSEFVRLEEDERVLCLCSLNPESPGLALGTVQGVVKRVVPD--YPRNRDTFEVITLKDG 655

Query: 648 EKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD---------- 694
           + +     ++   + +  + ++ +LL +S   +        G+   +  D          
Sbjct: 656 DSLAGATELRTGEEELVFITDDAQLLKYSASLVRPQGCPAGGMAGITLSDDASVIFFGAV 715

Query: 695 --GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             G    ++     +       A  +   +   L    G R   G    +      + ++
Sbjct: 716 DPGHDGLIVSMAGSDDALV--EAATTMKATPYALYPTKG-RATGGVRCQRFLKGEHRLVA 772

Query: 753 S 753
           +
Sbjct: 773 A 773


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/713 (30%), Positives = 368/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIINDKAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + + 
Sbjct: 475 GELVEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSDGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +       +   L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGAGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            + +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/620 (29%), Positives = 307/620 (49%), Gaps = 29/620 (4%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
            ++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++
Sbjct: 4   TKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVM 63

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+R  +E    G   
Sbjct: 64  DNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRSRTEIETTKTGRER 122

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    +    R    ++++ 
Sbjct: 123 IVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILN 182

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ RR+ F  +  + R 
Sbjct: 183 NLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARA 241

Query: 388 EILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q  AIL++RLR L  LE 
Sbjct: 242 HILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQAILDMRLRRLTGLER 301

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS       RRT    +  
Sbjct: 302 DKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDK-----RRTEL--MVG 354

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
              +   + +IE+  + + +SNRG+I+          K     +     K+ D ++  + 
Sbjct: 355 QVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS 414

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD----S 610
             T D +L  +  G+ Y L    +        G  +  L+ L+ ++ I T    +     
Sbjct: 415 TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSD 474

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RK 669
              L   +  G        E     + G   L +  E+++  V+   GD   ++G     
Sbjct: 475 DAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGY 534

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            + F+   +  MSR   GV+  + ++G    V    I +    +    + Y +       
Sbjct: 535 AVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVLVITEKGYGKRTVATEY 593

Query: 729 WLGKRGGVGSLVPKGFPRSG 748
               RGG G    K   ++G
Sbjct: 594 PTKGRGGKGMQTAKITEKNG 613



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 456 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 515

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 516 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 574

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++LV++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 575 EVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 634

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 635 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 684



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 429 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 485

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 486 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 545

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 546 MSRIATGVKGVNLREGDTVVGASLITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQT 605

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 606 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 665

Query: 651 K 651
            
Sbjct: 666 V 666


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 216/713 (30%), Positives = 366/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P+  +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE   L    E +  +++   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERGELRERIEGLTLIVSDEAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S    +  + + 
Sbjct: 475 GELAEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATSLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSGGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +           L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGEGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KDGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|332294867|ref|YP_004436790.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
 gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/741 (32%), Positives = 395/741 (53%), Gaps = 34/741 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   +++ YL YA+S I  RAIPD+RDG KPV RRII+AMSEMG+ +    KK AR+VGE
Sbjct: 8   VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD +VYD+LVR+AQ F  RYPLI G GNFG++DGD+AAA RYTEAR+ +++ 
Sbjct: 68  VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            ++  +  + V  +D ++    EP V P+KFP LLANG SGIAVGMATSIP HN+ E+ +
Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L ++ NP++S E+LL+ + GPDFPTGGIIV  +  I E +  G+G   +R R  +E +
Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIV-GKNGIKEYFLTGKGKIILRGRHKIE-M 245

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
           G  +  +V++EIPY V K+ L+EKI +LI  KR+  + +IRDES  +   ++    +  +
Sbjct: 246 GSKTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGAN 305

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            + +++ ++  + M+  F + M  L  G VP+V+P+  +L  +L  R+++  +R    ++
Sbjct: 306 SEKIVKKLYKHTTMQITFGVIMLSLVAG-VPKVLPVKDVLLHFLTFRKDIQRKRLEKILE 364

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
            + +R+ +L  L  A   ID++I II+   N  + K  +     ++E     IL+LRL+ 
Sbjct: 365 DLKKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCEFLQISEEGAQGILDLRLQR 424

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I  +L+  L E ++ +  LN   +    +  E+ E+K  F+       +R T
Sbjct: 425 LTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEILENELVEIKSNFAD------KRRT 478

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE----------G 548
              +   ++  + +  I +  + V IS  G+I+ +K    +      K            
Sbjct: 479 EISL-DFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQNKGGKGIDGIQKSSAIQ 537

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606
           D ++ ++     DRIL +S+ G+AYTL A ++   S    G  I  ++ L+ ++ I    
Sbjct: 538 DRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTGIANILPLSEDEKITFMV 597

Query: 607 VYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663
                     +++ +S G    ++   I++  R G   +K++  E +     V  +   +
Sbjct: 598 QIKEEEIKKDIILATSMGYLKKIKLENIVSKRRNGVIAIKLNDSESVVGACMVCEEKFLL 657

Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNR 721
              N    + ++  +  M     GV      KD  +  ++     +   +I        +
Sbjct: 658 YSSNGFATLANLKDLRNMGNNSHGVIGMRLSKDDKLLGIV----PDSKYFIVIDKNGNGK 713

Query: 722 SENDLLGWLGKRGGVGSLVPK 742
             +       KRG  G  V K
Sbjct: 714 KVSSDNFTSHKRGTKGVRVSK 734


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/774 (29%), Positives = 372/774 (48%), Gaps = 50/774 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MG
Sbjct: 9   VSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMG 68

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D 
Sbjct: 69  LRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DG 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+GIAV
Sbjct: 128 PAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+ D +
Sbjct: 247 GRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++       +P+ ++ +++  + +E  F +N   L  G+ PQ + L  +++ +
Sbjct: 307 DRTNGLRLVIEIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQ-PQTLGLLDLMRVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D+    +  +   F
Sbjct: 366 IDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKLKVVF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LT+ Q + IL LRLR L K    ++++E + L  E  ++  +L S       ++ E+ E
Sbjct: 426 DLTDTQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILGSDAALRELVSEELAE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQ-------------QAMIEKEPITVVISNRG 528
           V E +        RRT          A                   I  +P  V++S  G
Sbjct: 486 VAERYGT-----DRRTQLKTKDEMQVAIEAVTAQSKTKKSLGLALEIADDPCWVLLSASG 540

Query: 529 WIRSLKSHSVDLS----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--- 581
            +       +  +       FK  D     +       I  +++ G+   L   ++    
Sbjct: 541 MMGRTPGKPIREALVDPGKRFKH-DVFTSIVPTTARGEIGAVTSAGRMVRLSVMDIAVLD 599

Query: 582 -----SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                           L+ L   + +V     ++   L + ++ G    +     +  T 
Sbjct: 600 ENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTV--LALATAGGVIKRLNPDYPLNQTE 657

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                +K+   +++        D   +  V  + KLL F   ++    R G G+      
Sbjct: 658 W--DIMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGIKLA 715

Query: 694 DGG---ISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGK-RGGVGSLVPK 742
           DG       V        +  + +      +     L  +  K R   G    +
Sbjct: 716 DGDRLIALGVTAPGDAAEVVTVTNGKDGLASAKVTALSEYPQKGRATGGVRAHR 769


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 249/731 (34%), Positives = 403/731 (55%), Gaps = 42/731 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +++ Y+ YA+S I  RAIPD+RDG KPV RRI+++M EMGL     FKK
Sbjct: 5   ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGDQ+VY++LVR+AQ F  RYPLI GQGNFG+IDGD AA  RYTEA
Sbjct: 65  SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++ +A  +L  +D+D VDF+  +++   EP V PSKFPNLL NGTSGIAVG+ATSIP H
Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  A + L  NP+IS+++++E + GPDFPTGG+ +E+   + E Y+ GRG  +V+ 
Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGV-IENFAQVKEIYKTGRGIIKVKG 243

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  VE+V  G   IV+TEIPYQV K+ LI+KIA+ +   +I  + DIRDE+ ++   ++ 
Sbjct: 244 KAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    + +++ ++  + +E  FP+N+ VL     P+++ +  +L+E++ HR EV+ R
Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKE-PKLVDIKTLLREFIKHRLEVILR 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAI 431
           RS + ++ +  R+ I++GLL A   ID+II  IR            +  F L+E Q  A+
Sbjct: 363 RSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAV 422

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+LRL+ L  LE  ++  E   L  + E    L+ S  ++      E  E+ + +     
Sbjct: 423 LDLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKY----- 477

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
            G +R TF    +          +++  ITV +   G I  ++   ++ +         +
Sbjct: 478 -GDKRRTFIGGVK---------EVKEGSITVAVLQDGSIIPVEELPLEKA--------PV 519

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS- 610
              L    T+ + L+S  G+ Y +     L G         +   +  + IV AF+ +  
Sbjct: 520 VNILRVPFTEGLFLVSNRGRVYWIAGSQALQG-------SKVSLKSREEKIVGAFIREKF 572

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRK 669
             +LL+ + KG    +  +E      +G   +K++  +++  +   V   H+ +  +  +
Sbjct: 573 GNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGR 631

Query: 670 LLIFSIDQIPE-MSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           +  FS+ ++P      +GV+     K+   S +  +     L  I + GR    S  ++ 
Sbjct: 632 VARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI- 690

Query: 728 GWLGKRGGVGS 738
                RG  G+
Sbjct: 691 -PKTNRGVKGT 700


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
 gi|332675446|gb|AEE72262.1| DNA gyrase subunit A [Propionibacterium acnes 266]
          Length = 844

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/713 (30%), Positives = 368/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + + 
Sbjct: 475 GELVEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSDGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +       +   L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGAGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            + +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 258/735 (35%), Positives = 409/735 (55%), Gaps = 18/735 (2%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   + +KKSAR VG
Sbjct: 12  SVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQV 139
           +V+GK HPHGD + Y+++V +AQ F  RYP I GQGN+G+ID   S AA RYTE+R+++ 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A L+L  + +  VD+   ++    EP + P++ PN+L NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEV 191

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A L L+ NP+ SIE++LE I  PD+P G  I+ S+E I E Y+ G G  R +A +  +
Sbjct: 192 INACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKN 317
             G     +++T +P+QV  + ++E+IA  +  ++I  +++I+DES   E V+IVL+  +
Sbjct: 252 NHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSAS 307

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
              +   +M  +   +D+E  F +NMN++ +   PQV  L  IL EWL +RR  L RR  
Sbjct: 308 TKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQ 367

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             +  +  R+ IL+GLLIA+LNIDE+I IIRN D P   + SRF+L+E Q +AILN+RLR
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIEIIRNFDDPSLELQSRFALSEIQAEAILNIRLR 427

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L K+EE +IK E   L  EKE ++  LNS  +  N +  E++++        D G  R 
Sbjct: 428 KLAKIEEIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQIL------ADFGDSRR 481

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           +    +   +A  ++ ++  E +TV++S  GW+R  K  ++D   L +K  D   +A   
Sbjct: 482 SKIVQADKAQALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSG 541

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
           ++  +++  +  GKAY++      S RG+GE I   I L+   +I+     +     L+ 
Sbjct: 542 NSNIKLIFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIA 601

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           S+ G  F++   ++IAN   GK    +   + +   +    D  +  V    + +I   +
Sbjct: 602 STSGKGFVIPAEDLIANKVTGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFE 658

Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGG 735
               + +GKG  +           I     E    + +  R     ++N    +  K  G
Sbjct: 659 SFAVLKKGKGKAIIKLDKKDKLKFIELFKLEQELTLSAGKRFIRIDNKNFETYYTDKPSG 718

Query: 736 VGSLVPKGFPRSGKF 750
            G L+P+GF +  K 
Sbjct: 719 GGVLLPQGFRKITKI 733


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/713 (30%), Positives = 368/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + + 
Sbjct: 475 GELVEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSDGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +       +   L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKGERALAVTSLSGAGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            + +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 193/719 (26%), Positives = 326/719 (45%), Gaps = 106/719 (14%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMA
Sbjct: 1   MRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG
Sbjct: 61  TNIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRG 119

Query: 249 GFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
              +RAR  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES 
Sbjct: 120 RIYMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESD 179

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   V+    R   P++++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ 
Sbjct: 180 KDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVR 238

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------- 416
           HRREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+    P             
Sbjct: 239 HRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWE 298

Query: 417 ---------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                         ++ L+  Q  AIL LRL  L  LE  ++  
Sbjct: 299 SSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLG 358

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E   +L +  ++  +LNS  +    I  E+  ++  +  +     RRT   E+  A    
Sbjct: 359 EYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDL 410

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               +I +E   V IS+ G+ ++         +      SA   K+ D +   L A++  
Sbjct: 411 TLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHT 470

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD---------- 609
            +L+ S+ GK Y L    +   S    G  +  L+ L+  + I T    D          
Sbjct: 471 TLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADE 530

Query: 610 --------------------------------STCKLLVVSSKGNAFIVEESEIIANTRK 637
                                               + + ++ G                
Sbjct: 531 EGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSS 590

Query: 638 GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           G   L++   + +       G+  + +  +  K+  F    +  M R  +GVR     +G
Sbjct: 591 GLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG 650

Query: 696 GISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               +I   I  EG   + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 651 --QKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGA 707



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  S  L AL   EGD L  A
Sbjct: 547 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISA 606

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 607 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 665

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 666 LTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 725

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 726 VRTRVGEVSSLGRNTQGVTLIKLASD 751


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/735 (29%), Positives = 381/735 (51%), Gaps = 23/735 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +   +  YA   I+ERA+PD RDG KPV RRI++AM   G  +  A++KSA+ VG 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDARDGLKPVQRRILYAMYHDGNTWDYAYRKSAKTVGL 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIG  HPHGD SVYD++VR++Q +  R PLI   GN G+ID D AAA RYTEAR+ +V +
Sbjct: 78  VIGNYHPHGDTSVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++ + +D++ V+    +++ + EP V P  FP +L NG +GIA G AT++P HN+ E+ +
Sbjct: 138 VMEEDLDKNTVEMAPNFDDTEHEPTVLPVPFPVMLVNGATGIAAGYATNMPPHNLNEVVD 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +  I NPE ++  +++ + GPDFPTGGI V+    I +++  G+G   VR++  + E 
Sbjct: 198 ATIYRIQNPESALTDVMDILTGPDFPTGGI-VQGEAGIRDAFTTGKGRIVVRSKCEIHEE 256

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +    I++TEIPY+V K +L++K+ E+ ++K I  + D+RDES  +   ++    + +D
Sbjct: 257 -KSCQQIIITEIPYEVVKGQLVKKMDEIRVSKDIDGILDVRDESDREGLRIVVDVRKDID 315

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++   +  +D++  +  N   +   R  QV  L G+L  ++A R+EV+ RRS + + 
Sbjct: 316 ANMILNYFYKNTDLQVYYNYNNVAIIDKRPVQV-GLLGLLDAFIAFRKEVVLRRSRYELD 374

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRS 438
            ++ R  I++GL+ A   +DE+I IIR        K  +++ F   E Q +AI++LRL  
Sbjct: 375 KMEARCHIIEGLMKAVSILDEVIRIIRASQDKGDAKRNLMNEFGFDEPQSEAIVSLRLYR 434

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   ++ E   L+ + E+  +++ +     + I  E+R VK+ +      G+ R T
Sbjct: 435 LSNTDIITLREEFAELVNQIEETKAIIENENVLHSVIIKELRNVKKEY------GQERRT 488

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---SALHFKEGDSLKIAL 555
             E    +    + AMI  E + V +S  G+++ +   S +         K+GD L    
Sbjct: 489 RIEAEVEEINYDKTAMIANERVVVTVSRDGYLKRVSMRSYNAVGDQETSIKDGDVLIGTT 548

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDS 610
              T D +LL ++ G   ++P   +  G+    G  +  ++ ++    I  A +   +D+
Sbjct: 549 ECDTLDTLLLFTSKGNYASIPVWQIDEGKWKDVGMHLNKVVRIDGEDKIKNAILIKSFDT 608

Query: 611 TCKLLVVSSKGNAFIVEESE-IIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENR 668
              ++ VSS G       +   +    K  T + +S + +M    +      + +V ++ 
Sbjct: 609 YAWIVTVSSAGQIKKTPVNNWQVERNNKVMTAMNLSKDAEMIHAFIAYRNQQILMVSKDG 668

Query: 669 KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
               F+I+ IP    + KGV+  +   G      C    E    +        +  +   
Sbjct: 669 YSYRFAIEDIPATGVKSKGVKAMNLGKGDKLAWGCVMNAEDPAVLYMTNVGQMKRIHTEE 728

Query: 728 GWLGKRGGVGSLVPK 742
              G R   G+L+ K
Sbjct: 729 IVFGNRPMKGNLICK 743


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/774 (29%), Positives = 375/774 (48%), Gaps = 50/774 (6%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+    V EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MG
Sbjct: 9   VSDYPVDVVENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMG 68

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KSAR+ GEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D 
Sbjct: 69  LRPDKGHVKSARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DG 127

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEARM   A+ +   ++ED VDF   Y+ +  +P V P+ FPNLL NGT+GIAV
Sbjct: 128 PAAARYTEARMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++  HN++E+      LI +PE +++ ++++I GPD PTGG IV     I ++Y  
Sbjct: 188 GMATNMAPHNLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIV-GLGGIRDAYET 246

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F+ RA+  +E+V      IVVTE+PY V   ++IEKI + + +K++  + D+ D +
Sbjct: 247 GRGTFKTRAKVSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLT 306

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++       +P+ ++ +++  + +E  F +N   L  G+ PQ + L  +++ +
Sbjct: 307 DRTNGLRLVIEIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQ-PQTLGLLDLMRVY 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR  V+ RR+ FR+     R+ +++GLL+A L+IDE+I IIR  D+    +  +   F
Sbjct: 366 IDHRLNVVRRRTEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKLKVVF 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LT+ Q + IL LRLR L K    ++++E D L  E  ++  +L+S       ++ E+ E
Sbjct: 426 DLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILSSDAALRELVSEELAE 485

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQ-------------QAMIEKEPITVVISNRG 528
           V E +        RRT          A                   I  +P  V++S  G
Sbjct: 486 VAERYGT-----DRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADDPCWVLLSASG 540

Query: 529 WIRSLKSHSVDLS----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--- 581
            +       +  +       FK  D     +       I  +++ G+   L   ++    
Sbjct: 541 MMGRTPGKPIREALVDPGKRFKH-DVFTSIVPTTARGEIGAVTSAGRMVRLSVMDIAVLD 599

Query: 582 -----SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                           L+ L   + +V     ++   L + ++ G    +     +  T 
Sbjct: 600 ENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTV--LALATAGGVIKRLNPDYPLNQTE 657

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
                +K+  ++++        D + +  V  + KLL F   ++    R G G+      
Sbjct: 658 W--DIMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGIKLA 715

Query: 694 DGG---ISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGK-RGGVGSLVPK 742
           DG       V        +  + +      +     L  +  K R   G    +
Sbjct: 716 DGDRLIALGVTAPGDAAEVVTVTNGKDGLASAKVTALSEYPQKGRATGGVRAHR 769


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 218/713 (30%), Positives = 368/713 (51%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MTKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPHGD ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM   A  ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ E+  A   ++D+P   +++++ ++ GPD PTGG  +   + I 
Sbjct: 177 SGIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGG-RIIGLDGIA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F +N   L     P+ + L  
Sbjct: 296 VKDLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLV-EGQPRTLGLLE 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  ++N   +    ++
Sbjct: 415 LMGTFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + + 
Sbjct: 475 GELVEVSSKYGTP-----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLLARIDTA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               S       D +  +          ++++ G+   + A  L S            G 
Sbjct: 530 DGLPSDGDRATHDVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L   +  +       +   L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLKKGERALAVTSLSGAGPSLALGTRNGIVKRVNPELL------GKESWEVIGL 643

Query: 645 SSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            + +++   V++  + + +  V +   LL F    +    R G GV     KD
Sbjct: 644 KNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/786 (28%), Positives = 379/786 (48%), Gaps = 60/786 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   +  ++ + L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL  
Sbjct: 11  PDPSDDRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTP 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R PL+ G GNFG++D D  AA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 129 YRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+  +A   +     +D VDF   ++    EP V P++ P L+ NG +GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGIAVGM 190

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +A +AL+  P++S EKLLE + GPDFPTGG ++     + ++Y  GR
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTG-SGVRDTYLTGR 249

Query: 248 GGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           G   +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIR
Sbjct: 250 GSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIR 309

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES  +   V+    R  +P+ ++  +   + +++ +   +  L  G+  Q + L  +L+
Sbjct: 310 DESDREGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVHGKPIQ-LTLRQLLQ 368

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
           E+L +R   L RR+   ++  + R+E+++GL+ A   + ++I +I           S   
Sbjct: 369 EFLDYRELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMITAAPDAASARASLQV 428

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              L E Q DA+L + LR L  LE+  ++ E ++L  E+ ++  LL+      + +  E 
Sbjct: 429 HLDLNERQADAVLAMPLRRLTGLEQESLRKEAEDLRQERARLRHLLDERPALLDAMVAEF 488

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-----VVISNRGWIRSLK 534
           + +K+ F+       RRT   E      A    A      +        + + G +    
Sbjct: 489 KALKKRFATP-----RRTRLVEGGDELVAQRTAAQRPNTEVLRQRAFEGLPSDGRLVIQA 543

Query: 535 SHSVDLSA------LHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AG 578
              V +        LH  E    GD+    ++ L       +L  +  G+   L    AG
Sbjct: 544 DGQVKVVGPQLLGRLHLDEPAPLGDNPSPARLILPISEKPALLAFTDAGRVALLRWEFAG 603

Query: 579 N--------LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                    L  G  +GE +  L+ L   +    A V        ++SS G    +   +
Sbjct: 604 QQPGTLEKFLPEGM-NGEQVVQLLPLPSGEQAAGASVG-------LLSSDGRFKRLPIED 655

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--IPEMSR-GKG 686
               + +  + LK+     ++ VV    D  + V     ++L  +++   +P M R  +G
Sbjct: 656 FQELSGRATSVLKLKDGVTLQRVVLCRDDEELVVASSTGRMLRLAVNDANLPVMGRNAQG 715

Query: 687 -VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            V L+      +           +     +G+    + N L     +RG +G +  +   
Sbjct: 716 PVLLRLLPGESVVGAAGVSPDGCVLLASRSGQLKRLAANSL--RRCQRGDIGQIGVRFSQ 773

Query: 746 RSGKFL 751
           R  + +
Sbjct: 774 RGDQLI 779


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/775 (29%), Positives = 366/775 (47%), Gaps = 53/775 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            NT   EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL  
Sbjct: 12  DNTPYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRP 71

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KSAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA
Sbjct: 72  DRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAA 130

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMA
Sbjct: 131 PRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMA 190

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI NP+ +++ L+ ++ GPD P+GG  +   + I ++Y  GRG
Sbjct: 191 TNMAPHNLVEVISAARHLIANPDATLDDLMRFVPGPDLPSGG-RIVGLDGIRDAYATGRG 249

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE- 307
            F+ RA+  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +   
Sbjct: 250 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRK 309

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       +P+ +++ ++  S ME  F +N   L  G+ PQ + L  +L  ++ H
Sbjct: 310 HGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQ-PQTLGLVQLLTVYVNH 368

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RR+ FR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LT
Sbjct: 369 RIDVVRRRTVFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLMSIYDLT 428

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q + IL LRLR L K    +++ E D L  E  +++++L S ++    ++ E+  + E
Sbjct: 429 EIQANYILELRLRQLTKYSRIELEKEQDELRREIAELEAILGSEERLRTLVSDELGAIAE 488

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ---------------AMIEKEPITVVISNRGW 529
                     RRT   E                            I  +P   +++  G 
Sbjct: 489 EHGTP-----RRTVLLESEAVSPTIAADLALAAGKKGKAVPLALEIADDPCWAILTASGQ 543

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-------- 581
           I    +      A    + D     +       I  +++ G+   L   ++         
Sbjct: 544 IARTSNQEPLAEAGPRTKHDVFTSVVKTSARGEIAAVTSQGRMLRLQVMDMPVLPPMSGL 603

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                G   +  + L   + +V     D    L V +++G    V+        R+    
Sbjct: 604 PNLAGGVPAKEFLTLLKGETLVAFAPLDEV--LAVGTAQGVVKRVQPD--YPLNREDWEI 659

Query: 642 LKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-- 696
           + +  ++ +  V     D   +  +    +LL F+   +    R   G+       G   
Sbjct: 660 ISLKDKDFVVGVAPAGADDAELVFLTSQAQLLKFAAASVRPQGRTAGGMVGIKLAAGDRV 719

Query: 697 ---------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                        +   I      +        +           R   G    +
Sbjct: 720 LFFGAVQPKDEAAVVVTIAGTTGALPGTAPGTAKVTAFSEYPAKGRATAGVRAHR 774


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/772 (30%), Positives = 372/772 (48%), Gaps = 58/772 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS+MGL       K
Sbjct: 19  ENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVK 78

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D D  AA RYTEA
Sbjct: 79  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 137

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NGT+GIAVGMAT++P H
Sbjct: 138 RLAAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGMATNMPPH 197

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI NP  ++E+++ +I GPD PTGG  +   + + ++Y  GRG F+ RA
Sbjct: 198 NLVEVIAAARHLIANPGATLEEIMRFIPGPDLPTGG-RIVGLDGVRDAYATGRGSFKTRA 256

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + + +K++  + D+ D +  +    ++
Sbjct: 257 KVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRNHGLRLV 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P+ +++ ++  S ME  F +N   L  G+   +  L  +      HR  V+ 
Sbjct: 317 IELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLLQLLQVYV-EHRLNVVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+SFR+     R+ +++GLLIA ++IDE+I IIR+ D+    +  ++S + LTE Q + 
Sbjct: 376 RRTSFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMSIYDLTEIQANY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E E ++++L S +   + ++ E+  + E +    
Sbjct: 436 ILELRLRQLTKYSRLELEKEQDELRREIEALEAILASDELLRDLVSGELAVIAEKYGTP- 494

Query: 491 DLGRRRTTFCEVS----------------RADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               RRT   E                     KA      I  +P   ++S  G I    
Sbjct: 495 ----RRTVLLESEAVSPTVAAALAASVPGPKGKAAALPLEIPDDPCWALLSVSGQIARTS 550

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGH 586
           +      A    + D  +  +       I  +++ G+   L   ++              
Sbjct: 551 NQEPLAEAGPRTKHDVFRSVVKTTARGEIGAVTSQGRMLRLQVMDMPVLPPVSGLPNLAG 610

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           G   +  I L   + +V     D+   L + + +G    V+        R+    + +  
Sbjct: 611 GVPAKDFITLLKGETLVAFVPLDAV--LAIGTVQGVVKRVQPD--YPLNREDWEIIALKD 666

Query: 647 EEKMKLVVKVTGDHV--AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           ++ +  V     D+V    V    +LL FS   +    R   G+       G   +VI F
Sbjct: 667 KDLVLAVEPAQDDNVDLVFVTRQAQLLRFSASNVRPQGRTAGGMAGIKLAAG--DEVIHF 724

Query: 704 ----KICEGLTWIDSAGR---------SYNRSENDLLGWLGKRGGVGSLVPK 742
                       +  AG             +           R   G  V +
Sbjct: 725 GTVRADDPAAVVVTIAGTNGALPGTAPGTAKVTAFEEYPAKGRATGGVRVHR 776


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/733 (31%), Positives = 376/733 (51%), Gaps = 44/733 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL       K
Sbjct: 17  ENIIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLHPDRGHVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG++D   AA  RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLDAGPAA-PRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+   A  +   +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAVGMAT++  H
Sbjct: 136 RLAAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVNGATGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  LI +PE++++ ++ ++ GPD PTGG  +   + I E+Y  GRG F+ RA
Sbjct: 196 NLVEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGG-RIVGLDGIREAYETGRGSFKTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313
           +  VE++      +VVTE+PY V   ++IEKI + + AK++  + DI D +  +    ++
Sbjct: 255 KIDVEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGISDIVDLTDRNHGLRLV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P  +++ ++ L+ ME  F +N   L  G+ P+ + L  +L+ ++AHR +V+ 
Sbjct: 315 IELKNGFNPQAIIQQLYKLTPMEDSFGINNVTLVDGQ-PKTLGLLELLRVYVAHRIDVVR 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR++FR+     R+ +++G+LIA L+IDE+I IIR  ++    +  +++ + L+E Q + 
Sbjct: 374 RRTAFRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDRLIAIYDLSEIQANY 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    +++ E D L  E E+++ +LNS       ++ E+ E+ E +    
Sbjct: 434 ILELRLRQLTKYSRIELEKEQDELRKEIEELERILNSEPVLRELVSSELAEIAEKYGTP- 492

Query: 491 DLGRRRTTFCEVSR--------------ADKATLQQAMIEKEPITVVISNRGWI-RSLKS 535
               RRT   E                   KAT     I  +P  V++S+ G I R+   
Sbjct: 493 ----RRTVLLESEAVSPTVAKALAAATTPGKATPLALEIADDPCWVLLSSSGQIARTSTR 548

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGHG 587
            ++  S    K  D  K  +       +  +++ G+   L   ++              G
Sbjct: 549 EALSDSGARTKH-DVFKSVIATSARGEVGAVTSAGRMLRLQVLDMPVLPPTAGLPNLAGG 607

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
              +  I L   + +++    D+   + + + +G    V         R+    + +  +
Sbjct: 608 VPAKEFITLLKGESLISFVPIDAV--VALGTKQGIVKRVTPE--YPLNREDWEIISLKDK 663

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY--KDGGISDVICF 703
           + +         D +  + E  +LL FS   +    R   G+        D  +S  +  
Sbjct: 664 DSVVAAAAAQDDDELVFITEQAQLLRFSATAVRPQGRTAGGMAGIKLASNDVVLSFAVVA 723

Query: 704 KICEGLTWIDSAG 716
                   +  +G
Sbjct: 724 AGDPAAVVVSISG 736


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/750 (28%), Positives = 390/750 (52%), Gaps = 26/750 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +   SL   + +R+  Y+   I++RA+PD+RDG KPV RRI++AM + G  +   +
Sbjct: 1   MSEKIITQSLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYT
Sbjct: 61  RKSAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++ +A  +L+ +D++ V     +++ + EP V P+K+PNLL NG +GI+ G AT IP
Sbjct: 121 EARLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN++E+ +A +  + +P  S++KL+E++ GPDFPTG I VE ++ I  ++  GRG   V
Sbjct: 181 PHNLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGAI-VEGKQGIRTAFEKGRGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +    +    I+V+EIPY+V K+ L+ K+ E+   K +  + ++RDES  +   +
Sbjct: 240 RSKTEIIHE-KNMNKIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSI 298

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    + +D    +   F  +D++  +  NM  +   + P  M ++ IL  ++ H+ EV+
Sbjct: 299 VIDLKKDVDVQNTLNYFFKNTDLQKNYNYNMVAI-KDKRPVCMGIEAILDGYIQHQIEVI 357

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            +RS F +   + R  I+ GL+ A   +D+++  IR+       K  + ++F  TE Q +
Sbjct: 358 TKRSIFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAKINIQTQFGFTEKQSE 417

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E + L +  + ++ +LNS +     I  E++ +K+ +   
Sbjct: 418 AIVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDILNSDQVLRKVIVDELKNIKKQY--- 474

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546
                 R T  +    +    ++AMI  E I V I+  G+I+ +   S   S       K
Sbjct: 475 ---PSPRLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKRISQRSYKASENTLFGKK 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVT 604
           + D L     A+T D++L+ +  G    +P   L     +  G+ I  LI ++  + IV 
Sbjct: 532 DDDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFKWKELGKHISYLIKVSPEEKIVG 591

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659
           + +   +D    +++ S  G    VE  E    TR  K    + +  ++ +  V    G 
Sbjct: 592 SVLVKSFDYPLYIILASRFGQMKRVELKEFD-VTRFTKPMKCINLKKDDSLLQVGLSDGQ 650

Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
             + +  +     ++S  +I  +  +  G++  + K+  +  +  F      ++I  + +
Sbjct: 651 QGIVLTTQAGYATLYSEQEISVLGVKAGGIKGINLKNDELIAMNIFNPLRTDSFILISDQ 710

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +           R   G+L+ K  P++
Sbjct: 711 PGIKRLRISDIPSCNRATKGNLIFK-SPKT 739


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/764 (29%), Positives = 372/764 (48%), Gaps = 53/764 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 3   SESQIIRTEYSDLMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYT 122

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  + +    +D+D VDF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 123 EARLTKFTQEVCLADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATSI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A I N  I+ ++L++YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 183 PPHNLGEVIDAVKAYIKNDSITTKQLMKYIKGPDFPTGGIVV-NKDDLINIYETGQGKIK 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           VR +   EE+  G   +V++EIPY        + +  +A L+  K+   + DI ++S+++
Sbjct: 242 VRGKVETEELKGGKKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  R
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADG-RPETLGLKKIIEHHVDFR 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF------- 421
            E+  R+    +     + E+ +GL+ A   ID II I+R     K              
Sbjct: 361 FELATRKYKTLLAKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLVNGVTDNI 420

Query: 422 --------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL +RL  L  LE   + +E +  +    + + +LN+
Sbjct: 421 KFKSSISKKMAVLLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIARYEDILNN 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   KE ++K+      R T  E   A++A  ++  IE++ +  ++   
Sbjct: 481 YDSMAQVIVEELESFKEEYAKA------RRTVIE--NAEEAVFEEKKIEEQEVVFLMDRF 532

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ R +     + +          K  +H   T +I + +  GK + +   +L  G  R 
Sbjct: 533 GYARIVDVAVYERNKEA--ADSENKYIVHCMNTGKICIFTNSGKMHQVKVIDLPYGKFRD 590

Query: 586 HGEAIQLLIDL-NHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  + +  + ++ IV+ +  +      LL  +++G    V  SE     R      
Sbjct: 591 KGVPIDNVSNYSSSDEQIVSVYDSEQMRFAMLLFSTAQGMVKKVSGSEFQVAKRT-ILAT 649

Query: 643 KVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K+  E+ +  V  V  + HV +  +N   L F   ++P   +   GVR     K   +  
Sbjct: 650 KLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEVPIKKKAAVGVRGIRLQKKDELEK 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLG-KRGGVGSLVPK 742
           V  F+              YN  E  L      KR G G+   K
Sbjct: 710 VYLFEEG------TETKILYNEKEVSLNRLKTAKRDGAGTKARK 747


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/722 (31%), Positives = 371/722 (51%), Gaps = 30/722 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        EE +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 84  MARRSTKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQ 143

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+EMGL     + K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF  R PL+ G GNFG+
Sbjct: 144 MNEMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGS 203

Query: 121 IDGDS-AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +  D   AA RYTE RM     L+ + +DED VDF   Y+ ++ EPV  P+ +PNLL NG
Sbjct: 204 LGNDDPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNG 263

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT++P HN+ E+  AA  LI  P   +E L+ ++ GPD PTGG  V     I
Sbjct: 264 SSGIAVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGG-RVVGLSGI 322

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG F++RA   VE+V      IVVTE+P+ V   ++I KI +L+ +K++  + 
Sbjct: 323 RDAYETGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIA 382

Query: 300 DIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           D++D +       ++        P+ ++E ++ L+ ME  F +N   L  G+ P  + L 
Sbjct: 383 DVKDLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLK 441

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            +L+ +L HR  V+ RRS FR      R+ +++GLL+A ++IDE+I +IR   N  + K 
Sbjct: 442 ELLEVYLDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQ 501

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++ RF L+E Q   IL+  LR L K +  +++SE D L+ E   +  +L S  +    +
Sbjct: 502 RLIERFGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRILESDAELRKLV 561

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLK 534
           + E+  V + F        RRT   E S A  A      +  +P  V++S+ G + R++ 
Sbjct: 562 SGELASVAKKFGTE-----RRTVLLE-SGAVPAPAVALEVADDPCRVLLSSTGLLARTVT 615

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------SGRGH 586
              +          D +  ++ A     I  +++ G+   +   +L              
Sbjct: 616 GDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSG 675

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           G  +   + L  ++ ++     D + + L + + +G    V   +  AN +       + 
Sbjct: 676 GAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPAN-KDELEVFSLK 733

Query: 646 SEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +++     ++   + +  +  + +LL +   Q+    R   G+      DG  + V+ 
Sbjct: 734 EGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMAGVKLADG--ARVLS 791

Query: 703 FK 704
           F 
Sbjct: 792 FT 793


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/785 (29%), Positives = 378/785 (48%), Gaps = 63/785 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +M
Sbjct: 27  PMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQM 86

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D
Sbjct: 87  GLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-D 145

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIA
Sbjct: 146 GPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIA 205

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV     I E+Y 
Sbjct: 206 VGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIV-GTAGIREAYE 264

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D 
Sbjct: 265 TGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDL 324

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S   +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 325 SDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAILASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVIS 525
           +     S       RRT   E      A  +  +                  EP  +V S
Sbjct: 504 DTATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWS 558

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL--LSTDGKAYTLPAGNLLSG 583
             G    +       +++ F+    + IA    T  R +   +++ G    L    L   
Sbjct: 559 ATGEAARID------ASVSFERPAGIPIAGSCETRTRGVFGVVTSSGFVVRLDTLTLPPA 612

Query: 584 R--GHGEAIQ----------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +    GE +              +L   + +V     D    + +++  G    +     
Sbjct: 613 KTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYP 672

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
               R     + +   +++        D    +V  + +LL      +    R   GV  
Sbjct: 673 STQNRF--PIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAG 730

Query: 690 QSYK------------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            S +            +  ++  +   +   +  +  A +S  +        +  RGG G
Sbjct: 731 MSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQG 790

Query: 738 SLVPK 742
               +
Sbjct: 791 VRAQR 795


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/591 (41%), Positives = 370/591 (62%), Gaps = 16/591 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++         + + LR   E  YL Y++  + +RA+P + DG KPV RRII+AM E+ 
Sbjct: 1   MTDLTRPFFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGD 124
           L+  A  KKS R VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG+  D  
Sbjct: 61  LNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTE+++T ++E++L  + E  V++   ++    EP   PS+ P+LL NGT+GIA
Sbjct: 121 SFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN+ EI  A + L+DNP  +I  L +YI GPD+PT   I+     +   Y 
Sbjct: 181 VGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIR 302
            G G  R RA +  E+       +V+T +PYQV  S++IE+IA+ I +K++P L  E +R
Sbjct: 241 TGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVR 295

Query: 303 DESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES     VRIVLFP+++ +D + LM  +F  +D+E    +N+NV+ +   PQV PL  +
Sbjct: 296 DESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQL 355

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L EWL+ R + + RR  +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++R
Sbjct: 356 LSEWLSFRSDTVTRRLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPVLIAR 415

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+ +L+S  Q    I  E+ 
Sbjct: 416 FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELL 475

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
              + F  +      R       +A +A  +  ++  EP+TVV+S +GWIR+ K H VD 
Sbjct: 476 ADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDP 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           S + ++EGD L  A+   +T ++  L ++G+AY+     L + RG+GE + 
Sbjct: 530 SGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPAARGNGEPLT 580


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/806 (28%), Positives = 373/806 (46%), Gaps = 75/806 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITD 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L  G+    + L  
Sbjct: 299 VADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPH-TLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  
Sbjct: 358 LLEVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSR-------------------------------- 504
            E+  V E F        RRT   E S                                 
Sbjct: 478 RELAAVAEQFGTP-----RRTVLLEASGERVTSSAAAETADDASASGRGAKRAGGAAQPM 532

Query: 505 --ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                A+     +  +P  V++S  G +               +  D+L   +      R
Sbjct: 533 TLMPSASPVPLTVPDDPCRVLLSATGLVARTAGTEPVARTGGRQPHDALTSQVATTARGR 592

Query: 563 ILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQLLIDLNHNQDIVTAFVY--DSTC 612
           I  ++  G+   L   +           G      ++ L+D+   + +V           
Sbjct: 593 IGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSADNP 652

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLL 671
            +++ +++G    V+  +      +    + +S  +++         D +A+V  + +LL
Sbjct: 653 PIVLATAEGVIKRVKPGD-EPRNAESWEVISLSEGDRVVFADTAADTDFLALVTSDAQLL 711

Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDG--------------GISDVICFKICEGLTWIDSAG 716
            F   ++    RG  G+   S  +G                + V+     EG +   + G
Sbjct: 712 RFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAEAVVVTVAGSEG-SLPGTGG 770

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPK 742
            S   +  D     G R   G    +
Sbjct: 771 SSVKVTPLDRYPAKG-RATGGVRSHR 795


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/762 (30%), Positives = 405/762 (53%), Gaps = 36/762 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN+    +EN    SL   + ER+  YA   I++RA+PD+RDG KPV RRI+ AM+E+ 
Sbjct: 1   MSNNE---KENELVYSLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELR 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L F  ++KKSARIVGEVIGK HPHGD SVYD++VRL+Q +  RYPLI   GN G+IDGD 
Sbjct: 58  LTFNTSYKKSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDP 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+++++  +LQ +D+  V F   +++ + EPVV P+ FPNLL NG++GIA 
Sbjct: 118 AAAMRYTETRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAA 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT+IP HN+ EI  A +  I+ P+ +++ L++Y+ GPDFPTGGI ++ +  I+E+Y+ 
Sbjct: 178 GYATNIPPHNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGI-IQGKSGILEAYQT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++   E        +V+TEIPY+V K  L++KI ++   +    ++++RDE+
Sbjct: 237 GKGKIIVRSKIKFEN-----NALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDET 291

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    +  + + + + +   ++++  +  NM  ++  + P+ + L  IL  ++
Sbjct: 292 DREGLRIVIELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQ-PRQLGLKEILTHYV 350

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            H++EV+   S F +    +R EI+ GL+     +DE+IA+IR        + +   +F 
Sbjct: 351 EHQQEVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKKFG 410

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            T+ Q +AI+ LRL  L   +  Q+K+E   L+A   ++ ++L    +  + I  ++  +
Sbjct: 411 FTQIQAEAIVQLRLYRLTSTDILQLKAEQKELIATIAELKAILRDINKLNSVIIHQLELI 470

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K+ F+       RR +  E         +   I ++ + + IS  G++++L+++ +    
Sbjct: 471 KKKFA------SRRRSVIENEIEAIEIQKTETIIEKDLNIWISRDGYLKALENNQLARLV 524

Query: 541 -SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597
                 K GD       A+T+D+ILL+++ G    +P   +  +  R  GE I  + +L 
Sbjct: 525 NEEFKRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELP 584

Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKL 652
             + I++AF+ +        +++ +  G        +  A    K    + + +++++  
Sbjct: 585 GEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEATRISKALKAINLKNDDEVVA 644

Query: 653 VVKVTGDH--VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL 709
              V G H  V +   N  ++ +   QIP +  R  GV+  + +D     VI    CE  
Sbjct: 645 SQLV-GHHPYVVITTANGFIVKYHKKQIPTLGLRTAGVKSINLRDDV---VINAGYCEDD 700

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             +        +  +        R   G+ + K      + +
Sbjct: 701 NLVLITNLHTGKKISLTEIPTSTRPVKGTRLYKLNKDINELV 742


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/799 (28%), Positives = 378/799 (47%), Gaps = 81/799 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            EE +  V L    +  YL+YA+S I  RA+PD RDG KPVHRRI++ M E+GL      
Sbjct: 31  AEEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPH 90

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VG+V+GK HPHGD SVY++LVRLAQ F    PL+ G GNFG++D D  AA RYT
Sbjct: 91  RKCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYT 150

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+ ++AE  +L  +  + V+F +T++   +EP V P++ PNLL NG+SGIAV +AT++
Sbjct: 151 ECRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNM 210

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN+ E  +A  AL  NP+ S+++L+  +  PDFPTGG +V ++  + E Y  G+GG  
Sbjct: 211 APHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGG-VVTNKSGMKEIYETGKGGVT 269

Query: 252 VRARWCVEEVGR-----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R R  +E V           +V++EIPYQ  K+RL+E+IA+ +  + I  + DIRDES 
Sbjct: 270 LRGRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESD 329

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            D   V+    R  D   ++E ++  + +E +F +N   L   + P VMPL  IL E++ 
Sbjct: 330 RDGMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNK-PTVMPLRQILDEFIK 388

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
            R + + RR+ F +     R  +++G  I   + D ++ IIR           +     L
Sbjct: 389 FRVDTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHGL 448

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ Q D+IL + LR L  LE  ++ +EL  L  +      LL++  +  + +  E  E K
Sbjct: 449 SDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEAK 508

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKS 535
           E F++      RRT+  ++         +     +   + +S RG+++            
Sbjct: 509 EAFARP-----RRTSVEQIESLSGV---EDDSPPKDNILTLSERGYVKRICPKNFGAQNR 560

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            +        +  D L  A+H   +D+IL  S  G+   L A  +        G     L
Sbjct: 561 GTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSL 620

Query: 594 ID--LNHNQDIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           ++     NQ++      +           +++++S+G   +   + ++ +  KGK  + +
Sbjct: 621 LNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAASMLGH--KGKKVITL 678

Query: 645 SSEEKMKLVVKV-TGDHVAVVGE----NRKLLIFSIDQIPEMSRG----KGVRLQSYKDG 695
              ++++ V+   T DH+ + G        +L   +     +        G++    K  
Sbjct: 679 DKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKV 738

Query: 696 GISDV---------------------ICFKICEGLTWIDSA-----------GRSYNRSE 723
             + V                     +   I  G   + ++            +   +  
Sbjct: 739 AEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERMVSASEEFGPFILFTTKKGKGKVV 798

Query: 724 NDLLGWLGKRGGVGSLVPK 742
                 L  RG  G +  K
Sbjct: 799 AANSYRLLGRGRSGVMCMK 817



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 57/225 (25%)

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS----VDLSALHFKEGDSLKIALHAHTTDRILL 565
           ++Q  +  + + V+++++G +    + S         +   +GD L+  + A T+D  L 
Sbjct: 639 MKQGEVADDQVVVMLTSQGKVSVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDH-LF 697

Query: 566 LSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNH---------------------- 598
           ++  GKA          G+    +     I  +  +                        
Sbjct: 698 ITGTGKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDG 757

Query: 599 --------------NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFL 642
                          + +V+A   +    +L  + KG   +V  +   ++   R G   +
Sbjct: 758 ELLPPKTVGMAIVPGERMVSA-SEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCM 816

Query: 643 KVSSEEKMKLVVKV--------TGDHVAVVGENRKLLIFSIDQIP 679
           K    +   L              D V +          +++ +P
Sbjct: 817 KFKKGDDDALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLP 861


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/728 (30%), Positives = 381/728 (52%), Gaps = 25/728 (3%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +   +  YA   I+ERA+PD+RDG KPV RRI++AM   G      ++KSA+ VG 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGL 77

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIG  HPHGD SVYD++VR++Q +  R P I   GN G+ID D AAA RYTEAR+ +V +
Sbjct: 78  VIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++ + +D+D V+    +++ D EP V P  FP +L NG +GIA G AT++P HN+ E+ +
Sbjct: 138 VMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVID 197

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A +  I N E S+  +++ + GPDFPTGGI V+  E I E++  G+G   VRA+  + + 
Sbjct: 198 ATIYRIQNAECSLNDVMDILPGPDFPTGGI-VQGEEGIREAFTTGKGRIVVRAKTEIIQE 256

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            +    IV+TEIPY+V K  L++K+ E+ I++ +  L D+RDES  +   ++    + +D
Sbjct: 257 -KNLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRKDVD 315

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            +L+++  F  +D++  +  N NV  M   P  + L G+L  ++  R+EV+ RRS F + 
Sbjct: 316 ANLILQYFFKNTDLQVYYNYN-NVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELN 374

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRS 438
            ++ RV I++GL+ A   +DE+IAIIR        K  ++  F   E Q +AI+ LRL  
Sbjct: 375 KMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIENFGFDEVQAEAIVTLRLYR 434

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   +++E   L+ + E+  S+L +     + +  E+R+VKE +  +      R T
Sbjct: 435 LSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENYGDA------RRT 488

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---SALHFKEGDSLKIAL 555
             E    +    ++AMI  E + + +S  G+++ +   S +         K GD L    
Sbjct: 489 KIEAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQETGLKTGDQLIGQR 548

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
             +T D +LL ++ G    +P   +     +  G  +  L+ ++  + +++A V   +DS
Sbjct: 549 EVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDS 608

Query: 611 TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENR 668
              + +V+        + S+  +  T +    + +  ++++           V VV ++ 
Sbjct: 609 YAWITLVTKGNKIKKTKLSDWKVERTSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDG 668

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
             L  S DQIPE+   KGV+      +  ++        + L ++    ++      DL 
Sbjct: 669 YALRMSQDQIPEVKASKGVQAMKVAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDL- 727

Query: 728 GWLGKRGG 735
             L  R  
Sbjct: 728 -RLSGRAK 734


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 222/760 (29%), Positives = 383/760 (50%), Gaps = 53/760 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 4   ESQIIRTEYSDLMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+ +GK HPHGD S+YDSLV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 64  KSARIVGDTMGKYHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+T+  + +    +D++ +DF   ++E + EP+V P + PNLL NG  GIAVGMATSIP
Sbjct: 124 ARLTKFTQEVCLADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATSIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+ +A  A + N +I+ ++L++YI GPDFPTGGI+V +++ +   Y  G+G  ++
Sbjct: 184 THNLCEVVDAVKAYMKNDKITTKQLMKYIKGPDFPTGGIVV-NKDDLPAIYESGQGKIKL 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VEE+  G   +V+TEIPY        + +  +  L+ +K+   + DI ++S+++ 
Sbjct: 243 RGKVEVEELKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKEG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  + 
Sbjct: 303 IRIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANG-RPETLSLKQIIEHHVDFQF 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           E+  R+ +  +     + E+ +GL+ A   ID II I+R     K               
Sbjct: 362 ELATRKYTTLLGKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENIK 421

Query: 417 --------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                   M +    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+ 
Sbjct: 422 FKSAISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIARYEDILNNY 481

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ F      GR+R T  E   A++A  ++  IE++ +  ++   G
Sbjct: 482 DSMAGVIMEELDSYKKEF------GRKRRTVVE--NAEEAVFEEKKIEEQQVVFLMDRFG 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           + +++ +   + +          K  +H     ++ L + +GK + +   +L  G  R  
Sbjct: 534 YAKTVDTGVYERNKEA--ADKENKYIVHCMNIGKLCLFTDEGKMHQVKVLDLPHGKFRDK 591

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  + + + +++ +     +      KLL  +++G    V+ SE    +++     K
Sbjct: 592 GIPIDNVSNYSSSEEQIVMICEEEQMRYSKLLFATAQGMIKRVDGSEFQ-VSKRTIAATK 650

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDV 700
           +  E+++  V  VT   +V +  +N   L F    +PE  +   GVR     K   + +V
Sbjct: 651 LQEEDRLVAVKVVTEYQNVVLQTKNGYFLRFLSADVPEKKKAAVGVRGIKLQKKDELEEV 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSL 739
             F+             +Y      L    L KR G G+ 
Sbjct: 711 YLFEEG------TETKITYGEKTVSLNRLKLAKRDGTGTK 744


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 213/760 (28%), Positives = 381/760 (50%), Gaps = 31/760 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE ++        E+ ++ YAL+ +  RA+PD RDG KPV RRI+  M E G        
Sbjct: 11  EETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTV 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VG+V+   HPHGD +VYD+ VR+AQ F  RYPLI GQGNFG+IDGD+AAAYRYTE
Sbjct: 71  KSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNE--EDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            R++ + EL+L+ ++++ V F  TY +     +PV  P++ P +  N +SGIAVG++T I
Sbjct: 131 MRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPIC-NPSSGIAVGLSTDI 189

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E   AA+AL+DNPE+++++L++ + GPDFPTGG  +   + I      G+G   
Sbjct: 190 PPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGG-RIIGTDGIRAYLESGKGRLV 248

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310
           +R    +EE  R    +VVTEIP  + +SRL+  I   +   ++  + D+R+ES  E   
Sbjct: 249 IRGEVRLEEELRQRN-LVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGT 306

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWL 365
            ++    RS  P++++  ++  +D++T   +NM  L        R P+   +  +L+ W 
Sbjct: 307 RIVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWN 366

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            H+ +V+ RR+ ++++    R+ +++GL+I   + DEI+ I +        K  +  +++
Sbjct: 367 RHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVKYN 426

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT+ Q D I N+ L  + +L+  +   E   L    +++ +LL S  ++   +  E+   
Sbjct: 427 LTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASEAKKVALLKEELT-- 484

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
               + + + G  R T  +    ++     ++IE+ PI +V S  G +++L  ++   + 
Sbjct: 485 ----AIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKALPENAFKRAR 540

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
           A     G+ L   + A T D +L+L+  G+ Y      + +G     GE  Q +  L  +
Sbjct: 541 AGRTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPD 600

Query: 600 QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + + T    +       ++  ++ G       +E    T  G   L++  ++++      
Sbjct: 601 EALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLS 660

Query: 657 -TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWID 713
            +G    V+  N + L F+ D++    R G+GV   + K G  +   +          + 
Sbjct: 661 ESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGDVLV 720

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              +   +          +R   G        +  +   +
Sbjct: 721 VTAQGMGKRTALKDFPARRRATAGVAAI-TLAKGDRIAGA 759



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 153/446 (34%), Gaps = 34/446 (7%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
               I V     + Q  +  E++        +  L      + E VRI    ++R++  +
Sbjct: 366 NRHQIDVITRRAEYQLRKAQERL------HVVEGLIIGAAHADEIVRIFQKARDRNVAKE 419

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            +    + L+D++       +V++   + QV  LD               +     + + 
Sbjct: 420 KIKVK-YNLTDIQ------ADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASE 472

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
            ++V +LK  L A           R + + +  + S  SL E +   I+  +   ++ L 
Sbjct: 473 AKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKALP 532

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
           E   K       A  E + +++ +    +  +      V          G R ++     
Sbjct: 533 ENAFKRARAGRTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQ 592

Query: 504 RADKATLQQAMIEKEPI--------TVVISNRGWIRSLKSHSV------DLSALHFKEGD 549
           +       +A+    P+         V  +  G ++              L+ L     D
Sbjct: 593 KVFGLKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDD 652

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
            +  A  + +    L+++++G+A       + +    G+ +   I L    ++VTA    
Sbjct: 653 RVVAATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGV-NAIALKAGAEVVTALAIP 711

Query: 610 S--TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVT-GDHVAVV 664
                 +LVV+++G        +  A  R   G   + ++  +++     VT  D V + 
Sbjct: 712 PKSDGDVLVVTAQGMGKRTALKDFPARRRATAGVAAITLAKGDRIAGAALVTPDDDVVLG 771

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRL 689
               + L  ++  +    R  KG RL
Sbjct: 772 AAGGQALQVTVKDLRRQGRATKGSRL 797


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/808 (28%), Positives = 373/808 (46%), Gaps = 77/808 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DE+ VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE S+E L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITD 298

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L  G+    + L  
Sbjct: 299 VADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPH-TLGLRE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L  ++ HR  V+ RR+ FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  
Sbjct: 358 LLDVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F LTE Q   IL L+LR L K    +++ E D L  E E ++++L         ++
Sbjct: 418 LMQVFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSR-------------------------------- 504
            E+ +V E F        RRT   E S                                 
Sbjct: 478 RELADVAEQFGTP-----RRTVLLEASGEPVTSSAGSAATPDDASTASGGGEKRTGASAQ 532

Query: 505 ----ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                  A+     +  +P  VV+S  G +  +            +  D+L   + A   
Sbjct: 533 PMTLMPSASPVPLTVPDDPCRVVLSATGLVARIPGAEPVARTGRRQPHDALTSQVSATAR 592

Query: 561 DRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQLLIDLNHNQDIVTAFVY--DS 610
            RI  ++  G+   L   +           G      ++ L+D+   + +V         
Sbjct: 593 GRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSAD 652

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRK 669
              +++ +++G    V+  +      +    + +S  +++         D + +V  + +
Sbjct: 653 NPPIVLATAEGVIKRVKPGD-EPRNAESWEVISLSEGDRVVFAGTAADTDFLTMVTSDAQ 711

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDG--------------GISDVICFKICEGLTWIDS 714
           LL F   ++    RG  G+   S  +G                + V+     EG +   +
Sbjct: 712 LLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAEAVVVTVTGSEG-SLPGT 770

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            G S   +  D     G R   G    +
Sbjct: 771 GGGSVKVTPLDRYPAKG-RATGGVRSHR 797


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/785 (29%), Positives = 378/785 (48%), Gaps = 63/785 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +M
Sbjct: 27  PMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQM 86

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D
Sbjct: 87  GLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-D 145

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIA
Sbjct: 146 GPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIA 205

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV     I E+Y 
Sbjct: 206 VGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIV-GTAGIREAYE 264

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D 
Sbjct: 265 TGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDL 324

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S   +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 325 SDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVIS 525
           +     S       RRT   E      A  +  +                  EP  +V S
Sbjct: 504 DTATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWS 558

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL--LSTDGKAYTLPAGNLLSG 583
             G    +       +++ F+    + IA    T  R +   +++ G    L    L   
Sbjct: 559 ATGEAARID------ASVSFERPAGIPIAGSCETRTRGVFGVVTSSGFVVRLDTLTLPPA 612

Query: 584 R--GHGEAIQ----------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +    GE +              +L   + +V     D    + +++  G    +     
Sbjct: 613 KTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYP 672

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
               R     + +   +++        D    +V  + +LL      +    R   GV  
Sbjct: 673 STQNRF--PIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAG 730

Query: 690 QSYK------------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            S +            +  ++  +   +   +  +  A +S  +        +  RGG G
Sbjct: 731 MSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQG 790

Query: 738 SLVPK 742
               +
Sbjct: 791 VRAQR 795


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/785 (29%), Positives = 378/785 (48%), Gaps = 63/785 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +M
Sbjct: 27  PMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQM 86

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D
Sbjct: 87  GLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-D 145

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIA
Sbjct: 146 GPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIA 205

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV     I E+Y 
Sbjct: 206 VGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIV-GTAGIREAYE 264

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D 
Sbjct: 265 TGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDL 324

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S   +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 325 SDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVIS 525
           +     S       RRT   E      A  +  +                  EP  +V S
Sbjct: 504 DTATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWS 558

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL--LSTDGKAYTLPAGNLLSG 583
             G    +       +++ F+    + IA    T  R +   +++ G    L    L   
Sbjct: 559 ATGEAARID------ASVSFERPAGIPIAGSCETRTRGVFGVVTSSGFVVRLDTLTLPPA 612

Query: 584 R--GHGEAIQ----------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +    GE +              +L   + +V     D    + +++  G    +     
Sbjct: 613 KTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYP 672

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
               R     + +   +++        D    +V  + +LL      +    R   GV  
Sbjct: 673 STQNRF--PIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAG 730

Query: 690 QSYK------------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            S +            +  ++  +   +   +  +  A +S  +        +  RGG G
Sbjct: 731 MSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQG 790

Query: 738 SLVPK 742
               +
Sbjct: 791 VRAQR 795


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/665 (35%), Positives = 359/665 (53%), Gaps = 38/665 (5%)

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L  +D+  VDF   Y+  
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
             EP   PS+ P +L NG SGIAVG+AT IPSHN++E+  AA+ALI NP++S  +L+  I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFP GG I+ S   I  +Y  GRG  +VRARW +E++ RG W +VVTE+P      +
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 282 LIEKIAEL------------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLD 321
           ++E+I EL                       + LL+ +RDES ++  VR+V  PK+R++D
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
               + S+   + +E+   LN+ ++     P    L  IL EW+  R++ + RR   R+ 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
             D R+ IL+G +I +LNIDE+I IIR  D+PK  ++S F LTE Q D IL +RLR L +
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLTERQADDILEIRLRQLAR 360

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE+ +I+ EL+ L  EK K++ LL +       +  EI       + +   G  R T  +
Sbjct: 361 LEKIKIEKELEALRDEKAKLEDLLANDNAMKRLMIKEIE------ADAKQYGDDRRTLIQ 414

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             +       +A +  EP+TVV+S +GW+R+LK H +D ++  FK GDSL  A    T D
Sbjct: 415 QEKRA---TFEAKVVDEPVTVVVSQKGWVRALKGHGLDPASFSFKAGDSLYAAFQCRTPD 471

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           R++   + G+ Y++    L  GRG G  +  LI+L     ++  +   +   LL+ SS G
Sbjct: 472 RLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQPLLLASSNG 531

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIP 679
             FI +  ++++  + GK F+ + +       + V      VA +    +LL+F ID++ 
Sbjct: 532 FGFIAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMK 591

Query: 680 EM-SRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKR 733
            +   G+GV L +  D   + V    I      +   GR     +  L        +GKR
Sbjct: 592 TLSGGGRGVTLMAL-DDKETLVQALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHVGKR 650

Query: 734 GGVGS 738
              G 
Sbjct: 651 ARKGR 655


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/785 (29%), Positives = 378/785 (48%), Gaps = 63/785 (8%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            +SNS+    ++++ + +   +E  +L YALS I  RA+PD +DG KPV RRI+  M +M
Sbjct: 27  PMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQM 86

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL       KS+R+VGEV+GKLHPHGD ++YD+LV LAQPF  R PL+ G GNFG+ D D
Sbjct: 87  GLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-D 145

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RYTEAR+ Q +  +++G+DED VDF   Y+ +  +P V P+ FPNLL NG +GIA
Sbjct: 146 GPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIA 205

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT+IP HNV E    A+ L+D+P+ S+E L+ +  GPD P GG+IV     I E+Y 
Sbjct: 206 VGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIV-GTAGIREAYE 264

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG F  RAR  +E+V      IVVTE+PY V   ++ EK+ + + + +I  +   +D 
Sbjct: 265 TGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDL 324

Query: 305 SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           S   +   ++        P+ ++ S++  + ++  F +N   L  G V + + L   L+ 
Sbjct: 325 SDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEV-KTLGLRAALQV 383

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           ++ HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR+ D     +  ++S 
Sbjct: 384 FVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLISV 443

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F L+E Q + IL L+LR L K    ++++E D L A   +++++L S ++    +  E++
Sbjct: 444 FDLSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIAELEAVLASTEKLHGVVRRELQ 503

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---------------KEPITVVIS 525
           +     S       RRT   E      A  +  +                  EP  +V S
Sbjct: 504 DTATALSSP-----RRTLLLEEDGTAVAAAEDDLAPAVGVTLTSEVPLEVTDEPCRIVWS 558

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL--LSTDGKAYTLPAGNLLSG 583
             G    +       +++ F+    + IA    T  R +   +++ G    L    L   
Sbjct: 559 ATGEAARID------ASVSFERPAGIPIAGSCETRTRGVFGVVTSSGFVVRLDTLTLPPA 612

Query: 584 R--GHGEAIQ----------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           +    GE +              +L   + +V     D    + +++  G    +     
Sbjct: 613 KTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVGIITESGVIKRMRPDYP 672

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
               R     + +   +++        D    +V  + +LL      +    R   GV  
Sbjct: 673 STQNRF--PIINLDDTDQVVYAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAG 730

Query: 690 QSYK------------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            S +            +  ++  +   +   +  +  A +S  +        +  RGG G
Sbjct: 731 MSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQG 790

Query: 738 SLVPK 742
               +
Sbjct: 791 VRAQR 795


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/766 (31%), Positives = 405/766 (52%), Gaps = 48/766 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            + + SL   +   YL YA+S I  RA+PD RDG KPVHRRI++AM E+GL     F+K 
Sbjct: 12  KIISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 71

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPHGDQ+VYD+LVR+AQ F  RYPL+SG GNFG+ID D  AA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETR 131

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +  E IL  + E+ +DF + ++    EP+V P K PNLL NG +GIAVGMAT+IP H
Sbjct: 132 LSSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPH 191

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  +AL++ PE+S EKL + I GPDFPTGG I+++ E I ++YR G+G  RVR 
Sbjct: 192 NLGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQT-EGIKDAYRDGKGIIRVRG 250

Query: 255 RWCVEEVGRGSWC------IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +E++  G         +++TE+PYQV K+  IEKIA+L+   R+  + DIRDES   
Sbjct: 251 VVSIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRT 310

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R     L+++ ++  + +E  F   M  L   + PQ + L  +L+E+L+ R
Sbjct: 311 GMRVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVDNQ-PQQLSLRSLLEEFLSFR 369

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            + L R+ S  ++    + +ILKGLLIA  N+D++I I+ N       K        L E
Sbjct: 370 EKTLNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKELGLNE 429

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL + +R L  LE  +I++E + L  +  K++ LL + K+   ++  E+R +K+ 
Sbjct: 430 KQANGILAMPMRRLTGLERKKIETEYEELQIKVNKLEILLKNRKEFLAELKKELRSLKKK 489

Query: 486 FSKSTD---LGRRRTTFCEVSRADKATLQQAMIE----------------KEPITVVISN 526
           +        +G+  T    +        +Q +++                 +   + ++ 
Sbjct: 490 YGDKRRTRIIGKDTTKINNIETQKLDVPKQPILQSKKKISHTPKQLNLNLSKDSILEMTY 549

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           +G +   K            E   L  +      ++I++++ +GKAY +   ++      
Sbjct: 550 QGEVAWRKPEDRGF------ENKLLIYSEIIGEREQIIVITDNGKAYPIKILDIPYIDVQ 603

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              +  L+  N  +D  +               LL+++++G    ++ SE+ + T +G +
Sbjct: 604 STFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTNQGKIKRIQLSELNSLTNRGLS 663

Query: 641 FLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDGG 696
            +K+ +++ +K +  V   D + +   + +LL F +  ++IP M+R  +G +    +   
Sbjct: 664 LMKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNEEIPVMNRNTQGEQAFRLRS-K 722

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
              V C  + +    +  +   Y +  N L   + K G +G+   K
Sbjct: 723 EEIVGCINMNKKDDILLVSKLGYGKRLNVLDLRITKLGDIGTQALK 768


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/820 (29%), Positives = 399/820 (48%), Gaps = 96/820 (11%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++S      + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+
Sbjct: 1   MTDSIQFNGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     F+KSAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D
Sbjct: 61  GLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDND 120

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  V+ + +L+ + E+ VDF   ++    EP V P++ P LL NG SGI
Sbjct: 121 PPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++ S + I+++Y
Sbjct: 181 AVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGS-QGILDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             GRG   VR    +EE+  G        I+VTE+PYQV K+  IEK+A+L+   ++  +
Sbjct: 240 LEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R    D ++E ++  + +++ F   +  +     PQ + L 
Sbjct: 300 ADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIV-EGQPQQLSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+++L+ R   L RR    ++  +RR+ IL+GLL +  ++D +I I+R        + 
Sbjct: 359 QLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +   F L E Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +
Sbjct: 419 RLQVHFDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKAL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE------------------- 516
             ++R++K  F        RRT   E+     A  +Q                       
Sbjct: 479 KKDLRDLKRRFGSP-----RRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGEL 533

Query: 517 -----------------------KEPITVVISNRGWIRSLKSHSVD-----LSALHFKEG 548
                                  +E   + +S+R  +++  +  ++      S    +  
Sbjct: 534 IFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKSGAQER-T 592

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D  K+   A     +L+++ +G+AY      +  G      I  L+        + A + 
Sbjct: 593 DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG-----PIANLLPTGRQSTAIAATLL 647

Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
                    LL++SS+G    +  +E+   + +G   LK++ EE ++           ++
Sbjct: 648 LPLASEERSLLLLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLL 707

Query: 665 GENRK------------LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
           G +                         +SRG+  RL   ++G    + C  +  G   +
Sbjct: 708 GSSGGRLLRLSLSELPLASR--------ISRGQ-PRLLRLREGEQP-LGCLSLPSGQDLL 757

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +     L  L + G +G+   +   +  + ++
Sbjct: 758 LVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIA 797



 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 11/164 (6%)

Query: 517 KEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E   +++S++G ++ L         +  L  L   E + ++ A        +LL S+ G
Sbjct: 653 EERSLLLLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +   L    L            L+ L   +  +      S   LL+VS+ G    +    
Sbjct: 713 RLLRLSLSELPLASRISRGQPRLLRLREGEQPLGCLSLPSGQDLLLVSTLGLVKRLPLG- 771

Query: 631 IIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           ++   R G             +++  ++      +A+   +++L
Sbjct: 772 LLRLCRAGDLGNNAFRFTDKRDRLIALLPAPSQGLAIFASDQRL 815


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 202/745 (27%), Positives = 386/745 (51%), Gaps = 29/745 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +    +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G      ++K
Sbjct: 2   DKKIVMSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ +G VIG  HPHGD SVYD++VRL+Q +  R PLI  QGN G+ID D AAA RYTEA
Sbjct: 62  SAKTIGNVIGNYHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYTEA 121

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ +A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP H
Sbjct: 122 RLSPIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPH 181

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ +A +  I +   S+EK++E+I GPDFPTG I VE +E I+ +++ G+G   VR+
Sbjct: 182 NLEEVIDATIYRIKHSNCSLEKIMEFIKGPDFPTGAI-VEGKEGILNAFKHGKGKVIVRS 240

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  + E  +    IV++EIPY+V K+ L+ KI E+   + +  + ++RDES  +   ++ 
Sbjct: 241 KTEIIEE-KNMNKIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRIVI 299

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              + +     +  ++  +D++  +  NM  +   + P +M +  IL  ++ H+ +V+ R
Sbjct: 300 DLKKDISVQNTLNYLYKNTDLQKNYNYNMVAI-KDKRPVLMGILDILDGYIDHQIDVVTR 358

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
            S + +     R  I++GL+ A   +D+++  IR        K  +++++  +E Q +AI
Sbjct: 359 SSIYDLNKAKDRKHIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAKYEFSEKQAEAI 418

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           + L+L  L   +   +++E + L  + + ++++L+S +     I  +++ +K+ +     
Sbjct: 419 VMLQLYRLTNTDIKTLENENEELNEKIKYLNTILDSDEVLRKVIIDQLKNIKKKY----- 473

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548
               R +       +    ++AMI  E + + I+  G+I+ + + S+  S       KE 
Sbjct: 474 -PMPRLSMIRDKIQEVKIDEKAMILSEDVNISITRDGYIKRISNRSIKASEKTPFGKKEN 532

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D L     A+T D +LL S  G    +P   +     +  G+ +  L+ ++ ++ I+ + 
Sbjct: 533 DYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFKWKDPGKHVSYLVKMDSSEKIIASI 592

Query: 607 VYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH- 660
           +         +++ +  G        +    TR  K    + + + +K+  V     D  
Sbjct: 593 LVKDFNLPLYVMIATKNGQIKRTLLKDFE-VTRYSKPLKCIGLKNGDKVVDVKLTNNDQG 651

Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK--ICEGLTWIDSAGR 717
           + +  +     ++S  ++  +  +  G++  + KD  +  +  F   +   L  I  +G 
Sbjct: 652 IILTTKKGYGALYSEQEVSIVGIKALGIKAINLKDDELVSLDTFDPMVDHSLVLISDSGG 711

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPK 742
                 +D+      R   G ++ K
Sbjct: 712 IKRIKISDIKP--CNRATKGVMLFK 734


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/765 (30%), Positives = 392/765 (51%), Gaps = 46/765 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           ++   EE +  + +   +   +L YA S I +RA+PD RDG KPV RRI+++MSEMGL  
Sbjct: 10  TDEDFEERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRP 69

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
                KS+R+VG+V+GKLHPHGD ++YD+LVR+AQPF  R PLI G GNFG+ D D  AA
Sbjct: 70  DRGHVKSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-DLPAA 128

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+   A  ++Q +DED VDF+  Y+ +++EP V PS FPNLL NG +GIAVGMA
Sbjct: 129 MRYTEARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIAVGMA 188

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI  P+ +++ L+ ++ GPD PTGG I+   + I ++Y  GRG
Sbjct: 189 TNMAPHNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTII-GLDGIRDAYAKGRG 247

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            FR+RA+  VE+V      I+VTE+P+ V   R++ KI EL+ AK++  + D++D S   
Sbjct: 248 TFRMRAKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLSDRH 307

Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++        P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ H
Sbjct: 308 KGLNLVIEIKNGFIPEAVLEELYRLTPMEETFGINNVALV-EGQPRTLGLRELLQVYVDH 366

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R +V+ RRS++R +  + R+ +++GL+IA LNIDE+I +IR+ D     +  ++  F L+
Sbjct: 367 RLDVVRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLMEVFELS 426

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q   IL+  LR L + ++ ++  E + L +E  ++ ++L+S  +    ++ E+ +V +
Sbjct: 427 EIQAAYILDTPLRRLTRFDKLELDGEKETLESEIAELTAILSSEDKLRKVVSDELAQVSK 486

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        RRT   E S   +       +  +P  V+ S+ G +      S       
Sbjct: 487 TFGTP-----RRTVLLESSGVTRNASVPLEVADDPCLVLFSSTGLLARTTDASPLAGEGD 541

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--------LSGRGHGEAIQLLIDL 596
               D L   +++     + +++  G+   +   +L              G  +   + L
Sbjct: 542 RSAHDVLVSVVNSTVRGEVGVVTNQGRMIRVQVVDLPTLPPSANPPSLSGGHPVSEYVTL 601

Query: 597 NHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           +  + +V     D     L + +++G    V   +  AN R     + +   + +   V+
Sbjct: 602 SPGETVVGIGSLDPDGPGLALGTAQGVVKRV-VPDYPAN-RDDFEVIGLKDGDTVVGAVE 659

Query: 656 VTGD--HVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICE-- 707
           +T +   +  +    +LL +    +    R      GVRL      G + VI F + +  
Sbjct: 660 LTSEDHDLVFITSEAQLLRYPAVNVRPQGRPAGGMAGVRL-----DGGATVIWFGVVDPA 714

Query: 708 ---------GLTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPK 742
                    G +      +      +D   +  K R   G  V +
Sbjct: 715 RESRVVTIAGSSTALPGTQIGGAKISDYAEYPAKGRATGGVRVQR 759


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 212/552 (38%), Positives = 337/552 (61%), Gaps = 20/552 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPV RRI++ M+E+G+      K
Sbjct: 3   DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTE
Sbjct: 63  KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM+++A  +L+ ++++ VDF+D Y+  + EP+V PS+ PNLL NG +GIAVGMAT+IP 
Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  +A   ++DNPE++  +L+E + GPDFPTGG+++  +  I  +Y  G+G   +R
Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R  +E    G   IVVTE PY V K+++ E I  L   KRI  +  +RDES+ +    +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R    ++++ ++F L+ ++T F  NM  +  G VP+++ L  IL +++AH++EV+ 
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVVV 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ F     + R  IL+GLLIA  ++DE+I IIRN     + +  +++RF LTE Q  A
Sbjct: 361 RRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQA 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RLR L  LE  +I++E D+LLA    +  +L   ++    I  E+ E K  F+ + 
Sbjct: 421 ILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA- 479

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSA 542
               RRT          +   + +IE+E + + +SN+G+I+          K     +  
Sbjct: 480 ----RRTELMVGEV--VSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQG 533

Query: 543 LHFKEGDSLKIA 554
               + D ++  
Sbjct: 534 TGVNDDDFVRDI 545


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/760 (29%), Positives = 399/760 (52%), Gaps = 35/760 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           I NSN   E+ + + +L   + ER+  YA   I+ERA+PD RDG KPV RRI++AM+E+ 
Sbjct: 5   IDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAMNELN 64

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L +   +KKSAR+VGEVIGK HPHGD S+YD++VR++Q +    PLI  QGN G+IDGD+
Sbjct: 65  LTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSIDGDN 124

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE R+ ++++L+L  ++++ V F   +++ + EP V PS FPN+L NG++GIA 
Sbjct: 125 AAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGSTGIAA 184

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT++P HN+ EI +A + LI  P   I+ +LE + GPDFPTGG  V+ R  I +++  
Sbjct: 185 GYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGG-TVQGRNGIKDAFTT 243

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   V ++W  E+       I++ EIPY+V K  L++KI ++I A     + ++RDE+
Sbjct: 244 GKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVRDET 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   +    +   + D + + +F  + +   +  N   +   + P+ + +  ++  ++
Sbjct: 299 DRNGLRIAIDLSDKANLDTVRKFLFKSTPLSISYNYNNVAIVDLQ-PKQLGIIELIHAYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
           AH +EV   R+ F +   ++R+EI+ GL+ A   +D++I++IR+          ++S+F 
Sbjct: 358 AHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISKFV 417

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++ Q  AI+++RL  L   +  ++++E + L     K+ ++LNS +   N+I   +REV
Sbjct: 418 FSQPQAAAIVDMRLYRLTSTDVVKLQNEKEELDVNIAKLKAILNSEEVMDNEIINRLREV 477

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD 539
           K+ F         R +  E S  +    Q+ ++ +    + IS  G++++++S      D
Sbjct: 478 KKQFPTP------RRSIVEDSIENLDVEQKEVLVEHEYNLWISKDGYLKAIESKLISKND 531

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
            +    K  D    A        ++L++  G  Y++P   L     R  G  +  +  ++
Sbjct: 532 PAVFGRKPNDMWIAAGEVSNLQHLILVTNKGTYYSIPLYKLPMSKWRDMGVHVNTIATMD 591

Query: 598 HNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKL 652
            ++ IV+AFV         ++L+ S  GN   +   ++      +    +K+ + +++  
Sbjct: 592 PSEHIVSAFVVKDFAEALQQILITSKNGNIKRIPVKDLETKIFTRAFRIMKLDAVDEIVS 651

Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
              +T       ++  N   + + I+ IP      KGV+  + K+  I   +     + +
Sbjct: 652 ASLITSKTRTCGIITRNGYGVRYHIEDIPVQGTNSKGVKAANLKEDYIVAGLGLTSEDTI 711

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP----KGFP 745
            ++            DL  ++  R   G  V     +G  
Sbjct: 712 MYLTEKDGVKKFRNEDLPIYI--RPKRGIRVLPERKRGTE 749


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/735 (32%), Positives = 370/735 (50%), Gaps = 43/735 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E +  + +   ++  +L YA S I  RA+PD RDG KPV RRI++ M +MGL    A 
Sbjct: 13  VPERIVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRAH 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVR AQPF  R PL+ G GNFG++D   AA  RYT
Sbjct: 73  VKSARVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDAGPAAQ-RYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A L+  G+DED VDF   Y++  +EP V P+ FPNLL NG SGIAVGMAT++P
Sbjct: 132 EARMAPAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNMP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+ +P+  +  L+ ++ GPDFPTGG  V   E I ++Y  GRG FR 
Sbjct: 192 PHNLVEVVNAARHLLKHPDADLPALMRFVPGPDFPTGG-RVVGLEGIRDAYATGRGSFRT 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E++GR    IVVTE+PY     RLIEKIA+ +  K++  + D+ D S       
Sbjct: 251 RASVRIEKIGR-RQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMR 309

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ HR +V
Sbjct: 310 LVIEVKNGFVPEAVLEQLYRLTPMEESFGINNVALV-EGQPRTLGLKELLEVFIGHRVDV 368

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428
           + RR+ FR+     R+ ++ GLL A ++IDE+IAI+R+ D  +     +  RFSL+E Q 
Sbjct: 369 VRRRTRFRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTERFSLSEAQG 428

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+++LR L +    +++ E   L A   ++ ++L+   +    +  E+  V      
Sbjct: 429 RYILDMQLRRLTRFSRIELEREQAELRATIAQLQAILDDEGRLRGLVGDELAAVAAEHGT 488

Query: 489 STDLGRRRTTFCEVSRADK-ATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546
                 RRT     S     A   Q  I  +P  V++S+ G + R+  +  +       +
Sbjct: 489 P-----RRTVLLTSSGPASGAAPTQLEIGDDPCWVLLSSAGLLARTGSAEPLGTEGRRSR 543

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGR---GHGEAIQLLIDLNH 598
             D +  A  A     + +L++ G+   +P  +L      +GR     G  ++  +    
Sbjct: 544 H-DLVVAAAPATARGHVGVLTSAGRLVRVPVLDLPVLPETAGRPNLAGGTGVKEFVTFGK 602

Query: 599 NQDIVTAF------VYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSS----- 646
            +  +T        V D       + ++ G    V    +    R+    + +       
Sbjct: 603 GERALTIVPLPVTGVEDPDDPGFALATAGGVVKRVVLDPL--GNREEVEVITLKDLGPRQ 660

Query: 647 -EEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703
            +E +  V   TG+   V V  + +LL F    +    R   G+       G     +  
Sbjct: 661 RDEVVAAVGLTTGEEELVFVTSDAQLLRFPAALVRPQGRAAAGMAGIKLSAGARVVAMTA 720

Query: 704 KICEGL--TWIDSAG 716
              + +    +  AG
Sbjct: 721 VAPDAVDPVVVTVAG 735


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/762 (28%), Positives = 375/762 (49%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MNEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE+R+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TESRLAKITQEAYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE    G   +V++EIPY        + +  +  L+ AK+   + DI ++S++
Sbjct: 240 KLRGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADG-RPETMGLRQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E++ R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVEN 418

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN
Sbjct: 419 ITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     N I  E+   K+ ++      R R T  E  +  +A  ++  +E++ + +++  
Sbjct: 479 NYDSMTNVIIDELEGYKKAYA------RERRTVIENGK--EAIYEENKVEEQDVILLLDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++   + + +          K  +    T ++ + +  GK + +   ++  G  R
Sbjct: 531 FGYAKTVDVATYERNKEA--ADSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                I  L + +  Q+ +     +      KLL V+ +     V   E + + R     
Sbjct: 589 DKSVPIDNLGNYDSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTT-AA 647

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+++  V+KV    ++ +  E    L F + ++PE  +G  GVR     K   I 
Sbjct: 648 TKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +  F        +D+ G    +  +     L KR G G+  
Sbjct: 708 QIYLFADG-----VDTKGSYQEKEVSLNRLKLNKRDGKGTKT 744


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/755 (29%), Positives = 372/755 (49%), Gaps = 54/755 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   SESQIIRTEYSEVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  +   L  +D++ VDF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 124 EARLTKFTQEAYLGDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A  A + N +IS ++L+ YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 184 PTHNLSEVLDAVKAYMKNDQISTKQLMRYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VEE   G   +V+TEIPY        + +  +  L+ +K+   + DI ++S+++
Sbjct: 243 IRGKVEVEEQKGGKKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKE 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +NM        P+ + L  I++  +  +
Sbjct: 303 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLA-VANDRPETLGLKAIIEHHVDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------ 416
            E++ R+ +  +     R E+ +GL+ A   ID II I+R     K              
Sbjct: 362 FELMTRKYTTMLAKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVSGVTENI 421

Query: 417 ---------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                    M +    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+
Sbjct: 422 KFKSSISKKMAALLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISRYEDILNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                N I  E+   K  +      GR+R T  E   A++A  ++  IE++ +  ++   
Sbjct: 482 YDSMANLIMEELDSYKREY------GRKRRTAIE--NAEEAVFEEKKIEEQEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ +++   + + +          K  +H   T +I + +  G+ +     +L  G  R 
Sbjct: 534 GYAKTIDVTAYERNKEA--ADSENKYVVHCMNTGKICIFTDTGRMHQAKVLDLPYGKFRD 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            G  I  L + + +++ +   V D+      KLL  + +G    VE +E     R     
Sbjct: 592 KGTPIDNLTNYSSSEEQI-VMVCDAEQMRFAKLLFATKQGMIKKVEGTEFQVAKRT-IAA 649

Query: 642 LKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+ +  V V     ++ +  +    L F  ++IPE  +G  GVR     K   + 
Sbjct: 650 TKLQEEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPEKKKGAVGVRGIKLQKKDELE 709

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +V  F+              Y   E  L      R
Sbjct: 710 NVYLFEEG------TEKKIVYGEKEVTLNRLRQAR 738


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/780 (30%), Positives = 387/780 (49%), Gaps = 56/780 (7%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M        ++   E ++ + +   ++  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MATPTKPTPDSPAGERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KS+R+VG+V+GKLHPHGD S+YD++VRL Q F+ R PLI G GNFG+
Sbjct: 61  MSEMGLRPEKGHVKSSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   ++P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  L+ +P+ S+E+L++++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMAPHNLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKII-GLAGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RA+  VE +      +VVTE+PY V   R+IEKI + + AK+I  + D
Sbjct: 239 DAYANGRGAFKTRAKVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISD 298

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +  +    ++        PD ++E ++ L+ +E  F +N   L  G  PQ + L  
Sbjct: 299 VTDLTDRNHGLRLVIGIKTGFSPDAVLEQLYRLTPLEDNFSINAVTLVDG-RPQTLGLKA 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V+ RRS+FR+     R+ +++GLL+A ++IDE+I +IR  D     +  
Sbjct: 358 LLEVFLKHRLQVVTRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +   F L+E Q + IL LRLR L K    ++++E D L AE  ++++LL+        ++
Sbjct: 418 LRDVFDLSELQAEYILELRLRRLTKFSRIELEAEADKLRAEIARLEALLSDDTLIRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA--------MIEKEPITVVISNRG 528
            E+ +V + F        RRT   E   +   T + A         I  +P  V++S  G
Sbjct: 478 DELEQVADKFGTP-----RRTLLTEAPASIATTSRSAARKNLPVLEIADDPCVVLLSTTG 532

Query: 529 WIRSLKSHSVD--LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---- 582
            +  +     D  L+A    + D+++  +   +   I  ++  G+     A +L S    
Sbjct: 533 RVIRVAVAEGDSLLAAPRRSKHDAIRSRVTTTSRTEIGAITNRGRLIRFTAMDLPSVPSS 592

Query: 583 --GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV------EESEIIAN 634
                 G  I   + +   + ++     DS   + + +  G    V       + E    
Sbjct: 593 SVQLDAGAKINEYLAIESKERVLALVSLDSDQPIALGTRLGTVKRVIPGGWPSKPEFE-- 650

Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY 692
                  + +   +++        D  +  +  N +LL FS   +        G+     
Sbjct: 651 ------VIALKDGDELVGAAHSPDDSELTFITSNTQLLHFSASAVRPQGLTAGGMAGVRV 704

Query: 693 KDGGISDVICFKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
             G  + VI F   +  +    +  +G S   +  D        G       + FP  G+
Sbjct: 705 DAG--ASVIFFDAIDAGSAPIAVTVSGSSATIAGTDP-------GRAKVSAFEQFPAKGR 755


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/738 (29%), Positives = 359/738 (48%), Gaps = 51/738 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI+  MS MGL     
Sbjct: 21  LEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRG 80

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA RY
Sbjct: 81  HVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT++
Sbjct: 140 TEARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNM 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN++E+   A  L+ +PE  +E ++ +I GPD P+GG  +   + + ++Y  GRG FR
Sbjct: 200 APHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGG-RIVGLDGVRDAYATGRGTFR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
           +RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D +   +  
Sbjct: 259 MRAAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGL 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +        +P  ++ +++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR +
Sbjct: 319 RLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQ-PQTLGLLPLLRVYVDHRLD 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D     +  ++  F LT+ Q
Sbjct: 378 VVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQVQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +   
Sbjct: 438 ADHILELRLRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEHG 497

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ----------------QAMIEKEPITVVISNRG-WI 530
                  RRT   E   A                        M+       ++S  G  +
Sbjct: 498 D-----DRRTVLLEAETAAAPAAGPAPSGPTPAGAAEAGVDLMVPDTACWALLSTSGRLL 552

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------S 582
           R+     +       K  D+    +       I  L++ G  + L A +L          
Sbjct: 553 RTADRTPIAPQGRRRKH-DAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGEPSAAP 611

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRKGKT 640
                     L+ L   + +V     D+    ++   ++ G    V         R+   
Sbjct: 612 AMTAALPAAELVPLAKGETLVALVPLDT----VMALGTAHGVVKRVRPE--WPLNRQVVD 665

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI 697
            + +   + +          D +  +    +LL ++   +      G GV       G  
Sbjct: 666 AVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAG-- 723

Query: 698 SDVICFKICEGLTWIDSA 715
             V+ F +    +  ++ 
Sbjct: 724 DTVLAFGVAPAASLTETG 741


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/744 (28%), Positives = 384/744 (51%), Gaps = 27/744 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +++  + +   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM      +   
Sbjct: 1   MSHDSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+ VG VIG  HPHGD SVY+++VR++Q +    PLI  QGN G+ID D AAA RY
Sbjct: 61  YRKSAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++++++ +L+ +DE+ V F   +++  +EP V P+++PNLL NG++GIA G AT+I
Sbjct: 121 TEARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N+ EI +A++  + NP  S+E+++  + GPDFPTG I ++ +E I +  R G+G   
Sbjct: 181 PPFNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGAI-IQGQEGIEDIIRKGKGRIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAED 308
           VRA+  + E  +    IV+TE+PY+V KS ++ KI EL   K       + D+RDES   
Sbjct: 240 VRAKAEIVE-NKSMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRT 298

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + + ++   +  ++++  +  NM  +     P+V  L  +L  +L  R
Sbjct: 299 GLRIVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQ-RPKVCGLLEVLDAYLKFR 357

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTE 425
           +EV+  RS +R +  ++R+ IL+GL+ A  N+DEIIA+IR+ +   + +  +++ F  TE
Sbjct: 358 QEVVLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTE 417

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AI++L+L  L   +   ++ E   L  E E +D ++N+     N I  E  E+KE 
Sbjct: 418 AQATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEA 477

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542
           F         R +  E   ++      ++I  E + V +S  G+++ +   S   S    
Sbjct: 478 FDTP------RRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDV 531

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600
           +   + D    +    TTD ++ +++ G+   +    +     R  G  I   +  + N+
Sbjct: 532 IALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSHINQYMKCDPNE 591

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKMKLVVKV 656
            I++ F    +D+   ++  ++ G       SE+           +K+   +++   V  
Sbjct: 592 KIISVFTLKSFDTYRFIVTSTASGMIKKTAISELEVKRTNRLYDVMKLGKHDELVGAVIT 651

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           + D H+ +V +  + +   + +I  +  R KGV     K      V    + +    +  
Sbjct: 652 SNDEHLLLVSKEGQCMRLDLAEINPIGLRAKGVIGMKLKLND-RVVSTMGLSDESEVVFV 710

Query: 715 AGRSYNRSENDLLGWLGKRGGVGS 738
           + R   +        +  R   G+
Sbjct: 711 SDRFQMKRIKAQDIAINNRATQGT 734


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 196/687 (28%), Positives = 353/687 (51%), Gaps = 27/687 (3%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP
Sbjct: 61  EARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIP 120

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   V
Sbjct: 121 PHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVV 179

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++  +E++  G   IV+ EIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +
Sbjct: 180 RSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRI 239

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+
Sbjct: 240 AIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVI 298

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
             RS F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +
Sbjct: 299 LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAE 358

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+  
Sbjct: 359 AIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 418

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFK 546
                 R +  E +         ++I +E   V ++  G+I+     S   S L     +
Sbjct: 419 ------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 472

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIV 603
           + D L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N++I+
Sbjct: 473 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 532

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSE-EKMKLVVKV 656
              V   +D       V+  G    VE  E         K   + K+  + +++  V  +
Sbjct: 533 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 592

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D V +V +N   L F+I+++P +  +  GV+  + K+  +              +   
Sbjct: 593 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFICNTSSFYLLTQ- 651

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
            R   +  +        R   G  V +
Sbjct: 652 -RGSLKRVSIEEILATSRAKRGLQVLR 677


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 186/640 (29%), Positives = 293/640 (45%), Gaps = 66/640 (10%)

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           T  I +  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKI
Sbjct: 61  TAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKI 119

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           AEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++  F +NM  L
Sbjct: 120 AELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL 179

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID II +
Sbjct: 180 -HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIEL 238

Query: 407 IRNEDKPKPV-------------------------------------MVSRFSLTENQVD 429
           IR+   P                                            + LTE Q  
Sbjct: 239 IRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQ 298

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E F   
Sbjct: 299 AILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDK 358

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLS 541
                RRT   E++        + +I +E + V +S++G+++          +      S
Sbjct: 359 -----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKS 410

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599
           A   KE D +   L A+T D IL  S+ G+ Y++    L        G  I  L+ L  +
Sbjct: 411 AARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQD 470

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I        ++   K+ + ++ G       +E       GK  +K+   +++  V   
Sbjct: 471 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT 530

Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL-TWID 713
           +G D V +     K++ F    +  M     GVR     +G    V+   +  G    + 
Sbjct: 531 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG--DKVVSLIVPRGDGAILT 588

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    Y +           R   G +  K   R+G  + +
Sbjct: 589 ATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 628



 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 468 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 527

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 528 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 584

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 585 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 644

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 645 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 696


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 249/729 (34%), Positives = 395/729 (54%), Gaps = 56/729 (7%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
            + YL YA+S I  RAIPD+RDG KPV RRI++AM EM L     FKK ARIVG+ +G+ 
Sbjct: 13  RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGDQ++YD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RYTEA+++++   +L+ 
Sbjct: 73  HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           ++ D VDF   ++E   EP V P+K PNLL NGT+GIAVG+ATSIP HN++E+C+A +AL
Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192

Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
             N +I++E+L++YI GPDFPTGGIIV       E Y+ GRG   V+A+  VE+   G  
Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVGEVS--PEVYKTGRGQVTVQAKARVEKTSSGRE 250

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            I++TEIPY V K+ LI+KIAEL  + ++  + D+RDES ++   ++    R    + ++
Sbjct: 251 QIIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVL 310

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++  + +   FP+NM  L  G  P+++ L  IL E+  HR  V++RR+ F ++  + R
Sbjct: 311 KKLYKNTSLRKNFPINMVALV-GLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEER 369

Query: 387 VEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + I++GLLI   +ID+II  IR      + K  ++S ++LTE Q  AIL+LRL+ L  LE
Sbjct: 370 LHIVEGLLICIKDIDKIIETIRASQDTQEAKEKLMSGWNLTEKQAQAILDLRLQRLTSLE 429

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             +++ E D L+   +   ++L + +++ N    E +E+ + F         R TF E  
Sbjct: 430 TSKLQKEHDELIENIKTYKNILENKQERINIFIKETKELADRFKDP------RRTFIEGM 483

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHA 557
                     + E   + V ++  G+++ +      KS  V++++L F EG         
Sbjct: 484 ----------IKEDTYVDVFVTRNGFVKPIELLEEEKSPIVNVASLKFTEG--------- 524

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLV 616
                + ++S  G+ Y       LSG             + ++ +V AFV +    +LL+
Sbjct: 525 -----LFIVSNKGRVYWTAGSEALSGSSIHMK-------DTDEHVVGAFVREQYNSRLLI 572

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSI 675
           +++KG+   +   E    T +G   LK+S  E++  +        + ++ +   +     
Sbjct: 573 LTNKGSIKKIPLVEFEYKT-QGFQILKLSEGEEVVYISGSQDESEILILTKKGYINRIQT 631

Query: 676 DQI-PEMSRGKGVRLQSYKDGGIS-DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
             +    S  K ++     +   +  V           I   G +      D+      R
Sbjct: 632 QDVGATTSSSKAIQCIKLNENDEAISVRALDDKIFGLLITEEGYAKKIKLEDIPKK--SR 689

Query: 734 GGVGSLVPK 742
              G  V K
Sbjct: 690 TSQGINVLK 698


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/762 (29%), Positives = 385/762 (50%), Gaps = 53/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MEESQIIRTEYSELMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D +DF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ EI +A  A + N +I+ ++L++YI GPDFPTGGI+V +++ + E Y  G G  
Sbjct: 181 IPTHNLGEIVDAVKAYMKNNDITTKQLMKYIKGPDFPTGGIVV-NKDDLAEIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   IV++EIPY        + +  +  L+  K+   + DI ++S++
Sbjct: 240 KIRGKVDVEEIKGGRKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  D D L+  ++  + +E  F +NM  ++ G  P+V+ L  I++  +  
Sbjct: 300 EGIRIVIEVKRDADVDNLINMLYKKTRLEDTFGVNMLAVADG-RPEVLGLKRIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI--------------------- 406
           + E+  R+    ++    + EI +GL+ A   ID II I                     
Sbjct: 359 QFELATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATEK 418

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           I+ + K    M S    T+ Q  AIL +RL  L  LE   +  E +  LA   K + +LN
Sbjct: 419 IKFKSKRSEKMASMLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ ++       +R T  E   A++A  ++  ++++ + +++  
Sbjct: 479 NYDSMAQVIIDDLDALKKEYAV------KRKTKIE--NAEEAVFEENKVQEQEVVLLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++     + +          K  L    T ++ L ++DGK + +   +L  G  R
Sbjct: 531 FGYAKTVDGSVYERNREA--ADKENKYILRCMNTGKLCLFTSDGKMHQIKVMDLPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  + + +  ++ +     D      K L V+ +G    V  SE    T++    
Sbjct: 589 DKGFPIDNVSNFDSTKEEIVYLCDDRELFFSKFLFVTKQGMIKKVAGSEFQ-VTKRTIAA 647

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+ +  +  +     V ++ EN  +L F  +++ E  +G  GVR     K+  + 
Sbjct: 648 TKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPAEEVSEKKKGAVGVRGMKLQKNDSVE 707

Query: 699 DVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           +V  F+   E          + NR +        KR G G+ 
Sbjct: 708 EVYLFEEGTESKVIFHEKEVTLNRLK------RAKRDGTGTR 743


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/738 (29%), Positives = 359/738 (48%), Gaps = 51/738 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ MS MGL     
Sbjct: 21  LEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRMGLRPDRG 80

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KSAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R P++ G GNFG++D D  AA RY
Sbjct: 81  HVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRY 139

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM   A  +   +DE  VDF   Y+ +  +P V P+ +PNLL NGT+GIAVGMAT++
Sbjct: 140 TEARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIAVGMATNM 199

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN++E+   A  L+ +P   +E ++ +I GPD P+GG  +   + + ++Y  GRG FR
Sbjct: 200 APHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGG-RIVGLDGVRDAYATGRGTFR 258

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
           +RA   VE+V      +VVTE+PY V   ++IE+I   + AK++  + D+ D +   +  
Sbjct: 259 MRAAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGL 318

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            +        +P  ++ +++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR +
Sbjct: 319 RLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQ-PQTLGLLPLLRVYVDHRLD 377

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+  R+     R+ +++GLL+A ++IDE+I IIR+ D     +  ++  F LT+ Q
Sbjct: 378 VVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQVQ 437

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D IL LRLR L K    ++++E D L A   +++++L S  +    ++ E++ V +   
Sbjct: 438 ADHILELRLRQLTKFSRIELEAERDELQAAIAELEAILASDARLREVVSSELQAVADEHG 497

Query: 488 KSTDLGRRRTTFCEVSRADKATLQ----------------QAMIEKEPITVVISNRG-WI 530
                  RRT   E   A                        M+       ++S  G  +
Sbjct: 498 D-----DRRTVLLEAETAAAPAAGPAPSGPTPAGAGQAGADLMVPDTACWALLSTSGRLL 552

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--------S 582
           R+     +       K  D+    +       I  L++ G  + L A +L          
Sbjct: 553 RTADRTPIAPQGRRRKH-DAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGEPSAAP 611

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKGNAFIVEESEIIANTRKGKT 640
                     L+ L   + +V     D+    ++   ++ G    V         R+   
Sbjct: 612 AMTAALPAAELVPLAKGETLVALVPLDT----VMALGTAHGVVKRVRPE--WPLNRQVVD 665

Query: 641 FLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI 697
            + +   + +          D +  +    +LL ++   +      G GV       G  
Sbjct: 666 AVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAG-- 723

Query: 698 SDVICFKICEGLTWIDSA 715
             V+ F +    +  ++ 
Sbjct: 724 DTVLAFGVAPAASLTETG 741


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/760 (29%), Positives = 373/760 (49%), Gaps = 45/760 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +++  V +   +E  +L YA S I  RA+PD RDG KPV RRII+ M +MGL      
Sbjct: 1   MADHIVDVDVSQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS+RIVG+V+GKLHPH D ++YD+LVRL+Q FV R PL+ G GNFG +D D  AA RYT
Sbjct: 61  VKSSRIVGDVMGKLHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYT 119

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  ++ G+DED VDF   Y+   ++P V PS FPNLL NG SGIAVGMAT++ 
Sbjct: 120 EARLDDAALTMIAGLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMA 179

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+  AA  LI+NP+ ++ +L+ Y+ GPD PTGG  +   +SI E+Y  GRG FR 
Sbjct: 180 PHNPGEVIAAARHLIENPQATVSELMRYVPGPDLPTGG-RIIGLDSIREAYETGRGTFRT 238

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA    E +      IVVTE+PY V   R+IEK+ + + AKR+  +  I D S       
Sbjct: 239 RATVKFENITARRKGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLR 298

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P+ ++E ++ L+ ME  F +N   L     P+ + L  +L+ ++ HR  +
Sbjct: 299 LVIGIKNGFNPEAVLEELYRLTPMEDSFGINNVCLV-EGQPRTLGLKPLLEVFVDHRISI 357

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RR+ F++     R+ +++GLLIA L+IDE++ +IR+ D     +  ++  F L+E Q 
Sbjct: 358 TRRRTVFQLGKAKDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLMDVFDLSEIQA 417

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+L+LR L K    ++++E D L +  E +  +L+   +    ++ E++E  +    
Sbjct: 418 TYILDLQLRRLTKFSRIELEAERDELKSRIEYLQGILDDDDKLRALVSDELQETSDRIDS 477

Query: 489 STDLGRRRTTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
                 RRT   E +  +    +   +  +  EP  V+ S    +          +    
Sbjct: 478 P-----RRTVLVEGNLKELRAAKKGTKLTVADEPCWVLFSTSQRLARTTGQEPLSAQGRR 532

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGR---GHGEAIQLLIDLN 597
              D+L   +   +   I  ++  G+   +   +L      + R     G  +     L 
Sbjct: 533 ASHDALVSQIATTSRSTIAAVTNTGRVVGVDVVSLPQLPPQAARPTVAGGVRVSEYFTLE 592

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VV 654
            N+ ++     D   + +V + +G    +  ++     + G T + +  ++++       
Sbjct: 593 KNEKVIGLI--DPERECVVGTKQGVIKRINGNDQF---KDGSTLINLKPKDEIVGLAQPE 647

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE----GL 709
            +       +  N +LL F ++ +        GV          + VI F   +      
Sbjct: 648 DLNTHSAVFITSNAQLLAFDLEGVRAQGYAASGVAGIRVASD--AHVIGFYAVDSHQPNQ 705

Query: 710 TWIDSAGRSY------NRSENDLLGWLGK-RGGVGSLVPK 742
               + G ++      +   +D   +  K RG  G    +
Sbjct: 706 VVTIATGVNFDGKPTQSIKVSDFNEFPHKGRGTGGVRAHR 745


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/763 (29%), Positives = 382/763 (50%), Gaps = 55/763 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDIMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ + +    +D+  VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKLTQEVFLADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ ++L+++I GPDFPTGGI+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMKNSEITTKQLMKHIKGPDFPTGGIVV-NKDDLLNIYETGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   +V++EIPY        + +  +A L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVEVEELKGGKKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ M L  I++  +  
Sbjct: 300 EGIRIVLELRKDADVENLKNMLYKKTRLEDTFGVNMLAVANGK-PETMGLKSIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + +V  R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFDVATRKYKTLLAKELDKKEIQEGLIKACNVIDLIIEILRGSKSIKEAKACLTDGITEN 418

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M S    TE Q  AIL +RL  L  LE   +++E +  L    + + +LN
Sbjct: 419 IKFKSNISKKMASMLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ ++      R+R T  E   A++A  ++  IE++ +  ++  
Sbjct: 479 NYDSMAEVIIEDLDAIKKTYA------RKRRTIVE--NAEEAVFEEKKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ R++   + + +          K  +    T +I L +  GK + +   ++  G  R
Sbjct: 531 FGYARTVDVSTYERNREA--ADSENKYIVSCLNTGKICLFTNAGKMHQVKVPDIPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G  I  L + N  ++ +  FV D       KLL  + +G    V+ SE     R    
Sbjct: 589 DKGTPIDNLSNYNSTEEQI-VFVCDEGSLSMAKLLFATKQGMLKQVDGSEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGI 697
             K+  E+++  V V   G  + +   N   L F+  ++PE  +G  GVR     K   +
Sbjct: 647 ATKLLEEDEVICVQVVTEGQSIVLQTMNGYFLRFASTEVPEKKKGAVGVRGIKLQKKDEL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSL 739
             V   +       +      Y   E  L    L +R G+G+ 
Sbjct: 707 EQVYLLEEGVEQKVL------YKEKEVTLNRLKLARRDGIGTK 743


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/820 (28%), Positives = 397/820 (48%), Gaps = 96/820 (11%)

Query: 6   ISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           +++S      + +   +L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+
Sbjct: 1   MTDSIQFNGADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 60

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           GL     F+KSAR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYPL++G GNFG+ID D
Sbjct: 61  GLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDND 120

Query: 125 SAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AA RYTE R+  V+ + +L+ + E+ VDF   ++    EP V P++ P LL NG SGI
Sbjct: 121 PPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ EI +A +ALID P++S   LL Y+ GPDFPTGG ++ S + I+++Y
Sbjct: 181 AVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGS-QGILDAY 239

Query: 244 RLGRGGFRVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             GRG   VR    +EE+  G        I+VTE+PYQV K+  IEK+A+L+   ++  +
Sbjct: 240 LEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGI 299

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            DIRDES  +   V+    R    D ++E ++  + +++ F   +  +     PQ + L 
Sbjct: 300 ADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIV-EGQPQQLSLK 358

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L+++L+ R   L RR    ++  +RR+ IL+GLL +  ++D +I I+R        + 
Sbjct: 359 QLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARA 418

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +   F L E Q DA+L++ +R +  LE+ Q++ E  NL  ++ ++ +LL         +
Sbjct: 419 RLQVHFDLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKAL 478

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE------------------- 516
             ++R++K  F         RT   E+     A  +Q                       
Sbjct: 479 KKDLRDLKRRFGSP-----HRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGEL 533

Query: 517 -----------------------KEPITVVISNRGWIRSLKSHSVD-----LSALHFKEG 548
                                  +E   + +S+R  +++  +  ++      S    +  
Sbjct: 534 IFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKSGAQER-T 592

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           D  K+   A     +L+++ +G+AY      +  G      I  L+        + A + 
Sbjct: 593 DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG-----PIANLLPTGRQSTAIAATLL 647

Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
                    LL +SS+G    +  +E+   + +G   LK++ EE ++           ++
Sbjct: 648 LPLASEERSLLPLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLL 707

Query: 665 GENRK------------LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712
           G +                         +SRG+  RL   ++G    + C  +  G   +
Sbjct: 708 GSSGGRLLRLSLSELPLASR--------ISRGQ-PRLLRLREGEQP-LGCLSLPSGQDLL 757

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
             +     +     L  L + G +G+   +   +  + ++
Sbjct: 758 LVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFTDKRDRLIA 797



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 517 KEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           +E   + +S++G ++ L         +  L  L   E + ++ A        +LL S+ G
Sbjct: 653 EERSLLPLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGG 712

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +   L    L            L+ L   +  +      S   LL+VS+ G    +    
Sbjct: 713 RLLRLSLSELPLASRISRGQPRLLRLREGEQPLGCLSLPSGQDLLLVSTLGLVKRLPLG- 771

Query: 631 IIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVAVVGENRKL 670
           ++   R G             +++  ++      +A+   +++L
Sbjct: 772 LLRLCRAGDLGNNAFRFTDKRDRLIALLPAPSQGLAIFASDQRL 815


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/772 (30%), Positives = 396/772 (51%), Gaps = 56/772 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G        ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L  G+ PQ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQ-PQQLSLRRLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  ++  +IA+I+          S      
Sbjct: 359 DYRELTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L AE++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQRLKLLLDNRDQLLDALVQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F+       RRT   E      A    +      +              ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAASQRPNAELQRRQALEALPPDSRILIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           ++ +    +    LH  E    GD     +I L      ++L ++  G+   +    AG 
Sbjct: 534 VKVISPQLMGR--LHLNEPTALGDEPSPARIILPIKPVAKLLAVTASGRVALIRWEFAGQ 591

Query: 580 LLSGRG-------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                         G+ +  ++ L   +    A    S   L ++SS G    +   E++
Sbjct: 592 QPGSLERFLPTALQGDPVVSVLQLPDAEADSNAAAVSS---LGLLSSDGRFKRLAMQELL 648

Query: 633 ANTRKGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-V 687
             + +  + +K+    ++K  V+   G  ++++ +  ++L   + +  +P M +  +G V
Sbjct: 649 DLSGRAASVVKLKEGIELKTAVICQEGGALSLISDLGRVLHLPVSEANLPLMGKLAQGPV 708

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            ++   +  +   +     +    +  + +   +S         +RG +G +
Sbjct: 709 TMRLLPEESLIAAVATNPDQQDPLLLFSRQGRIKSLARDAVRACQRGDLGVI 760


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/713 (30%), Positives = 360/713 (50%), Gaps = 36/713 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    + +  T   EN+  V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MVKKTVDDDFT---ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYT 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MG+       KSAR+VG+V+G+LHPH D ++YD+LVR AQP+  R PL+ G GNFG+
Sbjct: 58  MGDMGVRPDRPHVKSARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D   AA  RYTE RM      ++ G+DED VDF   Y+ +++EP V P+ FPNLL NG 
Sbjct: 118 LDAGPAA-MRYTECRMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGA 176

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ EI  A   ++D+P+  +++++ ++ GPD PTGG  +   + + 
Sbjct: 177 SGIAVGMATNIPPHNLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGG-RIIGLDGVA 235

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG F++RA   +E+V      IVVTE+PY V   R+I++I  L+ +K+I  + D
Sbjct: 236 DAYRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIAD 295

Query: 301 IRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +   +   ++      ++P+ L+E ++ L+ +E  F  N   L     P+ + L  
Sbjct: 296 VKDLTDLANGTRLVIEVKNGINPEALLERLYKLTKLEDSFATNAVCLV-EGQPRTLGLID 354

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR EV  RR+ F++     R+ +++GLL+A ++ID++IAIIR+ +     +  
Sbjct: 355 MLQVYLDHRLEVTLRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTR 414

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L E Q + IL+++LR L K    +++SE D L    E +  + N   +    ++
Sbjct: 415 VMEAFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGLTLIANDKTELRRVVS 474

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EV   +        RRT     + +  A      +  +P  V++S  G +  + S 
Sbjct: 475 GELAEVSAKYGTP-----RRTVLLGAAPSVAAASVPLEVPDDPCWVLLSATGLLARIDSA 529

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
               +       D +  +          ++++ G+       +L S            G 
Sbjct: 530 DNLPATGDRASHDVIISSTRTTARGDFGIITSAGRLVRAHVVDLASLPMTATAPSVAGGT 589

Query: 589 AIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGK---TFLKV 644
            +  L+ L  ++  +           L + +  G    V    +      GK     + +
Sbjct: 590 PLADLVGLEKDERALAVTSLSGKGPSLALGTRNGIVKRVNPELL------GKDSWEIIGL 643

Query: 645 SSEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
              +++     +      +  V +   LL F    +    R G GV     KD
Sbjct: 644 KDGDEVVGALELDDDDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKD 696


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/762 (28%), Positives = 374/762 (49%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E+ V        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MNEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE+R+ ++ + +    +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TESRLAKITQEVYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N EI+ E+LL Y+ GPDFPTGGI+V +++ +   Y  G G  
Sbjct: 181 IPTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVV-NKDDLPSIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE    G   +V++EIPY        + +  +  L+ AK+   + DI ++S++
Sbjct: 240 KLRGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADG-RPETMGLRQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E++ R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVEN 418

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   +  E +  L   EK + +LN
Sbjct: 419 ITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +     N I  E+   K+ ++      R R T  E  +  +A  ++  +E++ + +++  
Sbjct: 479 NYDSMTNVIIDELEGYKKAYA------RERRTVIENGK--EAIYEENKVEEQDVILLLDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++   + + +          K  +    T ++ + +  GK + +   ++  G  R
Sbjct: 531 FGYAKTVDVATYERNKEA--ADSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                I  L + +  Q+ +     +      KLL V+ +     V   E + + R     
Sbjct: 589 DKSVPIDNLGNYDSAQEEIVYLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRTT-AA 647

Query: 642 LKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+   +++  ++KV    ++ +  E    L F + ++PE  +G  GVR     K   I 
Sbjct: 648 TKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +  F        +D+ G    +  +     L KR G G+  
Sbjct: 708 QIYLFADG-----VDTKGSYQEKEVSLNRLKLNKRDGKGTKT 744


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 380/762 (49%), Gaps = 45/762 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +  V +   ++  YL YA S I  RA+PD RDG KPV RRI++ MSE  L     F 
Sbjct: 13  EERIVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGMSEQRLTPDHPFV 72

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+VG+V+GKLHPHGD ++YD+LVR+ Q +  R  L+ G GNFG++D   AA  RYTE
Sbjct: 73  KCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSLDAGPAA-MRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+   A  +L G+ ED VDFR  Y+ +  EP V P+ FPNLL NG +GIAVGMAT+IPS
Sbjct: 132 CRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGATGIAVGMATNIPS 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP   +++L+ Y+ GPD PTGG IV   + I  +Y  GRG FR R
Sbjct: 192 HNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIV-GLDGIRAAYATGRGIFRTR 250

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312
           A   +E+V      IV+TE+P+ V   ++I++I  L+ +K+I  + D++D +       +
Sbjct: 251 ATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVKDLTDLTYGLRL 310

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +      ++P+ L+  ++  + +E  F +N   L  G+ P+ M L  +L+ +L HR EV+
Sbjct: 311 VIEVKNGINPEALLAQLYKHTKLEDSFGINAVALVDGQ-PRTMTLKEMLQVYLDHRLEVI 369

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RR+ F++     R+ +++GLL+A ++ID++IAIIR+ D   + +  ++  F L E Q +
Sbjct: 370 LRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLMETFELDEIQAN 429

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+++LR L KL   ++++E D L     ++  L++    Q + +A ++ E+   +   
Sbjct: 430 YILDMQLRRLTKLSRIELETERDELRRRITELTELIDDPDLQRDTVASQLSEMAATYGSP 489

Query: 490 TDLGRRRTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKS-------HSVDLS 541
                RRT   E S  A     Q   I  +P  V++S+ G +  +           +  S
Sbjct: 490 -----RRTVLLEGSGAAAALPAQPLEIPDDPCWVMMSSTGLMARMTRPADGDDPGHLPTS 544

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--------GEAIQLL 593
               +  D +  A+      +  +L++ G+     A +L    G         G  ++ L
Sbjct: 545 GPRGRH-DVVVAAIAVTAHAQFGVLTSHGRLVKAEAIDLPEVVGTANAPSLRGGSRVEDL 603

Query: 594 IDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L   +  V           L + + +G    V    +   ++     +++   +++  
Sbjct: 604 LVLTDAERAVGLTTLAEDSAGLALGTRRGVVKRVNPEVL---SKDEWDVIRLEDNDEVVG 660

Query: 653 VVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---------ISDV 700
            V++T   D +  V  + +LL F+ D +    R G GV       G           +D 
Sbjct: 661 GVELTDPSDELVFVTSDAQLLHFAADLVRPQGRSGGGVAGVRLTGGSSVVWFGVSPATDA 720

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +   +    + +  A     +           R   G    +
Sbjct: 721 VVVTLSGTSSMLPGAQTGSVKVTPFEDYPPKGRATGGVRCHR 762


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 332/841 (39%), Positives = 452/841 (53%), Gaps = 125/841 (14%)

Query: 6   ISNSNTL--VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S++ T   ++ N  +  LR AL ERYL YALSTI  RA+PD RDG KPVHRRI+ AM E
Sbjct: 1   MSDTTTPPELDPNDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + L     F+KSA+I G+V+G  HPHGD ++YD++ RLAQ F  RYPL+ GQGNFGNIDG
Sbjct: 61  LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D+ AA RYTEARMT VAE +L+G++E+AVD+R+ Y+   +EPVV P++FPNLLANG+SGI
Sbjct: 121 DNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSSGI 180

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMAT+IP HN+ E+C+A + LI  P+   E LL Y+ GPDFPTGG+IVE  E+I  +Y
Sbjct: 181 AVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIANAY 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R GRG FR+R RW VE++GRG+W IVVTEIPYQVQKS+LIEKIAELI AK+IP+L D+RD
Sbjct: 241 RTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADVRD 300

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ESAEDVR+++ P+++++DP +LM  +F  SD+E RF LNMNVL  G+ P+V  L  +L+ 
Sbjct: 301 ESAEDVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVLRA 360

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
           +L HRREVL RRS  RM  ID R+E+L+GL+ A+LN+D +I IIR +D PK  ++     
Sbjct: 361 FLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAALMYEDWS 420

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC------ 477
             +Q                       L   + E   I  L      +   IA       
Sbjct: 421 RVHQ---------------------DTLARAMDEAAYISPLAGVDVSKLAVIADAEAQAT 459

Query: 478 -EIREVKEIFSKSTDLGRRRTTFCEVSRADKAT--------LQQAMIEKEPITVVISNRG 528
             + E  +  +       R     +V               L++  + KE  T++    G
Sbjct: 460 GVLTESGDTRAVPHSYAGRENGLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAG 519

Query: 529 WIRSLKSHSVDLSAL-----HFKEG-------DSLKIALHAHTTDRILLLSTDGKAYTLP 576
               L +  +  + +       K+        D +K      T        T G+   +P
Sbjct: 520 LEDLLDNEDLQWTTIADQLRATKKQFGKDWVIDGIKRGQRLST------FETAGEVEDVP 573

Query: 577 AGNLLSG-------------RGHGEAIQL--LIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
              ++               R     I L   +           F  ++T +LLV  S G
Sbjct: 574 IEAMIDREPITVVCSQMGWIRAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNG 633

Query: 622 NAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVK--------------------VTGDH 660
             + V  + +      G+   L V    ++++V                      V  D 
Sbjct: 634 RFYTVSAANLPGGRGMGEPLRLMVDLPNEVQIVSLFIHQPGRKLLVASSAGDGFVVPEDE 693

Query: 661 VAVVGENRK-------------------------------LLIFSIDQIPEMSRGKGVRL 689
           V     + K                               +L+F +D++PEM RGKGVRL
Sbjct: 694 VVAQTRSGKQVLNVRGDGVAALVCHPVSGDSVATVGENRKVLVFGLDELPEMGRGKGVRL 753

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
           Q YKDGG+SD   F    GL+W D AGR   R+E DL  W GKR   G + P+GFPR  K
Sbjct: 754 QKYKDGGLSDATTFTRDAGLSWQDPAGR--TRTEADLAEWTGKRASSGRMAPRGFPRDNK 811

Query: 750 F 750
           F
Sbjct: 812 F 812


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/764 (29%), Positives = 376/764 (49%), Gaps = 46/764 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  M +MGL      
Sbjct: 13  ADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGH 72

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 73  VKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG SGIAVGMAT+I 
Sbjct: 132 EARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGASGIAVGMATNIA 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E     + L+D+P  S+  L+ YI GPD P GG+IV   + I ++Y  GRG F+ 
Sbjct: 192 PHNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGGVIV-GLDGIKDAYETGRGAFKT 250

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA+  +E V      IVVT++PY V   ++IEKI E   A R+  +  +++ +       
Sbjct: 251 RAKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISSVQNLTDRVHGLR 310

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  +L+ +L HR +V
Sbjct: 311 LVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKEMLQVFLDHRLDV 369

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RRS FR+   + R+ +++GLL+A L+ID++IAIIR+ D     +  +++ F L+E Q 
Sbjct: 370 TTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARERLMTAFDLSEAQA 429

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL LRLR L K    +++SE D L+A+  ++  +L+  +     +  E+REV +    
Sbjct: 430 TYILELRLRRLTKFSRIELESERDELVAKIAQLREILDDPELLRALVKKELREVSDRLGT 489

Query: 489 STDLGRRRTTFCEVSRADKATLQ-------------QAMIEKEPITVVISNRGWIRSLKS 535
                   +T   V                         I  +P  VV+S+ G +  ++ 
Sbjct: 490 PRRTLLLASTGSPVGAGADDAALAALPSVSRSGKGLDLQIPDDPCVVVLSSSGALARVEG 549

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS------GRGHGEA 589
                        D  +  L +    ++ +++ DG A+ +   +L +      G     A
Sbjct: 550 GDPLEPGPRA-ASDGWRAQLASSVRSQVAVVTQDGIAHRIDVVDLPALPRFDTGLSLAAA 608

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +   + L+ +   V     D T  + + +++G    +    +    R+    + +   ++
Sbjct: 609 MPSELLLHTDSVPVGLLDPDGTDVVAMGTARGTVKRLRPDVLA---REEWEVIALEDGDR 665

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           +    + + D  +  +  + +LL     ++    R   G+       G  ++ + F + E
Sbjct: 666 LVGFDRCSDDADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNAG--AEALGFWVVE 723

Query: 708 G------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                        L  +   G++  +           RGG G  
Sbjct: 724 APIDAVVVTVAAALGALPGTGQTTVKVTPLECYPAKGRGGQGVR 767


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 307/753 (40%), Positives = 481/753 (63%), Gaps = 19/753 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+    L+    ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM  + L   ++FK
Sbjct: 5   KNNITEEQLKNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLTSKSSFK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F  +YPLI+GQGNFGNIDGD+AAA RYTE
Sbjct: 65  KSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++T+V+E +L+ +  + V+FR TY+ E SEP V P+ FPNLLANG+SGIAVGMAT+IP 
Sbjct: 125 TKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++EIC + + L ++ + SI  LL+ + GPDFPTGGI+   ++ ++++Y  GRG F +R
Sbjct: 185 HNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGRGFFELR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++ VE++ +G + + +++IPYQV KS+LIEKIA+LII K+  L++++ DES E++R+V+
Sbjct: 245 AKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDENIRVVI 304

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            PKNR++DP +LM S++  +D+E +F LNMNVL+    P+VM +  IL  +L HR  +L 
Sbjct: 305 RPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKHRYIILE 364

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           ++S F +  I+ R+EILKG LIA+ N++ II IIRN + PK  +V ++  TENQV+AIL+
Sbjct: 365 KKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNPKAELVKKYRFTENQVNAILD 424

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++LRSLRK+EE +IK E   LL +K+ +  LL+S   Q  +I  E+ ++   F  ++  G
Sbjct: 425 MKLRSLRKIEEKEIKEENSKLLNKKKLLMKLLSSKSLQKKEINKEMEDLILQFGNNSAYG 484

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
            R+T   + +R + + L + +   +PIT ++   G++++   +SV      F E + L  
Sbjct: 485 LRKTVIEKFNRIESSELDEELKSTDPITAILLKTGFLKAKIGYSVCKVNADFSENEHLY- 543

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
            ++   +D+ + LS+ GK+YTL   NL+ G   G+       L  N++IV +F+Y +  K
Sbjct: 544 -VNGRKSDKFIFLSSFGKSYTLDGENLVFGSQKGKPFSSYFSLKENEEIVDSFLYKNNEK 602

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENR--- 668
           +L+ SS G  F +    +I+N + GK    +   + +   V++  D   + ++ +N+   
Sbjct: 603 ILLCSSNGYGFFINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLTKNKKEN 662

Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           +  + S+  IP     KGV +  +K   +S      +      +D+      +S N L  
Sbjct: 663 RASVISMKDIPTQE--KGVGIILFKGKKVSLFALSTVSAKFEMLDNYTTPVKKSLN-LKK 719

Query: 729 WLGKRGGVGSL---------VPKGFPRSGKFLS 752
           +L  R   G +         + +G+  + K +S
Sbjct: 720 FLIPRTKNGKIIKYNLFFSSLFRGYENNFKLIS 752


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 219/763 (28%), Positives = 373/763 (48%), Gaps = 53/763 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDVMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQDAYLADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ EA  A + N +IS ++L++YI GPDFPTGGI+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVIEAVKAYMKNDDISTKQLMKYIKGPDFPTGGIVV-NKDELLNIYEAGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE+  G   +V+TEIPY        + +  +  L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVEVEEMKGGKNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    R  D + L   ++  + +E  F +NM        P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKRGADVENLTNMLYKKTRLEDTFGVNMLA-VANGRPETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + E+  R+    ++    R EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELATRKYQNLLKKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTEN 418

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M +    TE Q  AIL +RL  L  LE   +  E +  L    + + +LN
Sbjct: 419 IKFKSSISKKMAAMLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++ ++K+ F+      R+R T  E   A++A  ++  IE++ +  ++  
Sbjct: 479 NYDSMAEVIMADLDKIKKEFA------RKRRTAVE--NAEEAVYEENKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++ ++  + +          K  L    T ++ + +  GK + +   +L  G  R
Sbjct: 531 FGYAKTVDTNIYERNKEA--ADAENKHVLSCMNTGKLCIFTNTGKMHQVKVLDLPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G  I  + + +  Q+ +  ++ D+      +LL  + +G    VE +E     R    
Sbjct: 589 DKGLPIDNVSNYDSTQENI-VYICDAEQMRYARLLFATKQGMIKKVEGNEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGI 697
             K+  E+++  V V      V +  +    L F   ++    +G  GVR     K+  +
Sbjct: 647 ATKLQPEDELISVQVVTDNQQVVLQTKEGYFLRFPAQEVSGKKKGAIGVRGIKLRKNDEL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                F+       I                 + KR G G+  
Sbjct: 707 EHAYLFEEGTEAKVIFGEKEVTLNRLK-----VAKRDGNGTKA 744


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/781 (28%), Positives = 363/781 (46%), Gaps = 87/781 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG+IV  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIV-GRKGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +   
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 LVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L E Q 
Sbjct: 374 IRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ +    +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILASDEALDGVVIDEMDDAVAKYGT 493

Query: 489 STDLGRRRTTFCEVSR-------------------------------------------- 504
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAAATVSSAAADVAAAAKAAK 548

Query: 505 ---ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-----SALHFKEGDSLKIALH 556
               + AT     I+ EP  V++S  G I      +V+      ++    + D +     
Sbjct: 549 KAGDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKDDQIVSMFR 608

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIV 603
             T     L+++ G+        L      G               +    D    + ++
Sbjct: 609 TSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVI 668

Query: 604 TAF---VYDSTCKLL---VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            A      D   +L+   + +  G             T    + + +  ++++    +  
Sbjct: 669 AAIDMPSTDDDGQLVPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDDDEVLAAAEAR 726

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D +  V  +  LL F    +    R   G+      +G  +          +TW    
Sbjct: 727 DEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTWNYEE 786

Query: 716 G 716
           G
Sbjct: 787 G 787


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/759 (31%), Positives = 367/759 (48%), Gaps = 43/759 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V EN+  + +   +   +L YA S I  RA+PD RDG KPV RRI+  MS+MGL      
Sbjct: 9   VAENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQMGLRPEKGH 68

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KS  +VGEV+GKLHPHGD ++YD+LVRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 69  VKSQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYT 127

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  ++  +DED VDF   Y+  + +P V P+ FP LL NG  GIAVGMAT+I 
Sbjct: 128 EARLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIAVGMATNIA 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  A   LIDNPE +   L+ ++ GPD P GGIIV   + I E+Y  GRG F+ 
Sbjct: 188 PHNLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIV-GLDGIREAYETGRGAFKT 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA+  VE V      +V+TE+PY V   R+IEKI E + +K++  + ++ + +       
Sbjct: 247 RAKITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNLTDRHHGVR 306

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P  +M  +F  + +E  F +N   L  G  P  + L  +L+ ++ HR  V
Sbjct: 307 LVVEVKNGFNPQAVMSQLFKHTPLEDNFSINAVALVDG-RPMTLGLKQMLEVYVKHRLSV 365

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR+Q    R+ +++GLL+A ++ID++IAIIR+ D     +  ++  F L+E Q 
Sbjct: 366 IERRSQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMDVFELSEIQA 425

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL+LRLR L K    ++++E   LL++ E +  +L S +     +  E+ EV +  + 
Sbjct: 426 DHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILGSEQALRTVVRDELVEVSKRLAT 485

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS-NRGWIRSLKSHSVDLSALHFKE 547
                       +V  A KA      I   P+ VV++ N G IR   +  ++ +      
Sbjct: 486 PRRTVLLSADPQQVETAGKAAAVPLEIPDAPVQVVLTANGGLIRVDGAEPLEKTESR--- 542

Query: 548 G--DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL------SGRGHGEAIQLLIDLNHN 599
           G  D+ ++A+ A    ++ L+   G  + +   +L       S      AI     L   
Sbjct: 543 GIWDTYRVAISATARSQVGLIDASGMLHRVEVVDLPEVPRSASNPSFAGAISASQLLGTE 602

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFI-----VEESEIIANTRKGKTFLKVSSEEKMKLVV 654
              V     D       V+  G          +              + ++  +++    
Sbjct: 603 VCPVGLIHVDGDDISGFVTKLGQIKRMRPDFAKADSFET--------ILLTDGDEVLFAA 654

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
               +  + +V  + +LL     +I    R   GV      +G       F   EG   +
Sbjct: 655 PCPDEAEIVMVTSDAQLLRTPAAKIRPQGRVAGGVVGMVIGEGARLLEANFVPSEGAQIV 714

Query: 713 DSAGRSYNR--------SENDLLGWLGK-RGGVGSLVPK 742
             A  +             +DL  +  K R   G    +
Sbjct: 715 TVAAAADGLFGEMQSSVKVSDLEIYPVKGRATQGVRCHR 753


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/721 (32%), Positives = 356/721 (49%), Gaps = 40/721 (5%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  V +   +E  +L YA S I  RA+PD RDG KPV RRII+ M++MGL     + K
Sbjct: 17  ERIVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMADMGLRPDRPYVK 76

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VGEV+GKLHPHGD ++YD++VRLAQPF  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 77  SARVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEA 135

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  + QG+DED VDF   Y+ +  +P V P+  PNLL NG +GIAVGMAT++  H
Sbjct: 136 RMAPAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVNGATGIAVGMATNMAPH 195

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+  AA  L+ +P+ ++E L+ ++ GPD PTGG IV   + + ++YR GRG FR RA
Sbjct: 196 NLVEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRGAFRTRA 254

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
              VE V      IVVTE+PY V   ++IEKI E + +K++  + D+ D +       ++
Sbjct: 255 TARVENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGISDVVDLTDRQHGLRLV 314

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                   P+ ++E ++  + +E  F +N   L  G+ P+ + L  +L+ W+ HR EV+ 
Sbjct: 315 IEVKTGFHPEAVLEQLYRHTPLEDSFSVNNVALVDGQ-PRTLGLVDLLRVWVDHRLEVVR 373

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDA 430
           RR+S+R+     R+ +++GLLIA L+IDE+I +IR  D          S F L+E Q + 
Sbjct: 374 RRTSYRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGRLRSVFDLSEPQAEY 433

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L +    +++ E D L  E  ++ ++L          + E+ EV   +    
Sbjct: 434 ILELRLRRLTRFSRIELERERDELTDEIARLQAILADDGLLRTVTSDEMAEVAATYGTP- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQAMI------------EKEPITVVISNRGWIRSLKSHSV 538
               RRT   E +                           P   ++S  G +        
Sbjct: 493 ----RRTVLLEHAGGAGLAGAAGAPTSSKGAAAPLEIPDTPCWALLSATGLLARTGEDVE 548

Query: 539 DLSALHF--KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGE 588
            +          D +  A+       I  L++ G+   L    L S            G 
Sbjct: 549 PVRGDGTVRSRHDVVASAVSTTARADIGALTSAGRVVRLSVLELPSLPPTDGPPSLSGGL 608

Query: 589 AIQLLIDLNHNQDIVTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            +   + L   + +V      D    L + +++G    V   ++ AN R     + +   
Sbjct: 609 PVGEAVTLEKGESVVALVPLGDDAPPLALGTAQGVVKRVAAGDVPAN-RDAWEAISLKDG 667

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +++         D + +V  +  LL F   Q+    R   G+       G  + V+ F +
Sbjct: 668 DQVVGAALARDEDELVLVSSDSSLLHFPGAQVRPQGRSAGGMAGIKLAAG--ARVVAFGV 725

Query: 706 C 706
            
Sbjct: 726 V 726


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 370/758 (48%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   NDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + +    +D++ VDF   ++E + EP V P K PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   A + N +I+ + L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVV-NQDELRKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  +E+   G   +V+TEIPY        + +  +A L+ +K+   + DI ++S+++ 
Sbjct: 244 RGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D D L+  ++  + +E  F +NM  ++ G  P+ + L  +++  +  + 
Sbjct: 304 IRIVLELRRDTDVDNLVNMLYKKTRLEDTFGVNMLAVADG-RPETLSLKQVVEHHVEFQF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           E+  R+    +     + E+ +GL+ A   ID II I                     IR
Sbjct: 363 EIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGETEGIR 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + K      ++   TE Q  AIL +RL  L  LE   +  E +  L    K + LLN+ 
Sbjct: 423 FKSKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIAKYEDLLNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+  VK+ F      GR+R T  E ++  +A  ++  IE+  +  ++   G
Sbjct: 483 DSMAQAIMNELDAVKKEF------GRKRRTALENAQ--EAVFEEKKIEEMEVWFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
           +++++   + + +  +       K       TDRI + +  G+ + +   ++     R  
Sbjct: 535 YVKTIDRQTYERNKENACSES--KYLFSCMNTDRICIFTDAGRMHAVKVLDIPLVKFRDK 592

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  +  L + N  ++ +         K   LL  + K     V   E    T++     K
Sbjct: 593 GVPVDNLSNYNSQEEQILYVAGMEELKHSQLLFATQKAMLKQVSGQEFD-VTKRTIMATK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +K+  V      ++V +       L F   ++PE  +G  GVR      G    + 
Sbjct: 652 LTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPEKKKGAIGVRGMRL--GEQDQLE 709

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              + EG T      +    + N L   L KR   G+ 
Sbjct: 710 HAYLLEGHTEYTIEYKEKKLTLNRL--RLAKRDTKGTK 745


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 218/762 (28%), Positives = 367/762 (48%), Gaps = 53/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDLMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKLTQDAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A  A + N EIS ++L+ Y+ GPDFPTGGI+V +++ + + Y  G G  
Sbjct: 181 IPPHNLGEVVDAVKAYMKNDEISTKQLMRYMKGPDFPTGGIVV-NKDDLPDIYESGAGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +   E++  G   +VVTEIPY        + +  +  L+ +K+   + DI ++S++
Sbjct: 240 KIRGKVETEDMKGGKKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKKGADAENLTNMLYKKTRLEDTFGVNMLAVADG-RPETMGLKQIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + E+  R+    +     + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFELATRKYKNLLAKELDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTEN 418

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M +    TE Q  AIL +RL  L  LE   ++ E +  L      + +LN
Sbjct: 419 IKFKTSISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ +      GR R T  E   A+ A  ++  IE++ +  ++  
Sbjct: 479 NYDSMSEVIMEDLDRIKKEY------GRSRRTAVE--NAEAAVFEENKIEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++ +   + +          +  L    T +I L +  GK + +   +L  G  R
Sbjct: 531 FGYAKTVDTAVYERNKEA--ADAENRYVLSCMNTGKICLFTNTGKMHQIKVLDLPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G+ I  + + +  Q+ +            +LL V+  G    V+ SE     R     
Sbjct: 589 DKGQPIDNVSNYDSTQETIVYLCDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKRT-IAA 647

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGIS 698
            K+  E+++  V  +    ++ +   +   L F   ++ E  +G  GVR     K+  + 
Sbjct: 648 TKLQEEDELISVQVINDSQNIVLQTADGYFLRFPAGEVSEKKKGAIGVRGIRLHKNDEVE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL-GKRGGVGSL 739
               F+              Y   E  L     GKR   G  
Sbjct: 708 HAYLFEEG------TETKVVYKEKEVTLNRLKSGKRDTQGVK 743


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/777 (29%), Positives = 380/777 (48%), Gaps = 47/777 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E    A+ L+DNP  S+  L+ YI GPD P GG+IV   E I 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  +E V      I+VT++PY V   ++IEKI E   A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 MLQVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q + IL LRLR L K    ++++E D LLA+   +  +L   +     + 
Sbjct: 418 LMTAFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITV 522
            E+REV +            +T   V  A                       I  +P  V
Sbjct: 478 KELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLDLQIPDDPCVV 537

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S+ G +  ++              D  ++ L +    ++ +++ DG A+ +   +L +
Sbjct: 538 VLSSTGALARVEGGDPLEPGPRA-ASDGWRVQLPSTARSQVAVVTEDGIAHRIDVVDLPA 596

Query: 583 ------GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                 G     A+   + L+ +   V     + T  + + +++G    +    +    R
Sbjct: 597 LPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMGTTRGTVKRLRPDVLQ---R 653

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                + +   +++    + + +  +  +  + +LL     ++    R   G+       
Sbjct: 654 DEWEVIALEDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNA 713

Query: 695 GGISDVICFKICEG------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           G  ++ + F + E             L  +   G++  +           RGG G  
Sbjct: 714 G--AEALGFWVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPFECYPTKGRGGQGVR 768


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/783 (30%), Positives = 374/783 (47%), Gaps = 63/783 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   L      D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +ALI  PE+S EKLLE + GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVG-SGVRDTYLQGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+PYQ+ K+  IEK+A+ +   +I  + DIRDES
Sbjct: 240 PMRGIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  +   ++  +   + +++ F   +  L  G+ PQ + L  +L  +L
Sbjct: 300 DREGMRVVIELRRDTEASKVLTDLQRRTSLQSNFGAILLALVNGQ-PQQLSLRQLLNHFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            +R   L RR+S  ++  + R+E+++GL+ A   + E+I  I+          S    F 
Sbjct: 359 EYREHTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVIERIQAASDAASARASLQVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E   L+ E+E++  LL+        +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERERLRHLLDDRAALLESMVAELKAL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ +S       RRT          A    A+     +              ++I   G 
Sbjct: 479 KKRYSTP-----RRTRLVAGGDDLVAQRAAAVRPNTELQRQQALEALPGDGRLLIQADGV 533

Query: 530 IRSLKSHSVDLSALHFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           +R +   ++    LH  E   L       ++ L       +L  S  G+   L    A  
Sbjct: 534 VRIVSPQALGR--LHLDEAAPLGEHPSPARLILPVAEKPSLLAFSASGRVAMLRWEFAAQ 591

Query: 580 LLSGRGH-------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
                         G+ I  ++ L              T  L ++SS G    +      
Sbjct: 592 QPGSLEKFLPEGLLGDPIVEVLPLPQ----------KPTGTLGLLSSDGRFKRLPIEAFS 641

Query: 633 ANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVR 688
             + +  T LK+    +++ VV    G  + V     +LL  +++   +P M +   G  
Sbjct: 642 ELSGRAATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRLLRLAVNDDTLPLMGKAAQGPM 701

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
           L     G  S V    +  G   +  +  S  +          +RG +G +  +   R  
Sbjct: 702 LLRLLPGE-SVVGAACVDPGSDVLLVSRHSQLKRLEVEGLRRCERGDLGQIGLRFRQRED 760

Query: 749 KFL 751
           + +
Sbjct: 761 ELV 763



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 524 ISNRGWIRSLKSHSV-DLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S+ G  + L   +  +LS      L  K+G  L+  +       +++ ST G+   L  
Sbjct: 626 LSSDGRFKRLPIEAFSELSGRAATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRLLRLAV 685

Query: 578 GN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            +    L+     G    +L+ L   + +V A   D    +L+VS       +E   +  
Sbjct: 686 NDDTLPLMGKAAQG---PMLLRLLPGESVVGAACVDPGSDVLLVSRHSQLKRLEVEGLRR 742

Query: 634 NTRKGKTFLKVS---SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
             R     + +     E+++  +   +   + +     + L  ++  +
Sbjct: 743 CERGDLGQIGLRFRQREDELVDLQAGSAAVMGLRFSTGRSLRLAVADL 790


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/781 (28%), Positives = 362/781 (46%), Gaps = 87/781 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P GG+IV  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIV-GRKGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +   
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 LVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L E Q 
Sbjct: 374 IRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIAVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ +    +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLKRRIEELERILASDEALDGVVIDEMDDAVAKYGT 493

Query: 489 STDLGRRRTTFCEVSR-------------------------------------------- 504
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAAATVSSAAADVAAAAKAAK 548

Query: 505 ---ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-----SALHFKEGDSLKIALH 556
               + AT     I+ EP  V++S  G I      +V+      ++    + D +     
Sbjct: 549 KAGDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKDDQIVSMFR 608

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIV 603
             T     L+++ G+        L      G               +    D    + ++
Sbjct: 609 TSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVI 668

Query: 604 TAF---VYDSTCKLL---VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656
            A      D   +L+   + +  G             T    + + +  ++++    +  
Sbjct: 669 AAIDMPSTDDGGQLVPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDDDEVLAAAEAR 726

Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             D +  V  +  LL F    +    R   G+      +G             +TW    
Sbjct: 727 DEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTWNYEE 786

Query: 716 G 716
           G
Sbjct: 787 G 787


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/762 (29%), Positives = 367/762 (48%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     
Sbjct: 1   MAEKIIRTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + A+ +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAQEVYLKDLDKTVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A ID+P+IS E+L+EY+ GPDFPTGGI + ++  +   Y  G G  ++
Sbjct: 181 PHNLGEVVDAVRAYIDDPDISTEQLMEYMPGPDFPTGGI-IANKSELPVIYETGAGKIKL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R ++ VE  +       +V+TEIPY       ++ +  IA+L+ +K++  + DI ++S +
Sbjct: 240 RGKFEVELGKRKADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  +  E  F +NM  +  G  P+ + L GIL+ +L  
Sbjct: 300 EGIRIVLELRKDADIEKIKNILYKKTKFEDTFGVNMLAI-AGGRPETLSLKGILRNFLDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           + E   R+ +  +Q    + E+ +GL+ A   ID IIAI+R     K             
Sbjct: 359 QYENTERKYNVLLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLTNGDVSN 418

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        +   TE Q  AIL +RL  L  LE   ++ E    L +      +L 
Sbjct: 419 IRFKVQGFEEDAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIAGYKKILG 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  ++  +KE FS        R T  E     +A   ++ ++ + +  V+  
Sbjct: 479 SRGEMNRVIKDDLAAIKEEFSVP------RRTLIE--DGPEAVYDESAVQVQEVVFVLDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ + L   + + +             +    TD+I L +  G  Y +   ++ +G  R
Sbjct: 531 FGYCKLLDKSTYERNQETV--DTEQVHVVRCLNTDKICLFAASGNLYQIKVMDVPAGKLR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I+ L   +  +D +         K   L+  +       V   E   N R     
Sbjct: 589 DKGVPIENLSKYDGAKDSIVYLTCAQDLKGATLVFATKMAMVKQVPAEEFETNNR-MVAA 647

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGIS 698
            K+   +++  ++ V G + V +   +   L F +++I  + +  +GVR     K+  + 
Sbjct: 648 TKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVLKKASRGVRGIKLAKNEELE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +           ID  G+  + +       L KR G GS V
Sbjct: 708 KLYLIGDNP---VIDYKGKEVHMNRL----KLAKRDGKGSKV 742


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/777 (29%), Positives = 380/777 (48%), Gaps = 47/777 (6%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+DED VDF   Y+ +  +P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E    A+ L+DNP  S+  L+ YI GPD P GG+IV   E I 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  +E V      I+VT++PY V   ++IEKI E   A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPRTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ +L HR +V  RRS FR++  + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 MLQVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L+E Q + IL LRLR L K    ++++E D LLA+   +  +L   +     + 
Sbjct: 418 LMTAFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITV 522
            E+REV +            +T   V  A                    +  I  +P  V
Sbjct: 478 KELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLELQIPDDPCVV 537

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S+ G +  ++              D  ++ L +    ++ +++ DG A+ +   +L +
Sbjct: 538 VLSSSGALARVEGGDPLEPGPRA-ASDGWRVQLPSTARSQVAVVTEDGIAHRIDVVDLPA 596

Query: 583 ------GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                 G     A+   + L+ +   V     + T  + + +++G    +    +    R
Sbjct: 597 LPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMGTARGTVKRLRPDVLQ---R 653

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                + +   +++    + + +  +  +  + +LL     ++    R   G+       
Sbjct: 654 DEWEVITLEDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNP 713

Query: 695 GGISDVICFKICEG------------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           G   + + F + E             L  +   G++  +           RGG G  
Sbjct: 714 GV--EALGFWVVEAPIDAVVVTVAAALGALPGTGQTTVKVTPFECYPTKGRGGQGVR 768


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 314/628 (50%), Gaps = 37/628 (5%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT IP HN+ E+ EA L LI
Sbjct: 1   DKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLI 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D PE + ++L++++ GPDFPTGG I   R  I+++Y  GRG  R+RA+  +E   +    
Sbjct: 61  DTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGRVRIRAKHHIETKAK-KEI 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+ E+PYQV K+RLIE IA L   K+I  + ++RDES  +   V+    +    ++++ 
Sbjct: 119 IVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLN 178

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
           +++  + MET F + + +    + P+V  L  IL  +L+HR+ V+ RR+ F ++    R 
Sbjct: 179 NLYKSTPMETTFGI-ILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARA 237

Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            IL+GL IA  NIDE++ IIR   N+ + K  + +RF L+  Q  AIL++RL  L  L+ 
Sbjct: 238 HILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSAIQSQAILDMRLGRLTGLQR 297

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++++E   L+    +++++L S ++    I  E+ E+KE FS             E+  
Sbjct: 298 DKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEKFSNDRK--------TEIED 349

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
           +      + +I  EP+ V I++ G+++          K       A+   + D ++    
Sbjct: 350 SYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFV 409

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           ++T D ++ ++  G+ Y L    +  G     G+A+  LI+L  ++ I+       +D +
Sbjct: 410 SNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPDEKIMEIIPTPDFDES 469

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669
             L+  +  G       +E       G   + +   +++    +  V   ++ +     +
Sbjct: 470 KSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQ 529

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSAGRSYNRSEN 724
            + F +++  +  R  +GVR   +K        +DVI  +  E LT    + +   +   
Sbjct: 530 CIRFELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSEDQEILTV---SEKGIGKRTT 586

Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                L  R G G +  K   ++G  + 
Sbjct: 587 VEEYRLTNRAGSGVISMKLSTKTGNVIG 614



 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 66/206 (32%), Gaps = 19/206 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIAL 555
                   +     ++    V  +  G I+    +         + A+   + D +  A 
Sbjct: 453 PDEKIMEIIPTPDFDESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAK 512

Query: 556 HAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHNQDIVTAFVYDS 610
            A   T  I++ ++ G+        L   R  G + + +      ++ +  +    +   
Sbjct: 513 IADVETQYIMIFTSLGQCIR---FELEKTRDQGRSTRGVRGIKFKIDTDFVVDADVISSE 569

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVTGDHVAVVGE 666
             ++L VS KG        E     R G   + +         +  V+      + ++  
Sbjct: 570 DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLSTKTGNVIGEVLVDDTQDLMLLTS 629

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQS 691
             K++   ++ I +  R   GV + +
Sbjct: 630 IGKMIRVDMNTIRKAGRNTSGVIIVN 655


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/770 (29%), Positives = 371/770 (48%), Gaps = 47/770 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + E  V  V +   +E  +L YA+S I  RA+PD RDG KPV RRI++ M +MGL     
Sbjct: 1   MTEGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERG 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             KS+RIVG+V+GKLHPHGD ++YD+LVRL+Q F+ R PL+ G GNFG++D D  AA RY
Sbjct: 61  HVKSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRY 119

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T  +  ++ G+DED VDF   Y+   ++P V PS FPNLL NGTSGIAVGMAT++
Sbjct: 120 TEARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNM 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+  A   LI NPE  + +L+ +I GPD PTGG  +   + + E+Y  GRG FR
Sbjct: 180 APHNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGG-RIIGLDGVREAYETGRGTFR 238

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            RA   +E +      IVVTE+PY V   +++ K+ + + AK++  +  I D S   +  
Sbjct: 239 TRATVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGM 298

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       +P+ ++  ++  + +E  F +N   L  G+ P+ + L  +L  +LAHR +
Sbjct: 299 RLVIGIKNGFNPEAVLAELYRQTPLEESFSMNNVCLVDGQ-PRTLGLRELLTVYLAHRID 357

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F+++    R+ +++GLLIA L+IDE+I +IR+ D     +  ++  F L+E Q
Sbjct: 358 VIRRRTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMDVFELSELQ 417

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+L+LR L K    ++++E D L  +   ++ LL    +    +A E+    E   
Sbjct: 418 ATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLLADEAKLRELVATELEATAEAIG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
                     +  E+S   K       I   P  V++S  G I      S          
Sbjct: 478 SPRRTVLIEGSMKELSAKGKKAQADLKIADAPCRVLLSTSGRIARTADASPLQRVGKRSS 537

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--------GHGEAIQLLIDLNHN 599
            D+L+  + + T  ++  +++ G+ + +   +L +            G  I   + L  N
Sbjct: 538 HDALRSEIVSTTQGKVGAVTSTGRLHMVDVVDLPALPPAATRPNVAGGVKIADYVTLEKN 597

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKMKLVVK--- 655
           + ++     D   + ++ ++ G    V    + A   K +   + +  ++ +  V +   
Sbjct: 598 ETVLGLI--DLDREFVLGTAGGVVKRVS---VAARPNKSEWEAITLKGKDSVIGVAQPKD 652

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF------KICEG 708
           +       V  N +LL F    +        GV          +              EG
Sbjct: 653 IDESLAVFVTSNAQLLAFDASGLRAQGWNASGVAGMKVAADARALFFGMTPKAAKTDEEG 712

Query: 709 ----------LTWIDSAGRSYN-----RSENDLLGWLGK-RGGVGSLVPK 742
                     +  + S    Y         +D   +  K R   G    K
Sbjct: 713 DADTNIGTFAVVTVASGENFYGAPSSSIKVSDFSEYPTKGRATSGVRAHK 762


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/763 (29%), Positives = 386/763 (50%), Gaps = 53/763 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQLIRTEYSEVMKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKSARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLARLTQEAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +A  A + N  I+ ++L++Y+ GPDFPTG I+V +++ ++  Y  G G  
Sbjct: 181 IPTHNLGEVVDAVKAYMKNNGITTKQLMKYVKGPDFPTGAIVV-NKDDLLSVYETGSGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VEE   G   +V++EIPY        + +  +A L+  K+   + DI ++S++
Sbjct: 240 KLRGKVEVEEGKGGKKKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ M L  I++  +  
Sbjct: 300 EGIRIVLELKKDTDVENLKNMLYKKTRLEDTFGVNMLAVADGK-PETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + E+  R+    +     + EI +GL+ A   ID II I+R     K V           
Sbjct: 359 QFELATRKYKNLLGKELDKKEIQEGLIKACDVIDLIIEILRGSKSIKDVKACLTNGVTDN 418

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M S    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN
Sbjct: 419 ISFKSNISKKMASMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  E+   K+ +      GR+R T  E   A++A  ++  +E++ + V++  
Sbjct: 479 NYDSMAEVIMEELDYYKKTY------GRKRRTVIE--NAEEAVYEEKKVEEQDVVVLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ RS+ + + D +          K  +    T +I + +  GK + +   ++  G  R
Sbjct: 531 FGYTRSIDTATYDRNKES--ADSENKHIIFCKNTGKICMFTNTGKMHQVKVLDIPFGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G  +  L + +  ++ +  ++ D       K+L  +  G    V+ +E +  +++  T
Sbjct: 589 DKGTPVDNLSNYDSAEENI-IYICDEEQFRMGKMLFATKYGMIKKVDGAEFV-VSKRTIT 646

Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGI 697
             K+  E+++  +  V  +  + +       L F  +++ E  +G  GVR     K   +
Sbjct: 647 ATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEKKKGAIGVRGIKLQKTDIL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +V  F   E  T I    R    + N L   L KR G+G+  
Sbjct: 707 ENVYLF---EEGTEIKVPYREKEVTLNRLK--LAKRDGMGTKT 744


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/758 (29%), Positives = 358/758 (47%), Gaps = 52/758 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     +KS
Sbjct: 1   KILKTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYTEAR
Sbjct: 61  ARIVGDTMGKYHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEAR 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + + AE +     +  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP HN
Sbjct: 121 LEKFAEEVYLKDLDKTVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 180

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A  A ID+P+IS EKL+E + GPDFPTGGI + ++  +   Y  G G  ++R +
Sbjct: 181 LGEVVDAVDAYIDDPDISTEKLMELMPGPDFPTGGI-IANKSDLPAIYETGSGKIKLRGK 239

Query: 256 WCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             VE  +       +V+TEIPY       ++ +  +A+L+ +K++  + DI ++S ++  
Sbjct: 240 MEVELGKRKADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEGI 299

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D + +   ++  + +E  F +NM  +  G  P+ + L GILK +L  + +
Sbjct: 300 RIVLELRKDADIEKIRNILYKKTKLEDTFGVNMLAI-AGGRPETLSLRGILKNFLDFQYQ 358

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------------- 414
              ++    +Q    R E+ +GL+ A   ID IIA++R     K                
Sbjct: 359 NTEKKYRVLLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLTTGDVSNIKF 418

Query: 415 -----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                     +   TE Q  AIL +RL  L  LE   ++ E    L +  + + +L S  
Sbjct: 419 KTPGFEADAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIARYEKILGSRA 478

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I  ++  +K+ F+        R T  E     +A   +  ++ + +  V+   G+
Sbjct: 479 TMNQVIKDDLEAIKKEFALP------RKTQIE--DGPEAVYDETAVQVQEVVFVMDRFGY 530

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHG 587
            + L   + + +             +    TD+ILL +  G  + L A ++ +G  R  G
Sbjct: 531 CKLLDKATYERNRETV--DTEQVHVVRCLNTDKILLFTDTGNLHQLKAMDVPAGKLRDKG 588

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L   +  ++ +         K   L+  +       V   E   N R      K+
Sbjct: 589 TPIDNLSKFDGGKETIVYLADSRELKGKVLVFATRTAMVKQVPAEEFETNNRT-VAATKL 647

Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              + +  V  V G   V +   N   L F +++I  M +  +GVR      G   + + 
Sbjct: 648 QDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMKKNARGVRGIKLARGEELEALY 707

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               + +          NR +      L KR G GS V
Sbjct: 708 LLGEDPVVDYKGKEVHMNRLK------LAKRDGKGSKV 739


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/758 (29%), Positives = 381/758 (50%), Gaps = 50/758 (6%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G  F   ++K
Sbjct: 2   EEIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           +ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTEA
Sbjct: 62  AARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 121

Query: 135 RMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+ +  + +  + +D++ V+F   ++E + EP V P + PN+L NG+ GIAVGMATSIP 
Sbjct: 122 RLQKFTQEVYLKDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPP 181

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +AA A I N +++  +L++YI GPDFPTGGI+V +++ + + Y  G G  R+R
Sbjct: 182 HNLGEVIDAAKAYIGNKDLTDRQLMKYIKGPDFPTGGIVV-NKDDLPQIYESGSGKIRIR 240

Query: 254 ARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +  VE+   G   +V+TEIPY        + +  +A L+  ++ P + DI + S+++  
Sbjct: 241 GKVEVEKGKNGRQSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    +  D + L   ++  + +E  F +NM     G  P+ + L  +L  +   + E
Sbjct: 301 RIVLELKKGADVERLKNLLYKKTRLEDTFGVNMLA-VAGGRPETLSLKKVLDNFTDFQFE 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------------- 414
           +  R+    +Q    + E+ +GL+ A   ID II I+R     K                
Sbjct: 360 LATRKYQQMLQKELEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTMGVTDGINF 419

Query: 415 -----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                         T+ Q  AIL +RL  L  LE   +  E +  +A+  + +++LN   
Sbjct: 420 KHKSSEKQAKELCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYENILNDYD 479

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I  ++ ++K+ ++        R T  E   A+   L +   E+  +  ++   G+
Sbjct: 480 TMAGVIVDDLEQIKKNYATP------RKTVIE--NAEAIVLAEPEEEETELVFLMDRFGY 531

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
           +R++ +   D +          K   H  +TDR+ + + +G  +T+   ++     R  G
Sbjct: 532 VRTVDTSVYDRNKEA--ADAENKYIFHCMSTDRVCVYTDNGMMHTIKVKDIPFTKFRDKG 589

Query: 588 EAIQLLIDLNHN-QDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L + + + + +V A         KL+ V++ GN  IV  SE   N RK  +  K+
Sbjct: 590 TPIDNLCNYSADNERVVFAGPMAEVKQKKLVFVTASGNVKIVSGSEFDVN-RKVISATKL 648

Query: 645 SSE-EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           + + + + LV     GD + +   +   L F + +IPE  +   GVR  S   G   +  
Sbjct: 649 ADDADSVVLVGYADAGDFLVIQSRDGYFLRFPMTEIPEKKKTAVGVRGISL--GKDDEAE 706

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              +  G   ++   R    S N L   LGKR G G+ 
Sbjct: 707 AAYLVAGGNEMEIEYRGKKVSLNKL--RLGKRDGKGTK 742


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/762 (29%), Positives = 371/762 (48%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     
Sbjct: 1   MAEKIVKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A +A IDNP+IS  +L+EY+ GPDFPTGGI + ++  + E Y  G G  ++
Sbjct: 181 PHNLGEVIDAVMAYIDNPDISTRELMEYMPGPDFPTGGI-IANKSGLAEIYETGSGKIKL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +  +E  +       +V+TEIPY       ++ +  +AEL+ +K++  + DI ++S +
Sbjct: 240 RGKIDIELGKRKADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    +  D + +   ++  + +E  + +NM  +  G  P+ + L GILK +L  
Sbjct: 300 DGIRIVLELKKDADVEKIRNILYKKTKLEDTYGVNMLAI-AGGRPETLNLKGILKNYLDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           +     R+    ++    + EI +GL+ A   ID IIA++R     K       +     
Sbjct: 359 QYHNATRKYQALLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLMTGDTSN 418

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++ E    +A+  +   +L 
Sbjct: 419 IKFRVSGFAEDAKNLHFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEYRHILE 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S       I  ++  +KE F+        R T  E     +A   +  +    +  V+  
Sbjct: 479 SRSNMDVVIKKDLAAIKEEFATP------RRTLIE--DGKEAVYDETAVAVSEVVFVMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ + L   + D +    +  +     +    TD+I + +  G  + + A ++  G  R
Sbjct: 531 FGYCKLLDKSTYDRNRETIETEN--VHVVSCFNTDKICMFTNTGNLHQVKAADIPYGKLR 588

Query: 585 GHGEAIQLLIDLN-HNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  L   +   ++I+     +S    + L  + +     V   E   N R     
Sbjct: 589 DKGTPIDNLSKYDGTKEEIIYLCSAESMKGSRFLFATRQALVKRVPGEEFETNNRT-VAA 647

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            K+   + +  ++ +  +  V +   N   L F++++IPEM +  +GVR      G   +
Sbjct: 648 TKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMKKNSRGVRGIKLAQGEELE 707

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSLV 740
            +     + +         Y + E  L    +GKR G GS V
Sbjct: 708 TVYLLGEDPVV-------EYKKKEVHLNRLKIGKRDGKGSKV 742


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/768 (31%), Positives = 396/768 (51%), Gaps = 50/768 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S  KLLE I GPDFPTGG ++ S   + ++Y +GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLS-SGLRDTYLVGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  ++  +   + +++ F   +  L  G+ P+ + L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQ-PRQLSLRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R   L RR+S  ++  + R+E++ GL+ A  N+  +I +I+            + R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ EL+ L AE+E++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELEELQAERERLRLLLDNRDQLLDAMVQELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ FS       RRT   E   A  A    +      +              ++I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALEALPADARLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           ++ +    +    +H  E    GD     ++ L    + R+L +S  G+   +    AG 
Sbjct: 534 VKVMSPPVLGR--MHLSEPCAVGDHPSPAQVILPIEPSPRLLGVSASGRVALVRWEFAGQ 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKG 638
                   + +   +D +    I+   V D T   L ++SS G    +  ++++  + + 
Sbjct: 592 QPG--SLEKFLPSGLDGDPLIAILELPVGDGTEFSLGLLSSDGRFKRLPLADVLDLSGRA 649

Query: 639 KTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQSYK 693
            + +K+     +   V+      + +V    +LL   ++   +P+M R  +G + ++   
Sbjct: 650 TSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPVNDSVLPKMGRLAQGPMTMRLLP 709

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSLV 740
              +   +   + E    +    R    +  DL      +RG +G + 
Sbjct: 710 GEELVGSLSIDVAETDPTLLLVSRKGQMTRIDLTPLRRCQRGDLGIMA 757



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 524 ISNRGWIRSLKSHSV-DLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S+ G  + L    V DLS      +  KEG SL  A+       ++L+S+ G+   LP 
Sbjct: 628 LSSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPV 687

Query: 578 GN--LL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
            +  L        G     L+        ++  V ++   LL+VS KG    ++ + +  
Sbjct: 688 NDSVLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAETDPTLLLVSRKGQMTRIDLTPLRR 747

Query: 634 NTRKGKTFLK-VSSEEKMKLVVKVTGDHVA-VVGENRK 669
             R     +  V S ++  +    +GD +A +V + ++
Sbjct: 748 CQRGDLGIMAVVLSADEDSVAGLCSGDSLAGIVTDQKR 785


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/763 (30%), Positives = 391/763 (51%), Gaps = 55/763 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EPVV P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+HN+ E+ +   A + N EI+  +L++YI GPDFPTGGI+V +++ + E Y  G G  
Sbjct: 181 IPTHNLGEVVDGVKAYMKNEEITTRQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGTGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE++  G   +V+TEIPY        + +  +  L+  K+   + DI ++S++
Sbjct: 240 KIRGKVEVEDMKGGKKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+ M L  I++  +  
Sbjct: 300 EGIRIVIDLKKGADVENLTNMLYKKTRLEDTFGVNMLAVADG-RPETMGLKRIIEAHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           + ++  R+    ++    + EI +GL+ A   ID II I+R     K             
Sbjct: 359 QFDMATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETEN 418

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M      TE Q  AIL +RL  L  LE   ++ E +  LA+ EK + +LN
Sbjct: 419 IKFKSSISKKMAGMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++  +K+ F+      R+R T  E   A++A  ++  +E++ +  ++  
Sbjct: 479 NYDSMAAVIMEDLDRIKKEFA------RKRRTVVE--NAEEAVFEEKKVEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++   + + +       +  K  LH   T +I + + DGK + +   ++  G  R
Sbjct: 531 FGYAKTVDVSTYERNKEA--ADNENKYILHCMNTGKICIFTKDGKMHQVKVMDIPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G+ I  + + +  Q+ +  ++ DS      KLL  + +G    VE +E    T++  T
Sbjct: 589 DKGQPIDNISNYDSTQEEI-VYICDSEQMRYAKLLFATKQGMIKKVEGTEFQ-VTKRTIT 646

Query: 641 FLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGI 697
             K+  E+++  + V     H+ +   +   L F   ++ E  +G  GVR     KD  +
Sbjct: 647 ATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEVTEKKKGAIGVRGIRLKKDDAL 706

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSL 739
           +DV  F+             SY+  E  L    L KR G G+ 
Sbjct: 707 TDVYLFEEG------TECKISYHEKEVTLNRLKLAKRDGTGTK 743


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/761 (27%), Positives = 372/761 (48%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 5   SESQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 64

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+YD+L  +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 65  RKCARIVGDTMGKYHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRYT 124

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  + +    +D++ +DF   ++E + EPVV P + PNLL NG  GIAVGMATSI
Sbjct: 125 EARLTKFTQEVCLSDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATSI 184

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +   A + N  ++  +L++YI GPDFPTGGI+V +++ ++  Y  G+G  +
Sbjct: 185 PTHNLCEVIDGVKAYMKNDGVTTRQLMKYIKGPDFPTGGIVV-NKDDLLNIYETGQGKIK 243

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE++  G   +V+TEIPY        + +  +  L+  K+   + DI ++S+++
Sbjct: 244 LRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 303

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  +
Sbjct: 304 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANG-RPETLGLKQIIEHHVDFQ 362

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------ 416
            E+  R+ +  ++    + E+ +GL+ A   ID II I+R     K              
Sbjct: 363 FELATRKYTTLLEREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTENI 422

Query: 417 ---------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                    M +    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN+
Sbjct: 423 RFKFSISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIARYEDILNN 482

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   K+ F      GR+R T  E   A++A  ++  +E++ +  ++   
Sbjct: 483 YDSMAEVIMEELDSYKKEF------GRKRRTVVE--NAEEAVFEEKKVEEQEVVFLMDRF 534

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ +++     + +          K  +H   T ++ + +  GK + +   +L  G  R 
Sbjct: 535 GYAKTVDMAVYERNKEA--ADSENKYIVHCMNTGKLCIFTDTGKMHQVKVLDLPYGKFRE 592

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
            G  I  + +   +++ +   + D+      KLL  +++G    V+  E     R     
Sbjct: 593 KGTPIDNVSNYTSSEEEI-VMICDAEQMRFAKLLFATAQGMIKRVDGKEFQVAKRT-IVA 650

Query: 642 LKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K+  ++++  V  V    ++ +   N   L F    +PE  +   GVR    +     +
Sbjct: 651 TKLQEDDRLVSVKVVNETQNLVLQTRNGYFLRFPAADVPEKKKAAVGVRGIRLQKKDELE 710

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     T +    ++   +         KR GVG+  
Sbjct: 711 HTYLFEEGTETKVTYGEKTVTLNRL----KAAKRDGVGNKT 747


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/587 (32%), Positives = 329/587 (56%), Gaps = 26/587 (4%)

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NGT+GIAVGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +++ Y  GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P+
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
           + D+RDES  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ +   PQ+ 
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLK 175

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK 
Sbjct: 176 NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA 235

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +
Sbjct: 236 ELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLV 295

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+    E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K 
Sbjct: 296 RAELIADAETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKG 349

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   + 
Sbjct: 350 HDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQ 409

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                      + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   
Sbjct: 410 PPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRP 469

Query: 656 VTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKI 705
           V     + +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I
Sbjct: 470 VPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--I 527

Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +G T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 528 GQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 574


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/556 (39%), Positives = 325/556 (58%), Gaps = 48/556 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +E
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQE 537

Query: 519 PITVVISNRGWIRSLK 534
            + V +S++G+++   
Sbjct: 538 DVVVTLSHQGYVKYQP 553


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/740 (30%), Positives = 397/740 (53%), Gaps = 31/740 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   FKKS
Sbjct: 6   KIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPFKKS 65

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR
Sbjct: 66  ARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEAR 125

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T+++ L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN
Sbjct: 126 LTKISNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNMPPHN 185

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +A + +I NP I+I+++L+ + GPDFPTG + +++++ I E++  G+G   + ++
Sbjct: 186 LSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAV-IQNKQGIREAFLTGKGKVIISSK 244

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           W  E        IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++  
Sbjct: 245 WHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIE 299

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            N   + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R
Sbjct: 300 LNEKANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKR 358

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432
           + F +   + R+EI+ GL+     +DEII +IR  +        +V  F  T NQ  AI+
Sbjct: 359 TQFNLNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLVITFKFTTNQATAIV 418

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++RL  L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      
Sbjct: 419 DMRLYRLTSTDVNKLLLEKTELIEKIKKYQEILNNSLVLDNEIISRLEEVKKQF------ 472

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGD 549
           G +R +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D
Sbjct: 473 GIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPND 532

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV 607
                      D ++L+S     Y++P   + S   +  G  I  +     N+ I+ A V
Sbjct: 533 MWISQGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQPNETIINALV 592

Query: 608 YDS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--H 660
                  T  LL+VS  G     + S++      K    +K+S ++ +     V+    +
Sbjct: 593 IKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSY 652

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
             +V +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +    +     
Sbjct: 653 CCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDYIISALSLQNNKDVLIFTNKNNYK 712

Query: 720 NRSENDLLGWLGKRGGVGSL 739
              +N +  ++  R   G  
Sbjct: 713 RLDQNLIPIYI--RPKKGIR 730



 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I   +NS +         + +  +I    T +  +     ++S  D       +  K   
Sbjct: 593 IKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSY 652

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             +++  G+        I    + S  + A + K+ D +  AL       +L+ +     
Sbjct: 653 CCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKD-DYIISALSLQNNKDVLIFTNKNNY 711

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
             L    +       + I++L++   N + ++  F  +    + ++ +      +  S++
Sbjct: 712 KRLDQNLIPIYIRPKKGIRILVEKKKNKEQVIFGFAINDQMSISILDTNDQITDINVSDL 771


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 249/785 (31%), Positives = 399/785 (50%), Gaps = 64/785 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ +++ +   + +++ F   +  L  G+  Q+     +   +L
Sbjct: 300 DREGMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L AE++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQRLKLLLDNRDQLLDAMVTELKAL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ FS       RRT   E   A  A    +      +              V+I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALAALPGDGRVLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTL------- 575
           ++ +    +    LH  +    GD+    ++ L      R+L +S  G+   +       
Sbjct: 534 VKIVTPQVLGR--LHLNDPCPIGDAPSPARVILPIEPPPRLLAVSARGRIAQVRWEFAGQ 591

Query: 576 ---PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              P    L     G+ I  L+ L   Q+I           L ++SS G    +  SEI+
Sbjct: 592 QPGPIDRFLPTGLDGDPIVSLLSLPS-QNI-------DNLSLGLLSSDGRFKRLPLSEIV 643

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL--LIFSIDQIPEMSR-GKG-V 687
             + +  + LK+    ++   V       +A++ +  +L  L  + D +P M R  +G +
Sbjct: 644 DLSGRATSVLKLKEGVELNSAVICRDQGTLALISDIGRLLRLRVTEDSLPLMGRLAQGPM 703

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            ++      I   +C    E    +    +      +       +RG +GS+  +    S
Sbjct: 704 TMRLLPGEHIVGAVC---TEQTPLMLITRQGMIGRIDYSGLRYNQRGDLGSMALQIDAES 760

Query: 748 GKFLS 752
            + + 
Sbjct: 761 DRLVG 765


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/778 (29%), Positives = 380/778 (48%), Gaps = 44/778 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   +        +EN+  + +   +   +L YA+S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MAKKDQVVDVPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF  R PL+ G GNFG+
Sbjct: 61  MDQMGLRPDRGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEARM   A  ++ G+ ED VDF   Y+ + ++P V P+ FP LL NG 
Sbjct: 121 LD-DGPAAARYTEARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E    A+ L+D+P+ ++  L+ ++ GPD P GG+IV   E + 
Sbjct: 180 SGIAVGMATNIAPHNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIV-GLEGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+Y  GRG F+ RA+  VE V      ++VT++PY V   ++IEKI E + A R+  +  
Sbjct: 239 EAYETGRGAFKTRAKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISS 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++       +P+ +++ ++  + +E  F +N   L  G  PQVM L  
Sbjct: 299 VQNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALV-GGQPQVMGLKQ 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           IL+ ++ HR +V  RRS FR+   + R+ +++GLLIA L+ID++IAIIR+ D     +  
Sbjct: 358 ILRVFVDHRLDVTTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARER 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F L++ Q D IL LRLR L K    ++++E D L A   ++  +L S +     + 
Sbjct: 418 LMTAFDLSQAQADYILELRLRRLTKFSRIELEAERDELAARIAELREVLESPELLRALVK 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-------------QQAMIEKEPITVV 523
            E+ EV E            ++   V     A+               +  I  +P  VV
Sbjct: 478 RELAEVSERLGTPRRTVLLASSGAPVVGGAGASSLAALPSVPRSGKGLELQIPDDPCQVV 537

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +S  G +   +   VD      +   D  +  L +    ++ +++ DG A+ +   +L +
Sbjct: 538 LSATGAL--ARVEGVDPLEPGPRAAFDGWRAQLPSSVRSQVAVVTEDGVAHRIDVVDLPA 595

Query: 583 --GRGHGEAIQLLID----LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
                 G ++   +     L+ +   V     D +    + +++G    +    +    R
Sbjct: 596 LPRFDTGMSLAGAVPASELLHSDSRPVGLLDPDGSAVSAMGTARGTVKRLRPDVLQ---R 652

Query: 637 KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
                + +   +++        +  V  +  + +LL    ++I    R   GV       
Sbjct: 653 DEWEVIALDPGDRLIGFAPCPDEADVVFISGDAQLLRTPAERIRPQGRTAGGVAGMRLSP 712

Query: 695 GGI----------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G            ++ +   +      +   G++  +           RGG G    +
Sbjct: 713 GVEAIGFWVVDAPAESVVVTVAAAEGALPGTGQTTVKVTPFDAYPSKGRGGQGVRAQR 770


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/785 (31%), Positives = 397/785 (50%), Gaps = 64/785 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   +L+ + ED VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  PE+S EKLLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLIS-SGLRDTYLHGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP  +++ +   + +++ F   +  L  G+  Q+     +   +L
Sbjct: 300 DREGMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
             R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+  +     +  ++ R  
Sbjct: 359 DFRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ ELD L A+++++  LL++  Q  + +  E++ +
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQRLKLLLDNRDQLLDAMVTELKGL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ FS       RRT   E   A  A    +      +              V+I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALMAERAASQRPNTELLRQQALAALPGDGRVLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTL------- 575
           ++      +    LH  +    GD+    ++ L      R+L +S  G+   +       
Sbjct: 534 VKIFTPQVLGR--LHLNDPCPVGDAPSPARVILPIEPPPRLLAVSAGGRIAQVRWEFAGQ 591

Query: 576 ---PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              P    L     G+ I  L+ L   Q+I           L ++SS G    +  SE++
Sbjct: 592 QPGPIDRFLPTGLDGDPIVSLLSLPS-QNI-------DELSLGLLSSDGRFKRLPVSEVV 643

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL--LIFSIDQIPEMSR-GKG-V 687
             + +  + LK+    ++   V       + ++ +  +L  L  + + +P M R  +G +
Sbjct: 644 DLSGRATSVLKLKEGVELNNAVICRNQGTLVLISDIGRLLRLRINEESLPLMGRLAQGPM 703

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            ++      I   +C    E    +  + R      +       +RG +GS+  +    S
Sbjct: 704 TMRLLPGEQIVGAVC---TEQAPLMLFSQRGMIGRIDCSGMRYNQRGDLGSMAVQVDAES 760

Query: 748 GKFLS 752
            + + 
Sbjct: 761 DRLVG 765


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/735 (30%), Positives = 399/735 (54%), Gaps = 31/735 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+VG
Sbjct: 11  PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVG 70

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T+++
Sbjct: 71  EVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKIS 130

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI 
Sbjct: 131 NLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEII 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++++I NP I+I+++L+ + GPDFPTG I +++++ I E++  G+G   + ++W  E 
Sbjct: 191 DASISIIKNPNITIDQILKIVKGPDFPTGAI-IQNKQGIREAFLTGKGKVIISSKWHQE- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IVV EIPY+V K  L++KI ++I       +++IRDE+      ++   N   
Sbjct: 249 ----KNNIVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKA 304

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F +
Sbjct: 305 NLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNL 363

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R+EI+ GL+ A   +DE+I +IR  +        +V  F+ T NQ  AI+++RL 
Sbjct: 364 NKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRLY 423

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      G +R 
Sbjct: 424 RLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKRK 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGDSLKIA 554
           +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D     
Sbjct: 478 SQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWISQ 537

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
                 D ++L+S     Y++P   +     +  G  I  +     N+ I+ AF+     
Sbjct: 538 GVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEFI 597

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
             T  LL+VS  G     + S++      K    +K+S ++ +     ++    +  ++ 
Sbjct: 598 NSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIIT 657

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +N   + ++I+ IP  S   KGV+  + KD  I   +     + +    +        +N
Sbjct: 658 KNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLDNNKDVLIFTNKNNYKRLDQN 717

Query: 725 DLLGWLGKRGGVGSL 739
            +  ++  R   G  
Sbjct: 718 LIPIYI--RPKKGIR 730


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 217/758 (28%), Positives = 368/758 (48%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 4   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L  +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 124 ARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 183

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI V +++ ++  Y  G G  ++
Sbjct: 184 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGI-VANKDELLAVYSTGMGKIKI 242

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY        + +  I  L+ AK+   + DI ++S+++ 
Sbjct: 243 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKEG 302

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + 
Sbjct: 303 IRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQY 361

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 362 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 421

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 422 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSR 481

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K       R T  +    ++A +++  IE+  +  ++   G
Sbjct: 482 AAMAKVIIKELESFKKEYAKP------RKTVID--NLEEAVVEEKKIEEMDVVFLMDRFG 533

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           + +++   + + +       +  +  L    TD+I + +  G+ + L   +L  G  R  
Sbjct: 534 YAKTVDVATYERNKEAANTEN--RYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 591

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 592 GTPIDNLSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 650

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +  +  + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 651 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 710

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+  G+    +          R   G+ 
Sbjct: 711 YLLNAEDVVNIEVKGKEVALNRL----RTAGRDTKGNK 744


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/735 (30%), Positives = 396/735 (53%), Gaps = 31/735 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+VG
Sbjct: 11  PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVG 70

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T+++
Sbjct: 71  EVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKIS 130

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI 
Sbjct: 131 NLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEII 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + +I NP I+I+++L+ + GPDFPTG I +++++ I E++  G+G   + ++W  E 
Sbjct: 191 DATINIIKNPNITIDQILKIVKGPDFPTGAI-IQNKQGIREAFLTGKGKVIISSKWHQE- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N   
Sbjct: 249 ----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKA 304

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F +
Sbjct: 305 NLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNL 363

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R+EI+ GL+ A   +DE+I +IR  +        +V  F  T NQ  AI+++RL 
Sbjct: 364 NKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRLY 423

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +  ++  E   L+ + +K   +LN+     N+I   + E K+ F      G +R 
Sbjct: 424 RLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKRK 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGDSLKIA 554
           +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D     
Sbjct: 478 SQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWISQ 537

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDS-- 610
                 D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V     
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFI 597

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
             T  LL+VS  G     + S++      K    +K+S ++ +     ++    +  ++ 
Sbjct: 598 NSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIIT 657

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +    +        +N
Sbjct: 658 KNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDVLIFTNKNNYKRLDQN 717

Query: 725 DLLGWLGKRGGVGSL 739
            +  ++  R   G  
Sbjct: 718 LIPIYI--RPKKGIR 730



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I   +NS +         + +  +I    T +  +     ++S  D       +  K   
Sbjct: 593 IKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSY 652

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             +I+  G+        I    + S  + A + K+ D +  AL       +L+ +     
Sbjct: 653 CCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKD-DYIISALSLQNNKDVLIFTNKNNY 711

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
             L    +       + I++L++   N + I+  F  +    + ++ +      +  S++
Sbjct: 712 KRLDQNLIPIYIRPKKGIRILVEKKKNKEQIIFGFAINDQMSISILDTNDQITDINVSDL 771


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/753 (28%), Positives = 391/753 (51%), Gaps = 53/753 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E +  +++   ++  Y  Y++S I  RA+PD+RDG KPVHRR+++ M E G  F   ++
Sbjct: 4   KEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKNYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG V+GK HPHGD SVYD++VR+AQ +  RY LI GQGNFG+ID D  AA RYTE
Sbjct: 64  KSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++ +++E +L  ++++ VD +  +++   EP+V P+  PNLL NG+SGIAVGMAT++P 
Sbjct: 124 IKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E  EA  + ID  +ISIE+L++YI  PDFPTGGI +   E + + +  GRG   +R
Sbjct: 184 HNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGI-IYGYEGVKKYFLTGRGKILLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++   EE+     C++V EIPYQ+ K  LI K  +L+   ++  L +IRDES  +   ++
Sbjct: 243 SKVHFEEI-NNRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRIV 301

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           +   +++D   L+ ++F  + +ET F +N   L  G+ P ++ L  ++K ++ HR +V+ 
Sbjct: 302 YNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGK-PTILNLKDLIKHFVNHRHDVII 360

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430
           RR+ + +     R  I++G  I   N++ +I +I++    +  K  ++ +++L+E QV +
Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIKYNLSEIQVKS 420

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL L+L SL KLE  +IK E  ++  +   +  ++++   Q   I  E+  VK  +    
Sbjct: 421 ILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKIISNKFLQKKIIKKELNIVKTKYGD-- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               RRT              +  +      + I+N G+I+    +   +   +  + ++
Sbjct: 479 ---LRRTEI-------NYLGLENEVYNNKFVITITNTGYIKKNYLNKYKIGVTYKCKKNN 528

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVY 608
           L+  + A     IL    +GK + L    +     +  G+AIQ LI +N  + I ++ + 
Sbjct: 529 LEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVLKKSKGQAIQNLIKINKKEKICSSILI 588

Query: 609 DST--------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD- 659
           +            +++++  G        +   N +     +K+ +++ +        + 
Sbjct: 589 EKNNDKKYLNKNYVILITKNGIIKKTTLIQYYKNPKN---LIKIINKDYIIYAKLTNENS 645

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719
            + +  ++ K++ F    I         +  + K+     +IC    +    +  + + +
Sbjct: 646 EIFIAEKSGKIIKFDESTI---------KKIALKNDLY--IICINDLKKEYILVVSEKGF 694

Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  N           +G        ++G  ++
Sbjct: 695 VKISN----------SIGIKTINVTKKTGFLVA 717


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/762 (28%), Positives = 368/762 (48%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ M E+ LD     
Sbjct: 1   MAEKILRTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A IDNPE++ ++L+E++ GPDFPTGG+ + ++  + + Y  G G  ++
Sbjct: 181 PHNLGEVIDAVQAYIDNPEVTTQELMEFMPGPDFPTGGV-IANKSELPQIYETGMGKIKL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R ++ VE  +       ++++EIPY       ++ +  +A+L+ +K++  + DI ++S +
Sbjct: 240 RGKFEVELGKRKADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D D +   ++  + +E  F +NM  ++ G  P+ + L GIL+ +L  
Sbjct: 300 EGIRIVLELRKDADIDKIKNILYKKTKLEDTFGVNMLAIADG-RPETLNLKGILRNFLNF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           + E   R+ +  +Q    + E+ +GL+ A   ID IIAI+R     K             
Sbjct: 359 QYENTERKYNVLLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLTTGDVTN 418

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        + + TE Q  AIL +RL  L  LE   ++ E    L +  +   +L 
Sbjct: 419 IHFKVPGFEEDAKKLAFTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEYKKILG 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  Q    I  ++  +K  F+        R T  E     +A   ++ +  + +  V+  
Sbjct: 479 SRAQMNRVIKEDLAAIKAEFATP------RRTLIE--DGPEAVYDESAVAVQEMVFVMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ + L   + D +             +    TD+I L +  G  Y + A ++ +G  R
Sbjct: 531 FGYCKLLDKSTYDRNQETV--DTEQVHVVKCLNTDKICLFAASGSLYQIKAMDVPAGKLR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I+ L   +  +D +         K    +  +       V   E   N R     
Sbjct: 589 DKGTPIENLSKFDGAKDTIVYLTSAEDMKGRIFVFATKMAMVKQVPSEEFETNNRV-VAA 647

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSY-KDGGIS 698
            K+   +++  V+ V G+  V +       L F++++I  + +  +GVR     K+  + 
Sbjct: 648 TKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEISMLKKASRGVRGIRLTKNEELE 707

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +           +D  G+  + +       L KR G GS V
Sbjct: 708 KLYLIGENP---IVDYKGKEVHLNRL----KLAKRDGKGSKV 742


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/735 (30%), Positives = 397/735 (54%), Gaps = 31/735 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+VG
Sbjct: 11  PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVG 70

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T+++
Sbjct: 71  EVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKIS 130

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI 
Sbjct: 131 NLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEII 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + +I NP I+I+++L+ + GPDFPTG I +++++ I E++  G+G   + ++W  E 
Sbjct: 191 DATINIIKNPNITIDQILKIVKGPDFPTGAI-IQNKQGIREAFLTGKGKVIISSKWHQE- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N   
Sbjct: 249 ----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKA 304

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F +
Sbjct: 305 NLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNL 363

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R+EI+ GL+ A   +DE+I +IR  +        +V  F+ T NQ  AI+++RL 
Sbjct: 364 NKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRLY 423

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +  ++  E   L+ + +K   +LN+     N+I   + EVK+ F      G +R 
Sbjct: 424 RLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKRK 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGDSLKIA 554
           +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D     
Sbjct: 478 SQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIGQ 537

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDS-- 610
                 D ++L+S     Y++P   +     +  G  I  +     N+ I+ AF+     
Sbjct: 538 GVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEFI 597

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
             T  LL+VS  G     + S++      K    +K+S ++ +     ++    +  ++ 
Sbjct: 598 NSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIIT 657

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +N   + ++I+ IP  S   KGV+  + KD  I   +     + +    +        +N
Sbjct: 658 KNGYAVRYNIEDIPVQSTISKGVKAANLKDDHIISALSLDNNKDVLIFTNKNNYKRLDQN 717

Query: 725 DLLGWLGKRGGVGSL 739
            +  ++  R   G  
Sbjct: 718 LIPIYI--RPKKGIR 730


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/776 (29%), Positives = 373/776 (48%), Gaps = 43/776 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  VEE +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ MSEMGL   
Sbjct: 17  DDAVEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPE 76

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
               KS R+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D   AA  
Sbjct: 77  KGHVKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLDNGPAA-P 135

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+   A L+   +DED VD    Y+ +  +P V P+++PNLL NG SGIAVGMAT
Sbjct: 136 RYTEARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASGIAVGMAT 195

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           ++  HN+ E   AA  LID+PE  +E+L+ ++ GPD PTGG  +   + I ++YR GRG 
Sbjct: 196 NMAPHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGG-RIVGLDGIRDAYRTGRGS 254

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-D 308
           F++RA   +E V      IVVTE+PYQV   RL EK+ + + +K++  + D +D +    
Sbjct: 255 FKMRATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQDLTDRHH 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++       DPD ++  ++  + +E  F +N   L  G+ P+ + L  +L+ ++ HR
Sbjct: 315 GLRLVLTVKSGFDPDAVLAQLYKFTPLEESFGINNVALVDGQ-PRTLGLKQMLEVFVGHR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
            EV+ RR+  R+     R+ +++GLL+A ++IDE+I I+R  D     +  ++  F LT+
Sbjct: 374 LEVVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQVFDLTQ 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + IL LRLR L +  +  +++E D+L  E E+++ +L S       ++ E+  V   
Sbjct: 434 VQAEYILELRLRRLTRFSQIDLEAERDDLRREIERLEEILGSETVLRALVSEELAAVAAE 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMI-EKEPITVVISNRGWIRSLKSHSVDLSALH 544
                    RRT   E +         ++    EP  V+++  G I  +           
Sbjct: 494 HGD-----SRRTVLLEAAEKPAVVAGASLEVADEPCHVLLTGTGLIARVTGEEPVPREGP 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQLLIDL 596
               D +   +H+ T   + +++  G+   L   +L S            G  +  LIDL
Sbjct: 549 RGSHDVIVAGVHSTTRSEVGVVTDRGRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDL 608

Query: 597 NHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
             ++  +               + + +  G    V+          G   + +   + + 
Sbjct: 609 ERDEHALGLIRLAEADIARGGGIALGTRHGVVKRVQPE---FPRSDGFEIISLKDGDAVV 665

Query: 652 LVV---KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKIC 706
            VV         +A +  + +LL F    +    RG  GV       G  +       + 
Sbjct: 666 GVVDLEDDEDLDLAFITSDAQLLHFPSSGVRPQGRGAGGVAGIKLAAGAHVLSFGAIDVT 725

Query: 707 EGLTWIDSAG--------RSYNRSENDLLGWLGK-RGGVGSLVPKGFPRSGKFLSS 753
                +  AG        ++ +     L  +  K R   G    +        + +
Sbjct: 726 APADVVTVAGSSSTLPLLQTGSLKVTSLTEFPAKGRATAGMRCHRFLRGEDTLIGA 781


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/720 (34%), Positives = 395/720 (54%), Gaps = 40/720 (5%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +++ Y+ YA+S I  RAIPD+RDG KPV RRI++AM EMGL     FKKSAR+VGEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGDQ+VYD+LVR+AQ F  RYPLI GQGN+G++DGD  A  RYTEA++++VA  +L+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   ++E   EP V PSKFPNLL NGT+GIAVG+ATSIP HN++E+ +A + 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L  NP +S E++LE + GPDFPTGG+ +E+ + I E Y  GRG  +V+A+  VE+V  G 
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGV-IENYKDIKEIYETGRGIVQVKAKAHVEKVQGGR 250

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+V+EIPYQV K+ LI+KIA+ + + R+  + DIRDES +D   ++    R    + +
Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKV 310

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++ +F  + +   FP+N+ VL  G  P+++ +  +L+E++ HR  ++ RR+ F ++  + 
Sbjct: 311 LKKLFKYTQLRKGFPVNLVVLINGE-PKLVGIKELLREFIKHRLSIILRRTRFFLKKAED 369

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R+ +++GLLIA  N+DE+I  IR      + + ++ +RF LTE Q  A+L+LRL  L  L
Sbjct: 370 RLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRLTSL 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  +++ E  +LL + E    ++ S +++      E   + + F         R TF E 
Sbjct: 430 ERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEETENLVKKFGDP------RRTFIEG 483

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS-LKIALHAHTTD 561
                            + V +   G +  ++         +  EG+S +   L    T+
Sbjct: 484 IEEKIEEGS--------LVVAVLENGKVMPVE---------NMPEGESPVVDILDVPFTE 526

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSK 620
            + L+S  G+ Y L     L G         +      + IV AF+ +    +LL+ +  
Sbjct: 527 GLFLVSNRGRVYWLAGSQALQG-------SKVNFKESEEYIVGAFIRERFADRLLLATRN 579

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIP 679
           G    +   E      +G   +K++ ++++  + + +    + +     K+  FSI +IP
Sbjct: 580 GMIKKIPLVEFE-YKAQGMRIIKLAEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIP 638

Query: 680 EMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
             + G KG +    +D            +    I        +        +  RG  G 
Sbjct: 639 AATPGTKGAQGIKVEDNDEVAGARVIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKGV 698



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 525 SNRGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +  G I+ +     +  A   +     E D +     +     IL+ +  GK        
Sbjct: 577 TRNGMIKKIPLVEFEYKAQGMRIIKLAEDDEVVGIAQSIDMSDILMFTRRGKVARFSIRE 636

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           + +     +  Q +   ++++      + +    ++VV+  G    + + EI    R  K
Sbjct: 637 IPAATPGTKGAQGIKVEDNDEVAGARVIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVK 696

Query: 640 TFLKV-SSEEKMKLVVKVTGDHVAVVGEN-RKLL--IFSIDQIPEMSRGK 685
               + S+ E++  ++ +  +   ++     +        + IP   R +
Sbjct: 697 GVNVLGSARERLVDLLPIKDELELLITTKLGRAFYDRIRAEDIPLSKRDR 746


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/735 (30%), Positives = 396/735 (53%), Gaps = 31/735 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+VG
Sbjct: 11  PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVG 70

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T+++
Sbjct: 71  EVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKIS 130

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ ++++ V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI 
Sbjct: 131 NLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEII 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + +I NP I+I+++L+ + GPDFPTG I +++++ I E++  G+G   + ++W  E 
Sbjct: 191 DATINIIKNPNITIDQILKIVKGPDFPTGAI-IQNKQGIREAFLTGKGKVIISSKWHQE- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N   
Sbjct: 249 ----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRIVIELNEKA 304

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F +
Sbjct: 305 NLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNL 363

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R+EI+ GL+ A   +DE+I +IR  +        +V  F  T NQ  AI+++RL 
Sbjct: 364 NKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRLY 423

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +  ++  E   L+ + +K   +LN+     N+I   + E K+ F      G +R 
Sbjct: 424 RLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKRK 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGDSLKIA 554
           +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D     
Sbjct: 478 SQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWISQ 537

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDS-- 610
                 D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V     
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFI 597

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
             T  LL+VS  G     + S++      K    +K+S ++ +     ++    +  ++ 
Sbjct: 598 NSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIIT 657

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +    +        +N
Sbjct: 658 KNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDVLIFTNKNNYKRLDQN 717

Query: 725 DLLGWLGKRGGVGSL 739
            +  ++  R   G  
Sbjct: 718 LIPIYI--RPKKGIR 730



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I   +NS +         + +  +I    T +  +     ++S  D       +  K   
Sbjct: 593 IKEFINSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSY 652

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             +I+  G+        I    + S  + A + K+ D +  AL       +L+ +     
Sbjct: 653 CCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKD-DYIISALSLQNNKDVLIFTNKNNY 711

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHN-QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
             L    +       + I++L++   N + I+  F  +    + ++ +      +  S++
Sbjct: 712 KRLDQNLIPIYIRPKKGIRILVEKKKNKEQIIFGFAINDQMSISILDTNDQITDINVSDL 771


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/768 (30%), Positives = 375/768 (48%), Gaps = 55/768 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MGL       K
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+GIAVGMAT++  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+      LI +P+ ++++++++I GPD P+GG IV     I ++Y  GRG F+ RA
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKDAYESGRGTFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+ D +       ++
Sbjct: 256 KVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLV 315

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P  ++ S++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR  V+ 
Sbjct: 316 IEIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQ-PQTLGLLDLLRVYIDHRLSVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D+    +  +++ F LTE Q + 
Sbjct: 375 RRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMAVFDLTEVQANY 434

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    ++++E D L  E  +++ +L S       ++ E+ EV E +    
Sbjct: 435 ILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSDELAEVAEKYGN-- 492

Query: 491 DLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITVVISNRGWI-----R 531
               RRT          A                    I  EP  V+++  G +     +
Sbjct: 493 ---DRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADEPCWVLLTASGILGRTVGK 549

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----LSGRG- 585
            ++   VD      K  D     +       I  +++ G+   L   +L      SG   
Sbjct: 550 PMREALVDP-GKRIKH-DVFTSIVPTTARGEIGAVTSTGRMVRLSVMDLVVFDDSSGTPV 607

Query: 586 --HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              G     ++ L   + +V     +    L + ++ G    V     +  T      +K
Sbjct: 608 LTTGVKATEVVALAKGEKLVGLVPLNEV--LALATANGVIKRVNPEYPLNQTEW--DVIK 663

Query: 644 VSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           +  ++ +      + D  A  +V +  KLL F   ++    R     +   K G    VI
Sbjct: 664 LKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGRAG-GGIAGIKLGAQDAVI 722

Query: 702 CFKI------CEGLTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPK 742
              +       E +T  +      +     L  +  K R   G    +
Sbjct: 723 ALGVTAPGSAAEVVTVTNGQDGMASAKVTPLAEYPQKGRATGGVRAHR 770


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/626 (31%), Positives = 350/626 (55%), Gaps = 20/626 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+  PK  +   +  TE Q +AI+
Sbjct: 361 SPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+     
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R +  E +         ++I +E   V ++  G+I+     S   S L     ++ D
Sbjct: 478 ---RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI-QLLIDLNHNQDIVTAF 606
            L     A TT  +L+ ++ G     P   L     +  GE + Q + +   N+ I+   
Sbjct: 535 RLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVE 594

Query: 607 V---YDSTCKLLVVSSKGNAFIVEES 629
           V   +D        +  G    VE  
Sbjct: 595 VLDQFDDATTYFAATRLGQIKRVERK 620


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 356/708 (50%), Gaps = 43/708 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            +E +  + +   +++ +L YA S I  RA+PD RDG KPV RRI++ M++MGL      
Sbjct: 10  ADERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQMADMGLRPDRGH 69

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVR+AQ F  R PL+ G GNFG++D D  AA RYT
Sbjct: 70  VKSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSLD-DGPAAPRYT 128

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A ++  G+DED VDF   Y+ + ++P V PS  PNLL NG SGIAVGMAT++P
Sbjct: 129 EARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGASGIAVGMATNMP 188

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P+  +E L+ ++ GPD P GG IV   + + ++Y  GRG FR 
Sbjct: 189 PHNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIV-GLDGVRDAYVSGRGSFRT 247

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   VE +      IVVTE+PY V   R+ EKIAE + +K++  +  ++D +       
Sbjct: 248 RATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQDLTDRQHGLR 307

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       +P+ ++E ++  + +E  F +N   L  G  P+ M L  +L  ++ HR  V
Sbjct: 308 LVIEVKSGFNPEAVLEQLYRATPLEESFGINNVALV-GGQPRTMGLRELLTVYVEHRLVV 366

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
             RRS +R++    R+ +++GLLIA  +IDE+IA+IR+ D     +  +V+ F L+  Q 
Sbjct: 367 TRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLVAVFDLSTPQA 426

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D IL L+LR L K    ++ SE D L  E  ++  LL    +    ++ E+ +V      
Sbjct: 427 DYILELQLRRLTKFSRIELTSERDELQREIAELTELLGDPARLRALVSDELAQVANQHGT 486

Query: 489 STDLGRRRTTFCEVSRADKATLQ-----------QAMIEKEPITVVISNRGWIRSLKSHS 537
                 RRT   E + A  A                 I   P  V++S  G +      +
Sbjct: 487 P-----RRTVLLESAGAPAAAAAAAPTSGRAGAVPLEIPDTPCWVLLSATGLLARTGDDA 541

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------LPAGNLLSGRGHGEA 589
             +        D++  ++ A     + L+++ G+           LP  +       G  
Sbjct: 542 RPVREGRRAAHDAILGSVPATARGEVGLVTSRGRIVRVNVLDAPALPPTDGPPSLSGGVG 601

Query: 590 IQLLIDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS 646
           +  L+ L   +  +T A +      L + ++ G    V          KG     + +  
Sbjct: 602 VGELVALEPGERPLTLAALGPDAPALALGTASGVVKRVSPE----APAKGDAWEVIALKD 657

Query: 647 EEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689
            +++         D V  V  + +LL F    +    R      GVRL
Sbjct: 658 GDQVVGAATAADDDEVVFVTSDAQLLRFRAASVRPQGRAAAGMAGVRL 705


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/761 (29%), Positives = 377/761 (49%), Gaps = 52/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L+     
Sbjct: 12  MSEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPH 71

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 72  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSIEGDGAAAMRYT 131

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 132 EARLEKFAEEVYLRDLDKTVDFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 191

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+ +A  A IDNP+ISI KL+EY+ GPDFPTGGI + ++  +   Y  G G  ++
Sbjct: 192 SHNLGEVIDAVQAYIDNPDISICKLMEYLPGPDFPTGGI-IANKSDLPSIYETGAGKIKL 250

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +  VE  +       +V+TEIPY       ++ +  +A+L+ +K++  + DI ++S +
Sbjct: 251 RGKIEVELGKRKADKDKLVITEIPYTMVGSGINKFLVDVADLVESKKLSDVVDISNQSNK 310

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  + +NM  ++ G  P+ + L GILK +L  
Sbjct: 311 EGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIADG-RPETLNLKGILKNYLDF 369

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + +   R+    ++    + EI +GL+ A   ID IIA++R     K       +     
Sbjct: 370 QYKNATRKYQTLLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAKNCLMTGDISN 429

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE  Q++ E    LA+  + + +L+
Sbjct: 430 INFKVKGFEEDAKTLHFTEKQATAILEMRLYKLIGLEILQLEKEYKETLAKIAEYEKILS 489

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + K     I  ++ ++K+ ++        R T  E     +A   +  I    +T V+  
Sbjct: 490 NRKFMDKVIKDDLDQIKKEYATP------RRTLIE--DGKEAVYDETAIPVSEVTFVMDR 541

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ + L   + D +    +  +     ++   TD+I + +  G  + + A ++  G  R
Sbjct: 542 FGYCKILDKATYDRNKETIETENP--YVVNCLNTDKICIFTNTGNLHQVKAQDIPGGKLR 599

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  L   +  ++ +    +       K L  + +    +V   E   N R     
Sbjct: 600 DKGTPIDNLSKFDGTREEIVYLCHAEGLKGRKFLFATKQALVKLVPGEEFETNNRT-VAA 658

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699
            K+  ++ +  V  V G   V +   +   L F  ++IPEM +  +GVR      G   +
Sbjct: 659 TKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPEMKKNARGVRGIKLTQGEALE 718

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            +     + + +        NR +      +GKR G GS V
Sbjct: 719 AVHLIGEDPVIYYKEKEVHLNRLK------IGKRDGKGSKV 753


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 195/709 (27%), Positives = 369/709 (52%), Gaps = 26/709 (3%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG+
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIK 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G+G   VR++   E +  G   +++TEIPY+V KS L+++I EL   K++  + +
Sbjct: 180 KAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVE 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           +RDE+      +     + ++ + +   ++  SD++  +  NM  +S G  P++M +  I
Sbjct: 240 VRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQI 298

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVM 417
           +  +L H+ EV+  R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  +
Sbjct: 299 IDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENL 358

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  +  TE Q +AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  
Sbjct: 359 IEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKE 418

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+K+ F         R +  E    +    ++ M+  E + + ++  G+I+     S
Sbjct: 419 ELNEIKKKFK------SERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRS 472

Query: 538 VDLSA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQL 592
            + S    +  K+GDSL      +T D +L+ +  G+   +P   L   R    G+ +  
Sbjct: 473 YNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQ 532

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL--KVSSE 647
           ++ +  ++ ++  F    +++    +  +  G         +   TR  K  +  KV   
Sbjct: 533 IVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTV-PLFKTTRFNKPLIATKVKEN 591

Query: 648 EKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKI 705
           + +  V++   D +  ++      L ++  ++ +   R  GV+  + K      V+   +
Sbjct: 592 DDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFV-VMTEGV 650

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLSS 753
            E  T + +  R   +  +  +  + KR   G  + K   ++  + +++
Sbjct: 651 SENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAA 699


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/762 (28%), Positives = 376/762 (49%), Gaps = 51/762 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 1   MQDSQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RY
Sbjct: 61  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D++ VDF   ++E + EP V P + PNLL NG  GIAVGMATS
Sbjct: 121 TEARLAKITQEAYLADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A  A + + +IS ++L++ I GPDFPTGGI+V +++ ++E Y  G G  
Sbjct: 181 IPPHNLAEVIDAVEAYMKHEDISTKQLMKCIKGPDFPTGGIVV-NKDDLLEIYESGAGKI 239

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +VR +  VEE+  G   +V+TEIPY        + +  +  L+  K+   + DI + S++
Sbjct: 240 KVRGKVEVEEMKGGKKRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+ M L  I++  +  
Sbjct: 300 EGIRIVIELKKGADVENLTNMLYKKTRLEDTFGVNMLAVADG-RPETMGLKKIIEHHVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP--------- 415
           + E+  R+    +     R EI +GL+ A   ID II I+R        +          
Sbjct: 359 QFELATRKYKTLLAKERDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQGITEN 418

Query: 416 ---------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M +    TE Q +AIL +RL  L  LE   +  E +  L    + + +LN
Sbjct: 419 IKFKSGISRKMAAMLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARYEDILN 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       I  ++   K+ ++      R+R T  E  +  +A  ++  +E++ +  ++  
Sbjct: 479 NYDSMAEVIIEDLEHFKKEYA------RKRRTVVENGQ--EAVYEEKKVEEQEVVFLMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++   + + +          K  ++   T ++ + +  GK + +   +L  G  R
Sbjct: 531 FGYAKTVDVATYERNKEA--ADAENKWIVNCINTGKLCVFTNTGKMHQIKVLDLPYGKFR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G+ I  + + +  Q++V  ++ D       KLL  + +G    V+ +E     R    
Sbjct: 589 DKGQPIDNVSNYDSTQEMV-VYMCDELQLRYAKLLFATKQGMIKKVKGNEFQVAKRT-IA 646

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGIS 698
             K+  ++++  V  +T D HV +  ++   L FS  ++ E  +   GVR    +     
Sbjct: 647 ATKLQEDDELISVQVITDDQHVVLQTKDGYFLRFSAQEVAEKKKAAVGVRGIKLRKNDEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + I          I    R    +       + KR G G+  
Sbjct: 707 EQIYLFYEGTEHKISYGDRELTLNRL----KVAKRDGTGTKA 744


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/768 (30%), Positives = 375/768 (48%), Gaps = 55/768 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  + +   +E  +L Y+ S I  RA+PD RDG KPV RRI++ M +MGL       K
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+ GEV+GKLHPHGD ++YD++VRLAQ F  R PL+ G GNFG++D D  AA RYTEA
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NGT+GIAVGMAT++  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+      LI +P+ ++++++++I GPD P+GG IV     I ++Y  GRG F+ RA
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIV-GLSGIKDAYESGRGTFKTRA 255

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313
           +  +E+V      IVVTE+PY V   ++IEKI + + AK++  + D+ D +       ++
Sbjct: 256 KVSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLV 315

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                  +P  ++ S++  + +E  F +N   L  G+ PQ + L  +L+ ++ HR  V+ 
Sbjct: 316 IEIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQ-PQTLGLLDLLRVYIDHRLSVVR 374

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ FR+     R+ ++ GLLIA ++IDE+I IIR+ D+    +  +++ F LTE Q + 
Sbjct: 375 RRTEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMAVFDLTEVQANY 434

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL LRLR L K    ++++E D L  E  +++ +L S       ++ E+ EV E +    
Sbjct: 435 ILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSDSALRELVSDELAEVAEKYGN-- 492

Query: 491 DLGRRRTTFCEVSRADKATLQ--------------QAMIEKEPITVVISNRGWI-----R 531
               RRT          A                    I  EP  V+++  G +     +
Sbjct: 493 ---DRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADEPCWVLLTASGILGRTVGK 549

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----LSGRG- 585
            ++   +D      K  D     +       I  +++ G+   L   +L      SG   
Sbjct: 550 PMREALIDP-GKRIKH-DVFTSIVPTTARGEIGAVTSTGRMVRLSVMDLVVFDDSSGTPV 607

Query: 586 --HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
              G     ++ L   + +V     +    L + ++ G    V     +  T      +K
Sbjct: 608 LTTGVKATEVVALAKGEKLVGLVPLNEV--LALATANGVIKRVNPEYPLNQTEW--DVIK 663

Query: 644 VSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVI 701
           +  ++ +      + D  A  +V +  KLL F   ++    R     +   K G    VI
Sbjct: 664 LKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGRAG-GGIAGIKLGAQDAVI 722

Query: 702 CFKI------CEGLTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPK 742
              +       E +T  +      +     L  +  K R   G    +
Sbjct: 723 ALGVTAPGSAAEVVTVTNGQDGMASAKVTPLAEYPQKGRATGGVRAHR 770


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/799 (28%), Positives = 356/799 (44%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 53  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 112

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 113 MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 171

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 172 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 231

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 232 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 290

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 291 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 350

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 351 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 409

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 410 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 469

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 470 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 529

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM---------------------------------- 514
                 RRT   +       T   A                                   
Sbjct: 530 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 584

Query: 515 ---------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                          IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 585 AKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 644

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQD 601
               T     L+++ G+       +L +                    +    D    + 
Sbjct: 645 FETSTRATYGLVTSAGRLVLAHVVDLPALPATATLSLKGGVQADELIGMTESTDPIRGER 704

Query: 602 IVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------------- 640
           ++TA   +        +S        G A       +   TR G                
Sbjct: 705 VITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 762

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 763 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 822

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 823 VAAFNVVPAGKVAWTYEEG 841



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 764 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 823

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 824 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 883

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 884 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 935


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/758 (28%), Positives = 368/758 (48%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 8   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 68  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 127

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L+ +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 128 ARLQKITQEAYLEDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI V +++ ++  Y  G G  ++
Sbjct: 188 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGI-VANKDELLAVYSTGMGKIKI 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY        + +  I  L+  K+   + DI ++S+++ 
Sbjct: 247 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + 
Sbjct: 307 IRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQY 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 366 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 425

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 426 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKYEDILGSR 485

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K       R T  +    ++A +++  IE+  +  ++   G
Sbjct: 486 AAMAKVIIKELESFKKEYAKP------RKTVID--NLEEAVVEEKKIEEMDVVFLMDRFG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           + +++   + + +       +  +  L    TD+I + +  G+ + L   +L  G  R  
Sbjct: 538 YAKTVDVATYERNKEAANTEN--RYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 595

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 596 GTPIDNLSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 654

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +  +  + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 655 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 714

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+  G+    +          R   G+ 
Sbjct: 715 YLLNAEDVVNIEVKGKEVALNRL----RTAGRDTKGTK 748


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/753 (30%), Positives = 372/753 (49%), Gaps = 37/753 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +    L+  + + Y+ YALS I  RA+PD+RDG KPVHRRI+ AM E+ L   A ++K 
Sbjct: 64  RIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKC 123

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYDSLVR++Q F  R  LI G GNFG+ID D  AA RYTE +
Sbjct: 124 ARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMRYTECK 183

Query: 136 MTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ ++ + +L+ +D   V++   ++    EP + PS  P++L NG+SGIAVGMATSIP H
Sbjct: 184 LSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPH 243

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI  + LALIDN  I+ ++L++Y+  PDFPTGG+I+    S  + Y  G     +R 
Sbjct: 244 NLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLII-GNNSCKDLYEKGISSIILRG 302

Query: 255 RWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +  VE          + +++TEIP+Q+ KS LI K+A+L+ +K I  + DIRDES     
Sbjct: 303 KINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKGI 362

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  DP  +++ I   S ++  F   M  +   +   V  L  IL  +L  RR+
Sbjct: 363 RIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILV-NLKEILSLFLHFRRK 421

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNID---EIIAIIRNEDKPKPVMVSRFSLTENQ 427
           ++ +   F ++ I ++  ILKG+ I+   ID   E I    N  + K +++  F L++ Q
Sbjct: 422 IIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILM-EFGLSQEQ 480

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AILNL+LR L KLE  +I ++ +   +   ++  +L+S       I  +I+ + EI+ 
Sbjct: 481 SEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCILSSNILIDGIIKNQIKNISEIY- 539

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                G  R T    S  +    +   IE     ++I+   +I+             +  
Sbjct: 540 -----GFPRKTLLINSINENIIEELETIENYESVIMITQY-YIKKMFLESFESQTRGTKG 593

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597
              L   +GD +      +  D ++ +S+ G AY +    +        G  I  ++   
Sbjct: 594 KRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILSILKGL 653

Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            N  I +       ++   L++++ KG       S     + +G   L +   + +K V 
Sbjct: 654 ENNQISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDENDSLKWVR 713

Query: 655 KV-TGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT 710
           K    D V +  +  KLL F+    ++    R  KG++        I         + +T
Sbjct: 714 KCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAIT 773

Query: 711 --WIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              I      Y +        + KRG  G  V 
Sbjct: 774 NFIILLTEMGYGKRIKVTELKIQKRGKKGIKVI 806


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/799 (28%), Positives = 358/799 (44%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  +++ F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADK----------------------------------------- 507
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 508 --------ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKI 553
                   A      IE EP  V++S  G I      ++D+      S    ++ D +  
Sbjct: 549 AKKTGERSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNVRSTSDERLRD-DQITT 607

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQ 600
                T     L+++ G+       +L +                    +    D    +
Sbjct: 608 IFETSTRATYGLVTSAGRLVLAHVVDLPALPASATLSLKGGVQADELIGMTESTDPIRGE 667

Query: 601 DIVTAFVYDSTCKLLVVSSK------GNAFIVEESEIIANTRKGKT-------------- 640
            ++TA   +        S+K      G A       +   TR G                
Sbjct: 668 RVITAIAMEQPTSG-KASAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 728 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 787

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 788 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 847

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 848 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 216/758 (28%), Positives = 367/758 (48%), Gaps = 49/758 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 8   EEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYTE
Sbjct: 68  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 127

Query: 134 ARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ +   L  +D+D V+F   ++E + EP V P K PNLL NG  GIAVGM TSIP
Sbjct: 128 ARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSIP 187

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +  +A + +P+I+ E++++YI GPDFPTGGI V +++ ++  Y  G G  ++
Sbjct: 188 PHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGI-VANKDELLAVYSTGMGKIKI 246

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE+   G   +V+TEIPY        + +  I  L+  K+   + DI ++S+++ 
Sbjct: 247 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSSKEG 306

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ M +  I++  +  + 
Sbjct: 307 IRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGK-PETMGIVPIIRHHVNFQY 365

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------- 422
           E+  R+    +     + EI +GL+ A   ID II I+R     K               
Sbjct: 366 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNIN 425

Query: 423 --------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                          TE Q  AIL +RL+ L  LE   +  + D  L    K + +L S 
Sbjct: 426 FKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNISKYEDILGSR 485

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+   K+ ++K       R T  +    ++A +++  IE+  +  ++   G
Sbjct: 486 AAMAKVIIKELESFKKEYAKP------RKTVID--NLEEAVVEEKKIEEMDVVFLMDRFG 537

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           + +++   + + +       +  +  L    TD+I + +  G+ + L   +L  G  R  
Sbjct: 538 YAKTVDVATYERNKEAANTEN--RYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFRDK 595

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L + N +++    +T     S  ++L  +      +V+ SE     R      K
Sbjct: 596 GTPIDNLSNYNSSEENFVYITNLAAISRSQVLFGTKSAMLKVVDGSEFDVAKRTT-AATK 654

Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++  +++  V  +  +  + +  E    L   I  IPE  +G  GVR      G     I
Sbjct: 655 LNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAI 714

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                E +  I+  G+    +          R   G+ 
Sbjct: 715 YLLNAEDVVNIEVKGKEVALNRL----RTAGRDTKGTK 748


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/732 (28%), Positives = 370/732 (50%), Gaps = 29/732 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGGI ++  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGI-IQGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R   V  L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSV-GLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +     K  ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGD 549
                R +  +   +        MI  E + V I+  G+ +     S   +      + D
Sbjct: 481 -----RRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHNQDIVTAF 606
                   +T   + + +  G         L     +  GE +   I  L  ++ ++  F
Sbjct: 536 YPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVF 595

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +     T   +  SS      V+++ +        R  K  + +  +  +  V      
Sbjct: 596 DFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASK-AIAIKGKNVLVSVAFAASQ 654

Query: 660 H--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG-LTWIDSA 715
           +  V +  +   L  F I +I  M ++  G +           ++   + +     +  +
Sbjct: 655 NHLVVMATQKGYLYKFPIGEIALMTAKSSGAKPAKI--SKKDRIVSMDLIDSEDLMVLMS 712

Query: 716 GRSYNRSENDLL 727
            R +++  N L 
Sbjct: 713 DRGHSKIINPLE 724


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/762 (30%), Positives = 382/762 (50%), Gaps = 57/762 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           EN+  +     ++  +  YA+S I  RAIPD+RDG KPV RRI+++M E+GLD     +K
Sbjct: 6   ENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKPHRK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD+LV + +P+  + PL+ G GNFG+IDGD AAA RYTEA
Sbjct: 66  SARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMRYTEA 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++  A  +L  +D+  V+F   ++E + EP V P+  PNLL NGT+GIAVGMAT++P H
Sbjct: 126 RLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNMPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ E  +A IDNP+I+ E L++YI GPDFPTGG I+ S E I   Y  G G  +VRA
Sbjct: 186 NPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINS-EDIRNIYETGEGRLKVRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           +  +E    G   IV+TEIPY V   K++L+E + +L+  K    + D+RDES+++   V
Sbjct: 245 KTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGIRV 304

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +  D + L+  ++  + ME  + +N+  +   +      L  ++ E+++ + E+ 
Sbjct: 305 VIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFK-LKNLVGEFVSFQEELY 363

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IRNED 411
            +     +   ++R+EI+ GL+ A   ID II I                     I  + 
Sbjct: 364 TKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINFKT 423

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           +      ++   TE Q DAIL + L  L  LE  ++  E  +LL   E+  S+L + K+ 
Sbjct: 424 EASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQSILGNKKEL 483

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
           +  I   ++E K+ F+       R T    +  A+        ++ E I ++I   G+ +
Sbjct: 484 FKVIKSNLKEYKKQFNVP-----RHTVLANMEIAEYV----EEVKVEDIYILIDKFGYTK 534

Query: 532 SLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGE 588
           S+ + S+  +S  + K+       +    TDR+ L +  G  Y + A  +     +  G 
Sbjct: 535 SVDNTSISRVSEDNLKD---FVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPKCKIKDKGT 591

Query: 589 AIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            I  L  ++  ++I+    ++     +LL  +  G   +V   E   N R   +  K+  
Sbjct: 592 LIHNLCKVDK-EEILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFETN-RAMISATKLEE 649

Query: 647 EEKMKLVVKVT-------GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGIS 698
            + +  V+ ++          V ++ E+   L F + ++ E+ +  KGV+  + +     
Sbjct: 650 ADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEKKDKV 709

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                 + E   +     +    S   +     KR   G   
Sbjct: 710 AFATVALPETEFF---EYQGKELSAKKVRNR--KRAAKGQKA 746


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/796 (28%), Positives = 358/796 (44%), Gaps = 102/796 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  +++ F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLMAVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +   + +  E+ E  + +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDHVVTSEMDEAVDKWGS 493

Query: 489 STDLGRRRTTFCEVSRADK----------------------------------------- 507
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGSGTSGISKSALEAVKSATTISSAEADVAAAAAA 548

Query: 508 --------ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-----SALHFKEGDSLKIA 554
                   A      IE EP  V++S  G I      ++D+     ++      D +   
Sbjct: 549 AKKTGEQSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNSRSASDERLHDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH-------GEAIQLLIDLNH------NQD 601
               T     L+++ G+       +L +           G     LI +         + 
Sbjct: 609 FRTSTRATYGLVTSAGRLVLAHVVDLPALPASATLSLQGGVQADDLISMTESTDPVRGER 668

Query: 602 IVTAFVYDSTCK-------------------LLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           +VTA   + +                     L + +  G             T      +
Sbjct: 669 VVTAIAMEQSADNGENGGDGETTAEAKPLPSLAIGTRNGVVKRWNRE--APTTMDSWPVI 726

Query: 643 KVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
            V   +++        D  +  V  +  LL F    +    R   G+      +G     
Sbjct: 727 DVKDGDEVVFAAVAENDDRLVFVSSDSSLLTFDAKNVRPQGRTAGGMAGIKLAEGAHVMA 786

Query: 701 ICFKICEGLTWIDSAG 716
                   + W    G
Sbjct: 787 FNVVPAGKVAWTYEEG 802



 Score = 45.5 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 47/227 (20%)

Query: 525 SNRGWIRSLKSHSVDLSA----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +  G ++     +         +  K+GD +  A  A   DR++ +S+D    T  A N+
Sbjct: 704 TRNGVVKRWNREAPTTMDSWPVIDVKDGDEVVFAAVAENDDRLVFVSSDSSLLTFDAKNV 763

Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              GR  G      I L     ++                                  GK
Sbjct: 764 RPQGRTAGG--MAGIKLAEGAHVMA---------------------------FNVVPAGK 794

Query: 640 TFLKVSSEEKMK------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
                   E         +V+ V GD  A+   EN    +  ++  P   R   GVR Q 
Sbjct: 795 VAWTYEEGENGLTSGAGAVVLTVAGDEDALPGTENGAAKVTPLEMYPTKGRATGGVRSQR 854

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 855 FLKGQNTLILAWVGPYPLHASTSAGSPVELPKPDM-----RRDGSGV 896


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/785 (28%), Positives = 359/785 (45%), Gaps = 91/785 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM Q A  +   + E+ VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIV-GRNGIREAYETGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +  + D +   +   
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +   + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 LVIEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALVNGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L E Q 
Sbjct: 374 IRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIAVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   +++SE D+L    E++D +L S +   N +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMSRIELESERDDLKQRIEELDRILASAEALDNVVISEMDEAVATYGT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDEDADGKLVPVVAHGDDGVSASAMAAARAAATVSSAAADVAAAAKAAT 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-----SALHFKEGDSLKIALH 556
               D A      I+ EP  V++S  G I      +++      SA      D +     
Sbjct: 549 KAGEDNAAAVALQIDDEPCAVMLSATGLIARTSEDALERWENRSSADKRVRDDQIISIFP 608

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDIV 603
             T     L+++ G+        L      G               +    D    + ++
Sbjct: 609 TTTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGMTENTDPIRGERVI 668

Query: 604 TAFVYDSTCK----------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
            A    +             L + +  G             T    + + +  ++++   
Sbjct: 669 AAIAMPTADDSGDHAAEPAPLALGTRNGVIKRWNRE--SPTTMDSWSIIDLKDDDEVLAA 726

Query: 654 VKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTW 711
            +    D +  V  +  LL F    +    R   G+      +G             + W
Sbjct: 727 AEARDEDRLVFVSTDSSLLTFDAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVIPANKVAW 786

Query: 712 IDSAG 716
               G
Sbjct: 787 NYEEG 791



 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 84/276 (30%), Gaps = 52/276 (18%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A E+  + E     TD  R       ++            E  P+ +  +  G I+    
Sbjct: 649 AEELIGMTEN----TDPIRGERVIAAIAMPTADDSGDHAAEPAPLALG-TRNGVIKRWNR 703

Query: 536 HSVDL----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGHGEAI 590
            S       S +  K+ D +  A  A   DR++ +STD    T  A N+   GR  G   
Sbjct: 704 ESPTTMDSWSIIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFDAKNVRPQGRTAGG-- 761

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
              I L     +                              A     K        +  
Sbjct: 762 MAGIRLAEGCSVAA---------------------------FAVIPANKVAWNYEEGDNG 794

Query: 651 K------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
                  +V+ V GD  A+   EN    +  ++  P   RG  GVR Q +  G  + ++ 
Sbjct: 795 LFSASGAVVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLILA 854

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           F     +      G      + D+     +R G G+
Sbjct: 855 FVGTYPVHASTEGGAGVELPKPDM-----RRDGSGT 885


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/732 (28%), Positives = 370/732 (50%), Gaps = 29/732 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           E  ++ +SL   + ER+  Y+   I+ERA+PD+RDG KPV RRI+ AM+E G  +  A++
Sbjct: 4   ESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYR 63

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG V+G  HPHGD S+YD+LVR++Q +  R PLI   GN G+ID D  AA RYTE
Sbjct: 64  KSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYTE 123

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++ +A  +L  +D+ AVD    +++   EP V PS+ PNLL NG SGI+ G AT IP 
Sbjct: 124 ARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPP 183

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A + L+ +P  S+E L++Y+ GPDFPTGGI ++  + I  +Y  GRG   +R
Sbjct: 184 HNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGI-IQGLDGIKNAYTTGRGKVYLR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A+  ++++  G   I +TE+PY+V KS L+ +I E+ + K +  + ++RD+++ +  ++ 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              ++  + + +++ +F  +D++  +  NM  ++  R   V  L   L  +L  R+EV+ 
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSV-GLKQALSAFLDFRKEVIR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430
           RR+ F ++    R EI++GL+     +DE++A IR  +     K  ++ +F  ++ Q +A
Sbjct: 362 RRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKKFQFSDPQAEA 421

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ L+L  L   +   +++E D L  +  + +S+L   K+    +  E++E+++ +S   
Sbjct: 422 IVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP- 480

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGD 549
                R +  +   +        MI  E + V I+  G+ +     S   +      + D
Sbjct: 481 -----RRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDD 535

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHNQDIVTAF 606
                   +T   + + +  G         L     +  GE +   I  L  ++ ++  F
Sbjct: 536 YPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVF 595

Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +     T   +  SS      V+++ +        R  K  + +  +  +  V      
Sbjct: 596 DFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASK-AIAIKGKNVLVSVTFAASQ 654

Query: 660 H--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKICEG-LTWIDSA 715
           +  V +  +   L  F I +I  M ++  G +           ++   + +     +  +
Sbjct: 655 NHLVVMATQKGYLYKFPIGEIALMTAKSSGAKPAKI--SKKDRIVSMDLIDSEDLMVLMS 712

Query: 716 GRSYNRSENDLL 727
            R +++  N L 
Sbjct: 713 DRGHSKIINPLE 724


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/790 (28%), Positives = 357/790 (45%), Gaps = 99/790 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L+    +
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+PTGG+I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMII-GRDGIREAYASGRGTLST 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   +++E+I+E +   ++  +    D S   +   
Sbjct: 255 RATTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +   + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 LVIELKTGFDPHAVLVQLLKHTPLQDNFAMNNVALVNGRPH-TMGLKEMLQVWIDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS FR      R+ +++GLL+A ++IDE+I +IR   N D  K  +++ F L + Q 
Sbjct: 374 IRRRSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMAVFDLDDIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   +++SE D+L    E+++ +L S K     +  E+      +  
Sbjct: 434 QYILDLRLRRLTKMSRIELESERDDLHKRIEELERILASDKALDRVVVDEMDGAVAEYGT 493

Query: 489 STDLGRRRTTFCEVSRADK----------------------------------------A 508
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDADAEGNLTPVVAEGMTGVSASALEAVKSANTVSSAAADVAAAKKAGE 548

Query: 509 TLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                 IE +P TV++S  G I           +S SV          D +       T 
Sbjct: 549 QSMALEIEDKPCTVMMSATGLIARATPEALSMFRSRSVSGERAT---DDQIVSIFRTTTR 605

Query: 561 DRILLLSTDGKAYTLPAGNLL-----------SGRGHGEAIQLLIDLNH--NQDIVTAFV 607
               L+++ G+       +L            SG    E I      +    + +VTA  
Sbjct: 606 ATYALITSAGRLVLAQVADLPVVPATNTLSLSSGVKADELIGQTESTDPIRGEHVVTAIA 665

Query: 608 YDSTCK-------------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +   K                   L + +  G             T    + + +   +
Sbjct: 666 MEPVSKKHSDDATDSDTTEPQALPPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGD 723

Query: 649 KMK-LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
           ++    +    D +  +  +  LL F    +    R   G+      +G           
Sbjct: 724 EIVFAAIARDEDRLVFISTDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGCKVAAFNVVAA 783

Query: 707 EGLTWIDSAG 716
           + + W    G
Sbjct: 784 DKVAWTYEEG 793


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/737 (29%), Positives = 365/737 (49%), Gaps = 66/737 (8%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +E +  + +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MARKTTAPPVEPFDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M++MGL     + KS+R++GEV+GKLHPHGDQ++YD+LVRLAQ F  R PL+ G GNFG+
Sbjct: 61  MADMGLRPDRPYVKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   +  +  G+DED VDF   Y+ + ++P V PS  PNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  A   L+ NP  ++E ++ ++ GPD PTGG IV   + I 
Sbjct: 180 SGIAVGMATNMAPHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++YR GRG FR RA   +E +      I +TE+PY V   +++EKIA+ + AK+I  + +
Sbjct: 239 DAYRSGRGTFRTRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVAN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           ++D +       ++       DP+ ++E ++  + +E  F +N   L  G  P+ + L  
Sbjct: 299 VQDLTDRTHGMRLVVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALV-GGQPRTLGLLE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ W+ HR EV+ RR+++R+     R+ +++GLL+A ++IDE+I +IR+ D     +  
Sbjct: 358 LLRVWVEHRIEVVRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+E Q   IL+L+LR L K    +++ E   L  E   ++ +L S       ++
Sbjct: 418 LMDVFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA--------------MIEKEPITV 522
            E+ +V   +        RRT   + +     +   A               I   P  V
Sbjct: 478 TEMGDVAATYGTP-----RRTVLLDSAGGATTSAAAAPGGARGRKPAEISLEIADAPTHV 532

Query: 523 VISNRGWIRSLK------------------------SHSVDLSALHFKEG-----DSLKI 553
           ++S  G +                              +   S    + G     D+L+ 
Sbjct: 533 LLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGASGAVSRHGRRHAHDALRG 592

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--------GRGHGEAIQLLIDLNHNQDIVTA 605
            +   +   I L++T G+   + A  L S            G  +  L++L   ++ +  
Sbjct: 593 DVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIPVSELVELAPGEEALAV 652

Query: 606 F-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAV 663
             + D    L + ++ G    V  S++ +N +   T + +   + +         D V  
Sbjct: 653 VSLADDAPTLALGTAGGVVKRVAASDVPSN-KDEWTVIGLKDGDSVVGAAPAGDDDEVVF 711

Query: 664 VGENRKLLIFSIDQIPE 680
           +  +  LL ++   +  
Sbjct: 712 ISSDSSLLHYAASAVRP 728


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/791 (28%), Positives = 364/791 (46%), Gaps = 82/791 (10%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            V    +  T V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRII+ M
Sbjct: 7   SVKPAFDPRT-VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQM 65

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +M L+    + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++
Sbjct: 66  GQMNLNPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSL 125

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D D  AA RYTEARM Q A  +   + ED VDF   Y+ +  EP V P+  PNLL NG S
Sbjct: 126 D-DGPAASRYTEARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGS 184

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT++ +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P+GG+IV  R+ I E
Sbjct: 185 GIAVGMATNMATHNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIV-GRKGIRE 243

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG    R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +   
Sbjct: 244 AYETGRGALTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGA 303

Query: 302 RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
            D +   +   ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +
Sbjct: 304 IDLTDRHNGTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPH-TMGLKEM 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVM 417
           L+ W+ HRR V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +
Sbjct: 363 LQVWVNHRRVVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +  F L E Q   IL+LRLR L K+   ++++E D+L    E++D +L S +   + +  
Sbjct: 423 IKVFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRILASAEALDDVVIA 482

Query: 478 EIREVKEIFSKS------TDLGRRRTTFCEVSRA-------------------------- 505
           E+ E    +          +    R                                   
Sbjct: 483 EMDEAVATYGTPRRTVLLDEDADGRLVPVAAHGDDGVSASAVAAARAAATVSSAAADVAA 542

Query: 506 ----------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-----SALHFKEGDS 550
                     D A      I+ EP  V++S  G I      +++      SA    + D 
Sbjct: 543 AAKAAKKAGEDNAAAMALQIDDEPCAVMLSATGLIARTSEDALERWENRSSADQRVKDDQ 602

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG-----------EAIQLLIDLNH- 598
           +       T     L+++ G+        L      G           E I    + +  
Sbjct: 603 IISIFRTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGTTENTDPI 662

Query: 599 -NQDIVTAFVYDSTCK----------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             + ++ A    S             L + +  G             T    + + +  +
Sbjct: 663 RGERVIAAIAMPSADDSGDNAVEPTPLALGTRNGVVKRWNRE--SPTTMDSWSVIDLKDD 720

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +++    +    D +  V  +  LL F    +    R   G+      +G  +       
Sbjct: 721 DEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVP 780

Query: 706 CEGLTWIDSAG 716
              + W    G
Sbjct: 781 ASKVAWNYEEG 791



 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 93/269 (34%), Gaps = 38/269 (14%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           A E+    E     TD  R       ++           +E  P+ +  +  G ++    
Sbjct: 649 AEELIGTTEN----TDPIRGERVIAAIAMPSADDSGDNAVEPTPLALG-TRNGVVKRWNR 703

Query: 536 HSVDL----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
            S       S +  K+ D +  A  A   DR++ +STD    T  A N+   R  G    
Sbjct: 704 ESPTTMDSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNV---RPQGRTAG 760

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +  +   +    A                   +V  S++  N  +G+  L  +S     
Sbjct: 761 GMAGIRLAEGCSAAAFA----------------VVPASKVAWNYEEGENGLFSASGA--- 801

Query: 652 LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
           +V+ V GD  A+   EN    +  ++  P   RG  GVR Q +  G  + V+ F     +
Sbjct: 802 VVLTVAGDSEALPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLVLAFVGAYPV 861

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                 G      + D+     +R G G+
Sbjct: 862 HASTQGGAGVELPKPDM-----RRDGSGT 885


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/799 (29%), Positives = 364/799 (45%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM---------------------------------- 514
                 RRT   +       T   A                                   
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 515 ---------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                          IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 549 AKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAY--------TLPAGNLLSGRGHGEAIQLL-----IDLNHNQD 601
               T     L+++ G+           LPA   LS +G  +A +L+      D    + 
Sbjct: 609 FETSTRATYGLVTSAGRLVLAHVVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGER 668

Query: 602 IVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------------- 640
           ++TA   +        +S        G A       +   TR G                
Sbjct: 669 VITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 728 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 787

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 788 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 847

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 848 RATGGVRSQRFLKGQNTLILAWAGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/799 (29%), Positives = 365/799 (45%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDHPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG F  
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADK----------------------------------------- 507
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 508 --------ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKI 553
                   A      IE EP  V++S  G I      ++D+      S    ++ D +  
Sbjct: 549 AKKTGEQSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSASDERLRD-DQITT 607

Query: 554 ALHAHTTDRILLLSTDGKAY--------TLPAGNLLSGRGHGEAIQLL-----IDLNHNQ 600
                T     L+++ G+           LPA   LS +G  +A +L+      D    +
Sbjct: 608 IFETSTRATYGLVTSAGRLVLAHVVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGE 667

Query: 601 DIVTAFVYDSTCKLLVVSSK------GNAFIVEESEIIANTRKGKT-------------- 640
            ++TA   +        S+K      G A       +   TR G                
Sbjct: 668 RVITAIAMEQPTSG-KASAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 728 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 787

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 788 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 847

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 848 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/799 (29%), Positives = 364/799 (45%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM---------------------------------- 514
                 RRT   +       T   A                                   
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 515 ---------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                          IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 549 AKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAY--------TLPAGNLLSGRGHGEAIQLL-----IDLNHNQD 601
               T     L+++ G+           LPA   LS +G  +A +L+      D    + 
Sbjct: 609 FETSTRATYGLVTSAGRLVLAHVVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGER 668

Query: 602 IVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------------- 640
           ++TA   +        +S        G A       +   TR G                
Sbjct: 669 VITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 728 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 787

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 788 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 847

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 848 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/799 (28%), Positives = 356/799 (44%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM---------------------------------- 514
                 RRT   +       T   A                                   
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 515 ---------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                          IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 549 AKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQD 601
               T     L+++ G+       +L +                    +    D    + 
Sbjct: 609 FETSTRATYGLVTSAGRLVLAHVVDLPALPATATLSLKGGVQADELIGMTESTDPIRGER 668

Query: 602 IVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------------- 640
           ++TA   +        +S        G A       +   TR G                
Sbjct: 669 VITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+      +G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 728 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 787

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 788 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 847

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 848 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/767 (27%), Positives = 375/767 (48%), Gaps = 57/767 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD+RDG KPV RR+++AM E+ L      
Sbjct: 1   MAEHIIRAEFSEVMQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAMDELNLRHDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV + Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +  + +    +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 121 EARLKKFTQEVYLADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A +++  ++ E LL YI GPDFPTGG++V +++ I   Y  G G  +
Sbjct: 181 PPHNLGEVVDAMIAYLEDESVANEDLLTYIQGPDFPTGGLVV-NKKDIKTIYTEGSGKLK 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V+TEIPY        + +  +  L+ +K+   + DI +ES+
Sbjct: 240 LRGKVVFEPGKKRGEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    +  D + L   ++  + +E  F +NM  +  G  P+ + L  I+     
Sbjct: 300 KEGIRIVLELKKGTDIERLKNLLYKKTKLEDTFGVNMLAIVDG-RPETLSLRDIIAHHTE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------- 417
               ++ R+    +  +  + E+ +GL+ A   ID II I+R     K            
Sbjct: 359 FHYGLVKRKYQTLLSKLYDQREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVG 418

Query: 418 ------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S TE Q +AIL+LRL  L  LE   ++ E + ++A   + + +L
Sbjct: 419 NIRFKSSESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVANIAEYEDIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           ++       +  ++ ++K+ +       R R T  E     +A  ++  +++E +  V+ 
Sbjct: 479 HNPVSMQRVMKQDLMKIKKEYQ------RERRTVVE--DGAEAVFEEEPLKEEQVYFVMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
             G+ ++    +   +  +       K  +    TD+I + +  G  + +   ++ +G  
Sbjct: 531 RFGYAKTFDKATYQRNQENASRD--YKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKY 588

Query: 584 RGHGEAIQLLIDLN-HNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
           +  G  I  L + +  ++ I+     ++     L   + +G   IV  +E    T++  +
Sbjct: 589 KDKGTPIDNLGNYDSSDEAIIAVLAAEAMTHDSLFFATEQGMLKIVSGTEFQ-VTKRTVS 647

Query: 641 FLKVSSEEKMKLVVKVTG-------DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
             K+S  + +  V  +         D V +  +    L FS++++PE  +G  GVR    
Sbjct: 648 ATKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKL 707

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
               I         +G+T +D  G+  + ++      L KR   GS 
Sbjct: 708 NKDDILLHTYLMEADGITSMDYKGKRLDFNKL----KLAKRDTKGSK 750


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/760 (28%), Positives = 370/760 (48%), Gaps = 49/760 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             EE +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   
Sbjct: 3   QQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 62

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRY 122

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TEAR+ ++ +   L  +D+D VDF   ++E + EP V P K PNLL NG+ GIAVGM TS
Sbjct: 123 TEARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTS 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            P HN+ E+ +  +A I NP+I+ E+++EYI GPDFPTGGI + +++ +++ Y  G G  
Sbjct: 183 TPPHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGI-IANKDDLIQIYSTGMGKI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           ++R +  VE+V  G   IV+TEIPY        + +  +  L+  K+   + DI ++S++
Sbjct: 242 KIRGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSK 301

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D   L+  ++  + +E  F +NM        P+ + L  I++  +  
Sbjct: 302 EGIRIVLELRKGADTQNLINLLYKKTKLEDTFGVNMLA-VAEGRPETLGLVPIIRHHVKF 360

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           + E+  R+    ++    + EI +GL+ A   ID II I+R     K             
Sbjct: 361 QYELATRKYQTLLKKELDKKEIQEGLIKACDVIDLIIEILRGSKNVKDARACLTDGVTDN 420

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                     M S    TE Q  AIL +RL+ L  LE   +  + ++ L    + + +L 
Sbjct: 421 ITFKSAQSEKMASELRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAEYEDILE 480

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           +       +  E++  K+ ++        R T  +    ++A +++  IE+  +  ++  
Sbjct: 481 NRATMAKVLIKELQSYKKQYAVP------RKTLID--NLEEAVVEEKKIEEMDVVFLMDR 532

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ +++     + +          +  L    TD+I + +  G+ + L   +L  G  R
Sbjct: 533 FGYAKTVDVSVYERNKEA--ADTENRYILTCKNTDKICIFTNKGQMHLLKVLDLPYGKFR 590

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  L + + +++     +        +LL  +      +V+ SE     R     
Sbjct: 591 DKGIPIDNLSNYDSSEENFIYIINLGAIIHSRLLFGTKTAMLKMVDGSEFDVAKRTT-AS 649

Query: 642 LKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD 699
            K++ ++++ +V  +TG+  V +  E    L      IPE  +G  GVR      G    
Sbjct: 650 TKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEASTIPEKKKGAVGVRGMKLNAGDALS 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            I     E    ++  G+    +       +G R   G+ 
Sbjct: 710 NIYVLDGENEQTVEVKGKEVVLNRL----RVGNRDTKGTK 745


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/772 (29%), Positives = 377/772 (48%), Gaps = 53/772 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  + +D VDF   ++    EP V P++ P LL NG +GIAVGMAT+
Sbjct: 121 TETRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +A +AL+  PE+S +KLL  I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLG-SGVRETYLSGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +V+TE+P+Q+ K+  IEK+AE +   RI  + DIRDES
Sbjct: 240 PMRGVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  DP  ++  +   + +++ F   +  L  G+  Q+     +   +L
Sbjct: 300 DRDGMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422
            +R + L RR+S  ++  + R+E+++GL  A   + ++I++I+            +    
Sbjct: 359 EYREQTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQEARDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E + L  E+ ++  LL         +  E++++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSRLQRLLEQRDVLLAALVDELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           ++ F+       RRT   E      A    +      +              ++I   G 
Sbjct: 479 RKRFATP-----RRTRLIEGGDHLLAERAASQRPNAELQRKQALGALPGDARLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           ++ +    +    +H ++    GD     ++ L      R+L L+  G+   +      +
Sbjct: 534 VKVISPQVLGR--MHLQDAAALGDEPSPARLILPIAPPPRLLALTAQGRVALVR-WEF-A 589

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--------LLVVSSKGNAFIVEESEIIAN 634
           G+  G   + L      + ++       T          L ++SS G    +   ++   
Sbjct: 590 GQQPGALERFLPTAMEGETVINLLQLPDTDDDHASRTLSLGLLSSDGRFKRLPLQDLQEL 649

Query: 635 TRKGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRL 689
           + +  + LK+     +   V+   G  +A+V +  ++L   +D   +P M +  +G V L
Sbjct: 650 SGRAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRLPVDDTALPLMGKLAQGPVAL 709

Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           +      +   +          I +  +            L  RG +G L  
Sbjct: 710 RLLPGEQLVGAVSLAADAPGQLIAATRQGRLIRRPLGDLRLCHRGDLGDLAI 761



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 524 ISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S+ G  + L    +        S L  KEG SL+  +       I L++  G+   LP 
Sbjct: 632 LSSDGRFKRLPLQDLQELSGRAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRLPV 691

Query: 578 GN----LLSGRGHGEAIQLLIDLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEI 631
            +    L+     G     L+     + +V A     D+  +L+  + +G        ++
Sbjct: 692 DDTALPLMGKLAQGPVALRLLP---GEQLVGAVSLAADAPGQLIAATRQGRLIRRPLGDL 748

Query: 632 IANTRK--GKTFLKVS----SEEKMKLVVKVTGDHVAVVGENRK 669
               R   G   + ++     ++++  V   T   + ++    +
Sbjct: 749 RLCHRGDLGDLAIDLNATAAPDDRLVSVCLATP-LLGLISSQGR 791


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/733 (30%), Positives = 385/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K       S+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 82/548 (14%), Positives = 166/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + FS   I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      +  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/733 (30%), Positives = 385/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K       S+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 83/548 (15%), Positives = 166/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + FS   I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      I  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/799 (28%), Positives = 355/799 (44%), Gaps = 105/799 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADKATLQQAM---------------------------------- 514
                 RRT   +       T   A                                   
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 515 ---------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                          IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 549 AKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQD 601
               T     L+++ G+       +L +                    +    D    + 
Sbjct: 609 FETSTRATYGLVTSAGRLVLAHVVDLPALPATATLSLKGGVQADELIGMTESTDPIRGER 668

Query: 602 IVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------------- 640
           ++TA   +        +S        G A       +   TR G                
Sbjct: 669 VITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSW 726

Query: 641 -FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
             + +   +++        D  +  +  +  LL F    +    R   G+       G  
Sbjct: 727 PVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAKGAR 786

Query: 698 SDVICFKICEGLTWIDSAG 716
                      + W    G
Sbjct: 787 VAAFNVVPAGKVAWTYEEG 805



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 70/227 (30%), Gaps = 47/227 (20%)

Query: 525 SNRGWIRSLKSHSVDLSA----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +  G I+     +         +  K+GD +  A  A   DR++ +S+D    T  A N+
Sbjct: 707 TRNGVIKRWNREAPTTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNV 766

Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              GR  G      I L     +                                   GK
Sbjct: 767 RPQGRTAGG--MAGIKLAKGARVAA---------------------------FNVVPAGK 797

Query: 640 TFLKVSSEEKMK------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
                   E         +V+ V GD  A+   EN    +  ++  P   R   GVR Q 
Sbjct: 798 VAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQR 857

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 858 FLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 899


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/733 (30%), Positives = 385/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K       S+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + L        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKLPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 80/548 (14%), Positives = 164/548 (29%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ + + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKLPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDEIIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + F    I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFLATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         E +                      I  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEDIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/796 (28%), Positives = 354/796 (44%), Gaps = 100/796 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  GRG    
Sbjct: 196 THNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYANGRGTLTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IV+TE+PY V   ++IE+I++ +  +++  +    D +   +   
Sbjct: 255 RAATHIEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR V
Sbjct: 315 IVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F L E Q 
Sbjct: 374 IRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFDLDEVQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGS 493

Query: 489 STDLGRRRTTFCEVSRADK----------------------------------------- 507
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADVAAAAAA 548

Query: 508 --------ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----GDSLKIA 554
                   A      IE EP  V++S  G I      ++D+ +A    +     D +   
Sbjct: 549 AKKTGERSALTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRDDQITTI 608

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQD 601
               T     L+++ G+       +L +                    +    D    + 
Sbjct: 609 FETSTRATYGLVTSAGRLVLAHVVDLPALPASATLSLKGGVQADELIGMTESTDPIRGER 668

Query: 602 IVTAFVYDSTCKLLVV----SSKGNAFIVEESEIIANTRKGKT---------------FL 642
           ++TA   +            S  G A       +   TR G                  +
Sbjct: 669 VITAIAMEQPTSGKASAEDESEDGAAEAKPLPPLAIGTRNGVIKRWNREAPTTMDSWPVI 728

Query: 643 KVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
            +   +++        D  +  +  +  LL F    +    R   G+      +G     
Sbjct: 729 DLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAA 788

Query: 701 ICFKICEGLTWIDSAG 716
                   + W    G
Sbjct: 789 FNVVPAGKVAWTYEEG 804



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 727 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 786

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 787 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 846

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 847 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 898


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/733 (30%), Positives = 385/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K    +   +F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVLKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/548 (14%), Positives = 165/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + F    I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFLATAINPMGRIASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      +  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/760 (28%), Positives = 375/760 (49%), Gaps = 49/760 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++EN+        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   IQENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ + +    +D+  VDF   ++E + EP V P K PNLL NG  GIAVGMATSI
Sbjct: 124 EARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A + N EI++ +L+EYI GPDFPTGGI+V +++ ++  Y  G G  +
Sbjct: 184 PPHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVV-NKDDLLSIYETGTGKIK 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE+   G   +V+TEIPY        + +  +A L  +K+   + DI ++S+++
Sbjct: 243 IRGKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKE 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +NM  ++ G+ P+ + L  I++  +  +
Sbjct: 303 GIRIVIELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGK-PETLSLKQIIEHHVDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------I 407
            ++  R+ +  +       E+ +GL+ A   ID II I                     I
Sbjct: 362 FDIATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEGI 421

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             + K       +   TE Q  AIL++RL  L  LE   + +E +  + +    + +LN+
Sbjct: 422 HFKTKTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIALYEDILNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+++VK+ +S      R R T  E   A +A  ++  IE+  +  ++   
Sbjct: 482 YSSMSKVIIKELQKVKKEYS------RVRRTVVE--NAAEAVYEEKKIEEMEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ R++   + + +          K  L    T +I L +  G+ YT+    L  G  R 
Sbjct: 534 GYARTIDKSTYERNKET--ADSENKYVLTCMNTGKICLFTDAGRMYTIKVQELPFGKFRD 591

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  +  + + +   + +      +      L  V++KG   +VE  E     R   +  
Sbjct: 592 KGIPVDNVSNYDSAAEQIVFVGSMADIIHTTLCFVTAKGMVKLVEGKEFDVAKRT-ISST 650

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           K++ E+ + +V      +H+ +  +    L F   +IP   +   GVR     +    + 
Sbjct: 651 KLAEEDSIVMVQNAEAMEHLVLQTKEGYFLKFLKAEIPYKKKTALGVRGIKMNESDCVEH 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                      I    ++   ++      LGKR   G+  
Sbjct: 711 AYMLENRTEYPISYKEKTLVLNKL----KLGKRDTKGTKT 746


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/675 (33%), Positives = 368/675 (54%), Gaps = 31/675 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    + N+  + L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +   
Sbjct: 6   ENTIPKDNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAF 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVY+++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 66  PDRPYYKSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+  +A  +L+ +D+D VD    Y++ + EP V PS++PNLL NG  GIAVG+
Sbjct: 126 AMRYTEARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGL 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN+ E+ +  LA IDN +I+ ++L+EY+ GPD PTGGI++   +S++ +Y  G 
Sbjct: 186 ATNIPPHNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILI-GEKSLLSAYETGE 244

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G    RA+  +E++  G   IV+TE PY+  KS++++ I+E+   KR    +  + DIRD
Sbjct: 245 GKVPYRAKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRD 304

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S+D    + +++ +F  +D++     NM  LS G+ P+ M L  I
Sbjct: 305 ESDRNGIRAVIEFKKSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGK-PETMGLKTI 363

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           +K ++ H++E++ RR+   +    +R  I++G + A   +DE+IA IR+ +  K     +
Sbjct: 364 IKHYVEHQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASENL 423

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F  TE Q  AIL L L  L  LE    + E   L    +K++ +L S K+    I  
Sbjct: 424 IDKFGFTELQAQAILELMLYRLTGLEIKVFQKEYAELEKLIKKLEKILASEKELLRVIKT 483

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E++EV + +S +      R T             + +I  E + + +SN G+I+ +   +
Sbjct: 484 ELKEVCDKYSDA------RRTTIISDDTKSKIDVEELIVVEEVMITVSNDGFIKRIPLKN 537

Query: 538 VDLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE---- 588
            + S      + ++EGD LK  + ++T D +L+ +  G  Y     N+   R   +    
Sbjct: 538 YNRSNSDPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQTKGINIPELRWKEKGERL 597

Query: 589 -AIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             +   ++L+ ++ IV     D+    K     + G    +   +    +      LK+ 
Sbjct: 598 DGVIKSLNLD-DEKIVGIISLDNFTPGKGFRFITSGGGIKISGLDKFQTSYTKLQALKLR 656

Query: 646 SEEKMKLVVKVTGDH 660
             +++  V  +  + 
Sbjct: 657 DTDELINVSLIDLED 671



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 127/390 (32%), Gaps = 55/390 (14%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI-LNLRLRSLRKL 442
             + E L G++ +    DE I  I + D   P    RF  +   +    L+    S  KL
Sbjct: 591 KEKGERLDGVIKSLNLDDEKIVGIISLDNFTPGKGFRFITSGGGIKISGLDKFQTSYTKL 650

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR-RTTFCE 501
           +  +++   + +      ++      K        E+    EI            T    
Sbjct: 651 QALKLRDTDELINVSLIDLED---ESKFLKFTTRNELEFTLEIPEVEDATRNILPTQLFN 707

Query: 502 VSRADKATLQQAMIEKE--PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
           +   D         E E   + + IS +G +++      D   +  K            +
Sbjct: 708 LPEDDIVVDVNDSEELEYFELNLGISEKGKLKAYSKIKPDYLKVKTK------------S 755

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIV---TAFVYDSTCKLL 615
           T+++L+ +  G  Y +P   + +      +I   I  +  N+ I+   +   YD    + 
Sbjct: 756 TEQLLIFTNTGFIYKVPVFMMKNIFTKDMSIDQFIGKIGRNEKIIRIASVASYDEDRCIY 815

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVS------SEEKMKLVV--KVTGDHVAVVGEN 667
             +  G        E          F K          +++  V   K++  ++ +V + 
Sbjct: 816 TFTKTGMVKKTLLKEYEG------EFFKQPCHKFKYEFDELVSVDIDKISLGYLIMVTKK 869

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--------------CFKICEGLTWI 712
              + F ++ +  M +   GV   S KD    +VI                 + E  T +
Sbjct: 870 GMAIRFPVENVNSMGKIASGVTGISLKDD--DEVIYGKYYSNYISNGQNSISLNEDNTEL 927

Query: 713 DSAGRSYNRSENDL-LGWLGKRGGVGSLVP 741
               ++  ++E  +    L  R G G+ V 
Sbjct: 928 ILTSKNKTKTEVRIRDIKLQNRAGRGTSVM 957


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/493 (43%), Positives = 319/493 (64%), Gaps = 11/493 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 238 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 297

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 298 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 357

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 358 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 417

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 418 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 476

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 477 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 536

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 537 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 595

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 596 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 655

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 656 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 715

Query: 487 SKSTDLGRRRTTF 499
                   RRT  
Sbjct: 716 GD-----DRRTEI 723


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/733 (30%), Positives = 387/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 K---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K     +VS+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KYAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 83/548 (15%), Positives = 166/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + FS   I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      I  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/539 (38%), Positives = 316/539 (58%), Gaps = 19/539 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            VK + L+  + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G      + K 
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+GK HPHGD ++YD+LVR+AQ +  RY L+ GQGNFG+   D AAA RYTE R
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M  +A  +++ +D+D VDF   Y+ +  EP V P++FPNLL NG++GIAVGMAT+IP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 196 VQEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +     +D+P+ S  +LLE     I GPDFPTG  I+   + I ++YR GRG   
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLIT 280

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +RA    EE+ +G  C+VVTE+PYQV   RL   I E +   +I  + D+RDE S    +
Sbjct: 281 MRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQ 339

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R   P +++ +++  S ++  F  NM  L  G VP+ + LD  ++ W++H+ E
Sbjct: 340 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ +  +  + R  IL+G L A   IDE++A+IR+    D  +  +++   + + Q
Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            DAIL ++LR L  LE  +I  E + L+ + E  + +L S ++Q   +  E+ E+   + 
Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDELDEIVAKYG 518

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  RRT     S        + +I +E + V ++  G+I+  K+          K
Sbjct: 519 DE-----RRTRILPFSG---EMNVEDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGK 569


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 213/759 (28%), Positives = 368/759 (48%), Gaps = 49/759 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+Y++LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + +  + +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + N +IS++ L+ Y+ GPDFPTGG++V +++ ++  Y  G G  RV
Sbjct: 185 PHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGGLVV-NKDDLLRIYETGTGKLRV 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +    ++  G   +V+TEIPY        + +  IA L+  K+   + DI ++S+++ 
Sbjct: 244 RGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D + L   ++  + +E  F +NM  ++ G  P+ + L  +++  +    
Sbjct: 304 IRIVLDLKRDADVENLTNMLYKKTKLEDTFGVNMLAVADG-RPETLSLKQVIEHHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           +V  R+ +  +     + EI +GL+ A   ID II I                     IR
Sbjct: 363 DVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKKCLVDGVTEGIR 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + K       +   +E Q  AIL++RL  L  LE   ++++    +      + +LN+ 
Sbjct: 423 FKGKSSEKAAQKLHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIAIYEDILNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+ ++K+ +      G +R T  E   A++   ++  +E+  +T ++   G
Sbjct: 483 DSMAEVIMKELDQIKKEY------GTKRRTVIE--NAEEVVYEEKKMEEMEVTFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
           ++R++   + + +       +  K   +   TD+I + + +GK +++   ++     R  
Sbjct: 535 YMRTIDKSAYERNKEAANAEN--KYVFNCMNTDKICIFTDNGKMHSIKVADIPLVRFRDK 592

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G     L + +  Q+    V          LL V++     +V  +E     R      K
Sbjct: 593 GTPADNLSNYDSAQERMLYVAPLASVKENTLLFVTAASMCKLVSGAEFDVAKRT-IVSTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ E+ +  V      + V    E    L F    I  M +   GVR     +G   D  
Sbjct: 652 LAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAMKKTSIGVRGMKLAEGDKLDHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     I    + Y  +       L KR   G+  
Sbjct: 712 YLLESRQEYTITYHDKPYVLNRI----KLSKRDSKGTKP 746


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/761 (29%), Positives = 372/761 (48%), Gaps = 53/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            E  +        + + Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 3   SESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+SLV +AQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYT 122

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+T+  +   L  +D+D +DF   ++E + EP+V P + PNLL NG  GIAVGMATSI
Sbjct: 123 EARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSI 182

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A  A + N  I+ ++L++YI GPDFPTGGI+V +++ + E Y  G+G  +
Sbjct: 183 PTHNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVV-NKDDLPEIYETGQGKIK 241

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE++  G   +V+TEIPY        + +  +  L+  K+   + DI ++S+++
Sbjct: 242 IRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  +
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANG-RPETLGLKAIIEHHVDFQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------ 416
            E+  R+    +     + E+ +GL+ A   ID II I+R     K              
Sbjct: 361 FELTTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENI 420

Query: 417 ---------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                    M +    TE Q  AIL +RL  L  LE   ++ E +  L    + + +LN 
Sbjct: 421 KFKSQISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYEDILNH 480

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  E+   K+ +      GR+R T  E   A+ A  ++  +E++ +  ++   
Sbjct: 481 YDSMATLIMEELDAFKKEY------GRKRRTAIE--NAEAAVFEEKKVEEQEVIFLMDRF 532

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ +++     + +          K  ++   T +I L +  GK + +   +L  G  R 
Sbjct: 533 GYAKTVDVSVYERNKEA--ADSENKYVVNCLNTGKICLFTDTGKMHQIKVMDLPYGRFRD 590

Query: 586 HGEAIQLLIDL-NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  + +  +  + IVT       +  KLL  + +G    V+ SE     R      
Sbjct: 591 KGVPIDNVSNYSSSEEQIVTICDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKRT-IAAT 649

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K+  E+ +  V  V    ++ +   +   L F   +IPE  +G  GVR     K   +  
Sbjct: 650 KLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQKTDELEQ 709

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSL 739
           +  F+              Y   E  L    L KR GVG+ 
Sbjct: 710 IHLFEEG------TDTKVKYGEKEVTLNRLKLAKRDGVGTK 744


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/677 (33%), Positives = 370/677 (54%), Gaps = 37/677 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N   +    + N+  + L  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKN--ENIIPKDNNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYG 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVY+S+V LAQ F  R PLI G GN+G+
Sbjct: 59  SYMLKAFPDRPYYKSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ +A  +L+ +++D V+    Y++ + EP V PS++PNLL NG 
Sbjct: 119 IDGDGAAAMRYTEARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGA 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+AT+IP HN+ E+ E  LA IDN EI+  +L++YI GPD PTGGI++   +SI+
Sbjct: 179 FGIAVGLATNIPPHNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILI-GEKSIL 237

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G    RA+  +E++  G   I++TE PY+  KSR+++ I+E+   KR    + 
Sbjct: 238 SAYETGEGKVAYRAKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALE 297

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    ++ D    D +++ +F  +D++     NM  L+ G+ P+
Sbjct: 298 SITDIRDESDRSGIRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGK-PE 356

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--- 410
            M L  I++ ++ H++E++ RR+   +    +R  I++G + A   +DE+IA IR+    
Sbjct: 357 TMSLKAIIRYYVEHQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSK 416

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                 ++S+F  +E Q  AIL L L  L  LE    + E   L    +K++ +L+S K+
Sbjct: 417 KDASENLISKFGFSEAQAQAILELMLYRLTGLEIEIFEKEYAQLEKLIKKLEKILSSEKE 476

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +  E++E+ + +      G  R T       +     + +I  E + V IS  G++
Sbjct: 477 LLKVVKSELKEISDKY------GNDRRTEIIHDDNESKIDVEELIIVEEVMVTISKDGFV 530

Query: 531 RSLKSHSVDLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           + +   +   S+     + ++EGDSLK  ++++T D +L+ +  G  Y     N+   R 
Sbjct: 531 KRIPLKNYTRSSSNPEDIEYREGDSLKYLINSNTKDTLLVFTDKGFMYQTKGINIPEMRW 590

Query: 586 HGEA-----IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             +      I   ++L+ N+ I+ A     ++ +     ++  G   +    +    T  
Sbjct: 591 KEKGDRLDEIIKSLNLD-NEKIIAAISIDNFNPSKAFRFITKHGGIKLSSLDKFQ--TAY 647

Query: 638 GK-TFLKVSSEEKMKLV 653
           GK   LK+   +++  V
Sbjct: 648 GKLQALKLRDGDELIDV 664



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/527 (12%), Positives = 166/527 (31%), Gaps = 60/527 (11%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
               +    +E++ +    I+ +E          +++I++     R   +    +ES  D
Sbjct: 451 EIFEKEYAQLEKLIKKLEKILSSEKELLKVVKSELKEISDKYGNDRRTEIIHDDNESKID 510

Query: 309 VR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPL------------NMNVLSMGRVPQV 354
           V   I++     ++  D  ++ I + +   +                 +   +      V
Sbjct: 511 VEELIIVEEVMVTISKDGFVKRIPLKNYTRSSSNPEDIEYREGDSLKYLINSNTKDTLLV 570

Query: 355 MPLDGILKEWLAHRREVLFRRSS-FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
               G + +        +  +    R+  I + + +    +IA ++ID            
Sbjct: 571 FTDKGFMYQTKGINIPEMRWKEKGDRLDEIIKSLNLDNEKIIAAISIDNFNPSKAFRFIT 630

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K   +   SL + Q       +L++L+  +  ++       L E+EK   + +    ++ 
Sbjct: 631 KHGGIKLSSLDKFQTAY---GKLQALKLRDGDELIDVSMRELEEEEKFLKVKSKLGLEFT 687

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE--PITVVISNRGWIR 531
                + E               T     S  D+ +  +   E E   ++V ++++   +
Sbjct: 688 LEIKNLEETARNILP--------TQLFNFSEEDEISQVEDTNEIEYFELSVGVTDKNKFK 739

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +              DSLK  +  ++   +L+ S  G  Y +P   + +       ++
Sbjct: 740 FYERIK----------EDSLK--VKTNSLKELLIFSNRGYVYKIPVFLMRNVLNKEINVE 787

Query: 592 LLI-DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             I  +   + I++      YD    +   + KG        E   +  K   +     +
Sbjct: 788 AFIGKMEKGEKIISLISIDSYDEDLGVYTFTKKGMVKKTLLKEFEGDFLKQACYKFKFED 847

Query: 648 EKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI------- 697
           +++  V    +   H+ ++ +    + F ++ +  M +   GV   S +D          
Sbjct: 848 DEVVSVEMNQIKIGHLIMITKKGMAIRFPVENVNIMGKIASGVTGISLRDEDQVIFGKYH 907

Query: 698 ------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                  D       +       +        +     L  R G G+
Sbjct: 908 SNYKKSDDNTVMLSSDDTKITLVSKGKERSVMDISDIKLQNRAGRGT 954


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/733 (30%), Positives = 386/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K       S+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   +++    
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVVDKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   GV+L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 82/548 (14%), Positives = 165/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVVDKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + F    I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELINVDINFENATVILVTKNGMGIKFLATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      I  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/694 (31%), Positives = 362/694 (52%), Gaps = 26/694 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     +      +E++    +R  +   +L Y+ S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MARGTRTEPVEEFDEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFM 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M +MGL       KSAR VG+V+G+LHPHGD ++YD+LVRL QP+  R PLI G GNFG+
Sbjct: 61  MDDMGLRPDRGHVKSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
            D D  AA RYTE RM   A+ +   +DED VDFR  Y+  ++EPVV P+  PNLL NG 
Sbjct: 121 PD-DPPAAMRYTECRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+I  HN+ E+ +A   LI +PE  ++ L+ +I GPD PTGG IV   + + 
Sbjct: 180 SGIAVGMATNIAPHNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIV-GLDGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  G G F++RA   VE+VGR    IV++E+PY V   ++IE + +L+ +K++  + D
Sbjct: 239 DAYATGNGSFKMRATARVEQVGR-RKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIAD 297

Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           +++ +       ++        P+ ++E ++  + MET F +N   L  G+ P+ + L  
Sbjct: 298 LKNLTDRHSGLSIVIEVKNGFVPEAILEQLYRFTPMETSFGINAVALVDGQ-PRTLGLRQ 356

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416
           +L  +L HR +V+ RRS+FR      R+ +L+GLL+A ++IDE+I +IR+ +   + K  
Sbjct: 357 MLDVYLEHRYDVVRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSENRGEAKDR 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           + S F L+E Q + ILNL L  L + +   ++SE++ L    E +D++L         + 
Sbjct: 417 LRSVFDLSEPQAEYILNLTLGRLTRYDRIVVESEMEELRRTIEALDAILGDETVLRGVVG 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKS 535
            E+ E+   F        RRT   E +           +  +P   ++S+ G + R+   
Sbjct: 477 DELAEMAATFGTP-----RRTILLESAGQTVTAATPVEVADDPCWALLSSTGLLARTSDD 531

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
             +       K  D +  A+       I +++  G+   +   +L +        ++Q  
Sbjct: 532 RPIGTDGGRAKH-DVIVSAVRTTARGEIGVVTAGGRVRRIGVLDLPALPATAGAPSLQGG 590

Query: 594 IDLNH----NQDIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           + ++     +   +    +      L + + +G    V+   +  + R     + ++  +
Sbjct: 591 VPVSEVVQLDDRPLALMTFAEDVPGLALGTRQGVVKRVKPDHL--SNRDEWDLIGLADGD 648

Query: 649 KMKLVVK-VTG-DHVAVVGENRKLLIFSIDQIPE 680
            +   V  VTG + +A V  + +LL F  D +  
Sbjct: 649 AVVGAVPLVTGTEQLAFVTSDAQLLHFGADAVRP 682


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/493 (42%), Positives = 319/493 (64%), Gaps = 11/493 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 238 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 297

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 298 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 357

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           +TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 358 FTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 417

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 418 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 476

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 477 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 536

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 537 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 595

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 596 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 655

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 656 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 715

Query: 487 SKSTDLGRRRTTF 499
                   RRT  
Sbjct: 716 GD-----DRRTEI 723


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/493 (42%), Positives = 319/493 (64%), Gaps = 11/493 (2%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 204 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 263

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 264 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 323

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           +TEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLLANG SGIAVGMAT+
Sbjct: 324 FTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 383

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+    L+L  NP+ISI +L+E I GPDFPT G+I+  +  I  +Y  GRG  
Sbjct: 384 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 442

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309
           ++R+R  +EE G G   IVVTEIP+QV K+R+IEKIAEL+  K+I  + D+RDE++    
Sbjct: 443 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 502

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    +  +  +++ +++  + ++T F +NM  L  G  P+++ L   L  +L H++
Sbjct: 503 VRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNG-RPKLINLKEALVHYLEHQK 561

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTEN 426
            V+ RR+ + ++    R  IL+GL IA  +IDEII+ IR  D  K  M     RF L+E 
Sbjct: 562 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 621

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL++RLR L  LE  +I++E + LL    +++++L   +     +  E+ E+++ F
Sbjct: 622 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRF 681

Query: 487 SKSTDLGRRRTTF 499
                   RRT  
Sbjct: 682 GD-----DRRTEI 689


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 222/733 (30%), Positives = 385/733 (52%), Gaps = 39/733 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI       + N+  + L   + + YL YA+   K+RA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
              +       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD AAA RYTEAR++ ++  +L+ ++++ VD    Y++ + EP V P+++PNLL NGT
Sbjct: 118 IDGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGT 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T+IP HN++E+ +  LA IDN EI+  +L+ YI GPD PTGG+++   ++++
Sbjct: 178 FGIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E +  G   IV+TE PY+  K+R+++ I+++   KR    + 
Sbjct: 237 SAYETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES       +    +++D    D +++ ++  +D++     NM  L+ G+ P+
Sbjct: 297 GIVDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            M L  I+  ++ H+++V+ RR+   ++  ++R  I++G + A   +DE+IA IR     
Sbjct: 356 TMGLKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSK 415

Query: 414 KPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K       S+F  T+ Q +AIL L L  L  LE    + E   L  + + +  +L +   
Sbjct: 416 KDAHENLVSKFGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESV 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E++EV E++        RRT   E   ++     + +I  E + V +SN G+I
Sbjct: 476 LLGVIKDELKEVAEVYGDE-----RRTALIE-DESEAKIDLEELIVAEDVMVTLSNEGFI 529

Query: 531 RSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           + +        +VD + + ++EGD LK  + ++T D + + +  G  Y +   ++     
Sbjct: 530 KKIPLKTYNRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVSDKKW 589

Query: 584 RGHGEAIQLLID--LNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE ++ LI      ++ I+   +   +        +++ G        + +    K 
Sbjct: 590 KDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693
              +K+ +++ +  V  +        V +   N    + S  ++    R   G++L   K
Sbjct: 649 LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGIQLVPLK 708

Query: 694 DGGISDVICFKIC 706
            G     I F   
Sbjct: 709 SGNQIKSIRFVDN 721



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 83/548 (15%), Positives = 166/548 (30%), Gaps = 73/548 (13%)

Query: 243 YRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           YRL     +V  +   E   ++      +    +   V K  L E +AE+   +R   L 
Sbjct: 442 YRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKE-VAEVYGDERRTALI 500

Query: 300 DIRDESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM-- 355
           +   E+  D+   IV      +L  +  ++ I + +   +    N      G   + +  
Sbjct: 501 EDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKFLIK 560

Query: 356 -PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 L  +         + +S   +    + E L+ L+      DE I  + + +   
Sbjct: 561 SNTKDTLAIFTDKGTVYQIKCNSVSDKKWKDKGERLEDLIRGLSLEDEKIIALESIENFL 620

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
           P             + +       ++K    +  +    L+A K K D LL S     +Q
Sbjct: 621 PNKC----FKFITANGL-------IKKTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQ 669

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVS------------RADKATLQQAMIEKEPITV 522
                 E++     +  +      F + +               K+       E +   +
Sbjct: 670 DEERFVEIETTNGLNFVVSEPELEFTDRNILGIQLVPLKSGNQIKSIRFVDNYEYKEFII 729

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
            I+ +G I++  + + +               +  ++   I+  S  GK +  PA  LL 
Sbjct: 730 GINKKGNIKTFSNMNSNSYEK-----------VKVNSFRNIIAFSNKGKVFKFPAY-LLQ 777

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIANTR 636
                    L+     ++ I+     +          +   S +G        E +    
Sbjct: 778 NTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFN 837

Query: 637 KGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
               +   + ++++  V +      V +V +N   + FS   I  M R   GV   S KD
Sbjct: 838 NQIAYKFKTPKDELINVDINFENATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKD 897

Query: 695 G-GISDVICFKICEGLT--------------------WIDSAGRSYNRSENDLLGWLGKR 733
              +         EG+                      I  + +      N     L  R
Sbjct: 898 DNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNR 957

Query: 734 GGVGSLVP 741
            G GS + 
Sbjct: 958 AGRGSSLM 965


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/795 (29%), Positives = 364/795 (45%), Gaps = 102/795 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM + A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIV-GRSGIREAYESGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +   
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +LK W+ HRR V
Sbjct: 315 LVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPH-TMGLKEMLKVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L + Q 
Sbjct: 374 IRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLDDIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASDEALDGVVIDEMDEAVAAYGT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTAATVSSAAADVAAAAKAAK 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKIAL 555
               D AT     I+ EP  V++S  G I      +V+       S +  K+ D +    
Sbjct: 549 KAGEDNATATALQIDDEPCAVMLSATGLIARTHEDAVERWENRSGSDVRTKD-DQIVSIF 607

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDI 602
              T     L+++ G+        L S    G               +    D    + +
Sbjct: 608 RTTTRSSYGLITSAGRLVLAHVVELPSVAPDGPLNVSGGVKAEELLGMTENTDPIRGERV 667

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---------------TFLKVSSE 647
           + A    ST         G+    E + +   TR G                + + +   
Sbjct: 668 IAAIAMPSTDD---AGKDGDG--AEPAPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDG 722

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +++    +   GD +  V  +  LL F    +    R   G+       G          
Sbjct: 723 DEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLATGCSVAAFAVVP 782

Query: 706 CEGLTWI-DSAGRSY 719
            E + W  D      
Sbjct: 783 AEKVAWTYDEGENGL 797


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/772 (28%), Positives = 376/772 (48%), Gaps = 60/772 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ YA+S I +RA+PD+RDG KPV RR+++AM E+GL      
Sbjct: 1   MSEQIIKTEFSDVMQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV + Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + +    +D++ VDF+  ++E + EPVV P + PNLL NG  GIAVGM TSI
Sbjct: 121 EAKLQKFTQDVYLADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +   A +DNPEI+ E+L+EY+ GPDFPTGGI+V  +E +   Y  G G  +
Sbjct: 181 PPHNLSEVVDGVKAYMDNPEITTEELMEYVKGPDFPTGGIVVNQKE-LKNIYETGSGKMK 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E+  +      +V+TEIPY       S+ I  +  LI  K    + D+ +ES+
Sbjct: 240 LRGKVHFEKAKKRSERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    R+ D + L   ++  + +E  F +NM  ++ G+ P+++ L  I+     
Sbjct: 300 KEGIRIVLELRRNADAERLENLLYKKTRLEDTFGVNMLAIANGK-PELLSLKDIISHHTK 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIA-----------------------YLNIDEI 403
              EVL R+    ++    + EI +GL+ A                        +N D  
Sbjct: 359 FHYEVLTRKYETLLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLINGDTE 418

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               + +   K    S+   TE Q  AIL +RL  L  LE   ++ E   +L + +K   
Sbjct: 419 NITFKTQKSKKEA--SKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDKYQD 476

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L         +  ++ ++K+ +      G  R T  E++ A  A ++   IE++ +  V
Sbjct: 477 ILEHPASMKRVMKKDLEKIKKNY------GFDRKT--ELTNAKAAVVKALPIEEKEVVFV 528

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +   G+ + L  ++ + +     +    +  +H   TD+I + +  G  + +   ++ SG
Sbjct: 529 MDRFGYSKILDKNTYERNEETVLKE--YRHIVHCMNTDKICVFTDTGVMHQIKVQDIPSG 586

Query: 584 --RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKG 638
             R  G  +  + + +   + +   V D T K   LL V++     +V+ +E I   +K 
Sbjct: 587 RLRDKGTPLDNIGNYDSRNEQILLIVPDRTLKEASLLFVTASSMIKLVDGAEFI-VQKKT 645

Query: 639 KTFLKVSSEEKMKLVVKVTGDH------VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
               K++  + +  V  V          + +  E    L F ++++    +G  G+R   
Sbjct: 646 VASTKLAEGDILAAVRLVAAKEGSINAQIIMQSEEGYFLRFPLEEVTRKKKGAIGIRGMK 705

Query: 692 YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSLVPK 742
            ++      +     E     D+    Y   E       L  R G G  V +
Sbjct: 706 LQEDDHIKHVYLTGVENE---DNPSIIYKEKELVFSKIRLMGRDGKGVKVRR 754


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/735 (31%), Positives = 398/735 (54%), Gaps = 31/735 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L   L  R+  YA   I+ERA+PD+RDG KPV RRI++AM+++ L F   +KKSAR+VG
Sbjct: 11  PLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVG 70

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EVIGK HPHGD S+YD++VR++Q +    PL+  QGN G+IDGDSAAA RYTEAR+T+++
Sbjct: 71  EVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKIS 130

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L+ +++D V F   +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI 
Sbjct: 131 NLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEII 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + +I NP I+I+++L+ + GPDFPTG I +++++ I E++  G+G   + ++W  E 
Sbjct: 191 DATIDIIKNPNITIDQILKIVKGPDFPTGAI-IQNKQGIREAFLTGKGKVIISSKWHQE- 248

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ EIPY+V K  L++KI ++I       +++IRDE+      ++   N   
Sbjct: 249 ----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKA 304

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           + + + + +F  + +   +  N N++ + + P+ + L  I+K +++H +EV  +R+ F +
Sbjct: 305 NLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNL 363

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLR 437
              + R+EI+KGL+ A   +DE+I +IR  +        +V  F+ T NQ  AI+++RL 
Sbjct: 364 NKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQSTAIVDMRLY 423

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L   +  ++  E   L+ + +K   +LN      N+I   + EVK+ F      G +R 
Sbjct: 424 RLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQF------GIKRK 477

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH---SVDLSALHFKEGDSLKIA 554
           +  E    D    Q+ +I ++ I + IS  G+I+ + ++     +LS+   K  D     
Sbjct: 478 SQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWISQ 537

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVYDS-- 610
                 D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V     
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEFI 597

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
             T  LL+V+  G     + S++      K    +K+S ++ +     ++    +  +V 
Sbjct: 598 NSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIVT 657

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +N   + ++I+ IP  S   KGV+  + KD  I   +  +  + +    +        +N
Sbjct: 658 KNGYAVRYNIEDIPIQSTISKGVKAANLKDDQIISALSLQTNKDIIIFTNKNNYKKIDQN 717

Query: 725 DLLGWLGKRGGVGSL 739
            +  ++  R   G  
Sbjct: 718 LIPIYI--RPKKGIR 730



 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I   +NS +         + +  +I    T +  +     ++S  D       +  K   
Sbjct: 593 IKEFINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSY 652

Query: 521 TVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             +++  G+        I    + S  + A + K+ D +  AL   T   I++ +     
Sbjct: 653 CCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKD-DQIISALSLQTNKDIIIFTNKNNY 711

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
             +    +       + I++L++   N++ V  F +    ++++
Sbjct: 712 KKIDQNLIPIYIRPKKGIRILVEKKKNKEEV-IFSFAINKEMIL 754


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/704 (31%), Positives = 358/704 (50%), Gaps = 35/704 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++     E ++ V +   ++  +L YA S I  RA+PD RDG KPV RRI++ M+EMGL 
Sbjct: 5   DNQAPATERIEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTEMGLR 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                 KSAR+ GEV+GKLHPHGD ++Y++LVR+AQ F  R PLI G GNFG++D D  A
Sbjct: 65  PDRGHVKSARVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD-DGPA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+   A  +   +DED VDF   Y+ +  +P V P+ FPNLL NG SGIAVGM
Sbjct: 124 AARYTEARLAAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGIAVGM 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT++  HN+ E+  AA  L+DNP+ +++ L+ YI GPD P+GG  +     + ++Y  GR
Sbjct: 184 ATNMAPHNLVEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGG-AIAGLSGVRDAYATGR 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G FR+RA+  +E +      +VVTE+PY V   R+IEKI + + AK++  + D+ D S  
Sbjct: 243 GSFRMRAKVGIEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDLSDR 302

Query: 308 -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++        P+ ++E ++  + +E  F +N   L  G  PQ + L  +L  +L 
Sbjct: 303 KHGLRLIIGVKTGFSPEAVLEQLYRHTPLEEGFSINSVALVEGG-PQTLGLRELLSVYLG 361

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           HR  V+ RRS FR+     R+ +++GLL+A L+IDE I +IR+ D     +  ++  F L
Sbjct: 362 HRIRVVTRRSEFRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQVFDL 421

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +  Q D IL LRLR L +    ++++E D L AE  ++++LL S       ++ E+ +V 
Sbjct: 422 STLQADYILELRLRRLTRFSRIELEAERDQLRAEIAELEALLASRSLINALVSDELEQVA 481

Query: 484 EIFSKSTDLGRRRTTFCEV------SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
             F        RRT   E       +   KA   Q  +   P  V +S  G I  + + +
Sbjct: 482 ATFGTP-----RRTLLTEAKPSIASTSRGKAAAAQLEVADVPCRVFLSTTGRILRVDAGT 536

Query: 538 VDLSAL-------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR------ 584
              + L          + D++   L   +   I  ++  G+       +L +        
Sbjct: 537 EQDTGLDRIQPPVRRSKHDAILSRLDTTSHSEIGAVTNRGRLLRFSPVDLPAAPPNSIQL 596

Query: 585 GHGEAIQLLIDL-NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G G  +   + L +  + I+     DS   + + + +G    V   +  +        + 
Sbjct: 597 GAGVKVGDYLALADKKERILALVSLDSPKPIALGTRQGVVKRVAPGDWASKPEF--EIIG 654

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           + + +++         D +  V  + +LL F    +    R  G
Sbjct: 655 LKAGDEVVGAAHTEDTDELVFVASDSQLLRFPAASVRPQGRAAG 698


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/771 (29%), Positives = 388/771 (50%), Gaps = 54/771 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +  D VDF + ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL+ I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEEV  G        ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DPD +++ +   + +++ F   M  L  G+  Q+     +   +L
Sbjct: 300 DREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFS 422
            +R   L RR++  ++  + R+E+++GL+ A  ++  +IA+I+          S      
Sbjct: 359 DYRELTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE   ++ E + L A+++++  LL++  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQRLKLLLDNRDQLLDALTKELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F+       RRT   E      A           +              ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAANQRPNAELQRRQALDALPPDSRILIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           ++ +    +    LH  E    GD     ++ L      ++L ++  G+   +    AG 
Sbjct: 534 VKVISPQLMGR--LHLNEPTALGDEPSPARVILPIKPVAKLLAVTASGRVALIRWEFAGQ 591

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIA 633
                     +   +  +    ++     D+         L ++SS G    +   E++ 
Sbjct: 592 QPG--SLERFLPTALQGDPVVSVLQLPDADADSNKAAVSSLGLLSSDGRFKRLPMQELLD 649

Query: 634 NTRKGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKLLIFS--IDQIPEMSR-GKG-VR 688
            + +  + +K+    ++K  V+   G  ++++ +  ++L      D +P M +  +G V 
Sbjct: 650 LSGRAASVVKLKEGVELKTAVICREGGTLSLISDLGRVLPLPVTEDNLPLMGKLAQGPVT 709

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           ++      +   +     +    +  +     +  +     L +RG +G +
Sbjct: 710 MRLLPGETLIAAVATDPEQQDPLLLFSRHGRIKPLSLDTVRLCQRGNLGVI 760


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/695 (32%), Positives = 384/695 (55%), Gaps = 39/695 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +   + N+  V L  A+ E YL YA+   ++RA+PD+RDG KPVHRRI++    +     
Sbjct: 6   DIPTDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGAHLLKAYPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA 
Sbjct: 66  RPYYKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSIDGDSAAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +A  +L+ +D+D V+  + Y++ + EP V P+K+PNLL NG  GIAVG+AT
Sbjct: 126 RYTEARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVFGIAVGLAT 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  LA IDN +I+ ++L+ +I GPD PTGGI++  ++SI+ +Y  G G 
Sbjct: 186 NIPPHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILI-GKDSILSAYESGNGR 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDES 305
             +RA+  +E++  G   +V+TE P++  K+RL++ I+E+   K+    +  + DIRDES
Sbjct: 245 VTLRAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGIADIRDES 304

Query: 306 AEDVRIVLFPKNRSLDP---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                  +    +S+D    D +++ +   ++++   P NM  ++ G+ P+ M L  +L 
Sbjct: 305 DRTGIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGK-PETMGLRTMLW 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS 419
            ++ H++EV+ RR+   ++  +RR  I++G + A   +D+II  IR+          +++
Sbjct: 364 HYIEHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDASQNLIA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  TE Q  AIL L L  L  LE    + E   L     K+ ++L+S ++  N I  E+
Sbjct: 424 KFDFTELQATAILELMLYRLTGLEITAFEKEYKELSKLIRKLKNILDSERELLNVIKQEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
            E+K+ ++ +      R T       +       +I  E I + +SN G+I+ +   +  
Sbjct: 484 LEIKDKYADA------RRTQIIDDENEAKIDMDELIVVEDIVITLSNEGYIKRVPQKTYV 537

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQL 592
               +   + ++EGD  +  + ++T + IL+ + +G  Y      +   R    GE +  
Sbjct: 538 RSNSNPQDIEYREGDYNRFIISSNTLETILVFTDNGNMYQFKGNAIPELRWKEKGERLDT 597

Query: 593 LI---DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
           +I   +L+  + IVTA     +     +  +++KG       S+  A++      +K+  
Sbjct: 598 IIKGMNLDS-ERIVTALSIKDFSGPFNVQFITNKGIIKKTSLSKF-ASSYTKLMAIKLKE 655

Query: 647 EEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQ 677
           ++K+  V     +     V ++      L F++++
Sbjct: 656 DQKLVSVEIFDCEREERFVQILTSQG--LTFTVNE 688



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 67/490 (13%), Positives = 162/490 (33%), Gaps = 54/490 (11%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLS 333
            V K  L+E I +     R   + D  +E+    D  IV+     +L  +  ++ +   +
Sbjct: 477 NVIKQELLE-IKDKYADARRTQIIDDENEAKIDMDELIVVEDIVITLSNEGYIKRVPQKT 535

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS-------FRMQAIDRR 386
            + +           G   + +     L+  L         +            +  +R 
Sbjct: 536 YVRSNSNPQDIEYREGDYNRFIISSNTLETILVFTDNGNMYQFKGNAIPELRWKEKGERL 595

Query: 387 VEILKGLLIAYLNIDEIIAI-----------IRNEDKPKPVMVSRFSLTENQVDAILNLR 435
             I+KG+ +    I   ++I           I N+   K   +S+F+ +  ++ AI    
Sbjct: 596 DTIIKGMNLDSERIVTALSIKDFSGPFNVQFITNKGIIKKTSLSKFASSYTKLMAIKLKE 655

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            + L  +E +  + E        E+   +L S    +        E K   S     G  
Sbjct: 656 DQKLVSVEIFDCERE--------ERFVQILTSQGLTFTV-----NEPKLDDSDRMIQGTM 702

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
             T       +KA   +   E +   V ++++G ++              KE      A+
Sbjct: 703 LATIPAKDSIEKAEYIEIKPEIKRFRVELTSKGELKV---------GAKGKEN---SKAV 750

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTC 612
           +  +  R+++++++G    + +  L +       +    +++ +     I+    +    
Sbjct: 751 YTDSEARLIIITSEGNVLNIASNVLENVTEPFNIVNSFGEIDKSNKFIGIINVSDFKEDS 810

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKL 670
            ++  S +G        E        + +   +  +++     +    ++  +V +    
Sbjct: 811 YIIFFSKRGYVKKTSLKEYQGEYLCSQGYKLKNDSDELVGASLIKNEAENFVLVTQKGMA 870

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL-LG 728
           +  + + + EM +   GV   S KD     +    I +   +I    ++    + +L   
Sbjct: 871 IRVNCNDVNEMGKIASGVIGISLKDEDFV-IYGNTISDNDHYIKITTKNKEEKDYNLSDL 929

Query: 729 WLGKRGGVGS 738
            +  R   G 
Sbjct: 930 PIQNRATRGK 939


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/764 (27%), Positives = 378/764 (49%), Gaps = 59/764 (7%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + +    +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS++ L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVV-NKDDLHKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE++  G   +V+TEIPY        + +  +A LI  K+   + DI ++S+++ 
Sbjct: 244 RGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +    
Sbjct: 304 IRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADG-RPETLSLKQIIEYHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           E+  R+    +     + E+ +GL+ A   ID II I                     I+
Sbjct: 363 EITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGIK 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + K      ++   TE Q +AIL++RL  L  LE   +++E +  +        +L++ 
Sbjct: 423 FKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIALYKDILDNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  ++  +K+ +      GR+R T  E   A++A  ++  +E+  +  ++   G
Sbjct: 483 DSMAAVIIKDMDAIKKEY------GRKRRTAIE--NAEEAVYEEKKMEEMEVCFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           +++ +  ++ + +       +  K   +   TD+I + +  GK +T+ A ++  G  R  
Sbjct: 535 YMKLIDKNAYERNKEAVHNEN--KYVFNCMNTDKICIFTDTGKMHTIKAVDIPLGRFRDK 592

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  +  L + + +Q+    V       + +LL V+      +VE +E     R      K
Sbjct: 593 GTPVDNLSNYDSSQERMLYVAPVGQLRSDRLLFVTKTSMCKLVEGAEFDVAKRT-IASTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ E+++  +   +  + + +       L F   ++  M +   GVR     D    +  
Sbjct: 652 LADEDELIFIGSASEMEQIVLQSHGGCFLRFLAQEVSTMKKTALGVRGMKLADDDYLE-- 709

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVGSLV 740
                    ++ +  + Y  S +D         L KR   G   
Sbjct: 710 -------HAYLLAGHQEYTISYHDKEYALNKVRLAKRDTKGIKP 746


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 160/608 (26%), Positives = 294/608 (48%), Gaps = 28/608 (4%)

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            +PVV P++ P LL NG SGIAVGM T+IP HN+ EI      L++NP++S+ +L+  I 
Sbjct: 3   MKPVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAIT 62

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPTGGII+  R  I+ +Y+ G+G   VRA+  ++    G   I+++EIPY V K+ L
Sbjct: 63  GPDFPTGGIIM-GRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAEL 121

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           ++KIA+L   K +  +  I+DES +    +     R     +++ ++F  + +++ F +N
Sbjct: 122 VKKIADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVN 181

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           M  +  G    V+ L  IL+ +LAH+  ++ RR+ + ++  + R  I++GL IA  +IDE
Sbjct: 182 MVAIVDGSPH-VLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDE 240

Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           II IIR   N D  K  +++RF L + Q  AIL++RL  L  LE  +++ E  +LL + +
Sbjct: 241 IIKIIRGSKNSDIAKDQLITRFGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKID 300

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L   ++    I  E+ ++++ F        RRT   +      +   + +IEK+ 
Sbjct: 301 DYKDILAKPERVDQIIFNELLDIQKRFGDE-----RRTEISDSEI--ISIDDEDLIEKQN 353

Query: 520 ITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + + +++ G+I+ + +    +          +  +  D +   ++ +T D +L  +  GK
Sbjct: 354 VLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGK 413

Query: 572 AYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIV 626
            Y+  +  +        G  I  L+ L   + +         D+   L+ V+  G    +
Sbjct: 414 VYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDTNKYLMFVTKYGIVKRI 473

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-G 684
             SE     R G   L +   +++  V+   G    ++G      +IF+ +++  M R  
Sbjct: 474 SISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVA 533

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
            GVR    +      V    + +    +  + + Y +        +  RG +G       
Sbjct: 534 SGVRGIKLRANDYV-VGSSIVDDHSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVT 592

Query: 745 PRSGKFLS 752
            ++G  + 
Sbjct: 593 EKNGPLVG 600


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/773 (30%), Positives = 401/773 (51%), Gaps = 59/773 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+ +++   +L  + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+ NP++S  ++L+ I GPDFPTGG ++     + E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLG-SGVRETYLRGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        ++VTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L  GR  Q+  L  +L+ +L
Sbjct: 300 DREGMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVDGRPQQLT-LRQLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
            +R   + RR++  ++  + R+E+++GL  A  ++ ++IA+I+   +  K +  ++  F 
Sbjct: 359 DYRELTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLMVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L + LR L  LE+  ++ E D+L  E++++  LL +  Q  + +  E+R++
Sbjct: 419 LSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQRLTLLLENRDQLLDALIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F+       RRT   E      A    +      +              ++I + G 
Sbjct: 479 KKRFATP-----RRTRLVEGGDHLLAERAASQRPNAELQRRQALDALPSDSRLLIQDDGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSLKIALHAHTTD---RILLLSTDGKAYTLP---AGN 579
           ++ +    +    LH  +    GD    AL +       R+L ++  G+   +    AG 
Sbjct: 534 VKIVSPQLLGR--LHLNDPIPMGDEPSPALISLPIQPPPRLLAVTVSGRVALVRWEFAGQ 591

Query: 580 --------LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                   L +    G+ +  L+ L + +D+V     + T  L +++S G    +   +I
Sbjct: 592 QQGTLERFLPTAL-EGDEVVSLLPLPNPEDLVA----NETKSLGLLTSDGRFKRLPLKDI 646

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGV 687
              + +  T LK+     +K  +    G  VAV+ +  ++L    ++  +P M +  +G 
Sbjct: 647 QELSGRAATVLKLKEGVSLKAALICQDGADVAVISDIGRVLRLQAEETNLPVMGKLAQGP 706

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL-GWLGKRGGVGSL 739
                  G           E  T I  A ++      +L      KRG +G +
Sbjct: 707 ITMRLLPGEQLVTAIAGHAERPTTILLASQTGRLQWLELTCIRSCKRGDLGEI 759


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/769 (29%), Positives = 375/769 (48%), Gaps = 60/769 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L+   + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA  LI++P+ +++KL+E++ GPD PTG  ++   + +  +Y  GRG  R+R R
Sbjct: 201 LGEVVQAARWLINHPDATLDKLMEFVPGPDLPTG-GLLLGLDEVRRAYETGRGVVRMRGR 259

Query: 256 WCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAE-DVRI 311
             +   E  RG   I VTE+PY V   ++I  I   +   + +  + D++D +   +   
Sbjct: 260 VEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L  +LAHR EV
Sbjct: 320 LVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKELLDVFLAHRYEV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLLIA L+ID ++ +IR  +     K  ++ RF L+E Q 
Sbjct: 379 VTRRSAYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F  
Sbjct: 439 TYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGA 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEAR 553

Query: 545 FKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQ 591
            + G    D+++  +H+    R+LL+++ G+A+ +    L          S RG G +  
Sbjct: 554 RRSGRVKHDAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRG-GMSAA 612

Query: 592 LLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTF 641
            L+ L   + +V       + +    L + +  G   +      V   E           
Sbjct: 613 ELVPLEPGETVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPDWPVRSDEFE--------V 664

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
           + +   +++     +T   + +A V     LL F+   +     +G G+   +   G  +
Sbjct: 665 ISLRDGDEVIGATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARA 724

Query: 699 DVICFKICEGL-----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +         + S G +   +        G R   G    +
Sbjct: 725 VFFGAIRTDDSKHGEPMVVTSTGATVKVTPFKAYPAKG-RATGGVRAQR 772


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/795 (29%), Positives = 362/795 (45%), Gaps = 102/795 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM Q A  +   + ED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARMAQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P+ ++E L+ Y+ GPD+P+GG+IV  R  I E+Y  GRG    
Sbjct: 196 THNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIV-GRSGIREAYESGRGALTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +   
Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +LK W+ HRR V
Sbjct: 315 LVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPH-TMGLKEMLKVWVDHRRVV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR +    R+ +++GLL+A ++IDE+I +IR+ D     K  +++ F L + Q 
Sbjct: 374 IRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIAVFDLDDIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L    E+++ +L S +     +  E+ E    +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASDEALDGVVIDEMDEAVAAYGT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   +                                               
Sbjct: 494 P-----RRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTAATVSSAAADVAAAAKAAK 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKIAL 555
               D AT     I+ EP  V++S  G I      +V+       S    K+ D +    
Sbjct: 549 KAGEDNATATALQIDDEPCAVMLSATGLIARTHEDAVERWENRSGSDARTKD-DQIVSIF 607

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDI 602
              T     L+++ G+        L +    G               +    D    + +
Sbjct: 608 RTTTRSSYGLITSAGRLVLAHVVELPAVAPDGPLNVSGGVKAEELLGMTENTDPIRGERV 667

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK---------------TFLKVSSE 647
           + A    S          G+    E + +   TR G                + + +   
Sbjct: 668 IAAIAMPSVDD---AGKDGDG--AEPAPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDG 722

Query: 648 EKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +++    +   GD +  V  +  LL F    +    R   G+       G          
Sbjct: 723 DEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLATGCSVAAFAVVP 782

Query: 706 CEGLTWI-DSAGRSY 719
            E + W  D      
Sbjct: 783 TEKVAWTYDEGENGL 797


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/759 (27%), Positives = 368/759 (48%), Gaps = 49/759 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENV        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + +    +D++ VDF   ++E + EP V P + PN+L NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + +  IS+  L+ YI GPDFPTGGI+V +++ + + Y  G G  R+
Sbjct: 185 PHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVV-NKDDLRKIYETGSGKIRL 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R +  VE++  G   +V+TEIPY        + +  +A L+  K+   + DI ++S+++ 
Sbjct: 244 RGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +    
Sbjct: 304 IRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADG-RPETLSLKQIIEYHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           E+  R+    +     + E+ +GL+ A   ID II I                     I+
Sbjct: 363 EITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGIK 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + K      ++   TE Q +AIL++RL  L  LE   +++E    +        +L + 
Sbjct: 423 FKSKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEYQETMKNIALYKDILENY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  ++  +K+ +      GR+R T  E   A++A  ++  +E+  +  ++   G
Sbjct: 483 DSMAAVIIKDMDAIKKEY------GRKRRTAVE--NAEEAVYEEKKMEEMKVCFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
           +++ +  ++ + +          K   +   TD+I + +  GK +T+ A ++     R  
Sbjct: 535 YMKLIDQNAYERNKEAIHNES--KYVFNCMNTDKICIFTDKGKMHTIKAADIPLVRFRDK 592

Query: 587 GEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G     L + N  ++    V       T +LL V+      +VE +E     R      K
Sbjct: 593 GTPADNLSNYNSAEEQMLYVAPVGQIRTDRLLFVTKSSMCKLVEGAEFDVAKRT-IASTK 651

Query: 644 VSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVI 701
           ++ ++++  +      + + +       L F   +I  M +   GVR     D    +  
Sbjct: 652 LAEDDELIFIGGSAEMEQIVLQSHGGCFLRFLKQEISIMKKTAIGVRGMKLADDDYLEHA 711

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                     I    + Y+ ++  L     KR   G   
Sbjct: 712 YLLAGHQEYTITYHDKEYSLNKVHL----AKRDTKGVKP 746


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/760 (28%), Positives = 376/760 (49%), Gaps = 55/760 (7%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++K
Sbjct: 7   EQIIETEYSDVMQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+ +GK HPHGD S+YD+LV ++Q F +  PL+ G GNFG+I+GD AAA RYTEA
Sbjct: 67  SARIVGDTMGKYHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSIEGDGAAAMRYTEA 126

Query: 135 RMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R++Q+A+   L  +D+D VDF   ++E + EP V P + PNLL NG  GIAVGMATSIP 
Sbjct: 127 RLSQIAQEAYLADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGADGIAVGMATSIPQ 186

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  +A + NPEI+  +++EYI GPDFPTGGI V +R+ ++  Y  G G  ++R
Sbjct: 187 HNLGEVIDGVIAYMKNPEINTRQMMEYIPGPDFPTGGI-VTNRDELLAIYSTGAGKIKIR 245

Query: 254 ARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +  +E++  G   IVV+EIPY        + +     L+ +K+   + DI + S++D  
Sbjct: 246 GKASIEKIKGGREAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDIVDISNMSSKDGI 305

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  D   ++  ++  + +E  F +NM        P+ M +  I++  +  + E
Sbjct: 306 RIVIELKRGADAQNVLNLLYRKTRLEDTFGVNMLA-VAEGKPETMGIVPIIRHHVNFQYE 364

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-------- 422
           +  R+ +  ++    + EI +GL+ A   ID II I+R     K                
Sbjct: 365 LATRKYTNLLKKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARACLVDGITEGIRF 424

Query: 423 -------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                         T+ Q DAIL +R+  L  LE  Q++++ +  +   ++   +L    
Sbjct: 425 KSEQSEKDARLLHFTQRQADAILQMRMYRLIGLEIEQLRADYEKTMQNIQEDMDILEHRA 484

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
                I  +++E+K+ F+      R+R T  +     +A +++  IE++ + V++   G+
Sbjct: 485 SMARVIIRDLKEIKKTFA------RKRRTLID--NVAEAVIEEKPIEEQEMVVLMDRFGY 536

Query: 530 IRSLKSHSVDL-SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGH 586
           ++++     D       KE    K  +H    DR+ + S+ G+ + +   ++  G  R  
Sbjct: 537 VKAIDLSVYDRNQEAADKEN---KYVIHCSNLDRLAVFSSTGQLHLIKVLDMPGGKFRDK 593

Query: 587 GEAIQLLIDLNH-NQDIV--TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  I  L   +   + I+   A       K+   +  G    V+ +E    +R      K
Sbjct: 594 GTPIDNLSKFDSARERILFAEALGAVKESKVFFGTRAGYIKQVDGAEFD-VSRYSSIASK 652

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDV 700
           +   +++  V  + G + + +  ++   L   +  IPE  +   GV      +   +S +
Sbjct: 653 LGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPEKKKAAVGVIGIKLGRADRVSQM 712

Query: 701 ICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                 E GLT + +     NR        +G R   G  
Sbjct: 713 YLLTDQEGGLTSLHNKKVVLNR------LHIGSRATKGVK 746


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/777 (29%), Positives = 378/777 (48%), Gaps = 46/777 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + L     E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G        +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P+ ++  +   + +++ F   +  L  G+ PQ + L  +L+ +L
Sbjct: 300 DREGMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQ-PQQLSLRKLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---S 422
            +R   + RR++  +     R+E+++GL+ A   +  +IA+I+                 
Sbjct: 359 EYRELTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R++
Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQLQFLLENRESMLEVLIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI-----TVVISNRGWIRSLKSHS 537
           K+ F+       RRT   E      A           +        + + G I   +   
Sbjct: 479 KKRFNNP-----RRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQ 533

Query: 538 VDLSALHF----------KEGDSL---KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           V + +             K GD     ++ L      R+L ++ +G+   +      +G+
Sbjct: 534 VKVMSPQILGRLHLNEACKLGDGPSPARLILPIEPAPRLLAVTNNGRVALVR-WEF-AGQ 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G   + L      + ++  F    D    L ++SS G    +   E++  + +  T +
Sbjct: 592 QPGSLERFLPGGLEKETLINIFPLPVDQNLSLGLLSSDGRFKRLPLEEVMELSGRAATIV 651

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKG-VRLQSYKDGGI 697
           K+     +K        D V +     +++  ++  D +P M +  +G + ++   +  +
Sbjct: 652 KLKDGVVLKSAFICKANDDVILASSIGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMV 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL--VPKGFPRS-GKFL 751
              I        T +                 + +RG +G +    K   R   + +
Sbjct: 712 VGAISCPPNCESTVLLVTRLGKFAKLLVSSIRVCQRGDLGEIGLTIKDSSRDQDRVV 768


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 200/471 (42%), Positives = 311/471 (66%), Gaps = 6/471 (1%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              + N+  +++   ++  ++ YA+S I  RA+PD RDG KPVHRRI++AM+++G+    
Sbjct: 3   EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA R
Sbjct: 63  AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+M++++  +++ +++D +DF+D Y+  + EPVV P++FPNLL NGTSGIAVGMAT+
Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP H + E+ +  LAL +N EI I +L+EYI GPDFPTG  I+  R  I  +Y+ GRG  
Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEIL-GRSGIRRAYQTGRGSI 241

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA+  +E+   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES     
Sbjct: 242 TLRAKTEIED-HNGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGM 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R  + ++L+ ++   + +++ F +N+  L  G  P+V+ L   L+E+L H+  
Sbjct: 301 RIVIEVRRDANANVLLNNLHKQTALQSSFGINLLALV-GGRPKVLNLKECLEEYLDHQIV 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V  RR++F ++  + R  IL+GL IA  ++DE+I++IR        +  ++ RF L+ +Q
Sbjct: 360 VTRRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMERFELSYDQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             AIL++RL+ L  LE  +I+ E + L     ++  +L +  +    I  E
Sbjct: 420 SQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKEILENEYKGLEIIREE 470


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/498 (41%), Positives = 308/498 (61%), Gaps = 13/498 (2%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            +++ ++ Y++S I  RA+PD+RDG KPVHRRI++AM+E G+      KKSA  VGEVIG
Sbjct: 77  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 136

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VY+++VRLAQ F  R PLI G GNFGNIDGD AAA RYTE+R+ + A  +L
Sbjct: 137 KYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 196

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VD++  Y+E  +EPV  P++FPNLL NG+ GIAVGMAT+I  HN+ E  EA  
Sbjct: 197 RDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATC 256

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
            LIDNP+ ++++L++ + GPDFPTG II+ S   I +SY  GRG   VRA+  VE    G
Sbjct: 257 YLIDNPDATVDELMQIMPGPDFPTGAIIMGS-AGIKQSYETGRGSITVRAKAHVESTKTG 315

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +V TEIPY V K  L EKIA+L+  KRI  + D+RDES +    ++    + + P +
Sbjct: 316 RSRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELKKGVIPQV 375

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F  N   L  G VP+ + L  +L+ ++ H+ +V+ RR+ F ++   
Sbjct: 376 VLNNLYKYTSLQTTFGANNLALVNG-VPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQ 434

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+G L+A  +IDE+I+IIR+     +    ++ RF  T  Q  AIL ++LR L  
Sbjct: 435 ARAHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIERFGFTPEQTTAILEMKLRRLTG 494

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           LE  +I+ ELD L       + LL   ++    I  E+RE+ + F        RRT   E
Sbjct: 495 LERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREISKKFGDK-----RRT---E 546

Query: 502 VSRADKATLQQAMIEKEP 519
           +S+ +K    + +I  E 
Sbjct: 547 ISQVEKDLDVEDLIADEE 564


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 242/785 (30%), Positives = 395/785 (50%), Gaps = 64/785 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L+ + +D VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    R  +PD +++ +   + +++ F   +  L  G+  Q+     +   +L
Sbjct: 300 DRDGMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            +R   L RR+S  ++  + R+E+++GL+ A  N+  +IA+I+        +  ++ R  
Sbjct: 359 DYRELTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E+DNL  E+E++  LL +  Q  + +  E++ +
Sbjct: 419 LNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERERLKLLLENRDQLLDAMVGELKTL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ FS       RRT   E   A  A    +      +              ++I   G 
Sbjct: 479 KKRFSTP-----RRTRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLIQADGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           ++ +    +    LHF +     D+    ++ L      R+L +S +G+   +    AG 
Sbjct: 534 VKIVTPQVLGR--LHFGDPCPLSDAPSPAQVILPIEPPPRLLAISANGRVALVRWEFAGQ 591

Query: 580 --------LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                   L SG   GE I  L  L   +    +    S+              +  +E+
Sbjct: 592 QPGVLERFLPSGL-EGEPIVALAPLPMQESSDLSLGLLSSDGRF--------KRLPLAEV 642

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGV 687
           +  + +  + +K+    ++K  V     H + +V +  ++L   I++  +P M R  +G 
Sbjct: 643 LDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINEDVLPLMGRLAQG- 701

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              + +      +I        T +  +G+      +       +RG +GS+  +    +
Sbjct: 702 -PMTMRLLPGEQLIGALCPLEPTVVLVSGQGQFARIDLSSIRSSQRGDLGSMAIQITSDT 760

Query: 748 GKFLS 752
            +   
Sbjct: 761 DRITG 765



 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 9/156 (5%)

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +   LP   +L   G   ++   + L     +  A +      L++VS  G    +  +E
Sbjct: 633 RFKRLPLAEVLDLSGRATSV---VKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINE 689

Query: 631 ----IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK- 685
               ++    +G   +++   E++   +      V +V    +     +  I    RG  
Sbjct: 690 DVLPLMGRLAQGPMTMRLLPGEQLIGALCPLEPTVVLVSGQGQFARIDLSSIRSSQRGDL 749

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           G             +       GL  I S  + + R
Sbjct: 750 GSMAIQI-TSDTDRITGMTEANGLIGIVSTEQRHGR 784



 Score = 44.0 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 12/144 (8%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN----LLSGRGHGE 588
           L       S +  K+G  LK A+       ++L+S  G+   LP       L+     G 
Sbjct: 643 LDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINEDVLPLMGRLAQGP 702

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---S 645
               L+     + ++ A        +++VS +G    ++ S I ++ R     + +   S
Sbjct: 703 MTMRLLP---GEQLIGALC-PLEPTVVLVSGQGQFARIDLSSIRSSQRGDLGSMAIQITS 758

Query: 646 SEEKMKLVVKVTGDHVAVVGENRK 669
             +++  + +  G  + +V   ++
Sbjct: 759 DTDRITGMTEANG-LIGIVSTEQR 781


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/810 (28%), Positives = 383/810 (47%), Gaps = 91/810 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P++FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYEN 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------MIEKEPITVVISN 526
                S       RRT   E   +  A  + A                +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGW-IRSLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            G  IR   +  V  L   +     ++  ++  HT     ++++ G    L   +L  G 
Sbjct: 530 DGRAIRLTHTGPVTRLEGFNS----TIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGE 585

Query: 585 -------------------------------------GHGEAIQLLIDLNHNQDIVTAFV 607
                                                     +     L   + +V    
Sbjct: 586 KSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILT 645

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
            D    + +++++G    +       +T+   + + +   +++        D  + ++  
Sbjct: 646 LDEDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMIST 703

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKD--GGISDVICFKICEGLTWID---------- 713
           + +LL    +++    R   GV   S K+    I+  I        T +           
Sbjct: 704 DAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDELVAATTVATVSAIMNAMP 763

Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +   S   +  D     G RG  G  V +
Sbjct: 764 GANQSSIKLTPLDRYPVKG-RGAQGVRVQR 792



 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 77/214 (35%), Gaps = 27/214 (12%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +A   ++G+++   L     + + +++  G    +   +  S +        +I+L    
Sbjct: 630 AAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRP-DYPSTQDR----FSIINLEGTD 684

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            ++ A       +++++S+         +++    R   G   + +    ++     V  
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPD 744

Query: 659 DHVAVVG--------------ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           + VA                     + +  +D+ P   RG  GVR+Q +  G  +  + F
Sbjct: 745 ELVAATTVATVSAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  ID+ G+     E D      +R G G
Sbjct: 805 VGPDPIHAIDAHGQPVKLPELDE-----RRDGSG 833


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/760 (28%), Positives = 372/760 (48%), Gaps = 49/760 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++ +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   +
Sbjct: 4   TQQQIIRTEYSEIMQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 63

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y++LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 64  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYT 123

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +V +   L  +D++ V F   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 124 EARLQKVTQEAFLADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVTSI 183

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A I N  I+ E+L++YI GPDFPTGGI+V +++ + + Y+ G G  R
Sbjct: 184 PPHNLGEVIDAVIATIKNSNITTEELMQYIQGPDFPTGGIVV-NKDELTDIYKTGMGKIR 242

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  VE+   G   +V++EIPY        + +  +A L+  K+   + DI ++S++D
Sbjct: 243 IRGKVDVEKGKNGKESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSKD 302

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    ++ D + L+  ++  + +E  F +NM  +S G  P+ + L  I++  +  +
Sbjct: 303 GIRIVLELRKNADTNNLINMLYKKTRLEDTFSVNMLAVSDG-RPETLGLKKIIEHHIDFQ 361

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKP---------- 415
            EV  R+    ++    + EI +GL+ A   ID II I+R     ++ K           
Sbjct: 362 FEVNTRKYQTLLEKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEGI 421

Query: 416 --------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       +   T+ Q  AIL +RL  L  LE   ++ E D  +    + + LLN+
Sbjct: 422 RFKSRTSKKQAEQLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIARYEDLLNN 481

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                 QI  E++ +K+ ++        R T  E    ++A  ++  +E+  +  ++   
Sbjct: 482 YGSMAKQIIKELQSLKKEYAVP------RKTVVE--NGEEAVYEEKKLEEMEVVFLMDRF 533

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ R++ + + + +          +  +    TD+I L +  G  + +   ++  G  R 
Sbjct: 534 GYARTVDAQTYERNKET--ADAESRYVIPCMNTDKICLFTDTGSQHLIRVLDVPFGKFRD 591

Query: 586 HGEAIQLLIDLNH-NQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G+ I    + +   + IV             +  +++G    VE SE     R      
Sbjct: 592 KGKPIDNFCNYSSAREAIVYVESLQRVKMSLFVFGTAQGMVKQVEGSEFDVAKRT-IAAT 650

Query: 643 KVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
           K+   +++  V ++     AV   E+   L   I  IP   +G  GVR     +G   + 
Sbjct: 651 KLQEGDRLISVHRMDEAETAVFKTEHDICLRIRIGDIPLKKKGAIGVRGIRLGEGDRVEA 710

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +   E    I    +            +  R   G+ +
Sbjct: 711 MYYPDGEKDKTILYKEKEIRL----DRLKVAGRDTKGTKL 746


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/777 (28%), Positives = 380/777 (48%), Gaps = 46/777 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE ++ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAEERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  R+P++ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A + L     E+ VDF   ++    EP V P++ P LL NG SGIAVGMATS
Sbjct: 121 TETRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +ALI  P++S +KLL  I GPDFPTGG I+     I E+Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    VEE+  G        +VVTE+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P+ ++  +   + +++ F   +  L  G+ PQ + L  +L+ +L
Sbjct: 300 DREGMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQ-PQQLSLRKLLQTFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---S 422
            +R   + RR++  ++    R+E+++GL+ A   +  +IA+I+                 
Sbjct: 359 EYRELTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q DA+L + LR L  LE+  ++ E   L  ++E++  LL + +     +  E+R++
Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F+       RRT   E      A           +              ++I     
Sbjct: 479 KKRFNNP-----RRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQ 533

Query: 530 IRSLKSHSVDL----SALHFKEGDSL-KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
           ++ +    +       A    +G S  ++ L      R+L ++ +G+   +      +G+
Sbjct: 534 VKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVTNNGRVALVR-WEF-AGQ 591

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
             G   + L      + ++  F    D    L ++SS G    +   E++  + +  T +
Sbjct: 592 QPGSLERFLPGGLEKETLINIFPLPVDQNLSLGLLSSDGRFKRLPIEEVMELSGRAATIV 651

Query: 643 KVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI--DQIPEMSR-GKG-VRLQSYKDGGI 697
           K+     +K        D V +     +++  ++  D +P M +  +G + ++   +  +
Sbjct: 652 KLKDGVILKSAFICKANDDVILASNIGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMV 711

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL--VPKGFPRS-GKFL 751
              +        T + +               + +RG +G +    K   R   + +
Sbjct: 712 VGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRGDLGEIGLTIKDSSRDQDRVV 768



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 524 ISNRGWIRSLKSHSV-DLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S+ G  + L    V +LS      +  K+G  LK A      D ++L S  G+   +  
Sbjct: 626 LSSDGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRINV 685

Query: 578 GN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI 631
            N    L+     G     L+     + +V A      C+  +L+ +  G    +  S I
Sbjct: 686 NNDSMPLMGKLAQGPMTMRLLP---EEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSI 742

Query: 632 IANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVA-VVGENRK 669
               R   G+  L +     ++ ++V    G+ +  +V    +
Sbjct: 743 RICQRGDLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGR 785


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 216/761 (28%), Positives = 368/761 (48%), Gaps = 53/761 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           ++N+        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++
Sbjct: 5   QDNIIRTDYAEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+ +GK HPHGD S+YD+LV +AQ F +   L+ G GNFG+I+GD AAA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 134 ARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           AR+ ++ + +  + +D++ VDF   ++E + EPVV P + PNLL NG  GIAVGMATSIP
Sbjct: 125 ARLEKLTQEVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIP 184

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A + N +IS   L+ Y+ GPDFPTGGI+V +++ +V+ Y  G G  R+
Sbjct: 185 PHNLGEVVDAVKAYMKNNDISTRGLMRYLKGPDFPTGGIVV-NKDDLVKIYESGTGKLRI 243

Query: 253 RARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           R R  +E++  G   +V+TEIPY        + +  IA L+  K+   + DI ++S+++ 
Sbjct: 244 RGRVEIEKLKGGRQQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSKEG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  D + L   ++  + +E  F +NM  ++ G  P+ + L  I+   +    
Sbjct: 304 IRIVLELKRDADVENLTNMLYKKTRLEDTFGVNMLAVADG-RPETLGLKQIIAHHVDFVF 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           EV  R+ +  +     + EI +GL+ A   ID II I                     I+
Sbjct: 363 EVNSRKYTTLLAKEQEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCLTDGITEGIK 422

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + K           TE Q  AIL++RL  L  LE   +  E +  +      + +LN+ 
Sbjct: 423 FKTKTSEKAAKTLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIAAYEDILNNY 482

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I  E+ ++K+ +      G +R T  E   A++A  ++  +E+  +  ++   G
Sbjct: 483 DSMAAVIMGELDQIKKEY------GSKRKTSIE--NAEEAVYEEKKMEETEVCFLMDRFG 534

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
           ++R +  ++ + +          +       TD+I + +  GK +T+ A ++     R  
Sbjct: 535 YMRLIDKNAYERNKDAAHAES--RYVFTCMNTDKICIFTDTGKLHTVKAEDIPLVRFRDK 592

Query: 587 GEAIQLLIDLNH-NQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G     L + +  ++ I+        +   +L V+  G   +V+  E  A+ R      K
Sbjct: 593 GVPADNLGNYDSTSEQILYVAPLSQVAASTVLFVTENGMCKLVKGDEFRASKRT-IVSTK 651

Query: 644 VSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDV 700
           ++ ++++  V      D V    E    L     +I    +   GVR      +  I   
Sbjct: 652 LAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISVTKKNAMGVRGMKLTGEDRIHHA 711

Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGSLV 740
              +  +          +Y+     L    L KR   G   
Sbjct: 712 YLLESRQEYAI------TYHDKPYVLNKVKLAKRDTKGVKP 746


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 209/761 (27%), Positives = 364/761 (47%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++E +        +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+ + +   +
Sbjct: 1   MQEQIIRTDYAEVMQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDMYELAIRYDKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+YD+LV +AQ F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +V + +    +D+D VDF   ++E + EP V P + PN L NG+ GIAVGM TS 
Sbjct: 121 EARLQKVTQEVFLADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGSDGIAVGMVTST 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A + N +++   L++YI GPDFPTGGI V +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVIDAVKAYMKNDKLTTADLMQYIQGPDFPTGGI-VTNKDELLNIYETGSGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R R  VE+   G   +V+TEIPY        + +  +  L+ +K+   + DI ++S+++
Sbjct: 240 LRGRVEVEQDKGGKLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDIIDISNQSSKE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D D L+  ++  + +E  F +NM  ++ G  P+ + L  I++ +L  +
Sbjct: 300 GIRIVLELKKQTDVDNLLALLYKKTRLEDTFSVNMLAIADG-RPETLGLKSIIEYFLDFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAY-------------LNIDEIIAI--------I 407
            ++  R+    +     + EI +GL+ A               NI +  A         I
Sbjct: 359 YDLTTRKYQKLLAKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKACLMTGTTEGI 418

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
           R + K      S    TE Q  AIL +RL  L  LE   +  + D  L        +L +
Sbjct: 419 RFKSKASERAASALDFTERQATAILEMRLYKLIGLEMDALLKDHDATLKNIASYKDILEN 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            K     I+ ++  +K+ ++        R T  E  R   A  ++   E   +  +I   
Sbjct: 479 HKSMSRVISHDLDMIKKTYATP------RKTSIENVR--AAVYEEKKAEAMEVVALIDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ +++   + + +       +  K  +    TD+  + +  G+ + +   ++  G  R 
Sbjct: 531 GYAKTIDKATFERNKEAALSEN--KYVIDCMNTDKACIFTDTGRLHLIKITDMPFGRFRD 588

Query: 586 HGEAIQLLIDLN-HNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
               +  L + +   ++I+      S     LL V+  G   +V+ SE    +++     
Sbjct: 589 KSIPLDNLGNYDSSGENIIHICSLASIHDAMLLFVTKTGMLKLVKGSEFD-VSKRTVAAT 647

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISD 699
           K++  + +  +      + + +  EN   + F +  IPEM +   GVR  S   G  +  
Sbjct: 648 KLADGDNIITICIADNFNQLVLQTENGYFIRFPMMNIPEMKKTAIGVRGISLGSGDSVKA 707

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                  +  T I +           +      RGG G+ V
Sbjct: 708 AYPLDSSQECTIIHNEKELLLNKLKLV-----NRGGKGTKV 743


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/697 (31%), Positives = 365/697 (52%), Gaps = 39/697 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++   ++   
Sbjct: 5   NVNIPKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAA
Sbjct: 65  PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T  A  +L+ +D+D VD  + Y++ + EP V P++FPNLL NG  GIAVG+
Sbjct: 125 AMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E  +  +A I+N  IS ++L+ YI GPD PTGGI++   ++++ +Y  G 
Sbjct: 185 ATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++    + IV+ E PY+  KS++++ I+E+   K+    +  + DIRD
Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSIYDIRD 303

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S D    + +++ +F  ++++     NM  +     P+ + L  I
Sbjct: 304 ESDRNGIRAVIELKKSADMEEAERVLKYLFKKTELQCNLSFNMVAI-AEGKPKTLGLKSI 362

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVM 417
           LK ++ H+++V+ RR+   ++   +R  I++G + A   +DEI+  IR     K     +
Sbjct: 363 LKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENL 422

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           V +F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+ +  I  
Sbjct: 423 VGKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYRELQRRINALTKILNSEKELFKVIKK 482

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RS 532
           E+ EVKE +      G  R T             + +I  E + + +SN G+I     + 
Sbjct: 483 ELNEVKENY------GDERRTNIIHDDEKAKIDIEDIIVDENVVITVSNDGYIKRVSEKY 536

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA--- 589
            K  +  +  + ++EGD  K  L  +T D +++ +  G  Y L   N+   +   +    
Sbjct: 537 YKRINPKIEDIEYREGDFNKFILEGNTKDNLIMFTDAGNLYQLRIVNIPEMKWKEKGKRL 596

Query: 590 --IQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             +   +DL   +  +  +V D           +++G        +   N  K    LK+
Sbjct: 597 DELIKTLDLEK-EKFIEFYVIDELNSNKNFFFFTNRGMIKKTSLDKFKTNYSK-LLALKL 654

Query: 645 SSEEKMKLVVK----VTGDHVAVVGENRKLLIFSIDQ 677
              EK+  V          ++ +  +N   L F++ +
Sbjct: 655 KENEKLIDVKLNYNNRKEQYIKIQSKNG--LEFTVSE 689



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 106/324 (32%), Gaps = 24/324 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           ++K    + K+    LLA K K +  L   K  +N    +  +++        +   R  
Sbjct: 634 IKKTSLDKFKTNYSKLLALKLKENEKLIDVKLNYNNRKEQYIKIQSKNGLEFTVSEPRIE 693

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA--LH 556
             + +            + E   +  ++   I++   +      +   +  + K     +
Sbjct: 694 NNDRNVMGNQI-FNLSSQDEVKNICYTDEFNIKNFAVNINSKGKIKISKKINYKNFKGCY 752

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVTAFV---YDST 611
           A++   I++    G  +  PA  + +       +  LID    + +DI++ F    +D  
Sbjct: 753 ANSLSNIVIFGNKGNVFLFPAYLIENIDNGLIKLSNLIDEFNENEEDIISIFSISEFDDK 812

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
                +S +G       SE        K +   + ++K+  V+         + ++ +  
Sbjct: 813 SSFYFISEEGYVKKTMLSEFNGMYSYTKGYKLKNKDDKLINVLLNDNTFKTDILLITKKD 872

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSE--- 723
             + F  + I  M +   GV   S  +D  +         + +  I   G   N+ E   
Sbjct: 873 MRIRFESNSINPMGKIASGVTGISLNEDDKVIFGEFIYQEDNIDKIKICGEIKNKLEVSY 932

Query: 724 --NDLLGWL------GKRGGVGSL 739
             N     +        R G G  
Sbjct: 933 DDNSEEVVILKDINNQNRAGKGKK 956


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/750 (29%), Positives = 365/750 (48%), Gaps = 78/750 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------MIEKEPITVVISN 526
                S       RRT   E   +  A  + A                +   P  +V+  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGTMTVSDVPLEVPDAPCRIVLGA 529

Query: 527 RGW-IRSLKSHSVDL-SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            G  IR   +  V+     +     ++  ++  HT     ++++ G    L   +L  G 
Sbjct: 530 DGRAIRLANTGPVNRLEGFNS----TIAGSILTHTRGCFGVVTSSGFVVRLDVLSLPPGE 585

Query: 585 --------------------------------------GHGEAIQLLIDLNHNQDIVTAF 606
                                                      +         + +V   
Sbjct: 586 KSSLADSAAGASSAAAAGSTETADIELNLSESAPPWSFDGAPQLSAAARFEDGETVVGIL 645

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    + ++++ G    +       +T+   + + +   +++        D  + ++ 
Sbjct: 646 TLDEDETVGMMTAHGIVKRMRPD--YPSTQDRFSIINLDGTDQLIYAGACPDDAQIVMIS 703

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
            + +LL    +++    R   GV   S K+
Sbjct: 704 TDAQLLRTPANKVRPQGRNAGGVAGMSLKE 733



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 27/214 (12%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +A  F++G+++   L     + + +++  G    +   +  S +        +I+L+   
Sbjct: 631 AAARFEDGETVVGILTLDEDETVGMMTAHGIVKRMRP-DYPSTQDR----FSIINLDGTD 685

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            ++ A       +++++S+         +++    R   G   + +    ++     V  
Sbjct: 686 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPD 745

Query: 659 D-------------HVAVVGENRKLL-IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           D               A+ G N+  + +  +D+ P   RG  GVR+Q +  G  +  + F
Sbjct: 746 DLVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAF 805

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  ID+ G+     E D      +R G G
Sbjct: 806 VGPDPIHAIDAHGKPVKLPELDE-----RRDGSG 834


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 216/670 (32%), Positives = 364/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+    LA IDN EI I++L+EYI GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   ++    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+    K        +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +      G  R T             + +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKY------GDERKTHIIEDDTKSKIDVEELIIVEEVMITLSKEGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-- 594
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+     +  GE +  +I  
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 595 -DLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
            +L   +  ++++   ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEEEKIVEVISVDSFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 45/338 (13%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI----ACEIR---EVKEIF 486
           ++  SL K E    K +   L  +   ++  L   ++  + +      E+    EV E+ 
Sbjct: 634 IKESSLDKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLELEFTIEVPELE 693

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +   ++   +     +        +    E     + I+++  ++  K+  VD++     
Sbjct: 694 NVPRNILPIQLFNLSIDDEIVEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKI- 752

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTA 605
                      +++  +LL S  G  Y +P   L +       +++   DL   + I+  
Sbjct: 753 -----------NSSKTLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGDLEKKEKIIRI 801

Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659
                YD    L   S KG       +E   +T+K + F K+ +E+   + V +      
Sbjct: 802 SSISSYDDDLALYSFSKKGLVKKTLLNEFSVDTQK-QFFYKLKTEDDEVISVDINNITLG 860

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---------------DVICF 703
           ++ ++ +    + F ++ +  M +   GV   S ++                    VI  
Sbjct: 861 NLVIITKKGMAIRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSKYLEVNGNTVIIS 920

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
              + ++    A    N +  D+   L  R G G+ V 
Sbjct: 921 PRSQEISLTSKANDKVNITVEDIK--LQNRAGRGTNVM 956


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/772 (29%), Positives = 384/772 (49%), Gaps = 64/772 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    
Sbjct: 1   MSEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ +   L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSI
Sbjct: 121 EARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +    I+ E+L+EYI GPDFPTGG+++ +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVVDAVKAYMRKESITNEELMEYIKGPDFPTGGLVI-NKKDLLNIYSSGTGKLK 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V++EIPY       S+ +     LI  K    + DI +ES+
Sbjct: 240 LRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           +D   ++    +  D + L   ++  + +E  F +NM  +  G  P+ + L GI++    
Sbjct: 300 KDGIRIVLELRKGADVERLKNLLYKKTKLEDTFGVNMLAIVDG-RPETLDLKGIIENHTQ 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------- 419
              EV  R+    +  +  + EI +GL+ A   ID II IIR     K V          
Sbjct: 359 FYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVKACLTKGDVG 418

Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                         + S T+ Q  AIL+L+L  L  LE   +K E + +LA+ E+ + +L
Sbjct: 419 NINFKSSDSMIEATKLSFTDKQASAILDLKLYRLIGLEILMLKEEYEEILAKIEEYEDIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           N+ K   N I  E+ ++K+ F      GR R T  E     +A    A +++E +  V+ 
Sbjct: 479 NNEKSLKNVIRKELDKIKKEF------GRERRTVVE--DGKEAVYVAAPVKEETVYFVMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
             G+ +++   +   +  +  +    K  +    TD+I + +  G  + +   ++ +G  
Sbjct: 531 RFGYSKTMDKATYQRNKENILKE--YKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKF 588

Query: 584 RGHGEAIQLLIDLNH-NQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           R  G  I  L + +   + I+     +S     LL  ++K    +++  E++   ++   
Sbjct: 589 RDKGVPIDNLCNYDSTKEYIIQVLDAESMIHSSLLFATAKSMLKVMD-GELLNAAKRTVQ 647

Query: 641 FLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-K 693
             K+S  +++  V+ +       D V +  +    L F + +IP+  +   GVR     K
Sbjct: 648 ATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSK 706

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG---WLGKRGGVGSLVPK 742
           D  ++++         + +          E +L      L KR   G+ V +
Sbjct: 707 DDSLTNIYVMAAQNISSIVY--------KEKELEFHRLKLSKRDSKGTKVRR 750


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/687 (32%), Positives = 379/687 (55%), Gaps = 32/687 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT+  E     K    + +I +E + + +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTSIIEDDEKAK-IDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIMEAFSIEAFTAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMALKLKKGESLVK 660

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQ 677
              V  T +      + +K L F+I++
Sbjct: 661 ADLVDRTREEKFFNIKTQKGLSFNIEE 687



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/490 (12%), Positives = 149/490 (30%), Gaps = 44/490 (8%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR---SLDPDLLMESIFMLSDMET 337
           ++++   EL+   +  L+E     + +    ++    +    ++  ++ E + +    E 
Sbjct: 467 KILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLTLSNEG 526

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL------K 391
                           V  ++    ++     +   + +   +       +I        
Sbjct: 527 FTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEF 586

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQIK 448
                 + +DEII  I   +             +  +  I +   ++  +L K      K
Sbjct: 587 KWKEKGVKLDEIIKTIDLSETIMEAFSIEAFTAQKDMLFITDSGYIKKTTLDKFNTNYTK 646

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQ--IACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                L   +  + + L    ++     I  +      I   S +   R     ++    
Sbjct: 647 IMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDIL 706

Query: 507 KATLQQ-----AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                +        E +   V IS  G I          +    K+  S        +  
Sbjct: 707 PNDSIEKVDFCDNYEYKSFYVNISKEGLI----------TISDLKDNKSHISLFTDSSK- 755

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLV 616
            ++L   +GKAY +PA    S +  G  I           I     ++ F ++    +  
Sbjct: 756 ILVLFDDEGKAYYIPAFMFQSIKEEGINISAF----TGDKISLLNAISTFRFEEDISIYF 811

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            S KG       SE+       + +     E+K+  ++        ++ ++ E   ++ F
Sbjct: 812 SSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRF 871

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLG 731
             + +  M +   GV   S KD     +           I    ++ ++   ++    + 
Sbjct: 872 KSEAVNPMGKMASGVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQ 931

Query: 732 KRGGVGSLVP 741
            R G+G+ + 
Sbjct: 932 NRAGIGNSLM 941


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/749 (29%), Positives = 367/749 (48%), Gaps = 77/749 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------MIEKEPITVVISN 526
                S       RRT   E   +  A  + A                +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGW-IRSLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            G  IR   +  V  L   +     ++  ++  HT     ++++ G    L   +L  G 
Sbjct: 530 DGRAIRLTHTGPVTRLEGFNS----TIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGE 585

Query: 585 -------------------------------------GHGEAIQLLIDLNHNQDIVTAFV 607
                                                     +     L   + +V    
Sbjct: 586 KSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILT 645

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
            D    + +++++G    +       +T+   + + +   +++        D  + ++  
Sbjct: 646 LDEDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMIST 703

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           + +LL    +++    R   GV   S K+
Sbjct: 704 DAQLLRTPANKVRPQGRNAGGVAGMSLKE 732



 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 27/214 (12%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +A   ++G+++   L     + + +++  G    +   +  S +        +I+L    
Sbjct: 630 AAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRP-DYPSTQDR----FSIINLEGTD 684

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            ++ A       +++++S+         +++    R   G   + +    ++     V  
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPD 744

Query: 659 D-------------HVAVVGENRKLL-IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           +               A+ G N+  + +  +D+ P   RG  GVR+Q +  G  +  + F
Sbjct: 745 ELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  ID+ G+     E D      +R G G
Sbjct: 805 VGPDPIHAIDAHGKPVKLPELDE-----RRDGSG 833


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 210/514 (40%), Positives = 326/514 (63%), Gaps = 12/514 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 10  NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 70  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 130 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +P+I+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 190 HHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 249 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 308

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +   +++ ++F ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ 
Sbjct: 309 IEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNH-PKVLNLKEILYHYLEHQKVVIR 367

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430
           RR+ F ++  + R  IL+GL IA  NID II +IR     D  K  ++++F+L++ Q  A
Sbjct: 368 RRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQA 427

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           IL++RL+ L  LE  +I+ E  NL+A    + ++L   ++    I  E+ E+K  ++   
Sbjct: 428 ILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK- 486

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
               RRT     +    +   + +I +E + + +
Sbjct: 487 ----RRTEIL--AGDLVSLEDEDLIPEEEVAITL 514


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/749 (29%), Positives = 367/749 (48%), Gaps = 77/749 (10%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S+    E ++ + +   +E  +L YA S I  RA+PD +DG KPV RRI+  M +MG
Sbjct: 1   MSDSSL---ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS R+VG+V+GKLHPHGD ++YD+LVRLAQPF  R PLI G GNFG++D D 
Sbjct: 58  LTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DG 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR+   A  ++  +DED VDF   Y+ + ++P V P+ FPNLL NG +GIAV
Sbjct: 117 PAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAV 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HNV E   AA+ L+D+P+    +L++Y  GPD P GGIIV   + I E+Y  
Sbjct: 177 GMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIV-GLDGIREAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F  RAR  +E+V      IV+TE+PYQV   R+ EK+ E + + ++  +   +D S
Sbjct: 236 GRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLS 295

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++        P+ ++ S++  + ++  F +N   L  G+ P+ + L   L+ +
Sbjct: 296 DRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQ-PRTLGLKAALQVF 354

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           + HR EV  RRS FR++    R+ ++ GLLIA LN+DE+I +IR  D     +  +++ F
Sbjct: 355 VDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMTVF 414

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q + IL LRLR L K    ++++E D L     +++ +L S ++  + +  ++R+
Sbjct: 415 DLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILASTEKLHDVVRSDMRQ 474

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------MIEKEPITVVISN 526
                S       RRT   E   +  A  + A                +   P  +++  
Sbjct: 475 TAARLSTP-----RRTVLLEEDGSAVAASKDAALPVLGAMTVSDVPLEVPDVPCRIILGA 529

Query: 527 RGW-IRSLKSHSV-DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
            G  IR   +  V  L   +     ++  ++  HT     ++++ G    L   +L  G 
Sbjct: 530 DGRAIRLTHTGPVTRLEGFNS----TIAGSILTHTRGSFGVVTSSGFVVRLDVLSLPPGE 585

Query: 585 -------------------------------------GHGEAIQLLIDLNHNQDIVTAFV 607
                                                     +     L   + +V    
Sbjct: 586 KSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGETVVGILT 645

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666
            D    + +++++G    +       +T+   + + +   +++        D  + ++  
Sbjct: 646 LDKDETVGMMTARGIVKRMRPD--YPSTQDRFSIINLEGTDQLIYAGACPDDAQIVMIST 703

Query: 667 NRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           + +LL    +++    R   GV   S K+
Sbjct: 704 DAQLLRTPANKVRPQGRNAGGVAGMSLKE 732



 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 27/214 (12%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +A   ++G+++   L     + + +++  G    +   +  S +        +I+L    
Sbjct: 630 AAARLEDGETVVGILTLDKDETVGMMTARGIVKRMRP-DYPSTQDR----FSIINLEGTD 684

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTG 658
            ++ A       +++++S+         +++    R   G   + +    ++     V  
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPD 744

Query: 659 D-------------HVAVVGENRKLL-IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF 703
           +               A+ G N+  + +  +D+ P   RG  GVR+Q +  G  +  + F
Sbjct: 745 ELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAF 804

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              + +  ID+ G+     E D      +R G G
Sbjct: 805 VGPDPIHAIDAHGKPVKLPELDE-----RRDGSG 833


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/688 (32%), Positives = 381/688 (55%), Gaps = 34/688 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP + P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT+  E     K    + +I +E + + +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTSIIEDDEKAK-IDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK- 651
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMALKLKKGESLVK 660

Query: 652 --LVVKVTGDHVAVVGENRKLLIFSIDQ 677
             LV +   +    + + +K L F+I++
Sbjct: 661 SDLVDRTREEKFFNI-KTQKGLSFNIEE 687



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/491 (12%), Positives = 150/491 (30%), Gaps = 46/491 (9%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR---SLDPDLLMESIFMLSDMET 337
           ++++   EL+   +  L+E     + +    ++    +    ++  ++ E + +    E 
Sbjct: 467 KILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLTLSNEG 526

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL------K 391
                           V  ++    ++     +   + +   +       +I        
Sbjct: 527 FTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIKVINIPEF 586

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQIK 448
                 + +DEII  I   +             +  +  I +   ++  +L K      K
Sbjct: 587 KWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK 646

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQ--IACEIREVKEIFSKSTDLGRRRTTF------C 500
                L   +  + S L    ++     I  + + +     + +     R          
Sbjct: 647 IMALKLKKGESLVKSDLVDRTREEKFFNIKTQ-KGLSFNIEEPSLEPVDRNIIGYKLFDI 705

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             + + K        E +   V IS  G I          +    K+  S        + 
Sbjct: 706 LPNDSIKKVDFCDNYEYKSFYVNISKEGLI----------TISDLKDNKSHISLFTDSSK 755

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLL 615
             ++L   +GKAY +PA  L S +  G  I           I     ++ F ++    + 
Sbjct: 756 -TLVLFDDEGKAYYIPAFMLQSIKEEGINISAF----TGDKISLLNAISTFRFEEDISIY 810

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLI 672
             S KG        E+       + +     ++K+  ++    +    + ++ E   ++ 
Sbjct: 811 FSSEKGLIKRTLLGELKIEGNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIR 870

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WL 730
           F  + +  M +   GV   S KD     +           I    ++ ++   ++    +
Sbjct: 871 FKSEAVNPMGKMASGVTGISLKDLDKVILASIVDENDTRKIKIKTKAKDKGTIEVNKIKV 930

Query: 731 GKRGGVGSLVP 741
             R G+G+ + 
Sbjct: 931 QNRAGIGNSLM 941


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/771 (30%), Positives = 381/771 (49%), Gaps = 39/771 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M       +     E ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MSPSTTHTTPDEPSERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KSAR+ GEV+GKLHPHGD ++YD++VR+AQPF  R PLI G GNFG+
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  LID+P+ +++ L+ ++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTII-GLSGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RAR  VE +      +VVTE+PY V   ++IEKI + +  K++  + +
Sbjct: 239 DAYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++E ++  + +E  F +N   L  G  PQ + L  
Sbjct: 299 VTDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSINNVALVDGS-PQTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ ++AHR +V+ RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D     +  
Sbjct: 358 LLQVYVAHRLDVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+  Q D IL LRLR L +    +++ E D L AE  +++++L   ++    ++
Sbjct: 418 LMDVFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGW-I 530
            E++EV + F        RRT   E + +      +           P  V++S  G  +
Sbjct: 478 TELQEVADRFGTP-----RRTLLTEAAPSVAGASSRRAAPVLEIADVPCRVLLSTTGRAV 532

Query: 531 R---SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL------ 581
           R      +    L  +     D++  A+   +  RI  ++  G+  T+   +L       
Sbjct: 533 RVDLPTDAPGTPLQTVRRSSHDAVLTAIETTSRTRIGAITNTGRLITMTPVDLPVVPVAS 592

Query: 582 SGRGHGEAIQLLIDL-NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G G  I+  + L +  + +V      +   + + + +G    V  S + A       
Sbjct: 593 VQLGAGVRIRDYLGLTDRKERVVALVALGTDEAIALGTRQGVVKRVAPSALPAKPEY--E 650

Query: 641 FLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
            + +   +++    +    D +  V    +LL F    +     +  G+   +   G   
Sbjct: 651 VIALKKGDEVVGARQGAETDELVFVTSEAQLLHFPAVSVRPQGVQAGGIAGVNLGAGAHV 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                   EG   +  +  S   +  D        G         FPR G+
Sbjct: 711 LFFSSVAPEGAEVVTVSASSATIAGVDP-------GRAKVSAFGDFPRKGR 754


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/767 (30%), Positives = 383/767 (49%), Gaps = 57/767 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   +EE YL YA S I  RA+PD RDG KPVHRRI+++M E G     A+ KS
Sbjct: 22  RVFDNPVTTEIEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNHAYVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +R+VG+V+G+ HPHGD ++YD++VRLAQ F    PL+ G GNFG+ D D  AA RYTEAR
Sbjct: 82  SRVVGDVMGRYHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASRYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+  A L++  + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN
Sbjct: 141 MSSEAMLLVDELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI  AA  LI++P  S++KL+E++ GPD PTGG ++   + + ++Y  GRG  R+RA+
Sbjct: 201 LGEIVAAARWLINHPNASLDKLMEFVPGPDLPTGGQLL-GLDQVRKAYETGRGVVRMRAK 259

Query: 256 WCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAE-DVRIV 312
                + G     I VTE+PY V   ++IE+I E +   + +  + D++D +   +   +
Sbjct: 260 ATTGPIEGSRRQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDRENGTKL 319

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV+
Sbjct: 320 VIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PRTLGLKELLEVFLAHRYEVV 378

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ +R +  + R+ +++GLL A ++ID++I +IR   N    K  ++ RF L+E Q  
Sbjct: 379 TRRTRYRRRKREERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKRFKLSEVQAA 438

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL+  LR L K ++ +++SE D L  E  ++  +L+  K     ++ E+ +V + F+  
Sbjct: 439 YILDTPLRRLTKYDKLELESEQDRLRKEIAELTEILDDEKVLKRVVSKELAKVAKDFAVP 498

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHF 545
                RRT   +    +     +         +P  V++S+ G +    + S +      
Sbjct: 499 -----RRTALIDGDLKEVLAASKPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGRR 553

Query: 546 KEG----DSLKIALHAHTTDRILLLSTDGKAYT---LPAGNLLSGRG-----HGEAIQLL 593
           + G    D++   +H     ++LL++  G+A+    LP   L    G      G  ++ L
Sbjct: 554 RSGRARHDAIAAMVHTTARGQVLLVTNRGRAFKTDVLPLPVLPESSGTVSLRDGVDVREL 613

Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTFLK 643
             L  ++ +V         +    L + +  G   +      V   E           + 
Sbjct: 614 APLERDERVVGLAPLGEQAQGSPGLALGTRHGVVKVCAPDWPVRSDEFD--------VIT 665

Query: 644 VSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISD 699
           +   +++     +T   + +  V     LL F    +     RG GV   +  KD  +  
Sbjct: 666 LKDGDEVVGATWLTDGAETLTFVTSQASLLRFDASLVRPQGLRGGGVAGINLPKDSEVVF 725

Query: 700 VICFKICEGL----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               +  +        + + G +   +        G R   G    +
Sbjct: 726 FGAVRTDDAEHGEPMVVTATGETVKVTPLSQYPAKG-RATGGVRAHR 771


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/670 (32%), Positives = 366/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IAIIR+    K        +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +      G  R T      A      + +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKY------GDERKTNIIEDDAKSKIDIEELIIVEEVMITLSKDGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-D 595
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+     +  GE +  +I  
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 596 LN-HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
           LN  ++ IV       ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 135/387 (34%), Gaps = 51/387 (13%)

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
               + E L  ++ +    DE I  + + D   P  + RF            ++  SL K
Sbjct: 588 KWKEKGERLDTIIKSLNLEDEKIVEVISVDNFNPNKIFRFITKSG------GIKESSLDK 641

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ--IACEI-----REVKEIFSKSTDLGR 494
            E    K +   L  +   ++  L   ++  +   I  ++      EV E+ +   ++  
Sbjct: 642 FETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVPRNILP 701

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            +     +        +    E     + I+++  ++  K+  VD++             
Sbjct: 702 IQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKI--------- 752

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAFV---YDS 610
              +++  +LL S  G  Y +P   L +       +++   +L   + I+       Y+ 
Sbjct: 753 ---NSSKTLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYND 809

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667
              L   S KG       +E   +T+K + F K+ +E+   + V +      ++ ++ + 
Sbjct: 810 NLALYSFSKKGLVKKTLLNEFKVDTQK-QFFYKLKTEDDEVISVDINNITLGNLIIITKK 868

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---------------DVICFKICEGLTW 711
              + F ++ +  M +   GV   S ++                    VI     + ++ 
Sbjct: 869 GMAIRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSKYLDVNGNTVIISPRSQEISL 928

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGS 738
           I  A    N +  D+   L  R G G+
Sbjct: 929 ISKANEKLNITVEDIK--LQNRAGRGT 953


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/771 (30%), Positives = 381/771 (49%), Gaps = 39/771 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +     E ++ V +   +E  +L YA S I  RA+PD RDG KPV RRI++ 
Sbjct: 1   MSPSTTNTTPDEPAERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSEMGL       KSAR+ GEV+GKLHPHGD ++YD++VR+AQ F  R PLI G GNFG+
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +++G+DED VDF   Y+    +P V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT++  HN+ E+  AA  LID+P+ S++ L+ ++ GPD PTGG I+     + 
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTII-GLSGVK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG F+ RAR  VE +      +VVTE+PY V   ++IEKI + +  K++  + +
Sbjct: 239 DAYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITN 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++E ++  + +E  F +N   L  G  PQ + L  
Sbjct: 299 VTDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSVNNVALVDGS-PQTLGLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +L+ ++AHR EV+ RR+ +R+     R+ ++ GLLIA L+IDE+I +IR  D     +  
Sbjct: 358 LLQVYVAHRLEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARAR 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++  F L+  Q D IL LRLR L +    +++ E D L AE  +++++L   ++    ++
Sbjct: 418 LMDVFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIAELEAILADPRRLRALVS 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE-----KEPITVVISNRGW-I 530
            E++EV + F        RRT   E + +      +           P  V++S  G  +
Sbjct: 478 TELQEVADRFGTP-----RRTLLTEAAPSVAGASSRRAAPVLEIADVPCRVLLSTTGRAV 532

Query: 531 R---SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL------ 581
           R      +    L  +     D++  A+   +  RI  ++  G+  T+   +L       
Sbjct: 533 RVDLPTDAPGTPLQTVRRSSHDAVLTAIETTSRTRIGAITNTGRLITMTPVDLPVVPVAS 592

Query: 582 SGRGHGEAIQLLIDL-NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              G G  I+  + L +  + +V      +   + + + +G    +  S + A       
Sbjct: 593 VQLGAGVRIRDYLGLADRKERVVALVALGTDEAIALGTRQGVVKRIAPSALPAKPEF--E 650

Query: 641 FLKVSSEEKMKLVVK-VTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
            + +   +++    +    D +  V    +LL F    +     +  GV   +   G   
Sbjct: 651 VIALKKGDEVVGARQGAETDELVFVTSEAQLLHFPAVSVRPQGIQAGGVAGVNLGAGARV 710

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                   EG   +  +  S   +  D        G         FPR G+
Sbjct: 711 LFFSSVAPEGAEVVTISASSATIAGVDP-------GRAKVSAFGDFPRKGR 754


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 227/814 (27%), Positives = 376/814 (46%), Gaps = 104/814 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ YA+S I  RA+PD RDG KPV RR+++AM ++GL++    
Sbjct: 1   MAEQIIKTEYSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV LAQ F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + +    +D+D VDF   ++E + EP V P + PN+L NG  GIAVGMAT+I
Sbjct: 121 EAKLKKFTQDVYLADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +DN  I+ E+LL+ + GPDFPTGGI V ++  + + Y  G G  +
Sbjct: 181 PTHNLGEVVDAVIAYMDNNNITTEELLQIMPGPDFPTGGI-VANKSDLKDIYENGTGKLK 239

Query: 252 VRARWCVEE-VGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           +R +   E+  GR    +V+TEIPY        + I  + +L+  K+   + DI + S E
Sbjct: 240 LRGKLEFEKGKGREKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDE 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + L   ++  + +E  F +NM  ++ G  P+VM L  I+K  +  
Sbjct: 300 NGIRIVLELKKGADVEKLKNILYKKTKLEDTFGVNMLAIADG-RPEVMGLKSIIKYNVDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------- 417
           + E+  R+ +  +     + EI +GL+ A   ID II IIR     K V           
Sbjct: 359 QYELAQRKYTTLLNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVHGKTDD 418

Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                          S TE Q  AIL LRL  L  LE   ++ E + L+ +  + + +L 
Sbjct: 419 IKFKNPESEILAGNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYEDILE 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + K     I  +++ +K+ ++        R T  E     +A   +    ++ +  V   
Sbjct: 479 NRKTMTKTIKKDLKAIKKEYALP------RKTLIE--DGKEAVFDENAFVEQEVVFVQDK 530

Query: 527 RGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
            G+ + L   + D +     KE    K       TD I + + +G  + +    + +   
Sbjct: 531 FGYSKLLDPAAFDRNIESVTKEN---KYYFRCMNTDSICIFTDNGNVHQIKVSAIPTKKV 587

Query: 584 RGHGEAIQLLIDL-NHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           R  G  I  L +  +  + IVT   +D     KLL  +  G   +V+ +E   N RK   
Sbjct: 588 REKGIPIDNLGNYSSQGESIVTLVSFDMIKDKKLLFTTKNGMIKLVDGNEFETN-RKTML 646

Query: 641 FLKVSSEEKMKLV--VKVTGDHV------------------------------------- 661
             K+  ++++  V   +V+   +                                     
Sbjct: 647 ATKLGKDDEVVSVKITRVSNKQISEEQVEEMPVMLTGGSDDFEPLDFEQMELFDTTASMD 706

Query: 662 --------------AVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC 706
                          +  E    L F + ++PEM +   GV+     DG     +     
Sbjct: 707 VGQEQELQYTREILVLQTEEGIFLRFPLKEVPEMKKATLGVKGIKLNDGDFVSKVYLLDT 766

Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
                +   G++ +  +      +GKRG  G  V
Sbjct: 767 GDNEVVKCNGKTVDLRKL----KIGKRGTKGVKV 796


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/703 (32%), Positives = 386/703 (54%), Gaps = 37/703 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   + N+  + L  A+ E YL YA+   ++RA+PD+RDG KPVHRRII+    +     
Sbjct: 6   NIPKDSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPD 65

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+++GK HPHGD SVY+S+V LAQ F  R+PLI G GN+G++DGDSAAA 
Sbjct: 66  KPYYKSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAM 125

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T +A  ++  +D+D VD  D Y+  + EP V P+ +PNLL NG  GIAVG++T
Sbjct: 126 RYTEARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLST 185

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN++E+ +A L  IDN ++++ +L+E + GPD PTGGII+  + S++ +Y  G G 
Sbjct: 186 NIPPHNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIII-GKNSLIAAYETGEGK 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDES 305
             +RAR  +E +  G   IV++E PY+  K+++++ I+E+   K+    +  + DIRDES
Sbjct: 245 VTLRARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDES 304

Query: 306 AEDVRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                  +    +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  I+ 
Sbjct: 305 DRRGIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGK-PETMGLKTIIG 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVS 419
            ++ HR++++ RR+   + A  +R  I++G + A   +DEII+ IR     K     +V+
Sbjct: 364 HYVNHRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVA 423

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F     Q  AI+ L L  L  LE    K E D L    +K++ +L+  K+    +  E+
Sbjct: 424 KFGFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKLIKKLEKILSDEKELLRVVKNEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538
           +EV++ + +      RRT+  E   ++     +     E I V +SN G+I+S+   +  
Sbjct: 484 KEVEKKYGE-----DRRTSIVE-DDSEAKIDVEEFTVVEDIVVTMSNDGYIKSVPKKTYL 537

Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
               D+S + ++EGD  +  +  +T   +L+ + +G  Y L   ++     +  GE I  
Sbjct: 538 RSNSDVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKLRGNSIPEYKWKEKGEKIDN 597

Query: 593 LID-LNHN-QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           LI  ++   + I+  +  +       ++ ++ +G+       +      K    LK+  +
Sbjct: 598 LIKGIDLGKEKILNIYSVESLTEQKDIIFITDRGSLKKTSLDKFDTIYSK-IMALKLKKD 656

Query: 648 EKMK---LVVKVTGDHVAVVGENRKLLIFSIDQ--IPEMSRGK 685
           EK+    LV++   +    V    K L F++ +  I EM R K
Sbjct: 657 EKLIKAELVLRTREEGFIKVSTE-KGLDFTVREPLIEEMDRNK 698



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/457 (14%), Positives = 141/457 (30%), Gaps = 33/457 (7%)

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             + D+S   + +  F     +   +  +        +T    N +V  +          
Sbjct: 497 SIVEDDSEAKIDVEEFTVVEDIVVTMSNDGYIKSVPKKTYLRSNSDVSDIEYREGDFNRF 556

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            +++   AH   +     +  M  +                ID +I  I    +    + 
Sbjct: 557 -LIETNTAHNLLMFTDEGN--MYKLRGNSIPEYKWKEKGEKIDNLIKGIDLGKEKILNIY 613

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           S  SLTE Q D I      SL+K    +     D + ++   +       K+    I  E
Sbjct: 614 SVESLTE-QKDIIFITDRGSLKKTSLDKF----DTIYSKIMALK-----LKKDEKLIKAE 663

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           +               +   F       +   +  M  +      +        +++   
Sbjct: 664 LVLRTREEGFIKVSTEKGLDFTVREPLIEEMDRNKMGHQCISVCPMDRIVSSEFVENDDY 723

Query: 539 DLSALHFKEGDSLKI-------ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
               +   +   +K         +   T+  +L+   DG+   +P+    +       + 
Sbjct: 724 RTFGIQINKNGIIKTKASSSGNYIDTTTSSTLLIFIDDGRVINIPSYMFKNMDDKVLNLS 783

Query: 592 LL-IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSS 646
            L  + N N  I+       ++    +   SSKG     + SE + +  KG     K+ +
Sbjct: 784 ELYCEFNSNNKIIKTLSIEEFNENKFIYFFSSKGFVKKTKLSEFVES--KGIEVCYKLRN 841

Query: 647 EEKMKL---VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
           +E M +   V +   + V ++ +    + F    +  M +   GV   S  +  I++   
Sbjct: 842 KEDMLVNVDVSENEEEEVVLITKKAMGIKFLSSSVSVMGKIASGVTGISLNEEDITEY-G 900

Query: 703 FKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           F + E L   I  +  +           +  RGG G 
Sbjct: 901 FVVKENLNKIILKSKLNDKIEVEIEDIKVQNRGGKGK 937


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/688 (32%), Positives = 380/688 (55%), Gaps = 34/688 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+K+PN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT   E     K    + +I +E + + +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTAIIEDDEKAK-IDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK- 651
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMALKLKKGESLVK 660

Query: 652 --LVVKVTGDHVAVVGENRKLLIFSIDQ 677
             LV +   +    + + +K L F+I++
Sbjct: 661 SDLVDRTREEKFFNI-KTQKGLSFNIEE 687



 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/491 (12%), Positives = 150/491 (30%), Gaps = 46/491 (9%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR---SLDPDLLMESIFMLSDMET 337
           ++++   EL+   +  L+E     + +    ++    +    ++  ++ E + +    E 
Sbjct: 467 KILKSEKELLKVIKKELIEVKETYNDKRRTAIIEDDEKAKIDVEEIIVEEDVVLTLSNEG 526

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL------K 391
                           V  ++    ++     +   + +   +       +I        
Sbjct: 527 FTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEF 586

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQIK 448
                 + +DEII  I   +             +  +  I +   ++  +L K      K
Sbjct: 587 KWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK 646

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQ--IACEIREVKEIFSKSTDLGRRRTTF------C 500
                L   +  + S L    ++     I  + + +     + +     R          
Sbjct: 647 IMALKLKKGESLVKSDLVDRTREEKFFNIKTQ-KGLSFNIEEPSLEPVDRNIIGYKLFDI 705

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             + + K        E +   V IS  G I          +    K+  S        + 
Sbjct: 706 LPNDSIKKVDFCDNYEYKSFYVNISKEGLI----------TISDLKDNKSHISLFTDSSK 755

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLL 615
             ++L   +GKAY +PA  L S +  G  I           I     ++ F ++    + 
Sbjct: 756 -TLVLFDDEGKAYYIPAFMLQSIKEEGVNISAF----TGDKISLLNAISTFRFEEDISIY 810

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLI 672
             S KG        E+       + +     ++K+  ++    +    + ++ E   ++ 
Sbjct: 811 FSSEKGLIKRTLLGELKIEGNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIR 870

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WL 730
           F  + +  M +   GV   S KD     +           I    ++ ++   ++    +
Sbjct: 871 FKSEAVNPMGKMASGVTGISLKDLDKVILALIIDENDTRKIKIKTKAKDKGTIEINKIKV 930

Query: 731 GKRGGVGSLVP 741
             R G+G+ + 
Sbjct: 931 QNRAGIGNSLM 941


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 207/741 (27%), Positives = 367/741 (49%), Gaps = 26/741 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++  N    E +   SL   + E++  Y+   I++RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MNKENQQKLEKIINNSLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKSAR+VG+VIGK HPHGD SVYD++V ++Q +     L+   GN G++D D 
Sbjct: 61  LTSDKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM+++   +L  + ++ V F   +++ + EP V PS FPNLL NGT+GIA+
Sbjct: 121 AAAMRYTEVRMSKICNYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAI 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-- 243
           GMAT +P HN+ E+ EA +A +  P I+++ L+E+I GPDFPTGGII  ++      Y  
Sbjct: 181 GMATEMPPHNLNEVLEATIAKLKRPTITLDGLMEHIKGPDFPTGGIIYGNKGIFEAFYNG 240

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           +L +   ++ + + V++  +    I +TEIP+ V KS+L+  I  LI  + I  L +I+D
Sbjct: 241 KLDKEKIKLFSNYTVKQTDKNK-LIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIKD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +S  +   ++   ++  + + ++  +   + M+  +  N  V+S    P++M L+ +L  
Sbjct: 300 QSDREGIRIVITLSKDANEESIISFLLQKTSMQVNYSYNNVVISNNS-PKLMNLNELLDA 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVS 419
           ++AH ++V  +  ++       R+EI+ G L      D +I +IRN +  K      +  
Sbjct: 359 YIAHIKDVKTKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSEGSKSGVIKALKE 418

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F  ++NQ  AI  LRL  L K ++     E   L      I  LL+  K+    +   +
Sbjct: 419 SFGFSQNQATAIAELRLYRLSKTDKQAFLIEKAELEKNIANIKELLSDEKKFVGYLIELL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           R          ++   R T            ++ ++++E + +  S  G+I+ L    +D
Sbjct: 479 R------GIIKEIPTPRKTQIVAEEFSFNHDKKDLVKEEIVNISFSKNGYIKRLSQKIID 532

Query: 540 LSALH---FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI 594
            ++      KE D+L     ++T   IL+ +  G    +P   +L    +  G  +   +
Sbjct: 533 SNSPESYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIPVYKILESKWKDLGTHLSDFV 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKM 650
            L   + IV     +       ++++S +G A     S+  ++   K  T LK+   +++
Sbjct: 593 ALYPGESIVNVIDVEDWNVGDYVVIMSKQGYAKKTLISDFEVSRINKSYTALKIDKNDEI 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVICFKICE 707
             V    G   + +V        ++ + +     + KG +         ++     K  +
Sbjct: 653 VNVALSDGTKDILIVTAMGYTSKYNENDLNIYGPKAKGSKAVYLSNKDYVASFEMVKFND 712

Query: 708 GLTWIDSAGRSYNRSENDLLG 728
            ++ +   G        D+L 
Sbjct: 713 TVSMLTDDGYFKKMKAKDILY 733


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/687 (32%), Positives = 379/687 (55%), Gaps = 32/687 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +LK ++ 
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       R+T+  E     K    + +I +E + + +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RKTSIIEDDEKAK-IDVEEIIVEEDVVLTLSNEGFTKRIALKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMALKLKKGESLVK 660

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQ 677
              V  T +      + +K L F+I++
Sbjct: 661 ADLVDRTREEKFFNIKTQKGLSFNIEE 687



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 63/490 (12%), Positives = 150/490 (30%), Gaps = 44/490 (8%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR---SLDPDLLMESIFMLSDMET 337
           ++++   EL+   +  L+E     + +    ++    +    ++  ++ E + +    E 
Sbjct: 467 KILKSEKELLKVIKKELIEVKETYNDKRKTSIIEDDEKAKIDVEEIIVEEDVVLTLSNEG 526

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL------K 391
                           V  ++    ++     +   + +   +       +I        
Sbjct: 527 FTKRIALKSYNRSSANVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIKVINIPEF 586

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQIK 448
                 + +DEII  I   +             +  +  I +   ++  +L K      K
Sbjct: 587 KWKEKGVKLDEIIKTIDLSETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTK 646

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQ--IACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                L   +  + + L    ++     I  +      I   S +   R     ++    
Sbjct: 647 IMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLFDIL 706

Query: 507 KATLQQ-----AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
                +        E +   V IS  G I          +    K+  S        +  
Sbjct: 707 PNDSIEKVDFCDNYEYKSFYVNISKEGLI----------TISDLKDNKSHISLFTDSSK- 755

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLV 616
            ++L   +GKAY +PA  L S +  G  I           I     ++ F ++    +  
Sbjct: 756 ILVLFDDEGKAYYIPAFMLQSIKEEGINISAF----TGDKISLLNAISTFRFEEDISIYF 811

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673
            S KG       SE+       + +     E+K+  ++        ++ ++ E   ++ F
Sbjct: 812 SSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRF 871

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLG 731
             + +  M +   GV   S KD     +           I    ++ ++   ++    + 
Sbjct: 872 KSEAVNPMGKMASGVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQ 931

Query: 732 KRGGVGSLVP 741
            R G+G+ + 
Sbjct: 932 NRAGIGNSLM 941


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/670 (32%), Positives = 363/670 (54%), Gaps = 31/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ + YL YA+   K+RA+PD+RDG KPVHRRI++   ++       + 
Sbjct: 11  DNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V +AQ F  R  LI G GN+G++DGD AAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  +A  +L+ +D++ VD    Y++ + EP V PS++PNLL NGT GIAVG+AT+IP 
Sbjct: 131 ARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN EI+ ++L+ Y+ GPD PTGGI++  + SI+ +Y  G G   +R
Sbjct: 191 HNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILI-GQNSILAAYETGEGKVTLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E +  G   IV+TE P++  K++L++ I+E+   KR    +  + DIRDES    
Sbjct: 250 AKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDESDRSG 309

Query: 310 RIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    ++ D    D +++ +F  +D++     NM  L+ G+ PQ M L  I+K ++ 
Sbjct: 310 VRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGK-PQTMGLKTIIKHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSL 423
           H++E++ RR+   +   ++R  I++G + A   +DEII  IR     K      +S+F  
Sbjct: 369 HQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAGVNLISKFGF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q +AIL L L  L  LE    + E   L    +K+  +L+  K+    +  E++EV 
Sbjct: 429 TEIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIKKLKKILSEEKELLKVVKNELKEVS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539
           + +         R T       +     + +I  E + + +S  G+I+ +   + +    
Sbjct: 489 DKY------RNPRKTSIIKDDNEAKIDVEELIVVEDVMITLSKDGFIKRIPLKTFNRLNA 542

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLI-- 594
               + ++EGD LK    ++TT+ ILL +  G  Y     N+  G+    GE +  +I  
Sbjct: 543 KAEDIEYREGDELKFLFKSNTTESILLFTNKGNMYQTKGINIPEGKWKEKGEKVDNIIKT 602

Query: 595 -DLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +L     I   +   +  +  +  ++S+G        +    +      +K+   E++ 
Sbjct: 603 LNLEEENIIFATSVTSFIPSKYIQFITSRGGIKRSSLDKFQT-SYTKLQAIKLKELEEVI 661

Query: 652 LVVKVTGDHV 661
            V+ +  + V
Sbjct: 662 DVILLNQEEV 671



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 117/333 (35%), Gaps = 43/333 (12%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE-VKEIFSKSTDL 492
           ++  SL K +    K +   L   +E ID +L + ++    I+ E +E +          
Sbjct: 634 IKRSSLDKFQTSYTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSLQIPKIE 693

Query: 493 GRRR----TTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSHSVDLSALHFK 546
              R    T    +S  D+    +     E +   + I+++G I+              K
Sbjct: 694 DLPRNILPTIMFNLSNKDEIIKVEYSETMEFVNFSIGITSKGTIKGFN---------SIK 744

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-AIQLLI-DLNHNQDIVT 604
           + D+LK  +   +   +L+ +  GK + +PA  LLSG   GE  +  ++ ++  ++ ++ 
Sbjct: 745 KNDNLK--VSTDSLSNVLMFTNKGKVFKIPAF-LLSGVSKGELPLDKIVDNIEKDEKVIK 801

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
            F    ++    +   + +G       +E   N     T+      +++  V       V
Sbjct: 802 VFSLKTFEENKFIYFFTRRGMIKKTALTEFDGNYSTQITYKFKYDNDELISVELYDDCQV 861

Query: 662 --AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--------------ICFK 704
              ++ +    + FS + +  M +   GV   S K+                    I   
Sbjct: 862 EMLIITKKAMGIKFSSENVNTMGKVASGVTGISLKENDEVIYGSLIGSQSRDNTNEIALT 921

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             + +T I            D+   L  R G G
Sbjct: 922 STDKITLISKNKEKKEVELEDIK--LQNRAGKG 952


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 390/753 (51%), Gaps = 48/753 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            ++ +S    ++  ++ YAL+ + +RA+PD+RDG KPVHRRI++AM ++G+    A+KKS
Sbjct: 4   KIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKS 63

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEVIGK HPHGD +VY+S+V+ AQ FV+  PLI G GNFG++DGDSAAA RYTEAR
Sbjct: 64  ARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEAR 123

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ VA  ++Q + +  VDFRD ++  + EPVV P+K PNLL NG  GIAVGMA   P H 
Sbjct: 124 LSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHG 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           V  + +  +A  D  +I IE L++ I  PD+P+GGI + ++  + + YR G G   +RA+
Sbjct: 184 VNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGI-ITNKNELRDLYRTGIGKAVIRAK 242

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSR--LIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             +E+ G G   +VV EIPY    S+  L  K+  ++I K++  + ++ DES +D   ++
Sbjct: 243 IDIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIV 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +D D L+  ++  + +++       VL  G VP  + L    K +   ++E+  
Sbjct: 303 LEVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNG-VPTTINLKDYCKHYFDFQKEITR 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------- 419
           +R  + +     R EIL+GL+ A   +D II ++R   K K   V               
Sbjct: 362 KRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISFKTK 421

Query: 420 -------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                  +F+ TE Q  AIL++RL+ L  LE  Q+  E   +LAE E+ + +L S K+  
Sbjct: 422 KHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLGSEKEML 481

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I   +R  K+      D GR R T  +  +          I++E + V+I   G+ +S
Sbjct: 482 KVIKKYLRGFKK------DFGRERRTEIQEKKT---IEYVEEIKEEDVWVLIDKFGYTKS 532

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAI 590
           + + SV+ S+         K  +    T ++ + +  G+ Y +   ++     +  G  I
Sbjct: 533 VDTISVERSSEETLSE--YKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKGVPI 590

Query: 591 QLLIDLNHNQD--IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
           Q L  +  N+    +T      T ++++++  G       SE+I+ +R      K+  ++
Sbjct: 591 QRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELIS-SRSVVVATKLEEDD 649

Query: 649 KMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           ++  +  +    + V V  +   +L FSI++IP + +  KGV+  S  +  + + +    
Sbjct: 650 EVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLMEEDVIEGVYILN 709

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
                     G+    S+ +       RG  G 
Sbjct: 710 ENNKDVKQLNGKQIELSKVE----RKTRGKKGI 738


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/792 (27%), Positives = 385/792 (48%), Gaps = 75/792 (9%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T++ E +        +++ Y+ Y++S I  RA+PD RDG KPV RR+++AM ++G
Sbjct: 1   MIEMETIMAEQIVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L++    +KSARIVG+ +GK HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD 
Sbjct: 61  LNYDKPHRKSARIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDG 120

Query: 126 AAAYRYTEARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AAA RYTEA++ +  + +    +D+D VDF   ++E + EP V P + PNLL NG  GIA
Sbjct: 121 AAAMRYTEAKLKKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGM T+IP+HN+ E+ +A  A +D+  I+ E L+EY+IGPDFPTGG++V ++  +   Y 
Sbjct: 181 VGMTTNIPTHNLGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGGLVV-NKSELPAIYE 239

Query: 245 LGRGGFRVRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLE 299
            G G  ++R +   E   +      +V+TEIPY        + +  + +L+  K+   + 
Sbjct: 240 SGTGKIKLRGKVVFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIV 299

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           DI +ES+++   ++    R+ D + L   ++  + +E  F +NM  +  G+ P+ + L  
Sbjct: 300 DISNESSKEGIRIVLELKRNADVEKLKNMLYKKTKLEDTFGVNMLAIVDGK-PETLGLKS 358

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI------------- 406
           I+K  +  + ++  R+ +  +       EI +GL+ A   ID II I             
Sbjct: 359 IIKHHIDFQYQLATRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDC 418

Query: 407 --------IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                   I  + +      S    TE Q  AIL LRL  L  LE  +++ + +  L + 
Sbjct: 419 LVNGNVKDINFKSETSRKAASGLHFTERQASAILELRLYRLIGLEILELQKQYEQTLKKI 478

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            + + +L S     N I  +++ +K+ ++        R T  E ++   A  ++  ++++
Sbjct: 479 AEYEKILGSRTAMKNVIKKDLQAIKKEYALP------RKTVIEDAK--AAVFEEEKVKEQ 530

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            +  ++   G+ +++   + + +       +  K       TD+I + + +G  + +   
Sbjct: 531 EVVFIMDRFGYSKTIDIAAYERNMEAVHNEN--KYIFKCMNTDKIYIFTDNGNLHQIKVM 588

Query: 579 NLL--SGRGHGEAIQLLIDLN-HNQDIV--TAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633
           +L     R  G  I  + + +   ++IV  +A    + CKLL V+ +G   +V+ SE  A
Sbjct: 589 DLPFTKFRDKGVPIDNVGNYDSSGENIVFLSAAGNITGCKLLFVTKQGMMKLVDTSEFEA 648

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVT-----------------------GDHVAVVGENRKL 670
            ++K     K++  + +  ++K                           +V V  EN   
Sbjct: 649 -SKKTVAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVF 707

Query: 671 LIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
           L F + +IP+  +   GVR     KD  + DV      E     D +     ++ +    
Sbjct: 708 LKFPLTEIPQKKKNAVGVRGIKLVKDDTVDDVYLIGNTE-----DVSTEYCGKTIDLGRM 762

Query: 729 WLGKRGGVGSLV 740
            L  R   G+ V
Sbjct: 763 KLAHRDTKGTKV 774


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/675 (32%), Positives = 364/675 (53%), Gaps = 33/675 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N+    + N+  + +  A+ + YL YA+   K+RA+PD+RDG KPVHRRII+    + 
Sbjct: 2   VKNTVIPKDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGSYMLK 61

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDS
Sbjct: 62  AFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQDGDS 121

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR+T +A  +++ +++  V+  D Y+  + EP V P+++PNLL NG  GIAV
Sbjct: 122 AAAMRYTEARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAV 181

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G+AT+IP HN++E+ +A +A IDN +I++E+L+ YI GPD PTGGII+  ++S++ +Y  
Sbjct: 182 GLATNIPPHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGGIII-GKKSMISAYET 240

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDI 301
           G G   +RA+  +E++  G   IV+TE PY+  K++L++ I+E+   KR    +  + DI
Sbjct: 241 GEGKVTLRAKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPISDI 300

Query: 302 RDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           RDES       +    +S D      +++ +   +D++     NM  L  G+    M L 
Sbjct: 301 RDESDRSGIRAVIEFKKSTDMKLAQKILKYLLKKTDLQCNISFNMVALGDGKPI-TMGLK 359

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM- 417
            ILK ++ +++E++ +R+   ++   +R  I++G + A   +DEII  IR+    K    
Sbjct: 360 LILKYYVEYQKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDAAS 419

Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +F  T  Q +AIL L L  L  LE    + E + LL   +K+  +L S K+    I
Sbjct: 420 NLMEQFDFTYPQAEAILELMLYRLTGLEIDSFEKEHEKLLKVIKKLTKILESEKEILKVI 479

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+ EV E +        RRT   E     K  + + +I+++ +   +S  G+I+    
Sbjct: 480 KKELIEVGEKYGD-----DRRTAIVEEDEKAKIDVDEIIIDEDIVI-TMSKEGYIKRTSL 533

Query: 536 HSVDLSALH-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGE 588
            S + S+       ++EGD  +  +++ T D ++  +  G  Y +   ++     +  GE
Sbjct: 534 KSYNRSSGKVEDIEYREGDFNEYFINSSTKDTLMFFTDSGDMYRIRGMDIPEFKWKEKGE 593

Query: 589 AIQLL---IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            +  L   IDL  N  I   +    ++     +  +S G          + N       L
Sbjct: 594 KLDNLIKGIDLEKN-HITAVYSIKDFNLQKDFVFFTSIGGIKRTGIESFVTN-YTKLMAL 651

Query: 643 KVSSEEKMKLVVKVT 657
           K+ + EK+  V  V 
Sbjct: 652 KLKNGEKLIGVELVD 666



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 81/250 (32%), Gaps = 29/250 (11%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           +              E +   + I+  G I+ L S     S             +  +++
Sbjct: 707 QGEDFAVKMDFSTEPEYKEFYININKSGIIKVLNSGKSSKS-------------VFTNSS 753

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL---IDLNHNQDIVTAFVYDSTCKLLVV 617
             IL+ + DG+  ++PA  L +    G  I++L   ID+ +   I++   +D    +   
Sbjct: 754 SYILIFTLDGEVLSIPAFMLQNVDNSGIDIKVLMKNIDVGNILKIISVEDFDCG-YVYFF 812

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSI 675
           +  G        E          +     ++ +  V     +   + ++ E    + F  
Sbjct: 813 TQYGMVKKTALMEFKQIAGCSTAYKFKDKKDSLVNVEYSDKEEIEIFLITERGMGIKFKA 872

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG------LTWIDSAGRSYNRSENDLLG 728
           + +  M +   GV   S K+       CF I         L  I   G     +  D+  
Sbjct: 873 NTVNTMGKLAAGVTAISLKEDD-KVAYCFLIDGNDSKDYKLNLISEKGNKEQINVKDV-- 929

Query: 729 WLGKRGGVGS 738
            L  R G G 
Sbjct: 930 VLQNRAGRGK 939


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/754 (27%), Positives = 369/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI V +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGI-VANQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY        + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGVNMLAVANG-RPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IRNEDKP 413
           +    +     + EI +GL+ A   ID II I                     I+ + K 
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
            + + D +          K+ L     D++ + + +G  + +   +L  G  R  G  I 
Sbjct: 545 DTSTYDRNKDT--ADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHN-QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + + +DIV           KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLND 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            E         +      +     +  R   G  
Sbjct: 722 QEEKEVEVKGKQVALHRLH-----IANRDTKGVK 750


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/670 (32%), Positives = 365/670 (54%), Gaps = 33/670 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  V L  A+ E YL YA+   KERA+PD+RDG KPVHRRI++    +       + 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++  LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+  ++  +L+ +D+D VD    Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA IDN EI I++L+E+I GPD PTGGI++  + S+  +Y  G G    R
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   I +TE PY+  K++L++ I+E+   +R    + L+ DIRDES  + 
Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +S D D    +++ +F  ++++     NM  L+ G+ P+ M L  +++ ++ 
Sbjct: 310 IRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKNMIRHYVN 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
           H++E++ RRS   ++   +R  I++G + A   +DE+IA IR+    K        +F+ 
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFAF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T  Q  AIL L L  L  LE    + E   L    ++++ +L++ K+    I  E++E+ 
Sbjct: 429 TAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEIS 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538
           + +      G  R T      A      + +I  E + + +S  G+I+ +   +      
Sbjct: 489 DKY------GDERKTNIIEDDAKSKIDIEELIIVEEVMITLSKDGFIKRIPVKNYIRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-D 595
           +   + ++EGD L+  + ++T D +L+ +  G  Y +   N+     +  GE +  +I  
Sbjct: 543 NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTIIKS 602

Query: 596 LN-HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK-TFLKVSSEEKM 650
           LN  ++ IV       ++       ++  G        +    T  GK   LK+  ++ +
Sbjct: 603 LNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESSLDKFE--TSYGKLQALKLRDKDAL 660

Query: 651 KLVVKVTGDH 660
             V     + 
Sbjct: 661 LNVKLRDREE 670



 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 135/387 (34%), Gaps = 51/387 (13%)

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
               + E L  ++ +    DE I  + + D   P  + RF            ++  SL K
Sbjct: 588 KWKEKGERLDTIIKSLNLEDEKIVEVISVDNFNPNKIFRFITKSG------GIKESSLDK 641

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ--IACEI-----REVKEIFSKSTDLGR 494
            E    K +   L  +   ++  L   ++  +   I  ++      EV E+ +   ++  
Sbjct: 642 FETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVPRNILP 701

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            +     +        +    E     + I+++  ++  K+  VD++             
Sbjct: 702 IQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKI--------- 752

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI-DLNHNQDIVTAFV---YDS 610
              +++  +LL S  G  Y +P   L +       +++   +L   + I+       YD 
Sbjct: 753 ---NSSKTLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYDD 809

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667
              L   S KG       +E   +T+K + F K+ +E+   + V +      ++ ++ + 
Sbjct: 810 NLALYSFSKKGLVKKTLLNEFKLDTQK-QFFYKLKTEDDEVISVDINNITLGNLIIITKK 868

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS---------------DVICFKICEGLTW 711
              + F ++ +  M +   GV   S ++                    VI     + ++ 
Sbjct: 869 GMAIRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSKYLDVNGNTVIISPRSQEISL 928

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGS 738
           I  A    N +  D+   L  R G G+
Sbjct: 929 ISKANEKLNITVEDIK--LQNRAGRGT 953


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/754 (27%), Positives = 369/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI V +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGI-VANQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY        + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGVNMLAVANG-RPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IRNEDKP 413
           +    +     + EI +GL+ A   ID II I                     I+ + K 
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
            + + D +          K+ L     D++ + + +G  + +   +L  G  R  G  I 
Sbjct: 545 DTSTYDRNKDT--ADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHN-QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + + +DIV           KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLND 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            +         +      +     +  R   G  
Sbjct: 722 QDEKEVEVKGKQVALHRLH-----IANRDTKGVK 750


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/754 (28%), Positives = 346/754 (45%), Gaps = 75/754 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     
Sbjct: 15  QVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RY
Sbjct: 75  YMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRY 133

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++
Sbjct: 134 TEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNM 193

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P G  I+  R+ I ++Y  GRG   
Sbjct: 194 ATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGG-GIIIGRQGIRDAYETGRGVVT 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   +  
Sbjct: 253 TRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGT 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       DP  ++  +F  + ++  F +N   L  GR    + L  +L  W+ HRR 
Sbjct: 313 RIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPH-TLGLRSLLDVWIEHRRG 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +      +SRFSL + Q
Sbjct: 372 VIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +    + 
Sbjct: 432 AQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYG 491

Query: 488 KS------TDLGRRRTTFCEVSRADK-----------------------------ATLQQ 512
                    +    R         D                               T + 
Sbjct: 492 TPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEA 551

Query: 513 AMIEKEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             IE EP  + +S  G I  +                  +  D +   + A T     L+
Sbjct: 552 LRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALV 611

Query: 567 STDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLN-----HNQDIVTAFVYDST-- 611
           ++ G+        L         S  G  EA +LL           + ++       T  
Sbjct: 612 TSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVG 671

Query: 612 --------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
                     + + +  G             T    + + +   +++ +      D    
Sbjct: 672 QDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDDRFV 729

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V  +  LL +    +    R   G+      DG
Sbjct: 730 FVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADG 763


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 216/522 (41%), Positives = 307/522 (58%), Gaps = 45/522 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 7   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 66

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 67  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 126

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 127 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 187 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 245

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 246 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 306 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 365 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 424

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 425 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 484

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            ++  +L S  +    I  E+  V+E F        RRT   
Sbjct: 485 AELLRILGSADRLMEVIREELELVREQFGDK-----RRTEIT 521


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/761 (28%), Positives = 390/761 (51%), Gaps = 27/761 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++  + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +  
Sbjct: 2   SVNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEAR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G AT+
Sbjct: 122 YTEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATN 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 IIRACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGI 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  +++E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIV-HRTPTLVNLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  I  R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G  R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ D+IL++++  K   L A  + S   +  GE +   +  + N+ +
Sbjct: 534 LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           +  ++++        +L++ S       +E SE+ I    K  + +K++  + +     +
Sbjct: 594 IAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
              H   +  + +    L+F + +I  ++R  KG+++   K       I      G    
Sbjct: 654 KKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQ 713

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               R  ++  N     L KR    + +     +    L++
Sbjct: 714 LFLERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 207/635 (32%), Positives = 336/635 (52%), Gaps = 22/635 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE++    +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M++MG+       
Sbjct: 15  EEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMNDMGVRPDRGHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132
           K ARIVGEV+GKLHPHGD ++YD+LVR+AQP+  R P+I G GNFG+  GD  AAA RYT
Sbjct: 75  KCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPGGDDPAAAMRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARM   A  +   + ED VDFR  Y+  + EP V P+  PNLL NG +GIAVGMAT++ 
Sbjct: 135 EARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGATGIAVGMATNMA 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  LI +P   ++ L+++I GPD PTGG IV   + I ++Y  GRG F++
Sbjct: 195 PHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIV-GLDGIRDAYETGRGSFKI 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E  GR    IV+TE+P+ +   ++IE++  L+ +K+I  + D++D +       
Sbjct: 254 RATTRIETFGR-RKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLKDLTDRQHGTR 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++        P+ ++E ++ ++ +E  F +N   L  G+ P+ + L  +L+ +L HR +V
Sbjct: 313 LVIEVKNGFVPEAVLEQLYKMTPLEDSFGINNVALVDGQ-PRTLGLKELLEVFLGHRYDV 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RRS FR      R+ ++ GLLIA L+IDE+I +IR  +   + K  ++S F L++ Q 
Sbjct: 372 VRRRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMSVFDLSQPQA 431

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + IL++ LR L K  + +++ E D L A  E +DS+L   +     ++ E+ EV + F  
Sbjct: 432 EYILDMALRRLTKFSKIELEKERDELQATIEYLDSILGDDEMLRKVVSDELGEVAKTFGT 491

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 RRT     +           +  +P   ++S+ G +          +       
Sbjct: 492 P-----RRTVLLASAGTPALEAMSLEVADDPCFAMLSSTGLLARSSDAEPFTTGSARANH 546

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--------GHGEAIQLLIDLNHNQ 600
           D +   + A    +I +L++ G+   L   +L +            G  +  L+ L  ++
Sbjct: 547 DVIVSVVPATARGQIGVLTSRGRLVRLGVLDLPAMPPTHGDPNLSGGLPLSALLSLESDE 606

Query: 601 DIVTAFVYDSTCKLL-VVSSKGNAFIVEESEIIAN 634
             +      +    + + +  G    V    ++  
Sbjct: 607 RALALTTLATDGPGIALGTRLGVVKRVNPEVLLNK 641


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/754 (27%), Positives = 369/754 (48%), Gaps = 51/754 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
                  +++ Y+ YA+S I  RA+PD+RDG KPV RR ++ M E+G+ +   ++KSARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+ +GK HPHGD S+YD++V LAQ F +  PLI G GNFG+I+GD AAA RYTEAR+ +
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 139 VAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + +   L  +D++ VDF   Y+E + EP V P K PNLL NG  GIAVGMATSIP HN  
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +  +A + NP+I+  ++++YI GPDFPTGGI V +++ +   Y  G+G  ++R R  
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGI-VANQDDLAAIYETGQGKIKIRGRIE 253

Query: 258 VEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +E+   G   +V+TEIPY        + +  +  L+ +K    + DI ++S+++   ++ 
Sbjct: 254 IEKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVL 313

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  D + L   ++  + +E  F +NM  ++ G  P+ + L  I++  +  + E+  R
Sbjct: 314 ELKKGADVEALKNLLYKKTKLEDTFGVNMLAVANG-RPETLGLVPIIRHHVNFQYEIAKR 372

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IRNEDKP 413
           +    +     + EI +GL+ A   ID II I                     I+ + K 
Sbjct: 373 KYETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKSKA 432

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              M ++   TE Q  AIL +RL  L  LE   +  E +   A+  +   +L        
Sbjct: 433 SEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAK 492

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            I  E++  ++ ++       RRT   E+   ++A + +  +E   + +++   G+++++
Sbjct: 493 VIMKELKAFRKEYA-----RDRRT---ELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTV 544

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591
            + + D +          K+ L     D++ + + +G  + +   +L  G  R  G  I 
Sbjct: 545 DTSTYDRNKDT--ADAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKGTPID 602

Query: 592 LLIDLNHN-QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            + + + + +DIV           KL+  +      +V+ +E +  TRK     K+  ++
Sbjct: 603 NVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFV-VTRKTSQATKLMDDD 661

Query: 649 KMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKI 705
           ++  V  ++ +   V+  +    L      IPE  +   GVR     ++  ++D+     
Sbjct: 662 ELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLYD 721

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            E         +      +     +  R   G  
Sbjct: 722 QEEKEVEVKGKQVALHRLH-----IANRDTKGVK 750


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/675 (33%), Positives = 366/675 (54%), Gaps = 31/675 (4%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N++   + N+  + +  A+ + Y+ YA+   K+RA+PD+RDG KPVHRRII+    +   
Sbjct: 4   NTSIPEDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGAYMLKAF 63

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSARIVG+++GK HPHGD SVYD++V LAQ F  + P+I G GN+G+ DGDSAA
Sbjct: 64  PERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQDGDSAA 123

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEAR+T +A  +++ +++D V+  D Y+  + EP V P+++PNLL NG  GIAVG+
Sbjct: 124 AMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT+IP HN++E+ EAA A ID  +IS EKL+EYI GPD PTGGII+  R+S++ +Y  G 
Sbjct: 184 ATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIII-GRQSLICAYTTGE 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303
           G   +RA+  +E++  G   IV+TE PY+  K+RL++ I+E+   KR    +  + DIRD
Sbjct: 243 GKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPISDIRD 302

Query: 304 ESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           ES  +    +    +S D      +++ +   +D++     NM  L+ G+ P  + L  I
Sbjct: 303 ESDRNGIRAVIEFKKSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGK-PVTLGLKDI 361

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--- 417
           LK ++ ++++++ RR+   ++    R  I++G + A   +DEII  IR+    K      
Sbjct: 362 LKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDAASNL 421

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + +F  T  Q +AIL L L  L  LE    + E   LL   +K+  +L+S K+    I  
Sbjct: 422 MEKFEFTREQSEAILELMLYRLTGLEIVSFEKEHRELLKIIKKLTKILDSEKEILKVIKK 481

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
           E+ E+ E +      G  R T       +     + ++  E I + IS   +I+ +   S
Sbjct: 482 ELAEIAEKY------GEERKTVIIEEEEEAKIDVKEILVDEDIVITISKEAFIKRISLKS 535

Query: 538 VDLSA-----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAI 590
            + S+     + ++EGD  K  +++ T D I+  +  G  Y +   ++     R  GE +
Sbjct: 536 YNRSSREVKDIEYREGDFNKYVINSSTKDTIMFFTDKGNMYKIKGMDIPEFKWREKGEKL 595

Query: 591 QLLID--LNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           + +I       ++IV  +  D        +  ++       E +  +    K    L++ 
Sbjct: 596 ENIIKGIDLSEENIVAVYSIDDFSSPQDFIFFTNMAGIKRTETNAFVTKYTK-LMALRLK 654

Query: 646 SEEKMKLVVKVTGDH 660
            EE++  V  V  + 
Sbjct: 655 KEEELIDVKLVNRNE 669



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 125/360 (34%), Gaps = 42/360 (11%)

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK- 458
           ++ II  I   ++    + S    +  Q D I    +  +++ E     ++   L+A + 
Sbjct: 595 LENIIKGIDLSEENIVAVYSIDDFSSPQ-DFIFFTNMAGIKRTETNAFVTKYTKLMALRL 653

Query: 459 ---EKIDSL-LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA----TL 510
              E++  + L +  +  N I  E +   +   K  +L                     +
Sbjct: 654 KKEEELIDVKLVNRNESLNFIKVETKIGLKFTVKVPELALEDRNIIANELCSLVKGDKIV 713

Query: 511 QQAMIEK---EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           +  + E+   E   + I+  G I+         S   FK        +  +++  IL+ +
Sbjct: 714 KMDLSEESGYETFYININKSGIIKISN------SGRTFKN-------VFTNSSSNILVFT 760

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFI 625
             G+ +++P+         G  I+ L+ ++  QDI+     +      +   +  G    
Sbjct: 761 VCGRVFSMPSFMFEQIESSGINIRELMGISA-QDILKMISIENFDYGYIYFFTKYGMIKR 819

Query: 626 VEESEIIANTRKG-KTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEMS 682
            E +E       G  T  K  + E   + V+     + + ++ E    + F  D I  M 
Sbjct: 820 TELNEFKDIN--GWNTAHKFKNNEDFLVNVEYGKEKNEILLITEKGMAIKFQGDSINSMG 877

Query: 683 R-GKGVRLQSYKDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +   GV   + K G  S +    + E     L      G        +++  L  RGG G
Sbjct: 878 KSASGVTAINLK-GEDSVIYSMVMEEKANCKLNLTSVKGNKKQIKSKNII--LQNRGGRG 934


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 388/758 (51%), Gaps = 27/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +K
Sbjct: 5   HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP 
Sbjct: 125 ARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG  +        +++ G G F +R
Sbjct: 185 HNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGE-IHDLNGCANAHKTGEGKFIIR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES      ++
Sbjct: 244 ACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISII 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + +   ++  +++E  +      +   R P ++ L   L   + H  +V+ 
Sbjct: 304 IDTKKDINLENVKNYLYKKTNLEISYNTKFIAIV-HRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           +   + +  I  R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +A
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E K+ F    
Sbjct: 423 IIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
             G  R T            +  MIEK+ + +VIS  G+I+++   S + S    L  K 
Sbjct: 479 --GFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKT 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L      ++ D+IL++++  K   L A  + S   +  GE +   +  + N+ ++  
Sbjct: 537 NDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAV 596

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           ++++        +L++ S       +E SE+ I    K  + +K++  + +     +   
Sbjct: 597 YIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKG 656

Query: 660 H---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           H   +  + +    L+F + +I  ++R  KG+++   K       I      G       
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFL 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            R  ++  N     L KR    + +     +    L++
Sbjct: 717 ERG-SKCFNISELKLSKRATTPTNLYPITKKVQNVLAA 753


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 245/765 (32%), Positives = 398/765 (52%), Gaps = 60/765 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EEN+        ++  Y  Y++S I  RA+PD+RDG KPV RRI++AM+E+GL     
Sbjct: 2   VTEENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQ 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            +KSARIVG+ +GK HPHGD S+YD+LV +A+ +    PL+ G GNFG+IDGDSAAA RY
Sbjct: 62  HRKSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+++ A  +L G+D + VDF   ++E + EPV+ P+K P LL NGT+GIAVGMAT+I
Sbjct: 122 TEARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN  EI + A+AL+DNPE++ EKL++YI GPDFPTGGI + + + I   Y  G G  R
Sbjct: 182 PPHNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGI-IANADEIANIYENGEGRLR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR ++ +E+   G   IV+TEIP+     KSRL+E +  L+  K    + D+RDES+ DV
Sbjct: 241 VRGKYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSSDV 300

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           RIV+  K    + + L+  IF  + +E  + +NM  +   + P++  L GIL+E+L    
Sbjct: 301 RIVVEVKK-GRNVENLLNGIFKKTPLEDTYSVNMLAVRDKQ-PKIFSLKGILEEFLGFEE 358

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---------------------IR 408
           E+  +  +  ++    R E+++GL+ A   ID II +                     I+
Sbjct: 359 ELYTKEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLVNGNIAEIK 418

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            + +        F  TE Q DAIL + L  L  LE  ++ +E +NL    E+ + +L+  
Sbjct: 419 FKSEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKILSDK 478

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
            +    I  +++   + F K      RRT      +     +    +++E + V+I   G
Sbjct: 479 TELHRVIKTDLKANVKNFEKP-----RRTELLNEEKQ----VYVEEVKEEDVYVLIDRFG 529

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIA---LHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583
           + +     SVD+S++     ++L      +    TDRI + +  G  + + A ++     
Sbjct: 530 YAK-----SVDVSSISKANEEALNEYPTKIMMKNTDRICIFTASGNMHQVKAKDIPKVRL 584

Query: 584 RGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           R  G  +  +  +   + I+ T+F       +   + KG   +V   E   N R      
Sbjct: 585 RDKGTLVHNISKVGKEEIILYTSFAELFESMVFFATRKGFVKLVSGVEFDTN-RSVMLAT 643

Query: 643 KVSSEEKMKLVVKVTGDHVA-------VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
           K+   +++  V  ++   +        ++ + +  L + +D++ EM + G+GV+  S  +
Sbjct: 644 KLEEGDELLSVRVLSAAEILSHDLRVYMLTKKKIGLSYLLDEVVEMKKSGRGVKGISLAE 703

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                 +  +I    T ++  G SY  ++  L     KR   G  
Sbjct: 704 DDEVKGVAVEIS-ATTEVEFDGDSYKVAKFKLK----KRAAKGDK 743


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 388/758 (51%), Gaps = 27/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +K
Sbjct: 5   HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP 
Sbjct: 125 ARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG  +        +++ G G F +R
Sbjct: 185 HNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGE-IHDLNGCANAHKTGEGKFIIR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES      ++
Sbjct: 244 ACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISII 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + +   ++  +++E  +      +   R P ++ L   L   + H  +V+ 
Sbjct: 304 IDTKKDINLENVKNYLYKKTNLEISYNTKFIAIV-HRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           +   + +  I  R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +A
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E K+ F    
Sbjct: 423 IIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIEFKKTF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
             G  R T            +  MIEK+ + +VIS  G+I+++   S + S    L  K 
Sbjct: 479 --GFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKT 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L      ++ D+IL++++  K   L A  + S   +  GE +   +  + N+ ++  
Sbjct: 537 NDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAV 596

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           ++++        +L++ S       +E SE+ I    K  + +K++  + +     +   
Sbjct: 597 YIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKG 656

Query: 660 H---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           H   +  + +    L+F + +I  ++R  KG+++   K       I      G       
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFL 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            R  ++  N     L KR    + +     +    L++
Sbjct: 717 ERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/763 (28%), Positives = 372/763 (48%), Gaps = 54/763 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + + +        +++ ++ Y++S I  RA+PD+RDG KPV RR ++ M E+ +D+   +
Sbjct: 1   MAQEIIRTEYSEIMQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  KKSARIVGDTMGKYHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +VA+ +    +D++ VDF   Y+E + EP V P + PNLL NG+ GIAVGM TSI
Sbjct: 121 EARLAKVAQEVYLGDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +  +A + NP+IS  ++++ I GPDFPTGGI V +++ ++E Y  G G  +
Sbjct: 181 PQHNLGEVVDGVIAYMKNPDISTPEMMQIIPGPDFPTGGI-VTNKDDLLEIYSTGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +  +E++  G   IV+TEIPY        + +  I  L+  K+   + DI ++S  +
Sbjct: 240 IRGKAEIEKLKGGKEQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  D   ++  ++  + +E  F +NM  ++ G+ P+ + +  I++  +  +
Sbjct: 300 QMRIIVELRKGADAQNVLNLLYKKTRLEDTFGVNMLAVADGK-PETLGIVPIIRHHVDFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS------ 422
            E+  R+ +  +     + EI +GL+ A   ID II I+R     K              
Sbjct: 359 YELCTRKYNHLLGKEQEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGI 418

Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                           TE Q  AIL++RL  L  LE   ++ +    L +  K   +L S
Sbjct: 419 KFKSQKSKADAEQLHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTKILGS 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
             +    I  +++ +K+ ++      R R T  +    ++A +++  IE   + V+I   
Sbjct: 479 RAEMAKVIIKDLQAIKKEYA------RERRTVID--NVEEAVVEEKPIEVIDVAVLIDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
            + R +   + + +          K  +    TD+I L +  G  +T+   +L  G  R 
Sbjct: 531 AYARVVDMPTYERNKEA--AETESKKIVFCKNTDKICLFTEKGDMHTIKVLSLPFGKFRD 588

Query: 586 HGEAIQLL-----IDLNHNQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            G+ I        IDL     I   A       KL+  + +    +V+ SE    +RK  
Sbjct: 589 KGQPIDTAEKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEFD-VSRKTI 647

Query: 640 TFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG 696
              K++ ++++  V  +  GD V +       L    D IPE  +   GVR     K   
Sbjct: 648 AATKLNDKDEVICVKIINPGDTVVMQSAKDMFLRIEGDTIPEKKKTAAGVRGIKLAKGDE 707

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           ++++      + +       +  ++        +G R   G  
Sbjct: 708 LTNIYVLAEGDSIEV-----KVKDKEVALNRLHIGTRDTKGVK 745


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/758 (28%), Positives = 388/758 (51%), Gaps = 27/758 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+ +   +K
Sbjct: 5   HQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G AT+IP 
Sbjct: 125 ARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A +  ID+P+ S+EKL+E    PDFPTGG  +        +++ G G F +R
Sbjct: 185 HNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGE-IHDLNGCANAHKTGEGKFIIR 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A    +        I+++ IPY+  K+ +I++I ++I  K +  L ++RDES      ++
Sbjct: 244 ACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISII 303

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + ++ + +   ++  +++E  +      +   R P ++ L   L   + H  +V+ 
Sbjct: 304 IDTKKDINLENVKNYLYKKTNLEISYNTKFIAIV-HRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430
           +   + +  I  R+EI++GL+     IDEII IIR  +     K  ++  F+ T NQ +A
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQVFNFTNNQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I+ +RL +L + + + +K+E   L  E + +   +NS + + N +  ++ E K+ F    
Sbjct: 423 IIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQKRINSLQVRKNYLKQKMIEFKKTF---- 478

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKE 547
             G  R T            +  MIEK+ + +VIS  G+I+++   S + S    L  K 
Sbjct: 479 --GFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELGLKT 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
            D L      ++ D+IL++++  K   L A  + S   +  GE +   +  + N+ ++  
Sbjct: 537 NDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFDANEKVIAV 596

Query: 606 FVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           ++++        +L++ S       +E SE+ I    K  + +K++  + +     +   
Sbjct: 597 YIWNEQFKIDEYQLVLASRLNLIKRIELSELDINKNSKQISIMKLNDNDNLISANLIKKG 656

Query: 660 H---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           H   +  + +    L+F + +I  ++R  KG+++   K       I      G       
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAILITPNNGYNVQLFL 716

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            R  ++  N     L KR    + +     +    L++
Sbjct: 717 ERG-SKCFNISELKLSKRAATPTNLYPITKKVQNVLAA 753


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/754 (28%), Positives = 346/754 (45%), Gaps = 75/754 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     
Sbjct: 15  QVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RY
Sbjct: 75  YMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRY 133

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++
Sbjct: 134 TEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNM 193

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P G  I+  R+ I ++Y  GRG   
Sbjct: 194 ATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGG-GIIIGRQGIRDAYETGRGVVT 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   +  
Sbjct: 253 TRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGT 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       DP  ++  +F  + ++  F +N   L  GR    + L  +L  W+ HRR 
Sbjct: 313 RIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPH-TLGLRSLLDVWIEHRRG 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +      +SRFSL + Q
Sbjct: 372 VIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +    + 
Sbjct: 432 AQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYG 491

Query: 488 KS------TDLGRRRTTFCEVSRADK-----------------------------ATLQQ 512
                    +    R         D                               T + 
Sbjct: 492 TPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEA 551

Query: 513 AMIEKEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             IE EP  + +S  G I  +                  +  D +   + A T     L+
Sbjct: 552 LRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALV 611

Query: 567 STDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLN-----HNQDIVTAFVYDST-- 611
           ++ G+        L         S  G  EA +LL           + ++       T  
Sbjct: 612 TSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVG 671

Query: 612 --------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
                     + + +  G             T    + + +   +++ +      D    
Sbjct: 672 QDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDDRFV 729

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V  +  LL +    +    R   G+      DG
Sbjct: 730 FVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADG 763


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/777 (28%), Positives = 379/777 (48%), Gaps = 67/777 (8%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM+E+GL++    
Sbjct: 1   MAETILKTEYSDVMQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDAMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ +  + +  + +D+D VDF   ++E + EP V P + PNLL NG  GIAVGM TSI
Sbjct: 121 EARLKKFTQDVYLKDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+     A +DN +I+  +L+EYI GPDFPTGGI++ ++  + + Y  G G  +
Sbjct: 181 PTHNLTEVINGVEAYLDNEDITTAELMEYIPGPDFPTGGIVI-NKSELADIYESGVGKVK 239

Query: 252 VRARWCVEEVGR--GSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           VR +   E   +      +V+TEIPY        + I  + +LI  K+   + DI +ES+
Sbjct: 240 VRGKVVFEPGKKKTDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    ++ D   L   ++  + +E  F +NM  ++ G  P+V+ L  I++  + 
Sbjct: 300 KEGIRIVLELKKNADVKKLEHLLYKKTKLEDTFGVNMLTIADG-RPEVLGLRDIIRYNVE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-------------------- 406
            + E+  R+ +  ++      EI +GL+ A   ID II I                    
Sbjct: 359 FQYEINTRKYTTLLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTE 418

Query: 407 -IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            IR +         +   TE Q  AIL LRL  L  LE   ++ E +  LA   + + +L
Sbjct: 419 GIRFKSDKSEKDAKKLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEYEEIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S K     I  ++  +K+ +      G  R T  E    + A  ++    ++ +  ++ 
Sbjct: 479 GSKKVMKKTIKKDLERIKKEY------GMERLTVIE--DGEVAVYEEPKFVEQEVVFIMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
             G+ +++ + S + +       +  K       T++I + + +G  + +   N+     
Sbjct: 531 RFGYAKTIDTASFERNKETIYAEN--KYVFKCLNTEKICIFTDNGNLHQVKVVNIPFTKF 588

Query: 584 RGHGEAIQLLIDLNH-NQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           R  G  I  L + N   ++I+           K L V+ +G   +V+ SE  A ++K   
Sbjct: 589 RDKGTPIDNLGNYNSAGEEIIYLCASKQLEGRKFLFVTKQGMMKLVDGSEFDA-SKKTVA 647

Query: 641 FLKVSSEEKMKLVVKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
             K++  + + ++                      V +  EN   L F +++IPE  +  
Sbjct: 648 STKLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEIPEKKKSA 707

Query: 685 KGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            GVR     K+  I++V        ++ ID  G+  +  +        KR G G+ +
Sbjct: 708 AGVRGIKLEKEDKIAEVYLIPENADIS-IDYKGKEVSLKKL----KTAKRDGKGTKL 759


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/687 (32%), Positives = 384/687 (55%), Gaps = 32/687 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +L+ ++ 
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ EVK
Sbjct: 428 TDVQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILNSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT+  E     K  +++ ++E++ + + +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTSIIEDDEKAKIDIEEIIVEEDVV-LTLSNEGFAKRISLKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVRLDEIIKT 601

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMALKLKKGEFLVK 660

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQ 677
              V  T +      + +K L F+I++
Sbjct: 661 ADLVDRTREEKFFNIKTQKGLSFNIEE 687



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/483 (11%), Positives = 142/483 (29%), Gaps = 28/483 (5%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +++    EL+   +  L+E     + +    ++    ++      +     +    +  
Sbjct: 466 KKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVLTLSNE 525

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRR---EVLFRRSSFRMQAIDRRVEIL------ 390
                +           ++ I        R   +   + +   +       +I       
Sbjct: 526 GFAKRISLKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPE 585

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                  + +DEII  I   +             +  +  I +     ++K    +  + 
Sbjct: 586 FKWKEKGVRLDEIIKTIDLSETIMEAFSIEDFTAQKDMLFITDS--GYIKKTTLDKFNTN 643

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              ++A K K    L            +   +K     S ++        + +       
Sbjct: 644 YTKIMALKLKKGEFLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVDRNIIGYKLF 703

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVD--LSALHFKEGDSLKIALHAHTTDRILLLST 568
                +         N  +     + S +  ++    K+  S        +   ++L   
Sbjct: 704 DILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSK-ILVLFDD 762

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNA 623
           +GKAY +PA  L S +  G  I           I     ++ F ++    +   S KG  
Sbjct: 763 EGKAYYIPAFMLQSIKEEGINISAF----TGDKISLLNAISTFRFEEDISIYFSSEKGLI 818

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPE 680
                SE+       + +     E+K+  ++        ++ ++ E   ++ F  + +  
Sbjct: 819 KRTLLSELKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNP 878

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WLGKRGGVGS 738
           M +   GV   S KD     +           I    ++ ++   ++    +  R G+G+
Sbjct: 879 MGKMASGVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKVQNRAGIGN 938

Query: 739 LVP 741
            + 
Sbjct: 939 SLM 941


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 218/762 (28%), Positives = 361/762 (47%), Gaps = 52/762 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +   A IDNPE+  E+LL ++ GPDFPTGGI + +++ +   Y  G G  ++
Sbjct: 181 PHNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGI-IANKKDLASIYETGSGKIKL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           RA+  VE  +       +V+TEIPY       ++ +  IAEL+ +K++  + DI ++S +
Sbjct: 240 RAKMEVELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  + +NM  +  G  P+ + L GILK +L  
Sbjct: 300 EGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKG-RPETLNLRGILKNYLDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
           + E   R+    ++    + EI +GL+ A   ID IIA++R     K             
Sbjct: 359 QYENNTRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTSA 418

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L+
Sbjct: 419 IRFKTPELEEDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKILS 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   I  ++  +K  F+        R T  E     +A   ++ +E   +  V+  
Sbjct: 479 DKGTMDQVIKEDLAAIKREFACP------RRTLIE--DGKEAVYDESAVEVREVVFVMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ R +   + D +    +  +     +    TDRI L +  G  + +   ++  G  R
Sbjct: 531 FGYSRIVDRSTYDRNRETIENENP--HVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G  I  L   +      T FV +++       L  +       V   E   N R    
Sbjct: 589 DKGTPIDNLCKFD-GTKEQTVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNR-MVA 646

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K+   + +  V        V +  +N   L F++D+I    +  +GVR      G   
Sbjct: 647 ATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEAL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +        + I    +  + +        G+R G G+ V
Sbjct: 707 EQVYLLGANTESVITYKEKQVHLNRL----KQGRRDGKGNKV 744


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/790 (29%), Positives = 391/790 (49%), Gaps = 63/790 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + EE V+ ++L   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAEERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   L     +D VDF   ++    EP V P++ P LL NG +GIAVGMATS
Sbjct: 121 TETRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ +  +AL+  P++S +KLL  I GPDFPTGG ++     + ++Y  GRG  
Sbjct: 181 IPPHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLG-SGVRDTYLRGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 PMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   V+    R  DP+ ++  +   + +++ F   +  L  G+  Q+     +   +L
Sbjct: 300 DREGMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQT-FL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            +R   + RR++  ++  + R+E+++GL+ A  ++  +IA+I+        +  ++    
Sbjct: 359 EYRELTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLMVHLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LTE Q DA+L + LR L  LE+  +++E   L  E+E++  LL    Q  + +  E++++
Sbjct: 419 LTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERERLQLLLQERDQLLDAMVQELKQL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F+       RRT   E      A           +              ++I N G 
Sbjct: 479 KKRFATP-----RRTRLIEGGDHLLAEKAANQRPNAELQRRQALGALPSDGRLLIQNDGQ 533

Query: 530 IRSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLP---AGN 579
           ++ +    +    LH  E    GD     ++ L      R+L+L+  G+   L    AG 
Sbjct: 534 VKVVSPQLLGR--LHLNEAVGLGDEPSPAQLILPIQPAPRLLVLTASGRMALLRWEFAGQ 591

Query: 580 LLSGRGH-------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
              G          G+ +  L+ L    D  T    ++   L ++S+ G    +   ++ 
Sbjct: 592 QPGGLERFLPTALEGDPVVSLLRLPAADDAST----NTRLSLGLLSTDGRFKRLPLDDVQ 647

Query: 633 ANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR-GKG-V 687
             + +  T LK+      +  V+   G  V ++ +  ++L   +  D +P M +  +G +
Sbjct: 648 ELSGRAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPVQDDNLPLMGKLAQGPM 707

Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP----KG 743
            ++      +   +  +   G   +  +     R  +       KRG +G +      KG
Sbjct: 708 TMRMLPGETLVGAVS-QSAGGENLLVGSRNGALRRLSLSSLRRCKRGDLGEMAITLQGKG 766

Query: 744 FPRSGKFLSS 753
              + + +S+
Sbjct: 767 ND-ADRLVSA 775



 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 19/162 (11%)

Query: 524 ISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           +S  G  + L    V        + L  K+G SL  A+       + L+S  G+   LP 
Sbjct: 632 LSTDGRFKRLPLDDVQELSGRAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPV 691

Query: 578 GN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVEESEII 632
            +    L+     G     ++     + +V A    +    LLV S  G    +  S + 
Sbjct: 692 QDDNLPLMGKLAQGPMTMRMLP---GETLVGAVSQSAGGENLLVGSRNGALRRLSLSSLR 748

Query: 633 ANTRK--GKTFLKV--SSEEKMKLVVKVT-GDHVAVVGENRK 669
              R   G+  + +     +  +LV   T  D V VV    +
Sbjct: 749 RCKRGDLGEMAITLQGKGNDADRLVSACTCADLVGVVTSKGR 790


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/703 (32%), Positives = 375/703 (53%), Gaps = 40/703 (5%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   NI   N   + N+   S+   + + YL YA+   KERA+PD+RDG KPVHRRI++ 
Sbjct: 1   MAKKNI---NIPKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGDSAAA RYTEAR+T  A  +L+ +D++ VD  + Y++ + EP V P++FPNLL NG 
Sbjct: 118 IDGDSAAAMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+AT+IP HN++E  +  +A IDN +IS ++L+ YI GPD PTGGI++   ++++
Sbjct: 178 FGIAVGLATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILI-GEKALL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E++    + IV+TE PY+  KS++++ I+E+   K+    + 
Sbjct: 237 SAYEKGEGRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALD 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES  +    +    +S +    + +++ +F  ++++     NM  ++ G+ P+
Sbjct: 297 AISDIRDESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGK-PK 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + L  ILK ++ H+++V+ RR+   ++  ++R  I++G + A   +DEI+  IR     
Sbjct: 356 TLGLKAILKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSK 415

Query: 414 K---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K     +V++F  +  Q +AI+ L L  L  LE    + E   L      +  +LNS K+
Sbjct: 416 KDSEENLVNKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYKELQRRINALTKILNSEKE 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  I  E+ EVKE +      G  R T             + +I  E + + ISN G+I
Sbjct: 476 LFKVIKKELNEVKENY------GDERRTNIIHDDEKAKIDIEELILDEDVIITISNEGYI 529

Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                +  K  +  +  + ++EGD  K  L  +T   +++ + +G  Y L   N+     
Sbjct: 530 KRVSEKYYKRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQLRIVNIAEMKW 589

Query: 584 RGHGEAIQLLI---DLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE +  LI   DL   + I    + +       +  S +G        +   N  K 
Sbjct: 590 KEKGERLDNLIKTLDLEKEKLINFYVIEELNSHKNFIFFSDRGMMKKSSLDKFKTNYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQ 677
              LK+   EK+  V     +     + V  +N   L F++ +
Sbjct: 649 LLALKLKENEKLINVKLADNNRKEQYIKVQTKNG--LKFTVGE 689



 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 110/334 (32%), Gaps = 39/334 (11%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE-VKEIFSKSTDL 492
           ++  SL K +    K     L   ++ I+  L    ++   I  + +  +K    +    
Sbjct: 634 MKKSSLDKFKTNYSKLLALKLKENEKLINVKLADNNRKEQYIKVQTKNGLKFTVGEPRLE 693

Query: 493 GRRRTTF------CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
              R                K        E +   V I+N+G I+  K  +      +FK
Sbjct: 694 NSDRNVMGNQLFNLSAEDKVKEISYTDEFEIKNFAVNINNKGKIKVSKKVNYK----NFK 749

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL--NHNQDIVT 604
                    +A++   I++    G  + LPA  + +   +G  +  LID    + + IV 
Sbjct: 750 G-------CYANSLSNIIIFGDKGSVFLLPAYLIENIDNNGVKLSNLIDEFNENEESIVN 802

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658
            F    ++       +S  G       +E   N    K +     ++K+  V+K      
Sbjct: 803 IFAITEFNDEESFYFISENGYVKKTMLNEFQGNYSYTKGYKLKDKDDKLINVLKKDNKLE 862

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAG 716
             + ++ +    + F  D I  M +   GV   S  +D  +       + +    I   G
Sbjct: 863 KDILLITKKDMRIRFDSDSINPMGKIASGVTGISLSEDDKVIFGEFIYLEDNDDKIKVYG 922

Query: 717 RSYNRS----ENDLLGWL-------GKRGGVGSL 739
            + N+     E+D    +         R G G  
Sbjct: 923 ETKNKLEVMYEDDSEEVVILKGINNQNRAGKGKK 956


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/788 (27%), Positives = 366/788 (46%), Gaps = 83/788 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RA+PD+RDG KPV RR+++AM  +GL++    
Sbjct: 1   MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EA++ +  + +    +D++ VDF   ++E + EP V P + PNLL NG  GIAVGM T+I
Sbjct: 121 EAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +DN +I+ ++L++   GPDFPTGGI++ ++  +   Y  G G  +
Sbjct: 181 PPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVI-NKSELGAIYETGTGKIK 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E          +V+TEIPY        + I  +  LI  K+   + DI +ES+
Sbjct: 240 LRGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++   ++    ++ D   L   ++  + +E  F +NM  +  G  P+ + +  I+K  + 
Sbjct: 300 KEGIRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDG-RPETLGIKDIIKHHIN 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-------------------- 406
            + E+  R+ +  ++      EI +GL+ A   ID II I                    
Sbjct: 359 FQYELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVE 418

Query: 407 -IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            I+ + +      +    TE Q  AIL +RL  L  LE   ++ E D  + + EK + +L
Sbjct: 419 GIKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYEKIL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S K+    I  ++  +K+ +      G  R T  E    + A  ++  I +  +  ++ 
Sbjct: 479 GSRKEMAKVIKADLLNIKKEY------GVERRTVIE--DGEAAVFEEKKIPEMEVMFIMD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSL----KIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
             G+ R++   + +      +  D++    K  +    TD+I + +  G  + L   +L 
Sbjct: 531 RFGYARTIDMAAFE------RNKDAVFNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLP 584

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTR 636
               R  G  I  L + + +++I+            K+L V+ +G   +V+  E     R
Sbjct: 585 FTKFRDKGTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKR 644

Query: 637 KGKTFLKVSSEEKMKLVVKVT-----------------------GDHVAVVGENRKLLIF 673
                 K++ ++K+  +                             +V V  EN   L F
Sbjct: 645 T-VACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKF 703

Query: 674 SIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +  IP   +   GVR     KD  I DV      +  T          +S +       
Sbjct: 704 PLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDEFTM-----EYKGKSISFAKMKTA 758

Query: 732 KRGGVGSL 739
            R   G+ 
Sbjct: 759 HRDTKGTK 766


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/760 (30%), Positives = 396/760 (52%), Gaps = 36/760 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +VEE +++++L   ++  YL YA+S I  RA+PD+RDG KPV RRI++AM E+ L    A
Sbjct: 1   MVEERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHA 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVRLAQ F  R+PL+ G GNFG++D D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A   +L  +    V+F   ++    EP+V P++ P LL NG SGIAVGMATS
Sbjct: 121 TEIRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P HN+ EI  A +A+I  P +S + LL+ I GPDFPTGG ++ ++  I E+Y  GRG  
Sbjct: 181 VPPHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINK-GIQETYLEGRGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV         + +V+TE+PYQ+ K+  IEK+AE +   +I  + DIRDES
Sbjct: 240 TMRGVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  +P+ ++  +   +  +T F   +  L  G+  Q + L  +L+ +L
Sbjct: 300 DRDGTRLVVELRKDTEPEKVLSILERRTSFKTNFSSIILALVDGQPVQ-LNLRQLLEHFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422
           ++R   + RR+ + ++  + R+E+++GLL A  ++  I+ II+        K  +   F 
Sbjct: 359 SYREITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQALTESSNAKLNLRVHFD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L++ Q DAILN+ LR L   E+  +  E ++L  +++K+++LL   +   + I  E++ +
Sbjct: 419 LSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKKLNNLLKKREALLSTIMNELKNL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT--VVISNRGWIRSLKSH---- 536
           K+ F+       R  +F  ++ +   + Q+ ++E  P T  ++IS+ G ++ +       
Sbjct: 479 KKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPKTNQLIISHDGQVQIIAPQLINH 538

Query: 537 -SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP-AGNLLSGRGHGEAIQLLI 594
             ++ +          ++ L       IL+ S+ G+   L         R   E +   +
Sbjct: 539 LHLEATLTSGHHPSPPQLLLPISQHPSILIFSSSGRVGLLRWEFAEQQPRNISEFLPNSL 598

Query: 595 DLNHNQDIVTAFVYDSTCKLL-------VVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                  ++     +    L+       ++SS G+   +   E    + +  T L++   
Sbjct: 599 L---GDQVIQILPLNLEANLIPSVSSIGLLSSDGHFKRLPIEEFHDLSGRAVTILRLKEG 655

Query: 648 EKMKLVVKVTGDHVAVVGEN-RKLL--IFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVIC 702
             +  VV+   +   ++G +  +LL      + +P M R  +G  L     G  +    C
Sbjct: 656 VSLLRVVECFENEELIIGSSLGRLLKIRIQTNILPMMKRTAQGTLLLKLLPGETVIGATC 715

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            K    L    + G+    + + L  +  +R  +G +  +
Sbjct: 716 IKEEGSLMLATTKGQIKRLNSSSLRSF--ERCQLGQIGLR 753


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/754 (28%), Positives = 346/754 (45%), Gaps = 75/754 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            VEE++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M +M L     
Sbjct: 15  QVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RY
Sbjct: 75  YMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRY 133

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   A  +   +DED VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++
Sbjct: 134 TEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNM 193

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            +HN+ E+  AA  ++ +P+ +++ L++Y+ GPD+P G  I+  R+ I ++Y  GRG   
Sbjct: 194 ATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGG-GIIIGRQGIRDAYETGRGVVT 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            R+   VE +      IVVT++PY V   R++E+I+E +   ++  +    D +   +  
Sbjct: 253 TRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGT 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       DP  ++  +F  + ++  F +N   L  GR    + L  +L  W+ HRR 
Sbjct: 313 RIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPH-TLGLRSLLDVWIEHRRG 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQ 427
           V+ RRS FR Q    R+ +++GLL+A ++IDE+I +IR+ D  +      +SRFSL + Q
Sbjct: 372 VIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L K+   +++SE D L +   +++ +L S       +  E+ +    + 
Sbjct: 432 AQYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYG 491

Query: 488 KS------TDLGRRRTTFCEVSRADK-----------------------------ATLQQ 512
                    +    R         D                               T + 
Sbjct: 492 TPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEA 551

Query: 513 AMIEKEPITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             IE EP  + +S  G I  +                  +  D +   + A T     L+
Sbjct: 552 LRIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALV 611

Query: 567 STDGKAYTLPAGNLL--------SGRGHGEAIQLLIDLN-----HNQDIVTAFVYDST-- 611
           ++ G+        L         S  G  EA +LL           + ++       T  
Sbjct: 612 TSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVG 671

Query: 612 --------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
                     + + +  G             T    + + +   +++ +      D    
Sbjct: 672 QDDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHDDDRFV 729

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            V  +  LL +    +    R   G+      DG
Sbjct: 730 FVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADG 763


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/506 (40%), Positives = 317/506 (62%), Gaps = 14/506 (2%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRRI+++M E+GL     ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
            F  RY L+ G GNFG++DGD+AAA RYTEA+M ++A  +L+ +++D V+F   ++ E+ 
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP V PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  + LIDNPE +I +L+  I G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTG  I+  +  I  +Y  G+G   VRA+  +EE       I+VTEIPYQV K++LI
Sbjct: 181 PDFPTGATIM-GKSGIRAAYETGKGRVIVRAKAEIEEE-NNRHRIIVTEIPYQVNKAKLI 238

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E IA+L+  K+I  + D+RDES  +   ++    +  +P++++  ++  + M+  F + M
Sbjct: 239 ENIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIM 298

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L     PQV+ +  +L  +++ ++EV+ RR++F +   + R  IL+GL IA  NIDE+
Sbjct: 299 LALVNNE-PQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEV 357

Query: 404 IAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I+IIR        +  ++ RF+L+E Q  AIL +RLR L  LE  +I+ E   L+   + 
Sbjct: 358 ISIIRGSKTSEIARNTLMERFNLSEKQSTAILEMRLRRLTGLERDKIEEEYAELMKLIDY 417

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++S+L S ++    I  E+ ++K  +      G  R T  E    +     + +I++E +
Sbjct: 418 LNSILASEEKLLGVIKDELLQIKTKY------GDERRTSIEKVVNEIDI--EDLIQEEEV 469

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFK 546
            V +++ G+I+ + + +        K
Sbjct: 470 VVTLTHTGYIKRISADTYSAQKRGGK 495


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 216/762 (28%), Positives = 365/762 (47%), Gaps = 52/762 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A IDNPE + ++LL+ + GPDFPTGGI + ++  ++  Y  G G  ++
Sbjct: 181 PHNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGI-IANKSDLLNIYETGSGRIKL 239

Query: 253 RARWCVEEVGR--GSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           RA+  VE   R      ++++EIPY       ++ +  IA+L+ +K++  + DI ++S +
Sbjct: 240 RAKLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  F +NM  +  G  P+ + L GILK +L  
Sbjct: 300 EGIRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAI-AGGRPETLTLKGILKNYLDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E   R+ +  ++    + EI +GL+ A   ID IIAI+R     K             
Sbjct: 359 QYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLMEGDISN 418

Query: 423 ----------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L+
Sbjct: 419 IHFKTPGFDEDARKLRFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEYEKILS 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S     + I  ++ E+K  F+        R T  E     +A   +  +E   +  V+  
Sbjct: 479 SKLTMDDVIKKDLEEIKAEFATP------RRTLIE--DGKEAVYDETAVEIREVVFVMDK 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584
            G+ + +   + D +    +  +     +    TD+I L +  G  + + A ++  G  R
Sbjct: 531 FGYGKLVDRATYDRNQETIEGENP--HVIPCLNTDKICLFTDTGLLHQVKASDIPFGKMR 588

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKT 640
             G  +  L   +        F+ +++     +LL  +      +V   E   N R    
Sbjct: 589 DKGTPVDNLCKFD-GTKERPIFIINASALVGRRLLFATKGAMVKLVPGEEFETNNR-MVA 646

Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
             K+   + +  +    G     +   N   L F +++I  + +  KGVR      G   
Sbjct: 647 ATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 706

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + +     +    +    +  + +       +GKR G GS V
Sbjct: 707 EQVYLLGTDSEQTVMYKEKQVHLNRL----KIGKRDGKGSKV 744


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/718 (28%), Positives = 381/718 (53%), Gaps = 25/718 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKKS
Sbjct: 15  KIVQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTEAR
Sbjct: 75  ARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEAR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A+ ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P HN
Sbjct: 135 LSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +AA+A I NP I + K+ + I GPDFPTGG+ +   + I E++  G+G   + +R
Sbjct: 195 LNEILDAAIAKIKNPAIELSKIAKIIQGPDFPTGGV-IYGTDGIHEAFERGKGRITLASR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L  
Sbjct: 254 YNVYSDNKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILIT 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            +++++ ++++  +F+ + M   +  N NV+     P+ M +  +L  +L H ++V  + 
Sbjct: 313 LDKNVNENVIVNYLFLKTQMRIYYNYN-NVVIDNHTPKTMGISALLDAYLKHVKDVKVKT 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQVDAI 431
             F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ  AI
Sbjct: 372 IEFDLIKYKTRLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATAI 431

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             LRL  L K +E+    E   L  + ++ + LL +  +  N +    R++K  F     
Sbjct: 432 AELRLYKLSKTDEHTFILEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHKF----- 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
            GR R T  E+ + + +  Q+ +++ E + + IS  G+I+ +   + +   ++    KE 
Sbjct: 487 -GRIRRTSIEIEQINSSVNQEDLVKDEEVFLGISKFGYIKKVSKKTYESNLITTYGIKED 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D++     A + D++LL +  G    LP   +   +    G  +   +DL+  ++IV+  
Sbjct: 546 DNILFYDLASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVI 605

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +D T  + + + KG    V   +  ++   K    +K+ +++++       G   V
Sbjct: 606 KVSDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFMAMKLKNDDELISAKLSNGLKDV 665

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            ++ +N    ++S + +P    +  G +      G  +      K  + +  +  + +
Sbjct: 666 LLITKNNFASLYSENDVPIYGLKSNGNKACYLASGDELVSFTVVKPNDSVALVSQSNK 723


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/769 (29%), Positives = 375/769 (48%), Gaps = 60/769 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L+   + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA  LI++P+ +++KL+E++ GPD PTG  ++   + +  +Y  GRG  R+R R
Sbjct: 201 LGEVVQAARWLINHPDATLDKLMEFVPGPDLPTG-GLLLGLDEVRRAYETGRGVVRMRGR 259

Query: 256 WCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAE-DVRI 311
             +   E  RG   I VTE+PY V   ++I  I   +   + +  + D++D +   +   
Sbjct: 260 VEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L  +LAHR EV
Sbjct: 320 LVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKELLDVFLAHRYEV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRSS+R +  + R+ ++ GLLIA L+ID ++ +IR  +     K  ++ RF L+E Q 
Sbjct: 379 VTRRSSYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQRFKLSEIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++  +L+  K     ++ E+  V + F  
Sbjct: 439 TYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGA 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSATGLVARTAAESEEAAEAR 553

Query: 545 FKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQ 591
            + G    D+++  +H+    R+LL+++ G+A+ +    L          S RG G +  
Sbjct: 554 RRSGRVKHDAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRG-GMSAA 612

Query: 592 LLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTF 641
            L+ L   + +V       + +    L + +  G   +      V   E           
Sbjct: 613 ELVPLEPGETVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPDWPVRSDEFE--------V 664

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
           + +   +++     +T   + +A V     LL F+   +     +G G+   +   G  +
Sbjct: 665 ISLRDGDEVIGATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARA 724

Query: 699 DVICFKICEGL-----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +         + S G +   +        G R   G    +
Sbjct: 725 VFFGAIRTDDSKHGEPMVVTSTGATVKVTPFKAYPAKG-RATGGVRAQR 772


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/465 (41%), Positives = 306/465 (65%), Gaps = 5/465 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +  V ++  ++  Y+ YA+S I  RA+PD+RDG KPVHRRI++AM+E+GL     ++KS
Sbjct: 7   RIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A +VG V+ K HPHGD +VY+SLVR+AQ F  R+PL+ G GNFG++DGD  AA RYTEAR
Sbjct: 67  ATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEAR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  +L+ ++++ VDF   ++E   EP V PS+FPNLL NG+ GIAVGMAT+IP HN
Sbjct: 127 MSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +A + L+DN   +++ +++ I GPDFPTGG I+  ++ I ++Y  G+G   VRA+
Sbjct: 187 LAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+  +G   I+VTE+PY V K+RLIEKIAEL+  K+I  + DIRDES ++   ++  
Sbjct: 246 TTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIE 305

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  D +++++ ++  + ++  F + M  L   + P+V+ L  +L  ++ H++EV+ RR
Sbjct: 306 IKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQ-PKVLTLMDMLNLYIEHQKEVIVRR 364

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432
           + + ++  + R  IL+GL  A  +IDEII+IIR+    ++ K  ++SRF  TE Q  AIL
Sbjct: 365 TRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAIL 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RL+ L  LE  +I+ EL  L+   E   ++L S       I  
Sbjct: 425 DMRLQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKK 469


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 222/687 (32%), Positives = 383/687 (55%), Gaps = 32/687 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ +  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  ++S++ +Y  G G   +R
Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K+RL++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    +    D++   ++ ++  +D+++    NM  L+ G+ P+ + L  +L+ ++ 
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ RR+   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +LNS K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELERLINKLKKILNSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT+  E     K  +++ ++E++ + + +SN  + + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTSIIEDDEKAKIDIEEIIVEEDVV-LTLSNESFAKRISLKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++ I+ AF    + +   +L ++  G        +           LK+   E +  
Sbjct: 602 IDLSETIIEAFSIEDFIAQKDMLFITDSGYIKKTTLDKF-NTNYTKIMVLKLKKGESLVK 660

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQ 677
              V  T +   +  +  K L F++++
Sbjct: 661 ADLVDRTREEKFLNIKTHKGLSFNVEE 687



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/491 (12%), Positives = 157/491 (31%), Gaps = 44/491 (8%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLLMESIFMLSDMET 337
            +++    EL+   +  L+E     + +    ++    K +    ++++E   +L+    
Sbjct: 466 KKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVLTLSNE 525

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILK-EWLAHRREVLFRRSSFRMQAIDRRVEIL------ 390
            F   +++ S  R    +      + ++     +   + +   +       +I       
Sbjct: 526 SFAKRISLKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPE 585

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQI 447
                  + +DEII  I   +           + +  +  I +   ++  +L K      
Sbjct: 586 FKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFIAQKDMLFITDSGYIKKTTLDKFNTNYT 645

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF------C 500
           K  +  L   +  + + L    ++   +     + +     + +     R          
Sbjct: 646 KIMVLKLKKGESLVKADLVDRTREEKFLNIKTHKGLSFNVEEPSLQPVDRNIIGYKLFDI 705

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             + + K        E +   V IS  G I          +    K+  S        + 
Sbjct: 706 LPNDSIKKVDFCDNYEYKSFYVNISKEGLI----------TISDLKDNKSHISLFTDSSK 755

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLL 615
             ++L   +GKAY +PA  L   +  G  I +         I     ++ F ++    + 
Sbjct: 756 -TLVLFDDEGKAYYIPAFMLQGIKEGGINISVF----TGDKISLLNAISTFRFEEDISIY 810

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLI 672
             S KG       SE+       + +     E+K+  ++    +    + ++ E   ++ 
Sbjct: 811 FSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIKEHEEQKDILIITEKAMVIR 870

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG-WL 730
           F  + +  M +   GV   S KD     +           I    ++ ++   ++    +
Sbjct: 871 FKSEAVNPMGKMASGVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGTIEINKIKV 930

Query: 731 GKRGGVGSLVP 741
             R G+G+ + 
Sbjct: 931 QNRAGIGNSLM 941


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 201/747 (26%), Positives = 378/747 (50%), Gaps = 27/747 (3%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               + E + + SL   + +R+  Y+   I++RA+PD RDG KPV RRI+++M ++ L  
Sbjct: 8   EQEQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWN 67

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              FKKSARIVG+VIGK HPHGD S+Y+++VR+AQ +    PLI   GN G+ID D AAA
Sbjct: 68  DKPFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAA 127

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+ +++ L+L+G++++ V F   +++ + EP V P+  PNLL NG  GIA G A
Sbjct: 128 MRYTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFA 187

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T +P HN+ EI +AA+A I    + +E L++YI GPDFPTGG+ +     IV++++ GRG
Sbjct: 188 TEMPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGV-IHGLSGIVQAFKEGRG 246

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +  ++    +      I++T+IPY   KS+++  I E+I+ ++I  ++++ D+S  D
Sbjct: 247 RISLTCKYEHINLP-DKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRD 305

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     +  + + +M+ +F  ++++  +  N N+      P ++ L+ +L  ++ H 
Sbjct: 306 GISIAIKLEKKANHESIMKYLFSKTELQVFYNYN-NIAIKNGSPTLLNLNELLDIYIEHL 364

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLT 424
           + +  +   F +     R+E+++G L      D+IIA IR  +  K  ++      F+ +
Sbjct: 365 KTINVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDLIRIFAFS 424

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           + Q  AI  LRL  L + + Y  ++E + L+ +    + +LNS  +    +   ++++K+
Sbjct: 425 QRQATAIAELRLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKK 484

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLS 541
            +         R T        +    + ++  E   V +S  G+++ + S +    D +
Sbjct: 485 TYPTP------RKTQIIDEELKRNYDIEELVVDEKCYVSLSQDGYLKRVSSKTFKTNDFA 538

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHN 599
           +   KE D+L     A T D++L+ S  G    +P   +     +  G  I   +  N  
Sbjct: 539 SFGLKENDNLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSY 598

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSSEEKMKLVV 654
           + I+   V   +     + +V+ KG    V  ++ +  TR+ K    + +  ++++  V 
Sbjct: 599 EKIIYVLVVNEFSQDYYISLVTQKGLGKRVSLNKFL-ITRQSKISNAITLKDDDRLVDVR 657

Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWI 712
              G  ++ +      ++ FS D +P +S +G+G ++    +G     +          +
Sbjct: 658 VSKGKQNIILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEKVSAMSITKTTDNLIL 717

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSL 739
            +   +  +       +   R   G  
Sbjct: 718 ITNKNNLIKVPTSHFKF-TPRAAKGKR 743


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/693 (33%), Positives = 379/693 (54%), Gaps = 33/693 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +   V+ N+  VS+  A+ E YL YA+   K+RA+PD+RDG KPVHRRI++    +    
Sbjct: 5   TTIPVDNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFP 64

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+ DGD+AAA
Sbjct: 65  DKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGDNAAA 124

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEAR+T +A  +++ +D+  VD  D Y+  + EP V P+K+PNLL NG  GIAVG+A
Sbjct: 125 MRYTEARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIAVGLA 184

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN++E+ +A +A ID  +I  ++L+EYI GPD PTGGII+  ++S++ +Y  G G
Sbjct: 185 TNIPPHNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIII-GKKSLLSAYETGEG 243

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDE 304
              +RA+  +E +  G   IV+TE PY+  K++L++ I+E+   K+    +  + DIRDE
Sbjct: 244 RVTLRAKTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISDIRDE 303

Query: 305 SAEDVRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           S       +    +S D +    +++ +F  +DM+     NM  L+ G+ PQ M L  IL
Sbjct: 304 SDRTGVRAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGK-PQTMGLKTIL 362

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418
             ++ H+++V+ RR+   M+   +R  I++G + A   +DEII +IR+    K       
Sbjct: 363 YHYIEHQKDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAGKNLI 422

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F  TE Q +AIL L L  L  LE    + E   L  E ++++ +L+S K+    I  E
Sbjct: 423 EGFGFTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIKRLNKILSSEKELLKIIKKE 482

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           + E++E +      G  R T    +  +     + +I +E I + +SN G+I+ +   + 
Sbjct: 483 LTEIREKY------GDNRKTTIVENDDEAKINLEELIVEEDIVITMSNEGFIKRIPLKTY 536

Query: 539 D-----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
           +     +  + ++EGD  K  ++++T   ++  +  G  Y     N+     +  GE I+
Sbjct: 537 NRINAEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKGERIE 596

Query: 592 LLID-LN-HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
            +I  L+   + IV  +    +  +  L+  + +G        +           LK+ +
Sbjct: 597 SIIKTLDVSQESIVAVYSANDFMESQNLIFFTDRGIVKKTGIDKF-NTNYTKIMALKLKN 655

Query: 647 EEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQ 677
           EE++  V+    D     +  E  K L F +++
Sbjct: 656 EERVIKVIIAPKDRKETFINIETEKGLKFVVEE 688



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 102/301 (33%), Gaps = 25/301 (8%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACE-------IREVKEIFSKSTDLGRRRTTFCEVSRA 505
            L  E+  I  ++    ++   I  E       + E  +I     ++   +         
Sbjct: 652 KLKNEERVIKVIIAPKDRKETFINIETEKGLKFVVEEPKIEESDRNIMGLQLVNLSPKDR 711

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
             +    A    +  T+ I+  G I+     + D + +  K      +++   +  +IL+
Sbjct: 712 IISIDFTAEFVFKTFTLSINRFGIIK-----TSDRNRMSSKP-----LSVSTDSKSKILI 761

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNA 623
            S DG  ++ PA  L +    G +I+ + D     +IV            +   + KG  
Sbjct: 762 FSKDGNVFSTPAFMLQNVGEQGISIKDIWDDIDKDNIVNIISVKDFDDGNIYFFTKKGMV 821

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIFSIDQIPEM 681
                 E   +      +   S ++ +  V     T + + +V +    + F  D I  M
Sbjct: 822 KKTSLKEFEGDYFSTIAYKFKSDKDILINVQLSKNTEEEIIMVTKRAMCIRFQSDTINPM 881

Query: 682 SR-GKGVRLQSYKDGGI---SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            +   GV   S K+      S+++  K C    ++  + +S           +  R G G
Sbjct: 882 GKVASGVTGISLKEDDEVIYSEILSCKKCLNNKFVLKSSQSIAIDVAIDDIKIQNRAGRG 941

Query: 738 S 738
            
Sbjct: 942 K 942


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 161/583 (27%), Positives = 281/583 (48%), Gaps = 31/583 (5%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           M  +IP HN+ E+ +A   +IDNP ++ E L++ I GPDFPTGG+I+  RE I ++Y  G
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGGLIM-GREGIRQAYLTG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG   +RA+  +E++  G   I+V EIPYQV K++L+E+IAEL+  KR+  + D+RDES 
Sbjct: 60  RGSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESD 119

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                ++    R ++P +++  ++  + M+  F +NM  L    VP+V+ L  I+  +L 
Sbjct: 120 RKGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLALVDN-VPKVLNLRDIIYYYLE 178

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423
           H+++V+ RR+ + ++  + R  IL+GL IA  NID II IIR    ED  +  M+  F  
Sbjct: 179 HQKDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMMGEFGF 238

Query: 424 TENQVDAILNLRLRSL-RKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWNQIACEIRE 481
           +E Q  AIL++RL+ L R     ++K  + +LL       +   NS K   + I  EI E
Sbjct: 239 SEKQAQAILDMRLKRLVRNWTGKRLKKSIQSLLNSFAYFRARNWNSEKLVLDIIKKEIGE 298

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------L 533
           +K  F+ +     RRT   E++        + +I +E   V I++ G+I+          
Sbjct: 299 IKAKFADA-----RRT---EITAGAGDFDIEDLIAEEDAVVTITHNGYIKRLHVNTYKAQ 350

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           +     ++A+  KE D +++     T   +L  +  GK Y L    +   S    G AI 
Sbjct: 351 RRGGKGVTAMGTKEDDFVELLFITTTHHYLLFFTDKGKVYRLKTHEIPEASRTAKGTAIV 410

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            L+++  +  +        +     LL  +  G        +  ++ ++G   L +   +
Sbjct: 411 NLLNITGDDKVNAVIPVKEFSKDQYLLTATRNGIVKKTVLQQYDSSRKEGLIALTLDDGD 470

Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKI 705
           ++  V    G+  + +   N   + F    + EM R  +GV+     KD  +  +  FK 
Sbjct: 471 ELIGVKLTDGESDILLATRNGMAVRFPEGDVREMGRTTRGVKGIELSKDDFVVAMETFKD 530

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + +  +        +           RGG G +  +   ++G
Sbjct: 531 DDKIDLLMITESGMGKRTAVEEYRSQHRGGKGIISMRLTQKTG 573



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 14/191 (7%)

Query: 525 SNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           +  G ++       D S      AL   +GD L           ILL + +G A   P G
Sbjct: 440 TRNGIVKKTVLQQYDSSRKEGLIALTLDDGDELIGVKLTDGESDILLATRNGMAVRFPEG 499

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTR 636
           ++         ++  I+L+ +  +V    +    K  LL+++  G        E  +  R
Sbjct: 500 DVREMGRTTRGVKG-IELSKDDFVVAMETFKDDDKIDLLMITESGMGKRTAVEEYRSQHR 558

Query: 637 KGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
            GK  + +   +K  L+  +     GD + V+     ++  ++D+I   SR  +GV +  
Sbjct: 559 GGKGIISMRLTQKTGLMAGIKVVRPGDELMVISAEGVIIRLNVDEISRFSRVTQGVSIMK 618

Query: 692 YKDGGISDVIC 702
                    + 
Sbjct: 619 INPNDKVVAVA 629


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 223/687 (32%), Positives = 379/687 (55%), Gaps = 32/687 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+ A  L  A+ E YL YA+   KERA+PD+RDG KPV RRI++    +       + 
Sbjct: 10  DNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R P+I G GN+G+ DGDSAAA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRYTE 129

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +++ +D+D V+  D Y+  + EP V P+KFPN+L NG  GIAVG+AT+IP 
Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA ID  EI+ ++LL YI GPD PTGG+I+  + S++ +Y  G G   +R
Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKNSMLSAYETGEGRVTLR 248

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +E++  G   IV+TE P++  K++L++ I+E+   K+    +  + DIRDES  + 
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    + +  D++   ++ ++  +D+++    NM  L     P+ + L  +LK ++ 
Sbjct: 309 TRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVAL-AEGKPKTLGLKAMLKYYVE 367

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H++EV+ R++   ++  ++R  I++G + A   +DEII  IR        +  ++ +FS 
Sbjct: 368 HQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    + E   L     K+  +L+S K+    I  E+ EVK
Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILSSEKELLKVIKKELIEVK 487

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E ++       RRT+  E     K  +++ ++E++ +   +SN G+ + +   S + S+ 
Sbjct: 488 ETYNDK-----RRTSIIEDDEKAKIDIEEIIVEEDVVV-TLSNEGFTKRIALKSYNRSSA 541

Query: 544 H-----FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---LID 595
           +     ++EGD  +  +  +T D + L++ +G  Y +   N+   +   + ++L   +  
Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601

Query: 596 LNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           ++ ++ I+ AF  D       +L ++  G        +           LK+  EE +  
Sbjct: 602 IDLSETIIEAFSIDDFTAQKDMLFITDSGYMKKTTLDKF-NTNYTKIMALKLKKEESLLK 660

Query: 653 VVKV--TGDHVAVVGENRKLLIFSIDQ 677
              V  T +      + +K L F+I++
Sbjct: 661 ADLVDRTREEKFFNIKTQKGLSFNIEE 687



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/491 (12%), Positives = 145/491 (29%), Gaps = 44/491 (8%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +++    EL+   +  L+E     + +    ++    ++      +     +    +  
Sbjct: 466 KKILSSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVVTLSNE 525

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRR---EVLFRRSSFRMQAIDRRVEIL------ 390
                +           ++ I        R   +   + +   +       +I       
Sbjct: 526 GFTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPE 585

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSLRKLEEYQI 447
                  + +DEII  I   +             +  +  I +   ++  +L K      
Sbjct: 586 FKWKEKGVKLDEIIKTIDLSETIIEAFSIDDFTAQKDMLFITDSGYMKKTTLDKFNTNYT 645

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQ--IACEI-----REVKEIFSKSTDLGRRRTTFC 500
           K     L  E+  + + L    ++     I  +       E   + +   ++   +    
Sbjct: 646 KIMALKLKKEESLLKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEAVDRNIVGYKLFDI 705

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
             + + K        E +   V IS  G I          +    KE  S        + 
Sbjct: 706 LPNDSIKQVDFCDNYEYKSFYVNISKDGLI----------TISDLKENKSHVSLFTDSSK 755

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLL 615
             I+L  ++GKAY +PA  L + +  G  I           I     ++ F ++    + 
Sbjct: 756 -TIVLFDSEGKAYYIPAFMLQNIKEKGINISAF----TGDKISLLNAISTFRFEEDISIY 810

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLI 672
            +S KG       SE+       + +      +++  ++        ++ ++ E   ++ 
Sbjct: 811 FISKKGLIKRTVLSELKIEGNSAQVYKFKDKGDELVSILIKEHGEEKNIIIITEKAMVIR 870

Query: 673 FSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           F  + +  M +   GV   S KD   +   +     +              +       +
Sbjct: 871 FKSEAVNPMGKMASGVTGISLKDLDKVILALIIDENDTGKIKIKTKSKDKGTVEINKIKV 930

Query: 731 GKRGGVGSLVP 741
             R G+G+ + 
Sbjct: 931 QNRAGIGNSLM 941


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/783 (26%), Positives = 371/783 (47%), Gaps = 53/783 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+   VE  +        + + +  Y LS + +RA+PD RDG KPV RRI+  M E    
Sbjct: 7   NTEKTVETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGMREARYL 66

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
                 KSA +VG ++G  HPHGD SVYD+ VR+AQPF  RYPLI GQGN G+ DGD+ A
Sbjct: 67  ASRPTVKSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSEDGDAPA 126

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTY--NEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AYRYTE R++ +AE ++  ++ + V    TY  +    EP   P + P +  N +SGIAV
Sbjct: 127 AYRYTEMRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPV-VNPSSGIAV 185

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T+IP HN+ E+  A +AL+D P++++++L+ YI GPDF  GG I+   E I + +  
Sbjct: 186 GLSTNIPPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHII-GTEGIRDYFTT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDE 304
           G+G   VRA   +EE  R    +VVT IP    + ++   I +   A+++   + D+RDE
Sbjct: 245 GKGRIIVRAEVRLEETPRSR-ALVVTRIPP-TGRDKVKASIIKAFNARKLEGMMADLRDE 302

Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLD 358
           S  E    ++    + +D    +E ++  +D++      M  L        R P+   + 
Sbjct: 303 SDTEKGTRIVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPKQTGML 362

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +L  W AH+ ++L RR+ + ++    R+ +++GL+    + +EI+ I +  +     + 
Sbjct: 363 ELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDRASARR 422

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +  R+SLTE Q D I ++ L  + KL+  + + E D L    E++++LL + +   + +
Sbjct: 423 AIEERYSLTEIQSDVIASMTLSQVTKLDSGKYQRERDELQRRIEELENLLANRRALISLL 482

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA--MIEKEPITVVISNRGWIRSL 533
             E++++   F+        R T+ +V     A +     + E+EP+TV  +  G +++L
Sbjct: 483 KKEMQQLMRQFADE------RRTYIDVEGQPHAPITHVASLHEREPLTVAFAFPGTLKAL 536

Query: 534 KSHSVDLSALH-------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
              +      +        +  + L+  +   T D +L +S+ G+ + + +  L   +  
Sbjct: 537 APDTFKPKQKNGVLAYNPVRGDEQLRQVVATTTRDYLLCMSSTGRVFQVGSHRLPLVTRS 596

Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             GE I+ L++L   ++IV       YD    ++  S  G       SE       G   
Sbjct: 597 AKGEVIRDLLELAPGEEIVAVVPIDAYDEDRYMVTFSRLGKVKKSPLSEYKTVDIDGAQD 656

Query: 642 LKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG--- 696
           +K++  + +   +   G     V  +  + L FS + +    R G+GV   +   GG   
Sbjct: 657 MKLAEGDSVVTALLSRGQGEYFVTTDYAQTLRFSDEALRAQGRVGQGVAAIALAKGGGVV 716

Query: 697 ------------ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
                       + +     + E  + +    +   +           R   G +  +  
Sbjct: 717 VSASYYEPQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIG 776

Query: 745 PRS 747
            + 
Sbjct: 777 DKD 779



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 69/216 (31%), Gaps = 33/216 (15%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               A +     +++   V  S  G ++                 +   EGDS+  AL +
Sbjct: 612 EEIVAVVPIDAYDEDRYMVTFSRLGKVKKSPLSEYKTVDIDGAQDMKLAEGDSVVTALLS 671

Query: 558 H-------TTDR--ILLLST-----DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ--D 601
                   TTD    L  S       G+        +   +G G  +            D
Sbjct: 672 RGQGEYFVTTDYAQTLRFSDEALRAQGRVGQ-GVAAIALAKGGGVVVSASYYEPQGTVVD 730

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK--VSSEEKMKLVVKVTG- 658
             T  V      LLVV+ +G    V  S+     R     +   +  ++++ L + V   
Sbjct: 731 ETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIGDKDRVLLSMLVNEQ 790

Query: 659 DHVAV--VGENR----KLLIFSIDQIPEMSRGK-GV 687
           DH+ +   G N       L+  + ++    R K GV
Sbjct: 791 DHLLLGWTGRNGEKGEHALVLPVSEVKAFPRVKQGV 826


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/764 (27%), Positives = 364/764 (47%), Gaps = 56/764 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ LD     
Sbjct: 1   MSEKILRTEYSEEMQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   L+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLKKFAEEVYLKDLDKTVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A  A IDN  +++E+L++Y+ GPDFPTGGI + ++  +++ Y  G G  R+
Sbjct: 181 PHNLGEVIDAVKAYIDNRLLTVEELMQYMPGPDFPTGGI-IANKGDLLQIYETGAGKIRL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R R  VE          +V+TEIPY       ++ +  +A+L+  +++  + DI ++S++
Sbjct: 240 RGRIEVELGRRKADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSSK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  + +NM  +     P+ M L  IL  +L  
Sbjct: 300 EGIRIVLELKKDADVNRIKAILYKKTKLEDTYGVNMLAI-DEGRPETMNLKQILNTFLEF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK---------- 414
           +   + ++ +  +Q    + E+ +GL+ A   ID IIA++R   N    K          
Sbjct: 359 QYRNMTKKYNVLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLMTGNTEK 418

Query: 415 --------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                            TE Q  AIL +RL  L  LE   ++      L +  +   +L+
Sbjct: 419 IKFRVPGFEADAKNLHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIREYKHILS 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + K     I  ++  +K  F++       R T  E    ++    +A  E + +  V+  
Sbjct: 479 NQKNMDVVIKEDLDSIKAEFAEP------RRTLIE--DGEEMVYVEAKEEAKEVIFVMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
            G+ +++     + +       +     L   T D++ + S  G  Y +          +
Sbjct: 531 FGYCKTMDRSIYERNQETVDSENVW--VLPVMTDDKLCMFSDTGNMYQVKVAEFPTLKMK 588

Query: 585 GHGEAIQLLIDLN-HNQDIVTAFV--YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I+ +   +   + I+        +  K L  +++    IV   E I   +     
Sbjct: 589 DKGIPIENVSKFDGKTETILFMLPASGFTGKKFLFATAQAAVKIVPGEEFITANKT-VVA 647

Query: 642 LKVSSEEKMKLVVKVTGD-----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            K++ E+K+  + ++  +      V +   +   L F +++IPE+ +  +GVR    +  
Sbjct: 648 TKLAGEDKLTEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPELKKNSRGVRGIRLEKE 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
              + +     +G         +  R +      + KR G G+ 
Sbjct: 708 DTLEHVYLPDMDGTAVYKGKEVALGRLK------VAKRDGKGTK 745


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/769 (29%), Positives = 377/769 (49%), Gaps = 60/769 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+++M E G     A  KS
Sbjct: 22  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDRAHVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 82  ARVVGDVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEAR 140

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+  A L++  + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 141 MSHEAMLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 200

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+  ++KL+E++ GPD PTGG+++   + +  +Y  GRG  R+R R
Sbjct: 201 LAEVVSAARWLINHPDADLDKLMEFVPGPDLPTGGVLL-GLDEVRRAYETGRGVVRMRGR 259

Query: 256 WCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAE-DVRI 311
             +   E  RG   I V E+PY V   ++I  +   +   + +  + D++D +   +   
Sbjct: 260 VEIGPLEGSRGRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRENGTR 319

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +L HR +V
Sbjct: 320 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PQTLGLKALLEVFLRHRYDV 378

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS++R +    R+ ++ GLLIA L+ID+++ +IR+ D     K  ++ +F L++ Q 
Sbjct: 379 VTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQFKLSDIQA 438

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L K +  ++++E + L  E  ++ ++L+  K     ++ E+  V + F  
Sbjct: 439 SYILDTPLRRLTKFDRIELEAEQEQLRKEIAQLSTILDDEKVLRKVVSDELAAVVKKFGT 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S  G +    + S + +   
Sbjct: 499 E-----RRTTLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEEAAEGR 553

Query: 545 FKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQ 591
            + G    D+++  +H+    R+LL+++ G+A+ +    L          S RG G +  
Sbjct: 554 RRSGRVKHDAVRALVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQAGTVSLRG-GMSAA 612

Query: 592 LLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTF 641
            L+ L   + +V       T +    L + + +G   +      V   E           
Sbjct: 613 ELVPLEPGESVVGLAPLGPTAEGSPGLALGTRQGVVKVCAPDWPVRSDEFE--------V 664

Query: 642 LKVSSEEKMKLVV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
           + +   +++        G   +A V     LL F    +     +G G+   +   G   
Sbjct: 665 VGLREGDEVVGATWLADGSETLAFVSSEASLLRFPASLVRPQGPKGGGMAGINLPAGARV 724

Query: 699 DVICFKICEGLT-----WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   +  +      + S G +   +  +     G R   G    +
Sbjct: 725 VFFGAVREDDPSHGEPMVVTSTGATVKVTPFEAYPAKG-RATGGVRAQR 772


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/764 (30%), Positives = 378/764 (49%), Gaps = 60/764 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L+  +E+ YL YA S I  RA+PD RDG KPVHRRI+++M+E G     A+ KS+R+VG
Sbjct: 27  PLKTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMNENGYRPTHAYVKSSRVVG 86

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA RYTEARM+  A
Sbjct: 87  DVMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARMSPEA 145

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  + ED VDFR  Y+    EP V P+ FPNLL NGTSGIAVGMAT++  HN+ E+ 
Sbjct: 146 MQLVGELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEVI 205

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV-- 258
            AA  LI +P  +++KL+E++ GPD PTGG  +   + +  +Y  GRG  R+RA      
Sbjct: 206 AAARWLITHPSATLDKLMEFVPGPDLPTGG-SLLGLDEVRRAYETGRGVVRMRANCETGP 264

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESAE-DVRIVLFPK 316
            E  RG   I VTE+PY V   ++IEKI + +   + +  + D++D +   +   ++   
Sbjct: 265 LEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLVIEC 324

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
              ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +L HR +V+ RR+
Sbjct: 325 KVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQTLGLKELLEVFLRHRYDVVTRRT 383

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            +R +  + R+ ++ GLLIA LNID++I +IR  +     K  +++RF L+E Q   IL+
Sbjct: 384 KYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGLMTRFKLSEIQATYILD 443

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
             LR L K +  +++SE + L  E  ++  +L+        ++ E+ ++ + F       
Sbjct: 444 TPLRRLTKYDRLELESEQERLREEIAELSKILDDESVLKKLVSAELAKIAKDFPTE---- 499

Query: 494 RRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALHFKEG- 548
            RRT   +    +     +         +P  V++S  G +    + S + +    + G 
Sbjct: 500 -RRTALIDGDLKEVLAASKPSGPLEVADDPCQVILSATGLVARTAAESEEATETRRRNGR 558

Query: 549 ---DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQLLIDL 596
              D++   +H     +ILL+++ G+A+      L          S RG G A + L+ L
Sbjct: 559 VKHDAVAALVHTTARGQILLVTSRGRAFKTDVLPLPVLPEQAGTVSLRG-GMAAKELVPL 617

Query: 597 NHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTFLKVSS 646
              + +V              L + +  G   I      V   E           + +  
Sbjct: 618 EKGETVVGIAPLGEQAAGSPGLALGTRAGVVKICSPEWPVRSDEFE--------VISLKD 669

Query: 647 EEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGISDVIC 702
            +++     +T   + +A V     LL ++   +     +G G+   +   D  +     
Sbjct: 670 GDEVVGATWLTDGSETLAFVSSEASLLKYAASLVRPQGLKGGGMAGMNLSGDASVVFFGA 729

Query: 703 FKICEGL----TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +  +        I + G S   +        G R   G    +
Sbjct: 730 VRTDDDEHGEPMVITATGLSVKVTPFSEYPAKG-RATGGVRAQR 772


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 199/447 (44%), Positives = 307/447 (68%), Gaps = 5/447 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S+   +  ++ +++   +   +L YA+S I  RA+PD+RDG KPVHRR+++AM+++G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM++++  +++ + ++ +D++D Y+  + EP+V P++FPNLL NGT+GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ +  LAL  NP+I+I +L+EYI GPDFPT G+I+  R  I  +Y  GRG
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIAEL+  K+I  + D+RDES  +
Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  + ++L+ +++  + ++T F +NM  L  G  PQV+ L   L  +L H+
Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++DE+I +IR+    D  K  ++ RF L+E
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELD 452
            Q  AIL++RL+ L  LE  +I+  + 
Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQNIK 447


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/747 (30%), Positives = 368/747 (49%), Gaps = 80/747 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 11  IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 70

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 71  RVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 130

Query: 137 TQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +A   +L+G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN
Sbjct: 131 APIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHN 190

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG   VR  
Sbjct: 191 LGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRGLIPVRGV 249

Query: 256 WCVEEVGR------GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +E +            IV+TE+P+QV K+  IEKIA L+   ++  + D+RDES    
Sbjct: 250 SHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG 309

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  +P+ +++ ++ ++ +++ F +    L   +  Q M L  IL+E+L  R 
Sbjct: 310 MRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQ-MSLRQILQEFLQFRE 368

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           + L R+    +    RR+E+L GLLI   N+D +I I+R        K  +  R  ++  
Sbjct: 369 DTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQ 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL + +R +  LE  +++ E  +L    E++++L+   +++   +  E+R +K+ F
Sbjct: 429 QGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKF 488

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS-----------------NRGW 529
           +       RRT   +   A    L          T+                        
Sbjct: 489 ADE-----RRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQSAPEEELDSPGEPEQEQL 543

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHA---------------HTTDRILLLSTDGKAYT 574
           +    S     SA   K+ D                        T  +++ ++      T
Sbjct: 544 VLENSSPPTADSAPEAKQDDLNLAVKPTPKTVKQEAQPSPEVIATHSKLVSVAEK-NPLT 602

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHN-----QDIVTAFVYDSTCK---------LLVVSSK 620
           L                L I+L        +++ +A  ++   +         L+V+   
Sbjct: 603 LFTPQTPPAEAF-----LSINLQGEIAWHPEELTSANSFEPLDQQFSIQGRETLIVIGDH 657

Query: 621 GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG--------DHVAVVGENRKL 670
           G AF V  ++I  +A TR     +   S ++    V   G          + +V +  ++
Sbjct: 658 GKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRV 717

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            + +  ++ E+   +G+ L   K+G +
Sbjct: 718 KLLAGQELQELGP-RGLSLMKLKNGDL 743



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 22/222 (9%)

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---- 606
           L         + ++++   GKA+ +   ++         +  ++  +  +D  T      
Sbjct: 639 LDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGF 698

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT------- 657
               +    LL+VS +G   ++   E+     +G + +K+ + + ++    VT       
Sbjct: 699 LPPPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASA 758

Query: 658 ---GDHVAVVGENRKLLIFSIDQIPEM---SRGKGVRLQSYKD-GGISDVICFKICEGLT 710
              G ++ +   N +LL F   Q+         +G      +    +  V+     + + 
Sbjct: 759 QNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGVLMASPGDRVL 818

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  AG  Y +  +     LG  G +G+ V +   ++ + L+
Sbjct: 819 LLTQAG--YGKQLDLASVRLGNFGELGTTVMQFTSKADRLLT 858


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/747 (30%), Positives = 368/747 (49%), Gaps = 80/747 (10%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     F+K A
Sbjct: 35  IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 94

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+V+GK HPHGDQSVYD+LVR+ Q F  RYPL++G GNFG++D D  AA RYTE R+
Sbjct: 95  RVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 154

Query: 137 TQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
             +A   +L+G+ E  VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN
Sbjct: 155 APIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHN 214

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  + LI+ P++S ++L + I GPDFPTGG I++S E I+++Y+ GRG   VR  
Sbjct: 215 LGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRGLIPVRGV 273

Query: 256 WCVEEVGR------GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             +E +            IV+TE+P+QV K+  IEKIA L+   ++  + D+RDES    
Sbjct: 274 SHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG 333

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R  +P+ +++ ++ ++ +++ F +    L   +  Q M L  IL+E+L  R 
Sbjct: 334 MRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQ-MSLRQILQEFLQFRE 392

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           + L R+    +    RR+E+L GLLI   N+D +I I+R        K  +  R  ++  
Sbjct: 393 DTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQ 452

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q DAIL + +R +  LE  +++ E  +L    E++++L+   +++   +  E+R +K+ F
Sbjct: 453 QGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKF 512

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS-----------------NRGW 529
           +       RRT   +   A    L          T+                        
Sbjct: 513 ADE-----RRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQSAPEEELDSPGEPEQEQL 567

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHA---------------HTTDRILLLSTDGKAYT 574
           +    S     SA   K+ D                        T  +++ ++      T
Sbjct: 568 VLENSSPPTADSAPEAKQDDLNLAVKPTPKTVKQEAQPSPEVIATHSKLVSVAEK-NPLT 626

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHN-----QDIVTAFVYDSTCK---------LLVVSSK 620
           L                L I+L        +++ +A  ++   +         L+V+   
Sbjct: 627 LFTPQTPPAEAF-----LSINLQGEIAWHPEELTSANSFEPLDQQFSIQGRETLIVIGDH 681

Query: 621 GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVTG--------DHVAVVGENRKL 670
           G AF V  ++I  +A TR     +   S ++    V   G          + +V +  ++
Sbjct: 682 GKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRV 741

Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGI 697
            + +  ++ E+   +G+ L   K+G +
Sbjct: 742 KLLAGQELQELGP-RGLSLMKLKNGDL 767



 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 22/222 (9%)

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---- 606
           L         + ++++   GKA+ +   ++         +  ++  +  +D  T      
Sbjct: 663 LDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGF 722

Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT------- 657
               +    LL+VS +G   ++   E+     +G + +K+ + + ++    VT       
Sbjct: 723 LPPPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASA 782

Query: 658 ---GDHVAVVGENRKLLIFSIDQIPEM---SRGKGVRLQSYKD-GGISDVICFKICEGLT 710
              G ++ +   N +LL F   Q+         +G      +    +  V+     + + 
Sbjct: 783 QNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGVLMASPGDRVL 842

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +  AG  Y +  +     LG  G +G+ V +   ++ + L+
Sbjct: 843 LLTQAG--YGKQLDLASVRLGNFGELGTTVMQFTSKADRLLT 882


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/596 (30%), Positives = 334/596 (56%), Gaps = 20/596 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ +  +      R T  +    +     + ++  E + V ++  G+++     S   S 
Sbjct: 475 KKKYKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASN 528

Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLL 593
              L  KE D        ++ D +LL ++ G     P   L   R    G+ +  L
Sbjct: 529 GAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHL 584


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 214/740 (28%), Positives = 384/740 (51%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +  +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYACNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 220/762 (28%), Positives = 360/762 (47%), Gaps = 55/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RA+PD+RDG KPV RR++  M E+ +      
Sbjct: 1   MPEQILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI G+ +GK HPHGD S+Y++LV LAQ F +   L+ GQGNFG+I+GDSAAA RYT
Sbjct: 61  LKSARICGDTMGKYHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +  E +L      +V F+  Y+ +  EPVV P+K P  L NG+ GIAVGM TS P
Sbjct: 121 EARLEKFTEEVLLQDLALSVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ E+    L+ + NPE+S+ ++LE + GPDFPTGGI V ++  + E YR G+G  R+
Sbjct: 181 SHNLSEVISLILSYLKNPELSLSEMLEIMPGPDFPTGGI-VANQSELEEIYRTGQGRLRL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +   E  E       +VVTEIPY +      + ++ +A L   K+I  + DI ++S E
Sbjct: 240 RGKLSFEKKEGRSDRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNE 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               ++       D + +   ++  + +E  FP+NM  +     P+ + L  IL+E+L  
Sbjct: 300 QGIRIVLELKSGADIEKIENILYKKTKLEDSFPVNMLAI-AHGRPETLSLKRILEEYLGF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----- 422
           + E L  + S  ++  +R+ EI +GL+ A   ID IIA++R     K    +        
Sbjct: 359 QVERLEAKFSKLLEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLSL 418

Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                              T+ Q  AIL++RL  L  LE   ++      L   +    L
Sbjct: 419 IQLKERDEVFRKTIEGFRFTDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNYKEL 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L S K  +  +  E+ ++++ + K      R+T  C+      A      IE+  +  + 
Sbjct: 479 LGSKKVLYAHLEQELLQIQKDYGKE-----RKTKICDARE---AVYDDTAIEEMDLYYLQ 530

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--S 582
              G+++ +   +   +    +        L    TDR+L  +  G  + +   ++    
Sbjct: 531 DRFGYVKCVDPGTFQRNKESIEAD--YAYVLPCKNTDRLLFFTDLGNMHQIKILDVPVTK 588

Query: 583 GRGHGEAIQLLIDLN-HNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            +  G  +  L   +   + +V  F+        LL V+ +     V+  E     R   
Sbjct: 589 FKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEETLLFVTEQAQIKRVKGEEFATQNRL-V 647

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGI 697
              K+  E+++  V+ V  + + +  E+   L FS+ ++P   +  KGV   S +    +
Sbjct: 648 QATKLGEEDRLLSVLPVGEEDIVLETEDSYFLRFSLSEVPLQKKTAKGVLAMSLRPKDYV 707

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             V      E +           ++ N      GKRGG G  
Sbjct: 708 KKVYSLAAEENVELES-------KTLNLQRLKQGKRGGKGVK 742


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/764 (29%), Positives = 372/764 (48%), Gaps = 55/764 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RA+PD+RDG KPV RR+++ M+E+ +      
Sbjct: 1   MAEKILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPT 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSARI G+ +GK HPHGD S+Y++LV LAQ F +  PL+ GQGNFG+I+GDSAAA RYT
Sbjct: 61  LKSARICGDTMGKYHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ +  + ++    E  V F+  Y+E+  EP V P++ P  L NG+ GIAVGM TS P
Sbjct: 121 EARLQRFTDEVMLRDLETTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSAP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           SHN+ EI +  LA + NP +   ++L Y+ GPDFPTGGI + +R  +++ YR G G  ++
Sbjct: 181 SHNLSEIIDLVLAYLKNPAMETREMLHYLPGPDFPTGGI-IANRSELLDIYRTGSGKLKL 239

Query: 253 RARWCVEEVG--RGSWCIVVTEIPYQVQKS---RLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +   E+         ++VTEIPY +      + ++  A L+  K++P + DI ++S +
Sbjct: 240 RGKLVFEKRKGRSDKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++       D D +   ++  + +E  F +NM  +  G  P+V+ L GIL+E+L+ 
Sbjct: 300 DGIRIVLELKSGADIDRITNILYKKTKLEDSFGVNMLAIVKG-RPEVLSLRGILREYLSF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR---- 420
           + +++ ++    ++    R EI +GL+ A   ID IIA++R+    ++ K  ++      
Sbjct: 359 QYQLIEQKYQKLLEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALMGEGSEG 418

Query: 421 ----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                           F  TE Q  AIL+++L  L  LE   ++ E    L   ++   +
Sbjct: 419 IRLRERDREYREQIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEYRGI 478

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S ++    +A E+ E++E +         R T  E      A   ++ +E+  +  V 
Sbjct: 479 LSSRERANELLAQELSEIRERY------FVPRRTLLE--DGKDAVYDESAVEEMQVVYVQ 530

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG- 583
              G+++ L       +          +  +    TDRILL +  G+ + +   ++  G 
Sbjct: 531 DRFGYVKLLDETVYQRNQEALLSES--RFLIPCKNTDRILLFTDQGRLHQIRLLDVPLGK 588

Query: 584 -RGHGEAIQLLIDLNHNQDIV---TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
            R  G  I  +   + +++ +    A    S  +LL VS  G A  V   E     R   
Sbjct: 589 FRDKGVPIDNISKYSASEEEILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDTANRL-V 647

Query: 640 TFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +  K+   +++  V+ V G   + + +  E    L F I ++P   +  KGV       G
Sbjct: 648 SATKLQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGRG 707

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                    I  G   + +       S          RGG G+ 
Sbjct: 708 DRIRS-ALLIAPGSERLSTEKGELMLSRL----KQSHRGGRGAK 746


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 385/740 (52%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLLTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+++   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/761 (27%), Positives = 370/761 (48%), Gaps = 51/761 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +E+ +        +++ ++ YA+S I  RA+PD+RDG KPV RR ++ M E+GL +   +
Sbjct: 1   MEDRIIKTEYSDIMQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+YD LV + Q F +  PL+ G GNFGNI+GDS AA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYT 120

Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR++++ +   L+ +D++ VDF   ++E + EP V P K PN L NG+ GIAVGMATS 
Sbjct: 121 EARLSKITQENFLEDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATST 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A +A + +  ++ + L++YI GPDFPTGGI++ +++ ++E Y  G G  R
Sbjct: 181 PPHNLAEVIDAEIAFMQDDTLTTKDLMKYIKGPDFPTGGIVI-NKDELLEIYETGVGKIR 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R +   E+   G   +V+TEIPY    +   + +  +AEL   K    + DI ++S+++
Sbjct: 240 IRGKVETEKGKNGHINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKE 299

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    +  + +     ++  + +E  F +NM  +  G  P+ M L  I++     +
Sbjct: 300 GIRIVIELKKDTNVENFTNLLYKKTKLEDTFGVNMLAIDNG-RPETMSLREIMRACADFQ 358

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PK----------- 414
            E   R+ +  ++    + EI +GL+ A   ID +I I+R        K           
Sbjct: 359 FETATRKYTTLLKKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGI 418

Query: 415 -------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                    M ++   TE Q DAIL +RL  L  LE   +  E +  +A   K + +L +
Sbjct: 419 NFKSRESKAMAAQLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYEDILEN 478

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                  I  ++ ++K+ F         R T  +    + A  ++  +E+  +  ++   
Sbjct: 479 HDSMAMVIQSDLNKIKKEFK------ADRKTVID--NRETAVYEEKPVEEMDVAFIMDRF 530

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585
           G+ +++ + + + +    +     K +     T ++   +  G  +T+ A +L  G  R 
Sbjct: 531 GYAKTIDASTYEKNKETIQAE--FKYSFIMKNTGKVCFFTNTGNLHTVKAMDLPQGKMRD 588

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKL---LVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  + + +  ++ +      S   L   L  +      IV+  E    +++     
Sbjct: 589 KGIPIDNVSNFDTAKETIIMAASQSDLNLYRILFTTKMSMMKIVDGGEFD-VSKRTVAAT 647

Query: 643 KVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISD 699
           K++  +++  V  +     V +   +   L F +D IPE  +   GVR     K+  I D
Sbjct: 648 KLADGDEVVNVEILHEQKTVILRSNDGFFLRFYVDTIPEKKKAAVGVRGMRLGKNDFIRD 707

Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           V      E      +     +++       +  R   G+ V
Sbjct: 708 VFYLNDMEEKAIEHN-----DKTLELGHLKVTSRDTKGTKV 743


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/740 (29%), Positives = 384/740 (51%), Gaps = 29/740 (3%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE R++++A ++L  + +D V F   +++ + EP + PS FPNLL NG +GIA G ATS
Sbjct: 122 YTETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATS 181

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN  E+ +A +  ID+P+ SIEKL++    PDFPTGG  +        +++ G G F
Sbjct: 182 IPPHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGE-IHDLNGCANAHKTGEGKF 240

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +RA    +        I++  IPY+  K+ +I++I ++I  K +  L ++RDES     
Sbjct: 241 VIRASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGV 300

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    + ++ + +   ++  + +E  +      +   R P ++ L   L   + H  +
Sbjct: 301 SIIIDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLD 359

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427
           V+ +   + +  +  R+EI++GL+     IDEII IIR  D     K  ++  F+ T NQ
Sbjct: 360 VINKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQ 419

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AI+ +RL +L + + + +++E ++L  + + +   + S + + N +  ++ E K+ F 
Sbjct: 420 AEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEF- 478

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALH 544
                G +R T            +  MIEK+ + +VIS  G+I+ +   S + S    L 
Sbjct: 479 -----GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELG 533

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K  D L      ++ DRIL++++  K   L A  +  +  +  GE +      + N+ +
Sbjct: 534 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 593

Query: 603 VTAFVYD-----STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKV 656
           V  +V +        +L++ S       +E +E+ +    K  + +K++  + +     +
Sbjct: 594 VAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLI 653

Query: 657 TGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW- 711
             DH   V  + +   +L+F + +I  ++R  KG+++   K       I      G +  
Sbjct: 654 KKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQ 713

Query: 712 --IDSAGRSYNRSENDLLGW 729
             +D   + ++ SE  L   
Sbjct: 714 LFLDQGNKCFSISELKLSKR 733


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/613 (31%), Positives = 336/613 (54%), Gaps = 22/613 (3%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M + G  +   ++KSA+ V
Sbjct: 1   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG  HPHGD SVYD++VRL+Q +  R PL+  QGN G+ID D AAA RYTEAR++ +
Sbjct: 61  GNVIGNYHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +D+D V     +++ + EP V P+ +PNLL NG +GI+ G AT IP HN++E+
Sbjct: 121 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 180

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC-V 258
            +A +  I  P  S+EKL+E+I GPDFPTG I VE ++ I+ +++ GRG   VR+    +
Sbjct: 181 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGAI-VEGKQGILNAFKSGRGKVIVRSTSEMI 239

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE       IV+TEIPY+V K+ L+ KI E+   + I  + ++RDES      ++    +
Sbjct: 240 EEKTMNK--IVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKK 297

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            ++    +  ++  +D++  +  NM  +   + P +M +  IL  ++AH+ +V+ R S  
Sbjct: 298 DINVQNTLNYLYKNTDLQKNYNYNMVAI-KDKRPVLMGVIEILDGYIAHQIDVVTRSSIH 356

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435
            +   + R  I++GL+ A   +DE++  IR        K  ++ ++  +E Q +AI+ L+
Sbjct: 357 DLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYGFSEKQAEAIVMLQ 416

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L   +   +++E   L      ++++LNS +     I  +++ +K+ +         
Sbjct: 417 LYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVIIDQLKGIKKKY------PMP 470

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLK 552
           R +       +    ++AMI  E I V I+  G+I+ + + S+  S       KE D L 
Sbjct: 471 RLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSIKASEGIPFGKKENDYLV 530

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
               A+T D +LL +  G    +P   +     +  G+ +  L+ LN  + I+   +   
Sbjct: 531 SMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYLVKLNAGEKIIGTILVKD 590

Query: 611 TC---KLLVVSSK 620
                 +++ + K
Sbjct: 591 FNLPLYVMLATKK 603


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 228/801 (28%), Positives = 370/801 (46%), Gaps = 106/801 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V++ +    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M +M L     +
Sbjct: 16  VKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLTPDKPY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQ F  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  + + ++E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMATNMI 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+   A  L+ +P+ + + L+ YI GPD P GGII+  RE I E+Y  GRG F  
Sbjct: 195 THNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGGIIM-GREGIKEAYESGRGSFST 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+P+ V   +++E+I++ +  K++  +    D +   +   
Sbjct: 254 RATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDLTDRHNGTR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + +E  F +N   L  G  P  M L  +L  W+ HRREV
Sbjct: 314 LVIEIKTGFDPHAVLGQLFKYTPLEDSFTINNVALV-GGRPHTMGLKELLDVWIQHRREV 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RRS +R +  + R+ ++ GLL+A ++IDE+I +IR   N D  K  +++ F L E Q 
Sbjct: 373 ITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLMAVFDLDEIQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   +++SE D+L     ++D +L S +++   +   +  V   +  
Sbjct: 433 QYILDLRLRRLTKMSRIELESERDDLQRAIAELDEILASDQRRDAVVIESMDHVVRDYGT 492

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMI--------------------------------- 515
                 RRT   +V      +   A                                   
Sbjct: 493 P-----RRTVLLDVDEEGAYSPVPAAELGQEVDASIKQGEALSSALATASLAASAPIPAS 547

Query: 516 --------EKEPITVVISNRGWIRSLKSHSVDLSALHFKE-----GDSLKIALHAHTTDR 562
                   E +P  +++S    I    + ++DL      +      D ++  + + T   
Sbjct: 548 AGSEGLKLEDKPCAIILSADRLIGRASATALDLWRSRPLDAVRQPHDQIRTVIPSSTLAS 607

Query: 563 ILLLSTDGKAYTLPAGNLL-----------SGRG-----------------HGEAIQLLI 594
             ++++ G+       +L            S +G                  GE    +I
Sbjct: 608 YGIVTSAGRLVLAHTADLPLLHLDPDKLSLSAQGGVRVDDLLTHTESTEAVAGEKAITVI 667

Query: 595 DL-------------NHNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTR-KGK 639
            L             + ++    A    D    L + +++G   IV+   + + T     
Sbjct: 668 PLAGSKEHEGESEDKDKDESKEKAAGGQDGPAPLAIGTARG---IVKRWNMDSPTTMDSW 724

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGI 697
           + + +  ++ +      T  D +  +  +  LL ++ D +    R   G+      DG  
Sbjct: 725 SIIDLKDDDSLVFAAPATDADRLVFISSDSSLLTYTADNVRPQGRNAGGMGGIKLADGSR 784

Query: 698 SDVICFKICEGLTWIDSAGRS 718
                      L W+ +    
Sbjct: 785 VLAFAVVPAGQLAWVPAQEEG 805


>gi|332711871|ref|ZP_08431801.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
 gi|332349199|gb|EGJ28809.1| DNA topoisomerase IV subunit A [Lyngbya majuscula 3L]
          Length = 753

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/687 (29%), Positives = 340/687 (49%), Gaps = 41/687 (5%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAV 152
           +Y+++VRL Q F  RYPL+ G GNFG++D D  AA RYTE R++ V  + +L  + E  V
Sbjct: 1   MYEAMVRLVQDFSTRYPLLDGHGNFGSVDNDPPAAMRYTETRLSPVGAQALLSEIGEATV 60

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D ++    EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P +
Sbjct: 61  DFIDNFDSSQQEPVVLPAQLPVLLLNGCSGIAVGMATNIPPHNLAEIVDGLIALIDRPNL 120

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW------ 266
             EKL E I GPDFPTGG IV + E I ++Y  GRG   +R    +E +  G        
Sbjct: 121 PDEKLWELIPGPDFPTGGEIVAA-EGIRDAYTTGRGSIPIRGITKLETIQVGRKKRGQRR 179

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IVV+E+PYQV K+  IEK+A L+   RI  + DIRDES  +   V+    R   P  ++
Sbjct: 180 AIVVSELPYQVHKAAWIEKVAALVNQGRIEGISDIRDESDREGMRVVVELKRDAQPSAVL 239

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + ++  + ++T F   +  L  G+ P+ + L  +L+ +++ R + L R+ ++     +RR
Sbjct: 240 QQLYKQTPLQTNFGAILLTLVDGQ-PRQLTLRQLLESFISFREQTLTRQYTYEQSQKERR 298

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           + ++ GLL +   +D +I I+RN       K  + ++ +L+E Q DAIL + +R L  LE
Sbjct: 299 LHLVDGLLASLNQLDAMIDILRNAPDGTTAKLSLQNQLNLSEIQADAILAMPMRRLTGLE 358

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL----------- 492
             ++++E + L    E++  LLN  ++    +  ++R +K  +                 
Sbjct: 359 REKLETEGEELSQRLEQLHQLLNDRRELLKALKKDLRSLKRKYGDPRRTIINSIASTEKK 418

Query: 493 ------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  + R+      +    TL  A  E E   +  ++ G+++   + +        K
Sbjct: 419 LEQPTAAQPRSKKSAQPQKTPDTLPNAPTEPEQTLLEFTSHGYVQRQSATTQPKLPKSIK 478

Query: 547 EG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           +G D +  A    TT  +++++  GKAY +   ++    G  + I L+  L ++    T 
Sbjct: 479 QGEDFVVQAQLLLTTQELMVITGSGKAYPVKIRDIPPAAGRKQGIPLVKLLPNSAQSETV 538

Query: 606 FVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658
             +           L++++ +G    V  SE+   T +G    K  ++++++   +  T 
Sbjct: 539 VAHFRVPDDLENFTLVLLTHQGKIKRVSVSELTKLTNRGMLLTKFRNDDQLQYANLSTTA 598

Query: 659 DHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
             V V   N +LL F ++   +P M R  +G +    K G    V C  + E    +  +
Sbjct: 599 TQVVVATSNGRLLRFEVNDKQLPIMGRSAQGNQALRLK-GKEKLVGCVVLGEEENLLLVS 657

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPK 742
            + Y +        L  RG +G+   +
Sbjct: 658 EQGYGKRLPVQAIRLANRGDLGTQALQ 684


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 210/745 (28%), Positives = 374/745 (50%), Gaps = 25/745 (3%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  + N+    EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M 
Sbjct: 1   MKKLDNNMKKNEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMW 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +GL    AFKKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID
Sbjct: 61  MLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSID 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D AAA RYTE R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT G
Sbjct: 121 DDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IA G AT IP HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E+
Sbjct: 181 IASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +  G+G   + +++ +    +    I + EIP+ V KS L+++I E+   K+I  + D+ 
Sbjct: 240 FETGQGKVVLVSKYKIINEPKYK-AIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVI 298

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D+S      +L    +  + +L++  +   + M+  +  N   +     P+++ +  +L 
Sbjct: 299 DQSDRTGISILIELEKEANIELILNYLLQKTQMQISYSYNSVAIHN-YTPKLLSIYKMLD 357

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMV 418
            +L H +E+  +   F ++  ++R+EI+KG L      DE+I IIRN D  K      +V
Sbjct: 358 YYLNHLKEIKTKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALV 417

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             F  T  Q  AI  +RL  L ++++    +E + L+ +  K+ +LL +  +    +   
Sbjct: 418 QNFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSI 477

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           ++E+K  F      GR R T            Q+ +I+ E    VI+ +G  + + +   
Sbjct: 478 LKEIKTKF------GRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVF 531

Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
              D+S +  KE D         T +++L+ ++ G    +P   +           L ID
Sbjct: 532 ESNDISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQID 591

Query: 596 --LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEK 649
             L  ++ I++A     +     + +++  G    +   ++ ++  +K    +K+  +++
Sbjct: 592 YLLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKDLEVSRFKKTILAMKIKQDDQ 651

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +           +A+     +   +S  ++P       GVR+   K+G   D       +
Sbjct: 652 LIGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGEYIDHFVLGQSD 711

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGK 732
              ++  A   + R+ +    + G 
Sbjct: 712 D-VFVFVAKSGFVRNISLSSIYYGN 735


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 186/508 (36%), Positives = 299/508 (58%), Gaps = 17/508 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    +   ++L  + ++ V +   ++  Y+ YA+S I  RA+P++RDG KPVHRR+++A
Sbjct: 1   MTDTTLPPDDSL--DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     +  KSAR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQGNFG+
Sbjct: 59  MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGS 118

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+
Sbjct: 119 PGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGS 178

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESR 236
            GIAVGMAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S 
Sbjct: 179 GGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS- 237

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   ++Y+ GRG  R+R    VEE  RG   +V+TE+PYQV     I  IAE +   ++ 
Sbjct: 238 QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLA 297

Query: 297 LLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
            + +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ +
Sbjct: 298 GISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG-VPRTL 356

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DK 412
            LD +++ ++ H+ +V+ RR+++R++  + R  IL+GL+ A   +DE+IA+IR     D 
Sbjct: 357 RLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDI 416

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++    + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q 
Sbjct: 417 ARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQR 476

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +  E+ E+ +          RRT   
Sbjct: 477 GIVRDELAEIVDRHGD-----DRRTRII 499


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 235/761 (30%), Positives = 383/761 (50%), Gaps = 64/761 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     ++K AR+VG+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144
            HPHGDQ+VYD+LVRL Q F  R+PL+ G GNFG++D D  AA RYTE R+  +A   +L
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D VDF   ++    EP V P++ P LL NG SGIAVGMATSIP HN+ E+ +  +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ALI  P +S E+LLE I GPDFPTGG ++ S   + ++Y  GRG   +R     EEV  G
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLS-SGLQDTYLQGRGSIPMRGVAHTEEVQLG 239

Query: 265 -----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VVTE+PYQ+ K+  IEK+AE +   +I  + DIRDES  D   V+    R 
Sbjct: 240 KGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRD 299

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            +P+ +++ +   + +++ F   +  L  G+  Q+     +   +L +R   L RR+S  
Sbjct: 300 AEPEKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQT-FLDYRELTLIRRTSHA 358

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           ++  + R+E+++GL+ A  N+  +IA+I+        +  ++ R  L E Q DA+L + L
Sbjct: 359 LRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVRLDLNERQADAVLAMPL 418

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R L  LE+  ++ E+DNL  EKE++  LL +  Q  + +  E++ +K+ FS       RR
Sbjct: 419 RRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLLDAMVAELKTLKKRFSTP-----RR 473

Query: 497 TTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGWIRSLKSHSVDLSAL 543
           T   E   A  A    +      +              ++I   G ++ +    +    L
Sbjct: 474 TRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLIQADGQVKIVTPQVLGR--L 531

Query: 544 HFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTLP---AGN--------LLSGRG 585
           HF +   +       ++ L      R+L +S +G+   +    AG         L SG  
Sbjct: 532 HFGDPCPVSDAPSPARVILPIEPPPRLLAISANGRVALVRWEFAGQQPGALERFLPSGL- 590

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            GE I  +  L   +    +    S+              +  +E++  + +  + +K+ 
Sbjct: 591 EGEPIVAIAPLPMQESSDLSLGLLSSDGRF--------KRLPLAEVLELSGRATSVVKLK 642

Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVI 701
              ++K  V     H + +V +  ++L   I++  +P M R  +G    + +      +I
Sbjct: 643 DGVQLKAAVICHEHHDLILVSDIGRMLRLPINEDVLPRMGRLAQG--PMTMRLLPGEHLI 700

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                   T +  + +      +       +RG +GS+  +
Sbjct: 701 GALCPTKPTALLVSEQGRLARIDLTSIRSSQRGDLGSMAIQ 741



 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 11/157 (7%)

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
           +   LP   +L   G   ++   + L     +  A +      L++VS  G    +  +E
Sbjct: 619 RFKRLPLAEVLELSGRATSV---VKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPINE 675

Query: 631 IIANTRKGKTF-----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
            +   R G+       +++   E +   +  T     +V E  +L    +  I    RG 
Sbjct: 676 DV-LPRMGRLAQGPMTMRLLPGEHLIGALCPTKPTALLVSEQGRLARIDLTSIRSSQRGD 734

Query: 686 -GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
            G        G    +       GL  + S  + + R
Sbjct: 735 LGSMAIQLV-GDTDRITGLTEASGLIGMVSTEQRHGR 770



 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNH 598
           S +  K+G  LK A+  H    ++L+S  G+   LP     L       +   + + L  
Sbjct: 637 SVVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPINEDVLPRMGRLAQG-PMTMRLLP 695

Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-EEKMKLVVKVT 657
            + ++ A    +    L+VS +G    ++ + I ++ R     + +    +  ++     
Sbjct: 696 GEHLIGALC-PTKPTALLVSEQGRLARIDLTSIRSSQRGDLGSMAIQLVGDTDRITGLTE 754

Query: 658 GDHVA-VVGENRK 669
              +  +V   ++
Sbjct: 755 ASGLIGMVSTEQR 767


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 250/833 (30%), Positives = 385/833 (46%), Gaps = 119/833 (14%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFK 73
           E V+ VSL  A   RYL YALS I  RA+PD+RDG KPV RRI++AM  ++       F 
Sbjct: 27  EVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWADLKAGATGRFV 86

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA +VGEV+   HPHGDQS+YD+LVR+AQ F  R PLI G GNFG+IDGD  AA RYTE
Sbjct: 87  KSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSIDGDPPAAMRYTE 146

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  AE +L  + E  V+FR  Y     EPVV P+++PNLL NG SGIAVGMAT+IP 
Sbjct: 147 ARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASGIAVGMATTIPP 206

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN++E+C A +AL+DNPEI+I+KL  ++ GPDFPTGG+++ S E +   Y  G G  ++R
Sbjct: 207 HNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGIYANGHGTIKLR 266

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
             W  E        +V+T IPY V+K  L+ KI ELI   ++P L +++D S E +RIVL
Sbjct: 267 GTW--EPHPERKEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVKDLSDEAIRIVL 324

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD--------------- 358
             +    + +  M  ++  + ++    +NM  L      Q +  +               
Sbjct: 325 DLRP-GANAEAAMAYLYKNTSLQINHHVNMTCLLPALPNQRVGDNADATAVRATLADELE 383

Query: 359 ------------------------------GILKEWLAHRREVLFRRSSFR-------MQ 381
                                               +  R ++    S F        ++
Sbjct: 384 PFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSHFLDFRMEVVIR 443

Query: 382 AIDRRVEILKGLLIAY-------LNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
            +   +  ++  +            +DE I +IR  +      P + +RF L+  Q DAI
Sbjct: 444 KLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLATRFGLSALQADAI 503

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L  +L  L KLE  +I  EL    A  E++  LL     +   I  +++ + + +     
Sbjct: 504 LETKLYRLGKLEIDEILRELAERRARAEELRRLLGDEAARKGLIRDDLKRIAKTYGTP-- 561

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
               R T  E    +    ++  I  E   V+++  GWI+  +S + D+ ++  ++GD +
Sbjct: 562 ----RRTRIEGPAPEVEFREEDYIVDEDAWVIVTRDGWIKRQRSFT-DIESIRVRDGDRV 616

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                A     + +L++ G AYT    +L+   GHGE I  L  L  N+ IV    +D  
Sbjct: 617 GWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVGVVCHDPR 676

Query: 612 C---------------------------------------KLLVVSSKGNAFIVEESEII 632
           C                                        ++VV++ G A     + + 
Sbjct: 677 CLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVVTAGGKALRFSLAALA 736

Query: 633 A-NTRKGKTFLKVSSE---EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM-SRGKG 686
           A +TRKG+  ++   +   +++   +   G D V +   + +++ F++ +IP +    KG
Sbjct: 737 AVSTRKGRAVMRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIRFAVTEIPVVSGPAKG 796

Query: 687 VRLQSYKDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           V     +D     + +        T      R            L  RGG G+
Sbjct: 797 VLAIRLQDETDRVLGVLLTDRAQDTLTVKTSRGGTLELKAGKHPLTSRGGKGT 849


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/734 (28%), Positives = 370/734 (50%), Gaps = 25/734 (3%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   SL   + ER++ Y+   I++RAIPD+RDG KPV RRI+++M  +GL    AFK
Sbjct: 5   EEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAFK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN G+ID D AAA RYTE
Sbjct: 65  KSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL NGT GIA G AT IP 
Sbjct: 125 TRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +A +  + N      K+ + I GPDFPTGGII +++  I E++  G+G   + 
Sbjct: 185 HNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTK-GIDEAFETGQGKVVLV 243

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +++ +    +    I + EIP+ V KS L+++I E+   K+I  + D+ D+S      +L
Sbjct: 244 SKYKIINEPKYK-AIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISIL 302

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  + +L++  +   + M+  +  N   +     P+++ +  +L  +L H +E+  
Sbjct: 303 IELEKEANIELILNYLLQKTQMQISYSYNSVAIHN-YTPKLLSIYKMLDYYLDHLKEIKT 361

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVD 429
           +   F ++  ++R+EI+KG L      DE+I IIRN D  K      +V  F  T  Q  
Sbjct: 362 KEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQAT 421

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI  +RL  L ++++    +E + L+ +  K+ +LL +  +    +   ++E+K  F   
Sbjct: 422 AIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSILKEIKTKF--- 478

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFK 546
              GR R T            Q+ +I+ E    VI+ +G  + + +      D+S +  K
Sbjct: 479 ---GRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESNDISNISLK 535

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVT 604
           E D         T +++L+ ++ G    +P   +           L ID  L  ++ I++
Sbjct: 536 EKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETIIS 595

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
           A     +     + +++  G    +   ++ ++  +K    +K+  ++++          
Sbjct: 596 AIEIADFSENQFVCLITKNGMGKRISLKDLEVSRFKKTILAMKIKQDDQLIGAKLSDNYQ 655

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +A+     +   +S  ++P       GVR+   K+G   D       +   ++  A   
Sbjct: 656 DIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGEYIDHFVLGQSDD-VFVFVAKSG 714

Query: 719 YNRSENDLLGWLGK 732
           + R+ +    + G 
Sbjct: 715 FVRNISLSSIYYGN 728


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 227/789 (28%), Positives = 363/789 (46%), Gaps = 85/789 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+    L   +   +LAYA S I  RA+PD RDG KPV RRII+ M EMGL    ++
Sbjct: 16  IKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMGEMGLSPDKSY 75

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 76  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 134

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  + + + E+ VDF   Y+ +  EP V PS  PNLL NG SGIAVGMAT++ 
Sbjct: 135 EARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMATNMV 194

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  L+ +P  S E L+ Y+ GPD P GGII+  RE I E+Y  GRG F  
Sbjct: 195 THNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGGIIM-GREGIKEAYTSGRGSFLT 253

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+P+ V   +++E+I+E I  K++  +    D +   +   
Sbjct: 254 RAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAIDLTDRHNGTR 313

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP  ++  +F  + +E  F +N   L  GR    M +  +L  W+ HRR V
Sbjct: 314 LVIEIKTGFDPRAVLGQLFKYTPLEDSFTINNVALVNGRPH-TMGIKELLSVWIEHRRTV 372

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS +R +  + R+ ++ GLL+A ++IDE+I +IR  D     K  +++ F L + Q 
Sbjct: 373 VTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLMAVFDLDQIQA 432

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK-QQWNQIACEIREVKEIFS 487
             IL+LRLR L K+   +++SE D+L     ++D +L+S + +    I    R V+E   
Sbjct: 433 QYILDLRLRRLTKMSRIELESERDDLQRLIAQLDQILSSTQVRDMEVIKSMDRAVQE--- 489

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMI-------------------------------- 515
                  RRT   +   +                                          
Sbjct: 490 ---WDTPRRTVLLDQDESGSYVAVPTARSGSGKSESVQAADLAGSSSKNAASSLSVQTSA 546

Query: 516 ------------EKEPITVVISNRGWIRSLKSHSVDLSALHFKE-----GDSLKIALHAH 558
                       E +P +++++  G I      + DL     +       D +   + + 
Sbjct: 547 LASAQAAGSLELEDKPCSIILTADGLIARSSPAAKDLWESRTEARPRGSHDQIVAIIRST 606

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-----------SGRGHGEAIQLLIDLN--HNQDIVTA 605
           T     ++++ G+     + +L                  E +          +++++T 
Sbjct: 607 TRSSYGIITSHGRMVLAHSADLPNLVLQENLTMEGAVKAQELLHNTQSTESSDDEEVITI 666

Query: 606 FVY----DSTCKLL-VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659
                  D+  KLL + + KG             T    + + +  ++++         D
Sbjct: 667 LPLPSPNDTKIKLLAIGTRKGIVKRWNGD--SPTTMDSWSIIDLKDDDRVVFAAPADDTD 724

Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            +  +  +  LL +    +    R   G+                     + WIDS+   
Sbjct: 725 RLVFISSDSSLLTYEASAVRPQGRNAAGMGGIRLAPHCQVLAFNVIPAGKIAWIDSSSDG 784

Query: 719 YNRSENDLL 727
                + L 
Sbjct: 785 QEAKSHSLQ 793



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 86/254 (33%), Gaps = 36/254 (14%)

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVI----SNRGWIRSLKSHSVDL----SALHFKEG 548
           T   E S  ++      +       + +    + +G ++     S       S +  K+ 
Sbjct: 652 TQSTESSDDEEVITILPLPSPNDTKIKLLAIGTRKGIVKRWNGDSPTTMDSWSIIDLKDD 711

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAF 606
           D +  A  A  TDR++ +S+D    +L      + R  G     +  I L  +  ++   
Sbjct: 712 DRVVFAAPADDTDRLVFISSDS---SLLTYEASAVRPQGRNAAGMGGIRLAPHCQVLAFN 768

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-G 665
           V             G    ++ S        G+     S +    +VV + GD  A+   
Sbjct: 769 VIP----------AGKIAWIDSSS------DGQEAKSHSLQASGAVVVTIAGDSHALEGT 812

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           EN    +  +++ P   R  KGVR Q +     + +  +     +    S+G     S  
Sbjct: 813 ENGSAKVTPLEKFPSKGRNTKGVRSQRFHKSENTLIKAWTGPYPVLASTSSG-----SPV 867

Query: 725 DLLGWLGKRGGVGS 738
            L     KR   G+
Sbjct: 868 SLPEPTAKRDAAGT 881


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/780 (28%), Positives = 357/780 (45%), Gaps = 87/780 (11%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTPEHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P  +++ L++ + GPD+P G  I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGG-GIIIGRSGIREAYETGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R++  +E V      I+VTE+P+ V   R++E+I++ I A+++  +    D +   +   
Sbjct: 255 RSKTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L  W+ HRR V
Sbjct: 315 IVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPH-TMGLRELLDVWILHRRTV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS FR+     R+ +++GLL+A L+IDE+I +IR+ +     K  ++S F L E Q 
Sbjct: 374 IRRRSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSKLISVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   +++ E ++LL + ++++ +L+S  Q    +  E+    + +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEILSSASQLDKVVIAEMDYAVKQWDT 493

Query: 489 STDLGRRRTTFCEVSRAD------------------------------------------ 506
                 RRT   +                                               
Sbjct: 494 P-----RRTILLDEQEDGSFTPVCTKNSKEVNSDSAMDAVIAANQLTNAQADVAAAASAA 548

Query: 507 ------KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-SALHFKEGDSL-KIALHAH 558
                  AT     +  EP  V +S  G I      + +   +      D+         
Sbjct: 549 RKSGDTDATSAALQLSDEPCAVALSTSGLIARTSVETFNRWQSHSSNIFDTPCLNVFTTT 608

Query: 559 TTDRILLLSTDGKAYTLPAGNLL----------SGRGHGEAIQLLI------DLNHNQDI 602
           T     L+++ G+       +L               +G     L+      D    + +
Sbjct: 609 TRATYALITSAGRLVIAHVADLPHLNQGDENVSESLSNGVKASELLTSTQSTDPIRGEKV 668

Query: 603 VTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG 658
           V A      DS   L + +  G   +V+     + T     + + +   + +        
Sbjct: 669 VAAIALSESDSKTPLAIGTKNG---VVKRWNFESPTTMDSWSIIDLKDNDSVINAALAND 725

Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
            D +  +  +  LL F   Q+    R   G+      +              + W    G
Sbjct: 726 EDRLVFISSDSSLLTFDAKQVRAQGRSSAGMAGIRLNEECTVSAFAVVAKNDVEWNYEEG 785



 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 30/178 (16%)

Query: 525 SNRGWIRSLKSHSVDL----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +  G ++     S       S +  K+ DS+  A  A+  DR++ +S+D    T  A  +
Sbjct: 687 TKNGVVKRWNFESPTTMDSWSIIDLKDNDSVINAALANDEDRLVFISSDSSLLTFDAKQV 746

Query: 581 LSGRGHGEAIQLLIDLNHNQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              R  G +   +  +  N++  V+AF                  +V ++++  N  +G+
Sbjct: 747 ---RAQGRSSAGMAGIRLNEECTVSAFA-----------------VVAKNDVEWNYEEGE 786

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
             L  +S     +V  + GD  A+   EN    I  ++  P   RG  GVR Q +  G
Sbjct: 787 NGLFSASG---SVVFTLAGDSDALAGTENGAAKITPLEMYPTKGRGTGGVRSQRFLKG 841


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/496 (42%), Positives = 297/496 (59%), Gaps = 40/496 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 459 EKIDSLLNSGKQQWNQ 474
            ++  +L S  +    
Sbjct: 486 AELLHILGSADRLMEV 501


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 220/810 (27%), Positives = 360/810 (44%), Gaps = 122/810 (15%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   +   +L YA S I  RA+PD RDG KPV RRI++ M +M L     +
Sbjct: 17  VKEHIVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLPNRPY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ S++ L+EY+ GPD+P G  I+  R+ I ++YR GRG    
Sbjct: 196 THNLGEVVAAAKYVMKHPDASLDTLMEYVPGPDWPGG-GIIIGRDGIRDAYRDGRGTVTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           RA   +E V      IVVTE+PY V   R++E+I+E +   ++  +    D +   +   
Sbjct: 255 RATTHMENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DPD ++  +   + ++  F +N   L  GR    + L  +L  W+ HRR V
Sbjct: 315 IVIEIKTGYDPDAVLVQLLKHTPLQENFTINNVALVDGRPH-TLGLRAMLDVWIDHRRNV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQV 428
           + RRS +R      R+ ++ GLL+A ++IDE+I +I   ++ D  K  ++  F L + Q 
Sbjct: 374 IRRRSEYRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQVFDLDDIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+L     +++ +L S +     +  E+ E    ++ 
Sbjct: 434 QYILDLRLRRLTKMSRIELETERDDLRRSIAELEGILASAQALDEVVVREMDEAVAAYNT 493

Query: 489 STDLGRRRTTFCEVSR-------------------------------------------- 504
                 RRT   + +                                             
Sbjct: 494 P-----RRTVLLDTADDGTLHPVSAHGDDTLSASALSAARKAQTLQATAQEVHEASKAKG 548

Query: 505 -ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-----DLSALHFKEGDSLKIALHAH 558
                 +Q   IE EP  + +S  G I  +   ++       S +     D ++ A    
Sbjct: 549 NDAANMVQALQIEDEPCVIALSASGLIARVPVQALSVLEGRRSDMPRTAHDMVRCAFATT 608

Query: 559 TTDRILLLSTDGKAYTLPAGNLLS-GRGHGEAIQLL-----------------IDLNHNQ 600
           T     L+++ G+     A  L S      + +  +                  D    +
Sbjct: 609 TRSDYALITSAGRLVLAHAVELPSLALATVDGVTNVDLTGGIHAEELIGATQHTDPIDGE 668

Query: 601 DIVTAFVY-------------DSTCKLLVVSSKGNAFIV--------EESEIIANTRKGK 639
            ++ A                D+       +  G+            + + +   TR+G 
Sbjct: 669 RVIAAVPMGNANTTARSVNTNDTDN----AADSGDTSATADAPTTPAQLAPLALGTRRGL 724

Query: 640 ---------------TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR 683
                          + + +   +++        G  +  V  +  LL F    +    R
Sbjct: 725 VKRWNREAPTTMDSWSVIDLKDGDEVLAARDAPDGSRLVFVSSDSSLLTFDAKHVRPQGR 784

Query: 684 GK-GVRLQSYKDGGISDVICFKICEGLTWI 712
              G+      +G  +        + L WI
Sbjct: 785 NSGGMAGIRLAEGCEAIAFSVVEPQELPWI 814


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/683 (32%), Positives = 374/683 (54%), Gaps = 34/683 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N+   N   + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++ 
Sbjct: 1   MSKKNM---NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYG 57

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
             ++       + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+
Sbjct: 58  AYKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGS 117

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           IDGD+AAA RYTEAR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG 
Sbjct: 118 IDGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGA 177

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG+AT+IP HN++E  +A +A IDN +IS ++L+ YI GPD PTGGII+   ++++
Sbjct: 178 FGIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALL 236

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
            +Y  G G   +RA+  +E++    + I++ E PY+  KS++++ I+E+   K+    + 
Sbjct: 237 SAYEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALE 296

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
            + DIRDES  +    +    +S + ++   +++ +F  ++++     NM  ++ G+ P+
Sbjct: 297 NITDIRDESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGK-PE 355

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + L  ILK ++ H++EV+ RRS   ++   +R  I++G + A   +DEI+  IR+    
Sbjct: 356 TLGLKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSK 415

Query: 414 K---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           K     +V++F  +  Q  AI+ L L  L  LE    + E  NL  + + ++ +L+S K+
Sbjct: 416 KDSEQNLVNKFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKKIKALEKILSSEKE 475

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
            +  +  E+ EVKE +         R T             + +I  E I + +SN G+I
Sbjct: 476 LFKVVKKELEEVKEKYGDP------RRTEIVHDDEQAKIDIEELILDEDIVITLSNEGYI 529

Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--G 583
                +  +  +  +  + ++EGD     L+ +T D +++ +  G  Y +   N+     
Sbjct: 530 KRVADKYYRRINPKVEDIEYREGDFNTYVLNGNTKDNMMIFTNQGNLYQIRISNIPEMKW 589

Query: 584 RGHGEAIQLLI-DLNHN-QDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKG 638
           +  GE +  LI  L+ + + I+  ++      +   +  +++G        +   N  K 
Sbjct: 590 KEKGERLDTLIKSLDIDKEKIIDIYINSELLPSKSFMFFTNRGVIKKSSLDKFKTNYSK- 648

Query: 639 KTFLKVSSEEKMKLVVKVTGDHV 661
              LK+   EK+  +  V   HV
Sbjct: 649 LLALKLKDNEKLIDIKLVNTGHV 671



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 34/269 (12%)

Query: 497 TTFCEVSRADK--ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           T    +S  D+  +             V I+  G I+     +                 
Sbjct: 702 TQIFNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINYKN-----------FYG 750

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFV---YD 609
            +A++  R+++    G  Y +PA  + +    G  +  LID    + ++IV  +      
Sbjct: 751 CYANSLSRLIIFGNKGNVYCVPAYMIQNIDSKGIKLNDLIDDFKQNEEEIVNIYSISELS 810

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGE 666
            +  +   +  G        E        K +     E+ +  V+    D    V ++ +
Sbjct: 811 DSTSVYFFTKSGYVKRTSLEEFNGENPCIKGYKFKKEEDTIINVLLANNDDKKDVILITK 870

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           N   + F  + I  M +   GV   S +D   +         E    I+  G   N+   
Sbjct: 871 NAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKEEKDVINIDGEFKNKLNI 930

Query: 725 DLLGWL-----------GKRGGVGSLVPK 742
           +    +             R G G  +  
Sbjct: 931 ECKDRIEAEIILENIKNQNRAGKGKKLIN 959


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/598 (26%), Positives = 284/598 (47%), Gaps = 44/598 (7%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVES 242
            AT+IP HN++E+   A   ++NPE S E+LL    E I GPDFPTG ++V  R+ I E+
Sbjct: 11  WATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEA 69

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG   +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+R
Sbjct: 70  YRTGRGSITMRAVIEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVR 128

Query: 303 DE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE S+   + ++    R     +++ +++  +D++T F  NM  L  G VP+ + LD  +
Sbjct: 129 DETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFI 187

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
           + W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  D     +  ++
Sbjct: 188 RHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHGLM 247

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               + E Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E
Sbjct: 248 DLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVSEE 307

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           +  + E +        R+T        +     + +I +E I V ++  G+I+       
Sbjct: 308 LAAIVEKYGD-----DRQTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDY 359

Query: 533 --LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGE 588
              K     +     KE D +     + T   +L  +  G+ Y +    L        G+
Sbjct: 360 RAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRVKGYELPDAGRDARGQ 419

Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  L+    ++   +I+    Y++   L++ +  G        +  +    G   + + 
Sbjct: 420 HVANLLAFQPDEAIAEILAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLR 479

Query: 646 -----SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGG 696
                S++++     V + D + ++ +  + + F+     +  M R   GV+  S+++G 
Sbjct: 480 SMEDGSDDELIGAELVSSDDDLLLISKKAQSIRFTASDETLRPMGRATSGVKGMSFREG- 538

Query: 697 ISDVICFKICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +++   +    T++  +    Y +  N     +  RGG+G    K     G  + +
Sbjct: 539 -DELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGA 595



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-----------LSALHFKEGD 549
           +   A    L     E  P  V+ +  G ++       D           L ++     D
Sbjct: 428 QPDEAIAEILAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRSMEDGSDD 487

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFV 607
            L  A    + D +LL+S   ++    A +  + R  G A   +  +      ++++  V
Sbjct: 488 ELIGAELVSSDDDLLLISKKAQSIRFTASD-ETLRPMGRATSGVKGMSFREGDELLSMNV 546

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAV 663
                 +   +  G A      E     R G   K    V     +   + V   D +  
Sbjct: 547 VRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILA 606

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----------KICEGLTWI 712
           +  +  ++   +++I E  R   GV+L +   G    V+            +  +G   +
Sbjct: 607 ITLSGGVIRTRVNEIRETGRDTMGVQLINL--GKRDAVVGIARNAEAGREAEEVDGDIVV 664

Query: 713 DSAGRSYNRSENDL 726
           D        +  D 
Sbjct: 665 DETAEGVATTGTDE 678


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 212/522 (40%), Positives = 299/522 (57%), Gaps = 45/522 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA S I  RA+PD+RDG KPVHRR+++A + +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  +   ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVG AT+IP HN+
Sbjct: 128 AKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +N   L     P++  L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINXVAL-HHGQPKIXNLKDIIAAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L +A  NID II +IR+   P                      
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                                 + LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            ++  +L S  +    I  E+  V+E F        RRT   
Sbjct: 486 AELLRILGSADRLXEVIREELELVREQFGDK-----RRTEIT 522


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 206/755 (27%), Positives = 370/755 (49%), Gaps = 28/755 (3%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++     + E +   SL   + ER+  Y+   I++RA+PD+RDG KPVHRRI++AMSE+G
Sbjct: 1   MNKEKEEIVERIINNSLDKIMAERFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     +KKSAR+VG+VIGK HPHGD SVYD++V ++Q +    PL+   GN G++D D 
Sbjct: 61  LTNDKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDP 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTE RM +V   +L+ + ++ V F   +++ + EP V P+ FPNLL NGT+GIA+
Sbjct: 121 AAAMRYTEVRMAKVCNYMLEDLKKNTVAFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAI 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT +P HN+ E+ EA +A +  P I+++ L+E+I GPDFPTGGI +   + + E++  
Sbjct: 181 GMATEMPPHNLNEVLEATIAKLRRPSITLDGLMEHIKGPDFPTGGI-IYGNKGVFEAFES 239

Query: 246 GRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           G+        +C  EV +      I +TEIP+ V KS+L+  I  LI  + I  L +I+D
Sbjct: 240 GKLEKEKIKLFCKYEVVKKDKLQFIEITEIPFGVVKSQLVYDIDVLINTETIDGLLEIKD 299

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +S  +   ++   +   + + ++  +   + M+  +  N  V+     P++M L+ +L+ 
Sbjct: 300 QSDREGIKIVITLSEEANVESIISFLLQKTSMQVNYSYNNVVIHNNS-PKLMGLNELLEA 358

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--- 420
           ++ H + +  R  ++ ++    R+EI+ G +      D++I +IR  +  K  ++     
Sbjct: 359 YIEHIKIIKTRTLTYDLEKYLLRLEIVLGFIKVSEIPDKVIKVIRATEGGKAAVIENLMN 418

Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            F+ T NQ  AI  LRL  L K ++     E  +L  +      LL+  K+  N +   +
Sbjct: 419 AFNFTTNQATAIAELRLYRLSKTDKEAFLIEQADLEKKIANTKELLDDEKKFVNYLILLL 478

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           +++ +      D+   R T            ++ ++++E + +  S  G+I+ L    VD
Sbjct: 479 KQMIK------DMPTPRRTQIFEEEFTFNHDKKDLVKEEIVNIAFSKLGYIKRLSQKVVD 532

Query: 540 L---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI 594
               S    KE D L     A+T    L+ +  G    +P   +   +    G  +   +
Sbjct: 533 SNDFSTFALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAFV 592

Query: 595 DLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKM 650
           DL   ++I+     +       +++ +  G     +  +  ++ T K  T + + +++++
Sbjct: 593 DLAPGENIINVIEVEDWNSPDFIVMATKLGFFKRTKIKDFEVSRTNKTYTAINIDNKDEV 652

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE- 707
             V    G   + ++        ++  +I     + KG +     +     V CF     
Sbjct: 653 INVAVSDGTKDILIITAMGFATKYNEAEISLYGPKAKGTKGVYLVNK--DFVACFTPTHF 710

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               I  +   Y +       +   +   G  + K
Sbjct: 711 NDIVIMISDDGYIKKMKSREIYYVPKTAKGKEIFK 745


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 229/767 (29%), Positives = 386/767 (50%), Gaps = 33/767 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E  + +SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     
Sbjct: 1   MAKERFQPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +  + +L  +D+  VDF   ++    EP V P++ P L+ NG SGIAVGMAT+
Sbjct: 121 TETRLAPIANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI    +ALI  PE+S +KL+E I GPDFPTGG I+ S   I E+Y  G+G  
Sbjct: 181 IPPHNINEIINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLS-NGIKETYLKGKGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        IV+TE+PYQV K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 PMRGITHIEEINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R +D +++ ++++  ++++  F   +  L  G+ P+ + L  +L  +L
Sbjct: 300 DRDGMRIVIELRRDIDHEIVKDTLYQKTNLQNNFSATLLALVNGQ-PKQLSLKRLLIIFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            +R   + +R+  +++    R+EIL+GL+ A  N+ ++I +I N       K  ++S   
Sbjct: 359 EYRELTIRKRTKNKLKQTLARLEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSELK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q + IL++ LR L  LE   + +E ++L   ++ +  +L +  Q  +++  E++ +
Sbjct: 419 LNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKNLREILENRSQLLSEMVNELKLL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K+ F               V+  +      A ++++     +   G++       V +  
Sbjct: 479 KKKFGSQRKTKLVEGGDELVAERNANLRPNAELQRKKAFESLPKDGYLLIQDDDQVKILR 538

Query: 541 ----SALHFKEGDSL-------KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
               + L+  E   L       ++        +IL ++  GK   L        +  G+ 
Sbjct: 539 PQILTKLNLTESCLLGEGPVPTRLLWPIAKQPKILAITNHGKIALLK-WEFAGSQ-PGQL 596

Query: 590 IQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
            + L      + I             L ++S+ G       +EII  + +  T LK+   
Sbjct: 597 NRFLPSGLEGEKITNLLPLLNTENLSLGLLSTDGRFKRTNLNEIIDISGRATTILKLKDG 656

Query: 648 EKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQSYKDGGISDVIC 702
             +K  +      H+ VV    +++   I++  IP M +  +G V ++ +    I   + 
Sbjct: 657 VFLKSALLCPLNGHLLVVTNIGRIIKLKINEESIPLMGKLAQGSVMIKLFPGENIIGALT 716

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
            K  E    I  + +      +        +G +G +      ++ +
Sbjct: 717 TKEKENCNIILISEKGTVIKHSLKSIKESSKGDLGEIGISFKDKNNQ 763



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 154/436 (35%), Gaps = 53/436 (12%)

Query: 283 IEKIAELIIAKR-----IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDME 336
           +E +  LI A +     I L+E+ +D     ++I+   K      + ++   +  L+++E
Sbjct: 380 LEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSELKLNEKQSEGILSMPLRKLTNLE 439

Query: 337 TRFPLN----MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI-DRRVEILK 391
           T+   N    + +L       +     +L E +   + +  +  S R   + +   E++ 
Sbjct: 440 TQGLYNEANDLKILEKNLREILENRSQLLSEMVNELKLLKKKFGSQRKTKLVEGGDELVA 499

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                     E+      E  PK          ++QV  IL  ++ +   L E  +  E 
Sbjct: 500 ERNANLRPNAELQRKKAFESLPKDG--YLLIQDDDQVK-ILRPQILTKLNLTESCLLGEG 556

Query: 452 ---DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
                LL    K   +L            +I  +K  F+ S      R     +      
Sbjct: 557 PVPTRLLWPIAKQPKILAITNH------GKIALLKWEFAGSQPGQLNRFLPSGLEGEKIT 610

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSA-----LHFKEGDSLKIALHAHTTDR 562
            L   +  +     ++S  G  +    + + D+S      L  K+G  LK AL       
Sbjct: 611 NLLPLLNTENLSLGLLSTDGRFKRTNLNEIIDISGRATTILKLKDGVFLKSALLCPLNGH 670

Query: 563 ILLLSTDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFV--YDSTCKLLV 616
           +L+++  G+   L        L+     G    ++I L   ++I+ A        C +++
Sbjct: 671 LLVVTNIGRIIKLKINEESIPLMGKLAQG---SVMIKLFPGENIIGALTTKEKENCNIIL 727

Query: 617 VSSKGNAFIVEESEIIANTRK--GKTFLKVSS--EEKMKLVVKVTGDHVAVV----GENR 668
           +S KG         I  +++   G+  +       +K +L+       +  +    G++ 
Sbjct: 728 ISEKGTVIKHSLKSIKESSKGDLGEIGISFKDKNNQKDRLIQTYNAKQLVGIKTNQGKHG 787

Query: 669 KL-------LIFSIDQ 677
           ++       L F+ +Q
Sbjct: 788 RVSSNQIEKLKFNEEQ 803


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/751 (30%), Positives = 386/751 (51%), Gaps = 42/751 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++ MS MGL    A  
Sbjct: 18  NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG++  D  AA RYTE
Sbjct: 78  KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG+SGIAVGMATSIP 
Sbjct: 137 ARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+  E Y  G+G F++R
Sbjct: 197 HNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAFKEIYATGKGSFKIR 255

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A+  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + D+ D S   +   +
Sbjct: 256 AKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKL 315

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +     +  P+ +M++++  + +E  F +N   L  G+ P+ + +  +LK ++ HR  V+
Sbjct: 316 VIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGK-PKTLGMLDMLKVFIDHRVCVI 374

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RRS F +    +R+ ++ GLL+A ++ID+ I+IIRN +   + +  ++   ++T +Q +
Sbjct: 375 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAE 434

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL++RL  L KL   +++SE + L    + ++ +L+   +    +  E+++V +     
Sbjct: 435 YILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQR---- 490

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG- 548
             L   R T  E S        +      P  VV++  G+I +++ ++  +S L   E  
Sbjct: 491 --LPSPRRTILESS-----VKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETF 543

Query: 549 D-----------SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           D            +K ++      RI  L++ GK        L          +  + L 
Sbjct: 544 DMAFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLE 603

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           ++++ V  F       L + +S G    V  +     T +    + +S+ +++    +  
Sbjct: 604 NDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTER---VITLSAGDRVVGAARGV 660

Query: 658 GD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF---KICEGLTW 711
               +   +     LL +S   +   +R  +GV   + KD     VI F   +  +    
Sbjct: 661 SSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDD-DRVISFGYTEDVDRANV 719

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +  + R      +        R   G    K
Sbjct: 720 LTVSKRMTTSRLSSYQTR--GRATRGVQCHK 748


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 224/693 (32%), Positives = 380/693 (54%), Gaps = 37/693 (5%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   + N+   S+   + E YL YA+   KERA+PD+RDG KPVHRRI++   ++     
Sbjct: 7   NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPD 66

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGD+AAA 
Sbjct: 67  KPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSIDGDNAAAM 126

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+T  A  +L+ +D+D VD    Y++ + EP V P++FPNLL NG  GIAVG+AT
Sbjct: 127 RYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGLAT 186

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN++E  +A +A IDN +IS ++L+ YI GPD PTGGII+   ++++ +Y  G G 
Sbjct: 187 NIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALLSAYEKGEGR 245

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDES 305
             +RA+  +E++    + I++ E PY+  KS++++ I+E+   K+    +  + DIRDES
Sbjct: 246 VTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRDES 305

Query: 306 AEDVRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             +    +    +S   ++   +++ +F  ++++     NM  ++ G+ P+ + L  ILK
Sbjct: 306 DRNGIRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGK-PETLGLKAILK 364

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVS 419
            ++ H++EV+ RRS   ++   +R  I++G + A   +D+I+  IR+    K     +V+
Sbjct: 365 YYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDSEQNLVN 424

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +F  +  Q  AI+ L L  L  LE    + E  NL  E + ++ +L+S K+ +  +  E+
Sbjct: 425 KFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKEIKALEKILSSEKELFKVVKKEL 484

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLK 534
            EVKE +         R T             + +I  E I + +SN G+I     +  +
Sbjct: 485 EEVKEKYGDP------RRTEIVHDDEQAKIDIEELILDEDIVITLSNEGYIKRVADKYYR 538

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQL 592
             +  +  + ++EGD     L+ +T D +++ + +G  Y +   N+     +  GE +  
Sbjct: 539 RINPKVEDIEYREGDFNTYLLNGNTKDNMMIFTDEGNLYQIRISNIPEMKWKEKGERLDT 598

Query: 593 LID-LN-HNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
           LI  L+   + I+  ++      +   +  +++G        +   N  K    LK+   
Sbjct: 599 LIKALDIEKEKIIDIYITSELLPSKSFMFFTNRGVIKKSSLDKFKTNYSK-LLALKLKDN 657

Query: 648 EKMKLVVKVTGDHVA----VVGENRKLLIFSID 676
           EK+  +  V  +H+     V+ +N   L F++D
Sbjct: 658 EKLIDIKLVNTEHIEKYISVITKNG--LSFTVD 688



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 21/207 (10%)

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID--LNHNQDIVTAFV---YDST 611
           A++  R+++    G  Y +PA  + +    G  +  LID      ++IV  +    +  +
Sbjct: 753 ANSLSRLIIFGEKGNVYYIPAYMIQNIDSKGIKLNDLIDDFKEKEENIVNIYSISEFSDS 812

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENR 668
             +   +  G        E  A     K +     ++K+  V+    D    + ++ +N 
Sbjct: 813 TSVYFFTKSGYVKRTNLQEFNAENPCIKGYKLKKEQDKIINVLLFNNDDKKDIILITKNA 872

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
             + F  + I  M +   GV   S +D   +         E    I+  G   ++   + 
Sbjct: 873 MGIRFEANSISYMGKIASGVTGISLRDNDEVIFAQFIDKKEEKDIINICGEFKSKLNVEC 932

Query: 727 LGWL-----------GKRGGVGSLVPK 742
              +             R G G  +  
Sbjct: 933 KDRIESEIILKNIKNQNRAGKGKKLIN 959


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/727 (28%), Positives = 384/727 (52%), Gaps = 25/727 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKKS
Sbjct: 15  KIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTE R
Sbjct: 75  ARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEVR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P HN
Sbjct: 135 LSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +AA+A + NP I + KL + I GPDFPTGGI +   E I E++  G+G   + +R
Sbjct: 195 LNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGI-IYGTEGIHEAFERGKGRITLASR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L  
Sbjct: 254 YNVYTDSKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILIT 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  D ++++  +F+ + M   +  N NV+     P+ + +  +L  +L H +++  + 
Sbjct: 313 LDKEADENVIVNYLFLKTQMRIYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDIKIKT 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQVDAI 431
             F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ  AI
Sbjct: 372 IEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATAI 431

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             LRL  L K +E+    E + L  + ++ + LLN   +    +    +++K  F     
Sbjct: 432 AELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKF----- 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
            GR R T  E  +   +  Q+ ++++E + + IS  G+I+ +     +   ++    KE 
Sbjct: 487 -GRARRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIKED 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D++    +A + D++LL +  G    LP   +   +    G  +   +DL   +++V+A 
Sbjct: 546 DNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAI 605

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +DS+  + + + KG    V   E  ++   K    +K+ S++++       G   V
Sbjct: 606 KVSDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDV 665

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSY 719
            ++ +N    ++S +++P    +  G +     +   +S        + +  I++  R+ 
Sbjct: 666 LLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAVVSSNDSVVLINANNRAK 725

Query: 720 NRSENDL 726
             + +++
Sbjct: 726 VVNVSEI 732


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/751 (30%), Positives = 386/751 (51%), Gaps = 42/751 (5%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            E +  V L   +++ +L YA S I  RA+PD RDG KPV RRI++ MS MGL    A  
Sbjct: 15  NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 74

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K AR+ GEV+GKLHPHGD ++YD+LVR++Q F  R PLI G GNFG++  D  AA RYTE
Sbjct: 75  KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRYTE 133

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++  ++ + VDF   Y+ + ++P V P+  PNL+ NG+SGIAVGMATSIP 
Sbjct: 134 ARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPP 193

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+QE   AA+ L+ N + S+E++++ + GPDFPTG IIV  +E+  E Y  G+G F++R
Sbjct: 194 HNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIV-GKEAFKEIYATGKGSFKIR 252

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312
           A+  ++  G G   +V+TE+PY V   R+IEKI + + A RI  + D+ D S   +   +
Sbjct: 253 AKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKL 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +     +  P+ +M++++  + +E  F +N   L  G+ P+ + +  +LK ++ HR  V+
Sbjct: 313 VIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGK-PKTLGMLDMLKVFIDHRVCVI 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
            RRS F +    +R+ ++ GLL+A ++ID+ I+IIRN +   + +  ++   ++T +Q +
Sbjct: 372 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAE 431

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            IL++RL  L KL   +++SE + L    + ++ +L+   +    +  E+++V +     
Sbjct: 432 YILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQR---- 487

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG- 548
             L   R T  E S        +      P  VV++  G+I +++ ++  +S L   E  
Sbjct: 488 --LPSPRRTILESS-----VKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETF 540

Query: 549 D-----------SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
           D            +K ++      RI  L++ GK        L          +  + L 
Sbjct: 541 DMTFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLE 600

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           ++++ V  F       L + +S G    V  +     T +    + +S+ +++    +  
Sbjct: 601 NDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTER---VITLSAGDRVVGAARGV 657

Query: 658 GD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF---KICEGLTW 711
               +   +     LL +S   +   +R  +GV   + KD     VI F   +  +    
Sbjct: 658 SSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDD-DRVISFGYTEDVDRANV 716

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           +  + R      +        R   G    K
Sbjct: 717 LTVSKRMTTSRLSSYQTR--GRATRGVQCHK 745


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/741 (27%), Positives = 379/741 (51%), Gaps = 25/741 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++M ++GL     FKKS
Sbjct: 15  KIIRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKS 74

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD S+YD++VR+ Q +   + L+   GN G+ID D AAA RYTE R
Sbjct: 75  ARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEVR 134

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  ++  + ++ V F   +++ + EPVV P   PNLL NG++GIA G AT +P HN
Sbjct: 135 LSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHN 194

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + EI +AA+A + NP I + KL + I GPDFPTGGI +   + I E++  G+G   + +R
Sbjct: 195 LNEILDAAIAKVKNPAIELSKLAKIIQGPDFPTGGI-IYGTDGIHEAFERGKGRITLASR 253

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + V    +  + I +TEIPY V KS+L+ +I  ++ ++ +  L +++D++  +   +L  
Sbjct: 254 YSVYADNKYKY-IEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILIT 312

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            ++  D ++++  +F+ + M   +  N NV+     P+ + +  +L  +L H +++  + 
Sbjct: 313 LDKEADENVIVNYLFLKTQMRVYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDIKIKT 371

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFSLTENQVDAI 431
             F +     R+EI+ G L      D++I +IR  +  K      ++S F  T NQ  AI
Sbjct: 372 IEFDLIKHRERLEIVIGFLKVAKISDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATAI 431

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             LRL  L K +E     E + L  + ++ + LLN   +    +    +++K  F     
Sbjct: 432 AELRLYKLSKTDEQSFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKVKF----- 486

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548
            GR R T  E  +   +  Q+ ++++E + + IS  G+I+ +     +   ++    KE 
Sbjct: 487 -GRPRRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIKED 545

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAF 606
           D++    +A + D++LL +  G    LP   +   +    G  +   +DL   +++V+A 
Sbjct: 546 DNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLASGEELVSAI 605

Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661
               +DS+  + + + KG    V   E  ++   K    +K+ +++++       G   V
Sbjct: 606 KVSDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISNGLKDV 665

Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            ++ +N    ++S +++P    +  G +     +          +    + +     +  
Sbjct: 666 LLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAV-VSSNDSVVLINANNKA 724

Query: 721 RSENDLLGWLGKRGGVGSLVP 741
           +  N        +   G  + 
Sbjct: 725 KVVNVSEITKVSKANKGVALF 745


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/763 (30%), Positives = 390/763 (51%), Gaps = 49/763 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +EE ++A+SL   ++  YL YA+S I  RA+PD RDG KPV RRI++AM E+GL     F
Sbjct: 1   MEERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  RYP++ G GNFG++D D  AA RYT
Sbjct: 61  KKCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYT 120

Query: 133 EARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           E R+  +A E +L  +  + V+F   ++    EP+V P++ P L+ NG SGIAVGMATSI
Sbjct: 121 ETRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+  A + +I  P IS E+LL  I GPDFPTGG ++     + E+Y  G+G   
Sbjct: 181 PPHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIGT-GVKETYLKGKGSIP 239

Query: 252 VRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R    +EE+  G        I++TE+PYQ+ KS  IEK+AE++   ++  + DIRDES 
Sbjct: 240 MRGIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESD 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R  +P+ ++ +++  + +++ F   +  +  G+ P+ + L   L  +L 
Sbjct: 300 REGMRIVVELRRDSNPEKILNTLYQRTSLQSNFGATLLAIVNGQ-PKQLSLKKFLDIFLE 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSL 423
            R   + RR+   +     R+EI++GLL A  N+  +I +I +     + +  ++ R  L
Sbjct: 359 FRELTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVRLDL 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           TE Q D IL++ LR L  LE   + +EL+ L  +K  ++ +LN   +    +  E++ ++
Sbjct: 419 TEKQADGILSMPLRRLTNLETQSLYNELEELKEKKSCLEIVLNDRDELLKAMIEELKGLR 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGWI 530
           + F        R+T   E      A    ++     +              ++I N   +
Sbjct: 479 KQFGSK-----RKTKLIEGGDELLAQRNASLRPNAELQRKKAYENLPRESRLMIQNDNQV 533

Query: 531 RSLKSHSVDLSALHFKE----GDSL---KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           + +    +    LH  E    GD+    ++        ++++++  GK   +      SG
Sbjct: 534 KIVSPQLLGR--LHLDESCNLGDAPIPARLIWPIEKNPKVIVVTNCGKIALVK-WEF-SG 589

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
              G   + +  +   + I +      D    + +++S G    ++  EI+  + +  + 
Sbjct: 590 NQPGIIQKFIPTILEKEKISSIIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGRAASL 649

Query: 642 LKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKG-VRLQSYKDGG 696
           LK+     ++  +     D++ +V +  ++L   ID   IP M +  +G V ++ +    
Sbjct: 650 LKLKENVNLQSGLICRLNDYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGER 709

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           I   I     E L  I   G     S N +     KRG +G++
Sbjct: 710 IIGAITCSSKEDLIMITKKGSILKHSINSI--RTCKRGDLGTI 750



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 170/460 (36%), Gaps = 42/460 (9%)

Query: 282 LIEKIAELIIAKR--IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETR 338
           ++E + + +   R  I ++E  +D      R+++         D ++   +  L+++ET+
Sbjct: 381 IVEGLLKALENVRNVIDMIESAKDAMEARTRLMVRLDLTEKQADGILSMPLRRLTNLETQ 440

Query: 339 FPLN--------MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
              N         + L +    +   L  +++E    R++   +R +   + I+   E+L
Sbjct: 441 SLYNELEELKEKKSCLEIVLNDRDELLKAMIEELKGLRKQFGSKRKT---KLIEGGDELL 497

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                +     E+      E+ P+   +      +NQV  +    L  L   E   +   
Sbjct: 498 AQRNASLRPNAELQRKKAYENLPRESRL--MIQNDNQVKIVSPQLLGRLHLDESCNLGD- 554

Query: 451 LDNLLAEKEKIDS-LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
                    ++   +  + K        +I  VK  FS +     ++     + +   ++
Sbjct: 555 ----APIPARLIWPIEKNPKVIVVTNCGKIALVKWEFSGNQPGIIQKFIPTILEKEKISS 610

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSA-----LHFKEGDSLKIALHAHTTDRI 563
           +     +KE    ++++ G  + L     VD+S      L  KE  +L+  L     D +
Sbjct: 611 IIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICRLNDYL 670

Query: 564 LLLSTDGKAYTLPAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
           +++S  G+   +   +    ++     G  I  L      + I+ A    S   L++++ 
Sbjct: 671 IIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFP---GERIIGAITCSSKEDLIMITK 727

Query: 620 KGNAFIVEESEIIANTRKG----KTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFS 674
           KG+      + I    R      K  LK S++E+ ++V    G  +  V+    +    S
Sbjct: 728 KGSILKHSINSIRTCKRGDLGTIKNILKDSNKEQNRVVQVFNGKSLVGVITSKERNGRIS 787

Query: 675 IDQIPEMSRGKGVR-LQSYKDGG-ISDVICFKICEGLTWI 712
            + I E+   K  + L    D   I +VI        ++I
Sbjct: 788 QEAIKEIKYDKINKDLIKVDDDEYIDEVIPLIDPNSHSFI 827


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 234/763 (30%), Positives = 374/763 (49%), Gaps = 54/763 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 8   LASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RY
Sbjct: 68  FRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRY 127

Query: 132 TEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +  + +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+
Sbjct: 128 TETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATN 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG  
Sbjct: 188 IPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDT-GIREAYRTGRGII 246

Query: 251 RVRARWCVEEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            VR     E +       R    IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDE
Sbjct: 247 PVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R   P  ++ +++  + ++T F   +  L   + P+ + L  +L+E+
Sbjct: 307 SNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQ-PRQLSLKQVLQEF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L  R   L R+    +Q    R+ +++GLL+A  NID ++ I++N       K    +  
Sbjct: 366 LRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAEL 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +++ Q D+IL + LR L  LE  ++++E   L  + +++++LL++ ++    +  E+R 
Sbjct: 426 GISDPQADSILAMPLRRLTGLERQKLETEATELQTKIQQLETLLHNRQEFLKSLKKELRS 485

Query: 482 VKEIFSKSTDLGRR------RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
           +K+ F+ S     R      R    E  + D    +Q   E+   T     +   +   S
Sbjct: 486 LKKKFADSRRTKIRTGKSGDRRQETEGKKLDSVVKKQETGERRQETGDGKQQAAGKKQDS 545

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                     K    +K             +    ++   P+ +L + +   E   LL+D
Sbjct: 546 VVKKQETADGKREAEVKKQ--------ENKVKKKSESENAPSLSLFTPQEPPENAILLLD 597

Query: 596 LN-------HNQD------IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                      +       I+     +     LV+     A+ +   E+     +     
Sbjct: 598 AEDKISWTTPEERVPDRDLIIYQQAIEKQENFLVILDNAKAYPISILEVPPQGNQPVLIS 657

Query: 643 KV------SSEEKMK----LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692
            +         E +     L        + ++ +  ++   SI+++  +   +G+ L   
Sbjct: 658 SLLTKTAQKESEAVLNQFFLTKPQKNQELLLLSQQGRIKRLSINELEGVG-SRGLSLMKL 716

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRS---ENDLLGWLGK 732
           K+        F   EGL    +             +LL  +GK
Sbjct: 717 KEDDRLYAAIFT-HEGLDLAIATSSGRVLRYPVREELLPIMGK 758


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 201/692 (29%), Positives = 362/692 (52%), Gaps = 23/692 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M   N  N    +   +   +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++
Sbjct: 1   MMNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL +   FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+
Sbjct: 61  MYELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D AAA RYTE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG 
Sbjct: 121 IDDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGA 180

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIA G AT +P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG+ V  ++ I 
Sbjct: 181 KGIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGV-VYGQQGIY 239

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E++  GRG   + +R+   E  +  + I + EIPY V KS+L+  I  +I  + +  L +
Sbjct: 240 EAFERGRGRITLVSRYRTFEDKKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLE 298

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I+D+S  +   +L   ++  + ++++  +   ++M+  +  N NV      PQ + L+ +
Sbjct: 299 IKDQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYN-NVAIKNNSPQTLGLNDL 357

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----V 416
           L  +L H R+V  +   F +     R+EI+ G L      DE+IA+IR  +  K      
Sbjct: 358 LNCYLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQN 417

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F  T NQ  AI  LRL  L K ++     E + L  + + ++ LLN  +     + 
Sbjct: 418 LMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLI 477

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             ++E+K+ F      GR R T         +  +  ++++E   + ++  G+++ + + 
Sbjct: 478 ETLQEIKKQF------GRPRRTTITEEAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNK 531

Query: 537 SVDLS---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
            V+ +       KEGD +     ++T + +LL +  G    +P   +     +  G  + 
Sbjct: 532 VVNSNDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLS 591

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE 647
             ++L   +++V A     ++    + + + +     V   E  ++   K  T +K+   
Sbjct: 592 DFVELVSGEELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKG 651

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           +++       G   V ++ +     +++ + +
Sbjct: 652 DELVGAKLSNGYKDVLLITKRGMASLYTENDV 683


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/695 (28%), Positives = 336/695 (48%), Gaps = 46/695 (6%)

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYN 159
           + Q F  RYPL++G GNFG++D D  AA RYTE R++ ++   +L  + E  VDF D ++
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EPVV P++ P LL NG SGIAVGMAT+IP HN+ EI +  +ALID P+++ EKL +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC------IVVTEI 273
            I GPDFPTGG I+++   I ++Y  GRG   VR    VEE+  G         ++VTE+
Sbjct: 121 LIPGPDFPTGGEIIDT-SGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTEL 179

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+  IEKIA+L+   R+  + D+RDES      V+    R   P  +++ ++  +
Sbjct: 180 PYQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQT 239

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            +++ F   M  L  G+ P+ + L   L+E+L  R + L R+ ++ +    +R  +++GL
Sbjct: 240 PLQSNFGAIMLALVNGQ-PRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGL 298

Query: 394 LIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           L+    +  +I I+ N       K     + +L+E+Q DAIL + +R L  LE  ++++E
Sbjct: 299 LVCLNQLTRVIEILTNAPDGTTAKTQFQEQLNLSESQADAILAMPMRRLTGLERQKLQTE 358

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            + L A  E +  LL+S  +    +  E+R +K  ++       R     +  +  K+  
Sbjct: 359 FEELTARIETLQELLSSRHELLKTLKKELRSLKRKYADPRRTKIRSAQSLKEPKQPKSEK 418

Query: 511 QQ----------------------AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           Q                          E E   +  + +G ++ L+S     S    K+G
Sbjct: 419 QTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEFTYQGHVQRLRSAPDPKSKPSIKDG 478

Query: 549 -DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ---LLIDLNHNQDIVT 604
            D +       T      L++ GKAY L   ++    G  + I    LL D   ++ ++ 
Sbjct: 479 NDFVIQTQQTTTASEFATLTSGGKAYPLKVQDIPPAAGRKQGIPVTRLLPDAAQSETVIA 538

Query: 605 AF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
            F       +  L++++ +G    +  +E++  T +G T +K+  E+ +  V    + D 
Sbjct: 539 HFRPHELTESVSLILLTQQGRVKRLPATELLNLTARGLTTVKLKEEDVLAYVTLAQSTDD 598

Query: 661 VAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
           + +   N +LL F I+   +P M R  +G +    +      V C  I      +  + +
Sbjct: 599 LIIATSNGRLLRFEINDQNLPIMGRTAQGNQALRLR-RREQLVGCVAIAPNENLLLVSEQ 657

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            Y +     +    KRG +G+   +    + + + 
Sbjct: 658 GYGKRIGLGVVRRIKRGDLGTQALQFKTSTDRLIG 692



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 83/199 (41%), Gaps = 21/199 (10%)

Query: 522 VVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA--Y 573
           ++++ +G ++ L +  +       L+ +  KE D L     A +TD +++ +++G+   +
Sbjct: 552 ILLTQQGRVKRLPATELLNLTARGLTTVKLKEEDVLAYVTLAQSTDDLIIATSNGRLLRF 611

Query: 574 TLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
            +   NL        G      + L   + +V          LL+VS +G    +    +
Sbjct: 612 EINDQNLPIMGRTAQGN---QALRLRRREQLVGCVAIAPNENLLLVSEQGYGKRIGLG-V 667

Query: 632 IANTRKGK---TFLKVS-SEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
           +   ++G      L+   S +++  V+  +  +   ++  + +++  S+  +  + + G 
Sbjct: 668 VRRIKRGDLGTQALQFKTSTDRLIGVINASQTETAVLLTSDERVMTVSLKSVKLLGKDGC 727

Query: 686 GVRLQSYK-DGGISDVICF 703
           G RL   K +  I DV   
Sbjct: 728 GDRLVKLKSNETIIDVTTI 746


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 221/784 (28%), Positives = 370/784 (47%), Gaps = 97/784 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+G  I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSG-GIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   +   
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L  W++HRR V
Sbjct: 315 IVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPH-TMGLRELLDVWISHRRTV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS FR +    R+ ++ GLL+A L+IDE+I +IR+    D  K  ++  F L E Q 
Sbjct: 374 VRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    + +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDTAVKQWDT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   + +                                             
Sbjct: 494 P-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAANAAR 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
                 A+     +  EP  V +S  G I            SH+ ++     K       
Sbjct: 549 KTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCK------T 602

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGR----GHGEAIQLLI------DLNH 598
                T     L+++ G+       +L       G+     HG   Q L+      D   
Sbjct: 603 MFETTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLSHGVKAQELLTSTQSTDPVR 662

Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
            + +V+A  +D++     L + +  G   +V+     A T     + + +  ++ +    
Sbjct: 663 GERVVSAIAFDASQNATPLAIGTRNG---VVKRWNFEAPTTMDSWSIIDLKDDDTVIAAA 719

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
                D +  +  +  LL F   Q+    R   G+      +G           + + W 
Sbjct: 720 PAEDNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWH 779

Query: 713 DSAG 716
              G
Sbjct: 780 YEEG 783



 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 31/166 (18%)

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEK 649
            +IDL  +  ++ A   +   +L+ +SS  +    +  ++     T  G   ++++   K
Sbjct: 705 SIIDLKDDDTVIAAAPAEDNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGAK 764

Query: 650 MK---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEM 681
           +                            +V  V GD  A+   EN    I   D  P  
Sbjct: 765 VATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPGTENGSAKITPFDMYPTK 824

Query: 682 SRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            R   GVR Q +  G  + +  +     L  +   G +    + D+
Sbjct: 825 GRATGGVRSQRFLKGQDTLIHAYVGYYPLQAVTEGGSNVELPKPDM 870


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 229/764 (29%), Positives = 385/764 (50%), Gaps = 47/764 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L  G+  Q + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQ-LTLRKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R   +  RS++ ++ I  R EI++ L+ A  N+ ++I +I N     + K  ++    
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F        RRT   E   A  A         + +              ++I +   
Sbjct: 479 KKRFGSK-----RRTKLIEGGDALIAEKMANQRPNKELQRINALKELSKDSEIIIQSNNE 533

Query: 530 IRSLKSHSVDLSALHFKEGDS-------LKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           I+ +   S+ +  L  KE D         K+        +IL +S +GK   L       
Sbjct: 534 IKIIP--SLTIKKLKLKESDQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLK-WEFAG 590

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
            +       L   L ++  I+            + ++S+ G    +  +EI   + +  T
Sbjct: 591 QKPGPLKQFLPAGLEND-KIINLIPLTEIRDISIGLISTDGKFKRISINEISDISNRSTT 649

Query: 641 FLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFS--IDQIPEMSR-GKGVRLQSY-KDG 695
            LK+    K+K  +    +    +V +  +++      +  P M +  +G  +     + 
Sbjct: 650 ILKLKDSIKLKSCILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNE 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            I + + F+  +    I    +      +     + K+G +G +
Sbjct: 710 NIVEALSFQEKKNKDLILITNKGSFVKHSTKEITISKKGALGIM 753


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/573 (27%), Positives = 271/573 (47%), Gaps = 29/573 (5%)

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRS 59

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    + 
Sbjct: 60  RTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 119

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ R
Sbjct: 120 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVVR 178

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431
           R+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q  AI
Sbjct: 179 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAI 238

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RLR L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS    
Sbjct: 239 LDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDK-- 296

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
              RRT    +     +   + +IE+  + + +SNRG+I+          K     +   
Sbjct: 297 ---RRTEL--MVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGT 351

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQD 601
             K+ D ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ ++ 
Sbjct: 352 GVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDES 411

Query: 602 IVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           I T    +        L   +  G        E     + G   L +  E+++  V+   
Sbjct: 412 IQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAE 471

Query: 658 GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
           GD   ++G      + F+   +  MSR   GV+  + ++G    V    I +    +   
Sbjct: 472 GDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVLIIT 530

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
            + Y +           RGG G    K   ++G
Sbjct: 531 EKGYGKRTVATEYPTKGRGGKGMQTAKITEKNG 563



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 406 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 465

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 466 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 524

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 525 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 584

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 585 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 634



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 379 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 435

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 436 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 495

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 496 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 555

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 556 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 615

Query: 651 K 651
            
Sbjct: 616 V 616


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 229/764 (29%), Positives = 386/764 (50%), Gaps = 47/764 (6%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E +K +SL   ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MAKERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++K AR+VG+V+GK HPHGDQ+VYD+LVR  Q F  RYP++ G GNFG+ID D  AA RY
Sbjct: 61  YRKCARVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++   IL  +D++ VDF   ++    EP V P++ P L+ NG++GIAVGMATS
Sbjct: 121 TETRLAPISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATS 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ EA +A+I  P ++ EKLLE I GPDFPTGG I+ S   I E+Y  GRG  
Sbjct: 181 IPPHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVS-NGIKETYTKGRGSI 239

Query: 251 RVRARWCVEEVGRGSWC-----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EE+  G        I+++E+PYQ+ K+  IEK+A+L+   +I  + DIRDES
Sbjct: 240 TMRGIARIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   +L    R  DP  +++ ++  + +++ F   +  L  G+  Q + L  +L  +L
Sbjct: 300 DRDGMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQ-LTLKKLLNNFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R   +  RS++ ++ I  R EI+  L+ A  N+ ++I +I       + K  ++    
Sbjct: 359 EFRENTILLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLIISLK 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + E Q D IL + L+ +  LE+  +K+EL +L  ++ +++ ++N  +     +  E++++
Sbjct: 419 INERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELELIINDKENLMKVMVKELKDL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVISNRGW 529
           K+ F        RRT   E   A  A         + +              ++I +   
Sbjct: 479 KKRFGSK-----RRTKLIEGGDALIAEKMANQRPNKELQRINALKELSKDSEIIIQSNNE 533

Query: 530 IRSLKSHSVDLSALHFKE-----GDSL--KIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           I+ +   S+ +  L  KE      D L  K+        +IL +S +GK   L       
Sbjct: 534 IKIIP--SLTIKKLKLKEINQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLK-WEFAG 590

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKT 640
            +       L   L ++  I+            + ++S+ G    +  +EI   + +  T
Sbjct: 591 QKPGPLKQFLPAGLEND-KIINLIPLTEIRDISIGLISTDGKFKRISINEISDISNRSTT 649

Query: 641 FLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFS--IDQIPEMSR-GKGVRLQSY-KDG 695
            LK+    K+K  +    +    +V +  +++      +  P M +  +G  +     + 
Sbjct: 650 ILKLKDSVKLKSCILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNE 709

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            I + + F+  +    I    + +    +     + K+G +G++
Sbjct: 710 NIVEALSFQEKKNKDLILITNKGFFVKHSTKEITISKKGALGTM 753


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 224/765 (29%), Positives = 376/765 (49%), Gaps = 58/765 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 80  ARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGPAAARYTEAR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L++  + E+ VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 139 MSREAMLLVGELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+ +++KL+E++ GPD PTG  ++   + +  +Y  GRG  R+RA+
Sbjct: 199 LGEVVSAARWLINHPDATLDKLMEFVPGPDLPTG-GLLLGLDEVRRAYETGRGVVRMRAK 257

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRDESAE-DVRI 311
             +   E  RG   I V E+PY +   ++I  +  E+   KR+  + D++D +   +   
Sbjct: 258 VEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV
Sbjct: 318 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLAHRYEV 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLL+A L+ID+++ +IR  +     K  ++ RF L+E Q 
Sbjct: 377 VTRRSAYRKRRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRRFGLSEIQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  ++++E + L  E  ++  LL+  K     ++ E+  V   F+ 
Sbjct: 437 TYILDTPLRRLTRYDRLELEAEQEKLRGEITELSRLLDDPKVLRKVVSTELAAVVRQFAA 496

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +               +P  V++S+ G +    + S +    H
Sbjct: 497 P-----RRTTLVDGDLKEVLAASVPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGH 551

Query: 545 FKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQ 591
            + G    D+++   H+    ++LL+++ G+A+ +    L          S RG G +  
Sbjct: 552 RRHGRVRHDAVRAVAHSTARGKVLLVTSGGRAFKVDVLPLPVLPDQSGTVSLRG-GMSAA 610

Query: 592 LLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFI------VEESEIIANTRKGKTF 641
            L+ L   + +V         + +  L + + +G   +      V   E           
Sbjct: 611 ELVPLAPGETVVGIAPLGAPAEGSPGLALGTRQGMVKVCAPDWPVRADEFE--------V 662

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
           + +   +++     +T   + +A V     LL + +  +     RG GV   S       
Sbjct: 663 ISLRDGDEVVGTTWLTDGAESLAFVTSEASLLRYPVGLVRPQGLRGGGVAGVSLPGDARV 722

Query: 699 ----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                V       G   + ++  +  +           R   G  
Sbjct: 723 VYFGAVRTDDPAHGEPMVVTSTGATVKVTPFAAYPAKGRATGGVR 767


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/692 (29%), Positives = 366/692 (52%), Gaps = 24/692 (3%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +  +  N L+ + +K  +L   + +R+  Y+   I++RA+PD+RDG KPV RRI+++
Sbjct: 1   MNKNQENKLNDLLSKIIKE-NLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+GL +   FKKSAR+VG+VIGK HPHGD S+Y+++VR+AQ +   + L+   GN G+
Sbjct: 60  MYELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D AAA RYTE R+  +A+L++  + ++ V F   +++ + EPVV PS  PNLL NG 
Sbjct: 120 IDDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIA G AT +P HN+ EI +A++A I NP+I + KL +Y+ GPDFPTGG+ V  ++ I 
Sbjct: 180 KGIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGV-VYGQQGIY 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E++  GRG   + +R+   E  +  + I + EIPY V KS+L+  I  +I  + +  L +
Sbjct: 239 EAFERGRGRITLVSRYRTFEDNKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLE 297

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           I+D+S  +   +L   ++  + ++++  +   ++M+  +  N NV      PQ + L+ +
Sbjct: 298 IKDQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYN-NVAIKNNSPQTLGLNDL 356

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----V 416
           L  +L H R+V  +   F +     R+EI+ G L      DE+IA+IR  +  K      
Sbjct: 357 LNCYLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQN 416

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +++ F  T NQ  AI  LRL  L K ++     E + L  + + ++ LLN  +     + 
Sbjct: 417 LMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLI 476

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             ++E+K+ F      GR R T         +  +  ++++E   + ++  G+++ + + 
Sbjct: 477 ETLQEIKKQF------GRPRRTTITEEAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNK 530

Query: 537 SVDLS---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQ 591
            V+ +       KEGD +     ++T + +LL +  G    +P   +     +  G  + 
Sbjct: 531 VVNSNDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKWKDFGVHLS 590

Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE 647
             ++L   +++V A     ++    + + + +     V   E  ++   K  T +K+   
Sbjct: 591 DFVELVSGEELVGAINVTDFNIQNYVCLFTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKG 650

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678
           +++       G   V ++ +     +++ + +
Sbjct: 651 DELVGAKLSNGYKDVLLITKRGMASLYTENDV 682


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/497 (41%), Positives = 300/497 (60%), Gaps = 12/497 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRAD 506
                 R T  E+   D
Sbjct: 483 ------RRTKIEMDAGD 493


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/497 (41%), Positives = 300/497 (60%), Gaps = 12/497 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVSRAD 506
                 R T  E+   D
Sbjct: 483 ------RRTKIEMDAGD 493


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 221/784 (28%), Positives = 370/784 (47%), Gaps = 97/784 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+G  I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSG-GIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   +   
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L  W++HRR V
Sbjct: 315 IVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPH-TMGLRELLDVWISHRRTV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS FR +    R+ ++ GLL+A L+IDE+I +IR+    D  K  ++  F L E Q 
Sbjct: 374 VRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    + +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDSAVKQWDT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   + +                                             
Sbjct: 494 P-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAANAAR 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
                 A+     +  EP  V +S  G I            SH+ ++     K       
Sbjct: 549 KTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCK------T 602

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGRG----HGEAIQLLI------DLNH 598
                T     L+++ G+       +L       G+     HG   Q L+      D   
Sbjct: 603 MFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVR 662

Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
            + +V+A  +D++     L + +  G   +V+     A T     + + +  ++ +    
Sbjct: 663 GERVVSAIAFDASQNATPLAIGTRNG---VVKRWNFEAPTTMDSWSIIDLKDDDTVIAAA 719

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
                D +  +  +  LL F   Q+    R   G+      +G           + + W 
Sbjct: 720 PAKDNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWH 779

Query: 713 DSAG 716
              G
Sbjct: 780 YEEG 783



 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 67/218 (30%), Gaps = 48/218 (22%)

Query: 525 SNRGWIRSLKSHSVDL----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +  G ++     +       S +  K+ D++  A  A   DR++ +S+D    T  A  +
Sbjct: 685 TRNGVVKRWNFEAPTTMDSWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQV 744

Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESE 630
              GR  G      I L     + T  V         Y+     L  S+ G         
Sbjct: 745 RPQGRTAGG--MAGIRLAEGAKVATFAVVPEKSIEWHYEEGENGLF-SASGTV------- 794

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVR 688
                                 V  V GD  A+   EN    I   D  P   R   GVR
Sbjct: 795 ----------------------VFTVAGDSEALPGTENGSAKITPFDMYPTKGRATGGVR 832

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            Q +  G  + +  +     L  +   G +    + D+
Sbjct: 833 SQRFLKGQDTLIHAYVGYYPLQAVTEGGSNVELPKPDM 870


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 221/784 (28%), Positives = 370/784 (47%), Gaps = 97/784 (12%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M  M L    A+
Sbjct: 17  VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAY 76

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R PL+ G GNFG++D D  AA RYT
Sbjct: 77  MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYT 135

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +   ++ED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 136 EARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMA 195

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+  AA  ++ +P+ +++ L++ + GPD+P+G  I+  R  I E+Y  GRG F  
Sbjct: 196 THNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSG-GIIIGRSGIREAYATGRGAFTT 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311
           R+   +E +      I+VTE+P+ V   R++E+I++ + ++++  +    D +   +   
Sbjct: 255 RSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTR 314

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L  W++HRR V
Sbjct: 315 IVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPH-TMGLRELLDVWISHRRTV 373

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + RRS FR +    R+ ++ GLL+A L+IDE+I +IR+    D  K  ++  F L E Q 
Sbjct: 374 VRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIKVFDLDEIQA 433

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+LRLR L K+   ++++E D+LL + E+++ +L+S  +  N +  ++    + +  
Sbjct: 434 QYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSEAKLDNVVIADMDSAVKQWDT 493

Query: 489 STDLGRRRTTFCEVSRA------------------------------------------- 505
                 RRT   + +                                             
Sbjct: 494 P-----RRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSANKITSTQADLAAAANAAR 548

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553
                 A+     +  EP  V +S  G I            SH+ ++     K       
Sbjct: 549 KTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSHNNNVFNTPCK------T 602

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-----SGRG----HGEAIQLLI------DLNH 598
                T     L+++ G+       +L       G+     HG   Q L+      D   
Sbjct: 603 MFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVR 662

Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654
            + +V+A  +D++     L + +  G   +V+     A T     + + +  ++ +    
Sbjct: 663 GERVVSAIAFDASQNATPLAIGTRNG---VVKRWNFEAPTTMDSWSIIDLKDDDTVIAAA 719

Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI 712
                D +  +  +  LL F   Q+    R   G+      +G           + + W 
Sbjct: 720 PAKDNDRLVFISSDSSLLTFDAKQVRPQGRTAGGMAGIRLAEGTKVATFAVVPEKSIEWH 779

Query: 713 DSAG 716
              G
Sbjct: 780 YEEG 783



 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 67/218 (30%), Gaps = 48/218 (22%)

Query: 525 SNRGWIRSLKSHSVDL----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           +  G ++     +       S +  K+ D++  A  A   DR++ +S+D    T  A  +
Sbjct: 685 TRNGVVKRWNFEAPTTMDSWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQV 744

Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESE 630
              GR  G      I L     + T  V         Y+     L  S+ G         
Sbjct: 745 RPQGRTAGG--MAGIRLAEGTKVATFAVVPEKSIEWHYEEGENGLF-SASGTV------- 794

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSRGK-GVR 688
                                 V  V GD  A+   EN    I   D  P   R   GVR
Sbjct: 795 ----------------------VFTVAGDSEALPGTENGSAKITPFDMYPTKGRATGGVR 832

Query: 689 LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            Q +  G  + +  +     L  +   G +    + D+
Sbjct: 833 SQRFLKGQDTLIHAYVGYYPLQAVTEGGSNVELPKPDM 870


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/494 (41%), Positives = 299/494 (60%), Gaps = 12/494 (2%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482

Query: 490 TDLGRRRTTFCEVS 503
                 R T  E+ 
Sbjct: 483 ------RRTKIEMD 490


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 204/480 (42%), Positives = 295/480 (61%), Gaps = 6/480 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AIL LRL  L  LE  +++ E   LL +      +L   +   + I  E++E+ ++    
Sbjct: 423 AILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTP 482


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 232/666 (34%), Positives = 366/666 (54%), Gaps = 31/666 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + N+  + +  A+ E YL YA    K+RA+PD+RDG KPVHRRI++   ++       + 
Sbjct: 11  DNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGAYKLAAFPDKPYY 70

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG+++GK HPHGD SVYD++V LAQ F  R PLI G GN+G+IDGDSAAA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T +A  +L+ +D+D V+  D Y+  + EP V PS++PNLL NG  GIAVG+AT+IP 
Sbjct: 131 ARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAFGIAVGLATNIPP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ +  LA IDN EI  ++L++YI GPD PTGGI++  + S++++Y  G G   +R
Sbjct: 191 HNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILI-GKNSLLKAYENGIGKVSLR 249

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309
           A+  +EE+ +G + IV+TE PY+  KS+L++ I+E+   KR    +  + DIRDES  + 
Sbjct: 250 AKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYISDIRDESDRNG 309

Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              +    RS D +++   ++ ++  +DM+     NM  L+ G+ P+VM L  ++  ++ 
Sbjct: 310 IRAVIEFKRSTDREIVEKTLKYLYKNTDMQINISFNMVALANGK-PEVMGLKTMIYHYVE 368

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSL 423
           H++EV+ RRS   ++  + R  I++G + A   +DEII  IR     K        +F+ 
Sbjct: 369 HQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEASKNLIDKFNF 428

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+ Q +AIL L L  L  LE    K E   L  + + +  +L   ++    I  E+ EV+
Sbjct: 429 TKVQSEAILELMLYRLTGLEVTSFKKEHKELEKKIKALKKILQHEEELLKVIKFELEEVR 488

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSV 538
           E +      G +R T             + +I  E   + IS  G+     ++S    + 
Sbjct: 489 EKY------GDKRKTLIIKDDEKAKIDIEDLIIDEETVITISKEGFCKRVSVKSYNRSNS 542

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593
           D+  + ++EGD  K  L   T D +L+ +  G  Y+    N+   R     I+L      
Sbjct: 543 DIEDIEYREGDYNKFLLEGSTKDNVLIFTNKGNMYSTKVINIPEKRWKDRGIRLDETIKT 602

Query: 594 IDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651
           IDLN  +  DI     + +    + ++S+G        +   N  K    LK+  +E++ 
Sbjct: 603 IDLNEEEIIDIYVVSKFTTQNDFIFITSRGGIKKTSLDKFETNYSK-LMALKLREDEEVI 661

Query: 652 LVVKVT 657
            V  + 
Sbjct: 662 DVKLMD 667



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID-LNHNQDIVTAFVYD---S 610
           L   +  ++L+   +G+   +    L +  G    I  L++      +I+    +D    
Sbjct: 750 LEVDSNKKLLIFLKNGEVIKINCNMLQNLEGKAINIFDLLEKYEQKNEIINVLPFDYNDE 809

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----SEEKMKLV---VKVTGDHVA 662
             ++  ++  G        E      +G  F+ +       E+++  V          + 
Sbjct: 810 DLEIYYLTKFGLVKKTLLKEF-----QGDYFITIGYKFRHKEDEIITVDFGKAHEEKDII 864

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSY 719
           ++ E    + FS + I  + +   GV   + K  D  +   I  +I + +      G+  
Sbjct: 865 IISEKGMCIRFSKNSINPVGKIASGVMGINLKKEDKVLYGFINTEIYKSIVLTFKEGKDE 924

Query: 720 NRSENDLLGWLGKRGGVGS 738
                D++     R G G+
Sbjct: 925 EIKLKDIIS--QNRAGKGN 941


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 236/759 (31%), Positives = 399/759 (52%), Gaps = 62/759 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-----------LLED 300
           +R++  +         +++ EIP+ ++K+ LI+KIA+L    +              L++
Sbjct: 256 LRSKVEI---DANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQRFLQN 312

Query: 301 IRDESA--EDVRIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           IRDES   E +R+++  K  S + D   ++ +++  + ++  F +N+ +L  G+ PQ++ 
Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQLLG 371

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+ +
Sbjct: 372 IGAIIRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  I 
Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K  F         R T        K   +   I KE I + ++   +I ++   
Sbjct: 492 KELIEIKNEFKN-----DLRKTLITPKGIAK-ITKWDCIPKEDIILKVTQNNYIAAIPLD 545

Query: 537 SVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----LS 582
            +DL         S+  FK GD     L + + D + + +   + + L A  +       
Sbjct: 546 KIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605

Query: 583 GRGHGEAIQLLIDL-NHNQDIVTAFVYDSTCK----------LLVVSSKGNAFIVEESEI 631
                + +  LI L   ++  V         +          LL  +  G    +   + 
Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKF 665

Query: 632 I--ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID--QIPEMSRGKG 686
                 + GKT +++S  +++K V+K+  D  + +     K++ F     +     +  G
Sbjct: 666 FLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFG 725

Query: 687 VRLQSYK------DGGISDVICFKICEGLTWIDSAGRSY 719
           VR  + +      +G +         + L  +  +G+  
Sbjct: 726 VRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGK 764



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/489 (14%), Positives = 156/489 (31%), Gaps = 89/489 (18%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            L   +R   L + R+    ++  V+       +P+++++  + L+ ++ +   ++ +  
Sbjct: 394 NLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQEKYSLTPVQIKDIFDLPLRQ 453

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN---IDEII 404
           + ++  +   + +       ++          +   +++ E +K  LI   N    D   
Sbjct: 454 LKKIEFLKLTNEL------DQKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRK 507

Query: 405 AIIRNEDKPK-----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS---------- 449
            +I  +   K      +      L   Q + I  + L  +       +            
Sbjct: 508 TLITPKGIAKITKWDCIPKEDIILKVTQNNYIAAIPLDKIDLTNRNTVGENSSSEFKTGD 567

Query: 450 -ELDNLLAEKEKIDSLLNSGKQQWNQIACEIR--EVKEIFSKSTDLGR--RRTTFCEVSR 504
            ++D LL+       +  +  + +   A EI+    K+   K   L          E + 
Sbjct: 568 LDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAV 627

Query: 505 ADKATLQQAMIEKEPI----TVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLK 552
              +  ++    +E       +  +  G+IR +        K      +A+   E D LK
Sbjct: 628 KIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLK 687

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-----DIVTAFV 607
             +  H    ILL S+  K     +  L + R         I+L ++      ++++A  
Sbjct: 688 FVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASS 747

Query: 608 YDSTCKLLVVSSKGNAFI----------VEESEIIANTR--------------------- 636
                +LL +   G   I          V+  E    T+                     
Sbjct: 748 TYDGDQLLSLVESGKGKITSLDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGELEYE 807

Query: 637 ---------KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG 684
                    KG    K    EK+   V +   D + ++     +  F   Q  + +  R 
Sbjct: 808 IKLSKKWGGKGVLAYKNKENEKLIACVLIKDSDQILLMTNTDHINRFQASQISVRKTRRT 867

Query: 685 KGVRLQSYK 693
           +G +L S K
Sbjct: 868 EGSQLISLK 876


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 198/736 (26%), Positives = 372/736 (50%), Gaps = 26/736 (3%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +   ++   + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L    AF+K
Sbjct: 14  ETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA RYTE+
Sbjct: 74  SAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTES 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G AT IP H
Sbjct: 134 RLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LI NP IS+E+L + + GPDFPTGG+ +   E I +++  G+G   + +
Sbjct: 194 NLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGV-IHGIEGIAQAFETGQGKINISS 252

Query: 255 RWCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+     E        I + E P+ V KS+L+  I  L+I K I  ++++RD+S  +   
Sbjct: 253 RYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGIS 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +        + + ++  +   +D+   +  NM  +     P++M L  +L  +L+H +++
Sbjct: 313 IYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENS-PKLMNLQMLLFTYLSHLKDI 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQ 427
             +   F ++  + R+EI++G +      DE+I +I+N D  K      +   F  T  Q
Sbjct: 372 NTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AI  LRL  L K+++ + ++E   L  +  +   LL +  +    I  +++++K+ ++
Sbjct: 432 ATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYA 491

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALH 544
           K       R +     +       + + + E     +S  G+I+ +   +      S   
Sbjct: 492 KP------RFSEISQDKIRTEINTKLLAKNEDFYFFLSKEGYIKRISKKAFSSNGFSGFK 545

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            K+ D++      ++  +++  +  G  + + A  L     +  G  I  L+ L +N+ I
Sbjct: 546 LKDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENGWKDIGNHISSLVALENNERI 605

Query: 603 VTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN-TRKGKTFLKVSSEEKMKLVVKVTG 658
           +       +++  + ++++ KG A  VE  E  +    + ++ + +   +++  V  V  
Sbjct: 606 IRVMEIESFNTYSRFIILTKKGMAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNK 665

Query: 659 DHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716
           + +  ++       +   + +PE S +  G+ L         +       +    I +  
Sbjct: 666 EKLLFILLTGGLYYLIDENVVPEYSLKASGISLIKTDRDQEIEAFSPISPKNKVIIMTDK 725

Query: 717 RSYNRSENDLLGWLGK 732
             + R++ + +  +G+
Sbjct: 726 GQFKRTKMETVKLVGR 741


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/540 (37%), Positives = 316/540 (58%), Gaps = 50/540 (9%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M    I + +    E +  VSL   + + YL YA+S I  RA+PD+RDG KPVHRR+++A
Sbjct: 1   MTDATIRHDHKFALETL-PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYA 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG+
Sbjct: 60  MHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 120 VDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAVGMAT+IP HN+ +   A L L+D P+  I++L++ I  PDFPTG   +     + 
Sbjct: 180 SGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGA-TIYGLSGVR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           E Y+ GRG   +R +  +E +GR      IV+ EIPYQV K++L+EKI +L+  K +  +
Sbjct: 239 EGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGI 298

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES +    V+    R+ + ++++  ++ L+ ++  F +NM VL  G+ P+++ L 
Sbjct: 299 SELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLK 357

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415
            IL E+L HRREV+ RR+ FR++       I +G  +A  NIDEII +I+   N  + K 
Sbjct: 358 QILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKD 417

Query: 416 VMVSR------------------------------------FSLTENQVDAILNLRLRSL 439
            +++R                                    + L+E Q DAIL + LR+L
Sbjct: 418 KLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNL 477

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             L++ +I     NL+ +      +L+  ++    I  E+ E  +++       RRR+  
Sbjct: 478 TGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEESNQLW------RRRRSEI 531


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 215/780 (27%), Positives = 375/780 (48%), Gaps = 76/780 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYT 119

Query: 133 EARMTQVAELILQGVDEDAVD-FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E +         D F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G G  +
Sbjct: 180 PTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D   ++ 
Sbjct: 240 VRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +    +    ++  ++  + +E  F +N+N ++ G+ P+VM L  ILK +  
Sbjct: 300 ECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGK-PEVMGLKKILKVYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK--------- 414
            +  +   +    +   +   EI  GLL A   ID II I+R        K         
Sbjct: 359 FKYGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTS 418

Query: 415 ---------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL +     +K   L+
Sbjct: 419 NVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELADAEKLIKKYTRLM 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+K  ++       RRT   ++       +++A +    + V++ 
Sbjct: 479 ESRDAMKQQMIDDMLEIKAKYAIP-----RRT---QIHNYGTVVVKKAEVVATDVAVLLD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----- 580
              +I+ + ++  + +     +    + A+     DRI + + + + YT+   ++     
Sbjct: 531 RFYYIKVVDANVYEKNIDQITKD--YRFAVKCQNLDRIAVFADNNQVYTIKVADIIKLQA 588

Query: 581 ---LSGRGHGEAIQLLI----------DLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFI 625
               S +G G  I  L           ++N +++I+      +  T KLL VS +G A +
Sbjct: 589 KKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSKQGLAKV 648

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V+ S      R           + +  + K+  GD +    E    +     +IPE  +G
Sbjct: 649 VDGSAFDTTRR---AANASKVGDDIIYIGKISEGDFIIAQSEKGYYIRVDAAEIPEKGKG 705

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL---GKRGGVGSLV 740
             GVRL + +   + + +         ++ S   ++   +N+++      GKRGG GS +
Sbjct: 706 AAGVRLINLEGDDVLESV---------FVGSTKDTFKVGDNEIIFTRVKPGKRGGKGSKL 756


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 236/759 (31%), Positives = 399/759 (52%), Gaps = 62/759 (8%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   NV+   +    +E +L Y+LS I  RA+PDL+DG KPVHRRI++A  E  L   + 
Sbjct: 17  LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           FKKSA +VG V+G  HPHGD+S+YD+LVRL+Q F  RYPL+ GQGNFG+IDGD  AA RY
Sbjct: 77  FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++++  E  L G+ E+ VDF D Y+    EP + P   P++L NG+ GIAVGMAT I
Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+C+A +ALIDNPE+  E+ +EYI GPDFPTGG I+   ES+   +  G G   
Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-----------LLED 300
           +R++  +         +++ EIP+ ++K+ LI+KIA+L    +              L++
Sbjct: 256 LRSKVEI---DANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQN 312

Query: 301 IRDESA--EDVRIVLFPKNRSLDPD--LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           IRDES   E +R+++  K  S + D   ++ +++  + ++  F +N+ +L  G+ PQ++ 
Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQLLG 371

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +  I++ +L H+ ++L R++ F ++ + RR+ +L+G      N+DE+I II +ED P+ +
Sbjct: 372 IGAIIRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +  ++SLT  Q+  I +L LR L+K+E  ++ +ELD   A++++  +LL+   +Q+  I 
Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ E+K  F         R T        K   +   I KE I + ++   +I ++   
Sbjct: 492 KELIEIKNEFKN-----DLRKTLITPKGIAK-ITKWDCIPKEDIILKVTQNNYIAAIPLD 545

Query: 537 SVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----LS 582
            +DL         S+  FK GD     L + + D + + +   + + L A  +       
Sbjct: 546 KIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605

Query: 583 GRGHGEAIQLLIDL-NHNQDIVTAFVYDSTCK----------LLVVSSKGNAFIVEESEI 631
                + +  LI L   ++  V         +          LL  +  G    +   + 
Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKF 665

Query: 632 I--ANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID--QIPEMSRGKG 686
                 + GKT +++S  +++K V+K+  D  + +     K++ F     +     +  G
Sbjct: 666 FLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFG 725

Query: 687 VRLQSYK------DGGISDVICFKICEGLTWIDSAGRSY 719
           VR  + +      +G +         + L  +  +G+  
Sbjct: 726 VRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGK 764



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 71/489 (14%), Positives = 156/489 (31%), Gaps = 89/489 (18%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
            L   +R   L + R+    ++  V+       +P+++++  + L+ ++ +   ++ +  
Sbjct: 394 NLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQEKYSLTPVQIKDIFDLPLRQ 453

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN---IDEII 404
           + ++  +   + +       ++          +   +++ E +K  LI   N    D   
Sbjct: 454 LKKIEFLKLTNEL------DQKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRK 507

Query: 405 AIIRNEDKPK-----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS---------- 449
            +I  +   K      +      L   Q + I  + L  +       +            
Sbjct: 508 TLITPKGIAKITKWDCIPKEDIILKVTQNNYIAAIPLDKIDLTHRNTVGENSSSEFKTGD 567

Query: 450 -ELDNLLAEKEKIDSLLNSGKQQWNQIACEIR--EVKEIFSKSTDLGR--RRTTFCEVSR 504
            ++D LL+       +  +  + +   A EI+    K+   K   L          E + 
Sbjct: 568 LDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAV 627

Query: 505 ADKATLQQAMIEKEPI----TVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLK 552
              +  ++    +E       +  +  G+IR +        K      +A+   E D LK
Sbjct: 628 KIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLK 687

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-----DIVTAFV 607
             +  H    ILL S+  K     +  L + R         I+L ++      ++++A  
Sbjct: 688 FVIKMHKDSEILLASSKNKVIRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASS 747

Query: 608 YDSTCKLLVVSSKGNAFI----------VEESEIIANTR--------------------- 636
                +LL +   G   I          V+  E    T+                     
Sbjct: 748 TYDGDQLLSLVESGKGKITSLDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGELEYE 807

Query: 637 ---------KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRG 684
                    KG    K    EK+   V +   D + ++     +  F   Q  + +  R 
Sbjct: 808 IKLSKKWGGKGVLAYKNKENEKLIACVLIKDSDQILLMTNKDHINRFQASQISVRKTRRT 867

Query: 685 KGVRLQSYK 693
           +G +L S K
Sbjct: 868 EGSQLISLK 876


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/777 (27%), Positives = 369/777 (47%), Gaps = 70/777 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI++++  +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG +DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYT 119

Query: 133 EARMTQVAELILQGVDEDAVD-FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E +         D F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +A +++PEI +E LL+ + GPDF TGGII  + E +   Y  G G  +
Sbjct: 180 PTHNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  V ++G G   I VTE+PY +    ++ ++ +AEL+  + +P + DI D   ++ 
Sbjct: 240 VRGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +    +    ++  ++  + +E  F +N+N ++ G+ P+VM L  ILK +  
Sbjct: 300 ECLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGK-PEVMGLKKILKVYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK--------- 414
            +  +   +    +   +   EI  GLL A   ID II I+R        K         
Sbjct: 359 FKYGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTS 418

Query: 415 ---------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL +     +K   L+
Sbjct: 419 NVKFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELSDAEKLIKKYTRLM 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+K  ++       RRT   ++       +++A +    + V++ 
Sbjct: 479 ESRDAMKQQMIDDMLEIKAKYAIP-----RRT---QIHNYGTVVVKKAEVVATDVAVLLD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----- 580
              +I+ + ++  + +          + A+     DRI + + + + YT+   ++     
Sbjct: 531 RFYYIKVVDANVYEKNIEQINRD--YRFAVKCQNLDRIAVFADNNQVYTIKVADIIKLQA 588

Query: 581 ---LSGRGHGEAIQLLI----------DLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFI 625
               S +G G  I  L           ++N +++I+      +  T KLL VS +G A +
Sbjct: 589 KKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSKQGLAKV 648

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V+ S      R         + + +  + K   GD +    E    +   I +IPE  +G
Sbjct: 649 VDGSAFDTTRR---AANASKAGDDIIYIGKFSEGDFIIAQSEKGYYIRVDISEIPEKGKG 705

Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             GV+L + +   + + +          +      + R +       GKRGG GS +
Sbjct: 706 AAGVKLINLEGDDVLESVFVGSTRDTFKVGDNEIIFTRVKP------GKRGGKGSKL 756


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/498 (40%), Positives = 301/498 (60%), Gaps = 17/498 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L    +   +L   +E  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL     
Sbjct: 8   LASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 67

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQSVY++LVR+ Q F  RYPL+SG GNFG+ID D  AA RY
Sbjct: 68  FRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRY 127

Query: 132 TEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +  + +L G+ E  V+F   ++    EPVV P++ P L+ NG SGIAVGMAT+
Sbjct: 128 TETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATN 187

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ E+ E  +ALIDNP++S EKL+E I GPDFPTGG I++    I E+YR GRG  
Sbjct: 188 IPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDT-GIREAYRTGRGII 246

Query: 251 RVRARWCVEEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            VR     E +       R    IVVTE+P+QV K+  IEKIAEL+   ++  + DIRDE
Sbjct: 247 PVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDE 306

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   V+    R   P  ++ +++  + ++T F   +  L   + P+ + L  +L+E+
Sbjct: 307 SNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQ-PRQLSLKQVLQEF 365

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L  R   L R+    +Q    R+ +++GLL+A  NID ++ I++N       K    +  
Sbjct: 366 LRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAEL 425

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +++ Q D+IL + LR L  LE  ++++E   L A+ +++++LL++ ++    +  E+R 
Sbjct: 426 GISDAQADSILAMPLRRLTGLERQKLETEATELQAKIQQLETLLHNRQEFLKSLKKELRS 485

Query: 482 VKEIFSKSTDLGRRRTTF 499
           +K+ F+       RRT  
Sbjct: 486 LKKKFAD-----SRRTKI 498



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 76/187 (40%), Gaps = 13/187 (6%)

Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL---NHNQDIVTAFVYDSTCK---LL 615
             L++  + KAY +    +         I  L+       ++ ++  F      K   LL
Sbjct: 658 NFLVILDNAKAYPIATREVPPKDNQPVLISSLLTKTAQKDSEAVLNQFFLTEPQKNQELL 717

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674
           ++S +G    +   E+     +G + +K+  ++++   +    G  +A+   + ++L + 
Sbjct: 718 LLSQQGRIKRLPIDELEGVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATSSGRVLRYP 777

Query: 675 IDQ--IPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           + +  +P MS+  +G+ +   + G  ++  +     E L  I  +G  Y +        L
Sbjct: 778 VREELLPMMSKSAQGLAILRLRYGEHLAGCVSLPHRENLLLI--SGLGYGKRLAIENLRL 835

Query: 731 GKRGGVG 737
            + G +G
Sbjct: 836 SQLGDLG 842



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 27/201 (13%)

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              +LLLS  G+   LP   L    G G     L+ L  +  +  A        L + +S
Sbjct: 713 NQELLLLSQQGRIKRLPIDELE---GVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATS 769

Query: 620 KGNAFIVEESE----IIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            G        E    +++ + +G   L++   E +   V +   +++ ++         +
Sbjct: 770 SGRVLRYPVREELLPMMSKSAQGLAILRLRYGEHLAGCVSLPHRENLLLISGLGYGKRLA 829

Query: 675 IDQIPEMSRGKGVRLQSYKDGG----------ISDVICFKICEGLTWIDSAGRSYNRSEN 724
           I+ +         RL    D G           S        EG   + S  ++      
Sbjct: 830 IENL---------RLSQLGDLGSPALQFVNKQDSLAAMVAAREGSIVLLSTNQNRKLPLE 880

Query: 725 DLLGWLGKRGGVGSLVPKGFP 745
                +  + G GS + K  P
Sbjct: 881 VETVTVTGKDGTGSQLVKLNP 901



 Score = 45.5 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 524 ISNRGWIRSLKS------HSVDLSALHFKEGDSLKIALHAHTTD--RILLLSTDGKAYTL 575
           +S +G I+ L         S  LS +  KE D L  A+   T +   + + ++ G+    
Sbjct: 719 LSQQGRIKRLPIDELEGVGSRGLSLMKLKEDDRLYGAIF--THEGLDLAIATSSGRVLRY 776

Query: 576 PAGN----LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           P       ++S    G AI   + L + + +           LL++S  G    +    +
Sbjct: 777 PVREELLPMMSKSAQGLAI---LRLRYGEHLAGCVSLPHRENLLLISGLGYGKRLAIENL 833

Query: 632 IANTRK--GKTFLK-VSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKG 686
             +     G   L+ V+ ++ +  +V      + ++  N  + L   ++ +    + G G
Sbjct: 834 RLSQLGDLGSPALQFVNKQDSLAAMVAAREGSIVLLSTNQNRKLPLEVETVTVTGKDGTG 893

Query: 687 VRLQSY 692
            +L   
Sbjct: 894 SQLVKL 899


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 153/566 (27%), Positives = 267/566 (47%), Gaps = 29/566 (5%)

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   +R+R  +E  
Sbjct: 1   AVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLRSRTEIETT 59

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +    +    R   
Sbjct: 60  KTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDAS 119

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV+ RR+ F  +
Sbjct: 120 ANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKE 178

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRS 438
             + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q  AIL++RLR 
Sbjct: 179 KAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRR 238

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  +I+SE D+LLA    +  +L   ++    I  E+ EVK  FS       RRT 
Sbjct: 239 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDK-----RRTE 293

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
              +     +   + +IE+  + + +SNRG+I+          K     +     K+ D 
Sbjct: 294 L--MVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDF 351

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           ++  +   T D +L  +  G+ Y L    +        G  +  L+ L+ ++ I T    
Sbjct: 352 VRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV 411

Query: 609 D----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664
           +        L   +  G        E     + G   L +  E+++  V+   GD   ++
Sbjct: 412 ESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIII 471

Query: 665 GEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           G      + F+   +  MSR   GV+  + ++G    V    I +    +    + Y + 
Sbjct: 472 GTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTV-VGASLITDQDEVLIITEKGYGKR 530

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSG 748
                     RGG G    K   ++G
Sbjct: 531 TVATEYPTKGRGGKGMQTAKITEKNG 556



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 13/230 (5%)

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             E          ++    +      +  G ++              L AL+ K+ D L 
Sbjct: 399 LDEDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELI 458

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
             L A     I++ +  G A       +         ++  ++L     +V A +     
Sbjct: 459 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKG-VNLREGDTVVGASLITDQD 517

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVGENR 668
           ++L+++ KG       +E     R GK        EK   +  ++ V GD  + ++ +  
Sbjct: 518 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 577

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYK-DGGISDVICFKICEGLTWIDSAG 716
            ++  ++  I +  R   GV++     D  I       + E         
Sbjct: 578 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 627



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 27/241 (11%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IREVKEIFSKSTDL 492
           R+  L+  E  +       L      +   L+  +     I  E    +   +F  +   
Sbjct: 372 RVYRLKGYEIPEYGRTAKGL-PVVNLLK--LDEDESIQTVINVESDRSDDAYLFFTTRHG 428

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVI------------SNRGW--------IRS 532
             +RT+  E +   +  L+   ++ E   + +            +  G+        +R 
Sbjct: 429 IVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRG 488

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ +Q 
Sbjct: 489 MSRIATGVKGVNLREGDTVVGASLITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQT 548

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + ++
Sbjct: 549 AKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQI 608

Query: 651 K 651
            
Sbjct: 609 V 609


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/762 (28%), Positives = 375/762 (49%), Gaps = 54/762 (7%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      
Sbjct: 1   MAEKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++ + AE +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EAKLARFAEEVYLKDLDKTVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+C+  +A I N +I  EKLLE + GPDFPTGGII   R+ +++ Y  G G  ++
Sbjct: 181 THNLSEVCDTCIAYIKNRDIDTEKLLEILHGPDFPTGGIIANKRD-LLDIYSTGNGKLKL 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +  VE          ++++EIPY       ++L+  +A L+  K++  + DI ++S +
Sbjct: 240 RGKIEVELGRRKSDKDKLIISEIPYTMIGTGINKLLVDVANLVETKKLSDVVDISNQSDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  F +NM  +     P+++ L  ILK ++  
Sbjct: 300 NGTRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIV-EGRPEILSLRDILKNYIEF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI--------------------- 406
           + ++  ++ +  +     + EI +GL+ A   ID IIAI                     
Sbjct: 359 QYKITTKKYNILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLTSGDTTG 418

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           I  + K       + S T+ Q  A+L++RL  L  LE   +  + +  L    +  ++L 
Sbjct: 419 ITFKVKSLEKDAKKLSFTDKQAQAVLDMRLYKLIGLEIEALLKDNEITLKNIAEYKNILK 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + K        ++ ++K+ F+        R T+ E ++  +A  ++ ++  E +  V+  
Sbjct: 479 NHKNMDKLFIKDLEKIKKEFAVP------RKTYIEDAK--EAVYEEEVLPSEEVIFVMDR 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
            G+ + L  ++ D +A + +  +  K       TDRI + S  G  Y L   +L     +
Sbjct: 531 FGYCKILDRNTFDKNAENIETEN--KYVFPVMNTDRICIFSNKGILYKLKVTDLQISKLK 588

Query: 585 GHGEAIQLLIDLN-HNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  +  L   +  N++I+ A   D+     +L+++ KG    V   E   N ++    
Sbjct: 589 DKGTPVDNLTKFDSSNENILLAVSEDNIQGSYILMITKKGYVKKVSFEEFKTNNKQ-VVS 647

Query: 642 LKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
            K+++++ +  V  ++      + VV +   +L F I ++ E  +  +G +  +   G  
Sbjct: 648 TKLTNDDVLVGVNLLSAGINTDIFVVSDANYILRFDISEVNEFKKNTRGEKAMTL--GYN 705

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
             V    +       +  G+  N     L      +G  G  
Sbjct: 706 EFVENMYLLSDTGIAEVNGKEVNL----LKVRQSHKGYKGQK 743


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/749 (28%), Positives = 380/749 (50%), Gaps = 30/749 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +   SL   + E +  YA   I++RA+PD+RDG KPV RRI+HAM+E+ +     +K
Sbjct: 5   NDKIWNRSLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKPYK 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR VGEVIGK HPHGD S+Y+++VR++Q +    PL+  QGN G+IDGDS AA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+++  + IL+ +D++ V F + +++ + EP V PS  PN+L NG +GIA G AT+IP 
Sbjct: 125 CRLSKFGQTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N  E+ +  +  I  PE S+ +L + I GPDFPTGGI ++ +E I E Y+ G+G F +R
Sbjct: 185 FNPSEVIDGTIYRILRPESSLAELAKIIKGPDFPTGGI-IQGKEFIQEIYKTGKGKFFIR 243

Query: 254 ARWCVEEVG--RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A+   E     +    ++V EIPY   KS +++ + E+     +P  +++RD+S ++   
Sbjct: 244 AKIEEEPTKSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGIS 303

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++   +   D +++   ++  + ++  +  NM VL   R P    L  IL  ++ H   V
Sbjct: 304 IVLEFDTEKDLEIIKTFLYKKTQLQISYNANM-VLIKDRKPVQAGLLEILDSFIEHANNV 362

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428
           + + + + ++    R EI++GL+ A   ID ++ +I++    ++ K  +   F + E Q 
Sbjct: 363 VIKAAQYDLEKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAKLKIQDYFKVNERQS 422

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           +AI+NLRL  L   +  ++K E + LL   ++ + ++NS   +   I   +   K+ F  
Sbjct: 423 EAIVNLRLYVLTSFDTEKLKKEYEELLEFIKEKELIINSVPYRNKFIVSILENHKKSF-- 480

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK---SHSVDLSALHF 545
               G +R +  E    +       ++E+   T +++   +I+ +       +DLS    
Sbjct: 481 ----GYKRRSLIENEVEELEIETVDIVEERNGTCIVTRDNYIKFIDDVSIEELDLSKAKI 536

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603
           K+ D         T D ++ L+  GK  T+PA  +     + +G  I  LI ++  +  +
Sbjct: 537 KDADIPVDIFRLSTLDHLVCLTNRGKMITIPAYKIKMTKLKDNGVHINELITIDSFEKTI 596

Query: 604 TAFVY----DSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKL---VVK 655
            AF      D   ++LV +       +   +I ++   K  T++ +       +   ++K
Sbjct: 597 LAFGVSKYSDINTEILVATKNSLIKRISLEDINLSKNAKSSTYVSLKGGNDDVVSAYILK 656

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC-FKICEGLTWID 713
                V  V +N     + ID+IP + R   GV+  S KD  +          E   +  
Sbjct: 657 KEYSEVVSVTQNGYATRYKIDEIPLVGRTAAGVKNMSLKDKDLMAFTVPIPKHENFLFFI 716

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           S   +     ND+   +  R  +G  + +
Sbjct: 717 SNRGAKRIHINDI--VVTSRSKLGKRIFQ 743


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 149/590 (25%), Positives = 275/590 (46%), Gaps = 44/590 (7%)

Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+   A   ++NPE S E+LL    E I GPDFPTG ++V  R+ I E+YR GRG  
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSI 77

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDV 309
            +RA   VEE+ +   C+VVTE+PYQV    L +KIA+L+   +I  + D+RDE S+   
Sbjct: 78  TMRAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTG 136

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           + ++    R     +++ +++  +D++T F  NM  L  G VP+ + LD  ++ W+ H+ 
Sbjct: 137 QRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQI 195

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426
           EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + E 
Sbjct: 196 EVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLMGLLEIDEI 255

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL ++LR L  LE  +I  E D L A+  + + +L S  +Q   ++ E+  + E +
Sbjct: 256 QANAILEMQLRRLAALERQKIVQEHDELQAKINEYNEILASPVRQRGIVSAELAAIVEKY 315

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   R+T        +     + +I +E I V ++  G+I+          K    
Sbjct: 316 GD-----DRKTKLI---PYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGK 367

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL 596
            +     KE D +     + T   +L  +  G+ Y   A  L        G+ +  L+  
Sbjct: 368 GVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAF 427

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EE 648
             ++ I        Y++   L++ +  G        +  +    G   + +       ++
Sbjct: 428 QPDESIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREREDGTDD 487

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFK 704
           ++     V+  D + ++ +  + + F+     +  M R   GV+  S+++G   +++   
Sbjct: 488 ELIGAELVSADDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREG--DELLSMN 545

Query: 705 ICEGLTWI-DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           +    T++  +    Y +        +  RGG+G    K     G+ + +
Sbjct: 546 VVRPGTFVFTATDGGYAKRTRVDEYRVQGRGGLGIKAAKIVEDRGELVGA 595



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSVD------LSALHFKE-----GDSLKIALHAHTTDRI 563
            E  P  V+ +  G ++       D      + A++ +E      D L  A      D +
Sbjct: 442 YEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDL 501

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKG 621
           LL+S   ++    A +  + R  G A   +  +      ++++  V      +   +  G
Sbjct: 502 LLISKKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGG 560

Query: 622 NAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            A      E     R G   K    V    ++   + V   D +  +  +  ++   +++
Sbjct: 561 YAKRTRVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDEILAITLSGGVIRTRVNE 620

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + E  R   GV+L +   G    V+   
Sbjct: 621 VRETGRDTMGVQLINL--GKRDAVVGIA 646



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 520 LRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTRVDEYRVQGRGGLG 579

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +    ++V A V + T ++L ++  G       +E+    R   G   + +   
Sbjct: 580 IKAAKIVEDRGELVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKR 639

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 640 DAVVGIAR 647


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 225/766 (29%), Positives = 380/766 (49%), Gaps = 60/766 (7%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI+ +M E G        KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+GK HPH D ++YD+LVRLAQ F    PLI G GNFG+ D D  AA RYTEAR
Sbjct: 80  ARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGPAAARYTEAR 138

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M++ A L++  + ED VD    Y+   ++P V P+ FPNLL NG SGIAVGMAT++  HN
Sbjct: 139 MSREAMLLVGELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHN 198

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+  AA  LI++P+ +++KL+E++ GPD PTG  ++   + +  +Y  GRG  R+RA+
Sbjct: 199 LGEVVTAARWLINHPDATLDKLMEFVPGPDLPTG-GLLLGLDEVRRAYETGRGVVRMRAK 257

Query: 256 WCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRDESAE-DVRI 311
             +   E  RG   I V E+PY +   ++I  +  E+   KR+  + D++D +   +   
Sbjct: 258 VEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTR 317

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LAHR EV
Sbjct: 318 LVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLAHRYEV 376

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428
           + RRS++R +  + R+ ++ GLL+A L+ID+++ +IR  +     K  ++ RF L+E Q 
Sbjct: 377 VTRRSAYRRRRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRRFGLSEVQA 436

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             IL+  LR L + +  ++++E + L +E  ++  LL+  K     ++ E+  V +  + 
Sbjct: 437 TYILDTPLRRLTRYDRLELEAEQEKLRSEIAELSRLLDDRKVLRKVVSNELAAVVKQSAA 496

Query: 489 STDLGRRRTTFCEVSRAD----KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
                 RRTT  +    +            +  +P  V++S+ G +    + S + +   
Sbjct: 497 P-----RRTTLVDGDLKEVLAASVPSGPLEVADDPCQVILSSTGLVARTAAESEEAAEGS 551

Query: 545 FKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGHGEAIQ 591
            + G    D+++   H+    R+LL+++ G+A+ +    L          S RG G ++ 
Sbjct: 552 RRHGRVRHDAVRAVAHSTARGRVLLVTSGGRAFKVDVLPLPVLPEQSGTVSLRG-GMSVA 610

Query: 592 LLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTRKGKTF 641
            L+ L   + +V       + +    L + + +G   +      V   E           
Sbjct: 611 ELVPLAPGETVVGIAPLGPSAEGSPGLALGTRRGMVKVCAPEWPVRADEFE--------V 662

Query: 642 LKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSY-KDGGI 697
           + +   +++     +T   + +  V     LL +S   +     RG GV       D  +
Sbjct: 663 ISLRDGDEVVGATWLTDGAESLTFVTSEASLLRYSTGLVRPQGLRGGGVAGVGLSGDARV 722

Query: 698 SDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
                 +  +        + S G +   +        G R   G  
Sbjct: 723 VFFGAVRTDDPTHGEPMVVTSTGATVKVTPFAAYPAKG-RATGGVR 767


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/756 (26%), Positives = 363/756 (48%), Gaps = 50/756 (6%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ YL Y++S I  RAIPD RDG KPV RR+++ MSE+ +      
Sbjct: 1   MAEKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV L+Q F +   LI G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++ +  E +     +  VDF   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EAKLAKFTEEVYLKDLDKTVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +HN+ E+C   +A I N  I  + LLE + GPDFPTGGI + +++ + + Y  G G  ++
Sbjct: 181 THNLLEVCNTCIAYIKNRNIDTKGLLEILHGPDFPTGGI-IANKKDLFDIYDTGNGKLKI 239

Query: 253 RARWCVE--EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           R +  VE          ++++EIPY       ++ +  +A L+ +K++  + DI ++S +
Sbjct: 240 RGKIEVELGRKKSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSDK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           +   ++    +  D + +   ++  + +E  F +NM  +  G  P+++ L  ILK +L  
Sbjct: 300 NGTRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVDG-RPEILSLRDILKNYLDF 358

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLN---------------------IDEIIAI 406
           + E+  ++ +  +     + EI +GL+ A                        I      
Sbjct: 359 QYEITTKKYNILLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTTG 418

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           I  + K       + S TE Q  AIL++RL  L  LE   +  +    L   E  +++L 
Sbjct: 419 INFKVKTFEKDAKKLSFTEKQAQAILDMRLYKLIGLEIEALLKDNAATLKNIEDYENILK 478

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             K        ++ ++K  F+       +R T  E ++  +A   +  +  E +  V+  
Sbjct: 479 DHKNMDKLFIKDLEKIKRDFA------LQRKTLIEDAK--EAIYIEEPLASEEVIFVMDK 530

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR 584
            G+ +     + D +A   +  +          TD++ + S  G  Y +   +L     R
Sbjct: 531 FGYCKVYDRGTFDKNAQAVESEN--IYVFPVMNTDKVCIFSNTGILYKIKVIDLPLSKLR 588

Query: 585 GHGEAIQLLIDLNHN-QDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             G  I  L   + + ++I+ A   DS     +L+++ KG    V   E   N ++    
Sbjct: 589 DKGTPIDNLTKFDSSTEEILLAVSEDSMRGNSILMLTKKGFIKKVSCEEFKTNNKQ-VAS 647

Query: 642 LKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGG 696
            K+++++ +  V  ++      + ++ +   +L F+I ++ E  +  +G +  +   +  
Sbjct: 648 TKLTNDDVLIAVKMISSGINTDIFIISDAGYILRFNISEVNEFKKSTRGEKAMTLGYNEY 707

Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732
           I ++       G   I     + N+ +    G+ G+
Sbjct: 708 IKELYLLNDT-GFVNISGKEIALNKVKPSHRGYKGQ 742


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/500 (41%), Positives = 294/500 (58%), Gaps = 45/500 (9%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +ISIE L+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQV 277
           E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV
Sbjct: 181 EHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++ 
Sbjct: 240 NKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 299

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A 
Sbjct: 300 SFGINMVAL-HHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVAL 358

Query: 398 LNIDEIIAIIRNEDKPKPV-------------------------------------MVSR 420
            NID II +IR+   P                                            
Sbjct: 359 ANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGL 418

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 419 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 478

Query: 481 EVKEIFSKSTDLGRRRTTFC 500
            V+E F        RRT   
Sbjct: 479 LVREQFGDK-----RRTEIT 493


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 189/443 (42%), Positives = 296/443 (66%), Gaps = 5/443 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARM+++A  +L+ ++++ VDF D Y+  + EP+V P++FPNLL NG +GIAVGMAT+I
Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E  +A   ++DNPE++ + L+E + GPDFPTG +++  +  I ++Y  G+G   
Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R+R  +E    G   IVVTE PY V K+++ E I  L+  KRI  +  +RDES  +   
Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVR 299

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +    R    ++++ ++F ++ M+T F  NM  +  G +P+++ L  IL  ++ H++EV
Sbjct: 300 FVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEV 358

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428
           + RR+ F  +  + R  IL+GLLIA  +IDE+I IIR  +   + +  ++S+F L+E Q 
Sbjct: 359 VVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQS 418

Query: 429 DAILNLRLRSLRKLEEYQIKSEL 451
            AIL++RLR L  LE  +I+SE 
Sbjct: 419 QAILDMRLRRLTGLERDKIQSEY 441


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 319/472 (67%), Gaps = 8/472 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L  +  + + L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  
Sbjct: 2   SDLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA
Sbjct: 62  AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HNV+EI +A +ALID P  S+++LLE++ GPDFPT   I+  R+ I + Y+ GRG
Sbjct: 182 TDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+        V+T +P+QV  ++++E+IA  + AK++P++ED+RDES  +
Sbjct: 242 SVRMRALWKKED-----GSAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+ P+   +D D +M  +F  +D+E  + +NMN++ +   P V  L  IL EWL 
Sbjct: 297 NPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLV 356

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            RR+ +  R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++  FS++E 
Sbjct: 357 FRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFSISET 416

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           Q +AIL L+LR L KLEE +I+ E D L  E++++ +LL S ++    I  E
Sbjct: 417 QAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKE 468


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/746 (27%), Positives = 375/746 (50%), Gaps = 31/746 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +I NP I+IE++   I+GPDFPTGGI V  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGI-VYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNS-PKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K  +VS     F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     +   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T    S       +  +++ E     I+  G  + L   +    ++       
Sbjct: 482 -----RKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPN 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
           GD        +   + + L+  G+   L    +     +     +++ + + +NQ I++ 
Sbjct: 537 GDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSV 596

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMKLVVKVTG-DH 660
           F    ++S+  L+ +S    A  +   +++   +K    + +    +++  V       +
Sbjct: 597 FFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKN 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + ++    + L  SI +IP  +R   G+++ +  K+  IS     +  E L  ID   + 
Sbjct: 657 IVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQF 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
              +  +L        G   L PK F
Sbjct: 717 EKINTENLFF------GNKILTPKNF 736


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/746 (27%), Positives = 375/746 (50%), Gaps = 31/746 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD+RDG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + +I NP I+IE++   I+GPDFPTGGI V  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGI-VYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNS-PKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K  +VS     F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     +   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T    S       +  +++ E     I+  G  + L   +    ++       
Sbjct: 482 -----RKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPN 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
           GD        +   + + L+  G+   L    +     +     +++ + + +NQ I++ 
Sbjct: 537 GDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSV 596

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMKLVVKVTG-DH 660
           F    ++S+  L+ +S    A  +   +++   +K    + +    +++  V       +
Sbjct: 597 FFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKN 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + ++    + L  SI +IP  +R   G+++ +  K+  IS     +  E L  ID   + 
Sbjct: 657 IVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQF 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
              +  +L        G   L PK F
Sbjct: 717 EKINTENLFF------GNKILTPKNF 736


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 200/560 (35%), Positives = 303/560 (54%), Gaps = 15/560 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +   +    E V  + +   +   +L Y+ S I  RA+PD RDG KPV RRI+  M +MG
Sbjct: 1   MPKISEPSAEKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L       KS+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R P+I G GNFG++D D 
Sbjct: 61  LRPDRGHVKSSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM   A  ++  +DED VD    Y+    +P V P+  PNLL NG+SGIAV
Sbjct: 120 PAAPRYTEVRMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAV 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT++P HN+ E+  AA  L+ NP+  +E+++ ++ GPD P GG IV   E I E+Y  
Sbjct: 180 GMATNMPPHNLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIV-GLEGIREAYAS 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F+ RA   +E V      IV TE+PY V   ++IEK+ + I AK++  +  I++ +
Sbjct: 239 GRGIFKTRATAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLT 298

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
                  ++       +P+ ++  ++  + +E  F +N   L  G  PQ + L  +L+ +
Sbjct: 299 DRHHGMRLVVEVKNGFNPEAVLLQLYRHTPLEDSFGINNVALV-GGQPQTLGLIELLRVF 357

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L HR +V  RRS FR+    R + ++ GLL A +NIDE+IA+IR+ D     +  ++  F
Sbjct: 358 LDHRLDVTRRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQVF 417

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            LTE Q + IL LRLR L K    +++     LL     ++ +LNS ++  + ++ E+ E
Sbjct: 418 DLTEPQAEYILELRLRRLTKYSVIELEQRRSELLEAIADLEDVLNSPERLRDLVSAELDE 477

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI---EKEPITVVISNRGWIRSLKSHSV 538
           V            RRT   E   A +A    A+      +P  V++S  G        S 
Sbjct: 478 VARAHGTP-----RRTVLLESDGATEAGSSAALPLEVADDPCFVLLSGTGLAARTADSSP 532

Query: 539 DLSALHFKEGDSLKIALHAH 558
                     D++   + A 
Sbjct: 533 PAREGERGPHDAILACVPAT 552


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 138/566 (24%), Positives = 261/566 (46%), Gaps = 40/566 (7%)

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           + L+E I GPDFPTG ++V  R+ I E+YR GRG   +RA   VEE+ +   C+VVTE+P
Sbjct: 146 DALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITMRAVVEVEEI-QNRQCLVVTELP 203

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           YQ     L +KIA+L+   ++  + D+RDE S+   + ++    R     +++ +++  +
Sbjct: 204 YQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHT 263

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
           D+++ F  NM  L  G VP+ + LD  ++ W+ H+ EV+ RR+ FR++  + R  IL+GL
Sbjct: 264 DLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGL 322

Query: 394 LIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           L A   IDE+IA+IR  D     +  ++    + E Q +AIL ++LR L  LE  +I  E
Sbjct: 323 LKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQANAILEMQLRRLAALERQKIVRE 382

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            D L A+  + + +L S  +Q   ++ E+  + E +        R+T        +    
Sbjct: 383 HDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGD-----DRKTKLI---PYEGDMS 434

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I +E I V ++  G+I+          K     +     KE D +     + T   
Sbjct: 435 IEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHW 494

Query: 563 ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVV 617
           +L  +  G+ Y   A  L        G+ +  L+    ++ I        Y++   L++ 
Sbjct: 495 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAVPYLVLA 554

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEKMKLVVKVT-GDHVAVVGENRKLL 671
           +  G        +  +    G   + +       ++++     V+  D + ++ +  + +
Sbjct: 555 TKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSI 614

Query: 672 IFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWI-DSAGRSYNRSENDLL 727
            F+     +  M R   GV+  S+++G   +++   +    T++  +    Y +  +   
Sbjct: 615 RFTASDDTLRPMGRATSGVKGMSFREG--DELLSMNVVRAGTFVFTATDGGYAKRTSVDE 672

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLSS 753
             +  RGG+G    K     G  + +
Sbjct: 673 YRVQGRGGLGIKAAKIVEDRGSLVGA 698



 Score = 44.4 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  + F+EGD L           +   +  G A              G  
Sbjct: 623 LRPMGRATSGVKGMSFREGDELLSMNVVRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLG 682

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           I+    +     +V A V +   ++L ++  G       + +    R   G   + +   
Sbjct: 683 IKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKR 742

Query: 648 EKMKLVVK 655
           + +  + +
Sbjct: 743 DAVVGIAR 750


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 219/783 (27%), Positives = 354/783 (45%), Gaps = 89/783 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L     
Sbjct: 15  QVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTPDRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA RY
Sbjct: 75  YMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAASRY 133

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++
Sbjct: 134 TEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNM 193

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P G  I+  R  I  +Y  GRG   
Sbjct: 194 ATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGG-GIIIGRNGIRGAYETGRGTLT 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +  
Sbjct: 253 TRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGT 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR 
Sbjct: 313 RLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPH-TMGLKEMLQVWIDHRRI 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR  D     K  +++ F L + Q
Sbjct: 372 VVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLDDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L ++   ++++E D+L    E+++ +L S ++    +  E+ +    + 
Sbjct: 432 AQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQELDRVVVDEMDQAVAEYG 491

Query: 488 KSTDLGRRRTTFCEVSRA------------------------------------------ 505
                  RRT   + +                                            
Sbjct: 492 TP-----RRTVLLDEAEDGTLTPVTPHGDDSVNAAAMKAAAAATTLSSAEADVTAAAAAR 546

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKIAL 555
               D A +    I+ EP TV++S  G I      ++D       S    K+ D +    
Sbjct: 547 KAGEDAAAVAALQIDDEPCTVMLSASGTIARSTPAALDAWESRSTSDERTKD-DHIVSIF 605

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDI 602
              T     L+++ G+        L +     +              +    D    + +
Sbjct: 606 RTTTRSSYGLVTSAGRLVLAHVVELPALAASPQTNVAGGIPADELIGMTESTDPIPGEHV 665

Query: 603 VTAFVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV- 654
           V A   D           L + +  G             T    + + +   + +     
Sbjct: 666 VAAIPMDQRDDDGPTPAPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGDSVLFAAD 723

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
               D +  +  +  LL F    +    R   G+      +G  +          + W  
Sbjct: 724 AADEDRLVFIASDSSLLTFDAGNVRPQGRTAGGMAGIRLAEGCTAITFNVVPAGKIAWTY 783

Query: 714 SAG 716
             G
Sbjct: 784 EEG 786


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 379/743 (51%), Gaps = 32/743 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL   + +KKSAR VGE
Sbjct: 13  IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA RYTEAR++    
Sbjct: 73  IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGF 132

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G AT+I  HNV E+ +
Sbjct: 133 ELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLD 192

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I+NP+  ++ +L+ + GPDFPTGG+ V   + +   Y+ G+G F ++A++     
Sbjct: 193 GLSYRIENPDCDLKAILKIVKGPDFPTGGL-VYFEQELANIYQTGKGKFVIQAKYET-NT 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S      ++      L 
Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLS 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D +M  +F  + ++  F LN  V++     +V  L     ++LA   E++   + + + 
Sbjct: 311 ADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRV-GLLAYFDQFLAFAHELIINSAKYDLA 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++R+EI+KGL+ A   IDEII +IR   ++   K  ++ +++ T NQ +AI++LRL  
Sbjct: 370 LANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQ 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   + +E   L    +  + L+   + +   +  +  + K+ F++       R  
Sbjct: 430 LTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQP------RRA 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDSLKIALHA 557
                   +       IE + + ++IS+ G     +   +    + FK E D L      
Sbjct: 484 QIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVV 543

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDST---C 612
             +D   ++++ G   T+P    LS       E +     L  ++ +V A + +      
Sbjct: 544 QNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQ 603

Query: 613 KLLVVSSK-GNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH---VAVVGE 666
           +LLV++S+ G    VE S++I NT++ K+   + +   +K+      T      V +V  
Sbjct: 604 QLLVLTSQCGMVKRVELSKVI-NTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSS 662

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +     F  ++IP +S +G GV+    K +  +   +  +  + L  I+S G  YN    
Sbjct: 663 SNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFEVV 722

Query: 725 DLLGWLGKRGGVGSLVPKGFPRS 747
           +L   +  R  VG  +    P++
Sbjct: 723 ELA--VASRMSVGKKLI---PKT 740


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/710 (28%), Positives = 359/710 (50%), Gaps = 31/710 (4%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  D       +  EN+   ++   + +R+  Y+   I++RAIPD RDG KPV RRI+++
Sbjct: 1   MKKDRKEEIQEVT-ENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  + L     FKKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +   +PLI   GN G+
Sbjct: 60  MWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGS 119

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           ID D AAA RYTE+R+ +++EL+L+ +D   V     +++ + EP+V P+ FPNLL NG 
Sbjct: 120 IDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIA G AT IP HN+ E+ +A +ALI NP ISIE+L E + GPDFPTG I +     I 
Sbjct: 180 KGIAAGFATEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAI-INGINEIK 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
           ++   G+G   + +++      +       I + EIP+ V KS+L+  I  + I K+I  
Sbjct: 239 KALSSGQGRITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISG 298

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           ++++ D++  +   +        + D ++  +   +++   +  NM  +     P ++ L
Sbjct: 299 IKEVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNN-RPVILNL 357

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-- 415
              L  +L+H +EV     ++ ++    R+EI++G +      DE+I +I+  D  K   
Sbjct: 358 YSALIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGV 417

Query: 416 --VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              ++++F  +E Q  AI  LRL  L ++++ + + E  NL  + E  + LLN   +   
Sbjct: 418 ILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQ 477

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
            +  ++ E+K  +SK       R T     + DK    + + + E   + I+  G+ + +
Sbjct: 478 YLIKQLLEIKNQYSKP------RLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKI 531

Query: 534 KSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGE 588
                   +LS    KE D++      ++  +IL  +  G  + +        + +  G+
Sbjct: 532 SLKVYTSNELSTFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQ 591

Query: 589 AIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKV 644
            I  ++ L  ++ I+       +++    +++S  G A  V   +    +  K KT +  
Sbjct: 592 HISSIVALESSEKIIRVIEITSFNNYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSF 651

Query: 645 SSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMS---RGKGVRL 689
             +    +  +++ D   + ++  N    + S +++       + +G+RL
Sbjct: 652 KDDNDELIDAQISNDEKMLFILLNNGMYHLVSENELKV-GISLKARGIRL 700


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/746 (27%), Positives = 376/746 (50%), Gaps = 31/746 (4%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           ++V    L   L E+++ Y+   I++RAIPD++DG KPV RRI+++M ++GL     +KK
Sbjct: 6   DSVINSQLEKILAEKFIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD S+YD+LVRLAQ +    PL+   GN G+ID D  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++E +L+ + ++ V F   +++ + EP + P+ FPNLL NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +AA+ +I NP I+IE++   I+GPDFPTGGI V  +  I ++++ G+G  ++ +
Sbjct: 186 NLGEVIDAAILMIKNPGITIEEISTIILGPDFPTGGI-VYGKSGIFDAFKTGKGKIKISS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + + E   G   I +T IP+ + KS LIE+I ++    +I  ++++ D+S ++   +L 
Sbjct: 245 DYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVSILI 303

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              +  +PDL++  +   + ++  +  N   +     P+++ +  ++  +L H R++   
Sbjct: 304 ELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNS-PKLLSIKEMIFYYLEHLRKIKLA 362

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQVDA 430
             +F +    +R+EI+ G L      DE+I +IR  D  K  +V+     F+ ++ Q +A
Sbjct: 363 EFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVNDLIKFFNFSQTQAEA 422

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I ++RL  L K+E+     E  NL     K   L+ +  +    +   + + K+   K  
Sbjct: 423 IASMRLYRLSKIEQQIYLEESKNLEKNITKFKKLIENKDEFDKNLINMLTDFKKHHGKP- 481

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKE 547
                R T    S       +  +++ E     I+  G  + L   +    ++       
Sbjct: 482 -----RKTRIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPN 536

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTA 605
           GD        +   + + L+  G+   L    +     +     +++ + + +NQ I++ 
Sbjct: 537 GDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSV 596

Query: 606 F---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMKLVVKVTG-DH 660
           F    ++S+  L+ +S    A  +   +++   +K    + +    +++  V       +
Sbjct: 597 FFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKN 656

Query: 661 VAVVGENRKLLIFSIDQIPEMSR-GKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRS 718
           + ++    + L  SI +IP  +R   G+++ +  K+  IS     +  E L  ID   + 
Sbjct: 657 IVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQF 716

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744
              +  +L        G   L PK F
Sbjct: 717 EKINTENLFF------GNKILTPKNF 736


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/468 (43%), Positives = 287/468 (61%), Gaps = 40/468 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  I+IE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++ L+ ++  F +NM  LS    P+++ L  IL  ++ HRREV+ RR
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALS-QGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                ++ LTE Q  AIL+LRL+ L  LE   
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEN 473


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 218/743 (29%), Positives = 379/743 (51%), Gaps = 32/743 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL   + +KKSAR VGE
Sbjct: 13  IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++GK HPHGD S+YD++VR++Q +      IS  GN G+IDGD+AAA RYTEAR++    
Sbjct: 73  IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGF 132

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L+ +++  V F + +++ + EP V P+  PNL  NGTSGIA G AT+I  HNV E+ +
Sbjct: 133 ELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLD 192

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I+NP+  ++ +L+ + GPDFPTGG+ V   + +   Y+ G+G F ++A++     
Sbjct: 193 GLSYRIENPDCDLKAILKIVKGPDFPTGGL-VYFEQELANIYQTGKGKFVIQAKYET-NT 250

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
             G   IV+TEIPY+  K+ ++++I ELI   ++  LE + D S      ++      L 
Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLS 310

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D +M  +F  + ++  F LN  V++     +V  L     ++LA   E++   + + + 
Sbjct: 311 ADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRV-GLLAYFDQFLAFAHELIINSAKYDLA 369

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             ++R+EI+KGL+ A   IDEII +IR   ++   K  ++ +++ T NQ +AI++LRL  
Sbjct: 370 LANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQ 429

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L   +   + +E   L    +  + L+   + +   +  +  + K+ F++       R  
Sbjct: 430 LTNTDIKVLFAEQKELEQTIQTAECLIAKPQARNQLLQAQFFQYKKQFNQP------RRA 483

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDSLKIALHA 557
                   +       IE + + ++IS+ G     +   +    + FK E D L      
Sbjct: 484 QIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVV 543

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDST---C 612
             +D   ++++ G   T+P    LS       E +     L  ++ +V A + +      
Sbjct: 544 QNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQ 603

Query: 613 KLLVVSSK-GNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH---VAVVGE 666
           +LLV++S+ G    VE S++I NT++ K+   + +   +K+      T      V +V  
Sbjct: 604 QLLVLTSQCGMVKRVELSKVI-NTKQIKSSCCMALRERDKLVNAFVQTKREPKLVCLVSS 662

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +     F  ++IP +S +G GV+    K +  +   +  +  + L  I+S G  YN    
Sbjct: 663 SNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFEVV 722

Query: 725 DLLGWLGKRGGVGSLVPKGFPRS 747
           +L   +  R  VG  +    P++
Sbjct: 723 ELA--VASRMSVGKKLI---PKT 740


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/714 (28%), Positives = 360/714 (50%), Gaps = 25/714 (3%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +   SL   + E+++ YA   I+ RAIPD+RDG KPV RRI+++M  +GL    A+KKSA
Sbjct: 8   IINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD S+YD+LVR++Q +    PL+   GN G+ID D AAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEVRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +++ L+L+ ++++ + +   +++ + EP V P+  PNLL NG  GIA G AT IP HN+
Sbjct: 128 EEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ + A+A+I N +I+  +L   I GPDFPTGGI V     I +++  G+G   + A++
Sbjct: 188 SEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGI-VYDNGGISDAFSKGKGRISLVAKY 246

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +    +    I +++IPY + K+ LI +I ++   +++  ++++ D+S  +  ++    
Sbjct: 247 EIVNKNKD-ISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISIDL 305

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
               + DL++  +   +DM+  +  N   +     P+++ L  ++K +L H + +  +  
Sbjct: 306 EADANVDLVVNYLLQKTDMQIYYSYNSVAICNNS-PKLVSLSEMIKYYLDHLKNIKLKEI 364

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDAIL 432
            + +    +R EI++G L      DE+I +IR  D  K      +++ F  T+ Q +AI 
Sbjct: 365 DYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQAEAIA 424

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +RL  L K+++    SE   L  + E +++L N        +   +++V+  F +    
Sbjct: 425 QMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQP--- 481

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL---HFKEGD 549
              R T             + +I+ E I   I+ +G+ + +   +  LS L     K+ D
Sbjct: 482 ---RKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKISLKNFSLSDLDKYAIKKDD 538

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            L +    +  D+I L++       L A  L   S +  G  +++ +D   ++ IV    
Sbjct: 539 FLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQIN 598

Query: 608 YDSTC---KLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG-DHVA 662
                    +++VS  G A  V    +    T+K     K+   +++          ++A
Sbjct: 599 ISENKNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKLKEHDELIGAYLTDNLANIA 658

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDS 714
           ++    + L  +   IP   R   GV+L + K G  I         E +  IDS
Sbjct: 659 IISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIADGEKIAIIDS 712


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 211/721 (29%), Positives = 360/721 (49%), Gaps = 30/721 (4%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   +  RY  YA   I++RA+PD+RDG KPV RRI+++M E+GL     FKKSAR+VG
Sbjct: 14  SLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPFKKSARVVG 73

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD S+Y+++VR++Q +    PLI   GN G+ID D AAA RYTEAR+++++
Sbjct: 74  DVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMRYTEARLSKIS 133

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
            L+L  +  D V F   +++ + EP V P+ FPNLL NG  GIA G AT IP HN+ E+ 
Sbjct: 134 SLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEIPPHNLGEVI 193

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  +A I NP I IE L   I GPDFPTGGII         ++  GRG   + +++ V  
Sbjct: 194 DGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAF-SGRGRITITSKYEV-- 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+TEIPY V KS+L+ +I E+ + K I  + ++RDE+  D   ++       
Sbjct: 251 ---HKNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVIDLEAGA 307

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   +M+ +   ++++  +  N N+      P +M L  +++ +L H + +   + +F +
Sbjct: 308 DASKIMKFLMQKTELQLYYSYN-NIAIHNNAPVLMNLHDLIQAFLDHVKVIQTNKINFEL 366

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDAILNLRL 436
           + + +R+EI++G +      D++I +IR  +  K      ++  F+ +E Q ++I NLRL
Sbjct: 367 EKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSEIQAESIANLRL 426

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L K +  +   E   L      + +LL+S  +   ++    +++K+ ++        R
Sbjct: 427 YRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAELIKIFKDIKKTYATP------R 480

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---KEGDSLKI 553
            T  +            +I+ E   V IS  G+I+       D + +     KE D+L  
Sbjct: 481 KTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIKRFNQKIHDSNEMQTYLLKEDDALIF 540

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                TT ++L+ +  G   ++P   +     +  G  +     L  N+ ++     D  
Sbjct: 541 LSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDDF 600

Query: 612 CK---LLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665
            K   + +++ KG    V+  E  ++   K    +K   +    L   +T D   + +V 
Sbjct: 601 SKDFSITLITKKGFGKKVQLPEFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVN 660

Query: 666 ENRKLLIFSIDQIPEMS-RGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723
              ++  FS +       +  GV++  +     IS  I +   + L ++  +G +   + 
Sbjct: 661 TKLEVYKFSENDFKTYGIKAAGVKISDNATKFEISAAIAYSQNDTLVFLTESGHARKINP 720

Query: 724 N 724
            
Sbjct: 721 K 721


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 194/499 (38%), Positives = 290/499 (58%), Gaps = 12/499 (2%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +   ++  +    L   +   +L YA S I  RA+PD RDG KPV RRI+  M  MGL
Sbjct: 6   TTTPPPIDGEIVEQDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGL 65

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                  KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG++D D  
Sbjct: 66  RPDRPHVKSSRVVGDVMGRLHPHGDVAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGP 124

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NGTSGIAVG
Sbjct: 125 AAPRYTEARLASPALALTADIDEDTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTSGIAVG 184

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++P HN+ E+  AA  LI +PE S+E L+ ++ GPD PTGG+IV   + I E+YR G
Sbjct: 185 MATNMPPHNLVEVVSAARHLITHPEASLEDLMAFVPGPDLPTGGMIV-GLDGIREAYRTG 243

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG F  RA   +E +      IVVTE+PY V   ++I +I + + AK++  + D+ D + 
Sbjct: 244 RGKFLTRATARIENITPRKKGIVVTELPYLVGPEKVIARIKDAVSAKKLQGITDVADLTD 303

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       +P+ ++  ++  + +E  F +N   L  G+ P+ + L  +L  ++
Sbjct: 304 RKNGTRLVIGVKNGYNPEAVLAQLYKHTPLEDSFGINNVCLVDGQ-PRTLGLRELLDVFV 362

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422
            HR  V+ RR+ FR+     R  +++GLLIA L+IDE+I ++R+ D     +  ++  F 
Sbjct: 363 RHRMTVVERRTRFRLGKRRERQHLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQVFD 422

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q   IL L+LR L K    +++ E D L  E E+++++L         ++ E+  V
Sbjct: 423 LSEAQASYILELQLRRLTKFSVIELEKERDELAREIEQLEAILADETLLRGVVSRELAAV 482

Query: 483 KEIFSKSTDLGRRRTTFCE 501
            E F        RRT   E
Sbjct: 483 AEEFGTP-----RRTVLLE 496


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/710 (28%), Positives = 351/710 (49%), Gaps = 29/710 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M  MGL  GA 
Sbjct: 24  LNAGSVLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS--AAA 128
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG         AA
Sbjct: 83  -TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA
Sbjct: 141 ARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +I S N+ E+C   +AL+ +P+  I   +     PDF  GG I+     + E Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRAR+ V     G   + +T+IP       +++KIAEL+ A +I  + D+RDE+  +
Sbjct: 258 SIKVRARYNV---VPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLN 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +DP+ LM  ++  + +E  F  N NVL  G+ P+VM +  IL+EW A R
Sbjct: 315 GLKLTLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQ-PRVMGVREILQEWTAFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
            E + RR+ + +   ++R+ +LKGL    L+ID+ I IIR  ++   V+ +      + E
Sbjct: 374 MECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIGFGIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V + 
Sbjct: 434 VQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDILAKPARIRRIIINELNDVAKK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-H 544
           +++      RR+        +++  ++ +I   P+TV  +  G+++ +   S+  +    
Sbjct: 494 YAQP-----RRSEILYDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAHK 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            KEGD +   +        L  +   + Y +    L  G+    G  +   + ++  ++I
Sbjct: 549 LKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLNELEDGKVAQMGIYLPGRLGMDEGENI 608

Query: 603 VT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           +      D +  +L   + G    +  +       + K     S +E +  ++ +  D  
Sbjct: 609 LAMVITGDYSGYVLFFFAGGKCAKIPLASYATKQNRRKLLKAYSDKEPLAKLLFLPEDTE 668

Query: 661 VAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSY-KDGGISDVICFKICE 707
           +A+     ++L+ +  QI        +GV + +  K+  I+ V+  +  E
Sbjct: 669 LAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVVTLKKNQTIASVVPAETLE 718


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 219/783 (27%), Positives = 354/783 (45%), Gaps = 89/783 (11%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            V+E++    L   + + +L YA S I  RA+PD RDG KPV RRII+ M EM L     
Sbjct: 15  QVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGEMNLTPDRP 74

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF  R  L+ G GNFG++D D  AA RY
Sbjct: 75  YMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD-DGPAASRY 133

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+   A  +   +DED VDF   Y+ +  EP V P+  PNLL NG SGIAVGMAT++
Sbjct: 134 TEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNM 193

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            +HN+ E+  AA  L+ +P+ ++E+L+ Y+ GPD+P G  I+  R  I E+Y  GRG   
Sbjct: 194 ATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGG-GIIIGRNGIREAYETGRGTLT 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVR 310
            R+    E V      IVVTE+P+ V   R++E+I+E +  +++  +    D +   +  
Sbjct: 253 TRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGT 312

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++       DP+ ++  +F  + ++  F +N   L  GR    M L  +L+ W+ HRR 
Sbjct: 313 RLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPH-TMGLKEMLQVWIDHRRI 371

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RRS FR +    R+ +++GLL+A ++IDE+I +IR  D     K  +++ F L + Q
Sbjct: 372 VVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIAVFDLDDVQ 431

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              IL+LRLR L ++   ++++E D+L    E+++ +L S ++    +  E+ +    + 
Sbjct: 432 AQYILDLRLRRLTRMSRIELEAERDDLKRRIEELERILASAQELDRVVVDEMDQAVAEYG 491

Query: 488 KSTDLGRRRTTFCEVSRA------------------------------------------ 505
                  RRT   + +                                            
Sbjct: 492 TP-----RRTVLLDEAEDGTLTPVTPHGDDSVNAAAMKAAAAAATLSSAEADVAAAAAAR 546

Query: 506 ----DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------SALHFKEGDSLKIAL 555
               D A +    I+ EP TV++   G I      ++D       S    K+ D +    
Sbjct: 547 KAGEDAAAVAALQIDDEPCTVMLGASGTIARSTPAALDAWESRSTSDERTKD-DHIVSIF 605

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLIDLNHNQDI 602
              T     L+++ G+        L +     +              +    D    + +
Sbjct: 606 RTTTRSSYGLVTSAGRLVLAHVVELPALAASPQTNVAGGIPADELIGMTESTDPIPGEHV 665

Query: 603 VTAFVYDSTCK-------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV- 654
           V A   D           L + +  G             T    + + +   + +     
Sbjct: 666 VAAIPMDQRDDDGPTPAPLAIGTRAGVVKRWNRE--APTTMDSWSVIDLKDGDSVLFAAD 723

Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWID 713
               D +  +  +  LL F    +    R   G+      +G  +          + W  
Sbjct: 724 AADEDRLVFIASDSSLLTFDAGNVRPQGRTAGGMAGIRLAEGCTAITFNVVPAGKIAWTY 783

Query: 714 SAG 716
             G
Sbjct: 784 EEG 786


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/473 (38%), Positives = 282/473 (59%), Gaps = 15/473 (3%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSLVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +L+ +DE+ VDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN++E+ +A    ++N +   E
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 216 K----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           +    ++  + GPDFPT G+IV S +   ++Y+ GRG  R+R    VEE  RG   +V+T
Sbjct: 184 ETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVIT 242

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIF 330
           E+PYQV     I  IAE +   ++  + +I D+ S      ++    R     +++ +++
Sbjct: 243 ELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLY 302

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             + ++T F  NM  +  G VP+ + LD +++ ++ H+ +V+ RR+++R++  + R  IL
Sbjct: 303 KHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHIL 361

Query: 391 KGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           +GL+ A   +DE+IA+IR     D  +  ++    + E Q  AIL+++LR L  LE  +I
Sbjct: 362 RGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRI 421

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +L  + AE   ++ +L   ++Q   +  E+ E+ +          RRT   
Sbjct: 422 IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD-----DRRTRII 469


>gi|332653603|ref|ZP_08419348.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
 gi|332518749|gb|EGJ48352.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 750

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 353/706 (50%), Gaps = 30/706 (4%)

Query: 7   SNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            N N + +   V    +   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M 
Sbjct: 14  DNPNVMGLHAEVLEQPITETLELNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMK 72

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGD 124
           L  G A  KSA +VG+   KL+PHGD ++YD++VRL++ +    +P +  +GNFG +   
Sbjct: 73  LL-GGARTKSANVVGQ-TMKLNPHGDAAIYDTMVRLSRGYGALLHPFVDSKGNFGKVYSR 130

Query: 125 SAA--AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
             A  A RYTE R+  +   + + +D+D VDF D Y+ +  EP + P+ FPN+L +   G
Sbjct: 131 DMAWAASRYTEVRLDAICGELFRDIDQDTVDFVDNYDGKMKEPTLLPTTFPNVLVSANQG 190

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMA+++   N+ E+C+  +A + +PE     L+  + GPD PTGG ++   +++ E 
Sbjct: 191 IAVGMASNLCGFNLGEVCDTTIAYLKDPEC---DLMATLKGPDLPTGGELIYDEKALGEI 247

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           YR GRG F+VR++W      +    I + EIPY      +++K+AELI A +I  + D+R
Sbjct: 248 YRTGRGSFKVRSKWRYL---KSENLIEIYEIPYSTTSEAIMDKVAELIKAGKIKEIADMR 304

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DE+      +     R  DPD LM  +F  + +      N N+L  G  P+VM +  IL+
Sbjct: 305 DETDLSGLKLTIDLKRGTDPDKLMAKLFRATPLMDSQSCNFNILIAGM-PRVMGVREILE 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF- 421
           EW A R + + RR    M+  + ++ +LKGL    L+ID  IAIIR  ++   V+ +   
Sbjct: 364 EWTAWRMDCVRRRVYHEMKKKEDKLHLLKGLRRILLDIDRAIAIIRETEEDAEVVPNLMI 423

Query: 422 --SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
              + + Q + + ++RLR++ K    +   E++ L  E   + + +N  K+    I  E+
Sbjct: 424 GFGIDQIQAEYVADIRLRNINKEYILKRTQEVEALEGEIADLQATVNDPKRIRKIITKEL 483

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
            +VK+ +++       R T        +   Q+      P+ + +S  G+++ +   S+ 
Sbjct: 484 TDVKKKYAQP------RRTDIVYEHMLEEEPQEDETPDYPVNLFLSREGYLKKITPQSLR 537

Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDL 596
             S   +KEGD   +   A   D +L+ +   + Y          +    G+ +   + +
Sbjct: 538 MASDQKYKEGDGPFLQWEATNRDELLVFTDKQQCYKTRLSEFDDSKASVLGDYLPTKLSM 597

Query: 597 NHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
              + ++ A    D + +LL     G    VE S     TR+ K     S +  +   + 
Sbjct: 598 EAEERVLWACIPGDYSGQLLFFFENGKVARVELSAYQTQTRRKKLTGAYSDKSPLVSALL 657

Query: 656 VTGD-HVAVVGENRKLLIFSIDQI-PEMSRGK-GVRLQSYKDGGIS 698
           +  D  +AV   + + +IF    + P+ +R   GV + + K   + 
Sbjct: 658 LREDLEMAVYSSDGRCMIFHTAALAPKTTRTTQGVNVMALKPKRVV 703


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 187/405 (46%), Positives = 275/405 (67%), Gaps = 2/405 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L   YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KK
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LA IDN  I+I++L++YI GPDFPT  + +  R+ I+++Y+ GRG   +R+
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAAL-ISGRKGIIDAYKTGRGKVYMRS 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   ++ 
Sbjct: 245 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 304

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV+ R
Sbjct: 305 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTR 363

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           R+ F ++    R  IL+GL +A  NIDEII +IR    P      
Sbjct: 364 RTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEG 408


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/584 (28%), Positives = 295/584 (50%), Gaps = 31/584 (5%)

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           ++L  +++D VDF   ++    EP + P++ P LL NG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 104 MLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVD 163

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-- 259
               LI NPE ++++LLEY+ GPDFPTGG+I+ +   I+E+YR GRG   VR +  VE  
Sbjct: 164 VLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNI-GILEAYRTGRGRIIVRGKTEVELL 222

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EIPYQ  KS L+EKIAEL+  K +  + DIRDES      ++    R 
Sbjct: 223 DSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRG 282

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            DP +++  ++ L+ +++ F  NM  +  G+ P++M L  +L+ +L  R  V+ RR+ F+
Sbjct: 283 SDPSIVLNKLYRLTALQSSFSCNMIGILDGQ-PKLMGLKELLQAFLDFRCSVVERRARFK 341

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           +     R  I++G+++   N+D +I +I+           + + F L+E Q +AIL++ L
Sbjct: 342 LSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNEFGLSERQAEAILDISL 401

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           R + +LE  +  +E  +L+ +  K+  LL+S KQ    I  E  E+K  FS        R
Sbjct: 402 RRITRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTP------R 455

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEG 548
            +  E + + +      +I  E + + +S +G+++ +K          ++  S    +  
Sbjct: 456 RSMLEDTDSGQLEDV-DVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVN 514

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAF 606
           D++   +  H  D +L  S  G  ++  A  +        G  +  ++ L+  + I +  
Sbjct: 515 DAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSII 574

Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VA 662
               +     LL+++  G    V  +   +    G   +++   +++K V   T D  VA
Sbjct: 575 PVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVA 634

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +  +N  +++ S + I  + R  +G      K G    +    I
Sbjct: 635 MASQNGMVILSSCEIIRALGRNTRGSIAMRLKQG--DKMASMDI 676



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 80/247 (32%), Gaps = 41/247 (16%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSLKIALHA 557
               + +  +   ++   ++++  G+I+ +         S  + A+    GD LK     
Sbjct: 568 ERITSIIPVSEFAEDQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQLVPGDELKWVRCC 627

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-----DIVTAFVYDSTC 612
              D + + S +G    L +  ++   G      + + L         DI+ A +     
Sbjct: 628 TNDDLVAMASQNGMVI-LSSCEIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLE 686

Query: 613 K----------------LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVV 654
           K                LL VS  G    V  S        R G    K S+E+ +  V 
Sbjct: 687 KALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVF 746

Query: 655 KV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICF 703
            V         + + V +V ++  +    +  I   SR  +GV L   +  G I      
Sbjct: 747 VVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLM 806

Query: 704 KICEGLT 710
              E  T
Sbjct: 807 SATETET 813


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 383/747 (51%), Gaps = 39/747 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++    L+L+ ++++ V+F + +++ + EP + PS  PNLL NG++GIA G AT+I
Sbjct: 121 TEARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +  ID+P   +E +L+ + GPDFPTGGII++  + I  +Y  G+G   
Sbjct: 181 PPFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+   E        +VVT+IP++  K+ +I  I E++ A ++P LE++RDES      
Sbjct: 240 IRAKIVNEND-----QLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIR 294

Query: 312 VLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           V+  +  + D  +   +   ++  + ++  +  N NV+   + P  M +   L  +L H 
Sbjct: 295 VV-LQTNTKDEKVLATIKNYLYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHA 352

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
             +L    SF ++   +R+E++ GL+ A   ID+II II+     +  +    +++  + 
Sbjct: 353 YTILRNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSA 412

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++LRL  L   +   +K E  +L    ++   LL       + +   +R  K++
Sbjct: 413 IQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKL 472

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVDLSA 542
           F+       +R +    +       + ++IEK+ + +V S  G I+++   ++  ++ ++
Sbjct: 473 FNT------KRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           L  K+ D L   +   + +++  ++  G    + A  +     R  G  I  L  +  N+
Sbjct: 527 LKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNE 586

Query: 601 DIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVT 657
            IV    + D   ++++VS  G    +  ++++ N +  K  T + +  ++++     ++
Sbjct: 587 KIVKLVELSDQNDRIVLVSKYGMIKQISVNDLV-NIKSTKPTTCMSLKDDDELVCANLIS 645

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL---TW 711
                + ++ +N   L F I+++     +  GVR    K     +VI F   +       
Sbjct: 646 DPNAELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTN--DEVIGFDQIKNSIDQLV 703

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGS 738
           +    +      + +      R   G 
Sbjct: 704 LVKNKQIKKLKASLIEN--QSRATQGK 728


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/728 (28%), Positives = 357/728 (49%), Gaps = 31/728 (4%)

Query: 2   GVDNISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           G  + +N N + +   V    +   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ 
Sbjct: 10  GAKHKNNPNVMGLRPEVLEQPITETLEINYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYT 68

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFG 119
           M +M L  G A  KSA +VG+   KL+PHGD ++YD++VRL++ +    +PL+  +GNFG
Sbjct: 69  MYQMKLL-GGARTKSANVVGQ-TMKLNPHGDAAIYDTMVRLSRGYGALLHPLVDSKGNFG 126

Query: 120 NIDGDSAA--AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            +     A  A RYTE R+  +   + + +D+D VDF D Y+    EP + P+ FPN+L 
Sbjct: 127 KVYSRDMAWAASRYTEVRLDGICAELFRDIDQDTVDFVDNYDGTMQEPTLLPTTFPNVLV 186

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           +   GIAVGMA+++   N+ E+C+A +  + +P+     L   +  PDFPTGG ++    
Sbjct: 187 SANQGIAVGMASNLCGFNLAEVCDATVEYLKHPDC---DLTAVLKAPDFPTGGELLYDAA 243

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I + Y  GRG F+VRARW      +    I + EIPY      +++K+AELI A ++  
Sbjct: 244 EIAQIYNTGRGSFKVRARWRYL---KSENLIEIYEIPYSTTVEAIMDKVAELIKAGKVKE 300

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           + D+RDE+      +     R  DPD LM+ +F  + +   F  N N+L  G  P+VM +
Sbjct: 301 IADMRDETDLTGLKLTIDLKRGTDPDKLMQKLFRATPLMDSFACNFNILIAGM-PRVMGV 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL+EW A R E + RR+ F M+    ++ +LKGL    L+ID  I IIR  ++   V+
Sbjct: 360 REILEEWTAWRMEGVRRRTYFVMKKKQEKLHLLKGLKKILLDIDRAIKIIRETEEDAEVV 419

Query: 418 VSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
            +      +   Q + + +++LR++ K    +   E   L  E   +  ++++  +    
Sbjct: 420 PNLMIGFGIDNIQAEYVADIKLRNINKEYILKRIEETSTLEEEIADLQDIVSNPGRIKKI 479

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I  E+  VK+ +++      RRT      +       +  I   P+T  +S  G+ + + 
Sbjct: 480 IIAELGAVKKKYAQP-----RRTEIIYEHQRLSEPEPEEEIPDYPVTAFLSREGYFKKIT 534

Query: 535 SHSVDL-SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQ 591
             S+ + S   +KEGD   +       D +L+ +   + Y     +    +    G+ + 
Sbjct: 535 PASLRMNSEQKYKEGDGAWLQWECTNRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLP 594

Query: 592 LLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             +++   + +V A    D +  LL     G A  VE S     TR+ K     S +  +
Sbjct: 595 TKLEMEAGESVVWACVPGDYSGNLLFFFRNGKAARVELSAYQTQTRRRKLTGAYSDKSPL 654

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSYKDGGISDVICFKICE 707
              + +  D  +AV+    + LIF    +        +GV + + K     D +  +  E
Sbjct: 655 AAALLLREDLELAVISTEGRCLIFHTALLAPKATRTTQGVNVMTLKPKYSVDRV--EPVE 712

Query: 708 GLTWIDSA 715
           G   +++A
Sbjct: 713 GSPIVNTA 720


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 194/693 (27%), Positives = 336/693 (48%), Gaps = 29/693 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V +  +   L   Y+ YA+S I  RAIP++ DGFKP HR+I++ M +MGL  GA   KS
Sbjct: 24  KVLSEPITHTLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGAR-TKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYT 132
           A +VG+   +L+PHGD ++Y+++VRL++      +  +  +GNFG       A    RYT
Sbjct: 82  ANVVGQ-TMRLNPHGDMAIYETMVRLSRGNEALLHAYVDSKGNFGKAYSRDMAFAASRYT 140

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++  +   + + +D+  VDF D Y+    EPV+ P+ FP++L N   GIAVGMA+SI 
Sbjct: 141 EVKLDPICNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGMASSIC 200

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N+ E+CE  + L+ +P      LL  +  PDFP GG+++   +++   Y  GRG  RV
Sbjct: 201 PFNLTEVCETTIRLMKDPAA---DLLPLLKAPDFPGGGLVLYDADTLRSVYETGRGSLRV 257

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+   ++ +    I +TEIP       ++++I EL+   ++  + DIRDE+      +
Sbjct: 258 RARY---QLDKAGRFIEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDLSGLKL 314

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R  D D LM  +F L+ +E  F  N NVL  G  PQV+ + G+L+ W A R + +
Sbjct: 315 TIDLKRGADGDKLMSRLFRLTPLEDTFGCNFNVLV-GGRPQVLGVRGLLRAWTAFRMDCV 373

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVD 429
            RR  F +     R+ +L+GL    L+ID+ + I+R  D+   V+ +      + E Q +
Sbjct: 374 RRRLRFDLGRAKDRLHLLRGLEKILLDIDKAVRIVRETDEESEVVPNLMIGFGIDEVQAE 433

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR   +    +   E++ L  E   +++ L    +    IA E+R + + +   
Sbjct: 434 FVAEIKLRHFNRAYILEKTQEIEQLEREIADLEATLGEDARMLRLIADELRAIVKKY--- 490

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEG 548
              GR R +       ++    +  I   P+T+ ++  G+ + +   S+ +S     KE 
Sbjct: 491 ---GRPRRSLILYDVKEETAPDEEEIPAYPVTLFLTREGYFKKITPQSLRMSGEQKLKES 547

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           D+L   + +     +L  +   + Y         G+    G+ +   +  +  + +    
Sbjct: 548 DALVQTVESTNGCELLFFTDRCQVYKSSVSEFEDGKASVLGDYLPARLGFDEGEALRRMV 607

Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
           V       LL + + G A  VE +     TR+ K     S +E +  +  +T D  V + 
Sbjct: 608 VAKQYDGWLLFIYANGKAAKVELASYKTKTRRRKLVNAYSDKESLVAMFHLTEDREVVLT 667

Query: 665 GENRKLLIFSIDQIPEMS--RGKGVRLQSYKDG 695
               K+L+     +P  +    +GV   + K G
Sbjct: 668 SSAGKMLLLDTGAVPVKTTHTTQGVTAMTLKPG 700


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/737 (28%), Positives = 377/737 (51%), Gaps = 24/737 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+   ++       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL     +KKS
Sbjct: 7   NLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA RYTE R
Sbjct: 67  ARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++     +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+I  HN
Sbjct: 127 LSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ ++    ID P   ++++L+ + GPDFPTGG  V   +S+ + Y+ G+G F ++A+
Sbjct: 187 TNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGG-NVYFEKSLSDIYQAGKGKFIIQAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +   EV +    I +T+IPY+  K+ ++++I E+I   ++  +E + D S  +   ++  
Sbjct: 246 Y---EVNKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIK 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               L  + +M  +F  + ++  F LN  V++     Q+  L   L  +L    E++  +
Sbjct: 303 HKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQI-GLLSYLDHFLKFCHELIINK 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++   +R+EI+ GL+ A   ID+II +IR   ++   +  ++  F  T NQ +AI+
Sbjct: 362 AKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +LRL  L   + +++  E + L       + L+ S K +   +  +    K+ F +    
Sbjct: 422 SLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQ---- 477

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-EGDSL 551
            +RR+  C      K    + +IE +   V+I+  G     +S+ +  S   FK E D++
Sbjct: 478 -QRRSQICGFINQKKVEESE-LIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDTI 535

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
             A     TD+I ++++ G    +P   L   S       +     L   + IV     +
Sbjct: 536 IFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTMN 595

Query: 610 S-TCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA-VVGE 666
           S    +LV++SK G    ++ +++     K    + +  ++ +        D +  +V +
Sbjct: 596 SVNQPILVLTSKLGMVKRIDLTKLNIKPLKATLCISLRDKDHLVSAFLQQDDKLICLVSD 655

Query: 667 NRKLLIFSIDQIPEM-SRGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724
           +    +F  ++IP + S+G GV+    K +  I  V+ F+  E L  I S G   N  + 
Sbjct: 656 HNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINLKQT 715

Query: 725 DLLGWLGKRGGVGSLVP 741
           +L   +  R      +P
Sbjct: 716 EL--VVVSRMATAKKLP 730


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 194/699 (27%), Positives = 346/699 (49%), Gaps = 30/699 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   LE+ Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 26  VEEQLITDTLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
            IVG+   +L+PHGDQ++Y+++VRL++ +    +P +  +GNFG       A    RYTE
Sbjct: 84  NIVGQ-TMRLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDMAYAASRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++  +   + + +D+D V+F   Y+    EP + P+ FP++L N   GIAV MA++I  
Sbjct: 143 AKLDPICNELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAICP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+QE+CEA +A + N   S   L E + GPDFP GG +V++   + + YR GRG  RVR
Sbjct: 203 FNLQEVCEATIAFMKN---SECDLTEILKGPDFPGGGFLVQNPSELEKIYRTGRGSIRVR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +R+      + + CI +TEIP       +++KI +L+   ++  + D+RDE+      + 
Sbjct: 260 SRYNY---DKSNNCIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKLT 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  DPD LM  +F L+ +E  +  N NVL  G  P+V+ +  +L EW+A R E + 
Sbjct: 317 IDLKRGTDPDRLMRRLFKLTPLEDSYSCNFNVLIAG-TPRVLGVYDLLDEWVAFRVECIK 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDA 430
           RR  F +     ++ +L+GL    L+ID+ I I+R  ++ K V+ +      + E Q + 
Sbjct: 376 RRVWFELTKKKEKLHLLQGLQKILLDIDKAIRIVRETEEEKEVVPNLMIGFGIDEIQAEY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  ++LR L +    +  +E+D L+ E   ++ +L   ++    I  E+++V + +++  
Sbjct: 436 VAEIKLRHLNREYILKRTAEIDQLIQEIADMEEILADKRRVKQIIIKELKDVIKKYAQP- 494

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-HFKEGD 549
                R +      +     ++  I   P+ V +S +G+ + +   S+ +S     KE D
Sbjct: 495 -----RRSLFIYPDSVFDDEEEEEIPNYPVHVFLSEQGYFKKITPQSLRMSGEHKLKEDD 549

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT-AF 606
            +   +       +L  +   + Y          +    GE +   +     + +V  A 
Sbjct: 550 RMITHIETTNNTDLLFFTDKMQVYKYNLSQFPDTKASVLGEYVPAKLGFEEEERLVGMAL 609

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D +  +L     G    V        T + K     S +  +  +     D    +  
Sbjct: 610 TKDYSGNILFFFENGKVAKVPIKSYETKTNRKKLANAYSDKSPLIALFPEAEDGEYIITS 669

Query: 666 ENRKLLIFSID--QIPEMSRGKGVRLQSY-KDGGISDVI 701
            N+K+L+FS     +      +GV++ +  K+  +  V+
Sbjct: 670 NNQKVLLFSSAMIAVKATKNTQGVQVMTLNKNCTVESVV 708


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 205/747 (27%), Positives = 382/747 (51%), Gaps = 39/747 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR++    L+L+ ++++ V+F + +++ + EP + PS  PNLL NG++GIA G AT+I
Sbjct: 121 TEARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P  N++E+ +  +  ID+P   +E +L+ + GPDFPTGGII++  + I  +Y  G+G   
Sbjct: 181 PPFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDD-DGIKNAYLTGKGKIV 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +RA+   E        +VVT+IP++  K+ +I  I E++ A ++P LE++RDES      
Sbjct: 240 IRAKIVNEND-----QLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIR 294

Query: 312 VLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           V+  +  + D  +   +   ++  + ++  +  N NV+   + P  M +   L  +L H 
Sbjct: 295 VV-LQTNTKDEKVLATIKNYLYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHA 352

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTE 425
             +L    SF ++   +R+E++ GL+ A   ID+II II+     +  +    +++  + 
Sbjct: 353 YTILRNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSA 412

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++LRL  L   +   +K E  +L    ++   LL       + +   +R  K++
Sbjct: 413 IQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKL 472

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVDLSA 542
           F+       +R +    +       + ++IEK+ + +V S  G I+++   ++  ++ ++
Sbjct: 473 FNT------KRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTS 526

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
           L  K+ D L   +   + +++  ++  G    + A  +     R  G  I  L  +  N+
Sbjct: 527 LKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNE 586

Query: 601 DIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK--TFLKVSSEEKMKLVVKVT 657
            IV    + D   ++++VS  G    +  ++++ N +  K  T + +  ++++     ++
Sbjct: 587 KIVKLVELSDQNDRIVLVSKYGMIKQISVNDLV-NIKSTKPTTCMSLKDDDELVCANLIS 645

Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL---TW 711
                + ++ +N   L F I+++     +  GVR    K      VI F   +       
Sbjct: 646 DPNAELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTN--DQVIGFDQIKNSIDQLV 703

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGS 738
           +    +      + +      R   G 
Sbjct: 704 LVKNKQIKKLKVSLIEN--QSRANQGK 728


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/477 (35%), Positives = 297/477 (62%), Gaps = 5/477 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N++ +SL   + ER+  Y+   I++RA+PD+RDG KPV RRI+++M++    F  +++KS
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++++A  +LQ +++  V F   +++ + EP V P+ FPNLL NG++GI+ G AT IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +AA+ +ID+P   I+KL+E++ GPDFPTG I ++ R+ I ++Y  G+G   VR++
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAI-IQGRDEIKKAYETGKGRVVVRSK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E++  G   IV+TEIPY++ K+ L++KI ++ +  ++  + ++RDES  D   +   
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  + +L++  +F  +D++  +  NM  +      QV  +  IL  ++AHRREV+  R
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQV-GIVPILSSYIAHRREVILAR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           S F  +  ++R+ I++GL+     +DE+IA+IR   N+   K  +   +  TE Q +AI+
Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            L+L  L   +   ++ E   L  +   + +++   +  +N +  E+REVK+ F+  
Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 477


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/642 (24%), Positives = 273/642 (42%), Gaps = 106/642 (16%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-- 263
           LIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RAR  VE++ +  
Sbjct: 2   LIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRARSIVEDIDKVG 60

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P+
Sbjct: 61  GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPE 120

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++ +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+ RR+ F ++  
Sbjct: 121 VILNNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVVTRRTVFELRKA 179

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------------- 416
             R  IL+G  +A  NID +IA+I+    P                              
Sbjct: 180 RERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCR 239

Query: 417 ----------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
                        ++ L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +LN
Sbjct: 240 PENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILN 299

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S  +    I  E+  ++  +  +     RRT   E+  A        +I +E   V IS+
Sbjct: 300 SATRLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLITEEERVVTISH 351

Query: 527 RGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            G+ ++         +      SA   K+ D +   L A++   +L+ S+ GK Y L   
Sbjct: 352 GGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTY 411

Query: 579 NLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD--------------------------- 609
            +   S    G  +  L+ L+  + I T    D                           
Sbjct: 412 EIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSE 471

Query: 610 ---------------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
                              + + ++ G                G   L++   + +    
Sbjct: 472 TEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAA 531

Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTW 711
              G+  + +  +  K+  F    +  M R  +GVR     +G    +I   I  EG   
Sbjct: 532 ITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGMRLPEG--QKLISMLIPEEGSQI 589

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + ++ R Y +          KRGG G +      R+G+ + +
Sbjct: 590 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGA 631



 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  S  L AL   EGD L  A
Sbjct: 471 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISA 530

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 531 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 589

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 590 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 649

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 650 VRTRVGEVSSLGRNTQGVTLIKLASD 675


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/699 (28%), Positives = 362/699 (51%), Gaps = 32/699 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +   S+   +EER+  Y+   I  RAIPD+RDG KPVHRRI+++M  +GLDF   F
Sbjct: 6   IIEKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKF 65

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARIVG+VIGK HPHGD SVY++++ LAQ +    PL+S  GN G+ID D  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMRYT 125

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ ++A  I+  + +  V F   +++ ++EP+V PS FPNLL NG+ GIA+GMAT +P
Sbjct: 126 EVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMP 185

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES---YRLGRGG 249
            HN+ EI +A +  I +P+ S  +L  +++GPDFPTGG+ ++  + I E+    R  +  
Sbjct: 186 PHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGV-IKGTKGIAEALENGRNEKNK 244

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            ++  ++ +   G+  + I +TEIPY V K +L+ +I  +I  K I  + +I+D S  D 
Sbjct: 245 IKLFCKYEIYTKGKNKF-IEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDG 303

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +L   + + + + ++  +F  + M+  +  N  V+     P +M L+ ++  ++AH +
Sbjct: 304 INILITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNS-PTLMNLENLISSYIAHIK 362

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTE 425
            V     ++ +     R+EI+ G +       ++I +IR     K      ++  F+ T+
Sbjct: 363 NVKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVFNFTK 422

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q ++I  LRL  L + ++     E   +      I++LLN+ K+  N +  EI+ +K+ 
Sbjct: 423 LQAESIAELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKAIKKE 482

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH---SVDLSA 542
           FS        R T  E    + +  +  ++++E I V IS  G+I+        + +   
Sbjct: 483 FSVP------RKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIKRFSDKVLENNEWKN 536

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLI-DLNHN 599
              KE D+L      +T + +L  +  G    +    +     +  G  I L   D+  +
Sbjct: 537 YALKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQEVKWKDLGNNINLFASDIRPD 596

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVK 655
           ++IV+      ++    +++ + +G    V   +  ++   K  T + ++ ++ +     
Sbjct: 597 EEIVSVIEVSDFEENLSVMLGTKQGYFKRVMLKDFLVSRFTKKYTAMPLNEDDYLIKAKL 656

Query: 656 VTGD-HVAVVGENRKLLIFSIDQIPEM---SRGKGVRLQ 690
              D ++  + EN  +  FS  +I  M   ++ +G +  
Sbjct: 657 TNLDSYLVAITENSIISKFSESEI--MFYSTKARGSKAI 693


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/690 (29%), Positives = 343/690 (49%), Gaps = 29/690 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   LEE Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 26  LIEQPIVSTLEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
            +VG    KL+PHGDQ++Y++LVRL++      +P +  +GNFG       A    RYTE
Sbjct: 84  NVVGA-TMKLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSRDMAYAASRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            ++  +A  + + +DED VD  D Y+    EP +FP  FP++L N   GIAVGMA+SI  
Sbjct: 143 VKLDPIANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIGIAVGMASSICP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+CE  +A++ NPE     LLE +  PDFP GG IV   +++   Y  GRGG RVR
Sbjct: 203 FNLAEVCETTIAVLKNPEH---DLLETLHAPDFPGGGYIVYDEQALRRIYDTGRGGIRVR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR+      R + CI VTEIP       +++K+ +L+ A +I  + D+RDE+  +   + 
Sbjct: 260 ARYTY---DRANNCIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMRDETDLNGLKLT 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
           F   R +DPD LM+ +F L+ +E  F  N NVL  G +P+V  +  +++EW A R E + 
Sbjct: 317 FDLKRGVDPDRLMQRLFKLTPLEDSFSCNFNVLI-GGMPRVCGVRTLIEEWAAFRSECVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDA 430
           RR   ++     ++ +L+GL    L+ID+ + I+R   + + V+ +      + E Q + 
Sbjct: 376 RRVFRQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQEEREVVPNLMIGFGIDEVQAEY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  +RLR L +    +   E+  L  +  +++S+L   ++    I  E+  V + ++K  
Sbjct: 436 VAEIRLRQLNREHILKRTEEIGQLRDDIAEMESILEHREKIRAIIISELENVGKKYAKP- 494

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-HFKEGD 549
                R +        +    +       + +  +  G+ + +   S+ +S     KEGD
Sbjct: 495 -----RRSLLYYPTEGEDEAGEEPAPDYAVHLFFTREGYFKKITPQSLRMSGEHKLKEGD 549

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQD-IVTAF 606
           ++  A+ A     +L  +  G+ Y   A +    +    G+ I   + ++  +  +  A 
Sbjct: 550 TVTQAVEATNNSDLLFFTDRGQVYKAKASDFDDTKASVMGDYIPARLGMDEGESAVYMAV 609

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D    +L V   G A  V+ +     T + K     S+   +  + ++  D    +  
Sbjct: 610 TADYAGYMLFVFQNGKAAKVDLAGYATKTNRKKLVGAYSTASPLAGIFQLAQDAEYLLTS 669

Query: 666 ENRKLLIFSID--QIPEMSRGKGVRLQSYK 693
              ++LI       +      +GV + + K
Sbjct: 670 SAGRMLIVHTGAVAVKTTRSTQGVAVMTLK 699


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/512 (40%), Positives = 318/512 (62%), Gaps = 14/512 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 325

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 326 GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 385

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 386 MRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 445

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 446 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 506 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 560

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 561 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 620

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 621 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 680

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 681 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                 G  R +            +Q ++  E
Sbjct: 741 ------GDERRSPIVARAEAVQIKEQDLMPAE 766


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/498 (41%), Positives = 301/498 (60%), Gaps = 45/498 (9%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR++ AM  +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  IL  +D++ VDF   Y+ 
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            +  P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+  A LALIDN E++ E++LE+
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279
           I GPDFPT GI +  R  I E+YR GRG  ++RAR  ++     G   I+V E+PYQV K
Sbjct: 182 IPGPDFPTAGI-ISGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNK 240

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEK+AEL+  KR+  +  +RDES +D   ++    R    ++++ +++ L+ M+  F
Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            LNM  L+ G+ P++  +  +L+ ++ HRREV+ RR+ F ++    R  IL+GL IA  N
Sbjct: 301 GLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALAN 359

Query: 400 IDEIIAIIRNE-----------------------------DKPKPVMVSR--------FS 422
           ID II +I+N                              D  +P  +          + 
Sbjct: 360 IDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYY 419

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           LT  Q  AI++L+L  L  +E  +I SE   LL    ++  +L +  +    I  E+  +
Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAI 479

Query: 483 KEIFSKSTDLGRRRTTFC 500
           ++ F        RRT   
Sbjct: 480 RDEFGDE-----RRTEIT 492


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 213/743 (28%), Positives = 380/743 (51%), Gaps = 26/743 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MNKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ SR  I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSRS-IKELYETGKGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L  G+ P+ + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGK-PKQLNLKEYLSYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R E++ +R+ + ++    ++EI +GL  A  NI ++I II   +   K +  ++  F 
Sbjct: 359 EFREEIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIENFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q +++L++ L+ L  LE+ +I  E+ +L  +K     LLN        +  E+  +
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNYFQKLLNERGILLELLVEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++        +                     +   + I NR +++ +   +   S 
Sbjct: 479 KKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILGNYKKSF 538

Query: 543 LHFKE--GDSLKIALHAH--TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598
               +   +        +     +++ ++  GK + +   + +S R +    ++L +++ 
Sbjct: 539 EVVNKIIDNKNIQKFICNIEKNIKLIGITNTGKVFNIDWESNIS-RDYKLDNKILGNIHA 597

Query: 599 NQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKV 656
           N+ I   +   ++   L +++S G    V   E +  + +  T  K+ +  + +   +  
Sbjct: 598 NEIINFHSIKKETKNYLCILNSDGRFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISN 657

Query: 657 TGDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTWI 712
              ++ ++    ++  F++    +   S+  +G+ +        I     F   E +  I
Sbjct: 658 ESKYLMILTSIGRIFKFNLSNKFLTPTSKQSQGLIITKLLPTEKIVSCCTFHDGENIFLI 717

Query: 713 DSAGRSYNRSENDL----LGWLG 731
              G+ +  + N++       LG
Sbjct: 718 SKKGKIFCINSNEIYCSNEYRLG 740


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 199/779 (25%), Positives = 369/779 (47%), Gaps = 73/779 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +  V     + + Y+ Y++S I ERA+PD+RDG KPV RRI+++++ +        
Sbjct: 1   MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K ARIVG+ +GK HPHGD S+Y+ LV +AQ +    PL+   GNFG++DG  AAA RYT
Sbjct: 60  RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYT 119

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+++  E   ++ +      F   ++  ++EP   P + PN+L +G++GIAVGMAT+I
Sbjct: 120 EARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNI 179

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P+HN+ E+ +A +  +++PE+ +E LL+ + GPDF TGGII  S+E +++ Y  G G  +
Sbjct: 180 PTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIK 239

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           VR +  + ++G G   I VTEIP+ +    ++ ++ +AEL   + +P + DI D   ++ 
Sbjct: 240 VRGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNG 299

Query: 310 RIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +     +    +    ++  ++  + +E  F +N+N +  G+ P+VM L  IL  +  
Sbjct: 300 ECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGK-PEVMGLRRILSIYTD 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPK--------- 414
            +  +   + +  ++      EI  GLL A   ID II I+R        K         
Sbjct: 359 FKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTS 418

Query: 415 ---------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
                             TE Q DAIL +RL+ L  LE   +K EL++     +K   LL
Sbjct: 419 NITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKYSKLL 478

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S      Q+  ++ E+KE ++        R T    +   +  +++A   +  + V++ 
Sbjct: 479 ESKSNMKKQMIADMLEIKEKYAIP------RKTVI--ADCGEVVVKKAQAVETEVAVLLD 530

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----- 580
              +I+ + ++  D +          + +     T+R+ + + + + Y +   ++     
Sbjct: 531 RFYYIKVVDANLYDKNKAQI--DKDYRFSFKCKNTERVGVFADNNQMYMIKVADIIKLQA 588

Query: 581 ---LSGRGHGEAIQLLI-----------DLNHNQDIVTAFVYDS--TCKLLVVSSKGNAF 624
                 +G+G  +   +           ++N N++I+     +      LL V+  G A 
Sbjct: 589 KKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKHGQAK 648

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN--RKLLIFSIDQIPEMS 682
           +V  +      +     +  S +E+  + +        +V ++         I +IP   
Sbjct: 649 LVPGNNYDVLRK----MIAASKQEEDIIFIHDAEMEDFIVVKSMLGYYARIQISEIPVKG 704

Query: 683 RGKG-VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           +G G +RL +  D    + +     +   ++D+    + R +        KRG  G+ +
Sbjct: 705 KGAGCIRLVNITDDDEIEEVAVGSTKDSFFVDNTEILFTRIKA------CKRGSKGTKL 757


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/738 (28%), Positives = 366/738 (49%), Gaps = 78/738 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    LQ ++ D V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI + +IS  KL + I+GPDFPTGG ++ +   I   Y  GRG  
Sbjct: 181 IPPHNLGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYN-NGIKNVYLEGRGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EE+  G        ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TIRGVIKSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  +P++++ +++  + +++ F   +  L  G+  Q + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNPEIVISNLYKKTTLQSNFGAILLALVNGKPVQ-LTLRKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R E + +R+ + ++    ++EIL+G  IA  NI  II II+N +   + K +++ +  
Sbjct: 359 EFREETIRKRTKYFLKIASEKLEILEGFSIATKNIKNIIEIIQNSENVSEAKSILIPKLD 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q DA+L++ L+ L  LE+ Q+++E++ L  +K+ + +LLN+       +  E+ E+
Sbjct: 419 LSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKYLSTLLNNRSLLLETLIKELIEL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K+ F+        +                  +  +   + I NR + + L  ++     
Sbjct: 479 KKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDAKISIDNRFYFKKLIYYNYKKLL 538

Query: 541 -SALHFKEGDSLKIAL-----------HAHT----------------------------- 559
                F E  +++  +              +                             
Sbjct: 539 DQENKFIENKNVQKFICNIKKSLRIIGVTSSGKVLQINWKSIINNVYKLDNKILGNINPK 598

Query: 560 -----TD-------RILLLSTDGKAYT--LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                 D        I ++ +DGK     L    + S R     I  +  L ++  I+ +
Sbjct: 599 EIINFHDLDSNLENYICIICSDGKFKKVLLDKDMIRSTR-----IFSITKLKNSTKIIDS 653

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           F+Y     +++++S G  F    S       +   +G   + +  +E++    K     +
Sbjct: 654 FIYSQEENIIILTSIGRIFKFNLSNEYLKPSSKQSQGILLVNLLPKEQIVSCCKSKEKDL 713

Query: 662 A-VVGENRKLLIFSIDQI 678
             ++    K     I+++
Sbjct: 714 LYLISNKGKFFELKINEV 731


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/512 (40%), Positives = 317/512 (61%), Gaps = 14/512 (2%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +L     +  S+    E+ YL YA+  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSS 325

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
              KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S AA
Sbjct: 326 GKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAA 385

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            R TEA+++  +EL+L  + +   +++D ++    EP+  P++ PN+L NGT+GIAVGMA
Sbjct: 386 MRXTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMA 445

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +  +ALI NP+ S EKL EYI  PD PT   I+   E +++    GRG
Sbjct: 446 TDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            +R+RA + +E        IV+TE+PYQV  S++I +IA+ + AK++PL+ D+RDES  +
Sbjct: 506 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHE 560

Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
              R+V+  ++  +D + +M  +F  +D+E+ + +N+N++     PQV  +  IL EW+ 
Sbjct: 561 NPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIE 620

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R++ + RR  + +  I++R+ IL GLLIAYL+ID +I IIR ED+PKPV++  F++ E 
Sbjct: 621 IRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEI 680

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL L+LR L KLEE +I+ E D L A+   I   L + +   N I  E++E  + F
Sbjct: 681 QAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                 G  R +            +Q ++  E
Sbjct: 741 ------GDERRSPIVARAEAVQIKEQDLMPAE 766


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/453 (41%), Positives = 278/453 (61%), Gaps = 11/453 (2%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     ++K AR+VG+V+GK HPHGDQSV
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153
           YD+LVRL Q F  RYPL++G GNFG++D D  AA RYTE R+  +  E +L  V E  VD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           F   ++    EP V P++ P L+ NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNP++ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-----GRGSWCI 268
            +KL++ I GPDFPTGG I+ + E I E+Y  GRG   +R    +E+V      R    I
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIAT-EGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAI 239

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           VVTE+P+QV K+  IEK+A L+ A ++  + DIRDES  +   V+    R   P++++ +
Sbjct: 240 VVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELKREATPEVVLHN 299

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  +D+ ++F      L   + P+ + L  IL+E+L  R + L RR    ++  +RR  
Sbjct: 300 LYQHTDLMSKFGAIFLALVNSQ-PRQLSLKQILEEFLGFREQTLLRRYRSELEIAERREH 358

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           ++ GLL A   +DE+I I+RN       K  + +R   +  Q DAIL + LR L  LE  
Sbjct: 359 LVGGLLKALSALDEVIDILRNAPDGSSAKMSLETRLDFSTEQADAILAMPLRRLTGLEGK 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           +++ E   L A+ +++  LL+   +    +  E
Sbjct: 419 KLQEEATELAAQIQRLRRLLSERSELLKSLKKE 451


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 274/500 (54%), Gaps = 19/500 (3%)

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319
            +    +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +   R+V+ P++  
Sbjct: 4   KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 63

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +D D +M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R
Sbjct: 64  VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 123

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L
Sbjct: 124 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHL 183

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            KLEE +I+ E   L  E++++  +L S ++  N +  E++      + +   G  R + 
Sbjct: 184 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADAHAYGDDRRSP 237

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
            +     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +
Sbjct: 238 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 297

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619
              ++ + + G++Y +    L S RG GE +   + L     +    +     KLL+ S 
Sbjct: 298 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 357

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQ 677
            G  F+   ++++A  R GK  + +     +   V +    D +  + +  ++L+F +  
Sbjct: 358 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 417

Query: 678 IPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
           +P++S+GKG ++ +         + G++ +        LT I    R       +L    
Sbjct: 418 LPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVT 476

Query: 731 GKRGGVGSLVPKGFPRSGKF 750
           G+RG  G+ + +G  R  + 
Sbjct: 477 GERGRRGT-LMRGLQRIDRV 495


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 198/431 (45%), Positives = 290/431 (67%), Gaps = 5/431 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D++ +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE+  G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             +  +P+L++  ++  +D++T F + M  L    VP+V+ L  +L E++ HR +V+ RR
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNN-VPRVLNLKEMLNEYIKHRFDVITRR 360

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432
           ++F +   ++R  ILKG  IA  NID II +IR        +  ++ +++ T+ Q  +IL
Sbjct: 361 TAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSIL 420

Query: 433 NLRLRSLRKLE 443
           +++L+ L  LE
Sbjct: 421 DMKLQRLTGLE 431


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 196/665 (29%), Positives = 340/665 (51%), Gaps = 26/665 (3%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++ V   ++   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +M L  G   
Sbjct: 1   MDQFVIKQNITETLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLR- 58

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGNIDGDSAA--AY 129
            KSA IVG+   KL+PHGD ++Y+++VRL + +     P +  +GNFG +     A  A 
Sbjct: 59  TKSANIVGQ-TMKLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDMAYAAA 117

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+++++   +   ++EDAVDF D Y+    EPV+ P++FPN+L N   GIAVGMA+
Sbjct: 118 RYTEAKLSEICTEVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMAS 177

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +  S N++E+C A +A + N +     +LE+II PDFPTGG I+     + E    G+G 
Sbjct: 178 NFCSFNLKEVCNATIAYLKNEDA---DVLEHIIAPDFPTGGQIILDETEMREVLETGKGS 234

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           F+VRA++      +   CI + EIPY      +I+KI EL+ A +I  + D+RDE+    
Sbjct: 235 FKVRAKYHY---IKKENCIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLSG 291

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     RS DP++LM+ +F  + +E  F  N N+L  G  P+V+    I+KEW   R+
Sbjct: 292 LKLTIDLKRSTDPEMLMQKLFKSTPLEDSFSCNFNLLINGM-PKVLGFKEIIKEWCEFRQ 350

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTEN 426
           + + R+  F ++ +++R  +L GL    L+ID+ I I+R+ +K K   P +++ F ++E 
Sbjct: 351 QCVVRKYRFAIEKMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLMAHFEISEM 410

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q D +  ++LR L K    +   ELD L  +  ++  ++ + K+    I+ E++ +++ F
Sbjct: 411 QADYVAEIKLRHLNKQYILETLKELDELEKKIAELKDIIENPKKVKKVISDELKVIQKKF 470

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHF 545
                 G  R T             + +IE   + +  ++  +++ +   S+  S     
Sbjct: 471 ------GTERQTEVIKHTEVVKVKHEELIEDYNVKLFFTDHQYLKKITLVSLRSSGEQKL 524

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIV 603
           KE D++   + A     +LL +     Y L    +   +    G  +  L+DL   + I+
Sbjct: 525 KEDDTIIQEIEASNRSDLLLFTNKSNVYKLKLHEIEDTKASQFGVYLPNLLDLEEGEQIL 584

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662
                 D T  +    S G    V  +     T + K       +     +  V  + + 
Sbjct: 585 AIHSTTDYTGYIAFGFSTGKVAKVPVAAYETKTNRKKLIKAFYGKSPCVGIAFVEEEDIL 644

Query: 663 VVGEN 667
           ++   
Sbjct: 645 LLTRE 649


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 202/460 (43%), Positives = 282/460 (61%), Gaps = 40/460 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------- 416
           + F ++    R  IL+ L IA  NID II +IR    P                      
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 417 ------------------MVSRFSLTENQVDAILNLRLRS 438
                                ++ LTE Q  AIL+LRL+ 
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQK 465


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 207/721 (28%), Positives = 345/721 (47%), Gaps = 30/721 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            N   L    +    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL
Sbjct: 18  DNVEILSAGEIIETPITETLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGL 76

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDS 125
             GA   KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG      
Sbjct: 77  LKGAR-TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRD 134

Query: 126 AA--AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            A  A RYTEA++  V E + + +D+D VDF   Y+   +EP + P  FP +LAN T GI
Sbjct: 135 MAYAAARYTEAKLEPVCEELFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLGI 194

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMA++I S N++E+C A +AL+ + +     L E I  PDF  GG I+     +    
Sbjct: 195 AVGMASNICSFNLEELCNATIALMKDAKA---DLKEIIPAPDFVGGGTILYDAAEMKNVL 251

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG  RVRA+W      + + CI VT IP       +++KI EL+   +I  + D+RD
Sbjct: 252 ENGRGSVRVRAQWSY---DKTNNCIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMRD 308

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+  +   +     R  DPD LM  +F  + +E  F  N NVL  G+ P+V+ +  IL E
Sbjct: 309 ETDLNGLKLTIDLKRGQDPDKLMARLFKATPLEDSFACNFNVLIAGQ-PKVLGVRDILLE 367

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-- 421
           W+A R E + RR+ + +Q   +R+ +L+GL    L+ID+ I I+RN  +   V+ +    
Sbjct: 368 WIAFRAECVRRRTYYDLQGKQKRLHLLQGLKAILLDIDKAIEIVRNTAEEAEVVPNLMIG 427

Query: 422 -SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q + +  ++LR L +    +  +E++ L +  E +  +L    +    I  E+ 
Sbjct: 428 FGIDEVQAEYVAEIKLRHLNREYILKRTAEIEELESAIEDLQDVLKRPARINKIIMNELS 487

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           +V + + K      RR        A +A   +  I   P+ +  +  G+ + +   S+ +
Sbjct: 488 DVAKKYGKP-----RRCEILYEVPASEAEEPEQQIPDYPVHLFFTRDGYFKKITPQSLRM 542

Query: 541 SA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN 597
           S     K+GD +     +  +  +L  +   + Y   A +    +    G+ +   + + 
Sbjct: 543 SGEQKLKDGDEVLFTCESTNSVELLFFTNHHQVYKSHAYDFADSKASVLGDYVASSLGME 602

Query: 598 HNQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
             +  +   V  D    +L     G    V  S       + K     S + ++  +  +
Sbjct: 603 EGEVPLYMVVTPDYKGWMLFFFQNGKCAKVPLSSYETKQNRRKLLKAYSDKAELACMRYL 662

Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWID 713
             +  +A+   N +LL+     IPE S     GV + S K    + +    + EGL   +
Sbjct: 663 PEETELAIFTSNNRLLLAGSALIPEKSTRDTAGVNVVSLKKN--ARIARVTLSEGLELAE 720

Query: 714 S 714
           +
Sbjct: 721 A 721


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 205/699 (29%), Positives = 356/699 (50%), Gaps = 29/699 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 1   MTHKNLVEQNITETLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDSA--AA 128
             KS+ IVG+   KL+PHGD ++Y+++VR+ +      +P +  +GNFG         AA
Sbjct: 60  -TKSSNIVGQ-TMKLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMKFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ ++ E I + +D++ V+F D Y+    EPV+ P+ FP +L N   GIAVGMA
Sbjct: 118 PRYTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++I S N+ EIC+   ALID+  + +E    Y+  PDF +GG ++ S + I + Y+ GRG
Sbjct: 178 SNICSFNLVEICKTTSALIDDENVVLED---YLKAPDFSSGGQLIYSAKEIRDIYKNGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           GF+VRAR+      + + CI + EIPY      +I++I ELI   +I  + D+RDE+   
Sbjct: 235 GFKVRARYKY---DKENNCIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDLS 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     ++ DPD+LM  +F L+ ++  F  N N+L  G  P+VM +  IL EWL  R
Sbjct: 292 GLKLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILING-RPRVMGVRTILNEWLNFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPK--PVMVSRFSLTE 425
            E + R+ S+ ++    ++ +L GL    L+ID+ I IIR  E + K  P +++ F + E
Sbjct: 351 VECIKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMTGFGIDE 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D I  ++LR+L K        E +NL+ E  ++  +  +  +    I  ++ E+ + 
Sbjct: 411 IQADYIAEIKLRNLNKEYILNRVGETENLIKEIAELKDIHGNDNKVKKIIQKQLSEIAKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           F K       R T        +    +  IE   + V ++   +++ +   S+  +    
Sbjct: 471 FGKP------RRTEIISDEQVEEITTEHFIEDYNLKVFLTEHNYLKKIPLVSLRANPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            K+ D +   +  H    +L+ +     Y      +   +    GE +  L+ L++++ I
Sbjct: 525 LKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEIPDCKASSLGEYLTNLLGLDNDEKI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           +     ++    +L     G    +E S     T + K      S   +  ++ +T D  
Sbjct: 585 IYITATNNYEGYMLFFYENGKGAKIEMSGYATKTNRKKLANAYYSGSPLIRMIFITEDIE 644

Query: 661 VAVVGENRKLLIFSIDQIPE--MSRGKGVRLQSYKDGGI 697
           +  +    KLL+F+ + I        +GV++ + K G +
Sbjct: 645 LIAISSINKLLVFNTNSINPKTTKNSQGVQILTSKKGSL 683


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 431

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 465


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 195/710 (27%), Positives = 344/710 (48%), Gaps = 29/710 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLIKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS--AAA 128
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG         AA
Sbjct: 83  -TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA
Sbjct: 141 ARYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +I S N+ E+C   +AL+ + +  I   +     PDF  GG I+     + + +  GRG
Sbjct: 201 CNICSFNLAELCNTTIALMKDAKHDISTTM---PAPDFVGGGQILYDEAQMRDIFENGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRAR+       G   I +T+IP       +++KIAEL+ A +I  + D+RDE+  +
Sbjct: 258 SVKVRARYA---AVPGENMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLN 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  IL+EW A R
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILQEWTAFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
            E + RR+ + +   ++R+ +LKGL    ++ID+ I IIR  ++   V+ +      + E
Sbjct: 374 MECVRRRTYYDLHGKEKRLHLLKGLAAILMDIDKAIHIIRTTEEETEVVPNLMIGFGIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L +    +   E++ L A+   ++ +L    +    I  E+ +V + 
Sbjct: 434 VQADYVAEIKLRHLNREYILKRTGEIEQLEADIADLNDILAKPARIRKIIMKELADVAKK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-H 544
           + +      RR+        ++   ++  +   P+TV  +  G+++ +   S+  +    
Sbjct: 494 YGQP-----RRSEILYDLPEEEGGAEEEAVPDYPVTVFFTREGYLKKIPPQSLRTAGAHK 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            KEGD +   +        L  +   + Y +    L  G+    G  +   + ++  ++I
Sbjct: 549 LKEGDEIVRQVETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIYLPGRLGMDEGENI 608

Query: 603 VTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           +   +  D +  +L   + G    +  S       + K       +E +  +  +  +  
Sbjct: 609 LDMVITSDYSGYMLFFFAGGRCAKIPLSSYATKQNRRKLLKAYCDKEPLATLFFLPEETE 668

Query: 661 VAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSY-KDGGISDVICFKICE 707
           +A+     ++L+    QI        +GV + +  K+  I+ V+     E
Sbjct: 669 LAIRTSAGRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQTIASVVPADTLE 718


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE+++ V L+ ALEERYLAYALSTI  RA+PD+RDG KPVHRRI+HAM  + L+   A+ 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPL+ GQGNFGNIDGD+AAA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P  FPNLLANG++GIAVGMAT+IP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLE----------------------YIIGPDFPTGGI 231
           HNV E+C +AL LI++P+  +E+L+                        + GPDFPTGGI
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           +VE   +I+E+YR GRG FRVRARW  EE  RG+W IVVTEIPYQVQKSRLIEKIAEL++
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R  LNMNVLS G+V
Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P V+ L  +L+EWL HR+EVL RRS FR+  I+RR+EIL G LIAYLN+DE+I IIR ED
Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 436

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           +PK  ++  F LT+ Q ++ILN+RLRSLRKLEE+
Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 470


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/710 (28%), Positives = 342/710 (48%), Gaps = 29/710 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS--AAA 128
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG         AA
Sbjct: 83  -TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA
Sbjct: 141 ARYTEAKLEGVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +I S N+ E+C   +AL+ +    I   +     PDF  GG I+     + E Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDISTTM---PAPDFVGGGQILYDEAQMREIYENGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRAR+ V     G   I VT+IP       +++KIAEL+ A ++  + D+RDE+  +
Sbjct: 258 SVKVRARYSV---VPGENMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMRDETDLN 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  ILKEW A R
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSANFNILVSGQ-PRVMGVREILKEWTAFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
            E + RR+ + +   ++R+ +LKGL    L+ID+ I IIR  ++   V+ +      + E
Sbjct: 374 VECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIKIIRTTEEETEVVPNLMIGFGIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L +    +  SE++ L  +   ++ +L    +    I  E+ +V + 
Sbjct: 434 VQADYVAEIKLRHLNREYILKRTSEIEQLEKDIADLNDILAKPARIRRIIINELNDVAKK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-H 544
           + +      RR+        D+   ++      P+TV  +  G+ + +    +  +    
Sbjct: 494 YGQP-----RRSEILYDLPEDENGSEEEEAPDYPVTVFFTREGYFKKIPPQGLRTAGAHK 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            KEGD +   +        L  +   + Y +    L  G+    G  I   + ++  +++
Sbjct: 549 LKEGDEIVQQIETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGENV 608

Query: 603 VTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-KLVVKVTGDH 660
           ++  +  D +  +L   + G    +  S       + K       +E + KL        
Sbjct: 609 LSMVITSDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYCDKEPLAKLFFLPEETE 668

Query: 661 VAVVGENRKLLIFSIDQIPEMSR--GKGVRLQSY-KDGGISDVICFKICE 707
           +A+     ++L+    QI   +    +GV + +  K+  I+ V+     E
Sbjct: 669 LAIRTSASRMLLVGTAQIAAKATRDSQGVAVVTLKKNQTIASVVPADTLE 718


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 197/434 (45%), Positives = 276/434 (63%), Gaps = 6/434 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKLE 443
           AIL LRL  L  LE
Sbjct: 423 AILELRLYQLTGLE 436


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/465 (44%), Positives = 315/465 (67%), Gaps = 8/465 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T IP+QV  S+L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERR 461


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/472 (43%), Positives = 314/472 (66%), Gaps = 8/472 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+EI +A + LIDNP+  +  +++Y+ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             RR  + RR   R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            Q DAIL+ +LR L KLEE +I+ E D L  E+EK++ LL S ++    +  
Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLEK 468


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 194/706 (27%), Positives = 349/706 (49%), Gaps = 29/706 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL-DFGAAFKK 74
           +V +  +   L++ Y+ YA+S I  RA+P++ DGFKP HR++++ M + GL        K
Sbjct: 25  SVVSEKIADTLKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRGLLSPDKERSK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAA--YRY 131
           SA +VGE   KL+PHGDQ++Y++LVR+ +      +P I  +GNFG            RY
Sbjct: 84  SANVVGE-TMKLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYSSKMHFAAPRY 142

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE ++ ++   + + +D++ VDF   Y+    EP + P+ FP +L N  +GIAV MA+++
Sbjct: 143 TEVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNTGIAVSMASNV 202

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
              N++E+CE  +AL+ +P      +L  + GPDFP GG ++     + + Y  GRG  +
Sbjct: 203 CPFNLEEVCETTIALMKDPNH---DILSTLKGPDFPGGGFMLYDEAELNKVYETGRGSIK 259

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR+++      + + C+ +TEIPY      +I+KI EL+ A +I  +  IRDE+  D   
Sbjct: 260 VRSKYSY---DKAANCLEITEIPYTTTVEAIIDKIIELVKAGKIREVSYIRDETDIDGLK 316

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +     R+ DPD LM+ ++ L+ ++  +P N N+L  G  P+VM +  IL EW A R E 
Sbjct: 317 IAIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILIAG-TPKVMGVREILTEWTAFREEC 375

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428
           + RR+   +     ++ +L+ L    L+ID+ I IIR   NE    P ++  F + E Q 
Sbjct: 376 IQRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLMIGFGIDEIQA 435

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +  ++LR++ K    +   E+D L  + E+++ +L   K+    I  E+R+V + ++K
Sbjct: 436 EFVAEIKLRNINKQYILRRVEEVDQLKKDIEEMEDILRDKKKIRKIIINELRDVIKNYAK 495

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-HFKE 547
                  R T        +   +       P+ + +S  G+ + +   S+ +S+    KE
Sbjct: 496 P------RKTMFYYQSDIEEEEEIDDTPDYPVNLFVSKSGYFKKITPQSLRMSSEHKLKE 549

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTA 605
           GD +  +  A     ++  S   +AY   A      +    G+ +   +  + N+++VT 
Sbjct: 550 GDYISQSFEATNKTDLIFFSDKAQAYKSKASAFDDTKASVMGDYVPAKLSFDENENLVTM 609

Query: 606 FV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663
               D +  ++     G A  V        T + K     S +  +   + V  D  + +
Sbjct: 610 LPTTDYSGYIVFFFENGKAAKVPVKSYETKTNRKKLAKAYSEKSPLIAALFVGEDCDILL 669

Query: 664 VGENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKICE 707
              +   L+F+   I P+ +R  +GV++ + +   +         E
Sbjct: 670 RSSSGHALVFNTGMILPKSTRDSQGVQVMTLRKKALLASAVIITDE 715


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 205/734 (27%), Positives = 350/734 (47%), Gaps = 43/734 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +  +    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSKSRLIEQKIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGR 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDSAAA-- 128
             KSA +VG+   KL+PHGD ++Y+++VRL +      +P +  +GNFG           
Sbjct: 60  -TKSANVVGQ-TMKLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDMHFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++ E + + +D+DAVDF D Y+    EP + P  FPN+L +   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++I S N+ E+CE A+  I+N  I   ++ +Y+  PDF +GG ++   + I E Y  GRG
Sbjct: 178 SNICSFNLNEVCETAIQFINNENI---EVSDYLKAPDFTSGGQLIYKEKDIKEIYNTGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+VR ++      + + CI + EIPY      +I+ I EL+   +I  + D+RDE+  D
Sbjct: 235 SFKVRGKYRY---DKENNCIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDLD 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V     R+ DPD LM  ++ L+ +E  F  N N+L  G  P+V+ + GIL  W+  R
Sbjct: 292 GLKVTIDIRRNTDPDALMNKLYKLTPLEDSFGCNFNLLING-RPKVLGIKGILANWIEFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            + + R++ F +     R+ +L GL    L+ID+ I +IR  ++     P ++  F +  
Sbjct: 351 VDCIKRQTLFDINKKSDRLHLLVGLKKILLDIDKAIRLIRETEEDAMVIPNLMDGFGVDH 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + I  ++LR+L K       SE+D L  E  ++  +  + K+    I  ++ EV + 
Sbjct: 411 VQAEFIAEIKLRNLNKEYILDKVSEIDKLEKEIAELKDIYGNDKKIKKIIVKQLGEVSKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           + K       R T        +   Q+  IE   + + +++  +++ +   S+  S    
Sbjct: 471 YGKP------RRTDILHEEHVEEITQEHFIEDYNLKIFLTDHNYLKKIPLTSLRTSPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            K+ DS+   +  H    +LL S     Y +    +        G+ +  L+ L  ++ I
Sbjct: 525 LKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIYEIDDCKASSLGDYLTNLLGLEADERI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           +     D     ++     G    ++       T + K     S   K+  +  +T D  
Sbjct: 585 INIVATDDYKGYMIFAFENGKVAKIDLESYATKTNRKKLANAYSDLSKIIYMQYITEDEE 644

Query: 662 AVV-GENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V     +K+LIFS   I   S    +GV++   K G              + + +  R 
Sbjct: 645 LVAFSSLKKVLIFSTSNINPKSTRDSQGVQVLKEKKG--------------SVMTTVKRL 690

Query: 719 YNRSENDLLGWLGK 732
              S  DL  +  K
Sbjct: 691 SEVSFKDLDYYRTK 704


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/433 (45%), Positives = 275/433 (63%), Gaps = 6/433 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRKL 442
           AIL LRL  L  L
Sbjct: 423 AILELRLYQLTGL 435


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 195/702 (27%), Positives = 349/702 (49%), Gaps = 29/702 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V+   +   L E Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL  GA   KSA
Sbjct: 27  VENQPITDTLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
            IVG+   KL+PHGD ++Y+++VRLA+      +P +  +GNFG       +    RYTE
Sbjct: 85  NIVGQ-TMKLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDMSFAASRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++  +   I   +D D VDF   Y+   +EPV+ P++FP +L N   GIAV MA++I S
Sbjct: 144 AKLDPICAEIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNICS 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+CE A AL+ N E     ++  + GPDFP GG I++    +   Y  GRG  +VR
Sbjct: 204 FNLSEVCETAAALMKNLEH---DIVSTLKGPDFPGGGFILQDENELRRIYATGRGSVKVR 260

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           +++      + + CI VTEIP       +I+KI E +   ++  + D+RDES      + 
Sbjct: 261 SKYIY---DKTANCIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKIT 317

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R  D + +M+ +F ++ ++  F  N N+L  G +P+VM +  IL++W   R   + 
Sbjct: 318 IDLKRGQDSEAVMKKLFRITPLQDVFSCNFNILV-GGMPKVMGVAEILEQWTDFRITCVK 376

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPK--PVMVSRFSLTENQVDA 430
           R++ F +     ++ +L GL    L+ID+ I IIR  ED  +  P ++  F + E Q + 
Sbjct: 377 RKTKFELARKKEKLHLLTGLKKILLDIDKAIKIIRETEDDAEVVPNLMIGFGIDETQAEY 436

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           + +++LR++ K    +   E+D+L  E   ++ +L+S ++    I  E+ ++ + + K  
Sbjct: 437 VADIKLRNINKGYILKRIEEIDSLKEEIADMEDILSSERRVKQIIISELGDIAKKYGKP- 495

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGD 549
                R T       D+    +  I   P+ +  +  G+ + +   S+ +S     KE D
Sbjct: 496 -----RKTMFIYGTEDEENEAEEEIPDYPVNLFFTREGYFKKITPQSLRMSGEQKLKEND 550

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607
            +           +L  +   + Y   A +   G+    G+ + + ++L+ ++ I+    
Sbjct: 551 EIIETYDGSNRAELLFFTDKFQVYKARACDFEDGKASVMGDYLPVKLELDPDERIIKMIA 610

Query: 608 YDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
            +  +  L++    G    V  +     TR+ K     +    +  +  + GD    +  
Sbjct: 611 AEDYSGTLVMFFENGKCAKVPMASFETKTRRKKLANAYNDGSPLVSMTLIDGDCEFMLSS 670

Query: 666 ENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKI 705
           E  K++IF+   I P+ +R  +GV++       +   + +K 
Sbjct: 671 EAGKVMIFNTVLILPKAARDTQGVQVMRLTRAKLRSAVKYKD 712


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 212/738 (28%), Positives = 368/738 (49%), Gaps = 78/738 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+ ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MNKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +AL+ N +IS +KL   I GPDFPTGG ++ S   I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSHA-IKELYETGKGSI 239

Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV           I++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L  G+ P+ + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGK-PKQLNLKEYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422
             R E + +R+ + ++    ++EI +GL  A  NI ++I II    N +K +  ++  F 
Sbjct: 359 EFREETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIENFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK---------------------- 460
           L+E Q +++L++ L+ L  LE+ +I  E+ +L  +K                        
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNYFQKLLNERGLLLELLVEELLIL 478

Query: 461 ------------IDSLLNSGKQ--QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                       I ++  + +     NQI  +    K        L  +R       ++ 
Sbjct: 479 KKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILGNYKKSF 538

Query: 507 KATLQQAMIEKEPITVVISNR-----GWIRSLKSHSVDLSALHFKE---GDSLKIALHAH 558
           +   +    +     +    +     G   + K  ++D  +   K+    + +   +HA+
Sbjct: 539 EVVNKIIDNKNIQKFICNIEKNIKLIGITNTGKVFNIDWESSINKDYKLDNKILGNIHAN 598

Query: 559 -----------TTDRILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
                      T + + +L++DG+   +      + S R        +  L +N   + +
Sbjct: 599 EIINFHSIKKETKNYLCILNSDGRFKKVLFDEDMIKSNRSF-----TITKLKNNLKTIDS 653

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
           F+ + +  L++++S G  F    S       +   +G    K+   EK+        G++
Sbjct: 654 FISNESKYLMILTSIGRIFKFNLSNKFLTPTSKQSQGLIITKLLPTEKIVSCCTFHDGEN 713

Query: 661 VAVVGENRKLLIFSIDQI 678
           + ++ +  K+   + ++I
Sbjct: 714 IFLISKQGKIFCINSNEI 731


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 195/432 (45%), Positives = 274/432 (63%), Gaps = 6/432 (1%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG++ +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMAT+IP 
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII    E I  +Y  GRG  R+R
Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIIC-GTEGIRSTYYTGRGKLRLR 243

Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           AR  VEE   +    I++TE+PY V KSRLIE+IAELI  K +  + D+RDES +D   V
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    +    ++++  ++  +D++  F  NM  L    +P+ M +  ++  W+ HR +V+
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLAL-DKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429
            RR+ + +   + R  IL+G L A   +DE++  IR   N++  K  +V  FS +E Q  
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQAL 422

Query: 430 AILNLRLRSLRK 441
           AIL LRL  L  
Sbjct: 423 AILELRLYQLTG 434


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/710 (28%), Positives = 341/710 (48%), Gaps = 29/710 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS--AAA 128
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG         AA
Sbjct: 83  -TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA
Sbjct: 141 ARYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +I S N+ E+C   +AL+ +    I   +     PDF  GG IV     + E Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRAR+       G   I VT+IP       +++KIAEL+   ++  + D+RDE+  +
Sbjct: 258 SVKVRARYN---AVPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLN 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  ILKEW A R
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILKEWTAFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
            E + RR+ + +   ++R+ +L+GL    L+ID+ I IIR  ++   V+ +      + E
Sbjct: 374 VECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V + 
Sbjct: 434 VQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAKK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-H 544
           + K      R +        + A  ++  +   P+TV  +  G+ + +   S+  +    
Sbjct: 494 YGKP-----RCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAHK 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            KEGD +   L        L  +   + Y +    L  G+    G  I   + ++  +++
Sbjct: 549 LKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGENV 608

Query: 603 VT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           ++     D +  +L   + G    +  S       + K     S +E + +++    +  
Sbjct: 609 LSMVITGDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYSDKEPLAMMLYQPEETE 668

Query: 661 VAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSY-KDGGISDVICFKICE 707
           +A+     ++L+    QI        +GV + +  K+  I+ V+     E
Sbjct: 669 LAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQTIASVVPADTLE 718


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/710 (28%), Positives = 341/710 (48%), Gaps = 29/710 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M EMGL  GA 
Sbjct: 24  LNAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR 82

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS--AAA 128
             KSA IVG  +  L+PHGD ++YD++VR+ +       P +  +GNFG         AA
Sbjct: 83  -TKSANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAA 140

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++  V E + + +D++ VDF   Y+   +EP + P  FP +LAN T GIAVGMA
Sbjct: 141 ARYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +I S N+ E+C   +AL+ +    I   +     PDF  GG IV     + E Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRG 257

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRAR+       G   I VT+IP       +++KIAEL+   ++  + D+RDE+  +
Sbjct: 258 SVKVRARYN---AVPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLN 314

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R +D D LM  +F  + +E  F  N N+L  G+ P+VM +  ILKEW A R
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQ-PRVMGVREILKEWTAFR 373

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTE 425
            E + RR+ + +   ++R+ +L+GL    L+ID+ I IIR  ++   V+ +      + E
Sbjct: 374 IECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMIGFGIDE 433

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q D +  ++LR L +    +   E++ L  +   ++ +L    +    I  E+ +V + 
Sbjct: 434 VQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDVLAKPARIRRIIINELNDVAKK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-H 544
           + K      R +        + A  ++  +   P+TV  +  G+ + +   S+  +    
Sbjct: 494 YGKP-----RCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPPQSLRTAGAHK 548

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602
            KEGD +   L        L  +   + Y +    L  G+    G  I   + ++  +++
Sbjct: 549 LKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDEGENV 608

Query: 603 VT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           ++     D +  +L   + G    +  S       + K     S +E + +++    +  
Sbjct: 609 LSMVITGDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYSDKEPLAMMLYQPEETE 668

Query: 661 VAVVGENRKLLIFSIDQI--PEMSRGKGVRLQSY-KDGGISDVICFKICE 707
           +A+     ++L+    QI        +GV + +  K+  I+ V+     E
Sbjct: 669 LAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQTIASVVPADTLE 718


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/402 (43%), Positives = 266/402 (66%), Gaps = 3/402 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   +   YL Y++S I  RA+PD+RDG KPVHRR+++AM ++G     A+KKSA
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD SVY+++VRLAQ +  RY L+ GQGNFG++DGDS AA RYTE RM
Sbjct: 84  RVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++AE +L  +D++ VDF   Y++  +EP+V P+KFPNLL NG++GIAVGM T+IP HN+
Sbjct: 144 DRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNM 203

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  L LID+P+ ++  L+++I GPDFPT    +  RE I  +Y  GRG   +RAR 
Sbjct: 204 GEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAA-TITGREGIARAYETGRGQITIRART 262

Query: 257 CVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            +E   +G    I++TEIPYQV K+RLIEKIA+L+  K++  + DIRDES      +   
Sbjct: 263 EIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIE 322

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R     +++ ++F ++ +ET F   M  +  G  P+ + L  +L  +++HRR+V+ RR
Sbjct: 323 LKRDAISGVVLNNLFSMTPLETTFGAVMLAI-DGGQPRTLNLKELLDRFISHRRDVITRR 381

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           + + ++    R+ I++GLL+A   ID ++++IR    P    
Sbjct: 382 TRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEAR 423


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 165/519 (31%), Positives = 302/519 (58%), Gaps = 15/519 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + + 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTTYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            +E Q +AI++L+L  L   + ++++S   +L  +   ++ +L    +    +  E+ E+
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKILGDEAELVAVLKAELSEI 474

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           K+ +         R T  +   A+     + ++  E + 
Sbjct: 475 KKKYKTP------RRTEVQAEIAEIKIDTEVLVANEDVI 507


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 144/579 (24%), Positives = 239/579 (41%), Gaps = 87/579 (15%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           +R++  +E    G   I+V+EIPYQV K+RLIEKIAEL+  K++  +  +RDES +D   
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           ++    R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRREV
Sbjct: 61  IVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREV 119

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416
           + RR+ F ++    R  IL+GL +A  NIDEII +IR+   P                  
Sbjct: 120 VTRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVA 179

Query: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                                    ++ LTE Q  AIL+LRL  L  LE  +I  E   L
Sbjct: 180 AMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 239

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           L E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +
Sbjct: 240 LEEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEEL 291

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I +E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL 
Sbjct: 292 IAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLF 351

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           ST GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G
Sbjct: 352 STRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSKDKFIFMATGDG 411

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ--- 677
                   +       G   L +  E+ +  V    G+  + +  +  K++ F   +   
Sbjct: 412 TVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETA 471

Query: 678 ----------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
                                 +  M R   GVR     DG     +     EG   +  
Sbjct: 472 VVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTV 530

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
               Y +  +        RG  G +  K   R+G  + +
Sbjct: 531 TENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 569



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      K+    + +  G ++              L AL+ ++ DSL   
Sbjct: 384 EENERITAILPVTEFSKDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 443

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 444 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 503

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 504 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 563

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 564 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 621

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 622 IDEIEESELPEGEEALVEND 641


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 150/538 (27%), Positives = 252/538 (46%), Gaps = 59/538 (10%)

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +A IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR GRG   VRAR  VE   +
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRTGRGKVYVRARATVETNEK 59

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S ++   +     R    +
Sbjct: 60  GREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGE 119

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
           +++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++  
Sbjct: 120 VVLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKA 178

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------------- 416
             R  IL+GL +A  NIDE+IAIIRN    +                             
Sbjct: 179 RERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDE 238

Query: 417 -------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                     ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S +
Sbjct: 239 LEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAE 298

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+ EVK  F              E++ A      + +I +E + V +S+ G+
Sbjct: 299 RLMEVIREELEEVKAQFGDD--------RLTEITAASGDIDLEDLIAQEDVVVTLSHEGY 350

Query: 530 IRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           ++          +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L 
Sbjct: 351 VKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLP 410

Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             S    G  I  ++ L  N+ I        Y+    +++ ++ G    +  +E      
Sbjct: 411 QASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRS 470

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
            G   L +  E+++  V    G + + +     +++ F+ + +  M R   GVR    
Sbjct: 471 NGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKL 528


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 198/693 (28%), Positives = 343/693 (49%), Gaps = 29/693 (4%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +V    +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ M +MGL       KS
Sbjct: 38  SVVEQEIDHTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLNSGR-TKS 95

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAA--AYRYT 132
           A IVG+   KL+PHG+ ++YD++VRL++ +    +P +  +GNFG       A  A RYT
Sbjct: 96  ANIVGQ-TMKLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSRDMAWAASRYT 154

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA++  +A+ + + +D+D VDF D Y+    EP + P+ FP +L N  +GIAVGMA+SI 
Sbjct: 155 EAKLDAIAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTGIAVGMASSIC 214

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             N++E+CE  + LI +P+     ++  ++ PDFP GG I+  R ++ + Y  GRGG +V
Sbjct: 215 PFNLKEVCETTIGLIRDPDF---DVMSTLLAPDFPGGGQIICDRNALKQVYATGRGGIKV 271

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RAR+  ++      CI VT IP       +IEKI EL+   ++  + DIRDE+  D   +
Sbjct: 272 RARYSYDQSAN---CIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIRDETGLDGLKI 328

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                RS+DP+ LM  +F ++ +E  F  N NVL  G VP+V+ +  +L EW+A R E +
Sbjct: 329 TIDLKRSVDPEKLMLKLFRMTPLEDTFSCNFNVLIAG-VPRVLGIRELLGEWIAFRIECV 387

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVD 429
            RR+ F +Q    ++ +LKGL    L+ID+ + I+R  ++   V+ +      + E Q +
Sbjct: 388 RRRTYFDLQKKKDKLHLLKGLKRILLDIDKAVRIVRETEEESEVVPNLMIGFGIDEIQAE 447

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  ++LR L +    +   E + L  E  ++ ++++S  +    I  E+ +V + +   
Sbjct: 448 FVAEIKLRHLNREYILKRTQETEQLETEIAELQAVMDSKSKVKGIIVSELNDVIKKY--- 504

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEG 548
              GR R +        +    +  I   P+T+  +  G+ + +   S+ +S     KE 
Sbjct: 505 ---GRPRKSMLVYPGEIQEYEPEDDIPDYPVTLFFTKEGYFKKITPQSLRMSGEQKLKEE 561

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606
           DS+   + A     +L  +   + Y   A      +    G+ +   +  +  +  V   
Sbjct: 562 DSIVQTVEATNNTELLFFTDRCQVYKTRASEFADTKASVLGDFVAAKLGFDEGESAVAMI 621

Query: 607 V-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV-AVV 664
           V  D    LL     G    V        T + +     S +  +  V  +  D    + 
Sbjct: 622 VTTDYKGCLLFFFENGKLAKVPLDSYATKTNRKRLANAYSEKSPLCRVYHIQEDQEFLLT 681

Query: 665 GENRKLLIFSIDQI--PEMSRGKGVRLQSYKDG 695
             + ++L+     +        +GV + + + G
Sbjct: 682 SSSGRMLLVHTGAVAEKATRNTQGVAVMTQRKG 714


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 216/738 (29%), Positives = 367/738 (49%), Gaps = 78/738 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRII AM E+GL     
Sbjct: 1   MDKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LV+L Q F  +YP + G GNFG+ID D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V+F + ++    EP V P++ P LL NG++GIAVGMAT+
Sbjct: 121 TETRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  + L+ N +IS +KL   I GPDFPTGG ++ SR  I E Y+ G+G  
Sbjct: 181 IPPHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRA-IEELYQTGKGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     EEV  G        I++ E+PYQ+ K+  IEK+AEL+ A +I  + DIRDES
Sbjct: 240 TIRGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L  G+  Q + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQ-LNLKKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R E + +R+ + ++    ++EI +GL  A  +I ++IAII   +   + +  +V +F 
Sbjct: 359 EFREETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------------------- 462
           L+E Q +++L++ L+ L  LE+ QI +E+ NL  +K                        
Sbjct: 419 LSEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKNYFQKLLNERELLLKLLIEELLIL 478

Query: 463 ----------SLLNS------GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                      ++ +       +   NQI  +    K        L  +R       ++ 
Sbjct: 479 KKKYNVIRKTKIIKNLNQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILSNYKKSF 538

Query: 507 KATLQQAMIEKEPITVV----------ISNRGWIRSL-------KSHSVDLSALHFKEGD 549
           +   +    +     +           I+N G + ++       K + +D   L      
Sbjct: 539 EGVNKIIDNKNIQKFICNIEKNTKLIGITNTGRVFNIDWESSINKDYKLDNKILGNIHPS 598

Query: 550 SLK--IALHAHTTDRILLLSTDGKAYTL--PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
            +    ++   T + + +L++DG+   +      + S R        +  L +N   V +
Sbjct: 599 EIINFHSIKKETRNYLCILNSDGRFKKVLFDKDMIKSNRSF-----TITKLKNNLKTVDS 653

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESE----IIANTRKGKTFLKVSSEEKMKLVVKV-TGDH 660
           F+ + +  L++++S G  F    S       +   KG    K+   EK+        G++
Sbjct: 654 FISNESKNLIILTSIGRIFKFNLSNKFLTATSKQSKGLIIAKLLPTEKIVSCCTFHDGEN 713

Query: 661 VAVVGENRKLLIFSIDQI 678
           + ++ +  K+   + ++I
Sbjct: 714 IFLISKQGKIFCINSNEI 731


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 346/706 (49%), Gaps = 31/706 (4%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   LE+ Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  G+   KSA +VG+
Sbjct: 12  ISDTLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSR-TKSANVVGQ 69

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSA--AAYRYTEARMTQ 138
              KL+PHGD ++Y+++VRL +      +P +  +GNFG         AA RYTE ++ +
Sbjct: 70  -TMKLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDMQFAASRYTEVKLDK 128

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +   + + +D+D V F   Y+    EP + P+ FP++L N   GIAVGMA++I   N++E
Sbjct: 129 ICTELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLRE 188

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +C A +A I NP+  IEK   YI GPDFP GG  +  RE + + +  GRG  R+RAR+ V
Sbjct: 189 VCSATIAYIKNPDCVIEK---YIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYRV 245

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
                 +  I + EIPY      +++ +AEL+ A +   + D+RDE+  +   +     R
Sbjct: 246 ---DLKNRLIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELKR 302

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
           + +P+ LM  +F  + ++  F  N NVL  G  P+V+ +  ++ EWL  RR  + R ++F
Sbjct: 303 AAEPEALMNRLFKQTSLQANFACNFNVLIDG-RPRVLGVKQLIGEWLNFRRTCVRRETAF 361

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            +Q    ++ +L+GL    L+ID+ I IIR   NE    P +   F++   Q + I  ++
Sbjct: 362 DLQEKQAKLHLLEGLNTIMLDIDKAIRIIRETENETDVIPNLCRGFAIDAVQAEYIAEIK 421

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           LR+L +    +  ++   L  E  ++ + L S      +I   +++V E + +      R
Sbjct: 422 LRNLNREYLLKRTADRSELTEEIAQLQNRLASTSLLDAEIIRTLQQVAEKYGQ-----DR 476

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIA 554
           RT   +          + +IE   +   ++  G+++ L   S+  +  L  K+ D +   
Sbjct: 477 RTVLIDAGEI-TEITGEDLIEDYRLKYFLTAHGYLKKLPLTSLRSAGELKIKDEDEIISE 535

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTA-FVYDST 611
           + A   D I++ +     Y +    +   +    GE +  L+D    + ++      +  
Sbjct: 536 IEAGNRDEIMVFTDQANVYKISGHEIKDCKPSELGEYLPGLLDFAPEEKVIYLHVPGEYV 595

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKL 670
              +   + G    V  S     T++ K     S +  +  +          ++    K+
Sbjct: 596 GDFMFAFANGKVARVPVSAYKTKTKRRKLVAAYSDKSPLVGIEFAPENKSYVLISNLSKV 655

Query: 671 LIFSIDQIP--EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
           LIF  +QIP       +GV++ S K   +  V  F   E     DS
Sbjct: 656 LIFDSEQIPAKVTRNNQGVQVMSAKRNSV--VNKFSTPEAAGIQDS 699


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 204/734 (27%), Positives = 356/734 (48%), Gaps = 43/734 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSA--AA 128
             KSA +VG+   KL+PHGD ++Y++LVRL +       P +  +GNFG         AA
Sbjct: 60  -TKSANVVGQ-TMKLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           +SI S N+ E+C AA+  I +       L+  +  PDFPTGG ++ +   + E Y  GRG
Sbjct: 178 SSICSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  +
Sbjct: 235 TFKLRAKYRY---DKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLN 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R+ DPD LM  ++ L+ +E  F  N N+L  G  P VM + GILKEW+  R
Sbjct: 292 GLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILING-RPMVMGVRGILKEWVNFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F + +
Sbjct: 351 MDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMEGFGIDQ 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ + 
Sbjct: 411 AQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           + +       R T   +    +    + +IE   + + ++ + +++ +   S+  S    
Sbjct: 471 YGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KEGD +   L  H    +LL S     Y +    +        GE +  ++ L   ++I
Sbjct: 525 LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           +     D     ++     G    +        T + K     +   ++  +  +  D  
Sbjct: 585 IHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDEE 644

Query: 662 AVV-GENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V      K+LIF+   I P+ +R  +GV++   K G              + +    + 
Sbjct: 645 LVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKG--------------SVMTHIKKI 690

Query: 719 YNRSENDLLGWLGK 732
              S  D   +  K
Sbjct: 691 SEVSFTDPDYYRTK 704


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 193/466 (41%), Positives = 296/466 (63%), Gaps = 14/466 (3%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG++DGD+AAA R
Sbjct: 2   PYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAMR 61

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT+V+E IL+ +D+D V+F   Y++   EP V P++ P LL NG+ GIAVGMAT 
Sbjct: 62  YTEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMATK 121

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN++E+ +A L ++DN   + E L+++I GPDFPTGG I   R  I+++Y+ GRG  
Sbjct: 122 IPPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIF-GRRGIIDAYKTGRGRV 180

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA+  +E  G+    IV+ E+PYQV KSRLIE+IA L   K++  + ++RDES  +  
Sbjct: 181 KIRAKHHIETKGK-KEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREGI 239

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    +    ++++ +++  + +ET F + +  +     P+V  L  +L  +L+HR+ 
Sbjct: 240 RVVIELKKDAMSEIVLNNLYKSTPLETTFGIILLAVHNKE-PKVFNLPELLNLFLSHRKT 298

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427
           V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+ + K  +  RF L+  Q
Sbjct: 299 VIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDRFGLSIIQ 358

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             AIL++RL  L  L+  ++++E   LLA   +++S+L S  +    I  E+ E+KE +S
Sbjct: 359 SQAILDMRLGRLTGLQRDKLEAEYQELLALIAELESILKSEDKLNEIIKEEVAEIKEKYS 418

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
                  RRT   E+  +      + +I  EP+ V I++ G+++ +
Sbjct: 419 DE-----RRT---EIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 456


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 204/734 (27%), Positives = 356/734 (48%), Gaps = 43/734 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +   N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MSTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSA--AA 128
             KSA +VG+   KL+PHGD ++Y++LVRL +       P +  +GNFG         AA
Sbjct: 60  -TKSANVVGQ-TMKLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           +SI S N+ E+C AA+  I +       L+  +  PDFPTGG ++ +   + E Y  GRG
Sbjct: 178 SSICSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  +
Sbjct: 235 TFKLRAKYRY---DKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLN 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R+ DPD LM  ++ L+ +E  F  N N+L  G  P VM + GILKEW+  R
Sbjct: 292 GLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILING-RPMVMGVRGILKEWVNFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F + +
Sbjct: 351 MDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGFGIDQ 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ + 
Sbjct: 411 AQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           + +       R T   +    +    + +IE   + + ++ + +++ +   S+  S    
Sbjct: 471 YGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KEGD +   L  H    +LL S     Y +    +        GE +  ++ L   ++I
Sbjct: 525 LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           +     D     ++     G    +        T + K     +   ++  +  +  D  
Sbjct: 585 IHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDEE 644

Query: 662 AVV-GENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V      K+LIF+   I P+ +R  +GV++   K G              + +    + 
Sbjct: 645 LVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKG--------------SVMTHIKKI 690

Query: 719 YNRSENDLLGWLGK 732
              S  D   +  K
Sbjct: 691 SEVSFTDPDYYRTK 704


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/497 (35%), Positives = 299/497 (60%), Gaps = 11/497 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E ++ +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F
Sbjct: 24  VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 83

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 84  RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 143

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++ +AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 144 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 203

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTG  I++  + I ++Y  G+G   V
Sbjct: 204 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTG-GIIQGIDGIKKAYESGKGRIIV 262

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   E +  G   +++TEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 322

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  +L H+ EV+
Sbjct: 323 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDG-RPKLMGIRQIIDSYLNHQIEVV 381

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429
             R+ F +   ++R+ I++GL+ A   +D++I +IR+       K  ++  +  TE Q +
Sbjct: 382 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 441

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           AI+ L+L  L   +   ++ E   L A  +++  +L++     N I  E+ E+K+ F   
Sbjct: 442 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFK-- 499

Query: 490 TDLGRRRTTFCEVSRAD 506
                 R +  E    +
Sbjct: 500 ----SERLSLIEAEIEE 512


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 204/734 (27%), Positives = 357/734 (48%), Gaps = 43/734 (5%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           ++  N+    +   LE+ Y+ YA+S I  RAIP++ DG KP HR++++ M +MGL  G  
Sbjct: 1   MLTNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSA--AA 128
             KSA +VG+   KL+PHGD ++Y++LVRL +       P +  +GNFG         AA
Sbjct: 60  -TKSANVVGQ-TMKLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE ++ ++ E + + +D+D VDF D Y+    EP + P+ FP +L N   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           +SI S N+ E+C AA+  I +       L+  +  PDFPTGG ++ +   + E Y  GRG
Sbjct: 178 SSICSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F++RA++      + + CI + EIPY      +I+ IA+L+ + +I  + D+RDE+  +
Sbjct: 235 TFKLRAKYRY---DKANSCIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLN 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     R+ DPD LM  ++ L+ +E  F  N N+L  G  P VM + GILKEW+  R
Sbjct: 292 GLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILING-RPMVMGVRGILKEWVNFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTE 425
            + + R++ + +    +++ IL GL    L+ID+ I IIRN ++     P ++  F + +
Sbjct: 351 MDCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMKGFGIDQ 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + +  ++LR+L K    +  SE+++L  E  +++ L  S K+    I  ++ E+ + 
Sbjct: 411 AQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNELYGSEKKIKKLIIKQLEEIAKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           + +       R T   +    +    + +IE   + + ++ + +++ +   S+  S    
Sbjct: 471 YGQP------RRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPLTSLRTSPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602
            KEGD +   L  H    +LL S     Y +    +        GE +  ++ L   ++I
Sbjct: 525 LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           +     D     ++     G    +        T + K     +   ++  +  +  D  
Sbjct: 585 IHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKLANAYNGLSRLVYIGHILEDEE 644

Query: 662 AVV-GENRKLLIFSIDQI-PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718
            V      K+LIF+   I P+ +R  +GV++   K G              + +    + 
Sbjct: 645 LVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKG--------------SVMTHIKKI 690

Query: 719 YNRSENDLLGWLGK 732
              S  D   +  K
Sbjct: 691 SEVSFTDPDYYRTK 704


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/410 (39%), Positives = 253/410 (61%), Gaps = 7/410 (1%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D          + ++ V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM 
Sbjct: 2   TDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMY 61

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+  
Sbjct: 62  DSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPG 121

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D  AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ G
Sbjct: 122 NDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGG 181

Query: 183 IAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRES 238
           IAVGMAT+IP HN+ E+ EA    ++N     E + E ++E + GPDFPT G+IV   + 
Sbjct: 182 IAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIV-GTQG 240

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I ++Y+ GRG  ++R    +EE  RG   IV+TE+PYQV     I  IAE +   ++  +
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 299 EDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +I D+ S      ++    R     +++ +++  + ++T F  NM  +  G VP+ + L
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRL 359

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           D +++ ++ H+ +V+ RR+ +R++  + R  IL+GL+ A   +DE+IA+I
Sbjct: 360 DQLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALI 409


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 202/699 (28%), Positives = 354/699 (50%), Gaps = 29/699 (4%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           +  +N+   ++   LE  Y+ YA+S I  RAIP++ DGFKP HR++++ M +M L  GA 
Sbjct: 1   MTHKNLVEQNITDTLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAK 59

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ-PFVQRYPLISGQGNFGNIDGDSA--AA 128
             KS+ IVG+   KL+PHGD ++Y+++VR+ +      +P I  +GNFG         AA
Sbjct: 60  -TKSSNIVGQ-TMKLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMKFAA 117

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA++ ++ E I + +D++ VDF D Y+    EPV+ P+ FP++L N   GIAVGMA
Sbjct: 118 PRYTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGMA 177

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           ++I S N++EIC+   ALID+  I IE    Y+  PDF +GG ++ S + I + Y  GRG
Sbjct: 178 SNICSFNLEEICKTTSALIDDENIVIED---YLQAPDFSSGGQLIYSAKEIRDIYNNGRG 234

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            F+VRA++        + CI + EIPY      +I++I ELI   +I  + D+RDE+   
Sbjct: 235 SFKVRAKYNY---DNKNNCIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDLS 291

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     ++ DPD+LM+ +F L+ ++  F  N N+L  G  P+VM +  IL EWL+ R
Sbjct: 292 GLKLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILING-RPRVMGVRTILNEWLSFR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425
            + + R+  + +Q    ++ +L GL    L+ID+ I IIR  ++     P ++S F + +
Sbjct: 351 VDCIKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIRKTEQEVMVVPNLISGFDIDQ 410

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q + I  ++LR+L K        E D+L+ E  ++     + K+    I  ++ E+ + 
Sbjct: 411 IQAEYIAEIKLRNLNKEYILNRVGETDSLIKEIAELKDTHGNHKKVKKIIQKQLSEIAKK 470

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALH 544
           F K       R T        +    +  IE   + + ++ + +++ +   S+  +    
Sbjct: 471 FGKP------RRTEIISDEQVEEITTEHFIEDYNLKIFLTEQNYLKKIPLVSLRANPEHK 524

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602
            K+ D++   +  H    +LL +     Y      +   +    GE +  L+ L+ ++ I
Sbjct: 525 LKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYEIPDCKASSLGEYLTNLLGLDSDEKI 584

Query: 603 VTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660
           +     D+    +L     G    ++ S     T + K      +   +  +   T D  
Sbjct: 585 IYITATDNYEGYMLFFYENGKGAKIDLSGYATKTNRKKLANAYYNGSPLIRMFFATEDIE 644

Query: 661 VAVVGENRKLLIFSIDQ--IPEMSRGKGVRLQSYKDGGI 697
           +  +    K+L+F+ +   +      +GV++ + K G I
Sbjct: 645 LIAISSINKMLVFNTESIGVKTTKNSQGVQILTSKKGSI 683


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 214/737 (29%), Positives = 378/737 (51%), Gaps = 24/737 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N  ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MDKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    L+ +  + V F + ++   +EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI ++ +AL+ N +IS +KL + I GPDFPTGG ++ S  +I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHS-AAIEELYETGKGSL 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R    +EEV  G        +++TE+PYQ+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L  G+  Q + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQ-LSLKKYLNFFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R E + +R+ + ++    ++EIL+GL  A  NI +++AII   +   + K  ++  F 
Sbjct: 359 EFREETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIKNFF 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q  ++L++ LR L  LE+ QI +E+ NL  +K     LLN  +     +  E+  +
Sbjct: 419 LSEKQASSVLDMPLRKLTNLEKNQIDNEIINLEEKKSYFQKLLNERELLLELLIEELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541
           K+ ++        +         +           +   + I NR +++ +   +   S 
Sbjct: 479 KKKYNVKRKTKVIKNINQNKELENLNNQILEEFINKKTKLCIDNRLYLKKMILGNYKKSF 538

Query: 542 --ALHFKEGDSLKIALHAH--TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597
                F +  +++     +     +++ ++  GK + +          +    ++L +++
Sbjct: 539 EVVNKFIDNKNIQK-FICNIEKNIKLIGITNTGKVFNID-WESNVNNDYKLDNKILGNIH 596

Query: 598 HNQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            ++ I   +   +    L +++S G    V   E +  + +  T  K+ +  K       
Sbjct: 597 PSEIINFHSIKKEIKNYLCILNSDGRFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFIS 656

Query: 657 T-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQS-YKDGGISDVICFKICEGLTW 711
                + ++    ++  F++    +   S+  +G+ L        I     F   E +  
Sbjct: 657 NKNKDLIILTSIGRIFRFNLSNKILTPTSKQSQGLILAKLLPSETIVSCCPFDNGENIFL 716

Query: 712 IDSAGRSYNRSENDLLG 728
           I   G+ +  + N++  
Sbjct: 717 ISRQGKIFCINSNEIYY 733



 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQD 601
              K       +  ++    +++L++ G+ +     N +L+         +L  L  ++ 
Sbjct: 642 TKLKNNLKTIDSFISNKNKDLIILTSIGRIFRFNLSNKILTPTSKQSQGLILAKLLPSET 701

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           IV+   +D+   + ++S +G  F +  +EI  +      +L 
Sbjct: 702 IVSCCPFDNGENIFLISRQGKIFCINSNEIYYSNEYSLGYLN 743


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 198/710 (27%), Positives = 340/710 (47%), Gaps = 31/710 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A
Sbjct: 27  VAEQKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
            IVG    KL+PHGD ++Y++LVRL++      +P +  +GNFG       A    RYTE
Sbjct: 85  NIVGA-TMKLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++  + E + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+++  
Sbjct: 144 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVCP 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+CE A+AL+ +P+ +    L+ + GPDFP GG ++     + + YR GRG  ++R
Sbjct: 204 FNLTEVCETAIALMKDPDANA---LDTLKGPDFPGGGYLLYDEAELDKIYRTGRGSVKLR 260

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++          CI VTEIP       +IEKI  L+ A +I  +  IRDE+  D   + 
Sbjct: 261 AKYRY---NSDERCIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 317

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +DP+ LM+ ++ L+ ++  +  N N+L     P+VM +  IL EW   R + + 
Sbjct: 318 IDIKKGVDPEKLMQKLYKLTPLQDTYSCNFNILV-HGYPKVMGVYEILDEWTKFRLDCVK 376

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDA 430
           RR ++ ++    R+ +LKGL    L+ID+ I IIR  ++   V+ +      + E Q + 
Sbjct: 377 RRVNYDLKKKRDRLHLLKGLGKILLDIDKAIKIIRETEEESEVVPNLMIGFGIDEVQAEY 436

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  ++LR L +    +  ++ + L  E  +++ +L S K+    I  E+ +V + +    
Sbjct: 437 VAEIKLRHLNREYILKRTADTERLEKEIAELEEILGSEKKLKQVIISELNDVIKNY---- 492

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHFKEGD 549
             G+ R T        +   ++  IE  P  + IS  G+ +     S+   S    KEGD
Sbjct: 493 --GQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKKCTMQSLRMASDQKLKEGD 550

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF- 606
            +   + +     +L  S     Y   A           G+ I  ++  +  +       
Sbjct: 551 RMMAEIESSNRAELLFFSDKAAVYKAKASRFGNTKASDLGDYIPAVLGFDSGEGFSAMVE 610

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D +  LL V   G A  V  +     T + K       +  +  ++K+  +  V +  
Sbjct: 611 TMDYSGYLLFVYDNGKAAKVPLNAYETKTNRKKLSNAYCEKAGLVTILKLNDNAQVMLRT 670

Query: 666 ENRKLLIFSID-QIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTW 711
            N + L+F     +P+ +R  +GV++ +   K+  I         E  T 
Sbjct: 671 TNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKIEKAYIVSDEEAETL 720


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/486 (35%), Positives = 291/486 (59%), Gaps = 5/486 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +      Q + L  IL  +L H+
Sbjct: 301 GLSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQ-LGLKRILSSYLEHK 359

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ +R+ F +    +R+EI++GL+ A   +D++I  IR        K  +++ +S TE
Sbjct: 360 KSVVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNNYSFTE 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   +  Q+ SE   L A       ++N+  +    I  E  +VK+ 
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKNRLEAVIVKEFEDVKKS 479

Query: 486 FSKSTD 491
             +  +
Sbjct: 480 LDQHVE 485


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/431 (43%), Positives = 281/431 (65%), Gaps = 10/431 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ V L+  +E  Y+ YA+S I  RAIPD+RDG KPV RR+++A+  +G+      KK
Sbjct: 7   DKVQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPDKKTKK 66

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A IVGE +GK HPHGD S+Y SLV + QP+  R+ LI  QGNFG+ DGDS AA RYTEA
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +M+++A  +L G++++ VDF   ++ E  EPVV PS+FPNLL NG +GIAVGM+T+IP H
Sbjct: 127 KMSRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMSTNIPPH 186

Query: 195 NVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +    +IDN        IE+LL  I GPDFPTG  I+  +  I E+YR GRG  
Sbjct: 187 NLREVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATIL-GKRGIEEAYRTGRGKI 245

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           ++RA   +E +  G   I+V E+PY V +SR+IEKIAEL+  KRI  +  I D + ++ +
Sbjct: 246 KMRAICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAGKNSK 305

Query: 311 IVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     + ++P +++  ++  + ++  F + M  +     P+++ L  IL+E+LAH+ 
Sbjct: 306 AKIAIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIV-RGEPKILNLLEILEEFLAHQI 364

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426
           +V+ RR+ + +Q  + R  IL+GLL A  +IDEI+AIIR   N ++ K  +++RF+ TE 
Sbjct: 365 QVVTRRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITRFAFTEV 424

Query: 427 QVDAILNLRLR 437
           Q  AI+++RLR
Sbjct: 425 QAQAIVDMRLR 435


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 197/430 (45%), Positives = 292/430 (67%), Gaps = 8/430 (1%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           + RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTD 416

Query: 426 NQVDAILNLR 435
            Q DAIL+ +
Sbjct: 417 LQADAILDTK 426


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 206/684 (30%), Positives = 362/684 (52%), Gaps = 24/684 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + +E   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MTKEKFTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VY++LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  +A    LQ +  + V + + ++    EP + P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI++ EIS  +L + I+GPDFPTGG ++ +  ++ E Y  GRG  
Sbjct: 181 IPPHNLGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELICN-SAMNEVYLQGRGSV 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            VR     EE+  G        ++++E+PYQ+ K+  IEK+AEL+   +I  + DIRDES
Sbjct: 240 TVRGVIKNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   V+    +  + ++++ ++F  + +++ F      L  G+  Q + L   L  +L
Sbjct: 300 DRDGMRVVIELKKDSNSEIVVSNLFKKTALQSNFGAIFLALVDGKPIQ-LTLRKYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
             R E + +R+ + ++    + EIL+G  IA  NI +II +I+N +   + K +++ + S
Sbjct: 359 EFREETIRKRTKYFLRIASEKFEILEGFSIATKNIKDIIEVIQNSENATEAKSILIVKLS 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+E Q DA+L++ L+ L  LE  QI+ ++  LL +K+ +++LLN+ +   + +  E++ +
Sbjct: 419 LSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKYLNNLLNNRRLLLDTLIEELKSL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540
           K+ F+        +    E             +  +   + + NR + + +  ++     
Sbjct: 479 KKKFNVKRKTKILKDINQEKEIDTINNQILEDLINKETKISVDNRFYFKKIIYNNYKKIL 538

Query: 541 -SALHFKEGDSLKIALHAHTTDRIL---LLSTDGKAYTLP-AGNLLSGRGHGEAIQLLID 595
                F +  +++        D+ L    +++ GK   +    N+ S     + +  L +
Sbjct: 539 DHENKFIDNKNVQK-FICR-IDKSLKIIGITSSGKIIQIDWKSNITSEFKMDKKV--LGN 594

Query: 596 LNHNQDI-VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           ++  + I            L ++SS G    V   E +  + +  +  K+ +   +    
Sbjct: 595 IDPKEIINFHYLDSKLKNYLCILSSDGRFKKVLFDEDMIKSNRIFSITKLKNSTSIIDSF 654

Query: 655 KVT-GDHVAVVGENRKLLIFSIDQ 677
            +     + ++    +L  F +  
Sbjct: 655 ILNKQQQLVILTSIGRLFKFDLSD 678


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/475 (33%), Positives = 289/475 (60%), Gaps = 9/475 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFS 422
            H++E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + +++ 
Sbjct: 355 EHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYD 414

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  
Sbjct: 415 FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKE 469


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 203/718 (28%), Positives = 362/718 (50%), Gaps = 29/718 (4%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +E N +  ++   L++ Y+ YA+S I  RAIP++ DGFKP HR++++ M  M L
Sbjct: 8   NSTQKYIETNKRTENIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNL 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDS 125
              A   KSA IVG+   KL+PHGD ++Y+++V+L++      +P I  +GNFG      
Sbjct: 67  L-NANRTKSANIVGQ-TMKLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRD 124

Query: 126 A--AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA RYTEA++  + + +   ++++ VDF D Y+    EPV+ P+ FPN+L     GI
Sbjct: 125 MQFAAPRYTEAKLMPLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKGI 184

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVGMA+SIPS N+ EIC   +A + +   ++    ++I+GPDFP+GG ++   E +   Y
Sbjct: 185 AVGMASSIPSFNLSEICNYTIAYLKDINCNM---FDFILGPDFPSGGELLFDEEEMKSIY 241

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             GRG F++R ++      +    I + EIPY      +IEKI +LI    +  + DIRD
Sbjct: 242 ETGRGSFKLRGKYRYL---KKEQLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIRD 298

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+  +   +     ++ D + +M  IF  + +E  F  N NVL   + P+++ +  I+  
Sbjct: 299 ETDLNGLKITIDVRKNADVESMMGKIFKYTTLEDSFSCNFNVLIDNK-PKILGIKDIIFH 357

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSR 420
           WL  RR+ + RR+   M+   +R+ +L+GL    L+ID+ IAIIRN +K     P +++ 
Sbjct: 358 WLNFRRQCIVRRTLNEMEDKSKRLFLLQGLEKIILDIDKAIAIIRNTEKEIDVLPNLMNA 417

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F++ E Q + IL ++LR+L K    +  SE+  L  E  K++ + +S K Q   I  E++
Sbjct: 418 FAIEEKQAEYILEIKLRNLNKEYILKKISEIKELEEEITKLEEIYHSQKLQDKLIISELK 477

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           ++ + +      G+ R T     +      ++   E   +T+ ++  G+++ +   S+  
Sbjct: 478 KIIKTY------GQERKTTIVSKKDVVVYSKENFTEDYAVTMFLTKDGYLKKIPELSLRA 531

Query: 541 -SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN 597
            S    K+ DS+   +  + TD  +LLST+   Y +   +L   +    G  +   + + 
Sbjct: 532 YSEQKLKDNDSILQQIEMNNTDVFMLLSTNNVLYQVKVSDLKDTKASLLGLFLPNYLKME 591

Query: 598 HNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            N+ I+   F  +    ++     G    +  S     + + K     S++  +     +
Sbjct: 592 ENERIIQMIFPEEYEGYMVYFFENGKVAKINFSSYQTKSFRKKLQNVYSTQSPLVDCFHI 651

Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
             D    +  +N + L      IPE  SR  +GV++ +       + I     +   W
Sbjct: 652 KKDETFVIFTDNYRCLSIDTSSIPEKISRSSQGVKVINLNKNAKVERIELLESDDREW 709


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/692 (27%), Positives = 330/692 (47%), Gaps = 29/692 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   + E Y+ YA+S I  RAIP++ DGFKP HR++++ M +MGL  G    KSA
Sbjct: 27  VVEQPIVSTIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGLLNGGR-TKSA 84

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAA--AYRYTE 133
            IVG    KL+PHGD ++YD++VRL++ +    +P +  +GNFG       A  A RYTE
Sbjct: 85  NIVGA-TMKLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSRDMAWAASRYTE 143

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++  +   + + +D+D VDF D Y+    EP + P  FP++L N  +GIAVGMA++I S
Sbjct: 144 AKLDAICNELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASNICS 203

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N++EICE   ALI +P+  I+  L     PDF  G  I+     I + Y  GRG  ++R
Sbjct: 204 FNLREICETTAALIRDPDHDIKSTL---PAPDFTGGCQIIYDENVINQVYETGRGSIKLR 260

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++      + + CI +  IP       +IEK+ +L+   ++  + DIRDE+  D   + 
Sbjct: 261 AKYVY---DKSANCIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGLKIT 317

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R +D D LM  ++  + +E  +  N NVL  G VP+V+ +  +L+EW+A R E + 
Sbjct: 318 IDLKRGVDADKLMTKLYRFTTLEDSYACNFNVLIAG-VPRVLGVKALLEEWIAFRIECVR 376

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDA 430
           RR+ F       ++ +L+GL    L+ID+ + I+R  D+   V+ +      + E Q + 
Sbjct: 377 RRTYFDRNKKADKLHLLRGLEKILLDIDKAVKIVRETDEESEVVPNLMIGFGIDEIQAEY 436

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  ++LR L +    +   +L++L  E  ++D +L S  +    I  E++ + E + +  
Sbjct: 437 VAEIKLRHLNREYILKRTKDLEDLEKEIAELDEILKSKARIKTIIVKELKSIAEKYGQP- 495

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGD 549
                R +        +   +   I   P+ +  +  G+ + +   S+ +S     K+GD
Sbjct: 496 -----RKSIIIYDDVARYEEETVEIPDYPVNLFFTKEGYFKKITPQSLRMSGEQKLKDGD 550

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
            +   L       +L  +   + Y   A +    +    G+ +   +  +  ++ V   V
Sbjct: 551 EIIQELEFTNNCDLLFFTDKCQVYKAKADDFAQTKASVLGDYVAAKLGFDEGENAVKMVV 610

Query: 608 Y-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-G 665
             D    LL     G A  V        T + K     S +  +  ++ +  D   +   
Sbjct: 611 TKDYKGMLLFAFENGKAAKVPLESYATKTNRKKLTGAYSDKSPLVGLLYMPEDEEVLFKA 670

Query: 666 ENRKLLIFSID--QIPEMSRGKGVRLQSYKDG 695
            +  +L+       +      +GV +   K G
Sbjct: 671 SSGNMLLVHTGALALKTTRSTQGVAVLKPKKG 702


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/733 (28%), Positives = 359/733 (48%), Gaps = 68/733 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++   ++SL+  ++  YL YA+S I  RA+PD RDG KPV RRI+ AM E+GL     
Sbjct: 1   MDKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F  +YP + G GNFG++D D  AA RY
Sbjct: 61  FRKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRY 120

Query: 132 TEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           TE R+  ++    L+ +D + V+F + ++    EP V P++ P LL NG+SGIAVGMAT+
Sbjct: 121 TETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATN 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +  +ALI+N E+S +KL   I GPDFPTGG ++ SR  I E Y  G+G  
Sbjct: 181 IPPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRA-IEELYATGKGSI 239

Query: 251 RVRARWCVEEVGRG-----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +R     E +  G        +++TE+P+Q+ K+  IEK+AEL+ + +I  + DIRDES
Sbjct: 240 TIRGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDES 299

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    +  + +L++ +++  + ++T F      L  G+  Q + L   L  +L
Sbjct: 300 DRDGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQ-LNLKQYLNYFL 358

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI---IRNEDKPKPVMVSRFS 422
             R E + +R+++ ++    ++EIL+GL  A  NI +II I     N  + K  ++  F 
Sbjct: 359 EFREETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLIDIFY 418

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L+  Q +++L++ L+ L  LE+ QI  ++  L  +K+   +LLN  K     +  E+  +
Sbjct: 419 LSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKDYFQNLLNERKLLLELLVDELLIL 478

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ ++        +                     +   + I NR ++R +  ++   S 
Sbjct: 479 KKKYNVKRKTKLLKNIDQNEELETINNQILEDFINKKTKLFIDNRLYLRKMILNNYKKSF 538

Query: 543 LHFKE--GDSLKIALHAH--TTDRILLLSTDGKAYT--------------------LPAG 578
               +   +        +     +I+ ++  GK +                     +   
Sbjct: 539 EDVNKIIDNKNIQKFICNIDKNVKIIGITYTGKVFHINWESNINNDYKLDKKIIGNIDQN 598

Query: 579 NLLSGRGHGEAIQLLI----------------------------DLNHNQDIVTAFVYDS 610
            +++     + I+  +                             L +N   + +F++  
Sbjct: 599 KIINFHSIKKGIKNYLCILNSDGRFKKVLFDEDMIKSNRCFSITKLKNNIKTIDSFIFSE 658

Query: 611 TCKLLVVSSKGNAFIVEESEII----ANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVG 665
              L++++S G  F    S           +G    K+   EK+        G+++ +V 
Sbjct: 659 EKNLIILTSIGRMFKFNLSNKFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVS 718

Query: 666 ENRKLLIFSIDQI 678
              K+   + ++I
Sbjct: 719 RKGKIFCINSNEI 731


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/477 (39%), Positives = 302/477 (63%), Gaps = 8/477 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + +++L   ++  Y+ Y++S I  RA+PD +DG KPV RR+++ M E G      ++K
Sbjct: 2   EKIISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQG--AFKNYRK 59

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD SVY+++VR+AQ +  RYPLI GQGNFG+ID D  AA RYTE 
Sbjct: 60  SARIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEI 119

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ +V+E +L  + +D VD +  ++    EP+V P+  PNLL NG+SGIAVG+AT++P H
Sbjct: 120 KLQKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E   A  + I+N +ISIE+L++ II PDFPTGGI +   E + +++  GRG   +R+
Sbjct: 180 NIVESINAICSYIENTDISIEELMKDIIAPDFPTGGI-IYGYEGVKKAFLTGRGKILLRS 238

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +   E++G G +C+++ EIPYQ++K  LI+K  +LI  +++  +  IRDES      ++F
Sbjct: 239 KVFFEKIG-GCYCLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVF 297

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              ++++  LL+++IF  + +ET F +N   L  G+  Q + L  I+K ++ HR EVL R
Sbjct: 298 YLKKNVNKHLLLKNIFKYTPLETTFSVNNIALVNGKPVQ-LNLKDIIKHFVNHRHEVLIR 356

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           RS F ++    +  I+KG  +   NI+ +I +I++  +    K  ++ +F+L+E QV AI
Sbjct: 357 RSKFDLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIKFNLSEKQVKAI 416

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           LNL+L SL KLE  +IK +   L  +     ++      Q   I  E++++KE +  
Sbjct: 417 LNLKLNSLTKLENEKIKKDYLKLKKDISYYTNIKTDIFFQKKIIKKELKQIKEKYGD 473


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/593 (31%), Positives = 308/593 (51%), Gaps = 28/593 (4%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP+V PS+ P LL NGT+GIAVGMAT+IP H++ E+C+A  ALI+N  ++++ L++++ G
Sbjct: 3   EPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFVKG 62

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTGG I+ S+  + E Y  G+G  R+R  + +E+V +G   I++T IPY V KS L+
Sbjct: 63  PDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKSTLV 122

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
            KI +L+  +++PLL D+RDES ++VRIVL  K R   P+L+M  ++  + ++T F +N+
Sbjct: 123 SKIGDLVRERKLPLLLDVRDESTKEVRIVLEFK-RDASPELVMAYLYKHTPLQTNFGVNL 181

Query: 344 NVLSMGRVPQV-----MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
             L     P+V     + L  IL+ +L  R EV+ +R    +  + +RV IL+G    Y 
Sbjct: 182 TCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVYD 241

Query: 399 NIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            +DE+I IIR  +        +++RF L E QVDAIL ++L  L +LE   I+ EL    
Sbjct: 242 ALDEMIRIIRASEGKQDAAKKLMARFKLDEVQVDAILEMKLYKLARLEILVIQEELKQKR 301

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E ++I+ +L   ++ W  +  E+ E+K  ++       RRT        +    + A I
Sbjct: 302 LEVKRIEGILKDKRKLWGTVKDELAEIKATYNDK-----RRTRIGGAGSEEVEFSEDAFI 356

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             E   VV++  GWI+ +     D S    +EGD++   L       ++L S  G AY  
Sbjct: 357 VDEDAHVVLTRDGWIKRV-REVKDPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAYVT 415

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEES-E 630
              ++ +  G+G+ +Q L   +  + IV A   DS      KL+ V+  G          
Sbjct: 416 RFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPRPQKLVAVTKDGLGLRFPLEGH 475

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVR 688
           +  +TR G+ + K    +++  V  V   D +AV+ E     +    ++ E+   GKGV 
Sbjct: 476 VEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAGPGKGVL 535

Query: 689 LQSYKDGG-ISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
           +   + G  + + +     +    +T+    GR    S       +  RGG G
Sbjct: 536 VIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYE--VTGRGGKG 586


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 205/467 (43%), Positives = 306/467 (65%), Gaps = 14/467 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             D  S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     +
Sbjct: 121 VTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVEL 180

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            + YR GRG  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++E
Sbjct: 181 EKIYRSGRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVE 235

Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L
Sbjct: 236 DLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGL 295

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
             IL EW++ RRE +  R  +R+  +  R+ IL+GLLIAYLN+DE+I IIRNED PK V+
Sbjct: 296 VQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVL 355

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           ++RF LT+ Q DAIL+ +LR L KLEE +I+ E D L  E++K++ LL S ++  N +  
Sbjct: 356 MARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKK 415

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           EI+   + F        RR+   E     KA  ++ ++  E ITVV+
Sbjct: 416 EIKADADKFGD-----DRRSPLVEREE-AKALTERDLMPSEAITVVL 456


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 199/692 (28%), Positives = 345/692 (49%), Gaps = 29/692 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++   +   LE  Y+ YA+S I  RA+P++ DGFKP HR++++ MS+MGL       KSA
Sbjct: 8   IEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLL-TKGRSKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFV-QRYPLISGQGNFGNIDGDSA--AAYRYTE 133
            IVG    KL+PHGDQ++Y+++V++ +      +  +  +GNFG +       A+ RYTE
Sbjct: 66  NIVG-TTMKLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASARYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++ +  + I   +D++ VDF D Y+    EP + P+ FPN+L     GIAVGMA  IPS
Sbjct: 125 AKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHIPS 184

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N++E+CEA +A + + EI    LLEY+  PDF TGG ++ +  ++ + Y  GRG F+VR
Sbjct: 185 FNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFKVR 241

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            ++   +       I + EIPY      +IE I EL+   +I  + DIRDE+ ++   + 
Sbjct: 242 GKYRYVKADN---AIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKIT 298

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R ++PD LM   F  + +E  F  N N+L  G  P+VM +  IL  W+A R   L 
Sbjct: 299 IDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGH-PKVMGVKEILDHWIAFRLSCLK 357

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
           R+  F +  ++ ++ +LKGL    LNI E++ +I+N  K K     ++ +F L   Q + 
Sbjct: 358 RQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQAEY 417

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  ++LRSL +    +   E+  +  E +++  +L    +Q   I  +++ + E +    
Sbjct: 418 IAEIKLRSLNQELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIP- 476

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGD 549
                R T        +   ++ +IE   + + ++N G+I+ +   S+  S     K+ D
Sbjct: 477 -----RKTDIINENEVEVLSEEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLKDND 531

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV 607
            +   +       +LL S     Y + A  L   +    G+ +  ++ L+ ++ I+    
Sbjct: 532 YIVQEIDGTNRGEVLLFSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVC 591

Query: 608 YDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666
            +     +L     G    +  +     T + +     S +  +  +  +  D   +   
Sbjct: 592 TEDYQGHMLFFFENGKGAKIPITSYETKTNRKQLANAYSGDSPLVYISSIEEDLEMMATS 651

Query: 667 N-RKLLIFSIDQI-PEMSR-GKGVRLQSYKDG 695
           N  K LIF+ +++ P  SR  KGV++   K G
Sbjct: 652 NLNKTLIFNTEEMSPINSRNSKGVQVFKCKKG 683



 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-VDLSALH 544
           F     +  ++    +    D+   Q+ + E   +   ++  G+I+ +   + V+     
Sbjct: 678 FKCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPLTTLVEDEEQR 737

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----GEAIQLLIDLNHNQ 600
            K+ D +   +       +LL S     Y   A  L          G+ I+ ++ L+ ++
Sbjct: 738 LKKDDYIIQEVEGAEEGELLLFSNKQILYKTKARELEEDEDKVASIGQRIRSILALDADE 797

Query: 601 DIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
           DI+     D+    +L     G    +        T + +     + E  +  +  +  D
Sbjct: 798 DIIYITYTDNYKGHMLFFFENGKGAKIPLESYETKTNRKQLANAYNGESPLVYISNIQED 857

Query: 660 HVAVVGEN-RKLLIFSIDQIPEMSR--GKGVRLQSYKDG 695
              V   N  K+LIF+  QI   S    KGV++   K+G
Sbjct: 858 IELVATSNINKILIFNTAQINPKSSRDSKGVQILKSKEG 896


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/725 (29%), Positives = 356/725 (49%), Gaps = 61/725 (8%)

Query: 60   AMSEMGLDFG-AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
               ++ +D    AF     +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNF
Sbjct: 382  TTYDIQVDADEHAFVVDGLVVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNF 441

Query: 119  GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
            G+ D D  AA RYTEARM+  A L++  +DED V+FR  Y+   +EP V P+ FPNLL N
Sbjct: 442  GSPD-DGPAASRYTEARMSGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVN 500

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            GTSGIAVGMAT++  HN+ E+  AA  L+ +P+  +EKL+E+I GPD PTGG+++   + 
Sbjct: 501  GTSGIAVGMATNMIPHNLGEVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLL-GLDE 559

Query: 239  IVESYRLGRGGFRVRARWCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-I 295
            + ++Y  GRG  R+RA       E  RG   I VTE+PY V   ++IEKI + +   + +
Sbjct: 560  VRKAYETGRGVVRMRATVTTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRL 619

Query: 296  PLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
              + D++D +   +   ++      ++P  L+  ++ L+ +E  F +N  VL  G+ PQ 
Sbjct: 620  TGIADVKDLTDRENGIRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQT 678

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NED 411
            + L  +L+ +LAHR EV+ RR+ FR +  + R+ ++ GLL A ++ID++I +IR   N  
Sbjct: 679  LGLKALLEVFLAHRYEVVTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQ 738

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              K  +VS F+L+E Q   IL+  LR L + +  +++ E + L  E  ++ ++L+  K  
Sbjct: 739  AAKEGLVSTFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVL 798

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNR 527
               ++ E+ +V +  S       RRTT  +    +     +         +P  VV+S  
Sbjct: 799  RRVVSNELGKVAKDLS-----AERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSAT 853

Query: 528  GWIRSLKSHSVDLSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAYT---LPAGNL 580
            G +    + S +      + G    D++   +H     ++LL+++ G+A+    LP   L
Sbjct: 854  GLVARTAAESEEAVEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVL 913

Query: 581  LSGRGH-----GEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFI------VE 627
              G G      G  ++ L+ L   + +V       T    L + + +G   +      V 
Sbjct: 914  PQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGETDSPGLALGTKQGVVKVCAPEWPVR 973

Query: 628  ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMS-RG 684
              E           + + + +++     +     A+  V     LL ++   +     RG
Sbjct: 974  SDEFE--------VIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRPQGLRG 1025

Query: 685  KGVRLQSYKDGGISDVICF-----KICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
             G+   +    G + V+ F        E      + S G+S   +  DL    G R   G
Sbjct: 1026 GGMAGITLP--GEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKG-RATGG 1082

Query: 738  SLVPK 742
                +
Sbjct: 1083 VRAHR 1087



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V   SL   +E+ YL YA S I  RA+PD RDG KPVHRRI+ +M+E      + + KS
Sbjct: 22  KVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKS 81

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +R+VG+   +       S     VR  +  V    ++   G
Sbjct: 82  SRVVGDCFVRGALVSTPS----GVRPIEEIVVGDHVLDPAG 118


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/636 (21%), Positives = 249/636 (39%), Gaps = 119/636 (18%)

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
           PDFPTG  I+  R  I  +Y  GRG   +R    +E +      I++TEIPYQV K+ +I
Sbjct: 2   PDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMI 60

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           EK+AEL+  KRI  + D+RDES      V+    R  + ++++  ++  + ++T F  NM
Sbjct: 61  EKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNM 120

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             L+ G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+
Sbjct: 121 VALN-GGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEV 179

Query: 404 IAIIRNEDKPKPVMVS-----------------------------RFSLTENQVDAILNL 434
           I +IR    P+                                   ++L+E Q  AIL L
Sbjct: 180 IRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILEL 239

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ F        
Sbjct: 240 RLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTP----- 294

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+         + +I +E + V +S+ G+I+          +      S +  +
Sbjct: 295 RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTR 351

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604
           + D +      +T   +L  S+ G  Y      L  G     G+A+  ++ L   + I T
Sbjct: 352 DEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITT 411

Query: 605 AFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT 657
                          ++  +++G     + S+ +   R GK  +K+    +++  V   T
Sbjct: 412 ILPLPEDEANWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCT 471

Query: 658 G-DHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICFKI--------- 705
             D V +     + + FS+D +     R   GVR  +  +G    +I   I         
Sbjct: 472 ERDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEG--DRIISMTIVGHVDAEPW 529

Query: 706 -------------------CEGLTWI--------------------------DSAGRSYN 720
                               E +  +                            + + + 
Sbjct: 530 ERAAYLKRSATERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFG 589

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
           +  +     +  RGG G        ++   G+ +++
Sbjct: 590 KRSSSYDFRISGRGGKGIRAT-DTSKTGEIGELVAA 624



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 75/280 (26%)

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSA 542
             + G R TT   +   +               +  + RG +R  K             A
Sbjct: 402 PLEPGERITTILPLPEDEANWDNLD-------VMFSTTRGTVRRNKLSDFVQVNRNGKIA 454

Query: 543 LHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           +  +E GD +         D +LL +  G+       ++    G        I+L     
Sbjct: 455 MKLEEEGDEILSVETCTERDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDR 514

Query: 602 IVT-----------------------------------AFVYDS---------------- 610
           I++                                   A V +                 
Sbjct: 515 IISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVTEEGQLSDERYEELK 574

Query: 611 --TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVA 662
                +L VS KG        +   + R GK      +       E +       GD + 
Sbjct: 575 AREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIM 634

Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
           +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 635 LVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 674


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 202/709 (28%), Positives = 342/709 (48%), Gaps = 46/709 (6%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F     +V   +GK HPHGD ++YD++VRLAQ F    PLI G GNFG+ D D  AA
Sbjct: 79  DHEFATEGFVVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAA 137

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+  A L++  + ED VDFR  Y+    EP V P+ +PNLL NGTSGIAVGMA
Sbjct: 138 SRYTEARMSNEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTSGIAVGMA 197

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++  HN+ E+  AA  LI++P  +++KL+EY+ GPD PTGG  +   + + ++Y  GRG
Sbjct: 198 TNMIPHNLGEVIGAARWLINHPNATLDKLMEYVPGPDLPTGG-SLLGLDEVRKAYETGRG 256

Query: 249 GFRVRARWCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDES 305
             R+RA       E  RG   I VTE+PY V   ++IEKI + +   + +  + D++D +
Sbjct: 257 VVRMRANVETGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLT 316

Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++      ++P  L+  ++ L+ +E  F +N  VL  G+ PQ + L  +L+ +
Sbjct: 317 DRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQ-PQTLGLKALLEVF 375

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L HR EV+ RR+ +R +  + R+ ++ GLLIA LNID++I +IR  +     K  ++++F
Sbjct: 376 LKHRYEVVTRRTRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKDGLMTKF 435

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            L+E Q   IL+  LR L K +  ++++E D L AE  ++ ++L         ++ E+ +
Sbjct: 436 KLSEIQATYILDTPLRRLTKYDRLELENEQDKLRAEIAELTTILEDESVLKKLVSTELAK 495

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHS 537
           + + F        RRT   +    +     +         +P  V++S  G +    + S
Sbjct: 496 IAKDFPTE-----RRTRLIDGDLKEVLAASKPSGPLEVADDPCQVILSATGLVARTAAES 550

Query: 538 VDLSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGR 584
            + S +  + G    D++   +H     ++LL+++ G+A+      L          S R
Sbjct: 551 EEASEVRRRNGRVKHDAVSAVVHTTARGQVLLVTSRGRAFKTDVLPLPVLPEQAGTVSLR 610

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
           G G A + L+ L   + +V              L + ++G    V   +    + +    
Sbjct: 611 G-GMAAKELVPLEKGERVVGIAPLGEQAGDSPGLAIGTRGGVVKVCAPDWPVRSDE-FEV 668

Query: 642 LKVSSEEKMKLVV-KVTGDH-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGIS 698
           + +   +++        G+  +A +  +  LL F+   I     +  G+          +
Sbjct: 669 ISLKPGDEIVGATWLTDGNETLAFISSDSSLLRFAASLIRPQGTKSGGMAGMKLAANATA 728

Query: 699 ---DVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
                I     E      + + G+S   +        G R   G    +
Sbjct: 729 IFFGAIRTDDEEHGEPMVVTATGQSVKVTPFSEYPAKG-RATGGVRAHR 776


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 203/710 (28%), Positives = 342/710 (48%), Gaps = 31/710 (4%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   LE+ Y+ YA+S I  RA P++ DGFKP HR++++ M  MGL  G    K A
Sbjct: 26  VAEEKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 83

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAAAY--RYTE 133
            IVG    KL+PHGD ++Y++LVRL++      +P +  +GNFG       A    RYTE
Sbjct: 84  NIVGA-TMKLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 142

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A++  + E + + +D++ VDF   Y+   +EP +FP+ FP +L N   GI V MA+S+  
Sbjct: 143 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVCP 202

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
            N+ E+CE A+ALI N + +    L+ + GPDFP GG ++     + + YR GRG  ++R
Sbjct: 203 FNLAEVCETAIALIKNKDANA---LDTLKGPDFPGGGYLLYDEAELEKIYRTGRGSVKLR 259

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           A++      +   CI +TEIP       +IEKI  L+ A +I  +  IRDE+  D   + 
Sbjct: 260 AKYRF---NKEERCIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 316

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               + +DPD LM+ ++ L+ ++  +  N N+L     P+VM +  IL EW   R + + 
Sbjct: 317 IDIKKGVDPDKLMQKLYKLTPLQDTYSCNFNILV-HGYPKVMGVYEILDEWTRFRVDCVR 375

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDA 430
           RR  + ++    ++ +LKGL    L+ID+ I IIR  ++   V+ +      + E Q D 
Sbjct: 376 RRVEYDLKKKKDKLHLLKGLGKILLDIDKAIRIIRETEEESEVIPNLMIGFGIDEIQADY 435

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +  ++LR L +    +  SE + L  E  +++ +L S K+  + I  E+++V + +    
Sbjct: 436 VAEIKLRHLNREYILKRTSETEKLEKEIAELEDVLGSEKKIKDIIIRELKDVIKNY---- 491

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHFKEGD 549
             G+ R T        +   ++  IE  P  + IS  G+ +     S+   S    KEGD
Sbjct: 492 --GQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKKCTMQSLRMASDQKLKEGD 549

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF- 606
            +     +     +L  S     Y   A           G+ I  ++  ++ +   T   
Sbjct: 550 RMMSETESSNRAELLFFSDKASVYKSKASRFGNTKASDLGDYIPAVLGFDNGEAFHTMVE 609

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665
             D +  LL V   G A  V        T + K     S +  +  ++K+T +  V +  
Sbjct: 610 TMDYSGCLLFVFENGKAAKVPLDSYATKTNRKKLANAYSDKSPLVAILKLTDNAQVMLRT 669

Query: 666 ENRKLLIFSID-QIPEMSR-GKGVRLQSY--KDGGISDVICFKICEGLTW 711
            N + L+F     +P+ +R  +GV++ +   K+  +         E    
Sbjct: 670 TNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKVEKAYIVSDEEAENL 719


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 262/548 (47%), Gaps = 25/548 (4%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           + ++++L+E I GPDFPTGG  ++  E I ++Y  G+G   +R +  VE++  G   IV+
Sbjct: 1   DCTVDELMEVIKGPDFPTGG-TIQGAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVI 59

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TEIP++V K+ L++KI EL + +++  + ++RDE+      ++    +  D   ++  ++
Sbjct: 60  TEIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELKKDADAAGVLNYLY 119

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
             +D++  +  NM  +S    P+++ L  +L  ++ H++EV+ RRS + ++    R  I+
Sbjct: 120 KNTDLQIPYNFNMVAISNRH-PKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHIV 178

Query: 391 KGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           +GL+ A   +DE+IA IR        K  ++S+F  TE Q +AI++L+L  L   +   +
Sbjct: 179 EGLMKALSILDEVIAAIRASKDKRDAKDNLISQFGFTEPQAEAIVSLQLYRLTNTDITAL 238

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           ++E + L  +  ++ S+L S K+  + I  ++++VK+ F+ +      R +  E    + 
Sbjct: 239 RAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVKKRFADA------RRSVIEAEIEEI 292

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRIL 564
               + +I  E + V ++N G+++     S    +      K+ D L   L  +TTD +L
Sbjct: 293 KINLEVLIASEDVIVTVTNEGYVKRTSQRSFAASNGQDFGMKDSDRLMSKLDMNTTDVLL 352

Query: 565 LLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
           + +  G    LP   L     +  G+ +  L+ ++  + I+ A     +++   L+ ++ 
Sbjct: 353 VFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRTESIIGAIPVKDFEAEAYLMFITK 412

Query: 620 KGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
            G     E     A    K    + + +++ +  V    G   + +       L F  ++
Sbjct: 413 NGMVKKSELKNYKAQRYSKPLVAVNLKNDDVVTDVFLTDGKQDLMLATSMGYALWFPEEE 472

Query: 678 IPEMS-RGKGVRLQSYKDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  GV+  + KDG   +S  +   + E    I +  R   +           R 
Sbjct: 473 VSVVGARAAGVKGINLKDGDYVVSGKLVSNVKEEAVVI-ATQRGAIKKMKLAEFERTSRA 531

Query: 735 GVGSLVPK 742
             G ++ +
Sbjct: 532 KRGLVMLR 539


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter marinus]
          Length = 470

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 197/481 (40%), Positives = 306/481 (63%), Gaps = 14/481 (2%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           +I++AM ++ +   + +KKSARIVG+VIGK HPHGD SVYD+LVRLAQ F  R PL+ GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG++DGD+AAA RYTEARMT+++E IL+ +D+D V+F   Y++   EP V P++ P L
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG+ GIAVGMAT IP HN++E+ EA L  IDN E + E L+++I GPDFPTGG I   
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIF-G 179

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I+++Y+ GRG  ++RA+  +E  G+    IV+ E+PYQV KSRLIE+IA L   K +
Sbjct: 180 RRGIIDAYKTGRGRVKIRAKHHIETKGK-KEVIVLDELPYQVNKSRLIEQIAILAKEKNV 238

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + ++RDES  +   V+    +    ++++ +++  + MET F + +  +     P+V 
Sbjct: 239 EGISEVRDESDREGIRVVIELKKDAMSEIVLNNLYKSTPMETTFGIILLAVHNKE-PKVF 297

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412
            L  +L+ +L+HR+ V+ RR+ F ++    R  IL+GL IA  NIDE++ IIR   N+  
Sbjct: 298 NLPELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAD 357

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            K  +  RF L+  Q  AIL++RL  L  L+  +++++  ++L    +++++L S ++  
Sbjct: 358 AKEKLQERFELSLIQSQAILDMRLGRLTGLQRDKLEADYQDILRLIHELEAILKSEEKLN 417

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             I  EI+E+KE +S      RRR    E+  +      + +I  EP+ V I+  G+++ 
Sbjct: 418 EIIKEEIQEIKEKYSDE----RRR----EIEDSYDEIDIEDLIPNEPMAVNITRNGYVKR 469

Query: 533 L 533
           +
Sbjct: 470 V 470


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/407 (43%), Positives = 258/407 (63%), Gaps = 6/407 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + +SN   +  V    L     E Y+AYA+S +  RA+PD+RDG KPVHRRI+ AM E+G
Sbjct: 98  VKDSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELG 157

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L     FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F  R PLI G GNFG+ID D 
Sbjct: 158 LSSRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADP 217

Query: 126 AAAYRYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA RYTE R+  + E ++L  ++ D VDF   +++   EP + P++ P LL NG+SGIA
Sbjct: 218 PAAMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIA 277

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +   ALI NPE ++++LLEY+ GPDFPTGG+I+ +   I+E+YR
Sbjct: 278 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNL-GILEAYR 336

Query: 245 LGRGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            GRG   VR +  VE  +       +++ EIPYQ  K+ L+EKIAEL+  K +  + DIR
Sbjct: 337 TGRGRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIR 396

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           DES      ++    R  DP +++ +++ L+ +++ F  NM  +  G+ P+ M L  +L+
Sbjct: 397 DESDRSGMRIVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQ-PKQMGLKDLLQ 455

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
                R  V+ RR+ F++     R  I++G++I   N+D +I II+ 
Sbjct: 456 ASY-FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 308/636 (48%), Gaps = 48/636 (7%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEAR+T++A  +L  +D++ VD ++ ++    EP V P+KFPNL+ NG SGIAVG++T+
Sbjct: 533  NTEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTN 592

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            IP HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI++   E IV+ Y  GRG  
Sbjct: 593  IPPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSV 652

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             V+ +  +E +      I++ EIPYQV K  LI++IAEL+   +   + D+RDES  D  
Sbjct: 653  TVKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGI 712

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             ++    R  DP+ +++ ++  + ++   P+N+ VL  G+ P+ + L G+L+E++ HR +
Sbjct: 713  RIVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLV-GKQPKTVDLKGLLQEFIKHRVD 771

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
            V+ RR+ F ++  + R+ I++GLL A  N D +I I+R+       +  +V  F L++ Q
Sbjct: 772  VITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDTQ 831

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              AIL++RL     LE  ++  E D+L  + E+   +L+S +++      EI E+ E F 
Sbjct: 832  AQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEEKIRVFIEEIDELLEKFG 891

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-- 545
                   R+T   E   A           +E   + + + G I + +          F  
Sbjct: 892  DE-----RKTVIVEEKEAGLTF-------EEHYILAVLSSGRILNRRIDDDADKKDIFQK 939

Query: 546  ---------KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                     K G+ L       ++  I  ++  GKAY     +L  G G        I++
Sbjct: 940  VMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADLPKGEGR-------INI 992

Query: 597  NHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
            +  + + TAF  +    +L +++  G    +   +I   ++   + + ++ ++   +V  
Sbjct: 993  DEGEIVGTAFKGEGEEDRLFILTKNGIIKRMSYEDIFYKSQN-HSIIPLAEDD--CVVTA 1049

Query: 656  VTGDHVAVV---GENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTW 711
               DH +++        LL+F  +Q+     + KGV      +G       F I      
Sbjct: 1050 FADDHPSLIGVYTRKGDLLLFERNQVRVTGDKAKGVEAIDLDEGDTV-AGGFLINSEDLI 1108

Query: 712  IDSAGRSYNRSENDLLGW-----LGKRGGVGSLVPK 742
            +      Y +       +     + KR   G +  K
Sbjct: 1109 MTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVK 1144



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/118 (59%), Positives = 86/118 (72%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   ++  YL YA+S I  RAIPD+RDG KPV RRI++AM+E+GL     +KKSA
Sbjct: 4   IIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           R+VGEV+GK HPHGD SVYD+LVR+AQ F  RYPLI GQGNFG+IDGD  AA RY   
Sbjct: 64  RVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRYCVT 121


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/397 (44%), Positives = 252/397 (63%), Gaps = 13/397 (3%)

Query: 6   ISNSNTLVEENVKA-----------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVH 54
           +S++  L E + +            +S+   +   YL YA+S I  RAIPDLRDG KPVH
Sbjct: 1   MSDTPDLPETDAEKTPERPIHAGPTISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+ AM+E G     AF+KSAR VG+ +GK HPHGD S+YD+L R+AQ F     LI G
Sbjct: 61  RRILFAMNESGNTHDKAFRKSARAVGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEG 120

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG++DGDS AA RYTEAR+ +VA  +L  +D+D VDF+D Y+ +D EP V P++FPN
Sbjct: 121 QGNFGSMDGDSPAAMRYTEARLAKVASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPN 180

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           +L NG  GIAVGMAT+IP HN+ E+ +A +ALI NP+++ E L++Y+  PDFPTGG+I+ 
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMIL- 239

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R    ++Y  GRG   +RAR  VEE+ +  + I+V ++PYQV KS +I+KIAE +  KR
Sbjct: 240 GRSGARKAYLEGRGSILMRARSHVEEIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKR 299

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  +  I+DES  +   V+    R    D+++  ++  S M+  F  NM  L+ G  P+ 
Sbjct: 300 IEGIAHIQDESDRNGVRVVIELKRDATADVVLNQLYRFSPMQISFGANMLALN-GGRPET 358

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           + L   L+ ++  R EV+ RR++F ++    R  I  
Sbjct: 359 LTLYRFLQCFIDFREEVVARRTAFELRKARERAAISC 395


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/767 (25%), Positives = 362/767 (47%), Gaps = 51/767 (6%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +N +   +   L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       K
Sbjct: 665  DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721

Query: 75   SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYT 132
            SA IVG  +  L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYT
Sbjct: 722  SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            EA  + + +    G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ P
Sbjct: 781  EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            S N++E+C+  +A I +  I +     Y++ PDF TGG IV   + + + Y  G+G   +
Sbjct: 841  SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR---DESAEDV 309
            RA++ V++       I+VTEIPY   +  +++ I  L    +  ++ +I    D +    
Sbjct: 898  RAKYGVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKG 952

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
              +     ++ + +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR
Sbjct: 953  MSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRR 1012

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTE 425
              + R S++  +  + ++ +L    I   +ID ++ I    I ++D  K + +  F + +
Sbjct: 1013 MCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLY-FKIDQ 1071

Query: 426  NQVDAILNLRLRSLRKLE-EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q + + N++L+ L K       + ++  L  E   + ++ N   +  N I  +++ +++
Sbjct: 1072 EQAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRD 1131

Query: 485  IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +        R+T    V      TL+   IE    T+V++ + +I+  +  S    +  
Sbjct: 1132 KYKIP-----RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQK 1183

Query: 545  FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLID--LNHNQ 600
             K+ D +      +  D +LL +  G         L   +   +G+ +  L+   L +++
Sbjct: 1184 LKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDE 1243

Query: 601  DIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            +++      D    ++ V   G     +         +       +++ K+  +  +T D
Sbjct: 1244 EVIYISTTKDYKGSVVSVFENGYIARTDLQTYKPKQNRQIPMSAYNTDSKIVSIQLITND 1303

Query: 660  -HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK---DGGISDVICFKICEGLTWID 713
              + +V +  K LI +  QI    SR  +GV         +  I+ +I   + +      
Sbjct: 1304 TDILLVSQEGKSLIINTSQIRPTKSRNTQGVSGMKIDIETNKIIASIIGVTVDDNFNIET 1363

Query: 714  SAGRSYNRSENDL---------LGWLGKRGGVGSLVPKGFPRSGKFL 751
              G+S     ND+             G R   G+ +     ++ K +
Sbjct: 1364 EKGKSKFIMLNDVAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 1410


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/673 (29%), Positives = 335/673 (49%), Gaps = 27/673 (4%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +   V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL  G   
Sbjct: 23  LHSEVTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER- 80

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI--DGDSAAAY 129
           +KSA IVG+   KL+PHGD ++Y+++VRLA        P +  +GNFG       + AA 
Sbjct: 81  QKSANIVGQ-TMKLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAAS 139

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+
Sbjct: 140 RYTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMAS 199

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            I   N+ E+C A +  +++P      LLEY+  PDF TGG I+  RE +      G G 
Sbjct: 200 DICGFNLNEVCTATMHYLEDPSC---DLLEYMPMPDFSTGGEIIYRREEMERIIETGLGS 256

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           F++R+RW           I V EIPY  +   +I++I +L    ++  + DIRDE+    
Sbjct: 257 FQIRSRWR---WVPEERIIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRDETDLSG 313

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             +     R +DP+ LM  ++  + ++  F  N NVL  G  P+VM +  IL EW+A R 
Sbjct: 314 LRIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGY-PRVMGVRQILHEWVAWRV 372

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426
           +   RR +F +     R+ +L GL    L+ID+ IAIIR    E +  P ++  F + E 
Sbjct: 373 QSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKGFDIDET 432

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q + +  L+LR++ +        ++  L AE  +++ +L+S       I  E+  V + +
Sbjct: 433 QAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEILSSEDNIKKVIRDELAAVNKKY 492

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSALHF 545
                   RRT   E S        +  IE+ P+T+++S  G+++ +    +   +AL +
Sbjct: 493 VMP-----RRTGRIEPSDV-IEVSLEPEIEEYPVTIMLSREGYLKKMTDRVLKKAAALKY 546

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603
           K+GD   I   +  T  +L+ +   + Y          +    G  +   +++  ++ ++
Sbjct: 547 KDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLEMEPDESVI 606

Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661
            A    D    +L +   G A  V  +  +  T + +    +    K+     +  D  +
Sbjct: 607 WAIDPEDYKADVLFIFENGRAVRVALAGYVTKTNRKRLKNAIYGGSKLLYAQVLKEDRDI 666

Query: 662 AVVGENRKLLIFS 674
           A+V  + +L+ F+
Sbjct: 667 ALVSSDYRLMSFN 679


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 228/560 (40%), Gaps = 85/560 (15%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           ++E+PYQV K++L+EKIAELI  K+I  + +I D S ++   +     R    ++++  +
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEVVLNHL 60

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           + L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++    R  I
Sbjct: 61  YSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTHI 119

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPV--------------------------------- 416
           L+GL +A  NIDE+IAIIRN    +                                   
Sbjct: 120 LEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLG 179

Query: 417 -MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               ++ L+  QV+AIL LRL  L  +   ++  E   LL +   +  +L+S ++    I
Sbjct: 180 IQGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVI 239

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ EVK  F              E++ A      + +I +E + V +S+ G+++    
Sbjct: 240 REELEEVKAQFGDD--------RLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPL 291

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRG 585
                 +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L   S   
Sbjct: 292 TDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGA 351

Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            G  I  ++ L  N+ I        Y+    +++ ++ G    +  +E       G   L
Sbjct: 352 RGRPIVNILPLQENERITAILPVSAYEEDKFVIMATADGIVKKIALTEFSRPRSNGIIAL 411

Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK------- 693
            +  E+++  V    G + + +     +++ F+ + +  M R   GVR            
Sbjct: 412 NLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISD 471

Query: 694 -------------------DGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKR 733
                              D  I  V+   + +     + +    Y +           R
Sbjct: 472 DESAVEIEEISDDNAETALDLNIDKVVSLVVPKSEGAILTATQNGYGKRTQLSEYPTKSR 531

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
              G +  K   R+GK +++
Sbjct: 532 NTKGVISIKVSERNGKVVAA 551



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 88/554 (15%), Positives = 192/554 (34%), Gaps = 82/554 (14%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+E++ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 80  GQPRLFNLKEIIEAFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 136

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 137 IRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLGIQGEQYYLSPAQVNAIL 196

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 197 ELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 256

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 257 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 312

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 313 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 363

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   ++ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 364 ENERITAILPVSAYEEDKFVIMATADGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 423

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 424 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISD 483

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V  S   +L  +  G     + SE    +R  K  + +   E
Sbjct: 484 DNAETALDLNIDKVVSLVVPKSEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 543

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-YKDGGISDVIC 702
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL     D  +  +  
Sbjct: 544 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVGIVGRNTQGVRLIRTADDEHVVSLER 603

Query: 703 FKICEGLTWIDSAG 716
               +    ++ +G
Sbjct: 604 VCDADEEDSLEESG 617


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 196/679 (28%), Positives = 338/679 (49%), Gaps = 27/679 (3%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +++   +   V A  +   LE  Y+ YA+ST   RA P++ DGFKP HR++++ M +MGL
Sbjct: 17  TDNVIGLHSEVTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGL 75

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI--DG 123
             G   +KSA IVG+   KL+PHGD ++Y+++VRLA        P +  +GNFG      
Sbjct: 76  LKGER-QKSANIVGQ-TMKLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGD 133

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
            + AA RYTEA+++ +   I + +D+D VDF D+Y+    EP + P+ FPN+L +   GI
Sbjct: 134 LTYAASRYTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGI 193

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
            V MA+ I   N+ E+C A +  +++P      LLEY+  PDF TGG I+  RE +    
Sbjct: 194 GVAMASDICGFNLNEVCTATMHFLEDPSC---DLLEYMPMPDFSTGGEIIYRREEMERII 250

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G G F++R+RW           I V EIPY  +   +I++I +L    ++  + DIRD
Sbjct: 251 ETGLGSFQIRSRWR---WVPEERIIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRD 307

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E+      +     R +DP+ LM  ++  + ++  F  N NVL  G  P+VM +  IL E
Sbjct: 308 ETDLSGLRIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGY-PRVMGVRQILHE 366

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSR 420
           W+A R +   RR +F +     R+ +L GL    L+ID+ IAIIR    E +  P ++  
Sbjct: 367 WVAWRIQSTRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMRG 426

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           F + E Q + +  L+LR++ +        ++  L AE  +++ +L+S       I  E+ 
Sbjct: 427 FDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEILSSEDNIKKVIRDELA 486

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            V + +        RRT   E S        +  +E+ P+T+++S  G+++ +    +  
Sbjct: 487 AVNKKYVMP-----RRTGRIEPSDV-IEVSLEPEVEEYPVTIMLSREGYLKKMTDRVLRK 540

Query: 541 SA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN 597
           +A L +K+GD   I   +  T  +L+ +   + Y          +    G  +   ++++
Sbjct: 541 AAELKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLATDLEMD 600

Query: 598 HNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
            ++ ++      D    +L V   G A  V  +  +  T + +    +    K+     +
Sbjct: 601 PDESVIWVIDPEDYKADVLFVFENGRAVRVALAGYVTKTNRKRLKNAIYGGSKLLYAQVL 660

Query: 657 TGD-HVAVVGENRKLLIFS 674
             D  +A+V  + +L+ F+
Sbjct: 661 KEDRDIALVSSDYRLMNFN 679


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/650 (23%), Positives = 261/650 (40%), Gaps = 111/650 (17%)

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
               ++NPE++ ++LLE + GPDFPTGG I+  R  I  ++  GRG   V+ +  +E++ 
Sbjct: 2   LYIYVNNPEVTFDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLP 60

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +    IV+ EIPYQV K +LIEKI EL+  KRI  + +IRDES +    V+    R+ + 
Sbjct: 61  QDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEA 120

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             ++  I  L+ + + F +N  VL+  R   +M L  I+  ++  R+EVL RR+ FR++ 
Sbjct: 121 SFILNQILGLTPLRSSFSVNTLVLNNNRPA-LMSLKEIITAFVDFRKEVLIRRTEFRLRK 179

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------------------- 420
              +  I  GL IA L+IDE+I IIR    P                             
Sbjct: 180 TREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSA 239

Query: 421 -------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                  + LTE Q+ AIL+++L+ L  LE+ ++++EL +++   ++  + L SG++   
Sbjct: 240 SFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMK 299

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +I   ++E K  F+        R T  E   +D     + +I +E + + ++  G+I+ +
Sbjct: 300 EIKNNLQETKNRFAVP------RKTSIE--ESDADIEAEDLIPQEDMVITVTMNGYIKRV 351

Query: 534 KSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SG 583
           K                   KE D +      +T    L  S  G+ Y L    L     
Sbjct: 352 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEP 411

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
              G A+  +  L+  + I          D    ++  ++ GN      ++       GK
Sbjct: 412 TARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAYGNIRRNSLADFHYIPSNGK 471

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVRLQSYKDGG 696
             +K+   +K+  V      DHV +     K + F +  + +  SR   GVR        
Sbjct: 472 IAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKL--VK 529

Query: 697 ISDVICFKICEGLTW--------------------------------------------- 711
              VI   I  G+                                               
Sbjct: 530 NDSVISMTILNGIGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLK 589

Query: 712 --------IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                   +      + +  +     +  RGGVG        R+G  ++S
Sbjct: 590 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVVAS 639



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 30/239 (12%)

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSAL 543
             +   D G +  +    +  D   L   + +     V       +R  KS + D +  +
Sbjct: 471 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSD-----VRQFKSRNSDGVRGI 525

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL---------LI 594
              + DS+      +     + ++T+ K   L        +  G AI           L 
Sbjct: 526 KLVKNDSVISMTILN----GIGVATETKELYLKV---PLAKRLGTAINNSIDSKLEKTLN 578

Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           DL  + ++      +    +L ++  G        E     R G     + +  +   VV
Sbjct: 579 DLGIDNELFLKLAVNEE-FILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRNGNVV 637

Query: 655 KV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
                  GD++ ++ +  KL+  S+++I    R  +GV L  +K      V+     E 
Sbjct: 638 ASFPVEQGDNIMLITDKGKLIRISVNEIRIAGRSTQGVTL--FKTESREKVVSVAKIED 694


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 277/395 (70%), Positives = 348/395 (88%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              F+K A+IVGEV+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA
Sbjct: 5   DIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAA 64

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P  FPNLLANG+SGIAVGMA
Sbjct: 65  MRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMA 124

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           TSIPSHN  E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRG
Sbjct: 125 TSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRG 184

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           GFRVRA+W  E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED
Sbjct: 185 GFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 244

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           +RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HR
Sbjct: 245 IRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHR 304

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           REVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV
Sbjct: 305 REVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQV 364

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +AILN+RLR+LRKLEE++I+ E D L  EK +I++
Sbjct: 365 EAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEA 399


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/767 (24%), Positives = 362/767 (47%), Gaps = 51/767 (6%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +N +   +   L E YL YA+  IKERAI  + DGFKP HR+++  + E  L       K
Sbjct: 665  DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYNKR--TK 721

Query: 75   SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYT 132
            SA IVG  +  L+ HGD S+Y++LVR+AQ     YP ++G+GNFG     S   A  RYT
Sbjct: 722  SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            EA  + + +    G++++AVDF   ++ E  EP++ P+ FPN+L N   GIAVGMA++ P
Sbjct: 781  EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            S N++E+C+  +A I +  I +     Y++ PDF TGG IV   + + + Y  G+G   +
Sbjct: 841  SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR---DESAEDV 309
            RA++ V++       I+VTEIPY   +  +++ I  L    +  ++ +I    D +    
Sbjct: 898  RAKYEVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKG 952

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
              +     ++ + +LLME ++  + ++  + LNMN++ + ++P+V+ +  IL EWL  RR
Sbjct: 953  MSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRR 1012

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTE 425
              + R S++  +  + ++ +L    I   +ID ++ I    I ++D  K + +  F + +
Sbjct: 1013 MCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLY-FKIDQ 1071

Query: 426  NQVDAILNLRLRSLRKLE-EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             Q + + N++L+ L K       + ++  L  E   + ++ N   +  N I  +++ +++
Sbjct: 1072 EQAEYVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRD 1131

Query: 485  IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
             +        R+T    V      TL+   IE    T+V++ + +I+  +  S    +  
Sbjct: 1132 KYKIP-----RKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQK 1183

Query: 545  FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLID--LNHNQ 600
             K+ D +      +  D +LL +  G         L   +   +G+ +  L+   L +++
Sbjct: 1184 LKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDE 1243

Query: 601  DIVTAFVYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             ++      +    ++ V   GN   ++  +      +       +++ K+  +  +T D
Sbjct: 1244 KVIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDD 1303

Query: 660  -HVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK---DGGISDVICFKICEGLTWID 713
             ++ +V +  K LI +  QI    SR  +GV         +  I  +I   + +      
Sbjct: 1304 TNILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKT 1363

Query: 714  SAGRSYNRSENDL---------LGWLGKRGGVGSLVPKGFPRSGKFL 751
               +S     +D+             G R   G+ +     +  K +
Sbjct: 1364 EKSKSKFIMLDDIAPNGKQSMTEYLKGNRNTQGNFIYNTRQKHDKVI 1410


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/655 (29%), Positives = 327/655 (49%), Gaps = 27/655 (4%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           + YA+S    RA P++ DGFKP HR++++ M +MGL  G   +KSA IVG+   KL+PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSANIVGQ-TMKLNPHG 57

Query: 91  DQSVYDSLVRLAQPF-VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGV 147
           D ++Y+++VRLA        P +  +GNFG       S AA RYTEA+++ ++  I + +
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF D+Y+    EP + P+ FPN+L +   GI V MA+ I   N+ E+C A +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            +P+     LLEY+  PDF TGG I+  RE + +    G G F++R+RW      R    
Sbjct: 178 QDPDC---DLLEYMPMPDFSTGGEIIYRREEMEKIIETGLGSFQIRSRWRWIPEER---I 231

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I V EIPY  +   +IE+I +L    ++  + DIRDE+      +     R +DPD LM 
Sbjct: 232 IEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLKRGVDPDKLMA 291

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            ++  + ++  F  N NVL  G  P+VM +  IL EW+  R E   RR +F +     R+
Sbjct: 292 KLYRSTTLQDSFSCNFNVLVDGY-PRVMGVRQILHEWVKWRIESTRRRINFDLGKKSERL 350

Query: 388 EILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
            +L GL    L+ID+ IAIIR    E +  P ++  F + E Q + +  L+LR++ +   
Sbjct: 351 HLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMKGFDIDETQAEFVAELKLRNINEEYI 410

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
                ++  L +E  +++ +L+S +     I+ E+  V + +        RRT   E   
Sbjct: 411 LNRTKDIAKLESEIAELEEILSSEENIKKVISDELAAVNKKYVMP-----RRTGRIEPHE 465

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRI 563
                  +  +E+ P+T+++S  G+++ +    +  +  L +K+GD   I   +  T  +
Sbjct: 466 V-IEVSLEPEVEEYPVTIMLSRDGYLKKMTDRVLKKATTLKYKDGDKPFIEFPSSNTHEL 524

Query: 564 LLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSK 620
           L+ +   + Y          +    G  +   +++  ++ ++      D    +L V   
Sbjct: 525 LVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLEMEPDESVIWVIDPEDYKADVLFVFEN 584

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           G    V  S  +  T + +    +    K+     +  D  +A+V  + +L+ F+
Sbjct: 585 GRVVRVALSGYVTKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMNFN 639


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/342 (47%), Positives = 242/342 (70%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  
Sbjct: 61  IGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ + 
Sbjct: 121 ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSKNPDITLPELVEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETS 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           ++L+ +++  + ++T F +N+  L  G+ P+V+ L   L+ +
Sbjct: 300 NVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHY 340


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/522 (27%), Positives = 274/522 (52%), Gaps = 20/522 (3%)

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G  AAA R TEA ++ +A  +L+ +D++ V+F  T N+   EPVV P+ FPNLL NG++
Sbjct: 1   MGTQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGST 60

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GI+ G AT IP H++ E+ +A +  ID P  +++ LL  + GPDFPTG  I++  + I +
Sbjct: 61  GISAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTG-GIIQGIDGIKK 119

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  G+G   +R +  +E V  G   IV+TEIPY+V K+ L++K+ EL + K++  + ++
Sbjct: 120 AYETGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEV 179

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDE+      ++    + ++ + ++  ++  +D++  +  NM  ++    P +M L  IL
Sbjct: 180 RDETDRTGLRIVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNR-RPTLMTLPKIL 238

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
             ++ H++EV+ RRS + ++  + R  I++GL  A   +D++I  IR        K  + 
Sbjct: 239 DAYIGHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLS 298

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
           ++F  TE Q +AI++L+L  L   +   ++ E D L  +  ++ S+L S K+    I  +
Sbjct: 299 AKFGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLLQVIKTD 358

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR---SLKS 535
           ++ VK+ +S        R    E    +     + MI +E + V ++  G+++       
Sbjct: 359 LKRVKKTYSDD------RRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 412

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLL 593
           ++ +      KEGD L      +TT+ +LL ++ G    LP   +     +  G+ +  +
Sbjct: 413 NASNGKDFGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANI 472

Query: 594 IDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEI 631
           + L+ ++ I+   V     +    ++ V+  G     E ++ 
Sbjct: 473 VSLDRDETIIWVTVVPNFEEEKRFIVFVTRNGMIKKTELNQY 514


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/342 (48%), Positives = 241/342 (70%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E 
Sbjct: 121 ILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETS 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +
Sbjct: 300 HVILNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHY 340


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/385 (41%), Positives = 257/385 (66%), Gaps = 3/385 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S +   + + +K V++   ++  +L YA+S I  RA+P+ +DG KPV RRI++ M E  
Sbjct: 1   MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +    A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF  R PL+ G GNFG++DGD 
Sbjct: 61  MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEAR++++A  +++ +D++ V+F D Y+  + EP V PS++PNLL NG++GIAV
Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +A  A +DNP+I++ +L++Y+ GPDFPTGG I+     + ++Y  
Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  + E  +    +++TEIPYQV K+ LIE+IAE++  K I  + D+RDES
Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 ++    +  +P + + +++  + ++T F +NM  L  G+ P+++ L   L  ++
Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEIL 390
           AH+ E++ RR+ F ++ +     I 
Sbjct: 358 AHQIEIITRRTQFDLEKLKLDAYIR 382


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/441 (34%), Positives = 273/441 (61%), Gaps = 5/441 (1%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G      F+KSA+ VG VIG 
Sbjct: 1   MGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VR++Q +  R  LI   GN G++DGD  AA RYTEAR++ ++  +L+
Sbjct: 61  YHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   +++  SEP V P++FPNLL NG++GI+ G AT IP HN+ EI EA + 
Sbjct: 121 DIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIK 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ G+G   VR++  +E++  G 
Sbjct: 181 RLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGR 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + EIPY+V K+ L++++ EL I K+I  + ++RDE+      +     +  + + +
Sbjct: 240 KQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGV 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F  +D++  +  NM  ++    P++M +  +L  ++ H++E++ +RS + ++    
Sbjct: 300 LNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARA 358

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+ A   +DE+I +IR        K  + +++  +E Q +AI++L+L  L   
Sbjct: 359 RQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNT 418

Query: 443 EEYQIKSELDNLLAEKEKIDS 463
           + ++++SE  +L  +   +  
Sbjct: 419 DIHELQSEAKSLAEQLVFLKK 439


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 176/406 (43%), Positives = 279/406 (68%), Gaps = 8/406 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT   I+  R  I + Y  GRG  R
Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309
           +RA W  E+       +V+T +P+QV  ++++E+IA  +  K++P+++D+RDES  +   
Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+V+ P++  +D + +M  +F  +D+E  + +N+N++ +   P V  L  IL EWLA RR
Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
           + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP
Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/342 (48%), Positives = 241/342 (70%), Gaps = 2/342 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI + 
Sbjct: 121 ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDG 180

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+ +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 181 VLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETP 239

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
            G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + 
Sbjct: 240 SGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANA 299

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            +++ +++  + ++T F +N+  L  G  P+V+ L   L+ +
Sbjct: 300 HVILNNLYKQTALQTSFGINLLALVDGE-PKVLNLKQCLEHY 340


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 169/373 (45%), Positives = 248/373 (66%), Gaps = 6/373 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E + ++ L   +++ YL YA+S I  RA+PD+RDG KPV RR+++AMSE+GL   +A+KK
Sbjct: 36  ERILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLYAMSELGLRHNSAYKK 95

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVGE +GK HPHGD S+YD++VRLAQ +  RY L+ GQGNFG++DGD AAA RYTEA
Sbjct: 96  SARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFGSVDGDRAAAMRYTEA 155

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ ++ EL+L  +DED V++   ++E   EP+  PS  PNLL NG++GIAVGMAT+IP H
Sbjct: 156 RLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNGSTGIAVGMATNIPPH 215

Query: 195 NVQEICEAALALIDNPEISIE----KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           N++E+ +    L++      E     L+E + GPDFPTGG I+  R+ I ++YR GRG  
Sbjct: 216 NLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQIL-GRQGIYDAYRTGRGKV 274

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            VR R  VE+  RG   ++VTEIPY V K+ LIE + +    K I  ++DIRDES  +  
Sbjct: 275 IVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVIDGIQDIRDESNREGM 334

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++   +R  +PDL+M  ++  + ++  F +    L   + P+++PL  IL  +L++RR+
Sbjct: 335 RIVLELSRDANPDLVMRQLYKRTQLQATFGVINLAL-DRQTPRLLPLASILGLFLSYRRD 393

Query: 371 VLFRRSSFRMQAI 383
           V+ RR+ FR+   
Sbjct: 394 VVRRRTQFRLNKA 406


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
          Length = 1159

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 197/815 (24%), Positives = 332/815 (40%), Gaps = 156/815 (19%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V+   L       YL+YA+S I  RAIPD+RDG KPVHRRI++AM E+GL     FKK 
Sbjct: 118 RVEDTELYDEAYNSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNKPFKKC 177

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGEV+GK HPHGD +VYDSLVR+AQPF  R  L+ G GNFG++D D AAA RYTE R
Sbjct: 178 ARVVGEVLGKFHPHGDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMRYTECR 237

Query: 136 MTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +T+   E +L  +  D VD++ T++E                        VG+A++IP H
Sbjct: 238 LTRAAGEALLADIGPDTVDWQPTFDESQ----------------------VGLASNIPPH 275

Query: 195 NVQEICEAALALIDNPEISIEKLL------------------EYIIGPDFPTGGIIVESR 236
           N+ E+  A  ALI +P ++ E+LL                  E +   +   G ++V  +
Sbjct: 276 NLGEVVSALRALITDPRVTTEELLKHVRGPDFPTGGEVVVGPELLQVYETGRGSVVVRGK 335

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGS------------------------------- 265
            +I        GG         +EV   +                               
Sbjct: 336 ATIERVGGGSGGGGGGDDGGGNDEVATAAGRTRRRRGAAAAAAAAQAVDEDIGGGRGGSG 395

Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +V+TE+PYQV KS L+  IAELI +K++    D+RDES      V+    +     +
Sbjct: 396 RELVVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVKKGYSGKV 455

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++  + ++  F  N   L   +  Q M L  +L  +L  R +V+ RRSS  ++A  
Sbjct: 456 VLAQLYNSTRLQVNFHYNCTSLLNTKPLQ-MGLKDMLLAFLDFRCDVVQRRSSASLRAAQ 514

Query: 385 RRVEILKGLLIAYL---NIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRS 438
           +R+ +++G L        +D ++A +R  +     +  +V++  L+E Q +AIL L LR 
Sbjct: 515 QRLHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHGLSEEQAEAILGLTLRR 574

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L  LE  ++  E   L     ++  +L +       +  E   +   F +      RRT 
Sbjct: 575 LTGLEAAKLDQERRELQQSIARLGDILANRTTLLAVVEQEAEALAAAFPEP-----RRTA 629

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDS 550
                        ++++  +P  V+ S RG++R            ++   S +  + GD 
Sbjct: 630 LVAAEDVPATPSLESLVPPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIRLRSGDQ 689

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN--QDIVTAFVY 608
           L   +     D +++++ DG+ +      +        +            + +      
Sbjct: 690 LASLVAGSDRDLLMVVTPDGRMFKTRTAAVPPSSSSASSASPTAAAASGGTESVGRMKEV 749

Query: 609 DSTCK---------------------LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS- 646
           +                         L++ +  G    +        ++KG   + + S 
Sbjct: 750 EDAGSEAKEEEEVEGEDVGGAVAGPCLVLCTRGGRIKRLALKN-RRESKKGIMVMGLESS 808

Query: 647 -------------------------------EEKMKLVV--KVTGDHVAVVGENRKLLIF 673
                                          EE++      +  GD V V     ++L+F
Sbjct: 809 SSKATGDGRDSSSSSSARDAASKKKGPDEAGEEELCWAALSRSPGDVVVVASAEGQVLLF 868

Query: 674 SIDQIPEMS----RGKGVRLQSYK-DGGISDVICF 703
               +            +R+   + +  I+D+   
Sbjct: 869 PATDVRVSGPQSAGTHAMRMSKRRPNDRIADITVL 903


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 233/324 (71%), Gaps = 1/324 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++
Sbjct: 240 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQV 354
             + ++T F +N+  L  G+   +
Sbjct: 300 KQTALQTSFGINLLALVDGQPKVL 323


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 161/403 (39%), Positives = 265/403 (65%), Gaps = 2/403 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G  F   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +A L  IDNP+I++ +L++YI GPDFPTGGI ++  + I ++Y  G+G   V
Sbjct: 181 PHNLGEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGI-IQGLDGIKKAYESGKGKIVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R++   EE+  G   ++VTEIPY+V KS L+++I EL   K++  + ++RDE+      +
Sbjct: 240 RSKVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                + ++ + +   ++  SD++  +  NM  +S G  P++M +  I+  ++ H+ EV+
Sbjct: 300 AIELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISDG-RPKLMGIKQIIDSYINHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             R+ F ++  ++R+ I++GL+ A   +DE+IA+IRN    K 
Sbjct: 359 ANRTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKE 401


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 211/832 (25%), Positives = 361/832 (43%), Gaps = 114/832 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
             V+ + L   L + ++ YALS I  RA+PD RDG K VHRRI+ AM  M L     ++K
Sbjct: 96  HTVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRK 155

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            A++VG+V+GK HPH D+SVYD+L RL+Q F+ R PL+ G GNFG+ D D  AA RYTE 
Sbjct: 156 CAKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTEC 214

Query: 135 RMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R++  +E  +L  + ++ VD    ++  + EP V PSK P LL NG+SGIAVG+AT+IP 
Sbjct: 215 RLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPP 274

Query: 194 HNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           HN +EI +AA  +  N   +  E+LL  + GPDFPTGG IV S +++ + Y  G+G   +
Sbjct: 275 HNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIML 334

Query: 253 RARWCVEEVGRGSW--------------------------CIVVTEIPYQVQKSRLIEKI 286
           +A++  EE  +                              I+V E+PY V+ S ++  I
Sbjct: 335 QAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAI 394

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLN 342
           ++ +    +  + D+RDES      ++    + +    + + +M+ +  +S + + F  N
Sbjct: 395 SKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCN 454

Query: 343 MNVLSMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
              L      P  + L   LK WL  R + + +R   + +    R+ I+KG  IA+  ID
Sbjct: 455 FIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514

Query: 402 EIIAIIRNEDKPKPVMV-----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
           +I+ ++RN       M          L   Q  A+L + L  L ++E  +I  E   L  
Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF-------CEVSRADKAT 509
             ++ + +L      ++ I  E+  +++   K   +  R TT               +  
Sbjct: 575 SIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDY 634

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR--ILLLS 567
             +     E     IS       + +   +      K+   L+     +  D   +++++
Sbjct: 635 PPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQNPDLEGH---NPHDEPSLIVMN 691

Query: 568 TDGKAYTLPAGN----------LLSGR-----------GHGEAIQLLIDLNHNQDIVTAF 606
             G    +   N          + S R           G GE   +  ++  ++  +   
Sbjct: 692 NYGLMQRIKLDNSFFRSQKSRYIPSSRLQQPYQGQYSIGEGENEDVAPEITQSELQLHYG 751

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSSEEKM------------- 650
           V       +++S  G  F++  S +    + G +    +K+ S E +             
Sbjct: 752 VCRPGDSCMMISKDGTCFVLPVSALRLCNK-GYSIWKQVKLKSPENVEYFTVTSKLLFSQ 810

Query: 651 -----------KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG-------VRLQSY 692
                      KL++  T  ++ ++  + ++ I S    P      G       +RL+ +
Sbjct: 811 DQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFPS-----GHLYKNPLIRLRLW 865

Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSE--NDLLGWLGKRGGVGSLVPK 742
            +  +  +     C          R Y+     NDLLG +  RG     + K
Sbjct: 866 NNKELKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIK 917



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 72/202 (35%), Gaps = 28/202 (13%)

Query: 559  TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVV 617
            TT  ++L+ TDG+   +   +  SG  +   +  L   N+ +   + A        + V 
Sbjct: 828  TTSYLVLIFTDGQVGIISTKHFPSGHLYKNPLIRLRLWNNKELKPIFAMFCCPDDDIFVG 887

Query: 618  SSKGNAFIVEESEIIA----NTRKGKTFLKVSSEEK------MKLVVKVTGD-------- 659
            + +G +  V  ++++       +  K  +K+   +K      ++ +  V  D        
Sbjct: 888  TLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKENDKVTCGAILESLSNVENDAKEICRFE 947

Query: 660  -----HVAVVGENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICE-GLTW 711
                 H+ ++ E+ +  +  I ++ ++ R  G G  +       I  +    + +     
Sbjct: 948  NYDNRHLLLLSEHGRAKLLHISEL-QLRRHGGYGYNITRQSSSTIEGLYAATVVDTDDDI 1006

Query: 712  IDSAGRSYNRSENDLLGWLGKR 733
            +  +       ++     +  R
Sbjct: 1007 LLVSKDGLLARKDPFTLPVASR 1028


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 172/388 (44%), Positives = 259/388 (66%), Gaps = 3/388 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +     +++ A+ +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G
Sbjct: 1   MEENIFSSNQDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P + GQGNFG++DGD 
Sbjct: 61  VGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDGDG 120

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAV
Sbjct: 121 AAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGIAV 180

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H++ E+    L L+D+ E+ +E ++ +I GPDFPTGGII   ++ I+E+Y+ 
Sbjct: 181 GMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIF-GKKGIIEAYKT 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG  ++RA+  +E+       IVV E+PYQV K++L   IA+L+  K I  + ++RDES
Sbjct: 240 GRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRDES 298

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             D   ++    R    ++++ ++F  + ME  F + M  ++    P+V  L  +LK +L
Sbjct: 299 DRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKE-PKVFSLLELLKLFL 357

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGL 393
            HR+ V+ RR+ F +Q    R  IL+G 
Sbjct: 358 NHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 158/324 (48%), Positives = 231/324 (71%), Gaps = 1/324 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 181 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++
Sbjct: 240 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 299

Query: 331 MLSDMETRFPLNMNVLSMGRVPQV 354
             + ++T F +N+  L  G+   +
Sbjct: 300 KQTALQTSFGINLLALVDGQPKVL 323


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 158/326 (48%), Positives = 225/326 (69%), Gaps = 1/326 (0%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
           +V++   +   YL YA+S I  RAIPDLRDG KPVHRRII++M E G+    A++KSA+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+V+G  HPHGD ++YD+LVR+AQ F    PLI GQGNFG++DGDSAAA RYTE+R+ +
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           VA  +   +D++ VDF D Y+ ++ EP V P++FPN+L NG  GIAVGMAT+IP HN+ E
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A  ALI+NP+++ E+L+EYI GPDFPTGGI++  R    ++Y  GRG   +RA+  V
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE+ +  + IV+ EI YQV KS +IEKIAE +  K+I  +  ++DES  +   V+    R
Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKR 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMN 344
               +++M  ++  + M+T F  NM 
Sbjct: 324 DATAEVVMNQLYRFTPMQTYFGCNML 349


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 195/320 (60%), Positives = 256/320 (80%)

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           GLLIAYLNIDE+I IIR ED+PKPVMV+R+ LT+NQV+AILN+RLRSLRKLEE++I+ E 
Sbjct: 3   GLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRKEF 62

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L  EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+  +Q
Sbjct: 63  DELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQ 122

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           QAMIEKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T GK
Sbjct: 123 QAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGK 182

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
           A+TL    L  GRGHGE +++++D++++Q ++TAFV+D + K L+VS+ GN F+V E+E+
Sbjct: 183 AFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEAEL 242

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691
           IANTRKGK  + V+  E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRLQ 
Sbjct: 243 IANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRLQR 302

Query: 692 YKDGGISDVICFKICEGLTW 711
           YKDGGISDV CF I +GL W
Sbjct: 303 YKDGGISDVRCFAISDGLVW 322


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 161/385 (41%), Positives = 246/385 (63%), Gaps = 4/385 (1%)

Query: 1   MGVDNISNSNTLVEENV-KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  ++ +N   L+ + V K  S+   LE  ++ YA+S I  RA+P+ RDG KPV   +++
Sbjct: 1   MNPNDKNNIKELLNKTVVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPV-TWVLY 59

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
                GL     ++KSA+IVG V+GK HPHGD ++Y+++VR+AQPF  RY LI G GNFG
Sbjct: 60  GAYTSGLTHDKPYRKSAQIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFG 119

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGDSA A RYTEAR+++++  +L+ +D+D VDF D Y+  + EP+V PS FPNLLANG
Sbjct: 120 SIDGDSAGAMRYTEARLSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANG 179

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+      L+ N   +IE+L E+I GPDFPT   I+     I
Sbjct: 180 SSGIAVGMATNIPPHNLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGI 238

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            E +  GRG   VRA+  +EE+      IV+T+IPY V K+ LI KIAEL+  ++I  + 
Sbjct: 239 NEYFNTGRGSVSVRAKSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIA 298

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D+RDES  +   ++    R + P++L+  ++  + ++T F + M  L   + P+V+ L  
Sbjct: 299 DLRDESNREGIRIVIETKRDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQ-PKVLNLKE 357

Query: 360 ILKEWLAHRREVLFRRSSFRMQAID 384
            L+ ++ H+ ++L R+++F ++   
Sbjct: 358 ALQIYIDHQFDILLRKTNFELKKAK 382


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 230/322 (71%), Gaps = 1/322 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +  +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNHELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQV 354
           + ++T F +N+  L  G+   +
Sbjct: 300 TALQTSFGINLLALVDGQPKVL 321


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 231/322 (71%), Gaps = 1/322 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           + ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 181 TNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVPQV 354
           + ++T F +N+  L  G+   +
Sbjct: 300 TALQTSFGINLLALVDGQPKVL 321


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 161/319 (50%), Positives = 230/319 (72%), Gaps = 1/319 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI
Sbjct: 122 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 181

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           + ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE
Sbjct: 182 TNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTE 240

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  
Sbjct: 241 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQ 300

Query: 333 SDMETRFPLNMNVLSMGRV 351
           + ++T F +N+  L  G+ 
Sbjct: 301 TALQTSFGINLLALVDGQP 319


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 157/321 (48%), Positives = 229/321 (71%), Gaps = 1/321 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD
Sbjct: 1   DYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D 
Sbjct: 61  SAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDT 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+
Sbjct: 121 IDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPD 180

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VT
Sbjct: 181 ITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 239

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           E+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++ 
Sbjct: 240 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 299

Query: 332 LSDMETRFPLNMNVLSMGRVP 352
            + ++T F +N+  L  G+  
Sbjct: 300 QTALQTSFGINLLALVDGQPK 320


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 159/314 (50%), Positives = 228/314 (72%), Gaps = 1/314 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  
Sbjct: 240 LPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVL 346
           + ++T F +N+  L
Sbjct: 300 TALQTSFGINLLAL 313


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 157/320 (49%), Positives = 229/320 (71%), Gaps = 1/320 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD 
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
           +I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE
Sbjct: 181 TIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 240 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 299

Query: 333 SDMETRFPLNMNVLSMGRVP 352
           + ++T F +N+  L  G+  
Sbjct: 300 TALQTSFGINLLALVDGQPK 319


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 226/322 (70%), Gaps = 2/322 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
            VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++  
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 316 KNRSLDPDLLMESIFMLSDMET 337
             R    ++++ +++  + ++ 
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQV 328


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 148/630 (23%), Positives = 284/630 (45%), Gaps = 56/630 (8%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF   ++E + EP V P + PNLL NG  GIAVGM TSIP HN+ E+ +A +A ++
Sbjct: 36  KNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLE 95

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG--SW 266
           +  ++ E LL YI GPDFPTGG++V +++ I   Y  G G  ++R +   E   +     
Sbjct: 96  DESVANEDLLTYIQGPDFPTGGLVV-NKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKD 154

Query: 267 CIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            +V+TEIPY        + +  +  L+ +K+   + DI +ES+++   ++    +  D +
Sbjct: 155 KLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELKKGTDIE 214

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L   ++  + +E  F +NM  +  G  P+ + L  I+         ++ R+    +  +
Sbjct: 215 RLKNLLYKKTKLEDTFGVNMLAIVDG-RPETLSLRDIIAHHTEFHYGLVKRKYQTLLSKL 273

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---------------------VSRFS 422
             + E+ +GL+ A   ID II I+R     K                          + S
Sbjct: 274 YDQREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFKSSESMIEACKLS 333

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            TE Q +AIL+LRL  L  LE   ++ E + ++A+  + + +L++       +  ++ ++
Sbjct: 334 FTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMKQDLMKI 393

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ +       R R T  E     +A  ++  +++E +  V+   G+ ++    +   + 
Sbjct: 394 KKEYQ------RERRTVVE--DGAEAVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQ 445

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN-HN 599
            +       K  +    TD+I + +  G  + +   ++ +G  +  G  I  L + +  +
Sbjct: 446 ENASRD--YKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSD 503

Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
           + I+     ++     L   + +G   IV  +E    T++  +  K+S  + +  V  + 
Sbjct: 504 EAIIAVLAAEAMTHDSLFFATEQGMLKIVSGTEFQ-VTKRTVSATKLSDGDALLSVKPLK 562

Query: 658 G-------DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGL 709
                   D V +  +    L FS++++PE  +G  GVR        I         +G+
Sbjct: 563 TEGGLIKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDDILLHTYLMEADGI 622

Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           T +D  G+  + ++      L KR   GS 
Sbjct: 623 TSMDYKGKRLDFNKL----KLAKRDTKGSK 648


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 159/319 (49%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
            L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPH
Sbjct: 2   LLDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 62  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N
Sbjct: 122 DTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN 181

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+
Sbjct: 182 KDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIL 240

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ ++
Sbjct: 241 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 300

Query: 330 FMLSDMETRFPLNMNVLSM 348
           +  + ++T F +NM  L  
Sbjct: 301 YKQTALQTSFGINMLALVD 319


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 160/323 (49%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
            L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPH
Sbjct: 2   LLDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 62  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 121

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N
Sbjct: 122 DTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN 181

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+
Sbjct: 182 KDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIL 240

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ ++
Sbjct: 241 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 300

Query: 330 FMLSDMETRFPLNMNVLSMGRVP 352
           +  + ++T F +NM  L  G   
Sbjct: 301 YKQTALQTSFGINMLALVDGSRK 323


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 174/668 (26%), Positives = 310/668 (46%), Gaps = 46/668 (6%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 29  LTFALYSVSDRAIPSAYDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 88

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +++ 
Sbjct: 89  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELNDH 147

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E  EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 148 AVPMVPTFDGEWVEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 207

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L + I GPD+ +G   V     + E    GRG F VR    VE    G  CI +
Sbjct: 208 NMTDDRLCKLIPGPDWGSGA-SVVGTAGLREYITTGRGHFTVRGTISVE----GKNCI-I 261

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESI 329
           TE+P  V  + + ++I  L+ +  +  + D+ D +   +   ++    R  + + + + +
Sbjct: 262 TELPPGVASNTVQDRIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHNAEQIRDQL 321

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
             L+ +E+ F  ++  L   RVP+   +  ++  +L  R  V+  RS +R++ +  R  +
Sbjct: 322 LALTPLESTFAASLVALDENRVPRWWSVRDLIMAFLQLRDSVVLHRSEYRLEKVTARRHL 381

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           + GL+  +L+ID  +A+IR     D+ +  +  RF +   Q D +L+L+LR L KL+  +
Sbjct: 382 VAGLMKIHLDIDAAVAVIRGSETVDEARKGLQERFKIDAEQADYVLSLQLRRLTKLDVIE 441

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +++E + L AE  +++ L+ + + +   I  E+ E  ++F        RRT     +   
Sbjct: 442 LQAEAEKLDAEFAELNDLVTNPESRRKVIDKELVETAKLFKGPEY--DRRTVLDFDATPV 499

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
               +    E++  T    +   + S     +  S L +                    +
Sbjct: 500 SRGDEDGSRERKVNTAWRLDDRGVFSDSHGELLTSGLGW-------------------AV 540

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            +DG+          +G G    I+ +        +V + V      L +V+ +G    V
Sbjct: 541 WSDGRI------KFTTGNGLPFKIRDIPVAPDITGLVRSGVLPEGYHLALVTRRGKILRV 594

Query: 627 EESEIIANTRKGKTFLKVS---SEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE 680
           + + +      G     V      +++   + V    G+ +  + E     +  +  IP 
Sbjct: 595 DPASVNPQGVAGNGVAGVKLAADGDEVIAALPVSCANGEAILSIAEKSW-KVTEVADIPV 653

Query: 681 MSR-GKGV 687
             R G GV
Sbjct: 654 KGRGGAGV 661


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 158/313 (50%), Positives = 227/313 (72%), Gaps = 1/313 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVL 346
            ++T F +N+  L
Sbjct: 300 ALQTSFGINLLAL 312


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 153/588 (26%), Positives = 277/588 (47%), Gaps = 45/588 (7%)

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG +GIAVG++TSIP HN  E+ EA   L + P  ++E+L ++I GPDFPTGGI+  S 
Sbjct: 1   CNGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSH 60

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + +V+ Y  GRG   ++ +  +E++      IV+ EIPYQV K  LI++IAEL+   +  
Sbjct: 61  KDMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEK 120

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  D   ++    R  +P+ +++ ++  + ++   P+N+ VL  G+ P+ + 
Sbjct: 121 GISDLRDESDRDGIRIIVELKREANPEKVLKKLYQRTQLQKSIPINLTVLV-GKQPKTLS 179

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413
           L  +L E++ HR EV+ +R+ + +Q  ++R+ I++GLL A  N D +I I+R   +  + 
Sbjct: 180 LKEVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAEA 239

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           K  + S F L++ Q  AIL++RL     LE  ++ +E D L  + E+   +L+S +++  
Sbjct: 240 KFKLTSEFQLSDTQAQAILDMRLSRFTSLESEKLYNEADELRKQIERYREILSSEQEKIK 299

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
               EI E+ E +        R+T   E               +E   + + + G I + 
Sbjct: 300 VFINEIDELLEKYGD-----DRKTIVLEKDEGKLTF-------EENYIIAVLSNGKIINY 347

Query: 534 KSHSVDLSALHFK--------------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           K  + +      +               GD L       ++  I  ++ DG+     A +
Sbjct: 348 KIDNPEDREEKERIFNKVINEITSLILPGDYLVSIQEIKSSQPIAFITNDGRCIWSLAAD 407

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKG 638
           L  G G  + I      + N+ + TAF  +    +L +++  G    +   +I   ++  
Sbjct: 408 LPKGEGKLKYI------DENKIVGTAFKSEGEEDRLFLLTKNGIIKRMTFEDIFYKSQN- 460

Query: 639 KTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694
           +  + +  ++++  V+    DH   +A+      LLIF  +QI     + KGV      +
Sbjct: 461 QQIIPLQEDDEI--VMAFADDHPSYIAIYTAKADLLIFERNQIRVTGAKAKGVEGIDLDE 518

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           G       F +      +        +  N     + KR   G +  K
Sbjct: 519 GDYVK-GGFLVNSEEYILTITKNGQCKLVNKEEFPIKKRAQKGLMAVK 565



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 133/418 (31%), Gaps = 38/418 (9%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            KR+ ++E +        R++   +      +      F L+            +   R+
Sbjct: 207 EKRLHIIEGLLKALENADRVIEIVRGSKDSAEA----KFKLTSEFQLSDTQAQAILDMRL 262

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            +   L+       A        R    + +   ++++          IDE++    ++ 
Sbjct: 263 SRFTSLESEKLYNEADELRKQIERYREILSSEQEKIKVF------INEIDELLEKYGDDR 316

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL------- 464
           K   +      LT  +   I  L    +   +    +   +      + I+ +       
Sbjct: 317 KTIVLEKDEGKLTFEENYIIAVLSNGKIINYKIDNPEDREEKERIFNKVINEITSLILPG 376

Query: 465 --LNSGKQQW--NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
             L S ++      IA    + + I+S + DL +       +              +E  
Sbjct: 377 DYLVSIQEIKSSQPIAFITNDGRCIWSLAADLPKGEGKLKYIDENKIVGTAFKSEGEEDR 436

Query: 521 TVVISNRGWIRSLK-----SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST---DGKA 572
             +++  G I+ +        S +   +  +E D + +A  A      + + T   D   
Sbjct: 437 LFLLTKNGIIKRMTFEDIFYKSQNQQIIPLQEDDEIVMAF-ADDHPSYIAIYTAKADLLI 495

Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632
           +      +   +  G      IDL+    +   F+ +S   +L ++  G   +V + E  
Sbjct: 496 FERNQIRVTGAKAKG---VEGIDLDEGDYVKGGFLVNSEEYILTITKNGQCKLVNKEEFP 552

Query: 633 ANTR--KGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSRGK 685
              R  KG   +K+   +++ +   V   D V +     K+    ID   IP   R  
Sbjct: 553 IKKRAQKGLMAVKLQKGDELNICTSVNIEDEVILSTSGGKVFKMIIDDKRIPVAKRTA 610


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 184/735 (25%), Positives = 320/735 (43%), Gaps = 55/735 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           +      + V   S      +  L +AL ++ +RAIP   DG KP  RR+++ M +  L 
Sbjct: 6   DVPEQNPDLVLDQSADDYWNQYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLL 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
            G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD  A
Sbjct: 66  PGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAAEF-QRVKVIDGQGAFPRIQGDIPA 124

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R++     +   +D  AV    T++ E +EP   P+++P LL NG  GIA G 
Sbjct: 125 ADRYTEMRLSAPGAALTAELDNHAVPMVPTFDGEWTEPTWLPARWPVLLCNGAVGIAEGW 184

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G  +V     + E    GR
Sbjct: 185 ATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGR 243

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306
           G F VR    V     G  CIV TE+P  V  + + ++I  L+ +  +  + D+ D +  
Sbjct: 244 GQFTVRGTVSV----DGKNCIV-TELPPGVASNTVQDRIRALVESGELSGVADMSDLTDR 298

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R    + + E +  L+ +E+ F  ++  L   RVP+   +  ++  +L 
Sbjct: 299 RNGLRIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELISAFLH 358

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSL 423
            R  V+ RRS +R++ +  R  ++ GL+  +L+ID  +A+IR     D+ +  +  RF +
Sbjct: 359 LRDSVVVRRSEYRLEKVTARRHLVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQERFGI 418

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              Q D +L L+LR L KL+  ++++E + L AE  ++  L+ +   +   I  E+ E  
Sbjct: 419 DAEQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAELTELVANPDARRKVIDEELVETA 478

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           ++F         R T  +      +        +E       N  W R         S  
Sbjct: 479 KLFKGPE---FDRRTVLDFDATPVSAGADEDGPRERKV----NAAW-RLDDRGVFSDS-- 528

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603
               GD L       T+     + TDG+          +G G    I+ +        ++
Sbjct: 529 ---HGDLL-------TSGLGWAVWTDGRV------KFTTGNGLPFKIRDIPVAPDITGLL 572

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVK------ 655
            + V      L +V+ +G    ++ + +        G   +K+++ +    V+       
Sbjct: 573 CSGVLAPGHHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKLAAGDPEDAVIAALPVSC 632

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
             G+ +  + E     +  +  IP   R G GV    +  G  + +           I +
Sbjct: 633 ANGEALLSISEKSW-KVTEVADIPVKGRGGAGVGFHPFVKGEDAVLAA--------TISA 683

Query: 715 AGRSYNRSENDLLGW 729
            G    +        
Sbjct: 684 TGYVRGKKAVRADNR 698



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 8/125 (6%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
           + G       + +    R     +       +   V   G H+A+V    K+L      +
Sbjct: 543 TDGRVKFTTGNGLPFKIR--DIPVAPDITGLLCSGVLAPGHHLALVTRRGKILRIDPAAV 600

Query: 679 -PEMSRGKGVRLQSYKDGGISDVICFKI----CEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            P+ + G GV       G   D +   +      G   +  + +S+  +E   +   G R
Sbjct: 601 NPQGAAGNGVAGVKLAAGDPEDAVIAALPVSCANGEALLSISEKSWKVTEVADIPVKG-R 659

Query: 734 GGVGS 738
           GG G 
Sbjct: 660 GGAGV 664


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 206/407 (50%), Gaps = 19/407 (4%)

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
            L  +L EWL  R   + RR  FR+  ++ R+ +L GLL AYLN+DE+I IIR  + PK 
Sbjct: 1   NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA 60

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +++RF L+E Q D IL+ RLR L +LEE +++SE D L  E+ K+ +LL S  +    +
Sbjct: 61  ELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLV 120

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             E+    E +      G  R +        KA  +  ++  EP+TVV+S +GW+R  K 
Sbjct: 121 RAELIADAETY------GDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKG 174

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           H +D + L +K GD  K +    +    + + + G++Y++ A  L S RG GE +   + 
Sbjct: 175 HDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQ 234

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
                      + +     ++ S  G  F+V+  ++ A  + GK  L + +  K+ L   
Sbjct: 235 PPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRP 294

Query: 656 VTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKI 705
           V     + +A V    +LL+F I  +P++ +GKG ++          ++  ++D+    I
Sbjct: 295 VPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--I 352

Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +G T +  AG R+ +    DL  + G+RG  G+ +P+GF R    L
Sbjct: 353 GQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 399


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 159/315 (50%), Positives = 227/315 (72%), Gaps = 1/315 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSM 348
            ++T F +N+  L  
Sbjct: 300 ALQTSFGINLLALVD 314


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 156/319 (48%), Positives = 228/319 (71%), Gaps = 1/319 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLNMNVLSMGRVP 352
            ++T F +N+  L  G+  
Sbjct: 300 ALQTSFGINLLALVDGQPK 318


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 159/320 (49%), Positives = 229/320 (71%), Gaps = 1/320 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQV 354
           ++T F +N+  L  G+   +
Sbjct: 300 LQTSFGINLLALVDGQPKVL 319


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 159/320 (49%), Positives = 229/320 (71%), Gaps = 1/320 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVPQV 354
           ++T F +N+  L  G+   +
Sbjct: 300 LQTSFGINLLALVDGQPKVL 319


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 152/341 (44%), Positives = 216/341 (63%), Gaps = 6/341 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+E V  V L     E Y+AYA+S +  RA+PD+RDG KPVHRRI++AM EMGL     F
Sbjct: 78  VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K AR+VGEV+GK HPHGD +VY++LVR+AQ F  RYPL+ G GNFG+ID D  AA RYT
Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197

Query: 133 EARMTQVAELILQGVDEDA---VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           E R+       L          VDF   ++    EP + P++ P+LL NG+SGIAVGMAT
Sbjct: 198 ECRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +    +I+NPE ++++LLE + GPDFPTGG IV   + I+E+Y+ GRG 
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGR 316

Query: 250 FRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
             +R +  +E  +V      I++ E+PYQ  KS L+E+IAEL+  K +  + DIRDES  
Sbjct: 317 VVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDR 376

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
               V+    R  DP +++ +++  + +++ F  NM    +
Sbjct: 377 SGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVATGL 417


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 158/318 (49%), Positives = 227/318 (71%), Gaps = 1/318 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVP 352
           ++T F +N+  L  G+  
Sbjct: 300 LQTSFGINLLALVDGQPK 317


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 159/318 (50%), Positives = 228/318 (71%), Gaps = 1/318 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVP 352
           ++T F +N+  L  G+  
Sbjct: 300 LQTSFGINLLALVDGQPK 317


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 159/318 (50%), Positives = 228/318 (71%), Gaps = 1/318 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVP 352
           ++T F +N+  L  G+  
Sbjct: 300 LQTSFGINLLALVDGQPK 317


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 147/411 (35%), Positives = 254/411 (61%), Gaps = 6/411 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTSEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +D P  + E++++ + GPDFPTG  I++  + I ++Y  
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTG-GIIQGIDGIRKAYET 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL I K+I  + ++RDE+
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDET 295

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
                 +     +  + + ++  +F  +D++  +  NM  +     P++M +  +L  ++
Sbjct: 296 DRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNK-RPELMGIIPMLDAYI 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            H++E++ +RS   ++    R  IL+GL+ A   +DE+I +IR     +  
Sbjct: 355 EHQKEIITKRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDA 405


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/318 (48%), Positives = 227/318 (71%), Gaps = 1/318 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVP 352
           ++T F +N+  L  G+  
Sbjct: 300 LQTSFGINLLALVDGQPK 317


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 158/318 (49%), Positives = 226/318 (71%), Gaps = 1/318 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+    EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNVLSMGRVP 352
           ++T F +N+  L  G+  
Sbjct: 300 LQTSFGINLLALVDGQPK 317


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/521 (22%), Positives = 198/521 (38%), Gaps = 87/521 (16%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++T F +NM  L  G+ P++  L  +LK ++ HRR
Sbjct: 1   MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRR 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  IL+GL +A  NIDEII +IR    P                
Sbjct: 60  EVVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGN 119

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                                      ++ LTE Q  AIL+LRL  L  LE  +I  E  
Sbjct: 120 VAAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYK 179

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            LL E   +  +L S ++    I  E+  ++  FS +     RRT   E++ A      +
Sbjct: 180 QLLEEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDME 231

Query: 513 AMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E + V +S+ G+++          +      SA   KE D ++  L A+T D IL
Sbjct: 232 ELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNIL 291

Query: 565 LLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSS 619
           L ST GK Y +    L   S    G+ I  L+ L  N+ I        +     + + + 
Sbjct: 292 LFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATG 351

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ- 677
            G        +       G   L +  E+ +  V    G+  + +  +  K++ F   + 
Sbjct: 352 DGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEE 411

Query: 678 ------------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712
                                   +  M R   GVR     DG     +     EG   +
Sbjct: 412 TAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VL 470

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +  +        RG  G +  K   R+G  + +
Sbjct: 471 TVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 511



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 326 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 385

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 386 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 445

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 446 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 505

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 506 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 563

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 564 IDEIEESELPEGEEALVEND 583


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 183/388 (47%), Positives = 271/388 (69%), Gaps = 8/388 (2%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF
Sbjct: 1   IGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF 60

Query: 106 VQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
             RYPL+ GQGN+G   D  S AA RYTE+R+++ AE++L  + +  VD+   ++    E
Sbjct: 61  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP 224
           P + P++ PN+L NGT+GIAVGMAT IP HNV+EI +A LALID P  S+++LLE++ GP
Sbjct: 121 PKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGP 180

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFPT   I+  R+ I + Y+ GRG  R+RA W  E+        V+T +P+QV  ++++E
Sbjct: 181 DFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKED-----GSAVITALPHQVSGAKVLE 235

Query: 285 KIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +IA  + AK++P++ED+RDES  +   R+V+ P+   +D D +M  +F  +D+E  + +N
Sbjct: 236 QIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRIN 295

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           MN++ +   P V  L  IL EWL  RR+ +  R +FR++ + +R+ IL+GLLIA+LNIDE
Sbjct: 296 MNMIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDE 355

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDA 430
           +I IIR ED PKP+++ RFS++E Q +A
Sbjct: 356 VIHIIRTEDDPKPLLMQRFSISETQAEA 383


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 156/313 (49%), Positives = 224/313 (71%), Gaps = 1/313 (0%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  R +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 181 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 239

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++
Sbjct: 240 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 299

Query: 331 MLSDMETRFPLNM 343
             + ++T F +  
Sbjct: 300 KQTALQTSFGITC 312


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 160/402 (39%), Positives = 259/402 (64%), Gaps = 2/402 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E ++ +SL   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM   G  +   F
Sbjct: 1   MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYT
Sbjct: 61  RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+++Q++E +L+ ++++ V F   Y++   EP+V P++FPNLL NG++GI+ G AT IP
Sbjct: 121 EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  L  ID P+I+I +L++YI GPDFPTG  I++  E I ++Y  G+G   V
Sbjct: 181 PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVVV 239

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           R+R   E +  G   ++VTEIPY+V KS L++KI EL   K++  + ++RDE+      +
Sbjct: 240 RSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRI 299

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                +  + + +   ++  SD++  +  NM  +S    P++M L  I++ +L H+ EV+
Sbjct: 300 AIELKKDANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQIEVV 358

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             R+ + ++  ++R+ I++GL+ A   +DE+IA+IRN    K
Sbjct: 359 TNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKK 400


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D
Sbjct: 61  AMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+IS+ +
Sbjct: 121 NYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTEIPYQ
Sbjct: 181 LMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 156/311 (50%), Positives = 224/311 (72%), Gaps = 1/311 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNV 345
           ++T F +N+  
Sbjct: 300 LQTSFGINLLA 310


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/309 (49%), Positives = 224/309 (72%), Gaps = 1/309 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETRFPLN 342
            ++T F +N
Sbjct: 300 ALQTSFGIN 308


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 155/317 (48%), Positives = 226/317 (71%), Gaps = 1/317 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVLSMGRVP 352
           +T F +N+  L  G+  
Sbjct: 300 QTSFGINLLALVDGQPK 316


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 183/503 (36%), Positives = 274/503 (54%), Gaps = 36/503 (7%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ L    +F+K AR+VGEV+
Sbjct: 280 EELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHLHPSGSFRKCARVVGEVL 339

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL- 142
           GK HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+  E  
Sbjct: 340 GKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSVDGDPPAAMRYTECRLTRFCEDA 399

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM+T IP HN+ EI +A
Sbjct: 400 LLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMSTQIPPHNLHEILDA 459

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            +ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GRG   +R R+ +E   
Sbjct: 460 TIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGRGRVLLRGRFHLEGED 518

Query: 263 ------------------------------RGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
                                         +    +V+TE+PY V KS +++ IA++I  
Sbjct: 519 DDGDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVITELPYGVNKSTVMQVIAQMISV 578

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           K +  +  +RDES      V+    R  D   ++  +   ++++   P+++  L  G  P
Sbjct: 579 KFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVYIPMHLIALEKGTKP 638

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-- 410
               L  +L  W+A R   L R  +        R  +L+GLL A   +D+++  +R    
Sbjct: 639 VRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSLMDDVVKTVRESLS 698

Query: 411 -DKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
            D  K  +       +  Q  A+L L L  L +LE  Q++ E         ++ SLL   
Sbjct: 699 ADDAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERRQLEEEAKAQKDRLSELASLLAHD 758

Query: 469 KQQWNQIACEIREVKEIFSKSTD 491
           ++ +  +  E++  K        
Sbjct: 759 REIYELMVEELQAHKTRHKAPRK 781



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 40/137 (29%)

Query: 644  VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVI 701
            + SEEK           + +V      L F    +      + +GVR    + G     +
Sbjct: 1312 LKSEEK----RDTNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASV 1367

Query: 702  CFKICE--------------------------------GLTWIDSAGRSYNRSENDLLGW 729
                 E                                 L  + +AG       + L   
Sbjct: 1368 AVVPPEVKEDEAKTESRKEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSAL--R 1425

Query: 730  LGKRGGVGSLVPKGFPR 746
            + +R GVG  V +   R
Sbjct: 1426 MQRRRGVGVRVIRLVKR 1442


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 185/721 (25%), Positives = 314/721 (43%), Gaps = 53/721 (7%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     E V   S         L +AL ++ +RAIP   DG KP  RR+++ M E  
Sbjct: 1   MTATIEQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G   V   + + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGA-SVIGTDGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V     G  CI +TE+P  V    + ++I  L+ +  +  + D+ D +
Sbjct: 239 GRGLFTVRGTVSV----DGKNCI-ITELPPGVASGTVQDRIRALVESGEMAGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R    + + + +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L+ R  V+  RS +R++ +  R  ++ GL+  +L+ID  +AIIR     D  +  +  RF
Sbjct: 354 LSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE   +  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F         R T  +      A        +E                       
Sbjct: 474 TAKLFKGPEY---DRRTVLDYDATPVAANNSEDGPRERKV-------------------- 510

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              ++  D          +   LL S  G A     G +    G G   ++  D+  + D
Sbjct: 511 NAAWRLDDRGVF----SDSHGTLLSSGLGWAVWTD-GRIKFTTGGGLPFKIR-DIPVSPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-----EEKMKLV 653
           I       V      L +++ +G    ++ + +      G     V       E+ +   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLAAGHPEDSVIAA 624

Query: 654 VKVT---GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           + +T   G+ +  V E     +  +  IP   R G GV    +  G  + V       G 
Sbjct: 625 LPLTCGNGEAILSVSEKGW-KVTDVADIPVKGRGGAGVGFHPFAKGETTLVSASVSPNGF 683

Query: 710 T 710
            
Sbjct: 684 V 684



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           + G         +    R     + VS +    ++  V   G H+A++    ++L     
Sbjct: 540 TDGRIKFTTGGGLPFKIRD----IPVSPDITGLLQSGVLAPGSHLALITRRGRVLRIDPA 595

Query: 677 QIPEMSRG----KGVRLQS-YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +           GV+L + + +  +   +      G   +  + + +  ++   +   G
Sbjct: 596 AVNPQGAAGNGVAGVKLAAGHPEDSVIAALPLTCGNGEAILSVSEKGWKVTDVADIPVKG 655

Query: 732 KRGGVGS 738
            RGG G 
Sbjct: 656 -RGGAGV 661


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 155/761 (20%), Positives = 317/761 (41%), Gaps = 42/761 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L   L++ ++ +A   I    +P + DG  PV+R+++ A+    +     + K  
Sbjct: 1   MIKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKL- 57

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA--AAYRYTEA 134
                +    +  GD  +  ++  +A   V +Y  +  +G+FG+    +   A+ RY E 
Sbjct: 58  LRASSMSMVYYIFGDIPLTTAMKNMANNGV-KYFYLDPKGSFGDKQSKTGKGASPRYIEC 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ +  IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ + C++ +  I   +I  +K ++ I  PD P GG ++  + +  + Y+ G G F +  
Sbjct: 177 NLIDTCDSIINYIQTKDI--DKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           ++ +++  +      + EIPY+     +  K+ E         + DI D S      +  
Sbjct: 235 KYKMKQCDKY-NIFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDI 293

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              ++ +    +  +   +  E++FP N  +L   G+ P +M L  I   W+ HR   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
               + ++     +  L GL I    +D+ I IIR+    K     ++  F L + Q + 
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEY 413

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  +RL ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K  
Sbjct: 414 IATIRLVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP- 472

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T             + ++E    T+V++ + +I+  +  S    +   K+ D 
Sbjct: 473 -----RRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDK 524

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLID--LNHNQDIVTAF 606
           +      +  D +LL +  G         L   +   +G+ +  L+   L  N+ ++   
Sbjct: 525 ILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDNEKVIYIS 584

Query: 607 VY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D    ++ V   GN   ++  E  +   +       ++   +  +  +T D  V +V
Sbjct: 585 TTKDYKGSVIAVFENGNVARIDLQEYKSKQNRQIPMSAYNTNSNLISIAVITTDVDVLLV 644

Query: 665 GENRKLLIFSIDQIPEM-SR-GKGVRLQSYK---DGGISDVICFKICEGLTWIDSAGRSY 719
            +  K LI +  Q+    SR  +GV         +  I  +I   + +        G+S 
Sbjct: 645 SQEGKALIINTSQLRPTKSRNTQGVVGMKIDPENNKVIGSIIGVTVDDNFNVETEKGKSK 704

Query: 720 NRSENDL---------LGWLGKRGGVGSLVPKGFPRSGKFL 751
               ND+             G R   G+ +     ++ K +
Sbjct: 705 FIMLNDIAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 745


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 181/672 (26%), Positives = 312/672 (46%), Gaps = 51/672 (7%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  +V     + E    GRG F VR    V     G  C V+
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGRGQFTVRGTVTV----DGKNC-VI 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESI 329
           TE+P  V  + + E+I  L+ +  +  + D+ D +   +   ++    R  + + + E +
Sbjct: 259 TELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHNAEQIREQL 318

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
             L+ +E+ F  ++  L   RVP+   +  ++  +L+ R +V+  RS +R++ +  R  +
Sbjct: 319 LALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRHL 378

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           + GL++ +L+ID  +A+IR     D+ +  +  RF++   Q D +L L+LR L KL+  +
Sbjct: 379 VAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRFAIDAVQADYVLALQLRRLTKLDVIE 438

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +++E + L AE  ++  L+++   +   I  E+ E  ++F         R T  +     
Sbjct: 439 LQAEAERLDAEFAELTELVSNPDARRVVIDKELVETAKLFKGPE---FDRRTVLDFEATP 495

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             T       +E       N  W R         S      GD L       T+     +
Sbjct: 496 ITTGAADDGPRERKV----NASW-RLDDRGVFSDS-----HGDLL-------TSGLGWAV 538

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNA 623
            TDG+        L            + D+    DI       V      L +V+ +G  
Sbjct: 539 WTDGRVKFTTGAGLP---------YKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKI 589

Query: 624 FIVEESEIIANTR--KGKTFLKVSSEEKMKLVV----KVTGDHVAVVG-ENRKLLIFSID 676
             ++ + +        G   +K+++ + M  V+       G+  A++    +   +  + 
Sbjct: 590 LRIDPAAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKVTEVP 649

Query: 677 QIPEMSR-GKGV 687
            IP   R G GV
Sbjct: 650 DIPVKGRGGAGV 661



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
           + G       + +    R     +       ++  V   G H+A+V    K+L      +
Sbjct: 540 TDGRVKFTTGAGLPYKIR--DIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAV 597

Query: 679 -PEMSRGKGVRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSYNRSENDLLGWLGKR 733
            P+ + G GV       G   D +   +          +  + + +  +E   +   G R
Sbjct: 598 NPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKVTEVPDIPVKG-R 656

Query: 734 GGVGS 738
           GG G 
Sbjct: 657 GGAGV 661


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 184/740 (24%), Positives = 317/740 (42%), Gaps = 61/740 (8%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           ++ +     E V   S         L +AL ++ +RAIP   DG KP  RR+++ M E  
Sbjct: 1   MTATIEQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESR 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L  G   +KS++I   V G LHPHG  S+Y +   +A  F QR  +I GQG F  I GD 
Sbjct: 61  LLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDI 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE R++     +   +D  AV    T++ E +EP V P+++P LL NG  GIA 
Sbjct: 120 PAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAE 179

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT +P+HN +E+  A  AL+  P ++ ++L++ I GPD+  G   V   + + E    
Sbjct: 180 GWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGA-SVIGTDGLREYITT 238

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG F VR    V     G  CI +TE+P  V    + ++I  L+ +  +  + D+ D +
Sbjct: 239 GRGLFTVRGTVSV----DGKNCI-ITELPPGVASGTVQDRIRALVESGEMAGVADMSDLT 293

Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
              +   ++    R    + + + +  L+ +E+ F  ++  L   RVP+   +  ++  +
Sbjct: 294 DRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAF 353

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421
           L+ R  V+  RS +R++ +  R  ++ GL+  +L+ID  +AIIR     D  +  +  RF
Sbjct: 354 LSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERF 413

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           ++   Q D +L L+LR L KL+  ++++E + L AE   +  L+++   +   I  E+ E
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVE 473

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
             ++F         R T  +      A        +E                       
Sbjct: 474 TAKLFKGPEY---DRRTVLDYDATPVAANNSEDGPRERKV-------------------- 510

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
              ++  D          +   LL S  G A     G +    G G   ++  D+  + D
Sbjct: 511 NAAWRLDDRGVF----SDSHGTLLSSGLGWAVWTD-GRIKFTTGGGLPFKIR-DIPVSPD 564

Query: 602 IVTAF---VYDSTCKLLVVSSKGNAFIVEESEI-----IANTRKGKTFLKVSSEEKMKLV 653
           I       V      L +++ +G    ++ + +       N   G   +    E+++   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAA 624

Query: 654 VKV---TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709
           + V    G+ +  + E     +  +  IP   R G GV    +  G  + +         
Sbjct: 625 LPVSCANGEAILSISEKSW-KVTEVADIPVKGRGGAGVGFHPFGKGEDALLSAA------ 677

Query: 710 TWIDSAGRSYNRSENDLLGW 729
             I + G             
Sbjct: 678 --ISATGYVRGTRTVRAEKR 695



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSID 676
           + G         +    R     + VS +    ++  V   G H+A++    ++L     
Sbjct: 540 TDGRIKFTTGGGLPFKIRD----IPVSPDITGLLQSGVLAPGSHLALITRRGRVLRIDPA 595

Query: 677 QIPEMSRG----KGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
            +           GV+L +   +  +   +      G   +  + +S+  +E   +   G
Sbjct: 596 AVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKVTEVADIPVKG 655

Query: 732 KRGGVGS 738
            RGG G 
Sbjct: 656 -RGGAGV 661


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 153/308 (49%), Positives = 223/308 (72%), Gaps = 1/308 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METRFPLN 342
           ++T F +N
Sbjct: 300 LQTSFGIN 307


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 193/698 (27%), Positives = 353/698 (50%), Gaps = 28/698 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T  +E+++ + +   L E Y+ YA+S IK RA+P++ DGFKP HR++++ M +M L  
Sbjct: 12  DRTGYDEHMRDIVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMYQMKLFD 70

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF-VQRYPLISGQGNFGNIDGDSAA 127
                K A IVG+ +   +PHGD S+Y++LVRL +       PLIS +GNFG       A
Sbjct: 71  KK--TKCANIVGQTMQ-YNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKHYSRDMA 127

Query: 128 --AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
             AYRYTEA  T++A  + +G++++AVD  D ++    EPV+ P+ FPN+LA  T GIAV
Sbjct: 128 YAAYRYTEAGFTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAMPTLGIAV 187

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMA++I S N++E+CEA +  I +P+     +L+ + GPDF TGG I+  R+ + + YR 
Sbjct: 188 GMASNIASFNLKELCEATIEYIKDPKT---DILDIMPGPDFSTGGDILFDRDEMDKIYRT 244

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VR+++ V    + +  I + EIPY      +IE +  L  +KRI  ++DIRD++
Sbjct: 245 GKGSIVVRSKYTV---DKKNRRIEIREIPYSTTTEAIIENVISLCKSKRIMDIDDIRDDT 301

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            ++  ++     RS DPD +M  ++ L+ ++  F  N  +L     P V+ + GIL EW+
Sbjct: 302 DKNGLLITIEYKRSADPDEIMNKLYSLTPLQDTFSCNFTMLINNN-PVVLGVYGILDEWI 360

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFS 422
             R E + R  ++ ++   +++ +++GL    LNID+ I IIR     K   P ++  F 
Sbjct: 361 KFRTECIKRELTYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPNLMKGFD 420

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           + + Q + I  +RLR++ +        E++ +  + +K +++++S K    QI  +++E+
Sbjct: 421 IDKTQAEYITEIRLRNINEEWILDRTKEIEKIKEDIKKNETIISSDKALKKQIIKKLKEI 480

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLS 541
               +   D  + R T        +       ++   + ++IS  G+++ + + +  + +
Sbjct: 481 ----ANKEDYIKPRKTTINTEVKVEKVTVIEEVKNYDVKIIISEHGYVKKVPTSTYKEDT 536

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHN 599
               K+ D +   + A     +L  +  G  Y     ++   +    G  I+   ++  +
Sbjct: 537 EYKLKDDDRILKIIDAQNIGEVLTFTDKGVVYKTKISDIEVCKAGEFGTFIRSAAEIPDD 596

Query: 600 QDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658
           +  V      D +  ++VV   G       +       + K      +  K      V  
Sbjct: 597 EKTVFITATGDFSGNMIVVFENGKVAKFPLNVYETKQNRKKLINAFYTNVKPVAFYHVLE 656

Query: 659 D-HVAVVGENRKLLIFSID--QIPEMSRGKGVRLQSYK 693
           D ++ +  +  KLLIF+ +   +      +G ++    
Sbjct: 657 DVNIKMKSDGGKLLIFNSEMINLKNSKTTQGTQVMKLP 694


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 157/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 156/761 (20%), Positives = 315/761 (41%), Gaps = 42/761 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L   L++ ++ +A   I    +P + DG  PV+R+++ A+    +     + K  
Sbjct: 1   MIKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKL- 57

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA--AAYRYTEA 134
                +    +  GD  +  ++  +A   V +Y  +  +G+FG+    +   A+ RY E 
Sbjct: 58  LRASSMSMVYYIFGDIPLTTAMKNMANNGV-KYFYLDPKGSFGDKQSKTGKGASPRYIEC 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+++ +  IL+ +D++ V  +  +++ + EP+V PS  PN+L N +  IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ + C++ +  I   +I  +K ++ I  PD P GG ++  + +  + Y+ G G F +  
Sbjct: 177 NLIDTCDSIINYIQTKDI--DKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           ++ +++  +      + EIPY+     +  K+ E         + DI D S      +  
Sbjct: 235 KYKMKQCDKY-NIFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDI 293

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              ++ +    +  +      E++FP N  +L   G+ P +M L  I   W+ HR   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDA 430
               + ++     +  L GL I    +D+ I IIR+    K     ++  F L + Q + 
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKYFKLNKEQAEY 413

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           I  +RL ++ +         +D L +   K+++  NS +     I  ++ EVK+ F K  
Sbjct: 414 IATIRLVNINQDWILNKLQNIDELSSNVNKLNTDYNSEQTIKEIIISQLEEVKKKFGKP- 472

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                R T             + ++E    T+V++ + +I+  +  S    +   K+ D 
Sbjct: 473 -----RRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDK 524

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLID--LNHNQDIVTAF 606
           +      +  D +LL +  G         L   +   +G+ +  L+   L  N+ ++   
Sbjct: 525 ILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDNEKVIYIS 584

Query: 607 VY-DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVV 664
              D    ++ V   GN   ++  E  +   +       +++  +  +  +T D  V +V
Sbjct: 585 TTKDYKGSVIAVFENGNVARIDLQEYKSKQNRQIPMSAYNTDSNLISIAVITTDVDVLLV 644

Query: 665 GENRKLLIFSIDQIPEM-SR-GKGVRLQSYKDGG---ISDVICFKICEGLTWIDSAGRSY 719
            +  K LI +  Q+    SR  KGV            I  +I   +          G+S 
Sbjct: 645 SQEGKALIVNTSQLRPTKSRNTKGVVGMKIDPEDNKVIGSIIGVTVDHNFNIETEKGKSK 704

Query: 720 NRSENDL---------LGWLGKRGGVGSLVPKGFPRSGKFL 751
               ND+             G R   G+ +     ++ K +
Sbjct: 705 FIMLNDIAPNGKESMTEYLKGNRNTQGNFIYNTRQKNDKVI 745


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ DNP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 182/672 (27%), Positives = 311/672 (46%), Gaps = 51/672 (7%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L +AL ++ +RAIP   DG KP  RR+++ M +  L  G   +KS+++   V G LHPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
             S+Y +   +A  F QR  +I GQG F  I GD  AA RYTE R++     +   +D  
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
           AV    T++ E +EP V P+++P LL NG  GIA G AT +P+HN +E+  A  AL+  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
            ++ ++L++ I GPD+  G  +V     + E    GRG F VR    V     G  C VV
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVV-GETGLREYITTGRGQFTVRGTVTV----DGKNC-VV 258

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESI 329
           TE+P  V  + + E+I  L+ +  +  + D+ D +   +   ++    R    + + E +
Sbjct: 259 TELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHSAEQIREQL 318

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
             L+ +E+ F  ++  L   RVP+   +  ++  +L+ R +V+  RS +R++ +  R  +
Sbjct: 319 LALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRHL 378

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           + GL++ +L+ID  +A+IR     D+ +  +  RF++   Q D +L L+LR L KL+  +
Sbjct: 379 VAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDRFAIDAVQADYVLALQLRRLTKLDVIE 438

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +++E + L AE  ++  L+++   +   I  E+ E  ++F         R T  +     
Sbjct: 439 LQAEAERLDAEFAELTELVSNPDARRVVIDKELVETAKLFKGPE---FDRRTVLDFEAIP 495

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
             T       +E       N  W R         S      GD L       T+     +
Sbjct: 496 ITTGAADDGPRERKV----NASW-RLDDRGVFSDS-----HGDLL-------TSGLGWAV 538

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNA 623
            TDG+        L            + D+    DI       V      L +V+ +G  
Sbjct: 539 WTDGRVKFTTGAGLP---------YKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKI 589

Query: 624 FIVEESEIIANTR--KGKTFLKVSSEEKMKLVV----KVTGDHVAVVG-ENRKLLIFSID 676
             ++ + +        G   +K+++ + M  V+       G+  A++    +   +  + 
Sbjct: 590 LRIDPAAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKVTEVP 649

Query: 677 QIPEMSR-GKGV 687
            IP   R G GV
Sbjct: 650 DIPVKGRGGAGV 661



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
           + G       + +    R     +       ++  V   G H+A+V    K+L      +
Sbjct: 540 TDGRVKFTTGAGLPYKIR--DIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAV 597

Query: 679 -PEMSRGKGVRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSYNRSENDLLGWLGKR 733
            P+ + G GV       G   D +   +          +  + + +  +E   +   G R
Sbjct: 598 NPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKVTEVPDIPVKG-R 656

Query: 734 GGVGS 738
           GG G 
Sbjct: 657 GGAGV 661


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 155/311 (49%), Positives = 223/311 (71%), Gaps = 1/311 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EP V PS+F NLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299

Query: 335 METRFPLNMNV 345
           ++T F +N+  
Sbjct: 300 LQTSFGINLLA 310


>gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 305

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 227/305 (74%)

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E D+L AEK  ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      
Sbjct: 1   EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           D   + QAMIE+EP+T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L 
Sbjct: 61  DLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLF 120

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
            +T GK +T+ A  L  GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FI
Sbjct: 121 FTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFI 180

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           V ESE +ANTRKGK  + V + ++ KL  +V+GDH+AVVGENRK+L+F +  IPEM+RGK
Sbjct: 181 VPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGK 240

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVRLQ YKDGG+ DV  F I +GL+W DSA R++NRS+ +L+ W+G R   G LVPKGFP
Sbjct: 241 GVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFP 300

Query: 746 RSGKF 750
           RSGKF
Sbjct: 301 RSGKF 305


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/306 (49%), Positives = 224/306 (73%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E 
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++TEIPYQV K+
Sbjct: 181 IPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  + ++L+ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 152/319 (47%), Positives = 219/319 (68%), Gaps = 1/319 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEI+I  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE   G   IV+TEIPYQV K+RL+E+IAEL   K+I  +  + DES      ++
Sbjct: 245 GRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIV 304

Query: 314 FPKNRSLDPDLLMESIFML 332
               R +   +++ +    
Sbjct: 305 IEVRRDISASVIVNNFIQK 323


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG +PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ 
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQD 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      V+    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P+I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLN 342
           +T F +N
Sbjct: 300 QTSFGIN 306


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 229/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 156/312 (50%), Positives = 224/312 (71%), Gaps = 1/312 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVLSM 348
           T F +NM  L  
Sbjct: 300 TSFGINMLALVD 311


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 156/314 (49%), Positives = 224/314 (71%), Gaps = 1/314 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 EYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSMGRVP 352
           F +N+  L  G+  
Sbjct: 300 FGINLLALVDGQPK 313


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETRFPLN 342
           +T F +N
Sbjct: 300 QTSFGIN 306


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVVTEIPYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F + +  L
Sbjct: 300 TSFGIKLLAL 309


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 155/310 (50%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLI KIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 229/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 230/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 107/459 (23%), Positives = 185/459 (40%), Gaps = 63/459 (13%)

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES +D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+
Sbjct: 3   RDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDII 61

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----- 416
             ++ HRREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P        
Sbjct: 62  SAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALI 121

Query: 417 --------------------------------MVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                              ++ LTE Q  AIL+LRL+ L  LE 
Sbjct: 122 SRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEH 181

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            ++  E   LL +  ++  +L S  +    I  E+  +++ F        RRT   E++ 
Sbjct: 182 EKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITA 233

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALH 556
                  + +I +E + V +S++G+++          +      SA   KE D +   L 
Sbjct: 234 NSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLV 293

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A+T D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+  
Sbjct: 294 ANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEG 353

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKL 670
             + + ++ G       +E       G   + ++  +++  V   +G D V +     K+
Sbjct: 354 VNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKV 413

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708
           + F  D +  M R   GVR       G   V+   I  G
Sbjct: 414 VRFKEDAVRAMGRTATGVRGIKL--AGDDKVVSLIIPRG 450


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 230/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 156/305 (51%), Positives = 222/305 (72%), Gaps = 1/305 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+
Sbjct: 181 NQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  +
Sbjct: 240 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 299

Query: 334 DMETR 338
            ++T 
Sbjct: 300 ALQTS 304


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 230/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TSFGINMLAL 309


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 221/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT    +  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPT-ARQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 153/310 (49%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQ
Sbjct: 181 LMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++
Sbjct: 240 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 152/305 (49%), Positives = 221/305 (72%), Gaps = 1/305 (0%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           ++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
           I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+
Sbjct: 181 IPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 239

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 299

Query: 334 DMETR 338
            ++T 
Sbjct: 300 ALQTS 304


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 109/554 (19%), Positives = 207/554 (37%), Gaps = 103/554 (18%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            K++  + ++RDES +D   V+    R   P++++ +++  + +++ F +N+  L  G  
Sbjct: 1   EKKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDG-R 59

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           P+++ L  +L+ ++ HRREV+ RR+ F ++    R  IL+G  +A  NID +IA+I+   
Sbjct: 60  PRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASP 119

Query: 412 KPKPV-------------------------------------MVSRFSLTENQVDAILNL 434
            P                                           ++ L+  Q  AIL L
Sbjct: 120 TPAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILEL 179

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL  L  LE  ++  E   +L +  ++  +LNS  +    I  E+  ++  +  +     
Sbjct: 180 RLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDA----- 234

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
           RRT   E+  A        +I +E   V IS+ G+ ++         +      SA   K
Sbjct: 235 RRT---EILDARLDLTLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIK 291

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D +   L A++   +L+ S+ GK Y L    +   S    G  +  L+ L+  + I T
Sbjct: 292 DEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITT 351

Query: 605 AFVYD------------------------------------------STCKLLVVSSKGN 622
               D                                              + + ++ G 
Sbjct: 352 MLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGT 411

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                          G   L++   + +       G+  + +  +  K+  F    +  M
Sbjct: 412 VKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM 471

Query: 682 SR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R  +GVR     +G    +I   I  EG   + ++ R Y +          KRGG G +
Sbjct: 472 GRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVI 529

Query: 740 VPKGFPRSGKFLSS 753
                 R+G+ + +
Sbjct: 530 AMVSNERNGRLVGA 543



 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E     KA ++ A  +K P   + +  G ++        +  S  L AL   EGD L  A
Sbjct: 383 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISA 442

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                   I+L S  GK       ++ +       ++ +  L   Q +++  + +   ++
Sbjct: 443 AITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQI 501

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKL 670
           L  S +G       SE     R G+  + + S E+    +  V  + G+ + ++ +   L
Sbjct: 502 LTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTL 561

Query: 671 LIFSIDQIPEMSRG-KGVRLQSYKDG 695
           +   + ++  + R  +GV L      
Sbjct: 562 VRTRVGEVSSLGRNPQGVTLIKLASD 587


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 156/309 (50%), Positives = 223/309 (72%), Gaps = 1/309 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 EYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLS 347
           F +N+  L 
Sbjct: 300 FGINLLALV 308


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T 
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSM 348
           F +N+  L  
Sbjct: 300 FGINLLALVD 309


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 225/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 159/360 (44%), Positives = 230/360 (63%), Gaps = 2/360 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I++ +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KRI  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN          
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREG 358


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+    A+KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 160/366 (43%), Positives = 236/366 (64%), Gaps = 5/366 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M + G      + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +IDGD+ AA RYTE RM ++ + +L  +D++ VDF   Y+ ++  P V P+K P LL NG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGMAT+IP HN+ E+    LA I+N +I+IE+L+++I GPDFPT  I +  R+ I
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAI-INGRKGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++YR GRG   VRA+  VE   +G   IVVTE+PYQV K  LIEKIAEL+  KR+  + 
Sbjct: 180 EDAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGIS 239

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D S +    ++     +   ++++ +++ L+ M+  F +NM  L     P++  L  
Sbjct: 240 SIEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVAL-DHGQPKIFNLKQ 298

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPV 416
           I++ ++ HRREV+ RR+ F ++    R  IL+GL IA  NID +I +IRN    D+ +  
Sbjct: 299 IIEAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNFKTADEAREG 358

Query: 417 MVSRFS 422
           ++ R  
Sbjct: 359 LLDRPW 364


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 157/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           SLVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SLVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +N+  L
Sbjct: 300 TSFGINLLAL 309


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/305 (50%), Positives = 220/305 (72%), Gaps = 1/305 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPL 341
           T F +
Sbjct: 300 TSFGI 304


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 269/474 (56%), Gaps = 8/474 (1%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+   ++       +  YA   I++RA+PDLRDG KPV RRI++ M +MGL     +KKS
Sbjct: 7   NLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKS 66

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR VGE++GK HPHGD S+YD+++R++Q +   +  +S  GN G++DGD+AAA RYTE R
Sbjct: 67  ARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETR 126

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++     +L+ +D+  V F + +++ + EP V P+  PNL  NG SGIA G AT+I  HN
Sbjct: 127 LSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHN 186

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+ ++    ID P   ++++L+ + GPDFPTGG  V   +S+ + Y+ G+G F ++A+
Sbjct: 187 TNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGG-NVYFEKSLSDIYQAGKGKFIIQAK 245

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           +   EV +    I +T+I Y+  K+ ++++I E+I   ++  +E + D S  +   ++  
Sbjct: 246 Y---EVNKNLNQIEITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIK 302

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
               L  + +M  +F  + ++  F LN  V++     Q+  L   L  +L    E++  +
Sbjct: 303 HKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQI-GLLSYLDHFLKFCHELIINK 361

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432
           + + ++   +R+EI+ GL+ A   ID+II +IR   ++   +  ++  F  T NQ +AI+
Sbjct: 362 AKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAEAIV 421

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +LRL  L   + +++  E + L       + L+ S K +   +  +    K+ F
Sbjct: 422 SLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQF 475


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TSFGINMLAL 309


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 151/308 (49%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T 
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 299

Query: 339 FPLNMNVL 346
           F +N+  L
Sbjct: 300 FGINLLAL 307


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 156/310 (50%), Positives = 224/310 (72%), Gaps = 1/310 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TRFPLNMNVL 346
           T F +NM  L
Sbjct: 300 TYFGINMLAL 309


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 151/304 (49%), Positives = 220/304 (72%), Gaps = 1/304 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
            +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+P
Sbjct: 181 PELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 239

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + 
Sbjct: 240 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 299

Query: 335 METR 338
           ++T 
Sbjct: 300 LQTS 303


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 157/654 (24%), Positives = 307/654 (46%), Gaps = 31/654 (4%)

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
              PL+   GN G+ID D  AA RYTE R+ +++E +L+ + ++ V F   +++ + EP 
Sbjct: 1   MNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPT 60

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           + P+ FPNLL NG  GIA G AT IP HN+ E+ +A + +I NP I+IE++   I+GPDF
Sbjct: 61  ILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDF 120

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGGI V  +  I ++++ G+G  ++ + + + E   G   I +T IP+ + KS LIE+I
Sbjct: 121 PTGGI-VYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEI 178

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            ++    +I  ++++ D+S ++   +L    +  +PDL++  +   + ++  +  N   +
Sbjct: 179 DDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAI 238

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
                P+++ +  ++  +L H R++     +F +    +R+EI+ G L      DE+I +
Sbjct: 239 CDNS-PKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKV 297

Query: 407 IRNEDKPKPVMVS----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           IR  D  K  +VS     F+ ++ Q +AI ++RL  L K+E+     E  NL     +  
Sbjct: 298 IRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFK 357

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            L+ +  +    +   + + K+   K       R T    S       +  +++ E    
Sbjct: 358 KLIENKDEFDKNLINMLTDFKKHHGKP------RKTKIIDSDIKIKINKDELVKDEFFYF 411

Query: 523 VISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            I+  G  + L   +    ++       GD        +   + + L+  G+   L    
Sbjct: 412 WITKSGLYKKLDIKNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQ 471

Query: 580 LLS--GRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +     +     +++ + + +NQ I++ F    ++S+  L+ +S    A  +   +++  
Sbjct: 472 IPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKI 531

Query: 635 TRKGKTFL-KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL-Q 690
            +K    + +    +++  V       ++ ++    + L  SI +IP  +R   G+++ +
Sbjct: 532 KQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFR 591

Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
             K+  IS     +  E L  ID   +    +  +L        G   L PK F
Sbjct: 592 HRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFF------GNKILTPKNF 639


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 177/733 (24%), Positives = 322/733 (43%), Gaps = 44/733 (6%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L+  + +    Y+   +  RAIPD RDG KP +RRI+ AM EM           A
Sbjct: 3   IVEKELQHIVTDNMGQYSTYVLLSRAIPDFRDGLKPSYRRILWAMQEMKATRFTKSFNVA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY-RYTEAR 135
             V       HPHG  S Y ++V +AQ   Q  P++ G+GNFG    + A    RYTE +
Sbjct: 63  GAV----MLYHPHG--STYPTMVGMAQKDSQLNPMVIGKGNFGQHASELAFGAERYTEVK 116

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           ++ +   ++  V +  VDF D Y+     P VFP K+P +LA   SGI VG ++SIPS N
Sbjct: 117 LSAIGLDMMADVKKGGVDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSSSIPSFN 176

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             E+CEA +  I++ E +       ++ PDF TG  I+   + I      G G    RA+
Sbjct: 177 TTELCEAIIKRIEDNEQT-------LLIPDFGTGAYIINDPDVIKSINENGSGSINQRAK 229

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
               E  + S  I+V EIPY   K ++IE+I +L    ++  +  + D S      ++  
Sbjct: 230 V---EFDKDSREIIVKEIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKGLEIVIT 286

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
             R +D + L+E ++ ++ M+  +  N+ V++   +P+ M +  ++ +WL  R +   R 
Sbjct: 287 AKRGVDLEQLLEKLYQMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRTDTYQRM 346

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--DKPKPVMVSRFSLTENQVDAILN 433
            +  +Q    ++EIL GL     +++ +I IIRN   D     + S F+L++ Q + +  
Sbjct: 347 ITKDIQTKQVQLEILYGLENIKDDLEHVIKIIRNSTDDNVIQNLSSEFNLSKLQAERVSG 406

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L++L      +  S + +L  E E+++  +   ++    I  ++++V   F       
Sbjct: 407 LKLKNLTTTFIKKQLSSIKSLEKEIEQLEWTVEKPQRIHKLIVQDMKDVIAQFGTPRKSQ 466

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSALHFKEGDSLK 552
               +                +E+  + V+++  G+++ +   S+   + + FKEGD+  
Sbjct: 467 LIDKSIV---AKKAKLSPVNTVEEYNVKVIVTKDGYVKKIPLTSLRGNAEIQFKEGDTPT 523

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD- 609
             +     + +L+ +     Y     +L     +  G  I  LIDL   ++I        
Sbjct: 524 SEIDTDNGEELLIFTNKQNVYKKQLNDLSDTKPKDLGNYIPSLIDLEKGEEIKGIITLSK 583

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669
            T  +L+    G    V       +T++ K    V  +  + L        +  + E+ K
Sbjct: 584 DTKYVLLGFEDGKVAKVNVEAYRTSTKRSKLKNGVVGKMIVLLTTLTDDVDIMSISESNK 643

Query: 670 LLIFSIDQIPEM-SRGK-GVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDL 726
            ++ +   I    S+   G+  Q  K+G  I  ++  +  E               E++ 
Sbjct: 644 AIVTNTSMISAKNSKATQGITNQKLKEGESIKKLLVLQEDE---------------EDNR 688

Query: 727 LGWLGKRGGVGSL 739
             +  +  G G  
Sbjct: 689 EYYRVQSAGAGKK 701


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 152/308 (49%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVLSM 348
           +N+  L  
Sbjct: 300 INLLALVD 307


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 154/310 (49%), Positives = 221/310 (71%), Gaps = 1/310 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
             I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 GIIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVLSM 348
           F +N+  L  
Sbjct: 300 FGINLLALVD 309


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 152/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E 
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F 
Sbjct: 240 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 299

Query: 341 LNMNVLS 347
           +N+  L 
Sbjct: 300 INLLALV 306


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 150/310 (48%), Positives = 222/310 (71%), Gaps = 1/310 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 188 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 246

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 247 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 306

Query: 343 MNVLSMGRVP 352
           +  L  G+  
Sbjct: 307 LLALVDGQPK 316


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 154/303 (50%), Positives = 219/303 (72%), Gaps = 1/303 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 ETR 338
           +T 
Sbjct: 300 QTS 302


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 180/516 (34%), Positives = 275/516 (53%), Gaps = 51/516 (9%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             LE+ +L YA STI  RA+PD+RDG KPVHRR+I+AM ++ +     F+K AR+VGEV+
Sbjct: 147 EELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGPFRKCARVVGEVL 206

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL- 142
           GK HPHGDQ+VYD+L RLAQ FV R+PLI G GNFG++DGD  AA RYTE R+T+  E  
Sbjct: 207 GKFHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRYTECRLTRFCEDA 266

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ + +  V FR  ++  + EPVVFP+  P LL  G+SGIAVGM+T IP HN+ E+ +A
Sbjct: 267 LLKNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQIPPHNLHEVIDA 326

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--- 259
           A+ALI +P +  E+LL+ + GPDFPTGG++V + E I  +Y+ G G   +R R  +E   
Sbjct: 327 AVALIRDPNLPDEELLKIVPGPDFPTGGLLVNA-EEIPSAYKEGHGRVLLRGRVHLEGEE 385

Query: 260 ------------------------------------------EVGRGSWCIVVTEIPYQV 277
                                                     +  R    +V+TE+PY V
Sbjct: 386 GEEEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKERRLVITELPYGV 445

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +   ++++ 
Sbjct: 446 NKSTVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLRREADAHTILTLLLKHTNLQV 505

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
             P+N+  L  G  P    L  +L  W++ R + L R  +        R  +L+GLL A 
Sbjct: 506 YIPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKARSHLLEGLLRAV 565

Query: 398 LNIDEIIAIIRNE---DKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             +D+++  +R     D+ K  +       +  Q  A+L L L  L +LE  Q++ E   
Sbjct: 566 NLMDQVVKTVRESLSADEAKRKLAEPPLGFSPAQAQALLRLTLSRLTRLERRQLEDEAAE 625

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
                 ++ SLL    + ++ +  E++ +K      
Sbjct: 626 QTRRLARLASLLAHDNEIYDLMTDELKALKSRHRAP 661



 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 661  VAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVICFKICE 707
            + +V  +   L F    +      + +GVR    + G     +     +
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQ 1266


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 220/303 (72%), Gaps = 1/303 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PY
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + +
Sbjct: 240 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 299

Query: 336 ETR 338
           +T 
Sbjct: 300 QTS 302


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 152/310 (49%), Positives = 223/310 (71%), Gaps = 1/310 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVLSMGRV 351
           N+  L  G+ 
Sbjct: 300 NLLALVDGQP 309


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 151/376 (40%), Positives = 222/376 (59%), Gaps = 4/376 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M     + +    +  +  + L   +   +L YA S I  RA+PD RDG KPV RRI+  
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M  MGL       KS+R+VG+V+G+LHPHGD ++Y++LVRLAQPF  R PLI G GNFG+
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +D D  AA RYTEAR+   A  +   +DED VDF   Y+   +EP V P+ FPNLL NG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT++P HN+ E+  AA  L+ +PE ++E+L+ ++ GPD P GG+IV   + I 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIV-GLDGIR 238

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           E+YR GRG F  RA   VE V      IVVTE+PY V   ++I +I E + +K++  + D
Sbjct: 239 EAYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITD 298

Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           + D +       ++       +P+ ++  ++  + +E  F +N   L  G+    + L  
Sbjct: 299 VADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPH-TLGLRE 357

Query: 360 ILKEWLAHRREVLFRR 375
           +L+ ++ HR  V+ RR
Sbjct: 358 LLEVFVRHRLTVVTRR 373


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 155/307 (50%), Positives = 221/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++D DSAAA RYTEARM+++A  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ DNPEI+ ++L+E
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           Y  GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K
Sbjct: 181 YSPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F
Sbjct: 240 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 151/303 (49%), Positives = 219/303 (72%), Gaps = 1/303 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 299

Query: 336 ETR 338
           +T 
Sbjct: 300 QTS 302


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 153/303 (50%), Positives = 218/303 (71%), Gaps = 1/303 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D+ D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I +
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+R+ES  +   ++    R  +  +++  ++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQ 299

Query: 337 TRF 339
           T F
Sbjct: 300 TSF 302


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 148/306 (48%), Positives = 216/306 (70%), Gaps = 1/306 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     FKKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ G GNFG++DGD AAA RYTEAR+++++  IL+ + +D +D++D
Sbjct: 61  AMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NPE++ ++
Sbjct: 121 NYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L++ I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   IV+ EIPYQ
Sbjct: 181 LMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R     +L+  ++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQ 299

Query: 337 TRFPLN 342
           T F +N
Sbjct: 300 TSFGIN 305


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/505 (21%), Positives = 196/505 (38%), Gaps = 85/505 (16%)

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++  ++ L+ M+  F +NM  L     P++  L  I++ ++ HRREV+ RRS F ++   
Sbjct: 2   VLNHLYSLTQMQVTFGINMVAL-DHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKAR 60

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------------- 416
            R  IL+GL +A  NIDE+IAIIRN    +                              
Sbjct: 61  ERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDEL 120

Query: 417 ------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                    ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S ++
Sbjct: 121 EENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAER 180

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               I  E+ EVK  F              E++ A      + +I +E + V +S+ G++
Sbjct: 181 LMEVIREELEEVKAQFGDD--------RLTEITAASGDIDLEDLIAQEDVVVTLSHEGYV 232

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL- 581
           +          +      SA   KE D ++  L A+T D IL  S+ G+ Y L    L  
Sbjct: 233 KYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQ 292

Query: 582 -SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
            S    G  I  ++ L  N+ I        Y+    +++ ++ G    +  +E       
Sbjct: 293 ASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSN 352

Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-- 693
           G   L +  E+++  V    G + + +     +++ F+ + +  M R   GVR       
Sbjct: 353 GIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALT 412

Query: 694 ------------------------DGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLG 728
                                   D  I  V+   + +G    + +    Y +       
Sbjct: 413 NDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEY 472

Query: 729 WLGKRGGVGSLVPKGFPRSGKFLSS 753
               R   G +  K   R+GK +++
Sbjct: 473 PTKSRNTKGVISIKVSERNGKVVAA 497



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 184/532 (34%), Gaps = 81/532 (15%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   + + + I+ES+ L R     R    + E+ +      + E    V +S + E IA 
Sbjct: 26  GQPRLFNLKEIIESFVLHRREVVTRRS--IFELRKARERTHILE-GLAVARSNIDEMIAI 82

Query: 289 LIIAKRIPLLEDIRDESAEDVR-IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           +  +K            +  +   ++   + S  PD L E++ +  +     P  +N + 
Sbjct: 83  IRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 142

Query: 348 MGRVPQVMP--LDGILKEWLA---------HRREVLFR-----RSSFRMQAIDRRVEILK 391
             R+ ++     + ++KE+           H      R     R            + L 
Sbjct: 143 ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 202

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            +  A  +ID +  +I  ED    V +S     + Q       + R  +     ++K E 
Sbjct: 203 EITAASGDID-LEDLIAQEDV--VVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEE- 258

Query: 452 DNLLAEKEKID------SLL--NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
                  EK+       ++L  +S  + +      ++  +   +     GR       + 
Sbjct: 259 ----DFIEKLLVANTHDTILCFSSRGRLY-----WLKVYQLPQASRGARGRPIVNILPLQ 309

Query: 504 RADK--ATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIAL 555
             ++  A L  +  E++   V+ +  G ++ +      +  S  + AL+ ++ D L    
Sbjct: 310 ENERITAILPVSAYEEDKFVVMATAGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVD 369

Query: 556 HAHTTDRILLLSTDGKAYTLPA------GNLLSG-RGHGEAIQLLIDLNHN--------- 599
               ++ I+L S+ G+            G L +G RG   A+   I  + +         
Sbjct: 370 ITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 429

Query: 600 -----------QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                        +V+  V      +L  +  G     + SE    +R  K  + +   E
Sbjct: 430 DNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 489

Query: 649 KMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   VV  T     D + ++ +   L+   + ++  + R  +GVRL    D 
Sbjct: 490 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADD 541


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 152/307 (49%), Positives = 222/307 (72%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 162/369 (43%), Positives = 244/369 (66%), Gaps = 8/369 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   PQV  L  IL EW+
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 366 AHRREVLFR 374
           + RR+    
Sbjct: 357 SFRRKRYAH 365


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 155/308 (50%), Positives = 222/308 (72%), Gaps = 1/308 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV 
Sbjct: 181 ELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T 
Sbjct: 240 KARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTS 299

Query: 339 FPLNMNVL 346
           F +NM  L
Sbjct: 300 FGINMLAL 307


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 151/325 (46%), Positives = 221/325 (68%), Gaps = 6/325 (1%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  + + V  V L+  +E+ Y+ YA+S I  RA+PD+RDG KPV RRI+ +M E+     
Sbjct: 2   DEHIFDKVHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSMIELNNGPD 61

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              +K ARIVG+ +GK HPHGD S+Y++LV+LAQ F  RYPL+ G GNFG++DGD AAA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEAR+++++  +L  ++++ VDF   ++E + EP V PS++PNLL NGTSGIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 190 SIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           +IP HN++E+  A + +IDN      + +IE++L  + GPDFPTG +I+  +  I E+YR
Sbjct: 182 NIPPHNLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMIL-GKMGIEEAYR 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  RVRA   +E +  G   IVVTE+PY V K++LIEKIAEL+  K+I  + D+RDE
Sbjct: 241 TGRGKIRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDGITDLRDE 300

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESI 329
           S      +     R ++P++++  +
Sbjct: 301 SDRSGMRISIELRRDVNPNIVLNQL 325


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 151/305 (49%), Positives = 221/305 (72%), Gaps = 1/305 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 299

Query: 342 NMNVL 346
           N+  L
Sbjct: 300 NLLAL 304


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 153/304 (50%), Positives = 220/304 (72%), Gaps = 1/304 (0%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221
           + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281
            GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+R
Sbjct: 181 PGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 239

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           LIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +
Sbjct: 240 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGI 299

Query: 342 NMNV 345
           N+  
Sbjct: 300 NLLA 303


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 151/315 (47%), Positives = 215/315 (68%), Gaps = 4/315 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   VRAR  VE   +G   I+V+E+PYQV K++L+EKIAELI  K+I  + +I D S
Sbjct: 237 GRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLS 296

Query: 306 AEDVRIVLFPKNRSL 320
            ++   +     R  
Sbjct: 297 NKEGIRIEIDIKRDA 311


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 162/319 (50%), Positives = 223/319 (69%), Gaps = 1/319 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LALIDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAI-IDGRVGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSD 334
             +  +P+L++  ++  +D
Sbjct: 302 VKKGEEPELVLNKLYKYTD 320


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 161/319 (50%), Positives = 223/319 (69%), Gaps = 1/319 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           NV    +   L+E YL Y++S I  RA+PD+RDG KPVHRRI+ AM+EMG+     FKKS
Sbjct: 3   NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVGEV+GK HPHGD +VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR
Sbjct: 63  ARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M ++   +L+ +D+D +D+R  +++   EP V P+K PNLL NG  GIAVGMAT+IP HN
Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  LA+IDN +I I +L+ YI GPDFPTG I ++ R  I+E+Y+ GRG  +VR +
Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAI-IDGRAGIIEAYKTGRGKIKVRGK 241

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +EE   G   I+V+EIPYQ+ K+ LIEKIA L+  K+I  + D+RDES  +   +L  
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 316 KNRSLDPDLLMESIFMLSD 334
             +  +P+L++  ++  +D
Sbjct: 302 VKKGEEPELVLNKLYKYTD 320


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 155/306 (50%), Positives = 221/306 (72%), Gaps = 1/306 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             Q F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F 
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 299

Query: 341 LNMNVL 346
           +N+  L
Sbjct: 300 INLLAL 305


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 153/302 (50%), Positives = 218/302 (72%), Gaps = 1/302 (0%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
            Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
           L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQ
Sbjct: 181 LMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 239

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           V K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++
Sbjct: 240 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299

Query: 337 TR 338
             
Sbjct: 300 RS 301


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/304 (49%), Positives = 220/304 (72%), Gaps = 1/304 (0%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+A
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  +
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
           GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++L
Sbjct: 181 GPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 239

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           IEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N
Sbjct: 240 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 299

Query: 343 MNVL 346
           +  L
Sbjct: 300 LLAL 303


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/311 (48%), Positives = 221/311 (71%), Gaps = 1/311 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+P++RDG KP HRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DS+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I+
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PY
Sbjct: 181 ELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + +
Sbjct: 240 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTAL 299

Query: 336 ETRFPLNMNVL 346
           +T F +N+  L
Sbjct: 300 QTSFGINLLAL 310


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 173/626 (27%), Positives = 306/626 (48%), Gaps = 37/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
               ++   +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA
Sbjct: 3   TTNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSA 59

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEA 134
            + G+V+ KLHPHG  S Y S+V + Q      P++ G+GNFG         AA RY+E 
Sbjct: 60  NVAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEV 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++  ++Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA +  I+  E +       ++ PDF TGG+IV+      +    GRG  ++R 
Sbjct: 177 NLKELTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +         I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++  
Sbjct: 230 KAEI-----VKNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+ D ++L+E ++  + +++ F  NMN+L    +P+V+ +   + +WL  R   + R
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDD-LPKVLGVWQTIDKWLEWRTTCIKR 343

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--DKPKPVMVSRFSLTENQVDAIL 432
             S  ++ + R++ +L+GL    L+IDE I IIR    D+ +P +   F +   Q   + 
Sbjct: 344 GLSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVA 403

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N++LR++ +    +   ++D      E    ++ S  +    I   + E KE + K    
Sbjct: 404 NMKLRNINREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKE--- 460

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E++      L + +     +T+ ++  G+    K +       + K GD + 
Sbjct: 461 --RRTKIVELTEVKPVRLVEEV-PNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVL 513

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS 610
                     IL+  +D   + +   ++   R +  G  +  +I  + N  IV+  + DS
Sbjct: 514 KVFETENKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIR-DKNITIVSYSILDS 572

Query: 611 TCKLLVVS-SKGNAFIVEESEIIANT 635
           T K ++ + S      +       N 
Sbjct: 573 THKFIIAAYSNNRIAKINLEAFQGNR 598


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 148/309 (47%), Positives = 218/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+P++RD  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA M++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMA +IP H + EI +  LA+ +NP+I+I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 165/653 (25%), Positives = 304/653 (46%), Gaps = 57/653 (8%)

Query: 131  YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             TEARM++ A L++  + E+ VD    Y+   ++P V P+ FPNLL NGTSGIAVGMAT+
Sbjct: 563  NTEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATN 622

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
            +  HN+ E+  AA  LI +P  +++KL+E++ GPD PTG  ++   + +  +Y  GRG  
Sbjct: 623  MIPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTG-GLLLGLDEVRRAYETGRGVV 681

Query: 251  RVRARWCV--EEVGRGSWCIVVTEIPYQVQKSRLIEKIA-ELIIAKRIPLLEDIRDESAE 307
            R+R +  +   E  RG   I V E+PY V   ++I  I  E+   KR+  + D++D +  
Sbjct: 682  RMRGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDR 741

Query: 308  -DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +   ++      ++P  L+  ++ L+ +E  F +N  VL  G+ P+ + L  +L+ +LA
Sbjct: 742  ENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQ-PRTLGLKALLEVFLA 800

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
            HR EV+ RRS++R +    R+ ++ GLLIA L+ID+++ +IR  +     K  ++ +F L
Sbjct: 801  HRYEVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQKFKL 860

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            +E Q   IL+  LR L K +  ++++E + L AE  ++ ++L+        ++ E+  V 
Sbjct: 861  SEIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIAELSTILDDENVLKKLVSDELAAVV 920

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE----KEPITVVISNRGWIRSLKSHSVD 539
            + F+       RRTT  +    +               +P  V++S  G +    + S +
Sbjct: 921  KQFAAP-----RRTTLVDGDLKEVLAASAPAGPLEVADDPCQVILSATGLVARTAAESEE 975

Query: 540  LSALHFKEG----DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---------SGRGH 586
             +    + G    D+++  +H+    R+LL+++ G+A+ +    L          S RG 
Sbjct: 976  AAEGRRRHGRVKHDAVRAVVHSTARGRVLLVTSAGRAFKVDVLPLPVLPEQAGTVSLRG- 1034

Query: 587  GEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFI------VEESEIIANTR 636
            G +   L+ L   + +V       T +    L + + +G   +      V   E      
Sbjct: 1035 GMSAAELVPLEPGESVVGLAPLGPTAEGSPGLALGTRQGVVKVCAPDWPVRSDEFE---- 1090

Query: 637  KGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK 693
                 + +   +++     +T   + +A +     LL F    +     +G G+   +  
Sbjct: 1091 ----VIGLRDGDEVVGATWLTDGAESLAFLTSAASLLRFPAGTVRPQGLKGGGMAGVALP 1146

Query: 694  DGGIS----DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            DG        V       G   + ++  +  +           R   G    +
Sbjct: 1147 DGAQVVYFGAVRTDDPQHGEPMVVTSTGATVKVTPFAAYPAKGRATGGVRAQR 1199



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/124 (50%), Positives = 79/124 (63%), Gaps = 1/124 (0%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    L   + + YL YA S I  RA+PD RDG KPVHRRI++AM E G     A  KS
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKS 79

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+V+G+ HPHGD ++YD++VR+AQ F    PLI G GNFG+ D D  AA RY    
Sbjct: 80  ARVVGDVMGRYHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPD-DGPAAARYCVTG 138

Query: 136 MTQV 139
            T++
Sbjct: 139 DTRI 142


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 150/307 (48%), Positives = 220/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R    ++Y+ GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA  +  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 179/437 (40%), Gaps = 30/437 (6%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+  F + M  L   + P+V+ L  +L  +L H++EV+ RR+ + +   + R  IL+GL+
Sbjct: 1   MQDTFGVIMLALVDNQ-PKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLM 59

Query: 395 IAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NID +I+IIR  +     K  ++  F L++ Q  AI+++RLR+L  LE  ++++E 
Sbjct: 60  IALDNIDRVISIIRGSENVQTAKESLMKEFELSDVQAQAIVDMRLRALTGLERAKLEAEY 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+ + E+  ++L   K+    I  EI  + + +        RRT+       +     
Sbjct: 120 AELIKKIEEYKAILADEKKLLGVIRTEILVIADKYGD-----DRRTSIG---FDEFDISM 171

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ +  +N G+I+                +  +   + D ++      +   +
Sbjct: 172 EDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTIDQDYIEDLFMTTSHHYL 231

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           +  +  G+AY + A  +        G A+  L+ L   + I        Y+    L + +
Sbjct: 232 MFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITAVIPIREYNDNNYLFMAT 291

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677
             G     + +E     + G   + +   +++  V        + +V +    + F    
Sbjct: 292 RNGIVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTDDTKDIMLVTKLGMCIRFKETD 351

Query: 678 IPEMSRGK-GVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGG 735
           +    R   GV      D     V+  +I  +G + +  + +   +           RGG
Sbjct: 352 VRPTGRTSMGVIGMDLMDE--DQVVGMQIDSQGDSLLIVSEKGLGKRTLIEEFTTQHRGG 409

Query: 736 VGSLVPKGFPRSGKFLS 752
            G    K   ++G  + 
Sbjct: 410 KGVKCYKINEKTGNVVG 426



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 18/237 (7%)

Query: 483 KEIFSKSTDLGRRRTT------FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            + +         R T        +      A +            + +  G ++  K  
Sbjct: 243 MKAYEIPEAGRTARGTAVINLLQLQPGETITAVIPIREYNDNNYLFMATRNGIVKKTKVT 302

Query: 537 SV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590
                    + A+  ++ D L        T  I+L++  G        ++         +
Sbjct: 303 EYSNIRKNGIQAITIRDNDELIEVKLTDDTKDIMLVTKLGMCIRFKETDVRPTGRTSMGV 362

Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650
             + DL     +V   +      LL+VS KG        E     R GK        EK 
Sbjct: 363 IGM-DLMDEDQVVGMQIDSQGDSLLIVSEKGLGKRTLIEEFTTQHRGGKGVKCYKINEKT 421

Query: 651 KLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
             VV V        + ++     ++      I  + R   GV+L + +DG     + 
Sbjct: 422 GNVVGVKAVDDTREIMLITTEGIIIRIKAQDISILGRITSGVKLINLEDGVTVASVS 478


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/309 (48%), Positives = 217/309 (70%), Gaps = 1/309 (0%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+ D  KP HRRI++AM+++G+     +KKSARIVGEVIG  HPHGD +VYDS
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ G GNFG++DGDSA A RYTEARM++++  IL+ + +D +D++D 
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H V EI +  LA+ +NP+I I +L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
           +E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV
Sbjct: 181 MEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 239

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 299

Query: 338 RFPLNMNVL 346
            F +N+  L
Sbjct: 300 SFGINLLAL 308


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 149/307 (48%), Positives = 221/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+P++RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++DTY+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + +PVV PS+FPNLL NG +GIA GMA +IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 305

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 170/297 (57%), Positives = 226/297 (76%)

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            EK +I++LL S  +QW  +A EI EVK+ F+K+T++GRRRT F +   AD+  +QQAMI
Sbjct: 9   KEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQAIQQAMI 68

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
           EKEPITVVIS +GWIR+LK H  D + L FKEGD LK+A  A TTD+IL+++T GKA+TL
Sbjct: 69  EKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTL 128

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635
               L  GRGHGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E+E++ANT
Sbjct: 129 GGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELVANT 188

Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695
           RKGK  + V+  E+ +L+V V GDHVAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKDG
Sbjct: 189 RKGKQIMNVALPEETQLLVPVCGDHVAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDG 248

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           GISDV CF I +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 249 GISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 305


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 155/293 (52%), Positives = 205/293 (69%), Gaps = 1/293 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           QV K+ +IEK+AEL   KRI  + D+RDES  +   V+    R    D+++  
Sbjct: 240 QVNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQ 292


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 177/463 (38%), Gaps = 63/463 (13%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            V      P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L +A  NID I
Sbjct: 1   MVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPI 60

Query: 404 IAIIRNEDKPKPV-------------------------------------MVSRFSLTEN 426
           I +IR+   P                                            + LTE 
Sbjct: 61  IELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 120

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+  V+E F
Sbjct: 121 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 180

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                   RRT   E++        + +I +E + V +S++G+++          +    
Sbjct: 181 GDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGK 232

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596
             SA   KE D +   L A+T D IL  S+ G+ Y++    L        G  I  L+ L
Sbjct: 233 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPL 292

Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
             ++ I        ++   K+ + ++ G       +E       GK  +K+   +++  V
Sbjct: 293 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 352

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGL-T 710
              +G D V +     K++ F    +  M     GVR     +G    V+   +  G   
Sbjct: 353 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG--DKVVSLIVPRGDGA 410

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +           R   G +  K   R+G  + +
Sbjct: 411 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGA 453



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 20/232 (8%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 293 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 352

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 353 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 409

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 410 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 469

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
            L+   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 470 TLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 521


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 172/626 (27%), Positives = 305/626 (48%), Gaps = 37/626 (5%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
               ++   +E   + Y+   + +RA+PDLRDG KPVHRRI+++M    L     F KSA
Sbjct: 3   TTNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSA 59

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS--AAAYRYTEA 134
            + G+V+ KLHPHG  S Y S+V + Q      P++ G+GNFG         AA RY+E 
Sbjct: 60  NVAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEV 116

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++++++  ++Q  D++ VDF D Y+     P V P KFP++LA   SGI VG ++SIPS 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N++E+ EA +  I+  E +       ++ PDF TGG+IV+      +    GRG  ++R 
Sbjct: 177 NLKELTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +         I +TEIPY   +  +IEKI EL  A ++  + D++D +     ++  
Sbjct: 230 KAEI-----VKNEIHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R+ D ++L+E ++  + +++ F  NMN+L    +P+V+ +   + +WL  R   + R
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDD-LPKVLGVWQTIDKWLEWRTTCIKR 343

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--DKPKPVMVSRFSLTENQVDAIL 432
             S  ++ + R++ +L+GL    L+IDE I IIR    D+ +  +   F +   Q   + 
Sbjct: 344 GLSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSRDQIERNLQKHFGIDFEQAKEVA 403

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           N++LR++ +    +   ++D      E    ++ S  +    I   + E KE + K    
Sbjct: 404 NMKLRNINREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKE--- 460

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E++      L + +     +T+ ++  G+    K +       + K GD + 
Sbjct: 461 --RRTKIAELTEVKPVRLVEEV-PNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVL 513

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDS 610
                     IL+  +D   + +   ++   R +  G  +  +I  + N  IV+  + DS
Sbjct: 514 KVFETENKAEILIFGSDRVCHKVELKDIDETRANALGTYLPNMIR-DKNITIVSYSILDS 572

Query: 611 TCKLLVVS-SKGNAFIVEESEIIANT 635
           T K ++ + S      +       N 
Sbjct: 573 THKFIIAAYSNNRIAKINLEAFQGNR 598


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/307 (50%), Positives = 220/307 (71%), Gaps = 1/307 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+I  H + E+ E  LA  +NPEI+ ++L+E
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           YI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K
Sbjct: 181 YIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
           +RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F
Sbjct: 240 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYF 299

Query: 340 PLNMNVL 346
            +N+  L
Sbjct: 300 GINLLAL 306


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 149/309 (48%), Positives = 220/309 (71%), Gaps = 1/309 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
           VV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
           FPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEK
Sbjct: 181 FPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEK 239

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           IA+L+  K+I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  
Sbjct: 240 IADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLA 299

Query: 346 LSMGRVPQV 354
           L  G+   +
Sbjct: 300 LVDGQPKVL 308


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 158/439 (35%), Positives = 256/439 (58%), Gaps = 9/439 (2%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +   ++   + ER+  Y+   I++RAIPD RDG KPV RRI+++M  + L    AF+K
Sbjct: 14  ETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRK 73

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+IVGEV+G+ HPHGD S+Y++LVR++Q +   +PLI   GN G+ID D AAA RYTE+
Sbjct: 74  SAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTES 133

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+ +++ELIL+ +D   V     +++ + EPVV PS  PNLL NG+ GIA G AT IP H
Sbjct: 134 RLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPH 193

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +A + LI NP IS+E+L + + GPDFPTGG+ +   E I +++  G+G   + +
Sbjct: 194 NLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGV-IHGIEGIAQAFETGQGKINISS 252

Query: 255 RWCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           R+     E        I + E P+ V KS+L+  I  L+I K I  ++++RD+S  +   
Sbjct: 253 RYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGFS 312

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +        + + ++  +   +D+   +  NM  +     P++M L  +L  +L+H +++
Sbjct: 313 IYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENS-PKLMNLQMLLFTYLSHLKDI 371

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQ 427
             +   F ++  + R+EI++G +      DE+I +I+N D  K      +   F  T  Q
Sbjct: 372 NTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNIQ 431

Query: 428 VDAILNLRLRSLRKLEEYQ 446
             AI  LRL  L K+++ +
Sbjct: 432 ATAIAELRLYKLSKMDQLE 450


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 152/281 (54%), Positives = 210/281 (74%), Gaps = 3/281 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  LALIDNPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
           R  VE++ +  G   IV+TE+PYQ+ K+RLIEKIAEL+  K
Sbjct: 245 RSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 214/294 (72%), Gaps = 1/294 (0%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+V
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
             + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K
Sbjct: 181 VIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 239

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           ++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 293


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 213/294 (72%), Gaps = 1/294 (0%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           +  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV 
Sbjct: 181 EVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 239

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  
Sbjct: 240 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 293


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 154/285 (54%), Positives = 202/285 (70%), Gaps = 1/285 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+HAM+EM L +   ++KSA +VGEV+GK HPHGD S+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  R PLI GQGNFG+IDGD  AA RYTE R+ +V E +L  +D+D V+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +  +ALIDNP I + 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+E I GPDFPTGGII+  R  I  +Y  GRG   +R R  +E +      I++TEIPY
Sbjct: 181 ELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPY 239

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           QV K+ +IEK+AEL+  KRI  + D+RDES  +   V+    R  
Sbjct: 240 QVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDA 284


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 188/439 (42%), Gaps = 29/439 (6%)

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + ++T F +NM  L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+G
Sbjct: 1   TALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEG 59

Query: 393 LLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           L IA  NID II +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+ 
Sbjct: 60  LRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEE 119

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E  NL+A    + ++L   ++    I  E+ E+K  ++       RRT     +    + 
Sbjct: 120 EYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK-----RRTEIL--AGDLVSL 172

Query: 510 LQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTD 561
             + +I +E + + ++ RG+I+          +     +  +   E D ++  +   T D
Sbjct: 173 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHD 232

Query: 562 RILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLV 616
            +L  +  GK Y      +        G  I  L+ +   + +        +     L  
Sbjct: 233 TLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFF 292

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            +  G       S+     + G   +++   +++  V    G  ++ +  ++ + + F  
Sbjct: 293 TTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPE 352

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKR 733
           + I  M R   GVR    ++    +VI  ++ E     +    + Y +        L  R
Sbjct: 353 ENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNR 410

Query: 734 GGVGSLVPKGFPRSGKFLS 752
           GG+G        ++G  ++
Sbjct: 411 GGMGVKTVTITEKNGNLVA 429



 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 269 IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 328

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 329 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 387

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 388 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 447

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 448 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 481



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 263 IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 321

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 322 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 380

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 381 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 440

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 441 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 483


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 144/347 (41%), Positives = 234/347 (67%), Gaps = 8/347 (2%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L NGT+GIA
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT +P HN++E+  A + L+D+P+ ++ +L E+I+GPD+PT   I+  R  +++ Y 
Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG  R+RA + +E+       I+VT +P+QV  ++++E+IA  + AK++P++ D+RDE
Sbjct: 241 TGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295

Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           S  +   RIV+ P++  ++ D LM+ +F  +++E+ + +N+N++ + 
Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLD 342


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 153/347 (44%), Positives = 232/347 (66%), Gaps = 8/347 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + LR   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP   +  L++Y+ GPDFPT   I+     + + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA WC E        IV+T +P+QV  ++L+E+IA  + AK++P++ED+RDES  
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           +   RIV+ P++  +D DLLM  +F  +D+E  F +N+N++ +   P
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRP 343


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 107/485 (22%), Positives = 201/485 (41%), Gaps = 58/485 (11%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F       
Sbjct: 120 MKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVP---- 175

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
                  ++         + +I  E + V I++RG+I+          K       A+  
Sbjct: 176 ----RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTT 231

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIV 603
            + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L  ++ I+
Sbjct: 232 YDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIM 291

Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                  +D    L   +  G       SE       G   + +   +++   + V  D 
Sbjct: 292 AIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDE 351

Query: 661 -------------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
                                          +  V +    + F + ++ E+ R  +GV 
Sbjct: 352 NEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVT 411

Query: 689 LQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
              +K+     V    I  +    +  + +   +  N     L  RGG G +  K   ++
Sbjct: 412 AIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKT 471

Query: 748 GKFLS 752
            + +S
Sbjct: 472 KELIS 476


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 151/294 (51%), Positives = 213/294 (72%), Gaps = 1/294 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+I++L+EYI GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           A+L+  K+I  + D+RDES  +   V+    R  +  +++ +++  + ++T F 
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSFG 293


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 189/709 (26%), Positives = 336/709 (47%), Gaps = 53/709 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            N   +E+++ + L   +   +L YALS I  RA+PD RDG K VHRRII AM  + LD 
Sbjct: 91  ENYDEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++K A++VG+V+G  HPHGD+SVYD+L RL+Q F+ + PLI G GNFG+ + D  AA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 129 YRYTEARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+T  ++ ++   ++ + +D+   ++  + EP+V P + PN+L NG+SGIAVG+
Sbjct: 210 MRYTECRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 188 ATSIPSHNVQEICEAALAL---------------------IDNPEISIEKLLEYIIGPDF 226
           AT+IP HN  EI  A +                        D       +++  ++GPDF
Sbjct: 270 ATNIPPHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVDDVNGDKSAEVVNEVLGPDF 329

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PTGG+I  +RE++ + Y  G+G   +++R+  EE  +    IV+ +IPY  + + +IE I
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSRFVFEE--KLRISIVINQIPYNTRINDIIENI 387

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              I    I  + D++DES  +   ++    R++   + ++ I    +  T +  N N +
Sbjct: 388 NRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMTKLERLTEYNYNCNFI 447

Query: 347 S-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +     P    L  ILK WL  R EVL R+    +    + ++I+   +  YLNI+ II 
Sbjct: 448 TLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTIIN 507

Query: 406 IIRNEDK-PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             +N  K    ++   F L ++Q+ +++ L LR L +L    +  +      + E  +++
Sbjct: 508 SFQNHHKGVYKLLKEEFKLNDDQMKSVMRLTLRQLNQLNIENLNEKSAEYTKQIEFYENI 567

Query: 465 LNSGKQQWNQIACEIREVKEIFS----------KSTDLGRRRTTFCEVSRADKATLQQAM 514
           L +    +++I  ++ E++E F                    T   E +  +      ++
Sbjct: 568 LKNDNNLYSEIISDLTELREHFKNIKRNTLIIYTDEPNSFENTIEGEGAEGNTDGKVGSV 627

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
           +E +   ++ +  G I  +K       +   K   +L      HT       S D     
Sbjct: 628 VESDDNIIIYNRLGRISKIKLDKKFYKSNKNK---TLNTPNPVHTHSTSPDESQD----- 679

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                  S +   +     ID       V     +++ K++++   G  F V  S++   
Sbjct: 680 --KAETPSVKKSAKKSLNKID-ETEALEVGYCSNNNSNKIMMIMKNGRIFHVNSSKLKLC 736

Query: 635 TRKGKTFLKVS-SEEKMKLVVKVTGD---HVAVVG-ENRKLLIFSIDQI 678
            +    F  +  + +++   V  TG     + +VG  +  + +F+  ++
Sbjct: 737 KKGYDIFKYLGINNDQLIEYVTSTGKNIGDIIMVGYGSGVMSVFNAKKL 785


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 151/300 (50%), Positives = 217/300 (72%), Gaps = 1/300 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + ++T F +NM  L
Sbjct: 240 ADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 231/370 (62%), Gaps = 2/370 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +NT + E +K + L   + ER+  Y+   I+ERA+PD+RDG KPV RRI++AM + G  F
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KK+A+ VG V+G  HPHGD S+Y +LV L+Q +  R  LI   GN G++DGD  AA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++++ L+L+ +D+D V     +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN+ E+ +A + LI +P+  I++L+ YI GPDFPTGG+I+   + I ++Y  GRG
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLII-GNQGIKDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             +VRA+  ++        IV+TEIP+ V K+ L++KI E+ + K +  + ++RDE+   
Sbjct: 241 RIQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRH 300

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    + +D + ++  +F  +D++  +  NM  +     P  + L  IL  +L H+
Sbjct: 301 GLSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAI-DHMAPVQLGLKRILSSYLEHK 359

Query: 369 REVLFRRSSF 378
           +    +  +F
Sbjct: 360 KRRCIKTDTF 369


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 200/367 (54%), Gaps = 15/367 (4%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           ++GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAIL+ +LR L KLEE +I+ 
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           E D L  E++K++ LL S ++  N +  EI+   + F        RR+   E     KA 
Sbjct: 61  EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGD-----DRRSPLVEREE-AKAL 114

Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            ++ ++  E ITVV+S +GWIR  K H VD  +L++K GD+        +  + + L +D
Sbjct: 115 TERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSD 174

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629
           G++Y+L +  L S RG GE I   +++     I    + +     LV S  G  F+ +  
Sbjct: 175 GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGD 234

Query: 630 EIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           ++++  R GK  + +    ++   +++  +  D +  +    ++L+F I  +P++S+GKG
Sbjct: 235 DLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKG 294

Query: 687 VRLQSY---KDGGISDVIC--FKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            ++ +    K     +V+     + +G +  + +  R      +DL  + G+RG  G+L+
Sbjct: 295 NKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALL 354

Query: 741 PKGFPRS 747
           P+G  R 
Sbjct: 355 PRGLQRV 361


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 200/484 (41%), Gaps = 58/484 (11%)

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+ 
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKTVIIRRTI 59

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL++
Sbjct: 60  FELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDM 119

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F        
Sbjct: 120 KLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVP----- 174

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
                 ++         + +I  E + V I++RG+I+          K       A+   
Sbjct: 175 ---RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A+T D ++ ++  G+ Y L        S    G+A+  LI+L  ++ I+ 
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKXPEGSRTAKGKAVVNLINLQADEKIMA 291

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +D    L   +  G       SE       G   + +   +++   + V  D  
Sbjct: 292 IIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDEN 351

Query: 661 ------------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                                         +  V +    + F + ++ E+ R  +GV  
Sbjct: 352 EETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTA 411

Query: 690 QSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +K+     V    I  +    +  + +   +  N     L  RGG G +  K   ++ 
Sbjct: 412 IKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTK 471

Query: 749 KFLS 752
           + +S
Sbjct: 472 ELIS 475


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 106/484 (21%), Positives = 202/484 (41%), Gaps = 58/484 (11%)

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+ 
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKTVIIRRTI 59

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL++
Sbjct: 60  FELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTELQANAILDM 119

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F        
Sbjct: 120 KLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFDVP----- 174

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
                 ++         + +I  E + V I++RG+I+          K       A+   
Sbjct: 175 ---RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L  ++ I+ 
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMA 291

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +D +  L   +  G       SE       G   + +   +++   + V  D  
Sbjct: 292 IIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEN 351

Query: 661 ------------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                                         +  V +    + F + ++ E+ R  +GV  
Sbjct: 352 EEVELLDDDNFNDENINPDENAIESVKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTA 411

Query: 690 QSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +K+     V    I  +    +  + +   +  N     L  RGG G +  K   ++ 
Sbjct: 412 IKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTK 471

Query: 749 KFLS 752
           + +S
Sbjct: 472 ELIS 475



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 65/213 (30%), Gaps = 41/213 (19%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     ++       +  G ++           SV + A++  E D L  A
Sbjct: 284 QADEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTA 343

Query: 555 LHA--------------HTTD---------------RILL-LSTDGKAYTLPAGNLLSGR 584
           +                +  D               ++L  ++  G     P   +    
Sbjct: 344 IIVQRDENEEVELLDDDNFNDENINPDENAIESVKGKMLFAVTKKGMCIKFPLAKVREIG 403

Query: 585 GHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                +  +     N ++V    + +   ++L +S+KG        E    +R GK  + 
Sbjct: 404 RVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVIC 463

Query: 644 VSSEE---KMKLVVKVTGD-HVAVVGENRKLLI 672
           +   +   ++  VV V     +  +  + K++ 
Sbjct: 464 MKLTDKTKELISVVIVDESMDLMALTSSGKMIR 496


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 146/301 (48%), Positives = 214/301 (71%), Gaps = 1/301 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           + G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I+ L+E I GPDFPT G 
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+ 
Sbjct: 181 IL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVR 239

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            K+I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L  G+ 
Sbjct: 240 DKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQP 299

Query: 352 P 352
            
Sbjct: 300 K 300


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 201/484 (41%), Gaps = 58/484 (11%)

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+ 
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKTVIIRRTI 59

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AIL++
Sbjct: 60  FELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAILDM 119

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F        
Sbjct: 120 KLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDV------ 173

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
                 ++         + +I  E + V I++RG+I+          K       A+   
Sbjct: 174 --LRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVT 604
           + D ++    A+T D ++ ++  G+ Y L    +   S    G+A+  LI+L  ++ I+ 
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMA 291

Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660
                 +D    L   +  G       SE       G   + +   +++   + V  D  
Sbjct: 292 IIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDEN 351

Query: 661 ------------------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
                                         +  V +    + F + ++ E+ R  +GV  
Sbjct: 352 EETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTA 411

Query: 690 QSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
             +K+     V    I  +    +  + +   +  N     L  RGG G +  K   ++ 
Sbjct: 412 IKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTK 471

Query: 749 KFLS 752
           + +S
Sbjct: 472 ELIS 475



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 41/213 (19%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     ++       +  G ++           SV + A++  E D L  A
Sbjct: 284 QADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTA 343

Query: 555 LHA--------------------HTTDRILL----------LSTDGKAYTLPAGNLLSGR 584
           +                        +D  L+          ++  G     P   +    
Sbjct: 344 IIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIG 403

Query: 585 GHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                +  +     N ++V    + +   ++L +S+KG        E    +R GK  + 
Sbjct: 404 RVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVIC 463

Query: 644 VSSEE---KMKLVVKVTGD-HVAVVGENRKLLI 672
           +   +   ++  VV V     +  +  + K++ 
Sbjct: 464 MKLTDKTKELISVVIVDESMDLMALTSSGKMIR 496


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/328 (40%), Positives = 221/328 (67%), Gaps = 1/328 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ EI +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA
Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRA 246

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +  +E +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++ 
Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLN 342
              + ++ + ++  +F  ++++  +  N
Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|332637207|ref|ZP_08416070.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella cibaria KACC 11862]
          Length = 758

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 167/738 (22%), Positives = 312/738 (42%), Gaps = 61/738 (8%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L  ++++ +  Y ++   +R++P++ DG KPV RRI++AM+   L   A FKKS  +VG
Sbjct: 20  DLDQSMKQAFTNYGIAVASDRSVPNVLDGLKPVQRRILYAMTMAKLSPTAKFKKSQTVVG 79

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+G  HPHGD   Y S+  L Q FV     I G G+F +I G+ AAA RYTE R+++  
Sbjct: 80  DVMGNWHPHGDN--YGSVDYLTQNFVFPLAPIEGHGSFTDISGNPAAAARYTEVRLSRFG 137

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEI 199
           +L++  + E  V + D Y+     P VFP+K P LL NG  +GIAVG  +SI  HN  + 
Sbjct: 138 QLMVNDLSEKLVPYEDNYDNTKRMPRVFPAKLPYLLINGVKTGIAVGFTSSIAPHNPVDA 197

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                  I  P+++++K +  + GPD PTGG +      +   Y+ G G F+      + 
Sbjct: 198 TRLLKQYIKTPKMTLDKAISILQGPDLPTGGTLYG---DVRSYYKTGVGKFQNAG--TII 252

Query: 260 EVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR-----IV 312
           +       +++TE+PY++    +  ++K+ +LI   ++  +  I D + ++        +
Sbjct: 253 DSDEDKNTLIITEVPYRMGGSINSYLDKVKDLIADGKLKPIRSIDDFTTDEDIANNKVRI 312

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                 + D +     +F  +D+   + L    L      +   L   L+     +  ++
Sbjct: 313 EVTLQNNYDHEQAKTLLFQKTDLRQTYSLEWMALDGLTPKRY-TLMQYLQTVANFQHTLV 371

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------KPKPVMVSR 420
            R     ++    R+EI+ GL+     I  I+   +N D            K  P  ++ 
Sbjct: 372 VREYKADLEKASARLEIVDGLIQVPDLIQAIVHAAQNTDGKADLMQVLQGLKTIPAQMAS 431

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           FS TE Q DAI ++R+  L +++   + +E  +L          +     +   ++  + 
Sbjct: 432 FSFTERQADAIASMRVYQLNRVDAQALVAEKADLEERIAMAKRYIEEPDLRVQLLSERLD 491

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           E  +   K    G RRTT  + S       +  +I   P+T+ I   G+I+      V+ 
Sbjct: 492 EQIKALKKDG-FGSRRTTLGDESELKAKVAKTVII--NPVTITIDRYGYIKMTDKREVET 548

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------AIQLL 593
                   D ++  L     D + + + DG+   +   +L   +           A+   
Sbjct: 549 -------DDEIQFVLQTTDDDWLEMFTADGRMLQVGLSSLKKYKARDNNRGDAAMAVFAD 601

Query: 594 IDLNHNQDIV----TAFVYDSTCKLLVVSSKGNAFI--VEESEIIANT-RKGKTFLKVSS 646
                +  +V       + ++  ++++VS +G A      ES++   T RK      V  
Sbjct: 602 NGYTGDDRVVLWTTRKHLDEAGTEIVMVSKRGLAKRFATAESKLTTKTLRKTVEAYPVKD 661

Query: 647 E-EKMKLVVKVTGDHV----AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD----GGI 697
             +++  V  V+   +     +     +     +  +   +   G   Q++ D      +
Sbjct: 662 GSDELLFVQLVSQTEIKSFDIIAIRGEEYKRIKLSAVKLQASAAGAGTQTFVDKKNSADL 721

Query: 698 SDVICFKICEGLTWIDSA 715
             V      E      + 
Sbjct: 722 DAVYILNGPETDLLKVAG 739


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   + +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M  +    
Sbjct: 2   DQTFDNDRIVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVS 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              +KK AR+VGEV+GK HPHGD SVY +L R+AQ +  RY L+ GQG FG++DGDS AA
Sbjct: 62  TQPYKKCARVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAA 121

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE R++++ E I+  +D++ VD  + +++   EP V P+K PNLL NG +GIAVGMA
Sbjct: 122 MRYTECRLSKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMA 181

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T++P+HN+ E+ +   A IDNP+I  + L++YI GPDFPTG   +     + ++Y  GRG
Sbjct: 182 TNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGA-YIYGLAGVRDAYETGRG 240

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +E        IVVTEIPY V K+ L++ IA+L    +I  + ++ DES   
Sbjct: 241 RIVMRAKAEIEST-ETHDKIVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQ 299

Query: 309 VRIVLFP 315
              ++  
Sbjct: 300 GMRIVVD 306


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 145/336 (43%), Positives = 226/336 (67%), Gaps = 8/336 (2%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  +  +++++ GPD+PT   I+  +  I + YR GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSGR 241

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA W  E        IV+T +P+QV  ++L+E+IA  + AK++P+++D+RDES  
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           +   RIV+ PK+  +D DLLM  +F  +D+E  + +
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRV 332


>gi|265983859|ref|ZP_06096594.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662451|gb|EEZ32712.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 269

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 151/269 (56%), Positives = 202/269 (75%)

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541
           ++E F  +T LG+RRTTF      D   + QAMIE+EP+T+V+S +GW+R++K H  D S
Sbjct: 1   MREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFS 60

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            L FKEGD LK+A HA TTD++L  +T GK +T+ A  L  GRGHGE I++L+D+ ++QD
Sbjct: 61  TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQD 120

Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661
           I+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK  + V + ++ KL  +V+GDH+
Sbjct: 121 ILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHI 180

Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721
           AVVGENRK+L+F +  IPEM+RGKGVRLQ YKDGG+ DV  F I +GL+W DSA R++NR
Sbjct: 181 AVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNR 240

Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           S+ +L+ W+G R   G LVPKGFPRSGKF
Sbjct: 241 SKEELVEWIGARASAGRLVPKGFPRSGKF 269


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 213/302 (70%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AF+K A+IVGE
Sbjct: 1   LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE++MT V+E
Sbjct: 61  VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           L+L+G+D+DAVDFRDTY+E +SEPVV P  FPNLLANG+SGIAVGMATSIPSHN  E+C+
Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVRA+W  E++
Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-RSL 320
           GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R + + +N  S+
Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRCLSWCRNLGSV 300

Query: 321 DP 322
           DP
Sbjct: 301 DP 302


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 139/266 (52%), Positives = 189/266 (71%), Gaps = 1/266 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+  DF   +KK
Sbjct: 6   KEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  +D++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+    +ALI +P I+I+ L+ +I GPDFPT  + +  R+ I ++YR GRG   +RA
Sbjct: 186 NLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAM-ISGRKGIEDAYRTGRGKIYLRA 244

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKS 280
           +  +E    G   IVV EIPYQV K+
Sbjct: 245 KAEIETDANGKETIVVNEIPYQVNKA 270


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 130/326 (39%), Positives = 211/326 (64%), Gaps = 1/326 (0%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + +R+  Y+   I+ERA+PD+RDG KPV RRI++AM+  G      F+KSA+ VG VIG 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD SVY+++VRL+Q + QR  LI   GN G++DGD  AA RYTEAR+++++  +++
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D++ VDF   +++ D EP VFP+ +PNLL NG +GI+ G AT IP HN+ E+ +A + 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           LID+P+ S+  L+++I GPDFPTG I ++    I ++Y  G+G   VR++  +EEV  G 
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAI-LQGVAGIKQAYETGKGKIIVRSKTRIEEVRGGK 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ EIPY+V K+ L+ K+ E+ + K++  + ++RDES  +   ++    +  +   +
Sbjct: 240 EQIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGI 299

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRV 351
           +  +   +D++  +  NM  +   + 
Sbjct: 300 LNYLLKNTDLQVAYNFNMVAIDKKKT 325


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 145/271 (53%), Positives = 201/271 (74%), Gaps = 2/271 (0%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++A  +L  + ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMARLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N+ E+ +  L LI NP+ISI++L+ +I GPDFPT  I + SR  I+E+YR GRG   +RA
Sbjct: 186 NLGEVIDGCLVLIANPDISIDELMTHIPGPDFPTASI-INSRAGIIEAYRTGRGRIYMRA 244

Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIE 284
           R  +E++ + G+  IV+TE+PYQ+ K+RLIE
Sbjct: 245 RSIIEDIDKVGAEQIVITELPYQLNKARLIE 275


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/456 (21%), Positives = 170/456 (37%), Gaps = 83/456 (18%)

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------------- 416
           ++ RR+ F ++    R  IL+GL IA  NID II +I+    P                 
Sbjct: 1   MVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDV 60

Query: 417 -----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
                                     ++ LTE Q  AIL+LRL  L  LE  +I  E   
Sbjct: 61  AQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQ 120

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           LL    ++  +LNS ++    I  E+ ++++ F        RRT   E++ A      + 
Sbjct: 121 LLELIAELLHILNSPERLMEVIQEELEKIRDEFGDE-----RRT---EITAASHDIDIED 172

Query: 514 MIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
           +IE+E + V +S  G+++  K              SA   K+ D ++  L A+T D IL 
Sbjct: 173 LIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILC 232

Query: 566 LSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620
            ST G+ Y L    L   S    G  I  ++ L  N+ I        ++    +L+ ++ 
Sbjct: 233 FSTRGRLYWLKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEEGKYVLMATAN 292

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSID--- 676
           G     + S        G   + ++  +++  V    G D + +  +  K++ F+     
Sbjct: 293 GTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRD 352

Query: 677 -----------------QIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGR 717
                             +  M R   GVR    +DG    V+   + +G    + +   
Sbjct: 353 SETGEVKRDPETGEELLALRPMGRTATGVRGIRLQDG--QKVVSLIVPKGDGPVLTATEN 410

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +           R   G +  K   R+GK + +
Sbjct: 411 GFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVGA 446



 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 94/272 (34%), Gaps = 33/272 (12%)

Query: 479 IREVKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533
           ++  +  F+     GR        E +    A L     E+    ++ +  G ++     
Sbjct: 242 LKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEEGKYVLMATANGTVKKTDLS 301

Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG------------ 578
              +  S  + A++  EGD L      H  D I+L S  GK                   
Sbjct: 302 LYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRD 361

Query: 579 -----NLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
                 LL+ R  G     +  I L   Q +V+  V      +L  +  G        + 
Sbjct: 362 PETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGPVLTATENGFGKRTPLEDY 421

Query: 632 IANTRK--GKTFLKVSS-EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
            A +R   G   +KVS    K+   V+V   + + ++ +   L+   + ++  + R  +G
Sbjct: 422 PAKSRATQGVVSIKVSERNGKVVGAVQVDDTNEIMLISDQGTLVRTRVSEVSVVGRNTQG 481

Query: 687 VRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
           VRL    +G  +  +   +  E L   D  G 
Sbjct: 482 VRLIRTVEGEHVVGLQRIEEVEELQAFDEDGN 513


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 216/298 (72%), Gaps = 2/298 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  L L+DN + S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VR
Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVR 246

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           A+  +E+       IV+ E+PYQ  K+RLIE+IAEL+  ++I  + ++RDES ++   
Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIR 303


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMAYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 155/367 (42%), Positives = 246/367 (67%), Gaps = 9/367 (2%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           L+ GQGN+     D  S AA RYTE+R+++ +EL+L  +     D+   ++    EP + 
Sbjct: 61  LVDGQGNWRRSPDDPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKML 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228
           P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P  ++++LL+ + GPD+PT
Sbjct: 121 PARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYPT 180

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
              I+ SR  I + Y  GRG  R+RA W  E+       +V++ +P QV  +R++E+IA 
Sbjct: 181 EAEIITSRAEIRKMYEKGRGSVRMRAVWKKED-----GAVVISALPQQVSGARVLEQIAA 235

Query: 289 LIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            +    +P+++D+RDES  +   R+V+ P++  +D D +M  +   +++E  + + +N++
Sbjct: 236 QMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNMI 295

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +   P V  L  IL EWL  RR+ + RR ++R++ + +R+ +L+G L+ +LNI+E+I I
Sbjct: 296 GLDGRPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVIDI 355

Query: 407 IRNEDKP 413
           I NED+P
Sbjct: 356 IHNEDEP 362


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 151/271 (55%), Positives = 204/271 (75%), Gaps = 1/271 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+ 
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
            + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EY
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+
Sbjct: 181 IPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 239

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           RLIEKIA+L+  K+I  + D+RDESA +   
Sbjct: 240 RLIEKIADLVRDKKIEGITDLRDESARNGMR 270


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 138/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 138/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  GRG   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGRGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 138/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQV+ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 201/489 (41%), Gaps = 63/489 (12%)

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ R
Sbjct: 2   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKTVIIR 60

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AI
Sbjct: 61  RTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAI 120

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E+K  F     
Sbjct: 121 LDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKFDVP-- 178

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    ++         + +I  E + V I++RG+I+          K       A+
Sbjct: 179 ------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAV 232

Query: 544 HFKEGDSLKIALHAHTTDRILLL----STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
              + D ++    A+T D ++ +    S   K Y +P G   S    G+A+  LI+L  +
Sbjct: 233 TTYDDDFIESFFTANTHDTLMFVLIEDSFMVKVYKIPEG---SRTAKGKAVVNLINLQAD 289

Query: 600 QDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + I+       +D    L   +  G       SE       G   + +   +++   + V
Sbjct: 290 EKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTAIIV 349

Query: 657 TGDH-------------------------------VAVVGENRKLLIFSIDQIPEMSR-G 684
             D                                +  V +    + F + ++ E+ R  
Sbjct: 350 QRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVS 409

Query: 685 KGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
           +GV    +K+     V    I  +    +  + +   +  N     L  RGG G +  K 
Sbjct: 410 RGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKL 469

Query: 744 FPRSGKFLS 752
             ++ + +S
Sbjct: 470 TDKTKELIS 478



 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 41/213 (19%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           +      A +     ++       +  G ++           SV + A++  E D L  A
Sbjct: 287 QADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAINLDENDELVTA 346

Query: 555 LHA--------------------HTTDRILL----------LSTDGKAYTLPAGNLLSGR 584
           +                        +D  L+          ++  G     P   +    
Sbjct: 347 IIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFPLAKVREIG 406

Query: 585 GHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
                +  +     N ++V    + +   ++L +S+KG        E    +R GK  + 
Sbjct: 407 RVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVIC 466

Query: 644 VSSEE---KMKLVVKVTGD-HVAVVGENRKLLI 672
           +   +   ++  VV V     +  +  + K++ 
Sbjct: 467 MKLTDKTKELISVVIVDESMDLMALTSSGKMIR 499


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 135/286 (47%), Positives = 204/286 (71%), Gaps = 1/286 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDL 239

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           RDES  +   ++    R  + ++L+ +++  + ++T F +N+  L 
Sbjct: 240 RDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV 285


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NID++I
Sbjct: 298 ALDNIDDVI 306


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 136/309 (44%), Positives = 208/309 (67%), Gaps = 3/309 (0%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D+LVR+AQ F  RY L+ G GNFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPY 275
           +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+VTE+PY
Sbjct: 121 ELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPY 178

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           QV K++LIE IA+++  K+I  + D+RDES  +   ++    R  +P++ +  ++  + M
Sbjct: 179 QVNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKM 238

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  IL+GL+I
Sbjct: 239 QDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLII 297

Query: 396 AYLNIDEII 404
           A  NIDE+I
Sbjct: 298 ALDNIDEVI 306


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/473 (21%), Positives = 192/473 (40%), Gaps = 64/473 (13%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+ F +Q    R  IL+GL 
Sbjct: 1   MESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLK 59

Query: 395 IAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L  LE  +I++EL
Sbjct: 60  IALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENEL 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L+ E  +++ +L S     N I  E++E++  F              ++         
Sbjct: 120 AELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP--------RITQIEDDYDDIDI 171

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  E + V I++RG+I+          K       A+   + D ++    A+T D +
Sbjct: 172 EDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTL 231

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +   S    G+A+  LI+L   + I+       +D +  L   +
Sbjct: 232 MFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFT 291

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------------------ 660
             G       SE       G   + +   +++   + V  D                   
Sbjct: 292 KNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIE 351

Query: 661 -------------------VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
                              +  V +    + F + ++ E+ R  +GV    +K+     V
Sbjct: 352 NLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELV 411

Query: 701 ICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
               I  +    +  + +   +  N     L  RGG G +  K   ++   +S
Sbjct: 412 GAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLIS 464



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 13/236 (5%)

Query: 465 LNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP---- 519
           L + ++    I   +  E K +   + +   +RT   E        ++   +++      
Sbjct: 266 LQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVT 325

Query: 520 -ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPA 577
            I V         +    +++   +   + ++L+      T  ++L  ++  G     P 
Sbjct: 326 AIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPL 385

Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             +         +  +     N ++V    + +   ++L +S+KG        E    +R
Sbjct: 386 AKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSR 445

Query: 637 KGKTFLKVSSEE---KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GV 687
            GK  + +   E    +  VV V     +  +  + K++   +  I +  R   GV
Sbjct: 446 GGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV 501


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 135/625 (21%), Positives = 239/625 (38%), Gaps = 104/625 (16%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT++ +HN+ E+  AA  L+ + + ++E+L+ Y+ GPD+PTGG I+  R+ I E+Y  G
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTII-GRDGIREAYATG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG    RA   +E V      IVVTE+PY V   ++IE+I++ +  +++  +    D + 
Sbjct: 60  RGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTD 119

Query: 307 E-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++       DP  ++  +F  + ++  F +N   L  GR    M L  +L+ W+
Sbjct: 120 RHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPH-TMGLKEMLQVWV 178

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422
            HRR V+ RRS +R +    R+ +++GLL+A L+IDE+I +IR  D     K  ++  F 
Sbjct: 179 DHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMVVFD 238

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L E Q   IL+LRLR L K+   ++++E D+L    E++  +L S +     +  E+ E 
Sbjct: 239 LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQVVTDEMDEA 298

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAM---------------------------- 514
              +        RRT   +       T   A                             
Sbjct: 299 VAKWGSP-----RRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAEADV 353

Query: 515 ---------------------IEKEPITVVISNRGWIRSLKSHSVDL-SALHFKE----G 548
                                IE EP  V++S  G I      ++D+ +A    +     
Sbjct: 354 AAAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTTPSAMDVFNARSTSDERLRD 413

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-------------AIQLLID 595
           D +       T     L+++ G+       +L +                    +    D
Sbjct: 414 DQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPATATLSLKGGVQADELIGMTESTD 473

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSK-------GNAFIVEESEIIANTRKGKT-------- 640
               + ++TA   +        +S        G A       +   TR G          
Sbjct: 474 PIRGERVITAIAMEQPTSG--KTSAKDESEDGGAAEAKPLPSLAIGTRNGVIKRWNREAP 531

Query: 641 -------FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
                   + +   +++        D  +  +  +  LL F    +    R   G+    
Sbjct: 532 TTMDSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIK 591

Query: 692 YKDGGISDVICFKICEGLTWIDSAG 716
             +G             + W    G
Sbjct: 592 LAEGARVAAFNVVPAGKVAWTYEEG 616



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 36/177 (20%)

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650
           +IDL    ++V A V +   +L+ +SS  +    E   +     T  G   +K++   ++
Sbjct: 539 VIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARV 598

Query: 651 K---------------------------LVVKVTGDHVAV-VGENRKLLIFSIDQIPEMS 682
                                       +V+ V GD  A+   EN    +  ++  P   
Sbjct: 599 AAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKG 658

Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           R   GVR Q +  G  + ++ +     L    SAG      + D+     +R G G 
Sbjct: 659 RATGGVRSQRFLKGQNTLILAWVGLYPLHASTSAGSPVELPKPDM-----RRDGSGV 710


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 141/291 (48%), Positives = 205/291 (70%), Gaps = 1/291 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L  G  
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEP 290


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 181/620 (29%), Positives = 311/620 (50%), Gaps = 65/620 (10%)

Query: 5   NISNSNTLVE--------ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           ++SNS+T VE        E+++ + L   +   +L YALS I  RA+PD RDG K VHRR
Sbjct: 79  DLSNSSTGVEVLDGDSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRR 138

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           II AM  + LD    ++K A++VG+V+G  HPH D+SVYD+L RL+Q F+ + PLI G G
Sbjct: 139 IIWAMHMLKLDPNGQYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHG 198

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELIL-QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           NFG+ + D  AA RYTE R+T  +++I+   ++ + +D+   ++  + EP+V P + PN+
Sbjct: 199 NFGS-NNDPPAAMRYTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNI 257

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE-------------------- 215
           L NG+SGIAVG+AT+IP HN  E+  A +  I +   +                      
Sbjct: 258 LINGSSGIAVGLATNIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKN 317

Query: 216 -KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG---------- 264
            +++  ++GPDFPTGG+I  +RE++ + Y  G+G   +++++  EE  R           
Sbjct: 318 VEIVNEVMGPDFPTGGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKD 377

Query: 265 -------SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
                     IV+ +IPY  + + +IE I   I    I  + D++DES  +   ++    
Sbjct: 378 IKFKHNSRISIVINQIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELK 437

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           R++   + ++ I       T +    N ++     P    L  ILK WL  R +VL R+ 
Sbjct: 438 RNISSVIEIQEIMAKLQRLTEYNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKY 497

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-PKPVMVSRFSLTENQVDAILNLR 435
              +  + + ++I+   +I YLNI+ II   +N  K    V+   F L ++Q+ +++ L 
Sbjct: 498 KHLLLKLKKNLDIINAYIIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRLT 557

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-------- 487
           LR L +L    +K +      + E  +++LN+    +N+I  ++ E+K+ F         
Sbjct: 558 LRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKNIKRNTLI 617

Query: 488 KSTDLGRRRTTFCE----VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
             TD G    T  E         +  +  +++E +   ++ ++ G I  +K       + 
Sbjct: 618 IYTDEGSNFETTVEGVEGPEGTSEDKVDPSVVESDDNIIIYNSLGRISKIKLDQKFYKSN 677

Query: 544 HFKEGDSLKIALHAHTTDRI 563
             K   S++I+   H+    
Sbjct: 678 KNK---SIRISNPIHSHSTT 694


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 139/259 (53%), Positives = 185/259 (71%), Gaps = 2/259 (0%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +  LA I++  ISIE L+EYI GPDFPT  I +  R  I E+YR GRG   +RAR 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARA 246

Query: 257 CVE-EVGRGSWCIVVTEIP 274
            VE +   G   I+V EIP
Sbjct: 247 EVEADAKTGRETIIVHEIP 265


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 143/271 (52%), Positives = 198/271 (73%), Gaps = 1/271 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           A+L+  K+I  + D+RDES      ++    
Sbjct: 240 ADLVRDKKIEGITDLRDESDRTGMRIVIEIR 270


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 139/286 (48%), Positives = 204/286 (71%), Gaps = 1/286 (0%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG+
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIR 179

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D
Sbjct: 180 KAYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITD 239

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           +RDES  +   ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 240 LRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 135/280 (48%), Positives = 201/280 (71%), Gaps = 1/280 (0%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           FG++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL 
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R 
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRS 179

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  
Sbjct: 180 GIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEG 239

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
           + D+RDES      ++    R  + ++++ +++  + ++T
Sbjct: 240 ITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 279


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 146/263 (55%), Positives = 197/263 (74%), Gaps = 1/263 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           T G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA
Sbjct: 181 TAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 239

Query: 288 ELIIAKRIPLLEDIRDESAEDVR 310
           +L+  K+I  + D+RDES  +  
Sbjct: 240 DLVRDKKIEGITDLRDESDRNGM 262


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 144/278 (51%), Positives = 201/278 (72%), Gaps = 3/278 (1%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           + + +++  + E N   V++   + + YL YA+S I  RA+PD+RDG KPVHRR+++AM 
Sbjct: 1   MSDNTDNPEVFEPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAME 60

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF  R  LI GQGNFG++D
Sbjct: 61  VLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVD 120

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RYTE RM +++  +L+ +++D VDF D Y+  +SEP V P++ PNLL NG+SG
Sbjct: 121 GDSAAAMRYTEIRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGSSG 180

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVGMAT+IP HN+ E+  A L +IDN E+SI++LL+ I GPDFPT GI +   + I ++
Sbjct: 181 IAVGMATNIPPHNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAGI-INGADGIRQA 239

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280
           Y  G+G   +R+R  VE  G     IVVTE+PYQV K+
Sbjct: 240 YETGKGKIYLRSRSHVE--GEDKQSIVVTELPYQVNKA 275


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 134/279 (48%), Positives = 197/279 (70%), Gaps = 1/279 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++AM+++G+     +KKSARIVGEVIGK HP GD +VY+S VR+AQ F   Y L+ G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            GNFG +DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           LL NG +GIAVGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+ 
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQIL- 179

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 180 GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 239

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 240 IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 278


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 163/399 (40%), Gaps = 55/399 (13%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           +  KR+  + D+RDES  D   ++    R    D+++  ++  + ++T F  NM  L+ G
Sbjct: 1   MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALN-G 59

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             P++M L  +L+ +   R EV+ RR+ F +     R  +L GL IA  NIDE+I +IR 
Sbjct: 60  GRPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRT 119

Query: 410 EDKP-----------------------------KPVMVSRFSLTENQVDAILNLRLRSLR 440
              P                             +      + L+E Q  AIL+LRL+ L 
Sbjct: 120 SPDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLT 179

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            L   +I  EL  L  E      +L S  +    +  E+ EV+E+F+             
Sbjct: 180 ALXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRK--------T 231

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552
           E+  +D +   + +I +E + V +S+ G+++          K      + +  ++ D + 
Sbjct: 232 EIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVT 291

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDL-NHNQDIVTAFVYD 609
               A T   +L  S  G+AY      L   +    G+A+  ++ L N  + I T     
Sbjct: 292 RLFVASTHTPVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLP 351

Query: 610 STC------KLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
                     ++  ++ GN    + S+     R GK  +
Sbjct: 352 EDEASWETLDVMFATASGNVRRNKLSDFTTVNRNGKIAM 390


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 145/261 (55%), Positives = 197/261 (75%), Gaps = 1/261 (0%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F 
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226
           V PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
           PT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKI
Sbjct: 181 PTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKI 239

Query: 287 AELIIAKRIPLLEDIRDESAE 307
           A+L+  K+I  + D+RDES  
Sbjct: 240 ADLVRDKKIEGITDLRDESDR 260


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 140/251 (55%), Positives = 183/251 (72%), Gaps = 2/251 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCI 268
            +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G   I
Sbjct: 181 EDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETI 239

Query: 269 VVTEIPYQVQK 279
           +V EIPYQV K
Sbjct: 240 IVHEIPYQVNK 250


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 205/312 (65%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDN-PPQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ 
Sbjct: 179 GISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 129/259 (49%), Positives = 181/259 (69%), Gaps = 4/259 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+    LA IDN EI+I++L+++I GPDFPT  + +  R+ I E+YR 
Sbjct: 178 GMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAAL-INGRKGIEEAYRT 236

Query: 246 GRGGFRVRARWCVEEVGRG 264
           GRG   VRAR  VE   +G
Sbjct: 237 GRGKVYVRARATVETNEKG 255


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/325 (39%), Positives = 200/325 (61%), Gaps = 6/325 (1%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        ++  Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +A IDNPE + ++LL+ + GPDFPTGGI + ++  ++  Y  G G  ++
Sbjct: 181 PHNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGI-IANKSDLLNIYETGSGRIKL 239

Query: 253 RARWCVEEVGR--GSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           RA+  VE   R      ++++EIPY       ++ +  IA+L+ +K++  + DI ++S +
Sbjct: 240 RAKLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNK 299

Query: 308 DVRIVLFPKNRSLDPDLLMESIFML 332
           +   ++    +  D + +   ++  
Sbjct: 300 EGIRIVLELKKDADIEKIKNILYKK 324


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 206/312 (66%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIDLKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 153/513 (29%), Positives = 286/513 (55%), Gaps = 43/513 (8%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           +   Y+ YA++ I  RA+PD+ DG KPVHRRI++ M ++  ++   F K ARIVGEV+GK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+YD+LVR+AQ F  +Y LI GQGNFG+IDGD+AAA RYTE ++ +++     
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ V F + Y+ ++ EP+V P + PNLL NG+ GIAVGM+T+IP HN  +    A+ 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           L+   E  I+ L++ +  PDFPTGG I++  + +  +Y  G+G   + +++  E++ + +
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIKISK-LHNAYYYGKGSVTINSKFIFEKINKKT 239

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I++TEIPYQ+ K +++E+I +LI  K+I  + +++DES +    ++    ++L+ + +
Sbjct: 240 N-IIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELKKNLNKNKI 298

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++ +F  + ++    +N+  L    +P+ + L  IL  ++ +R++++ ++  F ++ + +
Sbjct: 299 LKILFKKTSLQHTININIIALIKN-IPKKLNLKKILIYFIKYRKKLIIKKLKFILKKLKK 357

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------------------- 419
           +  +L+G ++   NI++ I I++        + +                          
Sbjct: 358 KKYLLEGFVVVINNINKFIKIVKKSKNNIEAIKNITSNNWKLFIKLKIINFNKKNKKYIK 417

Query: 420 ------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                       ++ ++  Q   +L LRL  + KLE Y+I  +   ++ +      +L  
Sbjct: 418 NIKKKIKIPYTKKYKISVIQSKLVLKLRLNKIIKLESYKIFKKYKLIIIKILIYFIILKK 477

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             + ++ I  E+  +K  ++        R T  
Sbjct: 478 KNKIYDVIFEELNYIK--YNTKIKNKDIRLTNI 508


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 131/256 (51%), Positives = 183/256 (71%), Gaps = 1/256 (0%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           H++ E+ +  LAL  +PEISI  L+EYI GPDFPT G+I+  R  I  +Y  GRG   VR
Sbjct: 186 HHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVR 244

Query: 254 ARWCVEEVGRGSWCIV 269
            R  +EE   G    V
Sbjct: 245 GRVDIEEKKNGKETEV 260


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/312 (43%), Positives = 205/312 (65%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL E
Sbjct: 298 KNTLIERFSLGE 309


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 205/312 (65%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++   ++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+       
Sbjct: 238 LKQVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 133/238 (55%), Positives = 174/238 (73%), Gaps = 1/238 (0%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG+
Sbjct: 1   IEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A 
Sbjct: 61  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAH 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 ELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVN 180

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             LA ID+  ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE
Sbjct: 181 GCLAYIDDENISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYLRARAEVE 237


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 204/312 (65%), Gaps = 6/312 (1%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            NG+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GK 119

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I 
Sbjct: 120 SGIRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKIT 178

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L     PQ++ 
Sbjct: 179 GISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNH-PQILN 237

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L  +L  ++  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR        
Sbjct: 238 LKQVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKTSEIA 297

Query: 414 KPVMVSRFSLTE 425
           K  ++ RFSL+E
Sbjct: 298 KNTLIERFSLSE 309


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 133/514 (25%), Positives = 247/514 (48%), Gaps = 25/514 (4%)

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            + ++ V+F   +++ + EP V PS FPNLL NGT+GIA+GMAT +P HN +EI +A +A
Sbjct: 7   ELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEIIDATIA 66

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG---GFRVRARWCVEEVG 262
            + NP +S  +L   + GPDFPTGGI +   + I ES+  GR      ++ +++ +    
Sbjct: 67  KLQNPNLSFSQLCSIVKGPDFPTGGI-IYGTKGIEESFETGRTLKNKIQLFSKFVITSDN 125

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +  + I +TEIPY V KS L+  I  LI    +  + +I+D+S  +   ++    +  + 
Sbjct: 126 KNKY-IEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVITLEKDANE 184

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
             +M  +F  + ++  +  N  V+     PQ++ L+ ++  ++ H  ++  +  ++ ++ 
Sbjct: 185 KSIMRYLFSKTKLQINYSYNNMVI-KNNSPQLLNLNNLITSYVEHISDIKTKTLTYDVEK 243

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----VSRFSLTENQVDAILNLRLRS 438
              R+EI+ G L      DEII +IR  +  K  +    ++ F  T+NQ  AI  LRL  
Sbjct: 244 HKLRLEIVLGFLKVTEITDEIIEVIRKSEGSKAGVIQDLMNIFGFTKNQATAIAELRLYK 303

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L K +  + K+E D L +E   I+SLL    +    +   ++E++  F         R T
Sbjct: 304 LSKTDYNEFKNEKDYLESEINYINSLLEDKDKFTFYLINLLKELRNEF------PSPRRT 357

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF---KEGDSLKIAL 555
                  +    ++ +I++E I V IS  G+I+ L    ++ +       K+ D L    
Sbjct: 358 QIVDREYNFDYDEKDLIKEEIINVAISKFGYIKRLSQKVIESNDFSTYVLKDEDYLTFYN 417

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDS 610
             +T D  L+ +  G    +P   +     + +G  +   +DL   + +V+      ++S
Sbjct: 418 QVNTMDTFLIFTNFGNYAIIPIYKIEECKWKDNGIHLSDFVDLQSGEVVVSVIEVSDWNS 477

Query: 611 TCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLK 643
              + + +  G        +  ++ T K  T + 
Sbjct: 478 NLFVTIATRNGIVKRTPIKDFEVSRTVKTYTAIS 511


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 131/247 (53%), Positives = 177/247 (71%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA ID+  I++E L+++I GPDFPT  I +  R  I E+YR GRG   +RA+  VE 
Sbjct: 181 NGCLAYIDDENITVEGLMQHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRAKAEVEA 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DEKSGRE 246


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 160/466 (34%), Positives = 246/466 (52%), Gaps = 36/466 (7%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++ L    +F+K AR+VGEV+GK HPHGDQ+VYD+LVRLAQ FV R+PLI G GNFG+
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           +DGD  AA RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           +SGIAVGM+T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVG------------------------------RGSWCIV 269
             +Y+ GRG   +R R+ +E                                 +    +V
Sbjct: 180 PGAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLV 239

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +TE+PY V KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +
Sbjct: 240 ITELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLL 299

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              ++++   P+++  L  G  P    L  +L  W+A R   L R  +        R  +
Sbjct: 300 LKHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHL 359

Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEY 445
           L+GLL A   +D+++  +R     D+ K  +       +  Q  A+L L L  L +LE  
Sbjct: 360 LEGLLRAVSLMDDVVQTVRESLSADEAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERR 419

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           Q++ E         ++ SLL   ++ +  +  E++  K        
Sbjct: 420 QLEEEAKAQKNRLSELASLLAHDREIYELMVEELQAHKTRHKAPRK 465



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 40/137 (29%)

Query: 644  VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVI 701
            + SEEK           + +V      L F    +      + +GVR    + G     +
Sbjct: 996  LKSEEK----RDTNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASV 1051

Query: 702  CFKICE--------------------------------GLTWIDSAGRSYNRSENDLLGW 729
                 E                                 L  + +AG       + L   
Sbjct: 1052 AVVPPEVKEDKAKTESRKEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSAL--R 1109

Query: 730  LGKRGGVGSLVPKGFPR 746
            + +R GVG  V +   R
Sbjct: 1110 MQRRRGVGVRVIRLVKR 1126


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 130/323 (40%), Positives = 200/323 (61%), Gaps = 7/323 (2%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E++        +++ Y+ YA+S I  RA+PD RDG KPV RR++++M E+GL +    
Sbjct: 1   MSEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y+SLV ++Q F +  PL+ G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           EAR+ ++ +   L  +D++ VDF   ++E + EP V P K PNLL NG  GIAVGM TSI
Sbjct: 121 EARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ E+ +A  A +    I+ E+L+EYI GPDFPTGG+++ +++ ++  Y  G G  +
Sbjct: 181 PPHNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGGLVI-NKKDLLNIYSSGTGKLK 239

Query: 252 VRARWCVEEVGRG--SWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +R +   E   +      +V++EIPY       S+ +     LI  K    + DI +ES+
Sbjct: 240 LRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESS 299

Query: 307 EDVRIVLFPKNRSLDPDLLMESI 329
           +D   ++    +  D + L +S+
Sbjct: 300 KDGIRIVLELRKGADVERLKKSL 322


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 130/260 (50%), Positives = 187/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 187/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 147/526 (27%), Positives = 254/526 (48%), Gaps = 34/526 (6%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +++  S   ++     V +   L + +L+YA   I  R + D RDG K V RRII +M 
Sbjct: 136 SNHVGESIKRIKGEYYDVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMY 195

Query: 63  EMGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           E+        +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG++
Sbjct: 196 EINKGAEKRSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSV 255

Query: 122 DGDSAAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + ++AA  RYTEA+++     +L    +E+ V++   ++  + EP VF SK P LL NG 
Sbjct: 256 EYNAAA-MRYTEAKISNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGC 314

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + ++IP HN+ ++    ++ + NP I  + L   I GPDF TGGII+     + 
Sbjct: 315 SGIAVSILSNIPCHNLVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQ 374

Query: 241 ESYRLGRGGFRVRARWCVEEVG----------------------RGSWCIVVTEIPYQVQ 278
             Y  GRG   +R+   +E                         RGS  +V+  +P  V+
Sbjct: 375 NVYHTGRGSIEIRSNVFLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVK 434

Query: 279 KSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI---FML 332
            + LIE +  ++  K+     +L+ IRDES ++   ++    ++   + + + +   F  
Sbjct: 435 PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKY 494

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + M+T +  N   +          L   L+ W  +R + +    + + + + + + I+  
Sbjct: 495 TQMQTTYHCNFVCIGHQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDL 554

Query: 393 LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            ++    I EII+ +   +N ++ K      F L + Q+  IL+++++ L  ++      
Sbjct: 555 YILIQKKILEIISFLQKNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGP 614

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             + +L        L+    +    I  E+  +K  +  S+     
Sbjct: 615 HKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGTSSAGRLP 660



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 13/201 (6%)

Query: 551  LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            +K ++     DR+LL  +  KAY L   +L   S    G  I  ++  +    I     +
Sbjct: 943  VKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK--SITGMAKF 1000

Query: 609  DSTCKLLVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            + + K L+V S  G   I+     +   +KG    K   +           D+  V   +
Sbjct: 1001 EESKKYLIVCSENGKMKIINNDVFLKKKKKGIRLFKNKKDIHFSYCNF--SDNCIVGTAS 1058

Query: 668  RKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLT----WIDSAGRSYNR 721
              ++ F +       +   G +  S  K+  + D++ ++  E        I  +   + +
Sbjct: 1059 GHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIFLSKGGHGK 1118

Query: 722  SENDLLGWLGKRGGVGSLVPK 742
              N     + KR G G  + K
Sbjct: 1119 MVNLGELKVQKRRGKGYKIMK 1139


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 146/359 (40%), Gaps = 26/359 (7%)

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
           ++ +  +++RF L+E Q  AIL ++LR L  LE   I++EL  LLA  EK+  +L   ++
Sbjct: 4   EEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQE 63

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             N I  E+ E+KE +       +RR+              + +I +E   V++++  +I
Sbjct: 64  ILNIIKNELIEMKEKYGD-----QRRSKMINHEL--GKFSDEELIPEEDSVVLLTSENYI 116

Query: 531 RS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           +                   +  KE D ++  + A T D +L  +  G+ + L A  + +
Sbjct: 117 KRTLASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPA 176

Query: 583 G--RGHGEAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTR 636
              +  G A   L+ L   + I     ++        L + + KG        +      
Sbjct: 177 ASLQAKGVAAVNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRT 236

Query: 637 KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694
            G   +K+   ++++ + + +G D + +     + + F+      M R  +GVR    + 
Sbjct: 237 NGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRP 296

Query: 695 GGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                V+   I  +  T +  +   Y ++         KRGGVG        ++G  +S
Sbjct: 297 N--DSVVGMDIANDDRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIIS 353



 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALH 556
            +       +   + +    + + +G I+              L A+   +GD L+    
Sbjct: 196 EKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWIKR 255

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKL 614
           +   D IL+ ++ G+A      +    R  G A + +  + L  N  +V   + +    L
Sbjct: 256 SSGNDDILISTSAGQAIRFNEKD---ARSMGRAARGVRGVRLRPNDSVVGMDIANDDRTL 312

Query: 615 LVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHV--AVVGENRK 669
           LV+S  G     + S   ++ R G   K  +  +    +  V  +  D +   +V    +
Sbjct: 313 LVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQGQ 372

Query: 670 LLIFSIDQIPEMSRGK-GVRLQS-YKDGGISDVICFK 704
            +  S+  IP + R   GVR+     D  ++ V    
Sbjct: 373 TIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMS 409



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 25/214 (11%)

Query: 465 LNSGKQQWNQIACEIREVKEIF---------------SKSTDLGRRRTTFCEVSRADKAT 509
           L   ++    I  E     + +                   ++        ++   D+  
Sbjct: 192 LQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELR 251

Query: 510 LQQAMIEKEPITVVISNRGWIRS-------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
             +     + I +  S    IR        +   +  +  +  +  DS+     A+    
Sbjct: 252 WIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRLRPNDSVVGMDIANDDRT 311

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKG 621
           +L++S +G        N  S +  G  I+  +       I++         + L+VS++G
Sbjct: 312 LLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQG 371

Query: 622 NAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653
               V   +I  +  T +G   +K S ++ +  V
Sbjct: 372 QTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASV 405


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 129/260 (49%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKS RIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRDANANVL 259


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 136/314 (43%), Positives = 189/314 (60%), Gaps = 3/314 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM E+GL     +KK AR+VGEV+GK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL-QGVDEDAVD 153
           YDSLVRLAQ F  R PL+ G GNFG++D D AAA RYTE R+   AE +L   +    V+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +RDT++    EPVV P+  PNLL NG+ GIAVG+A++IP HN+ E+  A   LI NPE++
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG-FRVRARWCVEEVGRGSWCIVVTE 272
            E+L+E + GPD+PTGG ++   E ++ +YR GRG     +     E    G   IV+TE
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPE-LLAAYRTGRGSAAAEKLAQAAETADGGPELIVITE 239

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           +PY V K  +               + D+RDES      V+       + +LL+  +F  
Sbjct: 240 LPYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKD 299

Query: 333 SDMETRFPLNMNVL 346
           + ++    +    L
Sbjct: 300 TRLQVCADVRWCGL 313


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 134/247 (54%), Positives = 180/247 (72%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE 
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEA 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DAKTGRE 246


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 146/519 (28%), Positives = 257/519 (49%), Gaps = 34/519 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E+  
Sbjct: 177 NPNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINK 236

Query: 67  DFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG+++ ++
Sbjct: 237 GSDRKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYNA 296

Query: 126 AAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AA  RYTEAR++     +L    +++ VD+   ++  + EP V  SK P LL NG SGIA
Sbjct: 297 AA-MRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIA 355

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V + T+IPSHN+ ++  A++  + N +I+ ++L   I GPDF TGGII+  ++++   Y 
Sbjct: 356 VSILTNIPSHNLVDVINASINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIYN 415

Query: 245 LGRGGFRVRARWCVEEVGRGSWCI----------------------VVTEIPYQVQKSRL 282
            G+G   +R+    E V      I                      ++  +P  V+ + L
Sbjct: 416 TGKGSIVIRSNVFYEYVRNNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNEL 475

Query: 283 IEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLSDME 336
           IE I  ++  ++     +L  IRDES ++   ++    +    + +      +F  + ME
Sbjct: 476 IENIVTVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSME 535

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +  N   +          L   L+ W  +R + + +    +   + + + I+   L  
Sbjct: 536 INYHCNFVCIGYENSYTQFSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNIIDLYLTI 595

Query: 397 YLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
              I +II+ +      + +     S F L E+Q+  IL+++++ L  ++      + +N
Sbjct: 596 QKKILDIISFLHKNQNIEQIQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIQKNN 655

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           ++ + +    ++++ ++    I  E+  +K  +S S  +
Sbjct: 656 IIKKIKSNQYIIDNVQEIKQIIINELIHIKNKYSLSKKI 694


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 131/243 (53%), Positives = 175/243 (72%), Gaps = 2/243 (0%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+  A+KKSARIVG+VIG
Sbjct: 1   ELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L
Sbjct: 61  KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELL 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
             ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L
Sbjct: 121 ADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCL 180

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGR 263
           A ID+  I++E L+++I GPDFPT  I +  R  I E+YR GRG   +RA+  VE +   
Sbjct: 181 AYIDDENITVEGLMQHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRAKAEVEADEKS 239

Query: 264 GSW 266
           G  
Sbjct: 240 GRE 242


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 138/377 (36%), Gaps = 49/377 (12%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL  L  LE  +I  E   LL E   +  +L S ++    I 
Sbjct: 9   RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIR 68

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  ++  FS +     RRT   E++ A      + +I +E + V +S+ G+++     
Sbjct: 69  EELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLS 120

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                +      SA   KE D ++  L A+T D ILL ST GK Y +    L   S    
Sbjct: 121 DYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTAR 180

Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G+ I  L+ L  N+ I        +     + + +  G        +       G   L 
Sbjct: 181 GKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALN 240

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------------------------- 677
           +  E+ +  V    G+  + +  +  K++ F   +                         
Sbjct: 241 LRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKG 300

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR     DG     +     EG   +      Y +  +        RG  
Sbjct: 301 VRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTENGYGKRTSLSEYPTKGRGTQ 359

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  K   R+G  + +
Sbjct: 360 GVVSIKVSERNGSVVGA 376



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 191 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 250

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 251 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 310

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 311 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 370

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 371 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 428

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 429 IDEIEESELPEGEEALVEND 448


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 133/247 (53%), Positives = 180/247 (72%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA ++N +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE 
Sbjct: 181 NGCLAYVENEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEA 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DAKTGRE 246


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 134/247 (54%), Positives = 179/247 (72%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE 
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEV 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DAKTGRE 246


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   V+    R  +  ++
Sbjct: 240 DRNGMRVVIELRRDANAHVI 259


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   V+    R  +  ++
Sbjct: 240 DRNGMRVVIELGRDANAHVI 259


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 130/260 (50%), Positives = 187/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ +  LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAGLIL-GRSGIRKAYET 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  + ++L
Sbjct: 240 DRNGMRIVIELRRGANANVL 259


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 132/247 (53%), Positives = 177/247 (71%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA +D+ +ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR  VE 
Sbjct: 181 NGCLAYVDDEDISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEV 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DAKSGRE 246


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1222

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 164/680 (24%), Positives = 298/680 (43%), Gaps = 43/680 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +NI+ S  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E
Sbjct: 159 NNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYE 218

Query: 64  MGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
           +        +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI G GNFG+++
Sbjct: 219 INKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVE 278

Query: 123 GDSAAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            ++AA  RYTEA+++     IL    +++ V++   ++  + EP V  SK P LL NG S
Sbjct: 279 YNAAA-MRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCS 337

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAV + +SIP HN+ ++    +  + N  I  ++L   I GPDF TGGII+   + +  
Sbjct: 338 GIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKN 397

Query: 242 SYRLGRGGFRVRARWCVEEVGRGS----------------------WCIVVTEIPYQVQK 279
            Y  G+G F +R+    E +                            I++  +P  V+ 
Sbjct: 398 IYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKP 457

Query: 280 SRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLS 333
           + LIE I  L+  K+     +L  IRDES ++   ++    +    + +      +F  +
Sbjct: 458 NELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYT 517

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
           +M+  +  N   +          L   +K W  +R + +      + + + +++ I+   
Sbjct: 518 NMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLY 577

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           LI    I +II   +     + +     + F L   Q+  IL+++L+ L  ++     S+
Sbjct: 578 LIIQNKILDIITFFQKNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFISQ 637

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE-------VS 503
            + ++ + +  D ++N+ +   N I  E+  +K  +       +               S
Sbjct: 638 RNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIHNLNKQCIIPSTPKYKYSYINS 697

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
                  +   I     TV  ++     S  +H +  +    K+ + ++  +H +     
Sbjct: 698 EYHPNFSKNKQIIDTYNTVSTNDNNINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISS 757

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
            + +      +    +L   +     +        + D     +Y++   L++++  G  
Sbjct: 758 DISNNIKN--SDKNSSLTKNQDSDNMMPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYI 815

Query: 624 FIVEESEIIANTRKGKTFLK 643
             ++ +E + N       L 
Sbjct: 816 KKIKINEKLKNHSNNIIKLS 835



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 11/200 (5%)

Query: 551  LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            +K ++     D+ILL     KA+ L   +L   S    G  I  +I  + N   +T F  
Sbjct: 916  IKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKNITGITKFQ- 974

Query: 609  DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668
            ++   L+V S  G   ++     +   +KG    K               D+  V  +N 
Sbjct: 975  ENKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKNIYFSYCNF--NDNCIVGTKNG 1032

Query: 669  KLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLT----WIDSAGRSYNRS 722
             ++ F +       +   G +  S  K+  + D++ ++  E        I      + + 
Sbjct: 1033 YIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNGFGKM 1092

Query: 723  ENDLLGWLGKRGGVGSLVPK 742
             N     + K+ G G  + K
Sbjct: 1093 INLNELKIQKKKGKGHRIMK 1112



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 514  MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
              E +   +V S  G ++ + +          +   +        + +  D  ++ + +G
Sbjct: 973  FQENKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKNIYFSYCNFNDNCIVGTKNG 1032

Query: 571  KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAF 624
                 P  +    + +       I L  N  +V    Y++  K      ++ V+  G   
Sbjct: 1033 YIIQFPLSSFKISKKNSLG-NKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNGFGK 1091

Query: 625  IVEESEIIANTRKGKT 640
            ++  +E+    +KGK 
Sbjct: 1092 MINLNELKIQKKKGKG 1107


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 133/247 (53%), Positives = 179/247 (72%), Gaps = 2/247 (0%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVI 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE- 259
              LA I++ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE 
Sbjct: 181 NGCLAYIEDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYIRARAEVEA 239

Query: 260 EVGRGSW 266
           +   G  
Sbjct: 240 DAKTGRE 246


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/288 (42%), Positives = 189/288 (65%), Gaps = 3/288 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 285


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  +  ++
Sbjct: 240 DRNGMRIVIEIRRDANAHVI 259


>gi|332273143|gb|AEE39255.1| DNA gyrase subunit A [Aeromonas simiae]
 gi|332273145|gb|AEE39256.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 174/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
            I++L+EYI GPDFPTGGI +  R  I+++YR GRG   VRA+  VE +   G   
Sbjct: 181 GIDELMEYIPGPDFPTGGI-INGRSGILQAYRTGRGSIYVRAKAEVEVDDKSGRET 235


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 158/693 (22%), Positives = 299/693 (43%), Gaps = 57/693 (8%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D +  S   ++     V +   L + +L+YA   I  R + D RDG K V RRII +M 
Sbjct: 159 SDLVDESIRGIKGEYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMY 218

Query: 63  EMGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           E+      + +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNFG++
Sbjct: 219 EINKGAEKSSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSV 278

Query: 122 DGDSAAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           + ++AA  RYTEA+++     IL    +++ +++   ++  + EP V  SK P LL NG 
Sbjct: 279 EYNAAA-MRYTEAKVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGC 337

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
           SGIAV + ++IP HN+ ++    ++ + +  I  ++L   I GPDF TGGII+     + 
Sbjct: 338 SGIAVSILSNIPCHNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQ 397

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGS----------------------WCIVVTEIPYQVQ 278
             Y+ G+G   +R+   +E                              +V+  +P  V+
Sbjct: 398 NVYQTGKGNIEIRSNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVK 457

Query: 279 KSRLIEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFML 332
            + LIE +  ++  K+     +L+ IRDES ++   ++    ++   + + +    IF  
Sbjct: 458 PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKY 517

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + M+  +  N   +          L   L+ W  +R   + +  + + Q + + + I+  
Sbjct: 518 TQMQITYHCNFVCIGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDL 577

Query: 393 LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            ++    I EII+ +   +N ++ K      F L + Q+  IL+++++ L  ++     +
Sbjct: 578 YILIQKKILEIISFLQKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCT 637

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS--TDLGRRRTTFCEVSRADK 507
             + +LA  E+   L+++  +    I  ++  +K  +  +        ++        + 
Sbjct: 638 HKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYGINSVGRFAPPQSVKYRYVYINP 697

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
                   E     V     G             A   K    +        T    + +
Sbjct: 698 PERNHHFKEHSLALVNAERDG------PSGYGGDAEDLKGERKISK----KDTLSDEIRN 747

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF------VYDSTCKLLVVSSKG 621
            + +   +    L   R      ++     + Q  + +       VY++   L++++  G
Sbjct: 748 QEEQQTPVEDPALPKARNLRGVKKIDPTTQYRQTYIDSIHTDVKNVYNNDYVLVLITYGG 807

Query: 622 NAFIVEESEIIANTRKGKTFLK-----VSSEEK 649
               ++ +E + N +     L      +   E+
Sbjct: 808 YVKKIKVAEKLKNHQNNIIKLSNVKYILKENEE 840



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 13/201 (6%)

Query: 551  LKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY 608
            +K ++     D++LL  +  KAY L   +L   S    G  I  +I  + N  I     +
Sbjct: 881  VKKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTKF 938

Query: 609  DSTCKLLVV-SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            +   K L+V S  G   ++     +   +KG    K   +           D+  V   +
Sbjct: 939  EENKKYLIVCSENGKMKVINNDVFLKKKKKGIRLFKNKKDIHFSYCNF--SDNCIVGTAS 996

Query: 668  RKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICE----GLTWIDSAGRSYNR 721
              ++ F +       +   G +  +  K+  + D++ +   E        I  +   + +
Sbjct: 997  GHIIQFPLANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQIIFLSKGGHGK 1056

Query: 722  SENDLLGWLGKRGGVGSLVPK 742
              N     + K+ G G  + K
Sbjct: 1057 MINLEELKVQKKKGKGYKIMK 1077


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 135/260 (51%), Positives = 186/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
             +   ++    R  +  ++
Sbjct: 240 DRNGMRIVIEIRRDANAHVI 259


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/290 (42%), Positives = 190/290 (65%), Gaps = 3/290 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+    +
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSE 287


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 121/289 (41%), Positives = 189/289 (65%), Gaps = 3/289 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYV 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+    +
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSE 286


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 121/287 (42%), Positives = 188/287 (65%), Gaps = 3/287 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+   
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 185/260 (71%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDHPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 122/289 (42%), Positives = 189/289 (65%), Gaps = 3/289 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L   + PQV+ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+    +
Sbjct: 238 NFQKDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSE 286


>gi|332273147|gb|AEE39257.1| DNA gyrase subunit A [Aeromonas simiae]
          Length = 235

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 175/236 (74%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD+
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDR 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI+N +I
Sbjct: 121 DWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIENGDI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
            I++L+EYI GPDFPTGGI +  R  I+++YR GRG   VRA+  VE +   G   
Sbjct: 181 GIDELMEYIPGPDFPTGGI-INGRSGILQAYRTGRGSIYVRAKADVEVDDKSGRET 235


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 121/285 (42%), Positives = 188/285 (65%), Gaps = 3/285 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I IIR+ 
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|332273153|gb|AEE39260.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273155|gb|AEE39261.1| DNA gyrase subunit A [Aeromonas schubertii]
 gi|332273157|gb|AEE39262.1| DNA gyrase subunit A [Aeromonas schubertii]
          Length = 235

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 128/231 (55%), Positives = 170/231 (73%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 DWVPNYDGTELIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            I+ L+EYI GPDFPTGGI +  R  I+++YR GRG   VRA+  VE   +
Sbjct: 181 GIDDLMEYIPGPDFPTGGI-INGRSGIIQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|332273135|gb|AEE39251.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273137|gb|AEE39252.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273139|gb|AEE39253.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273141|gb|AEE39254.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
          Length = 235

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 175/236 (74%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDDKSGRET 235


>gi|332273149|gb|AEE39258.1| DNA gyrase subunit A [Aeromonas diversa]
 gi|332273151|gb|AEE39259.1| DNA gyrase subunit A [Aeromonas diversa]
          Length = 235

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 170/231 (73%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           ++   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LALI +  I
Sbjct: 121 EWVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLALIADGSI 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
            I+ L+EYI GPDFPTGGI +  R  I+++YR GRG   VRA+  VE   +
Sbjct: 181 GIDDLMEYIPGPDFPTGGI-INGRSGIIQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 184/260 (70%), Gaps = 1/260 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDS
Sbjct: 1   MTSDQPNKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y  
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 179

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES
Sbjct: 180 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 239

Query: 306 AEDVRIVLFPKNRSLDPDLL 325
                 ++    R  + +++
Sbjct: 240 DRTGMRIVIEIRRDANANVI 259


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 120/282 (42%), Positives = 186/282 (65%), Gaps = 3/282 (1%)

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYET 119

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES
Sbjct: 120 GKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 178

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++
Sbjct: 179 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYI 237

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
             +++V+ RR+ F +     R  IL+GL+IA  NIDE+I II
Sbjct: 238 NFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 120/282 (42%), Positives = 186/282 (65%), Gaps = 3/282 (1%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S  +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  +
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHY 237

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           +  +++V+ RR+ F +     R  IL+GL+IA  NIDE+I I
Sbjct: 238 INFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 279


>gi|332273089|gb|AEE39228.1| DNA gyrase subunit A [Aeromonas cavernicola]
          Length = 235

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 172/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/348 (29%), Positives = 172/348 (49%), Gaps = 15/348 (4%)

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           +I IIRNED+PKPV+++RF L++ Q + IL+ +LR L +LEE  I+SE D L  E+++I+
Sbjct: 1   MIHIIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEIN 60

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L+S  Q    I  E+    + F  +      R       +A +A  +  ++  EP+TV
Sbjct: 61  VILDSDVQLKKLIKDELLADAKTFGDA------RRAPLVARQAAQAIDESELVASEPMTV 114

Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
           V+S +GWIR+ K H VD S + ++EGD L  A+   +T ++  L ++G+AY+     L S
Sbjct: 115 VLSEKGWIRAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPS 174

Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
            RG+GE +                  D+    ++ SS G  FI     +    + GK  +
Sbjct: 175 ARGNGEPLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMI 234

Query: 643 KVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKD 694
            ++   ++  +  +T    D +  V     LL  +  ++PE+ +GKG +L          
Sbjct: 235 HLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLAT 294

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
             +  VI       L  + S  R+ + S  DL  +L  RG  G L+P+
Sbjct: 295 ERLVAVIAVASSHTL-LLYSGERTMHLSFKDLEAYLDTRGSRGQLLPR 341


>gi|332273065|gb|AEE39216.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273067|gb|AEE39217.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273069|gb|AEE39218.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273071|gb|AEE39219.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
 gi|332273073|gb|AEE39220.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDDK 230


>gi|332273079|gb|AEE39223.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273081|gb|AEE39224.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273083|gb|AEE39225.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273085|gb|AEE39226.1| DNA gyrase subunit A [Aeromonas veronii]
 gi|332273087|gb|AEE39227.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|332273091|gb|AEE39229.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273093|gb|AEE39230.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273095|gb|AEE39231.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273101|gb|AEE39234.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273107|gb|AEE39237.1| DNA gyrase subunit A [Aeromonas enteropelogenes]
 gi|332273123|gb|AEE39245.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273125|gb|AEE39246.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273127|gb|AEE39247.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273129|gb|AEE39248.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273131|gb|AEE39249.1| DNA gyrase subunit A [Aeromonas jandaei]
 gi|332273133|gb|AEE39250.1| DNA gyrase subunit A [Aeromonas jandaei]
          Length = 235

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 174/231 (75%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|332272951|gb|AEE39159.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272953|gb|AEE39160.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272955|gb|AEE39161.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272957|gb|AEE39162.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272959|gb|AEE39163.1| DNA gyrase subunit A [Aeromonas bestiarum]
 gi|332272979|gb|AEE39173.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 173/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTGRET 235


>gi|332273057|gb|AEE39212.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273059|gb|AEE39213.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273061|gb|AEE39214.1| DNA gyrase subunit A [Aeromonas sobria]
 gi|332273063|gb|AEE39215.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 235

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 1/234 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +   
Sbjct: 181 TIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTHR 233


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|332273109|gb|AEE39238.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273111|gb|AEE39239.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273113|gb|AEE39240.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273121|gb|AEE39244.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 235

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 174/231 (75%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 136/351 (38%), Gaps = 23/351 (6%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           M+SRF L + Q  AIL++RL  L  LE  ++++E   L A+      +L+  ++    I 
Sbjct: 1   MISRFGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIY 60

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+ ++++ F      G +R T    S    +   + +IEK+ I + +++ G+I+     
Sbjct: 61  DELLDIQKRF------GDKRRTEIGASEV-VSIEDEDLIEKQNILLTVTHNGYIKRMPIQ 113

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGH 586
                      +  +  ++GD ++  +++ T D +L  +  GK Y+  A  +        
Sbjct: 114 EFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAK 173

Query: 587 GEAIQLLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G  +  L+ L   + + T            L  V+  G       SE       G   L 
Sbjct: 174 GLPVVNLLQLEKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALT 233

Query: 644 VSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701
           +   +++  V+   G    ++G +    + F+   +  M R   GVR  + ++     V 
Sbjct: 234 LKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRGINLREHDYV-VG 292

Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
              +      +  + + Y +        +  RGG G        ++G    
Sbjct: 293 SGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAG 343



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E     +  +       +     ++  G ++              L AL  K+GD L   
Sbjct: 184 EKGEKVQTVINIPEGADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNV 243

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
           L       IL+ +  G A T   G++ +       ++  I+L  +  +V + +  +  ++
Sbjct: 244 LTTDGKQNILIGTHLGYAVTFNEGDVRAMGRTAAGVRG-INLREHDYVVGSGILGADDQV 302

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
           LV+S KG       SE     R GK      +   +     + +  + + V V+  +  +
Sbjct: 303 LVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIM 362

Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + F ID + +  R   GVRL    D      +     E
Sbjct: 363 IRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTE 400



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585
           N G +R++   +  +  ++ +E D +  +      D++L++S  G     PA        
Sbjct: 265 NEGDVRAMGRTAAGVRGINLREHDYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGR 324

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLK 643
            G+ I+       N  +    + +S   ++V+++ G        ++    R   G   +K
Sbjct: 325 GGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIK 384

Query: 644 VSSEEKM--KLVVKVTGDH 660
           VS + ++    VV    + 
Sbjct: 385 VSDDSQVASLTVVPTEEEQ 403


>gi|332272961|gb|AEE39164.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272963|gb|AEE39165.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272965|gb|AEE39166.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272967|gb|AEE39167.1| DNA gyrase subunit A [Aeromonas piscicola]
 gi|332272969|gb|AEE39168.1| DNA gyrase subunit A [Aeromonas piscicola]
          Length = 235

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/236 (55%), Positives = 173/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTGRET 235


>gi|332272939|gb|AEE39153.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272941|gb|AEE39154.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272943|gb|AEE39155.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272945|gb|AEE39156.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272947|gb|AEE39157.1| DNA gyrase subunit A [Aeromonas salmonicida]
 gi|332272949|gb|AEE39158.1| DNA gyrase subunit A [Aeromonas salmonicida]
          Length = 235

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDDK 230


>gi|332272991|gb|AEE39179.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272993|gb|AEE39180.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272995|gb|AEE39181.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272997|gb|AEE39182.1| DNA gyrase subunit A [Aeromonas eucrenophila]
 gi|332272999|gb|AEE39183.1| DNA gyrase subunit A [Aeromonas eucrenophila]
          Length = 235

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGNL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYISGPDFPTGAI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDDK 230


>gi|332273075|gb|AEE39221.1| DNA gyrase subunit A [Aeromonas allosaccharophila]
          Length = 235

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLSDLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDDK 230


>gi|332272971|gb|AEE39169.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272973|gb|AEE39170.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272975|gb|AEE39171.1| DNA gyrase subunit A [Aeromonas popoffii]
 gi|332272977|gb|AEE39172.1| DNA gyrase subunit A [Aeromonas popoffii]
          Length = 235

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/234 (55%), Positives = 172/234 (73%), Gaps = 1/234 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENSDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +   
Sbjct: 181 TIDELMTYITGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDDKTHR 233


>gi|332273001|gb|AEE39184.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273003|gb|AEE39185.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273005|gb|AEE39186.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273007|gb|AEE39187.1| DNA gyrase subunit A [Aeromonas tecta]
 gi|332273009|gb|AEE39188.1| DNA gyrase subunit A [Aeromonas tecta]
          Length = 235

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 172/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYISGPDFPTGAI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDDK 230


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 174/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ ++ GPDFPTGGI +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTHVTGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEKSGRET 235


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 133/254 (52%), Positives = 186/254 (73%), Gaps = 1/254 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDESAEDVRIVL 313
           D+RDES      ++
Sbjct: 240 DLRDESDRTGMRIV 253


>gi|332273043|gb|AEE39205.1| DNA gyrase subunit A [Aeromonas bivalvium]
 gi|332273045|gb|AEE39206.1| DNA gyrase subunit A [Aeromonas bivalvium]
          Length = 235

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 174/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           ++++L+ Y+ GPDFPTGGI +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TVDELMAYVTGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDDKSGRET 235


>gi|332273077|gb|AEE39222.1| DNA gyrase subunit A [Aeromonas veronii]
          Length = 235

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|332273097|gb|AEE39232.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273099|gb|AEE39233.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273103|gb|AEE39235.1| DNA gyrase subunit A [Aeromonas aquariorum]
 gi|332273105|gb|AEE39236.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 174/231 (75%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 174/236 (73%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ ++ GPDFPTGGI +  R  IV++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTHVTGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEKSGRET 235


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 116/280 (41%), Positives = 183/280 (65%), Gaps = 3/280 (1%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETG 119

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES 
Sbjct: 120 KGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 178

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++ 
Sbjct: 179 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYIN 237

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
            +++V+ RR+ F +     R  IL+GL+IA  NIDE+I I
Sbjct: 238 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 277


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 132/251 (52%), Positives = 183/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVIE 250


>gi|332273115|gb|AEE39241.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273117|gb|AEE39242.1| DNA gyrase subunit A [Aeromonas hydrophila]
 gi|332273119|gb|AEE39243.1| DNA gyrase subunit A [Aeromonas aquariorum]
          Length = 235

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 129/231 (55%), Positives = 174/231 (75%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYITGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|332273025|gb|AEE39196.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/236 (53%), Positives = 172/236 (72%), Gaps = 2/236 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWC 267
           +I++L+ Y+ GPDFPTGGI +  R  I+++YR GRG   VRA+  VE +   G   
Sbjct: 181 TIDELMTYVTGPDFPTGGI-INGRSGIIQAYRTGRGSVYVRAKAEVEVDEKTGRET 235


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 161/223 (72%), Gaps = 1/223 (0%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  AA RYTE R+ + A  +
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           L  +D++ VDFRD Y+   SEPVV P+KFPNLL NG  GIAVGMAT+IP HN+ E+ +  
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 223


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/251 (52%), Positives = 183/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMKIVIE 250


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYISGPDFPTGAI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 130/251 (51%), Positives = 181/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+++I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 TGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVIE 250


>gi|332272981|gb|AEE39174.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272983|gb|AEE39175.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272985|gb|AEE39176.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272987|gb|AEE39177.1| DNA gyrase subunit A [Aeromonas molluscorum]
 gi|332272989|gb|AEE39178.1| DNA gyrase subunit A [Aeromonas molluscorum]
          Length = 235

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 172/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY ++ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENNDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYISGPDFPTGAI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|332273029|gb|AEE39198.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ Y+ GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYVTGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|332273021|gb|AEE39194.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 126/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ Y+ GPDFPTGGI +  R  I+++YR GRG   VRAR  VE   +
Sbjct: 181 TIDELMTYVTGPDFPTGGI-INGRSGIIQAYRTGRGSVYVRARAEVEVDEK 230


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 131/251 (52%), Positives = 181/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVIE 250


>gi|332273047|gb|AEE39207.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273049|gb|AEE39208.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273051|gb|AEE39209.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273053|gb|AEE39210.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|332273055|gb|AEE39211.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 235

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ ++ GPDFPTGGI +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTHVTGPDFPTGGI-INGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|332273023|gb|AEE39195.1| DNA gyrase subunit A [Aeromonas media]
 gi|332273027|gb|AEE39197.1| DNA gyrase subunit A [Aeromonas media]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N  +
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGAL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ Y+ GPDFPTGGI +  R  I+++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYVTGPDFPTGGI-INGRSGIIQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/251 (52%), Positives = 181/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVIE 250


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 130/251 (51%), Positives = 181/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     ++KSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVVE 250


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 133/251 (52%), Positives = 183/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+    A+KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E+I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +++   G   IVVTEIPYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++  
Sbjct: 240 SDRTGMRIVIE 250


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 119/284 (41%), Positives = 191/284 (67%), Gaps = 5/284 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G AT IP HN+ EI EA +  +DNP  + + +++ + GPDFPTG  I++  + I ++Y+ 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTG-GIIQGIDGIRKAYQT 235

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
           G+G   VR++  +E++  G   I + EIPY+V K+ L++++ EL
Sbjct: 236 GKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDEL 279


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 135/248 (54%), Positives = 185/248 (74%), Gaps = 1/248 (0%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           ++DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG
Sbjct: 61  SVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNG 120

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I
Sbjct: 121 AAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGI 179

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
            ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + 
Sbjct: 180 RKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGIT 239

Query: 300 DIRDESAE 307
           D+RDES  
Sbjct: 240 DLRDESDR 247


>gi|332273011|gb|AEE39189.1| DNA gyrase subunit A [Aeromonas sp. MDC 2467]
 gi|332273013|gb|AEE39190.1| DNA gyrase subunit A [Aeromonas sp. MDC 2473]
 gi|332273015|gb|AEE39191.1| DNA gyrase subunit A [Aeromonas sp. MDC 2468]
 gi|332273017|gb|AEE39192.1| DNA gyrase subunit A [Aeromonas sp. MDC 2469]
 gi|332273019|gb|AEE39193.1| DNA gyrase subunit A [Aeromonas sp. MDC 2472]
          Length = 235

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 170/231 (73%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALI+N ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I+ L+ Y+ GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDDLMTYVTGPDFPTGAI-INGRSGIVQAYRTGRGSIYVRAKAEVEVDEK 230


>gi|332273031|gb|AEE39199.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273033|gb|AEE39200.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273035|gb|AEE39201.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273037|gb|AEE39202.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273039|gb|AEE39203.1| DNA gyrase subunit A [Aeromonas encheleia]
 gi|332273041|gb|AEE39204.1| DNA gyrase subunit A [Aeromonas encheleia]
          Length = 235

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 127/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           D+   Y+  +  P V P+K P LL NG+SGIAVGMAT+IP HN+ EI    LALIDN ++
Sbjct: 121 DWVPNYDGTEMIPAVMPTKIPTLLINGSSGIAVGMATNIPPHNLTEIVNGCLALIDNGDL 180

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263
           +I++L+ YI GPDFPTG I +  R  IV++YR GRG   VRA+  VE   +
Sbjct: 181 TIDELMTYISGPDFPTGAI-INGRAGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 121/214 (56%), Positives = 160/214 (74%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR+VG
Sbjct: 1   NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVV 180

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
              LA ID+  ISIE L+E+I GPDFPT  II  
Sbjct: 181 NGCLAYIDDENISIEGLMEHIPGPDFPTAAIING 214


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 120/239 (50%), Positives = 169/239 (70%), Gaps = 1/239 (0%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L EE    V++   +   YL YA+S I  RA+PD+RDG KPVHRRI++ M++MGL    A
Sbjct: 2   LTEERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRA 61

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA+IVGE++G  HPHGD ++YD+LVR+AQ F  RY L+ GQGN+G++DGD  AA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRY 121

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEAR+T++A  +L  +D++ VDF  TY+E D EP+V P+K PNLL NG  GIAVG AT+I
Sbjct: 122 TEARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNI 181

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P+HN+ E+  A L +++NP  ++ +L++ I GPDFPT G  +   + I ++Y  G G  
Sbjct: 182 PTHNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAG-FIYGTQGIRDAYEHGAGAV 239


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 191/445 (42%), Gaps = 26/445 (5%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D++  +  NM  ++    P++M +  +L  ++ H++E++ +RS + ++    
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARA 59

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL+ A   +DE+I +IR        K  + +++  +E Q +AI++L+L  L   
Sbjct: 60  RQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNT 119

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ +  +      R T  + 
Sbjct: 120 DIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA------RRTEVQA 173

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHAHT 559
              +     + ++  E + V ++  G+++     S   S    L  KE D        ++
Sbjct: 174 EITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNS 233

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQDIVTAF---VYDSTCK 613
            D +LL ++ G     P   L   R    G+ +  L  DL+  ++I +A     +    +
Sbjct: 234 LDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR 293

Query: 614 LLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671
            L V+  G       +        K    +K+  ++++  V  + G + + +  +N   L
Sbjct: 294 FLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGL 353

Query: 672 IFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729
            +SI +IPE   R  GV+  + K D  +   I     E    + +  R   +        
Sbjct: 354 RYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFE 413

Query: 730 LGKRGGVGSLVPKGFPRSG--KFLS 752
              R   G L+ +   +S   +F+ 
Sbjct: 414 PISRAKRGLLMLREL-KSNPHRFIG 437


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 131/251 (52%), Positives = 181/251 (72%), Gaps = 1/251 (0%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEARM++++  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I ++Y 
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYE 179

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GR    +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 180 SGRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 239

Query: 305 SAEDVRIVLFP 315
           S      ++F 
Sbjct: 240 SDRTGIKIVFE 250


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 133/245 (54%), Positives = 183/245 (74%), Gaps = 1/245 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + E+ +  LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDESA 306
           RDES 
Sbjct: 240 RDESD 244


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 155/591 (26%), Positives = 269/591 (45%), Gaps = 69/591 (11%)

Query: 3   VDNISNSNTLVEENVKAV-SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           + +I N+    +E+++ +  L    E  +L YA   I ERA+P + DG KPV RRI+HAM
Sbjct: 1   MSDIDNTQP-ADESLQNILHLGDMYENWFLDYASYVILERAVPSVEDGLKPVQRRILHAM 59

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EM       F K A ++G  +   HPHGD S+ D++V L Q  +    LI  QGN+G++
Sbjct: 60  KEMD---DGRFNKVANVIGSTMQ-FHPHGDASIGDAIVNLGQKDL----LIDTQGNWGDV 111

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             GD AAA RY EAR+++ A  +  G +     ++ +Y+   +EP+  P KFP LLA G 
Sbjct: 112 RTGDDAAAARYIEARLSKFA--LEVGFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQGA 169

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T I  HN  E+ EA++  +           ++ I PDFPTGG+I       V
Sbjct: 170 EGIAVGLSTKILPHNFIELLEASIKYLKGK--------KFEIFPDFPTGGMID------V 215

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +Y  GR G +VR R  +EE  +    +++ ++PY V  + L+E I +     +I  ++ 
Sbjct: 216 ANYNDGRRGGKVRVRAHIEE--KDKKTLLIKDVPYGVTTTALMESIVKANDNGKIK-IKK 272

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D +A+DV I +      + PD+ +++++  +D E     N  V+   + P+ + +  +
Sbjct: 273 VVDNTAKDVEIEVQLAP-GISPDITIDALYAFTDCEISISPNACVIIDDK-PRFLTVSEL 330

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVE------------ILKGLLIAYLNIDEIIAIIR 408
           L+      + +L R    R+  +  +              I K L   + + + +IA I 
Sbjct: 331 LRSSADFTQALLKRELEIRLSELQDKWHYTSLEKIFFEKGIYKELEQKHKDWEAVIAAID 390

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
               P    + R  +T   +  +    +R + +L+  ++  ++ ++ A+ + +   L + 
Sbjct: 391 KGFAPYKKNLKR-EITREDILKLTEKPVRRIYRLDINELNEQIKSIEADIKDVKHDLAN- 448

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +        E   K    G+ R    E+   D   +QQ  I    I V     G
Sbjct: 449 ------MVDFTVAYYENLLK--KYGKGRERITEIKTFDTIQVQQVAIANAKIYVNR-VDG 499

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +I               K+ + +         D I++   DGK       +
Sbjct: 500 FI-----------GTSLKKDEFVAD---CSDLDNIIVFKKDGKMIITKVAD 536


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 49/365 (13%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR--GSW 266
           NPE+++++L++YI GPDFPT  I +  R  I+E+YR GRG   +RAR  VE++ +  G  
Sbjct: 1   NPELTVDELMQYIPGPDFPTAAI-INGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQ 59

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            IV+TE+PYQ+ K+RLIEKIAEL+  K++  + ++RDES +D   V+    R   P++++
Sbjct: 60  QIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVIL 119

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            +++  + +++ F +N+  L  G  P+++ L  +L+ ++ HRREV+ RR+ F ++    R
Sbjct: 120 NNLYAQTQLQSVFGINIVALIDG-RPRILNLKDLLEAFVRHRREVVTRRTVFELRKARER 178

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------------------ 416
             IL+G  +A  NID +IA+I+    P                                 
Sbjct: 179 GHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPEN 238

Query: 417 -------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                     ++ L+  Q  AIL LRL  L  LE  ++  E   +L +  ++  +LNS  
Sbjct: 239 LDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSAT 298

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +    I  E+  ++  +  +     RRT   E+  A        +I +E   V IS+ G+
Sbjct: 299 RLMEVIREELELIRSEYGDA-----RRT---EILDARLDLTLGDLITEEERVVTISHGGY 350

Query: 530 IRSLK 534
            ++  
Sbjct: 351 AKTQP 355


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 139/494 (28%), Positives = 246/494 (49%), Gaps = 34/494 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           + +  L++     V +   L + +L+YA   I  R + D RDG K V RRII +M E+  
Sbjct: 149 NQNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINK 208

Query: 67  DFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            +    +KK ARIVGEVIGK HPHGD+SVYD+L+RLAQ       LI+G GNFG+++ ++
Sbjct: 209 GYDKKSYKKCARIVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYNA 268

Query: 126 AAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           AA  RYTEAR++     +L    +++ +D+   ++  + EP V  SK P LL NG SGIA
Sbjct: 269 AA-MRYTEARISDFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIA 327

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           V + T+IPSHN+ ++  A++  + N +I+ ++L   I GPDF TGGII+  ++++ + Y 
Sbjct: 328 VSILTNIPSHNIVDVINASINFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIYN 387

Query: 245 LGRGGFRVRARWCVEEVGRGSWCI----------------------VVTEIPYQVQKSRL 282
            G+G   +R+    E        I                      ++  +P  V+ ++L
Sbjct: 388 TGKGNIVIRSNIFYEYAHNNKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNKL 447

Query: 283 IEKIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLSDME 336
           IE I  ++  ++     +L  IRDES ++   ++    +    + +      +   + ME
Sbjct: 448 IENIITVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSME 507

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
             +  N   +          L   L+ W  +R + + +    +   + + + I+   L  
Sbjct: 508 IDYHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLTI 567

Query: 397 YLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
              I +II+ +      + +     S F L E+Q+  IL+++++ L  ++         N
Sbjct: 568 QKKILDIISFLHKNQNIEQIQNYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIRKYN 627

Query: 454 LLAEKEKIDSLLNS 467
           LL +++    ++++
Sbjct: 628 LLNKRQSNQYIIDN 641


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 133/246 (54%), Positives = 183/246 (74%), Gaps = 1/246 (0%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           +++G+     +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           DGDSAAA RYTEARM+++A  IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAA 120

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + EI +  LA+ +N +I+I++L+E+I GPDFPT G I+  R  I +
Sbjct: 121 GIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRK 179

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+
Sbjct: 180 AYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 239

Query: 302 RDESAE 307
           RDES  
Sbjct: 240 RDESDR 245


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 128/229 (55%), Positives = 172/229 (75%), Gaps = 1/229 (0%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +VY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           +S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ +
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 216 KLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 181 ELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 228


>gi|75761793|ref|ZP_00741728.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490726|gb|EAO54007.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 362

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 25/314 (7%)

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
           +    ++ ++L   ++    I  E+ EVKE F+       +R T   +   +     + +
Sbjct: 1   MNLIAELKAILADEEKVLEIIREELTEVKERFND------KRRTEITIGGMEF-IEDEDL 53

Query: 515 IEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           I ++ I + +++ G+I+                +  +   + D ++  L   T D IL  
Sbjct: 54  IPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFF 113

Query: 567 STDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621
           +  GK Y      +   S    G  I  L+ ++  + I        +     L   + +G
Sbjct: 114 TNKGKVYRTKGYEIPEYSRTAKGLPIINLLGVDKGEWINAIIPIREFGDDQFLFFTTKQG 173

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV-GENRKLLIFSIDQIPE 680
            +     S        G   + +  E+++  V   +GD   +V   N  L+ F+   +  
Sbjct: 174 ISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRS 233

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGS 738
           M R   GV+  +   G    V+  +I E  T  +      Y +        L  RGG G 
Sbjct: 234 MGRNAAGVKAITL--GEEDQVVGMEIVEEDTNVLIVTKNGYGKRTPVEEYRLQSRGGKGL 291

Query: 739 LVPKGFPRSGKFLS 752
                  ++GK ++
Sbjct: 292 KTCNITDKNGKLVA 305



 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 12/207 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKI 553
            +      A +       +      + +G  +     S        L A+  +E D +  
Sbjct: 145 VDKGEWINAIIPIREFGDDQFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVIS 204

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                    I++ +++G        ++ S   +   ++  I L     +V   + +    
Sbjct: 205 VRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKA-ITLGEEDQVVGMEIVEEDTN 263

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLK---VSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +L+V+  G        E    +R GK            K+  V  VTG+  + ++     
Sbjct: 264 VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLITAAGV 323

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           ++   +DQI +M R  +GVRL   +D 
Sbjct: 324 IIRMPVDQISQMGRNTQGVRLIRLEDE 350


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 94/270 (34%), Positives = 166/270 (61%), Gaps = 5/270 (1%)

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           + +N +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G 
Sbjct: 2   VSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGK 60

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  ++
Sbjct: 61  ERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVI 120

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           + +++  + ++T F +NM  L  G  P+V+ L   L  +L H++ V+ RR+++ ++  + 
Sbjct: 121 LNNLYKQTALQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEA 179

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           R  IL+GL IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  L
Sbjct: 180 RAHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGL 239

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           E  +I+ E  +L+    ++  +L + ++  
Sbjct: 240 EREKIEEEYQSLIKLIAELKEILANEEKVL 269


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/266 (40%), Positives = 173/266 (65%), Gaps = 3/266 (1%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMA
Sbjct: 1   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G
Sbjct: 61  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +
Sbjct: 120 RIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDRE 178

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +
Sbjct: 179 GMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQ 237

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLL 394
           ++V+ RR+ F +     R  IL+GL+
Sbjct: 238 KDVITRRTQFELNKAKERAHILEGLI 263


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 154/653 (23%), Positives = 275/653 (42%), Gaps = 75/653 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I +RA+P   DG KPV RRI+H+M E   +    ++K A IVG 
Sbjct: 18  LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV L Q  +    LI  QGN+     GD AAA RY E R+T  A
Sbjct: 75  TMA-YHPHGDASIGDALVGLGQKNL----LIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   + +  ++  +Y+    EPV  P KFP LLA G  GIAVG++TSI  HN +E+C
Sbjct: 130 VDVVF--NPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA++A +   + +        + PDF TGGII  S       Y  G+ G +V+ R  +E+
Sbjct: 188 EASIACLRGKKFT--------LYPDFFTGGIIDVSD------YNDGQRGGKVKVRAKIEK 233

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      + + EIPY      LIE I +     +I  ++ + D +++ V I++       
Sbjct: 234 VDNK--TLAIREIPYGTTTVSLIESIVKANDKGKIK-IKHVDDNTSQGVEILVHL-QPGT 289

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           DP + +++++  +D E        V+     P+ + +  ILK    H  ++L    +  +
Sbjct: 290 DPQVAIDALYAFTDCEKSLSPCTCVIIDKH-PKFVGVSDILKLNTEHTVKLLEWELANEL 348

Query: 381 QAIDRRVEIL-----------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + ++ +  +              ++    + ++II ++R    P    + R ++T+ ++ 
Sbjct: 349 KHLEDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQTVTDEEIG 408

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            ++ + +R +   +  +    L  L     K          Q + I   +   K I  K 
Sbjct: 409 KLIEIPIRRISHYDREKADQLLQELEENIAKCKY------NQEHIIDYAVNHFKNILKKY 462

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
            +   RRT   E  + +             + V ++N+    + K   V       K+  
Sbjct: 463 GEGKERRTQIAEFGKVNA------------VHVALANQKLYVNRKEGFV---GTGMKKE- 506

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--IVTAFV 607
             +        D +++   DG   +     +      G+ I L+   N + +  I     
Sbjct: 507 --EYLFDVSEYDDLIVFKADG---SFKVVKVSDKDFVGKDIILVEKFNKDDERHIYNVIH 561

Query: 608 YD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSEEKMKLVVK 655
            D       +          ++   +   + G   L     ++ E ++  V+ 
Sbjct: 562 QDGKDGYAYIKRFNVGGVTRDKDYYMGKNKPGSKILYMSSNMNGEAEVVEVIL 614


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 150/592 (25%), Positives = 260/592 (43%), Gaps = 71/592 (11%)

Query: 3   VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            D      +  ++ VK   L    +  +L YA   I ERA+P + DG KPV RRI+HAM 
Sbjct: 19  SDTNYKPASPADKAVKY-QLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHAMK 77

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
            +       + K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI 
Sbjct: 78  RLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNIL 129

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  
Sbjct: 130 TGDDAAAPRYIEARLSKFALDVVF--NPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVE 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+++ I  HN  E+C+AA+A +           E+ + PDF TGG +  SR     
Sbjct: 188 GIAVGLSSKILPHNFNELCDAAIAYLHGE--------EFHLYPDFQTGGAVDVSR----- 234

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G  G  VR R  + ++      + ++EIPY    S LI+ I + +   +I + +  
Sbjct: 235 -YNDGERGGVVRVRAKISKIDNK--TLCISEIPYGKTTSSLIDSILKAVEKGKIKVRKV- 290

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D++  D   +L         D  +++++  +D E     N  V+   +    + +  +L
Sbjct: 291 -DDNTADKVEILVHLAPGASSDKTLDALYAFTDCEVNISPNCCVIEDKKPH-FLSVGTVL 348

Query: 362 KEWLAHRREVLFRRSSFR------------MQA--IDRRVEILKGLLIAYLNIDEIIAII 407
           ++ + H   +L R    +            ++   I+ R+   +G   A  N+D   A I
Sbjct: 349 RKSVDHTLGLLRRELEIQRDETLETLHFASLEKIFIEERIYKDRGFEQA-ENMDAACAHI 407

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                P    + R  +T++ +  ++ +++  + K  + +    +  L A+ E+ ++ L  
Sbjct: 408 DERLTPFYPQMVR-EVTKDDILRLMEIKMARILKFNKDKADENIARLKADIEETENHLAH 466

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                +      R +KE +         R T  E+   D     +     E + +     
Sbjct: 467 ---LTDYTIAWFRRLKEKYG----AQFPRRT--EIRNFDTIVATKVAEANEKLYINR-EE 516

Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           G+I               K+ + +    +    D +++   DGK   +   +
Sbjct: 517 GFI-----------GTGLKKDEFV---CNCSDIDDVIIFYRDGKYKVVRVQD 554


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 147/572 (25%), Positives = 252/572 (44%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  + N         E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASVKYLHNE--------EFKLYPDFQTGGNIDVSK------YNDGERGGAVRVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      +V+ EIPY    + + + I +     +I  ++ + D ++E+V I++      +
Sbjct: 256 VDNK--TLVIREIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSENVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDEQKPH-FLTVSDVLKKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 NEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE + 
Sbjct: 430 ILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K    G  R T  E+   D     + +   E + +     G+I               K+
Sbjct: 487 K----GFPRRT--ELRNFDTIDSTKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DG+    P  +
Sbjct: 529 DEFIT---NCSDLDDVIIFFRDGRYIITPVTD 557


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 159/261 (60%), Gaps = 5/261 (1%)

Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
           ++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+VTE+P
Sbjct: 2   QELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELP 60

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           YQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +++  + 
Sbjct: 61  YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 120

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ++T F +NM  L  G  P+V+ L   L  +L H++ V+ RR+++ ++  + R  IL+GL 
Sbjct: 121 LQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 179

Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           IA  ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E 
Sbjct: 180 IALDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEY 239

Query: 452 DNLLAEKEKIDSLLNSGKQQW 472
            +L+    ++  +L + ++  
Sbjct: 240 QSLIKLIAELKEILANEEKVL 260


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      V+    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 105/252 (41%), Positives = 162/252 (64%), Gaps = 3/252 (1%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           + VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP HN+ E+ +  +ALIDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   VRA+  +EE   G   I+
Sbjct: 61  PELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVVRAKAEIEEE-NGRHKII 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   ++    R  +P++ +  +
Sbjct: 119 VTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLL 178

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
           +  + M+  F + M  L   + PQ++ L  +L  ++  +++V+ RR+ F +     R  I
Sbjct: 179 YKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHI 237

Query: 390 LKGLLIAYLNID 401
           L+GL+IA  NID
Sbjct: 238 LEGLIIALDNID 249


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 158/706 (22%), Positives = 291/706 (41%), Gaps = 92/706 (13%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +N     L  A +  +L YA   I +RA+P + DG KPV RRI+H + E        F K
Sbjct: 73  KNNDNAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTLWEKD---DGRFHK 129

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTE 133
            A IVG  +   HPHGD S+  +LV +AQ    R  LI  QGNFGN + GD AAA RY E
Sbjct: 130 VANIVGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNALTGDDAAAPRYIE 184

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T  A  +L   +     ++ +Y+    EPV  P+KFP  L  G  GIAVG+AT I  
Sbjct: 185 ARLTPFAREVLF--NPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGADGIAVGLATKILP 242

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  ++C AA+  ++          ++ I PDF +GGI   S       Y  G  G +++
Sbjct: 243 HNFNDLCRAAINHLNGK--------KFRIVPDFASGGIADFSE------YNDGERGGKIK 288

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +E   R  + + +TE+PY      LIE I       +I  +  + D +A+ V I++
Sbjct: 289 IRAKIEI--RSKYLLAITELPYGATTVSLIESIVSANNKGKIK-IRHVDDNTADQVEILV 345

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS--------------MGRVPQVMPLDG 359
                S D + ++  +++ +D +        V+                   P    +  
Sbjct: 346 HLPQGS-DAEQVINQLYVFTDCQISISPAACVIEQVPARTGDDGREIPAQDRPIFTGVSE 404

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLN---IDEIIAIIR 408
           IL+  +    ++L +    ++  ++++          I + +     N    + ++  IR
Sbjct: 405 ILRRSVDKTVQLLKQELEIKLGELEQQWHWDSLERIFIEERIYRRIENSKTWENVLQEIR 464

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           +  KP  V   R  +TE+ +  +  +R++ +     ++    +  + A+ +++   L   
Sbjct: 465 DGLKPF-VKKLRREITEDDITRLTEIRIKRISAYNRFKADEAIKGIEADIKQVKHDLAH- 522

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 I   I   + +  K     +RRTT+ E+ +   A             V  + R 
Sbjct: 523 -----IIPYTIAWFERLQEKYGKGRKRRTTYDEIEQISAAQ-----------VVAANQRL 566

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           ++    +       L++++ + +         D +L +  DG   T+    +      G 
Sbjct: 567 YV----NRDEGFVGLNWRQHEFVT---ECTILDDVLCIMADG---TMKVAKVADKVFMGR 616

Query: 589 AI--QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS- 645
            I    ++  + ++   +    D               +  E        +G   + +  
Sbjct: 617 DIIHVAILPKDGDKKFYSLIYQDKESGKAFAKRFQIGGVTREKLYPLTASEGSKVVFLDV 676

Query: 646 SEEKMKLVVKVTGDHVAVVGE-NRKLLIFSID--QIPEMSR-GKGV 687
           ++++  +  +V    + + G  + ++  F  +  ++   SR  KG+
Sbjct: 677 ADDEASMPGRV---EIILSGRCSARVKEFPFNFGELKVGSRSAKGI 719


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 145/572 (25%), Positives = 261/572 (45%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G+ G  ++ R  VE+
Sbjct: 210 DAAVSCLRGE--------EFHLYPDFPTGGSIDVSK------YNDGQRGGVLKVRARVEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 256 LDSK--TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQLHL-TPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L R    R 
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKRELEIRK 370

Query: 381 QAIDRRV-------------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             ++ ++                +       ++DE++A + ++ +P      R  +T + 
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETARSLDEVVAFVDSKLEPYKKTFVR-EVTRDD 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L ++++ + K  + +    +  + AE  +ID  L    +           +KE + 
Sbjct: 430 ILRLLEIKMQRILKFNKDKADELIRKIKAEIAEIDKDLG---EMVRVTIEWFTHLKEKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+   D     + +   E + +     G+I               K+
Sbjct: 487 KD----HPRRT--EIKNFDTIVAAKVVDANEKLYIDR-QAGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + ++   +    D +++   DGK   +   +
Sbjct: 529 AEFVQ---NCSDLDDVIIFYRDGKYKVIRIAD 557


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 153/602 (25%), Positives = 260/602 (43%), Gaps = 79/602 (13%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           G +N          +   V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 15  GEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 74

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  +   HPHGD S+ D+LV++ Q  +    LI
Sbjct: 75  VQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQKDL----LI 126

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 127 DCQGNWGNILTGDRAAAPRYIEARLSKFALDVVF--NPKTTDWQLSYDGRNKEPITLPAK 184

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN+ EIC+AA+  +           E+ I PDFPTGG 
Sbjct: 185 FPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGE--------EFRIYPDFPTGGA 236

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  +E+V      + V EIPY    + LI+ I + + 
Sbjct: 237 IDVSK------YNDGQRGGALKVRAKIEKVDNK--TLAVREIPYSKTTATLIDSITKAVE 288

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I   +   + +AE    +L      +  D  M++++  SD E     N  V+   + 
Sbjct: 289 KGKIKARKIEDNTAAE--VEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNKP 346

Query: 352 PQVMPLDGILKEWLAH-----RREVLFRRSSFRMQA---------IDRRVEILKGLLIAY 397
              + +  +L+  +       R+E+  RR+    Q          I+ R+   +    A 
Sbjct: 347 G-FLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQLFFASLERIFIEERIYKERKFETA- 404

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
             +DE IA +  +  P      R  +T + +  ++ ++++ + K  + +    +  + AE
Sbjct: 405 KTMDEAIAFVDEKLTPFKPNFIR-EVTRDDILRLMEIKMQRILKFNKDKADELIAKIKAE 463

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +ID  L       +        +K  + K       R T        +AT        
Sbjct: 464 VAEIDKDLAH---MTDVTVNWFEFIKNKYGKE----HPRRTEIRNFDTIEATT------- 509

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V  + + +I   +           K+ + +    +    D I++   DGK   +  
Sbjct: 510 ---VVEANQKLYINRQEGFV----GTGLKKDEFV---CNCSDLDDIIIFYKDGKFKVVRV 559

Query: 578 GN 579
            +
Sbjct: 560 AD 561


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 146/572 (25%), Positives = 251/572 (43%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  + N         E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASVKYLHNE--------EFKLYPDFQTGGNIDVSK------YNDGERGGAVRVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      +V+ EIPY    + + + I +     +I  ++ + D ++ +V I++      +
Sbjct: 256 VDNK--TLVIREIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSGNVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDEQKPH-FLTVSDVLKKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 NEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE + 
Sbjct: 430 ILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K    G  R T  E+   D     + +   E + +     G+I               K+
Sbjct: 487 K----GFPRRT--ELRNFDTIDSTKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DG+    P  +
Sbjct: 529 DEFI---ANCSDLDDVIIFFRDGRYIITPVTD 557


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 151/595 (25%), Positives = 266/595 (44%), Gaps = 73/595 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 180

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 181 TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 236 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +           E+ + PDFPTGG I  S+      Y  G+ G  ++ R  VE+
Sbjct: 294 DAAVGCLRGE--------EFHLYPDFPTGGSIDVSK------YNDGQRGGVLKVRARVEK 339

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 340 LDSK--TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQLHL-TPGT 395

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR-----EVLFRR 375
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H +     E+  R+
Sbjct: 396 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKMELEIRK 454

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  ++DE++A + ++ +P      R  +T +
Sbjct: 455 HELEEQLFYNSLERIFIEDRIYKERKFETA-RSLDEVVAFVDSKLEPYKKTFVR-EVTRD 512

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L +R++ + K  + +    +  + AE  +ID  L    +           +KE +
Sbjct: 513 DILRLLEIRMQRILKFNKDKADELIQKIKAEIAEIDKDLG---EMVRVTIEWFTHLKEKY 569

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +     G+I               K
Sbjct: 570 GKD----HLRRT--EIKNFDTIVAAKVVDANEKLYIDR-QAGFI-----------GTGLK 611

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           + + ++   +    D +++   DGK        +      G+ +  +     N  
Sbjct: 612 KAEFVQ---NCSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVLHVQVFKKNDK 660


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 153/602 (25%), Positives = 260/602 (43%), Gaps = 79/602 (13%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
           G +N          +   V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 15  GEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 74

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  +   HPHGD S+ D+LV++ Q  +    LI
Sbjct: 75  VQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQKDL----LI 126

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 127 DCQGNWGNILTGDRAAAPRYIEARLSKFALDVVF--NPKTTDWQLSYDGRNKEPITLPAK 184

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN+ EIC+AA+  +           E+ I PDFPTGG 
Sbjct: 185 FPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGE--------EFRIYPDFPTGGA 236

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  +E+V      + V EIPY    + LI+ I + + 
Sbjct: 237 IDVSK------YNDGQRGGALKVRAKIEKVDNK--TLAVREIPYSKTTATLIDSITKAVE 288

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I   +   + +AE    +L      +  D  M++++  SD E     N  V+   + 
Sbjct: 289 KGKIKARKIEDNTAAE--VEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNKP 346

Query: 352 PQVMPLDGILKEWLAH-----RREVLFRRSSFRMQA---------IDRRVEILKGLLIAY 397
              + +  +L+  +       R+E+  RR+    Q          I+ R+   +    A 
Sbjct: 347 G-FLTVSDVLRHSVDRTMGLLRKELQIRRNELLEQLFFASLERIFIEERIYKERKFETA- 404

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
             +DE IA +  +  P      R  +T + +  ++ ++++ + K  + +    +  + AE
Sbjct: 405 KTMDEAIAFVDEKLTPFKPDFIR-EVTRDDILRLMEIKMQRILKFNKDKADELIAKIKAE 463

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +ID  L       +        +K  + K       R T        +AT        
Sbjct: 464 VAEIDKDLAH---MTDVTVNWFEFIKNKYGKE----HPRRTEIRNFDTIEATT------- 509

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
               V  + + +I   +           K+ + +    +    D I++   DGK   +  
Sbjct: 510 ---VVEANQKLYINRQEGFV----GTGLKKDEFV---CNCSDLDDIIIFYKDGKFKVVRV 559

Query: 578 GN 579
            +
Sbjct: 560 AD 561


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 253/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A +VG 
Sbjct: 50  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANVVGH 106

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 107 TMQ-FHPHGDASIGDALVQLGQKNL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 161

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN  EIC
Sbjct: 162 --LETVFNPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEIC 219

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA+A +           ++ + PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 220 NAAIAYLKGE--------DFHLYPDFPTGGSIDVSK------YNDGQRGGVLKVRAKIEK 265

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      + V EIP+    S LIE I + +   +I   +   + SA+    +L      +
Sbjct: 266 VDNK--TLAVREIPFSKNTSTLIESITKAVEKGKIKARKIEDNTSAQA--EILIHLAPGV 321

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  M++++  +D E     N  V+   + P  + +  +L+          R+E+L R+
Sbjct: 322 SSDKTMDALYAFTDCEINISPNCCVIEDQK-PCFLTVSDVLRHSADRTMGLLRQELLIRK 380

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  N DE++A I ++ +P      R  +T  
Sbjct: 381 HELEEQLFFNSLERIFIEERIYKERKFEQA-KNQDEVVAFIDSKLEPFKPSFIR-EVTRE 438

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + +    +  + AE  +I+  L +              ++  +
Sbjct: 439 DIVRLLEIKMQRILKYNKDKADELIAKIKAEIAEIEKDLAN---MVGVTINWFEYLRNKY 495

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +    G  R T        + T            V  + + +I   +           K
Sbjct: 496 GE----GHERLTEIRNFENIEVTK----------VVEANQKLYINRQEGFV----GTGLK 537

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   DGK   +   +
Sbjct: 538 KDEFV---CNCSDLDDIIIFYKDGKFKVIKVAD 567


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 159/571 (27%), Positives = 245/571 (42%), Gaps = 66/571 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L Y    I+ERAIPD+ DG KPV RRI+  ++ M       F K A +VGE
Sbjct: 12  LHQLFDTNFLDYTSYVIRERAIPDVDDGLKPVQRRILQTLANMD---DGRFHKVANVVGE 68

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
              KLHPHGDQS++D+LV LA        LI  QGNFGNI  GD A+A RY E R++ +A
Sbjct: 69  -TMKLHPHGDQSIFDALVNLANKG----YLIDRQGNFGNIFTGDQASAPRYIECRLSPLA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              L   ++D  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+ 
Sbjct: 124 RETLF--NKDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGAEGIAVGMATKIMPHNFGELL 181

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  +           E+++ PDFP GGII       V  Y  G G  R RA+     
Sbjct: 182 QAQIDYLRGQ--------EFVLYPDFPRGGIID------VADYNHGNGRIRCRAKLEQ-- 225

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               S  IV+TE+PY +    LIE I +   A ++  +  I D +AE V  V     R +
Sbjct: 226 --PDSKTIVITELPYNLTTQALIESIEKAAKANKLK-IASINDYTAEKVE-VEIKLARGV 281

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             +  +++++  +D E     ++  +     P+ M ++ +L+         L R     +
Sbjct: 282 LAEETIDALYAFTDCELSVSPSLVTIVDNM-PRQMAVEEVLRRNTDRLVANLERELQIEL 340

Query: 381 QAIDRRVE--------ILKGLLIAYL---NIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             ++ +          I + L        N  E+ A +R+   P    + R  +T   V+
Sbjct: 341 GRLEDKWHARKLEQIFIEERLYKQIEEKTNYKEVQATVRDSLLPFANELKR-KITPEDVE 399

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L +++R + + +  + + EL ++  +  +I   L             + E+   +   
Sbjct: 400 RLLEIKIRRISRYDINRQQKELRDIEKQIGQIKKHLTD---MIGFTVAYLGELAAKYGSQ 456

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                    F EV     A           +TV     G+ R              K  D
Sbjct: 457 FPRASELRAFDEVDARAAALS--------NLTV-----GYHR-----ESGFLGHKIKAED 498

Query: 550 SLKIA-LHAHTTDRILLLSTDGKAYTLPAGN 579
                       DR+LL+  DG    +   +
Sbjct: 499 EAHDLDCACSEYDRLLLIFKDGLYKVIHVPD 529


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 4   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 63

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 64  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 122

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 123 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 182

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 183 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 242

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 243 LEIIREELTEIKERFNDE-----RRTEIV 266


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELMEIKERFNDE-----RRTEIV 269


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 145/572 (25%), Positives = 250/572 (43%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +           E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASVKYLHKE--------EFKLYPDFQTGGNIDVSK------YNDGERGGAVRVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      +V+ EIPY    + + + I +     +I  ++ + D ++  V I++      +
Sbjct: 256 VDNK--TLVIREIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+ + +   +L R    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDEQKPH-FLTVSDVLKKSVDNTLALLRRELEIRR 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +++  
Sbjct: 371 NEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVSKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE + 
Sbjct: 430 ILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K+     RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 487 KAFP---RRT---ELRNFDTIDSTKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DG+    P  +
Sbjct: 529 DEFI---ANCSDLDDVIIFFRDGRYIITPVAD 557


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/266 (40%), Positives = 172/266 (64%), Gaps = 3/266 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 4   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 63

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 64  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 122

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 123 RAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 181

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  +++V+
Sbjct: 182 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQKDVI 240

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYL 398
            RR+ F +     R  IL+GL+IA  
Sbjct: 241 TRRTQFELNKAKERAHILEGLIIALD 266


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 170/401 (42%), Gaps = 27/401 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           R+ V+  R  F +    +R  I+ GL+ A   +D++IA IR        K  +VS ++ T
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFT 60

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AI+ L+L  L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+
Sbjct: 61  EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKK 120

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--- 541
            +      G  R T  E    +       ++ +E + V +++ G+I+     S   S   
Sbjct: 121 QY------GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPE 174

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNH 598
            +  KEGD L  A   +T D +LL++  G     P   L   R    GE I Q +++L  
Sbjct: 175 EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAI 234

Query: 599 NQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGK--TFLKVSSE-EKMK 651
           ++ I+  + Y     T   + ++  G     + ++     T K +  + +K+ S+ +++ 
Sbjct: 235 DESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPWRTYKSRPTSCMKLKSDQDEIT 294

Query: 652 LVVKVTGD---HVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICE 707
            V          V +V      L + + ++P +  +  GV+  + K+            E
Sbjct: 295 NVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVNGLLVHSE 354

Query: 708 GLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
           G T  +    R   +           R   G +V +   ++
Sbjct: 355 GDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 395



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 535 SHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           S +  + +++ KE D +   + +H+     I++++  G    + A  L         + +
Sbjct: 329 SKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 388

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKM 650
           L +L  N   V      +   LLV + KG       +   I   T  G   +    E+K 
Sbjct: 389 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKD 445

Query: 651 KLVVKVTGDHVAVV 664
             V++V   H AV+
Sbjct: 446 GQVMEVHEMHSAVI 459


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 150/566 (26%), Positives = 259/566 (45%), Gaps = 70/566 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A I G 
Sbjct: 105 LSGMYKNWFLDYASYVILERAVPHIDDGLKPVQRRILHSMKRMD---DGRYNKVANIAGH 161

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY E+R+++ A
Sbjct: 162 TMQ-FHPHGDASICDALVQMGQKDL----LIDTQGNWGNIFTGDRAAAPRYIESRLSKFA 216

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EPV  P+KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 217 --LETVFNPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEIC 274

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +            + + PDFPTGG         VE Y  G+ G  ++ R  VE+
Sbjct: 275 DAAINYLKEK--------PFALYPDFPTGG------SIDVEKYNDGQRGGTLKVRAKVEK 320

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 321 IDNK--TLVIREVPFTKTASSLAESITKAVEKGKLK-IRKVEDMTASEVEIQLHL-TPGT 376

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  M++++  +D E     N  V+S  + PQ + +  +L+  + H     RRE+  R+
Sbjct: 377 SSDKTMDALYAFTDCEVSISPNCCVISDNK-PQFLTISDVLRHSVNHTQGLLRRELEIRK 435

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +    Q          I+ R+   +G   A   +D+ I  +  + +P      R    E+
Sbjct: 436 AELEEQLFFSSLERIFIEERIYKERGFETA-KTMDDAIKFVDGKLEPFKKNFIREVKRED 494

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    L N+ AE  +I+  L+   +         + +K  +
Sbjct: 495 -ILRLMEIKMQRILKFNKDKADELLKNIQAEIAEINKDLS---EMVRVTIEWFKHLKTKY 550

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +     G+I               K
Sbjct: 551 GKDY----PRKT--EIKSFDTIVAAKVVDANEKLYIDR-KGGFI-----------GTDLK 592

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKA 572
           + + ++   +    D +++   DGK 
Sbjct: 593 KAEFVQ---NCSNLDDVIVFYRDGKY 615


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 152/595 (25%), Positives = 266/595 (44%), Gaps = 73/595 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  + N         ++ + PDFPTGG I  ++      Y  G+ G  ++ R  +E+
Sbjct: 210 EAAVQYLRNE--------DFHLYPDFPTGGSIDAAK------YNDGQRGGVLKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    + L E I + +   +I  +  + D +A +V I L       
Sbjct: 256 LDNK--TLVIREVPFTKTANSLQESITKAVEKGKIK-VRKVEDMTASEVEIQLHL-TPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR-----EVLFRR 375
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H +     E+  R+
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PKFLTISDVLRNSVEHTKALLKMELEIRK 370

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  N+DE++A +  +  P      R  +T  
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKERKFETA-RNLDEVVAFVDAKLDPYKKTFIR-EVTRE 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + +    +  + AE  +ID  L+   +           +KE +
Sbjct: 429 DILRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS---EMVRVTIEWFTHLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +  S  G+I               K
Sbjct: 486 GKD----HPRHT--EIKSFDTIVAAKVVDANEKLYI-DSKAGFI-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           + + ++   +    D +++   DGK        +      G+ +  L     N  
Sbjct: 528 KAEFVQ---NCSDLDDVIIFYRDGKY---KVIRIAEKVFVGKGVIYLQVFKKNDK 576


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 6   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 65

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 66  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 124

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 125 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 184

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 185 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 244

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 245 LEIIREELTEIKERFNDE-----RRTEIV 268


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 145/572 (25%), Positives = 249/572 (43%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +           E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASVKYLHKE--------EFKLYPDFQTGGNIDVSK------YNDGERGGAVRVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      +V+ EIPY    + + + I +     +I  ++ + D ++  V I++      +
Sbjct: 256 VDNK--TLVIREIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDEQKPH-FLTVSAVLKKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 NEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE + 
Sbjct: 430 ILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K    G  R T  E+   D     + +   E + +     G+I               K+
Sbjct: 487 K----GFPRRT--ELRNFDTIDSTKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DG+    P  +
Sbjct: 529 DEFI---ANCSDLDDVIIFFRDGRYIITPVAD 557


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 147/594 (24%), Positives = 263/594 (44%), Gaps = 71/594 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 180

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 181 TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 236 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +           E+ + PDFPTGG I  S+      Y  G+ G  ++ R  VE+
Sbjct: 294 DAAVGCLRGE--------EFHLYPDFPTGGSIDVSK------YNDGQRGGVLKVRARVEK 339

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S L E I + +   ++  +  + D +A +V I L       
Sbjct: 340 LDSK--TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASEVEIQLHL-TPGT 395

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + P+ + +  +L+  + H + +L      R 
Sbjct: 396 SSDKTIDALYAFTDCEINISPNCCVIEDNK-PRFLTVSDVLRNSVEHTKALLKMELEIRK 454

Query: 381 QAIDRRV-------------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             ++ ++                +       ++DE++A + ++ +P      R  +T + 
Sbjct: 455 HELEEQLFYNSLERIFIEDRIYKERKFETARSLDEVVAFVDSKLEPYKKTFVR-EVTRDD 513

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L +R++ + K  + +    +  + AE  +ID  L    +           +KE + 
Sbjct: 514 ILRLLEIRMQRILKFNKDKADELIRKIKAEIAEIDKDLG---EMVRVTIEWFTHLKEKYG 570

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+   D     + +   E + +     G+I               K+
Sbjct: 571 KD----HLRRT--EIKNFDTIVAAKVVDANEKLYIDR-QAGFI-----------GTGLKK 612

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            + ++   +    D +++   DGK        +      G+ +  +     N  
Sbjct: 613 AEFVQ---NCSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVLHVQVFKKNDK 660


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 5   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 64

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 65  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 123

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 124 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 183

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 184 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 243

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 244 LEIIREELTEIKERFNDE-----RRTEIV 267


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 179/326 (54%), Gaps = 11/326 (3%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +  + LID+P  S+EKL+EYI GPDFPTGGI ++ +  I ++Y  GRG   +RA+  +E
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGI-LQGKAEIKKAYETGRGKVILRAKTKIE 59

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +  G   IV++EIPY+V K+ L++K+ E+ + K++  + ++RDES      ++    + 
Sbjct: 60  PLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKD 119

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           ++ + ++  +F  ++++  +  NM  +      QV  L  IL+ ++ HR+ V+  R  F 
Sbjct: 120 VNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQV-GLKRILESYITHRKSVIINRCQFE 178

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436
           +    +R  I+ GL+ A   +D++IA IR   ++   K  +VS ++ TE Q +AI+ L+L
Sbjct: 179 LDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAIVTLQL 238

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L   +   ++ E   L  +  ++ ++LN+ K+ ++ +  E+REVK+ +      G  R
Sbjct: 239 YRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY------GNPR 292

Query: 497 TTFCEVSRADKATLQQAMIEKEPITV 522
            T  E    +       ++ +E + V
Sbjct: 293 LTQIEEEIQEIKIETAVLVAQEDVVV 318


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 144/572 (25%), Positives = 253/572 (44%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P L DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 31  LSGMYQNWFLDYASYVILERAVPHLGDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 87

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  G SAAA RY EAR+++ A
Sbjct: 88  TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGSSAAAPRYIEARLSKFA 142

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  EIC
Sbjct: 143 LDTVF--NPKTTEWKMSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFCEIC 200

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +            + + PDFPT G I  S+      Y  G+ G  ++ R  +E+
Sbjct: 201 DAAISYLHQQ--------PFALYPDFPTSGSIDVSK------YNDGQRGGVIKVRAKIEK 246

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           + +    +V+ EIP+      L + I + I   +I   + + D +A +V I +      +
Sbjct: 247 IDQK--TLVIREIPFSKTSETLQDSIVKAIEKGKIKARK-VEDLTAAEVEIQVHLAP-GV 302

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   + PQ + +  +L+  +   ++++ +    R 
Sbjct: 303 SSDKTIDALYAFTDCEVSISPNCCVIEDNK-PQFLTVSDVLRHSVERTKDLIRQELEIRK 361

Query: 381 QAIDRRVEIL-------------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +  ++                        N+D +   I     P      R  +T++ 
Sbjct: 362 GELLEQLHFQSLERIFIEERIYKDKKFEQAPNVDAVCEHIDERLTPYYPQFIR-EVTKDD 420

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L ++++ + K  + +    +  L AE E+ID  L +        A   + +K+ + 
Sbjct: 421 ILKLLEIKMQRILKFNKDKADELMARLKAEIEEIDRDLAN---LVEVTANWFQFLKDKYG 477

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+   D     +     + + +  S  G+I               K+
Sbjct: 478 KD----HPRLT--EIRNFDTIDSAKVAEANQKLYINRS-DGFI-----------GTGLKK 519

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +    
Sbjct: 520 DEFV---CNCSDLDDVIIFYKDGKYKIVRVAE 548


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/269 (32%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 262/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G+ G  ++ R  VE+
Sbjct: 210 DAAISYLRGE--------EFNLYPDFPTGGSIDVSK------YNDGQRGGVLKVRAKVEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    + L E I + +   ++  +  + D +A +V I L       
Sbjct: 256 LDNK--TLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASEVEIQLHL-TPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR-----EVLFRR 375
             D  +++++  +D E     N  V+   + P+ + +  +L+    H +     E+  R+
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIRDNK-PEFLTISDVLRNSAEHTKALLKLELEIRK 370

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  +IDE++A + ++ +P      R  +T +
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETA-KDIDEVVAFVDSKLEPYKKTFIR-EVTRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + +    +  + AE  +ID  LN   +           +KE +
Sbjct: 429 DIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLN---EMVRVTIEWFTHLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E+   D     + +   E + +     G+I               K
Sbjct: 486 G----GDHPRRT--EIKSFDTIVAAKVVDANEKLYIDR-QEGFI-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + ++   +    D +++   DGK   +   +
Sbjct: 528 KAEFVQ---NCSDLDDVIIFYRDGKYKVIRIAD 557


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 4   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 63

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 64  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVDGQ-PKV 122

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 123 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 182

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 183 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKV 242

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 243 LEIIREELTEIKERFNDE-----RRTEIV 266


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 184/433 (42%), Gaps = 26/433 (6%)

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            +  NM  ++    P++M +  +L  ++ H++E++ +RS + ++    R  IL+GL+ A 
Sbjct: 1   SYNFNMVAINKK-RPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKAL 59

Query: 398 LNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
             +DE+I +IR        K  + +++  +E Q +AI++L+L  L   + ++++SE  +L
Sbjct: 60  SILDEVIKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSL 119

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             +   ++ +L    +    +  E+ E+K+ +  +      R T  +    +     + +
Sbjct: 120 AEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA------RRTEVQAEITEIKIDTEVL 173

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           +  E + V ++  G+++     S   S    L  KE D        ++ D +LL ++ G 
Sbjct: 174 VANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAVFIQKMNSLDSLLLFTSKGN 233

Query: 572 AYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFI 625
               P   L   R    G+ +  L  DL+  ++I +A     +    + L V+  G    
Sbjct: 234 FIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQ 293

Query: 626 VEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS- 682
              +        K    +K+  ++++  V  + G + + +  +N   L +SI +IPE   
Sbjct: 294 SAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGA 353

Query: 683 RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
           R  GV+  + K D  +   I     E    + +  R   +           R   G L+ 
Sbjct: 354 RTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLML 413

Query: 742 KGFPRSG--KFLS 752
           +   +S   +F+ 
Sbjct: 414 REL-KSNPHRFIG 425


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 256/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+PD+ DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 49  LSGMYQNWFLDYASYVILERAVPDIYDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 105

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 106 TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 160

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I  HN  E+ 
Sbjct: 161 --LETVFNPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKILPHNFNELL 218

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +A +           ++I+ PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 219 DACVANLKGE--------DFILYPDFQTGGSIDVSR------YNDGERGGAVKIRAKIGK 264

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + +TEIP+    S+LIE I +     +I  +  + D ++ +V I++     S 
Sbjct: 265 IDNK--TLAITEIPFGTNTSKLIESIIKASDKGKIK-IRKVDDNTSANVEILVHLLPGS- 320

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   + P+   +  +L+    H     + E+  +R
Sbjct: 321 SSDKTIDALYAFTDCELSISPNCCVIHDNK-PRFCGVSEMLRISCQHTMDLLQAELEIQR 379

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +  +       ++   I+ R+   KG   +    DE+I  I    +P      R  + E+
Sbjct: 380 AELQEQLFFTSLEKIFIENRIYKDKGFEDSTSQ-DEVIVHIDKRLEPFKKDFIREIVRED 438

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L +++  + K +  +    L ++    ++I+  L       +        +K  +
Sbjct: 439 FIK-LLEIKMMRITKFDSDKANETLISIQKRIDEINHHLAH---LVDYTISWYEGLKAKY 494

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   +     + +   E + V   + G+I               +
Sbjct: 495 GKD----HPRLT--EIRNFETIVASKVVEANEKLYVNY-DEGFI-----------GTSLR 536

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   DGK   +   +
Sbjct: 537 KDEFV---CNCSDIDDIIIFFKDGKYKIVKVAD 566


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 151/573 (26%), Positives = 262/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q    +Y LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 --LETVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA++ +   + S        I PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 210 SAAISYLKGKDFS--------IYPDFPTGGSIDVSK------YNDGQRGGALKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S L E I + I   +I  +  + D +A +V I L       
Sbjct: 256 LDNK--TLVIREVPFTKTASSLQESITKAIEKGKIK-VRKVEDMTASEVEIQLHL-TPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +LK  + H     + E+  R+
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIEDNKPG-FLTVSDVLKYSVNHTKDLLQLELEIRK 370

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  +IDE++  + ++ +P      R  +T +
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKERKFETA-KDIDEVVLFVDSKLEPFKNTFIR-EVTRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + +    +  + AE  +ID  L+   +         + +KE +
Sbjct: 429 DIIRLLEIKMQRILKFNKDKADELIAKIKAEIAEIDKDLS---EMVRVTIEWFKHLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +     G+I               K
Sbjct: 486 GKD----HPRLT--EIKSFDTIIAAKVVDANEKLYIDR-QGGFI-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + ++   +    D I++   DGK   +   +
Sbjct: 528 KAEFVQ---NCSDLDDIIIFYRDGKYKIIRIAD 557


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 156/269 (57%), Gaps = 9/269 (3%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+
Sbjct: 7   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 66

Query: 295 IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           I  + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V
Sbjct: 67  IEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVDGQ-PKV 125

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-- 412
           + L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN     
Sbjct: 126 LNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 185

Query: 413 -PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  + 
Sbjct: 186 IARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKV 245

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFC 500
              I  E+ E+KE F+       RRT   
Sbjct: 246 LEIIREELTEIKERFNDE-----RRTEIV 269


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 262/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ +IC
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G+ G  ++ R  VE+
Sbjct: 210 DAAISYLRGE--------EFNLYPDFPTGGSIDVSK------YNDGQRGGVLKVRAKVEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    + L E I + +   ++  +  + D +A +V I L       
Sbjct: 256 LDNK--TLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASEVEIQLHL-TPGT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR-----EVLFRR 375
             D  +++++  +D E     N  V+   + P+ + +  +L+    H +     E+  R+
Sbjct: 312 SSDKTIDALYAFTDCEINISPNCCVIRDNK-PEFLTVSDVLRNSAEHTKALLKLELEIRK 370

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   +    A  +IDE+++ + ++ +P      R  +T +
Sbjct: 371 HELEEQLFYNSLERIFIEDRIYKERKFETA-KDIDEVVSFVDSKLEPYKKTFIR-EVTRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + +    +  + AE  +ID  L+   +           +KE +
Sbjct: 429 DIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS---EMVRVTIEWFTHLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E+   D     + +   E + +     G+I               K
Sbjct: 486 GSD----HPRRT--EIKSFDTIVAAKVVDANEKLYIDR-QEGFI-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + ++   +    D +++   DGK   +   +
Sbjct: 528 KAEFVQ---NCSDLDDVIIFYRDGKYKVIRIAD 557


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 168/746 (22%), Positives = 309/746 (41%), Gaps = 101/746 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVI 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+ D++V++ Q  +    LI  QGN+G  I GD+AAA RY EAR+++
Sbjct: 75  GN-TMKYHPHGDASIGDAMVQIGQKDL----LIDCQGNWGDPITGDNAAAPRYIEARLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  ++   + D   ++ +Y+  ++EPV  P KFP LLA G  GIAVG+AT +  HN  E
Sbjct: 130 FANEVVF--NGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIG--PDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           + +A          SIE L  +     PDF TGG+   S      +Y  G  G R+R R 
Sbjct: 188 LLDA----------SIEALQGHRPNILPDFFTGGMADFS------AYNEGMRGGRIRVRA 231

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            + E  +    +V+TEIPY      +I+ I      K    ++ I D +A  V IV+   
Sbjct: 232 KITE--KDKKTLVITEIPYSTTTGSVIDSILSA-NDKGKIKIKKIEDNTAAHVEIVIQLA 288

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
              + PD+ +++++  +  E     N   +     PQ + ++ IL E   H + +L +  
Sbjct: 289 P-GISPDVTIDALYAFTSCEVSISPN-TCIIKDEKPQFLSVNDILIENSMHTKALLKKEL 346

Query: 377 SFRMQAIDR--------RVEILKGLLIAYL-----NIDEIIAIIRNEDKPKPVMVSRFSL 423
             ++  +          ++ I +G+          N + ++ ++    +P    + R  L
Sbjct: 347 EIKLHELQEKIFFSSLLKIFIQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPGLYREIL 406

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E+    +++  + S+ + +  +   ++  L  E + + + L   +          +++K
Sbjct: 407 PED-FKKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHL---RHLTEYAIAWFQKLK 462

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           + + K    GR R T  E+   D+    +  +              ++   +        
Sbjct: 463 DKYGK----GRERKT--EIRLFDRVEASKVALAN------------VKLYMNREDGFIGT 504

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDI 602
             ++ + +         D +++   DGK       +       G+ I    +    ++  
Sbjct: 505 GLRKDEFVAD---CSDIDELIVFREDGKCIITKVAD---KTFVGKGILHAQVFKKGDERT 558

Query: 603 VTAFVYDSTCKLLVVSSK---GNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLVVKV 656
           +   +Y      +    +         +E ++   ++  K        + E ++  V   
Sbjct: 559 IYNMIYKDGASGVSYIKRFAVVGVTRDKEYDLTKGSKGSKVLYFTANPNGEAEIVTVQLK 618

Query: 657 TGDHVAVVGENRKLLIFSID--QIPEMSRG-KG-------VRLQSYKDGGISDVICFKI- 705
               +       K L F +D  +I    RG +G       V+    K  G+S +   KI 
Sbjct: 619 PHSKL-------KKLQFDLDFAEIAIKGRGSQGNIVSKYPVKKILLKSKGVSTLSGLKIW 671

Query: 706 -CEGLTWIDSAGRSYNRSENDLLGWL 730
             + L  ++  GR     E D    +
Sbjct: 672 YDDLLRRLNVDGRGKYLGEFDGEDKI 697


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 112/258 (43%), Positives = 161/258 (62%), Gaps = 6/258 (2%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+IP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 196 VQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           ++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S +   ++Y+ GRG  R
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADAYKTGRGSIR 179

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVR 310
           +R    VEE  RG   +V+TE+PYQV     I  IAE +   ++  + +I D+ S     
Sbjct: 180 MRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGL 239

Query: 311 IVLFPKNRSLDPDLLMES 328
            ++    R     +++ +
Sbjct: 240 RIVIEIKRDAVAKVVINN 257


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 117/248 (47%), Positives = 172/248 (69%), Gaps = 1/248 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT I
Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG  R
Sbjct: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240

Query: 252 VRARWCVE 259
           +RA W  E
Sbjct: 241 MRAVWKKE 248


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 256/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 52  LSGMYQNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 108

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 109 TMQ-FHPHGDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 163

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+C
Sbjct: 164 LDTVF--NPKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELC 221

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  +            + + PDFPTGG I  SR      Y  G+ G  ++ R  +E+
Sbjct: 222 EAAIHYLKGE--------PFRLYPDFPTGGSIDASR------YNDGQRGGSIKVRAKIEK 267

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + +   +I   + + D +A +V I +      +
Sbjct: 268 LDSK--TLVIREIPFSKNTTTLIDSILKAVDKGKIKA-KRVDDNTAAEVEIQVHLAP-GV 323

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   + P+ + +  +L+  +       R E+  R+
Sbjct: 324 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVLRHNVDSTMGLLRLELQIRK 382

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  N+D  +  I N  +P      R  L  +
Sbjct: 383 DELLEQLFFSSLEKIFIEERIYKDKKFENA-ENMDAAVEHIDNRLEPFKPDFIR-ELRRD 440

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    L  +  E   ID  L       +      + + E +
Sbjct: 441 DIMRLMEIKMQRILKFSKDKADELLARIKEEIAGIDHDLAH---MTDVTIKWFKFLIEKY 497

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   +     + +   E + +     G+I               K
Sbjct: 498 GKD----HPRLT--EIKSFETIEATKVVEANEKLYINR-REGFI-----------GTGLK 539

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D IL+   DGK   +   +
Sbjct: 540 KDEFV---CNCSDIDDILVFHRDGKYKVMRVAD 569


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 155/267 (58%), Gaps = 9/267 (3%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 60

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ 
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLT 119

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       
Sbjct: 120 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIA 179

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +   
Sbjct: 180 RTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLE 239

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFC 500
            I  E+ E+KE F+       RRT   
Sbjct: 240 IIREELTEIKERFNDE-----RRTEIV 261


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 157/592 (26%), Positives = 254/592 (42%), Gaps = 72/592 (12%)

Query: 8   NSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           + N++  E  +  +   R  ++  +L YA   IK+RAIPD+ DG KPV RR++ A+ ++ 
Sbjct: 32  DPNSVAAERYRGNNDYFRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV- 90

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
             +     K A +VG  +   HPHG+ S+ D+LV LA     +   I+ QGNFGNI  G 
Sbjct: 91  --YDGRTHKVANVVGNTMH-YHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGS 143

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RY E  ++ +   +L   + D  +F DTY+    EPV  P+K P+LL  G+ GIA
Sbjct: 144 PAAAGRYIECSLSPLGHEVLF--NNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIA 201

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT I  HN  E+ EA +A++           E+ + PDF  GG++       V  Y 
Sbjct: 202 VGMATKIMPHNFNELLEAEIAVLRGE--------EFELYPDFQQGGLMD------VREYN 247

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G G   +RA+  +E VGR    +++ EIP       L+  I +     +I  +  + D 
Sbjct: 248 DGNGKITLRAK--IEIVGRD---LIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDY 301

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           + + V I + P  R  DP+  M+ ++M +D      +NM V+     P  M +  +L+  
Sbjct: 302 TTDKVEIKVVP-TRGYDPEKTMQGLYMYTDCSVSISVNMTVI-RENRPVQMSVSEVLRRN 359

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----IDEIIAIIRNEDKPKP---- 415
                E L R     +   +          I + N     I+E  +      +       
Sbjct: 360 ADKLLEYLKRELEIDLAKQEDLFHAKTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAP 419

Query: 416 -VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R  +T+  +D +L L +R + + +  + + EL  +LA+ E+I   L S       
Sbjct: 420 FRHLLRRDVTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGS---LKKY 476

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               +R++ + + K       R T  E         ++               G++    
Sbjct: 477 AINYLRKLLDKYGKD----FPRRTEIEHFEK---IDRREAALNNIKVGWDRKNGYV---- 525

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGR 584
                      K  D     L  +  DR L +   G  K   LP   L  G+
Sbjct: 526 -------GTSIKSDD----ILACNEFDRFLCVEKSGSYKVIALPPEKLFIGK 566


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 48/354 (13%)

Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQV 277
           E+I          I+  R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV
Sbjct: 1   EHIPV-RTSRPPPIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQV 59

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++ +++  + ++ 
Sbjct: 60  NKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 119

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R  IL+ L IA 
Sbjct: 120 SFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIAL 178

Query: 398 LNIDEIIAIIRNEDKPKPV-------------------------------------MVSR 420
            NID II +IR    P                                           +
Sbjct: 179 ANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQ 238

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 239 YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEME 298

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            +++ F        RRT   E++        + +I +E + V +S++G+++   
Sbjct: 299 LIRDQFGDE-----RRT---EITANSADINIEDLISQENVVVTLSHQGYVKYQP 344


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 119/225 (52%), Positives = 168/225 (74%), Gaps = 1/225 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES 
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 225


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/268 (32%), Positives = 156/268 (58%), Gaps = 9/268 (3%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           R  I ++Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I
Sbjct: 1   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 60

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+
Sbjct: 61  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVL 119

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--- 412
            L   L+ +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN      
Sbjct: 120 NLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEI 179

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +  
Sbjct: 180 ARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVL 239

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFC 500
             I  E+ E+KE F+       RRT   
Sbjct: 240 EIIREELTEIKERFNDE-----RRTEIV 262


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 139/390 (35%), Gaps = 65/390 (16%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + L+E Q DAIL + LR+L  L++ +I     NL+ +      +L+  ++    I  E+ 
Sbjct: 60  YYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELE 119

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
           E+K  +        RR+   E++        + +I +  + V +++ G+I++        
Sbjct: 120 EIKTNYGDE-----RRS---EINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQA 171

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590
            +       A   K+ D ++    A+T D ++  +  GK + +    L  G     G  I
Sbjct: 172 QRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPI 231

Query: 591 QLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
             +I L   +    I+    +     +   +++G    V+ S       +G   + +   
Sbjct: 232 NNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEG 291

Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFS----------------IDQIP----------- 679
           + +    +  G D + +     K + F+                  +I            
Sbjct: 292 DYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSE 351

Query: 680 -EMSRGK-GVR----------LQSYK-DGGISDVICF---KICEGLTWIDSAGRSYNRSE 723
             +  GK GVR                DG I  +I F       GL  + +    Y +  
Sbjct: 352 NALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRT 411

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    +GG G++      R+G  +++
Sbjct: 412 PIADYSRKNKGGQGNIAINTGERNGDLVAA 441



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 97/284 (34%), Gaps = 54/284 (19%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E      A L      ++      + +G ++ ++  +        + A+  KEGD L
Sbjct: 235 IQLEEGEKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYL 294

Query: 552 KIALHAHTTDRILLLSTDGKA-----YTLPAGN--------------------------L 580
             A      D I+L S  GKA     Y   +GN                          L
Sbjct: 295 VGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENAL 354

Query: 581 LSGRGHGEAIQLL------IDLNHNQDIVTAFVYDSTC-----KLLVVSSKGNAFIVEES 629
            SG+               + L  +  IV+   +         ++L  ++ G       +
Sbjct: 355 PSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIA 414

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-G 684
           +     + G+  + +++ E+   +V  T     D + ++     L+   ++QI E  R  
Sbjct: 415 DYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAA 474

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728
            GV+L +  D G + V   ++ E  + +  A    N +E ++  
Sbjct: 475 AGVKLINL-DEGETLVSLERVAEDESELSDASVISNVTEPEVEN 517


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 148/575 (25%), Positives = 253/575 (44%), Gaps = 68/575 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E++K +S  +  +E +L YA   I ERAIP + DG KPV RRI+H+M E+       + K
Sbjct: 7   ESIKKISGMY--QEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMRELE---DGRYNK 61

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A IVG    K HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY E
Sbjct: 62  VANIVGN-TMKYHPHGDASITDAIVQIGQKDL----LIDTQGNWGNILTGDRAAAARYIE 116

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T+ A  ++   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG++T I  
Sbjct: 117 ARLTKFALEVV--YNPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTKILP 174

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A++A +   + +        + PDF TGG I       V  Y  G  G +VR
Sbjct: 175 HNFIELIDASIAYLRGKKFT--------LYPDFQTGGYIE------VADYNDGMRGGKVR 220

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + +V      + ++EIP+      LI+ I +     +I  +  I D +A DV I++
Sbjct: 221 IRAKISQVD--KTTLKISEIPFSTTTGSLIDSILKANDKGKIK-IRKIEDNTAADVEILI 277

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                   PD  +++++  +D E     N  V+   + P+ + +  ILK    +  ++L 
Sbjct: 278 HL-QTGTSPDKTIDALYAFTDCEVSLSPNACVI-DEQKPEFLSVSEILKRNTDNTVQLLK 335

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVMVSRFS 422
           R     +  +  +        I   N            + +I  I    KP    + R +
Sbjct: 336 RELEISLDELQEQWHFSSLERIFIENRIYHQIEEEETWEGVIETIDKGLKPFTSHLLR-A 394

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +TE  +  +  +R++ + + +  +    + +L  +  ++   L +     +      +E+
Sbjct: 395 VTEEDIVKLTEIRIKRISRFDLDKADQHILSLEDKIAEVKHHLAN---LIDYSIAYFKEL 451

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K  +      G+ R T  E+   D     +  +      V  +  G+I            
Sbjct: 452 KTKYG----AGKERKT--EIRTFDIIDASKVAVANTRFYVDRTE-GFI-----------G 493

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
              ++    +        D I++   DG       
Sbjct: 494 TSLRKD---EFLFECSDIDDIIIFRRDGVMMVTKV 525


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/224 (53%), Positives = 168/224 (75%), Gaps = 1/224 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
             G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 154/573 (26%), Positives = 258/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +LAYA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQGWFLAYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR++Q A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQKNL----LIDMQGNWGNILTGDRAAAPRYIEARLSQFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN  EIC
Sbjct: 152 LDVVF--NPKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G  G  ++ R  +E+
Sbjct: 210 QAAISYLRGE--------EFQLYPDFPTGGSIDVSK------YNDGLRGGSIKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIPY    + LI+ I + I   +I   + + D +A +V I +   +  +
Sbjct: 256 LDSK--TLVIREIPYSKTTTSLIDSILKAIDKGKIKA-KKVDDNTAAEVEIQIHLAS-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   + P+ M +  +L   +       R+E+  R+
Sbjct: 312 SSDKTIDALYAFSDCEVNISPNCCVIEDQK-PRFMTVSEVLCHSVDSTMGLLRKELQIRK 370

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I+ R+   K    A  N+D  I  I    +P      R  +T +
Sbjct: 371 DELLSQLFFASLESIFIEERIYKDKKFEQA-ANVDAAIKHIDERLEPFKKDFIR-EITRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L ++++ + K  + + +  +  +  E + ID  L       +        +KE +
Sbjct: 429 DILHLLEIKMQRILKFNKEKAEELIAKMKQEIKDIDYKLAH---MVDVTIEWFTFLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +     G+I               K
Sbjct: 486 GKD----HHRLT--EIRNFDTIEATKVVEANEKLYINR-QDGFI-----------GTSLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   DG    +    
Sbjct: 528 KDEFV---CNCSDIDDIIIFYKDGLYKIIKVAE 557


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 167/744 (22%), Positives = 312/744 (41%), Gaps = 95/744 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM       F K+A ++
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEMD---DGRFNKAANVI 74

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+ D++V++ Q  +    LI  QGN+G  I GDSAAA RY EAR+++
Sbjct: 75  GN-TMKYHPHGDASIGDAMVQIGQKDL----LIDCQGNWGDPITGDSAAAPRYIEARLSK 129

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
            A  +    + D   ++ +Y+  ++EP+  P KFP LLA G  GIAVG+AT +  HN  E
Sbjct: 130 FANEV--AFNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNFVE 187

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A++ ++     +        I PDF TGG+   S      +Y  G  G +VR R  +
Sbjct: 188 LLDASMEVLRGNRPN--------ILPDFFTGGMADFS------AYNEGMRGGKVRVRAKI 233

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E  +    +V+TEIP+      +I+ I      K    ++ I D +A +V IV+     
Sbjct: 234 TE--KDKKTLVITEIPFSTTTGSVIDSILSA-NDKGKIKIKKIEDNTAANVEIVVQLAP- 289

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            + PD+ +++++  +  E     N   +  G  P  M ++ IL E   H + +L +    
Sbjct: 290 GISPDVTIDALYAFTSCEVSISPN-TCIIKGDKPHFMSVNDILTENTMHTKALLKQELEI 348

Query: 379 RMQAIDR--------RVEILKGLLI-----AYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           R+  +          ++ I +G+          N D ++A++ N  +P    + R    E
Sbjct: 349 RLNELQEKIFFSSLLKIFIQEGMYKHPEYENSGNFDAVVAVLNNLFEPFLPQLYRPIQPE 408

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +    +++  + S+ + +  +   ++  L  E + + + L   +   +      +++K+ 
Sbjct: 409 D-FKKLIDKPMSSITRFDVKKADEQMQALADEIKVVKNHL---RHLTDYAIAWFQKLKDK 464

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           + K    GR+R T   +    +A+       K  +             +      +    
Sbjct: 465 YGK----GRQRKTEIRLFDRVEASKVALANVKLYMN------------REDGFIGTGSGL 508

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI-QLLIDLNHNQDIVT 604
           ++ + +         D +++   +GK       +       G+ I    +    ++  + 
Sbjct: 509 RKDEFVAD---CSDIDEVIVFRENGKCIITKVAD---KTFVGKGILHAQVFKKGDERTIY 562

Query: 605 AFVYDSTCKLLVVSSK---GNAFIVEESEIIANTRKGKTF---LKVSSEEKMKLVVKVTG 658
             +Y      +    +         +E ++   T+  +        + E ++  V     
Sbjct: 563 NMIYKDGESGISYIKRFAVVGVTRDKEYDLTKGTKGSRVLYFTANPNGEAEVVNVQLKPH 622

Query: 659 DHVAVVGENRKLLIFSID--QIPEMSRG-KG-------VRLQSYKDGGISDVICFKI--C 706
             +       K L F ID  +I    RG +G       ++    K  G+S +   KI   
Sbjct: 623 TKL-------KKLQFDIDYAEIAIKGRGSQGNIVSKYPIKKVLLKTKGVSTLAGLKIWYD 675

Query: 707 EGLTWIDSAGRSYNRSENDLLGWL 730
           + L  ++  GR     E D    +
Sbjct: 676 DLLRRLNVDGRGKYLGEFDGEDKI 699


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 167/223 (74%), Gaps = 1/223 (0%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ + 
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE  
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETS 179

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            G   I++TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES
Sbjct: 180 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 152/198 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 155/267 (58%), Gaps = 9/267 (3%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
             I ++Y  GRG   +RA+  +E+   G   I+VTE+P+QV K++LIEKIA+L+  K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIE 60

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            + D+RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ 
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLT 119

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413
           L   L+ +L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       
Sbjct: 120 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIA 179

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +   
Sbjct: 180 RTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLE 239

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFC 500
            I  E+ E+KE F+       RRT   
Sbjct: 240 IIREELTEIKERFNDE-----RRTEIV 261


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 117/230 (50%), Positives = 164/230 (71%), Gaps = 1/230 (0%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           PEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERII 179

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   V+      
Sbjct: 180 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIEIPLD 229


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 163/224 (72%), Gaps = 2/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG+IDGD+AAA RYTEARM++++  +++ +++D
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG SGIAVGMAT+IP H + E+ +  LAL  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +IS+ +L+E+I GPDFPTG  I+  R  I ++Y+ GRG   +RA+  +EE   G   I+V
Sbjct: 121 DISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLRAKTEIEE-HHGKQRIIV 178

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            EIPYQV K++LIEKIAEL+  K+I  + D+RDES  +   ++ 
Sbjct: 179 HEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 145/591 (24%), Positives = 259/591 (43%), Gaps = 66/591 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  +     +   E   + + +    ++ +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 1   MEENQEGAQDEQFESKEELIKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 60

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++       + K A IVG  +   HPHGD S+ D++V++ Q       LI  QGN+GN
Sbjct: 61  MKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQKD----ILIDTQGNWGN 112

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GD AAA RY EAR+++ A  +L        +++ +Y+    EPV  P KFP LLA G
Sbjct: 113 ILTGDRAAAPRYIEARLSKFALEVL--YSPKLTEWQLSYDGRKQEPVNLPVKFPMLLAQG 170

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG++T    HN  E+ +A++  +            + I PDFPTGGI        
Sbjct: 171 AEGIAVGLSTRFLPHNFNELIDASILHLKGKT--------FKIFPDFPTGGIAD------ 216

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           V +Y  G+ G RVR R  + ++ +    +V+ EIPY    S LI+ I +    K    ++
Sbjct: 217 VSNYSDGKRGGRVRIRAKINQLDKN--TLVINEIPYGTNTSSLIDSILKA-NDKGKIKIK 273

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +A +V I++   N ++ PD  +++++  +  E        V+   +    + +  
Sbjct: 274 KIEDNTAAEVEILIHLPN-NMSPDRTIDALYAFTQCENSLAPLGCVIIDHKPI-FLGVSE 331

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE------IIAIIR 408
           +L+    H   +L R    ++  ++ +               Y +I+E      +I  I 
Sbjct: 332 VLRRSTDHTLHLLKRELEIKLDELEEQWHFASLERIFIENRIYRDIEEEETWQGVIQAID 391

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              KP    + R ++TE  +  +  +R++ + K +  + + ++D L A+  ++   L++ 
Sbjct: 392 KGLKPHTKHLKR-AVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEADIAQVKHHLDN- 449

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +     +  +   K    G+ R T   +            IE   + +  +   
Sbjct: 450 ------LIDFAIDYFKKLKKDYGTGKERKTELRLFED---------IEATKVVIRNT--- 491

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +   + +        K+ + +         D ++  + DGK        
Sbjct: 492 --KLYVNRAEGFVGTSLKKDEYVT---ECSDIDDVICFTADGKMMVTKVDT 537


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 112/204 (54%), Positives = 155/204 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEY 220
            E+    LA ID+ +ISIE L+E+
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEH 211


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 115/198 (58%), Positives = 153/198 (77%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           ++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 209 NPEISIEKLLEYIIGPDF 226
           + +ISIE L+E+I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 120/247 (48%), Positives = 161/247 (65%), Gaps = 2/247 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V E +  V ++  +E  +L YA S I  RA+PD RDG KPV RRI++ M++MGL    A 
Sbjct: 15  VNEKIVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMADMGLRPDRAH 74

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
            KSAR+VGEV+GKLHPHGD ++YD+LVRL+Q F  R PL+ G GNFG +D D  AA RYT
Sbjct: 75  VKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD-DGPAASRYT 133

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+   +  +  G+DED VDF   Y+ +  +P V P+  PNLL NG SGIAVGMAT++ 
Sbjct: 134 EARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASGIAVGMATNMA 193

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+  AA  L+ +P+  +E L+ ++ GPD PTGG IV   + + ++YR GRG    
Sbjct: 194 PHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIV-GLDGVRDAYRTGRGRSAR 252

Query: 253 RARWCVE 259
             R   E
Sbjct: 253 APRTRTE 259


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 154/197 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFP 227
           +ISIE L+E+I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 113/204 (55%), Positives = 155/204 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALIDNPEISIEKLLEY 220
            E+    LA ID+ +ISIE L+E+
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEH 211


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 154/696 (22%), Positives = 279/696 (40%), Gaps = 88/696 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +           E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASIRYLHEE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAVRVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  ++ + D ++ +V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVANVCDSIVKASEKGKIK-IKKVEDLTSGNVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTVSDVLRKSVDNTLSLLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        ++D   A I     P      R  +T+  
Sbjct: 371 DEILESLHFASLEKIFIEERIYKDKEFEQAKDMDAACAHIDERLTPYYPRFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L       N +   +     + +
Sbjct: 430 ILKLMEIKMGRILKFNSDKAEELIARMKADIEEIDHHLA------NIVEYTVDWYLMLKN 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKNFPRRT---ELRNFDTIEASKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD----IV 603
               +   +  + D +++   DG+    P  +    +  G+ I        N       V
Sbjct: 529 D---EFLCNCSSLDDVIIFFRDGRYLVTPVSD---KKFVGKNILYANVFKKNDKRTIYNV 582

Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTGDH 660
                    + +   +  +     E ++   T   +        + E ++  V       
Sbjct: 583 VYRDGKEGTQYIKRFAVTSIIRDREYDVTQGTPDSRITYFTANPNGEAEVIKVTLKPNPR 642

Query: 661 VAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       + +IF  D   I    R  +G  L    
Sbjct: 643 V-------RRIIFEEDFSDISIKGRQARGNILTKLP 671


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L++ I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMDIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 261/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 95

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 96  TMQ-FHPHGDASIGDALVQMGQKDL----LVDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 151 LDVVF--NPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           ++A+  +           ++ + PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 209 DSAIKYLKGE--------DFQLYPDFPTGGAIDVSK------YNDGQRGGVLKVRAKIEK 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + I   +I   + + D +A +V I +      +
Sbjct: 255 LDNK--TLVIREIPFSKTTTTLIDSILKAIDKGKIKA-KRVDDNTAAEVEIQVHLAP-GV 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  M++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR
Sbjct: 311 SSDKTMDALYAFSDCEINLSPNCCVIEDNK-PVFLTVSDVLRHGVDRTMGLLRKELQIRR 369

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I++R+   K    A  N+D+ IA +  +  P      R  +T +
Sbjct: 370 GELLEQLFFASLERIFIEQRIYKEKKFEQA-ANMDDAIAFVDQKLTPFKPDFIR-EVTRD 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    +  + AE  +I++ LN      +        +K  +
Sbjct: 428 DILRLMEIKMQRILKFNKDKADELIARIKAEVAEIENDLNH---MTDVTINWFTFIKNKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   + + +     G+I               K
Sbjct: 485 GKD----HPRRT--EIRSFDTIDSAKVVEANQKLYINR-QEGFI-----------GTGLK 526

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I+L    GK   +   +
Sbjct: 527 KDEFV---CNCSDIDDIILFYKTGKYKIIKVAD 556


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 259/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIADALVQLGQKDL----LVDCQGNWGNILTGDSAAASRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +           ++ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASIKYLHKE--------DFKLYPDFQTGGSIDVSK------YNDGERGGAVRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  +  + D ++  V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +L++ + +     R+E+  RR
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDNQKPH-FLTVSDVLRKSVNNTLDLLRQELEIRR 370

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +  R       ++   I+ R+   K    A  N+D     I N   P      R  +T++
Sbjct: 371 NEIRENLHFASLEKIFIEERIYKDKEFEQA-KNMDAACEHIDNRLTPYYPTFIR-EVTKD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ +++  + K    + +  +  + A+ E+ID  L +            R +KE +
Sbjct: 429 DILRLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K      RRT   E+   D     + +   E + +     G+I               K
Sbjct: 486 GKEFP---RRT---ELRNFDTIEATKVIEANEKLYINR-EEGFI-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D +++   DGK    P  +
Sbjct: 528 KDEFI---ANCSPIDDVIIFFRDGKYIITPVAD 557


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 139/572 (24%), Positives = 248/572 (43%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLE---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++  +           E+ + PDF TGG I  S+      Y  G  G  VR R  +E+
Sbjct: 210 DASIHYLHEE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAVRIRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  ++ + D ++ +V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKIK-IKKVEDLTSGNVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  IL++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTVSNILRKSVDNTLSLLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 DEILESLHFASLEKIFIEERIYKDKEFEQAQNMDAACEHIDERLTPYYPQFVR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  + A+ E+ID  L       N +   +     + +
Sbjct: 430 ILKLMEIKMGRILKFNSDKAEELIARMKADIEEIDHHLA------NIVEYTVDWYLMLKN 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKNFPRRT---ELRNFDTIEASKVVEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + L    +  + D +++   DG+    P  +
Sbjct: 529 DEFLS---NCSSLDDVIIFFRDGRYLVTPVSD 557


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 144/385 (37%), Gaps = 59/385 (15%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +++F L + Q +AIL++RL  L  LE  ++ +EL  +L   EK+D++L S     N I  
Sbjct: 1   MAKFGLFKLQSNAILDMRLSKLPGLEREKLAAELKEILELIEKLDAILKSETLIGNIIRV 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ E+K  F              ++         + +I  E + V I++RG+I+      
Sbjct: 61  ELLEIKSKFKCP--------RITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKS 112

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               K       A+   + D ++      + D ++ ++  G+ Y L    +   S    G
Sbjct: 113 YEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 172

Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
           +A+  LI L  ++ I        +D +  L   +  G       SE       G   + +
Sbjct: 173 KAVVNLISLQADEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINL 232

Query: 645 SSEEKMKLVVKVT----------------------------------GDHVAVVGENRKL 670
              +++  VV                                     G  +  V +    
Sbjct: 233 DDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMC 292

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGRSYNRSENDLL 727
           + F+++++ ++ R  +GV    +K+  + +V+   + E  +   +  + +   +      
Sbjct: 293 IKFALNKVRQIGRVSRGVTAIRFKE-NLDEVVGAVVIENDSQEILSVSQKGIGKRTTADE 351

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
             L  RGG G +  K  P++   + 
Sbjct: 352 YRLQSRGGKGVICMKLTPKTKDLVG 376



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 77/255 (30%), Gaps = 30/255 (11%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFKEGDSL 551
              +     KA +     ++       +  G ++           S+ + A++  + D L
Sbjct: 179 ISLQADEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDEL 238

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
              + A++                P  +       GE +  L  ++ +    +    +S 
Sbjct: 239 VTVVIANS---------------EPDESYDDSFEDGEGVSNLQTISEDNSENSL---ESG 280

Query: 612 CKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSE-EKMKLVVKVTGD--HVAVVGE 666
             L  V+ KG       +++    R  +G T ++     +++   V +  D   +  V +
Sbjct: 281 KMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQEILSVSQ 340

Query: 667 NRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
                  + D+    SRG KGV            V    + E +  +           + 
Sbjct: 341 KGIGKRTTADEYRLQSRGGKGVICMKLTPKTKDLVGVVMVDEEMDLMALTSSGKMIRVDM 400

Query: 726 LLGWLGKRGGVGSLV 740
                  R   G +V
Sbjct: 401 QSIRKAGRNTSGVIV 415



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 10/172 (5%)

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILL-LSTDGKAYTLPAGNLLSGRGHGEAIQLL- 593
               +S L     D+ + +L +    ++L  ++  G         +         +  + 
Sbjct: 258 DGEGVSNLQTISEDNSENSLES---GKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIR 314

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KM 650
              N ++ +    + + + ++L VS KG        E    +R GK  + +        +
Sbjct: 315 FKENLDEVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPKTKDL 374

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDV 700
             VV V  +  +  +  + K++   +  I +  R   GV + +     +  +
Sbjct: 375 VGVVMVDEEMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDEVVSI 426


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 143/594 (24%), Positives = 254/594 (42%), Gaps = 71/594 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N         E+ + PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  +  + D ++  V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + 
Sbjct: 430 ILRLMEIKMARILKFNSDKAEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K+     RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 487 KAFP---RRT---ELRNFDTIEATKVIEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            + +    +    D +++   DGK    P  +    +  G+ I        N  
Sbjct: 529 DEFIG---NCSPIDDVIIFFRDGKYIITPVAD---KKFVGKNILYANIFKKNDK 576


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 147/573 (25%), Positives = 254/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 35  LSGMYQNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 91

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 92  TMQ-FHPHGDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 146

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              +   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN++E+C
Sbjct: 147 LDTVF--NPKTTQWQASYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSSKILPHNMRELC 204

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +            + + PDFPTGG I  SR      Y  G+ G  ++ R  +E+
Sbjct: 205 QAAIHYLKGE--------PFRLFPDFPTGGSIDASR------YNDGQRGGSIKVRAKIEK 250

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LIE I + +   +I   + + D +A +V I +      +
Sbjct: 251 LDNK--TLVIREIPFSKNTTTLIESILKAVDKGKIKA-KRVDDNTAAEVEIQVHLAP-GI 306

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   + P+ + +  +L+  +       R E+  R+
Sbjct: 307 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PRFLTVSEVLRHNVDSTMGLLRMELQIRK 365

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  N+D  +  I N   P      R  L   
Sbjct: 366 DELLEQLFFSSLEKIFIEERIYKDKKFENA-ENMDVAVEHIDNRLTPFKPNFIR-ELRRE 423

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    L  +  E   ID  L       +      + + + +
Sbjct: 424 DIMRLMEIKMQRILKFSKDKADELLARIKEEIAGIDHDLAH---MTDVTIKWFKFLIDKY 480

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   +     + +   E + +     G+I               K
Sbjct: 481 GKD----HPRLT--EIKSFETIEATKVVEANEKLYINR-REGFI-----------GTGLK 522

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D IL+   DGK   +   +
Sbjct: 523 KDEFV---CNCSDIDDILVFHRDGKYKIMRVAD 552


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 143/594 (24%), Positives = 254/594 (42%), Gaps = 71/594 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N         E+ + PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  +  + D ++  V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + 
Sbjct: 430 ILRLMEIKMARILKFNSDKAEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K+     RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 487 KAFP---RRT---ELRNFDTIEATKVIEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            + +    +    D +++   DGK    P  +    +  G+ I        N  
Sbjct: 529 DEFIG---NCSPIDDVIIFFRDGKYIITPVAD---KKFVGKNILYANIFKKNDK 576


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 115/197 (58%), Positives = 154/197 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFP 227
           +ISIE L+E+I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 119/211 (56%), Positives = 164/211 (77%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSA
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA RYTEARM
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFP 227
            E+ +  L L+D+ + S+E L+++I GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 169/715 (23%), Positives = 310/715 (43%), Gaps = 92/715 (12%)

Query: 6   ISNSNTLVEENVKA--VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +S   +  + N     + L    E  +L YA   I +RA+P + DG KPV RRI+H++ E
Sbjct: 1   MSEEESQGDNNKLHNIIPLDGLYENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSLKE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NID 122
           M       F K+A ++G    K HPHGD S+ D++V++ Q  +     I  QGN+G  + 
Sbjct: 61  MD---DGRFNKAANVIGN-TMKYHPHGDASIGDAMVQIGQKNLM----IDCQGNWGDPVT 112

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RY EAR+++ A  I    + D   ++ +Y+  + EP+  P KFP LLA G  G
Sbjct: 113 GDSAAAPRYIEARLSKFA--IDVAFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGAEG 170

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG+AT I  HN  E+ +A++A+++    +        + PDFPTGG+   S       
Sbjct: 171 IAVGLATKILPHNFVELLDASIAVLNGIRPN--------LLPDFPTGGLADASN------ 216

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G+ G +VR R  + E  R    +V+TE+P+      L+E +       +I  ++ I 
Sbjct: 217 YNEGQRGGKVRVRARIAE--RDKKTLVITEVPFSTTTGGLMESVVAANDKGKIK-IKSIV 273

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D ++++V I L      + PD+ +++++  +D E     N  V+   + P+ M ++ +L 
Sbjct: 274 DHTSKNVEI-LINLAPGISPDVTIDALYAFTDCEVSISPNTCVIHDDK-PRFMSVNDMLT 331

Query: 363 EWLAHRREVLFRRSSFRMQAIDR--------RVEILKGLLI-----AYLNIDEIIAIIRN 409
           E   H +E+L +    R+  +          ++ I +G+          N + ++ ++  
Sbjct: 332 ESTYHTKELLKQELEIRLNELKEKIFFSSLLKIFIQQGMYKNPAYETSANFEAVVEVLNG 391

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
             +P      R  L E+    +++  + S+ + +  +   ++  L  E ++++  L   K
Sbjct: 392 LFEPFFSQFYRTILAED-YKKLIDKPMSSITRFDVKKADEQMKTLENEIKEVNHHL---K 447

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              +      +++K+ + K    GR R T  E+   D+    Q  +    +   +   G+
Sbjct: 448 HLNDYAIAWFQKLKDKYGK----GRERKT--ELRTFDRVEASQVALANVKLYANL-EDGF 500

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           I               K+    K        D I++   DG+        +      G+ 
Sbjct: 501 I-----------GSGLKKD---KFIADCSDLDEIIVFRADGRCL---VTKIQDKVFVGKE 543

Query: 590 IQLL-IDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--- 641
           I  + +   +++  V   +Y      T  +   S  G     +E ++   T+  +     
Sbjct: 544 IIHVGVFKKNDERTVYNMIYKDGANGTSYIKRFSVLG-VTRDKEYDLTKGTKGSRVLYFS 602

Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYK 693
              + E ++  +       +       K L+F  D  ++    RG  G  L  Y 
Sbjct: 603 ANPNGEAEVVNIQLKPHSKL-------KKLVFDEDFAEVGIKGRGSMGNILTKYP 650


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 147/585 (25%), Positives = 254/585 (43%), Gaps = 66/585 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++ N    E      +    ++ +L YA   I ERA+P + DGFKPV RRI+HA+ EM  
Sbjct: 8   NDPNQQEAEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD- 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A +VG+ +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD 
Sbjct: 67  --DGRYNKVANVVGQTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTGDG 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  ++        +++ +Y+    EPV  P KFP LLA G  GIAV
Sbjct: 120 AAASRYIEARLSKFALEVVF--SPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T I  HN  E+ +A++  +            + + PDFPT GII          Y  
Sbjct: 178 GLSTKILPHNFIELIDASIKHLQGK--------RFKLYPDFPTAGIIDIGN------YND 223

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  G +VR R  + +  +    +V++EIPY    S LI+ I +    K    ++ I D +
Sbjct: 224 GERGGKVRVRARIAQQDKN--TLVISEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNT 280

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A +V I++   +  + PD  +++++  +  ET       ++   + P  M +  +L+   
Sbjct: 281 AAEVEILVHLPS-GISPDKTIDALYAFTACETSISPLGCIIEDNK-PVFMGVSEMLRRST 338

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE------IIAIIRNEDKPK 414
            H  E+L       +  +  +               Y +I+E      +IA I    KP 
Sbjct: 339 DHTVELLQAELEILLGELQEQWHAASLERIFIENRIYRDIEEEETWEGVIAAIGKGLKPH 398

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R  +TE  +  +  +R++ + + +  + +  LDNL     +    L       + 
Sbjct: 399 TGHLRR-EVTEEDIVRLTEIRIKRISRFDLDKAQEHLDNLEKRIAETKHHLAH---LTDY 454

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                RE+K+ F      GR R +   V            IE   + +  +     +   
Sbjct: 455 AIDYFRELKKNFG----AGRERKSEIRVF---------DEIEATKVVIRNT-----KLYV 496

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +          ++ + +         D I++ +  G+       +
Sbjct: 497 NREEGFIGTSLRKDEYVTD---CSDIDDIIVFTKSGQMMITRVDS 538


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 154/605 (25%), Positives = 259/605 (42%), Gaps = 72/605 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
              +E VK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +      
Sbjct: 26  DQTDEAVKH-QLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DG 81

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAY 129
            + K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA 
Sbjct: 82  RYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQKEL----LIDCQGNWGNILTGDSAAAP 136

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++
Sbjct: 137 RYIEARLSKFALDVVF--NPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSS 194

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            I  HN  E+C+AA+A +           E+ + PDF TGG I  SR      Y  G  G
Sbjct: 195 KILPHNFNELCDAAIAYLHGE--------EFKLYPDFQTGGSIDVSR------YNDGERG 240

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VR R  + ++      + ++EIPY    S LI+ I + I   +I  +  + D +A  V
Sbjct: 241 GVVRVRAKISKLDNK--TLCISEIPYGKTTSSLIDSILKAIEKGKIK-IRKVDDNTARKV 297

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
            I++      +  D  +++++  +D E     N  V+   +    + +  +L++ + + R
Sbjct: 298 EILIHLAP-GVSSDKTLDALYAFTDCEVNISPNCCVIDNKKPH-FLTVSDVLRKSVNNTR 355

Query: 370 EVLFRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           ++L +    +       +                        N+D     I     P   
Sbjct: 356 DLLRKELEIQKNETLETLHFASLEKIFIEERIYKDKQFEQAENMDIACEHIDERLTPFYP 415

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R  +T+  +  ++ +++  + K  + +    +  L AE E+ID+ L           
Sbjct: 416 QFVR-EVTKEDILRLMEIKMARILKFNKDKADELIARLKAEIEEIDNHLAH---LTEYTI 471

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
              R +K+ + K      RRT   E+   D     + +   E + +     G+I      
Sbjct: 472 EWYRHLKDKYGKDFP---RRT---EIRNFDTIVATKVVEANEKLYINR-EEGFI------ 518

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
                    K+ + +    +    D +++   DGK        +      G+ I  +   
Sbjct: 519 -----GTGLKKDEFI---CNCSDIDDVIIFYKDGKY---KIVRISDKLFVGKNILYVNIF 567

Query: 597 NHNQD 601
             N  
Sbjct: 568 KKNDK 572


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 146/196 (74%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KKSAR
Sbjct: 1   TPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLA 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ID+  IS
Sbjct: 181 EVVNGCLAYIDDENIS 196


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      V+ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVI 223


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/224 (51%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 154/197 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFP 227
           +ISIE L+E+I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 148/584 (25%), Positives = 264/584 (45%), Gaps = 67/584 (11%)

Query: 9   SNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           ++  ++E  ++++ +    +E +L YA   I ERA+P + DGFKPV RRI+ +M ++   
Sbjct: 12  NDGEIQEPTESITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRRIMQSMKDLD-- 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A IVG  +   HPHGD S+ D++V++ Q       LI  QGN+GNI  GD A
Sbjct: 70  -DGRYNKVANIVGHAMQ-YHPHGDASISDAMVQIGQKD----MLIDMQGNWGNIFTGDPA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  IL   +    +++ +Y+    EPV  P KFP LLA G  GIAVG
Sbjct: 124 AASRYIEARLSKFALEILF--NPKITEWQSSYDGRRKEPVNLPVKFPLLLAQGAEGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T +  HN  E+ +A++  +     +        I PDFPTGG I       V +Y  G
Sbjct: 182 LSTKVLPHNFIELIDASIKHLQGKRFT--------IYPDFPTGGEID------VTNYNDG 227

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +VR R  +         I++TEIPY    S LI+ I +    K    ++ I D +A
Sbjct: 228 LRGGKVRVRAKM--HAPDKNTIIITEIPYSTNTSSLIDSILKA-NEKGKIKIKKIEDNTA 284

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            DV I++   +  + PD  M++++  ++ E+       V+   + P  + +  +L+    
Sbjct: 285 ADVEIMIHLHS-GISPDKTMDALYAFTNCESSISPLGCVIEDNK-PLFVGVTEMLRRSAD 342

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKP 415
           H  ++L +    ++  ++ +        I   N            D +IA I    KP  
Sbjct: 343 HTVDLLKQELEIQLDEVEEQWHFASLERIFIENRIYRDIEEEETWDGVIAAIDKGLKPHI 402

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + R ++T + +  +  +R++ + K +  + + ++D L     ++   L   +      
Sbjct: 403 GHLKR-AITVDDITRLTEIRIKRISKFDIDKAQQKIDALEERIAQLKHHL---EHLIEYA 458

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
               + +K+ + +    GR R T  E+   D     + ++    + V  +  G++     
Sbjct: 459 IDYFKSLKKNYGE----GRERKT--EIKTFDDIVATKVVMRNTKLYVNRAE-GFV----- 506

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                     K  + +         D I++ + DG        +
Sbjct: 507 ------GTALKRDEYVTD---CADIDDIIVFTKDGTMMVTKVDS 541


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 140/594 (23%), Positives = 250/594 (42%), Gaps = 71/594 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N         E+ + PDF TGG I  S+      Y  G  G  +R R  +E+
Sbjct: 210 DASISYLHNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAIRVRSKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + EIPY    + + + I +     +I  +  + D ++  V I++      +
Sbjct: 256 IDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKIK-IRKVEDLTSGSVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +L++ + +   +L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTVSDVLRKSVDNTLALLRQELEIRK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             I   +                        N+D     I     P      R  +T+  
Sbjct: 371 GEILESLHFASLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTPYYPTFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  +  + E+ID  L +            R +K+ + 
Sbjct: 430 ILRLMEIKMARILKFNSDKAEELIARMKKDIEEIDRHLAN---IVEYTVDWFRMLKDKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K            E+   D     + +   E + +     G+I               K+
Sbjct: 487 KDFP------RHTELRNFDTIEATKVIEANEKLYINR-EEGFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
            + +    +    D +++   DGK    P  +    +  G+ I        N  
Sbjct: 529 DEFIG---NCSPIDDVIIFFRDGKYIITPVAD---KKFVGKNILYANIFKKNDK 576


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/199 (57%), Positives = 154/199 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L+ ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 213 SIEKLLEYIIGPDFPTGGI 231
           SIE L+E+I GPDFPT  I
Sbjct: 181 SIEGLMEHIPGPDFPTAAI 199


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 169/673 (25%), Positives = 284/673 (42%), Gaps = 75/673 (11%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I ERA+P + DGFKPV RRI+HAM  +       + K A IVG+   K HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDRLD---DGRYNKVANIVGD-TMKFHPH 61

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD+S+ D+LV L Q  +    LI  QGN+GNI  GD AAA RY EAR T  A  ++    
Sbjct: 62  GDRSIADALVGLGQKGL----LIDTQGNWGNILTGDPAAASRYIEARFTSFARDVVF--S 115

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ EA++A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYLR 175

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG++  +           RG  RVR R  +  +      +
Sbjct: 176 GQ--------PFQLLPDFPTGGVMDAT-----NYRDGERGTGRVRIRARI--LTESKKLL 220

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
            +TEIP+ V    LI+ I       +I  +  I D +A+ V I++       DP+   ++
Sbjct: 221 RITEIPFGVTTEILIDSIVSAAEKGKIK-IARIEDNTAQHVDILVHL-PAGADPEQTRKA 278

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +F  S  E     N  V+   + P+ M +  IL+      +E+L +    R++ ++    
Sbjct: 279 LFAFSACEVSISPNACVIVEEK-PRFMCVSDILRYNTDSTKEILRQEQEIRLKELNEAWH 337

Query: 389 ILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
                 I   N            +E++  I  E +P    + R  +T + +  +  ++++
Sbjct: 338 QASLEKIFIENRIYLSIEDSETWEEVLGTIDRELQPFASRL-RAPITRDDLVRLTEIKIK 396

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            + K + ++    +  L  + E+    LN   Q           +++ +         R 
Sbjct: 397 RISKFDAFKADQHIRQLEEDIEQTQKNLN---QLTKFTIRWFEALRKKYG----AAYPRK 449

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
           T  E+S        Q  +  E  T+ I + G+           +    K+G+ +      
Sbjct: 450 T--EISSFGSVNRAQVAVANE--TLYIDDEGF-----------AGYGVKKGNPV---CKC 491

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
            T D +L++   G    L    +      G+    +  +    D V   +Y       V 
Sbjct: 492 STLDDVLIIDNAG---VLKIVRIQDKFFAGKNPLYISVIKKGDDPVFNLIYRDGKDGPVY 548

Query: 618 SSK---GNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI- 672
           + +   G     +E  +    +  + F   V   E+    + V   ++  V + R L+  
Sbjct: 549 AKRFRIGGFTRDKEYPLTRGAKGTRIFHFSVHETEENSSQISV-NVYLKAVLKLRNLIRP 607

Query: 673 FSIDQIPEMSRGK 685
           F    +   +RG 
Sbjct: 608 FHFADLRIKNRGA 620


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 141/260 (54%), Positives = 193/260 (74%)

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           LNMNVLS G+VP V+ L  +L+EWL HR+EVL RRS FR+  I++R+EIL G LIAYLN+
Sbjct: 1   LNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNL 60

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           DE+I IIR ED+PK  ++  F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK  
Sbjct: 61  DEVIRIIREEDEPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTD 120

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ LL SG +QW +I+ EI+ V+E F  +T LG+RRTTF      D   + QAMIE+EP+
Sbjct: 121 LEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPV 180

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
           T+V+S +GW+R++K H  D S L FKEGD LK+A HA TTD++L  +T GK +T+ A  L
Sbjct: 181 TIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTL 240

Query: 581 LSGRGHGEAIQLLIDLNHNQ 600
             GRGHGE I++L+D+ ++Q
Sbjct: 241 PGGRGHGEPIRILVDMENDQ 260


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 256/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P+KFP LL  G  GIAVG+++ I  HN+ EIC
Sbjct: 152 LDVVF--NPKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +     +        + PDFPTGG         VE Y  G+ G  ++ R  +E+
Sbjct: 210 QAAIHYLKGEPFT--------LYPDFPTGG------SIDVEKYNDGQRGGTLKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + I   +I   +   + +AE    V    +  +
Sbjct: 256 LDNK--TLVIKEIPFSKTTTTLIDSILKAIDKGKIKARKVDDNTAAEVEIQVH--LSPGI 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR
Sbjct: 312 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PVFLTVSDVLRHSVDSTMGLLRKELEIRR 370

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +          ++   I+ R+   K    A  +ID  +A + +  +P      R  +T +
Sbjct: 371 NELLEQLFFASLEKIFIEERIYKDKKFEEA-KDIDAAVAHVDDRLEPFKPHFIR-EVTRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L +++  + K  + +    +    AE ++ID  L       +        ++  +
Sbjct: 429 DILRLLEIKMHRILKFNKDKANDFIVRTKAEIKEIDHDLAH---MTDVTINWFEFIQTKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +     G++               K
Sbjct: 486 GKE----HPRLT--EIRSFDTIEATKVVEANEKLYINR-QEGFV-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   DGK   +   +
Sbjct: 528 KDEFV---CNCSDIDDIIIFYRDGKYKIIRVAD 557


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 146/582 (25%), Positives = 249/582 (42%), Gaps = 68/582 (11%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           T  E  V+   L    +  +L YA   I ERA+P + DG KPV RRI+HA   M +    
Sbjct: 47  TQDEGGVRK--LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHA---MKVVDDG 101

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAY 129
            + K A IVG+ +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA 
Sbjct: 102 RYNKVANIVGQTMQ-YHPHGDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAAG 156

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY EAR+++ A  ++   ++   ++  TY+    EPV  P KFP LLA G+ GIAVG+A+
Sbjct: 157 RYIEARLSKFANEVVF--NKKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLAS 214

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            I  HN  E+  A +A +           E+ + PDFPTGG+   SR      Y  G  G
Sbjct: 215 KILPHNFVELINACIAHLQGR--------EFQLYPDFPTGGMADVSR------YNDGLRG 260

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             V+ R  + ++      + +TEIPY      + + I +     +I  ++ + D +A+ V
Sbjct: 261 GAVKVRAKISKID--KRTLAITEIPYTTTTESIKDSIIKANDKGKIK-IKKVDDNTADRV 317

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
            IV+   +     D  +++++  +D E     N  ++     P  + +  IL+    H +
Sbjct: 318 EIVIQV-SPDESSDKTIDALYAFTDCEVSIAPNACLI-WEDKPHFLGVSEILRRSAEHTK 375

Query: 370 EVLFRRSSFRMQAIDRRVE-----------ILKGLLIAYLNIDEIIAIIRNEDKP-KPVM 417
            +L R    R+  ++                L  L+    + +E  A +    +P K ++
Sbjct: 376 WLLGRELEIRLGELNEAWHAASLERIFIENKLYQLIEGSKSREEAYAAVDKGLEPFKKLL 435

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
               +L++ Q   +  L+   + + +  +  +E+  +  + +     LN   +       
Sbjct: 436 RREVTLSDVQ--RLTELKFIRISRYDSDKADNEIRQIEEDIKSTQYDLNHLTEYA----- 488

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
            +   + I  K      RRT   E                E   V ++N           
Sbjct: 489 -VAYYERIRDKYGKGRERRTELREFDNI------------EATKVAVTNAKLYVDRAEGF 535

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +     K+    ++       D +++ + DG+       +
Sbjct: 536 FGI-GKSMKD---AELVCDCSDIDDVIVFTKDGRYVITKVSD 573


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/198 (57%), Positives = 153/198 (77%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK 
Sbjct: 1   KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 60

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  
Sbjct: 61  HPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 120

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
           ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 180

Query: 207 IDNPEISIEKLLEYIIGP 224
           ID+ +ISIE L+E+I GP
Sbjct: 181 IDDEDISIEGLMEHIPGP 198


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 145/573 (25%), Positives = 260/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 170

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 171 TMQ-FHPHGDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 226 LDVVF--NPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +           ++ + PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 284 DAAIKYLRGE--------DFQLYPDFPTGGAIDVSK------YNDGQRGGVLKVRAKIEK 329

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + I   +I   + + D +A +V I +      +
Sbjct: 330 LDNK--TLVIREIPFSKTTTTLIDSILKAIDKGKIKA-KRVDDNTAAEVEIQVHLAP-GV 385

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  M++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR
Sbjct: 386 SSDKTMDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLLRKELQIRR 444

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I++R+   K    A  +++E +A +  +  P      R  +T +
Sbjct: 445 GELLEQLFFASLERIFIEQRIYKEKKFEQA-ADMNEAVAFVDLKLTPFKPDFIR-EVTRD 502

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    +  + AE  +I+  L   +   +        +K  +
Sbjct: 503 DILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDL---EHMTDVTINWFMFIKNKY 559

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E+   D     + +   + + +     G+I               K
Sbjct: 560 GNE----HPRHT--EIRSFDTIDSAKVVEANQKLYINR-QEGFI-----------GTGLK 601

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   +GK   +   +
Sbjct: 602 KDEFV---CNCSDIDDIIIFYKNGKYKIIKVAD 631


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 113/222 (50%), Positives = 157/222 (70%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N     +  ++ + +   ++  +L YA+S I  RAIPD+RDG KPVHRRII+AM ++ + 
Sbjct: 6   NDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMT 65

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +    KKSARIVGEVIGK HPHGD +VY+++VR+AQ F  RYPLI G GNFG++DGD  A
Sbjct: 66  YEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPA 125

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA+M+++A  I++ ++++   F D Y+  + EP   P  FPNLL NG SGIAVGM
Sbjct: 126 AMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGM 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           AT+IP HN+ E+ +  +A+  NPEI+  +L++ I GPDFPTG
Sbjct: 186 ATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 76/362 (20%), Positives = 136/362 (37%), Gaps = 61/362 (16%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVM-----------------------------VSRFSLTE 425
           +A  NIDE++A IR+                                        ++L+E
Sbjct: 1   MAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSE 60

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL+ L ++   ++  EL+ L  + ++   +L S ++    I+ E+ EVK+ 
Sbjct: 61  AQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQ 120

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F+       RRT   E+         + +I +E + V +++ G+I+          +   
Sbjct: 121 FAVP-----RRT---EIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGG 172

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
             +S +  KE D +     A+T  ++L  +TDG  Y L    L  G     G+AI  ++ 
Sbjct: 173 KGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILP 232

Query: 596 LNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           +     I      D         +++  +S G     + S+     R GK  +K   +  
Sbjct: 233 IPTGVSIAAIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHA 292

Query: 650 M----KLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDGGISDVICF 703
                   +    D V +V  + + + F    +    SR   GVR       G   V+  
Sbjct: 293 DTTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKL--NGDDKVVSM 350

Query: 704 KI 705
            I
Sbjct: 351 SI 352



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 70/255 (27%), Gaps = 65/255 (25%)

Query: 521 TVVISNRGWIRSLKSHSV------DLSALHFKEGDS----LKIALHAHTTDRILLLSTDG 570
            V  ++ G +R  K             A+ F E D     L  A  A   D ++L++  G
Sbjct: 257 VVFATSAGTVRRNKLSDFTNVMRNGKIAMKF-EDDHADTTLINARIASNDDDVMLVTNSG 315

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----------------------- 607
           +A   PA ++             I LN +  +V+  +                       
Sbjct: 316 RAIRFPATDVRVFNSRASVGVRGIKLNGDDKVVSMSIIRHFDASSEERTAYLKMRRAMAG 375

Query: 608 -----------------YDSTCK---------LLVVSSKGNAFIVEESEIIANTRKGKTF 641
                            +              LL ++ KG   +    +     R G   
Sbjct: 376 LADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGV 435

Query: 642 LKVS----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
             +       + +        D + +     + +   ++ I   SR   GV++     G 
Sbjct: 436 TAMDKAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGE 495

Query: 697 ISDVICFKICEGLTW 711
           +   + +   +G   
Sbjct: 496 VVVSVAWIADQGDET 510


>gi|332880940|ref|ZP_08448610.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681114|gb|EGJ54041.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 911

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 158/648 (24%), Positives = 281/648 (43%), Gaps = 80/648 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T   +++    L    +  +L YA   I ERA+P + DGFKPV RRI+H+M  M    
Sbjct: 28  PETSPHDSITH-HLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILHSMKRMD--- 83

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAA
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAA 138

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+
Sbjct: 139 APRYIEARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ++ I  HN+ EIC+AA+  + +          + + PDF TGG I  S+      Y  G 
Sbjct: 197 SSKILPHNLNEICDAAVNYLHDE--------PFQLYPDFLTGGSIDVSK------YNDGG 242

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  V+ R  + ++      + + EIPY    + LI+ I + I   +I + +   + +AE
Sbjct: 243 RGGVVKVRAKITKIDNK--TLAIREIPYGKTTTTLIDSILKAIEKGKIKVRKVEDNTAAE 300

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
               +L      +  D  +++++  +D E     N  V+   + P  + +  +LK  + +
Sbjct: 301 --VEILVHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDDKK-PCFLTVSEVLKRSVDN 357

Query: 368 -----RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
                R+E+L R+   +       ++   I+ R+   +    A  ++D   A I     P
Sbjct: 358 TLGLLRKELLIRKGELQESLHFASLEKIFIEERIYKDRNFEQA-KDMDAACAHIDERLTP 416

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               + R  +T++ +  ++++++  + K  + +    +  +  E  +ID  L++      
Sbjct: 417 FYPQMIR-EVTQDDILKLMDIKMARILKFNKDKANDAIARMKDEIARIDRDLDN---MVE 472

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
                 R +K  +         R T  E+   D     + +   E + +     G+I   
Sbjct: 473 VTCNWFRMLKAKYGDE----HPRHT--ELRNFDTIVATKVVEANEKLYINR-EEGFI--- 522

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                       K+ + +    +    D  ++   DG         +      GE  +  
Sbjct: 523 --------GTSLKKDEFI---ANCSDLDDAIIFYRDGTY---KVIRISDKTFVGETERSK 568

Query: 594 IDLNHNQDIVTAFVYDSTCK---LLVVSSKG-NAF-IVEESEIIANTR 636
            +     +I+ A V+    K     V    G + F  ++   + + TR
Sbjct: 569 AE-KKKAEIIHAAVFKRNDKRTIYNVAYRDGKDGFYYIKRFNVTSITR 615


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 119/221 (53%), Positives = 165/221 (74%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F 
Sbjct: 8   DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTE
Sbjct: 68  KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           A+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP 
Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
           H++ E+ +  L L+D+ + S+E+++++I GPDFPTGGII  
Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYG 228


>gi|330864104|emb|CBX74176.1| hypothetical protein YEW_JA39640 [Yersinia enterocolitica W22703]
          Length = 387

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 111/298 (37%), Gaps = 26/298 (8%)

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I  E+  +KE+++ +     RRT   E++        + +I +E + V +S++G+++
Sbjct: 1   MEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQEDVVVTLSHQGYVK 52

Query: 532 SL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                     +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 53  YQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 112

Query: 584 R--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
                G  I  L+ L  N+ I        Y+    + + ++ G       +E       G
Sbjct: 113 SRGARGRPIVNLLPLEPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAG 172

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + ++  +++  V    G + V +     K++ F   Q+  M R   GVR  +    G
Sbjct: 173 IIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRGINL--NG 230

Query: 697 ISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
              VI   I  G    +      Y +           R   G +  K   R+GK + +
Sbjct: 231 DDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGA 288



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  EGD L   
Sbjct: 128 EPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 187

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                T+ ++L S  GK    P   + S       ++  I+LN +  +++  +     ++
Sbjct: 188 DLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATGVRG-INLNGDDRVISLIIPRGDGEI 246

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK--MKLVVKVTGDHVAVVGENRKL 670
           L V+  G        E    +R   G   +KVS      +  V     D + ++ +   L
Sbjct: 247 LTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTL 306

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +   + ++  + R  +GV L    + 
Sbjct: 307 VRTRVSEVSVVGRNTQGVTLIRTTED 332


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 171/768 (22%), Positives = 312/768 (40%), Gaps = 111/768 (14%)

Query: 5   NISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           N  N   L     E+    + +    E  +L YA   I +RA+P + DGFKPV RRI+H+
Sbjct: 8   NNDNPEELTPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHS 67

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           + EM       + K A ++G    K HPHGD S+ D++V+L Q  +    LI  QGN+G+
Sbjct: 68  LKEMD---DGRYNKVANVIGN-TMKYHPHGDASIGDAMVQLGQKNL----LIDCQGNWGD 119

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
              GDSAAA RY E R+++ A  +    + +  +++ +Y+  + EPV  P KFP LLA G
Sbjct: 120 PTTGDSAAAPRYIEGRLSKFALEVTF--NPETTEWQLSYDGRNKEPVTLPVKFPLLLAQG 177

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+AT I  HN  E+ + ++ +++    +        I PDF TGG+   S    
Sbjct: 178 AEGIAVGLATKIMPHNFNELIDGSIQVLNGERPN--------ILPDFLTGGMADCS---- 225

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  G+ G ++R R  +EE  R    + +TEIP+      LIE +      K    ++
Sbjct: 226 --AYNEGQRGGKIRVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVVAA-NDKGKIKIK 280

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +AE+V I++      + PD+ +++++  +  E     N  V+     P  M ++ 
Sbjct: 281 KIEDNTAENVEIIVHLAP-GISPDVTIDALYAFTACEVSISPNTCVI-KNDRPHFMSVND 338

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-------------NIDEIIAI 406
           +L E   + + +L +    ++  +  ++     L I                + D ++ +
Sbjct: 339 VLIENTKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPDYENSGDFDTVVQV 398

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +     P   +  R    E+    +++  + S+ + +  +   ++  L  E + +     
Sbjct: 399 LNELFTPFFELFYRPIEPED-YKRLIDKPMSSITRFDVKKADEQMAALEEEIKTVKR--- 454

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +Q           +++ + K    GR R T  E+   DK    Q  +    + V    
Sbjct: 455 NLRQLTEYAIAWFERLRDKYGK----GRERRT--ELRAFDKVEATQVALANAKLYVNR-E 507

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRG 585
            G+I               K+ + +         D I++   DGK         +  G+ 
Sbjct: 508 EGFI-----------GTGMKKDEFVSD---CSDIDDIIVFRGDGKYVVTKIQDKVFVGKD 553

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV--------EESEIIANTRK 637
               I + +    ++  +   VY         +                +E ++   ++ 
Sbjct: 554 I---IHVAVFKKGDERTIYNAVYKEGG-----TGTSYVKRFAVVGVTRDKEYDVSKGSKG 605

Query: 638 GKTF---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG----- 686
            K        + E ++  V       +       + L F +D  +I    R  +G     
Sbjct: 606 SKILYFTANPNGEAEVINVQLKPHSKL-------RKLTFDLDLAEIAIKGRASQGNIVSK 658

Query: 687 --VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
             V+  ++K  G+S +   KI   E L  ++   R     E D    +
Sbjct: 659 YPVKKITFKSAGVSTLAGRKIWYDEILKRLNVDERGKYLGEFDGDDKI 706


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ    RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V P++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +E    G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K+ LIEKIA+L+  K+I  + D+RDES  +   ++F
Sbjct: 180 TEIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGMPIVF 223


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 249/581 (42%), Gaps = 66/581 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +     E      +    ++ +L YA   I +RAIP + DG KPV RRI+H+M E+    
Sbjct: 3   TEEYSHEGESLKKVSGLYKDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSMRELE--- 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG    K HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GDSAA
Sbjct: 60  DGRYNKVANIVGN-TMKYHPHGDASITDAMVQIGQKEL----LIDTQGNWGNIYTGDSAA 114

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+T  A  ++   +    ++  +Y+  ++EP+  P KFP LLA G  GI VG+
Sbjct: 115 AARYIEARLTPFALEVVF--NPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGL 172

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T I  HN  E+  A++A +           ++ + PDF T G +  S       Y  G 
Sbjct: 173 STKILPHNFNELINASVAYLKGK--------KFELYPDFLTAGYLDVSE------YNDGH 218

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G +VRAR  + +       +V++E+PY    + LI+ I +    K    ++ I D +++
Sbjct: 219 RGGKVRARAKITQTD--KHTLVISELPYSKTTTDLIDSILKA-NEKGKIKIKKIEDNTSD 275

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            V I++   +  + PD  +++++  +D +     N  V+  G  P  M +  ILK    H
Sbjct: 276 KVEILIH-IHNDVSPDKTIDALYAFTDCQVTISPNACVIV-GDKPMFMNVSEILKMNTDH 333

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPV 416
              +L +     +  +           I   N            ++++  I    KP   
Sbjct: 334 TVSLLKKELEIELHELQESWHFSSLERIFIENRIYHDIEEVKTWEDVLKTIDAGLKPHTK 393

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            + R ++TE  +  +  +R++ + + +  + K  + +L  + E++   L       N IA
Sbjct: 394 HLLR-AVTEEDILKLTEIRIKRISRFDLDKFKENIASLEGKIEQVKYNLE------NLIA 446

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             I     I  K     +RRT   E+   D     +  +  E         G+I      
Sbjct: 447 YAIDYYLNIQKKYGKDKQRRT---ELRIFDTIDATKVAVANEKFYANF-EEGFI------ 496

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
                    K+    +        D I+    DG    +  
Sbjct: 497 -----GTSLKKD---QYLFDCSDIDDIITFRKDGSMKVVKV 529


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 154/197 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDFP 227
           +ISIE L+E+I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 147/573 (25%), Positives = 262/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQKDL----LVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+ + I  HN+ +IC
Sbjct: 152 LDVVF--NPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           ++ I PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 210 DAAISYLKGE--------DFCIYPDFPTGGSIDVSK------YNDGQRGGTLKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + I   +I   + + D +A +V I +      +
Sbjct: 256 LDNK--TLVIKEIPFSKTTTTLIDSILKAIDKGKIKARK-VDDNTAAEVEIQVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   + P  + +  +L+  +       R+E+L R 
Sbjct: 312 SSDKTIDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHSVDSTMGLLRKELLIRM 370

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  N+D  +A I +  +P      R  +T +
Sbjct: 371 KELNEQLFFASLEKIFIEERIYKDKKFEEA-KNMDAAVAHIDSRLEPFKPTFIR-EITRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    +  +LAE + I   L+             + +K+ +
Sbjct: 429 DILRLMEIKMQRILKFNKDKADELIAKILAEIKDIKHDLDH---MTEVTISWFQFIKDKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   D     + +   E + +  +  G++               K
Sbjct: 486 GKD----HPRLT--EIKNFDTIEATKVVEANEKLYINRAE-GFV-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +   +    D I++   DGK   +   +
Sbjct: 528 KD---EYICNCSDIDDIIIFYRDGKYKIIRVAD 557


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 170/747 (22%), Positives = 308/747 (41%), Gaps = 97/747 (12%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  +   +  NV  + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM 
Sbjct: 1   MEENEDEILHNV--IPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
                 F K A ++G    K HPHGD S+ D++V++ Q  +    LI  QGN+G  I GD
Sbjct: 59  ---DGRFNKVANVIGN-TMKYHPHGDASIGDAMVQIGQKDL----LIDTQGNWGDPITGD 110

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RY E R+++ A  ++   + D  D++ +Y+  + EPV  P KFP LLA G  GIA
Sbjct: 111 SAAAARYIEGRLSKFALEVVF--NPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIA 168

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG+AT +  HN  E+ +A++ ++     +        I PDFPTGG+   S+      Y 
Sbjct: 169 VGLATKVMPHNFIELIDASIEVLRGNRPN--------ILPDFPTGGLADFSQ------YN 214

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+ G ++R R  + E+ +    +V++EIPY    + LI+ I      K    ++ I D 
Sbjct: 215 EGQRGGKIRVRAKISELDKK--TLVISEIPYSTTTTGLIDSIIAA-NDKGKIKIKKIEDN 271

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +A++V IV+      + PDL +++++  +  ET    N  V+     P  M ++ IL E 
Sbjct: 272 TAKNVEIVIHLAP-GISPDLTIDALYAFTACETSISPNTCVI-KKDKPHFMSVNDILIES 329

Query: 365 LAHRREVLFRRSSFRMQAIDR--------RVEILKGLLI-----AYLNIDEIIAIIRNED 411
             + + +L R    ++  +          ++ I +G+          N +E++ ++    
Sbjct: 330 TNYTKALLKRELEIKLHDLQEKIFFSSLLKIFIQEGMYKNPEYENSSNFEEVVKVLHRLF 389

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
            P    + R    E+    +++  + S+ + +  +   ++  L  +   +     + +  
Sbjct: 390 DPFKSSLYREIEAED-FKKLIDKPMSSITRFDVKKADEQMAALEKDITLVKK---NLRHL 445

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +        +K+ F K    GR R T  E+   D+       +              ++
Sbjct: 446 TDFAIDYFLRLKDKFGK----GRERKT--EIRAFDRVEAAHVALAN------------VK 487

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +          K+    +        D I++   DG        +       G+ I 
Sbjct: 488 FYVNREDGFVGTGLKKD---EYLFDCSDIDDIIVFREDGSFIVTKVQD---KTFVGKGIL 541

Query: 592 LLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTF---LKV 644
            +     N D  T  +     K     +   + G     +E ++   T+  K        
Sbjct: 542 HVGIFKKNDDRTTYNMIYRDGKSGTAYIKRFAVGGVTRDKEYDLTKGTKGSKVLYFTANP 601

Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK--------GVRLQSYKD 694
           + E ++  +          + + RK L F ID  +I    RG          ++  + K 
Sbjct: 602 NGEAEVVNIALKP------MSKLRK-LSFDIDFAEIAIKGRGSQGNIATKFAIKKITLKS 654

Query: 695 GGISDVICFKICEGLTWIDSAGRSYNR 721
            G+S +   KI             + +
Sbjct: 655 KGVSTLAGRKIWYDDIVKRLNENGHGK 681


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 171/768 (22%), Positives = 312/768 (40%), Gaps = 111/768 (14%)

Query: 5   NISNSNTLV----EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           N  N   L     E+    + +    E  +L YA   I +RA+P + DGFKPV RRI+H+
Sbjct: 8   NNDNPEELTPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHS 67

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           + EM       + K+A ++G    K HPHGD S+ D++V+L Q  +    LI  QGN+G+
Sbjct: 68  LKEMD---DGRYNKAANVIGN-TMKYHPHGDASIGDAMVQLGQKNL----LIDCQGNWGD 119

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
              GDSAAA RY E R+++ A  +    + +  +++ +Y+  + EPV  P KFP LLA G
Sbjct: 120 PTTGDSAAAPRYIEGRLSKFA--LEVAFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQG 177

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG+AT I  HN  E+ + ++ +++    +        I PDF TGG+   S    
Sbjct: 178 AEGIAVGLATKIMPHNFNELIDGSIQVLNGERPN--------ILPDFLTGGMADCS---- 225

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
             +Y  G  G ++R R  +EE  R    + +TEIP+      LIE +      K    ++
Sbjct: 226 --AYNEGMRGGKIRVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVVAA-NDKGKIKIK 280

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +AE+V I++      + PD+ +++++  +  E     N  V+     P  M ++ 
Sbjct: 281 KIEDNTAENVEIIVHLAP-GISPDVTIDALYAFTACEVSISPNTCVI-KNDRPHFMSVND 338

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-------------NIDEIIAI 406
           +L E   + + +L +    ++  +  ++     L I                + D ++ +
Sbjct: 339 VLIENTKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPDYENSGDFDTVVQV 398

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           +     P   +  R    E+    +++  + S+ + +  +   ++  L  E + +     
Sbjct: 399 LNELFTPFFELFYRPIEPED-YKRLIDKPMSSITRFDVKKADEQMAALEEEIKNVKR--- 454

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           + +Q           +++ + K    GR R T  E+   DK    Q  +    + V    
Sbjct: 455 NLRQLTEYAIAWFERLRDKYGK----GRERRT--ELRAFDKVEATQVALANAKLYVNR-E 507

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRG 585
            G+I               K+ + +         D I++   DGK         +  G+ 
Sbjct: 508 EGFI-----------GTGMKKDEFVSD---CSDIDDIIVFRGDGKYVVTKIQDKVFVGKD 553

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV--------EESEIIANTRK 637
               I + +    ++  +   VY         +                +E ++   ++ 
Sbjct: 554 I---IHVAVFKKGDERTIYNAVYKEGG-----TGTSYVKRFAVVGVTRDKEYDVSKGSKG 605

Query: 638 GKTF---LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG----- 686
            K        + E ++  V       +       + L F +D  +I    R  +G     
Sbjct: 606 SKILYFTANPNGEAEVINVQLKPHSKL-------RKLTFDLDLAEIAIKGRASQGNIVSK 658

Query: 687 --VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
             V+  ++K  G+S +   KI   E L  ++   R     E D    +
Sbjct: 659 YPVKKITFKSAGVSTLAGRKIWYDEILKRLNVDERGKYLGEFDGDDKI 706


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 123/219 (56%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI+ A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTEAR+T+VA  +L+ +D+D VDF+DTY+   SEP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 153/196 (78%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 211 EISIEKLLEYIIGPDF 226
           +ISIE L+E+I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 146/194 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VRL Q F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N  ++I++L+ YI
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 150/620 (24%), Positives = 268/620 (43%), Gaps = 77/620 (12%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL----EERYLAYALSTIKERAIPDLRDGFKPVHRR 56
           M  D     +     ++K  +++  L    +  +L YA   I ERA+P + DG KPV RR
Sbjct: 1   MSEDFNEEHSDYKPADIKDTNVKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRR 60

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I+H+M  M       + K A IVG  +   HPHGD S+ D+LV+L Q  +    L+  QG
Sbjct: 61  ILHSMRRME---DGRYNKVANIVGHTMQ-FHPHGDASIADALVQLGQKDL----LVDCQG 112

Query: 117 NFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           N+GNI  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP L
Sbjct: 113 NWGNILTGDSAAASRYIEARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLL 170

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           LA G  GIAVG+++ I  HN  E+C+A++  +            + + PDF TGG I  S
Sbjct: 171 LAQGVEGIAVGLSSKILPHNFNELCDASIRYLHKEG--------FKLYPDFQTGGSIDVS 222

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           +      Y  G  G  VR R  +E++      + + EIPY    + + + I +     +I
Sbjct: 223 K------YNDGERGGTVRVRSKIEKIDNK--TLAIKEIPYGKTVASVCDSIVKASEKGKI 274

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             +  + D ++  V I++      +  D  +++++  +D E     N  V+   +    +
Sbjct: 275 K-IRKVEDLTSGSVEILVHL-AAGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FL 331

Query: 356 PLDGILKEWLAH-----RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNID 401
            +  +L++ + +     R E+  RR+  R       ++   I+ R+   K    A  ++D
Sbjct: 332 TVSDVLRKSVDNTLDLLRLELEIRRNEIRESLHFASLEKIFIEERIYKDKEFEQA-KSMD 390

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                I     P      R  +T+  +  ++ +++  + K    + +  +  + ++ E+I
Sbjct: 391 AACEHIDRRLTPYYPTFIR-EVTKEDILRLMEIKMARILKFNSDKAEELIARMKSDIEEI 449

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           D  L +            R +K+ + K    G  R T  E+   D     + +   E + 
Sbjct: 450 DRHLAN---IVEYTVDWYRMLKDKYGK----GFPRRT--ELRSFDTIEATKVIEANEKLY 500

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
           +     G+I               K+ + +    +    D +++   DGK    P     
Sbjct: 501 INR-EEGFI-----------GTGLKKDEFIG---NCSPIDDVIIFFRDGKYIITPVSE-- 543

Query: 582 SGRGHGEAIQLLIDLNHNQD 601
             +  G+ I        N  
Sbjct: 544 -KKFVGKNILYANIFKKNDK 562


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 163/657 (24%), Positives = 285/657 (43%), Gaps = 84/657 (12%)

Query: 4   DNISNSNTLVEENVKAVSLRFAL----EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           DN ++SN   E N    S+   L    +  +L YA   I ERA+P + DGFKPV RRI+H
Sbjct: 19  DNNAHSNYQPETNPHD-SITHHLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILH 77

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M  M       + K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+G
Sbjct: 78  SMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWG 129

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           NI  GDSAAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA 
Sbjct: 130 NILTGDSAAAPRYIEARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQ 187

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG+++ I  HN+ EIC+AA+  +            + + PDF TGG I  S+  
Sbjct: 188 GVEGIAVGLSSKILPHNLNEICDAAVNYLHGE--------PFQLYPDFLTGGSIDVSK-- 237

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
               Y  G  G  V+ R  + ++      + + EIPY    + LI+ I + I   +I + 
Sbjct: 238 ----YNDGGRGGVVKVRAKITKIDNK--TLAIREIPYGKTTTTLIDSILKAIEKGKIKVR 291

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           +   + +AE    +L      +  D  +++++  +D E     N  V+   + P  + + 
Sbjct: 292 KVEDNTAAE--VEILVHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDDKK-PCFLTVS 348

Query: 359 GILKEWLAH-----RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEII 404
            +LK  + +     R+E+L R+   +       ++   I+ R+   +    A  ++D   
Sbjct: 349 EVLKRSVDNTLGLLRKELLIRKGELQESLHFASLEKIFIEERIYKDRNFEQA-KDMDAAC 407

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             I     P    + R  +T++ +  ++++++  + K  + +    +  +  E  +ID  
Sbjct: 408 THIDERLTPFYPQMIR-EVTQDDILKLMDIKMARILKFNKDKANDAIARMKDEIARIDRD 466

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L++            R +K  +         R T  E+   D     + +   E + +  
Sbjct: 467 LDN---MVEVTCNWFRMLKAKYGNE----HPRHT--ELRNFDTIVATKVVEANEKLYINR 517

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584
              G+I               K+ + +    +    D  ++   DG         +    
Sbjct: 518 -EEGFI-----------GTSLKKDEFI---ANCSDIDDAIIFYRDGTY---KVIRISDKT 559

Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKG-NAF-IVEESEIIANTR 636
             GE  +   +     +I+ A V+    K     V    G + F  ++   + + TR
Sbjct: 560 FVGETERSKAE-KKKAEIIHAAVFKRNDKRTIYNVAYRDGKDGFYYIKRFNVTSITR 615


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/219 (55%), Positives = 160/219 (73%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/189 (53%), Positives = 141/189 (74%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RMT++A  +L  + ++ VD+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLGEVIDGC 194


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 248/572 (43%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 29  LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 85

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 86  TMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFA 140

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 141 LDVVF--NPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 198

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A+++ + N         E+ + PDF TGG I  S+      Y  G  G  V+ R  + +
Sbjct: 199 DASISYLRNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAVKIRSKINK 244

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           V      + +TEIPY    + +I+ I + +   +I  +  + D +A +V I++       
Sbjct: 245 VDNK--TLAITEIPYGRTTTSVIDSILKAVDKGKIK-IRKVDDNTAANVEILVHLAP-GT 300

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +L++   +   +L +    + 
Sbjct: 301 SSDKTIDALYAFTDCEVSISPNCCVIDDQKPH-FLTISHVLRKSADNTLSLLRQELEIKK 359

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                        ++D   A I     P      R  +T+  
Sbjct: 360 DELQESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPFYSQFIR-EVTKED 418

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  ++ +++  + K    + +  +  +  +  +I++ L       N +   I+  + +  
Sbjct: 419 ILRLMEIKMGRILKFNSDKAEEAIARMNEDIAEINNHLA------NIVEYTIQWYRMLKD 472

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 473 KYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTSLKK 517

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +         D +++   DG+    P  +
Sbjct: 518 DEFV---ACCSDIDDVIIFYRDGRYMVTPVAD 546


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 160/212 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
            +  L L+DN + S+E+++++I GPDFPTGGI
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI 214


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 147/572 (25%), Positives = 262/572 (45%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P++ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 152 --LETVFNPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA++ +   + S        I PDF TGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 210 SAAISYLKGKDFS--------IYPDFATGGSIDVSK------YNNGQRGGTLKIRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    S + E I + I   +I  +  + D +A +V I L   + + 
Sbjct: 256 LD--HKTLVIREVPFTKTASSIQESITKAIEKGKIK-IRKVEDMTASEVEIHLHL-SPNT 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK  + H RE+L +    R 
Sbjct: 312 SSDKTIDALYAFTDCEISISPNCCVIENNKPH-FLTISDVLKHSVDHTRELLKQELEIRK 370

Query: 381 QAIDRRV-------------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             ++ ++                +       ++ E++A + ++ +P      R  +T   
Sbjct: 371 HELEEQLFYNSLERIFIEERIYKEHKFETAKDLKEVVAFVDSKIEPFKKHFIR-EVTRED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L ++++ + K  + +    +  + AE  +ID  L+   +         + +K  + 
Sbjct: 430 IIHLLEIKMQRILKFNKDKADDVIIKIKAEIAEIDKDLS---EMTRVTIEWFKHLKGKYG 486

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+   D     + +   E + +  S+ G+I               K+
Sbjct: 487 KE----HIRKT--EIKNFDTIIASKVIDANEKLYIDRSS-GFI-----------GTGLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + ++   +    D I++   DGK   +   +
Sbjct: 529 SEFVQ---NCSDLDDIIIFYRDGKYKVIRVAD 557


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 153/610 (25%), Positives = 276/610 (45%), Gaps = 81/610 (13%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++    ++ +L YA   I ERA+P   DG KPV RRI+HAM EM       + K A +
Sbjct: 7   KVTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEMD---DGRYNKVANV 63

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           +G+ +   HPHGD S+ D+LV + Q  +    L+  QGN+G+I  GDSAAA RY E R++
Sbjct: 64  IGQAMQ-YHPHGDASIGDALVNMGQKDL----LVDTQGNWGDINTGDSAAAPRYIEGRLS 118

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  ++   +    +++ +Y+    EPV  P KFP LLA GT GIAVG+AT +  HN  
Sbjct: 119 KFALDVIF--NPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHNFN 176

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ +A++ L+   E++        I PDF TGG +       V +YR G  G R+R R  
Sbjct: 177 ELIDASIELLRGNEVT--------IYPDFATGGTMD------VTNYRHGVKGGRLRVRVD 222

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +E+V      + +  +PY V    LIE I +   A +I  ++ I D +A+DV I +   +
Sbjct: 223 IEQVS--RKILAIKNVPYGVTTENLIESIKKANDANKIK-VKKIIDNTAKDVEIQVHL-S 278

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE-----VL 372
             ++P+  +++++  ++ E     N  V+   + P  + ++ +LK      ++     +L
Sbjct: 279 TGVEPEQTIDALYAFTNCEVSISPNACVILDDK-PCFIKVEELLKINTQKTKDLLEQELL 337

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTEN 426
            R+S  + + +   +E +      Y +I+E      ++  I     P      R  + E 
Sbjct: 338 IRKSELQEKMLYSSLEKIFIENRIYRDIEECETWEAVLETIDKGLNPFKQDFYR-EIGEE 396

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +  ++++ + K + ++    +  L  E  +++  L S            RE+K+ +
Sbjct: 397 DLIRLTEIKIKRISKFDSFKADELMKRLGDELAEVERNLKS---LTKYAIRYFRELKKKY 453

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K  +       F +++  D     Q +             G+I               K
Sbjct: 454 GKDRERRTIIQEFEDINAKDVVINNQKLYVNRE-------DGFI-----------GYGLK 495

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           +    +  +     D ++    DGK                + +++   +   ++I+   
Sbjct: 496 KD---EYVVDCSDIDEVITFCEDGKY---------------KIVKIAPKVFIGKNIIHVA 537

Query: 607 VYDSTCKLLV 616
           V+D + K LV
Sbjct: 538 VFDKSDKNLV 547


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 153/601 (25%), Positives = 263/601 (43%), Gaps = 79/601 (13%)

Query: 3   VDNISNSNTLVEENVKAVSLRFAL---------EERYLAYALSTIKERAIPDLRDGFKPV 53
            ++I +S+     + K V               +  +L YA   I ERA+P + DG KPV
Sbjct: 8   KNDIQSSDKEAHSDYKPVDQGDETVKHQLSGMYQNWFLDYASYVILERAVPHINDGLKPV 67

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI+H+M  +       + K A IVG  +   HPHGD S+ D+LV+L Q  +    LI 
Sbjct: 68  QRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LID 119

Query: 114 GQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            QGN+GNI  GD AAA RY EAR+++ A  ++   +    +++ +Y+  + EPV  P KF
Sbjct: 120 CQGNWGNILTGDDAAAPRYIEARLSKFALDVVF--NPKTTEWQASYDGRNREPVTLPVKF 177

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGII 232
           P LLA G  GIAVG+++ I  HN  E+C+AA+A +           E+ + PDF TGG I
Sbjct: 178 PLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGE--------EFHLYPDFQTGGSI 229

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
             SR      Y  G  G  VR R  + ++      + ++EIPY    S LI+ I + I  
Sbjct: 230 DVSR------YNDGERGGVVRVRAKISKIDNK--TLCISEIPYGKTTSSLIDSILKAIEK 281

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
            +I + +   D++  D   +L      +  D  +++++  +D E     N  V+   +  
Sbjct: 282 GKIKVRKV--DDNTADKVEILVHLAPGVSSDKTLDALYAFTDCEVNISPNCCVIDNKKPH 339

Query: 353 QVMPLDGILKEWLAH-----RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYL 398
             + +  +L++ + +     R+E+  +R+          ++   I+ R+   K    A  
Sbjct: 340 -FLSVSVVLRKSVDNTLSLLRQELNIQRNETLETLHFASLEKIFIEERIYKDKQFEQA-E 397

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           N+D     I     P      R  +T+  +  ++ +++  + K  + +    +  L A+ 
Sbjct: 398 NMDAACEHIDERLTPFYPQFVR-EVTKEDILKLMEIKMARILKFNKDKADEFITKLKADI 456

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           E+ID+ L                +KE + K+     RRT   E+   D     +     E
Sbjct: 457 EEIDNHLAH---ITEYTIDWYTRIKEKYGKNFP---RRT---EIRNFDTIVATKVAEANE 507

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
            + +     G+I               K+    +   +    D +++   DGK   +   
Sbjct: 508 KLYINR-EEGFI-----------GTGLKKD---EYICNCSDIDDVIIFYKDGKYKIVRVS 552

Query: 579 N 579
           +
Sbjct: 553 D 553


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/268 (30%), Positives = 153/268 (57%), Gaps = 4/268 (1%)

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+
Sbjct: 1   AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 60

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           RDES      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L
Sbjct: 61  RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCL 119

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMV 418
           + +L H++ V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++
Sbjct: 120 EHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLI 179

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +FSLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E
Sbjct: 180 EQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREE 239

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           + E+KE F+         +    +   D
Sbjct: 240 LTEIKERFNDERRTEIVTSGLETIEDED 267


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 145/573 (25%), Positives = 260/573 (45%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 95

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 96  TMQ-FHPHGDASIGDALVQMGQKDL----LIDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    D++ +Y+  + EP+  P KFP LLA G  GIAVG+++ +  HN+ EIC
Sbjct: 151 LDVVF--NPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+  +           ++ + PDFPTGG I  S+      Y  G+ G  ++ R  +E+
Sbjct: 209 DAAIKYLRGE--------DFQLYPDFPTGGAIDVSK------YNDGQRGGVLKVRAKIEK 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I + I   +I   + + D +A +V I +      +
Sbjct: 255 LDNK--TLVIREIPFSKTTTTLIDSILKAIDKGKIKA-KRVDDNTAAEVEIQVHLAP-GV 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  M++++  SD E     N  V+   + P  + +  +L+  +       R+E+  RR
Sbjct: 311 SSDKTMDALYAFSDCEINISPNCCVIEDNK-PCFLTVSDVLRHGVDRTMGLLRKELQIRR 369

Query: 376 SSFRMQA---------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                Q          I++R+   K    A  +++E +A +  +  P      R  +T +
Sbjct: 370 GELLEQLFFASLERIFIEQRIYKEKKFEQA-ADMNEAVAFVDLKLTPFKPDFIR-EVTRD 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    +  + AE  +I+  L   +   +        +K  +
Sbjct: 428 DILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDL---EHMTDVTINWFMFIKNKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E+   D     + +   + + +     G+I               K
Sbjct: 485 GNE----HPRHT--EIRSFDTIDSAKVVEANQKLYINR-QEGFI-----------GTGLK 526

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   +GK   +   +
Sbjct: 527 KDEFV---CNCSDIDDIIIFYKNGKYKIIKVAD 556


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/219 (55%), Positives = 160/219 (73%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 163/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 256/585 (43%), Gaps = 66/585 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           S    L +   + + +    ++ +L YA   I ERA+P + DGFKPV RRI+H+M ++  
Sbjct: 8   SKDEQLNKPKEELMRVTGMYKDWFLDYASYVILERAVPAMEDGFKPVQRRIMHSMKDLD- 66

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD 
Sbjct: 67  --DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQKDL----LIDTQGNWGNILTGDR 119

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  +L   +    +++ +Y+    EPV  P KFP LLA G  GIAV
Sbjct: 120 AAAPRYIEARLSKFALEVL--YNPKLTEWQLSYDGRKKEPVNLPVKFPMLLAQGGEGIAV 177

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T +  HN  E+ +A++  +            + + PDFPTGGI        +  Y  
Sbjct: 178 GLSTRLLPHNFNELIDASIKHLQGK--------RFKLFPDFPTGGIAD------ISHYND 223

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+ G RVR R  + ++ +    +V+TEIP+    + LI+ + +    K    ++ I D +
Sbjct: 224 GKRGGRVRVRAKISQLDKN--TLVITEIPFGTTTTSLIDSVLKA-NEKGKIKIKKIEDNT 280

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A +V I +   N ++ PD  +++++  +  E        V+   + P+ + +  IL+   
Sbjct: 281 AAEVEIQIHLPN-NISPDRTIDALYAFTQCENSLSPLGCVIVDNK-PEFLGVSDILRSST 338

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPK 414
            H   +L R     +  ++ +        I   N            + +I+ I    KP 
Sbjct: 339 DHTLHLLKRELEITLDELEEQWHFASLERIFIENRIYREIEEEETWEGVISAIDEGLKPH 398

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R ++TE  +  +  +R++ + K +  + + ++D L  E  +I   L+      + 
Sbjct: 399 ITHLKR-AVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDEIARIKHHLDH---LIDY 454

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                 ++KE + +  D       F ++  +        +             G+I    
Sbjct: 455 AIDYFTKLKEKYGQDKDRKTELRLFEDIEASKVVIRNTKLYVNR-------KEGFI---- 503

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                      K  + +         D I+  + DGK        
Sbjct: 504 -------GTALKRDEYVTD---CSDIDDIICFTADGKMMVTKVDT 538


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 145/194 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+ GIAVGMAT+IP HN+ EI     ALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N  ++I++L+ YI
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 160/212 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
            +  L L+DN + S+E+++++I GPDFPTGGI
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI 214


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV  ++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNNAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 145/196 (73%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           IVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGNFG++DGDSAAA RYTE RM 
Sbjct: 61  IVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  ++++ VDF   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLG 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ID+ +IS
Sbjct: 181 EVISGCLAYIDDEDIS 196


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 145/567 (25%), Positives = 254/567 (44%), Gaps = 67/567 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DG KPV RRI+H+M E+       + K A I+G    K 
Sbjct: 84  QKWFLDYASYVILERAVPYVNDGLKPVQRRILHSMRELD---DGRYNKVANIIGN-TMKY 139

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 140 HPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVVF 195

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+A+ I  HN  E+ +A +A
Sbjct: 196 --NPKTTNWKPSYDGRNREPITLPIKFPLLLAQGVEGIAVGLASKILPHNFNELIDACIA 253

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + +         ++++ PDFPTGG+I  S+      Y  G  G  V+ R  +E+     
Sbjct: 254 HLKHE--------DFVLYPDFPTGGMIDVSK------YCDGMRGGNVKIRAKIEKDNNNR 299

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TEIP+    S LI+ I +    K    ++ I D +A DV I++      +  D  
Sbjct: 300 -ALKITEIPFGRTTSSLIDSIIKA-NEKGKIKIKKIDDNTARDVEILIQLAP-GVSSDKT 356

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   + P+ MP+  IL++       +L      R++ +  
Sbjct: 357 IDALYAFTDCELSISPNSCVIEEEK-PRFMPISDILRQSADDTVALLKLELEIRLKELLE 415

Query: 386 RVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +                         ++ +IA +    +P    + R  +T++ V  +L
Sbjct: 416 DLHYVSLERIFIEERIYKDKQFEESETMELVIAHVHRRLQPFLPELYR-EVTDDDVKKLL 474

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++++ + K    +    + +L  E   +           + I   I   + I +K    
Sbjct: 475 EIKMKRILKFSSEEADHYIRSLNEEIAVVKH------NIEHIIPYSIAYYERIKAKYGKG 528

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             R+T   E+   +     + +I  E + +     G+I               K+ + + 
Sbjct: 529 RERKT---EIRNFENIEAAKVVIANEKLYINR-EEGFI-----------GTALKKDEFI- 572

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN 579
                   D +++   DG  Y     +
Sbjct: 573 --CECSDMDDVIVFKKDGTYYVTKVAD 597


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 148/194 (76%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N +++I++L+ YI
Sbjct: 181 ENGDLTIDELMTYI 194


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/639 (24%), Positives = 261/639 (40%), Gaps = 76/639 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N     L   ++  +L YA   I++RAIP+L DG KPV RRI+ ++ E        F K 
Sbjct: 54  NKVETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHEKD---DGRFIKV 110

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEA 134
           A I G    + HPHG+ ++ D+LV +      +  LI GQGNFGNI  GD AAA RY E 
Sbjct: 111 ATISGH-CAQYHPHGEAAIGDALVVIT----NKRYLIEGQGNFGNIYTGDPAAAPRYIEC 165

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R+T++A   L   +++  +F  +Y+  + EPV  PSK P LL  GT GIAVGM+  I  H
Sbjct: 166 RLTELARNELF--NDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPH 223

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           N  E+ EA +A++            + + PDFPTGG++          Y  G+G  +VRA
Sbjct: 224 NFPELLEAQIAILKKQ--------PFKVLPDFPTGGLMD------AREYADGKGSIKVRA 269

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           +       +    +V+ EIP       LI  I +     +I  ++ I D ++E+  I + 
Sbjct: 270 KIK----AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEAEIEI- 323

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                +  D L+++++  +D E      + V+   R  + M +  +L+E  A   + L R
Sbjct: 324 KAPSGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVE-MTVSEVLRENTAQLVDTLKR 382

Query: 375 RSSFRMQAIDRRVE------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
               + + +   +             I K +     N + +   + +  KP    + R  
Sbjct: 383 ELELKEKKLQEELHFKTLVRIFIENRIYKKIEQCKTN-EAVYEAVYDGFKPFRKEMIR-D 440

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L +  V+ +L +R+R +   +  + + E+D +   K  +       K         +  +
Sbjct: 441 LVDTDVEMLLGVRIRRISLFDINKHREEIDKI---KADLSETAKHLKNLTKYAIGRLEAL 497

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E +        + + + EV   D A        K          G++         +S 
Sbjct: 498 LEKYGPIYPRLTKSSRYDEVEAKDVAF-------KAFKVAYDRESGYV------GHKVSG 544

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
             F+        +     D++LL+  DG         L      G  +      + ++  
Sbjct: 545 EEFR--------VDCTKFDKLLLIFRDGHY---KVTELQEKLFVGPDVVYCGIPDRDRIF 593

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641
             A+       L   +  G   I+   E      K K  
Sbjct: 594 TLAYTNREATYLKRFTFGG---IIMNKEYFCIPEKSKIL 629


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/212 (55%), Positives = 160/212 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
            +  L L+D+ + S+E+++++I GPDFPTGGI
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGI 214


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 150/645 (23%), Positives = 274/645 (42%), Gaps = 78/645 (12%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            I   + + +       +    ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+
Sbjct: 16  PIEEGSGIDDSQDALTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRILHSLKEL 75

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DG 123
                  + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  G
Sbjct: 76  D---DGRYNKVANVVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTG 127

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RY EAR+++ A  ++        +++ +Y+    EPV  P KFP LLA G  GI
Sbjct: 128 DRAAASRYIEARLSKFALDVVF--SPKITEWQLSYDGRKKEPVNLPVKFPLLLAQGAEGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG++T +  HN  E+ +A++  +            + + PDFPT GII       V +Y
Sbjct: 186 AVGLSTKVLPHNFNELIDASIKHLKGQ--------RFKLYPDFPTAGIID------VNNY 231

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G  G ++R R  + +  +    +V+ EIPY    S LI+ I +    K    ++ I D
Sbjct: 232 NDGLRGGKIRVRARMSQ--KDKNTLVINEIPYGTNTSSLIDSILKA-NDKGKIKIKKIED 288

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +A DV I++   +  + PD  +++++  +  E+       ++   +    + +  +LK+
Sbjct: 289 NTAADVEILVHLPS-GISPDKTIDALYAFTSCESSISPLSCIIEDNKPI-FIGVSEMLKQ 346

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE------IIAIIRNEDK 412
                 E+L      ++  ++ +               Y +I+E      +I+ I    K
Sbjct: 347 STDLTVELLKAELEIQLSELEEQWHFASLERIFIENRIYRDIEEEETWEGVISAIDKGLK 406

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P    + R ++TE  +  +  +R++ + K +  + +  LD+L  +  ++   L +     
Sbjct: 407 PHTKHLKR-AVTEEDIVRLTEIRIKRISKFDIDKAQQYLDSLEEKIAEVKHHLAN---LI 462

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           +      + +K  + K    GR R +   V            IE   + +  +     + 
Sbjct: 463 DFAIDYFKNLKTKYGK----GRERKSEIRVF---------DDIEATKVVIRNT-----KL 504

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             +          +  + +         D I++ + DGKA         S    G+ I  
Sbjct: 505 YVNREEGFVGTSLRRDEYVTD---CSDIDDIIVFTKDGKAMITKVD---SKTFIGKNIIH 558

Query: 593 LIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
           +          T   +Y           KG    ++   + + TR
Sbjct: 559 VAVFKKKDKRTTYNMIYKDG--------KGGPTYIKRFNVTSVTR 595


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 147/573 (25%), Positives = 248/573 (43%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    ++ +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 114

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 115 TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ 
Sbjct: 170 --LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  S+      Y  G  G  V+ R  + +
Sbjct: 228 DASVAYLRGE--------EFTLYPDFQTGGYIDVSK------YNDGERGGSVKVRAKITK 273

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V++EIPY    S LIE I +     +I  ++ + D +A +V I++      +
Sbjct: 274 LDNK--TLVISEIPYGKTTSTLIESILKANDKGKIK-IKKVDDNTARNVEILVHLAP-GV 329

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +LK          R E+  ++
Sbjct: 330 SSDKTIDALYAFTDCEISISPNCCVIMDNKPH-FLTVSDVLKHSTDDTLHLLRTELEIQK 388

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  ++DE IA I     P      R  +T  
Sbjct: 389 GELEESLFFASLEKIFIEERIYKDKEFEEA-KDMDEAIAHIDKRLDPFKPHFIR-EVTRE 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ +++  + K    +  + +     E  KID  L       +        +KE +
Sbjct: 447 DILKLMEIKMGRILKFNTDKCNATIAQYKEEIAKIDDHLAH---IVDYTVDWFMMLKEKY 503

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K+           EV   D     + +   E + +  +  G+I               K
Sbjct: 504 GKNYP------RMTEVRNFDTIEATKVVEANEKLYINRAE-GFI-----------GTGLK 545

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I+L   +G    +    
Sbjct: 546 KDEFV---CNCSDIDDIILFYRNGTYKVVKVSE 575


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 134/567 (23%), Positives = 247/567 (43%), Gaps = 68/567 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  +   
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ-F 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVVF 114

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 115 --NPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N         E+ + PDF TGG I  S+      Y  G  G  V+ R  + +V    
Sbjct: 173 YLRNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAVKIRSKINKVDNK- 217

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TEIPY    + +I+ I + +   +I  +  + D +A +V I++         D  
Sbjct: 218 -TLAITEIPYGRTTTSVIDSILKAVDKGKIK-IRKVDDNTAANVEILVHLAP-GTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   +    + +  +L++   +   +L +    +   +  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDQKPH-FLTISHVLRKSADNTLSLLRQELEIKKDELQE 333

Query: 386 RVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +                        ++D     I     P      R  +T++ +  ++
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTPFYSQFIR-EVTKDDILRLM 392

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +++  + K    + +  +  +  +  +I++ L       N +   I+  + +  K    
Sbjct: 393 EIKMGRILKFNSDKAEEAIARMNEDIAEINNHLA------NIVEYTIQWYRMLKEKYGKN 446

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E+   D     + +   E + +     G+I               K+ + + 
Sbjct: 447 FPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTSLKKDEFV- 490

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN 579
                   D +++   DG+    P  +
Sbjct: 491 --ACCSDIDDVIIFYRDGRYMVTPVAD 515


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 247/567 (43%), Gaps = 68/567 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG  +   
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ-F 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQKDL----LVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVVF 114

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 115 --NPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            + N         E+ + PDF TGG I  S+      Y  G  G  V+ R  + +V    
Sbjct: 173 YLRNE--------EFKLYPDFQTGGSIDVSK------YNDGERGGAVKIRSKINKVDNK- 217

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TEIPY    + +I+ I + +   +I  +  + D +A +V I++         D  
Sbjct: 218 -TLAITEIPYGRTTTSVIDSILKAVDKGKIK-IRKVDDNTAANVEILVHLAP-GTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   +    + +  +LK+   +   +L +    +   +  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDQKPH-FLTISHVLKKSADNTLSLLRQELEIKKDELQE 333

Query: 386 RVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +                        ++D     I     P      R  +T++ +  ++
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTPFYSQFIR-EVTKDDILRLM 392

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +++  + K    + +  +  +  +  +I++ L       N +   I+  + +  K    
Sbjct: 393 EIKMGRILKFNSDKAEEAIARMNEDIAEINNHLA------NIVEYTIQWYRMLKEKYGKN 446

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E+   D     + +   E + +     G+I               K+ + + 
Sbjct: 447 FPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTSLKKDEFV- 490

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN 579
                   D +++   DG+    P  +
Sbjct: 491 --ACCSDIDDVIIFYRDGRYMVTPVAD 515


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 113/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 162/690 (23%), Positives = 286/690 (41%), Gaps = 83/690 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   L       +L YA   I +RA+P + DG KPV RRI+H M EM       F K A 
Sbjct: 62  EEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEME---DGRFHKLAN 118

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
           IVG    + HPHGD S+  +LV L Q    R  L+  QGNFGN + GD AAA RY EAR+
Sbjct: 119 IVGA-TMRFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARL 173

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A+ +L   +     ++ +Y+    EPV  P+KFP +L  G  GIAVG+AT I  HN 
Sbjct: 174 TAFAKDVLF--NPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNF 231

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++C AA+  +            + I PDFPTGG+   S       Y  G  G +V+ R 
Sbjct: 232 NDLCRAAINHLQGKT--------FRIYPDFPTGGVADFSE------YNDGERGGKVKIRA 277

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E   R  + + +TE+P+      LIE I       +I  +  + D +A+ V I++   
Sbjct: 278 KIEI--RSKYLLAITELPFGSTTESLIESILAANAKGKIK-IRHVDDNTADAVEILVHLP 334

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             S DP+ L++ +++ +  +T       V+   +    + +  ILK  +   + +L R  
Sbjct: 335 QGS-DPEKLIQQLYVFTACQTNLSPAACVIEDDKPH-FLGVREILKRSVDKTKALLKREL 392

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------DKPKPVMVS-----RFSLT 424
             R   ++++       L      + I   I          D+ +  +       R  +T
Sbjct: 393 EIRQAELEQQWHWDS--LERIFIEERIYRRIEKSKTWQSVLDEIREGLQPFLKQLRRPVT 450

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           ++ +  +  +R++ +     +Q    +  +     ++     + K           +++E
Sbjct: 451 DDDITRLTEIRIKRISAYNRFQADEAIKKIE---AELRETKANLKALTAYAVAWFEQLQE 507

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            + K      RRT++ E+ + + A   + +   + + V     G+I            L+
Sbjct: 508 KYGKGLK---RRTSYDEIEQINAA---EVVSANQRLYVNR-EDGFI-----------GLN 549

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDI 602
           +++ + ++        D ++ L  DG   +L    +      G  I    +   + + + 
Sbjct: 550 WRQHEYVQD---CTILDSVVCLMRDG---SLKVSKVAEKVFMGRDIIHCAVFPKDGDPNF 603

Query: 603 VTAFVYDSTCKLLVVSSK--GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            T    D             G     +   ++ +      +L++S  EK           
Sbjct: 604 YTMVYQDKESGKAFAKRFQIGGLSRDKLYSLVKSEGSRVVYLEISKTEKEMPKKL----R 659

Query: 661 VAVVGENRKLLI---FSIDQIPEMSR-GKG 686
           + + G +   +    F +D++P  SR  KG
Sbjct: 660 IFIDGRSGARVREFDFELDRVPVSSRSAKG 689


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 143/570 (25%), Positives = 241/570 (42%), Gaps = 64/570 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L       +L YA   I ERA+P ++DG KPV RRI+HAM  +       + K A IVG+
Sbjct: 54  LTGMYRNWFLDYASYVILERAVPHVQDGLKPVQRRILHAMKAVD---DGRYNKVANIVGQ 110

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 111 TMQ-YHPHGDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAAGRYIEARLSKFA 165

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   ++   ++  +Y+  + EPV  P KFP LLA G  GIAVG+A+ I  HN  E+ 
Sbjct: 166 LDVVF--NKKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASKILPHNFIELI 223

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            AA+A +           ++++ PDFPT G+I  SR      Y  G  G  V+ R  + +
Sbjct: 224 NAAIAHLQGR--------DFVLYPDFPTAGMIDVSR------YNDGLRGGTVKVRARISK 269

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + +TEIPY      + + I +     +I  +  + D +AE V I++       
Sbjct: 270 ID--KRTLAITEIPYTTTTESIKDSIVKANEKGKIK-IRKVDDNTAEKVEIIVQVAP-DE 325

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  IL+    H RE+L      R+
Sbjct: 326 SSDKTIDALYAFTDCEVSIAPNACVICDDKPH-FLGVSEILRRSAEHTRELLKMELEIRL 384

Query: 381 QAIDRRVE-----------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             ++                L  L+      +E  A +    +P   ++ R   TE+ + 
Sbjct: 385 NELNEAWHAASLERIFIVNKLYQLIEGCKTREEAYAAVGKGLEPFTKVLRRAVTTED-IQ 443

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +  L+   + + +  +  +E+  +  +  +    L             I   + I  K 
Sbjct: 444 RLTELKFIRISRYDSDKADNEIRQIEEDIAQTQHHLAHLTDYT------IAYYERIRDKY 497

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                RRT   E                E   V ++N             +     K+ +
Sbjct: 498 GKGRERRTELREFDSI------------EATKVAVTNAKLYVDRVEGFFGI-GKSMKDSE 544

Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            +         D +++ + DG+       +
Sbjct: 545 FVCD---CSDIDDVIVFTKDGRYVITKVSD 571


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+E+I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 143/591 (24%), Positives = 265/591 (44%), Gaps = 69/591 (11%)

Query: 3   VDNISNSNTLVEE--NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           +D I++  T  E+  N   V +    ++ +L YA   I ERA+P + DG KPV RRI+H+
Sbjct: 1   MDEITD-QTFPEDASNDSLVKVTGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRILHS 59

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GN
Sbjct: 60  MKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQVGQKEL----LIDMQGNWGN 111

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GDSAAA RY EAR+++ A  ++        D++ +Y+    EP+  P KFP LLA G
Sbjct: 112 ILTGDSAAASRYIEARLSKFALEVVF--SPKVTDWQLSYDGRKKEPIHLPVKFPLLLAQG 169

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG++T I  HN  E+ +A++  +   +I +         PDF TGG+I       
Sbjct: 170 AEGIAVGLSTKILPHNFNELLQASIQHLKGKKIDVY--------PDFQTGGVID------ 215

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           V++Y  G  G +VR R  + +  +    +V+ EIP+    S LI+ I +    K    ++
Sbjct: 216 VQNYNEGLRGGKVRVRAKITQQDKN--TLVINEIPFSTNTSSLIDSILKA-NEKGKIKIK 272

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +A +V I++   N  + PD ++++++  +  ET       ++   +    M ++ 
Sbjct: 273 KIEDNTASEVEILVHLPN-DISPDKMIDALYAFTACETSISPLGCLIIDNKPH-FMGVNE 330

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIR 408
           +LK    H  ++L      ++  ++ +        I   N            +E+IA I 
Sbjct: 331 MLKISTDHTVQLLKLELDVQLLELENQWHYASLERIFIENKIYRDIEEASTWEEVIAFID 390

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              KP    + R ++ E  +  +  +R++ + K +  + + +++ L  +  ++    N+ 
Sbjct: 391 KGLKPHIEHLKR-AVVEEDIVRLTEIRIKRISKFDLDKAQQKIEALEGDIAEVK---NNL 446

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
               +      + +++ +    +       F +V         Q +             G
Sbjct: 447 AHLIDYAIRYFKHLRKTYGTDKERKSEIRIFDDVDAKKVVVRNQRLYMNRE-------EG 499

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +I               ++ + +         D I++ + +GK   +   +
Sbjct: 500 FI-----------GTSLRKDEFVCD---CSDIDDIIVFTQEGKMQVVKVDS 536


>gi|213619192|ref|ZP_03373018.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 318

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 109/304 (35%), Gaps = 26/304 (8%)

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S  +    I  E+  +++ F        RRT   E++        + +I +E + V +S
Sbjct: 2   GSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQEDVVVTLS 53

Query: 526 NRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
           ++G+++          +      SA   KE D +   L A+T D IL  S+ G+ Y +  
Sbjct: 54  HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 113

Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632
             L        G  I  L+ L  N+ I        Y+    + + ++ G       +E  
Sbjct: 114 YQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFS 173

Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690
                G   + ++  +++  V   +G D V +     K++ F  D +  M R   GVR  
Sbjct: 174 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGI 233

Query: 691 SYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749
                G   V+   I  G    +      Y +           R   G +  K   R+G 
Sbjct: 234 KL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGS 291

Query: 750 FLSS 753
            + +
Sbjct: 292 VVGA 295


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 166/756 (21%), Positives = 312/756 (41%), Gaps = 98/756 (12%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N++  +  N + + +    E  +L YA   I +RA+P + DG KPV RRI+H++ EM   
Sbjct: 13  NNDEALSHN-QTIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD-- 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               F K+A ++G    K HPHGD S+ D++V++ Q  +    LI  QGN+G+   GDSA
Sbjct: 70  -DGRFNKAANVIGN-TMKYHPHGDASIGDAMVQIGQKNL----LIDCQGNWGDPTTGDSA 123

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY E R+++ A  ++   + D  +++ +Y+  + EPV  P KFP LLA G  GIAVG
Sbjct: 124 AAPRYIEGRLSKFANDVVF--NPDTTEWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVG 181

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           +AT I  HN  E+ + ++ ++     +        + PDFPTGG+        V +Y  G
Sbjct: 182 LATKIMPHNFVELLDGSIEVLRGGRPN--------LVPDFPTGGLAD------VSAYNEG 227

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +V+ R  +EE  R    + +TEIPY      LI+ +      K    ++ I D +A
Sbjct: 228 MRGGKVKVRARIEE--RDKKTLAITEIPYGTTTGGLIDSVIAA-NDKGKIKIKKIEDNTA 284

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             V IV+      + PD+ +++++  +D E     N  V+   +    M ++ +L E   
Sbjct: 285 ATVEIVVHLAP-GISPDVTIDALYAFTDCEVSISPNTCVIRDDKPH-FMSVNDVLIENTK 342

Query: 367 HRREVLFRRSSFRMQAIDR--------RVEILKGLLI-----AYLNIDEIIAIIRNEDKP 413
           H + +L +    R+  +          ++ I +G+          N + ++ ++     P
Sbjct: 343 HTKGLLKQELEIRLNELLEKIFFSSLLKIFIQEGMYKHPDYENAGNFEIVVDVLNRLFTP 402

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                 R  L E+    +++  + S+ + +  +   ++  L  E +++     + K   +
Sbjct: 403 FFDRFYREILPED-YKKLIDKPMSSITRFDVKKADEQMKALEDEIKEVKY---NLKHLTD 458

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
                 +++K+ + K    GR R T   +    +A+                    ++  
Sbjct: 459 YAIAWFQKLKDKYGK----GRERRTEIRIFEKVEASQVALAN--------------VKLY 500

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQL 592
            + +        K+ + +         D I+    +G          +  G+     I +
Sbjct: 501 VNRADGFVGTGLKKDEYVGD---CSDIDDIITFLENGTCLVTKVQDKVFVGKDI---IHV 554

Query: 593 LIDLNHNQDIVTAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRKGKTF---LKVSS 646
            +    ++  V   +Y         +   S       +E ++   ++  K        + 
Sbjct: 555 GVFKKGDERTVYNMIYRDAKTGISYVKRFSILGVTRDKEYDLTKGSKGSKVLYFTANPNG 614

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KG-------VRLQSYKDGG 696
           E ++  V       +       + L F +D  +I    R  +G       ++    K  G
Sbjct: 615 EAEIVNVQLKPHSKL-------RKLQFDLDFAEIAIKGRASQGNIVSKYPIKKIILKSKG 667

Query: 697 ISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWL 730
           +S +   KI   E L  ++  GR     E D    +
Sbjct: 668 VSTLAGRKIWFDEVLNRLNVDGRGKYLGEFDGDDRI 703


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 139/186 (74%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLS 180

Query: 198 EICEAA 203
           E+ +  
Sbjct: 181 EVIDGC 186


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 102/513 (19%), Positives = 196/513 (38%), Gaps = 49/513 (9%)

Query: 260 EVGRGSWCIVVTEIPY---QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
           +       +V+TEIPY       ++ +  IAEL+ +K++  + DI ++S ++   ++   
Sbjct: 7   KRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRIVLEL 66

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D + +   ++  + +E  + +NM  +  G  P+ + L GILK +L  + E   R+ 
Sbjct: 67  RKDADVEKIRNILYKKTKLEDTYGVNMLAIVKG-RPETLNLRGILKNYLDFQYENNTRKY 125

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------------------P 415
              ++    + EI +GL+ A   ID IIA++R     K                      
Sbjct: 126 RVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSAIRFKTPELE 185

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               +   TE Q  AIL +RL  L  LE   ++ E    L + ++ + +L+        I
Sbjct: 186 KDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKILSDKGTMDQVI 245

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             ++  +K  F+        R T  E     +    ++ +E   +  V+   G+ R +  
Sbjct: 246 KEDLAAIKREFAYP------RRTLIE--DGKEVVYDESAVEVREVVFVMDRFGYSRIVDR 297

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLL 593
            + D +    +  +     +    TDRI L +  G  + +   ++  G  R  G  I  L
Sbjct: 298 STYDRNRETIENEN--THVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLRDKGTPIDNL 355

Query: 594 IDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
              +      T FV +++       L  +       V   E   N R      K+   + 
Sbjct: 356 CKFD-GTKEQTVFVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNR-MVAATKLQEGDS 413

Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707
           +  V        V +  +N   L F++D+I    +  +GVR      G   + +      
Sbjct: 414 LVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEALEQVYLLGAN 473

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
             + I    +  + +        G+R G G+ V
Sbjct: 474 TESVITYKEKQVHLNRL----KQGRRDGKGNKV 502


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 119/212 (56%), Positives = 160/212 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
            +  L L+DN + S+E+++++I GPDFPTGGI
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGI 214


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 147/627 (23%), Positives = 265/627 (42%), Gaps = 70/627 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFAL-EERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
           M  D++   +           L   L  + +L YA   I ERA+P + DG KPV RRI+H
Sbjct: 1   MTPDSLLPPSGPSHTGELHTKLVDELYGDWFLDYASYVILERAVPHINDGLKPVQRRILH 60

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M E+       + K A +VG    K HPHGD S+ D++V+L Q  +    LI  QGN+G
Sbjct: 61  SMRELE---DGRYNKVANVVGN-TMKYHPHGDASIGDAMVQLGQKEL----LIDTQGNWG 112

Query: 120 NI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           NI  GD AAA RY E+R+T+ A  ++        ++ ++Y+  + EPV  P KFP LLA 
Sbjct: 113 NILTGDGAAASRYIESRLTKFALDVVF--SPKVTEWANSYDGRNKEPVTLPVKFPLLLAQ 170

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G  GIAVG++  +  HN  E+C+A +A +            + + PDFP GGI+      
Sbjct: 171 GVEGIAVGLSCRVLPHNFNELCDACVAALRGE--------PFQLLPDFPQGGIMD----- 217

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
               Y  G+ G +VR R  +E V +    + +TEIP+      + E I       +I  +
Sbjct: 218 -AADYNDGQRGGKVRVRAKIETVPK-RNMVRITEIPFGTTAGSVQESIVAANEKGKIK-I 274

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           + + D +AE V I++   +   DPD  +++++  +D E    +N  V+   +    + + 
Sbjct: 275 QKVEDNTAEFVEILVHLPS-GTDPDQAIQALYAFTDCEVSISVNAVVIQDDKPN-FISVT 332

Query: 359 GILKEWLAHRREVLFRRSSFR------------MQAIDRRVEILKGLLIAYLNIDEIIAI 406
            ILK    + +++L +                 ++ I     I + +       D +I  
Sbjct: 333 EILKSNAEYAKQLLKQELEIELGELEEKWHFSSLEKIFIEKRIYRDIEECTTW-DGVIGA 391

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           I     P   ++ R  +TE+ +  +  ++++ + K   ++    +  L ++ +++   L 
Sbjct: 392 IWKGLTPYLGLLKR-EITEDDITKLTEIKIKRISKFNSFEADELIRGLESDIDQVQRYL- 449

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
             K            +K+ + K  +       F  V+ +D A   + +            
Sbjct: 450 --KGLTRYAISYFERIKKTYGKDRERRTVIAGFDRVAASDVAIANETLYLD--------- 498

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
                           L  +EG+ +       T D +L ++ +G    +           
Sbjct: 499 -------PKEGFAGYGLK-REGEPVS---KCSTMDEVLFITREGVMSVVKVA--PKFHVG 545

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK 613
              + L +    ++  V + +Y    +
Sbjct: 546 KNPVYLAV-FKRDEQAVYSLIYRDGKQ 571


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 151/194 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 114/194 (58%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 118/212 (55%), Positives = 160/212 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIV
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M+++
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
            +  L L+D+ + S+E+++++I GPDFPTGGI
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGI 214


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 158/684 (23%), Positives = 281/684 (41%), Gaps = 83/684 (12%)

Query: 12  LVEENVKAVS----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           + EEN         L    E+ +L YA   I ERA+P + DG KPV RR +HA+ EM   
Sbjct: 1   MSEENYDPAPQKELLDDMFEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHALKEMD-- 58

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               F K A ++G  +   HPHGD S+ D++V + Q  +    L+  QGN+G++  GDSA
Sbjct: 59  -DGRFNKVANVIGSTMQ-YHPHGDASIGDAIVNIGQKEL----LLDIQGNWGDVRTGDSA 112

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY E R+++    +L   +ED  +++ +Y+    EPV  P+KFP +L  G  GIAVG
Sbjct: 113 AAPRYIEVRLSKFGHEVLF--NEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGAEGIAVG 170

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T I  HN  E+CEA++  + N          +++ PDF TGG+I       V +Y  G
Sbjct: 171 LSTKILPHNFIELCEASIKYLKNE--------PFVLYPDFLTGGLID------VSNYNDG 216

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G +V+ R  + EV +    + +TEIP+      LIE I +   + +I  ++ + D +A
Sbjct: 217 ARGGKVKMRAKISEVDKK--TLKITEIPFSTTTGSLIESIIKANDSGKIK-IKKVEDNTA 273

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           ++V I++     +   D+ +++++  ++ E     N  V+   +    + +  ILK    
Sbjct: 274 KNVEIIIHLAPNT-STDITIDALYAFTNCEVSVSPNAVVIVDQKPH-FLGVSDILKNSTD 331

Query: 367 H-----RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE------IIAIIRNEDKPKP 415
                 RRE+  R+     + +   +E +      Y +I+E      +I  I    +P  
Sbjct: 332 QTLHLLRRELEIRKGELLEKILYSSLEKIFIENRIYRDIEECETFESVIETIDKGLEPYK 391

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               R    E+ +  +  +R++ + K + ++    +     E  +++  LN      N +
Sbjct: 392 KDFYREIGRED-IIRLTEIRIKRISKYDSFKADELMRKQQEELVEVNDHLN------NMV 444

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
              I   KE+  K      RRT   +      A           +    + + ++     
Sbjct: 445 RYTINFFKELIRKYGKGRERRTEIVQFGEVQAA-----------VVAANNQKLYV----D 489

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LL 593
                     K+    +  +     D I++   DGK   +    +      G+ I    +
Sbjct: 490 KENGFIGYGLKKD---EYVMDCSDIDDIIVFRADGKFSVVK---IQDKVFVGKNIIYCAV 543

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKM 650
              N  + I      D               +  + E        R    +   +   + 
Sbjct: 544 FRKNDERKIYNVIYLDGKSGRTFAKRFAVTGVTRDKEYDVTKGSPRSKVLYFSANENGEA 603

Query: 651 KLVVKVTGDHVAVVGENRKLLIFS 674
           ++V             N K  +F 
Sbjct: 604 EVVTV-----NLTASSNAKKKVFD 622


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETPSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            E+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 PELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 119/219 (54%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++AM E G  +     KS+RIVG+V+GK HPHGD S+YD+LVR+AQ +
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R PLI GQGNFG+ID D  AA RYTE+R+T+VA  +L+ +D++ VDF+D Y+  + EP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
            V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E + GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           FPTGGI++  R  I  +Y  GRG   +R R  +E  G  
Sbjct: 181 FPTGGIVL-GRSGIYSAYSTGRGSIVMRGRVEIERRGND 218


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 112/224 (50%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++ 
Sbjct: 180 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 115/194 (59%), Positives = 152/194 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEYIIGPDF 226
           SIE L+EYI GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 147/196 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA +D+ +IS
Sbjct: 181 EVINGCLAYVDDEDIS 196


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 143/573 (24%), Positives = 260/573 (45%), Gaps = 66/573 (11%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            + +    E  +L YA   I ERA+P + DG KPV RRI+HA++EM       F K A +
Sbjct: 18  KLPISGLYENWFLDYASYVILERAVPAIEDGLKPVQRRIMHALNEMD---DGRFNKVANV 74

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           VG  +   HPHGD S+YD++V + Q  +    L   QGN+G+I  GD AAA RY E R++
Sbjct: 75  VGSSMQ-YHPHGDASIYDAIVNIGQKEL----LFDTQGNWGDIRTGDGAAAARYIEVRLS 129

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           +  + ++   ++D  +++ +Y+    EP+  P KFP LL  G  GIAVG++T I  HN  
Sbjct: 130 RFGKDVVF--NDDTTEWQLSYDGRKREPITLPVKFPLLLTLGVEGIAVGLSTKILPHNFC 187

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           E+ EA++ ++   E++        I PDF TGG++       V +Y  G  G +VR R  
Sbjct: 188 ELIEASIGILQGKEVT--------IYPDFLTGGLVD------VSNYNDGHRGGKVRVRAK 233

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +EE  +    +V+ +IP+    + LIE I +   A +I  ++ + D +A DV I +    
Sbjct: 234 IEEEDKK--MLVIRDIPFGTTTTSLIESIIKANDAGKIK-IKKVVDNTAADVEIQVHLAP 290

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVL 372
             + PD+ M++++  ++ E     N  ++   +    + +  ILK          +RE+ 
Sbjct: 291 -GVSPDITMDALYAFTECEVSISPNACIIIAEKPH-FVGVTDILKYNTQQTVHLLQRELE 348

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTEN 426
            +R     + +   +E +      Y +I+E      +I  I    +P      R  +T++
Sbjct: 349 IKRLELLEKILYGSLEKIFIENRIYRDIEECETFEAVIRTIDKGLEPFKPQFYR-EITDD 407

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            + A+  +R++ + K + ++    +    A+  + +  L    +        I   +++ 
Sbjct: 408 DIVALTEIRIKRISKYDSFKADELMRKWEADLAETEDNLAHITRFA------IEYFRDLL 461

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K      RRT   E+   ++          + + V  +  G++               K
Sbjct: 462 KKYGKNRGRRT---EIRAFNQIAANIVAANNQKLYVNRAE-GFV-----------GYGLK 506

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +  +     D I++   DG+       +
Sbjct: 507 KD---EYVMDCSDIDDIIVFRGDGRCVVTKVQD 536


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 145/192 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 197 QEICEAALALID 208
            E+    LA ID
Sbjct: 188 TEVINGCLAYID 199


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 103/253 (40%), Positives = 166/253 (65%), Gaps = 3/253 (1%)

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G 
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGR 119

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
             VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  + 
Sbjct: 120 IVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 178

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++  ++
Sbjct: 179 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYINFQK 237

Query: 370 EVLFRRSSFRMQA 382
           +V+ RR+ F +  
Sbjct: 238 DVITRRTQFELNK 250


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 150/573 (26%), Positives = 255/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 39  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 95

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GDSAAA RY EAR+++ A
Sbjct: 96  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDSAAAPRYIEARLSKFA 150

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 151 LDVVF--NPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 208

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA+A +           ++ + PDF TGG I  SR      Y  G  G  VR R  + +
Sbjct: 209 DAAIAYLHGE--------DFQLYPDFQTGGSIDVSR------YNDGERGGVVRVRAKISK 254

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + ++EIPY    S LI+ I + I   +I + +   D++      +L      +
Sbjct: 255 IDNK--TLCISEIPYGKTTSSLIDSILKAIEKGKIKVRKV--DDNTAGKVEILVHLTPGV 310

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +LK+ + +     R+E+  +R
Sbjct: 311 SSDKTLDALYAFTDCEVNISPNCCVIDNKKPH-FLSVSKVLKKSVDNTLALLRKELEIQR 369

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  ++D     I     P      R  +T+ 
Sbjct: 370 DETLETLHFASLEKIFIEERIYKDKQFEQA-DSMDAACEHIDERLTPYYPQFVR-EVTKE 427

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ +++  + K  + +    +  L AE E+ID+ L              + +KE +
Sbjct: 428 DILRLMEIKMARILKFNKDKADEFIARLKAELEEIDNHLAH---ITEYTIDWYQRLKEKY 484

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K+     RRT   E+   D     +     E + +     G+I               K
Sbjct: 485 GKNFP---RRT---EIRNFDTIVATKVAEANEKLYINR-EEGFI-----------GTGLK 526

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +    +   +    D +++   DGK   +   +
Sbjct: 527 KD---EYVCNCSDIDDVIIFYKDGKYKIVRVSD 556


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 115/224 (51%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I    D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 149/196 (76%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ID+ +IS
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 155/704 (22%), Positives = 285/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+VK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DESVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +L++   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLRKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPKFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEVAEIDNHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +     G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +         D +++   DGK    P  +    +  G+ +  +     N
Sbjct: 512 --GTALKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD---KKFVGKNVLYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  V           +   +  +     E ++   T + +        + E ++  
Sbjct: 564 DKRTIYNVAYRDGKEGTTYVKRFAVTSVVRDREYDVTQGTPESRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       V       + +IF  D  ++    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 148/196 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ID+ +IS
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 149/196 (76%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ++N +IS
Sbjct: 181 EVINGCLAYVENEDIS 196


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 140/580 (24%), Positives = 250/580 (43%), Gaps = 69/580 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+VK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DESVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKITKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +LK+   +  ++L
Sbjct: 294 VHLAP-GTSSDRTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTISKVLKKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D     I     P      
Sbjct: 352 KQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDKRLTPYYPQFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAEIDNHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +     G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                 K+ + +         D +++   DGK    P  +
Sbjct: 512 --GTSLKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD 546


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 148/583 (25%), Positives = 257/583 (44%), Gaps = 68/583 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S    +E +  +S  +  +  +L YA   I ERA+P L DGFKPV RRI+H+M E+    
Sbjct: 11  SQGEPQETITRISGMY--QNWFLDYASYVILERAVPALEDGFKPVQRRIMHSMDELE--- 65

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG    K HPHGD S+ D++++L Q  +    LI  QG++GNI  GD AA
Sbjct: 66  DGRYNKVANIVGN-TMKYHPHGDASIGDAIIQLGQKEL----LIDTQGSWGNILTGDDAA 120

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  +L         ++ +Y+  + EPV  P KFP LLA G  GIAVG+
Sbjct: 121 APRYIEARLSKFALDVLF--SPKVTQWQKSYDGRNDEPVHLPVKFPLLLAQGAEGIAVGL 178

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T I  HN  E+ +A++  ++             + PDFPT GI+  +       Y  G 
Sbjct: 179 STKILPHNFNELIDASVLYLEGKPFE--------LYPDFPTAGIMDATG------YSDGM 224

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G R+R R  + +  R    +V+TEIP+    S LI+ I +     +I +L+   + +A 
Sbjct: 225 RGGRIRVRARIAQ--RDKSTLVITEIPFGTTTSSLIDSILKANEKGKIKVLKVDDNTAAN 282

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              +V  PK   + PD  +++++  +D ET       V+  G  P  + +  ILK+    
Sbjct: 283 VEILVHLPK--GISPDKTIDALYAFTDCETSVSPLCCVIE-GSRPLFIGVSDILKKSTDR 339

Query: 368 RREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLNIDEIIAI---IRNEDKPKPV 416
             E+L +    ++  ++++          I + + I + N  +  ++   +    +P   
Sbjct: 340 TVEILKKELEVKLDDLEQKWHNASLEKIFIREEMYIDFKNYSDKESLYAYLYKRFEPFAE 399

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            + R  +T+  ++ +  + +  + + + Y+ +  L  +     ++   L       N IA
Sbjct: 400 QLLRP-ITDEDLERLTQIPMIRITRYDTYKAEENLLKIEENIAEVKDHLA------NLIA 452

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             I   + +  K      R+T                 IE   + V       ++   + 
Sbjct: 453 FAIDYFRNLQKKYGKGKDRKTEIRPF----------DTIEATKVVVR-----NLKLYVNR 497

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                    K+ + +         D I++ + DGK        
Sbjct: 498 EEGFVGTSLKKDEYVAD---CSDIDDIIVFTADGKMIITKVTE 537


>gi|332664590|ref|YP_004447378.1| DNA topoisomerase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333404|gb|AEE50505.1| DNA topoisomerase (ATP-hydrolyzing) [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 872

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 135/591 (22%), Positives = 251/591 (42%), Gaps = 74/591 (12%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +  S T    N K + L+   ++ +L YA   I ERA+P + DG KPV RRI+HAM E  
Sbjct: 1   MDKSTTQNNGNPKLIHLQGMYQDYFLDYASYVILERAVPHIDDGLKPVQRRILHAMKE-- 58

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 + K A ++G +  + HPHGD ++ D+LV + Q  +     I  QGN+G++  G 
Sbjct: 59  -TDDGRYNKVANVIG-LTMQYHPHGDAAIGDALVNMGQKDLM----IDTQGNWGDVATGA 112

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AAA RY E R+T+ +  +L   +    +++ +Y+    EPV  P+KFP LLA GT GIA
Sbjct: 113 GAAAPRYIEGRLTKFSLEVLF--NPQTTEWQMSYDGRKREPVTLPAKFPLLLAAGTDGIA 170

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T I  HN  E+ +A++ ++ + ++         I PDF TG ++  S       Y 
Sbjct: 171 VGLSTKIMPHNFIELIKASIDILKDKKVQ--------IFPDFQTGAMVDVSD------YN 216

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+ G R++ R  +E++ +    + + E+PY V    LIE I +    K    ++ + D 
Sbjct: 217 GGKRGGRIKIRALIEKLDKD--LLAIKELPYGVTTESLIESIIKA-SEKGKIKIKKVVDL 273

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +++DV + +        PD+ +++++  +D E     N  V+   + P+ M ++ IL+  
Sbjct: 274 TSKDVEVQVELLP-GTSPDVTIDALYAFTDCEVSISPNACVIHNDK-PRFMTVEEILEHN 331

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEI------------------LKGLLIAYLNIDEIIAI 406
               R++L      ++  +  +  +                   +        ID  +  
Sbjct: 332 TFRTRDLLRTELEIKLSELLEKWHMASLEKIFIENRIYHQIEECESWEEVLTTIDRELRK 391

Query: 407 IRNEDKPKPVMVS-----RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                   P            + E  +  +  +R++ + K   ++    +  L  E +++
Sbjct: 392 YVATPIDNPAPNDQRLRLMRDIVEEDIVKLTEIRIKRISKYNTFKADEHIAALEEEMKQV 451

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
              L++           I   K +  K      RRT        +     + +     + 
Sbjct: 452 RHDLDNLTDYT------IAYYKRLLEKYGKGRERRTRIT---SFESIQATEVVANNAKLF 502

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
           V  +  G+I               K+ ++          D +++   DG+ 
Sbjct: 503 VNYAE-GFI-----------GFGLKKDENNVFVSECSDIDDVIVFRADGRF 541


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 149/376 (39%), Gaps = 56/376 (14%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           M+T F  NM  L+ G  P+ + L  +L+ ++  R EV+ RR+ F ++    R  +L GL 
Sbjct: 1   MQTSFGCNMVALN-GGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLA 59

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVS-----------------------------RFSLTE 425
           IA  NIDE+I +IR    P+                                   ++L+E
Sbjct: 60  IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL LRL  L  L   +I  EL+ +  E      +L+S  +    +  E+  V++ 
Sbjct: 120 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDE 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F        RRT   E+         + +I +E + V +S+ G+I+          +   
Sbjct: 180 FGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 231

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595
              S +  ++ D +      +T   +L  S+ G  Y      L  G     G+A+  ++ 
Sbjct: 232 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 291

Query: 596 LNHNQDIVTAFVYDSTC------KLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEE 648
           L   + I T               ++  +++G     + S+ +   R GK  +K+    +
Sbjct: 292 LAPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGD 351

Query: 649 KMKLVVKVTG-DHVAV 663
           ++  V   T  D V +
Sbjct: 352 EILSVETCTEHDDVLL 367


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 155/704 (22%), Positives = 285/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+VK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DESVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLHGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +L++   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLRKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPKFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIARMKEEVAEIDNHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +     G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +         D +++   DGK    P  +    +  G+ +  +     N
Sbjct: 512 --GTALKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD---KKFVGKNVLYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  V           +   +  +     E ++   T + +        + E ++  
Sbjct: 564 DKRTIYNVAYRDGKEGTTYVKRFAVTSVVRDREYDVTQGTPESRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       V       + +IF  D  ++    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 114/224 (50%), Positives = 162/224 (72%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R    ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGXRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 159/704 (22%), Positives = 283/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +            + + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGES--------FQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +LK+   +   +L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLKKSADNTLGLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I +   P      
Sbjct: 352 KQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID  L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + SK      RRT   E+   D     + +   E + +   + G+I         
Sbjct: 465 NWYQMLKSKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-DEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +    +    D +++   DGK    P  +    +  G+ I  +     N
Sbjct: 512 --GTALKKDEFV---ANCSDIDDVIVFFRDGKYIVTPVAD---KKFVGKNILYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  +T          +   +        E ++   T   +        + E ++  
Sbjct: 564 DKRTIYNITYRDGKEGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           V       V       + +IF     +I    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 157/704 (22%), Positives = 282/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A++  +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASINYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNK--TLAITEIPYGKTTSSVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +LK+   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLKKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D     I     P      
Sbjct: 352 KQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDERLTPFYPSFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  +  +ID  L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIARMKEDIAEIDDHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +     G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +    +    D +++   DGK    P  +    +  G+ I  +     N
Sbjct: 512 --GTALKKDEFV---ANCSDIDDVIVFFRDGKYIVTPVAD---KKFVGKNILYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  VT          +   +  +     E ++   T   +        + E ++  
Sbjct: 564 DKRTIYNVTYRDGKEGTTYIKRFAVTSVVRDREYDVTQGTPDSRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           V       V       + +IF     +I    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 158/704 (22%), Positives = 283/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  I+   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDIVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +            + + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGES--------FQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKLDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +LK+   +   +L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLKKSADNTLGLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I +   P      
Sbjct: 352 KQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID  L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +   + G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-DEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +    +    D +++   DGK    P  +    +  G+ I  +     N
Sbjct: 512 --GTALKKDEFV---ANCSDIDDVIVFFRDGKYIVTPVAD---KKFVGKNILYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  +T          +   +        E ++   T   +        + E ++  
Sbjct: 564 DKRTIYNITYRDGKEGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
           V       V       + +IF     +I    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFERDFSEISIKGRQAQGVILTRLP 660


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/587 (25%), Positives = 261/587 (44%), Gaps = 66/587 (11%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N+S+     +       +    E  +L YA   I ERA+P L DGFKPV RRI+H+M E+
Sbjct: 10  NLSSETPQGDSQETITRISGMYETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMDEL 69

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DG 123
                  + K A IVG    K HPHGD S+ D++++L Q    +  LI  QG++GNI  G
Sbjct: 70  E---DGRYNKVANIVGN-TMKYHPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNILTG 121

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RY EAR+++ A  +L        +++ +Y+  + EPV  P KFP LLA G  GI
Sbjct: 122 DDAAAPRYIEARLSKFALDVLF--SPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAEGI 179

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG++T I  HN  E+ +A++  ++             + PDFPT GI+         +Y
Sbjct: 180 AVGLSTKILPHNFNELIDASVLYLEGKPFE--------LYPDFPTAGIMD------AATY 225

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             G  G R+R R  + +  R    +V+TEIP+    S LI+ I +     +I +L+ + D
Sbjct: 226 NDGMRGGRIRVRARIAQ--RDKATLVITEIPFGTTTSSLIDSILKANEKGKIKILK-VDD 282

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +A+DV I++    + + PD  +++++  +D E        V+   +    + +  IL++
Sbjct: 283 NTAKDVEILVHL-PKGISPDKTIDALYAFTDCELSISPLCCVIEDNKPH-FIGVSDILRK 340

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVE--------ILKGL---LIAYLNIDEIIAIIRNEDK 412
                 E+L +    ++  ++++          I + +      Y + + + A +    +
Sbjct: 341 STDRTVEILKKELEVKLDDLEQKWHNASLEKIFIREEMYIDFKKYNDKESLFAYLYERFE 400

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P    + R  +T+  +D +  + +  + + + Y+ +  L  + A+ E + + L       
Sbjct: 401 PFKEQLLRP-ITDEDIDRLTQIPMIRITRYDTYKAEENLLKIEADIEVVKNHLA------ 453

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
           N I+  I   + +  K      R+T                 IE   + V       ++ 
Sbjct: 454 NLISFTIDYFRNLQKKYGKGKERKTQIRPF----------DTIEATKVVVR-----NLKL 498

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +          K+ + +         D I++ + DGK        
Sbjct: 499 YVNREEGFVGTSLKKDEYVAD---CSDIDDIIVFTADGKMIITKVTE 542


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 151/259 (58%), Gaps = 9/259 (3%)

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+RDE
Sbjct: 1   SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 60

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S      ++    R  + ++++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +
Sbjct: 61  SDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHY 119

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421
           L H++ V+ RR+++ ++  + R  IL+GL +A  ++D +I++IRN       +  ++ +F
Sbjct: 120 LDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQF 179

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           SLTE Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L +  +    I  E+ E
Sbjct: 180 SLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTE 239

Query: 482 VKEIFSKSTDLGRRRTTFC 500
           +KE F+       RRT   
Sbjct: 240 IKERFNDE-----RRTEIV 253


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 109/224 (48%), Positives = 161/224 (71%), Gaps = 1/224 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP+V  ++FPNLL NG +GIAVGMAT+IP H + EI +  LA+  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           E+++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIM-GRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           TEIPYQV K++LIEKIA+L+  K+I  + D+RDES  +   ++ 
Sbjct: 180 TEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 148/196 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNIT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA ID+ +IS
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 168/731 (22%), Positives = 305/731 (41%), Gaps = 82/731 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  +L YA   I ERA+P + DG KPV RRI+HAM EM       + K A I+G
Sbjct: 17  PIGDMYQSWFLDYASYVILERAVPAIEDGLKPVQRRILHAMKEMD---DGRYNKVANIIG 73

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           + +   HPHGD S+ ++++ L Q  +    LI  QGN+G+I  GDSAAA RY EAR + +
Sbjct: 74  QTMQ-YHPHGDASIAEAIINLGQKEL----LIDMQGNWGDIRTGDSAAAARYIEARPSSL 128

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  IL         ++ +Y+    EPV FP KFP LLA G  GIAVG+AT I  HN  E+
Sbjct: 129 AHAIL--YSPQITSWQLSYDGRKKEPVTFPIKFPLLLAQGAEGIAVGLATKILPHNFCEL 186

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            E A+A++     +        + PDFPTGG++  S      +Y  G+ G R+R R  +E
Sbjct: 187 IEGAIAVLQGKTTN--------LLPDFPTGGLVDCS------AYNEGKRGGRIRLRARIE 232

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            + +    + + EIPY    + LIE I       +I  ++ + D +AEDV I++      
Sbjct: 233 ILDKK--TLAIREIPYGTTTNSLIESIIRAYERGKIK-IKQVIDNTAEDVEILVHLAP-G 288

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             PD++++++++ +D E     N  V+     P  + ++ +L+      +++L +  + +
Sbjct: 289 QSPDVVLDALYVFTDCEIGISPNTCVI-KDEKPTFIGVNELLEYNTYRTKDILQQELTLQ 347

Query: 380 MQAIDRR-----VEILKGLLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQV 428
            + +  +     +E L      Y +I+E      ++  I    +P      R  + E+ +
Sbjct: 348 HKNLQEKILFASLEKLFIEKRIYRDIEESETWEQVLLTIDQGLEPYKKQFYRAII-EDDL 406

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             +  ++++ + K +  + +  L  L  E  +++  L             I+  K +  K
Sbjct: 407 VRLTEIKIKRISKYDSQKAEDALLVLEKELAEVEHHLQHLTTFT------IQYFKNLLKK 460

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                 R+T   E+   D       +   + + +    +G+I               K+ 
Sbjct: 461 YGAGKERKT---EIRTFDTIEAHAVVANNQKLYINR-KQGFI-----------GYGLKKD 505

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
              ++       D +++   DGK   +     +  G+     I   +   +++  V   +
Sbjct: 506 ---ELIGDCSDLDDVIVFRKDGKCLVVKIAEKVFVGKDI---IHAAVYKKNDERRVYNLI 559

Query: 608 YDSTCKLLVVSS--KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           Y      +  +   +    I ++   +     G   L ++        V        ++ 
Sbjct: 560 YIDGKTGIARAKRFQMLGIIRDKEYDVTIGSTGSRILYLTDNPNGNAEVVT-----VILS 614

Query: 666 EN----RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
            N     K++ F    +    R  +G  L  Y    I   +  +   G   +        
Sbjct: 615 PNSPARNKVIDFDFASLQIKGRNSQGNILTKYTIKKIQLKVAGQSTLGALEVWYDEHIGK 674

Query: 721 RSENDLLGWLG 731
            +  +   WLG
Sbjct: 675 LNTENRGKWLG 685


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 114/214 (53%), Positives = 161/214 (75%), Gaps = 1/214 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
             G   I++TEIPYQV K+RLIEKIA+L+  K+I
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKI 213


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/194 (55%), Positives = 146/194 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ A++E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N + +I++L+ YI
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 147/194 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N + +I++L+ YI
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 147/584 (25%), Positives = 260/584 (44%), Gaps = 68/584 (11%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           SN+++  EE +  V      +E +L YA   I ERA+P L DG KPV RRI+H+M ++  
Sbjct: 19  SNTDSPQEETITKV--TGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKDLD- 75

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD 
Sbjct: 76  --DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKEL----LIDMQGNWGNILTGDR 128

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P KFP LLA G  GIAV
Sbjct: 129 AAASRYIEARLSKFALDVVF--NPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGAEGIAV 186

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T I  HN  E+ +A++  +            + + PDF TGGI   +       Y  
Sbjct: 187 GLSTKILPHNFNELIDASIKYLKGRS--------FKLVPDFLTGGIADFTN------YND 232

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G+ G +VR R  + ++ +    +V+TEIP+    S LI+ I +    K    ++ I D +
Sbjct: 233 GKRGGKVRIRAKISQLDKK--TLVITEIPFSTTTSSLIDSILKA-NDKGKIKIKKIEDNT 289

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A +V I++     ++ PD  +++++  ++ ET        +     P    +  +LK   
Sbjct: 290 AAEVEILVHLPP-NVSPDKSIDALYAFTNCETSISPLACTI-KDNTPVFTGVSDMLKHST 347

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE------IIAIIRNEDKPK 414
               E+L R    ++  ++ +               Y +I+E      +I  I    KP 
Sbjct: 348 DLTVELLKRELEIQLNELEEQWHFSSLERIFIENRIYRDIEEEETWEGVIEAIDKGLKPH 407

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R ++T + +  +  +R++ + K +  + K  +++L  +   +   L +       
Sbjct: 408 IKHLKR-AITVDDITRLTEIRIKKISKFDIDKAKQFIESLEEKIAGVKHHLAN---LIEF 463

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
                + +K+ + K    G+ R T  E+   D     +  +    + V  +  G+I    
Sbjct: 464 AIAYFKRLKDTYGK----GKERKT--EIRIFDDIVASKVAMNNAKLYVNRAE-GFI---- 512

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
                      K  + +         D I++   DG        
Sbjct: 513 -------GTSLKRDEFVTD---CSDIDDIIVFRKDGVMLVTKVD 546


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 164/694 (23%), Positives = 287/694 (41%), Gaps = 85/694 (12%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +   L  +    +L YA   I +RA+P + DG KPV RR++H + +M       F K A 
Sbjct: 68  EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVAN 124

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
           +VG    KLHPHGD S+  +LV + Q    R  LI  QGN+GN + GD+AAA RY EAR+
Sbjct: 125 VVGA-TMKLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           T  A  +L   +     ++ +Y+    EPV  P+KFP +L  G  GIAVG++T I  HN 
Sbjct: 180 TPFARDVLF--NPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++C AA+  +            + I PDFPTGG            Y  G  G +V+ R 
Sbjct: 238 NDLCRAAINHLQGKT--------FRILPDFPTGGT------GDFTDYNDGERGGKVKVRA 283

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +EE  +    + +TE+PY V    LIE I       +I  ++ + D +A  V I++   
Sbjct: 284 RIEEHSKS--VLCITELPYGVTTESLIESILAANAKGKIK-IKHVDDNTASKVEILVHLP 340

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-----VPQVMPLDGILKEWLAHRREV 371
             S  PD +++ +++ +  + +      V+          PQ M +  ILK  +   +E+
Sbjct: 341 PGS-QPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKEL 399

Query: 372 LFRRSSFRMQAIDRRVEIL-----------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L +    ++  ++++                  +      + ++  IR   KP  +   R
Sbjct: 400 LKQELEIKLGELEQQWHWDSLERIFIEERIYRRIEKSQTWESVLEEIRTGLKPF-IGNLR 458

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             +TE  +  +  +R++ +     +Q    L  +    ++    L       N +A  + 
Sbjct: 459 REVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKETKHHL------KNLVAYAVD 512

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
             + +  K     +RRTT+ E+++ D +             V  + R ++    +     
Sbjct: 513 WFERLQEKYGKGVKRRTTYDEIAQIDASA-----------VVSANQRLYV----NREDGF 557

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI--QLLIDLNH 598
             L++++ + +         D +L +  DG   +L    +      G  I    L   + 
Sbjct: 558 IGLNWRQHEFVT---ECSILDSVLTIMRDG---SLKVTKVADKVFMGRKIIHIGLWPKDG 611

Query: 599 NQDIVTAFVYDSTCKLLVVSSK--GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656
           + +  T    D             G     +   ++ +      FL +S  E+       
Sbjct: 612 DMNFYTMVYQDGETGKAFAKKFQIGGLSRDKLYSLVKSEDSKIIFLHISPSEQAMPKTL- 670

Query: 657 TGDHVAVVGENRKLLI---FSIDQIPEMSRG-KG 686
              HV+V G +   +    F +  +P  +R  KG
Sbjct: 671 ---HVSVDGRSGARVRELDFDLTALPVSTRTSKG 701


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 109/196 (55%), Positives = 149/196 (76%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR
Sbjct: 1   TRVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 198 EICEAALALIDNPEIS 213
           E+    LA +DN +IS
Sbjct: 181 EVINGCLAYVDNEDIS 196


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 154/704 (21%), Positives = 285/704 (40%), Gaps = 89/704 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +E+VK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DESVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLHGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  V+   +    + +  +L++   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLRKSADNTLDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPKFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L         +   +
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIARMKEEVAEIDNHLAH------IVDYTV 464

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
              + + +K      RRT   E+   D     + +   E + +     G+I         
Sbjct: 465 NWYQMLKNKYGKNFPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599
                 K+ + +         D +++   DGK    P  +    +  G+ +  +     N
Sbjct: 512 --GTALKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD---KKFVGKNVLYVNVFKKN 563

Query: 600 QD----IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKL 652
                  +           +   +  +     E ++   T + +        + E ++  
Sbjct: 564 DKRTIYNIAYRDGKEGTTYVKRFAVTSVVRDREYDVTLGTPESRITYFSANPNGEAEIIK 623

Query: 653 VVKVTGDHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYK 693
           V       V       + +IF  D  ++    R  +GV L    
Sbjct: 624 VTLKPNPRV-------RRIIFEHDFSEVSIKGRQARGVILTRLP 660


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 249/580 (42%), Gaps = 69/580 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  ++   +    + +  +LK+   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPH-FLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L       +      
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAEIDNHLAH---IVDYTVNWY 467

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + +K  + K+           E+   D     + +   E + +     G+I         
Sbjct: 468 QMLKNKYGKNFP------RHTELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                 K+ + +         D +++   DGK    P  +
Sbjct: 512 --GTTLKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD 546


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 154/573 (26%), Positives = 257/573 (44%), Gaps = 56/573 (9%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           V+EN+  + L    E  +L YA   I ERA+P L DGFKPV RRI+H+M E+       +
Sbjct: 39  VDENI--IPLSGLYENWFLDYASYVILERAVPSLHDGFKPVQRRILHSMKELD---DGRY 93

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRY 131
            K A ++G    K HPHGD S+ D+LV+L Q  +    LI  QGN+GN + GD AAA RY
Sbjct: 94  NKVANVIGN-TMKYHPHGDASIGDALVQLGQKEL----LIDCQGNWGNTLTGDGAAAPRY 148

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
            EAR+++ A  ++   +     +  +Y+  + EP   P KFP LLA G  GIAVGMA  I
Sbjct: 149 IEARLSKFASHVVF--NPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGAEGIAVGMACKI 206

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
             HN  E+ + ++  +   +I         I PDF  GG+   +       Y  G  G +
Sbjct: 207 LPHNFIELIDQSINHLRGKKIE--------IFPDFLNGGMADFTN------YNDGLRGGK 252

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VR R  +++V      +++ EIP+    + LIE + +    K    ++ I D +A D  I
Sbjct: 253 VRVRAKIKKVDNK--TLIINEIPFGCTTTSLIESVIKA-NDKGKIKIKKIEDNTAADAEI 309

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+      + PD  +++++  +D E     N +V+  G  P+ M +  ILK    +   +
Sbjct: 310 VIHLAP-GVSPDKTIDALYAFTDCEVSISPNASVI-DGDTPRFMGVTEILKVNTDNTVTL 367

Query: 372 LFRRSSFRMQAIDRRVE---ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ- 427
           L +    R+  ++ +     + K  +   + ID    +  +++     M  RF   + Q 
Sbjct: 368 LRKELEIRLAELESQWHFSTLEKIFIREEMYID--FKLYSDKEGLYQYMYKRFEKFKKQF 425

Query: 428 VDAILNLRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           V  I++  L+ L ++   +I + + D       K+++ +   K+    +     E  +  
Sbjct: 426 VREIIDEDLQRLTQIPMIRITRFDSDKADDLIAKLEAEMEEVKKHLGNLIEYAIEYYKDL 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K    G+ R T  E+   D     + +I    + V I   G+I               K
Sbjct: 486 KKRFGAGKERRT--EMKVFDNIAASKVIIANRKLYVDI-EEGFIGW-----------GLK 531

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + +++         D I++    GK        
Sbjct: 532 KTEAVND---CSEIDDIIVFFDTGKFIVTKVSE 561


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 111/193 (57%), Positives = 149/193 (77%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ 
Sbjct: 61  SAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    L  ID+ +
Sbjct: 121 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDED 180

Query: 212 ISIEKLLEYIIGP 224
           ISIE L+E+I GP
Sbjct: 181 ISIEGLMEHIPGP 193


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 249/580 (42%), Gaps = 69/580 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  ++   +    + +  +LK+   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPH-FLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L       +      
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAEIDNHLAH---IVDYTVNWY 467

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + +K  + K+           E+   D     + +   E + +     G+I         
Sbjct: 468 QMLKNKYGKNFP------RHTELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                 K+ + +         D +++   DGK    P  +
Sbjct: 512 --GTTLKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD 546


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 248/573 (43%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    ++ +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 114

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 115 TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+ 
Sbjct: 170 --LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  S+      Y  G  G  V+ R  + +
Sbjct: 228 DASVAYLRGE--------EFTLYPDFQTGGYIDVSK------YNDGERGGSVKVRAKITK 273

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V++EIPY    S LIE I +     +I  ++ + D +A +V I++      +
Sbjct: 274 LDNK--TLVISEIPYGKTTSTLIESILKANDKGKIK-IKKVDDNTARNVEILVHLAP-GV 329

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +LK          R E+  ++
Sbjct: 330 SSDKTIDALYAFTDCEISISPNCCVIMDNKPH-FLTVSDVLKHSTDDTLHLLRTELEIQK 388

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  ++DE IA I            R  +T  
Sbjct: 389 GELEESLFFASLEKIFIEERIYKDKEFEEA-KDMDEAIAHIDRRLDLFKPHFIR-EVTRE 446

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ +++  + K    +  + +     +  KID  L       +  A     +KE +
Sbjct: 447 DILKLMEIKMGRILKFNTDKCNATIAQYKEDIAKIDDHLAH---IVDYTADWFMMLKEKY 503

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K+           EV   D     + +   E + +  +  G+I               K
Sbjct: 504 GKNYP------RMTEVRNFDTIEATKVVEANEKLYINRAE-GFI-----------GTGLK 545

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I+L   +G    +    
Sbjct: 546 KDEFV---CNCSDIDDIILFYRNGTYKVVKVSE 575


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 154/691 (22%), Positives = 277/691 (40%), Gaps = 88/691 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG  +   
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-F 58

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  I+ 
Sbjct: 59  HPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIVF 114

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I  HN  E+C+A+++
Sbjct: 115 --NPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +            + + PDF TGG I  ++      Y  G  G  V+ R  + ++    
Sbjct: 173 YLHGES--------FQLYPDFQTGGSIDVAK------YNDGERGGAVKVRAKINKLDNK- 217

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TEIPY    S +I+ I + +   +I  +  + D +A +V I++         D  
Sbjct: 218 -TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEILVHLAP-GTSSDKT 274

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+   +    + +  +LK+   +   +L +    +   I  
Sbjct: 275 IDALYAFTDCEVSISPNCCVIDDSKPH-FLTVSKVLKKSADNTLGLLKQELEIKKGEILE 333

Query: 386 RVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
            +                        ++D   A I +   P      R  +T+  +  ++
Sbjct: 334 SLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDDRLTPFYPSFIR-EVTKEDILKLM 392

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +++  + K    +    +  +  E  +ID  L         +   +   + + SK    
Sbjct: 393 EIKMGRILKFNTDKADELIARMKEEIAEIDDHLAH------IVDYTVNWYQMLKSKYGKN 446

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT   E+   D     + +   E + +   + G+I               K+ + + 
Sbjct: 447 FPRRT---ELRNFDTIEAAKVVEANEKLYINR-DEGFI-----------GTALKKDEFV- 490

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD----IVTAFVY 608
              +    D +++   DGK    P  +    +  G+ I  +     N       +T    
Sbjct: 491 --ANCSDIDDVIVFFRDGKYIVTPVAD---KKFVGKNILYVNVFKKNDKRTIYNITYRDG 545

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT---FLKVSSEEKMKLVVKVTGDHVAVVG 665
                 +   +        E ++   T   +        + E ++  V       V    
Sbjct: 546 KEGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRV---- 601

Query: 666 ENRKLLIF--SIDQIPEMSR-GKGVRLQSYK 693
              + +IF     +I    R  +GV L    
Sbjct: 602 ---RRIIFERDFSEISIKGRQAQGVILTRLP 629


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 141/587 (24%), Positives = 261/587 (44%), Gaps = 66/587 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D++ N ++  +E +K V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 6   DDLLNEDSGNQETIKKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 63

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 64  LD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILT 115

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P  FP LLA G  G
Sbjct: 116 GDRAAASRYIEARLSKFALDVV--YNPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEG 173

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ +A++  +     +        I PDFPT GI   +       
Sbjct: 174 IAVGLSTKILPHNFIELIDASVKHLKGKRFT--------ILPDFPTAGIADFTN------ 219

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G +VR R  + +  R    + +TEIP+    S LI+ I +    K    ++ I 
Sbjct: 220 YNDGLRGGKVRVRAKIAQ--RDKNTLAITEIPFATTTSSLIDSILKA-NDKGKIKIKKIE 276

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I++   +  L PD  +++++  ++ ET       V+   + P  + +  +L+
Sbjct: 277 DNTAAEVEILIHLPS-GLSPDKTIDALYAFTNCETSISPLGCVIEDNK-PFFVGVTEMLR 334

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLNIDEIIAIIRNEDK-- 412
               +  ++L +    ++  ++ +          I K +       +    +I+  DK  
Sbjct: 335 RSTDNTVQLLKQELEIKLSELEEQWHFASLERIFIEKRIYRDIEEEETWEGVIKAIDKGL 394

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              V   +  +TE+ +  +  +R++ + K +  + + ++D L  +  ++   L +     
Sbjct: 395 APHVKHLKRKVTEDDIVRLTEIRIKRISKFDIDKAQQKIDALEDQIAEVKHHLAN----- 449

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
             +        E   K    G+ R T   +     AT          + +  +     + 
Sbjct: 450 --LIDYAIAYFERLKKDYGEGKERKTEIRIFEDVDAT---------KVVIRNT-----KL 493

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +          +  + +         D I++ + +GK      G+
Sbjct: 494 YVNREEGFIGTSLRRDEYVCD---CSDIDDIIVFTKEGKMMVTKVGS 537


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 113/213 (53%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 114/213 (53%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NPEI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 254/573 (44%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+PD+ DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 60  LSGMYKNWFLDYASYVILERAVPDIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 116

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 117 TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGDRAAAPRYIEARLSKFA 171

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EPV  P KFP LLA G  GIAVG+++ +  HN  E+C
Sbjct: 172 --LETVFNPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELC 229

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G+ G  VR R  +E+
Sbjct: 230 DAAISYLRGK--------EFELYPDFPTGGAIDISK------YNDGQRGGTVRVRAKIEK 275

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ E+P+    + L E I   I   +I     I D +A DV I +   +  +
Sbjct: 276 LDSK--TLVIREVPFTKTAASLQESITRAIEKGKIKARRVI-DMTARDVEIQVQL-SPGI 331

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFRR 375
             D  +++++  +D E     N  V+   +    + +  +LK          R E+L R+
Sbjct: 332 SSDKTIDALYAFTDCEINISPNCCVIDGNKPA-FLTISDVLKHNADRTMGLLRTELLIRK 390

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                      ++   I+ R+   K    A  +   ++A + ++ +P    + R  + E+
Sbjct: 391 GELEEMLFFASLERIFIEERMYKEKKFEQA-PSQKAVLAFLDSKFEPFKKDLIR-EIRED 448

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
               +L ++++ + K  + +    +   +AE + ID  L       +      + +K  +
Sbjct: 449 DYLRLLEIKMQRILKYNKDKADQLMKKTMAEIKGIDHDLAH---MTDVTIAWYKHLKNTY 505

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K            E+   D       +   E + +     G++               K
Sbjct: 506 GKDYP------RLTEIRSFDTIDAATVVEANEKLYINR-QDGFV-----------GTGLK 547

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + +    +    D I++   DGK   +   +
Sbjct: 548 KHEFV---CNCSDLDDIIIFYRDGKYKVMKVAD 577


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 108/194 (55%), Positives = 145/194 (74%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQ F  RY L  GQGNFG++DGDSAAA RYTE RM +++  +L  +
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D++ VD+   Y+  +  P V P+K PNLL NG+SG AVGMAT+IP HN+ EI    LALI
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 208 DNPEISIEKLLEYI 221
           +N + +I++L+ YI
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 248/580 (42%), Gaps = 69/580 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +ENVK   L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 22  DENVKH-QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYN 77

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 78  KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 132

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  ++   +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 133 EARLSKFALDVVF--NPKTTKWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 190

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+A+++ +           E+ + PDF TGG I  ++      Y  G  G  V
Sbjct: 191 PHNFNELCDASISYLRGE--------EFQLYPDFQTGGSIDVAK------YNDGERGGAV 236

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      + +TEIPY    S +I+ I + +   +I  +  + D +A +V I+
Sbjct: 237 KVRAKINKIDNK--TLAITEIPYGKTTSTVIDSILKAVDKGKIK-IRKVDDNTAANVEIL 293

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +         D  +++++  +D E     N  ++   +    + +  +LK+   +  ++L
Sbjct: 294 VHLAP-GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPH-FLTVSKVLKKSADNTMDLL 351

Query: 373 FRRSSFRMQAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +   I   +                        ++D   A I     P      
Sbjct: 352 KQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTPYYPTFI 411

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  +T+  +  ++ +++  + K    +    +  +  E  +ID+ L       +      
Sbjct: 412 R-EVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAEIDNHLAH---IVDYTVNWY 467

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
           + +K  + K+           E+   D     + +   E + +     G+I         
Sbjct: 468 QMLKNKYGKNFP------RHTELRNFDTIEAAKVVEANEKLYINR-EEGFI--------- 511

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                 K+ + +         D +++   DGK    P  +
Sbjct: 512 --GTTLKKDEFV---ACCSDIDDVIIFFRDGKYIVTPVAD 546


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 145/617 (23%), Positives = 262/617 (42%), Gaps = 94/617 (15%)

Query: 2   GVDNISNSNTLVEENVKAVS---------LRFALEERYLAYALSTIKERAIPDLRDGFKP 52
             D+    +T    + K V+         L    +  +L YA   I ERA+P + DG KP
Sbjct: 31  AEDDNEEISTEKHSDYKPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKP 90

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI+H+M  M       + K A IVG  +   HPHGD S+ D+LV++ Q  +    LI
Sbjct: 91  VQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQKDL----LI 142

Query: 113 SGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
             QGN+GNI  GD AAA RY EAR+++ A  ++   +    D++ +Y+  + EP+  P+K
Sbjct: 143 DTQGNWGNILTGDRAAAPRYIEARLSKFALDVVF--NPKTTDWQLSYDGRNKEPITLPAK 200

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FP LLA G  GIAVG+++ +  HN  EIC+AA+  +            + + PDFPTGG 
Sbjct: 201 FPLLLAQGAEGIAVGLSSKVLPHNFNEICDAAVHYLKGE--------PFQLYPDFPTGGA 252

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           I  S+      Y  G+ G  ++ R  ++++      +V++EIP+      LI+ I + + 
Sbjct: 253 IDVSK------YNDGQRGGALKVRAKIDKLDNK--TLVISEIPFSKTTGSLIDSITKAVE 304

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             +I   +   D+       +L         D  M++++  SD E     N  V+   + 
Sbjct: 305 KGKIKARKV--DDVTSANVEILVHLAPGTSSDKTMDALYAFSDCEINISPNCCVIEDNK- 361

Query: 352 PQVMPLDGILKEWLAH-----RREVLFRRSSFRMQA---------IDRRVEILKGLLIAY 397
           P  + +  +L+  +       R+E++ R+     Q          I+ R+   +    + 
Sbjct: 362 PVFLTISDVLRHSVDRTMGLLRKELMIRKGELEEQLFFSSLERIFIEERIYKERKFEQSK 421

Query: 398 LNIDEIIAIIRNEDKPKP--------------VMVSRFSLTENQVDAILNLRLRSLRKLE 443
              DE++A I ++ +P                       +T   +  +L ++++ + K  
Sbjct: 422 SQ-DEVVAFIDSKLEPFKDKLFTAEVDGKGMVEYAFHREITREDILKLLEIKMQRILKYN 480

Query: 444 EYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + +     D LL +   ++  + N      +        +K  + K+      R T  E+
Sbjct: 481 KDK----ADELLMKIKAELAEIENDLAHMTDVTINWFEYLKGKYGKN----HPRKT--EI 530

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
              D   + + +   + + +     G++               K+ + +    +    D 
Sbjct: 531 RNFDTIEVTKVVEANQKLYINR-QEGFV-----------GTGLKKDEFV---CNCSDLDD 575

Query: 563 ILLLSTDGKAYTLPAGN 579
           I++   DGK       +
Sbjct: 576 IIIFYKDGKFKVTKVAD 592


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 96/193 (49%), Positives = 145/193 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ ++++ V+F+D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP HN+ E  
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 201 EAALALIDNPEIS 213
           +A   ++++P+ +
Sbjct: 181 DAVKMVMEHPDCT 193


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 135/327 (41%), Gaps = 30/327 (9%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           ++I E I +I ++          ++L++ Q  AIL LRL+ L ++   ++  EL  L A+
Sbjct: 8   MDIAEYIKLI-DDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDELQELAAK 66

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S ++    I  E+ EV++ F+       RRT   E++        + +IE+
Sbjct: 67  IRDYLDILSSRERILAIIEGELTEVRDQFAVP-----RRT---EIADWAGDLDDEDLIER 118

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +++ G+I+          K     LS++  K+ D +     A+T  ++L  +TD
Sbjct: 119 EDMVVTVTSGGYIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFTTD 178

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKG 621
           G  Y L    L   +    G+AI  ++ +     I      D         + +  +S G
Sbjct: 179 GMVYKLKCWRLPLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATSDG 238

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPE 680
           +      S+     R GK  +K+     +  V +    D V +V  + + + F    +  
Sbjct: 239 DVRRNALSDFTNVMRNGKIAMKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRV 298

Query: 681 -MSR-GKGVRLQSYKDGGISDVICFKI 705
              R   GVR    +  G   V+   I
Sbjct: 299 FKGRDSTGVRGIRLQ--GDDRVVSMDI 323



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 69/255 (27%), Gaps = 61/255 (23%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDR 562
             +      E   V  ++ G +R                A+   EG SL     A   D 
Sbjct: 219 VDRPDSEWDELQAVFATSDGDVRRNALSDFTNVMRNGKIAMKLPEGVSLVDVKIASEDDD 278

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-----FVYDSTCK---- 613
           +LL++  G+A      ++   +G        I L  +  +V+      F  D   +    
Sbjct: 279 VLLVTNSGRAIRFQTTDVRVFKGRDSTGVRGIRLQGDDRVVSMDIIKHFEADPAERAAYL 338

Query: 614 ---------------------------------------LLVVSSKGNAFIVEESEIIAN 634
                                                  +L ++  G   +    +    
Sbjct: 339 KMRRAIEGVLEEAETDEDEVEAGAITQERYAEMSAFENLILTITRSGAGKLSSSHDYPVR 398

Query: 635 TRKGKTFLKVSS---EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R G     + +      +     V   D V +V    + +   +  I   SRG  GVR+
Sbjct: 399 GRGGMGVRAMDAAMRGGDLVAAFPVEMDDQVMLVTSTGQSIRVPVKGISFRSRGAGGVRV 458

Query: 690 QSYKDGGISDVICFK 704
             +  G    V+   
Sbjct: 459 --FNTGTDEHVVSVA 471



 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 21/161 (13%)

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL---------QQAM 514
           L    +     I           +    + R      E +  D+  +            M
Sbjct: 312 LQGDDRVVSMDIIKHFEADPAERAAYLKMRRAIEGVLEEAETDEDEVEAGAITQERYAEM 371

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSA----------LHFKEGDSLKIALHAHTTDRIL 564
              E + + I+  G  +   SH   +               + GD L  A      D+++
Sbjct: 372 SAFENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRGGD-LVAAFPVEMDDQVM 430

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
           L+++ G++  +P   + S R  G     + +   ++ +V+ 
Sbjct: 431 LVTSTGQSIRVPVKGI-SFRSRGAGGVRVFNTGTDEHVVSV 470


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 171/690 (24%), Positives = 305/690 (44%), Gaps = 94/690 (13%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +++  ++ Y+ YA   I +RAIPD+ DG KPV RRI+H + ++         K A + G
Sbjct: 3   DIKYLYKDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYKI---HDGKLHKVANVAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           + +   HPHGD ++ D+LV +A     +   +  QGNFGNI  GD AAA RY E R++ +
Sbjct: 60  QTMA-YHPHGDAAIIDALVNMA----NKGFFLDCQGNFGNIYTGDPAAAARYIETRLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D  +   +Y+  + EPV  P+K P +L  G SGIAVGM+T+I  HN  E+
Sbjct: 115 AKDTLF--NPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A+++  +          I PDF TGGI+  S       Y  GRG  ++RA+  ++
Sbjct: 173 LQAEIAVLEGKDFE--------IYPDFITGGIMDVSE------YDKGRGRLKLRAKIDIQ 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +V++EI +      LI  I E     +I  ++ I D +A+ V I +    R 
Sbjct: 219 DPK----TLVISEICHGTTTESLIRSIDEAAKRGKIK-IDSINDYTADKVEIEI-KLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                L++S++  +D E        V+    +P    +D IL+      +  L +     
Sbjct: 273 HYAQDLIDSLYAYTDCEVSINCMCMVI-KDHLPWETTVDEILRLHAELLKGYLKKELELE 331

Query: 380 ----MQAI-DRRVEILKGLLIAYLNI------DEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               ++ I D+ +E +      Y ++      D++ + + +  KP    +SR   T++ +
Sbjct: 332 KDRLLEKIFDKTLEQIFIENRLYKHLETVKSSDKLRSTVADSLKPFHEQLSRVP-TKDDI 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R + K +  + + E+  L  E  +++  L S KQ        I+ +KE+ SK
Sbjct: 391 EKLLQIPIRRISKFDMDKNQEEIAGLRKELARVEKDLKSIKQFT------IKYLKELVSK 444

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             D+  RRT   E+   D    ++A+  KE    +    G++         +S     EG
Sbjct: 445 YRDIYTRRTRVGEIQELD----KRAIATKELKVGIDLKSGFV------GTKVSGSETIEG 494

Query: 549 DSLKIALHAHTTDRILLLSTDG--KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
                       D++L+L  DG  +   +P  + +          + + L   Q +    
Sbjct: 495 ---------TNFDKLLVLYQDGSYRVTNIPEKDYVHA---SNNKAVFVGLADKQTVFNVA 542

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRK-----GKTFLKVSSEE--KMKLVVKVTGD 659
             D    L         FI+++  +    R      G  +L    E   +++L+ K+   
Sbjct: 543 YKDPKSHLCFAKR----FIIKQFILDKEYRFFEEGMGLAYLSTEKEPILEVQLIPKIKQK 598

Query: 660 HVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688
               + +    + F    +       +GVR
Sbjct: 599 ----ISK----VSFPFSDVLIKGVSARGVR 620


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 140/573 (24%), Positives = 252/573 (43%), Gaps = 70/573 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  G SAAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDTQGNWGNILTGSSAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +    +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +           E+ + PDFPTGG I  S+      Y  G+ G  V+ R  +E+
Sbjct: 210 DAAVSCLRGE--------EFHVYPDFPTGGSIDVSK------YNDGQRGGTVKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  +V+ +IP+      LI+ I + +   +I  +  + D +A +V I++      +
Sbjct: 256 QDNK--TLVIKDIPFSKTSETLIDSITKAVEKNKIK-VRKVEDLTAANVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL-----FRR 375
             D  +++++  +D E     N  V+   + P+ + +  +L++       ++      RR
Sbjct: 312 SSDKTLDALYAFTDCEINISPNCCVIEDNK-PKFLTVSDVLRQSARQTMRLMKTELEIRR 370

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +          ++   I+ R+   +    A  ++D   + I  +  P      R  + + 
Sbjct: 371 NELMEQLFFSSLEKIFIEERIYKERRFEQA-ADMDAACSFIDEKLTPFYPQFVR-EVRKE 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  ++ ++++ + K  + +    +  +  E   ID  L +              +KE +
Sbjct: 429 DILRLMEIKMQRILKFNKDKADELIARIKEEVAGIDRDLQN---LVEITCNWFIYLKEKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R T  E+   +     +     E + +  +  G+I               K
Sbjct: 486 GSE----HPRLT--EIKNFETIEAVKVAEANEKLYINRA-DGFI-----------GTALK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             + +    +    D I++   DGK   +   +
Sbjct: 528 RDEFV---CNCSDIDDIIIFYRDGKYKVIRVAD 557


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 148/623 (23%), Positives = 268/623 (43%), Gaps = 78/623 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+       + K A +VG  +   
Sbjct: 30  KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNKVANVVGHTMQ-Y 85

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  ++ 
Sbjct: 86  HPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIEARLSKFALDVVF 141

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  HN  E+ ++++ 
Sbjct: 142 --SPKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDSSIK 199

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +           ++ + PDFPT GII       V  Y  G  G ++R R  + +  +  
Sbjct: 200 HLKGQ--------KFKLFPDFPTSGIID------VTGYNDGLRGGKIRVRAKISQSDKN- 244

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V++EIPY    S LI+ I +    K    ++ I D +A DV I++      + PD  
Sbjct: 245 -TLVISEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAADVEILVHL-PAGISPDKT 301

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +  E+       ++   + P  + +  +L+    +  E+L      ++  ++ 
Sbjct: 302 IDALYAFTACESSISPLGCIIEDNK-PLFIGVTEMLQRSTDYTVELLKEELEIQLGELEE 360

Query: 386 RVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           +        I   N            + +IA I    KP    + R ++TE  +  +  +
Sbjct: 361 QWHFSSLERIFIENRIYRDIEEEETWEGVIAAIDKGLKPHTKHLKR-AVTEEDITRLTEI 419

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R++ + K +  + +  LD+L     ++     + +          + +K+ + K    GR
Sbjct: 420 RIKRISKFDLDKAQQLLDSLEERIAEVKH---NLEHLVEFAINYFKNLKDKYGK----GR 472

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R +   V            IE   + +  +     +   +          K+ + +   
Sbjct: 473 ERKSEIRVF---------DDIEATKVVIRNT-----KLYVNREEGFVGTSLKKDEYVTD- 517

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA-FVYDSTCK 613
                 D I++ + DG         + S    G+ I  +          T   +Y     
Sbjct: 518 --CSDIDDIIVFTKDGHMM---VSKVDSKIFVGKNIIHVAVFKKKDKRTTYNMIYKDG-- 570

Query: 614 LLVVSSKGNAFIVEESEIIANTR 636
                 KG A  ++   + + TR
Sbjct: 571 ------KGGASYIKRFNVTSVTR 587


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 141/564 (25%), Positives = 251/564 (44%), Gaps = 66/564 (11%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +A+ +       +L YA   I ERA+P L DG KPV RRI+H+M +M       F K+A 
Sbjct: 19  EALHVSEMYSNWFLEYASYVILERAVPALLDGLKPVQRRILHSMKQMD---DGRFNKAAN 75

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARM 136
           I+G  +   HPHGD ++ ++LV L Q  +    LI  QGN+G+I  GDSAAA RY EAR+
Sbjct: 76  IIGHTMQ-YHPHGDAAIGEALVNLGQKDL----LIETQGNWGDISTGDSAAAPRYIEARL 130

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  +    +    +++ +Y+    EPV+ P KFP LLA G  GIAVG+AT I  HN 
Sbjct: 131 SKFA--LEVAFNNQTTEWQLSYDGRKKEPVLLPMKFPLLLAQGAEGIAVGLATRIMPHNF 188

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ EA++  +   E++        + PDFPTGG+   S       Y  G  G R+  R 
Sbjct: 189 IELLEASIDTLRGKEVN--------LLPDFPTGGMADFSN------YNEGLRGGRINVRA 234

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E + +    +V+  IPY    + +++ I +     +I  ++ + D +A+DV IV+   
Sbjct: 235 KIEILEKK--TLVIRSIPYTTTTANVMDSIVKANENGKIK-IKRVVDNTAKDVEIVVELP 291

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             ++ PD+ +++++  +D E     N  V+   + P+ + ++ ILK    H   +L R  
Sbjct: 292 P-NVSPDVTIDALYAFTDCEISISPNACVIIDEK-PRFLGVNEILKISAKHTVGLLKREL 349

Query: 377 SFRMQAIDRRVEILKG-----LLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTE 425
             ++  +                  Y +I+E      +IA I     P      R  + E
Sbjct: 350 EIKLGELREAWHFSSLEKIFIEKRIYRDIEECETWEGVIAAIDKGLMPYKKHFQR-EINE 408

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             + ++  ++++ + + + ++    +  L  E ++++  L   K            + + 
Sbjct: 409 EDIVSLTEIKIKRISRFDSFKANEAIKALEVEIKQVEYDL---KHLTEYAIAWFENLIKK 465

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           + K    GR R T                          + + +I  +            
Sbjct: 466 YGK----GRERKTQIRNFETIHVAQ----------VAQANQKLYINRMD----GFIGYGL 507

Query: 546 KEGDSLKIALHAHTTDRILLLSTD 569
           ++ + +         D I++  +D
Sbjct: 508 RKEEYIGD---CSDIDDIIVFLSD 528


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 112/213 (52%), Positives = 159/213 (74%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++ 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ +++D +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+  NP+I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   + A+  +EE 
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLPAKAQIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I++TEIPYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 173/409 (42%), Gaps = 27/409 (6%)

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPV 416
           +++ +L H+REVL RR+++ ++  + R  I+ GL+ A   +D++I  IR+       K  
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ RF  TE Q +AI++L+L  L   +   +++E   L       + +L+S K+    + 
Sbjct: 61  LIERFDFTEIQAEAIVSLQLYRLTNTDITALENEAAALSRAIISYNKILSSSKELDKVMK 120

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+ EVK+ ++        R T  +    +     + +I  E + V ++  G+I+     
Sbjct: 121 KELAEVKKNYASP------RLTVIQDQIEELKIDTEVLIASEEVIVSVTKEGYIKRTSLR 174

Query: 537 SVDLS---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591
           S   S    L  KEGD        +T + +L+ ++ G     P   +  L  +  GE + 
Sbjct: 175 SYGASKPNELGIKEGDYPLYIQQLNTLNHLLIFTSKGNIIYRPVNEISDLRWKDMGEHLS 234

Query: 592 LLIDLNHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSE 647
             I  + ++ +V  F             ++ +G       SE  I    K K+F  +  +
Sbjct: 235 QNIAFSADETVVKVFGITQQLPQATFTFITKEGYIKQTAVSEYVIGRNYKNKSFSAIKLK 294

Query: 648 ---EKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG--IS 698
              +++  ++         V +V      L +S++++P +  +  GV+  + K+G   I+
Sbjct: 295 TATDELINIIHTENPLLKDVFLVTHRGFGLRYSLEEVPVVGSKAAGVKSINLKEGDYVIN 354

Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            V+          +    R   +  N L      R   G L+ +   ++
Sbjct: 355 GVLIDVEASKKELMILTHRGSIKKMNILDFESLGRAKRGLLLLRELKKN 403


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 142/606 (23%), Positives = 247/606 (40%), Gaps = 70/606 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L  + +  +L YA   I +RA+P L DG KPV RRI+H++ E+       + K A +VG
Sbjct: 37  PLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRIMHSLKELD---DGRYNKVANVVG 93

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQV 139
               + HPHGD S+Y ++V + Q    R  LI  QGN+GN + GD AAA RY EAR++  
Sbjct: 94  H-SMRYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTLTGDGAAAARYIEARLSPF 148

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++   +     ++ +Y+  + EP   P KFP LL+ G  GIAVG+A  I  HN  EI
Sbjct: 149 ARDVVF--NPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAEGIAVGLACKILPHNFNEI 206

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +AA+  ++          E+ + PDF TGG+   +       Y  G  G RV  R   +
Sbjct: 207 IDAAIYHLNGD--------EFELYPDFETGGVADFTN------YNDGLRGGRVLVRAVFD 252

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            V    + IV+ EIP+      LI+ I     +K    ++ I D ++E   I L      
Sbjct: 253 IVS--KYQIVIREIPFGCTTGSLIDSILSA-NSKGKIKIKKIEDNTSEKAEI-LITLPPG 308

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
            D    ++++++ +D +     N  ++     P  + +  +L+    + + +L      +
Sbjct: 309 SDAQATIDALYVFTDCQVSIAPNACIIEDD-TPLFIGVSEMLRRSADNVKALLKLELEIK 367

Query: 380 MQAIDRRVEIL-----------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           +  ++ +                  +      D +I+ I     P    + R    E+  
Sbjct: 368 LAELEEKWHFDSLERIFIEERIYRRIEECETWDAVISEIHKGLDPFKPTLKREVTDEDVA 427

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             +  +R++ + K   ++   E+     E       L S  +        ++E    + K
Sbjct: 428 R-LTEIRIKRISKYNSFKANDEIKKTEKEIRATKRNLKSLTKFATAYFENLKE---KYGK 483

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
               GR R T  E    +     +  +  E + V     G+I               K+ 
Sbjct: 484 ----GRERRTRIE--SFETIKAAEVALPTEKLFVNR-EDGFI-----------GFSLKKD 525

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH-NQDIVTAFV 607
              +        D ++  S+DG   T     +      G+ IQ +      +++ +   V
Sbjct: 526 ---EFLCECSQLDDVIAFSSDG---TFRVSRVADKVFMGKDIQHVAVWKKGDEETIYDMV 579

Query: 608 YDSTCK 613
           Y    +
Sbjct: 580 YRDGAR 585


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/245 (42%), Positives = 163/245 (66%), Gaps = 1/245 (0%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  +  + V+ + +R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
            A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTEA++++ AE++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT IP HNV+E+ +A + LIDNP+  + ++++++ GPD+PT   I+  +  +  S     
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISLKRKLKRSIATAV 241

Query: 248 GGFRV 252
              R 
Sbjct: 242 AASRC 246


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 110/224 (49%), Positives = 151/224 (67%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + E +        +++ Y+ Y++S I  RAIPD RDG KPV RR+++ MSE+ L      
Sbjct: 1   MAEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPH 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSARIVG+ +GK HPHGD S+Y++LV ++Q F +  PL++G GNFG+I+GD AAA RYT
Sbjct: 61  RKSARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+ + AE +     +  V+F   Y+E + EP V P + PNLL NG  GIAVGM+TSIP
Sbjct: 121 EARLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIP 180

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
            HN+ E+ +   A IDNPE+  E+LL ++ GPDFPTGGII   R
Sbjct: 181 PHNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIATKR 224


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VI K HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 159/730 (21%), Positives = 294/730 (40%), Gaps = 105/730 (14%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN+        ++     +    ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 21  DNLEQPELEPTQDDVLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 80

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 81  LD---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQVGQKDL----LIDMQGNWGNILT 132

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  +L   +    D++ +Y+    EP+  P +FP LLA G  G
Sbjct: 133 GDRAAASRYIEARLSKFALEVLF--NPKITDWQLSYDGRRKEPINLPVRFPLLLAQGAEG 190

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ +A++  +            + I PDF TGG      E+ + +
Sbjct: 191 IAVGLSTRILPHNFIELIDASIKHLQGK--------RFKIYPDFQTGG------EADISN 236

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G +VR R  + +  +    ++++EIPY    + LI+ I +    K    ++ I 
Sbjct: 237 YNDGLRGGKVRVRAKISQQDKN--TLLISEIPYGTTTTTLIDSILKA-NDKGKIKIKKIE 293

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I++     ++ PD  +++++  +  E        ++     P+ + +  IL+
Sbjct: 294 DNTAANVEILVHLPP-NISPDKTIDALYAFTRCEESISPLSCIIINN-RPEFIGVSEILR 351

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNED 411
               H   +L      ++  ++ +        I   N            + +I  I    
Sbjct: 352 RSTDHTVSLLKSDLEIKLDELESQWHYASLERIFIENRIYRDIEEEETWEGVIQAIDKGL 411

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           KP    + R ++TE  +  +  +R++ + K +  + + ++D L  + E++   L+     
Sbjct: 412 KPHTAHLKR-AVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDQIEEVKHHLDH---L 467

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                     +K+ + K  D       F ++           +             G+I 
Sbjct: 468 VEFAINYFANLKKDYGKDKDRKTELKAFEDIEATKVVIRNTKLYVNRA-------EGFI- 519

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                         K  + +         D I+  + DG           S    G+ I 
Sbjct: 520 ----------GTSLKRDEYVTD---CSDIDDIICFTEDGTMMVTKVD---SKTFIGKNII 563

Query: 592 LL-IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII--------ANTRKGKTF- 641
            + +    ++  +   +Y         S          + +         ++ +  K F 
Sbjct: 564 HVAVFKKKDKRTIYNMIYRDAK-----SRNTYMKRFAVTSMTRDREYNMGSDKKNTKVFY 618

Query: 642 --LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRL--------- 689
                + E ++  V       V       K L F +D   +M+ +G+GV+          
Sbjct: 619 FSANPNGEAEVVTVYLRQVGQV-------KKLKFEVD-FSDMAIKGRGVKGNIVTKHPVK 670

Query: 690 -QSYKDGGIS 698
               K+ G+S
Sbjct: 671 RIELKEEGVS 680


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 116/336 (34%), Gaps = 49/336 (14%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +L S ++    I  E+  ++  FS +     RRT   E++ A      + +I +
Sbjct: 1   IAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIAR 52

Query: 518 EPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S+ G+++          +      SA   KE D ++  L A+T D ILL ST 
Sbjct: 53  EDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTR 112

Query: 570 GKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624
           GK Y +    L   S    G+ I  L+ L  N+ I        +     + + +  G   
Sbjct: 113 GKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDKFIFMATGDGTVK 172

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ------ 677
                +       G   L +  E+ +  V    G+  + +  +  K++ F   +      
Sbjct: 173 KTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVD 232

Query: 678 -------------------IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717
                              +  M R   GVR     DG     +     EG   +     
Sbjct: 233 ENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD-VLTVTEN 291

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            Y +  +        RG  G +  K   R+G  + +
Sbjct: 292 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGA 327



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 37/260 (14%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIA 554
           E +    A L      ++    + +  G ++              L AL+ ++ DSL   
Sbjct: 142 EENERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGV 201

Query: 555 LHAHTTDRILLLSTDGKAYTL----------------------PAGNLLSGRGHGEAIQL 592
                   I+L S  GK                          P       R  G     
Sbjct: 202 DITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAG 261

Query: 593 L--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS-- 646
           +  + L     +V+  V  +   +L V+  G       SE     R  +G   +KVS   
Sbjct: 262 VRGMKLADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN 321

Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
              +  V    GD   ++     L+   + ++ ++ R  +GV L    +G    V+  + 
Sbjct: 322 GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEG--ESVVGLQR 379

Query: 706 CEGLTWIDSAGRSYNRSEND 725
            + +   +         END
Sbjct: 380 IDEIEESELPEGEEALVEND 399


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 142/574 (24%), Positives = 245/574 (42%), Gaps = 69/574 (12%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L       +L YA   I ERA+P   DG KPV RRI+HAM  +       + K A +VG
Sbjct: 31  PLTGMYRNWFLDYASYVILERAVPHSDDGLKPVQRRILHAMKRLD---DGRYNKVANVVG 87

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ 
Sbjct: 88  HTMQ-FHPHGDASIGDALVQLGQKNL----LIDTQGNWGNILTGDDAAAPRYIEARLSKF 142

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++   +     ++ +Y+  + EP+  P KFP LLA G  GIAVG++  I  HN  E+
Sbjct: 143 ALDVVF--NPKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGEL 200

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
           C+AA+  +     +        I PDF TGG         V +Y+ GR G  V+ R  + 
Sbjct: 201 CQAAIQYLRGEAFT--------IYPDFQTGG------SIDVSNYKEGRRGGSVKVRAKIS 246

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++      +V+TEIP+      +I+ I       +I + +   + +AE    +L      
Sbjct: 247 KLDNNK-TLVITEIPFGTTTQSIIDSILRANEKGKIKVRKVDDNTAAE--VEILVHLAPG 303

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
              D  +++++  +D E     N  V++  + P+ + ++ +L++ +       R E+  R
Sbjct: 304 TSSDKAIDALYAFTDCEVSISPNCVVITDKK-PRFLSVNEVLQQSVDRTMSLLRSELEIR 362

Query: 375 RSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           R           ++   I+ R+   K    A    D     I     P      R  +T+
Sbjct: 363 RHELLESLHYASLERIFIEERIYKDKAFEQAIST-DAACIHIDERLTPYYPQFYR-EVTK 420

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             +  +L +++  + K  + +    +  + A+  +I+  LN+           I   + +
Sbjct: 421 EDILRLLEIKMARILKFNKEKADELIARMTADVARINKDLNNMTGVT------INWFQLL 474

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           F K      RRT   E+   D     + +   + + V  ++                   
Sbjct: 475 FDKYAAEHPRRT---ELRSFDTIVASKVVEANQKLYVNRAD------------GFMGTSL 519

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           K+ + +    +    D ++L   DG    +   +
Sbjct: 520 KKDEFVD---NCSDIDDVILFYRDGTYKVVRVAD 550


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 145/589 (24%), Positives = 255/589 (43%), Gaps = 71/589 (12%)

Query: 8   NSNTLVEENVKAVS-----LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           NS  L +E +  +      +     E +L YA   I ERA+P   DG KPV RRI+H+M 
Sbjct: 23  NSELLSDEEIFNLKTDTGHVDDMFSEWFLDYASYVILERAVPHANDGLKPVQRRILHSMR 82

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-I 121
           E+       + K A ++G    K HPHGD S+ D++V+L Q  +    LI  QGN+GN  
Sbjct: 83  ELE---DGRYNKVANVIGN-TMKYHPHGDASICDAMVQLGQKDL----LIDTQGNWGNTF 134

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GDSAAA RY EAR+++ A  ++   +    ++  +Y+  + EP   P KFP LLA G  
Sbjct: 135 TGDSAAAARYIEARLSKFALDVVF--NPKTTNWLASYDGRNKEPETLPVKFPLLLAQGVE 192

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG+A  I  HN  E+ +  ++ +              I PDFPTGGI   S      
Sbjct: 193 GIAVGLACKILPHNFIELIDGCISFLRKQTPE--------IVPDFPTGGIADVSE----- 239

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G+ G RV+ R  +E   R    + +TE+P+    + LI+ I       +I  +  +
Sbjct: 240 -YNNGKRGGRVKVRARME--ARKKNLLAITELPFGKTTTSLIDSILSANDKGKIK-ISRV 295

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A+ V I+++  + S DP+   ++++  +D E     N+ V+   +         +L
Sbjct: 296 EDNTADKVEILIYLPSGS-DPETAEQALYAFTDCEVSVSTNICVIENEKPH-FFAAVDLL 353

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKG-----LLIAYLNIDE------IIAIIRNE 410
                  RE+L      ++  ++ +               Y  I+E      +I  + + 
Sbjct: 354 YLATEKTRELLRMELEIQLAELEEKWHFSSLEKIFIEKRIYRRIEEEETWEGVIQTVDDG 413

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            KP   +  R  +T + +  +L ++++ + K + ++    + +L     +      + K 
Sbjct: 414 LKPYKKLFKR-EITRDDILRLLEIKIKRISKYDSFKADEFIQSLEDAIAETQK---NLKY 469

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
                     ++K+ + K    GR R T  E++   K    + +I  E + V        
Sbjct: 470 LTKYTIKWFNDLKKKYGK----GRERRT--ELASFKKVAAHEVVIANETLYV-------- 515

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                     +    K+ +++       +   I+ ++ +GK       +
Sbjct: 516 ----DRKEGFAGTGMKKDEAV---CKCSSMSDIISINQEGKLIVSKVSS 557


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/189 (50%), Positives = 134/189 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VI K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 251/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L+          
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIVDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 147/582 (25%), Positives = 262/582 (45%), Gaps = 68/582 (11%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           N   ++ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M ++     
Sbjct: 16  NNNSQDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---D 70

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAA 128
             + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA
Sbjct: 71  GRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTGDRAAA 125

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY EAR+++ A  ++        D++ +Y+   +EPV  P KFP LLA G  GIAVG++
Sbjct: 126 SRYIEARLSKFALDVV--YSPKITDWQLSYDGRKNEPVNLPVKFPLLLAQGAEGIAVGLS 183

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T I  HN  E+ +A++  +            + I PDFPT GI+       V +Y  G  
Sbjct: 184 TKILPHNFIELIDASIKHLQGK--------RFQIYPDFPTSGIMD------VSNYNDGLR 229

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G +VR R  + ++ +    +V+TEIP+    + LIE I +    K    ++ I D +A D
Sbjct: 230 GGKVRVRAKISQLDKN--TLVITEIPFGTNTTSLIESILKA-NDKGKIKIKKIEDNTAAD 286

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           V I++   N ++ PD  +++++  ++ E+       ++   + P  + +  +L+    H 
Sbjct: 287 VEILVHLPN-NISPDKTIDALYAFTNCESSISPLGCIIYDNK-PLFIGVSEMLRRSTDHT 344

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVM 417
            E+L      ++  +  +        I   N            + +I  I    KP    
Sbjct: 345 VELLKSELEIQLGELQEQWHFASLERIFIENRIYREIEEEETWEGVINAIDEGLKPHITH 404

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + R ++T   +  +  +R++ + K +  + + ++D L     ++   L +     +    
Sbjct: 405 LKR-AVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEETIAEVRHHLAN---LIDYAVS 460

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
               +K+ + +    G+ R T  E+   D    ++ +I    + V     G+I       
Sbjct: 461 YFTRLKKQYGE----GKERKT--EIRIFDDVDARKVVIRNTKLYVNR-EEGFI------- 506

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                   K+ + +         D I+  + DGK       +
Sbjct: 507 ----GTSLKKDEYVAD---CADIDDIIAFTRDGKMQVTKVDS 541


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 251/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DARVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L+          
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIIDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 251/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L+          
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIVDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 135/189 (71%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    F     K
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           RM ++ + +L  +D++ VD+   Y+ ++  P V P+K P LL NG+SGIAVGMAT+IP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 195 NVQEICEAA 203
           N+ E+ +  
Sbjct: 186 NLNEVLDGC 194


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 147/255 (57%), Gaps = 9/255 (3%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 1   SITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 60

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              ++    R  +  +++ +++  + ++T F +NM  L  G  P+V+ L   L  +L H+
Sbjct: 61  GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGE-PKVLNLKQCLVHYLDHQ 119

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           + V+ RR+++ ++  + R  IL+GL IA  ++D +I++IRN       +  ++ +FSLTE
Sbjct: 120 KVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTE 179

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q  AIL++RL+ L  LE  +I+ E  +L+    ++  +L + ++    I  E+ E+KE 
Sbjct: 180 KQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKER 239

Query: 486 FSKSTDLGRRRTTFC 500
           F+       RRT   
Sbjct: 240 FNDE-----RRTEIV 249


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 119/213 (55%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I+VTE+PYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 251/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L+          
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIVDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/178 (56%), Positives = 135/178 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSA
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 153/595 (25%), Positives = 260/595 (43%), Gaps = 71/595 (11%)

Query: 1   MGVD---NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRI 57
           M  D   N S   +  E     V +    E  +L YA   I ERA+P + DG KPV RRI
Sbjct: 1   MAKDINNNSSEEQSGNEHIHDVVHVNGLYENWFLEYASYVILERAVPHINDGLKPVQRRI 60

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +HAM  M       F K A ++G  +   HPHGD S+ D++V + Q  +    LI  QGN
Sbjct: 61  LHAMRVMD---DGRFNKIANVIGSTMQ-YHPHGDASIGDAIVNMGQKDL----LIEPQGN 112

Query: 118 FGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           +G+I  GDSAAA RY E R+++ A  ++   +ED  +++ +Y+    EPV  P KFP LL
Sbjct: 113 WGDIRTGDSAAAPRYIEGRLSKFALDVVF--NEDTTEWQASYDGRKKEPVTLPVKFPLLL 170

Query: 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           A G  GIAVG++T +  HN  E+ EA++A++ N         ++ I PDF TGG I    
Sbjct: 171 AQGVEGIAVGLSTKVLPHNFVELIEASIAVLKNK--------KFEIFPDFATGGFID--- 219

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
              V +Y  G+ G RVR R  +E++ +    +V+ +IP+    + LIE I +     +I 
Sbjct: 220 ---VSNYNEGQKGSRVRVRARIEDMDKK--TLVIKDIPFGTTTTSLIESIVKANDTGKIK 274

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++ + D +A+DV I +       DP + +++++  ++ E+    N  V+   +    + 
Sbjct: 275 -IKKVIDNTAKDVEIQVQLLP-GTDPGITIDALYAFTECESSISPNACVIVDDKPH-FLS 331

Query: 357 LDGILKEWLAHR-----REVLFRRSSFR-------MQAIDRRVEILKGLLIAYLNIDEII 404
           +  IL+           +E+  RRS          ++ I     I + +       D ++
Sbjct: 332 VHEILRICTRQTVDLLKQELQIRRSELLERILFSSLEKIFIENRIYRKIEECETWED-VL 390

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             I    +P      R   TE+ +  +  ++++ + K + ++    +     E ++++  
Sbjct: 391 LTIDKGLQPFKKQFYRTITTED-IVRLTEIKIKRISKFDSFKADELMRGYSNELKEVEHN 449

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L       N I   I     I  K      R+T   E+   D           + + +  
Sbjct: 450 LE------NIIDYSIAYYTGILKKYGKGRERKT---EIKTFDVINATVVAANNQKLYINR 500

Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +  G+I               K+    +        D +++   DG       G 
Sbjct: 501 AE-GFI-----------GFGLKKD---EYICDCSDIDDVIVFRRDGICVVKKIGE 540


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 251/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L+          
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIVDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 250/581 (43%), Gaps = 70/581 (12%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  V    L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A IVG  +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYI 160

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +    +     ++ +Y+  + EPV  P KFP LLA G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+ +A++A +           E+ + PDF TGG         +  Y  G  G  V
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGG------SIDIAKYNDGERGGSV 264

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V++EIPY    S +IE I +     +I  ++ + D +A+DV I+
Sbjct: 265 KVRAKIGKLDNK--TLVISEIPYGKTTSTVIESILKANDKGKIK-IKKVDDNTAKDVEIL 321

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH----- 367
           +      +  D  +++++  +D E     N  V+     P  + +  +L           
Sbjct: 322 VHLAP-GVSSDKTIDALYAFTDCEISISPNCCVI-KEDKPHFLTVSDVLHHSTDRTLELL 379

Query: 368 RREVLFRRSSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           R E+  ++           ++   I+ R+        A  N+DE I+ I    +P     
Sbjct: 380 REELKIQKQEQEEALFFASLEKIFIEERIYKDPEFENA-KNMDEAISHIDLRLEPFKPRF 438

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            R  +T + +  ++ +++  + K    +    +   L +  KI+  L   +   +     
Sbjct: 439 IR-EVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL---EHIIDYTIDW 494

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
              +KE + K+      R T       D     + +   E + +     G+I        
Sbjct: 495 FTMLKEKYGKAY----PRHTVI--RNFDTIEATKVVEANEKLYINR-QEGFI-------- 539

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +  K+ + +    +    D +++   +G    +   +
Sbjct: 540 ---GMGLKKDEFI---CNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 158/569 (27%), Positives = 252/569 (44%), Gaps = 67/569 (11%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
               +  +L YA   IKERAIPDL DGFKPV RRIIH + EM       F K A +VG  
Sbjct: 5   HSIFKRNFLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEMD---DGKFHKVANVVGW- 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQVAE 141
             + HPHGD S+Y++LV LA   +     I  QGNF  ++ GDSAAA RY E R+   A+
Sbjct: 61  AMRYHPHGDSSIYEALVNLANCDL----FIERQGNFGNSLTGDSAAAARYIECRLLPFAK 116

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L   + +  +F D+Y+  + EPVVFP+K P +L  G SGIAVGM+T I  HN  E+ +
Sbjct: 117 KVL--YNPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLD 174

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  A +            Y + PDF  GGI+       VE YR GRG   VRA+    + 
Sbjct: 175 AMAASLKGES--------YQLYPDFLGGGIVD------VEDYRDGRGSVSVRAKLNTTDP 220

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            R    I++ E+PY      +I  + E     ++  +  I D +AE V I +    R+  
Sbjct: 221 KR----IIIEELPYGTTSEAMIRSVEEAAKKGKLK-ISSINDYTAEKVNIEINL-ARNTY 274

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              ++++++  +D ET+  +N  V+    VP +M +  IL     H   VL         
Sbjct: 275 AQEIVDALYAYTDCETKLSINPLVIRDN-VPTIMGVHEILDWHAQHLVVVLKAELELEKG 333

Query: 382 AIDRRVE-----------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            +  ++             +   +    + +E+   +    KP    + R  + E+ V+ 
Sbjct: 334 HLLDKLHARTLERIFIEERIYKRIEQKKSAEEVNKAVITGFKPFEEQLFRPVVLED-VER 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L + +R +   +  + + E+D +     +I       ++  N I   +  + E+ +   
Sbjct: 393 LLKIPIRRISLFDIEKNREEIDQINDTVAEI------ERKLANLIGYALSYIAELKTMLG 446

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
               +R T  +          + + E+          G++               K G+ 
Sbjct: 447 IKEHQRKTTIKTFE---LIDVKEVAERNLAVKYDPANGYL-----------GYGVKTGN- 491

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             I L   T DR+L++  DG    + A  
Sbjct: 492 --ILLEVSTFDRVLIIRKDGTYQVIDAPE 518


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/213 (55%), Positives = 160/213 (75%), Gaps = 1/213 (0%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             LA+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE 
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEET 179

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
             G   I+VTE+PYQV K+RLIEKIA+L+  K+
Sbjct: 180 SSGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 160/628 (25%), Positives = 263/628 (41%), Gaps = 84/628 (13%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++      +L YA   IK+RAIPD+ DG KPV RRI+H++ E+       F K A IVG 
Sbjct: 4   VKTLFNRNFLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFEVD---DGKFHKVANIVG- 59

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQVA 140
              K HPHGD S+Y +LV LA   +     I  QGNF   I GD A+A RY E R+   A
Sbjct: 60  HCMKYHPHGDASIYSALVVLANKDL----FIDKQGNFGNPITGDEASAARYIECRILPFA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L        ++ D+Y+  + EPVVFPSK P LL  G  GIAVGM+T I  HN +E+ 
Sbjct: 116 KKVL--YSPQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVL 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
            A ++ +            + + PDFP GG++  S       Y+ G G   +RA+   ++
Sbjct: 174 RAVVSELKGE--------PFQLFPDFPNGGLVDVSD------YQDGLGKVLIRAKLDTKD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    I++ EIP+      LI  I       R+  +  I D ++E V I +    R +
Sbjct: 220 PKR----IIIKEIPFGTTTESLIASIEAAARKGRVK-ISQINDYTSEAVEIEI-KLARGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               +++S+F  +D E    +N+ V+    +P  M +  +++     R+ V    +  ++
Sbjct: 274 YTKEVVDSLFAYTDCEYSVSVNLLVI-KDGLPTQMTVPEVIRYHA--RQLVAVLEAELKV 330

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------RFSLTENQV 428
           +  D + +I    L      + I   I      + V+ +               +TE  V
Sbjct: 331 EEADLKEKIHARTLERIFIEERIYKRIEEMKTRETVISAVIEGFKPFKKEIPREVTEEDV 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ-WNQIACEIREVKEIFS 487
           + +L + +R +   +  + + EL  L    +++   L +        I   +++    F 
Sbjct: 391 ERLLKIPIRRISLYDIEKARKELAELQGRLKEVRYHLKNLVAYAIGFIEGVLKDTAGRFP 450

Query: 488 KSTDLGR-RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           + T +GR  +    EV+  D      A              G++               K
Sbjct: 451 RRTKVGRFEKVDVREVAARDLDLRYDA------------KTGYL-----------GYDLK 487

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ--LLIDLNHNQDIVT 604
            GDSL      +  DR+L++  DG        ++      G+ +    + D     D   
Sbjct: 488 GGDSL---FAVNQYDRVLIIRGDGTY---RVTDVPEKMFVGKGLMYCGIADKEELADCHF 541

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEII 632
           + VY  T     V+           + I
Sbjct: 542 SIVYQDT-----VTKHLYIKRCTIEQFI 564


>gi|332883978|gb|EGK04258.1| hypothetical protein HMPREF9456_01286 [Dysgonomonas mossii DSM
           22836]
          Length = 910

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 247/574 (43%), Gaps = 66/574 (11%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L    +  +L YA   I ERA+P + DGFKPV RRI+H+M  M       + K A I
Sbjct: 46  QTHLSGMFQNWFLDYASYVILERAVPHISDGFKPVQRRIMHSMKRMD---DGRYNKVANI 102

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMT 137
           +G  +   HPHGD S+ D+LV+L Q  +    L+  QGN+GN+  GD AAA RY EAR++
Sbjct: 103 IGHTMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNVFTGDGAAAPRYIEARLS 157

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           + A  ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  
Sbjct: 158 KFALEVIF--NPKTTEWKPSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFN 215

Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257
           ++C+AA+A +           ++   PDF TGG I  S+      Y  G  G  V+ R  
Sbjct: 216 DLCDAAIAHLQGE--------KFAFYPDFQTGGYIDVSK------YNDGERGGSVKVRAK 261

Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           + ++      +V+++IPY    S ++E I +     +I  +  + D +A++V I +    
Sbjct: 262 ISKLDNK--TLVISDIPYGRTSSSVVESILKANDKGKIK-IRKVDDITAQNVEIQVHL-A 317

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
             +  D  +++++  +D E     N  V+   + P  + +  IL+    +   +L +   
Sbjct: 318 AGVSSDKTIDALYAFTDCEISISPNCCVIEDNK-PYFLTVSDILRHTTDNTLSLLRQELE 376

Query: 378 FRMQAIDRRVEI----------LKGLLIAYLNIDEIIAIIRNEDK--PKPVMVSRFSLTE 425
            +   ++  +                   + N D +   + + DK   K        +T 
Sbjct: 377 IQKSELEESLHFSSLEKIFIEERIYKDKEFENADNMDIAVEHIDKRLAKYAKQFIREVTR 436

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             +  ++ +++  + K    +    +     E E+I     + +   +        +KE 
Sbjct: 437 EDILKLMEIKMGRILKFNSDKADELIARYKDEIEEIKH---NIENIVDYTISWFVMLKEK 493

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           + K       R T  E+   D     + +   E + +     G+I               
Sbjct: 494 YGKD----FPRKT--EIRSFDTIEATKVVEANEKLYINR-EEGFI-----------GTSL 535

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           K+ + +    +    D I++   DGK   +   +
Sbjct: 536 KKDEFV---CNCSDIDDIIIFFKDGKYKIVKVSD 566


>gi|332293168|ref|YP_004431777.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 143/637 (22%), Positives = 276/637 (43%), Gaps = 82/637 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E +  VS  F   + +L YA   I ERA+P + DGFKPV RRI+HA+ E+       + K
Sbjct: 29  ETITRVSGMFE--DWFLDYASYVILERAVPSIEDGFKPVQRRIMHALKELD---DGRYNK 83

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY E
Sbjct: 84  VANVVGHTMQ-YHPHGDASIGDAMVQIGQKDL----LIDTQGNWGNILTGDRAAASRYIE 138

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+T+ A  ++   +    +++ +Y+    EP+  P  FP LLA+G  GIAVG++T +  
Sbjct: 139 ARLTKFALDVV--YNPKITEWQASYDGRKKEPINLPVMFPMLLASGAEGIAVGLSTKVLP 196

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A++  + + + +        + PDFPT GI   +       Y+ G  G +VR
Sbjct: 197 HNFIELIDASIKHLKDKKFT--------LYPDFPTAGIADFTD------YKDGMRGGKVR 242

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  + +  +    +V+TE+P+    + LI+ I +    K    ++ I D ++ +V I++
Sbjct: 243 CRARISQQDKN--TLVITELPFGQTTTSLIDSILKA-NDKGKIKIKKIEDNTSANVEILV 299

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                 + PD  +++++  ++ ET       V+   + P  + +  +L+      +++L 
Sbjct: 300 HL-PGGISPDKTIDALYAFTNCETSISPLSCVIENNK-PLFVGVTEMLRRSTDRTKDLLK 357

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVMVSRFS 422
                ++   + +        I   N            D +I  I +  KP    + R +
Sbjct: 358 AELEIQLGEFENQWHYASLERIFIENRIYRDIEEQETWDGVIKAIDDGLKPHIGHLKR-A 416

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T   +  +  +R++ + K +  + + ++D L  +  ++   L++              +
Sbjct: 417 VTVEDITRLTEIRIKRISKFDIDKAQQKIDALEDQITQVKYHLDN---LTQYAIDYFTRL 473

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
           K+ + K    G+ R T  ++    +A             V+ + + ++    + +     
Sbjct: 474 KKDYGK----GKERKTEIKIFDDIQAAK----------VVLRNTKLYV----NRAEGFVG 515

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
              K+ + +         D +++ +  G    +      S    G+ I  +         
Sbjct: 516 TSLKKDEYVTD---CSDIDDVIVFTKSGTMMVVKV---ESKTFIGKDILHVAIFKKKDKR 569

Query: 603 VTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRK 637
            T           ++   GN     V+   + + TR 
Sbjct: 570 TT---------YNMIYRAGNGLPTYVKRFNVTSVTRN 597


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 102/183 (55%), Positives = 139/183 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ 
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 201 EAA 203
              
Sbjct: 181 NGC 183


>gi|332520464|ref|ZP_08396926.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
 gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 140/591 (23%), Positives = 252/591 (42%), Gaps = 67/591 (11%)

Query: 2   GVDNISNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
             D+++N N   +E  + ++ +    +E +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 5   QNDDLTNENLENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 64

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M ++       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GN
Sbjct: 65  MKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGN 116

Query: 121 I-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           I  GD AAA RY EAR+++    ++   +    +++ +Y+    EPV  P  FP LLA G
Sbjct: 117 ILTGDRAAASRYIEARISKFGLDVV--YNPKITEWQQSYDGRRKEPVNLPVMFPLLLAQG 174

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
             GIAVG++T I  HN  E+ EA++  +     +        + PDFPT GI   S    
Sbjct: 175 GEGIAVGLSTKILPHNFIELIEASIKHLQGKRFT--------LVPDFPTAGIADFSN--- 223

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
              Y  G  G +VR R  + +V      + +TEIPY    S LI+ I +    K    ++
Sbjct: 224 ---YNDGLRGGKVRVRAKISQVD--KTTLAITEIPYGTTTSSLIDSILKA-NDKGKIKIK 277

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            I D +A +V I++   +  L PD  +++++  +  E+       V+   + P  + +  
Sbjct: 278 KIEDNTAAEVEILIHLPS-GLSPDKTIDALYAFTSCESSISPLGCVIEDNK-PLFIGVTE 335

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIR 408
           +L+    +  ++L +    ++   + +        I   N            D +I  I 
Sbjct: 336 MLRRSTDNTVQLLKQELEIKLGEFEEQWHFASLERIFIENRIYRDIEEEETWDGVINAID 395

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
              +P    + R ++T   +  +  +R++ + K +  + + ++D L  +  ++   L + 
Sbjct: 396 KGLQPHIKHLKR-AVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEEQIAEVKHHLAN- 453

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
                 +            K    G+ R T         AT          + +  +   
Sbjct: 454 ------LIDYAIAYFSRLKKEYGEGKERKTEIRAFEDVDAT---------KVVIRNT--- 495

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
             +   +          +  + +         D I+  +  GK       +
Sbjct: 496 --KLYVNREEGFIGTSLRRDEYVCD---CSDIDDIIAFTASGKMMVTKVDS 541


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 153/631 (24%), Positives = 279/631 (44%), Gaps = 82/631 (12%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + K A IVG 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV++ Q  +    L+  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQKDL----LVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +     ++ +Y+  + EP+  P+KFP LLA G  GIAVG+++ I  HN+ EIC
Sbjct: 152 LDVVF--NPKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EAA+  +           ++ + PDFPTGG         VE Y  G+ G  ++ R  +E+
Sbjct: 210 EAAIHYLRGE--------KFQLYPDFPTGG------SIDVEKYNDGQRGGTLKVRAKIEK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      +V+ EIP+    + LI+ I   I   +I   + + D +A +V I +      +
Sbjct: 256 LDNK--TLVIKEIPFSKTTTTLIDSILRAIDKGKIKA-KKVDDNTAAEVEIQVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-----HRREVLFRR 375
             D  +++++  SD E     N  V+   +    + +  +L+  +       R+E+  R+
Sbjct: 312 SSDKTIDALYAFSDCEINVSPNCCVIEDDKPG-FLTISDVLRHNVDSTMGLLRKELEIRK 370

Query: 376 SSFR-------MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +          ++   I+ R+   K    A  ++D ++A + N  +P      R  +T +
Sbjct: 371 NELLEQLFFASLEKIFIEERIYKDKKFEEA-KDLDSVVAHVDNRLEPFKPNFIR-EVTRD 428

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L +++  + K  + +    +    A+ + ID  L       +        +++ +
Sbjct: 429 DILRLLEIKMNRILKFNKDKANDFIARTKADIKSIDHDLAH---MTDVTIHWFEFIRDKY 485

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            K       R T  E+   +     + +   E + +     G++               K
Sbjct: 486 GKD----HPRLT--EIRSFETIEATKVVEANEKLYIDR-QEGFV-----------GTGLK 527

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTA 605
           + + +    +    D I++   DGK   +   + +  G+     I + +   +++  +  
Sbjct: 528 KNEFV---CNCSDIDDIIIFYKDGKFKIIRVADKIFVGK---NVIHVQVFKKNDKRTIYN 581

Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
            VY           KG  FI +   + + TR
Sbjct: 582 VVYQDG-------KKGTYFI-KRFNVTSITR 604


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 100/177 (56%), Positives = 134/177 (75%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
             V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 152/200 (76%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEICEAALALIDNPEIS 213
           H++ E+ +  LAL  NPEI+
Sbjct: 186 HHLGEVIDGVLALSHNPEIT 205


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 157/726 (21%), Positives = 293/726 (40%), Gaps = 99/726 (13%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           ++ +S T          +    E+ +L YA   I ERA+P + DGFKPV RRI+HA+ E+
Sbjct: 17  DMLSSQTGEGSGETITRVSGMFEDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEL 76

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DG 123
                  + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  G
Sbjct: 77  D---DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQKDL----LIDTQGNWGNILTG 128

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           D AAA RY EAR+++ A  ++   +    D++ +Y+    EP+  P  FP LLA G  GI
Sbjct: 129 DRAAASRYIEARLSKFALDVV--YNPKITDWQASYDGRKKEPINLPVMFPLLLAQGAEGI 186

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           AVG++T +  HN  E+ +A++  +     +        I PDFPT GI   +       Y
Sbjct: 187 AVGLSTKVMPHNFIELIDASIKHLKGKRFT--------IYPDFPTAGIADFTD------Y 232

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           + G  G ++R R  + +  +    +V+TE+P+    + LI+ I +    K    ++ I D
Sbjct: 233 KDGLRGGKIRCRARMSQQDKN--TLVITELPFGQTTTSLIDSILKA-NDKGKIKIKKIED 289

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            ++ +V I++   +  + PD  +++++  ++ ET       V+   + P  + +  +L+ 
Sbjct: 290 NTSANVEILVHLPS-GISPDKTIDALYAFTNCETSISPLGCVIEDNK-PLFVGVSEMLRR 347

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDK 412
                + +L      ++   + +        I   N            D +I  I    K
Sbjct: 348 STDRTKALLKSELEIQLGEFENQWHYASLERIFIENRIYRDIEEQETWDGVIEAIDKGLK 407

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           P    + R ++T   +  +  +R++ + K +  + + ++D L  +  ++   L++     
Sbjct: 408 PHIGHLKR-AVTVEDITRLTEIRIKRISKFDIDKAQQKIDALEDQIAQVKHHLDN---LT 463

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532
                    +K+ + K    G+ R T   V    +A             V+ + + ++  
Sbjct: 464 QYAIDYFTRLKKDYGK----GKERKTEIRVFDDIQAAK----------VVLRNTKLYV-- 507

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
             + +        K  + +         D I++ +  G    +      S    G+ I  
Sbjct: 508 --NRAEGFVGTSLKRDEYVTD---CSDIDDIIVFTKSGSMMVVKV---ESKTFIGKDIIH 559

Query: 593 LIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANT-------RKGKTFL-- 642
           +          T   +Y +   L              + +  N        +KG   L  
Sbjct: 560 VAIFKKKDKRTTYNMIYRAGSGL-----PTYVKRFNVTSVTRNNDYQLAGDKKGAQVLYF 614

Query: 643 --KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKG-------VRLQSY 692
               + E ++  V        AV    +  L      +    R  KG       V+    
Sbjct: 615 SANPNGEAELVTVYLR-----AVASVKKLRLEVDFADVLIKGRSSKGNIVSKNAVKSVEL 669

Query: 693 KDGGIS 698
           K+ G+S
Sbjct: 670 KEKGLS 675


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 155/374 (41%), Positives = 216/374 (57%), Gaps = 29/374 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K+RLIEK+A+L+  K++PLL D+RDESAEDVR+VL P++RS+DP +LMES+F LS++E R
Sbjct: 3   KARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELEAR 62

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            PLN+NVL  G VP+V+ L   L+EW+ HRR VL RRS++R+  I+RR+EIL GLLI YL
Sbjct: 63  VPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIVYL 122

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           ++DE+I IIR ED+PK  +++RF LT+ Q +AIL+ RLRSLRKLEE ++K E D L  EK
Sbjct: 123 DLDEVIRIIREEDEPKAALMARFELTDVQANAILDTRLRSLRKLEEMELKREFDELTKEK 182

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           + I+ LL S K QW  I  +IR VK+ F   T LG+RRTT                    
Sbjct: 183 QGIEELLGSEKLQWADITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGID--------- 233

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDS----LKIALHAHTTDRILL-LSTDGK-- 571
                 +  G  R+     V    L  +   +    +   L        ++    DG+  
Sbjct: 234 ----FTARHGRARADHGDPV-REGLDPRAEGARHRPVGRLLQGRRHAEGVVPQRDDGQDP 288

Query: 572 --------AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
                    +        +G G G+ ++L++DL+   +IV A  Y    KLL   S G  
Sbjct: 289 AARLERQGLHPRGVEAARAGPGFGDPVRLMVDLDDGTEIVAALPYKPESKLLFAGSDGRG 348

Query: 624 FIVEESEIIANTRK 637
           FI     + ANTR+
Sbjct: 349 FIAPSDALFANTRR 362


>gi|332829303|gb|EGK01957.1| hypothetical protein HMPREF9455_00079 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 908

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/579 (24%), Positives = 251/579 (43%), Gaps = 66/579 (11%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +     + L    +  +L YA   I ERA+P + DG KPV RRI+H+M  M       + 
Sbjct: 39  DSGDNQLHLSGMFQNWFLDYASYVILERAVPHITDGLKPVQRRIMHSMKRMD---DGRYN 95

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132
           K A I+G  +   HPHGD S+ D+LV+L Q  +    L+  QGN+GN+  GD AAA RY 
Sbjct: 96  KVANIIGHTMQ-FHPHGDASIGDALVQLGQKDL----LVDCQGNWGNVFTGDGAAAPRYI 150

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EAR+++ A  +L   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I 
Sbjct: 151 EARLSKFALEVLF--NPKTTEWKPSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKIL 208

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN  E+C+AA+A +           E+ + PDF TGG I  S+      Y  G  G  V
Sbjct: 209 PHNFNELCDAAVAHLQGE--------EFTLYPDFQTGGYIDVSK------YNDGERGGSV 254

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + R  + ++      +V+++IPY    S ++E I +     +I  +  + D +A++V I 
Sbjct: 255 KVRAKISKLDNK--TLVISDIPYGRTSSSVVESILKANDKGKIK-IRKVDDITAQNVEIH 311

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +      +  D  +++++  +D E     N  V+   + P  + +  IL++   + R +L
Sbjct: 312 VHL-AAGVSSDKTIDALYAFTDCEISISPNCCVIEDNK-PYFLTVSRILRDTTENTRRLL 369

Query: 373 FRRSSFRMQAIDRRVE---ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------- 420
                 +   ++  +    + K  +   +  D+      N D     +  R         
Sbjct: 370 KLELEIQKSELEETLHFSSLEKIFIEERIYKDKEFENAVNMDAAVEHIDKRLAKFAKLFI 429

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             +T   +  ++ +R+  + K    +    +     E E+I     + +   +       
Sbjct: 430 REVTREDIMKLMEIRMGRILKFNSDKADELIARYKEEIEEIKH---NIENITDYTISWYV 486

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            +KE + K+      R T  E+   D     + +   E + +     G+I          
Sbjct: 487 MLKEKYGKNY----PRKT--EIRSFDTIEATKVVEANEKLYINR-EEGFI---------- 529

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                K+    +   +    D I++   DGK   +   +
Sbjct: 530 -GTALKKD---EYVCNCSDIDDIIIFYKDGKYKIVKVSD 564


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 148/608 (24%), Positives = 256/608 (42%), Gaps = 71/608 (11%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +       EE++K VS     ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+ 
Sbjct: 2   MEEQENHHEESLKKVS--GLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMRELE 59

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124
                 + K A +VG    K HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD
Sbjct: 60  ---DGRYNKVANLVGN-TMKYHPHGDASITDAMVQIGQKEL----LIDMQGNWGNIYTGD 111

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RY EAR+T  A  ++   +     +  +Y+  ++EP+  P KFP LLA+G  GI 
Sbjct: 112 SAAAARYIEARLTPFALEVVF--NPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGVEGIG 169

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VG++T I  HN  E+  A++A + N            + PDF TGG++       V +Y 
Sbjct: 170 VGLSTKIMPHNFNELINASIAHLKNKSFE--------LYPDFLTGGMLD------VSNYN 215

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G  G R+R R  +  + +    + +TE+P+      LI+ I +    K    ++ I D 
Sbjct: 216 DGERGGRIRTRARI--IQKEKNTLCITELPFGKNTGDLIDSIIKA-NEKGKIKIKKIEDN 272

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +++ V I +   N  + PD  +++++  +D E     N  V+  G  P+ + +  IL+  
Sbjct: 273 TSDKVEINIHL-NSDVSPDKTIDALYAFTDCEIPISPNACVIV-GNRPEFLTVSEILRRN 330

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKP 413
             H   +L +     +  +  +        I   N            +E+   +    KP
Sbjct: 331 TDHTVSLLKKELEIELHELQEKWHFASLEKIFIENEIYQEIKGKSSKEEVYTAVDKGLKP 390

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
               + R ++T + +  +  L    + + ++ +    L  L A+ E++   L++      
Sbjct: 391 FTGNLLR-AVTTDDIIKLTELPFMRISRYDQDKAIENLLALEAKIEQVKYHLDN---LVA 446

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
                   +++ F K  +       F  +     A   +               G+I   
Sbjct: 447 YAIDYFTGIQKKFGKGKERKTELRIFDTIDATKVAVANEKFYANFE-------EGFI--- 496

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                       K+    +        D I+    DG   T+    +      G+ I+ +
Sbjct: 497 --------GTSLKKD---QYLFDCSDIDDIITFQKDG---TMKVVKVEPKTFIGKNIEHV 542

Query: 594 IDLNHNQD 601
                N  
Sbjct: 543 AVWKKNDK 550


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 112/219 (51%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            E+PYQV K+RLI KIA+L+  K+   + D RDES  + 
Sbjct: 180 PELPYQVNKARLIXKIADLVRDKKXEGITDXRDESDXNG 218


>gi|227873176|ref|ZP_03991467.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841007|gb|EEJ51346.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 409

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 116/327 (35%), Gaps = 27/327 (8%)

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +E  ++++E  +LLA+      +L   ++    I  E+  + + + +      R+T+F  
Sbjct: 1   MERERLENEYQDLLAKIAYYKEILGDERRLLAVIKEELDVIADKYGE-----DRKTSF-- 53

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553
               D     + +I  + + +  ++ G+I+                +  +   E D ++ 
Sbjct: 54  --SYDDILDAEDLIADDDVVITSTSLGYIKRMSPENFRQQNRGGKGIKGMQTIEKDYIED 111

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVY--- 608
                    I+  +  G+ + +    +   S    G A+  L+ L   + +  +      
Sbjct: 112 LFMTTNHHYIMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRDP 171

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                L++ +  G       SE     R G   + +  ++++     ++ D  + +V + 
Sbjct: 172 KDEQDLILTTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTKK 231

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICF-KICEGLTWIDSAGRSYNRSEND 725
              + F+   +    R   GV      DG   +VI   +  +G   +  + + Y +    
Sbjct: 232 GMAIQFNEKDVRRTGRSSMGVIGIRLNDG--DEVIGMQESSQGENMLVVSEKGYGKLTEK 289

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                  RGG G    K   ++G  + 
Sbjct: 290 SAFKAQNRGGKGMRCYKITEKTGDLVG 316



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 515 IEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLST 568
            + E   ++ +  G ++              L A+  KE D L  A      + I+L++ 
Sbjct: 171 PKDEQDLILTTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTK 230

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G A      ++         +   I LN   +++          +LVVS KG   + E+
Sbjct: 231 KGMAIQFNEKDVRRTGRSSMGVIG-IRLNDGDEVIGMQESSQGENMLVVSEKGYGKLTEK 289

Query: 629 SEIIANTRKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR- 683
           S   A  R GK      +   + + +   +      + ++     ++  S++ I  + R 
Sbjct: 290 SAFKAQNRGGKGMRCYKITEKTGDLVGFKLCDQDREILLITTEGIMIRMSLENISIIGRN 349

Query: 684 GKGVRLQSYKDGGISDVICFK 704
             GV+L +    G + +    
Sbjct: 350 ASGVKLMNLDKDGDTTIASVA 370


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 144/588 (24%), Positives = 260/588 (44%), Gaps = 69/588 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN  N     ++++  V      ++ +L YA   I ERA+P + DGFKPV RRI+HA+ E
Sbjct: 16  DNQENQEN-TQDSLTKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKE 72

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 73  LD---DGRYNKVANVVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILT 124

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RY EAR+++ A  ++         ++ +Y+    EP   P KFP LLA G  G
Sbjct: 125 GDSAAASRYIEARLSKFALEVVF--SPKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEG 182

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T +  HN  E+ ++++  +   + +        I PDFPT GII       V +
Sbjct: 183 IAVGLSTKVLPHNFIELIDSSIKHLKGQKFT--------IFPDFPTSGIID------VSN 228

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G ++R R  + ++      +V+ EIPY    S LI+ I +     +I  +  I 
Sbjct: 229 YNDGIRGGKIRVRAKISQLD--KSTLVINEIPYGTNTSSLIDSILKANEKGKIR-VRKIE 285

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A DV I++   +  L PD  +++++  +  E+       ++   + P  + +  +L+
Sbjct: 286 DNTAADVEILIHLPS-GLSPDKTIDALYAFTACESSISPLGCIIEDNK-PLFIGVTEMLQ 343

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNED 411
               +  E+L      +++ ++ +        I   N            + +I  I +  
Sbjct: 344 RSTDYTVELLRAELEVQLRELEEQWHFASLERIFIENRIYRDIEEQETWEGVIKAIDDGL 403

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           KP    + R ++TE  +  +  +R++ + K +  + +  +D L  +  ++ + L      
Sbjct: 404 KPYIKHLKR-AVTEEDIARLTEIRIKRISKFDIDKAQQLIDGLEEKIAEVKNHLAH---- 458

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
              I   I   K +    +  G+ R    E+   D     +  I    + V     G++ 
Sbjct: 459 --IIEFAIDYFKNL---KSKYGKDRERKSEIRIFDDIEATKVAIRNTKLYVNR-EEGFL- 511

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                         K  + +         D I++++  G+       +
Sbjct: 512 ----------GTSLKRDEYVGD---CSDIDDIIVMTKAGEMMITKVDS 546


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 147/611 (24%), Positives = 266/611 (43%), Gaps = 70/611 (11%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           ++V +    +E +L YA   I ERA+P + DGFKPVHRRI+H+M ++       + K A 
Sbjct: 22  ESVKVTGMFQEWFLDYASYVILERAVPAIEDGFKPVHRRILHSMKDLD---DGRYTKVAN 78

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARM 136
           IVG  +   HPHGD S+ D++V++ Q       LI  QGN+GNI  GD AAA RY EAR+
Sbjct: 79  IVGHTMQ-YHPHGDASIGDAIVQIGQKD----ILIDTQGNWGNILTGDRAAASRYIEARL 133

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++ A  ++   +    +++ +Y+    EPV  P KFP +LA G  GIAVG++T I  HN 
Sbjct: 134 SKFALEVVF--NPKTTEWQISYDGRKQEPVNLPVKFPMVLAQGAEGIAVGLSTKILPHNF 191

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            E+ +A++  ++    +        I PDF TGGI        V +Y  G  G ++R R 
Sbjct: 192 IELIDASIKHLEGKRFT--------IFPDFATGGIAD------VSNYNDGLRGGKIRVRA 237

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +E   +    +V+ EIPY    S LI+ I +    K    ++ I D ++ DV I++   
Sbjct: 238 TIEV--KDKNLLVINEIPYSTNTSTLIDSILKA-NDKGKIKIKKIEDNTSSDVEILVHLP 294

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           N ++ PD  ++++F  ++ E        V+   +    + +  +L+    +  E+L    
Sbjct: 295 N-NISPDKTIDALFAFTNCEVSISPLSCVIIDDKPH-FLGMSELLRMSTENTVELLKTEL 352

Query: 377 SFRMQAIDRRVE--------ILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             ++  ++ +          I K +          D +I  I    +P    + R  +T 
Sbjct: 353 EIKLGELEEQWHFASLEKIFIEKRIYRDIEEEETWDGVIDAIDRGLQPHIKHLKR-DITR 411

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           + +  +  +R++ + K +  +   +++ L A+ E +   L+      +      + +KE 
Sbjct: 412 DDISRLTEIRIKRISKFDLDKADQKIEALEADIEAVKQDLDH---LIDYSINYFKMLKEK 468

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           + K  +   R   F ++  +        +             G+I               
Sbjct: 469 YGKGKERKTRIQLFEDIEASKVVIRNTKLYVNRI-------EGFI-----------GTSM 510

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHNQDIVT 604
           K+ + +         D I+  + DG   T+    +      G+ I  + I    ++  + 
Sbjct: 511 KKDEYVTD---CSDIDDIICFTEDG---TMMVSKVEGKTFIGKNILYVGIFKKKDKRTIY 564

Query: 605 AFVYDSTCKLL 615
             +Y       
Sbjct: 565 NLIYKDGKAGF 575


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/213 (55%), Positives = 156/213 (73%), Gaps = 1/213 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF+DTY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C AA+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 144/581 (24%), Positives = 242/581 (41%), Gaps = 62/581 (10%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           + L +E      L    +  +L YA   I ERA+P + DG KPV RRI+HA   M +   
Sbjct: 44  DRLTQEEGGVRKLTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHA---MKVVDD 100

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAA 128
             + K A +VG+ +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA
Sbjct: 101 GRYNKVANLVGQTMQ-YHPHGDASIKDALVQLGQKDL----LIDCQGNWGNILTGDEAAA 155

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY EAR+++ A  ++   ++   ++  +Y+    EPV  P KFP LLA G+ GIAVG+A
Sbjct: 156 GRYIEARLSKFALDVVF--NKKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLA 213

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           + I  HN  E+  AA+A +           ++ + PDFPTGG+   SR      Y  G  
Sbjct: 214 SKILPHNFVELINAAIAHLQGR--------DFQLYPDFPTGGMADVSR------YNDGLR 259

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G  V+ R  + ++      + +TEIPY      + + I +     +I  +  + D +A+ 
Sbjct: 260 GGTVKVRAKISKID--KRTLAITEIPYTTTTESIKDSIIKANDKGKIK-IRKVDDNTADK 316

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           V IV+   +     D  +++++  +D E     N  V+   +    + +  IL+    H 
Sbjct: 317 VEIVIQV-SPDESSDKTIDALYAFTDCEVSIAPNSCVIWDEKPH-FLGVSEILRRSAEHT 374

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           + +L      R+  +          L      + +  +I      +    +     E   
Sbjct: 375 KSLLGLELKIRLGELSEAWH--AASLERIFIENRLYQLIEGCKSREEAYSAVDKGLEP-- 430

Query: 429 DAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQIACE 478
                +RLR    LE+ Q  +EL          +    E  +I+  L S +   + +   
Sbjct: 431 ---FKMRLRREVTLEDVQKLTELKFIRISRYDSEKADNEIRQIEEDLKSTQYDLDHLTEY 487

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                E        GR R T  E+   D     +  +    + V           ++   
Sbjct: 488 AVAYYERIRDKYGKGRERRT--ELREFDSIEATKVAVTNAKLYV----------DRAEGF 535

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                  K+ + +         D +++ + DG+       +
Sbjct: 536 FGIGKSMKDAEFVCD---CSDIDDVIVFTKDGRYVITKVSD 573


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/183 (53%), Positives = 133/183 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 CEA 202
            EA
Sbjct: 181 AEA 183


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 154/671 (22%), Positives = 277/671 (41%), Gaps = 82/671 (12%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++    VEE      +     E +L YA   I ERA+P + DGFKPV RRI+H+M ++  
Sbjct: 24  NDEMDHVEETETITRVTGMYREWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD- 82

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD 
Sbjct: 83  --DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKDL----LIDTQGNWGNILTGDR 135

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY EAR+++    ++   +     ++ +Y+    EP+  P  FP LLA G  GIAV
Sbjct: 136 AAASRYIEARISKFGLDVV--YNPKITKWQASYDGRRKEPINLPVMFPLLLAQGAEGIAV 193

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G++T +  HN  E+ +A++  +     +        + PDFPTGG++       V  Y  
Sbjct: 194 GLSTKVLPHNFLELIDASVKYLQGKRFT--------LFPDFPTGGMVD------VTDYND 239

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G  G ++++R  + +  +    +V+ EIP+      LI+ I +    K    ++ I D +
Sbjct: 240 GLRGGKIKSRARILQHDKN--TLVIREIPFGTNTGSLIDSILKA-NDKGKIKIKKIEDNT 296

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A DV I++      L PD  +++++  ++ ET       V+   + P  + +  +LK   
Sbjct: 297 AADVEILIH-IAAGLSPDKTIDALYAFTNCETSISPLACVIEDNK-PLFVGVSEMLKRST 354

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPK 414
                +L      ++   + +        I   N            + +I  I    KP 
Sbjct: 355 DRTVFLLKSELEIQLNEFEEQWHYASLERIFIENRIYRDIEEEETWEGVITAIDKGLKPH 414

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R ++TE  +  +  +R++ + K +  + + ++D L     ++   L       N 
Sbjct: 415 TSHLKR-AVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDSIAEVKHHLE------NL 467

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   I     +     +   R++   E+   D     + +I    + V     G+I    
Sbjct: 468 ITYAINYFTRLRKDYGEGKERKS---EIKVFDDIIASKVVIRNTKLYVNR-EEGFI---- 519

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL- 593
                      K  + +         D I+  + DGK          S    G+ I  + 
Sbjct: 520 -------GTSLKRDEYVTD---CSDIDDIIAFTKDGKMMVTKVD---SKTFIGKDIIHVA 566

Query: 594 IDLNHNQDIVTAFVYDSTCKL------LVVSSKGNAFIVEESEIIANTRKGKTF---LKV 644
           +    ++  +   +Y    K         V+S        E ++ A T+  K +      
Sbjct: 567 VFKKKDKRTIYNMIYKDGPKGATYIKRFAVTS---VTRDREYDMTAGTKGSKVYYFTANP 623

Query: 645 SSEEKMKLVVK 655
           + E ++  V+ 
Sbjct: 624 NGEAELVTVLL 634


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 108/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 153/205 (74%), Gaps = 1/205 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRI 295
           TEIPYQV K+RLIEKIA+L+  K+I
Sbjct: 180 TEIPYQVNKARLIEKIADLVRDKKI 204


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 118/213 (55%), Positives = 153/213 (71%), Gaps = 1/213 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D++ VDF+DTY+   SEP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+ALIDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++  R  I  +Y  GRG   +R R  +E  G  
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGRVNIEARGND 212


>gi|333029667|ref|ZP_08457728.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
 gi|332740264|gb|EGJ70746.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
          Length = 906

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 141/585 (24%), Positives = 254/585 (43%), Gaps = 69/585 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           +N+   EN+K   L    E  +L YA   I ERA+P + DG KPV RRI+H+M  M    
Sbjct: 18  NNSSSPENIKH-HLTGMYESWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD--- 73

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
              + K A IVG  +   HPHGD S+ D+L++L Q       LI  QGN+GNI  GD AA
Sbjct: 74  DGRYNKVANIVGHTMQ-FHPHGDASIGDALIQLGQKD----FLIDCQGNWGNILTGDRAA 128

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY EAR+++ A  ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+
Sbjct: 129 APRYIEARLSKFALEVVF--NPKTTEWQKSYDGRNKEPITLPLKFPLLLAQGAEGIAVGL 186

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           ++ I  HN  E+CEA++  ++  + +        + PDF TGG +  +R      Y  G 
Sbjct: 187 SSKILPHNFNELCEASINYLNGKKFT--------LYPDFQTGGYVDVAR------YNDGE 232

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  V+ R  + ++      + +TEIP+    + +I+ I + +   +I + +   + SA 
Sbjct: 233 RGGNVKVRAKINKIDN--RTLSITEIPFGKTTTSVIDSILKAVDKGKIKIRKVDDNTSAN 290

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
              IV  P    +  D  +++++  +D E     N  V+   +    + +  +LK+ + +
Sbjct: 291 VEIIVHLP--SGVSSDKTIDALYAFTDCEVSISPNCCVIDDNKPH-FLTVSDVLKKSVDN 347

Query: 368 RREVLFRRSSFRMQAIDRRVEI-------------LKGLLIAYLNIDEIIAIIRNEDKPK 414
             ++L +    R   ++  + +                      N+D     I     P 
Sbjct: 348 TLDLLQKELEIRKSELEEGLHLASLEKIFIEERIYKDKEFENAKNMDAACKHIDKRLTPF 407

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R  +T+  +  ++ +++  + K    + +  +  ++ E E+I+      K+  N 
Sbjct: 408 YPKLIR-EVTKEDILKLMEIKMGRILKFNTNKAEEGILKMMKEIEEIN------KELSNM 460

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           IA   R  K +  K    G+      E+   D   + + +   + +              
Sbjct: 461 IAYTSRWFKMLQDK---YGKDHPRLTEIRSFDNIEITKVVEANQKLYFNADE-------- 509

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                      K G+ +    +    D I++   +G     P  +
Sbjct: 510 ----GFMGTDLKGGEFIN---NCSDFDDIIIFYKNGTYMITPVAD 547


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 97/218 (44%), Positives = 148/218 (67%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 120 SIPIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 180 GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 161/245 (65%), Gaps = 3/245 (1%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +  RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETG 119

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           +G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES 
Sbjct: 120 KGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 178

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +   ++    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  ++ 
Sbjct: 179 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHYIN 237

Query: 367 HRREV 371
            +++V
Sbjct: 238 FQKDV 242


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/188 (57%), Positives = 147/188 (78%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPDF 226
           + L++++ GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 243/572 (42%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGE--------EFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + E+P+      + + I +     +I  +  + D ++E V I++      +
Sbjct: 256 IDNK--TLSIAEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISPNCCVIDEKKPH-FLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                +       N D     I     P      R  +T+  
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEVKFEQSENTDAACEFIDERLTPFYSQFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L++++  + K  + +    +  +  + E+I++ L         +   I   + +  
Sbjct: 430 ILKLLDIKMARILKFNKDKADENIARIKEQIEEINNHLAH------IVEYTIDWYQMLKD 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKQYPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTTLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +   +
Sbjct: 529 DEFI---ANCSDIDDVIIFYKDGKYKVVRVTD 557


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 243/572 (42%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGE--------EFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + E+P+      + + I +     +I  +  + D ++E V I++      +
Sbjct: 256 IDNK--TLSIAEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISPNCCVIDEKKPH-FLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                +       N D     I     P      R  +T+  
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEVKFEQSENTDAACEFIDERLTPFYSQFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L++++  + K  + +    +  +  + E+I++ L         +   I   + +  
Sbjct: 430 ILKLLDIKMARILKFNKDKADENIARIKEQIEEINNHLAH------IVEYTIDWYQMLKD 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKQYPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTTLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +   +
Sbjct: 529 DEFI---ANCSDIDDVIIFYKDGKYKVVRVTD 557


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 103/233 (44%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL N
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
           G+SGIAVGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSG 119

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I  +Y  G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  +
Sbjct: 120 IRAAYETGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGI 178

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            D+RDES  +   ++    R  +P++ +  ++  + M+  F + M  L   + 
Sbjct: 179 SDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQP 231


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 243/572 (42%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGE--------EFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + E+P+      + + I +     +I  +  + D ++E V I++      +
Sbjct: 256 IDNK--TLSIAEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISPNCCVIDEKKPH-FLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                +       N D     I     P      R  +T+  
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEVKFEQSENTDAACEFIDERLTPFYSQFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L++++  + K  + +    +  +  + E+I++ L         +   I   + +  
Sbjct: 430 ILKLLDIKMARILKFNKDKADENIARIKEQIEEINNHLAH------IVEYTIDWYQMLKD 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKQYPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTTLKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +   +
Sbjct: 529 DEFI---ANCSDIDDVIIFYKDGKYKVVRVTD 557


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 154/570 (27%), Positives = 256/570 (44%), Gaps = 68/570 (11%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            NV AVS  +     +L YA   I ERA+P   DGFKPV RRI+HAM EM       F K
Sbjct: 23  HNVIAVSGMYE--NWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEMD---DGRFNK 77

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A I+G+ +   HPHGD S+ DS+V + Q       LI  QGN+G+I  GDS+AA RY E
Sbjct: 78  VANIIGQTMQ-YHPHGDASIGDSIVNMGQKD----ILIETQGNWGDIRTGDSSAAPRYIE 132

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           AR+++ A  ++   +    +++ +Y+    EPV  P KFP LLA G  GIAVG++T I  
Sbjct: 133 ARLSKFALDVVF--NPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLSTKILP 190

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A + ++ N +I         I PDFPTGG+   S       Y  G  G ++R
Sbjct: 191 HNFCELIKACIDVLKNKKIE--------IYPDFPTGGMADFSE------YNQGLRGGKIR 236

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            R  +EE       +++  IP+    + LIE I +    K    ++ + D +A+DV I +
Sbjct: 237 VRAKIEEGE--KRTLLIKNIPFGTTTTGLIESIIKA-NDKGKIKVKKVVDNTAKDVEIEV 293

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR----- 368
                   PD+ +++++  +D E     N  V+   +    +P++ ILK+ +        
Sbjct: 294 QL-AAGQSPDITIDALYAFTDCEISISPNACVIIEDKPI-FLPVNEILKKNVEDTLGLLE 351

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI------IAIIRNEDKPKPVMVSRFS 422
           RE+  RR     + +   +E +      Y NI+E       +  I    +P      R  
Sbjct: 352 RELEIRRGELMEKILFSSLEKIFIENRIYRNIEECETWEAVLETIDKGLEPFKPQFYR-E 410

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           +T++ +  +  ++++ + K ++++    +  L  E  +++  L +            + +
Sbjct: 411 ITQDDIIRLTEIKIKRISKFDKFKADELMRKLEDELAQVEHHLKN---LTEYAIDYYKGL 467

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
            E + K    G+ R T  E+   D           + + V     G+I            
Sbjct: 468 LEKYGK----GKERKT--EIKSFDNIQAHTVAANNQKLFVNR-QEGFI-----------G 509

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
              K+ + +         D ++    DG  
Sbjct: 510 YGMKKDEFVTD---CSDLDDVIAFKRDGTY 536


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 136/573 (23%), Positives = 253/573 (44%), Gaps = 64/573 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S+     +  + +    I  RAIP + DG KPV RR++++M  M       + K A +VG
Sbjct: 45  SIGGMFYKWQMDFGSYIILNRAIPHINDGLKPVQRRVLYSMRRME---DGRYNKVANVVG 101

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
             +   HPHGD S+Y +LV L Q    +  LI  QGN+GNI  GD AAA RY EAR+++ 
Sbjct: 102 HTMQ-FHPHGDSSIYGALVGLGQ----KNILIDTQGNWGNILTGDPAAAARYIEARLSRF 156

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +   +    +++ +Y+  + EPV  P KFP LLA G+ GI  G+ T I  HN  E+
Sbjct: 157 ALDTVF--NPKTTEWKPSYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNEL 214

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +  +           E+ + PDFPTGG+I  SR      Y  G  G +V  R  + 
Sbjct: 215 IDATILYLQGK--------EFCLYPDFPTGGMIDVSR------YNDGERGGKVMMRVNIT 260

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++  +PY +  ++LIE I +     +I  ++ I D +AE V I+L  + ++
Sbjct: 261 KSADNK-SLIINNVPYGLDTAKLIESIIQANEKGKIN-IKKIDDNTAEGVEIILHLEAKT 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
              D  +++++  +D +T++  N  V+   + P  + +  +L+    +     R+E+   
Sbjct: 319 -SLDKTIDALYAFTDCQTQYSPNCCVIDNNK-PVFVTVSEVLRRSADNTVGLLRKELDIE 376

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLN--------IDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           R     Q +   +E +      Y +         D  +  I    +P      R  +T +
Sbjct: 377 RHELSEQLLFASLEKIFIEERIYKDPEFENAKSEDIALKHIDRRIEPYKKDFVRT-VTRD 435

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +  +L++R+  + K    + ++ +  +    E++        +  N I   I+  + + 
Sbjct: 436 DLRKLLDIRMARILKFNTDKAEANIAAIRGAIEEV------DYKLDNIIEHSIKWFEYLK 489

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                  +R+T   E+   +     + +   E + V     G++             + K
Sbjct: 490 KTYGKNYQRQT---EIRSFENIEATKVVEANEKLYVSR-KEGFV-----------GTNLK 534

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + + ++   +    D +++   DGK   +    
Sbjct: 535 KEEDIEFVQNCSDIDDVIVFFKDGKYKVVKISE 567


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 138/512 (26%), Positives = 246/512 (48%), Gaps = 54/512 (10%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  +L YA   I ERA+P + DG KPV RRI+HA+ EM       F K A ++G+ +   
Sbjct: 57  ENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVANVIGQTMQ-F 112

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ ++LV + Q  +    L   QG++G++  GD AAA RY E R+++ A+  + 
Sbjct: 113 HPHGDASIGEALVNIGQKEL----LFDTQGSWGDVRTGDGAAAPRYIEVRLSKFAQDAI- 167

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++   +++ +Y+    EP+  P KFP LLA G  GIAVG++T I  HN  E+ +A++ 
Sbjct: 168 -YNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFNELIDASIN 226

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++ +  +S        + PDF TGG+I       V +Y  G  G +VR R  +EEV +  
Sbjct: 227 ILKDKPVS--------LFPDFQTGGLID------VSNYNDGHRGGKVRVRAKIEEVDKK- 271

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR------DESAEDVRIVLFPKNRS 319
             + + ++PY V  S+LI+ I +     +I +    R      D +A+DV I++      
Sbjct: 272 -ILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEILVHL-QPG 329

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-----RREVLFR 374
           + PD+ +++++  +D E     N  V+   +    + +  IL+          +RE+  R
Sbjct: 330 VSPDVTIDALYAFTDCEVSISPNACVIIGDKPH-FVSVTDILRVNTHQTVHLLQRELEIR 388

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDE------IIAIIRNEDKPKPVMVSRFSLTENQV 428
           RS    + +   +E +      Y  I+E      ++  I    KP   +  R  +T++ +
Sbjct: 389 RSELMERLLYSSLEKIFIENRIYRKIEECETFEAVLEAIDKALKPHKKLFYRV-ITQDDL 447

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             +  ++++ + K + ++ +  +  L  E  + +  L +  +        I   K++  K
Sbjct: 448 IRLTEIKIKRISKYDGFKAEELMRRLEQELAETEDNLANITRFA------IAYYKDLQKK 501

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
               GR R T         A++  A  +K  +
Sbjct: 502 YGK-GRERKTEIRAFNTIAASVVAAANQKLYV 532


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 243/572 (42%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGE--------EFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + E+P+      + + I +     +I  +  + D ++E V I++      +
Sbjct: 256 IDNK--TLSIAEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISPNCCVIDEKKPH-FLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                +       N D     I     P      R  +T+  
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEVKFEQSENTDAACEFIDERLTPFYPQFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L++++  + K  + +    +  +  + E+I++ L         +   I   + +  
Sbjct: 430 ILKLLDIKMARILKFNKDKADENIARIKEQIEEINNHLAH------IVEYTIDWYQMLKD 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKQYPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTALKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +   +
Sbjct: 529 DEFI---ANCSDIDDVIIFYKDGKYKVVRVTD 557


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/218 (44%), Positives = 148/218 (67%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEARM+++A  IL+ + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP H + E+ E  LA+ +NPEI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +EE   G   I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +
Sbjct: 120 FITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  +  +++ +++  + ++T F +N+  L
Sbjct: 180 GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/532 (27%), Positives = 241/532 (45%), Gaps = 47/532 (8%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           +N   L  E  +   L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M  
Sbjct: 43  NNLMGLFMETAQYGELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD- 101

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDS 125
                F K A +VGE   KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD 
Sbjct: 102 --DGRFHKVANVVGE-TMKLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDG 154

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           A+A RY E R++ +A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAV
Sbjct: 155 ASAPRYIECRLSPLARETMF--NKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAV 212

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           GMAT I  HN  E+  A+  ++              + PDFP GG++  S       Y  
Sbjct: 213 GMATKIMPHNFGELLTASKQILREEPFE--------LFPDFPQGGLLDASG------YED 258

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
           G G  R RAR  +E   R    IV+ +IPY      LIE + +   A +  +L  I D +
Sbjct: 259 GNGRLRCRAR--IET--RDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKILS-IDDYT 313

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           AEDV I +    R    +  +++++  +D E     N  V+   + P +M +  +L+E  
Sbjct: 314 AEDVEIEI-KLARGFKAEETIKALYAFTDCEIPISPNFTVI-REQTPAIMTVSEVLRENT 371

Query: 366 AHRREVLF--------RRSSFRMQAIDRRVEILKGL---LIAYLNIDEIIAIIRNEDKPK 414
           A  R++L         R        +  ++ I + L   +    ++  ++  I    KP 
Sbjct: 372 ARLRQLLKKELELDLARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALKPF 431

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + R  ++   ++ +L +R++ + + +  + K E+  +  +   ++  L         
Sbjct: 432 AAELVRP-VSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LTAY 487

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
               + ++ + + +        T+F EV  +  A    ++        + + 
Sbjct: 488 AIRFLDDLLKRYGQQYPRRTELTSFKEVQASQVALSNLSLAYDPESGFLGTQ 539


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/181 (53%), Positives = 131/181 (72%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V ++  ++  Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
            E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D AAA RYTEAR+T +
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT++P HN++E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 200 C 200
            
Sbjct: 181 A 181


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 116/213 (54%), Positives = 155/213 (72%), Gaps = 1/213 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRI++A  E G  +   + KSAR V +V+GK HPHGD S+YD+LVR+AQ +  R PL
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           I GQGNFG+IDGD  AA RYTE+R+T+VA  +L+ +D+D VDF++TY+  D+EP V P++
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 172 FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           FPNLL NG+ GIAVGMAT+IP HN+ E+C  A+A+IDNP I +  L+E I GPDFPTGGI
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           ++  R  I  +Y  GRG   +R +  +E+ G  
Sbjct: 181 VL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/192 (53%), Positives = 150/192 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHG+ +VY
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
             ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 216 KLLEYIIGPDFP 227
            L++++ GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 243/572 (42%), Gaps = 68/572 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    +  +L YA   I ERA+P + DG KPV RRI+H+M  +       + K A IVG 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 96

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+ D+LV+L Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++   +    +++ +Y+  + EP+  P KFP LLA G  GIAVG+++ I  HN  E+C
Sbjct: 152 LDVVF--NPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A++A +           E+ + PDF TGG I  SR      Y  G  G  V+ R  + +
Sbjct: 210 DASIAYLRGE--------EFKLYPDFQTGGSIDVSR------YNDGERGGMVKVRAKINK 255

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + + E+P+      + + I +     +I  +  + D ++E V I++      +
Sbjct: 256 IDNK--TLSIAEVPFGKTVPGVCDSIVKASEKGKIK-IRKVEDLTSEKVEILVHLAP-GV 311

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+   +    + +  +LK+   +   +L +      
Sbjct: 312 SSDKTLDALYAFTDCEVSISPNCCVIDEKKPH-FLTVSAVLKKATDNTLSLLRQELEIHK 370

Query: 381 QAIDRRVE-------------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +   +                +       N D     I     P      R  +T+  
Sbjct: 371 GELLENLHFASLEKIFIEERIYKEVKFEQSENTDAACEFIDERLTPFYPQFIR-EVTKED 429

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  +L++++  + K  + +    +  +  + E+I++ L         +   I   + +  
Sbjct: 430 ILKLLDIKMARILKFNKDKADENITRIKEQIEEINNHLAH------IVEYTIDWYQMLKD 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RRT   E+   D     + +   E + +     G+I               K+
Sbjct: 484 KYGKQYPRRT---ELRNFDTIEAAKVVEANEKLYINR-EEGFI-----------GTALKK 528

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
            + +    +    D +++   DGK   +   +
Sbjct: 529 DEFI---ANCSDIDDVIIFYKDGKYKVVRVTD 557


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 97/186 (52%), Positives = 138/186 (74%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ AM E+G D+  A+KKSA
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            ++   +L  +++D V++ D Y+  +  P V P++ PNLL NG +GIAVGMAT++  HN+
Sbjct: 126 RKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPHNM 185

Query: 197 QEICEA 202
            E+  A
Sbjct: 186 TEVVNA 191



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 28/169 (16%)

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLL 671
            + + ++ G    VE  +       G   +++  E+ +  V    G+  + +     K +
Sbjct: 389 YVFMATASGTVKRVELEQFGNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAI 448

Query: 672 IFSIDQIPEMSR-GKGVRLQSYKDGGISD--------------------------VICFK 704
            FS      M R  KGVR                                     V    
Sbjct: 449 RFSETDARVMGRTAKGVRGMRVALAAAQTEEDVEVDVDSDDEDTADSNTNVVSRIVSLVV 508

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
           + E    + ++   Y +          KRGG G +  K   R+G+ + +
Sbjct: 509 VPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGA 557



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 99/363 (27%), Gaps = 66/363 (18%)

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +R+R L           L +L  +  + +   +  ++    +   I  +         +
Sbjct: 122 EVRMRKLT-------HEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAV 174

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544
           G                +   +I +E + + +S  G+ ++         +      SA  
Sbjct: 175 GMATNM---APHNMTEVVNAYLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATS 231

Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602
            KE D ++  +       +L  +  GK Y L    +   S    G  +  L+ L+  + I
Sbjct: 232 MKEDDYIQHLIVTSNHATVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLDAEETI 291

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIV-------------------------------EESEI 631
                     K    + +   F                                    ++
Sbjct: 292 TAILPVIDAPKKF--TERLTEFRTFVRANVAQLRENTIIDSHYEALKAAFAELGENPDDL 349

Query: 632 IANTRK-----GKTFLKVSSEEKMKL-----VVKVTGD-HVAVVGENRKLLIFSIDQIPE 680
               RK     G        ++++       V  V  + +V +   +  +    ++Q   
Sbjct: 350 SDALRKQLKEIGIELSASDLDDELIAEFAERVESVRKNFYVFMATASGTVKRVELEQFGN 409

Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
           + R  G+R    K+      +     E    + S         ++    +  R   G   
Sbjct: 410 V-RSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNE-GKAIRFSETDARVMGRTAKGVRG 467

Query: 741 PKG 743
            + 
Sbjct: 468 MRV 470



 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 59/292 (20%)

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E   I S  + L A   ++     +     + +  +++E+                    
Sbjct: 324 ENTIIDSHYEALKAAFAELGE---NPDDLSDALRKQLKEIG--------------IELSA 366

Query: 503 SRADKATLQQAMIEKEPI-----TVVISNRGWIRSL------KSHSVDLSALHFKEGDSL 551
           S  D   + +     E +       + +  G ++ +         S  L A+  KE D+L
Sbjct: 367 SDLDDELIAEFAERVESVRKNFYVFMATASGTVKRVELEQFGNVRSNGLRAIELKEEDTL 426

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA--GNLLSGRGHGEAIQLLI--------------- 594
                     +I+L S +GKA         ++     G     +                
Sbjct: 427 IGVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVALAAAQTEEDVEVDVD 486

Query: 595 ---------DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
                    + N    IV+  V   T ++L  S+ G        +     R GK  + + 
Sbjct: 487 SDDEDTADSNTNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIK 546

Query: 646 ----SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY 692
               + E +  V       + ++ +   L+     ++    R  +GVRL   
Sbjct: 547 TSERNGELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRL 598


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 137/176 (77%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 142/518 (27%), Positives = 236/518 (45%), Gaps = 47/518 (9%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +E +L Y    I+ERAIPDL DG KPV RRI+  +  M       F K A +VG
Sbjct: 8   ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           E   KLHPHGD S++ +LV LA     +  LI  QGNFGN+  GD A+A RY E R++ +
Sbjct: 65  E-TMKLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 119

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   +   +++  +F D+Y+    EPV  P++ P LL  G  GIAVGMAT I  HN  E+
Sbjct: 120 ARETMF--NKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 177

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A+  ++              + PDFP GG++  S       Y  G G  R RAR  +E
Sbjct: 178 LTASKQILREEPFE--------LFPDFPQGGLLDASG------YEDGNGRLRCRAR--IE 221

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
              R    IV+ +IPY      LIE + +   A +  +L  I D +AEDV I +    R 
Sbjct: 222 T--RDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKILS-IDDYTAEDVEIEI-KLARG 277

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF------ 373
              +  +++++  +D E     N  V+   + P +M +  +L+E  A  R++L       
Sbjct: 278 FKAEETIKALYAFTDCEIPISPNFTVI-REQTPAIMTVSEVLRENTARLRQLLKKELELD 336

Query: 374 --RRSSFRMQAIDRRVEILKGL---LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
             R        +  ++ I + L   +    ++  ++  I    KP    + R  ++   +
Sbjct: 337 LARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALKPFAAELVRP-VSREDL 395

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L +R++ + + +  + K E+  +  +   ++  L             + ++ + + +
Sbjct: 396 ERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LTAYAIRFLDDLLKRYGQ 452

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   T+F EV  +  A    ++        + + 
Sbjct: 453 QYPRRTELTSFKEVQASQVALSNLSLAYDPESGFLGTQ 490


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 166/734 (22%), Positives = 299/734 (40%), Gaps = 99/734 (13%)

Query: 6   ISNSNTLV---EENVKA-VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
           +S  N L    ++N+   V +    ++ +L YA   I ERA+P + DG KPV RRI+HAM
Sbjct: 1   MSEENDLPKNGDDNLHDTVPVSGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRIMHAM 60

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            EM       F K A I+G+ +   HPHGD S+ D++V L Q  +    LI  QGN+G+I
Sbjct: 61  KEMD---DGRFNKVANIIGQSMQ-YHPHGDASIGDAIVNLGQKDL----LIETQGNWGDI 112

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             GD AAA RY EAR+++ A  ++   +    +++ +Y+    EP+  P KFP LLA G 
Sbjct: 113 RTGDRAAAARYIEARLSKFALEVVF--NPQTTEWQLSYDGRKREPITLPVKFPLLLAQGV 170

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GIAVG++T I  HN  E+ E ++ ++   + ++         PDF TGG+   S     
Sbjct: 171 EGIAVGLSTKILPHNFCELIEGSIEILKGNKTNV--------LPDFLTGGLADFSE---- 218

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
             Y  G+ G +V+ R  +EE       I++ EIP+      LI+ I +    K    ++ 
Sbjct: 219 --YNGGQRGGKVKVRAKIEEEDSK--TILIKEIPFGTTTDSLIDSILKA-NDKGKIKIKK 273

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           + D +A+DV I +      + PD+ +++++  +D E     N  V+   + P  + ++ I
Sbjct: 274 VVDNTAKDVEIAVHLAP-GISPDVTIDALYAFTDCEVSISPNACVIIDEK-PVFLDVNDI 331

Query: 361 LKEWLAHRREVLFRRSSFR------------MQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           L       R +L +    R            ++ I     I + +        E++  I 
Sbjct: 332 LTYNTKQTRALLKKELEIRKAELMEKLLFSSLEKIFIENRIYRDIEECTTW-QEVLEAID 390

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
               P      R  + E+ V  +  +R++ + K + ++    +  L  E ++++    + 
Sbjct: 391 KGLDPYKPDFYREIVEEDLVK-LTEIRIKRISKFDSFKADELMKRLQDELKEVNY---NL 446

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
           +   +        +   + K    G+ R T        +A++  A   K  +       G
Sbjct: 447 RHLTDYAIKYYESLLTKYGK----GKERKTEIRAFDTIQASVVAANNAKLYVN---RKDG 499

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           ++               K+ + +         D I+++  DG         +      G+
Sbjct: 500 FV-----------GTSLKKDEFVCD---CSDLDDIIVIRKDGICM---VSKIQEKNFMGK 542

Query: 589 AIQLLIDLNH-NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--- 644
            I  +      ++ +V   +Y        +  +     V   +    T+  K    +   
Sbjct: 543 DILHVAVFRKGDERMVYNLIYLDGGTGRAMVKRFQVLAVTRDKEYNLTKGSKGSKTLYLT 602

Query: 645 ---SSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKG--------VRLQS 691
              + E ++  V    G          ++ +F  D   I    RG G        +R   
Sbjct: 603 ANSNGEAEIVTVYLTQG-------AKARVKVFDFDFATIDIKGRGAGGNILTKYPIRKIQ 655

Query: 692 YKDGGISDVICFKI 705
            K  G+S +    I
Sbjct: 656 LKMEGVSTLGGLDI 669


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 132/541 (24%), Positives = 231/541 (42%), Gaps = 47/541 (8%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +   ++ YA   IK+RAIPD+ DG KPV RRI+H + +        F K A IVG 
Sbjct: 33  LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGA 89

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
                HPHGD S+Y +LV +A     +   I  QGNFGNI  GD+A+A RY E R++ +A
Sbjct: 90  -CMAYHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
              L   + +  +F D+Y+  + EPV  P+K P LL  GT GIAVGMAT I  HN  E+ 
Sbjct: 145 RETLF--NTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A + ++              I PDF  GGI+  S+      Y  GRG   VRA+  +  
Sbjct: 203 KAQIKILRGQRFE--------IYPDFLCGGIMDISQ------YDFGRGKVTVRAKIDI-- 246

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
               +  +V+ ++        L+  I E     +I  +  I+D +AE V I +    R +
Sbjct: 247 --LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDYTAEHVEIEINL-PRGV 302

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  + +++  +  E     N+ V+  GR  ++  +  +L         +L        
Sbjct: 303 QADWALNALYAFTQCEVSLSPNITVIQRGRPKEIH-VGEVLHHNTQTLVNILRWELLNEQ 361

Query: 381 QAIDRRVE-----------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             ++ +              +   +    +  E+   +R+  KP  +   R  +++  ++
Sbjct: 362 NKLNEKYHDRTLERIFIEERIYKKIEECTSQSEVFEAVRSGLKPF-LDQLRRDVSDEDIE 420

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            +L + +R +   +  +   EL+ +L   + +  +  + +   +     I+ +   + K 
Sbjct: 421 RLLRIPIRRISLFDINKNNKELEEIL---KALKEVAYNLEHLKDYTINFIKNLISKYGKQ 477

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
                   +  +V   + A     +   +    + +       +K    D   +  K+G 
Sbjct: 478 YPRLTEIKSIEKVDAKEIAVANVKLGYDKVGGYIGTQINNGNHIKCTEFDRIIILTKDGK 537

Query: 550 S 550
            
Sbjct: 538 F 538


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 256/588 (43%), Gaps = 67/588 (11%)

Query: 4   DNISNSNTLVEENVKAVS-LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
           +  S++     E V+ ++ +    +E +L YA   I ERA+P L DG KPV RRI+H+M 
Sbjct: 18  EEQSDTENDQTETVETITKITGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMK 77

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI- 121
           ++       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI 
Sbjct: 78  DLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQKEL----LIDMQGNWGNIL 129

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GD AAA RY EAR+++ A  ++   +     ++ +Y+    EP+  P KFP LLA G  
Sbjct: 130 TGDRAAASRYIEARLSKFALDVVF--NSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAE 187

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVG++T +  HN  E+ +A++  +            + I PDF TGGI   +      
Sbjct: 188 GIAVGLSTKVLPHNFIELIDASMKYLKGRS--------FKILPDFITGGIADFTN----- 234

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
            Y  G  G +VR R  + ++ +    +V+ EIP+    + LI+ I +    K    ++ I
Sbjct: 235 -YNDGVRGGKVRVRARIAQLDKK--TLVINEIPFGTTTTTLIDSIIKA-NEKGKIKIKKI 290

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D +A +V I++     ++ PD  +++++  +  E         +   + P  + +  +L
Sbjct: 291 EDNTAAEVEILVHLPP-NVSPDKTIDALYAFTSCENSISPLSCTIEDNK-PVFVGVSEML 348

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL-----IAYLNIDE------IIAIIRNE 410
           K       ++L +    ++  ++ +               Y +I+E      ++  I   
Sbjct: 349 KHSTDLTVDLLKKELEIQLNELEEQWHFSSLERIFIENRIYRDIEEEETWEGVLNAINLG 408

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +P    + R  + E+    +  +R++ + K +  + K  ++ L A+   + + L +   
Sbjct: 409 LQPHIKHLKRAIVEEDIAR-LTEIRIKKISKFDIDKAKQFIEGLEAKIAIVTAHLAN--- 464

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +        +    +   G+ R T  EV   D     +  +    + V     G+I
Sbjct: 465 ----LIEFAIAYFKRLKDTYGAGKERKT--EVRTFDDIIASKVAMNNVKLYVNR-EEGFI 517

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
                          K+ + +         D I++   DGK     A 
Sbjct: 518 -----------GTTLKKDEFVTD---CSDIDDIIIFRKDGKMMVTKAA 551


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 139/589 (23%), Positives = 256/589 (43%), Gaps = 70/589 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN   + T   +++  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E
Sbjct: 3   DNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 61  LD---DGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILT 112

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT G
Sbjct: 113 GDDAAAPRYIEARLSKFALDVVF--SPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEG 170

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ EA++A + N            + PDFPT GI+       V  
Sbjct: 171 IAVGLSTKILPHNFIELIEASIAYLKNKPFE--------LYPDFPTAGIMD------VSG 216

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G RVR R  + ++ +    + +TEIP+    + LI+ I +     +I  ++ + 
Sbjct: 217 YNDGARGGRVRVRAKISQLDKS--TLCITEIPFTTTTTSLIDSILKANEKGKIK-IKKVD 273

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I++   N    PD  +++++  +  ET       V+   +    + +  +L+
Sbjct: 274 DNTAANVEILVHLPN-GTSPDKTIDALYAFTACETAISPITCVIEDNKPH-FLTVSEVLR 331

Query: 363 EWLAHRREVLFRRSSFR------------MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
                   +L +                 ++ I  R E+       Y + + +   +   
Sbjct: 332 RSTDRTVSLLKQELEIELSELEMQWHSASLEKIFIREEMYIDFKN-YTDRESLYEYLYQR 390

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +P    + R    ++    +  + +  + + + Y+    +  + A+ E++ + L +   
Sbjct: 391 FEPFKKDLIREITDDDLAK-LTQIPMIRITRFDSYKADENILKIEADIEEVKNHLAN--- 446

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             +        +K+ + K    GR R T   V            IE   + V  +     
Sbjct: 447 LIDYAISHFERLKKTYGK----GRERKTEMRVF---------DTIEATKVVVRNT----- 488

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +   + +        ++ + +         D +++ +  G  Y     +
Sbjct: 489 KLYVNRAEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGAMYVTKVSD 534


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 101/176 (57%), Positives = 137/176 (77%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 152/620 (24%), Positives = 262/620 (42%), Gaps = 74/620 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            ++  ++  Y+ YA   I +RAIP++ DG KPV RRI++ +    L       K A + G
Sbjct: 3   DIKQLMQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLW---LMHDGKLHKVANVAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQV 139
           + +  LHPHGD  + ++L+ +A     +  L+  QGNFGN+  GD AAA RY E R+T +
Sbjct: 60  QTMA-LHPHGDAPITEALINIA----NKGYLLDQQGNFGNLFTGDPAAAARYIETRLTPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D      +Y+    EP   P+K P +L  G  GIAVGM+T I  HN  E+
Sbjct: 115 AKETLF--NADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A+++    S        I PDFPTGGI+  S       Y  G+G  R+RA+  V 
Sbjct: 173 LEAEIAILEGKPFS--------ILPDFPTGGIMDASD------YNKGKGKVRLRAKIEV- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
              R +  +V+TEI Y      LI  I E     +I  ++ I D +AE V I +    R 
Sbjct: 218 ---RDAKSLVITEICYGTTTESLIRSIDEAAKKGKIK-IDAINDYTAEKVEIEI-KLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                L+E+++  ++ +      + V+     P    +D IL+      +E L R     
Sbjct: 273 QYAQDLLEALYAYTECQVTLHSQIVVIKDNY-PWETDVDSILRLHTEKLQEYLQRELELE 331

Query: 380 --------MQAIDRRVEILKGLLIAYLNI---DEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                    +    ++ I   L     ++   +E+   I     P    + R   TE   
Sbjct: 332 RDHLNEKIFEKTLEQIFIENRLYKRIEDLTSYEEVHVTIAASLIPFHSQLLRIP-TEQDR 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L++ +R + + +   +    + +L+ +E++  +    K   N I   IR +  +  K
Sbjct: 391 ERLLSIPIRRITRFD---LAKNQEEILSHQEQLTRV---EKDLKNIIKVAIRYLNSLIKK 444

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
                +R+T    + + D     +AM  ++         G+I +  + +           
Sbjct: 445 FASEHKRKTEIQVIQQVD----TRAMETRQITVCFDPTTGFIGTKVTSNY---------- 490

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
                 +     D++L++  DG    +           G  +   + +   + I+     
Sbjct: 491 -----TIECTNFDKLLVIFKDGTYQIINIPEKQYVHHKGNKVV-YVGIADKKTIINVVYR 544

Query: 609 DSTCKLLVVSSKGNAFIVEE 628
           D     +        FIVE+
Sbjct: 545 DPETHYVYAKR----FIVEK 560


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIA 292
           TE+PYQV  ++LIEKIA+L+  
Sbjct: 180 TELPYQVNXAKLIEKIADLVRD 201


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 138/589 (23%), Positives = 255/589 (43%), Gaps = 70/589 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           DN   + T   +++  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E
Sbjct: 3   DNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 61  LD---DGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILT 112

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT G
Sbjct: 113 GDDAAAPRYIEARLSKFALDVVF--SPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEG 170

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ EA++A +              + PDFPT GI+       V  
Sbjct: 171 IAVGLSTKILPHNFIELIEASIAYLKKKPFE--------LYPDFPTAGIMD------VSG 216

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G RVR R  + ++ +    + +TEIP+    + LI+ I +     +I  ++ + 
Sbjct: 217 YNDGARGGRVRVRAKISQLDKS--TLCITEIPFTTTTTSLIDSILKANEKGKIK-IKKVD 273

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I++   N    PD  +++++  +  ET       V+   +    + +  +L+
Sbjct: 274 DNTAANVEILVHLPN-GTSPDKTIDALYAFTACETAISPITCVIEDNKPH-FLTVSEVLR 331

Query: 363 EWLAHRREVLFRRSSFR------------MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
                   +L +                 ++ I  R E+       Y + + +   +   
Sbjct: 332 RSTDRTVSLLKQELEIELSELEMQWHSASLEKIFIREEMYIDFKN-YTDRESLYEYLYQR 390

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +P    + R    ++    +  + +  + + + Y+    +  + A+ E++ + L +   
Sbjct: 391 FEPFKKDLIREITDDDLAK-LTQIPMIRITRFDSYKADENILKIEADIEEVKNHLAN--- 446

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
             +        +K+ + K    GR R T   V            IE   + V  +     
Sbjct: 447 LIDYAISHFERLKKTYGK----GRERKTEMRVF---------DTIEATKVVVRNT----- 488

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +   + +        ++ + +         D +++ +  G  Y     +
Sbjct: 489 KLYVNRAEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGAMYVTKVSD 534


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 217/461 (47%), Gaps = 44/461 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +       +L YA   I++RAIPD+ DG KPV RRI+H++ EM       F K A +VG 
Sbjct: 4   VESLFNTNFLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEMD---DGKFHKVANVVG- 59

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
              K HPHGD S+ ++L  LA   +     I  QGNFGN+  GD A+A RY E R+T+ A
Sbjct: 60  YCMKYHPHGDASIGNALTVLANKSL----FIDKQGNFGNLFTGDEASAPRYIECRITEFA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + IL   +     +  +Y+  + EPVVF +K P +L  G  GIAVGM+T I  HN++EI 
Sbjct: 116 KDILF--NPHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREII 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA    +     +        + PDF TGG+I  S       Y+ G+G   VRA+    +
Sbjct: 174 EAEKDCLSGKSFT--------LYPDFQTGGLIDVSE------YQDGKGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    IV+ E+P+      LI  I     + ++  + +I D +AE V I L    R +
Sbjct: 220 DKR----IVIRELPFGSTTESLIASIESASKSGKVK-ISEINDYTAEQVEIEL-KLPRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               ++++++  +D E     N+ V+    +P    +  ++K        +L     +  
Sbjct: 274 YASDVVDALYAFTDCEQSISCNLLVIQDN-LPVQTSVTEVIKTHAKQLTALLKDELMYEQ 332

Query: 381 QAIDRRVEIL-----------KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           + +  R+ +               +      + +I  +    +P    + R  +TE  VD
Sbjct: 333 EMLTDRLHLRTLERIFIEERIYKKIETMKTAESVIKAVIKGFEPFKAELIR-EVTEEDVD 391

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +L + +R +   +  + ++E+  + A  ++I  LL + K+
Sbjct: 392 RLLKIPIRRISLYDIQKNRAEVQEISARLKEIARLLKNLKK 432


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 102/191 (53%), Positives = 149/191 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +V
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +  ++E   EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S+
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 215 EKLLEYIIGPD 225
           + L++++ GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/188 (57%), Positives = 146/188 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +V D++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    LA ID+ +I
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 213 SIEKLLEY 220
           SIE L+E+
Sbjct: 181 SIEGLMEH 188


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 151/223 (67%), Gaps = 1/223 (0%)

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            GDS++A RYTEARM++++  IL+ + +D +D++D Y   + EP V PS+FPNLL NG +
Sbjct: 1   TGDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAA 60

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIAVGMAT+IP H + EI +  LA+ +NP+I+I +L+E I GPDFPT G I+  R  I +
Sbjct: 61  GIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRK 119

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           +Y  GRG   +RA+  +E+   G   I+VTE+PYQV K++LIEKIA+L+  K+I  + D+
Sbjct: 120 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 179

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           RDES      ++    R  + ++++ +++  + ++T F +++ 
Sbjct: 180 RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIHLL 222


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIA 292
           TE+PYQV  ++LIEKIA+L+  
Sbjct: 180 TELPYQVNXAKLIEKIADLVXD 201


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 160/635 (25%), Positives = 276/635 (43%), Gaps = 71/635 (11%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L    E  +L Y    I+ERAIP + DG KPV RRI+  +  M       F K A +VGE
Sbjct: 8   LHQLFEYNFLEYTSYVIRERAIPAIDDGLKPVQRRILQTLFNME---DGRFHKVANLVGE 64

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
              KLHPHGD S++ +LV LA     +  LI  QGNFGNI  GDSA+A RY E R++ +A
Sbjct: 65  -TMKLHPHGDASIFSALVNLA----NKGFLIERQGNFGNIFTGDSASAPRYIECRLSPLA 119

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L   ++D  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  HN  E+ 
Sbjct: 120 KEVLF--NKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELL 177

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A  A++ +         E+ + PDFP GG++       V  Y  G G  + RAR  + E
Sbjct: 178 QAQKAVLLDE--------EFTLYPDFPQGGLVD------VSGYEDGNGKIKCRAR--IRE 221

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      I++ EIPY      L + I +   A +I ++  I D +AE V I +    R +
Sbjct: 222 L--NEKTIIIDEIPYSTTTQSLTDSIEKAAKAGKIKIIS-INDYTAEKVEIEI-KVARGI 277

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
                +++++  +D E     N+ ++  G+ P    +  +++      +  L +     +
Sbjct: 278 YAKDTIKALYAFTDCEVPISPNLTLI-KGKTPATSSVREVIEYNTLKLKADLTKELEINL 336

Query: 381 QAIDRRVE--ILKGLLIA---YLNIDEI---IAIIRNEDKPKPVMVSR--FSLTENQVDA 430
             ++ ++   +L+ + I    Y NI+E     +I+ + D       S     +TE  V  
Sbjct: 337 ARLEEKLHARLLEQIFIEQRLYKNIEEETSYESIMASVDTALIPFRSELFRDVTEEDVTR 396

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L +R++ + + +  +   E+  +  + + I           + +A  I  + ++ +K  
Sbjct: 397 LLEIRIKRISRFDINKQDKEIRAIRKDIKAIKI------SLKDMVAFTIASIDKLLAKYG 450

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
           +   R+T   + S      +  +      +TV  S                    K  + 
Sbjct: 451 ENYPRKTEIKQFSEVVVRKIALS-----NLTVGYSR----------ETGFLGHSVKGEEE 495

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609
              ++     DR+ L+ +DG+   +P    + +G          I +  ++ +      D
Sbjct: 496 EDFSVTCSEYDRLFLIYSDGRYKVIPVTDKVFAGTD-----LKYIGIVPSEQVFNIVYRD 550

Query: 610 STCKLLVVSSKGNAFIV--EESEIIANTRKGKTFL 642
                  V        +  +E  +    ++ K  L
Sbjct: 551 GNENFAYVKRFNTPKFILEKEYHLFPEHKRSKILL 585


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ + S+E+++++I GP
Sbjct: 181 DSKDASLEEIMQFIKGP 197


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/187 (52%), Positives = 143/187 (76%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG++DGD AAA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTE 125

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           ARM++++  +L+ +++D +D+ D Y+  + EPV+ P++FPNLL NG+SGIAVGMAT+IP+
Sbjct: 126 ARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPT 185

Query: 194 HNVQEIC 200
           H++ E+ 
Sbjct: 186 HHLGEVI 192


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/197 (56%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           DN + S+E+++++I GP
Sbjct: 181 DNKDASLEEIMQFIKGP 197


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 148/196 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + + S+E+++++I GP
Sbjct: 182 SKDASLEEIMQFIKGP 197


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 149/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ ++S+E+++++I GP
Sbjct: 181 DSKDVSLEEIMQFIKGP 197


>gi|213865327|ref|ZP_03387446.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 357

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 18/262 (6%)

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHT 559
               + +I +E + V +S++G+++          +      SA   KE D +   L A+T
Sbjct: 6   DINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 65

Query: 560 TDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614
            D IL  S+ G+ Y +    L        G  I  L+ L  N+ I        Y+    +
Sbjct: 66  HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNV 125

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673
            + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F
Sbjct: 126 FMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRF 185

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLG 731
             D +  M R   GVR       G   V+   I  G    +      Y +          
Sbjct: 186 KEDAVRAMGRTATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTK 243

Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753
            R   G +  K   R+G  + +
Sbjct: 244 SRATQGVISIKVTERNGSVVGA 265



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 105 EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 164

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 165 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 223

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 224 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 283

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 284 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 333



 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    +      ++ +S +G       ++  A  R  KGK+  ++  E+   +L+
Sbjct: 2   ANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 61

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685
           V  T D +       +L    + Q+PE SRG 
Sbjct: 62  VANTHDTILCFSSRGRLYWMKVYQLPEASRGA 93


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 99/228 (43%), Positives = 151/228 (66%), Gaps = 2/228 (0%)

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTEA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
           VGMAT+IP HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y 
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYE 119

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
            G+G   VRA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDE
Sbjct: 120 TGKGRIVVRAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDE 178

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           S  +   ++    R  +P++ +  ++  + M+  F + M  L   +  
Sbjct: 179 SDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQ 226


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 149/196 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + ++S+E+++++I GP
Sbjct: 182 SKDVSLEEIMQFIKGP 197


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 136/589 (23%), Positives = 253/589 (42%), Gaps = 70/589 (11%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +N S +     +++  + +    ++ +L YA   I ERA+P + DGFKPV RRI+H++ E
Sbjct: 3   ENTSQNTASQGDSI--IKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 60

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-D 122
           +       + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GNI  
Sbjct: 61  LD---DGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQKDL----LIDTQGNWGNILT 112

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GD AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA GT G
Sbjct: 113 GDDAAAPRYIEARLSKFALDVVF--SPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEG 170

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T I  HN  E+ EA++A +              + PDFPT GI+       V  
Sbjct: 171 IAVGLSTKILPHNFIELIEASIAYLKGKSFE--------LYPDFPTAGIMD------VSG 216

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G  G RVR R  + ++      + +TEIP+    + LI+ I +     +I  ++ + 
Sbjct: 217 YNDGARGGRVRVRAKISQLD--KSTLCITEIPFTTTTTSLIDSILKANEKGKIK-IKKVD 273

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D +A +V I++   N    PD  +++++  +  ET       V+   +    + +  +L+
Sbjct: 274 DNTAANVEILVHLPN-GTSPDKTIDALYAFTACETAISPITCVIEDNKPH-FLTVSEVLR 331

Query: 363 EWLAHRREVLFRRSSFR------------MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
                   +L +                 ++ I  R E+       Y + + +   +   
Sbjct: 332 RSTDRTVNLLKQELEIELSELEMQWHNASLEKIFIREEMYIDFKN-YTDRESLYEYLYKR 390

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +P    + R    ++    +  + +  + + + Y+    +  + A+ E++ + L +   
Sbjct: 391 FEPFKKDLLREITDDDLAK-LTQIPMIRITRFDSYKADENILKIEADIEEVKNHLAN--- 446

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530
               +        E   K+   GR R T   V            IE   + V  +     
Sbjct: 447 ----LIDYAIAHFERLKKTYSKGRERKTEIRVF---------DTIEATKVVVRNT----- 488

Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           +   + +        ++ + +         D +++ +  G  Y     +
Sbjct: 489 KLYVNRAEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGAMYVTKVAD 534


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 110/197 (55%), Positives = 148/197 (75%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ H
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 208 DNPEISIEKLLEYIIGP 224
           D+ + S+E+++++I GP
Sbjct: 181 DSKDTSLEEIMQFIKGP 197


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 108/297 (36%), Positives = 155/297 (52%), Gaps = 40/297 (13%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRG 59

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 60  KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 119

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
           D   ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ H
Sbjct: 120 DGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRH 178

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           RREV+ RR+ F ++    R  IL+ L IA  NID II +IR    P              
Sbjct: 179 RREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDL 238

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                        ++ LTE Q  AIL+LRL+ L  LE  ++
Sbjct: 239 GNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 295


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 110/196 (56%), Positives = 148/196 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIEKLLEYIIGP 224
           + + S+E+++++I GP
Sbjct: 182 SKDTSLEEIMQFIKGP 197


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 174/789 (22%), Positives = 322/789 (40%), Gaps = 122/789 (15%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           D   +             +    ++ +L YA   I ERA+P + DGFKPV RRI+H+M +
Sbjct: 7   DPNLDQPEDENSGETITRVTGMFKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 66

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-ID 122
           +       + K A IVG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GN + 
Sbjct: 67  LD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQMGQKDL----LIDTQGNWGNTLT 118

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           GDSAAA RY EAR+++ A  +L        D++ +Y+    EP+  P KFP LLA G  G
Sbjct: 119 GDSAAASRYIEARLSKFALEVLF--SPKITDWQASYDGRRKEPINLPVKFPLLLAQGAEG 176

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IAVG++T +  HN  E+ +A++  ++          ++ I PDFP+ G    S       
Sbjct: 177 IAVGLSTKVLPHNFVELIDASVKHLEGK--------KFKILPDFPSAGEADFSD------ 222

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G+ G R+R R  + ++ +    +V+TEIP+    + LI+ I +     ++  ++ I 
Sbjct: 223 YKDGKRGGRIRVRAKISQLDKN--TLVITEIPFTTTTTSLIDNILKANDKGKLK-IKRIE 279

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D ++  V I++      L PD  + +++  ++ E        V+   + P  + +  +L+
Sbjct: 280 DNTSSQVEILVHL-PAGLSPDKTIGALYAFTNCEVSISPLGCVIEDNK-PLFVGVSEMLR 337

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNED 411
                 +++L +    +++ ++ +        I   N            D ++  I    
Sbjct: 338 ISTDRTKDLLRQELEIQLEELENQWHYASLERIFIENRIYRDIEEETTWDGVLHAINEGL 397

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           KP    + R  + E  +  +  +R++ + K +  + +  ++ L  +  ++   L   +  
Sbjct: 398 KPHIGHLKRP-VVEEDLVRLTEIRIKRISKFDIDKAQQRIEALEDQIAEVKHHL---EHL 453

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
            +      + +K+ F      GR R T  ++            IE   + +  +     +
Sbjct: 454 TDYAIAYFKRLKKEFG----AGRERKTEIKLF---------DDIEASKVVIRNT-----K 495

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
              +          K+ + +         D I++ + +G                     
Sbjct: 496 LYVNRKEGFVGTSLKKDEYVTD---CADIDDIIVFTKEGVMMVTKVDTKTF--------- 543

Query: 592 LLIDLNHNQDIVTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTR---------- 636
                   +DI+   V+    K     +L    KG A  V+   + + TR          
Sbjct: 544 ------VGKDIIHVAVFKKKDKRTIYNMLYRDGKGGATYVKRFNVTSVTRDREYDMTKGK 597

Query: 637 KGKTFL----KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK-G--- 686
           KG   L      + E ++  V      ++  VG  +K L F +D   I    R   G   
Sbjct: 598 KGSQVLYFSANPNGEAEVVSV------YLRAVGNIKK-LKFDLDFSDILIKGRNANGNLA 650

Query: 687 ----VRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSE---NDLLGWLGKRGGVG 737
               VR    K+ G+S +   KI   + +  ++  GR     E    D L  + + G V 
Sbjct: 651 TKHSVRTIELKEKGVSTLKPRKIWFDDTVQRLNVDGRGELLGEFKGEDRLLIITQDGVVK 710

Query: 738 SLVPKGFPR 746
           ++ P+   R
Sbjct: 711 TITPELTTR 719


>gi|332879118|ref|ZP_08446819.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682918|gb|EGJ55814.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 866

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 135/593 (22%), Positives = 257/593 (43%), Gaps = 70/593 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           M  + +  S     +++  + +    ++ +L YA   I ERA+P + DGFKPV RRI+H+
Sbjct: 1   MEENELQTSAAHPNDSI--IKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 58

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           + E+       + K A +VG  +   HPHGD S+ D++V++ Q  +    LI  QGN+GN
Sbjct: 59  LKELD---DGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQKEL----LIDTQGNWGN 110

Query: 121 -IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            + G  AAA RY EAR+++ A  ++        +++ +Y+    EP+  P KFP LLA G
Sbjct: 111 TLTGADAAAPRYIEARLSKFALDVVF--SPKVTEWQSSYDGRKREPISLPVKFPLLLAQG 168

Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
           T GIAVG++T I  HN  E+ +A++A +              + PDFPT GI+       
Sbjct: 169 TEGIAVGLSTKILPHNFIELIDASVAYLQGKPFE--------LYPDFPTAGIMD------ 214

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
           V  Y  G  G RVR R  + ++      +V+ EIP+      LI+ I +      I  ++
Sbjct: 215 VSGYNDGARGGRVRVRAKISQLD--KSTLVINEIPFTTTTKTLIDSILKANDKGNIK-IK 271

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + D +A DV I++   N S  PD  +++++  +  ET       V+   +    + +  
Sbjct: 272 KVDDNTAADVEILVHLPNGS-SPDKTIDALYAFTACETAISPITCVIEDNKPH-FLTVSE 329

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLL-----IAYLNIDEIIAI 406
           +L+       ++L +     ++ +  +          I + +        Y N + +   
Sbjct: 330 VLRRSTDRTVDILKQELEITLEELHLQWHKASLEKIFIREEMYINFKDKKYKNKELLYQY 389

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           + +  +P    + R  +T++ ++ +  + +  +   + Y+ + ++  + A+ E++ + L 
Sbjct: 390 LYDRFEPFKKDLLR-EITDDDLERLTQIPMIRITNFDTYRAEEQMLKIEADIEEVKNHLA 448

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
                   +        E   K+   GR R T   V            IE   + V  + 
Sbjct: 449 H-------LVDYAIAHFERLKKTYSKGRERKTEIRVF---------DTIEATKVVVRNT- 491

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
               +   + +        ++ + +         D +++ +  G  Y      
Sbjct: 492 ----KLYVNRAEGFVGTGLRKDEYVGD---CSEIDDVIVFTESGAMYVTKVAE 537


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 108/196 (55%), Positives = 148/196 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 2   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 181

Query: 206 LIDNPEISIEKLLEYI 221
           L+D+ + S+E+++++I
Sbjct: 182 LLDSKDASLEEIMQFI 197


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 220/459 (47%), Gaps = 42/459 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +     + +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A +VG 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGH 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
              K HPHGD S+ ++LV LA   +     IS QGNFGNI  GD A+A RY E R+T+  
Sbjct: 61  -CMKYHPHGDASIGNALVVLANKEL----FISKQGNFGNIYTGDEASAARYIECRITEFG 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + +L   + +   +  +Y+  + EP+VF +K P +L  G  GIAVGM+T I  HN++EI 
Sbjct: 116 KSLL--YNPNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEIL 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA        EI   +   + + PDFPTGG+I  S       Y  G G   VRA+    +
Sbjct: 174 EA--------EIQCIEGKPFALYPDFPTGGLIDVSE------YGDGLGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    I++ E+P+      +I  I     + ++  + +I D +AE V I L    R +
Sbjct: 220 EKR----ILIKELPFGSTTESMITSIENASKSGKVK-VSEINDYTAETVEIEL-KLPRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               +++S++  ++ E     N+ V+    +PQ M +  ++K  +    ++L     +  
Sbjct: 274 YSQDVVDSLYAFTECEQSISCNLLVI-KNNLPQQMTVTDVIKNHVKQLLQILKDELEYER 332

Query: 381 QAIDRRVE--------ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--FSLTENQVDA 430
             +  R+         I + +      +     +I    K      +     +TE+ VD 
Sbjct: 333 AMLQERLHMRTLERIFIEERIYKKIETMKTASGVITAVLKGFEPFRAELIRDITEDDVDK 392

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +L + +R +   +  + + E + +    ++I  LL + K
Sbjct: 393 LLKIPIRRISLYDINKNRQETEEIQKRLKEIAKLLKNLK 431


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 69/566 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              YL YA   I ERA+P + DG KPV RRI++ M            K A++ G+ +  L
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMHHWF--DNGRMNKVAKVTGQTMA-L 100

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q       LI  QGN+GNI  GD AAA RY EA+++ +A+  L 
Sbjct: 101 HPHGDASINDALVQLGQKG----YLIETQGNWGNILTGDEAAAGRYIEAKLSALAQETLF 156

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A
Sbjct: 157 --NDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +              + PDFPTGG++  SR      Y  GR G ++++R  + ++    
Sbjct: 215 HLRGESFD--------LYPDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKLDN-- 258

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TE+P     S LIE I +     +I  ++ I D +A +  I +      +  D  
Sbjct: 259 RTLSITELPCGKTTSSLIESILKANEKGKIK-IKRIDDMTAAEADIRIHL-AAGVSSDKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA--- 382
           +++++  +D E     N  V+   + P  + +  +L+      RE+L +  + R++    
Sbjct: 317 IDALYAFTDCEVSQSPNACVIMDDK-PVFLGVTDLLRYSAERTRELLKQELTIRLEEKRE 375

Query: 383 -----------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
                      I+ R+   +    A    D  +  +    +P      R  +T + +  +
Sbjct: 376 QYLAASLERIFIEERIYKDREFEEAESEQDA-LMHVEARLEPYAHRFIRP-VTYDDLKKL 433

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +R+  + +    + ++ +  L  +  ++       K      A  IR  + +      
Sbjct: 434 LEIRMARILRFNLPKHEAMMLQLEKDIAEL------EKNIREITAYTIRWFEYLHEHYAS 487

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RRT     S      + +A                 +   +       +  K  + +
Sbjct: 488 RFPRRTQLIGFSTIQATKVAEANA---------------KLYINREEGFIGMGLKGDEFV 532

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA 577
               +    D +++   DG       
Sbjct: 533 ---CNCSDLDDVIIFFRDGTYLITKV 555


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 69/566 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              YL YA   I ERA+P + DG KPV RRI++ M            K A++ G+ +  L
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMHHWF--DNGRMNKVAKVTGQTMA-L 100

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q       LI  QGN+GNI  GD AAA RY EA+++ +A+  L 
Sbjct: 101 HPHGDASINDALVQLGQKG----YLIETQGNWGNILTGDEAAAGRYIEAKLSALAQETLF 156

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             ++    ++ +Y+  + EPV  P KFP LLA GT GIAVG+ + +  HN+ E+  A +A
Sbjct: 157 --NDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +              + PDFPTGG++  SR      Y  GR G ++++R  + ++    
Sbjct: 215 HLRGESFD--------LYPDFPTGGMMDASR------YNDGRRGGQIKSRAKIRKLDN-- 258

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TE+P     S LIE I +     +I  ++ I D +A +  I +      +  D  
Sbjct: 259 RTLSITELPCGKTTSSLIESILKANEKGKIK-IKRIDDMTAAEADIRIHL-AAGVSSDKT 316

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA--- 382
           +++++  +D E     N  V+   + P  + +  +L+      RE+L +  + R++    
Sbjct: 317 IDALYAFTDCEVSQSPNACVIMDDK-PVFLGVTDLLRYSAERTRELLKQELTIRLEEKRE 375

Query: 383 -----------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
                      I+ R+   +    A    D  +  +    +P      R  +T + +  +
Sbjct: 376 QYLAASLERIFIEERIYKDREFEEAESEQDA-LMHVEARLEPYAHRFIRP-ITYDDLKKL 433

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +R+  + +    + ++ +  L  +  ++       K      A  IR  + +      
Sbjct: 434 LEIRMARILRFNLPKHEAMMLQLEKDIAEL------EKNIREITAYTIRWFEYLHEHYAS 487

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RRT     S      + +A                 +   +       +  K  + +
Sbjct: 488 RFPRRTQLIGFSTIQATKVAEANA---------------KLYINREEGFIGMGLKGDEFV 532

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA 577
               +    D +++   DG       
Sbjct: 533 ---CNCSDLDDVIIFFRDGTYLITKV 555


>gi|238759144|ref|ZP_04620313.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
 gi|238702692|gb|EEP95240.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
          Length = 265

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 8/250 (3%)

Query: 509 TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
             +  ++  EP+T+V+S  GW+RS K H +D S L +K GDS + A    +   ++ + +
Sbjct: 1   MSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDS 60

Query: 569 DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
            G++Y L    L S RG GE +   +       I    +     KLL+ S  G  F+   
Sbjct: 61  TGRSYALDPLTLPSARGQGEPLTGKLTPPPGAAIEQVLMAPDDQKLLMASDAGYGFVCTF 120

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKG 686
           ++++A  R GKT + +    K    +++ G  D +  +    ++L+F +  +PE+S+GKG
Sbjct: 121 NDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 180

Query: 687 VRLQSYK----DGGISDVICFKI--CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
            ++ S        G   +    +   +    +    R       DL  +  +RG  GS +
Sbjct: 181 NKIVSIPAAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLTLRPEDLQKFRAERGRKGSPL 240

Query: 741 PKGFPRSGKF 750
           P+G  R  + 
Sbjct: 241 PRGLQRIDRV 250


>gi|260363423|ref|ZP_05776273.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
 gi|308111420|gb|EFO48960.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
          Length = 270

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           KA  ++ ++  EPITVV+S +GW+R  K H VD  +L++K GD         ++   + L
Sbjct: 1   KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFL 60

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626
            +DG++Y+L + +L S R  GE I   +++     I    + +     LV S  G  F+ 
Sbjct: 61  GSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDAGYGFVC 120

Query: 627 EESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683
           + +++++  R GK  + + +  ++   K V  +  D +  +    ++L+F I  +P++++
Sbjct: 121 KGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAK 180

Query: 684 GKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           GKG ++ +        ++  +S +I       LT + +  R       DL  + G+RG  
Sbjct: 181 GKGNKIINIPAAKAKEREEVLSHLIALPQGASLT-LYAGKRKLGLKPADLENFRGERGRR 239

Query: 737 GSLVPKGFPRSGKF 750
           GSL+P+G  R  + 
Sbjct: 240 GSLLPRGLQRVTRI 253


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 11/256 (4%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
              KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   +
Sbjct: 7   EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 66

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           + + T G++Y +    L S RG GE +   + L     +    +     KLL+ S  G  
Sbjct: 67  VFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYG 126

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEM 681
           F+   ++++A  R GKT + +     +   + +  +H  +  + +  ++L+F +D +P++
Sbjct: 127 FVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQL 186

Query: 682 SRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           S+GKG ++ +         D G++ +        LT I    R       +L   +G+RG
Sbjct: 187 SKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQKVVGERG 245

Query: 735 GVGSLVPKGFPRSGKF 750
             G+ + +G  R  + 
Sbjct: 246 RRGT-LMRGLQRIDRI 260


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 264/679 (38%), Gaps = 59/679 (8%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             L   Y+ YA   +  RA+ D+RDG KPV R  ++ M +         ++    VG  +
Sbjct: 46  QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEKAKDMIKSEQ----VGAGV 101

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRY-PLISGQGNFGN-IDGDSAAAYRYTEARMTQVAE 141
            K HPH   S Y+SL ++ +     Y PL+ G+G  G      S AA RYT  +  + A+
Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +   +D   +D    +++ +  P V P+  P +L     GIAVG +T  PS   Q++  
Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                I + + S       +I PDF TGG I  + + + +  + G+G F  R +  +   
Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI--- 270

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                 IVVTE+P  V   +++++I +     +        D + +D             
Sbjct: 271 --DGKNIVVTEVPQGVTVEKIMKEIEKA--EIQGITPNGYSDLTGKDGCYFEITCRAKNR 326

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              ++  ++  + ++ +F  N+  +   ++  +  + GI+  W+  RR+VL R++   + 
Sbjct: 327 VQEVLMELYTKTSLQKKFNSNLLAVESKKLV-ITGVWGIIDRWVKWRRKVLTRQTRLDLA 385

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR-----NEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +    +  KG +           I+      +++     +        +  + I+  RL
Sbjct: 386 KLVESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIKRRL 445

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
              R   + +  ++  N   E  K++  L +           I E  + F         R
Sbjct: 446 NQFR--NDNKYINQYANYQIEIAKLEKYLENIDTL-------ILEDMDRFDLLVSKKHER 496

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
            T       +  T+++  IE     + +S   +          L  LH K      I   
Sbjct: 497 RTEITNKVYEVETVKEDEIE-----IPVSECYY---QIKDGF-LRKLHVKPTSGEGIIFE 547

Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD-STCK 613
            +T   I+ LS++G+ + +   ++  L+G   G  I     L + Q +   +       K
Sbjct: 548 GYTNSTIIALSSEGEIFRIYGNDINYLTGNDIGTYIPTYSGLANAQHVQLIWATVCDEKK 607

Query: 614 LLVVSSKGNAFIVEESEII------ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
            ++    G    ++ +E +         R G +       +K+  V +   D V VV  +
Sbjct: 608 YVLTYEDGFVGFLDTAEFLVGAIKSKYLRNGISAHA----DKLTDVREYQEDSVIVVETH 663

Query: 668 RKLLIF-SIDQIPEMSRGK 685
            KL     +D I   SR  
Sbjct: 664 DKLYACAHLDSIKMKSRTA 682


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 138/239 (57%), Gaps = 9/239 (3%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+VTE+PYQV K  LIEKIA+L+  K+I  + D+RDES      ++    R  + ++
Sbjct: 1   KERIIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANV 60

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           ++ +++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  +
Sbjct: 61  ILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAE 119

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            R  IL+GL +A  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  
Sbjct: 120 ARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTG 179

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           LE  +I+ E  +L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 180 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 233


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 152/232 (65%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  +
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHY 229


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 152/232 (65%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  +
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHY 229


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 156/580 (26%), Positives = 255/580 (43%), Gaps = 70/580 (12%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  K  +L    +E ++ Y    I+ERAIPDL DG KPV RRI+  +  +       F K
Sbjct: 2   ETAKYGNLHKLFDENFIDYTSYVIRERAIPDLADGLKPVQRRILQTLHNVD---DGRFHK 58

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
            A +VGE   KLHPHGD S++ +LV LA     +  L+  QGNFGNI  GDSA+A RY E
Sbjct: 59  VANVVGE-TMKLHPHGDASIFSALVNLA----NKGYLVDRQGNFGNIYTGDSASAARYIE 113

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+T +A   +   + +  +F D+Y+    EPV  P+K P LL  G  GIAVGMAT I  
Sbjct: 114 CRLTPLARETMF--NRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMP 171

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN  E+ +A   ++           E+ + PDF  GG++       V +Y  G G  R R
Sbjct: 172 HNFCELLQAQKKILQGE--------EFAVYPDFYQGGLLD------VSAYDDGNGRLRCR 217

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           AR  +EE  +    I++ EIP+      LIE + +   A +  +L  I D +AE+V I +
Sbjct: 218 AR--IEE--KDDKTIIIREIPFGTNTQGLIESVEKAARAGKFKILS-INDYTAEEVEIEI 272

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               R L  +  +++++  +D E     N  V+     P ++ +  +L+E  +    +L 
Sbjct: 273 -KLARGLKAEETIKALYAFTDCELAISPNFTVIRDRN-PVILSVSEVLRENTSRLYNLLE 330

Query: 374 RRSSFRMQAIDRRV--EILKGLLIA---YLNIDE------IIAIIRNEDKPKPVMVSRFS 422
           +     +  +  R+    L+ + I    Y  I+E      +I  I    KP    + R  
Sbjct: 331 KELQLELARLKERLQAHQLERIFIEERLYKQIEECPSFELVIKTIDEALKPYTAELVRP- 389

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           ++   ++ +L ++++ + + +  + K E+   L + ++++  L             + ++
Sbjct: 390 VSREDIEKLLEIKIKRISRYDIERKKKEIKATLRQIKEVEKNLRD---MTGYCIRFLDDL 446

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542
              +          TTF  V  +  A     +             G+ R           
Sbjct: 447 LARYGGDYPRRTELTTFAGVQASQVALSNLTI-------------GYDR-----ESGFFG 488

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
              K G     +L     D+ILL+   G        N+  
Sbjct: 489 TQVKAG--ADNSLACSEYDKILLIDKSG---WYKVINVPE 523


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 150/204 (73%), Gaps = 1/204 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAELIIAKR 294
           TE+ YQV K++LIEKIA+L+  K+
Sbjct: 180 TELXYQVNKAKLIEKIADLVXDKK 203


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 97/232 (41%), Positives = 152/232 (65%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    R  +P++ +  ++  + M+  F + M  L   + PQV+ L  +L  +
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQVLNLKQVLVHY 229


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 134/187 (71%), Gaps = 3/187 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAV
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAV 177

Query: 186 GMATSIP 192
           GMAT+IP
Sbjct: 178 GMATNIP 184


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 108/186 (58%), Positives = 147/186 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S    RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214
           +D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NPEI+ 
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 215 EKLLEY 220
           ++L+EY
Sbjct: 181 QELMEY 186


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 148/361 (40%), Gaps = 20/361 (5%)

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
           I++ +   K  +V+ F  TE Q +AI+ L+L  L   +   ++ E D L    + +  +L
Sbjct: 9   ILKIKKNAKDNLVAEFDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHIL 68

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           +      N I  E+ E+++ F         R +  E   ++    ++ M+  E + + ++
Sbjct: 69  DDHDALLNVIKNELTEIRKKFKTD------RLSTIEAEISEIKIDKEVMVPSEEVVLSLT 122

Query: 526 NRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582
             G+I+   + S + S    +  K+GDSL   L  +T D  L+ +  G+   +P   L  
Sbjct: 123 RHGYIKRTTTRSFNASGVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAE 182

Query: 583 GRGH--GEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTR 636
            R    G+ +  ++ ++ ++ ++  F            ++ +  G        +      
Sbjct: 183 IRWKELGQHVSQIVSIDEDEQVIDVFNEKDFSQHEAFYIMATRNGMIKKSSVPQFKTTRY 242

Query: 637 KG-KTFLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK 693
                 +KV  ++++  +++V  D +  V+      L +S +++ +   R  GV+  + K
Sbjct: 243 NKPLIAMKVKDQDEVINIMRVESDQLITVITHKGMSLTYSTNELSDTGLRAAGVKSINLK 302

Query: 694 DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG-KFLS 752
           D     V+   I    + + +  R   +     +    KR   G  + K   ++  + ++
Sbjct: 303 DEDFV-VMTQMINHSESVMMATQRGAIKHIGFKVLQEAKRAQRGITLLKELKKAPHRIVA 361

Query: 753 S 753
           +
Sbjct: 362 A 362


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 147/565 (26%), Positives = 251/565 (44%), Gaps = 64/565 (11%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
                  YL YA   IKERAIPD+ DG KPV RRIIH + EM       F K A +VG  
Sbjct: 5   ETIYRHNYLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEMD---DGKFHKVANVVGH- 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAE 141
             + HPHGD S+Y++LV +A   +     I  QGNFGN + GD AAA RY E R+   A+
Sbjct: 61  SMRYHPHGDASIYEALVNMANFDL----FIERQGNFGNALTGDRAAAGRYIECRIFPFAK 116

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            +L   + +  ++ D+Y+  + EPV FP+K P +L  G  GIAVGM+T +  HN  E+ +
Sbjct: 117 RVL--YNPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLD 174

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A  +++            +++ PD PTGGI+       V+ Y  G G   VRA+    + 
Sbjct: 175 AMKSVLKGES--------FMLFPDLPTGGILD------VQEYGDGTGSISVRAKLDTSDP 220

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
            R    IV+TE+PY V    +IE I       R+  +  I D +++   I +    R   
Sbjct: 221 KR----IVITELPYGVTSEAMIESIEAAARKGRLK-VAAINDYTSDKANIEV-CLARGTY 274

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
              + ++++  +  E +  +N  V+    +P++MP+  I++  +  R+ +   ++   ++
Sbjct: 275 SKDIEDALYAHTSCEQKISVNALVI-KDNMPEIMPVSAIVRFHV--RQLLDVLKAELELE 331

Query: 382 A-------IDRRVEILKGLLIAYLNI------DEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                     R +E +      Y  I      D + A + +  +P    + R  L  + V
Sbjct: 332 KGHLFDTLHARTLERIFVEERIYKRIEQKRSADAVEAAVVSGFEPYGSELIRP-LVHDDV 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  + ++E++N+  + + I+  L+      +     + E+K +   
Sbjct: 391 ERLLKIPIRRISLFDIEKNRAEIENIHEKLKDIEWKLSH---LTDYALGYLDELKTLLGV 447

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-IR----SLKSHSVDLSAL 543
                R      E+  A     +   +  +P T  +   G+ I+           D   L
Sbjct: 448 KEHARRSSIKQFELVDAKSVAQRDLTLRYDPKTGYL---GYDIKTGNAMAMVSLYDRLLL 504

Query: 544 HFKEG-----DSLKIALHAHTTDRI 563
             K+G     D+             
Sbjct: 505 ILKDGTYFVQDAPDKIFVGKGLQYC 529


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 86/214 (40%), Positives = 133/214 (62%), Gaps = 1/214 (0%)

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +R+++++  +L+ +++D VDF   Y+  + EPVV P++ PNLL NG +GIAVGMAT+IP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253
           HN+ E+  A   L+ NP+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGGIVM-GKSEIRHAYETGRGNIVVR 119

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           ++  +EE   G   I VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   + 
Sbjct: 120 SKTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIA 179

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
               R    ++++ ++F L+ M+T F  NM  + 
Sbjct: 180 IDIRRDASAEVVLNNLFKLTLMQTSFSFNMLAII 213


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 128/497 (25%), Positives = 206/497 (41%), Gaps = 92/497 (18%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI+  M E+GL      +K AR+VG+V+GK HPHGD +VY++LVRLAQ F    P
Sbjct: 32  KPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSAP 91

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           L+ G GNFG++D D  AA RYTE R+ +V+E  +L  +  + V F +T++   +EP V P
Sbjct: 92  LVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVLP 151

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
           ++ PNLL NG+SGIAV +AT++  HN+ E      +    P               FP  
Sbjct: 152 ARVPNLLINGSSGIAVAVATNMAPHNLGEALSG-RSHGTPPGAG------------FPXX 198

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL 289
                  + +     + RG         + +  R        E+ Y V    L+      
Sbjct: 199 --XXXXXDGMRVVIEIKRGHDASTVLAELYKKTR-------LEVNYNVNNVALV------ 243

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
                 P +  +RD   E ++  +    R                               
Sbjct: 244 ---GNKPTVMPLRDMLDEFIKFRVDTIERR------------------------------ 270

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
               ++      K  +           +F +   D  V+I++G               ++
Sbjct: 271 -TRFMLGKAQDRKHLVE--------GFAFVLTDADGVVKIIRG--------------SKD 307

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
                  +  +  L+E Q DAIL + LR L  LE  ++ +EL +L  + E    LLN   
Sbjct: 308 GPSAAKKLREKHGLSEIQSDAILAMPLRRLTGLEADKLDAELKDLNGQIEYYQGLLNDKS 367

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  + +  E +E K  F+       RRTT  +   +D     +     +   + +S RG+
Sbjct: 368 KVIDVLIQEAQEAKTAFA-----RERRTTLEQTGPSDGVI--EDEGPPKDNIITLSERGY 420

Query: 530 IRSLKSHSVDLSALHFK 546
           ++ +   +    A   +
Sbjct: 421 VKRVCPTNFGAQARGTR 437


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 147/606 (24%), Positives = 266/606 (43%), Gaps = 71/606 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T +  HN  E+ +A++ ++     +        I PDF T GI        V +Y  G
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFT--------IYPDFQTAGIAD------VSNYNDG 263

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G RVR R  + ++      +V+T+IP+    S LI+ I +    K    ++ I D +A
Sbjct: 264 LRGGRVRVRAKISQLD--KQTLVITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTA 320

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +V I++      + PD  +++++  +  ET       V+   + P  + +  +LK    
Sbjct: 321 AEVEILIHL-FPGVSPDKSIDALYAFTACETSVAPLGCVIEDNK-PLFIGVSAMLKISTH 378

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKP 415
              ++L      ++  ++ +   L    I   N            + +I  + +  KP  
Sbjct: 379 RTVQLLKSELEIQLSELEEQWHFLSLERIFIENKIYRDIEDKTTRENVIKAVDDGLKPHI 438

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + R ++TE  +  +L++R+  + K +  + + ++++L  + E++   L +     +  
Sbjct: 439 KHLKR-AVTEEDILRLLDIRIMRISKFDSNKAQDKIESLEGDIEQVKHDLEN---LIDFA 494

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
                 +KE + K    GR R T                IE   + +  +     +   +
Sbjct: 495 IAYFTRLKEKYGK----GRERQTELRSF---------DTIEATKVVLRNT-----KLYVN 536

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                     K+ + +         D +++   DG+       +    +  G+ I  +  
Sbjct: 537 KEEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGRLMISKVDD---KKFVGKDIIHIAV 590

Query: 596 LNHNQD 601
            + N  
Sbjct: 591 FDKNDK 596


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 107/198 (54%), Positives = 147/198 (74%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG
Sbjct: 5   DIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVG 64

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++
Sbjct: 65  AVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLS 124

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ 
Sbjct: 125 HELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELI 184

Query: 201 EAALALIDNPEISIEKLL 218
           +  L L+D+ + S+E+++
Sbjct: 185 DGLLYLLDSKDASLEEIM 202


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 152/232 (65%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ ++++ VDF   ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  +ALIDNPE++  +L+ YI GPDFPT GII+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRIVV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE   G   I+VTE+PYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEE-NGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRM 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    R  +P++ +  ++  + M+  F + M  L   + PQ++ L  +L  +
Sbjct: 179 VIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQ-PQILNLKQVLVHY 229


>gi|332297527|ref|YP_004439449.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
 gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 127/459 (27%), Positives = 214/459 (46%), Gaps = 46/459 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++   ++ +L YA   I++RAIPD+ DG KPV RRI+H + E+       F K A +VG+
Sbjct: 4   VKNLFDKNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFEVD---DGKFNKVANVVGQ 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA 140
              K HPHGD S+  +LV LA   +     I  QGNFGN   GD A+A RY E R+  +A
Sbjct: 61  -CMKYHPHGDASIGGALVVLANKEL----FIEKQGNFGNLYTGDGASAARYIECRLKPLA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             +L   +     +  +Y+  + EPVVF +K P  L  G  GIAVGM+T+I SHNV+E+ 
Sbjct: 116 RDVL--YNPAITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVI 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A        EI+  K  ++ + PD  TGG+I  S       Y+ G G    RA+    +
Sbjct: 174 QA--------EIACLKGEKFALYPDCFTGGLIDVSD------YQDGLGKITTRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    IVV E+P+     RL E I +     ++  +  + D +A+ V I +    R +
Sbjct: 220 PKR----IVVRELPFGSNSERLTESIVKAAKNGKLK-VASVTDYTADKVEIEI-KLQRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             + ++ +++  ++ E     N+ V+     PQVM +  +++      + V   +    +
Sbjct: 274 YAEDVVSALYAFTECEQSISCNLLVIRDNM-PQVMTVSDVIRYHAE--KLVAVLKDELEL 330

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----PKPVMVSRFSL--------TENQV 428
           +      ++    L      + I   I          K V+              +E+ V
Sbjct: 331 ERAQLIDKLHLRTLERIFIEERIYKRIEEMKTEAAVSKAVVTGFEPFRAELIRAVSEDDV 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
             +L + +R +   +  + + E+  +    ++I+ LL +
Sbjct: 391 AHLLKIPIRRISLYDINKNRQEVQAINKRLKEIEKLLKN 429


>gi|71042520|pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-Terminal Domain
 gi|71042521|pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-Terminal Domain
          Length = 256

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            EP+T+V+S  GW+RS K H +D   L++K GDS K A+   +   ++ + + G++Y + 
Sbjct: 1   SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 60

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
              L S RG GE +   + L     +    +     KLL+ S  G  F+   ++++A  R
Sbjct: 61  PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 120

Query: 637 KGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK- 693
            GK  + +     +   V +    D +  + +  ++L+F +  +P++S+GKG ++ +   
Sbjct: 121 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 180

Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
                 + G++ +        LT I    R       +L    G+RG  G+ + +G  R 
Sbjct: 181 AEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQRI 238

Query: 748 GKF 750
            + 
Sbjct: 239 DRV 241


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 142/606 (23%), Positives = 265/606 (43%), Gaps = 71/606 (11%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +N   E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H+M E+   
Sbjct: 42  ENNENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKELD-- 97

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A IVG  +   HPHGD S+ D++V++ Q  +    +I  QGN+GNI  GDSA
Sbjct: 98  -DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQKDL----IIDMQGNWGNILTGDSA 151

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++    +L        ++  +Y+   +EP+  P KFP LLA G  GIAVG
Sbjct: 152 AASRYIEARISKFGHDVL--YSPKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGIAVG 209

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           ++T +  HN  E+ ++++ ++     +        + PDFPT GI        V +Y  G
Sbjct: 210 LSTKVLPHNFNELIDSSIKILKGKPFT--------LFPDFPTAGIAD------VSNYNDG 255

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G RVR R  + ++      +V+T+IP+    S LI+ I +    K    ++ I D +A
Sbjct: 256 LRGGRVRVRAKIGQLD--KQTLVITQIPFSTNTSTLIDSILKA-NEKGKIKIKKIEDNTA 312

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            +V I++      + PD ++++++  +  ET       V+   + P  + +  +LK    
Sbjct: 313 AEVEILIHL-PAGVSPDKMIDALYAFTACETSVAPLGCVIENNK-PLFIGVSDMLKISTN 370

Query: 367 HRREVLFRRSSFRMQAIDRRVE---ILKGLLIAYLNIDEII--------AIIRNEDKPKP 415
              ++L R    ++  ++ +     + K  +   + ID  +          + +  +P  
Sbjct: 371 RTVDLLKRELEIQLDELENKWHFSTLEKIFIREEMYIDFKLYSDRESLYKYMYDRFEPFL 430

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
               R  + ++ +  +  + +  + + +  +    +  L AE E++   L+      +  
Sbjct: 431 KSFVR-EINDDDLQKLTQIPMIRITRFDSDKADDAIAKLEAEMEQVKYHLDH---IIDYT 486

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
               +++K+ + K    GR R T  E+   D     + ++    + V             
Sbjct: 487 IDFFQKLKDKYGK----GRERQT--ELRSFDNIEATKVVLRNTKLYVN------------ 528

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
                     K+ + +         D +++   DGK       +    +  G+ I  +  
Sbjct: 529 REEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGKMMVAKVDD---KKFVGKDIIHIAV 582

Query: 596 LNHNQD 601
            + N  
Sbjct: 583 FDKNDK 588


>gi|213023935|ref|ZP_03338382.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 265

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 26/275 (9%)

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +L S  +    I  E+  +++ F        RRT   E++        + +I +E + V
Sbjct: 1   DILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQEDVVV 52

Query: 523 VISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
            +S++G+++          +      SA   KE D +   L A+T D IL  S+ G+ Y 
Sbjct: 53  TLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYW 112

Query: 575 LPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEES 629
           +    L        G  I  L+ L  N+ I        Y+    + + ++ G       +
Sbjct: 113 MKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALT 172

Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687
           E       G   + ++  +++  V   +G D V +     K++ F  D +  M R   GV
Sbjct: 173 EFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGV 232

Query: 688 RLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNR 721
           R       G   V+   I  G    +      Y +
Sbjct: 233 RGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGK 265


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/217 (42%), Positives = 146/217 (67%), Gaps = 4/217 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +SN     E++++ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ AM+  G
Sbjct: 1   MSNP----EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEG 56

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 F+KSA+ VG VIG  HPHGD SVY+++VR++Q +  R  LI   GN G++DGD 
Sbjct: 57  NTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDP 116

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA RYTEAR++ ++  +L+ ++++ VDF   +++  SEP V P++FPNLL NG++GI+ 
Sbjct: 117 PAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISA 176

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
           G AT IP HN+ EI EA +  +DNP  + + +++ + 
Sbjct: 177 GYATDIPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVK 213


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/590 (23%), Positives = 244/590 (41%), Gaps = 72/590 (12%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL       +L YA   I ERA+P + DG KPV RRI++A   M L       K A+IVG
Sbjct: 47  SLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYA---MQLFENGHLHKVAKIVG 103

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQV 139
           + +   HPHGD S+ D+LV+L Q       LI  QGN+GN + GD AAA RY EA+++ +
Sbjct: 104 QTMA-FHPHGDASINDALVQLGQKG----FLIDTQGNWGNTLTGDEAAAGRYIEAKLSSL 158

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L        +++ TY+    EPV  P +FP LLA G  GIAVG+++ I  HN +E+
Sbjct: 159 ALEVLFDSK--LTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKEL 216

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EAA+A +              + PDFPTGG++   +      Y  G  G  ++ R  +E
Sbjct: 217 LEAAIAYLRGESFE--------LYPDFPTGGLLDVDK------YNDGHRGGALKCRAKIE 262

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           ++      + +TE+P+    + LIE I +     +I  ++ I D +A    I +      
Sbjct: 263 KIDD--RVLSITELPFGKTTTSLIESILKANEKGKIK-IKHIDDMTAATADIRIQL-PAG 318

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +  D  ++ ++  +D E     N  V+     P  + +  +LK      +E+L  + ++R
Sbjct: 319 VSTDKTIDGLYAFTDCEVGLSPNACVI-KEGTPVFLGVSDLLKYSADRTKELLVAQLNYR 377

Query: 380 MQA--------------IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           +                I+ R+   K    A    D  +  +R   +    +V    +TE
Sbjct: 378 LGEVQDALVTASLERIFIENRIYKDKPFEEAACEADA-LDHVRKRIEAMEDLVFVRPITE 436

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             +  +L +++  + +    + +  +  L+ +   I+  L    Q        I     +
Sbjct: 437 ADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEKHLAHSTQYT------IDYYTRL 490

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
             +      R+TT       +               +  + + +           +    
Sbjct: 491 LKEFGAGWTRKTTIARFGTIEATK-----------VIEATEKLYF----DREGGFAGTGL 535

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
           K  + +         D ++++  +G         +   +  G    L I+
Sbjct: 536 KNAEFV---AECSLLDEMIVIFRNGTY---RISKIEEKKFIGRGEVLYIN 579


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/199 (52%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKSRLIEKIAEL 289
           TE+P QV K++LIE IA+L
Sbjct: 180 TELPXQVNKAKLIEXIADL 198


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 138/235 (58%), Gaps = 9/235 (3%)

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 1   IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 60

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  + ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  
Sbjct: 61  LYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAH 119

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           IL+GL IA  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  
Sbjct: 120 ILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLERE 179

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +I+ E   L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 180 KIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 229


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 211/497 (42%), Gaps = 28/497 (5%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            + +V   SL+         Y  +   +R++PDL DG KPV RRI+ + S++       F
Sbjct: 17  ADRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQVCRT---QF 73

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSAR+ G  +G  HPHG+ ++Y + V + Q      P + G+GNFG++  D AAA RYT
Sbjct: 74  EKSARLTGHCMGAYHPHGNSAIYSAAVNMVQ---HPSPTLLGKGNFGSMT-DGAAAERYT 129

Query: 133 EARMTQVAELILQGVDED--AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
             R++   +        +     F   Y+++D EPV  P++ PN+L NG  GI VG+ T 
Sbjct: 130 NVRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTK 189

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           +P+   + + E    +    ++      + +       GG +V S+E+  +  ++  G  
Sbjct: 190 LPTFTPESVLEVLNRMFKGEKLQAVDFAKTLKYHH-KWGGQLVRSKENQAQWKQMFVGSM 248

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                  V ++ R    + ++  P        ++K+  +    +    +          +
Sbjct: 249 ANLQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKCFNSKGTTTY-----Q 303

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD---------GIL 361
           I   P       D  +E +   +     F +N+       V  V              ++
Sbjct: 304 IECKPGFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLI 363

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +W   R  +  +  ++R++  +  +   K L+ A   +D I   +R  D P   +    
Sbjct: 364 LQWCRMRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSD-PDASLQKLL 422

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +T  Q   IL+L++R L KL++ ++K  L     E +++ +     K Q   +  ++  
Sbjct: 423 KITAEQAKQILDLQVRKLSKLDQSKLKGTLKTQEQELKQLQTWQAKPKAQ---VLLDLAA 479

Query: 482 VKEIFSKSTDLGRRRTT 498
           V++   K  +   + +T
Sbjct: 480 VQQALDKDRNFKLKEST 496


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/171 (57%), Positives = 133/171 (77%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 171


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 96/171 (56%), Positives = 131/171 (76%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGM
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 99/212 (46%), Positives = 148/212 (69%), Gaps = 1/212 (0%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               L+ +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+
Sbjct: 8   EDPLLMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLN 67

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 68  ATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 127

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTE+R+++ AEL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVG
Sbjct: 128 AAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVG 187

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLL 218
           MAT IP HN++E+ +AA+ LI+ P+ ++++LL
Sbjct: 188 MATDIPPHNLREVAKAAITLIEQPKTTLDQLL 219


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 155/635 (24%), Positives = 277/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFSKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++               +     +
Sbjct: 446 KE----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE------------GFAGTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 216/461 (46%), Gaps = 46/461 (9%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +     + +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVA 140
              K HPHGD S+ ++LV LA   +     I  QGNFGNI  GD A+A RY E R+ + A
Sbjct: 61  -CMKYHPHGDASIGNALVVLASKEL----FIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           + I    +    D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI 
Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA  A +            + + PDFPTGG+I  S       Y  G G   VRA+    +
Sbjct: 174 EAEKAFLSGKS--------FALFPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             R    IV+ E+P+      +I  I     A ++  + +I D + E+V I L    R +
Sbjct: 220 EKR----IVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGENVEIEL-KLPRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               ++++++  ++ E   P N+ V+    +P  + +  I+K       ++L     +  
Sbjct: 274 YSADVVDALYAFTECEQSIPCNLLVI-KDNLPVQITVTDIIKYHAKQLMQILKDELEYER 332

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------FSLTENQV 428
             +  R+ +    L      + I   I      + V+ +               +TE+ V
Sbjct: 333 AMLTERLHLRT--LERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDV 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           D +L + +R +   +  + + E+  +    ++I  LL + K
Sbjct: 391 DKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKNLK 431


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 138/599 (23%), Positives = 258/599 (43%), Gaps = 81/599 (13%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+       + K A +VG  +   
Sbjct: 67  KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNKVANVVGHTMQ-Y 122

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GNI  GD AAA RY EAR+++ A  +L 
Sbjct: 123 HPHGDASIGDAMVQIGQKDL----LIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVL- 177

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
                  ++  +Y+   +EP+  P KFP LLA G  GIAVG++T +  HN  E+ +A++ 
Sbjct: 178 -YSPKITEWGLSYDGRKAEPINLPVKFPMLLAQGAEGIAVGLSTKVLPHNFNELIDASIK 236

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
           ++     +        + PDF T GI        V +Y  G  G RVR R  + ++ +  
Sbjct: 237 ILKGKPFT--------LYPDFMTQGIAD------VSNYNDGMRGGRVRVRAKISQLDKN- 281

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             +V+T+IP+    S LI+ I +    K    ++ I D +A DV I++      + PD  
Sbjct: 282 -TLVITQIPFSTNTSSLIDSILKA-NDKGKIKIKKIEDNTAADVEILIHL-FPGVSPDKT 338

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           ++++F  +  ET       V+   + P  + +  +LK       ++L +    +++ +  
Sbjct: 339 IDALFAFTACETSVAPLGCVIEDNK-PLFIGVSQMLKISTHRTVDLLRQELEIQLEELKN 397

Query: 386 RVE---ILKGLLIAYLNIDEII--------AIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           +     + K  +   + ID  +          + +  +P      R  + ++ +  +  +
Sbjct: 398 KWHFSTLEKIFIREEMYIDFKLYGDRESLYKYLYDRFEPFKKSFVR-EINDDDLQRLTQI 456

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +  + + +  +    +  L  E ++++    + +   +       ++KE + K    GR
Sbjct: 457 PMIRITRFDSDKADDLIAKLEDEMKEVEH---NLEHLTDFAIAYFTKLKEKYGK----GR 509

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
            R T   V            +E   + +  +     +   +          K+ + +   
Sbjct: 510 ERQTELRVF---------DNVEATKVVLRNT-----KLYVNREEGFVGTSLKKDEYVGD- 554

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 D +++   DG                    +  I     +DI+   V+D   K
Sbjct: 555 --CSDIDDVIVFLRDGTLMITKVDA-----------KTFI----GKDIIHVAVFDKNDK 596


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + +PVV PS+ PNLL NG +GIAVGMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NP I I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I
Sbjct: 61  NPGIPIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +
Sbjct: 120 IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +N+  L
Sbjct: 180 LYKQTALQTSFGINLLAL 197


>gi|153830649|ref|ZP_01983316.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
 gi|148873858|gb|EDL71993.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
          Length = 254

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +S +GWIR  K H VD  +L++K GD+        +  + + L +DG++Y+L +  L S 
Sbjct: 2   LSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSA 61

Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           RG GE I   +++     I    + +     LV S  G  F+ +  ++++  R GK  + 
Sbjct: 62  RGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALIN 121

Query: 644 VSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY---KDGGI 697
           +    ++   +++  +  D +  +    ++L+F I  +P++S+GKG ++ +    K    
Sbjct: 122 LPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTR 181

Query: 698 SDVIC--FKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747
            +V+     + +G +  + +  R      +DL  + G+RG  G+L+P+G  R 
Sbjct: 182 EEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQRV 234


>gi|67463753|pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
 gi|67463754|pdb|1ZI0|B Chain B, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
          Length = 307

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 94/253 (37%), Gaps = 18/253 (7%)

Query: 517 KEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568
           +E + V +S++G+++          +      SA   KE D +   L A+T D IL  S+
Sbjct: 2   QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 61

Query: 569 DGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623
            G+ Y++    L        G  I  L+ L  ++ I        ++   K+ + ++ G  
Sbjct: 62  RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTV 121

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682
                +E       GK  +K+   +++  V   +G D V +     K++ F    +  M 
Sbjct: 122 KKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG 181

Query: 683 -RGKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740
               GVR     +G    V+   +  G    + +    Y +           R   G + 
Sbjct: 182 CNTTGVRGIRLGEG--DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239

Query: 741 PKGFPRSGKFLSS 753
            K   R+G  + +
Sbjct: 240 IKVTERNGLVVGA 252



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 16/208 (7%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKIA 554
           E      A L     E+     + +  G ++        +  +    A+   +GD L   
Sbjct: 92  EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGV 151

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTC 612
                 D ++L S +GK       ++   R  G     +  I L     +V+  V     
Sbjct: 152 DLTSGEDEVMLFSAEGKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG 208

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENR 668
            +L  +  G       +E    +R  K  + +   E+   +   V+V   D + ++ +  
Sbjct: 209 AILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            L+   + +I  + R  +GV L    + 
Sbjct: 269 TLVRTRVSEISIVGRNTQGVILIRTAED 296


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 279/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++  G++                +
Sbjct: 446 KE----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/398 (29%), Positives = 192/398 (48%), Gaps = 36/398 (9%)

Query: 129 YRYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            RYTE R+T+  E  +L+ +D+  V FR  ++  + EPVVFP+  P +L  G+SGIAVGM
Sbjct: 1   MRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGM 60

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T IP HN+ EI +A +ALI +PE+   +LL  + GPDFPTGG++V S E I  +Y+ GR
Sbjct: 61  STQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNS-EEIPGAYKEGR 119

Query: 248 GGFRVRARWCVEEVG------------------------------RGSWCIVVTEIPYQV 277
           G   +R R+ +E                                 +    +V+TE+PY V
Sbjct: 120 GRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGV 179

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            KS +++ IA++I  K +  +  +RDES      V+    R  D   ++  +   ++++ 
Sbjct: 180 NKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQV 239

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
             P+++  L  G  P    L  +L  W+A R   L R  +        R  +L+GLL A 
Sbjct: 240 YIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAV 299

Query: 398 LNIDEIIAIIRNE---DKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             +D+++  +R     D+ K  +       +  Q  A+L L L  L +LE  Q++ E   
Sbjct: 300 SLMDDVVKTVRESLSADEAKQKLTEPPLGFSPAQAQALLRLTLSRLTRLERRQLEEEAKA 359

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
                 ++ SLL   ++ +  +  E++  K        
Sbjct: 360 QKNRLSELASLLAHDREIYELMVEELQAHKTRHKAPRK 397



 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 40/137 (29%)

Query: 644  VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS--RGKGVRLQSYKDGGISDVI 701
            + SEEK           + +V      L F    +      + +GVR    + G     +
Sbjct: 929  LKSEEK----RDTNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASV 984

Query: 702  CFKICE--------------------------------GLTWIDSAGRSYNRSENDLLGW 729
                 E                                 L  + +AG       + L   
Sbjct: 985  AVVPPEVKEDEAKTESRKEGDSDETQSKNESSNEKAEPSLLIVTAAGFGKRIRVSAL--R 1042

Query: 730  LGKRGGVGSLVPKGFPR 746
            + +R GVG  V +   R
Sbjct: 1043 MQRRRGVGVRVIRLVKR 1059


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299284|ref|YP_004441205.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/561 (24%), Positives = 240/561 (42%), Gaps = 69/561 (12%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              +L YA   I ERA+P + DG KPV RR+++ M  M         K A+IVG  +   
Sbjct: 56  RHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMHLME---NGTLHKVAKIVGATMA-Y 111

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q       LI  QGN+GNI  GD AAA RY EA+++  A  IL 
Sbjct: 112 HPHGDASINDALVQLGQKG----YLIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEILF 167

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A
Sbjct: 168 --GDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACA 225

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +     +        + PDFPTGGII   R      Y  G+ G +V++R  +E +    
Sbjct: 226 YLRGEPFT--------LYPDFPTGGIIDVDR------YNDGKRGGQVKSRARIERIED-- 269

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + V ++P+    S LI+ I +    K +  ++ I D +AE   I ++     +  D  
Sbjct: 270 RVLSVRDLPFGKTTSTLIDSILKA-NDKGLIKIKRIDDMTAETADIRIYL-PVGVSADKT 327

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH---------RREVLFRRS 376
           ++ ++  +D E     N  V+   + P+ + +  +L+  + H         R ++  R+ 
Sbjct: 328 IDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVKHTRELLQEDLRLQLHDRQE 386

Query: 377 SFR---MQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            +    ++   I+ R+  L+    A  +    + +IR   +P         +T++ +  +
Sbjct: 387 EYMGASLERLFIEHRIYKLRPFEEA-PDQQTALDVIRKALEPIVGDSLLRPITDDDLARL 445

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L +++  + K    + +  +  L  E  +I   L+            I     +  +   
Sbjct: 446 LEIKMARILKFNLEKNEQLILRLTEEMAQIQHHLDH------ITDYTIHYYSSLLEEYGA 499

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              RRT        +   + +                 ++      +  +    K G+ +
Sbjct: 500 GWERRTQIGHFGTIEATKVVEEN---------------LKLYIDRKMGFAGTGIKGGEYV 544

Query: 552 KIALHAHTTDRILLLSTDGKA 572
                    D +++   DG  
Sbjct: 545 CD---CSEIDDMIVFFRDGTY 562


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+DN + S+E+
Sbjct: 183 LLDNKDASLEE 193


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 129/163 (79%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGDQ
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           SVY ++VR+AQ F  RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A  +L  +D++ V
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           DF   Y+  + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 245/563 (43%), Gaps = 66/563 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           ++ +L YA   I +RAIP + DGFKPV RRI+H+M E+       + K A IVG    K 
Sbjct: 19  KDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKELE---DGRYNKVANIVGN-TMKY 74

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D++V++ Q  +    LI  QGN+GN+  GDSAAA RY EAR+T  A  ++ 
Sbjct: 75  HPHGDASITDAMVQIGQKEL----LIDTQGNWGNVYTGDSAAAARYIEARLTPFALEVVF 130

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
             +     +  +Y+  ++EP+  P KFP LLA G  GI VG++T +  HN  E+ EA++A
Sbjct: 131 --NPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLSTKVMPHNFNELIEASIA 188

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +           ++ + PDF TGG++       V +Y  G  G R+RAR  +  + +  
Sbjct: 189 YLKGK--------KFQLYPDFMTGGMLD------VSNYNDGERGGRLRARARI--IQKDK 232

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + +TE+P+    S LI+ I +    K    ++ I D +++ V I +   N  + PD +
Sbjct: 233 HTLCITELPFSKTTSDLIDSIIKA-NEKGKIKIKKIEDNTSDQVEINIHL-NNDVSPDKM 290

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +++++  +D E     N  V+  G  P  + +  ILK    H   +L R     +  ++ 
Sbjct: 291 IDALYAFTDCEISISPNACVIV-GDKPMFLSVSEILKRNTDHTVSLLKRELEIELGELED 349

Query: 386 RVEILKGLLIAYLN-----------IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           +        I   N            + +   I    +P    + R  +TE+ +  +  L
Sbjct: 350 KWHFASLERIFIENEIYQEIKGKDSKEAVYEAINLALQPFIKNLMREVVTED-IIRLTEL 408

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
               + + +  +    +  L  + E++   L                +K+ F K  +   
Sbjct: 409 PFMRISRYDRDKALENIAALEGKMEEVKHHLAH---LVEYAINYFLNIKKKFGKDKE--- 462

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
           RRT   E+   D     +  +  E   V  +  G+I               ++    +  
Sbjct: 463 RRT---ELRVFDTIDATKVAVANEKFYVNRAE-GFI-----------GTSLRKD---EYV 504

Query: 555 LHAHTTDRILLLSTDGKAYTLPA 577
                 D I+    DG       
Sbjct: 505 FDCSDIDDIITFRKDGVMQVTKV 527


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+DN + S+E+
Sbjct: 183 LLDNKDASLEE 193


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/560 (24%), Positives = 234/560 (41%), Gaps = 67/560 (11%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
              +L YA   I ERA+P + DG KPV RR+++ M  M         K A+IVG  +   
Sbjct: 53  RHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMHLME---NGTLHKVAKIVGATMA-Y 108

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQ 145
           HPHGD S+ D+LV+L Q       LI  QGN+GNI  GD AAA RY EA+++  A  IL 
Sbjct: 109 HPHGDASINDALVQLGQKG----YLIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEILF 164

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
              +    +  +Y+ +  EPV  P++FP LLA G  GIAVG++  I  HN +E+ EAA A
Sbjct: 165 --GDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACA 222

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265
            +     +        + PDFPTGGII   R      Y  G+ G +V++R  +E +    
Sbjct: 223 HLRGEPFT--------LYPDFPTGGIIDVDR------YNDGKRGGQVKSRARIERIED-- 266

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             + V ++P+    S LI+ I +    K +  ++ I D +AE   I ++     +  D  
Sbjct: 267 RVLSVRDLPFGKTTSTLIDSILKA-NDKGLIKIKRIDDMTAETADIRIYL-PVGVSADKT 324

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID- 384
           ++ ++  +D E     N  V+   + P+ + +  +L+  + H R +L      ++     
Sbjct: 325 IDGLYAFTDCEVSISPNACVIEDDK-PRFLGVSDLLRHSVEHTRGLLEEDLRLQLHDRQE 383

Query: 385 -------RRVEILKGLLIAYLNIDE-----IIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                   R+ I   +       D       + +IR   +P         +T++ +  +L
Sbjct: 384 EYMGASLERLFIEHRIYKLPAFEDAPDQQTALDVIRKALEPIVGDSLLRPITDDDLARLL 443

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +++  + K    + +  +  L  E  +I   L+            I     +  +    
Sbjct: 444 EIKMARILKFNLEKNEQLILRLTEEMAQIQHHLDHITDYA------IHYYSSLLEEYGAG 497

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
             RRT        +   + +                 ++      +  +    K G+ + 
Sbjct: 498 WERRTQIGHFGSIEATKVVEEN---------------LKLYIDRKMGFAGTGIKGGEYVC 542

Query: 553 IALHAHTTDRILLLSTDGKA 572
                   D +++   DG  
Sbjct: 543 D---CSEIDDMIVFFRDGTY 559


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T    S      +++   +   + + ++               +     +
Sbjct: 446 KE----HQRKTKI--SLIKSKNVKEIATKNMKVYLNLAE------------GFAGTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 153/635 (24%), Positives = 272/635 (42%), Gaps = 78/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNMANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  + EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVL--YSKEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y + PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGES--------YELYPDFPTG--------GIVDVNEYADGNGKVLVRARI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 EPTDDNK-AILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIELTL-PR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  I+K    H +++L      
Sbjct: 272 GVYASEVIEKLYHYTNCQVSISVNLLLLSDRYPVIY-TVTDIIKFHAEHLQKILKMELEL 330

Query: 379 RMQAIDRRV--------EILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQ 427
               I  ++         I K +      I +   ++ I+ +E            +  + 
Sbjct: 331 ERNKILEKIFSKTLEQMFIEKKIYKILETISKESDVVNIVLSEILKYKDSFLYRDIVLDD 390

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           ++ +L + +R +   +  +   ++ NL  E   + S+ ++ K         I  + E +S
Sbjct: 391 IENLLKIPIRKISMFDIDKNNKDIRNLSKE---LKSVESNIKSIRGFSINFIDTLLEKYS 447

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      RR T  E+S      +++   +   + + +   G++                +
Sbjct: 448 KVY----RRKT--EISLIKSKNVKEIATKNMKVYLNL-KAGFV-----------GTSLID 489

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N+++D V + +
Sbjct: 490 GEFIG---NASYYDKILIFKKN--SYVLKNIEDKTFIDKNNVNVLVYDINNSKDQVFSII 544

Query: 608 Y---DSTCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ +  E I
Sbjct: 545 YLNKADNFYYVKRFKIDKFITDKIYEFLNDGDEFI 579


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 127/163 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD RDG KPVHRR+++AMSE+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ V
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           D+   Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 153/638 (23%), Positives = 275/638 (43%), Gaps = 79/638 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNMANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLYSKEITT--YEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y + PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILRAVKSELLGEA--------YKLYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 EPTDDNK-AILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIELTL-PR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  + ++E ++  ++ +    +N+ +LS         +  I+K    H ++VL      
Sbjct: 272 GVYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIY-TVTDIIKFHAEHLQKVLKMELEL 330

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
               I  ++             +  +L       +++ I+ +E        SR  +  + 
Sbjct: 331 ERSKILEKIFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDRFSR-KIVLDD 389

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           ++ +L + +R +   +  +   ++  L  E   + S+ ++ +   N     I ++   +S
Sbjct: 390 IENLLKIPIRKISMFDIDKNNKDIQILSKE---LKSVESNIESIKNYAINFIDKLLAKYS 446

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+S  +    ++   +   I V +   G++                +
Sbjct: 447 KMY----HRKT--EISLIESKNAREIATKNMKIYVSL-KAGFV-----------GTSLID 488

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D++L+   D  +Y L      +         L+ D+N++++ V + +
Sbjct: 489 GEFIG---NASYYDKVLIFKKD--SYILKNIEDKTFIEKNNVSVLVYDINNSKEQVFSII 543

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEIIANT 635
           Y         +        ++ K   F+ ++ E I  T
Sbjct: 544 YLNKVDNFYYVKRFRIDKFLTDKVYYFLNKDDEFIDFT 581


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 102/289 (35%), Positives = 147/289 (50%), Gaps = 40/289 (13%)

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSW 266
           DN +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G  
Sbjct: 2   DNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRE 60

Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLM 326
            I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +D   ++    R    ++++
Sbjct: 61  TIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 120

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            +++  + ++  F +NM  L     P++M L  I+  ++ HRREV+ RR+ F ++    R
Sbjct: 121 NNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDR 179

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------------------ 416
             IL+ L IA  NID II +IR    P                                 
Sbjct: 180 AHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEW 239

Query: 417 -------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                     ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL + 
Sbjct: 240 LEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 288


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRHKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T    S      +++   +   + + ++               +     +
Sbjct: 446 KE----HQRKTKI--SLIKSKNVKEIATKNMKVYLNLAE------------GFAGTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRCKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T    S      +++   +   + + ++               +     +
Sbjct: 446 KE----HQRKTKI--SLIKSKNVKEIATKNMKVYLNLAE------------GFAGTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 155/638 (24%), Positives = 275/638 (43%), Gaps = 79/638 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++++  L + +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNMANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLYSKEITT--YEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y + PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILRAVKSELLGEA--------YKLYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 ETTDDNK-AILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIELTL-PR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +  + ++E ++  ++ +    +N+ +LS         +  I+K    H ++VL      
Sbjct: 272 GVYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIY-TVTDIIKFHAEHLQKVLKMELEL 330

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
               I  ++             +  +L       +++ I+ +E        SR  +  + 
Sbjct: 331 ERSKILEKIFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDRFSR-KIVLDD 389

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           ++ +L + +R +   +  +   ++  L  E   + S+ ++ K   N     I ++   +S
Sbjct: 390 IENLLKIPIRKISMFDIDKNNKDIQILSKE---LKSVESNIKSIKNYAINFIDKLLAKYS 446

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K       R T  E+S  +    ++   +   I V +   G++                +
Sbjct: 447 KMY----HRKT--EISLIESKNAREIATKNMKIYVSL-KAGFV-----------GTSLID 488

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   D  +Y L      +         L+ D+N++++ V + +
Sbjct: 489 GEFIG---NASYYDKILIFKKD--SYILKNIEDKTFIEKNNVSVLVYDINNSKEQVFSII 543

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEIIANT 635
           Y         +        ++ K   F+ ++ E I  T
Sbjct: 544 YLNKVDNFYYVKRFRIDKFLTDKVYYFLNKDDEFIDFT 581


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 107/191 (56%), Positives = 143/191 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L 
Sbjct: 123 DIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 206 LIDNPEISIEK 216
           L+D+ + S+E+
Sbjct: 183 LLDSKDASLEE 193


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 147/232 (63%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG  I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIM-GKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKAEIEEE-NNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +  +P++++  ++  + M+  F + M  L     PQV+ +  +L  +
Sbjct: 179 VIELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNE-PQVLNIKQVLNYY 229


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 103/201 (51%), Positives = 145/201 (72%), Gaps = 1/201 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILV 179

Query: 271 TEIPYQVQKSRLIEKIAELII 291
            E+PYQV  +RL E  A+L+ 
Sbjct: 180 XELPYQVNXARLXEXXADLVR 200


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 103/197 (52%), Positives = 145/197 (73%), Gaps = 1/197 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIV 179

Query: 271 TEIPYQVQKSRLIEKIA 287
           TE+P QV K++LIE IA
Sbjct: 180 TELPXQVXKAKLIEXIA 196


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 123/333 (36%), Positives = 183/333 (54%), Gaps = 30/333 (9%)

Query: 2   GVDNISNSNT--LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59
            V+N   S T  L++     V +   L + +L+YA   I  R + D RDG K V RRII 
Sbjct: 38  TVENFFESQTKNLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIW 97

Query: 60  AMSEMGLDFGAA-FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +M E+        +KK ARIVGEVIGK HPHGD+SVYD+LVRLAQ       LI+G GNF
Sbjct: 98  SMYEINKGSDKKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNF 157

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           G+++ ++AA  RYTEAR++     +L    +++ VD+   ++  + EP V  SK P LL 
Sbjct: 158 GSVEYNAAA-MRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLI 216

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG SGIAV + T+IPSHN+ ++  A+++ + N +I+ ++L   I GPDF TGGII+  ++
Sbjct: 217 NGCSGIAVSILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKD 276

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGS----------------------WCIVVTEIPY 275
           ++   Y  G+G   +R+    E V                            +++  +P 
Sbjct: 277 TLRNIYNTGKGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPP 336

Query: 276 QVQKSRLIEKIAELIIAKRIP---LLEDIRDES 305
            V+ + LIE I  ++  K+     +L  IRDES
Sbjct: 337 NVKPNELIENIVTVLNEKKNEHDNILSKIRDES 369


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 150/659 (22%), Positives = 273/659 (41%), Gaps = 88/659 (13%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + ++  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-AMKYHPHGDTSIYEALVNMANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L    ++   +  +Y+  ++EP++FP+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y + PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGES--------YELYPDFPTG--------GIVDVNEYADGNGKVLVRARI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E        I++ E+P+      LI  I   I    I  +  I D + E+V I L    R
Sbjct: 215 EPTDDNK-AILIKELPFGETTESLIASIERAIRKNYIK-VSSINDFTTENVEIELTL-PR 271

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  I+K    H ++VL      
Sbjct: 272 GVYASEVIEKLYHYTNCQVSISVNLLLLSERYPVIY-TITDIIKFHAEHLQKVLKMELEL 330

Query: 379 RMQAI--------DRRVEILKGLLIAYLNIDEIIAI--IRNEDKPKPVMVSRFSLTENQV 428
               I          ++ I K +      I +   +  I   +  K        +  + +
Sbjct: 331 EKSKILEKIFSKTLEQIFIEKKIYKILETISKESDVVGIVLSEILKYKDSLSRDIVLDDI 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           + +L + +R +   +  +   ++  L  E        +      +     I  V ++ +K
Sbjct: 391 ENLLKIPIRKISMFDIDKNNKDIRTLSKELR------SVESNIRSIRGYSINFVDKLLAK 444

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            + +  R+T   E+S      +++   +   + + +   G++                +G
Sbjct: 445 YSKIYHRKT---EISLIKSKNVREIATKNMKVYLNL-KAGFV-----------GTSLIDG 489

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608
           + +    +A   D+IL+   +  +Y L      +         L+ D+N+++D V + +Y
Sbjct: 490 EFIG---NASYYDKILIFKKN--SYILKNIEDKTFIDKNNVNALIYDINNSKDQVFSIIY 544

Query: 609 ---DSTCKLL-------VVSSKGNAFIVEESEI-----------IANTRKGKTFLKVSS 646
                    +        ++ K   F+ +  E             +N+R     + +  
Sbjct: 545 LSKTDNFYYVKRFKIDKFITDKVYKFLNDGDEFVDLALNPGFVEFSNSRDVVKMINIDD 603


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 136/218 (62%), Gaps = 1/218 (0%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTEA M++++  IL+ + +D +D++DTY   + +PVV PS+FPNLL  G +G A GMA
Sbjct: 1   MRYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            +IP H + +I +  LA  +NP  +I +L+E+I GPDFPT G I      I ++Y  GRG
Sbjct: 61  PNIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIF-GPSGIRKAYETGRG 119

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              +RA+  +++   G   IVVTEIPYQV K+ LIEKIA+L+  K+I  + D+RDES   
Sbjct: 120 SITIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRT 179

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
              ++    R  + ++++ +++  + ++  F +N   L
Sbjct: 180 GMRIVIEIRRDANANVILNNLYKQTALQASFGINRLAL 217


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 199/532 (37%), Gaps = 65/532 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 681  QFKPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRN 739

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 740  VKKDVKVAELSGYVLGMTA--YQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 797

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + + +  + +  EP ++    P +L NG  
Sbjct: 798  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTY-NVDDGQVIEPEIYFPVVPMILINGAE 856

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+                P  P           +V 
Sbjct: 857  GIGTGWSTSIPNYNPEEIVANLKRLMAGE-------------PLVPMEPWFRGFTGEVVS 903

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + ++G     + +TE+P +       +++ E+I A+++P  ++D
Sbjct: 904  M-----GGERYKFSGRISQIGDNE--VEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKD 956

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
             +D +       +   +       + E +     +      +  V   S GR+ +   ++
Sbjct: 957  YKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVE 1016

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             IL+E+ + R ++  +R   ++  + + +E +         I +   +I  + K +    
Sbjct: 1017 EILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVRE 1076

Query: 415  -----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                                                 +  N  D +L + L SL K    
Sbjct: 1077 LKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGEDTQIAANSYDYLLGMPLWSLTKERVE 1136

Query: 446  QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            +++ ++ +   E + +   L+        +   + E K           +RT
Sbjct: 1137 KLRRQIGDKETEIDTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERRQTKRT 1187


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 140/187 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 209 NPEISIE 215
           + + S+E
Sbjct: 182 SKDASLE 188


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 147/232 (63%), Gaps = 3/232 (1%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EA+M ++A  +L+ +++D V+F   ++ E+ EP V PS++PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            HN+ E+ +  + LIDNPE +I +L+  I GPDFPTG  I+  +  I  +Y  G+G   V
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIM-GKSGIRAAYETGKGRVIV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +EE       I+VTEIPYQV K++LIE IA+L+  K+I  + D+RDES  +   +
Sbjct: 120 RAKSEIEEE-NNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRI 178

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           +    +  +P++++  ++  + M+  F + M  L     PQV+ +  +L  +
Sbjct: 179 VIELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNE-PQVLNIKQVLNYY 229


>gi|238913907|ref|ZP_04657744.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 338

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 18/248 (7%)

Query: 522 VVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           + +S++G+++          +      SA   KE D +   L A+T D IL  S+ G+ Y
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 60

Query: 574 TLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            +    L        G  I  L+ L  N+ I        Y+    + + ++ G       
Sbjct: 61  WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTAL 120

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R   G
Sbjct: 121 TEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG 180

Query: 687 VRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           VR       G   V+   I  G    +      Y +           R   G +  K   
Sbjct: 181 VRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTE 238

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 239 RNGSVVGA 246



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 86  EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 145

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 146 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 204

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 205 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 264

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 265 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 314


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 140/187 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISIE 215
           + + S+E
Sbjct: 181 SKDASLE 187


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 108/187 (57%), Positives = 140/187 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISIE 215
           N + S+E
Sbjct: 181 NKDASLE 187


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I++
Sbjct: 121 EITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIII 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 129/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD++V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/164 (57%), Positives = 127/164 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPH D +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 140/517 (27%), Positives = 235/517 (45%), Gaps = 53/517 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGET--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I+ II +E        SR    E+ 
Sbjct: 330 QRSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVNIILSEVLSYKESFSREVFKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ +S           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSVNSSISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           K      +R T  E+S     ++++   +   + + +
Sbjct: 446 KE----HQRKT--EISLIKSKSVKEIATKNMKVYLNL 476


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 141/187 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 210 PEISIEK 216
            + S+E+
Sbjct: 183 KDASLEE 189


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 108/186 (58%), Positives = 140/186 (75%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 210 PEISIE 215
            + S+E
Sbjct: 181 KDASLE 186


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/187 (57%), Positives = 140/187 (74%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 209 NPEISIE 215
           + + S+E
Sbjct: 181 SKDTSLE 187


>gi|139439850|ref|ZP_01773215.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
 gi|133774778|gb|EBA38598.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
          Length = 339

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 18/249 (7%)

Query: 520 ITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + V I++ G+++          K     +S ++ KE D +     A T + +L  S+ GK
Sbjct: 1   MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60

Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y L    L  G     G AI  L+     + I +      + +   L+  +  G     
Sbjct: 61  VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANEYLMFATKSGMVKKT 120

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSR-G 684
             S    + R G   + +  ++ +  V +V  GD + +     K ++FS +Q+    R  
Sbjct: 121 VMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRATGRDT 180

Query: 685 KGVRLQSYKDGGISDVICFKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
            GVR    KDG    V+  ++  G         R Y +           RGG G    + 
Sbjct: 181 SGVRGIGMKDGV--SVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQM 238

Query: 744 FPRSGKFLS 752
             R G   +
Sbjct: 239 TERKGNLAA 247



 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSL 551
            F E  +       +     E +    +  G ++     + D S      A++ ++ D+L
Sbjct: 86  PFEEGEKIASVISCREFPANEYLMFA-TKSGMVKKTVMSAYDRSRRDGLIAINLRDDDAL 144

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                    D+I+L +T GKA       +    G   +    I +     ++   V +  
Sbjct: 145 LNVRRVREGDKIILATTAGKAIMFSEEQV-RATGRDTSGVRGIGMKDGVSVLGMEVTNGN 203

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTG--DHVAVVGEN 667
             L V++ +G       ++     R G+    ++++  +     +K  G    + +V E 
Sbjct: 204 GDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTERKGNLAAMKTVGPQHELFIVTEG 263

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             ++    D+I +  R   GV++ +  D      + 
Sbjct: 264 ATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVA 299



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 18/193 (9%)

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++   IA  +R+          L  RR    +         +  M  +E +      
Sbjct: 126 DRSRRDGLIAINLRD------DDALLNVRRVREGDKIILATTAGKAIMFSEEQV------ 173

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
               R+    +  +  +  K+G S+      +    + +++  G     P  +       
Sbjct: 174 ----RATGRDTSGVRGIGMKDGVSVLGMEVTNGNGDLFVITERGYGKRTPVADYPEQNRG 229

Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKV 644
           G+ +  +       ++          +L +V+       V+  EI    R   G   + V
Sbjct: 230 GQGVYTIQMTERKGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTV 289

Query: 645 SSEEKMKLVVKVT 657
              +++  V ++T
Sbjct: 290 DDNDRICAVARMT 302


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/533 (17%), Positives = 197/533 (36%), Gaps = 67/533 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 681  QFKPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKRN 739

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 740  VKKDVKVAELSGYVLGMTA--YQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 797

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + + +  + +  EP ++    P +L NG  
Sbjct: 798  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTY-NVDDGQVIEPEIYFPVVPMILINGAE 856

Query: 182  GIAVGMATSIPSHNVQEICEAALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +TSIP++N +EI      L+   P + +E       G     GG   +    I 
Sbjct: 857  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGFTGEVVSMGGERYKFSGRIS 916

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLE 299
            +                      G   + +TE+P +       +++ E+I A+++P  ++
Sbjct: 917  QI---------------------GDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIK 955

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D +D +       +   +       + E +     +      +  V   S GR+ +   +
Sbjct: 956  DYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESV 1015

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
            + IL+E+ + R ++  +R   ++  + + +E +         I +   +I  + K +   
Sbjct: 1016 EEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVR 1075

Query: 415  ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                                  +  N  D +L + L SL K   
Sbjct: 1076 ELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERV 1135

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             +++ ++ +   E   +   L+        +   + E K           +RT
Sbjct: 1136 EKLRRQIGDKETEINTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERRQTKRT 1187


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 138/283 (48%), Gaps = 20/283 (7%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           ++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F       
Sbjct: 120 MKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP---- 175

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
                  ++         + +I  E + V I++RG+I+          K       A+  
Sbjct: 176 ----RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTT 231

Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
            + D ++    A+T D ++ ++  G+ Y L    +  G    +
Sbjct: 232 YDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 277/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITV--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVRSELLGET--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH ++VL      
Sbjct: 271 GVYASEVIEKLYHYTNCQVSISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKVLKMELEL 329

Query: 379 RMQAI--------DRRVEILKGLLIAYLNI---DEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I          ++ I K +      I   + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKFLETISKEENIVSIILSEILRCKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + ++ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LRTINSNISSIKGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++  G++                +
Sbjct: 446 KD----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +     A   D++L+   +   Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---SASYYDKVLVFRKNN--YVLKNIEDKAFIDKKNICALVYDINNSKEQIFSII 542

Query: 608 Y---DSTCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YLNKLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/164 (58%), Positives = 128/164 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  +L  +++D VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
              Y+  +  P V P++ PNLL NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/199 (48%), Positives = 140/199 (70%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +SL   L +R+  Y+   I+ERA+PD+RDG KPV RRI++AM   G      F+KSA+ V
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           AE +L+ ++++ V F   Y++   EP+V PS+FPNLL NG++GI+ G AT IP HN+ E+
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 200 CEAALALIDNPEISIEKLL 218
            +A L  IDNP+I++ +L+
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/453 (29%), Positives = 212/453 (46%), Gaps = 46/453 (10%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +L YA   I++RAIPDL DG KPV RRI+H++ EM       F K A ++G    K HPH
Sbjct: 9   FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH-CMKYHPH 64

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVD 148
           GD S+ ++LV LA   +     I  QGNFGNI  GD A+A RY E R+   A+ I    +
Sbjct: 65  GDASIGNALVVLASKEL----FIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTIF--YN 118

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
               D+  +Y+  + EP+ F +K P +LA G  GIAVGM+T I  HN+ EI EA  A + 
Sbjct: 119 PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEKAFLS 178

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
                      + + PDFPTGG+I  S       Y  G G   VRA+    +  R    I
Sbjct: 179 GKS--------FALFPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSDEKR----I 220

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           V+ E+P+      +I  I     A ++  + +I D + E V I L    R +    ++++
Sbjct: 221 VIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGEKVEIEL-KLPRGVYSADVVDA 278

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           ++  ++ E   P N+ V+    +P  + +  I+K       ++L     +    +  R+ 
Sbjct: 279 LYAFTECEQSIPCNLLVI-KDNLPVQITVTDIIKYHAKQLMQILKDELEYERAMLTERLH 337

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------FSLTENQVDAILNLRL 436
           +    L      + I   I      + V+ +               +TE+ VD +L + +
Sbjct: 338 LRT--LERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDVDKLLKIPI 395

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
           R +   +  + + E+  +    ++I  LL + K
Sbjct: 396 RRISLYDINKNREEVREINNRLKEIAKLLKNLK 428


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+++VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ +++D
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV P++FPNLL NG +GIAVGMAT+IP H + E+ +  LA+   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I++ +L+E I GPDFPT G+I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/533 (17%), Positives = 198/533 (37%), Gaps = 67/533 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 777  QFKPGTFLDHTTDEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKRN 835

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 836  VKKDVKVAELSGYVLGMTA--YQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 893

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + + +  + +  EP ++    P +L NG  
Sbjct: 894  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTY-NVDDGQVIEPEIYFPVVPMILINGAE 952

Query: 182  GIAVGMATSIPSHNVQEICEAALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +TSIP++N +EI      L+   P + +E       G     GG   +    I 
Sbjct: 953  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGFTGEVVSMGGERYKFSGRIS 1012

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLE 299
            +                      G   + +TE+P +       +++ E+I A+++P  ++
Sbjct: 1013 QI---------------------GDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIK 1051

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D +D +       +   +       + E +     +      +  V   S GR+ +   +
Sbjct: 1052 DYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESV 1111

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
            + IL+E+ + R ++  +R   ++  + + +E +         I +   +I  + K +   
Sbjct: 1112 EEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVR 1171

Query: 415  ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                                  +  N  D +L + L SL K   
Sbjct: 1172 ELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERV 1231

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             +++ ++ +   E + +   L+        +   + E K           +RT
Sbjct: 1232 EKLRRQIGDKETEIDTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERRQTKRT 1283


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/178 (57%), Positives = 133/178 (74%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 63  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 204/532 (38%), Gaps = 68/532 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++      
Sbjct: 697  QFKPGTFLDHSVDKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFRRN 755

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 756  LRKDMKVVELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 813

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 814  GGQDCASARYIYTRLSPFARRVFHAADDPLLTYNE-DDGKKIEPEVYVPVVPMILINGAD 872

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D   +           P F      V        
Sbjct: 873  GIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKPM-------QPWFRGFTGEV-------- 917

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 918  ---TALGGDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 972

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    ++L               +T    N+      GR+ +   +D
Sbjct: 973  YKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1032

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+ A R +   RR  +++  + + ++ L         I +   +I  + KP     
Sbjct: 1033 DILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAE 1092

Query: 414  ---------------------KPVMVSRFSLTENQ--------VDAILNLRLRSLRKLEE 444
                                  PV+      + N          D +L + L SL     
Sbjct: 1093 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1152

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKSTDLGRR 495
             +++ ++     E + +  L  S +  W + +   I E +          R+
Sbjct: 1153 EKLRRQIGEKEVEIDALIKL--SKEDIWKRDLDDFINEWRFQLEDEARRQRK 1202


>gi|218516786|ref|ZP_03513626.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 167

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/167 (57%), Positives = 132/167 (79%)

Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
           HGE +++++D++++Q ++TAFV+D   K L+VS+ GN F+V E+E+IANTRKGK  + V+
Sbjct: 1   HGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELIANTRKGKQIMNVA 60

Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705
             E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRLQ YKDGGISDV CF +
Sbjct: 61  LPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRLQRYKDGGISDVRCFAM 120

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            +GL W DSAGR++ +++++L  WLG R   G  VPKGFPRSGKF  
Sbjct: 121 SDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKFAG 167


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/531 (19%), Positives = 201/531 (37%), Gaps = 66/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++      
Sbjct: 697  QFKPGTFLDHSVDKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFRRN 755

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 756  LRKDMKVVELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 813

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 814  GGQDCASARYIYTRLSPFARRVFHAADDPLLTYNE-DDGKKIEPEVYVPVVPMILINGAD 872

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D   +           P F      V        
Sbjct: 873  GIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKPM-------QPWFRGFTGEV-------- 917

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 918  ---TALGGDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 972

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    ++L               +T    N+      GR+ +   +D
Sbjct: 973  YKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1032

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+ A R +   RR  +++  + + ++ L         I +   +I  + KP     
Sbjct: 1033 DILKEFYAVRLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAE 1092

Query: 414  ---------------------KPVMVSRFSLTENQ--------VDAILNLRLRSLRKLEE 444
                                  PV+      + N          D +L + L SL     
Sbjct: 1093 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1152

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++     E + +   L+        +   I E +          R+
Sbjct: 1153 EKLRRQIGEKEVEIDALIK-LSKEDIWKRDLDDFINEWRFQLEDEARRQRK 1202


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 129/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 97/165 (58%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGES--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K   AH +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL        I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKRIYKLLETISKEGNIVSIILSEVLRYKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   +  + ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKGINSNISSIKGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T    S      +++   +   + + ++  G++                +
Sbjct: 446 KE----HQRKTKI--SLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSII 542

Query: 608 YD---STCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YFNRLDNFYYVKRFKIDKFITDKVYEFLGENDEFV 577


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 137/277 (49%), Gaps = 20/277 (7%)

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ RR+ 
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVIIRRTI 59

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434
           F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL++
Sbjct: 60  FELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDM 119

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F        
Sbjct: 120 KLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP----- 174

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFK 546
                 ++         + +I  E + V I++RG+I+          K       A+   
Sbjct: 175 ---RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           + D ++    A+T D ++ ++  G+ Y L    +  G
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG 268


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/165 (58%), Positives = 130/165 (78%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VR+AQPF   Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 127/163 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 98/165 (59%), Positives = 131/165 (79%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +V
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           YD++VRLAQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/579 (16%), Positives = 214/579 (36%), Gaps = 78/579 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++     ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 777  QFKPGTFLDHTTDEITYTDFVNKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRN 835

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HG+QS+  +++ LAQ F        +   GNFG+   
Sbjct: 836  VKKDVKVAELSGYVLGMTA--YQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 893

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    DE  + + +  + +  EP ++    P +L NG  
Sbjct: 894  GGSDAASPRYIYTRLSPFARRIFHEADEPLLTY-NVDDGQVIEPEIYFPVVPMILINGAE 952

Query: 182  GIAVGMATSIPSHNVQEICEAALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +TSIP++N +EI      L+   P + +E       G     GG   +    I 
Sbjct: 953  GIGTGWSTSIPNYNPEEIVANLKRLMAGEPLVPMEPWFRGFTGEVVSMGGERYKFSGRIS 1012

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLE 299
            +                      G   + +TE+P +       +++ E+I A+++P  ++
Sbjct: 1013 QI---------------------GDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIK 1051

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
            D +D +       +   +       + E +     +      +  V      R+ +   +
Sbjct: 1052 DYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDPEGRITKYESV 1111

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--- 414
            + IL+E+ + R ++  +R   ++  + + +E +         I +   +I  + K +   
Sbjct: 1112 EEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVR 1171

Query: 415  ------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                                  +  N  D +L + L SL K   
Sbjct: 1172 ELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERV 1231

Query: 445  YQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
             +++ ++ +   E + +  L               +   ++ E +   +K T   RR +T
Sbjct: 1232 EKLRRQIGDKETEIDTLIKLSKEDIWTADLDDFLAEWKFQLEEEERQQTKRTKSARRVST 1291

Query: 499  FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537
              + +       ++A  + +      S+ G ++  KS  
Sbjct: 1292 KLKTAATKGGKKRKAADDDD------SDFGLLKPKKSGK 1324


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/517 (26%), Positives = 235/517 (45%), Gaps = 53/517 (10%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTLLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITI--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILNAVKSELLGET--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K    H ++VL      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHADHLQKVLKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLRCKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           ++ +L + +R +   +  +   ++  L  E   +  + ++           I  +   +S
Sbjct: 389 IENLLKIPIRKISLFDIDKNSKDIKILNKE---LKIINSNISSIKEYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           K      +R T  E+S      +++   +   + + +
Sbjct: 446 KE----HQRKT--EISLIKSKNVKEIATKNMKVYLNL 476


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 158/635 (24%), Positives = 282/635 (44%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+  GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITV--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTGGI+  +       Y  G G   VRA+  +
Sbjct: 171 ILSAVKSELLGET--------YDIYPDFPTGGIVDVNE------YADGNGKILVRAK--I 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETLD--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I  ++           + +  LL      + I++II +E        SR  L E+ 
Sbjct: 330 QKSKILEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLKYKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNFKDIKILNKE---LKSVNSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++  G++                +
Sbjct: 446 KD----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILIFREN--SYVLKNIEDKAFIDKKNICALVYDINNSKEQIFSII 542

Query: 608 YDSTCKLL----------VVSSKGNAFIVEESEII 632
           Y +                ++ K   F+ E  E +
Sbjct: 543 YLNKLDKFYYIKRFKIDKFITDKVYEFLGENDEFV 577


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 95/175 (54%), Positives = 123/175 (70%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE +   +L   ++E YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           K A+I G+  G  HPHG+  +Y +LVR+AQ +  RYPL+ GQGNFG+IDGD AAA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           AR+T  A  +L+ +D+D VD    Y+E   EPVVFPSKFPNLL NG+SGIAVGMA
Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 278/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITV--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGET--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAI--------DRRVEILKGLLIAYLNIDE---IIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I          ++ I K +      I +   I++II +E        SR  L E+ 
Sbjct: 330 QRNKIFEKIFYKTLEQIFIEKKIYKLLETISKEGNIVSIILSEVLKYKESFSREVLKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSVNSNISSIRGYSINFIDLLLSKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++  G++                +
Sbjct: 446 KY----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFRKN--SYVLKNIEDKAFIDKKNICALVYDINNSKEQIFSII 542

Query: 608 Y---DSTCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YLNKLDNFYYIKRFKIDKFITDKVYEFLGENDEFV 577


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 94/533 (17%), Positives = 196/533 (36%), Gaps = 67/533 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ 
Sbjct: 773  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLN 831

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 832  VKKDMKVAELSGYVLGLTA--YQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + + +  + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTY-NVDDGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+             +  P  P           +V 
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVS 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +      ++G     I +TE+P +       +++ E+I A++IP  ++D
Sbjct: 996  M-----GGERYKFSGRFSQIGDNE--IEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
             +D +       +   +       + E +     +      +  V   S GR+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             IL+E+ + R ++  +R   ++  + + +E L         I +   +I  + K +    
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVISKKPKAQLVQE 1168

Query: 415  -------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                                   L  N  D +L + L SL K  
Sbjct: 1169 LKEKGFKAIAKVSDAAKQGEKAPVVNRDDEESSDSEDTELAANSFDYLLGMPLWSLTKER 1228

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
              +++ ++ +   E + +   L+        +   + E K           +R
Sbjct: 1229 VEKLRRQIGDKEIEIDTLIK-LSKEDIWRADLDAFLEEWKFQLEDEGRRQAKR 1280


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 94/533 (17%), Positives = 196/533 (36%), Gaps = 67/533 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ 
Sbjct: 773  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLN 831

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 832  VKKDMKVAELSGYVLGLTA--YQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + + +  + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTY-NVDDGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+             +  P  P           +V 
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVS 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +      ++G     I +TE+P +       +++ E+I A++IP  ++D
Sbjct: 996  M-----GGERYKFSGRFSQIGDNE--IEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
             +D +       +   +       + E +     +      +  V   S GR+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             IL+E+ + R ++  +R   ++  + + +E L         I +   +I  + K +    
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVISKKPKAQLVQE 1168

Query: 415  -------------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                                   L  N  D +L + L SL K  
Sbjct: 1169 LKEKGFKAIAKVSDAAKQGEKAPVVNRDDEESSDSEDTELAANSFDYLLGMPLWSLTKER 1228

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
              +++ ++ +   E + +   L+        +   + E K           +R
Sbjct: 1229 VEKLRRQIGDKEIEIDTLIK-LSKEDIWRADLDAFLEEWKFQLEDEGRRQAKR 1280


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/190 (53%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/532 (18%), Positives = 202/532 (37%), Gaps = 68/532 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+ ++    + +  + ++++   +R+IP + DG KP  R++++      
Sbjct: 769  QFKPGTFLDHSVEKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFRRN 827

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 828  LKKDMKVVELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + +  EP V+    P +L NG  
Sbjct: 886  GGQDCASARYIYTRLSPFARRMFHAADDPLLTYNE-DDGKKIEPEVYVPVVPLILINGAD 944

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D+  +           P F      V        
Sbjct: 945  GIGTGWSSSIPNYNPEDIVDNLKRLMDSQPVKPM-------QPWFRGFTGEV-------- 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 990  ---TALGGDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKD 1044

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +         V      R+ +   +D
Sbjct: 1045 YKDYNTHTKVHFVIQMDEKNIKSAVAEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1104

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+ A R +   RR  +++  + + ++ L         I +   +I  + KP     
Sbjct: 1105 DILKEFYAVRLKFYERRKQYQLSELQKELDKLTNQARFVQMIIDGDLVISKKKKPVLVAE 1164

Query: 414  ---------------------KPVMVSRFSLTENQ--------VDAILNLRLRSLRKLEE 444
                                  PV+      + N          D +L + L SL     
Sbjct: 1165 LKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERV 1224

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKSTDLGRR 495
             +++ ++     E + +  L  S +  W + +   I E +          R+
Sbjct: 1225 EKLRRQIGEKEVEMDALIKL--SKEDIWKRDLDDFINEWRFQLEDEARRQRK 1274


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 155/635 (24%), Positives = 277/635 (43%), Gaps = 80/635 (12%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQ 138
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN + GD A+A RY E R+T 
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +A  +L   +     +  +Y+  ++EP+++P+K P +L  G+ GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLYSKEITV--YESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           I  A  + +            Y I PDFPTG         IV+      G  +V  R  +
Sbjct: 171 ILSAVKSELLGET--------YDIYPDFPTG--------GIVDVNEYADGNGKVLVRAKI 214

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V I L    R
Sbjct: 215 ETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVAIELSL-PR 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            +    ++E ++  ++ +    +N+ +LS         +  ++K    H +++L      
Sbjct: 271 GVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHADHLQKILKMELEL 329

Query: 379 RMQAI--------DRRVEILKGLLIAYLNI---DEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           +   I          ++ I K +      I   + I++II +E        SR    E+ 
Sbjct: 330 QRNKIFEKIFYKTLEQIFIEKKIYKLLETISKEENIVSIILSEVLKYKESFSREVFKED- 388

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           V+ +L + +R +   +  +   ++  L  E   + S+ ++           I  +   +S
Sbjct: 389 VENLLKIPIRKISLFDIDKNSKDVKILNKE---LKSVNSNISSIRGYSINFIDLLLAKYS 445

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
           K      +R T  E+S      +++   +   + + ++  G++                +
Sbjct: 446 KD----HQRKT--EISLIKSKNVKEIATKNMKVYLNLAE-GFV-----------GTSLFD 487

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
           G+ +    +A   D+IL+   +  +Y L      +         L+ D+N++++ + + +
Sbjct: 488 GEFIG---NASYYDKILVFRKN--SYVLKNIEDKAFIDKKNICALVYDINNSKEQIFSII 542

Query: 608 Y---DSTCKLL-------VVSSKGNAFIVEESEII 632
           Y         +        ++ K   F+ E  E +
Sbjct: 543 YLNKLDNFYYIKRFKIDKFITDKVYEFLGENDEFV 577


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 133/230 (57%), Gaps = 9/230 (3%)

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           P QV K++LIEKIA+L+  K+I  + D+RDES      ++    R  + ++++ +++  +
Sbjct: 2   PSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 61

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
            ++T F +N+  L  G+ P+V+ L   L+ +L H++ V+ RR+++ ++  + R  IL+GL
Sbjct: 62  ALQTSFGINLLALVDGQ-PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGL 120

Query: 394 LIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            +A  ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E
Sbjct: 121 RVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEE 180

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +L+    ++  +L +  +    I  E+ E+KE F+       RRT   
Sbjct: 181 YQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE-----RRTEIV 225


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+RD Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I+ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQIL-GRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 102/190 (53%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E  LA+ +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+ ++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 EITNQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 130/163 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           F D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 102/196 (52%), Positives = 142/196 (72%), Gaps = 1/196 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIV 179

Query: 271 TEIPYQVQKSRLIEKI 286
            E+ YQ  K+ LIEKI
Sbjct: 180 PELXYQXNKAXLIEKI 195


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 128/163 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+++ L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 106/183 (57%), Positives = 137/183 (74%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 211 EIS 213
           + S
Sbjct: 181 DAS 183


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +++I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 195/534 (36%), Gaps = 71/534 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 781  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRN 839

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 840  VRKDIKVVELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 897

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + + +  +    EP ++    P +L NG  
Sbjct: 898  GGSDSASARYIYTRLSPFARRIFHPADEPLLTY-NVDDGHTIEPEIYVPVVPLVLINGAD 956

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D               P  P           +V 
Sbjct: 957  GIGTGWSTSIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVV- 1002

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + +V  G   + +TE+P +       +++ E+I A+++P  ++D
Sbjct: 1003 ----SLGGERYKFSGRISQV--GENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 1056

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 1057 YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPE 1116

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             IL+E+ + R +   +R  +++  + R ++ L         I +   +I  + K K    
Sbjct: 1117 DILREFYSVRIKFYEKRKQYQLSQLQRDLDKLSNQARFIQMIIDGKLVISKKPKAKLIQE 1176

Query: 415  -------------------------PVMVSRFSLTENQV-------DAILNLRLRSLRKL 442
                                         +      +         D +  + L SL + 
Sbjct: 1177 LKEKGFKAFSKISDAAKSGETAPVVEEDDNEEKSDSDDAELGADSYDYLFAMPLWSLTQE 1236

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
               +++ ++     E + +   L+        +   I E K         GRRR
Sbjct: 1237 RVEKLRRQIGEKEIEVDNLIK-LSKEDIWRKDLDDFIAEWKFQLEDE---GRRR 1286


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/188 (52%), Positives = 137/188 (72%), Gaps = 1/188 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQ 278
           TE+PYQV 
Sbjct: 180 TELPYQVN 187


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 103/536 (19%), Positives = 206/536 (38%), Gaps = 68/536 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 780  QFKPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 838

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 839  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 896

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP V+    P +L NG  
Sbjct: 897  GGSDCASARYIYTRLSPFARRIFHASDEPLLTY-NVDDGKTIEPEVYMPVVPMILINGAD 955

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++          E I        G   E       
Sbjct: 956  GIGTGWSSSIPNYNPEDVVDNLKRLMNG---------EEIKPMQPWFRGFTGEV------ 1000

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D
Sbjct: 1001 ---TSIGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 1055

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    + L   +           +T    N+      GR+ +   +D
Sbjct: 1056 YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1115

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             ILKE+ A R +   RR  +++  + + +E L         I +   ++  + K      
Sbjct: 1116 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVE 1175

Query: 413  ---------PKPVMVSRFSLT-------------------ENQVDAILNLRLRSLRKLEE 444
                     PK    ++                        N  D +L + + SL +   
Sbjct: 1176 LKDKGFKPFPKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERV 1235

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKSTDLGRRRTTF 499
             +++ ++ +   E + +  L  S +  W + +   I E +          R+ T  
Sbjct: 1236 ERLRRQIGDKEMEIDTLIKL--SKEDIWKRDLDDFINEWRFQLDDEARRMRKVTNM 1289


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 103/536 (19%), Positives = 206/536 (38%), Gaps = 68/536 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 775  QFKPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 833

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 834  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 891

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP V+    P +L NG  
Sbjct: 892  GGSDCASARYIYTRLSPFARRIFHASDEPLLTY-NVDDGKTIEPEVYMPVVPMILINGAD 950

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++          E I        G   E       
Sbjct: 951  GIGTGWSSSIPNYNPEDVVDNLKRLMNG---------EEIKPMQPWFRGFTGEV------ 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D
Sbjct: 996  ---TSIGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 1050

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    + L   +           +T    N+      GR+ +   +D
Sbjct: 1051 YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1110

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             ILKE+ A R +   RR  +++  + + +E L         I +   ++  + K      
Sbjct: 1111 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVE 1170

Query: 413  ---------PKPVMVSRFSLT-------------------ENQVDAILNLRLRSLRKLEE 444
                     PK    ++                        N  D +L + + SL +   
Sbjct: 1171 LKDKGFKPFPKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERV 1230

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKSTDLGRRRTTF 499
             +++ ++ +   E + +  L  S +  W + +   I E +          R+ T  
Sbjct: 1231 ERLRRQIGDKEMEIDTLIKL--SKEDIWKRDLDDFINEWRFQLDDEARRMRKVTNM 1284


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 96/166 (57%), Positives = 129/166 (77%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD+
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203
           Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+    
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 139/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D+ D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ +  LA+ +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           EI+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 EITIQELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 106/185 (57%), Positives = 139/185 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           L Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 211 EISIE 215
           + S+E
Sbjct: 184 DASLE 188


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 120/158 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y  YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D
Sbjct: 61  HGDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLD 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           ++ VD+   Y+  +  P V P+K PNLL NG+SGIAVG
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +++   G   IVV
Sbjct: 121 DITISELMEFIPGPDFPTAGKIL-GRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVV 179

Query: 271 TEIPYQVQKS 280
           TEIPYQV K+
Sbjct: 180 TEIPYQVNKA 189


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1061

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 195/462 (42%), Gaps = 43/462 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++I++  +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E     + HG+ S+  ++V LAQ +        +  +G FG+    G
Sbjct: 678  TDVKVAQFSGYVAE--HSAYHHGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGG 735

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+SGI
Sbjct: 736  KDHASARYIYMKLNPQTRQVFVDTDDNLLKYMY-DDGDKIEPEYYVPVIPSILVNGSSGI 794

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS+N ++I +    L     IS E L+E         G I+           
Sbjct: 795  GTGWSTNIPSYNPKDIVDNVKRL-----ISGEDLVEMKPWYKGFKGKIM----------- 838

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G +  +  +    +  G   IVV+E+P         E +  L+  K I    +   
Sbjct: 839  ETSPGVYVTKGLY----MPNGK-TIVVSELPIGKWTQDYKEHLDGLLEKKIISDFREKHS 893

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
            ++      VLF  +   +P+  ++ + + + + +    NM+     G++ +      I++
Sbjct: 894  DTD-----VLFEIDFVGNPN--IDILKLETTIRST---NMHAFDPSGKIKKYDTPLDIIR 943

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDE-IIAIIRNEDKPKPVMVS 419
            EW   R+++  +R ++ ++ +  R  I   K   I  +N DE II           +   
Sbjct: 944  EWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKL 1003

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            +F   +++ D +LN+R+ SL      ++K E   L  E + +
Sbjct: 1004 KFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDL 1045


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 98/190 (51%), Positives = 138/190 (72%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G G FG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +E+   G   I+V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 123/160 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D
Sbjct: 61  HGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLD 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           ++ VD+   Y+  +  P V P+K P LL NG+SGIAVGMA
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1218

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 188/495 (37%), Gaps = 66/495 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  +SL   +    + ++++    R+IP   DGFKP  R+I+ A  +  L  
Sbjct: 727  PGTYMDHSVTEISLPDFINRELILFSMAD-NARSIPSSVDGFKPGQRKILFACFKRNLKS 785

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+QS+  ++V +AQ F       ++   G FG     G 
Sbjct: 786  EIKVAQLAGYVAE--HSAYHHGEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQGGK 843

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    +T +A  +    D+  + +    + ++ EP  +    P LL NG  GI 
Sbjct: 844  DAASPRYIFTNLTPLARTVFHPSDDPLLTYL-VDDGQNIEPEWYLPVLPMLLVNGADGIG 902

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I E    L+       E+L E        +G I  E+ E       
Sbjct: 903  TGWSSSIPNYNPRDIVECLHRLMR-----HEELFEIHPWYRGFSGKIERETPE------- 950

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIR 302
                  R +   C+ ++      + +TE+P +       E++   +    K+   ++D +
Sbjct: 951  ------RYKVTGCIRKIDSN--TVEITELPIRTWTQSYKEQLEAWLTGTEKQTAWIKDYK 1002

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM--GRVPQVMPLDGI 360
            +   +     +             E +     + +   ++  V     GR+ +   +  I
Sbjct: 1003 EYHTDSKVHFIVTLTDQAMSLAESEGLEKRFKLISSVSVSNIVCFDLEGRIRKYDGVQDI 1062

Query: 361  LKEWLAHRREVLFRRSSFRMQ-----------AIDRRVEILKGLLIAYLN--IDEIIAII 407
            +K++   R     +R +  +Q            +    EI+ G L+      ID +  ++
Sbjct: 1063 IKDFYELRLSYYQKRKNHMLQTLTFEYERLESKVRFVTEIITGKLVVQNRKRIDLLKELV 1122

Query: 408  RN--------------------EDKPKPVMVSRFSLTENQ-VDAILNLRLRSLRKLEEYQ 446
                                   D       S       Q  D +L++ + +L   +  Q
Sbjct: 1123 TRKYKLIPKKKAGSEATNGSEGSDDANDGDESVQDDDPRQGYDYLLSMPIWNLTWEKVQQ 1182

Query: 447  IKSELDNLLAEKEKI 461
            ++ E+ +   E + +
Sbjct: 1183 LQKEMQDREDEIKAL 1197


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 205/532 (38%), Gaps = 70/532 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+ ++    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 702  QFKPGTFLDHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 760

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 761  LKKDMKVVELAGHVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 818

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP V+    P +L NG  
Sbjct: 819  GGSDCASARYIYTRLSPFARRIFHASDEPLLTY-NVDDGKTIEPEVYMPVVPMILINGAD 877

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++ +    L++          E I        G   E       
Sbjct: 878  GIGTGWSSSIPNYNPEDVVDNLKRLMNG---------EEIKPMQPWFRGFTGEV------ 922

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D
Sbjct: 923  ---TSIGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 977

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    + L   +           +T    N+      GR+ +   +D
Sbjct: 978  YKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1037

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             ILKE+ A R +   RR  +++  + + +E L         I +   ++  + K      
Sbjct: 1038 DILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVE 1097

Query: 413  ---------PKPVMVSRFSLT-------------------ENQVDAILNLRLRSLRKLEE 444
                     PK    ++                        N  D +L + + SL +   
Sbjct: 1098 LKDKGFKPFPKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERV 1157

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             +++ ++ +   E + +  L  S +  W     ++ +    +    D   RR
Sbjct: 1158 ERLRRQIGDKEMEIDTLIKL--SKEDIW---KRDLDDFINEWRFQLDDEARR 1204


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 101/509 (19%), Positives = 193/509 (37%), Gaps = 67/509 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R++++      
Sbjct: 769  QFKPGTFLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVIDGLKPGQRKVLYVSFRRN 827

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 828  LKKDMKVVELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + +  EP  +    P LL NG  
Sbjct: 886  GGQDCASARYIYTRLSPFARRMFHPADEPLLTY-NVDDGKQIEPENYVPVVPLLLINGAD 944

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D            I        G   E       
Sbjct: 945  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEP---------IKPMQPWFRGFNGEV------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ E+I A + P  ++D
Sbjct: 990  ---TAIGGDRFKFSGIIKEA--GDKEVEITELPIRTWTQDFKDKLEEIIKADKTPSFIKD 1044

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    VR V+    + +   L           +T    N+      GR+ +   +D
Sbjct: 1045 YKDYNTHTKVRFVIQMDEKHMQSALSEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVD 1104

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+   R +   RR  +++  + R ++ L         I +   +I  + KP     
Sbjct: 1105 DILKEFFTVRLKFYERRKQYQLSELQRELDKLSNQARFVQMIIDGALVISKKKKPVLIAE 1164

Query: 414  -----------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                         +        +  N  D +L + L SL +   
Sbjct: 1165 LKEKGFKAIPKVADAVKAGEDEPVVEEGEESEEAEDTEVQSNAYDYLLGMSLWSLTQERV 1224

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
             +++ ++     E + +  L  S +  W 
Sbjct: 1225 EKLRRQIGEREVEIDALIKL--SKEDIWK 1251


>gi|290790184|pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
 gi|290790185|pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
          Length = 370

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 49/291 (16%)

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALH--------FKEGDSLKIALHAHTTDRI 563
             +I  E + V +S+ G+ +     +                KE D +      +T D +
Sbjct: 1   MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           L  ++ GK + LP   L        G  I   I L   + +        Y     + + +
Sbjct: 61  LTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMAT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQ 677
             G       SE      +GK  + +   + +  V    GD  V +   N K + F    
Sbjct: 121 RNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGEST 180

Query: 678 IPEMSR-GKGVRLQSY-------------KDGGISDVI-------CFKICEGLT------ 710
           +  M R   GVR                 + GG+ D +         +  +G        
Sbjct: 181 VRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240

Query: 711 --------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                    + +    Y +           RG  G +  +   R+GK + +
Sbjct: 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRA 291



 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 50/267 (18%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              E     +A L            + +  G ++                A++  EGD+L
Sbjct: 93  IPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDAL 152

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD-- 609
                      +LL +++GK        + S       ++  I L   +++V+  V +  
Sbjct: 153 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG-IRLAKGEEVVSLIVSERA 211

Query: 610 ---------------------------------STCKLLVVSSKGNAFIVEESEIIANTR 636
                                                +L  +  G       +E     R
Sbjct: 212 GGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGR 271

Query: 637 KGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691
             +  + + + E+    ++ V+  + D V ++ +   L+     +I  + R  +GV L  
Sbjct: 272 GTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIR 331

Query: 692 YKDGGISDVIC---FKICEGLTWIDSA 715
              G     +      + E    +D A
Sbjct: 332 LSKGEKLQAVERLDASLEEPEDVVDEA 358


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 140/190 (73%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E+I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/505 (20%), Positives = 188/505 (37%), Gaps = 70/505 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ NV  +S    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 762  EPGTHLDHNVSQISYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 820

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +      E     + HG+QS+  ++V LAQ F       ++S  G FG     G
Sbjct: 821  AEIKVAQLGGYCAE--HSAYHHGEQSLTQTIVALAQNFVGSNNINVLSPNGQFGTRANGG 878

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++   I    D+  +++    +    EP  +    P +L NG+SGI
Sbjct: 879  KDAASARYIFTNIEKITRAIFPPQDDHVLNYL-NDDGAQIEPEWYVPVLPMVLVNGSSGI 937

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N  +I E         ++S E L          TG I  E         
Sbjct: 938  GTGWSSDIPNYNPMDIVENLRR-----KLSDEPLEPIYPWFRGFTGHITPE--------- 983

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-----IPLL 298
                G F+V   W   +       + +TE+P +V      E +   I +       +   
Sbjct: 984  --APGKFKVTGEWNQPDED----TVEITELPIRVWNLTYKELLEAWITSTDKVPALVKDY 1037

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             +   E+     I L  K +       +E +F L+   +   +     S G++ +    +
Sbjct: 1038 REYHTETTVHFIIQLTDKGKEAIKKDGLEKVFKLTGNVSTTNMVCFD-SFGKIKKYSTPE 1096

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL+++   R E   +R  F +Q +    E L       L I E   II N  K + V+ 
Sbjct: 1097 EILEDFYDIRLEYYQKRKEFLVQDLTTTYERLSNQARFVLMIIEKKLIINNRKKAEVVID 1156

Query: 419  SR---------------------------------FSLTENQVDAILNLRLRSLRKLEEY 445
             R                                    +    D +L++ +  L   +  
Sbjct: 1157 LRKLDFRPFPRKPKPKTAGDPDQVGEDDQEEEEHDEVESAGDYDYLLSMAISRLTAEQVA 1216

Query: 446  QIKSELDNLLAEKEKIDSLLNSGKQ 470
            ++ +E D    +++ +  LL    +
Sbjct: 1217 KLLAERDE---KEKDLQILLGKTAK 1238


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 126/191 (65%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           E  + + L   L +R+  Y+   I++RA+PD+RDG KPV RRI++AM   G      F+K
Sbjct: 8   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGNTNEKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG VIG  HPHGD SVYD++VR++Q +  R  L+   GN G+IDGD  AA RYTEA
Sbjct: 68  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++ ++  +L+ +++  VDF   +++  SEP V P+ FPNLL NG++GI+ G AT IP H
Sbjct: 128 RLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATEIPPH 187

Query: 195 NVQEICEAALA 205
           ++ EI +  + 
Sbjct: 188 HLGEIIDGVIM 198


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/602 (17%), Positives = 212/602 (35%), Gaps = 76/602 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + +S    +    + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 780  EPGTYLDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLI 838

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V +     + HG+QS+  ++V LAQ F        +   GNFG+    G
Sbjct: 839  HDQKVVELAGYVSK--EAAYHHGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGG 896

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY   R++ +A  I   +DE  ++F+   + +  EP V+    P +L NG  GI
Sbjct: 897  SDAASARYIHTRLSPLARKIFHPLDEPNLEFQF-DDGKLIEPKVYAPILPMVLVNGADGI 955

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG-PDFPTGGIIVESRESIVES 242
              G +TSIP+++  +I E     +        +   +    P F       E        
Sbjct: 956  GTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEPMTPWFRGWKGTPEP------- 1008

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDI 301
                 G  + +    VE   +    + VTE+P ++       K+ E+I   + P  ++D 
Sbjct: 1009 ----DGPNKFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDY 1064

Query: 302  RDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDG 359
            ++ +    V  ++  + + +   L    I      +T    N+       ++ +      
Sbjct: 1065 KEYNDHQTVHFIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQE 1124

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
            I++E+  +R  +   R    ++        L+        I E   I+  + K       
Sbjct: 1125 IMEEYYHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLIVAKKKKSVLVQEL 1184

Query: 413  -------------------PKPVMVSRFSLTENQV-------DAILNLRLRSLR-----K 441
                               P   + +  +  E          D +L++ + SL      K
Sbjct: 1185 RERKYEAFPPKSDGRNVKSPDEELGAAENEDEEDAVGGARDYDYLLSMPIWSLTFERLDK 1244

Query: 442  LEEYQ--IKSELDNLLAE-------------KEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            L++     K+E D L A                + +  L    +   +I  + R V    
Sbjct: 1245 LKQQIAAKKAEYDELDALSEKDLWCKDLDAFTAEWEEQLRLEDEVRKEIRQKGRRVSYKG 1304

Query: 487  SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               + L + R    +      A   +A    +  TV    R   +          +  F 
Sbjct: 1305 GAVSRLKKPRAAKDDEDFEPGAKKPRAKAAPKAETVKTQQRFLEKFSGLAKPKPKSTAFA 1364

Query: 547  EG 548
            +G
Sbjct: 1365 DG 1366


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/182 (57%), Positives = 136/182 (74%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD
Sbjct: 1   DYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D 
Sbjct: 61  IAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDT 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN +
Sbjct: 121 VDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 180

Query: 212 IS 213
            S
Sbjct: 181 AS 182


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 119/157 (75%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
            +VYD++VRLAQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ 
Sbjct: 61  IAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKET 120

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           VD+   Y+  +  P V P+K PNLL NG+SGIAVG  
Sbjct: 121 VDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWG 157


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 172/414 (41%), Gaps = 31/414 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  +S    + +  + ++++   +R+IP + DG KP  R++++A     
Sbjct: 645  QFKPGTYLDHSVSKISYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYACFRRN 703

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A +V  +    + HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 704  LKKDMKVVELAGLVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 761

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  + + +  + +  EP  +    P +L NG  
Sbjct: 762  GGSDCASARYIYTRLSPFARKIFHTADEPLLTYNE-DDGKKIEPETYMPVVPMVLINGAD 820

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++      L+    I              P           +V 
Sbjct: 821  GIGTGWSSSIPNYNPEDVVNNLKRLMKGEPIE-------------PMQPWFRGFTGEVVN 867

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A+++P  ++D
Sbjct: 868  M-----GGDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKD 920

Query: 301  IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +  D V  V+    +++   L           ++    N+      GR+ +   +D
Sbjct: 921  YKDYNTHDKVHFVIQLDEKNMKAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYATVD 980

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             ILKE+   R +   RR   ++  + + +E L         I +   +I  + K
Sbjct: 981  DILKEFFTVRLKYYERRKQHQLSELQKELEKLSNQARFVQMIIDGKLVISKKKK 1034


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/183 (57%), Positives = 137/183 (74%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SIE 215
           S E
Sbjct: 181 SXE 183


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 198/539 (36%), Gaps = 73/539 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  
Sbjct: 776  QFKPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRN 834

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       +    V  +    + HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 835  VKKDMKVVELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 892

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  +   +  + +  EP V+    P +L NG  
Sbjct: 893  GGSDCASARYIHTRLSPFARRIFHAADEPLLK-SNIDDGKVIEPEVYVPVVPMILINGAD 951

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N +++      L+D      E L+         TG            
Sbjct: 952  GIGTGWSTSIPNFNPEDVVANLRRLMDG-----ESLVPMKPWFRGFTG------------ 994

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 995  --EVTASGDRYKFSGIIKQT--GDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKD 1050

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L + +     +         V      R+ +    +
Sbjct: 1051 YKDYNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAE 1110

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             ILK + A R     +R    +  + + ++           I +   +I  + KPK    
Sbjct: 1111 DILKAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLIEE 1170

Query: 415  ---------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                               L+ +  D +L + L SL +    ++
Sbjct: 1171 LKEKGFKPIPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKL 1230

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACE--------IREVKEIFSKSTDLGRRRTT 498
              ++ +   E + +  L  S +  W +   E        + + +    K+   GRR +T
Sbjct: 1231 LRQIGDKELEIDALIKL--SKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTST 1287


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/181 (56%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VY++LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 198/539 (36%), Gaps = 73/539 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  
Sbjct: 776  QFKPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRN 834

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       +    V  +    + HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 835  VKKDMKVVELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 892

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  +   +  + +  EP V+    P +L NG  
Sbjct: 893  GGSDCASARYIHTRLSPFARRIFHAADEPLLK-SNIDDGKVIEPEVYVPVVPMILINGAD 951

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N +++      L+D      E L+         TG            
Sbjct: 952  GIGTGWSTSIPNFNPEDVVANLRRLMDG-----ESLVPMKPWFRGFTG------------ 994

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 995  --EVTASGDRYKFSGIIKQT--GDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKD 1050

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L + +     +         V      R+ +    +
Sbjct: 1051 YKDYNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAE 1110

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             ILK + A R     +R    +  + + ++           I +   +I  + KPK    
Sbjct: 1111 DILKAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLIEE 1170

Query: 415  ---------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                                               L+ +  D +L + L SL +    ++
Sbjct: 1171 LKEKGFKPIPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKL 1230

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACE--------IREVKEIFSKSTDLGRRRTT 498
              ++ +   E + +  L  S +  W +   E        + + +    K+   GRR +T
Sbjct: 1231 LRQIGDKELEIDALIKL--SKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTST 1287


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/177 (57%), Positives = 139/177 (78%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+    ++KKSARIVG+V+GK HPHGD  +Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQ F  RYPL+ GQGNFG++DGD AAA RYTEARMT++   +L+ +++D +DF D Y+ 
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
            + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+    L+L  NP+ISI +L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 93/173 (53%), Positives = 125/173 (72%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +   ++  YL YA+S I  RAIPD RDG KPV RRII++M E+G+     +KKSARI+G
Sbjct: 4   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           E +GK HPHGD S+Y++L R+AQ F  RY LI GQGNFG+IDGD+ AA RYTEAR+ ++A
Sbjct: 64  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 123

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           E +++ ++++ V F   ++    EPV FPS+ P LL NGTSGIAVGMAT++  
Sbjct: 124 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVP 176


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 209/528 (39%), Gaps = 36/528 (6%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T +++  K +     + +  + ++++   +R+IP + DG KP  R+I+    +  
Sbjct: 662  QFQPGTYLDQKEKLIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRN 720

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG  + 
Sbjct: 721  FIKEAKIAQFSGYVSE--HSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQ 778

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 779  GGKDHASARYIYTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTWYVPTIPMVLVNGSE 837

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I      L++       +++E       P        R +I +
Sbjct: 838  GIGTGWSSSIPNYNPRDIIANVRRLLNG------EMME-------PMDPWYRGFRGTIEK 884

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------IIAKRI 295
            +    +       +  +EEV      + ++E+P +       E +  +      I    I
Sbjct: 885  TDPTKQESVGYTVKGIIEEV--NETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFI 942

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
               ++  D++     +++  +N  +     +   F L+   +   +++   S G + +  
Sbjct: 943  KDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFD-SNGTIKKYE 1001

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              + IL+E+   R E   +R    +  ++  +  L+  +   L +     I+ N  +   
Sbjct: 1002 TPEQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVRGEIIVSNRKRADL 1061

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW--- 472
                   +     + +L++ + +L   +  ++ ++ D L    + +     + K  W   
Sbjct: 1062 FHELHQKVRATDYEYLLSMAIGTLTLEKVQELCADRDKLNKGVDDLKK--ATPKALWITD 1119

Query: 473  -NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             + +  E+ E  +  +++ +  ++  +        K + Q     ++ 
Sbjct: 1120 LDALERELDEQDKNDARAEETRKQLKSRVMSEAGMKVSRQAPKNPRKN 1167


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 104/181 (57%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 104/181 (57%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 105/181 (58%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 200/530 (37%), Gaps = 67/530 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++   +  +  
Sbjct: 774  PGTFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFKRNVKK 832

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 833  DMKVVELAGHVSGMTA--YQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGA 890

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  GI 
Sbjct: 891  DCASARYIYTRLSPFARRVFHQADEPLLTYNE-DDGEKIEPELYVPVVPLILINGADGIG 949

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N +E+      ++D  E            P F      V           
Sbjct: 950  TGWSSSIPNYNPEEVVANLKRMMDGEEPEPM-------QPWFRGFKGEV----------- 991

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
              +G  R +    ++EV      + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 992  TQQGPDRYKFSGLIKEVSDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 1049

Query: 304  ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             +    V  V+    + L   +            T    N+      GR+ +   +  IL
Sbjct: 1050 YNTHTKVHFVIQMDEKHLKAAVSEGLEEKFKLSRTIATSNLVAFDPEGRITKYATVSDIL 1109

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
            KE+ A R +   RR   ++  + + ++           I +   +I  + K         
Sbjct: 1110 KEFYAVRLKYYERRKQHQLSELQKELDKFTNQARFVQMIIDGKLVISKKKKPVLIAELKE 1169

Query: 413  ------PKPVMVSRFSLTE------------------NQVDAILNLRLRSLRKLEEYQIK 448
                  PK     +   TE                  N  D +L + + SL +    ++ 
Sbjct: 1170 KGFKPFPKVSEAVKAGETEQVVEEDESSEEANVEVASNAYDYLLGMAIWSLTQERVEKLL 1229

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
             ++     E +++   L+        +   I E +  F    +  R R  
Sbjct: 1230 RQIGEKETEIDELIK-LSKEDIWRRDLDDFINEWR--FQLEEEQRRERKV 1276


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 107/561 (19%), Positives = 218/561 (38%), Gaps = 67/561 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 800  PGTYLDHTDKMLTYDNFINKELILFSMADNL-RSIPSVIDGLKPGQRKVMYACFKRNLTN 858

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V +V    + HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 859  DMKVVELAGYVSQVSA--YHHGEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQGGS 916

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  +   +D+  +++ +  +    EPV +    P +L NG  GI 
Sbjct: 917  DAASARYIFTRLSPFARRVYSALDDPVLEY-NVDDGRSIEPVTYFPVVPMVLINGADGIG 975

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  EI       +   + S E+     + P F       E          
Sbjct: 976  TGWSTNIPNYHPVEIVNNLKRRMGRLDDSGEEKPFETMMPWFRGWKGTAEP--------- 1026

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +    + E   G   + +TE+P ++       K+ E+I A+++P  ++D ++
Sbjct: 1027 --AGPDRYKFNGIIRET--GDTEVEITELPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKE 1082

Query: 304  ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGIL 361
             +    V +++   ++ +   L+          +T    N+       ++ +   ++ IL
Sbjct: 1083 FNDHKTVHMIIQMDDKHMKAALVEGLAEKFKLNKTVATSNLVAFDHRGQIRKYEKVEDIL 1142

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------K 414
            +E+   R ++   R ++ +  ++     L         I E   I+  + KP       K
Sbjct: 1143 EEFYEQRFKMYTVRKAYWVNKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLVAELRK 1202

Query: 415  PVMVSRFSLTE-------------------------NQVDAILNLRLRSLRKLEEYQIKS 449
                    ++E                            D +L L + SL +    ++  
Sbjct: 1203 RGYEGFPKVSEAKKAGETDDVVENEEEVGIDEDAGARDFDYLLGLPIWSLTQERVDKLNK 1262

Query: 450  ELDNLLAEKEKIDSLLNSGKQQW------NQIACE--IREVKEIFSKSTDLGRRRTTFCE 501
            + D+   E + ++ L  S K  W        +  E  +++  EI SK+     RR +   
Sbjct: 1263 QKDDKKDEIDTLERL--SEKDLWCEDLDAFVLEWEDQLKQDAEI-SKAIRNTNRRRSNKI 1319

Query: 502  VSRADKATLQQAMIEKEPITV 522
             +        +   E E  TV
Sbjct: 1320 GAGGKPGGRGRPRNEDEEFTV 1340


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/183 (57%), Positives = 138/183 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 SIE 215
           S+E
Sbjct: 181 SLE 183


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 109/471 (23%), Positives = 194/471 (41%), Gaps = 57/471 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  IH+ ++     G  F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAAKG----GTGFQKVASI 57

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ SV ++L  +A  +    PL    G FG+       A RY + +++ 
Sbjct: 58  AGGVAMYGYHHGETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLSP 117

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + I    D          + E   P  +    P +L NG SGIA   AT+IP H+   
Sbjct: 118 LFKAIYMDEDLTL----PHEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPVS 173

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    ++ ++  + +++     +  P F                    +G       +  
Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPHF--------------------KGDIENGTMYGK 208

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E+ +G   +V+TEIP +  + + I  + +L        +   +D S ED R  +  K  
Sbjct: 209 YEL-QGKTKLVITEIPVKYDRVKYISILDKLEEKGY---IVSYKDLSKEDFRYEITLKRE 264

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  L  E I     +      N+NV+  G++      + +LK+++  R  V  +R   
Sbjct: 265 YAN-GLTREKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRIGVYQQRIDK 323

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------FSLTENQVDAI 431
           R+Q      E  + L  A   +D I  +I   D  K +  S        ++  EN  + +
Sbjct: 324 RIQ------ETKEALDKALAKVDFIDQMIAQPDALKGLSRSEAVKLVSTWAGCENHAEIL 377

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKID------SLLNSGKQQWNQIA 476
           + + +  L   E  +++ E + L  + +  +        LN  K+   ++ 
Sbjct: 378 VAMNIYHLTTDERQKLEDEANELRKQLKYWEETTPKTEYLNDLKELSKKLK 428


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/181 (58%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/209 (41%), Positives = 133/209 (63%), Gaps = 6/209 (2%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +++ +D+D  DF+  Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN++E+ EA
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 203 ALALIDNPEISIEKL----LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
               + +P  S E+L    +E I GPDFP G +IV  R+ I ++YR GRG   +RA   +
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTMRAVIDM 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKN 317
           EE  +G  C+VVTE+PY      L  KIA+L+ + RI  + DIRD+ SA   + ++    
Sbjct: 120 EEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLK 179

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           R   P ++M +++  + ++  F  NM  L
Sbjct: 180 RDAQPRVVMNNLYKHTALQDTFGCNMLAL 208


>gi|121511880|gb|ABM55391.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 99/258 (38%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+++          K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +   S    G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++    +  V   ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K D  I         E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVYADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 105/181 (58%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 104/181 (57%), Positives = 136/181 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D V
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEI 212
           DF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 213 S 213
           S
Sbjct: 181 S 181


>gi|329725076|gb|EGG61570.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU144]
          Length = 379

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 136/324 (41%), Gaps = 18/324 (5%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+L  L   +   +K E + L A  +++ ++L++ +     I  E+ E+K+ F       
Sbjct: 2   LQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVD---- 57

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDS 550
             R +  E   ++    ++ M+  E + + ++  G+I+   + S + S    +  K+GD 
Sbjct: 58  --RLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGDR 115

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF-- 606
           L      +T D +L+ +  G+   +P   L   R    G+ I  ++ ++ ++++V  +  
Sbjct: 116 LLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNE 175

Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDHVA-V 663
             + +    ++ +  G       S+       K    +KV  ++++  VV++  D +  V
Sbjct: 176 KDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITV 235

Query: 664 VGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
           +      L +S +++ +   R  GV+  + KD     V+   + +  + I    R   + 
Sbjct: 236 LTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYV-VMTEDVNDSDSIIMVTQRGAMKR 294

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746
            +  +    KR   G  + K   +
Sbjct: 295 IDFNVLQEAKRAQRGITLLKELKK 318


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/465 (22%), Positives = 192/465 (41%), Gaps = 45/465 (9%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  IH+  +     G  F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAMQG----GTGFQKVASI 57

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ SV ++L  +A  +    PL    G FG+       A RY + +++ 
Sbjct: 58  AGGVAMYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLSP 117

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + I    D   V      + E   P  +    P +L NG SGIA   AT+IP H+ + 
Sbjct: 118 IFKAIYMDGDLTPVH----EDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPKS 173

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    +A +++ + +                         +   Y   +G       +  
Sbjct: 174 VVNGCIAYLNDKDFT-------------------------LDLKYPYFKGEITDGTIYGT 208

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E+ +G   +V+TEIP +  + + I  + +L       ++   +D S ED R  +  K  
Sbjct: 209 YEL-QGKTKLVITEIPVKYDRVKYIAILDKLEEKG---VIVSYKDLSKEDFRYEVTLKRE 264

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  L  E I     +      N+NV+  G++      + +LK+++  R  V  +R + 
Sbjct: 265 YAN-GLTREKILKDFGLIENSNPNINVIFEGKLYSYERPETLLKDFVDIRMNVYQQRINK 323

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-SRFSLTENQVDAILNLRLR 437
           R+Q     ++     +     + E    +R   + + V   S +   EN  + ++ + + 
Sbjct: 324 RIQETKEALDKALAKVAFIAQMVESPDSLRGLSRSEAVKFVSTWIGCENHAEMLVAMNIY 383

Query: 438 SLRKLEEYQIKSELDNLLAEKEKID------SLLNSGKQQWNQIA 476
            L   E  +++ E + L  + +  +        LN  K+   ++ 
Sbjct: 384 HLTTDERKKLEDEAEELRKQLKYWEETTPKIEYLNDLKELSKKLK 428


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 103/541 (19%), Positives = 209/541 (38%), Gaps = 74/541 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                       V  +    + HGD S++ +++ LAQ F        +   GNFG+    G
Sbjct: 820  KDVKVLDLTGQVFSLTA--YHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGG 877

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A++ RY   R++  A  I    D+  + + +  + ++ EP V+    P +L NG  GI
Sbjct: 878  ADASSARYIHTRLSPFARKIFHPHDDPILKYLE-DDGKEIEPWVYVPVVPMILINGADGI 936

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N ++I +    +I   EI              P        +  +    
Sbjct: 937  GTGWSTSIPNYNPEDIVDNLKRMIRGEEIK-------------PMQPWFKGFKGEV---- 979

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIR 302
                G  + +    +++V      + VTE+P +      I K+ E+I A + P L++D +
Sbjct: 980  -TQLGPDKYKFSGLIKQVSDKE--LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYK 1036

Query: 303  DESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
            D +   DV +VL    +++   L  E +     +         V   + G++ +   ++ 
Sbjct: 1037 DYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEA 1096

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI------------------- 400
            IL+E+   R +   +R   ++  +   +E L         I                   
Sbjct: 1097 ILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVHMIIDGDLVVSKKKKSVLVKEL 1156

Query: 401  ----DEIIAIIRNEDKP----KPVMVSRFSLTENQ---------VDAILNLRLRSLRKLE 443
                 +      +  K     K +  S    TE Q          D +L + + SL +  
Sbjct: 1157 DSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLGMAIWSLTQER 1216

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              +++ ++     E +++  L      L    +  N+   ++ E           GRR +
Sbjct: 1217 VEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRRRRGQQKKGRRVS 1276

Query: 498  T 498
            T
Sbjct: 1277 T 1277


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 2/200 (1%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
           MG D  +  + + +  +  V L+  ++  YL YA+S I  RA+PD+RDG KPVHRR+I+ 
Sbjct: 362 MGEDVEARRSFIQQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYT 421

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M + G     AF K  R++G+V+G+ HPHGD +VYDSLVRL QP+  RYPL  GQGNFG+
Sbjct: 422 MYDGGYRPDKAFSKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGS 481

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              D AAA+RYTE +M+ +A  +++ +DED VDF+D Y+    EP V  ++FPNLL NG+
Sbjct: 482 PGNDGAAAHRYTETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGS 541

Query: 181 SGIAVGM--ATSIPSHNVQE 198
            GIAVGM   T I ++  Q 
Sbjct: 542 VGIAVGMIKRTRIDNYRTQH 561



 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 95/287 (33%), Gaps = 12/287 (4%)

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           +  +I E    F  + D   +  T       +        I      +  +     R+  
Sbjct: 504 MVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAVG--MIKRTRIDNYRTQH 561

Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQL 592
                +     +  D ++      T   +L  +  G+ Y      +  G     G+ +  
Sbjct: 562 RGGKGVKDAALRADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTYEVPEGGRDAKGQHLAN 621

Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L  ++ +        +++   L++ +  G       +E   N   G   +K+  E++
Sbjct: 622 LLALAPDESVTQILDLREFEADRFLVLATRDGLVKKTALTEYDTNRTGGIIAIKLRDEDE 681

Query: 650 MKLVVKV-TGDHVAVVGENRKLLIFSIDQ--IPEMSRGK-GVRLQSYKDGGISDVICFKI 705
           +   +   + D V ++ ++   + F+     +  M R   GVR  +++DG    +   +I
Sbjct: 682 LVSALIAESDDDVLLISKHGMSVRFTASDQALRPMGRSTSGVRGMNFRDGD-QLLQASRI 740

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            EG          Y +        +  RGG G  V K     G  + 
Sbjct: 741 TEGGYVFVVTEGGYAKRTAVDEYRVQNRGGFGIKVAKLDEARGDLVG 787



 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 14/194 (7%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLS 567
             E +   V+ +  G ++       D +      A+  ++ D L  AL A + D +LL+S
Sbjct: 639 EFEADRFLVLATRDGLVKKTALTEYDTNRTGGIIAIKLRDEDELVSALIAESDDDVLLIS 698

Query: 568 TDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
             G +    A +  + R  G +   +  ++      ++ A        + VV+  G A  
Sbjct: 699 KHGMSVRFTASD-QALRPMGRSTSGVRGMNFRDGDQLLQASRITEGGYVFVVTEGGYAKR 757

Query: 626 VEESEIIANTRKG--KTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681
               E     R G      K+     + +   +   GD V  V  + K++  ++ ++P  
Sbjct: 758 TAVDEYRVQNRGGFGIKVAKLDEARGDLVGGFIVDEGDEVLAVLASGKVVRSNVAEVPAK 817

Query: 682 SRGK-GVRLQSYKD 694
            R   GV    + +
Sbjct: 818 GRNTMGVVFARFPE 831


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
          Length = 1062

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 92/462 (19%), Positives = 194/462 (41%), Gaps = 43/462 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++I++  +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E     + HG+ S+  ++V LAQ +        +  +G FG+    G
Sbjct: 678  TDVKVAQFSGYVAE--HSAYHHGEASLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGG 735

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+SGI
Sbjct: 736  KDHASARYIFTKLNPQTRQVFVDTDDNLLKYLY-DDGDKIEPEYYVPVIPSILVNGSSGI 794

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS+N ++I +    L     I+ E L+E         G I   S +      
Sbjct: 795  GTGWSTNIPSYNPKDIVDNVKRL-----IAGEDLVEMKPWYRGFKGKIEETSPD-----V 844

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             + +G +    +            IVV+E+P         E +  L+  K I    +   
Sbjct: 845  YVTKGLYMPNGK-----------TIVVSELPIGKWTQDYKEHLDGLLEKKIISDFREKHT 893

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
            ++      VLF  +   +P++  + + + + + +    NM+     G++ +      I++
Sbjct: 894  DTD-----VLFEIDFIGNPNV--DILKLETTIRST---NMHAFDPYGKIKKYDTPLDIIR 943

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVS 419
            EW   R+++  +R ++ ++ +  R  I +        +++   II      D    +   
Sbjct: 944  EWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKYRFITMVNDGEIIINKRNESDISAELEKL 1003

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            +F   +++ D +LN+R+ SL      ++K E   L  E + +
Sbjct: 1004 KFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELDDL 1045


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 101/177 (57%), Positives = 133/177 (75%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KS
Sbjct: 2   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 61

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+
Sbjct: 62  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVGMAT+IP
Sbjct: 122 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 103/541 (19%), Positives = 209/541 (38%), Gaps = 74/541 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +T ++ +V  +S    +    + ++++    R+IP + DG KP  R++++ + +  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                       V  +    + HGD S++ +++ LAQ F        +   GNFG+    G
Sbjct: 820  KDVKVLDLTGQVFSLTA--YHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGG 877

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A++ RY   R++  A  I    D+  + + +  + ++ EP V+    P +L NG  GI
Sbjct: 878  ADASSARYIHTRLSPFARKIFHPHDDPILKYLE-DDGKEIEPWVYVPVVPMILINGADGI 936

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N ++I +    +I   EI              P        +  +    
Sbjct: 937  GTGWSTSIPNYNPEDIVDNLKRMIRGEEIK-------------PMQPWFKGFKGEV---- 979

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIR 302
                G  + +    +++V      + VTE+P +      I K+ E+I A + P L++D +
Sbjct: 980  -TQLGPDKYKFSGLIKQVSDKE--LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYK 1036

Query: 303  DESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
            D +   DV +VL    +++   L  E +     +         V   + G++ +   ++ 
Sbjct: 1037 DYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEA 1096

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI------------------- 400
            IL+E+   R +   +R   ++  +   +E L         I                   
Sbjct: 1097 ILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDGDLVVSKKKKSVLVKEL 1156

Query: 401  ----DEIIAIIRNEDKP----KPVMVSRFSLTENQ---------VDAILNLRLRSLRKLE 443
                 +      +  K     K +  S    TE Q          D +L + + SL +  
Sbjct: 1157 DSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQDLAHAFDYLLGMAIWSLTQER 1216

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              +++ ++     E +++  L      L    +  N+   ++ E           GRR +
Sbjct: 1217 VEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRRRRGQQKKGRRVS 1276

Query: 498  T 498
            T
Sbjct: 1277 T 1277


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 98/540 (18%), Positives = 197/540 (36%), Gaps = 74/540 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++AM +  
Sbjct: 693  QFKPGTYLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRN 751

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       +    V  +    + HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 752  VKKDMKVVELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 809

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    DE  +   +  + +  EP V+    P +L NG  
Sbjct: 810  GGSDCASARYIHTRLSPFARRIFHAADEPLLK-SNIDDGKVIEPEVYVPVVPMILINGAD 868

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N ++I      L+D      E L+         TG            
Sbjct: 869  GIGTGWSTSIPNFNPEDIVANLRRLMDG-----ESLVPMKPWFRGFTG------------ 911

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++   G   + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 912  --EVTASGDRYKFSGIIKQT--GDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKD 967

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L + +     +         V      R+ +    +
Sbjct: 968  YKDYNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAE 1027

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             ILK + A R     +R    +  + + ++           I +   +I  + K K    
Sbjct: 1028 DILKAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKAKLIEE 1087

Query: 415  ----------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
                                                L+ +  D +L + L SL +    +
Sbjct: 1088 LKEKGFKPIPKAVDAAKEGENEPAVEEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEK 1147

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE--------IREVKEIFSKSTDLGRRRTT 498
            +  ++ +   E + +  L  S +  W +   E        + + +    K+   GRR +T
Sbjct: 1148 LLRQIGDKELEIDALIKL--SKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTST 1205


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 122/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/188 (49%), Positives = 139/188 (73%), Gaps = 1/188 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AEL+L  + +  VD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +   ++    EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ L++ P+ +
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKTT 180

Query: 214 IEKLLEYI 221
           +++LL+ +
Sbjct: 181 LDELLDIV 188


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 199/533 (37%), Gaps = 69/533 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R+++H      
Sbjct: 773  QFKPGTFLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLHTCFRRN 831

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 832  LKKDMKVVELAGHVSGMTA--YHHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + +  EP VF    P +L NG  
Sbjct: 890  GGGDCASARYIYTRLSPFARKVFHSADEPLLTYNE-DDGKKIEPEVFMPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +++      L+                P  P           +V 
Sbjct: 949  GIGTGWSSSIPNYNPEDVVNNLKRLMAGE-------------PTEPMQPWFRGFTGEVV- 994

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + E   G   + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 995  ----AVGGDRFKFSGIIREC--GEKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1048

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             RD +       +   +       L E +     +         V      R+ +   +D
Sbjct: 1049 YRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+   R +   RR  F++  + R +E L         I +   +I  + KP     
Sbjct: 1109 DILKEFFVVRLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKKPVLIAE 1168

Query: 414  -------------------------KPVMVSRFSLTENQ-----VDAILNLRLRSLRKLE 443
                                     +          + Q      D +L++ + SL +  
Sbjct: 1169 LKDKGFKPISKVAEAPKMGEDEPVVEEEGEEESDDNDTQKLSSSFDYLLSMPMWSLTQER 1228

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRR 495
              +++ ++ +   E + +  L  S +  W +   E I+E +          R+
Sbjct: 1229 VEKLRRQIGDKETEVDVLIKL--SKEDIWTRDLDEFIQEWRFQLEDEDRRARK 1279


>gi|121511878|gb|ABM55390.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 98/258 (37%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+++          K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +   S    G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++    +  V   ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K      V       E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/161 (59%), Positives = 128/161 (79%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           +  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 124/162 (76%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|121511882|gb|ABM55392.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 101/261 (38%), Gaps = 23/261 (8%)

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+++          K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +   S    G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++    +  V   ++ +     + + F ++
Sbjct: 121 RNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731
           +  +  R  +GVR   +K        +DVI     E    +  + +   +        L 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDFVVDADVI---DSEEQEILTVSEKGIGKRTTIEEYRLT 237

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            R G G +  K  P++G  + 
Sbjct: 238 NRAGSGVIAMKLSPKTGNIVG 258


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/509 (19%), Positives = 193/509 (37%), Gaps = 64/509 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ + + +S    +    + ++++    R+IP + DG KP  R+++    +  L 
Sbjct: 767  EPGTYLDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLI 825

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V +     + HG+QS+  +++ LAQ F        +   GNFG+    G
Sbjct: 826  HDQKVVELAGYVSK--EAAYHHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLSGG 883

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY   R++ +A  I   +DE  ++F+   + +  EP V+    P +L NG  GI
Sbjct: 884  SDAASARYIHTRLSPLARKIFHPLDEPNLEFQF-DDGKLIEPKVYAPIIPMVLVNGADGI 942

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG-PDFPTGGIIVESRESIVES 242
              G +TSIP+++  +I E     +        +   +    P F       E        
Sbjct: 943  GTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGEEKPFEPMTPWFRGWKGTPEP------- 995

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDI 301
                 G  R +    VE   +    + VTE+P ++       K+ E+I   + P  ++D 
Sbjct: 996  ----DGPNRFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKSPSWIKDY 1051

Query: 302  RDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDG 359
            ++ +    V  ++  + + +   L    I      +T    N+       ++ +      
Sbjct: 1052 KEYNDHQTVHFIIALEEKHMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIHKYENPQE 1111

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII------------ 407
            I++E+  +R  +   R    ++         + L   Y  I EII               
Sbjct: 1112 IMEEYYHYRLNLYGERKKHWLKVYHAD---YRKLQNQYRFISEIIENKLVVSKKKKSVLV 1168

Query: 408  -----------------RNEDKPKPVMVSRFSLTENQV-------DAILNLRLRSLRKLE 443
                             RN   P   + +  +  E          D +L++ + SL    
Sbjct: 1169 QELRERKYEAFPPKSDGRNVKSPDEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFER 1228

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
              ++K ++    AE +++D+L  S K  W
Sbjct: 1229 LDKLKQQIAAKKAEHDELDAL--SEKDLW 1255


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/599 (17%), Positives = 226/599 (37%), Gaps = 75/599 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++      S    + +  + ++++    R+IP + DG KP  R++I+   +  L  
Sbjct: 767  PGTYLDATAARKSYTDFVHKELILFSMADNM-RSIPSMVDGLKPGQRKVIYGAFKRNLVN 825

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  + EV    + HG+ S+  ++V LAQ +        +   GNFG+    G 
Sbjct: 826  DQKVAELAGYISEVAA--YHHGEVSLQQTIVGLAQTYVGSNNVNCLEPSGNFGSRLSGGS 883

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  I   +DE  ++++   +    EP V+    P +L NG  GI 
Sbjct: 884  DAASARYIHTRLSPFARRIFSKLDEPNLEYQF-DDGNMIEPKVYVPILPMVLVNGADGIG 942

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+++  EI +     +   +    +         F          + ++ES  
Sbjct: 943  TGWSTSIPNYHPIEIVDNLKRRMGRLDPEDSE------EKAFKPMTPWFRGWKGVLES-- 994

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +    +++  +    I VTE+P ++       K+ +++ A++ P  ++D R+
Sbjct: 995  --DGPNRYKFNGIIQQDEQNPNEIHVTELPIRMWTDDFKSKLEDILRAEKTPSFIKDYRE 1052

Query: 304  ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGIL 361
             +    V  ++  +++ +   L    +      ++    N+   +   ++ +    + I+
Sbjct: 1053 FNDHQTVHFIIDMEDKHMKAALDEGLLEKFKLSKSMTTTNLVAFNTRGQIHKYENPEEIM 1112

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
            +E+  +R  +   R    +         LK      L I E   I+  + K         
Sbjct: 1113 EEFYHYRFNMYTERKKHWLGVYHADYRKLKNQYRFILEIIENKLIVNKKKKDVLVQELRD 1172

Query: 413  -------PKPVMVSRFSLTE---------------NQVDAILNLRLRSLRKLEEYQIKSE 450
                   PK    S+ +  E                  D +L++ + SL      ++K++
Sbjct: 1173 RKYEAFPPKDDKKSKSTDEELGKDDAEDEDTSNGARDYDYLLSMPIWSLTNERLEKLKNQ 1232

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQIAC----------EIREVKEIFSKSTDLGRRRTTFC 500
            +    AE +++D+L  S K  W  I            +++   EI +    +GRR +   
Sbjct: 1233 IAAKKAEHDELDAL--SEKDLW--IKDLDEFVDEWHTQLKLDAEITADIRRMGRRTSRKI 1288

Query: 501  ---------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
                     +          +A   K       +++ +    ++ +     +   + D 
Sbjct: 1289 GAGRGRRPKDDDEYAPEKKTKAKAPKVEKVETKTHQRFTEKFQAAANPKPKIDLSDDDF 1347


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/522 (18%), Positives = 196/522 (37%), Gaps = 68/522 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++   +R+IP + DG KP  R+++H      
Sbjct: 649  QFKPGTFLDHSGAKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLHTCFRRN 707

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 708  LKKDMKVVELAGHVSGMTA--YHHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 765

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    DE  + + +  + +  EP VF    P +L NG  
Sbjct: 766  GGGDCASARYIYTRLSPFARKVFHSADEPLLTYNE-DDGKKIEPEVFMPVVPMILINGAD 824

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N +E+      L+                P  P           +V 
Sbjct: 825  GIGTGWSSSIPNYNPEEVVNNLKRLMAGE-------------PTEPMQPWFRGFTGEVV- 870

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + E   G   + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 871  ----AVGGDRFKFSGIIREC--GEKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 924

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             RD +       +   +       L E +     +         V      R+ +   +D
Sbjct: 925  YRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVD 984

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             ILKE+   R +   RR  F++  + R +E L         I +   +I  + +P     
Sbjct: 985  DILKEFFVVRLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKRPDLIAE 1044

Query: 414  -------------------------KPVMVSRFSLTENQ-----VDAILNLRLRSLRKLE 443
                                     +          + Q      D +L++ + SL +  
Sbjct: 1045 LKDKGFKPISKVAEAPKMGEDEPVVEEEGEEESDDNDTQKLSSSFDYLLSMPMWSLTQER 1104

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
              +++ ++ +   E + +  L  S +  W +   E+ ++ + 
Sbjct: 1105 VEKLRRQIGDKETEVDVLIKL--SKEDIWTRDLDELIKLSKE 1144


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 166/412 (40%), Gaps = 31/412 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  ++    + +  + ++++   +R+IP + DG KP  R+++H      L  
Sbjct: 646  PGTYLDHSVAKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLHTCFRRNLKK 704

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 705  DMKVVELAGHVSGMTA--YHHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGG 762

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  I    DE  + + +  + +  EP VF    P +L NG  GI 
Sbjct: 763  DCASARYIYTRLSPFARKIFNTADEPLLTYNE-DDGKKIEPEVFMPVVPMILINGADGIG 821

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N +++      L+                P  P           +V    
Sbjct: 822  TGWSSSIPNYNPEDVVNNLKRLMAGQ-------------PTEPMQPWFRGFTGEVV---- 864

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               GG R +    + E   G   + +TE+P +       +K+ E+I A+++P  ++D RD
Sbjct: 865  -AVGGDRYKFSGIIREC--GDKEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYRD 921

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGIL 361
             +       +   +       L E +     +         V      R+ +   +D IL
Sbjct: 922  YNTHTKVHFIIQLDEKHMKVALTEGLEEKFKLTKSIATTNLVAFDPEGRITKYATVDDIL 981

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            KE+   R +   RR  F++  + R +E L         I +   +I  + KP
Sbjct: 982  KEFYVVRLKYYERRKQFQLNDLQRELEKLSNQARFVQMIIDGKLVISKKKKP 1033


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EP+V PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/533 (17%), Positives = 193/533 (36%), Gaps = 87/533 (16%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ + + ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 768  QFKPGTYLDHSTEQITYSDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTMFKRN 826

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 827  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 884

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +T + +  EP  +    P +L NG  
Sbjct: 885  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGAD 943

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++      L+       E+L+          G            
Sbjct: 944  GIGTGWSTSIPNYNPEDVVANLKRLMAG-----EELVPMKPWFRGFKG------------ 986

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +++ E+I A ++P  ++D
Sbjct: 987  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDRLEEIIKADKVPSFIKD 1042

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L E +     +      +  V      R+ +    +
Sbjct: 1043 YKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPE 1102

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------- 409
             IL+ + A R ++  RR    +  +  +++ L         I +   +I           
Sbjct: 1103 DILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSNQARFVQMIIDGKLVISKKKKTILIQE 1162

Query: 410  ------------EDKPKPVMVSRFS--------------LTENQVDAILNLRLRSLR--- 440
                         D  K   V                  L+ +  D +L++ L SL    
Sbjct: 1163 LKDKAFKPFPKVADTAKSDEVDDEEGEEDEEEEGNSDAVLSSDAYDYLLSMPLWSLTQER 1222

Query: 441  --KLEEYQIKSELD---------------NLLAEKEKIDSLLNSGKQQWNQIA 476
              KL       E++               +L     +    L   + +  +IA
Sbjct: 1223 VEKLRRQIGDKEMEVDALIKLSKEDIWRKDLDDFIAEWRFQLEDEENRRKKIA 1275


>gi|69250182|ref|ZP_00605118.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
 gi|68193990|gb|EAN08550.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
          Length = 251

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           LK H +D   L++K GDS K A+   +   ++ + + G++Y +    L S RG GE +  
Sbjct: 12  LKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 71

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
            + L     +    +     KLL+ S  G  F+   ++++A  R GK  + +     +  
Sbjct: 72  KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMP 131

Query: 653 VVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICF 703
            V +    D +  + +  ++L+F +  +P++S+GKG ++ +         + G++ +   
Sbjct: 132 PVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVL 191

Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
                LT I    R       +L    G+RG  G+ + +G  R  + 
Sbjct: 192 PPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGT-LMRGLQRIDRV 236


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/528 (17%), Positives = 198/528 (37%), Gaps = 69/528 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++      L  
Sbjct: 776  PGTFLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKK 834

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V       + HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 835  DMKVVELAGHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGA 892

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    D+  + + +  +    EP V+    P +L NG  GI 
Sbjct: 893  DCASARYIYTRLSPFARRVFHNHDDPLLTYNE-DDGAKIEPEVYVPVVPMILINGADGIG 951

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I E    ++D      E L          TG +             
Sbjct: 952  TGWSSSIPNYNPEDIVENLKRMMDG-----EPLKPMQPWFRGFTGEV------------- 993

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 994  TAVGQDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 1051

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGIL 361
             +       +   +       + E +     +         V      R+ +   ++ I+
Sbjct: 1052 YNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPEGRITKYASVEDIM 1111

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413
            KE+ A R +   RR  +++  + + ++ L         I +   +I  + K         
Sbjct: 1112 KEFYAVRLKYYERRKQYQLNEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKE 1171

Query: 414  ---------KPVMVSRFSLT----------------ENQVDAILNLRLRSLRKLEEYQIK 448
                     K  + +  +                   N  D +L + + SL +    +++
Sbjct: 1172 KDFKPFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLR 1231

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             ++ +   E + +  L  S +  W     ++ +    +    D   RR
Sbjct: 1232 RQIGDKELEIDTLIKL--SKEDIW---KRDLEDFINEWRFQNDEEARR 1274


>gi|323255023|gb|EGA38813.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 311

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 10/221 (4%)

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598
           SA   KE D +   L A+T D IL  S+ G+ Y +    L        G  I  L+ L  
Sbjct: 1   SAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEA 60

Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655
           N+ I        Y+    + + ++ G       +E       G   + ++  +++  V  
Sbjct: 61  NERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL 120

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWI 712
            +G D V +     K++ F  D +  M R   GVR       G   V+   I  G    +
Sbjct: 121 TSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKL--AGDDKVVSLIIPRGEGAIL 178

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                 Y +           R   G +  K   R+G  + +
Sbjct: 179 TVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGA 219



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 59  EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 118

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 119 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 177

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 178 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 237

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 238 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 287


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 195/507 (38%), Gaps = 60/507 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 776  PGTFLDHSTKEITYTDFVSKELILFSMADNL-RSIPSVIDGLKPGQRKVLYACFKRNLIK 834

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  +++ LAQ F       ++   GNFG+    G 
Sbjct: 835  DKKVVELAGYVSEHTA--YHHGEASLQQTIIGLAQNFVGSNNINILEPSGNFGSRLAGGS 892

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R+   A+ I   +DE  +  +   + +  EP V+    P +L NG  GI 
Sbjct: 893  DAASPRYTFTRLAPFAKKIFSPLDEACLKHQY-EDGKRIEPEVYSPILPMVLVNGADGIG 951

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  +I +     +   +    +         F T        +   E+  
Sbjct: 952  TGWSTTIPNYHPADIVKNLKRRMGRLDEDGAE------EKPFETMTPWFRGWKGSPEA-- 1003

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +      +  +    I++TE+P ++       K+ ++I     P  ++D ++
Sbjct: 1004 --AGPDRYKFNGIASQNDQNPNEIIITELPIRMWTDDFKAKLEKVISGNDGPTWIKDYKE 1061

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESI---FMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             +           +    P +L E +   F L+       L     + G++ +   ++ I
Sbjct: 1062 FNDHKTVHFEIMVDEKHLPKILEEGLLERFKLTKQVATSNLVAFD-TRGQIRKYEKVEDI 1120

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
            L+E+  HR ++   R  + +Q  D  +E LK        I +   I+  + K        
Sbjct: 1121 LEEYYVHRLQMYHDRKQYWLQVYDNDLEKLKNQYRFIKEIIDGELIVGRKKKAVLVSELR 1180

Query: 414  --------------KPVMVSRFSLTE--------------NQVDAILNLRLRSLRKLEEY 445
                          K                         +  D +L++ + SL +    
Sbjct: 1181 DRKYKAFPPGGQKQKTADDEPDESDNENDDDDDKATAAGAHDYDYLLSMPIWSLTQERLD 1240

Query: 446  QIKSELDNLLAEKEKIDSLLNSGKQQW 472
            ++K  ++    + E + +   S K  W
Sbjct: 1241 KLKDAINKKKDDIEGLSA--KSEKDLW 1265


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 173/432 (40%), Gaps = 33/432 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   ++ 
Sbjct: 773  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTCFKLN 831

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + +  V  +    + HGD S+  +++ LAQ F        +   GNFG+   
Sbjct: 832  VKKDMKVAELSGYVLGLTA--YQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQ 889

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY   R++  A  I    D   + + +  + +  EP  +    P +L NG  
Sbjct: 890  GGSDAASPRYIYTRLSPFARRIFHEADGPLLTY-NVDDGQVIEPETYFPVVPMILINGAD 948

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +EI      L+             +  P  P           +V 
Sbjct: 949  GIGTGWSTSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVS 995

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +      ++G     I +TE+P +       +++ E+I A++IP  ++D
Sbjct: 996  M-----GGERYKFSGRFSQIGDNE--IEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKD 1048

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +    V  V+    +     +       L   +T    N+       R+ +    +
Sbjct: 1049 YKDYNTHTKVHFVIQLDEKHAKKTIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPE 1108

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL+E+ + R ++  +R   ++  + + +E L         I +   +I    KPK  +V
Sbjct: 1109 HILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVI--SKKPKAQLV 1166

Query: 419  SRFSLTENQVDA 430
                    +  A
Sbjct: 1167 QELKEKGFKAIA 1178


>gi|121511874|gb|ABM55388.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
 gi|121511876|gb|ABM55389.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 98/258 (37%), Gaps = 17/258 (6%)

Query: 512 QAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563
           + +I  EP+ V I++ G+++          K       A+   + D ++    ++T D +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 564 LLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618
           + ++  G+ Y L    +   S    G+A+  LI+L  ++ I+       +D +  L+  +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKSLVFFT 120

Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRKLLIFSID 676
             G       +E       G   + +   +++    +  V   ++ +     + + F ++
Sbjct: 121 RNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELE 180

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVIC-FKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           +  +  R  +GVR   +K      V       E    +  + +   +        L  R 
Sbjct: 181 KTRDQGRSTRGVRGIKFKIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 735 GVGSLVPKGFPRSGKFLS 752
           G G +  K  P++G  + 
Sbjct: 241 GSGVIAMKLSPKTGNIVG 258


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 123/162 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 203/532 (38%), Gaps = 70/532 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 665  QFKPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 723

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 724  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 781

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 782  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNE-DDGEKIEPEIYVPVVPMILVNGAD 840

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D  E            P F      V        
Sbjct: 841  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPM-------QPWFRGFTGEV-------- 885

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D
Sbjct: 886  ---TDVGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 940

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    +++   L           +T    N+      GR+ +   +D
Sbjct: 941  YKDYNTHTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVD 1000

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             ILKE+  +R +   +R  +++  + + ++ L         I +   ++  + K      
Sbjct: 1001 DILKEFYTYRLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQE 1060

Query: 413  ---------PKPVMVSRFSLTENQ-------------------VDAILNLRLRSLRKLEE 444
                     PK     +    E                      D +L + + SL +   
Sbjct: 1061 LKDKGYKAFPKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERV 1120

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             +++ ++     E + +  +  S +  W     ++ +    +    +   RR
Sbjct: 1121 EKLRRQIGEKEVEVDAL--IKMSKEDIW---KRDLDDFIAEWRFQLEDEHRR 1167


>gi|94471628|gb|ABF21080.1| DNA gyrase subunit A [Acholeplasma multilocale]
          Length = 345

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 123/333 (36%), Gaps = 26/333 (7%)

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           RL+ L  LE  +I  E++ + +  + +  L++  ++Q   +  ++ ++   +        
Sbjct: 1   RLQRLVGLEREKIAEEMNQIQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGD-----D 55

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------E 547
           RRT     S        + +I      +++S  G+IR +      +     +        
Sbjct: 56  RRTETINESVM--NIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGISVNSSN 113

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID-LNHNQDIVT 604
            D + IA      D +L  +  GK +   A N+   S    G  I   ++ L     I  
Sbjct: 114 DDPISIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITA 173

Query: 605 AFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
                +       L  V+  G     + S   +  + GK  + +  ++++  V+  TG+ 
Sbjct: 174 ILPMRNEKEKFKYLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGED 233

Query: 661 -VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGR 717
            V +  ++ K++  + D +  +SR   GV+     +   +   +     E +T I S G 
Sbjct: 234 TVFIANKSGKVIRINEDIVRPLSRTATGVKGIKLDEDDIVVGAVTSYGIEAITTISSKGN 293

Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              +        +  R G G  V     ++G F
Sbjct: 294 F--KKTALDEYRISGRNGKGIKVMNLNEKTGDF 324


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 199/534 (37%), Gaps = 68/534 (12%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            G        T ++ +V  ++    + +  + ++++    R+IP + DG KP  R++++  
Sbjct: 703  GNVRQFRPGTFLDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTC 761

Query: 62   SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
                L       + A  V       + HG+ S+  ++V LAQ F        +   GNFG
Sbjct: 762  FRRNLKKDMKVVELAGHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFG 819

Query: 120  NI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            +    G   A+ RY   R+   A  +    D+  + + +  +    E  V+    P +L 
Sbjct: 820  SRLQGGADCASARYIYTRLWPFARRVFHNHDDPLLTYNE-DDGAKIEQEVYVPVVPMILI 878

Query: 178  NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
            NG  GI  G ++S P++N ++I E    ++D      E L          TG +      
Sbjct: 879  NGADGIGTGWSSSTPNYNPEDIVENLKRMMDG-----EPLKPMQPWFRGFTGEV------ 927

Query: 238  SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP- 296
                      G  R +    ++E   G   + +TE+P +       +K+ ++I A++ P 
Sbjct: 928  -------TAVGQDRFKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPS 978

Query: 297  LLEDIRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++D +D +    V  V+    + +   +           +T    N+      R+ +  
Sbjct: 979  FIKDYKDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYA 1038

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-- 413
             ++ I+KE+ A R +   RR  +++  + + ++ L         I +   +I  + K   
Sbjct: 1039 SVEDIMKEFYAVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVL 1098

Query: 414  ---------------KPVMVSRFSLT----------------ENQVDAILNLRLRSLRKL 442
                           K  + +  +                   N  D +L + + SL + 
Sbjct: 1099 VAELKEKDFKPFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQE 1158

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
               +++ ++ +   E + +  L  S +  W     ++ +    +    D   RR
Sbjct: 1159 RVEKLRRQIGDKELEIDTLIKL--SKEDIW---KRDLEDFINEWRFQNDEEARR 1207


>gi|313633447|gb|EFS00274.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 404

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 134/344 (38%), Gaps = 22/344 (6%)

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +E Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K
Sbjct: 1   SEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIK 60

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-- 541
           + +         R T  +    +     + ++  E + V ++  G+++     S   S  
Sbjct: 61  KKYKTP------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG 114

Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLN 597
             L  KE D        ++ + +LL ++ G     P   L   R    G+ +  L  DL+
Sbjct: 115 KELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLS 174

Query: 598 HNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLV 653
             ++I +      +    + L V+  G       +        K    +K+  ++++  V
Sbjct: 175 AGEEIRSVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELLSV 234

Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLT 710
             + G + + +  +N   L + I +IPE   R  GV+  + K D  +   +     +   
Sbjct: 235 HLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQDDTVIGGVVLTQSDNRH 294

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
            + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 295 ILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 337


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 91/531 (17%), Positives = 203/531 (38%), Gaps = 67/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 771  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 947  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 990  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1045

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 1046 YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K      
Sbjct: 1106 DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQE 1165

Query: 413  ---------PKPVMVSRFS-------------------LTENQVDAILNLRLRSLRKLEE 444
                     PK V                          + +  D +L++ L SL +   
Sbjct: 1166 LQEKGFKPFPKVVGTPEPGEAGDVEEEEDEEEETTTAAASSDAYDYLLSMPLWSLTQERV 1225

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++ +   E + +   L+        +   I E +       +  ++
Sbjct: 1226 DKLRRQIGDKEMEVDALIK-LSKEDLWRKDLDEFISEWRFQLEDEENRRKK 1275


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 92/162 (56%), Positives = 124/162 (76%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL +   ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 127/553 (22%), Positives = 230/553 (41%), Gaps = 59/553 (10%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           ++   ++ ++ YA   I++RAIPDL DG KPV RRI+H +  +         K A +VG+
Sbjct: 4   IKNLFDKNFIEYASYVIRDRAIPDLEDGLKPVQRRIMHTLFNID---DGRMHKVASVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA 140
              K HPHGD S+  +LV LA     +   I  QGNFGN   GD+A+A RY E  +  +A
Sbjct: 61  -CMKFHPHGDASIGAALVVLA----NKEIFIQRQGNFGNLYTGDTASASRYIECCVHPLA 115

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           +  L   + +  ++  +Y+    EPV F +K P +L  G  GIAVGM+T I  +N++E+ 
Sbjct: 116 KKFL--YNPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEVL 173

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A +  +              I PD PTGG++       V +Y  G G    RA++ + +
Sbjct: 174 DAEIKALRGEPFE--------IYPDSPTGGLMD------VSNYNDGNGKIITRAKFDLSD 219

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
             +    IV+TE+P +     L++ I     A +I  +  + D + +   I +    R +
Sbjct: 220 EKK----IVITELPLETTSKDLLDSIDAAYKAGKIK-ISSVEDFTTDHCNIEI-KLPRGV 273

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
               + ++++  +  E      M V+        M    I+K +      ++     F  
Sbjct: 274 YSKDVEKALYAYTSCEKSIACQMLVIKDNMPVA-MTATEIIKYYAKKLTGIIKDELEFER 332

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------FSLTENQV 428
            ++   +      L      + I   I      + V  +               +T+  V
Sbjct: 333 GSLTEELHQRT--LERIFIEERIYKSIEQMKTAESVNKAVKDGFVPFKDELIRDVTDEDV 390

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK----IDSLLNSGKQQWNQIACEIREV-- 482
           + +L + +R +   +  + + ++  +    ++    +  L +   +  + I  E+++   
Sbjct: 391 EKLLKIPIRRISLFDINKNRDQVKAINERLKEIARRLKHLTDCAVEYLDGILDELKKFSA 450

Query: 483 ----KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE---KEPITVVISNRGWIRSLKS 535
               ++  + S  L  R+T     S  D   + Q        E   +  S  G    LK 
Sbjct: 451 LDPKQDHTAISPALLERQTKITSFSAVDVKQIVQRDTPLRYDEKGYLGTSVNGGREILKV 510

Query: 536 HSVDLSALHFKEG 548
              D   +  K G
Sbjct: 511 TPFDRILIVRKSG 523


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 92/531 (17%), Positives = 203/531 (38%), Gaps = 67/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 771  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  VRRDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 947  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 990  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1045

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  V+  + + +   L          ++     NM       R+ +    +
Sbjct: 1046 YKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K      
Sbjct: 1106 DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQE 1165

Query: 413  ---------PKPVMVSRFS-------------------LTENQVDAILNLRLRSLRKLEE 444
                     PK V                         ++ +  D +L++ L SL +   
Sbjct: 1166 LQEKGFKPFPKVVGTPEPGEAGDIEEEEDEEEETASAAVSSDAYDYLLSMPLWSLTQERV 1225

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++ +   E + +   L         +   I E +          ++
Sbjct: 1226 DKLRRQIGDKEMEVDTLIK-LTKEDLWRKDLDEFISEWRFQLEDEETRRKK 1275


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 126/325 (38%), Gaps = 25/325 (7%)

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            +I +E   + A  +++  +L    + ++ +  E+ E+KE ++       +R T  E  R
Sbjct: 1   EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYAD------KRRTKIEEER 54

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALH 556
            +   L + +I+ E I +  +N+G+++          +     +SAL+  E D  +    
Sbjct: 55  ME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITS 112

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDST 611
           A T D I++ +  GK Y + A  +   S +  G  +  +I+L+  + +    V   +   
Sbjct: 113 ASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPE 172

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENR 668
            +++ ++  G        E       G   +K   ++ +  V  +     + + +   + 
Sbjct: 173 KEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDG 232

Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
               F  D I    R  +GV+  + + G +              +      Y +  +   
Sbjct: 233 YCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDE 292

Query: 728 GWLGKRGGVGSLVPKGFPRSGKFLS 752
                RGG G +  K   ++GK +S
Sbjct: 293 YPQYNRGGKGVINLKVNEKNGKVVS 317



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 117/368 (31%), Gaps = 27/368 (7%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              I       R  +      + +   +      K        I+E    I  ED  K  
Sbjct: 7   FKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPEDLIKDE 66

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLAEKEKIDSLL--NSGK 469
            +      +  V  I   + ++ R+  +       I+ +    +     +D+++      
Sbjct: 67  EIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRG 126

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNR 527
           + +N  A EI ++          GR  +    +S  +K      + E   E   V I+  
Sbjct: 127 KVYNIRAYEIPDLSRQ-----SRGRLLSNIINLSEGEKVRDTIVIKEFLPEKEVVFITKN 181

Query: 528 GWIRSLKSHSV------DLSALHFKEGDSLKI--ALHAHTTDRILLLSTDGKAYTLPAGN 579
           G I+              L A+  KE D +     +     + IL+ + DG         
Sbjct: 182 GLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDT 241

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           + +     + ++ +     +  +    + +    +L ++  G        E     R GK
Sbjct: 242 IRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDILTITENGYGKRTSLDEYPQYNRGGK 301

Query: 640 TFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694
             + +   EK   VV V      + +  +  N  ++  SI++I  + R   GVR+    D
Sbjct: 302 GVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVAD 361

Query: 695 GGISDVIC 702
                 I 
Sbjct: 362 DEKVAAIT 369



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 79/220 (35%), Gaps = 25/220 (11%)

Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--- 524
            K +   +  E    KE+   + +   ++T+  E    + + L     +++   + +   
Sbjct: 158 EKVRDTIVIKEFLPEKEVVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLI 217

Query: 525 -----------SNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
                      ++ G+        IR+    +  + A+  ++GD +  A+     +  +L
Sbjct: 218 EDVNKEEILIATHDGYCTRFLTDTIRATGRSTQGVKAITLRKGDMVVSAMLIKNPETDIL 277

Query: 566 -LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
            ++ +G                G+ +  L     N  +V+        +L+ ++S G   
Sbjct: 278 TITENGYGKRTSLDEYPQYNRGGKGVINLKVNEKNGKVVSVLEVSEDEELMCITSNGIVI 337

Query: 625 IVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGDHVA 662
               +EI    R   G   +KV+ +EK+  + K+  +   
Sbjct: 338 RTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDL 377


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELME 174


>gi|115456153|ref|NP_001051677.1| Os03g0812000 [Oryza sativa Japonica Group]
 gi|113550148|dbj|BAF13591.1| Os03g0812000 [Oryza sativa Japonica Group]
          Length = 438

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 134/335 (40%), Gaps = 24/335 (7%)

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
           +L++ LR L  LE  +   E  +L  E  K++ LL++ K  +  I  E  ++K  F+   
Sbjct: 1   LLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATP- 59

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSA 542
                R +F E S          +I  E + +++S +G+++ +K          ++  S 
Sbjct: 60  -----RRSFIEDSA-STEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSV 113

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS--GRGHGEAIQLLIDLNHNQ 600
              +  D+    +   T D +L  S  G  Y+  A  +        G  +  L+ L+  +
Sbjct: 114 GKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGE 173

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657
            I +      +     L++++  G    V  +   A    G   ++++  +++K V +  
Sbjct: 174 RITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCG 233

Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715
            D  VA+  +N  +++ + +++  + R  +GV     K+G     +           ++ 
Sbjct: 234 DDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETY 293

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            R  + S   LL       G+G  VP    R G F
Sbjct: 294 SRVRDLSPPWLLFIADN--GIGKRVPLNAFRQGNF 326



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++   V+++  G+I+ +  ++        + ++    GD LK        D + L S +G
Sbjct: 186 EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNG 245

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----------------L 614
               +   N L   G      L + L     + +  +  +T                  L
Sbjct: 246 MVI-VNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWL 304

Query: 615 LVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVAV 663
           L ++  G    V  +        R G    K+  +  +  V  V         + + V +
Sbjct: 305 LFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVL 364

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           V ++  +    +  I   SR  +GV L   +  G
Sbjct: 365 VSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 398


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 95/533 (17%), Positives = 198/533 (37%), Gaps = 69/533 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  ++ + +   + +  + ++++    R+IP + DG KP  R++I +  +  L  
Sbjct: 640  PGTYLDHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKLKT 698

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
                 +    V E     + HGDQ++  ++V LAQ F       L+   G FG  ++ G 
Sbjct: 699  EIKVHQLQGYVSE--HSAYHHGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGK 756

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    + ++  L+    DE  +++ +  + +  EP  +    P +L NG  GI 
Sbjct: 757  DAASARYIFTAVPRITRLMFHADDEPLLNYLE-DDGQSIEPEWYAPVVPQVLLNGAEGIG 815

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T +P++N +E+ +     +           EY+     P           I  +  
Sbjct: 816  TGWSTFVPNYNPREVVDNLRRRMAGE--------EYV-----PMNPWYRGFVGGIEPA-- 860

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LIIAKRIPLLEDIRD 303
               G  R R      ++   +W   +TE+P +V      E + E ++ + + P +     
Sbjct: 861  ---GPERFRVTGIARQLDERTW--EITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYK 915

Query: 304  ESAED--VRIVLFPKNRSLD--PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            E   D  V  V+    R ++    +  ++ F LS M +   + +     G++ +      
Sbjct: 916  EYHTDTSVHFVVELNPRGMEEIERVGPDTFFKLSTMLSTSNMVLFNPE-GKIKKYATPQE 974

Query: 360  ILKEWLAHRREVLFRRSSFR------------------------------MQAIDRRVEI 389
            IL+++   R     RR                                   +      E+
Sbjct: 975  ILEDFYFVRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMIIARELSVSNKKKAAIVEEL 1034

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
             +    A+  ++     +  E           + +    D +L++ + SL +    ++  
Sbjct: 1035 RQLKFQAFPKVEAKAKSVTEEAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLK 1094

Query: 450  ELDNLLAEKEKIDSLLN-SGKQQWNQ-IACEIREVKEIFSKSTDLGRRRTTFC 500
            E D+   E   +  LL  S +  W++ +   + E  E  ++        TT  
Sbjct: 1095 ERDHTETE---LKILLGRSPQNLWDEDLTAFLEEWDEKLAEDARNASMTTTHV 1144


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 170/411 (41%), Gaps = 31/411 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  ++    + +  + ++++    R+IP + DG KP  R++++      L  
Sbjct: 645  PGTYLDHTLSKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKK 703

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 704  DMKVVELAGHVSGMTA--YQHGDASLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLQGGS 761

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NGT GI 
Sbjct: 762  DCASARYIYTRLSPFARRVYHSHDDPLLTYNE-DDGEKIEPEIYMPVVPMILVNGTDGIG 820

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I E    ++D          E I        G   E          
Sbjct: 821  TGWSSSIPNYNPEDIVENLRRMMDG---------EEIKPMQPWFRGFNGEV--------- 862

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 863  TDMGGDRYKFSGIIKET--GDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 920

Query: 304  E-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
              +   V  V+    + +   L           ++    N+      GR+ +   +D IL
Sbjct: 921  YNTHHKVHFVIQMDEKHMTAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYAGVDDIL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            KE+   R +   RR  +++  + R ++ L         I +   ++  + K
Sbjct: 981  KEFYTIRLKYYERRKQYQLSEMQRELDRLSNQARFVQMIIDGDLVVSKKKK 1031


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 203/532 (38%), Gaps = 70/532 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 659  QFKPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 717

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 718  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 775

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 776  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNE-DDGEKIEPEIYVPVVPMILVNGAD 834

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D  E            P F      V        
Sbjct: 835  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPM-------QPWFRGFTGEV-------- 879

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D
Sbjct: 880  ---TDVGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKD 934

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +    V  V+    +++   L           +T    N+      GR+ +   +D
Sbjct: 935  YKDYNTHTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVD 994

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             ILKE+  +R +   +R  +++  + + ++ L         I +   ++  + K      
Sbjct: 995  DILKEFYTYRLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQE 1054

Query: 413  ---------PKPVMVSRFSLTENQ-------------------VDAILNLRLRSLRKLEE 444
                     PK     +    E                      D +L + + SL +   
Sbjct: 1055 LKDKGYKAFPKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERV 1114

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             +++ ++     E + +  +  S +  W     ++ +    +    +   RR
Sbjct: 1115 EKLRRQIGEKEVEVDAL--IKMSKEDIW---KRDLDDFIAEWRFQLEDEHRR 1161


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPV RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+ PNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELME 174


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/531 (16%), Positives = 203/531 (38%), Gaps = 67/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 771  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 947  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 990  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1045

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 1046 YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K      
Sbjct: 1106 DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQE 1165

Query: 414  -----------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                         +    +  +++ +  D +L++ L SL +   
Sbjct: 1166 LQEKGFKPFPKVVGTPEPGEAGDVEEEEDEEEETTTAAVSSDAYDYLLSMPLWSLTQERV 1225

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++ +   E + +   L         +   I E +       +  ++
Sbjct: 1226 DKLRRQIGDKEMEVDALIK-LTKEDLWRKDLDEFISEWRFQLEDEDNRRKK 1275


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/471 (18%), Positives = 189/471 (40%), Gaps = 49/471 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLTN 673

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E  G  + HG+QS+  ++V +AQ +       L+   G FG+    G 
Sbjct: 674  EMKVAQFSGYVAEHSG--YHHGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLGGK 731

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY   +++     +    D+  + + +  +    EP  +    P LL NG +GI 
Sbjct: 732  DSASARYIFTKLSPATRQVFNQSDDVLLKYLE-DDGSSIEPEWYVPAIPFLLVNGANGIG 790

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IPS+N ++I +    L     IS ++++         TG I+            
Sbjct: 791  TGFSTDIPSYNPKDIIDNVKRL-----ISGKEMVPMTPWYKGFTGTIVQN---------- 835

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
               G F  +    V         +VV+E+P     S   + +  L+  K I    +   E
Sbjct: 836  -DNGTFTCKGVAKV-----NGKVVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKHTE 889

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFM--LSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                   V+F  + S +PD+ +  +     +     F          ++ +      I++
Sbjct: 890  KN-----VMFEIDYSGEPDISILKLEKVIRTTNMHAFDPQG------KIKKYADPLDIIR 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   RRE   +R ++ ++ +  +  I +     +   +N + +++          +   
Sbjct: 939  DWFEVRREFYTKRKNYLLKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +F  +E     +L++ + SL      +++ E + L  E     S+L +  +
Sbjct: 999  KFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKE----LSILENTSR 1045


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/546 (19%), Positives = 207/546 (37%), Gaps = 77/546 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K+++    +    + ++++    R+IP + DG KP  R+++ A  +  L  
Sbjct: 721  PGTYLDHSTKSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTK 779

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  +++ LAQ F        +   GNFG+    G 
Sbjct: 780  DQKVVELAGYVSEKAA--YHHGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGS 837

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  I   +DE  ++ +   + +  EP V+    P +L NG  GI 
Sbjct: 838  DAASPRYIHTRLSPFARKIFSVLDEPNLEVQ-MEDGKPIEPKVYAPIIPMVLCNGADGIG 896

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIVESY 243
             G +TSIP+++  EI  A    +   +    +   +  + P F       E  E      
Sbjct: 897  TGWSTSIPNYHPMEIVRAIKRRMGRLDSDDTEGKPFETMMPWFRGWKGTPEPAE------ 950

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIR 302
               +  ++      + E    +  I++ E+P ++       K+ E+I   + P  ++D +
Sbjct: 951  ---KDRYKFNG---IYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYK 1004

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
            + +       +   +     D+          +  RF LN  V +          R+ + 
Sbjct: 1005 EFNDHKNVNFVIQLDEKHYKDIH----KTHEGIMDRFKLNKQVATSNLVAFDSTGRIRKY 1060

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP- 413
              ++ IL+E+  +R ++   R    +         LK        I +   I+  + KP 
Sbjct: 1061 EKVEDILEEFYVYRLDMYSARKKHWLGVYHSDYRKLKNQARFIQEIIDGELIVSKKRKPV 1120

Query: 414  -------------------KPVMVSRFSLTEN-----------QVDAILNLRLRSLRKLE 443
                               K        +  +             D +L+L + SL  LE
Sbjct: 1121 LVQELRDRKYEAFPKNDGKKQATTEEEDMDASDNEDDSVGGAADYDYLLSLPIWSLT-LE 1179

Query: 444  EYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACE--------IREVKEIFSKSTDLGR 494
              +  +    ++ +K + D+LL  S K  W Q   E        +    +I SK   +GR
Sbjct: 1180 RLERLN--SAIMKKKGEHDALLAQSEKDLWCQDLDEFTEEWEAQLEMDDKIQSKINRMGR 1237

Query: 495  RRTTFC 500
            RR+   
Sbjct: 1238 RRSRKI 1243


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 206/538 (38%), Gaps = 74/538 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++   +  L  
Sbjct: 774  PGTFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFKRNLKK 832

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 833  DMKVVELAGHVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGA 890

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  GI 
Sbjct: 891  DCASARYIYTRLSPFARRVFNQQDEPLLTYNE-DDGEKIEPELYVPVVPLILINGADGIG 949

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I      ++D  E            P F      V           
Sbjct: 950  TGWSSSIPNYNPEDIVANLKRMMDGEEPEPM-------QPWFRGFNGEV----------- 991

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
              +G  R +    + E+      + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 992  TPQGPDRYKFSGRIHELNDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 1049

Query: 304  ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             +    V  V+    + L   +            T    N+      GR+ +   +  IL
Sbjct: 1050 YNTHTKVHFVIQMDEKHLKAAVDEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVSDIL 1109

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413
            KE+ A R +   RR   ++  + ++++           I +   ++  + K         
Sbjct: 1110 KEFFAVRLKYYERRKQHQLSELQKQLDKFTNQARFIQMIIDGKLVVSKKKKATLITELKE 1169

Query: 414  -------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                     +    +   +  N  D +L + + SL +    ++ 
Sbjct: 1170 KGFKPFPKVAEAVKAGETEQVVEEEESSEEANTEMASNAYDYLLGMAIWSLTQERVEKLL 1229

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIAC--------EIREVKEIFSKSTDLGRRRTT 498
             ++ +   E +++  L  S ++ W +           ++ E      K   LGRR+++
Sbjct: 1230 RQIGDKEVEIDELIKL--SKEEIWRRDLDGFINEWRFQLEEEHRRERKVASLGRRQSS 1285


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/521 (17%), Positives = 190/521 (36%), Gaps = 64/521 (12%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +S    + +  + ++++    R+IP + DG KP  R++++      +       + A  
Sbjct: 801  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKDVKVVELAGS 859

Query: 79   VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DGDSAAAYRYTEA 134
            V       + HG+ S+  ++V LAQ FV       +   GNFG+    G  AA+ RY   
Sbjct: 860  VSGSTD--YAHGEASMQGTIVNLAQNFVGTNNINFLEPSGNFGSRLKGGADAASARYIYT 917

Query: 135  RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            R++  A  I  G D+  + + ++ +    EP +F    P +L NG+SGI  G ++ IP+ 
Sbjct: 918  RLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNF 976

Query: 195  NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            N  +I E     +  P  + E +   I      TG                  G  R + 
Sbjct: 977  NPMDIIENIKRRMQ-PGATKEDMTPMIPWYKGFTGT-------------TTELGPDRYQF 1022

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRIVL 313
               V + G     + +TE+P +       EK+ E+I A++ P  ++D  D +  D    +
Sbjct: 1023 TGTVRQTGDNE--VEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHFI 1080

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREV 371
                     + + + +     +      +  V       + +   +  I++E+   R   
Sbjct: 1081 IKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHVRLRY 1140

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------ 413
              +R   ++Q +++    +         I +   I+  + K                   
Sbjct: 1141 YEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLIVSKKKKAVLVQELKKLGFTPFPKVE 1200

Query: 414  --------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                          +    +   ++ N  D +L + + SL +    ++  ++     E +
Sbjct: 1201 EAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEKQHEID 1260

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +  L  S K  W     ++    + ++   +   +R    
Sbjct: 1261 TLIKL--SPKDIWKV---DLDAFMDEWNLQLEEEVKRKKKI 1296


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/531 (16%), Positives = 203/531 (38%), Gaps = 67/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 771  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 947  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 990  --EVSGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1045

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 1046 YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K      
Sbjct: 1106 DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGELVISKKKKAVLIQE 1165

Query: 414  -----------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
                                         +    +  +++ +  D +L++ L SL +   
Sbjct: 1166 LQEKGFKPFPKVVGTPEPGEAGDVEEEEDEEEETTTAAVSSDAYDYLLSMPLWSLTQERV 1225

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++ +   E + +   L         +   I E +       +  ++
Sbjct: 1226 DKLRRQIGDKEMEVDALIK-LTKEDLWRKDLDEFISEWRFQLEDEDNRRKK 1275


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/492 (21%), Positives = 205/492 (41%), Gaps = 40/492 (8%)

Query: 6   ISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + NSN    +E+         + +    Y+      RAIP   DG KPV RRI+ AM   
Sbjct: 1   MKNSNPPKSKESFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW-- 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                         V  +    HPHGD+S+ D+L ++AQ F      PL+SG+G FG++ 
Sbjct: 59  -NSDARNRYTKTVKVAGLAMGYHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVL 117

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  + A+ RYTE +++   + +        +D+   Y+E + EP+ F  K P +L N   
Sbjct: 118 DPSAIASPRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQ 177

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIA G    IP H + +I ++               + Y+      +     +     V+
Sbjct: 178 GIATGFRCFIPGHRLADIVKSQ--------------INYLKSKKPLSLKPWYKDFNGEVK 223

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                 G   +   +  +  G     + +T+ P    + ++I  + + I+ ++   L+D 
Sbjct: 224 MAETETGNITMSTTFAFKWEGD---TLYLTDSPMNWNREKVISLLDD-ILERKDSWLKDY 279

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D S++  R+ L  K         + ++F   D++T   L MNV++     +    + I+
Sbjct: 280 VDYSSQTFRVELQYKKGEKPSQKEIMALFNKEDVQT---LAMNVITYDGKLKNFKPEEII 336

Query: 362 KEWLAHRREVLFRRSS----FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           K +   R+  L RR         + I+R  E+++   I     +++I I   +D  + + 
Sbjct: 337 KRFCDFRKTHLIRRFKRLSGLEEEKIERNSELIR--FIKEKWNEKVIGIKSKKDFEEKLK 394

Query: 418 VSRFSLTEN-QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            S+F   E      +  + +  ++K EE  +++          +   L+   K+    + 
Sbjct: 395 TSKFKYFEWLSTIPVYRMTIEEVKKCEEAIVEA-----KTTLARYQGLVKEDKKLTEFMI 449

Query: 477 CEIREVKEIFSK 488
            E+ E++  + K
Sbjct: 450 IELEELQNKWDK 461


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 91/531 (17%), Positives = 202/531 (38%), Gaps = 67/531 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 771  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 830  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 888  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 947  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 989

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P         +K+ E+I A+++P  ++D
Sbjct: 990  --EVTGSGDRYKFSGIIKQTADNE--VEITELPICTWTQDFKDKLEEIIKAEKVPSFIKD 1045

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 1046 YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K      
Sbjct: 1106 DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQE 1165

Query: 413  ---------PKPVMVSRFS-------------------LTENQVDAILNLRLRSLRKLEE 444
                     PK V                          + +  D +L++ L SL +   
Sbjct: 1166 LQEKGFKPFPKVVGTPEPGEAGDVEEEEDEEEETTTAAASSDAYDYLLSMPLWSLTQERV 1225

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +++ ++ +   E + +   L+        +   I E +       +  ++
Sbjct: 1226 DKLRRQIGDKEMEVDALIK-LSKEDLWRKDLDEFISEWRFQLEDEENRRKK 1275


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 1058

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 190/464 (40%), Gaps = 43/464 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 +++ +  + +   + +  + ++     ER+IP + DG KP  R+I+ +  +  L 
Sbjct: 614  EPGNQLDQKLTKIPVEDFINKDLILFSRYD-VERSIPSVVDGLKPSQRKILFSALKRNLV 672

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A    E  G  + HG+ S+  ++V +AQ +       L+  +G FG+    G
Sbjct: 673  QEIKVAQFAGYTSENAG--YHHGEASLQGAIVGMAQDYVGSNNINLLLPRGQFGSRLHGG 730

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY   +++     I    DE  +++ +  + +  EP  +    P LL NG+SGI
Sbjct: 731  KDSASARYIFTQLSPNTRDIFHKADERLLNYLE-DDGDRIEPEYYVPTIPFLLVNGSSGI 789

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP++N ++I +    LI+N  +              P        +  I    
Sbjct: 790  GTGFSTNIPAYNPKDIVDNVKRLINNETM-------------LPMTPWYRGFKGDIK--- 833

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F     + +         + V+E+P     +   E +  LI      ++ D R+
Sbjct: 834  ETSPGVFTCSGVYDI-----KGKTVTVSELPVGTWTNDYKEHLETLIEK---KIVADFRE 885

Query: 304  ESAEDVRIVLFPKNRSLDPDLL-MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
               E           +LDP++L +ES    ++M    P        G++ +      I+ 
Sbjct: 886  RHTELNVHFEIDFVGTLDPNILKLESTIRTTNMHAFDP-------SGKIKKYDSPLEIIA 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419
            +W   R+E   +R    ++ +  RV + +       ++++   +I     ED  K +   
Sbjct: 939  DWFTTRKEFYVKRKEDLLKDLKARVLVAQNKSRFITSVNDGTLVITRRAEEDVIKDLGKL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            +F   +   D +L +++ SL K    ++++E   L  E   +++
Sbjct: 999  KFYKVDKSFDYLLGMKISSLTKERAEKLQAEAAALEKELVILEN 1042


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/173 (54%), Positives = 135/173 (78%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ 
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E   E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           P V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + LIDNPE S++ L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 172/412 (41%), Gaps = 21/412 (5%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 785  PGTFLDHSTKEITYTDFVSKELILFSMADNL-RSIPSVIDGLKPGQRKVLYACFKRNLTK 843

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  +++ LAQ F       ++   GNFG+    G 
Sbjct: 844  DKKVVELAGYVSEHTA--YHHGEASLQQTIIGLAQDFVGSNNINVLEPSGNFGSRLAGGS 901

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R+   A+ I   +DE  +  +   + +  EP V+    P +L NG  GI 
Sbjct: 902  DAASPRYTFTRLAPFAKKIFSPLDEACLKHQY-EDGKRIEPEVYSPILPMVLVNGADGIG 960

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  +I +     +   +    +         F T        +   E+  
Sbjct: 961  TGWSTTIPNYHPADIVKNLKRRMGRLDEDDAE------EKPFETMTPWFRGWKGNPEA-- 1012

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +      +  +    I++TE+P ++       K+ ++I     P  ++D ++
Sbjct: 1013 --AGPDRYKFNGIASQNDQNPNEIIITELPIRMWTDDFKAKLEKVISGSDGPTWIKDYKE 1070

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
             +           +    P +L E +     +  +   +  V   + G++ +   ++ IL
Sbjct: 1071 FNDHKTVHFEIMVDEKHLPKILEEGLLERFKLTKQIATSNLVAFDTRGQIRKYEKVEDIL 1130

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            +E+  HR ++   R  + +Q  D  +E LK        I +   I+  + K 
Sbjct: 1131 EEYYVHRLQMYHARKQYWLQVYDNDLEKLKNQYRFIKEIIDGELIVGRKKKA 1182


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 53/323 (16%)

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
              G  P+ + L  +L+ +++ R EV+ RR+ F ++    R  +L GL IA  NIDE+I 
Sbjct: 1   ALNGGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIR 60

Query: 406 IIRNEDKPKPVMVS-----------------------------RFSLTENQVDAILNLRL 436
           +IR    P+                                   ++L+E Q  AIL LRL
Sbjct: 61  VIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRL 120

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             L  L   +I  EL+ +  E +    +L+S  +    +  E+  V++ F        RR
Sbjct: 121 ARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTP-----RR 175

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEG 548
           T   E+         + +I +E + V +S+ G+I+          +      S +  ++ 
Sbjct: 176 T---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDE 232

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606
           D +      +T   +L  S+ G  Y      L  G     G+A+  ++ L   + I T  
Sbjct: 233 DFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTIL 292

Query: 607 VYDSTC------KLLVVSSKGNA 623
                        ++  +++G  
Sbjct: 293 PLPEDEASWDNLDVMFSTTRGTV 315


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 194/453 (42%), Gaps = 30/453 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++   SL+  ++   L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K 
Sbjct: 3   SLNPRSLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKV 62

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A I G V    + HG+ S  ++   L   +   YP+  GQGNFG+     A++ RY  AR
Sbjct: 63  ASIAGGVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFAR 122

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +++    + +  +   V      +EE   P  +    P +L N TSGIAVG AT I  H+
Sbjct: 123 VSKNFYNLFKDTEYAPVH----PDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHS 178

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            Q++ EA  A+++      E +   +  P+F   G +VE  E          G + +   
Sbjct: 179 FQDVKEAVKAIVEG----REPVAPKVKYPEFR--GEVVELEE---------PGKYELHGT 223

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-F 314
           + +         + +TEIP Q    +   KI + +  K     +D   E     +I    
Sbjct: 224 YKM----TSRTQMEITEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGFGFKIKFRK 279

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLF 373
                   +   E I     +  +   N+ VL+   ++ +      ++++++  R+  + 
Sbjct: 280 EYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTYVQ 339

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE---NQVDA 430
            R   +++  +   ++ +  +     + +   +I+   KP+  ++     +E   +  + 
Sbjct: 340 VRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQG--KPRKKLIEELQASEIYGDYAEK 397

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           ++ + +  +   E  ++  E     AE E   +
Sbjct: 398 LVAMNIYHMTSDEAKKLADEAKAKKAEHEYWKA 430


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 191/529 (36%), Gaps = 75/529 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +N   ++    + +  + ++ S   ER+IP L DG KP  R+++    +        
Sbjct: 1249 LYGKNTDYLTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVK 1307

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ ++  +++ LAQ F       L+   G FG     G  +A
Sbjct: 1308 VAQLAGSVAEMSS--YHHGEAALMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSA 1365

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G 
Sbjct: 1366 SPRYIFTMLSPLARLVFPPMDDNILRFLY-DDNQRVEPEWYMPIIPMVLVNGAEGIGTGW 1424

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            A  IP+ +++E+      L+D  E            P  P+      + + +  +  +  
Sbjct: 1425 ACKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIDELGPNQYVIS 1474

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +     +E          +TE+P +       E++ E ++    K  PL+ D ++ 
Sbjct: 1475 GEVSILDSTTIE----------ITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEY 1524

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +         +     +  +  ++T    N  VL      + +      ILK
Sbjct: 1525 HTDTTVRFVVKMTEDKLAEAEAVGLHKVFKLQTSLTCNSMVLFDHVGFLKKYDSPQDILK 1584

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R      R  + +  +    E  K    A   +++I   I  E+KPK  ++    
Sbjct: 1585 EFFELRLRYYNLRKEWLIGML--GAESAKLSNQARFILEKIDGKIVIENKPKKELIQVLI 1642

Query: 423  LTENQVD----------------------------------AILNLRLRSLRKLEEYQIK 448
                + D                                   +LN+ L  L K ++ ++ 
Sbjct: 1643 QRGYESDPVKAWKEAQNKDEEEGEEEESDKESSSASGPDFNYLLNMPLWYLTKEKKDELC 1702

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDLG 493
             + DN   E E +     S    W +       E+  V+   ++    G
Sbjct: 1703 KQRDNKEKELETLKR--KSPSDLWKEDLAAFIEELDVVEAKQAQDESAG 1749


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 115/156 (73%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            ++A  ++  ++++ VDF D Y+  +  P     KF
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKFPTSCQPKF 163


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLME 174


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/530 (16%), Positives = 204/530 (38%), Gaps = 66/530 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 769  QFKPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 827

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 828  VKKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 885

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 886  GGSDSASARYIYTRLSPFARRLFHQADEPLLA-NNVDDGKVIEPETYVPVVPLILINGAD 944

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       ++L+          G            
Sbjct: 945  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----DELVPMKPWFRGFKG------------ 987

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + ++E+P +       +K+ E+I A+++P  ++D
Sbjct: 988  --EVTGSGDRYKFSGIIKQTGDNE--VEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 1043

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   +          ++     NM       R+ +    +
Sbjct: 1044 YKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRYETPE 1103

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             IL+ + A R ++  +R    +  +  +++ L         I +   +I  + K      
Sbjct: 1104 DILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKALLIQE 1163

Query: 413  ---------PKPVMVSRFS------------------LTENQVDAILNLRLRSLRKLEEY 445
                     PK V                        L+ +  D +L++ L SL +    
Sbjct: 1164 LQEKGFKPFPKVVDTPEPGEAGDVEDEEDEEETATAALSSDAYDYLLSMPLWSLTQERVE 1223

Query: 446  QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            +++ ++ +   E + +   L         +   I E +       +  ++
Sbjct: 1224 KLRRQIGDKEMEVDALIK-LTKEDLWKKDLEEFITEWRFQLEDEENRRKK 1272


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 120/174 (68%), Gaps = 3/174 (1%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +++S   ++ ++  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M   G
Sbjct: 1   MTDS---IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREG 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
                 + KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+
Sbjct: 58  NTANKKYVKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDA 117

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG
Sbjct: 118 PAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/528 (17%), Positives = 201/528 (38%), Gaps = 69/528 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++   +  L  
Sbjct: 664  PGTFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFKRNLKK 722

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 723  DMKVVELAGHVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGA 780

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  GI 
Sbjct: 781  DCASARYIYTRLSPFARRVFNQQDEPLLTYNE-DDGEKIEPELYVPVVPLILINGADGIG 839

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I      ++D  E            P F      V           
Sbjct: 840  TGWSSSIPNYNPEDIVANLKRMMDGEEPEPM-------QPWFRGFNGEV----------- 881

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
              +G  R +    + E+      + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 882  TPQGPDRYKFSGRIHELNDKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 939

Query: 304  ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             +    V  V+    + L   +            T    N+      GR+ +   +  IL
Sbjct: 940  YNTHTKVHFVIQMDEKHLKAAVEEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVSDIL 999

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413
            KE+ A R +   RR   ++  + ++++           I +   ++  + K         
Sbjct: 1000 KEFFAVRLKYYERRKQHQLSELQKQLDKFTNQARFIQMIIDGKLVVSKKKKATLITELKE 1059

Query: 414  -------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                                     +    +   +  N  D +L + + SL +    ++ 
Sbjct: 1060 KGFKPFPKVAEAVKAGETEQVVEEEESSEEANTEMASNAYDYLLGMAIWSLTQERVEKLL 1119

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             ++ +   E +++  L  S ++ W     ++ +    +    +   RR
Sbjct: 1120 RQIGDKEVEIDELIKL--SKEEIW---RRDLDDFINEWRFQLEEEHRR 1162


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/273 (26%), Positives = 135/273 (49%), Gaps = 20/273 (7%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+
Sbjct: 1   IRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRK 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426
            V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E 
Sbjct: 60  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSEL 119

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F
Sbjct: 120 QANAILDMKLGRLTGLEREKIENELAELMKEITRLEEILKSETLLENLIRDELKEIRSKF 179

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSV 538
                         ++         + +I  E + V I++RG+I+          K    
Sbjct: 180 DVP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGK 231

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
              A+   + D ++    A+T D ++ ++  G+
Sbjct: 232 GKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQ 264


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++  +L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELME 174


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 135/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 133/174 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++  +L+E
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELME 174


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 190/521 (36%), Gaps = 64/521 (12%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +S    + +  + ++++    R+IP + DG KP  R++++      +       + A  
Sbjct: 799  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKDVKVVELAGS 857

Query: 79   VGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DGDSAAAYRYTEA 134
            V       + HG+ S+  ++V LAQ FV       +   GNFG+    G  AA+ RY   
Sbjct: 858  VSGSTD--YAHGEASMQGTIVNLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYT 915

Query: 135  RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            R++  A  I  G D+  + + ++ +    EP +F    P +L NG+SGI  G ++ IP+ 
Sbjct: 916  RLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNF 974

Query: 195  NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            N  +I       ++ P  + + +   I      TG                  G  R + 
Sbjct: 975  NPMDIIANIRRRME-PGATKDDMTPMIPWYKGFTGT-------------TTEIGPDRYQF 1020

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDESAEDVRIVL 313
               V + G     + +TE+P +       EK+ E+I A++ P  ++D  D +  D    +
Sbjct: 1021 TGTVRQTGDNE--VEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHFI 1078

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREV 371
                     + + + +     +      +  V       + +   +  I++E+   R   
Sbjct: 1079 IKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHIRLRY 1138

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------ 413
              +R   ++Q +++    +         I +    +  + K                   
Sbjct: 1139 YEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLTVSKKKKAVLVQELKKLGFTPFPKVE 1198

Query: 414  --------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                          +    +   ++ N  D +L + + SL +    ++  ++     E +
Sbjct: 1199 EAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEKQHEID 1258

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +  L  S K  WN    ++    + ++   +   +R    
Sbjct: 1259 TLIKL--SPKDIWNV---DLDAFMDEWNLQLEEEAKRKKKI 1294


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPH D +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|269967411|ref|ZP_06181471.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269827999|gb|EEZ82273.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 277

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 124/254 (48%), Gaps = 9/254 (3%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            KA  ++ ++  EPITVV+S +GWIR  K H VD   L++K GD         +    + 
Sbjct: 7   AKALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVF 66

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           L +DG++Y+L + +L S R  GE I   +++     I    + +     LV S  G  F+
Sbjct: 67  LGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQVIMSEEDQLWLVGSDAGYGFV 126

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMS 682
            + +++++  R GK  + + +  ++    ++     D +  +    ++L+F I  +P+++
Sbjct: 127 CKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKDLPQLA 186

Query: 683 RGKGVRLQSY---KDGGISDVIC--FKICEGLTW-IDSAGRSYNRSENDLLGWLGKRGGV 736
           +GKG ++ +    K     +V+     + +G +  + +  R      +DL  + G+RG  
Sbjct: 187 KGKGNKIINIPAAKAKEREEVLSHLMSLPKGASLTLYAGKRKLGLKPSDLDNFRGERGRR 246

Query: 737 GSLVPKGFPRSGKF 750
           G L+P+G  R  + 
Sbjct: 247 GGLLPRGLQRVTRI 260


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 198/530 (37%), Gaps = 57/530 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   + +S    L+  ++ ++++    R+IP + DGFKP  R++I++  +  L  
Sbjct: 777  PGTFLDSTAQRISYSQFLQNEFILFSMADNI-RSIPSMIDGFKPGQRKVIYSAFKRNLVN 835

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  + E     + HG+QS+  +++ LAQ F        +   GNFG+    G 
Sbjct: 836  DQKVVELAGYISEQAA--YHHGEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSGGK 893

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY   R++  A  +   +DE  ++++   +    EP V+    P +L NG  GI 
Sbjct: 894  DSASARYIHTRLSPFARKVFSKLDEPNLEYQF-DDGNMIEPKVYAPILPMVLVNGADGIG 952

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+++   I E     +   +    +   ++               +   E   
Sbjct: 953  TGWSTSIPNYHPMHIVENLRRRMGRFDPDDTEEKPFVP------MAPWWRGWKGTPE--- 1003

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
                  + R    + +  +    I VTE+P ++       K+ ++I   + P  ++D ++
Sbjct: 1004 -QEAPNKWRFNGIIRQDEQNPNEIHVTELPIRMWTDDFKAKLEDIIQNDKTPTFIKDYKE 1062

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
             +       +   +       L E +     + T       V   + G++ +   ++ I+
Sbjct: 1063 FNDHKTVHFIIDMDEKHREAALREGLLEKFKLTTTVSTTNLVAFDTQGKIRKYDNVEEIM 1122

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +E+  +R ++   R    ++        LK        I +   ++  + K   V   R 
Sbjct: 1123 EEYYHYRLKMYTERKKHWLKVYHADYRKLKNQYRFITEIIDNKMVVNRKKKAVLVQELRD 1182

Query: 422  SLTE-------------------------------NQVDAILNLRLRSLRKLEEYQIKSE 450
               E                                  D +L++ + S       ++K++
Sbjct: 1183 RDYEAFPPKEDKKVKSPDEEMAAEEAEDDDTAGGARDYDYLLSMPVWSFTSERLERLKNQ 1242

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +    AE +++ +L  S K  W     ++   +E +     L     T  
Sbjct: 1243 IAAKKAEHDELQAL--SEKDLW---VKDLDAFQEEWETQLKLDDEIATGI 1287


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 191/507 (37%), Gaps = 63/507 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K +     +    + ++++    R+IP + DGFKP  R++I+A  +  L  
Sbjct: 755  PGTFLDHSAKQICYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVIYACFKRNLIK 813

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+QS+  +++ LAQ F        +   GNFG+    G 
Sbjct: 814  DKKVVELAGYVSEQTA--YHHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGS 871

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R++  A  I   +DE  +      + +  EP+V+    P +L NG  GI 
Sbjct: 872  DAASPRYTFTRLSPFARKIFHPMDEPNLLHHY-EDGKKIEPMVYAPILPMVLVNGADGIG 930

Query: 185  VGMATSIPSHNVQEICEAALALIDN--PEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
             G +++IP+++  +I +     +       + EK  E +  P F       E        
Sbjct: 931  TGWSSNIPNYHPADIVQNLRRRMGRLDENDTEEKPFETM-MPWFRGWKGTPE-------- 981

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLL 298
                 G  R +         +    IV+TE+P +V       K+ ++I  +     I   
Sbjct: 982  ---AAGPDRYKFNGVAYANEQKDNEIVITELPIRVWTDDFKAKLEKVISGELGPSWIKDY 1038

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++  D S     I +  K+     +  +   F L+       L     + GR+ +   ++
Sbjct: 1039 KEFNDHSTVHFEIAVDDKHMGKVMEEGILERFKLTKQVATSNLVAFD-TSGRIRKYEKVE 1097

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             IL+E+  +R ++   R    +      +  L+        I +   ++  + K      
Sbjct: 1098 EILEEFYQYRLDMYTDRKKHWLGVYHADLRKLQNQARFIKEIIDNKLVVGKKKKAVLVQE 1157

Query: 414  ---------------KPVMVSRFSLTENQ------------VDAILNLRLRSLRKLEEYQ 446
                           K          +NQ             D +L++ + SL      +
Sbjct: 1158 LRDRDYEAFPPRGDKKKTADEEEEDDDNQDVEGDSEGGARDYDYLLSMPIWSLTA---ER 1214

Query: 447  IKSELDNLLAEKEKIDSLLN-SGKQQW 472
            ++     +  +K + + LL  S K  W
Sbjct: 1215 LEKLKQAIEKKKAEHEELLALSEKDLW 1241


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLME 174


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/518 (16%), Positives = 184/518 (35%), Gaps = 81/518 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 719  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC 777

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 778  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 835

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 836  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 894

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I E          I+ E LL  I                     Y+  
Sbjct: 895  YSSFIPNYNYKDIIENIKRY-----INKEPLLPMIP-------------------WYKDF 930

Query: 247  RGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G         + + E+P +       E + EL+  ++  L+ D  
Sbjct: 931  KGRIESNGKTGYETIGIIHKIDDETLEINELPIKKWTQDYKEFLEELLTDEKHQLIVDYI 990

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGI 360
            D S+ +        + +       E +  +  +++        L    +   +      I
Sbjct: 991  DNSSHEDICFTIKMDPAKMKKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDI 1050

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID------------------- 401
            LK++  HR +    R S+ +  +++  +I+       L I                    
Sbjct: 1051 LKDFCFHRLKAYENRKSYLISKLEKEKKIISNKSKFILAIVNNELVVSKKKKKVLVEELY 1110

Query: 402  -------EIIAIIRNED-----------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                   + I  I+ E+            P+        ++    D +L++ + SL   +
Sbjct: 1111 RKGYDPYKDINKIKKEEIFEQELLESVENPEDNEEIIAGISVKDYDYLLSMPIFSLTLEK 1170

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
              ++ ++      E E + ++      L   ++    I
Sbjct: 1171 VEELLAQHKEKEKELEILKNITVETMWLKDIEKVEEAI 1208


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/529 (17%), Positives = 188/529 (35%), Gaps = 65/529 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++   + +S    + +  + ++++    R+IP + DG KP  R++++      +  
Sbjct: 792  PGQHLDLTTQEISYDDFVNKELILFSMADNL-RSIPSVIDGLKPGQRKVMYTCFRRNIKK 850

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DGD 124
                   A  V       + HG+ S+  ++V LAQ FV       +   GNFG+    G 
Sbjct: 851  DVKVIDLAGSVSGTTD--YAHGESSMQGTIVGLAQNFVGTNNINYLEPSGNFGSRLKGGA 908

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  I    D+  + + ++ + +  EP ++    P +L NG+SGI 
Sbjct: 909  DAASARYIYTRLSPFARRIFHAHDDALLKYGES-DGKPIEPEMYIPVLPTILINGSSGIG 967

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ IP+ N  EI +     +     + E +   +      TG       E + E+  
Sbjct: 968  TGWSSEIPNFNPMEIIDNIRIRMK-EGATKEDMRPMVPWYKGFTG-----RTEELGENRY 1021

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R      VE          VTE+P +       EK+ E+I A + P  ++D  D
Sbjct: 1022 QFTGTIRQTGDNEVE----------VTELPVRYWTQDFKEKLEEIIKADKTPSFIKDYID 1071

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGIL 361
             +  D    +           L + +  +  +         V       + +   +  I+
Sbjct: 1072 YNTPDRVHFIIKMEDKYMAAALAKGLEEMFKLFKPQSTTNLVAFDAHGRIHKYATVLDII 1131

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE------------------- 402
            +E+   R     +R   +++ + + +  +         I +                   
Sbjct: 1132 EEFYHVRLRYYEKRKQHQLEVMHKELSKMTNQAKFIQMIIDGKLVVSKKKKLALVQELKK 1191

Query: 403  -IIAIIRNEDKPKPV-------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
                 I   D  K                 +    + +  D +L + + SL +    ++ 
Sbjct: 1192 LGFTPIPKVDDAKKAGEIDDVQEDEEDTDETEAGASASDYDYLLGMAIWSLTQERVEKLL 1251

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             ++     E + +  L  S K  WN    ++    E ++   +   +R 
Sbjct: 1252 KQIGEKEEEIDTLIKL--SPKDIWNV---DLDAFVEEWNTQLEQENKRK 1295


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 198/503 (39%), Gaps = 58/503 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++   K ++    + +  + ++++    R+IP + DG KP  R++++A  +  L  
Sbjct: 795  PGTYLDHTDKMLTYDNFINKELILFSMADNM-RSIPSVIDGLKPGQRKVMYACFKRNLIN 853

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V ++    + HG+ S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 854  DMKVVELAGYVSQISA--YHHGEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQGGS 911

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY   R++  A  +   +D+  +++ +  + +  EPV +    P +L NG  GI 
Sbjct: 912  DSASARYIFTRLSPFARRVYSALDDPVLEY-NIDDGKSIEPVTYFPVVPMVLINGAEGIG 970

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP+++  E+       +   + S E+     + P F       E          
Sbjct: 971  TGWSTNIPNYHPVEVVNNLKRRMGRLDDSGEEKPFETMMPWFRGWKGTPEP--------- 1021

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
               G  R +    + E   G   + +TE+P ++       K+ E+I A+++P  ++D ++
Sbjct: 1022 --AGPDRYKFNGIIRET--GDTEVEITELPIRMWTDDFKAKLEEVIKAEKVPSFIKDYKE 1077

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESI-FMLSDMETRFPLNMNVLSMG-RVPQVMPLDGIL 361
             +      ++   +     + L E +       +T    N+       ++ +   ++ IL
Sbjct: 1078 FNDHKNVHMIIQMDDKHMKEALKEGLAEKFKLNKTVATSNLVAFDHRGQIRKYDKVEDIL 1137

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------K 414
            +E+   R ++   R +  M+ ++     L         I E   I+  + KP       K
Sbjct: 1138 EEFYEQRLKMYTVRKAHWMKKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLVAELRK 1197

Query: 415  PVMVSRFSLTE-------------------------NQVDAILNLRLRSLRKLEEYQIKS 449
                    +T+                            D +L L + SL +    ++  
Sbjct: 1198 RGYEGFPKITDAKKAGEADDVVENEEEVTADEDAGARDYDYLLGLPIWSLTQERVDKLNK 1257

Query: 450  ELDNLLAEKEKIDSLLNSGKQQW 472
            ++ +   E + +D L  S K  W
Sbjct: 1258 QMYDKKDEIDTLDRL--SEKDLW 1278


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella virus
            MT325]
          Length = 1058

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 186/471 (39%), Gaps = 49/471 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLTN 673

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E  G  + HG+QS+  ++V +AQ +       L+   G FG+    G 
Sbjct: 674  EMKVAQFSGYVAEHSG--YHHGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRILGGK 731

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   +++ V   +    D+  + + +  +    EP  +    P LL NG +GI 
Sbjct: 732  DCASARYIFTKLSPVTRQVFNQADDVLLKYLE-DDGSSIEPEWYVPAIPFLLVNGANGIG 790

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IPS+N ++I      LI   E+              P      E   SIV++  
Sbjct: 791  TGFSTDIPSYNPKDIINNVKRLISGKEM-------------VPMTPWYKEFTGSIVQN-- 835

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
               G F  +    V         +VV+E+P     S   + +  L+  K I    +   E
Sbjct: 836  -DNGTFTCKGVAKVSG-----KSVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKHTE 889

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFM--LSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                   VLF  +   +PDL +  +     +     F         G++ +      I+ 
Sbjct: 890  KN-----VLFEIDFPGEPDLSILKLEKAIRTTNMHAFDP------EGKIKKYADPLDIIL 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   R+    +R ++ ++ +  +  I +     +   +N + +++          +   
Sbjct: 939  DWFEVRKTFYTKRKNYLLKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            +F  +E     +L++ + SL      +++ E + L  E     S+L +  +
Sbjct: 999  KFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKE----LSILENTSR 1045


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 20/275 (7%)

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++RDES  D   ++    R    ++++ ++F  + ME  F + M  ++    P+V  L 
Sbjct: 1   SEVRDESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKE-PKVFSLL 59

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKP 415
            +LK +L HR+ V+ RR+ F +Q    R  IL+GL IA  NID +I +I+        + 
Sbjct: 60  ELLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARD 119

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
            ++++F L+E Q +AIL++RL  L  LE  ++++EL  +L   EK+D++L S     N I
Sbjct: 120 GLMAKFGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENII 179

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+ E+K  F              ++         + +I  E + V I++RG+I+    
Sbjct: 180 RDELLEIKSKFKCP--------RITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPS 231

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
                 K       A+   + D ++      + D 
Sbjct: 232 KSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 266


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 133/270 (49%), Gaps = 20/270 (7%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR
Sbjct: 1   GIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHR 59

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425
           + V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E
Sbjct: 60  KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSE 119

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  
Sbjct: 120 LQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSK 179

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHS 537
           F              ++         + +I  E + V I++RG+I+          K   
Sbjct: 180 FDVP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGG 231

Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLS 567
               A+   + D ++    A+T D ++ ++
Sbjct: 232 KGKLAVTTYDDDFIESFFTANTHDTLMFVT 261


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 102/253 (40%), Positives = 154/253 (60%), Gaps = 3/253 (1%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA-FKKSA 76
             V +   L + +L+YA   I  R + D RDG K V RRII +M E+   +    +KK A
Sbjct: 5   YDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCA 64

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVGEVIGK HPHGD+SVYD+L+RLAQ       LI+G GNFG+++ ++AA  RYTEAR+
Sbjct: 65  RIVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYNAAA-MRYTEARI 123

Query: 137 TQVAELILQGV-DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +     +L    +++ +D+   ++  + EP V  SK P LL NG SGIAV + T+IPSHN
Sbjct: 124 SDFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHN 183

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + ++  A++  + N +I+ ++L   I  PDF TGGII+ +++++ + Y  G+G   +R+ 
Sbjct: 184 IVDVINASINFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRSN 243

Query: 256 WCVEEVGRGSWCI 268
              E   +    I
Sbjct: 244 RFYEYAHKNKTDI 256


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 93/174 (53%), Positives = 134/174 (77%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE++ + L+E
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLME 174


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 88/209 (42%), Positives = 143/209 (68%), Gaps = 6/209 (2%)

Query: 101 LAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+T  ++++L  + +  V+++  ++
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNFD 61

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN+L NG++GIAVGMAT IP HN++E+  A + L+++P+ S++ LL+
Sbjct: 62  GTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLLD 121

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           +I GPD+PT   I+   E I + Y  G+G  R+RAR+  E+       I+VT +P+QV  
Sbjct: 122 HIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMRARYEREQ-----GEIIVTTLPHQVSG 176

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED 308
           +R++E+IA  + AK++P++ED+RDES  +
Sbjct: 177 ARVLEQIAAQMQAKKLPMVEDLRDESDHE 205


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 117/152 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ V
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           D+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VY ++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 21/252 (8%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +SRF L+E Q  AIL++RLR L  LE  +I+SE ++LLA    +  +L   ++    I  
Sbjct: 1   MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 60

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS----- 532
           E+ EVK  ++ +      R T   +     +   + +IE+E + + +SN+G+I+      
Sbjct: 61  EMDEVKRKYADA------RRTELMIGEV-LSLEDEDLIEEEDVLITLSNKGYIKRLAQDE 113

Query: 533 ---LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
               K     +        D ++  +   T D +L  +  G+ Y L A  +        G
Sbjct: 114 FRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKG 173

Query: 588 EAIQLLIDLNHNQDIVTAFVYD----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
             I  L+ L+  + I T         +       + +G       SE     + G   + 
Sbjct: 174 LPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAIN 233

Query: 644 VSSEEKMKLVVK 655
           +   +++  V+ 
Sbjct: 234 LKENDELINVLL 245



 Score = 44.7 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK-LVVKVTGDHVAVVGENRKL 670
           L+ +S+KG    + + E  A  R  +G     V++++ ++ LV   T D V       ++
Sbjct: 97  LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 156

Query: 671 LIFSIDQIPEMSR-GKG---VRLQSYKDGGISDVICFKICEGL 709
                 +IPE  R  KG   V L    +G     I     E +
Sbjct: 157 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 199


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/191 (44%), Positives = 134/191 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V+ ++L   + +R+  Y+   I+ERA+PD+RDG KPV RRI+ +M++ G  F   F+K
Sbjct: 8   QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYTEA
Sbjct: 68  SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           R++Q++  +L+ +D++ VDF   +++ + EP V P+K+PNLL NG++GI+ G AT IP+H
Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187

Query: 195 NVQEICEAALA 205
           N+ EI +  + 
Sbjct: 188 NLAEIIDGTVY 198


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/529 (19%), Positives = 199/529 (37%), Gaps = 70/529 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 760  QFKPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 818

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 819  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQ 876

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  
Sbjct: 877  GGSDCASARYIYTRLSPFARRVFHAHDDPLLTYNE-DDGEKIEPEIYVPVVPMILVNGAD 935

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I +    L+D  E            P F      V        
Sbjct: 936  GIGTGWSSSIPNYNPEDIVDNLKRLMDGEETRPM-------QPWFRGFTGEV-------- 980

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                  GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P    I
Sbjct: 981  ---TDVGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTP--SFI 1033

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +D    +    L  KN        +E  F LS       L       GR+ +   +D IL
Sbjct: 1034 KDYKDYNTHTKLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPE-GRITKYATVDDIL 1092

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------- 412
            KE+  +R +   +R  +++  + + ++ L         I +   ++  + K         
Sbjct: 1093 KEFYTYRLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKD 1152

Query: 413  ------PKPVMVSRFSLTENQ-------------------VDAILNLRLRSLRKLEEYQI 447
                  PK     +    E                      D +L + + SL +    ++
Sbjct: 1153 KGYKAFPKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKL 1212

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            + ++     E + +  +  S +  W     ++ +    +    +   RR
Sbjct: 1213 RRQIGEKEVEVDAL--IKMSKEDIW---KRDLDDFIAEWRFQLEDEHRR 1256


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 122/157 (77%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPVHRR++ AM E+  D+   +KKSARIVG+VIGK HPHGD +VYD++VR+A
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RY L+ GQGNFG++DGD+AAA RYTE RM ++   +L  +D++ VDF   Y+  +
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
            +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/153 (56%), Positives = 117/153 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           + I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   AVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             Y+  +  P V P+K PNLL NG+SGIAVG A
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/268 (26%), Positives = 133/268 (49%), Gaps = 20/268 (7%)

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ R
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKTVIIR 59

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AI
Sbjct: 60  RTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAI 119

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F     
Sbjct: 120 LDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP-- 177

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    ++         + +I  E + V I++RG+I+          K       A+
Sbjct: 178 ------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAV 231

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGK 571
              + D ++    A+T D ++ ++  G+
Sbjct: 232 TTYDDDFIESFFTANTHDTLMFVTDRGQ 259


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/174 (51%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             R+ L+ G GNFG++DGD  AA RYTEARM++++  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V PS+FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+++   L+E
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLME 174


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 194/492 (39%), Gaps = 54/492 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 238 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 296

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI---D 122
                 + A  V E     + HG+QS+  +++ LAQ F       L+   G FG      
Sbjct: 297 SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 354

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            D+AAA  Y    + ++   I    D+    +    +E+  EP  +    P +L NG  G
Sbjct: 355 KDAAAARXYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEG 413

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +T IP  N  EI +    L+++     E+L +        TG I     E I   
Sbjct: 414 IGTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP- 462

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLED 300
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D
Sbjct: 463 -------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKD 513

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDG 359
           + ++  ++++ ++      +     +        +     +NM      G++ +   ++ 
Sbjct: 514 MEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNE 573

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL E+   R E   +R     + +   VE     +     I E    + N  KP+  ++ 
Sbjct: 574 ILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQ 631

Query: 420 R---------------FSLTEN---QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
                           +  +E      + +L +R+ SL K    ++  +      E E +
Sbjct: 632 ELENLGFPRFNKEGKPYYGSEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENL 691

Query: 462 DSLLNSGKQQWN 473
             L  S K  WN
Sbjct: 692 LKL--SAKDIWN 701


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 191/491 (38%), Gaps = 56/491 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T V+ +V  +     + +  + ++++    R+IP + DGFKP  R+++    +  L 
Sbjct: 729  EPGTYVDYDVDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNLR 787

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+ S+   +V +AQ F       L+S  G FG   + G
Sbjct: 788  AELKVAQLAGYVSE--HSAYHHGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGG 845

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + Q+  LI   +D D + +  + + +  EP  +    P +L NG+ GI
Sbjct: 846  KDAASARYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGI 904

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++S+P++N  +I +    +     I+ E++          TG I+         S 
Sbjct: 905  GTGWSSSVPNYNPLDIIKGLRQM-----INGEEIAPLTPWYRGFTGHIV-----EKANSR 954

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G + V+  + V +       +VV+E+P +       + +  L+ A  I   ++   
Sbjct: 955  GTDTGNYIVQGLYEVTDDS----TLVVSELPVKSWTQTYKQFLEGLLDAGTIKDFKENHT 1010

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGIL 361
            +      I + PK  S D       I     +E+    +   L      + +      I+
Sbjct: 1011 DVKVLFTITMEPKALS-DVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIM 1069

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
             E+   R E   RR    +Q +  ++++L       L + E   ++ N  K + ++    
Sbjct: 1070 AEFYGIRLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRKK-QELLEELM 1128

Query: 422  SLTENQ------------------------------VDAILNLRLRSLRKLEEYQIKSEL 451
            +   +Q                               D +L++++ SL K    ++++EL
Sbjct: 1129 AEGYDQIVSKTKKKPDNEDSNESEDEEPNVADVSRGYDYLLSMKIWSLTKERVDKLRAEL 1188

Query: 452  DNLLAEKEKID 462
                 E   ++
Sbjct: 1189 QEREHEYSVLE 1199


>gi|255022892|ref|ZP_05294878.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-208]
          Length = 303

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 128/284 (45%), Gaps = 13/284 (4%)

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              +     +  + + ++  +F  +D++  +  NM  ++    P++M +  +L  ++ H+
Sbjct: 22  GLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKK-RPELMGIIPMLDAYIEHQ 80

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425
           +E++ +RS + ++    R  IL+GL+ A   +DE+I +IR        K  + + +  +E
Sbjct: 81  KEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTNYDFSE 140

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            Q +AI++L+L  L   + ++++SE  +L  +   ++ +L    +    +  E+ E+K+ 
Sbjct: 141 KQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKK 200

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---A 542
           +  +      R T  +    +     + ++  E + V ++  G+++     S   S    
Sbjct: 201 YKTA------RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAE 254

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586
           L  KE D        ++ D +LL ++ G     P   L   R  
Sbjct: 255 LAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWK 298


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/159 (55%), Positives = 119/159 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SGI
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/462 (21%), Positives = 193/462 (41%), Gaps = 36/462 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L+  ++   L+YA+ T++ RAIP++ DGFKPVHR ++    ++       F K A I G
Sbjct: 7   DLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASIAG 66

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ S  ++   L   +   YP+  GQGNFG+     A++ RY  AR+++  
Sbjct: 67  GVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSKNF 126

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             + +  +   V      +EE   P  +    P +L N TSGIAVG AT I  H+ Q++ 
Sbjct: 127 YNLFKDTEYAPVH----PDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQDVK 182

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           EA  A+++      E +   +  P+F   G +VE  E          G + +   + +  
Sbjct: 183 EAVKAIVEG----REPVAPKVKYPEFR--GEVVELEE---------PGKYELHGTYKM-- 225

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRS 319
                  + +TEIP Q    +   KI + +  K     +D   E     +I         
Sbjct: 226 --TSRTQMEITEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGFGFKIKFRKEYKLD 283

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              +   E I     +  +   N+ VL+   ++ +      ++++++  R+  +  R   
Sbjct: 284 GTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTYVQVRIDS 343

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE---NQVDAILNLR 435
           +++  +   ++ +  +     + +   +I+   KP+  ++     +E   +  + ++ + 
Sbjct: 344 KIKETEAAFKLARAKVFFIKEVIDGKVVIQG--KPRKKLIEELQASEIYGDYAEKLVAMN 401

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKID------SLLNSGKQQ 471
           +  +   E  ++  E     AE E           LN  +  
Sbjct: 402 IYHMTSDEAKKLADEAKAKKAEHEYWKTTDVKTEYLNDLEAL 443


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/492 (21%), Positives = 206/492 (41%), Gaps = 40/492 (8%)

Query: 6   ISNSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           + NSN   ++++         + +    Y+      RAIP   DG KPV RRI+ AM   
Sbjct: 1   MKNSNPPKLKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW-- 58

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
                         V  +    HPHGD+S+ D+L ++AQ F      PL+SG+G FG++ 
Sbjct: 59  -NSDARNRYTKTVKVAGLAMGYHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVL 117

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  + A+ RYTE +++   + +        +D+   Y+E + EP+ F  K P +L N   
Sbjct: 118 DPSAIASPRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQ 177

Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
           GIA G    IP H + +I ++               + Y+      +     +     V+
Sbjct: 178 GIATGFRCFIPGHRLADIVKSQ--------------INYLKTKKPLSLKPWYKDFNGEVK 223

Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                 G   +   +  +  G     + +T+ P    + ++I  + + I+ ++   L++ 
Sbjct: 224 MAETETGNITMSTTFAFKWEGD---ILYLTDSPMNWNREKVISLLDD-ILERKDSWLKEY 279

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            D S++  RI L  K         + ++F   D++T   L MNV++     +    + I+
Sbjct: 280 VDYSSQTFRIELQYKKGEKPSQKEIMALFNKEDIQT---LAMNVITYDGKLKNFKPEEII 336

Query: 362 KEWLAHRREVLFRRSS----FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           K +   R+  L RR         + I+R  E+++   I     +++I I   +D    + 
Sbjct: 337 KRFCDFRKTHLIRRFKRLSGLEEEKIERNSELIR--FIKEKWNEKVIGIKSKKDFEDKLK 394

Query: 418 VSRFSLTEN-QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            S+F   E      +  + +  ++K EE  I++          +   L+   K+  + + 
Sbjct: 395 ASKFKYFEWLSTIPVYRMTIEEVKKCEEAIIEA-----KTTLARYQGLVKEDKKLTDYMI 449

Query: 477 CEIREVKEIFSK 488
            E+ E++  + K
Sbjct: 450 TELNELQNKWDK 461


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/574 (16%), Positives = 203/574 (35%), Gaps = 72/574 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T +++    +  R  + +  + ++++   +R+IP + DG KP  R+I+    +  
Sbjct: 671  QFEPGTFLDDRDSHIKYRDFVHKELILFSIAD-VQRSIPSMVDGLKPGQRKILFCSFKRN 729

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
                A   + +  V E     + HG+QS+  +++ +AQ +       L+   G FG    
Sbjct: 730  FVREAKVAQFSGYVSE--HSAYHHGEQSLAGTIIGMAQDYVGSNNINLLLPIGQFGTRGQ 787

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   +++ V   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 788  GGKDHASARYVFTQLSPVTRFLFPKADDILLDYL-NEDGQSIEPTWYVPIIPMVLVNGSE 846

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N  +I      L+++                        +     VE
Sbjct: 847  GIGTGWSSYVPNYNPVDIIANIRHLLNDEATE--------------PMHPWYKGFLGSVE 892

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK---RIPLL 298
                   G        +EEV      + + E+P +       E +  +       + P +
Sbjct: 893  KTATKEAGASYTVSGIIEEVDD--TTLCIKELPIRRWTQDYKEFLESVSAENDKSKDPFI 950

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
            E  RD S  ++   L             E +     + T        L  S G + +   
Sbjct: 951  EGCRDYSGSELVNFLVGMKPEKLEAAKREGLLKKFKLTTSISTCNMHLFDSKGVIKKYDT 1010

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---- 412
             + IL+E+   R E+  +R    +  ++  +            + E   I+ N  +    
Sbjct: 1011 PEQILEEFFYIRLELYEKRKKVLLDILEHDMLKCDNKYRFIRCVVEGSIIVSNRKRTDVF 1070

Query: 413  -----------PKPVMVSR----------------------FSLTENQVDAILNLRLRSL 439
                       PK    +                         ++ +  D +L+L + +L
Sbjct: 1071 RELKEKGFTPFPKKKNRAEVAIAGATDDGEETEENSEVPIAPGVSSSDYDYLLSLAIGTL 1130

Query: 440  RKLEEYQIKSELDNLLAEKEKIDS------LLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
               +  ++++E D L+ E E++                 +++A E +  +E + K+    
Sbjct: 1131 TTEKMQELRAERDKLMQEVEELKQSTARSLWNKDLDALEDKLAEEQKIYEETWEKNKRKI 1190

Query: 494  RRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
              +T   E+ + +    ++   ++  + + IS  
Sbjct: 1191 HGKTDTLEIIQKNPRKNKKTTKKESAVEMEISEN 1224


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 120/163 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y +  I  RA+PD+RDG KPVHRR+++AM E+  D+  A+KKSARIVG+VIGK HPHGD 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RYPL+ GQGNFG++DGD+AAA RYTE RM ++A  +L  ++++ V
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           DF   Y+  + EP++ P+K PNLL NG   IAVG+   I  H 
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVGVGPPISRHK 163


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 130/264 (49%), Gaps = 20/264 (7%)

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ V+ R
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLTHRKTVIIR 59

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q +AI
Sbjct: 60  RTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQANAI 119

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F     
Sbjct: 120 LDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFDVP-- 177

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    ++         + +I  E + V I++RG+I+          K       A+
Sbjct: 178 ------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAV 231

Query: 544 HFKEGDSLKIALHAHTTDRILLLS 567
              + D ++    A+T D ++ ++
Sbjct: 232 TTYDDDFIESFFTANTHDTLMFVT 255


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/187 (50%), Positives = 129/187 (68%), Gaps = 1/187 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +VY+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM++++  IL+ + +D
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I +L+E I GPDFPT G I+  R  I  +   GRG    RA+  +E    G   I V
Sbjct: 121 DITIPELMEVIPGPDFPTAGQIL-GRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXV 179

Query: 271 TEIPYQV 277
           TE P  V
Sbjct: 180 TEFPXXV 186


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 132/198 (66%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++D Y+  + EPVV PS+FPNLL NG +GIA GMAT+IP H + E+ E  LA+ +
Sbjct: 1   KDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           NPEI+ ++L+EYI G DFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NPEITNQELMEYIPGRDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++ +
Sbjct: 120 IVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNN 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +N+  L
Sbjct: 180 LYKQTALQTSFGINLLAL 197


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 128/263 (48%), Gaps = 20/263 (7%)

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ 
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLIELLNLFLNHRKT 60

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427
           V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N       +  +V++F LTE Q
Sbjct: 61  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAKFGLTELQ 120

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++L  L  LE  +I++EL  L+ E  ++D +L S     N I  E++E++  F 
Sbjct: 121 ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKFD 180

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                        ++         + +I  E + V I++RG+I+          K     
Sbjct: 181 VP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKG 232

Query: 540 LSALHFKEGDSLKIALHAHTTDR 562
             A+   + D ++    A+T D 
Sbjct: 233 KLAVTTYDDDFIESFFTANTHDT 255


>gi|294626547|ref|ZP_06705145.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599114|gb|EFF43253.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 260

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 7/250 (2%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565
            +A  +  M+  EP+TVV+S +GW+R+ K H VD + + +++GD L  A+ + +T ++  
Sbjct: 6   AQAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLTAVRSRSTHQVAF 65

Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625
           L +DG+AY+     L S RG+GE +                  D+  + ++ SS G  F+
Sbjct: 66  LDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVLASSHGYGFV 125

Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMS 682
                +    + GK  L +++   +    +V+    D +  V     LL      +PE+ 
Sbjct: 126 TRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELD 185

Query: 683 RGKGVRLQSY---KDGGISDVICFKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGS 738
           +GKG ++      K G    V    +  G T +  +G R+ + S  DL  ++G R   GS
Sbjct: 186 KGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTYVGARASRGS 245

Query: 739 LVPKGFPRSG 748
           L+P+G+ +  
Sbjct: 246 LLPRGWQKVD 255


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           VV P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNP+ +   ++E
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIME 174


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV 
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV 
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|313621653|gb|EFR92449.1| DNA gyrase subunit A [Listeria innocua FSL S4-378]
          Length = 327

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 10/231 (4%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHG 587
            RS +     +  +   E D ++  +   T D +L  +  GK Y      +        G
Sbjct: 9   YRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKG 68

Query: 588 EAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
             I  L+ +   + +        +     L   +  G       S+     + G   +++
Sbjct: 69  IPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVEL 128

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V    G  ++ +  ++ + + F  + I  M R   GVR    ++    +VI 
Sbjct: 129 RENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRGIRLRED--DEVIG 186

Query: 703 FKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
            ++ E     +    + Y +        L  RGG+G        ++G  ++
Sbjct: 187 MEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 237



 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 77  IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 136

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 137 VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 195

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 196 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 255

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 256 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 289



 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 71  IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 129

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 130 ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 188

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 189 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 248

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 249 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 291


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/202 (45%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   
Sbjct: 120 VRAKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 312 VLFPKNRSLDPDLLMESIFMLS 333
           V+    R    ++++ ++F  +
Sbjct: 179 VVIELKRDAMSEIVLNNLFKST 200


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/654 (17%), Positives = 248/654 (37%), Gaps = 78/654 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K+++    + +  + ++++    R+IP + DG KP  R++I+A  +  L  
Sbjct: 769  PGTFLDHSTKSITYTDFVNKELILFSMADNM-RSIPSVVDGLKPGQRKVIYACFKRNLVK 827

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  + E     + HG+ S+  +++ LAQ F        +   GNFG+    G 
Sbjct: 828  DQKVVELAGYISEQTS--YHHGEVSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGS 885

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  I   +DE  ++ +   + +  EP V+    P +L NG  GI 
Sbjct: 886  DAASPRYIHTRLSPFARKIFSPLDEPNLEPQY-EDGKRIEPKVYAPIIPMILCNGADGIG 944

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+++  +I       +   + S  +   +         G      +S  + Y+
Sbjct: 945  TGWSTSIPNYHPIDIVNNLKRRMGRLDPSNPEDAAFQPMM-PWFRGWKGTPEQSEKDRYK 1003

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
                         + E+   +  ++VTE+P ++       K+ E+I   + P  ++D ++
Sbjct: 1004 FN----------GICEIDERTGEVIVTELPIRMWTDDFKAKLEEVISGTKGPVWIKDYKE 1053

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
             +       +   +     D+L + +     +  +   +  V   + G++ +   ++ IL
Sbjct: 1054 FNDHKNVHFVIQMDDKHTKDILADGLLERFKLSKQIATSNLVAFDTRGQIRKYEKVEDIL 1113

Query: 362  KEWLAHRREVLFRRSSFRM-----------QAIDRRVEILKGLLIAYLN----IDEIIAI 406
            +E+  +R ++  +R    +           +      EI++G L+        + E +A 
Sbjct: 1114 EEFYNYRLDMYAQRKKHWLGVYHSDFRKLSEQARFIREIIEGKLVVAKKRKQVLVEELAK 1173

Query: 407  IRNEDKPKPVMVSRFSLT------------------ENQVDAILNLRLRSLR--KLEE-- 444
             + E  PK    +    +                   N  D +L++ + SL   +LE   
Sbjct: 1174 RKYEAFPKNKDKNVKKKSTDEDMEGNDEDEEDTDEQTNGYDYLLSMPIWSLTYERLERLE 1233

Query: 445  ---YQIKSELDNLLA------EKEKIDSLLNSGKQQWNQ---IACEIREVKEIFSKSTDL 492
                  K+E D LLA        + +D  +   + Q      I   IR +    SK    
Sbjct: 1234 RQIENKKAEHDALLALGEKDLWIQDLDDFVAEWENQMALDAEIQTNIRRLGRRVSKKIGA 1293

Query: 493  GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            G+ R    +         ++A  + +     ++ +   R       D + +  K+ ++  
Sbjct: 1294 GKGRKAKKDDDDYAPGEKKRAGAKAKAAP-KVTEKAAERFAAM--FDKAKVKPKKEEAES 1350

Query: 553  IALHAHTTDRILLLSTDGKAYTL-PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
             A    + D    L   G A  + P+          +     +  + ++D  + 
Sbjct: 1351 DAF---SDDDFAALGRKGAAKPVAPSETRPRAAATKKKPIYTLSDSDDEDFASL 1401


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 100/537 (18%), Positives = 199/537 (37%), Gaps = 73/537 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 717  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 775

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +      E     + HG+ S+  ++V LAQ F       ++S  G FG     G
Sbjct: 776  AEIKVAQLGGYCSE--HSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRASGG 833

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+SGI
Sbjct: 834  KDAASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSSGI 892

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N  +I       + N  +           P F         R    +  
Sbjct: 893  GTGWSSDIPNYNPVDIVNNLRRRLANEPMEPM-------HPWF---------RGFTGQIT 936

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA-KRIPLL---- 298
                G ++V   W   +       I +TE+P +V      E+I   I +  +IP L    
Sbjct: 937  SEAPGKYKVLGEWDQPDED----TIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKDY 992

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             +   E+     I L  + +       +E +F LS         +     G++ +    +
Sbjct: 993  REYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSAN-LSITNMVCFDPSGKIKKYSTPE 1051

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL ++   R     +R  + +  +    E L       L I E   ++ N  K + V  
Sbjct: 1052 QILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIEKKLVVSNRKKAEIVAE 1111

Query: 419  SR--------------FSLTENQV----------------------DAILNLRLRSLRKL 442
             R               +   +Q                       D +L + +  L   
Sbjct: 1112 LRKLEFRPFPVKAKPKTAGDPDQADEEGVEEEEVADLKAAGTAGDFDYLLGMAISRLTAE 1171

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +  ++ +E D+   +++++  LL    +       ++ E +     ++D   RR + 
Sbjct: 1172 QVAKLLAERDD---KEKELQILLEKTAEDLWHADLDLFEQEWRRIMTSDNDSRRASI 1225


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 86/151 (56%), Positives = 116/151 (76%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           VYD++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 172/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 642  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 700

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  VRRDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 758

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 759  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 817

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 818  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 860

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 861  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 916

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  V+  + + +   L          ++     NM       R+ +    +
Sbjct: 917  YKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 976

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 977  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1031


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 172/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 643  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 701

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 702  VRRDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 759

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 760  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 818

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 819  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 861

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 862  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 917

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  V+  + + +   L          ++     NM       R+ +    +
Sbjct: 918  YKDYNTHTNVHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 977

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 978  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1032


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VD+ D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIME 174


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 92/544 (16%), Positives = 191/544 (35%), Gaps = 83/544 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 708  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC 766

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 767  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 824

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 825  SAARYIFTKLASCTRSIFNEYDDPILKYL-NEEGQKIEPKYYIPVIPTILVNGCEGIGTG 883

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I E          I+ E L+  I                     Y+  
Sbjct: 884  YSSFIPNYNYKDIIENIKRY-----INKEPLIPMIP-------------------WYKDF 919

Query: 247  RGGFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G         + + E+P +       E + EL+  ++  L+ D  
Sbjct: 920  KGRIESNGKTGFETIGIIRKIDDETLEINELPIKKWTQDYKEFLEELLTDEKNQLILDYI 979

Query: 303  DESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            D S+ +     I + P       +  +E +F L    T   + +   ++  + +      
Sbjct: 980  DNSSHEEICFTIKMDPAKLRKAEEEGLEKVFKLKSTLTTTNMTLFDYNLK-LQKYATELD 1038

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI------------------- 400
            ILKE+   R      R S+ +  +++  +I+       L I                   
Sbjct: 1039 ILKEFCFQRLNAYENRKSYLIAKLEKEKKIISNKSKFILAIVNNELVVNKKKKKVLVEEL 1098

Query: 401  ----------------DEII--AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
                            +EI    ++   D P+        ++    D +L++ + SL   
Sbjct: 1099 YRKGYDPYKDINKIKKEEIFEQELLEAADNPEDNEEIIAGISVKDYDYLLSMPIFSLTLE 1158

Query: 443  EEYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            +  ++ ++      E E + ++      L   ++    I  +         +S      R
Sbjct: 1159 KVEELIAQHKEKEKELEILRNITVETMWLKDIEKVEEAIEFQRNVELANREESNKFKVAR 1218

Query: 497  TTFC 500
                
Sbjct: 1219 KQIA 1222


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 118/158 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y ++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 119/158 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 87/518 (16%), Positives = 181/518 (34%), Gaps = 80/518 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 708  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC 766

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     H HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 767  KVAQLVGYIAEHSA-YHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 825

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 826  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 884

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I +          I+ E L+  +                     Y+  
Sbjct: 885  YSSFIPNYNYKDIIDNIKRY-----INKEPLIPMVP-------------------WYKDF 920

Query: 247  RGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G      +  + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 921  KGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYI 980

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGI 360
            D S+ +        + +       E +  +  +++        L    +   +      I
Sbjct: 981  DNSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDI 1040

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------- 409
            LKE+   R +    R S+ +  +++   I+       L I     I+             
Sbjct: 1041 LKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELY 1100

Query: 410  --------------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                       D P+        +T    D +L++ + SL   +
Sbjct: 1101 RKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEK 1160

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
               + ++L     E E + ++      L   ++    I
Sbjct: 1161 VEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAI 1198


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
          Length = 1677

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 193/509 (37%), Gaps = 66/509 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K++S    +    + ++++    R+IP + DGFKP  R++++A  +  L  
Sbjct: 770  PGTYLDHSTKSISYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVLYACFKRNLVK 828

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E     + HG+ S+  +++ LAQ F        +   GNFG+    G 
Sbjct: 829  DKKVVELSGYVSEQTA--YHHGEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGS 886

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RYT  R++  A  I   +DE  +  +   + +  EPV +    P +L NG  GI 
Sbjct: 887  DAASPRYTFTRLSPFARKIFSPMDEPNLQHQH-EDGKKIEPVAYAPIIPMVLVNGADGIG 945

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY-IIGPDFPTGGIIVESRESIVESY 243
             G +TSIP+++ ++I       +   +    + L +  + P F       E         
Sbjct: 946  TGWSTSIPNYHPEDIVRNLKRRMGRLDEKDGEELPFETMMPWFRGWKGQPE--------- 996

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLE 299
                G  R +     ++  R    I ++E+P +V       ++ ++I        I   +
Sbjct: 997  --AAGPDRYKFNGIAQQNERNPNEITISELPIRVWTDDFKARLEKIISGNDGPAWIKDYK 1054

Query: 300  DIRDESAEDVRIVLFPK-NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPL 357
            +  D S     +++  K    +  + ++E   +L  + T    N+       ++ +   +
Sbjct: 1055 EFNDHSVVHFEVMMDEKHTEKVLEEGILERFKLLKQVATS---NLVAFDSRGQIRKYEKV 1111

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------- 409
            + IL+E+  +R ++   R  + +         LK        I +   I+          
Sbjct: 1112 EDILEEYYHYRFDMYTERKKYWLGVYHADYRKLKNQARFIKEIIDGELIVGKKKKTVLVQ 1171

Query: 410  -------------EDKPKPVMVSRFSLTE------------NQVDAILNLRLRSLRKLEE 444
                          DK K          +               D +L++ + SL     
Sbjct: 1172 ELRDRKYEAFPRGSDKKKTADEEEDDADDNQDADADMDGGARDYDYLLSMPIWSLTA--- 1228

Query: 445  YQIKSELDNLLAEKEKIDSLLN-SGKQQW 472
             +++     +  +K + D LL  S K  W
Sbjct: 1229 ERLEKLKAAIEKKKAEHDDLLALSEKDLW 1257


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 91/506 (17%), Positives = 190/506 (37%), Gaps = 64/506 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  K V     + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 659  PGTYIDQQEKRVRYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFVK 717

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
             A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG     G 
Sbjct: 718  EAKVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINLMFPGGQFGTRAQGGK 775

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   +++ +   I    D+  +++    + +  EP  +    P +L NG+ GI 
Sbjct: 776  DAASPRYIFTKLSHITRSIFPKDDDILLNYL-NEDGQSIEPTWYMPILPMVLVNGSEGIG 834

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      L++                  P        + SI ++  
Sbjct: 835  TGWSTFIPNYNPRDIVANLRRLLNEEST-------------VPMHPWYRGFKGSIEKTVN 881

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---IIAKRIPLLEDI 301
                G        +E V      + +TE+P +       E +  L       ++P +ED+
Sbjct: 882  TKVVGSTYTVTGIIEVVDNSR--LRITELPIRRWTGDYKEFLESLGPDKNKDKVPFIEDV 939

Query: 302  R---DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
                D     + I L   N ++  +  +   F L+       +++   S G++ +    +
Sbjct: 940  TAQGDNEDIYIEIQLSEGNMNIAKEEGLVKKFKLTTTIGTSNMHLFD-SNGKIRKYDTPE 998

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------- 411
             IL+E+   R E   +R    ++ I   ++ L+  +     + +   I+ N         
Sbjct: 999  QILEEFFQLRLEFYVKRKEALLKNIKLELKKLENKVRFIRCVVDNEIIVNNRKRADLFLE 1058

Query: 412  ------KPKPVMVSRFSLTEN-------------------QVDAILNLRLRSLRKLEEYQ 446
                   P P    R                           + +L + + +L   +  +
Sbjct: 1059 LRQKNFDPFPKKKKRAEPAAAGALEEENEENPEAEAAEPSDYEYLLAMPIGTLTLEKIQE 1118

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQW 472
            + +E   L+ + E++ +   S K  W
Sbjct: 1119 LIAEKQKLVDDVEELKN--TSPKSLW 1142


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 132/174 (75%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ VDF D Y+  + EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
           +V P++FPNLL NG +GIAVGMAT+IP HN+ E  +A   ++DNPE +   ++E
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIME 174


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 100/526 (19%), Positives = 201/526 (38%), Gaps = 66/526 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 798  PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 856

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 857  EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 914

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    + ++   I   +D+   ++    +E+  EP  +    P +L NG  GI 
Sbjct: 915  DFSAARYIFTELNEITRKIFNPLDDPLYNYVQ-DDEQTVEPEWYLPVLPMILVNGAEGIG 973

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS+N +++      L++      E+L E         G I     +       
Sbjct: 974  TGWSTNIPSYNPKDLVANIKRLMNG-----EELQEMTPWYKGWDGDIEQSGPQ------- 1021

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
                  + +    +E+VG     + +TE+P +V  +   E +      ++ P  ++D+ +
Sbjct: 1022 ------KYKITGRIEQVGDNE--VDITELPVKVWTNNYKEFLLAGFGTEKTPAWIKDMEE 1073

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILK 362
                 ++ V+   +  +   L M  +     + +    NM       R+ +   +  ILK
Sbjct: 1074 HHTTSIKFVVKLTDAEMQKSLRMGLMERFKLISSLSLGNMVAFDSMGRIKKYTDVLEILK 1133

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNEDKP-----KPV 416
            E+   R E   +R S+ +  +   +  + +      L ID+ ++I   + K         
Sbjct: 1134 EFYYLRLEYYEKRKSYMVDKLQSELITLSEKARFVKLIIDKKLSISNKKKKDLISELIAN 1193

Query: 417  MVSRFSLTENQVDA--------------------------ILNLRLRSLRKLEEYQIKSE 450
               +      Q DA                          +L++ L SL        +  
Sbjct: 1194 NFKKLKANGEQQDASSLDGDDDEVEGEDDNGNSSGSGYNYLLSMSLWSLT---REHFERL 1250

Query: 451  LDNLLAEKEKIDSLLNSGK-QQWNQIACEIREVKEIFSKSTDLGRR 495
            L     ++E+++ LL       W     E  E  E F K  +  R 
Sbjct: 1251 LQQRDQKEEELNVLLGKTATNLWEADLDEFMEAYEAFLKKDEEERE 1296


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 138/201 (68%), Gaps = 2/201 (0%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           EARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H++ E+ +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +V
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKV 119

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           RA+  +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V
Sbjct: 120 RAKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRV 178

Query: 313 LFPKNRSLDPDLLMESIFMLS 333
           +    R    ++++ ++F  +
Sbjct: 179 VIELKRDAMSEIVLNNLFKST 199


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D +V +S VR+AQ F     L+ G GNFG +DGDSAAA RY EARM ++A  IL+ + +D
Sbjct: 1   DFAVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +D++D Y+  + EPVV PS+FPNLL NG +GIAVGMAT+IP H + EI +  LA+ +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270
           +I+I++L+E I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I+V
Sbjct: 121 DITIQELMELIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 179

Query: 271 TEIPYQVQKS 280
           TE+PYQV K+
Sbjct: 180 TELPYQVNKA 189


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 186/416 (44%), Gaps = 28/416 (6%)

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           ME  +      +   R P ++ L   L   + H  +V+ +   + +  +  R+EI++GL+
Sbjct: 1   MEISYNTKFIAIV-HRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLI 59

Query: 395 IAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                IDEII IIR  D     K  ++  F+ T NQ +AI+ +RL +L + + + +++E 
Sbjct: 60  KCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEW 119

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           ++L  + + +   + S + + N +  ++ E K+ F      G +R T            +
Sbjct: 120 ESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF------GYQRKTKLFDEFIKAEVNE 173

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHAHTTDRILLLST 568
             MIEK+ + +VIS  G+I+++   S + S    L  K  D L      ++ DRIL++++
Sbjct: 174 DQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELGLKTNDLLFYHNVINSHDRILIITS 233

Query: 569 DGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD-----STCKLLVVSSKG 621
             K   L A  +  +  +  GE +      + N+ +V  +V +        +L++ S   
Sbjct: 234 KAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLVLGSKLN 293

Query: 622 NAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQ 677
               +E +E+ +    K  + +K++  + +     +  DH   V  + +   +L+F + +
Sbjct: 294 LIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHE 353

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW---IDSAGRSYNRSENDLLGW 729
           I  ++R  KG+++   K       I      G +    +D   + ++ SE  L   
Sbjct: 354 INCLNRLAKGIKIMKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKR 409


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 642  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 700

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 701  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 758

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 759  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 817

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 818  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 860

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 861  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 916

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 917  YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 976

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 977  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1031


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/176 (49%), Positives = 125/176 (71%), Gaps = 1/176 (0%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
           R   E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+GL   A +KKSAR VG+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTEA++++ A+
Sbjct: 61  LGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++L  + +  V+++  ++    EP + P++ P++L NG +GIAVGMAT IP HNV 
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/518 (16%), Positives = 192/518 (37%), Gaps = 68/518 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     +     + +  + ++++    R+IP + DG KP  R+I+    +    
Sbjct: 665  EPGTFLDMTADKIKYSDFVNKELILFSMAD-LARSIPSMVDGLKPGQRKILFCCFKRNFV 723

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
              A   + +  V E     + HG+ S+  +++ +AQ F       L+S +G FG     G
Sbjct: 724  TQAKVAQFSGYVSE--HSAYHHGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGG 781

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             + A+ RY    +  +   +    D+  +D+    + +  EP  +    P +L NG+ GI
Sbjct: 782  KNHASPRYIFTCLAPITRALFPQPDDVLLDYMK-EDGQSIEPSWYCPIIPLVLVNGSEGI 840

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ +P++N +EI      L+        +L           G I   + + I  +Y
Sbjct: 841  GTGWSSFVPNYNPREIVANIRRLLAGQ-----ELTPMHPWYKSFMGTIECSATKDIGLTY 895

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLED 300
             +            +E++      I + E+P +       E +  L+      + P ++D
Sbjct: 896  TI---------TGTIEQID--ETTIKILELPVRKWTQDYKEFLDALMTPSDKNKEPFIKD 944

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
             R+ + +         +       L E +     + T    +   L  + G + +    +
Sbjct: 945  FREHNTDTKVHFELTLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDAKGIIKKYDTPE 1004

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------- 409
             IL+E+   R ++  +R + ++Q +   +  +   +   L + +   I+ N         
Sbjct: 1005 QILEEFFHIRLDLYVKRKAVQLQNLQYELVKVDNKVRFILGVVKGEIIVNNRKRIDLLSE 1064

Query: 410  ------------EDKPKPVMVSRFSLTEN-------------QVDAILNLRLRSLRKLEE 444
                           P P +V    L E+               D +L++ + SL   + 
Sbjct: 1065 LQHKGFAPFPKKAKSPDPPVVGADPLPEDNEQDEKVKGVKVADYDYLLSMPIGSLTYEKV 1124

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             Q++ + D +  E E++     + +  W     ++ E 
Sbjct: 1125 QQLRGQRDKMEEEVEELKR--ATPEALW---IKDLDEF 1157


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 10/223 (4%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            R R+   E     KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K
Sbjct: 3   RRCRSPLREREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 61

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
            A+   +   ++ + T G++Y +    L S RG GE +   + L     +    +     
Sbjct: 62  AAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQ 121

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKL 670
           KLL+ S  G  F+   ++++A  R GKT + +     +   + +  +H  +  + +  ++
Sbjct: 122 KLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRM 181

Query: 671 LIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKIC 706
           L+F +D +P++S+GKG ++ +         D G++ +      
Sbjct: 182 LMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPT 224


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 194/485 (40%), Gaps = 29/485 (5%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S      EE          + +    Y+      RAIP   DG KPV RRI+ AM    
Sbjct: 1   MSFGTMKNEEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMW--- 57

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI-D 122
                        V  +    HPHGD+S+ D+L ++AQ F     YPL+ G+G FG++ D
Sbjct: 58  NSDARNRHTKTVKVAGLAMGYHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLD 117

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            ++ A+ RYTE +++  A+ +        +D+   Y+E + EP+ F  K P +L N   G
Sbjct: 118 PNAIASPRYTEVKLSDFAKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQG 177

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           IA G    IP+H + ++ E+ +               Y+            +     V+ 
Sbjct: 178 IATGFRCFIPAHKLSDVIESQVT--------------YLKTGKPKKITPWYKGYGGEVKL 223

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +   G   +   +  ++       + + + P    + +++  + +LI  ++   L+D  
Sbjct: 224 SKNDNGNTVMSTTFGFKKEDGK---LYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYV 279

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           D S++  +I L  K      +  ++ +F   + E    L +NV++     +    + I+K
Sbjct: 280 DHSSQTFKIELIAKKGEEPSEKEIKELFTKENNEV---LTINVITHEGKLRNFGPEEIIK 336

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            +   R+  L RR   R+  +++  +I +   +     +     +      K       +
Sbjct: 337 RFCDFRKTHLIRRFK-RLAGLEKE-KIDRNSELIRFIKERWNEKVTGIKSKKEFEDKLKA 394

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
                 + + ++ +  +   E  + +  +     +  +  +L    K+    +  E+ E+
Sbjct: 395 AKFVYFEWLSSIPVYRMTLEEVRKCEDAIVEAKTKYTEYTTLQKDDKKLTGFMTDELDEL 454

Query: 483 KEIFS 487
           K+ + 
Sbjct: 455 KKKWD 459


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVSGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGELVISKKKKA 1029


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/170 (55%), Positives = 126/170 (74%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           +++ V +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KS
Sbjct: 1   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+
Sbjct: 61  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 120

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAV
Sbjct: 121 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
          Length = 1058

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 188/464 (40%), Gaps = 45/464 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++++   + +   +++  + ++     ER+IP + DG KP  R+I+ A  +  L  
Sbjct: 615  PGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLVQ 673

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E+ G  + HG+QS+  ++V +AQ +       L+   G FG+    G 
Sbjct: 674  EIKVAQFSGYVSEISG--YHHGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLGGK 731

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY   +++ V   +    D+  + + +  +    EP  +    P LL NG +GI 
Sbjct: 732  DSASARYIFTKLSPVTRQVFNQADDVLLKYLE-DDGSSIEPEWYVPAIPFLLVNGANGIG 790

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IPS+N ++I +    LI   E+              P      E   SIV++  
Sbjct: 791  TGFSTDIPSYNPKDIIDNVKRLISGKEM-------------VPMSPWYKEFTGSIVQN-- 835

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
               G F  +    V         +VV+E+P     S   + +  L+  K I    +   E
Sbjct: 836  -DNGTFTCKGVAKVSGKN-----VVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREKHTE 889

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFM--LSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                   VLF  + S +PD+ +  +     +     F          ++ +      I++
Sbjct: 890  KN-----VLFEIDYSGEPDISILKLEKVIRTTNMHAFDPQG------KIKKYACSLDIIR 938

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKG---LLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +W   R+    +R ++ ++ +  +  I +     +   +N + +++          +   
Sbjct: 939  DWFEVRKTFYTKRKAYLIKDLSHKAAIAENKHRFITLIVNDELVLSKKTESVILSELRTL 998

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            +F  ++     +L++ + SL      +++ E + L  E   +++
Sbjct: 999  KFYKSDGSYKYLLDMSISSLTLERAEKLRLEAEKLKKELTILEN 1042


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 211/530 (39%), Gaps = 46/530 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M  D ++ S   V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I+ A
Sbjct: 769  MAAD-MTQS---VDHSIKELSYSDFINKELVHYSWAA-NHRSIPSVMDGLKPGQRKILFA 823

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF 118
              +  L       + +  V E     + HG+QS+  ++V++AQ F      PLIS  G F
Sbjct: 824  CFKRNLTHEIKVAQLSGYVAEHTA--YHHGEQSLSSTIVKMAQDFVGSNNIPLISQGGQF 881

Query: 119  GN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G   + GD +A+ RY   ++ Q+  LI   +DE++++F +    E  +P  +    P +L
Sbjct: 882  GTRLMGGDDSASPRYIFTKLNQITRLIYNDLDEESLNFLE-EEGESIQPSYYIPIIPMIL 940

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+SGI VGM+ S+P ++  ++ E  L  + N      ++ + I       G I++  +
Sbjct: 941  VNGSSGIGVGMSNSVPLYSPIDLIEYLLLKLSNQR----QMKKLIPWYRGFKGNIVISGK 996

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                         F+      +     G   + + EIP     S   + + +LI    I 
Sbjct: 997  ------------SFKTSGLIKI----TGRNSLSIREIPIGKWTSDYKQVLNDLIEQDIIK 1040

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVM 355
               +   E+  +  +    +      +     +  L  + +    N+ + +  G V +  
Sbjct: 1041 SFTEENTENTVNFTVSTTYEQMERLEESTENELLSLFKLTSLVHPNLTLFAPDGTVKKYE 1100

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-------- 407
             ++ I+ E+   R +   +R    M+ + ++++  K  +     I      I        
Sbjct: 1101 SVEEIVDEFYGVRLDAYVKRRENIMKKLQQQIDKHKVTINFIQLIASGKVKIGGVSKDNV 1160

Query: 408  RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              + + K   +      E     + NL +  + + +   + +       E   I +    
Sbjct: 1161 IKDLEAKGFHLEGNQQPEETFTYLFNLPILEMTQEKITTLTNLYTKKTEEFNAIQAQTAD 1220

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 N    ++ ++++   K     R +       ++ K T +Q  +++
Sbjct: 1221 -----NLWKTDLLQLRDALLKDASYKREKEVVEIAPKSRKRTTKQDDVDE 1265


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 168/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L E +     +  +   +  V      R+ +    +
Sbjct: 915  YKDYNTHTDVHFIIQMDEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 171/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMVG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 122/519 (23%), Positives = 212/519 (40%), Gaps = 59/519 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP V  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LFPDFPSGGTMDASD------YQAGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTE-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 V-------KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                   K   +K  DL   R +  + ++   A  Q+ 
Sbjct: 450 TYRQLGHRKTKIAKFDDLPTERVSAHKKAKELAALDQEE 488


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 165/405 (40%), Gaps = 26/405 (6%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++    R+IP + DG KP  R++I A  +  L  
Sbjct: 782  PGTFLDHSTKQITYSDFVNKELILFSMADNM-RSIPSMIDGLKPGQRKVIFACFKQNLVK 840

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  +++ LAQ +        +   GNFG+    G 
Sbjct: 841  DKKVVELAGYVSEKAA--YHHGEASLQQTIIGLAQNYVGSNNVNCLEPSGNFGSRLQGGS 898

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  +   +DE  +  +   + +  EP V+    P +L NG  GI 
Sbjct: 899  DAASARYIHTRLSPFARRVFNPLDEPVLQHQ-VDDGKAIEPKVYAPVIPMVLVNGADGIG 957

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+++ +EI       +   ++  E+        +F          +   E   
Sbjct: 958  TGWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQ--------EFEPMTPWWRGWKGTPEPED 1009

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLED 300
              R  F+      +    +    +V+TE+P ++       ++ E+I A++    I   ++
Sbjct: 1010 ASRIRFKFNGIANL--DDKNPNEVVITELPIRMWTDDFKARLEEIIRAEKTPSWIKDYKE 1067

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDG 359
              D       I L  K+     D     +      +     N+    + G++ +   ++ 
Sbjct: 1068 FNDHKNVHFIIQLDEKHMKEFRDSPNLLLERFKLQKNVAITNLVAFDTNGQIRKYDKVED 1127

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            IL+E+  +R  V   R +  ++  D      + L   Y  I EII
Sbjct: 1128 ILEEFYHYRLNVYAARKAHWLRVFDAD---YRKLTNQYRFISEII 1169


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 121/519 (23%), Positives = 211/519 (40%), Gaps = 59/519 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPSGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTE-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLECLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 V-------KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                   K   +K  DL   R +  + ++   A  Q+ 
Sbjct: 450 TYRQLGHRKTKIAKFDDLPTERVSAHKKAKELAALDQEE 488


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 128/268 (47%), Gaps = 20/268 (7%)

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              R    ++++ ++F  + ME  F + M  ++    P+V  L  +LK +L HR+ V+ R
Sbjct: 1   ELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKE-PKVFSLLELLKLFLNHRKTVIIR 59

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431
           R+ F +Q    R  IL+GL IA  NID +I +I+        +  ++++F L+E Q +AI
Sbjct: 60  RTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAI 119

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L++RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F     
Sbjct: 120 LDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCP-- 177

Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSAL 543
                    ++         + +I  E + V I++RG+I+          K       A+
Sbjct: 178 ------RITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAV 231

Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGK 571
              + D ++      + D ++ ++  G+
Sbjct: 232 TTYDDDFIESFFTCMSHDTLMFVTDRGQ 259


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A 
Sbjct: 61  VMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/518 (15%), Positives = 192/518 (37%), Gaps = 68/518 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + ++ R  + +  + ++++    R+IP + DG KP  R+I+    +    
Sbjct: 664  EPGTFLDMTAEKINYRDFVNKELILFSMAD-LARSIPSMVDGLKPGQRKILFCCFKRNFV 722

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
              A   + +  V E     + HG+ S+  +++ +AQ F       L+S +G FG     G
Sbjct: 723  TQAKVAQFSGYVSE--HSAYHHGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGG 780

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             + A+ RY    +  +   +    D+  +D+    + +  EP  +    P +L NG+ GI
Sbjct: 781  KNHASPRYIFTCLAPITRALFPQADDVLLDYLK-EDGQSIEPTWYCPIIPLVLVNGSEGI 839

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ +P++N +EI      L+   E+                     +  +  +E  
Sbjct: 840  GTGWSSFVPNYNPREIVANLRRLLAGQEME--------------PMHPWYKGFKGSIECS 885

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLED 300
                 GF       ++++      I ++E+P +       E +  ++      + P ++D
Sbjct: 886  ATKDSGFTYTITGAIDQID--ETTIKISELPVRKWTQDYKEFLDVMMTPSDKNKEPFIKD 943

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
             R+ + +         +       L E +     + T    +   L  + G + +    +
Sbjct: 944  FREHNTDTKVHFELSLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDNKGIIKKYDTPE 1003

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------- 409
             IL+E+   R ++  +R + ++Q ++  +  +   +   L + +   I+ N         
Sbjct: 1004 QILEEFFHIRLDMYVKRKAVQLQNLEYELHKVDNKVRFILGVVKGEIIVNNRKRADLLAD 1063

Query: 410  --------------EDKPKPVMVSRFSLTENQ-----------VDAILNLRLRSLRKLEE 444
                             P  V        + Q            + +L++ + +L   + 
Sbjct: 1064 LQKKGFTPFPKKSKSSDPPVVGADPLPEDDEQDEKVKGIRAADYEYLLSMPIGTLTFEKV 1123

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             Q++ + D +  E E++     + +  W     ++ E 
Sbjct: 1124 QQLRGQRDKMEGEVEELKK--ATPEALW---IKDLDEF 1156


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 167/414 (40%), Gaps = 32/414 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ + + ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 641  QFKPGTYLDHSTEQITYSDFINKELILFSMADNI-RSIPSVIDGLKPGQRKVLYTMFKRN 699

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 700  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 757

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +T + +  EP  +    P +L NG  
Sbjct: 758  GGSDSASARYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGAD 816

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++      L+       E+L+          G            
Sbjct: 817  GIGTGWSTSIPNYNPEDVVANLKRLMAG-----EELVPMKPWFRGFKG------------ 859

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +++ E+I A ++P  ++D
Sbjct: 860  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDRLEEIIKADKVPSFIKD 915

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       L E +     +      +  V      R+ +    +
Sbjct: 916  YKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPE 975

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             IL+ + A R ++  RR    +  +  +++ L         I +   +I  + K
Sbjct: 976  DILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSNQARFVQMIIDGKLVISKKKK 1029


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 192/477 (40%), Gaps = 29/477 (6%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           EE          + +    Y+      RAIP   DG KPV RRI+ AM            
Sbjct: 4   EEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMW---NSDARNRH 60

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI-DGDSAAAYR 130
                V  +    HPHGD+S+ D+L ++AQ F     YPL+ G+G FG++ D ++ A+ R
Sbjct: 61  TKTVKVAGLAMGYHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASPR 120

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE +++  A+ +        +D+   Y+E + EP+ F  K P +L N   GIA G    
Sbjct: 121 YTEVKLSDFAKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFRCF 180

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP+H + ++ E+ +               Y+            +     V+  +   G  
Sbjct: 181 IPAHKLSDVIESQVT--------------YLKTGKPKKITPWYKGYGGEVKLSKNDNGNT 226

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +   +  ++       + + + P    + +++  + +LI  ++   L+D  D S++  +
Sbjct: 227 VMSTTFGFKKEDGK---LYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYVDHSSQTFK 282

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I L  K      +  ++ +F   + E    L +NV++     +    + I+K +   R+ 
Sbjct: 283 IELIAKKGEEPSEKEIKELFTKENNEV---LTINVITHEGKLRNFGPEEIIKRFCDFRKT 339

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            L RR   R+  +++  +I +   +     +     +      K       +      + 
Sbjct: 340 HLIRRFK-RLAGLEKE-KIDRNSELIRFIKERWNEKVTGIKSKKEFEDKLKAAKFVYFEW 397

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           + ++ +  +   E  + +  +     +  +  +L    K+    +  E+ E+K+ + 
Sbjct: 398 LSSIPVYRMTLEEVRKCEDAIVEAKTKYTEYTTLQKDDKKLTGFMTDELDELKKKWD 454


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 159/426 (37%), Gaps = 45/426 (10%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            +   G  P+ + L GILK +L  + E   R+ +  ++    + EI +GL+ A   ID I
Sbjct: 1   MLAIAGGRPETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLI 60

Query: 404 IAIIRNEDKPKPVMVSRFS---------------------LTENQVDAILNLRLRSLRKL 442
           IAI+R     K                              TE Q  AIL +RL  L  L
Sbjct: 61  IAILRGSKNLKDAKACLMEGDISNIHFKTPGFDEDARKLRFTEKQASAILEMRLYKLIGL 120

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E   ++ E    L + ++ + +L+S     + I  ++ E+K  F+        R T  E 
Sbjct: 121 EILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATP------RRTLIE- 173

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
               +A   +  +E   +  V+   G+ + +   + D +    +  +     +    TD+
Sbjct: 174 -DGKEAVYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQETIEGENP--HVIPCLNTDK 230

Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLV 616
           I L +  G  + + A ++  G  R  G  +  L   +        F+ +++     +LL 
Sbjct: 231 ICLFTDTGLLHQVKASDIPFGKMRDKGTPVDNLCKFD-GTKERPIFIINASALVGRRLLF 289

Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675
            + +    +V   E   N R      K+   + +  +    G     +   N   L F +
Sbjct: 290 ATKEAMVKLVPGEEFETNNR-MVAATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDL 348

Query: 676 DQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734
           ++I  + +  KGVR      G   + +     +    +    +  + +       +GKR 
Sbjct: 349 EEISTLKKNSKGVRGIKLGRGEELEQVYLLGTDSEQTVMYKEKQVHLNRL----KIGKRD 404

Query: 735 GVGSLV 740
           G GS V
Sbjct: 405 GKGSKV 410


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/521 (23%), Positives = 208/521 (39%), Gaps = 58/521 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTE-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                     LG R+T   +        +      KE  T+
Sbjct: 450 ------TYRQLGHRKTKIAKFDDLPTERISAHKKAKELATL 484


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 168/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDHITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++   G   + +TE+P +       +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQT--GDSEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +           L E +     +  +   +  V      R+ +    +
Sbjct: 915  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  R++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTRLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 192/526 (36%), Gaps = 50/526 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++++  +++R  + +  + ++++    R+IP + DG KP  R++I +  +  L 
Sbjct: 633  EPGTFLDQSMSNITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNLK 691

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +    V E     + HG+ S+  +++ LA  F       L+   G FG+    G
Sbjct: 692  TEIKVAQLVGYVSE--HSAYHHGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGG 749

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY    +  ++ LI    D   ++ +   +    EP  +    P +L NGT GI
Sbjct: 750  KDSASPRYIFTNLNPLSRLIFHEHDIPILESQ-IEDNLVIEPTYYVPIIPMVLVNGTDGI 808

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP+HN  ++ +    L++N     E+++ Y          I            
Sbjct: 809  GTGWSTNIPNHNPLDLIKNIKRLLNNQ--EPEEMIPYYRNYKGTITKI------------ 854

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G +    +   E + +    I V E+P  V      E + + I    I   +D   
Sbjct: 855  --NAGKYISCGKV-FENINKKE--INVVELPIGVWTQAYKEYLDQAIADNVIKSFKDYST 909

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGIL 361
            +   D+ I              M +    S + T    N  V       + +      IL
Sbjct: 910  DKTIDILIH-------------MNNNEFSSKLTTSISTNNMVCFDRNGKIKKYHNTLEIL 956

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            K++   R E   +R  +R++ +   +  LK  +     +     II      + ++    
Sbjct: 957  KDFYEVRLEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILELER 1016

Query: 422  SLT--ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS------LLNSGKQQWN 473
                  +  + +L++++ SL K +  +++ E +N   E  ++ +            +   
Sbjct: 1017 KEFTRYDNYEYLLDMKISSLTKEKINKLREEYNNKNIEYNELKNKSIKNLWFEDLDKFEK 1076

Query: 474  QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +    +      ++K      +  +   + +    T          
Sbjct: 1077 EYIKVMEAENIKYNKDNQKRYKHKSNEFIEKNILMTKMLKKNPNIN 1122


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 122/174 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 122/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/519 (23%), Positives = 210/519 (40%), Gaps = 59/519 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTE-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 V-------KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                   K   +K  DL   R +  + ++   A  Q+ 
Sbjct: 450 TYRQLGHRKTKIAKFDDLPTERVSAHKKAKELAALDQEE 488


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 207/576 (35%), Gaps = 88/576 (15%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            +    T+++  +  + +   + +  + ++L+    R+IP + DG KP  R++I+A  +  
Sbjct: 660  LYEPGTVLDPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRN 718

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       +    V E  G  + HG+QS+Y ++V LAQ F       L+   G FG    
Sbjct: 719  LKSEIKVAQLGGYVSEHTG--YHHGEQSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRAT 776

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +AA RY    + ++   I   +D+  +++    +E+  EP  +    P +L NGT 
Sbjct: 777  GGKDSAAPRYIFTELNKLTRKIFNTLDDPLLNYIQ-DDEQTVEPEWYLPVIPMVLVNGTE 835

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP  N  +I      L+       E++ +         G +          
Sbjct: 836  GIGTGWSTNIPPFNPMDIVNNVKRLMKG-----EEMEQMAPWYRGWQGSLE--------- 881

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLE 299
              ++    +R   R  +E++      + +TE+P +   S + E +   +    K  P ++
Sbjct: 882  --KIDPQKYRTYGR--IEQIDEN--TLEITELPPKTWTSVIKEHLLLGLSGNDKVKPWIK 935

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
            DI+++    ++ ++   +  ++    +        + T    NM      G++ +   + 
Sbjct: 936  DIQEQHGATIKFIITLTSDEMEKTRKIGFYERFKLVSTVSLSNMVAFDPQGKIKKYDDVR 995

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----- 413
             IL ++   R     +R  +  + +   VE L   +   + I E    + N+ +P     
Sbjct: 996  DILSDFYYTRLTYYQKRKDYIGERLKWEVEKLSYQVKFIMMIVEKKLSVSNKPRPVLFEE 1055

Query: 414  ---------KPVMVSRFSLTENQV------------------------------------ 428
                            +   E Q                                     
Sbjct: 1056 LMSLGFPRINKEGKPTYGKVEEQAQIEALNDEDDDDDDEEKSEAEDNAEESEDVVNGPEE 1115

Query: 429  -----DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                 D +L +++ +L K    ++  ++     E E++  L  S K  W     +  E  
Sbjct: 1116 KFGNYDYLLGMKIWALTKERYEKLMKQMQEKQTELERLLKL--SAKDLWEIDLDDFVEHY 1173

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            E F +  +  R        +       ++   +   
Sbjct: 1174 EKFIQYDEEVRNSIVPDAATTKKGKRRKRGKNDDND 1209


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 170/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 640  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 698

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 699  VRKDVKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 756

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 757  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLILINGAD 815

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       E+L+          G            
Sbjct: 816  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 858

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P         +K+ E+I A+++P  ++D
Sbjct: 859  --EVTGSGDRYKFSGIIKQTADNE--VEITELPICTWTQDFKDKLEEIIKAEKVPSFIKD 914

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   DV  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 915  YKDYNTHTDVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 974

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R  + +  +  +++ L         I +   +I  + K 
Sbjct: 975  DILRAFYAVRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1029


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/519 (23%), Positives = 211/519 (40%), Gaps = 59/519 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP+GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPSGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTE-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 V-------KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                   K   +K  DL   R +  + ++   A  Q+ 
Sbjct: 450 TYRQLGHRKTKIAKFDDLPTERVSAHKKAKELAALDQEE 488


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/519 (17%), Positives = 184/519 (35%), Gaps = 83/519 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 714  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLKNEC 772

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 773  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 830

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 831  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 889

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I            I  E L+  +                     Y+  
Sbjct: 890  YSSFIPNYNYKDIINNIKKY-----IDKEPLVPMVP-------------------WYKDF 925

Query: 247  RGGFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G         + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 926  KGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYI 985

Query: 303  DESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            D S+ +     I + P       +  +E +F L    T   + +      ++ +      
Sbjct: 986  DNSSHEDVCFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDP-KLKLQRYASELD 1044

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
            ILK++  HR      R ++ +  +++   I+       L I     ++  + K       
Sbjct: 1045 ILKDFCFHRLNAYTDRKNYLISKLEKEKRIISNKTKFILAIINGELVVNKKKKKILVEEL 1104

Query: 413  ------------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
                                          P+        +T    + +LN+ + SL   
Sbjct: 1105 YRKGYDPYKDIHKLKKEEIFEQELLDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLE 1164

Query: 443  EEYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
            +  ++ S+L     E E + S+      L   ++    I
Sbjct: 1165 KVEELLSQLKEKEQELEILKSITVETMWLKDIEKVEEAI 1203


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/498 (18%), Positives = 182/498 (36%), Gaps = 57/498 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++++   +S+   + +  + ++++    R+IP L DG KP  R+++ +  +  L 
Sbjct: 631  EPGTFLDQSQPQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVMFSCFKRNLR 689

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +    V E     + HG+QS+  ++V LAQ F       L+   G FG+    G
Sbjct: 690  SEIKVAQLVGYVSE--QSAYHHGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGG 747

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    ++ +  LI    D+  + +    +    EP  +    P +L NG  GI
Sbjct: 748  KDAASPRYIFTSLSPLTRLIFNENDDAILSYL-NDDNLSIEPEFYVPIIPMVLVNGAEGI 806

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP+ N  ++ E    L     I  E  +E I       G I            
Sbjct: 807  GTGWSTSIPNFNPVDVVENIRRL-----IRGEDPVEMIPYYRNFRGTIEKVGE------- 854

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                       ++ V  +  G   + ++E+P         E +  L+ A  +   ++   
Sbjct: 855  ----------GKYQVSGIYEGDMDLEISELPVGTWTLNYKEFLESLVQAGVVKDFKEYHT 904

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
            E             +++   + +        + T   +N  V       + +      IL
Sbjct: 905  E-------------KTVSFSVKLSKSISNLKLSTTITINNMVCFDENLGIKKYSTPQEIL 951

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--S 419
            KE+   R      R    ++ +   +  L+  +     +     +I    K + +    S
Sbjct: 952  KEFYDVRLRYYSIRKENMLKVMKEELVKLENKVRFIKEVSTGELVISRRRKGEVIFDLES 1011

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS------LLNS----GK 469
            R     +  + +L++ + SL      ++ +E    L E  K++S       L+      +
Sbjct: 1012 RRYARVDDYEYLLSMSILSLTVERIEKLNNEHAKKLEEYNKLESKTPKELWLDDLEVFER 1071

Query: 470  QQWNQIACEIREVKEIFS 487
            +    +  E +E  +  +
Sbjct: 1072 EYLKIVERETKEYDDELN 1089


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/518 (16%), Positives = 181/518 (34%), Gaps = 81/518 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 708  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC 766

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 767  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 824

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 825  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 883

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I +          I+ E L+  +                     Y+  
Sbjct: 884  YSSFIPNYNYKDIIDNIKRY-----INKEPLIPMVP-------------------WYKDF 919

Query: 247  RGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G      +  + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 920  KGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYI 979

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGI 360
            D S+ +        + +       E +  +  +++        L    +   +      I
Sbjct: 980  DNSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDI 1039

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------- 409
            LKE+   R +    R S+ +  +++   I+       L I     I+             
Sbjct: 1040 LKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELY 1099

Query: 410  --------------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                       D P+        +T    D +L++ + SL   +
Sbjct: 1100 RKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEK 1159

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
               + ++L     E E + ++      L   ++    I
Sbjct: 1160 VEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAI 1197


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 91/200 (45%), Positives = 136/200 (68%), Gaps = 2/200 (1%)

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TEARMT +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+I
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P H++ E+ +  L LIDN   S+E+++ +I GPDFPTGGII   ++ I+E+YR GRG  +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVK 119

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
           VRA+  +E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   
Sbjct: 120 VRAKTHIEKRAN-KDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIR 178

Query: 312 VLFPKNRSLDPDLLMESIFM 331
           V+    R    ++++ ++F 
Sbjct: 179 VVIELKRDAMSEIVLNNLFK 198


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/518 (16%), Positives = 181/518 (34%), Gaps = 81/518 (15%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 708  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC 766

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 767  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 824

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 825  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 883

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I +          I+ E L+  +                     Y+  
Sbjct: 884  YSSFIPNYNYKDIIDNIKRY-----INKEPLIPMVP-------------------WYKDF 919

Query: 247  RGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G      +  + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 920  KGRIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYI 979

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGI 360
            D S+ +        + +       E +  +  +++        L    +   +      I
Sbjct: 980  DNSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDI 1039

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------- 409
            LKE+   R +    R S+ +  +++   I+       L I     I+             
Sbjct: 1040 LKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELY 1099

Query: 410  --------------------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                       D P+        +T    D +L++ + SL   +
Sbjct: 1100 RKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEK 1159

Query: 444  EYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
               + ++L     E E + ++      L   ++    I
Sbjct: 1160 VEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAI 1197


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 119/158 (75%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           + +D+D VDF D Y+  + EPVV PS FPNLLANG+SG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/510 (23%), Positives = 220/510 (43%), Gaps = 55/510 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEILF--NTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
             A +A+++N   +        + PDF +GG++  S       Y+ G G   +RA   + 
Sbjct: 173 IAAQIAVLNNRAFT--------LLPDFYSGGVMDASE------YQDGLGSITMRASIQI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I        I  ++ I+D S +   I +    + 
Sbjct: 218 ---ADQKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH---------RRE 370
           +    ++E++F  ++ +         +   +  +   +  IL+              +  
Sbjct: 273 VYAKDILETLFQHTECQVVLTSKPTAIYNNKPVE-TTISEILRLHTEVLEGYLQKELQIL 331

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL------- 423
                     ++++      +       N+ ++   +  ED  + V+ S           
Sbjct: 332 HDELSQEHYYKSLEYIFIKHRLYDTVRENLSKLGNKVSQEDLHEAVLSSLSPFLASLPET 391

Query: 424 -TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             +     + +L ++ +    E     +L  +  ++  ++  LN+ K+        I+ +
Sbjct: 392 PNKEATGQLASLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNNMKKFT------IKYL 445

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           K + +K  +LG+R+T     S+  K+ L+Q
Sbjct: 446 KGLLAKYGELGKRKTQVLSFSKQKKSVLKQ 475


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 121/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M + G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++ 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ ++++ V F   +++ + EP V P+ +PNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 121/174 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            +LQ +D+  V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/175 (48%), Positives = 123/175 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+G  HPHGD S+YD++VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A 
Sbjct: 61  VMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +D++ V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 133/195 (68%), Gaps = 2/195 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 1   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 60

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +
Sbjct: 61  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHI 119

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 120 EKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 178

Query: 319 SLDPDLLMESIFMLS 333
               ++++ ++F  +
Sbjct: 179 DAMSEIVLNNLFKST 193


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 196/505 (38%), Gaps = 59/505 (11%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++ K+++    + +  + ++++    R+IP + DG KP  R++I+   +  +  
Sbjct: 801  PGTFLDQSTKSITYSDFVNKELILFSMADNM-RSIPSVVDGLKPGQRKVIYTCLKKNIVK 859

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V ++    + HGD S++ ++V LAQ F        +   GNFG+    G 
Sbjct: 860  DQKVFELAGSVSKLAA--YHHGDASLHQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGS 917

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R++  A  +   +DE  ++  +       EP  +    P +L NG  GI 
Sbjct: 918  DAASARYIFTRLSPFARRVFNPLDEPVLE-NNIDEGSVIEPKNYAPIVPMVLINGADGIG 976

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY---IIGPDFPTGGIIVESRESIVE 241
             G +TSIP++N  ++       +        + L +   I       G    +S      
Sbjct: 977  TGWSTSIPNYNPVDVVNNLKRRMGRLAGHENEELPFESMIPWFRGWKGTPEPDSVPG--- 1033

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                     R R    + +  R    IVV+E+P ++       K+ E+I A++ P     
Sbjct: 1034 ---------RYRFNGIIYQDDRNPNEIVVSELPVRMWTDDFKAKLEEVIRAEKSPSWIKD 1084

Query: 302  RDE--SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLD 358
              E     +V  V+  +++ +   +    I      +T    N+      G++ +   ++
Sbjct: 1085 YKEFNDHRNVHFVIQMEDKHVQAAVDEGLIDRFKLSKTVGTTNLVAFDINGQIRRYEKVE 1144

Query: 359  GILKEWLAHRREVLFRRSSFRM-------QAIDRRV----EILKG----LLIAYLNIDEI 403
             IL+E+  +R  +   R    +       + ++ +     EI+ G           + E 
Sbjct: 1145 DILEEFFNYRLNMYGLRKKHWLGVYHTEFRKLNNQYRFVQEIMDGKLVVSKKKKDVVVEE 1204

Query: 404  IAIIRNEDKPKP----------------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
            +     E  PK                         T    D +L++ + S  +    ++
Sbjct: 1205 LRARSYEAFPKESSDPKKAKTKDDDDNEDEDEIDGGTARDYDYLLSMPIWSFTQERLDRL 1264

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQW 472
            K ++D   A+ +++D  + S K  W
Sbjct: 1265 KKQIDAKKAQYDELD--VKSEKDLW 1287


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/161 (59%), Positives = 121/161 (75%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  YL Y++S I  RA+PD RDG KPVHRRI++AM          F KSARIVG VIG+
Sbjct: 2   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD+LVR+AQ F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +D+D VDF   Y+  +SEP V PS+ PNLL NG+SGIAVG
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/517 (23%), Positives = 207/517 (40%), Gaps = 58/517 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTK-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                     LG R+T   +        +      KE
Sbjct: 450 ------TYRQLGHRKTKIAKFDDLPTERISAHKKAKE 480


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/200 (43%), Positives = 134/200 (67%), Gaps = 2/200 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +++D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 4   LAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 63

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN   S+E+++++I GPDFPTGGII   ++ I+E+YR GRG  +VRA+  +
Sbjct: 64  LIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVKVRAKTHI 122

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IV+ E+PYQ  K+RLIE+IAEL   K+I  + ++RDES  +   V+    R
Sbjct: 123 EK-RVNKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIELKR 181

Query: 319 SLDPDLLMESIFMLSDMETR 338
               ++++ ++F  + ME  
Sbjct: 182 DAMSEIVLNNLFKSTTMEIT 201


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/517 (23%), Positives = 206/517 (39%), Gaps = 58/517 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTK-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                     LG R+T   +        +      KE
Sbjct: 450 ------TYRQLGHRKTKIAKFDDLPTERISAHKKAKE 480


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 129/188 (68%), Gaps = 2/188 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 2   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 61

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L L+D+ + S+E L+++I GPDFPTGGI +  ++ I+E+YR GRG  ++RA+  +E+  
Sbjct: 62  LLYLLDHKDASLEDLMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKIRAKTHIEK-K 119

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
                IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R    
Sbjct: 120 SNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMS 179

Query: 323 DLLMESIF 330
           ++++ ++F
Sbjct: 180 EIVLNNLF 187


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/195 (43%), Positives = 133/195 (68%), Gaps = 2/195 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHI 121

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 122 EKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 180

Query: 319 SLDPDLLMESIFMLS 333
               ++++ ++F  +
Sbjct: 181 DAMSEIVLNNLFKST 195


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/175 (45%), Positives = 121/175 (69%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++++ 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +LQ +++  V F   +++ + EP V P+ FPNLL NG +GI+ G AT IP HN+
Sbjct: 121 YLLQDIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 121/519 (23%), Positives = 210/519 (40%), Gaps = 59/519 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTK-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  ++  +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 V-------KEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                   K   +K  DL   R +  + ++   A  Q+ 
Sbjct: 450 TYRQLGHRKTKIAKFDDLPTERVSAHKKAKELAALDQEE 488


>gi|226327143|ref|ZP_03802661.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
 gi|225204361|gb|EEG86715.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
          Length = 459

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 14/319 (4%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K     I +E  N + +K +   L+  GK+Q + I   +   K+     T  G++     
Sbjct: 131 KTRILAISAEQLNEMNKKGRGTRLVALGKEQGDVIEQMLFAPKDEALIFTVDGQQEVLKA 190

Query: 501 EVSRADKATLQQAMIE-----KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           E             I       E +TV++S +G IR  K HS+D  ++ FK GD    A+
Sbjct: 191 EEINYFSGNAGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGHSIDAKSVGFKSGDDYFDAV 250

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
              +   + L+ T G++YT+    L SGR  G+A+   + +     +    + ++T K++
Sbjct: 251 EGMSNQPVHLIDTTGQSYTVDVDALPSGRSKGDALTERLKVQKGAQLRHVVMGENTDKIV 310

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLI 672
           + S  G  FI +  ++ +  + GK+ L +          ++     D + ++ +  ++LI
Sbjct: 311 MASDAGYGFICQVDDLTSKNKAGKSLLTLPENALPLPPQRLNNELTDLIMIITKGGRMLI 370

Query: 673 FSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKI-CEGLTW-IDSAGRSYNRSENDL 726
           F   ++P M +GKG ++ S        G  +V   ++  E  +  +    R    S N+L
Sbjct: 371 FEASELPTMVKGKGNQMVSIPASQAASGEDNVAWLRVLPENASVTLHFGKRKMTMSMNEL 430

Query: 727 LGWLGKRGGVGSLVPKGFP 745
           + +  KRG  G+ +P+G  
Sbjct: 431 VSFKAKRGRRGTSLPRGAQ 449



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 9/201 (4%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           + ++ GDS   A+   +   +L L + G++YTL   ++ SGR  GE +   +       +
Sbjct: 1   MSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYTLSPNDMPSGRSQGEPLTGKLTFPPEASV 60

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659
                  +  + L+ + +G   ++   E+    + GK  L VS + ++   + V      
Sbjct: 61  KYMLAGSAGQEYLLATKEGYGTVLSYDEMETKNKTGKGLLTVSEKTELLAPLLVDPQKKN 120

Query: 660 ---HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY--KDGGISDVICFKICEGLTWID 713
                 ++ +  ++L  S +Q+ EM  +G+G RL +   + G + + + F   +      
Sbjct: 121 EQHWFIIITDKTRILAISAEQLNEMNKKGRGTRLVALGKEQGDVIEQMLFAPKDEALIFT 180

Query: 714 SAGRSYNRSENDLLGWLGKRG 734
             G+       ++  + G  G
Sbjct: 181 VDGQQEVLKAEEINYFSGNAG 201


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 168/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQSDEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       E+L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + +TE+P +       +K+ E+I A ++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTADNE--VEITELPIRTWTQDFKDKLEEIIKADKVPSFIKD 912

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   L          ++     NM       R+ +    +
Sbjct: 913  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 972

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R    +  +   ++ L         I +   +I  + K 
Sbjct: 973  DILRAFYAVRIKLYEKRKQHLLSELQTHLDKLSNQARFVQMIIDGKLVISKKKKA 1027


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 171/416 (41%), Gaps = 33/416 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VRKDIKVVELAGYVSGMTA--YQHGDNSLHATIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNIDDGKVIEPETYVPVVPLVLINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +E+ +    L+       ++L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEEVVDNLKRLMAG-----DELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + +TE+P +       +K+ ++I A+++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTGDNE--VEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKD 912

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
             RD +   +V  ++    ++     + + +     +      +  V      R+ +    
Sbjct: 913  YRDYNTHTNVHFIIQSGVKNTVKKAVEDGLEERFKLVKPIATSNMVAFDAEGRITRYETP 972

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            + IL+ + A R ++  +R    +  +  ++E L         I +   +I  + K 
Sbjct: 973  EDILRAFYAVRIKLYEKRKQHLLSQLQSQLEKLTNQARFVQMIIDGKLVISKKKKA 1028


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 161/399 (40%), Gaps = 31/399 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ + K ++    + +  + ++++   +R+IP + DG KP  R++++   +  +  
Sbjct: 646  PGTFLDHSTKQITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFKRNVKK 704

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+    G 
Sbjct: 705  DMKVVELAGHVSGMTA--YQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGA 762

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY   R++  A  +    DE  + + +  + E  EP ++    P +L NG  GI 
Sbjct: 763  DCASARYIYTRLSPFARRVFNQQDEPLLTYNE-DDGEKIEPELYVPVVPLILINGADGIG 821

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++SIP++N ++I      ++D  E            P F      V           
Sbjct: 822  TGWSSSIPNYNPEDIVANLKRMMDGEEPEPM-------QPWFRGFHGDV----------- 863

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRD 303
              +G  R +    ++E+      + +TE+P +       +K+ ++I A++ P  ++D +D
Sbjct: 864  TPQGPDRYKFSGRIQELNEKE--VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD 921

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGIL 361
             +       +   +       + E +     +         V      R+ +   +  IL
Sbjct: 922  YNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKLSKTIATTNLVAFDPEGRITKYATVSDIL 981

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            KE+ A R +   RR   ++  + + ++ L         I
Sbjct: 982  KEFFAVRLKYYERRKQHQLSELQKDLDKLTNQARFVQMI 1020


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 116/150 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 168/431 (38%), Gaps = 37/431 (8%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 844  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRN 902

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 903  VRKDIKVVELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 960

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + + +  +    EP ++    P +L NG  
Sbjct: 961  GGSDSASARYIYTRLSPFARRIFHPADEPLLTY-NVDDGHTIEPEIYVPVVPLVLINGAD 1019

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D               P  P           +V 
Sbjct: 1020 GIGTGWSTSIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVV- 1065

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + +V  G   + +TE+P +       +++ E+I A+++P  ++D
Sbjct: 1066 ----SLGGERYKFSGRISQV--GENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 1119

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 1120 YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPE 1179

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL+E+ + R +   +R          RVE L+        I E    + N  K     +
Sbjct: 1180 DILREFYSVRIKFYEKRKMPLWSLTQERVEKLR------RQIGEKEIEVDNLIKLSKEDI 1233

Query: 419  SRFSLTENQVD 429
             R  L +   +
Sbjct: 1234 WRKDLDDFIAE 1244


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 172/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VKKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       ++L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----DELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + ++E+P +       +K+ E+I A+++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTGDNE--VEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 912

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   +          ++     NM       R+ +    +
Sbjct: 913  YKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 972

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R    +  +  +++ L         I +   +I  + K 
Sbjct: 973  DILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1027


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 118/154 (76%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ Y++S I  RA+PD+RDG KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HP
Sbjct: 1   SYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQ F  R  L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++
Sbjct: 61  HGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIE 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           ++ VDF+  ++E   EP V P+++PNLL NG++G
Sbjct: 121 KETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|61657493|emb|CAI44405.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga sp. KOL6]
          Length = 652

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 112/316 (35%), Gaps = 24/316 (7%)

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L+ +  ++  +L    +    +  E + +KE +        RRT   +          +
Sbjct: 291 KLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDP-----RRTKITDEELRY---DME 342

Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
            +I +E I + +S++G+         RS +     ++     E D ++  +        L
Sbjct: 343 ELIAEEDIVITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTL 402

Query: 565 LLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKG 621
            ++  GKAY L    +        G  I   ++L   + +V     +   K L++V+  G
Sbjct: 403 FITNLGKAYVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHG 462

Query: 622 NAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678
                   E    T  +G   +++ + +++     +  +   + V  +   ++ F +  +
Sbjct: 463 KIKRTALEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDV 522

Query: 679 PEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
             M R   GV+      D  +  +           +    + + +     L  + KRGG 
Sbjct: 523 RRMGRNAAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGT 582

Query: 737 GSLVPKGFPRSGKFLS 752
           G        ++G  ++
Sbjct: 583 GLRNISDVKKTGYVVA 598



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 16/227 (7%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-------SHSVDLSALHF 545
           GR  + F  +   +K      +  K    V+++  G I+          + +  + A+  
Sbjct: 427 GRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKRTALEEFENATSNRGVRAIRI 486

Query: 546 KEGDSLKIALHAHT-TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604
           + GD +  A    +    +++ +  G     P  ++     +   +Q  I L  + ++V+
Sbjct: 487 EAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRNAAGVQA-IKLQPDDEVVS 545

Query: 605 --AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----G 658
                 ++  ++L V+ KG              R G     +S  +K   VV V      
Sbjct: 546 MDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNISDVKKTGYVVAVRYVRGD 605

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704
           + + VV +N  ++   +  I  + R  KGV+L    D  IS V   K
Sbjct: 606 EEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELGDDSISKVAVVK 652



 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 14/176 (7%)

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535
           E F  +T     R    E    D+    + +  +    VV +  G +        R +  
Sbjct: 470 EEFENATSNRGVRAIRIEAG--DEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGR 527

Query: 536 HSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           ++  + A+  +  D +     + +     IL ++  G     P       +  G  ++ +
Sbjct: 528 NAAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTEKGFGKRTPVELYRIQKRGGTGLRNI 587

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
            D+     +V         +++VV+  G    +  S+  II    KG   +++  +
Sbjct: 588 SDVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELGDD 643


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 189/457 (41%), Gaps = 42/457 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    L+  +    L +A+ T++ERAIP + DGFKPV R  ++   E        F K 
Sbjct: 99  NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 158

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA RY   R
Sbjct: 159 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCR 218

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + Q    I + +    V      + E   P  +    P +LANG  GIA G AT+I  H+
Sbjct: 219 VHQNFWDIYKDISLSPVH----PDPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPHS 274

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            + + +  LA +   EI   ++        FP         + IV   R+      +   
Sbjct: 275 YESLVKCTLAAVKGEEIPEPEVQ-------FPC-------FKGIVR--RINSKSIEIEGL 318

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +     G   +++TE+P +  +   +  + +L    +   +   ++++++  R  +  
Sbjct: 319 YEL----VGQTKLIITEVPVRYDRLEYVSILDKLEEQGK---IVGYKEQTSDGFRFEVTL 371

Query: 316 KNRS-------LDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAH 367
           K +         +P++  E I  + ++      N+ VL   G++ +      ++++++ H
Sbjct: 372 KRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEH 431

Query: 368 RREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           R++   +R  F  +  +   ++           I+E    I    K K  +++      N
Sbjct: 432 RKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEE---KIVLRGKSKAQLIAEVKSKPN 488

Query: 427 QV---DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                + ++ + +  L + E ++++ E      E + 
Sbjct: 489 MAGFENELVGMSIYRLTEDETHKLQEEALKQTKEYDY 525


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 194/533 (36%), Gaps = 83/533 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+    R+IP++ DGFKP  R++I+   +  + 
Sbjct: 657  EPGTVLDPRLTEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVIYGSFKRNIT 715

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                    A  V E     H     S+  +++ LAQ F       +++  G+FG     G
Sbjct: 716  SEIKISTLANYVAEQTDYHHGP--DSLAQTIIGLAQSFVGSNNIYVLNPIGSFGTRATGG 773

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    +T++   I    D+   ++    +E   EP  +    P LL NG  GI
Sbjct: 774  KDAAAPRYISTELTKITRKIFHPFDDPLYNYLQ-EDENTVEPEWYLPILPMLLINGGEGI 832

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  +I      L++      E+L E        TG I     +      
Sbjct: 833  GTGWSTNIPPFNPLDIVRNLRHLMNG-----EELEEMHPWFRGWTGTIEKIGPQ------ 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E+   G   + +TE+P ++  S L E +   +    K  P ++D+
Sbjct: 882  -------RYRVYGRIEQT--GPCALEITELPARMWTSTLKEHLLLGLGGNDKMKPWIKDL 932

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
             ++    +R V+      +D   +M        + +   LN  V       + +   +  
Sbjct: 933  EEQHGNGIRFVVRLTQEEMDKTRVMGFYERF-KLISTISLNNMVAFDPHGKIKKYENVSE 991

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------ 413
            IL E+   R E   +R  +  + +   VE L   +     I E    I N  +       
Sbjct: 992  ILTEFYYVRLEYYQKRKDYMSERLQWEVEKLSFQIKFIKLIIEGEMSITNRPRKQIIADL 1051

Query: 414  ---------KPVMVSRFSLTEN----------------------------QVDAILNLRL 436
                     K    S   ++E                               + +L +++
Sbjct: 1052 EEKGFPRFNKEGKPSYMKISEKDTEEEEGEKGEDEEEVEGVINGPEEVYGSFEYLLGMKI 1111

Query: 437  RSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFSK 488
             +L      + +  L      + ++++LL  S K  W+    ++ E    + K
Sbjct: 1112 WALT---RERYEKLLKQKQDRQVELETLLQYSAKDLWSM---DLDEFVTAYDK 1158


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 85/150 (56%), Positives = 118/150 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  ++ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++++ VDF D Y+  + +P V P+K PNL
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 218/576 (37%), Gaps = 93/576 (16%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++ +++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L 
Sbjct: 702  EPGTHLDPDLEEIPISDFINKELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNLK 760

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G
Sbjct: 761  SEIKVNQLAGYVSENTG--YHHGEQSLVQTIIGLAQDFIGSNNLNILKPNGSFGSRAAGG 818

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               +A RY    + ++   I   +D     +    +E+  EP  +    P LL NG+ GI
Sbjct: 819  KDFSAPRYIFTEINEITRKIFNPLDNALYKYVQ-DDEQTVEPEWYLPVLPMLLVNGSEGI 877

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T++P  N  +I      L++      E++ E         G I+   ++      
Sbjct: 878  GTGWSTNVPPFNPTDIVNNIKKLMNG-----EEMNEMSPWYRGWEGEIVANGKD------ 926

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIR 302
                   R R    +E+       + +TEIP +   + + E +   +  +++ P ++D+ 
Sbjct: 927  -------RFRVIGRIEQTD--ETEVEITEIPVKTWTNNMKEFLLNGLGTEKVKPWIKDME 977

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
            ++   ++R V+      +   L +  +   + + +    NM     MG++ +      I+
Sbjct: 978  EQHGMNIRFVVKLSADEMAKSLKVGLLERFNLISSVSLTNMVAFDPMGKIKKYESPLEIM 1037

Query: 362  KEWLAHRREVLFRR-------SSFRMQA-----------IDRRVEILKGLLIAYLNI--- 400
            +++   R E   RR          ++             ID+ + I        ++I   
Sbjct: 1038 RDFYYVRLEYYQRRKDHITDEMQHQLTKLSEQARFIKLIIDKELSISNKKRSVLVDILQK 1097

Query: 401  ------DEIIAIIRNEDKP------------------------------KPVMVSRFSLT 424
                  D+    + +   P                              +     +    
Sbjct: 1098 FKFVKFDKNSKPVNDSKDPALFVNADELVEEEEEEVGDISQINAGGIPNEDNNEHKPETI 1157

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVK 483
             +  D +L + + SL      + +  L     ++ +++ LL+ S K  WN+   +  E  
Sbjct: 1158 YSHYDYLLGMTIWSLT---RERYEKLLKQKGDKESELNILLSKSAKDLWNEDLDDFLECW 1214

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            + F    D  ++R+         + + +   ++KEP
Sbjct: 1215 QSFL--HDDFQKRSNIIPAKGTKRKSKRTKAVKKEP 1248


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 121/520 (23%), Positives = 210/520 (40%), Gaps = 57/520 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   NISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++   S        + PDF +GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDQPFS--------LFPDFASGGSMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---VNDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L++ ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 VHAKDLLQPLYAHTECQVVLTSRPTAI-YQGKPWETSVSEILRLQTE-TLQSYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLN---IDEIIAIIRNEDKPKPVMVSRFSLT------------ 424
           ++    R    K L   ++     D + A++          V   ++T            
Sbjct: 331 LEDSLTREHYHKTLEYLFIKHKLYDTVRAMLSKRKTSPSASVIHNAVTDALAPFLGTLPT 390

Query: 425 -ENQV-DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            + Q    + +L ++ +   +E   + EL +L  ++  +   L   K         I  +
Sbjct: 391 PDKQATTQLASLTIKKILCFDENAYEKELLSLEKKRCNVQKDLGQLK------KYTILYI 444

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           K++      LG  R T  E               KE  T+
Sbjct: 445 KKLLDAYKHLGH-RKTKIEKFEDALLGKSIHKKAKEASTI 483


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 173/415 (41%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       ++L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----DELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + ++E+P +       +K+ E+I A+++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTGDNE--VEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 912

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLD 358
             +D +   +V  ++  + + +   +          ++     NM      GR+ +    +
Sbjct: 913  YKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDPEGRITRYETPE 972

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R    +  +  +++ L         I +   +I  + K 
Sbjct: 973  DILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1027


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 186/475 (39%), Gaps = 65/475 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 641  QFKPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 699

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 700  VKKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 757

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 758  GGSDSASARYIYTRLSPFARRLFHQADEPLLA-NNVDDGKVIEPETYVPVVPLILINGAD 816

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       ++L+          G            
Sbjct: 817  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----DELVPMKPWFRGFKG------------ 859

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + ++E+P +       +K+ E+I A+++P  ++D
Sbjct: 860  --EVTGSGDRYKFSGIIKQTGDNE--VEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 915

Query: 301  IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLD 358
             +D +   +V  ++  + + +   +          ++     NM       R+ +    +
Sbjct: 916  YKDYNTHTNVHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRYETPE 975

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------ 412
             IL+ + A R ++  +R    +  +  +++ L         I +   +I  + K      
Sbjct: 976  DILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKALLIQE 1035

Query: 413  ---------PKPVMVSRFS------------------LTENQVDAILNLRLRSLR 440
                     PK V                        L+ +  D +L++ L SL 
Sbjct: 1036 LQEKGFKPFPKVVDTPEPGEAGDVEDEEDEEETATAALSSDAYDYLLSMPLWSLT 1090


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/565 (15%), Positives = 214/565 (37%), Gaps = 73/565 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T +++  K +     + +  + ++++   +R+IP + DG KP  R+I+    +  
Sbjct: 662  QFQPGTYLDQKEKLIKYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRN 720

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG  + 
Sbjct: 721  FIKEAKIAQFSGYVSE--HSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQ 778

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 779  GGKDHASARYIYTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTWYVPTIPMVLVNGSE 837

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++SIP++N ++I      L++       +++E       P        R +I +
Sbjct: 838  GIGTGWSSSIPNYNPRDIIANVRRLLNG------EMME-------PMDPWYRGFRGTIEK 884

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------IIAKRI 295
            +    +       +  +EEV      + ++E+P +       E +  +      I    I
Sbjct: 885  TDPTKQESVGYTVKGIIEEV--NETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFI 942

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
               ++  D++     +++  +N  +     +   F L+   +   +++   S G + +  
Sbjct: 943  KDYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFD-SNGTIKKYE 1001

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDR----------------RVEILKGLLIAYLN 399
              + IL+E+   R E   +R    +  ++                 R EI+         
Sbjct: 1002 TPEQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVRGEIIVSNRKRADL 1061

Query: 400  IDEI----------------IAIIRNEDKPKPVMVSRFSLTE-----NQVDAILNLRLRS 438
              E+                IA+    D  +    +  ++++        + +L++ + +
Sbjct: 1062 FHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAEENTDAVSKGGVRATDYEYLLSMAIGT 1121

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEIREVKEIFSKSTDLGR 494
            L   +  ++ ++ D L    + +     + K  W    + +  E+ E  +  +++ +  +
Sbjct: 1122 LTLEKVQELCADRDKLNKGVDDLKK--ATPKALWITDLDALERELDEQDKNDARAEETRK 1179

Query: 495  RRTTFCEVSRADKATLQQAMIEKEP 519
            +  +        K + Q     ++ 
Sbjct: 1180 QLKSRVMSEAGMKVSRQAPKNPRKN 1204


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/187 (44%), Positives = 127/187 (67%), Gaps = 2/187 (1%)

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209
           D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
            E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +E+       IV
Sbjct: 61  KEASLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHIEKRAN-KDIIV 118

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           + E+PYQ  K+RLIE+IA+L+  K+I  + +IRDES  +   V+    R    ++++ ++
Sbjct: 119 IDELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMSEIVLNNL 178

Query: 330 FMLSDME 336
           F  + ME
Sbjct: 179 FKSTAME 185


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 166/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +   ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSTDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       E+L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEDVVDNLKRLMAG-----EELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++       + ++E+P +       +K+ E+I A+++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTADNE--VEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKD 912

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +           L E +     +  +   +  V      R+ +    +
Sbjct: 913  YKDYNTHTNVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 972

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ + A R ++  +R    +  +  +++ L         I +   +I  + K 
Sbjct: 973  DILRAFYAVRIKLYEKRKQHLLSELQTQLDKLSNQARFIQMIIDGKLVISKKKKA 1027


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 170/407 (41%), Gaps = 31/407 (7%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            ++  +  + +   + +  + +++S    R+IP + DG KP  R+I++   +  L      
Sbjct: 742  LDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKNEIKV 800

Query: 73   KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAA 128
             + A  V +V    + HG+QS+  +++ +AQ F       L+   G FG+    G  AAA
Sbjct: 801  AQLAAYVADVSS--YHHGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGKDAAA 858

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             RY    + ++   I    D+  +++    +E   EP  +    P +L NG  GI  G +
Sbjct: 859  ARYIFTELNEITRTIFNEADDPLLNYLQ-DDESTVEPQWYLPVLPMILVNGADGIGTGWS 917

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            T+IPS+N  +I      L+       E + E         G I     +           
Sbjct: 918  TNIPSYNPLDIVANLRRLMRG-----EPMEEMNPWYKGWYGDIEKVGPQ----------- 961

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLEDIRDESAE 307
              + +    +E++      I ++E+P +   + + E  +A L   K +  ++D+ ++   
Sbjct: 962  --KFKISGRIEQIDDN--TIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDMEEQHTT 1017

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLA 366
             +R V+   +  +   L +  +     + T    NM      GR+ + + +  I+K++  
Sbjct: 1018 SIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIVKDFYF 1077

Query: 367  HRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDK 412
             R E   +R +  ++ +  +   I +      + ID+ +++   + K
Sbjct: 1078 VRLEYYEKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKK 1124


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 131/192 (68%), Gaps = 2/192 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L L+D+ + S+E L+++I GPDFPTGGI +  ++ I+E+YR GRG  ++RA+
Sbjct: 61  LNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKIRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+       IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+  
Sbjct: 120 THIEK-KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIE 178

Query: 316 KNRSLDPDLLME 327
             R    ++++ 
Sbjct: 179 LKREAMSEIVLN 190


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/165 (52%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVD 148
           GD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AEL+L  + 
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELG 120

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 121 QGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 165


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 187/520 (35%), Gaps = 72/520 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  ++   ++    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 718  EDYLYGKDTNYLTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKR 776

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 777  EVKGAQLAGSVAEMSS--YHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 834

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI 
Sbjct: 835  DSASPRYIFTMLSPLARLLFPPVDDNVLRFLY-DDNQRVEPEWYMPIIPMVLINGAEGIG 893

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E       L+D  E            P  P+      + + +  +  
Sbjct: 894  TGWSCKIPNFDIRETVNNIRCLLDGKE----------PLPMLPSYKNFKGTIDELGPNQY 943

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          +TE+P +       E++ E ++    K  PL+ D 
Sbjct: 944  VISGEVSILDSTTIE----------ITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 993

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++   +     +   +     +     +  +  ++T    N  VL      + +      
Sbjct: 994  KEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYESPQD 1053

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   R      R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1054 ILKEFFELRLRYYGLRKEWLIGML--GAESAKLNNQARFILEKIDGKIVIENKPKKELIQ 1111

Query: 420  RFSL--------------------------------TENQVDAILNLRLRSLRKLEEYQI 447
                                                T    + +LN+ L  L K ++ ++
Sbjct: 1112 VLIQRGYESDPVKAWKELQNKEEEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKKDEL 1171

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              + DN   E E +     S    W     ++    E   
Sbjct: 1172 CKQRDNKDKELEDLKH--KSPSDLW---KEDLAAFVEELD 1206


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 165/422 (39%), Gaps = 34/422 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++NV  ++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L 
Sbjct: 736  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKLK 794

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +      E     + HG+ S+  ++V LAQ F       ++S  G FG     G
Sbjct: 795  AEIKVAQLGGYCSE--HSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRASGG 852

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++  +I    D++ +++  T +    EP  +    P +L NG+SGI
Sbjct: 853  KDAASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSSGI 911

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N  +I       + N  +           P F         R    +  
Sbjct: 912  GTGWSSDIPNYNPVDIVNNLRRRLANEPMEPM-------HPWF---------RGFTGQIT 955

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA-KRIPLL---- 298
                G ++V   W   +       I +TE+P +V      E+I   I +  +IP L    
Sbjct: 956  SEAPGKYKVLGEWDQPDED----TIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKDY 1011

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             +   E+     I L  + +       +E +F LS         +     G++ +    +
Sbjct: 1012 REYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSAN-LSITNMVCFDPSGKIKKYSTPE 1070

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL ++   R     +R  + +  +    E L       L I E   ++ N  K + V  
Sbjct: 1071 QILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIEKKLVVSNRKKAEIVAE 1130

Query: 419  SR 420
             R
Sbjct: 1131 LR 1132


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 120/517 (23%), Positives = 205/517 (39%), Gaps = 58/517 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----FLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ +L   + D + F D+Y+  + EP +  +K P LL +G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLF--NTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A++++   S        + PDFP GG +  S       Y+ G G   +RA   + 
Sbjct: 173 LEAQIAILNDQPFS--------LLPDFPPGGTMDASD------YQDGLGSIVLRATIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +++ EI        LI  I      + I  ++ I+D S +   I +    + 
Sbjct: 218 ---INDKTLLIKEICPSTTTETLIRSIENAAK-RGIIKIDSIQDFSTDLPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    L+  ++  ++ +         +     P    +  IL+       +   ++    
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTK-TLQNYLKKELLI 330

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT--------------- 424
           ++    R E+    L       ++   +R+    +    S  ++                
Sbjct: 331 LEDSLSR-ELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389

Query: 425 --ENQVDA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             + Q  A +  L ++ +   +E   + EL  L  +   +   L+  K+       ++ E
Sbjct: 390 APDKQATAQLAALTIKKILCFDENSYEKELACLEKKHSSVQKDLSQLKKYTVLYIKKLLE 449

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                     LG R+T   +        +      KE
Sbjct: 450 ------TYRQLGHRKTKIAKFDDLPTERISAHKKAKE 480


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 190/559 (33%), Gaps = 81/559 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 647  DDYLYGQATTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 705

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 706  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 763

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 764  DSASPRYIFTMLSPLARLLFPAKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 822

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 823  TGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTVEELAPNQY 872

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 873  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 922

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 923  REYHTDTTVKFVVKMTEEKLAEAERAGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 982

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 983  ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1040

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1041 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDSEKETEKSDSATDSGPTFNYLLDMPLWY 1100

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            L K ++ ++    +    E E +     S    W     ++    E        G  +  
Sbjct: 1101 LTKEKKDELCKLRNEKEQELETLKR--KSPSDLW---KEDLAAFVEELESENTEGSPQED 1155

Query: 499  FCEVSRADKATLQQAMIEK 517
              E+        ++   E 
Sbjct: 1156 GMEMESQKLRLEKKQKREP 1174


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD RDG KPVHRRI+++M ++ +    A+ K AR+VG+V+G+ HPHGD SVY 
Sbjct: 1   VIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYM 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           +LVR+AQ F     L+ GQGNFG++DGD  A+ RYTEA+M   A  +L  +D+D VDF+ 
Sbjct: 61  ALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+E++ EPVV P++ PNLL NG  GIAVGMAT+IP
Sbjct: 121 NYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHI 121

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R
Sbjct: 122 EKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKR 180

Query: 319 SLDPDLLMESIFM 331
               ++++ ++F 
Sbjct: 181 DAMSEIVLNNLFK 193


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 163/409 (39%), Gaps = 31/409 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++ ++  + +   + +  + ++++    R+IP + DGFKP  R+I++   +  L 
Sbjct: 723  EPGVHLDPDLSIIPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLR 781

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  +GE     + HGDQS+  S++ LAQ F       L+   G FG+    G
Sbjct: 782  SEIKVSQLAGYIGE--HSAYHHGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGG 839

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY    ++++   I    D   +++    +E+  EP  +    P LL NG+ GI
Sbjct: 840  KDASAARYIFTDLSKITRKIFHVDDNPLLNYLQ-DDEQTVEPEWYLPIVPMLLINGSEGI 898

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  +I      L+D       ++ E I       G I            
Sbjct: 899  GTGWSTNIPPFNPVDIVANIRRLMDGQ-----EMEEMIPWYRGWNGSI------------ 941

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDI 301
                   + R    +E++      I +TEIP +     + E +   I    K+   ++D+
Sbjct: 942  -TKISADKFRMEGNIEQIDD--ETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 998

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
             ++   D++ V+      +   L M        + T    NM       ++ +   ++ I
Sbjct: 999  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1058

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            ++++   R +   RR     + +  ++E +         I E    + N
Sbjct: 1059 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNN 1107


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/509 (24%), Positives = 207/509 (40%), Gaps = 54/509 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++     + L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWT---LFLMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETLF--NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ + ++         PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDPSE------YQDGLGSITLRASIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I  ++ I+D S +   I +     S
Sbjct: 218 ---INDKTLVVKQICPQSTTETLIRSIENAAKRGTIK-IDTIQDFSTDVPHIEIKLPKGS 273

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK--------EWLAHRREV 371
                ++  +F  ++ +        V+   +  +   +  ILK                +
Sbjct: 274 R-AKEMLPLLFEHTECQVILYSKPTVIYENKPVEC-SISEILKLHTTALQGYLEKELLLL 331

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSL 423
             + +          + I   L  +   +  I   I  +D  + V+ +           +
Sbjct: 332 QEQLTLDHYHKTLEYIFIKHKLYDSVREVLAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+     + +L ++ +    E     EL  +  ++  I   L    +        ++ + 
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RLKEVTVKYLKGLL 448

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           E       LG R+T       A  + L+Q
Sbjct: 449 ERHG---HLGERKTQITNFKTAKTSILKQ 474


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/606 (19%), Positives = 214/606 (35%), Gaps = 85/606 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP+L DG KP  R+++    +        
Sbjct: 683  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNLMDGLKPGQRKVLFTCLKRNDKREVK 741

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 742  VAQLAGSVAE--HSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 799

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 800  SPRYIFTMLSPLARYIFHKHDDALLRHEY-DDNQKIEPVFYTPVIPMVLVNGADGIGTGW 858

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +EI E    ++D  +            P  P       S ES  E   +  
Sbjct: 859  MTKIPNYNPREIIENLHRMMDGAD----------PKPMIPYYKNFKGSVESCGEYRYVIS 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIP-LLEDIRDE 304
            G   V     VE          +TE+P         E + E  L  + + P ++ D ++ 
Sbjct: 909  GEISVIGPDKVE----------ITELPIGTWTQTYKETVLEPMLHGSDKTPAIITDYKEY 958

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + +     +   NR    +L  + +     ++T   +           + +   +  ILK
Sbjct: 959  NTDTAVHFIVIMNRDKLVELERDGLHKAFKLQTTTSITSMCAFDENQCLNKYDNVVQILK 1018

Query: 363  EWLAHRREVLFRRSSFRM-----------QAIDRRVEILKGLLIA--YLNIDEIIAIIRN 409
             +   R ++  +R  +                   +E   G L+       D I  +IR 
Sbjct: 1019 LFYKVRLDMYHKRKDYLEGILQAEAAKLSNQARFIIEKCDGTLVVENKKKKDMITELIRR 1078

Query: 410  EDKPKPVMVSRFSLTENQV-----------------------DAILNLRLRSLRKLEEYQ 446
              +  PV+  + S    QV                       D +L + + SL K ++  
Sbjct: 1079 NYETDPVVAWKMSQNREQVLEEVVENDEESAPTTDVIERENFDYLLGMTMWSLTKEKKDD 1138

Query: 447  IKSELDNLLAE-------------KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            +  + D  +AE             KE +DSLL    +   +   E ++ K+   K     
Sbjct: 1139 LLRQRDEKIAELKRLQARTPMSLWKEDLDSLLAELNKLEEKEMKEQKKSKQSDKKPPSRF 1198

Query: 494  RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
              +T              +  IEK  I       G ++  ++    +S    +E D    
Sbjct: 1199 YSKTEDTRRIAPVIDVELKKKIEKADIVSKDKKEGIVKKPRAKKDQVS---MEEKDEFDT 1255

Query: 554  ALHAHT 559
             + ++T
Sbjct: 1256 LVDSNT 1261


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/506 (16%), Positives = 185/506 (36%), Gaps = 72/506 (14%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T +E+  K +     + +  + ++++   +R+IP + DG KP  R+I+ +  +  L  
Sbjct: 380 PGTHLEQKNKLIKYSDFINKELILFSVAD-LQRSIPSMVDGLKPAQRKILFSCFKRNLVK 438

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                +    V E     + HG+QS+  ++V +AQ F       L++ +G FG     G 
Sbjct: 439 DLKVVQLQGYVSE--QSAYHHGEQSLQSTIVGMAQNFVGSNNINLLAPKGQFGTRCSGGK 496

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RY    ++ +   +    D+  +D+    +    EP  +    P +L NG  GI 
Sbjct: 497 DHASPRYIYTCLSPITRFLFPKDDDCLLDYLQ-EDGLSIEPTWYAPIIPLVLVNGCEGIG 555

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +T IP++N ++I                 L  ++ G          +  +  +E   
Sbjct: 556 TGWSTFIPNYNPRDIVAN--------------LRRFLNGEKMEPMHPWYKGFKGTIEKSA 601

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ---KSRLIEKIAELIIAK-----RIP 296
              GG        +EEV      + +TE+P +         +  + E +  +     +  
Sbjct: 602 SKEGGGSYAVNGIIEEV--NETTVRITELPIRRWTDEYKDFLNSVIENVRDEKGNLPKDA 659

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQV 354
            ++D R    +         +      +  E +     + T    +   L   +  + + 
Sbjct: 660 FIKDFRKYGDDVSVCFEVLLSEEKMKQVKDEGLLKKFKLATTISTSNMHLFDPKGVIKKY 719

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
              + IL+E++  R E+  +R +F++ +++    IL+  +   L +     I+ N  + +
Sbjct: 720 DSPEEILEEFVHLRFELYEKRKNFKLASLEMEALILENKVRFILGVVTGEIIVNNRKRAE 779

Query: 415 -----------------------------------PVMVSRFSLTENQV---DAILNLRL 436
                                                 V   S T  Q    + +L++ +
Sbjct: 780 LLLELRQKGFTPFPKNKPVEAVVAGAADDTEESESTEDVEENSKTGVQATDYEYLLSMSI 839

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKID 462
            +L   +  ++ ++ D +  E E + 
Sbjct: 840 GTLTLEKVQKLCADKDKISEEVENLR 865


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 1014 TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCCKRNDRREVKVAQLA 1072

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 1073 GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 1130

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 1131 FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 1189

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 1190 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFRGTIQELGQNQYAVSGEIFV 1239

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 1240 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 1289

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1290 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1349

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + M  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1350 RLNYYSLRKEWLMGML--GAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYE 1407

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1408 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTTTGPDFNYILNMSLWCLTKEKVEELIK 1467

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E I   +S
Sbjct: 1468 QRDAKGRELNDLKRKSPSDLWKEDLAAFVEELDKVEAQEREDILAGMS 1515


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/526 (17%), Positives = 198/526 (37%), Gaps = 69/526 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N   +     + +  + ++++    R+IP   DG KP  R++++ M +   + 
Sbjct: 754  PGTYLDHNTDRIPYADFINKELILFSMADNL-RSIPSAIDGLKPGQRKVMYVMFDRKSNS 812

Query: 69   GAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 K   +VG V+G+  + HG+ ++  ++V LAQ F       L+  +G FG     G
Sbjct: 813  E---LKVNTLVGNVLGQAAYHHGEAALSMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGG 869

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++A  +    D+  +D+ +  + +  EP  +    P +L NG  GI
Sbjct: 870  KDAASGRYIFTALPKIARALFPATDDALLDYLE-DDGQKVEPHWYIPVVPQVLLNGAEGI 928

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TS+P++N  EI       +                 D              VE  
Sbjct: 929  GTGWSTSVPNYNPHEIVANLRRRMAGE--------------DVVPMKPWYRGFNGDVE-- 972

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LIIAKRIP-LLEDI 301
              G G F++  R    +         +TE+P +   S   E + E ++ + +IP  ++D 
Sbjct: 973  EFGPGRFKISGRVTQID----EKTYEITELPIRTWTSNYKELLEERIVSSDKIPATIKDY 1028

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
            ++   E     +         ++  + +     +  +      VL    G++ +    + 
Sbjct: 1029 KEYHTESTVNFIVELTAKGQAEIADKGVEAFFKLSCQISTTNMVLFDQDGKIKKYTSAEE 1088

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+E+   R     +R  + +  +    + L         I     ++ N  +   V   
Sbjct: 1089 ILEEFYLLRLSYYQKRKEYLVDQLKLMYDKLSNQARFVQMIISRQLVVSNRKRADIVAEL 1148

Query: 420  RFSLT----------------------------ENQVDAILNLRLRSLRKLEEYQIKSEL 451
            R                                ++  D +LN+ + +L K +  ++  E 
Sbjct: 1149 RQKDFRPFPKQGKASIAAEPEDDEAIDDEDISADSDFDYLLNMAIYNLTKEKVDKLLKER 1208

Query: 452  DNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            D    ++E++  L+  S +  W+    ++ +  E++ +      RR
Sbjct: 1209 D---HKEEELKILIGRSPQNLWD---EDLTKFIELWEEMLAEDDRR 1248


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/186 (44%), Positives = 126/186 (67%), Gaps = 2/186 (1%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L LI
Sbjct: 2   DKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLI 61

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           DN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +E+       
Sbjct: 62  DNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHIEKRAN-KDI 119

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R    ++++ 
Sbjct: 120 IVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIVLN 179

Query: 328 SIFMLS 333
           ++F  +
Sbjct: 180 NLFKST 185


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/150 (54%), Positives = 114/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 199/508 (39%), Gaps = 52/508 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    V+ + K ++ +  + +  + ++ S    R+IP L DG KP  R+I+ A  +  L 
Sbjct: 640  DPEENVDHSQKHLTYKDFVNKELINFSNSD-NARSIPSLCDGLKPGQRKILFACFKRNLK 698

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDG 123
                  + +  V E     + HG+QS+  ++V +AQ FV       +   G FG  N+ G
Sbjct: 699  NEIKVAQLSGYVAE--HSAYHHGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGG 756

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++   +    D+  + + +    +  EP+ +    P  L NG  GI
Sbjct: 757  KEAASARYIHTCLNKITRCVFPEPDDHILYYLE-DEGQQVEPIYYLPIIPTALLNGADGI 815

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP +N +E+ +           SIEK +  +   D             ++  Y
Sbjct: 816  GTGWSTSIPCYNPRELVD-----------SIEKRMMGVPFTD-------------LLPWY 851

Query: 244  RLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIA--KRIPL 297
            +   G      +  +   G+        I +TE+P +         + E + +   + P 
Sbjct: 852  KGFTGEISNNEKSQITVSGKYHLVNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPE 911

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVM 355
            +EDI++  A +    +   +      +  E I     +++  P    VL     ++ +  
Sbjct: 912  IEDIKEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYA 971

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPK 414
             +  I++E+   R     RR  + +  I+R +EI           I+E I +     K K
Sbjct: 972  NICEIMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIRV--RNAKRK 1029

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLR-KLEEYQIKSELDNLLAEK------EKIDSLLNS 467
             ++         Q+  +  ++   L  +LE+ Q +   +            ++ + LL+ 
Sbjct: 1030 DLIKELSVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSL 1089

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
                W+    ++ E+K+      D   +
Sbjct: 1090 P--MWSLTYEKVEEIKQEQKNKQDELDK 1115


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 199/508 (39%), Gaps = 52/508 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    V+ + K ++ +  + +  + ++ S    R+IP L DG KP  R+I+ A  +  L 
Sbjct: 658  DPEENVDHSQKHLTYKDFVNKELINFSNSD-NARSIPSLCDGLKPGQRKILFACFKRNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFG--NIDG 123
                  + +  V E     + HG+QS+  ++V +AQ FV       +   G FG  N+ G
Sbjct: 717  NEIKVAQLSGYVAE--HSAYHHGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++   +    D+  + + +    +  EP+ +    P  L NG  GI
Sbjct: 775  KEAASARYIHTCLNKITRCVFPEPDDHILYYLE-DEGQQVEPIYYLPIIPTALLNGADGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP +N +E+ +           SIEK +  +   D             ++  Y
Sbjct: 834  GTGWSTSIPCYNPRELVD-----------SIEKRMMGVPFTD-------------LLPWY 869

Query: 244  RLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIA--KRIPL 297
            +   G      +  +   G+        I +TE+P +         + E + +   + P 
Sbjct: 870  KGFTGEISNNEKSQITVSGKYHLVNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPE 929

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVM 355
            +EDI++  A +    +   +      +  E I     +++  P    VL     ++ +  
Sbjct: 930  IEDIKEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYA 989

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPK 414
             +  I++E+   R     RR  + +  I+R +EI           I+E I +     K K
Sbjct: 990  NICEIMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVINESIRV--RNAKRK 1047

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLR-KLEEYQIKSELDNLLAEK------EKIDSLLNS 467
             ++         Q+  +  ++   L  +LE+ Q +   +            ++ + LL+ 
Sbjct: 1048 DLIKELSVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSL 1107

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRR 495
                W+    ++ E+K+      D   +
Sbjct: 1108 P--MWSLTYEKVEEIKQEQKNKQDELDK 1133


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 102/539 (18%), Positives = 202/539 (37%), Gaps = 73/539 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+ +S    + +  + ++++    R+IP + DG KP  R++++AM +  
Sbjct: 771  QFKPGTYLDHSVEKISYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRN 829

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +   A   +    V  + G  + HG+ S+  ++V LAQ F        +   GNFG+   
Sbjct: 830  VRKDAKVVELGGYVSGMTG--YQHGEVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 887

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++  A  I    D+  +   +  + +  EP VF    P +L NG  
Sbjct: 888  GGSDCASARYIHTRLSPFARRIFSTADDPLLKH-NVDDGKIIEPEVFVPVVPLVLINGAD 946

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP+ N ++I +    L+D               P  P           +  
Sbjct: 947  GIGTGWSTSIPNFNPEDIVDNLKRLMDGE-------------PVVPMKPWFRGFTGEVTA 993

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
            +      G R +    +++   G + + +TE+P +       +K+ E+I A++ P  ++D
Sbjct: 994  A------GDRYKFSGIIKQT--GDYEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKD 1045

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + + +     +      +  V      R+ +    +
Sbjct: 1046 YKDYNTHSKVHFIIQMDEKHMKKAVEDGLEERFKLSRTITTSNMVAFDAEGRITKYNTAE 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---- 414
             IL+ + A R     +R  F +  + + +E L         I +   +I  + K K    
Sbjct: 1106 DILEAFFAVRIRFYEKRKQFMLAQLHKELEKLTNQARFVQMIIDGKLVIAKKPKAKLMQE 1165

Query: 415  ---------------PVMVSRFSLTENQ-------------VDAILNLRLRSLRKLEEYQ 446
                                     EN               D +L + L SL +    +
Sbjct: 1166 LKEKAFKPFPKGVDAAKEGEDEPTVENDESEEEEKKSGSDGYDYLLGMALWSLTQERVAK 1225

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI-------REVKEIFSKSTDLGRRRTT 498
            +  ++ +   E + +  L  S +  W +   E         E +E  +K +    RRT+
Sbjct: 1226 LLRQMGDKELEIDALIKL--SKEDLWRRDLDEFIAEWRYQLEDEERRAKKSRSYGRRTS 1282


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/526 (15%), Positives = 195/526 (37%), Gaps = 61/526 (11%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++     V     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 692  EPGTFLDMTGDDVGYDDFVNKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLK 750

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E     + HG+ S+  ++V LAQ F       L+   G FG     G
Sbjct: 751  SDIKVAQLSGYVSE--HSAYHHGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGG 808

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   R+  +   I    D+  +D+    + +  EP  +    P +L NG  GI
Sbjct: 809  KDHASPRYIFTRLAPICRAIFPEADDALLDYI-NEDGQVIEPDYYLPILPLVLVNGADGI 867

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N +++ +    L+++ E            P +      +          
Sbjct: 868  GTGWSTSIPNYNPRDLTDNIRRLLNDEEPERM-------HPWYRNFNGSLTE-------- 912

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------IPL 297
             + +G  R       E V      ++++E+P +   +   E +  ++  K       I  
Sbjct: 913  EIVKGEIRYHISGAYEIV--NETTLMISELPIRSWTTDYKEFLENMMNPKEKNATPFITD 970

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             ++   ++     + + P+  +      +E  F LS   +   ++    + G + +    
Sbjct: 971  YKEHHTDTTVHFVVTMTPEKMAQAQKEGIEKKFKLSSKVSTSNMHCFDAN-GGIQKYSNP 1029

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNEDKP--- 413
            + I+K ++  R +   +R +  ++  +  ++ +          +DE ++I R +      
Sbjct: 1030 EEIMKAFVPLRLKAYEKRRTMLIRQAESELKRLANKTRFILAVVDEKLSIGRKKKSALVE 1089

Query: 414  KPVMVSRFSLTENQ-------------------------VDAILNLRLRSLRKLEEYQIK 448
            +   +    +T+ Q                          D +L++ L +L + +  ++ 
Sbjct: 1090 ELESLGFDKMTKTQKVSAAIDEIAEGDEEAADAVESGANYDYLLSMPLWNLTQEKVDELV 1149

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +E ++   E   + +  +      +  A E   +      +     
Sbjct: 1150 TEKESKEEEVAALHATTDKELWIKDLDAFEEALMAFDIEDAKQAAD 1195


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 199/557 (35%), Gaps = 47/557 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++     + +   +    + ++++    R+IP + DG KP  R++++   +  L  
Sbjct: 658  PGIYMDYTQPQIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVH 716

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
                 + A  V       + HG+ S+  ++V LAQ F       L+   G FG  +  G 
Sbjct: 717  ETKVSRLAGYVA--SETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGK 774

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            +A+A RY    ++ +A ++    D+  ++++     +  EP  +    P +L NG  GI 
Sbjct: 775  NASASRYLNTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIG 833

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      +++   +        I+ P +         R SI     
Sbjct: 834  TGWSTFIPNYNPKDITANLRHMLNGEPLE-------IMTPWY------RGFRGSI----- 875

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRI-PLLEDIR 302
                  R +    + ++G     + +TE+P +     + E + A L+  ++I   + D  
Sbjct: 876  TKVAPDRYKISGIINQIGENK--VEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYE 933

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIF-MLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
                E +         +   + L ES+        T+   NM       R+ +   ++ I
Sbjct: 934  SHHGEGIVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R     RR    +  +++R +           I E   ++      K      
Sbjct: 994  LTEFYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSK----KKKKDLI 1049

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN-----LLAEKEKIDSLLNSG------K 469
              L E +   I   +   L  LE     +E +         + +  + LL+        +
Sbjct: 1050 VELKEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYE 1109

Query: 470  QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +    +  +   + E+ +      +        +           I++E +    S+R +
Sbjct: 1110 RYVELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDF 1169

Query: 530  IRSLKSHSVDLSALHFK 546
            +   K      S    K
Sbjct: 1170 VNRTKKKPRGKSTGTRK 1186


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 115/150 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
            ++E+ V+F   Y+  + EP+V P++FP L
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 90/519 (17%), Positives = 185/519 (35%), Gaps = 83/519 (15%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 200 SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC 258

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
              +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 259 KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 316

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 317 SAARYIFTKLASSTRSIFNEFDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 375

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
            ++ IP++N ++I            I  E L+  +                     Y+  
Sbjct: 376 YSSFIPNYNYKDIINNIKKY-----IDKEPLVPMVP-------------------WYKDF 411

Query: 247 RGGFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           +G      +   E +G         + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 412 KGRIESNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLILDYI 471

Query: 303 DESAED---VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           D S+ +     I + P       +  +E +F L    T   + +   ++  + +      
Sbjct: 472 DNSSHEDVCFTIKMDPVKLKKAEEEGLEKVFKLKSTLTTTNMTLFDSNLK-LQRYASELD 530

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------- 412
           ILK++  HR      R S+ +  +++   I+       L I     ++  + K       
Sbjct: 531 ILKDFCFHRLNAYNERKSYLISKLEKEKRIISNKTKFILAIINGELVVNKKKKKILVEEL 590

Query: 413 ------------------------------PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
                                         P+        +T    + +LN+ + SL   
Sbjct: 591 YRKGYDPYKDIHKVKKEEIFEQELLEAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLE 650

Query: 443 EEYQIKSELDNLLAEKEKIDSL------LNSGKQQWNQI 475
           +  ++ ++L     E E + S+      L   ++    I
Sbjct: 651 KVEELLAQLKEKEQELEILKSITVETMWLKDIEKVEEAI 689


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 187/520 (35%), Gaps = 72/520 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  ++   ++    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 683  EDYLYGKDTNYLTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKR 741

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 742  EVKGAQLAGSVAEMSS--YHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 799

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI 
Sbjct: 800  DSASPRYIFTMLSPLARLLFPPVDDNVLRFLY-DDNQRVEPEWYMPIIPMVLINGAEGIG 858

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E       L+D  E            P  P+      + + +  +  
Sbjct: 859  TGWSCKIPNFDIRETVNNIRCLLDGKE----------PLPMLPSYKNFKGTIDELGPNQY 908

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          +TE+P +       E++ E ++    K  PL+ D 
Sbjct: 909  VISGEVSILDSTTIE----------ITELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 958

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++   +     +   +     +     +  +  ++T    N  VL      + +      
Sbjct: 959  KEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYESPQD 1018

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   R      R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1019 ILKEFFELRLRYYGLRKEWLIGML--GAESAKLNNQARFILEKIDGKIVIENKPKKELIQ 1076

Query: 420  RFSL--------------------------------TENQVDAILNLRLRSLRKLEEYQI 447
                                                T    + +LN+ L  L K ++ ++
Sbjct: 1077 VLIQRGYESDPVKAWKELQNKEEEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKKDEL 1136

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              + DN   E E +     S    W     ++    E   
Sbjct: 1137 CKQRDNKDKELEDLKH--KSPSDLW---KEDLAAFVEELD 1171


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/185 (49%), Positives = 135/185 (72%), Gaps = 1/185 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPH D + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFP 227
           GPD+P
Sbjct: 181 GPDYP 185


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 123/509 (24%), Positives = 207/509 (40%), Gaps = 54/509 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++     + L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWT---LFLMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETLF--NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ + ++         PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDPSE------YQDGLGSITLRASIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I  ++ I+D S +   I +     S
Sbjct: 218 ---INDKTLVVKQICPQSTTETLIRSIENAAKRGTIK-IDTIQDFSTDVPHIEIKLPKGS 273

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK--------EWLAHRREV 371
                ++  +F  ++ +        V+   +  +   +  ILK                +
Sbjct: 274 R-AKEMLPLLFEHTECQVILYSKPTVIYENKPVEC-SISEILKLHTTALQGYLEKELLLL 331

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSL 423
             + +          + I   L  +   +  I   I  +D  + V+ +           +
Sbjct: 332 QEQLTLDHYHKTLEYIFIKHKLYDSVREVLAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+     + +L ++ +    E     EL  +  ++  I   L    +        ++ + 
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RIKEVTVKYLKGLL 448

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           E       LG R+T       A  + L+Q
Sbjct: 449 ERHG---HLGERKTQITNFKTAKTSILKQ 474


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 168/431 (38%), Gaps = 37/431 (8%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++   + ++    + +  + ++++    R+IP + DG KP  R++++   +  
Sbjct: 667  QFKPGTFLDHTTEEITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFKRN 725

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S+  ++V LAQ F        +   GNFG+   
Sbjct: 726  VRKDIKVVELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQ 783

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  I    DE  + + +  +    EP ++    P +L NG  
Sbjct: 784  GGSDSASARYIYTRLSPFARRIFHPADEPLLTY-NVDDGHTIEPEIYVPVVPLVLINGAD 842

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N ++I      L+D               P  P           +V 
Sbjct: 843  GIGTGWSTSIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVV- 888

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
                  GG R +    + +V  G   + +TE+P +       +++ E+I A+++P  ++D
Sbjct: 889  ----SLGGERYKFSGRISQV--GENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKD 942

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +      +  V      R+ +    +
Sbjct: 943  YKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPE 1002

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             IL+E+ + R +   +R          RVE L+        I E    + N  K     +
Sbjct: 1003 DILREFYSVRIKFYEKRKMPLWSLTQERVEKLR------RQIGEKEIEVDNLIKLSKEDI 1056

Query: 419  SRFSLTENQVD 429
             R  L +   +
Sbjct: 1057 WRKDLDDFIAE 1067


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 80/190 (42%), Positives = 118/190 (62%), Gaps = 7/190 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       + 
Sbjct: 1   EECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALA 60

Query: 209 NPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+LLE     I GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALLTIIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVNVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE S    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFMLS 333
           +++ +++  +
Sbjct: 179 VVLNNLYKRT 188


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 130/191 (68%), Gaps = 2/191 (1%)

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
           E +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ 
Sbjct: 1   EELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELI 60

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +E+
Sbjct: 61  DGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHIEK 119

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
                  IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R  
Sbjct: 120 RAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 178

Query: 321 DPDLLMESIFM 331
             ++++ ++F 
Sbjct: 179 MSEIVLNNLFK 189


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 168/415 (40%), Gaps = 32/415 (7%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ ++  ++    + +  + ++++    R+IP + DG KP  R++++ M +  
Sbjct: 638  QFKPGTYLDHSMDQITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTMFKRN 696

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            +       + A  V  +    + HGD S++ ++V LAQ F        +   GNFG+   
Sbjct: 697  VRKDIKVVELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQ 754

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  +A+ RY   R++  A  +    DE  +   +  + +  EP  +    P +L NG  
Sbjct: 755  GGSDSASARYIYTRLSPFARRLFHQADEPLL-VNNVDDGKVIEPETYVPVVPLILINGAD 813

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +TSIP++N +++ +    L+       ++L+          G            
Sbjct: 814  GIGTGWSTSIPNYNPEDVVDNLKRLMVG-----DELVPMKPWFRGFKG------------ 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLED 300
               +   G R +    +++ G     + ++E+P +       +K+ ++I A+++P  ++D
Sbjct: 857  --EVTGSGDRYKFSGIIKQTGDNE--VEISELPIRTWTQDFKDKLEDIIKAEKVPSFIKD 912

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             +D +       +   +       + E +     +  +   +  V      R+ +    +
Sbjct: 913  YKDYNTHTNVHFIIQMDEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPE 972

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+ +   R ++  +R    +  +  +++ L         I +   +I  + K 
Sbjct: 973  DILRAFYTVRIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKA 1027


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/537 (16%), Positives = 187/537 (34%), Gaps = 78/537 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLTRLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKIPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 907  VINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILK++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILKDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1074

Query: 420  RFSLTENQVD-------------------------------------AILNLRLRSLRKL 442
                     D                                      +L++ L  L K 
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNYLLDMPLWYLTKE 1134

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRR 495
            ++ ++  + +    E   + +   S    W         E+  V+    +   +G  
Sbjct: 1135 KKDELCKQRNEKEQELNTLKN--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLP 1189


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 198/557 (35%), Gaps = 47/557 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                ++     + +   +    + ++++    R+IP + DG KP  R++++   +  L  
Sbjct: 712  PGIYMDYTQPQIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVH 770

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
                 + A  V       + HG+ S+  ++V LAQ F       L+   G FG  +  G 
Sbjct: 771  ETKVSRLAGYVA--SETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGK 828

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            +A+A RY    ++ +A ++    D+  ++++     +  EP  +    P +L NG  GI 
Sbjct: 829  NASASRYLNTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIG 887

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      +++   +        I+ P +         R SI     
Sbjct: 888  TGWSTFIPNYNPKDITANLRHMLNGEPLE-------IMTPWY------RGFRGSI----- 929

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI-AELIIAKRI-PLLEDIR 302
                  R +    + ++G     + +TE+P +     + E + A L+  ++I   + D  
Sbjct: 930  TKVAPDRYKISGIINQIGENK--VEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYE 987

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIF-MLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
                E           +   + L ES+        T+   NM       R+ +   ++ I
Sbjct: 988  SHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDI 1047

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R     RR    +  +++R +           I E   ++      K      
Sbjct: 1048 LTEFYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSK----KKKKDLI 1103

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN-----LLAEKEKIDSLLNSG------K 469
              L E +   I   +   L  LE     +E +         + +  + LL+        +
Sbjct: 1104 VELKEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYE 1163

Query: 470  QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
            +    +  +   + E+ +      +        +           I++E +    S+R +
Sbjct: 1164 RYVELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDF 1223

Query: 530  IRSLKSHSVDLSALHFK 546
            +   K      S    K
Sbjct: 1224 VNRTKKKPRGKSTGTRK 1240


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 201/499 (40%), Gaps = 44/499 (8%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++ +  ++ ++K ++    + +  + Y+ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 775  TDMSQGIDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRL 833

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + +  V E     + HG+QS+  ++V++A  F      PL++  G FG     
Sbjct: 834  TNEIKVSQLSGYVAEQTS--YHHGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQG 891

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   ++  VA  +   +D+  +++ +    E  +P  +    P LL NG+ G
Sbjct: 892  GSDSASARYIFTKLEPVARYLFNELDDPLLNYLE-EEGESIQPDYYIPIIPMLLVNGSEG 950

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I VGM+TSIP  +  +I +  +  ++N       L + I       G I  +       +
Sbjct: 951  IGVGMSTSIPLFSPIDIIDQLMLRLNNQVA----LKKLIPWYRGFKGTISPD-----RHT 1001

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            YR   G  ++  R            + +TE+P     S   E + +LI    I   ++  
Sbjct: 1002 YRTN-GVIKLVGR-----------NLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESN 1049

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             E++    I+L         DL    +  L  +      ++       ++ ++  ++ I+
Sbjct: 1050 TENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEII 1109

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
             ++   R +   +R  + ++++D +++ L   +     I      I+    +D  K +  
Sbjct: 1110 DQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKELES 1169

Query: 419  SRFSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS-GKQ 470
                  EN           + +L +  + K     +    + L   K +  S+ +S  K 
Sbjct: 1170 GEIVGFENFGTHPPEVYQHLFSLSILDITKERIDNLT---NQLTKRKSEHQSISSSDPKS 1226

Query: 471  QWNQIACEIREVKEIFSKS 489
             W     +++E  E   K 
Sbjct: 1227 LWTADLQQLKEYLEKSDKE 1245


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/537 (16%), Positives = 187/537 (34%), Gaps = 78/537 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLTRLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKIPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 907  VINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILK++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILKDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1074

Query: 420  RFSLTENQVD-------------------------------------AILNLRLRSLRKL 442
                     D                                      +L++ L  L K 
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNYLLDMPLWYLTKE 1134

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRR 495
            ++ ++  + +    E   + +   S    W         E+  V+    +   +G  
Sbjct: 1135 KKDELCKQRNEKEQELNTLKN--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLP 1189


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1272

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/504 (18%), Positives = 179/504 (35%), Gaps = 62/504 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V+++ +   + +  + ++++    R+IP + DG KP  R+++    +  
Sbjct: 751  QFKPGTYLDHDVQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRN 809

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V E     + HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 810  LTKEIKVAQLAGYVSEKTA--YHHGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLA 867

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   I    D+  +++    +    EP  F    P +L NG  
Sbjct: 868  GGKDAASARYIFTNLPRMTRAIFHPADDGLLNYL-VEDGMSIEPDYFMPTVPMVLINGAD 926

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP++N  +I E    ++   E            P F      +E       
Sbjct: 927  GIGTGWSTAIPNYNPVDIVENLRRMMRGEEPEKM-------TPWFRGFKGFIE------- 972

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLE 299
              R+ +  ++V     +E++      + +TE+P +       E + E+     K    ++
Sbjct: 973  --RIDQDKYKVSG--IIEKI--NDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIK 1026

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D  +   +               D   E       + T       V     G++ +    
Sbjct: 1027 DYEEHHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASP 1086

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---- 413
            + IL+E+   R E    R       ++R+ E L         I     ++  + +P    
Sbjct: 1087 EEILEEFFHKRLEFYGHRKQHLADELNRQFERLSNQARFVHMIITKELVVSGKRRPDIVA 1146

Query: 414  -------KPVMVSRFSLTEN-----------------QVDAILNLRLRSLRKLEEYQIKS 449
                   KP      +  E                    D +L + + SL   +  ++ +
Sbjct: 1147 ELRSLKFKPFPKKERAKEEGENEAAEEEEDGDEGQASDYDYLLGMAIWSLTSEKVEKLLA 1206

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWN 473
            E D    E  ++  L  S    W+
Sbjct: 1207 ERDAKEQELIELLKL--SPNNIWD 1228


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 185/498 (37%), Gaps = 68/498 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++     +S    + +  + ++ +   ER+IP++ DG KP  R+I+ A  +  L  
Sbjct: 662  PGTFLDHTADTISYSQFVHKELILFSRAD-LERSIPNMVDGLKPGQRKIMFACFKRNLKT 720

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E     + HG+ S+  ++V LAQ F        +  QG FG     G 
Sbjct: 721  DVKVSQLSGYVSE--HSAYHHGEASLSGTIVGLAQDFVGSNNVNYLVPQGQFGTRLQGGK 778

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R+  +   +    D+  + +      +  EP  +    P +L NG  GI 
Sbjct: 779  DAASPRYIFTRLAPLTRHLFNEHDDRLLAYL-NEEGQSIEPEWYMPVVPTVLVNGAEGIG 837

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+ N ++I      ++D  +    K            G I     ++  +SY+
Sbjct: 838  TGWSTSIPNFNPRDIVANLRLMLDGEQPVAMK-----PWYRGFKGTIEEVPTKTSGKSYQ 892

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +            + +V      + +TE+P +       E + E++        P ++D 
Sbjct: 893  IC---------GVINQVDD--TTLDITELPIRKWTQDYKEFLEEMVKPEDKNATPFIQDY 941

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDG 359
            ++   + V       + S   + L   +     ++T+      +L      + +    + 
Sbjct: 942  KEYHTDLVVHFRVTLSESKMREALAAGLLDKFKLKTKISTGNMMLFNAEGAIQKYASPED 1001

Query: 360  ILKEWLAHRREVLFR------------------RSSF-------RMQAIDRRVEILKGLL 394
            IL+++   R     +                  +  F       +++  +RR + ++G L
Sbjct: 1002 ILRDFYDLRLAYYVKRRAALLRAAEADLLRISNKVRFILAVVGGQLKLSNRRKKDVEGEL 1061

Query: 395  IAYLNIDEIIAIIRNEDKPKPV---------MVSRFSLTENQVDAILNLRLRSLRKLEEY 445
                  DE    + N+ K                  +      D +L++ L SL   +  
Sbjct: 1062 E-----DEGYDKLPNQKKAAQQAAIDEGEDGDGEGGASAPASYDYLLSMPLSSLTLEKVQ 1116

Query: 446  QIKSELDNLLAEKEKIDS 463
             ++SE ++  A  +++ +
Sbjct: 1117 ALQSESEDWQATVQRLRA 1134


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 180/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 709  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 767

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+ ++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 768  GSVAEMSA--YHHGEVTLMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 825

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 826  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 884

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 885  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 934

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 935  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 984

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 985  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1044

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1045 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1102

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    ++NQ D                ILN+ L SL K +  ++  
Sbjct: 1103 SDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1162

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1163 QRDAKGREVSDLKR--KSPSDLW---KEDLAAFVEELDK 1196


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 85/198 (42%), Positives = 129/198 (65%), Gaps = 1/198 (0%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           +D +D++DTY   + EPVV PS+FPNLL NG +GIA GMAT+IP H + EI +  LA  +
Sbjct: 1   KDTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGE 60

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N +I+I +++ +I GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G   I
Sbjct: 61  NKDITIPEVMAFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERI 119

Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
           +VTE+PYQV K+RLIEKIA+L+  K+I  + D+RDES  +   ++    R  +  +++  
Sbjct: 120 LVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNH 179

Query: 329 IFMLSDMETRFPLNMNVL 346
           ++  + ++T F +NM  L
Sbjct: 180 LYKQTALQTSFGINMLAL 197


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 189/457 (41%), Gaps = 42/457 (9%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           N+    L+  +    L +A+ T++ERAIP + DGFKPV R  ++   E        F K 
Sbjct: 102 NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 161

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA RY   R
Sbjct: 162 AALAGGVSEAGYHHGEGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCR 221

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           + Q    I + +    V      + E   P  +    P +LANG  GIA G AT+I  H+
Sbjct: 222 VHQNFWDIYKDISLSPVH----PDPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPHS 277

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
            + + +  LA +   EI   ++        FP         + IV   R+      +   
Sbjct: 278 YESLVKCTLAAVKGEEIPEPEVQ-------FPC-------FKGIVR--RINSKSIEIEGL 321

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +     G   +++TE+P +  +   +  + +L    +   +   ++++++  R  +  
Sbjct: 322 YEL----VGQTKLIITEVPVRYDRLEYVSILDKLEEQGK---IVGYKEQTSDGFRFEVTL 374

Query: 316 KNRS-------LDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAH 367
           K +         +P++  E I  + ++      N+ VL   G++ +      ++++++ +
Sbjct: 375 KRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEY 434

Query: 368 RREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           R++   +R  F  +  +   ++           I+E    I    K K  +++      N
Sbjct: 435 RKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEE---KIVLRGKSKAQLIAEVKSKPN 491

Query: 427 QV---DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                + ++ + +  L + E ++++ E      E + 
Sbjct: 492 MAGFENELVGMSIYRLTEDETHKLQEEALKQTKEYDY 528


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 111/145 (76%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQGVDEDAVDFRDTYNEE 161
            ++A  ++  ++++ VDF D Y+  
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGT 152


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDVVESQEREDVLAGMS 1207


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/567 (15%), Positives = 191/567 (33%), Gaps = 80/567 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  ++   ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQSTSYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLARLLFPPKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K   L+ D 
Sbjct: 907  VINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  +++    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1074

Query: 420  RFSLTENQVD---------------------------------------AILNLRLRSLR 440
                     D                                        +L++ L  L 
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLT 1134

Query: 441  KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRRR 496
            K ++ ++  + +    E   +     S    W         E+  V+    +   +G   
Sbjct: 1135 KEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLPG 1192

Query: 497  TTFCEVSRADKATLQQAMIEKEPITVV 523
                   +  +         +    + 
Sbjct: 1193 KAGKAKGKKAQMCADVLPSPRGKRVIP 1219


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 188/499 (37%), Gaps = 64/499 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 653  PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 711

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
             A   + +  V E     + HG+QS+  +++ +AQ F       +++  G FG  +  G 
Sbjct: 712  QAKVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGK 769

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI 
Sbjct: 770  DHASARYIYTSLTPLTRTIFPKPDDILLNFLR-EDGQSIEPFWYAPILPMVLVNGSEGIG 828

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T +P++N ++I      L+ + ++                     +  +  +    
Sbjct: 829  TGWSTFVPNYNPRDIVTNLKHLLRDEQLEPMD--------------PWYKGFKGTIVKSA 874

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
                G        VE+V      I V E+P +       E +  L+      + P ++D 
Sbjct: 875  TKESGVSYTVTGIVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDY 932

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLS-MGRVPQVMPLDG 359
            R+ + +         +     + L E +     + T     NMN+    G + +    + 
Sbjct: 933  REHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQ 992

Query: 360  ILKEWLAHRREVLFRRS-------SFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRN 409
            IL+++   R E+  +R         + +  +D +V  + G++       N      ++  
Sbjct: 993  ILEDFYHIRLELYVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVEL 1052

Query: 410  EDK-----PKPVMVSRF--------------------SLTENQVDAILNLRLRSLRKLEE 444
            + K     PK    S                       +     + +L++ + +L   + 
Sbjct: 1053 KTKGFTPFPKKAKASDLPVVGGDGSDVEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKV 1112

Query: 445  YQIKSELDNLLAEKEKIDS 463
             Q+ +E D L  + E++  
Sbjct: 1113 QQLCNERDKLEGDVEELKK 1131


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 181/504 (35%), Gaps = 61/504 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +++++ +   + +  + ++++    R+IP + DG KP  R+++    +  
Sbjct: 750  QFKPGTYLDHDIQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRN 808

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
            L       + A  V E     + HG+ S+  ++V LAQ F       L+   G FG    
Sbjct: 809  LTKEIKVAQLAGYVSEKTA--YHHGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLA 866

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    + ++   I    D+  +++    +    EP  F    P +L NG  
Sbjct: 867  GGKDAASARYIFTNLPRMTRAIFHPADDGLLNYL-IEDGMSIEPDYFMPTVPMVLINGAD 925

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP++N  +I E    ++       E+  E         G I          
Sbjct: 926  GIGTGWSTAIPNYNPVDIVENLRRMMRG-----EEPEEMTPWFRGFKGSIE--------- 971

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLE 299
              R+ +  ++V  +  +E++      + +TE+P +       E + E+     K    ++
Sbjct: 972  --RIDQDKYKVSGK--IEKI--NDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIK 1025

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D  +   +               D   E       + T       V     G++ +    
Sbjct: 1026 DYEEHHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASP 1085

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---- 413
            + IL+E+   R E    R       ++R+ E L         I     ++  + +P    
Sbjct: 1086 EEILEEFFHKRLEFYGHRKQHLADELNRQFERLSNQARFVHMIITKELVVSGKRRPDIVA 1145

Query: 414  -------KPVMVSRFSLTEN----------------QVDAILNLRLRSLRKLEEYQIKSE 450
                   +P      +  E                   D +L + + SL   +  ++ +E
Sbjct: 1146 ELRSLKFRPFPKKERAKEEGGNEAAEEEEGDEGQASDYDYLLGMAIWSLTSEKVEKLLTE 1205

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQ 474
             D    E  ++  L  S    W+Q
Sbjct: 1206 RDAKEQELIELLKL--SPNDIWDQ 1227


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 118/167 (70%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 87/523 (16%), Positives = 183/523 (34%), Gaps = 74/523 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             ++ +   + ++  + +  + ++++    R+IP + DG KP  R++I+ M +  L   A 
Sbjct: 713  YIDHSQPVIEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNLKNEAK 771

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
             ++ A  + E     + HG+ S+  +++ LA  F       L+  +G FG+    G  AA
Sbjct: 772  VEQLAGYISEQTA--YHHGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAA 829

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
              RY     +++A L+    D+  +++         EP  +    P LL NG  GI  G 
Sbjct: 830  QPRYIFTMPSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGW 888

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP+ N  ++ +    LI N  +              P        + +I +      
Sbjct: 889  STFIPNFNPSDLVKNIRHLIKNEPLE-------------PMHPWYRGFKGTIQQM----- 930

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI-PLLEDIRDESA 306
               R +    +E+V      + +TE+P ++    + E +  L+ A +    ++D  +   
Sbjct: 931  TPDRYKVSGIIEQVSDD--TVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHT 988

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEW 364
            E+         +      L E +     +      +  V    +  + +      ILKE+
Sbjct: 989  EENVHFRVKLTKEGMATALAEGLENKFKVARTLATSNMVAFDPQGRIRKYDSAYDILKEF 1048

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED------------- 411
               R     RR    +  ++     +         I E   ++  +              
Sbjct: 1049 YEVRLRYYQRRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGF 1108

Query: 412  ----KPKPVMVSRFSLTE--------------------NQVDAILNLRLRSLRKLEEYQI 447
                KPK   ++  +  E                    +    +LN+ + SL       +
Sbjct: 1109 KAIPKPKKGRLAEIAAQETAANRDADDDAEEEDASPEADDFTYLLNMPVYSLTYERYMNL 1168

Query: 448  KSELDNLLAEKEKIDSL------LNSGKQQWNQIACEIREVKE 484
              +      E +K+  +      L   +    +   E+ E  +
Sbjct: 1169 LKKKGECEEELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAK 1211


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
            K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 116 TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 174

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
             V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 175 GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 232

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 233 FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 291

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 292 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 341

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                          + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 342 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 391

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
              +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 392 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 451

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 452 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 509

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
            D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 510 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 569

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
            ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 570 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 617


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 192/503 (38%), Gaps = 61/503 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N+  +     + +  + ++ +    R+IP L DGFKP  R++++   +  L  
Sbjct: 707  PGTHVDYNIADMPYSEFVNKELILFSRADNM-RSIPCLVDGFKPSQRKVLYCCFKRNLRV 765

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S++ +++ +AQ F       L+S  G FG     G 
Sbjct: 766  EIKVAQLAGYVSEHSS--YHHGEASLHGTIINMAQDFIGSNNSNLLSPNGQFGTRILGGK 823

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   ++  +A       D   +++ D  + +  EP  +    P +L NG+ GI 
Sbjct: 824  DAASPRYIFTKLEAIAYKFFDPNDNSLLNYLD-EDGQLIEPEWYVPVIPMVLVNGSEGIG 882

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ IP++N  ++ E   A I     +        + P +      +E R    +   
Sbjct: 883  TGWSSFIPNYNPLDLIENLRARIKGEAPTKP------LVPWYRGFTGSIEERSGTRD--- 933

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                 F VR  + VE+       +V+TE+P +       + +  L+    I   ++   +
Sbjct: 934  GDSQAFVVRGIFHVEDDS----TLVITELPVKTWTHTYKQFLESLMENDTIKDFKENHTD 989

Query: 305  SAEDVRIVLFPKNRS---LDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
            S     I + P+      L P  +M    + S +      NM++    GR+ +      I
Sbjct: 990  SKVLFTISMTPEKMQEIVLSPGGIMRKFKLESSISA---ANMHLFDADGRIQKYDSPHEI 1046

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVE-------------------------------I 389
            +  +   R     +R +  +Q +  ++E                               +
Sbjct: 1047 ISAFYDIRLAYYGKRKAAMLQKLTDQIEMLANKVKFILAVIQGDLIVSNRKKVELLHELV 1106

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
              G    Y N  +      +E+K                + +L++++ SL K    ++++
Sbjct: 1107 EMGYDKLYPNNSKGKNSDEDEEKDDQEGDEEEGDLTKGYNYLLSMKIWSLTKERVDKLRA 1166

Query: 450  ELDNLLAEKEKIDSLLNSGKQQW 472
            EL     E + +++   S ++ W
Sbjct: 1167 ELKEREVEYKSLEA--KSIEELW 1187


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 93/185 (50%), Positives = 135/185 (72%), Gaps = 1/185 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFP 227
           GPD+P
Sbjct: 181 GPDYP 185


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 95/495 (19%), Positives = 201/495 (40%), Gaps = 37/495 (7%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            S+ +  ++  +K ++    + +  + ++ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 766  SDMSQGIDHTIKEMTFPDFINKELIHFSWAANI-RSIPSLIDGLKPGQRKILFASFKRRL 824

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + +  V E     + HG+QS+  +++++A  F      PL++  G FG     
Sbjct: 825  TSEIKVSQLSGYVAEQTS--YHHGEQSLNSTIIKMAHNFVGSNNIPLLTPSGQFGTRLQG 882

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            GD +A+ RY   ++  ++  +   +D+  +++ +    E  +P  +    P +L NG+ G
Sbjct: 883  GDDSASARYIFTKLEPISRHLFNEMDDALLNYLE-EEGESIQPDYYVPIIPMVLVNGSEG 941

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I VGMAT+IP  +  ++ E  +  +DN    +  L + I       G I        ++S
Sbjct: 942  IGVGMATTIPLFSPIDLIEQIICRLDN----VPPLKKIIPWYRGFKGTIQPN-----LKS 992

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            Y+   G  +   +            +V++E+P     S   + + +LI    I   ++  
Sbjct: 993  YKTN-GVIKFDGKG-----------LVISELPIGKWTSDYKDVLNDLIEKDVIRGFQEAN 1040

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             E++    I+L  +      DL    +  L  + +   LN+ V     ++ +    + I+
Sbjct: 1041 TENSVHFNILLSNQQMEEMEDLSENEMITLFKLSSNLHLNLTVFDEKNKIVKYESPEEII 1100

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----PV 416
              +   R E   +R S  M ++ ++++ L   +     I      I+   K +       
Sbjct: 1101 DHFFNIRLEFYNKRRSHLMASLTQQIKRLSSTIKFLETIASGKLKIQGRTKQQLIDDLES 1160

Query: 417  MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                 S T  +   + +L +  + K     ++S+L+    E  +I    +     W    
Sbjct: 1161 QHDFGSHTPEEYQHLFSLSILDITKERIDNLQSQLNKRQVEFNQIKD--SDSSSLWKADL 1218

Query: 477  CEIREVKEIFSKSTD 491
             +++E  E       
Sbjct: 1219 KQLKEYLEKSQDFQK 1233


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 89/567 (15%), Positives = 191/567 (33%), Gaps = 80/567 (14%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + L  ++   ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 182 EDYLYGQSTSYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 240

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 241 EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 298

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 299 DSASPRYIFTMLSPLARLLFPPKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 357

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 358 TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 407

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
           +  G   +     +E          ++E+P +       E++ E ++    K   L+ D 
Sbjct: 408 VINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDY 457

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
           R+   +     +         +     +  +  +++    N  VL      + +   +  
Sbjct: 458 REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLD 517

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 518 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 575

Query: 420 RFSLTENQVD---------------------------------------AILNLRLRSLR 440
                    D                                        +L++ L  L 
Sbjct: 576 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLT 635

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRRR 496
           K ++ ++  + +    E   +     S    W         E+  V+    +   +G   
Sbjct: 636 KEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLPG 693

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVV 523
                  +  +         +    + 
Sbjct: 694 KAGKAKGKKAQMCADVLPSPRGKRVIP 720


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L L+D+ + S+E L+++I GPDFPTGGI +  ++ I+E+YR GRG  ++RA+  +E+  
Sbjct: 61  LLYLLDHKDASLEDLMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKIRAKTHIEK-K 118

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
                IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R    
Sbjct: 119 SNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMS 178

Query: 323 DLLM 326
           ++++
Sbjct: 179 EIVL 182


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 101/544 (18%), Positives = 206/544 (37%), Gaps = 76/544 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N+  + +   + +  + ++++    R+IP + DGFKP  R++++ + +  L  
Sbjct: 707  PGTFLDPNLTEIPISEFINKELILFSMADNI-RSIPSVMDGFKPTQRKVLYGVYKRNLTS 765

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 +    +GE  G  + HG+ S+  +++ LAQ F       ++   G FG+    G 
Sbjct: 766  EIKVAQLVGYIGEHSG--YHHGEASLTQTIISLAQDFVGSNNLNILKPNGGFGSRASGGK 823

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+A RY    +T +   +   +D   +++    +E+  EP  +    P +L NG+ GI 
Sbjct: 824  DASAARYIFTEVTPITRKVYNTLDNPLLNYLQ-DDEQTVEPQWYVPVLPMILVNGSEGIG 882

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP  N  +I +   AL++      E++++ I       G I             
Sbjct: 883  SGWSTQIPPFNPVDIVKNIRALMNG-----EEMVDMIPWFKGWEGTI------------- 924

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIR 302
               G  + R    +EE+      + +TE+P ++    + E + + I    K+ P ++D+ 
Sbjct: 925  SRIGPDKFRMEGNIEEIDD--TTVEITELPARMWTITMKEFLLQAIAGSDKQKPWIKDME 982

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
            ++    ++ V+      ++    +        +      NM      GR+ +   ++ I+
Sbjct: 983  EQHGVGIKFVVTLSKEEMEKTRRIGLKERFKLISIINTSNMVAFDPQGRIKKYDHVNQII 1042

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAI-------------- 406
            +++   R +   RR  +       + E L        + ID  + I              
Sbjct: 1043 EDYYLVRLDYYQRRKDYMADLFSNQFEKLSYQAKFVKMIIDRELNINNKKRVNLVKELKQ 1102

Query: 407  -------------------------IRNEDKPKPVMVSRFSLTENQV-DAILNLRLRSLR 440
                                       NE    P  V +   T     D +L + L SL 
Sbjct: 1103 LGFPGFDKHNKPIRPTELKEEDDEEDINELAADPTAVVQEKKTAVSAYDYLLGMPLWSLT 1162

Query: 441  KLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
                 + +  L     ++ ++++LL  S K  WN+      E  + F K  +  R     
Sbjct: 1163 S---ERYEKLLKQRDEKEAELNNLLRKSAKDLWNEDLDVFLEEWDKFLKEDEESRSSMKV 1219

Query: 500  CEVS 503
             + S
Sbjct: 1220 GDHS 1223


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 101/173 (58%), Positives = 131/173 (75%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q F  RYP I+GQGNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
           SEP V PS+ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+DN + S+E
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLE 176


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/190 (42%), Positives = 119/190 (62%), Gaps = 7/190 (3%)

Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
           E+ VDF+D Y+  + EP + P++FPNLLANG+ GIAVGMAT IP HN++E+       +D
Sbjct: 1   EECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALD 60

Query: 209 NPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           +PE + E+LLE     I GPDFPTG  I+  R+ I ++YR GRG    RA   VEE+ +G
Sbjct: 61  HPEATREELLEALIKLIPGPDFPTGATIL-GRKGIEDAYRTGRGSITQRAVVSVEEI-QG 118

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPD 323
             C+VVTE+PYQV    L +KIA+L+   +I  + DIRDE S    + ++    R     
Sbjct: 119 RQCLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETSGRTGQRLVIVLKRDAVAK 178

Query: 324 LLMESIFMLS 333
           +++ +++  +
Sbjct: 179 VVLNNLYKRT 188


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/521 (16%), Positives = 195/521 (37%), Gaps = 64/521 (12%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +S    + + ++ ++++    R+IP + DG KP  R++++      +       + A  
Sbjct: 789  EISYDDFVNKEFILFSIADNL-RSIPSVMDGLKPGQRKVLYTCFRRNIKKDVKVVELAGS 847

Query: 79   VGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYTEA 134
            V       + HG+ S+  ++V LAQ F        +   GNFG+    G  AA+ RY   
Sbjct: 848  VSGSTD--YAHGEASMQGTIVGLAQNFVGSNNINYLEPSGNFGSRLRGGADAASARYIYT 905

Query: 135  RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            R++  A  +    D+  + + ++ +    EP +F    P +L NG+SGI  G ++ IP+ 
Sbjct: 906  RLSPFARRLFHAHDDALLKYGES-DGHKIEPEMFIPVLPTILVNGSSGIGTGWSSEIPNF 964

Query: 195  NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            N  +I +     + +   S E +      P  P       + E++        G  R   
Sbjct: 965  NPMDIIDNIRIRLQD-GASKEDM-----KPMTPWYKGFTGTTETLAADRFQFTGTIRQ-- 1016

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDESAEDVRIVL 313
                     G   + VTE+P +       EK+ ++I A++ P  ++D  D +  D    +
Sbjct: 1017 --------TGENELEVTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDYNTPDRVHFI 1068

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREV 371
                     + + + +     + ++   +  V    +  + +   +  I++E+   R   
Sbjct: 1069 IKMEDKHMLNAVQKGLEETFKLYSKQSTSNLVAFDAQGRIHKYASVLDIMEEFYHVRLRY 1128

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII--------------------RNED 411
              +R   +++ +++ +  +         I E   ++                       +
Sbjct: 1129 YEKRKQHQLEVMEKELSRMNNQARFIQMIIEGKLVVSKKKKAVLVAELRKLNFTPFSKAE 1188

Query: 412  KPKPV------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
              K                +   ++ +  D +L + + SL +    +++ ++ +   E +
Sbjct: 1189 DAKKAGETEDVQEEDEDEETELEISASDYDYLLGMAIWSLTQERVEKLRKQIGDKEEEVD 1248

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
             +  L  S K  WN    ++    + ++   +   +R    
Sbjct: 1249 TLIKL--SPKDIWNV---DLDAFVDEWNLQLEEDVKRKKKI 1284


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 711  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 769

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 770  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 827

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 828  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 886

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 887  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 936

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 937  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 986

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 987  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1046

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1047 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1104

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1105 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1164

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1165 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDVVESQEREDVLAGMS 1212


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
          Length = 1626

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 711  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 769

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 770  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 827

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 828  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 886

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 887  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 936

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 937  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 986

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 987  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1046

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1047 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1104

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1105 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1164

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1165 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1212


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|332816287|ref|XP_516332.3| PREDICTED: DNA topoisomerase 2-beta [Pan troglodytes]
          Length = 1621

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1207


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1207


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/515 (17%), Positives = 185/515 (35%), Gaps = 74/515 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++   +S+   + +  + ++++    R+IP L DG KP  R++I +  +  L  
Sbjct: 632  PGTFLDQSQTQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNLRS 690

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 +    V E     + HG+QS+  ++V LAQ F       L+   G FG+    G 
Sbjct: 691  EIKVAQLVGYVSE--QSAYHHGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGK 748

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +  +I    D+  +++    +    EP  +    P +L NG  GI 
Sbjct: 749  DAASPRYIFTSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAEGIG 807

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP+ N  ++ E    +                        I  E    +V  YR
Sbjct: 808  TGWSTSIPNFNPVDVVENIRRM------------------------IRGEDPVEMVPYYR 843

Query: 245  LGRGGFRVR--ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              RG        ++ V  +  G   + +TE+P         E +  L+ A      ++  
Sbjct: 844  NFRGTIEKIGEGKFQVSGIYEGDMDLEITELPVGTWTLNYKEFLESLVQAGVARDFKEYH 903

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGI 360
             E             +++   + +        + +   +N  V      R+ +      I
Sbjct: 904  TE-------------KTVSFTVKLSKPVSNLKLNSTITVNNMVCFDENLRIKKYATPQEI 950

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-- 418
            LKE+   R      R    ++ +   +E L+  +     +     +I    K + +    
Sbjct: 951  LKEFYGVRLRYYLIRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLE 1010

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL--------------------DNLLAEK 458
            SR     +  + +L++ + SL      ++ +E                     ++L   +
Sbjct: 1011 SRGYARADDYEYLLSMSILSLTVERIERLSNEHAKRLSEYNQLMGKTPKELWLEDLEVFE 1070

Query: 459  EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            ++   +  +  ++++    E+    +   K     
Sbjct: 1071 KEYLRIAENEAREYD---DELNGCIKKKGKRPKSR 1102


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 240 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 298

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 299 SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 356

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 357 KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 415

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 416 GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 463

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                  R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 464 ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 515

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
            ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 516 EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 575

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 576 LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 633


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 250 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 308

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 309 SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 366

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 367 KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 425

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 426 GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 473

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                  R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 474 ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 525

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
            ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 526 EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 585

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 586 LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 643


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1207


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 187/499 (37%), Gaps = 64/499 (12%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 482 PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 540

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
            A   + +  V E     + HG+QS+  +++ +AQ F       +++  G FG  +  G 
Sbjct: 541 QAKVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGK 598

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI 
Sbjct: 599 DHASARYIYTSLTPLTRTIFPKPDDILLNFLR-EDGQSIEPFWYAPILPMVLVNGSEGIG 657

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +T +P++N ++I      L+ +  +                     +  +  +    
Sbjct: 658 TGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMD--------------PWYKGFKGTIVKSA 703

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
               G        VE+V      I V E+P +       E +  L+      + P ++D 
Sbjct: 704 SKESGVSYTVTGIVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDY 761

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLS-MGRVPQVMPLDG 359
           R+ + +         +     + L E +     + T     NMN+    G + +    + 
Sbjct: 762 REHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQ 821

Query: 360 ILKEWLAHRREVLFRRS-------SFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRN 409
           IL+++   R E+  +R         + +  +D +V  + G++       N      ++  
Sbjct: 822 ILEDFYHIRLELYVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVEL 881

Query: 410 EDK-----PKPVMVSRF--------------------SLTENQVDAILNLRLRSLRKLEE 444
           + K     PK    S                       +     + +L++ + +L   + 
Sbjct: 882 KTKGFTPFPKKAKASDLPVVGGDGSDVEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKV 941

Query: 445 YQIKSELDNLLAEKEKIDS 463
            Q+ +E D L  + E++  
Sbjct: 942 QQLCNERDKLEGDVEELKK 960


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
            K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 94  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 152

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
             V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 153 GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 210

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 211 FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 269

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 270 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 319

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                          + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 320 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 369

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
              +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 370 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 429

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 430 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 487

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
            D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 488 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 547

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
            ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 548 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 595


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E I   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVEAQEREDILAGMS 1207


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDASIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|332215374|ref|XP_003256818.1| PREDICTED: DNA topoisomerase 2-beta-like [Nomascus leucogenys]
          Length = 1621

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1100 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E I   +S
Sbjct: 1160 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDILAGMS 1207


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/516 (17%), Positives = 179/516 (34%), Gaps = 74/516 (14%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DG KP  R+++    +          + A
Sbjct: 612  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLA 670

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 671  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYI 728

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 729  FTMLSPLARLLYPSVDDNLLKFLY-DDNQRVEPEWYIPIIPLVLVNGAEGIGTGWACKLP 787

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P+      + + + ++     G   V
Sbjct: 788  NYDTREIVNNVKRMLDGLD----------PYPLLPSYKNFKGTIQELGQNQYAMSGEIYV 837

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDV 309
                           I +TE+P +       E++ E ++    K   L+ D ++   +  
Sbjct: 838  L----------DRNTIEITELPVRTWTQVYKEQVLEPMLNGTEKTPSLISDYKEYHTDTT 887

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 888  VKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 947

Query: 368  RREVLFRRSS------------------FRMQAIDRRVEI----LKGLLIAYLNIDEIIA 405
            R      R                    F ++ I  ++ I     + L+   +       
Sbjct: 948  RLNYYTLRKEWLIGMLGAEAARLNNQARFVLEKIQGKISIENKTKRDLIQMLVQKGFESD 1007

Query: 406  IIRNEDKPKPVMVSRFSL--------------TENQVDAILNLRLRSLRKLEEYQIKSEL 451
             ++   + +        L              +    + ILN+ L SL K +  ++  + 
Sbjct: 1008 PVKAWKEAQEKATEEDDLQDPNEDNSSDSGTGSGPDFNYILNMSLWSLSKEKVDELVRQR 1067

Query: 452  DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            D    E   +     S    W     ++    E   
Sbjct: 1068 DIKSKELNDLKR--KSPPDLW---KEDLAAFVEELD 1098


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 113/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K PNLL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 1129 TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 1187

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 1188 GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 1245

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 1246 FTMLSSLSRLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 1304

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 1305 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 1354

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 1355 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 1404

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1405 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1464

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1465 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1522

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1523 SDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1582

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1583 QRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1616


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/167 (58%), Positives = 128/167 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGG 230
           AVGMAT+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/185 (50%), Positives = 137/185 (74%), Gaps = 1/185 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFP 227
           GPD+P
Sbjct: 181 GPDYP 185


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/525 (16%), Positives = 197/525 (37%), Gaps = 67/525 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T +++  K +S    + +  + ++++   +R+IP + DG KP  R+I+    +  
Sbjct: 658  QFEPGTHLDQKEKYISYTEFVNKELILFSMAD-LQRSIPSMLDGLKPGQRKILFCAFKRN 716

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                A   + +  V E     + HG+QS+  +++ +AQ +       L+   G FG  N+
Sbjct: 717  FVKEAKVSQFSGYVSE--HSAYHHGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNM 774

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++ +A  +    D+   D+    + +  EP  +    P +L NG+ 
Sbjct: 775  GGKDHASSRYIYTRLSPIARFLFPKEDDTIHDYL-NEDGQYIEPTWYVPIVPMVLINGSE 833

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ +P++N +++      L+++  +                     +  +  +E
Sbjct: 834  GIGTGWSSYVPNYNPRDLVANVRRLLNDEPMEPMD--------------PWYKGFKGTIE 879

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK---RIPLL 298
                   G        +EEV      + ++E+P +       + +  + ++    + P +
Sbjct: 880  KTATKEAGATYTVTGIIEEV--NETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFI 937

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
            +++R    E+        +         E +     + T    +   L  S G++ +   
Sbjct: 938  KEVRAYGDENSVCFEVIMSEENLILAQQEGLLKKFKLATTISTSNMHLFDSNGKIKKYDN 997

Query: 357  LDGILKEWLAHRREVLFRRS------------------SFRM------------QAIDRR 386
             + IL+E+   R E   +R                    F +            +  D  
Sbjct: 998  PEDILEEFYHVRLEYYEKRKKALLEILELELLRIENKVKFILGVVKVEIIVNNRKRADLL 1057

Query: 387  VEILKGLLIAYLNIDEIIAIIRN-EDKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEE 444
            +E+ +     +     + A++ +  D  +         +     D +L++ + +L   + 
Sbjct: 1058 LELKEKGFTPFPKKKAVEAVVADTSDDAEDSEEELNRGVRAGDYDYLLSMPIGTLTLEKV 1117

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEIREVKEI 485
             ++ +E D L  E E + +   + K  W    + +  ++ E  +I
Sbjct: 1118 QELCAERDQLNGEVEDMRN--ATPKLLWLKDLDVLEKQLDEQDKI 1160


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLEALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 195/524 (37%), Gaps = 87/524 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 716  PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 774

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 +    + E  G  + HG+ S+  ++V LAQ F       L+   G FG+    G 
Sbjct: 775  EIKVAQLVGYISEHTG--YHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGK 832

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    +T +  +I   +D+D   +    + +  EP  +    P LL NG  GI 
Sbjct: 833  DFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQ-DDAQTVEPEAYLPIIPMLLVNGAEGIG 891

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS N  +I      +++      E+ ++         G +   S E       
Sbjct: 892  TGWSTNIPSFNPVDIVANIRRMMNG-----EEPVDMTPWFKGWEGDLERISPE------- 939

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                  + +    +E+V      + +TEIP +   + + E +   +   + P ++D+ ++
Sbjct: 940  ------KYKVLGKIEQVDDD--TVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKDMEEQ 990

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKE 363
               ++R V+      +D  L M  +     + +    NM      GR+ +    + ILK+
Sbjct: 991  HGINIRFVVRLLKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANEILKD 1050

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
            +   R E+  RR     +    ++  L         I E    I N+ +           
Sbjct: 1051 YYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRLEMVDDLKKLK 1110

Query: 413  ------------------------------------------PKPVMVSRFSLTENQVDA 430
                                                      P+     +   T +Q D 
Sbjct: 1111 FTRFNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQYKPETTYSQYDY 1170

Query: 431  ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWN 473
            +L + + SL      + +  L     ++E+++ LL  S K  WN
Sbjct: 1171 LLGMAIWSLT---RERYEKLLRQRDEKQEELNELLKKSAKDLWN 1211


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/537 (16%), Positives = 187/537 (34%), Gaps = 78/537 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  VGE+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVGEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +  L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLTRLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +   P+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKTPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 907  VINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILK++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILKDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1074

Query: 420  RFSLTENQVD-------------------------------------AILNLRLRSLRKL 442
                     D                                      +L++ L  L K 
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNYLLDMPLWYLTKE 1134

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRR 495
            ++ ++  + +    E   + +   S    W         E+  V+    +   +G  
Sbjct: 1135 KKDELCKQRNEKEQELNTLKN--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLP 1189


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 184/455 (40%), Gaps = 46/455 (10%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L E  +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E     
Sbjct: 104 SNHLTE--LHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQN 161

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + F K A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA
Sbjct: 162 RSKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAA 221

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY   R+ Q    I + ++   V        E   P  +    P +LANG  GIA G A
Sbjct: 222 PRYVFCRVHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYA 277

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  H+ + + +   A I+   I   +    +  P+F                     G
Sbjct: 278 TNIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEF--------------------SG 313

Query: 249 GFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             R  +   +E  G     G   + +TE+P +  +   +  + +L    +   +   +++
Sbjct: 314 VIRRVSAKTIEVEGLYELSGQTKLTITELPVKFDRLSYVILLDKLKDQGK---IVSYKEQ 370

Query: 305 SAEDVRIVLFPKNRSL-------DPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMP 356
                R  +  K +         +P+   E I  +  +      N+ VL+  G++ +   
Sbjct: 371 HKNGFRFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYEC 430

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKP 415
            + ++++++ HRR+    R  +  Q  +   ++         + ID+ I I   +     
Sbjct: 431 AEDVIRDFVEHRRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQKAELV 490

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
             ++     +   + ++ + +  + + E Y+++ E
Sbjct: 491 KEIASNPDFKGFENELVGMSIYRMTEDETYKLQDE 525


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/185 (50%), Positives = 136/185 (73%), Gaps = 1/185 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           PF  RYPLI GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++   
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP   P++ P++L NGT GIAVGMAT IP HN+ E+ EA++ L++NP+ S+ +L+  + 
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 223 GPDFP 227
           GPD+P
Sbjct: 181 GPDYP 185


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella virus
            1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 192/462 (41%), Gaps = 43/462 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++     V +   +++  + ++     ER+IP + DGFKP  R++++   +  L 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVLYCAFKRNLT 677

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E     + HG+ S+  ++V LAQ +        +  +G FG+    G
Sbjct: 678  SDVKVAQFSGYVAE--HSAYHHGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGG 735

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   ++      +    D++ + +    + +  EP  +    P++L NG+SGI
Sbjct: 736  KDHASARYIFTKLNPKTRQVFVDTDDNLLKYLY-DDGDKIEPECYVPIIPSILVNGSSGI 794

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS+N ++I +    L     IS E L+E         G I+           
Sbjct: 795  GTGSSTNIPSYNPKDIVDNVKRL-----ISGEDLVEMKPWYKGFKGKIM----------- 838

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G +  +  +    +  G   IVV+E+P         E +  L+  K I    +   
Sbjct: 839  ETSPGVYVTKGLY----MPNGK-TIVVSELPVGKWTHDYKEHLDGLLEKKIISYFREKHS 893

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
            ++      VLF  +   +P+  ++ + + + + +    NM+     G++ +      I++
Sbjct: 894  DTD-----VLFEIDFVGNPN--IDILKLETTIRST---NMHAFDPSGKIKKYDTPLDIIR 943

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDE-IIAIIRNEDKPKPVMVS 419
            +W   R+++  +R ++ ++ +  R  I   K   I  +N DE II           +   
Sbjct: 944  DWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKL 1003

Query: 420  RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
             F   + + D +LN+R+ SL      +++ E   L  E + +
Sbjct: 1004 NFYKVDGKYDYLLNMRISSLTLERATELEREAVKLNKELDDL 1045


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDPSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|332286985|ref|YP_004421886.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/510 (23%), Positives = 219/510 (42%), Gaps = 55/510 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEILF--NTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A+++N   +        + PDF +GG++  S       Y+ G G   +RA     
Sbjct: 173 IEAQIAILNNRAFT--------LLPDFYSGGVMDASE------YQDGLGSITMRASIQTV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I  ++ I+D S +   I +    + 
Sbjct: 219 D----QKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH---------RRE 370
           +    ++E +F  ++ +         +   +  +   +  ILK              +  
Sbjct: 273 VYAKDIIEPLFQHTECQVVLTSRPTAIYNNKPIE-TSVSEILKLHTEVLEGYLQQELQIL 331

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL------- 423
                     ++++      +       N+ ++   +  ED  + V+ +           
Sbjct: 332 HDELAQEHYYKSLEYIFIKHRLYDTVRENLSKLKNKVSQEDLHEAVLTALAPFLSSLPEI 391

Query: 424 -TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
            ++     + +L ++ +    E     +L  +  ++  +   L++ K+        I+ +
Sbjct: 392 PSKQATGQLASLAIKKILCFNENSYTKDLATIEKKQAAVKKDLSNMKKFT------IKYL 445

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           K + +K  +LG+R+T     S+  K+ L+Q
Sbjct: 446 KGLLAKYGELGKRKTQVLSFSKQKKSILKQ 475


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 171/412 (41%), Gaps = 30/412 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + + ++ +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKEFILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 778  EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGK 835

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQ-DDEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS+N +++      L++      E+L E         G +     +       
Sbjct: 895  TGWSTNIPSYNPKDLVTNIRRLMNG-----EELQEMTPWYKGWGGDLEPMGPQ------- 942

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRD 303
                  + +    +E++      + +TEIP +   + + E +       K  P ++D+ +
Sbjct: 943  ------KFKVSGRIEQIDSN--TVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEE 994

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
                 +R V+   +  +   L +  +     + +    NM     MGR+ +   +  I+K
Sbjct: 995  HHTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIK 1054

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            ++   R E   +R  +    +  ++ +L         I E    + N+ K +
Sbjct: 1055 DFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQ 1106


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/187 (41%), Positives = 116/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+       +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E + GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLESLIERVPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VRL
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 151/408 (37%), Gaps = 38/408 (9%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + V+   K +S    + +  + Y+     ER+IP++ DG+KP  R++++   +  L    
Sbjct: 713  SYVDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNEC 771

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ F        +   G FG+    G  A
Sbjct: 772  KVAQLVGYIAE--HSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDA 829

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            +A RY   ++      I    D+  + +      +  EP  +    P +L NG  GI  G
Sbjct: 830  SAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTG 888

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             ++ IP++N ++I            I  E L+  +                     Y+  
Sbjct: 889  YSSFIPNYNYKDIINNIKKY-----IDKEPLVPMVP-------------------WYKDF 924

Query: 247  RGGFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            +G      +   E +G         + +TE+P +       E + EL+  ++  L+ D  
Sbjct: 925  KGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYI 984

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGI 360
            D S+ +        + +       E +  +  +++        L      + +      I
Sbjct: 985  DNSSHEDVCFTIKMDPTKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYASELDI 1044

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
            LK++  HR      R ++ +  +++   I+       L I     ++ 
Sbjct: 1045 LKDFCFHRLNAYTDRKNYLISKLEKEKRIISNKAKFILAIINGELVVN 1092


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 187/499 (37%), Gaps = 64/499 (12%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++  + ++    + +  + ++L+    R++P + DG KP  R+I+ A  +     
Sbjct: 653  PGTFLDQTQRVITYSDFINKELILFSLAD-LARSVPSMVDGLKPGQRKILFAAFKRNFTS 711

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
             A   + +  V E     + HG+QS+  +++ +AQ F       +++  G FG  +  G 
Sbjct: 712  QAKVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGK 769

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              A+ RY    +T +   I    D+  ++F    + +  EP  +    P +L NG+ GI 
Sbjct: 770  DHASARYIYTSLTPLTRTIFPKPDDILLNFLR-EDGQSIEPFWYAPILPMVLVNGSEGIG 828

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T +P++N ++I      L+ +  +                     +  +  +    
Sbjct: 829  TGWSTFVPNYNPRDIVTNLKHLLRDEPLEPMD--------------PWYKGFKGTIVKSA 874

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDI 301
                G        VE+V      I V E+P +       E +  L+      + P ++D 
Sbjct: 875  SKESGVSYTVTGIVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDY 932

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLS-MGRVPQVMPLDG 359
            R+ + +         +     + L E +     + T     NMN+    G + +    + 
Sbjct: 933  REHNTDTRVHFEISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQ 992

Query: 360  ILKEWLAHRREVLFRRS-------SFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRN 409
            IL+++   R E+  +R         + +  +D +V  + G++       N      ++  
Sbjct: 993  ILEDFYHIRLELYVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVEL 1052

Query: 410  EDK-----PKPVMVSRF--------------------SLTENQVDAILNLRLRSLRKLEE 444
            + K     PK    S                       +     + +L++ + +L   + 
Sbjct: 1053 KTKGFTPFPKKAKASDLPVVGGDGSDVEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKV 1112

Query: 445  YQIKSELDNLLAEKEKIDS 463
             Q+ +E D L  + E++  
Sbjct: 1113 QQLCNERDKLEGDVEELKK 1131


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 176/425 (41%), Gaps = 51/425 (12%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             S++  ++   L +AL TI  RAIP L DGFKPVHR  +H+ ++     G+ F+K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKG----GSGFQKVASI 57

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ SV ++L  +A  +    PL    G FG+       A RY   +++ 
Sbjct: 58  AGGVAIYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSP 117

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           + + I    D          + E   P  +    P +L NG  GIA G AT+IP H+   
Sbjct: 118 LFKAIYMDEDLTI----PHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVS 173

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           +    ++ ++  + +++     +  P F                    +G       +  
Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPQF--------------------KGDIVDGTMYGK 208

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E+ +G   +V+TEIP +  + + I  + +L        +   +D S ED R  +  K  
Sbjct: 209 YEL-QGKTKLVITEIPVKYDRVKYIAILDKLEEKGC---IVSYKDLSKEDFRYEITLKRE 264

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             +  L  E I     +      N+NV+  G++      + +LK+++  R  V  +R   
Sbjct: 265 YAN-GLTHEKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRMTVYQQRIEK 323

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------FSLTENQVDAI 431
           R+Q         + L  A   ++ I  +I + D  K +  S        +   EN  + +
Sbjct: 324 RIQEAK------EALARALAKVEFIDQMIESPDSLKGLSRSEAVQFVSTWKGCENHAEIL 377

Query: 432 LNLRL 436
           + + +
Sbjct: 378 VAMNI 382


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 119/167 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL NG+SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/511 (24%), Positives = 222/511 (43%), Gaps = 57/511 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLANKG----YLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  D EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKEILF--NTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A+++N   +        + PDF +GG++  S       Y+ G G   +RA     
Sbjct: 173 IEAQIAILNNRAFT--------LLPDFYSGGVMDASE------YQDGLGSITMRASIQTV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I  ++ I+D S +   I +    + 
Sbjct: 219 D----QKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    ++E +F  ++ +         +   +  +   +  ILK         L +     
Sbjct: 273 VYAKDIIEPLFQYTECQVVLTSRPTAIYNNKPVE-TSISEILKLHTEVLEGYLQKELEI- 330

Query: 380 MQAIDRRVEILKGLLIAYL----------NIDEIIAIIRNEDKPKPVMVSRFSL------ 423
           +Q    +    K L   ++          N+ ++   +  ED    V+ +          
Sbjct: 331 LQDELAQEHYYKSLEYIFIKYRLYDTVRANLSKLKNTVSQEDLHAAVLTALAPFLSSLPT 390

Query: 424 --TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
             ++     + +L ++ +    E +   +L  +  ++  ++  L++ K+        I+ 
Sbjct: 391 IPSKQATGQLASLAIKKILCFNENRYTKDLAAIEKKQAAVNKDLSNMKKFT------IKY 444

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +K + +K  +LG+R+T     S+  K+ L+Q
Sbjct: 445 LKGLSAKYGELGKRKTQVLSFSKQKKSILKQ 475


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
            phycodnavirus 1]
          Length = 1083

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 197/485 (40%), Gaps = 41/485 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N + +++ N   +S+   +++  + ++     +R+IP+L DG K   R+I+++  +  L 
Sbjct: 632  NRDGVLDTNQLQISVCDFVDKEMIHFSKYDC-DRSIPNLMDGLKVSQRKILYSAFKKNLV 690

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E  G  + HG+ S+  ++V +AQ F       ++   G FG     G
Sbjct: 691  SEIKVAQFSGYVSEHSG--YHHGESSLNGAIVNMAQTFVGSNNINVLMPNGQFGTRLQGG 748

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY   ++ ++  +I +  D+  +++    +    EPV +    P +L NGT GI
Sbjct: 749  KDSASERYIFTQLNKITRMIFKKEDDVILNYL-NDDGTPVEPVFYAPILPMILVNGTKGI 807

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N +E+ +  L  +++P      + ++I      TG I  E         
Sbjct: 808  GTGFSTDIPCFNPKELIDYILKKLEDPNH----IRDFIPYYKHFTGTIEKE--------- 854

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                  F  + ++ ++        I++TE+P  V     I  + + I+  ++   +D  D
Sbjct: 855  --DSRRFITKGKYSIQN-----KTIIITELPIGVWNEDYITHLEKCIVDNKL---KDYSD 904

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +S + V         ++D + ++++  + +                ++     +  I  +
Sbjct: 905  QSTDSVIYFKLTLKENMDEEAILKTFKLTT--TLSINNMNLFDPFDKLVHYNEVHEICDD 962

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEI---LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            ++  R     +R  + ++ +   + I       +   LN    +    N    + +   +
Sbjct: 963  FIQVRLGYYEKRKLYLVKMLSEEMNILSNKCKYINELLNDTLDLRKKSNSQMVELLQQKK 1022

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            +    +    ++ + + S+ K     +    +    +K+ +   LN      +    E+ 
Sbjct: 1023 YDTLNDSYHYLIKMPMDSVCKENVDTL----NEQFKKKKDLLDELNKTSNV-DLWKKELS 1077

Query: 481  EVKEI 485
            E+KE+
Sbjct: 1078 ELKEM 1082


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 208/534 (38%), Gaps = 60/534 (11%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L    
Sbjct: 652  TTVDHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNLKNEC 710

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  ++V +AQ F       L+   G FG+    G  A
Sbjct: 711  KVAQLTGYIAE--HSAYHHGENSLQQTIVNMAQDFVGSNNINLLLPCGQFGSRKEGGKDA 768

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            AA RY   +++ +   I    D+  +D++   + +  EP  +    P +L NG  GI  G
Sbjct: 769  AAARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTG 827

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             +T IPS+N  ++ +  +  +DN ++                          ++  YR  
Sbjct: 828  FSTYIPSYNPIDVIDNIVNFLDNKDM------------------------NDMIPWYRNF 863

Query: 247  RGGFRVRAR-----WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--LLE 299
            +G      +         E+      +V+TE+P     +   E +  +++  +     + 
Sbjct: 864  KGTVTRNTKLGYDITGKYELNHSLNQLVITELPVNRWINDYREFLNSIMVTNKEDEGYIT 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D  D S+ +   +    N    PD + + I  +  ++T  P +  +L     R+ +    
Sbjct: 924  DYGDYSSNEDIKIKIKLN-DSGPD-ITDDIEKVFKLKTTIPTSNMILFDCNKRIKKYNGA 981

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY-LNIDEIIAIIRNEDKPKPV 416
              ILK+++  R +   +R  + ++ +  +++ L   +    + I+  + I R   K    
Sbjct: 982  IDILKDFITTRVKYYSKRREYMIKQLQLQLQQLSNQIRFINMIINNELVIFRKSKKQIVS 1041

Query: 417  MVSRFSL-TENQ-------------VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
             + R +  T  Q              + +L + L SL      ++ +E ++     +++ 
Sbjct: 1042 ELKRLNFNTYKQEEEEDEEDNDIEGFNYLLKMSLLSLTLDHINKLNNEYNSKQVLLKEL- 1100

Query: 463  SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +  +  Q + +    +++     ++     +R     E    +   +   +  
Sbjct: 1101 -INTTPIQLYKKDLSVLKDQLIQTNQYRPYEKRVKIQPEPIIPESVHVTNGIPP 1153


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/148 (54%), Positives = 114/148 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/511 (24%), Positives = 222/511 (43%), Gaps = 57/511 (11%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    +  ++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+ IL   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN+ E+
Sbjct: 115 AKDILF--NTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            EA +A+++N   +        + PDF +GG++  S       Y+ G G   +RA   + 
Sbjct: 173 IEAQIAILNNRTFT--------LLPDFYSGGVMDASE------YQDGLGSITIRASIQIV 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I  ++ I+D S +   I +    + 
Sbjct: 219 DSK----TLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPHIEI-KLPKG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +    ++E +F  ++ +         +   +  +   +  ILK         L +     
Sbjct: 273 IYAKDILEPLFQYTECQVVLTSKPTAIYNNKPVE-TSISEILKLHTEALEGYLQKELQI- 330

Query: 380 MQAIDRRVEILKGLLIAYLN----------IDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +     +    K L   ++           + ++   +  ED  + V+ S      +  +
Sbjct: 331 LHDELAQEHYYKSLEYIFIKHRLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFISSLPE 390

Query: 430 A--------ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           A        + +L ++ +    E     +L+ +  ++  +   L++ K+        I+ 
Sbjct: 391 APCKQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKKFT------IKY 444

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +K + +K  +LG+R+T     S   K+ L+Q
Sbjct: 445 LKGLLAKYGELGKRKTQILSFSNQKKSVLKQ 475


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/524 (18%), Positives = 195/524 (37%), Gaps = 87/524 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 716  PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 774

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 +    + E  G  + HG+ S+  ++V LAQ F       L+   G FG+    G 
Sbjct: 775  EIKVAQLVGYISEHTG--YHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGK 832

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    +T +  +I   +D+D   +    + +  EP  +    P LL NG  GI 
Sbjct: 833  DFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQ-DDAQTVEPEAYLPIIPMLLVNGAEGIG 891

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS N  +I      +++      E+ ++         G +   S E       
Sbjct: 892  TGWSTNIPSFNPVDIVANIRRMMNG-----EEPVDMTPWFKGWEGDLERISPE------- 939

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
                  + +    +E+V      + +TEIP +   + + E +   +   + P ++D+ ++
Sbjct: 940  ------KYKVSGKIEQVDDD--TVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKDMEEQ 990

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKE 363
               ++R V+      +D  L M  +     + +    NM      GR+ +    + ILK+
Sbjct: 991  HGINIRFVVRLSKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANEILKD 1050

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
            +   R E+  RR     +    ++  L         I E    I N+ +           
Sbjct: 1051 YYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRSEMVDDLKKLK 1110

Query: 413  ------------------------------------------PKPVMVSRFSLTENQVDA 430
                                                      P+     +   T +Q D 
Sbjct: 1111 FTRFNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQYKPETTYSQYDY 1170

Query: 431  ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWN 473
            +L + + SL      + +  L     ++E+++ LL  S K  WN
Sbjct: 1171 LLGMAIWSLT---RERYEKLLRQRDEKQEELNELLKKSAKDLWN 1211


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/509 (24%), Positives = 206/509 (40%), Gaps = 54/509 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +       ++ YA   I ERAIP + DG KPV RR++     + L       K A I G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWT---LFLMDDGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +  LHPHGD  + ++LV LA     +  LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A   L   + D + F D+Y+  + EP + P+K P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 ARETLF--NTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +A++++ + ++         PDFP+GG++  S       Y+ G G   +RA   + 
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDPSE------YQDGLGSITLRASIDI- 217

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
                   +VV +I  Q     LI  I        I  ++ I+D S +   I +     S
Sbjct: 218 ---INDKTLVVKQICPQSTTETLIRSIENAAKRGTIK-IDTIQDFSTDVPHIEIKLPKGS 273

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK--------EWLAHRREV 371
                ++  +F  ++ +        V+   +  +   +  ILK                +
Sbjct: 274 R-AKEMLPLLFEHTECQVILYSKPTVIYENKPVEC-SISEILKLHTTALQGYLEKELLLL 331

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------FSL 423
             + +          + I   L  +      I   I  +D  + V+ +           +
Sbjct: 332 QEQLTLDHHHKTLEYIFIKHKLYDSVREALAINKKISADDLHQAVLHALEPWLHELATPV 391

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           T+     + +L ++ +    E     EL  +  ++  I   L    +        ++ + 
Sbjct: 392 TKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RIKEVTVKYLKGLL 448

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           E       LG R+T       A  + L+Q
Sbjct: 449 ERHG---HLGERKTQITNFKTAKTSILKQ 474


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+  G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-HGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 184/455 (40%), Gaps = 46/455 (10%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           SN L E  +   SL+  +    L +A+ T++ERAIP L DG KPV R  ++   E     
Sbjct: 104 SNHLTE--LHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQN 161

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
            + F K A + G V    + HG+ S   +   +A  +    P++ G GNFG+     AAA
Sbjct: 162 RSKFNKVAALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAA 221

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RY   R+ Q    I + ++   V        E   P  +    P +LANG  GIA G A
Sbjct: 222 PRYVFCRVHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYA 277

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+I  H+ + + +   A I+   I   +    +  P+F                     G
Sbjct: 278 TNIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEF--------------------SG 313

Query: 249 GFRVRARWCVEEVG----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             R  +   +E  G     G   + +TE+P +  +   +  + +L    +   +   +++
Sbjct: 314 VIRRVSDKTIEVEGLYELSGQTKLTITELPVKFDRLSYVILLDKLKDQGK---IVSYKEQ 370

Query: 305 SAEDVRIVLFPKNRSL-------DPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMP 356
                R  +  K +         +P+   E I  +  +      N+ VL+  G++ +   
Sbjct: 371 HKNGFRFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYEC 430

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI-LKGLLIAYLNIDEIIAIIRNEDKPKP 415
            + ++++++ HRR+    R  +  Q  +   ++         + ID+ I I   +     
Sbjct: 431 AEDVIRDFVEHRRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDEITIKGKQKAELV 490

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
             ++     +   + ++ + +  + + E Y+++ E
Sbjct: 491 QEIASNPDFKGFENELVGMSIYRMTEDETYKLQDE 525


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 683  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 741

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 742  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 799

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 800  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 858

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 859  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 908

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 909  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 958

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 959  VNSVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1018

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1019 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1076

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1077 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1136

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1137 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1184


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 198/528 (37%), Gaps = 45/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 630  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 688

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 689  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 746

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 747  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 805

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 806  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 855

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 856  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 905

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 906  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 965

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 966  RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1023

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1024 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1083

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E +   +S
Sbjct: 1084 QRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDVLAGMS 1131


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 118/187 (63%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   +++P+
Sbjct: 4   VDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ P++FPNLL NG+ GIAVGMAT IP HN++EI   A   +++P+
Sbjct: 4   VDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIEQIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRSGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  +
Sbjct: 182 NNLYKRT 188


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/193 (44%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           MT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           + E+ +  L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+
Sbjct: 61  LNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAK 119

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
             +E+       IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+  
Sbjct: 120 THIEKRAN-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIE 178

Query: 316 KNRSLDPDLLMES 328
             R    ++++ +
Sbjct: 179 LKRDAMSEIVLNN 191


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 7/187 (3%)

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPE 211
           VDF+D Y+  + EPV+ PS+FPNLL NG+ GIAVGMAT IP HN++E+   A   +++P+
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 212 ISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            S E+LL    E I GPDFPTG  I+  R  I ++YR GRG    RA   VEE+ +G  C
Sbjct: 64  ASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRGSITQRAVVNVEEI-QGRQC 121

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLM 326
           +VVTE+PYQV    L +KIA+L+   ++  + DIRDE S    + ++    R     +++
Sbjct: 122 LVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVL 181

Query: 327 ESIFMLS 333
            +++  S
Sbjct: 182 NNLYKRS 188


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/538 (16%), Positives = 187/538 (34%), Gaps = 82/538 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSPLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWY 1135

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDL 492
            L K ++ ++    +    E E +     S    W +       E+  V+    +   +
Sbjct: 1136 LTKEKKDELCKLRNEKEQELETLKR--KSPSDLWKEDLAAFIEELEAVETKEKQEEQI 1191


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 190/534 (35%), Gaps = 79/534 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSPLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREVVNNIRLLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKEADKSDSVADSGPTFNYLLDMPLWY 1135

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKSTD 491
            L K ++ ++    +    E E +     S    W + +A  I E++ + +K   
Sbjct: 1136 LTKEKKDELCKLRNEKEQELETLKR--KSPSDLWKEDLAAFIEELEAVEAKEKQ 1187


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 183/452 (40%), Gaps = 31/452 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++      L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M      
Sbjct: 15  DVYDDAFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKE 74

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K A I G V    + HG+ S  ++   +A  +   YPL+ GQGNFG+     AAA R
Sbjct: 75  KFHKLASIAGGVADLGYHHGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASR 134

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           Y  AR+      + +  +   V      + E   P  +    P +L NG SGIA G AT+
Sbjct: 135 YIFARIGSNFAKVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGVSGIATGYATN 190

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  H+   + +A L ++    ++  K+                E R  +V    +  G +
Sbjct: 191 ILPHSFDSVKKAVLQVLQEKRVTKPKVA-------------YPEFRGEVV---EIEPGSY 234

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R  +           + +TEIPY+  +   + KI + +  K     +D  DE+    +
Sbjct: 235 EIRGTYKF----TSRTQMHITEIPYKYDRETYVAKILDPLEDKGYITYDDDCDENGFGFK 290

Query: 311 IVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHR 368
           + +        + +   E I     +  R   N+ V++     +       ++++++  R
Sbjct: 291 VKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDAVELIRDFVEVR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTE 425
           +  + +R     + I+        L  A    D I  ++  + K + V+        +  
Sbjct: 351 KTFVQKRI--DGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELASNKVYG 408

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
              D ++ + +  +   E  ++  E      E
Sbjct: 409 EYADKLVAMNIFHITSDEAKKLALEAKAKKEE 440


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 170/412 (41%), Gaps = 30/412 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 778  EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGK 835

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQ-DDEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS+N +++      L++      E+L E         G +     +       
Sbjct: 895  TGWSTNIPSYNPKDLVTNIRRLMNG-----EELQEMTPWYKGWGGDLEPMGPQ------- 942

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRD 303
                  + +    +E++      + +TEIP +   + + E +       K  P ++D+ +
Sbjct: 943  ------KFKVSGRIEQIDSN--TVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEE 994

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
                 +R V+   +  +   L +  +     + +    NM     MGR+ +   +  I+K
Sbjct: 995  HHTTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIK 1054

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            ++   R E   +R  +    +  ++ +L         I E    + N+ K +
Sbjct: 1055 DFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQ 1106


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
            [Canis familiaris]
          Length = 1533

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/541 (16%), Positives = 188/541 (34%), Gaps = 82/541 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 683  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 741

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 742  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 799

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 800  DSASPRYIFTMLSPLARLLFPPKDDQTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 858

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 859  TGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFRGTIEELAPNQY 908

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 909  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 958

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 959  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1018

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1019 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1076

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1077 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWY 1136

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDLGR 494
            L K ++ ++    +    E E +     S    W +       E+  V+    +   +G 
Sbjct: 1137 LTKEKKDELCKLRNEKEQELETLKR--KSPTDLWKEDLATFVEELEAVETKEKQEEQIGL 1194

Query: 495  R 495
             
Sbjct: 1195 P 1195


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
            [Canis familiaris]
          Length = 1532

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/541 (16%), Positives = 188/541 (34%), Gaps = 82/541 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSPLARLLFPPKDDQTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +++E+      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFRGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFNYLLDMPLWY 1135

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDLGR 494
            L K ++ ++    +    E E +     S    W +       E+  V+    +   +G 
Sbjct: 1136 LTKEKKDELCKLRNEKEQELETLKR--KSPTDLWKEDLATFVEELEAVETKEKQEEQIGL 1193

Query: 495  R 495
             
Sbjct: 1194 P 1194


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/526 (17%), Positives = 204/526 (38%), Gaps = 60/526 (11%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T V+ ++K +     + +  + +++    ER+IP + DGFKP  R+++    +  L    
Sbjct: 652  TTVDHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNLKNEC 710

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               +    + E     + HG+ S+  +++ +AQ +       L+   G FG+    G  A
Sbjct: 711  KVAQLTGYIAE--HSAYHHGENSLQQTIINMAQDYVGSNNINLLLPCGQFGSRKEGGKDA 768

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            AA RY   +++ +   I    D+  +D++   + +  EP  +    P +L NG  GI  G
Sbjct: 769  AAARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTG 827

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             +T IPS+N  +I +  +  +DN ++                          ++  YR  
Sbjct: 828  FSTFIPSYNPIDIIDNIVNFLDNKDM------------------------NDMIPWYRNF 863

Query: 247  RGGFRVRARWCV-----EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--LLE 299
            +G     ++         E+      +V+TE+P     +   E +  ++   +     + 
Sbjct: 864  KGTVTRNSKLGYDIIGNYELNHSINQLVITELPINRWTNDYREYLNSIMATNKEDEGYIT 923

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPL 357
            D  D S+ +   +    N    PD + + I  +  ++T    +  +L     R+ +    
Sbjct: 924  DYGDFSSNEFIKIKIKLN-DSGPD-ITDDIEKVFKLKTTISTSNMILFDCNKRIKKYNGA 981

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---------- 407
              ILK+++  R +   +R  + ++ +  +++ L   +     I     +I          
Sbjct: 982  IDILKDFITTRVKYYTKRREYMIKQLQLQLQQLSNQIRFINMIINNELVIFRKSKKQIVS 1041

Query: 408  ----RNEDKPKPVMVSRFSLTENQ-VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                 N +  KP         + +  + +L + L SL      ++ +E ++   + +++ 
Sbjct: 1042 ELKRLNFNTYKPEEEEDEEDNDIEGFNYLLKMSLLSLTLDHINKLNNEYNSKQVQLKEL- 1100

Query: 463  SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
             +  +  Q + +    ++E      +     +R     E   ++K 
Sbjct: 1101 -INTTPIQLYKKDLVVLKEQLVQTKQYKPYDKRVKLQPEPIVSEKV 1145


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 102/523 (19%), Positives = 193/523 (36%), Gaps = 41/523 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 677  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLKRNDKREVK 735

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 736  VAQLAGSVAE--HSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLTGGKDAA 793

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 794  SPRYIFTMLSPLARYIFHKHDDALLKHEY-DDNQKIEPVFYVPVIPMILVNGADGIGTGW 852

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +EI E    ++D                D        ++ + +VES     
Sbjct: 853  MTKIPNYNPREIIENLHRMMDGA--------------DPKPMSPYYKNFKGVVESC---- 894

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIP-LLEDIRDE 304
            G +R      +  +G     + +TE+P         E + E  L  +++IP ++ D ++ 
Sbjct: 895  GDYRYVISGEISVIGPDK--LEITELPIGTWTQTYKETVLEPMLHGSEKIPAIITDYKEY 952

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + +     +   NR    +L  E +     +++   +           + +   +  ILK
Sbjct: 953  NTDTAVHFIIILNRDKLLELEREGLHKAFKIQSTTTITSMCAFDENQCLNKYENVIQILK 1012

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             +   R E   +R  +    +    E  K    A   +++    +  E+K K  M++   
Sbjct: 1013 VFYKVRLETYHKRKDYLEGILK--AESAKLSNQARFILEKCDGTLVIENKKKKDMIAELV 1070

Query: 423  LTENQVDAILNLRLR--SLRKLEEYQIKSELD---NLLAEKEKIDSLLNSGK-QQWNQIA 476
                  D ++  +L     + LEE     + +       EKE  D LL         +  
Sbjct: 1071 RRNYDSDPVMVWKLSQNREQVLEEVGEHDDENAPTATAMEKENFDYLLGMTMWTLTKEKK 1130

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             ++   ++         + RT            L +    +E 
Sbjct: 1131 DDLLRQRDEKMAELKRLQVRTPISLWKEDLDNLLTELNKLEEK 1173


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 170/412 (41%), Gaps = 30/412 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 778  EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGK 835

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    ++++   I   +D+    +    +E+  EP  +    P +L NG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQ-DDEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS+N +++      L++      E+L E         G +     +       
Sbjct: 895  TGWSTNIPSYNPKDLVANIRRLMNG-----EELQEMTPWYKGWGGDLEPMGPQ------- 942

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-IAKRIPLLEDIRD 303
                  + +    +E++      + +TEIP +   + + E +       K  P ++D+ +
Sbjct: 943  ------KFKVSGRIEQIDSN--TVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEE 994

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
                 +R V+   +  +   L +  +     + +    NM     MGR+ +   +  I+K
Sbjct: 995  HHTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIK 1054

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            ++   R E   +R  +    +  ++ +L         I E    + N+ K +
Sbjct: 1055 DFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQ 1106


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 200/474 (42%), Gaps = 40/474 (8%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             +  +++   + E  + +++   K R++P L DG K   R++I  + +          + 
Sbjct: 687  KILQLNISTFINEELIKFSIEDCK-RSLPHLIDGLKESQRKVIFGLKQWNGKNNIKVAQL 745

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
               V +     + HG+Q+++D+++++AQ F      PL+   G FG     G  AA+ RY
Sbjct: 746  GAFVAQKTD--YKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKDAASPRY 803

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
                   +   I +  D+  +++  T + E   PV +    P +  NG+ G+  G + +I
Sbjct: 804  IFVNQPPILNKIFRPEDDPILNY--TLDGE---PVFYAPVIPLICINGSVGVGTGFSCNI 858

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N  EI +     I+  E   + + +Y       TG I                G + 
Sbjct: 859  PMFNPSEIIDGLKQWINMREQGEKYVFKYKPWYKGFTGKIEKNG-----------SGRYI 907

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                   E    G +   V+E+P  +   +  E   +   +  I   ++  + +  + +I
Sbjct: 908  SYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYSEVTTVNFKI 967

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRRE 370
                   S + +L +E++ + S + T    NM +     ++ +   L+GI++ +   R +
Sbjct: 968  -------SSEHELTIENLKLRSYIHTS---NMVMFDHEGKIHKYETLNGIMQRFCKERIK 1017

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKP---KPVMVSRFSLTEN 426
            +  +R  + +Q +++ + I +       + +++ I I+  ED+    + + ++ +   E 
Sbjct: 1018 IYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKILLQEDEVVHQQLLDMNYYKDDEG 1077

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            + D +LN+ +   RK    ++ S++D+L  +     +   +  Q W +   E+ 
Sbjct: 1078 EFDYLLNMNIGGFRKKNVDKLISKIDDLKKDIMWYTN--TNEGQMWLKDILELE 1129


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 183/528 (34%), Gaps = 80/528 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQTTMYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLARLLFPSKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          +TE+P +       E++ E ++    K  PL+ D 
Sbjct: 907  VINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1074

Query: 420  RFSLTENQVD----------------------------------------AILNLRLRSL 439
                     D                                         +L++ L  L
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAESGPTFNYLLDMPLWYL 1134

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             K ++ ++  + D    E   +     +    W     ++    E   
Sbjct: 1135 TKEKKDELCKQRDEKEQELNTLKK--KTPSDLW---KEDLAAFVEELE 1177


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 183/528 (34%), Gaps = 80/528 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 680  EDYLYGQTTMYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 738

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 739  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 796

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 797  DSASPRYIFTMLSPLARLLFPSKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 855

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 856  TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQY 905

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          +TE+P +       E++ E ++    K  PL+ D 
Sbjct: 906  VINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 955

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 956  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1015

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1016 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1073

Query: 420  RFSLTENQVD----------------------------------------AILNLRLRSL 439
                     D                                         +L++ L  L
Sbjct: 1074 VLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTFNYLLDMPLWYL 1133

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             K ++ ++  + D    E   +     +    W     ++    E   
Sbjct: 1134 TKEKKDELCKQRDEKEQELNTLKK--KTPSDLW---KEDLAAFVEELE 1176


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 183/528 (34%), Gaps = 80/528 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 680  EDYLYGQTTMYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 738

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 739  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 796

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 797  DSASPRYIFTMLSPLARLLFPSKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 855

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 856  TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQY 905

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          +TE+P +       E++ E ++    K  PL+ D 
Sbjct: 906  VINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 955

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 956  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1015

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1016 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1073

Query: 420  RFSLTENQVD----------------------------------------AILNLRLRSL 439
                     D                                         +L++ L  L
Sbjct: 1074 VLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTFNYLLDMPLWYL 1133

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             K ++ ++  + D    E   +     +    W     ++    E   
Sbjct: 1134 TKEKKDELCKQRDEKEQELNTLKK--KTPSDLW---KEDLAAFVEELE 1176


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/519 (17%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DG KP  R+++    +          + A
Sbjct: 711  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLA 769

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 770  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYI 827

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 828  FTMLSPLARLLFPSVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLP 886

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++  +  G   V
Sbjct: 887  NYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYVVSGEIFV 936

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDV 309
                           + +TE+P +       E++ E ++    K   L+ D ++   +  
Sbjct: 937  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPALISDYKEYHTDTT 986

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 987  VKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1046

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1047 RLHYYSLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYE 1104

Query: 415  -------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                         +    +    + ILN+ L SL K +  ++  
Sbjct: 1105 SDPVKAWKEAQEKAAEEEDSQNANDDASSASGPASGPDFNYILNMSLWSLTKEKVEELIK 1164

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D+   E   +     S    W     ++    E   K
Sbjct: 1165 QRDSKERELNDLKR--KSPSDLW---KEDLAAFVEELEK 1198


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 180/518 (34%), Gaps = 78/518 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 798  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 856

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 857  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 914

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 915  FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 973

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 974  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 1023

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 1024 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 1073

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1074 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1133

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1134 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1191

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    ++NQ D                ILN+ L SL K +  ++  
Sbjct: 1192 SDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1251

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + D    E   +     S    W     ++    E   
Sbjct: 1252 QRDAKGREVSDLKR--KSPSDLW---KEDLAAFVEELD 1284


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/521 (15%), Positives = 182/521 (34%), Gaps = 62/521 (11%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            V+    +    + ++      R+IP + DGFKP  R++++A  +  L       + A  +
Sbjct: 699  VNYSEFINRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYI 757

Query: 80   GEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEAR 135
            GE     + HGD S+  +++ +AQ +       L+   G FG   + G   A+ RY   R
Sbjct: 758  GE--HSAYHHGDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTR 815

Query: 136  MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            + ++A  I    D+  +++    +    EP  +    P +L NG+ GI  G +++I +H+
Sbjct: 816  LEKIARAIFHPDDDALLNYL-NDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHD 874

Query: 196  VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             +E+      +I+       +L+     P F      + +     E   +  G       
Sbjct: 875  PREVIANIKKMING---EEPELM----HPHFAGYTGEITAESGSREGSYIVEGKIE---- 923

Query: 256  WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVL 313
                    G   +++TE+P           +  L+I   K    + D ++   +      
Sbjct: 924  ------RTGDTTLLITELPIGKWTQDYKGFLEGLMIGTDKSPSEISDFKENHTDTTVSFT 977

Query: 314  FPKNRSL--DPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRR 369
               ++      +     +     + T        L  + G++ +      IL+ +  HR 
Sbjct: 978  VTASKDAIDKFEKEKGGLVGKFKLSTTISTKNMTLFDTNGKIHKYKASVDILRTFFHHRL 1037

Query: 370  EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------- 413
            E   +R    ++ + R +++          + +   ++ N  +                 
Sbjct: 1038 EYYVKRKDMLLEKMRRELKVYDNKARFVEEVCKGDLVVSNRKRAELLADLQLRGYDLYPR 1097

Query: 414  ---KPVMVSRFSLT-ENQV---------DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
               K         + E            + +L +++ SL      +++ +      E EK
Sbjct: 1098 EVKKSETEEEDDTSVEEDASDAELAKGYEYLLGMKIWSLTFERAEELRRQKAEKADEVEK 1157

Query: 461  IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            ++    S +  W      I E  +      +   +R    +
Sbjct: 1158 LEG--TSPEAIWMTDLEAIEEALDERDVELNAELKREVQAQ 1196


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 86/514 (16%), Positives = 196/514 (38%), Gaps = 63/514 (12%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            +    T ++ ++  +S    + +  + ++++    R+IP + DG KP  R+I+ A  +  
Sbjct: 664  LYKPGTYLDHSIDKISYPEFVNKELILFSMADNI-RSIPSVVDGLKPGQRKILFACFKRK 722

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--I 121
            L       + +  V E     + HG+ S+  ++  +AQ F       L+  +G+FG    
Sbjct: 723  LTKQLKVSELSGFVSECTA--YQHGESSLQVTITGMAQTFVGSNNVNLLEPEGSFGTRLD 780

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G  AA+ RY    ++  A  +    D+  + +    +++  EP+ +    P +L NG  
Sbjct: 781  GGKDAASPRYIYTLLSPFARKLFPATDDPLLTYNL-DDDKKIEPMWYAPVVPLVLINGAD 839

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP++N +++      L++N     E+L           G +   + +    
Sbjct: 840  GIGTGWSTTIPNYNPEDVVANIRRLMNN-----EELEPMTPWYRDWAGKVEQVAVD---- 890

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                     + +    + ++        V E+P ++      EK+ E+I  ++   ++D 
Sbjct: 891  ---------KFKFSGVINQIDG--VTCEVRELPIKMWTQEFKEKLEEIIKGEK-SFVKDY 938

Query: 302  RDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             D ++   V  ++  ++     + L E +     +      +  V      R+ +   ++
Sbjct: 939  VDYNSPRRVHFIITMESEKHMQEALAEGLVNRFKLTKTIATSNLVAFDPEGRINKYASVN 998

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------ED 411
             ILKE+   R +    R    ++ + +++            I +    +         ED
Sbjct: 999  DILKEFYYIRLKYYQERKDNMLKEMSKQLMKYTNQARFVQMIIKKELAVSGRKRSEIIED 1058

Query: 412  KPKPVMVSRFSLTENQ-------------------VDAILNLRLRSLRKLEEYQIKSELD 452
              K       +  E Q                    + +L + + SL   +  ++  ++ 
Sbjct: 1059 LVKKKFDKISNKAEAQKAGETEDTVEEEDSTVGDGYNYLLGMAIWSLTHEKVQKLLQDVA 1118

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            +   E +++  +  S K  WN    E+    E +
Sbjct: 1119 DKELEVDEL--IKKSPKDLWN---TELDAFIEEW 1147


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 129/206 (62%), Gaps = 6/206 (2%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           M  +F  +D+E  + +N+N++ +   P V  L  IL EWL  RR+ + RR ++R++ + +
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 60

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
           R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE 
Sbjct: 61  RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEM 120

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           +I+ E   L  E++++  +L S ++  N +  E++      + +   G  R +  +    
Sbjct: 121 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADAQAYGDDRRSPLQEREE 174

Query: 506 DKATLQQAMIEKEPITVVISNRGWIR 531
            KA  +  M+  EP+T+V+S  GW+R
Sbjct: 175 AKAMSEHDMLPSEPVTIVLSQMGWVR 200


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 94/600 (15%), Positives = 215/600 (35%), Gaps = 88/600 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +E+ K +S +  +++  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 706  LYQEDTKEISYKSFIDKELILFS-NMDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 764

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LA  F       ++   G FG     G  AA
Sbjct: 765  VAQLAGSVAE--HSAYHHGEVSLMSTIINLAHNFVGSNNINILLPIGQFGTRLLGGRDAA 822

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ V   +    DE  ++F    + +  EP  +    P +L NG  GI  G 
Sbjct: 823  SARYIFTMLSPVTRAMFCTDDEPNLNFLF-EDNQKIEPFWYCPILPLVLVNGCEGIGTGW 881

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P+H+ + + +    L+++     E+LL          G I   +    V    +  
Sbjct: 882  STKVPNHDPRIVVKNLKRLMND-----EELLPMYPWYKNFQGEISTLNASRFVCFGEIAS 936

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
                                + +TE+P         E + E ++     + P+++D ++ 
Sbjct: 937  V---------------DDTTLEITELPIGTWTQNYKESVLEPMLYGADGKQPVIQDFKEY 981

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     +   ++    +     I     ++T    +  VL    G + +      IL 
Sbjct: 982  HTDTTVRFIIRMSKEKMAEANAHGIHKYFKLQTIINSSSMVLFDEHGCLKKFETAKDILI 1041

Query: 363  EWLAHRREVLFRRSSFR------------------MQAID--------RRVEILKGL--- 393
             +   R ++  +R ++                   M+ I+        ++  I++ L   
Sbjct: 1042 SFYKVRLDMYVKRKAYLEGHLEAQANRLKAQARFIMEKIEGVIKIENMKKKHIVEQLVER 1101

Query: 394  ---------------LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                           +     ++E +      ++ +    +   +  +  D +L++ L  
Sbjct: 1102 GYPADPVKKWKEAENMRKLKAMEEFVDETDEANEVEETGANEEDVCLSDYDYLLSMALIR 1161

Query: 439  LRKLEEYQIKSE----LDNLLAEKEKIDSLL--NSGKQQWNQI-ACEIREVKE----IFS 487
            L + E+ ++  +    +D L + K K   +L      +  + +   E+ E +E    +  
Sbjct: 1162 LSEEEKDKLLKDRDVKIDELNSLKAKTPKMLWIEDLDKFLDVLDKHELSEKEEAASAVKG 1221

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
              T     + +     +           E   I   I++    ++ K+  V    ++ +E
Sbjct: 1222 IVTSGKGNKASSRNARKKVSTITAMPESEGIRIPPQITSDLREKAEKADQVKQRMINLRE 1281


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/151 (49%), Positives = 106/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 182/519 (35%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 697  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 755

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 756  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 813

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 814  FTMLSSLSRLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 872

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 873  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 922

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 923  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 972

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 973  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1032

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1033 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1090

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1091 SDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1150

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D+   E   +     S    W     ++    E   K
Sbjct: 1151 QRDSKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1184


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 194/512 (37%), Gaps = 65/512 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T V+ ++K +     + +  + +++    ER+IP + DG+KP  R+++    +  L 
Sbjct: 648  EHGTTVDHSIKKLRYTDFINKELIQFSIYD-TERSIPSVVDGWKPGQRKVLFGCLKRNLV 706

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +    V E     + HG+ S+  +++ +AQ F       ++   G FG+    G
Sbjct: 707  GECKVAQLTGYVAE--HSAYHHGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGG 764

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY   ++  +  LI    D++ ++++     +  EP+ +    P +L NG+ GI
Sbjct: 765  KDASAARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGI 823

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N  +I +     ++N       +   +      TG I    +       
Sbjct: 824  GTGFSSQIPNYNPLDIIDNLKRYLNNV-----DMKPMVPWYHKFTGEIEPNDK------- 871

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRIPLLED 300
                GGF     +   +       + +TE+P +         +E + + +   + PL+  
Sbjct: 872  ----GGFDCLGNYQWLDEN---GLLEITELPIRKWTHDYRVFLESLEQGVN-GKEPLILG 923

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
              D S  +        N     +++ E +  +  + T        L  +  ++ +     
Sbjct: 924  FVDNSTHESVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNEL 983

Query: 359  GILKEWLAHRREVLFRRSSFR---MQAIDRRVEILKGLLIAYLN---------------- 399
             I++++ A R     +R ++    ++ + RR+      +   +N                
Sbjct: 984  EIIRDFAAVRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNEELVLFKKAKATLVAE 1043

Query: 400  -----IDEIIAIIRNEDKP----KPVMVSRFSLTEN----QVDAILNLRLRSLRKLEEYQ 446
                  D    I++  ++P    +PV  SR S T++      + +LN+ L SL   +  +
Sbjct: 1044 LRDLGFDSNTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQK 1103

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +  E      +   +     +     +    E
Sbjct: 1104 LNEEHAQKENQLRILLETTATDMWMDDLNKVE 1135


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 82/185 (44%), Positives = 126/185 (68%), Gaps = 2/185 (1%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202
           +L+ +D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ + 
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 60

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
            L LIDN E S+E+++++I GPDFPTGGI +  ++ I+E+YR GRG  +VRA+  +E+  
Sbjct: 61  LLYLIDNKESSLEEIMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKVRAKTHIEKRA 119

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
                IV+ E+PYQ  K+RLIE+IA+L   K+I  + ++RDES  +   V+    R    
Sbjct: 120 N-KDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMS 178

Query: 323 DLLME 327
           ++++ 
Sbjct: 179 EIVLN 183


>gi|226327144|ref|ZP_03802662.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
 gi|225204362|gb|EEG86716.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
          Length = 270

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 146/206 (70%), Gaps = 2/206 (0%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLME 327
           +T +P+QV  ++++E+IA L+ AK++PL+ED+RDES  +   R+V+ P++  +D + +M 
Sbjct: 2   ITALPHQVSGAKVLEQIAALMRAKKLPLVEDLRDESDHENPTRLVIVPRSNRVDLEQVMY 61

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
            +F+ +D+E  + +N+N++ +   P V  L  IL EWL +RR+ +  R + R++ + RR+
Sbjct: 62  YLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYRRQTVTNRLNHRLEKVLRRL 121

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           EILKGLLIAYLNIDE+I IIR+ED+PK  ++ RF L++ Q +AIL LRLR L KLEE ++
Sbjct: 122 EILKGLLIAYLNIDEVIEIIRHEDEPKAELMRRFELSDIQAEAILELRLRHLAKLEEIKL 181

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWN 473
           K+E D L  E++ I+ LL+S ++   
Sbjct: 182 KAESDELEKERDSIEKLLSSPRRLNT 207


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 93/413 (22%), Positives = 178/413 (43%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKD-DDGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  EI      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEIISNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ +    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFVSHGRYEI----RPDGVVCITELPIGVWTQAYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFN--KEGQITKYSDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            KE+   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 118/167 (70%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           +  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           + V F   +++ + EP V P+ FPNLL N +SGI+ G AT IP HN+
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNL 167


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 89/149 (59%), Positives = 119/149 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           +  P V P+K PNLL NG+SGIAVGMAT 
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMATK 149


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/180 (43%), Positives = 122/180 (67%), Gaps = 2/180 (1%)

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           D+D VDF   Y++  SEP V P++ PNLL NG+SGIAVGMAT+IP H++ E+ +  L L+
Sbjct: 1   DKDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLL 60

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           D+ + S+E L+++I GPDFPTGGI +  ++ I+E+YR GRG  ++RA+  +E+       
Sbjct: 61  DHKDASLEDLMQFIKGPDFPTGGI-IYGKKGIIEAYRTGRGRVKIRAKTHIEK-KSNKDI 118

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           IV+ E+PYQ  K+RLIE+IAEL+  K+I  + ++RDES  +   V+    R    ++++ 
Sbjct: 119 IVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLN 178


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
            caballus]
          Length = 1630

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 718  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 776

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 777  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 834

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 835  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 893

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      +++  +            P  P       + + + ++     G   V
Sbjct: 894  NYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 943

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 944  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 993

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 994  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1053

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1054 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1111

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1112 SDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1171

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1172 QRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1205


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/541 (16%), Positives = 188/541 (34%), Gaps = 82/541 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L++ L  
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKGDSVTDSGPTFNYLLDMPLWY 1135

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDLGR 494
            L K ++ ++    +    E + +     S    W +       E+  V+    +   +G 
Sbjct: 1136 LTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKEDLAAFVEELEAVEAKEKQDEQVGL 1193

Query: 495  R 495
             
Sbjct: 1194 P 1194


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 107/151 (70%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           +++  VS+   L+  YL YA+S I  RA+PD+RDG KPVHRR++ +M +    +     K
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           RM ++ + +L  +D++ VDF   Y+ ++  P
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/148 (54%), Positives = 113/148 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           + + YL YA+S I  R +PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            ++E+ V+F   Y+  + EP+V P++FP
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 881

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 882  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 931

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 932  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 981

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 982  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1041

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1042 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1099

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1100 SDPVKAWKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1159

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1160 QRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1193


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 180/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 846  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 904

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 905  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYI 962

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 963  FTMLSTLARLLFPSVDDNLLKFLY-DDNQRVEPEWYMPIIPMVLINGAEGIGTGWACKLP 1021

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + I ++     G   V
Sbjct: 1022 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQEIGQNQYAVSGEIFV 1071

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 1072 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 1121

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1122 VKFVVKMTEEKLVQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1181

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1182 RLNYYSLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYE 1239

Query: 415  ----------PVMVSRFSLTENQ---------------VDAILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ                + ILN+ L  L K +  ++  
Sbjct: 1240 SDPVKAWKEAQEKAAEEEETQNQRDDSSSDSGTTSGPDFNYILNMSLWCLTKEKVEELIK 1299

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1300 QRDTKGRELNDLKR--KSPSDLW---KEDLAAFVEELDK 1333


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 189/446 (42%), Gaps = 28/446 (6%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           +L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++H   ++       F K A I G
Sbjct: 7   NLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLASIAG 66

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ S  D+   +A  +   YPL+ GQGNFG+     AAA RY  AR+++  
Sbjct: 67  GVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARVSKNF 126

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             + +  +          ++E   P  +    P +L NG SGIA G AT+I  H+ + + 
Sbjct: 127 YNVYKDTEYAPAH----EDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPHSFKSVK 182

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +A L  +    ++  K    +  P+F      V+ R  I  +Y+                
Sbjct: 183 KAVLQALQGKNVTKPK----VEFPEFRGEVHEVDGRYEIHGTYKFTS------------- 225

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRS 319
                  + +TEIPY+  +   + K+ + +  K +   ED   E     ++      +  
Sbjct: 226 ----RTQMQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCGEHGFGFKVKFRKEYSLP 281

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            D +L  E I     +  R   N+ V++   ++     +  ++K+++  R+  + +R   
Sbjct: 282 DDEELRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLIKDFVEVRKTYVQKRIDN 341

Query: 379 RMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           ++   ++  ++           I   I I     K     +++  + +  VD ++ L + 
Sbjct: 342 KILESEKAFKLAFAKAHFIKKVISGEIVIQGKTRKALTEELAQIEMYKEHVDKLVGLNIF 401

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDS 463
            +   E  ++  E      E E   S
Sbjct: 402 HITSDESRKLAEEAKAKKEENEYWKS 427


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
            [Macaca mulatta]
          Length = 1481

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 649  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 707

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 708  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 765

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 766  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 824

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 825  TGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 874

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 875  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 924

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 925  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 984

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 985  ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1042

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1043 VLIQRGYDSDPVKAWKEAQ 1061


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
            Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 699  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 757

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 758  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 815

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 816  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 874

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 875  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 924

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 925  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 974

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 975  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1034

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1035 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1092

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1093 SDPVRAWKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1152

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1153 QRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
            cuniculus]
          Length = 1181

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSPLARLLFPPKDDHTLRFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VINGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILK++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILKDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQ 1094


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 170/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     H  G+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 115/147 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM  +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQPF  RY L+ GQGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +  P V P++ PNLL NG+SGIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/507 (16%), Positives = 175/507 (34%), Gaps = 72/507 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++   +S    +    + ++ +   +R+IP + DG KP  R+I++A  +  L  
Sbjct: 668  PGTFLDQSADRISYSDFINRELILFSRAD-LDRSIPSMLDGLKPGQRKILYACFKRNLKK 726

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E     + HG+ S+  ++V LAQ F       L+   G FG     G 
Sbjct: 727  DIKVAQLSAYVAE--HSAYHHGEGSLASTIVNLAQDFVGSNNVNLLHPSGQFGTRLQGGK 784

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R+  +   +    D+  + +      +  EP  +    P +L NG  GI 
Sbjct: 785  DAASARYIYTRLAALTRHLFNENDDQLLTYL-NEEGQSIEPEWYMPILPTVLINGADGIG 843

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IP++N ++I      L++                             +I E+  
Sbjct: 844  TGWSTTIPNYNPRDIMANLRRLLEGEAQE-------------AMHPWYRGFNGNIAEAAT 890

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------IIAKRIPLL 298
               G         V +   G   I +TE+P +       E +  L      +     P++
Sbjct: 891  HKSGSRSYVVSGTVTQT--GPNTIEITELPIRKWTQDYKEFLETLLRPTEKVRRDEAPII 948

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLL-----MESIFMLSDMETRFPLNMNVLSMGRVPQ 353
             D  +  ++     +         +LL     ++  F L+       + +     G +  
Sbjct: 949  ADYSEHHSDSNVHFVVELLPGKMEELLASPGGLDGKFKLTTKIATSNMMLFD-HSGMIKH 1007

Query: 354  VMPLDGILKEWLAHRREVLFRRS------------------SFRMQAIDRRVEILKGLLI 395
                + I+ E+   R +   +R                    F +  ++ R+E+ +G   
Sbjct: 1008 YSSPEMIVAEFYELRLDYYEKRRIAMLKVASLDQKRADNRIRFILAVVEGRLEV-RGRKR 1066

Query: 396  AYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN------------------QVDAILNLRLR 437
            A L  D          K    +  R +                        D +L++ + 
Sbjct: 1067 ADLERDLEAQGFDRLGKAGAKVKVRITEVAEDGEEGEGGEAAVTASNGASYDYLLSMSIY 1126

Query: 438  SLRKLEEYQIKSELDNLLAEKEKIDSL 464
            +L + +  +++ E        E + S+
Sbjct: 1127 NLTREKIAKLQEEAAKAKERVEYLCSI 1153


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 20/257 (7%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            R    ++++ ++F  + ME  F + M  ++    P+V  L  +LK +L HR+ V+ RR+
Sbjct: 1   KRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKE-PKVFSLLELLKLFLNHRKTVIIRRT 59

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433
            F +Q    R  IL+GL IA  NID +I +I+        +  ++++F L+E Q +AIL+
Sbjct: 60  IFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILD 119

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L  LE  ++++EL  +L   EK+D++L S     N I  E+ E+K  F       
Sbjct: 120 MRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCP---- 175

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545
                  ++         + +I  E + V I++RG+I+          K       A+  
Sbjct: 176 ----RITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTT 231

Query: 546 KEGDSLKIALHAHTTDR 562
            + D ++      + D 
Sbjct: 232 YDDDFIESFFTCMSHDT 248


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 170/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 658  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 716

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     H  G+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 717  SELKVAQLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 774

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 775  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 833

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 834  GTGWSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  ------LRYRMYGRIEQI--GDNILEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 933

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 934  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 993

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 994  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1051


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 109/608 (17%), Positives = 209/608 (34%), Gaps = 90/608 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E+  + VS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 724  LYEKETRDVSFSDFVNVELVLYSNYDNV-RSIPNMMDGFKPGQRKVLFTCLKRNDKREVK 782

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 783  VAQLAGSVAE--HSAYHHGETSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSA 840

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A  I    D+  + +    + +  EPV +    P +L NG  GI  G 
Sbjct: 841  SPRYIFTMLSPLARYIFHKHDDPLLKYEY-DDNQRIEPVYYVPVIPMVLVNGADGIGTGW 899

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +EI E    +++  +            P  P         ES  +   +  
Sbjct: 900  MTKIPNYNPREIIENLQRMMEGAD----------PKPMIPYYKNFKGVVESCGDFRYVIS 949

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   V     VE          +TE+P         E + E ++    K   ++ D ++ 
Sbjct: 950  GEISVIGPDKVE----------ITELPIGTWTQAYKETVLEPMLHGTEKTPAIITDYKEY 999

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + +     +   NR    +L  + +     ++T   +           + +   +  ILK
Sbjct: 1000 NTDTAVHFIVMMNRDKLVELERDGLHKTFKLQTTMTITSMCAFDENQCLNKYESVVQILK 1059

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
             +   R +   +R  +    +    E  K    A   +++  + +  E+K K  M++   
Sbjct: 1060 GFYKVRMDTYHKRKDYLEGILQ--AEAAKLSNQARFILEKCDSTLVIENKKKKDMIAELV 1117

Query: 421  -----------FSLTEN-------------------------QVDAILNLRLRSLRKLEE 444
                       + L++N                           D +L + + SL + ++
Sbjct: 1118 RRNYESDPVVSWKLSQNREQVLEEAVENDEESTPTTSTMEKENFDYLLGMTMWSLTREKK 1177

Query: 445  YQIKSELDN-------------LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
              +  + D              +   KE +D+LL    +  ++   E  + K+   K   
Sbjct: 1178 EDLLRQRDEKIAELKRLQARTPIDLWKEDLDNLLTELNKVEDKEQKEQMKTKQTVKKPPS 1237

Query: 492  LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
                +               +  IEK  I       G    +K   V       +E D  
Sbjct: 1238 RFYSKMEDTRRIVPVINVELKKKIEKADIVSKDKKEG----IKKSRVKKEQTSVEEKDEF 1293

Query: 552  KIALHAHT 559
               + ++T
Sbjct: 1294 DTLVDSNT 1301


>gi|332847785|ref|XP_003315524.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha [Pan
            troglodytes]
          Length = 1500

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 651  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 709

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 710  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 767

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 768  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 826

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 827  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 876

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 877  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 926

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 927  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 986

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 987  ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1044

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1045 VLIQRGYDSDPVKAWKEAQ 1063


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 181/518 (34%), Gaps = 78/518 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 688  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 746

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 747  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 804

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ ++ L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 805  FTMLSSLSRLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 863

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 864  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 913

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 914  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 963

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 964  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1023

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1024 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1081

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1082 SDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1141

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + D+   E   +     S    W     ++    E   
Sbjct: 1142 QRDSKGREVNDLKR--KSPSDLW---KEDLAAFVEELD 1174


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 178/413 (43%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMQVARAIFHPADDFVVEYKD-DDGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  EI      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEIISNLERLMQGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ +    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFVSHGRYEI----RPDGVVCITELPIGVWTQTYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFN--KEGQITKYSDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            KE+   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 683  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 741

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 742  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 799

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 800  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 858

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 859  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 908

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 909  VISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDY 958

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 959  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1018

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1019 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1076

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1077 VLIQRGYDSDPVKAWKEAQ 1095


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 197/528 (37%), Gaps = 46/528 (8%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 706  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 764

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 765  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 822

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A  +   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 823  FTMLSSLAR-LFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 880

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 881  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 930

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 931  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 980

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 981  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1040

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++        +
Sbjct: 1041 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1098

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-----KIDSLLN-SGKQQWNQIACEIRE 481
             D +   +    +  EE + +++ D+  ++         + +LN S      +   E+ +
Sbjct: 1099 SDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1158

Query: 482  VKEIFSKSTDLGRRRTTFCEVSRADKATLQQ----AMIEKEPITVVIS 525
             ++   +  +  +R++          A +++       E+E I   +S
Sbjct: 1159 QRDAKGRDVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDILAGMS 1206


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/444 (26%), Positives = 202/444 (45%), Gaps = 70/444 (15%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           LR   +  +L YA   I ERA+P++ DG KPV RRI+H+   M L     F K A IVG 
Sbjct: 47  LRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHS---MKLLDDGRFNKVANIVGN 103

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVA 140
            +   HPHGD S+Y++LV+L Q  +    L+  QGN+GN + G  AAA RY EAR++Q A
Sbjct: 104 TMQ-FHPHGDASIYEALVQLGQKEL----LVETQGNWGNTLTGAGAAAGRYIEARLSQFA 158

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             ++             YN + +E  +              GIAVG+++ I  HN  EI 
Sbjct: 159 LDVV-------------YNPKVTEWTL-----------SAEGIAVGLSSKILPHNFNEII 194

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           +AA++ +     +        + PDF TGG I  SR      Y  G  G  V+ R  +E+
Sbjct: 195 DAAISYLRGEPFT--------LYPDFFTGGSIDVSR------YNDGERGGVVKIRAKIEK 240

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +      + +TEIPY    + LIE I +   A +I  +  + D +A+   ++++      
Sbjct: 241 IDNK--TLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQTANVIVYLLP-GT 296

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             D  +++++  +D E     N  V+S  +    + +  +L+  +   R++L +    ++
Sbjct: 297 SSDKTIDALYAFTDCEVSVSPNCCVISDNKPH-FIGVSDVLRHNVDRTRDILGQELRIQL 355

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
             +  ++               +  I   E   K         +EN+  AI ++R   L 
Sbjct: 356 GEVREQLHFAS-----------LERIFIEERIYKDKGYEE---SENREQAIAHIR-GRLE 400

Query: 441 KLEEYQIKSELDNLLAEKEKIDSL 464
           K ++  I+   D+   +  ++  +
Sbjct: 401 KFKDIFIREVTDD---DIIRLFEI 421


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
            cuniculus]
          Length = 1667

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 180/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++               + A
Sbjct: 754  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCLNRNDKREVKVAQLA 812

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 813  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 870

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 871  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 929

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 930  NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 979

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 980  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 1029

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1030 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1089

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1090 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1147

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    T+NQ D                ILN+ L SL K +  ++  
Sbjct: 1148 SDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1207

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1208 QRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1241


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQ 1094


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/173 (45%), Positives = 114/173 (65%), Gaps = 1/173 (0%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +S+S  L  + V+  SL    E+ YL Y++  I +RA+P + DG KPV RRII+AMSE+G
Sbjct: 1   MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQGN+G   D  
Sbjct: 61  LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           S AA RYTEAR+++ +E++L  + +   D+   ++    EP V P++ PN+L 
Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILL 173


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
            gallopavo]
          Length = 1688

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DG KP  R+++    +          + A
Sbjct: 777  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLA 835

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 836  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYI 893

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 894  FTMLSPLARLLFPSVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLP 952

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++  +  G   V
Sbjct: 953  NYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYVVSGEIFV 1002

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDV 309
                           + +TE+P +       E++ E ++    K   L+ D ++   +  
Sbjct: 1003 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPALISDYKEYHTDTT 1052

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 1053 VKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1112

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1113 RLHYYSLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYE 1170

Query: 415  -------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                         +  S +    + ILN+ L SL K +  ++  
Sbjct: 1171 SDPVKAWKEAQEKAAEEEDPQNPNDDASSASGSTSGPDFNYILNMSLWSLTKEKVEELIK 1230

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
              D+   E   +     S    W     ++    E   K
Sbjct: 1231 HRDSKERELNDLKR--KSASDLW---KEDLAAFVEELEK 1264


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
            180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/535 (17%), Positives = 193/535 (36%), Gaps = 75/535 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               L   + + +S    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 702  EQYLYGTSTRHLSYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCVKRNDKR 760

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E+    + HG+Q++  ++V LAQ F       ++   G FG     G 
Sbjct: 761  EVKVAQLAGSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVNILQPLGQFGTRINGGK 818

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +A+L+   VD   + F    + +  EP  +    P +L NG  GI 
Sbjct: 819  DAASPRYIFTMLSPLAKLLFPAVDSSLLKFLY-DDNQKVEPEWYIPIIPMVLVNGAEGIG 877

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G A  IP+++ +EI      ++++ +            P  P+      +   + ++  
Sbjct: 878  TGWACKIPNYDPREIVNNINRMLNHQD----------PLPMLPSYKNFKGTIHELGQNQY 927

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            L  G   V               I ++E+P +       E + E ++    K  PL+ D 
Sbjct: 928  LVSGEVSVL----------DKNTIEISELPVRTWTQAYKESVLEPMLQGTDKTPPLISDY 977

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            ++   +     +               +  +  +++    N  VL      + +   +  
Sbjct: 978  KEYHTDTTVKFVVRMTEEKLAQAEAAGLHKVFKLQSSLTCNSMVLFDHMGCMKRYESVQE 1037

Query: 360  ILKEWLAHRREVLFRRS------------------SFRMQAIDRRVEI----LKGLLIAY 397
            ILKE+   R      R                    F ++ I+ ++ I     + L+   
Sbjct: 1038 ILKEFFELRLHYYKLRKDWLVGSLGAESAKLSNQARFVLEKIEGKLSIENKSKRDLIRML 1097

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFS--------------LTENQVDAILNLRLRSLRKLE 443
            +        +   +K +   +                   +    + ILN+ L  L K +
Sbjct: 1098 VQRGYESDPVAAWNKAQEKSLEEEDGGGNDSDSSVDSGSFSGPNFNYILNMPLWCLTKEK 1157

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGR 494
              ++  + D   AE  ++ S   + +  W         E+  V+E   +S +LG+
Sbjct: 1158 VEELLKQRDLKKAELNELQS--KTSENLWREDLAVFIEELDRVEEQEKESVNLGK 1210


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQ 1094


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/152 (48%), Positives = 104/152 (68%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
               ++E YL Y++S I  RA+PD+RDG KP  RR++ AM ++ L  GA  +K A+I G+
Sbjct: 1   FEDEMKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
             G  HPHG+  +Y +LVR+AQ +V  Y L+ GQGNFG+IDGD  AA RYTEAR+T+ + 
Sbjct: 61  TSGDYHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASM 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            +++ +D++ V++   YNE   EP VFPSKFP
Sbjct: 121 ALMEDLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/508 (18%), Positives = 190/508 (37%), Gaps = 59/508 (11%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                   +++  K +     + +  + ++++   +R+IP + DG KP  R+I+ +  +  
Sbjct: 629  QFEPGVHLDQKEKLIKYSDFVHKELIQFSMAD-LQRSIPSMVDGLKPGQRKILFSSFKRN 687

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG  N+
Sbjct: 688  FVKEAKVAQFSGYVSE--HSAYHHGEQSLASTIIGMAQDFVGSNNINLLQPNGQFGTRNL 745

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   R++ +   +    D+  +D+    + +  EP  +    P +L NG+ 
Sbjct: 746  GGKDHASARYIYTRLSPITRFLFSKDDDRLLDYL-NEDGQSIEPTWYVPIIPTVLVNGSE 804

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G ++ IP++N ++I      L+D   +               TG I    +ES   
Sbjct: 805  GIGTGWSSYIPNYNPRDIVANVRRLLDGDAMVPMD-----PWYRGFTGTIEKTVKES--- 856

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRIPLL 298
                   G    A   +EEV      + ++E+P +         +E I+E     + P +
Sbjct: 857  -------GVSYTACGIIEEVS--ETSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFI 907

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMP 356
            E     S      ++             E +     + T    +   L   +  + +   
Sbjct: 908  EGFTQHSDHSTVDIIVHLREEKLMAAKQEGLLKKFKLTTSISTSNMHLFDRKGVIKKYDT 967

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413
             + IL+++   R E   +R    ++ ++  +  L+  +   L +     I+ N  +    
Sbjct: 968  PEQILEDFFHLRLEFYEKRKKVLLEDLELELLKLENKVRFILGVVNGEIIVSNRKRADLF 1027

Query: 414  ---------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE- 457
                           K +       TEN  DA       S   +E+    S+ + L++  
Sbjct: 1028 LELQQKGFTPFPKKTKALEPEVAGATENTEDA----EENSEAAIEKGARISDYEYLISMA 1083

Query: 458  -----KEKIDSLLNSGKQQWNQIACEIR 480
                  E++ +LL    +   ++  E+R
Sbjct: 1084 IGTLTIERVQALLADRDKANAEV-DELR 1110


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 699  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 757

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 758  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 815

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 816  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 874

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      +++  +            P  P       + + + ++     G   V
Sbjct: 875  NYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 924

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 925  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 974

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 975  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1034

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1035 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1092

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    ++NQ D                ILN+ L SL K +  ++  
Sbjct: 1093 SDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1152

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1153 QRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 181/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 699  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 757

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 758  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 815

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 816  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 874

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      +++  +            P  P       + + + ++     G   V
Sbjct: 875  NYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 924

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 925  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 974

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 975  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1034

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------ 415
            R      R  + +  +    E  K    A   +++I   I  E++ K             
Sbjct: 1035 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1092

Query: 416  -----------VMVSRFSLTENQVD---------------AILNLRLRSLRKLEEYQIKS 449
                          +    ++NQ D                ILN+ L SL K +  ++  
Sbjct: 1093 SDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1152

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1153 QRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 188/466 (40%), Gaps = 32/466 (6%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
            N S   + V+ N     L   +    LAYA+ T++ RAIP+L DGFKPV R +++   E
Sbjct: 10  VNFSTIKSGVQMNSVDRELDSIINNEALAYAIYTVENRAIPNLMDGFKPVQRFMVYRALE 69

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           M       F K A + G V    + HG+ S  ++   +A  +   +P + GQGNFG+   
Sbjct: 70  MAKGNHQKFHKLASVAGGVADAGYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLV 129

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             AAA RY   R++     + + ++          +EE   P  +    P +L NG  GI
Sbjct: 130 QEAAASRYIFCRISDNFRKVFKDIEIAPQH----EDEEHLPPKHYLPVIPTVLLNGVRGI 185

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
           A G +TSI  H+++ + E     +        ++                +   +IV   
Sbjct: 186 ATGYSTSILPHSLESVIECTRLALQGKLDKEPEVA-------------FPQFNGNIV--- 229

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           +   G + ++  +           + ++EIPY   +++ +EK+ + +  K    +    D
Sbjct: 230 KTEDGKYELQGVYKF----TSKTQMYISEIPYSFDRAKYVEKVLDPLEDK--GFITYDDD 283

Query: 304 ESAEDVRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLD 358
            S       +  +     P+   L+ E I     +  + P  + V+        +     
Sbjct: 284 CSKHGFGFKVKFRKDYKLPEDEGLMHEKIMRDFKLTEKVPQYIVVIDENGKLNDKFENAS 343

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVM 417
            ++K ++  R++ +  R  F +   +R+ ++     +    ++    +I+ + K +    
Sbjct: 344 DLIKYFVEVRKKYVKGRIEFMINKTERQFKLAIAKAMFIKTVNNGETVIKGKKKSELKEE 403

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +S+ S+ +   D +L + L  L   E  +++        E +    
Sbjct: 404 LSKISVFQGFEDQLLAMNLYHLTDDEVVRLREAAHAAKTELDYWKE 449


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 178/413 (43%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+ QVA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMQVARAIFHPADDFVVEYKD-DDGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  EI      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEIISNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ +    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFISHGRYEI----RPDGVVCITELPIGVWTQAYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFN--KEGQITKYSDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            KE+   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 161/412 (39%), Gaps = 31/412 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 735  EGTFVDHNASSLSYADFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 793

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V EV    + HG+ S+  ++V +AQ F        +   G FG+    G 
Sbjct: 794  EIKVAQLAGYVAEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGK 851

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ GI 
Sbjct: 852  DASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEGIG 910

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++ E          I  E++           G I   S         
Sbjct: 911  TGWSSFVPNYNPRDVIENLRRY-----IDGEEMQRMTPWYRGFRGKIEENS--------- 956

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDIR 302
                GF       VE+ G G     +TE+P +       E + E +    KR  L+ D R
Sbjct: 957  -AGTGFETSGL--VEKCGEG--AFEITELPIKKWTQDYKEWLEENLPTAEKRDTLIADYR 1011

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGI 360
            D S+ +        +         E +     ++T        L      V +      I
Sbjct: 1012 DCSSHEEIHFTVKVSEERLERPEREGLEKYFKLKTSLSTTNLTLFDPHGRVQRYANELEI 1071

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +KE+   R +   RR ++ +  +++   IL   L   L +     II N+ K
Sbjct: 1072 IKEFAPIRLDFYHRRKAYCLAMLEKSRRILSNRLRFILAVVNGQLIINNKRK 1123


>gi|291533756|emb|CBL06869.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 11/219 (5%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQ 600
           +  KE D ++  +   T + IL  +  G  Y L    +        G AI  L+ L   +
Sbjct: 1   MGTKEEDYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEE 60

Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656
            I        +     L + +  G       SE   N +K G   L +   +++  V   
Sbjct: 61  TITAIIPIKEFSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGVKLT 120

Query: 657 TGDHVAVV-GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWID 713
            G+   ++   +   + F+   +  M R  +GV     K  G   VI    I +    + 
Sbjct: 121 DGNRQIIIGTRDGMSICFNEQDVRPMGRTARGVIGIKLK--GEDTVIGMDNIRDDCEVLT 178

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                + +           RGG+G +  K   ++G  + 
Sbjct: 179 VTEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIG 217



 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 14/219 (6%)

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKIAL 555
                A +      K+    + +  G ++       D +       AL  KE D L    
Sbjct: 59  EETITAIIPIKEFSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGVK 118

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                 +I++ + DG +      ++         +   I L     ++        C++L
Sbjct: 119 LTDGNRQIIIGTRDGMSICFNEQDVRPMGRTARGVIG-IKLKGEDTVIGMDNIRDDCEVL 177

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLL 671
            V+  G       SE    TR G   + +   EK   V+ +    +     ++     ++
Sbjct: 178 TVTEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIGIKVVDSQQEFMLISTEGIVI 237

Query: 672 IFSIDQIPEMSR-GKGVRLQSYK-DGGISDVICFKICEG 708
             +I+++  + R  +GV++ +   +  ++ +  F+I E 
Sbjct: 238 RSNIEEVSVIGRNTQGVKMMNMDNNDKVAALAAFEIKED 276


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 171/409 (41%), Gaps = 31/409 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N+  + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 726  PGTHLDPNLTEIPISDFINQELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNLKS 784

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E  G  + HG+QS+  +++ LAQ F       L+   G FG     G 
Sbjct: 785  EIKVAQLSGYVSEKTG--YHHGEQSLVQTIIGLAQNFVGSNNINLLKPNGAFGTRAAGGK 842

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +A RY    ++++   I   +D+    +    +E+  EP  +    P LL NG+ GI 
Sbjct: 843  DFSAARYIFTEISKITRAIFNPLDDPIYTYVQ-DDEQSVEPEWYLPVIPMLLVNGSEGIG 901

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T+IPS+N  ++ +    L++   +   K            G I     +       
Sbjct: 902  TGWSTNIPSYNPLDLVDNIRRLMNGEPMEEMK-----PWFKGWEGTIEPNGPD------- 949

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-IAELIIAKRIPLLEDIRD 303
                  + +    ++++      + +TEIP +   + + E  +A L   K    ++D+ +
Sbjct: 950  ------KYKVVGKIDQID--ETTVEITEIPVKTWTNNVKEFLLAGLGNEKTPAWIKDMEE 1001

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
            +   ++R V+      +   L +  +     + +    NM     +GR+ +      IL+
Sbjct: 1002 QHGLNIRFVVKMSPDEMAKALKVGLLEKFKLISSISMSNMVAFDPLGRIKRYSSAQEILR 1061

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNE 410
            ++   R E   +R  F M  +  ++ +  +      + ID+ +++   +
Sbjct: 1062 DYYYVRLEYYQKRKDFMMDELQNQLTKFSEQARFVKMIIDKQLSVSNKK 1110


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 164/439 (37%), Gaps = 35/439 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682  EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799  DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 858  TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 907

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 908  VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 957

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 958  REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 1017

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL++    R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1018 ILRDLFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075

Query: 420  RFSLTENQVDAILNLRLRS 438
                     D +   +   
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQ 1094


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 174/457 (38%), Gaps = 39/457 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ +AVS    +    + Y+      R+IP++ DGFKP  R+++    +        
Sbjct: 675  LYEKDTRAVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLKRNDRREVK 733

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 734  VAQLAGSVAE--HSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 791

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A  I    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 792  SPRYIFTMLSPLARYIFHKHDDALLKHEY-DDNQKIEPVFYIPVIPMVLVNGADGIGTGW 850

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +EI E    ++D                D        ++ + +VES     
Sbjct: 851  MTKIPNYNPREIIENLQRMMDG--------------IDPKPMTPYYKNFKGVVESC---- 892

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIP-LLEDIRDE 304
            G FR      +  +G     + +TE+P         E + E  L  + + P ++ D ++ 
Sbjct: 893  GDFRYVISGEISVIGPDK--LEITELPIGTWTQTYKETVLEPMLHGSDKTPAVITDYKEY 950

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + +     +   NR    +L  + +     ++T   +           + +   +  ILK
Sbjct: 951  NTDTAVHFIVMLNRDKLLELEKDGLHKAFKIQTTMTITSMCAFDENQCLNKYDSVIQILK 1010

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             +   R +   +R  +    +    E  K    A   +++    +  E+K K  M++   
Sbjct: 1011 RFYKVRMDTYHKRKDYLEGVLQ--AEAAKLSNQARFILEKCDGTLVIENKKKKDMIAELV 1068

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                + D ++  +L         Q+  E+     E  
Sbjct: 1069 RRNYESDPVVAWKLSQ----NREQVLEEVAENDDENA 1101


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/521 (16%), Positives = 191/521 (36%), Gaps = 57/521 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T ++   + +     + +  + ++ + +  R+IP + DGFKP  R+++ +  +  L 
Sbjct: 664  EPGTFLDMTGEDIRYDEFINKELILFSRADLL-RSIPSMVDGFKPSQRKVLFSCFKRKLK 722

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + +  V E     + HG+ S+  ++V LAQ F       L+   G FG     G
Sbjct: 723  SDIKVAQLSGYVSE--HSAYHHGEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQGG 780

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   R+ +V   +    D+  +++ D  + +  EP  +    P +L NG  GI
Sbjct: 781  KDHASPRYIFTRLHEVCRAMFPECDDALLNYLD-EDGQRIEPDYYYPVLPLVLVNGAEGI 839

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP+ N +++      +++      E  ++         G I  E  +      
Sbjct: 840  GTGWSTSIPNFNPRDLIANIRLVLEG-----ESPVQMHPWYRHFKGSITEELVKG----- 889

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLED 300
                  + V   + +    R    + VTE+P +   S   E + E++        P + D
Sbjct: 890  ---ETRYNVTGSYNI----RDECTLEVTELPLRSWTSDYKEFLEEMLVPKTKTAKPFITD 942

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLD 358
             ++   +     +               I     + T+  +    L   +  + +     
Sbjct: 943  YKEYHTDSTVHFVITMPPENLAAAQASGIEKKFKLSTKLNITNMHLFNEQGVITKYSSPV 1002

Query: 359  GILKEWLAHRREVLFRRSSFRMQAID---RRVEILKGLLIAYLN------------IDEI 403
             IL+ ++  R +   +R    ++  +   +R+      ++A ++            +   
Sbjct: 1003 AILEAFVPLRLKAYSQRREMLIRLAESQLKRLSNKMRFILAVVDGSLVVNRKKKQELIAE 1062

Query: 404  IAIIRNEDKPKPVMVSRFSLTEN----------QVDAILNLRLRSLRKLEEYQIKSELDN 453
            +  +  +  PK    S   L E+            D +L + L +L   +  ++ +E + 
Sbjct: 1063 LEALCYDRLPKTDKGSVAELDEDGEFIANDVAGSYDYLLGMPLWNLTLEKVDELCAEKEA 1122

Query: 454  LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
              AE  ++     + K  W +    + +  E+     +  R
Sbjct: 1123 KEAEVAELHK--TTEKDLWMKDLDTLEQTLELLDAEDEESR 1161


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 180/512 (35%), Gaps = 85/512 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 764  EGTFVDHNASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 822

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V EV    + HG+ S+  ++V +AQ F        +   G FG+    G 
Sbjct: 823  ELKVAQLAGYVSEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGK 880

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ GI 
Sbjct: 881  DASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEGIG 939

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++ E     ID  E+                          +   YR
Sbjct: 940  TGWSSFVPNYNPRDVIENLRRYIDGEEMQR------------------------MTPWYR 975

Query: 245  LGRGGFRVRARWC-VEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPL 297
              RG     A     E +G     G     +TE+P +       E + E +    KR  L
Sbjct: 976  GFRGRIEENAAGTGFETIGLVRRCGEDTYEITELPIKRWTQDYKEWLEENLPTAEKRDTL 1035

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVM 355
            + D RD S+ +                  E +     +++   +    L      V +  
Sbjct: 1036 IADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYA 1095

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------ 409
                I+KE+   R E   RR ++ +  +++   IL   L   L +     II N      
Sbjct: 1096 NELEIIKEFAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKAL 1155

Query: 410  ---------------EDKPKPVMVS-----------------------RFSLTENQVDAI 431
                           ED     + +                           T    D +
Sbjct: 1156 IEELFSQGYDPMKEIEDAANAGIRAALKRDVTVDDEALAEGGEEEEEIVAGCTAKHYDYL 1215

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            L + + SL   +   ++ E+     E E++  
Sbjct: 1216 LGMPMWSLTLEKVEDLRGEMRQKELELEELRH 1247


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/147 (55%), Positives = 112/147 (76%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             Y+  +  P V P+K P LL NG+SG
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 197/493 (39%), Gaps = 40/493 (8%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T ++     V++   +    + ++      R+IP + DG KP  R+I+ A  +  L    
Sbjct: 659  TFLDTTNGKVTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDLKDEI 717

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSA 126
               + A  V E     + HG+QS+Y ++  +AQ F      PL+   G FG     GD A
Sbjct: 718  KVAQLAGYVSE--HSAYHHGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDA 775

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            A+ RY   R+ ++  LI    D+  +D+++  +    EP  +    P LL NG  G+  G
Sbjct: 776  ASARYIYTRLNKLTRLIFLKEDDQILDYQE-EDGMIIEPKFYLPIIPMLLVNGAEGMGTG 834

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             +TSIPS N  ++ ++   L+D+         E I     P+  +     +  +E     
Sbjct: 835  WSTSIPSFNPIDLIDSLNILLDSNA-------ENIGNVKLPSLDMWARGFKGKIEM--ND 885

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDES 305
             G F  +  + ++  G  S    ++E+P           +  L+    I   + +   E+
Sbjct: 886  SGKFISKGIFKMKSRG-DSIEFDISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTEN 944

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKE 363
            +    I +       DPD   ES      +E  F L+   +      + Q   ++ I+K+
Sbjct: 945  SVGFTIAI------NDPDEFSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQ 998

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---- 419
            +   R     +R S  M+ +++++ IL   +     I    + +    K K   +     
Sbjct: 999  FYLVRLSYYHQRKSHLMKQLEKQIRILSNKVKFLNFITSNESNLNTFIKTKKENIPSFLT 1058

Query: 420  -------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                     +  E   + + ++ + SL    + +I  +L++   E +++ S  +  K  W
Sbjct: 1059 NVVGIVVDPTTIEQSFNYLTDMNILSLTHEHKDRINKQLESAQQELQQVSS--DDPKLMW 1116

Query: 473  NQIACEIREVKEI 485
             +    +R+    
Sbjct: 1117 KRDLKRLRDELTK 1129


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/413 (22%), Positives = 178/413 (43%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKD-DDGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  EI      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEIISNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ +    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFVSHGRYEI----RPDGVVCITELPIGVWTQAYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFN--KEGQITKYSDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            KE+   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/413 (22%), Positives = 178/413 (43%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ NV+ VS R  +++  + ++++   ER+IP + DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYNVRQVSYRDFVDKELILFSIADC-ERSIPSVIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+ QV+  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKD-DDGLSVEPFFYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  EI      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEIISNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ +    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFVSHGRYEI----RPDGVVCITELPIGVWTQAYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFN--KEGQITKYSDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            KE+   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/146 (54%), Positives = 111/146 (76%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYD 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+  
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            Y+  +  P V P+K P LL NG+SG
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
          Length = 1448

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/560 (18%), Positives = 213/560 (38%), Gaps = 49/560 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ K VS    + +  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 711  LYQKDTKKVSYNEFINKELVLFSNAD-NERSIPSMVDGLKPGQRKVLFTCFKKYEKKEIK 769

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+QS+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 770  VAQMAGAVSELSA--YHHGEQSLMSTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAA 827

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +++ +A L+    D+  + +    + +  EP  +    P +L NG+ GI  G 
Sbjct: 828  SARYIFTQLSPLARLVFPHHDDPLLSYMY-DDNQRIEPEFYAPIIPMVLINGSEGIGTGW 886

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I +++++E+      L+   E            P  P+      + E    +     
Sbjct: 887  STRICNYDIREVVANVRRLLAGDE----------PVPMLPSYKNFKGTIEEFEPNRFAVN 936

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G   V               + +TE+P +V      E + E +     K  P + D ++ 
Sbjct: 937  GEISVV----------DDNSVEITELPIRVWTQNYKESVLENMVYGTDKVKPSISDYKEY 986

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLSMG--RVPQVMPLDGIL 361
              +     +   N         E +  +  ++T F   N+ VL      + +   ++ IL
Sbjct: 987  HTDTTVKFVVKMNEDRLLRGEEEGLHKMFKLQTTFSQANLMVLYDRHGCIRRYDNVEEIL 1046

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +E+   R E+  +R ++    ++   E  K    A   +++I   +  E+K K  M+S+ 
Sbjct: 1047 REFFTLRMELYHKRKAYLEGILE--AESSKLNNQARFIMEKIDGKVVIENKSKSSMISQL 1104

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE----KIDSLLN-SGKQQWNQIA 476
            +      D +   +    + +EE +   +     + +       + LL  S      +  
Sbjct: 1105 TSRGYDSDPVKAWKEAQQKSVEEEEDSFDDAASDSSEAGSGPDYNYLLGMSLWSLTKEKK 1164

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEV--------SRADKATLQQAMIEKEPITVVISNRG 528
             ++ + ++  +    L RR+T             +  D+   Q+   E   +T V S   
Sbjct: 1165 NDLLKQRDEKAAELSLLRRKTASMLWTDDLNAFMAELDRVEAQEREDESSGLTGVSSKMT 1224

Query: 529  WIRSLKSHSVDLSALHFKEG 548
              +  K        L  +E 
Sbjct: 1225 KGKGSKITKPRKQKLLTREE 1244


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/502 (18%), Positives = 184/502 (36%), Gaps = 67/502 (13%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N     T ++     V     + +  + ++ + +  R+IP + DGFKP  R+++ +  + 
Sbjct: 689  NAYEPGTYLDMTGDDVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKR 747

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L       + +  V E     + HG+ S+  ++V LAQ F       L+   G FG   
Sbjct: 748  KLKSDIKVAQLSGYVSE--HSAYHHGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRL 805

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   A+ RY   R+  +  +I    D+  +D+ D  + +  EP  +    P +L NG 
Sbjct: 806  QGGKDHASPRYIFTRLAPICRVIFPECDDALLDYLD-EDGQVIEPEHYLPILPLVLVNGA 864

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP+ N ++I      ++D+                          + +I 
Sbjct: 865  DGIGTGWSTSIPNFNPRDIVANIRRILDDECTERM-------------HPWYRNFKGTIE 911

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP---YQVQKSRLIEKIAELIIAKRIPL 297
            E   + +G  R       E V      +V+TE+P   +       +E +         P 
Sbjct: 912  E--EIVKGEIRYNITGKYEIVD--ETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPF 967

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLSMG-RVPQVM 355
            + D ++   +     +             + I     +  +    NM+       + +  
Sbjct: 968  ITDYKEHHTDTTVHFIVTMTPENMAKAQKDGIEKKFKLCAKVSTSNMHAFDEKGGITKYS 1027

Query: 356  PLDGILKEW-------LAHRREVLFRRSSFRMQAIDRRV---------EILKGLLIAYLN 399
              + I++ +        A RR +L R++ F ++ +  +V         E+  G     + 
Sbjct: 1028 SPEAIMEAFVPLRLDAYARRRAMLIRQAEFELKRMSNKVRFILAVVDGEMTIGRKKKSVL 1087

Query: 400  IDEIIAIIRNEDKPKP--------VMVSRFSLTEN------------QVDAILNLRLRSL 439
            I+E+ A    +  PK            +   L++               D +L++ L +L
Sbjct: 1088 IEELEA-AGYDKMPKTAKAAAAADAEPAESGLSDISEEGAPAPADGASYDYLLSMPLWNL 1146

Query: 440  RKLEEYQIKSELDNLLAEKEKI 461
             + +  ++  E     AE E++
Sbjct: 1147 TQEKVDELVEEQRVKTAEVEEL 1168


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSH 194
            P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 180/517 (34%), Gaps = 74/517 (14%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DG KP  R+++    +          + A
Sbjct: 716  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVKVAQLA 774

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 775  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYI 832

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 833  FTMLSPLARLLFPSVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLP 891

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++  +  G   V
Sbjct: 892  NYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFRGTIQELGQNQYVVSGEIFV 941

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDV 309
                           + +TE+P +       E++ E ++    K   L+ D ++   +  
Sbjct: 942  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPALISDYKEYHTDTT 991

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 992  VKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1051

Query: 368  RREVLFRRSS------------------FRMQAIDRRVEILKGLLIAYLNI--------- 400
            R      R                    F ++ I  ++ I        + +         
Sbjct: 1052 RLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLIQMLVQRGYESD 1111

Query: 401  -----DEIIAIIRNEDKPKPVMVSRFSLTEN----QVDAILNLRLRSLRKLEEYQIKSEL 451
                  E       E+ P+       S + +      + ILN+ L SL K +  ++    
Sbjct: 1112 PVKAWKEAQEKAAEEEDPQNANDDASSASGSTSGPDFNYILNMSLWSLTKEKVEELIKHR 1171

Query: 452  DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            D+   E   +     S    W     ++    E   K
Sbjct: 1172 DSKERELNDLKR--KSASDLW---KEDLAAFVEELEK 1203


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 100/524 (19%), Positives = 182/524 (34%), Gaps = 80/524 (15%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L ++N  AVS    + +  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 689  LYQKNTIAVSYSDFINKELVLFS-NLDNERSIPSMVDGLKPGQRKVLFTCLKRNDKKEIK 747

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ +       L+   G FG     G  AA
Sbjct: 748  VAQLAGSVAE--HSAYHHGEASLMGTIINLAQNYVGSNNLNLLLPIGQFGTRLQGGKDAA 805

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    +  +  LI    D+  + + +  + +  EP  +    P +L NG  GI  G 
Sbjct: 806  SPRYIFTLLNPLTRLIFHVHDDPLLKY-NKDDNQKIEPEWYIPIIPMVLVNGADGIGTGW 864

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP+HN +EI +    ++D      ++ L          G I                
Sbjct: 865  MTKIPNHNPREIVQNIKRMLDG-----DEPLPMKPWYKGFKGDIESYGDS---------- 909

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE----LIIAKRIPLLEDIRD 303
               R      +  +      + +TE+P         E + E     +  K  PL++D ++
Sbjct: 910  ---RYLVSGEISIISNN--QLEITELPVGTWTQAYKENVLEPLLHGVENKVPPLIQDYKE 964

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
             + +     +     S       E +  +  +++   +N      S G + +   +  IL
Sbjct: 965  YNTDTTVRFVIQMEPSKLQKFEEEGLHKVFKLQSTISINSMCTFDSNGVLKRSEDVTVIL 1024

Query: 362  KEWLAHRREVLFRRSSFRM-----------QAIDRRVEILKGLLIAYL-----NIDEIIA 405
            KE+   R     +R S+                   +E   G L+         IDE++ 
Sbjct: 1025 KEFYDLRMLFYVKRKSYLEGMLQSEADKLSNQARFIIEKCDGKLVIENKKKKVMIDELVK 1084

Query: 406  IIRNEDKPKP---VMVSRFSLTEN--------------------QVDAILNLRLRSLRKL 442
            +    D  K     +    +LT                        D +L + L SL  L
Sbjct: 1085 LKYESDPVKTWKTNIDKEAALTYGEIWEDEGSGSEEEGTVRSGPDYDYLLGMPLWSLT-L 1143

Query: 443  EEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEI 485
            E       L     + +++ SL   S    W     ++    E 
Sbjct: 1144 ERKN--ELLKKRDDKIKELKSLQAKSPSLLW---REDLDAFLEK 1182


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 180/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 723  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCCKRNDKREVKVAQLA 781

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 782  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYI 839

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  IP
Sbjct: 840  FTMLSPLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKIP 898

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      ++D  +            P  P       + + + ++  +  G   V
Sbjct: 899  NYDTREIVNNVRRMLDGLD----------PLPMLPNYKNFKGAIQELGQNQYVVSGEIYV 948

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDV 309
                           + +TE+P +       E++ E ++    K   L+ D ++   +  
Sbjct: 949  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPALISDYKEYHTDTT 998

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 999  VKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1058

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------- 414
            R      R  +    +    E  K    A   +++I   I  E+K K             
Sbjct: 1059 RLNYYNLRKEWLAGIL--GAESTKLNNQARFILEKIQGKIAIENKSKRDLIQLLVQRGYE 1116

Query: 415  -------------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                                         S  S +    + ILN+ L  L K +   I  
Sbjct: 1117 SDPVKAWKEAQEKAAEEEEMQNLNDDSSSSSGSTSGPDFNYILNMSLWCLTKEKVEDIIK 1176

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D+   +   +     S    W     ++    E   K
Sbjct: 1177 QRDSKGKDLNDLKR--KSPSDLW---KEDLAAFVEELDK 1210


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 103/530 (19%), Positives = 201/530 (37%), Gaps = 80/530 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++ N+ A+ +   + +  + ++L+    R+IP + DGFKP  R+++    ++ L 
Sbjct: 657  EPGTVLDPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLT 715

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DG 123
            +       A  V E     + HG++S+  ++V LAQ FV      L+   G+FG+    G
Sbjct: 716  YEIKVGTLAAKVSEKTS--YHHGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGG 773

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY   ++ +VA  I    D+   ++ +  +    EP  +    P +L NG  GI
Sbjct: 774  KDAAAARYIHTQLNKVARSIFHPSDDALFNYLE-DDGSPIEPEWYLPIIPMVLVNGAEGI 832

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS N  +I +    L+++  +           P +     +VE  +      
Sbjct: 833  GTGWSTNIPSFNPLDIIKNIRHLMNDEVMDEM-------YPWYRGWKGVVEKVDDH---- 881

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    VE+V  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 882  -------RFRLYGKVEQV--GPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM 932

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
             ++   D+R ++      +     +        +      NM       ++ +   +  I
Sbjct: 933  EEQHTNDIRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDI 992

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
            L E+   R E   +R  +  Q +   VE +   +     I +    + N+ K        
Sbjct: 993  LTEFYYVRLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMIIDKEYTVSNKAKKIIMKELE 1052

Query: 413  ----PKPVMVSRFSL-------------------TENQ-------------VDAILNLRL 436
                P+     +                       E Q              D +L ++L
Sbjct: 1053 GFGFPRINKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLLGMKL 1112

Query: 437  RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
              L      +++++      E E +  L  S K  WN    ++   ++ +
Sbjct: 1113 WDLTMERYEKLRAQKQEKEIELETLLKL--SPKDLWN---TDLEAFEKEY 1157


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus anatinus]
          Length = 1746

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 187/539 (34%), Gaps = 82/539 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++          
Sbjct: 710  EDYLYGKATNYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFRRNDKR 768

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 769  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGK 826

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D++ + F    + +  EP  +    P +L NG  GI 
Sbjct: 827  DSASPRYIFTMLSPLARLLFPVKDDNTLKFLY-DDNQRVEPEWYIPIVPMVLVNGAEGIG 885

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  +P+++V+E+      ++D  E            P  P+      + + +  +  
Sbjct: 886  TGWSCKLPNYDVREVVNNIRRMMDGEE----------PLPMLPSYKNFKGTIDELAPNQY 935

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K   L+ D 
Sbjct: 936  VINGEVSILDSTTIE----------ISELPVRTWTQVYKEQVLEPMLNGTEKTPALIVDY 985

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  ++T    N  VL      + +      
Sbjct: 986  REYHTDTTVKFIVKMTEQKLAEAEAAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYDTALD 1045

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  +    A   +++I   I  E+KPK  ++ 
Sbjct: 1046 ILRDFFELRLKYYGLRKEWLVGML--GAESARLNNQARFILEKIEGKIVIENKPKKELIK 1103

Query: 420  RFSLTENQVD-----------------------------------------AILNLRLRS 438
                     D                                          +L + L  
Sbjct: 1104 VLIQRGYDSDPVKAWKEAQQKGSGEEENEDSENEKETEKSESTSATGPDFNYLLEMPLWY 1163

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ----IACEIREVKEIFSKSTDLG 493
            L K ++ ++  + DN   E E +     S    W +       E+  V+    +    G
Sbjct: 1164 LTKEKKDELCRQRDNKTQELETLKR--KSPADLWKEDLAAFVEELEAVETREKQDEQAG 1220


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 157/415 (37%), Gaps = 33/415 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + T ++   +A++    + +  + ++++    R+IP + DGFKP  R+++ A  +  L  
Sbjct: 686  AGTFLDHQTEAITYSEFINKELILFSMADNV-RSIPSVVDGFKPSQRKVLFACFKRNLKD 744

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  ++V +AQ +       L+   G FG     G 
Sbjct: 745  EIKVAQLAGYVAE--HSAYHHGEVSLAGTIVNMAQNYTGSNNINLLLPLGQFGTRLQGGK 802

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   ++  +  LI    D+  +++ D  + +  EP  +    P  L NG  GI 
Sbjct: 803  DAASARYIFTKLATLTRLIFPANDDSLLNYLD-EDGQRIEPEWYMPILPLSLINGCEGIG 861

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++S+P+ + +++      ++   +             +  TG I    +        
Sbjct: 862  TGWSSSVPNFSPRDVVANIRLMMAGQDPEPMC-----PYYNGFTGTIEPLGKAD------ 910

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----IAKRIPLLED 300
                  R R    + ++      + +TE+P  V      E++ +L+      K    ++D
Sbjct: 911  ------RFRVCGRITKLSA--TTLEITELPIGVWTQSYKEELEKLMEPNEKDKTPGFIKD 962

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
             R+   +         +           +     +++       V      R+ +     
Sbjct: 963  FRENHTDTSVHFTVTLSEENMAAAEAMGLAKKFKIDSTISTANMVFFDAEGRIKKYDSPQ 1022

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             IL+++   R +   +R S+ ++ +      L   +     + +   +I N  + 
Sbjct: 1023 AILRDFYDLRLKYYQKRKSWLVERLTEEWTRLDNKVRFIQAVIKGDLVISNRKRA 1077


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus BV-PW1]
          Length = 1101

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 191/470 (40%), Gaps = 44/470 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N  +  N + + +   + +  + ++     +R+IP L DGFKP  R+I +  +  GL+
Sbjct: 640  DKNLTINSNDRQIPVPDFINKDLIHFSNDD-TQRSIPSLVDGFKPSQRKIFYGANLRGLE 698

Query: 68   FGA-AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                   + A  V + +   + HG+ S+  +++ +AQ F       L+  +G FG+  + 
Sbjct: 699  KDQVKVAQLAGFVSDRVA--YHHGEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVMG 756

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   ++ +VA LI +  D   +++    +    EP  +    P +L NG +G
Sbjct: 757  GKDSASPRYIWTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGATG 815

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP ++ QE+               E L + I G  +          E  +  
Sbjct: 816  IGTGFSTSIPCYHPQELI--------------EVLKKLIKGEKYKKIHPYYHKFEGKL-- 859

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             +L    ++V   + +         IVV E+P     +   + + +++            
Sbjct: 860  KKLDTTSYQVSGTYHI----DKKNNIVVEELPVGEWTTNYKQFLEKMLDTDTNFT---NY 912

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            D ++ D +I++  K +++ P  L E + M  + +            G + +   +D I+ 
Sbjct: 913  DNNSTDEKILITLKFKNI-PTKLDEKLKM--NKKINLTNLHAYTEKGHIQKFKNIDEIIN 969

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------DKP 413
             +   R E  + R  + ++    +++I+K  +     I     II N+         +  
Sbjct: 970  NFYYVRLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNKKKLIIEQDLETK 1029

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            K   + +    E   D +L + L SL K +  +++ +          + +
Sbjct: 1030 KYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKN 1079


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 99/512 (19%), Positives = 180/512 (35%), Gaps = 85/512 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T V+ N  ++S    + +  + ++     ER+IP L DG+KP  R+++ A  +  +  
Sbjct: 764  EGTFVDHNASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKH 822

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V EV    + HG+ S+  ++V +AQ F        +   G FG+    G 
Sbjct: 823  ELKVAQLAGYVSEVSA--YHHGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGK 880

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+A RY   R+     L+    D+  +++      +  EP ++    P +L NG+ GI 
Sbjct: 881  DASAARYIFTRLAFYTRLVFHEADDPILEYEY-EEGQRIEPKMYVPVIPTVLINGSEGIG 939

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++ +P++N +++ E     ID  E+                          +   YR
Sbjct: 940  TGWSSFVPNYNPRDVIENLRRYIDGEEMQR------------------------MTPWYR 975

Query: 245  LGRGGFRVRARWC-VEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPL 297
              RG     A     E +G     G     +TE+P +       E + E +    KR  L
Sbjct: 976  GFRGRIEENAAGTGFETIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTL 1035

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVM 355
            + D RD S+ +                  E +     +++   +    L      V +  
Sbjct: 1036 IADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYA 1095

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------ 409
                I+KE+   R E   RR ++ +  +++   IL   L   L +     II N      
Sbjct: 1096 NELEIIKEFAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKAL 1155

Query: 410  ---------------EDKPKPVMVS-----------------------RFSLTENQVDAI 431
                           ED     + +                           T    D +
Sbjct: 1156 IEELFSQGYDPMKEIEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYL 1215

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            L + + SL   +   ++ E+     E E++  
Sbjct: 1216 LGMPMWSLTLEKVEDLRGEMRQKELELEELRH 1247


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1432

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 171/476 (35%), Gaps = 44/476 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +  +  
Sbjct: 669  PGTHLDQREPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFTAFKKIVVK 727

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGD 124
                 +    V       + HG+QS+  +++ +AQ +       L+   G FG  N  G 
Sbjct: 728  EMKVAQLVGYVS--SMSAYHHGEQSLASAIIGMAQDYVGSNNINLLQPNGQFGTRNSGGK 785

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ V  ++    D   +D+    + +  EP  +    P +L NG+ GI 
Sbjct: 786  DAASARYIFTILSPVTRILFPKDDHILLDYL-NEDGQSIEPTWYMPIIPTVLVNGSEGIG 844

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N +EI       ++   +                        +  +E   
Sbjct: 845  TGWSTFIPNYNPREIVANVRCRLNGESMVPMD--------------PWYRGFKGTIEKTA 890

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
               GG         EEV      I +TE+P +       + +  L      P  +D++  
Sbjct: 891  SKEGGCTYTITGLYEEVDD--TTIRITELPIRRWNDDYKQFLQSLKTDNGAPFFQDVKAY 948

Query: 305  SAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILK 362
            + +  V   L     ++        +       T    NM++    G + +    + IL+
Sbjct: 949  NDDKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDRKGVIKKYATPEQILE 1008

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R E   +R    ++ ++  +  L+  +   L +     I+ N  K          
Sbjct: 1009 EFFELRLEYYEKRKETMLKNLEIELLKLENKVRFILGVLSGEIIVNNRKK---------- 1058

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQI 475
                  D + +LR R      +     E      +    E+ + +L   +     I
Sbjct: 1059 -----ADIVEDLRQRGFTPFPKKAESVEAAVAGAVDDAAEESEEILVDPESSSTYI 1109


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 190/470 (40%), Gaps = 44/470 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N  +  N + + +   + +  + ++     +R+IP L DGFKP  R+I +  +  GL+
Sbjct: 1027 DKNLTINSNDRQIPVPDFINKDLIHFSNDD-TQRSIPSLVDGFKPSQRKIFYGANLRGLE 1085

Query: 68   FGA-AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                   + A  V + +   H  G+ S+  +++ +AQ F       L+  +G FG+  + 
Sbjct: 1086 KDQVKVAQLAGFVSDRVAYHH--GEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVMG 1143

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   ++ +VA LI +  D   +++    +    EP  +    P +L NG +G
Sbjct: 1144 GKDSASPRYIWTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGATG 1202

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP ++ QE+               E L + I G  +          E  +  
Sbjct: 1203 IGTGFSTSIPCYHPQELI--------------EVLKKLIKGEKYKKIHPYYHKFEGKL-- 1246

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
             +L    ++V   + +         IVV E+P     +   + + +++            
Sbjct: 1247 KKLDTTSYQVSGTYHI----DKKNNIVVEELPVGEWTTNYKQFLEKMLDTDTNFT---NY 1299

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            D ++ D +I++  K +++ P  L E + M  + +            G + +   +D I+ 
Sbjct: 1300 DNNSTDEKILITLKFKNI-PTKLDEKLKM--NKKINLTNLHAYTEKGHIQKFKNIDEIIN 1356

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------DKP 413
             +   R E  + R  + ++    +++I+K  +     I     II N+         +  
Sbjct: 1357 NFYYVRLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNKKKLIIEQDLETK 1416

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            K   + +    E   D +L + L SL K +  +++ +          + +
Sbjct: 1417 KYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKN 1466


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 179/519 (34%), Gaps = 78/519 (15%)

Query: 17   VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
             K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 699  TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 757

Query: 77   RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
              V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 758  GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 815

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
               ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 816  FTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 874

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            +++ +EI      +++  +            P  P       + + + ++     G   V
Sbjct: 875  NYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 924

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                           + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 925  V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 974

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAH 367
               +               +  +  ++T    N  VL      + +   +  ILKE+   
Sbjct: 975  VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDL 1034

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---- 423
            R      R  + +  +    E  K    A   +++I   I  E++ K  ++         
Sbjct: 1035 RLSYYGLRKEWLVGML--GAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYE 1092

Query: 424  ----------------------------------TENQVDAILNLRLRSLRKLEEYQIKS 449
                                              +    + ILN+ L SL K +  ++  
Sbjct: 1093 SDPVKAWKEAQEKAAEEEDAQNPHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIK 1152

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            + D    E   +     S    W     ++    E   K
Sbjct: 1153 QRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 85/496 (17%), Positives = 193/496 (38%), Gaps = 49/496 (9%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +  + ++     VS+   + +  + ++      R+IP + DG KP  R+++H   +  L 
Sbjct: 674  DPESYIDYEKSPVSIYDFINKELIQFSRQDCI-RSIPSMIDGLKPSQRKVLHGCIQRNLT 732

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + +  + E +  L+ HG+QS+  +++ +AQ F        +   G FG   + G
Sbjct: 733  KEIKVVQLSGYISESV--LYHHGEQSLNQTIISMAQDFVGSNNMNFLVPNGQFGTRLMGG 790

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY    +  + + + +  D   +  ++       EP  +    P +L NG  GI
Sbjct: 791  KDSASPRYIYTYLHPITKHVFREEDSALLPSQE-EEGVHIEPSYYLPILPTVLVNGAVGI 849

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T++ +HN  E+ +A +A +     +               G I+           
Sbjct: 850  GTGWSTNVCNHNPIEVADALIAQLRGTRSNR----PLYPWYRGFVGQILK---------- 895

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                 G++V               + +TE+P         + + +L+    + +     +
Sbjct: 896  --KENGYQVCGNVS----WIDENTLAITELPVGRWTQDYKQFLCDLVEQGDV-VTGFREN 948

Query: 304  ESAEDVRIVLFPKNRSL-----DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             +  +V   +  K         + + LM+ + ++  + T   +  N  S G +      +
Sbjct: 949  HTDTEVMFTVTVKKEKAAELKENREKLMKDLRLIGSLTTSNFILFN--SKGHIHHYKDAN 1006

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--------DEIIAIIRNE 410
             I++E++  R     +R    M+ +D++ ++L+       ++        D  I  + ++
Sbjct: 1007 EIMEEFIEFRLPFYQQRRENLMKQLDKKCKLLENKSNFIQHVVDGSLVLHDRPIKKVISD 1066

Query: 411  DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
             +   +M        +  D +LNL L  L      + + +LD  + E ++   +LNS + 
Sbjct: 1067 MEALGLMKIGSDGETSTYDYLLNLPLNGLT----EEKRKQLDTEMKETKEKKEVLNSKES 1122

Query: 471  QWNQIACEIREVKEIF 486
              +    ++ E K  F
Sbjct: 1123 -KDLWIEDLEEFKSNF 1137


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 119/152 (78%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
           +K PNLL NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 152


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 184/452 (40%), Gaps = 31/452 (6%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            + ++      L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M      
Sbjct: 14  DVYDDTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKE 73

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            F K A I G V    + HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA R
Sbjct: 74  KFHKLASIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASR 133

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           Y  AR+      + +  +   V      + E   P  +    P +L NG SGIA G AT+
Sbjct: 134 YIFARIGTNFAKVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGISGIATGYATN 189

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           I  H+   + +A L ++    ++  K+                E R  +V    +  G +
Sbjct: 190 ILPHSFDSVKKAVLQVLQEKRVTKPKVA-------------YPEFRGDVV---EIEPGSY 233

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
            +R  +           + +TEIPY+  +   + K+ + +  K     +D  DE+    +
Sbjct: 234 ELRGTYKF----TSRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGFGFK 289

Query: 311 IVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHR 368
           + +        + +   E I     +  R   N+ V++     +    +  ++++++  R
Sbjct: 290 VKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVR 349

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTE 425
           +  + +R     + I+        L  A    D I  ++  + K + V+        +  
Sbjct: 350 KTFVQKRI--DGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELTGNKVYG 407

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
              D ++ + +  +   E  ++  E      E
Sbjct: 408 EYADKLVAMNIFHITSDEAKKLALEAKAKKEE 439


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 72/152 (47%), Positives = 104/152 (68%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+ 
Sbjct: 1   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  
Sbjct: 61  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           +++ +D++ V+    Y+E   EP VFPSKFP 
Sbjct: 121 LMEDLDKNTVEMVPNYDETKKEPTVFPSKFPM 152


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3) [Monodelphis
            domestica]
          Length = 1548

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 90/531 (16%), Positives = 181/531 (34%), Gaps = 83/531 (15%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +  K ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 683  EDYLYGKATKHLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 741

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 742  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 799

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 800  DSASPRYIFTMLSPLARLLFPAKDDQTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 858

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + + +  +  
Sbjct: 859  TGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIDELAPNQY 908

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 909  VISGEVSIINSTTIE----------ISELPVRTWTQVYKEQVLEPMLNGTDKTPPLITDY 958

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +               +  +  ++T    N  VL      + +      
Sbjct: 959  REYHTDTTVKFIVKMTEEKLAQAEHAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYDTALD 1018

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  +    +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1019 ILRDFFDLRLKYYGLRKEWLTGML--GAESAKLNNQARFILEKIEGKIVIENKPKKELIK 1076

Query: 420  RFSLTENQVD-------------------------------------------AILNLRL 436
                     D                                            +L++ L
Sbjct: 1077 VLIQRGYDSDPVKAWKEAQQKSPGDNEEETEESDNEKETEKSDSATDSGPTFNYLLDMPL 1136

Query: 437  RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              L K ++ ++  +      E E +     S    W     ++    E   
Sbjct: 1137 WYLTKEKKDELCRQRTEKEQELENLKR--KSPSDLW---KEDLAAFVEELE 1182


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 165/439 (37%), Gaps = 35/439 (7%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 181 EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 239

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 240 EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 297

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 298 DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 356

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +  IP+ +V+EI      L+D  E            P  P+      + E +  +  
Sbjct: 357 TGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQY 406

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
           +  G   +     +E          ++E+P +       E++ E ++    K  PL+ D 
Sbjct: 407 VISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDY 456

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
           R+   +     +         +     +  +  ++T    N  VL      + +   +  
Sbjct: 457 REYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLD 516

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 517 ILRDFFELRLKYYGLRKEWLLGML--GAESAKLNNQARFILEKIDGKIIIENKPKKELIK 574

Query: 420 RFSLTENQVDAILNLRLRS 438
                    D +   +   
Sbjct: 575 VLIQRGYDSDPVKAWKEAQ 593


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 202/497 (40%), Gaps = 52/497 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            +    + +++ YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DVSELFKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-GNIDGDSAAAYRYTEARMTQV 139
             +   HPHGD ++ ++LV LA        LI  QGNF   + GD  AA RY EAR++ +
Sbjct: 60  RTMA-FHPHGDAAIIEALVVLANKG----YLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A+  L   + D +  +D+Y+  D EP   PSK P LL +G  GIAVGM T I  HN  E+
Sbjct: 115 AKETLF--NTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSEL 172

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            +A +AL+ N   +        + PDFP+G ++  ++      Y+ G G   +RA+  + 
Sbjct: 173 IQAQIALLKNRPFT--------LLPDFPSGALMDATQ------YQDGLGSVLLRAKIQIL 218

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +       +++ EI        LI  I        I  ++ I+D S +   I +    R 
Sbjct: 219 DDK----TLLIQEICPSTTTETLIHSIENAAKRGVIK-IDSIQDFSTDLPHIEI-KLPRG 272

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +  + L+ ++F  ++ +         +      +      +     A +  +        
Sbjct: 273 VHAEALLPALFEHTECQVELFSRPTAIHHHSPIECSVSTILKFHTEALQEYLQKELQLLL 332

Query: 380 MQAIDRRVEILKGLLIAYLNI-DEIIAIIRNEDKPKPVMVSRFSL--------------T 424
            Q            L     + D +   +    +     + +  L              T
Sbjct: 333 EQLEREHYHKSLEYLFIKHRLYDPVRERLSKATRVSQEHIHQTILSVLAPWLPELPALPT 392

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           +     + +L +R +    E   K E+  L  ++      L   K         I+ +++
Sbjct: 393 KADTGQLASLTIRKILCFREETYKKEISALEKKQ------LAVKKDLSRIKEYTIKYLQD 446

Query: 485 IFSKSTDLGRRRTTFCE 501
           + ++   LG+R+T   +
Sbjct: 447 LLNRYAHLGKRKTQITQ 463


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNV 196
           P+K PNLL NG+SGIAVGMAT+IP HN+
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 171/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L 
Sbjct: 659  EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLK 717

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  V E     + HG+QS+  +++ LAQ F       L+   G FG     G
Sbjct: 718  SELKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGG 775

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++   I    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 776  KDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYLPILPMILVNGAEGI 834

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP  N  EI +    L+++     E+L +        TG I     E I    
Sbjct: 835  GTGRSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPWFRGWTGTI-----EEIEP-- 882

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
                   R R    +E++  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 883  ------LRYRMYGRIEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM 934

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
             ++  ++++ ++      +     +        +     +NM      G++ +   ++ I
Sbjct: 935  EEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEI 994

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   +R     + +   VE     +     I E    + N  KP+  ++  
Sbjct: 995  LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTN--KPRNAIIQE 1052


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 100/608 (16%), Positives = 205/608 (33%), Gaps = 94/608 (15%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ +AVS    +    + ++      R+IP++ DG KP  R+++    +        
Sbjct: 678  LYEKDTRAVSFSDFINVELVLFSNYDNI-RSIPNMMDGLKPGQRKVLFTCFKRNDKREVK 736

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              +    V E     + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 737  VAQLGASVAE--HSAYHHGEMSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSA 794

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A  I    D+  +      + +  EP  +    P +L NG  GI  G 
Sbjct: 795  SPRYIFTMLSPLARYIFHKHDDPLLKHEY-DDNQKIEPTYYVPIIPMVLVNGADGIGTGW 853

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +EI E    ++D  +            P  P       + ES  +   +  
Sbjct: 854  MTKIPNYNPREIIENLQRMMDGAD----------PRPMSPFYKNFKGTIESCGDYRYVIS 903

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +     VE          +TE+P         E + E ++    K  P++ D ++ 
Sbjct: 904  GEISIIGPDKVE----------ITELPIGTWTQAYKETVLEPMLHGSDKTPPVITDYKEY 953

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + + +   +    R    +L  + +     ++T   +           + +   +  I++
Sbjct: 954  NTDTMVHFVVTLQRDKLAELERDGLHKAFKLQTTTSITSMCAFDDNLCLKKFDNVCQIMR 1013

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-- 420
             +   R ++  +R  +    +    E  K    +   +++    +  E+K K  M++   
Sbjct: 1014 TFFTVRLDLYQKRKDYLEGILQ--AESAKLSNQSRFIMEKCDGTLTIENKKKKDMIAELV 1071

Query: 421  -----------------------------------FSLTENQVDAILNLRLRSLRKLEEY 445
                                                 + +   D +L + + SL K ++ 
Sbjct: 1072 RRGYDSDPVVAWKLAQNREEEEVAENEDDEASTSAVVVEKENFDYLLGMTMWSLTKEKKD 1131

Query: 446  QIKSELDN-------------LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            ++  + D              L   KE +D+LL    +       E ++  +   K+   
Sbjct: 1132 ELLKQRDEKLAELHRLQARTPLSLWKEDLDNLL---TELNKIEEKERKDEAKSRVKTKKP 1188

Query: 493  GRRRTTFCEVSRADKATLQQAMIEKE--PITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
              +     +  R       +   + E   I V     G    +K           +E D 
Sbjct: 1189 PAKIYKEEDTRRIVPVIDTELKKKIEKADIVVKDKKEG----IKKERKIKKEKSTEEKDE 1244

Query: 551  LKIALHAH 558
                +  +
Sbjct: 1245 FDALVEGN 1252


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 172/413 (41%), Gaps = 29/413 (7%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N     T ++ + K +S    +++  + ++ +  K R+IP + DG KP  R+I+ +  + 
Sbjct: 679  NNHQEGTYIDHSKKEISYTDFIDKELILFSKADCK-RSIPSIVDGLKPGQRKILFSCFKR 737

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L       + A  V E     + HG+ S+  ++V +AQ F       L+   G FG   
Sbjct: 738  NLKKEIKVAQLAGYVSE--QSAYHHGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRL 795

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  +A+ RY   +++++   I    D+  +++ D  + +  EP  +    P +L NG+
Sbjct: 796  QGGKDSASPRYIFTKLSEITRYIFPKADDPVLEYLD-DDGQSIEPRFYVPILPMVLVNGS 854

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI    +T+I ++N  +I E   ALI       E+  E+                + I+
Sbjct: 855  EGIGTAWSTNIETYNPVDIVEGLKALIKG-----EEAKEFHPWYK---------GFDGII 900

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            E  RL    ++ +    +E++      + ++E+P ++      E++ +++ A+++    +
Sbjct: 901  E--RLAPTKWQTKGV--IEKIDDN--TLDISELPIRIWTESFKERLEKMMEAQQVDDFRE 954

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
               +      + +  K      D  +   F L    +     +     G + +   +  I
Sbjct: 955  NHTDVTVSFTVKMTDKQMKDAEDAGLYDYFKLFKKFST-SNMVLFSEEGGIKEYETVLDI 1013

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            LKE+   R +   +R  + ++ + + +EIL   +   + +      ++   K 
Sbjct: 1014 LKEFYPIRLKFYGKRKEYMLEKMKKELEILSNKVRFIMEVINETIQVKKRKKA 1066


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 79/146 (54%), Positives = 111/146 (76%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYN 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+  
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            Y+  +  P V P+K P LL NG+SG
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 194/527 (36%), Gaps = 90/527 (17%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ +V  +S    + +  + ++++    R+IP + DG KP  R++++      
Sbjct: 767  QFKPGTFLDHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRN 825

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            L       + A  V  +    + HGD S+  ++V LAQ                +  G  
Sbjct: 826  LKKDMKVVELAGHVSGMTA--YQHGDISLQQTIVGLAQ----------------SFGGSD 867

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
             A+ RY   R++  A  +    D+  + + +  + E  EP ++    P +L NG  GI  
Sbjct: 868  CASARYIYTRLSPFARRVFHAHDDPLLTYNE-DDGEKIEPEIYVPVVPMILVNGADGIGT 926

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G ++SIP++N ++I +    L+D  E            P F      V            
Sbjct: 927  GWSSSIPNYNPEDIVDNLKRLMDGEETRPM-------QPWFRGFTGEV-----------T 968

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-LLEDIRDE 304
              GG R +    ++E   G   + +TE+P +       +K+ ++I A++ P  ++D +D 
Sbjct: 969  DVGGDRFKFSGIIKET--GEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDY 1026

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKE 363
            +            +++   L           +T    N+      GR+ +   +D ILKE
Sbjct: 1027 NTH---------TKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKE 1077

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------- 412
            +  +R +   +R  +++  + + ++ L         I +   ++  + K           
Sbjct: 1078 FYTYRLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKG 1137

Query: 413  ----PKPVMVSRFSLTENQ-------------------VDAILNLRLRSLRKLEEYQIKS 449
                PK     +    E                      D +L + + SL +    +++ 
Sbjct: 1138 YKAFPKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRR 1197

Query: 450  ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            ++     E + +  +  S +  W     ++ +    +    +   RR
Sbjct: 1198 QIGEKEVEVDAL--IKMSKEDIW---KRDLDDFIAEWRFQLEDEHRR 1239


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/526 (16%), Positives = 186/526 (35%), Gaps = 81/526 (15%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 745  QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 803

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
            L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 804  LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 861

Query: 123  -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    +  +  L+ +  D+  +  R T +    EP  +    P +L NG  
Sbjct: 862  GGKDHASPRYIYTEIAPLTRLLCRPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 920

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP +N  +I      L++      E+++  +       G            
Sbjct: 921  GIGTGWSTTIPCYNPVDIVANIRRLMNG-----EEVVPMLPWWRGFKG------------ 963

Query: 242  SYRLGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
                       + ++ V  + +      + +TE+P          ++  +I  K   +++
Sbjct: 964  -----EVKMVAKHKYDVTGIAKKLNDTTVEITELPIYKWTQNFKAELEGMIGEKGDGVVK 1018

Query: 300  DIRDESAE-DVRIVLFPKNRS---LDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQV 354
            D ++     +V  V+    +     +   L+E   + + + T    NM      G++ + 
Sbjct: 1019 DYKEYHDNLNVHYVVTMPAKELEKAEQQGLIEFFKLTTKINTS---NMMCFDFDGKMKKY 1075

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI-------------- 400
               + IL+E+   R     +R  F    +    E L         I              
Sbjct: 1076 DSPEEILEEFYPVRLAYYQKRKDFLANELQTVFERLSNQARFIQMIVDKQLSVSNRKKAD 1135

Query: 401  ----------------------DEIIAIIRNEDKPKPVMVSR-FSLTENQVDAILNLRLR 437
                                   E+  ++   D+P           +    D +L + + 
Sbjct: 1136 IIQDLRKHQFRPFPKISKAKAAGELEEVVDGADEPAEEEEETGSGDSATDFDYLLGMAIY 1195

Query: 438  SLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREV 482
            SL K +  +++ + +    ++ ++ +LL     + WN+      E 
Sbjct: 1196 SLTKEKIGKLRQQANE---KELELMALLEKKPSEMWNEDLDRFLEE 1238


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 200/499 (40%), Gaps = 45/499 (9%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++ +  ++ ++K ++    + +  + Y+ +    R+IP L DG KP  R+I+ A  +  L
Sbjct: 774  TDMSQGIDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRL 832

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + +  V E     + HG+QS+  ++V++A  F      PL++  G FG     
Sbjct: 833  TNEIKVSQLSGYVAEQTS--YHHGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQG 890

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  +A+ RY   ++  V  L    +D+  +++ +    E  +P  +    P LL NG+ G
Sbjct: 891  GSDSASARYI-LQLEPVGTLPFNELDDPLLNYLE-EEGESIQPDYYIPIIPMLLVNGSEG 948

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I VGM+TSIP  +  +I +  +  ++N       L + I       G I  +       +
Sbjct: 949  IGVGMSTSIPLFSPIDIIDQLMLRLNNQVA----LKKLIPWYRGFKGTISPD-----RHT 999

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
            YR   G  ++  R            + +TE+P     S   E + +LI    I   ++  
Sbjct: 1000 YRTN-GVIKLVGR-----------NLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESN 1047

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             E++    I+L         DL    +  L  +      ++       ++ ++  ++ I+
Sbjct: 1048 TENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEII 1107

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418
             ++   R +   +R  + ++++D +++ L   +     I      I+    +D  K +  
Sbjct: 1108 DQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKELES 1167

Query: 419  SRFSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS-GKQ 470
                  EN           + +L +  + K     +    + L   K +  S+ +S  K 
Sbjct: 1168 GEIVGFENFGTHPPEVYQHLFSLSILDITKERIDNLT---NQLTKRKSEHQSISSSDPKS 1224

Query: 471  QWNQIACEIREVKEIFSKS 489
             W     +++E  E   K 
Sbjct: 1225 LWTADLQQLKEYLEKSDKE 1243


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/505 (19%), Positives = 188/505 (37%), Gaps = 48/505 (9%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N       ++  V  ++    +++  + ++      R+IP + DG KP  R+++    + 
Sbjct: 674  NQYQPGDYIDYAVDKMAYSDFMDKELIQFSRYD-NARSIPCVVDGLKPSQRKVLFGAFKR 732

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L       + +  V E     + HG+QS+ D+++ +AQ F       L    G FG+  
Sbjct: 733  KLTSEIKVVQFSGYVSEHAA--YHHGEQSLNDTIIGMAQDFVGSNNINLFVPAGQFGSRL 790

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  AA+ RY    ++ +  LI +  D+   ++      +  EP  +    P +L NG 
Sbjct: 791  LGGKDAASPRYIYTYLSPITRLIFKEDDDLLCNYL-VEEGQSIEPEFYLPIIPMVLVNGA 849

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +T IP++N  EI    +A     +++ EK  E        TG I    +    
Sbjct: 850  EGIGTGYSTKIPNYNPVEIANYIIA-----KLNNEKPPELHPWWRGFTGDIYKRPK---- 900

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IP 296
                    G+ +R R             V+TE+P         + + E+++ ++    I 
Sbjct: 901  --------GYLIRGRIT----KVDDLTYVITELPIGRWTQDYKQILTEMMLPEKKAPVIA 948

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
              ++   ++     ++L P+         +   F L    T    N+   + G++     
Sbjct: 949  DFKENHTDTTVHFTVMLTPEQAQALQGQDLYKFFKLEAAITTSNFNLFSST-GQITHYAS 1007

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
               I+ E+   R      R  F +   ++ +  L  +    L + E   II N    +P 
Sbjct: 1008 PQHIIDEFFEFRLPYYQERKDFLLAKFEKEIRRLSNMTRFILEVVEGKLIINN----RPR 1063

Query: 417  MVSRFSLTENQVDAILNLRLRSLRK-----LEEYQIKSELDNLLAEKEKIDSLLNSGK-- 469
                  L + + D I     ++  K     + +   K E  +L +  E +  LL      
Sbjct: 1064 KDIMQDLVKRKYDPIYPEAKKTSSKSGDVEIAKQDEKEEGVDLDSADENLSKLLKGYNYL 1123

Query: 470  ---QQWNQIACEIREVKEIFSKSTD 491
               + W+     + E+K+    +  
Sbjct: 1124 LSMKIWSLTKELVDELKKNLETAQK 1148


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/404 (22%), Positives = 168/404 (41%), Gaps = 44/404 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V+    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVTYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ +      PL+   G FG     
Sbjct: 709  VRSIKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNIPLLHRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTNIARRIYHPSDDFVVDYKD-DDGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L     +S + L          TG I           
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLRRL-----LSGDDLRPMKPWYFGFTGTIE---------- 870

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F    R+ V    R    + +TE+P     S+  + + +L   + +    +  
Sbjct: 871  -EREKGKFVSSGRYTV----RPDGVVCITELPIGTWTSQYKKFLEDLREREVVVQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + + P         +++       +E +  L   + +          R+ + 
Sbjct: 926  TDVTVDFEVFIHP--------EVLQQWTNQGCLEDKLQLREYIHATNIIAFDREGRITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            +  + +LKE+   R E   RR  F ++ + R V  L+ ++    
Sbjct: 978  LDAESVLKEFYLVRLEYYARRREFLLEQLQRSVLKLENMVRFVN 1021


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/442 (22%), Positives = 186/442 (42%), Gaps = 36/442 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +AVS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 735  LYDKDTRAVSFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 793

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+ S+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 794  VAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 851

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V   +   VDE+ + F    N+   EP  +    P +L NG  GI    
Sbjct: 852  SPRYIFTQLNPVTRALFPAVDENVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 910

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP++N +EI +    LI   E            P  P       + E + ES  +  
Sbjct: 911  STKIPNYNPREIVDNMRRLIRGEE----------PKPLIPWFKNFRGTIEKLDESRYICS 960

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +           G   I +TE+P +       E + E ++    K+ PL++D ++ 
Sbjct: 961  GEIALL----------GDDTIEITELPIRTWTQNYKESVLESMLEGSDKQPPLIQDFKEY 1010

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   N +   +  ME +  +  ++T   ++  VL      + +   ++ I K
Sbjct: 1011 HTDTTVKFVVKMNPAKLREAKMEGLHKIFKLQTAINISSMVLFDPLGCLRRFSNVEEICK 1070

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R++    R +F+   +  + E L     A   +++I   I  E+K K V+V +  
Sbjct: 1071 EFFEIRKKKYIERKAFQEGMLRAQSERLSN--QARFILEKIKGEILIENKRKAVIVEQLV 1128

Query: 423  LTENQVDAILNLR-LRSLRKLE 443
                  D +   + L+  R+LE
Sbjct: 1129 KKGFDPDPVKKWKELQRKRELE 1150


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 182/456 (39%), Gaps = 49/456 (10%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V +     + HG+ S+ D++V+LA  +       L+   G FG   + G  A+  RY
Sbjct: 698  AAYVAD--KSAYHHGEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  +
Sbjct: 756  IFTKLTKEARKIFDPRDDPILNYLD-DDGRSIEPDFYMPTIPMVLVNGTEGIGTGFSCYV 814

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF- 250
            P  N ++I E                             +   S + +   +R  +G   
Sbjct: 815  PPFNPKDIKENIQR------------------------ALEGHSFKDMSPWFRGFKGKIF 850

Query: 251  RVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            +    W  E V R +   + VTE+P         E +  LI  K I       + + EDV
Sbjct: 851  KEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDILIEKKVISGFT--NNSTTEDV 908

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHR 368
               +           +++ + +     T    NM++   +  + +    + ILK+++  R
Sbjct: 909  DFEI----MGYTGKDILKDLKLRKSFHTS---NMHLFHPVKGIYKYSSPEEILKDFVDLR 961

Query: 369  REVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             E   RR    ++ ++ R ++   K   +  +   +I+   R +D  +  +   F     
Sbjct: 962  LEHYKRRREHLIKVLEVRSKMCGYKSKFVTMVIEGQIVVFKRKKDDLERQLAGIFPKING 1021

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              D +LN++        E  ++  L      +E+++
Sbjct: 1022 TYDYLLNIKTVQYT---EECVRELLKESKQAREELE 1054


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
          Length = 1126

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 153/393 (38%), Gaps = 41/393 (10%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++++ + +S    + +  + ++ +   +R+IP++ DG KP  R+I+ A  +  L  
Sbjct: 653  PGTYLDQSAEKISYADFINKELILFSRAD-LDRSIPNVLDGLKPGQRKIMFACFKRNLKK 711

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E     + HG+QS+  ++V LAQ F       L+   G FG     G 
Sbjct: 712  DIKVAQLSAYVAE--HSAYHHGEQSLASTIVNLAQDFVGSNNINLLHPSGQFGTRLQGGK 769

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY   R+ ++   +    D+  + +      +  EP  +    P +L NG  GI 
Sbjct: 770  DAASARYIYTRLEKLTRHLFNEHDDVLLKYL-NEEGQSIEPEWYLPILPTVLVNGAEGIG 828

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      L++  E                TG I     +S   SY 
Sbjct: 829  TGWSTFIPNYNPRDIIANLRRLLNGEEQD-----PLHPWYRGFTGTITEVPHKSGSRSYV 883

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  GG   +          G   I VTE+P +       E +  L+        PL+ D 
Sbjct: 884  V--GGLVAQT---------GPNTIEVTELPVRKWTQDYKEFLETLLRPQDKDEAPLIADY 932

Query: 302  RDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--------VP 352
             +  ++ +V  V+        P  L E +     +E +F L   V +           + 
Sbjct: 933  HEHHSDSNVHFVVELL-----PGKLDELLATPGGLEAKFKLQAKVTTSNMMLFQKDGIIK 987

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
                 + I+ E+   R +   +R    ++    
Sbjct: 988  HYQSPEAIIAEFFELRLDYYEKRRIAMLRFAQM 1020


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 177/454 (38%), Gaps = 45/454 (9%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V +     + HG+ S+ D++V+LA  +       L+   G FG   + G  A+  RY
Sbjct: 698  AAYVAD--KSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPVLNYLD-DDGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N ++I E     ++                DF          +  V         F+
Sbjct: 815  PPFNPKDIKENIQRSLEG--------------HDFKEMKPWFRGFKGKV---------FK 851

Query: 252  VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                W  E V R +   + VTE+P         E +  L+  K I    +       D  
Sbjct: 852  EDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLVEKKVISGFTNNSTTEDVDFE 911

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            I+ +   + +  DL M   F  S+M    P          + +    + ILK+++  R +
Sbjct: 912  IMGYT-GKDVLKDLKMRKSFHTSNMHLFHPTKG-------IYKYSSPEEILKDFVDLRLD 963

Query: 371  VLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               +R    ++ +  +  +   K   +  +   +I+   R +D  +  +   F       
Sbjct: 964  HYKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTY 1023

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            D +LN++        E  ++  L      +E+++
Sbjct: 1024 DYLLNIKTVQYT---EECVRELLREAKQAREELE 1054


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 177/456 (38%), Gaps = 61/456 (13%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ +      PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRD-DDGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L     +S E+L          TG I           
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQPMKPWYFGFTGTIE---------- 870

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F       V    R    + +TE+P      +  + + +L   + +    +  
Sbjct: 871  -EREKGKFVSSGCATV----RPDGVVHITELPIGTWTQQYKKFLEDLREREIVIQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + + P         ++        +E R  L   + +          ++ + 
Sbjct: 926  TDVTVDFEVFIHP--------EVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKP 413
            +  + +LKE+   R E   RR  F ++ + R    L+ ++      ID    + R   K 
Sbjct: 978  LDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIVTRRSMK- 1036

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                           D + +L+ R        Q K 
Sbjct: 1037 ---------------DVLKDLKQRGYTPFPPQQKKK 1057


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/147 (58%), Positives = 116/147 (78%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIP 192
            V P+K PNLL NG+SGIAVGMAT+  
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFL 154


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 176/413 (42%), Gaps = 32/413 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 647  NVNESMDYSVRQVSYRDFVDKELILFSIADC-ERSIPSAIDGFKPGQRKILFSCFKRNLV 705

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 706  NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 763

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R+  VA  I    D+  V+++D  +    EP  +    P +L NGT+GI
Sbjct: 764  KDHAAGRYIFTRLMHVARAIFHPADDFVVEYKD-DDGLSVEPFYYIPVIPMVLVNGTTGI 822

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP++N  E+      L+   E+       + + P +      +E +E      
Sbjct: 823  GTGFSTSIPNYNPLEVIRNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE------ 869

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F    R+ V    R    + +TE+P  V      + + ++   + +    +   
Sbjct: 870  ---PGKFISHGRYEV----RPDGVVCITELPIGVWTQTYKKFLEDMREKELVVQYREHTT 922

Query: 304  ESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +   D  + L P    + +  D++ E + +   +     +  N    G++ +    + +L
Sbjct: 923  DVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFN--KEGQITKYWDAESVL 980

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            K++   R +   +R  + +  + R    L+ ++     + E   ++    K +
Sbjct: 981  KDFYLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKE 1033


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/567 (15%), Positives = 190/567 (33%), Gaps = 80/567 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  ++   ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 681  EDYLYGQSTSYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 739

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 740  EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 797

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY    ++ +A L+    D+  + F    + +  EP  +      +L NG  GI 
Sbjct: 798  DSASPRYIFTMLSPLARLLFPPKDDHTLRFLY-DDNQRVEPEWYNPINTMVLINGAEGIG 856

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  +  
Sbjct: 857  TGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQY 906

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            +  G   +     +E          ++E+P +       E++ E ++    K   L+ D 
Sbjct: 907  VINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDY 956

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDG 359
            R+   +     +         +     +  +  +++    N  VL      + +   +  
Sbjct: 957  REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLD 1016

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++ 
Sbjct: 1017 ILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1074

Query: 420  RFSLTENQVD---------------------------------------AILNLRLRSLR 440
                     D                                        +L++ L  L 
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLT 1134

Query: 441  KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRRR 496
            K ++ ++  + +    E   +     S    W         E+  V+    +   +G   
Sbjct: 1135 KEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLPG 1192

Query: 497  TTFCEVSRADKATLQQAMIEKEPITVV 523
                   +  +         +    + 
Sbjct: 1193 KAGKAKGKKAQMCADVLPSPRGKRVIP 1219


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/159 (50%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
           + + +D +D++D Y+  + EP V PS+FPNLL NG +GIAVGMAT+IP H + E+ E  L
Sbjct: 2   RDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVL 61

Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
           A+ +NPEI+I++L+EYI GPDFPT G I+  R  I ++Y  GRG   +RA+  +EE   G
Sbjct: 62  AVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSG 120

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              I+VTE+PYQV K+RLIEKIA+L+  K+I  + D+RD
Sbjct: 121 KERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
          Length = 1074

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 174/454 (38%), Gaps = 43/454 (9%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            NV+ +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 639  NVRNLSISNFVHKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V E     + HG+ S+ D++V+LA  +       L+   G FG   + G  A+  RY
Sbjct: 698  AAFVAE--KSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPILNYLD-DDGRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N ++I +     ++    +  +            G I  E                 
Sbjct: 815  PPFNPKDIKDNIQKALEGHGFTQMR-----PWFKGFKGKIFKEDESG------------- 856

Query: 252  VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                W  E +   +   + +TE+P         E +  L+  K I    +       D  
Sbjct: 857  ---SWIAEGIWHDTGSRLKITELPPGRWTQDYKEYLDTLVEKKVITNFTNNSTTDDVDFE 913

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            IV +   + L  DL +   F  S+M    P          + +    + ILK+++  R +
Sbjct: 914  IVGY-SGKDLVKDLKLRKSFHTSNMHLFHPTKG-------IYKYNSPEEILKDFVDLRLD 965

Query: 371  VLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               +R    ++ +  +  +   K   +  +   +I+   R  D  +  +   F       
Sbjct: 966  HYKKRREHLIKVLQTKATMCGYKSKFVTMVIEGDIVVFKRKRDDLERQLSQLFPKIGGTY 1025

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            D +LN++        E  ++  L      +++++
Sbjct: 1026 DYLLNIKTVQYT---EESVRELLKEAKQARDELE 1056


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 125/154 (81%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIAVGMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V 
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 101 LAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   ++
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206
               EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+AL
Sbjct: 121 GTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 177/456 (38%), Gaps = 61/456 (13%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ +      PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRD-DDGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L     +S E+L          TG I           
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQPMKPWYFGFTGTIE---------- 870

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F       V    R    + +TE+P      +  + + +L   + +    +  
Sbjct: 871  -EREKGKFVSSGCATV----RPDGVVHITELPIGTWTQQYKKFLEDLREREIVIQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + + P         ++        +E R  L   + +          ++ + 
Sbjct: 926  TDVTVDFEVFIHP--------EVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKP 413
            +  + +LKE+   R E   RR  F ++ + R    L+ ++      ID    + R   K 
Sbjct: 978  LDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIVTRRSMK- 1036

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                           D + +L+ R        Q K 
Sbjct: 1037 ---------------DVLKDLKQRGYTPFPPQQKKK 1057


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/456 (21%), Positives = 177/456 (38%), Gaps = 61/456 (13%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L
Sbjct: 650  TNINESMNYNVRNVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ +      PL+   G FG     
Sbjct: 709  VRSLKVAQLAGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+G
Sbjct: 767  GKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRD-DDGLSVEPFYYVPVIPMVLVNGTAG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  ++ +    L     +S E+L          TG I           
Sbjct: 826  IGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQPMKPWYFGFTGTIE---------- 870

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F       V    R    + +TE+P      +  + + +L   + +    +  
Sbjct: 871  -EREKGKFVSSGCATV----RPDGVVHITELPIGTWTQQYKKFLEDLREREIVIQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + + P         ++        +E R  L   + +          ++ + 
Sbjct: 926  TDVTVDFEVFIHP--------EVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKP 413
            +  + +LKE+   R E   RR  F ++ + R    L+ ++      ID    + R   K 
Sbjct: 978  LDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIVTRRSMK- 1036

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                           D + +L+ R        Q K 
Sbjct: 1037 ---------------DVLKDLKQRGYTPFPPQQKKK 1057


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/143 (57%), Positives = 111/143 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR++ AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY L+ GQGNFG++DGDSAAA RYTE RM +++  +L  +D++ VD+   Y+  
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 162 DSEPVVFPSKFPNLLANGTSGIA 184
           +  P V P+K PNLL NG+SGIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 171/413 (41%), Gaps = 34/413 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++   + ++ +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRYKDFIDRELIHFSNADNL-RSIPSLCDGLKPGQRKILFSCFKRNLK 707

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDG 123
                  +    V E     + HG+QS+  +++ +AQ F       L+   G FG  N  G
Sbjct: 708  SEIKVAQLIGYVAE--HSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQGG 765

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    ++++  ++    D+  + + +  + +  EP  +    P  L NG+SGI
Sbjct: 766  KEHASARYIFTSLSKITRILFPEHDDHVLKYLE-DDNQVVEPEWYMPIIPMCLVNGSSGI 824

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP++N +EI E     ++    +     E         G I +  +       
Sbjct: 825  GTGWSTDIPNYNHKEIVEQIRGKLEGKPFT-----ELHPWYKGFQGQIEINPK------- 872

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLE 299
                GG+ V+ ++ ++EV      I +TE+P           + EL+   +    I  + 
Sbjct: 873  ----GGYIVKGQYEIDEV---EETIKITELPVGKWTRDYKNYLEELLSPPKGEPEIEDIR 925

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +    +     +   P       D + + + + + M+T   +  N     ++ +      
Sbjct: 926  EYHTNNRVHFEVQAIPGRIQQWGD-IEKKLKLSTTMQTTNIVMFN--DKYKLKRYQSTVE 982

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            I++E+ A R +   +R  + +  I R V+IL+  +     +      IRN  K
Sbjct: 983  IMEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKFITLVVNGTLEIRNARK 1035


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 137/563 (24%), Positives = 234/563 (41%), Gaps = 67/563 (11%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAA 127
                K A + G+ +   HPHGD  + ++LV +A     R  L+  QGNFGNI  GD AA
Sbjct: 3   DGKLHKVANVAGQTMA-YHPHGDAPITEALVNMA----NRGYLLDQQGNFGNIFTGDPAA 57

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY E R+  +A+  L   + D   +  +Y+    EP+V P+K P LL  G +GIAVGM
Sbjct: 58  AARYIETRLAALAKETLF--NPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGM 115

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +TSI  HN +E+ EA        EI+I +  E+ + PDFPTGGI+  S       Y  GR
Sbjct: 116 STSILPHNFEELLEA--------EIAILEDREFSVFPDFPTGGIMDASD------YNQGR 161

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G  ++RA+  V    R    +V+TEI Y      LI  I E     +I  ++ I D +AE
Sbjct: 162 GKVKLRAKIEV----RDPKTLVITEICYGTTTESLIRSIDEAAKRGKIK-IDAINDYTAE 216

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA- 366
            V I +    R    + L+++++  ++ E      + V+    +P    +D ILK     
Sbjct: 217 KVEIEI-KLPRGQYAEELIQALYAYTECEVAIHSQIVVI-KDDLPWETDVDSILKLHAEK 274

Query: 367 ----HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII------AIIRNEDKPKPV 416
                R E+   R  F+ +   + +E +      Y NI+          II     P   
Sbjct: 275 LQEYLRIELELERDRFKEKIFAKTLEQIFIENRLYKNIENATSYEKVHEIIEKGLMPFHD 334

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            ++R     +  + +L++ +R + K +  +  SE+  +  +      L+   K   N   
Sbjct: 335 QLTRIP-HYDDREGLLSIPIRRISKFDLEKNLSEIHAIDKQ------LIEVEKHLKNVKK 387

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
             I  ++ + +K      RRT    +             E+  +  + + +  +    S 
Sbjct: 388 FTIHYLRGLLTKYAKDYPRRTEITSI-------------EEINMRAIATRKMTVGFDPST 434

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
               + +  K      ++      D++L+L  DG    +        +   + +   +  
Sbjct: 435 GFLGTKVTGK------LSFECTNFDKVLILFDDGTYTVINIPEKQYLQTDHKKVV-YVGC 487

Query: 597 NHNQDIVTAFVYDSTCKLLVVSS 619
              + +++  V D          
Sbjct: 488 ADKKTVISVLVKDPKSHFCFAKR 510


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 177/454 (38%), Gaps = 45/454 (9%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +VK +S+   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSLADLK-RSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V +     + HG+ S+ D++V+LA  +       L+   G FG   + G  A+  RY
Sbjct: 698  AAYVAD--KSAYHHGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A  I    D+  +++ D  +    EP  +    P +L NGT GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPVLNYLD-DDGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N ++I E     ++                DF          +  V         F+
Sbjct: 815  PPFNPKDIKENIQRSLEG--------------HDFKEMKPWFRGFKGKV---------FK 851

Query: 252  VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                W  E V R +   + VTE+P         E +  L+  K I    +       D  
Sbjct: 852  EDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISGFTNNSTTEDVDFE 911

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            I+ +   + +  DL M   F  S+M    P          + +    + ILK+++  R +
Sbjct: 912  IMGYT-GKDVLKDLKMRKSFHTSNMHLFHPTKG-------IYKYSSPEEILKDFVDLRLD 963

Query: 371  VLFRRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
               +R    ++ +  +  +   K   +  +   +I+   R +D  +  +   F       
Sbjct: 964  HYKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTY 1023

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            D +LN++        E  ++  L      +E+++
Sbjct: 1024 DYLLNIKTVQYT---EECVRELLREAKQAREELE 1054


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 96/557 (17%), Positives = 194/557 (34%), Gaps = 95/557 (17%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               L     + +S    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 817  EQYLYGSQARHLSYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCLKRNDKR 875

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E+    + HG+Q++  ++V LAQ F       ++   G FG     G 
Sbjct: 876  EVKVAQLAGSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGK 933

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +A+L+   VD + + F    + +  EP  +    P +L NG  GI 
Sbjct: 934  DAASPRYIFTMLSPLAKLLFPAVDSNLLKFLY-DDNQKVEPEWYIPIIPMVLVNGAEGIG 992

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G A  IP+++V+EI      +     +S ++ L+ +       G I           + 
Sbjct: 993  TGWACKIPNYDVREIVNNINRM-----LSRQEPLQMLPSYKGFKGVI-----------HE 1036

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
            LG+  + V     V +       + +TE+P +       E + E ++    K   L+ D 
Sbjct: 1037 LGQNQYLVSGEVSVID----KNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDY 1092

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL------------SMG 349
            ++   +     L   +           +  +  +++    N  V              MG
Sbjct: 1093 KEYHTDTTVKFLVRMSEEKLAQAEAAGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMG 1152

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRS------------------SFRMQAIDRRVEILK 391
             + +   +  ILKE+   R      R                    F ++ I+ ++ I  
Sbjct: 1153 CLKRYESVQDILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKISIEN 1212

Query: 392  GLLIAYLNI------------------DEIIAIIRNEDKPKPVMVSRFSLTEN------- 426
                  + +                  ++ +   +++ +P+           +       
Sbjct: 1213 KSKRELIRMLVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSLDSGS 1272

Query: 427  ----QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
                  + ILN+ L  L K +  ++  + D    E  ++     S +  W     ++   
Sbjct: 1273 SSGPNFNYILNMPLWCLTKEKVEELLKQRDLKRGELNELQR--KSPEDLW---KEDLAVF 1327

Query: 483  KEIFSKSTDLGRRRTTF 499
             E   K   + R   + 
Sbjct: 1328 VEELEKLEAVEREELSL 1344


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 111/145 (76%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY++
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   
Sbjct: 61  IVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSG 182
           Y+  +  P V P+K P LL NG+SG
Sbjct: 121 YDGTEMIPAVMPTKVPTLLVNGSSG 145


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 191/559 (34%), Gaps = 93/559 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 671  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVK 729

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                 + +  V E     + HG+QS+  ++  +AQ F       L+   G FG  D  G 
Sbjct: 730  EIKVAQFSGYVSE--HSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGK 787

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +   I    D+  +++ D  + +  EP  +    P +L NG+ GI 
Sbjct: 788  DAASARYIFTLLSPITRSIFPKDDDILLNYLD-EDGQSIEPTWYVPILPMVLVNGSEGIG 846

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      L+++  +                        +  ++   
Sbjct: 847  TGWSTFIPNYNPRDIVANLRRLLNDEPVEPMD--------------PWYRGFKGSIQKTG 892

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------------- 289
               GG        +E V      + +TE+P +       E +  +               
Sbjct: 893  TKAGGVSYTVTGIIEVVDD--TTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGK 950

Query: 290  ----------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
                            P +E     S +     L   ++      L E +     + T  
Sbjct: 951  GKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTI 1010

Query: 340  PLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                  L  S G++ +    + ILKE+   R E   +R    ++ I+  ++ L   +   
Sbjct: 1011 GTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFI 1070

Query: 398  LNIDEIIAIIRNED-------------KPKPVMVSRFSLT-------------------- 424
            L + E   I+ N                P P    R   +                    
Sbjct: 1071 LAVVEGDIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANV 1130

Query: 425  -ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEI 479
              +  + +L++ + +L      Q+ +E   +  E  ++       K  W    +    E+
Sbjct: 1131 GSSDYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELKR--TRPKSLWMRDLDAFEKEL 1188

Query: 480  REVKEIFSKSTDLGRRRTT 498
              + E    S D   RR T
Sbjct: 1189 DALDEK--DSMDAEERRAT 1205


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 174/473 (36%), Gaps = 42/473 (8%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    L   +      YA+ T++ RAIP+L DG KPV R +++   ++       F K A
Sbjct: 3   LTDRELTQIINNEAKIYAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKLA 62

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            + G V    + HG+ S  ++   +A  +   +P + GQGNFG+     AAA RY   R+
Sbjct: 63  SVAGGVADAGYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFCRV 122

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
           ++    + +  +          + E   P  +    P +L NG  GIA G +TSI  H+ 
Sbjct: 123 SENFNKVYKDTEIAPEH----EDLEHLPPRFYLPIIPTVLLNGVRGIATGYSTSILPHDF 178

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           + I       ++   +S    +  +  P F              E Y      + +   +
Sbjct: 179 ESIVRCTEQALNGETVS----MPTVAFPQFRG------------EVYCTEPNKYELHGTY 222

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
                      + ++EIPYQ  +++ +EK+ + +    +  +    D S E     +  +
Sbjct: 223 NF----TSKTQMYISEIPYQFDRAKYVEKVLDPLEDAGL--ITYDDDCSKEGFGFKIKFR 276

Query: 317 NRSL---DPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREV 371
                  D   L E I     +  R   N+ V+        +      +++ ++  R   
Sbjct: 277 KDYKLPTDVTELDEKIKRDFKLVERVSQNIVVIDENGKLHDRFENSAQLVEHFVKVRLSF 336

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV--- 428
           + +R  F ++      E+      A    +     I+ + K +  +    +         
Sbjct: 337 VEKRIGFMIEKSKHAFEL--AYAKALFIREVTNEKIQVKGKKRSELKEELAQLPALAGFE 394

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK------IDSLLNSGKQQWNQI 475
           D +L + +  + + E   +  +      + +       +    N  K+  + +
Sbjct: 395 DQLLAMNIFHMTEDEMANLLKKAKEAKEQMDYWKSTDALTEYKNDIKELKSIL 447


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 191/559 (34%), Gaps = 93/559 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 633  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVK 691

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                 + +  V E     + HG+QS+  ++  +AQ F       L+   G FG  D  G 
Sbjct: 692  EIKVAQFSGYVSE--HSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGK 749

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +   I    D+  +++ D  + +  EP  +    P +L NG+ GI 
Sbjct: 750  DAASARYIFTLLSPITRSIFPKDDDILLNYLD-EDGQSIEPTWYVPILPMVLVNGSEGIG 808

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      L+++  +                        +  ++   
Sbjct: 809  TGWSTFIPNYNPRDIVANLRRLLNDEPVEPMD--------------PWYRGFKGSIQKTG 854

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------------- 289
               GG        +E V      + +TE+P +       E +  +               
Sbjct: 855  TKAGGVSYTVTGIIEVVDD--TTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGK 912

Query: 290  ----------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
                            P +E     S +     L   ++      L E +     + T  
Sbjct: 913  GKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTI 972

Query: 340  PLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                  L  S G++ +    + ILKE+   R E   +R    ++ I+  ++ L   +   
Sbjct: 973  GTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFI 1032

Query: 398  LNIDEIIAIIRNED-------------KPKPVMVSRFSLT-------------------- 424
            L + E   I+ N                P P    R   +                    
Sbjct: 1033 LAVVEGDIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANV 1092

Query: 425  -ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEI 479
              +  + +L++ + +L      Q+ +E   +  E  ++       K  W    +    E+
Sbjct: 1093 GSSDYEYLLSMAIGTLTLERVQQLIAEKSRMENEVAELKR--TRPKSLWMRDLDAFEKEL 1150

Query: 480  REVKEIFSKSTDLGRRRTT 498
              + E    S D   RR T
Sbjct: 1151 DALDEK--DSMDAEERRAT 1167


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 191/559 (34%), Gaps = 93/559 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 633  SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVK 691

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                 + +  V E     + HG+QS+  ++  +AQ F       L+   G FG  D  G 
Sbjct: 692  EIKVAQFSGYVSE--HSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGK 749

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +   I    D+  +++ D  + +  EP  +    P +L NG+ GI 
Sbjct: 750  DAASARYIFTLLSPITRSIFPKDDDILLNYLD-EDGQSIEPTWYVPILPMVLVNGSEGIG 808

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +T IP++N ++I      L+++  +                        +  ++   
Sbjct: 809  TGWSTFIPNYNPRDIVANLRRLLNDEPVEPMD--------------PWYRGFKGSIQKTG 854

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------------- 289
               GG        +E V      + +TE+P +       E +  +               
Sbjct: 855  TKAGGVSYTVTGIIEVVDD--TTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGK 912

Query: 290  ----------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
                            P +E     S +     L   ++      L E +     + T  
Sbjct: 913  GKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTI 972

Query: 340  PLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                  L  S G++ +    + ILKE+   R E   +R    ++ I+  ++ L   +   
Sbjct: 973  GTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFI 1032

Query: 398  LNIDEIIAIIRNED-------------KPKPVMVSRFSLT-------------------- 424
            L + E   I+ N                P P    R   +                    
Sbjct: 1033 LAVVEGDIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANV 1092

Query: 425  -ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEI 479
              +  + +L++ + +L      Q+ +E   +  E  ++       K  W    +    E+
Sbjct: 1093 GSSDYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELKR--TRPKSLWMRDLDAFEKEL 1150

Query: 480  REVKEIFSKSTDLGRRRTT 498
              + E    S D   RR T
Sbjct: 1151 DALDEK--DSMDAEERRAT 1167


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/136 (57%), Positives = 107/136 (78%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 146 GVDEDAVDFRDTYNEE 161
            ++++ VDF D Y+  
Sbjct: 121 DLEKETVDFVDNYDGT 136


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPH D S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 200/500 (40%), Gaps = 39/500 (7%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +   V+ ++K +S    + +  + Y+ +    R+IP + DG KP  R+I++A  +  L  
Sbjct: 760  TQLSVDHSIKELSFDDFINKELIHYSWAA-NHRSIPSVMDGLKPGQRKILYAAFKRKLTS 818

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + +  V E     + HG+QS+  ++V++AQ F      PL++  G FG     GD
Sbjct: 819  EIKVAQFSGYVAEHTA--YHHGEQSLSSTIVKMAQDFVGSNNIPLLTSGGQFGTRLQGGD 876

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             +A+ RY   ++  +  LI   +D+D + + +    E  +P  +    P +L NG+ GI 
Sbjct: 877  DSASPRYIFTKLNSITRLIFNDLDDDLLKYLE-EEGEMIQPNYYVPILPMILVNGSDGIG 935

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            VGM+ S+P ++  ++ +  L L++N +    ++   +      TG I+  S         
Sbjct: 936  VGMSNSVPLYSPIDLIDYLLNLLNNQK----QMKALVPWYRGFTGTIVRGSNA------- 984

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
               G F+         + R    +V++++P           + +L+    I    D   E
Sbjct: 985  -VNGSFKTSGV-----ITRVGRTLVISDLPIGKWTVDYKVVLNDLVEKDFIKSYHDGNTE 1038

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKE 363
            ++    I           ++    +     + +    N+ +  + G + +    + I+ E
Sbjct: 1039 NSVSFTIHFTNDQLEEIDEMTDNELIDKFKLNSSLHSNLMLFDTNGNIKKYESTEEIIGE 1098

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI--------DEIIAIIRNEDKPKP 415
            +  +RR++   R       + ++++     +     I         +   +I  E     
Sbjct: 1099 FFQYRRKLYVDRKKMLQDRLKKQIDKFNVTIQFISLIASGKVKLGGKTKQLIIEELHKNK 1158

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              ++     E   + + NL +  + + +   +     NL    E+ + + +    Q    
Sbjct: 1159 FKLAPNQNQEEMFNYLFNLPILDMTQEKIDTLTQ---NLSKRTEEFNFIQSQESDQLW-- 1213

Query: 476  ACEIREVKEIFSKSTDLGRR 495
              +++++K+   K     R+
Sbjct: 1214 KTDLQQLKDFLLKDKTYKRK 1233


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 170/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+    R+IP + DGFKP  R++++   +  L 
Sbjct: 656  EPGTVLDPTLNEIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYTCFKKNLT 714

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DG 123
                    A  V +     + HG+Q++  +++ +AQ FV       +   G FG     G
Sbjct: 715  TEKKVANLAPAVSDYTA--YHHGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGG 772

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++A  +    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 773  KDAAAARYIYTELNKIARKVFHPADDPLFRYVQ-EDEKTVEPEWYLPVVPMVLINGAEGI 831

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP  N  ++      L+++ E+           P F         R       
Sbjct: 832  GTGWSTSIPPFNPLDVVNNIRHLLNDEEMDDM-------HPWF---------RGWTGTME 875

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
            ++    +R+  R  +E+V  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 876  KIESQRYRMYGR--IEQV--GPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM 931

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
             ++ AE ++ ++   +  +     +        +      NM       ++ +   +  I
Sbjct: 932  EEQHAETIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHVHEI 991

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            LK++   R E   +R  +    +    E L   +     I +   I+ N  KPK  ++S 
Sbjct: 992  LKDFYEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIIDKSLIVTN--KPKKQLISE 1049


>gi|255030685|ref|ZP_05302636.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 278

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 130/284 (45%), Gaps = 18/284 (6%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            V    + P++M +  +L  ++ H++E++ +RS + ++    R  IL+GL+ A   +DE+
Sbjct: 1   MVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV 60

Query: 404 IAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           I +IR        K  + +++  +E Q +AI++L+L  L   + ++++SE  +L  +   
Sbjct: 61  IKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISV 120

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           ++ +L    +    +  E+ E+K+ +  +      R T  +   A+     + ++  E +
Sbjct: 121 LEKILGDEAELIAVLKEELAEIKKKYKTA------RRTEVQAEIAEIKIDTEVLVANEDV 174

Query: 521 TVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577
            V ++  G+++     S   S    L  KE D        ++ D +LL ++ G     P 
Sbjct: 175 IVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPV 234

Query: 578 GNLLSGRGH--GEAIQLLI-DLNHNQDIVTAF---VYDSTCKLL 615
             L   R    G+ +  L  DL+  ++I +A     +    + L
Sbjct: 235 HELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFL 278


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 113/148 (76%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+GK HPHG+ ++YD+L R+AQP+ 
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            R PLI GQGNFG++DGD  AA RYTE R+ + A  +L  +D++ VDFRD Y+   SEPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+KFPNLL NG  GIAVGMAT+IP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 191/527 (36%), Gaps = 81/527 (15%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++   ++    + +  + ++ S   ER+IP L DG KP  R+++    +        
Sbjct: 688  LYGKSTTYLTYNDFINKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVK 746

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G  +A
Sbjct: 747  VAQLAGSVAEMSS--YHHGETSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSA 804

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A L    +D++ + F    + +  EP  +    P +L NG  GI  G 
Sbjct: 805  SPRYIFTMLSPLARLAFPVLDDNVLKFLF-DDNQRVEPEWYIPIIPMVLINGAEGIGTGW 863

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +  IP+++V+E+      ++D  E            P  P       + +S+ ++  +  
Sbjct: 864  SCKIPNYDVREVVNNIRRMLDGDE----------PLPMMPNYKNFKGTIDSVGQNQYVVN 913

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +     +E          ++E+P +       E++ E ++    K  PL+ D ++ 
Sbjct: 914  GEVSIIDSTTIE----------ISELPVRTWTQVYKEQVLEPMLNGTEKTPPLITDYKEY 963

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   +     +     +  +  +++       VL      + +    + IL+
Sbjct: 964  HTDTTVRFVIKMSEQKLAEAEAAGLHKVFKLQSSLACPNMVLFDHIGCLKKYETAEDILR 1023

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R      R  + +  +    E  K    A   +++I   I  E+KPK  ++    
Sbjct: 1024 EFYELRLRYYSLRKDWLVGML--GAESAKLNNQARFILEKIEGKIVIENKPKKELIKVLI 1081

Query: 423  LTENQVD--------------------------------------AILNLRLRSLRKLEE 444
                  D                                       +LN+ L  L K ++
Sbjct: 1082 QRGYDSDPVKKWKESQQKGSDDDSNEEGESEKENEPDASTGPDFGYLLNMPLWYLTKEKK 1141

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWN------QIACEIREVKEI 485
             ++  + D+   E E +     S    W         A +I+E KE 
Sbjct: 1142 DELCKQRDDKETELETLKR--KSPDDLWRHDLAVFVEALDIQEEKEK 1186


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 85/144 (59%), Positives = 115/144 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 161 EDSEPVVFPSKFPNLLANGTSGIA 184
            +  P V P+K PNLL NG+SGIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 167/450 (37%), Gaps = 40/450 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K V+    +    + ++      R+IP + DG KP  R++I    +        
Sbjct: 693  LYTKETKTVTYSDFVNLELVLFSNGDNV-RSIPSMIDGLKPGQRKVIFTCIKRNDKREVK 751

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+QS+  ++V LAQ +       L+  +G FG     G  +A
Sbjct: 752  VAQLAGSVAE--HSAYHHGEQSLAMTIVNLAQNYVGSNNINLLEPRGQFGTRLSGGKDSA 809

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 810  SPRYIFTLMSPLTRLIFHPHDDPLLVHEF-EDNQKIEPVYYLPIIPMVLVNGVEGIGTGW 868

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP++N ++I E    L+D  +         ++ P +      VE             
Sbjct: 869  STKIPNYNPRDIAENLRRLLDGEK-------PKVMHPWYKNFKGNVEGFGD--------- 912

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDES 305
              + +     +    +    I +TE+P         E + E  L   K  PL+ + R+ +
Sbjct: 913  -KYVISGEAAILPGDK----IEITELPVGTWTHNYKENVLEPMLGTDKVKPLISEYREYN 967

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKE 363
             +     +         ++  E I  +  ++T   +           + +   ++ IL+E
Sbjct: 968  TDTTVRFVVSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLEKYDKVEEILRE 1027

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
            +   R +   RR  +    +    + L     A   + +    +  E+K +  MV     
Sbjct: 1028 FYDLRVKYYVRRKDYLEGQLQAEADKLSN--QARFILKKCDKGLVIENKKRKAMVEELIK 1085

Query: 424  TENQVDAILNL-----RLRSLRKLEEYQIK 448
                 D I +      +++ L  LE+   +
Sbjct: 1086 RGYAPDPIADWKKRASKIQGLTALEDDDAQ 1115


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 200/518 (38%), Gaps = 48/518 (9%)

Query: 8    NSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +  TL + E +  V+ +  +++  + ++  +   RAIP   DG KP  R+++    +   
Sbjct: 664  DELTLYDREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRKD 722

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                   + +  V E+    H  G+ S+ D++++LAQ +       L+   G FG+  + 
Sbjct: 723  KSKVKVAQLSGSVSEMSAYHH--GEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVG 780

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTS 181
            G   AA RY   R+  +   +    D+    F+  Y++    EP  +    P +L NG+S
Sbjct: 781  GKDHAAARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSS 838

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP+HN+++  +    +     I  ++ L+ +   +   G I     ES+  
Sbjct: 839  GIGTGWSTNIPNHNIRDCIKNIRRM-----IEGKEPLDLVPFYEGYRGTI-----ESLGT 888

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---- 297
            +  +  G   +     VE          +TE+P QV      +K+ ++   +        
Sbjct: 889  ARAVSFGEIALLESDVVE----------ITELPPQVWTDDYKQKLMKMQGGQDDKGKELP 938

Query: 298  --LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-- 353
              +ED  + S+ D    +   + +   +   + +     +         ++      +  
Sbjct: 939  KLIEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLT 998

Query: 354  -VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNED 411
                   I+K+    R+    +R +F ++ ++ RV+ I         NI++ I ++  + 
Sbjct: 999  VYNNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKR 1058

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE----EYQIKSELDNLLAEKEKIDSLLNS 467
            K     +       + V A    ++R  + LE    E     E   L A+      LL+ 
Sbjct: 1059 KAIEAKLKERGYASDPVKA-WEKKVRKEQDLELSDDEEDAADENAQLEAK-SDYQYLLSM 1116

Query: 468  GKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSR 504
                      E + + K       D+ +++T       
Sbjct: 1117 PIYNLTLEKKEALLKEKGQIEHDFDVLKKKTPTDLWEE 1154


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 200/518 (38%), Gaps = 48/518 (9%)

Query: 8    NSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +  TL + E +  V+ +  +++  + ++  +   RAIP   DG KP  R+++    +   
Sbjct: 664  DELTLYDREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRKD 722

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                   + +  V E+    H  G+ S+ D++++LAQ +       L+   G FG+  + 
Sbjct: 723  KSKVKVAQLSGSVSEMSAYHH--GEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVG 780

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTS 181
            G   AA RY   R+  +   +    D+    F+  Y++    EP  +    P +L NG+S
Sbjct: 781  GKDHAAARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSS 838

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP+HN+++  +    +     I  ++ L+ +   +   G I     ES+  
Sbjct: 839  GIGTGWSTNIPNHNIRDCIKNIRRM-----IEGKEPLDLVPFYEGYRGTI-----ESLGT 888

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---- 297
            +  +  G   +     VE          +TE+P QV      +K+ ++   +        
Sbjct: 889  ARAVSFGEIALLESDVVE----------ITELPPQVWTDDYKQKLMKMQGGQDDKGKELP 938

Query: 298  --LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-- 353
              +ED  + S+ D    +   + +   +   + +     +         ++      +  
Sbjct: 939  KLIEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLT 998

Query: 354  -VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNED 411
                   I+K+    R+    +R +F ++ ++ RV+ I         NI++ I ++  + 
Sbjct: 999  VYNNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKR 1058

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE----EYQIKSELDNLLAEKEKIDSLLNS 467
            K     +       + V A    ++R  + LE    E     E   L A+      LL+ 
Sbjct: 1059 KAIEAKLKERGYASDPVKA-WEKKVRKEQDLELSDDEEDAADENAQLEAK-SDYQYLLSM 1116

Query: 468  GKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSR 504
                      E + + K       D+ +++T       
Sbjct: 1117 PIYNLTLEKKEALLKEKGQIEHDFDVLKKKTPTDLWEE 1154


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
          Length = 1178

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 176/477 (36%), Gaps = 45/477 (9%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            +T V+ N    +    + E  + Y+   ++ R++P++ DG KP  R+++  M        
Sbjct: 706  STAVDSNRNQKTFSEFVNEELVEYSQLDLR-RSLPNVVDGLKPSQRKVLFTMFGRYERGE 764

Query: 70   AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV----QRYPLISGQGNFGNIDGDS 125
                + A  V +  G  + HG++S+ +++VRLAQ FV        L  GQ       G+ 
Sbjct: 765  IRVSQLAGAVSQYCG--YHHGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGED 822

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
             A+ RY    ++ +A  I    D+  +           EP  +    P +L NG  GI  
Sbjct: 823  VASARYIYTSLSPLARAIFPHPDDKVLK-NLVEENALVEPEWYCPIIPMILINGAEGIGT 881

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G AT I     +++   A  LID                  P   ++   R+     Y  
Sbjct: 882  GWATKILPRCPRQVISNAQRLIDGR----------------PLQDMLPHFRKFQGTIYET 925

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LIIAKRIPLLEDIRDE 304
                + +  +     +  G   I +TE+P  +  ++  EK+ +  I    I   E++  E
Sbjct: 926  APRQYSISGKVSYRRLKSGLRAI-ITELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTE 984

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            S     + +  K    D   + +++  L  + +    N  +L      + +      I +
Sbjct: 985  SNVHFILHVIDKPLLSDKKQI-KALNRLLKLRSVASENSMILFDEKNVLQKYDSTREIFQ 1043

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------- 413
            E+   RR+    R    +  ++ +++ ++  +     I     II+ +++          
Sbjct: 1044 EFFEVRRQKYIERRECELVIMEGKLKFIENQVRFVNAIINGEIIIKKKNRAEIIAQLAEK 1103

Query: 414  -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                   K    +  +        +L++ L  L   E   ++ +   L    + + S
Sbjct: 1104 GFDSNPMKAKNATDGNCNPPDFAYLLDMPLCRLSNEEILVLQEKRSQLWERFKSLKS 1160


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 20/255 (7%)

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            V+    R    ++++ ++F  + ME+ F + M  +     P++  L  +L  +L HR+ 
Sbjct: 1   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKIFSLLELLNLFLTHRKT 59

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427
           V+ RR+ F +Q    R  IL+GL IA  NIDE+IA+I+N    +  +  +V++F L+E Q
Sbjct: 60  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQ 119

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +AIL+++L  L  LE  +I++EL  L+ E  +++ +L S     N I  E++E++  F 
Sbjct: 120 ANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFD 179

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVD 539
                        ++         + +I  E + V I++RG+I+          K     
Sbjct: 180 VP--------RITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKG 231

Query: 540 LSALHFKEGDSLKIA 554
             A+   + D ++  
Sbjct: 232 KLAVTTYDDDFIESF 246


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQ 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 176/427 (41%), Gaps = 30/427 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYNVYKDTEYAPVHQ----DKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKN 317
                    + +TEIPY+  +   + KI + +  K     +D   E     ++      +
Sbjct: 226 ------RTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRS 376
            S + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILNL 434
             +++  +    +          +     I+      K +      +      VD ++ +
Sbjct: 340 DNKIKETESAFRLAFAKAHFIKKVISG-EIVVQGKTRKELTEELSKIDMYSSYVDKLVGM 398

Query: 435 RLRSLRK 441
            +  +  
Sbjct: 399 NIFHMTS 405


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/441 (21%), Positives = 181/441 (41%), Gaps = 31/441 (7%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L+  ++   LAYA+ T++ RAIP++ DGFKPV R ++    +M       F K A I G 
Sbjct: 8   LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  ++   +A  +   +PL+ GQGNFG+     AAA RY  AR+     
Sbjct: 68  VADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARIGTNFA 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      + E   P  +    P +L NG SGIA G AT+I  H+   + +
Sbjct: 128 KVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHSFDSVKK 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
           A L ++    ++  K+                E R  +V    +  G + +R  +     
Sbjct: 184 AVLQVLQEKRVTKPKVA-------------YPEFRGDVV---EIEPGSYELRGTYKF--- 224

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKNRSL 320
                 + +TEIPY+  +   + K+ + +  K     +D  DE+    ++ +        
Sbjct: 225 -TSRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGFGFKVKIRKEYELPT 283

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREVLFRRSSFR 379
           + +   E I     +  R   N+ V++     +    +  ++++++  R+  + +R    
Sbjct: 284 EENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKTFVQKRI--D 341

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDAILNLRL 436
            + I+        L  A    D I  ++  + K + V+        +     D ++ + +
Sbjct: 342 GKIIETEEAFKLALAKATFIKDVIDGVVVIQGKTRKVLTEELASNKVYGEYADKLVAMNI 401

Query: 437 RSLRKLEEYQIKSELDNLLAE 457
             +   E  ++  E      E
Sbjct: 402 FHITSDEAKKLALEAKAKKEE 422


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/526 (19%), Positives = 197/526 (37%), Gaps = 69/526 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++ N   +     + +  + ++++    R+IP + DG KP  R++ + M +     
Sbjct: 757  PGTYLDHNTDRIPYADFINKELILFSMADNL-RSIPSVVDGLKPGQRKVFYVMFD---RK 812

Query: 69   GAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
              A  K   +VG V+G+  + HGD ++  ++V LAQ F       L+  +G FG     G
Sbjct: 813  SNAELKVNTLVGHVMGQAAYHHGDAALVMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGG 872

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY    + ++   +    D+  +D+ D  + +  EP  +    P +L NG  GI
Sbjct: 873  KDAASGRYIFTALPKITRALFPQADDALLDYLDD-DGQKVEPHWYIPVVPQVLMNGAEGI 931

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TS+P++N  EI           +I   K       P F      VE         
Sbjct: 932  GTGWSTSVPNYNPHEIVANLRRRTAGEDIIPMK-------PWFRGFTGDVE--------- 975

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDI 301
                G F+V  R    ++   +W   +TE+P +   S   E + E I+   K    ++D 
Sbjct: 976  EFSPGRFKVSGRVT--QIDEKTW--EITELPIRTWTSNYKESLEERIVSSEKAQATIKDY 1031

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
            ++   E     +         ++  +       +  +      VL    G++ +    + 
Sbjct: 1032 KEYHTESTVNFIVELTAKGQAEIAEKGADAFFKLSCQISTTNMVLFDQDGKIKKYSSPEE 1091

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL+E+   R     +R    +  +    + L         I     ++ N  +   V   
Sbjct: 1092 ILEEFYLLRLSYYQKRKEHLVDQLKLMYDKLSNQARFVQMIINRQLVVSNRKRADIVADL 1151

Query: 420  R----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            R                                ++  D +LN+ + +L K +  ++  E 
Sbjct: 1152 RKNDFRPFPKQGKASIAAEPEDDEPIDEEDISADSDFDYLLNMAIYNLTKEKVEKLLKER 1211

Query: 452  DNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            D    ++E++  L+  S +  W+    ++ +  E++ +      RR
Sbjct: 1212 D---VKEEELKVLIGRSPQNLWD---EDLGKFIELWEEVLAEDERR 1251


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/144 (54%), Positives = 110/144 (76%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD+RDG KPVHRR+++AM+E+G D+   +KKSAR+VG+VIGK HPHGD +VY+++
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTI 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           VR+AQ F  RY L+ GQGNFG++DGD+AAA RYTE RM +++  +L  +D++ VD+   Y
Sbjct: 61  VRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNY 120

Query: 159 NEEDSEPVVFPSKFPNLLANGTSG 182
           +  +  P V P+K P LL NG+SG
Sbjct: 121 DGTEMIPAVMPTKVPTLLVNGSSG 144


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 176/427 (41%), Gaps = 30/427 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYSVYKDTEYAPVHQ----DKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKN 317
                    + +TEIPY+  +   + KI + +  K     +D   E     ++      +
Sbjct: 226 ------RTQMNITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRS 376
            S + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILNL 434
             +++  +    +          +     I+      K +      +      VD ++ +
Sbjct: 340 DNKIKETESAFRLAFAKAHFIKKVISG-EIVVQGKTRKELTEELSKIDMYSSYVDKLVGM 398

Query: 435 RLRSLRK 441
            +  +  
Sbjct: 399 NIFHMTS 405


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYA 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYG 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 113/551 (20%), Positives = 202/551 (36%), Gaps = 83/551 (15%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ K VS R  + +  + ++ +   ER+IP L DGFKP  R+++    +        
Sbjct: 700  LYEKDTKRVSYRDFVNKELVLFS-NMDNERSIPSLMDGFKPGQRKVLFTCIKRNDKKEIK 758

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 759  VAQLAGSVAE--HSAYHHGEASLMGTIIGLAQDFVGSNNINLLLPNGQFGTRLQGGKDAA 816

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+++  +I    D+  +  +   + +  EP  +    P +L NGT GI  G 
Sbjct: 817  SPRYIFTLMSKLTRIIFHPHDDPLLKHQ-MDDNQRIEPEYYAPIIPMILVNGTDGIGTGW 875

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T I ++N +E+      ++D  E            P  P       + E I        
Sbjct: 876  MTKILNYNPREVVANVKRMLDGEE----------PIPMDPWFKGYRGTIERIDRHRYAIS 925

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRI-PLLEDIRDE 304
            G   V +   +E          +TE+P +V      E + E  L  +++I PL+ D ++ 
Sbjct: 926  GELAVLSGTEME----------ITELPLRVWTQNYKESVMETLLHGSEKIPPLITDYKEY 975

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     +   +         E +     ++T   L   VL  S G +     ++ ILK
Sbjct: 976  HTDTTVRFIVTMSEEKMQQAEAEGLHKAFKLQTTHSLTSMVLYDSNGCLKMYDTVEDILK 1035

Query: 363  EWLAHRREVLFRRSSFR---MQAIDRRVEILKGLLIAYLN------------IDEIIAII 407
            E+   R     +R  +    +QA  +R+      +    +            + E +   
Sbjct: 1036 EFFTVRLGYYGKRKDYLSGVLQAESQRLSNQARFICEKCDNVLIVENKKAKVLVEELRRR 1095

Query: 408  RNEDKPKPVMVSRFSLTEN---------------------QVDAILNLRLRSLR---KLE 443
              +  P  +         N                       D +L++ +RSL    K E
Sbjct: 1096 NYDPDPVRIWKKNQKNNVNAENEEEEEANAENEEGAVKIGDYDYLLDMPMRSLTYEKKEE 1155

Query: 444  ----EYQIKSELDNLLAE------KEKIDSLLNSGKQQWNQIACEIREVKE-IFSKSTDL 492
                      E D LL +      +E +D  +   K+  +    E+ E K+   +     
Sbjct: 1156 LLKKRDVKMKEYDILLKKSPADLWREDLDHFMVVLKEVEDAEQEELNENKKPSKAAPLAK 1215

Query: 493  GRRRTTFCEVS 503
            GR++    EV+
Sbjct: 1216 GRKKALIAEVA 1226


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 110/148 (74%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++Y +LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 111/157 (70%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +++ + EP V P+ FPNLL NG +GI+ G AT IP 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPP 160


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 176/427 (41%), Gaps = 30/427 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYNVYKDTEYAPVHQ----DKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKN 317
                    + +TEIPY+  +   + KI + +  K     +D   E     ++      +
Sbjct: 226 ------RTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRS 376
            S + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILNL 434
             +++  +    +          +     I+      K +      +      VD ++ +
Sbjct: 340 DNKIKETESAFRLAFAKAHFIKKVISG-EIVVQGKTRKELTEELSKIDMYSSYVDKLVGM 398

Query: 435 RLRSLRK 441
            +  +  
Sbjct: 399 NIFHMTS 405


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 178/456 (39%), Gaps = 47/456 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N   +   +VK +++   + +  + ++L+ +K R+I  + DG KP  R+++++  +  L 
Sbjct: 628  NQLEIPYGDVKQLNITDFVHKDLVNFSLADLK-RSIAHVADGLKPSQRKVMYSCFQKNLK 686

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+ S+ +++V+LA  +       L+   G FG   + G
Sbjct: 687  DEMKVAQLAAYVAE--KSAYHHGEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRLMGG 744

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+  RY   ++T+ A  +    D+  +++ D  +    EP  +    P +L NGT GI
Sbjct: 745  KDASQTRYIFTKLTKEARKLFDPKDDAILNYLD-DDGRSIEPDFYMPTLPMVLVNGTEGI 803

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +  IP  N  +I E     ++                         ES   +   +
Sbjct: 804  GTGFSCYIPPFNPDDIKENIKRSLEG------------------------ESPIDMKPWF 839

Query: 244  RLGRGGFRVR--ARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            R  +G         W  E V R +   + VTE+P         E +  L+  K I     
Sbjct: 840  RGFKGKVFKDDVGLWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLVDKKMITSFT- 898

Query: 301  IRDESAEDVRIVLF-PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              + + EDV   +F    + L  DL +   F  ++M    P          + +    + 
Sbjct: 899  -NNSTTEDVDFEIFGYSGKDLIKDLKLRKTFHTTNMHLFHPTKG-------IYKYTSPEE 950

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEIL--KGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            ILK+++  R E   +R +  +  +++R E+   K   ++ +    ++   R +   +  M
Sbjct: 951  ILKDFVELRLEHYKKRKAHLIDVLEKRAEMCGHKSKFVSMVIEGRLVVFKRKKQDLEKEM 1010

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             S F   +   D +LN +           +  E   
Sbjct: 1011 SSIFPKIDGNWDYLLNTKTVEYTDERVKALMDEAKQ 1046


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/427 (21%), Positives = 175/427 (40%), Gaps = 30/427 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYNVYKDTEYAPVHQ----DKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKN 317
                    + +TEIPY+  +   + KI + +  K     +D   E     ++       
Sbjct: 226 ------RTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYF 279

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRS 376
            S + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILNL 434
             +++  +    +          +     I+      K +      +      VD ++ +
Sbjct: 340 DNKIKETESAFRLAFAKAHFIKKVISG-EIVVQGKTRKELTEELSKIDMYSSYVDKLVGM 398

Query: 435 RLRSLRK 441
            +  +  
Sbjct: 399 NIFHMTS 405


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/162 (57%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
               LA IDN +ISIE L+E+I GPDFPT  I +  R  I E
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-INGRRGIEE 161


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
            kowalevskii]
          Length = 1649

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 203/555 (36%), Gaps = 46/555 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ + +S    + +  + ++ +   ER+IP + DG KP  R+++    +        
Sbjct: 700  LYNKDTRYISYNDFVNKELVLFS-NMDNERSIPSMVDGLKPGQRKVLFTCFKRNDKREVK 758

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 759  VAQLAGSVAE--HSAYHHGEASLMGTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAA 816

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A L++   D+  +  +   + +  EP  +    P +L NG  GI  G 
Sbjct: 817  SPRYIFTMLSPLARLLMPASDDPNLT-QLFDDNQRIEPEWYCPIIPMVLVNGAEGIGTGW 875

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I +++V+EI      +     I  E+ L  +       G I     E I  +     
Sbjct: 876  STKIANYDVREIVANIRLM-----IDGEEPLPMLPSYKGYKGAI-----EEIEANRYACS 925

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +            +  + +TE+P +V      E + E ++    K  PL+ D ++ 
Sbjct: 926  GEIAIV----------DNNTLEITELPVRVWTQVYKETVLEPMLHGSEKVQPLITDYKEY 975

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +    ++   +         + +  +  ++    +  +VL  S G + +   +  ILK
Sbjct: 976  HTDTTVKIVVKMSDEKLLKAEEQGLHKVFKLQNTISVTNSVLFDSHGCIKKYDDIMEILK 1035

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R E    R  +    +    E  K    A   +++I   I  E+K K  ++S   
Sbjct: 1036 EFFELRLERYRIRKEYLEGLL--AAESNKLDNQARFILEKIENKIVIENKSKRDLISMLV 1093

Query: 423  LTENQVDAILNLRLRSLRKLEEY--QIKSELDNLLAEKEKIDSLLNSGK-QQWNQIACEI 479
                  D I   +    R  E+      S   +        + LL         +   E+
Sbjct: 1094 QRGYDSDPIKAWKESQNRNNEDEDSDTDSMYSSATGGGPDFNYLLGMALWSLSKERKDEL 1153

Query: 480  REVKEIFSKSTDLGRRRTT----FCEVSRADKATLQQAMIEKEPITVVIS----NRGWIR 531
             + ++  +   ++ R +T       ++        +    EKE   +  +     +G  +
Sbjct: 1154 LKNRDTKAAELEVLRDKTPSDLWIEDLDAFSAKLEEVEAQEKEDELIGGAIAAKQKGKRK 1213

Query: 532  SLKSHSVDLSALHFK 546
                     S +  +
Sbjct: 1214 KFVQQETRPSPMGRR 1228


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 165/433 (38%), Gaps = 35/433 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ K ++    + +  + ++ S   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYGKSTKYLTFNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVK 741

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 742  VAQLAGSVAEMSA--YHHGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAA 799

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G 
Sbjct: 800  SPRYIFTMLSPLARLLFPALDDNVLKFMY-DDNQKVEPEWYIPIIPMVLVNGAEGIGTGW 858

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +  +P+++ +EI      ++D  E               P+        + +  +  +  
Sbjct: 859  SCKLPNYDTREIVNNIRRMLDGDE----------PQQMLPSYKNFKGVIQELGPNQFILN 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   V     +E          ++E+P +       E++ E ++    K  PL+ D ++ 
Sbjct: 909  GEVSVLDSTTIE----------ISELPARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEY 958

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     L         +     +  +  ++     N  VL      + +   +  IL+
Sbjct: 959  HTDTTVRFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYETVLDILR 1018

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++    
Sbjct: 1019 EFFDLRVKYYSLRKDWLVGML--TAEASKLSNQARFILEKIEGKIVIENKPKKELIQMLV 1076

Query: 423  LTENQVDAILNLR 435
                  D +   +
Sbjct: 1077 QRGYDSDPVKTWK 1089


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 182/426 (42%), Gaps = 28/426 (6%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYNVYKDTEYAPVHQ----DKEHIPPAFYLPVIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL-FPKN 317
                    + +TEIPY+  +   + KI + +  K     +D   E     ++      +
Sbjct: 226 ------RTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRS 376
            S + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNLR 435
             +++  +    +          +     +++ + + +    +S+  +  + VD ++ + 
Sbjct: 340 DNKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIEMYSSYVDKLVGMN 399

Query: 436 LRSLRK 441
           +  +  
Sbjct: 400 IFHMTS 405


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 198/616 (32%), Gaps = 99/616 (16%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 728  QFKPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRK 786

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
            L       +    + E     + HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 787  LKKEIKVAQLVGYISEHAA--YHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 844

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY       +   I    D+  +++    ++   EP  +    P +L NG  
Sbjct: 845  GGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNYLK-DDDVPIEPEWYMPTVPMVLINGAE 903

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP +N  +I      ++   E               P        +  +  
Sbjct: 904  GIGTGWSTNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKGEVRP 950

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----------- 290
                G+G + V               + ++E+P         +++  +I           
Sbjct: 951  ---TGKGKYDVVGVAT----KINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDK 1003

Query: 291  ------------IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         A  +   ++  D       + + PK+     +  +   F L+   + 
Sbjct: 1004 DKDEDGKKDVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVST 1063

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              + +     G++ +    + ILK++   R     +R  ++   +    + L   +    
Sbjct: 1064 TNMILFDFE-GKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIE 1122

Query: 399  NIDEIIAIIRNEDKPKPVMVSR--------------------------------FSLTEN 426
             I +   ++ N  K   V   R                                 S    
Sbjct: 1123 MIIKKELVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVT 1182

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWN----QIACEIRE 481
              D +L + + SL      +I+        +++++ +LL  S    WN    +   E  +
Sbjct: 1183 DFDYLLGMAIYSLT---RERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEK 1239

Query: 482  VKEIFSKSTDLG-------RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               IF +    G       R++ T             +   + + + +  +     +  +
Sbjct: 1240 DCMIFEQKKGEGGAVNGKKRKQRTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1299

Query: 535  SHSVDLSALHFKEGDS 550
                  S+   KE D 
Sbjct: 1300 PKRPVASSSTKKEDDD 1315


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/154 (63%), Positives = 124/154 (80%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
           D RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ 
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 105 FVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SE
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           P V P++ PNLL NG+SGIA GMAT+IP H++ E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 198/616 (32%), Gaps = 99/616 (16%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 743  QFKPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRK 801

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
            L       +    + E     + HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 802  LKKEIKVAQLVGYISEHAA--YHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 859

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY       +   I    D+  +++    ++   EP  +    P +L NG  
Sbjct: 860  GGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNYLK-DDDVPIEPEWYMPTVPMVLINGAE 918

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP +N  +I      ++   E               P        +  +  
Sbjct: 919  GIGTGWSTNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKGEVRP 965

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----------- 290
                G+G + V               + ++E+P         +++  +I           
Sbjct: 966  ---TGKGKYDVVGVAT----KINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDK 1018

Query: 291  ------------IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         A  +   ++  D       + + PK+     +  +   F L+   + 
Sbjct: 1019 DKDEDGKKDVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVST 1078

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              + +     G++ +    + ILK++   R     +R  ++   +    + L   +    
Sbjct: 1079 TNMILFDFE-GKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIE 1137

Query: 399  NIDEIIAIIRNEDKPKPVMVSR--------------------------------FSLTEN 426
             I +   ++ N  K   V   R                                 S    
Sbjct: 1138 MIIKKELVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVT 1197

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWN----QIACEIRE 481
              D +L + + SL      +I+        +++++ +LL  S    WN    +   E  +
Sbjct: 1198 DFDYLLGMAIYSLT---RERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEK 1254

Query: 482  VKEIFSKSTDLG-------RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               IF +    G       R++ T             +   + + + +  +     +  +
Sbjct: 1255 DCMIFEQKKGEGGAVNGKKRKQRTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1314

Query: 535  SHSVDLSALHFKEGDS 550
                  S+   KE D 
Sbjct: 1315 PKRPVASSSTKKEDDD 1330


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/548 (17%), Positives = 200/548 (36%), Gaps = 38/548 (6%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ K ++    + +  + ++ S   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYGKSTKYLTFNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKRNDKREVK 741

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 742  VAQLAGSVAEMSA--YHHGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAA 799

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A L+   +D++ + F    + +  EP  +    P +L NG  GI  G 
Sbjct: 800  SPRYIFTMLSPLARLLFPALDDNVLKFMY-DDNQKVEPEWYIPIIPMVLVNGAEGIGTGW 858

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +  +P+++ +EI      ++D  E               P+        + +  +  +  
Sbjct: 859  SCKLPNYDTREIVNNIRRMLDGDE----------PQQMLPSYKNFKGVIQELGPNQFILN 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   V     +E          ++E+P +       E++ E ++    K  PL+ D ++ 
Sbjct: 909  GEVSVLDSTTIE----------ISELPARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEY 958

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     L         +     +  +  ++     N  VL      + +   +  IL+
Sbjct: 959  HTDTTVRFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYETVLDILR 1018

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++    
Sbjct: 1019 EFFDLRVKYYSLRKDWLVGML--TAEASKLSNQARFILEKIEGKIVIENKPKKELIQMLV 1076

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ-QWNQIACEIRE 481
                  D +   +    ++     I+ E     A     + LL+        +   E+ +
Sbjct: 1077 QRGYDSDPVKTWKQTQEKEEAGELIEEEEAEANATGPDFNYLLSMPLWYLTKEKKEELCK 1136

Query: 482  VKEIFSKSTDLGRRR--TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539
             ++  +      +R+  T   +           ++  KE      S  G +   KS    
Sbjct: 1137 QRDTKNTELQDLKRKSPTDLYKQDLVAFIDELDSLEAKEREEESQSLAGKVVKGKSGRPQ 1196

Query: 540  LSALHFKE 547
            +  +  +E
Sbjct: 1197 VKKMQLQE 1204


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 198/616 (32%), Gaps = 99/616 (16%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++  ++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 743  QFKPGTFLDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRK 801

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
            L       +    + E     + HG+ S+  +++ LAQ +       L+S  G +G   I
Sbjct: 802  LKKEIKVAQLVGYISEHAA--YHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREI 859

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   AA RY       +   I    D+  +++    ++   EP  +    P +L NG  
Sbjct: 860  GGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNYLK-DDDVPIEPEWYMPTVPMVLINGAE 918

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T+IP +N  +I      ++   E               P        +  +  
Sbjct: 919  GIGTGWSTNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKGEVRP 965

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----------- 290
                G+G + V               + ++E+P         +++  +I           
Sbjct: 966  ---TGKGKYDVVGVAT----KINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDK 1018

Query: 291  ------------IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
                         A  +   ++  D       + + PK+     +  +   F L+   + 
Sbjct: 1019 DKDEDGKKDVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVST 1078

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              + +     G++ +    + ILK++   R     +R  ++   +    + L   +    
Sbjct: 1079 TNMILFDFE-GKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIE 1137

Query: 399  NIDEIIAIIRNEDKPKPVMVSR--------------------------------FSLTEN 426
             I +   ++ N  K   V   R                                 S    
Sbjct: 1138 MIIKKELVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVT 1197

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWN----QIACEIRE 481
              D +L + + SL      +I+        +++++ +LL  S    WN    +   E  +
Sbjct: 1198 DFDYLLGMAIYSLT---RERIEKLKQQAHEKEQELLALLEKSPTDLWNTDLDKFLEEWEK 1254

Query: 482  VKEIFSKSTDLG-------RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               IF +    G       R++ T             +   + + + +  +     +  +
Sbjct: 1255 DCMIFEQKKGEGGAVNGKKRKQRTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAE 1314

Query: 535  SHSVDLSALHFKEGDS 550
                  S+   KE D 
Sbjct: 1315 PKRPVASSSTKKEDDD 1330


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 169/420 (40%), Gaps = 33/420 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T+++  +  + +   + +  + ++L+     +IP + DGFKP  R++++   +  L 
Sbjct: 656  EPGTVLDPTLNEIPISDFINKELILFSLADNVS-SIPSVLDGFKPGQRKVLYTCFKKNLT 714

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DG 123
                    A  V +     + HG+Q++  +++ +AQ FV       +   G FG     G
Sbjct: 715  TEKKVANLAPAVSDYTA--YHHGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGG 772

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AAA RY    + ++A  +    D+    +    +E+  EP  +    P +L NG  GI
Sbjct: 773  KDAAAARYIYTELNKIARKVFHPADDPLFRYVQ-EDEKTVEPEWYLPVVPMVLINGAEGI 831

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSIP  N  ++      L+++ E+           P F         R       
Sbjct: 832  GTGWSTSIPPFNPLDVVNNIRHLLNDEEMDDM-------HPWF---------RGWTGTME 875

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
            ++    +R+  R  +E+V  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 876  KIESQRYRMYGR--IEQV--GPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM 931

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
             ++ AE ++ ++   +  +     +        +      NM       ++ +   +  I
Sbjct: 932  EEQHAETIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHVHEI 991

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            LK++   R E   +R  +    +    E L   +     I +   I+ N  KPK  ++S 
Sbjct: 992  LKDFYEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIIDKSLIVTN--KPKKQLISE 1049


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 178/428 (41%), Gaps = 32/428 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
              L+  ++   LAYA+ T++ RAIP++ DGFKPV R +I    ++       F K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
            G V    + HG+ S  D+   +A  +   +PL+ GQGNFG+     AAA RY  AR+++
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
               + +  +   V      ++E   P  +    P +L NG SGIA G AT I  H+V  
Sbjct: 125 NFYNVYKDTEYAPVHQ----DKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   +++  K    +  P+F    + ++ +  I  +Y+              
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTS----------- 225

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
                    + +TEIPY+  +   + KI + +  K     +D   E     + V F K  
Sbjct: 226 ------RTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFK-VKFRKEY 278

Query: 319 SL--DPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRR 375
           SL  + +     I     +  R   N+ V++   ++     +  ++K+++  R+  + +R
Sbjct: 279 SLCDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKR 338

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILN 433
              +++  +    +          +     I+      K +      +      VD ++ 
Sbjct: 339 IDNKIKETESAFRLAFAKAHFIKKVISG-EIVVQGKTRKELTEELSKIDMYSSYVDKLVG 397

Query: 434 LRLRSLRK 441
           + +  +  
Sbjct: 398 MNIFHMTS 405


>gi|289677158|ref|ZP_06498048.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 356

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 49/259 (18%)

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHN 599
           A   K+ D +   L A++   +L+ S+ GK Y L    +   S    G  +  L+ L+  
Sbjct: 1   ATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDG 60

Query: 600 QDIVTAFVYD------------------------------------------STCKLLVV 617
           + I T    D                                              + + 
Sbjct: 61  EYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMS 120

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSID 676
           ++ G                G   L++   + +       G+  + +  +  K+  F   
Sbjct: 121 TANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKES 180

Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDLLGWLGKRG 734
            +  M R  +GVR     +G    +I   I E G   + ++ R Y +          KRG
Sbjct: 181 DVRAMGRTARGVRGMRLPEG--QKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRG 238

Query: 735 GVGSLVPKGFPRSGKFLSS 753
           G G +      R+G+ + +
Sbjct: 239 GQGVIAMVSNERNGRLVGA 257



 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 16/246 (6%)

Query: 465 LNSGKQQWNQIACEIREVKEI----FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           L+ G+     +  ++  +++                    E     KA ++ A  +K P 
Sbjct: 57  LSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPF 116

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + +  G ++        +  S  L AL   EGD L  A        I+L S  GK   
Sbjct: 117 IFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTR 176

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
               ++ +       ++ +  L   Q +++  + +   ++L  S +G       SE    
Sbjct: 177 FKESDVRAMGRTARGVRGM-RLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEY 235

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + S E+    +  V  + G+ + ++ +   L+   + ++  + R  +GV L
Sbjct: 236 KRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTL 295

Query: 690 QSYKDG 695
                 
Sbjct: 296 IKLASD 301


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 117/247 (47%), Gaps = 20/247 (8%)

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
            ++F  + ME  F + M  ++    P+V  L  +LK +L HR+ V+ RR+ F +Q    R
Sbjct: 1   NNLFKSTQMEVTFGVIMLAINNKE-PKVFSLLELLKLFLNHRKTVIIRRTIFELQKARAR 59

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
             IL+GL IA  NID +I +I+        +  ++++F L+E Q +AIL++RL  L  LE
Sbjct: 60  AHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAKFGLSELQSNAILDMRLSKLTGLE 119

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
             ++++EL  +L   EK+D++L S     N I  E+ E+K  F              ++ 
Sbjct: 120 REKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCP--------RITDIV 171

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555
                   + +I  E + V I++RG+I+          K       A+   + D ++   
Sbjct: 172 DDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFF 231

Query: 556 HAHTTDR 562
              + D 
Sbjct: 232 TCMSHDT 238


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/133 (57%), Positives = 105/133 (78%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEE 161
           ++ VDF D Y+  
Sbjct: 121 KETVDFVDNYDGT 133


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 112/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++ M E+GL  G   KKSARIVGEV+GK HPHGD +VYDSLVR+ Q F+
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            RYPLI GQGNFG++DGDS AA RYTE RM  +A  +L+ +D++ VDF   +++   EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P+  PNLL NG SGIAVGMAT+IP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRI++AM E G      ++KSAR VG+ +GK HPHGD ++YD+LVR+AQPF 
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
               L+ GQGNFG++DGD+AAA RYTE RM + A  +L  +D+D VDF+D Y+ +D EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P++FPN+L NG  GIAVGMAT+IP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 112/156 (71%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQ 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/152 (56%), Positives = 116/152 (76%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
            V P+K PNLL NG+SGIAVGMAT+       
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFLRRTTG 159


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/459 (20%), Positives = 177/459 (38%), Gaps = 51/459 (11%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 637  NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSEMKVAQL 695

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V E     + HG+ S+ D++V+LA  F       L+   G FG   + G  A+  RY
Sbjct: 696  AAYVSEKTS--YHHGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRY 753

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A ++    D+  +++ D  + +  EP  +    P +L NGT GI  G ++ I
Sbjct: 754  IFTKLTKNARILFDPKDDPVLNYLD-DDGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYI 812

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N  +I      +I    +   K       P F      V S E              
Sbjct: 813  PPFNPLDIKHNIERIIRGETVVPMK-------PWFDKFTGRVFSNED------------- 852

Query: 252  VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                W  E V + S   ++VTE+P         E +  LI  K+I     + + + +DV 
Sbjct: 853  --GLWITEGVWKYSGKNVLVTELPPGRWTQDYKEYLDTLIEKKKIT--NYVNNSTTDDVN 908

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHR 368
             ++               I     ++  F ++   L      + +    + IL +++  R
Sbjct: 909  FIIEGYTG--------NDIIKDFKLQKTFHVSNMHLFHPTRGIHKYESPEEILTDFVKIR 960

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-----FSL 423
             E   +R +  ++ +    E  K L      ID +I       + K V + R     F  
Sbjct: 961  SETYKKRKAHLIRVLK---EKTKKLENMSKFIDMVIHEKLIVFRRKRVELERQMENIFDK 1017

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
             +   + +LN++           I+ E      E + + 
Sbjct: 1018 IDGSYEYLLNIKTYQYTLEAIQSIREETSKSRIEFDTLQ 1056


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/132 (58%), Positives = 105/132 (79%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNE 160
           ++ VDF D Y+ 
Sbjct: 121 KETVDFVDNYDG 132


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/511 (15%), Positives = 180/511 (35%), Gaps = 72/511 (14%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            V+    +    + ++      R+IP + DGFKP  R++++A  +  L       + A  +
Sbjct: 671  VNHSEFVNRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYI 729

Query: 80   GEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEAR 135
            GE     + HGD S+  +++ +AQ +       L+   G FG   + G   A+ RY   R
Sbjct: 730  GE--HSAYHHGDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTR 787

Query: 136  MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            + ++A  I    D+  +++    +    EP  +    P +L NG+ GI  G +++I +H+
Sbjct: 788  LEKIARAIFHPDDDALLNYL-NDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHD 846

Query: 196  VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             +E+      +I+       +L+     P F      + +     E   +  G       
Sbjct: 847  PREVIANIKKMING---EEPELM----HPHFAGFTGEITAESGSREGSYIVEGKIE---- 895

Query: 256  WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDIRDESAEDVRIVL 313
                    G   +++TE+P           +  L+    K    + D ++   +      
Sbjct: 896  ------RTGDTTLLITELPVGKWTQNYKAFLEGLMSGTDKDPSEISDFKENHTDTTVSFT 949

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--------VPQVMPLDGILKEWL 365
                 +   + + +  +    +  +F L+  + +           + +      IL+ + 
Sbjct: 950  V----TATEENINKFEYGKGGLLKKFKLSTTMSTANMHLFSEDGKIVKYNGSVDILRTFF 1005

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412
             HR E   +R    ++ + R +++          + +   ++ N  +             
Sbjct: 1006 HHRLEYYVKRKDMLLEKLRRELKVYDNKARFVEEVYKGDLVVSNRKRSELLFELRDKEYD 1065

Query: 413  --PKPVMVSRFSLTENQ----------------VDAILNLRLRSLRKLEEYQIKSELDNL 454
              PK    +     +                   + +L +++ SL      +++ +    
Sbjct: 1066 IYPKESNQAETDDEDESMESVEENASDAELAKGYEYLLGMKIWSLTFERAKELRRQKTEK 1125

Query: 455  LAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
              + EK++    S +  W      I E  + 
Sbjct: 1126 AEDVEKLEG--TSPEAIWQTDLDAIEEALDE 1154


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/138 (56%), Positives = 108/138 (78%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+V
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 140 AELILQGVDEDAVDFRDT 157
           A  ++  ++++ VDF D 
Sbjct: 121 AHELMADLEKETVDFVDN 138


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 113/156 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD   Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 89/156 (57%), Positives = 115/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHGD+S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 114/156 (73%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HPHG+ S Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYE 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  +++  VDF  
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            Y+    EP+  P++ P +L NG SGIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 98/150 (65%), Positives = 122/150 (81%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
            RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LV
Sbjct: 1   GRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALV 60

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQ F  RYP I GQGNFG+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y+
Sbjct: 61  RMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYD 120

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           +  SEP V P++ PNLL NG+SGIAVGMAT
Sbjct: 121 DSMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 81/491 (16%), Positives = 191/491 (38%), Gaps = 65/491 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFSYDDC-ERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + + +V E     + HG+ S+  ++V +AQ F        +   G FG+    G
Sbjct: 701  KELKVSQLSGLVSE--KSSYHHGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGG 758

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R++ ++  +    D+  +++    +    EP  +    P +L NG  GI
Sbjct: 759  KDQAAARYIYTRLSSISRYLCPKDDDQILEYLIDED-RRIEPKYYFPIIPTVLVNGADGI 817

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T++ ++N  ++ +     ++          E          G   + R++   S 
Sbjct: 818  GTGWSTAVSNYNPLDLVDNCRRYLNG---------EEFKEMKPWFRGWTGQLRKNKDGSG 868

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G +R  +   +E          +TE+P Q+      + + + I A    +++   +
Sbjct: 869  YDCYGKWRRLSEDKIE----------ITELPIQIWTDSYKQHLEKCIEA---KIVKGYSE 915

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDGILK 362
                +    +    + +  + +  ++ ++S ++T    NM++ +    + +   +  IL 
Sbjct: 916  YHMVNTVHFVIDLVQPMSDEDIWTNLKLVSSVKTT---NMHLFNSEYKITKYHTVLDILS 972

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----------- 411
            E+   R +    R    +++++R++ IL         + E   I+ N             
Sbjct: 973  EFCDVRMKGYEERKKAIIESMERQLMILSNKARFIKMVIEGELIVNNRKKNELYKDLIKF 1032

Query: 412  ------KPKPVMVSRFSLTENQ--------------VDAILNLRLRSLRKLEEYQIKSEL 451
                   PK    S+                      D +L++++ +L   +  ++  + 
Sbjct: 1033 GFDQIRDPKKANKSKPIGESEDDEIKEEEEDDEVGGYDYLLSMKIWTLTYEKAKKLMEDC 1092

Query: 452  DNLLAEKEKID 462
            D+L  + + I 
Sbjct: 1093 DDLKTQIDTIK 1103


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 108/141 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           +A+S I  RA+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD 
Sbjct: 7   FAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDT 66

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V
Sbjct: 67  AVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETV 126

Query: 153 DFRDTYNEEDSEPVVFPSKFP 173
           +F   Y+  + EP+V P  FP
Sbjct: 127 NFGPNYDGSEHEPLVLPDPFP 147


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/138 (56%), Positives = 108/138 (78%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+
Sbjct: 1   PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 60

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 61  VGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 120

Query: 139 VAELILQGVDEDAVDFRD 156
           +A  ++  ++++ VDF D
Sbjct: 121 IAHELMADLEKETVDFVD 138


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 101/489 (20%), Positives = 196/489 (40%), Gaps = 43/489 (8%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            +++++ L   + E Y  Y + T+ +RAIP L+DG KP  RRI+  + +          K
Sbjct: 7   HSMESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWKNQ---SKGLMK 63

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYT 132
            +   G V+  LHPHG  SV  ++V +AQ +     YPLI  +G FG     S AA RY 
Sbjct: 64  VSSATGLVLT-LHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPAASRYI 122

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E ++ ++++++L   D D V+    Y+E+  EPV    K P +L NG  GI  G ++ IP
Sbjct: 123 ECKLGKISQILLFD-DMDQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGFSSVIP 181

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           S + +E+  + ++ +++ +    K        +     I  + R              R+
Sbjct: 182 SFSHKEVINSMISFLESGKAKKLK-----PFSNGFNLPIERDQRG-------------RL 223

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
                 EEV      I + E+P      ++ + + + I A     ++D  D + ++   +
Sbjct: 224 IFNMGFEEVDGK---IYINELPRGYDAQKIYKYLTKYIEA---DFIKDFVDSTVDNDVRI 277

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                R    +  +E +       +    N  ++S   V      + I++ +   R  V+
Sbjct: 278 ELIFKRG--AEKSLEEVEKEMGTASTQVPNYTLISERGVRIFDKPEEIIEIFSGQRLAVV 335

Query: 373 FRRSSFR----MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            RR   R       I +  EI+K +        +   +       K  +           
Sbjct: 336 KRRYELRCQGLKDKIQQNNEIIKFIKK------KEYEVATKSKNRKSFVEYLTKKKFVYS 389

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           D + ++ +  + K E  +    + +      +   +  S K    ++  E+++V +  + 
Sbjct: 390 DYLADMPIYRMTKEEVAKRALMVKDDTKLLAEYTKIAKSDKLIKKKLIEELKDVGDQLTA 449

Query: 489 STDLGRRRT 497
                 +  
Sbjct: 450 WLKGKDKER 458


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 190/488 (38%), Gaps = 65/488 (13%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + NT ++++V ++S    + +  + ++     ER+IP + DG KP  R+++    E  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFSYDDC-ERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + + +V E     + HG+ S+  ++V +AQ F        +   G FG+    G
Sbjct: 701  KELKVSQLSGLVSE--KSSYHHGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGG 758

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               AA RY   R++ ++  +    D+  +++    +    EP  +    P +L NG  GI
Sbjct: 759  KDQAAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGI 817

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T++ ++N  ++ +     ++          E          G   + R++   S 
Sbjct: 818  GTGWSTAVSNYNPLDLVDNCRRYLNG---------EEFKEMKPWFRGWTGQLRKNKDGSG 868

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G +R  A   +E          +TE+P Q+      + + + I A    +++   +
Sbjct: 869  YDCYGKWRRLADDKIE----------ITELPIQIWTDTYKQHLEKCIEA---KIVKGYSE 915

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDGILK 362
                +    +    + +  + +  ++ ++S ++T    NM++ +    + +   +  IL 
Sbjct: 916  YHMVNTVHFVIDLVQPMSDEDIWTNLKLVSSVKTT---NMHLFNSEYKITKYHTVLDILA 972

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----------- 411
            E+   R +    R    +++++R++ IL   +     + E   II N             
Sbjct: 973  EFCDVRMKGYEERKKAIIESMERQLMILSNKVRFIKMVIEGDLIINNRKKNELYKDLIKL 1032

Query: 412  ------KPKPVMVSRFSLTENQ--------------VDAILNLRLRSLRKLEEYQIKSEL 451
                   PK    S+                      D +L +++ +L   +  ++  + 
Sbjct: 1033 GFDQIRDPKKANKSKPIGESEDAEIKEEDDDDEVGGYDYLLGMKIWTLTYEKAKKLMEDC 1092

Query: 452  DNLLAEKE 459
            D+L  + +
Sbjct: 1093 DDLKTQID 1100


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 178/442 (40%), Gaps = 36/442 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 797

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+QS+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 798  VAQLAGAVGEMSA--YHHGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 855

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V + +   VD++ + F    N+   EP  +    P +L NG  GI    
Sbjct: 856  SPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 914

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P++N +EI +    LI   +            P  P       + E + +      
Sbjct: 915  STKVPNYNPREIVDNIRRLIRGED----------PKPMVPWFKNFRGTIEQLDDQRFACS 964

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDE 304
            G   +               + +TE+P +V      E + E ++         ++D ++ 
Sbjct: 965  GEIAIL----------RDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPALIQDFKEY 1014

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   +     D  ME +  +  ++T    +  VL      + +   ++ I K
Sbjct: 1015 HTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFRNVEEICK 1074

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R++    R +F+   +  + E L     A   + +I   I  E+K K  +V +  
Sbjct: 1075 EFFETRKKKYIERKAFQEGMLRAQSERLSN--QARFILAKIKGEILIENKRKVAIVEQLV 1132

Query: 423  LTENQVDAILNLR-LRSLRKLE 443
                  D +   + L+  ++LE
Sbjct: 1133 KKGFDPDPVKKWKELQRRKELE 1154


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 89/546 (16%), Positives = 190/546 (34%), Gaps = 82/546 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++  +  + +   + +  + ++L+    R+IP + DGFKP  R+++++  +  L 
Sbjct: 655  EPGNTLDPTLSEIPICDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYSCFKRKLK 713

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +    V E     + HG+QS+  ++V +AQ +       L+   G FG     G
Sbjct: 714  SEIKVAQLIGYVSEHTS--YHHGEQSLAQTIVGMAQDYVGSNNIYLLKPNGAFGTRAAGG 771

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +AA RY    +  +   I   +D   + +    ++       +    P +L NG  GI
Sbjct: 772  KDSAAPRYIFTELNNITPNIFNPLDNPLLTYLQEDDQTIEPQ-WYLPVIPMILVNGAEGI 830

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  EI +    L++   +                        E  ++  
Sbjct: 831  GTGWSTNIPCFNPLEIVQNIKKLMNGEPMD--------------DMAPFYRGWEGRLQ-- 874

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLEDI 301
            ++    +R+  R  +E+V  G   + +TE+P +   S + E +   +    K  P ++D+
Sbjct: 875  KIDGQRYRMYGR--IEQV--GPRTLEITELPAKTWISTIKEHLLLGLAGNEKTKPWIKDM 930

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGI 360
            ++     ++  +   +  +     +        + T    NM      GR+ +   +  I
Sbjct: 931  QENHGATIKFTVELTDEEMQNTRRIGFYERFKLVSTISLANMVAFDPNGRIKKYEDVRDI 990

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK-------- 412
            L ++   R E   +R     + +  +VE L         I E    + N+ +        
Sbjct: 991  LSDFYYVRLEYFQKRKDHMSERLQWQVEKLSQQTRFIKLIVEKKLTVTNKPRSALFRELE 1050

Query: 413  ----PKPVMVSRFSL----TENQ------------------------------VDAILNL 434
                PK     R        E Q                               + +L +
Sbjct: 1051 ELGFPKINSEGRPYYGAVKGEEQSVLDAAYSDDNEDPEEESNEVNGPQDKYGTFEYLLGM 1110

Query: 435  RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            ++ SL K +  ++ ++      E + +  L  S K  W     ++      +    +   
Sbjct: 1111 KIWSLTKEKYEKLLNQKQEKEVELDNLLRL--SAKDLW---CQDLDAFSNAYKAFLEYDE 1165

Query: 495  RRTTFC 500
            ++    
Sbjct: 1166 KKRNSI 1171


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 151/412 (36%), Gaps = 35/412 (8%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T +  +V  + +   + +  + ++++    R+IP + DG KP  R+II    +  L  
Sbjct: 734  PGTFLNHDVDEIPISDFINKELILFSMADNI-RSIPSVADGLKPGQRKIIWGCFKRKLKK 792

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                 +    V E     + HG+QS+  ++V LAQ +       L+   G +G  D  G 
Sbjct: 793  EIKVAQLVGYVSEHAA--YHHGEQSLTMTIVNLAQDYVGSNNINLLMPNGQYGTRDQGGK 850

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              AA RY    ++ +   +    DE  +  +   + +  EP  +    P +L NG  GI 
Sbjct: 851  DHAAARYIFTELSPLTRSLFNTADEPLLK-QQKEDNQPVEPEYYMPIIPMVLVNGADGIG 909

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIPS+N  +I      L+D      E+ +          G I    +        
Sbjct: 910  TGWSTSIPSYNPTDIVANIRRLMDG-----EEQVPMFPWWRGFNGEIKSTGKN------- 957

Query: 245  LGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLED 300
                      ++ V  + R      + +TE+P          ++  ++++++   P   +
Sbjct: 958  ----------KYDVTGIARKLNDTQVEITELPIHKWTQNFKAELETMMVSEKGEAPTYTE 1007

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
              D +     I +         +      F L+   +   +       G++ +    + I
Sbjct: 1008 HHDNTNVHFIITMSATELKKAEEQGFVEYFKLTSKISTANMIAFNF-DGKITKYDSPEEI 1066

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            ++E+   R     +R  +    +  ++  L         I +   I+ N  K
Sbjct: 1067 VEEFYPQRLMYYQKRKDYLADELQVQLSRLNNQARFIQMIVDRQLIVSNRKK 1118


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 180/457 (39%), Gaps = 47/457 (10%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            NV+ + +   + +  + ++L+ +K R+I  + DG KP  R++++A     L       + 
Sbjct: 637  NVERLGISDFIHKDLVNFSLADLK-RSIAHVSDGLKPSQRKVLYACFTKNLTSEMKVAQL 695

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRY 131
            A  V E     + HG+ S+ D++V+LA  F       L+   G FG   + G  A+  RY
Sbjct: 696  AAYVSEKTS--YHHGEVSLADTIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRY 753

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               ++T+ A ++    D+  +++ D  + +  EP  +    P +L NGT GI  G ++ I
Sbjct: 754  IFTKLTKSARILFDPKDDPVLNYLD-DDGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYI 812

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P  N  +I      +I+   +   K       P F      V S E              
Sbjct: 813  PPFNPSDIKHNIERIINGENVIPMK-------PWFDKFTGRVFSNED------------- 852

Query: 252  VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
                W  E V + S   ++VTE+P         E +  LI  K+I     + + + +DV 
Sbjct: 853  --GLWITEGVWKSSGKSVIVTELPPGRWTQDYKEYLDTLIEKKKIT--NYVNNSTTDDVN 908

Query: 311  IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHR 368
              +               I     ++  F ++   L      + +    + IL +++  R
Sbjct: 909  FSIEGYTG--------NDIIKDFKLQKTFHVSNMHLFHPTKGIHKYESPEEILTDFVKIR 960

Query: 369  REVLFRRSSFR---MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             E   +R +     ++   +++E +   +   ++ +++I   R   + +  M   F   +
Sbjct: 961  SETYKKRKTHLICVLKEKTKKLENMSKFIDMVIH-EKLIVFRRKRVELEREMEKIFDKID 1019

Query: 426  NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
               + +LN++           I+ E      E + + 
Sbjct: 1020 GSYEYLLNIKTYQYTDEAIQSIREETSKSRIELDTLQ 1056


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/133 (56%), Positives = 104/133 (78%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNEE 161
           ++ VDF D ++  
Sbjct: 121 KETVDFVDNHDGT 133


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 172/447 (38%), Gaps = 61/447 (13%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            N + VS    + +  + ++++   ER+IP + DG KP  R+I+ +  +  L       + 
Sbjct: 700  NARDVSYSEFVHKELILFSVADC-ERSIPSVVDGLKPGQRKIMFSAFKRNLVRSLKVARF 758

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
            A  V E     + HG+QS+  ++V LAQ +      PL+   G FG     G   AA RY
Sbjct: 759  AGYVSEHAA--YHHGEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRY 816

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               R+T +A  I    D+  V++RD  +    EP  +    P +L NGT+GI  G AT+I
Sbjct: 817  ISTRLTDIARRIYHPSDDFIVEYRD-DDGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNI 875

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P+++  ++ +    L     +S E+L          TG I               +G F 
Sbjct: 876  PNYSPLDVIDNLNRL-----LSGEELQPMKPWYFGFTGTIE-----------EREKGKFV 919

Query: 252  VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
                  V    R    + +TE+P      +  + + +L   + +    +   +   D  +
Sbjct: 920  SSGCATV----RPDGVVHITELPIGTWTQQYKKFLEDLREREIVIQYREHNTDVTVDFEV 975

Query: 312  VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQVMPLDGILKE 363
             + P         ++        +E R  L   + +          ++ + +  + +LKE
Sbjct: 976  FIHP--------EVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDAESVLKE 1027

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFS 422
            +   R E   RR  F ++ + R    L+ ++      ID    + R   K          
Sbjct: 1028 FYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIVTRRSMK---------- 1077

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKS 449
                  D + +L+ R        Q K 
Sbjct: 1078 ------DVLKDLKQRGYTPFPPQQKKK 1098


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 178/442 (40%), Gaps = 36/442 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++ +++S +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 739  LYDKDTRSISFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 797

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+QS+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 798  VAQLAGAVGEMSA--YHHGEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 855

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V + +   VD++ + F    N+   EP  +    P +L NG  GI    
Sbjct: 856  SPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 914

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P++N +EI +    LI   +            P  P       + E + +      
Sbjct: 915  STKVPNYNPREIVDNIRRLIRGED----------PKPMVPWFKNFRGTIEQLDDQRFACS 964

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDE 304
            G   +               + +TE+P +V      E + E ++         ++D ++ 
Sbjct: 965  GEIAIL----------RDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPALIQDFKEY 1014

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   +     D  ME +  +  ++T    +  VL      + +   ++ I K
Sbjct: 1015 HTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFRNVEEICK 1074

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R++    R +F+   +  + E L     A   + +I   I  E+K K  +V +  
Sbjct: 1075 EFFETRKKKYIERKAFQEGMLRAQSERLSN--QARFILAKIKGEILIENKRKVAIVEQLV 1132

Query: 423  LTENQVDAILNLR-LRSLRKLE 443
                  D +   + L+  ++LE
Sbjct: 1133 KKGFDPDPVKKWKELQRRKELE 1154


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 173/436 (39%), Gaps = 35/436 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K ++    + +  + ++ +   ER+IP L DG KP  R++++   +        
Sbjct: 691  LYGKETKNITYEDFVNKELILFS-NMDNERSIPSLVDGLKPGQRKVLYTCFKRNDKREIK 749

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 750  VAQLAGSVAE--HSAYHHGEMSLMSTIIGLAQDFVGSNNINLLLPIGQFGTRLQGGKDAA 807

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +A LI+  +D+  ++     + +  EP  +    P +L NG  GI  G 
Sbjct: 808  SPRYIFTMLSPLARLIVPALDDPVLNHLY-DDNQKIEPEFYMPILPMVLVNGAEGIGTGW 866

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P+++ +E+      +I   E            P  P       + + + E   +  
Sbjct: 867  STKVPNYDPREVVANLRRMIAGDE----------PKPMKPWFKNFKGTVDQVEEQRFVVS 916

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   + +   +E          +TE+P +       E + E ++    K  P++ D ++ 
Sbjct: 917  GEVALLSSNSIE----------ITELPVRTWTQNYKENVLETMLHGTEKVPPMITDYKEY 966

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     +   +         E +  +  ++T    +  VL  S G +        I++
Sbjct: 967  HTDTTVRFVVTMSEDKLSKAQDEGLHKVFKLQTTLCTSSMVLFNSKGVLTTFRNSTEIMQ 1026

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++   R E   +R ++ +  +    + L+    A   +++I  +I+ E++ +  M+    
Sbjct: 1027 DFYETRLEGYKKRKAYMLGLLTAEAKRLEN--QARFILEKIDNVIKIENRKRKEMILTLR 1084

Query: 423  LTENQVDAILNLRLRS 438
                  D +L  + + 
Sbjct: 1085 ERGYDPDPLLEWKKQQ 1100


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/492 (18%), Positives = 193/492 (39%), Gaps = 37/492 (7%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
             V+  VK ++    +++  + +  +    RAIP + DG KP  R++++A  + GL     
Sbjct: 1001 FVDYTVKNLTYSDFVDKELVQFCRAA-NARAIPSVVDGLKPGQRKVLYASFKRGLTQEMK 1059

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG++S++ ++V +AQ F      PL+   G FG     G  AA
Sbjct: 1060 VAQLAGYVAEHTA--YHHGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKDAA 1117

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  +   I   +D+  +++ +  + +  +P  F    P +L NG+ G+ +G 
Sbjct: 1118 SARYIFTKLAPLTRTIFPDLDDPVLNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGW 1176

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             TSIP +N   + +  L L+ N     E +           G + +              
Sbjct: 1177 RTSIPMYNPTNLIDNLLRLLHN-----EPMEPLTPWYKGFKGSVELTP------------ 1219

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLEDIRDESA 306
              F  +    +E   +      ++E+P +   +   E +   +  ++  P L+D  + + 
Sbjct: 1220 -PFTFKTYGVIEPTKK-EHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNT 1277

Query: 307  EDVRIVLFPKNRSLDPDLLMES---IFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILK 362
            +          R  +   + ++   +  L  +E+ F + M +      + + M    I++
Sbjct: 1278 DQKVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIR 1337

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++   R E   +R + R + ++   + L   L     +      +    K +       S
Sbjct: 1338 DFFEVRMEYYAKRKAAREKVLENEAKRLGDKLKFVKLVISGSLKLFGRSKAELRQDLVKS 1397

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
               N  + +L++ L  L K +  Q+        AE  +      S    W     E+R +
Sbjct: 1398 GLGNGYENLLSIALDDLTKEKTEQLAHAKQRKDAELAETRR--TSAAAMWE---HELRAL 1452

Query: 483  KEIFSKSTDLGR 494
            ++   K+ +   
Sbjct: 1453 RDKLDKAHEKKD 1464


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/149 (57%), Positives = 117/149 (78%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICE 201
           PNLL NG+SGIAVGMAT+IP H++ E+  
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEVIN 149


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 101/147 (68%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD+RDG KP  RRI++AM ++ L  GA  +K A+I G+ 
Sbjct: 1   EEEMKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDT 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+  +Y +LVR+AQ +V RY LI GQGNFG+IDGD  AA RY+EAR+T  +  
Sbjct: 61  SGDYHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQ 120

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           +++ +D++ VD    Y+E   EPVVFP
Sbjct: 121 LMKDLDKETVDHVPNYDETKKEPVVFP 147


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 109/153 (71%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD++VR
Sbjct: 7   RALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 66

Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           ++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++
Sbjct: 67  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDD 126

Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            + EP V P+ FPNLL NG +GI+ G AT+IP 
Sbjct: 127 TEKEPTVLPAAFPNLLVNGATGISAGYATAIPP 159


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1645

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/594 (14%), Positives = 205/594 (34%), Gaps = 90/594 (15%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
            +++  R  +++  + ++      R+IP++ DG KP  R++++++ +  L+      + A 
Sbjct: 804  RSLRYRDFIDKELVLFSRYD-TARSIPNVIDGLKPGQRKVLYSVFKKKLNNEMKVAQLAG 862

Query: 78   IVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTE 133
             V E     + HG+ S+  ++V +AQ F       L+   G FG+    G  A+A RY  
Sbjct: 863  YVAE--HSAYHHGEASLQSTIVNMAQDFVGSNNLNLLQPCGQFGSRKEGGKDASAARYIF 920

Query: 134  ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
             +++     I    D+  + +    + +  EP+ +    P +L NG  GI  G + S+P+
Sbjct: 921  TKLSTWTRYIFPEADDPLLIYLQ-DDGQQIEPLFYVPIIPMVLVNGADGIGTGWSCSVPN 979

Query: 194  HNVQEICE----AALALIDNPEISIEKLLEYIIGP-----------------DFPTGGII 232
            +N ++I      A    I  P     +  +  + P                       I 
Sbjct: 980  YNPKDIINNLKRALRGDIMMPMTPWYRSFKGKVTPIKQKNRKNLSKRKNLTVKLQDNNID 1039

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVG-------------------RGSWCIVVTEI 273
            +      V     G     +     +  +                    +    +++TE+
Sbjct: 1040 ISHNNGTVSHTITGCSQSELDEDHVILTIDPDDNLELGANYETFGNWYRKDDETLIITEL 1099

Query: 274  PYQVQKSRLIEKIAELI---------IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            P +       E +   +                + D RD S+ D   +            
Sbjct: 1100 PVRRWTQDYKEWLESTLLPPLNTPEGDDIDHSWIMDYRDNSSHDSVHITIRIKPDKFIQA 1159

Query: 325  LMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
              E I  +  +++    +   L  +   + +      ILKE++  R ++  +R  + +  
Sbjct: 1160 ENEGIEKVFKLKSTLSTSNMTLFDNNSHIVRYETELDILKEFIPTRLQMYEKRKRYLLSK 1219

Query: 383  IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
            ++    IL+  ++    + E    I N    K   +    L +N + ++ +++L  L + 
Sbjct: 1220 LNYERVILEQKILFLNLVIEDRMKISN----KSRSILVQELKKNNLKSLKDIQL--LTEW 1273

Query: 443  EEYQIKSELDNL-----------------LAEKEKIDSLLNSG-----KQQWNQIACEIR 480
              ++    +D L                   E ++ D LL+        ++   +  E+ 
Sbjct: 1274 NNFKNVVTVDQLESNNLDVDCNNEQIPCVDDEIKEFDYLLSLPLWSLTTERMELLKDELN 1333

Query: 481  EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            +    ++             E+         +    +    + + ++  I+  +
Sbjct: 1334 KKIAEYNNLKKTSIEDLWNKELDELLSVIECEETKRE---VIEMEHKKLIQKRR 1384


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/604 (18%), Positives = 214/604 (35%), Gaps = 87/604 (14%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
             D       L   + + +S    + +  + ++ +   ER++P L DG KP  R++++   
Sbjct: 668  DDRPEPGTDLYSADTRTLSYSDFINKELVMFSCAD-LERSVPSLCDGLKPGQRKVLYTCL 726

Query: 63   EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
                       + A  V E+    + HG+QS+  +++ +AQ +       L+   G FG 
Sbjct: 727  RRNDKREVKVAQLAGSVAELSA--YHHGEQSLLGTIINMAQNYVGSNNLNLLQPIGQFGT 784

Query: 121  --IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
                G  AA+ RY    ++ +  L+   VDE+ + ++   + +  EP  +    P +L N
Sbjct: 785  RLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLLTWQY-DDNQKVEPSWYCPIIPTVLVN 843

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            GT GI  G +T +P+H+++E+ +    LI+  E            P  P+      + E 
Sbjct: 844  GTEGIGTGWSTRVPNHDIREVVKNIKRLINGEE----------PVPMLPSYKNFRGTIEE 893

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
            +  +  +  G          E        + +TE+P +       E + E ++A      
Sbjct: 894  VEANRYVVSG----------EAALIDDQTVEITELPIKSWTQAYKESVLEPLVAGTDKAP 943

Query: 299  EDIRDESAEDVRIVL-FPKNRSLDPDLLMES--IFMLSDMETRFPLNMNVL---SMGRVP 352
            + I +    +  I + F      D    ME   +     ++     N  ++     GR+ 
Sbjct: 944  QQILEYKEYNTDITVRFLVKMGADKLKTMERSGLHKFLSLQNSLSCNNTLVLFDEFGRLR 1003

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +      IL E+   R ++  +R  F    +    E  K    A   +++I   I   +K
Sbjct: 1004 KFNTTVEILLEFYKIRSKLYEKRKDFLTGLL--TAEAAKLTNQARFIVEKIEGKISIFNK 1061

Query: 413  PKPVMVSRFSLTENQVD----------------------------------AILNLRLRS 438
            PK V++          D                                   IL++ L S
Sbjct: 1062 PKKVLIKMLVDNNYDSDPVKAWKNSIAKKVEERASDEEEEEVEDNKGPDFNYILSMPLWS 1121

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            L K  + ++  + D    E E++     +  + W     ++ +  E   K          
Sbjct: 1122 LSKERKDELLKQRDAKCGELEELKK--KTPTRLW---LDDLDKFMEELDK---------- 1166

Query: 499  FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
              E    + A +      K+     +  RG  + ++      S    +    +  AL A 
Sbjct: 1167 -VEQKEREDAMMSTEDAPKKKTMFGVKGRGKGKMVEKKETKPSEDAIRVEPVIDAALKAR 1225

Query: 559  -TTD 561
             TT 
Sbjct: 1226 LTTQ 1229


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/149 (57%), Positives = 118/149 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICE 201
           PNLL NG+SGIAVGMAT+IP HN+ E+ +
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVIQ 149


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/136 (56%), Positives = 106/136 (77%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 142 LILQGVDEDAVDFRDT 157
            ++  ++++ VDF D 
Sbjct: 121 ELMADLEKETVDFVDN 136


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           ++ + T G++Y +    L S RG GE +   + L     +    +     KLL+ S  G 
Sbjct: 1   MVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGY 60

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPE 680
            F+   ++++A  R GKT + +     +   + +  +H  +  + +  ++L+F +D +P+
Sbjct: 61  GFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQ 120

Query: 681 MSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
           +S+GKG ++ +         D G++ +        LT I    R       +L   +G+R
Sbjct: 121 LSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQKVVGER 179

Query: 734 GGVGSLVPKGFPRSGKF 750
           G  G+ + +G  R  + 
Sbjct: 180 GRRGT-LMRGLQRIDRI 195


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 111/154 (72%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++V
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 67  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           + + EP V P+ FPNLL NG++GI+ G AT IP 
Sbjct: 127 DTEKEPTVLPAAFPNLLVNGSTGISAGYATEIPP 160


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 162/434 (37%), Gaps = 35/434 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E+N + V+ +  + +  + ++ +   ER+I  + DG KP  R+++    +        
Sbjct: 675  LYEKNTRTVTYKDFVNKELVLFS-NMDNERSIASVVDGLKPGSRKVLFTCIKRNDKREIK 733

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  ++V LAQ +       L+   G FG     G  AA
Sbjct: 734  VAQLAGSVAE--HSAYHHGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQGGKDAA 791

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +  LI    D+  + +    + +  EPV +    P +L NG  GI  G 
Sbjct: 792  SPRYIFTMLSPLTRLIFHPHDDPLLTYLR-DDNQKIEPVWYMPIIPMVLVNGAEGIGTGW 850

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP+HN +E+      ++       E  L         TG I   S +  + S  LG 
Sbjct: 851  MTKIPNHNPREVISNIKRMLRG-----EDPLPMKPWYKNFTGHIEKLSEQKFISSGELGV 905

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIP-LLEDIRDE 304
                            G   + +TE+P  V      E + E  L   ++ P ++ D ++ 
Sbjct: 906  I---------------GHNRVEITELPVGVWTQNYKESVLEPMLTDTEKSPAVITDYKEY 950

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILK 362
            + +     +   N         E I     +     L           + +      IL+
Sbjct: 951  NTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAFDKDCVLKKYEATQQILR 1010

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+ A R +   +R ++    +    E  K    A   +++    +R E++ K  MV    
Sbjct: 1011 EFYAVRLDFYGKRKAYLEGML--GAEAAKLTNQARFIVEKCDGDLRIENRKKSEMVKELV 1068

Query: 423  LTENQVDAILNLRL 436
                  D +   +L
Sbjct: 1069 RRGYNSDPVKAWKL 1082


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 181/465 (38%), Gaps = 40/465 (8%)

Query: 11  TLVEENVKAVSLRF---ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             V++++  ++LR     ++     +A+ T++ RAIP+L DGFKPV R +I    ++   
Sbjct: 10  KQVDDSIGQLNLRDLQSIIDNEAKEFAIYTVENRAIPNLIDGFKPVQRFVIARALDLSRG 69

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F K A + G V    + HG+ S  D+   +A  +   YPL+ GQGNFG+     AA
Sbjct: 70  NKEKFHKLASVAGGVADLGYHHGEGSAQDAGALMANTWNNNYPLLDGQGNFGSRLVQKAA 129

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RY   R++     + +  +          ++E   P  +    P +L NG  GIA G 
Sbjct: 130 ASRYIFCRISDNFRKVYKDTEIAPEHK----DKEHVPPAFYLPIIPTVLLNGVQGIATGY 185

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT I  H+ + + E     +        +    +  P F         R  +V   RL  
Sbjct: 186 ATKILPHSFESVVECTKLALQGKLDKEPE----VQIPQF---------RGEVV---RLED 229

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G    R  +           + ++EIP +  +   +EK+ E ++ K    +  + D S  
Sbjct: 230 GSIECRGLYKFTSAS----QMYISEIPAKFDRETYVEKVLEPMVDK--NFISYVDDCSKT 283

Query: 308 DVRIVLFPKNRSL----DPDLLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGIL 361
                +  K   +    D     E I     +  +    + V+        +      ++
Sbjct: 284 GFGFKVKFKKDYMLGECDEKYRHEKIMRDFKLVEKMSQFIVVIDENGKLNDKFQSSSELI 343

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           K ++  R+  + +R   +++  D   ++   L  A    + I   I  + K +  + S  
Sbjct: 344 KHFVEVRKTYIVKRIEHKIKECDEAFKL--ALAKAMFIKEVIEGSIVIQGKTRKQLTSEL 401

Query: 422 SLTENQ---VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                     D ++++ +  +   E  ++  +  +L AE +    
Sbjct: 402 ESRPTYAPFADKLVSMNIYHITSDEAKKLAQQAKDLKAELKYWQE 446


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/134 (55%), Positives = 103/134 (76%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSA   RYTE RM+++A  ++  +
Sbjct: 61  PHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADL 120

Query: 148 DEDAVDFRDTYNEE 161
           +++  DF D YN  
Sbjct: 121 EKETDDFVDNYNGT 134


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 109/157 (69%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V    
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPLAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            +++ + EP V P+ FPNLL NG +GI+ G AT  P 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFPP 160


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/142 (59%), Positives = 112/142 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P+K PNLL NG+SGIAVGMAT+
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
            magnipapillata]
          Length = 1323

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 88/497 (17%), Positives = 178/497 (35%), Gaps = 70/497 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E+  + V+ +  + +  + ++ +   ER+IP L DGFKP  R+++    +        
Sbjct: 675  LYEKGTRTVTYQDFINKELILFSNTD-NERSIPSLVDGFKPGQRKVLFTCMKRNDKREVK 733

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAA 127
              + A  V E+    + HG+ S+  ++V LAQ F       ++   G FG  ++ G  +A
Sbjct: 734  VAQLAGSVAELSA--YHHGEMSLMGTIVNLAQNFVGSNNLNVLLPIGQFGTRHVGGKDSA 791

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  L+    D+  + +    + +  EP  +    P  L NG  GI  G 
Sbjct: 792  SPRYIFTMMSSLTRLVFPEKDDAVLTYLF-DDNQKIEPEWYCPIIPMCLVNGAEGIGTGY 850

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP+ ++++I E    +     I+ E+           TG I+ E  +          
Sbjct: 851  STKIPNFDIRDIVENVKRM-----INGEEPQPMFPSYKDFTGEIVQEGDQ---------- 895

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
              F  +    + +       I +TE+P +       E + ++      K  P + D ++ 
Sbjct: 896  -KFICQGTINIID----ETTIEITELPVRTWTQAYKETVLDVYLYGNEKSPPCITDYKEY 950

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     +             E +     + +   L+  VL    G + +      I+K
Sbjct: 951  HTDSTVKFVITMTPEQMVKAEEEGLHKKFKLLSSINLSCMVLFDEFGCIKKYESPTEIMK 1010

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------ 410
             +   R      R  F +  ++     L+      L   E   II N             
Sbjct: 1011 AFFNVRMAKYNERKKFILGMLEAECSKLENQARFILEKIEGKIIIENRSKRDVITTLVER 1070

Query: 411  ---DKPKPVMVSRFSLT---ENQVDA-------------------ILNLRLRSLRKLEEY 445
                 P     +    +   E+  +A                   +L++ + SL + ++ 
Sbjct: 1071 GYVSDPVKAWKAEVDKSGHLEDDSEAPTTDVASSSSSLSGPDFAYLLSMAIMSLSREKKE 1130

Query: 446  QIKSELDNLLAEKEKID 462
            ++ ++ D    E   + 
Sbjct: 1131 ELLNQRDEKKKELNALK 1147


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/163 (50%), Positives = 107/163 (65%), Gaps = 2/163 (1%)

Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205
            ++++ VDF   Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ E+    LA
Sbjct: 1   DLEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLA 60

Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRG 264
            ID+  ISIE L+ +I GPDFPT  I +  R  I E+YR GRG   +RAR  VE +   G
Sbjct: 61  YIDDENISIEGLMAHIPGPDFPTAAI-INGRRGIEEAYRTGRGKIYLRARAEVESDAKTG 119

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 120 RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 162


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 92/527 (17%), Positives = 186/527 (35%), Gaps = 76/527 (14%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N      L  + V  +S    + +  + ++ +    R+IP L DG KP  R+++    + 
Sbjct: 667  NNKPEPYLYGKEVSDISYSDFVNKELIHFSNADNI-RSIPSLMDGLKPGQRKVLFTCFKR 725

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN-- 120
                     + A  V E+    H  G+ S+  +++ LAQ F       L+   G FG   
Sbjct: 726  NDKKDIKVAQLAGSVAEMSAYHH--GEASLMGTIINLAQNFVGSNNINLLQPIGQFGTRL 783

Query: 121  IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  +A+ RY    ++ VA  +    DE  ++++   +    EP  +    P +L NG 
Sbjct: 784  HGGKDSASARYIFTMLSPVARYMFDQKDEPLLEYQF-EDNLRIEPDWYAPLIPVVLVNGA 842

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +T IP++N +EI +    L+       E+ +E                   + 
Sbjct: 843  EGIGTGYSTRIPNYNPREIVDNLKRLLAG-----EEPIE-------------------MH 878

Query: 241  ESYRLGRGGFRV--RARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELII---AK 293
              Y+  +G  +     ++ ++ V +      + + E+P +       E + E ++    K
Sbjct: 879  PWYKNFKGEIKQVEENKYQIDGVIKKINETTLEIVELPIRTWTQAYKEGVLEPMLHGGEK 938

Query: 294  RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRV 351
                + + ++   +     +     +         +     +E  F  N  VL  + G +
Sbjct: 939  TPSFISNYKEYHTDTTVRFIVTLTEANMEAAEKIGLLKKFKLEGSFSTNSMVLFDAHGCL 998

Query: 352  PQVMPLDGILKEWLAHRREVLFRRSS------------------FRMQAIDRRVEILKGL 393
             +      ILKE+   + E   +R                    F ++ ID ++ I    
Sbjct: 999  RRYGNAQEILKEFYETKLEFYVKRKEWLEGLLEAESRKLSNQARFILEKIDGKLAIENKS 1058

Query: 394  LIAYL------NIDEIIAIIRNEDKPKPVMVSRFSLTENQVD------AILNLRLRSLRK 441
                +      N D          +   V       +E + D       ILN+ + SL K
Sbjct: 1059 KRDLIAMLKSANFDSDPVKSWQNKQKSVVESEESDASEQETDEGPDFNYILNMNMWSLTK 1118

Query: 442  LEEYQIKSELDNLLAEKEKIDSLLNSGKQQ--WNQIACEIREVKEIF 486
              + ++   + N   +  +  +L     +      I   + E++  +
Sbjct: 1119 ERKDEL---IANKNKKIAEYQTLKEKTPKMLWLEDIEVFLEELEVSY 1162


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/143 (53%), Positives = 106/143 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            LE  ++ YA+S I  RA+P+ RDG KPVHRR+++     GL     ++KSA+IVG V+G
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD ++Y+++VR+AQPF  RY LI G GNFG+IDGDSAAA RYTEAR+++++  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 145 QGVDEDAVDFRDTYNEEDSEPVV 167
           + +D+D VDF D Y+  + EPVV
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVV 143


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/525 (18%), Positives = 191/525 (36%), Gaps = 77/525 (14%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ +A++    + +  + ++ +   ER+IP + DG KP  R+++    +  L     
Sbjct: 688  LYGKDTRAITYHDFVHKELVLFS-NLDNERSIPSVVDGLKPGQRKVLFTCLKRNLIREIK 746

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+QS+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 747  VAQLAGSVAELSA--YHHGEQSLMSTIIGLAQNFVGSNNLNLLQPIGQFGTRLSGGKDAA 804

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    +  +  LI    D+  +++    + +  EP  +    P +L NG  GI  G 
Sbjct: 805  SPRYIFTALNSLTRLIFHLEDDPLLNYLY-DDNQRIEPEWYAPIIPMVLVNGADGIGTGY 863

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            AT I ++NV EI      ++D      E+    +      TG I                
Sbjct: 864  ATHILNYNVIEIINNLYRMLDG-----EEPHRMLPNFRGFTGTIEDLGSN---------- 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIP-LLEDIRDE 304
              +       V +       + +TE+P +V      E + E  L  ++++P  + D ++ 
Sbjct: 909  -RYVCYGEVAVLDDD----TLEITELPIRVWTQNYKESVLEPMLNGSEKVPACITDYKEY 963

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   +     +     +     ++T       V       +        I++
Sbjct: 964  HTDVTVRFVIKMSPEKLREAESTGLHKFFKLQTVMSTGSMVCFDPLGCLKCYPNEIIIIR 1023

Query: 363  EWLAHRREVLFRRSSFR------------------MQAIDR--------RVEILKGLLIA 396
            E+   R     +R  +                   ++ I          + E+++ L  A
Sbjct: 1024 EFYELRLTWYEKRKVYLEGVLSAEARKLENQARFVLEKIQSIMVIENKPKKELIRMLKEA 1083

Query: 397  YLNIDEIIAIIRNEDKPKPVMVSRFSLTEN-------------QVDAILNLRLRSLRKLE 443
              + D + A   + DK   +     + T+                + ILN+ L SL K  
Sbjct: 1084 NYDSDPVKAWKESIDKAAALQEQEEARTDEAVSQTEAVEAGQPDYNYILNMPLWSLTKER 1143

Query: 444  EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +  + ++ D    E   + S   S    W     ++++++E + K
Sbjct: 1144 KDDLLAQRDAKQKELLILKS--KSPSDLW---REDLKKLEEEYKK 1183


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 115/145 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 166 VVFPSKFPNLLANGTSGIAVGMATS 190
            V P+K PNLL NG+SGIAVGMAT 
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMATK 145


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/131 (57%), Positives = 104/131 (79%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNE 160
           + VDF D ++ 
Sbjct: 121 ETVDFVDNHDG 131


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 187/450 (41%), Gaps = 37/450 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ +AVS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 734  LYNKDTRAVSFKDFVNKELVLFSNAD-NERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 792

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+ S+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 793  VAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 850

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V   +   VDE+ + F    N+   EP  +    P +L NG  GI    
Sbjct: 851  SPRYIFTQLNPVTRALFPIVDENVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 909

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP++N +EI +    LI   E               P       + E + +S  +  
Sbjct: 910  STKIPNYNPREIVDNMRRLIRGEE----------PKSLTPWFKNFRGTIEKLDDSRYICS 959

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   + +   +E          +TE+P +       E + E ++    K+ PL++D ++ 
Sbjct: 960  GEIALLSDDTIE----------ITELPIRTWTQNYKETVLEPMLEGSDKQPPLIQDFKEY 1009

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILK 362
              +     +   N +   +  ME +  +  +++   ++  VL      + +   ++ I K
Sbjct: 1010 HTDTTVKFVVKMNAAKLREAEMEGLHKIFKLQSAINISSMVLFDPLGCLRRFPNVEEICK 1069

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            E+   R++    R +F+   +  + E L     A   +++I   I  E+K K  +V +  
Sbjct: 1070 EFFEIRKKKYIERKAFQEGMLRAQSERLSN--QARFILEKIKGEILIENKRKVAIVEQLV 1127

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                  D +   R + L++  E ++  E+ 
Sbjct: 1128 KKGFDPDPV--KRWKELQRKRELEMTGEIQ 1155


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 182/444 (40%), Gaps = 33/444 (7%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   +      +A+ TI+ERA+P + DG KPV R I+ ++ +   + G  FKK+A
Sbjct: 3   VIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKNA 59

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            + G +    + HG+ +  D+   +A  +   +P+I G+GNFG       AA RY     
Sbjct: 60  AVAGVISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFCSK 119

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
            +  E + + ++        T +     P  +    P +L NG SGIA G AT I  H+V
Sbjct: 120 HERFESMFKDMELLE---ESTADGSI-LPRYYLPILPTVLLNGVSGIATGFATKIMPHSV 175

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
           Q + +    ++ + +    +    I  P F             + S       ++V   +
Sbjct: 176 QSVAKCVEQVLKSGKCDEPE----IQFPKFF----------GKILSIEGETQSWKVEGDY 221

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +     G   +++ E+P +  + + +  + +L+   +I       DES    R   F  
Sbjct: 222 EL----SGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVG----YDESKMKDREFCFKV 273

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREVLFRR 375
               D D+  E+I  +  +       + V+      +       ++ +++  R  VL +R
Sbjct: 274 TLKRDFDVSHENIIKVFKLSQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNVLQKR 333

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAILN 433
               + A   +++  +   + ++ +     I+ N    K V+    +  E +   D ++ 
Sbjct: 334 IDNAIIATREKLDFAQA-KVDFIKLVLADKIVFNRQTRKQVIEQINAFDELKTYADQLVQ 392

Query: 434 LRLRSLRKLEEYQIKSELDNLLAE 457
           + L  + + E  +++ ++  L  E
Sbjct: 393 MNLYHMTEDEVAKLEKQVAELQKE 416


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/131 (57%), Positives = 105/131 (80%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 150 DAVDFRDTYNE 160
           + VDF D ++ 
Sbjct: 121 ETVDFVDNHDG 131


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|260204186|ref|ZP_05771677.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
          Length = 257

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%)

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E
Sbjct: 3   DIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE 62

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           + +          RRT       AD     + +I +E + V I+  G+         RS 
Sbjct: 63  IVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 114

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           K     +     K+ D +       T D IL  +T G+ Y   A +L   S    G+ + 
Sbjct: 115 KRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVA 174

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKV 644
            L+     + I        Y     L    S+     V+   + + + R G   + +
Sbjct: 175 NLLAFQPEERIAQVIQIRGYTDAPYLGAGHSQRAGEKVQADRLRLQSLRAGIVAVNL 231



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 625 IVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           IV+       TR     +    +  ++  +      D V  + E         D      
Sbjct: 63  IVDRHGDDRRTR----IIAADGDVSDEDLIAR---EDVVVTITETGYAKRTKTDLYRSQK 115

Query: 683 R-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL-LGWLGKRG 734
           R GKGV+    K D  ++        + + +  + GR Y     DL       RG
Sbjct: 116 RGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 170



 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMK-LVVKVTGDHVAVVGENRKL 670
           ++ ++  G A   +     +  R GK      +  ++ +    V  T D +       ++
Sbjct: 94  VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 153

Query: 671 LIFSIDQIPEMSR-GKG 686
                  +PE SR  +G
Sbjct: 154 YRAKAYDLPEASRTARG 170


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 105/132 (79%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRDTYNE 160
           ++ VDF D ++ 
Sbjct: 121 KETVDFVDNHDG 132


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 123/246 (50%), Gaps = 20/246 (8%)

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           R    ++++ ++F  + ME+ F + M  +     P+V  L  +L  +L HR+ V+ RR+ 
Sbjct: 1   RDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKE-PKVFSLIELLNLFLNHRKTVIIRRTI 59

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNL 434
           + +Q    R  IL+GL IA  NIDE+IA+I+N       K +++ +F L+E Q +AIL++
Sbjct: 60  YELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDM 119

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           +L  L  LE  +I +EL  LLAE E++D +L S     N I  E++E++  F        
Sbjct: 120 KLGRLTGLEREKIDNELRELLAEIERLDQILKSETLLENLIKDELKEIRTKFDVP----- 174

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFK 546
                 ++         + +I  E + V I++RG+I+          K       A+   
Sbjct: 175 ---RITQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQYEKQKRGGKGKVAVTTY 231

Query: 547 EGDSLK 552
           + D ++
Sbjct: 232 DDDFIE 237


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF++ Y+  + EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
             
Sbjct: 181 TF 182


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 189/484 (39%), Gaps = 49/484 (10%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + ++V   SL   +      YA+ + +ER IP L DG KPV R ++    +        F
Sbjct: 1   MNKSVTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +K A I   V    + HG+ +  ++   +A  +    PL+ GQGNFG+     A A RY 
Sbjct: 61  RKMADIGSGVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYI 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
            AR+ +    I + ++          + E   P  +    P +LANG SGIA G  T I 
Sbjct: 121 FARVHENFFKIYKDMNCAPKH----EDLEHIPPAFYLPVVPMVLANGISGIATGYKTDIL 176

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            H+++ + E    L    ++  E     +  P F    I  + R+ ++       G + +
Sbjct: 177 PHSLESLIE-CTELALAGKLDKE---PSVQFPKFTGKVIPRDDRDGVIL-----EGTYEL 227

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
                      G   + ++E+PY+  +   +  +  L   ++  ++      S +  R  
Sbjct: 228 ----------NGKTTLTISEVPYKFDREEYVAVLDAL--EEKDLIVSYNDRCSKDGFRFE 275

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  K      +   +       +   F L   V     V     L  + ++       ++
Sbjct: 276 VTLKRDYFKSE---DESARHEKIMKDFKLTQLVAQNIVVVNERGLVEVFEKASD----LI 328

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLN--------IDEIIA-IIRNEDKPKPVMVSRFSL 423
            R    R+  +D+R+E+++   +   N        ID +I   I  + K K  ++   + 
Sbjct: 329 RRFVEIRLGYVDKRIELMQAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKAEVMQSING 388

Query: 424 TEN---QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            E      D ++++ L S+ + E  ++  + +   +E E              +   +++
Sbjct: 389 HEKLRPYADKLVSMPLYSVTQEEYDRLVKDAEKHHSEYEYWTKTTA-----MKEYKKDLK 443

Query: 481 EVKE 484
           E+K+
Sbjct: 444 ELKK 447


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 128/182 (70%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
             
Sbjct: 181 TF 182


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 98/481 (20%), Positives = 178/481 (37%), Gaps = 53/481 (11%)

Query: 1   MGVDNISNSNTLVEENVKAVSLRFALEERYLAYAL-STIKERAIPDLRDGFKPVHRRIIH 59
           M   N      L EE +     RF   + +  Y +  +    +IP L DG KP  R+++ 
Sbjct: 271 MQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYEIVCSWNLHSIPCLVDGLKPGQRKVLF 330

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGN 117
           A  +          + A  V E+    + HG+QS+  ++V LAQ +       L+   G 
Sbjct: 331 ACFKRANKREVKVAQLAGAVAEISA--YHHGEQSLMGTIVNLAQDYVGSHNINLLLPIGQ 388

Query: 118 FGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           FG     G  +A+ R   A+++QV   +    D++ + F    N+   EP  +    P +
Sbjct: 389 FGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFLYEENQRI-EPEWYCPIIPMV 447

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           L NG  G   G +T+IP++N +E+ +    L                        I  E 
Sbjct: 448 LVNGAQGTGTGWSTNIPNYNPRELVKNIKRL------------------------IAGEP 483

Query: 236 RESIVESYRLGRGGFRV----RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LI 290
           ++++   Y+  RG        R     E        I +TE+P +       EK+ E L+
Sbjct: 484 QKALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITELPIKQWTQDYKEKVLEGLM 543

Query: 291 I--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNMNVLS 347
               K+ P++ D ++   +     +   +     +L     +  +  ++        VL 
Sbjct: 544 ESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLF 603

Query: 348 MGR--VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +      + I +E+   R+E   +R  + +  +  + + L     A   +  I  
Sbjct: 604 DAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTN--QARFILATINN 661

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
            I  E+K K  +V      +   D +        +K +E Q   EL     E E  +  L
Sbjct: 662 KIVLENKKKTAIVDVLIKMKFDADPV--------KKWKEDQKLKELRE-SGEIELDEDDL 712

Query: 466 N 466
            
Sbjct: 713 A 713


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 197/529 (37%), Gaps = 53/529 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ + V+ +  +    + ++ +   ER+IP L DGFKP  R+++ A  +        
Sbjct: 720  LYNKDTRFVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFKRADKREVK 778

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+QS+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 779  VAQLAGAVAEISA--YHHGEQSLMGTIVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 836

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +++ V   +    D++ + F    N+   EP  +    P +L NG  GI  G 
Sbjct: 837  SARYIFTQLSPVTRTLFPAHDDNVLRFLYEENQRI-EPEWYCPIIPMVLVNGAQGIGTGW 895

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T+IP++N +E+ +    L                        I  E ++++   Y+  R
Sbjct: 896  STNIPNYNPRELVKNIKRL------------------------IAGEPQKALAPWYKNFR 931

Query: 248  GGFRV----RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LII--AKRIPLLED 300
            G        R     E        I +TE+P +       EK+ E L+    K+ P++ D
Sbjct: 932  GKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVD 991

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
             ++   +     +   +     +L     +  +  ++        VL      +      
Sbjct: 992  YKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLFDAAGCLRTYTSP 1051

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            + I +E+   R+E   +R  + +  +  + + L     A   + +I   I  E+K K  +
Sbjct: 1052 EAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTN--QARFILAKINNEIVLENKKKAAI 1109

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
            V      +   D +        +K +E Q   EL      +   D L     ++   I+ 
Sbjct: 1110 VDVLIKMKFDADPV--------KKWKEEQKLKELRESGEIELDEDDLAAVAVEEDEAISS 1161

Query: 478  EIREVKEIFSKSTDL-GRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
              + V+   S    L G       E  +       +  + +  +    +
Sbjct: 1162 AAKAVETKLSDYDYLVGMALIKLSEEEKNKLIKESEEKMAEVRVIEKKT 1210


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 159/399 (39%), Gaps = 40/399 (10%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N     T ++ + +A+     + +  + ++ + +  R+IP + DGFKP  R+++ +  + 
Sbjct: 685  NAYEPGTFLDMSGEAIRYDEFINKELILFSRADLL-RSIPSMVDGFKPSQRKVLFSCFKR 743

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L       + +  V E     + HG+ S+  ++V LAQ F       L+   G FG   
Sbjct: 744  KLKSDIKVAQLSGYVSE--HSAYHHGEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRL 801

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G   A+ RY   R+ ++   I    D+  +++ D  + +  EP  +    P +L NG 
Sbjct: 802  QGGKDHASPRYIFTRLHEICRAIFPECDDALLNYLD-EDGQRIEPDFYYPVLPLVLVNGA 860

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G +TSIP+ N ++I      +++      E+  +         G I+ E  +   
Sbjct: 861  EGIGTGWSTSIPNFNPRDIISNIKLVLEG-----EEARQMHPWYRNFNGSIVEEIVKG-- 913

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPL 297
                     + V   + +    R    + +TE+P +   +   + + +++        P 
Sbjct: 914  ------DSRYTVTGSYII----RDECTLEITELPLRSWTTDYKDFLEDMLAPKTKNEKPF 963

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR------- 350
            + D ++   +     +     ++ P+ L  +      +E +F L+  V            
Sbjct: 964  ITDYKEYHTDTTVHFVI----TMPPENLAAAQSAPGGIEKKFKLSTKVSISNMHLFNEHG 1019

Query: 351  -VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
             + +      +L+ ++  R +   +R    ++  + +++
Sbjct: 1020 AITKYASPIDVLQAFIPLRLKAYAQRRDMLIRLAESQLK 1058


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 196/482 (40%), Gaps = 49/482 (10%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             + L   ++E+  +Y  +  + R+IP + DG KP  R++++A     +   +  +K  R+
Sbjct: 646  DMPLSRFIKEKLSSYHRANNR-RSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVERL 704

Query: 79   VGEVIGKL-HPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGNI--DGDSAAAYRYT 132
             G+V     + HG+ S+  ++V +AQ FV      PL+   G++G     G   +A RY 
Sbjct: 705  AGKVASIAGYHHGEVSLSGTIVGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAARYL 764

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
                  +  ++    D+D  +     + E +EPV +    P +L NG  GI  G +T IP
Sbjct: 765  STYALPLTRILFPAEDDDLYERVL-EDNELNEPVNYLPILPMILVNGACGIGTGHSTEIP 823

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
            SHN  +ICE     +DN E         +       G + VE  +               
Sbjct: 824  SHNPLDICEWIRCWLDNKEKPY-----LVPWWRGFKGKVEVEDGKG-------------- 864

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            R    +E++ +  W I  +E P  +        +  L   ++   ++   D+  ++    
Sbjct: 865  RTFGILEKLSKEKWRI--SETPVGLWTYDCKMHLETL---EKNKHIKSFEDKYTDEEAAF 919

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP-QVMPLDGILKEWLAHRREV 371
            +    +   P +    +     ++     NM  L    VP +    + IL+++   R E+
Sbjct: 920  VITTTKDFTPTMSNLKLSKAFSLK-----NMTALDEDDVPVKFRSTEEILEKYCDARLEL 974

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VD 429
              +R    +  + + +           ++   +  ++ ++      +   +  + Q   D
Sbjct: 975  YQKRKEKLLNDLSQEIVKQANKQRFLKDVLNNVLNMKEQEDVLLKKMEEMNYDKWQNSFD 1034

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN--SGKQQWNQIACEIREVKEIFS 487
             ++++ +R+L K       +E+  +L + ++  SLL+  S K+ W     E+   ++ + 
Sbjct: 1035 YLVSMPIRTLTK----GRLAEVGEILRKLKEKHSLLSDKSPKEMW---KEELDTFEKKYK 1087

Query: 488  KS 489
            K 
Sbjct: 1088 KD 1089


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 87/179 (48%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 169/420 (40%), Gaps = 44/420 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ F      PL+   G FG     
Sbjct: 709  TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767  GKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKD-DDGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  E+ +  + L+   E+   K       P +      +E +E     
Sbjct: 826  IGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMK-------PWYFGFAGTIEEKE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F       V    R    + +TE+P         + + EL   + +    +  
Sbjct: 874  ----KGKFVSTGCANV----RPDGVVQITELPIGTWTQGYKKFLEELREKEVVVQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + L P         ++        +E R  L   + +          ++ + 
Sbjct: 926  TDVTVDFEVFLHP--------EVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
               + +LKE+   R E   +R  F +  +      L+ ++     + +   I+    K +
Sbjct: 978  RDAEAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRFVTEVVDGRLIVTRRRKKE 1037


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 96/456 (21%), Positives = 181/456 (39%), Gaps = 48/456 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ +AV+ +  +    + ++ +   ER+IP L DGFKP  R+++ A  +        
Sbjct: 703  LYNKDTRAVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFKRADKREVK 761

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+QS+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 762  VAQLAGAVAEISA--YHHGEQSLMGTIVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSA 819

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +++ V   I    D++ + F    N+   EP  +    P +L NG  GI  G 
Sbjct: 820  SARYIFTQLSPVTRSIFPAHDDNVLRFLYEENQRI-EPEWYCPIIPMVLVNGAQGIGTGW 878

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T+IP++N ++I +    L                        I  ES+++I   Y+  R
Sbjct: 879  STNIPNYNPRDIVKNIKRL------------------------IAGESQKAIAPWYKNFR 914

Query: 248  GGFRVRARWCV----EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKRIPLL 298
            G              E        I +TE+P +       EK+ E +       K+ PL+
Sbjct: 915  GNIIQIDSSRYACYGEVATIDDNTIEITELPVKQWTQDYKEKVLEALLDSSDKDKKAPLV 974

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLM-ESIFMLSDMETRFPLNMNVLSMG--RVPQVM 355
             D ++   +     +         +L   E +  +  +++       VL      +    
Sbjct: 975  LDYKEYHTDTTVKFVVKLAPGKLRELERGEDLHQVFKLQSVINTTCMVLFDAAGCLRTYS 1034

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              + I +E+   R+E   +R  + +  +  +    +    A   + +I   I  E+K K 
Sbjct: 1035 SPEEITQEFYDCRKEKYIQRKDYLLGVLQAQS--QRLTNQARFIVAKINNEIVMENKKKA 1092

Query: 416  VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
            V+V      +   D +   + +  +KL+E +   E+
Sbjct: 1093 VIVETLIKMKFDPDPV--KKWKEEQKLKELRESGEI 1126


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 87/182 (47%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
             
Sbjct: 181 TF 182


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 87/179 (48%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  +  +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 118/593 (19%), Positives = 204/593 (34%), Gaps = 105/593 (17%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ F      PL+   G FG     
Sbjct: 709  TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    DE  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767  GKDHAAGRYIFTRLTNIARYIYHPSDEFVVDYKD-DDGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  E+ +  + L+   E+   K       P +      +E +E     
Sbjct: 826  IGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMK-------PWYFGFTGTIEEKE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                RG F       V    R    + +TE+P         + + EL   + +    +  
Sbjct: 874  ----RGKFVSTGCANV----RPDGVVQITELPIGTWTQGYKKFLEELREKEVVVQYREHN 925

Query: 303  DESAEDVRIVLFP-------------------------------------KNRSLDPDLL 325
             +   D  + L P                                     K R  +  L 
Sbjct: 926  TDVTVDFEVFLHPEVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKYRDAEAVLK 985

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
               +  L     R    +  L      ++  +   + E +  R  V  RR    ++ + +
Sbjct: 986  EFYLVRLEYYAKRRDFLIGDL-RSVASKLENMVRFVTEVVDGRLIVTRRRKKELLEELRQ 1044

Query: 386  R--------------------VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
            R                     E  +G   A  +  E + ++      +          E
Sbjct: 1045 RGYAPFPLQQKKKVSSTTIQQGEEEEGAADATHSTAEDVFLVLQPAVDEGGDEDNQETPE 1104

Query: 426  -----NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-----SLLNSGKQQWNQI 475
                    D +L +RL +L      +++S+L     E   ++      L      Q    
Sbjct: 1105 MRRAARDYDYLLGMRLWNLTAEMIARLQSQLQKARDELAALEKRTPKDLWAEDLNQLRPR 1164

Query: 476  ACEIRE---------VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               + E          ++   K      RR     +S   +  L +  I+ E 
Sbjct: 1165 IENLFEDRAKEIASIQRKKMEKKRSFDPRRLRVPLLSEKARQALAKEFIKTEK 1217


>gi|289573609|ref|ZP_06453836.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
 gi|289538040|gb|EFD42618.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
          Length = 252

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%)

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            + E Q  AIL+++LR L  LE  +I  +L  + AE   ++ +L   ++Q   +  E+ E
Sbjct: 3   DIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE 62

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533
           + +          RRT       AD     + +I +E + V I+  G+         RS 
Sbjct: 63  IVDRHGD-----DRRTRII---AADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQ 114

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQ 591
           K     +     K+ D +       T D IL  +T G+ Y   A +L   S    G+ + 
Sbjct: 115 KRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVA 174

Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKV 644
            L+     + I        Y     L    S+     V+   + + + R G   + +
Sbjct: 175 NLLAFQPEERIAQVIQIRGYTDAPYLGAGHSQRAGEKVQADRLRLQSLRAGIVAVNL 231



 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 625 IVEESEIIANTRKGKTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682
           IV+       TR     +    +  ++  +      D V  + E         D      
Sbjct: 63  IVDRHGDDRRTR----IIAADGDVSDEDLIAR---EDVVVTITETGYAKRTKTDLYRSQK 115

Query: 683 R-GKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL-LGWLGKRG 734
           R GKGV+    K D  ++        + + +  + GR Y     DL       RG
Sbjct: 116 RGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 170



 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMK-LVVKVTGDHVAVVGENRKL 670
           ++ ++  G A   +     +  R GK      +  ++ +    V  T D +       ++
Sbjct: 94  VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 153

Query: 671 LIFSIDQIPEMSR-GKG 686
                  +PE SR  +G
Sbjct: 154 YRAKAYDLPEASRTARG 170


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 170/430 (39%), Gaps = 37/430 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K++S    + +  + ++ S   ER+IP + DG KP  R+++    +        
Sbjct: 684  LYGQETKSLSYHDFINKELVLFSNSD-NERSIPCMVDGLKPGQRKVVFCCFKRNDKREVK 742

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 743  VAQLAGSVAEMSA--YHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSA 800

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE-DSEPVVFPSKFPNLLANGTSGIAVG 186
            + RY    ++ +A L+   VD++ + +   Y++    EP  +    P +LANG  GI  G
Sbjct: 801  SPRYIFTMLSTLARLLFPVVDDNLLKY--NYDDNLRVEPEWYMPIIPLVLANGGEGIGTG 858

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             A+ IP+++V+EI      +++  E            P  P+      + + + ++  + 
Sbjct: 859  WASRIPNYDVREIINNIHRMLNGEE----------PLPMLPSYKGFKGTIDELAKNQYVN 908

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRD 303
             G   +     +E          +TE+P +       E + E+++    K   L+ D ++
Sbjct: 909  NGEVAIIDSTTIE----------ITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKE 958

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGIL 361
               +     +         +     +  +  ++     N  VL      + +   +  IL
Sbjct: 959  YHTDTTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDIL 1018

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            KE+   R +    R  + +  +    E  K    A   +++I   +  E+KPK  ++   
Sbjct: 1019 KEFFELRMKYYVLRKDWLVGML--GAESAKLSNQARFILEKIQGTLVIENKPKKELIRML 1076

Query: 422  SLTENQVDAI 431
                   D +
Sbjct: 1077 QQMGYDSDPV 1086


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/512 (15%), Positives = 182/512 (35%), Gaps = 74/512 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++    A+     + +  + ++++    R+IP + DG KP  R+++ +  +  L  
Sbjct: 701  PGTYLDHATDAICYSDFINKELILFSMADNV-RSIPSIMDGLKPGQRKVLFSCFKRKLKD 759

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  ++V +AQ F       L+   G FG     G 
Sbjct: 760  EIKVAQLAGYVSE--HSAYHHGEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAGGK 817

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +A  I    D+  ++  +  + +  EP  +    P +L NG+ GI 
Sbjct: 818  DAASSRYIFTSLSPLARKIFHLADDALLNHLE-DDGQTIEPEFYAPILPMVLVNGSDGIG 876

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++S+P++N +++  A +A+I+  E            PD             I     
Sbjct: 877  TGWSSSVPNYNPRDLVNALIAMIEGQE------------PD-ELHPWYAGFTGEI----- 918

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
              +G  +   R  ++++      I ++E+P +       E +  L      + P + +  
Sbjct: 919  TPKGKDKYAVRGTLKKLD--ETTIEISELPIRTWTQPYKEFLEGLAADDGKKPPQILEFS 976

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGI 360
                +     +             + ++ +  +E     +   L   +  + +   +  I
Sbjct: 977  QYHTDTTVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQEI 1036

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L+++   R  +  +R S     +    + +   +   L++     +I N  K   +   R
Sbjct: 1037 LRDFFDVRLRLYQKRKSLLADCMTSEYKKMDNKVRFILDVISGSLVISNRKKADILQELR 1096

Query: 421  FS--------------------------------------LTENQVDAILNLRLRSLRKL 442
                                                     + +  D +L++ + +L   
Sbjct: 1097 AKGFAAFPKPKGKKGAKTVGDLDDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTME 1156

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNS-GKQQWN 473
               ++  E +       ++++LL    +  W 
Sbjct: 1157 RVDKLTEERNGTE---AELNALLEKTPQDLWK 1185


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/512 (15%), Positives = 182/512 (35%), Gaps = 74/512 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++    A+     + +  + ++++    R+IP + DG KP  R+++ +  +  L  
Sbjct: 667  PGTYLDHATDAICYSDFINKELILFSMADNV-RSIPSIMDGLKPGQRKVLFSCFKRKLKD 725

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 + A  V E     + HG+ S+  ++V +AQ F       L+   G FG     G 
Sbjct: 726  EIKVAQLAGYVSE--HSAYHHGEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAGGK 783

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    ++ +A  I    D+  ++  +  + +  EP  +    P +L NG+ GI 
Sbjct: 784  DAASSRYIFTSLSPLARKIFHLADDALLNHLE-DDGQTIEPEFYAPILPMVLVNGSDGIG 842

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G ++S+P++N +++  A +A+I+  E            PD             I     
Sbjct: 843  TGWSSSVPNYNPRDLVNALIAMIEGQE------------PD-ELHPWYAGFTGEI----- 884

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIR 302
              +G  +   R  ++++      I ++E+P +       E +  L      + P + +  
Sbjct: 885  TPKGKDKYAVRGTLKKLD--ETTIEISELPIRTWTQPYKEFLEGLAADDGKKPPQILEFS 942

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGI 360
                +     +             + ++ +  +E     +   L   +  + +   +  I
Sbjct: 943  QYHTDTTVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQEI 1002

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L+++   R  +  +R S     +    + +   +   L++     +I N  K   +   R
Sbjct: 1003 LRDFFDVRLRLYQKRKSLLADCMTSEYKKMDNKVRFILDVISGSLVISNRKKADILQELR 1062

Query: 421  FS--------------------------------------LTENQVDAILNLRLRSLRKL 442
                                                     + +  D +L++ + +L   
Sbjct: 1063 AKGFAAFPKPKGKKGAKTVGDLDDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTME 1122

Query: 443  EEYQIKSELDNLLAEKEKIDSLLNS-GKQQWN 473
               ++  E +       ++++LL    +  W 
Sbjct: 1123 RVDKLTEERNGTE---AELNALLEKTPQDLWK 1151


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 179/444 (40%), Gaps = 31/444 (6%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            V    +   ++     +A+ TI+ERA+P + DG KP  R I++++ +   + G  FKK+
Sbjct: 2   KVTKRPISSMVDVEAREFAMYTIEERALPSVVDGLKPAQRYILYSVLK---NAGREFKKN 58

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A I G +    + HG+ +  D+   +A  +   +P+I G+GNFG+      AA RY    
Sbjct: 59  AAIAGVISEYGYNHGETAAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFCT 118

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
                + + + +D          +     P  +    P +L NG SGIA G +T I  HN
Sbjct: 119 KHSNFDSMFKDMDLLEESLA---DGSI-LPRYYLPILPTVLLNGVSGIATGFSTKILPHN 174

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           VQ + +    ++   +    +L      P F    I +E +             + +   
Sbjct: 175 VQSVAKCVEQVLKTGKCDEPEL----QFPKFFGKIIPIEGKS----------QSWTLEGE 220

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
           + +     G   + +TE+P +  + + +  + +L+ A +I       DES  D R   F 
Sbjct: 221 YEL----SGKTKLTITELPPKYDRVKYVTLLNKLVDADKI----VSYDESKFDGREFCFK 272

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFR 374
                + D   E+I     +       + V+   G +        ++ +++  R  VL +
Sbjct: 273 ITLKREFDATHENIMKTFKLSQAISQYIRVIDPNGELKAYEKASDLIVDFVNFRFGVLQK 332

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           R        + ++   +  +    + +D+ I    N  K     +S F   +   + ++ 
Sbjct: 333 RIDNAKLVANEKLGFARAKVTFIKHVLDQDIIFTNNTRKQVVEQISAFDDLKEYAEQLVQ 392

Query: 434 LRLRSLRKLEEYQIKSELDNLLAE 457
           + L  +   E  +++ ++  L  E
Sbjct: 393 MNLYHMTDDEVLKLEKQVIELKKE 416


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 110/142 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AMSE+G D    +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG++DGD+AAA RYTE RM ++A  +L  + ++ VD+   Y+  +  P V 
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 169 PSKFPNLLANGTSGIAVGMATS 190
           P++ PNLL NG+SGIAVGMAT+
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/140 (50%), Positives = 107/140 (76%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 146 GVDEDAVDFRDTYNEEDSEP 165
            ++++ VDF+D Y+  + EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/148 (77%), Positives = 127/148 (85%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMGL   ++FKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD+AAAYRYTEA+MT+VA L+L+G   DAVDFR TYNEED EP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 201/544 (36%), Gaps = 80/544 (14%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              T ++  +  + +   + +  + ++++    R+I  + DGFKP  R+++    +     
Sbjct: 752  PGTHLDPKLTHIPVSDFINKELILFSMADNM-RSIASVCDGFKPGQRKVLFGSFKRKFTV 810

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                 +    + E  G  H  G+ S+  +++ +AQ F       L+   G FG+    G 
Sbjct: 811  SIRVAQLVGYISEHTGYHH--GEASLGSTIMAMAQDFAGSNNIYLMKPDGGFGSRSQGGK 868

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AAA RY +  +  + + I    DE   ++  T ++   EP  +    P LL NG  GI 
Sbjct: 869  DAAAMRYAQTELMDITKAIFNKQDEPLYNYV-TDDDTPVEPEYYLPVLPMLLVNGCEGIG 927

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
             G +TSIP +N  +I +    ++                 D P   +I   R    E   
Sbjct: 928  SGWSTSIPPYNPLDIVDNLRRMLK----------------DEPPVPMIPWFRGWHGEVEP 971

Query: 245  LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--LLEDIR 302
            +G G ++V+    +E+V      + +TE+P ++    + E +   +I  +     +ED  
Sbjct: 972  VGDGRYKVKGL--IEQVD--ERTLCITELPARMWTISMKEFLLSSLIDSKNEKGWIEDFT 1027

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
            ++    V+  +    + ++    +        + +    NM      GR+ +    + I+
Sbjct: 1028 EDHGFRVKFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYDSPEAIM 1087

Query: 362  KEWLAHRREVLFRR-------SSFRMQAIDRRVEILKGLLIAYLNI-------------- 400
            KE+   R E   +R          +++ +  +   +K ++   LNI              
Sbjct: 1088 KEYFPVRLEFYQKRKDRLVSDFEQQLEKLTAQARFIKLIIDKKLNINNKGRKVLIAELSE 1147

Query: 401  ---------------DEIIAIIRNEDKP--------KPVMVSRFSLTENQVDAILNLRLR 437
                           D   AI  +E+ P                 +  N  D +L + L 
Sbjct: 1148 LKFPRYGKNGERLASDAKAAIAEDEEAPSDEVAEDLAEAEEIHGKIPTNGYDYLLGMALW 1207

Query: 438  SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            SL K    ++  E D    ++E++  LL    +  +    ++    E + K  +    + 
Sbjct: 1208 SLTKERYEKLLRERD---GKEEELIELLKKSAK--DIWMDDLDVFMEAYEKFEEQDVEKQ 1262

Query: 498  TFCE 501
               +
Sbjct: 1263 QKLD 1266


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 127/181 (70%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180

Query: 252 V 252
            
Sbjct: 181 F 181


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 169/420 (40%), Gaps = 44/420 (10%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            +N N  +  NV+ V     +++  + ++++   ER+IP + DG KP  R+II +  +  L
Sbjct: 650  TNVNESMNYNVRTVRYSEFVDKELILFSVADC-ERSIPSVIDGLKPGQRKIIFSSFKRRL 708

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                   + A  V E     + HG+QS+  ++V LAQ F      PL+   G FG     
Sbjct: 709  TRSIKVVQLAGYVSEHAA--YHHGEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTRLQG 766

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G   AA RY   R+T +A  I    D+  VD++D  +    EP  +    P +L NGTSG
Sbjct: 767  GKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKD-DDGLSVEPFYYVPVIPMVLVNGTSG 825

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G AT+IP+++  E+ +  + L+   E+   K       P +      +E +E     
Sbjct: 826  IGTGFATNIPNYSPLEVIDNLMRLLRGEEVQPMK-------PWYFGFAGTIEEKE----- 873

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
                +G F       V    R    + +TE+P         + + EL   + +    +  
Sbjct: 874  ----KGKFVSTGCANV----RPDGVVQITELPIGTWTQGYKKFLEELREKEVVVQYREHN 925

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--------RVPQV 354
             +   D  + L P         ++        +E R  L   + +          ++ + 
Sbjct: 926  TDVTVDFEVFLHP--------EVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKY 977

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
               + +LKE+   R E   +R  F +  +      L+ ++     + +   I+    K +
Sbjct: 978  RDAEAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRFVTEVVDGRLIVTRRRKKE 1037


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +KKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
            KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G + D  S AA RY
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/181 (46%), Positives = 126/181 (69%), Gaps = 1/181 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
            KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180

Query: 252 V 252
            
Sbjct: 181 F 181


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/178 (48%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
            KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/179 (48%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R++++AE++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/585 (15%), Positives = 197/585 (33%), Gaps = 97/585 (16%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + T  + NV++V+    + +  + +++   K R+IP L DGFKP  R+++ +  +  L  
Sbjct: 679  AGTHADYNVESVTYESFINKELILFSMEDNK-RSIPCLVDGFKPSQRKVLFSCFKRNLKK 737

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E     + HG+ S+  ++  +AQ F       L++  G FG   + G 
Sbjct: 738  EIKVVQLAGYVSE--HSAYHHGETSLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLMGGK 795

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA+ RY    + + A  +    D+  + + D  +    EP  +    P +L NG+ GI 
Sbjct: 796  DAASPRYIFTALQKAARAVFHPDDDALLTYLD-DDGLSIEPEFYMPIIPLILVNGSDGIG 854

Query: 185  VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES-- 242
             G ++++P+++  ++               E L   I G  F       +     +E+  
Sbjct: 855  TGWSSNVPNYSPHDVI--------------ENLKRRIKGDKFVEMQPWYKGFAGSIEAKV 900

Query: 243  -YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPL- 297
              +   G + VR              + +TE+P +       + +  L+      +    
Sbjct: 901  GKKGFEGSYTVRGIAN----RIDDTTVEITELPVRKWTQDYKQFLESLLPGAEDAKSKDA 956

Query: 298  -----------------------LEDIR-DESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
                                   ++D + + +   V   +      LD     + ++   
Sbjct: 957  KGNGKGKGKGKGAADKDKSPTRCIKDFKENHTDTTVHFTVTMSMEDLDALEKGDGLYKFF 1016

Query: 334  DMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
             +E+    N  VL    G + +      I++E++  R E   RR +  +  +      L 
Sbjct: 1017 KLESSVSTNNMVLFDQDGHLERYESPQHIMEEFITLRSEFYGRRKTSLLSKLQSEWSKLD 1076

Query: 392  GLLIAYLNIDEIIAIIRNEDKPK-------------------------PVMVSRFSLTEN 426
              +   L + E    + N  K +                                   E 
Sbjct: 1077 NKVRFILAVVEDRMQVNNRKKSELLEQLKREGYDLFLPTTSKLRVAGGAEDGEGEDGNEE 1136

Query: 427  QV-----------DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ- 474
                         D +L +++ SL       +++EL+    E   + +   S     +  
Sbjct: 1137 SAADDSDTLSKGYDYLLGMKIWSLTLERVKLLENELEGKAEEMRILKATAPSELWLKDLD 1196

Query: 475  -IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +   + E+ +I  K      ++       +       +   + +
Sbjct: 1197 ALGDVLDEIDDIIRKQEVEDTKQRKNAGKRKGGGRGRGRGAHDDD 1241


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 170/472 (36%), Gaps = 49/472 (10%)

Query: 21   SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            S +  + +  + ++ +    R+IP   DG K   R+++ A  +  L       + A    
Sbjct: 654  SYKDFVNQELIQFSHAD-NTRSIPSAIDGLKTSQRKVLFACLKRKLFQEMKVAQLAGYCS 712

Query: 81   EVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARM 136
            E     + HG+ S++ ++V +AQ +       L+   G FG     G  AA+ RY   ++
Sbjct: 713  EHTA--YHHGEASLHSTIVNMAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFTKL 770

Query: 137  TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
             +   LI    D+  +++ D  +    EP  +    P LL NG+ GI  G +T IP+HN 
Sbjct: 771  NKHTRLIYPEEDDALLNYND-DDGISVEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNP 829

Query: 197  QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES---YRLGRGGFRVR 253
             E+ +  L L+D+       +    + P F         R SI  +       +G  R  
Sbjct: 830  IEVIDRMLHLLDSSNSRDHGVPPASLLPWF------RGFRGSIEAAGLQTYTTQGTIRHL 883

Query: 254  ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
                          + + E+P         + + + +  K I    +   E     RI L
Sbjct: 884  ----------NPTTLEILELPIGKWIDDYKKTLWDFLQKKLIRSFTEHHSEEHVCFRIQL 933

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLAHRREV 371
               + +   D+    +     +E++   N          + +    D ++K +L  R ++
Sbjct: 934  SRADSTFFLDMSPIELVRFFKLESKLNTNNMHAFDPNYTLQRFSSSDDVIKAFLPVRLDL 993

Query: 372  LFRRSSFRMQAIDR---RVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQ 427
              RR  + ++        ++     +      D    + R   K +   ++     T  Q
Sbjct: 994  YNRRKEYLVKKQQCDVLELQNRVRFIAQVSAGDLQCILTRKMTKHQVAAVLDSQGYTPEQ 1053

Query: 428  ----------------VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                             D +LN+ + S    +  +++ E    L E  K+  
Sbjct: 1054 EFRYDEKSTNDNPASDFDYLLNMSMWSFTLDKANRLEKEHLERLTELRKLQK 1105


>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 433

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 123/335 (36%), Gaps = 41/335 (12%)

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L+  +  +E   L+ +  +++ LL+S       I  E  E+K  F+       RR++  +
Sbjct: 3   LQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASP-----RRSSLED 57

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKI 553
              +    +   ++  E + +  S +G+++ +K          ++  S    +  D++  
Sbjct: 58  SDGSQLDDI--DVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSD 115

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---Y 608
           ++     D +L  S  G  Y+  A  +   S    G  +  ++ L+  + I +      +
Sbjct: 116 SIVCRAHDHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEF 175

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGEN 667
                LL+++  G    V  +   A    G   +++   +++K V   T +  VA+   N
Sbjct: 176 SGDQFLLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLN 235

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISDVICFKICEGLT------------- 710
             +++ S + I  +SR  +G      K G      D+I   + + L              
Sbjct: 236 GMVILSSCENIRALSRNTRGGVAMRLKGGDKMASMDIIPVAMRKDLERVLEDPRSNSKGS 295

Query: 711 ---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
               +  +   Y +        L     VG +  K
Sbjct: 296 GPWLLFVSENGYGKRVPLSSFRLSPLNRVGLIGYK 330



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK------SHSVDLSALHFK 546
           G R T+   VS                  ++++  G+I+ +         S  + A+   
Sbjct: 163 GERITSIIPVSEFSGD----------QFLLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLV 212

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS---GRGHGEAIQL----------L 593
            GD LK        D + + S +G        N+ +       G A++L          +
Sbjct: 213 PGDELKWVRCCTNNDLVAMASLNGMVILSSCENIRALSRNTRGGVAMRLKGGDKMASMDI 272

Query: 594 IDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVS 645
           I +   +D+             S   LL VS  G    V  S        R G    K S
Sbjct: 273 IPVAMRKDLERVLEDPRSNSKGSGPWLLFVSENGYGKRVPLSSFRLSPLNRVGLIGYKFS 332

Query: 646 SEEKMKLVVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           +E+++  V  V         + + V +V ++  +    +  I   SR  +GV L   +  
Sbjct: 333 AEDQLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVQDISIQSRFARGVILMRLEQA 392

Query: 696 G 696
           G
Sbjct: 393 G 393


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/143 (58%), Positives = 113/143 (79%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 173 PNLLANGTSGIAVGMATSIPSHN 195
           PNLL NG+SGIAVGMAT+IP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/134 (56%), Positives = 105/134 (78%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 2   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 61

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 62  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 121

Query: 142 LILQGVDEDAVDFR 155
            ++  ++++ VDF 
Sbjct: 122 ELMADLEKETVDFV 135


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 185/476 (38%), Gaps = 49/476 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   +      YA+ + +ER IP L DG KPV R ++    +        F+K A I  
Sbjct: 15  SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ +  ++   +A  +    PL+ GQGNFG+     A A RY  AR+ +  
Sbjct: 75  GVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENF 134

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             I + ++          + E   P  +    P +LANG SGIA G  T I  H+++ + 
Sbjct: 135 FKIYKDMNCAPKH----EDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLI 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           E    L    ++  E     +  P F    I  + R+ ++       G + +        
Sbjct: 191 E-CTELALAGKLDKE---PSVQFPKFTGKVIPRDDRDGVIL-----EGTYEL-------- 233

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   + ++E+PY+  +   +  +  L   ++  ++      S +  R  +  K    
Sbjct: 234 --NGKTKLTISEVPYKFDREEYVAVLDAL--EEKDLIVSYNDRCSKDGFRFEVTLKRDYF 289

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             +   +       +   F L   V     V     L  + ++       ++ R    R+
Sbjct: 290 KSE---DESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASD----LIRRFVEIRL 342

Query: 381 QAIDRRVEILKGLLIAYLN--------IDEIIA-IIRNEDKPKPVMVSRFSLTEN---QV 428
             +D+R+E+++   +   N        ID +I   I  + K K  ++   +  E      
Sbjct: 343 GYVDKRIELMQAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKAEVMQSINGHEKLRPYA 402

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           D ++++ L S+ + E  ++  + D   +E E              +   +++E+K+
Sbjct: 403 DKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTA-----MKEYKKDLKELKK 453


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/152 (46%), Positives = 110/152 (72%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD 
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            F   +++ + EP V P+ FPNLL NG+SGI+
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGIS 152


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 110/154 (71%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            +++ + EP V P+ FPNLL NG +GI+ G AT 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 181/506 (35%), Gaps = 67/506 (13%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
               E + + V     +   Y+ ++ S   ER+IP L DGFKP  R+I+ A  +  L    
Sbjct: 656  NYSEVSKEGVMYSEFINREYILFSKSD-NERSIPHLLDGFKPSQRKILFACFKRKLKGEI 714

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSA 126
               +    V E     + HG+ S+  ++V +AQ F       L++  G FG   + G  A
Sbjct: 715  KVAQLTGYVAE--HSAYHHGEASLQATIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDA 772

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            A+ RY   ++  +   I    D++ + +    +    EP  +    P +L NG  GI  G
Sbjct: 773  ASARYIFTKLEPITRAIFHPDDDELLSYI-NDDGVTVEPEYYVPVIPMILVNGADGIGTG 831

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES-IVESYRL 245
             +TS+ ++N +EI                 L   I G DF          +  I+     
Sbjct: 832  WSTSVNNYNPREIVRN--------------LRRKIAGEDFVAMAPFYSGFKGEIIPVDSN 877

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIR 302
             R          VE +      I+++E+P +         +  ++     K++P ++D  
Sbjct: 878  SRRSGSYDMLGKVERI--NDTTIIISELPVRKWTQDYKAFLEIMLTGDGKKKLPEIKDFT 935

Query: 303  DESAEDVR--IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
            +   E      ++  K +  + +     +     +      +   L     R+ +    +
Sbjct: 936  ENHTETTVSFTIIAEKEKIDEFEKEKAGLMGKFKLTGSLSTSNMTLFDERGRITRFEDPE 995

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDR----------------RVEILKGLLIAYLNIDE 402
             I+  +   R +   +R    ++ +                  RVE++         + E
Sbjct: 996  SIMNAFYDIRLDFYDKRKRLLVKKLKEEQRKLSNKARFVEEVCRVELVVNNRKRQDILHE 1055

Query: 403  IIAIIRN-------EDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQI 447
            +               +         S+ E+Q DA        +L +++ SL   +  ++
Sbjct: 1056 LRNRGYETFGADARSKETSDSDGEEDSINESQSDAELARGYEYLLGMKIWSLTFEKAEEL 1115

Query: 448  KSELDNLLAEKEKIDSLLN-SGKQQW 472
            +     L  +  ++++L   S  + W
Sbjct: 1116 RR---KLGEKTTELNALQGTSPSELW 1138


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 111/158 (70%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           + +  +ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S
Sbjct: 2   SKTLFRERALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSS 61

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V 
Sbjct: 62  IYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVP 121

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           +   +++ + EP V P+ FPNLL NG +GI+ G AT I
Sbjct: 122 WAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/128 (56%), Positives = 97/128 (75%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + V  V+L   + + YL YA+S I  RA+PD+RDG KPVHRR+++AMS +G D+   +KK
Sbjct: 6   KEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 135 RMTQVAEL 142
           RM ++   
Sbjct: 126 RMAKIGPQ 133


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 112/160 (70%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   + ER+  Y+   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A 
Sbjct: 61  IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            +LQ ++++ V F   +++ + EP V P+ FPNLL NG+S
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSS 160


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 251 RV 252
             
Sbjct: 181 TF 182


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 114/148 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +S P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/179 (47%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           +K SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/574 (16%), Positives = 209/574 (36%), Gaps = 60/574 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG-L 66
               T+++ ++  + +   + +  + ++L+    R+IP L DG KP  R++I    +   +
Sbjct: 665  EPGTVLDPHLTEIQIGDFINKELILFSLADNL-RSIPHLLDGLKPSQRKVIFGSFKRNIM 723

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--D 122
                  ++ A  V       + H +QS+  ++V LAQ F       L+  +G FG     
Sbjct: 724  KTEIKVQELAAYVSGQTA--YHHTEQSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRATG 781

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  AAA RY   ++  +++ +   +D   + +    +E+  EP  +    P +L NG  G
Sbjct: 782  GKDAAAARYIFTQLNSISKHVFNPLDNPLLTYVQ-DDEKTVEPEWYVPALPMVLVNGAEG 840

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +TSIP  N  +I      L+       + +  +  G +     I  +        
Sbjct: 841  IGTGWSTSIPPFNPIDIVNNLRKLMRGD--EPDDMAPWFRGWNGTMQKIDAQ-------- 890

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI--IAKRIPLLED 300
                    R R    +E+V  G   + +TE+P +   + + E +   +    +  P ++D
Sbjct: 891  --------RYRIFGRIEQV--GENTVEITELPARTWTTTIKEHLLLALSGNERTKPWVKD 940

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDG 359
            ++++    ++ V+      ++    +        + T    NM +      + +   +  
Sbjct: 941  MQEQHGATIKFVVTLTPEEMERTRKIGFYERFKLISTVSLSNMVLFDAHNKIKKYNDVKE 1000

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL ++   R E   +R  + ++ +  ++E +   +    + IDE + + +         +
Sbjct: 1001 ILTDFFYVRLEFYQKRKDYMIERLQWQLEKLSFQVKFIKMIIDEELRVTKKARSVLMKEL 1060

Query: 419  SRFSLTENQVD-----AILNLRLRSLRKLEEYQIKSELDNLLAEKEK------------- 460
                      +       ++  L  +   +  +   ELD    E                
Sbjct: 1061 ESLGFPRVDAEGKPHFEKIDEDLEEMDASDPEEFAEELDEQGGEVADENVVVGPLEKFGT 1120

Query: 461  IDSLLNSGKQQWNQIACE----IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             + LL    + W+    +    +RE +   ++  +L  +       +  D    +     
Sbjct: 1121 YEYLLG--MKIWSLTKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMFVREYEEFI 1178

Query: 517  KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
            K    V     G IR++ S        H  + D 
Sbjct: 1179 KYDTEV---RDGTIRAVGSKVKGKKRAHKDDDDY 1209


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD  AA RYTEAR++++A+ +LQ +D++ V +   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 126/178 (70%), Gaps = 1/178 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KSAR VG+ +GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 178


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 185/476 (38%), Gaps = 49/476 (10%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           SL   +      YA+ + +ER IP L DG KPV R ++    +        F+K A I  
Sbjct: 15  SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            V    + HG+ +  ++   +A  +    PL+ GQGNFG+     A A RY  AR+ +  
Sbjct: 75  GVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVHENF 134

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200
             I + ++          + E   P  +    P +LANG SGIA G  T I  H+++ + 
Sbjct: 135 FKIYKDMNCAPKH----EDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLESLI 190

Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260
           E    L    ++  E     +  P F    I  + R+ ++       G + +        
Sbjct: 191 E-CTELALAGKLDKE---PSVQFPKFTGKVIPRDDRDGVIL-----EGTYEL-------- 233

Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
              G   + ++E+PY+  +   +  +  L   ++  ++      S +  R  +  K    
Sbjct: 234 --NGKTKLTISEVPYKFDREEYVAVLDAL--EEKDLIVSYNDRCSKDGFRFEVTLKRDYF 289

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
             +   +       +   F L   V     V     L  + ++       ++ R    R+
Sbjct: 290 KSE---DESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASD----LIRRFVEIRL 342

Query: 381 QAIDRRVEILKGLLIAYLN--------IDEIIA-IIRNEDKPKPVMVSRFSLTEN---QV 428
             +D+R+E+++   +   N        ID +I   I  + K K  ++   +  E      
Sbjct: 343 GYVDKRIELMQAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKSEVMQSINGHEKLRPYA 402

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           D ++++ L S+ + E  ++  + D   +E E              +   +++E+K+
Sbjct: 403 DKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTA-----MKEYKKDLKELKK 453


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 110/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 109/139 (78%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AMSE+G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  +D++ VD+   Y+  +  P V P
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 170 SKFPNLLANGTSGIAVGMA 188
           +K PNLL NG+SGIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 173/424 (40%), Gaps = 26/424 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +      YA+ T+++RAIP++ DG KPVHR +++   ++         K A + G 
Sbjct: 7   LTEVINNEAKEYAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGG 66

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V    + HG+ S  D+   +A  +   +P + G+GNFG+     AAA RY   R+++   
Sbjct: 67  VADAGYHHGEGSAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENFS 126

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
            + +  +   V      + E   P  +    P +L NG  GIA G AT+I  H+++ + E
Sbjct: 127 KVFKDENVAPVH----EDPEHKPPRFYLPVIPVVLLNGVEGIATGYATNILPHSIKSVIE 182

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
                ++      E  +EY   P F         +  +  +Y++                
Sbjct: 183 CTRQALNGVVDIKEPSVEY---PKFSGKIYRDGPKCELHGTYKITS-------------- 225

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                 + +TEIPY   +++ +EK+ + +  K      D   ++    +I +  +     
Sbjct: 226 ---KTQMEITEIPYSFDRAKYVEKVLDPLEDKGFISYSDNCGKNGFGFKIKMRKEAGLEL 282

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
            +   + I  +  +  R   N+ V+   G++        ++K ++  R E + +R   ++
Sbjct: 283 TEENHDKIMKMFGLIERLSQNITVIDENGKLRVFESAVELIKHFVEVRTEYVKKRIHAKI 342

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ-VDAILNLRLRSL 439
              D + +IL         + +   +I  + + + V   +      Q  + ++ L +  +
Sbjct: 343 IETDSKAKILTAKARFINAVIKGDIVIAGKTRKQLVEELKAIDNLAQYAEELVLLNIYHI 402

Query: 440 RKLE 443
              E
Sbjct: 403 TSDE 406


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/150 (57%), Positives = 114/150 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEIS 213
           AVGMAT+IP HN+ E+ +  LA IDN  I+
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDNEAIT 150


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 111/141 (78%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++AM E+  ++ AA+KKSARIVG+VIGK HPHGD  VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G      ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 108/141 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMA 188
            P+K P LL NG+SGIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 101/129 (78%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAELILQ 145
            ++A  ++ 
Sbjct: 128 AKIAHELMA 136


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 99/124 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+   +KKSA
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 137 TQVA 140
           +++A
Sbjct: 128 SKIA 131


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 98/125 (78%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVAE 141
            ++A 
Sbjct: 128 AKIAH 132


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/511 (16%), Positives = 171/511 (33%), Gaps = 71/511 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T +   +  +     + +  + ++++    R+IP + DG KP  R++I +  +  
Sbjct: 761  QFKPGTFLGHRLDEIPYSEFVNKELILFSMADNI-RSIPSIADGLKPDQRKVIWSCFKRN 819

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
            L       +    V E    ++ HGD S+  ++V LAQ F       L+   G +G  ++
Sbjct: 820  LKKEIKVIQLVGYVSE--HSVYHHGDASLTQTIVALAQDFVGSNNLNLLVPCGQYGTRDM 877

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY    +  ++  I    D+  +  + T      EP  +    P +L NG  
Sbjct: 878  GGKDHASARYINTLLQPISRTIFNPDDDAILTPQ-TDENHVIEPEFYMPIVPMVLINGAE 936

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T++P  N  +I      L++N E               P        +  I +
Sbjct: 937  GIGTGWSTNVPGFNPLDIVANIRRLMNNEEQ-------------VPMHPWWRGFKGEIKQ 983

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                 +  + V               + +TE+P          ++  +++ ++       
Sbjct: 984  ---TAKNKYDVTGVVT----KVDDTTVEITELPIHKWTQTFKTELETMLVGEKGEGSVKN 1036

Query: 302  RDESA--EDVRIVLFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMGRVPQVMPL 357
              E    E+V  V+    + L        +  F L+   T   +       G++ +    
Sbjct: 1037 YQEHHANENVHFVVQMDAKELVKAEEKGLLEYFKLTSKITTSNMICFDF-DGKIKKYESP 1095

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---- 413
            + IL E+ A R     +R       +    E L         I E    +    +     
Sbjct: 1096 EAILDEFYAVRLGYYQKRKDHLASQLQMVFERLSNQARFVQMIVEKKLAVSGRKRADIVV 1155

Query: 414  ------------------------------KPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                                           P   +    + +  D +L++ + +L K +
Sbjct: 1156 DLKKHDFKPFPKKKAKTTSVGPEAEDEEEEDPDAGTEAEGSASDYDYLLSMPIWNLTKEK 1215

Query: 444  EYQIKSELDNLLAEKEKIDSLLNS-GKQQWN 473
              +++ +  +   ++ ++  LL    K  WN
Sbjct: 1216 FEKLRKQAAD---QEAELLRLLEKTPKDLWN 1243


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 99/548 (18%), Positives = 200/548 (36%), Gaps = 78/548 (14%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N  +  + ++ +  +V+ +  +    + ++ +   +R++P + DG K   R+++ A  + 
Sbjct: 651  NEYSPASYLDTSSGSVTYQDFVNRELIQFSHAD-NQRSLPSVVDGLKISQRKVLFACMKR 709

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L       + A    E     + HG+ S++ ++V +AQ F   +  PL+   G FG   
Sbjct: 710  KLTSEVKVAQLAGYCSEHTA--YHHGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRL 767

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  AA+ RY    + +   L+    D+  + + D  +    EPV +    P LL NG 
Sbjct: 768  QGGKDAASPRYIFTLLQKHTRLVFPEEDDALLRYAD-DDGFPVEPVFYVPIIPMLLVNGA 826

Query: 181  SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
             GI  G ++SIP H+   + +  L L+D  E   +     +   +        +     +
Sbjct: 827  EGIGTGWSSSIPCHHPVLVIDNLLKLLDAEEAGDD-----LSIVELSLMTPWAKGFSGDI 881

Query: 241  ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
                   G     +R  VE+V   +  + VTE+P         + + +L+  K I    +
Sbjct: 882  R----QTGKHSFVSRGNVEQV--NTSTVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSE 935

Query: 301  IRDESAEDVRIVLFPKNRSL--------------DPDLLMESIFMLSDMETRFPLNMNVL 346
               E   DVR  +      L              D + L++ + + + + T    NM+  
Sbjct: 936  HHSE--RDVRFDISMTRSDLAKYAEDAAENCDAGDSEALVKLLRLEAPLSTS---NMHAF 990

Query: 347  S-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFR-------------------------M 380
            +  G++ +    + +L+++   RR++  +R                             +
Sbjct: 991  NADGQLVKYETSEDVLRDFYGVRRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSL 1050

Query: 381  QAIDRR---------VEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428
            Q I R          +    G   A    +E I  + +       +    +         
Sbjct: 1051 QKILRERIPKAELIDLLKEHGFAPASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSEDY 1110

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            D +LN  L S  K    +++ E D    + +++ +   +  Q W      +R V   F  
Sbjct: 1111 DYLLNTSLMSFTKEFADRLRKEHDTKQDKLQQLQA--TTPAQLWRNELERLRAVLSHFLN 1168

Query: 489  STDLGRRR 496
                  +R
Sbjct: 1169 ENSATLKR 1176


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/146 (56%), Positives = 111/146 (76%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           +++N+  +S+   LE+ YL+YA+S I  RAIPD+RDGFKPVHRRI++AMS  G D G  +
Sbjct: 1   MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD  A+ RYT
Sbjct: 61  KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120

Query: 133 EARMTQVAELILQGVDEDAVDFRDTY 158
           EAR+ +V+  +L  +DE+ V +  TY
Sbjct: 121 EARLQKVSHFLLNDIDENTVRYLATY 146


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 109/141 (77%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRR+++ M E+  ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           AQ F  RY LI GQGNFG++DG +AAA RYTE RM +++  +L  ++E+ V+F   Y+  
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 162 DSEPVVFPSKFPNLLANGTSG 182
           + EP+V P++FP LL NG+SG
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 167/436 (38%), Gaps = 39/436 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K ++    +    + ++ S   ER+IP L DG KP  R+++    +        
Sbjct: 668  LYTKGTKHITYSDFINLELVLFSNSD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 726

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ +       L+  +G FG     G   A
Sbjct: 727  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCA 784

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++ T + +  EP+ +    P +L NG  GI  G 
Sbjct: 785  SARYIFTLMSPLTRLIYHPLDDPLLDYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGW 843

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I +HN +EI      +I++ +            P  P         E + +   +  
Sbjct: 844  STKIANHNPREIIRNLRRMINSED----------PLPMHPWYKNFRGRIEYVSDGRYVHT 893

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G  ++     +E          +TE+P  V      E + E++     K   ++ + R+ 
Sbjct: 894  GNIQMLPGDRIE----------ITELPLGVWTQTYKENVLEVLSNGTDKVKAVVSEYREY 943

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +        NR    +     +F L+   +   ++        + +      
Sbjct: 944  HTDTTVRFVVSFAPGEFNRLRSEEGGFYRVFKLTSSLSTNQMHAFD-QSNCLRRFPSSID 1002

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   R E   RR  + +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1003 ILKEFYTLRVEYYCRRKDYLVGQLTAQAD--RLSDQARFILEKCEKTLVVENKQRKAMCE 1060

Query: 420  RFSLTENQVDAILNLR 435
              +    + D +   +
Sbjct: 1061 ELAKRGYRPDPVKEWQ 1076


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 114/148 (77%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G++DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 82/139 (58%), Positives = 105/139 (75%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVG 186
            P+K P LL NG+SGIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 118/148 (79%), Positives = 128/148 (86%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRRIIHAMSEMG+   +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F 
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           QRYP++ GQGNFGNIDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSH 194
           V P  FPNLLANG SGIAVGMAT+IP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 108/144 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVAELILQGVDEDAVDF 154
           YTEARMT++   +L+ +++D +DF
Sbjct: 123 YTEARMTKITLELLRDINKDTIDF 146


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 179/501 (35%), Gaps = 65/501 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T +++N K +     + +  + ++++   +R+IP + DG KP  R+I+    +    
Sbjct: 661  EPGTHLDQNQKLIKYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRNFV 719

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDG 123
              A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG  ++ G
Sbjct: 720  KEAKISQFSGYVSE--HSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRSVGG 777

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY   +++ +   +    D+  +D+ D  + +  EP  +    P +L NG  GI
Sbjct: 778  KDHASARYIYTQLSPITRFLFPKDDDGLLDYLDE-DGQTIEPNWYMPIIPMVLVNGCEGI 836

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP++N ++I      L++       +++E                 +  +E  
Sbjct: 837  GTGWSTFIPNYNPRDIVANIRRLLNG------EMME--------PMNPWYRGFKGTIEKG 882

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAK-----RI 295
                 G        + EV      + +TE+P +         +  + E    +     + 
Sbjct: 883  ASKEAGCSYTVNGVINEV--NETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKD 940

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQ 353
            P ++D R    +   +     +         E +     + T    +   L      + +
Sbjct: 941  PFIKDFRKYGDDATVVFEVLLSEENMMIAKQEGLLKKFKLTTTISTSNMHLFDSAGVIKK 1000

Query: 354  VMPLDGILKEWLAHRREVLFRRS------------------SFRMQAIDRRVEI------ 389
                + IL+E+   R E   RR                    F +  +   + +      
Sbjct: 1001 YDNPEQILEEFFHLRLEYYERRKKVLLENLEFELLKLENKVRFILGVVRGEIIVNNRKRA 1060

Query: 390  -------LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
                    KG          ++A   ++       +    +  +  D +L++ + +L   
Sbjct: 1061 DLFLELHQKGFTPIPKKSKAVVAGATDDKDEAEDSLEVSGVRASDYDYLLSMAIGTLTLE 1120

Query: 443  EEYQIKSELDNLLAEKEKIDS 463
            +  Q+ ++ D L  E + +  
Sbjct: 1121 KVQQLCADHDKLNGEVDNLRK 1141


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 109/154 (70%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  +   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++ R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +D++ V +  
Sbjct: 64  AMARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            +++ + EP V P+ FPNLL NG +GI+ G AT 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 110/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 171/414 (41%), Gaps = 35/414 (8%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            + N+ V+ N+K +  +  ++   + ++ +    R+IP L DG KP  R+I+ +  +  L 
Sbjct: 649  DPNSFVDYNIKQLRSKXFIDRELIHFSNADNL-RSIPSLCDGLKPGQRKILFSCFKRNLK 707

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDG 123
                  +    V E     + HG+QS+  +++ +AQ F       L+   G FG  N  G
Sbjct: 708  SEIKVAQLIGYVAE--HSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQGG 765

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    ++++  ++    D+  + + +  + +  EP  +    P  L NG+SGI
Sbjct: 766  KEHASARYIFTSLSKITRILFPEHDDHVLKYLE-DDNQVVEPEWYMPIIPMCLVNGSSGI 824

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP++N + I E     ++    +     E         G I +  +       
Sbjct: 825  GTGWSTDIPNYNHKGIVEQIRGKLEGRPFT-----ELHPWYKGFQGQIEINPK------- 872

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL-IEKIAELIIAKR----IPLL 298
                GG+ V+ ++ ++EV      I +TE+P         +  I EL+   +    I  +
Sbjct: 873  ----GGYIVKGQYEIDEV---EETIKITELPVGKWTRDYKVVLIQELLSPPKGEPEIEDI 925

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
             +    +     +   P       D + + + + + M+T   +  N     ++ +     
Sbjct: 926  REYHTNNRVHFEVQAIPGRIQQWGD-IEKKLKLSTTMQTTNIVMFN--DKYKLKRYQSTV 982

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
             I++E+ A R +   +R  + +  I R V+IL+  +     +      IRN  K
Sbjct: 983  EIMEEFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKFITLVVNGTLEIRNARK 1036


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 99/124 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 137 TQVA 140
            ++A
Sbjct: 128 AKIA 131


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 122/179 (68%), Gaps = 1/179 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           +KS R V +  GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   QKSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG  
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/151 (45%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I++RA+PD+RDG KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG++GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR+ ++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 109/151 (72%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD+
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++D V F   
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 111/154 (72%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           +RA+PD+RDG KPV RRI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++V
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 67  RMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           + + EP V P+ F NLL NG++GI+ G AT IPS
Sbjct: 127 DTEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 103/128 (80%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++
Sbjct: 61  HGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 149 EDAVDFRD 156
           ++ VDF D
Sbjct: 121 KETVDFVD 128


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 109/143 (76%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR++ AM E G  +   ++KSARIVG+VIGK HPHGD +VYD+LVR+AQPF  
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGD+AAA RYTEARMT++A  +L  +D++ V+F   Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATS 190
            P+K P LL NG+SGIAVGMAT 
Sbjct: 121 LPTKVPALLVNGSSGIAVGMATK 143


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/143 (46%), Positives = 97/143 (67%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              +++ YL Y++S I  RA+PD RDG KP  RRI++AM ++ L  G   +K A+I G+ 
Sbjct: 2   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 61

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
            G  HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD  AA RYTEAR+T  +  
Sbjct: 62  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 121

Query: 143 ILQGVDEDAVDFRDTYNEEDSEP 165
           +++ +D++ V+    YNE   EP
Sbjct: 122 LMEDLDKNTVEMVPNYNETKKEP 144


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 132/195 (67%), Gaps = 7/195 (3%)

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMA
Sbjct: 1   MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 60

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT   I+ SR  I + Y  GRG
Sbjct: 61  TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 120

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
             R+RA W  E+       +V++ +P+QV  +R++E+IA  +  K++P+++D+RDES  +
Sbjct: 121 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 175

Query: 309 --VRIVLFPKNRSLD 321
              R+V+ P++  +D
Sbjct: 176 NPTRLVIVPRSNRVD 190


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/141 (58%), Positives = 111/141 (78%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 169 PSKFPNLLANGTSGIAVGMAT 189
           P+K PNLL NG+SGIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 108/151 (71%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPV RRI+++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD+
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           +VR++Q +  R  LI   GN G++DGD AAA RYTEAR++++A  +LQ +D++ V F   
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           +++ + EP V P+ FPNLL NG +GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|332643306|gb|AEE76827.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1438

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 171/478 (35%), Gaps = 47/478 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KI 726

Query: 69   GAAFKKSARIVGEV-IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 K A++VG V +   + HG+QS+  +++ +AQ +       L+   G FG     G
Sbjct: 727  ARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGG 786

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY   +++ V  ++    D+  +D     + +  EP  +    P +L NG  GI
Sbjct: 787  KDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGI 845

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP++N +EI      L++   +                        +  +E  
Sbjct: 846  GTGWSTFIPNYNPREIVANVRRLLNGESMVPMD--------------PWYRGFKGTIEKT 891

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                GG         EEV      I +TE+P +         +  L      P  +D++ 
Sbjct: 892  ASKEGGCTYTITGLYEEVD--ETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKA 949

Query: 304  ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGIL 361
             + E  V   L     ++        +       T    NM++      + + +  + IL
Sbjct: 950  YNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQIL 1009

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +E+   R E   +R    ++ ++  +  L+      L +     I+    K         
Sbjct: 1010 EEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKK--------- 1060

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL----LAEKEKIDSLLNSGKQQWNQI 475
                   D + +LR +            E            E+ + +L   +   + I
Sbjct: 1061 ------ADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYI 1112


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1239

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 182/500 (36%), Gaps = 41/500 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K++++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKSLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHSSEASKVAQLSGYISE--ASAFHHGEVSLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTPVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IP  +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPPFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
            +  I               R+ +            +EIP+          I+ L     +
Sbjct: 879  DEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLANTDVV 922

Query: 296  PLLEDIRDESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
              + D    +  D+ +++         + +  +     +    T F     +  +     
Sbjct: 923  QRIADYSGANHIDIDLIVRDGALTTWAECEADLALAQRVHINGTVFSPTGTLSPIDS--- 979

Query: 354  VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-IAIIRNEDK 412
               L  +L+     R ++  RR + ++  ++  +  LK       +  +  I  +   D 
Sbjct: 980  --NLAPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLKSTRKFVEHFRQGQIDFLNATDD 1037

Query: 413  PKPVMVSRFSL--TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                   +  L   +   D IL   +    +    +++ ++    A+ E++     +  +
Sbjct: 1038 TLTKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQEDIAKTQAQIEELKR--TTPVR 1095

Query: 471  QWNQIACEIREVKEIFSKST 490
             W     E+ +  + F +  
Sbjct: 1096 MW---LTELDKFDKTFQEYE 1112


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 178/484 (36%), Gaps = 50/484 (10%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N+++   EN+   +    + E  + ++   I+ R++P+  DG KP  R++++ + +    
Sbjct: 135 NTDSRKRENLNQRTYSEFINEELIDFSRLDIR-RSVPNAIDGLKPSQRKVLYTLMQRFEK 193

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                 + A  V       H  G++ + +++VRLAQ F       L+   G FG   I G
Sbjct: 194 SEVRVVQLAGAVAHSCAYHH--GEEPLINTIVRLAQDFVGSNNLNLLQPIGQFGTRLIGG 251

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           +  A+ RY    ++ +   I    D+  + + +  +    EP  F    P +L NG  GI
Sbjct: 252 EDCASARYIYTALSPLVRWIFPRADDSVLSYIE-EDNMRIEPQWFCPIIPMVLVNGAEGI 310

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G AT +  +N +++      +ID        L + +      TG I            
Sbjct: 311 GTGWATKVLCYNPKQVIRNVQRMIDGQP-----LQKMVPFYRNFTGTI-----------K 354

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCI--VVTEIPYQVQKSRLIEKIAE-LIIAKRIPLLED 300
               G F +     +    + +  I   +TE+P  V   R  EK+ + L  +  I   ++
Sbjct: 355 EASEGRFHISGTVTLRPSRKNAHFIQAEITELPVGVWTQRYKEKVLDVLAKSGIISGYKE 414

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVL--SMGRVPQVM 355
           +  E+A    + L PK   +          ++     ++T    +  VL      + +  
Sbjct: 415 LHTENAVRFLLEL-PKGSGIWSSANGGRKHALHKTLKLDTVLGTSSMVLFDENNSLRRFT 473

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL---------------NI 400
            ++ I + +   RR+    R   ++  +D ++   +                      +I
Sbjct: 474 RIEEIFELFFEVRRQKYIERRDHQIGVLDAKLRFYENQCRFVEAVLNKEITIEGKSRTDI 533

Query: 401 DEIIAIIRNEDKPKPVMVSRFS--LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +  +     E  P           L +++   +L++ +  L   E   +    D  + E 
Sbjct: 534 ESTLRQRHFEPNPLKAPNHEDGNELNKSEFSYLLDMPIIRLSNEEVKSLIESRDAKVTEM 593

Query: 459 EKID 462
             + 
Sbjct: 594 NMLK 597


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
 gi|332643305|gb|AEE76826.1| DNA topoisomerase 2 [Arabidopsis thaliana]
          Length = 1473

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 171/478 (35%), Gaps = 47/478 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
                +++    V+    + +  + ++++   +R+IP + DG KP  R+I+    +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFK---KI 726

Query: 69   GAAFKKSARIVGEV-IGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 K A++VG V +   + HG+QS+  +++ +AQ +       L+   G FG     G
Sbjct: 727  ARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGG 786

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              +A+ RY   +++ V  ++    D+  +D     + +  EP  +    P +L NG  GI
Sbjct: 787  KDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGI 845

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T IP++N +EI      L++   +                        +  +E  
Sbjct: 846  GTGWSTFIPNYNPREIVANVRRLLNGESMVPMD--------------PWYRGFKGTIEKT 891

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                GG         EEV      I +TE+P +         +  L      P  +D++ 
Sbjct: 892  ASKEGGCTYTITGLYEEVD--ETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKA 949

Query: 304  ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGIL 361
             + E  V   L     ++        +       T    NM++      + + +  + IL
Sbjct: 950  YNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQIL 1009

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            +E+   R E   +R    ++ ++  +  L+      L +     I+    K         
Sbjct: 1010 EEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKK--------- 1060

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL----LAEKEKIDSLLNSGKQQWNQI 475
                   D + +LR +            E            E+ + +L   +   + I
Sbjct: 1061 ------ADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYI 1112


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 112/148 (75%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 164/442 (37%), Gaps = 42/442 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K +S    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 664  LYTKGTKHISYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 722

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ +       L+  +G FG     G   A
Sbjct: 723  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCA 780

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  ++++ T + +  EP+ +    P +L NG  GI  G 
Sbjct: 781  SARYIFTLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGW 839

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +EI      +I+  E            P  P         E I +   +  
Sbjct: 840  STKIANYNPREITRNLRRMINEEE----------PLPMHPWYKNFTGRMEYISDGRYVHT 889

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------IIAKRIPLLED 300
            G  ++     VE          +TE+P  V      E + E        + A      E 
Sbjct: 890  GNIQILPGERVE----------ITELPIGVWTQNYKENVLEALSNGTEKVKAIVSEYREY 939

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
              D +   V      + R +  +      + +  + +   +N          + +     
Sbjct: 940  HTDTTVRFVISFAPGEFRRIQSED--GGFYRVFKLSSTLSINQMHAFDQNNCLRRYASST 997

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +LKE+   R E   RR  + +  +    +  +    A   +++    +  E+K +  M 
Sbjct: 998  DVLKEFYQLRVEYYGRRKEYLVGQLTALAD--RLSDQARFILEKCEKTLVVENKQRKAMC 1055

Query: 419  SRFSLTENQVDAILNLRLRSLR 440
               +    + D +   + R ++
Sbjct: 1056 DELTKRGYRPDPVKEWQ-RRIK 1076


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 161/440 (36%), Gaps = 38/440 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K VS    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 666  LYTKGTKHVSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 724

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 725  VAQLSGSVAEMSA--YHHGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCA 782

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  + ++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 783  SARYIFTLMSPLTRLIYHPLDDPLLQYQ-VDDGQRIEPIWYIPIIPMVLVNGAEGIGTGW 841

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +E+      +     I+ E+LL          G +   S    V S  +  
Sbjct: 842  STKIANYNPRELISNLRRM-----INGEELLPLHPWYKNFQGSMDYVSDGRYVHSGNIQL 896

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
                                I +TE+P  V      E + E++     K   ++ + R+ 
Sbjct: 897  LP---------------DNRIEITELPVGVWTQNYKENVLEVLSNGTEKVKAVISEYREY 941

Query: 305  SAEDVRIVLFPKNRSLDPDLLME--SIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGI 360
              +     +          L  E      +  + +    N          + +      I
Sbjct: 942  HTDTTVRFVVSFAPGEFERLRSEPGGFHRVLKLSSSLSTNQMHAFDENNCLRRFPSPKDI 1001

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L+E+   R E   RR  + +  +    +  +    A   +++    +  E+K +  M+  
Sbjct: 1002 LQEFYKLRLEYYNRRKDYLVGQL--TAQSDRLSDQARFILEKCEKKLTIENKQRKAMIEE 1059

Query: 421  FSLTENQVDAILNLRLRSLR 440
                  + D +   + R ++
Sbjct: 1060 LIKRGYRPDPVKEWQ-RRIK 1078


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 164/442 (37%), Gaps = 42/442 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K +S    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 664  LYTKGTKHISYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 722

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ +       L+  +G FG     G   A
Sbjct: 723  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCA 780

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  ++++ T + +  EP+ +    P +L NG  GI  G 
Sbjct: 781  SARYIFTLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGW 839

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +EI      +I+  E            P  P         E I +   +  
Sbjct: 840  STKIANYNPREITRNLRRMINEEE----------PLPMHPWYKNFTGRMEYISDGRYVHT 889

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-------IIAKRIPLLED 300
            G  ++     VE          +TE+P  V      E + E        + A      E 
Sbjct: 890  GNIQILPGERVE----------ITELPIGVWTQNYKENVLEALSNGTEKVKAIVSEYREY 939

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLD 358
              D +   V      + R +  +      + +  + +   +N          + +     
Sbjct: 940  HTDTTVRFVISFAPGEFRRIQSED--GGFYRVFKLSSTLSINQMHAFDQNNCLRRYASST 997

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +LKE+   R E   RR  + +  +    +  +    A   +++    +  E+K +  M 
Sbjct: 998  DVLKEFYQLRVEYYGRRKEYLVGQLTALAD--RLSDQARFILEKCEKTLVVENKQRKAMC 1055

Query: 419  SRFSLTENQVDAILNLRLRSLR 440
               +    + D +   + R ++
Sbjct: 1056 DELTKRGYRPDPVKEWQ-RRIK 1076


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 178/456 (39%), Gaps = 43/456 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++   VS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 741

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+ S+  +++ LAQ +       L+   G FG     G  +A
Sbjct: 742  VAQLAGAVGEMSA--YHHGEASLMATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 799

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V + +   VDE  + F    N+   EP  +    P +L NG  GI    
Sbjct: 800  SPRYIFTQLNPVTKALFPSVDESVLRFLYEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 858

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P++N +EI E    +I   +               P       + E + E+  +  
Sbjct: 859  STKVPNYNPREIVENIRLMIRGEQ----------PRHMVPWFKNFRGTIEQMDENRFVCS 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---LLEDIRDE 304
            G   +     +E          +TE+P +       E + E ++        ++ D ++ 
Sbjct: 909  GEIAIIGEGTIE----------ITELPIRTWTQTYKESVLEPMLDGSDKQPAMITDFKEY 958

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     L            ME +  +  ++T       VL  +MG + +   ++ I  
Sbjct: 959  HTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFNTVEEICT 1018

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++   R++    R +F+M  +  R +  +    A   + +I   I  E+K K V+V +  
Sbjct: 1019 DFFETRKKKYIERKAFQMGML--RAQSQRLSNQARFILAKIKGEILIENKRKLVIVEQLV 1076

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                  D +        +K +E Q + EL+      
Sbjct: 1077 KMGFDPDPV--------KKWKEAQKRKELEATGEVI 1104


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 116/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 151/405 (37%), Gaps = 34/405 (8%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
            V+ +  ++     + +  + ++   +  R+IP + DGFKP  R+++    +  L      
Sbjct: 679  VDHSKASLRYLDFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDTKV 737

Query: 73   KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAA 128
             +    V E     + HG+QS+   +V +AQ F       L+   G FG     G  AA+
Sbjct: 738  AQFVGYVSE--HSAYHHGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAAS 795

Query: 129  YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
             RY   R+++    I    D+D +++  T   +  EP  +    P +L NG  GI  G +
Sbjct: 796  GRYIYTRLSKYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWS 854

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            T++ S++ +EI     ALI        +L +        TG +    +           G
Sbjct: 855  TNVLSYDPREIIHLLRALIRGV-----ELHDIHPWYRGFTGSVERNDKNG-----YDFVG 904

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
              R+               + +TE+P +       + +  L+++  +         +   
Sbjct: 905  KVRM---------ASDDRTVDITELPVKTWTQNYKD-LDTLVVSVILLGRY----HTEHS 950

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR--VPQVMPLDGILKEWLA 366
            V      +N +    +    +     + + F     VL      + +   +  I+K++  
Sbjct: 951  VHFKCTLQNEAAKSVVDSLGLEKAFKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFAD 1010

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
             R ++  +R    +  + + + IL       + +     + + + 
Sbjct: 1011 LRLDMYVKRKDSLIAKLTKEILILSNKCRFVMMVINGEIVFQKKK 1055


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G+SGIAVGMAT+IP HN+ E+    LA 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 102/128 (79%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  +
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120

Query: 148 DEDAVDFR 155
           +++ VDF 
Sbjct: 121 EKETVDFV 128


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 180/458 (39%), Gaps = 36/458 (7%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +L   + +  L YA+ TI+ RA+ +  DG KPV R +++ + +   D   +F K A +
Sbjct: 2   QRTLSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL 58

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
              V    + HG+ S  D+L  +A  +    P++ G+GNFG+     +A+ RY  A++  
Sbjct: 59  GSSVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHD 118

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
             +L  + +           + E   P  +    P +L NG  GIA G A +I  H+ + 
Sbjct: 119 NFDLYFKDIHLSPEHK----DLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEW 174

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258
           + +A L  +   EIS       +  P+F  G I            +L    +       +
Sbjct: 175 VKKAVLEYLAGKEISE----PVVKFPEF-YGKIE-----------KLEHNKYAQIGTVEI 218

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
             +       VVTEIP     ++ I ++ +L+   +   +    DE++E  +  +  K  
Sbjct: 219 SGL-----TAVVTEIPTGFDHAKYIIELDKLVEKGK---ISSYVDETSETFQFRVRFKRG 270

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGR-VPQVMPLDGILKEWLAHRREVLFRRSS 377
                +  ES+     +++ F  N+NV+     +     +  ++K ++  R   L +R  
Sbjct: 271 ---AKMTEESVIKTLKLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQ 327

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNLRL 436
              +  ++R  +    +     +     I+  + + +    +         V  +LN+ +
Sbjct: 328 DSTERTEKRASLAIAKVEFIKRVVSGTIILFGKKRAEVAAELKADEAFSEHVTELLNMSV 387

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             +   E  +++ +      E           +   + 
Sbjct: 388 DKMTDDEIARLEKDATVAQKELSYWQKTTAQKEFIKDI 425


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 117/165 (70%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           V RRI++AM   G      F+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
              GN G+ID D  AA RYTEA+++ +AE +L+ ++++ V F   Y++   EP+V PS+F
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
           PNLL NG++GI+ G AT IP HN+ E+ +A L  IDNP+I++ +L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 165/442 (37%), Gaps = 47/442 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  KA+S +  +    + ++ S    R+IP + DG KP  R+++    +        
Sbjct: 688  LYTKTTKAISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVMFTCFKRNDKREVK 746

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+QS+  +++ LAQ F       L+   G FG     G  +A
Sbjct: 747  VAQLAGSVAEMSA--YHHGEQSLCSTIINLAQNFVGSNNINLLYPGGQFGTRLTGGKDSA 804

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +  LI   +D+  ++++   + +  EPV +    P LL NG  GI  G 
Sbjct: 805  SPRYIFTMLSTLTRLIFHPLDDPLLEYQY-EDNQRIEPVWYLPIIPMLLVNGAEGIGTGW 863

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP+HN +++      +                        +  E  + +   Y+  R
Sbjct: 864  STKIPNHNPRDVIANIRRM------------------------LNGEEPKVLNPWYKNFR 899

Query: 248  GGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLED 300
            G            VG         I ++E+P         E + E ++    K+  ++ D
Sbjct: 900  GLVESVGHQKYLTVGNVALLDGQKIEISELPIGTWTQTYKENVLEPLLHGSDKQKAVISD 959

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLME-----SIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ + +     +          L  E      +F L+   +   +N        + +  
Sbjct: 960  YKEYNTDTTVRFVVSFLPGEYAKLYAEEGGFHRLFKLTSSISTSSMNAFD-DKNYLKRYD 1018

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              + I +++   R E   +R  + +  +    + +     A   +++    +  E+K + 
Sbjct: 1019 HANSIFQDFYTIRLEYYGKRREYLLGMLQAEADSMSD--KARFIMEKCSGQLTVENKKRK 1076

Query: 416  VMVSRFSLTENQVDAILNLRLR 437
             ++        + D I   + R
Sbjct: 1077 ALIEEMIKRGYRPDPIKEWKRR 1098


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
            +V GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++
Sbjct: 8   RDVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 67

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198
           ++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT IP HN+ E
Sbjct: 68  ISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 127

Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           I +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRG   VR 
Sbjct: 128 IADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIVRF 183


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 164/440 (37%), Gaps = 47/440 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  KA++ +  +    + ++ S    R+IP + DG KP  R+++    +        
Sbjct: 687  LYTKTTKAITYKEFINLELVLFSNSDNI-RSIPCMVDGLKPGQRKVMFTCFKRNDKREVK 745

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    H  G+QS+  ++V LAQ +       L+   G FG     G  +A
Sbjct: 746  VAQLAGSVAEMSAYHH--GEQSLCGTIVNLAQNYVGSNNINLLVPSGQFGTRLAGGKDSA 803

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +  LI   +D+  ++++   + +  EP+ +    P +L NGT GI  G 
Sbjct: 804  SPRYIFTMLSPLTRLIFHPLDDPLLEYQY-DDNQKIEPLWYLPIIPMVLVNGTEGIGTGW 862

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP+HN ++I      +                        +  E  + +   Y+  R
Sbjct: 863  STKIPNHNPRDIISNLRRM------------------------LNGEEPKIMHPWYKNFR 898

Query: 248  GGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAE-LII--AKRIPLLED 300
            G            VG      +  I ++E+P         E   E L     K+  ++ +
Sbjct: 899  GEIESVGHQRYLTVGNVSLLDNQKIEISELPIGTWTQTYKENTLEPLANGSDKQKAIISE 958

Query: 301  IRDESAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ + +     +        +R    +     +F L+   +   +N        + +  
Sbjct: 959  YKEYNTDTTVRFVISFLPGEYDRIYAEEGGFHRVFKLTSSISTSSMNAFD-DKSYLKRYD 1017

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              + I  E+   R E   +R ++    +    E  +    A   +++    +  E+K + 
Sbjct: 1018 HANDIFHEYYKLRIEYYGKRKAYLEGMLQ--AEADRLTDQARFIMEKCDRTLVVENKKRK 1075

Query: 416  VMVSRFSLTENQVDAILNLR 435
            VM+        + D +   +
Sbjct: 1076 VMIDELIKRGYRADPVKEWK 1095


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/498 (16%), Positives = 180/498 (36%), Gaps = 69/498 (13%)

Query: 11   TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            T+ E +  +++    ++   + ++ +    R++P++ DG KP  R++++A  +  L    
Sbjct: 687  TVDERDGNSITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNLKDEI 745

Query: 71   AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSA 126
               + A    E     + HG+ S++ +++ +AQ F       L++  G FG   + G+ A
Sbjct: 746  KVAQLAGYCAEHTA--YHHGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDA 803

Query: 127  AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
            A+ RY    ++ ++ L+    D+  +++++  + +  EP  F    P LL NG  GI  G
Sbjct: 804  ASPRYIFTHLSPLSRLLFPVDDDMLLNYKE-EDGQMIEPEYFCPIIPLLLVNGCQGIGTG 862

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             +T IP HN  ++     A +D  +                 GGI V+S+        + 
Sbjct: 863  WSTFIPQHNPLDVLNYIRAKLDETKKPA-----IRPWVKGFEGGITVDSKRGD----YVT 913

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
             G              + +  +V++E+P  V  +     +  ++    I         + 
Sbjct: 914  EGIITP----------QKNSSVVISELPVGVWTNDYKATLVAMLKKAEIKSFSQNHTTTT 963

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                + +     +      M   F L    +   ++    +  ++ +    + I   +  
Sbjct: 964  VSFNVKVNAAKLNRLLKGDMLKTFKLRKALSTRNMHAF-TTDMKIARYNSPEEIADAFFP 1022

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAY-----LNID-------------------- 401
             R ++   R S     ++    +++             ID                    
Sbjct: 1023 VRLDLYADRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEF 1082

Query: 402  ----EIIAIIRNEDKPKPVMVSRFSLTE------------NQVDAILNLRLRSLRKLEEY 445
                E+ AI  N +  +    S   + E             + D +LNL L SL   +  
Sbjct: 1083 SKQSELDAIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKID 1142

Query: 446  QIKSELDNLLAEKEKIDS 463
             +  +      + E+I +
Sbjct: 1143 ALNDDAAKTDTKLEQIKN 1160


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           ++ SAR VG+V+GKL PHGD   Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   YRISARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT 
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           IP HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +  I + Y  GRGG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 178/456 (39%), Gaps = 43/456 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L +++   VS +  + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 683  LYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 741

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+ S+  +++ LAQ +       L+   G FG     G  +A
Sbjct: 742  VAQLAGAVGEMSA--YHHGEASLMATIINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSA 799

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V + +   VDE  + F    N+   EP  +    P +L NG  GI    
Sbjct: 800  SPRYIFTQLNPVTKALFPSVDESVLRFLYEENQRI-EPEWYCPIIPTVLVNGAEGIGTAW 858

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P++N +EI E    +I   +               P       + E + E+  +  
Sbjct: 859  STKVPNYNPREIVENIRLMIRGEQ----------PRHMVPWFKNFRGTIEQMDENRFVCS 908

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP---LLEDIRDE 304
            G   +     +E          +TE+P +       E + E ++        ++ D ++ 
Sbjct: 909  GEIAIIGEGTIE----------ITELPIRTWTQTYKESVLEPMLDGSDKQPAMITDFKEY 958

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
              +     L            ME +  +  ++T       VL  +MG + +   ++ I  
Sbjct: 959  HTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFNTVEEICT 1018

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
            ++   R++    R +F+M  +  R +  +    A   + +I   I  E+K K V+V +  
Sbjct: 1019 DFFETRKKKYIERKAFQMGML--RAQSQRLSNQARFILAKIKGEILIENKRKLVIVEQLV 1076

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                  D +        +K +E Q + EL+      
Sbjct: 1077 KMGFDPDPV--------KKWKEAQKRKELEATGEVI 1104


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/145 (55%), Positives = 113/145 (77%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQEICE 201
            NG+SGIAVGMAT+IP HN+ E+  
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEVIN 145


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
            [Crithidia fasciculata]
          Length = 1239

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 180/473 (38%), Gaps = 38/473 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MSKANAFQGEVDIDRSKKLLTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M +      A   + +  + EV      HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLKRHSSEAAKVAQLSGYISEVSS--FHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLDYID-EEGTMVEPNHYVPILPLLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPE 878

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
            +       +  G +              +  + V+E+P+          I+ L  +  + 
Sbjct: 879  KE-----YIAVGKYTAH----------RNGRLHVSELPWMTSIEAFRSHISSLASSDVVQ 923

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ +++   + +   +         +D+     + +N         + P
Sbjct: 924  RIADYSGANHIDIDLIVREGSMTTWAE-------CETDLALSQRIYINGTVFSPDGTLSP 976

Query: 357  LDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI-IAIIRNED 411
            +D     +L+     R ++  RR + ++  ++  +  L+       +  +  I  +   D
Sbjct: 977  IDADLSPVLQWHYDRRLDLYKRRRTRQIGLLEMDLARLQSTRKFVEHFRQGHIDFLAATD 1036

Query: 412  KPKPVMVSRFSL--TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                    +  L   ++  D IL   +    K    ++++++         + 
Sbjct: 1037 DTLTKTCVKLGLVRVDDGYDYILKKPITFYTKTSTEKLQADIKKTQDSIAVLK 1089


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY++LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/120 (60%), Positives = 95/120 (79%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 170/441 (38%), Gaps = 40/441 (9%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  K+++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 550 LYTKGTKSITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 608

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
             + +  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 609 VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCA 666

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           + RY    M+ +  LI   +D+  +D++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 667 SARYIFTIMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGW 725

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T I ++N +EI +    +I+  E S       ++ P +         +  +     +  
Sbjct: 726 STKISNYNPREIMKNLRKMINGQEPS-------VMHPWY---------KNFLGRMEYVSD 769

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
           G +       +    R    + ++E+P  V      E + E +     K   ++ + R+ 
Sbjct: 770 GRYIQTGNIQILSGNR----LEISELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREY 825

Query: 305 SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
             +     +         R    +     +F L+   +   ++        + +      
Sbjct: 826 HTDTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFD-QNNCLRRFPTAID 884

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 885 ILKEYYKLRREYYARRRDFLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKAMCD 942

Query: 420 RFSLTENQVDAILNLRLRSLR 440
                  + D +   + R ++
Sbjct: 943 ELLKRGYRPDPVKEWQ-RRIK 962


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/120 (60%), Positives = 96/120 (80%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 69/139 (49%), Positives = 105/139 (75%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 1   MQDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RY
Sbjct: 61  HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRY 120

Query: 132 TEARMTQVAELILQGVDED 150
           TEARM+++A  +L+ +++ 
Sbjct: 121 TEARMSKIALEMLRDINKK 139


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 110/143 (76%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR++ AM+  G D+   ++KSARIVG+VIGK HPHGD +VY +LVR+AQPF  R
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           YPL+ GQGNFG+IDGDS AA RYTEARMTQ+A  +L  +D++ VD++  Y+  +  P V 
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 169 PSKFPNLLANGTSGIAVGMATSI 191
           P+K P LL NG+SGIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 176/458 (38%), Gaps = 34/458 (7%)

Query: 10   NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             +LV++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  M     
Sbjct: 686  ESLVDDGKTELSYKEFIDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNMDESTE 744

Query: 70   AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDS 125
                + A  V     + + HG++S+  +++R+ Q F      PL+   G FG  +  G+ 
Sbjct: 745  MKVSQLAGAVAH--RQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGND 802

Query: 126  AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
            AA+ RY    +     L+    D+D  + R        EP       P +L NGT GI  
Sbjct: 803  AASARYIFTSLASTTRLLFPHADDDLYEKR-IEEGLVVEPRWLCPIIPLILVNGTEGIGT 861

Query: 186  GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
            G +T I + N  ++ +     ID    S+E   E     +   G I     E++     +
Sbjct: 862  GWSTKIVNRNAIDVIDGIRRKID----SVEGEHEIQPYYEDYRGKI-----EAVTSKKFI 912

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              G   +      E     ++ I ++E+P ++  S+  EK+++++    I    +   E 
Sbjct: 913  TTGKIHLS---RPERKNASTFSIEISELPIEIWTSKYKEKLSKIVENLPIVEFSERHTEK 969

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEW 364
              + R+ +  K            +     + +    N  +     + +    +  I  E+
Sbjct: 970  RVNFRLTVDRKKAGRFLQKTNSELLNFFKLRSSITENRVLFDKNGLLKEYKSISEIASEF 1029

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI------------DEIIAII-RNED 411
               RR++  +R   +    + +++ +   +     +            D++ + +     
Sbjct: 1030 FDVRRDLYEKRLKAQKDECEAKLKYVDNQIKFIDLVTNGTIDLRSMGRDQLESSLEEYGL 1089

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
            +  P+     +  ++    +L + L  L   E  ++  
Sbjct: 1090 ESDPLSSKTHNAKKSDYSYLLEMPLSRLTSDEMNRLTE 1127


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 161/438 (36%), Gaps = 39/438 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K +S +  +    + ++ S    R+IP + DG KP  R++++   +        
Sbjct: 664  LYTKTTKEISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVLYTCFKRDDKREVK 722

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ +       L+   G FG     G  +A
Sbjct: 723  VAQLAGSVAE--KSAYHHGEMSLCSTIINLAQNYVGSNNINLLYPGGQFGTRLTGGKDSA 780

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    ++ +   I   +D+  ++++   + +  EPV +    P LL NG  GI  G 
Sbjct: 781  SPRYIFTMLSALTRHIFHPLDDPLLEYQY-EDNQRIEPVWYLPIIPMLLINGADGIGTGW 839

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            AT IP+HN +++      +++  E               P         ES+     L  
Sbjct: 840  ATKIPNHNPRDVIANIRRMLNGDE----------PKMLTPWYKNFRGVIESVGHQKYLTA 889

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   +               I ++E+P         E + E ++    K   ++ D ++ 
Sbjct: 890  GTVGLL----------DGKKIEISELPIGTWTQTYKENVLEPLLHGSDKAKAVIADYKEY 939

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            + +     +         +    +     +F L+   +   +N        + +    + 
Sbjct: 940  NTDTTVRFVISFLPGEYEKLYAEEGGFHRLFKLTSSISTASMNAFD-DKNYLKRYAHANE 998

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            I  E+   R +   +R ++ +  +    + L     A   +++    +  E+K +  ++ 
Sbjct: 999  IFMEFYTVRLDFYGKRRAYLLGMLQAEADSLSD--KARFIMEKCNGTLVVENKKRKALID 1056

Query: 420  RFSLTENQVDAILNLRLR 437
                   + D I   + R
Sbjct: 1057 ELIKRGYRADPIQEWKRR 1074


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 166/440 (37%), Gaps = 38/440 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K VS    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 682  LYTKGTKQVSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 740

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ +       L+  +G FG     G   A
Sbjct: 741  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCA 798

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  + ++ T + +  EP+ +    P +L NG  GI  G 
Sbjct: 799  SARYIFTLMSPLTRLIYHPLDDPLLQYQ-TDDGQRIEPLWYIPIIPMVLVNGAEGIGTGW 857

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +E+      +I+      E LL +      P       + + + +   +  
Sbjct: 858  STKIANYNPRELINNLRRMINGE----EPLLMH------PWYKNFTGNMDYVNDGRYVHS 907

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA--KRIPLLEDIRDES 305
            G  ++ +             I +TE+P  V      E + E +    +++  +     E 
Sbjct: 908  GNIQMLS----------DNRIEITELPIGVWTQTYKENVLEALSNGTEKVKAIVSEYREF 957

Query: 306  AEDVRIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGI 360
              D  +         + + L         +  + +    N          + +      I
Sbjct: 958  HTDTTVRFVVSFNPGEFERLRSENGGFHRVFKLSSSISTNQMHAFDDSNCLRRFSSPKDI 1017

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L E+   R E   RR  + +  +  + +  +    A   +++    +  E+K + VM+  
Sbjct: 1018 LLEFYKLRLEYYNRRKDYLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKVMIDE 1075

Query: 421  FSLTENQVDAILNLRLRSLR 440
                  + D +   + R ++
Sbjct: 1076 LIKRGYRPDPVKEWQ-RRIK 1094


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 164/441 (37%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K VS    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYTKGTKHVSYSDFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    H  G+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSAYHH--GEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  + ++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 782  SARYIFTLMSPLTRLIYHPLDDPLLQYQ-VDDGQRIEPLWYIPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +++      +     I+ E+ L         TG +             +  
Sbjct: 841  STKIANYNPRDMITNLRRM-----INNEEPLPLHPWYKNFTGTME-----------YVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    I +TE+P  V      E + E++     K   ++ D R+ 
Sbjct: 885  GRYVHSGNVQILPDNR----IEITELPIGVWTQNYKENVLEVLSNGTEKVKAIISDYREY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    +     +  LS   +   ++        + +      
Sbjct: 941  HTDTTVRFVITFAPGEFERLRSEEGGFHRVLKLSSSISTNQMHAFD-ENNCLRRFPTPKD 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            IL E+   R E   RR  + +  +  + +  +    A   +++    +  E+K + +M+ 
Sbjct: 1000 ILVEFYKLRLEYYNRRKDYLVGQLTAQAD--RLSDQARFILEKCEKKLVIENKQRKMMID 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELIKRGYRPDPVKEWQ-RRIK 1077


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 110/150 (73%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA   I+ERA+PD+RDG KPV RRI++ M  +GL +  +++KSA  VGEVIGK HPHGD 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDL 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RYTEAR++    L+L+ ++++ V
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 153 DFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           +F + +++ + EP + PS  PNLL NG++G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 166/436 (38%), Gaps = 36/436 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ K+VS    +    + ++ +    R+IP L DG KP  R+++    +        
Sbjct: 689  LYAKDTKSVSYTDFVNLELVLFSNADNI-RSIPCLVDGLKPGQRKVMFTCFKRNDKREVK 747

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G  +A
Sbjct: 748  VAQLAGSVAEMSA--YHHGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSA 805

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +M+ +  +I    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 806  SPRYIFTKMSPLTRMIFNPSDDYLLKHEF-EDNQKIEPVWYIPIIPMVLVNGADGIGTGW 864

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +E+ +   A++D  E +       +       G I+               
Sbjct: 865  MTKIPNYNPRELVKNIRAMLDQEEPTNM-----VPWYKNFIGSIVDCGDN---------- 909

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDES 305
               R  A   +  +G     + +TE+P         E + E  L  ++++  +     E 
Sbjct: 910  ---RYVASGEIAIIGDNR--VEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEY 964

Query: 306  AEDVRIVLFPKNRSLDPDLLMES--IFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
              D  +           + L     +     +++    +   +   +G + +   +  IL
Sbjct: 965  NTDTTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDIL 1024

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            K++   R  +  +R  +    +    E  K    A   +++    +  E+K + V++   
Sbjct: 1025 KDYYKLRLTMYQKRKDYLEGMLK--AEASKLSNQARFIMEKCDRTLVVENKKRKVIIDEL 1082

Query: 422  SLTENQVDAILNLRLR 437
                 + D + + + R
Sbjct: 1083 IKRGYEPDPVKDWKQR 1098


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/130 (56%), Positives = 102/130 (78%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 143 ILQGVDEDAV 152
           ++  ++++ V
Sbjct: 121 LMADLEKETV 130


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 166/441 (37%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K ++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYAKGTKHITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++   + +  EP  +    P +L NG  GI  G 
Sbjct: 782  SARYIFTLMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPQWYLPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I +HN +EI      +I+  E         ++ P +      +E          +  
Sbjct: 841  STKIANHNPREIMNNLRKMINGEE-------PKVMHPWYKNFTGRME---------YVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    + +TE+P  V      E + E +     K   ++ D R+ 
Sbjct: 885  GRYVQTGNIQILPGNR----VEITELPVGVWTQNYKENVLEPLANGTEKVKAIVSDYREY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    +     +F L+   +   ++        + +      
Sbjct: 941  HTDTTVRFVITFATGEFERIQAEEGGFHRVFKLTTTLSTNQMHAFD-QNNCLRRFPTAVD 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1000 ILKEFYQLRREYYARRKDFLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKAMCD 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELLKRGYRPDPVKEWQ-RRIK 1077


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 166/436 (38%), Gaps = 36/436 (8%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ K+VS    +    + ++ +    R+IP L DG KP  R+++    +        
Sbjct: 689  LYAKDTKSVSYTDFVNLELVLFSNADNI-RSIPCLVDGLKPGQRKVMFTCFKRNDKREVK 747

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G  +A
Sbjct: 748  VAQLAGSVAEMSA--YHHGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSA 805

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +M+ +  +I    D+  +      + +  EPV +    P +L NG  GI  G 
Sbjct: 806  SPRYIFTKMSPLTRMIFNPSDDYLLKHEF-EDNQKIEPVWYIPIIPMVLVNGADGIGTGW 864

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             T IP++N +E+ +   A++D  E +       +       G I+               
Sbjct: 865  MTKIPNYNPRELVKNIRAMLDQEEPTNM-----VPWYKNFIGSIVDCGDN---------- 909

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLLEDIRDES 305
               R  A   +  +G     + +TE+P         E + E  L  ++++  +     E 
Sbjct: 910  ---RYVASGEIAIIGDNR--VEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEY 964

Query: 306  AEDVRIVLFPKNRSLDPDLLMES--IFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGIL 361
              D  +           + L     +     +++    +   +   +G + +   +  IL
Sbjct: 965  NTDTTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDIL 1024

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
            K++   R  +  +R  +    +    E  K    A   +++    +  E+K + V++   
Sbjct: 1025 KDYYKLRLTMYQKRKDYLEGMLK--AEASKLSNQARFIMEKCDRTLVVENKKRKVIIDEL 1082

Query: 422  SLTENQVDAILNLRLR 437
                 + D + + + R
Sbjct: 1083 IKRGYEPDPVKDWKQR 1098


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 168/438 (38%), Gaps = 34/438 (7%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +++   VS +  + +  + ++     ER+IP L DG KP  R+++    +        
Sbjct: 184 LYDKDTHVVSFKDFVNKELVLFSNCD-NERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 242

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
             + A  VGE+    + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 243 VAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSA 300

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           + RY   ++  V + +   +DE+ + F    N++  EP  +    P +L NGT GI    
Sbjct: 301 SPRYIFTQLNPVTKALFPSIDENVLRFLYEENQKI-EPEWYCPVIPTVLVNGTEGIGTAW 359

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T +P +N +EI +   ALID  E         I       G I            +L  
Sbjct: 360 STKVPCYNPREIVDNMRALIDGKEPKTFGKKNSIPWYKHFRGTIE-----------QLDD 408

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKRIPLLEDIR 302
             F       +      +  I +TE+P +       E  A L+       K+  ++ D +
Sbjct: 409 QRFICNGEVAI----INNETIEITELPIRTWTQTYKE--AVLVPMMDGNDKQPAVITDFK 462

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGI 360
           +   +     +   +         E +  +  +++       VL      + +   +  I
Sbjct: 463 EYHTDTTVKFVVKMSSDKLRASKEEGLHKVFKLQSVINTTSMVLFDPFGYLRRFENVTDI 522

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            KE+   R++    R SF+   +  + E L     A   + +I   I  E+K K  +V +
Sbjct: 523 CKEFFEIRKKKYIERKSFQEGLLRAQSERLSN--QARFILAKIKGEILIENKRKATIVEQ 580

Query: 421 FSLTENQVDAILNLRLRS 438
                 + D +   +   
Sbjct: 581 LIKMSFKPDPVKKWKEER 598


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 179/463 (38%), Gaps = 44/463 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ + V+ +  + +  + ++     ER+IP L DGFKP  R+++ A  +        
Sbjct: 718  LYNKDTRTVTFKDFVNQELVLFSNCD-NERSIPCLVDGFKPGQRKVLFACFKRADKREVK 776

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+ S+  +++ LAQ +       ++   G FG     G  +A
Sbjct: 777  VAQLAGAVAELSA--YHHGEVSLMGTIINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSA 834

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +++ V   +    D++ + F    N+   EP  +    P +L NG +GI  G 
Sbjct: 835  SARYIFTQLSPVTRSVFPANDDNVLRFLYEENQRI-EPEWYCPIIPMVLVNGAAGIGTGW 893

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T+IP++N +E+ +    L                        I  E+++++   Y+  R
Sbjct: 894  STNIPNYNPRELVKNVKKL------------------------IAGEAQKALDPWYKNFR 929

Query: 248  GGFRV----RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LII--AKRIPLLED 300
            G        R     E        + +TE+P +       EK+ E L+    K+ P++ D
Sbjct: 930  GKIIQIDPSRYACYGEVAVLDDNTVEITELPIKTWTQEYKEKVLESLMESTDKKTPIVSD 989

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
             ++   +     +   +     +L     +  +  ++        VL      +      
Sbjct: 990  YKEYHTDTTVKFVVKLSPGKLAELERSGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTP 1049

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            + I +E+   R+E   +R  + +  +  + + L     A   + +I   I  E+K K  +
Sbjct: 1050 EEITQEFFDVRKEKYIQRKEYMVGVLQAQSKRLTN--QARFILAKINNEIIMENKKKASI 1107

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            V      +   D +   +     K      + ELD      E+
Sbjct: 1108 VETLIKMKFDPDPVKKWKEEQKLKELRESGEVELDEEDQVDEE 1150


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 179/463 (38%), Gaps = 44/463 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  ++ + V+ +  + +  + ++     ER+IP L DGFKP  R+++ A  +        
Sbjct: 718  LYNKDTRTVTFKDFVNQELVLFSNCD-NERSIPCLVDGFKPGQRKVLFACFKRADKREVK 776

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+ S+  +++ LAQ +       ++   G FG     G  +A
Sbjct: 777  VAQLAGAVAELSA--YHHGEVSLMGTIINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSA 834

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   +++ V   +    D++ + F    N+   EP  +    P +L NG +GI  G 
Sbjct: 835  SARYIFTQLSPVTRSVFPANDDNVLRFLYEENQRI-EPEWYCPIIPMVLVNGAAGIGTGW 893

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T+IP++N +E+ +    L                        I  E+++++   Y+  R
Sbjct: 894  STNIPNYNPRELVKNVKKL------------------------IAGEAQKALDPWYKNFR 929

Query: 248  GGFRV----RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE-LII--AKRIPLLED 300
            G        R     E        + +TE+P +       EK+ E L+    K+ P++ D
Sbjct: 930  GKIIQIDPSRYACYGEVAVLDDNTVEITELPIKTWTQEYKEKVLESLMESTDKKTPIVSD 989

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLME-SIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
             ++   +     +   +     +L     +  +  ++        VL      +      
Sbjct: 990  YKEYHTDTTVKFVVKLSPGKLAELERSGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTP 1049

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
            + I +E+   R+E   +R  + +  +  + + L     A   + +I   I  E+K K  +
Sbjct: 1050 EEITQEFFDVRKEKYIQRKEYMVGVLQAQSKRLTN--QARFILAKINNEIIMENKKKASI 1107

Query: 418  VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
            V      +   D +   +     K      + ELD      E+
Sbjct: 1108 VETLIKMKFDPDPVKKWKEEQKLKELRESGEVELDEEDQVDEE 1150


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 110/142 (77%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPVHRRI++AM+++G+     +KKSARIVGEVIGK HPHGD +V
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+S+VR+AQ F  RY L+ G GNFG++DGDSAAA RYTEARM+++A  IL+ + +D +D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 155 RDTYNEEDSEPVVFPSKFPNLL 176
           +D  +    EP V PS+FP +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 112/142 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 177 ANGTSGIAVGMATSIPSHNVQE 198
            NG+SGIAVGMAT+IP HN+ E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 170/484 (35%), Gaps = 62/484 (12%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             VS    + +  + ++ +    R+IP   DG KP  R++++A  +  L       +    
Sbjct: 687  NVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKLKSEIKVAQLTGY 745

Query: 79   VGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYTEA 134
              E     + HG+ S+  +++ +AQ F       L+   G FG   + G  AA+ RY   
Sbjct: 746  CAEHTA--YHHGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYT 803

Query: 135  RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
             +  +A  +    D+  + + +  + +  EP  +    P L+ NG  GI  G +T IP H
Sbjct: 804  YLAPIARSLFPEADDTLLSYLE-DDGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPH 862

Query: 195  NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            +  ++ E  LA +D      E+L +         G I  +             G      
Sbjct: 863  SANDVLEYILAKLDG----AERLPKIHPFARGFQGRIEPDPNG---------NGYVSFGR 909

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              C+ +       I++ E+P +   ++    + ++     +    +  + S     + L 
Sbjct: 910  SSCISD-----RTILIDELPLRCWTNKYKGILLKMRDRGEVTSFVENHNTSKVSFLVTLK 964

Query: 315  PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                +      +E  F L        ++      G++ +    + I++ +   R ++   
Sbjct: 965  SAQLARMTQAGLEKSFKLKTNLQTTNMHAFNK-DGQICKFDTAESIVEAFFPVRMQLYQD 1023

Query: 375  RSSFRMQAIDRRVEILK---GLLIAYLNID-------------------------EIIAI 406
            R +     ++    IL+   G + A  + D                           +  
Sbjct: 1024 RIALLQSLLNYEASILRNKAGFIKAVTSGDIDLTSGRRSKQETSKKLKEHGFLDSVELNA 1083

Query: 407  IRNEDK-------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            I+NE+                 +L     D +LN+ L SL   +  ++         E E
Sbjct: 1084 IKNENVLWKRRQFASEKGEGGSNLEPMNFDYLLNMPLSSLTSEKIRELGEHAATKDKELE 1143

Query: 460  KIDS 463
            ++ S
Sbjct: 1144 EMKS 1147


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 164/441 (37%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K +S    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYTKGTKHISYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    H  G+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSAYHH--GEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++   + +  EP  +    P +L NG  GI  G 
Sbjct: 782  SARYIFTLMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPQWYLPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I +HN +EI      +I+  E         ++ P +      +E          +  
Sbjct: 841  STKISNHNPREIMSNLRKMINGEE-------PKVMHPWYKNFTGRME---------YVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R      +TE+P  V      E + E +     K   ++ D R+ 
Sbjct: 885  GRYVQTGNIQILPGNR----AEITELPVGVWTQNYKENVLEPLANGTEKVKAIISDYREY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    D     +F L+   +   ++        + +      
Sbjct: 941  HTDTTVRFVISFAPGEFERIQAEDGGFYRVFKLTTTLSTNQMHAFD-HNNCLRRFPTAID 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1000 ILKEFYELRREYYARRKDFLVGQLTAQAD--RLSDQARFIVEKCDKKLVVENKQRKAMCD 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELLKRGYRPDPVKEWQ-RRIK 1077


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 157/410 (38%), Gaps = 30/410 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+     +     + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 641  NHDLYVDHTKSELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLK 699

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  +    + E     + HGD S+  +++ +AQ F       L+  +G FG+  + G
Sbjct: 700  QEIKVVQLGGYIAE--HSAYHHGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGG 757

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    + ++   I    D+  + +++  + +  EP  +    P  L NG  GI
Sbjct: 758  KDHASARYISTALNKITRYIFPEQDDHLLKYQE-DDGQMVEPEYYVPIIPMSLVNGAEGI 816

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSI ++N  E+       +D                 F        + + I+E+ 
Sbjct: 817  GTGWSTSIQNYNPIELVNQIKNRLDGQP--------------FQPMTPFYRNFDGIIENL 862

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              G G  +      + +    +  I + E+P +       E + + +  +   +++    
Sbjct: 863  PNGNGIIKG-----IIDCNEATDIITIRELPIKKWTRNYKEWLDKEMAEEGSQIVDLREY 917

Query: 304  ESAEDVRIVLFPKNRSL-DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
             +   +   +   +  + D    +E   + +         +   S  ++ +   +  I++
Sbjct: 918  HTKYKIHFEIQMVDGFVSDLKNPLEYFKLSTPA--SCSNMVLFDSNNKIKKYECVSDIME 975

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            E+   R +   +R  + +  +DR V++L   L     +      IRN  K
Sbjct: 976  EFYQVRLQFYHKRKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKK 1025


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 170/441 (38%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K+++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYTKGTKSITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 782  SARYIFTIMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +EI +    +I+  E S       ++ P +         +  +     +  
Sbjct: 841  STKISNYNPREIMKNLRKMINGQEPS-------VMHPWY---------KNFLGRMEYVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    + ++E+P  V      E + E +     K   ++ + R+ 
Sbjct: 885  GRYIQTGNIQILSGNR----LEISELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    +     +F L+   +   ++        + +      
Sbjct: 941  HTDTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFD-QNNCLRRFPTAID 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1000 ILKEYYKLRREYYARRRDFLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKAMCD 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELLKRGYRPDPVKEWQ-RRIK 1077


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 161/417 (38%), Gaps = 36/417 (8%)

Query: 8   NSNTLVEENVKAVSLRF------ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
              T V+ +V  +           + +  + ++++    R+IP +R  FKP  R+++   
Sbjct: 356 EPGTYVDYDVDEMGYPEYAYRAGFVNKELILFSMADNI-RSIPSVR--FKPSQRKVLFCC 412

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
            +  L       + A  V E     + HG+ S+   +V +AQ F       L+   G FG
Sbjct: 413 FKRNLRAELKVAQLAGYVSE--HSAYHHGEASLQGCIVNMAQDFVGSNNIHLLPPIGQFG 470

Query: 120 N--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           +  + G  AA+ RY    + Q+  LI   +D D + +  + + +  EP  +    P +L 
Sbjct: 471 SRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLV 529

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG+ GI  G +   P++N  +I +    +     I+ E++          TG I+     
Sbjct: 530 NGSDGIGTGWS---PNYNPLDIIKGLRQM-----INGEEIAPLTPWYREFTGHIV----- 576

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
               S     G + V+  + V +       +VV+E+P +       + +  L+ A  I  
Sbjct: 577 EKANSRGTDTGNYIVQGLYEVTDDS----TLVVSELPVKSWTQTYKQFLEGLLDAGTIKD 632

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVM 355
            ++   +      I +  K  S D       I     +E+    +   L      + +  
Sbjct: 633 FKENHTDVKVLFTITMEQKALS-DVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYE 691

Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
               I+ E+   R E   RR    +Q +  ++++L       L + E   ++ N  K
Sbjct: 692 NPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRKK 748


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 188/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A   +I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRGMINGESAKQV-VRNIVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTLN 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/149 (45%), Positives = 107/149 (71%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           +   I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S
Sbjct: 1   SKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V 
Sbjct: 61  IYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVS 120

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           F   +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 FAWNFDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 194/497 (39%), Gaps = 35/497 (7%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N  N +  ++ + K +S+   + +  + +AL+    RAI    DG KP  R+I+ A
Sbjct: 644  MTKANAFNGDVDIDRSKKVLSIPDFVHKEMVHFALAG-NARAIAHSVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            + + G    A   + +  + EV      HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  LFKRGKAESAKVAQLSGYISEVSS--FHHGEMSLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A ++    DE  +D+ +      +EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARVLFPEDDEPLLDYTEE-EGTTTEPNHYVPIIPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IPS++  ++     ++I+        +   +       G +     
Sbjct: 820  CNGSVGIGFGFASNIPSYHPLDVSAVVRSMINGETAKQV-VKRLVPWAVGFQGTVRRGPE 878

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F    ++   +       I V+E+P+          I+ L     + 
Sbjct: 879  -----------GEFIAVGKYSAYKNNY----IHVSELPWTTSIEAFRGHISNLANMDVVQ 923

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ +++   + +   ++  +   +    +      +   S    P    
Sbjct: 924  RIADYSGANHIDIDLIVREGSVTTWSEVEAD---LALSQKIYINGTVFSPSGTLAPLEGD 980

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE-IIAIIRNEDKPKP 415
            L  IL+     R  +  +R + ++  ++  +  L+      ++  +  I  +   D+   
Sbjct: 981  LSPILQRHYDRRLNLYKKRRARQLGLLEHDLACLESTRKFVMHFRQGKIDFMTATDETLQ 1040

Query: 416  VMVSRFSLTENQV--DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
             +  R  L +     D IL   +    +    ++  ++  L    E++     +  + W 
Sbjct: 1041 KVCDRLHLQKVDAKYDYILKKPITFFTRTNTTKLDDDIKKLQDSIEEMKK--TTPTKMW- 1097

Query: 474  QIACEIREVKEIFSKST 490
                E+ +  ++F +  
Sbjct: 1098 --LRELDQFDKLFEEYE 1112


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  +E  ++  E   LLAE  ++  +LNS ++    I 
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIAELLYILNSPERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELEAIKTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE SRG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEASRG 183


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 168/441 (38%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K+++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYTKGTKSITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 782  SARYIFTLMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +EI      +I+  E         ++ P +         +  +     +  
Sbjct: 841  STKISNYNPREIMNNLRKMINGQE-------PVVMHPWY---------KNFLGRIEYVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    + ++E+P  V      E + E +     K   ++ + ++ 
Sbjct: 885  GRYVQTGNLQILHGNR----LEISELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    +     +F L+   +   ++        + +      
Sbjct: 941  HTDTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFD-QNNCLRRFPTAID 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1000 ILKEFYKLRREYYARRRDFLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKAMCD 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELLKRGYRPDPVKEWQ-RRIK 1077


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 169/441 (38%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K ++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 669  LYTKGTKHITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 727

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    + HG+ S+  ++V LAQ +       L+  +G FG     G   A
Sbjct: 728  VAQLSGSVAEMSA--YHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCA 785

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  ++++ T + +  EP+ +    P +L NG  GI  G 
Sbjct: 786  SARYIFTLMSPLTRLIFHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAEGIGTGW 844

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            AT I +HN +EI +    +I++ E          + P +      +E          +  
Sbjct: 845  ATKIANHNPREIMKNLRRMINSEE-------PVAMHPWYKNFAGRME---------YVSD 888

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    + +TE+P  V      E + E +     K   ++ + R+ 
Sbjct: 889  GRYVHTGNIQILPGDR----VEITELPVGVWTQNYKENVLEALANGTEKVKAVVSEYREY 944

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +        NR    D     +F L+   +   ++        + +      
Sbjct: 945  HTDTTVRFVVSFAPGEFNRIRSEDGGFYRVFKLTSSLSTNQMHAFD-QNNCLRRFPTTMD 1003

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +LKE+   R E   RR  + +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1004 VLKEFYKLRLEYYARRKDYLVGQLTAQAD--RLSDQARFILEKCEKTLVVENKQRKAMCD 1061

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1062 ELVKRGYRPDPVKEWQ-RRIK 1081


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R+ LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LN+ ++    I 
Sbjct: 14  RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNNPERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELEAIKTQYSDE-----RRT---EITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVG 665
           +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  T D +    
Sbjct: 105 NQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFS 164

Query: 666 ENRKLLIFSIDQIPEMSRG 684
              +L    + Q+PE SRG
Sbjct: 165 SRGRLYWMKVYQLPEASRG 183


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 102/133 (76%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 168/434 (38%), Gaps = 41/434 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K++S    + +  + ++ S   ER+IP + DG KP  R+++    +        
Sbjct: 684  LYGQETKSLSYHDFINKELVLFSNSD-NERSIPCMVDGLKPGQRKVVFCCFKRNDKREVK 742

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAA 127
              + A  V E+    + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 743  VAQLAGSVAEMSA--YHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSA 800

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE-DSEPVVFPSKFPNLLANGTSGIAVG 186
            + RY    ++ +A L+   VD++ + +   Y++    EP  +    P +LANG  GI  G
Sbjct: 801  SPRYIFTMLSTLARLLFPVVDDNLLKY--NYDDYLRVEPEWYMPIIPLVLANGGEGIGTG 858

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             A+ IP ++V+EI      +I+          E +   + P+      + + + ++  + 
Sbjct: 859  WASRIPKYDVREIINNIHRMINGE--------EPLPMVNLPSYKGFKGTIDELAKNQYVN 910

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-------LE 299
             G   +     +E          +TE+P +     L  K  E ++   +         + 
Sbjct: 911  NGEVAIIDSTTIE----------ITELPVKTWTPGLTYK--ENVLEVMLNGTEKVPALIT 958

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPL 357
            D ++   +     +         +     +  +  ++     N  VL      + +   +
Sbjct: 959  DYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESV 1018

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              ILKE+   R +    R  + +  +    E  K    A   +++I   +  E+KPK  +
Sbjct: 1019 QDILKEFFELRMKYYVLRKDWLVGML--GAESAKLSNQARFILEKIQGTLVIENKPKKEL 1076

Query: 418  VSRFSLTENQVDAI 431
            +          D +
Sbjct: 1077 IRMLQQMGYDSDPV 1090


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 189/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTLS 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 169/441 (38%), Gaps = 41/441 (9%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             + L  +  K +S    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 721  EDYLYGQTTKYLSYNDFVNKELVLFSNSD-NERSIPCLVDGLKPGQRKVLFCCFKRNDKR 779

Query: 69   GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                 + A  V E+    + HG+ S+  ++V LAQ F       L+   G FG     G 
Sbjct: 780  EVKVAQLAGSVAEMSA--YHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGK 837

Query: 125  SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGI 183
             +A+ RY    ++ +A L+   VD++ + +   Y++ +  EP  +    P +L NG  GI
Sbjct: 838  DSASPRYIFTMLSSLARLVFPPVDDNLLKY--NYDDNQRVEPEWYIPIIPMVLVNGAEGI 895

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G A+ IP+++++EI      ++   E            P  P       + E ++ + 
Sbjct: 896  GTGWASKIPNYDIREIVNNIHRMLSGDE----------PLPMLPNYKGFKGTIEQVMNNQ 945

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLED 300
             +  G   +     +E          ++E+P +       E + E ++    K  PL+ D
Sbjct: 946  YMNSGEVAIIDSTTIE----------ISELPVKAWTQTYKENVLEPMLNGTEKVPPLITD 995

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             ++   +     +      +  + L E+          F L   +       +V    G 
Sbjct: 996  FKEYHTDTTVRFVV----RMSEEKLREAEAA--GFHKVFKLQNPLTCNSMPEEVRVCAGY 1049

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
             +++   R +    R  + +  +    E  K    A   +++I   +  E+KPK  ++  
Sbjct: 1050 SQDFFELRMKYYVLRKDWLVGML--GAESAKLTNQARFILEKIQGTLVIENKPKKELIRM 1107

Query: 421  FSLTENQVDAILNLRLRSLRK 441
                    D +   +L   + 
Sbjct: 1108 LQQMGYDSDPVKAWKLAQEKN 1128


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 189/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTLS 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 189/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTLS 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 98/130 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVA 140
           YTEARMT++ 
Sbjct: 123 YTEARMTKIT 132


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 106/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/133 (52%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           +F+D Y+  + EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 191/504 (37%), Gaps = 66/504 (13%)

Query: 6    ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                 T ++ N K +     + +  + ++++   +R+IP + DG KP  R+I+    +  
Sbjct: 662  QHEPGTHLDHNQKIIKYSDFINKELILFSMAD-LQRSIPSMVDGLKPGQRKILFCSFKRN 720

Query: 66   LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NI 121
                A   + +  V E     + HG+QS+  +++ +AQ F       L+   G FG  ++
Sbjct: 721  FVKEAKVSQFSGYVSE--HSAYHHGEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSV 778

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
             G   A+ RY   +++ +   +    D+  +D+ D  + +  EP  +    P +L NG  
Sbjct: 779  GGKDHASARYIYTQLSPITRFLFPKDDDGLLDYLDE-DGQTIEPTWYMPIIPTVLVNGCE 837

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G +T IP++N +++      L++       +++E       P        + +I +
Sbjct: 838  GIGTGWSTFIPNYNPRDVVANIRRLLNG------EMME-------PMNPWYRGFKGTIEK 884

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAK----- 293
                  G         + EV      + +TE+P +         +  + E    +     
Sbjct: 885  GASKEGGCSSYTVNGVINEV--NETTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLP 942

Query: 294  RIPLLEDIR---DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            + P ++D R   D++A    + L  +N  +     +   F L+   +   +++   S G 
Sbjct: 943  KDPFVKDFRKYGDDAAVHFEVQLSEENMLVAKQEGLLKKFKLTTTISTSNMHLFD-SAGV 1001

Query: 351  VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            + +    + IL+ +   R E    R    ++ ++  +  L+  +   L +     I+ N 
Sbjct: 1002 IKKYDNPEQILENFFHLRLEYYETRKKVLLENLEFELLKLENKVRFILGVVRGEIIVNNR 1061

Query: 411  DKP------------------KPVMVSRFSLTEN-------------QVDAILNLRLRSL 439
             +                   K V+      TE                D +L++ + +L
Sbjct: 1062 KRADLLLELHQKGFNPIPKKSKAVVAGATDDTEEAEDSPDVSGVRASDYDYLLSMAIGTL 1121

Query: 440  RKLEEYQIKSELDNLLAEKEKIDS 463
                  Q+ ++ D L  E + +  
Sbjct: 1122 TLERVQQLCADRDKLNGEVDSLRK 1145


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 106/147 (72%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
             I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+Y
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFA 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LNS ++    I 
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELEAIKTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE SRG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEASRG 183


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 85/528 (16%), Positives = 187/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++   L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTLS 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  +   +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMKMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  +E  ++  E  +LLAE  ++  +LNS ++    I 
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELEAIKTQYSDG-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 44.4 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE SRG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEASRG 183


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 189/473 (39%), Gaps = 46/473 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           V    +   +      +A+ TI+ERA+P + DG KPV R I++++ +   + G +FKK+A
Sbjct: 3   VTKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILYSVLK---NAGKSFKKNA 59

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
            I G +    + HG+ +  D+   +A  +   +P+I GQGNFG+      AA RY     
Sbjct: 60  AIAGVISEYGYNHGEVAAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARYIFCTK 119

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
               + + + ++        T +     P  +    P +L NG SGIA G AT I  H++
Sbjct: 120 HDQFDSMFKDMELLE---ESTADGS-ELPRYYLPILPTVLLNGVSGIATGFATKILPHSL 175

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
             + +    ++   +    +    I  P F             +         + +   +
Sbjct: 176 VSVAKCVEQVLKTGKCDEPQ----IQFPLFY----------GKITPVVDKNQAWTLEGCY 221

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            +     G   + ++EIP +  + + +  + +L+   +I       DES  D R   F  
Sbjct: 222 EL----SGKTKLTISEIPVKYDRVKYVTLLDKLVETDKIVG----YDESKMDDREFCFKI 273

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ-VMPLDGILKEWLAHRREVLFRR 375
               D D   E+I     +       + V+      +       ++ +++ +R  +L +R
Sbjct: 274 TLKRDFDTSHENIIKTFKLAQNVSQYIRVIDQNGDLKPYEKASDLIVDFVNYRFGILQKR 333

Query: 376 SSF-------RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                     ++     +VE +K      L +DE I   +   K     +  F   ++  
Sbjct: 334 IDNAIVATTEKLGYAQAKVEFIK------LVLDEKIKFHKQTRKQVIEQIQAFDSLKDYA 387

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIR 480
           + ++ + L  + + E  +++ ++  L  E +   +   S K+Q+   I   ++
Sbjct: 388 EQLVQMNLYHMTEDELTKLEKQVTELTKENDFWKN--TSPKKQYQSDIKEFLK 438


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  +E  ++  E   LLAE  ++  +LNS ++    I 
Sbjct: 14  RDGHYYLTEPQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIAELLYILNSPERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELEAIKTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 44.4 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE SRG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEASRG 183


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain Friedlin]
          Length = 1236

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 188/528 (35%), Gaps = 48/528 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G   AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG  GI  G AT+IPS +  ++  A  A+I+        +   +       G +     
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 237  ES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
               I               R+ +            +EIP+          I+ L  A  +
Sbjct: 879  NEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADVV 922

Query: 296  PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
              + D    +  D+ +++   + +   +         +D+     + +N         + 
Sbjct: 923  QRIADYSGANHIDIDLIVRDGSLTTWAE-------CETDLALAQRIYINGTVFSPAGTLS 975

Query: 356  PLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N  
Sbjct: 976  PIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNAT 1035

Query: 412  K---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                 K  +       +   D IL   +    +    ++++++    A+ E++       
Sbjct: 1036 DDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------- 1088

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 -KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 105/138 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE RM ++A  +L  +D++ VD+   Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSHNVQEICEA 202
           VGMAT+IP HN+ E+ + 
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEAR
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/484 (15%), Positives = 186/484 (38%), Gaps = 43/484 (8%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
             N +++     ++L   +    + ++     +R+IP++ DG K   R+I+++  +  L 
Sbjct: 151 ERNNVLDTRDTKITLGDFIHREMIHFSKYDC-DRSIPNMMDGLKVSQRKILYSAFKKNLV 209

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                 + +  V E  G  + HG+ S+  ++V +AQ F       ++   G FG     G
Sbjct: 210 HEIKVAQFSGYVSEHSG--YHHGENSLNGAIVNMAQNFVGSNNINILMPNGQFGTRLQGG 267

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             +A+ RY    + ++  +I +  D+  + +    +    EP+ +    P +L NGT GI
Sbjct: 268 KDSASERYIFTNLNKITRMIFKKEDDAILTYLK-DDGTFVEPIYYLPILPMILVNGTKGI 326

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T IP  +  ++       + +   + +    ++       G I  +         
Sbjct: 327 GTGFSTDIPCFHPVQLINYIQHKLADKAYTRD----FVPFYQGFQGTIEKDG-------- 374

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                 F  +  + +         I +TE+P  V     I     L + K + +L+D +D
Sbjct: 375 ---DRRFITKGNYTI-----DKQVITITELPIGVWNEDYI-----LHLEKCMDILKDYKD 421

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           +S +          + ++   L+++  + +                ++     +  I  +
Sbjct: 422 QSTDKKVYFKLTLKQPMEESDLIKTFKLST--TLSINNMNLFDHNDKLKHYNEVYEICDD 479

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILK---GLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           ++  R +   +R    +Q +   +E+LK     +   LN    +    N D    +   +
Sbjct: 480 FIGIRLDYYEKRRLHLIQILKEEMEVLKNKCNYINELLNDTLDLRKKTNNDICDILEKKK 539

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           ++   +    ++ + + S+ +     +      L  ++ + D + NS  +  +    E+ 
Sbjct: 540 YTKINDSYHYLIKMSMDSVCQENVDSLNQ---QLNGKQSEYDKMWNSSHK--DIWKDELE 594

Query: 481 EVKE 484
           ++K+
Sbjct: 595 QLKK 598


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 129/341 (37%), Gaps = 31/341 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
            K ++    + +  + ++ S   ER+IP L DGFKP  R+++    +          + A
Sbjct: 563 TKHLTYNDFINKELILFSNSD-NERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLA 621

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYT 132
             V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ RY 
Sbjct: 622 GSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYI 679

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
              ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A  +P
Sbjct: 680 FTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLP 738

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
           +++ +EI      ++D  +            P  P       + + + ++     G   V
Sbjct: 739 NYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGEIFV 788

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL---LEDIRDESAEDV 309
                          + +TE+P +       E++ E ++         + D ++   +  
Sbjct: 789 V----------DRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTT 838

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
              +               +  +  ++T    N  VL    
Sbjct: 839 VKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHM 879


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/123 (59%), Positives = 97/123 (78%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VI
Sbjct: 1   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 60

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  +
Sbjct: 61  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 120

Query: 144 LQG 146
           +  
Sbjct: 121 MAD 123


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/127 (57%), Positives = 100/127 (78%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 143 ILQGVDE 149
           ++  +++
Sbjct: 121 LMADLEK 127


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/147 (46%), Positives = 105/147 (71%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
             I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+Y
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR++Q +  R  L+   GN G++DGD  A  RYTEAR++++A  +LQ ++++ V F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFA 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSG 182
             +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 169/444 (38%), Gaps = 29/444 (6%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           L   +      +AL T++ RAIP+L DG KPV R ++H   ++       + K A + G 
Sbjct: 8   LTDIINGEARDFALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGA 67

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
                + HG+ S  D+   +A  +    P++ G+GNFG+     AAA RY E R+     
Sbjct: 68  AASLGYHHGEVSAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRVHDNFR 127

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201
              +  +          +++   P  +    P +L NG  GI  G AT+I  H+   I E
Sbjct: 128 KYFKDTEVAPAHK----DDDHIPPAYYLPIIPMVLINGVQGIGTGFATNILPHSEASIIE 183

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
               L    ++  E          FP     V   +    +     G +++  +  +E  
Sbjct: 184 -CTKLALQGKLDKE------PQVQFPQFKGTVVCNDE---NKYSLFGSYKLIGKTQIE-- 231

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321
                   +TEIPY+  ++  +E   +++ +  + +  D           V   K  +L 
Sbjct: 232 --------ITEIPYKYDRADYVENCLDILESDGLIVSYDDNCGKHGFGFKVKLAKAFNLP 283

Query: 322 PDLLMES---IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
            D        +      +        +  +G +        ++  ++  R++ +  R   
Sbjct: 284 EDEAKRHAYIVDKFKLKQDITQFIYTIDEVGALRGFPNASSLIHHFVEVRKQFVQARIDK 343

Query: 379 RMQAIDR--RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
           + +   R  ++ I K   I  +    I+   +   + K  +V+      + VDA+L+L +
Sbjct: 344 KTEEARRNLQLAIAKAFFIRKVLDGTIVIKGKKRQELKDEIVALGEPFASNVDALLSLNV 403

Query: 437 RSLRKLEEYQIKSELDNLLAEKEK 460
             + + E  ++        +E E 
Sbjct: 404 YHMAEDEAVKLLERAQEAKSELEY 427


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/133 (53%), Positives = 103/133 (77%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ ++++ V
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 153 DFRDTYNEEDSEP 165
           DF+D Y+  + EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 108/139 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSHNVQEICEA 202
           AVGMAT+IP HN+ E+   
Sbjct: 121 AVGMATNIPPHNLTEVING 139


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 167/441 (37%), Gaps = 40/441 (9%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  K+++    +    + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 665  LYTKGTKSITYADFINLELVLFSNAD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 723

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + +  V E+    H  G+ S+  ++V LAQ F       L+  +G FG     G   A
Sbjct: 724  VAQLSGSVAEMSAYHH--GEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCA 781

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  +D++   + +  EP+ +    P +L NG  GI  G 
Sbjct: 782  SARYIFTLMSPLTRLIYHPLDDPLLDYQ-VDDGQKIEPLWYLPIIPMVLVNGAEGIGTGW 840

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T I ++N +EI      +I+  E         ++ P +         +  +     +  
Sbjct: 841  STKISNYNPREIMNNLRKMINGQE-------PVVMHPWY---------KNFLGRIEYVSD 884

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
            G +       +    R    + ++E+P  V      E + E +     K   ++ + ++ 
Sbjct: 885  GRYIQTGNLQILHGNR----LEISELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEY 940

Query: 305  SAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              +     +         R    +     +F L+   +   ++        + +      
Sbjct: 941  HTDTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFD-QNNCLRRFPTAID 999

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            ILKE+   RRE   RR  F +  +  + +  +    A   +++    +  E+K +  M  
Sbjct: 1000 ILKEFYKLRREYYARRRDFLVGQLTAQAD--RLSDQARFILEKCEKKLVVENKQRKAMCD 1057

Query: 420  RFSLTENQVDAILNLRLRSLR 440
                   + D +   + R ++
Sbjct: 1058 ELLKRGYRPDPVKEWQ-RRIK 1077


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 111/148 (75%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL N
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 179 GTSGIAVGMATSIPSHNVQEICEAALAL 206
           G SGIAV MAT+IP HN+ E+    LA 
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLAY 148


>gi|289805577|ref|ZP_06536206.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 203

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 11/188 (5%)

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628
            Y LP     S    G  I  L+ L  N+ I        Y+    + + ++ G       
Sbjct: 13  VYQLPEA---SRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTAL 69

Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686
           +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R   G
Sbjct: 70  TEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG 129

Query: 687 VRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           VR       G   V+   I  G    +      Y +           R   G +  K   
Sbjct: 130 VRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTE 187

Query: 746 RSGKFLSS 753
           R+G  + +
Sbjct: 188 RNGSVVGA 195



 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 35  EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 94

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 95  DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 153

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
           L V+  G        E    +R  +  + +   E+   VV
Sbjct: 154 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVV 193


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 98/130 (75%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 131 YTEARMTQVA 140
           YTEARMT++ 
Sbjct: 123 YTEARMTKIT 132


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 24/282 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S T ++   K +     + +  + ++++ +  R+IP + DG KP  R+I+    +  L  
Sbjct: 671 SGTHLDTEGKYIKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVK 729

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                + +  V E     + HG+QS+  ++  +AQ F       L+   G FG  D  G 
Sbjct: 730 EIKVAQFSGYVSE--HSAYHHGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGK 787

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA+ RY    ++ +   I    D+  +++ D  + +  EP  +    P +L NG+ GI 
Sbjct: 788 DAASARYIFTLLSPITRSIFPKDDDILLNYLD-EDGQSIEPTWYVPILPMVLVNGSEGIG 846

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +T IP++N ++I      L+++  +                G I             
Sbjct: 847 TGWSTFIPNYNPRDIVANLRRLLNDEPVEPMD-----PWYRGFKGSIQKTG--------- 892

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286
              GG        +E V      + +TE+P +       E +
Sbjct: 893 TKAGGVSYTVTGIIEVVDD--TTLRITELPIRRWSQDYKEFL 932


>gi|255519785|ref|ZP_05387022.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 288

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 10/200 (5%)

Query: 561 DRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLL 615
           D +L  +  GK Y      +        G  I  L+ +   + +        +     L 
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLF 60

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
             +  G       S+     + G   +++   +++  V    G  ++ +  ++ + + F 
Sbjct: 61  FTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFP 120

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGK 732
            + I  M R   GVR    ++    +VI  ++ E     +    + Y +        L  
Sbjct: 121 EENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRN 178

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG+G        ++G  ++
Sbjct: 179 RGGMGVKTVTITEKNGNLVA 198



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR------SLKSHSVDLSALHFKEGDSLKI 553
            E      A +  +    +      +  G ++        K     L A+  +E D L  
Sbjct: 38  IESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELIS 97

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
                 +  +++ +  G++   P  N+         ++  I L  + +++   V +   K
Sbjct: 98  VQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAGVRG-IRLREDDEVIGMEVLEDDEK 156

Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRK 669
           +LVV+ KG       S+     R G   KT         +  +  VTG+  + ++  +  
Sbjct: 157 VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 216

Query: 670 LLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           L+ F ID + +  R   GV+L    +      + 
Sbjct: 217 LIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 250



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 458 KEKIDSLLNSGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTF-------------CEVS 503
              +  +  S +Q    I   E  +   +F  +     +RTT               E+ 
Sbjct: 32  IINLLGI-ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELR 90

Query: 504 RADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIAL 555
             D+    Q     + + +  +  G         IR +   +  +  +  +E D +    
Sbjct: 91  ENDELISVQMTDGSKNMIIA-TKHGQSIYFPEENIRVMGRTAAGVRGIRLREDDEVIGME 149

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
                +++L+++  G     PA         G  ++ +     N ++V          L+
Sbjct: 150 VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 209

Query: 616 VVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKV 656
           +++  G     E   +    R   G   +++  +EK+  V KV
Sbjct: 210 LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 252


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 73/120 (60%), Positives = 96/120 (80%)

Query: 22  LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81
           +   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 175/461 (37%), Gaps = 35/461 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N  T  ++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  +   
Sbjct: 688  NEITNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNM 744

Query: 68   FGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NID 122
              +   K +++ G V  +  + HG++S+  +++R+ Q F      PL+   G FG  +  
Sbjct: 745  DESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEG 804

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G+ AA+ RY    +     L+    D+D +  ++       EP       P +L NGT G
Sbjct: 805  GNDAASARYIFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEG 863

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T I + N  +I +     ID+     E     I     P         E +  +
Sbjct: 864  IGTGWSTKIANRNPIDIIDMIRRKIDSISTEYE-----IP----PFYEEFRGKLEVVTPT 914

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              +  G  ++      E     ++ I + E+P  +  S+  EK+++++    +    +  
Sbjct: 915  KFISSGKIQLI---RPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERH 971

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             E     RI L  K  S         +     + T    N  +    G + +   +  I 
Sbjct: 972  TEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIA 1031

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSR 420
             E+   RR++  +R   + +  + ++  ++  L     +      IR+  + +    +  
Sbjct: 1032 AEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQE 1091

Query: 421  FSLTEN------------QVDAILNLRLRSLRKLEEYQIKS 449
                 +                +L + +  L   E  +++ 
Sbjct: 1092 MGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEE 1132


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 108/143 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP ++   L+E + 
Sbjct: 122 IDAVKLVMDNPYVTTRDLMEVLP 144


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I 
Sbjct: 14  HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELELIRDQFGDK-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 42.8 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE +RG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEANRG 183


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 175/461 (37%), Gaps = 35/461 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N  T  ++    +S +  ++ + + + +    +R+IP L DG KP  R+I+  +  +   
Sbjct: 572  NEITNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNM 628

Query: 68   FGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NID 122
              +   K +++ G V  +  + HG++S+  +++R+ Q F      PL+   G FG  +  
Sbjct: 629  DESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEG 688

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G+ AA+ RY    +     L+    D+D +  ++       EP       P +L NGT G
Sbjct: 689  GNDAASARYIFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEG 747

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T I + N  +I +     ID+     E     I     P         E +  +
Sbjct: 748  IGTGWSTKIANRNPIDIIDMIRRKIDSISTEYE-----IP----PFYEEFRGKLEVVTPT 798

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
              +  G  ++      E     ++ I + E+P  +  S+  EK+++++    +    +  
Sbjct: 799  KFISSGKIQLI---RPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERH 855

Query: 303  DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGIL 361
             E     RI L  K  S         +     + T    N  +    G + +   +  I 
Sbjct: 856  TEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIA 915

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-PVMVSR 420
             E+   RR++  +R   + +  + ++  ++  L     +      IR+  + +    +  
Sbjct: 916  AEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQE 975

Query: 421  FSLTEN------------QVDAILNLRLRSLRKLEEYQIKS 449
                 +                +L + +  L   E  +++ 
Sbjct: 976  MGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEE 1016


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 104/134 (77%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  +L  +++D VDF   Y+  +  P V P++ PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSH 194
           SGIAVGMAT+IP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/143 (57%), Positives = 113/143 (79%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPEIS 213
           IP HN+ E+ +  L+L  NP+I+
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIT 143


>gi|48429402|gb|AAT42469.1| ParC [Escherichia coli B]
          Length = 166

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 109/172 (63%), Gaps = 6/172 (3%)

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KL
Sbjct: 1   VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKL 60

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           EE +I+ E   L  E++++  +L S ++  N +  E++      + +   G  R +  + 
Sbjct: 61  EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ------ADAHAYGDDRRSPLQE 114

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
               KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS K A
Sbjct: 115 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 166


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 106/146 (72%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
            I+ERA+PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD
Sbjct: 1   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYD 60

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F  
Sbjct: 61  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 120

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSG 182
            +++ + EP V P+ FPNLL NG+SG
Sbjct: 121 NFDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/136 (58%), Positives = 107/136 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   WGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSHNVQEI 199
           AVGMAT+IP HN+ E+
Sbjct: 121 AVGMATNIPPHNLTEV 136


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 109/143 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|312877897|ref|ZP_07737842.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795323|gb|EFR11707.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 237

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 5/174 (2%)

Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           S +  G AI  LI +  ++ I             L++ +  G    V  SE    T+ GK
Sbjct: 5   SRQAKGTAIVNLIQIGKDEKITATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGK 64

Query: 640 TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697
             + ++ ++ +  V   +G D + +V  +   ++F+ + +  M R  +GV+  + + G  
Sbjct: 65  KAITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVMGRSAQGVKGMTLESGDF 124

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             V   K  +G   +      + +          KRG  G L  K   ++GK +
Sbjct: 125 I-VGMEKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTDKTGKIV 177



 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 12/193 (6%)

Query: 517 KEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           KE   ++ +  G I+ +       +      A+   + DSL         D I+L+S+ G
Sbjct: 35  KEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSSG 94

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630
                   ++       + ++ +  L     IV     +    LL V+  G     E  E
Sbjct: 95  YCVVFNENDVRVMGRSAQGVKGM-TLESGDFIVGMEKANDGKYLLCVTENGFGKRSEIEE 153

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GK 685
                R  K  L     +K   +V +      D + +       +   + Q+P   R  +
Sbjct: 154 YRKTKRGAKGVLTYKVTDKTGKIVDIKMVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQ 213

Query: 686 GVRLQSYKDGGIS 698
           GV+L       I 
Sbjct: 214 GVKLMRIDGDSIK 226


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 109/143 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDALKLVMDNPDVTTRDLMEVLP 144


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 108/143 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A    +DNP+++   L+E + 
Sbjct: 122 IDAVKLAMDNPDVTTRDLMEVLP 144


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 95/119 (79%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK H
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           PHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 119


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 179/481 (37%), Gaps = 52/481 (10%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L   N    +    + +  L Y+   ++ R++P++ DG+KP  R+++  M          
Sbjct: 173 LSSTNCNQKTFSEFVNKELLEYSQLDLR-RSLPNIVDGYKPSQRKVLFTMFGRYERDEVR 231

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV----QRYPLISGQGNFGNIDGDSAA 127
             + A  V +  G  H  G++S+ ++++RLAQ FV        L  GQ       G+ AA
Sbjct: 232 VSQLAGAVSQYCGYHH--GEESLVNTIIRLAQDFVGSNNLNLLLPLGQFGTRLAGGEDAA 289

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           + RY    ++ +A +I    D+  + +         EP  +    P +L NG  GI  G 
Sbjct: 290 SARYIYTSLSPLARIIFPRADDKVLKYL-MEENTFIEPEWYCPIIPMILINGAEGIGTGW 348

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           AT I     ++I   A  LID                  P   ++   R+       +  
Sbjct: 349 ATKILPRCPRQIISNAQRLIDGR----------------PLQDMLPHFRKFQGTINEITP 392

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE------LIIAKRIPLLEDI 301
             + +  +     +  G   I +TE+P  +  ++  EK+ +      LI        E++
Sbjct: 393 RQYSISGKISYHRLRSGLRAI-ITELPTGIWNNKYKEKVLDSIMKSGLISYFICSSYEEL 451

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
             ES     + +  K    D   + +++  L  + +    N  +L      + +      
Sbjct: 452 HSESNVHFILHVIDKPLISDKKQI-KTLNRLLKLRSVASENSMILFDEKNVLRKYNSTVD 510

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----- 414
           I +E+   RR+    R  + ++A+D++++ +   +     +     II  +++ +     
Sbjct: 511 IFQEFFEVRRQKYVERREYELKAMDKKLKFIGNQVRFVNAVINGEIIIEKKNRVEIVTQI 570

Query: 415 ------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
                          V     + +    +L++ L  L   E   ++ +   L    + + 
Sbjct: 571 IEKGFDSNPMKMKNTVDENRNSPDFA-YLLDMPLCRLSNEEILILQEKRSELWERFKALK 629

Query: 463 S 463
           S
Sbjct: 630 S 630


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 183/498 (36%), Gaps = 74/498 (14%)

Query: 9    SNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
              T V+ ++    + +     + +  + ++      R+IP+L DG KP  R+++ A  + 
Sbjct: 795  EGTYVDYSINNQCRNLRYFDFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKK 853

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
             L+      + A  V E     + HG+ S+  ++V +AQ F       L+   G FG+  
Sbjct: 854  KLNNELKVAQLAGYVAE--HSAYHHGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRK 911

Query: 122  -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
              G  A+A RY   ++++    I    D+  + +    + +  EP+ +    P +L NGT
Sbjct: 912  EGGKDASAARYIFTKLSKWTRYIFPEADDPLLTYLY-DDGQQIEPLYYVPIIPMILVNGT 970

Query: 181  SGIAVGMATSIPSHNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPT----------- 228
             GI  G ++S+P++N ++I       L     + +    +   G  FP            
Sbjct: 971  DGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASN 1030

Query: 229  -GGIIVESRESIVESYRLGRGGF-------------------RVRARWCVEEV------- 261
             GG     + +I                                     +EE        
Sbjct: 1031 GGGNNNRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANY 1090

Query: 262  -------GRGSWCIVVTEIPYQVQKSRLIEKIAELI--------IAKRIPLLEDIRDESA 306
                    +    +V+TE+P +       E +   +               + D RD S+
Sbjct: 1091 ETFGNWYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSS 1150

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEW 364
             +   +             ME I  +  +++    +   L     R+ +      ILKE+
Sbjct: 1151 HESVHITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEF 1210

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
            +  R E+  +R ++ +  ++    +L+  ++    +  I  +I   +K K  +VS   L 
Sbjct: 1211 IPIRLEMYEKRKNYLLSKLNYEKCLLEQKILFLKLV--IQGVIGLSNKSKETLVS--DLK 1266

Query: 425  ENQVDAILNLRLRSLRKL 442
            +N + +I   +++ L + 
Sbjct: 1267 KNNIKSI--KQVQELTQW 1282


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/143 (50%), Positives = 109/143 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++V++AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1236

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/529 (16%), Positives = 192/529 (36%), Gaps = 50/529 (9%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RAIP   DG KP  R+I+ A
Sbjct: 644  MTKANAFQGEIDIDRSKKMLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            M        +   + +  + E       HG+ S+ +++V++AQ F       L+  +G F
Sbjct: 703  MLRRHSSEASKVAQLSGYISE--ASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G   AA RY   ++++ A L+    D+  +D+ D       EP  +    P LL
Sbjct: 761  GSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMD-EEGTFVEPHHYVPILPMLL 819

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVES 235
             NG  GI  G AT+IP+ +  ++  A  A+I+    S ++++   +       G +    
Sbjct: 820  CNGAVGIGFGFATTIPAFHPLDVSAAVRAMINGE--SAKQVMRNLVPWAVGFQGTVRRGP 877

Query: 236  RES-IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
                I               R+ +            +EIP+          I+ L  A  
Sbjct: 878  DNEFIAVGKYTAH----PNGRFHI------------SEIPWMTSIEAFRLHISSLASADV 921

Query: 295  IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
            +  + D    +  D+ +++   + +   +         +D+     + +N         +
Sbjct: 922  VQRIADYSGANHIDIDLIVREGSLTTWAE-------CETDLALAQRIYINGTVFSPTGTL 974

Query: 355  MPLDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             P+D     +L+     R ++  RR + ++  ++  +  L+       +  +      N 
Sbjct: 975  SPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEMDLARLQSTRKFVEHFRQGQIDFLNA 1034

Query: 411  DK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
                  K  +       +   D IL   +    +    ++++++    A+ E++      
Sbjct: 1035 TDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQADIAKTQAQIEEL------ 1088

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              ++   +   + E+ +      +  R      +  +   +      + 
Sbjct: 1089 --KRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/539 (16%), Positives = 191/539 (35%), Gaps = 76/539 (14%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            G D +S +  + +     ++    +  + + + ++ +K R+IP L DG KP  R+I+  +
Sbjct: 684  GSDEVSTTEDVEK---TELNYEEFVNSQLMQFGMADLK-RSIPSLIDGLKPSQRKILWTL 739

Query: 62   SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
             +M         + A  V     + + HG++S+  ++VR+ Q F      PL+   G FG
Sbjct: 740  LKMDETTEMKVSQLAGAVAH--RQSYHHGEESLVRTIVRMGQTFCGASNMPLLQPIGQFG 797

Query: 120  N------IDGDSAAAYRYTEAR---------------MTQVAELILQGVDEDAVDFRDTY 158
                   I        R++E R                  +       V+          
Sbjct: 798  TRHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLFPIA 857

Query: 159  NEEDSEPVV----------FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208
            +++  E  V               P +L NGT GI  G +T + + N  ++ +     ID
Sbjct: 858  DDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIRRKID 917

Query: 209  NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR-LGRGGFRVRARWCVEEVGRGSWC 267
               + + ++  +             + +  IV   + +  G  ++      E     ++ 
Sbjct: 918  LSSLVVNEIPPFY---------EDYKGKIEIVTPTKFISTGKIKIS---RPERKNASTFS 965

Query: 268  IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
            + ++E+P  V  S+  EK++ ++    I    +   E   + R++   K  +        
Sbjct: 966  VEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARFLQKSNS 1025

Query: 328  SIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
             +     + T    N  +    G++ +   +  I  E+   R+++  +R   + +  + +
Sbjct: 1026 DLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKRECEAK 1085

Query: 387  VEILKGL--LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD--------------- 429
            ++ +     L  Y+N  E++     E K          L E   +               
Sbjct: 1086 LKYVNNQVHLYYYMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSNYG 1145

Query: 430  AILNLRLRSLR-----KLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIREV 482
             +L + L  L      +L+E + +  L+   AE     S  +S   +    I    +E 
Sbjct: 1146 YLLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDKLEESIKKTRKEY 1204


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I 
Sbjct: 14  RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIAELLRILGSSERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELELIRDQFGDK-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
                +      SA   KE D +   L A+T D IL  S+ G+ Y +    L   
Sbjct: 126 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 180



 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 93  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 152

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684
           V  T D +       +L    + Q+PE +RG
Sbjct: 153 VANTHDTILCFSSRGRLYWMKVYQLPEANRG 183


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/143 (50%), Positives = 109/143 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP++ PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 109/143 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 188/481 (39%), Gaps = 47/481 (9%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             +SL   +++R   Y  +  + R+IP + DG KP  R++++A     +      K   R+
Sbjct: 645  ELSLSDFIDKRLSTYHRANNR-RSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRL 703

Query: 79   VGEVIGKL-HPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGNI--DGDSAAAYRYT 132
             GEV     + HG++S+ ++++ +AQ FV       L++  G+FG     G   +A RY 
Sbjct: 704  TGEVASVAGYHHGEKSLTETIIGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYL 763

Query: 133  EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
             + + ++A ++    D+D  +     + E +EP+ +    P ++ NG  GI  G +T IP
Sbjct: 764  SSFVEKIARVVFPPEDDDLYEKVF-EDNEYNEPINYIPIIPLIVVNGACGIGTGHSTEIP 822

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
             HN  E+C      ++  E       +         G                     +V
Sbjct: 823  PHNPLEVCHWIRCWLEEQETP-----KLSPWWKGFNG--------------TTEVEEDKV 863

Query: 253  RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            +    +E++ +  W IV  E P  +      + +  L   +    ++   D+  ++    
Sbjct: 864  KTFGVLEKMSKTKWKIV--ETPVGLWTYDCKKHLESL---ETQKHIKSFEDKYTDEKASF 918

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPL-NMNVLS-MGRVPQVMPLDGILKEWLAHRRE 370
            +    +   P +          + T F L NM  L       +   +D IL ++   R  
Sbjct: 919  IINTTKDFIPTI------KNLKLSTTFSLRNMTALDEKDNPVKFSTVDDILLKYCPERLR 972

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN--QV 428
            +  +R    +  + + +           ++ + I  ++ +++     +   +  +     
Sbjct: 973  LYQKRKDKMLADLSQEILKQANKQRFLKDVLDGILEMKQQEELLLQKMEDMAYDKWNGSY 1032

Query: 429  DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            D ++ + +R+L K        E+  +L + ++  + L S +        E+   ++ + +
Sbjct: 1033 DYLIGMPIRTLTK----GRLREVGEILRKLKEKHAEL-SERTPKEMWKSELEVFEKKYKR 1087

Query: 489  S 489
             
Sbjct: 1088 D 1088


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 167/418 (39%), Gaps = 33/418 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T V+  V A+S    + +  + ++++   +R+IP + DG KP  R+++ A  +  L 
Sbjct: 682  EPGTFVDYAVDAMSYGDFVNKELILFSVAD-NQRSIPSVVDGLKPSQRKVLFACFKRKLK 740

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  + A  V E     + HG+ S+  ++V +AQ F       L++  G FG   + G
Sbjct: 741  KEIKVAQLAGYVSEHAA--YHHGEMSLTGTIVGMAQDFVGSNNVNLLTPAGQFGTRIMGG 798

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              AA+ RY   ++  VA  +    D+  +D+ +  + +  EP  +    P  L NG  GI
Sbjct: 799  KDAASSRYIFTKLEAVARKVFHPDDDFVLDYLE-DDGQSIEPTYYVPVLPFALCNGADGI 857

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ATS+P++  + +      +ID    + +      + P +   G  + ++       
Sbjct: 858  GTGWATSVPNYAPRALIGVLRRMIDADVGAAD------LAPHYRGFGGDIVAKGG----- 906

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                G F V  R            ++V E+P+     + +E   +L    +         
Sbjct: 907  -KNAGAFAVLGRAT----RLDDVTVLVDELPWTHDYKQWLE--VQLSGDDKTKAWVKDFK 959

Query: 304  ESAEDVRI---VLFPKNRSL-DPDLLMESIFMLSDMETRF---PLNMNVLSMGRVPQVMP 356
            E+  D R+   V   K   L D +  +  +     +E       +N    +   + +   
Sbjct: 960  ENHTDTRVSFTVTVTKGEDLDDAEAALGGLEKKFKLEGSLATSNMNFFDDTGLVIDKYDA 1019

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
               ++K +   R     +R +  ++A   RV +L+  +   L++     +++N  + +
Sbjct: 1020 PFDVIKAFYKVRVATYAKRKAHLVKAKRARVSLLRNKVRFVLSVLSGDLVVQNRKRAE 1077


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 158/417 (37%), Gaps = 42/417 (10%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+   K +  +  + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 628  NHDLYVDHTQKELGYQDFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLK 686

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  +    + E     + HGD S+  +++ +AQ F       L+  +G FG+  + G
Sbjct: 687  QEIKVVQLGGYIAE--HSAYHHGDISLVTTIIGMAQNFVGSNNINLLLPRGQFGSRAMGG 744

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    + ++   I    D+  V + +  + E  EP  +    P  L NG  GI
Sbjct: 745  KDHASARYISTVLNKITRYIFPEQDDHVVKYIE-DDGEMVEPEYYVPIIPMSLVNGAEGI 803

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSI ++N  E+ E     ++  +                         +++   Y
Sbjct: 804  GTGWSTSIQNYNPVELVEQIKKRLNGEQF------------------------DNLTPYY 839

Query: 244  RLGRGGFRVRARWC-----VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
            R   G    +         + E    +  + + E+P +       E + + I  +  P +
Sbjct: 840  RNFDGNIETQPNGNSLVKGIIECNEETDIVTIKELPIKKWTKNYKEWLDKEISQEGNP-I 898

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
             D+R+   +                  +++ +    + T F  N  VL     ++ +   
Sbjct: 899  MDLREYHTKYKIHFEIQMTEGYVSQ--LKNPYEYFKLVTPFSNNNMVLFDGQNKIKKFES 956

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
            +  IL+E+   R +   +R  + +  +DR V++L         +      ++N  K 
Sbjct: 957  IAEILEEFYQVRLQFYQKRKDYLLSKLDREVQLLHNKSRFIKMVISEEIRLKNVKKA 1013


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/143 (51%), Positives = 108/143 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D Y+  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN  E 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/143 (58%), Positives = 113/143 (79%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEARMT++   +L+ +++D +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPEIS 213
           IP HN+ E+ +  L+L  NP+IS
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIS 143


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 145/371 (39%), Gaps = 33/371 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
              L  ++ K ++    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 142 EQFLYGKDTKYLTFNEFVHKELVLFSNSD-NERSIPSLVDGLKPGQRKVLFTCLKRNDKR 200

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 201 EVKVAQLAGSVAEMSA--YHHGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGK 258

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            AA+ RY    ++ +A  +    DE  ++++   + +  EP  +    P +L NG  GI 
Sbjct: 259 DAASPRYIFTMLSTLARKLFNTFDEPMLNYQY-DDNQKIEPEWYIPLIPMVLVNGAEGIG 317

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G +T +P+++V+EI    L +ID  +            P  P+        E + E+  
Sbjct: 318 TGWSTKVPNYDVREIINNMLRMIDGKD----------PLPMNPSYKNFKGDIEELEENRF 367

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
           +  G   +            +  I +TE+P +       E + E+++    K   ++ D 
Sbjct: 368 VANGEVAIL----------DNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDY 417

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
           ++   +     +               +  +  +++       VL    G +     +  
Sbjct: 418 KEYHTDTTVRFVVSMTEEQLMKAEAAGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQ 477

Query: 360 ILKEWLAHRRE 370
           IL+E+   R +
Sbjct: 478 ILQEFFDLRLQ 488


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 166/446 (37%), Gaps = 45/446 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L ++N   VS +  + +  + + L+   ER+IP L DG KP  R+++    +        
Sbjct: 710  LYDKNTYVVSFKDFVNKELVLF-LNCDNERSIPSLVDGLKPGQRKVLFTCFKRADKKEVK 768

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  VGE+    + HG+ S+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 769  VAQLAGAVGEMSA--YHHGEASLMSTIVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSA 826

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY   ++  V + +   +DE+ + F    N++  EP  +    P +L NG  GI    
Sbjct: 827  SPRYIFTQLNPVTKALFPSIDENVLRFLFEENQKI-EPEWYCPVIPTVLVNGAEGIGTAW 885

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T +P +N +EI +   AL     I  ++    I       G I            +L  
Sbjct: 886  STKVPCYNPREIVDNMRAL-----IDGKEPKPLIPWYKHFRGTIE-----------QLDD 929

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI---IAKRIPLLEDIRDE 304
              F       V      +  I +TE+P +       E +   +     K+   + D ++ 
Sbjct: 930  QRFVCNGEVAV----INNETIEITELPIRTWTQTYKETVLVPMMDGNDKQPAFITDFKEY 985

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM------------GRVP 352
              +     +   N         E +  +  ++T       V               G + 
Sbjct: 986  HTDTTVKFVIKMNGDKLRASKEEGLHKVFKLQTVINTTSMVYEHYSRVCQVLFDPFGYLR 1045

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +   +  I KE+   R++    R SF+   +  + E L     A   + +I   I  E+K
Sbjct: 1046 RFENVTDICKEFFEIRKKKYIERKSFQEGLLRAQSERLSN--QARFILAKIKGEILIENK 1103

Query: 413  PKPVMVSRFSLTENQVDAILNLRLRS 438
             K  +V +      + D +   +   
Sbjct: 1104 RKAAIVEQLIKMSFKPDPVKKWKEER 1129


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 164/486 (33%), Gaps = 77/486 (15%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQ 107
           FKP  R+++    +          + A  V E+    + HG+Q++  ++V LAQ F    
Sbjct: 1   FKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSA--YHHGEQALMMTIVNLAQNFVGSN 58

Query: 108 RYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
              L+   G FG     G  AA+ RY    ++ +A L+   VD++ + F    + +  EP
Sbjct: 59  NINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLY-DDNQRVEP 117

Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225
             +    P +L NG  GI  G A  +P+++ +EI      ++D  +            P 
Sbjct: 118 EWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPM 167

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
            P       + + + ++     G   V               + +TE+P +       E+
Sbjct: 168 LPNYKNFKGTIQELGQNQYAVSGEIFVV----------DRNTVEITELPVRTWTQVYKEQ 217

Query: 286 IAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           + E ++         + D ++   +     +               +  +  ++T    N
Sbjct: 218 VLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCN 277

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
             VL      + +   +  ILKE+   R      R  + +  +    E  K    A   +
Sbjct: 278 SMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGML--GAESTKLNNQARFIL 335

Query: 401 DEIIAIIRNEDKPKP-----------------------VMVSRFSLTENQVD-------- 429
           ++I   I  E++ K                           +    ++NQ D        
Sbjct: 336 EKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGT 395

Query: 430 -------AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
                   ILN+ L SL K +  ++  + D    E   +     S    W     ++   
Sbjct: 396 PSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKR--KSPSDLW---KEDLAAF 450

Query: 483 KEIFSK 488
            E   K
Sbjct: 451 VEELDK 456


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 118/158 (74%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           GNFG+IDGDSAAA RYTEA+M++++  +L+ +D+D VDF   Y+  +SEP V PS+ PNL
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           L NG+SGIAVGMAT+IP H++ E+ +  L L+D+ + S
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDAS 158


>gi|56554393|pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
           Topoisomerase Iv
          Length = 323

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 88/238 (36%), Gaps = 11/238 (4%)

Query: 516 EKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
             E + V ++  G+++     S    +      K+ D L   L  +T D +LL +  G  
Sbjct: 3   ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAXKDTDRLLAXLEXNTKDVLLLFTNKGNY 62

Query: 573 YTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
              P   L     +  G+ I  +I ++ +++I+ A     ++     L V+  G     E
Sbjct: 63  LYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGXVKKTE 122

Query: 628 ESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RG 684
                A    K  T + + +++++  V    G + + +V  N   L F   ++  +  R 
Sbjct: 123 LKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDESEVSIVGVRA 182

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            GV+  + K+G           +  + + +  R   +           R   G ++ +
Sbjct: 183 AGVKGXNLKEGDYIVSGQLITSKDESIVVATQRGAVKKXKLTEFEKATRAKRGVVILR 240



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 69/207 (33%), Gaps = 20/207 (9%)

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKE--PITVVISNRGWIRS-------LKSHSVDL 540
            DLG+       + R ++      + + E     + ++  G ++         + +S  L
Sbjct: 76  KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGXVKKTELKHYKAQRYSKPL 135

Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNH 598
           + ++ K  D +         + + L++ +G A         ++  R  G        L  
Sbjct: 136 TGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDESEVSIVGVRAAGVKGXN---LKE 192

Query: 599 NQDIVT-AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKL- 652
              IV+   +      ++V + +G     + +E    TR  +  + +        ++   
Sbjct: 193 GDYIVSGQLITSKDESIVVATQRGAVKKXKLTEFEKATRAKRGVVILRELKANPHRISGF 252

Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIP 679
           VV    D + +  E   +    +  I 
Sbjct: 253 VVAQDSDTIYLQTEKSFIETIKVGDIR 279


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/125 (55%), Positives = 95/125 (76%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKS
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEA+
Sbjct: 61  ARIVGDVMGKYHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 136 MTQVA 140
           MT++ 
Sbjct: 121 MTKIT 125


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 199/518 (38%), Gaps = 68/518 (13%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           ++ +   V  R  + +    +++S    R+IP   DG KP  R+IIH +    L+     
Sbjct: 338 LDYSKPNVRYRNFVTDCLAMHSISDNL-RSIPSSIDGLKPTQRKIIHTL----LNHSKQE 392

Query: 73  KKSARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAA 127
            K + + G V     + HG+QS+  ++V +AQ F       L+   G FG  ++ G  AA
Sbjct: 393 YKVSSLSGLVTTYAQYHHGEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAA 452

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
             RY   +++ +   +    D   +++ D       EP  F    P +L NG  GI  G 
Sbjct: 453 QARYISTKLSSLTTKLFNEDDLHTLNYLD-EEGYTVEPFWFTPILPLVLINGAEGIGTGW 511

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
           +T +P+ N +EIC+     +       E+  E +      TG I   + +       + +
Sbjct: 512 STQVPNFNPREICQQIKRKLRG-----EEFEELVPWYKGFTGSITAGTNQ------YIAK 560

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA---ELIIAKRIPLLEDIRDE 304
           G F                 + +TEIP +         I    E+   K  P + D+++ 
Sbjct: 561 GSFIQH-----------KNHLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEY 609

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            A     V F     +  ++L + I     ++T   +   VL    G + +   +  IL 
Sbjct: 610 HA--GNKVCFELK--VTDEVLKQDIEKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSEILD 665

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL-NIDEIIAI--------------- 406
           E+   R +    R  + +      +E+++         ID  I +               
Sbjct: 666 EFYQTRIKFYQLRKEYLLSKYQNELELVQSKSKFIEGMIDNSIQLRGLKKMEMCKKLQSL 725

Query: 407 ----IRNEDKPKPVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
               I   +K K   +S+       E Q D +L++ + +  + +    K ++  L  +  
Sbjct: 726 GFKGISKMEKVKSTRISKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQIT 785

Query: 460 KIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRR 496
            ++    + +Q W++   E + E+ ++  + T    +R
Sbjct: 786 ALNK--KTPQQIWSEDLDEFLEELTKVEEQETQEMIKR 821


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 167/440 (37%), Gaps = 47/440 (10%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L  +  +A+S +  +    + ++ S    R+IP + DG KP  R+++    +        
Sbjct: 702  LYTKTTRAISYKEFINLELVLFSNSDNV-RSIPCVLDGLKPGQRKVMFTCFKRNDKREVK 760

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E+    + HG+QS+  ++V LAQ F       L+   G FG     G  +A
Sbjct: 761  VAQLAGSVAEMSA--YHHGEQSLCSTIVNLAQNFVGSNNINLLYPGGQFGTRLAGGKDSA 818

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    M+ +  LI   +D+  ++++   + +  EP+ +    P +L NG+ GI  G 
Sbjct: 819  SPRYIFTMMSALTRLIFHPLDDPLLEYQY-DDNQKIEPLWYLPIIPMVLVNGSEGIGTGW 877

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            +T IP HN ++I      +                        +  E  + +   Y+  R
Sbjct: 878  STKIPLHNPRDIIANLRRM------------------------LNGEEPKVLHPWYKNFR 913

Query: 248  GGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLED 300
            G   V        VG      +  I ++E+P         E   E ++    K+  ++ D
Sbjct: 914  GSVEVVGPQKYLTVGNLSLLENQKIEISELPIGTWTQVYKENTLEPLLHGSEKQKAVISD 973

Query: 301  IRDESAEDVRIVLF-----PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             ++ + +     +        ++    D     +F L+   +   ++        + +  
Sbjct: 974  YKEYNTDTTVRFVVSFLPGEFDKLYAEDGGFHRVFKLTSSISTTCMHAFD-DKNYLRRYE 1032

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              + I +E+   R +   +R ++    +    E  +    A   +++    +  E+K + 
Sbjct: 1033 HANDIFQEYYKIRLDFYHKRKAYLEGMLQ--AEADRLTDQARFIMEKCDRTLVVENKKRK 1090

Query: 416  VMVSRFSLTENQVDAILNLR 435
            VM+        + D +   +
Sbjct: 1091 VMIDELIKRGYRPDPVKEWK 1110


>gi|213579808|ref|ZP_03361634.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 277

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 11/189 (5%)

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           K Y LP     S    G  I  L+ L  N+ I        Y+    + + ++ G      
Sbjct: 2   KVYQLPEA---SRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTA 58

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GK 685
            +E       G   + ++  +++  V   +G D V +     K++ F  D +  M R   
Sbjct: 59  LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTAT 118

Query: 686 GVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           GVR       G   V+   I  G    +      Y +           R   G +  K  
Sbjct: 119 GVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVT 176

Query: 745 PRSGKFLSS 753
            R+G  + +
Sbjct: 177 ERNGSVVGA 185



 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 16/230 (6%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIA 554
           E +    A L     E+     + +  G ++        +  S  + A++  +GD L   
Sbjct: 25  EANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 84

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614
                +D ++L S  GK        + +       ++  I L  +  +V+  +      +
Sbjct: 85  DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG-IKLAGDDKVVSLIIPRGEGAI 143

Query: 615 LVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-MKLVVKVTG-DHVAVVGENRKL 670
           L V+  G        E    +R   G   +KV+     +   V+V   D + ++ +   L
Sbjct: 144 LTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTL 203

Query: 671 LIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
           +   + +I  + R  +GV L    +     G+  V      E L  ID +
Sbjct: 204 VRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGS 253


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/143 (58%), Positives = 112/143 (78%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQGNFG++DGD AAA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTEA+MT++   +L+ +++D +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+
Sbjct: 61  YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 120

Query: 191 IPSHNVQEICEAALALIDNPEIS 213
           IP HN+ E+ +  L L  NP+I+
Sbjct: 121 IPPHNLTEVIDGVLRLSQNPDIT 143


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
           TE+R+++++E++L  + +  VD++  ++   +EP   P++ P++L NGT+GIAVGMAT I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
           P HN+ EI +AA+ L+DNP+  ++ +LE + GPDFPT   I+  +
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPK 165


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 100/144 (69%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
             L +  +K +SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++     G+   
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F  RY LI G GNFG+IDGD  AA 
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 130 RYTEARMTQVAELILQGVDEDAVD 153
           RYTEAR++++A  +L+ +D+D VD
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVD 156


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1221

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 172/472 (36%), Gaps = 34/472 (7%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RA+    DG KP  R+II A
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + E       HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  LMRRSGNEAAKVAQLSGYISE--ASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  A+I         +   +       G I     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSV-VRRLVPWAVGFQGEIRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +   + GR    + VTE+P+        E I+ L     + 
Sbjct: 875  -----------GEFIAVGTYTYCKGGR----VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 297  LLEDIRDESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D    +  D+ + +     N   + +  +     +    T F  N  +  +      
Sbjct: 920  RIADYSGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSPNGTLSPLESDLT- 978

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 +L+     R ++  +R    +  +++ +   K  L    +         N  +  
Sbjct: 979  ----PVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFRAGHIDFANATEAT 1034

Query: 415  -PVMVSRFSL--TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               + S+  L   ++  D IL   +    K     +  ++       E +  
Sbjct: 1035 LEKVCSKLGLVRVDDSFDYILRKPITFYTKTSFENLLKKIAETERRIEALKK 1086


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/136 (58%), Positives = 108/136 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +DGDSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 181 SGIAVGMATSIPSHNV 196
           SGIAVGMAT+IP HN+
Sbjct: 121 SGIAVGMATNIPPHNL 136


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/142 (61%), Positives = 114/142 (80%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRRI++AM+++G+   + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R P +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 173 PNLLANGTSGIAVGMATSIPSH 194
           PNLL NG+SGIAVGMAT+IP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 177/474 (37%), Gaps = 38/474 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL+    RA+    DG KP  R+I+ A
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFALAG-NARALAHAVDGLKPSQRKILWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + EV      HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSA--FHHGEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   +++ +A ++    DE  +D+  T   +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  ++I+     +  +   +       G +     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +     GR    + VTEIP+ +      + I+ L     + 
Sbjct: 875  -----------GEFIAAGSYQYYVDGR----VHVTEIPWTLSIEAFRDHISVLASKDVVQ 919

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ + L     +   +         S++     + +N         + P
Sbjct: 920  RIADYSGANHVDIDLELTNGAMTTYAE-------CESELSLTQRIYINGTVFSPTGVLTP 972

Query: 357  LDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            L+G    +L+     R ++  +R    +  ++  +   K  L    +  E    I N   
Sbjct: 973  LEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDIVNATD 1032

Query: 413  ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                K          ++  D +L   +    K     +  ++       +K+  
Sbjct: 1033 DSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNRKISETEKRIDKLKK 1086


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 177/474 (37%), Gaps = 38/474 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL+    RA+    DG KP  R+I+ A
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFALAG-NARALAHAVDGLKPSQRKILWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + EV      HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  IMRRSGNESAKVAQMSGYISEVSA--FHHGEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   +++ +A ++    DE  +D+  T   +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  ++I+     +  +   +       G +     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +     GR    + VTEIP+ +      + I+ L     + 
Sbjct: 875  -----------GEFIAAGSYQYYVDGR----VHVTEIPWTLSIEAFRDHISVLASKDVVQ 919

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ + L     +   +         S++     + +N         + P
Sbjct: 920  RIADYSGANHVDIDLELTNGAMTTYAE-------CESELSLTQRIYINGTVFSPTGVLTP 972

Query: 357  LDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            L+G    +L+     R ++  +R    +  ++  +   K  L    +  E    I N   
Sbjct: 973  LEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDIVNATD 1032

Query: 413  ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                K          ++  D +L   +    K     +  ++       +K+  
Sbjct: 1033 DSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNRKIGETEKRIDKLKK 1086


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 177/474 (37%), Gaps = 38/474 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL+    RA+    DG KP  R+I+ A
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFALAG-NARALAHAVDGLKPSQRKILWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + EV      HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSA--FHHGEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   +++ +A ++    DE  +D+  T   +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  ++I+     +  +   +       G +     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +     GR    + VTEIP+ +      + I+ L     + 
Sbjct: 875  -----------GEFIAAGSYQYYVDGR----VHVTEIPWTLSIEAFRDHISVLASKDVVQ 919

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ + L     +   +         S++     + +N         + P
Sbjct: 920  RIADYSGANHVDIDLELTNGAMTTYAE-------CESELSLTQRIYINGTVFSPTGVLTP 972

Query: 357  LDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            L+G    +L+     R ++  +R    +  ++  +   K  L    +  E    I N   
Sbjct: 973  LEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDIVNATD 1032

Query: 413  ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                K          ++  D +L   +    K     +  ++       +K+  
Sbjct: 1033 DSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNRKISETEKRIDKLKK 1086


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 177/474 (37%), Gaps = 38/474 (8%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL+    RA+    DG KP  R+I+ A
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFALAG-NARALAHAVDGLKPSQRKILWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + EV      HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSA--FHHGEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   +++ +A ++    DE  +D+  T   +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  ++I+     +  +   +       G +     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +     GR    + VTEIP+ +      + I+ L     + 
Sbjct: 875  -----------GEFIAAGSYQYYVDGR----VHVTEIPWTLSIEAFRDHISVLASKDVVQ 919

Query: 297  LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
             + D    +  D+ + L     +   +         S++     + +N         + P
Sbjct: 920  RIADYSGANHVDIDLELTNGAMTTYAE-------CESELSLTQRIYINGTVFSPTGVLTP 972

Query: 357  LDG----ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            L+G    +L+     R ++  +R    +  ++  +   K  L    +  E    I N   
Sbjct: 973  LEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDIVNATD 1032

Query: 413  ---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                K          ++  D +L   +    K     +  ++       +K+  
Sbjct: 1033 DSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNRKISETEKRIDKLKK 1086


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 172/472 (36%), Gaps = 34/472 (7%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RA+    DG KP  R+II A
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + E       HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  LMRRSGNEAAKVAQLSGYISE--ASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G A++IP  +  ++  A  A+I         +   +       G I     
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAAKSV-VRRLVPWAVGFQGEIRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +   + GR    + VTE+P+        E I+ L     + 
Sbjct: 875  -----------GEFIAVGTYTYCKGGR----VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 297  LLEDIRDESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D    +  D+ + +     N   + +  +     +    T F  N  +  +      
Sbjct: 920  RIADYSGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSPNGTLSPLESDLT- 978

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 +L+     R ++  +R    +  +++ +   K  L    +         N  +  
Sbjct: 979  ----PVLQWHYDRRLDLYKKRRQRNLMLLEQELAREKSTLKFVQHFRAGHIDFANATEAT 1034

Query: 415  -PVMVSRFSL--TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               + S+  L   ++  D IL   +    K     +  ++       E +  
Sbjct: 1035 LEKVCSKLGLVRVDDSFDYILRKPITFYTKTSFENLLKKIAETERRIEALKK 1086


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 182/498 (36%), Gaps = 74/498 (14%)

Query: 9   SNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
             T V+ ++    + +     + +  + ++      R+IP+L DG KP  R+++ A  + 
Sbjct: 65  EGTYVDYSINNQCRNLRYFDFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKK 123

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
            L+      + A  V E     + HG+ S+  ++V +AQ F       L+   G FG+  
Sbjct: 124 KLNNELKVAQLAGYVAE--HSAYHHGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRK 181

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             G  A+A RY   ++++    I    D+  + +    + +  EP+ +    P +L NGT
Sbjct: 182 EGGKDASAARYIFTKLSKWTRYIFPEADDPLLTYLY-DDGQQIEPLYYVPIIPMILVNGT 240

Query: 181 SGIAVGMATSIPSHNVQEICEAA-LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            GI  G ++S+P++N ++I       L     I +    +   G  FP      ++  + 
Sbjct: 241 DGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMIPMTPWYKSFKGKIFPIKQKSKKNSTNN 300

Query: 240 VESYRLGR-------------------------------GGFRVRARWCVEEV------- 261
                  +                                         +EE        
Sbjct: 301 GGGNNNRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANY 360

Query: 262 -------GRGSWCIVVTEIPYQVQKSRLIEKIAELI--------IAKRIPLLEDIRDESA 306
                   +    +V+TE+P +       E +   +               + D RD S+
Sbjct: 361 ETFGNWYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSS 420

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEW 364
            +   +             ME I  +  +++    +   L     R+ +      ILKE+
Sbjct: 421 HESVHITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEF 480

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
           +  R E+  +R ++ +  ++    +L+  ++    +  I  +I   +K K  +VS   L 
Sbjct: 481 IPIRLEMYEKRKNYLLSKLNYEKCLLEQKILFLKLV--IQGVIGLSNKSKETLVS--DLK 536

Query: 425 ENQVDAILNLRLRSLRKL 442
           +N + +I   +++ L + 
Sbjct: 537 KNNIKSI--KQVQELTQW 552


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/140 (57%), Positives = 107/140 (76%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/143 (50%), Positives = 108/143 (75%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199
           A  +L+ ++++ VDF D  +  + EP+V PS+FPNLL NG +GIAVGMAT+IP HN+ E 
Sbjct: 62  AMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 200 CEAALALIDNPEISIEKLLEYII 222
            +A   ++DNP+++   L+E + 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 183/481 (38%), Gaps = 54/481 (11%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
            +   S+   ++     +    I  RA+P L DG KP  R ++++  +        FKK+
Sbjct: 2   KIVERSISSYIDNEAKEFTFYVIVNRALPSLIDGLKPSQRFVLYSAIKTC---QCGFKKN 58

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A + G +    +PHG+ S +D   ++A  +   YP++ G+GNFG+     AA  RY   +
Sbjct: 59  AYLCGVLSDYGYPHGETSAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIFCK 118

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           +      I +  D       D      S P  +    P +L NG  GIA   AT+IP H+
Sbjct: 119 LNSNFHDIFKDEDLLL----DNEIVSYSIPKFYLPVIPFVLLNGVKGIASAYATNIPPHD 174

Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
           +  + +  +  +   +    K    +  P F       ++ +          G + +   
Sbjct: 175 IHSVIDECVKYVKTGKCDNPK----VKYPSFIGKVNTPDNEQW------TNEGVYEL--- 221

Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315
                  +G   + + +IP+   + + +    +LI + +I   ++I  E     R V   
Sbjct: 222 -------QGKTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGDFTFR-VTLK 273

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           ++     + +M    +      R  +N  ++++G    ++  +  L+    H RE++   
Sbjct: 274 RDFDTSHENIMAKFDL------RENINPTLVTIGPYSNMVTQEMDLR-IYKHSRELIADF 326

Query: 376 SSFRMQAIDRRVEILKGLL-IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN- 433
            ++R+  +D+R++ +  ++      +   +  IR     K            QV+ ++  
Sbjct: 327 INYRLPIVDQRIQNMIDVIPKKIPELKARVEFIRLARDGKVNFNQPKKAMIKQVEGLMEP 386

Query: 434 -----------LRLRSLRKLEEYQIKSELDNLLAEKEKI------DSLLNSGKQQWNQIA 476
                      + + ++   E  ++  E +  +++ +           L       N + 
Sbjct: 387 ELAIFSDKVVGMPIFNMTDDEIARLNKEYEQAISDLDYWKNTNSKKEYLKDLSTLKNGLK 446

Query: 477 C 477
            
Sbjct: 447 K 447


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 89/113 (78%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
           + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           SAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AA
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAA 118


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 188/500 (37%), Gaps = 68/500 (13%)

Query: 9    SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM-GLD 67
            SN L  +    +     +++  + ++ +   +R+IP + DGFKP  R I++   +     
Sbjct: 803  SNLLEYKPKMQIPYSDFIDKDLIFFS-NVDNDRSIPSMIDGFKPSQRMILYCCFKRGRHS 861

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDG 123
                  + A  V E     + HG+ S+  +++ +AQ F       ++   GNFG     G
Sbjct: 862  KEVKVSQLAGYVSENTD--YHHGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGG 919

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSG 182
               A+ RY    +  +A  I +  D++ + +   Y+++   EP VF    P  + NG+ G
Sbjct: 920  KEHASPRYIFTELHPIANYIFREEDDEILKY--NYDDDMKVEPDVFAPIIPLGIINGSQG 977

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G + ++P HN  ++      L                        I  +    ++  
Sbjct: 978  IGTGFSNNVPPHNPLDVVANLKRL------------------------INEKDPVDMLPW 1013

Query: 243  YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-IIAKRIPLLEDI 301
            Y   +G      +   + + RG +CI   +I            I ++ I+   I   E  
Sbjct: 1014 YNGFKGTIEKNPKATNKYIIRGKYCIDGNKI-----------HIEDIPIVNGWIEPYESK 1062

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             ++  +D + +       +     ++    ++   +   LNM   S G++ +   +  +L
Sbjct: 1063 MEQKEDDGQELQKLYKTGV---GNLDKFLNMTQSLSVTNLNMFN-SKGKMTKYNSISDVL 1118

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL------------NIDEIIAIIRN 409
             E+  +R E+  +R  F    +   ++I    +                 + E+IA +  
Sbjct: 1119 YEFYEYRLEMYQKRKEFFFLKLQNDLDISTYKVKFIREYLAKTIKIAKKKVVEVIAQLET 1178

Query: 410  EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            +  PK     R  +       + ++ + +L   +  ++++ +++     ++    LN+  
Sbjct: 1179 KGYPKMASDHRLPMASRSYRYLTDMSIMTLTDDKIKELENNMEHCQMLYDQY---LNTP- 1234

Query: 470  QQWNQIACEIREVKEIFSKS 489
                    E+ E   ++ K 
Sbjct: 1235 -IKKIWLNELDEFLSMYKKY 1253


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/140 (58%), Positives = 108/140 (77%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 102/131 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/145 (51%), Positives = 102/145 (70%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M  + L     FKKSARIVG+VIG+ HPHGD S+Y++LVR+AQ +  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            +PLI   GN G+ID D AAA RYTE+R+ +++EL+L+ +D   V     +++ + EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 168 FPSKFPNLLANGTSGIAVGMATSIP 192
            P+ FPNLL NG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/134 (50%), Positives = 100/134 (74%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +S I  RA+PD+RDG KPV RRI++ M+E+G+     +KKSARIVGEV+GK HPHGD S+
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           Y+++  +AQ F  RY L+ G GNFG+IDGD  AA RYTEARM+++A  +L+ +++D +D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 155 RDTYNEEDSEPVVF 168
           +  Y++ ++E   F
Sbjct: 121 QRNYDDNENETSSF 134


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 172/472 (36%), Gaps = 34/472 (7%)

Query: 1    MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
            M   N       ++ + K +++   + +  + +AL     RA+    DG KP  R+II A
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 61   MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNF 118
            +     +  A   + +  + E       HG+ S+ ++++++AQ F       L+  +G F
Sbjct: 699  LMRRSGNEAAKVAQLSGYISE--ASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQF 756

Query: 119  GNID--GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
            G+    G+  AA RY   ++++VA L+    D+  +D+      +  EP  +    P LL
Sbjct: 757  GSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYI-VEEGQQVEPNHYVPILPLLL 815

Query: 177  ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR 236
             NG+ GI  G +++IP  +  ++  A  A+I         +   +       G I     
Sbjct: 816  CNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERAKSV-VRRLVPWAVGFQGEIRRGPE 874

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
                       G F     +   + GR    + VTE+P+        E I+ L     + 
Sbjct: 875  -----------GEFIAVGTYTYCKGGR----VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 297  LLEDIRDESAEDVRIVLFP--KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
             + D    +  D+ + +     N   + +  +     +    T F  N  +  +      
Sbjct: 920  RIADYSGANHVDIDVEVAQGAVNTYAECESELGLTQRIHINGTVFSPNGTLSPLESDLT- 978

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
                 +L+     R ++  +R    +  +++ +   K  L    +         N  +  
Sbjct: 979  ----PVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFGAGHIDFANATEAT 1034

Query: 415  -PVMVSRFSL--TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
               + S+  L   ++  D IL   +    K     +  ++       E +  
Sbjct: 1035 LEKVCSKLGLVRVDDSFDYILRKPITFYTKTSFENLLKKIAETERRIEALKK 1086


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 21/225 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           ++T +  HN  E+ +A++ ++     +        I PDF T GI
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFT--------IYPDFQTAGI 254


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 21/225 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           ++T +  HN  E+ +A++ ++     +        I PDF T GI
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFT--------IYPDFQTAGI 254


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 21/225 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           ++T +  HN  E+ +A++ ++     +        I PDF T GI
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFT--------IYPDFQTAGI 254


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 21/225 (9%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
           ++T +  HN  E+ +A++ ++     +        I PDF T GI
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFT--------IYPDFQTAGI 254


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/130 (60%), Positives = 101/130 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 202/534 (37%), Gaps = 41/534 (7%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +     +   ++      I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYY----SYGTYDISEQRNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNSYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             +   +    ++       +   +  E   + +          E+   +KA ++
Sbjct: 1130 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/136 (55%), Positives = 104/136 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++ M+EMGL     +KKSAR+VGEV+GK HPHGD SVYD++VR+AQ +  RY L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
            GQGNFG++DGD  AA RYTEARM +++E +L  +D++ VD +  +++   EP V P++ 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 173 PNLLANGTSGIAVGMA 188
           PNLL NG +GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/143 (49%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +L+ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 82/140 (58%), Positives = 108/140 (77%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           E R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 193 SHNVQEICEAALALIDNPEI 212
            HN+ E+    LA ID+ +I
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/143 (48%), Positives = 102/143 (71%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 147/409 (35%), Gaps = 64/409 (15%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                 ++ ++  + +   + +  + ++++    R+IP + DGFKP  R+I++   +  L 
Sbjct: 708  EPGVHLDPDLSIIPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLR 766

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  + A  +GE     + HGDQS+  S++ LAQ F       L+   G FG+    G
Sbjct: 767  SEIKVSQLAGYIGE--HSAYHHGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGG 824

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A+A RY    ++++ +                                        GI
Sbjct: 825  KDASAARYIFTDLSKITKKNF----------------------------------SCQGI 850

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IP  N  +I      L+D       ++ E I       G I            
Sbjct: 851  GTGWSTNIPPFNPVDIVANIRRLMDGQ-----EMEEMIPWYRGWNGSI------------ 893

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--AKRIPLLEDI 301
                   + R    +E++      I +TEIP +     + E +   I    K+   ++D+
Sbjct: 894  -TKISADKFRMEGNIEQIDD--ETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 950

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGI 360
             ++   D++ V+      +   L M        + T    NM       ++ +   ++ I
Sbjct: 951  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1010

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
            ++++   R +   RR     + +  ++E +         I E    + N
Sbjct: 1011 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNN 1059


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/143 (48%), Positives = 101/143 (70%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            LI   GN G+ID D  AA RYTEA+++Q++E +++ ++++ V F   Y++   EP+V P
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 170 SKFPNLLANGTSGIAVGMATSIP 192
           ++FPNLL NG++GI+ G AT IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/131 (58%), Positives = 102/131 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
             + +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   WAMIWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 201/534 (37%), Gaps = 41/534 (7%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYYSYGTYVISEQ----RNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNTYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             +   +    ++       +   +  E   + +          E+   +KA ++
Sbjct: 1130 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/131 (59%), Positives = 104/131 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 87/107 (81%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL YA+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           HGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 102/130 (78%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           SAAA RYTE R+ ++A  ++  ++++ VD+ D Y+  +  P V P+K PNLL NG+SGIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 185 VGMATSIPSH 194
           VGMAT+IP H
Sbjct: 121 VGMATNIPPH 130


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 201/534 (37%), Gaps = 41/534 (7%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +     +   ++      I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYY----SYGTYDISEQRNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNSYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             +   +     +       +   +  E   + +          E+   +KA ++
Sbjct: 1130 ARELLIAAKTHRVEKIKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 191/511 (37%), Gaps = 56/511 (10%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  LKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A ID       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYIDKNN-PKHELLHYAIDHKITVLPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYYSYGTYVVSEQ----RNMITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + + +   + + + + +  
Sbjct: 954  SNRMAFIEEIVDYSSSETIEILVKLKPNSLSRIIEEFKETEEQNSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RR++  +R       +  R+ I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNSYYEILYAWLPYRRDLYQKRLMRERAVLKLRI-IMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKPVMV-SRFSL--------TENQVDAILNLRLRSLRKLEEYQIKSE 450
                + +   ED+ +   + S            T  +   I  L  ++L+    Y +  +
Sbjct: 1070 ESADLNLSHYEDEKEAGRILSEHGFPPLNQSLITSPEFATIEELNQKALQGCYTYILSLQ 1129

Query: 451  LDNL--------LAEKEKIDSLLNSGKQQWN 473
               L        + + +K+ + L+  +Q   
Sbjct: 1130 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQ 1160


>gi|87240782|gb|ABD32640.1| WD40-like [Medicago truncatula]
          Length = 398

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 32/281 (11%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           + S L+S       I  E  ++K  F+        R +  E +  D       +I  E +
Sbjct: 5   LKSQLDSS---IQVIEQEAIDLKNKFASP------RRSILEDTD-DGQLEDIDVIPNEEM 54

Query: 521 TVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + +S +G+++ +K          ++  S    K  DS+   +     D +L  S  G  
Sbjct: 55  LLTLSEKGYLKRMKPSTFNLQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTV 114

Query: 573 YTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVE 627
           Y+  A  +   S    G  +  ++ L+  + I +      +     LL+++ +G    V 
Sbjct: 115 YSARAYKIPECSRTASGTPLVQILSLSDGERITSIIPVSEFTDDQFLLMLTMQGYIKRVP 174

Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GK 685
            +   +    G   +++   +++K V   T D  VA+   N  +++    QI  + R  +
Sbjct: 175 LNSFSSIRSSGIIAIQLVPGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTLGRNTR 234

Query: 686 GVRLQSYKDGGI---SDVICFKICEGLTWID----SAGRSY 719
           G      K+G      D+I   +   L  I     S G+SY
Sbjct: 235 GALAMRLKEGDRMASVDIIPAAMWNNLETISKLPESNGKSY 275



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 47/248 (18%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHA 557
               + +  +    +   ++++ +G+I+ +  +S        + A+    GD LK     
Sbjct: 144 ERITSIIPVSEFTDDQFLLMLTMQGYIKRVPLNSFSSIRSSGIIAIQLVPGDELKWVRCC 203

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ-------DIVTAFVYD- 609
              D + + S +G         +   R  G   +  + +   +       DI+ A +++ 
Sbjct: 204 TNDDFVAMASHNGMVILSLCIQI---RTLGRNTRGALAMRLKEGDRMASVDIIPAAMWNN 260

Query: 610 ---------------STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652
                              LL +S  G+   V  S     +  R G    K S+E+++  
Sbjct: 261 LETISKLPESNGKSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAA 320

Query: 653 VVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG---ISD 699
           V  V         + + V +V ++  +    +  I   SR  +GV L      G    + 
Sbjct: 321 VFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTAS 380

Query: 700 VICFKICE 707
           +I    CE
Sbjct: 381 LISATECE 388


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +LNS ++    I 
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLHILNSPERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +   +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELEAINTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 83  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 193/499 (38%), Gaps = 63/499 (12%)

Query: 3    VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            +D  +    L +  +K V +   +++  + ++++   ER+IP + DGFK   R+I+ +  
Sbjct: 775  MDQYTPGAYLDQYGIKKVKITDFIDKELILFSIADC-ERSIPSIVDGFKTSQRKILFSCF 833

Query: 63   EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN 120
            +  L       +    V E     + HGDQS+  +++ LAQ +       ++   G FG+
Sbjct: 834  KRNLKKEIKVAQLIGYVSE--QSAYHHGDQSLASAIIGLAQTYVGANNINVLYPGGGFGS 891

Query: 121  I--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
                G  ++A RY   R+ ++A  +    D   +    T + +  +P  +    P +L N
Sbjct: 892  RLAGGKDSSAPRYINTRLEEIARTLFPEEDHALLSHL-TDDGKRVQPKWYIPVIPMILVN 950

Query: 179  GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238
            G+ GI  G +++IP++N +++ E    L     I  ++L   +       G I +++ + 
Sbjct: 951  GSKGIGTGWSSTIPNYNPRDLIENMKLL-----IEGKELKPIVPWYRGFKGTIELQTGK- 1004

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
                       F  +  W         + + +TE+P +   +       +L+     P  
Sbjct: 1005 --------TSNFVAKGVWR----KLDEYRLEITELPIESWTNDFK----DLVQNLIDPQG 1048

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            +  R E+ E ++ V   K        +++      D +     +  V SM     V  + 
Sbjct: 1049 KQKRKEAKEKIKQV---KKGKATSTKVVKRKKKDEDDDEVVIADPIVKSMSNQGTVGSIH 1105

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             I++         + +      +  +  + +           DE   I + E        
Sbjct: 1106 FIIETLKPVDEIDVNKTFKLEKKLAETNMTVF----------DEEGRIKQFET------- 1148

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEE---YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ- 474
                 T + +     +RL   +K ++    +++ E   L  +   I +++N      N  
Sbjct: 1149 -----TTDIIKYFFKIRLEYYQKRKDYLCDKLEEEHRRLSNKARFILAVVNKELVIANVK 1203

Query: 475  ---IACEIREVK-EIFSKS 489
               +  +++E+K + FSK 
Sbjct: 1204 RLDLVKKLKEMKFDQFSKK 1222


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 190/496 (38%), Gaps = 40/496 (8%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +     +   ++      I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYY----SYGTYDISEQRNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNSYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQ 474
             +   +    ++    
Sbjct: 1130 ARELLIAAKTRRVEKI 1145


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 104/157 (66%), Gaps = 5/157 (3%)

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVES 242
           MAT+IP HN++E+ +A    ++N +   E+    ++  + GPDFPT G+IV S +   ++
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGS-QGTADA 119

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           Y+ GRG  R+R    VEE  RG   +V+TE+PYQV  
Sbjct: 120 YKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNH 156


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 150/415 (36%), Gaps = 50/415 (12%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
               T  +   K ++ +  + +  + ++                    R  +    +  L 
Sbjct: 656  EPGTCRDHEAKLINYKDFVNKELILFS--------------------RADLFGSFKKKLY 695

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDG 123
                  +    V E     + HG+QS+  +++ +AQ F       L+   G FG  N+ G
Sbjct: 696  KEIKVAQFIGYVSE--HSAYHHGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNLGG 753

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    ++ V   +    D+  +++    + +  EP  +    P +L NG+ GI
Sbjct: 754  KDHASARYIYTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWYMPIIPLVLVNGSEGI 812

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G ++ IP++N +EI      L++      E+L+          G I   ++E      
Sbjct: 813  GTGWSSYIPNYNPREIIANVRRLLNG-----EELVPMDPWYKGFRGTIEKSAKEG----- 862

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL---IEKIAELIIAKRIPLLED 300
                G         ++E         +TE+P +         +E I +     + PL+ED
Sbjct: 863  ----GYIVNGTVTEIDE-----QTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIED 913

Query: 301  IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-LNMNVLSMGRVPQVMPLDG 359
             R    + +  +           +L E +F    + +     NM++       +    + 
Sbjct: 914  FRQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQ 973

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            IL+E+   R +   +   + +  ++R + IL   +   L +     I+ N  K +
Sbjct: 974  ILEEFFPLRLDYYEKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRKKAE 1028


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/165 (46%), Positives = 108/165 (65%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M  +GL    AFKKSAR+VG+VIGK HPHGD S+Y++L+R+AQ +    PL+   GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            G+ID D AAA RYTE R+  V  L+L+ +++  V+F   +++ + EPVV P  FPNLL 
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
           NGT GIA G AT IP HN+ E+ +A +  + N      K+ + I 
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIK 170


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 152/409 (37%), Gaps = 28/409 (6%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            N +  V+     +     + +  + ++++    R+IP L DG KP  R+++ A  +  L 
Sbjct: 641  NHDLYVDHTKSELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLK 699

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                  +    + E     + HGD S+  +++ +AQ F       L+  +G FG+  + G
Sbjct: 700  QEIKVVQLGGYIAE--HSAYHHGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGG 757

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
               A+ RY    + ++   I    D+  + + +  + +  EP  +    P  L NG  GI
Sbjct: 758  KDHASARYISTALNKITRYIFPEQDDHLLKYLE-DDGQMVEPEYYVPIIPMSLVNGAEGI 816

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +TSI ++N  ++ +     ++  +              F        + + I+E+ 
Sbjct: 817  GTGWSTSIQNYNPIDLVQQIKNRLNGEQ--------------FQPMAPFYRNFDGIIENL 862

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
              G    +        +    +  + + E+P +       E + + +  +    + D+R+
Sbjct: 863  PNGNCVIKGLI-----DCNEATDIVTIRELPIKKWTRNYKEWLDKEMAEEG-SQIVDLRE 916

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
               +               DL     +            +   S  ++ +   +  I++E
Sbjct: 917  YHTKYKIHFEIQMVDGFVQDLKNPLEYFKLSSPASCSNMVLFDSNSKIKKYECVQDIMEE 976

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +   R E   +R  + +  +DR V++L   L     +      +RN  K
Sbjct: 977  FYQVRLEFYHKRKDYLISKLDREVQLLDNKLKFIKMVISEEIKLRNVKK 1025


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +L S ++    I 
Sbjct: 4   REGRYYLTEQQAQAILDLRLQKLTGLEHERLLDEYKELLAQIAELLYILESPERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +K  +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELEAIKAQYSDE-----RRT---EITVNTADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKV 656
            DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+V  
Sbjct: 86  ADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVAN 145

Query: 657 TGDHVAVVGENRKL 670
           T D +       +L
Sbjct: 146 THDTILCFSSRGRL 159


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 103/131 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SG 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 184 AVGMATSIPSH 194
           AVGMAT+IP H
Sbjct: 121 AVGMATNIPPH 131


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 80/118 (67%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +    +   ++  YL YA+S I  RAIPD+RDG KPV RRI++AM E  +     +KKSA
Sbjct: 4   IIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKKSA 63

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           R VG VI K HPHGD SVYD+LVR+AQ F  RYPL+ GQGNFG+IDGD  AA RY   
Sbjct: 64  RTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRYCVV 121


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 87/500 (17%), Positives = 178/500 (35%), Gaps = 55/500 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  L  +++K VS    +++  + +       R++P + DGF    R+ ++   +     
Sbjct: 74  SGDLYAKDIKEVSYHDFVKKDLIRFRNMEYV-RSVPSIMDGFNERQRKTLYTCIKRDYKE 132

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF--GNIDGD 124
                + A  V E      P     +  ++  LAQ F       L+   G F   +++  
Sbjct: 133 EINVAQLAVSVAENCAYYQP---DLLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESK 189

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +  Y    M+++   I    D+  + +R T   +  EP  F    P +L NG +GI 
Sbjct: 190 DVGSPDYIFTMMSKITRKIFHPRDDPLLKYR-TDGNQSIEPEYFAPIIPMVLVNGANGIG 248

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G  T IP  N +EI E    +++  +            P  P       + E I +   
Sbjct: 249 TGFKTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLNF 298

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
           +  G   V +   +E          +TE+P  V      + + E ++    +  P++ D 
Sbjct: 299 VISGELAVLSPTTIE----------ITELPVDVPTENYKKSVLEKLLCGSEECPPIITDY 348

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
           ++   ++    +      +   +  E       +++ + L   +L  S G +     +D 
Sbjct: 349 QEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDD 408

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           I+ E+   R E+  +R  +    ++     L         I   + +I + +K   V++ 
Sbjct: 409 IMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNFLTEISSKV-LIVDSEKKFDVLLE 467

Query: 420 RFSLTENQVDAILNLRLRS--------------LRKLEEYQIKSELDN--LLAEKEKID- 462
                    D ++    +S              L +L      +E     L  + ++I  
Sbjct: 468 ELRRRNYAPDPLIAWEKKSNCDVGVANVGCYQYLHQLPIRFQTNEGKQAYLAKKIKEIRE 527

Query: 463 -SLLN--SGKQQWNQIACEI 479
             LL+  S +  W +   E+
Sbjct: 528 CELLSDPSPEDLWRRDLEEL 547


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  V+E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELVREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
            saltans]
          Length = 1247

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 194/493 (39%), Gaps = 24/493 (4%)

Query: 13   VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA-A 71
            ++   K +++   +++  + +A +    RA+P   DG KP  R+I+ +    G    +  
Sbjct: 666  LDRRQKMLTIPTFVDKELIHFANAGNL-RALPSAVDGLKPSQRKILWSCFRRGNANESLK 724

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDG--DSAA 127
              + +  + EV      HG+ S+  +++++AQ +       L+  +G FG+        A
Sbjct: 725  VSQLSGYISEVSA--FHHGEMSLQQTIIKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHA 782

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            A RY   +++ +A LI    D++ + F +    +  EP  +    P LL NG+ GI  G 
Sbjct: 783  AARYIFTKLSPLARLIFPKEDDELLQFVE-DEGKYVEPRFYVPIIPMLLVNGSVGIGFGF 841

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
            A ++  H+  ++      ++     +    LE +        G +V+      E   +  
Sbjct: 842  ACTVQMHHPLDVVTVVRRMMRKNTPTQA--LEGLRPWAVGYSGSVVQKTTVDEEGREVVS 899

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
                   R+   +V +G   + V E+P+     +L  ++A+L    ++  + D    +  
Sbjct: 900  TTHVAMGRFTTRKV-KGFPVVRVEELPWDRAIEQLRGRVAKLAEESKVLRIADYSGANHV 958

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            D  +VL   +    P  + +   + S++     +    + +  + +   ++ I++     
Sbjct: 959  DSDVVLA-ADSFASPREIEKDFLLTSNVANNAAVYNPEMVLSPLGE--SVESIVQWHYEQ 1015

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---- 423
            R  +  +R   ++  ++ +++ LK  L     +       R       ++     L    
Sbjct: 1016 RLAMYTKRKERQLLLLNTQLKKLKSTLTFTETLRSGDLDFRKMADENALVKQCSELKLHR 1075

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              +  D +    +         ++K ++++  +  + ++S   S  + W     ++   +
Sbjct: 1076 ENDSFDYLTRRPVTYFTNNNVEKLKRDIEHCKSSIKSLES--KSEVELWE---TDLAAFE 1130

Query: 484  EIFSKSTDLGRRR 496
            + F+   D    R
Sbjct: 1131 KAFTAHEDALLLR 1143


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 201/534 (37%), Gaps = 41/534 (7%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYYSYGTYVISEQ----RNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVRIVLFPKNRS------------LDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +   +L     +             + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNTYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNQTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             +   +    ++       +   +  E   + +          E+   +KA ++
Sbjct: 1130 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +LNS ++    I 
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILNSPERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +   +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELEAIDTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 EYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       SE  A  R  +GK+  ++  E+   +L+
Sbjct: 83  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRGGRGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 201/534 (37%), Gaps = 41/534 (7%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    +V+ +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 667  GVVPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 725

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 726  VKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 783

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 784  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 840

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 841  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNN-PKHELLHYAIKHKITILPL 899

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 900  RPSNYNFKGHLKRFGQYYYSYGTYVISEQ----RNIITITELPLRVPTVAYIESIKK--S 953

Query: 292  AKRIPLLEDIRDESAEDVRIVLFPKNRS------------LDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +   +L     +             + D +   + + + + +  
Sbjct: 954  SNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSHL 1013

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RRE+  +R   R  A+ +   I++  ++ Y+N
Sbjct: 1014 NF---VKPKGGIIEFNTYYEILYAWLPYRRELYQKR-LMREHAVLKLRIIMETAIVRYIN 1069

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
                + +   ED+ +   ++S           I++    S+ +L +  ++     +L+ +
Sbjct: 1070 ESAELNLSHYEDEKEASRILSEHGFPPLNQTLIISPEFASIEELNQKALQGCYTYILSLQ 1129

Query: 459  EKIDSLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             +   +    ++       +   +  E   + +          E+   +KA ++
Sbjct: 1130 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  ++E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELIREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              DES      ++    R  +P +++  +F  + ++  F + M  L   + P+++ L  
Sbjct: 3   GFTDESDRKGMRIVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQ-PRILNLKE 61

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416
           IL  +L H+++V+ RR+ + +   + R  IL+GL IA  N+DE+I IIR     D  +  
Sbjct: 62  ILFYYLEHQKDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREG 121

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
           ++SRF LTE Q  AIL++RL+ L  LE  +I  E   L
Sbjct: 122 LMSRFGLTEKQAQAILDMRLQRLTALEREKIDEEYREL 159


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 192/511 (37%), Gaps = 56/511 (10%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    + + +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 666  GVVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 724

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 725  LKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 782

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 783  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 839

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 840  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNN-PKHELLHYAIERKITVLPL 898

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 899  RPSNYNFKGHLKRFGQYYYSYGTYVVSEQ----RNIITITELPLRVPTVAYIESIKK--S 952

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 953  SNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1012

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RR+V  +R       +  R+ I++  ++ Y+N
Sbjct: 1013 NF---VKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLMRERAVLKLRI-IMETAIVRYIN 1068

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSL--------TENQVDAILNLRLRSLRKLEEYQIKSE 450
                + +   ED+ +   ++S            T  +  +I  L  ++L+    Y +  +
Sbjct: 1069 ESADLNLSHYEDEKEASRILSEHGFPPLNQSLITSPEFASIEELNQKALQGCYTYILSLQ 1128

Query: 451  LDNL--------LAEKEKIDSLLNSGKQQWN 473
               L        + + +K+ + L+  +Q   
Sbjct: 1129 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQ 1159


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V   R+ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  V E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELVDEQFGDE-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 192/511 (37%), Gaps = 56/511 (10%)

Query: 2    GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            GV  ++ + T    + + +     L+    AY L  I ER IP+  DG     R+I+   
Sbjct: 666  GVVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAGG 724

Query: 62   SE--MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ---PFVQRYPLISGQG 116
             +     +      +    V + +   + HGD S+  S+++ AQ        YP+  G G
Sbjct: 725  LKCFASNNRERKVFQFGGYVADHM--FYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIG 782

Query: 117  NFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY---NEEDSEPVVFPSK 171
            +FG  ++ G  A + RY      Q+A   ++ +      +   Y   + + +EP  +   
Sbjct: 783  SFGSRHLGGKDAGSPRYISV---QLASEFIKTMFPAEDSWLLPYVFEDGQRAEPEYYVPV 839

Query: 172  FPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGI 231
             P  +    +  + G   +  +  +++I     A +D       +LL Y I        +
Sbjct: 840  LPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNN-PKHELLHYAIERKITVLPL 898

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
               +        R G+  +        E+       I +TE+P +V     IE I +   
Sbjct: 899  RPSNYNFKGHLKRFGQYYYSYGTYVVSEQ----RNIITITELPLRVPTVAYIESIKK--S 952

Query: 292  AKRIPLLEDIRDESAEDVR------------IVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + R+  +E+I D S+ +               ++     + + D +   + + + + +  
Sbjct: 953  SNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHL 1012

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                 V   G + +      IL  WL +RR+V  +R       +  R+ I++  ++ Y+N
Sbjct: 1013 NF---VKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLMRERAVLKLRI-IMETAIVRYIN 1068

Query: 400  IDEIIAIIRNEDKPKP-VMVSRFSL--------TENQVDAILNLRLRSLRKLEEYQIKSE 450
                + +   ED+ +   ++S            T  +  +I  L  ++L+    Y +  +
Sbjct: 1069 ESADLNLSHYEDEKEASRILSEHGFPPLNQSLITSPEFASIEELNQKALQGCYTYILSLQ 1128

Query: 451  LDNL--------LAEKEKIDSLLNSGKQQWN 473
               L        + + +K+ + L+  +Q   
Sbjct: 1129 ARELLIAAKTRRVEKIKKMQARLDKVEQLLQ 1159


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 150/412 (36%), Gaps = 34/412 (8%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
           S  L  +++K VS    +++  + +       R++P + DGF    R+ ++   +     
Sbjct: 257 SGDLYAKDIKEVSYHDFVKKDLIRFRNMEYV-RSVPSIMDGFNERQRKTLYTCIKRDYKE 315

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNF--GNIDGD 124
                + A  V E      P     +  ++  LAQ F       L+   G F   +++  
Sbjct: 316 EINVAQLAVSVAENCAYYQP---DLLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESK 372

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
              +  Y    M+++   I    D+  + +R T   +  EP  F    P +L NG +GI 
Sbjct: 373 DVGSPDYIFTMMSKITRKIFHPRDDPLLKYR-TDGNQSIEPEYFAPIIPMVLVNGANGIG 431

Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
            G  T IP  N +EI E    +++  +            P  P       + E I +   
Sbjct: 432 TGFKTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLNF 481

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDI 301
           +  G   V +   +E          +TE+P  V      + + E ++    +  P++ D 
Sbjct: 482 VISGELAVLSPTTIE----------ITELPVDVPTENYKKSVLEKLLCGSEECPPIITDY 531

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDG 359
           ++   ++    +      +   +  E       +++ + L   +L  S G +     +D 
Sbjct: 532 QEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDD 591

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
           I+ E+   R E+  +R  +    ++     L         I   + I+ +E 
Sbjct: 592 IMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNFLTEISSKVLIVDSEK 643


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +LNS ++    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLHILNSPERLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            +   +S       RRT   E++        + +I +E + V +S++G+++         
Sbjct: 68  AINTQYSDG-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 120 QRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 83  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + LTE Q  AIL+LRL+ L  LE  ++  E  +LL +  ++  +LNS ++    I 
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLEQIAELLHILNSPERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +   +S       RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELEAINTQYSDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  +GK+  ++  E+   +L+
Sbjct: 83  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/129 (58%), Positives = 98/129 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 194 HNVQEICEA 202
           HN+ E+   
Sbjct: 121 HNLTEVING 129


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L+S ++    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSSERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELMRDQFGD-----DRRT---EITANSADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 EYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       SE  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 106/144 (73%), Gaps = 1/144 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           RYPL+ GQGN+G   D  S AA RYTE+R+ ++A+++L  + +  VD++  ++    EP 
Sbjct: 61  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQ 120

Query: 167 VFPSKFPNLLANGTSGIAVGMATS 190
             P++ P++L NGT+GIAVGMAT 
Sbjct: 121 YLPARLPHILLNGTTGIAVGMATK 144


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/128 (56%), Positives = 100/128 (78%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FPSKFPNL 175
            P+K PNL
Sbjct: 121 MPTKIPNL 128


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V   ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  V+E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELVREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 99/127 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 196 VQEICEA 202
           + E+   
Sbjct: 121 LTEVING 127


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +LNS  +    I
Sbjct: 3   VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILNSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  V+E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELVREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  V+E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELVREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSSDRLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  ++E F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELIREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 EYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T D +       +L
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 159


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 16/169 (9%)

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           V    + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I
Sbjct: 3   VRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVI 62

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--- 532
             E+  ++E F        RRT   E++        + +I +E + V +S++G+++    
Sbjct: 63  REELELIREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPL 114

Query: 533 -----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                 +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 115 SEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I 
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMKVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELMRDQFGDE-----RRT---EITANSADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 123/318 (38%), Gaps = 34/318 (10%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           +  ++ +     + +  + ++++    R+IP + DG KP  R++I    +          
Sbjct: 29  DHRIEEIPYSEFINKELILFSMADNV-RSIPSVADGLKPGQRKVIWGCFKRNFKKEIKVM 87

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GDSAAAY 129
           +    V E    ++ HG+QS+  ++V LAQ F       L+   G +G  D  G   A+ 
Sbjct: 88  QLVGYVSE--KAVYHHGEQSLMMTIVNLAQDFVGSNNINLLMPNGQYGTRDQGGKDHASA 145

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY     + +A  I    D+  +  +   N    EP  +    P +L NG  GI  G +T
Sbjct: 146 RYINTLPSLMARTIFHQDDDVLLTPQKDENH-IIEPEWYMPVLPMVLINGAEGIGTGWST 204

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           +IP +N ++I +    L++      E+++          G +   S+       +    G
Sbjct: 205 NIPCYNPRDIVDNLKRLMNG-----EEVVPMHPWWRGFKGEVKFVSKN------KYDVTG 253

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIRDESAE 307
              +              + +TE+P          ++  +++ ++     +++ ++  A 
Sbjct: 254 IATKI---------DDSTVEITELPIHKWTQNFKAELEAMMVGEKGAEGSIKNYQEHHAN 304

Query: 308 DVRIVLFPKNRSLDPDLL 325
                +      +DP  L
Sbjct: 305 QDVHFVI----QMDPKEL 318


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 13/196 (6%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
            +    E+ +  V      ++ +L YA   I ERA+P + DGFKPV RRI+H++ E+   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSA 126
               + K A +VG  +   HPHGD S+ D++V++ Q    R  LI  QGN+GNI  GDSA
Sbjct: 106 -DGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RY EAR+++ A  +L        D+  +Y+   +EP   P KFP LLA+G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 187 MATSIPSHNVQEICEA 202
           ++T +  HN  E+ +A
Sbjct: 218 LSTKVLPHNFNELIDA 233


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I  E+ 
Sbjct: 8   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELE 67

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            V+E F        RRT   E++        + +I +E + V +S++G+++         
Sbjct: 68  LVREQFGDK-----RRT---EITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEA 119

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
            +      SA   KE D +   L A+T D IL  S+ G+ Y++ 
Sbjct: 120 QRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 614 LLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLVVKVTGDHVAVVGENRKL 670
           ++ +S +G       SE  A  R  KGK+  ++  E+   +L+V  T DH+       ++
Sbjct: 100 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 159


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I 
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELMRDQFGDE-----RRT---EITANSADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent virus]
          Length = 1113

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 171/450 (38%), Gaps = 43/450 (9%)

Query: 15   ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
            E V  + +   +    + ++    + R++    DGFK   R+II+A+ +        F K
Sbjct: 669  EAVIDLKISDFMHHEMIKFSYEDCR-RSLASCIDGFKESQRKIIYAVRKKFRSNSTEFIK 727

Query: 75   SARIVGEVIGKL-HPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAY 129
             A++ G V  +  + HG+Q++ +++V+ AQ F       L+   G FG     G  +AA 
Sbjct: 728  VAQLSGYVAEQTDYKHGEQNLCETIVKFAQDFVGANNVQLLEPDGQFGTRLEGGKDSAAP 787

Query: 130  RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
            RY   +  ++   I +  D+  ++        + EPV F    P +L NG+ GI  G + 
Sbjct: 788  RYIYTKPHKILPYIFREEDDPILEQS-----SEGEPVHFVPIIPLVLVNGSVGIGTGWSC 842

Query: 190  SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
             +P +N  E+     A + +     E LL         TG +              G G 
Sbjct: 843  FVPQYNPLELIRYIEARLTSQ--DSEALLPAKPWYRNFTGKVAA-----------TGPGK 889

Query: 250  FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
            F    R    +       + VTE+P  +   R  ++   LI + ++  L +    S  D 
Sbjct: 890  FTTFGRMKQVDAD----TVRVTELPVGMWTDRFKDQCYSLIESGQLQQLVNESTVSKVDF 945

Query: 310  RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHR 368
             +              ++ I  L    T    NM +      + +   +  IL  +   R
Sbjct: 946  TL------------KKLQDISALKLTTTLHTTNMVLFDRENVITKYDTIGDILDHYFQTR 993

Query: 369  REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--TEN 426
                  R +  +  +   ++  +  L     +    + +R +D     ++ + +    +N
Sbjct: 994  LAFYKVRKNHTIAQLKNTIQHNETKLKFIEKVLTDHSFLRQDDAAIVSILEKENFLKVDN 1053

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
              + +LN+ +RS       +++S +  L  
Sbjct: 1054 SYNYLLNISIRSCTATAVEKLQSTIKGLTE 1083


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELIRDQFGDK-----RRT---EITANSADINIEDLINQEDVVVTLSHQGYVKYQPLT 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       ++  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S  +    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSDRLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELIRDQFGDK-----RRT---EITANSADINMEDLINQEDVVVTLSHQGYVKYQPLT 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 EYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       +E  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINMEDLINQEDVVVTLSHQGYVKYQPLTEYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/104 (62%), Positives = 84/104 (80%)

Query: 23  RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82
              L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 104


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 94/125 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 92/140 (65%), Positives = 114/140 (81%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           K VHRRI++AM +M L+  AA +K A++VGEV+G  HPHGD S+Y++LVRLAQ F QRYP
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFGNIDGDSAAA RYTE ++T  A L+L G+D+DAVDFR TY+++D EPVV P+
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 171 KFPNLLANGTSGIAVGMATS 190
            FPNLLANG+SGIAVGM   
Sbjct: 124 GFPNLLANGSSGIAVGMRNQ 143


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 125/292 (42%), Gaps = 29/292 (9%)

Query: 5    NISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
            N     T +++   K + +   + +  + ++++   ER+IP + DG K   R+I+++  +
Sbjct: 777  NDFEPGTYLDQYGAKKIKISEFINKELILFSIADC-ERSIPSIVDGLKISQRKILYSCFK 835

Query: 64   MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI 121
              L       +    V E     + HG+ S+  +++ +AQ +        +   G+FG+ 
Sbjct: 836  RNLKKELRVAQLIGYVSE--HSAYHHGEASLASTIINMAQDYVGSNNINTLYPSGSFGSR 893

Query: 122  --DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
               G  ++  RY    +  +   +    D++ + +    + +  +P  +    P +L NG
Sbjct: 894  LQGGKDSSQPRYIHTCLRDITRTLFHQDDDNLLTYV-NDDGKKVQPKWYMPTIPFVLVNG 952

Query: 180  TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239
            +SGI  G ++SIP++N +++ +    L+D  E++  K            G I  +S ++ 
Sbjct: 953  SSGIGTGYSSSIPNYNPRDLIQCMRDLLDEKEMTDIK-----PWYRGFRGSIEPKSHQT- 1006

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
                 L +G ++  + + +E          VTE+P         E +  L+ 
Sbjct: 1007 ----YLCKGAWKKLSEYELE----------VTELPIGTWTQSFKELLELLVD 1044


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 160/430 (37%), Gaps = 34/430 (7%)

Query: 8    NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
                L +  V  +S    + +  + ++++   ER+IP + DG K   R+I+++  +  L 
Sbjct: 636  EGTYLEQYGVGKLSYTDFINKELILFSIADC-ERSIPSIVDGLKTSQRKILYSCFKRNLK 694

Query: 68   FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DG 123
                  +    V E     + HG+ S+Y +++ +AQ +       L+   G +G     G
Sbjct: 695  KEIKVAQLIGYVSE--HSAYHHGEMSLYSTILGMAQEYIGSNNANLLYPSGAYGTRIQGG 752

Query: 124  DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
              A++ RY   R+T VA  +    D++ +      + +  +P  +    P +L NGT GI
Sbjct: 753  KDASSARYIHTRLTDVARALYHPDDDNILA-CVVDDGKKVQPKHYIPIIPMILVNGTVGI 811

Query: 184  AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
              G +T+IPS+N +++ E    L++       +L          TG I+   +       
Sbjct: 812  GTGWSTTIPSYNPRDLVENMKLLLNKQ-----ELKPIQPWYRGFTGEILESGKGG----Q 862

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             L RG +R  +    E          VTE+P         E + EL         +   +
Sbjct: 863  YLSRGVWRKLSEHSFE----------VTELPINSWTQDYREFLDEL--ETPGTKKKRKEE 910

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            +  +  +               +E IF LS       + +     GR+ +      I + 
Sbjct: 911  KEKKKGKRSSKSTTTKKPKSKTIEKIFKLSSTINETNMVVFD-EEGRIQRFATTQLIQEH 969

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
            +   R +   +R  +  + +    + L       L +      I N  K    +     L
Sbjct: 970  FFGLRMKYYQKRKDYLAEKLSEEFKKLDNKARFILAVINKEIAINNVKK----VDIMKKL 1025

Query: 424  TENQVDAILN 433
             E + D I N
Sbjct: 1026 KEMKFDMIYN 1035


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R+ LTE Q  AIL+LRL+ L  LE  ++  E   LLA+  ++  +L + ++    I 
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLYILANPERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +KE +        RRT   E++        + +I +E +   +S++G+++     
Sbjct: 64  EELEVIKEQYRDE-----RRT---EITHNTADINIEDLICQEDVVATLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 94/125 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 106/135 (78%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++ MSE+G+  G  +KKSARIVG+V+GK HPHGD SVY+++VRLAQ F  RYPL+ 
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           G GNFG+IDGD  A+ RYTEARM +++  +L+G+ ++ VDF D Y+  + EP V PS+FP
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 174 NLLANGTSGIAVGMA 188
           NLL +G+ GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA R
Sbjct: 1   AYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           YTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+
Sbjct: 61  YTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 120

Query: 191 IPSH 194
           IP H
Sbjct: 121 IPPH 124


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 183/501 (36%), Gaps = 41/501 (8%)

Query: 5    NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
            N  N N  +  + ++ ++   + +  + ++      R+IP + DG K   R+++      
Sbjct: 629  NQYNPNANINYSAQSTTIERFIYDDLMHFSNYDNI-RSIPKMLDGQKAGQRKVVFYALNH 687

Query: 65   GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN-I 121
                 A   + A    +V    + HG+ S+ ++++ +A  +      PL+   G FG+  
Sbjct: 688  VGKNEAKVAQMAGTAAQVTQ--YHHGEVSLANTIIGMAATYTGSHNLPLLYPSGQFGSRH 745

Query: 122  DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
              +SAAA RY    ++     +++  D D + + +    +  EP V+    P +L NG +
Sbjct: 746  AKNSAAAPRYIFTHISSFLPRLIKSEDNDVLTY-NVDENKKVEPTVYIPVIPIVLVNGAN 804

Query: 182  GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241
            GI  G    +P +N  E+ +A   + +  E+S  K   ++       G +          
Sbjct: 805  GIGTGWKCDVPQYNPLEVIDACKRMANGGELSTSK---WVPWYVGYNGKM---------- 851

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
                   GF     + V         + VTE+P        IE I  LI  K    +++ 
Sbjct: 852  --EETTDGFNSIGTYEVSG-----NTLTVTELPIGRATEDWIESIQSLIPDK----IKNY 900

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
              E       V    N +   D  + ++ + + ++T         +  ++        I+
Sbjct: 901  --EKNLGPDSVTIKLNLTSPIDDPVATLKLSTKLQTN--RMWLYNAKNKITHYAGPTQII 956

Query: 362  KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418
            +E    R ++       +++    ++++L   +   +   E    I         + +  
Sbjct: 957  QEHARERLKLYEASRISQIEKASHKMDLLNNKIRYIMEFIEGKIKIGKMSTSSLNEYLAQ 1016

Query: 419  SRFSLTENQVDAIL-NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ--WNQI 475
            + +  + N    +  ++    L      ++++++ N+  + + +     +       N +
Sbjct: 1017 NGYLRSNNSFRYLTDDISTGQLTTDNVDKLRNQIRNITTDIDALRETTANKMWITDLNAL 1076

Query: 476  ACEIREVKEIFSKSTDLGRRR 496
              E+ E         D    +
Sbjct: 1077 RKEVDEYIVERLTPLDEDAPK 1097


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 17/257 (6%)

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRIL 564
            +++KE I V+++ +G+++ L  +   L     K        +GD + IAL  +T D + 
Sbjct: 3   DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLF 62

Query: 565 LLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA---FVYDSTCKLLVVSS 619
           ++S +GK Y + A  +   S    G+ I  LI+L   ++I+T            LL+ ++
Sbjct: 63  MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 122

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678
            G     E ++  A   +G   +K++ ++ +     V  D  V  + +     IF+   +
Sbjct: 123 SGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDV 182

Query: 679 PEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
              +RG  GV     K+G +  V    + E    +  +   Y +  N       KRG  G
Sbjct: 183 RLTNRGTQGVCGMKLKEGDL-FVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241

Query: 738 SLVPKGFP-RSGKFLSS 753
               K    ++G  + +
Sbjct: 242 YTSYKKSDKKAGSVVDA 258



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 86/275 (31%), Gaps = 14/275 (5%)

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           + L   +       +  L         ++++  + +   A EI++     +         
Sbjct: 36  KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR--ASKGQNISEL 93

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SVDLSALHFKEGDSL 551
               +          + + +   + +  ++    R   +      S  +  +   + D +
Sbjct: 94  INLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFV 153

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
             A      ++++ LS  G A+   + ++       + +  +  L      V        
Sbjct: 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGM-KLKEGDLFVKVLSVKEN 212

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-----MKLVVKVTGDHVAVVGE 666
             LL+VS  G    +  S+I    R    +      +K     +  +     D + +V +
Sbjct: 213 PYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSK 272

Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
             K L     ++ E  +  +G+++    +  +  V
Sbjct: 273 RSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSV 307


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 79/105 (75%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
             ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K AR+ G+V+
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           GK HPHG+ ++YD+L R+AQP+  R PLI GQGNFG++DGD  A 
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAG 106


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 95/125 (76%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197
           ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGIAVGMAT+IP HN+ 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 198 EICEA 202
           E+   
Sbjct: 121 EVING 125


>gi|108711710|gb|ABF99505.1| DNA gyrase subunit A, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765245|dbj|BAG86942.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 356

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 96/246 (39%), Gaps = 17/246 (6%)

Query: 520 ITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
           + +++S +G+++ +K          ++  S    +  D+    +   T D +L  S  G 
Sbjct: 1   MLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGI 60

Query: 572 AYTLPAGNLLS--GRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626
            Y+  A  +        G  +  L+ L+  + I +      +     L++++  G    V
Sbjct: 61  VYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKV 120

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-G 684
             +   A    G   ++++  +++K V +   D  VA+  +N  +++ + +++  + R  
Sbjct: 121 PLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKT 180

Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
           +GV     K+G     +           ++  R  + S   LL       G+G  VP   
Sbjct: 181 RGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWLLFIADN--GIGKRVPLNA 238

Query: 745 PRSGKF 750
            R G F
Sbjct: 239 FRQGNF 244



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 35/214 (16%)

Query: 517 KEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           ++   V+++  G+I+ +  ++        + ++    GD LK        D + L S +G
Sbjct: 104 EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNG 163

Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK----------------L 614
               +   N L   G      L + L     + +  +  +T                  L
Sbjct: 164 MVI-VNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPWL 222

Query: 615 LVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVAV 663
           L ++  G    V  +        R G    K+  +  +  V  V         + + V +
Sbjct: 223 LFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVL 282

Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           V ++  +    +  I   SR  +GV L   +  G
Sbjct: 283 VSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 316


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L S ++    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELIYILESAERLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F       +RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELIRDQFGD-----QRRT---EITANSADINIEDLINEEDVVVTLSHQGYVKYQPLS 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANSADINIEDLINEEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 102/132 (77%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+Y+++VR+AQ F  RYPL++GQGNFG++DGD AAA RYTEAR+T++   +L+ +++D
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ +  L+L  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 211 EISIEKLLEYII 222
           +I+I +L+E I 
Sbjct: 121 DITINELMEDIQ 132


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E   LL +  ++  +L++  +    I 
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELLRILSNADRLMEVIR 63

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS---- 532
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 64  EELELMRDQFGDE-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLT 115

Query: 533 ----LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
                +      SA   KE D +   L A+T D IL  S+ G+ Y + 
Sbjct: 116 DYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       ++  A  R  KGK+  ++  E+   +L+
Sbjct: 83  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 142

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 143 VANTHDTILCFSSRGRL 159


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 37/325 (11%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + L  +  K++S    + +  + ++ S   ER+IP L DG KP  R+++    +     
Sbjct: 669 EDYLYGQATKSLSYNDFVNKELVLFSNSD-NERSIPCLVDGLKPGQRKVLFCCFKRNDKR 727

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                + A  V E+    + HG+ S+  ++V LAQ F       L+   G FG     G 
Sbjct: 728 EVKVAQLAGSVAEMSA--YHHGEVSLMMTIVGLAQNFVGSNNMNLLQPLGQFGTRLHGGK 785

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE-EDSEPVVFPSKFPNLLANGTSGI 183
            +A+ RY    ++ +A L+   VD++ + +   Y++ +  EP  +    P +L NG  GI
Sbjct: 786 DSASPRYIFTMLSPLARLVFPSVDDNLLKY--NYDDNQRVEPEWYMPIIPTVLVNGAEGI 843

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G A+ IP++N++EI      +++  E            P  P       + E ++++ 
Sbjct: 844 GTGWASKIPNYNIREIVSNIHRMLNGDE----------PLPMLPNYKGFRGTIEHVMDNQ 893

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRIPLL--- 298
            +  G   +     +E          ++E+P +       E + E  L   +++P L   
Sbjct: 894 FMNSGEVAIIDSTTIE----------ISELPVKSWTQTYKENVLEPMLNGTEKVPSLITD 943

Query: 299 --EDIRDESAEDVRIVLFPKNRSLD 321
             E   D +   V  +   K R  +
Sbjct: 944 FREYHTDTTVRFVIKMTEEKLREAE 968


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 252 VRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +RAR  +E +       I+V E+PYQV K+RL+EKIAEL+  K+I  + ++RDES +D  
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
            ++    R    ++++ ++F  + M++ F +NM  L  G+ P+++ L  +L+ ++ HRRE
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQ-PRLLNLKQMLEYFIRHRRE 119

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           V+ RR+ F ++    R  +L+GL +A  NIDE+I
Sbjct: 120 VVTRRTLFELRKARDRAHVLEGLAVALANIDEVI 153


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/132 (53%), Positives = 98/132 (74%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D S+YD++VR+ Q F  RYPL+ GQGNFG++DGD AAA RYTEA+MT++   +L+ +++D
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNP 210
            +DF D Y+  + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+    L L  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 211 EISIEKLLEYII 222
           +++I +L+E I 
Sbjct: 121 DVTIAELMEDIQ 132


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 75/106 (70%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 97/136 (71%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ +
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 163 SEPVVFPSKFPNLLAN 178
            EP V P+ FPNLL N
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 76/106 (71%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           HGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 61  HGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 11/183 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    +
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEI 62

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  + 
Sbjct: 63  DEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAAIV 122

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E F        RR+        D     + +I +E I V IS  G+++  K+        
Sbjct: 123 EKFGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKR 174

Query: 544 HFK 546
             K
Sbjct: 175 GGK 177


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 161/442 (36%), Gaps = 50/442 (11%)

Query: 42   AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL-HPHGDQSVYDSLVR 100
            +IP L DG KP  R+I+  +  +     +   K +++ G V  +  + HG++S+  +++R
Sbjct: 1971 SIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIR 2028

Query: 101  LAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            + Q F      PL+   G FG  +  G+ AA+ RY    +     L+    D+D +  + 
Sbjct: 2029 MGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLL--QK 2086

Query: 157  TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
               E            P +L NGT GI  G +T I + N  +I +     ID+     E 
Sbjct: 2087 NVEEGMVVEPTLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYE- 2145

Query: 217  LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
                I     P         E +  +  +  G  ++      E     ++ I + E+P  
Sbjct: 2146 ----IP----PFYEEFRGKLEVVTPTKFISSGKIQLI---RPERKNASTFSIEIVELPIG 2194

Query: 277  VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
            +  S+  EK+++++    +    +   E     RI L  K  S         +     + 
Sbjct: 2195 IWTSKYKEKLSKIVETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLR 2254

Query: 337  TRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR---------- 385
            T    N  +    G + +   +  I  E+   RR++  +R   + +  +           
Sbjct: 2255 TSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLN 2314

Query: 386  ----------------RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
                            R ++ + L      +D +  I +N  K   +    F     Q +
Sbjct: 2315 FIEMVTNGTIEIRSMGRNQLEEKLQEMGFRVDPMATIAKNSKKVNLINYEDFQYLNFQAN 2374

Query: 430  --AILNLRLRSLRKLEEYQIKS 449
               +L + +  L   E  +++ 
Sbjct: 2375 YGYLLEMPVSRLTSDEMKRLEE 2396


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|258611538|ref|ZP_05711544.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
 gi|258601051|gb|EEW14376.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
          Length = 334

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 16/267 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHA 557
           +   A+     + ++  E + V ++  G+++     S   S    L  KE D        
Sbjct: 2   QAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKM 61

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQDIVTAF---VYDST 611
           ++ D +LL ++ G     P   L   R    G+ +  L  DL+  ++I +A     +   
Sbjct: 62  NSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEE 121

Query: 612 CKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
            + L V+  G       +        K    +K+  ++++  V  + G + + +  +N  
Sbjct: 122 KRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGY 181

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            L +SI +IPE   R  GV+  + K D  +   I   + E    + +  R   +      
Sbjct: 182 GLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMLNEQKHILLATQRGSLKQMKASE 241

Query: 728 GWLGKRGGVGSLVPKGFPRSG--KFLS 752
                R   G L+ +   +S   +F+ 
Sbjct: 242 FEPISRAKRGLLMLREL-KSNPHRFIG 267


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 98/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 95/119 (79%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           M+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGIAVGMAT+IP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|47094489|ref|ZP_00232164.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017134|gb|EAL07992.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 334

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 99/267 (37%), Gaps = 16/267 (5%)

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSLKIALHA 557
           +    +     + ++  E + V ++  G+++     S   S    L  KE D        
Sbjct: 2   QAEIPEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKM 61

Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-DLNHNQDIVTAF---VYDST 611
           ++ D +LL ++ G     P   L   R    G+ +  L  DL+  ++I +A     +   
Sbjct: 62  NSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEE 121

Query: 612 CKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRK 669
            + L V+  G       +        K    +K+  ++++  V  + G + + +  +N  
Sbjct: 122 KRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGY 181

Query: 670 LLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
            L +SI +IPE   R  GV+  + K D  +   I     E    + +  R   +      
Sbjct: 182 GLRYSITEIPESGARTAGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASE 241

Query: 728 GWLGKRGGVGSLVPKGFPRSG--KFLS 752
                R   G L+ +   +S   +F+ 
Sbjct: 242 FEPISRAKRGLLMLREL-KSNPHRFIG 267


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+I +IR        +  ++    +
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIRRSKTVKIAREGLMGLLEI 62

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL+++LR L  LE  +I +E D L A+  + +++L S ++Q   +  E+  + 
Sbjct: 63  DEIQANAILDMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVREELAAIV 122

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E F        RR+        D     + +I +E I V IS  G+++  K+        
Sbjct: 123 EKFGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKR 174

Query: 544 HFK 546
             K
Sbjct: 175 GGK 177


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 78/107 (72%)

Query: 14  EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
            + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6   NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           KSARIVGEVIGK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 66  KSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/135 (47%), Positives = 95/135 (70%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEARMTQVAELILQ 145
           YTE R++++A ++L 
Sbjct: 122 YTETRLSKIASVMLT 136


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/127 (58%), Positives = 100/127 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 176/452 (38%), Gaps = 38/452 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           +++++   +   + A+++     R IP L D  KP  R+I+       L++G        
Sbjct: 28  QSINVTDYVNNDHKAFSVFNSI-RQIPQLIDSLKPSQRKILFTA----LEYGKEEIVDRL 82

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQ--PFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            +       +  G +++ +++V +AQ  P     P     G FG+I G  A++ RY    
Sbjct: 83  GMFAAARTNYKSGGENMGNTIVNMAQAFPGTNNIPYFDRDGQFGSIMGRDASSARYISVS 142

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ V   I +  DE  +D+   Y  E+  EP  F    P  L NG +GI  G +T  P H
Sbjct: 143 VSDVIRKIFRKEDEGILDY--NYLGEEQLEPKFFLPVIPMFLVNGINGIGSGYSTDTPCH 200

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            V+ +  A  AL+   + +       +        G    + E             R  +
Sbjct: 201 CVKSVLSALRALLRGEDPTD------LKPYWNGYKGETGYTEEG------------RAYS 242

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
           R   + +   +  + +TE+P          K+  L+   +  LL +  +++ ED   +  
Sbjct: 243 RGIFKRI--NATTLHITEVPIGWFAKSYETKV--LLPLYKAGLLTEYANDTTEDGWDITV 298

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              R     L    I  +  + +            G + +      +L  +  +R     
Sbjct: 299 VFKRGELSKLDDAQIEQMFKLYSANKPVWTAWDEDGVIRRYSGWKEMLLSFFNYRLIRYE 358

Query: 374 RRSSFRMQAIDRRVEI--LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            R  + ++ +  ++     + L I++  + ++   I    + K +  + +   +  +D +
Sbjct: 359 DRRQYLLKEMTDKIHRLNNRALFISWAVVTDMRRSIT---ELKALFQTDYPDFDGDLDEL 415

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
             + L S+      ++ +++ NL  ++E++++
Sbjct: 416 FKMSLSSITLDARERLLNQIKNLEEQREELNN 447


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%)

Query: 30  YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89
           Y+ YA+S I  RA+P++RDG KPVHRR+++AM + G     +  KSAR V E +G  HPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           GD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 101/127 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE RM+++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG+SGI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/132 (53%), Positives = 100/132 (75%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVY ++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 118/290 (40%), Gaps = 21/290 (7%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++ +T ++ +   + +   +++  + Y + +  +RAIP L DG KP  R++++A  +  L
Sbjct: 723 TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 781

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                  + +  V +     + HG+ S+  ++V +AQ F       L+   G FG+    
Sbjct: 782 KSKLKVSQLSGYVSDKAA--YHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRARG 839

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L NG+ G
Sbjct: 840 GKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKE-DDGKVIEPFYYAPILPMVLINGSDG 898

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +T+IP  +  ++  +    I       EK                    +  +  
Sbjct: 899 IGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEK----------RNLKPFSNGWKGTMTH 948

Query: 243 YRLGRGGF-RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
                G F R R   C   V      I +T++P  V      E+I   I 
Sbjct: 949 EYDKSGKFVRWRMTGCFSVVDLK--TIQITDLPIGVWTESYREEIETWIK 996


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           ++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M+E+G      +KKSARIVG
Sbjct: 1   NIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVG 60

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           EV+GK HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  EVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/127 (59%), Positives = 99/127 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG SGI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 184 AVGMATS 190
           AVGMAT+
Sbjct: 121 AVGMATN 127


>gi|175941427|gb|ACB72668.1| GyrA [Streptomyces sp. Fd 004]
          Length = 173

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420
           W+ H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++  
Sbjct: 1   WVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGL 60

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             + E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+ 
Sbjct: 61  LEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILVSPERQRQIVSEELA 120

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            + E F        RR+        D     + +I +E I V IS  G+++  K+     
Sbjct: 121 AIVEKFGD-----DRRSKLV---PFDGDMSIEDLIAEEDIVVTISRGGYVKRTKTDDYRS 172

Query: 541 S 541
            
Sbjct: 173 Q 173


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/569 (16%), Positives = 198/569 (34%), Gaps = 101/569 (17%)

Query: 16   NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
             VK ++    + +  + ++++   ER+IP++ DG K  HR+ +++  +  L       + 
Sbjct: 745  GVKKLTYSDFINKELVLFSIADC-ERSIPNIVDGLKTSHRKTLYSCFKRNLKKEIKVAQL 803

Query: 76   ARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRY 131
               V E     + HG+ S+Y ++V +AQ F       L++  G++G     G   ++ RY
Sbjct: 804  IGYVSE--HSAYHHGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARY 861

Query: 132  TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
               R+  +A  +    D+  +      + +  +P  +    P +L NG  GI  G +++I
Sbjct: 862  IHTRLNDIARAVYHADDDPILS-CVVDDGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTI 920

Query: 192  PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251
            P++N +++ +          I  + L           G I       +     L +G ++
Sbjct: 921  PNYNPRDLIQNMRL-----AIDGKPLKPIKPWYRGFLGSIEANQGSKVQGGQYLSKGIWK 975

Query: 252  VRA--RWCVEEVGRGSWCIVVTEI------------------------------PYQVQK 279
              +  R+ + E+  G W     E+                              P   ++
Sbjct: 976  KLSDNRFEITELPIGFWTQDYRELLDELETPGTRKKKKEEKEKKAASRKGTKAKPTTTKR 1035

Query: 280  SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            S+ ++   +         ++   + S+E     +    + +D ++ +E +F L  + T  
Sbjct: 1036 SKRVDDDDD-NEKVTEATVKSYTNYSSESTIHFIIDTIQPVD-EINIEKVFKL--VSTIN 1091

Query: 340  PLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRRSSF---RMQAIDRRVEILKGLLI 395
              NM V     R+ +      + + +   R +    R  F   R+     R+      ++
Sbjct: 1092 ETNMVVFDEEGRIQRFATTTALQEHFFPLRIKHYQMRKDFLSERLSEEYSRLSNKARFIL 1151

Query: 396  AYLN-------------------------------------IDEIIAIIRNEDKPKPVMV 418
            A +N                                     I +       ED       
Sbjct: 1152 AVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKSARDKIKKKKNAFDEEDAAISSDE 1211

Query: 419  SRFSLTENQ------VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
             +    E Q       D +L+L L SL  LE   +K  ++   ++K++ D LL++     
Sbjct: 1212 EKDGAQEEQDDDTKGYDYLLSLPLWSLT-LER--VKKLIEERDSKKKEWDILLSTP--IQ 1266

Query: 473  NQIACEIREVKEIFSKSTDLGRRRTTFCE 501
                 ++  +++                E
Sbjct: 1267 EIYKRDLDALEKALDDQDAYDESLKNQTE 1295


>gi|530421|emb|CAA83739.1| DNA gyrase (alpha) [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 257

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 18/254 (7%)

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +RL  L   +  ++  E   L+ + +K   +LN      N+I   + EVK+ F      G
Sbjct: 1   MRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQF------G 54

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDLSALHFKEGDS 550
            +R +  E    D    Q+ +I ++ I + IS  G+I+ + +   +  +LS+   K  D 
Sbjct: 55  IKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDM 114

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFVY 608
                     D ++L+S     Y++P   + + +    G  I  +     N+ I+ A V 
Sbjct: 115 WISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVI 174

Query: 609 DS----TCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVKVTGD--HV 661
                 T  LL+V+  G     + S++      K    +K+S ++ +     ++    + 
Sbjct: 175 KEFINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 234

Query: 662 AVVGENRKLLIFSI 675
            +V +N   + ++I
Sbjct: 235 CIVTKNGYAVRYNI 248


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query: 31  LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90
           +AYA+S +  RA+PD+RDG KPVHRRI+ AM E+GL     +KK AR+VGEV+GK HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           D +VYDSLVR+AQ F  R PLI G GNFG++D D  AA RYTE R+  +
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEVI 109


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 95/122 (77%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 168 FP 169
            P
Sbjct: 121 MP 122


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 60/172 (34%), Gaps = 11/172 (6%)

Query: 589 AIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644
            I   ++++ ++ I T             L+  +  G     + S      + GK  +  
Sbjct: 339 PIVNALEIDKDEMISTMIAVKDLSSEEDYLVFATKHGTVKRSKLSNFSRINKNGKIAINF 398

Query: 645 SSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702
              +++  V    G   + +  ++  L+ F   ++  + R   GV+  + ++    +VI 
Sbjct: 399 KEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPLGRTAAGVKGITLRED--DEVIG 456

Query: 703 FKICEG---LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
             + +       +    + Y +  +     +  RGG G        ++G  +
Sbjct: 457 LDVTDEDQQDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKNGNLV 508



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 14/230 (6%)

Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSL 551
              +          + +  +E   V  +  G ++  K  +          A++FKEGD L
Sbjct: 345 EIDKDEMISTMIAVKDLSSEEDYLVFATKHGTVKRSKLSNFSRINKNGKIAINFKEGDEL 404

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
                   T  I++ +            L         ++  I L  + +++   V D  
Sbjct: 405 IAVRLTDGTKEIIIGTKHASLIRFDESKLRPLGRTAAGVKG-ITLREDDEVIGLDVTDED 463

Query: 612 CK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD-HVAVVG 665
            +  +L+V+ KG        +   + R GK     +  EK   +  +  V GD  + +V 
Sbjct: 464 QQDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKNGNLVCITTVNGDEDLMIVT 523

Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714
            +  ++   +  I +  R  +GVRL    D      +     +     +S
Sbjct: 524 NSGVIIRLHVADISQNGRSAQGVRLIRLGDNQHVATVAKVEPDENEIAES 573


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           + LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I  E+ 
Sbjct: 4   YYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREELE 63

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS-------- 532
            +++ F        RRT   E++        + +I +E + V +S++G+++         
Sbjct: 64  LIRDQFGDK-----RRT---EITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEA 115

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571
            +      SA   KE D +   L A+T D IL  S+ G+
Sbjct: 116 QRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGR 154



 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            +  DI    + +    ++ +S +G       S+  A  R  KGK+  ++  E+   +L+
Sbjct: 79  ANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLL 138

Query: 654 VKVTGDHVAVVGENRKL 670
           V  T D +       +L
Sbjct: 139 VANTHDTILCFSSRGRL 155


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/125 (52%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+
Sbjct: 62  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 137 TQVAE 141
           ++ +E
Sbjct: 122 SKYSE 126


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 119/296 (40%), Gaps = 21/296 (7%)

Query: 7    SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
            ++ +T ++ +   + +   +++  + Y + +  +RAIP L DG KP  R++++A  +  L
Sbjct: 722  TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 780

Query: 67   DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                   + +  V +     + HG+ S+  ++V +AQ F       L+   G FG+    
Sbjct: 781  KTKLKVSQLSGFVSDKAA--YHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRARG 838

Query: 123  GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
            G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L NG+ G
Sbjct: 839  GKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKE-DDGKVIEPFYYAPILPMVLINGSDG 897

Query: 183  IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
            I  G +T+IP  +  ++  +    I       EK           T        +  +  
Sbjct: 898  IGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRREK----------RTLKPFSNGWKGTMTH 947

Query: 243  YRLGRGGF-RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
                 G F R R   C   V      I +T++P  V      E+I   +       
Sbjct: 948  EYDKSGKFVRWRMTGCFSVVDLK--TIQITDLPIGVWTESYREEIETWVKGNEDAG 1001


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/100 (66%), Positives = 83/100 (83%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 146/332 (43%), Gaps = 31/332 (9%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           + T+IPSHN+ ++  A+++ + N +I+ ++L   I GPDF TGGII+  ++++   Y  G
Sbjct: 1   ILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTG 60

Query: 247 RGGFRVRARWCVEEVGRGS----------------------WCIVVTEIPYQVQKSRLIE 284
           +G   +R+    E V                            +++  +P  V+ + LIE
Sbjct: 61  KGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIE 120

Query: 285 KIAELIIAKRIP---LLEDIRDESAEDVRIVLFPKNRSLDPDLLME---SIFMLSDMETR 338
            I  ++  K+     +L  IRDES ++   ++    +    + +      +F  + ME  
Sbjct: 121 NIVTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEIN 180

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +  N   +          L   L+ W  +R + + +    +   + + + I+   L    
Sbjct: 181 YHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKDLNIIDLYLTIQK 240

Query: 399 NIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            I +II+ I      + +     S F L ++Q+  IL+++++ L  ++      +  N++
Sbjct: 241 KILDIISFIHKNQNIEQIQNYLKSNFKLNDDQIKYILSMKIQKLVNIKNIDFDIQKKNII 300

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + +    ++++ ++    I  E+ ++K  +S
Sbjct: 301 KKIQSNQYIIDNVQEIKQIIIDELIQIKNKYS 332


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/116 (56%), Positives = 93/116 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 19/289 (6%)

Query: 7   SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66
           ++ +T ++ +   + +   +++  + Y + +  +RAIP L DG KP  R++++A  +  L
Sbjct: 723 TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 781

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--ID 122
                  + +  V +     + HG+ S+  ++V +AQ F       L+   G FG+    
Sbjct: 782 KTKLKVSQLSGFVSDKAA--YHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRARG 839

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           G  ++A RY    +  +A  +    D+  + +++  + +  EP  +    P +L NG+ G
Sbjct: 840 GKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKE-DDGKVIEPFYYAPILPMVLINGSDG 898

Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242
           I  G +T+IP  +  ++  +    I       EK           + G     + ++   
Sbjct: 899 IGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEK-----KTLKPFSNGW----KGTMTHE 949

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291
           Y       R R   C   V      I +T++P  V      E+I   I 
Sbjct: 950 YDKNGKFVRWRMTGCFSVVDLK--TIQITDLPIGVWTESYREEIETWIK 996


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/116 (56%), Positives = 92/116 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/124 (52%), Positives = 90/124 (72%), Gaps = 1/124 (0%)

Query: 19  AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
            ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR 
Sbjct: 1   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 60

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMT 137
           VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R++
Sbjct: 61  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 120

Query: 138 QVAE 141
           + +E
Sbjct: 121 KYSE 124


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/127 (55%), Positives = 97/127 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           QGNFG+IDGDSAAA RYTE RM+++A  +L  +D++ VD+   Y+  +  P V P+K PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 175 LLANGTS 181
           LL NG+S
Sbjct: 121 LLVNGSS 127


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/130 (50%), Positives = 92/130 (70%), Gaps = 1/130 (0%)

Query: 13  VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
           + +  + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A F
Sbjct: 1   MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 61  KKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120

Query: 132 TEARMTQVAE 141
           TE+R+++ +E
Sbjct: 121 TESRLSKYSE 130


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 101/132 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V P+
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 171 KFPNLLANGTSG 182
           K P LL NG +G
Sbjct: 121 KVPTLLINGATG 132


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/123 (52%), Positives = 89/123 (72%), Gaps = 1/123 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAE 141
            +E
Sbjct: 121 YSE 123


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/123 (53%), Positives = 90/123 (73%), Gaps = 1/123 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAE 141
            AE
Sbjct: 121 YAE 123


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/130 (52%), Positives = 94/130 (72%), Gaps = 1/130 (0%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR V
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           G+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 139 VAELILQGVD 148
            AEL+L  + 
Sbjct: 121 YAELLLSELR 130


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/125 (56%), Positives = 89/125 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 4   RPDRSHAKSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 63

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           AA RYTEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVG
Sbjct: 64  AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 123

Query: 187 MATSI 191
           MAT+I
Sbjct: 124 MATNI 128


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 115


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
           ++ED+RDES  +   RIV+ P++  +D DLLM  +F  +D+E  + +N+N++ +   PQV
Sbjct: 1   MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQV 60

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             L  IL EW+  RR  + RR  +R+  +  R+ IL+GLL+AYLN+DE+I IIR ED PK
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPK 120

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            V++ RF +T+ Q DAIL+ +LR L KLEE +I+ E D
Sbjct: 121 AVLMERFGITDIQADAILDTKLRHLAKLEEMKIRGEQD 158


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/125 (52%), Positives = 91/125 (72%), Gaps = 1/125 (0%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           + ++L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSAR 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARM 136
            VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+
Sbjct: 62  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 137 TQVAE 141
           ++ +E
Sbjct: 122 SKYSE 126


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 81/132 (61%), Positives = 101/132 (76%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           L    A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQGNFG+IDGD+
Sbjct: 1   LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RYTEARMT+ +E IL+ +D+D +DF   Y++   EP + PS+ PNLL NG +GIAV
Sbjct: 61  AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 120

Query: 186 GMATSIPSHNVQ 197
           GMATSIP H + 
Sbjct: 121 GMATSIPPHRMD 132


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424
           + EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    + 
Sbjct: 1   QIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEID 60

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           E Q +AIL ++LR L  LE  +I +E D L A+  + + +L S  +Q   ++ E+  + +
Sbjct: 61  ELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRTIVSEELAAIVD 120

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544
            F        RR+        D     + +I +E I V IS  G+++  K+         
Sbjct: 121 KFGD-----DRRSALV---PFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQNRG 172

Query: 545 FK 546
            K
Sbjct: 173 GK 174


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 74/139 (53%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1089

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 159/403 (39%), Gaps = 46/403 (11%)

Query: 18   KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK---- 73
            + +S    + E  + +A   I ER+IP L DGF+   R++++++ +   +    F+    
Sbjct: 630  RRMSYGSFINEELI-FAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIK 688

Query: 74   --KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     H H ++S+  +++R+AQ F       L+     FG+    G    
Sbjct: 689  VTQLASYVSEHAA--HHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDV 746

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
              RY    ++ +  L++   D+D +++ + +      P  F    P +L NG+  + +G 
Sbjct: 747  DARYIHTLLSSITRLLIHKDDDDILEYHNVF-GRKRHPECFLPIMPMVLVNGSQSVGMGW 805

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
               IPS++ + I      L+     +             P        +  I       +
Sbjct: 806  NRFIPSYDPRVISSNIKRLLRGETQT-------------PMLPWYRNFKGDIK------Q 846

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
                      + +V      I +TE+P  V     ++ +  L     I   ++  D ++ 
Sbjct: 847  VSSNEYTTTGIYDVNDKDRSIRITELPVHVWTMNYLKVLERLKKHSVIEGYKNDSDNTSI 906

Query: 308  DVRIVLFPK--NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV-PQVMPLDGILKEW 364
            D+++ L  +   R L+     + + + + + T    NM++L+   V  +    D IL+E+
Sbjct: 907  DIKLSLSEEQMKRFLNEKNPRKLLRLSTTIRTN---NMHLLNRFNVLTKYESPDKILEEF 963

Query: 365  LAHRREVLFRRSS-------FRMQAIDRRVEILKGLLIAYLNI 400
               R  +   R         F    ++ +V I + +L   +NI
Sbjct: 964  FEERLNMYRVRKEHMVQILTFERDKLECKVAIFQRVLNGEINI 1006


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423
           H+ EV+ RR+ FR++  + R  IL+GLL A   IDE+IA+IR  +     +  ++    +
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEI 62

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            E Q +AIL ++LR L  LE  +I +E D L A+  + +++L S ++Q   ++ E+  + 
Sbjct: 63  DEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAAIV 122

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
           E F        R +              + +I KE I + IS  G+++  K+        
Sbjct: 123 EKFGD-----DRCSKLV---PFYGDMSIEDLIAKEDIVLTISRSGYVKRTKTDDYRSQKR 174

Query: 544 HFK 546
             K
Sbjct: 175 GGK 177


>gi|221124382|ref|XP_002163411.1| PREDICTED: similar to phosphoserine aminotransferase [Hydra
           magnipapillata]
          Length = 495

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679
           G        E     + G   + +   + +       G H V +  +  K + F  + + 
Sbjct: 2   GTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVR 61

Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            M R  +GVR     +G     +     E  + + +    Y +  N        RG  G 
Sbjct: 62  PMGRNARGVRGMMLDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNITEYTRHGRGTKGM 121

Query: 739 LVPKGFPRSGKFLSS 753
           +  +   R+GK +++
Sbjct: 122 IAIQQSERNGKVVAA 136



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
                 + A+   EGD L  A        ++L S  GKA      ++     +   ++ +
Sbjct: 14  NPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGM 73

Query: 594 IDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652
           + L+  Q ++   V +   + +L  +  G       +E   + R  K  + +   E+   
Sbjct: 74  M-LDEGQSVIAMLVAEDEQQSVLTATENGYGKRTNITEYTRHGRGTKGMIAIQQSERNGK 132

Query: 653 VVKVT----GDHVAVVGENR 668
           VV  T     D + ++ +  
Sbjct: 133 VVAATLVHAEDEIMLITDKG 152


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 2/135 (1%)

Query: 176 LANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVES 235
           + NG+SGIAVGMAT+IP HN+ E+    LA IDN +ISIE L+E+I GPDFPT  I +  
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAI-ING 59

Query: 236 RESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
           R  I E+YR GRG   +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR
Sbjct: 60  RRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKR 119

Query: 295 IPLLEDIRDESAEDV 309
           +  +  +RDES +D 
Sbjct: 120 VEGISALRDESDKDG 134


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 103/139 (74%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 106/139 (76%), Gaps = 1/139 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+I+AMSE+GL+  A +KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++++EL+L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 171 KFPNLLANGTSGIAVGMAT 189
           + P++L NGT+GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSA A RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 74/98 (75%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHR I++ M E+G     A+KKSARIV
Sbjct: 1   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIV 60

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           GEV+GK HPHGD SVY +LVR+AQ +  RYPL+ GQGN
Sbjct: 61  GEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 93/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DTY+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYDG 115


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/125 (57%), Positives = 94/125 (75%)

Query: 29  RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88
            YL Y +S +K RA+P++ DG KPV RRI+ AM +MGL  GA   KSAR+VGE++GK HP
Sbjct: 1   AYLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 60

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148
           HGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L  ++
Sbjct: 61  HGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 120

Query: 149 EDAVD 153
           +  V+
Sbjct: 121 QGTVE 125


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/115 (56%), Positives = 91/115 (79%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHR +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/125 (49%), Positives = 87/125 (69%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
           ++ ++ +    L   + E Y  YA   I++RA+PD+RDG KPV RRI++AMSE+G+    
Sbjct: 2   SVNQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDK 61

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AAA R
Sbjct: 62  PYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMR 121

Query: 131 YTEAR 135
           YTE R
Sbjct: 122 YTETR 126


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/539 (13%), Positives = 169/539 (31%), Gaps = 112/539 (20%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +     +++  + ++      RAIP   DG+KP  R+I+    +  +       + +  V
Sbjct: 670  IKYSDFVDKELILFSSYA-NYRAIPSSIDGWKPGQRKILWVCLKNNIKNDLKVAQLSGKV 728

Query: 80   GEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEAR 135
             E     H  G+ S+ ++++ + Q F       +    G  G     G+ + + RY    
Sbjct: 729  SEQAAYHH--GEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTA 786

Query: 136  MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            + ++   I    D+D + + +T      EPV +    P +L NG  GI VG ++ +P + 
Sbjct: 787  LEKITRTIFMKEDDDLLTY-NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYC 845

Query: 196  VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255
             Q+I +     +++              P              I+    +  G  +   +
Sbjct: 846  PQDIIDNLRRKMNDE-------------PMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVK 892

Query: 256  WCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI------------------ 295
            W    + +      I +TE+P  +      + +  L + + +                  
Sbjct: 893  WESRGIVKKIDDTTIEITELPIGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKR 952

Query: 296  -------------------------PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
                                     P + + R+         +   + S   ++    + 
Sbjct: 953  TKKKAAAGDDPVEQADVEEKVNLGGPKISEFREYHTNVSVHFIITVDDSQMREIESVGLR 1012

Query: 331  MLSDMETRFPLNMNVLSM--GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV- 387
                +++        L     ++ Q      I+ ++   R +    R  + + A+  +  
Sbjct: 1013 EFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQYK 1072

Query: 388  ----------EILKGLLIA------------------YLNIDEIIAIIRNEDK------- 412
                      E++ G++                      +  E+   I+  D+       
Sbjct: 1073 KLSNQARFIREVIAGIIKVNGVPRATILAALERGNYDLYDDKELTKRIKFADEVIQQHNE 1132

Query: 413  --------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                             +L E   D +L +++ +L K +  ++  E      E E++  
Sbjct: 1133 EEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEMLK 1191


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD A
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 137/360 (38%), Gaps = 35/360 (9%)

Query: 2   GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            +D   NS+   +      +    + +  + ++    + R+IP++ DG KP  R+ +   
Sbjct: 601 AIDLAFNSDKPEDRRTWLKNYT-FINKELILFSKEDNR-RSIPEMIDGLKPGQRKTLFCS 658

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
             +  D+    K S      +    + HG+QS+  +++++AQ +       L+   G FG
Sbjct: 659 --LARDWKTECKVSVLTAHAIDRSDYNHGEQSLASTIIKMAQDYVGSSNVNLLLPMGQFG 716

Query: 120 NI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           +    G  AA+ RY    ++     +    D+  + + D  N+   EP  +    P +L 
Sbjct: 717 SQIFGGQDAASARYLYTMISPATRALFHKDDDVLLAWMDGDNQRMIEPKWYIPIIPTVLV 776

Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237
           NG  GI  G +T +P ++ +++ +  + L     +S E L   +       G I      
Sbjct: 777 NGCEGIGTGWSTFVPKYSTKDVIKNIMRL-----MSGEALEPMVPSYRGFKGTITE---- 827

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP--YQVQKSRLIEKIAELIIAKRI 295
                     GGF  +  +   E    +  I +TE+P  +     + +      ++    
Sbjct: 828 --------TEGGFITKGVF---EKNIQNSTIRITELPIKHLSNYKKFLH-----VLKTEE 871

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             +++IRD S+     +L   +R        +    L         NMN+       ++ 
Sbjct: 872 KFIKEIRDNSSRSSIDILLTLSRENMEIADEDIYTKLKLRTKILTTNMNLFDPTSQEEIK 931


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 178/474 (37%), Gaps = 39/474 (8%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K++++   +   +  +++     R IP L D  KP  R+I+ A     L++         
Sbjct: 7   KSITVTDFVNTDHKQFSV-VNSIRQIPQLIDSLKPSQRKILFAA----LEYNKEEIVDRL 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            +       +  G +++  ++V +AQ F      P     G FG+I G  A++ RY    
Sbjct: 62  GMFAAARTNYKSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGRDASSARYISVA 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           ++ V   I +  DE  +++   Y  E+  EP  F    P  L NG +GI  G +T  P H
Sbjct: 122 VSDVIRKIFRKEDEGILEY--NYLGEERLEPKFFLPILPMFLVNGINGIGTGYSTDTPCH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            V+ +  A  AL+       + L  Y  G    TG                  G    R 
Sbjct: 180 CVKSVLSALRALLRGE--DPKDLKPYWNGYKGETG--------------YTEEGRAYSRG 223

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +        +  + +TE+P          K+  L+   +  +L +  +++ ED   +  
Sbjct: 224 IFR----RVNATTLHITEVPVGWFAKTYETKV--LLPLYKAGILTEYANDTTEDGWDITV 277

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              R     L  E +  +  + +            G + +      +L  +  +R     
Sbjct: 278 VFKRGELSKLSDEQVEQMFKLYSANKPVWTAWDEDGVIHRYAGWQDMLLPFFNYRLSRYE 337

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
            R  + ++ +  R+  L G    ++     + + +  D  K + +  +      +D +  
Sbjct: 338 DRRQYLLKDMADRIRKL-GDRAVFIEWATRVDLRQKIDVLKSLFMQDYPDFGGDLDELFK 396

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           + L S+      ++  +++NL A+ +++     S K+  +    ++ ++++   
Sbjct: 397 MPLSSITLDARERLLKQIENLEAQHKEL-----SKKEDIDLYTEDLDDLEKALG 445


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 91/540 (16%), Positives = 176/540 (32%), Gaps = 99/540 (18%)

Query: 19   AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78
             VS    +E+  L Y      E +IP L DG KP  R+I+  + +M         + A  
Sbjct: 687  EVSTTEDVEKTELNY------EESIPSLIDGLKPSQRKILWTLLKMDETTEMKVSQLAGA 740

Query: 79   VGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEA 134
            V     + + HG++S+  ++VR+ Q F      PL+   G FG  +  G+ AA+ RY   
Sbjct: 741  VAH--RQSYHHGEESLVRTIVRMGQTFCGASNMPLLQPIGQFGTRHEGGNDAASARYIFT 798

Query: 135  ----------------RMTQV--------------------------AELILQGVDEDAV 152
                            R                                 I+       +
Sbjct: 799  SLAYVDIQKTKQFREKRQMPFDSASQKTYMSPESSTSQGGVMTFPGWCYDIMTRPTTRLL 858

Query: 153  DFRDTYN--------EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204
                  +            EP       P +L NGT GI  G +T + + N  ++ +   
Sbjct: 859  FPIADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIR 918

Query: 205  ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264
              ID   + + ++  +                E +  +  +  G  ++      E     
Sbjct: 919  RKIDLSSLVVNEIPPFYEDYKGKI--------EIVTPTKFISTGKIKIS---RPERKNAS 967

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
            ++ + ++E+P  V  S+  EK++ ++    I    +   E   + R++   K  +     
Sbjct: 968  TFSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARFLQK 1027

Query: 325  LMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
                +     + T    N  +    G++ +   +  I  E+   R+++  +R    ++  
Sbjct: 1028 SNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKR----LEIQ 1083

Query: 384  DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-------------- 429
             R  E     +   +N  E++     E K          L E   +              
Sbjct: 1084 KRECEAKLKYVNNQMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSNY 1143

Query: 430  -AILNLRLRSLR-----KLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIREV 482
              +L + L  L      +L+E + +  L+   AE     S  +S   +    I    +E 
Sbjct: 1144 GYLLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDKLEESIKKTRKEY 1203


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 118/335 (35%), Gaps = 32/335 (9%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPL 111
              ++    +          + A  V E     + HG+ S+  ++V LAQ +       L
Sbjct: 6   QLHVLFTCIKRNDKREIKVAQLAGSVAE--HSAYHHGEVSLMSTIVNLAQNYVGSNNINL 63

Query: 112 ISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           +   G FG     G  AA+ RY    ++ +  LI    D+  + +    + +  EPV + 
Sbjct: 64  LQPIGQFGTRLQGGKDAASPRYIFTMLSPLTRLIFHPHDDPLLTYLR-DDNQKIEPVWYM 122

Query: 170 SKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTG 229
              P +L NG  GI  G  T IP+HN +E+      ++       E  L         TG
Sbjct: 123 PIIPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRG-----EDPLPMKPWYKNFTG 177

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE- 288
            I   S +  + S  LG                 G   + +TE+P  V      E + E 
Sbjct: 178 HIEKLSEQKFISSGELGVI---------------GHNRVEITELPVGVWTQNYKESVLEP 222

Query: 289 -LIIAKRIP-LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            L   ++ P ++ D ++ + +     +   N         E I     +     L     
Sbjct: 223 MLTDTEKSPAVITDYKEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCA 282

Query: 347 SMGR--VPQVMPLDGILKEWLAHRREVLFRRSSFR 379
                 + +      IL+E+ A R +   +R ++ 
Sbjct: 283 FDKDCVLKKYEATQQILREFYAVRLDFYGKRKAYL 317


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 92/115 (80%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF   Y+ 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYDG 115


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)

Query: 245 LGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            GRG   VRA+  VE +  R    I+VTEIPYQV K++++EKIAEL+  KR+  + DIRD
Sbjct: 3   TGRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDIRD 62

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ES  D   V+    +   P +++  ++  + ++  F + M  L     P+++ L  IL  
Sbjct: 63  ESDRDGIRVVIELKKGELPPVILNQLYKHTQLQNTFGVIMLALV-HNRPEILTLKQILVA 121

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           +L HRREV+ RR+++ ++  + R  I++GL IA
Sbjct: 122 FLEHRREVVIRRTAYELRKAEERAHIVEGLNIA 154


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 26  LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85
           ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI++ M E+G      +KKSARIVGEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            HPHGD SVY ++VR+AQ +  RYPL+ GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 118/293 (40%), Gaps = 19/293 (6%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            +T ++ ++  +S    +    + Y      ER IP + DG K   R+I+  + +   + 
Sbjct: 3   PDTHLDRSITRISYHDFINFELI-YFFQANLERCIPSVADGLKLSSRKILFTLFK--CNK 59

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV---QRYPLISGQGNFGNI--DG 123
               ++ A  V +     + H  QS+  ++VR+AQ +V       L+   G FG+    G
Sbjct: 60  KVTVEQLASDVSKTCS--YHHSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQFGSRISGG 117

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
             A+  +Y    ++ +A ++    D+  + +    + +  EP+ +    P +L NG  G+
Sbjct: 118 KDASNPKYIFTELSVMARVLFPNDDDVHLQYLK-EDGKTIEPLCYMPVIPTVLVNGARGV 176

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +T IP ++ +EI E    L+    +             F      V+S+  +  + 
Sbjct: 177 GSGWSTFIPKYDPREIAENIRRLLKGEVMIAMDPW----YRKFKGTIEKVKSKAGVTTAS 232

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           + G   ++    + V         +V+TE+P      + I  + +      I 
Sbjct: 233 KEGPCTYKTSGLFEV----INETTLVITELPVYKWTKKYISFLQDTKEKGFIQ 281


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|332258450|ref|XP_003278314.1| PREDICTED: DNA topoisomerase 2-alpha [Nomascus leucogenys]
          Length = 906

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 12/225 (5%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
            + L  +    ++    + +  + ++ S   ER+IP + DG KP  R+++    +     
Sbjct: 682 EDYLYGQTTTYLTYNDFINKELILFSNSD-NERSIPSMVDGLKPGQRKVLFTCFKRNDKR 740

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G 
Sbjct: 741 EVKVAQLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGK 798

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
            +A+ RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI 
Sbjct: 799 DSASPRYIFTMLSSLARLLFPPKDDHTLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIG 857

Query: 185 VGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPD 225
            G +  IP+ +V+EI      L+D     P +SI  +L  +  P 
Sbjct: 858 TGWSCKIPNFDVREIVNNIRRLMDGEEPLPMVSILCVLRALTFPW 902


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 138/381 (36%), Gaps = 33/381 (8%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
            +IP + DG +P  R+++    +          K A  V       +  G+ S+  +++ 
Sbjct: 5   HSIPSVMDGLRPTQRKVLFTCFKRNDKDKVEVIKLAGSVA--ADSAYREGEASLMGTIIG 62

Query: 101 LAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           LAQ F       L+   G FG  +  G  AA+ RY    ++++A  I    D+  +  + 
Sbjct: 63  LAQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHPSDDPLLKHQI 122

Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEK 216
             NEE       P   P +L NGTSGI  G        N + I +     +D  +     
Sbjct: 123 DSNEEIEPESYVP-IIPMILINGTSGIGTGGMIDFLKFNPRHIVDFLKQKLDGKQP---- 177

Query: 217 LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ 276
            L   +     TG I     E   ++     G + V +   VE          +TE+P+ 
Sbjct: 178 -LPINLWLKGFTGKI-----EGSGDNQYTSSGNYAVLSSTQVE----------ITELPFG 221

Query: 277 VQKSRL-IEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           V      I  I +L+    +  PL+ D ++    +        + +       E ++   
Sbjct: 222 VWTHNYKISVIEKLLRGSEEMSPLITDFQEHHTGNTVKFTVTMSEAKMRQAKDEGLYKAF 281

Query: 334 DMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            +++   +   VL               IL+++   R ++  +R ++    +    + L 
Sbjct: 282 QLQSTHYITSMVLCDPSGSPKIYYSYQQILEDFYPVRLKLYEKRKNYFSGYLQAISKKLS 341

Query: 392 GLLIAYLN-IDEIIAIIRNED 411
                    ID+++ +    +
Sbjct: 342 NQFRFVCEVIDDVLIVFNKGN 362


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 91/122 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 136/329 (41%), Gaps = 33/329 (10%)

Query: 16  NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75
           ++  + L   + ER + +++     R+IP L DG K   R++++A+ +  L + +   K 
Sbjct: 103 SIVQMDLSQFINERMIHFSIDDC-GRSIPHLLDGLKESQRKVLYAVFKKKLSYKSKTLKV 161

Query: 76  ARIVGEVIGKL-HPHGDQSVYDSLVRLAQPFVQR----YPLISGQGNFGNIDGDSAAAYR 130
            ++ G       + HG+Q +YD+++ LA   + +    Y    GQ       G  A+A R
Sbjct: 162 NQLAGFTAEHTGYHHGEQCLYDTIINLATDIMGKNNIPYLYRDGQFGSRLDGGKDASAGR 221

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS-GIAVGMAT 189
           Y   +   +   +    D++ +  R+T + E  EP  +    P  L NG   GI  G + 
Sbjct: 222 YIFTKEDMLTRKLFIPSDDNLLP-RNTDDGEPVEPRFYVPIIPTALVNGCQAGIGTGWSC 280

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
           S+P +N  ++  +                ++I     P         + ++   R+    
Sbjct: 281 SLPLYNPLDLVSSCK--------------KWIKNQTLPELSPWYRGFKGVIT--RISPTK 324

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309
           F          + R +  + +TE+P  V  ++    + +L+  K I  L +    + ++V
Sbjct: 325 FSTSGL-----MERKNDTVTITELPIGVWTNKYKSFLEDLLEKKFIKKLSNYS--TPKEV 377

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           + V+      +     ME++ +++ + T 
Sbjct: 378 KFVIKEHRNGM--KCTMENLKLINTVTTS 404


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/134 (47%), Positives = 91/134 (67%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           + ++ V    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1   MDKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           ++KSA  VGEVIGK HPHGD S+Y++LVR+ Q +    PLI  QGN G+IDGD+AAA RY
Sbjct: 61  YRKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRY 120

Query: 132 TEARMTQVAELILQ 145
           TEAR++    L+L+
Sbjct: 121 TEARLSHYGNLMLE 134


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 90/122 (73%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D+  V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVGMAT+
Sbjct: 121 GSSGIAVGMATN 132


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 119/290 (41%), Gaps = 27/290 (9%)

Query: 5   NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64
           N  N +  ++ + K +S    + +  + +++  +  R++P+L DGFKP HR++ +   E 
Sbjct: 700 NTYNPDNYLDPSKKRISYYDFIHKELITFSVDDVL-RSVPNLMDGFKPSHRKVFYGSVEK 758

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI- 121
            +                + K H HGDQS+  ++V +AQ +       L+   G FG+  
Sbjct: 759 NIYKQEIKVSDLTGFVSNMTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGMFGSRL 817

Query: 122 -DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
             G  +A+ RY   ++  +A+ I    D D +  + + +    EPV +    P +L NG 
Sbjct: 818 TGGKDSASPRYLNTKLDDLAKKIFIDYDFDILQHQ-SEDNCRIEPVYYAPIIPMILVNGA 876

Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240
            GI  G +T I   N ++I      L+ N      K           TG I         
Sbjct: 877 EGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKTMK-----PWFRHLTGTIE-------- 923

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
              ++    +  RA++ +     G   I +T++P  +        +  LI
Sbjct: 924 ---KIDGAKYISRAKYEI----IGKDTIHITDLPVGIWTDNYKAFLDNLI 966


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/121 (57%), Positives = 90/121 (74%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +    KKSARIVG+VIGK HPHGD +VY ++VR+AQPF  RY LI GQGNFG++DGD+ A
Sbjct: 1   WNKPNKKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE R+++ A  ++  +D++ VDF   Y+E +  P V P++ PNLL NG SGIAVGM
Sbjct: 61  AMRYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGM 120

Query: 188 A 188
           A
Sbjct: 121 A 121


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 7/167 (4%)

Query: 101 LAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           +AQPF  RYPLI GQGN+G   D  S AA RYTE+R+++ ++ +L  +    VD+   ++
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNFD 60

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
               EP + P++ PN++ NGT+GIAVGMAT IP HN +EI +A + L+DNP+  +  +++
Sbjct: 61  GTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVMQ 120

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           Y+ GPD+PT   I+ +++ I +S +      RV  R   E  GR   
Sbjct: 121 YVQGPDYPTEAEIITAQDDIKKSIK------RVVVRSECELFGRKKK 161


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 84/105 (80%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +  +++  YL Y++S I  RA+PD RDG KPVHRRI++AM+++G+   +A+KKSARIV
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/122 (55%), Positives = 90/122 (73%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ + K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 24  FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVI 83
              E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+
Sbjct: 1   EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVL 60

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQ 138
           GK HPHGD + Y ++V +AQPF  RYPL+ GQGN G   D  S AA RYTE+R+++
Sbjct: 61  GKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPDDPKSFAAMRYTESRLSK 116


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRII+AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE++++++AE++L  + +  VD++  ++    EP   P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 171 KFPNLLANGTSGIAVG 186
           + P++L NGT GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 173/531 (32%), Gaps = 96/531 (18%)

Query: 20   VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
            +     +++  + ++      RAIP   DG+KP  R+I+    +  +       + +  V
Sbjct: 670  IKYSDFVDKELILFSSYA-NYRAIPSSIDGWKPGQRKILWVCLKNNIKNDLKVAQLSGKV 728

Query: 80   GEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEAR 135
             E     H  G+ S+ ++++ + Q F       +    G  G     G+ + + RY    
Sbjct: 729  SEQAAYHH--GEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTA 786

Query: 136  MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
            + ++   I    D+D + + +T      EPV +    P +L NG  GI VG ++ +P + 
Sbjct: 787  LEKITRTIFMKEDDDLLTY-NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYC 845

Query: 196  VQEICEAALA-LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
             Q+I +     + D P + +        G   P   I    ++ IV+    G        
Sbjct: 846  PQDIIDNLRRKMNDEPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKWESRGIVKKIDDT 905

Query: 255  RWCVEEVGRGSWCIVVTEI-----------PYQ-------------------------VQ 278
               + E   G W     +            P++                         V+
Sbjct: 906  TIEITEFTNGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKRTKKKAAAGDDPVE 965

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
            ++ + EK+         P + + R+         +   + S   ++    +     +++ 
Sbjct: 966  QADVEEKV-----NLGGPKISEFREYHTNVSVHFIITVDDSQMREIESVGLREFFKLKSS 1020

Query: 339  FPLNMNVLSM--GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV--------- 387
                   L     ++ Q      I+ ++   R +    R  + + A+  +          
Sbjct: 1021 ITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQYKKLSNQARF 1080

Query: 388  --EILKGLLIA------------------YLNIDEIIAIIRNEDK--------------- 412
              E++ G++                      +  E+   I+  D+               
Sbjct: 1081 IREVIAGIIKVNGVPRATILAALERGNYDLYDDKELTKRIKFADEVIQQHNEEEEEQNEF 1140

Query: 413  PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                     +L E   D +L +++ +L K +  ++  E      E E++  
Sbjct: 1141 KSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEMLK 1191


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/93 (54%), Positives = 69/93 (74%)

Query: 25  ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84
            ++  Y+ Y++S I  RA+PD+++GFKPVHRRI+  M  +G      +KKSAR+VGEV+G
Sbjct: 1   EMKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLG 60

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           K HPHGD SVY +LVR+AQP+  RY L+ GQGN
Sbjct: 61  KYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 91/120 (75%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 2   KKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/132 (62%), Positives = 106/132 (80%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           G+IDGD AAA RYTEARMT +AE +L+ +D+D VDF   Y++  SEP V P++ PNLL N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 179 GTSGIAVGMATS 190
           G+SGIAVG AT+
Sbjct: 121 GSSGIAVGRATN 132


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/122 (54%), Positives = 88/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               + KSAR+VG+   K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKYVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 167/448 (37%), Gaps = 34/448 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S++         Y+  +   R I    DG K   R+II+   +  L+          +V 
Sbjct: 5   SIQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETKVSIFDNMVQ 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
                LH      + +  +  +       PL+ G+GNFG+   +  AA RY   +  +  
Sbjct: 64  SYTQYLHGSCAGVIQN--MAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKKYI 121

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEI 199
             +    D   V     +   + EPV +    P L+ NG+ +G+A G   +I   ++  +
Sbjct: 122 NDLF---DIKDVLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLDSV 178

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                             ++YI           +   +  VE                V 
Sbjct: 179 ------------------IKYIKTGKKVDLKPYIAGFKGTVELVEDASSNNTQWNFIGVV 220

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           EV +     ++TEIP  ++ ++ +E +  L+ +K+I   +D+ D+  ++ +  +     +
Sbjct: 221 EVNKNK--AIITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQEFKFEVI-FFDN 277

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +  D  ++ + +       +     +    +V     ++ I+  ++  R+  L ++  F 
Sbjct: 278 ISKDKAIDILKLSKRETEIYNA---LDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 380 MQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--TENQVDAILNLRL 436
           ++ ++  + I  + L    L ID  + I++   K   + +        E+  D +L L +
Sbjct: 335 LKVLENDLNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKFEDSYDYLLKLPI 394

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            S       ++      + A+ E + +L
Sbjct: 395 HSFTNETFEKLVQNAKEIKAKFETLKNL 422


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 86/115 (74%), Gaps = 1/115 (0%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVA 140
           HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ A
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYA 115


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 3   KKYVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 3   KKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 89/122 (72%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               F KSAR+VG+ I K HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ A
Sbjct: 1   ANKKFVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
           A RYTE RM ++ + +L  +D++ ++F   Y+ E   P V P++ P LLANG+SGIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 188 AT 189
           AT
Sbjct: 121 AT 122


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/121 (54%), Positives = 88/121 (72%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIA
Sbjct: 61  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIA 120

Query: 185 V 185
           V
Sbjct: 121 V 121


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           ++ ++T F +NM  L     P+V+ L  IL  +L H++ V+ RR+ F ++  + R  IL+
Sbjct: 1   MTALQTTFGINMLALVDNH-PKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILE 59

Query: 392 GLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           GL IA  NID II +IR     D  K  ++++F+L++ Q  AIL++RL+ L  LE  +I+
Sbjct: 60  GLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIE 119

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            E  NL+A    + ++L   ++    I  E+ E+K  ++  
Sbjct: 120 EEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADK 160


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/134 (51%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRII+AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ 
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 114 GQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           GQGN+G   D  S AA RYTEAR+++ +EL+L  + +  VD+   ++    EPVV P++ 
Sbjct: 61  GQGNWGAPDDPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARL 120

Query: 173 PNLLANGTSGIAVG 186
           P++L NG +GIAVG
Sbjct: 121 PHILLNGITGIAVG 134


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 167/448 (37%), Gaps = 34/448 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
           S++         Y+  +   R I    DG K   R+II+   +  L+          +V 
Sbjct: 5   SVQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETKVSIFDNMVQ 63

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
                LH      + +  +  +       PL+ G+GNFG+   +  AA RY   +  +  
Sbjct: 64  SYTQYLHGSCSGVIQN--MAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKKYI 121

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT-SGIAVGMATSIPSHNVQEI 199
             +    D   V     +   + EPV +    P L+ NG+ +G+A G   +I   ++  +
Sbjct: 122 NDLF---DIKDVLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLDSV 178

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
                             ++YI           +   +  VE                V 
Sbjct: 179 ------------------IKYIKTGKKVDLKPYIAGFKGTVELVEDASSNNTQWNFIGVV 220

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           EV +     ++TEIP  ++ ++ +E +  LI +K+I   +D+ D+  ++ +  +     +
Sbjct: 221 EVNKNK--AIITEIPPFIEYTKYLEILDNLIESKKIKNYKDLSDQRNQEFKFEVI-FFDN 277

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
           +  D  ++ + +       +     +    +V     ++ I+  ++  R+  L ++  F 
Sbjct: 278 ISKDKAIDILKLSKRETEIYNA---LDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 380 MQAIDRRVEIL-KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--TENQVDAILNLRL 436
           ++ ++  + I  + L    L ID  + I++   K   + +        E+  D +L L +
Sbjct: 335 LKVLENDLNINVQKLRFVKLIIDSELQIMKRSKKDIELDLESKGFIKFEDSYDYLLKLPI 394

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            S       ++      + A+ E + +L
Sbjct: 395 HSFTNETFEKLVQNAKEIKAKFETLKNL 422


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/122 (57%), Positives = 92/122 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G   G  +K +ARIVG+V+GK HPHGD ++YDSLVR+AQ F    PL+ GQGNFG+IDGD
Sbjct: 3   GYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGD 62

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RYTEAR+ +V+  +L  +DED +DFR  Y+  ++EPVV P++FPNLL NG SG+A
Sbjct: 63  PPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASGVA 122

Query: 185 VG 186
           VG
Sbjct: 123 VG 124


>gi|168181190|ref|ZP_02615854.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182667970|gb|EDT79949.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 241

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + +  G     E S+  +  + G   + +  ++++  V    G D + VV +N   + F+
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGK 732
            + +  M R   GV+  + +       +   +  E  T +  +   + +  +     + +
Sbjct: 61  EEDVRPMGRVATGVKAITLR--KTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYPIHR 118

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RGG G +  K   ++G  + +
Sbjct: 119 RGGKGVITYKITDKTGPIVGA 139



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 523 VISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576
           + +  G I+  +           L+A++ +E D L         D I++++ +G      
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636
             ++         ++  I L      V+  V      LL +S  G     +  E   + R
Sbjct: 61  EEDVRPMGRVATGVKA-ITLRKTDKAVSMDVVIEDETLLSISENGFGKRTDIEEYPIHRR 119

Query: 637 KGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQS 691
            GK  +     +K   +V        D + +V      +  ++ +I + SR   GV+L  
Sbjct: 120 GGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMR 179

Query: 692 YKDGGISDVIC 702
             +      I 
Sbjct: 180 TSEEEKIVAIA 190


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 1/139 (0%)

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
            NP+++ ++L++ I GPDFPTGGI++  R  ++ +Y  G+G   VRA+  +E    G   
Sbjct: 1   KNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYESGKGNIVVRAKTEIETEKSGRER 59

Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327
           I+V+EIPY V K+ L++KIAEL   K I  +  +RDES +    +     R     +++ 
Sbjct: 60  IIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLN 119

Query: 328 SIFMLSDMETRFPLNMNVL 346
           ++F  + M++ F +NM  +
Sbjct: 120 NLFKETQMQSNFAMNMVAI 138


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 4/158 (2%)

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              ++++ ++F  + ME+ + + M  +     P+V     +L  +L HR+ V+ RR+ + 
Sbjct: 1   AMSEIVLNNLFKSTTMESTWGVIMLAIHNKE-PKVFSFFELLNLFLNHRKTVIIRRTIYE 59

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436
           +Q    R  IL+GL IA  NIDE+IA+I+N       K +++ +F L+E Q +AIL+++L
Sbjct: 60  LQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSNAILDMKL 119

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             L  LE  +I +EL  LLAE E++D +L S     N 
Sbjct: 120 GRLTGLEREKIDNELRELLAEIERLDQILKSETLLENL 157


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 19/180 (10%)

Query: 394 LIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
            IA  NIDE+IA+I+N    +  +  +V++F L+E Q +AIL+++L  L  LE  +I++E
Sbjct: 1   KIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENE 60

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L  L+ E  +++ +L S     N I  E++E++  F              ++        
Sbjct: 61  LAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVP--------RITQIEDDYDDID 112

Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562
            + +I  E + V I++RG+I+          K       A+   + D ++    A+T D 
Sbjct: 113 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFSTANTHDT 172


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 79/98 (80%)

Query: 38  IKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDS 97
           I  RA+PD+RDG KPVHRR++ AM+E+   +   +KKSAR+VG+VIGK HPHGD +VYD+
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDT 60

Query: 98  LVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           +VR+AQPF  RY L+ GQGNFG++DGDS AA RYTE R
Sbjct: 61  IVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/115 (59%), Positives = 89/115 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIEEIPYSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+   G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGETSLAATIVNLAQNYVGSNNINLLKPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEVMPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPVVPLVLINGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 165/520 (31%), Gaps = 98/520 (18%)

Query: 12   LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
            L E++ + VS    +    + Y+      R+IP++ DGFKP  R++++   +        
Sbjct: 675  LYEKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVLYTCLKRNDKREVK 733

Query: 72   FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAA 127
              + A  V E     + HG+ S+  +++ LAQ F       L+   G FG     G  AA
Sbjct: 734  VAQLAGSVAE--HSAYHHGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 791

Query: 128  AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187
            + RY    +  +                                                
Sbjct: 792  SPRYIFTMLRYI------------------------------------------------ 803

Query: 188  ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
               IP++N +EI E    ++D  +            P  P         ES  +   +  
Sbjct: 804  --YIPNYNPREIIENLYRMMDGAD----------PKPMVPYYKNFKGVIESCGDFRYIIN 851

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDE 304
            G   V     +E          +TE+P         E + E ++    K    + D ++ 
Sbjct: 852  GEISVIGPDKIE----------ITELPIGTWTQTYKETVLEPMLHGTDKTPATITDYKEY 901

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILK 362
            + +     +   NR    DL  + +     ++T   +           + +   +  ILK
Sbjct: 902  NTDTAVHFIIMLNRDKLLDLERDGLHKAFKLQTTMTVTSMCAFDENQCLQKYDSVLQILK 961

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             +   R E+  +R  +    +    E  K    A   +++    I  E+K +  M++   
Sbjct: 962  GFYKVRLEMYHKRKEYLEGILQ--AEASKLSNQARFIVEKCDGTIVIENKKRKDMIAELI 1019

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE---------KEKIDSLLNSGK-QQW 472
              E + D +L  +L         ++  E+   + +         KE  D LL        
Sbjct: 1020 RREYESDPVLAWKLSQ----NREEVLEEVAENVDDETVSSTAITKENFDYLLGMTLWSLT 1075

Query: 473  NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             +   E+   K+         + RT            L +
Sbjct: 1076 KEKKDELLRQKDDKLAELKRLQARTPISLWKEDLDNLLNE 1115


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
             + KSAR+VG+ IGK HPHGD +VYD +VR+AQPF  RY L+ GQGNFG+IDGD+ AA 
Sbjct: 2   KKYVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+SGIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 528 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 586

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 587 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 644

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 645 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 703

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 704 GIGTGW 709


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 170/451 (37%), Gaps = 36/451 (7%)

Query: 18  KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77
           K++++   +   +  +++     R IP L D  KP  R+I+ A     L++         
Sbjct: 7   KSITVTEFINGDHKEFSV-VNSIRQIPQLIDSLKPSQRKILFAA----LEYNKEEIVDRL 61

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
            +       +  G +++  ++V +AQ F      P     G FG+I G  A + RY    
Sbjct: 62  GMFAAARTNYKSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGREAPSARYISVA 121

Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDS-EPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
           +++V   I +  D+  +++   Y  E+  EP  F    P  L NG +GI  G AT  P H
Sbjct: 122 VSEVIRKIFRKEDDGILEY--NYLGEEKLEPKFFLPILPMFLVNGINGIGSGYATDPPCH 179

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            V+ +  A  AL+       + L  Y  G    TG                  G    R 
Sbjct: 180 CVKSVLSALRALLRGK--DPKDLKPYWNGFKGETG--------------YTEEGRAYCRG 223

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +        +  + +TE+P          K+  L+   +  +L +  +++ ED   +  
Sbjct: 224 LF----PRVNATTLNITEVPIGWFSKTYETKV--LLPLYKAGVLTEYANDTTEDGWDITV 277

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLF 373
              R     L  E +  +  + +            G + +      +L  +  +R     
Sbjct: 278 VFKRGELSKLNDEQVEQMFRLYSANKPVWTAWDEDGVIHRYDGWKDMLLPFFNYRLSRYE 337

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAIL 432
            R  + ++ +  ++  L    I       +I  +R    + K +  + +   +  +D + 
Sbjct: 338 DRRQYLIKELTDKIHRLNNRAIFIGW--AVITDMRRSLTELKALFQTDYPDFDGDLDDLF 395

Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
            + L S+      ++ +++ NL  ++E++++
Sbjct: 396 KMSLSSITLDARERLLNQIKNLEVQREELNN 426


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 499 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 557

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 558 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 615

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 616 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 674

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 675 GIGTGW 680


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 554 QFKPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRN 612

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 613 LKKEIKVAQLVGYISEHAT--YHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 670

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 671 GGKDHASPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 729

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 730 GIGTGW 735


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 371 QFKPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRN 429

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 430 LKKEIKVAQLVGYISEHAA--YHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 487

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 488 GGKDHASPRYIFTEVSPLTRMICHPEDDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 546

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 547 GIGTGW 552


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYSPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  ++V LAQ +       L+S  G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
            + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AE
Sbjct: 61  SACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 111


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N++ +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 520 QFKPGTYLDHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRN 578

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S+  +++ LAQ +       L+   G +G  D 
Sbjct: 579 LKKEIKVAQLVGYISEHAA--YHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQ 636

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    ++ +  +I    D+  +  R T +    EP  +    P +L NG  
Sbjct: 637 GGKDHASPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGAD 695

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 696 GIGTGW 701


>gi|121533295|ref|ZP_01665123.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
 gi|121307854|gb|EAX48768.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
          Length = 199

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + + KG     E  E     + G   L +  ++++  V    G+ H+ +   +   + F 
Sbjct: 1   MATKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFP 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICF-KICEGLTWIDSAGRSYNRSENDLLGWLGK 732
             Q+  M R   GV+  + +DG +  V+    + +    +      Y +           
Sbjct: 61  ESQVRVMGRTAHGVKGITLRDGDV--VVGMDTVKKDGHVLTVTEAGYGKRTPVEEYRQQS 118

Query: 733 RGGVGSLVPKGFPRSGKFLS 752
           RGG G +  K   ++GK + 
Sbjct: 119 RGGKGLINNKITEKTGKVIG 138



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 14/194 (7%)

Query: 525 SNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           + +G ++         +  + L AL   E D L      +    ILL + DG A   P  
Sbjct: 3   TKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFPES 62

Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            +         ++  I L     +V          +L V+  G        E    +R G
Sbjct: 63  QVRVMGRTAHGVKG-ITLRDGDVVVGMDTVKKDGHVLTVTEAGYGKRTPVEEYRQQSRGG 121

Query: 639 KTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           K  +     EK   V+ +     G  + ++  +  ++   +D+I    R  +GV++ S  
Sbjct: 122 KGLINNKITEKTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSV- 180

Query: 694 DGGISDVICFKICE 707
            G    V+     +
Sbjct: 181 -GENDRVVALAAVD 193



 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG------- 528
             E+ E    F  +  +G    T  E    D   +   +   E   ++ +  G       
Sbjct: 10  KTELLE----FDTARKIGLIALTLDE----DDELIDVKLTNGEQHILLGTRDGMAINFPE 61

Query: 529 -WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
             +R +   +  +  +  ++GD +           +L ++  G     P          G
Sbjct: 62  SQVRVMGRTAHGVKGITLRDGDVVVGMDTVKKDGHVLTVTEAGYGKRTPVEEYRQQSRGG 121

Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVS 645
           + +           ++   V     +L++++  G     +  EI    R   G   + V 
Sbjct: 122 KGLINNKITEKTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSVG 181

Query: 646 SEEKMKLVVKVT 657
             +++  +  V 
Sbjct: 182 ENDRVVALAAVD 193


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/109 (59%), Positives = 90/109 (82%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 194/480 (40%), Gaps = 45/480 (9%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           +K +S+   ++  + AYA     +R IP + DG KP  R+IIH   E  +      K +A
Sbjct: 1   MKEISISQHIQGDHKAYATYD-NQRNIPHIADGLKPSLRKIIHTAIET-MRGKEEVKVAA 58

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
                     + HG+ S+ D++V L + +      PL+  QG FG +  + A+  RY   
Sbjct: 59  LGSRASDLTEYGHGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDNDASEPRYIHV 118

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
                     +  D   +DF+ +   +  EPV F    P +L N +SG+  G ++ I   
Sbjct: 119 SRHANLSHCFKEEDRAILDFQVS-EGKTIEPVFFLPPLPLVLINASSGVGNGYSSKILPR 177

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + Q + E + A+++   I+ E  L +         G     + +   SY +  G  ++  
Sbjct: 178 SPQALIEMSKAILNETPINPEWSLPHFP-------GFKGRVKATGPCSYEI-HGAIQLNP 229

Query: 255 RWCVEEVGRGSWCIVVTEIP----YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +   E          + ++P    YQ ++ +  E +  L+ +K I   E    E A  ++
Sbjct: 230 KAKTE--------FTIIDLPPDSKYQYEQFKERE-LLPLLDSKTIKNFESDSTEQAWSIK 280

Query: 311 IVLFPKNRSLDPDLL--MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            V   +  +  P+L+  M  I  +++  T +         G++ +    + +L++WL  R
Sbjct: 281 -VQSTREFAQHPELVKRMGMILRVTENLTVW------TWDGQLKRYPTAEALLRDWLVGR 333

Query: 369 REVLFRRSSFRMQA--IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS---L 423
              + +R    +     +    ++K   + + N +   A+  + D+ K    S       
Sbjct: 334 EYYMEKRRQSEIARSTKEMNWLLVKVEFLKWWNANHNQAVRMSNDEIKSSFTSTLGDLKF 393

Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            +  +  +L L + SL+      +++  D + +    ++S           I  ++ E K
Sbjct: 394 DDEMLSKLLALPVSSLKMSGIEALQNAHDEVESYVRFMESTTA-----KAMIITDMEEYK 448


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 88/115 (76%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
            GQGNFG++DGDSAAA RYTE RM ++A  +L  ++++ VDF   Y+  ++ P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AE
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 110


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ AE
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 110


>gi|320089090|emb|CBY98845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 231

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           + ++ G       +E       G   + ++  +++  V   +G D V +     K++ F 
Sbjct: 1   MATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGK 732
            D +  M R   GVR       G   V+   I  G    +      Y +           
Sbjct: 61  EDAVRAMGRTATGVRGIKL--AGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKS 118

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           R   G +  K   R+G  + +
Sbjct: 119 RATQGVISIKVTERNGSVVGA 139



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 10/191 (5%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
           +  S  + A++  +GD L        +D ++L S  GK        + +       ++  
Sbjct: 18  RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRG- 76

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-M 650
           I L  +  +V+  +      +L V+  G        E    +R   G   +KV+     +
Sbjct: 77  IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSV 136

Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFK 704
              V+V   D + ++ +   L+   + +I  + R  +GV L    +     G+  V    
Sbjct: 137 VGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPV 196

Query: 705 ICEGLTWIDSA 715
             E L  ID +
Sbjct: 197 DDEELDAIDGS 207


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
              Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +E
Sbjct: 61  SPCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 111


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 32  AYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGD 91
            Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 92  QSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
            + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +E
Sbjct: 61  IACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 111


>gi|330721079|gb|EGG99218.1| DNA gyrase subunit A [gamma proteobacterium IMCC2047]
          Length = 225

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
           +  + G                G   + +  ++ +  V    G   + +     K   F+
Sbjct: 1   MAMASGTVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFA 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
            + +  M R  +GVR    K+G    +      EG   +  +   Y +           R
Sbjct: 61  EEDVRPMGRTARGVRGIRLKEGE-RLISLIIPQEGGRVLSVSENGYGKRTEMTDFPSHNR 119

Query: 734 GGVGSLVPKGFPRSGKFLSS 753
           GG G +  +   R+G+ + +
Sbjct: 120 GGQGVIAMQTSERNGELVGA 139



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 6/169 (3%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
             +  S  L A+     D+L        +  I+L S  GK       ++         ++
Sbjct: 16  FARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFAEEDVRPMGRTARGVR 75

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSE 647
             I L   + +++  +     ++L VS  G     E ++  ++ R G+  + +     + 
Sbjct: 76  G-IRLKEGERLISLIIPQEGGRVLSVSENGYGKRTEMTDFPSHNRGGQGVIAMQTSERNG 134

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
           E +  V    GD + ++ +   L+    D I  +SR  +GV L     G
Sbjct: 135 ELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVSRNTQGVSLIKVSKG 183


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 82/115 (71%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
           +  +EE ++ V L   +  R+  Y+   I++RA+PD RDG KPV RRI++AM +MGL F 
Sbjct: 9   DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F  R PL+   GN G+IDGD
Sbjct: 69  KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGD 123


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 93/136 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +     +GLDF   FKKSARIVG+VIGK HPHGD SVYD+++ LAQ +    PL+S  GN
Sbjct: 1   LLQCGMLGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
            G+ID D  AA RYTE ++ ++A  I+  + +  V F   +++ ++EP+V PS FPNLL 
Sbjct: 61  IGSIDDDKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLV 120

Query: 178 NGTSGIAVGMATSIPS 193
           NG+ GIA+GMAT +P 
Sbjct: 121 NGSRGIAIGMATEMPP 136


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/107 (60%), Positives = 81/107 (75%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +
Sbjct: 1   GKYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEM 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
           L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 61  LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 8/186 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
                T ++ N+  +     + +  + ++++    R+IP + DG KP  R++I    +  
Sbjct: 511 QFKPGTYLDHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRK 569

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID- 122
           L       +    + E     + HG+ S   ++V LAQ +       L+S  G +G  D 
Sbjct: 570 LKKEIKVAQLVGYISEHAA--YHHGEMSSSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQ 627

Query: 123 -GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            G   A+ RY    +  +  L+    D+  +  R T +    EP  +    P +L NG  
Sbjct: 628 GGKDHASPRYIFTEIAPLTRLLCHPADDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAE 686

Query: 182 GIAVGM 187
           GI  G 
Sbjct: 687 GIGTGW 692


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 8/183 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++ N+  +     + +  + ++++    R+IP + DG KP  R+++    +  L  
Sbjct: 514 PGTYLDHNMDEIPFSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVVWGCFKRKLKK 572

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                +    + E     + HG+ S+  +++ LAQ +       L+   G +G  D  G 
Sbjct: 573 EIKVAQLVGYISEHAA--YHHGEASLAATIINLAQNYVGSNNINLLKPNGQYGTRDQGGK 630

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             A+ RY    +  +  +I     +  +  R T +    EP  +    P +L NG  GI 
Sbjct: 631 DHASPRYIYTEVMPLTRMICHPAGDPLLK-RQTDDNLLVEPEWYMPVVPLVLVNGAEGIG 689

Query: 185 VGM 187
            G 
Sbjct: 690 TGW 692


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 93  SVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA  YTE+R+++ AE
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMCYTESRLSKYAE 110


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 83/105 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ 
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRD 105


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 89/117 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|5712089|gb|AAD47358.1|AF038578_1 gyrase A subunit [Pseudomonas stutzeri]
          Length = 255

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 5/148 (3%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667
            +   + + ++KG        +       G   L++   + +           V +  + 
Sbjct: 2   PTGAYIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQEVMMFSDG 61

Query: 668 RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSEND 725
            K++ F   ++  M R  +GVR     +G    +I   I E G   + ++ R Y +    
Sbjct: 62  GKVIRFKESKVRMMGRTARGVRGMRLPEG--QRIISMLIPELGAQILTASVRGYGKRTAM 119

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  RGG G +      R+G  + +
Sbjct: 120 EEVPRRGRGGQGVIAMVTNERNGALVGA 147



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 89/252 (35%), Gaps = 35/252 (13%)

Query: 521 TVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574
             + + +G ++        +  S  L AL  +EGD+L  A        +++ S  GK   
Sbjct: 7   IFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQEVMMFSDGGKVIR 66

Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
                +         ++ +  L   Q I++  + +   ++L  S +G        E+   
Sbjct: 67  FKESKVRMMGRTARGVRGM-RLPEGQRIISMLIPELGAQILTASVRGYGKRTAMEEVPRR 125

Query: 635 TRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
            R G+  + + + E+    +  V  + G+ + ++ +   L+   +D++  + R  +GV L
Sbjct: 126 GRGGQGVIAMVTNERNGALVGAVQVLEGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTL 185

Query: 690 QSY----------------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733
                              ++  + DV      E L            +E D    L   
Sbjct: 186 IKLGKNEHLVGLERVQEPSEEDVLEDVEASLDEESL----EKEMPVVSTEPDEDELL--- 238

Query: 734 GGVGSLVPKGFP 745
           GG G + P   P
Sbjct: 239 GGGGDVPPDVVP 250


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|309807647|ref|ZP_07701589.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169113|gb|EFO71189.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 323

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 99/263 (37%), Gaps = 25/263 (9%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           M+ +E + V++S  G+++     S    D +      GD +       T   + + +  G
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKG 60

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
                P   L     R  G+ +   I L +++ I++ F     +S    L+ ++ G    
Sbjct: 61  NLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQ 120

Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKV------TGDHVAVVGENRKLLIFSIDQI 678
           V  S++    T K +  + +  ++    V+ V      + + + +V  N   L F ++++
Sbjct: 121 VALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV 180

Query: 679 PEMS-RGKGVRLQSYKDGGISDVICFKICE------GLTWIDSAGRSYNRSENDLLGWLG 731
           P +  R  GV+  + K+     V              L  +   G       + +  +  
Sbjct: 181 PLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFT- 239

Query: 732 KRGGVGSLVPKGFP-RSGKFLSS 753
            R   GS++ +    +  + +++
Sbjct: 240 -RAKRGSMILRELKTKPHRIVAA 261


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 83/105 (79%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           AQ +  R+ L+ G GNFG++DGD AAA RYTEARM+++A  +L+ 
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRD 105


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 68/90 (75%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
           ++ +S+   ++  YL YA+S I  RA+PD+RDG KPVHRRI++ MSE+G+D+   + K A
Sbjct: 16  IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           R+ G+V+GK HPHG+ ++YD+L R+AQP+ 
Sbjct: 76  RVTGDVMGKYHPHGNTAIYDALARMAQPWS 105


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 89/117 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  R+ L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           D AAA RYTEARM+++A  +L+ ++++ VDF+D Y+  + EP+V P++FPNLL NG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++ AE++L  + +  VD+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 61  RLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|309806045|ref|ZP_07700068.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167564|gb|EFO69720.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
          Length = 330

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 99/263 (37%), Gaps = 25/263 (9%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSV---DLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570
           M+ +E + V++S  G+++     S    D +      GD +       T   + + +  G
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLPSGDEVIFDKTVSTLSNLYIFTNKG 60

Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625
                P   L     R  G+ +   I L +++ I++ F     +S    L+ ++ G    
Sbjct: 61  NLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLIFLITTNDGYIKQ 120

Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKV------TGDHVAVVGENRKLLIFSIDQI 678
           V  S++    T K +  + +  ++    V+ V      + + + +V  +   L F ++++
Sbjct: 121 VALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYALRFDVNEV 180

Query: 679 PEMS-RGKGVRLQSYKDGGISDVICFKICEG------LTWIDSAGRSYNRSENDLLGWLG 731
           P +  R  GV+  + K+     V              L  +   G       + +  +  
Sbjct: 181 PLVGPRAAGVKSINLKNDDDYVVSAITFDPECLNSLKLGIVTQRGAFKQLQVDLVNKFT- 239

Query: 732 KRGGVGSLVPKGFP-RSGKFLSS 753
            R   GS++ +    +  + +++
Sbjct: 240 -RAKRGSMILRELKTKPHRIVAA 261


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ +     + +  + ++++    R+IP + DG KP  R+++ A  +  L  
Sbjct: 514 PGTYLDHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQRKVMWACFKRKLKK 572

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                +    +GE     + HG+ S+  ++V LAQ F       L+  +G +G     G 
Sbjct: 573 EIKVAQLVGYIGEQAA--YHHGEVSLAQTIVNLAQNFVGSNNLNLLDPRGQYGTREQGGK 630

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           + A+ RY   +   ++ +I    D+  ++ +   +    EP  +    P  L NG  GI 
Sbjct: 631 NHASPRYIFTQPMSISRVIFNPADDALLNAQK-DDNMVIEPEWYMPIVPMTLINGAEGIG 689

Query: 185 VGM 187
            G 
Sbjct: 690 TGW 692


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/116 (55%), Positives = 87/116 (75%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
            G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G+GNFG+IDG
Sbjct: 2   WGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+  +  P V P+K PNLL NG
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 8/183 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ +     + +  + ++++    R+IP + DG KP  R +I A  +  L  
Sbjct: 518 PGTCLDHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQREVIWACFKRKLKK 576

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNID--GD 124
                +    V E     + HG+ S+  ++V LAQ F       L+S  G +G  D  G 
Sbjct: 577 EIKVAQLVGYVSEHAA--YHHGEASLAATIVSLAQDFVGSNNVNLLSPNGQYGTRDQGGK 634

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
             AA RY    +  +   +    D+  +  +   +    EP  +    P +L NG  GI 
Sbjct: 635 DHAAPRYIFTDLPPLTRALYHPSDDPLLAVQK-DDNLVIEPEYYVPVIPLVLVNGAEGIG 693

Query: 185 VGM 187
            G 
Sbjct: 694 TGW 696


>gi|313638139|gb|EFS03398.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 296

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 13/226 (5%)

Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLI-D 595
           +   L  KE D        ++ + +LL ++ G     P   L   R    G+ +  L  D
Sbjct: 5   NGKELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASD 64

Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMK 651
           L+  ++I +      +    + L V+  G       +        K    +K+  ++++ 
Sbjct: 65  LSAGEEIRSVIDIPTFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELL 124

Query: 652 LVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEG 708
            V  + G + + +  +N   L + I +IPE   R  GV+  + K D  +   I   + + 
Sbjct: 125 NVHLIDGTEDIFLATKNGYGLRYPITEIPESGARTAGVKAINLKQDDKVVGGIVLSLNDP 184

Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
              + +  R   +           R   G L+ +   ++   +F+ 
Sbjct: 185 KHILLATQRGSLKQMKASEFEPISRAKRGLLMLREL-KNNPHRFIG 229



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 71/223 (31%), Gaps = 15/223 (6%)

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
           +  +     + +     +     G    +  ++    +      + +       ++ +  
Sbjct: 45  ELPDIRWKNLGDHVSHLASDLSAGEEIRSVIDIPTFTEEHRFLFVTKN-----GMTKQSL 99

Query: 530 IRSLKSHSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG 587
           I + K      S  A+  K+ D L        T+ I L + +G     P   +       
Sbjct: 100 ITNYKPQRYSKSMMAIKLKDDDELLNVHLIDGTEDIFLATKNGYGLRYPITEIPESGART 159

Query: 588 EAIQLLIDLNHNQDIVT--AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
             ++  I+L  +  +V       +    +L+ + +G+   ++ SE    +R  +  L + 
Sbjct: 160 AGVKA-INLKQDDKVVGGIVLSLNDPKHILLATQRGSLKQMKASEFEPISRAKRGLLMLR 218

Query: 646 S----EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
                  +   +      DH+ +     +++   +  +    R
Sbjct: 219 ELKNNPHRFIGITLADNKDHLFIETNTDQIVEIDVANLRVTDR 261


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/110 (51%), Positives = 85/110 (77%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
             L+ G GNFG++DGDS AA RYTEA+M++++  +L+ ++++ VDF+  +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/123 (43%), Positives = 86/123 (69%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI+++M++ G  F   ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 108 RYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           R  L+   GN G++DGD  AA RYTEAR++++A  +LQ ++++ V F   +++ + EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 168 FPS 170
            P+
Sbjct: 121 LPA 123


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIT 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K++LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 82/108 (75%), Gaps = 1/108 (0%)

Query: 35  LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94
           +  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAE 141
           Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +E
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 108


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSA+ V + +G  HPHGD ++YD++VR+AQP+  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTEAR+T +A  +++ + E+ VDF+  Y+   +EPV+ PS+ P LL NG+ G
Sbjct: 61  YTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 90/115 (78%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 88/111 (79%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY 
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++ 
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDT 111


>gi|207108362|ref|ZP_03242524.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 220

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 6/150 (4%)

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL--VVKVTGDHVAVV 664
           +     L   +  G       SE  +N    G   + +   +++    VV     H+ + 
Sbjct: 1   FSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIA 60

Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                 + F ++ + EM R  +GV      K+  +   +     +G   +  +     + 
Sbjct: 61  SHLGIFIKFPLEDVREMGRNARGVIGIKLNKNDFVVGAVVISD-DGNKLLSVSENGLGKQ 119

Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
                     RGG G +  +   ++G  +S
Sbjct: 120 TLAEAYRGQSRGGKGIIGMRLTQKTGNLVS 149



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 16/193 (8%)

Query: 517 KEPITVVISNRGWIRSLKSHSVD-------LSALHFKEGDSLKIALHAHTTDRILLLSTD 569
            E      +  G ++               + A+   EGD L  A       + LL+++ 
Sbjct: 3   DERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASH 62

Query: 570 -GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV-TAFVYDSTCKLLVVSSKGNAFIVE 627
            G     P  ++     +   +   I LN N  +V    + D   KLL VS  G      
Sbjct: 63  LGIFIKFPLEDVREMGRNARGVIG-IKLNKNDFVVGAVVISDDGNKLLSVSENGLGKQTL 121

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS 682
                  +R GK  + +   +K   +  V+ V  +   + ++  + K++  SI  I E  
Sbjct: 122 AEAYRGQSRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETG 181

Query: 683 R-GKGVRLQSYKD 694
           R   GV+L +  D
Sbjct: 182 RNASGVKLINTAD 194


>gi|33316585|gb|AAQ04611.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 147

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617
            L  +T G+ Y   A  L        G+ +  L+     + I        Y+    L++ 
Sbjct: 10  DLFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYEDAPYLVLA 69

Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID 676
           +  G     + ++  +N   G   + +  E+++   V  +  + + +V  N + + FS  
Sbjct: 70  TQNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEEDLLLVSANGQSIRFSAT 129

Query: 677 Q--IPEMSRGK-GVRL 689
              +  M R   GV+ 
Sbjct: 130 DDALRPMGRATSGVQA 145


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/128 (50%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G   D  S AA RYTE+R+++ AE++L  + +  VD+   ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLP 120

Query: 174 NLLANGTS 181
           N+L NGT+
Sbjct: 121 NILLNGTT 128


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PH D S+YD+LVR+AQP+  RYP
Sbjct: 61  PHCDSSIYDTLVRMAQPWSLRYP 83


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 108 RYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           RYPLI GQGN+G   D  S AA RYTE+R+++ ++++L  +    VD+   ++  
Sbjct: 61  RYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGT 115


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 78/101 (77%)

Query: 37  TIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
           T   RAIPD+RDGFKPVHRRI++AMS+ G D G  +KK+A IVGEVIGK HPHGD +VYD
Sbjct: 3   TFISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYD 62

Query: 97  SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           S+VR+AQ F     L+ G GNFG++ GD AA+ RYTEAR+ 
Sbjct: 63  SMVRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARLQ 103


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYHTLVRMAQPWSLRYP 83


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEA 134
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193
           R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+GIAVGMAT IP 
Sbjct: 61  RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYYTLVRMAQPWSLRYP 83


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           VTE+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y++LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYNTLVRMAQPWSLRYP 83


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/114 (54%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 80/116 (68%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G      F+KSA+ VG VIG  HPHGD SVYD++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           Q +  R  LI   GN G++DGD AAA RYTEAR++++A+ +L  +D+  V+    +
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVETMLNF 116


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYGYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +ME +   +D+E  + +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L +WL +R+  L RR    +  +  R+ IL+GLL+A+LNIDE+I IIRN D P
Sbjct: 120 LNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+Y +LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYGTLVRMAQPWSLRYP 83


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIK 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  + + +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D P
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDSSIYDTLVRMAQPWSLRYP 83


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 7/174 (4%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
           +  +  I + Y  GRG  ++RA W  E+       I+++ +P+Q   S++I +IA+ + A
Sbjct: 2   ISPKSEIRKIYEQGRGSIKMRATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTA 56

Query: 293 KRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
           K++P+LEDIRDE+  +  +RIVL P++  +D D LM  +F  +D+E  + +NMN++ +  
Sbjct: 57  KKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDH 116

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            P V  L  IL EWL  RR  + RR  +R+  +  R+ IL+GL+IA+LNIDE+I
Sbjct: 117 KPAVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/89 (67%), Positives = 77/89 (86%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           PD+RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           PF  RY L+ GQGNFG+IDGDSAAA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/114 (55%), Positives = 87/114 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++ AA+KKSARIVG+VIGK HPHGD  VYD++VR+AQ F  RY LI GQGNFG++DG +A
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           AA RYTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE RMT +A  +++ + E+ VDF   Y+ +  EP + PS+ PNLL NG+ G
Sbjct: 61  YTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 6/172 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D 
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/96 (64%), Positives = 81/96 (84%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
             RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 96


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269
           P+  +  L+E + GPDFPTGGI++  +  I  +Y  GRG   VR++  +EE   G   I 
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVM-GKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIA 59

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           V E+PY V K+ LIE+IAEL+  KRI  +  I DES  +   +     R    ++++ ++
Sbjct: 60  VAELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 66/92 (71%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L +  +   ++   + E +L YA+S I  RA+PD+RDG KPVHRRI++ ++E G+    
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
            +KKSARIVG+V+GK HPHGD S+Y+++VR+A
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMA 94


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y+ G G  R +A +           +V+T++P+QV  + ++E+IA  +  ++I  +++I+
Sbjct: 4   YKSGNGSIRQQAVYEY----DNHSNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D+E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
           L EWL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN D 
Sbjct: 120 LNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 60/83 (72%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD+S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDRSIYDTLVRMAQPWSLRYP 83


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 76/100 (76%)

Query: 87  HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           +++D VD+ D Y+  +  P V P++ PNLL NG +GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 67/99 (67%), Gaps = 1/99 (1%)

Query: 15  ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG-LDFGAAFK 73
           EN +   L      RYL YALS I  RA+PD+RDG KPV RR+++ M     L   A ++
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           KSA++VG ++G+ HPHGD S+YD+LVRLAQ F  RYPL+
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 59/83 (71%)

Query: 28  ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87
             Y+ YA+S I  RA+PD+RDG KPVHRR+++AM + G      + KSAR V + +G  H
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 88  PHGDQSVYDSLVRLAQPFVQRYP 110
           PHGD S+YD+LVR+AQP+  RYP
Sbjct: 61  PHGDISIYDTLVRMAQPWSLRYP 83


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 84/107 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           QGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D ++  
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHDGT 107


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 134/349 (38%), Gaps = 34/349 (9%)

Query: 93  SVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAYRYTEARMTQVAELILQGVD 148
           S+  ++V LAQ F       L+   G FG     G  +A+ RY    ++ +A L+   VD
Sbjct: 2   SLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVD 61

Query: 149 EDAVDFRDTYNEE-DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207
           ++ + +   Y++    EP  +    P +LANG  GI  G A+ IP+++V+EI      ++
Sbjct: 62  DNLLKY--NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRML 119

Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           +  E            P  P+      + + + ++  +  G   +     +E        
Sbjct: 120 NGEE----------PLPMLPSYKGFKGTIDELAKNQYVNNGEVAIIDSTTIE-------- 161

Query: 268 IVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
             +TE+P +       E + E+++    K   L+ D ++   +     +         + 
Sbjct: 162 --ITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREA 219

Query: 325 LMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
               +  +  ++     N  VL      + +   +  ILKE+   R +    R  + +  
Sbjct: 220 EAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGM 279

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           +    E  K    A   +++I   +  E+KPK  ++          D +
Sbjct: 280 L--GAESAKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPV 326


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           PLI GQGN+G   D  S AA RYTE+R+++ ++++L  +    VD+   ++  
Sbjct: 61  PLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGT 113


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 36  STIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVY 95
           S I  RA+PD+RDG KPVHRRI++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 96  DSLVRLAQPFVQRYPLISGQGNF 118
           +S+VR+AQPF  RY L+ G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPV RRI++AMSE+GL+  A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           PL+ GQGN+G   D  S AA RYTE+R+++ AE++L  +    VD+   ++  
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGT 113


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G   D  S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/108 (55%), Positives = 82/108 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
            RM ++ + +L  +D++ V+F   Y+ E   P V P++ P LLANG+S
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 108


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 85/110 (77%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++DG +AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           YTE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  YTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 110


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +M   G      + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   SMDREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +IDGD+ AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P V P++ P
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/90 (65%), Positives = 73/90 (81%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
             RA+PD RDG KPVHRRI++ MSE+G+ + A  KKSARIVG+V+GK HPHGD SVY+++
Sbjct: 1   VSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAM 60

Query: 99  VRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           VR+AQ F  RYPLI G GNFG++DGD AAA
Sbjct: 61  VRMAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 87/112 (77%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ 
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GQGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y++LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|284052889|ref|ZP_06383099.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 350

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 115/289 (39%), Gaps = 48/289 (16%)

Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG-------DSLKIALHAH 558
           +   L+  +   E   V ++ RG++R +  H  +LS    +E        D    +    
Sbjct: 44  ESKILRPQLPAVEETLVEMTLRGYVRRVTPH--NLSRPQSREDITIEAIDDFPVTSYLTT 101

Query: 559 TTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD--------IVTAFV- 607
           T + +++++  GKAY L   ++ S   +  G  +  L+  +  +D        IV AF+ 
Sbjct: 102 TAETLVIINRMGKAYPLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLG 161

Query: 608 --------------------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647
                               +     L+++S++G    +  ++ +  + +G T +K+   
Sbjct: 162 AGLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDN 221

Query: 648 EKMKLV-VKVTGDHVAVVGENRKLLI--FSIDQIPEMSR-GKG-VRLQSYKDGGISDVIC 702
           +++    +  TGD V +     +LL    + DQIP M R  +G V  +  K+  +   I 
Sbjct: 222 DELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCIT 281

Query: 703 FKICEGLT---WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748
                 L     +  + + Y +  +       +RGG+G+ + +   R+ 
Sbjct: 282 LSSTGELNNKFILLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRND 330


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 79/112 (70%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++YD+LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+AVDF   Y+++  EP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/128 (48%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 115 QGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           QGN+G   D  S AA RYTEA++++ AE++L  + +  VD++  ++    EP + P++ P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 174 NLLANGTS 181
           ++L NG +
Sbjct: 121 HILLNGVT 128


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSAR V + +G+ HPHGD ++Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182
           YTE ++T +A  +++ + E+ VDF   Y+ + SEP V PS+ PNLL NG+ G
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 77/102 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184
           +L  +++D VD+ D Y+  +  P V P++ PNLL NG +GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 72/97 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD+RDG KPV RRI++AM   G     AF+KSA+ VG VIG  HPHGD SVY+++VR++
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           Q +  R PLI   GN G++DGD AAA RYTEAR++++
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSKL 97


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76
          +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+KKSA
Sbjct: 8  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 77 RIVGEVIGKLHPHGDQSVYDS 97
          R+VG+VIGK HPHGD +VYD+
Sbjct: 68 RVVGDVIGKYHPHGDSAVYDT 88


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/109 (54%), Positives = 83/109 (76%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSARIVG+VIGK HPHGD +VY+++VR+A  F  RY LI GQGNFG++DG +AAA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           TE RM +++  +L  ++E+ V+F   Y+  + EP+V P++FP LL NG+
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 109


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 77/97 (79%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L  
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLAD 97


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR+AQ F  RYPL+ G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/104 (54%), Positives = 82/104 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|325663390|ref|ZP_08151840.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470844|gb|EGC74074.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 214

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM 681
                 ++     + G   + +  ++++  V     +  + +V +  + + F    +   
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRST 60

Query: 682 SRGK-GVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
            R   GVR  +  D    +VI  ++  +G   + ++ +   +           RGG G  
Sbjct: 61  GRTSMGVRGMNLSD--RDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVK 118

Query: 740 VPKGFPRSGKFLS 752
             K   ++G  + 
Sbjct: 119 CYKITEKTGNVIG 131



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
                   L+A+  +E D L           I++++  G+       ++ S       ++
Sbjct: 9   YANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRSTGRTSMGVR 68

Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-- 649
            + +L+   +++   ++     LL+ S KG        E     R GK        EK  
Sbjct: 69  GM-NLSDRDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITEKTG 127

Query: 650 -MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
            +  V  V  D  + ++     ++      I  + R   GV+L +  
Sbjct: 128 NVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLD 174


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 83/104 (79%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 64/81 (79%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/113 (53%), Positives = 87/113 (76%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302
           Y  G G  R +A +  +  G     +V+T++P+QV  + ++E+IA  +  ++I  ++ I+
Sbjct: 4   YXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIKXIQ 59

Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
           DES   E V+IVL+      +   +M  +   +D E  F +NMN++ +   PQV  L  I
Sbjct: 60  DESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDNRPQVKNLLDI 119

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
           L +WL +R+  L RR    +  +  R+ IL+GLLIA+LNIDE+I IIRN
Sbjct: 120 LNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRN 168


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 78/93 (83%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           Y L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 93


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 65/81 (80%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +YD++VR+AQ F  RYPL++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y ++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 85/104 (81%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           VHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 113 SGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 86/111 (77%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           QGNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 77/97 (79%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KPVHRR++ AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 110 PLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
            L+ GQGNFG++DGDSAAA RYTE RM ++A  +L  
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLAD 97


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|153875483|ref|ZP_02003265.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
 gi|152068053|gb|EDN66735.1| DNA topoisomerase IV, A subunit [Beggiatoa sp. PS]
          Length = 173

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 9/157 (5%)

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659
           +   + D+    L+ S  G  F++   ++    + GK  L +  + K+   + +     +
Sbjct: 1   MHVLLGDAEVSFLLASDAGYGFLINLEDLYTKNKAGKAILTLPPDAKILRPLPIAEPETE 60

Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY------KDGGISDVICFKICEGLTWID 713
           + AVV     L I  + ++P + +GKGV+L             +  +        +  + 
Sbjct: 61  YYAVVTSAGYLSIVPVLELPRLPKGKGVKLLGIPAKSKKDKESVVALTLLNPEIDILTLY 120

Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
              R     E D+  +  +R   G  +P+GF +  + 
Sbjct: 121 VGKRHLTLKERDIEAYTMERSRRGQKLPRGFQKVDRI 157


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A+S I  RA+PD+RDG KPVHRRI++ + E G+    ++KKSARIVG+V+GK HPHGD S
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 94  VYDSLVRLAQPFVQRYPLISG 114
           +Y+++VR AQ F  RYPL+ G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 1/120 (0%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 112 ISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           + GQGN+G   D  S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P+
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|153873423|ref|ZP_02002012.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
 gi|152070113|gb|EDN67990.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
          Length = 203

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFS 674
           + ++ G                G   + +    K+  V    G   V +  ++ K + F+
Sbjct: 1   MATAYGTVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYNRSENDLLGWLGK 732
            +++  M R  +GVR           VI   I  EG   + +    + +        +  
Sbjct: 61  EEKVRSMGRTARGVRGIRLMPN--DKVISLIITREGGMILTATVNGFGKRTQIDDYPVKG 118

Query: 733 RGGVGSLVPKGFPRSGKFLSS 753
           RG  G +  K   R+GK + +
Sbjct: 119 RGIKGVIAIKTSDRNGKVVGA 139



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 6/171 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           I   +  S  + A+   +G+ L           ++L S DGKA       + S       
Sbjct: 14  INFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFNEEKVRSMGRTARG 73

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSS- 646
           ++  I L  N  +++  +      +L  +  G     +  +     R  KG   +K S  
Sbjct: 74  VRG-IRLMPNDKVISLIITREGGMILTATVNGFGKRTQIDDYPVKGRGIKGVIAIKTSDR 132

Query: 647 EEKMKLVVKVTGDHVAV-VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
             K+   V+V  D   V +     L+   ++ I  +SR  +GV L   K  
Sbjct: 133 NGKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVISRNTQGVHLIRLKKD 183


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 80/101 (79%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 101


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 78/102 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
                +G+D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNF
Sbjct: 4   VYACVLGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 63

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 105


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 44/239 (18%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L +++ + V+ +  +    + ++ +   ER+IP L DGFKP  R+++ A  +     G  
Sbjct: 52  LYDKDTRFVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFKRSDKHGVK 110

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
             + A  V ++    + HG+QS+  ++V LAQ +                 G  +A+ +Y
Sbjct: 111 VAQLAGGVADMSA--YHHGEQSLMTTIVHLAQDY----------------GGKDSASAQY 152

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191
              +++ V   +    D++ + F    N+   EP  +    P +L NG  GI  G  T+I
Sbjct: 153 IFTQLSPVTRTLFPSHDDNVLRFLYEENQRI-EPEWYCPISPMVLVNGAQGIDTGWRTNI 211

Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
           P++N +E+ +    L                        I  E ++++   Y+  RG  
Sbjct: 212 PNYNPRELVKNIKRL------------------------IAGEPQKALAPWYKNFRGKI 246


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|270719656|ref|ZP_06223336.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270315398|gb|EFA27669.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 181

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            ++ L+  QV+AIL LRL  L  +   ++  E + LL +   +  +L+S ++    I  E
Sbjct: 47  EQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREE 106

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------ 532
           + EVK  F              E++ A      + +I +E + V +S+ G+++       
Sbjct: 107 LEEVKAQFGDD--------RLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDY 158

Query: 533 --LKSHSVDLSALHFKEGDSLK 552
              +      SA   KE D ++
Sbjct: 159 EAQRRGGKGKSATKMKEEDFIE 180


>gi|148645150|gb|ABR01099.1| GyrA [uncultured Geobacter sp.]
          Length = 131

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DG 695
              + +   +K+  V    G   V +   N K + F    +  +SR  +GVR  S   D 
Sbjct: 1   IIAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLDADD 60

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
            +  +       G T        + +           RGG G +  K   R+G  +
Sbjct: 61  VVIGMEIINDMSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVV 116



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           ++L+    ++   + D    +L+ +S G +   +ES++   +R  +G   + + +++ + 
Sbjct: 4   VNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLDADDVVI 63

Query: 652 ---LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS--YKDGGISDVICFKI 705
              ++  ++G  +  V EN       + +    SR GKG+       ++G + D++    
Sbjct: 64  GMEIINDMSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQVND 123

Query: 706 CEGLTWID 713
              L  I 
Sbjct: 124 ENDLMLIT 131



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           A++  EGD L           +LL +++GK+      ++ +       ++ +  L+ +  
Sbjct: 3   AVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGM-SLDADDV 61

Query: 602 IVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--- 656
           ++   + +      L  V+  G     E SE    +R GK  + + + E+   VV +   
Sbjct: 62  VIGMEIINDMSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQV 121

Query: 657 -TGDHVAVVG 665
              + + ++ 
Sbjct: 122 NDENDLMLIT 131


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPFVQRYPLISGQGNFG 119
           +AQ F  RYPL+ GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/98 (54%), Positives = 74/98 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RM 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
           ++A  +L  ++++ VD+   Y+  +  P V P+K PNL
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
             L+ G GNFG++DGDS AA RYTEA+M++++
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/112 (52%), Positives = 87/112 (77%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|148645152|gb|ABR01100.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + +   +K+  V    G   V +  ++ K + F  + +  + R  +GVR  + +D  
Sbjct: 1   IIAVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLEDDD 60

Query: 697 ISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  VI   I        T        Y +           RGG G +  K   R+G  +
Sbjct: 61  V--VIGMTILNENFTDSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVV 117



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMK 651
           ++L+    ++T  + D    +L+ S  G     +E ++    R  +G   + +  ++ + 
Sbjct: 4   VNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLEDDDVVI 63

Query: 652 LVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS--YKDGGISDVICFK 704
            +  +    T   +  V EN       I +    SR GKGV       ++G + D+    
Sbjct: 64  GMTILNENFTDSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQVS 123

Query: 705 ICEGLTWID 713
               L  I 
Sbjct: 124 DENDLMLIT 132



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 8/131 (6%)

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           A++  EGD L           +LL S  GK       ++ +       ++ +  L  +  
Sbjct: 3   AVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGM-TLEDDDV 61

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           ++   + +       +  V+  G     E SE    +R GK  + + + E+   VV +  
Sbjct: 62  VIGMTILNENFTDSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQ 121

Query: 657 --TGDHVAVVG 665
               + + ++ 
Sbjct: 122 VSDENDLMLIT 132


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 85/110 (77%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|213585067|ref|ZP_03366893.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 125

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  +L S  +    I  E+  +++ F        RRT   E++        + +I +
Sbjct: 1   IAELLHILGSADRLMEVIREEMELIRDQFGDE-----RRT---EITANSADINIEDLISQ 52

Query: 518 EPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + V +S++G+++          +      SA   KE D +   L A+T D IL  S+ 
Sbjct: 53  EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 112

Query: 570 GKAYTLPAGNLLS 582
           G+ Y +    L  
Sbjct: 113 GRLYWMKVYQLPE 125



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEE-KMKLV 653
            ++ DI    +      ++ +S +G       ++  A  R  KGK+  ++  E+   +L+
Sbjct: 39  ANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLL 98

Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPE 680
           V  T D +       +L    + Q+PE
Sbjct: 99  VANTHDTILCFSSRGRLYWMKVYQLPE 125


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            RMT++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 78/100 (78%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 77/91 (84%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 86/110 (78%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++   EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|71899875|ref|ZP_00682024.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71730392|gb|EAO32474.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 156

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 9/150 (6%)

Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665
           D+    ++ SS G  FI     +    + GK  + ++   ++  +  +T    D +  V 
Sbjct: 5   DNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVT 64

Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQ-----SYKDGGISDVICFKICEGLTWIDSAGRSYN 720
               LL  +  ++PE+ +GKG +L            +  VI       L  + S  R+  
Sbjct: 65  SAGNLLAIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTL-LLYSGERTMR 123

Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
            S  DL  +L  RG  G L+P+G+ +    
Sbjct: 124 LSFKDLEAYLDTRGSRGRLLPRGWHKIDTL 153


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 3   VDNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61
            DN S+     +     A++L    E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM
Sbjct: 2   DDNTSDLFAGSDAPGADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAM 61

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           +EMGL   A   KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F  R
Sbjct: 62  NEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRRI+++MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
             L+ G GNFG++DGDS AA RYTEA+M++++
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 78/99 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 79/102 (77%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ +  + 
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGKTVKW 105


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 77/99 (77%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|326581989|gb|ADZ96943.1| DNA gyrase A subunit [Klebsiella pneumoniae]
          Length = 134

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              ++ LTE Q  AIL+LRL+ L  LE  ++  E  +LLA+  ++  +L S ++    I 
Sbjct: 14  HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIR 73

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536
            E+  +++ F        RRT   E++        + +I +E + V +S++G+++     
Sbjct: 74  EELELIRDQFGDK-----RRT---EITANPADINIEDLINQEDVVVTLSHQGYVKYQPLS 125

Query: 537 SVDLS 541
             +  
Sbjct: 126 DYEGQ 130


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 76/100 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 77/91 (84%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 79/103 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
              S +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 4   VYASRIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 63

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ +
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 106


>gi|332711872|ref|ZP_08431802.1| DNA topoisomerase [Lyngbya majuscula 3L]
 gi|332349200|gb|EGJ28810.1| DNA topoisomerase [Lyngbya majuscula 3L]
          Length = 86

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 54/80 (67%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
          N L   NV   +L   ++  YL YA+S I  RA+PD+RDG KPVHRRI++AM E+GL   
Sbjct: 6  NLLENSNVIPTALHLEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65

Query: 70 AAFKKSARIVGEVIGKLHPH 89
            ++K AR+VG+V+GK+ P 
Sbjct: 66 RPYRKCARVVGDVLGKISPP 85


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 79/100 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 77/91 (84%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           L+ GQGNFG+IDGDSAAA RYTE R+ ++A 
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|325068317|ref|ZP_08126990.1| DNA topoisomerase [Actinomyces oris K20]
          Length = 171

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433
            FR+     R  ++ GLLIA L+IDE+IA+IR+ D     +  ++  F LTE Q   IL 
Sbjct: 2   RFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQVFDLTEPQAGYILE 61

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           L+LR L K    +++ E D L  E E ++++L         ++ E+  V E F       
Sbjct: 62  LQLRRLTKFSVIELEKERDELAREIEALEAILADDVLLRRVVSRELAAVAEQFGTP---- 117

Query: 494 RRRTTFCEVS 503
            RRT   E S
Sbjct: 118 -RRTVLLEAS 126


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 80/107 (74%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           R I    S +G D+  A+KKSAR+VG+VIGK +PHGD +VY ++VR+AQPF  RY L+ G
Sbjct: 1   RGIRLYASRIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           QGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ +
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 62  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 121


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 61  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 120


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 78/103 (75%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARIVG+V+GK HPHGD S+Y ++  +AQ F  RY L+ G GNFG++DGD  AA RYTEA
Sbjct: 1   SARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           RM+++A  +L+ ++++ VD++  Y++ ++EP V P++ PNLL 
Sbjct: 61  RMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLV 103


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 27  EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86
           +  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK 
Sbjct: 3   KNAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 62

Query: 87  HPHGDQSVYDSLVRLAQPFVQ--RYPLISGQGNFGNIDGDS 125
           HPHGD + Y+++V +AQPF    R+ ++ G G    I   S
Sbjct: 63  HPHGDSACYEAMVLMAQPFSTVIRWLMVRGTGARRTIRNRS 103


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +       + KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           DSAAA RYTEARM+++A  ++  +D++ VDF+  Y+E+
Sbjct: 61  DSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEK 98


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 84/105 (80%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++ M ++G+   +A KKSARIVGEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
           GNFG++DGDS AA RYTEARM +++E I+  ++++ VDF+  +++
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDD 105


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 63/84 (75%)

Query: 33  YALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92
           Y++  I +RA+P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD 
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 93  SVYDSLVRLAQPFVQRYPLISGQG 116
           + Y+++V +A PF  R PL+ G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            ++A  ++  ++++ VDF D Y+  +  P V P+K PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 77/107 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           ++   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+A
Sbjct: 1   NWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           AA RYTE RM ++A  +L  ++++       Y+  +  P V P+K P
Sbjct: 61  AAMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 61/86 (70%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYT 132
            RYPL+ GQGNFG+   D  AA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/100 (55%), Positives = 78/100 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 3   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ ++
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGKN 102


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNL 175
             ++  ++++ VDF D Y+  +  P V P+K PNL
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181
           D  S AA RYTE+R+++ +EL+L  + +   D+   ++    EP + P++ PN+L NGT+
Sbjct: 62  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 121


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 77/101 (76%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSE 164
           DSAAA RYTE R+ ++A  ++  ++++ VDF D Y+     
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNMIF 104


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 71/111 (63%)

Query: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
           +  +  ++   + +       AL ERYL YALSTI  R++PDLRDG KPVHRR++  M +
Sbjct: 3   EPTTTDDSDEFDTIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQ 62

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           + LD  + FKKSAR+VGEVIGK HPHGD + YD++VRLAQ          G
Sbjct: 63  LKLDPSSGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQISRFAIRWSRG 113


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 82/116 (70%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A+ +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 81/116 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD S+YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 80/116 (68%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F   F+KSA+ VG V+G  HPHGD  +YD++VR++Q +  R  LI   GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
            G++DGD AAA RYTEAR++++A  +LQ +D++ V F   +++ + EP V P+ FP
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 79/101 (78%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           +  +G+D+  A+KKSAR+VG+V G+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 7   VRILGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 66

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ +
Sbjct: 67  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 71/99 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + KSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGD+ 
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 81/101 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 101


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 75/98 (76%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RM
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
           T++A  +L  +++D VD+ D Y+  +  P V P++ PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 56/76 (73%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          + +  V++   L++ YL YA+S I  RA+PD RDG KPVHRR++ AMSE+G D+   +KK
Sbjct: 6  KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 75 SARIVGEVIGKLHPHG 90
          SAR+VG+VIGK HP G
Sbjct: 66 SARVVGDVIGKYHPPG 81


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD AAA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           E RM++VA  +L  ++++ VDF   Y+E +  P+V PS+ 
Sbjct: 61  EVRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSRV 100


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 80/102 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
            GNFG++DGDSAAA RYTEARM+++A  +L+ ++++ VDF D
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVD 102


>gi|148645148|gb|ABR01098.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 639 KTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
              + +   +K+  V    G   V +  +N K + F  + +  + R  +GVR    +D  
Sbjct: 1   IIAVNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLEDDD 60

Query: 697 ISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           +  VI   I        T        Y +           RGG G +  K   R+G  +
Sbjct: 61  V--VIGMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVV 117



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
           A++  EGD L           +LL S +GK+      ++ +       ++ ++ L  +  
Sbjct: 3   AVNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMM-LEDDDV 61

Query: 602 IVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656
           ++   + +       L  V+  G     E +E    TR GK  + + + E+   VV +  
Sbjct: 62  VIGMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVVDIKQ 121

Query: 657 --TGDHVAVVG 665
               + + ++ 
Sbjct: 122 VNDDNDLMLIT 132


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 79/105 (75%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 75/99 (75%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          + + N+  V+L   ++  ++ YA+S I  RA+PD+RDG KPVHRRI++ M+E+G+     
Sbjct: 6  MQDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 65

Query: 72 FKKSARIVGEVIGKLHPHGDQS 93
           KKSARI G+V+GK HPHGD S
Sbjct: 66 HKKSARITGDVMGKYHPHGDSS 87


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 77/97 (79%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           +V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA RYTEARM+++A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
             +L+ ++++ VDF D Y+  + EP+V P++FPNLL 
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLV 97


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQG 146
           PF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 104


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 44  PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103
           P + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 104 PFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQG 146
           PF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 104


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE RMT+
Sbjct: 1   VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTK 60

Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           +A  +L  +++D VD+ D Y+  +  P V P++ P
Sbjct: 61  LAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
           EV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
           E I+  ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 30/236 (12%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAY 129
           + A  V E+    + HG+ S+  +++ LAQ F       L+   G FG     G  +A+ 
Sbjct: 2   QLAGSVAEMSS--YHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+    D+  + F    + +  EP  +    P +L NG  GI  G + 
Sbjct: 60  RYIFTMLSPLARLLFPSKDDHTLRFLY-DDNQRVEPEWYILIIPMVLINGAEGIGTGWSC 118

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            IP+ +V+E+      L+D  E            P  P+      + E +  +  +  G 
Sbjct: 119 KIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQYVINGE 168

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIR 302
             +     +E          +TE+P +       E++ E ++    K  PL+ D R
Sbjct: 169 VAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYR 214


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 76/101 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 70/91 (76%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            +KK+AR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA  
Sbjct: 1   PYKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMP 60

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           YTE R+ ++A  ++  ++++ VDF D Y+  
Sbjct: 61  YTEIRLAKIAHGLMADLEKETVDFVDNYDGT 91


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSAAAYR 130
            RYPL+ GQGNFG+   D  AA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFGNIDGDSA 126
           Q F  RYP I GQGNFG+IDGD A
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/99 (52%), Positives = 71/99 (71%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
                + KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD+ 
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           AA RYTE RM ++ + +L  +D++ V+F   Y+ E   P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 80/105 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|325989385|ref|YP_004249084.1| similar to DNA gyrase subunit alpha (probable fragment) [Mycoplasma
           suis KI3806]
 gi|323574470|emb|CBZ40120.1| similar to DNA gyrase, A subunit (probable fragment) [Mycoplasma
           suis]
          Length = 335

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 25/222 (11%)

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---------HGEAIQLLIDLN- 597
            D ++  +   + D +L+++  GK Y   A  LL  +            + ++ L+DL+ 
Sbjct: 44  DDMIRDVIALSSNDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDS 103

Query: 598 ----HNQDIVTAFVYDSTCKL-----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                ++ I+     + +  L      + S  G    ++       ++ G   + +  E+
Sbjct: 104 STFRDDEQIIKIINVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGED 163

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICF 703
           ++   + V   D + +     +++ F    + ++ +     +G++L + K     ++I  
Sbjct: 164 EVVSALIVRDADEILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGELISA 223

Query: 704 KI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
               +G            +        +  RG  G L  KG+
Sbjct: 224 SSNADGKEVFVLTNLGKGKWVYIDHFRMTSRGVAGVLSQKGY 265



 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 84/244 (34%), Gaps = 26/244 (10%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S  +        ++ V+E+    +   R      ++   + +              + 
Sbjct: 83  LSSENKLLQ-----LQHVRELLDLDSSTFRDDEQIIKIINVEPSKYL-----DSSFLFLA 132

Query: 525 SNRGWIRSLKSHSVDLSA------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           S  G I+ +K  +   ++      +  +  D +  AL     D ILL S+ G+     + 
Sbjct: 133 SKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVVRFKSI 192

Query: 579 NLL--SGRGHG-EAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +L        G   I+L+      + ++++A       ++ V+++ G    V        
Sbjct: 193 DLRDVGKTAMGVRGIKLVNSKGEKEGELISASSNADGKEVFVLTNLGKGKWVYIDHFRMT 252

Query: 635 TR--KGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
           +R   G    K   +E     + +    + + ++    K+    ++ + +   R   GV 
Sbjct: 253 SRGVAGVLSQKGYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVS 312

Query: 689 LQSY 692
           +   
Sbjct: 313 IMKL 316


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 76/101 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS A+ RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 38/170 (22%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
             ++    R    ++++ +++  + ++  F +NM  L     P++M L  I+  ++ HRR
Sbjct: 1   MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVAL-HHGQPKIMNLKDIISAFVRHRR 59

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------- 416
           EV+ RR+ F ++    R  IL+ L IA  NID II +IR    P                
Sbjct: 60  EVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGN 119

Query: 417 ------------------------MVSRFSLTENQVDAILNLRLRSLRKL 442
                                      ++ LTE Q  AIL+LRL+ L  L
Sbjct: 120 VAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGL 169


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 76/99 (76%)

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139
           GEV+GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM ++
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178
           +E I+  ++++ VDF+  +++   EP V P+K P LL N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 27/235 (11%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGDSAAAY 129
           + A  V E+    + HG+Q++  ++V LAQ F       L+   G FG     G  AA+ 
Sbjct: 2   QLAGSVAEMSA--YHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189
           RY    ++ +A L+   VD++ + F    + +  EP  +    P +L NG  GI  G A 
Sbjct: 60  RYIFTMLSSLARLLFPAVDDNLLKFLY-DDNQRVEPEWYIPIIPMVLINGAEGIGTGWAC 118

Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249
            +P+++ +EI +    +++  +            P  P       + + + ++     G 
Sbjct: 119 KLPNYDAREIVDNVRRMLEGLD----------PHPMLPNYKNFKGTIQELGQNQYAVSGE 168

Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
             V               +  TE+P +       E++ E ++         I D 
Sbjct: 169 IFVV----------DRNTVETTELPVRTWTQVYKEQVLEPMLNGTDKTPALISDY 213


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 80/105 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            AAA RYTEARM+++A  +L+ ++++ VDF+  Y++ + EPVV P
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|325972892|ref|YP_004249956.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
 gi|323651494|gb|ADX97576.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
          Length = 335

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 82/222 (36%), Gaps = 25/222 (11%)

Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---------HGEAIQLLIDLN- 597
            D ++  +   + D +L+++  GK Y   A  LL  +            + ++ L+DL+ 
Sbjct: 44  DDMIRDVIALSSNDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDS 103

Query: 598 ----HNQDIVTAFVYDSTCKL-----LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
                ++ I+     + +  L      + S  G    ++       ++ G   + +  E+
Sbjct: 104 STFRDDEQIIKIINVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGED 163

Query: 649 KMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICF 703
           ++   + V   D + +     +++ F    + ++ +     +G++L + K     ++I  
Sbjct: 164 EVVSALIVRDADEILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGELISA 223

Query: 704 KI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744
               +G            +  +     +  RG  G L  KG+
Sbjct: 224 SSNADGKEVFVLTNLGKGKWVHIDHFRMTSRGVAGVLSQKGY 265



 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 84/244 (34%), Gaps = 26/244 (10%)

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           L+S  +        ++ V+E+    +   R      ++   + +              + 
Sbjct: 83  LSSENKLLQ-----LQHVRELLDLDSSTFRDDEQIIKIINVEPSKYL-----DSSFLFLA 132

Query: 525 SNRGWIRSLKSHSVDLSA------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
           S  G I+ +K  +   ++      +  +  D +  AL     D ILL S+ G+     + 
Sbjct: 133 SKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVVRFKSI 192

Query: 579 NLL--SGRGHG-EAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634
           +L        G   I+L+      + ++++A       ++ V+++ G    V        
Sbjct: 193 DLRDVGKTAMGVRGIKLVNSKGEKEGELISASSNADGKEVFVLTNLGKGKWVHIDHFRMT 252

Query: 635 TR--KGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE-MSRGK-GVR 688
           +R   G    K   +E     + +    + + ++    K+    ++ + +   R   GV 
Sbjct: 253 SRGVAGVLSQKGYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVS 312

Query: 689 LQSY 692
           +   
Sbjct: 313 IMKL 316


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 75/101 (74%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+ Q F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/96 (56%), Positives = 73/96 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 73/97 (75%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           GK HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I
Sbjct: 1   GKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEI 60

Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180
           +  ++++ VDF+  +++   EP V P+K P LL NG 
Sbjct: 61  MADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGG 97


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 75/101 (74%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS A  RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|126797746|gb|ABO27392.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +    + ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMKIVKDELIAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|260890949|ref|ZP_05902212.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859502|gb|EEX74002.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 196

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRGK-G 686
                + GK  +K++ ++++  +   +G   D V     N   + FS   +  M  G  G
Sbjct: 2   FDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGTGAAG 61

Query: 687 VRLQSYKD-GGISDVICFKI---CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
           V+  + +D   I            + +  +      Y +        L  RGG G +  K
Sbjct: 62  VKGITLRDKDKIVGAAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAK 121

Query: 743 GFPRSGKFL 751
              ++GK +
Sbjct: 122 LNDKTGKIV 130



 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 14/190 (7%)

Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLL--STDGKAYTLPAGNLLSGRGHGEAIQ 591
                   A+   + D +        T    +   + +G A      ++ S  G G A  
Sbjct: 4   NIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSM-GTGAAGV 62

Query: 592 LLIDLNHNQDIVTAFVYD-----STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646
             I L     IV A + +        ++L ++ +G     + SE    +R GK  +    
Sbjct: 63  KGITLRDKDKIVGAAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKL 122

Query: 647 EEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK-DGGISDV 700
            +K   +V V      D + ++     L+  S++ +  + R   GVR+   + +  I+ V
Sbjct: 123 NDKTGKIVDVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKIASV 182

Query: 701 ICFKICEGLT 710
           +       L+
Sbjct: 183 VKITEEPELS 192


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINADGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +  + +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMSIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLATYRAQRRGGK 170


>gi|89515127|gb|ABD75393.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797766|gb|ABO27402.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797768|gb|ABO27403.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMQIVKDELGAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|89515115|gb|ABD75387.1| DNA gyrase subunit A [Sinorhizobium arboris LMG 14919]
 gi|126797744|gb|ABO27391.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 401 DEIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            ++ A+IR  D P+      + ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E 
Sbjct: 31  HDVEALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEI 90

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +E
Sbjct: 91  KDYLDILSSRLRIMKIVKDELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIARE 142

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFK 546
            + V +S+ G+I+ +   +        K
Sbjct: 143 DMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|89515141|gb|ABD75400.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515143|gb|ABD75401.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   ++  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINADGTYNLSEEQARAILDLRLQRLTALGRDEVGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +  + +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMSIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLATYRAQRRGGK 170


>gi|89515129|gb|ABD75394.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515131|gb|ABD75395.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515133|gb|ABD75396.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +  +   ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINVDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMAIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|89515135|gb|ABD75397.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMAIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/79 (65%), Positives = 67/79 (84%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|126797770|gb|ABO27404.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  +++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMQIVKDELGAIRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|89515121|gb|ABD75390.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|89515123|gb|ABD75391.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797756|gb|ABO27397.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|126797758|gb|ABO27398.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797760|gb|ABO27399.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +    + ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|149393056|gb|ABR26590.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393058|gb|ABR26591.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393060|gb|ABR26592.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393062|gb|ABR26593.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
          Length = 176

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +  + +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMSIVKQELEAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
           MAT+IP HN+ E+ +  +ALI++P I + +L++ I GPDFPTG  I+  R  I  +Y  G
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETG 59

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           RG   +R    +E +      I++TEIPYQV K+ +IE
Sbjct: 60  RGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 76/101 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 78/99 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GDSAAA RYTE R+ ++A  ++  ++++ VDF + Y+ +
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYDGK 100


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 76/101 (75%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+ L     ++KSARIVG+V+GK HPHG+ +VY ++VR+AQ F  R  L+ G GNFG+
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           +DGDS AA RYTEA+M++++  +L+ ++++ VDF+  ++E 
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF
Sbjct: 2   IGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPF 61

Query: 106 VQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQG 146
             RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  
Sbjct: 62  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 103


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           D++VR+AQPF  RY     QGNF +IDGDSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 1   DTIVRMAQPFSLRYCW-RWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188
           D Y+  +  P V P+K PNLL NG+SGIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 71/95 (74%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172
           ++A  ++  ++++ VDF D Y+  +  P V P+K 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKI 95


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 75/97 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            R+ ++A  ++  ++++ VDF D Y+  +  P V P+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 72/95 (75%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144
           K HPHGD+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
             ++++ VDF+  +++   EP V P+K P LL NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|126797782|gb|ABO27410.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 176

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 70/102 (68%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
              ++F KSA+IVG+V+G  HPHGD ++YD++VRLAQP+  RYPL+SGQGNFG      A
Sbjct: 3   RPDSSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDLGA 62

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168
           AA RYTEARM  +A  +++ + E+ VDF   Y+    EP + 
Sbjct: 63  AAPRYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 68/79 (86%)

Query: 49  GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108
           G KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  R
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 109 YPLISGQGNFGNIDGDSAA 127
           Y L+ GQGNFG+IDGDSAA
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|89515113|gb|ABD75386.1| DNA gyrase subunit A [Sinorhizobium fredii]
 gi|126797738|gb|ABO27388.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
          Length = 176

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
            R+ ++A  ++  ++++ VDF D Y+  +  P V P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 95


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 72/94 (76%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +     +KKSAR VG+VIGK HPHGDQ+VY ++VR+AQ F  RY L+ G GNFG+IDGDS
Sbjct: 1   MTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           AAA RYTEAR+++++  +L+ +D++ VDF   Y+
Sbjct: 61  AAAMRYTEARLSKISYELLKYIDKETVDFVPNYD 94


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 50/78 (64%)

Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
          V+E++    L   + + +L YA S I  RA+PD RDG KPV RRI++ M EM L     +
Sbjct: 17 VKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPY 76

Query: 73 KKSARIVGEVIGKLHPHG 90
           KSAR+VGEV+GKLHP  
Sbjct: 77 MKSARVVGEVMGKLHPQV 94


>gi|126797786|gb|ABO27412.1| DNA gyrase subunit A [Sinorhizobium sp. Le39]
 gi|126797788|gb|ABO27413.1| DNA gyrase subunit A [Sinorhizobium sp. Lc56]
          Length = 176

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 55/80 (68%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
           RDG KPVHRR+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+ 
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 107 QRYPLISGQGNFGNIDGDSA 126
            RYPL+ GQGNFG+   D  
Sbjct: 61  LRYPLVDGQGNFGSPGNDPP 80


>gi|89515111|gb|ABD75385.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
 gi|126797784|gb|ABO27411.1| DNA gyrase subunit A [Sinorhizobium sp. GRX8]
          Length = 176

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 96


>gi|89515109|gb|ABD75384.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797734|gb|ABO27386.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797736|gb|ABO27387.1| DNA gyrase subunit A [Sinorhizobium americanum]
          Length = 176

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|126797780|gb|ABO27409.1| DNA gyrase subunit A [Sinorhizobium sp. BR816]
          Length = 176

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|37542701|gb|AAM13689.1| DNA gyrase [Mycobacterium celatum]
          Length = 147

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-------IDLNHNQDIVTAFV 607
               T D   + S+  +A           R  G     +               ++    
Sbjct: 1   FVCSTHDW--ICSSPPRAGCTAPRRTTCPRRRGPRAASMWANWWAFKPEERIAQVIQIRS 58

Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666
           Y+    L++ +  G     + ++  +N   G   + +   +++   V  +  D + +V  
Sbjct: 59  YEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDGDELVGAVLCSADDDLLLVSA 118

Query: 667 NRKLLIFSIDQ--IPEMSRGK-GVRLQS 691
           N + + FS     +  M R   GV+   
Sbjct: 119 NGQSIRFSATDEALRPMGRATSGVQGMR 146



 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 643 KVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-I 697
               EE++  V+++       ++ +   N  +    +    + +R  G+   + +DG  +
Sbjct: 43  AFKPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDF-DSNRSGGIVAINLRDGDEL 101

Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743
              +     + L  + + G+S   S  D       R   G    + 
Sbjct: 102 VGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRV 147



 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLKIAL 555
                   +Q    E  P  V+ +  G ++  K    D +      A++ ++GD L  A+
Sbjct: 46  PEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDGDELVGAV 105

Query: 556 HAHTTDRILLLSTDGKAYTLPAGN---LLSGRG 585
                D +LL+S +G++    A +      GR 
Sbjct: 106 LCSADDDLLLVSANGQSIRFSATDEALRPMGRA 138


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 78/99 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIG+ HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+ +
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYDGK 100


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 78/100 (78%), Gaps = 1/100 (1%)

Query: 48  DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           DG KPV RRI++AMSE+GL+  A FKKSAR VG+V+GK HPHGD++ Y+++V +AQPF  
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 108 RYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQG 146
           RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL+L  
Sbjct: 62  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 101


>gi|126797748|gb|ABO27393.1| DNA gyrase subunit A [Sinorhizobium kostiense]
 gi|126797750|gb|ABO27394.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDALIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELVAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR++ AM+E+       + KSARIVG+VIGK HPHGDQSVYD+LVRLAQPF  RY L+ G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
           QGNFG+IDGDSAAA RYTEARM+++A  ++  +D++ 
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKET 97


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 69/91 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGDSAAA RYTE RM+++A  
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173
           ++  ++++ VDF D Y+  +  P V P+K P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 74/107 (69%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+  
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
            GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 107


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/70 (65%), Positives = 57/70 (81%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           A+PD+RDG KPVHRRI++AM E+GL     F+K AR+VG+V+GK HPHGDQSVYD+LVR+
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 102 AQPFVQRYPL 111
            Q F  RYPL
Sbjct: 62  VQDFSSRYPL 71


>gi|126797742|gb|ABO27390.1| DNA gyrase subunit A [Sinorhizobium fredii]
          Length = 176

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDSLIRLI-DDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELAAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           ++A  ++  ++++ VDF D Y+  +  P V P+K
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 76/99 (76%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
                +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 4   SYAWRIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 63

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           G+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDT 102


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|89515125|gb|ABD75392.1| DNA gyrase subunit A [Sinorhizobium medicae]
 gi|126797762|gb|ABO27400.1| DNA gyrase subunit A [Sinorhizobium medicae]
          Length = 176

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +    + ++L+E Q  AIL LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDGLIRLI-DDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKIGDE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMQIVKDELTSVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQ 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|126797806|gb|ABO27422.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 176

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E + ++ ++ + +      ++L+E Q  AIL LRL+ L  L   +I  EL+ +  E +  
Sbjct: 34  ESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGDEIKDY 93

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L+S  +    +  E+  V++ F        RRT   E+S        + +I++E + 
Sbjct: 94  LDILSSRARIQQIVKDELAAVRDEFGTP-----RRT---ELSEGGADMEDEDLIQREDMV 145

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK 546
           V +S+ G+I+ +            K
Sbjct: 146 VTVSHSGYIKRVPLSLYRAQRRGGK 170


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 75/94 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 78/99 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D  +++
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNNDDK 100


>gi|89515119|gb|ABD75389.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797752|gb|ABO27395.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797754|gb|ABO27396.1| DNA gyrase subunit A [Sinorhizobium sp. CFN_EC1002]
          Length = 176

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 401 DEIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            ++ ++IR  D P+        ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E 
Sbjct: 31  HDVESLIRLIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEI 90

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +    +L+S  +  + +  E+  +++ F        RR+   E+         + +I +E
Sbjct: 91  KDYLDILSSRLRIMSIVKDELVAIRDEFGTP-----RRS---EIMEGGPDMDDEDLIARE 142

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFK 546
            + V +S+ G+I+ +   +        K
Sbjct: 143 DMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G   D  S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|122939097|gb|ABM69130.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797772|gb|ABO27405.1| DNA gyrase subunit A [Ensifer adhaerens]
          Length = 176

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +    + ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  HDVDSLIRLI-DDPRHRINEDNTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +    +L+S  +    +  E+  + + F        RR+   E++        + +I +
Sbjct: 90  IKDYLDILSSRLRIMTIVKDELTAISQEFGTP-----RRS---EIAEGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI++AMSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYP
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 111 LISGQGNFG-NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           LI GQGN+G   D  S AA RYTEA+++  +EL+L  + +   +++D +
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA
Sbjct: 2   EQAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 61

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160
            RYTE R+ ++A  ++  ++++ VDF DTY+ 
Sbjct: 62  MRYTEIRLAKIAHELMADLEKETVDFVDTYDG 93


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 6   ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
           +    T+++  +  + +   + +  + ++L+    R+IP + DG KP  R++I+A  +  
Sbjct: 616 LYEPGTVLDPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRN 674

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI-- 121
           L       +    V E  G  + HG+ S+Y ++V LAQ F       L+   G FG    
Sbjct: 675 LKSEIKVAQLGGYVSEHTG--YHHGEPSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRAT 732

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            G  +AA RY    + ++   I   +D+  + +     +      
Sbjct: 733 GGKDSAAPRYIFTELNKITRKIFNSLDDPLLTYIQDDEQTVEPEW 777


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILL 106


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 75/103 (72%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           + M  +G+     +  SAR VG+V+GK HPHGD+SVYD +VR+AQP+  RYP + GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           G++DGD  AA RYTEAR+ ++++ IL  +D++  DF++ +++ 
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNFDDS 103


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 75/102 (73%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163
           DGDSAAA RYTE R+ ++A  ++  ++++ V    T++    
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVVSWITFDGNKW 102


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/96 (55%), Positives = 77/96 (80%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAV 152
           NFG+IDGDSAAA RYTE R+ ++A  ++  ++++ V
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/472 (14%), Positives = 149/472 (31%), Gaps = 67/472 (14%)

Query: 55   RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
            RR+     E        +      + + +  +    DQ +   +  + +       +   
Sbjct: 672  RRLHGLPEEYLYGKSTKYLTFNDFINKELMHVDYVADQIIAKLIEVVKKKNKGGIAVKPF 731

Query: 115  QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174
            Q N        A   +Y    +  +A L+   +D+  + F    + +  EP  +    P 
Sbjct: 732  QKNHFFGAYMHARQPQYLCTMVPPLARLLFPAMDDSVLKFMY-DDNQKVEPEWYIPIIPT 790

Query: 175  LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234
            +L NG  GI  G +  IP+++ +EI      L+D  E            P  P+      
Sbjct: 791  VLVNGAEGIGTGWSCKIPNYDTREIVSNIGRLLDGLE----------PLPMLPSYKNFKG 840

Query: 235  SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII--- 291
              + +  +  +  G   V     +E          ++E+P +       E++ E ++   
Sbjct: 841  LIQELGPNQYILNGEVSVLDNTTIE----------ISELPVRTWTQNYKEQVLEPMLNGT 890

Query: 292  AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-- 349
             K  PL+ D ++   +     +         +     +  +  ++T    N  VL     
Sbjct: 891  EKTPPLITDYKEYHTDTTVKFVVKLTEQKLMEAEAAGLHKVFKLQTPLTCNSMVLFDHVG 950

Query: 350  RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             + +      IL+E+   R +    R  + +  +    E  +    A   +++I   I  
Sbjct: 951  CLRKYETATDILREFFVLRLKYYSLRKDWLVGML--TAEASRLSNQARFILEKIEGKIVI 1008

Query: 410  EDKPKPVMVSRFSLTENQVD----------------------------------AILNLR 435
            E+KPK  ++          D                                   +L + 
Sbjct: 1009 ENKPKKELIQMLVQRGYDSDPVKSWKQTQEKEEAGELLEEEEETEVNTAGPDFNYLLGMP 1068

Query: 436  LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            L +L K ++ ++  + D   AE + +     S    W     ++    E   
Sbjct: 1069 LWNLSKEKKDELCKQRDVKNAELQDLKK--KSPSDLW---KEDLSAFVEELD 1115


>gi|89515117|gb|ABD75388.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + +      ++L+E Q  AIL+LRL+ L  L   +I  EL+ +  E
Sbjct: 31  RDVDALIRLI-DDPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RRT   E++        + +I +
Sbjct: 90  IRDYLEILSSRLRIMQIVKDELVAVRDEFGTP-----RRT---EIADGGPDMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 75/95 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNILL 106


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 76/95 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/99 (53%), Positives = 75/99 (75%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GDSAAA RYT  R+ ++A  ++  ++++ V F D Y ++
Sbjct: 62  GDSAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYEDK 100


>gi|126797802|gb|ABO27420.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
            + L+    N  ++ ++IR  D P+        ++L+E Q  AIL LRL  L  L   +I
Sbjct: 20  REELMTRRWNAADVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEI 79

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
             EL+ + AE +    +L+S  +    +  E+  V++ F        RRT   E+     
Sbjct: 80  DEELNQIGAEIKDYLDILSSRARIQTIVKEELSAVRDEFGTP-----RRT---EIVDGGL 131

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
               + +I +E + V +S+ G+I+ +   +        K
Sbjct: 132 EMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AA RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDN 91


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 683 EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 740

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
             +A RY    + ++   I   +D+   ++     +      
Sbjct: 741 DFSAARYIFTELNEITRKIFNPLDDPLYNYVQDDEQTVEPEW 782


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DGFKP  R++++   +  L  
Sbjct: 624 PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 682

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 683 EIKVAQLAGYVSENTG--YHHGEQSLVPTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGK 740

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
             +A RY    ++++   I   +D+    +     +      
Sbjct: 741 DFSAARYIFTELSEITRKIFNPLDDPLYTYVQDDEQTVEPEW 782


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 1/94 (1%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
            + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQP
Sbjct: 1   SIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQP 60

Query: 105 FVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMT 137
           F  RYP + GQGN+G   D  S AA RYTEAR++
Sbjct: 61  FSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLS 94


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 76/95 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DGDSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 78/97 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           IDGDSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 97


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 76/94 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           DSAAA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 96


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 87/286 (30%), Gaps = 64/286 (22%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ +     + +  + ++++    R+IP +  G KP  R++I    +  L  
Sbjct: 692 PGTFLDHRLEEIPYSEFINKELILFSMANNV-RSIPSIAYGLKPGQRKVIWGCFKRKLKK 750

Query: 69  GAAFKKSARIVGEVIGKL--HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  AR     I +   + HG+ S+  +++ LAQ FV    L        ++D D  
Sbjct: 751 EIKVEIFARSSNGYISEHAAYHHGEASLAATIINLAQDFVGSNNLAL---LSPSLDDDVP 807

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
                                                         P +L NG  GI  G
Sbjct: 808 IEPE------------------------------------WHMPTVPMVLINGAEGIGTG 831

Query: 187 MA--TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244
               T+IP +N  +I       +       E+L           G +    +        
Sbjct: 832 SRLDTNIPPYNPIDIVANIRRKMKG-----EELEPMTPWWRGFKGEVRPPGK-------- 878

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
              G + V               + ++E+P         + +  +I
Sbjct: 879 ---GKYDVVGVAT----KINDTTVEISELPIHKWTRTFKDDLEVMI 917


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 74/97 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V GK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GDSAAA RYTE R+ ++A  ++  + ++ VDF   Y+
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYD 98


>gi|317498959|ref|ZP_07957242.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893792|gb|EFV15991.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 524 ISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583
           +   G+ +++   +   +  +  +    K  +    TD+I + +  G  + +   ++ +G
Sbjct: 1   MDRFGYSKTMDKATYQRNKENILKE--YKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAG 58

Query: 584 --RGHGEAIQLLIDLNH-NQDIVTAFVYDST--CKLLVVSSKGNAFIVEESEIIANTRKG 638
             R  G  I  L + +   + I+     +S     LL  ++K    +++  E++   ++ 
Sbjct: 59  KFRDKGVPIDNLCNYDSTKEYIIQVLDAESMIHSSLLFATAKSMLKVMD-GELLNAAKRT 117

Query: 639 KTFLKVSSEEKMKLVVKVT-----GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY 692
               K+S  +++  V+ +       D V +  +    L F + +IP+  +   GVR    
Sbjct: 118 VQATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEIPKKKKSALGVRGMKL 176

Query: 693 -KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG---WLGKRGGVGSLVPK 742
            KD  ++++         + +          E +L      L KR   G+ V +
Sbjct: 177 SKDDSLTNIYVMAAQNISSIVY--------KEKELEFHRLKLSKRDSKGTKVRR 222


>gi|126797794|gb|ABO27416.1| DNA gyrase subunit A [Rhizobium huautlense]
          Length = 176

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 402 EIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++ A+IR  D P+        ++L+E Q  AIL LRL  L  L   +I  EL+ + AE  
Sbjct: 32  DVEALIRLIDDPRHRINDDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIS 91

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L+S  +    +  E+ EV++ F        RRT   E+         + +I +E 
Sbjct: 92  DYLDILSSRLRIQQIVKDEMAEVRDEFGTP-----RRT---EIMEGGPDMDDEDLIARED 143

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFK 546
           + V +S+ G+I+ +   +        K
Sbjct: 144 MVVTVSHLGYIKRVALGTYRAQRRGGK 170


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 74/106 (69%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 106


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + +++S    R+IP + DG KP  R++++   +  L  
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                + A  V E  G  + HG+QS+  +++ LAQ F       ++   G+FG+    G 
Sbjct: 683 EIKVAQLAGYVSENTG--YHHGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 740

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
             +A RY    + ++   I   +D+   ++     +      
Sbjct: 741 DFSAARYIFTELNEITRKIFNPLDDPLYNYVQDDEQTVEPEW 782


>gi|530409|emb|CAA83715.1| DNA gyrase (A) [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 200

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPE 680
                + SE     R GK  + +   +++  V   TG D + +  E+ K++      +  
Sbjct: 1   MIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNP 60

Query: 681 MSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737
            SR G GVR    +  D  +  +  FK+         + +   +        +  R G G
Sbjct: 61  QSRVGSGVRALKLETNDVVVGAISSFKLTH---ITTVSNKGLFKKTPIDDYRISGRNGKG 117

Query: 738 SLVPKGFPRSGKF 750
             V     R+GKF
Sbjct: 118 IKVMNLNQRTGKF 130



 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           I+L  N  +V+ F       + + +  G    ++ES +   +R G     +  E    +V
Sbjct: 21  INLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVV 80

Query: 654 VKVTG---DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY--KDGGISDVICFKICE 707
             ++     H+  V          ID      R GKG+++ +   + G    +I  +  +
Sbjct: 81  GAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETD 140

Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742
            +  I S G       +++      R   G    +
Sbjct: 141 LILIISSDGNLIKTKVSNIPSL--SRNASGVKAIR 173



 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 2/179 (1%)

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535
             +I E + I          R     VS           I  E   V+      +     
Sbjct: 4   RTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNPQSR 63

Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595
               + AL  +  D +  A+ +     I  +S  G     P  +      +G+ I+++  
Sbjct: 64  VGSGVRALKLETNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNL 123

Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKL 652
                          T  +L++SS GN    + S I + +R   G   ++++  +++  
Sbjct: 124 NQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADXQEINA 182


>gi|126797804|gb|ABO27421.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 176

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
           E + ++ ++ + +      ++L+E Q  AIL LRL+ L  L   +I  EL+ + AE    
Sbjct: 34  ESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIVDY 93

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             +L+S  +    +  E+  V++ F        RRT   E++        + +I++E + 
Sbjct: 94  LDILSSRARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMV 145

Query: 522 VVISNRGWIRSLKSHSVDLSALHFK 546
           V +S+ G+I+ +            K
Sbjct: 146 VTVSHSGYIKRVPLSLYRAQRRGGK 170


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 59/87 (67%)

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +Y +LVRLAQ +  RYPL+ GQGNFG+   D  AA RYTE RMT +A  +++ + E+ VD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGT 180
           F   Y+ +  EP + PS+ PNLL NG+
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGS 87


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ + +   + +  + ++++    R++P + DG KP  R++I+ + +   + 
Sbjct: 614 PGTQLDPEIEEIPIADFINKELILFSMADNI-RSLPCVLDGLKPAQRKVIYGLQKRAGNR 672

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDGD 124
                  A  +       + HGDQS+  ++V +AQ F       L+  +GNFG+  + G 
Sbjct: 673 EGKVNDLAGYISSNTA--YHHGDQSLVMTIVSMAQDFVGANNINLLEPRGNFGSRFMGGK 730

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            A+A RY    ++++ + +   +D     +            
Sbjct: 731 DASAARYIHTCLSEITKSVYNPLDNSLYKYVQEDESTVEPQW 772


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDFV 93


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score = 97.9 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           A RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R+++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRY 131
           KKSAR VG+V+GK HPH D + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177
           TE+R ++ AEL+L  + +  VD+   ++    EP + P++ PN+L 
Sbjct: 61  TESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNILL 106


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 74/104 (71%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM+ +G D+  A KK+AR+VG+VIG  HPHGD + YD++VR+AQPF  R+ L+ GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           FG+IDGD AAA R+TE R+  +A  +   ++ + VDF D Y+  
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYDGT 104


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           AA RYTE R+ ++A  ++  ++++ VDF DT
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDT 91


>gi|126797796|gb|ABO27417.1| DNA gyrase subunit A [Rhizobium galegae]
          Length = 176

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ++D +I +I ++ + K      ++L+E Q  AIL LRL  L  L   +I  EL+ + AE
Sbjct: 31  QDVDALIRLI-DDPRHKINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAE 89

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                 +L+S  +    +  E+  V++ F        RR+   +          + +I +
Sbjct: 90  ISDYLDILSSRLRIQTIVKDELAAVRDEFGTP-----RRSQILDA---GLEMDDEDLIAR 141

Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK 546
           E + V +S+ G+I+ +   +        K
Sbjct: 142 EDMVVTVSHLGYIKRVTLGTYRAQRRGGK 170


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 45  DLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQP 104
            + DG KPV RRI++AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQP
Sbjct: 14  HIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQP 73

Query: 105 FVQRYPLISGQGNFGN-IDGDSAAAYRYTEARM 136
           F  RYP + GQGN+G+  D  S AA RYTEAR+
Sbjct: 74  FSFRYPFVDGQGNWGSADDPKSFAAMRYTEARL 106


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 75/93 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           DSAAA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 72/90 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDT 157
           A RYTE R+ ++A  ++  ++++ VDF D 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 406 IIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
           +I+  D P+        ++L+E Q  AIL+LRL+ L  L   +I  EL+ + AE      
Sbjct: 36  LIKLIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIVDFLD 95

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
           +L+S  +    +  E+  V++ F        RRT   E+S        + +I++E + V 
Sbjct: 96  ILSSRARIQQIVKDELIAVRDEFGTP-----RRT---ELSEGGADMEDEDLIQREDMVVT 147

Query: 524 ISNRGWIRSLKSHSVDLSALHFK 546
           +S+ G+I+ +            K
Sbjct: 148 VSHSGYIKRVPLSLYRAQRRGGK 170


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 52  PVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPL 111
           PVHRR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP 
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 112 ISGQGNFGNIDGDSAAAYRYTEA 134
           + GQGNFG++DGD  AA RYTEA
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTEA 83


>gi|126797800|gb|ABO27419.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 402 EIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++ ++I+  D P+        ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +
Sbjct: 32  DVESLIQLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIDEELNQIGVEIK 91

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L+S  +    +  E+  V++ F        RRT   E+         + +I +E 
Sbjct: 92  DYLDILSSRVRIQTIVKEELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIARED 143

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFK 546
           + V +S+ G+I+ +   +        K
Sbjct: 144 MVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|167949304|ref|ZP_02536378.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 105

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 66/89 (74%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           + RR  +R+  +  R+ +L+GL+IAYLNIDE+IAIIR ED PK  ++ RF+L+E Q +AI
Sbjct: 1   MTRRLQYRLDQVLDRLHLLEGLMIAYLNIDEVIAIIRYEDDPKAELMRRFALSERQAEAI 60

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           LNLRLR L KLEE++I+ E D L  E++ 
Sbjct: 61  LNLRLRHLAKLEEFKIRGEQDELEQERDW 89


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|325271255|ref|ZP_08137799.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103615|gb|EGC00918.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 115

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++          ++  ++D+    I +G T 
Sbjct: 12  DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IADGATL 69

Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
           +  AG R+ +   +DL  + G+RG  GS +P+GF R    
Sbjct: 70  VLQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQRVDSL 109


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|126797798|gb|ABO27418.1| DNA gyrase subunit A [Rhizobium tropici]
          Length = 176

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 402 EIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++ ++IR  D P+        ++L+E Q  AIL LRL  L  L   +I  EL+ + AE +
Sbjct: 32  DVESLIRLIDDPRHRINDDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIK 91

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L+S  +    +  E+  V++ F        RRT   E+         + +I +E 
Sbjct: 92  DYLDILSSRVRIQTIVKEELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIARED 143

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFK 546
           + V +S+ G+I+ +   +        K
Sbjct: 144 MVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  + ++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 93


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|122939091|gb|ABM69127.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|126797790|gb|ABO27414.1| DNA gyrase subunit A [Rhizobium indigoferae]
          Length = 176

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 402 EIIAIIRNEDKPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++ ++IR  D P+  +     ++L+E Q  AIL LRL  L  L   +I  EL+ +  E +
Sbjct: 32  DVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIK 91

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L+S  +    +  E+  V++ F        RRT   E+         + +I +E 
Sbjct: 92  DYLDILSSRVRIQTIVKDELLAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIARED 143

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFK 546
           + V +S+ G+I+ +   +        K
Sbjct: 144 MVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|227553417|ref|ZP_03983466.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227177450|gb|EEI58422.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 261

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 15/191 (7%)

Query: 572 AYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFVYDS---TCKLLVVSSKGNAFI 625
               P   L   R    GE I Q +++L  ++ I+  + Y     T   + ++  G    
Sbjct: 1   MIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQ 60

Query: 626 VEESEIIA-NTRKGK--TFLKVSSE-EKMKLVVKVTGDH---VAVVGENRKLLIFSIDQI 678
            + ++     T K +  + +K+ S+ +++  V          V +V      L + + ++
Sbjct: 61  TKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV 120

Query: 679 PEMS-RGKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLGKRGGV 736
           P +  +  GV+  + K+            EG T  +    R   +           R   
Sbjct: 121 PVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKR 180

Query: 737 GSLVPKGFPRS 747
           G +V +   ++
Sbjct: 181 GLMVLRELKKN 191



 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 17/193 (8%)

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI--TVVISNRGWIRSLKSHSV----- 538
           F        R T+  ++           +   + +    ++SNRG+      + V     
Sbjct: 66  FEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS 125

Query: 539 ---DLSALHFKEGDSLK--IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593
               + +++ KE D +   + +H+     I++++  G    + A  L         + +L
Sbjct: 126 KAAGVKSMNLKEDDYVVNGLLVHSEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMVL 185

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGN--AFIVEESEIIANTRKGKTFLKVSSEEKMK 651
            +L  N   V      +   LLV + KG       +   I   T  G   +    E+K  
Sbjct: 186 RELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVI---DEQKDG 242

Query: 652 LVVKVTGDHVAVV 664
            V++V   H AV+
Sbjct: 243 QVMEVHEMHSAVI 255


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 73/104 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/99 (52%), Positives = 76/99 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V G+ HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 3   RIGHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
           GDSAAA RYTE R+ ++A  ++  ++++ VDF D  +++
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKNDDK 101


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+ G+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/104 (41%), Positives = 73/104 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           GN G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/94 (56%), Positives = 72/94 (76%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+V GK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           GDSAAA RYTE R+ ++A  ++  + ++ VDF D
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFVD 95


>gi|1333777|emb|CAA43745.1| unnamed protein product [Mycoplasma genitalium]
          Length = 131

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 12/126 (9%)

Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569
           E + + +S  G+++              V +  L     DS+   L   T   +L  +  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDK 65

Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFI 625
           GK Y + A  +  G     G     LI +  ++ I +    +          +  G    
Sbjct: 66  GKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKR 125

Query: 626 VEESEI 631
              +E 
Sbjct: 126 TSLNEF 131



 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 19/136 (13%)

Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHG-EAIQLLIDLNHNQDIVTAFVYD 609
           ++  +   +T+  L      K   + A NL    G G + +   +    +  I    V  
Sbjct: 5   VENVVITMSTNGYL------KRIGVDAYNLQHRGGVGVKGLTTYV----DDSISQLLVCS 54

Query: 610 STCKLLVVSSKGNAFIVEESEII--ANTRKGKTF---LKVSSEEK---MKLVVKVTGDHV 661
           +   LL  + KG  + +   +I     T KG      +K+  +E+   +  V      + 
Sbjct: 55  THSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYF 114

Query: 662 AVVGENRKLLIFSIDQ 677
               +N  +   S+++
Sbjct: 115 FFCTKNGIVKRTSLNE 130


>gi|38305350|gb|AAR16193.1| antigen MLAA-44 [Homo sapiens]
          Length = 373

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 114/374 (30%), Gaps = 70/374 (18%)

Query: 158 YNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL 217
            + +  EP  +    P +L NG  GI  G A  +P+++ +EI      +++  +      
Sbjct: 10  DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD------ 63

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
                 P  P       + + + ++     G   V               + +TE+P + 
Sbjct: 64  ----PHPMLPNYKNFKGTIQELGQNQYAVSGEIFVV----------DRNTVEITELPVRT 109

Query: 278 QKSRLIEKIAELIIAKRIPL---LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
                 E++ E ++         + D ++   +     +               +  +  
Sbjct: 110 WTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFK 169

Query: 335 METRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           ++T    N  VL      + +   +  ILKE+   R      R  + +  +    E  K 
Sbjct: 170 LQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGML--GAESTKL 227

Query: 393 LLIAYLNIDEIIAIIRNEDKPKP-----------------------VMVSRFSLTENQVD 429
              A   +++I   I  E++ K                           +    ++NQ D
Sbjct: 228 NNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHD 287

Query: 430 ---------------AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                           ILN+ L SL K +  ++  + D    E   +     S    W  
Sbjct: 288 DSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW-- 343

Query: 475 IACEIREVKEIFSK 488
              ++    E   K
Sbjct: 344 -KEDLAAFVEELDK 356


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           RYTEARM+++A  +L+ ++++ VDF D Y+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYD 90


>gi|313103856|pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103857|pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103858|pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
          Length = 276

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGN 622
            L+S  G+ Y +     L G         +   +  + IV AF+ +    +LL+ + KG 
Sbjct: 39  FLVSNRGRVYWIAGSQALQG-------SKVSLKSREEKIVGAFIREKFGNRLLLATKKGY 91

Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVTGDHVAVVGENRKLLIFSIDQIPE- 680
              +  +E      +G   +K++  +++  +   V   H+ +  +  ++  FS+ ++P  
Sbjct: 92  VKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPS 150

Query: 681 MSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
               +GV+     K+   S +  +     L  I + GR    S  ++      RG  G+
Sbjct: 151 TPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI--PKTNRGVKGT 207



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 525 SNRGWIRSLKSHSVDLSALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
           + +G+++ +     +  A         EGD +     +     ILL +  G+        
Sbjct: 87  TKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           +         +Q  I L  N +     +++    LLV+++KG    +   EI    R  K
Sbjct: 147 VPPSTPGARGVQG-IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVK 205

Query: 640 TFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670
                 +++ +  ++ +  +  + +  +N K 
Sbjct: 206 GTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 237


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 70/89 (78%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQG 146
           FG++DGDSAAA RYTE RM ++A  +L  
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLAD 89


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               ++  +  + +   + +  + +++S    R+IP + DG KP  R+++    +  L  
Sbjct: 621 PGNQLDPELNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                + A  V E  G  + HG+ S+  +++ LAQ F       ++   G FG+    G 
Sbjct: 680 EIKVAQLAAYVSENTG--YHHGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATGGK 737

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            AAA RY    +  + + I   +D     +     +      
Sbjct: 738 DAAAARYIFTELNDITKAIFNPLDNPIYSYVQDDEQTVEPQW 779


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 72/89 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRD 156
           A RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 67/89 (75%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           VIGK HPHGDQ VY ++VR+AQ F  RY L+ G GNFG+IDGDSAAA RYTEAR+++++ 
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
            +L+ +D++ VDF   Y+  + EP V PS
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVLPS 101


>gi|308235539|ref|ZP_07666276.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 245

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 16/168 (9%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-------EKMKL 652
           Q +++   YD    L++ +  G        E  +  + G   +++ +        +++  
Sbjct: 2   QAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELIG 61

Query: 653 VVKVT-GDHVAVVGENRKLLIFSIDQ--IPEMSR-GKGVRLQSYKDGG---ISDVICFKI 705
                  D + +V +    L F  D   +  M R   GV+   +++       DV+  + 
Sbjct: 62  AALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDELLDMDVVSVET 121

Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + L  + + G  + +        L  R G G    +     G  + +
Sbjct: 122 SKDLLVVTNEG--FAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGA 167



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGN---LLSGRGHGEAIQLLIDLNHNQDI-VT 604
           D L  A   ++ D I+L+S  G +    A +      GR     +Q +     ++ + + 
Sbjct: 57  DELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA-GVQGMRFREDDELLDMD 115

Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDH 660
               +++  LLVV+++G A      E     R G     V   E     +  ++    D 
Sbjct: 116 VVSVETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQ 175

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           V  + ++ K++   ++++    R   GV L     G   ++I     E
Sbjct: 176 VMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKG--DEIISIARNE 221


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 73/90 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRD 156
           AA RYTE R+ ++A  ++  ++++ VDF D
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFVD 90


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 73/92 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  + ++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 92


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ +
Sbjct: 1   VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 60

Query: 139 VAELILQGVDEDAVDFRDTYNEE 161
           +A  ++  ++++ VDF D Y+  
Sbjct: 61  IAHELMADLEKETVDFVDNYDGT 83


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RRII++MSE+GL+  +  KKSAR VG+VIGK HPHGD + Y++LV +AQPF
Sbjct: 1   IGDGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPF 60

Query: 106 VQRYPLISGQGNFG-NIDGDSAAAYRYTEAR 135
             RYPLI GQGNFG + D  S AA RYTE+R
Sbjct: 61  SYRYPLIEGQGNFGSSDDPKSFAAMRYTESR 91


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 71/88 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFR 155
           A RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           RYTEARM+++A  +L+ ++++ VDF D Y+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYD 90


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           RYTEARM+++A  +L+ ++++ VDF D Y+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYD 90


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 72/104 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
            G++DGD  AA RYTEAR++++A  +LQ +++  V F   +++ 
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 104


>gi|126797792|gb|ABO27415.1| DNA gyrase subunit A [Rhizobium gallicum]
          Length = 176

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 401 DEIIAIIRNEDKPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +++ ++IR  D P+  +     ++L+E Q  AIL LRL  L  L   +I  EL+ +  E 
Sbjct: 31  EDVESLIRLIDDPRHRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGDEI 90

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +    +L+S  +    +  E+  V++ F        RRT   E+         + +I +E
Sbjct: 91  KDYLDILSSRVRIQTIVKDELTSVRDEFGTP-----RRT---EIVDGGLEMDDEDLIARE 142

Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFK 546
            + V +S+ G+I+ +   +        K
Sbjct: 143 DMVVTVSHLGYIKRVPLTTYRAQRRGGK 170


>gi|321472296|gb|EFX83266.1| hypothetical protein DAPPUDRAFT_315718 [Daphnia pulex]
          Length = 711

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 80/484 (16%), Positives = 158/484 (32%), Gaps = 59/484 (12%)

Query: 11  TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70
            L     + VS    +    + Y      ER    + DG     R+II    +       
Sbjct: 228 HLYRRETRHVSFYEFVHRGLVHYTNME-HERYTRSIMDGLTVGQRKIIFTCIKRTDKEEV 286

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV--QRYPLISGQGNFGNI--DGDSA 126
              + A +V       + + ++++  +++ LA  FV      L+   G+FG     G+ A
Sbjct: 287 TVAQLAGLVAARTSLCN-YDEENLTRTIIGLAHDFVGTNNINLLQPIGHFGTRLQGGEDA 345

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186
           A+ R     M+Q+  +I    D+  +  R T  +   EP  +    P +L NG  GI   
Sbjct: 346 ASPRQISTLMSQLTRIIFHPHDDWLLKHR-TDGKRLIEPEFYAPIIPMILVNGIGGIGTD 404

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
             TS   +N ++I E  + +++  E          + P                  Y+  
Sbjct: 405 WTTSRLIYNPRDIIENIMRMLNGEE-------PIYMNPWIKG--------------YQGS 443

Query: 247 RGGFRVRARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAE--LIIAKRI-PLLEDIR 302
                        EV +  +  +V+TE+P  +      E + E  L  +++I PL+   +
Sbjct: 444 IQRVDDNTYVISGEVSKLSATQVVITELPLGISVRNYRESVMENLLHGSEKIPPLITGYK 503

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLDGI 360
           +   +     +             +    L  ++    +   +L      +      + I
Sbjct: 504 EYHTDTTVRFVVNMTEEKMQQAESQGFHDLFRLQCTHTVTPTLLYDPNGFLKNYDSNNDI 563

Query: 361 LKEWLAHRREVLFRRSSF---RMQAIDRRVEILKGLLIAYLNID------------EIIA 405
           LK +   R  +   R       +QA  +++      + A  N D            E + 
Sbjct: 564 LKTYFDVRLNLFEERKKLLTGELQASCKKLTNEIRYVHAIWNGDLIVNRKKINVLVEELR 623

Query: 406 IIRNEDKP--------KPVMVSRFSLTENQVDAILNLRLRSLR--KLEEYQIKSELDNLL 455
            +  +  P           + +   + ++    +L +  RSL    L E     +     
Sbjct: 624 RLNFDPDPLRARMKNQNDNVKTEDEVGDDDFSYLLMMNTRSLTLEGLNELLQNQKFKMKA 683

Query: 456 AEKE 459
            E  
Sbjct: 684 LEIA 687


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           D+SVYD++VR+AQ +  RY L+ GQGNFG++DGDS AA RYTEARM +++E I+  ++++
Sbjct: 1   DRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKE 60

Query: 151 AVDFRDTYNEEDSEPVVFPSKFPNLLANG 179
            VDF+  +++   EP V P+K P LL NG
Sbjct: 61  TVDFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 58/82 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KP  RRI++AM  + L  G   +K A+I G+  G  HPHG+Q +Y +LVR+AQP++ RY 
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 111 LISGQGNFGNIDGDSAAAYRYT 132
           L+ GQGNFG++DGD  AA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
               ++  +  + +   + +  + +++S    R+IP + DG KP  R+++    +  L  
Sbjct: 621 PGNQLDPALNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                + A  V E  G  + HG+ S+  +++ LAQ F       ++   G FG+    G 
Sbjct: 680 EIKVAQLAAYVSENTG--YHHGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATGGK 737

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            AAA RY    +  + + I   +D     +     +      
Sbjct: 738 DAAAARYIFTELNDITKAIFNPLDNPIYTYVQDDEQTVEPQW 779


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFR 155
           AA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 67/93 (72%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           G    K+  +   VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA
Sbjct: 7   GTKPIKNLPVSLVVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 66

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161
            RYTE R+ ++A  ++  ++++ VDF D Y+ +
Sbjct: 67  MRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 99


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           DSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFR 155
           AA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
          ++N++ V L+ ALE+RYLAYALSTI  RA+PD+RDG KPVHRRI++AM+EMGL   +AFK
Sbjct: 8  DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFK 67

Query: 74 KSARIVGEVIG 84
          K A+IVGEV+G
Sbjct: 68 KCAKIVGEVMG 78


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 71/88 (80%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFR 155
           A RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + AM+ +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VRLAQPF  RY L+ GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQG 146
           FG++DGDSAAA RYTE RM ++A  +L  
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLAD 89


>gi|296391804|ref|ZP_06881279.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 108

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTW 711
           D +A V    +LL+F +  +P++ +GKG ++          ++  ++D+        L  
Sbjct: 3   DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL-V 61

Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + +  R+ +   +DL  + G+RG  G+ +P+GF R    L
Sbjct: 62  LQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 101


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L+    +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 1   LNATEKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
           S AA RYTE+R+++++E++L  +++  VD++  ++   +EP   P+
Sbjct: 61  SFAAMRYTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|317498960|ref|ZP_07957243.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893793|gb|EFV15992.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 194

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
              +  +   P+ + L GI++       EV  R+    +  +  + EI +GL+ A   ID
Sbjct: 1   MNMLAIVDGRPETLDLKGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMID 60

Query: 402 EIIAIIRNEDKPKPVMVS---------------------RFSLTENQVDAILNLRLRSLR 440
            II IIR     K V                        + S T+ Q  AIL+L+L  L 
Sbjct: 61  LIIEIIRGSKSQKEVKACLTKGDVGNINFKSSDSMIEATKLSFTDKQASAILDLKLYRLI 120

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            LE   +K E + +LA+ E+ + +LN+ K   N I  E+ ++K+      +L
Sbjct: 121 GLEILMLKEEYEEILAKIEEYEDVLNNEKSLKNVIRKELDKIKKNLDAKEEL 172


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ L    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG++DGDSAAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score = 93.7 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 74/93 (79%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122
            +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+ID
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           GDSAAA RYTE R+ ++A  ++  ++++ VDF 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 94


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/106 (39%), Positives = 71/106 (66%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
              F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD
Sbjct: 1   KHTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPS 170
             AA RYTEAR++++A  +LQ ++++ V F   +++ + EP   P+
Sbjct: 61  PPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 76/102 (74%), Gaps = 3/102 (2%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDA--VDFRDTYNE 160
           IDGDSAAA RYTE R+ ++A  ++  ++++   + +   Y+ 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKERRWISWIP-YDG 101


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 68/90 (75%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AA  
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQ 60

Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           RYTEARM+++A  +L+ ++++ VDF   Y+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVANYD 90


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 64/74 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDGD 124
           L+ GQGNFG+IDGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  ++ + +   + +  + ++++    R+IP + DGFKP  R++++   +  L  
Sbjct: 624 PGTHLDPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRS 682

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                +    + E  G  + HG+ S+  ++V LAQ F       L+   G FG+    G 
Sbjct: 683 EIKVAQLVGYISEHTG--YHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGK 740

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
             +A RY    +T +  +I   +D+D   +    
Sbjct: 741 DFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQDD 774


>gi|254507465|ref|ZP_05119599.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
 gi|219549535|gb|EED26526.1| DNA topoisomerase 4 subunit A [Vibrio parahaemolyticus 16]
          Length = 123

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFK 704
            +  +  D +  +    ++L+F I  +P++++GKG ++ +        ++  +S +I   
Sbjct: 5   AIADLDSDEIVAITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEILSHLIAVP 64

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               LT + +  R      +DL  + G+RG  GSL+P+G  R  + 
Sbjct: 65  RGATLT-LYAGKRKLGLKPSDLDNFRGERGRRGSLLPRGLQRVTRI 109


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 71/102 (69%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           +++M++ G  F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
            G++DGD  AA RYTEAR++++A  +LQ +++  V F   ++
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 102


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/93 (55%), Positives = 73/93 (78%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
             AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGN
Sbjct: 2   FTAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGN 61

Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150
           FG+IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 62  FGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 94


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
           N N  ++ +V+ VS R  +++  + ++++   ER+IP   DGFKP  R+I+ +  +  L 
Sbjct: 218 NVNESMDYSVRQVSYRDFVDKELILFSIADC-ERSIPSAIDGFKPGQRKILFSCFKRNLV 276

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGN--IDG 123
                 + A  V E     + HG+QS+  ++V +AQ F      PL+   G FG     G
Sbjct: 277 NSIKVVQLAGYVSE--HSAYHHGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGG 334

Query: 124 DSAAAYRYTEA 134
              AA RY   
Sbjct: 335 KDHAAPRYIFT 345


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 1/95 (1%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           + DG KPV RR+++AMSE+GL     FK+SAR VG+V+GK HPHGD + Y+++V LAQPF
Sbjct: 6   IGDGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPF 65

Query: 106 VQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQV 139
             R PL+ GQG +G   D  S AA RYTE R++  
Sbjct: 66  SYRGPLVDGQGFWGALDDPKSFAAMRYTEYRLSNF 100


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 68/87 (78%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           A + +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   ATNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQG 146
           +IDGDSAAA RYTE R+ ++A  ++  
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMAD 87


>gi|312207859|pdb|3KUA|A Chain A, Ccdbvfi:gyra14vfi
 gi|312207860|pdb|3KUA|B Chain B, Ccdbvfi:gyra14vfi
          Length = 153

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 37/137 (27%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           R   + RR+ F ++    R  IL+GL +A  NIDEII +I+N   P              
Sbjct: 17  RGSHMTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDL 76

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                        ++ LTE Q  AIL LRL  L  LE  +I  E
Sbjct: 77  GNVASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDE 136

Query: 451 LDNLLAEKEKIDSLLNS 467
              LL E  ++  +L S
Sbjct: 137 YKALLDEIAELMHILAS 153


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73
           + +  ++L   +   +L YA+S I  RA+PD+RDG KPVHRRI++AM+++G+    A+K
Sbjct: 6  NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYK 65

Query: 74 KSARIVGEVI 83
          KSARIVGEVI
Sbjct: 66 KSARIVGEVI 75


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 9   SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
             T ++  +  + +   + +  + ++++    R+I  + DGFKPV R+I++A  +  L  
Sbjct: 646 PGTYLDSTLSDIPISEFINKELILFSMADNV-RSIASVMDGFKPVQRKILYACYKRNLRD 704

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGD 124
                +    + E  G  + HGD S+  S++ LAQ F       L+   G FG+    G 
Sbjct: 705 EIKVSQLEGYIAEHTG--YHHGDASLMQSIIGLAQDFVGSNNINLLVPHGGFGSRAAGGK 762

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
            AAA RY    ++ +   I   +D   + +     +      
Sbjct: 763 DAAAARYIFTELSAITRKIFNPLDNPLLTYVQDDEQTVEPEW 804


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 68/85 (80%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYN 159
           RM+++A  +L+ ++++ VDF D Y+
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYD 85


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNIDG 123
           L+ GQGNFG+IDG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 83/98 (84%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++  +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 71/87 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDEDAVD 153
           AA RYTE R+ ++A  ++  ++++ VD
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVD 87


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 68/85 (80%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYN 159
           RM+++A  IL+ ++++ VDF D Y+
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYD 85


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM ++ ++   A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           NFG+IDGD+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|156394521|ref|XP_001636874.1| predicted protein [Nematostella vectensis]
 gi|156223981|gb|EDO44811.1| predicted protein [Nematostella vectensis]
          Length = 394

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 133/399 (33%), Gaps = 73/399 (18%)

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194
            ++ V++++    DE  + F    + +  EP  +    P +L NG  GI  G +T +P++
Sbjct: 1   MLSTVSKMLFPPSDEPNLKFL-NEDNQRIEPEWYCPIIPTILVNGAEGIGTGYSTKVPNY 59

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
           + + I E    +++      E+  E +       G I                   +   
Sbjct: 60  DPRAIAENIRKMMNG-----EEPEEMLPWYKNFIGTI-------------TKVDDTKYSV 101

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDVRI 311
              +E +      + +TE+P         E + E ++    K  P + D ++   E    
Sbjct: 102 TGNIEVIDD--TTLEITELPIGTWTQSYKESVLEPMLHGTDKVPPCITDYKEYHTETRVR 159

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRR 369
            +     +   +     +     +E     +  VL  +MG + +      ILKE+   R 
Sbjct: 160 FVITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLKKYDTTREILKEFFTLRM 219

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------------- 414
           E    R ++    +    E  K    A   +++I   I  E+KPK               
Sbjct: 220 ERYIMRKAYMEGML--TAESGKLNSQARFILEKIEGTIVIENKPKRDLITMLVQRGYPSD 277

Query: 415 --PVMVSRFSLT----------------------ENQVDAILNLRLRSLRKLEEYQIKSE 450
                      T                          + +LN+ + SL + ++ ++  +
Sbjct: 278 PVKAWKDSQDTTLGVDDSDDDTMSTVSSTASGAGGPDFNYLLNMSMWSLSQEKKDELLKQ 337

Query: 451 LDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEI 485
            D   AE E +     S K  WN        E+  V++I
Sbjct: 338 RDQKAAELEDLRK--KSPKDLWNEDLDIFLAELEAVEQI 374


>gi|18104622|gb|AAL59622.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           L+    ++  +L + ++    I  E+ E+KE F+  
Sbjct: 61  LIKLIAELKEILANEEKVLEIIREELTEIKERFNDE 96


>gi|4768994|gb|AAD29710.1|AF140497_1 hypothetical protein [Oryza sativa]
          Length = 142

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649
           L+ L+  + I +      +     L++++  G    V  +   A    G   ++++  ++
Sbjct: 2   LLSLSDGERITSIVPVNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDE 61

Query: 650 MKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705
           +K V +   D  VA+  +N  +++ + +++  + R  +GV     K+G    +    I
Sbjct: 62  LKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG--DKMASMDI 117


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 71/92 (77%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y ++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|312207855|pdb|3KU8|A Chain A, Ccdbvfi:gyra14ec
 gi|312207856|pdb|3KU8|B Chain B, Ccdbvfi:gyra14ec
          Length = 156

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 37/140 (26%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416
           R   + RR+ F ++    R  IL+ L +A  NID II +IR+   P              
Sbjct: 17  RGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 76

Query: 417 --------------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                                         + LTE Q  AIL+LRL+ L  LE  ++  E
Sbjct: 77  GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 136

Query: 451 LDNLLAEKEKIDSLLNSGKQ 470
              LL +  ++  +L S  +
Sbjct: 137 YKELLDQIAELLRILGSADR 156


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|18104624|gb|AAL59623.1| GyrA [Bacillus subtilis]
 gi|18104626|gb|AAL59624.1| GyrA [Bacillus subtilis]
 gi|18104630|gb|AAL59626.1| GyrA [Bacillus subtilis]
 gi|18104632|gb|AAL59627.1| GyrA [Bacillus subtilis]
 gi|18104638|gb|AAL59630.1| GyrA [Bacillus subtilis]
 gi|18104640|gb|AAL59631.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           L+    ++  +L +  +    I  E+ E+KE F+         +    +   D
Sbjct: 61  LVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDED 113


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 58/80 (72%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           GD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+AAA RYTE RMT++A  +L  + +
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 150 DAVDFRDTYNEEDSEPVVFP 169
           + VD+   Y+  +  P V P
Sbjct: 61  ETVDWVPNYDGTEMIPAVLP 80


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (70%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          S+ L    +  + ++  +E+ +L Y++S I  RA+PDLRDG KPVHRRII+AM+++ +  
Sbjct: 5  SDNLGLGKILEIDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLKITS 64

Query: 69 GAAFKKSARIVGEVIGKLHPHG 90
              KKSARIVGEVIGK HPHG
Sbjct: 65 DTPHKKSARIVGEVIGKYHPHG 86


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 73/90 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDE 149
           +IDGDSAAA RYTE R+ ++A  ++  +++
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 124 DSAAAYRYTEARMTQVAELILQG 146
           DSAAA RYTE R+ ++A  ++  
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMAD 84


>gi|18104628|gb|AAL59625.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           L+    ++  +L +  +    I  E+ E+KE F+         +    +   D
Sbjct: 61  LVKLIAELKDILANEYKVLEIIREELMEIKERFNDERRTEIVTSGLETIEDED 113


>gi|18104620|gb|AAL59621.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IR+       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRSSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           L+    ++  +L + ++    I  E+ E+KE F+  
Sbjct: 61  LIKLIAELKEILANEEKVLEIIREELTEIKERFNDE 96


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 67/85 (78%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SARI G+V+GK HPHGD S+Y++ VR+AQ +  RY L+ G GNFG++DGD AAA RYTEA
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYN 159
           RM+++A  +L+ ++++ VDF D Y+
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYD 85


>gi|18104636|gb|AAL59629.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E   
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQT 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           L+    ++  +L +  +    I  E+ E+KE F+         +    +   D
Sbjct: 61  LVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDED 113


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 57/86 (66%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          + ++ +    L   +   +  YA   I+ERA+PD+RDG KPV RR+++ M  +GL +  +
Sbjct: 1  MDKKKIFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKS 60

Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDS 97
          ++KSA  VGEVIGK HPHGD S+Y++
Sbjct: 61 YRKSAATVGEVIGKFHPHGDSSIYEA 86


>gi|332755279|gb|EGJ85643.1| DNA gyrase subunit A domain protein [Shigella flexneri K-671]
          Length = 72

 Score = 90.6 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74
          +  V++   L+  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G D+  A+K 
Sbjct: 8  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKN 65


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|307101850|gb|EFN50438.1| hypothetical protein CHLNCDRAFT_55891 [Chlorella variabilis]
          Length = 154

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597
            +    KE DSL   ++ +  D +L  +T+G+AY+L A ++  G     G A+  ++  +
Sbjct: 1   KAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFD 60

Query: 598 HNQDIVTAFVY--------DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645
            +  I               +   +++++ KG        +  +  R G   + V 
Sbjct: 61  KSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVR 116


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 66/81 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPH D +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAE 141
           IDGDSAAA RYTE R+ ++A 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/105 (39%), Positives = 69/105 (65%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
            +    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++
Sbjct: 2   HDTKHTFDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSM 61

Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166
           DGD  AA RYTEAR++++A  +LQ +++  V F   +++ + EP 
Sbjct: 62  DGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT 106


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 60/70 (85%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGN 120
           L+ GQGNFG+
Sbjct: 61  LVDGQGNFGS 70


>gi|33322733|gb|AAQ07101.1|AF496413_1 topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 122

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D   ++  +   +D++  +  NM  ++     QV  L  IL  +L H  EV+ +R+ F
Sbjct: 1   DADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQV-GLKRILAAYLEHEEEVVTKRTQF 59

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435
            ++    R+EI++GL+ A   +D++I +IR   N+   K  +V+ F+ T  Q +AI++L+
Sbjct: 60  DLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAEFAFTXRQAEAIVSLQ 119

Query: 436 LRS 438
           L  
Sbjct: 120 LYR 122


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 73/90 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDED 150
           IDGDSAAA RYTE R+ ++A  ++  ++++
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|18104642|gb|AAL59632.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           L+    ++  +L +  +    I  E+ E+KE F+         +    +   D
Sbjct: 61  LVKLIGELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDED 113


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 57/79 (72%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147
           PHGD ++Y ++VR+AQP+  RYPL+ GQGNFG+   D  AA RYTEAR+T +A  +++ +
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 148 DEDAVDFRDTYNEEDSEPV 166
            E+ VDF+  Y+   +EPV
Sbjct: 61  RENTVDFQPNYDGRTTEPV 79


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 43  IPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLA 102
           +PD RDG KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+A
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 103 QPFVQRYPLISGQGNFG 119
           Q F  RYP I+GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 8/102 (7%)

Query: 20  VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79
           + +R  L++ +L Y+   IK+RAI  + DGFKPV RRIIH++ EM       F K A +V
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 80  GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           G    K HPHGD S+Y++LV +A   +     I  QGNFGN+
Sbjct: 58  GN-TMKYHPHGDTSIYEALVNIANKDL----FIEKQGNFGNL 94


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 1  MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60
          M  DN           ++ + +   + + +L YA+S I  RA+PDL+DG KPV RRII+A
Sbjct: 3  MSEDN-KELKPFNHGKIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYA 61

Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLH 87
          M ++G+      KKSARIVGEVIGK H
Sbjct: 62 MDDLGITADKPHKKSARIVGEVIGKYH 88


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/95 (74%), Positives = 83/95 (87%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            ARIVG+V+GK HPHGD S+YD+LVRLAQ F  RYPLI GQGNFGNIDGD+AAA RYTEA
Sbjct: 1   CARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEA 60

Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           RMT+VA L+L+G++E+A+DFR TYNEED EPVV P
Sbjct: 61  RMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLP 95


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/86 (52%), Positives = 69/86 (80%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYN 159
           ARM+++A  +L+ ++++ V+F D Y+
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYD 86


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 60/71 (84%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY 
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 111 LISGQGNFGNI 121
           L+ GQGNFG+ 
Sbjct: 61  LVDGQGNFGSR 71


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 67/84 (79%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDE 149
           AAA RYTE R+ ++A  ++  +++
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 72/92 (78%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD ++Y+++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V+F D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|18104634|gb|AAL59628.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 397 YLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             ++D +I++IRN       +  ++ +FSLTE Q  AIL++RL+ L  LE  +I+ E  +
Sbjct: 1   LDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYLS 60

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           L+    ++  +L +  +    I  E+ E+KE F+  
Sbjct: 61  LVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 96


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 66/81 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 121 IDGDSAAAYRYTEARMTQVAE 141
           IDGDSAAA RYTE R+ ++A 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 63/80 (78%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RR+++ M  +G+     + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEA 134
           QGNFG++DGD  AA RYTEA
Sbjct: 61  QGNFGSMDGDPPAAMRYTEA 80


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 68/84 (80%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
            D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 126 AAAYRYTEARMTQVAELILQGVDE 149
           AAA RYTE R+ ++A  ++  +++
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 73/92 (79%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSARI G+V+GK HPHGD+++YD++VR+AQ +  R+ L+ G GNFG++DGD AAA RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165
           ARM+++A  +L+ ++++ V++ D Y+  + EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|33316580|gb|AAQ04610.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 97

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF--- 606
           +      T D IL  +T G+ Y   A  L        G+ +  L+     + I       
Sbjct: 6   RRHFCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIK 65

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638
            Y+    L++ +  G     + ++  +N   G
Sbjct: 66  SYEDAPYLVLATQNGLVKKSKLTDFDSNRSGG 97


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++ M+E+G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY 
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 111 LISGQGNFG 119
           L+ G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|227496005|ref|ZP_03926316.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834493|gb|EEH66876.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 310

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 87/255 (34%), Gaps = 33/255 (12%)

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575
             +P  V++S  G +  +            +  D+L   +      R+ +++  G+   +
Sbjct: 9   PDDPCRVLLSATGLVARVAGAEAVPRTGERQRHDALTSQVPTTARSRVGVVTDTGRLVVM 68

Query: 576 PAGNLLS--------GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK--LLVVSSKGNAFI 625
              +               G+ + LL+DL   + +V         +  +++ ++ G    
Sbjct: 69  EVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREPVVLATAGGVIKR 128

Query: 626 VEESEIIANTRKGKT--FLKVSSEEKMKLVVKVTGDHVA-VVGENRKLLIFSIDQIPEMS 682
           V+  +  A   +G++   + ++  +++          V  +V ++ +LL F   ++    
Sbjct: 129 VKPGDEPA---RGESWEVISLADGDRVVFAGIAADTDVLTLVTDDAQLLRFEASKVRPQG 185

Query: 683 RG-KGVRLQSYKDG--------------GISDVICFKICEGLTWIDSAGRSYNRSENDLL 727
           RG  G+   S  +G                + V+     EG      +G S   +  D  
Sbjct: 186 RGAAGMAGISLHEGARVIAGASVPAELLAEAVVVTIADAEGALPGMDSG-SVKVTPLDRY 244

Query: 728 GWLGKRGGVGSLVPK 742
              G R   G    +
Sbjct: 245 PAKG-RATGGVRAQR 258


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 68/84 (80%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAELILQ 145
           DGDSAAA RYTE R+ ++A  ++ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMA 84


>gi|163788233|ref|ZP_02182679.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
 gi|159876553|gb|EDP70611.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
          Length = 183

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT--WIDSAGRS 718
            +  ++ K + F   +   M R   GVR    +D    +VI     + +    +  +   
Sbjct: 1   MLALKSGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMDSNILVVSENG 60

Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           Y +  +     +  RGG G        ++G  +S
Sbjct: 61  YGKRSSLEDYRITNRGGKGVKTISITEKTGNLVS 94



 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 7/141 (4%)

Query: 569 DGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIV 626
            GKA           GR       + +   +  +++     D     +LVVS  G     
Sbjct: 6   SGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMDSNILVVSENGYGKRS 65

Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGENRKLLIFSIDQIPEMS 682
              +     R GK    +S  EK   +V        D + ++ ++   +  ++  +  M 
Sbjct: 66  SLEDYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMG 125

Query: 683 RGK-GVRLQSYKDGGISDVIC 702
           R   GV+L + K       + 
Sbjct: 126 RATQGVKLINLKGKDSIAAVA 146


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 64/80 (80%)

Query: 82  VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG++DGD AAA RYTEARM+++A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 142 LILQGVDEDAVDFRDTYNEE 161
            +L+ +++D VDF+  Y++ 
Sbjct: 61  EMLRDINKDTVDFQSNYDDT 80


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/80 (65%), Positives = 67/80 (83%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           + +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+I
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 122 DGDSAAAYRYTEARMTQVAE 141
           DGDSAAA RYTE RM+++A 
Sbjct: 61  DGDSAAAMRYTEVRMSKIAH 80


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           E+R+++++E++L  + +  VD++  ++   +EP   P++
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 63/79 (79%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQG 146
           A RYTE R+ ++A  ++  
Sbjct: 61  AMRYTEIRLAKIAHELMAD 79


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 53/64 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 101 LAQP 104
           +AQ 
Sbjct: 61  MAQD 64


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 67/99 (67%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA R
Sbjct: 2   SYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMR 61

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFP 169
           YTEAR++++A  +LQ +++  V F   +++ + EP    
Sbjct: 62  YTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTACQ 100


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/81 (62%), Positives = 65/81 (80%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G D+  A+KKSAR VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 125 SAAAYRYTEARMTQVAELILQ 145
           SAAA RYTE R+ ++A  ++ 
Sbjct: 61  SAAAMRYTEIRLAKIAHELMA 81


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 68/83 (81%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSA
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 127 AAYRYTEARMTQVAELILQGVDE 149
           AA RYTE R+ ++A  ++  +++
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEK 83


>gi|67464191|pdb|1X75|A Chain A, Ccdb:gyra14 Complex
 gi|67464192|pdb|1X75|B Chain B, Ccdb:gyra14 Complex
          Length = 132

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 37/132 (28%)

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416
            RR+ F ++    R  IL+ L +A  NID II +IR+   P                   
Sbjct: 1   TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 60

Query: 417 ---------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
                                    + LTE Q  AIL+LRL+ L  LE  ++  E   LL
Sbjct: 61  MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 120

Query: 456 AEKEKIDSLLNS 467
            +  ++  +L S
Sbjct: 121 DQIAELLRILGS 132


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 54/66 (81%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
           + RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++
Sbjct: 1   RARALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAM 60

Query: 99  VRLAQP 104
           VR+AQ 
Sbjct: 61  VRMAQD 66


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 53/64 (82%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVHRRI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQP 104
           +AQ 
Sbjct: 61  MAQD 64


>gi|224613376|gb|ACN60267.1| DNA topoisomerase 2-alpha [Salmo salar]
          Length = 742

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/381 (13%), Positives = 126/381 (33%), Gaps = 65/381 (17%)

Query: 155 RDTYNE-EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
           +  Y++ +  EP  +    P +L NG  GI  G A+ IP+ +++EI      +++     
Sbjct: 5   KYNYDDNQRVEPEWYIPIIPTVLVNGADGIGTGWASRIPNFDIREIVNNIHRMLNG---- 60

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273
            E+ L  +       G I     + ++ +  +  G   +     +E          ++E+
Sbjct: 61  -EEPLPLLPSYKGFKGTI-----DQLMTNQYMNNGEVAIIDSTTIE----------ISEL 104

Query: 274 PYQVQKSRLIEKIAELII---AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
           P +       E + E ++    K   L+ D ++   +     +         +     + 
Sbjct: 105 PVKTWTQAYKENVLEPMLNGTEKVQALITDYKEYHTDTAVRFVVKMTEERLREAEAAGLH 164

Query: 331 MLSDMETRFPLNMNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRS------------ 376
            +  ++     N  VL      + +   +  ILK++   R +    R             
Sbjct: 165 KVFKLQQSLTCNSMVLFDHVGSLKKYELVQDILKDFFELRMKYYVLRKDWLAGMLGAESA 224

Query: 377 ------SFRMQAIDRRVEI----LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--- 423
                  F ++ I+  + I     K L++    +      ++   + +    S       
Sbjct: 225 KLTNQARFILEKIEGTLVIENKPKKQLILMLTEMGYDSDPVKAWKEAQEKDRSVEETQDD 284

Query: 424 ---------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                    T    + +LN+ +  L K ++ ++  + D  + E   +     S    W  
Sbjct: 285 EEEDKEEDATGPDYNYLLNMPMWYLTKEKKEELCKQRDAKMTELNTLKK--KSPADLW-- 340

Query: 475 IACEIREVKEIFSKSTDLGRR 495
              ++    E   +  +  R+
Sbjct: 341 -KEDLAAFTEELERVEEKDRQ 360


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 67/82 (81%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
           +  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAA
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 128 AYRYTEARMTQVAELILQGVDE 149
           A RYTE R+ ++A  ++  +++
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 53/67 (79%)

Query: 41  RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100
           RA+PD+RDG KPVH RI++ ++E G+     +KKSARIVG+V+GK HPHGD S+Y+++VR
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 101 LAQPFVQ 107
           +AQ F  
Sbjct: 61  MAQDFSY 67


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 6  ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          ++N N    E ++ + LR   E+ YL Y++  I +RA+P + DG KPV RRI++AMSE+G
Sbjct: 1  MTNINY---EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELG 57

Query: 66 LDFGAAFKKSARIVGEVIG 84
          L+  A +KKSAR VG+V+G
Sbjct: 58 LNATAKYKKSARTVGDVLG 76


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 65/80 (81%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
            M+E+G+    A KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  RY L+ G GNFG
Sbjct: 1   GMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFG 60

Query: 120 NIDGDSAAAYRYTEARMTQV 139
           ++DGD AAA RYTEARM+++
Sbjct: 61  SVDGDGAAAMRYTEARMSKI 80


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 65/79 (82%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARM 136
           FG++DG +AAA RYTE RM
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A   I +RAIP + DG KPV RRI+H +  M         K A + G+ +   HPHGD  
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEA 134
           + ++LV +A     R  L+  QGNFGNI  GD AAA RY E 
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIET 94


>gi|1617512|gb|AAC82506.1| topoisomerase subunit ParC [Neisseria gonorrhoeae]
          Length = 155

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-------VA 662
                L+ SS G  FI +  +++   + GK  +   S E +   V V           + 
Sbjct: 4   PEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKII 63

Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722
                 + L F I ++  M++GKG+++    + G S        E    I+S GR     
Sbjct: 64  AATSQNRALAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIESEGRRGAAH 122

Query: 723 ENDLLGWL--GKRGGVGSLVP 741
           ++ L   L   KRG  G L+P
Sbjct: 123 KDRLPVALIEAKRGKKGRLLP 143


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 61/77 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG 60

Query: 124 DSAAAYRYTEARMTQVA 140
           DSAAA RYTEARM+++A
Sbjct: 61  DSAAAQRYTEARMSKIA 77


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 9/101 (8%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A   I +RAIP + DG KPV RRI+H +  M         K A + G+ +   HPHGD  
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTE 133
           + ++LV +A     R  L+  QGNFGNI  GD AAA RY E
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 65/79 (82%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           ++AM E+  ++ AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 118 FGNIDGDSAAAYRYTEARM 136
           FG++DG +AAA RYTE RM
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 59/84 (70%)

Query: 39  KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSL 98
            +R +P + DG  PV RRI++AMS +G++  A FK SAR VG+ +GK HPHGD + Y+ +
Sbjct: 7   MDRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDM 66

Query: 99  VRLAQPFVQRYPLISGQGNFGNID 122
             +AQPF  RYPL+ GQGN+G  D
Sbjct: 67  FLMAQPFSYRYPLVDGQGNWGAPD 90


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 76/91 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDF 154
           D+AAA RYTEARMT++AE +L+ +D+D V+F
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 21  SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80
            L    +  +  YA   I ERAIP + DG KPV RR++  +  M         K A I G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
             +  LHPHGD  + ++LV LA     +  LI  QGNFGN 
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKRFLIETQGNFGNP 95


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 65/77 (84%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           HRRI++AM+++G+   +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I 
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 114 GQGNFGNIDGDSAAAYR 130
           GQGNFG+IDGD AAA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|313609053|gb|EFR84774.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT-RKGKTFLKVSSEEKMKLVVK 655
              + ++    +    + L V+  G       +        K    +K+  ++++  V  
Sbjct: 1   EEIRSVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHL 60

Query: 656 VTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWI 712
           + G + + +  +N   L +++ +IPE   R  GV+  + K D  +   +     E    +
Sbjct: 61  IDGTEDIFLATKNGYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNEQKHIL 120

Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG--KFLS 752
            +  R   +           R   G L+ +   +S   +F+ 
Sbjct: 121 LATQRGSLKQMKASEFEPISRAKRGLLMLREL-KSNPHRFIG 161



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKIALH 556
              ++ +      +E   + ++  G  +     +           A+  K  D L     
Sbjct: 1   EEIRSVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHL 60

Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTCKL 614
              T+ I L + +G         +         ++  I+L  +  ++     + +    +
Sbjct: 61  IDGTEDIFLATKNGYGLRYAVAEIPESGARTAGVKA-INLKQDDMVIGGVVLMPNEQKHI 119

Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----EEKMKLVVKVT-GDHVAVVGENRK 669
           L+ + +G+   ++ SE    +R  +  L +        +   +      DH+ +     +
Sbjct: 120 LLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIGITLADNNDHLFIETNTDQ 179

Query: 670 LLIFSIDQIPEMSR 683
           ++   +  +    R
Sbjct: 180 IVEIDVANLRITDR 193



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
            R L ++ +G        N    R + +++   I L  + ++++  + D T  + + +  
Sbjct: 16  QRFLFVTKNGMTKQSAITNYKPQR-YSKSMMA-IKLKGDDELLSVHLIDGTEDIFLATKN 73

Query: 621 GNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSI 675
           G       +EI        G   + +  ++ +   V +      H+ +  +   L     
Sbjct: 74  GYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNEQKHILLATQRGSLKQMKA 133

Query: 676 DQIPEMSRGK 685
            +   +SR K
Sbjct: 134 SEFEPISRAK 143


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MGVD--NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58
          M  D  +       +   VK   +   +E+ Y+ YA+S I  RA+PD+RDG KPVHRRI+
Sbjct: 1  MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 59 HAMSEMGLDFGAAFKKSARIVG 80
          +AM + G+   ++ +KS+ IVG
Sbjct: 61 YAMHQAGVTSNSSHRKSSSIVG 82


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQV 139
            AAA RYTEARM+++
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 54/79 (68%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           R+++AM + G     +  KSAR V E +G  HPHGD S+Y SLVR+AQP+  RYPL+ GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 116 GNFGNIDGDSAAAYRYTEA 134
           GNFG+   D  AA RYTEA
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 50  FKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
            KP  RRI++AMSE+GL+  + FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 110 PLISGQGNFG-NIDGDSAAAYR 130
           PL+ GQGN+G   D  S AA R
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMR 82


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 57/74 (77%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125
           +      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD 
Sbjct: 1   VTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDG 60

Query: 126 AAAYRYTEARMTQV 139
           AAA RYTEARM+++
Sbjct: 61  AAAQRYTEARMSKI 74


>gi|2197131|gb|AAB61299.1| GyrA [Streptomyces ambofaciens]
          Length = 88

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307
              +RA   VEE+ +   C+VVTE+PYQ     L +KIA+L+   ++  + D+RDE++  
Sbjct: 1   SITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSLR 59

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDME 336
             + ++    R +   +++ +++  +D++
Sbjct: 60  TGQRLVIVLKRDVVAKVVLNNLYKHTDLQ 88


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTEARMT++AE  L+ +D+D V
Sbjct: 61  DNAAAMRYTEARMTRIAEEALRDLDKDTV 89


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQVA 140
            AAA RYTEARM+++A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/89 (64%), Positives = 72/89 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTE RMT++AE  L+ +D+D V
Sbjct: 61  DNAAAMRYTEVRMTRIAEEALRDLDKDTV 89


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
           G+      KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 125 SAAAYRYTEARMTQVA 140
            AAA RYTEARM+++A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          +   V  +++   L  AL ERYLAYA+STI  R++PD+RDG KPVHRR++ AM ++ LD 
Sbjct: 2  TQPAVTGDIRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 69 GAAFK 73
             F+
Sbjct: 62 SGGFR 66


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 59/79 (74%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNEE 161
           IL+ +++D VDF   Y++ 
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTEARMT++AE +L+ +D+D V
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
             +   +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   FRITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTEARMT++AE +L+ +D+D V
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 62/87 (71%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127
               +KKSAR VGEVIGK HPHGD S+Y+++VR++Q +     L+   GN G+IDGD+AA
Sbjct: 3   HDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAA 62

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDF 154
           A RYTE R++++A ++L  + +D V F
Sbjct: 63  AMRYTETRLSKIASVMLTNLKKDVVKF 89


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 46  LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105
           +RDG KPVHRR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 106 VQRY 109
             RY
Sbjct: 61  SLRY 64


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 57/80 (71%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 71/89 (79%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           + +    A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F  R PL+ GQGNFG+IDG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAV 152
           D+AAA RYTE R T++AE +L+ +D+D V
Sbjct: 61  DNAAAMRYTEVRTTRIAEEVLRDLDKDTV 89


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261
             + LIDNP+ + ++LL  I GPDFPTG  I+ ++  I   +  G+G   +R++  +E++
Sbjct: 1   GLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTK-GIESYFETGKGNVVIRSKVEIEQL 59

Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
            +    +VVTEIPY V K+ LIEKI EL+ A+ I  + D
Sbjct: 60  -QTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIAD 97


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 60/79 (75%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142
           IG+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E 
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 143 ILQGVDEDAVDFRDTYNEE 161
           IL+ +++D VDF   Y++ 
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/89 (49%), Positives = 63/89 (70%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++ AM+ +G D+  A+KKSA +VG VIGK HPH D + Y + VR+AQP   RY L+ GQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQ 145
            +G IDGDSAAA R++E R+ ++A  ++ 
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIAHGLMA 90


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
            +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA 
Sbjct: 1   RSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAM 60

Query: 130 RYTEARMTQVAELILQG 146
           RYTEAR+T +A  +L+ 
Sbjct: 61  RYTEARLTPLAMEMLRE 77


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  F   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI+ AM   G  +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 116 GNFGNIDGDSAAAYRYTEAR 135
           GN G+ID D  AA RYTEA+
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 60/69 (86%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 132 TEARMTQVA 140
           TE R+ ++A
Sbjct: 61  TEIRLAKIA 69


>gi|321473415|gb|EFX84382.1| hypothetical protein DAPPUDRAFT_3936 [Daphnia pulex]
          Length = 269

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 25/258 (9%)

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219
            +  EP  F    P +L NG +GI  G  T IP  N +EI E    +++  +        
Sbjct: 9   NQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIENLKRMLNGEK-------- 60

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
               P  P       + E I +   +  G   V +   +E          +TE+P  V  
Sbjct: 61  --PNPMDPWFKGYRGTVERIDQFNFVISGELAVLSPTTIE----------ITELPVDVPT 108

Query: 280 SRLIEKIAELII---AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
               + + E ++    +  P++ D ++   ++    +      +   +  E       ++
Sbjct: 109 ENYKKSVLEKLLCGSEECPPIITDYQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQ 168

Query: 337 TRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           + + L   +L  S G +     +D I+ E+   R E+  +R  +    ++     L    
Sbjct: 169 SVYSLRSMLLYDSNGSLKTYNSVDDIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQN 228

Query: 395 IAYLNIDEIIAIIRNEDK 412
                I   + I+ +E K
Sbjct: 229 NFLTEISSKVLIVDSEKK 246


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/76 (61%), Positives = 63/76 (82%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDE 149
            R+ ++A  ++  +++
Sbjct: 61  IRLAKIAHELMADLEK 76


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           RRI+  M +MGL    A  KS+R+VG+V+G+LHPHGD ++YD++VRLAQPF  R PL+ G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 115 QGNFGNIDGDSAAAYRYTEARM 136
            GNFG++D D  AA RYTEAR+
Sbjct: 61  HGNFGSLD-DGPAASRYTEARL 81


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/78 (57%), Positives = 62/78 (79%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
            + IVG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DGD+ AA RYTE 
Sbjct: 1   MSVIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 60

Query: 135 RMTQVAELILQGVDEDAV 152
           RM++VA  +L  ++++ V
Sbjct: 61  RMSKVAHALLADLEKETV 78


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
          + L  + V+   L    E  YL Y++  I +RA+P + DG KPV RRI++AMSE+GL   
Sbjct: 2  SELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNT 61

Query: 70 AAFKK 74
          A FK 
Sbjct: 62 AKFKN 66


>gi|321472241|gb|EFX83212.1| hypothetical protein DAPPUDRAFT_315938 [Daphnia pulex]
          Length = 206

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 22/199 (11%)

Query: 40  ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99
           ER+ P L DG K   R+++  +     D      + A  V E     +  G  S+   ++
Sbjct: 4   ERSTPSLIDGLKLEQRKVLFTVLN-RNDKDVNVARLALSVAEHTALHYEPG--SLMRPIM 60

Query: 100 RLAQPF--VQRYPLISGQGNFG--NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
            +AQ F       L+   G FG  +  G  AA+       ++++  LI    D+  +  R
Sbjct: 61  WMAQDFVGSNNVSLLIPNGQFGTRHQGGKDAASPPLISTSISKLTRLIFHPQDDPLLTHR 120

Query: 156 DTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIE 215
              ++   EP  +    P +L NGTS I +       S+N ++I E    ++D+ E    
Sbjct: 121 MDGDQSI-EPEFYAPIIPLILVNGTSRIGM-------SYNPRDITENLKRMLDDDE---- 168

Query: 216 KLLEYIIGPDFPTGGIIVE 234
              E I    +  GG++ E
Sbjct: 169 ---EPIPMDPWFKGGLLKE 184


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 1/90 (1%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAA 128
           A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+    D  S   
Sbjct: 1   AKFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPDDPKSFVV 60

Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTY 158
            RYTE+R+++ AE++L  + +  VD+   +
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDWVPNF 90


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y ++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 54/68 (79%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 116 GNFGNIDG 123
           GNFG+IDG
Sbjct: 61  GNFGSIDG 68


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 53  VHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
             RRII+AMSE+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+
Sbjct: 3   GQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLV 62

Query: 113 SGQGNFG-NIDGDSAAAYRYTE 133
            GQGN+G   D  S AA R+TE
Sbjct: 63  DGQGNWGAPDDPKSFAAMRFTE 84


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/88 (64%), Positives = 72/88 (81%)

Query: 65  GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124
            +    A+KKSARIVG+VIGK HPHGD SV+D+LVR+AQ F  R PL+ GQGNFG++DGD
Sbjct: 2   KITTKNAYKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGD 61

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAV 152
           SAAA RYTEARMT++AE +L+ +D+D V
Sbjct: 62  SAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G+      KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF  R  L+ G GNFG++DG
Sbjct: 1   LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDG 60

Query: 124 DSAAAYRYTEARM 136
           D AAA RYTEARM
Sbjct: 61  DGAAAMRYTEARM 73


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPP 60

Query: 127 AAYRYT 132
           AA RY 
Sbjct: 61  AAMRYC 66



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 47/65 (72%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            TEA +T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 263 NTEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 322

Query: 191 IPSHN 195
           IP HN
Sbjct: 323 IPPHN 327


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G 
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDT 157
             D  S AA RYTEA+++  +EL+L  + +   +++D 
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN 98


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 44/68 (64%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 5   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 64

Query: 127 AAYRYTEA 134
           AA RY   
Sbjct: 65  AAMRYCVT 72



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 490 NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 549

Query: 191 IPSHN 195
           IP HN
Sbjct: 550 IPPHN 554


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score = 77.9 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 60/76 (78%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
              KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA 
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 130 RYTEARMTQVAELILQ 145
           RYTEARM+++A  +L+
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 2   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 61

Query: 127 AAYRYT 132
           AA RY 
Sbjct: 62  AAMRYC 67



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 486 NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 545

Query: 191 IPSHN 195
           IP HN
Sbjct: 546 IPPHN 550


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARMTQV 139
           YTEA     
Sbjct: 61  YTEAHTKPF 69


>gi|74149415|dbj|BAE36361.1| unnamed protein product [Mus musculus]
          Length = 375

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/388 (12%), Positives = 113/388 (29%), Gaps = 72/388 (18%)

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
             G +  IP+ +V+E+      L+D  E            P  P+      + E +  + 
Sbjct: 1   GTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQ 50

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII---AKRIPLLED 300
            +  G   +     +E          ++E+P +       E++ E ++    K   L+ D
Sbjct: 51  YVINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITD 100

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RVPQVMPLD 358
            R+   +     +         +     +  +  +++    N  VL      + +   + 
Sbjct: 101 YREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVL 160

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            IL+++   R +    R  + +  +    E  K    A   +++I   I  E+KPK  ++
Sbjct: 161 DILRDFFELRLKYYGLRKEWLLGML--GAESSKLNNQARFILEKIDGKIVIENKPKKELI 218

Query: 419 SRFSLTENQVD---------------------------------------AILNLRLRSL 439
                     D                                        +L++ L  L
Sbjct: 219 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYL 278

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN----QIACEIREVKEIFSKSTDLGRR 495
            K ++ ++  + +    E   +     S    W         E+  V+    +   +G  
Sbjct: 279 TKEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKEDLAVFIEELEVVEAKEKQDEQVGLP 336

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVV 523
                   +  +         +    + 
Sbjct: 337 GKAGKAKGKKAQMCADVLPSPRGKRVIP 364


>gi|87295001|gb|ABD36913.1| putative type IIA topoisomerase [Moraxella osloensis]
          Length = 80

 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 45/80 (56%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           +   EP+TV++S  GWIRS K H VD + ++++ GD+        + +++ L+   G++Y
Sbjct: 1   LAPSEPVTVIVSKSGWIRSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSY 60

Query: 574 TLPAGNLLSGRGHGEAIQLL 593
            + A  L S RG  E +  L
Sbjct: 61  RIDAHALPSARGQSELLTSL 80


>gi|76664886|emb|CAJ17879.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 135

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 396 AYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
              +ID  I +I++    K      +S++   E Q  AIL + L+ L   E  ++ +E  
Sbjct: 1   ILKDIDTAIRLIKSSADIKEAQQNLMSQYRFDEIQSKAILEMSLQKLANQETQKLITEEA 60

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           NL  E  +  S+++S  ++   +  E+ E+K+ +         R T             +
Sbjct: 61  NLTQEILECQSIIDSQTKKEKILEKELLEIKKKYQDE------RKTVLNFDA-SLDVKDE 113

Query: 513 AMIEKEPITVVISNRGWIRSLK 534
            +IE++ I V I+N G+I+S+ 
Sbjct: 114 DLIEEKTIVVTITNEGYIKSVD 135


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 53/72 (73%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 54/69 (78%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARMTQV 139
           YTEA     
Sbjct: 61  YTEAHTKPF 69


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 60/74 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 132 TEARMTQVAELILQ 145
           TEARM+++A  +L+
Sbjct: 61  TEARMSKIALEMLR 74


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 56/65 (86%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123
           +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG++DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 124 DSAAA 128
           DSAAA
Sbjct: 61  DSAAA 65


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 58/77 (75%)

Query: 56  RIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           RI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 116 GNFGNIDGDSAAAYRYT 132
           GNFG+IDGDSAAA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 G-NIDGDSAAAYRYTEARMTQVAE 141
           G   D  S AA RYTE+R+++ AE
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|402872|gb|AAA21849.1| DNA gyrase subunit A [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 195

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++ + +G+A T P        G G      I L    ++++     +  K+L ++ K
Sbjct: 1   DLLMIATKNGQAVTFPISCF-RAMGRGTHGVKGITLAEGDEVISLLWLKAGNKILTITEK 59

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD-HVAVVGENRKLLIFSID 676
           G     E        R  K    ++  +K+     V  V  D  + +  ++ +++     
Sbjct: 60  GYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQVIRIKAA 119

Query: 677 QIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEGL 709
            I    R  +GV+  + +DG  + D       E +
Sbjct: 120 DIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDI 154



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGLTWIDSAG 716
           D + +  +N + + F I     M RG  GV+  +  +G   +VI    +  G   +    
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEG--DEVISLLWLKAGNKILTITE 58

Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751
           + Y +        + +RG  G        + G  +
Sbjct: 59  KGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAV 93


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            TEAR+T +A  I++ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 483 NTEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 542

Query: 191 IPSHNVQE 198
           IP HN  E
Sbjct: 543 IPPHNKGE 550



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 44/64 (68%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA
Sbjct: 1   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 60

Query: 129 YRYT 132
            RY 
Sbjct: 61  MRYC 64


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 G-NIDGDSAAAYRYTEARMTQVAE 141
           G   D  S AA RYTE+R+++ AE
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 G-NIDGDSAAAYRYTEARMTQVA 140
           G   D  S AA RYTE+R+++ A
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYA 83


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 G-NIDGDSAAAYRYTEARMTQVAE 141
           G   D  S AA RYTE+R+++ AE
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
          L ++ +  +++   ++  Y+ Y++S I  RA+PD+RDGFKPVHRRI+  M 
Sbjct: 2  LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMM 52


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           SAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  AA RYTEA
Sbjct: 1   SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 135 RMTQVAELILQG 146
           R+T +A  +L+ 
Sbjct: 61  RLTPLAMEMLRE 72


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG VIG+ HPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q+AE +L+ ++++ V F 
Sbjct: 61  AKLSQLAEELLRDINKETVSFV 82


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/65 (66%), Positives = 53/65 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEAR 135
           YTEA 
Sbjct: 61  YTEAH 65


>gi|254168976|ref|ZP_04875815.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
 gi|197622082|gb|EDY34658.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
          Length = 153

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 6/143 (4%)

Query: 559 TT--DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616
           T   + I L +  GKA      ++         +   I L    +++++ V      +  
Sbjct: 4   THGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIG-IKLQDGDEVISSAVESEGPYVFA 62

Query: 617 VSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674
           V S G        E     R G     + + +   +K ++    D   ++ +N   +   
Sbjct: 63  VLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALLLTKNGMSIRIK 122

Query: 675 IDQIPEMSR-GKGVRLQSYKDGG 696
           +  +  M R  +GV+L    DG 
Sbjct: 123 LRDVSVMGRNARGVKLIKLDDGD 145



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI-CEGLTWIDSA 715
           G+ + +  +  K + FS D +  M R  +GV     +DG   +VI   +  EG       
Sbjct: 7   GEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDG--DEVISSAVESEGPYVFAVL 64

Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVP 741
              Y +          +RGG+G    
Sbjct: 65  SSGYGKRTPIGEYRRIRRGGMGVRNI 90



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           +R +   +  +  +  ++GD +  +        +  + + G     P G     R  G  
Sbjct: 27  VRVMGRTARGVIGIKLQDGDEVISSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMG 86

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTFLKVSSE 647
           ++ +     N  +V + +     + L+++  G +  ++  +  ++    +G   +K+   
Sbjct: 87  VRNISI--RNATVVKSLLTTENDEALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDG 144

Query: 648 EKMKLVVKV 656
           +++    K+
Sbjct: 145 DEVVNAAKL 153


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEARMTQV 139
           TEA     
Sbjct: 61  TEAHTKPF 68


>gi|156311443|ref|XP_001617785.1| hypothetical protein NEMVEDRAFT_v1g69871 [Nematostella vectensis]
 gi|156195794|gb|EDO25685.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENR 668
               +++ + KG     +  +     + G   + +   +++       GD+ + +  ++ 
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQEGDELLEAKLTDGDNYIMMAVKSG 60

Query: 669 KLLIFSIDQIPEMSRGK-GVRLQSYKD 694
           + + F   ++    RG  GV      D
Sbjct: 61  RAICFEESKVRPTGRGAIGVNGIELSD 87


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEAR 135
           YTEA 
Sbjct: 61  YTEAH 65


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 60/74 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
            KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 132 TEARMTQVAELILQ 145
           TEARM+++A  +L+
Sbjct: 61  TEARMSKIALEMLR 74


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           +AMSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 119 G-NIDGDSAAAYRYTEARMTQVAE 141
           G   D  S AA RYTE+R+++ +E
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYSE 84


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 55/66 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARM 136
           YTEA+ 
Sbjct: 61  YTEAQK 66


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|315273180|ref|ZP_07869219.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616193|gb|EFR89279.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 171

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWL 730
           F  + I  M R   GVR    ++    +VI  ++ E     +    + Y +        L
Sbjct: 2   FPEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPL 59

Query: 731 GKRGGVGSLVPKGFPRSGKFLS 752
             RGG+G        ++G  ++
Sbjct: 60  RNRGGMGVKTVTITEKNGNLVA 81



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 20  IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 79

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F I+ + +  R   GV+L    +      + 
Sbjct: 80  VAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 133



 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IR +   +  +  +  +E D +         +++L+++  G     PA         G  
Sbjct: 7   IRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMG 66

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           ++ +     N ++V          L++++  G     E   +    R   G   +++  +
Sbjct: 67  VKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDED 126

Query: 648 EKMKLVVKV 656
           EK+  V KV
Sbjct: 127 EKVATVAKV 135



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           ++  T  G   +++  ++++  +  +  D  V VV E          Q P  +R G GV+
Sbjct: 9   VMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVK 68

Query: 689 --LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               + K+G +  +      E L  +  +G                R  +G  + +   
Sbjct: 69  TVTITEKNGNLVAMKTVTGEEDLMLMTVSG--VLIRFEIETVSQTGRSAMGVKLIRLDE 125


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY+++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 132 TEA 134
           TEA
Sbjct: 61  TEA 63


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190
            TEAR+T +A  +L+ +DE+ VDF   Y+    EP V PS+FPNLLANG+ GIAVGMAT+
Sbjct: 485 NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 544

Query: 191 IPSHN 195
           IP HN
Sbjct: 545 IPPHN 549



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 43/68 (63%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG+      
Sbjct: 1   RPARSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPP 60

Query: 127 AAYRYTEA 134
           AA RY   
Sbjct: 61  AAMRYCVT 68


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 50/61 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARM 136
           YTEA+ 
Sbjct: 61  YTEAQK 66


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 49/63 (77%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
               KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGDSAAA
Sbjct: 1   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAA 60

Query: 129 YRY 131
            RY
Sbjct: 61  QRY 63


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 56/67 (83%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           KKSARI G+V+GK HPHGD S+Y+++VR+AQ +  RY L+ G GNFG++DGD AAA RYT
Sbjct: 1   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 60

Query: 133 EARMTQV 139
           EARM+++
Sbjct: 61  EARMSKI 67


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 2   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 61

Query: 131 YTEA 134
           YTEA
Sbjct: 62  YTEA 65


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 105 FVQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEED 162
                 L+   G FG     G   +A RY   ++ ++   +   +D+   ++    +E  
Sbjct: 4   GSNNLNLLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLDDPLYNYLQ-DDEST 62

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            EP  +    P LL NG  GI  G +T+IPS N  +I      L++  ++  E++  +  
Sbjct: 63  VEPEWYLPVIPMLLVNGAEGIGTGWSTNIPSFNPADIVANIRRLMEGGDL--EEMYPWFR 120

Query: 223 GPDFPTGGIIVE 234
           G +     I   
Sbjct: 121 GWEGEIEKIDSG 132


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62
            L    VK++SL   LE  ++ YA+S I  RA+PD RDG KPVHRR+++   
Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAY 65


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++ M+E+G+     +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F  RY L+ G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 117 NFGN 120
           NFG+
Sbjct: 61  NFGS 64


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVAFI 82


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRD 156
           EAR++Q++  +L+ +D+  VDF  
Sbjct: 61  EARLSQLSGELLKDIDKSTVDFVW 84


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 61/82 (74%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 61/84 (72%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN G++DGD  AA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 133 EARMTQVAELILQGVDEDAVDFRD 156
           EAR++Q++  +L+ +D++ VDF  
Sbjct: 61  EARLSQLSGELLKDIDKNTVDFVW 84


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 47/69 (68%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPV RRI+++M++    F  +++KSA+ VG ++G  HPHGD S+YD++VR++Q +     
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 111 LISGQGNFG 119
           L+   GN G
Sbjct: 61  LVEMHGNNG 69


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 58/70 (82%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RIVG+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQG 146
           T++   +L+ 
Sbjct: 61  TKITLELLRD 70


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAA 127
               KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S A
Sbjct: 3   SGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFA 62

Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTY 158
           A RYTEA+++  +EL+L  + +   +++D +
Sbjct: 63  AMRYTEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN GNID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +L+ ++++ V F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KS+RIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARM 136
           YTEA +
Sbjct: 61  YTEAHL 66


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/61 (65%), Positives = 50/61 (81%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 Y 131
           Y
Sbjct: 61  Y 61


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 62/82 (75%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN G+ID D  AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A+++Q++E +++ ++++ V F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
            + KSARIVG+V+GK HPHGD+ VYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEARM 136
           YTEA++
Sbjct: 61  YTEAQI 66


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 46/61 (75%)

Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159
           R+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A  ++  ++++ VDF D Y+
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106

Query: 160 E 160
            
Sbjct: 107 G 107


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           + KSARIVG+V+GK HPHGD SVY ++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 63/82 (76%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133
           KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +   + LI  QGN G+ID D AAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 134 ARMTQVAELILQGVDEDAVDFR 155
           A++++++E +L+ ++++ V F 
Sbjct: 61  AKLSRISEELLRDINKETVPFM 82


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 74.0 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
              KSARIVG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA R
Sbjct: 1   KIFKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 131 YTEA 134
           YTEA
Sbjct: 61  YTEA 64


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|213621007|ref|ZP_03373790.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 72

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 44/72 (61%)

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           M+SRF ++E Q +AIL L+LR L KLEE +I+ E D L  E++++  +L S ++    + 
Sbjct: 1   MMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLK 60

Query: 477 CEIREVKEIFSK 488
            E++   + +  
Sbjct: 61  KELQADSDAYGD 72


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           RI+G+V+GK HPHGD S+Y+++VR+AQ F  RYPL+ GQGNFG++DGD AAA RYTEARM
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 137 TQVAELILQG 146
           T++   +L+ 
Sbjct: 61  TKITLELLRD 70


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 61/79 (77%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
            +AM+    ++  A +KSAR+VG+VIGK +PHGD +VYD++V +AQPF QRY L+ GQGN
Sbjct: 2   FYAMNIKANEWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGN 61

Query: 118 FGNIDGDSAAAYRYTEARM 136
           FG IDGDSAAA R TE R+
Sbjct: 62  FGCIDGDSAAAVRKTELRL 80


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 61/80 (76%), Gaps = 1/80 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTEARMTQVAE 141
           D  S AA RYTE+R+++ +E
Sbjct: 62  DPKSFAAMRYTESRLSKYSE 81


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 57/67 (85%)

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129
           AA+KKSARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA 
Sbjct: 1   AAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAM 60

Query: 130 RYTEARM 136
           RYTE RM
Sbjct: 61  RYTEIRM 67


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 249 GFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
              +RAR  VE +   G   I+V EIPYQV K+RLIEKIAEL+  KR+  +  +RDES +
Sbjct: 1   KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 60

Query: 308 DVRIVLFPKNRSLDPDLL 325
           D   ++    R    +++
Sbjct: 61  DGMRIVIEVKRDAVGEVV 78


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 50/66 (75%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP+V P+  PNLL NG +GIAVGMAT IP+HN+ E+ +  ++ I N  ISI +L+++I G
Sbjct: 3   EPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHIKG 62

Query: 224 PDFPTG 229
           PDFPTG
Sbjct: 63  PDFPTG 68


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP I+GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 117 NFGNIDGDSAAAYRY 131
           NFG+IDGDSAAA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63
          +N+  V +  ++EE YLAY++S I  RA+PD RDG KPVHRRI++AM E
Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58


>gi|270650935|ref|ZP_06222222.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270317177|gb|EFA28783.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 157

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 28/120 (23%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--------------------------D 694
            +     +++ F+ + +  M R   GVR                               D
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLD 60

Query: 695 GGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
             I  V+   + +G    + +    Y +           R   G +  K   R+GK +++
Sbjct: 61  LNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 120



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653
           +DLN +  +V+  V      +L  +  G     + SE    +R  K  + +   E+   V
Sbjct: 59  LDLNID-KVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKV 117

Query: 654 VKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           V  T     D + ++ +   L+   + ++  + R  +GVR
Sbjct: 118 VAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVR 157


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL+  A FKKSAR VG+V+GK HP GD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTEARMTQVAE 141
           D  S AA RYTE+R+++ +E
Sbjct: 62  DPKSFAAMRYTESRLSKYSE 81


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          SN    +N    +L   +E+R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ L F
Sbjct: 2  SNQKQTDNELVYTLNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 69 GAAFKKS 75
           +++KKS
Sbjct: 62 NSSYKKS 68


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  
Sbjct: 1   LKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPK 60

Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
           S AA RYTEA+++  +EL+L  + +   +++
Sbjct: 61  SFAAMRYTEAKLSAYSELLLSELGQGTSEWQ 91


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 78  IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+IDGDSAAA RYTE R+
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|224532576|ref|ZP_03673199.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512519|gb|EEF82897.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 422

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 100/252 (39%), Gaps = 20/252 (7%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           +V  R  +E +      IV+ E+P+      LI  I + I    I  +  I D +AE+V 
Sbjct: 3   KVLVRAKIETID--EKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVA 59

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I L    R +    ++E ++  ++ +    +N+ +LS         +  ++K   AH ++
Sbjct: 60  IELSL-PRGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVY-TIKDLIKFHAAHLQK 117

Query: 371 VLFRRSSFRMQAIDRRV-----------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +L      +   I  ++           + +  LL      + I++II +E        S
Sbjct: 118 ILKMELELQKSKILEKIFSKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFS 177

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R  L E+ V+ +L + +R +   +  +   ++  L  E   + S+ ++           I
Sbjct: 178 REVLKED-VENLLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFI 233

Query: 480 REVKEIFSKSTD 491
             +   +SK   
Sbjct: 234 DLLLAKYSKEHQ 245


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|313611846|gb|EFR86317.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGWLG 731
             + I  M R   GVR    ++    +VI  ++ E     +    + Y +        L 
Sbjct: 1   PEENIRVMGRTAAGVRGIRLRED--DEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLR 58

Query: 732 KRGGVGSLVPKGFPRSGKFLS 752
            RGG+G        ++G  ++
Sbjct: 59  NRGGMGVKTVTITEKNGNLVA 79



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650
           I L  + +++   V +   K+LVV+ KG       S+     R G   KT         +
Sbjct: 18  IRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNL 77

Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
             +  VTG+  + ++  +  L+ F I+ + +  R   GV+L    +      + 
Sbjct: 78  VAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVA 131



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589
           IR +   +  +  +  +E D +         +++L+++  G     PA         G  
Sbjct: 5   IRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMG 64

Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSE 647
           ++ +     N ++V          L++++  G     E   +    R   G   +++  +
Sbjct: 65  VKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDED 124

Query: 648 EKMKLVVKV 656
           EK+  V KV
Sbjct: 125 EKVATVAKV 133



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
           ++  T  G   +++  ++++  +  +  D  V VV E          Q P  +R G GV+
Sbjct: 7   VMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVK 66

Query: 689 --LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               + K+G +  +      E L  +  +G                R  +G  + +   
Sbjct: 67  TVTITEKNGNLVAMKTVTGEEDLMLMTVSG--VLIRFEIETVSQTGRSAMGVKLIRLDE 123


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
               A+KKSARIVG+ IGK  PHGD S +D+LVR+AQ F  R PL+ GQGNFG IDGDSA
Sbjct: 4   TTKNAYKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGDSA 63

Query: 127 AAYRYTEARMTQVAELILQGVDEDAV 152
           AA RYTEARMT++AE  L+ +D+D V
Sbjct: 64  AATRYTEARMTRIAEEELRDLDKDTV 89


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
          +  YL YA+S I  RA+PD+RDG KPVHRR+++AM+ +G
Sbjct: 1  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEIA 72


>gi|297521997|ref|ZP_06940383.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 177

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 667 NRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725
             K++ F    +  M     GVR     +G     +     EG   + +    Y +    
Sbjct: 2   EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGA-ILTATQNGYGKRTAV 60

Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
                  R   G +  K   R+G  + +
Sbjct: 61  AEYPTKSRATKGVISIKVTERNGLVVGA 88



 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 570 GKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVE 627
           GK       ++   R  G     +  I L     +V+  V      +L  +  G      
Sbjct: 3   GKVVRFKESSV---RAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTA 59

Query: 628 ESEIIANTRKGKTFLKVSSEEK---MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683
            +E    +R  K  + +   E+   +   V+V   D + ++ +   L+   + +I  + R
Sbjct: 60  VAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGR 119

Query: 684 -GKGVRLQSYKDG----GISDVICFKICEGLTWIDSA 715
             +GV L    +     G+  V      E L  ID +
Sbjct: 120 NTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGS 156


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MS +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 62/82 (75%), Gaps = 1/82 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTEARMTQVAELI 143
           D  S AA RYTEA++++ AE++
Sbjct: 62  DPKSFAAMRYTEAKLSKFAEIL 83


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
             +++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEIA 72


>gi|23011688|ref|ZP_00051975.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 79

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573
           M+E+EPITV++S +GWIR+LK H  DLS + FK  D+LK++  + TT +ILLL+++GK +
Sbjct: 1   MVEREPITVILSEKGWIRALKGHVTDLSGVSFKGDDTLKVSFLSETTAKILLLASNGKVF 60

Query: 574 TLPAGNLLSGRGHGEAIQ 591
           TL A  L  GR     I+
Sbjct: 61  TLEASKLP-GRAPASVIR 77


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 9  SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68
          SN    +N    +L   +++R+  YA   I+ERA+PD+RDG KPV RRI+ AM+E+ L F
Sbjct: 2  SNQKQTDNELVYTLNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 69 GAAFKK 74
           +++KK
Sbjct: 62 NSSYKK 67


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131
           KSARIVG+V+GK HPHGD SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RY
Sbjct: 2   KSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
          +  E    + L   L +R+  Y+   I++RA+PD RDG KPV RRI+++M   G     A
Sbjct: 1  MQAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKA 60

Query: 72 FKKSAR 77
          F+KSA+
Sbjct: 61 FRKSAK 66


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           M+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|3282089|emb|CAA07512.1| topoisomerase II subunit A [Thermotoga neapolitana]
          Length = 139

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 585 GHGEAIQLLIDLNHNQDIVTA-FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643
           G   A    I L    ++V+   V     ++L V+ KG              R G     
Sbjct: 13  GRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRN 72

Query: 644 VSSEEK---MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698
           +S   K   +  V  V GD  + VV  N  ++   + +I  + R  KGV+L    D  IS
Sbjct: 73  ISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELGDDTIS 132

Query: 699 DVICFKI 705
            V   K 
Sbjct: 133 KVAVVKD 139



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI--CEGLTWIDSAGRSYNRSENDL 726
           ++ F +  +  M R   GV+    + G   +V+   +   E    +    + + +     
Sbjct: 1   IIRFPVSDVRRMGRNAAGVQAIKLQPG--DEVVSMDVVPSEEGEILTVTEKGFGKRTPVQ 58

Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752
           L  + KRGG G        ++G  ++
Sbjct: 59  LYRVQKRGGTGLRNISDVNKTGHVVA 84



 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTD-RILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +R +  ++  + A+  + GD +       + +  IL ++  G     P       +  G 
Sbjct: 9   VRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGT 68

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            ++ + D+N    +V         +++VV+  G    +  SEI    R  K    +   +
Sbjct: 69  GLRNISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELGD 128

Query: 649 KMKLVVKVTGD 659
                V V  D
Sbjct: 129 DTISKVAVVKD 139


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G 
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
             D  S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 52/72 (72%)

Query: 69  GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
              ++KSA+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 129 YRYTEARMTQVA 140
            RYTEAR++++A
Sbjct: 61  MRYTEARLSEMA 72


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 165 PVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGP 224
           P+V P+  P+LL  G+SGIAVGMAT +P  ++ E  EA  +  D   I+IE+L++YI  P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 225 DFPTG 229
            FP+G
Sbjct: 62  AFPSG 66


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|325067252|ref|ZP_08125925.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 183

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEI 631
            +P      G      ++ L+D+   + +V            +++ +++G    V+  + 
Sbjct: 31  EVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSADNPPIVLATAEGVIKRVKPGD- 89

Query: 632 IANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
                +    + +S  +++         D +A+V  + +LL F   ++    RG  G+  
Sbjct: 90  EPRNAESWEVISLSEGDRVVFAGTAADTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAG 149

Query: 690 QSYKDGGIS---DVICFKICEGLTWIDSAG 716
            S  +G        +  ++      +  AG
Sbjct: 150 ISLHEGARVIAGAAVPEELLAEAVVVTVAG 179


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y++LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
            D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNFG+
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF-G 119
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+  
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
             D  S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPH D S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G 
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151
             D  S AA RYTEA+++  +EL+L  + +  
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 54  HRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            RRI++AMSE+GL   A +KKSAR VG V+GK HPHGD + Y+++V +AQPF  RYP + 
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 114 GQGNFGNIDGDSAAAY 129
           GQ N+G+ D   + A 
Sbjct: 61  GQSNWGSADDPKSFAA 76


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|269219417|ref|ZP_06163271.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211152|gb|EEZ77492.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 241

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 565 LLSTDGKAYTLPAGNLL-----SGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVS 618
           ++++ G+A  L   ++           G  ++ L+ L   +  V    + ++    ++ +
Sbjct: 2   VVTSAGRAVRLDVLDVPVAPDAPSLAAGARLRELVSLAEGERAVGLIDLSEAAAPPVLAT 61

Query: 619 SKGNAFIVEESEIIANTRKGK---TFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFS 674
            +G    V           GK     + +   + +         D + +V  +  LL F 
Sbjct: 62  ERGKIKRVGAGH------PGKDSWELIGLEKGDSVIGCGHCADADQIVLVSSDAHLLRFD 115

Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711
              +    R G+GV       G  + VI   +  G   
Sbjct: 116 GSSVRPQGRAGRGVAGIRL--GAEAKVIALGVVPGDDV 151



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 28/191 (14%)

Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623
           +L +  GK   + AG+       G+    LI L     ++         ++++VSS  + 
Sbjct: 58  VLATERGKIKRVGAGH------PGKDSWELIGLEKGDSVIGCGHCADADQIVLVSSDAHL 111

Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGDHV-----AVVGENRKLL----- 671
              + S +    R G+    +    + K++    V GD V     A V  +R  L     
Sbjct: 112 LRFDGSSVRPQGRAGRGVAGIRLGAEAKVIALGVVPGDDVGGTLVATVSGSRDALEGTVA 171

Query: 672 ----IFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726
               +  +D+ P   RG  GVR Q +  G     +       L  + + G+     E D 
Sbjct: 172 GNAKVTPLDRFPAKGRGTGGVRAQRFLRGEDCLQLAAVGQAPLHAVGAGGQPIGLPETDE 231

Query: 727 LGWLGKRGGVG 737
                +R G G
Sbjct: 232 -----RRDGSG 237


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 42/52 (80%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           GK HPH D +VY+++VR+AQ F  RY L+ GQGNFG+IDGDSAAA RYTE R
Sbjct: 1   GKYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           +G D+   +KKSAR+VG+VIGK HPHGD++VYD++VR+AQPF  RY L+ GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 51/60 (85%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130
           A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP I GQGNFG+IDGD AAA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD+S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDS 125
           +  A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S
Sbjct: 1   NASAKFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYRYTEARMTQVAE 141
            AA RYTE+R+++ +E
Sbjct: 61  FAAMRYTESRLSKYSE 76


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 71  AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAY 129
            FKKSAR VG+V+GK HPHGD + Y+ +V +AQPF  RYPL+ GQGN+G   D  S AA 
Sbjct: 1   KFKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 60

Query: 130 RYTEARMTQVAELILQG 146
           RYTE+R+++ +EL+L  
Sbjct: 61  RYTESRLSKYSELLLSE 77


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 51/67 (76%)

Query: 57  IIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           I++AMSE+GLD  A  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RY L+ GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 117 NFGNIDG 123
           N+G  D 
Sbjct: 61  NWGAPDD 67


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query: 77  RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           R+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 137 TQVAE 141
           T +AE
Sbjct: 61  TPIAE 65


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query: 79  VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134
           VG+V+GK HPHGD+SVYD++VR+AQP+  RYP + GQGNFG++DGD  AA RYTEA
Sbjct: 1   VGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 56


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AM + G     +  KSAR V E +G  HPHGD S+Y +LVR+AQP+  RYPL+ GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 120 NIDG 123
           +   
Sbjct: 61  SPGN 64


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDS 125
           +  A FKKSAR VG+V+GK HPHGD + Y ++V +AQPF  RYPL+ GQGN+G   D  S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYRYTEARMTQ 138
            AA RYTE+R+++
Sbjct: 61  FAAMRYTESRLSK 73


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/76 (56%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL      KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   
Sbjct: 2   ELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD 61

Query: 122 DGDSAAAYRYTEARMT 137
           D  S AA RYTEA+++
Sbjct: 62  DPKSFAAMRYTEAKLS 77


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 -NIDGDSAAAYRYTE 133
              D  S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 55/77 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQGVDEDAV 152
           ++++A  +LQ +++  V
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y ++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
          +SL+   EE YL YA+  I +RA+P++ DG KPV RRI      + L   
Sbjct: 10 ISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRIYMQCQSLVLMLD 59


>gi|16923696|gb|AAL31544.1|AF435074_9 DNA gyrase A [Corynebacterium glutamicum]
          Length = 140

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS---SEEKMKLVVKV-TGDHVAVVGEN 667
             LLV +S G        +     R G   +         ++   + V   D +  +   
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSA 60

Query: 668 RKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
             ++   + QI   SR   GVRL + ++G     I   + +
Sbjct: 61  GGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVED 101



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753
            + +    Y +           RGG+G +  K  P+ G+ +S+
Sbjct: 3   LLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSA 45


>gi|229025029|ref|ZP_04181458.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
 gi|228736364|gb|EEL86930.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
          Length = 193

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 3/129 (2%)

Query: 622 NAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                E ++  +    +    + +  E+++  +    G   + +       LIF  D++ 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 60

Query: 680 EMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            +  R  GV+  + K+            E    I    R   +           R   G 
Sbjct: 61  PVGVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGL 120

Query: 739 LVPKGFPRS 747
           ++ K   R+
Sbjct: 121 VIFKELKRN 129



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN-LLSGRGHGEAIQ 591
           ++ +S    A++ K+ D +        T  I+L +    AY L      +S  G   A  
Sbjct: 12  VQRYSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHG--AYALIFHEDEVSPVGVRAAGV 69

Query: 592 LLIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS---- 646
             I+L  +  + +    +    +L++V+ +G    ++ SEI  +TR  +  +        
Sbjct: 70  KAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRN 129

Query: 647 EEKMKLVVKVTGDHVA 662
             ++  +  V  D + 
Sbjct: 130 PYRIVGIEIVRDDELI 145


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEMAGYLLQD 71


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 -NIDGDSAAAYRYTE 133
              D  S AA RYTE
Sbjct: 61  APDDPKSFAAMRYTE 75


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query: 96  DSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFR 155
                    F  RY L+ GQGNFG+IDGDSAAA RYTE RMT++A  +L  +++D VD+ 
Sbjct: 4   YDHCSYGSDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWE 63

Query: 156 DTYNEEDSE 164
           D Y+  +  
Sbjct: 64  DNYDGSERM 72


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124
           L   A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 SAAAYRYTEARMT 137
           S AA RYTEA+++
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|173000|gb|AAB59328.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 166

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 22/154 (14%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223
           EP  +    P +L NG  GI  G +T IP  N  EI +    L+++     E+L +    
Sbjct: 3   EPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMND-----EELEQMHPW 57

Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283
               TG I             +    + +  R  +E++  G   + +TE+P +   S + 
Sbjct: 58  FRGWTGTIE-----------EIEPLPYIIYGR--IEQI--GDNVLEITELPARTWTSTIK 102

Query: 284 EKIAELI--IAKRIPLLEDIRDESAEDVRIVLFP 315
           E +   +    K  P ++D+ ++  ++++ ++  
Sbjct: 103 EYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITL 136


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 49/72 (68%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+Y ++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
           + +M++ G  F   F+KSA+ VG ++G  HPHGD S+Y+++VRL+Q +  R  LI   GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 118 FGNIDGDSA 126
            G++DGD  
Sbjct: 61  NGSMDGDPP 69


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEMAGYLLQD 71


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
             +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F  RYP + GQGNFG+IDGD A
Sbjct: 1   SRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 59


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HP GD S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|104640687|gb|ABF73000.1| plastid DNA gyrase subunit A protein precursor [Karenia brevis]
          Length = 292

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR---GHGEAIQLLID-LNH 598
                GDSL      H  D++L  S DG+   + A  +   R     G A+  L+  L  
Sbjct: 73  FGMMPGDSLMNLYCCHDDDKLLAFSEDGRVLMMNALAVPPPRLISAQGSALSELLPALGE 132

Query: 599 NQDIVTAFV-----YDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEK 649
              +    V     +D      L++V+  G A  V   E+    R GK+   +++   ++
Sbjct: 133 GHKVTALVVMPDFNFDDYEDEFLVLVTGCGIAKKVLIKEL-GRLRPGKSLQCMRLDEGDE 191

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSI 675
           ++   +  G+  +    E   +L  S+
Sbjct: 192 LRWAHRARGNFALVCATEKGHVLRCSL 218


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 52/71 (73%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD+S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120
           MSE+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 121 IDGDSAAAY 129
            D   + A 
Sbjct: 61  PDNPKSFAA 69


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKS R VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S 
Sbjct: 1   ASAKFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 60

Query: 127 AAYRYTEARMTQ 138
           AA RYTE+R+++
Sbjct: 61  AAMRYTESRLSK 72


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 61  MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG- 119
           MSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G 
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 NIDGDSAAAYRYTE 133
             D  S AA RYTE
Sbjct: 61  PDDPKSFAAMRYTE 74


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           A+ VG ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 136 MTQVAELILQG 146
           ++++A  +LQ 
Sbjct: 61  LSEIAGYLLQD 71


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHG+ S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTE 133
           SAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE
Sbjct: 1   SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 60

Query: 134 ARMTQVAE 141
           +R+++ +E
Sbjct: 61  SRLSKYSE 68


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VY+++VR+AQ F  RY L+ GQGNFG+IDG +AAA RYTE RM +
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|229086163|ref|ZP_04218382.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
 gi|228697147|gb|EEL49913.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
          Length = 193

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 3/129 (2%)

Query: 622 NAFIVEESEI-IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIP 679
                E ++  +    +    + +  ++++  +    G   + +       LIF  +++ 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFVTDGTSDIVLATHGAYALIFGEEEVS 60

Query: 680 EMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738
            +  R  GV+  + K+            E    I    R   +           R   G 
Sbjct: 61  PVGIRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGL 120

Query: 739 LVPKGFPRS 747
           ++ K   R+
Sbjct: 121 VIFKELKRN 129



 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           ++ +S    A++ K+ D +        T   ++L+T G    +     +S  G   A   
Sbjct: 12  VQRYSRAFVAVNLKKDDEVVDIFVTDGTS-DIVLATHGAYALIFGEEEVSPVGIRAAGVK 70

Query: 593 LIDLNHNQDIVTAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS----E 647
            I+L  +  + +    +    +L++V+ +G    ++ SEI  +TR  +  +         
Sbjct: 71  AINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNP 130

Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQI-PEMSRGK 685
            ++  +  V  D +  +   +++    +++I P+M R K
Sbjct: 131 YRIVGIEIVRDDELVYMKTEKQI----VEEIDPKMFRNK 165


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 2   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 DGDSAAAYRYTE 133
           D  S AA RYTE
Sbjct: 62  DPKSFAAMRYTE 73


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NI 121
           E+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 DGDSAAAYRYTE 133
           D  S AA RYTE
Sbjct: 61  DPKSFAAMRYTE 72


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+V E++GK HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           KSAR VG+VIGK HPHGD + Y++LV +AQPF  RYPLI GQGNFG + D  S AA RYT
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYT 60

Query: 133 EARMTQVAELILQG 146
           E+++T +AE++L  
Sbjct: 61  ESKLTPIAEVLLGE 74


>gi|4218208|emb|CAA09753.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 717

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 52/294 (17%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGR----GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
            +Y+  +G  +   +      G         + +TE+P +       E++ E ++     
Sbjct: 2   PNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDK 61

Query: 297 L---LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG--RV 351
               + D ++   +     +               +  +  ++T    N  VL      +
Sbjct: 62  TPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCL 121

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSS------------------FRMQAIDRRVEIL--- 390
            +   +  ILKE+   R      R                    F ++ I  ++ I    
Sbjct: 122 KKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRS 181

Query: 391 -KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD---------------AILNL 434
            K L+   +        ++   + +         T+NQ D                ILN+
Sbjct: 182 KKDLIQMLVQRGYESDPVKAWKEAQEKAAEE-DETQNQHDDSSSDSGTPSGPDFNYILNM 240

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            L SL K +  ++  + D    E   +     S    W     ++    E   K
Sbjct: 241 SLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 289


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 141 ELILQGVDEDAV 152
             +L  +++  V
Sbjct: 61  GYLLADIEKKTV 72


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD+  Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDGDSAA 127
             D   + 
Sbjct: 61  APDDPKSF 68


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYP 60

Query: 111 LI 112
            I
Sbjct: 61  SI 62


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
           T+IP HN+ E+    LA ID+ +ISIE L+E+I GPDFPT  I +  R  I E+YR GRG
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAI-INGRRGIEEAYRTGRG 59

Query: 249 GFRVRAR 255
              +RAR
Sbjct: 60  KVYIRAR 66


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135
           AR+VGE++GK HPHGD S Y+++ R+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NID 122
           +GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDD 60

Query: 123 GDSAAAYRYTE 133
             S AA RYTE
Sbjct: 61  PKSFAAMRYTE 71


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 51/72 (70%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140
            ++G  HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR+++VA
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 141 ELILQGVDEDAV 152
             +L+ +++  V
Sbjct: 61  GYLLEDIEKKTV 72


>gi|227542700|ref|ZP_03972749.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181522|gb|EEI62494.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 79

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L LRL  L  LE  ++ SE   +L    ++  +L +  +    I  E+  VK  F  +  
Sbjct: 1   LELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDA-- 58

Query: 492 LGRRRTTFCEVSRADKATLQQAMIE 516
               R T    S+ D         E
Sbjct: 59  ----RRTEIVASQVDLTIADLITEE 79


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 51  KPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           KPVHRRI++AM          F KSARIVG VIG+ HPHGD +VYD+LVR+AQ F  RYP
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYP 60

Query: 111 LI 112
            I
Sbjct: 61  SI 62


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 60  AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           AMSE+GL   +  KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 120 NIDGDSAA 127
             D   + 
Sbjct: 61  APDDPKSF 68


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 43/54 (79%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138
           K HPHGD +VYD++VR+AQ F  RY LI GQGNFG++DG +AAA RYTE RM +
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|313640113|gb|EFS04735.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 140

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTG-DHVA 662
           V +   K+LVV+ KG       S+     R G   KT         +  +  VTG + + 
Sbjct: 3   VLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLM 62

Query: 663 VVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVIC 702
           ++  +  L+ F ID + +  R   GV+L    +      + 
Sbjct: 63  LMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVA 103



 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752
           + +    +    + Y +        L  RGG+G        ++G  ++
Sbjct: 4   LEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 51


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128
           ARIVG+V+GK HPHGD S+Y+++VR+AQPF  R PL+ G GNFG++DGD AAA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 86  LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
            HPHGD+S Y+++VR+AQ F  RYPLI G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 1   YHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 56


>gi|269967071|ref|ZP_06181139.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828330|gb|EEZ82596.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 205

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L  +G+    P       R  G     +  + L  N  +V+  V      +L V+  G 
Sbjct: 20  VLDENGQ----PEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGY 75

Query: 623 AFIVEESEIIANTR--KGKTFLKVSS--EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
                 SE     R  +G   +KVS      +  +  V GD + ++ +   L+   + ++
Sbjct: 76  GKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEV 135

Query: 679 PEMSR-GKGVRLQSYKDG 695
            ++ R  +GV L    + 
Sbjct: 136 SQVGRNTQGVTLIRTAED 153



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736
           +  M R   GVR     +      +     EG   +      Y +           RG  
Sbjct: 34  VRPMGRTASGVRGMKLAENDQVVSLIVPSHEGD-ILTVTENGYGKRTALSEYPTKGRGTQ 92

Query: 737 GSLVPKGFPRSGKFLSS 753
           G +  K   R+G  + +
Sbjct: 93  GVVSIKVSERNGPVVGA 109


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           G+LHPHGD SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E +
Sbjct: 1   GQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|294637121|ref|ZP_06715432.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
 gi|291089692|gb|EFE22253.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
          Length = 159

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEK-- 649
           I L  +  +V+  V      +L V+  G       +E    +R   G   +KV+      
Sbjct: 6   IKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTERNGRV 65

Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG----GISDVICFK 704
           +  V    GD + ++ +   L+   + ++  + R  +GV L    +     G+  V+   
Sbjct: 66  VGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPV 125

Query: 705 ICEGLTWIDSA 715
             E L  ID +
Sbjct: 126 DDEELDSIDGS 136



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
           GVR     D      +     EG   +      Y +           R   G +  K   
Sbjct: 2   GVRGIKLADDDRVVSLIVPHGEGA-ILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTE 60

Query: 746 RSGKFLSS 753
           R+G+ + +
Sbjct: 61  RNGRVVGA 68



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 638 GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695
           G   +K++ ++++  ++   G+  +  V +N      ++ + P  SR   GV      + 
Sbjct: 2   GVRGIKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTER 61

Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
               V   +I +G   +                 +  R   G ++ +   
Sbjct: 62  NGRVVGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAE 111


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 47  RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106
            DG KPV RRI+H + ++         K A + G+ +   HPHGD ++ D+LV +A    
Sbjct: 1   VDGLKPVQRRILHTLYKI---HDGKLHKVANVAGQTMA-YHPHGDAAIIDALVNMA---- 52

Query: 107 QRYPLISGQGNFGNIDGDSAA 127
            +   +  QGNFGNI     A
Sbjct: 53  NKGFFLDCQGNFGNIYTGDPA 73


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSA 126
             A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPLI GQGN+G   D  S 
Sbjct: 1   SSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSF 60

Query: 127 AAYR 130
           AA R
Sbjct: 61  AAMR 64


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +
Sbjct: 1   NFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYL 59


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 55  RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           RR+++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS+VR+AQPF  RY
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLRY 63


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +
Sbjct: 1   YFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYL 59


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 47/60 (78%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
           G+LHPHGD+SVYD++VRL+Q +  R+ L+   GN G+ID D  AA RYTEA+++Q++E +
Sbjct: 1   GQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|156347131|ref|XP_001621647.1| hypothetical protein NEMVEDRAFT_v1g144180 [Nematostella vectensis]
 gi|156207799|gb|EDO29547.1| predicted protein [Nematostella vectensis]
          Length = 170

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L E++ K VS    + +  + ++ +   ER+IP L DG KP  R+++    +        
Sbjct: 91  LYEKDTKRVSYCDFVNKELILFSNTD-NERSIPSLVDGLKPGQRKVMFTCFKRNDKREVK 149

Query: 72  FKKSARIVGEVIGKLHPHG 90
             + A  + E+    H   
Sbjct: 150 VAQLAGSIAELSAYHHGEV 168


>gi|7025462|gb|AAF35892.1| topoisomerase II [Mytilus edulis]
          Length = 226

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 12  LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71
           L  +  K +S    +    + ++ +   ER+IP L DG KP  R++I    +  L     
Sbjct: 140 LYGKETKHISYNEFINRELVLFS-NMDNERSIPSLVDGLKPGQRKVIFTCIKRNLIRELK 198

Query: 72  FKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
             + A  V E     + HG+QS+  +++ L
Sbjct: 199 VAQLAGSVAE--QSSYHHGEQSLMSTIINL 226


>gi|242095826|ref|XP_002438403.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
 gi|241916626|gb|EER89770.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
          Length = 371

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 111/365 (30%), Gaps = 31/365 (8%)

Query: 168 FPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFP 227
             +  P +L NG  GI  G +T IP +N ++I      L      ++E++  +       
Sbjct: 1   VFANLPMILVNGAEGIGTGWSTKIPCYNPKDIVHNLK-LKIQGSETLEEMKPWFRHFHGE 59

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
                  ++           G  +V               + ++E+P ++       K+ 
Sbjct: 60  VSVKNKTTKTKKSGVTYTASGIIKVV----------DKTTLKISELPVKISMENYERKLK 109

Query: 288 ELI--IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
             +    K I   E  R  +  ++ I L   + +L     ++         +    NM++
Sbjct: 110 TFMDGEDKFIKSYEKKRGGNDVEIMIHLHENSENLVQANEVDLQRKFELRTSMGTSNMHL 169

Query: 346 LS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           L   G + +    + I+        E+  R        +     +  G +  +    E +
Sbjct: 170 LDSNGIIKKNDSPEQIIVNMQQKLVEMAGRDLKMAQNKVRFIKAVRTGEIKLFDMDKEGL 229

Query: 405 AI------IRNEDKPKPVMVSRFSLTENQ----VDAILNLRLRSLRKLEEYQIKSELDNL 454
                       ++ KP   ++      +     D +L + + +   L   ++++E ++ 
Sbjct: 230 HTKLREMQFEEFEQAKPSWENQDGAKAQEIIRGYDYLLFMPIVNFT-LMVEELEAECEHQ 288

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                ++       K+ W     ++   +E      D G        V         +  
Sbjct: 289 KKNISELKK--TKPKELW---LKDLNAFEEEL-DHKDDGLSDAVHEAVRDPAFMNTTELE 342

Query: 515 IEKEP 519
                
Sbjct: 343 NPSTE 347


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 63  EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           E+GL+  A FKKSAR VG+V+GK HPHGD + Y+++V +A PF  RYPL+ GQGN+G
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 38/50 (76%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
           +G  HPHG+ S+Y++LVR+AQP+  RYPL++GQGNFG+   +  AA RY 
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRYC 50


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDS 125
           +  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDS 125
           +  A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +
Sbjct: 1   NFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYL 59


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 42/59 (71%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI 143
             HPHGD S+YD++VR++Q +  R  L+   GN G++DGD  AA RYTEAR++++A  +
Sbjct: 1   NFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYL 59


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDS 125
           +  A FKKSAR VG+V+GK HPHGD + Y ++V + QPF  RYPL+ GQGN+G   D  S
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 AAAYR 130
            AA R
Sbjct: 61  FAAMR 65


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118
           KSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136
           +V G  HP+GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA++
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 56


>gi|37542711|gb|AAL47189.1| gyrase A [Mycobacterium marinum]
          Length = 122

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 559 TTDRILLLSTDGKAYTLPAGNLL-----SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
           T D  + L+T G+ Y     N       +    GE +           ++    Y+    
Sbjct: 1   THD-WICLTTQGRVYRARPTNCPRRTHRAWAARGEPVA-FQPEERIAQVIQIKSYEDAPY 58

Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL-LI 672
           L++    G   I + ++  +N   G   +K+  E+++      + +            L 
Sbjct: 59  LVLAPRTGGEEI-QVTDFDSNRSGGIVGIKLRGEDELVGAGMCSSEEDLWWSRRTDSRLR 117

Query: 673 FSIDQ 677
           FS  +
Sbjct: 118 FSATE 122


>gi|213863328|ref|ZP_03386583.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 640 TFLKVSSEEKMKLVVKVTGDHVAV--VGENRKLLIFSIDQIPEMSRGKGVRLQSYK---- 693
           T + +     +   + +  +H  +  + +  ++L+F +D +P++S+GKG ++ +      
Sbjct: 2   TLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEA 61

Query: 694 ---DGGISDVICFKICEGL 709
              D G++ +        L
Sbjct: 62  AKGDDGLAHLYVLPPQSTL 80


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 84  GKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMTQVAEL 142
           GK HPHGD++ Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYTE+R+++ +EL
Sbjct: 1   GKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL 60

Query: 143 ILQG 146
           +L  
Sbjct: 61  LLSE 64


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
             +G D+  A+KKSAR+VG+VIGK HPHGD +VY+++VR+AQPF  RY L+ 
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVD 52


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 40/47 (85%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY+++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYR 130
           KSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA R
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 58


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 75  SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121
           SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQGNFG++
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
             +G D+  A+KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ 
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVD 52


>gi|218677864|ref|ZP_03525761.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 241

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 50/172 (29%), Gaps = 60/172 (34%)

Query: 641 FLKVSS-EEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEM-SRGK-GVRLQSYKDG- 695
            +K+    +++  V   T  D V +     + + FS+D +     R   GVR  +  +G 
Sbjct: 1   AMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGD 60

Query: 696 --------------------------------GISDVICFKICEGLT------------- 710
                                           G+ +     + E +T             
Sbjct: 61  RIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVL 120

Query: 711 ------WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS---GKFLSS 753
                  +  + + + +  +     +  RGG G        ++   G+ +++
Sbjct: 121 RNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRAT-DTSKTGEIGELVAA 171



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EEKMKLVVKVTGDHVAVV 664
              +L VS KG        +   + R GK      +       E +       GD + +V
Sbjct: 124 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 183

Query: 665 GENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
            +  +L+   +  I   SR  KGV +  ++KD  +  V
Sbjct: 184 SDGGQLIRVPVGGIRIASRATKGVTIFSTHKDEKVVSV 221


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 81  EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYTEARMT 137
           +V+GK HPH D + Y+++V +AQPF  RYPLI GQGN+G   D  S AA RYTEA+++
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLS 58


>gi|315273175|ref|ZP_07869218.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616198|gb|EFR89280.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 42

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGF 50
           + +  ++L   +   +L YA+S I  RA+PD+RDG 
Sbjct: 6  NQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGL 42


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 43/59 (72%)

Query: 88  PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146
           PHGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE +L+ 
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRD 59


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 66  LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117
             +   F+KSA+ VG+VIG+ HPHGD SVYD++VRL+Q +  R+ LI   GN
Sbjct: 1   NTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|309807643|ref|ZP_07701585.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169109|gb|EFO71185.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 76

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%)

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +S TE Q +AI+ L+L  L   +  Q+ SE   L         ++N+  +    I  E  
Sbjct: 4   YSFTEKQAEAIVYLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFE 63

Query: 481 EVKEIFSKSTD 491
           +VK+   +  +
Sbjct: 64  DVKKSLDQHVE 74


>gi|294463058|gb|ADE77067.1| unknown [Picea sitchensis]
          Length = 183

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 42/195 (21%)

Query: 521 TVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580
            + +S  G +R++   S  L ++  +  D +                            +
Sbjct: 1   MLTLSLCGMLRAIGRKSRGLISMRLRGEDKVASM-----------------------DIV 37

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKG 638
            +         LL   +  + I   +       LL+VS  G    V  S        R G
Sbjct: 38  PAAVQQELKNALLSSKSQGKTITAPW-------LLLVSESGYGKRVPLSSFRITPLKRVG 90

Query: 639 KTFLKVSSEEKMKLVVKV---------TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688
               K+  E+++  +  V         + + V +V  +  +    +  I   SR  KGVR
Sbjct: 91  LIGYKLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVR 150

Query: 689 LQSYKDGGISDVICF 703
           L   + GG    +  
Sbjct: 151 LMRLEHGGKIQSVSV 165


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           HGD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           KKSAR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQGN+G
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 47


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 8   NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67
              T +++    +S+   + +  + ++++    R+IP++ DGFKP  R+I+    +    
Sbjct: 631 EQGTFLDQRPSEISISDFINKELILFSMADNF-RSIPNVLDGFKPGQRKILFTCFKKIFI 689

Query: 68  FGAAFK 73
               ++
Sbjct: 690 RKLKYQ 695


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 89  HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           HGD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY ++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|167949302|ref|ZP_02536376.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 73

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
               K GD    A    +    + L + G++Y LPA  L S R  GE +   +       
Sbjct: 7   GSATKAGDHYLAAAQLRSNQAAVFLDSSGRSYALPAHTLPSARSQGEPLTGRLAPPAGDQ 66

Query: 602 IV 603
           ++
Sbjct: 67  LL 68


>gi|309800472|ref|ZP_07694627.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
 gi|308115891|gb|EFO53412.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
          Length = 144

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689
           ++    G   + +   + +     +T  D V ++ E          + P   R GKG++ 
Sbjct: 1   MSRIATGVKGVNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKT 60

Query: 690 QSY--KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745
            +   K+G ++ ++  K  E L  I   G       N        R  +G  V +   
Sbjct: 61  ANVTEKNGPLAGLLTVKGDEDLMIITDTG--VMIRTNVANISQTGRSTMGVKVMRLDQ 116



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 681 MSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739
           MSR   GV+  + ++G  + V    I +    +    + Y +           R G G  
Sbjct: 1   MSRIATGVKGVNLREGD-AVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMK 59

Query: 740 VPKGFPRSGKFLS 752
                 ++G    
Sbjct: 60  TANVTEKNGPLAG 72



 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 5/134 (3%)

Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592
           +   +  +  ++ +EGD++  A      D +L+++  G      A    +    G+ ++ 
Sbjct: 1   MSRIATGVKGVNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKT 60

Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKM 650
                 N  +           L++++  G       + I    R   G   +++  + K+
Sbjct: 61  ANVTEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKI 120

Query: 651 K---LVVKVTGDHV 661
                V     + V
Sbjct: 121 VTFTSVAAAEKEEV 134


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 36/44 (81%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VY ++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|167949303|ref|ZP_02536377.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 79

 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           +   L S ++    I  EI    E F        RR+   E + A+ A  +  +   EP+
Sbjct: 10  LQKTLGSKQRLRTLIRKEIEADAERFGDE-----RRSPIVERAAAE-ALSETDLSPSEPV 63

Query: 521 TVVISNRGWIR 531
           TVV+S +GW+R
Sbjct: 64  TVVLSEKGWVR 74


>gi|167946760|ref|ZP_02533834.1| DNA gyrase, A subunit [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 73

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +  LE+ +I  E + LL +   +  +L+S  +    I  E+  ++E ++       RRT 
Sbjct: 1   MTGLEQDKIIKEYEELLEKIANLLDILSSSFRLMEVIRDELLAIREQYNDP-----RRTQ 55

Query: 499 FCE 501
             +
Sbjct: 56  IIQ 58


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D  AA RYTEA+++ +AE
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|332141549|ref|YP_004427287.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551571|gb|AEA98289.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 80

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           K RLIEKIAEL+  KRI  +  +RDES +D   ++    R+   ++L+  ++ 
Sbjct: 19  KHRLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVKRNESAEVLLNHLYA 71


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/43 (69%), Positives = 36/43 (83%)

Query: 74  KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +SARIVG+VIGK HPHGD +VYD++VR+AQ F  RY LI GQG
Sbjct: 1   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 85  KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGDSAAAYRYT 132
           K HPHGD + Y+++V +AQPF  RYPL+ GQGN+G   D  S AA RYT
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 49


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 95  YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141
           Y ++VR+AQ F  RYPL  G GNFG+ DGD AAA RYTEAR+T +AE
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAE 47


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRY 109
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  RY
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRY 52


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 68  FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           +   F+KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI   G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR+VG+VIGK HPHGD +VYD++VR+AQPF  RY L+ GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|224532517|ref|ZP_03673142.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512589|gb|EEF82965.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---- 649
           + L      V          LL+VS  G    +  S+I    R    +      +K    
Sbjct: 1   MKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGS 60

Query: 650 -MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700
            +  +     D + +V +  K L     ++ E  +  +G+++    +  +  V
Sbjct: 61  VVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSV 113


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+V+GK HPHGD S+YD++VR+AQ F  RYPL+ GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VY+++VRLAQPF  RY L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y SLVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD+LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 58  IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYP 110
           ++AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VY S VR+AQPF  R  
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRLH 53


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YDSLVR+AQP+  RYPL+ GQGNFG+   D  
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 36/44 (81%)

Query: 73  KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQG 116
           ++SARIVG+VIGK HPHGD +VYD +VR+AQ F  RY LI GQG
Sbjct: 1   QESARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|20142122|dbj|BAB88924.1| gyrase A [Bacillus cereus]
          Length = 50

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           ++ HR  V+ RR++ R+     R+ +++GLL+A ++IDE+I IIR  D  
Sbjct: 1   YVDHRLTVVRRRTAHRLGKRQDRLHLVEGLLLALVDIDEVIEIIRTSDDA 50


>gi|262203836|ref|YP_003275044.1| hypothetical protein Gbro_3977 [Gordonia bronchialis DSM 43247]
 gi|262087183|gb|ACY23151.1| hypothetical protein Gbro_3977 [Gordonia bronchialis DSM 43247]
          Length = 218

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLR 435
            +     R +I   LL A     E++  I    N D+    +V     ++    AIL+++
Sbjct: 3   DLDQATTRRDIADALLTALERRHEVLDAIVDAENHDEAVAAIVDLLGKSQLGARAILDMK 62

Query: 436 LRSLRKLEEYQIKSELDNLL 455
           L  L K E  + ++ELD+L 
Sbjct: 63  LDQLTKDERRKNQAELDDLN 82


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YD LVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR V E +G  HPHGD S+YDSLVR+AQP+  RYPL+ GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|242095824|ref|XP_002438402.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
 gi|241916625|gb|EER89769.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
          Length = 396

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 62  SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF--VQRYPLISGQGNFG 119
                       + A  V E     H    +++ +++VR+AQ F       L+   G FG
Sbjct: 290 WIYNFLHNCKVAQFAAFVAECSAYHHGK--ENLSNTIVRMAQDFVGSNNINLLRPNGQFG 347

Query: 120 NI--DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVV 167
                G  AA+ RY    ++ +   I    D+  +D+  + + +  EP  
Sbjct: 348 TRLEGGKDAASARYIFTELSSITRRIFNESDDILLDYL-SEDGQSIEPSW 396


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 17  VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65
            K ++    + +  + ++ S   ER+IP L DG KP  R+++    +  
Sbjct: 708 TKHLTYNDFINKELILFSNSD-NERSIPSLVDGLKPGQRKVLFTCFKKK 755


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 117 NFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSK 171
           NFG+IDGD AAA RYTEAR+T  A  +L+ +D+D VD    Y+E   EPVVFPSK
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|255540167|ref|XP_002511148.1| palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
 gi|223550263|gb|EEF51750.1| palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
          Length = 392

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 23/234 (9%)

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           ++ ++G +G   G    +    +  +       +         ++E     D    G   
Sbjct: 152 HVTSSGLAGDGFGATREMSLRKLIWVVTRIHIQVQRYSC-WGDVVEIDTWVDGA--GKNG 208

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELI 290
             R+ I+  Y       R  + W +           ++++P QV++        +IA   
Sbjct: 209 MRRDWIIRDYNTKEIITRATSTWVI----MNRETRKLSKMPEQVRQELVPFYTNRIAIAK 264

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN-------- 342
               +  ++ + DE+AE +R  L P+   +D +  + ++  +  +    P+N        
Sbjct: 265 ENNDVEKIDKLTDETAERIRSGLAPRWSDMDANQHVNNVKYIGWILESVPINVLEDYNLT 324

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR-----SSFRMQAIDRRVEILK 391
              L   R  +   L   L     H       R      +  ++    + EI++
Sbjct: 325 SMTLEYRRECRQSNLLESLTSTTEHSNNNSCNRKAHLEYTHLLRMQADKAEIVR 378


>gi|147903473|ref|NP_001082516.1| similar to PTPRF interacting protein, binding protein 1 (liprin
           beta 1) [Xenopus laevis]
 gi|50418198|gb|AAH77745.1| LOC398525 protein [Xenopus laevis]
          Length = 970

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 15/248 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+  E +  L + +  F L ++VL+     Q   +  +      HR ++         Q 
Sbjct: 100 DICQERLARLENDKESFVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLN-DTEEMLQQE 158

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           +  R  +    L     I  +   + + +K +     R+  TE  V     +    LR  
Sbjct: 159 LLSRTSLESQKLDLMAEISNLKLKLVSVEKDRKEFEERYKDTEGLVQ---EMNELRLRVS 215

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD--LGRRRTTFC 500
           E    +S+ +  +   +   SLL    +        ++E  E   + TD   G  R    
Sbjct: 216 EMENERSQYEKKMKSNKDELSLLKEQLEHKEVDIKTLKESVERPPEVTDAVAGSERDVEV 275

Query: 501 EVSRADKATLQQAMIEKEPITVVISNR-GWIRSLKSHSVDLSALHFKE---GDSLKI--- 553
           +  +    +L  A  EKE     +       + ++   V       KE    DS+     
Sbjct: 276 QKMKKAMESLMAANEEKEQKIEELRQSLSRYKKVQDMVVLAQGKKGKEVESDDSVISGSN 335

Query: 554 --ALHAHT 559
                 +T
Sbjct: 336 SLVFDGNT 343


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           ARIVG+VIGK HPHGD +VYD+LVR+AQ F  R  L+ GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 32/40 (80%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           AR VG+V+GK HPHGD + Y+++V +AQPF  RYPL+ GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 40/49 (81%)

Query: 59  HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107
           +AM+ +G D+  A+KKSAR+VG+VIGK HPHGD +VYDS VR+AQPF  
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPFSL 49


>gi|167949299|ref|ZP_02536373.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 41

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
             R      +DL  + G+RG  G+ +P+GF R  + 
Sbjct: 3   GKRHITLKSSDLDSYQGERGRRGNKLPRGFQRVDRI 38


>gi|218780853|ref|YP_002432171.1| hypothetical protein Dalk_3013 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762237|gb|ACL04703.1| hypothetical protein Dalk_3013 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 407

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 106/332 (31%), Gaps = 24/332 (7%)

Query: 263 RGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
           +G     + EI       ++RL  K+  L+  K +     +RD   +          R+ 
Sbjct: 64  KGKSLYEIHEILIGSCENQNRLSRKVENLLNKKFLKEAAPLRDLDEKAFMDHWESAFRTG 123

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK-----EWLAHRREVLFRR 375
             + ++                 ++     +          +       +  +   + + 
Sbjct: 124 SYEAVL--WAAAERQVLSAKNMAHIFGAVHMDMHQTAQNAAQLAKRLSTVEEQLAGVRKL 181

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--PKPVMVSRFSLTENQVDAILN 433
               ++      +    L      ++  I+ +  ED   P+   V R  L E +  A+ N
Sbjct: 182 HRDEVKKGKALSKENSDLAQKCTALESKISSVNEEDAFIPEKGQVERAVLLEEENAALSN 241

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            RL  + K E  Q  + L +L A+ E++   L++ ++   Q   + R++   F +     
Sbjct: 242 -RLARMEK-ELEQKDARLASLEAQSEELQKELSAREEGKEQFKVQARKMINDFMQMNRCD 299

Query: 494 R-------RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
                    R     V    K       + ++   +   + G+I+      V       +
Sbjct: 300 DSCPSFNLCRKRILLVGGITKMEALYRQVVEKNGGIFEYHDGYIK----GGVRDLENRLR 355

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578
             D +   ++ ++     ++   GK +  P  
Sbjct: 356 RADVVLCPVNCNSHGACTMVKNLGKKHKKPVH 387


>gi|145542971|ref|XP_001457172.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424987|emb|CAK89775.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1155

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 95/259 (36%), Gaps = 22/259 (8%)

Query: 284  EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
            E + ++I    I   ++ +++  E+  IVL      +    + E +      E +   + 
Sbjct: 779  ENLDKIINE--IKSSQEKKNQQLEENLIVLEQIQNDI---KIKEKLIKDIQNEIQMKQDN 833

Query: 344  NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            +        +       L+  LAH++           Q +++ +       I    + E 
Sbjct: 834  HA-------KQSLQKDELENTLAHQQN-ELNIIKQDQQKLEQTLLQWVDFKIENHKLIEQ 885

Query: 404  IAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
               I     +++ K   + R      Q   + + + + L   +E ++  E   +  EK+ 
Sbjct: 886  QKQIEARFLDEEKKECNIKRQITILEQ--KLNDFQQQKLTIYKETELFEEQKEIRNEKDM 943

Query: 461  IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            +  +LN  ++Q ++I  ++R +K++F   + +  +  +  E            + +KE  
Sbjct: 944  LLKVLNDLQKQIDKI-DKLRSIKQLFPNVSAIQTKEKSKLESELKITIDSDLDLKQKE-- 1000

Query: 521  TVVISNRGWIRSLKSHSVD 539
             +  +   +   LK    +
Sbjct: 1001 -IEETKSAYQEQLKKQKFE 1018


>gi|49296|emb|CAA78157.1| DNA Gyrase subunit A [Borrelia burgdorferi]
          Length = 96

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             +  + +L +  +  N         +   +     G  R T          T    +++
Sbjct: 2   LIKDYEDILLNPVRIINIYK------RRTINLGLKFGDERRTKIIYDEEVLKTSMSDLMQ 55

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           KE I V+++ +G+++ L  +   L     K
Sbjct: 56  KENIVVMLTKKGFLKRLSQNEYKLQGTGGK 85


>gi|27924434|gb|AAH45033.1| LOC398525 protein [Xenopus laevis]
          Length = 551

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 15/248 (6%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D+  E +  L + +  F L ++VL+     Q   +  +      HR ++         Q 
Sbjct: 100 DICQERLARLENDKESFVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKLN-DTEEMLQQE 158

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           +  R  +    L     I  +   + + +K +     R+  TE  V     +    LR  
Sbjct: 159 LLSRTSLESQKLDLMAEISNLKLKLVSVEKDRKEFEERYKDTEGLVQ---EMNELRLRVS 215

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD--LGRRRTTFC 500
           E    +S+ +  +   +   SLL    +        ++E  E   + TD   G  R    
Sbjct: 216 EMENERSQYEKKMKSNKDELSLLKEQLEHKEVDIKTLKESVERPPEVTDAVAGSERDVEV 275

Query: 501 EVSRADKATLQQAMIEKEPITVVISNR-GWIRSLKSHSVDLSALHFKE---GDSLKI--- 553
           +  +    +L  A  EKE     +       + ++   V       KE    DS+     
Sbjct: 276 QKMKKAMESLMAANEEKEQKIEELRQSLSRYKKVQDMVVLAQGKKGKEVESDDSVISGSN 335

Query: 554 --ALHAHT 559
                 +T
Sbjct: 336 SLVFDGNT 343


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 90  GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137
           GD SVY+++VRL+Q +  R+ LI   GN G+ID D AA  RYTEA+++
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPAA-MRYTEAKLS 47


>gi|111021648|ref|YP_704620.1| hypothetical protein RHA1_ro04676 [Rhodococcus jostii RHA1]
 gi|110821178|gb|ABG96462.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 221

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLR 437
             I  R E+   LL A     E++  I + +     + +   L   +E   +A+LNL  R
Sbjct: 7   DRIHDRRELTAVLLRALEQRHEVLDAIVDSEDHAEALTTVAGLLDTSEAYAEAVLNLTFR 66

Query: 438 SLRKLEEYQIKSELDNLLAEKEK 460
            L K+E  +I++EL +L A  E 
Sbjct: 67  RLTKVERLRIQTELKDLDATLEW 89


>gi|224046687|ref|XP_002199386.1| PREDICTED: WD repeat domain 67 [Taeniopygia guttata]
          Length = 1045

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 67/206 (32%), Gaps = 8/206 (3%)

Query: 319 SLDPDLLMESIFMLSDMET-RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
            + P  +++    L+  +   F      +   +  +   +     E+L  R+      + 
Sbjct: 656 DIHPQHMLDDFTPLTKGQYPVFNKYPVFIVNDQAQKWEKIRQDEIEYLRERQLAHESEAK 715

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA----ILN 433
            + Q  +                +E    I  E++       R ++ + ++ A    +L+
Sbjct: 716 AQEQKAEDEA--WYRKQKLLREAEEQRQKILLEEEKLAEQSQRLAVVKRELKAKELQLLD 773

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
           +  R     ++ Q++ EL  L  E  +   L+ + +    ++  E+   +   +      
Sbjct: 774 VSRRCFLNYQQDQLQMELKRLDDEIAR-KHLIKNQEAVTKEMKDEVEAHQRKVALKGVQR 832

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEP 519
                  E+ +A     +     ++ 
Sbjct: 833 LIEIDKEEIQKAHTVAEENLAKAEQK 858


>gi|301780568|ref|XP_002925701.1| PREDICTED: hypothetical protein LOC100480267 [Ailuropoda melanoleuca]
          Length = 1343

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 78/213 (36%), Gaps = 16/213 (7%)

Query: 284  EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
            +++ +L+    I +++++  +   ++ +V+  K++      L   ++    M+  F ++ 
Sbjct: 806  QQLQKLLENLEIHMIQEVLRKVNREIALVVSEKSKEQC--TLPTDLWKHHVMKENFSVSR 863

Query: 344  NVLSMGRVPQVMPLDGILKEWLAHRRE------------VLFRRSSFRMQAIDRRVEILK 391
              +    + ++M         +  R++            V+ R  S           +L+
Sbjct: 864  PQIVEKFIQRLMESYQDGGLEITFRKDHLEACLLSLGCDVMARERSNFESYSMCYEHVLE 923

Query: 392  GLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                     ++ + IIR   D P+        L+   +  I  LR   L  LEE  +   
Sbjct: 924  HARQKLCQKEQELDIIRRGSDPPEDNAGQVAELSHTMIMEITALR-ARLTDLEEENLNLH 982

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                   +E+ ++L+ +       I  ++ E +
Sbjct: 983  KQIRKEVQEEYEALVQALFMACLHIKEKLDENQ 1015


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183
           +L  +D++ VDF   Y+  + EP V P++ PNLL NG++GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|75992958|gb|ABA33682.1| GyrA-like protein [Haemophilus parasuis]
          Length = 52

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 524 ISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           +S  G+++          +      SA   KE D ++  L A+T D IL L
Sbjct: 2   LSLAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCL 52


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG-PDFPTGGIIVES 235
           MAT+IP HN+ E+     ALI NPE ++++LLEY+   PDFPTGG I+ +
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIMGN 50


>gi|73973983|ref|XP_532255.2| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle,
           perinatal [Canis familiaris]
          Length = 1083

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 18/233 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+    I +++++  +   ++ +V+  K++      L   ++    M+  F ++ 
Sbjct: 541 QQLQKLLENLEIHMIQEVLRKVNREIALVVSEKSKERC--TLPTDLWKHHVMKEDFSVSR 598

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRRE------------VLFRRSSFRMQAIDRRVEILK 391
             +    + ++M         +  R++            V+ R  S           +L+
Sbjct: 599 PQIVEKFIQRLMENYQDGGLEITFRKDHLEACLLSLGCDVMARERSNFESYSMCYEHVLE 658

Query: 392 GLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                    ++ + IIR   D P+        L+ N +  I  LR   L  LEE  +  +
Sbjct: 659 HARQKLCQKEQELDIIRRGSDPPEDGAGQVAELSHNMIMEITALR-ARLTDLEEENLNLK 717

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE--IFSKSTDLGRRRTTFCE 501
                  +E+ ++L+ +       I  ++ E +   I      +G  RT   +
Sbjct: 718 HQIRKEVQEEYEALVQALFVTCLHIKEKLDENQINLIQKVYELIGEVRTEGID 770


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 32/51 (62%)

Query: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114
           +G D+  A+KKSAR+VG+VIGK HPHGD +V          F  RY L+ G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAAFSLRYMLVDG 52


>gi|159040961|ref|YP_001540213.1| chromosome segregation ATPase-like protein [Caldivirga
           maquilingensis IC-167]
 gi|157919796|gb|ABW01223.1| Chromosome segregation ATPase-like protein [Caldivirga
           maquilingensis IC-167]
          Length = 465

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 23/227 (10%)

Query: 282 LIEKIAELIIAK-----RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           L  +I EL   +     R   L+   +E +     +   K R      LM  +       
Sbjct: 183 LESRIIELANKESELKVREESLKRREEELSRIEATLEEEKRRVDAASKLMNDL------- 235

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           +    NM  +    V ++   +  LK+     RE   R     ++ ++ R+++    + A
Sbjct: 236 SSLSNNMGSVISELVNRLSNYEKTLKDLQE--REARLREQEINLKNLEARLQLEAARIEA 293

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL--EEYQIKSELDNL 454
                + +     E K +   +   +  E+Q+ A    R   + KL  E  +   EL  L
Sbjct: 294 NSERLKELEKKEEEIKAR---LQELANRESQIKA----REEQVNKLAAEWERKAKELSEL 346

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            A+       LN  +++   I  E+   +       +    R T  E
Sbjct: 347 EAKLNNYRDELNKREKELESIKNELDARRRELEGKLEPLVTRLTEEE 393


>gi|226364185|ref|YP_002781967.1| hypothetical protein ROP_47750 [Rhodococcus opacus B4]
 gi|226242674|dbj|BAH53022.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 221

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLR 437
             I  R E+   LL A      ++  I + +     + +   L   TE   +A+LNL  R
Sbjct: 7   DRIHDRRELTAVLLRALEQRHAVLDAIVDSEDHAEALTTVAGLLDTTEAYAEAVLNLTFR 66

Query: 438 SLRKLEEYQIKSELDNLLAEKEK 460
            L K+E  +I++EL +L A  E 
Sbjct: 67  RLTKVERLRIQTELKDLDATLEW 89


>gi|300361932|ref|ZP_07058109.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03]
 gi|300354551|gb|EFJ70422.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03]
          Length = 1186

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 26/270 (9%)

Query: 290 IIAKRIPLLEDIRDE---SAEDVRIVLFPKNRSLDPDLLMESI-FMLSDMETRFPLNMNV 345
           +    + L+ D RD    S E   IV     R+ + D L+      L D+ T F  +   
Sbjct: 75  MNHAEVELIFDNRDHQLASDEKEVIVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMS 134

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +     +D IL      RR +         +     +   +    A   +D+  A
Sbjct: 135 SDSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKETALKQLDKTNA 186

Query: 406 -IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLA 456
            +IR  D  K +      L E    A         L+ +L+ L  LE   +  E  ++  
Sbjct: 187 NLIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKDVAK 246

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           +      +L+    +  Q   ++ E ++  +K       +           A L   +  
Sbjct: 247 KANANQEILDKLDNEVKQSQADLEEKRKQSNKRHAEKDEKQQELLSLTQKLAALNTDLQM 306

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +      S    + + K ++     L  +
Sbjct: 307 HQQ-----SREYDVATQKEYNAQAEELKER 331


>gi|242032529|ref|XP_002463659.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
 gi|241917513|gb|EER90657.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
          Length = 188

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKV---------TGDHVA 662
           LL V+  G    V  +    +     G    K+  + ++  V            + + V 
Sbjct: 76  LLFVAENGIGKRVPLNAFRLLNFNAVGLQGYKLPEDCRLAAVFIAGLSLTEDGESDEQVV 135

Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696
           +V ++  +    +  I   SR  +GV L   +  G
Sbjct: 136 LVSQSGTVNRIKVKDISIQSRHSRGVILMRLEHAG 170


>gi|213026408|ref|ZP_03340855.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 52

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
              KA  +  M+  EP+T+V+S  GW+RS K H +D   L++K GDS 
Sbjct: 5   EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 52


>gi|270004773|gb|EFA01221.1| hypothetical protein TcasGA2_TC010548 [Tribolium castaneum]
          Length = 405

 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 85/264 (32%), Gaps = 24/264 (9%)

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
            V  +   + C++ T+   +V  + +I  + + +    I       D +   + I     
Sbjct: 111 RVCNIAGRTNCVIQTQ---EVILNEIISNMKQYMSPAEIKKFLGNFDINTNYIEIFNSLL 167

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
           + ++     M       D         N +        +P D           ++     
Sbjct: 168 DTTISLKSSMNGFRKCCDRLINAEEKRNEIVEQVYS--LPQDERTICNYLVNVQMEKFEL 225

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL--NL 434
              ++ + ++ +IL   +     I+  + ++ +                  ++ +    +
Sbjct: 226 ENLVKQLSKKRKILDPTVDEIDIIENNLKLLHDNFDSLQEQDETDYCVTKMLEKVYSQAM 285

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL-----------------LNSGKQQWNQIAC 477
            L SL + +  +   E+D L  E EK+  +                 LN  ++  N I  
Sbjct: 286 SLLSLSREQREKYNKEVDQLKEENEKLREIIQHIDNRSSVGKCVTTDLNDIEKLHNVIKK 345

Query: 478 EIREVKEIFSKSTDLGRRRTTFCE 501
            I E ++     T+  ++++  CE
Sbjct: 346 TISEARKFEKTKTEELKQKSQECE 369


>gi|146184973|ref|XP_001030602.2| hypothetical protein TTHERM_01054240 [Tetrahymena thermophila]
 gi|146143123|gb|EAR82939.2| hypothetical protein TTHERM_01054240 [Tetrahymena thermophila
           SB210]
          Length = 879

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 102/341 (29%), Gaps = 21/341 (6%)

Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            ++ E    L      S  +   ++         +  +  E   ++  + +     + + 
Sbjct: 374 GQVKELENELQKIKYESNNEKSTFVEKMKMLKEQLTNQKEEDSKKAQNIEKIEMATQKKI 433

Query: 257 CVEEVGRG--SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            + +         + + +  Y        ++I EL    +    +    E+ +   I   
Sbjct: 434 ELLQNSNTNLQEKLSMIQEKYDQDTRAYKQEIIELETKYQNEFKQMQYKENHQFEIITTL 493

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG----ILKEWLAHRRE 370
            + R    + L + +   +  +         L   +       +     +LK   A  + 
Sbjct: 494 ERERDKLANQLEQLLQANTKYQLEVTDMQKSLKDEKEDYYKYKEENQILMLKNQSAQDQI 553

Query: 371 VLFRRSSFRMQAIDRRVE------ILKGLLIAYLNIDEIIAIIRN-----EDKPKPVMVS 419
              +R +  ++     +E        +         D  +  I+N      +  K     
Sbjct: 554 EELKRKNETLKKKMGDLEEQLFKMKNEKFEEKLQY-DNSLNQIQNLQVSLSNLKKEQEQE 612

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           +    + Q+D +    L     LE        D L  +  +I+ +  S  +   QI  E+
Sbjct: 613 KQIKDQMQLDLVKYKELS--NGLERENKLL-KDELSTKNSEIERIRESKDRIEEQIRREL 669

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            + K    +  +  +++ T     R D     + + EK  I
Sbjct: 670 EDTKAQKREYENKLKKKETKLSKLRDDMDQKIKRLNEKNLI 710


>gi|68004857|ref|XP_669992.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56484794|emb|CAH93996.1| hypothetical protein PB000342.00.0 [Plasmodium berghei]
          Length = 153

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              L+ W  +R + + +    +   + + + I+   L     I +II+ +      + + 
Sbjct: 2   KSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLTIQKKILDIISFLHKNQNIEQIQ 61

Query: 418 V---SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               S F L E+Q+  IL+++++ L  ++      + +N++ + +    ++++ ++    
Sbjct: 62  NYLKSNFKLNEDQIKYILSMKIQKLINIKNINFDIQKNNIIKKIQSNQYIIDNIQEIKQI 121

Query: 475 IACEIREVKEIFSKSTDL 492
           I  E+  +K  +S    +
Sbjct: 122 IIKELVHIKNKYSLKKKI 139


>gi|331090548|ref|ZP_08339401.1| hypothetical protein HMPREF9477_00044 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405891|gb|EGG85419.1| hypothetical protein HMPREF9477_00044 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1127

 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 69/246 (28%), Gaps = 21/246 (8%)

Query: 285 KIAELIIAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           ++ E I    + L++   D    + +  V+  ++         E++  + D   +     
Sbjct: 260 QLLENIREHNLNLIQFKSDAIRTQAILKVITIESLKAQLQSKKETLESVIDTVEKIGETC 319

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI-------LKGLLIA 396
            +L             I  +  A      + +    ++ I   +EI        + +L  
Sbjct: 320 RILEEQENKCFEEKVEIEAQIRA----SDYGQKEKELEEIRYTIEILAGSSAQWRAVLHG 375

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
               +E   I      P  +   R     N  + IL  +L+   K     I+ EL  L  
Sbjct: 376 LSAWEENEDISAYLSNP-ALHTIREVTEGNVTEEILT-KLKKYLKDTLENIEEELQELQY 433

Query: 457 EK-------EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
                     +   ++   K        E++  +     +      RT    +       
Sbjct: 434 SIRKTEKELAEKQEIIEDLKNDRKPYKKELKRARARLQNALSDRYGRTIHVGIFADLFDI 493

Query: 510 LQQAMI 515
             +   
Sbjct: 494 TDEKWK 499


>gi|289621258|emb|CBI52041.1| unnamed protein product [Sordaria macrospora]
          Length = 3189

 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 4/236 (1%)

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
               L E++      +   LLE + DE A E+   +L       +   ++         E 
Sbjct: 2388 TEDLYEQLETEQTTRANELLEHVIDEHALEEAETILEQIKAEAEQTEVLLEQTNTEQAER 2447

Query: 338  RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
               L   V++   + +       ++       E+L        +  +R +EI + L I +
Sbjct: 2448 VKELLEEVITEQALEETDNALEKIEAEAEQTEELLK---ELDTEQTERTIEIAQNLEIQH 2504

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
               +    + + E++ +        +   Q + +  L  +   + E  Q ++ ++++ AE
Sbjct: 2505 SLEENEKTLEQLENEIESTEELLEKVDAEQTERVEELLEQFETEKEIEQNQASMEDIDAE 2564

Query: 458  KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
             +K ++LL     + ++ A EI E +    + +      T+  E +        + 
Sbjct: 2565 VKKNEALLEELDIKQDERAEEILEQQGSQPEGSQQEHIPTSATESTEESLNPSTEV 2620


>gi|166890|gb|AAA32877.1| topoisomerase II [Arabidopsis thaliana]
          Length = 88

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 92  QSVYDSLVRLAQPF--VQRYPLISGQGNFGNI--DGDSAAAYRYTEARMTQVAELILQGV 147
           QS+  +++ +AQ +       L+   G FG     G  +A+ RY   +++ V  ++    
Sbjct: 1   QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKD 60

Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176
           D+  +D     + +  EP  +    P +L
Sbjct: 61  DDLLLD-YLNEDGQRIEPTWYMPIIPTVL 88


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 67  DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
            +   F KSA+ VG ++G  HPHGD S+Y+++VR++Q +  R  LI 
Sbjct: 1   SYDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIE 47


>gi|209520359|ref|ZP_03269123.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           sp. H160]
 gi|209499191|gb|EDZ99282.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           sp. H160]
          Length = 327

 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      ++ + R G  F+  ++ + + L V+      GD +A     ++L+ F +
Sbjct: 237 SGNRFFNTIGNLVHDPRAGLLFIDFANGDLLYLAVQAEIVWDGDELAAFAGAQRLVRFHV 296

Query: 676 DQIPEMSRGKG 686
           +++    R +G
Sbjct: 297 NEVR---RSRG 304


>gi|123437738|ref|XP_001309662.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121891398|gb|EAX96732.1| Leucine Rich Repeat family protein [Trichomonas vaginalis G3]
          Length = 737

 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 72/198 (36%), Gaps = 13/198 (6%)

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +  +N  L  D   E +  L+  +T   ++                 + K    HRRE+
Sbjct: 442 FIGLRNNELKDDAGNELLNALTKGKTVVDVD----VANNDFTYRSYVQLAKAIEVHRREL 497

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
               S    + I+   E  K L     +I E    + +  +     V + + T+   +A 
Sbjct: 498 NSNVSDAAQKHIEWLKEEEKKLFQCRADIKEEEFAVEDAQEEHRQKVEQLAETKKSKEA- 556

Query: 432 LNLRLRSLRKLEEY--QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
                  + +LEE    + ++ D +  E+ ++ + L   K+   +   E  E  +  +  
Sbjct: 557 ------EISQLEEQLSNLNNKYDEVSEERRELSAKLADEKRVLEKRQTEANEQYQQLNTK 610

Query: 490 TDLGRRRTTFCEVSRADK 507
               ++R +  E +R ++
Sbjct: 611 KQTLQQRLSKAEQNRKEQ 628


>gi|330917663|ref|XP_003297906.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1]
 gi|311329207|gb|EFQ94037.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1]
          Length = 2507

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 108/314 (34%), Gaps = 21/314 (6%)

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
               YR+G      RA    E   +    I    I +Q      +++        R+    
Sbjct: 841  RSLYRVGITKVFFRAGVLAELEDQRDALIRDIMIRFQSAARGFVQR--------RLANKR 892

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR-FPLNMNVLSMGRVP---QVM 355
              R E+       +  +N  +  DL     + L                + +     Q +
Sbjct: 893  LYRAEATR-----IIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQL 947

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK- 414
                  +     R E   RR+   +Q I + +E  + L +    I + + +   E   K 
Sbjct: 948  EEKMQQEAVERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKL 1007

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               +      E+Q+DA++  + +   + E   ++ EL+       K++      +QQ  +
Sbjct: 1008 AGAIEDQDQLEDQLDALMEAKKK--TEEEAEHLRRELEQAGQIISKLEGETQELEQQARR 1065

Query: 475  IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            +  +++E++ I S+ +    + +   ++  +  A  ++ + + E   +       I+   
Sbjct: 1066 LDEQLKELEVIRSQRSQAEEKLSQEIKMLTSHLALKERKLQDLEAKLLKTDQDLDIKLAA 1125

Query: 535  S-HSVDLSALHFKE 547
            S   V  S    KE
Sbjct: 1126 SVKEVQASKKQIKE 1139


>gi|254486417|ref|ZP_05099622.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043286|gb|EEB83924.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 152

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----SEEKMKLVVKVTGDHVAVVG 665
           +   LL ++ KG+  +    +     R G     +       + +        D + +  
Sbjct: 38  AENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVELDDQIMLAT 97

Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSA 715
              + +   +  I   SR   GV++     G +   + +   +G   ++  
Sbjct: 98  SKGQSIRVPVQGISFRSRSAGGVKVFDTGKGEVVVSVAWIADQGDDAVEDG 148


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFG 119
           D SVY ++VR+AQ F  RY LI G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDPA 36


>gi|295699492|ref|YP_003607385.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Burkholderia sp. CCGE1002]
 gi|295438705|gb|ADG17874.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Burkholderia sp. CCGE1002]
          Length = 327

 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 15/162 (9%)

Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588
           +I+S     ++ +A   +     +IA H  + DR LL S D   + + + NL    G G+
Sbjct: 154 YIQSRTPSFIERNAAATRA--QPEIATHLSSADRELLASAD--TFFIASANLSEEAGVGK 209

Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648
            +    D++H          D    L      GN F      ++ + R G   +  ++ +
Sbjct: 210 GV----DVSHRGGAPGFVRVDDAKTLTTPDYSGNRFFNTIGNLVHDPRAGLLVIDFATGD 265

Query: 649 KMKLVVKV----TGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686
            + L V+      GD +A     ++L+ F + ++    R +G
Sbjct: 266 LLYLAVRAEIIWDGDELAAFAGAQRLVRFHVGEVR---RSRG 304


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|118357866|ref|XP_001012181.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89293948|gb|EAR91936.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 4039

 Score = 45.9 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 87/216 (40%), Gaps = 8/216 (3%)

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
            K+RL E++ +L    +        +E    ++  +      +D          +S++ET+
Sbjct: 2583 KNRLQEQLTDLTSQNKNDKALKNEEEKNIALQQNIEDLKSQVD-----NYKIKVSELETQ 2637

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI--DRRVEILKGLLIA 396
                + +L+  +           +E    + ++    S+++   +  D   ++   L   
Sbjct: 2638 IKYELQMLNEKKQDLENANKRFREENKQLKEQIEKLNSNYQENKVANDSVTKLQTELNQK 2697

Query: 397  YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
               ID +   I N+DK             NQ+   L    + +++LEE   + EL  L A
Sbjct: 2698 INEIDHLKEQIINQDKQFKTEKMELENRFNQMKETLTKNEQKMKQLEEKS-EIELQKLQA 2756

Query: 457  EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
            +K+KI +++   K + ++I     E  +I ++  ++
Sbjct: 2757 KKQKISTIIEEAKAKSDEIILLKNEQIKIQAQYDNI 2792


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 27/33 (81%)

Query: 83  IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQ 115
           IGK HPHGD +VY+++VR+AQPF  RY L+ GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|196004823|ref|XP_002112278.1| hypothetical protein TRIADDRAFT_63930 [Trichoplax adhaerens]
 gi|190584319|gb|EDV24388.1| hypothetical protein TRIADDRAFT_63930 [Trichoplax adhaerens]
          Length = 853

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY------------- 573
            G+I     ++       FK  D  +I   A   D   L + D K +             
Sbjct: 588 NGYIHFWNVYNGGAIYASFKATDFDEIVAIATNHDNSRLFTADAKGFIGTWDIKTYASGG 647

Query: 574 --TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605
              +P   L S R H + I  +  + + + I TA
Sbjct: 648 KEYMPPDVLYSWRAHTQTITSMDLIEYQEAIATA 681


>gi|299751835|ref|XP_002911693.1| CAP-Gly domain-containing protein [Coprinopsis cinerea okayama7#130]
 gi|298409556|gb|EFI28199.1| CAP-Gly domain-containing protein [Coprinopsis cinerea okayama7#130]
          Length = 1099

 Score = 45.5 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%)

Query: 233  VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIA 292
            VE    +          F  R     E+  +      +  +  +++ +R   +I +L   
Sbjct: 776  VEGSADMDGDLSTRITAFTRRMGVEREQKDK-----EIERLKAELKAARESPEILDLTAQ 830

Query: 293  KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
                 L+    E     R +   K R  D  ++  S+      +T   L+          
Sbjct: 831  LNATRLDLEERE-----RDIKELKKRMRDVPVVNGSL------DTSKALSPTSSKSDSKE 879

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +V  L  I++E        L +      +    R E+ + L      ++E +      D 
Sbjct: 880  EVTGLKHIIQELQKDNSASLSKIHMLESENEHLRSEV-EQLRQEVRILEENLDDSLQNDD 938

Query: 413  PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                       T+ Q   I  LR + L  LE    ++ +  L  E  ++++L+ S   + 
Sbjct: 939  LPDDTSLLQRRTKQQALEIEQLR-KKLSDLEVNHGRT-IHELNKEIGELEALVESKIYRE 996

Query: 473  NQIACEIREVKEIFSKSTD 491
            +++  EI  +KE  S++  
Sbjct: 997  DELEQEIERLKEKISRAKK 1015


>gi|146165602|ref|XP_001015474.2| hypothetical protein TTHERM_00378930 [Tetrahymena thermophila]
 gi|146145419|gb|EAR95229.2| hypothetical protein TTHERM_00378930 [Tetrahymena thermophila SB210]
          Length = 1620

 Score = 45.5 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 65/194 (33%), Gaps = 18/194 (9%)

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
             + V+  K+  +    L   +            N+++L    +        I +E     
Sbjct: 892  TQFVITGKSNEVIYKNLPVFLRESFPRIQEVSQNLSLLKQCDLDHFNACCQINQEQKGDL 951

Query: 369  REVLFRRSSFRMQAIDRRVEI--------------LKGLLIAYLNIDEIIAIIRNEDKPK 414
             ++   +  F ++ I+++                             E+   +      K
Sbjct: 952  CQIQISQDIFEIRQIEKQFNYLIQSRRDAIGKLLQQIKYKKEVKKAQELEQKLNYVKTIK 1011

Query: 415  PVMVSRFSLTENQVDAILNLRLRS----LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
               + +  + + Q      L+L+     L +LE  +I+++   L  ++E+   +L +  +
Sbjct: 1012 ENFLRKVEMIQQQKKEQHELKLKKAQEELNQLEIKRIQAKYKKLFEQQEEKAIILQNQLK 1071

Query: 471  QWNQIACEIREVKE 484
            +  +I  E  E+ +
Sbjct: 1072 ENERIKQEQLEIIK 1085


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y +LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|148255704|ref|YP_001240289.1| putative toxin/protease secretion system [Bradyrhizobium sp. BTAi1]
 gi|146407877|gb|ABQ36383.1| putative toxin/protease secretion system [Bradyrhizobium sp. BTAi1]
          Length = 661

 Score = 45.1 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 17/176 (9%)

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC-EV 502
           +  ++  +  L  E   ++S L+S  +Q   I  E+  V+E++ K      R TT   E 
Sbjct: 385 KELLQGRIVQLNNEISGMESQLDSKNKQIELIKGELAGVQELYDKRLVPLTRLTTLQREA 444

Query: 503 SRADKA---------TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +R D             +  + E E  TV I        +K    DL     KEGD ++ 
Sbjct: 445 ARIDGERGQLVSSVAETRSKISEAELQTVKIDQDFRSEVVK----DLGDAQAKEGDLVEK 500

Query: 554 ALHAHT-TDRILLLS-TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607
            + A    DRI + +   G  + L    +      GE I  L+  + ++  V A V
Sbjct: 501 GVAARDQLDRIEMRAPNSGTIHQLAVHTIGGVIKPGETIMELVP-DSDELQVEAHV 555


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 45.1 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|326383129|ref|ZP_08204818.1| hypothetical protein SCNU_09331 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198265|gb|EGD55450.1| hypothetical protein SCNU_09331 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435
            +     R +I   LL A     E++  I +    D     +      ++   + ILN+ 
Sbjct: 3   DLDQTATRRDITDALLTAMERRHEVLDAIVDAEDRDAAANAIADLLGKSKLGAETILNMS 62

Query: 436 LRSLRKLEEYQIKSELDNLLAEK 458
              L K E    ++ELDNL    
Sbjct: 63  FYQLTKAERRNNQAELDNLNEAI 85


>gi|194216321|ref|XP_001502145.2| PREDICTED: similar to 5033413D22Rik protein [Equus caballus]
          Length = 1324

 Score = 45.1 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 79/214 (36%), Gaps = 18/214 (8%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+    I ++ ++  +   ++ +V+  K++      L   ++    M+  F +  
Sbjct: 603 QQLQKLLENLEIHMILEVLRKVNREISLVVSEKSKEQS--TLPTDLWKHQVMKENFSVIR 660

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEILK 391
             +    + ++M         +  R+            +V+ R  S           +L+
Sbjct: 661 PQIVEKFIQRLMENHQDGGLEITFRKEHLEACLLSLGCDVMARERSNFESYSMCYEHVLE 720

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR-LR-SLRKLEEYQIKS 449
                    ++ + ++R    P+     + +  E   D I+ +  LR  L  LEE  +  
Sbjct: 721 HARQKLCRKEQELDVLREGQSPREDNAGQVA--ELSHDMIMEITALRARLTDLEEENLNL 778

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +       +E+ ++L+ +       I  ++ E +
Sbjct: 779 KKQIRKEVQEEYEALVQALFVTCLHIKEKLDENQ 812


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 45.1 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+Y++LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|207110961|ref|ZP_03245123.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 45.1 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK--------EGDSL 551
               RA      + +I  EP+ V +S +G+++ +   + +      K        E D +
Sbjct: 6   IIEERAKGDYKIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFI 65

Query: 552 KIALHAHTT 560
           +    A+T 
Sbjct: 66  ENFFVANTH 74


>gi|146340900|ref|YP_001205948.1| HlyD family secretion protein [Bradyrhizobium sp. ORS278]
 gi|146193706|emb|CAL77723.1| putative secretion protein (HlyD family); putative toxin/protease
           secretion system [Bradyrhizobium sp. ORS278]
          Length = 644

 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC-EV 502
           +  ++  +  L  E   +++ L+S  +Q + I  E+  V++++ K      R TT   E 
Sbjct: 369 KELLQGRIVQLNNEISGMEAQLDSKTKQIDLIKGELAGVQDLYDKRLVPLTRLTTLQREA 428

Query: 503 SRADKA---------TLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553
           +R D             +  + E E  TV I        +K    DLS    KEGD ++ 
Sbjct: 429 ARIDGERGQLVSSVAETRSKISEAELQTVKIDQDFRSEVVK----DLSESQAKEGDLVEK 484

Query: 554 ALHAHT-TDRILLLS-TDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
            + A    DRI + +   G  + L    +      GE I  L+  + ++
Sbjct: 485 GVAARDQLDRIEMRAPNSGTIHQLAVHTIGGVIKPGETIMELVP-DSDE 532


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPA 36


>gi|291396731|ref|XP_002714934.1| PREDICTED: 5033413D22Rik protein-like [Oryctolagus cuniculus]
          Length = 1096

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 81/213 (38%), Gaps = 16/213 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+    I +++++  +   ++ +VL  K+R   P  L   ++    M+  F ++ 
Sbjct: 591 QQLQQLLENVEIHMIQEVLRKVNREMTLVLSEKSRKECP--LPTDLWKHQAMKENFSISR 648

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVL-------------FRRSSFRMQAIDRRVEIL 390
             +    + ++M      +  +  RRE L               RSSF   ++     + 
Sbjct: 649 PQIVEKFIQRLMESYKDGEHEITFRREHLEACLLSLGCDVMARERSSFEAYSLCYEQVLQ 708

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                      E+  + R +  P+ V      L+ + +  I  LR   L  LEE  +   
Sbjct: 709 HARQRLRQKEQELEVLQRGQGPPEDVATQVAELSHDMIMEITALR-AQLTALEEENLNLR 767

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
                  +E+ ++L+ +       I  ++ E +
Sbjct: 768 NQIRKEVQEEYEALVQALFVTCLHIKEKLDENQ 800


>gi|189188632|ref|XP_001930655.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972261|gb|EDU39760.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 2305

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 107/314 (34%), Gaps = 21/314 (6%)

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
               YR+G      RA    E   +    I    I +Q      +++        R+    
Sbjct: 717  RSLYRVGITKVFFRAGVLAELEDQRDALIRDIMIRFQSAARGFVQR--------RLAHKR 768

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR-FPLNMNVLSMGRVP---QVM 355
              R E+       +  +N  +  DL     + L                + +     Q +
Sbjct: 769  LYRAEATR-----IIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQL 823

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK- 414
                  +     R E   RR+   +Q I + +E  + L +    I + + +   E   K 
Sbjct: 824  EEKMQQEAAERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKL 883

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
               +      E+Q+DA++  + +   + E   ++ EL+       K++      ++Q  +
Sbjct: 884  AGAIEDQDQLEDQLDALMEAKKK--TEEEAEHLRRELEQAGQIISKLEGETQELEEQARR 941

Query: 475  IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            +  +++E++ I S+ +    +     ++  +  A  ++ + + E   +       I+   
Sbjct: 942  LDEQLKELEVIKSQRSQAEEKLGQEIKMLTSHLALKERKLQDLEAKLLKTDQDLDIKLAA 1001

Query: 535  S-HSVDLSALHFKE 547
            S   V  S    KE
Sbjct: 1002 SVKEVQASKKQIKE 1015


>gi|82596619|ref|XP_726336.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481704|gb|EAA17901.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 667

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 99/301 (32%), Gaps = 29/301 (9%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K    EK+             +  +E   +              + + E +      +  
Sbjct: 237 KENWKEKMERQNSEHNSEHNSEHNNEHNSEQHN-----------EQVSEQVSEQISEQVS 285

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA-Y 397
             +N  VL        +  +  ++   A  R      +  ++  ++ R    + +     
Sbjct: 286 EQINNMVLENVSSNGTIEKNKDIENVEARNRMWKDFVNETKLAKLNYRNIKNRNIENKDI 345

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE------L 451
             I+E+   I+ E+  K + + +     N++  I    L+  + L++ +   E       
Sbjct: 346 YKIEELNKKIQVENTEKKINIEKQKNQLNRLSYIYEHELKRYQCLKDERRNLEFLNICLY 405

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQI----ACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            ++  +KE I ++ N  K+  + I       +   K    K  D+        ++ +   
Sbjct: 406 KDIKYKKENIKNIKNEIKELIHDINKINIENLNINKSYIKKEKDVRTADQKRKDLEQVIN 465

Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
              +    +++ + ++ +   ++R  K+ ++ L          LK       TD  LL+ 
Sbjct: 466 KEKKYLKKDEKNLIMLKNMILYLRKQKAQALKLQN-------DLKNRYDVTNTDYQLLVK 518

Query: 568 T 568
            
Sbjct: 519 N 519


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDPA 36


>gi|328715504|ref|XP_001946006.2| PREDICTED: hypothetical protein LOC100162107 [Acyrthosiphon pisum]
          Length = 553

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 89/273 (32%), Gaps = 7/273 (2%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
           G R   R   E     S  +++   PY      +   I++     +        DE  + 
Sbjct: 35  GPRSSFRMNSELKHSRSDDLILQGAPY--TPPDMQHGISDAAFQIQKDACVVYDDEVNDH 92

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              V   ++  + P+     +  L+   +    N     + R+     +  I+ +   +R
Sbjct: 93  RISVACYESPIVAPESNPTPLLKLTGDFSSEGANKRCSVIDRIDPEDSIGDIISQNDFYR 152

Query: 369 REVLFRRSSFRM---QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
             +  R     +   +  +    +   L   Y  I      + +        +    L  
Sbjct: 153 FVLFKRHYEKYLDISRKYEEARSLAYYLEEKYHEIKAERDSLIDTHHELEKQLVTRDLEL 212

Query: 426 NQVDAILNLRLRSLRKLEEY--QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++ +  L L+L  + +LEE   ++++E D ++  K++++   N   +Q    A      +
Sbjct: 213 HEKEEELFLQLEKVIRLEEDCEKLRTEKDKMVKWKDRLEREKNEAYRQLRLQAESSEITR 272

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               K+     R+ +     +         + E
Sbjct: 273 RNLEKARLDAYRQFSEIAAEKDTLEKENSRLKE 305


>gi|270002442|gb|EEZ98889.1| hypothetical protein TcasGA2_TC004504 [Tribolium castaneum]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 20/256 (7%)

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                 ++ R    + E+   S  +   E   + +   L   I EL    +I  LE+  D
Sbjct: 223 ETDLESYKKRNNELLTELTEKSEFVTKYENDTKAKIEELESTIKEL--EVKITTLENELD 280

Query: 304 -----ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN-----VLSMGRVPQ 353
                +   + +  +    R  +   + E +   +  +             + ++  + +
Sbjct: 281 TLKKEKEKLEEQRTIILAERDAEKQKVDEILEQATAQKQEIEKKWKQDFEKLRTINIMKE 340

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
              LD    +    ++    R         +R  E  K         ++++  +      
Sbjct: 341 QQLLDDFEWKLREVQQTCKKRLDDKDKSIEERLQEAYKEAERKMQEAEKMMQQVEAMKSY 400

Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           +  +     LTE+Q +AI  +  +        Q+K   +NL  E +++ +L+   K+   
Sbjct: 401 EIEIEKLRGLTEDQENAIKEMMEQQ------EQMKQAENNLKNETKRLRNLIELEKENLQ 454

Query: 474 QIACEIREVKEIFSKS 489
            I  +++  +EI  K 
Sbjct: 455 HI--QLKHHQEILDKE 468


>gi|118364970|ref|XP_001015706.1| hypothetical protein TTHERM_00077650 [Tetrahymena thermophila]
 gi|89297473|gb|EAR95461.1| hypothetical protein TTHERM_00077650 [Tetrahymena thermophila SB210]
          Length = 1973

 Score = 44.7 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 94/289 (32%), Gaps = 18/289 (6%)

Query: 261  VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320
            +      IV++++  +++  + I         + +   E   ++  + +      K    
Sbjct: 1153 IDESDESIVISQVGQEIKNQQKINATNSQHKIRDMKEPEHNFEQLTKMLNSQENSKKNEK 1212

Query: 321  DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH-RREVLFRRSSFR 379
                L + +   +         ++ L              LKE     +     ++   +
Sbjct: 1213 IVTDLQKQVQNFTHHNNLLQRKIDELLNLNTKLQNDKQDSLKECEDLKQEIQEIKKKQPK 1272

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             +  +R  ++   L    + ID++   I         +       E+Q   IL+LR    
Sbjct: 1273 NEEQERIKDMYIELKNKLMMIDKVKQDIVKH----QNVPLLQKKIEDQQKQILDLR---- 1324

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
               E+ Q   +++ L  E   +       K    +I  +++E++++        +R    
Sbjct: 1325 ---EQNQQHQKINELFKE--DLIKNTEESKLLKERIQQQLQEIQKLKHLEIQTKKRTDQL 1379

Query: 500  CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             E    + +     + EK+ +   ++ +   R   +  +  SA    + 
Sbjct: 1380 TE----ENSQFATLLKEKDNVIENLTQQLKQRDQINFKLTPSASSVNKD 1424


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 44.7 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQ +  R PL+   GNFG+   D A
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|259482250|tpe|CBF76551.1| TPA: mitochondrial protein Fmp25, putative (AFU_orthologue;
           AFUA_3G11100) [Aspergillus nidulans FGSC A4]
          Length = 575

 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 39/160 (24%)

Query: 558 HTTDRILLLSTDGKAYTLPA--GNLLSGR----------GHGEA------IQLLIDLNHN 599
            + DRI+ LS+DGK Y+LP    +  SG+            G++      IQ ++ L   
Sbjct: 192 MSHDRIVALSSDGKVYSLPVSKHDQTSGKKAEEKSWLPFSSGKSSMSYRLIQPILKL--G 249

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLK-------------- 643
           + IV          +L+++S G  F  +       +  + G   L               
Sbjct: 250 EKIVAISGGLE--HVLLLTSSGRVFSAVSSTENFPSFGQLGVPGLTWATRPPGPVDAPHE 307

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
           V +   +K+    TGD H  ++ +N  +L F  +   ++ 
Sbjct: 308 VKTPNGVKVAQIATGDYHSLLLTKNGNVLAFGDNSFGQLG 347


>gi|67537430|ref|XP_662489.1| hypothetical protein AN4885.2 [Aspergillus nidulans FGSC A4]
 gi|40741773|gb|EAA60963.1| hypothetical protein AN4885.2 [Aspergillus nidulans FGSC A4]
          Length = 1713

 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 39/160 (24%)

Query: 558 HTTDRILLLSTDGKAYTLPA--GNLLSGR----------GHGEA------IQLLIDLNHN 599
            + DRI+ LS+DGK Y+LP    +  SG+            G++      IQ ++ L   
Sbjct: 52  MSHDRIVALSSDGKVYSLPVSKHDQTSGKKAEEKSWLPFSSGKSSMSYRLIQPILKL--G 109

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLK-------------- 643
           + IV          +L+++S G  F  +       +  + G   L               
Sbjct: 110 EKIVAISGGLE--HVLLLTSSGRVFSAVSSTENFPSFGQLGVPGLTWATRPPGPVDAPHE 167

Query: 644 VSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMS 682
           V +   +K+    TGD H  ++ +N  +L F  +   ++ 
Sbjct: 168 VKTPNGVKVAQIATGDYHSLLLTKNGNVLAFGDNSFGQLG 207


>gi|301606211|ref|XP_002932719.1| PREDICTED: desmoplakin isoform 1 [Xenopus (Silurana) tropicalis]
          Length = 2851

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 91/273 (33%), Gaps = 26/273 (9%)

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESI--------FMLSDMETRFPLNMNVLSMGRVPQVM 355
            ESAE     +    R  D   L+  +           + +E                   
Sbjct: 994  ESAEIQACYIELLTRGNDYYRLLHELSKSLEDLKMKNTRIELLEEELRLARDANSDNSQK 1053

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL-----KGLLIAYLNIDEIIAII--- 407
                             ++     ++ I R+ E+      + L   Y  I E+   I   
Sbjct: 1054 NKYLDQNLQKYQIECNEYKSRILLLEDIKRKAEMDGSSAKQNLEKYYSQITELNDKITRL 1113

Query: 408  ----RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE--LDNLLAEKEKI 461
                 +E + +  +  R  + +N  D +   +   L  +   ++++E        E E++
Sbjct: 1114 TYEIDDEKRRRKALEDRCEMQKNDFDQMQKKKQNDLDAINRQRLETEKIYKEKEYEIERL 1173

Query: 462  DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
              LL    Q+  +   E+ +V++ ++   ++   RT +       K T+QQ   +KE  T
Sbjct: 1174 KILLQDEGQRKREYENELSKVRKQYND--EISSLRTKYESEITITKTTIQQISAQKEEDT 1231

Query: 522  VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
              +  +  +  L   + DL+A   +  D +   
Sbjct: 1232 YDL--KSQLEKLARDNRDLTAEITRMNDGMAQI 1262


>gi|162455861|ref|YP_001618228.1| putative secreted protein [Sorangium cellulosum 'So ce 56']
 gi|161166443|emb|CAN97748.1| putative secreted protein [Sorangium cellulosum 'So ce 56']
          Length = 701

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 19/136 (13%)

Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK--GNAFIVEESEIIA 633
               L  G G+G   ++  +L   +D+     YD   K L  ++   G  F V+      
Sbjct: 148 KLFRLPRGAGNGGPAKVFAELPDTEDVWG-LAYDPRAKALYAATGSGGKLFRVDA----- 201

Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK 693
               GK  +   S+E   + V V  D     G N K L++ +       R          
Sbjct: 202 ---AGKAQVYFDSDEPHLMCVAVGDDGAVYAGSNGKALLYKVT---APGRAT-----VLY 250

Query: 694 DGGISDVICFKICEGL 709
           D    DV    I  G 
Sbjct: 251 DFDADDVKAIAIAPGA 266


>gi|118373839|ref|XP_001020112.1| hypothetical protein TTHERM_00661480 [Tetrahymena thermophila]
 gi|89301879|gb|EAR99867.1| hypothetical protein TTHERM_00661480 [Tetrahymena thermophila SB210]
          Length = 1613

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 89/243 (36%), Gaps = 5/243 (2%)

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
            K  LI+    LI  K    +E    +++ + +   F K      +++++ I   S  +  
Sbjct: 849  KEDLIQNNQTLIQEKENLQVEIESLQTSMEQQKDAFDKEIDAFEEIVLQIIEKGSSGDQD 908

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
               ++    +  + +++    +  +    ++E L +   +  Q I+     ++ L     
Sbjct: 909  HHASLQQPKLTSLIEILNKKMVEVQS---QKEHLEQEMKYLNQDIENEKMTVEQLYQECD 965

Query: 399  NIDEIIAII-RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-YQIKSELDNLLA 456
            N+ E   I+ +N D           L E +   +  L+ +   K  +    ++++    A
Sbjct: 966  NLAEEKNIMAQNYDNALAEKKQVCELLEEKTQQLRELQEKEQNKENDFQHFENQIKEKEA 1025

Query: 457  EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            +  ++++ L    +   ++  E++E  ++  +  +  +      +       T    + E
Sbjct: 1026 QILELENKLQEINKTTEEVNSELKEKIDVLHEKEETIKILKESLDNYNIKYNTKVSELQE 1085

Query: 517  KEP 519
               
Sbjct: 1086 IHD 1088


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+Y +LVRLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDPA 36


>gi|221127963|ref|XP_002165234.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 764

 Score = 44.4 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 38/262 (14%)

Query: 255 RWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIA---ELIIAKRIPLLEDIRDESAEDVR 310
           +  VEE+     + + + ++ Y     +L EK     EL+  K   L  D   E  +   
Sbjct: 509 KTRVEELKMENEYQLRLKDMNYNETIKQLTEKFLQEIELLKTKNQILKTDREKEVEKQQE 568

Query: 311 IVLFPKN---------RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
            +               +++   LM        ++ +   N       R       +  L
Sbjct: 569 ELADLLAHHNKQLEDIDTVNNKKLMTEYEKYQQLQIKNQRNQEEFEKLRQQMEESREKAL 628

Query: 362 KEWLAHRREVLFRRSSFR----MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
           +E      + L  ++S       +     +E  +       + D  I  I N+ + +   
Sbjct: 629 QELTEFYEKKLQEKNSHLDNLNEELAQNLLEYEETKKQIEEDADCEILDINNKYEKRLR- 687

Query: 418 VSRFSLTENQVDAILNLRLRSLRKL----------EEYQIKSELDNLLAEKEKIDSLLNS 467
                  E       NLRL+    L          E  ++KSE+  L  E+ K+ S + S
Sbjct: 688 ------DEKDA----NLRLKGETGLMKRKFTSQQKEIEELKSEIQRLHGEEGKLQSTIES 737

Query: 468 GKQQWNQIACEIREVKEIFSKS 489
            ++    +  EI+E +E     
Sbjct: 738 LEKDIYGLKKEIQEREETIQDK 759


>gi|145479367|ref|XP_001425706.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392778|emb|CAK58308.1| unnamed protein product [Paramecium tetraurelia]
          Length = 555

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 103/271 (38%), Gaps = 17/271 (6%)

Query: 260 EVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+ R    I+  E   +V     +  E++ +L  ++           S E +  +   + 
Sbjct: 239 ELRRSRERIIQIEREREVLEDLKKSRERVEDLRRSRERLEQMQDLKRSRERIEQLDELRR 298

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL-FRRS 376
                + L +S   L D++        +  + R  Q M     LK+    + ++   R+S
Sbjct: 299 SRERLEDLRKSRERLEDLKKSRERLNQLEELKRSRQRMEELEELKKSRERQAQIDELRKS 358

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R++ + +  E L+ L     N ++I  +            SR    +NQ   I  LR 
Sbjct: 359 RERLEDLRKSRERLEQLEQERKNQEKIEEL--------RKSRSRIEELQNQRKKIEELRT 410

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
               +LE+ + + E   L   +E+++ L  S ++       +I  +++   +   L   R
Sbjct: 411 SQ-ERLEQLKRQKEEIELKKSQERLEDLRKSRERL-----EQIEALRQSREQQRALEELR 464

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            +   V +  K+ L+   +E E   +  S +
Sbjct: 465 QSRERVEQLRKSQLRIEQLENERQVLERSRQ 495


>gi|301775747|ref|XP_002923314.1| PREDICTED: keratin, type II cytoskeletal 1b-like [Ailuropoda
           melanoleuca]
          Length = 528

 Score = 44.4 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 104/310 (33%), Gaps = 16/310 (5%)

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G   S P   +QE+     +L+    + ++  ++ +            E  + +V + + 
Sbjct: 136 GFGPSCPPGGIQEVTVN-QSLLQPLHLEVDPEIQRVK---------TQEREQIMVLNNKF 185

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
                +VR      +V +  W     E+  QV  S     +  ++      L        
Sbjct: 186 ASFIDKVRFLEQQNQVLQTKW-----ELLQQVDTSTRTHNLEPILEKYISELRRRADILD 240

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           A+  R     KN     +          + +     +  VL        M    +  +  
Sbjct: 241 AQQTRQNTEVKNMQDAVEDYKNKYEEELNRKANTENDFVVLKKDVDAAYMSKADLESKVN 300

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
               E+ F +  F M+    +  I    +I  ++ +  + +    D  +         ++
Sbjct: 301 VLFGEINFLKYLFEMELSQMQTHISDTNVILSMDNNRFLDLDSIIDAVRTQYELIAQKSK 360

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           ++ +A+   + + L ++   +   EL N   E  +++  +   + + + I  +I ++   
Sbjct: 361 DEAEALYQTKYQEL-QISAGRQGDELKNSKMEIAELNRTIQRLQAEISNIKKQIEQMHMA 419

Query: 486 FSKSTDLGRR 495
            S + + G R
Sbjct: 420 ISDAEERGER 429


>gi|313247204|emb|CBY36019.1| unnamed protein product [Oikopleura dioica]
          Length = 999

 Score = 44.4 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 70/211 (33%), Gaps = 32/211 (15%)

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++  +DE      I +  K +++       ++       T +      +       +  
Sbjct: 799 FIKPGKDEFRGSQSIEIVQKAKTILEAE--NALVEHIGESTTYEKLTTAILNLHSKSIEN 856

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
                     H +          +   ++++E  + L    +++           K  PV
Sbjct: 857 P-----AVCNHPKWKET------IAKAEQKLENYRRLSNLVVDL-----------KLTPV 894

Query: 417 MVSRFSLTENQVDAILNL-RLRSLRKLEEYQIKSELD---NLLAEKEKIDSLLNSG---- 468
              R   ++N V+ + N+ +L+ L  +E+ ++  + +    +    ++   +L+S     
Sbjct: 895 TTKRLYKSQNAVEELKNMPQLKELASIEQKELIEKAETVTEIWRMVQEYQDILDSRKTPD 954

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           +++   I   I    E  +    +    T+ 
Sbjct: 955 EKEQKLIESRIEAKLEQINNPDIISYILTSI 985


>gi|23345305|gb|AAN28728.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 636 RKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK      +   +     LV     + + ++ +   ++  S+  I +  R   GV++ 
Sbjct: 6   RGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVM 65

Query: 691 SYKDGGISDVICFKICEGLTW 711
              +   + ++ F + +    
Sbjct: 66  RLDEN--AKIVTFALVKSEVI 84


>gi|27363832|ref|NP_759360.1| hypothetical protein VV1_0362 [Vibrio vulnificus CMCP6]
 gi|27359949|gb|AAO08887.1| hypothetical protein VV1_0362 [Vibrio vulnificus CMCP6]
          Length = 212

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A +  ++    +DG        +  +       +     L+      T   +D+  KLL
Sbjct: 24  SAQSKTQVAFACSDGVI----VVDTPNATPQFTKLANPAGLDTGSRFGTVVGFDAADKLL 79

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            ++ +  AF + + E+     K       SS E+  L      D + VV  N  L +F+ 
Sbjct: 80  FLTRQAQAFYLAQGELKEVNWK-------SSPEEGALAHYAANDALVVVSSNGTLKVFNA 132

Query: 676 D 676
            
Sbjct: 133 A 133


>gi|37679012|ref|NP_933621.1| hypothetical protein VV0828 [Vibrio vulnificus YJ016]
 gi|37197754|dbj|BAC93592.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 428

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A +  ++    +DG        +  +       +     L+      T   +D+  KLL
Sbjct: 240 SAQSKTQVAFACSDGVI----VVDTPNATPQFTKLANPAGLDTGSRFGTVVGFDAADKLL 295

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            ++ +  AF + + E+     K       SS E+  L      D + VV  N  L +F+ 
Sbjct: 296 FLTRQAQAFYLAQGELKEVNWK-------SSPEEGALAHYAANDALVVVSSNGTLKVFNA 348

Query: 676 D 676
            
Sbjct: 349 A 349


>gi|38569887|gb|AAR24461.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 636 RKGKTF----LKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQ 690
           R GK      +   +     LV     + + ++ +   ++  S+  I +  R   GV++ 
Sbjct: 6   RGGKGIKTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVM 65

Query: 691 SYKDGGISDVICFKICEGLTW 711
              +   + ++ F + +    
Sbjct: 66  RLDEN--AKIVTFALVKSEVI 84


>gi|110611865|gb|AAI19558.1| Jakmip3 protein [Mus musculus]
          Length = 463

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 76/191 (39%), Gaps = 10/191 (5%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-VSRFSLTENQVDAILN 433
           +  F ++ +  + EI + L  A   ++E + ++   DK K     S + L + ++  I  
Sbjct: 144 KKGFEVEKVKMQQEISE-LKGAKKQVEEALTMVIQADKIKAAEIRSVYHLHQEEITRIKK 202

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-------IREVKEIF 486
              R +R+LE+   + +      +  ++ +++   + +   ++ E       +RE +  +
Sbjct: 203 ECEREIRRLEQQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRLREAESQY 262

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR-GWIRSLKSHSVDLSALHF 545
               D  +R T   E        ++  +       + +  R G IR   S +    +   
Sbjct: 263 KPLLDKNKRLTRKNEDLSHTLRRIESKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDE 322

Query: 546 KEGDSLKIALH 556
           +E D LK+ + 
Sbjct: 323 REIDFLKLQIV 333


>gi|322785809|gb|EFZ12428.1| hypothetical protein SINV_01764 [Solenopsis invicta]
          Length = 588

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 74/230 (32%), Gaps = 23/230 (10%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           +      +   E +   +D +    +    L    + ++     I+        + +  R
Sbjct: 237 REMDRHLEKQNEFLGKQTDYQKEIVVLNEKLKALEMEKLEQSKQIVD------LQSVIDR 290

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +   + +I   +E+ K    A   + E   +I       P  +   ++          + 
Sbjct: 291 NRQELNSIRSELELHK--ARALKTLQEKEKLIAELKSNAPTAMDEATI----------ME 338

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           L  L++ E   ++ E   +  + + +   L +      +I  +  E      +     RR
Sbjct: 339 LNQLKQ-ERDSVREENQQMCQQLKILREELANADLNLEKIKQKSAETNLQNQEILASERR 397

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
           R    E      +   +++ +     ++    G+   L+  + ++S L  
Sbjct: 398 RRLEAEDDMKLHSEEIRSLKDD----LISQRNGFSLQLQKQNSEISRLKL 443


>gi|229494143|ref|ZP_04387906.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318505|gb|EEN84363.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 223

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAI 431
            ++     I  R EI   L+ A     E++  + +    +  + +   L   +E   +A+
Sbjct: 1   MTTHIQDQILDRREITSALVRALERRHEVLDAVVDSKDHQEALTTVAELLGTSEANAEAV 60

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           L+L+  +L K    +I+ EL+NL A  E 
Sbjct: 61  LSLKFSALTKAARDRIQGELENLDATLEW 89


>gi|226304411|ref|YP_002764369.1| hypothetical protein RER_09220 [Rhodococcus erythropolis PR4]
 gi|226183526|dbj|BAH31630.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 223

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAI 431
            ++     I  R EI   L+ A     E++  + +    +  + +   L   +E   +A+
Sbjct: 1   MTTHIQDQILDRREITSALVRALERRHEVLDAVVDSKDHQEALTTVAELLGTSEANAEAV 60

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
           L+L+  +L K    +I+ EL+NL A  E 
Sbjct: 61  LSLKFSALTKAARDRIQGELENLDATLEW 89


>gi|212545721|ref|XP_002153014.1| bZIP transcription factor, putative [Penicillium marneffei ATCC
           18224]
 gi|210064534|gb|EEA18629.1| bZIP transcription factor, putative [Penicillium marneffei ATCC
           18224]
          Length = 661

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 91/252 (36%), Gaps = 44/252 (17%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R +         ++  + R EI         NID++I+   NE++ K +   +  L   
Sbjct: 218 YRTDSNLHLRRDGIRKKNARFEIP--AERTLSNIDQLISQSTNEEEIKELKQQKRLLRNR 275

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           Q      L  R  +KL   +++ E          ++  L+S K +  ++   +RE  E  
Sbjct: 276 QA----ALDSRQRKKLHTEKLEEEKKQFTTVITDLEEALHSMKIREGEL---LREKAEWL 328

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546
           +         + + E  R +K  L                      ++ H+++ + L  K
Sbjct: 329 TTQQQY----SQWIEGLRMEKDEL----------------------IRVHTLETAELRKK 362

Query: 547 EG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
                   + ++    +    +    +T+G        +L    GH + + L+ +++   
Sbjct: 363 NNILRETMEKMEQQFKSMGHQQSNAFATNG---YNDFESLPMESGHWDELSLVNNISLEA 419

Query: 601 DIVTAFVYDSTC 612
           + ++A V D+  
Sbjct: 420 ECLSAPVVDANS 431


>gi|254458821|ref|ZP_05072245.1| chaperone protein DnaK [Campylobacterales bacterium GD 1]
 gi|207084587|gb|EDZ61875.1| chaperone protein DnaK [Campylobacterales bacterium GD 1]
          Length = 628

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTE--NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +EI  ++++ ++ K     R ++ +  NQ DA++    +SL ++ +     E   + A  
Sbjct: 505 EEINKMVQDAEENKAADTERKAMVDLRNQADALIAQTEKSLTEIGDKIEAEEKAKIEANV 564

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE 484
             +  +L        QI  +++ + E
Sbjct: 565 TDLKDILKDESATKAQIEEKVKALTE 590


>gi|294671325|ref|ZP_06736176.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306957|gb|EFE48200.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 72

 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695
            ++     L+   ++QI E  R   GVRL +  +G
Sbjct: 1   MLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 35


>gi|295108748|emb|CBL22701.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 653

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 21/238 (8%)

Query: 278 QKSRLIEKIAELIIAKRIPLL---------EDIRDESAEDVRIVLFPKNRSLDPDLLMES 328
              +L+EK AEL+ +  +  L         E  RD S+    +     +R +      E+
Sbjct: 241 NCVKLLEKAAELVRSDSLGTLICKNQVFIAETARDSSSWKYEVNARTPDRYIKEYSFTEA 300

Query: 329 IFML-SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387
                +D    +  N  +   G+    +      +                + +      
Sbjct: 301 AKKTRTDKIDSYKKNQTLFEGGQASLTIKAVQGNRREEELELGRKQYWEEHQAEKEQMED 360

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR--LRSLRKLEEY 445
           E  K L      ID  I  +    + K   V R   T+ Q+ ++   +  L   +  E+ 
Sbjct: 361 EK-KQLSERVAAIDTEIQGMPVFKELKDATVKRNE-TDEQIVSLSEYQRSLGMFKGKEKK 418

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
            +++++D L A++     L++  ++        +              +RR +  E  
Sbjct: 419 ALQAQIDELKAKRADYVELMSKLEETAKSARKPL-------DDERTSAQRRISEIEAE 469


>gi|146186222|ref|XP_001033205.2| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|146143219|gb|EAR85542.2| Protein kinase domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 1035

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 100/270 (37%), Gaps = 34/270 (12%)

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL--LEDIRDESAEDVRIV-- 312
            ++E+ + +  +       + Q   L+++I +L     +    +  ++DE+  +   +  
Sbjct: 513 EIKELQKDNQQLKKDVDGLKDQNQNLLDEIQKLKEKDELQQQEINQLKDENKANQEKIEQ 572

Query: 313 ----LFPKNRSLDPDL-----LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
               +   ++    +      LM+ +  L        L M++LS   + Q      I +E
Sbjct: 573 QQKTIDELSKDNQKNKEDIAYLMDELKKLKSEIDSIKLQMSLLSGNGIDQYRQQVTIFQE 632

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL------NIDEIIAIIRNED---KPK 414
            +   +E         ++ + +++E LK  +          N+ + I+ I N     +  
Sbjct: 633 DIEWIKE--------ELEKLRKQLEQLKNEMAELQGVKDLSNLKDQISSILNRLKVIEAS 684

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQ 471
                 + + E Q++ +  L + SL   E  Q   +        A  +++D  ++  +  
Sbjct: 685 LKDKVDYEIFEQQINYLKQL-ISSLGGKEITQQIIQPGLSAKEAALLKELDKRVSDLEDA 743

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
             ++  +++E K  ++  T     R    E
Sbjct: 744 IRELRRDLKEHKNDYADYTQKTNGRLDKIE 773


>gi|118388334|ref|XP_001027265.1| hypothetical protein TTHERM_00842490 [Tetrahymena thermophila]
 gi|89309035|gb|EAS07023.1| hypothetical protein TTHERM_00842490 [Tetrahymena thermophila SB210]
          Length = 1945

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 89/250 (35%), Gaps = 15/250 (6%)

Query: 276  QVQKSRLIEKIAE---LIIAKRIPLLEDIRDESA-------EDVRIVLFPKNRSLDPDLL 325
            ++ +  L+ ++ +   +I    I  ++ + +          ++ + +   +    D  L+
Sbjct: 1307 EINEQNLLVQLEQQSLMIKNMEIDQIKKLEEYKDLIQQIQLQNSQEISNLEREKQDMQLI 1366

Query: 326  MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
            +  +      ++    N       +  +         +    +     +      + I  
Sbjct: 1367 INKLESFVQSDSAQNFN----ENEKKKRSSTKGDYDSQHYQQQINDKDKEIESLNEKIAL 1422

Query: 386  RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
            + +++     A   + + I  ++ E + +   + + S    Q  AIL+ ++R L   +E 
Sbjct: 1423 QTQLIAKQRQAVETLKKEIIDLQKEHENRIKQLLQQSSNYVQEKAILHEQIRKLTIEKEE 1482

Query: 446  QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
            QI +  + +  ++ ++  +    ++   +   EI + K + +       ++    ++S+ 
Sbjct: 1483 QIIASQNLIEDQQNQLLDI-AKEREDIQKAKDEISQFKRLLNDDRIALEQQMNQVKISQD 1541

Query: 506  DKATLQQAMI 515
                 ++   
Sbjct: 1542 MLQREREQFE 1551


>gi|307170919|gb|EFN63022.1| Paramyosin, short form [Camponotus floridanus]
          Length = 735

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 42/277 (15%)

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAE------DVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           + E + +L  +  +  +  ++ E+ +        R+++      LD D LM+ +  LS  
Sbjct: 252 VTESLKKLSKSHELADIRKVQKETVQTLDDRAHGRLIVERTKALLDEDKLMQPLNKLSKE 311

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
              F    +   + +  Q       L      R      +    +Q + ++++I    L 
Sbjct: 312 LRGFEQKSSDYFLDKSKQTSIEIEQLNA----RVVEAETKLKTEVQRVKKKLQIQITELE 367

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA---------------ILNLRLRSLR 440
             L++     I    D  K +     +LTE Q                  I   RL+SL 
Sbjct: 368 LTLDVANKNNI----DLQKTIKKQSLTLTELQAHYDEVQRQLQVTLDQLGISQRRLQSLT 423

Query: 441 K-LEEYQ------------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             LEE +            ++ + +  ++   ++ ++  +      +I  E+  +   + 
Sbjct: 424 AELEEVRGNYESALRAKRIVEQQYEESVSRINELTTINVNIASSKAKIEQELTTLAGDYE 483

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
           + T   R      +  + +     + + E++   V I
Sbjct: 484 EVTKELRVSDERYQRVQTEFKHTVEILHEEQERIVKI 520


>gi|118372311|ref|XP_001019352.1| hypothetical protein TTHERM_00388480 [Tetrahymena thermophila]
 gi|89301119|gb|EAR99107.1| hypothetical protein TTHERM_00388480 [Tetrahymena thermophila
           SB210]
          Length = 454

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 92/261 (35%), Gaps = 24/261 (9%)

Query: 272 EIPYQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL----- 324
           E+ Y+ Q S L +KI  L    A++  +++ ++ E+A+     L   ++  +  +     
Sbjct: 90  ELSYENQISILNQKIDSLSKKCAQQDQVIQTMKKENAD-----LEESSKQANIKVAKLKR 144

Query: 325 -LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            + E              ++N      + +   +     E    R+         ++   
Sbjct: 145 NVTELEQKHEKDIKDLNESLNAKLKRELEEQENILNNAFERERIRQNSQIEEHKLKINEF 204

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK-L 442
             R++ +   L            IR+E   K ++   + L    +     L +  LR+ +
Sbjct: 205 QSRMKQVASEL----------EKIRSELHAKKLIADEWRLKYESLQRSTELEIYQLRREV 254

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + Y++     NL  E +++   L   K +  ++  E+R   E       +   +      
Sbjct: 255 DVYKLTPPQKNLEYEIKELTEKLQRKKLKIQKVREEVRVKTETIVVEKPVEVEKIVEVVK 314

Query: 503 SRADKATLQQAMIEKEPITVV 523
               +  +++    K+PI + 
Sbjct: 315 YIPVEKIVKEIQPPKQPIIIQ 335


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+AQ F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|152991417|ref|YP_001357139.1| hypothetical protein NIS_1676 [Nitratiruptor sp. SB155-2]
 gi|151423278|dbj|BAF70782.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 684

 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 7/208 (3%)

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK----EWLAHRREVLFRR 375
              + L+E I    D +       + +    +  ++     +     E      E L + 
Sbjct: 294 AISNNLLEKIKKYLDKKREKGELPSGIREQFIHDLLEKGECICGTKLEVGDFHYEHLKKL 353

Query: 376 SSFRMQAIDRRVEILKG--LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
               ++       I     L       DE   ++    + K  ++ +    E Q   I +
Sbjct: 354 LENTIKKNIEDNFINISGILENVIGYTDEFKKLLEELHQEKNELIKQRDSLEQQYLEIKD 413

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
            +L++   +   ++   L+ +  + ++I   L   K++ N++  E++EV+    K   L 
Sbjct: 414 -KLKNSDNINIKELGKRLEYVENKIKEIMETLGEKKEKLNRLYKELQEVENEIQKHQTLN 472

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +     E     +  L +   E E +T
Sbjct: 473 EKIALAEERVEIAQNILDELEYEYEFLT 500


>gi|146185520|ref|XP_001032012.2| UBX domain containing protein [Tetrahymena thermophila]
 gi|146142736|gb|EAR84349.2| UBX domain containing protein [Tetrahymena thermophila SB210]
          Length = 2004

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 81/249 (32%), Gaps = 17/249 (6%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLL-----------EDIRDESAEDVRIVLFPKNRSLDPDL 324
           Q +++ L E+I +L   +                ++  D +     ++L  +      + 
Sbjct: 658 QQEEAELKERIQKLKQDEEEESKQRQQRLQEQKKKEEEDAARIKQNLILEEETEKKRIEE 717

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384
           L            R            + ++  L  I K+      ++  +R+    +   
Sbjct: 718 LQNKKKKEQQELERIQNEYKKQKEEELERIAKLKEIKKQQEEEIEKLRLQRAREEEEKQK 777

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS-----LTENQVDAILNLRLRSL 439
           +  E+          + ++   I NED  K  + +  +         + +    L+   L
Sbjct: 778 KLQELENIKNEEENRLKKLKESIGNEDTNKTNLNNNQNAKFEEEERIKREKEEILKKLQL 837

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K E+ +++ E + +  E+E+   ++ +      Q   ++ E  +          ++T  
Sbjct: 838 EKAEKERLQQEYEKVKKEQEEQKRIV-NENLLLKQEKDKLLEEIQKLQNQKQFQVQKTNQ 896

Query: 500 CEVSRADKA 508
             +   D+ 
Sbjct: 897 QTIISNDQE 905


>gi|327349987|gb|EGE78844.1| GDP/GTP exchange factor Sec2p [Ajellomyces dermatitidis ATCC 18188]
          Length = 701

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                +    N++   +  +     LD  L        +   R      Q      +I  
Sbjct: 101 HHPDLSSEVANLSDKLIQAINYQTVLDDTLAATRQELEQAHMRVGQLEKQTRQYEEDITN 160

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR----------- 440
           G+LI  +++D+    +++E        SR +  E +  AI  L L +L            
Sbjct: 161 GVLIRRVDVDKEWTKLKDEA---AEQRSRRATIEKEKKAI-ELELENLTAALFEEANKMV 216

Query: 441 ---KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              +LE   ++   + L A+ +  + LL S ++Q +++   I+ +     +        T
Sbjct: 217 AAAQLERKNVERRNEQLRAQIQDNEMLLASQQEQLSELKTVIQNMNTDQDEIRSRTDAST 276

Query: 498 TFCEVSRADKATLQQA 513
           T        +      
Sbjct: 277 TPSSPGGTHQPISTID 292


>gi|261193671|ref|XP_002623241.1| GDP/GTP exchange factor Sec2p [Ajellomyces dermatitidis SLH14081]
 gi|239588846|gb|EEQ71489.1| GDP/GTP exchange factor Sec2p [Ajellomyces dermatitidis SLH14081]
 gi|239613830|gb|EEQ90817.1| GDP/GTP exchange factor Sec2p [Ajellomyces dermatitidis ER-3]
          Length = 701

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 18/196 (9%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                +    N++   +  +     LD  L        +   R      Q      +I  
Sbjct: 101 HHPDLSSEVANLSDKLIQAINYQTVLDDTLAATRQELEQAHMRVGQLEKQTRQYEEDITN 160

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR----------- 440
           G+LI  +++D+    +++E        SR +  E +  AI  L L +L            
Sbjct: 161 GVLIRRVDVDKEWTKLKDEA---AEQRSRRATIEKEKKAI-ELELENLTAALFEEANKMV 216

Query: 441 ---KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              +LE   ++   + L A+ +  + LL S ++Q +++   I+ +     +        T
Sbjct: 217 AAAQLERKNVERRNEQLRAQIQDNEMLLASQQEQLSELKTVIQNMNTDQDEIRSRTDAST 276

Query: 498 TFCEVSRADKATLQQA 513
           T        +      
Sbjct: 277 TPSSPGGTHQPISTID 292


>gi|160947507|ref|ZP_02094674.1| hypothetical protein PEPMIC_01441 [Parvimonas micra ATCC 33270]
 gi|158446641|gb|EDP23636.1| hypothetical protein PEPMIC_01441 [Parvimonas micra ATCC 33270]
          Length = 1178

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 18/285 (6%)

Query: 246 GRGGFRVRARWCVEEVGRGS---------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           GR G+ +  +  +EE+  G              +++I YQ  +S+     A+  + +   
Sbjct: 134 GREGYSIIGQGRIEEIINGKSEDRRAIFEEASGISKIKYQKNESQKKLFKAKDNLTRLRD 193

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           ++    +          F K +S      +  +  +   E                +   
Sbjct: 194 IIIQNENRYG-------FLKGQSTKAKKGIALLEDIEKAEFSISYKDYNNLNSNFNKYSE 246

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              I KE L    +             +    I   +      +D I     +    K V
Sbjct: 247 NLEINKEELFDINKEFENVKLKISPLKEELNNITNVIEKDSAELDRINKKKNDITNKKNV 306

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           ++ R        +  L L+   +  LE+  +  E+     +  + +S+L +     N++ 
Sbjct: 307 LIERNKFIRLNNEQSLKLKQEYIDNLEKINL--EISEQEKKISEKNSILKNYIDDKNKVK 364

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            E+ + KE+ S    +  +     E      + L+      E IT
Sbjct: 365 NELSKSKELLSSKVQILDKFFIEKEEIENKISDLETEKRANEIIT 409


>gi|71000559|ref|XP_754963.1| GDP/GTP exchange factor Sec2p [Aspergillus fumigatus Af293]
 gi|66852600|gb|EAL92925.1| GDP/GTP exchange factor Sec2p, putative [Aspergillus fumigatus
           Af293]
 gi|159127976|gb|EDP53091.1| GDP/GTP exchange factor Sec2p, putative [Aspergillus fumigatus
           A1163]
          Length = 705

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-AILNLR-- 435
            ++    R++ L+     Y +  E   +I+  D  + +   + +L E +   AI+     
Sbjct: 157 ELEQAQNRIKSLESENEKYRHDIEQAVLIKKADADREISQLKAALAEEKAQRAIVEKSKK 216

Query: 436 -----LRSLR--------------KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                L +L               KLE   ++ + + L A+ +  + LL S ++Q     
Sbjct: 217 TIEQELETLTAALFEEANKMVAAAKLEREAVEKKNEQLRAQVKDTELLLASHQEQL---- 272

Query: 477 CEIREVKEIFSKSTDLGRRRTTF 499
            E++ V +  + + D    RTT 
Sbjct: 273 AELKSVMQGMNIAKDDVEVRTTI 295


>gi|158337479|ref|YP_001518654.1| hypothetical protein AM1_4358 [Acaryochloris marina MBIC11017]
 gi|158307720|gb|ABW29337.1| hypothetical protein AM1_4358 [Acaryochloris marina MBIC11017]
          Length = 415

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 62/151 (41%), Gaps = 4/151 (2%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
            R   + + L    L IDE+ + + ++   +  + +    +  Q  A++ L+ + L    
Sbjct: 67  QRIQLLEQALEQCQLYIDELKSKLMDQAFLEEQLATTEEFSHIQKQAVITLQDQ-LT--N 123

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV- 502
             QI+ EL+NL   K  + + L            E+ ++++ F++      R     E  
Sbjct: 124 REQIQQELENLRQAKIDLTNRLADKDTSLRFQEAELSKLQDQFAEERTALERLQDQAERL 183

Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           S   +++ + A+ E +   +  +    +R+ 
Sbjct: 184 SLQIQSSQKTAVHETQQRIIAQTTAERLRTQ 214


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+L RLAQP+  R PL+   GNFG+   D A
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|238483057|ref|XP_002372767.1| bZIP transcription factor, putative [Aspergillus flavus NRRL3357]
 gi|317139621|ref|XP_001817646.2| bZIP transcription factor [Aspergillus oryzae RIB40]
 gi|220700817|gb|EED57155.1| bZIP transcription factor, putative [Aspergillus flavus NRRL3357]
          Length = 633

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++  + R EI         NID++IA   NE++ K +   +  L   Q      L  R  
Sbjct: 225 IRKKNARFEIP--AERTLSNIDQLIAQSTNEEEIKELKQQKRLLRNRQA----ALDSRQR 278

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
           +KL   +++ E          ++  L + + +  ++   +RE  E+F    +L   
Sbjct: 279 KKLHTEKLEEEKKQFTQIINDLEEDLQNMRLREAEL---MREKNELFGAQQELYHH 331


>gi|119493182|ref|XP_001263810.1| GDP/GTP exchange factor Sec2p, putative [Neosartorya fischeri NRRL
           181]
 gi|119411970|gb|EAW21913.1| GDP/GTP exchange factor Sec2p, putative [Neosartorya fischeri NRRL
           181]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-AILNL--- 434
            ++    R++ L+     Y +  E   +I+  D  + +   + +L E +   AI+     
Sbjct: 117 ELEQAQNRIKSLESENEKYRHDIEQAVLIKKADADREISQLKAALAEEKAQRAIVEKGKK 176

Query: 435 ----RLRSLR--------------KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
                L +L               KLE   ++ + + L A+ +  + LL S ++Q     
Sbjct: 177 TIEQELETLTAALFEEANKMVAAAKLEREAVEKKNEQLRAQVKDTELLLASHQEQL---- 232

Query: 477 CEIREVKEIFSKSTDLGRRRTTF 499
            E++ V +  + + D    RTT 
Sbjct: 233 AELKSVMQGMNIAKDDVEVRTTI 255


>gi|320157235|ref|YP_004189614.1| hypothetical protein VVM_03971 [Vibrio vulnificus MO6-24/O]
 gi|319932547|gb|ADV87411.1| hypothetical protein VVMO6_02389 [Vibrio vulnificus MO6-24/O]
          Length = 428

 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 11/120 (9%)

Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615
            A +  ++    +DG        +  +       +     L+      T   +D+  KLL
Sbjct: 240 SAQSKTQVAFACSDGVI----VVDTPNTTPQFTKLANPAGLDTGSRFGTVVGFDAADKLL 295

Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675
            ++ +  AF + + E+     K       SS+E+  L      D + VV  N  L +F+ 
Sbjct: 296 FLTRQAQAFYLAQGELKEVNWK-------SSQEEGALAHYAANDALVVVSSNGTLKVFNA 348


>gi|255570013|ref|XP_002525969.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus
           communis]
 gi|223534701|gb|EEF36393.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus
           communis]
          Length = 1163

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 10/186 (5%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
             ++  +     E     + V      S      +  I      E+        L     
Sbjct: 198 DAKLAEVSRKSSEIDRKSQDV--ESRESALRRERISFIAEKEAHESTLSRQREDLREWER 255

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
                 + I       R        +     I ++ E  K L  A   IDE   +++N++
Sbjct: 256 KLQEGEERI---SKGQRIINQREERANENDRILKQKE--KDLEEAQKKIDEAEVVLKNKE 310

Query: 412 KPKPVMVSRFSLTENQVDAI---LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
               + ++  +L E + DA    L ++   LR LEE     E   +    ++  ++L   
Sbjct: 311 DEMTIRLANLTLKEKEFDATGKKLEMKEEKLRSLEESLNDREKVEIQKLIDEHTAILEVK 370

Query: 469 KQQWNQ 474
           K+++  
Sbjct: 371 KREFEL 376


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 26/217 (11%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPL 341
           KI  L     +        E+  +  I   PK  ++D + +  ++     LS ++  +  
Sbjct: 9   KINPLNKKYMLISTTSEL-ENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGE 67

Query: 342 NMNV-------LSMGRVPQVMPLDGILKEWLAHRREV--------LFRRSSFRMQAIDRR 386
              +       + +  + ++M   GI K + + R+++              F  Q     
Sbjct: 68  KSFIVDTLVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMF 127

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSL----- 439
                  +     +++   I  ++ K K     R  L+E+Q+D  +N  + L  L     
Sbjct: 128 CHYYHDFIGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILC 187

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            KLEE          +     I+  L+S K  W +I 
Sbjct: 188 NKLEENNRMGWFQEEMESIVDINKYLHSPKDAWKRIK 224


>gi|125973444|ref|YP_001037354.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405]
 gi|125713669|gb|ABN52161.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405]
          Length = 1190

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 89/261 (34%), Gaps = 11/261 (4%)

Query: 269 VVTEIPYQVQKSRLIEKIAE----LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ E+  Q++  R   ++A+    L    ++  +    +  A     +   +        
Sbjct: 194 IIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKD 253

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM--QA 382
            ++S     +  T        +      ++        E+ A    +    S  R+  + 
Sbjct: 254 NIDSENKRLEEITSLNQTNLSILKDMEGRLEAAKQ---EYYAIDGNLEKSNSEIRLNQEK 310

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           I+     ++ L      IDE I  I  E+  K   +       N+  A L    + L+ +
Sbjct: 311 INNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAI 370

Query: 443 EEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++E  ++NL  E  ++  + +  K Q N I   I  +K+  +       + T   
Sbjct: 371 IATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEK 430

Query: 501 EVSRADKATLQQAMIEKEPIT 521
           +     K  L +++ +   + 
Sbjct: 431 DKECMKKEELSESIYKTNELI 451


>gi|163754567|ref|ZP_02161689.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
 gi|161325508|gb|EDP96835.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
          Length = 1141

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 23/241 (9%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E I +L   K +  L+  +DE      +    K +    +L       L     R   N 
Sbjct: 503 ETIKDL--DKSLEKLQKQQDE------LKKISKEQKEKSELNFNDRKKLEKFLQRQEQND 554

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            ++          L+   KE      +    +   R++   + +E  + L+     + E 
Sbjct: 555 QMMEKFSKQLQENLEDFQKEETKDDEDKELLKE--RLERQQKELEKNEKLMEELKKLAEK 612

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI-- 461
           I+    ++K    +  +   ++  +  IL L  R     +  +I+ EL  L  E+E++  
Sbjct: 613 ISEEELQEK-LEELGKQQQNSKKNLQQILELTKRYYVTKKAEKIQKELQELAKEQEELSK 671

Query: 462 ----------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
                        LN   +   +   E+ +  E   K  DL R++    ++ +  +    
Sbjct: 672 KSGDQNTKEQQEELNKKFEDLQKQMDELDKENEELRKPLDLERKKDEEEDIKQEQQEATD 731

Query: 512 Q 512
            
Sbjct: 732 D 732


>gi|145487610|ref|XP_001429810.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396904|emb|CAK62412.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1654

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 96/292 (32%), Gaps = 27/292 (9%)

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
                   +   +  V             EI  Q +   + +K+       +I  +E + +
Sbjct: 1057 ESQSKEIQQLQQKIVSIENENQQSRNTMEIQQQGKLQDMTQKL-----QIKIRTIEQLTN 1111

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            E       +   +  S      +  +      E     N     +  +   +       E
Sbjct: 1112 EKTALNDKIKEVECESNKFKQTINQLEQQ-CNEWSIKFNSLQSQIQCLTNNINEKDSELE 1170

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
            +       + +  + + Q +D+  EI K      + ID  I  ++  DK K +      L
Sbjct: 1171 F-------MQQEFNKQNQILDKSSEIWKK-ETDQMEIDNNILKLQINDKQKEIHKLEQRL 1222

Query: 424  T---------ENQVDAILNLRLRSL-RKLEEYQIKSELD--NLLAEKEKIDSLLNSGKQQ 471
                      E QVD  L L+L  L   L++    +  D   L  E  +++  ++S  ++
Sbjct: 1223 NASLNDLQQKEQQVDQ-LKLQLNHLNTNLQQQLELTSKDNSQLKKEISQLNQHIDSQHEE 1281

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
             +Q+  E+ + +    ++  + ++ T   E+     +   +   ++    V 
Sbjct: 1282 IDQMRVELDQKQSQVDENKSIVKKLTKQLELEIKQYSLHLKKYEDQHKKEVQ 1333



 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 80/203 (39%), Gaps = 19/203 (9%)

Query: 327  ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
              +  +   E +   N+      R+   M  +  ++E  +H  E + + ++   Q ID++
Sbjct: 1434 NDLQNIQVSEQQDKYNLLKDQFTRLESQMKQESQIREQYSHIAEKVSKENNELKQKIDKK 1493

Query: 387  VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
             +I+  L  A L  +E +  +   D+ K          + Q   I +++ + L KLE   
Sbjct: 1494 QQIIVQLEQALLQNEETLKNVH--DRAKE-------FCKQQEKEINDIKDQYL-KLEAEH 1543

Query: 447  ---------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
                      + E + +  +K++    +++ + +  ++  E++E  E  +KS +      
Sbjct: 1544 NAILSQNQEREDENEQMKDQKDQALMQMHALEDENGKLKKELQEQHEKLTKSNNERSMLY 1603

Query: 498  TFCEVSRADKATLQQAMIEKEPI 520
               E  + D A L       + I
Sbjct: 1604 KQIEEMQKDIAQLGGHNNPSQKI 1626


>gi|327287537|ref|XP_003228485.1| PREDICTED: pericentrin-like [Anolis carolinensis]
          Length = 1793

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 86/261 (32%), Gaps = 38/261 (14%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
            LI++I  L  AK     +  +D S              L+  + M  I +   +     
Sbjct: 201 DLIQEIEHLAKAKLEVQCQAEKDCST-------------LNAQIKMLEIELEEQISKNQN 247

Query: 341 LNMNVLSMGRVPQVM-PLDGILKEWLAH----RREVLFRRSSFRMQAIDRRVEILKGLLI 395
           L +  L +  + Q M  L+  LK           E    R  F+ +     +E+      
Sbjct: 248 LTVMSLEVTDLRQQMQSLERQLKNQRDFMDKQAVEREHERDEFQEEIQKLEMELKLTAKF 307

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY---------- 445
                  ++  + +E K K    +R  L + Q+   L+ +   ++KLE            
Sbjct: 308 QASGQSNLVDSLYSEIKEKTEDFNRLFLEKEQIQKDLDAQKDQIKKLEAQIRELELKNKE 367

Query: 446 ------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR----EVKEIFSKSTDLGRR 495
                 Q+  EL  +   + +++ +L S   +   +   +     + +++    T+   +
Sbjct: 368 ETNHANQLTQELQKMKKMEAELEQILESQALEIQNLKSVVECLHSDKEQMLKDKTEETEQ 427

Query: 496 RTTFCEVSRADKATLQQAMIE 516
                E  + +   L     E
Sbjct: 428 LRGIIEKLQKELELLTPTCQE 448


>gi|213419135|ref|ZP_03352201.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 62

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750
               +    I    R       +L   +G+RG  G+ + +G  R  + 
Sbjct: 1   MLPPQSTLTIHVGKRKIKLRPEELQKVVGERGRRGT-LMRGLQRIDRI 47


>gi|145505874|ref|XP_001438903.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406076|emb|CAK71506.1| unnamed protein product [Paramecium tetraurelia]
          Length = 539

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 12/238 (5%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
             L ++I  L+        +    +  +     +  K      + L  ++   +      
Sbjct: 269 QSLRQQIEFLVDENDKLTKQLNELKVTKRSNEFVEIKRLQQVIEELEVNLSRKTREIDEL 328

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             N              L  + +E   +      ++     Q      E     L    +
Sbjct: 329 MANSKGSLSLIQNLREKLKDVEEENHRYINIFFPKQKDIEQQTAKLLDE----FLQIKKD 384

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ID   ++ + E + +   +     +++QV  ++++  RS +K        EL  ++ +KE
Sbjct: 385 IDTYSSLFKMESQIREKALKSKDQSDDQVQKLVDMLGRSKQK------NKELQEIIKQKE 438

Query: 460 K-IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             I+ +L + +Q   +I   ++             + R    +V         Q M E
Sbjct: 439 SIINKILEAKRQNVEEI-EILKAEINTHKDKVQYEQIRVKEVQVQLDILEKKYQDMFE 495


>gi|256005340|ref|ZP_05430305.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           2360]
 gi|255990659|gb|EEU00776.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           2360]
          Length = 1210

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 89/261 (34%), Gaps = 11/261 (4%)

Query: 269 VVTEIPYQVQKSRLIEKIAE----LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ E+  Q++  R   ++A+    L    ++  +    +  A     +   +        
Sbjct: 194 IIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKD 253

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM--QA 382
            ++S     +  T        +      ++        E+ A    +    S  R+  + 
Sbjct: 254 NIDSENKRLEEITSLNQRNLSILKDMEGRLEAAKQ---EYYAIDGNLEKSNSEIRLNQEK 310

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           I+     ++ L      IDE I  I  E+  K   +       N+  A L    + L+ +
Sbjct: 311 INNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAI 370

Query: 443 EEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++E  ++NL  E  ++  + +  K Q N I   I  +K+  +       + T   
Sbjct: 371 IATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEK 430

Query: 501 EVSRADKATLQQAMIEKEPIT 521
           +     K  L +++ +   + 
Sbjct: 431 DKECMKKEELSESIYKTNELI 451


>gi|237795728|ref|YP_002863280.1| phage tail tape measure protein, family, core region [Clostridium
            botulinum Ba4 str. 657]
 gi|229264128|gb|ACQ55161.1| phage tail tape measure protein, family, core region [Clostridium
            botulinum Ba4 str. 657]
          Length = 1962

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 81/246 (32%), Gaps = 25/246 (10%)

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRI----------PLLEDIRDESAEDVRIVLF 314
               + V E  +    +   E I  L I  +            ++           R    
Sbjct: 1552 KKSLKVQENVFNNTINEYNEAIKRLSIDTKDLNQNLLNHQAIVILQGEKIKELQNRYKEL 1611

Query: 315  PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI-------LKEWLAH 367
             K      +  +++   L + +T      N +   +   +             +   +  
Sbjct: 1612 AKTFGYTAEETIKAKKSLEEAKTELINMSNAVDDAKQKIIDAQKEADKKVSDSINNMVDR 1671

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
             +  L +R    ++A +    I K L       DE I  I +    K   + +  + E++
Sbjct: 1672 IKSALKQRYEDELKAQEE--HINKELKELDRWKDESIKRIESFYDAKIEAIDKQLVEEDK 1729

Query: 428  VDAILNLRLRSLRKLEEYQIKSELDNLL--AEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
             D      L+ + +LE   ++ E +       ++++++LL   +++ +    ++ E KE 
Sbjct: 1730 ADKNAE-ELKKINQLE-TALEYEHNEFNKIEIQKELNNLLKEREKRIH--KEQLEEQKEQ 1785

Query: 486  FSKSTD 491
              K  +
Sbjct: 1786 LQKEKE 1791


>gi|227501098|ref|ZP_03931147.1| transketolase [Anaerococcus tetradius ATCC 35098]
 gi|227216683|gb|EEI82084.1| transketolase [Anaerococcus tetradius ATCC 35098]
          Length = 662

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TC 612
             +A T D  + +  DG  +  P   L   R     I L     +   +      +S T 
Sbjct: 455 LTYAMTHD-SIAVGEDGPTHE-PIEQLAMLRAIPNTIVLRPADANETRLAWKVALESKTS 512

Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            +++  ++ N   ++E+E + N  KG   +K S    + L+   TG  VA+  +  K L
Sbjct: 513 PVVIALTRQNVKNLKETENLDNIDKGAYIIKDSENPDLILIA--TGSEVALALDTAKAL 569


>gi|326920719|ref|XP_003206616.1| PREDICTED: a-kinase anchor protein 6-like [Meleagris gallopavo]
          Length = 2286

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 47/272 (17%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV---VTEIPYQVQKSRLIEKIAELIIAK 293
             I +             R   E        ++   + +I +Q     + EKI   +   
Sbjct: 727 SGIKKYTEGKSERTAATQRIENETSASNKSALIRQLMQDIQHQENYETIWEKIEGFV--S 784

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  L    +E+ E              P    +S+ +  +    F LN++     +   
Sbjct: 785 KLDELIHWLNEAMETT-------ENWTPPKAETDSLKLYLETHLSFKLNVDSHCALKEAV 837

Query: 354 VMPLDGILKEWLAHRREV-----LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           V     +L+  ++H+  +     +       +Q   +R      +L A   I   I    
Sbjct: 838 VEEGRQLLELIVSHKSGLKDMLQMIASQWKELQRQIKRQHSW--ILRALDIIKAEILATD 895

Query: 409 NEDKPKPV---MVSRFSLT--ENQVDAILNLRLR--------SLRKLEEY---------- 445
              + +       +   L   E Q DA+  + L+        S ++ EE+          
Sbjct: 896 VSAENEEGTGSPKAEVQLCYLEAQRDAVEQMSLKLYSEQYNSSSKRKEEFADMSKVHTVG 955

Query: 446 -----QIKSELDNLLAEKEKIDSLLNSGKQQW 472
                   SE   L      ++S++       
Sbjct: 956 SNGLLDFDSEYQELWDWLIDMESIVMDSHDLM 987


>gi|145515403|ref|XP_001443601.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410990|emb|CAK76204.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1837

 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 97/256 (37%), Gaps = 32/256 (12%)

Query: 276  QVQKSRLIEKIAELIIAKR--IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
            Q + +++I+ +       +  +        E+A   + V   K   L      E     +
Sbjct: 1408 QNKFTKIIQSLENANNQLKSQLEESSHQIQENAHKYQSV--QKQNDLQSIQFNEQQEKYT 1465

Query: 334  DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
             ++ +F          R+   M  +  ++E  +H  + + + ++   Q ID++ +I+  L
Sbjct: 1466 LLKEQF---------TRLESQMKQESQIREQYSHIADKVTKENNELKQKIDKKQQIIVQL 1516

Query: 394  LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ------- 446
              A L  +E +  +   D+ K          + Q   I +++ + L KLE          
Sbjct: 1517 ESALLQNEETLKNVH--DRAKE-------FCKQQEKEINDIKDQYL-KLEAEHNAILSQN 1566

Query: 447  --IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
               + E + +  +K++    +++ + +  ++  E++E  E  +KS +         E  +
Sbjct: 1567 QEREDENEQMKDQKDQALRQMHTLEDEIGKLKKELQEQHEKLTKSNNERSMLYKQIEEMQ 1626

Query: 505  ADKATLQQAMIEKEPI 520
             D A L       + I
Sbjct: 1627 KDIAQLGGHNNPSQKI 1642



 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 78/224 (34%), Gaps = 24/224 (10%)

Query: 322  PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA------HRREVLFRR 375
              + +       + E+        L   +  +    + +L+  +       +++E     
Sbjct: 1128 EKINLNDKIKEIECESNKNKQTICLLEQQQHESQNQNNLLQAQIQSLNNELNQKEQEIGF 1187

Query: 376  SSFRMQA----IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT------- 424
                +      +D+  EI K      + ID  I   +  DK K +      L        
Sbjct: 1188 LQQELSKQNQVLDKSSEIYKK-ETDQMEIDNNILKKQLSDKQKDIHKLEQKLNATLNDLQ 1246

Query: 425  --ENQVDAILNLRLRSL-RKLEEYQIKSELDNL--LAEKEKIDSLLNSGKQQWNQIACEI 479
              E Q+D  L L+L  L   L++    +  DNL    E ++++  + S  ++ +Q+  E+
Sbjct: 1247 LKEQQIDQ-LKLQLNHLNTNLQQQLELTTKDNLLLKKEIQQLNQHIESQHEEIDQMRIEL 1305

Query: 480  REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
             + +    ++    ++ T   E+     +   +   ++    V 
Sbjct: 1306 DQKQTQVDENKSAVKKLTKQLELEIKQYSLHLKRNEDQHKKEVQ 1349


>gi|281417644|ref|ZP_06248664.1| chromosome segregation protein SMC [Clostridium thermocellum JW20]
 gi|281409046|gb|EFB39304.1| chromosome segregation protein SMC [Clostridium thermocellum JW20]
 gi|316940319|gb|ADU74353.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           1313]
          Length = 1190

 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 89/261 (34%), Gaps = 11/261 (4%)

Query: 269 VVTEIPYQVQKSRLIEKIAE----LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
           ++ E+  Q++  R   ++A+    L    ++  +    +  A     +   +        
Sbjct: 194 IIAELENQLEPLREQSEVAKRYLGLRETLKVLEVNVYIENIARYKEKIKELEENYASVKD 253

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM--QA 382
            ++S     +  T        +      ++        E+ A    +    S  R+  + 
Sbjct: 254 NIDSENKRLEEITSLNQRNLSILKDMEGRLEAAKQ---EYYAIDGNLEKSNSEIRLNQEK 310

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           I+     ++ L      IDE I  I  E+  K   +       N+  A L    + L+ +
Sbjct: 311 INNLFSNIERLDGEIAEIDEKIKTILEEEASKNSKIVYLQERYNEYSAKLEEAEKKLQAI 370

Query: 443 EEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                ++E  ++NL  E  ++  + +  K Q N I   I  +K+  +       + T   
Sbjct: 371 IATLNENERHIENLKTEIMEMLDIQSDKKTQINNIKNHIEGIKKRQANIDKEVYQLTLEK 430

Query: 501 EVSRADKATLQQAMIEKEPIT 521
           +     K  L +++ +   + 
Sbjct: 431 DKECMKKEELSESIYKTNELI 451


>gi|7497393|pir||T19923 hypothetical protein C44C10.2 - Caenorhabditis elegans
          Length = 732

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 91/221 (41%), Gaps = 16/221 (7%)

Query: 284 EKIAEL-IIAKRIPL-LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           EK+++L +  +++   +    DE+    R++L  K +      +  S    + M+    +
Sbjct: 187 EKVSKLAVENQKLKNKMAQKSDETDSAYRMILELKKKHEQELQMKNS----TIMKLEDNV 242

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGL 393
             N  S  +  ++   +  LK+W+A + + +   +   ++   + +E        I K  
Sbjct: 243 KFNNSSNEQFSKMTTENQQLKDWMATKTKEVEHAAKMMLELKQKHIEELQMKTTQITKLE 302

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
               LN + +  I    ++   +       T+ +   I  ++ +   + E + + S +  
Sbjct: 303 NDVKLNGNFMDHISELTEENHNLKEQLKQKTDAETKMIAEMKKKH--RGERHYMNSRITK 360

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           L    E  D+ L+  +   N++  ++ E+ EIF ++ D  R
Sbjct: 361 LEDALEYKDNQLSKREIAHNKLLDQLSEITEIFRQTADETR 401


>gi|229086527|ref|ZP_04218699.1| Arginine decarboxylase [Bacillus cereus Rock3-44]
 gi|228696844|gb|EEL49657.1| Arginine decarboxylase [Bacillus cereus Rock3-44]
          Length = 483

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 98/311 (31%), Gaps = 9/311 (2%)

Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285
             +G   +     I  +  +  G      +  +EE       +V+    +       +++
Sbjct: 116 IFSGAKPIFIHPEIDPNLGISHGITIHSVKKALEEHSDAKGLLVINPTYFGFAAD--LQQ 173

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I +L  +  IP+L D            L         D+   S+  L    T+  +    
Sbjct: 174 IVKLAHSYDIPVLVDEAHGVHIHFHDELPMSAMQAGADMAATSVHKLGGSLTQSSILNVR 233

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
             +  V  V  +  +L         ++      R +      E++   +    ++   + 
Sbjct: 234 EGLVNVKHVQSIISMLTTTST-SYILMASLDVARKRLATEGKELITKTIQLAEHVRNTVN 292

Query: 406 IIRNEDKP-KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            I N   P K ++    + + +    I++++   +   E      E  N+  E   + ++
Sbjct: 293 DIENLYCPGKEMLGMDATFSYDPTKLIVSVKDLGITGHEAELWLREHYNIEVELSDLYNI 352

Query: 465 L-----NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           L        +++ N +   +RE+   F    D G +             + + A   +  
Sbjct: 353 LCLITLGDTEEETNILIEALRELATTFKDRADKGVQVQVEIPEIPVLALSPRDAFYSETE 412

Query: 520 ITVVISNRGWI 530
           +    +  G I
Sbjct: 413 VIPFENAAGRI 423


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 25/198 (12%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMNV-------LSMGRVPQ 353
           E+  +  I   PK  ++D + +  ++     LS ++  +     +       + +  + +
Sbjct: 10  ENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKK 69

Query: 354 VMPLDGILKEWLAHRREV--------LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +M   GI K + + R+++              F  Q            +     +++   
Sbjct: 70  IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSL-----RKLEEYQIKSELDNLLAEK 458
           I  ++ K K     R  L+E+Q+D  +N  + L  L      KLEE          +   
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESI 189

Query: 459 EKIDSLLNSGKQQWNQIA 476
             I+  L+S K  W +I 
Sbjct: 190 VDINKYLHSPKDAWKRIK 207


>gi|70940701|ref|XP_740732.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518648|emb|CAH81733.1| hypothetical protein PC000787.04.0 [Plasmodium chabaudi chabaudi]
          Length = 300

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 9/177 (5%)

Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV-SSKGNAFIVEESE 630
           AY L    + +     + I +   +  +  I     Y+   K L+V S  G   I+    
Sbjct: 1   AYLLNVSEIQTSLYDSKGIPISQLIKCSTTITGLAKYEQDKKYLIVCSENGKMKIINNDV 60

Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            +   +KG    K             + D+  V  +N  ++ F +  +    +   G + 
Sbjct: 61  FLKKKKKGIKLFKNKKNIFFNYCN--SNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKC 118

Query: 690 QSY-KDGGISDVICFKICE----GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741
            S  KD  + D+I ++        L  I  +   + +        + K+ G G  + 
Sbjct: 119 MSLKKDDKVVDLISYENNPENLKNLKIIFLSKNGHGKMIGLDEIKVQKKRGKGFKIM 175



 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               + ++ D  ++ + +G     P  +L   + +    + +  L  +  +V    Y++ 
Sbjct: 78  IFFNYCNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCM-SLKKDDKVVDLISYENN 136

Query: 612 C------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  K++ +S  G+  ++   EI    ++GK F
Sbjct: 137 PENLKNLKIIFLSKNGHGKMIGLDEIKVQKKRGKGF 172


>gi|145515205|ref|XP_001443502.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410891|emb|CAK76105.1| unnamed protein product [Paramecium tetraurelia]
          Length = 901

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 101/314 (32%), Gaps = 22/314 (7%)

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           D      I E ++++       +  +       ++E+      I    +  +  K +L  
Sbjct: 315 DSKWMKQIQEKKKNVENQLNKYKKEYNQEIYQKIQEID--QENIRKLRLEQEAIKRKLTN 372

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           +  ++    +   + D+++E+   +R +        DP      +     ++        
Sbjct: 373 EFDKVKREYKFE-IVDLQEENQRMIRSIKEEIRSQYDPKFNQSQLTFNDQLQNIELSESQ 431

Query: 345 VL---------SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +L               +      + ++     +++  +  +F +Q  ++  E+ + L  
Sbjct: 432 ILQSQIFEYKNIDIEQKKQENAKRVAQQNEKFTQQLQNQLINFEVQKKEKYQEMKRMLED 491

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                 E I     +   K +   +     +  NQ  +++      +++++  + + E  
Sbjct: 492 TQRVKLEKIQKDYEKKTGKILGNGKEIDLCMDINQTKSLIQELKEEIKQMKRKKGEMEEK 551

Query: 453 --NLLAEKEKIDSLLNSGKQQWNQIACEIREVK---EIFSKSTDLGRRRTTFCEVSRADK 507
             +L     K D  L +  +Q + I  E+  ++   E +        +     E      
Sbjct: 552 VTSLNVVISKYD--LQNELKQRDVIKFELDRLQFLVEQYKLDDKKVEKELELLEQQFQSS 609

Query: 508 ATLQQAMIEKEPIT 521
               Q   +++ + 
Sbjct: 610 IRQNQEFNQRQQMM 623


>gi|123453480|ref|XP_001314724.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121897362|gb|EAY02485.1| hypothetical protein TVAG_020380 [Trichomonas vaginalis G3]
          Length = 1214

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 98/291 (33%), Gaps = 28/291 (9%)

Query: 221 IIGPDFPTGGIIVESR--ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278
           I    F              I +  R  +       +  +E +      +   +  ++ +
Sbjct: 666 IPCQQFFLVPQSRYDELQHGIEKLKRDIQSQQNDYEQKTIESLRAHQKNLDELQRQHREK 725

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K +L ++I  L+ A        + D + +   I    +   ++   ++ +++       R
Sbjct: 726 KEKLNQQIEGLMAA--------MNDSTIKAALIYQNMEAAHMNEAKVLTNLYEQKLSLER 777

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              +                 +     ++   +   +  ++    +   +I         
Sbjct: 778 SKCDGL------------QKEVEDLKCSYEERIYLLQQQYKSSLEELGNKIYSKQSQLQN 825

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR----SLRKLEEYQIKSELDNL 454
           ++DE    I+ ED      +    +  +Q   +++L        L  LE+  + ++++ L
Sbjct: 826 DLDETNKTIQKEDDDMSDRMIALEVEFDQDRMMIDLEFHNKAIELHNLEKE-LNAKVEEL 884

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEI-REVKEIFSKSTDLGRRRTTFCEVSR 504
             E +K   ++++  ++ N +  E  +E KEI ++   L  + +   +   
Sbjct: 885 ATEIDKQIQIISNDNERLNTLKDERAKEEKEIKAQQHTLECKTSELHDREE 935


>gi|195129435|ref|XP_002009161.1| GI11414 [Drosophila mojavensis]
 gi|193920770|gb|EDW19637.1| GI11414 [Drosophila mojavensis]
          Length = 651

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 227 RRWIEKENKTARIKRKKEEMTRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 286

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 287 AQ-----KAEQERAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKVK 340

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 341 DCKYYAKN 348


>gi|325694304|gb|EGD36218.1| surface protein D [Streptococcus sanguinis SK150]
          Length = 1382

 Score = 42.4 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 83/295 (28%), Gaps = 20/295 (6%)

Query: 240 VESYRLGRGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +SY       + + +  +E   +      I + E  YQ   +   E++AE+    +   
Sbjct: 371 KQSYETSLAKIQEQNK-EIEAQNLAVQKKNIALKEQ-YQADLAAYQERLAEIRQKNQAAE 428

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF----PLNMNVLSMGRVPQ 353
            +     +A                     ++        R               +   
Sbjct: 429 KDYESKLAAYQKNRSEIEAANDAKARDHQAALTAYQSELERVQAENKKRQTAYETEKAEV 488

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID--EIIAIIRNED 411
            +    I  E    R++   ++  ++ Q      ++ +       + +  E   +   E 
Sbjct: 489 TVRNAAIESENAQIRQQNQEKQELYKNQLAQYEQDVARITESNQKSREAYEEALLTYQEA 548

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +    ++  L   Q D  L     +L ++E    +         KE  ++ L +   Q
Sbjct: 549 TARIETENKNKLAAYQAD--LATYQANLARIEAENQR--------LKEDYEANLAAISAQ 598

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              I  E   +KE  ++         T  + +        Q    K+     +S 
Sbjct: 599 NAVIEQENASIKEKNARLKAAYDTAKTKYDAALVTFERELQEAEAKKNEEGYLSK 653


>gi|198431307|ref|XP_002121687.1| PREDICTED: similar to MGC68950 protein [Ciona intestinalis]
          Length = 1248

 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 99/322 (30%), Gaps = 35/322 (10%)

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
               E  E+I    +  RG  +   +  ++ +        +  +I  Q ++ R I+K  +
Sbjct: 196 KEWKEKYETIRIKRQEDRGKLKEYEKIRIQFQQLTDVKTRMSDQIQDQAKQIREIKKELQ 255

Query: 289 LIIAKRIPLLEDIRD----------------ESAEDVRIVLFPKNRSLDP-DLLMESIFM 331
             +  +   ++++ D                E  E ++  +      ++     +E +  
Sbjct: 256 ETVEDKARYVDEMSDVHETVEMATLDKEMAEEKVESMQREIEALTDKVEELQTDLEIMKA 315

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA---------HRREVLFRRSSFRMQA 382
             +                  Q   L   L              H  E    + +  ++ 
Sbjct: 316 EIEESGTDGAASTYQVKQMEEQNNKLKEALVRMRDLSTAEKAEYHNLEKQMEKKNKELKE 375

Query: 383 I-DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           I  ++ ++   L +A   +DE+   +      + ++ +       Q + I ++ L  +  
Sbjct: 376 ITQKKDKLAAALEVAESTVDELKEQVDIAQGAEEMVETLTEKNLEQEEKIADM-LEQIHD 434

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQW----NQIACEIREVKEIFSKSTDLGRRRT 497
           LE     +E   L      ++  L            +I  ++    ++     D  ++  
Sbjct: 435 LELINEMNE--ELQENARDLELELREESDMMRSKVREIERKLLASSDVVGDYQDTIQKFR 492

Query: 498 TFCEVSRADKATLQQAMIEKEP 519
              +  +     L+ +  E+E 
Sbjct: 493 KLVQELQDANHELRSSQSEQEE 514


>gi|124513274|ref|XP_001349993.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
 gi|23615410|emb|CAD52401.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
          Length = 3519

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 23/242 (9%)

Query: 283  IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP---DLLMESIFMLSDMETRF 339
            ++K  E +I +R  L+++   +  E     +     ++D    D     I    +++   
Sbjct: 1918 LKKYHEHVIQERDQLIKEKESDKQE-----IEYLKNNVDVLKIDKSNYMIEKNDNIDKIK 1972

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             L      +           I KE      +          + +   ++I+K      LN
Sbjct: 1973 KLEEEKKKLEVDINNTNDILIYKEENILYEKNKRHEERKEKETLKNELDIIKKEYNELLN 2032

Query: 400  I-DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL----------RLRSLRKLEEYQIK 448
              DE   II  E K K ++ +   + + + + +LN           + + + K E   IK
Sbjct: 2033 KYDE--NIINEERKEKEILKNELDIIKKEYNELLNKYDENIINEERKEKEILKNELDIIK 2090

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
             E D LL + +   +++N  +++   +  E+  +K+ +++  +         E++     
Sbjct: 2091 KEYDELLNKYDD--NIINEERKEKETLKNELDIIKKEYNELLNKYDENVINEEINNMKNI 2148

Query: 509  TL 510
             +
Sbjct: 2149 LI 2150



 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 79/202 (39%), Gaps = 20/202 (9%)

Query: 323  DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
            + L  S+   ++   ++  ++       + +       ++    +   +   +S++ ++ 
Sbjct: 1905 NKLKNSLEEKNEELKKYHEHVIQERDQLIKEKESDKQEIEYLKNNVDVLKIDKSNYMIEK 1964

Query: 383  IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL-NLRLRSLRK 441
             D              NID+I  +   + K +  + +   +   + + IL     R   +
Sbjct: 1965 ND--------------NIDKIKKLEEEKKKLEVDINNTNDILIYKEENILYEKNKRHEER 2010

Query: 442  LEEYQIKSELDNLLAEKEKI-----DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             E+  +K+ELD +  E  ++     ++++N  +++   +  E+  +K+ +++  +     
Sbjct: 2011 KEKETLKNELDIIKKEYNELLNKYDENIINEERKEKEILKNELDIIKKEYNELLNKYDEN 2070

Query: 497  TTFCEVSRADKATLQQAMIEKE 518
                E    +    +  +I+KE
Sbjct: 2071 IINEERKEKEILKNELDIIKKE 2092


>gi|37522891|ref|NP_926268.1| chromosome segregation SMC protein [Gloeobacter violaceus PCC 7421]
 gi|35213893|dbj|BAC91263.1| glr3322 [Gloeobacter violaceus PCC 7421]
          Length = 1165

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 19/228 (8%)

Query: 260  EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            E     W + +      +QKS L E++A+      +    D  D+  E  +     + R 
Sbjct: 801  ETEVRRWELQLRHAEADLQKSHLDEQLAQEKRQNLLSRRLDWEDQKVEFGQREEESRTRL 860

Query: 320  LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             + D ++  +                       +++ +        AH R +  R+    
Sbjct: 861  AEFDRVIAELAAQ--------------VAELEERLVDIKRERDRLEAHGRALQQRQGQLN 906

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q    R+   +         + +  +    +    V      L+  Q+ A    + R L
Sbjct: 907  LQREQERLHQGQRAAALAAAQERLDELGPPAED---VPPPPEDLSLEQLQATRLRKQRRL 963

Query: 440  RKLEEYQIK--SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
              LE   +    E D     + ++   L + +++ +++   I +   +
Sbjct: 964  EALEPVNMLAIEEYDRTAERQGELSEKLATLQRERSELLLRIEDCDTL 1011


>gi|328863809|gb|EGG12908.1| hypothetical protein MELLADRAFT_58819 [Melampsora larici-populina
            98AG31]
          Length = 1803

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 107/341 (31%), Gaps = 45/341 (13%)

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
            I ES R  +G         + ++  G   I +           +++K++E +  +   L+
Sbjct: 1172 IEESQRKEKGKDLEIILRSIRDLKNGEEEIEM-----------MMKKLSEAVKPQIYQLI 1220

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESI------------FMLSDMETRFPLNMNVL 346
            +   D+S     IV   K      + LM+ +                D +          
Sbjct: 1221 DLTSDKSETAGLIVQELKP---SLEDLMKRLIGELRVENEKIKEKRIDEDEHRESLKVGE 1277

Query: 347  SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
             M  +   + L  +       ++          +   + R E+L+        +  +   
Sbjct: 1278 EMIELITQLDLKSLNFYQDISQQIGSTMNEISELIKSEIRREVLESKENEIQELRNVKNE 1337

Query: 407  IRNED-KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK--EKIDS 463
            +     K +       S    + + I+  + +  R+LEE + K  +D L  E+  ++ + 
Sbjct: 1338 LELGLLKARADHGRVRSERAVEKEKIMEEKSKVERELEELRKKKRMDELEIERFRKEKEE 1397

Query: 464  LLNS-------------GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT- 509
            +  S              + +  ++   +    E F         +        A+    
Sbjct: 1398 MEGSRRVQGVEKESVERERDRLKELVARLESRCEGFEVKGREWETKRILQTEEIAELKVK 1457

Query: 510  --LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
              + ++  +     + +S  G+ R  +  ++DL     KE 
Sbjct: 1458 NRMIESNNKSNERGLELSQNGYERLQEVRNLDLIRYQTKED 1498


>gi|223994899|ref|XP_002287133.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976249|gb|EED94576.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 799

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               ++  L   L        + +  R +  +QA+ +  E    L     ++   +  ++
Sbjct: 644 HYEGEITRLRADLASSRMQNIQHMSDRETREIQALRKDSER---LRNDLDHLTSALVGVQ 700

Query: 409 NEDKPKPVMVSRFSLTENQ-VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
            E + K   +S+  L E      +L  +LRS  ++E    +  +D+L  +   +     +
Sbjct: 701 TE-EAKQRSLSQRMLREQSIAKELLE-KLRSETRIENKTCRQRMDDLDLQIADLK---AN 755

Query: 468 GKQQWNQIACEIREVKEIFSKST 490
            + ++     E     +IF  + 
Sbjct: 756 LRVRYEIAKDEELSQAQIFGTAG 778


>gi|106073427|gb|ABF82016.1| M protein [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 495

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 82/206 (39%), Gaps = 6/206 (2%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           K+ E +  +     E +  + +  V   +  +N+ L+ + L   +   +D+  +      
Sbjct: 87  KLLEELNDQFEEYYEKVVGDDSRRVFAKVIEENKGLN-EKLSGLLEKSNDLAKKLKEKEE 145

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI- 403
            L      + +      ++   H  E + R           + E+   +  A   ID + 
Sbjct: 146 ELKNKEAERDLEHAAYARDRKEH-EEYVRRVGLLLEDRAKEKQELQSSVEQAKKKIDSLN 204

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI--KSELDNLLAEKEKI 461
             + + E++     +++  + ++  D +   +   + KLEE     K+EL++L ++ E +
Sbjct: 205 QELAQKEEELAKEKLAKQGIIDSTSDYVTE-KESKIAKLEEEIQTNKAELESLNSQLESL 263

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFS 487
           +S L+    + + +  E+   + ++ 
Sbjct: 264 NSNLDKKTSEIDNLKQELTRKENMYE 289


>gi|189237641|ref|XP_966597.2| PREDICTED: similar to MGC89351 protein [Tribolium castaneum]
          Length = 1691

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 87/261 (33%), Gaps = 13/261 (4%)

Query: 232 IVESRESIVESYRLGRGGFRVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
              S E I  +YR          R  + EEV           + Y+   + +  +  + +
Sbjct: 92  YRASEEIIKTAYRKKVLKHHPDKRKALGEEVKADDDYFTCITMAYETLGNPVKRRSYDSV 151

Query: 291 I---AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET--RFPLNMNV 345
                  +P   D++ +  E         +R  +   + +     S  E   RF      
Sbjct: 152 DPEFDNNVPSGADLKKDFYETFSYFFDLNSRWSEKTNVPKLGGPDSSREEVERFYSFWYD 211

Query: 346 LSMGRVPQVMPLDGILKEW-LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
               R       +   K      RR V     + R++     +  ++ L+    N D  I
Sbjct: 212 FKSWREYSYEDEEDKEKCQDRDERRYVDKLNKAERLRKKKEEMSRIRSLVDIAYNNDPRI 271

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           A I+ E+K + +   R   T  Q       R+     L E Q+  E     AE+ +I++ 
Sbjct: 272 AKIKQEEKDRKLAAKRAKQTAAQAKKEEEERI-----LREAQLLKEQAE-AAERARIEAK 325

Query: 465 LNSGKQQWNQIACEIREVKEI 485
               + Q   +  E + ++++
Sbjct: 326 RQEREAQKRALKKERKALRDL 346


>gi|307688009|ref|ZP_07630455.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
          Length = 35

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654
            G  F+   ++++A  R GK  + +     +   V
Sbjct: 1   AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 35


>gi|260064069|ref|NP_081065.2| WD repeat-containing protein 65 [Mus musculus]
 gi|300669700|sp|Q9D180|WDR65_MOUSE RecName: Full=WD repeat-containing protein 65
 gi|123211835|emb|CAM16898.1| WD repeat domain 65 [Mus musculus]
 gi|123231542|emb|CAM27667.1| WD repeat domain 65 [Mus musculus]
 gi|123294421|emb|CAM15602.1| WD repeat domain 65 [Mus musculus]
          Length = 1249

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 83/269 (30%), Gaps = 30/269 (11%)

Query: 246 GRGGFRVRARWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEK-IAEL----IIAKRIPLLE 299
            +    +  +  VEE+     + + + ++ Y  +   L +K I E+       + +   +
Sbjct: 695 EKAQIMLELKTRVEELKMENEYQLRLKDMNYTEKIKELTDKFIQEMESLKTKNQVLKTEK 754

Query: 300 DIRDESAEDVRIVLFPKNRSL-------DPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
           + +D S  +    L  K           +   L+       +++ +              
Sbjct: 755 EKQDISHRERLEELVDKQTRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRD 814

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
                   L+E        L  ++    +A +   + L+        I+E       + K
Sbjct: 815 NDETKSQALEELTEFYEAKLQEKTGLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIK 874

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ---IKSELDNLLAEKE-------KID 462
            K     R            NLRL+    +   +   ++ E++    + E       K+ 
Sbjct: 875 TKYERKLRDEKES-------NLRLKGETGIMRKKFSSLQKEIEERTNDIELLKSEQMKLQ 927

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            ++ S ++    +  EI+E  E       
Sbjct: 928 GIIRSLEKDIQGLKREIQERDETIQDKEK 956


>gi|268319231|ref|YP_003292887.1| chromosome partitioning protein Smc [Lactobacillus johnsonii
           FI9785]
 gi|262397606|emb|CAX66620.1| chromosome partitioning protein Smc [Lactobacillus johnsonii
           FI9785]
          Length = 1186

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 21/208 (10%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            EL+   R   L    DE    V +            LL      L D+ T F  +    
Sbjct: 80  VELVFDNRDHQLAYDNDE----VVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMSS 135

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA- 405
               +     +D IL      RR +         +     +   +   IA   +D+  A 
Sbjct: 136 DSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKEIALKQLDKTNAN 187

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +IR  D  K +      L E    A         L+ +L+ L  LE   +  E   +  +
Sbjct: 188 LIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKK 247

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 +LN    +  Q   ++ E ++ 
Sbjct: 248 AAANQGILNKLDDEVKQSQSDLEEKRKQ 275


>gi|195438675|ref|XP_002067258.1| GK16278 [Drosophila willistoni]
 gi|194163343|gb|EDW78244.1| GK16278 [Drosophila willistoni]
          Length = 5640

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 429 DAILNLRLRSLRK---LEEYQIKSELDNLLAEKEKIDSLLN----SGKQQWNQIACEIRE 481
           DA    +L+ L     LE  + + ELD+L  E+E +  +         ++  QI  E+RE
Sbjct: 884 DATAAKKLQELTASQELELAEKQRELDDLKEEQEVVREIEAVFSRDEMKRQQQIKAELRE 943

Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           + +  S +           E    ++ T    + ++  +T
Sbjct: 944 MAKQDSTTEADEEEEYLIIEKEEVEQYTEDSIIEQESSMT 983


>gi|21930292|gb|AAF23015.2| ninein [Homo sapiens]
          Length = 2096

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 608 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 667

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 668 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 724

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 725 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 782

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAI---IRNEDKPKPVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +     IR              +TE    A+ +L
Sbjct: 783 HTLEKEELRKELLEKHQRELQEGREKMETECNIRTSQIEAQFQSDCQKVTERCESALQSL 842

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 843 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 902

Query: 486 FSKSTD 491
             K+  
Sbjct: 903 LEKTYK 908


>gi|84995560|ref|XP_952502.1| hypothetical P-, Q-rich protein family protein [Theileria annulata
           strain Ankara]
 gi|65302663|emb|CAI74770.1| hypothetical P-, Q-rich protein family protein, putative [Theileria
           annulata]
          Length = 1292

 Score = 42.1 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 85/230 (36%), Gaps = 16/230 (6%)

Query: 279 KSRLIEKIAELI------IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
           K ++I+K+   +      + +   +L  + DE  +            +D  ++   I  L
Sbjct: 582 KHKIIQKLERQVILKRKTLKRLYKVLRPLEDELYQHGIQEFSKIKDKID--IINSKIERL 639

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF--RMQAIDRRVEIL 390
               + F     +  + +         + K       ++  R+  +  ++  +   +E L
Sbjct: 640 --QYSVFQFKEVIKILKKFSHNESDKELNKVRKDKIEDLKKRKQVYSNQLAELQAELEKL 697

Query: 391 KGLLIAYLNIDEIIAIIRNE--DKPKPVMVSRFSLTENQVDAIL-NLRLRS-LRKLEEYQ 446
           +       N  EI  I++ E  DK K  +          +D++  ++     L K E+ +
Sbjct: 698 EEENSDETNSGEIDGILKREMEDKKKKEIEIERKRMYRGIDSLHFDINHYKNLIKFEKQK 757

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            K   +  L++  K +++L + ++   Q   ++ E +  F KS      R
Sbjct: 758 TKGNKNAKLSKIRKYETILEARQKLLKQKEKDLLEFEARFRKSITPSSDR 807


>gi|224109820|ref|XP_002315323.1| predicted protein [Populus trichocarpa]
 gi|222864363|gb|EEF01494.1| predicted protein [Populus trichocarpa]
          Length = 1067

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 16/187 (8%)

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
            L++ +        R    +N+           +     E   +++ +      +  +  
Sbjct: 587 ELIKQLENECARCERAEERLNLTKNLLGDYQKSIKQHEVENSVYQKALADTTQLYEKKIA 646

Query: 384 DRRVEI---LKGLLIAYLNIDEIIAIIRNED----KPKPVMVSRFSLTEN-QVDAILNLR 435
           +   ++      L  A   +D    ++ ++       K     R  L    Q        
Sbjct: 647 ELIKQVEDEHTRLEGAEEQLDLANKLLSDQQHLMQDLKETAELRMKLQRICQAHESAQTE 706

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-------EVKEIFSK 488
           L+SL KLE   +  E   L  E   +   L + ++Q   I  E+        E  + F  
Sbjct: 707 LQSL-KLEHKNLSREKAILSEELHDMKQALAAEEKQRKSIEHELDKLKKSAPESDKDFED 765

Query: 489 STDLGRR 495
               G+ 
Sbjct: 766 KKPFGKE 772


>gi|42519392|ref|NP_965322.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC
           533]
 gi|41583680|gb|AAS09288.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC
           533]
          Length = 1186

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 21/208 (10%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            EL+   R   L    DE    V +            LL      L D+ T F  +    
Sbjct: 80  VELVFDNRDHQLASDNDE----VVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMSS 135

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA- 405
               +     +D IL      RR +         +     +   +   IA   +D+  A 
Sbjct: 136 DSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKEIALKQLDKTNAN 187

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +IR  D  K +      L E    A         L+ +L+ L  LE   +  E   +  +
Sbjct: 188 LIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKK 247

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 +LN    +  Q   ++ E ++ 
Sbjct: 248 AAANQGILNKLDDEVKQSQADLEEKRKQ 275


>gi|27085395|gb|AAN85373.1| KAR3 [Candida albicans]
          Length = 687

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 25/205 (12%)

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +   L+   L   +   +        N   L        + +  +       +  + 
Sbjct: 78  IDLEQLKLNATTLRNELEKQTYENFTIQSNYQNLERILNDLNLKIGELNSYK---QSSLD 134

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------PVMVSRFSLT 424
               +F +     ++   + L     +I + +  I  E + K           +++    
Sbjct: 135 ALIKNFELNNHQLKMNHQEKLNNLKEDITKQVDKILTEKQHKYEVEISNLNKEINKIKSD 194

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQ 474
               ++ LN   R L +L+E Q K EL          +N+  E   I+SLL S  +Q   
Sbjct: 195 RKNTESDLN---RRLIQLKEDQHKQELMMVGRVNDDINNMKKEIADINSLLESKTKQIEL 251

Query: 475 IAC-EIREVKEIFSKSTDLGRRRTT 498
           I   EI        K T L  + T+
Sbjct: 252 IKSVEIEGASNKVDKFTLLLDQLTS 276


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI 112
           A +VGEV+GK HPHGD S+YD+LVR+A  F  R PLI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|329667083|gb|AEB93031.1| chromosome partitioning protein Smc [Lactobacillus johnsonii DPC
           6026]
          Length = 1186

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 21/208 (10%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            EL+   R   L    DE    V +            LL      L D+ T F  +    
Sbjct: 80  VELVFDNRDHQLASDNDE----VVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMSS 135

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA- 405
               +     +D IL      RR +         +     +   +   IA   +D+  A 
Sbjct: 136 DSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKEIALKQLDKTNAN 187

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +IR  D  K +      L E    A         L+ +L+ L  LE   +  E   +  +
Sbjct: 188 LIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKK 247

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 +LN    +  Q   ++ E ++ 
Sbjct: 248 AAANQGILNKLDDEVKQSQADLEEKRKQ 275


>gi|312601601|gb|ADQ90856.1| Putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma hyopneumoniae 168]
          Length = 919

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + ++++ +     +I L +  + ES E   IV   K    + D + E +  L   E +F
Sbjct: 138 EKQVKQLEKQAENAKIYLEKSKQLESVEVGLIVSDIKKYQTELDQVQEKLNDLKFQEPKF 197

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              +       +        I  E           R   R++     + +          
Sbjct: 198 ISEIEANEKIIITNTQKRSEIEAEIN------TKNREIHRLKEQINTLNLAYAKATQLQE 251

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR-SLRKLEEYQIKSELDNLLAEK 458
           I     I  N ++    +  ++SL   Q D    L  +  L+KLE  +  +       E 
Sbjct: 252 IILSSEISVNFEQKMAALRQKYSLISAQKDNFAKLISQNKLKKLEIEEKLNTFRTQKGEI 311

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE 484
           E+    LNS K        E+++  E
Sbjct: 312 ERNLYSLNSEKIISQTRISELKKSLE 337


>gi|33438277|dbj|BAC65656.2| mKIAA0803 protein [Mus musculus]
          Length = 1619

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +Q  DRR             I+++ A I        + + R   TE     +L+  ++  
Sbjct: 816 LQKADRR--------SLLAEIEDLRAQINGG----KMTLEREQGTEKSSQELLDCSMQQK 863

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           + LE   ++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 864 QSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 920

Query: 500 CEVSRADKATLQQAMI 515
            E  R++       + 
Sbjct: 921 LEAFRSEVKEKTDEIH 936


>gi|327263524|ref|XP_003216569.1| PREDICTED: kinesin-like protein KIF27-like [Anolis carolinensis]
          Length = 1397

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 94/261 (36%), Gaps = 22/261 (8%)

Query: 264  GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
              + + + E+ ++  ++++   +AE     +    +++RD + +      F K       
Sbjct: 770  KQYSLKIAELEHEADQAKI--DLAETQKQLQELENKELRDIAEKARLQKEFRKKMDAAKI 827

Query: 324  LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             +        D +         LS     +V  ++  +      + ++  R      +  
Sbjct: 828  KVQALQKKQQDTKKLAS-----LSTQNEKRVFEVEQNVSHMKNQQAQIQKRLQEESEKKK 882

Query: 384  DRRVEILKGLLIA--YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
                EI KG L         E  A I      +   + R + +E           + L K
Sbjct: 883  SLEAEIQKGQLQIKELQQKTEEQAKILKLKDQEIAAIKRKNSSETP---------QQLEK 933

Query: 442  LEEYQ--IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            LEE +  +  EL+ +L +++++  L    K++   I+   +E         ++ + R++ 
Sbjct: 934  LEEKKKWLDEELEKVLHQRQELVHLEEDLKRREAIISK--KETLMQEKSHLEIKKLRSSQ 991

Query: 500  CEVSRADKATLQQAMIEKEPI 520
                   K + + +++++E  
Sbjct: 992  ALSQDILKLSSRLSLLDQELC 1012


>gi|322830519|gb|EFZ33514.1| hypothetical protein TCSYLVIO_117 [Trypanosoma cruzi]
          Length = 895

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 60/203 (29%), Gaps = 19/203 (9%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           RE    R    ++  +RR EI + L      + E   ++  +   +    +    +E   
Sbjct: 399 REYHSARKPHLIRLRERRKEIEEQLRNYRARLLEENILLPEKGAARVRGGTPSGGSEEDA 458

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAE-----------KEKIDSLLNSGKQQWNQIAC 477
             I  + +      E        +  +                +   L+    +  ++  
Sbjct: 459 R-IAEIEVLRATVAELENQVKAHEETIMRTSYIAKEKDGVIRSLTRQLSEKDSELRRMEE 517

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-----VVISNRGWIRS 532
           E++      + S ++GRRR    E    +                    +    +  +  
Sbjct: 518 ELKRSMRRHASSQEVGRRRPMEKERELQEGRDETTESNAVFDSYKDVEQLQAQQKLEVED 577

Query: 533 LKSHSVDLSALH--FKEGDSLKI 553
           ++ H +D+      +KE D+   
Sbjct: 578 MRRHLLDMQKYKELWKEKDNELH 600


>gi|238883799|gb|EEQ47437.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 694

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 25/205 (12%)

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +   L+   L   +   +        N   L        + +  +       +  + 
Sbjct: 85  IDLEQLKLNATTLRNELEKQTYENFTIQSNYQNLERILNDLNLKIGELNSYK---QSSLD 141

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------PVMVSRFSLT 424
               +F +     ++   + L     +I + +  I  E + K           +++    
Sbjct: 142 ALIKNFELNNHQLKMNHQEKLNNLKEDITKQVDKILTEKQHKYEVEISNLNKEINKIKSD 201

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQ 474
               ++ LN   R L +L+E Q K EL          +N+  E   I+SLL S  +Q   
Sbjct: 202 RKNTESDLN---RRLIQLKEDQHKQELMMVGRVNDDINNMKKEIADINSLLESKTKQIEL 258

Query: 475 IAC-EIREVKEIFSKSTDLGRRRTT 498
           I   EI        K T L  + T+
Sbjct: 259 IKSVEIEGASNKVDKFTLLLDQLTS 283


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMNV-------LSMGRVPQ 353
           E   +  I   PK  ++D + +  ++     LS ++  +     +       + +  + +
Sbjct: 10  EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKK 69

Query: 354 VMPLDGILKEWLAHRREV--------LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +M   GI K + + R+++              F  Q            +     +++   
Sbjct: 70  IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSL-----RKLEEYQIKSELDNLLAEK 458
           I  ++ K K     R  L+E+Q+D  +N  + L  L      KLEE          +   
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESI 189

Query: 459 EKIDSLLNSGKQQWNQIA 476
             I+  L+S K  W +I 
Sbjct: 190 VDINKYLHSPKDAWKRIK 207


>gi|227890257|ref|ZP_04008062.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC
           33200]
 gi|227849071|gb|EEJ59157.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC
           33200]
          Length = 1186

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 21/208 (10%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
            EL+   R   L    DE    V +            LL      L D+ T F  +    
Sbjct: 80  VELVFDNRDHQLASDNDE----VVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMSS 135

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA- 405
               +     +D IL      RR +         +     +   +   IA   +D+  A 
Sbjct: 136 DSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKEIALKQLDKTNAN 187

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLAE 457
           +IR  D  K +      L E    A         L+ +L+ L  LE   +  E   +  +
Sbjct: 188 LIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKK 247

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI 485
                 +LN    +  Q   ++ E ++ 
Sbjct: 248 AAANQGILNKLDDEVKQSQADLEEKRKQ 275


>gi|307136479|gb|ADN34280.1| nuclear matrix constituent-like protein 1 [Cucumis melo subsp.
           melo]
          Length = 1205

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 99/270 (36%), Gaps = 26/270 (9%)

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E + +G   +   E         + +K       K +  L+   D S       L  K +
Sbjct: 276 ERLAKGQTILNQREERANENDRMVKQK------EKDLEELQKKIDSSN------LALKRK 323

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
             D    + +I +    + +    + +       + + +  +L E   H   +  ++  F
Sbjct: 324 EEDIGSRLANIALKEQAKIKEKELLVLEEKLTAREKVEIQQLLDE---HNAILDAKKIEF 380

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----KPVMVSRFSLTENQVDAI-- 431
            ++   +R  + + L      +++  A I++ ++      + +        E + D    
Sbjct: 381 ELEIDQKRKSLDEELKNKVSEVEKKEAEIKHMEEKLGKREQALEKRTEKFKEKEADYDAK 440

Query: 432 ---LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
              L  R +SL KLEE  +++E   LLA+ E++  L    ++   +   ++ ++ E    
Sbjct: 441 FKALKQREKSL-KLEEKNLEAEKKQLLADTEELICLKAEVEKIRAENEAQLLKLHEERES 499

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                  R+ F  +    K  +++   +KE
Sbjct: 500 LKVSETERSDFLRLQSELKQEIEKYRQQKE 529


>gi|186683812|ref|YP_001867008.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466264|gb|ACC82065.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 497

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 103/316 (32%), Gaps = 9/316 (2%)

Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243
            +G+ + +     +E  +      +  E + E ++  I   +    G ++  ++  +E Y
Sbjct: 22  GIGVVSYLSLLQYKENAQWVTHTREVLEKTKE-IMSQIKDAETGQRGYLLTGKKRYLEPY 80

Query: 244 RLGRGGFRVRARW-CVEEVGRGSWCIVVTEI-PYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           R+  G    + +          +    +  + P   +K  LIE+            L+ +
Sbjct: 81  RIATGEIVQQLKALRQLTADNPNQQRRLDRLEPLITKKLVLIEQAINARSKDLESALQIV 140

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           + +  + +   +     +++ +     +     ME     +   +       +  +   L
Sbjct: 141 QTDRGQQIMEDIRMLTTAMENEE--NELLKQRSMEANASAHQTTVLTIFGSIIASVIVGL 198

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA-YLNIDEIIAIIRNEDKPKPVMVSR 420
              + ++  V  +R    +Q     +EI      A   N +E +    NE K     + R
Sbjct: 199 AATITNQELVKRKRMENSLQKARAELEIEVNKRTAELRNTNEELQTEINERKKAESEILR 258

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++   Q++  +  R   L    +             +  + S+    +      A ++ 
Sbjct: 259 LNV---QLEQRVAERTAQLEATNKEMEAFSYSVSHDLRAPLRSIDGFSQALLEDYADKLD 315

Query: 481 EVKEIFSKSTDLGRRR 496
            + + + +      +R
Sbjct: 316 TLGQNYLQRVRAATQR 331


>gi|145475347|ref|XP_001423696.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390757|emb|CAK56298.1| unnamed protein product [Paramecium tetraurelia]
          Length = 529

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 79/227 (34%), Gaps = 16/227 (7%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            +RI  L  + D ++  +R V+ PKN S+D + L E + +      +  L    L    V
Sbjct: 19  NRRIKTLYSMNDSNSCRIRKVIIPKNISIDKETLYEQLHLEKLKTKQLQLENQSLQN--V 76

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            Q    +  + +    R+ +        ++   +  EI            + +     + 
Sbjct: 77  LQQFGKEIDMMDESDQRKVIQ----QSLLRIKQKDQEIQILKENTQFKAQQDMKKQIQDL 132

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           K + +        E   + I+   +  L K+E  +             +++ +  S   Q
Sbjct: 133 KKELLKYQILQKFEGDQNQIVQDNINLLNKIETQK---------QYINELEKI-RSDYIQ 182

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                 ++++V ++  +     R R    E++     +  + ++  E
Sbjct: 183 LKAKNNQLQQVMKLKDQQIQRYRDRDPLSEMNLMKHPSKNENLLVDE 229


>gi|254255005|ref|ZP_04948322.1| Flavodoxin reductase [Burkholderia dolosa AUO158]
 gi|124899650|gb|EAY71493.1| Flavodoxin reductase [Burkholderia dolosa AUO158]
          Length = 735

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSI 675
            GN F      +  + R G  F+   S + + +         G  VA     ++++ F +
Sbjct: 276 SGNRFFNTLGNLQRDPRAGLLFIDFDSGDLLYVAAHAEIVWDGPLVAAFDGAQRVVRFHV 335

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 336 REVR---RTRGV 344


>gi|242820397|ref|XP_002487502.1| bZIP transcription factor, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218713967|gb|EED13391.1| bZIP transcription factor, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 644

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           +R +         ++  + R EI         NID++IA   NE++ K +   +  L   
Sbjct: 217 YRTDSNLHLRRDGIRKKNARFEIP--AERTLSNIDQLIAQSTNEEEIKELKQQKRLLRNR 274

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           Q      L  R  +KL   +++ E          ++  L++ K + +++  E  E
Sbjct: 275 QA----ALDSRQRKKLHTEKLEEEKKQFTTVITDLEEALHNMKIRESELLREKTE 325


>gi|307203580|gb|EFN82613.1| hypothetical protein EAI_00905 [Harpegnathos saltator]
          Length = 396

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 93/273 (34%), Gaps = 12/273 (4%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I K  +LI   ++  ++    +  E   ++L  +N   + + L + I    ++       
Sbjct: 39  ISKTEDLIK--KLEYIKQKETKYKE---LILQLENGEREIENLSDQITNKEEIIKDQSHE 93

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRRE---VLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           +  L    + +   ++  L +  A   E   +L  R       +  + + +  L   Y  
Sbjct: 94  LEALRNKFLIKNQQVEEDLSDLNASEHEMLGILCDRIYSLKTLLQEKSDYMVKLEADYKL 153

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR----LRSLRKLEEYQIKSELDNLL 455
           ++     ++                + Q   +L       L+   ++ E    S++ ++ 
Sbjct: 154 LELKRMYLKVRQTEDNYQRVTEDFNKVQDKLLLATTGDADLQKSLRIMEENYCSKIASIE 213

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E   +  L N+  ++  +I  E+      F +  D  +  T   +V   +    ++ + 
Sbjct: 214 NETINLRDLTNNLNEELEKIKKELTSKNITFLQMQDKYKDSTNQLDVICQELVKEKEKLA 273

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             E     ++ +      +++ +    +  KE 
Sbjct: 274 RAENTNCGLNQQLQAYINENYHLGQQNVSLKEN 306


>gi|221056909|ref|XP_002259592.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809664|emb|CAQ40365.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1482

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 54/157 (34%), Gaps = 12/157 (7%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN- 433
           +  + +    R  +I K + ++    DE     +   + +  +       E+    I++ 
Sbjct: 661 KQKYDLLKKKREQDITKEVNMSKSIADEEDNFFKKFYQSQSFIKLEEKKLEDSSKKIVDE 720

Query: 434 ---------LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
                    +   S R++E      E+     E EK    +   K++      E+ +  +
Sbjct: 721 NVRLTRMKEMNENSKRQIENDVHDMEIK--RKEIEKDKDDMEIKKKEIELAKEEMNKQNK 778

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
              +  D+  RR    E  ++     ++ + E+  + 
Sbjct: 779 QLEEEQDILNRRRKELEEEKSMLDNTKREVDEQNDLI 815


>gi|320170777|gb|EFW47676.1| WD repeat-containing protein SAZD [Capsaspora owczarzaki ATCC
           30864]
          Length = 1038

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 22/168 (13%)

Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624
           +  T G    +   +L      G+ +         ++IV AF   +T  + VV+   N F
Sbjct: 308 VFVTAGADGVVRMWDL----STGKPVHSRKLDGPKREIVDAFASPATSSIFVVTDDQNIF 363

Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMS 682
            ++++ +    +       V   +++  +  +  D  HV +   + +L  F +       
Sbjct: 364 QLDDTTLEVKKQ------IVGQNDEIIDLRFIGDDDSHVVMATNSEQLRTFDLATF---- 413

Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730
              G RL     G    V+C  +      + SAG+            L
Sbjct: 414 ---GARLLY---GHTDIVLCLDVSNDGLLLVSAGKDNTVRAWQSEDRL 455


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R P +   GNFG+   D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDPA 36


>gi|221055267|ref|XP_002258772.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193808842|emb|CAQ39544.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 774

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 15/175 (8%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           ++   +  +   + L  A  N DE    IR+ +K +   +       N+        +  
Sbjct: 324 KLNKANETL--SRKLETAVENNDEQAQEIRDLNK-RISKIGEEKTEMNKRIEGYEFTIHK 380

Query: 439 LRKL--EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE---IREVKEIFSKSTDLG 493
            +KL  EE   K E   L  E + +   LN      ++I  E   ++E  +         
Sbjct: 381 SKKLKNEEQNDKEENGALDMEIKNLKRELNLANSLNDKIKDEKLYLQERIKNKEDKLRRE 440

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           + +    + +  + A  +   +  E ITV      +I  L S ++  S+   K+G
Sbjct: 441 KDKVASEKCACMNAAVSKMVYVPNERITVE-----YI--LLSENIQRSSTKTKKG 488


>gi|189458891|ref|NP_001074832.2| centromere protein F [Mus musculus]
          Length = 2997

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 284  EKIAELIIAKRIPLLEDIRDESAEDVRIVLF----PKNRSLDPDLLMESIFMLSDMETRF 339
            E+I +  +A+    +  +++++A    IV       +++  +  LL E +        + 
Sbjct: 877  EQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKL 936

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRRV-EILKGLLIAY 397
              N  +L        +  D +  E       + L +++   +   +  + E+ + L    
Sbjct: 937  NKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 996

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELD 452
            +N+ +    I +    +   ++  S    Q       RL+ L++ EE       ++    
Sbjct: 997  MNLLQKHEKITSCIAEQERSIAELSDQYKQE------RLQLLQRCEETEAVLEDLRGNYK 1050

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                   K++ +L+           E+ ++KE F+K       +  F E          +
Sbjct: 1051 TAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELE 1110

Query: 513  AMIEKEPITVVISNR 527
               +     +  +N+
Sbjct: 1111 IEQQTVRSEITNTNK 1125


>gi|109138675|gb|ABG25915.1| LEK1 [Mus musculus]
          Length = 2997

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 284  EKIAELIIAKRIPLLEDIRDESAEDVRIVLF----PKNRSLDPDLLMESIFMLSDMETRF 339
            E+I +  +A+    +  +++++A    IV       +++  +  LL E +        + 
Sbjct: 877  EQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKL 936

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRRV-EILKGLLIAY 397
              N  +L        +  D +  E       + L +++   +   +  + E+ + L    
Sbjct: 937  NKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 996

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELD 452
            +N+ +    I +    +   ++  S    Q       RL+ L++ EE       ++    
Sbjct: 997  MNLLQKHEKITSCIAEQERSIAELSDQYKQE------RLQLLQRCEETEAVLEDLRGNYK 1050

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                   K++ +L+           E+ ++KE F+K       +  F E          +
Sbjct: 1051 TAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELE 1110

Query: 513  AMIEKEPITVVISNR 527
               +     +  +N+
Sbjct: 1111 IEQQTVRSEITNTNK 1125


>gi|297829356|ref|XP_002882560.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328400|gb|EFH58819.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 93

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196
              +F    P +L NG+ GI  G    IP++N 
Sbjct: 1   MGSMFMPIIPTILVNGSQGIGAGWNNFIPNYNP 33


>gi|221110047|ref|XP_002170903.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 1167

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 84/267 (31%), Gaps = 7/267 (2%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLI-EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           E+          E+  +  + +L+ E+ A     K++ +  + ++E+ + + I    K +
Sbjct: 513 EIEDNKKQKEADELKIKKMQEQLLQEEAARREKEKQLEVQLNQQEENKKLLEIEDNEKQQ 572

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD----GILKEWLAHRREVLFR 374
             D   + E    L   E         L +    Q            K+        +  
Sbjct: 573 EADELKIKEMQEQLLQEEAARREKEEQLEIQLYQQEENKMLLEIEDNKKQKEADELKIKE 632

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                +Q    R E  K L I     DE   ++  E+  K        + E Q  ++   
Sbjct: 633 MQEQLLQEEAARREKEKHLEIQLNQQDENKKLLEIEENEKQQEADELKIKEMQEQSLQEK 692

Query: 435 RLRSLRK--LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
             R  +K  LE    + E + +L E E       + + +  ++  ++ + +    +    
Sbjct: 693 AARREKKEQLEIQLYQQEENKMLLEIEDNKKQKEADELKIKKMQEQLLQEEAARREKEKQ 752

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEP 519
              +    E ++           ++  
Sbjct: 753 LEIQLNQQEENKKLLEIEDNEKQQEAD 779



 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 87/269 (32%), Gaps = 12/269 (4%)

Query: 345  VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
            +L+     + +      ++        +       +Q    R E  K L I     +E  
Sbjct: 892  LLNQEAKNKKLLEVEENEKQQEADELKIKEMQEQLLQEEAARREKEKQLEIQLNQQEENK 951

Query: 405  AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR--KLEEYQIKSELDNLLAEKEKID 462
             ++  ED  K        + E Q   +     R  +  +LE    + E +  L E E   
Sbjct: 952  KLLEIEDNKKQKEADELKIKEMQEQLLQEEAARREKEKQLEIQLNQQEENKKLLEIE--- 1008

Query: 463  SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                  K+Q      +I+E++E   +     R +    E+    +  +++ +  +E    
Sbjct: 1009 ----DNKKQKEADELKIKEMQEQLLQEEAARRDKEKHLEIHLNQQEEIKKLLEIEENEKQ 1064

Query: 523  VISNRGWIRSLKSHSVDLSALHF-KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581
              +++  I  ++   +        KE  S    + A    ++L               + 
Sbjct: 1065 QEADKLKINEMQEQLLQEETARRGKENQSELHIIQAEYNTKLLKFEEMENMKRTEVKEIT 1124

Query: 582  SGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610
                  +    +I   +++ I+ + + ++
Sbjct: 1125 EKERQSKGGNEVI--QNDEKIIQSLLLNN 1151



 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 13/280 (4%)

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           L E+ A     K++ +  + ++E+ + + I    K R +D   + E        E     
Sbjct: 179 LQEEAARREKEKQLEIQLNQQEENKKLLEIEENEKQREVDELKIKEMQEQSLQEEAARRE 238

Query: 342 NMNVLSMGRVPQVMPLD----GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
               L +    Q            K+        +       +Q    R E  K L I  
Sbjct: 239 KEEQLEIQLYQQEENKMLLEIEDNKKQKEADELKIKEMQEQLLQEEAARREKEKHLEIQL 298

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI--LNLRLRSLRKLEEYQIKSELDNLL 455
              DE   ++  ++  K   V    + E Q   +     R     +LE    + E + +L
Sbjct: 299 NQQDENKKLLEIDENEKQQEVDELKIKEMQEQLLQEEAARREKEEQLEIQLYQQEENKML 358

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E E         K+Q      +I+E++E   +     R +    E+    +   ++ + 
Sbjct: 359 LEIE-------DNKKQKEADELKIKEMQEQLLQEEAAKREKEKQLEIQLNQQEENKKLLE 411

Query: 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
            +E      ++   I+ ++   +   A   ++   L+I L
Sbjct: 412 IEENEKQQKADELKIKEMQEQLLQEEAARREKEKQLEIQL 451



 Score = 37.4 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 17/236 (7%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             +    +E+  +      +     Q  +  L E+ A     K + +  + +DE+ + + 
Sbjct: 609 ENKMLLEIEDNKKQKEADELKIKEMQ--EQLLQEEAARREKEKHLEIQLNQQDENKKLLE 666

Query: 311 IVLFPKNRSLDPDLLMES----IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
           I    K +  D   + E     +   +    +       L      +++      K+   
Sbjct: 667 IEENEKQQEADELKIKEMQEQSLQEKAARREKKEQLEIQLYQQEENKMLLEIEDNKKQKE 726

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
                + +     +Q    R E  K L I     +E   ++  ED  K        + E 
Sbjct: 727 ADELKIKKMQEQLLQEEAARREKEKQLEIQLNQQEENKKLLEIEDNEKQQEADELKIKEM 786

Query: 427 QVDAILNLRLRSLR--KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           Q  ++     +  +  +LE    + E         KI  LL   + +  Q A E++
Sbjct: 787 QEQSLQEEAAKREKEKQLEIQLNQEE---------KIKKLLEIEENEKQQEADELK 833


>gi|319405909|emb|CBI79541.1| Valyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 907

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 31/190 (16%)

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM--- 380
            + E ++ L+ M+     NM  L      +    +               R     M   
Sbjct: 718 HVTEELWSLTAMQDLKRENMLALMQWPQVKFKDEEAANDISWIIDVVSGIRSVRAEMNVP 777

Query: 381 -------------QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
                        Q I  RV   + +L     I E    I   D+  P + ++  L E  
Sbjct: 778 VSALAPLVILEGGQVIQERVHRYEAILKRLARIGE----INFSDQS-PAISAQIILGE-- 830

Query: 428 VDAILNLRLRSLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGK----QQWNQIACEIRE 481
             AI  L L  L  L  E  ++K ++D +  + EKI   LN+ K     +   I  E + 
Sbjct: 831 --AIFCLPLGQLINLDAERARLKKDMDKIERDIEKILIKLNNPKFIANAKQEIIELERKR 888

Query: 482 VKEIFSKSTD 491
           + E++     
Sbjct: 889 ITELYDAKKK 898


>gi|323447462|gb|EGB03381.1| hypothetical protein AURANDRAFT_205 [Aureococcus anophagefferens]
          Length = 1037

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 108/331 (32%), Gaps = 30/331 (9%)

Query: 255 RWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKI----------AELIIAKRIPLLEDIRD 303
           R  +EE+     + + + ++ Y  +   + EK            EL+  ++   +E   +
Sbjct: 609 RNKIEELQLHNEYQLRLKDMSYSEKIKEVTEKYMQDLEQEKNKYELLREEKND-IEMECE 667

Query: 304 ESAEDV----RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           E    +       L     +    +++E +     +     L        +       +G
Sbjct: 668 ERHRQMEDKHHHELQELENTYQQKIMLE-VERYQQLAHERSLQQQRWDEQQQLLKQTHEG 726

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            + E      + L      R+Q  D + E+ +    +   +++ I      D     +  
Sbjct: 727 YVSELTDDFEQKLEEDRQIRLQLEDEKSELHREFEESKAQLEDDI------DTEIQNLRH 780

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           R+  T+   +    LR +    + + +      ++  +KE+I SLL   K+   QI    
Sbjct: 781 RYD-TQLAAEREATLRYKGENGIMKKKFTVLTKDIEDQKEEIKSLLGKEKELQEQIKK-- 837

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSH 536
              +EI +  T++ RR  T     +      ++    ++   V+      ++     +  
Sbjct: 838 -LEREISAHKTEIKRRDDTIGAKEKKIYELKKKNQELEKFKFVLDYKIKELKRQIEPRET 896

Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
            +       K  D      H       L++ 
Sbjct: 897 EIGNMKAQIKAMDHELEQYHKSNAQLDLMIG 927


>gi|310800602|gb|EFQ35495.1| TPR/MLP1/MLP2-like protein [Glomerella graminicola M1.001]
          Length = 2126

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 80/247 (32%), Gaps = 23/247 (9%)

Query: 276  QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI--------VLFPKNRSLDPD--LL 325
            + + + L  + A L        +   + ES+ + R          +  +   ++    LL
Sbjct: 1129 RTEYNELKSQSATLRAEAESAKVALSQSESSWEERRQRLEQEMSEIKTRRDDVNAQNKLL 1188

Query: 326  MESIFMLSDMETRFPLNMNV----LSMGRVPQVMPLDGILKEWLAH-RREVLFRRSSFRM 380
             E +  ++   +      N                    L+E   + RRE       + +
Sbjct: 1189 HEQLESITKQFSALKEGRNASAEDAGNNAETGNDSAADGLRELNNYLRREKEILEVQYDL 1248

Query: 381  QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
              +     + + L  +   +DE    +  E + +          ++ +D +  L L    
Sbjct: 1249 -KVQESKRLQQQLEYSQSQLDEARLKLDQERRAQAESGQASIAHKDLMDKLNELNLYRES 1307

Query: 441  ----KLEEYQIKSELDNLLAEKEKID---SLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
                + E  Q ++++    A+ E+++     L +  ++       + E  +   +  D  
Sbjct: 1308 SATLRNELAQARTQISEKNAKIEELEGKVQPLEARIEELQTQKGFLEEEIKQVQEDRDRW 1367

Query: 494  RRRTTFC 500
            ++RT   
Sbjct: 1368 QKRTEGI 1374


>gi|322371362|ref|ZP_08045913.1| FG-GAP repeat-containing protein [Haladaptatus paucihalophilus
           DX253]
 gi|320549060|gb|EFW90723.1| FG-GAP repeat-containing protein [Haladaptatus paucihalophilus
           DX253]
          Length = 417

 Score = 41.7 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591
           +   H          +GD  +  L A T D++L  ++ GK     AGNL S  G+ + I 
Sbjct: 97  NCNIHGYGDPIFADYDGDGTQDVLVATTEDKVLGFTSAGKQEF--AGNL-SWWGYTKPIV 153

Query: 592 LLIDLNHNQDIV------TAFVYDSTCKLL 615
                +  ++IV      T FVY +   L+
Sbjct: 154 TDFTTDPGKEIVVTDLNGTVFVYSADGSLV 183


>gi|6319178|gb|AAF07196.1|AF194970_1 LEK1 [Mus musculus]
          Length = 2473

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLF----PKNRSLDPDLLMESIFMLSDMETRF 339
           E+I +  +A+    +  +++++A    IV       +++  +  LL E +        + 
Sbjct: 353 EQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKL 412

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRRV-EILKGLLIAY 397
             N  +L        +  D +  E       + L +++   +   +  + E+ + L    
Sbjct: 413 NKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 472

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELD 452
           +N+ +    I +    +   ++  S    Q       RL+ L++ EE       ++    
Sbjct: 473 MNLLQKHEKITSCIAEQERSIAELSDQYKQE------RLQLLQRCEETEAVLEDLRGNYK 526

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                  K++ +L+           E+ ++KE F+K       +  F E          +
Sbjct: 527 TAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELE 586

Query: 513 AMIEKEPITVVISNR 527
              +     +  +N+
Sbjct: 587 IEQQTVRSEITNTNK 601


>gi|291222881|ref|XP_002731446.1| PREDICTED: golgi autoantigen, golgin subfamily a, 5-like
           [Saccoglossus kowalevskii]
          Length = 746

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 103/286 (36%), Gaps = 19/286 (6%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA--ELIIAKRIPLLEDIRDESAED 308
           R R    VE +      + V  +  +     + EKI   +++  ++  +L+D  D S   
Sbjct: 291 RSREEDYVEAIAAKDSQLAVLRVRLEDLDKEVREKIKTIDILQNEKDRILKDHTDSSGLQ 350

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
            + +   + +  + +  ++             +            +     +L++   H 
Sbjct: 351 GQALDSVREKLQESEAALKREIQTFKQSQVDAMQRQSRVEEEHRTLSSAYSLLQQQHNHT 410

Query: 369 RE----VLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED-----------K 412
                 +  + +   +  + + + +  +       + D++I  ++  D           +
Sbjct: 411 HTNNLSMQLKTAKNNLDHVKQELNDYKQKATRILQSKDKLINSLKESDPSIDQGTVTGIE 470

Query: 413 PKPVMVSRFSLTEN-QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
            + +   R ++ E  QV  +   +LRS  +  E+Q +++ D    + + ++  L+  ++Q
Sbjct: 471 LEELKQDRDAMKEELQVSKVKLEQLRSELQDLEFQSQTDSDMAQEQIQDLEQQLSDHRRQ 530

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++  E+ E ++          ++ T  +V   D+      +  +
Sbjct: 531 VKELEAELTEKRDEMKYMQQELLKQKTNFQVRLQDREDEIHKLRNQ 576


>gi|254457276|ref|ZP_05070704.1| translation initiation factor IF-2, N-terminal domain protein
           [Campylobacterales bacterium GD 1]
 gi|207086068|gb|EDZ63352.1| translation initiation factor IF-2, N-terminal domain protein
           [Campylobacterales bacterium GD 1]
          Length = 886

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 41/278 (14%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           +  ++I  L  ++DE         F K+   D + +   +  L   E +       L+  
Sbjct: 190 LEEQKIKTLTQLKDE---------FLKSIKTDYEKIHTKLDDLIQKELK-------LTQW 233

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI-DRRVEILKGLLIAYLNIDEIIAIIR 408
           +           +       +     + ++ +   ++ +   +        ++EI  II 
Sbjct: 234 QQELNQSEKMFSQAKEIFESQKEKVLNEYKEEIANEKEIFTHRQEAQKVSKLEEINKIIE 293

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE-------LDNLLAEKEKI 461
              K K + +++   +  Q ++ L ++   +   E+Y    E        + +  E +  
Sbjct: 294 ELYKTKEIDINKKEESIIQKESKLKIQENEILAKEKYLESQEDLLYKQAKEKVSEEIKTY 353

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
              L   + +  ++  E+ ++K+   +      R        +  +  + +  IE+    
Sbjct: 354 QDKLKYHELEIQKLKEELFDLKDELDEHEKFKDRDLPQELKEKNSELRILKEKIEE---- 409

Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559
                   IR  K           KE D L   +    
Sbjct: 410 --------IRKQKREI-----ESKKEIDFLSFEVEMKN 434


>gi|148681082|gb|EDL13029.1| mCG115527 [Mus musculus]
          Length = 2939

 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 284  EKIAELIIAKRIPLLEDIRDESAEDVRIVLF----PKNRSLDPDLLMESIFMLSDMETRF 339
            E+I +  +A+    +  +++++A    IV       +++  +  LL E +        + 
Sbjct: 819  EQIHQNFVAETNQCISKLQEDAAVHQNIVAETLATLESKEKELQLLKEKLEAQQTEVQKL 878

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRRV-EILKGLLIAY 397
              N  +L        +  D +  E       + L +++   +   +  + E+ + L    
Sbjct: 879  NKNNCLLEGTLKELQLLSDTLSSEKKEMNSIISLSKKNIEELTQANEALKEVNEALEQEK 938

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-----YQIKSELD 452
            +N+ +    I +    +   ++  S    Q       RL+ L++ EE       ++    
Sbjct: 939  MNLLQKHEKITSCIAEQERSIAELSDQYKQE------RLQLLQRCEETEAVLEDLRGNYK 992

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                   K++ +L+           E+ ++KE F+K       +  F E          +
Sbjct: 993  TAQENNAKLECMLSECTALCENRKNELEQLKETFAKEQQEFLTKLAFAEEQNRKLMLELE 1052

Query: 513  AMIEKEPITVVISNR 527
               +     +  +N+
Sbjct: 1053 IEQQTVRSEITNTNK 1067


>gi|325185448|emb|CCA19932.1| guanylatebinding protein putative [Albugo laibachii Nc14]
          Length = 853

 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 98/292 (33%), Gaps = 32/292 (10%)

Query: 241 ESYRLGRGGFRVRARW--CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--------I 290
           E Y+       +R  +   +++  +    I++T + ++  +   IEK+  L        +
Sbjct: 400 EIYKTHSVEGSMRRSYFQKLKQHIQKQKNILMTTLQHRSNQF-CIEKLTNLKSTVLESFV 458

Query: 291 IAKR----IPLLEDIRDESAEDVRIVLFPKNRSL-DPDL---LMESIFMLSDMETRFPLN 342
              +    +  ++  + ES + +   L  +     + +      + +F     +      
Sbjct: 459 EDAKFKAMLSEIDSHQGESHQYLLAELLDRVEDAYNAEAKGPAKKHVFYQFMRQDFISFC 518

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
             +L +     +     ++ E  A+R  +     +   +  +   ++ +       +ID 
Sbjct: 519 QKLLCL----CLKHAQDLISEERANRMIL---METHEKKECELNYQLHEKEQEIRHHIDT 571

Query: 403 IIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
              I  N     + +      L  ++  A  +   R   K E  Q + +L  +  + EK+
Sbjct: 572 EGQIKENVTLHIEKIKALEVKLQNHKEKASQDEDNRRQLKTEVEQAQRKLMEMEKDIEKL 631

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
              L +      +   EI+ +KE  +       R +   E     +   +Q 
Sbjct: 632 QLQLTNKSDTLTEYRTEIKALKESTAD-----MRTSHEQEKETWIRKVAEQD 678


>gi|322819427|gb|EFZ26553.1| putative SMC-domain containing protein [Trypanosoma cruzi]
          Length = 478

 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKE+  H++ +   R   R + +  + E  + +     +I+            +      
Sbjct: 207 LKEFTEHQKLLQAERERHRERFLVLQEETTRTVNSLMTDIE------------RQQRQHL 254

Query: 421 FSLTENQVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             + E Q    + ++ L    + E     +E      E ++I + L   +    ++  E+
Sbjct: 255 REIREVQRQHTVQVKDLERQLQEEREAHATESQKHTEELDQIQATLKKLEVDKTRLMQEL 314

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            E      +       R +  ++ R +       +  +E  T 
Sbjct: 315 GEQHSQVEEWRRRYNERDSLAKLERIEHQARFDELHVEEAQTF 357


>gi|320584104|gb|EFW98316.1| hypothetical protein HPODL_0208 [Pichia angusta DL-1]
          Length = 479

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 73/215 (33%), Gaps = 26/215 (12%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL----------LMESIFMLSDMETRFP 340
                  L      S  D   ++    R L+             L + +   +    ++ 
Sbjct: 56  QDDDKQTLRTENSVSTSDQTEIIEELKRQLEAKDKEILRLESNSLKDQLEQKTQECEKYQ 115

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            N   L    + ++  +  + ++      E+    +   ++     +EIL+G +     +
Sbjct: 116 SNYQAL----LSRLSSMKSVFQKMKE--SEIELENTQNELKTCKETIEILEGQVEEKQKV 169

Query: 401 DEIIAIIRNE--DKPKPVMVSRFSLTENQVDAILNLRLRS-LRKLEEYQIKS-------E 450
            + + +      D+   +      L+++      + +L+   + LE  ++++       E
Sbjct: 170 IDALNLSVASLKDEAANLNAECDKLSKDYSMLKKSAQLKEDEQTLEIKRLETSNKKYTVE 229

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           L  L +E E+   ++N  K     +  E+ E K  
Sbjct: 230 LKELRSEIEEYLIIVNEEKISKQNLLHEMNETKAK 264


>gi|145539446|ref|XP_001455413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423221|emb|CAK88016.1| unnamed protein product [Paramecium tetraurelia]
          Length = 555

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 101/271 (37%), Gaps = 17/271 (6%)

Query: 260 EVGRGSWCIVVTEIPYQV--QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           E+ R    I+  E   +V     +  E++ +L  ++           S E +  +   + 
Sbjct: 239 ELRRSRERIIQIEREREVLEDLKKSRERVEDLRRSRERLEYMQDLKRSRERIEQLDDLRR 298

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                D L  S   L D++        +  + R  Q M     LK+    + ++      
Sbjct: 299 SRERLDDLRRSRERLEDLKKSRERLSQLEELKRSRQRMEELEELKKSRERQAQID----- 353

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++    R+E L+        +++      N++K + +  SR  + E Q        LR
Sbjct: 354 -ELKKSRERLEDLRKSRERLEQLEQERK---NQEKIEELRKSRSRIEELQKQRRKVEELR 409

Query: 438 -SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            S  +LE+ + + E   L   +E+++ L  S ++       +I  +++   +   L   R
Sbjct: 410 TSQERLEQLKKQKEEIELRRSQERLEDLRKSRERL-----EQIEALRQSREQQRALEELR 464

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            +   V +  K+ L+   +E E   +  S +
Sbjct: 465 QSRERVEQLRKSQLRIEQLENERKVLERSRQ 495


>gi|148682679|gb|EDL14626.1| A kinase (PRKA) anchor protein (yotiao) 9, isoform CRA_b [Mus
            musculus]
          Length = 3811

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I        + + R   TE     +L+  ++  
Sbjct: 2989 LQKADRR--------SLLAEIEDLRAQINGG----KMTLEREQGTEKSSQELLDCSMQQK 3036

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + LE   ++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 3037 QSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3093

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3094 LEAFRSEVKEKTDEIH 3109


>gi|327537972|gb|EGF24668.1| secreted protein containing DUF1549 [Rhodopirellula baltica WH47]
          Length = 882

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
             +P    R  +   Q             +      ++ELD L +E  K+D  +    ++
Sbjct: 395 DAEPETNPRQVVDGYQ---------EPYARFPTEAQQAELDRLDSELAKLDQQIAPLNKR 445

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT---VVISNRG 528
            NQI   I+++KEI   + D     T+  E      AT  +AM  +E      +  S   
Sbjct: 446 VNQITKRIQQIKEIEPANEDAAEPETSQAENPE-GTATEAEAMTPEEEALHNELGQSTSS 504

Query: 529 WIRSLKSHS-----------VDLSALHFKEGDSLKIALH 556
             +  K H+               A+  KE D ++    
Sbjct: 505 LAKLQKQHAKLQRNRTAVERAVDKAMVMKERDEVRKTFV 543


>gi|212697395|ref|ZP_03305523.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675587|gb|EEB35194.1| hypothetical protein ANHYDRO_01965 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 633

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 7/157 (4%)

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR----SLRKLEEYQIKSEL-DNL 454
           ID+++    NE          + LT  Q +A L L  +     L   E YQ   E   N+
Sbjct: 422 IDDLVTKGTNEPYRMMTSRCEYRLTMRQDNADLRLTEKAHEIGLVTDERYQKMIEKRKNI 481

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             E +++  ++    Q+ N+I  EI     K  +S    + R   T+ ++   D+     
Sbjct: 482 EGEIKRLQKIMVGPSQENNKIMEEIGSSPLKTGYSLFDLIKRPELTYEKLEILDRDRPTL 541

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549
              ++  +   I  +G+I+   +       L  K+ D
Sbjct: 542 PKFQQIQVQTEIKYQGYIKKQMADIGKFKKLENKKLD 578


>gi|15645092|ref|NP_207262.1| type I restriction enzyme R protein (hsdR) [Helicobacter pylori
           26695]
 gi|2313568|gb|AAD07526.1| type I restriction enzyme R protein (hsdR) [Helicobacter pylori
           26695]
          Length = 1055

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 34/283 (12%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLL 298
            SY+    G+ +      E   + +   +     +    +     I ++   ++     +
Sbjct: 696 RSYKNMSFGYLIDFVGIQENFDKTTDDYLKELNRFNQSGANSDSHIKDMFADRKTLEEDI 755

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           ++  D+  +     +     ++     M  +  +S          N++      +++ L 
Sbjct: 756 KNAYDDLFDYPIDDIEGMTSAIVSMSAMNELVKVSRAINTLKERYNLIRTSNDKKILSLK 815

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
             +     H               I   +      L A  NI+E                
Sbjct: 816 EKIDIEKIH--------------KISSMLHQKAKHLHALKNINEP-----------KNPN 850

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               L    + A+L+ ++    K  +     E + +  ++++   +L     Q +    E
Sbjct: 851 DLMIL--EDLIALLDFKIE--FKERKELRFKEQEEITTKQKQAKEILEKIPDQQD---KE 903

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           I++  + FSK          F E+S +  A + Q    KE  T
Sbjct: 904 IQKFYKDFSKLLQTPTTSQNFEEISHSYDAIISQLKQHKEQTT 946


>gi|281341180|gb|EFB16764.1| hypothetical protein PANDA_007688 [Ailuropoda melanoleuca]
          Length = 3221

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +      +TE+   +      E    L+ +++   LE  R++ A + R     +      
Sbjct: 252 QKEKETALTELRAMLNGRHAQE--LALLRSRQQQELELAREQHARE-REETVLRCSQETA 308

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-HRREVLFRRSSFRMQ 381
           +L      + S+ME    +  N+       + + L+ + +E  A HR E+   +  F+ +
Sbjct: 309 EL---KEKLQSEMEKNARMIENLKQDWESERGLCLENLRRELFAKHRLELENLQDQFKKE 365

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN-QVDAILNLRLRSLR 440
             +++ E+ + +  A    +  +  +  + +     +    L++  Q +  L LRLR   
Sbjct: 366 LAEQKAEL-EKIFQAKNQAECALRTLETQQEAALRQLREDLLSQRCQYERDLELRLR--- 421

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
                      D     + +++ L  S  +   Q   EIR    ++S+       R    
Sbjct: 422 -----------DQEAEHQLELEGLRASYAELKAQSQEEIR---RLWSQLESPRPDRQDPS 467

Query: 501 EVSRADKATLQQAMIEK 517
           E+    +   QQ   EK
Sbjct: 468 ELEHLKRDFQQQQQREK 484


>gi|313225506|emb|CBY06980.1| unnamed protein product [Oikopleura dioica]
          Length = 446

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN-----LL 455
           DE++ I  NE   +     +  +   Q D      L  L  LEE   ++E D      L+
Sbjct: 213 DELLYISENEGDNEKTKRLKREMRGAQDD------LHRLPALEEVTEEAEQDEEVDKELV 266

Query: 456 AEKEKIDSLLNSGKQQWNQIA-CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            + +K+  +LN  K   + I+  EI+E++E+  +    G  R    + +   K   +   
Sbjct: 267 DQAKKMIEILNEKKNLRSAISQKEIKELEEVLERIEKKGWVRRLQEDYNEGQKLLARLRT 326

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLS 541
            EK    ++   +  I  ++S+     
Sbjct: 327 YEKMRHQIMALTQPTISEIRSYQYPPK 353


>gi|290970110|ref|XP_002668036.1| predicted protein [Naegleria gruberi]
 gi|284081094|gb|EFC35292.1| predicted protein [Naegleria gruberi]
          Length = 413

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 7/184 (3%)

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR-MQAIDRRVEILKG 392
           + +         ++          +    +   +R   + R+     ++  D  V I + 
Sbjct: 184 NNQNSIVEIKKAINNLCPVSCEYFETNTFDETWNRYNNVIRKVMEESIKFYDNYVNIKRL 243

Query: 393 LLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           +     NI E+   I    D+ K +  +       QVD  L  RL S +K E  ++  EL
Sbjct: 244 MDQQKTNIAELNTRIESYSDRLKEIQKTNIEKESEQVDYGLQ-RLYSEKKDEIKRLTQEL 302

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
           D L    +K      S  +   +   E+   +E       +  +R +          T++
Sbjct: 303 DALNLLIKKTQF---SRDELLKK-QKELDSEEEKQIFKEQISEKRNSILGWISYTAKTIE 358

Query: 512 QAMI 515
               
Sbjct: 359 YDAQ 362


>gi|148682678|gb|EDL14625.1| A kinase (PRKA) anchor protein (yotiao) 9, isoform CRA_a [Mus
            musculus]
          Length = 3843

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I        + + R   TE     +L+  ++  
Sbjct: 3021 LQKADRR--------SLLAEIEDLRAQINGG----KMTLEREQGTEKSSQELLDCSMQQK 3068

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + LE   ++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 3069 QSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3125

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3126 LEAFRSEVKEKTDEIH 3141


>gi|145539930|ref|XP_001455655.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423463|emb|CAK88258.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1366

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW---------LA 366
           K R        ++  +L     +F  N +        ++  L  ++KE            
Sbjct: 453 KQRDQVMKQFQDAKKILQKYNIQFNFNEDQQMDTYYNEIANLKNVVKEHEQRIFLLQSNN 512

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            +     RR    ++     +  L+        ID+   +  +E   K + +      E 
Sbjct: 513 DQLIKEARRDQKLLRQKQHELMRLEKRKQDVDQIDDDFELDDSEIIQKDLQIEEQ---EY 569

Query: 427 QVDAILNLRLR--SLRKLEEYQIKSELDNLLAEKEKIDSLLNS--GKQQWNQIACEIREV 482
           Q+  +  +++    L + ++     ++  L  EK K+   LN+     Q NQ+  +I E 
Sbjct: 570 QLQELDKIKIETIQLLQDDKQNYLKQISILEEEKAKLQKQLNTKQDSAQMNQLKFKISEY 629

Query: 483 KEIFSK 488
           +     
Sbjct: 630 ETKILD 635


>gi|152994691|ref|YP_001339526.1| TPR repeat-containing protein [Marinomonas sp. MWYL1]
 gi|150835615|gb|ABR69591.1| TPR repeat-containing protein [Marinomonas sp. MWYL1]
          Length = 811

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 94/246 (38%), Gaps = 10/246 (4%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES----IFMLSDMETRF 339
           E+IA+ ++ K   L +  R E A +V  +L  + +  D + + E+    +        + 
Sbjct: 519 EQIAKALVNKSAILGQLDRSEEAIEVSDILLERFKDSDVEAIQEAVSKALVNKGARLGKL 578

Query: 340 PL--NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                   +    + +    D +  +    R  +    +  ++   +  + +   LL  +
Sbjct: 579 GRLEEALAVYDALLERFQDSDELALQETMSRALMNKAITLVQLNRSEEAIAMYDALLERF 638

Query: 398 LNIDEI--IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            + DE+    +I N    K + +   + +E    A+ +  L   +  +E  I+ +L + L
Sbjct: 639 QDSDELALQELIANALMNKAITLGHLNFSEE-AIAVYDALLERFKDDDEVVIQRQLASAL 697

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC-EVSRADKATLQQAM 514
             K ++  + N  +Q    I   I  +KE + +   +         E + +D  +  + +
Sbjct: 698 CNKAELVLVGNGKEQSVKAIKEAIIFLKEGYRQHRSIMEMLNFIIDESTVSDVLSKIEDI 757

Query: 515 IEKEPI 520
            E E I
Sbjct: 758 PESETI 763


>gi|303233595|ref|ZP_07320253.1| relaxase/mobilization nuclease domain protein [Finegoldia magna
           BVS033A4]
 gi|302495339|gb|EFL55087.1| relaxase/mobilization nuclease domain protein [Finegoldia magna
           BVS033A4]
          Length = 456

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 69/217 (31%), Gaps = 16/217 (7%)

Query: 278 QKSRLIEKIAELII-AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
            K ++ E+I   +    +   +   +    +   I+    N  +      E         
Sbjct: 244 TKEKIKERIENKVNEDYKNSEIYYAKKSYKKFDNIIDIESNEKVKSSKGYEIWAR----- 298

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +  +N    ++ ++ +      ++ E       V  +     +  I    +++  +  A
Sbjct: 299 -KHNMNTMANTLNQLRKYGLSSSMVLETKLQEEAVNRQEI---LNKIKDVEKVMSEIYAA 354

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK----SELD 452
             +I+ I          K     +   +E +   I     +++  LE  Q K     EL 
Sbjct: 355 IEDINTIKINKVIYKTYKENPNDKDFYSEYKPQIIA--YEKAINTLERCQYKNLSIKELS 412

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            L  E +    +L       N +  E+ ++++   K 
Sbjct: 413 KLYDEYKNKKDILMDDYANKNILINELTQLRKNTDKY 449


>gi|300681022|sp|Q70FJ1|AKAP9_MOUSE RecName: Full=A-kinase anchor protein 9; Short=AKAP-9; AltName:
            Full=Protein kinase A-anchoring protein 9; Short=PRKA9
          Length = 3797

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I        + + R   TE     +L+  ++  
Sbjct: 2975 LQKADRR--------SLLAEIEDLRAQINGG----KMTLEREQGTEKSSQELLDCSMQQK 3022

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + LE   ++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 3023 QSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3079

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3080 LEAFRSEVKEKTDEIH 3095


>gi|125661048|ref|NP_919444.2| A-kinase anchor protein 9 [Mus musculus]
          Length = 3779

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I        + + R   TE     +L+  ++  
Sbjct: 2957 LQKADRR--------SLLAEIEDLRAQINGG----KMTLEREQGTEKSSQELLDCSMQQK 3004

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + LE   ++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 3005 QSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3061

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3062 LEAFRSEVKEKTDEIH 3077


>gi|72080984|ref|YP_288042.1| ABC transporter ATP-binding protein P115-like [Mycoplasma
           hyopneumoniae 7448]
 gi|71914108|gb|AAZ54019.1| putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma hyopneumoniae 7448]
          Length = 979

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 7/206 (3%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + ++++ +     +I L +  + ES E   IV   K    + D + E +  L   E +F
Sbjct: 198 EKQVKQLEKQAENAKIYLEKSKQLESVEVGLIVSDIKKYQTELDQVQEKLNDLKFQEPKF 257

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              +       +        I  E           R   R++     + +          
Sbjct: 258 ISEIEANEKIIITNTQKRSEIEAEIN------TKNREIHRLKEQINTLNLAYAKATQLQE 311

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR-SLRKLEEYQIKSELDNLLAEK 458
           +     I  N ++    +  ++SL   Q D    L  +  L+KLE  +  +      +E 
Sbjct: 312 MILSSEISVNFEQKMAALRQKYSLISAQKDNFAKLISQNKLKKLEIEEKLNTFRTQKSEI 371

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE 484
           E+    LNS K        E+++  E
Sbjct: 372 ERNLYSLNSEKIISQTRISELKKSLE 397


>gi|116629438|ref|YP_814610.1| chromosome segregation ATPase [Lactobacillus gasseri ATCC 33323]
 gi|282850852|ref|ZP_06260226.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1]
 gi|311110914|ref|ZP_07712311.1| cell division protein Smc [Lactobacillus gasseri MV-22]
 gi|116095020|gb|ABJ60172.1| condensin subunit Smc [Lactobacillus gasseri ATCC 33323]
 gi|282557804|gb|EFB63392.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1]
 gi|311066068|gb|EFQ46408.1| cell division protein Smc [Lactobacillus gasseri MV-22]
          Length = 1186

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 290 IIAKRIPLLEDIRDE---SAEDVRIVLFPKNRSLDPDLLMESI-FMLSDMETRFPLNMNV 345
           +    + L+ D RD    S ++  +V     R+ + D L+      L D+ T F  +   
Sbjct: 75  MNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMS 134

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +     +D IL      RR +         +     +   +    A   +D+  A
Sbjct: 135 SDSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKETALKQLDKTNA 186

Query: 406 -IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLA 456
            +IR  D  K +      L E    A         L+ +L+ L  LE   +  E  ++  
Sbjct: 187 NLIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKDVAK 246

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + +   ++L+    +  Q   ++ E ++  ++       +           A L   +  
Sbjct: 247 KAKANQAILDKLDDEVKQSQADLEEKRKQSNERHAEKDEKQQELLSLTQKLAALNTDLQM 306

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +      S    + + K ++     L  +
Sbjct: 307 HQQ-----SREYDVATQKEYNAQAEELKER 331


>gi|325118352|emb|CBZ53903.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1075

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 18/151 (11%)

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
           +++   AH  EV  +R         R + + +    A  N+D +++ +   +  +  +  
Sbjct: 361 LVRLQDAHDEEVHRQR---EEAEWQRELLLKEAEKNARRNLDNLLSKVTESEDARQKLTQ 417

Query: 420 RFSLTENQ-------------VDAILNLRLRSLRKLEEYQIKSELDNLLAEKE-KIDSLL 465
                E+Q               A+L   +  LR+ E    +    NL  EK+ +++ L 
Sbjct: 418 TLKDREDQLRAAEERAEASDVALALLEEEVAHLRR-ECEHERGVRKNLALEKDRELERLA 476

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
               Q+   +  ++ E  E    +    R R
Sbjct: 477 AEHAQEIQILKQQMAEQHEEHLAAFAEARER 507


>gi|158291035|ref|XP_312553.4| AGAP002399-PA [Anopheles gambiae str. PEST]
 gi|157018181|gb|EAA07922.4| AGAP002399-PA [Anopheles gambiae str. PEST]
          Length = 626

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           L  L +LE+  I+   + L  E  ++ ++  S ++   + A ++ E 
Sbjct: 526 LARLNELEKQAIEENNEELAKEIAELKAIAQSDEELLKRQAAKLEET 572


>gi|315231626|ref|YP_004072062.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
 gi|315184654|gb|ADT84839.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
          Length = 865

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
             +  +  ++K E+  L  + ++++ +L   + Q  +I  E+ E+ E   +  +L
Sbjct: 190 RSKSEQREKLKQEIQELKEKIKELEQILKKLEHQLGEIKRELDELNEKEKRYNEL 244


>gi|156101850|ref|XP_001616618.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805492|gb|EDL46891.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1747

 Score = 41.3 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 85/272 (31%), Gaps = 24/272 (8%)

Query: 240  VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
               YR      R        E  +    +++    Y   K++    +  L     +    
Sbjct: 752  KCIYRSCYLNIRNLYLLKKNEKVKFENKLMMRN--YGKLKAKYKNVLVNLCKKNLLIKYY 809

Query: 300  DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
             I+D+     +     ++   + + L+  I      +        +LS          + 
Sbjct: 810  SIKDKFQYSKKYENMMRHLQQEKNDLLSIIEEKKYEQENSLSINLMLSEELKKAQEDKEC 869

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI--------IRNED 411
            IL +   ++ E     +   +  + + ++ L+G L       E                 
Sbjct: 870  ILSKNFFYKSETDKAATKCEL--LQKELDRLRGELQCAKRESEQAKTGSGQVKLETEQLQ 927

Query: 412  KPKPVMVSRFSLTENQVDAI------LNLRLRSLRK------LEEYQIKSELDNLLAEKE 459
            + K  +       + Q + +      + ++   L++      LE+  +  EL +  A+  
Sbjct: 928  REKEQLRKEVDQMKMQTEQLRKEADQMKMQTEQLKRQAEQRQLEKDALVKELGDTKAKYF 987

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             +  +L   ++ ++Q   E+    E  ++  +
Sbjct: 988  NLTGILEGEEKMYSQKVQELERKIENLTEEKN 1019


>gi|326204033|ref|ZP_08193894.1| Recombinase [Clostridium papyrosolvens DSM 2782]
 gi|325985800|gb|EGD46635.1| Recombinase [Clostridium papyrosolvens DSM 2782]
          Length = 548

 Score = 41.3 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 12/217 (5%)

Query: 282 LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-MLSDMETRFP 340
           +I +I EL I       E  R+ +      +    +R  + ++    ++     +  R  
Sbjct: 280 IINQIEELRIISDETFQEAQREYTKRKEMYIT--ASRPSNANIFSNLLYCRNCGIAMRRK 337

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
                       +        +    H     +R S      I+R  + ++ L     ++
Sbjct: 338 KLWGWKRKDGTRKFGVEWVCTQHDKYHNDICQYRNSWHEDVLIERVKKEIEKLRENKGSL 397

Query: 401 DEIIA-----IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           D++ +        +E+  + +M  +  L E + +   NL+L S   ++E Q K + D L 
Sbjct: 398 DKMFSEYMQSFFSSEEVAEKIMELQTRLDEIKAEVSANLKLFSKSIIDEEQYKQQNDELQ 457

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
             K+ ID+ L   K+    I     EVK  ++   D 
Sbjct: 458 NNKKMIDTELAKIKR----IDHARNEVKRKYNNYVDF 490


>gi|238852588|ref|ZP_04642998.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4]
 gi|238834734|gb|EEQ26961.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4]
          Length = 1186

 Score = 41.3 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 290 IIAKRIPLLEDIRDE---SAEDVRIVLFPKNRSLDPDLLMESI-FMLSDMETRFPLNMNV 345
           +    + L+ D RD    S ++  +V     R+ + D L+      L D+ T F  +   
Sbjct: 75  MNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVRLKDVRTLFIESGMS 134

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
                +     +D IL      RR +         +     +   +    A   +D+  A
Sbjct: 135 SDSLGIISQGKVDEILNSKPQQRRGIF--------EEAAGVLHFKQQKETALKQLDKTNA 186

Query: 406 -IIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIKSELDNLLA 456
            +IR  D  K +      L E    A         L+ +L+ L  LE   +  E  ++  
Sbjct: 187 NLIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQLLGLEIESLNEEKKDVAK 246

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           + +   ++L+    +  Q   ++ E ++  ++       +           A L   +  
Sbjct: 247 KAKANQAILDKLDDEVKQSQADLEEKRKQSNERHAEKDEKQQELLSLTQKLAALNTDLQM 306

Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFK 546
            +      S    + + K ++     L  +
Sbjct: 307 HQQ-----SREYDVATQKEYNAQAEELKER 331


>gi|307721530|ref|YP_003892670.1| chaperone protein DnaK [Sulfurimonas autotrophica DSM 16294]
 gi|306979623|gb|ADN09658.1| chaperone protein DnaK [Sulfurimonas autotrophica DSM 16294]
          Length = 629

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTE--NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +EI  ++++ +  K    +R ++ E  NQ DA++    +S+ ++ E     E   + A  
Sbjct: 505 EEINKMVQDAEAHKAEDEARKAVVELKNQADALIAQTEKSMTEMGENLAADEKAKIEAAI 564

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             +  +L        QI  +++ + E   K  +   ++    E      +  ++     E
Sbjct: 565 TDLQEVLKDDNATKEQIEEKVKVLTEASHKMAEQMYKKEQGGEAGAGADSAKKKD---DE 621

Query: 519 PIT 521
            + 
Sbjct: 622 DVI 624


>gi|256544785|ref|ZP_05472157.1| surface protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399674|gb|EEU13279.1| surface protein [Anaerococcus vaginalis ATCC 51170]
          Length = 784

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 77/252 (30%), Gaps = 18/252 (7%)

Query: 284 EKIAELIIAKRI--PLLEDIRDESAEDVRIVLFPKNRSL---DPDLLMESIFMLSDMETR 338
            KI +L    +     ++D+ D+  ED   +   K +     D    ++      + E R
Sbjct: 297 NKIDDLTKNIKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAKLEEEIR 356

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA-Y 397
              N        +  +   +         + +   +R     + +       K  L A  
Sbjct: 357 DKDNKIAQLNKEIEDLKNSNNDELVAEITQLKDELKRLQDENEKLKEDYSSTKWELEAEK 416

Query: 398 LNIDEIIAIIRNEDKP----------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
            N D+    I+   +           K   +         ++  L+ +   ++ LE  + 
Sbjct: 417 ENTDKNENKIKEMQEKLESLEGELAKKTKEIEDKDNRIKDLEKALDEKDTKIKDLESKKK 476

Query: 448 KSEL--DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           + E        + E++   ++S K+   +   E+ +  +   +            +    
Sbjct: 477 EIEKTKSECCKKIEELQKAIDSLKESSEKTKKELEDKIKELEEKQKSSDEEIKKLKKELD 536

Query: 506 DKATLQQAMIEK 517
            K    + +IE+
Sbjct: 537 KKIEEAKKLIEE 548


>gi|313127099|ref|YP_004037369.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
 gi|312293464|gb|ADQ67924.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
          Length = 894

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 380 MQAIDRRVEILK--GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
           +  ++ ++E  +  GL      ++  +  + ++ +       +   T    + +L     
Sbjct: 189 LSKVESQIEAKEDAGLHERLNALETELGEVDDQIERYEDQREKAVETRENAEEVLE---- 244

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK---EIFSKSTDLGR 494
                   + ++ELD L  +   +   + S +++   +  E+ E +   E      +  R
Sbjct: 245 -----TYREKRAELDELAEDIADLRETIESDERKRETLRSEVGEARDSVEEIRDRIEKKR 299

Query: 495 RRTTFCEVSRADKATLQQAMIEKE 518
             TT  EV+    A  +  + E+E
Sbjct: 300 AETTLDEVTSDAIAARRDELDERE 323


>gi|86562857|ref|NP_498427.2| hypothetical protein F23F12.8 [Caenorhabditis elegans]
 gi|90109796|sp|P46504|YLX8_CAEEL RecName: Full=Uncharacterized protein F23F12.8; Flags: Precursor
 gi|71533417|gb|AAZ32811.1| Hypothetical protein F23F12.8 [Caenorhabditis elegans]
          Length = 980

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           T       V   G+          L   + H++ V  R+   + + +++     +    A
Sbjct: 274 TTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKTVSERQQQEKFEKMEQERLRQEKEEKA 333

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA--------ILNLRLRSLRKLEEYQIK 448
                E    +   +  +   + R +    + +         +  +RL   ++  E   +
Sbjct: 334 REL--ERRRKLEESETARQAELDRQATIYAEQERMAMERNRELERIRLEEKKRENERVRQ 391

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            E+   +++  +++ L    +++  ++  E+   ++   K  +  R+R    +    ++ 
Sbjct: 392 EEIAMEISKIRELERLQLERQRKNERVRQELEAARKY--KLQEEERQRKIQQQKVEMEQI 449

Query: 509 TLQQAMIEKE 518
             Q+   +++
Sbjct: 450 RQQEEARQEQ 459


>gi|167042367|gb|ABZ07095.1| putative RecF/RecN/SMC N terminal domain protein [uncultured marine
           crenarchaeote HF4000_ANIW97M7]
          Length = 686

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 39/260 (15%)

Query: 230 GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL--IEKIA 287
           G     + SI+E+      G   R    +E+V R      VT+I ++V   +   I+KI 
Sbjct: 29  GENGAGKSSIIEAITFALFGKTTRG--AIEDVIRDGETQAVTQIYFEVNGKKYQAIKKIH 86

Query: 288 ------ELIIAKRIPLLEDIRDESAEDVRIV-LFPKNRSLDPDLLMESIFMLSDMETRFP 340
                 EL+    +P+ +     S E  +I+ L      +   +    +  +   +    
Sbjct: 87  GSTSPQELLDDNSLPIAKGKEKVSEEIKKIIGLDYDTLGIASIVPQGQLTEIIQSDNGIK 146

Query: 341 LNMNVLSMGRVPQVMPLDGILKE-WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           L   +  +    +    +  L E   A R  +  + ++      + ++EI          
Sbjct: 147 LRSLIDKVIGTGKYSAAEKGLGEGITAFREYLTEKYNNTDEDVENVQMEINHA------- 199

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
                  I    KP+   +   + +                K +  +++ + + L    E
Sbjct: 200 -----EKIIANSKPQKEKLEEMAESF---------------KEKIKKLQEKKEELSVNYE 239

Query: 460 KIDSLLNSGKQQWNQIACEI 479
           KI  L +     W  I  EI
Sbjct: 240 KIIHLKDKEDNVWKSIKQEI 259


>gi|126331014|ref|XP_001368252.1| PREDICTED: similar to centromere protein E [Monodelphis domestica]
          Length = 2638

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 100/272 (36%), Gaps = 11/272 (4%)

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-IIAKRIPLLEDIRDESAEDVRIVL 313
            +   E V +   CI   E   +   ++L EKI EL    +++  + +  +++ E+++ V 
Sbjct: 1488 KEHQETVDKLKECISEKE-DIEKTSAQLQEKIQELQTNQEQMFSVREEINKTQENIKEVE 1546

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
              K + +  +  +E I M  ++E    L  ++  +  V +       ++E     R+ L 
Sbjct: 1547 QLKEQLMSKESSLERIEME-NLELAQKLQASLEEINSVAKERDELTKIQEAFYIERDQLK 1605

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
                     I       + +       +E    ++  ++ K  ++S+ S  E      L 
Sbjct: 1606 EAIRDLRAKIQELESKQEQMFNVREEDNEAQEKMKEMEQLKEQLISKESTLERISLENLE 1665

Query: 434  LRLRSLRKLEEYQIKSE--------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            L  +    LEE    +E         + L  E++++   +   + +  +I  E+R  ++ 
Sbjct: 1666 LAQKLQASLEETTSVAEERDELTKIKEALHIERDQLKETIRDLRAKDLEIQEELRIAQKS 1725

Query: 486  FSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
              +  +   +           + T  Q   + 
Sbjct: 1726 LKEHQETVDKLKECISEKEDVEKTSAQLQEKD 1757


>gi|145504270|ref|XP_001438107.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405268|emb|CAK70710.1| unnamed protein product [Paramecium tetraurelia]
          Length = 682

 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 80/219 (36%), Gaps = 6/219 (2%)

Query: 284 EKIAELIIAKRIPLLEDIRDE---SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           E+I  L    +   ++++  E     E+   +     +S   + +++     +  E +F 
Sbjct: 165 EEIQNLKHDIKYTKIQELEKEINVFQEETLRLRTLLEQSQRNEQIIQMTHDFNQFEEKFY 224

Query: 341 LNMNVLSMGRVPQVMPLDGI-LKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKGLLIAYL 398
           + M +++  +         I +++    + +         +    + ++ + + L     
Sbjct: 225 IQMQIINSLKQENSFYQGQISIEQEEKFKLQNQIDTDQKVLNKQKQVIDDLQQTLKDKLA 284

Query: 399 NIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
            ID +   +   +D  + ++     L  NQ+  I  +++    + E  Q   +++ L   
Sbjct: 285 YIDGLQQELDAYKDTNQNLIQKANKLDNNQLRIIGLVKIEQELRKELQQKTRDIEYLDKT 344

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
             ++   LN       +I  +++E  +    + +    +
Sbjct: 345 TTELKQKLNEKSSMEAKIKDQLQEELKKLKLAYEELDEK 383


>gi|313226141|emb|CBY21284.1| unnamed protein product [Oikopleura dioica]
          Length = 4621

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 71/280 (25%), Gaps = 32/280 (11%)

Query: 286  IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
            IAEL       + +    +    +R ++           ++ +I   S  +    L   V
Sbjct: 2728 IAELKNGLARIVKQPESSQKHHHLRAIVEL---------VLVAIKRNSPPQKEDSLRSVV 2778

Query: 346  LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
             S+           ++K  +A                +   + I+   L     +  I  
Sbjct: 2779 RSLPDKDINSLSITMVKRGVAQDLARTIHTLDLSSPHLSLTLNIIFRALETLSKVTGIAI 2838

Query: 406  IIRNEDKPKPVMVS-------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
             I+++   K                     L   Q    L  R   L   E    +   +
Sbjct: 2839 NIKSDANAKKSKSGAASTSASARSESPEMRLPSVQAARDLEQRFPELMAAEREMRQQANE 2898

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             L+      + +  S +++   I           +        R    +  +      + 
Sbjct: 2899 ALMGIIAAEEQIQESRRRRQILID----------AMPPPANPDRILEQDTDQGSNMEYED 2948

Query: 513  AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
               ++E I               +  D    ++ E D L 
Sbjct: 2949 EQSQEESIVAETDTEDLPELQDLYQADGHGQNYTENDFLL 2988


>gi|71894005|ref|YP_279451.1| putative ABC transporter ATP-binding protein P115-like [Mycoplasma
           hyopneumoniae J]
 gi|71852132|gb|AAZ44740.1| putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma hyopneumoniae J]
          Length = 979

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + ++++ +     +I L +  + ES E   IV   K    + D + E +  L   E +F
Sbjct: 198 EKQVKQLEKQAENAKIYLEKSKQLESVEVGLIVSDIKKYQTELDQVQEKLNDLKFQEPKF 257

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              +       +        I  E           R   R++     + +          
Sbjct: 258 ISEIEANEKIIITNTQKRSEIEAEIN------TKNREIHRLKEQINTLNLAYAKATQLQE 311

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR-SLRKLEEYQIKSELDNLLAEK 458
           +     I  N ++    +  ++SL   Q D    L  +  L+KLE  +  +       E 
Sbjct: 312 MILSSEISVNFEQKMAALRQKYSLISAQKDNFAKLISQNKLKKLEIEEKLNTFRTQKGEI 371

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE 484
           E+    LNS K        E+++  E
Sbjct: 372 ERNLYSLNSEKIISQTRISELKKSLE 397


>gi|242020032|ref|XP_002430461.1| highwire, putative [Pediculus humanus corporis]
 gi|212515607|gb|EEB17723.1| highwire, putative [Pediculus humanus corporis]
          Length = 2620

 Score = 41.3 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 12/150 (8%)

Query: 539  DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA-YTLPAGNLLSGRGHGEAIQLLIDLN 597
                L+F   D +   +     +  L+ +T GK  Y+  A ++    G        + + 
Sbjct: 920  GNKTLNFDFDDEILSIVSGK--EFGLIRTTSGKVFYSGKASSIGMKSGVSSGRWSELVMP 977

Query: 598  HNQDIVTAFVYDSTCKLLVVSSKGNAFIV------EESEIIANTRKGKTFL---KVSSEE 648
                     V       ++V+  G+ F        E+ ++    R+ K       V  E+
Sbjct: 978  KGAKAQHISVGHEGLHAIIVAEDGSVFFCGTARRGEDGDLNKARRQPKAVKPKKMVKVED 1037

Query: 649  KMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678
            +  +         A+V  N +LL+F  D +
Sbjct: 1038 EYIVHAATNNGTTALVTRNGQLLMFGKDTV 1067


>gi|124809185|ref|XP_001348511.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
 gi|23497406|gb|AAN36950.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
          Length = 1788

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 124/355 (34%), Gaps = 25/355 (7%)

Query: 187  MATSIPSHNVQEICEAALALIDNPEISIEKLLEYII-----GPDFPTGGIIVESRESIVE 241
              ++I +    ++      +    E    +LL+++I             I      +I  
Sbjct: 840  KVSTISACEKSDVNVTTNGISRCHEDKYNRLLKFLIKSVKNNIKLKNKSIYKRCYLNIRN 899

Query: 242  SY---RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
             Y   +  +  F  +         +  +  V+  I  ++   +      +L   K+   +
Sbjct: 900  LYLVKKNDKIKFENKLLERNYNKIKTKYRNVLVNICKKIFLLKYYSAKDKLHFNKKYENM 959

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
                     D+  ++  K   L+ ++ +  I +   ++       ++++     +    +
Sbjct: 960  MRHLQLEKNDLLSIIEEKKYELENNVNLNHI-LSEQLKKNQEEKEDIINKNFYYEQQVDN 1018

Query: 359  GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI----DEIIAIIRNEDKPK 414
               K    H   +  +    ++Q  +  ++  K  L+   +I    ++++     E K K
Sbjct: 1019 VTKKYEHLHNDVITLKEEIEQLQKDNHALKKNKEQLLNENDIMKKENDMLKKELGETKAK 1078

Query: 415  ----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                  ++       +Q    L  +L+ +     Y+  + ++++  E +K   L+N   +
Sbjct: 1079 YFNLTGILEGEEKMYSQKVEELEEKLQKVT----YEKNNMINDIKDEIDKFTILINEKDK 1134

Query: 471  QWNQIACEIREVKEIFSKS----TDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +  +I  +++E+K +  K      +    +  F E     +  L + + +++  T
Sbjct: 1135 ENMRIKDKLKELKNVEEKYKNTQKNFDSLKKEFEESFEQVQIILNEMIQKEKEYT 1189


>gi|298736616|ref|YP_003729142.1| type I restriction enzyme subunit R [Helicobacter pylori B8]
 gi|298355806|emb|CBI66678.1| type I restriction enzyme, R subunit [Helicobacter pylori B8]
          Length = 758

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 32/231 (13%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
                  +++  D+  +     +     ++     M  +  +S       +N N++    
Sbjct: 453 RETLEKDIKNAYDDLFDYPIDDIEGMTSAIVSMSAMNELLKISHAINTLKINYNLIRASS 512

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             +++ L                +    ++  I   +      L A  NI+E        
Sbjct: 513 DEKILSLKE--------------KMDIEKINKISSMLHQKAKYLHALKNINEP------- 551

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                       L    + A+L+ ++    K  +     E + + A+ ++   +L   ++
Sbjct: 552 ----KNPNDLMIL--EDLIALLDFKIE--FKESKELHFKEKEEITAKYKQAKEIL---EK 600

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             ++   EI++  + FSK          F E+S +  A + Q    KE  T
Sbjct: 601 IPDKQDKEIQKFYKDFSKLLQTPATSQNFEEISHSYDAIISQLKQHKEQTT 651


>gi|167463706|ref|ZP_02328795.1| hypothetical protein Plarl_14314 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 695

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 40/212 (18%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +L+EK  EL+   R   ++                K R       M  +          
Sbjct: 170 EKLLEKREELMDKTRKKFIKLYEK-----------IKERHAYYKKRMNEL---------- 208

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL----KGLLI 395
               ++     +  V  L   ++           RR       ID R+E +    +    
Sbjct: 209 ---GSMADELGIHTVDSLKQEVQSVRD-----SIRRLQEEADKIDGRMESIRDAAETAKE 260

Query: 396 AYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            + ++D+    I  +  + +  + S   L E  V     +++     ++    + E   +
Sbjct: 261 EWEHLDKSKEQISKDLTEAQQKLSSFEHLFEVAVQYFAAIQI-----IKGEVKQDE-KQI 314

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
              +E++  +L   K+  +++  E+++VK+ +
Sbjct: 315 HELQEELQPILTDAKKANDELNGELQKVKDAY 346


>gi|322796228|gb|EFZ18804.1| hypothetical protein SINV_13511 [Solenopsis invicta]
          Length = 446

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 83/257 (32%), Gaps = 17/257 (6%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR-FPLNMNVLSM 348
           I   +       ++    +  +  F           M+ +               N +  
Sbjct: 197 IEDNQSEKQVKYQELRKREEMMEEFMLTYEQSKQEEMDKLEKFEREIVNKLETVANAVEN 256

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                      IL++   +       R     + + +    ++        ++E + +  
Sbjct: 257 NEYLTEAEEAAILRDKFPYNDYEAAHR-EDDFEELKKDYATMQKTFNRLRILEEKLQLES 315

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK---LEEYQIKSELDNLLAEKEKIDSLL 465
            + K K        L + Q + I+   L  L+    LE  ++ +E + +++E+ K +  L
Sbjct: 316 KQMKEK--------LKKQQSELIVLEDLDGLKTRNELERDELITEREEIMSEQSKCEDEL 367

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            S + ++N    E++E  E ++   ++        ++   +K   +    EKE +     
Sbjct: 368 KSLRVEYN----ELKEQVEKYAIYPEISTLEDKLEKLKEDNKKIEEVIAKEKERVDCEPL 423

Query: 526 NRGWIRSLKSHSVDLSA 542
                + +  +S  L  
Sbjct: 424 KEKAFKLINDYSAKLQE 440


>gi|145503934|ref|XP_001437939.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405100|emb|CAK70542.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3039

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 63/204 (30%), Gaps = 9/204 (4%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           E+      P          +D +++  P +   + + L+       D       N  + S
Sbjct: 635 EVTNTPENPKYTQFAKHKTQDGKLITIPLDIIKNYEYLIREKENEIDELKNELANQGLQS 694

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +    Q   ++   ++    + +      ++     D+   I +         D I  ++
Sbjct: 695 IPLNFQSGNMESNEQDNNNFQLQAQGTDQNYEQNPEDQGATIEQLQKKIRTKDDYIQMLL 754

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
              ++ K        L+E Q    L +  R         +  +   +      ++S L +
Sbjct: 755 EQIEELKQFGT----LSEEQQREKLEINQRK-----SDDLVKQNMEIADLIIDLESKLAN 805

Query: 468 GKQQWNQIACEIREVKEIFSKSTD 491
            K +  +I  ++    + ++    
Sbjct: 806 RKIENEEIKKQLEAANKEYNDQQQ 829


>gi|326474552|gb|EGD98561.1| dynactin [Trichophyton tonsurans CBS 112818]
          Length = 1352

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 29/245 (11%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           GS  +V  E+     K +++EK       +++ ++E  R E  +   I+   + +     
Sbjct: 297 GSNMLVQKELDDLKTKLKIMEK-KRAEDREKLKMVETYRAERDKFETIIQKLREKYQPQQ 355

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             + ++      E  + +            ++ +  + +E           ++ +    I
Sbjct: 356 QEITTLRKQL-KEAEYRVEEVERLQAEHESILEMAALDREMAE--EVAESIKAEYEALKI 412

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                 L+  ++   N D++  I+  E+K     +      E   +A+  +RLR + + +
Sbjct: 413 RTEELELEVEVLKEEN-DQLGQIMSPEEKSSQGWLQMERTNERLREAL--IRLRDMTQQQ 469

Query: 444 EYQIKSELDNLLAEKEKI-----------DSLLNSGKQQWNQ-----------IACEIRE 481
           E  +K ++  L  E +             + LL S     +            +  E+ E
Sbjct: 470 EADLKDQVKELEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTE 529

Query: 482 VKEIF 486
               +
Sbjct: 530 KNMQY 534


>gi|260942823|ref|XP_002615710.1| hypothetical protein CLUG_04592 [Clavispora lusitaniae ATCC 42720]
 gi|238851000|gb|EEQ40464.1| hypothetical protein CLUG_04592 [Clavispora lusitaniae ATCC 42720]
          Length = 808

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 28/280 (10%)

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVE---EVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           I +ES+++++++ +L +    +          E+ +         IPYQ  K     +I 
Sbjct: 506 IPLESKQALMDACKLTKLSSTLSPVAIQRQGVELSKKYGQSQWKYIPYQPNKLSKKGQIK 565

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLF---PKNRSLDPDLLMESI--FMLSDMETRFPLN 342
           E +  +    + DI          ++      +   + + LM+ +    +   +TR  + 
Sbjct: 566 EQVQFRLDKGIRDIVRRGVRPDYFIIENTLKNSNEQNREALMKLLPAIRMEKYKTRLEIF 625

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID---------RRVEILKGL 393
             +LS     Q+      ++E L    ++L  R        D            E+    
Sbjct: 626 HLLLSQPSKQQLRNFVSSIEETLNTSDKLLLARRLINENLYDVASSLLATVNDAELNDSR 685

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN--------QVDAI---LNLRLRSLRKL 442
            +  LN+     I RN+       ++ F L E         Q   I   L  ++R+    
Sbjct: 686 QMVKLNLSLRNNIARNDFNACVNDIAEFPLDEITLSPFIYKQCQYIEKNLARKIRASEAN 745

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           E   +   LD + A   K+  LL     +  Q   +IR++
Sbjct: 746 ENSPLFGRLDIMKATLAKLKGLLGDIAARLEQDKVDIRQM 785


>gi|195144172|ref|XP_002013070.1| GL23583 [Drosophila persimilis]
 gi|194102013|gb|EDW24056.1| GL23583 [Drosophila persimilis]
          Length = 1267

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 623 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQLLNCREQE 679

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 680 LVARKDMLLWEKTNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 734

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  E 
Sbjct: 735 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEEI 787

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 788 AEKERILNASTSKIAKVDETMLEIQAQLE 816


>gi|118470527|ref|YP_888454.1| IclR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171814|gb|ABK72710.1| transcriptional regulator, IclR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 265

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 17/142 (11%)

Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602
           L  +EG  L   +   ++  + +    G+   +P          G+ +   +     + I
Sbjct: 102 LAVREGLQLTYLVVMTSSHSVQMYGEVGQ--QIPLH----ATSQGKVVLAFLPPGVGERI 155

Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE-----KMKLVVKVT 657
           +            + ++K      E  E +   R+    L +   E         V+  +
Sbjct: 156 IDQLELARYTPSTITTAK------ELHEAMYEIRRDGYALNLEERELGVRSVAAPVLDPS 209

Query: 658 GDHVAVVGENRKLLIFSIDQIP 679
           G+ VA V     +  FS D + 
Sbjct: 210 GNVVASVCVGGPIFRFSEDDLR 231


>gi|87311636|ref|ZP_01093753.1| cation/multidrug efflux pump [Blastopirellula marina DSM 3645]
 gi|87285639|gb|EAQ77556.1| cation/multidrug efflux pump [Blastopirellula marina DSM 3645]
          Length = 1085

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 15/247 (6%)

Query: 259 EEVGRGSWCIVVTEIPY-----QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
           E        IV+  +PY     +  +S + EKI E +       ++ +   +  D   V+
Sbjct: 36  ETFPEFELEIVLVTVPYPGASPEEVESGICEKIEEAVKDTV--GIKKMTSVANNDYGAVI 93

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--LDGILKEWLAHRREV 371
              N  +D   ++  +    +    FPL      + ++         G+L   + H    
Sbjct: 94  LELNADVDAQRVLNEVRGDVERIPSFPLLAEDPEVQQITLRESAITVGVLAPDVEHPSAE 153

Query: 372 LFRRSSFRMQAIDRRV--EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +  R     + I   +               D  I I   ED  +   ++   ++E   D
Sbjct: 154 MEWRLRDLAEEIRVELLALPNVSQAEVSGAKDYQIDIEIEEDTLRRFGLTLKQVSEIVRD 213

Query: 430 AILNLR--LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             L +   L      E     +   ++  E  K+  +             ++  V++ F 
Sbjct: 214 ENLEMPGGLIRTASQEVLVRGNNKRDIGREIAKLPLIKTQDGVVLTV--GDLAVVRDDFD 271

Query: 488 KSTDLGR 494
             T   R
Sbjct: 272 DVTSFQR 278


>gi|242813279|ref|XP_002486135.1| GDP/GTP exchange factor Sec2p, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218714474|gb|EED13897.1| GDP/GTP exchange factor Sec2p, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 684

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 61/176 (34%), Gaps = 10/176 (5%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                +     ++   +  +     LD  L            R      +    R +I  
Sbjct: 79  HHPDLSSEVATLSAKLVQAINNQTSLDDSLSATRQELEAAQERLLELESENEKYRTDIAS 138

Query: 392 GLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLR-------K 441
           G+++   +I+  I  ++N   E++ K  +  +      Q    L   L           K
Sbjct: 139 GVMVKRSDIEAEILSMKNALDEERAKRSVAEKEKREMEQELETLTAALFEEANKMVAAAK 198

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            E   ++ + + L A+ +  ++L+ S ++Q  ++   ++E++    ++       T
Sbjct: 199 QEREAVEKKNEQLRAQIKDTEALVASQEEQLAELKTVMQEMQSTRDENDTTPNPST 254


>gi|119908705|ref|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus]
          Length = 3079

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 104/298 (34%), Gaps = 21/298 (7%)

Query: 277  VQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSD 334
            V+ S   E++ +L        +    DE         +   + R+      +E++     
Sbjct: 2068 VRLSSTQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKVETLERELQ 2127

Query: 335  METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
            M       + + +     +V  L   ++      +++     + R +  +   ++ +   
Sbjct: 2128 MAEENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQG 2187

Query: 395  IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR-------------K 441
             A   +D +++ ++N  + K     +          +L  +LR L              K
Sbjct: 2188 QA-SELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWK 2246

Query: 442  LEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI--FSKSTDLGRRR 496
            +EE  +     E+  L    EK+   L+  K++  QI  +++E +    F K T     R
Sbjct: 2247 VEEQSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLER 2306

Query: 497  TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                     +  TL+    + E  T+  +     ++L+   +DL  +  ++ D  K  
Sbjct: 2307 ELKLSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKEL 2364


>gi|125774121|ref|XP_001358319.1| GA19039 [Drosophila pseudoobscura pseudoobscura]
 gi|54638055|gb|EAL27457.1| GA19039 [Drosophila pseudoobscura pseudoobscura]
          Length = 1267

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 623 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQLLNCREQE 679

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 680 LVARKDMLLWEKTNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 734

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  E 
Sbjct: 735 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEEI 787

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 788 AEKERILNASTSKIAKVDETMLEIQAQLE 816


>gi|110800073|ref|YP_695594.1| putative helicase [Clostridium perfringens ATCC 13124]
 gi|110674720|gb|ABG83707.1| putative helicase [Clostridium perfringens ATCC 13124]
          Length = 1069

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 21/184 (11%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR-REVLFRRSSFRMQAIDRR 386
            +   S +   F  N  +     +  +  L   LK    +   +   R    ++      
Sbjct: 310 QLEYYSPIHKLFLKNNTITYKKSLESLRNLLEELKNISKNIVLDENIRVFKEKLMKTTFN 369

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           +   KG +   + ID    II      K     R   +E     I   +L   + ++  +
Sbjct: 370 LYKNKGKIYCNVKIDYCGYIIDLIRDEKDNSFLRDLKSE---KYI-EFQLERFKFIKREE 425

Query: 447 ------IKSELDNLLAE-KEKIDSL----LNSGKQQWNQ-----IACEIREVKEIFSKST 490
                  + E+  L ++  +++  L    L+   +++       I+ E++E    +    
Sbjct: 426 DFCFIGNEEEIYELFSKGIKRLRELGEVLLSEELKEFKVLDSSLISSELKEFSNFYKLKF 485

Query: 491 DLGR 494
           D G 
Sbjct: 486 DFGD 489


>gi|194228673|ref|XP_001917363.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           1 [Equus caballus]
          Length = 1069

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 115/334 (34%), Gaps = 21/334 (6%)

Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259
            E    L +    + E+L+  +   +     +     +   +         +  +   + 
Sbjct: 134 LERCSLLEEELGATHEELM-ILKEQNNQKKTLKDGVLDVNRKQENTRSTNGKRSSNGSLS 192

Query: 260 EVGRGSWCIVVTEIPYQVQKSR--LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
           +    +  I + E+  +  + +  + E++A L  +  +  LE+  D +A    I     N
Sbjct: 193 QEEDLAKVIELQEVIDKQSREQRQMKERLAAL--SSHVTELEEDLD-TARKALIKSEEMN 249

Query: 318 RSLDPDLLMESIFMLSDMETRFPL--NMNVLSMGRVPQVMPLDGILKEWLAHRREVLF-- 373
             L  D + E++    DME R        + +      V  L+  L+  +AH+  V    
Sbjct: 250 TKLQRD-VREAMAQKEDMEERITALEKRYLAAQWEATSVHNLNDKLENEIAHQDSVHRQT 308

Query: 374 ----RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
               RR   R++  +++++           ++  +A                     Q++
Sbjct: 309 EDKNRRLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKAEERHGNIEERLRQME 368

Query: 430 AILNLRLRSLRK-LEEYQIKSELDN-LLAEKEKIDSLLNSGKQQWNQIACEI--REVKEI 485
           A L  + + L++  +  ++  E +  L    +K+ S   S ++    +   +   E K  
Sbjct: 369 AQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLS--ESDERLQLHLKERMAALEDKNS 426

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             +  +  +++    +  +       +A+  +  
Sbjct: 427 LLREVENAKKQLEETQHDKDQLVLDIEALRAELD 460


>gi|297484401|ref|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296478914|gb|DAA21029.1| hypothetical protein BOS_16210 [Bos taurus]
          Length = 3079

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 104/295 (35%), Gaps = 20/295 (6%)

Query: 278  QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                 + ++ + I   R+ +  D + +     ++    +      D + E++     M  
Sbjct: 2072 STQEEVHQLRKGIEKLRVRIEADEKKQLHVSEKLKESERRNDSLQDKV-ETLERELQMAE 2130

Query: 338  RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                 + + +     +V  L   ++      +++     + R +  +   ++ +    A 
Sbjct: 2131 ENQELVILDAENCKAEVETLKTQIELMTERLKDLELDLVTIRSEKENLLKQLQEKQGQA- 2189

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR-------------KLEE 444
              +D +++ ++N  + K     +          +L  +LR L              K+EE
Sbjct: 2190 SELDTLLSSLKNLLEEKEREKIQTKEEAKSAVEMLQTQLRELTEEIAALCDDQETWKVEE 2249

Query: 445  YQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI--FSKSTDLGRRRTTF 499
              +     E+  L    EK+   L+  K++  QI  +++E +    F K T     R   
Sbjct: 2250 QSLDSPAQEVQQLRNNIEKLKVHLDIDKKKQLQILEKLKESEHQADFLKDTVENLERELK 2309

Query: 500  CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                  +  TL+    + E  T+  +     ++L+   +DL  +  ++ D  K  
Sbjct: 2310 LSGENQEHVTLEAEKSKAEVETLKATVEKMDQNLRGLQLDLVNIRSEKEDLTKEL 2364


>gi|332031066|gb|EGI70652.1| E3 ubiquitin-protein ligase LRSAM1 [Acromyrmex echinatior]
          Length = 572

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 93/303 (30%), Gaps = 41/303 (13%)

Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQ----VQKSRLIEKIA--E 288
           S + +   Y       +   +  + EV +        EI  Q      + +L+E +A  +
Sbjct: 167 SSDDMQTIYHNKSNDVQEHRQNALLEVEKNIKQQQEYEIEMQSMLKAHRKKLLEDVALQQ 226

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF--------- 339
           + + + +  ++  RD +   +   +    +  D +++ E +    +              
Sbjct: 227 IQLEQELEKVQQERDTNRARLLSYIHNAEKEAD-NVIKEFLKNSEEERQSQAELVEREKQ 285

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
                + S      ++     L        E + R   +      R   +   L +   N
Sbjct: 286 EEMQLLSSCHSEQFLLRTKDTLFAMEKLLDEEMCRTRKWEEHTKYRDCTVQSLLTLEVRN 345

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTE---------------------NQVDAILNLRLRS 438
            D +  I+ +++K +  ++ R    E                      Q   ++  +L +
Sbjct: 346 NDHLAQIVHDQEKSRQDLIDRLRRDEVLQKAAVAALLERSDARSWSIIQQMNLVQSQLAA 405

Query: 439 LRKLEEYQIKSELDNLLAEKEK----IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           L  +E  + K E+   L E       +  +L    +Q      ++ E      +   +  
Sbjct: 406 LTNIELERRKLEITQQLNEIADKRVALTDILVDLLEQQTNRRAQLLETINTIEQQRGISN 465

Query: 495 RRT 497
            R 
Sbjct: 466 VRR 468


>gi|118093369|ref|XP_421895.2| PREDICTED: similar to kendrin [Gallus gallus]
          Length = 3521

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 29/289 (10%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   V+     E++ +    + + E   Q Q   +I K+   +   R    +   + S  
Sbjct: 137 GRLTVQMNELQEQLSQHRDSMQLQETTIQEQNE-VIRKLTSCLQQTRKDWDDLQEEASHV 195

Query: 308 DVRIV----------LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             +I           +  K++      ++E+   +S  ++        L M         
Sbjct: 196 ADQIHGLQLQLHEVNVMLKSKGSGKKEVLEAQQQMSLFQSSLQEQNARLEMLHQRAYDLE 255

Query: 358 DGILK----EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             +          H RE+    +  + +  + R E+ K  L     + + +A     +  
Sbjct: 256 VQLESSQKVHEREHDREISELIAKHKEEMEELRAELHKEKLHLLDELQQQMAATHKAEIE 315

Query: 414 KPVMVSRFSLTENQVDAI-----------LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              + S  +L   +++A+           L L   +LRK +E  +    + L  ++ +  
Sbjct: 316 YAQLQS-QTLHSLELEALRLSLNNLHTSQLELTQSNLRKEKETALVELREMLNDKRAQEI 374

Query: 463 SLLNSGKQQ-WNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509
           ++L S  Q  W +I    ++E +++ SK       +    E+   +K  
Sbjct: 375 AILQSRHQLEWEKIKERCLKEKEDLTSKYQQELVDQRKKIELEMEEKHI 423


>gi|12655864|gb|AAK00630.1| ninein isotype 3 [Homo sapiens]
          Length = 2073

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 585 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 644

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 645 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 701

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 702 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 759

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 760 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 819

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 820 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 879

Query: 486 FSKSTD 491
             K+  
Sbjct: 880 LEKTYK 885


>gi|311246307|ref|XP_001925689.2| PREDICTED: centriolin, partial [Sus scrofa]
          Length = 1863

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 25/268 (9%)

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD----------- 321
            +P        + ++ E++   +    E     S       +   + ++D           
Sbjct: 850  VPEHHNLENEVSRLEEIMQHLKSKKRERWMRASKRQSEKEIEELHHNIDDLLQEKKDLEH 909

Query: 322  -PDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
              + L  +I      +     N++ L   +     +   + I+ E     + +L RR+  
Sbjct: 910  EVEELHRTIQKHQQRKDFIDGNVDSLMNELEIEKSLKHHEDIVDEIECIEKTLLKRRA-- 967

Query: 379  RMQAIDRRVEILKGLLIAY---------LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
             ++  DR +   +  L               D    +++ E   + +         N V 
Sbjct: 968  ELREADRLLAEAESELSCTTEKTKNAVEKFTDAKRNLLQTEKDAEELERRAQETAVNLVK 1027

Query: 430  AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            A   LRL      +  Q K E + +L E  K+ +  +S  Q  N+   ++ E  +   + 
Sbjct: 1028 ADQQLRLLQADTKDLEQHKIEQEEILKEINKVVAAKDSDFQCLNKKKEKLTEELQKLQRD 1087

Query: 490  TDLGRRRTTFCEVSRADKATLQQAMIEK 517
             +   R          +  TL QA   +
Sbjct: 1088 IETAERTEDHHLQVLKESETLLQAKRTE 1115


>gi|156548408|ref|XP_001604465.1| PREDICTED: similar to SD07366p [Nasonia vitripennis]
          Length = 1535

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 137/412 (33%), Gaps = 43/412 (10%)

Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
           ++R  +  + +   +  D  D +        E     S  P++       +A        
Sbjct: 434 QSRQLKETQELRDSLQIDCEDMQTNIESLVMEVQHLKSNLPSIPEASEERVA-------S 486

Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIG---PDFPTGGIIVESRESIVESYRLGRGG 249
                E  +A +  +   +  +   L+ I      D   GG+ + +R   + + +     
Sbjct: 487 LETETESLQAEILALRKSKADMSSELKAIKAAIREDGGGGGVELATRIESLLAEQNKSKS 546

Query: 250 FRVRA---RWCVEEVGRGSWCIVVTEIPYQVQKSRL------IEKIAELI----IAKRIP 296
            +  A   +  ++E       I V E   +V   R       IE I EL      A+R  
Sbjct: 547 SKDPAELLQATLDENTALRRRIDVLESELRVSLERCKGLDENIELIEELKLDLENARREL 606

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            +    ++  E+   +L      +D D  +     LS  + +   ++ +LS G   +   
Sbjct: 607 KIALSNNKRLENSLTILQETKNEVDADNEV-----LSREKEQLEADLKLLSSGSDLK-KS 660

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-IRNEDKPKP 415
               L E     ++    +        + R E+ + L     N  EI  + + NE   K 
Sbjct: 661 DGDALAELREQLKKSKEEKDDLEYDIRNMRNELDQSLEQLEANRAEIEKLQLDNERLAKE 720

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL----DNLLAEKEKIDSL------L 465
                   +E Q +   NL    L   E   ++ EL    D L      +  +      L
Sbjct: 721 NGKLLDQFSETQKE---NLDKVDLLNTEMTLLQQELDGNKDELEKTMRYLSDMEEKILTL 777

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +  ++ N  A +I+E +  F K  +    R+        D A  + + +E+
Sbjct: 778 KNENERLNVEASKIKENEIEFLKLKEQLEERSLDHTKEELDAALKKLSELEE 829


>gi|67522158|ref|XP_659140.1| hypothetical protein AN1536.2 [Aspergillus nidulans FGSC A4]
 gi|40745087|gb|EAA64243.1| hypothetical protein AN1536.2 [Aspergillus nidulans FGSC A4]
 gi|259486861|tpe|CBF85064.1| TPA: b-zip transcription factor (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 627

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++  + R EI         NID +IA   NE++ K +   +  L   Q      L  R  
Sbjct: 221 IRKKNARFEIP--AERTLSNIDHLIAQSTNEEEIKELKQQKRLLRNRQA----ALDSRQR 274

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +KL   +++ E  +      +++  L + + +  ++  E  E      K ++ 
Sbjct: 275 KKLHTEKLEEEKKHFTQAINELEEELQNMRLREAELLREKEEWMATQQKISEY 327


>gi|50286399|ref|XP_445628.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524933|emb|CAG58539.1| unnamed protein product [Candida glabrata]
          Length = 692

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 7/208 (3%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K+   +    +E    L   +     N N        +       LK     + E     
Sbjct: 129 KDDFANKKTFLEESHKLKLEQLT--ANKNAELNKMNDEYRSKLEALKYEKIKKFENEKNE 186

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              +++ I  ++      L   +   E   +   E   K        +TE   ++I   +
Sbjct: 187 LIEKIEEIRNKMITNDVALQQRMKDIEADHLEEKEKWLKDYQKEWREVTEKNQESIRKTK 246

Query: 436 -----LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
                + ++           L+ L +E +K+D  L +  +Q  +I   I   +E   K  
Sbjct: 247 ELKSEIETVLTPRIDTQNKRLEELKSEIKKLDDTLQNKNEQVGEIRKNIDLEREKKDKLL 306

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKE 518
                   + E S+ +   +++ ++++E
Sbjct: 307 AEKEEILAYIEKSKKEVEEIKKILVKEE 334



 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 71/234 (30%), Gaps = 14/234 (5%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349
           + A +   ++   +E  E +  +   +N+ +  D+ ++      +               
Sbjct: 169 LEALKYEKIKKFENEKNELIEKIEEIRNKMITNDVALQQRMKDIEA------------DH 216

Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
              +   L    KEW     +        +    +    +   +      ++E+ + I+ 
Sbjct: 217 LEEKEKWLKDYQKEWREVTEKNQESIRKTKELKSEIETVLTPRIDTQNKRLEELKSEIKK 276

Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            D        +       +D     + + L   E+ +I + ++    E E+I  +L   +
Sbjct: 277 LDDTLQNKNEQVGEIRKNIDLEREKKDKLLA--EKEEILAYIEKSKKEVEEIKKILVKEE 334

Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523
                +  E++E++        +        +     K          + +T+ 
Sbjct: 335 SLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTIN 388


>gi|242011180|ref|XP_002426333.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
 gi|212510410|gb|EEB13595.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
          Length = 724

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 79/221 (35%), Gaps = 13/221 (5%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +  L+ KI  L        ++   + + + ++I+   K+   D   +++      D    
Sbjct: 345 RDDLLLKINRL--ESDYESVKSDCESTRDKLKILKIEKDALEDEMKILK--IKKEDDVEN 400

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           +   ++ L          L   +KE      ++        M+ I+   ++   L+    
Sbjct: 401 YEFKISALVKSSSSLEQTLAEKMKEIDEKDEKIKNLEMEV-MEKINTNTKLESKLIEINN 459

Query: 399 NIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
            ++    +    +   + +        +   Q+   + L  + LRK E      E + L 
Sbjct: 460 ELESGKKLYEEMNRKLEKEKGEKDDMMMRNAQISQKIELTKQKLRKQE-----LESNELN 514

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
           ++  +++  LN  ++  N +  E +E+   F K   + + R
Sbjct: 515 SKINELEEKLNDKEKLLNSVLNEKKELNANFIKLEKIHKDR 555


>gi|145253026|ref|XP_001398026.1| bZIP transcription factor [Aspergillus niger CBS 513.88]
 gi|134083584|emb|CAL00499.1| unnamed protein product [Aspergillus niger]
          Length = 636

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++  + R EI         NID++I+   NE++ K +   +  L   Q      L  R  
Sbjct: 223 IRKKNARFEIP--AERTLSNIDQLISQSTNEEEIKELKQQKRLLRNRQA----ALDSRQR 276

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +KL   +++ E          ++  L + + +  ++  E  E
Sbjct: 277 KKLHTEKLEEEKKQFTQVISDLEEELQNMRLREAELLREKSE 318


>gi|67624445|ref|XP_668505.1| stable maintenance of chromosomes; Smc4p [Cryptosporidium hominis
           TU502]
 gi|54659708|gb|EAL38274.1| stable maintenance of chromosomes; Smc4p [Cryptosporidium hominis]
          Length = 1316

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 14/222 (6%)

Query: 276 QVQKSRLIEKIAELIIAKR-IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM-LS 333
              +  L+E I ++I + R IP +E    E  +   +     NR    +  + ++    +
Sbjct: 186 NANEDGLLEYIEDIIGSSRFIPDIEKHLMELEQFNELRQEKLNRLKIAEKELNTLKGPYN 245

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWL----AHRREVLFRRSSFRMQAI--DRRV 387
                F L   +     +  +      ++          + +  R      +    DRR 
Sbjct: 246 MAIEFFTLEREIYIAKLLLHLEEQRDAMRHLNSLKDEQNKHLNIRGELAHQKKALEDRRA 305

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE--Y 445
           E+          ++E+   +  E            L + ++ A L    + L KLEE   
Sbjct: 306 ELEVENKETNSRVNELKVKLEKE----ENEFKNILLKDEELRATLKNSKKRLLKLEESAE 361

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             K  +  L  +   ++  +   ++Q  +I+ E+   +E   
Sbjct: 362 GEKKLIPELEQKIVDLEDEVRKKQKQLPKISKELDSAQEKLE 403


>gi|68492489|ref|XP_710003.1| hypothetical protein CaO19.564 [Candida albicans SC5314]
 gi|46431075|gb|EAK90726.1| hypothetical protein CaO19.564 [Candida albicans SC5314]
          Length = 485

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 25/205 (12%)

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +   L+   L   +   +        N   L        + +  +       +  + 
Sbjct: 78  IDLEQLKLNATTLRNELEKQTYENFTIQSNYQNLERILNDLNLKIGELNSYK---QSSLD 134

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------PVMVSRFSLT 424
               +F +     ++   + L     +I + +  I  E + K           +++    
Sbjct: 135 ALIKNFELNNHQLKMNHQEKLNNLKEDITKQVDKILTEKQHKYEVEISNLNKEINKIKSD 194

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQ 474
               ++ LN   R L +L+E Q K EL          +N+  E   I+SLL S  +Q   
Sbjct: 195 RKNTESDLN---RRLIQLKEDQHKQELMMVGRVNDDINNMKKEIADINSLLESKTKQIEL 251

Query: 475 IAC-EIREVKEIFSKSTDLGRRRTT 498
           I   EI        K T L  + T+
Sbjct: 252 IKSVEIEGASNKVDKFTLLLDQLTS 276


>gi|332237062|ref|XP_003267720.1| PREDICTED: ninein isoform 2 [Nomascus leucogenys]
          Length = 2046

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 103/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V      E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDKTVVSCEKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           + T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 MHT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 324 LLMESIF----MLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           L +E        L+  +  F      L  S+    +V  L   L+++  H+ ++      
Sbjct: 719 LRLEHEVELKARLTQAQASFEREREGLQSSVWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----------EDKPKPVMVSRFSLTEN 426
             ++ ++ R E+L+          E +    N            D  K       +L   
Sbjct: 777 HTLEKVELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESTLQSL 836

Query: 427 QVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +      L+ LR  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLREQQREEKSQWEFEKDELTQECAEAQELLKETLKREKATSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|311033487|sp|Q8N4C6|NIN_HUMAN RecName: Full=Ninein; Short=hNinein; AltName: Full=Glycogen
           synthase kinase 3 beta-interacting protein;
           Short=GSK3B-interacting protein
          Length = 2090

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|33946321|ref|NP_891991.1| ninein isoform 5 [Homo sapiens]
 gi|119586098|gb|EAW65694.1| ninein (GSK3B interacting protein), isoform CRA_c [Homo sapiens]
          Length = 2090

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|134299914|ref|YP_001113410.1| chromosome segregation protein SMC [Desulfotomaculum reducens MI-1]
 gi|134052614|gb|ABO50585.1| condensin subunit Smc [Desulfotomaculum reducens MI-1]
          Length = 1186

 Score = 40.9 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 9/221 (4%)

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL--FPKNRSL 320
           +    + + +I +QV + + IE+  +      +  L        E +R +        + 
Sbjct: 298 KNKQALTIEQINHQVSEYQRIEQYQKD-STVFLQQLNQELTVEKEKIRQIKESIELENTS 356

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380
           D   ++E I      +     N+N   + ++ +V     I +     R+E L  R     
Sbjct: 357 DSHQILEGIEQEVLQKQDLFQNLNTDLIEQLNRVANQRNI-QNQAMDRKEQLSHRREHIE 415

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           +      E+    +    NID     +   ++ K  +      +E +++ + +  +R   
Sbjct: 416 RVAQ---EVHDQGISLQSNIDAAQKRVEELNQKKLQLAEEQQKSEVKLEKLRDELMRVQS 472

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           KL    +K E+    +  + ++  LNS       +   +R 
Sbjct: 473 KL--LAVKEEMVAKHSRLKVLEENLNSHTGFIKPVRELLRA 511


>gi|253730227|ref|ZP_04864392.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253726036|gb|EES94765.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 664

 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHNKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|119586100|gb|EAW65696.1| ninein (GSK3B interacting protein), isoform CRA_e [Homo sapiens]
          Length = 2052

 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 564 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 623

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 624 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 680

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 681 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 738

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 739 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 798

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 799 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 858

Query: 486 FSKSTD 491
             K+  
Sbjct: 859 LEKTYK 864


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score = 40.9 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMNV-------LSMGRVPQ 353
           E   +  I   PK  ++D + +  ++     LS ++  +     +       + +  + +
Sbjct: 10  EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKK 69

Query: 354 VMPLDGILKEWLAHRREV--------LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +M   GI K + + R+++              F  Q            +     +++   
Sbjct: 70  IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSL-----RKLEEYQIKSELDNLLAEK 458
           I  ++ K K     R  L+E+Q+D  +N  + L  L      KLEE          +   
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESI 189

Query: 459 EKIDSLLNSGKQQWNQIA 476
             I+  L+S K  W +I 
Sbjct: 190 VDINKYLHSPKDAWKRIK 207


>gi|332237060|ref|XP_003267719.1| PREDICTED: ninein isoform 1 [Nomascus leucogenys]
          Length = 2133

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 103/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V      E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDKTVVSCEKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           + T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 MHT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 324 LLMESIF----MLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           L +E        L+  +  F      L  S+    +V  L   L+++  H+ ++      
Sbjct: 719 LRLEHEVELKARLTQAQASFEREREGLQSSVWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----------EDKPKPVMVSRFSLTEN 426
             ++ ++ R E+L+          E +    N            D  K       +L   
Sbjct: 777 HTLEKVELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESTLQSL 836

Query: 427 QVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +      L+ LR  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLREQQREEKSQWEFEKDELTQECAEAQELLKETLKREKATSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|327342912|dbj|BAK09288.1| DNA gyrase subunit A [Streptococcus constellatus subsp.
           constellatus]
          Length = 78

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKG- 59

Query: 697 ISDVICFKICE 707
            + ++ F   E
Sbjct: 60  -AQIVTFTSVE 69


>gi|253568270|ref|ZP_04845681.1| DNA gyrase [Bacteroides sp. 1_1_6]
 gi|251842343|gb|EES70423.1| DNA gyrase [Bacteroides sp. 1_1_6]
          Length = 113

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSY-KDGGISDVICFKICEGLTWID 713
              + + ++ ++   +   +  +  M R   GVRL +  K       +C  + E L    
Sbjct: 17  TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 76

Query: 714 SAGRSYNRSENDL 726
            A  +     +DL
Sbjct: 77  PAEEAEGTIVSDL 89


>gi|198419069|ref|XP_002125440.1| PREDICTED: similar to Smc3 protein, partial [Ciona intestinalis]
          Length = 1192

 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 80/238 (33%), Gaps = 12/238 (5%)

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
           ++   +I  +    D     +   +       +     E +   S+M+      +  L  
Sbjct: 138 IVKQGKINQMATAPDSYRLHLLREVAGTRVYDERKKESEVLMKESEMK---NAKIQELLT 194

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               ++  L    +E   +++    RR        ++ +   +G +    N  E  +   
Sbjct: 195 MIEDRLATLKDEKEELAQYQKWDKTRRG-LEYTIHNQELNETRGKIDLLSNKRENNSQQT 253

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID------ 462
              + +     R +    +     N R+R L + E+ Q  S+   L+ +K +++      
Sbjct: 254 KHLRAQQEEAQRRTKEFQKKLLTTNARIRQLTE-EKEQSASDRQELIKKKAQLELSSNDL 312

Query: 463 -SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
              L+S ++   Q   E+  ++E   K T+         E     +  L++ +   E 
Sbjct: 313 AEELDSDERSMGQARSELSGLREKILKKTEEKEEIIPRFEAVEGKEKELERRLKISEQ 370


>gi|254450035|ref|ZP_05063472.1| permease protein, haat family [Octadecabacter antarcticus 238]
 gi|198264441|gb|EDY88711.1| permease protein, haat family [Octadecabacter antarcticus 238]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L++ +  +    P   L   RG  +   +L DL+ +   +   +      L +    G 
Sbjct: 114 MLIIRSAVQVIWGP-NQLTFVRGIAKPNPVLSDLSGD---IGMMLIIPNKHLFIF--AGT 167

Query: 623 AFIV-EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV---------AVVGENRKLLI 672
             IV   S ++  TR GK    VS    +  V  +  D V                  L+
Sbjct: 168 VIIVIALSYLLNRTRIGKAMRAVSDSPDLAHVTGIDVDKVIRATWIVGGICATAAGVFLV 227

Query: 673 FSI 675
             +
Sbjct: 228 MDV 230


>gi|12655860|gb|AAK00628.1| ninein isotype 1 [Homo sapiens]
          Length = 2029

 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 585 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 644

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 645 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 701

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 702 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 759

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 760 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 819

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 820 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 879

Query: 486 FSKSTD 491
             K+  
Sbjct: 880 LEKTYK 885


>gi|283767629|ref|ZP_06340544.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           H19]
 gi|283461508|gb|EFC08592.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           H19]
          Length = 664

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       R  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYRPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V +V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGVVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|195169333|ref|XP_002025476.1| GL15217 [Drosophila persimilis]
 gi|194108955|gb|EDW30998.1| GL15217 [Drosophila persimilis]
          Length = 474

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/163 (11%), Positives = 50/163 (30%), Gaps = 9/163 (5%)

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
              L     P+ +P    +KE  A                + +  + ++    A  +  +
Sbjct: 159 CLALGDHPEPENIPQQQFIKELEA-----KIAMFEHTFALMKKHADQIQAERDALEHSQK 213

Query: 403 IIAIIRNEDKPKPVMVSRFSLTEN----QVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
               +      + +      L  +    +      ++L+   K E Y++    ++L+ E 
Sbjct: 214 SENHLSQRHDNENLKQECDQLMVDNWNLEAKGDAAMQLQREAKTEAYRLSRHCEDLINEL 273

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            K+     + ++    +     ++ +      D  R+     E
Sbjct: 274 SKLREQYANLERSMQIVKTIAEQLAKKLKTEKDSHRKELQDLE 316


>gi|145505639|ref|XP_001438786.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405958|emb|CAK71389.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1035

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 93/251 (37%), Gaps = 16/251 (6%)

Query: 275 YQVQKSRLIEKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDP--DLLMESIF 330
           YQ+  + L  +I +L    A+   LL + +D+  +  + +              L E++ 
Sbjct: 74  YQLNINALQHEIKQLKNQCAELKQLLLEQKDKYQQQQQNIETNLTEQYSKALKELQENLT 133

Query: 331 MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
           + +     +  +MN+L+  +  Q   +  +  E    +++    ++  +M     + ++ 
Sbjct: 134 LATSNCQIYRNSMNLLAQEKTTQEQQIKSLSNEIQKLKKQHDGEKNELQMIIARGKSQLS 193

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           +      + + ++      E + K    ++    ++Q+ A L  ++ S  K  +   +  
Sbjct: 194 ELEKAYTIRLHKVQQSNFEEYQTKLKNQAKDINEKDQMRAELEKKISSYEKFNQQLQQ-- 251

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
                      +++LN   +    I  ++ EV+     +  L        E   +D    
Sbjct: 252 ---------DYETILNQQTELQEIIKKQLGEVQVQSQLNYQLQDNSKQQ-ESIISDLKLS 301

Query: 511 QQAMIEKEPIT 521
             ++ ++  +T
Sbjct: 302 IASLKDEMQMT 312


>gi|115396636|ref|XP_001213957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193526|gb|EAU35226.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 642

 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++  + R EI         NID++I+   NE++ K +   +  L   Q      L  R  
Sbjct: 227 IRKKNARFEIP--AERTLSNIDQLISQSTNEEEIKELKQQKRLLRNRQA----ALDSRQR 280

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +KL   +++ E          ++  L + + +  ++  E  E
Sbjct: 281 KKLHTEKLEEEKKQFTQVISDLEEELQNMRLREAELLREKGE 322


>gi|313888427|ref|ZP_07822095.1| relaxase/mobilization nuclease domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845624|gb|EFR33017.1| relaxase/mobilization nuclease domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 456

 Score = 40.9 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 14/216 (6%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K ++ E+I   +            ++S +    ++  ++           I+       
Sbjct: 244 TKEKIKERIENKVNENYKNNKICYDEKSYKKFDNIIDIESNEKVKSSKGYEIWARKHNMN 303

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                +N L    +   M L+  L+E   +R+E+        +  I    +++  +  A 
Sbjct: 304 TMANTLNQLRKYGLSSSMDLETKLQEEAVNRQEI--------LNKIKDVEKVMSEIYAAI 355

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK----SELDN 453
             I+ I          K     +   +E +   I     +++  LE  Q K     EL  
Sbjct: 356 EGINTIKINKVIYKTYKENPNDKDFYSEYKPQIIA--YEKAINTLENCQYKNPSIKELSK 413

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           L  E +    +L       N +  E+ ++++   K 
Sbjct: 414 LYDEYKNKKDILMDDYANENILINELTQLRKNTDKY 449


>gi|322384401|ref|ZP_08058087.1| hypothetical protein PL1_0933 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150759|gb|EFX44219.1| hypothetical protein PL1_0933 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 682

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 40/212 (18%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +L+EK  EL+   R   ++                K R       M  +          
Sbjct: 157 EKLLEKREELMDKTRKKFIKLYEK-----------IKERHAYYKKRMNEL---------- 195

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL----KGLLI 395
               ++     +  V  L   ++           RR       ID R+E +    +    
Sbjct: 196 ---GSMADELGIHTVDSLKQEVQSVRD-----SIRRLQEEADKIDGRMESIRDAAETAKE 247

Query: 396 AYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            + ++D+    I  +  + +  + S   L E  V     +++     ++    + E   +
Sbjct: 248 EWEHLDKSKEQISKDLTEAQQKLSSFEHLFEVAVQYFAAIQI-----IKGEVKQDE-KQI 301

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
              +E++  +L   K+  +++  E+++VK+ +
Sbjct: 302 HELQEELQPILTDAKKANDELNGELQKVKDAY 333


>gi|20090134|ref|NP_616209.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19915115|gb|AAM04689.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1456

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 9/198 (4%)

Query: 322  PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            PD  +  +   ++  T +     + +        P           R+  +     + ++
Sbjct: 1112 PDGKITDVNKATEQITGYSRGELIGTDFTNYFTEPEKAKEGYQQVFRKGAVL---DYALE 1168

Query: 382  AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
               R   +   L  A +  DE   +I      + V   +      + + IL L+L  L +
Sbjct: 1169 IQHRNGSVTPVLYNASIYRDESGQVIGVFAAARDVTELK------KAEKILELKLEELAR 1222

Query: 442  LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
             +    +    +    +E +  + +  +    +   E+ E  + +      G  R     
Sbjct: 1223 SKADLEQFAYVSSHDLQEPLRMIASYLQLLQRRYQGELDERADKYIYFAVDGASRMQSLI 1282

Query: 502  VSRADKATLQQAMIEKEP 519
                + + +     E EP
Sbjct: 1283 NDLLEFSRVTTKAREFEP 1300


>gi|34786919|emb|CAE46960.1| A-kinase anchor protein 9 [Mus musculus]
          Length = 3779

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 419  SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
             R   TE     +L+  ++  + LE   ++ EL +L     ++   L+S K    ++  E
Sbjct: 2984 EREQGTEKSSQELLDCSMQQKQSLE---MQLELSSLRDRAAELQEQLSSEKMVVAELKSE 3040

Query: 479  IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            + + K     +     +R    E  R++       + 
Sbjct: 3041 LAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIH 3077


>gi|195442481|ref|XP_002068983.1| GK12316 [Drosophila willistoni]
 gi|194165068|gb|EDW79969.1| GK12316 [Drosophila willistoni]
          Length = 666

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 228 RRWIEKENKAARIKRKKEEMTRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAVQ 287

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    R + E  +  E  +  AE+++I+ +    +QQ   +  E + +++   
Sbjct: 288 AQ-----KAEQERAVREAAMAKERAD-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKVK 341

Query: 488 KSTDLGRRRTTFCEVSR 504
            S    +      +   
Sbjct: 342 DSKYYAKNEKDQLKHME 358


>gi|119586103|gb|EAW65699.1| ninein (GSK3B interacting protein), isoform CRA_h [Homo sapiens]
          Length = 2139

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 608 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 667

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 668 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 724

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 725 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 782

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 783 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 842

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 843 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 902

Query: 486 FSKSTD 491
             K+  
Sbjct: 903 LEKTYK 908


>gi|119586101|gb|EAW65697.1| ninein (GSK3B interacting protein), isoform CRA_f [Homo sapiens]
          Length = 1956

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 625 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 684

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 685 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 741

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 742 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 799

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 800 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 859

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 860 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 919

Query: 486 FSKSTD 491
             K+  
Sbjct: 920 LEKTYK 925


>gi|324499921|gb|ADY39978.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 2038

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 21/253 (8%)

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
               + +EK+AEL    +            E   I+   +    D D L + +  L    
Sbjct: 751 TSAQKEVEKLAELNNKLQ-----------KEKQDILNQKQKGESDVDALKDKLRKLEQEV 799

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +  L    L             +     AH  E     +   +  + +++  +      
Sbjct: 800 DKLRLENRTLHDSEQKANDAYKEM--ANKAHLLEKELEDAKNEIDELRKKLNRID----- 852

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKLEEYQIKSELDN 453
             N ++I   +  +  P      R   +  +   I  +R++ L    KL+  ++++E D 
Sbjct: 853 QENREKIELTLMTKAAPDEKSKEREITSTYESTHIHEIRVKELGDKYKLDLDKLENERDE 912

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L      ++  L   ++  ++   +I +++       D  +      +    +    ++ 
Sbjct: 913 LERRVHLLEDELTEKQRNVDRQEADIEDLRRKHQLEVDRLKAEMANLQTKYQNDLDDERD 972

Query: 514 MIEKEPITVVISN 526
               +   +  + 
Sbjct: 973 QNSHDIEVMKATE 985


>gi|148536871|ref|NP_891989.2| ninein isoform 1 [Homo sapiens]
          Length = 2046

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|119484618|ref|XP_001262088.1| bZIP transcription factor, putative [Neosartorya fischeri NRRL 181]
 gi|119410244|gb|EAW20191.1| bZIP transcription factor, putative [Neosartorya fischeri NRRL 181]
          Length = 643

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           ++  + R EI         NID++I    NE++ K +   +  L   Q      L  R  
Sbjct: 222 IRKKNARFEIP--AERTLSNIDQLINQSTNEEEIKELKQQKRLLRNRQA----ALDSRQR 275

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
           +KL   +++ E  +      +++  L + K +  ++  E  E
Sbjct: 276 KKLHTEKLEEEKKHFTQVISELEEALQNMKLREAELLREKSE 317


>gi|12655862|gb|AAK00629.1| ninein isotype 2 [Homo sapiens]
          Length = 2069

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 585 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 644

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 645 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 701

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 702 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 759

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 760 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 819

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 820 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 879

Query: 486 FSKSTD 491
             K+  
Sbjct: 880 LEKTYK 885


>gi|325511403|sp|Q0VG85|CC162_MOUSE RecName: Full=Coiled-coil domain-containing protein 162
          Length = 912

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 78/214 (36%), Gaps = 18/214 (8%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+ +  I +++++  +   ++ + L  K++      L    +    M+  F +  
Sbjct: 366 QQLQKLLESLEIHMIQEVLRKVNREMTLFLSEKSKEES--TLPTDRWKHQVMKENFSVMR 423

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEILK 391
             +    V ++M         +  RR            +V+ R  S           IL+
Sbjct: 424 PQIVERFVQRLMEDSQDDGPKITFRREHLEACILSLGCDVMARERSNFETYSMCYEHILQ 483

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR-LR-SLRKLEEYQIKS 449
                    ++ + ++R    P      + +  E   D I+ +  LR  L  LEE  +  
Sbjct: 484 HTRQKLSQKEQEVDLLRRSQVPSEDCAGQVA--ELSHDMIMEITALRAQLTDLEEENLNL 541

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           ++      +E+   L+ +      +I  ++ E +
Sbjct: 542 KIQIRKEVQEEYRELVQALFLTCLRIKEKLDENQ 575


>gi|255018820|ref|ZP_05290946.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-515]
          Length = 80

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 635 TRKG---KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRL 689
            R G   KT         +  +  VTG+  + ++  +  L+ F ID + +  R   GV+L
Sbjct: 1   NRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKL 60

Query: 690 QSYKDG 695
               + 
Sbjct: 61  IRLDED 66


>gi|148536869|ref|NP_065972.3| ninein isoform 2 [Homo sapiens]
          Length = 2133

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|119586102|gb|EAW65698.1| ninein (GSK3B interacting protein), isoform CRA_g [Homo sapiens]
          Length = 2077

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 546 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 605

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 606 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 662

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 663 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 720

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 721 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 780

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 781 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 840

Query: 486 FSKSTD 491
             K+  
Sbjct: 841 LEKTYK 846


>gi|321310997|ref|YP_004193326.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford
           1]
 gi|319802841|emb|CBY93487.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford
           1]
          Length = 364

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSL----------LNSGKQQWNQIACEIR-EVKEIFSK 488
           ++LE+     E+  +  E  K++ +          L +  +    I  E   E  ++   
Sbjct: 25  KRLEQETEGKEIIQINKEIAKLEKIAQGFIEYKKELENLDECLEIIKKESNPEFVKLAQS 84

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528
             + G+RR    E S          M EK  I  + S  G
Sbjct: 85  ELEAGKRRIPELENSLKRLLIPTDPMDEKNVIVEMRSAAG 124


>gi|291238090|ref|XP_002738957.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 558

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 99/314 (31%), Gaps = 15/314 (4%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + + +       + +   E         ++ E+  Q    +L E+I      +R+     
Sbjct: 208 KCHAIRDAQILEKGQVKEEMTDEEKRLDLMMEVDRQ-NALKLQEEIESQRKEERLAGKHV 266

Query: 301 IRDE-SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
           I  + +  +   +L  + +  +   +++ +  L   + +       L      Q+     
Sbjct: 267 ILTQIAEREEERLLDQEKKDQEAHQMLKYLEKLQIEDLK------ALERKHEQQLESQKE 320

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDR-RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
           I++  +   +    R+   +++          K    A    ++    I  E +   +  
Sbjct: 321 IMRANIESEKTREVRKEQQKLEEQKVVEYMKQKAEREAAFEAEQERKRIEKEKEVARLRA 380

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +    + Q +  +    R+  +LE    K E +    +K + + +L    ++   +  E
Sbjct: 381 MQERAKDYQAEKDMLRAKRNQEQLEREWRKKEREE-AMKKAETEKMLKD-AREIQVMNKE 438

Query: 479 ----IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
               ++  +E       L  +R         ++    + +   + +   I  +  ++   
Sbjct: 439 HFLAVQAARERAEFERVLQAQREEMDAEKAKEEHFRYRKLAHADDVRKQIREKEQLKIAD 498

Query: 535 SHSVDLSALHFKEG 548
             S     +   E 
Sbjct: 499 RDSFFEEGIKLDEE 512


>gi|196001381|ref|XP_002110558.1| hypothetical protein TRIADDRAFT_22183 [Trichoplax adhaerens]
 gi|190586509|gb|EDV26562.1| hypothetical protein TRIADDRAFT_22183 [Trichoplax adhaerens]
          Length = 962

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 94/257 (36%), Gaps = 28/257 (10%)

Query: 259 EEVGRGSWCIVVTEIP-YQVQKSRLIEKIAEL-IIAKRIPLLEDIRDESAEDVRIVLFPK 316
           ++       +V  ++  Y     +L   IA+L    +++ L E+      ++++  L  K
Sbjct: 662 KQRDSEREILVRKKVDEYTKLTDKLKTSIADLEKRERQLTLGENELSRLRDEIQRELQLK 721

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV----L 372
              ++      S     D E R  L    +      +      + +    +R        
Sbjct: 722 LNEMNE----ASRRFQEDCEHRVTLERAKVLDLEEQKQKLFADLKEAENRYRERESDFDK 777

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------VSRFS 422
           ++           R +I    L       ++ A I+++   K               R  
Sbjct: 778 YKNQQNSKPEAQLRADINMLTLEKVELQRKLDATIKSKQHYKEQWSEALKELARLRERER 837

Query: 423 LTEN-----QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ---QWNQ 474
           + E      Q   + +LRLR L + E+  +K++ + L   KE+I SL  S +Q   +  +
Sbjct: 838 VNEKTRLQKQARELEHLRLRYLAQEEKGVMKNDKNELETLKEEIKSLATSIRQTGHKTQE 897

Query: 475 IACEIREVKEIFSKSTD 491
           ++ E++E ++  + + +
Sbjct: 898 LSTELKEKQKKQAIAAE 914


>gi|145502347|ref|XP_001437152.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404300|emb|CAK69755.1| unnamed protein product [Paramecium tetraurelia]
          Length = 909

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 101/286 (35%), Gaps = 26/286 (9%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL---DPDLLMESIFMLSDM 335
              + ++I +L   KR  L++ + +++     I+     + L     +  ME     +  
Sbjct: 247 NKDVQKQIDDLRSIKREDLVKQVTEQA-----IIFESLEKDLLSLTSENYMEFREKYTKN 301

Query: 336 ETRFPLNMNVLSMGRVPQ--VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
           +     N   +    + +  +    G+    +     V     +  +Q    + +I + L
Sbjct: 302 KDNEAQNQVAVQKQIIQKTELHQPSGVNTIEIQQPIIVNDDSKAQYLQLEQEKQQIQEKL 361

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             A    +E           K      F   ++Q D  L ++     ++E  +   E  N
Sbjct: 362 SNAQKEFNEY----------KINSQKVFQQLKDQYD--LEIK---SNEIERQKQYQEKQN 406

Query: 454 LLAEKEKIDSLLNS-GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           L+ + EK+ + LN+  +QQ N +  +++   E   +  +L              KAT  +
Sbjct: 407 LMNQIEKLKAQLNNGIEQQNNLMIGQLKRDIENLKQEKELKIFNFQQEINQYQQKATEFE 466

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
            + +   + + + N   ++    + +       ++ +  K  L + 
Sbjct: 467 TIQQNLTLQLNLYNSQILKMQNEYQILKENQQKEKQEFQKQILESR 512


>gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
 gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
          Length = 489

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 72/172 (41%), Gaps = 24/172 (13%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-------------IRNEDKPK 414
           R E   +R  FR+Q I+ R E ++ L       +++                I +++  K
Sbjct: 318 RIERTKKRQEFRLQKINERKEKIELLKQQQQLEEQLKEQDKQEEEEERDENDIISKENAK 377

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW-- 472
           P    +  LT+ ++D + +L++     +++   + ++ +L   +E+++ LL+  ++    
Sbjct: 378 PPKEKKPRLTQEEID-LEDLQIEEE--IDKDIKQKDIRDLDNYQEQLEELLHKKEKNESS 434

Query: 473 NQIACEIREVKEIF------SKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            Q+  E  ++ + +       K+ +    +    +    D+    +  + ++
Sbjct: 435 KQMKKEHLDIIDQYGNVVLHGKNKEFNDTKNIKEDFDNIDEDEDYENFLNEQ 486


>gi|171319211|ref|ZP_02908329.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           ambifaria MEX-5]
 gi|171095591|gb|EDT40553.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Burkholderia
           ambifaria MEX-5]
          Length = 684

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENR--KLLIFSI 675
            GN F      +  + R G  F+   S + + +  +     D   V   +   +++ F +
Sbjct: 237 SGNRFFNTLGNLQHDPRAGLLFIDFDSGDVLYVAARAEIVWDGPLVASFDGAQRVVRFHV 296

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 297 REVR---RTRGV 305


>gi|115360161|ref|YP_777299.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding
           [Burkholderia ambifaria AMMD]
 gi|115285449|gb|ABI90965.1| pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein
           [Burkholderia ambifaria AMMD]
          Length = 684

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENR--KLLIFSI 675
            GN F      +  + R G  F+   S + + +  +     D   V   +   +++ F +
Sbjct: 237 SGNRFFNTLGNLQHDPRAGLLFIDFDSGDVLYVAARAEIVWDGPLVASFDGAQRVVRFHV 296

Query: 676 DQIPEMSRGKGV 687
            ++    R +GV
Sbjct: 297 REVR---RTRGV 305


>gi|119586097|gb|EAW65693.1| ninein (GSK3B interacting protein), isoform CRA_b [Homo sapiens]
          Length = 2095

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 564 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 623

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 624 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 680

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 681 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 738

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 739 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 798

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 799 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 858

Query: 486 FSKSTD 491
             K+  
Sbjct: 859 LEKTYK 864


>gi|207346951|gb|EDZ73288.1| YDL058Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1153

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|332842208|ref|XP_003314366.1| PREDICTED: ninein isoform 2 [Pan troglodytes]
          Length = 2046

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LKKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|301606150|ref|XP_002932702.1| PREDICTED: janus kinase and microtubule-interacting protein 3-like
           [Xenopus (Silurana) tropicalis]
          Length = 1008

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 83/235 (35%), Gaps = 17/235 (7%)

Query: 284 EKIAELIIAKRIP-----LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +K+A+L    ++       ++ IR+       +++      L  + + E   +   +  +
Sbjct: 440 KKMAKLPKVSKLEREKNQEIKQIREHEQHKNIVLITELKAKLHEEKMKELQAVREALLRQ 499

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLA----------HRREVLFRRSSFRMQAIDRRVE 388
               +  +   +      L  I+                       +  F  + I  + E
Sbjct: 500 HESELFRVIKIKDNDNQRLQAIVNALRDGAPEKVKTVLFSEAKEEAKKVFDFEKIKMQQE 559

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVM-VSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           I + L  A   ++E + ++   DK K     S + L + ++  I     R +R+LE+   
Sbjct: 560 IFE-LKGAKRQMEEALTVVMQADKMKAAEIRSIYHLHQEEISKIKRECEREIRRLEQQLD 618

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           + +      +  ++ S++   + +   ++ E  E+ +  +K     R R    E 
Sbjct: 619 EKDARRFQLKIAELSSIIRKLEDRNALLSEERNELFQGMAKEETELRFRQLTMEY 673


>gi|289807753|ref|ZP_06538382.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 42

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 20/42 (47%)

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
           + E D L  E++++  +L S ++    +  E++   + +   
Sbjct: 1   RGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD 42


>gi|10956506|ref|NP_053788.1| Mob protein [Bacillus subtilis]
 gi|1049126|gb|AAC44420.1| Mob protein [Bacillus subtilis]
          Length = 482

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 87/285 (30%), Gaps = 37/285 (12%)

Query: 230 GIIVESRESIVESYRLGRGGFR-VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G   E +   V  Y++ +      R    +    +    +       Q       E +  
Sbjct: 178 GEPSEKKHENVHQYKINQRQAELERLNAEIALKEKQREELEKQNKAVQAVIEVKKESLTA 237

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
            +   ++P +E  +             K++ + P+  +  ++  ++ +T+         +
Sbjct: 238 KVEELKMPTIEHEKA---------WLKKDKVIVPERELHDLYAYAEQKTK-----TASEL 283

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               ++   +    + +A +          R+Q +  R+              E      
Sbjct: 284 AGQLKLETQEKECWQSIARQEADRADEKDRRLQELQSRIHSEV----------EASKKEM 333

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
                K         TE Q +      LR   K E   +++E   L AE + +    NS 
Sbjct: 334 RRKLAKE-------FTEEQRE-----DLRQEVKEELTALRTENKELSAENKVLIIQRNSE 381

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
             +   +  E+ +  E +++     +++    E    +   L+  
Sbjct: 382 AAESLNLKQELDKKNEKYAELFSFAKKQNQTLEKVTGENQVLKTE 426


>gi|332842206|ref|XP_003314365.1| PREDICTED: ninein isoform 1 [Pan troglodytes]
          Length = 2133

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LKKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|168023023|ref|XP_001764038.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684777|gb|EDQ71177.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1266

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 103/295 (34%), Gaps = 45/295 (15%)

Query: 254 ARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            R  +E +G+    CI ++         +L+++I++ +  +R+    +  D S+    +V
Sbjct: 267 GRVKLEVMGKKVKTCISIS----GTDPQKLLKEISK-VEGRRVVKSTNCNDRSSRSHCMV 321

Query: 313 ----------LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                     L   + +   ++    +     M+T      N      V  +   D  + 
Sbjct: 322 TLDVPEVGGKLVLVDMAGSENVEQAGLGRELKMQTGKINQGNGALKRVVEAIANGDSYI- 380

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
               +R   L        +  D R +IL  L  +    D    I   E   K   + R S
Sbjct: 381 ---PYRDSKLTMLLQDSFE--DDRAKILMILCASPDIRDLHKTICTLEYGAKAKCIVRLS 435

Query: 423 LTE----------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +            QV  IL      L K + Y     ++NL  +KE+ +  L S  ++ 
Sbjct: 436 NSPSKSRISAAGVEQVQ-ILE---ARLTKKDAY-----IENLRKQKEEREKELESKDKEL 486

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                E+RE  + ++   +  R+R    +    D  +      + E +T ++  +
Sbjct: 487 ----AELREEAKRWNSEKEPQRKRKGLHDGDTEDLNSSPTRKQKIEELTALVLQQ 537


>gi|77406476|ref|ZP_00783531.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174911|gb|EAO77725.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 30

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKER 41
          + ++N+  V+L   ++  ++ YA+S I  R
Sbjct: 1  MQDKNLVDVNLTSEMKTSFIDYAMSVIVAR 30


>gi|324499742|gb|ADY39897.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1887

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 21/253 (8%)

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
               + +EK+AEL    +            E   I+   +    D D L + +  L    
Sbjct: 600 TSAQKEVEKLAELNNKLQ-----------KEKQDILNQKQKGESDVDALKDKLRKLEQEV 648

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +  L    L             +     AH  E     +   +  + +++  +      
Sbjct: 649 DKLRLENRTLHDSEQKANDAYKEM--ANKAHLLEKELEDAKNEIDELRKKLNRID----- 701

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKLEEYQIKSELDN 453
             N ++I   +  +  P      R   +  +   I  +R++ L    KL+  ++++E D 
Sbjct: 702 QENREKIELTLMTKAAPDEKSKEREITSTYESTHIHEIRVKELGDKYKLDLDKLENERDE 761

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L      ++  L   ++  ++   +I +++       D  +      +    +    ++ 
Sbjct: 762 LERRVHLLEDELTEKQRNVDRQEADIEDLRRKHQLEVDRLKAEMANLQTKYQNDLDDERD 821

Query: 514 MIEKEPITVVISN 526
               +   +  + 
Sbjct: 822 QNSHDIEVMKATE 834


>gi|293356911|ref|XP_001064427.2| PREDICTED: coiled-coil domain containing 162 [Rattus norvegicus]
          Length = 911

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 16/214 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           ++++ +L+ +  I +++++  +   ++ + L  K++      L   ++    M   F + 
Sbjct: 366 LQQLQKLLESLEIHMIQEVLRKINREMTLFLSEKSKEES--TLPTDLWKHPVMRENFSVV 423

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEIL 390
              +    V ++M         +  +R            +V+ R  S           +L
Sbjct: 424 RPQIVERFVQRLMENSQDNGPEITFQREHLEACLLSLGCDVMARERSNFETYSMCYEHVL 483

Query: 391 KGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           +         ++ + ++R    P +        L+ + +  I  LR   L  LEE  +  
Sbjct: 484 QHTRQKLSQKEQEVDLLRRSQAPPEDRAGQIAELSHDIIMEITALR-ARLADLEEENLNL 542

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           E+      +E+   L+ +       I  ++ E +
Sbjct: 543 EIQIRKEVQEEYRELVQALFMTCLHIKEKLDENQ 576


>gi|293345064|ref|XP_002725932.1| PREDICTED: 5033413D22Rik protein-like [Rattus norvegicus]
          Length = 1079

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 77/214 (35%), Gaps = 16/214 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           ++++ +L+ +  I +++++  +   ++ + L  K++      L   ++    M   F + 
Sbjct: 534 LQQLQKLLESLEIHMIQEVLRKINREMTLFLSEKSKEES--TLPTDLWKHPVMRENFSVV 591

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEIL 390
              +    V ++M         +  +R            +V+ R  S           +L
Sbjct: 592 RPQIVERFVQRLMENSQDNGPEITFQREHLEACLLSLGCDVMARERSNFETYSMCYEHVL 651

Query: 391 KGLLIAYLNIDEIIAIIRNEDKP-KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
           +         ++ + ++R    P +        L+ + +  I  LR   L  LEE  +  
Sbjct: 652 QHTRQKLSQKEQEVDLLRRSQAPPEDRAGQIAELSHDIIMEITALR-ARLADLEEENLNL 710

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           E+      +E+   L+ +       I  ++ E +
Sbjct: 711 EIQIRKEVQEEYRELVQALFMTCLHIKEKLDENQ 744


>gi|47214667|emb|CAG00903.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1558

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 81/222 (36%), Gaps = 26/222 (11%)

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367
            VR  +    RS++ + L   +  L+    +  +               ++ +++     
Sbjct: 678 RVRDEMAEAQRSVETEELQSLVASLTAERDQLKM----------DLQENVEMMIENQGEL 727

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE--IIAIIRNEDKPKPVMVSRFSLTE 425
           R  +   +    +       E       +  +  E  +  I    ++ + V   R  L E
Sbjct: 728 RSALQRNQEQKELIK-QLEKEQTSAQDGSPPDNHEQLLTQIKVLSEELESVKAERNRLRE 786

Query: 426 NQVDAI-----LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +   A+     L  RL SL + E+ ++      L  EKE++  ++N  +Q+  Q+  E+ 
Sbjct: 787 SDALALGDKHELQRRLISLTE-EKEELGGRFSTLDREKEELQEIINVLRQEKQQLQAELE 845

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           +  E+  +         T  + +  ++  L++ +     +T+
Sbjct: 846 DQMELIEQLQ-------TSLQAASDERIRLEEDLQHNREMTI 880


>gi|21930287|gb|AAG33512.2|AF302773_1 ninein-Lm isoform [Homo sapiens]
          Length = 2090

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTTQIEAQFQSDCQKVTERCESALQSL 836

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|183396763|dbj|BAG28286.1| KINID1b [Physcomitrella patens subsp. patens]
          Length = 1197

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 103/295 (34%), Gaps = 45/295 (15%)

Query: 254 ARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
            R  +E +G+    CI ++         +L+++I++ +  +R+    +  D S+    +V
Sbjct: 208 GRVKLEVMGKKVKTCISIS----GTDPQKLLKEISK-VEGRRVVKSTNCNDRSSRSHCMV 262

Query: 313 ----------LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                     L   + +   ++    +     M+T      N      V  +   D  + 
Sbjct: 263 TLDVPEVGGKLVLVDMAGSENVEQAGLGRELKMQTGKINQGNGALKRVVEAIANGDSYI- 321

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
               +R   L        +  D R +IL  L  +    D    I   E   K   + R S
Sbjct: 322 ---PYRDSKLTMLLQDSFE--DDRAKILMILCASPDIRDLHKTICTLEYGAKAKCIVRLS 376

Query: 423 LTE----------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +            QV  IL      L K + Y     ++NL  +KE+ +  L S  ++ 
Sbjct: 377 NSPSKSRISAAGVEQVQ-ILE---ARLTKKDAY-----IENLRKQKEEREKELESKDKEL 427

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
                E+RE  + ++   +  R+R    +    D  +      + E +T ++  +
Sbjct: 428 ----AELREEAKRWNSEKEPQRKRKGLHDGDTEDLNSSPTRKQKIEELTALVLQQ 478


>gi|145503655|ref|XP_001437802.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404958|emb|CAK70405.1| unnamed protein product [Paramecium tetraurelia]
          Length = 744

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 8/150 (5%)

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDE 402
           V+     P +  L     +    R  +  +       +    + +   K   + Y  ++E
Sbjct: 71  VIETLITPFLKLLKEFQSDLEQFRIAISNQIDQVLSIVNQWQQDLHNEKQKQVDYKFLEE 130

Query: 403 IIAIIRNEDKPKP----VMVSRFSLTENQVDAILNL--RLRSLRKLEEYQIKSELDNLLA 456
           +  I++ E   +         R  + E Q   I+ +  +L  L K E+     E   L+ 
Sbjct: 131 LEYIVQKEITQQSSQYFEDKIRNQIKELQSKWIVQVESKLSQLSKFEQLNSCQEKLKLID 190

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           ++ KI  +    + +   I  +  E+   +
Sbjct: 191 KQRKIQIIKLKKELELPLIKLDSTEIGVQY 220


>gi|119586104|gb|EAW65700.1| ninein (GSK3B interacting protein), isoform CRA_i [Homo sapiens]
          Length = 1868

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 380 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 439

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 440 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 496

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 497 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 554

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 555 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 614

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 615 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 674

Query: 486 FSKSTD 491
             K+  
Sbjct: 675 LEKTYK 680


>gi|159111351|ref|XP_001705907.1| Hypothetical protein GL50803_14971 [Giardia lamblia ATCC 50803]
 gi|157433998|gb|EDO78233.1| hypothetical protein GL50803_14971 [Giardia lamblia ATCC 50803]
          Length = 696

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 74/549 (13%), Positives = 156/549 (28%), Gaps = 58/549 (10%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A       ++ D  D    +   I  A++E       +F+    ++      +     Q+
Sbjct: 24  ATYDHIMSSLQDHVDSLTTLSANITQAVAEDPTIPMDSFETEIALIETKFQAVQRAVTQA 83

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVD 153
           +  + +   +     Y  +       +I    A   +             L   D +   
Sbjct: 84  LGGNSMNTDELCTLNYKYMECNKKLKDIRKFIAEHEKEGLLTTDNDDLKDLSPEDLNTGG 143

Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213
              T               PN LA   +G + G A  IP      I +   +     + S
Sbjct: 144 PEPTKPYRQVHISAAAP-VPNFLAPPATGHSGGGALVIPPQTSPSIAK-LQSAASINKGS 201

Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA-------RWCVEEVGRGSW 266
              LL      D   G  ++   +    S R       +R        +   EE+ RG  
Sbjct: 202 YNSLLAVSNIGD--KGANVLLPSDGTELSMRTSSPSGVLRKSSNPEQYKKHAEELNRGIN 259

Query: 267 CI---------------VVTEIPYQVQKSRLIEKIAELIIAKRIP---------LLEDIR 302
            +                +TE    V         A L    + P         +  ++R
Sbjct: 260 KLRSNLIALNRAANEPETITEALTGVNLQD-----ARLARDNKKPVSGSESVAQITANLR 314

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
            E+      +   K R+   +  + S+      +T+              +      IL+
Sbjct: 315 RENISLKEELTTLKTRTKQQEDEIASLKKALSTQTKLS-----------EKQSDDIDILQ 363

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             L    E     S+   + +    ++ K L        E+  ++  E   + V +S   
Sbjct: 364 ASLDRVTEERQSLSATLKEKMRALGDLRKQLDTISDQNKELTELLEVERNDRNVAISELR 423

Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
                  A  +     L+ L+E  ++  +  L      I+ +    +    Q+  +  ++
Sbjct: 424 AELGHYKAENDTLKSRLKTLDELNVEGNVLELERVTADIEDM----QTMVKQLKKQKADM 479

Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---KSHSVD 539
              F++  +L +      E   A      +         V++      R +   +  ++ 
Sbjct: 480 ANRFAREKELLQENIDVLEAQLASGYLESEKGAPSHAEIVMLEQEVVKRDIEIKRLRNLV 539

Query: 540 LSALHFKEG 548
             A+  K+ 
Sbjct: 540 AKAMSDKDE 548


>gi|313221287|emb|CBY32044.1| unnamed protein product [Oikopleura dioica]
          Length = 306

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 68/175 (38%), Gaps = 9/175 (5%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA---ID 384
           ++   +  +   P N+N   +        +D  ++  L    + +  R+  +++      
Sbjct: 14  NLTNTTPADFNQPPNVNAQGLSEAAINQLIDQKMQSVLNALGKSMTERAQMQLEIDALKT 73

Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
              E+   +    LN +++I  +   +     +    +  E         +++ L+K E 
Sbjct: 74  SEQELKNQVENVILNNEQLIERVEKVEIENAQLKQMLNEMEISG------QIKRLKKTER 127

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + K+E   +  + E+++  L +  ++ +++    +E+ EI       G  + T+
Sbjct: 128 EEWKNETRKIEEKVEELELNLRNESEKRHELEMLRKEMGEIGGAGHFFGNDKDTY 182


>gi|123343336|ref|XP_001294747.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121873005|gb|EAX81817.1| hypothetical protein TVAG_579680 [Trichomonas vaginalis G3]
          Length = 723

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 24/253 (9%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
               L + IAE      +  +  + D+SA  ++  +    +S+D           ++ + 
Sbjct: 207 NNEDLEKTIAE--KQSMLNSIPAVEDKSA-ALKQTIDNLQKSIDAKQAKNDEITKNNNDL 263

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAH------RREVLFRRSSFRMQAIDRRVEILK 391
              +N     + ++P+V      LK  LA         +    + +   + I R +E  +
Sbjct: 264 ENQVNNKQSELEQIPEVEDKTEELKNRLAQLDNSINEVKAENEKKNVNNEKIKRDIEAKE 323

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
             L      +E I    N D     + SR     +Q+         SL K +   ++++ 
Sbjct: 324 KELKQLK--EEFINDTINADNEASELSSRLQDLRDQI---------SLTKSQIDDLQNDH 372

Query: 452 DN----LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
                 L  +  +++  LN  +Q   ++   + E+ +  S  ++L        E +    
Sbjct: 373 QEKTDALKNDIAELEDELNGNQQYLEEVRKVLDELHDKLSDPSNLDIVTQLAQEATEKLD 432

Query: 508 ATLQQAMIEKEPI 520
                    +E +
Sbjct: 433 EIAVANADNQEVV 445


>gi|172037107|ref|YP_001803608.1| HlyD family secretion protein [Cyanothece sp. ATCC 51142]
 gi|171698561|gb|ACB51542.1| putative HlyD-family secretion protein [Cyanothece sp. ATCC 51142]
          Length = 553

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 19/176 (10%)

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI--IAIIRNEDKPKPVMVSRFSLTENQVDAI 431
           RR    ++   + ++  + +L     + E   IA+I+ + + + V   R  L++ + +A 
Sbjct: 247 RRDQSGLKNTQQSLQTEEQILNRIEPLKEEGAIALIQYDKQLQAVNELRAELSQREAEAS 306

Query: 432 LNLRLRSL----RKLEEYQIKSELD----NLLAEKEKIDSLLNS-GKQQWNQIACEIREV 482
           L++  +       + +  ++  E       L   ++K+++++         QIA   + +
Sbjct: 307 LDMNQQRQTIQSTQADIDRLIQEQKRLQLELSQSQQKLNNIMADGETNLRGQIAANEQRL 366

Query: 483 KEIFSKSTDL-----GRRRTTFCEVSRADKATLQQAMIEKEPITVV---ISNRGWI 530
            EI+S+ T        R      E+S+       Q +       V     S  G++
Sbjct: 367 AEIYSQLTKRIVENKKRLSQIESELSQTKLNLTYQNLKADTSGVVFDLKASQPGFV 422


>gi|332361470|gb|EGJ39274.1| surface protein D [Streptococcus sanguinis SK1056]
          Length = 1396

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 89/300 (29%), Gaps = 16/300 (5%)

Query: 240 VESYRLGRGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
            +SY       + + +  +E   +        + E  YQ   +   E++AE+    +   
Sbjct: 371 KQSYETALAKIQEQNK-EIEAQNLAVQKKNAALKEQ-YQADLAAYQERLAEIRQKNQAAE 428

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML----SDMETRFPLNMNVLSMGRVPQ 353
            +     +A                     ++         +++            +   
Sbjct: 429 KDYESKLAAYQKNRSEIEAANDAKARDHQAALTAYQSELERVQSENKKRQTAYETEKAEI 488

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID--EIIAIIRNED 411
               D I  E    R++   ++  ++ Q      +I +       + +  E   +   E 
Sbjct: 489 TARNDAIQAENAQIRQQNQEKQELYKNQLAQYEQDIARITESNQKSREAYEKALLTYQEA 548

Query: 412 KPKPVMVSRFSLTENQVD-AILNLRLRSLRKLEEYQIKSELD----NLLAEKEKIDSLLN 466
             +    ++  L   Q D A     L  +   E  ++K + D     + A+   I+    
Sbjct: 549 TARIETENKNKLAAYQADLATYQANLARIEA-ENQRLKEDYDANLAAISAQNAVIEQENA 607

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           S K +  ++  +  ++ E + K+        T  + +        Q    K+     +S 
Sbjct: 608 SIKGKNARLKADFDKLLEEYKKAKAAYDTAKTKYDAALVTFERELQEAEAKKNEEGYLSK 667


>gi|332222098|ref|XP_003260201.1| PREDICTED: formin-binding protein 1-like [Nomascus leucogenys]
          Length = 687

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 95  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 146

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 147 CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 198

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 199 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 235


>gi|311263397|ref|XP_003129667.1| PREDICTED: nuclear mitotic apparatus protein 1-like [Sus scrofa]
          Length = 2108

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 90/318 (28%), Gaps = 22/318 (6%)

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           N   +G+    +G     P   ++ + +      +N +    +L E           I V
Sbjct: 193 NNFLSGSPASPMGDILQTPQFQMRRLKKQLADERNNRDELELELAENRKLLTEKDAQIAV 252

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK 293
             +     +    +          +EE+   +  + +            +++  +L   +
Sbjct: 253 MQQRIDRLALLNEKQAASPLEAGELEELRGKNESLTIR-------LHETLKQCQDL-KTE 304

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           +  +   I   S E+  +    +  +     L  ++  L+D  ++              +
Sbjct: 305 KGQMDRKINQLSEENGDLSFKLREFASHLQQLQGALNDLTDEHSKASREWVEKQAQLEKE 364

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +       K        +  + S         R    +       +I      ++ E   
Sbjct: 365 LGAALQDKKCLEEKNEILQGKLSQLEEHLAQLRENPPREKGEVLGDI------LQLETLK 418

Query: 414 KPVMVSRFSLTENQV--DAILNLRLRSLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGK 469
           +         T+ Q   +A+   R +   KL  E    + E   L     ++   L+S  
Sbjct: 419 QEAATLAADNTQLQARVEALETERSQREAKLLAERSHFEEEKQQLAGLIAELQGSLSSLS 478

Query: 470 QQWNQIACEIREVKEIFS 487
           +       E+ E  +   
Sbjct: 479 RA----KEELEEASQAQG 492


>gi|229113108|ref|ZP_04242605.1| hypothetical protein bcere0018_53190 [Bacillus cereus Rock1-15]
 gi|228670373|gb|EEL25719.1| hypothetical protein bcere0018_53190 [Bacillus cereus Rock1-15]
          Length = 644

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 102/287 (35%), Gaps = 31/287 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF---PKNRSLDPDLLMESIFM 331
           YQ +    ++ I E     ++  L +  ++  ++++  L     K R       ++    
Sbjct: 358 YQKEAEERLQDIFEQGFQTKLAQLNEFENKEVQEMQKKLTAFTEKQRLDLESFKLKQEAE 417

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           L+  ++      N L   R       +  L++     +        + ++   +   I K
Sbjct: 418 LTAYQSELEGRKNTLVSAR-------EEELQKESEIEKRKATTEKVYELKIAGKNELIDK 470

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVS----------RFSLTENQVDAILNLRLRSLRK 441
                  +I+    I+ + ++ + V  +               E Q +    ++ R L K
Sbjct: 471 KNEYLSDSIEMTEQIMNDANEQQEVRFAVLEDKMKQLIPEWKEEIQAEHDKEMKERQL-K 529

Query: 442 LEEYQIKSELD--NLLAEKEKIDSLLNS--GKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
           +EE + + E++  NL   KE+   + ++   ++  N I     ++ +  +      +++ 
Sbjct: 530 IEEEKNRIEIEALNLQQRKEEAKEVRSNDREQKLLNIIEDLKEKLLKAHANPEQQPQQQP 589

Query: 498 TFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
                    +     +  +QQ  ++++P+    + +  +   K  + 
Sbjct: 590 VIMYQQPVQQPIVMYQQPVQQTTMQQQPVQEPATQQKTVSKKKRRTF 636


>gi|145514708|ref|XP_001443259.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410637|emb|CAK75862.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3228

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
               L+  +  ++      ++    ++  + + +    +        + E        +  
Sbjct: 2624 CKTLLSNMGGIVKNFSNIIISLCNNQENQLLIVQYIKEYIEKTIREINEQFKRQQQYDEI 2683

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            F  +  ++++ +  + +   G              +      Q +    E+++       
Sbjct: 2684 FNGDKALINVFQFVKEINAKGN--------EGNNQQDVRLNFQELLDNKELIELWKNMIT 2735

Query: 399  NIDEIIAIIRNEDKPKPVMVSRFSLTENQ-VDAILNLRLRSLRKLEEYQIKSELDNLLA- 456
             + +I      +  PK            Q V+ I  +RL      +   ++ + + +   
Sbjct: 2736 FLQQIPQQQIIKLTPKISPYLECFFIIYQIVNPIKKIRLNQKESKKIAMMEEQYEEIKEQ 2795

Query: 457  EKEK--IDSLLNSGKQQWNQIACEI-REVKEI 485
            E        +  SGK   N +  E  +E KE 
Sbjct: 2796 EIHDELFQKICESGKALLNIMLKERFQEYKEK 2827


>gi|83318125|ref|XP_731459.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491511|gb|EAA23027.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 249

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               + ++ D  ++ + +G     P  +L   + +       I+L  +  ++    Y++ 
Sbjct: 26  IFFNYCNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLG-NKCINLKKDDKVIDLVSYENN 84

Query: 612 C------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  K++ +S  G+  ++   EI    ++GK F
Sbjct: 85  LENLKNIKIIFLSKNGHGKMIGLDEIKVQKKRGKGF 120


>gi|328776905|ref|XP_003249237.1| PREDICTED: hypothetical protein LOC100578955 [Apis mellifera]
          Length = 1563

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 77/224 (34%), Gaps = 10/224 (4%)

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIF--------MLSDMETRFPLNMNVLSMGRVPQV 354
           +E  E  R +   + RS D   ++  +          L   +    L  ++     + + 
Sbjct: 466 EELKEQERRISDEEERSFDRKEVIRLLEEVENLKAERLEYQDENERLAKDLAEQRAIVRK 525

Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +  D    +    + E  F++       +  + ++        L   +   +++N  + +
Sbjct: 526 LTKDYEESKARQEQIEFSFQKHREEYDKLKTKFDVATKETERLLKEIDEFNVLKNTAEAR 585

Query: 415 PVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
              +      +  + + I+N+  +   KL+   +  E+ +   + + ++  L+  ++   
Sbjct: 586 ISSLEEDLQNSLLEKEEIINIESQKTLKLKAQ-LSEEVSDKKKQIKALEDALDEIQRLKE 644

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            I  E ++V +   +            E    D+A   +   ++
Sbjct: 645 TIKTERKDVDDDLKEDISPIESIDDPQESPPTDRAMNIEEFKKE 688


>gi|148685732|gb|EDL17679.1| transforming, acidic coiled-coil containing protein 2, isoform
           CRA_b [Mus musculus]
          Length = 1020

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 7/173 (4%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
                K   AH  +V   +++   +     VE   GLL    ++D  + + R E   K  
Sbjct: 792 SRQDTKREAAHPPDVSISKTALYSRIGSTEVEKPPGLLFQQPDLDSALQVARAEVIAKER 851

Query: 417 MVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQW 472
            VS +    E     ++ +R +  + +    ++  +         ++S+   L    +++
Sbjct: 852 EVSEWRDKYEESRREVVEMREQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRY 911

Query: 473 NQIACEI---REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            ++   +   R+ +E+  K       R    E          +  +++    +
Sbjct: 912 EKMKEVLEGFRKNEEVLKKCAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEI 964


>gi|238810334|dbj|BAH70124.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 790

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 11/169 (6%)

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           L R     R    +E          +  I  Q    ++++   E++  K +P +      
Sbjct: 109 LSRKVIAKRDFATIELNFERFVSQEIRNIYAQKITIKILDSKDEIVKVKLLPGINGQVTN 168

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S    +         +  + L          +     N  V+       +     IL   
Sbjct: 169 S--GTQHFEEGLKNRVTTESLKMQ-------QITTNSNRFVVHHMFTRLLKNNKLILGSN 219

Query: 365 LAHRREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNED 411
             ++ +   R+  F+++   +  E  +L+ L+  + +ID+   I+ N +
Sbjct: 220 DKYQIQTDRRKVYFKIENELKANEELVLEKLMSVHTSIDDEEKILTNSE 268


>gi|167387341|ref|XP_001738121.1| trichohyalin [Entamoeba dispar SAW760]
 gi|165898805|gb|EDR25579.1| trichohyalin, putative [Entamoeba dispar SAW760]
          Length = 1719

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 90/288 (31%), Gaps = 20/288 (6%)

Query: 244 RLGRGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           RL     R    +  E  E  R    ++  E        R+ E+I  L   +        
Sbjct: 361 RLQSDNIRNEKEFQRELTESDRKKQEMIKKE-------KRMEERIQNLHYEELSEKYTSK 413

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF----PLNMNVLSMGRVPQVMPL 357
            DE+ +    V   + +  +   L++     +             +  +    + +   +
Sbjct: 414 VDENYKLSGEVHDMEQKKAELTDLLQQKERQTKRVNSLIDDVSQEILNVEKSILQENKRV 473

Query: 358 DGILKEWLAHRREVLFRRSSFRMQA------IDRRVEILKGLLIAYLNIDEIIAIIRNED 411
               +E    ++++   ++  ++        I  R    K L      ID+    +   +
Sbjct: 474 KDNKREQARIQKQISDIQTQTKVVKMDTHSIIQEREHNEKQLDAKLDKIDDANYELGKLE 533

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                          ++D I+      L++LE    +       AE E+   +LN  K++
Sbjct: 534 MANADADLEKQAASEELDQIVERSQILLQQLESKIARDLSREKKAE-ERSKRILNKDKKK 592

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             + + ++R+ K+      D  +      E      +     + +++ 
Sbjct: 593 AREKSKQLRKEKDAIEIEVDSKKHERRMQEAKLDRISEQYLDIKKQQN 640


>gi|52699551|gb|AAU86898.1| ninein isoform 6 [Homo sapiens]
          Length = 1989

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 100/306 (32%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 662 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 719 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 776

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----------EDKPKPVMVSRFSLTEN 426
             ++  + R E+L+          E +    N            D  K       +L   
Sbjct: 777 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTTQIEAQFQSDCQKVTERCESALQSL 836

Query: 427 QVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +      L+ L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 837 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 896

Query: 486 FSKSTD 491
             K+  
Sbjct: 897 LEKTYK 902


>gi|328867443|gb|EGG15825.1| ENTH/VHS domain-containing protein [Dictyostelium fasciculatum]
          Length = 835

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%)

Query: 231 IIVESRESIVESY-RLGRGGFRVRAR--WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
           I V        SY      G+R  ++  +C+ E  R    I +  + +      +   IA
Sbjct: 165 IYVNDPGFQRVSYDYTQVVGYRNESKIEFCIREYDRNMDQIDIIYL-FIWMDINVRRNIA 223

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNV 345
           +LI         D+  E A  +++++ P N  +    DLL+E +      + R      +
Sbjct: 224 DLINDATKTGSLDLSKEHATAIKLLVKPSNLFVKCAYDLLIEKL-KYKHCQVRLSSLNMI 282

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLF----------RRSSFRMQAIDRRVEIL-KGLL 394
             +    +        +  +     +            + + +  Q     VE   +   
Sbjct: 283 NELFLRSKYFRELICNELSMVFEYAIGTDATKHLPPPAQTAIYMKQKALEYVEKWNESFG 342

Query: 395 IAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
             Y ++      ++N  K K P  +   +  E Q       R R  ++L + +    +  
Sbjct: 343 EHYSHLRVGYNYLKNSLKLKFPERIETLNQREIQEQE----RKRKTQQLLKIKYNQLVQE 398

Query: 454 LLAEKEKIDSLLNSGKQQWNQIA 476
                +K+  LL+  ++    I 
Sbjct: 399 FQPVLKKLQDLLDQIEKSLTSII 421


>gi|321467016|gb|EFX78008.1| hypothetical protein DAPPUDRAFT_105663 [Daphnia pulex]
          Length = 4511

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 89/293 (30%), Gaps = 36/293 (12%)

Query: 280  SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
             +  E+   L+  +          E  + ++     K+R L      + +   S+ + R 
Sbjct: 2416 QKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKETEEKDRLLKEKEEKQRMQKESEEKDRL 2475

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI---DRRVEILKGLLIA 396
                         +    D +LKE    RR         R+Q       R+   +     
Sbjct: 2476 -----------QKEAEEKDRLLKEEEEKRRIQKESEEKDRLQKETEEKDRLLKEEEEKQR 2524

Query: 397  YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL-RLR-------SLRKLEEY--Q 446
                 E    ++ E + K  ++      +     +    RL+        L K EE   +
Sbjct: 2525 MQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKELEEKNRLQKETEEKDRLLKEEEEKQR 2584

Query: 447  IKSELDNLLAEKEKID--SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
            I+ EL+     +++++    L    ++ + +  E  E K+ F   TD         E   
Sbjct: 2585 IQKELEEKDCLQKELEEKERLQKEAEEKDLLLKE-AEEKQHFLTKTDEIEGTKEDIEAEE 2643

Query: 505  AD---------KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
             D             ++ + E+E + +   ++           ++     K  
Sbjct: 2644 KDLTKNETQKEVEVTKRLLKEEESVQLPKESKEKESKQDQQQKEVEGSQIKND 2696


>gi|308190124|ref|YP_003923055.1| maltose phosphorylase [Mycoplasma fermentans JER]
 gi|307624866|gb|ADN69171.1| predicted maltose phosphorylase [Mycoplasma fermentans JER]
          Length = 789

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 11/169 (6%)

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           L R     R    +E          +  I  Q    ++++   E++  K +P +      
Sbjct: 108 LSRKVIAKRDFATIELNFERFVSQEIRNIYAQKITIKILDSKDEIVKVKLLPGINGQVTN 167

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S    +         +  + L          +     N  V+       +     IL   
Sbjct: 168 S--GTQHFEEGLKNRVTTESLKMQ-------QITTNSNRFVVHHMFTRLLKNNKLILGSN 218

Query: 365 LAHRREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNED 411
             ++ +   R+  F+++   +  E  +L+ L+  + +ID+   I+ N +
Sbjct: 219 DKYQIQTDRRKVYFKIENELKANEELVLEKLMSVHTSIDDEEKILTNSE 267


>gi|119586096|gb|EAW65692.1| ninein (GSK3B interacting protein), isoform CRA_a [Homo sapiens]
          Length = 1824

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 380 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 439

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 440 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 496

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 497 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 554

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 555 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 614

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 615 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 674

Query: 486 FSKSTD 491
             K+  
Sbjct: 675 LEKTYK 680


>gi|217031670|ref|ZP_03437175.1| hypothetical protein HPB128_21g228 [Helicobacter pylori B128]
 gi|216946870|gb|EEC25466.1| hypothetical protein HPB128_21g228 [Helicobacter pylori B128]
          Length = 658

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 32/231 (13%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
                  +++  D+  +     +     ++     M  +  +S       +N N++    
Sbjct: 353 RETLEKDIKNAYDDLFDYPIDDIEGMTSAIVSMSAMNELLKISHAINTLKINYNLIRASS 412

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             +++ L                +    ++  I   +      L A  NI+E        
Sbjct: 413 DEKILSLKE--------------KMDIEKINKISSMLHQKAKYLHALKNINEP------- 451

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
                       L    + A+L+ ++    K  +     E + + A+ ++   +L   ++
Sbjct: 452 ----KNPNDLMIL--EDLIALLDFKIE--FKESKELHFKEKEEITAKYKQAKEIL---EK 500

Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             ++   EI++  + FSK          F E+S +  A + Q    KE  T
Sbjct: 501 IPDKQDKEIQKFYKDFSKLLQTPATSQNFEEISHSYDAIISQLKQHKEQTT 551


>gi|319777428|ref|YP_004137079.1| trehalose/maltose hydrolase, phosphorylase [Mycoplasma fermentans
           M64]
 gi|318038503|gb|ADV34702.1| Trehalose/maltose hydrolase, phosphorylase [Mycoplasma fermentans
           M64]
          Length = 789

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 11/169 (6%)

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304
           L R     R    +E          +  I  Q    ++++   E++  K +P +      
Sbjct: 108 LSRKVIAKRDFATIELNFERFVSQEIRNIYAQKITIKILDSKDEIVKVKLLPGINGQVTN 167

Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
           S    +         +  + L          +     N  V+       +     IL   
Sbjct: 168 S--GTQHFEEGLKNRVTTESLKMQ-------QITTNSNRFVVHHMFTRLLKNNKLILGSN 218

Query: 365 LAHRREVLFRRSSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNED 411
             ++ +   R+  F+++   +  E  +L+ L+  + +ID+   I+ N +
Sbjct: 219 DKYQIQTDRRKVYFKIENELKANEELVLEKLMSVHTSIDDEEKILTNSE 267


>gi|227500007|ref|ZP_03930086.1| conjugative transposon mobilization protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227217904|gb|EEI83191.1| conjugative transposon mobilization protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 456

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 16/219 (7%)

Query: 278 QKSRLIEKIAELII-AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
            K ++ E+I   +    +   +   +    +   I+    N  +      E         
Sbjct: 244 TKEKIKERIENKVNEDYKNSEIYYAKKSYKKFDNIIDIEGNEKVKSSKGYEIWAR----- 298

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +  +N    ++ ++ +      +  E       V  ++    +  I    +++  +  A
Sbjct: 299 -KHNMNTMANTLNQLRKYGLSSSMDLENKLQDEAVNRQKI---LNKIKDIEKVMSEIYTA 354

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK----SELD 452
             +I+ I          K     +   +E +   I     +++  LE  Q K     EL 
Sbjct: 355 IEDINTIKINKVIYKTYKENPNDKDFYSEYKPRIIA--YEKAIITLERCQYKNLSIKELS 412

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            L  E +    +L       N +  E+ ++++   K  D
Sbjct: 413 KLYDEYKNKKDILMDDYSNKNILINELTQLRKNTDKYLD 451


>gi|296191990|ref|XP_002743876.1| PREDICTED: myosin-9-like [Callithrix jacchus]
          Length = 545

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 10/196 (5%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           +     +    D       N          +    D +L E      +    R       
Sbjct: 164 ENTKTRLQHELDDLLVDLDNQRQTVCHLEKKQKKFDQLLAEEKTISAKYAEERDQAE--- 220

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
            + R +  K LL+A    + +   +  E   K   V    +  ++  ++  L+ R L   
Sbjct: 221 AEAREKETKALLLARALKEAMEQKVELERLNKQFRVEMEDIMSSKGKSVHELKSRQL--- 277

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
               ++ +++ L  + E+++  L   +    Q+   ++  K  F +      +++   + 
Sbjct: 278 ----LEQQVEELKTQLEELEDELQDTENTNLQLEVNLQAKKIQFEQDLQGWDKQSEEKQQ 333

Query: 503 SRADKATLQQAMIEKE 518
               +    +A +E E
Sbjct: 334 QLVRQVREMEAELEDE 349


>gi|223999403|ref|XP_002289374.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974582|gb|EED92911.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 478

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 78/242 (32%), Gaps = 22/242 (9%)

Query: 284 EKIAELIIAKRIPLLEDIRDES---AEDVRIVLFPKNRSLDP--DLLMESIFMLSDMETR 338
           E+I    +  +   + + RDE+     D+R+ L    +      + L   +  +S   + 
Sbjct: 219 ERIERHALEYK--AVVEARDEAYGRVNDLRVGLEVVQKEAAALREELKGVLTEISQTMSS 276

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS--FRMQAIDRRVEILKGLLIA 396
           F  ++N  +     +++     ++                    + +     I       
Sbjct: 277 FSPDINDTAEQVQHRLVTRLESVRSECKTEMVDAIDDVERVHEEEKLCWEATIQNWKEAF 336

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
            +  D+  A+    +           ++E + +       + L +    +I  EL     
Sbjct: 337 EVERDKAAAVQTQLND---------KMSELETER----NEQCLSQTTMQRIGDELLRANN 383

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           E  ++++LL   + +  +   EI +  +      D   +R+    +   +K   Q     
Sbjct: 384 EIARLNTLLKDEESKKQKELEEIDDKMKRELDDIDTRVKRSFKALIDSKNKEIEQVMQRA 443

Query: 517 KE 518
           ++
Sbjct: 444 ED 445


>gi|118084268|ref|XP_416892.2| PREDICTED: similar to cp431 [Gallus gallus]
          Length = 1152

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI----------FMLSDMETRFPL 341
              I  LE+ RD        +L           L+  I             +  E     
Sbjct: 183 DTFIKTLEEDRDYYKSKTENLLRVLRNKSSSPKLICYIISIFLVYCCFKKQAQEEISHTC 242

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRRE--VLFRRSSFRMQAIDRRVEI-----LKGLL 394
              +         +    +L+     R       RR +    ++  +++I          
Sbjct: 243 QEVIKCTRTPRSTVAAQAMLRHVETERDTALSDLRRMTTERDSLREQMKISQETAFNEKA 302

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI---LNLRLRSLRKLEEY--QIKS 449
                I+E+   I+N D  +   +SR +L +  +D++   + +  R  +  E      K 
Sbjct: 303 HLQQRIEELETTIQNLDSERLEQMSRMALMKEHIDSLETEVKIMARRSQDSENELSHQKD 362

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           E  +L   KEK + +L+  ++   +   EI+  +E 
Sbjct: 363 EYISLSLMKEKTEQILSEAQRNLTKKKYEIQLNEEK 398


>gi|310801373|gb|EFQ36266.1| microtubule associated protein [Glomerella graminicola M1.001]
          Length = 1541

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 20/173 (11%)

Query: 346  LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
            +S  ++        +          V  +R +  +    +             ++D  + 
Sbjct: 848  ISEIKLQNQELQRELEGCMADFETAVEGKREAEEIAVALQE------------DLDNAMN 895

Query: 406  IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
             +      +   +   +  E + +A     LR   + E   ++ E D    E +++   L
Sbjct: 896  DLVALQAERDEALREQADMETEFEA-----LRKEAQEEIDALEGEADQRNDEIQRLQHEL 950

Query: 466  NSGKQQWNQIACEIREVKEI---FSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            N   + ++ +  E+R++ E             RR    E   AD     + + 
Sbjct: 951  NDRTENFDALQEEMRKMSEALVGLEDEQAAKIRRIQQLEQELADANKESEELE 1003


>gi|119586099|gb|EAW65695.1| ninein (GSK3B interacting protein), isoform CRA_d [Homo sapiens]
          Length = 1767

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 380 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 439

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
             T    + Q S L  +IAEL     ++ +         +E  + +++ L  +   L   
Sbjct: 440 THT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEK 496

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                 ME    L+  +  F      L  S     +V  L   L+++  H+ ++      
Sbjct: 497 LRLQHEMELKARLTQAQASFEREREGLQSSAWTEEKVRGLTQELEQF--HQEQLTSLVEK 554

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434
             ++  + R E+L+          E +    N    +           +TE    A+ +L
Sbjct: 555 HTLEKEELRKELLEKHQRELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSL 614

Query: 435 ---------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
                     L+  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+
Sbjct: 615 EGRYRQELKDLQEQQREEKSQWEFEKDELTQECAEAQELLKETLKREKTTSLVLTQEREM 674

Query: 486 FSKSTD 491
             K+  
Sbjct: 675 LEKTYK 680


>gi|253746261|gb|EET01668.1| Coiled-coil protein [Giardia intestinalis ATCC 50581]
          Length = 1596

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 267  CIVVT----EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA------------EDVR 310
             IV++    E  Y     R+IE +AE        + +  RD                   
Sbjct: 889  TIVISGYGEEQAYNTLAERIIELVAEQHETNMNSMDDCYRDIEMAHINIADLRLCMRKTD 948

Query: 311  IVLFPKNR-SLDPDLLMESIFMLSDME----TRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
             V+   +R S+D    +  + +++  +          MN+L       V  +   ++   
Sbjct: 949  RVMDLYDRFSVDDQKRLYELQLIAQRKNAELVSLVRYMNLLVQAYQLSVTAIKQSVESQE 1008

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
               +      S+  ++  ++ VE+ + L  A  + ++ ++ I ++ +             
Sbjct: 1009 CTGKINGVEISTVLLEKDEQIVELQEALKAARDHGEQRVSNISHDMRLAQDKCELLEKQL 1068

Query: 426  NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSG 468
             +  AI + +++ L    +    S L +   + ++++ +   LNS 
Sbjct: 1069 MEYKAIADGQIQPLSADGDDYFYSLLADRDRQIKELNDIVSMLNSD 1114


>gi|218662255|ref|ZP_03518185.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 125

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 649 KMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRL-QSYKDGGISDV 700
           ++     V  GD + +V +  +L+   +  I   SR  KGV +  + KD  +  V
Sbjct: 26  ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSV 80


>gi|116179588|ref|XP_001219643.1| hypothetical protein CHGG_00422 [Chaetomium globosum CBS 148.51]
 gi|88184719|gb|EAQ92187.1| hypothetical protein CHGG_00422 [Chaetomium globosum CBS 148.51]
          Length = 1454

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 25/303 (8%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           E    + +    G R + +   EE        +  E     +     +++ +     +  
Sbjct: 454 EEERSAQQKEIDGMRAKLKEAREERDSSERIRLSLEARVDEEHGSWRKELEDARHQLKEA 513

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-----IFMLSDMETRFPLNMNVLSMGRV 351
            LE    +SAE +R+ L  K      DL M +     +    D  T    ++        
Sbjct: 514 RLE---RDSAEHIRLTLESKLAQAQADLNMRNDEKALLQTRHDALTSESTSLQREVTKLK 570

Query: 352 PQVMPLDGILKEWLAHRREVLFR-RSSFRMQAIDRRVEI------LKGLLIAYLNIDEI- 403
             +   +  L++   H   +    R+ FR +      EI       +     Y N  E  
Sbjct: 571 QSIAEAEDSLEQERQHALGIEQDIRNQFRTEIERLNDEISDLQAECRERDNLYDNDSEKW 630

Query: 404 ------IAIIRNEDKPKPVMVSRFSLTENQVDAIL---NLRLRSLRKLEEYQIKSELDNL 454
                 +   R+  + +   + R        +  L     +L+   + E  + + +   L
Sbjct: 631 ESERHNLEAERDRAEERAAGLQRTIDKLRDTEGALSSKETKLQEALQSEAERHRKDEAIL 690

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             + +++   L+S +     +  E+  V++   +S      R    E    +   LQ  +
Sbjct: 691 QTQIDQLQQDLSSRQDMLEDLRSELSAVRDELRQSRLECEARGEKVEALEDEVEILQATL 750

Query: 515 IEK 517
            E+
Sbjct: 751 DEE 753


>gi|324499815|gb|ADY39931.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1755

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 21/253 (8%)

Query: 277 VQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
               + +EK+AEL    +            E   I+   +    D D L + +  L    
Sbjct: 621 TSAQKEVEKLAELNNKLQ-----------KEKQDILNQKQKGESDVDALKDKLRKLEQEV 669

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
            +  L    L             +     AH  E     +   +  + +++  +      
Sbjct: 670 DKLRLENRTLHDSEQKANDAYKEM--ANKAHLLEKELEDAKNEIDELRKKLNRID----- 722

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKLEEYQIKSELDN 453
             N ++I   +  +  P      R   +  +   I  +R++ L    KL+  ++++E D 
Sbjct: 723 QENREKIELTLMTKAAPDEKSKEREITSTYESTHIHEIRVKELGDKYKLDLDKLENERDE 782

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L      ++  L   ++  ++   +I +++       D  +      +    +    ++ 
Sbjct: 783 LERRVHLLEDELTEKQRNVDRQEADIEDLRRKHQLEVDRLKAEMANLQTKYQNDLDDERD 842

Query: 514 MIEKEPITVVISN 526
               +   +  + 
Sbjct: 843 QNSHDIEVMKATE 855


>gi|196001827|ref|XP_002110781.1| hypothetical protein TRIADDRAFT_54045 [Trichoplax adhaerens]
 gi|190586732|gb|EDV26785.1| hypothetical protein TRIADDRAFT_54045 [Trichoplax adhaerens]
          Length = 635

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 69/209 (33%), Gaps = 8/209 (3%)

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
           +    +    ++    +   +   +K       E   RR     +   R   +L+   + 
Sbjct: 306 SSINESETKTTLQFGARAKTIKNSVKVNEELPAEEWKRRYEKEREKSSRIKRVLENYELE 365

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
                +   +  NE   +        LT N   + +N+   +L + E  Q   E + L  
Sbjct: 366 LKKWRDGENVPVNE---QAGGKDEGKLTSNHSTSKINIAD-ALGESERVQFDEERNRLYE 421

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD----KATLQQ 512
           + ++ D  LN+      Q+  ++ +  E F    +   RR         +    K  +++
Sbjct: 422 QIDEKDDELNNRNTLIEQLRRQLEDKDEEFHLIKNESTRRQAQINALEDELQDSKDEVKE 481

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLS 541
            +   E + V    +     +KS   + +
Sbjct: 482 VLNALEELYVNFDEKSRQLEVKSQEYEKN 510


>gi|156396747|ref|XP_001637554.1| predicted protein [Nematostella vectensis]
 gi|156224667|gb|EDO45491.1| predicted protein [Nematostella vectensis]
          Length = 739

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 7/181 (3%)

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           V+      LD      +     D           L M R  +      +  +      E+
Sbjct: 407 VVEDSGDFLDGITTNNTQHNEGDFVDNEIPCPEDLDMWRKLREFEEREVELKEEIF--EL 464

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-RFSLTENQVDA 430
             +  + +++ + R  EI +   +   +  E   +  NE+  +  ++  R  L   +  A
Sbjct: 465 ENQVETLKLEKLKRDREIERLEALLRKSAKENNRLFMNENAAEETILEMRVELENWKTKA 524

Query: 431 -ILNLRL---RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
             ++ +L   R L + E    +++++ +  E +    +     ++  ++  E+RE K+  
Sbjct: 525 QDIDAKLEATRRLHQEETICYENQINEVNEEIQNETDIGLQKSKRLQEMELELREYKQRL 584

Query: 487 S 487
           S
Sbjct: 585 S 585


>gi|326935493|ref|XP_003213804.1| PREDICTED: TBC1 domain family member 25-like, partial [Meleagris
           gallopavo]
          Length = 701

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 3/116 (2%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
            +Q +  R      L        +    +R   +              Q   +L L+ + 
Sbjct: 70  ELQEVQSR---HDALQAQLQERSQEQEELRQRLEAAESTQGDTEQRLRQAQELLELQAQE 126

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
                    +     L     ++ +LL   ++Q      E R +++      D  R
Sbjct: 127 HMAATRAHREQHRAELEGRVGELRALLGDAERQRELQEAEGRALRQELKDVRDGQR 182


>gi|312138187|ref|YP_004005523.1| hypothetical protein REQ_07210 [Rhodococcus equi 103S]
 gi|325674908|ref|ZP_08154595.1| hypothetical protein HMPREF0724_12377 [Rhodococcus equi ATCC 33707]
 gi|311887526|emb|CBH46838.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325554494|gb|EGD24169.1| hypothetical protein HMPREF0724_12377 [Rhodococcus equi ATCC 33707]
          Length = 223

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQVDAILNLRLR 437
             +  R EI   LL A     E++  I   +     + +   L   ++   +A+L LR  
Sbjct: 7   DQVIDRREIASALLKALDRRHEVLDAIVESNDRAAAVAAVRDLLDTSDFCAEAVLGLRFD 66

Query: 438 SLRKLEEYQIKSELDNLLAEKEKI 461
            L   E  +I++EL++L A  + +
Sbjct: 67  RLTVKERDRIRTELEDLDATLQWL 90


>gi|225555243|gb|EEH03535.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 700

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                +    N++   +  +     LD  L        + L R      Q      +I  
Sbjct: 100 HHPDLSSEVANLSDKLIQALNSQTILDDTLAATRQELEQALIRIGQLEEQTRQYEADITN 159

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR----------- 440
           G+L+  ++++   A ++  D+       R ++ + +  AI  L L +L            
Sbjct: 160 GVLMRRVDVETEWAKLK--DEAAEQRTQRATIEKEK-KAI-ELELENLTAALFEEANKMV 215

Query: 441 ---KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
              +LE   ++   + L A+ +  + LL S ++Q      E++ V +  +   D  R RT
Sbjct: 216 AAAQLEREIVERRNEQLRAQIKDNEILLASQQEQL----SELKVVIQNMNTDQDEIRSRT 271


>gi|171684541|ref|XP_001907212.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942231|emb|CAP67883.1| unnamed protein product [Podospora anserina S mat+]
          Length = 617

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
             NID++IA   +E + K +   +  L   Q      L  R  +KL   +++ E  +   
Sbjct: 231 LTNIDQLIAQSTDEQEIKELKQQKRLLRNRQA----ALDSRQRKKLHTERLEDEKKHFTE 286

Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVK 483
               ++  +   +++  +++ E ++ +
Sbjct: 287 VISSLEDTIADLQRELEKLSMEKQDYQ 313


>gi|71649321|ref|XP_813389.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878266|gb|EAN91538.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 838

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 83/251 (33%), Gaps = 11/251 (4%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           Q    +L  K  E + A         ++E+ E+       + ++++     E +  L+  
Sbjct: 461 QNLSDQLRAKYEEFVKANNTIQSLYRQNETQEN-----ELQQKNIENAKQAEELEKLTIE 515

Query: 336 ETRF--PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
             +    L        R+   +       E LA   E     +    + ++++    + L
Sbjct: 516 NEKLADELEKLATDNERLADELEQKAAENERLADELEQKAAENERLAEELEQKAAENEKL 575

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKLEEYQIKSE 450
                        +  E + K     R +    Q  A  N RL      +  E  ++  E
Sbjct: 576 ADELEQKAAENERLAEELEQKAAENERLAEELEQ-KAAENERLAEELEQKAAENERLAEE 634

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           L+   AE E++   L     +  ++A E+ +      +  D  +R     E +  ++  +
Sbjct: 635 LEQKAAENERLAEELEQKAAENERLAEELEQKAAENERLLDDKKRLEEELERNVLERERI 694

Query: 511 QQAMIEKEPIT 521
           +     +E + 
Sbjct: 695 ESECRSRELVV 705


>gi|225849633|ref|YP_002729867.1| phosphodiesterase [Persephonella marina EX-H1]
 gi|225645450|gb|ACO03636.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 553

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
           +   + I +E      E++    +   +  +  V   + L      I E   + R ++  
Sbjct: 41  IKNKEEIEREARRKAEEIIKEFEAEAKRKAEEIVREAESLKQQQEIIIEKEILKRKQELE 100

Query: 414 KPVMVSRFSL-----TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
           K +   R  L     T    +A L  RL  L        + ELD    E +K++  + S 
Sbjct: 101 KELKSEREELQNLEKTLMSREAQLEKRLARL-----EHREEELDKKWDEIKKLEEEIRSI 155

Query: 469 KQQWNQIACEIREVKEIF 486
           +++  +   +++  +E +
Sbjct: 156 QKEIEEKEAKLKAAEEQY 173


>gi|54020293|ref|YP_116186.1| p115 protein [Mycoplasma hyopneumoniae 232]
 gi|53987466|gb|AAV27667.1| p115 protein [Mycoplasma hyopneumoniae 232]
          Length = 979

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            + ++++ +     +I L +  + ES E   IV   K    + + + E +  L   E +F
Sbjct: 198 EKQVKQLEKQAENAKIYLEKSKQLESVEVGLIVSDIKKYQTELNQVQEKLNDLKFQEPKF 257

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              +       +        I  E           R   R++     + +          
Sbjct: 258 ISEIEANEKIIITNTQKRSEIEAEIN------TKNREIHRLKEQINTLNLAYAKATQLQE 311

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR-SLRKLEEYQIKSELDNLLAEK 458
           +     I  N ++    +  ++SL   Q D    L  +  L+KLE  +  +       E 
Sbjct: 312 MILSSEISVNFEQKMAALRQKYSLISAQKDNFAKLISQNKLKKLEIEEKLNTFRTQKGEI 371

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE 484
           E+    LNS K        E+++  E
Sbjct: 372 ERNLYSLNSEKIISQTRISELKKSLE 397


>gi|302334170|gb|ADL24363.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 664

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  IRD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSIRDQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|313898279|ref|ZP_07831816.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312956661|gb|EFR38292.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 1406

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 82/249 (32%), Gaps = 13/249 (5%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           E     Y      F+ + R  VE++      +  TE  YQ + + + EKI E    + I 
Sbjct: 511 EEHKSKYTKAVELFQKQLRV-VEQIKIKLKTVCDTERHYQNELANIKEKIKE---NENIL 566

Query: 297 LLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
            ++  + ++ +  R       + +   L  E     S  +        V  +     V  
Sbjct: 567 SIQKQQIDTLKTNRKQELCMKKEMLSYLNAEEKEASSKAQLVLDKKQVVSELKDRETVCR 626

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            + +  E    R       + FR++ +  +      + +  +  D   A    ED     
Sbjct: 627 DEIMRLESS--RSLKETFMAIFRVKTLKSKEISDLYIKLKTIESDITYATSVWEDAEAEC 684

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
              R   +E  +       L   + ++   I  E+       ++++  +    ++  +I 
Sbjct: 685 HKQRDKCSEMDL-------LIESQGIKIKSISDEIKKTEKAIDQLNKDIEHENKRLQEIE 737

Query: 477 CEIREVKEI 485
             + + +E 
Sbjct: 738 NNLLKWQEK 746


>gi|190344951|gb|EDK36745.2| hypothetical protein PGUG_00843 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 485

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 275 YQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMES 328
           Y+ +K RLIEK+ +   LI+  +   ++ ++     D  I   V+     +L+      S
Sbjct: 252 YRDEKGRLIEKLEDQHYLILEAKKD-IDKLKSYMHTDFDILNKVIEDLRSNLNEYQQAAS 310

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA--HRREVLFRRSSFRMQAIDRR 386
                +      +    +    +  +  +   +   LA  +R      +    ++   + 
Sbjct: 311 SQEQRNRNINISIEAFQIIEQNIKNLFKILEEVSNDLARQNRIAEELNKHQDMLEEKKQE 370

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL--EE 444
                  + A         I  NE+K + +       TE Q      LR +   KL  + 
Sbjct: 371 SHEYGRQISALQ-----RKINVNEEKTQKLREGFNRETERQQQETATLR-QEYEKLSQDR 424

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + EL+    E  + + ++NS K ++N 
Sbjct: 425 ATKEEELERTRKEINRYEHMINSEKNEFNI 454


>gi|17944883|gb|AAL48506.1| LD29123p [Drosophila melanogaster]
          Length = 1299

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LIARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|195021077|ref|XP_001985325.1| GH17000 [Drosophila grimshawi]
 gi|193898807|gb|EDV97673.1| GH17000 [Drosophila grimshawi]
          Length = 653

 Score = 40.1 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +       R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 227 RRWIEKENKVARIKRKKEEMTRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 286

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    R + E  +  E  +  AE+++I+ +    +QQ   +  E + +++   
Sbjct: 287 AQ-----KAEQERAVREAALVKEKAD-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKIK 340

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 341 DCKYYAKN 348


>gi|283471769|emb|CAQ50980.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 664

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYDEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|269995961|ref|NP_082000.2| cancer-associated gene 1 protein homolog [Mus musculus]
 gi|151357906|emb|CAO77727.1| cancer antigen 1 [Mus musculus]
          Length = 849

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I +  E +     P +      +  +    LF    S   +L ++ +   S + +     
Sbjct: 574 ITQSKEQLEEAVEPDITQETKGTHCN----LFLNRSSCKENLELQPLKKTSPLASGIHSL 629

Query: 343 MNVLS--MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           + +    +       P   + +E       +L R    +++  D    + K LL     I
Sbjct: 630 LALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKD----LDKELLKHKNRI 685

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-LRKLEEYQIKSELDNLLAEKE 459
             +  +I +E   K +      +T+   D + + R    L  ++  +  S  + L     
Sbjct: 686 ATLKELIASE---KALQAHTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLIT 742

Query: 460 KIDSLLNSGKQQWNQIACE 478
           K+  LL S +  ++++  E
Sbjct: 743 KLGGLLESKEDHYSRLIEE 761


>gi|24650642|ref|NP_524532.2| Kinesin-like protein at 98A [Drosophila melanogaster]
 gi|23172441|gb|AAF56718.2| Kinesin-like protein at 98A [Drosophila melanogaster]
          Length = 1265

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LIARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|326796211|ref|YP_004314031.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
 gi|326546975|gb|ADZ92195.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1]
          Length = 861

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 23/283 (8%)

Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
           RG F  R +  + E+ +    I++            I++I  ++ A +     D  +   
Sbjct: 252 RGEFEERLKAVLNELAKQEGQIIL-----------FIDEIHTMVGAGKSEGSMDAGNMLK 300

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +         +   D   + I   + +E RF   + V     +  +  L G+ + +  
Sbjct: 301 PALARGELHCVGATTLDEYRQFIEKDAALERRF-QKVLVEEPTVLDSIAILRGLKERYEV 359

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
           H    +   +      +  R    + L   A   IDE  + IR E   KP  + R     
Sbjct: 360 HHGVDITDPAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEMDSKPENLDRLERRL 419

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA------CEI 479
            Q    L +   +L+K  +   K  L  L +E E++    +  ++ WN          ++
Sbjct: 420 IQ----LKIEKEALKKETDRSSKQRLKELESEIERLQKEYSDLEEIWNAEKAQVQGAQKL 475

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           +E  E   +  +  RR+    ++S      +     E E  T+
Sbjct: 476 KEELEQVKQEMEEARRQGNLAKMSELQYGVIPMLEAEIEKATL 518


>gi|148708985|gb|EDL40931.1| cancer antigen 1 [Mus musculus]
          Length = 849

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I +  E +     P +      +  +    LF    S   +L ++ +   S + +     
Sbjct: 574 ITQSKEQLEEAVEPDITQETKGTHCN----LFLNRSSCKENLELQPLKKTSPLASGIHSL 629

Query: 343 MNVLS--MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           + +    +       P   + +E       +L R    +++  D    + K LL     I
Sbjct: 630 LALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKD----LDKELLKHKNRI 685

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-LRKLEEYQIKSELDNLLAEKE 459
             +  +I +E   K +      +T+   D + + R    L  ++  +  S  + L     
Sbjct: 686 ATLKELIASE---KALQAHTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLIT 742

Query: 460 KIDSLLNSGKQQWNQIACE 478
           K+  LL S +  ++++  E
Sbjct: 743 KLGGLLESKEDHYSRLIEE 761


>gi|159110401|ref|XP_001705461.1| Protein 21.1 [Giardia lamblia ATCC 50803]
 gi|157433546|gb|EDO77787.1| Protein 21.1 [Giardia lamblia ATCC 50803]
          Length = 834

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 31/249 (12%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI---EKIAELII-A 292
            S+   Y + +     + R    E        V  +  YQ  +++L    E + EL    
Sbjct: 246 NSLELMYEVAKRDLEDKCR----EYENLKEDFVTLQNEYQDVRNQLRIMSESVEELTNPN 301

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
            ++     IRDE  E++      K  +   D  +E +    D E      +       + 
Sbjct: 302 SKLAKRMGIRDEREEELLR---LKAENERLDEEVEKLRKYID-EDVVSTTLFNSVEQNLK 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            V+ +       L  + +  F       + +     I + LL                  
Sbjct: 358 NVINIKDQEISKLEEKIQQNFVDVEALERKVLEAQHIKEQLLKL---------------- 401

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +       + T  Q +AIL L+   L + +    ++    L  E  ++ +LL +  +++
Sbjct: 402 -QNEHAEARNETFVQNEAILELKD-ELARYKSSDGRT-AKQLEDEVAELRALLANKSEEF 458

Query: 473 NQIACEIRE 481
             +  ++ E
Sbjct: 459 EHLKSDMYE 467


>gi|313240867|emb|CBY33155.1| unnamed protein product [Oikopleura dioica]
          Length = 2212

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 13/202 (6%)

Query: 287  AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
             EL+ A +   +    D  A    +    K +++    L+  +    +    FP   +  
Sbjct: 1175 EELVDALK---IAINFDNQAHQGHLQFVYKEQTILARQLITRLDEKVEEIVAFPSLQSSS 1231

Query: 347  SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
               +           +E      ++  +           +    + L      +     I
Sbjct: 1232 KDSKNLAFDNFKRRTQELEQQILDLQDKVEELEKDKEMTQYSKTRKLGHLVEQLSNFNTI 1291

Query: 407  IRNEDKPK--PVMVSRFSLTENQVDAILNLR-LRSLRKLEEYQIKSELDNLL-------A 456
                 + K   + + +  L+      I +L+ L      E    +  L  L         
Sbjct: 1292 EMKSIRSKGEKISIEKPDLSNEVNSTIDSLQKLIDATSEEFTDFRQHLSELYSAENEYKD 1351

Query: 457  EKEKIDSLLNSGKQQWNQIACE 478
            E   I  LL + ++   +I  E
Sbjct: 1352 EIAVIKQLLKNVEKVITEIKEE 1373


>gi|81889075|sp|Q5IR70|CAGE1_MOUSE RecName: Full=Cancer-associated gene 1 protein homolog;
           Short=CAGE-1; AltName: Full=Cancer/testis antigen 3
           homolog; Short=CT3 homolog
 gi|56555170|gb|AAV98203.1| cancer/testis antigen CAGE-1 [Mus musculus]
          Length = 849

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           I +  E +     P +      +  +    LF    S   +L ++ +   S + +     
Sbjct: 574 ITQSKEQLEEAVEPDITQETKGTHCN----LFLNRSSCKENLELQPLKKTSPLASGIHSL 629

Query: 343 MNVLS--MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
           + +    +       P   + +E       +L R    +++  D    + K LL     I
Sbjct: 630 LALRIGLLTCQDLATPDAELCQESKKANDIMLQRLKDCQLKKKD----LDKELLKHKNRI 685

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS-LRKLEEYQIKSELDNLLAEKE 459
             +  +I +E   K +      +T+   D + + R    L  ++  +  S  + L     
Sbjct: 686 ATLKELIASE---KALQAHTIEITDFDADEVKSARDAPVLLAVKLDKYHSLNEELDVLIT 742

Query: 460 KIDSLLNSGKQQWNQIACE 478
           K+  LL S +  ++++  E
Sbjct: 743 KLGGLLESKEDHYSRLIEE 761


>gi|326676759|ref|XP_003200670.1| PREDICTED: hypothetical protein LOC100535641 [Danio rerio]
          Length = 4292

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 81/262 (30%), Gaps = 33/262 (12%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +KIA+      I    ++++E+     I    K        +   +    +         
Sbjct: 517 QKIAD-EQDLLIQNKSELQNENERIKNINEVIKKERETLKEMEAYLEKEKEEMKS----- 570

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
             ++     Q   L+ +       ++++  +R     +  +      K L       D  
Sbjct: 571 --ITEETRRQKEDLEKMSTHINEQKQDLRSQRDLLEQER-EEINHKWKQLQQRIDEFDAQ 627

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDA-ILNLRLR-----------------------SL 439
           ++  + ED PK   +     +  +  A IL ++ +                        +
Sbjct: 628 VSKQKEEDLPKEKEMKEDRKSLEETKANILEMKTKAEPEEIKKEKEKEEEEQEMRVKVEM 687

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            + E  QIKS+L+ + +E +     LN  K+   Q   ++ ++K    K         + 
Sbjct: 688 ERKEIEQIKSQLERVRSEMDHEQKKLNDDKKMIEQEKEDLEKMKSEIMKQRQQMEEERSE 747

Query: 500 CEVSRADKATLQQAMIEKEPIT 521
            +         +  +   + I 
Sbjct: 748 LDKKIKQTDLEKHDIENSKEIV 769



 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 109/321 (33%), Gaps = 21/321 (6%)

Query: 195  NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
            +++++    +      E    +L + I   D     I  E+ + IVE   +     +   
Sbjct: 726  DLEKMKSEIMKQRQQMEEERSELDKKIKQTDLEKHDI--ENSKEIVEKLMVEVEKQKHEI 783

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            ++  EE+      I   +         +  KI +    +RI  +++   +  E ++ +  
Sbjct: 784  QFQKEELDIERQKIADEQ------DLLIQNKIEQQNENERIKEMDEEIKKERETLKEMEV 837

Query: 315  PKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
               +  +  + ++E      +   +   ++N      + Q   L    +E      ++  
Sbjct: 838  NLQKEKEEIESVIEETQRRKEDLEKMSTDINEQKQDLMNQRDLLKQEREEMNHKLTQLQQ 897

Query: 374  RRSSFRMQ-------AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            R   F           ++ + E+ + L  A   I E  +II   ++ +  +         
Sbjct: 898  RIDEFETTSNILVTTKMEEKTEMDEKLQQA---IKEYESIIEETNRKRTELEEIEVDQSQ 954

Query: 427  QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
            Q   +  ++   L + E    + E + L  + + ++  +     +       + E K++ 
Sbjct: 955  QNKNVETMKD--LLEKERKDTEKEREELQKQADDLEMQMIEHGDKEEMSKRSLDEEKKLL 1012

Query: 487  SKSTDLGRRRTTFCEVSRADK 507
             +  +   R+    E  + D 
Sbjct: 1013 EQKANEILRQRDDLEKEKEDM 1033


>gi|301768611|ref|XP_002919721.1| PREDICTED: serine/threonine-protein kinase TAO3-like [Ailuropoda
           melanoleuca]
 gi|281344054|gb|EFB19638.1| hypothetical protein PANDA_008373 [Ailuropoda melanoleuca]
          Length = 898

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 84/259 (32%), Gaps = 16/259 (6%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +  + E++       +    DES  +    + PK   +             +      + 
Sbjct: 364 VNSMQEVMDENSSEPIMMHDDESTVNFSSSVVPKKDHVFIRDEAGHGDPRPEPRPTQSVQ 423

Query: 343 MNVLSMGRVPQVMPLDG---ILKEWLAHRREVLFRR----SSFRMQAIDRRVEILKGLLI 395
              L      +   +     + ++   H +E   R          +   +++  L+  L 
Sbjct: 424 SQALHYRNRERFATIKSASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLIALENKLK 483

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A ++   +      E       +    L + QV AI+  +   +   +E + + ++  L 
Sbjct: 484 AEMDEHRLKLQKEVETHANNSSIELEKLAKKQV-AIIE-KEAKVAAADEKKFQQQI--LA 539

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +K+ + + L S K+Q+     +I+E         D    +    E     K  LQ    
Sbjct: 540 QQKKDLTTFLESQKKQYKICKEKIKEEMN-----EDHSTPKKEKQERISKHKENLQHTQA 594

Query: 516 EKEPITVVISNRGWIRSLK 534
           E+E   +      + ++ +
Sbjct: 595 EEEAHLLTQQRLYYDKNCR 613


>gi|221508386|gb|EEE33973.1| intersectin, putative [Toxoplasma gondii VEG]
          Length = 1267

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           + +   ++  F    I+R +   ++ LL     +D++   I    +    +V+     + 
Sbjct: 713 QLKEERKKIEFERIGIERDLSHYVEELLFLRGQVDDMQRDIDALHQANQTLVATHRHQQI 772

Query: 427 QVDAILNLRLRSLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           Q   +   RL++  +L  E   ++ E      E  ++ +LL+  +++ 
Sbjct: 773 QAQNLHATRLQAQEQLRGEREALQKE----EREIAELKALLSRMRREK 816


>gi|221486630|gb|EEE24891.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1267

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           + +   ++  F    I+R +   ++ LL     +D++   I    +    +V+     + 
Sbjct: 713 QLKEERKKIEFERIGIERDLSHYVEELLFLRGQVDDMQRDIDALHQANQTLVATHRHQQI 772

Query: 427 QVDAILNLRLRSLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           Q   +   RL++  +L  E   ++ E      E  ++ +LL+  +++ 
Sbjct: 773 QAQNLHATRLQAQEQLRGEREALQKE----EREIAELKALLSRMRREK 816


>gi|237834211|ref|XP_002366403.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211964067|gb|EEA99262.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
          Length = 1267

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           + +   ++  F    I+R +   ++ LL     +D++   I    +    +V+     + 
Sbjct: 713 QLKEERKKIEFERIGIERDLSHYVEELLFLRGQVDDMQRDIDALHQANQTLVATHRHQQI 772

Query: 427 QVDAILNLRLRSLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
           Q   +   RL++  +L  E   ++ E      E  ++ +LL+  +++ 
Sbjct: 773 QAQNLHATRLQAQEQLRGEREALQKE----EREIAELKALLSRMRREK 816


>gi|167465536|ref|ZP_02330625.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 86

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 637 KGKTFLKV--SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK 693
           KG   L V   +   + L V    + + ++  +  ++  S+  I  M R  +GVRL + +
Sbjct: 2   KGIKTLNVTSKNGPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTR 61

Query: 694 DGGISDVIC 702
           +      + 
Sbjct: 62  EDDEVATVT 70


>gi|146184747|ref|XP_001030049.2| hypothetical protein TTHERM_01164060 [Tetrahymena thermophila]
 gi|146142674|gb|EAR82386.2| hypothetical protein TTHERM_01164060 [Tetrahymena thermophila
           SB210]
          Length = 1339

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            +  E IAE            I+DE  ++++ +   + ++ D    ++ +     ME   
Sbjct: 298 QKEAEYIAEQKR---------IKDEKEKELQRLREMQEKANDRQAELDFLRAKRAMEQN- 347

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
               N     R    +    I +E L  RR+  + +     +                  
Sbjct: 348 --ERNARDKERREAELRQK-INQELLEARRQQQYEKEQRLQEQAKNDR------------ 392

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            DE   II+ + + + + +      E Q+    +  LR    L E +IK +  N L E +
Sbjct: 393 -DEFQRIIQAQKQEREIEIKLQIEREQQIKKHAD-ELRKQIALNEEKIKQDQRNRLEEGK 450

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           KI   L   K+    I  +  E  +  +     
Sbjct: 451 KIRDQLQQQKKMLESIKSQKLEQLQKMNIPQKY 483


>gi|195377960|ref|XP_002047755.1| GJ13609 [Drosophila virilis]
 gi|194154913|gb|EDW70097.1| GJ13609 [Drosophila virilis]
          Length = 636

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 227 RRWIEKENKAARIKRKKEEMTRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 286

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    R + E  +  E  +  AE+++I+ +    +QQ   +  E + +++   
Sbjct: 287 AQ-----KAEQERAVREAALAKEKAD-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKVK 340

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 341 DCKYYAKN 348


>gi|326478159|gb|EGE02169.1| dynactin [Trichophyton equinum CBS 127.97]
          Length = 1351

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 29/245 (11%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           GS  +V  E+     K +++EK       +++ ++E  R E  +   I+   + +     
Sbjct: 297 GSNMLVQKELDDLKTKLKIMEK-KRAEDREKLKMVETYRAERDKFETIIQKLREKYQPQQ 355

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             + ++      E  + +            ++ +  + +E           ++ +    I
Sbjct: 356 QEITTLRKQL-KEAEYRVEEVERLQAEHESILEMAALDREMAE--EVAESIKAEYEALKI 412

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                 L+  ++   N D++  ++  E+K     +      E   +A+  +RLR + + +
Sbjct: 413 RTEELELEVEVLKEEN-DQLGQVMSPEEKSSQGWLQMERTNERLREAL--IRLRDMTQQQ 469

Query: 444 EYQIKSELDNLLAEKEKI-----------DSLLNSGKQQWNQ-----------IACEIRE 481
           E  +K ++  L  E +             + LL S     +            +  E+ E
Sbjct: 470 EADLKDQVKELEEELKDYNNLKAQYESTKEKLLASEANMEDLKQQVEALGAEEMIEELTE 529

Query: 482 VKEIF 486
               +
Sbjct: 530 KNMQY 534


>gi|195047003|ref|XP_001992252.1| GH24649 [Drosophila grimshawi]
 gi|193893093|gb|EDV91959.1| GH24649 [Drosophila grimshawi]
          Length = 1566

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAID-RRVEILKGLLIAYLNIDEIIA---IIRNEDKP 413
              +  E    + ++   +   +    +  ++ +            E +    +   E K 
Sbjct: 898  QDLNSECQELQSQLELEKQQVQRAQAEAEQLHLQLKEFNVKQLELEELKAKQLEMEELKA 957

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLR----KLEEYQIKS-ELDNLLAEKEKIDSLLNSG 468
            K + +      + Q++A+  ++L  L+    +LEE +IK  EL+ L  ++ +++ L    
Sbjct: 958  KQLEMEELKAKQLQLEAVRAMQLEELKLKQLELEELKIKQLELEKLKVKELELEELKAKQ 1017

Query: 469  KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP----ITVVI 524
             +     A ++ E     +  +D  +      E          + ++ ++     +  ++
Sbjct: 1018 LELEELKAKQL-ESDLKPATPSDESQVLLQEKEAEIVHLKQRIEELMREDQTEKLVVEIL 1076

Query: 525  SNRGWIRSLKSHS 537
            +    ++ L+  +
Sbjct: 1077 TKNQELQMLRMQN 1089


>gi|146184666|ref|XP_001029862.2| hypothetical protein TTHERM_01265040 [Tetrahymena thermophila]
 gi|146143057|gb|EAR82199.2| hypothetical protein TTHERM_01265040 [Tetrahymena thermophila SB210]
          Length = 1601

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 84/271 (30%), Gaps = 30/271 (11%)

Query: 232  IVESRESIVESYRLGRGGFRVRARWCVEE--VGRGSWCIVVTEIPYQVQKSR-----LIE 284
                +  +++S    +          ++E  +         T   YQV   +     LI+
Sbjct: 1108 NFSDKNGLMQSQLQSKEEIINSKEQEIKEYRIKNNHLQNFKTVYDYQVTSLQEERSPLID 1167

Query: 285  KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
             +  +    R+ + +++ DES    +I        ++    ++ +      +        
Sbjct: 1168 HLKNMEKNVRV-MYKELLDESEASKKINTKL----VENKEFIDQLKQQIKDKQDLLAITK 1222

Query: 345  VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR-----MQAIDRRVEILKGLLIAYLN 399
                     ++ +    K     ++     +  F         +++   I   L  +  +
Sbjct: 1223 RKIESFEYSILDMIKQEKYENWFQKMNKIYKEFFEGNVNLNNLMEKNTSIGSSLKDSPDD 1282

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY-----------QIK 448
                   + N D+ +  ++ +      ++  I   +L    +++              + 
Sbjct: 1283 EFLKQLNMNNSDQIREELIKQRDFMSKKIQTIS--KLNRQTEIDRDDVVIRVQNENTHLI 1340

Query: 449  SELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             E + L  EK+ +   L S ++  + I  E+
Sbjct: 1341 RECNTLREEKKNLKEHLGSLEKALDIITKEL 1371


>gi|49484751|ref|YP_041975.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257424027|ref|ZP_05600456.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426708|ref|ZP_05603110.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429343|ref|ZP_05605730.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257431991|ref|ZP_05608354.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434951|ref|ZP_05611002.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902458|ref|ZP_06310351.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906884|ref|ZP_06314732.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909857|ref|ZP_06317666.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912108|ref|ZP_06319904.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912738|ref|ZP_06320530.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282921125|ref|ZP_06328843.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           C427]
 gi|282922368|ref|ZP_06330058.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           C101]
 gi|283959319|ref|ZP_06376760.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497800|ref|ZP_06665654.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511383|ref|ZP_06670077.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           M809]
 gi|293549988|ref|ZP_06672660.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429127|ref|ZP_06821749.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589374|ref|ZP_06948015.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81827948|sp|Q6GDP8|FEOB_STAAR RecName: Full=Ferrous iron transport protein B
 gi|49242880|emb|CAG41609.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257273045|gb|EEV05147.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276339|gb|EEV07790.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279824|gb|EEV10411.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282870|gb|EEV13002.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285547|gb|EEV15663.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314589|gb|EFB44975.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           C101]
 gi|282315540|gb|EFB45924.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           C427]
 gi|282322838|gb|EFB53157.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323804|gb|EFB54120.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326431|gb|EFB56735.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329783|gb|EFB59304.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596917|gb|EFC01876.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus C160]
 gi|283788911|gb|EFC27738.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919035|gb|EFD96111.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096731|gb|EFE26989.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465341|gb|EFF07873.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           M809]
 gi|295126886|gb|EFG56530.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577885|gb|EFH96598.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437032|gb|ADQ76103.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195050|gb|EFU25438.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 664

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|308162186|gb|EFO64595.1| Hypothetical protein GLP15_2974 [Giardia lamblia P15]
          Length = 674

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 66/526 (12%), Positives = 152/526 (28%), Gaps = 63/526 (11%)

Query: 34  ALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQS 93
           A       ++ D  D    +   I  A++E       +F+    ++      +     Q+
Sbjct: 2   ATYDHIMSSLQDHIDSLTTLSANITQAVAENPTIPMDSFETEITLIETKFQAVQRAVTQA 61

Query: 94  VYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR--YTEARMTQVAELILQGVDEDA 151
           +  + +   +     Y  +       +I    A   +          + +L  + ++   
Sbjct: 62  LGGNSMNTDELCTLNYKYMECNKKLKDIRKFIAEHEKEGLLTTDQEDLKDLSPEDLNTGG 121

Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH---------NVQEICEA 202
            +    Y       +   +  PN LA   +G + G A  IP           +   I + 
Sbjct: 122 SEAMKPY---RQVHISAAAPVPNFLAPPVTGHSTGGALIIPPQTSPSITKLQSATSINKG 178

Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262
           +   +       +K    +  PD     +   S   +     L +     + +   EE+ 
Sbjct: 179 SHNSLLAVSNIADKGANVLFPPDGAEFSMHTSSPSGV-----LRKSSNPEQYKKHAEELN 233

Query: 263 RGSWCI---------------VVTEIPYQVQKSRLIEKIAELIIAKRIP---------LL 298
           RG   +                +TE    V         A L    + P         + 
Sbjct: 234 RGINKLRSNLIALNRAANEPETITEALTGVNLQD-----ARLARDNKKPVSGSESVAQIT 288

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
            ++R E+      +   K R+   +  + S+      +T+     +         +  + 
Sbjct: 289 ANLRRENISLKEELTTLKTRAKQQEDEIASLKKALSTQTKLSEKQSDDIDILQTSLDRVT 348

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
              +   A        R+   ++     +      L   L ++     +   +    +  
Sbjct: 349 EERQSLSA--TLKEKMRALGDLRKQLDTISDQNKELTELLEVERNNRNVAISELRAELS- 405

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                TEN     L  RL++L +L       EL+ + A+ E + +          Q+  +
Sbjct: 406 --HYKTENDT---LKSRLKTLDELNVEGNVLELERVTADIEDMQT-------MVKQLKKQ 453

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
             ++   F++  +L +      E   A      +         V++
Sbjct: 454 KADMANKFAREKELLQENIDVLEAQLASGYLDSEKGAPSHAEIVML 499


>gi|94995090|ref|YP_603188.1| surface protein [Streptococcus pyogenes MGAS10750]
 gi|94548598|gb|ABF38644.1| Putative surface protein [Streptococcus pyogenes MGAS10750]
          Length = 783

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 79/285 (27%), Gaps = 20/285 (7%)

Query: 218 LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277
            ++I        G  V  +                + +  +       + I         
Sbjct: 232 FKFIPNGLSYENGEFVFDKNVDSVELEFDYNNDMYQGKMTIY--NPNKYSIDTQTDLTGQ 289

Query: 278 QKSRLIEKIAELIIAKRI--PLLEDIRDESAEDVRIVLFPKNRSL---DPDLLMESIFML 332
                  KI +L    +     ++D+ D+  ED   +   K +     D    ++     
Sbjct: 290 DIDEKDNKIDDLTKNIKDLENQIKDLNDKKQEDQSKIDELKEKLESCKDNGEKLKQEKAK 349

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
            + E R   N        +  +   +         + +   +R     + +       K 
Sbjct: 350 LEEEIRNKDNKIAQLNKEIEDLKNSNNDELIAEITQLKDELKRLQDENEKLKEDYSSTKW 409

Query: 393 LLIA-----------YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            L A              + E +  +  E   K   +         ++  L+ +   ++ 
Sbjct: 410 ELEAEKEKTDKNENKIKEMQEKLESLEGELAKKTKEIGDKDNRIKDLEKALDEKDTKIKD 469

Query: 442 LEEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           LE  + ++E        + E++   ++S K+       E+ E  +
Sbjct: 470 LESKKKETENSKSECFKKIEELQKAIDSLKESSENTKKELEEKIK 514


>gi|317009086|gb|ADU79666.1| type I restriction enzyme R protein (hsdR) [Helicobacter pylori
           India7]
          Length = 1044

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 92/288 (31%), Gaps = 34/288 (11%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLL 298
            SY     G+ +      E   + +   +     +    S L + + ++   ++     +
Sbjct: 687 RSYNNMSFGYLIDFVGIKENYDKTTDDYLKELNQFNQSDSNLKDNLKDMFADRKTLEKDI 746

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           ++  D+  +     +     ++     M  +  +S          N++      +++ L 
Sbjct: 747 KNAYDDLFDYPIDDIEAMTSAIVSISAMNELLKVSHAINTLKERYNLIRTSSDEKILSLK 806

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
                          +    ++  I   +      L A  NI+E                
Sbjct: 807 E--------------KMDIEKISKISSMLNKKAKQLYALKNINEPKN------------- 839

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
               +    + A+L+ ++    K  +     E + +  ++++   +L     Q +    E
Sbjct: 840 PNDLIILEDLIALLDFKIE--FKERKELRFKEQEEITTKQKQAKEILEKIPDQQD---KE 894

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
           I++  + FSK          F E+S +  A + Q    KE  T ++S 
Sbjct: 895 IQKFYKDFSKLLQTPATSQNFEEISHSYDAIISQLKQNKEQTTNLLSK 942


>gi|254438896|ref|ZP_05052390.1| amino acid or sugar ABC transport system, permease protein,
           putative [Octadecabacter antarcticus 307]
 gi|198254342|gb|EDY78656.1| amino acid or sugar ABC transport system, permease protein,
           putative [Octadecabacter antarcticus 307]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622
           +L++ +  +    P   L   RG  +   +L D++ +   +   +      L +    G 
Sbjct: 114 MLIIRSAVQVIWGP-NQLTFVRGIAKPNPVLRDMSSD---IGMMLIIPNKHLFIF--AGT 167

Query: 623 AFIV-EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV---------AVVGENRKLLI 672
             IV   S ++  TR GK    VS    +  V  +  D V                  L+
Sbjct: 168 VIIVFALSYLLNRTRIGKAMRAVSDSPDLAHVTGIDVDKVIRATWIVGGICATAAGVFLV 227

Query: 673 FSI 675
             +
Sbjct: 228 MDV 230


>gi|15320861|ref|NP_203371.1| CUN067 hypothetical protein [Culex nigripalpus NPV]
 gi|15278323|gb|AAK94145.1|AF403738_67 CUN067 hypothetical protein [Culex nigripalpus NPV]
          Length = 1357

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 118/358 (32%), Gaps = 30/358 (8%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E +AE    ++   + +    + E+ + +        + + +  ++  L   E R  +  
Sbjct: 149 EIVAEA--ERKAAEIMNQTRRTNEESKRLAEQVK--AEEESVRRNLAKLERFEERL-MAF 203

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
            V        V+  +   K     R+ +L    S+R +  ++  ++ +       N  E 
Sbjct: 204 KVERKNFNASVLRYEQDRKALEVERQALLKAEESYRER--EKGFKVREMKFALAGNWSEK 261

Query: 404 IAIIRNEDKP-KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
           + +    D     +  S  +L + ++  +  ++     K +  +   E   L  E EK+ 
Sbjct: 262 VPVENQLDNIMNQIKSSYAALKDERLKFVKQMKESQQFKEDAIRSNEETKILKGEIEKLY 321

Query: 463 SLLN--SGKQQWNQIACEIREVKEIFSK-STDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           +LL   +  +    I   I   K I +  +      R T    +R       + + +K  
Sbjct: 322 TLLRNCNVNEIETLIKNSIIRAKSIQADFAKQNLTTRETNLANARLALEKSSEDLQKKI- 380

Query: 520 ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579
                 N       +   +  +    K    + +   A  +++I    +  + Y++    
Sbjct: 381 ------NSYRAMEAERDQLQNAIELLKAQHQVLLVTCATVSEQIEQQRSSARVYSID--- 431

Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637
             S     E            D    F+ +   K+ V+ ++ +      ++  A  R+
Sbjct: 432 -QSAASVSEP--------KRADESGVFMGEDNEKMFVLVNQSDVKKNLSADASAIRRR 480


>gi|320164713|gb|EFW41612.1| chromodomain protein [Capsaspora owczarzaki ATCC 30864]
          Length = 273

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 85  KLHPHGDQSVYDSLVRL----AQPFVQRYPLISGQGNFGNIDGDSAA-AYRYTEARMTQV 139
           K +   D  +YD++VR     AQ       ++SG G + +   D A+   +Y EA     
Sbjct: 31  KKYNAIDGPLYDNIVRALDYAAQTDGVNIVVLSGNGKYFSSGNDLASMNQQYAEAAENPD 90

Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195
               +                  S+  +    FP +L    +G AVG+  +I  H 
Sbjct: 91  GPQAMLDASR----------NRFSKFAIRFITFPKILVLALNGPAVGIGATIIPHA 136


>gi|146423067|ref|XP_001487466.1| hypothetical protein PGUG_00843 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 485

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 17/210 (8%)

Query: 275 YQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVRI---VLFPKNRSLDPDLLMES 328
           Y+ +K RLIEK+ +   LI+  +   ++ ++     D  I   V+     +L+      S
Sbjct: 252 YRDEKGRLIEKLEDQHYLILEAKKD-IDKLKSYMHTDFDILNKVIEDLRSNLNEYQQAAS 310

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA--HRREVLFRRSSFRMQAIDRR 386
                +      +    +    +  +  +   +   LA  +R      +    ++   + 
Sbjct: 311 SQEQRNRNINISIEAFQIIEQNIKNLFKILEEVSNDLARQNRIAEELNKHQDMLEEKKQE 370

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL--EE 444
                  ++A         I  NE+K + +       TE Q      LR +   KL  + 
Sbjct: 371 SHEYGRQILALQ-----RKINVNEEKTQKLREGFNRETERQQQETATLR-QEYEKLSQDR 424

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              + EL+    E  + + ++NS K ++N 
Sbjct: 425 ATKEEELERTRKEINRYEHMINSEKNEFNI 454


>gi|15668518|ref|NP_247316.1| hypothetical protein MJ_0343 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495914|sp|Q57789|Y343_METJA RecName: Full=Uncharacterized protein MJ0343
 gi|1591057|gb|AAB98333.1| hypothetical protein MJ_0343 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 849

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             R++   ++ I  ++EI   +      +DE+  +    +    + +    L E + DA 
Sbjct: 21  DVRKNLKSLEKIKSKLEIESNINAVIKQLDELKNVKSEVEFKSNINMIIRELEEIEADA- 79

Query: 432 LNLRL---RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             + +     L KL     KSEL+ L   K  I +  +   +Q N+I  E+ E + I +K
Sbjct: 80  SKMNINFDYDLSKL-----KSELEQLKNTKIDIKTNTDQILKQINKIKSELSEKQTIRAK 134

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISN 526
                        E S          +       + IS+
Sbjct: 135 VEVDRTEWDKLKKEWSEKYHINAIADVASVGTAYMGISD 173


>gi|307177455|gb|EFN66582.1| Condensin complex subunit 3 [Camponotus floridanus]
          Length = 907

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 87/266 (32%), Gaps = 12/266 (4%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
               L+E++  +    R+  L +I +E+    + V+         + L   I  LS   T
Sbjct: 305 NLKNLLEQV-PIDKDTRLIPLTNISNENVLFWKCVIKHLQYHSYTEELELIIPELSGFCT 363

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR-EVLFRRSSFRMQAIDRRVEILKGLLIA 396
                M ++S              KE       ++    +++ +     R ++ + ++ A
Sbjct: 364 YIYDYMTLISSKSYEVWE------KECHKFILLQLFEISTTYDLADEVGRKKLNELMVDA 417

Query: 397 YLNIDEIIAII-RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD-NL 454
            ++      II    +    V+    ++     + I  +RL S   L+  Q+  E     
Sbjct: 418 LMSDHCYDKIIECTVNHLAKVIPDTNNMLNIIANIISEIRLPSCENLDTEQVTVEQQQEK 477

Query: 455 LAEKEKID-SLLNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
             +K ++   +L   ++ +  +  E   E   I  K   L    T   ++         +
Sbjct: 478 NMQKARLKVDILELEEELYQAVKEENFLEADSIKEKIKVLKEEITQLSKIPEVVIVDDMR 537

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSV 538
                    +   N  +      H++
Sbjct: 538 EEKNDSITMIKCLNILYFAMQSIHTL 563


>gi|198463192|ref|XP_001352726.2| GA10399 [Drosophila pseudoobscura pseudoobscura]
 gi|198151152|gb|EAL30226.2| GA10399 [Drosophila pseudoobscura pseudoobscura]
          Length = 658

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 225 RRWIEKENKAARIKRKKEEMSRIRDLVNLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAVQ 284

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    + + E  +  E  +  AE+++I+ +    +QQ   +  E + +++   
Sbjct: 285 AQ-----KAEQEKAVREAALAKERAD-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKVK 338

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 339 DCKYYAKN 346


>gi|82594690|ref|XP_725532.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480572|gb|EAA17097.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1647

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 18/228 (7%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351
            +R+ +L++   E    ++  +       + + + +      + + +       L     
Sbjct: 198 DRRLDVLKNELSEKDNYLKKKIRECENEAN-NKITDHENKYLNEKKKNDELTTSLENATK 256

Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
            +   +     E  +H++E    ++    +      E  K     Y N  E        +
Sbjct: 257 EKEDIIKQYTCEISSHKKEQENYKN--EAEKYKNEAEKYKNEAEKYKN--EAEKYKNEAE 312

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
           K K  M  R    E   D             E  + K E +    E EK    +N   Q+
Sbjct: 313 KYKNEMEKRKYEAEKWKD-------------EAEKWKDEAEKWKDEAEKWKDEMNQRVQK 359

Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            N+I  EI+ ++ I ++      +  T  E S  D   L   + +K  
Sbjct: 360 MNEINDEIKRIENILTEEKKTNEKLQTIIENSEKDITNLNNIINQKNE 407


>gi|253742035|gb|EES98889.1| Hypothetical protein GL50581_3867 [Giardia intestinalis ATCC 50581]
          Length = 671

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 70/505 (13%), Positives = 153/505 (30%), Gaps = 37/505 (7%)

Query: 42  AIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
           ++ D  D    +   I HA++E       +F+    ++      +     Q++  + +  
Sbjct: 10  SLQDHIDSIAALSANITHAVAENPKLPMDSFEAEVALIETKFQGVQRAVTQALGGNSMNT 69

Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYR--YTEARMTQVAELILQGVDEDAVDFRDTYN 159
            +     Y  +   G   +I    A   +  +      ++ +L  + ++    +    Y 
Sbjct: 70  DELCALNYKYMECNGKLKDIRKFIAEHEKEGFLAGDREELKDLSPEDLNTGGTESTKPY- 128

Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH--------NVQEICEAALALIDNPE 211
                 +   +  PN LA   +G++   A  IP          +     + A        
Sbjct: 129 --RQVHISAAAPVPNFLAPPATGLSGAGALVIPPQTSPSITKLHTASTTKGAHNSFLVVS 186

Query: 212 ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
              EK   ++   D     I   S    V         ++  A    E++ RG   +   
Sbjct: 187 NVGEKGDAFLHPTDGSELNIRTSSPSGGVLRKSSNPDQYKRHA----EDLNRGINKLRSN 242

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE------SAEDVRIVLFPKNRSLDPDLL 325
            I      +   E I E +    +      RD       S    +I    +  ++     
Sbjct: 243 LIALNR-AANEPETITEALTGVNLQDARIARDNKRPVSGSESVAQITANLRRENISLKEE 301

Query: 326 MESIF---MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           + S+       + E           +    +      IL+  L    E     S+   + 
Sbjct: 302 LTSLKTRAKQQEDEIASLKKTLSAQVKLSEKQSDDIDILQCSLDRVTEERQSLSATLKEK 361

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA---ILNLRLRSL 439
           +    ++ K L        E+  ++  E   + V +S      +   A    L  RL++L
Sbjct: 362 MRALGDLRKQLDTISDQNKELTELLEVERNDRNVAISELRAELHHYKAENETLKSRLKAL 421

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +L       EL+ + A+ E + +          Q+  +  ++   F++  +L +     
Sbjct: 422 DELNVEGNVLELERVTADIEDMQT-------MVKQLKKQKADMANRFAREKELLQENIDV 474

Query: 500 CEVSRADKATLQQAMIEKEPITVVI 524
            E   A      +         V++
Sbjct: 475 LEAQLASGYLESEKGTPSYAEIVML 499


>gi|221060022|ref|XP_002260656.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
 gi|193810730|emb|CAQ42628.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
          Length = 1732

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 368  RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
            R ++   R   +M     ++E  +  +       E  A+I+     K    +   + E +
Sbjct: 911  REQLKMEREQLKMDKEQLKIETEQLRMETEERRLEKDALIKELGDTKAKYFNLTGILEGE 970

Query: 428  VDAILNLRLRSLRKLEEYQIKSE----LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             + + + +++ L K +   +  E    ++ +  E +    +LN  + +  Q+  +++E++
Sbjct: 971  -EKMYSQKVKELEK-KIENLTEEKNTLINEIKNEIDNFTKMLNDKEIENAQMKEKLKELR 1028

Query: 484  ---EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               E +  +           E S  +   + + MI+KE 
Sbjct: 1029 NVEEKYKDTQINFDSLKKEFERSFDEVQIILKEMIQKEK 1067


>gi|296238768|ref|XP_002764298.1| PREDICTED: hypothetical protein LOC100405620, partial [Callithrix
           jacchus]
          Length = 446

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                   + R +  K L +A    + +   +  E   K   V    +  ++  ++  L+
Sbjct: 14  EERDRAEAEAREKETKALSLARALKEAMEQKVEPERLNKQFRVEMEDIMSSKGKSVHELK 73

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            R L       ++ +++ L  + E+++  L   +    ++   ++ +K  F +       
Sbjct: 74  SRRL-------LEQQVEELKTQLEELEDELQDTENANLRLEVNLQAMKIQFERDLLGRDE 126

Query: 496 RTTFCEVSRADKATLQQAMIEKE 518
           ++   +     +    +A +E E
Sbjct: 127 QSEEKQQQLVRQVREMEAELEDE 149


>gi|145525703|ref|XP_001448668.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416223|emb|CAK81271.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1171

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 20/242 (8%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP--- 340
           +KI ELI +  I  ++ ++D +  +    LF  N+          I   SD +       
Sbjct: 223 QKIDELIESMFIISMKQVKDATEHENTSPLFVFNKDAVLSRFHSIINDRSDPQISINDLY 282

Query: 341 --LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                  +   R+      D I KE      E     ++ + +   +R E+ K L+    
Sbjct: 283 YISKTVCMRDRRIIYNEFYDQINKELKEIAPEYFQFATTEKSEYQKKREELHKKLIKTQS 342

Query: 399 NI-----DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
           +      DEI  +I  +   + V+      +E Q+      +L++L        K + D 
Sbjct: 343 DWESLKEDEIYYLILEDRINEEVLRKVPLTSERQLQ-----QLQNLSAFANKSSKLQSDA 397

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK-STDLGRRRTTFCEVSRADKATLQQ 512
           +      +  +L+   +    I  +++E  +   +  T +   RT      +    +L  
Sbjct: 398 VTL----LKEILDHKDESKVYIETKLQEALDKAKQYYTKMTPGRTPSSNQIKQYVDSLYS 453

Query: 513 AM 514
            +
Sbjct: 454 EL 455


>gi|296411052|ref|XP_002835249.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295628024|emb|CAZ79370.1| unnamed protein product [Tuber melanosporum]
          Length = 2201

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 86/246 (34%), Gaps = 22/246 (8%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           + IA   + ++I      R E+       +  +N  +  DL     + L        +  
Sbjct: 692 QSIARGYLQRKIASKRLYRAEATM-----IIQRNLQVYLDLCESPWWKL-----FMKMKP 741

Query: 344 NVLSMGRVPQVMPLDGILKEWLAH---------RREVLFRRSSFRMQAIDRRVEILKGLL 394
            + +     +V   D ++++  AH         R E   R++   +  + + +E  + L 
Sbjct: 742 LLGATHSSSEVKKRDEMIQKMEAHMQAEAENRQRLEEERRKADAELHKVQKTLESERALA 801

Query: 395 IAYLNIDEIIAIIRNEDKPK-PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
           +    I + +     E   K    +    + E+Q+D +  +  +     +    + EL+ 
Sbjct: 802 LDKEEIFKRMQQREAELSEKLAGALDDQDVLEDQIDEL--MSAKKKADEQAEAWRKELEQ 859

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                 K++   +    +   +  E+   ++  ++  D   R      + ++  A  ++ 
Sbjct: 860 AGDLIAKLEDEKHEMAARLEFLDRELEAAEKQRAERGDAEDRLEQEVHLLKSHLALKERK 919

Query: 514 MIEKEP 519
           + + E 
Sbjct: 920 IHDYEE 925


>gi|156838994|ref|XP_001643193.1| hypothetical protein Kpol_1011p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113792|gb|EDO15335.1| hypothetical protein Kpol_1011p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1221

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 101/281 (35%), Gaps = 31/281 (11%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESA--------EDVRIVLFPKNRSLDPDLLME 327
            V K +L+ +I EL  + +   ++    ES           +R      NR+L+ + + E
Sbjct: 682 TVLKDKLLSQIEELSTSSKSFAIKGRDLESTISLLNTDITSLRSEFTQLNRALEENKV-E 740

Query: 328 SIFMLSDMETRFPLNMNVLSMG------RVPQVMPLDGILK--EWLAHRREVLFRRSSFR 379
             +    ++  F   ++ L+         + Q       L+   +      + F    + 
Sbjct: 741 IQYQTDMIDKEFGPKLDALNDKIKVYDEEISQFENKKEDLQGEIFKEFTNRLGFTIKEYE 800

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             + + R +  K L      I  I   ++ E +       R    + Q +      L+  
Sbjct: 801 EHSGEIRRKQAKELQQLQRQILNIENKLQFEQERLASTEKR--FEKGQSE------LQK- 851

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            K+    +++E   L  + E+ID+ L + + + +++   +    +  S   D     +  
Sbjct: 852 TKISLDSLETEESELQTQIEEIDNELETQRTEIDEMQKALDSKLKDISFIEDSLNEVSNS 911

Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
            E+S+ +K      + +     V +   G  ++ K   ++L
Sbjct: 912 LEISKREKLGFNDDIEK-----VDLEKIGIYKNCKISGIEL 947


>gi|195574362|ref|XP_002105158.1| GD18075 [Drosophila simulans]
 gi|194201085|gb|EDX14661.1| GD18075 [Drosophila simulans]
          Length = 1220

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 72/209 (34%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+++ +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDTLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LIARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDDLLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|123507460|ref|XP_001329419.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121912374|gb|EAY17196.1| hypothetical protein TVAG_291480 [Trichomonas vaginalis G3]
          Length = 999

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 97/307 (31%), Gaps = 35/307 (11%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296
           +   +  R          +   EE  +      + +  YQ    RL  ++A+     +  
Sbjct: 619 DEKEQLKRDWTTKLENLRKQFAEEEKQNEDARRMKKEDYQKTLDRLKIELADA-EEFKTK 677

Query: 297 LLEDIRDESAEDVRIVLFPKNR------SLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            L  IR E+ E+ +       +       +  +       +   +          L+   
Sbjct: 678 ELARIRKETEEETKRGEAELKKLQLEMNKISAEKGAAIKELEGKISKFDGETQKKLNEVE 737

Query: 351 VPQVMPLDGILKE----------------------WLAHRREVLFRRSSFRMQAIDRRVE 388
             +   +D + +E                         H+R++   +  +    ID + E
Sbjct: 738 QRRKKEVDALTEELKQIRQNGKREVEELNQALLNSSHEHQRKLFEMKMMYEQAQIDAQFE 797

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           + +        + E+    ++E +   ++       +NQ D I       + +L+E   K
Sbjct: 798 LQEFERQQNAELAELQNQQQHELE---LLNIELQQIQNQTDYIRQQHHERMTQLQEDHKK 854

Query: 449 SELDNLLAEKEKIDSLLNSGKQQ---WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
              +     +++ ++L   GK+      +I  ++ +  + + +       R    E  + 
Sbjct: 855 RMSEQSAEFEKRKEALEGEGKRLIAAKEKIVQDLEQSVKEWEEKLKFKDARPEDLEHIQR 914

Query: 506 DKATLQQ 512
            +  +Q+
Sbjct: 915 LEEIVQE 921


>gi|82752132|ref|YP_417873.1| ferrous iron transport protein B [Staphylococcus aureus RF122]
 gi|82657663|emb|CAI82112.1| ferrous iron transport protein B [Staphylococcus aureus RF122]
          Length = 664

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|326925045|ref|XP_003208732.1| PREDICTED: formin-binding protein 1-like [Meleagris gallopavo]
          Length = 693

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 78/265 (29%), Gaps = 39/265 (14%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +EK A+ +  +    +E    +   ++     PK  S D +    +++    
Sbjct: 104 HTQWGIDFLEKYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEPRRAAVY---- 157

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG-- 392
                  +  V+ +  +        ++ E + HR      R S  +   +R++ + +G  
Sbjct: 158 -------HWAVIFLSILNDYAGQREVVAEEMGHRVYGELMRYSHDL-KTERKMHLQEGRK 209

Query: 393 ----LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKL 442
               L + +  +D           E +       R     N   A +    + L     +
Sbjct: 210 AQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKADVEKAKQQLNLRTHM 269

Query: 443 EEYQIKSELDNLLAEKEK--------IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +         L     +        I  +    ++   +   ++ E  + F+       
Sbjct: 270 ADENKNEYAAQLQNFNGEQHKHYYIVIPQIYKQLQEMDERRTIKLSECYKGFAD-----S 324

Query: 495 RRTTFCEVSRADKATLQQAMIEKEP 519
            R     +S+  +  +  A    E 
Sbjct: 325 ERKVIPIISKCLEGMILAAKSVDEH 349


>gi|194907333|ref|XP_001981533.1| GG12110 [Drosophila erecta]
 gi|190656171|gb|EDV53403.1| GG12110 [Drosophila erecta]
          Length = 1265

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 72/209 (34%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+S+ +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDSLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LVARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|149463327|ref|XP_001520366.1| PREDICTED: similar to chromosome 6 open reading frame 152
           [Ornithorhynchus anatinus]
          Length = 909

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAY--LNIDEIIAIIRNEDKPKPVMVS-RFSLTE 425
                +R  +R +    R E  +  +      + DE+ A+     K +    +    + E
Sbjct: 252 ENRALKRLQYRQEKALNRFEDTENEISQLLARHGDEVKALREQLRKSQEKERATERRVRE 311

Query: 426 NQVDAILNLR--LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              + +   R  LR L+KL E +   E D L  +    ++ L   +++  ++A  +    
Sbjct: 312 ADCE-LYRTRRALRKLKKLAEARHLPERDRLATKLSAAEARLEDTERRIKEMAKNLELSN 370

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             F +     +++T   +          Q + +K
Sbjct: 371 SSFQRQLHSEKKKTQSAQEENEALKLELQRLNQK 404


>gi|312084178|ref|XP_003144169.1| hypothetical protein LOAG_08593 [Loa loa]
 gi|307760668|gb|EFO19902.1| hypothetical protein LOAG_08593 [Loa loa]
          Length = 849

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 89/260 (34%), Gaps = 29/260 (11%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           EK   L I++   L+ + + +   +V  ++   N ++     +     +SD +    L  
Sbjct: 154 EKSDALKISELEHLMAEQKTKYESEVAALIIAHNETVAELKFLNQEGRISDAQKNLFLTQ 213

Query: 344 NVLSMGRVPQVMPLDGILK-EWLAHRREVLFRRSSFRMQAI---DRRVEILKG------- 392
           N       P       IL+ E    +  +L       ++ I       EI +        
Sbjct: 214 NANEKAEDPGCCTEQHILENETNKKQIHLLTEERDLLLEKIKSMQEENEIQEDQVDKLTF 273

Query: 393 ---------LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-----AILNLRLRS 438
                     L       E +    +  + K +      +++ Q +      +++++   
Sbjct: 274 QAVDKVLSERLNELEQQREDLQKQLDTAEAK-ITEKTSHISQLQAEVREVHHLIDMQREK 332

Query: 439 L---RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
                 +E  + +++++ L  E   +  L+NS ++       ++ E  E  SK     ++
Sbjct: 333 FETETTVERERSRAKIEELQNELANLQLLMNSREEDRVNEKSKMTETIEKLSKQIATWQK 392

Query: 496 RTTFCEVSRADKATLQQAMI 515
           R    E    ++A L + + 
Sbjct: 393 RAEVLETKSKEQAILDRELE 412


>gi|212544726|ref|XP_002152517.1| GDP/GTP exchange factor Sec2p, putative [Penicillium marneffei ATCC
           18224]
 gi|210065486|gb|EEA19580.1| GDP/GTP exchange factor Sec2p, putative [Penicillium marneffei ATCC
           18224]
          Length = 696

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 10/163 (6%)

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
              +  +     LD  L        E   R      +    R EI  G++I   +++  I
Sbjct: 112 AKLVQAINNQTNLDDSLSATRQELEEAEERLLEVESENEKYRAEISSGIMIKRSDVEAEI 171

Query: 405 ---AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR-------KLEEYQIKSELDNL 454
                + +E++ K  +  +      Q    L   L           K E   I+ + + L
Sbjct: 172 LSMKQMLDEERAKRTVAEKEKREMEQELETLTAALFEEANKMVAAAKQEREAIEKKNEQL 231

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            A+ +  ++L+ S ++Q  ++   I+E+      +       T
Sbjct: 232 RAQIKDTEALVASQEEQLAELKAVIQEMNSARDDNDTTPNPST 274


>gi|116179482|ref|XP_001219590.1| hypothetical protein CHGG_00369 [Chaetomium globosum CBS 148.51]
 gi|88184666|gb|EAQ92134.1| hypothetical protein CHGG_00369 [Chaetomium globosum CBS 148.51]
          Length = 1240

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE---IFSKSTDL 492
           LR   + E   ++ E D   AE E++   LN   + ++ +  E+R++ E         + 
Sbjct: 805 LRKEAQEEIDALEGEADQRTAEIERLQLDLNDRTESFDSLQAEMRKMSEGLVRLEDEQEA 864

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK 517
             RR    E    D     + +  K
Sbjct: 865 KLRRVQQLEQELGDANKDLEDLEAK 889


>gi|298711777|emb|CBJ32807.1| hypothetical protein Esi_0376_0006 [Ectocarpus siliculosus]
          Length = 1225

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-----KPKPVMVSRF 421
            H   +   R   R                A  + +E+   +  E      + +  + +R 
Sbjct: 1108 HEAALQKERQHRREWEARSDEHARDKREQAKQHREEMRRQVAAERKRAEGEARKKLEARH 1167

Query: 422  SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
               + + + ++ ++L+ ++     ++  E D L  E  ++   L 
Sbjct: 1168 KEAQQKAEEVVKMQLKMIK-----EMDQENDELREENAELREKLG 1207


>gi|118572315|sp|Q2HWF0|FBP1L_RAT RecName: Full=Formin-binding protein 1-like; AltName:
           Full=Transducer of Cdc42-dependent actin assembly
           protein 1; Short=Toca-1
          Length = 605

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|326676757|ref|XP_685984.5| PREDICTED: hypothetical protein LOC557772 [Danio rerio]
          Length = 11537

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 88/238 (36%), Gaps = 5/238 (2%)

Query: 285   KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
             +I+E  +       E+ R+E+      +      + +   L+E      D + +      
Sbjct: 10206 EISEADLKVMKEQCENAREETERKKCDIEEQIQNNENAKHLLEQERKDIDKQKQELQKQA 10265

Query: 345   VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
                  R+        + K  L   +++L ++++  ++  D   +  + ++  +  +D + 
Sbjct: 10266 DDLDMRMIAHRENVEMSKRSLDEEKKLLEQKANEILRQRDDLEKEKEDMMKKWNKLDVLQ 10325

Query: 405   AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ-----IKSELDNLLAEKE 459
               ++NE+K    +        N+++        SLR + E +     ++++ +    + E
Sbjct: 10326 NEMQNENKAMEEIKYELDGKRNEINKEQQRLEESLRAINEEKGDLEIMRADYEKQEQQIE 10385

Query: 460   KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
             ++       +++ +QI  E+ + K                 E  R D   ++  ++ +
Sbjct: 10386 EMRVEAKMERKELDQIKSELEKDKTEIDYEWKKLNNDRNMIEKERNDLEKMKSELMTQ 10443



 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 85/251 (33%), Gaps = 11/251 (4%)

Query: 278  QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
                ++EK    +   R  L +   D   +    +   +    D + + E+I        
Sbjct: 6094 SDKDMLEKERHNLEKTRSELYKVKEDLEKQKENTLAEIQKEREDVEKMNENITREMHEIK 6153

Query: 338  RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV------EILK 391
                 MN            +  + +E    +  ++  RS F ++  +         +I++
Sbjct: 6154 HQEEQMNQKQDELDQLKTEIQNLQQELEKEKEIIMKDRSQFDLRQSELDKQQTNMNDIME 6213

Query: 392  GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY-----Q 446
             +      +D+    +  + +        F  +   +D  L +     +  EE      Q
Sbjct: 6214 TMKNERKQLDKDKEEMEEQKQEMEKEKHDFDQSRKSLDKDLKMMKLQKQVFEEEKNKLEQ 6273

Query: 447  IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
            +K EL+    E  KI     + +Q   ++  E+++ KE F+   +  ++     +  +  
Sbjct: 6274 MKIELEREADEIRKIKEETQNERQSLEKMTEELKKEKESFTHLAEDTKKEQEILDKVKVA 6333

Query: 507  KATLQQAMIEK 517
              +L   + ++
Sbjct: 6334 NESLMADLQKE 6344



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 98/285 (34%), Gaps = 10/285 (3%)

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
            R G G  RVR +  ++E+ +     VV E+     + ++IE   + I   +  L ++  D
Sbjct: 2966 REGIGKTRVRIKKEMDELKQTRLN-VVKELENNELQKQIIEDERDKIEQIKAELQKEAED 3024

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
               E  R  +    R+ +  ++           +   +     ++    Q +  D    E
Sbjct: 3025 --TEKQRRDIEKDRRNNEEMVIKLQNEKKDIETSTDRIRDEEANLEVQKQRLESDRDTLE 3082

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA--IIRNEDKPKPVMVSRF 421
                  E          + ++ ++   +  L+      EI+    I    + + +   R 
Sbjct: 3083 KERFDLEKTKTEMGNLKKQLESQIRQHEIQLVEIQKEREILEQLKINLSKQKEDLEKERD 3142

Query: 422  SLTENQVDAILNLRLRSLRKLE-----EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
               + + D  L+  L+   + E       +IK E+D L   ++ +     + + Q   I 
Sbjct: 3143 CFEKEKADISLSEDLKEQSEREGIDNTRTRIKQEMDELEKTRQNLAKEQENNELQKKIIE 3202

Query: 477  CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
             E  ++++I ++      +     +  R +       + +     
Sbjct: 3203 DERDKIEQIKAELKKEAEKTKLELQNERQNLEEAGTKLKKDRENV 3247


>gi|195169542|ref|XP_002025580.1| GL20759 [Drosophila persimilis]
 gi|194109073|gb|EDW31116.1| GL20759 [Drosophila persimilis]
          Length = 658

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 225 RRWIEKENKAARIKRKKEEMSRIRDLVNLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAVQ 284

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    + + E  +  E  +  AE+++I+ +    +QQ   +  E + +++   
Sbjct: 285 AQ-----KAEQEKAVREAALAKERAD-KAEQKRIEQIRIEREQQKKVLKKERKTLRDKVK 338

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 339 DCKYYAKN 346


>gi|73960033|ref|XP_537067.2| PREDICTED: similar to formin binding protein 1-like isoform 2
           [Canis familiaris]
          Length = 617

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 34  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 85

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 86  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 137

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 138 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 174


>gi|88853835|ref|NP_001034698.1| formin-binding protein 1-like [Rattus norvegicus]
 gi|87299584|dbj|BAE79635.1| Cdc42 effector, long isoform [Rattus norvegicus]
          Length = 609

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|221126210|ref|XP_002159073.1| PREDICTED: similar to F17B5.1a, partial [Hydra magnipapillata]
          Length = 384

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 8/235 (3%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             +    +E+  +      +     Q  +  L E  A+    K++ +  + ++++ + + 
Sbjct: 130 ENKMLLEIEDNKKQKEADELKIKEMQ--EQSLQEDAAKREKEKQLEIQLNQQEKNKKLLE 187

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
           I    K +  D   + E    L   E         L +    Q      +  E    +RE
Sbjct: 188 IEENEKQQEADEFKIKEMQEQLLQEEAARKEKEKQLEIQLNQQEENKKLLEIEENEKQRE 247

Query: 371 VL----FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
           V            +Q    R E  K L I     +E   ++  ED  K        + E 
Sbjct: 248 VDELKIKEMQEQLLQEEADRREKEKQLEIQLYQQEENKMLLEIEDNKKQKEADELKIKEM 307

Query: 427 QVDAILNLRLRSLR--KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
           Q   +     R  +  +LE    + E +  L E E+ +   +  + +  ++  ++
Sbjct: 308 QEQLLQEEAARREKEKQLEIQLNQQEENKKLLEIEENEKQQDVDELKIKEMQEQL 362



 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 14/303 (4%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-R 318
           E+        V E+  +  + +L ++ A     ++   ++  + E  + +  +   K  +
Sbjct: 85  EIKENEKQREVDELKIKEMQEQLHQEEAARREKEKQLEIQLYQQEENKMLLEIEDNKKQK 144

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL----FR 374
             D   + E        +         L +    Q      +  E    ++E        
Sbjct: 145 EADELKIKEMQEQSLQEDAAKREKEKQLEIQLNQQEKNKKLLEIEENEKQQEADEFKIKE 204

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                +Q    R E  K L I     +E   ++  E+  K   V    + E Q   +   
Sbjct: 205 MQEQLLQEEAARKEKEKQLEIQLNQQEENKKLLEIEENEKQREVDELKIKEMQEQLLQEE 264

Query: 435 RLRSLR--KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
             R  +  +LE    + E + +L E E         K+Q      +I+E++E   +    
Sbjct: 265 ADRREKEKQLEIQLYQQEENKMLLEIE-------DNKKQKEADELKIKEMQEQLLQEEAA 317

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552
            R +    E+    +   ++ +  +E       +   I+ ++       A   ++   L+
Sbjct: 318 RREKEKQLEIQLNQQEENKKLLEIEENEKQQDVDELKIKEMQEQLHQEEAARREKEKQLE 377

Query: 553 IAL 555
           I L
Sbjct: 378 IQL 380


>gi|327342918|dbj|BAK09292.1| DNA gyrase subunit A [Streptococcus anginosus SK52]
          Length = 79

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKG- 59

Query: 697 ISDVICFK 704
            + ++ F 
Sbjct: 60  -AQIVTFT 66


>gi|311254772|ref|XP_001928581.2| PREDICTED: formin binding protein 1-like [Sus scrofa]
          Length = 609

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECKEAEKAQQSYERL 157


>gi|296208558|ref|XP_002751159.1| PREDICTED: formin-binding protein 1-like [Callithrix jacchus]
          Length = 605

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|297279278|ref|XP_001102990.2| PREDICTED: formin-binding protein 1-like isoform 1 [Macaca mulatta]
          Length = 605

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|284037434|ref|YP_003387364.1| hypothetical protein Slin_2547 [Spirosoma linguale DSM 74]
 gi|283816727|gb|ADB38565.1| hypothetical protein Slin_2547 [Spirosoma linguale DSM 74]
          Length = 905

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 25/127 (19%)

Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
              R  G A+     L   Q  +         +LL ++  GN  + +  ++    R GK 
Sbjct: 741 PEIRFIGPAL-----LPPGQTQIRTIT--DEGQLLTLT--GNGLVAKRIQLYRPVRNGKF 791

Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM--SR--------GKGVRL 689
            L    E++   ++  T D  +AV+ ++ K   F    +  +   R        G GV L
Sbjct: 792 RL-FPDEDQTNWLLLRTTDTEIAVLDQHGK-RRF---DVRALQSGRNNVRYHRLGSGVEL 846

Query: 690 QSYKDGG 696
            S K GG
Sbjct: 847 ISVKSGG 853


>gi|262199502|ref|YP_003270711.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
 gi|262082849|gb|ACY18818.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
          Length = 1121

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE---SYRL 245
           +  PS    E      A +D   +  E+         F  G +   ++ S+      + L
Sbjct: 6   SDTPSQQPTETNTPNFAELDPDRVDYEEE----PRGKFGAGALAWMAKNSVAANVLMFVL 61

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK-----IAELIIAKRIPLLED 300
             GG  V      E        I++  +PY       +EK     + E +    +  ++ 
Sbjct: 62  LIGGAIVSTSLKQEVFPEFDLDIILVNVPYPGASPEEVEKGVGLAVEEAVR--GLTGIKQ 119

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           +   ++E +  V+    R  +PD L+  I    D  T FP
Sbjct: 120 VTTTASEGMATVVVELLRDSNPDQLLNEIKASVDRITSFP 159


>gi|317133759|ref|YP_004089670.1| hypothetical protein Rumal_3322 [Ruminococcus albus 7]
 gi|315450221|gb|ADU23784.1| hypothetical protein Rumal_3322 [Ruminococcus albus 7]
          Length = 1707

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 443 EEYQIKSELDNLLAEKEKIDSLL--------NSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           E   I+ E DN+    E IDS+L        +  KQ+   I  E+ + K + S+      
Sbjct: 429 ESKDIEKEYDNIEKRIENIDSILQDEKSSITDDEKQKLESIKDELEKDKAVLSEDKGNTD 488

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
           +     E S      +++   E E  +       W +   +   + +    K+ 
Sbjct: 489 KER--IEQSEKKSEVIRKDHSETEIESKHKLETAWNKIEAAVEKESNGQATKDD 540


>gi|118400550|ref|XP_001032597.1| hypothetical protein TTHERM_00584910 [Tetrahymena thermophila]
 gi|89286940|gb|EAR84934.1| hypothetical protein TTHERM_00584910 [Tetrahymena thermophila
           SB210]
          Length = 743

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
           ++    F    I ++  +    +  + +          VEEV + S   +++  P  V  
Sbjct: 33  FLKHQQFHPIYIKLDDDQYFKCAKCITQYKISGDQLILVEEVNQYSQSSIISNWPP-VND 91

Query: 280 SRLIEKIAELI-IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           S+L+ ++ +++        ++ + D              R L+  L      +   +   
Sbjct: 92  SQLLSQVEQIVNKDSDKSQIKILND--------FFENFRRELNEQLTNLQQIINIQINKY 143

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              N  +L +        +   L     + +E   + + F    I++R +I + L+ +  
Sbjct: 144 QNSNQTLLDVYNKLAEKQVFKQLLTSQTNTQESTVQFTLFLKDKIEQRSQISQELIKSIG 203

Query: 399 N-------IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL-RSLRKLEEYQIKSE 450
           N       ID  +     ED    +        E+      N  L  + R+++    +S 
Sbjct: 204 NYNQSIQEIDLDLPKKIKEDIIHSLEKVCLYFQEDNYKQNNNKELNYNFRQMKFNSDQSN 263

Query: 451 LDNLLAE------------KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           +D L+                KI+ +LN      N    ++ ++     +  D       
Sbjct: 264 VDKLIQLISNKSNFCTQRFISKIEQILNKYSVLIN--KEDMEDLFIEQKQPIDFSSLSIP 321

Query: 499 FCE 501
             E
Sbjct: 322 QLE 324


>gi|297664409|ref|XP_002810641.1| PREDICTED: formin-binding protein 1-like isoform 1 [Pongo abelii]
          Length = 605

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|227486090|ref|ZP_03916406.1| conjugative transposon mobilization protein [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235929|gb|EEI85944.1| conjugative transposon mobilization protein [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 456

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 69/214 (32%), Gaps = 10/214 (4%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
            K ++ E+I   +             +S +    ++  ++           I+       
Sbjct: 244 TKDKIKERIENKVNENYKNSEVYYVKKSYKKFDNIIGIESNEKVKSSKGYEIWARKHNMN 303

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
                +N L    +   M L+  L+E   +R+E+        +  I    +++  +    
Sbjct: 304 TMAKTLNQLRKYGLSSSMDLENKLQEEAVNRQEI--------LNKIKDVEKVMSEIYTVI 355

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL-NLRLRSLRKLEEYQI-KSELDNLL 455
            +I+ I          K     +   +E +   I     + +L K +   +   EL  L 
Sbjct: 356 EDINTIKINKVIYKTYKENTNDKDFYSEYKPQIIAYEKAINTLEKCQYKNLSIKELSKLY 415

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
            E +    +L       N +  E+ ++++   K 
Sbjct: 416 DEYKNKKDILMDDYANENILINELTQLRKNTDKY 449


>gi|15669512|ref|NP_248322.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
 gi|18202578|sp|Q58718|RAD50_METJA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|1591962|gb|AAB99331.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
          Length = 1005

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 278 QKSRLIEKIAELIIA-KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
               L+E++  L    ++I   + I +E  E     L  + ++++ + L      L   +
Sbjct: 362 TIKDLLEELKNLNEEIEKIEKYKRICEECKEYYEKYLELEEKAVEYNKLTLEYITLLQEK 421

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                N+N L       +     I  E + +  + +  +          ++E+ K L   
Sbjct: 422 KSIEKNINDLETRINKLLEETKNIDIESIENSLKEIEEKKKVLENLQKEKIELNKKLGEI 481

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
              I  +  I+    +    +  +  L +  +D    + L +  K +     +EL+ +  
Sbjct: 482 NSEIKRLKKILDELKE----VEGKCPLCKTPIDENKKMELINQHKTQLNNKYTELEEINK 537

Query: 457 EKEKIDSLLNSGKQQWNQIACE--IREVKEIF 486
           +  +I+      ++   +I  E  ++ +K ++
Sbjct: 538 KIREIEK---DIEKLKKEIDKEENLKTLKTLY 566


>gi|67474272|ref|XP_652885.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469784|gb|EAL47499.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 905

 Score = 39.7 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 83/274 (30%), Gaps = 17/274 (6%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           G   ++ + I  +       + I  +I       L +  +E  + +   +  K  S+   
Sbjct: 375 GKERLMTSIIEGKSNSDEWKKSIELVIKNADYHYLVNEMNEIKKSIEGGITEKRESIKMQ 434

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
                                         V  +     + +  + E         +   
Sbjct: 435 ERANERKK--------------AISSGRRSVSTIQEDACDDIKKQVEEKRNTIEDMLNKY 480

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT-ENQVDAILNLRLRSLRKL 442
           D ++  +K      ++       + N  + +     R +L  + Q  +I +++L  LR  
Sbjct: 481 DEKLSSIKKREKELMDNAVDENEVNNVSQLQNKKKERLTLCRQEQKKSIQDMKLGELRCE 540

Query: 443 EE--YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            E    +++E+       E+ +  L + +QQ N    E+           +  + ++   
Sbjct: 541 YERLETMENEIHRKEKVMEEYEKELANAEQQRNNHQKELLRNSIENRIDEEENKIKSERK 600

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           E+    +   +     +  IT++       +  K
Sbjct: 601 ELEERIQKGEEDTEQYERDITLLTIQCDNEKKRK 634


>gi|241888510|ref|ZP_04775818.1| lpxtg-motif cell wall anchor domain protein [Gemella haemolysans
           ATCC 10379]
 gi|241864777|gb|EER69151.1| lpxtg-motif cell wall anchor domain protein [Gemella haemolysans
           ATCC 10379]
          Length = 511

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 82/259 (31%), Gaps = 19/259 (7%)

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNR------------SLDPDLLMESIFMLSDMETRF 339
             +   + +   E+ +D  I ++ K              ++D + +  +  + +  +   
Sbjct: 145 DFKDTTIIENYSENEKDAFIGVYKKKFPGRTGYPKTLSYNVDKNKIDVNNKLETFTQVFV 204

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
           P+  N+ +     +++    +                    +  ++     + L      
Sbjct: 205 PVMENIFAGSGTQRMILKYDLSSLTTKTITIPKVDTEKLAKEKAEKERIEREKLAKEKAE 264

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            + I      ++K +   + R  L + + +    +    L K +  + + E + L  EK 
Sbjct: 265 KERIERERLAKEKAEKERIERERLAKEKAEK-ERIERERLAKEKAEKERIEAERLAKEKA 323

Query: 460 KIDSL----LNSGKQQWNQIACEI--REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           + + +    L   K +  +I  E   +E  E      +   +  T  E    +KA +   
Sbjct: 324 EKEHIEAERLAKEKAEKERIEKERLAKEKAEKERIEKERLAKEKTEKERLEREKAPVTAK 383

Query: 514 MIEKEPITVVISNRGWIRS 532
                         G++++
Sbjct: 384 GEAAILEVPEFDLEGYLKN 402


>gi|319938288|ref|ZP_08012685.1| hypothetical protein HMPREF9488_03521 [Coprobacillus sp. 29_1]
 gi|319806581|gb|EFW03239.1| hypothetical protein HMPREF9488_03521 [Coprobacillus sp. 29_1]
          Length = 580

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 91/260 (35%), Gaps = 18/260 (6%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           +V +    +    I Y+     L+EKI ++   + +  +E IR +      I  F   R 
Sbjct: 117 KVSKKMKQLDEMLIVYEKDSQELLEKIEKITEIENVQRIEIIRVKEMYRETIDHFESIRF 176

Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              + +   + + ++++  F   + +  M             K+  A    V  R     
Sbjct: 177 KVEEFVPNLLDIFNEIDDSF---VKLEGMMNNQLFEDAKEFTKDIEAKVIWVNQR----- 228

Query: 380 MQAIDRRVEILKGLL-IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
           ++ +   + +++  +     +I  +I I+  E      + +   L   Q    L   +  
Sbjct: 229 LEDLPSYIAVVRQYMPKKVAHIQGLIQIMTEEKFSLNQLDAYNRLNMIQTT--LEESIGH 286

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-------IREVKEIFSKSTD 491
           ++KLE   I   L NL    + +   L   K+ +++   +       I E+ + + +   
Sbjct: 287 IKKLELDNIGEVLQNLSDAIDSLIQDLEGEKRSFDEFKEKWDASYTLITEIYDQYKQVMI 346

Query: 492 LGRRRTTFCEVSRADKATLQ 511
              R  +   +   D    +
Sbjct: 347 DYNRMRSLYVIDDLDIVIDE 366


>gi|313236047|emb|CBY11373.1| unnamed protein product [Oikopleura dioica]
          Length = 3979

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 80/265 (30%), Gaps = 13/265 (4%)

Query: 260  EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            +       + + E+  QV K ++     E +       L+   DE+ +   +    + R 
Sbjct: 824  KNASDRDAVFIKELEEQVSKLKMQVTSLEDLNNSSDASLKQSADENTKLSSLNSDLQKRL 883

Query: 320  LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             +    +E +   +        N   +    +  V     I     A R  +    S   
Sbjct: 884  TELTATLEVVDKCARKVENDNEN---IKKMHILVVANFRMIKNFVQALRDSIQILESDID 940

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
                ++ + I+          D  +  I N    K          ++    I NL     
Sbjct: 941  ----EKEIIIVDFKNQQKNQEDAKLVFIANIKLLKEKQDQLTENNKSSAVEIDNL----- 991

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
             K E   +  EL  L  E E + + L S +   + +  E  E++   +            
Sbjct: 992  -KSEVSVLSGELKILALENENLKASLQSSEDAKSLLEKENDELQTTMTDRNRDFDEMRKV 1050

Query: 500  CEVSRADKATLQQAMIEKEPITVVI 524
             E+   +  +L ++    +   + +
Sbjct: 1051 KELISIEHESLLRSTQANDKKILEL 1075


>gi|257067102|ref|YP_003153358.1| transketolase [Anaerococcus prevotii DSM 20548]
 gi|256798982|gb|ACV29637.1| transketolase [Anaerococcus prevotii DSM 20548]
          Length = 662

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613
             +A T D  + +  DG  +  P   L   R     I L     +   +      +S  K
Sbjct: 455 LTYAMTHD-SVAVGEDGPTHE-PIEQLAMLRAIPNTIVLRPADANETRLAWKVALESKDK 512

Query: 614 -LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671
            +++  ++ N   ++E+E + N  KG   +K +    + L+   TG  VA+  E  K L
Sbjct: 513 PVVIALTRQNIPNLKETEDLDNIDKGAYIIKDAENPDLVLIA--TGSEVALAIETSKAL 569


>gi|156101702|ref|XP_001616544.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805418|gb|EDL46817.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 2546

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 99/299 (33%), Gaps = 38/299 (12%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------IPLLEDIRDE----SAED 308
            EE+ R     ++ E   + +  +  E I EL  +K+      I +++ + +E    + E 
Sbjct: 1021 EELRRNERSNLIKENELKSRIDKYNELIDELNKSKKELENERIKMMDQLENEKMKLANER 1080

Query: 309  VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
              + +  +N        +     +  +E    + M ++      +   LD + KE    R
Sbjct: 1081 KHLEVERENERSYMKEELNK-ERMLMVEDVDKMKMIMMEDMERTKNAMLDNVEKENKRMR 1139

Query: 369  REVLFRRS--------------SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
             +V   R               ++  +     +E  K  L    N +         ++ K
Sbjct: 1140 EDVENERRAMLKGMEEDKDKFKAYVEKKCKENLENEKVALEKKYNEEANKLQNEVANERK 1199

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
             ++  R S    Q   I     RS  +  E  I+ + + L  E+ K+  L+   +++   
Sbjct: 1200 KLLKDRDSF--EQQKKIYEEEFRSKCEKYEESIQKKYEQLDEERSKMKYLIMKEQEELEN 1257

Query: 475  IAC----EIREVK-------EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                   +I E K       E  +   +  +      E+   +    ++       I +
Sbjct: 1258 FKKRVYLDIEEEKDKLYVQQEKLNLEKENLQVEKEQIEIELKNYKNFKEKEENDIKIRI 1316


>gi|47227271|emb|CAF96820.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1019

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 15/208 (7%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           ++ +D   V            +++               + V       ++      L  
Sbjct: 34  DAHDDGSRVSEL-------QEILDRTNKELSQSREHSSALGVRIAELEAELTNARRELSR 86

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA----YLNIDEIIAIIRNEDKPKPVMVS 419
                  +  +R     + ++ R+  L+   +A      +I ++   + NE   K  +  
Sbjct: 87  SEE--LSIKQQREQREREDLEERITTLEKRYLAAQRETTHIHDLNDKLENELATKDSLHR 144

Query: 420 RFSLTENQVDAILNLRLRSLRKLEE--YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           +      Q+  +L +  + L +       +      L      +  LL + ++  N    
Sbjct: 145 QSEEKVRQLQEMLEMAEQRLAQTMRKAETLPEVEAELAQRVAALCRLLQAEERHGNVEER 204

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRA 505
             +   ++  K+ +LGR R         
Sbjct: 205 LRQLESQLEEKNQELGRARQREKMNEEH 232


>gi|270158722|ref|ZP_06187379.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|269990747|gb|EEZ97001.1| conserved hypothetical protein [Legionella longbeachae D-4968]
          Length = 572

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAI-IRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            +    +++E  +  L      +E I I + + DK K  + +     ENQ   +L  + +
Sbjct: 269 ELHEKSKQLEQFEKALSDLKIENEQIKIELTDLDKKKIQIDTLSKEKENQAI-LLQQQSQ 327

Query: 438 SLRKLE--EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            L  L+  E     ELD    + E+ +  L+  K +  QI  E+ ++ + 
Sbjct: 328 KLDTLKSKEDATLKELDEKSKQLEQFEKTLSDLKIENEQIKIELTDLDKK 377


>gi|256600192|ref|NP_001157945.1| formin-binding protein 1-like isoform 3 [Homo sapiens]
 gi|332809542|ref|XP_524770.3| PREDICTED: formin binding protein 1-like isoform 2 [Pan
           troglodytes]
          Length = 605

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|282917901|ref|ZP_06325651.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           D139]
 gi|282318186|gb|EFB48546.1| ferrous iron transporter B [Staphylococcus aureus subsp. aureus
           D139]
          Length = 664

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       R  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYRPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|167039788|ref|YP_001662773.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|256752114|ref|ZP_05492981.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|289578850|ref|YP_003477477.1| ferrous iron transporter B [Thermoanaerobacter italicus Ab9]
 gi|300914968|ref|ZP_07132283.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307724888|ref|YP_003904639.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
 gi|166854028|gb|ABY92437.1| ferrous iron transport protein B [Thermoanaerobacter sp. X514]
 gi|256749023|gb|EEU62060.1| ferrous iron transport protein B [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|289528563|gb|ADD02915.1| ferrous iron transport protein B [Thermoanaerobacter italicus Ab9]
 gi|300888692|gb|EFK83839.1| ferrous iron transport protein B [Thermoanaerobacter sp. X561]
 gi|307581949|gb|ADN55348.1| ferrous iron transport protein B [Thermoanaerobacter sp. X513]
          Length = 680

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 22/237 (9%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + +   +++ +        +D    I    DK K ++    +LT+           R L 
Sbjct: 162 ELLQAVLKVYESKEKEVYKVDYGKEIEEEIDKLKKLIEKEENLTK-----------RFLA 210

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +    ++    +NL+ E E    +L+  K+    +   + E  EI               
Sbjct: 211 RWLAVKLLENDENLIKEIENYKDILSQLKESRKYLEEVLGEDAEILIADKRYSFISGIIK 270

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
           E  R       +  +  +   +V +    I         +    F  GD L   +     
Sbjct: 271 ECVRKHYTVEDRYTLSDKIDKIVTNRYLGIPIFLLAMWGVFQFTFVIGDPLVGWIET--- 327

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617
                    G+       N+    G  E I   I       I +  V+     LL  
Sbjct: 328 ----FFGWLGEVTNTVLANI----GVPEVITSFITDGLIGGIGSVLVFIPPIFLLFF 376


>gi|82596949|ref|XP_726474.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481897|gb|EAA18039.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1985

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 86/269 (31%), Gaps = 28/269 (10%)

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR---IPLLEDIRDESAEDVRIVLFP 315
           EE+ R     ++ E   + +  +  E I EL   K+      ++ + D   E ++++   
Sbjct: 651 EELRRNERNNLIKENELKNRIDKYNELIDELNKNKKEIENDKMKMLNDIQDERIKLLNET 710

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
            N   + +  +  +      E           +  +  V  +  ++ E + + + ++   
Sbjct: 711 NNIKKENEKEINYMKEEIKKER----------ISMINDVEKMKRLMLEDIENTKNIMLED 760

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
                  I    EI     +   NI++     +   + K         +E Q        
Sbjct: 761 MEKENTKIKE--EIENDKRMMIKNIEDEKEKYKTYLEEKFNENLEKEKSELQKKYD---- 814

Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
                  E  ++++E++N   +  K      + ++Q      E R   E + +       
Sbjct: 815 ------DENNRLQAEINNEKKKINKERD---NLEKQKKVYEDEFRNKCEKYEEDIRKKYN 865

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVI 524
                E +   +   +Q  +E     V +
Sbjct: 866 MLEEEENNMKYRIMKEQEELENYKKNVYL 894


>gi|302380271|ref|ZP_07268742.1| PA domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311876|gb|EFK93886.1| PA domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 1933

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 43/289 (14%)

Query: 203  ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI--VESYRLGRGGFRVRARWCVEE 260
               +  + E    +  +    P  PT  I V+  E++  +E Y  G    RV   W   E
Sbjct: 1312 IRRIRKDFEAPTIEYTKEHKDPTAPTAKIKVKGHENMTYLEMYLDGNMLSRVDKTWDAFE 1371

Query: 261  VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN--- 317
            +  G       E+P +V +++                ++   D   E ++ V  P+    
Sbjct: 1372 LENGVTGEFEIEVPLEVGENKFK--------------IKAYDDAGNETIQEVSIPRKEPK 1417

Query: 318  --RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                 D   LM ++         + +  N        + +     L E          R 
Sbjct: 1418 VADPADTKDLMNNLIK------AYSVTENPDVYDVTDEQLAELKALIEQA--------RT 1463

Query: 376  SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
            +    Q  ++  EI K L  A   I E           K V        +     +L  +
Sbjct: 1464 AISEQQPQEKVDEINKKLTDALDKIKEKQV--------KKVDKKELIGQKEDAQDLLKKK 1515

Query: 436  LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
               L   ++  ++  +       +K D+      +   +I  EI +++E
Sbjct: 1516 EVKLTDEQQKALQDLIKKAEDLTKKEDATQEEVDKLAKEIKDEIAKIQE 1564


>gi|221059862|ref|XP_002260576.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
 gi|193810650|emb|CAQ42548.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
            knowlesi strain H]
          Length = 2526

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 22/247 (8%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------IPLLEDIRDESAE----- 307
            EE+ R     ++ E   + +  +  E I EL  +K+      I +L  + +E        
Sbjct: 993  EELRRNERSNLIKENELKSRIDKYNELIEELNKSKKELESERIKMLNQMENEKKHLEMEK 1052

Query: 308  -----DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
                  +   L  +   +  D+    + ML DME      ++ +          ++   +
Sbjct: 1053 ENERNYMMEELNKERMIMVADVDKMKMIMLEDMERTKNAMLDNVEKENKRMNEEVENERR 1112

Query: 363  EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
              +    E   +   +  +     +E  K  L    N +         ++ K +M  R S
Sbjct: 1113 AMVKTMEEDKDKFKDYVEKKYKENLENEKLTLEKKYNEEVNKLKNEIANERKKIMKDRDS 1172

Query: 423  LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC----E 478
                Q   I     RS  +  E  I+ + + L  EK K+  L+   +++          +
Sbjct: 1173 F--EQQKKIYEEEFRSKCEKYEEGIQKKYELLDEEKSKMKYLIMKEQEELENFKKRVYLD 1230

Query: 479  IREVKEI 485
            I E K+ 
Sbjct: 1231 IEEEKDK 1237


>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
          Length = 516

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 72/273 (26%), Gaps = 42/273 (15%)

Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254
              ++       +  P IS E+  E I     P    I +++  I  +  L +   ++  
Sbjct: 268 CFADVMFCYSHFVQCPPISWEEFKEDIARNWPP----IYDTKYIIQSAQPLEKIRGKLET 323

Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
              +E +             +       I+   EL          D     A     +  
Sbjct: 324 STSIENLAE-----------FIKSNMNYIQIDVELEQNLYHTAGFD-----AYMTGFIFI 367

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ------------------VMP 356
              +      L      L+  ++ + +N+N     ++ Q                     
Sbjct: 368 NLTKDFTQQELQNQKNKLNQFKSNYSINLNSAEDIKLNQKYVIYIKLPEEDRRNLQIQKN 427

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
                ++  A    V   +  + + A      I    +    N +  +  I+N+    P 
Sbjct: 428 QRQQFQKS-AFDNIVNTLKQQYDLSASRT---IHYKYIYIEFNQEYNLKQIQNKLSKVPE 483

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449
                   E Q +           KLE +  + 
Sbjct: 484 FQECQLFNEQQYEKDRREFKEKEAKLERFDKRQ 516


>gi|183232504|ref|XP_652504.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802009|gb|EAL47117.2| hypothetical protein EHI_174230 [Entamoeba histolytica HM-1:IMSS]
          Length = 587

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 3/145 (2%)

Query: 384 DRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
               E L+ +   Y N ID+I +  +  +K            E Q    L+   R L   
Sbjct: 208 KEINEQLERMFEQYGNLIDKITSDYKEYNKDIDNTHDESKQQEIQWRNELDNVKRRLAAE 267

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E  + +SE++      +++       K++   I  EI E +      T +          
Sbjct: 268 ERLKKESEIEGFKKAMKELKKENGELKKENETIRQEINEYRIYV--PTFICNCFKEIMNS 325

Query: 503 SRADKATLQQAMIEKEPITVVISNR 527
              +     Q+  E   + V  S  
Sbjct: 326 HGIEYNVNPQSQTENITMYVDPSEF 350


>gi|167900466|ref|NP_001108137.1| formin-binding protein 1-like isoform 1 [Mus musculus]
          Length = 609

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|118572314|sp|Q8K012|FBP1L_MOUSE RecName: Full=Formin-binding protein 1-like; AltName:
           Full=Transducer of Cdc42-dependent actin assembly
           protein 1; Short=Toca-1
          Length = 605

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|118366145|ref|XP_001016291.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89298058|gb|EAR96046.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 2937

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 94/316 (29%), Gaps = 11/316 (3%)

Query: 258  VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317
            +EE+              +   ++L   +   +    +  +E    +S  +       K 
Sbjct: 1789 IEELQNIIETQQQEINLMEQNMTKLKNDLDRKVKDLDVKNIEIQAKDSDLESAYAQIDKI 1848

Query: 318  RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
                   L E      ++          L          +  + K     ++++      
Sbjct: 1849 DIQYQHKLNEYESKQQELANNNNHLEGKLIELEDKYNKDVSELQKVIEQQQQDLNNLEQE 1908

Query: 378  FRMQ--AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
               Q    +    +   L    + +DE  + I  ++K    M  +    E Q    L  +
Sbjct: 1909 LYNQGSQNEETSNLRVELEKVSIQLDERNSEILIKNKELDSMYEQIDKIERQYQQKLREQ 1968

Query: 436  ------LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
                  L+ L+K  + Q+    +    +   + +++   ++  N +  ++ E  +   ++
Sbjct: 1969 EIKIQDLQKLKKEYDQQLLELDNKNSQDIADLKNIIEQQQEDLNNMQKDLFENTKHQEEN 2028

Query: 490  TDLGR--RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
             +L     R      S   +   +   + ++   +   N+  +R  +    DL     KE
Sbjct: 2029 NNLRFELERKNIQLNSDLIQKNKELDQLHEQINKIEKQNQQKLRDQELKLQDLQNQK-KE 2087

Query: 548  GDSLKIALHAHTTDRI 563
             D   +         I
Sbjct: 2088 FDLKLMEQEEKNNQYI 2103


>gi|195503747|ref|XP_002098782.1| GE10559 [Drosophila yakuba]
 gi|194184883|gb|EDW98494.1| GE10559 [Drosophila yakuba]
          Length = 1265

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LVARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|156550675|ref|XP_001605377.1| PREDICTED: similar to DCAPL3 [Nasonia vitripennis]
          Length = 2978

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 8/137 (5%)

Query: 382  AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
             + ++V + K  +      D+ +A  +  D+ K V          Q+ A   +R   L K
Sbjct: 1771 KVKKQVTVDKDCIDTRSIFDKGLAKSKTPDEAKQVNAEEVMENLKQLQA--GMR-EQLEK 1827

Query: 442  LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
             + Y +  E        +++  +    KQ  + I  E  E +       +L  RR     
Sbjct: 1828 RKRYSLPQEYYE-----KQLRYIEKLEKQLKDVIVAEEDEKRAAEEFQRELEHRRRVNKL 1882

Query: 502  VSRADKATLQQAMIEKE 518
               +   +       KE
Sbjct: 1883 RPYSVIESSFLDWPNKE 1899


>gi|290992244|ref|XP_002678744.1| predicted protein [Naegleria gruberi]
 gi|284092358|gb|EFC46000.1| predicted protein [Naegleria gruberi]
          Length = 460

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE--EYQIKSELDNLLAEKEKI 461
           + +IRN  + K            +      L  +  + L+  E +++ E      +  + 
Sbjct: 11  VELIRNTPEYKAAWELELWKKREKTVYKKQLEEKEKQHLKNVEAKLREEFSKYEKQILEQ 70

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
             +L S +QQ+NQ+  E+   ++         RRR T  E     K    + +I+ E 
Sbjct: 71  KEILKSKEQQYNQVLEEMNAREKQLVGVELELRRRKTELETDYQRKIEHMEHVIKMEK 128


>gi|144853496|gb|AAI12402.2| 5033413D22Rik protein [Mus musculus]
          Length = 750

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 77/213 (36%), Gaps = 16/213 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+ +  I +++++  +   ++ + L  K++      L    +    M+  F +  
Sbjct: 204 QQLQKLLESLEIHMIQEVLRKVNREMTLFLSEKSKEES--TLPTDRWKHQVMKENFSVMR 261

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEILK 391
             +    V ++M         +  RR            +V+ R  S           IL+
Sbjct: 262 PQIVERFVQRLMEDSQDDGPKITFRREHLEACILSLGCDVMARERSNFETYSMCYEHILQ 321

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                    ++ + ++R    P      +   L+ + +  I  LR   L  LEE  +  +
Sbjct: 322 HTRQKLSQKEQEVDLLRRSQVPSEDCAGQVAELSHDMIMEITALR-AQLTDLEEENLNLK 380

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +      +E+   L+ +      +I  ++ E +
Sbjct: 381 IQIRKEVQEEYRELVQALFLTCLRIKEKLDENQ 413


>gi|56203525|emb|CAI18953.1| formin binding protein 1-like [Homo sapiens]
 gi|56205711|emb|CAI18980.1| formin binding protein 1-like [Homo sapiens]
          Length = 600

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|297841601|ref|XP_002888682.1| hypothetical protein ARALYDRAFT_476006 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334523|gb|EFH64941.1| hypothetical protein ARALYDRAFT_476006 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1085

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 92/250 (36%), Gaps = 20/250 (8%)

Query: 275 YQVQKSRLIEKIAE---LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           + V KS   EK+AE   L+I  +   LE  R+ +  + +  +  +  S     L E    
Sbjct: 155 HSVVKSTSEEKLAEANALVIGMKEKALEVDRERAIAEEKFSVINRKSSELERKLKEVETR 214

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL------AHRREVLFRRSSFRMQAIDR 385
               +      +                 L+EW         R   + R  + R + I  
Sbjct: 215 EKVFQREHLSLVTEREAHEAVFYK-QREDLQEWEKKLTLEEDRLSEVKRSFNHREEIIME 273

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----SRFSLTENQVDAI---LNLRLRS 438
           +   +K       N+ + I I ++E   K   +    +  SL E   +A+   ++++ + 
Sbjct: 274 KERTIKKKEKILENLQQKIYISKSELTEKEESIKIKLNDISLKEKDFEAMKAKVDIKEKE 333

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L + EE  I+ E   +    +   ++L+S +Q++     E+ +++    +     +    
Sbjct: 334 LHEFEEKLIEREQMEIGKLLDDQKAVLDSRRQEFEM---ELEQMRRSLDEELKGKKAEIE 390

Query: 499 FCEVSRADKA 508
             +V  +D  
Sbjct: 391 QLQVEISDNE 400



 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 90/254 (35%), Gaps = 27/254 (10%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-RSLDPDLLMESIFMLSDMETRFPL 341
            EKI E +  ++I + +    E  E ++I L   + +  D + +   + +       F  
Sbjct: 281 KEKILENLQ-QKIYISKSELTEKEESIKIKLNDISLKEKDFEAMKAKVDIKEKELHEFEE 339

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
            +       + +++            +  +  RR  F M+    R  + + L      I+
Sbjct: 340 KLIEREQMEIGKLLD---------DQKAVLDSRRQEFEMELEQMRRSLDEELKGKKAEIE 390

Query: 402 EIIAIIRNEDK-------PKPVMVSRFSLTENQVDAILNLRLRSLRKL---------EEY 445
           ++   I + ++           M       EN ++AIL       + L         E  
Sbjct: 391 QLQVEISDNEEKLAKREAALEKMEEGVKEKENDLEAILKTVKEKEKSLKAEEKKLHIENE 450

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
           ++  + D L   K++I+ +     +Q ++I  E   ++    +  +  R ++   +    
Sbjct: 451 RLHEDKDCLRKLKDEIEEIGAETTKQESRIREEHESLRVTKEERVEFLRLQSELKQQIDK 510

Query: 506 DKATLQQAMIEKEP 519
            K   +  + E+E 
Sbjct: 511 VKQEEEVLLKEREE 524


>gi|82540908|ref|XP_724736.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479483|gb|EAA16301.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1641

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 69/263 (26%), Gaps = 17/263 (6%)

Query: 291  IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
               +   LE I+ +++    +     N+  + +  + +       +T    N    +   
Sbjct: 1073 ENNKYDHLEPIQTDASTSNILNTEKINKFNNIEEYINTFINDEQTQTNTKNNTYSETNNN 1132

Query: 351  VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK-GLLIAYLNIDEIIAIIRN 409
                +       E    ++                R +I        + + D+      N
Sbjct: 1133 SLHELSEQENTNEKKHEKKHEKKHEKINLRNQNKYRQDIDVPEQKNIHYHSDKPNKTFDN 1192

Query: 410  EDKPKPVMVSRFSLTENQ----VDAILNL----RLRSLRKLEEYQIKSELDNLLAEKEKI 461
              + K     +  +  +Q       I N+     +  L+K+E  +   +L  +       
Sbjct: 1193 NTENKIESEKQDKINIDQIVSKALYIGNMLKKAEIERLKKIERLKKIEKLKEVEK----- 1247

Query: 462  DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               L   ++       +  +    F+                +       +  +  E   
Sbjct: 1248 ---LKEVEKLKEVDKLKNEDSTIHFADDNKENNSELNQINNFQNKNIMEPENELATEQSN 1304

Query: 522  VVISNRGWIRSLKSHSVDLSALH 544
                   + +++   S +L A  
Sbjct: 1305 SKQFKDNYKKNINKDSEELKAYK 1327


>gi|126310574|ref|XP_001376269.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 988

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP-- 340
           I+KI +    ++I  +E +R E  E     L  + R  +  ++   I    ++E      
Sbjct: 66  IQKILKECHTEKIQAIETVRAEEQEMAMEALKEQKRKNEEKIIEAGILSHKNLEKSIKEV 125

Query: 341 -------LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKG 392
                  +N+N     +  +    + + +    HR     ++ + ++  I+  + E  + 
Sbjct: 126 AKATEHQMNINFSLSQKKKEEEVNEVLNEAEKVHRAS--IKKVAKKLTVIEGELQEKTEQ 183

Query: 393 LLIAYLNIDEIIAIIRNEDKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
           L       D +   +    +   K +  +  +L+  Q D IL LR +    LEE    +E
Sbjct: 184 LENMTHWKDFLEEELLETREAFQKYINFTYPTLSPGQADFILPLRKKPPSDLEESIAVTE 243


>gi|118572313|sp|Q5T0N5|FBP1L_HUMAN RecName: Full=Formin-binding protein 1-like; AltName:
           Full=Transducer of Cdc42-dependent actin assembly
           protein 1; Short=Toca-1
          Length = 605

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|326680306|ref|XP_692911.5| PREDICTED: ras association domain-containing protein 8 [Danio
           rerio]
          Length = 412

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 75/222 (33%), Gaps = 16/222 (7%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D   E+    S  ET     M  L             ++ E        L       M+ 
Sbjct: 180 DKECETWEKSSAKETSVQAEMEALEKMM---WKNQQELVDEEFWQEELRLETERERGMK- 235

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-----AILNLRLR 437
             R  E+   L      + E        +K   + + R  +   Q D      ++   L+
Sbjct: 236 -RRVGELHAKLDDCGQKLHEFNNRAIQLEKDIQIEMLRVDILPVQSDSKDSLEVVKADLQ 294

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-----EIFSKSTDL 492
           S +K  E  +++EL  L     + ++LL + +++  ++  E+R+       +        
Sbjct: 295 SRQKQGEE-MEAELKELEKTLGRAETLLKAKQEEIEELNKELRQCNLQQFIKQAGAPPTQ 353

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            + RT  CE       T QQ   +   +T+  + + ++   +
Sbjct: 354 TQPRTDLCEHPEELNQTQQQDKHKDNDLTLRPTAKQFLGHPR 395


>gi|209882286|ref|XP_002142580.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209558186|gb|EEA08231.1| hypothetical protein CMU_011830 [Cryptosporidium muris RN66]
          Length = 1610

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 93/268 (34%), Gaps = 20/268 (7%)

Query: 225  DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI--VVTEIPYQVQKSRL 282
            D    G   +  +S+   Y              + ++      I  ++ E+ Y       
Sbjct: 814  DIQDNGFFKKVDDSLRSGYDNENLTNESHENSIISDIEYKKAGIENIIPEMGYNTNSLDN 873

Query: 283  IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
              KI E+ I K IP    +   S   +  V   +N+  D  ++ +SI      +    L+
Sbjct: 874  GGKIKEISIDKNIPSGSFVEQSSQRVIYDVPHNQNKMSDASIIHDSI----PFQD---LD 926

Query: 343  MNVLSMGRVPQVMPLDGILKEWLAHRREV-------LFRRSSFRMQAIDRRVEILKGLLI 395
            +         +   +  ++ E   H + +            +  +  +    E  + ++ 
Sbjct: 927  LKTAINFTKEKQKKIKEMINETERHIKSIEPIESKSFIESINNEISQLKNEQENTREMIN 986

Query: 396  AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL---RLRSLRKLEEYQIKSELD 452
                  + + +I +E   K +      + + Q  +I  +     R ++ +E  + KS ++
Sbjct: 987  ETEKQIKPLGVIESESLTKSIENEISQVRDKQ-KSIKEMINETERRIKSIEPIESKSVIE 1045

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            ++     ++ +   + K+  N+   +I+
Sbjct: 1046 SIKNAISQLKNEQENTKEMINKTKKQIK 1073


>gi|123447307|ref|XP_001312395.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894240|gb|EAX99465.1| hypothetical protein TVAG_053080 [Trichomonas vaginalis G3]
          Length = 884

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 84/227 (37%), Gaps = 13/227 (5%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
               +++K  EL  +     +E+ ++E    ++I+        +   +          + 
Sbjct: 457 SCEVVMKKSEELRES-----IENYQNE----IQILTEKLENEQNFVKIQNEKLQNDMEKL 507

Query: 338 RFPLNMNVL--SMGRVPQVMPLDGILKEWLAHRREV-LFRRSSFRMQAIDRRVEILKGLL 394
               N   +     ++ ++     +  E+      +   ++    ++ +   ++  +   
Sbjct: 508 SKSKNEVEIKLENTKLKEIELQKELFGEYNEENNPLLKLKQMKSEIEELQNEIKSKEEFN 567

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
              L   + + +  N+ K K  +  + +L   Q   IL  ++ +L  L +  ++  ++N 
Sbjct: 568 NVNLREIDNLQVSLNQTKQKLFLSDKSNLELKQNQEILKEKISNLENLNKENLEK-INNQ 626

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
             E  +I++ L + ++  N    ++ +++  F    +  + R    E
Sbjct: 627 KKEIGEINTKLGNDQEMINTKTQQLLDLQNKFDDLENKEKERKILFE 673


>gi|301765126|ref|XP_002917980.1| PREDICTED: formin-binding protein 1-like [Ailuropoda melanoleuca]
          Length = 604

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 16  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 67

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 68  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 119

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 120 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 156


>gi|161833767|ref|YP_001597963.1| putative outer membrane protein [Candidatus Sulcia muelleri GWSS]
 gi|152206257|gb|ABS30567.1| putative outer membrane protein [Candidatus Sulcia muelleri GWSS]
          Length = 1138

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 8/221 (3%)

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL-NMNVLSMGRVPQVMPLD 358
           D   ++  DV  +   K      + +       +D +      N          +     
Sbjct: 108 DREKDNKTDVNNLYEKKIGETYFNKIDGGKDKKTDNKKENKTDNKKEKENKTENKTENKT 167

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
               +   H  E   +          +R  I K ++    + D  I     + +  P + 
Sbjct: 168 ENKTDNKTHEGEAEGKAEEIDFNKFYKR--INKEMIDEISDSDSEI-----DPEIDPEID 220

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
                 E     I  +  +++ ++ E  I         E E   ++++  ++++     E
Sbjct: 221 PEIDFDEIDSSMIDKINKKNINRIYEKNIDKIKKENKPEIEFDKTIIDKIEKKYQTEIDE 280

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           I E+ +I          + +  E++       +      E 
Sbjct: 281 IDEIDKIDEIDEIDEFEKKSQTEINENGSEINENGSEINEN 321


>gi|56203524|emb|CAI18952.1| formin binding protein 1-like [Homo sapiens]
 gi|56205710|emb|CAI18979.1| formin binding protein 1-like [Homo sapiens]
          Length = 604

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|118362960|ref|XP_001014708.1| DNA-directed RNA polymerase, omega subunit family protein
            [Tetrahymena thermophila]
 gi|89296472|gb|EAR94460.1| DNA-directed RNA polymerase, omega subunit family protein
            [Tetrahymena thermophila SB210]
          Length = 4331

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 91/287 (31%), Gaps = 21/287 (7%)

Query: 239  IVESYRLGRGGFRVRARWCVEEVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294
            I E Y+          +  ++++          +V+ E  +Q + S L EK         
Sbjct: 3160 IEEKYQTQIQELEKNHQVKIKDLADKFTVCEDTLVLQEKQFQEKLSNLQEKYNLEQTNYE 3219

Query: 295  IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354
               ++       ++++  L      L   +    I      E +  ++ N  ++ +    
Sbjct: 3220 SLQID------HQNIQSQLNLLQEELQKQIEGNHILSQKQQEEKDLVSENSQNLQQQNLD 3273

Query: 355  MPLDGILKEWLAHRREVLFRRSSFRMQAI--DRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            +  +    +    + +    +   +++ +  D++    +   +      EI    +   K
Sbjct: 3274 LHKENEESKAKIQQMKEKLSQLEEQIEKVNDDKQKSQEENEKMRIEKETEIEEKEKEIQK 3333

Query: 413  PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
             K  +     + E Q   I          +E  + K +LD    +   ++ +L   +++ 
Sbjct: 3334 LKVQIQDLEGVMEEQTQQI------QTANVEVEKFKKDLDERYNQIAFLEDILKQLEEEK 3387

Query: 473  NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            N +   + E      +       R T  E        +    IE+E 
Sbjct: 3388 NNLQNTLNECDNALIQE---RNERATVEETINLLNDKITNLQIERED 3431


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 58 IHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96
          ++ M+E+G+      KKSARIVG+V+GK HPHGD ++Y+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|58266552|ref|XP_570432.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134111076|ref|XP_775680.1| hypothetical protein CNBD4090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258344|gb|EAL21033.1| hypothetical protein CNBD4090 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226665|gb|AAW43125.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1076

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 23/143 (16%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
              + +     R EVL  R+           EI   LL    ++   +  I+     K +
Sbjct: 468 EKELQQVAEEWRDEVLEARTQIDELKDQEIKEIRDSLLEREEHLTGALEEIQELQAAKAI 527

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS---------ELDNLLAEKEKIDSLLNS 467
              R   T              L+ +E   ++          E++ L     +++  L  
Sbjct: 528 THDRLEET--------------LKNIERDNVEKDAELMDANREIEELGQRVYELEEALED 573

Query: 468 GKQQWNQIACEIREVKEIFSKST 490
            + +   ++ ++R   E F  + 
Sbjct: 574 HRAREANLSADLRSADEEFENAK 596


>gi|291413036|ref|XP_002722777.1| PREDICTED: restin isoform 2 [Oryctolagus cuniculus]
          Length = 1388

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 29/243 (11%)

Query: 278 QKSRLIEKIA---ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
            KS+L   IA   + +   ++   + +  ESAE   +    +   LD    +E +    D
Sbjct: 573 WKSKLETAIASHQQAMAELKVSFTKGLGTESAEFAELKAQIEKVRLDYQHEIERLQSQQD 632

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEW-------LAHRREVLFRRSSFRMQAIDRRV 387
            E             ++ +V+       E           +  V    +  R+Q  + +V
Sbjct: 633 SERSAHAKEVDALRAKLLKVIKEKEDSLEALKSKLDRAEDQHLVEMEDTLNRLQEAETKV 692

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------VSRFSLTENQVDAILNLRLR 437
           + L+ L        E+I    ++ K                S       Q+   L    +
Sbjct: 693 KELEALRARCSEQTEVIDNFASQLKATEEKLLDLDALRKASSEGKSEIQQLRQQLEAAEK 752

Query: 438 SLRKLEEYQ---------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            ++ LE  +         I  EL     +   ++  L+   +    +  E+R +KE F+ 
Sbjct: 753 QIKNLEIEKDAESGKASGIARELQEKELKLTTLEENLSGVSRVKEALETELRVLKEKFAD 812

Query: 489 STD 491
           +++
Sbjct: 813 ASE 815


>gi|123438677|ref|XP_001310118.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121891874|gb|EAX97188.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3977

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 359  GILKEWLAHRREVLFRRSSFR---------MQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409
             I +    H  ++  RR  F          ++ +   ++I +       N +E +     
Sbjct: 2739 EISQLNSQHESDLDSRRKQFEKELEELRNQLEKLQNEIQIREQRGKELSNQNEELMNNLE 2798

Query: 410  EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
            + K +           +Q +  L   L       +      +D L  E E++   L +  
Sbjct: 2799 KMKSELNDAKMNKEHSDQENETLKKSLEE----NQQNYDQLVDELSKEIEELKKQLLTKA 2854

Query: 470  QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
            ++ N    EI E++      +       +     +    +L+  +  K+ I   ++ 
Sbjct: 2855 EESNSSKHEIDELQSKIQNLSSENENLKSTNNELKQQIESLKNDLQNKDQIVEELTK 2911


>gi|327342909|dbj|BAK09286.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 79

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKG- 59

Query: 697 ISDVICFK 704
            + ++ F 
Sbjct: 60  -AQIVTFT 66


>gi|115889613|ref|XP_781717.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115939950|ref|XP_001183468.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1200

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 90/262 (34%), Gaps = 27/262 (10%)

Query: 273 IPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD---- 323
           + YQ  +++ I+   EL      + +    LE +R +  E  + V   K R  +      
Sbjct: 296 LDYQDNENQRIQFADELETLKFTVERTATDLEAMRRQVNELKKDVEVKKERVENAKRHRG 355

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS-FRMQA 382
            LM  +   +D          ++      +   L  + +E    R     R    +  + 
Sbjct: 356 ELMSKLKSATDQSLSAEEMAAIMDGMLQDEETTLHFLEQELKRLRDLQYKRSQELYEAKT 415

Query: 383 IDRR--VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
            ++    EI  G   A  N+   I  + ++   +  ++     T  Q++       R + 
Sbjct: 416 AEKNTNAEIQ-GARAASRNLSSRINKMDHDSLKQQEIIYNQDFTVQQLE-------RKIA 467

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSG-------KQQWNQIACEIREVKEIFSKSTDLG 493
           +LE  +   E+D L A  +++ + L            Q  ++  +IR VK    KS    
Sbjct: 468 RLEGERSTEEMDMLNARIKELSNFLEERNNTHGLLSNQLKRLQDDIRRVKRDLDKSGAEK 527

Query: 494 RRRTTFCEVSRADKATLQQAMI 515
              T+  E       +  + + 
Sbjct: 528 ADLTSKIEELNLHNDSSNRELK 549


>gi|126311358|ref|XP_001381758.1| PREDICTED: similar to coiled-coil domain containing 18 [Monodelphis
           domestica]
          Length = 1544

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 91/278 (32%), Gaps = 34/278 (12%)

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           +    G  ++    + ++      I+  E   + ++  L EK+A +   + +  L   ++
Sbjct: 393 KERIRGMILKNSEIMSQLSESKQNILKLESALEDKEEILREKLALVNENRELKALIAKQN 452

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
           E     +  +    + L     +E I            +   +   +       +     
Sbjct: 453 ERLILCQREIEDSRQELSS---LEIIISQLPFNREMLNSKTCICKQQEEMFSTKEEFCVS 509

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILK-----------GLLIAYLNIDEIIAIIRNEDK 412
                + V+   S+ R++   +  EI K           G       + E   +   E +
Sbjct: 510 CCELNKSVI---SNLRIKLAMKEAEINKLQTSLSTCQFSGHFFGDDEMQECGKLSGLETE 566

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRK-LEEY---------QIKSELDNLLAEKEKID 462
           P         L+ NQ + I   +L ++ K  E           +++++L    +E  ++ 
Sbjct: 567 P-------VKLSGNQANHIQCQKLHTVSKHFEREKQRLAAGIEELRAKLAKTESENSELK 619

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + +     Q+  I  E+ E    FSK      R+ +  
Sbjct: 620 ADMAHRTSQFQVIQEELLEKVTSFSKMESEMTRKCSQI 657


>gi|259146414|emb|CAY79671.1| Spc105p [Saccharomyces cerevisiae EC1118]
          Length = 917

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 328 SIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGI---LKEWLAHRREVLFRRSSFRMQAI 383
            +    D +  FPLN  N +   R+  V     I   + E  A R + L+R  +      
Sbjct: 471 KLIDDLDKKVNFPLNSFNFVENQRIDNVFSAFYIDIPILEVEAFRCKELWRSINESKDKF 530

Query: 384 DR-RVEILKG----LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +I K     LL  Y + DE +  +  +     + + +              R + 
Sbjct: 531 KDFEAQIDKSHPPLLLQEYFSSDEKMKQLMRD----QLQLVKGYSKLEAAMEWYEWRKKQ 586

Query: 439 LRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L  LE         +K E + L  E EK++S+    ++    I  EIR +K + S S   
Sbjct: 587 LNGLELILAENLNTLKREYEKLNEEVEKVNSIRGKIRKLNEAIKEEIRSLKNLPSDSYKP 646

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
                   E  + +      ++      T
Sbjct: 647 TLMNRIKIEAFKQELMEHSISLSSSNDFT 675


>gi|6321345|ref|NP_011422.1| Spc105p [Saccharomyces cerevisiae S288c]
 gi|1723891|sp|P53148|SP105_YEAST RecName: Full=Spindle pole body component SPC105; AltName: Full=105
           kDa spindle pole component protein
 gi|1322625|emb|CAA96799.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|151943715|gb|EDN62025.1| spindle pole component [Saccharomyces cerevisiae YJM789]
 gi|256269711|gb|EEU04981.1| Spc105p [Saccharomyces cerevisiae JAY291]
 gi|285812113|tpg|DAA08013.1| TPA: Spc105p [Saccharomyces cerevisiae S288c]
          Length = 917

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 328 SIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGI---LKEWLAHRREVLFRRSSFRMQAI 383
            +    D +  FPLN  N +   R+  V     I   + E  A R + L+R  +      
Sbjct: 471 KLIDDLDKKVNFPLNSFNFVENQRIDNVFSAFYIDIPILEVEAFRCKELWRSINESKDKF 530

Query: 384 DR-RVEILKG----LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +I K     LL  Y + DE +  +  +     + + +              R + 
Sbjct: 531 KDFEAQIDKSHPPLLLQEYFSSDEKMKQLMRD----QLQLVKGYSKLEAAMEWYEWRKKQ 586

Query: 439 LRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L  LE         +K E + L  E EK++S+    ++    I  EIR +K + S S   
Sbjct: 587 LNGLELILAENLNTLKREYEKLNEEVEKVNSIRGKIRKLNEAIKEEIRSLKNLPSDSYKP 646

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
                   E  + +      ++      T
Sbjct: 647 TLMNRIKIEAFKQELMEHSISLSSSNDFT 675


>gi|328783026|ref|XP_001119962.2| PREDICTED: hypothetical protein LOC724192 [Apis mellifera]
          Length = 1989

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 68/213 (31%), Gaps = 9/213 (4%)

Query: 314  FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
                ++   + L E I    ++        +         ++     ++E+   +     
Sbjct: 1366 EEVFKAKIVEDLQEEIIKKEELIDVTEPEKSPEIAVESEYMIQEQKEVQEFPEVKEIKEM 1425

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNID------EIIAIIRNEDKPKPVMVSRFSLTENQ 427
                 +++  + ++EI +     +   +      EI      E + K   +    L E +
Sbjct: 1426 EIEQLKLKEPEEQMEIQEPEFKEFEVKEPEIKEPEIKEPEIKEPEIKEPELKEPELKEPE 1485

Query: 428  VDAILNLRLRSLRKLEE-YQIKSELDNLLAEKEKID-SLLNSGKQQWNQIACEIREVKEI 485
            +     ++   +++ E       E +    + ++I+  +  S  ++      EI E++  
Sbjct: 1486 IKE-PEMKESEIKEPEIKESEIKEPEIQEQKIKEIELEIKESEIKESEIKKSEIEELEIK 1544

Query: 486  FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
              +  +   +     E    +    +  + E E
Sbjct: 1545 EPEIKEPEIKEPEIKEPEIKEPEIKEPEIKEPE 1577


>gi|150015830|ref|YP_001308084.1| hypothetical protein Cbei_0944 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902295|gb|ABR33128.1| protein of unknown function DUF710 [Clostridium beijerinckii NCIMB
           8052]
          Length = 654

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 89/256 (34%), Gaps = 19/256 (7%)

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           D+      +   +  +E+          +AR   E +      ++++E     +  +L+E
Sbjct: 310 DYHKCAKELAGHKEKLENQITTNNAITSKAREEKEILKNKITELLLSEEELNKRIKKLLE 369

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           +  EL  + ++      +D +    + +        D +  +  +F  S+ E        
Sbjct: 370 REQELNNSLKLE-----KDNAVRLTKQIQDNNMEKADLNKQINDLFEESEKEITECKQKL 424

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI-DEI 403
                    ++    +L E                +  + +  +IL   +    +  D++
Sbjct: 425 SKLNKENEALVNQIDLLNEEKD--------TLVSEINKLKKEQDILNNEIKNINDTNDKL 476

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              I N D+ K  +     +T N  +     +L+   K    + + E++  + E E++ +
Sbjct: 477 SQEIENSDREKERLEEELKITRNDNE-----KLKGELKEVHEEKEVEVNIKVKEIEEVSN 531

Query: 464 LLNSGKQQWNQIACEI 479
            L S +    +I  E+
Sbjct: 532 TLESKENDLRRIKEEL 547


>gi|207111500|ref|ZP_03245662.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 46

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 568 TDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDS 610
             G+ Y L    +        G+A+  LI L  ++ I+       
Sbjct: 1   NKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKD 45


>gi|15828750|ref|NP_326110.1| hypothetical protein MYPU_2790 [Mycoplasma pulmonis UAB CTIP]
 gi|14089692|emb|CAC13452.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 1099

 Score = 39.4 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 31/222 (13%)

Query: 389  ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL--NLRLRSLRKLEEYQ 446
            I +  L +      ++  I  +   + +      L E +   IL    RLR +++ E+  
Sbjct: 814  IYEAPLTSVSQNSPLLDTITIDSTLEVIKHKESQLKEMKKQEILSREKRLREIKENEKLI 873

Query: 447  IKSELDNLLAEKEKIDSLLNSGK---------------QQWNQIACEIREVKEI-----F 486
             +++ + L   +E++ SLL   K               +    I+ EI+E ++      F
Sbjct: 874  FEAKKEELRRAEERVKSLLEQEKQNYETKKETIKEQEYKVRQLISDEIKEYEQRTKELEF 933

Query: 487  SKSTDLGRRRTTFCEVSR--ADKATLQQAMIEKEPIT--VVISNRGWIRSLKSHSVDLSA 542
            +K     + R    E S    D    ++ +   +  T  V       ++ + S  VD   
Sbjct: 934  AKVELENKLRAQERETSELRDDFQKYKENLENSQRTTQQVYRPQNPDVKPVYSSIVDGQK 993

Query: 543  LHFKEGDSLKIALHAH-----TTDRILLLSTDGKAYTLPAGN 579
            +   + D +      +     TT++  +L +       P   
Sbjct: 994  IKEHDKDGITKTYVINPIENYTTNKKYVLKSKENIEQKPLDE 1035


>gi|190407049|gb|EDV10316.1| hypothetical protein SCRG_01091 [Saccharomyces cerevisiae RM11-1a]
          Length = 917

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 19/209 (9%)

Query: 328 SIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGI---LKEWLAHRREVLFRRSSFRMQAI 383
            +    D +  FPLN  N +   R+  V     I   + E  A R + L+R         
Sbjct: 471 KLIDDLDKKVNFPLNSFNFVENQRIDNVFSAFYIDIPILEVEAFRCKELWRSIKESKDKF 530

Query: 384 DR-RVEILKG----LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +I K     LL  Y + DE +  +  +     + + +              R + 
Sbjct: 531 KDFEAQIDKSHPPLLLQEYFSSDEKMKQLMRD----QLQLVKGYSKLEAAMEWYEWRKKQ 586

Query: 439 LRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L  LE         +K E + L  E EK++S+    ++    I  EIR +K + S S   
Sbjct: 587 LNGLELILAENLNTLKREYEKLNEEVEKVNSIRGKIRKLNEAIKEEIRSLKNLPSDSYKP 646

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
                   E  + +      ++      T
Sbjct: 647 TLMNRIKIEAFKQELMEHSISLSSSNDFT 675


>gi|227890690|ref|ZP_04008495.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227867628|gb|EEJ75049.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 1178

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 298 LEDIRDESAEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +++ ++E  E VR        +++           LS+++ ++  N++ L+  R  +   
Sbjct: 283 IDNEQNELTELVRQEEKISGQQNMSRQEEKFQKERLSELQEQYSANLDNLTEIRTGKQ-S 341

Query: 357 LDGILKEWLAHRREVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +   +      R ++  +       +  +    EIL+ L        +   ++ N +   
Sbjct: 342 VKEKIANLEDDREKLSKKILELEKIIDNVKEPEEILEKLKSELNRKIQEKNLVNNSNNYI 401

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              +     ++NQ +                 I +E + L  + +++ + LN+   ++ +
Sbjct: 402 EQELEE--KSQNQAE----------TNKNIQNITNEKNKLKLQLDELKTTLNNKDNEYQE 449

Query: 475 IACEIREVKEI 485
           I   ++E+K  
Sbjct: 450 IVTTLKELKIK 460


>gi|194208454|ref|XP_001916018.1| PREDICTED: sodium channel and clathrin linker 1 [Equus caballus]
          Length = 661

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 23/211 (10%)

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
           EE        ++ E   +    ++ E I+ L+    I   +++ +        V   +  
Sbjct: 314 EEANLQKNQALLEEKQKEEDIEKMKETISRLVQDATIRTRKEVTN--TRKQYNVQISRLT 371

Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNV---LSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
                L ME       +E        V   L        +      K    H+R ++  R
Sbjct: 372 EELSALQMECAEKQGQVERAIREKKAVEEELDKIYREGRVNESDYRKLEEMHQRCLVAER 431

Query: 376 SSFRMQAIDRRVE--ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
           S   +Q   +  E  I +  + +   I     +I+                  Q      
Sbjct: 432 SKDDLQLRLKTTENKIKQLEINSSEEISRCQEMIQKLQNVLESERENCGFVSEQ------ 485

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                       +++ E + L  E E +  +
Sbjct: 486 ----------RLKLQQENEQLQKEIEDLRKI 506


>gi|301299299|ref|ZP_07205585.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853143|gb|EFK80741.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1178

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 298 LEDIRDESAEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +++ ++E  E VR        +++           LS+++ ++  N++ L+  R  +   
Sbjct: 283 IDNEQNELTELVRQEEKISGQQNMSRQEEKFQKERLSELQEQYSANLDNLTEIRTGKQ-S 341

Query: 357 LDGILKEWLAHRREVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +   +      R ++  +       +  +    EIL+ L        +   ++ N +   
Sbjct: 342 VKEKIANLEDDREKLSKKILELEKIIDNVKEPEEILEKLKSELNRKIQEKNLVNNSNNYI 401

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              +     ++NQ +                 I +E + L  + +++ + LN+   ++ +
Sbjct: 402 EQELEE--KSQNQAE----------TNKNIQNITNEKNKLKLQLDELKTTLNNKDNEYQE 449

Query: 475 IACEIREVKEI 485
           I   ++E+K  
Sbjct: 450 IVTTLKELKIK 460


>gi|289166468|ref|YP_003456606.1| hypothetical protein LLO_3158 [Legionella longbeachae NSW150]
 gi|288859641|emb|CBJ13611.1| hypothetical protein LLO_3158 [Legionella longbeachae NSW150]
          Length = 645

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAI-IRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            +    +++E  +  L      +E I I + + DK K  + +     ENQ   +L  + +
Sbjct: 342 ELDEKSKQLEQFEKTLSDLKIENEQIKIELTDLDKKKIQIDTLSKEKENQAI-LLQQQSQ 400

Query: 438 SLRKLE--EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            L  L+  E     ELD    + E+ +  L+  K +  QI  E+ ++ + 
Sbjct: 401 KLDTLKSKEDATLKELDEKSKQLEQFEKTLSDLKIENEQIKIELTDLDKK 450



 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAI-IRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
            +    +++E  +  L      +E I I + + DK K  + +     ENQ   +L  + +
Sbjct: 269 ELHEKSKQLEQFEKALSDLKIENEQIKIELTDLDKKKIQIDTLSKEKENQAI-LLQQQSQ 327

Query: 438 SLRKLE--EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            L  L+  E     ELD    + E+ +  L+  K +  QI  E+ ++ + 
Sbjct: 328 KLDTLKSKEDATLKELDEKSKQLEQFEKTLSDLKIENEQIKIELTDLDKK 377


>gi|118381493|ref|XP_001023907.1| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|89305674|gb|EAS03662.1| Protein kinase domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2944

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 90/263 (34%), Gaps = 46/263 (17%)

Query: 260  EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
            E  +   C    E+ +     +  +++A+    K +     +  E+    + +    N  
Sbjct: 2675 ENNKEKICQKTPELFHPKTVEKYDKEMAQFNEQKALLQKIILNKENQISKQEISIANNLK 2734

Query: 320  LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD-----------GILKEWLAHR 368
            +  D   + +F L     ++  N   +S  +    M  +            I +E +  +
Sbjct: 2735 VIDDKFQKKVFKLESANKKYEQNYLQISELQQQIYMLQEQIEKLKQETNIDITQEEVLQQ 2794

Query: 369  REVLFR---RSSFRMQAIDRRVEILKGLLIA------------YLNIDEIIAIIRNEDKP 413
            +E   R   + +  ++   + +     L ++               ++    ++++    
Sbjct: 2795 KEERRRASVQQTHELEKYQKDLLSQIRLFLSADLFSEHEKLENIRFLEMKNNLMKSYHTE 2854

Query: 414  KPVMVSRFSLTENQVDA---ILNLRLRSLRKLEEYQ---------------IKSELDNLL 455
            K        L + Q D    + N + + L KL+E +               ++ E +NLL
Sbjct: 2855 KKRSDFIEQLQQMQKDYQIKLKNEKQKHLEKLQEKENEYQKELINNEYSLLLQKEYENLL 2914

Query: 456  AEKEKIDSLL-NSGKQQWNQIAC 477
             E E + +LL +S ++    I  
Sbjct: 2915 KEIE-LKTLLKDSYEKIKKLIID 2936


>gi|297675427|ref|XP_002815685.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor TFIIIB component
            B'' homolog [Pongo abelii]
          Length = 2514

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 113/376 (30%), Gaps = 24/376 (6%)

Query: 213  SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
              EK+L+ I        G+    RE       +             EE+ +        E
Sbjct: 883  PREKILDVIDVTMEMETGLKATGRE-------ICLREKTPEVIDATEEIDKDLEETGRRE 935

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332
            IP Q      ++ + E+    +    E    E   +V       +++L+     +     
Sbjct: 936  IPPQKNGPEEVKPLGEMETDLKATGNESSPREKTPEVTDATEEIDKNLEETERRKISPRE 995

Query: 333  SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
            +  E   P++     +    +         E +    E+    +   +   +  +E +K 
Sbjct: 996  NGPEEVKPVDEMETDLKATGRESSPREKTPEVIDATEEIDLEETEREISPQENGLEEVK- 1054

Query: 393  LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE-------- 444
                   ++  +     E  P+          E  ++  L    R +   E         
Sbjct: 1055 ---PVDEMETDLKATGRESSPREKTPEVIDAVEV-IEIDLEETEREISPQENGPEEVKPV 1110

Query: 445  YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +++++L  +  E  + + +L        +        K        +  +     E+  
Sbjct: 1111 GKMETDLKEIREEISQREKVLAEISAIREKEIDLKETGKRDIPMMEKVSGKMAVVEEMEA 1170

Query: 505  ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564
              K T ++   E+    + ++     +  +      + +  +E   L+    +  TD  L
Sbjct: 1171 DLKETGRENFRERGSEEICVTEE---KVAELKKTGKTDISPREN-ELEETSTSRQTDTHL 1226

Query: 565  LLSTDGKAYTLPAGNL 580
            + S+      +P+ ++
Sbjct: 1227 MQSSSNDCSAMPSLDI 1242


>gi|281345805|gb|EFB21389.1| hypothetical protein PANDA_006354 [Ailuropoda melanoleuca]
          Length = 596

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 9   HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 60

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 61  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 112

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 113 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 149


>gi|62740095|gb|AAH94096.1| LOC733209 protein [Xenopus laevis]
          Length = 1713

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 270  VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
            + +      +     KI +  ++++   LE     + E  + +L  +  +       E +
Sbjct: 1165 INKSDATKNELVEQNKILKTALSEKDKNLEVHLTATEECRKSILELEQHNQQLLNEKEHL 1224

Query: 330  FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
                  + +F           + + + +       L  + E+       ++  ++ RV  
Sbjct: 1225 AKELSEQKQF--------YDDLKKELNIKEENSLCLQQKLEMDINNRDEKLTVLEERV-- 1274

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR-SLRKLEE---- 444
                L     +DE +  I N +  K  +  R  + E    A     L   L K EE    
Sbjct: 1275 ----LELQKQLDEELENIHNLNTAKDELDKRNKILEV-ALAEREKNLSVHLNKTEECRKH 1329

Query: 445  -YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
               ++ +   L +EKE +   L   KQ  + +  E++  ++ 
Sbjct: 1330 ILDLEQQKQQLYSEKEHLVEELAKQKQCCDHLTAELQATEQK 1371


>gi|145479811|ref|XP_001425928.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393000|emb|CAK58530.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1360

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 79/247 (31%), Gaps = 12/247 (4%)

Query: 285 KIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
           ++ + + + +  L    +  S   +      K R        ++  +L     ++  N +
Sbjct: 420 QLEKQLNSVQKELQNSQKGLSESMLESYKAKKQRDQIMKQFQDAKKILQKYNIQYNFNED 479

Query: 345 VLSMGRVPQVMPLDGILKEW---------LAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
                   ++  L  +++E             +     RR    ++     +  ++    
Sbjct: 480 QQMDTYYNEIASLKKVVQEQEQRIFLLQSNNDQLLKEARRDQKLLRQKQHELMRIEKQKQ 539

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
               ID+   +  +E   K + +        ++D I    ++ L + ++     ++  L 
Sbjct: 540 DVDQIDDDFELNDSELIEKDLQIEEQEQQLQELDKIKIETIQ-LLQDDKQNYLKQISILE 598

Query: 456 AEKEKIDSLLNS--GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
            EK K+   LN+     Q N +  +I+E +                 +     +  +++ 
Sbjct: 599 EEKAKLQKQLNNKQDSAQMNSLKFKIQEYETKILDMRQKEMTSKQLQKKLEDQECQVKEL 658

Query: 514 MIEKEPI 520
               E +
Sbjct: 659 RTNIEQM 665


>gi|332665710|ref|YP_004448498.1| Unspecific monooxygenase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334524|gb|AEE51625.1| Unspecific monooxygenase [Haliscomenobacter hydrossis DSM 1100]
          Length = 448

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 28/210 (13%)

Query: 283 IEKIAELIIAKR-----IPLLEDIRDESAEDVRIVL---FPKNRSLDPDLLMESIFMLSD 334
           I ++  LI + +     I +++    E     R  +    P   + DP  +   +     
Sbjct: 8   IPRLKTLITSLKFLRDPITVIKGNLAEYGHTYRFYIGGIIPATFTADPAFIQHILQKNHR 67

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM-------------Q 381
           M  + P++   L       ++ +DG    WL  RR +       R+             +
Sbjct: 68  MYKKSPIHFEHLGHFVGKGLLTIDGD--HWLRQRRLIQPSFHRSRLANLTHLMNEVIVER 125

Query: 382 AIDRRVEILKG-LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
                 EI +G + +A   +D    II        V   +     +Q+  I    ++   
Sbjct: 126 RAKFGQEIQQGPVNMAEHMMDMAFNIIMRSIFSVSVPEEQVRKMSDQITQIQAFVIQ--- 182

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            L      +    L  + ++ + +    +Q
Sbjct: 183 -LIRQPYLNWWRKLSGKIKEHEDIAADLEQ 211


>gi|291413034|ref|XP_002722776.1| PREDICTED: restin isoform 1 [Oryctolagus cuniculus]
          Length = 1423

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 29/243 (11%)

Query: 278 QKSRLIEKIA---ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
            KS+L   IA   + +   ++   + +  ESAE   +    +   LD    +E +    D
Sbjct: 608 WKSKLETAIASHQQAMAELKVSFTKGLGTESAEFAELKAQIEKVRLDYQHEIERLQSQQD 667

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEW-------LAHRREVLFRRSSFRMQAIDRRV 387
            E             ++ +V+       E           +  V    +  R+Q  + +V
Sbjct: 668 SERSAHAKEVDALRAKLLKVIKEKEDSLEALKSKLDRAEDQHLVEMEDTLNRLQEAETKV 727

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------VSRFSLTENQVDAILNLRLR 437
           + L+ L        E+I    ++ K                S       Q+   L    +
Sbjct: 728 KELEALRARCSEQTEVIDNFASQLKATEEKLLDLDALRKASSEGKSEIQQLRQQLEAAEK 787

Query: 438 SLRKLEEYQ---------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            ++ LE  +         I  EL     +   ++  L+   +    +  E+R +KE F+ 
Sbjct: 788 QIKNLEIEKDAESGKASGIARELQEKELKLTTLEENLSGVSRVKEALETELRVLKEKFAD 847

Query: 489 STD 491
           +++
Sbjct: 848 ASE 850


>gi|90961603|ref|YP_535519.1| chromosome partition protein [Lactobacillus salivarius UCC118]
 gi|90820797|gb|ABD99436.1| Chromosome partition protein [Lactobacillus salivarius UCC118]
          Length = 1178

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 298 LEDIRDESAEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +++ ++E  E VR        +++           LS+++ ++  N++ L+  R  +   
Sbjct: 283 IDNEQNELTELVRQEEKISGQQNMSRQEEKFQKERLSELQEQYSANLDNLTEIRTGKQ-S 341

Query: 357 LDGILKEWLAHRREVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +   +      R ++  +       +  +    EIL+ L        +   ++ N +   
Sbjct: 342 VKEKIANLEDDREKLSKKILELEKIIDNVKEPEEILEKLKSELNRKIQEKNLVNNSNNYI 401

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              +     ++NQ +                 I +E + L  + +++ + LN+   ++ +
Sbjct: 402 EQELEE--KSQNQAE----------TNKNIQNITNEKNKLKLQLDELKTTLNNKDNEYQE 449

Query: 475 IACEIREVKEI 485
           I   ++E+K  
Sbjct: 450 IVTTLKELKIK 460


>gi|322376802|ref|ZP_08051295.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334]
 gi|321282609|gb|EFX59616.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334]
          Length = 1179

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---ATIASDKQNLEAEIEEIKSNKNAIQERYQNLQEEVAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   +K+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDIEQEEIQRLLQEKVDNIEKVDTELLSQQAEEAKNQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    K++ L   NL     +   +AI+ L  +N + 
Sbjct: 937 SQLTDQYQISYTEALEKSHELENLNLAEQEVKDLEKAIRSLGPVNFDA 984


>gi|123497158|ref|XP_001327118.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910043|gb|EAY14895.1| hypothetical protein TVAG_380050 [Trichomonas vaginalis G3]
          Length = 2499

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 55/148 (37%), Gaps = 2/148 (1%)

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
            P++        +  +  +   ++     ++  +           +   +  +        
Sbjct: 1701 PVDTVTAIRSEIITLQSMVDTMRADRDMQKNKVIELEDQISAKEEAMRQDTERYENLLQE 1760

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
             + +   +R +D+    +     L   + + + N +L    +L+  +     + LL + +
Sbjct: 1761 KEALEKQVRKQDE--QALFHESDLETMKAEKLANEQLGMKNRLQLEEAIGNNEKLLTKIK 1818

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFS 487
            +++  + + K++  Q+  E+ +++  +S
Sbjct: 1819 ELEDTIRNQKKEIGQVKNELEDLQIKYS 1846


>gi|4006911|emb|CAB16841.1| trichohyalin like protein [Arabidopsis thaliana]
 gi|7270600|emb|CAB80318.1| trichohyalin like protein [Arabidopsis thaliana]
          Length = 1432

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 23/275 (8%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A L   ++   +++ R E AE+ R  +  + ++     + E   +   ++  F       
Sbjct: 666 AALEQEEKERKIKEAR-EKAENERRAVEAREKAEQERKMKEQQELELQLKEAFEKEEE-- 722

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           +              +     R +    R   R++    + E+ + L       ++   I
Sbjct: 723 NRRMREAFALEQEKERRIKEAREKEENER---RIKEAREKAELEQRLKATLEQEEKERQI 779

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              +++ +    ++  L   Q +    L+  +L + E  +   E       K+K+   + 
Sbjct: 780 KERQEREENERRAKEVL--EQAENERKLK-EALEQKENERRLKETREKEENKKKLREAIE 836

Query: 467 SGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
             +++   I A E  E++    +  +    R    E    ++   +    ++        
Sbjct: 837 LEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRLQEAKERERLHRENQEHQENE------ 890

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                   K H         KE D+ ++     TT
Sbjct: 891 -------RKQHEYSGEESDEKERDACEMEKTCETT 918


>gi|120598370|ref|YP_962944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120558463|gb|ABM24390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 1436

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 585 GHGEAIQLLIDLNHNQDI----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640
           G    ++L+ +L+  ++I    VT     ++  ++  +S G  F ++  EI         
Sbjct: 390 GSSNGVKLINNLDVEENITSEKVTTLNKINSNNIIAGTSDGKVFFIQNREIYH------- 442

Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670
            L +  E+ +  V+ ++ D++ +  +N   
Sbjct: 443 ILSLEKEDPIFEVLYISKDNIFIASQNGMY 472


>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
 gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
          Length = 365

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 78/228 (34%), Gaps = 21/228 (9%)

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR-----FPLNMNVLSM 348
           ++        E  +  + +   K+R L   +L+      +   +         +    + 
Sbjct: 78  KLEFKTHQVSEDGDTEKFLFELKDRRLIESVLISHKNRHTLCVSSQIGCLIGCDFCATAT 137

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
               + + +  IL ++   ++ +L R              +  G+   +LN D ++  I 
Sbjct: 138 MTYERNLSISEILLQYYYVQKHLLQRGEKL-------GNVVYMGMGEPFLNYDAVLGSIN 190

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468
             + PK    S+ + T      I+N  ++     E     +   +L + K+ + S +   
Sbjct: 191 MLNSPKGQNFSKRNFT-ISTSGIVN-GIKRFT--ENENQINLAISLHSVKDDVRSEIMPI 246

Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
            ++W     +++E    + K T     R TF  +   D     +   E
Sbjct: 247 NKRWGV--KQLKESLLEYQKQTK---NRITFEYILIDDLNCEPEDARE 289


>gi|194749087|ref|XP_001956971.1| GF10188 [Drosophila ananassae]
 gi|190624253|gb|EDV39777.1| GF10188 [Drosophila ananassae]
          Length = 656

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 237 RRWIEKENKAARIKRKKEEMGRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 296

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +    R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 297 AQ-----KAEQDRAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKILKKERKILRDKVK 350

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 351 DCKYYAKN 358


>gi|145494965|ref|XP_001433476.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400594|emb|CAK66079.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1547

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 79/215 (36%), Gaps = 16/215 (7%)

Query: 275 YQVQKSRLIEKIAELIIAKRI--PLLEDIRDESAEDVRIVLFPKN-------RSLDPDLL 325
           +Q Q   L +K+ +L+        L++ +++E  E  + +   K        ++++    
Sbjct: 617 FQDQDKDLSDKLKKLMNENENNSKLIQQLQNEKLELEQQIEELKKLLSQYEQQTIEFQKE 676

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD-----GILKEWLAHRREVLFRRSSFRM 380
            + +    +        + +L+         LD       LKE  +    V   +     
Sbjct: 677 KQQLLQKIEEIQNDKTEVQLLNAEIEKLKADLDSKKNYDELKEMASQINTVYEEKVQLEK 736

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           Q  + ++++ K         D+  A + N+ K    + ++F     Q   I   +++ + 
Sbjct: 737 QKNELQIQLNKTTEELKEWKDKY-AKLENDKKNSDALYAQFKERSEQQQEIYLTQIKGME 795

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
           K + +Q+  E    L + + ++  L +  +    I
Sbjct: 796 K-KNFQLNEEYQKCLDKIDILEEALQNQSKDIKII 829


>gi|302392423|ref|YP_003828243.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM
           5501]
 gi|302204500|gb|ADL13178.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM
           5501]
          Length = 1188

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           +  +   EI    +       E   + +  D+ +  +    S   N+   I  LR R  +
Sbjct: 809 KKEEYNEEITDIKVKIASIEQEKNNLKQEADRLQDQIQKAESGISNKKSEIEELRKRKEK 868

Query: 441 KLEEY-QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTT 498
             ++    + + + L  +K+++++ L   K++   +  EI+E+KE       +L   +T 
Sbjct: 869 LADQKIDFREDQNELKQQKKELEAKLADLKEKKEGLTAEIKEIKEKSQGIRKELEEIQTE 928

Query: 499 FCEVSRADKATLQQAMIEKEPIT 521
             E    +     +    +E + 
Sbjct: 929 HNEYEVKEAQLEMELESIEEKLV 951


>gi|297275468|ref|XP_001099481.2| PREDICTED: coiled-coil domain-containing protein 102B-like [Macaca
           mulatta]
          Length = 482

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 78/239 (32%), Gaps = 25/239 (10%)

Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300
           + Y   R     R     E+       +V+  +           K++E +    +  ++ 
Sbjct: 178 QMYESIRECLVKRQFSTKEDTNNKEEGVVIDSL-----------KLSEEMKPN-LDGVDL 225

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             +  + +  +    + ++++   L   +  +S ++        +L   R  +      I
Sbjct: 226 FNNGGSGNGEMKAGLRLKAINL-PLENEVTEISALQVHLDEFQKILWKEREMRTALEKEI 284

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------- 413
            +   A    +   +  +      +   + +  +    + DE+  +  N  +        
Sbjct: 285 ERLESA----LSLWKWKYEELKESKSEHVKEFDICLVQHNDEMEELSGNVKEESKSQNSK 340

Query: 414 -KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
            + +   R  L   Q +       R + + E+  ++ E   L  + ++++ LL+   + 
Sbjct: 341 DRVICELRAELERLQAENSSEWDKREILETEKQGLERENRWLKIQVKEMEELLDKKIRL 399


>gi|153806729|ref|ZP_01959397.1| hypothetical protein BACCAC_01000 [Bacteroides caccae ATCC 43185]
 gi|149131406|gb|EDM22612.1| hypothetical protein BACCAC_01000 [Bacteroides caccae ATCC 43185]
          Length = 705

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 84/261 (32%), Gaps = 29/261 (11%)

Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329
           +   P   +  +LI+K +E      +        E+             S +    ++  
Sbjct: 85  LKNSPNGNEILKLIDKSSEDKTVSNLEKYMRPHKENYIYGLFYYIHPFYSYNALKNIKVQ 144

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
             L+        + +   +      + +D  ++E+   R     +   +  + + R  + 
Sbjct: 145 RRLTSDLLDISYSSSDPGIAYNTVSILMDEFVEEYRRIRYGETDKVIKYFDEELKRIGKK 204

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLEEYQ- 446
           L          +    +I   D+ K    +   ++L E      LN     L +LE +  
Sbjct: 205 LSTEEEDLTKYNVEKRVINYLDETKEIAAINKEYALREQDAMFALNSSRSMLDELERHMD 264

Query: 447 --------------IKSELDNLLAEKEKIDSL----------LNSGKQQWNQIACEIREV 482
                            E  ++     +++++          LN+ K++ +++  E+ E+
Sbjct: 265 SNAKQIIKNMEFVGKIKEASDITGRISEVEAMSDSNNKDITALNNNKKRLSELKKELSEL 324

Query: 483 KEIF--SKSTDLGRRRTTFCE 501
            + +   K +  G  RT   +
Sbjct: 325 TDAYVGHKYSKEGVLRTNIID 345


>gi|118350817|ref|XP_001008687.1| hypothetical protein TTHERM_00170270 [Tetrahymena thermophila]
 gi|89290454|gb|EAR88442.1| hypothetical protein TTHERM_00170270 [Tetrahymena thermophila
           SB210]
          Length = 471

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 79/214 (36%), Gaps = 16/214 (7%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML-SDME 336
            K + I+ + +    + I  ++   +E+    ++V+  K  + +  +    +       E
Sbjct: 109 NKDKYIQDLKD--ENQLIQSMQQEMEETVRKFKLVMQEKEYTYNEQIKSLKLENERLQQE 166

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396
                  + L+  R      L   L E   H +E++       +     ++   +  ++ 
Sbjct: 167 IEISKVDSELTKTRSQNYEELSKSLIELKKHNQELVQ-----ELTKEQEQISQSELFILC 221

Query: 397 YLNIDEIIAII-----RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
                +   +I     +  ++ K +      L + Q +   + +L    K +E +    +
Sbjct: 222 QQKNFKNEKVIAELKNQQVEQKKQLDSKLKQLNDKQSEQ--SFQLEDF-KEKEKEYLKSI 278

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           + L   K+ ++  + S K+Q   +  EI+ +KE 
Sbjct: 279 EELQKSKKDLEKKIKSSKEQKKLLEQEIKLIKER 312


>gi|78057970|gb|ABB17352.1| GABA-B receptor-interacting scaffolding protein [Rattus norvegicus]
          Length = 1115

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           +Q  DRR             I+++ A I      + + + R    E     +L+  L+  
Sbjct: 293 LQKADRR--------SLLTEIEDLRAQING----RKMTLEREQEIEKPSQELLDCNLQQK 340

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           +     +++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 341 QS-HVLEMQLELGSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 399

Query: 500 CEVSRADKATLQQAMI 515
            E  R++       + 
Sbjct: 400 LEAFRSEIKEKTDEIH 415


>gi|21284200|ref|NP_647288.1| hypothetical protein MW2471 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487329|ref|YP_044550.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|297209624|ref|ZP_06926021.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910637|ref|ZP_07128088.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827786|sp|Q6G6C4|FEOB_STAAS RecName: Full=Ferrous iron transport protein B
 gi|81847764|sp|Q8NUR5|FEOB_STAAW RecName: Full=Ferrous iron transport protein B
 gi|21205643|dbj|BAB96336.1| feoB [Staphylococcus aureus subsp. aureus MW2]
 gi|49245772|emb|CAG44252.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|296885763|gb|EFH24699.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888160|gb|EFK83354.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329730226|gb|EGG66616.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 664

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+  + V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVDKQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|241952202|ref|XP_002418823.1| kinesin-like protein, putative [Candida dubliniensis CD36]
 gi|223642162|emb|CAX44129.1| kinesin-like protein, putative [Candida dubliniensis CD36]
          Length = 679

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 25/255 (9%)

Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
           +  +   ++   L   +   +        N   L        + +  +       +  + 
Sbjct: 78  IDLEQLKINATTLRNELEKQTYENFTIQSNYQNLERILNDLNLKIGELNSYK---QSSLD 134

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------PVMVSRFSLT 424
               +F +     ++   + L     +I + +  I  E + +           + +    
Sbjct: 135 ALIKNFELNNHQLKLNHQEKLNNLKEDITKQVDKILTEKQHRYEVEISNLNKEIEKIKSD 194

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQ 474
               ++ LN   R L +L+E Q K EL          DN+  E E I+SLL+S  +Q   
Sbjct: 195 TKGCESDLN---RKLIQLKEDQHKQELMMIGQVNDDIDNMKREIENINSLLDSKSKQIEF 251

Query: 475 IAC-EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
           +   EI+       K T L  + T+  +  + + + L++ +   +     I  +   R+ 
Sbjct: 252 MESVEIKTAANKLDKFTSLLDQLTSKNKSKQEEISALEKKVATTKESVNAILEKSTDRTS 311

Query: 534 KSHSVDLSALHFKEG 548
           K H +       K  
Sbjct: 312 KVHRLQFEVGRMKTE 326


>gi|118354193|ref|XP_001010359.1| IQ calmodulin-binding motif family protein [Tetrahymena
           thermophila]
 gi|89292126|gb|EAR90114.1| IQ calmodulin-binding motif family protein [Tetrahymena thermophila
           SB210]
          Length = 737

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 10/195 (5%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           + KIA+L   +R+  ++   +ES    R V   K R +D    +  +   +D + R    
Sbjct: 25  LSKIAQL--NERVKTIQTNFEESRAAKREVFQNKMRYVD--DRINKVEQQNDQKFRLLAE 80

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
                     Q      I        +E+     +F +       E  +        IDE
Sbjct: 81  QLNKIQEEANQETLAKEI--HSEKRLKEIKLLDKNFSINISKEHQEKKENETKMLRQIDE 138

Query: 403 IIA--IIRNEDKPKPVMVSRFSLTENQVDAILNLRLR--SLRKLEEYQIKSELDNLLAEK 458
            I    I      K         T    + + +LR +    +K+ +   ++ +     E 
Sbjct: 139 KIQEMKIELFRDRKKREDYEVYKTSEIENRVNDLREQFEQEKKIRDEVSENLIKTFGEEI 198

Query: 459 EKIDSLLNSGKQQWN 473
            K   LL   K+   
Sbjct: 199 LKFQDLLRQEKKIRE 213


>gi|72163232|ref|YP_290889.1| hypothetical protein Tfu_2833 [Thermobifida fusca YX]
 gi|71916964|gb|AAZ56866.1| putative secreted protein [Thermobifida fusca YX]
          Length = 748

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 19/322 (5%)

Query: 210 PEISIEKLLEY-IIGPDFPTGGII-VESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267
           P +   ++++  +   +    G   +  R++I    R+    F VR    VE+V + +  
Sbjct: 58  PVLHKAEVMDISVKTIEISRMGKDGLICRDNIRADIRIT---FFVRVNKTVEDVIKVAQA 114

Query: 268 IVVTEIPYQVQKSRLIE-KIAELIIA-KRIPLLEDIRDESAEDVRIVLFPKNRSLD---- 321
           I       Q     L   K +E +    +    ED+  + AE    ++      L+    
Sbjct: 115 IGAERASDQATLQELFNAKFSEALKTVGKHLDFEDLYTKRAEFRDRIISVIGTDLNGYIL 174

Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
            D+ ++ +   + +    P N+      R    +  +  ++    HRR          ++
Sbjct: 175 EDVAIDHLE-QTPLSQLDPHNILDAQGIRKITELTTEQNIR-TNEHRRNEEKEIERQNVE 232

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
           A +  +++ +    A       I  +R + + +  +V    L   ++  I   R      
Sbjct: 233 AREAILKLGRRRTEAETRQKREIETMRAQAEAETEIVRAEELLRAEMARI---RTEQELG 289

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSG---KQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           ++    + E+      +E++ ++        +    IA E       ++K  +L   R  
Sbjct: 290 VQRENREREIAVAAKNRERVLAIETERIEKDRLLEVIARERETELSRYAKDKELEVERRQ 349

Query: 499 FCEVSRADKATLQQAMIEKEPI 520
             EV R   A  +    ++E I
Sbjct: 350 IAEVVRERVAVERTVAEQEESI 371


>gi|124004641|ref|ZP_01689485.1| serine/threonine protein kinases [Microscilla marina ATCC 23134]
 gi|123989764|gb|EAY29293.1| serine/threonine protein kinases [Microscilla marina ATCC 23134]
          Length = 847

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 65/188 (34%), Gaps = 14/188 (7%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           ++++ +   + + +IL+          E +  I    + K   +   +      + +L  
Sbjct: 486 KTTYLLMEAEEQKDILQAQEEEMRQNVEELRSIHEVMEKKQKELELQNQRIKSSELVLKK 545

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            L+ L                 E E+ + +L++ +++  Q   E+   +E  +  +    
Sbjct: 546 ALKQL------------GEQKIELEETNEILHAQEEEMRQNVEELISTQEALALKSKNLE 593

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--RSLKSHSVDLSALHFKEGDSLK 552
            +  F   S      +QQA++      + +   G++  R     S D   L   EG  + 
Sbjct: 594 HQNKFITTSIYYAQNIQQAILPSREDLLSLLKGGFVIYRPKDIVSGDFYWLSRVEGKVIV 653

Query: 553 IALHAHTT 560
            A+     
Sbjct: 654 AAVDCTGH 661


>gi|118365293|ref|XP_001015867.1| Protein kinase domain containing protein [Tetrahymena thermophila]
 gi|89297634|gb|EAR95622.1| Protein kinase domain containing protein [Tetrahymena thermophila
            SB210]
          Length = 2322

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 71/215 (33%), Gaps = 21/215 (9%)

Query: 316  KNRSLDPDLLMESIFMLSD----METRFPLNMNVLSMGRVPQVMP-LDGILKEWLAHRRE 370
            K    +  +++E    L             N+         +       +  E+   +R+
Sbjct: 1653 KEIEANQKVILEKYSQLEQNSMKQRESIKKNIEFTVQQLQQEYETKQKDLFSEFEKKQRQ 1712

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------KPVMVSRFSLT 424
               R     M+ I+     + G++     + E  + ++           + +        
Sbjct: 1713 FEERIRQKEMEKIENENMDVSGIMKQKYEMQEQYSFLQENYSALQTEQEEKIKKLEAEYK 1772

Query: 425  ENQVD-----AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
            + Q +     +IL  + +SL K +E   K     L  + E++    +  +Q+++++  E 
Sbjct: 1773 KKQAELEREQSILKEKTKSLEKGQEGLYKRWQQELQEKNEELK---SDYEQKYDELKEEF 1829

Query: 480  REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             + +  F K   L  R +T            ++ +
Sbjct: 1830 EKKQLEFEK--KLRERESTKRREFEYRLQEKEEEI 1862


>gi|328496455|gb|AEB21377.1| DNA polymerase [Abalone herpesvirus Taiwan/2004]
          Length = 1926

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
              IP   V +   A     +  +      +     P+   G   V   ++     RL + 
Sbjct: 1077 CRIPPPRVSDEELAKFYDGEANQYRKVLRMGPYKNPEPMEGDEDVYDPDTHGPMNRLSKK 1136

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD----- 303
             FR R  W   ++ +      +TE+    +   + E I + I   + P ++ + D     
Sbjct: 1137 LFRER--WDKGDMPK------ITEL--MGEMFSVYEDIMDEINNGK-PGIKALWDKPTSL 1185

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            E  + +   +FP  +     ++    F +S +   F    + ++  ++   +    +L E
Sbjct: 1186 EIEKMMFAEIFPCKKVYAARMVEPETFNMSPIVRGFACKKSDMTKMKLIVQLGSVQMLSE 1245

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
                        + F  +A       L+  +IA   +DEII  ++ E +          L
Sbjct: 1246 N------DFDGFAQFVEEAYSTVFVGLRARMIAEARVDEIIKDVQPEVEAMREPGYCDFL 1299

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                 +  L ++L+ L KL   +++ E D+   E   I  
Sbjct: 1300 KREIEEEEL-MKLQRLSKLARKRMR-EFDDADQENAIIKK 1337


>gi|294774600|ref|NP_001171042.1| coiled-coil domain containing 162 [Mus musculus]
          Length = 722

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 77/213 (36%), Gaps = 16/213 (7%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           +++ +L+ +  I +++++  +   ++ + L  K++      L    +    M+  F +  
Sbjct: 176 QQLQKLLESLEIHMIQEVLRKVNREMTLFLSEKSKEES--TLPTDRWKHQVMKENFSVMR 233

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRR------------EVLFRRSSFRMQAIDRRVEILK 391
             +    V ++M         +  RR            +V+ R  S           IL+
Sbjct: 234 PQIVERFVQRLMEDSQDDGPKITFRREHLEACILSLGCDVMARERSNFETYSMCYEHILQ 293

Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRF-SLTENQVDAILNLRLRSLRKLEEYQIKSE 450
                    ++ + ++R    P      +   L+ + +  I  LR   L  LEE  +  +
Sbjct: 294 HTRQKLSQKEQEVDLLRRSQVPSEDCAGQVAELSHDMIMEITALR-AQLTDLEEENLNLK 352

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
           +      +E+   L+ +      +I  ++ E +
Sbjct: 353 IQIRKEVQEEYRELVQALFLTCLRIKEKLDENQ 385


>gi|171678847|ref|XP_001904372.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937494|emb|CAP62151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1520

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
           +ID  +  +      +   +   +  E + +A     LR   + E   ++ E D    E 
Sbjct: 813 DIDAAMNDLMALQAERDEALQEHANLEAEFEA-----LRKEAQEEIDALEGEADQRTGEI 867

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKE---IFSKSTDLGRRRTTFCEVSRAD 506
           E++   LN   + ++ +  E+R++ +         +   RR +  E    D
Sbjct: 868 ERLQLDLNDRTENFDALQEEMRKMSDALVRLEDEQESKIRRISQLEQELGD 918


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 91  DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126
           D S+YD+LVRLAQP+  R PL+    NFG    D A
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDPA 36


>gi|313665382|ref|YP_004047253.1| chromosome segregation protein SMC [Mycoplasma leachii PG50]
 gi|312949476|gb|ADR24072.1| chromosome segregation protein SMC [Mycoplasma leachii PG50]
          Length = 988

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 86/219 (39%), Gaps = 18/219 (8%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R +  R    R++ I+   +I K      +N DE+  II  + +    +    +   + V
Sbjct: 238 RVLSNRIEELRIEKIEYETQIKKLTNEINMNQDEVNLIIDKDAEDNQKLSELNTKFNSLV 297

Query: 429 DAILNLRLRSLRK-LEEYQI-----KSELDNLLAEKEKIDSLLNSGKQQWNQIACE--IR 480
             I NL++R  +  L+E +      + E    L +K+  +  ++   ++      E  + 
Sbjct: 298 QKIANLKVRKQKAELKEQENLNTKDQDEYKATLIKKQFDEKQISIKSEKDKITKAEDSLL 357

Query: 481 EVKEIFSKSTDLGRR--RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538
           E+KE +   T       R      +   +  +Q   IE    T + S +  I ++ ++  
Sbjct: 358 ELKEKYDYYTSKYNEIYREIETIRTAISRINIQLETIEHRKKTALNSYQDAISAILNNQK 417

Query: 539 DLSA--------LHFKEGDSLKIALHAHTTDRILLLSTD 569
            +S         ++ KE   + I++ A      L++ TD
Sbjct: 418 QISGVIGVLKTLINVKEEYQIAISVTASGHMNSLVMKTD 456


>gi|300249600|gb|ADJ95314.1| DNA polymerase [Abalone herpesvirus Victoria/AUS/2007]
          Length = 1926

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 24/280 (8%)

Query: 189  TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
              IP   V +   A     +  +      +     P+   G   V   ++     RL + 
Sbjct: 1077 CRIPPPRVSDEELAKFYDGEANQYRKVLRMGPYKNPEPMEGDEDVYDPDTHGPMNRLSKK 1136

Query: 249  GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD----- 303
             FR R  W   ++ +      +TE+    +   + E I + I   + P ++ + D     
Sbjct: 1137 LFRER--WDKGDMPK------ITEL--MGEMFSVYEDIMDEINNGK-PGIKALWDKPTSL 1185

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
            E  + +   +FP  +     ++    F +S +   F    + ++  ++   +    +L E
Sbjct: 1186 EIEKMMFAEIFPCKKVYAARMVEPETFNMSPIVRGFACKKSDMTKMKLIVQLGSVQMLSE 1245

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
                        + F  +A       L+  +IA   +DEII  ++ E +          L
Sbjct: 1246 N------DFDGFAQFVEEAYSTVFVGLRARMIAEARVDEIIKDVQPEVEAMREPGYCDFL 1299

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
                 +  L ++L+ L KL   +++ E D+   E   I  
Sbjct: 1300 KREIEEEEL-MKLQRLSKLARKRMR-EFDDADQENAIIKK 1337


>gi|289809152|ref|ZP_06539781.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 34

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
            +IP HN+ E+    LA IDN +ISIE L+E+I 
Sbjct: 1   RNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIP 34


>gi|311250207|ref|XP_003124000.1| PREDICTED: kinesin-like protein KIF20A-like [Sus scrofa]
          Length = 890

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
                 E  + L +     DEI   +  + + +    S    T  Q + +  +    L  
Sbjct: 571 KALLLKERQEKLQLEMHLRDEICNEMVEQMQQREQWCSEHLDT--QKELLEEMYEEKLTI 628

Query: 442 LEEYQ---IKSELDNLLAEKEKIDSLLNSGKQQ 471
           L+E      + EL     + E++++LL   ++Q
Sbjct: 629 LKESLTSFYQEELQERDEKIEELEALLQEAREQ 661


>gi|308159941|gb|EFO62455.1| Protein 21.1 [Giardia lamblia P15]
          Length = 834

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 31/249 (12%)

Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI---EKIAELII-A 292
            S+   Y + +     + R    E        V  +  YQ  +++L    E + EL    
Sbjct: 246 NSLELMYEVAKRDLEDKCR----EYENLKEDFVTLQNEYQDVRNQLRIMSESVEELTNPN 301

Query: 293 KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352
            ++     IRDE  E++      K  +   D  +E +    D E      +       + 
Sbjct: 302 SKLAKRMGIRDEREEELLR---LKAENERLDEEVEKLRRYID-EDVVSATLFNSVEQNLK 357

Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412
            V+ +       L  + +  F       + +     I + LL                  
Sbjct: 358 NVINIKDQEISRLEEKIQQNFVDVEALERKVLEAQHIKEQLLKL---------------- 401

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +       + T  Q +AIL L+   L + +    ++    L  E  ++ +LL +  +++
Sbjct: 402 -QNEHAEARNETFVQNEAILELKD-ELARYKSSDGRT-AKQLEDEVAELRALLANKSEEF 458

Query: 473 NQIACEIRE 481
             +  ++ E
Sbjct: 459 EHLKSDMYE 467


>gi|297244301|ref|ZP_06928191.1| ferrous iron transporter B [Staphylococcus aureus A8796]
 gi|297179079|gb|EFH38324.1| ferrous iron transporter B [Staphylococcus aureus A8796]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|284025570|ref|ZP_06379968.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus 132]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|304379752|ref|ZP_07362483.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|269942123|emb|CBI50536.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus TW20]
 gi|304341716|gb|EFM07624.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|329315229|gb|AEB89642.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus T0131]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|269204183|ref|YP_003283452.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus ED98]
 gi|262076473|gb|ACY12446.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|258428343|ref|ZP_05688167.1| ferrous iron transporter B [Staphylococcus aureus A9299]
 gi|257849807|gb|EEV73770.1| ferrous iron transporter B [Staphylococcus aureus A9299]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|224052553|ref|XP_002188710.1| PREDICTED: similar to M-phase phosphoprotein 1 [Taeniopygia guttata]
          Length = 2050

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 100/266 (37%), Gaps = 25/266 (9%)

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
             +   V+  K + +    L+E +      E +   N  +L +    +V+       ++ A
Sbjct: 775  NEGNEVVIAKEKYMMLVNLVEELRNRLITEKK---NKLLLEIKIREEVV---QEFTDYFA 828

Query: 367  HRREVLFRRSSFRMQA----IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
             R      R S   +      ++R+EI K L+ +  N DE   +   +D+P     +   
Sbjct: 829  QREINFKERLSHEREQLEENAEKRLEIFKELVNSTKNADEKSEL---QDQPCSEQAAGPL 885

Query: 423  LTENQVDAILNLR----LRSLRKLEEYQIKSELDNLLAEKEKIDS---LLNSGKQQWNQI 475
              EN  D    +     + SL+  +   IK++ +        ++     +   ++Q  +I
Sbjct: 886  NEENSTDTDTYMDFGGVIDSLQN-DITDIKNQAEAAHQYIVSLEDPQETIGCLEKQLAKI 944

Query: 476  ACEIREVKEIF-SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
              E+ E KE   +K+     +R    E +   K   ++  I+ E I  +I     ++   
Sbjct: 945  TAELVETKEELENKAKGFETQRIKLDESAEQLKEATEKMNIQNERIQELID---IVKEKD 1001

Query: 535  SHSVDLSALHFKEGDSLKIALHAHTT 560
               + L     +  +++K   +  TT
Sbjct: 1002 ETIMKLQGQITRSEETIKDYENTLTT 1027


>gi|221141432|ref|ZP_03565925.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302752409|gb|ADL66586.1| putative ferrous iron transport protein B [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|57652286|ref|YP_187356.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161280|ref|YP_495121.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196495|ref|YP_501320.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222662|ref|YP_001333484.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510750|ref|YP_001576409.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451492|ref|ZP_05699520.1| ferrous iron transporter B [Staphylococcus aureus A5948]
 gi|262050116|ref|ZP_06022971.1| hypothetical protein SAD30_1306 [Staphylococcus aureus D30]
 gi|262051459|ref|ZP_06023681.1| hypothetical protein SA930_0389 [Staphylococcus aureus 930918-3]
 gi|282923183|ref|ZP_06330866.1| ferrous iron transporter B [Staphylococcus aureus A9765]
 gi|294849653|ref|ZP_06790394.1| ferrous iron transporter B [Staphylococcus aureus A9754]
 gi|81859505|sp|Q5HD01|FEOB_STAAC RecName: Full=Ferrous iron transport protein B
 gi|57286472|gb|AAW38566.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127254|gb|ABD21768.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87204053|gb|ABD31863.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150375462|dbj|BAF68722.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160369559|gb|ABX30530.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860786|gb|EEV83606.1| ferrous iron transporter B [Staphylococcus aureus A5948]
 gi|259160629|gb|EEW45651.1| hypothetical protein SA930_0389 [Staphylococcus aureus 930918-3]
 gi|259161798|gb|EEW46385.1| hypothetical protein SAD30_1306 [Staphylococcus aureus D30]
 gi|282593232|gb|EFB98230.1| ferrous iron transporter B [Staphylococcus aureus A9765]
 gi|294823456|gb|EFG39884.1| ferrous iron transporter B [Staphylococcus aureus A9754]
 gi|315197154|gb|EFU27494.1| FeoB family ferrous iron (Fe2+) uptake protein [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320144512|gb|EFW36276.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329729128|gb|EGG65538.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|15925540|ref|NP_373074.1| ferrous iron transport protein B-like protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15928129|ref|NP_375662.1| hypothetical protein SA2337 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268982|ref|YP_001247925.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150395061|ref|YP_001317736.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980865|ref|YP_001443124.1| ferrous iron transport protein B-like protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253316066|ref|ZP_04839279.1| ferrous iron transport protein B-like protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255007322|ref|ZP_05145923.2| ferrous iron transport protein B-like protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794331|ref|ZP_05643310.1| ferrous iron transporter B [Staphylococcus aureus A9781]
 gi|258407321|ref|ZP_05680465.1| ferrous iron transporter B [Staphylococcus aureus A9763]
 gi|258419993|ref|ZP_05682950.1| ferrous iron transporter B [Staphylococcus aureus A9719]
 gi|258443018|ref|ZP_05691506.1| ferrous iron transporter B [Staphylococcus aureus A8115]
 gi|258445480|ref|ZP_05693669.1| ferrous iron transporter B [Staphylococcus aureus A6300]
 gi|258449039|ref|ZP_05697147.1| ferrous iron transporter B [Staphylococcus aureus A6224]
 gi|258453691|ref|ZP_05701668.1| ferrous iron transporter B [Staphylococcus aureus A5937]
 gi|282894940|ref|ZP_06303164.1| ferrous iron transporter B [Staphylococcus aureus A8117]
 gi|282927044|ref|ZP_06334669.1| ferrous iron transporter B [Staphylococcus aureus A10102]
 gi|295405243|ref|ZP_06815056.1| ferrous iron transporter B [Staphylococcus aureus A8819]
 gi|296276521|ref|ZP_06859028.1| ferrous iron transport protein B-like protein [Staphylococcus
           aureus subsp. aureus MR1]
 gi|81832445|sp|Q7A3F2|FEOB_STAAN RecName: Full=Ferrous iron transport protein B
 gi|81855862|sp|Q99R86|FEOB_STAAM RecName: Full=Ferrous iron transport protein B
 gi|13702500|dbj|BAB43641.1| feoB [Staphylococcus aureus subsp. aureus N315]
 gi|14248324|dbj|BAB58712.1| ferrous iron transport protein B homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147742051|gb|ABQ50349.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947513|gb|ABR53449.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156723000|dbj|BAF79417.1| ferrous iron transport protein B homolog [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257788303|gb|EEV26643.1| ferrous iron transporter B [Staphylococcus aureus A9781]
 gi|257841107|gb|EEV65557.1| ferrous iron transporter B [Staphylococcus aureus A9763]
 gi|257843952|gb|EEV68344.1| ferrous iron transporter B [Staphylococcus aureus A9719]
 gi|257851624|gb|EEV75559.1| ferrous iron transporter B [Staphylococcus aureus A8115]
 gi|257855740|gb|EEV78666.1| ferrous iron transporter B [Staphylococcus aureus A6300]
 gi|257857726|gb|EEV80619.1| ferrous iron transporter B [Staphylococcus aureus A6224]
 gi|257864167|gb|EEV86918.1| ferrous iron transporter B [Staphylococcus aureus A5937]
 gi|282591091|gb|EFB96165.1| ferrous iron transporter B [Staphylococcus aureus A10102]
 gi|282762736|gb|EFC02872.1| ferrous iron transporter B [Staphylococcus aureus A8117]
 gi|285818210|gb|ADC38697.1| Ferrous iron transport protein B [Staphylococcus aureus 04-02981]
 gi|294970188|gb|EFG46206.1| ferrous iron transporter B [Staphylococcus aureus A8819]
 gi|312830889|emb|CBX35731.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130801|gb|EFT86786.1| hypothetical protein CGSSa03_11860 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329723408|gb|EGG59937.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|228989444|ref|ZP_04149431.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM
           12442]
 gi|228770292|gb|EEM18869.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM
           12442]
          Length = 286

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 28/211 (13%)

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503
              +K  +     EK +   ++++      Q+  EI  + ++ +    L   +  F E++
Sbjct: 75  IDALKDGIAASEEEKLEYLEIISNKANSLKQLVDEIFNMAKLDADEFPLKEEQLDFSEIT 134

Query: 504 RAD----------KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGDSLK 552
           R             +   Q  I +EP  +   +   IR +   ++  +A+H+   G  + 
Sbjct: 135 RESLIEFLPELSKHSIELQINIPEEPCIITADSFSLIRVI--SNLLKNAIHYGHSGKIVG 192

Query: 553 IALHAHTTDRILLLSTDG-------------KAYTLPAGNLLS--GRGHGEAIQLLIDLN 597
           I L   T D  LL+   G             + Y +      S  G G G AI   +   
Sbjct: 193 IELLETTNDYQLLIWDKGPGISTDDLENVFERMYQIDQSRNPSHGGSGLGLAIAKALVEK 252

Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628
           +   I    +            K   F  + 
Sbjct: 253 NGGQIWVESIPWKKTTFGFSIPKQTVFKKQL 283


>gi|227889829|ref|ZP_04007634.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227849693|gb|EEJ59779.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 501

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 111/311 (35%), Gaps = 13/311 (4%)

Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288
           G I +E  +       L RG       + + ++  G      +EI   + +   +++I E
Sbjct: 121 GAIYLEQDKG---WTLLNRGKIIGNISFNIRDLLIG-LSENNSEILNMISEKNRLKQIKE 176

Query: 289 LIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348
              A  I  L +  + S + V   +   +  L+    ++                   + 
Sbjct: 177 ETKA--ILKLSEYTNYSNKPVEEDIELSDEDLNKYKNLKIQERFLKTRINELKRTINRTN 234

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
                +  L+ ++K  +A +  ++  + +  +   D   + LK  L++   +D  +  I+
Sbjct: 235 SLKNYIYSLNLLIKNPIADKPPIVVNKKNNNLMHFDSTTDYLKTELVSLQ-LD--LNDIQ 291

Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR--KLEEYQIKSELDNLLAEKEKIDSLLN 466
            +       +   + +  + + ++   L++L   K+    I+   DNL  E + ++  ++
Sbjct: 292 KQKVELDRKLDEDTNSLFRTEDVVQSSLKALSHIKINRELIEKRQDNLDKEIDDLNKEID 351

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              ++  +I  E       F+K   LG                ++     +    V    
Sbjct: 352 EEFKKNKEILSETEAWIRKFAK--ILGIEDVINSHRDYLFTHDIKSISGTQYYKVVFCFK 409

Query: 527 RGWIRSLKSHS 537
             +I+ +++H+
Sbjct: 410 MAYIKVIENHT 420


>gi|225444509|ref|XP_002268763.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 752

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL--NIDEIIAIIRNEDKPKPVMVSR 420
             L   R    ++    ++ ++      +      +   ID++   +  E K +  M   
Sbjct: 291 HELEAERHSFKKKLEHFLKKVNEDRTSWQSREQQKIRGIIDDLKDKLNIERKNRQRMEIL 350

Query: 421 F-SLTENQVDAILNL----RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              L     DA L++    +     +     ++   + L  E  +  + + S K+++ +I
Sbjct: 351 NSKLVNELADAKLSMKEFMQEYEKERKGRELMEEVCNELAKEIGEDKAEVESFKREYVKI 410

Query: 476 ACEIREVKEIFSKSTDLGRRRTTF 499
             E+ E +++   +      R   
Sbjct: 411 REEVEEERKMLQMAEVWREERVQM 434


>gi|1478249|emb|CAA99278.1| DNA topoisomerase II [Meyerozyma guilliermondii]
          Length = 389

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
           R+ L+ + + +  +     +  LS+      L +         + + +   LK+     R
Sbjct: 14  RLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRLEMVDDLKKLK-FTR 72

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
                +       ++      +    A       + ++  ED+ +     +   T +Q D
Sbjct: 73  FNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQ----YKPETTYSQYD 128

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWN 473
            +L + + SL      + +  L     ++E+++ LL  S K  WN
Sbjct: 129 YLLGMAIWSLT---RERYEKLLRQRDEKQEELNELLKKSAKDLWN 170


>gi|323473030|gb|ADX78142.1| RNA-dependent RNA polymerase [Groundnut ringspot virus]
          Length = 2873

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 120/360 (33%), Gaps = 38/360 (10%)

Query: 160  EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN--VQEICEAALALIDNPEISIEKL 217
            +          K   +  +  SG  V  +  I SHN  +  I +  + L +    S   L
Sbjct: 2153 DSKPIWQSLEEKMRKINNSTASGFTV--SNVILSHNSELNTIQKQIVWLWNMGLCSNRTL 2210

Query: 218  ---LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274
               + YI   D        +       S  + + G   R+ + V+ +       V    P
Sbjct: 2211 DFVIRYIRRSDVRYVKTEEQDELGNYVSGTIYKIGIMTRSCY-VQLIASDQDVAVTLRTP 2269

Query: 275  YQVQKSR------LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR--SLDPDLLM 326
            +++   R        E I +L+       +  I+  S +   + L P +    +  D  M
Sbjct: 2270 FEILNERDFLYDTYRESIEKLLQKFMFDKINIIK--SKQPQIVFLEPGDACLRMTTDNKM 2327

Query: 327  ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH--RREVLFRRSSFRMQAID 384
                  +  + R      V+ +        +  I++   A   R   +    S   + ID
Sbjct: 2328 IVKVNATPKQIRLENVKLVIRIKYENVNSDVWDIIESQKALVLRIPEVGECFSDMYKTID 2387

Query: 385  RRVE----ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
               E    I  GL+ +   I+    + +  D+ +              D ++N++   L 
Sbjct: 2388 SETEAIKVIKAGLMTSLTFIETFGNLSKQIDEIEDETARETM-----HDFLMNIKDTCLE 2442

Query: 441  KLEEYQIKSELDNLLAEK---------EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
             LE  +   E D  L E          E++    ++ + +++ +  EI +  + ++K  +
Sbjct: 2443 GLESCKSVEEYDEFLEENGFNDTVELFEELLKTQDNFENEYSPLFSEIVDKAKKYTKDLE 2502


>gi|307267481|ref|ZP_07548966.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917495|gb|EFN47784.1| ferrous iron transport protein B [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 681

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 11/137 (8%)

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440
           + +   +++ +        +D    I    DK K ++    +LT+           R L 
Sbjct: 163 ELLQAVLKVYESKEKEVYKVDYGKEIEEEIDKLKKLIEKEENLTK-----------RFLA 211

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           +    ++    +N++ E E    +L+  K+    +   + E  EI       G       
Sbjct: 212 RWLAVKLLENDENIIKEIENYKDILSQLKESKKYLEEVLGEDAEILIADKRYGFISGIIK 271

Query: 501 EVSRADKATLQQAMIEK 517
           E  R       +  +  
Sbjct: 272 ECVRKHYTVEDRYTLSD 288


>gi|253734017|ref|ZP_04868182.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728016|gb|EES96745.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|156095406|ref|XP_001613738.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802612|gb|EDL44011.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1526

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 55/155 (35%), Gaps = 12/155 (7%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN- 433
           +  + +    R  ++ K + ++  N DE     +   + +  +       E+    I++ 
Sbjct: 688 KQKYDLLKKKREEDVSKEVNMSKSNADEEDNFFKKFYQSQSFIKLEEKKLEDSSKRIIDE 747

Query: 434 ---------LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
                    +   S R++E+  +  E+     E EK    +   K++      EI +  +
Sbjct: 748 NVRLTRMKEMNENSKREIEKDMLDMEVK--RKEIEKDKDDMEIKKKEIELANEEISKQNK 805

Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
              +  D+  RR    E   +     ++ + E+  
Sbjct: 806 QLEEEKDMLNRRKKELEEESSLLDNTKREVDEQND 840


>gi|291401775|ref|XP_002717124.1| PREDICTED: centrosome protein 4 [Oryctolagus cuniculus]
          Length = 1758

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 87/284 (30%), Gaps = 28/284 (9%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI--VLFPKNRSLDPDLLMESIFMLS-DM 335
           K  L EK+   I    +    ++        R+   L  +   L  ++L+    + S + 
Sbjct: 585 KETLREKLNN-IQEMNLFGKSELEKTIDHLTRVNHQLEDEKYELKSEVLLMKEKIDSLEN 643

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +++          G           L+     + E        R+      ++  +  + 
Sbjct: 644 KSKLQAQKLCHVAGDSSHQKSEMNSLRIVNE-QLERSLDDYQHRLSVKRGELDSAQAQIK 702

Query: 396 AYL-NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
                ID++   + ++D+   VM     + +                 E+  ++  +D  
Sbjct: 703 ILEEQIDKLNLKMTSQDEEVHVMKKTIGVIDK----------------EKDFLQETVDEK 746

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             +   +   L S ++   Q+   + E  +  ++  +    R       R       + +
Sbjct: 747 TEKIANLQENLASKEKTIAQMKITVSEFDKSMNQLKETLSNRDREVSSLRRQLDAAHKEL 806

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
            E     V  S     +  +    DL+ +  +E   + + L A 
Sbjct: 807 DE-----VGRSRDMAFKENRRLQDDLATMA-RENQEISLELEAS 844


>gi|168043668|ref|XP_001774306.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674433|gb|EDQ60942.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1019

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 73/260 (28%), Gaps = 22/260 (8%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN- 426
           R     RR +  +     R  I +      L       I++   + +       S+ E  
Sbjct: 714 RCIYKQRRMTTIILQCMVRGAIARKRFGRLLERHRAAVIVQKYARQQSACRKYQSIKEKI 773

Query: 427 -QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS--LLNSGKQQWNQIACEIREVK 483
            +V A++ + L   + L + +   E     A+  ++    +              +   K
Sbjct: 774 VKVQAVIRMWLARKQFLAQRREAEERLATEAKLRELQEVTIKVRPSYLLELQRRAVMAEK 833

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543
            +  K  +    R               +    +E          W + + S  + LSA 
Sbjct: 834 ALREKEEENASMRQKILHYEARWMEYEAKMTSMEEM---------WQKQMSSLQLSLSAA 884

Query: 544 H--FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601
                  D   +       D I    + G+  + P G++ + R     +    D      
Sbjct: 885 KRSLATDDYSMLQTPTKDHDSINDRFSAGRECSTPRGDVDAARSVVNHLVREFDHRTQ-- 942

Query: 602 IVTAFVYDSTCKLLVVSSKG 621
                V++     L+    G
Sbjct: 943 -----VFNDDADFLIEVKSG 957


>gi|123470155|ref|XP_001318285.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121901040|gb|EAY06062.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2416

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 87/261 (33%), Gaps = 10/261 (3%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            E++      I   +   +  +    + I EL    R+    +    +  D ++++   ++
Sbjct: 855  EKLENAKKEIQELQEYAEKSQENDKQTIDELKEKLRL---ANETKVTDSDTKVLVE--SK 909

Query: 319  SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378
                  ++     +SD++       +V+      +V   +    E   H  E        
Sbjct: 910  EAAEQKVLLLEKEISDLKIEIEDLKSVIDEENEQKVSNTEA---ENRIHELESEISELKK 966

Query: 379  RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +   + +    + +      I+++ ++I  E++ K       +        I  L+ + 
Sbjct: 967  ELDQNNNQQN-DEKIEKLQKEIEDLKSVIDEENEQKVSNTEAENRIHELESEISELK-KE 1024

Query: 439  LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            L +    Q   +++ L  E E + + L S K +  ++  E  +  +  S+       +  
Sbjct: 1025 LDQNNNQQNDEKIEKLQKEIEDLKNELESSKAENEELQNEFEKEIDQISQEKQNLESQIK 1084

Query: 499  FCEVSRADKATLQQAMIEKEP 519
            + +        + +     E 
Sbjct: 1085 YLQEKGDKSEIIDKLNQTIEE 1105


>gi|299741011|ref|XP_001834155.2| hypothetical protein CC1G_09112 [Coprinopsis cinerea okayama7#130]
 gi|298404513|gb|EAU87651.2| hypothetical protein CC1G_09112 [Coprinopsis cinerea okayama7#130]
          Length = 1313

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 72/186 (38%), Gaps = 19/186 (10%)

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS---FRMQAI----DRRVEILKGLLI 395
                       +  + +LKE +AH   ++  RS       + +    +   E+  GL  
Sbjct: 676 QIAALERDRADQLKREEMLKEEIAHLETLVKDRSEDVSHLKEMLWNRDESERELQVGLRE 735

Query: 396 AYLNIDEIIAI---IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
           A   +D++  +   + +ED+ K +M  +   TE+          R+  ++ E   + E +
Sbjct: 736 AKEQMDQLGNVSLAVIDEDELKRLMEEKQQATED---------ERARHRVAELTWQQEKE 786

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            L  + E ++    + +++  ++  +++   + F+        + +  E   +   TL +
Sbjct: 787 ELTMKIESLEVEKAACEEEVEKVKSQLKARDDEFAVLKSELEAQWSNTESMSSQIDTLMR 846

Query: 513 AMIEKE 518
              E E
Sbjct: 847 EKHEVE 852


>gi|242012459|ref|XP_002426950.1| Spectrin beta chain, putative [Pediculus humanus corporis]
 gi|212511179|gb|EEB14212.1| Spectrin beta chain, putative [Pediculus humanus corporis]
          Length = 2332

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 281  RLIEKIAELIIAKRIPLLEDIR--DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
            + + ++++L   + +  L   +   ES  D  ++     + ++   +M+  +   + E  
Sbjct: 829  KELLELSKLRKQRLLDALSLYKLFSESDGDRMLLTMVPAKDIEDVEIMKHRYDGFEKEMN 888

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID-RRVEILKGLLIAY 397
               +   +      +++ ++    E +  ++  L  + +   +  + +R E+     +  
Sbjct: 889  ANASRVAVVNQLARKLLHVEHPNSEQIMAKQNQLNHKWAELREKAEAKRDELGSAHGVQT 948

Query: 398  LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
             +I+    +   ED  K  ++         +  I+ L+ R L  +E   + +    L + 
Sbjct: 949  FHIECRETLSWIED--KKRILQETDSLGMDLTGIMTLQ-RRLSGMERD-LAAIQAKLDSL 1004

Query: 458  KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            +++ +++     ++   I   I+++K I+ + T + + R    E
Sbjct: 1005 EKEAEAINKDHPEEAEVIRGRIKQIKVIWEQLTQMLKERDAKLE 1048


>gi|195352889|ref|XP_002042943.1| GM16340 [Drosophila sechellia]
 gi|194127008|gb|EDW49051.1| GM16340 [Drosophila sechellia]
          Length = 1265

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 72/209 (34%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+++ +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTDELIR--LEQEEMDTLQLLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LIARKDMLLWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGIKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKDTVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTTKIAKVDETMLEIQAQLE 818


>gi|320138954|gb|EFW30840.1| ferrous iron transport protein B [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 596

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 55  KIDYHKLMKKLKTPIFPVVARTGKGTKYLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 114

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  +RD+ AE V  V   +  
Sbjct: 115 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSLRDQVAEQVGAVSVRREM 174

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 175 ERIRNHYIETL 185


>gi|291228745|ref|XP_002734340.1| PREDICTED: translocated promoter region (to activated MET
           oncogene)-like [Saccoglossus kowalevskii]
          Length = 1263

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 90/307 (29%), Gaps = 38/307 (12%)

Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIR----DESAEDVRIVLFPKNRSLDPDLLMESI 329
           P Q Q   L  K+  L++ K     +  R      +  D          +      +  +
Sbjct: 590 PLQEQNRALTSKVDVLVLEKNTLTADVNRWKNKTNTKADPEQYKKLVEENESNKKTISQL 649

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE- 388
              +  +      +N L      +V           + +++    + +  ++ I + VE 
Sbjct: 650 TEENQRQKAELSRLNSLVSNTQAEVRNSK-----LESTKQKSETTKLNEELEKIKKEVET 704

Query: 389 ILKGLLIAYLNIDEIIAI----------IRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
               L     NI ++  I          ++ +   K         T +Q +A L   ++ 
Sbjct: 705 KNTSLEEMKKNIAQVKKIGRRYKTWYDELKKQTDDKQAEPQSQQPTASQANAELEASVK- 763

Query: 439 LRKLE-EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK--------- 488
             K E   ++  E+  L  E EK++  L   K+    I  ++ +  E   K         
Sbjct: 764 -AKDEQIQKLNEEMGKLKTEIEKLNENLTKVKESEETIKTQLNDKDEKTKKLLMSAKQKI 822

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE- 547
           S   G+R     E                E           I+S   H+        KE 
Sbjct: 823 SQLTGQREKQNSEAEELKTKVTNLEKTVDEKEK----QVNAIKSQHEHNTKQLEQQLKEA 878

Query: 548 -GDSLKI 553
             D  K 
Sbjct: 879 KNDFEKF 885


>gi|289168051|ref|YP_003446320.1| chromosome condensation and segregation SMC protein [Streptococcus
           mitis B6]
 gi|288907618|emb|CBJ22455.1| chromosome condensation and segregation SMC protein [Streptococcus
           mitis B6]
          Length = 1179

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---ATIASDKQNLEAEIEEIKSNKNAIQERYQNLQEQVAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   +K      +
Sbjct: 821 QKRYEVADIERLGKELDNLDIEQEEIQRLLQEKVDNLEKVDTELLSQQAEEAKIQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNLEA 984


>gi|154413164|ref|XP_001579613.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121913821|gb|EAY18627.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 453

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
           I  E+  K    S  +  EN V      +   + K+E  ++K E++ L  E EK +   N
Sbjct: 263 ITKEENEKLRKESETTKQENDVIR----KESEINKIEIDKLKQEIEILKREIEKYNQDPN 318

Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           S K + +++  E+   K   +             E  R +  T++Q 
Sbjct: 319 SYKIENDKLRKELDIAKREIADYKKDPNEYKEENEKVRKELETIRQE 365


>gi|256811490|ref|YP_003128859.1| hypothetical protein Mefer_1556 [Methanocaldococcus fervens AG86]
 gi|256794690|gb|ACV25359.1| hypothetical protein Mefer_1556 [Methanocaldococcus fervens AG86]
          Length = 837

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             R++   ++ I  ++EI   +      +DE+  +    +    + +    L E + +A 
Sbjct: 9   DVRKNLKSLEKIKSKLEIEGNINAIIKQLDELKNVKSEVEFKSNINMIIRELEEIEAEA- 67

Query: 432 LNLRL---RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             + +     L KL     KSEL+ L   K  I +  +   +Q N+I  E+ E + I +K
Sbjct: 68  SKMNINFDYDLSKL-----KSELEQLKNTKIDIKTNTDYILKQINKIKSELSEKQTIRAK 122

Query: 489 STDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISN 526
                        E S          +       + IS+
Sbjct: 123 VEVDRTEWDKLKKEWSEKYHIDAIADVASVGTAYMGISD 161


>gi|169824655|ref|YP_001692266.1| putative chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 29328]
 gi|325847199|ref|ZP_08169979.1| copper amine oxidase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|167831460|dbj|BAG08376.1| putative chimeric erythrocyte-binding protein [Finegoldia magna
           ATCC 29328]
 gi|325480930|gb|EGC83977.1| copper amine oxidase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 783

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 18/226 (7%)

Query: 284 EKIAELIIAKRI--PLLEDIRDESAEDVRIVLFPKNRSL---DPDLLMESIFMLSDMETR 338
            KI +L    +     ++D+ D+  ED   +   K +     D    ++      + E R
Sbjct: 296 NKIDDLTKNIKDLENQIKDLNDKKQEDQTKIDELKEKLESCKDNGEKLKQEKAKLEEEIR 355

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA-- 396
              N        + ++   +         + +   +R       +       K  L A  
Sbjct: 356 DKDNKIAQLNKEIEELKNSNNDELIAEITQLKDELKRLQDENAKLKEDYSSTKWELEAEK 415

Query: 397 ---------YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
                       + E +  +  E   K   +         ++  L+ +   +R LE  + 
Sbjct: 416 EKTDKNENKIKEMQEKLESLEGELAKKTKEIEDKDNRIKDLEKALDEKDAKIRDLESKKK 475

Query: 448 KSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           ++E        + E++   ++S K        E+ +  ++  +   
Sbjct: 476 ETENSKSECCKKIEELQKAIDSLKVSSENTKKELEDKIKVLEEKQK 521


>gi|124088712|ref|XP_001347206.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145474095|ref|XP_001423070.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057595|emb|CAH03579.1| hypothetical protein with coiled-coil domains [Paramecium
           tetraurelia]
 gi|124390130|emb|CAK55672.1| unnamed protein product [Paramecium tetraurelia]
          Length = 694

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 79/223 (35%), Gaps = 10/223 (4%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           Q    R   +I  L    +I   +  R +  E+   +    + ++  +   + I    ++
Sbjct: 70  QQNIERWKNQINTLKNNTKILEAQLERLKEDEEQMKIQTLNDINIISEKKQQQIIDKDNV 129

Query: 336 ETRFPLNMNVLSMG-RVPQVMPLDGIL---KEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                  +  L     + +    D IL   +    H+++++ R +    + I  + +   
Sbjct: 130 IVTLNQQVKDLQNQIEINKSKLQDQILHGEELMKQHQQQLIQRVAQLDNEIIQIKQQHQF 189

Query: 392 GLLIAYLNIDEIIAIIRNEDKPK----PVMVSRFSLTENQVDAILNLRLRSLRKLE--EY 445
                  N ++     + E   +         ++ L   Q       +++ +++L+    
Sbjct: 190 ETQAVMHNHEKDRKFFKEELDNQISLIEQKYKKYYLENQQFQEKYQKQVQQIKQLKQQRD 249

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
             + +LD    + +     L S ++   +   +++E +E+ ++
Sbjct: 250 NFEKQLDQQNQKIKSYIEELASERKNKAKENKQLQEQQELINQ 292


>gi|327389482|gb|EGE87827.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA04375]
          Length = 1179

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRQQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|327270648|ref|XP_003220101.1| PREDICTED: formin-binding protein 1-like [Anolis carolinensis]
          Length = 603

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 74/264 (28%), Gaps = 40/264 (15%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +EK A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 11  HTQWGIDFLEKYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 62

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG-- 392
               + +      +  +        ++ E L HR      R S  +   +R++ + +G  
Sbjct: 63  CIAFYNI------LNELNDYAGQREVVAEELGHRVYGELMRYSHDL-KTERKLHLQEGRK 115

Query: 393 ----LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKL 442
               L + +  +D           E +       R     N   A +    + L     +
Sbjct: 116 AQQYLDMCWKQMDNSKKKFERECREAEKAQQCYERLDNDTNATKADVEKAKQQLNLRTHM 175

Query: 443 EEYQIKSELDNLLAEKEK--------IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +         L     +        I  +    ++   +   ++ E    F+       
Sbjct: 176 ADENKNEYAAQLQNFNGEQHKHFYIVIPQIYKHLQEMDERRTIKLSECYRGFAD-----S 230

Query: 495 RRTTFCEVSRADKATLQQAMIEKE 518
            R     +S+  +  +  A    E
Sbjct: 231 ERKVIPIISKCLEGMIAAAKSVDE 254


>gi|71664163|ref|XP_819065.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884350|gb|EAN97214.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 753

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 35/239 (14%)

Query: 270 VTEIPYQVQKSRLIEKIAELI------IAKRIPLLEDIRDE-SAEDVRIVLFPKNRSLDP 322
           V E   QV+  R IE+  E I        + I  L++  ++    D ++ L  +    + 
Sbjct: 511 VKEAESQVEAQRSIERELEAIRATLASKEQCILYLQEQLNQLHHRDQQLSLDLQTFEYEN 570

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI------------LKEWLAHRRE 370
             L   +     + T+F    N L    + +    + +            LKE       
Sbjct: 571 GQLHRRLVQTEALVTQFEAKCNDLQQVSLAKDKTTEELQQSLAELSKQVALKENECMLLR 630

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI----IRNEDKPKPVMVSRFSLTEN 426
                  + +  +    E     L    N +  + +    I + D+          +T+ 
Sbjct: 631 HRSESIQYDLSRLQSVYESESYRLRELENTNARLVVRGVMIGDSDERLNPFREELEVTKE 690

Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI-------DSLLNSGKQQWNQIACE 478
           ++    ++ L+ L+     Q++ E +  +   E++       +  L S ++    +  +
Sbjct: 691 KLRE-KSMALQRLK----DQLQKEKEERMKCIEELGAVQTSLEEALLSKERLQQVVLDQ 744


>gi|225860920|ref|YP_002742429.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229965|ref|ZP_06963646.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254344|ref|ZP_06977930.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502756|ref|YP_003724696.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727720|gb|ACO23571.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238351|gb|ADI69482.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
          Length = 1179

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRQQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|295108798|emb|CBL22751.1| Bacillus/Clostridium GerA spore germination protein. [Ruminococcus
           obeum A2-162]
          Length = 516

 Score = 39.0 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 19/153 (12%)

Query: 162 DSEPVVFPSKFPNLLANGTSGIA-VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220
           +    + P K P  + N + GIA V        +++ E+  A L+      I        
Sbjct: 71  NHFWEIPPEKIPEFMQNNSLGIADVQKL-----YDMNEVLGAVLSGNAVFFIDGYDKAMK 125

Query: 221 IIGPDFPTGGIIV--------ESRESIVESYRLGRGGFRVR---ARWCVEEVGRGSWCIV 269
           I    +P  G+           SRE   +S +      R R    R  VEE   G     
Sbjct: 126 ISSRGYPNMGVSEAESEKVLRGSREGFSDSVKTNSALVRKRLRDTRMKVEEYQMGVRSNT 185

Query: 270 VTEIPY--QVQKSRLIEKIAELIIAKRIPLLED 300
           V +I Y   +    L+E+I E I    I  + D
Sbjct: 186 VLQILYIDDLVHEELLEQIKERIEEYEIDGVLD 218


>gi|293417188|ref|ZP_06659815.1| hypothetical protein ECDG_04341 [Escherichia coli B185]
 gi|291431219|gb|EFF04212.1| hypothetical protein ECDG_04341 [Escherichia coli B185]
          Length = 802

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/301 (8%), Positives = 87/301 (28%), Gaps = 21/301 (6%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
             D         S++ +     +        ++  + +  +    I +  I +   +S+ 
Sbjct: 464 CKDCAIDPNTNYSKDGLTAQKYMYMDLDGAISKEQIPDFLKKVSAINIDVINFYNSESKT 523

Query: 283 IEK-------IAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSD 334
            EK       +   +    +           ++ R+     K+   +   ++ ++     
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEEKYHFDNSRVEFFIFKDMQENAQNIINNMIESDR 583

Query: 335 METRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKG 392
           ++    + N  +               +++ +    +      +F  + +    E + + 
Sbjct: 584 IKFVESIINKMIPPPDGTILTENPKEYVQKQIKESHKESATNVTFDYKELASIFEGVEEK 643

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + A  N  E I   + +   +    +R     +   AI               +    +
Sbjct: 644 QIKALSNQLEHIKSFKTDYDSRLNKYARDFHYFSSAFAI-----------NREDLLKNYE 692

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + +  +  D LL   K+   +    + + + +F    D    +    EV+  ++     
Sbjct: 693 EIRSSIKDYDDLLREIKELTIKRDKSVDDKRTLFDNKRDKWNSQEVQDEVAALNQKIADD 752

Query: 513 A 513
            
Sbjct: 753 D 753


>gi|270006868|gb|EFA03316.1| hypothetical protein TcasGA2_TC013259 [Tribolium castaneum]
          Length = 672

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 87/261 (33%), Gaps = 13/261 (4%)

Query: 232 IVESRESIVESYRLGRGGFRVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
              S E I  +YR          R  + EEV           + Y+   + +  +  + +
Sbjct: 147 YRASEEIIKTAYRKKVLKHHPDKRKALGEEVKADDDYFTCITMAYETLGNPVKRRSYDSV 206

Query: 291 I---AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET--RFPLNMNV 345
                  +P   D++ +  E         +R  +   + +     S  E   RF      
Sbjct: 207 DPEFDNNVPSGADLKKDFYETFSYFFDLNSRWSEKTNVPKLGGPDSSREEVERFYSFWYD 266

Query: 346 LSMGRVPQVMPLDGILKEW-LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
               R       +   K      RR V     + R++     +  ++ L+    N D  I
Sbjct: 267 FKSWREYSYEDEEDKEKCQDRDERRYVDKLNKAERLRKKKEEMSRIRSLVDIAYNNDPRI 326

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           A I+ E+K + +   R   T  Q       R+     L E Q+  E     AE+ +I++ 
Sbjct: 327 AKIKQEEKDRKLAAKRAKQTAAQAKKEEEERI-----LREAQLLKEQAE-AAERARIEAK 380

Query: 465 LNSGKQQWNQIACEIREVKEI 485
               + Q   +  E + ++++
Sbjct: 381 RQEREAQKRALKKERKALRDL 401


>gi|146162675|ref|XP_001009860.2| hypothetical protein TTHERM_00161300 [Tetrahymena thermophila]
 gi|146146362|gb|EAR89614.2| hypothetical protein TTHERM_00161300 [Tetrahymena thermophila SB210]
          Length = 2101

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 72/206 (34%), Gaps = 5/206 (2%)

Query: 283  IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
            I+ I  L   +    ++DI  E  + ++  +   ++ +     +E   +L   E      
Sbjct: 1121 IQIIQRLKEQECEQKIKDIITEKEDLMKQTVEITSKEIQKKNKLEIEKLLEQQENNKQQE 1180

Query: 343  MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA---IDRRVEILKGLLIAYLN 399
            +  +      Q+  +   ++E       +  ++    +       + + I    + + + 
Sbjct: 1181 IQKILKEHDQQIRSVQQKIEEQNK-EDLITKQKLQSELSKCSEFQKEIFIKDQKIASVIQ 1239

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
              E +++   + + +   ++   + + Q     N  LR        +++    +L  + +
Sbjct: 1240 EKEQLSLSIKKLEIQNQKLNDEIIQQKQTQKHENEELRQNTNNRINELEILNKDLNKKIQ 1299

Query: 460  KIDSLLNS-GKQQWNQIACEIREVKE 484
                +L    +   N I  +  E+++
Sbjct: 1300 DFVEILKDKEQNINNLIKEKEIEIQK 1325


>gi|111601366|gb|AAI19559.1| Jakmip3 protein [Mus musculus]
          Length = 461

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 75/189 (39%), Gaps = 8/189 (4%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-VSRFSLTENQVDAIL- 432
           +  F ++ +  + EI + L  A   ++E + ++   DK K     S + L + ++  I  
Sbjct: 144 KKGFEVEKVKMQQEISE-LKGAKKQVEEALTMVIQADKIKAAEIRSVYHLHQEEITRIKK 202

Query: 433 --NLRLRSLRKLEEYQIKSELD--NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
                +R L+  E+   + +L    L A   K++       ++ N++   +RE +  +  
Sbjct: 203 ECEREIRRLQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRLREAESQYKP 262

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR-GWIRSLKSHSVDLSALHFKE 547
             D  +R T   E        ++  +       + +  R G IR   S +    +   +E
Sbjct: 263 LLDKNKRLTRKNEDLSHTLRRIESKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDERE 322

Query: 548 GDSLKIALH 556
            D LK+ + 
Sbjct: 323 IDFLKLQIV 331


>gi|297664540|ref|XP_002810697.1| PREDICTED: outer dense fiber protein 2-like isoform 2 [Pongo
           abelii]
          Length = 591

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ +   +VQ   + ++I  L+   +   +ED    S E++   +       +   L
Sbjct: 289 EKIVIEKTELEVQIETMKKQIVNLLDDLKK--MEDHGKNSCEEILRKVHSIEYENEILNL 346

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
             +    +                 V  V      L+E    ++ +       ++Q +  
Sbjct: 347 ENTKLKTT----------LAALKDEVVSVENELLELQEVEKKQKTL-IEMYKTQVQKLQE 395

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP--VMVSRFSLTENQVDAILNLRLRSLRKLE 443
             EI+KG     L+ +  I   +N++  K          L+  + + ++ L+        
Sbjct: 396 AAEIVKGRCENLLHKNNQITKTKNKNVEKVDGNHNLLTKLSLEEENYLIQLKC------- 448

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
              ++ +L+ + AE ++++  L + ++       +++E    +
Sbjct: 449 -ENLQQKLEQMDAENKELEKKLANQEECLKHSNLKLKEKSAEY 490


>gi|294633422|ref|ZP_06711981.1| quinone oxidoreductase [Streptomyces sp. e14]
 gi|292831203|gb|EFF89553.1| quinone oxidoreductase [Streptomyces sp. e14]
          Length = 323

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689
           +G   + + S E+   V K  G    +V          +D++ E++ G+GVR 
Sbjct: 162 RGVRVIGLVSREEKVPVAKAAGADEVLVSSGGGF----VDRVRELTEGQGVRA 210


>gi|240256182|ref|NP_195370.5| heat shock protein binding [Arabidopsis thaliana]
 gi|332661266|gb|AEE86666.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]
          Length = 1422

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 23/275 (8%)

Query: 287 AELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346
           A L   ++   +++ R E AE+ R  +  + ++     + E   +   ++  F       
Sbjct: 666 AALEQEEKERKIKEAR-EKAENERRAVEAREKAEQERKMKEQQELELQLKEAFEKEEE-- 722

Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406
           +              +     R +    R   R++    + E+ + L       ++   I
Sbjct: 723 NRRMREAFALEQEKERRIKEAREKEENER---RIKEAREKAELEQRLKATLEQEEKERQI 779

Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466
              +++ +    ++  L   Q +    L+  +L + E  +   E       K+K+   + 
Sbjct: 780 KERQEREENERRAKEVL--EQAENERKLK-EALEQKENERRLKETREKEENKKKLREAIE 836

Query: 467 SGKQQWNQI-ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
             +++   I A E  E++    +  +    R    E    ++   +    ++        
Sbjct: 837 LEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRLQEAKERERLHRENQEHQENE------ 890

Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560
                   K H         KE D+ ++     TT
Sbjct: 891 -------RKQHEYSGEESDEKERDACEMEKTCETT 918


>gi|71065383|ref|YP_264110.1| putative chaperonin clpA/B [Psychrobacter arcticus 273-4]
 gi|71038368|gb|AAZ18676.1| putative chaperonin clpA/B [Psychrobacter arcticus 273-4]
          Length = 865

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 100/305 (32%), Gaps = 46/305 (15%)

Query: 215 EKLLEYIIGPDFPTG---GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           E L + II  D P G     ++      + +    RG F  R +  + ++ +    +++ 
Sbjct: 214 EGLAQKIINGDVPEGLRRKEVLSLDLGALIAGAKFRGEFEERLKAVLSDLSKQEGNVIL- 272

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDI---------RDESAEDVRIVLFPKNRSLDP 322
                      I+++  L+ A +     D          R E        L    + ++ 
Sbjct: 273 ----------FIDELHTLVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRKYIEK 322

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D  +E        +        V     + + +     L   +  +   +   +    + 
Sbjct: 323 DAALER-----RFQKVLVDEPTVEDTIAILRGLKERYELHHGVDIQDSAIIAAARMSHRY 377

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           I  R    K    A   IDE  + +R E   KP  + +      Q    L ++   L+  
Sbjct: 378 ITDRKLPDK----AIDLIDEAASRLRMEMDSKPESLGKLDSRLIQ----LKMQREVLKNE 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQW----------NQIACEIREVKEIFSKSTDL 492
           E+   ++E   L A+ E+++       + W           Q+  E+ + +  + K++  
Sbjct: 430 EDAGAQAERKVLDAQIEELEKEYADLNEIWQAEKALVKGSQQLKDELDKARIAYDKASRE 489

Query: 493 GRRRT 497
           G   T
Sbjct: 490 GDYET 494


>gi|32566139|ref|NP_506065.2| MYOsin heavy chain structural genes family member (myo-3)
            [Caenorhabditis elegans]
 gi|127737|sp|P12844|MYO3_CAEEL RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC
            A
 gi|6799|emb|CAA30856.1| myosin heavy chain 3 [Caenorhabditis elegans]
 gi|33300386|emb|CAB01576.2| C. elegans protein K12F2.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1969

 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 90/286 (31%), Gaps = 20/286 (6%)

Query: 248  GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
            G  +   +   E+   G   + + ++   VQ+        E+  ++    + D+ +E   
Sbjct: 847  GKVKPMLKAGKEQEAMGELAVKIQKLEEAVQRG-------EIARSQLESQVADLVEEKNA 899

Query: 308  DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-------LDGI 360
                +   K    D +   E +  L         ++         +           D  
Sbjct: 900  LFLSLETEKANLADAEERNEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKKTDQE 959

Query: 361  LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
            L +   H +++         +    R   ++ L     N DE +A +  E K +     +
Sbjct: 960  LSDTKKHVQDLELSLRKAEQEK-QSRDHNIRSLQDEMANQDEAVAKLNKEKKHQEESNRK 1018

Query: 421  FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
             +  + Q +     ++  L K+   +++ ++D L    ++        ++   ++  +++
Sbjct: 1019 LN-EDLQSE---EDKVNHLEKI-RNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLK 1073

Query: 481  EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526
              +E   + T       T  +    D       + E   I   +  
Sbjct: 1074 VAQENIDEITKQKHDVETTLKRKEEDLHHTNAKLAENNSIIAKLQR 1119


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 41/282 (14%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMNV-------LSMGRVPQ 353
           E+A +  +   PK  ++D + +  ++     LS ++  +     +       + +  + +
Sbjct: 10  ENACEELMAKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSFIVDVLVPGIDLSLIKK 69

Query: 354 VMPLDGILKEWLAHRREVLFRRS--------SFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +M    I K + + R+++    +         F  Q            +     +++   
Sbjct: 70  IMLNREITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSLR-----KLEEYQIKSELDNLLAEK 458
           +  ++ K K     +  L+E+Q+D  +N  + L  L      KLEE          +   
Sbjct: 130 VALDKIKAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGWFQEEMESI 189

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
             ++  L++ K  W +I                  R   T   VS   +   Q+  I + 
Sbjct: 190 VDVNKYLHNPKDAWKRIKF----------NYEANPRLMLTVKAVSEWQETLAQRYNINRN 239

Query: 519 PITVVISNRGWIRSLKSH------SVDLSALHFKEGDSLKIA 554
            +       G I     H       +  +  + KE D L+  
Sbjct: 240 KVVNNAVITGLIEKNVEHIDDILDDLKRNTKNIKEEDLLEFI 281


>gi|167539764|ref|XP_001741340.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894041|gb|EDR22125.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 1888

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 83/252 (32%), Gaps = 11/252 (4%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           E I    +  +            I L  +    D  ++M+ ++  + +         V+ 
Sbjct: 461 EEIKEYCMKFVYQFIVNQEIKEAIHLLMRLGYKDIKIIMKELYDNTHLIIIRKEIEKVMK 520

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE--------ILKGLLIAYLN 399
              + +   ++   +     + E  +      ++     +E           G+      
Sbjct: 521 EILIEENKYINEYEEYLDRIKIENKYEIKIKELKETQEELESEFTKETMKKYGISYEQGF 580

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
            D I  I R  +K    +       E   +   N+ LR   K E   I+ + + L  + +
Sbjct: 581 TDNIAIIPRINNKSGKAIGLSIKNIEQLNEEEKNMILREEGKYEIEDIEIKFNLLHGKIK 640

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           +I+ +LN+GK++      EI E KEI          +      +       +   I  E 
Sbjct: 641 EIEEILNTGKEKN---IKEINEKKEITPLIVKKSINKYMITHPNEEMIIKAENEGINNEL 697

Query: 520 ITVVISNRGWIR 531
           + +++  +  I+
Sbjct: 698 MRILLIGKNEIK 709


>gi|327342921|dbj|BAK09294.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 78

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 650 MKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK 704
           +  ++ V GD  + ++     ++  ++  I +  R   GV++     G  + ++ F 
Sbjct: 11  LAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKG--AQIVTFT 65


>gi|324499709|gb|ADY39883.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1156

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 89/285 (31%), Gaps = 25/285 (8%)

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI----V 312
            +E   +    I    I +  +  +L  +I E      + +L    DE    +++    +
Sbjct: 639 KMELETKKREDIEKANIRHLNEIEKLKVQITEY--EAEVAMLRRHNDELDTQLKMTQAKI 696

Query: 313 LFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA--H 367
           +  +N         + +  +      E    +N+   +   +  +      L++ +   H
Sbjct: 697 VTLENSLTSAQKEIVSLNELNAKLQKEKNEIMNLKQRADHDIDVLKERLRKLEQEIDKLH 756

Query: 368 RREVLFRRSSFRMQAIDRR-----VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--- 419
                   S  +     +        + + L  A   IDE+   +   D+     +    
Sbjct: 757 AENKALHDSEEKANIAYKEESNKVHLLQRELQEAKAEIDELKKRLAQMDEANKERLELAL 816

Query: 420 ---RFSLTENQVDAILNLRLRSL---RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
                         I   R++ L    +L+  ++++E D L      ++  L   ++  +
Sbjct: 817 RTKTPDFGVYDTTYITEARVKELGDKHRLDTERLENERDELARRLRLLEDELAEKQRTID 876

Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +   EI E K  +    +  +      E    ++   ++     E
Sbjct: 877 RQHAEIDEQKRRYEAEIERLKTELANLETKYQNELEDERDRHSHE 921


>gi|168493168|ref|ZP_02717311.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576749|gb|EDT97277.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1179

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRQQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|149194224|ref|ZP_01871321.1| hypothetical protein CMTB2_06481 [Caminibacter mediatlanticus TB-2]
 gi|149135399|gb|EDM23878.1| hypothetical protein CMTB2_06481 [Caminibacter mediatlanticus TB-2]
          Length = 291

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
           +++ ++I    +    AIIR  +       ++  L E    A   L+L  +    + +I 
Sbjct: 173 VIEKIVIPLPILRAEQAIIRANELANKENPNKDELKELLAYAKEQLQLAEVLGYGKVEI- 231

Query: 449 SELDNLLAEKEKIDSLLNSG---KQQWNQIACEIREVKEIFSKST 490
            +  +L  E EK++ +L S    +  +  +  ++  +   F+K  
Sbjct: 232 -DYKDLYEEIEKLEKILASDESTEDIFKTLKEKLSSIMVKFNKPK 275


>gi|301606213|ref|XP_002932720.1| PREDICTED: desmoplakin isoform 2 [Xenopus (Silurana) tropicalis]
          Length = 2252

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 22/198 (11%)

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESI--------FMLSDMETRFPLNMNVLSMGRVPQVM 355
            ESAE     +    R  D   L+  +           + +E                   
Sbjct: 994  ESAEIQACYIELLTRGNDYYRLLHELSKSLEDLKMKNTRIELLEEELRLARDANSDNSQK 1053

Query: 356  PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL-----KGLLIAYLNIDEIIAII--- 407
                             ++     ++ I R+ E+      + L   Y  I E+   I   
Sbjct: 1054 NKYLDQNLQKYQIECNEYKSRILLLEDIKRKAEMDGSSAKQNLEKYYSQITELNDKITRL 1113

Query: 408  ----RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE--LDNLLAEKEKI 461
                 +E + +  +  R  + +N  D +   +   L  +   ++++E        E E++
Sbjct: 1114 TYEIDDEKRRRKALEDRCEMQKNDFDQMQKKKQNDLDAINRQRLETEKIYKEKEYEIERL 1173

Query: 462  DSLLNSGKQQWNQIACEI 479
              LL    Q+  +   E+
Sbjct: 1174 KILLQDEGQRKREYENEL 1191


>gi|116332282|ref|YP_802000.1| siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116125971|gb|ABJ77242.1| Siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 202

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 25/48 (52%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           L +L   + + E   L+  ++++ S+L S + +   +   ++ +K+ +
Sbjct: 145 LEELIPDEHEEEFKELMQLRKELKSILPSPESRRKVLKKLLQNLKDGY 192


>gi|116327060|ref|YP_796780.1| siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116119804|gb|ABJ77847.1| Siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 202

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 25/48 (52%)

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           L +L   + + E   L+  ++++ S+L S + +   +   ++ +K+ +
Sbjct: 145 LEELIPDEHEEEFKELMQLRKELKSILPSPESRRKVLKKLLQNLKDGY 192


>gi|67484124|ref|XP_657282.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56474538|gb|EAL51903.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 1144

 Score = 39.0 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 17/289 (5%)

Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298
           I +     +     + +   E+        V  E         + E + +L   K++  L
Sbjct: 524 IKKLINENKQNVTEKGKQEKEDNKTVESESVNKEF------DTIKESVEKL--NKKVEEL 575

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358
           ++  D+           K+     +   ++  + +    R       +   +        
Sbjct: 576 KERNDK---------IEKDIQERFEEFNKTQTIETLETERQERKKEEIEEFKEKVYETEK 626

Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418
            I          V         Q ID   EI+K +    +N ++   II    K    + 
Sbjct: 627 KIEGITNRIDEMVKKEEIEEIKQNIDNIKEIIKSIDEVKINNEKNKKIIEGIQKENEEIK 686

Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +    E+ +  I N     + KLE   I+ EL+  +   ++  + ++S   + +  + E
Sbjct: 687 KQNECIESDIKEIKNKNEVLVNKLEIETIRKELEEEIKNIKEKPNDMSSIINESSSESTE 746

Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
           I+EV E   ++  +        +        L++ +   +    +I+ +
Sbjct: 747 IKEVIEDIKRNEKVMNESIEELQNKIDKMEQLEEKIKITDANIDIITKK 795


>gi|323442901|gb|EGB00525.1| ferrous iron transport protein B [Staphylococcus aureus O46]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  IR++ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSIRNQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|323440567|gb|EGA98278.1| ferrous iron transport protein B [Staphylococcus aureus O11]
          Length = 664

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 211 EISIEKLLEYIIGPDFPTGGIIVESRE----SIVESYRLGRGGFRVRARWCVEEVGRGSW 266
           +I   KL++ +  P FP      +  +     I       +  F++     +EE  +   
Sbjct: 123 KIDYHKLMKKLKTPIFPVVARTGKGTKHLLGEIKHLGEGYQPHFKINYGEKIEETIKNMC 182

Query: 267 CIVVTEIPYQVQKSRLI--------EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318
            I++TE  +   ++R I         +IA  + ++ +  L  IR++ AE V  V   +  
Sbjct: 183 QIIMTETSHDKYQARFIAIQFLLNNMQIANELNSEVVNKLSSIRNQVAEQVEAVSVRREM 242

Query: 319 SLDPDLLMESI 329
               +  +E++
Sbjct: 243 ERIRNHYIETL 253


>gi|147783375|emb|CAN59884.1| hypothetical protein VITISV_026166 [Vitis vinifera]
          Length = 6311

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 118/348 (33%), Gaps = 31/348 (8%)

Query: 188  ATSIPSHNVQEI-CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246
              +I  +N  E   E    + +   +  ++ +  I   D P     VES + +  +  + 
Sbjct: 4119 NENIQKNNPNEPPKEECSTIDEVSPLEPQENVSVIKCTDSP-----VESDKVMELTEEVP 4173

Query: 247  RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE-KIAELIIAKRIPLLEDIRDES 305
             G  +   R  ++E+        + E+P       +IE ++ E + ++ + + +   +  
Sbjct: 4174 EGAEKAAERENIKELIIEKER-DIKELPAVSTDELVIEVQVLEPVSSENLGVTDP--NMP 4230

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
            AE++ + +   ++      + E++      +      M+VLS     Q   +   + E  
Sbjct: 4231 AENLNLEVEDSSKEPXXSPITEALEEEMSEKQDGEKAMDVLSSVSEMQEENIKEEIMEKA 4290

Query: 366  AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
                         ++ A   + E  +         DE + II    + K +  +  + T 
Sbjct: 4291 DISYS--------KLDAASEKGETEESSSQEAQLDDEPVKIIETSSEDKTLQTNTITETS 4342

Query: 426  NQVDAILNLRLRSLRKLEE-------------YQIKSELDNLLAEKEKIDSLLNSGKQQW 472
             Q +       +    +E                +    +    E ++    L+  K + 
Sbjct: 4343 PQAEEACENTNKESETVERPIADEIEETTGASDTVSESKEQCAEEIDETQKSLSQEKSEE 4402

Query: 473  NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            + I  +I+   E+ S+S   G       E++       ++   + E +
Sbjct: 4403 DIIKEQIKGASEMDSESKYQGVEAVIEEEITAGQAIQAEKPEEQLEEV 4450


>gi|145479721|ref|XP_001425883.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392955|emb|CAK58485.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1068

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 99/290 (34%), Gaps = 23/290 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP-DLLMESIFMLSDMET 337
           +  L EKI +    K     +     +  +       K  ++D    +++          
Sbjct: 721 RKDLEEKIQQSEQEKYDLQSKCAMLSTHIEGMKYKLEKMENVDELKKIIQDQQAQLAEMD 780

Query: 338 RF-----PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
                   LN  +  + +  ++        +    +   +  +   ++  +   +E LKG
Sbjct: 781 ALKLEIESLNDRIAELEKELKLWKQKHEQLDQQYQQLLHVKEQMENKLAMLSSEIERLKG 840

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-AILNLRLRSLRKLEEYQIKSEL 451
            L     I++   +++ + +   +      + E +   + L  +L+ L   E     +E+
Sbjct: 841 KL-----INKTKKLMKMDQELNDLHNQLEDINELKTQLSSLENQLQQLT-DENQNKSAEI 894

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511
             L  +  +I+ LL + +   NQI    +E +          ++ T       +  A L+
Sbjct: 895 TQLKQQIAEIEGLLVNQEDLQNQIKKLEKESQSKDEIIEQFKQKITQL----ESKIAELE 950

Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
               + E    ++S+      +K +      L  K    L+I++   T D
Sbjct: 951 DIKYKYEDKMALLSSE-----VKRYEFKAKKLEDKSN-ELQISVEQLTHD 994


>gi|291232168|ref|XP_002736015.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 1014

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 101/277 (36%), Gaps = 21/277 (7%)

Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL--IIAKRIPLLEDIRDESAEDVRIVLF 314
            V+E  R      +  I  Q      + +I +L  +I ++   +  + ++   D R+   
Sbjct: 428 KVKEETRNEMQKEIDTILAQNGDQ--MNEIGKLSSVITQKNEEIAALEEQQKTDKRLYQE 485

Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE--VL 372
             +   +  + +++I+     E       N L          +D + +E   H R   VL
Sbjct: 486 EIH---NFQIDLKTIYKQHKDEISALKLDNALLHHYKEACKKIDLLEEEVDKHVRHAQVL 542

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR 420
            R+ +           + + L      I++    +  +D              K V V+ 
Sbjct: 543 ERKKALMTTKKSELATLTEHLKKQATIIEQNNVYLCEKDASLRMREENVSEREKKVFVAE 602

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
               E Q +A+  ++ +   +L+   +  +L    A+   I S +N+ K++   +  E+ 
Sbjct: 603 SETRELQKEALEAIKAKKSLQLQYEDLMLQLHESTAQIADIVSDVNNYKEEILTLTLELE 662

Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
           +  +  S+  +  ++     EV        ++ +I++
Sbjct: 663 KSHKENSELKEENQKVLLEGEVIEGALKLQEEEIIKQ 699


>gi|253741816|gb|EES98677.1| Coiled-coil protein [Giardia intestinalis ATCC 50581]
          Length = 1831

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 93/315 (29%), Gaps = 43/315 (13%)

Query: 246  GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
              GG +  ++  VE        +V T+  YQ +  ++ + IA+L    +          S
Sbjct: 1366 NSGGDQENSKMEVEFDTDHENALVETQARYQTRIEQIRKDIADLEQMLKNETERYESSRS 1425

Query: 306  AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV-------------------- 345
            +   R     K         + ++    D + +    +                      
Sbjct: 1426 SLQKRFEDIIKYEETMRIATVANLNAQIDQQDQALSKIEAECNEELRQINDERREALKAV 1485

Query: 346  --LSMGRVPQVMPLDGILKEW-LAHRREVLFRRSS-FRMQ-----AIDRRVEILKGLLIA 396
              +    V +       L+ W    RR +        ++       + +  +  + L   
Sbjct: 1486 EQIGETAVEREKNASATLRGWESMQRRRIATIVGQGHQLSAEYDIEVKKAQKYNEELAKV 1545

Query: 397  YLNIDEIIAIIRNED------KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
             ++I+    I++ +D      + K   +++      +   +L  ++  L+  E +     
Sbjct: 1546 MVDIEATRKILQKKDEQVAFEERKIYDLNKDIKRLGKTQFVLTNQISELKS-EIHPRDEL 1604

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-------EIFSKSTDLGRRRTTFCEVS 503
            + ++    + +   L S   QW+ I   +   +             T   R R    E  
Sbjct: 1605 ISDMRDRVDGLSEKLESLSHQWDTITNTLEAEQAAVKGLTTQIGDETRRLRSRERALENL 1664

Query: 504  RADKATLQQAMIEKE 518
            + D   L       E
Sbjct: 1665 KKDIIVLVTENNPGE 1679


>gi|118371414|ref|XP_001018906.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89300673|gb|EAR98661.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 2948

 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 96/269 (35%), Gaps = 27/269 (10%)

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI--PLLEDIRDESAEDVRIVLF 314
             ++E+   +  +      ++   ++L E I +L          LE    E+ E V  +  
Sbjct: 1000 KIKELETTNNELTSEIFNFEKNDAKLRENIEQLQQEVDDLKQQLEQAGRENEETVSAITL 1059

Query: 315  PKNRSLDPDLLMESIFMLSDMET----RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
             K  S      +  +    + +           + L   +      L    +E+   R  
Sbjct: 1060 FKQNSDSQKQELNILNQKIEEQQKQIQSLLSQKSDLQHLKEVAEENLQLKTEEFDRFRMN 1119

Query: 371  VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            +   +      +  +  EI++ L     +I+E+ + + ++D         F L + Q   
Sbjct: 1120 LDTDQQVMLEGSEQK--EIIESLKK---HIEELESQLSDKD---------FILLQKQ-QE 1164

Query: 431  ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490
            I+ +        E+Y+  SE D L+ + E+++  + S K+Q      E+ E K +  +  
Sbjct: 1165 IIQM------NAEKYESSSEKDKLVNKIEELEESVISMKKQNKLQEQELNECKRLQDEQQ 1218

Query: 491  DLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +  + +     +   +   L Q M  +  
Sbjct: 1219 EELKSQIKQNNIQIENLKQLIQDMQRQID 1247


>gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1]
 gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1]
          Length = 894

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL---------KEWLAHRREVLFR 374
            L E +  L    +RF           +         L         +     ++     
Sbjct: 557 ALKERLQALKKEASRFSEEELQKLKEELEATKREKEELLKRAGEIRDRVAPELKKREQVE 616

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                ++   R +E +KG L     I E +  +  E K         S     ++ + + 
Sbjct: 617 ARIRELEKSARELEKIKGALSEKERIREELNRLEQELKSFKEKERELSQELKALNPVRD- 675

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
           +LR L+K EE   +  + +L+ E  K+   +   ++Q   I  E++
Sbjct: 676 KLRKLQKEEEDGERR-IRSLIEEASKLKGEIEELRRQIGAIREELK 720


>gi|281339560|gb|EFB15144.1| hypothetical protein PANDA_009720 [Ailuropoda melanoleuca]
          Length = 1059

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 116/353 (32%), Gaps = 24/353 (6%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            ++P   + E+ +    ++D      EKLL            +  E++ ++     L   
Sbjct: 456 PNMPEGKILELEQKCAEILDQGRFEREKLLNIQQQLTCSLRKVEEENQGALDMIKHLKEE 515

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE-KIAELIIAKRIPLLEDIRDESAE 307
             ++     +E    G     + E    ++  ++    +   +  ++    E        
Sbjct: 516 NEKLNGFLDLERRNSGVMAKSLEECKATLEGLQVENGSLKAHLENEKQKATETSPAGHTA 575

Query: 308 DVRIVLFPKN--RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + R V       R+    L +    +  ++        +V S+  + +V      LKE  
Sbjct: 576 EGREVQEMLRVTRAEKDQLELSCTELKQELVKAHGEIKHVSSL--LAKVEKDYSYLKEIC 633

Query: 366 AHRREVLFRRSSFRMQAI-DRRVEILKGLLIAYLNIDEIIA----IIRNEDKPKPVMVSR 420
            H+ E L R S    +   +   EI       +   D++       + N      +  + 
Sbjct: 634 DHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESNV 693

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWN 473
             L E + D  L  +L++L K    QIK E +     +  +         +    +Q+  
Sbjct: 694 MKLEEQKSD--LERQLKTLTK----QIKEETEEWRRFQADLQTAVVVANDIKCEAQQELR 747

Query: 474 QIACEIREVKEIFSK-STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
            +   + E +E  ++   +LG  ++    V+        +A      + V  +
Sbjct: 748 SVKRRLLEEEEKNARLQKELGDMQSQGRPVNEESGPPEVEAPGRWHGVYVNRT 800


>gi|187251253|ref|YP_001875735.1| hypothetical protein Emin_0843 [Elusimicrobium minutum Pei191]
 gi|186971413|gb|ACC98398.1| hypothetical protein Emin_0843 [Elusimicrobium minutum Pei191]
          Length = 1721

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 33/224 (14%)

Query: 299 EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP-- 356
           +   D +    + +    +   D    ME +   +          NV +       +   
Sbjct: 42  KQKVDNARMGDKRLKEIYSDPADQQKKMEQVLKYNRFVPSSLRIRNVNAQVAKMNYLDAI 101

Query: 357 -LDGILKEWLAHRREVLFRRSSFRMQAI----------------DRRVEI---LKGLLIA 396
             +  L+E   +RR    +   F+ + +                  R+ I    K   + 
Sbjct: 102 KYEKRLQEDSVYRRAEEIKYIIFQKEELPTIKKFTADFTKAVEEQERLIISAINKNYNMQ 161

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTE-----NQVDAILNLRLRSLRKLEEYQIKSEL 451
              I +  A   +++ P+  ++     TE      + +A+  L+ R   +L    I+   
Sbjct: 162 LKQIRQSAAGFASKEFPQTQILIWTQKTESELKQWKEEALSELKKRKEEELTRQNIQKRY 221

Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIR----EVKEIFSKSTD 491
           +  +A  ++      S  +    +  E++    E+ +++ +  +
Sbjct: 222 EEEIAAIKQQQQ--ASDAKVDQAVMEELKILAAEIMDLYKRKPE 263


>gi|145553100|ref|XP_001462225.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430063|emb|CAK94852.1| unnamed protein product [Paramecium tetraurelia]
          Length = 739

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 79/251 (31%), Gaps = 17/251 (6%)

Query: 276 QVQKSRLIEKIAELIIAKR--IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS 333
           Q  +  L +K+A+ +        LL D   E     + V      +   D  ++ +   +
Sbjct: 216 QKDQEDLKKKLADALKEIEQLKKLLNDKTAECNRLGQQVAQLTQDNQAKDQRIQELERYA 275

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
                  + +N L          L    ++     R +       +    + +      L
Sbjct: 276 QQYQELQIRVNKLEQELDNLQRQLKDKNQQLEDKTRLIDNLNREIQQLKAELQR-----L 330

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL------EEYQI 447
                N++     +  + +     +++    +    A    +L+ L  +      ++ + 
Sbjct: 331 KDQIANLEREKQQLLQQLQQLQNQLAQLQDLQRNSQA----QLQQLNSIANQNDDDKERY 386

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
           + E+D L  E E +   +     Q  ++  +I E  +     T     +    +      
Sbjct: 387 EQEIDELKNEIESLKEEIEELNDQIAKLKRKISEQDDQIDSQTKTISNKIARIKELEDLL 446

Query: 508 ATLQQAMIEKE 518
              ++A+ E+E
Sbjct: 447 NQKEKAIKEQE 457


>gi|93005671|ref|YP_580108.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
 gi|92393349|gb|ABE74624.1| ATPase AAA-2 [Psychrobacter cryohalolentis K5]
          Length = 865

 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 46/302 (15%)

Query: 215 EKLLEYIIGPDFPTG---GIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT 271
           E L + II  D P G     ++      + +    RG F  R +  + ++ +    +++ 
Sbjct: 214 EGLAQKIINGDVPEGLRRKEVLSLDLGALIAGAKFRGEFEERLKAVLSDLSKQEGNVIL- 272

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDI---------RDESAEDVRIVLFPKNRSLDP 322
                      I+++  L+ A +     D          R E        L    + ++ 
Sbjct: 273 ----------FIDELHTLVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRKYIEK 322

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D  +E        +        V     + + +     L   +  +   +   +    + 
Sbjct: 323 DAALER-----RFQKVLVDEPTVEDTIAILRGLKERYELHHGVDIQDSAIIAAARMSHRY 377

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           I  R    K    A   IDE  + +R E   KP  + +      Q    L ++   L+  
Sbjct: 378 ITDRKLPDK----AIDLIDEAASRLRMEMDSKPESLGKLDSRLIQ----LKMQREVLKNE 429

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQW----------NQIACEIREVKEIFSKSTDL 492
           E+   ++E   L A+ E+++       + W           Q+  E+ + +  + K++  
Sbjct: 430 EDAGAQAERKVLDAQIEELEKEYADLNEIWQAEKALVKGSQQLKDELDKARIAYDKASRE 489

Query: 493 GR 494
           G 
Sbjct: 490 GD 491


>gi|68010286|ref|XP_670686.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486176|emb|CAI03164.1| hypothetical protein PB301073.00.0 [Plasmodium berghei]
          Length = 258

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611
               + ++ D  ++ + +G     P  +L   + +    + + ++  +  +V    Y++ 
Sbjct: 37  IFFNYCNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCM-NMKKDDKVVDLVSYENN 95

Query: 612 C------KLLVVSSKGNAFIVEESEIIANTRKGKTF 641
                  K++ +S  G+  ++   EI    ++GK F
Sbjct: 96  SENLKNLKIIFLSKNGHGKMIGVDEIKVQKKRGKGF 131


>gi|268529668|ref|XP_002629960.1| Hypothetical protein CBG03684 [Caenorhabditis briggsae]
          Length = 1660

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 19/251 (7%)

Query: 284 EKIAELIIAKRIP----LLEDIRDESAEDVRIVLFPKNRSLD-PDLLMESIFMLSDME-- 336
           EK+ E+++AK IP     ++           +V+     ++   + ++ S+  L   +  
Sbjct: 234 EKVDEMMLAKLIPFIEHGIKSPMKSFRYSAMVVISQLVLTVKLKEDVLNSLCKLLITKMR 293

Query: 337 ---TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR---VEIL 390
              +   LN  ++   +          LK+ L H  ++   ++   +           IL
Sbjct: 294 SDTSTASLNTLMVVFQQQNVENLSKNTLKKLLRHDEDIDMWKALRDLSERTDTSKFYNIL 353

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
              L+A     E        D           LT  Q  A L L L      EE    + 
Sbjct: 354 WKELVALSRDSESDEQQLAIDVLLETSDDASLLTSEQAKAFLKLIL------EEAMSGNL 407

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           +D     K  I ++     +Q+++I  E++E  +   K            +++       
Sbjct: 408 IDKKNKMKGNIRAIGIRFAKQFDEIYEELKEKDKKALKRIVKEIELEDVVQMASEYIEVA 467

Query: 511 QQAMIEKEPIT 521
            +A  E     
Sbjct: 468 PEAASEDVEEV 478


>gi|71664421|ref|XP_819191.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884482|gb|EAN97340.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 784

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 17/237 (7%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
             + EK  EL  + ++  +     E  ++   V  P +   D +    ++        R 
Sbjct: 388 ENMHEKYMELCRSVKLADVVKAFKEDTKEGTSVELPASLKKDHERRRRALLK---ERKRL 444

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
              +         Q++  +   +     R ++  ++   R+   +R  E +         
Sbjct: 445 EKQLVFARDVHERQLIAEERQRQVEEEMRAKMEAKKEEERLA-HERAAERMALQRRKLGE 503

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ++        E + +    +   L E Q   I   +       E  ++  E +       
Sbjct: 504 LEAFYQKRIQERQARAAEKNARRL-EAQKRQIEQRQE------ERQRLAEEREQRFERVA 556

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           ++       +QQ   I  + +  +E      +  RRR     V   ++A   + + E
Sbjct: 557 ELQ------EQQKLMIRQKHKAKEEKLQLLQEGQRRRQEELHVKLLERAAKSEELRE 607


>gi|170578969|ref|XP_001894619.1| CAP-Gly domain containing protein [Brugia malayi]
 gi|158598691|gb|EDP36537.1| CAP-Gly domain containing protein [Brugia malayi]
          Length = 1262

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 25/221 (11%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-------DVRIVLFPKNRSLDPDLLMES 328
           ++Q   L EK+  L I ++   ++ +  E            R+ +  +  SL   L  + 
Sbjct: 217 RIQHKDLSEKLKSLRIKRKDDYIKLVEFERNRIQLESLLQFRVRIIEEKASLQRKLQEKE 276

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
             +   +E++   + ++  +    +++ ++  + E      +        R Q I+  +E
Sbjct: 277 KELKDALESKKNESDDITELEERLELIAIEKEVAEEKVDILQTEIEAEKQRSQEIEVELE 336

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN--LRLRSLRKLEEYQ 446
           +L+  L             ++ D        +    E Q + +    +RLR +      Q
Sbjct: 337 LLRNKLE------------QSGDSSSEACFVQVKQLEQQNEKLREALVRLRDITG----Q 380

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +  E  +L  E EK+   L S  +   +I     E + I +
Sbjct: 381 LVIEKQDLTKENEKLKDELASLTKMSEKIKENSEEYENIIA 421


>gi|123448346|ref|XP_001312904.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121894768|gb|EAX99974.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3748

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 18/277 (6%)

Query: 255  RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314
            +  ++E  + +  I       + ++S L EK+ EL   + I    +  ++  E+ +  + 
Sbjct: 1259 KTQIDEKNKKNEEIAKNN---EEKQSELDEKLKELQDLEEIKDETEEINQQIEETQKEIE 1315

Query: 315  PKNR-SLDPDLLMESIFMLSDMETRF-PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
             K +   + + L E +  L     +   +  NV  +    + +  D   K  L +  +  
Sbjct: 1316 TKKQQKENNNKLNEELDKLKQDLEQIENVEDNVEKLTEEIEKVKSDIDSKHQLNNDIKEA 1375

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
                   + ++   +E ++ +      I + I  I+ E + K       S +      +L
Sbjct: 1376 NEVVEEELNSLKEELEKIEPVEDKSDEIRKEIVKIQKEIETKKATNCGISESNE----LL 1431

Query: 433  NLRLRSLR---------KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
            N  L  L+         K +  +IK+E++NL    E+      + +Q    +  E+ +++
Sbjct: 1432 NKELNDLKNQLEEIAEEKDDSEEIKAEIENLHKSIEEKKEHNANTQQNNENMKEELSKLQ 1491

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            E F +   +  +           K+ +++       I
Sbjct: 1492 EEFDQIEVVEDKAEEIHSEIEKLKSQIEEKNTTNNDI 1528


>gi|118101498|ref|XP_417697.2| PREDICTED: similar to Coiled-coil domain containing 21 [Gallus
           gallus]
          Length = 783

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 430 AILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +L ++ L+        Q   + ++L  EK +++  L + +     I   ++E  + +++
Sbjct: 390 YMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIRETLKENMQKYAE 449

Query: 489 STDLGRRR 496
                  R
Sbjct: 450 DLKKQEER 457


>gi|328781394|ref|XP_392541.4| PREDICTED: hypothetical protein LOC409012 [Apis mellifera]
          Length = 2525

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429
           +   RR     +  +   E           +D+ +       K +  +       +++ +
Sbjct: 813 QTEIRRMQMEREKQNYDFE------NVQSQLDKALGQSTRMQKERETIQLEVDRLQDKYE 866

Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
               + ++ L+K E    + E D L    E   + +   ++    +  E+  VKE + K+
Sbjct: 867 K-AQMIMQRLQK-ERDGFQEETDKLHERIEFQQNQIAKMQRDKENVLSELELVKERWEKA 924

Query: 490 TDLGRRRTTFCEVSRADKATLQQAMI 515
            +  ++ T   + +  +   L++ + 
Sbjct: 925 HNSHQKLTLERDDALTEIEILKEKLE 950


>gi|148680061|gb|EDL12008.1| outer dense fiber of sperm tails 2-like, isoform CRA_b [Mus
           musculus]
          Length = 555

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + +   +VQ   + ++IA L+   R   +E     S E++   L       +   +
Sbjct: 253 EKIAIEKTELEVQIETMKKQIANLLEDLRK--METHGKNSCEEILRKLHSLEDENEALNI 310

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
                  +                 V  V      L+E    R++ L      ++Q +  
Sbjct: 311 ENVKLKGT----------LDALKDEVASVENELVELQEVEK-RQKTLVEGYRTQVQKLQE 359

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR---SLRKL 442
             E++K        + E   II N++K    +    SL       +  L L     L +L
Sbjct: 360 AAEMVKSRCKNL--LHENNLIITNKNKKLEKVDGNQSL-------LTKLSLEEENHLIQL 410

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +   +K +L+ + AE ++++  L   ++       E++E    +
Sbjct: 411 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEY 454


>gi|87299586|dbj|BAE79636.1| Cdc42 effector, short isoform [Rattus norvegicus]
          Length = 551

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|26389962|dbj|BAC25819.1| unnamed protein product [Mus musculus]
          Length = 462

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E GR      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKGRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +     P               + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPPNCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|73963756|ref|XP_537442.2| PREDICTED: similar to ninein isoform 2 [Canis familiaris]
          Length = 2129

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 100/330 (30%), Gaps = 37/330 (11%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          + +  E  V  Y       +V      E + +     
Sbjct: 599 NMSIEAELVIEQMKEQHHRDLCHLRQELEDKVHHYEKQLDETKVTCEKEQENMKQKYENE 658

Query: 269 VVTEIPYQVQKSRLIEKIAEL------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           V      + Q S L  +IAEL      +   +   +    DE  + ++     +   L  
Sbjct: 659 VHV---LEKQISDLKNEIAELQGQAVVLKEAQRTTICRHEDE-KKQLQRKWDEEKTHLQE 714

Query: 323 DLLMESIFMLS----DMETRFPLNMNVLSMGRVPQVMPLDGILKEWL-AHRREVLFRRSS 377
            L +E    L       E  F      L          + G+ +E    H+ ++      
Sbjct: 715 KLKLEYELKLKASLEQAEESFNQEREGLIQNGAWTEEKVRGLTQELEQCHQEQLKSLMEK 774

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437
             ++  + R E+L+          E +         +     R S  E Q  A       
Sbjct: 775 HSLEKEELRKELLEKHQRELQEGREKM---------ETECTRRTSQIEAQFQADCQKVTE 825

Query: 438 S----LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI-REVKEIFSKSTDL 492
                LR LE      EL  LL ++ +        + QW     E+ +E  E   +  + 
Sbjct: 826 RCENTLRSLES-HYHQELKQLLEQQLE-------ERSQWEFEKDELTQECMEAQEQLKET 877

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            +R      V   ++  L++   E     V
Sbjct: 878 LQREKATSLVLAQEREMLEKTYKEHLNSMV 907


>gi|296238783|ref|XP_002764305.1| PREDICTED: myosin-9-like, partial [Callithrix jacchus]
          Length = 639

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 60/177 (33%), Gaps = 10/177 (5%)

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
           N          +    D +L E      +    R        + R +  K L +A    +
Sbjct: 48  NQCQRVCNLEEKQKRFDQLLAEEKTISAKCAEERDW---AKAEAREKETKALSLARALKE 104

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461
            +   +  E   K   V    L  ++  ++  L+ R L       ++ +++ L  + E++
Sbjct: 105 AMEQKVEPEWLNKQFRVEMEDLISSKGKSVHGLKSRRL-------LEQQVEELKTQLEEL 157

Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +  L   +    ++   ++ +K  F +       ++   +     +    +A +E E
Sbjct: 158 EDELQDTENANLRLEVNLQAMKIQFERDLQDRDEQSEEKQQQLVRQVREMEAELEDE 214


>gi|297279280|ref|XP_002801703.1| PREDICTED: formin-binding protein 1-like isoform 2 [Macaca mulatta]
          Length = 547

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|297472947|ref|XP_002686273.1| PREDICTED: formin binding protein 1-like [Bos taurus]
 gi|296489306|gb|DAA31419.1| formin binding protein 1-like [Bos taurus]
          Length = 564

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 23  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 74

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 75  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 126

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 127 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 163


>gi|227484882|ref|ZP_03915198.1| viral A family inclusion protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237242|gb|EEI87257.1| viral A family inclusion protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 638

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 97/275 (35%), Gaps = 10/275 (3%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
           Q ++ +L + I +L    +         E  ++       K  + + + L E        
Sbjct: 339 QTEQEKLKKVIEDLKKKIKDNSDRIAELEKNKNGSGKGSDKEIAENKNKLKELKQEQEKN 398

Query: 336 ETRFP-LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +     +N N+ +     + +       E     +  L    + + Q  ++  E+ K L 
Sbjct: 399 KASLEEVNKNLENSKNQLKEIDEKIKALEENKADKAELDNLKAEKEQLTNKIAELEKSLA 458

Query: 395 IA-YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
            A   N DE   I +  D+ +  +           + I  L   S RK E   +K++ D 
Sbjct: 459 AADQSNKDETDKIKKELDEARNKLGKVD-------EKIKGLEDDSNRKAEIEALKAQKDE 511

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           L  +  +++    + + +  +I  +++E++ + +  T  G       E    +   L++ 
Sbjct: 512 LAKKIAELEKSKTNLENKDKEIENKVKELEALINSETQKGTDLDKKLEDQNKEIEKLRKE 571

Query: 514 MIEKEPITVVISNR-GWIRSLKSHSVDLSALHFKE 547
             E       I+   G ++     + D +    KE
Sbjct: 572 NEELRKEIDKINKELGKLKKQADDAKDEALKKAKE 606


>gi|195455250|ref|XP_002074632.1| GK23179 [Drosophila willistoni]
 gi|194170717|gb|EDW85618.1| GK23179 [Drosophila willistoni]
          Length = 1427

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 65/197 (32%), Gaps = 10/197 (5%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           +     +       +   + +             +  +L E    +            + 
Sbjct: 654 EEQTNHLEKQLKEHSDLRMQVQAKQDELSKLQQKIQQVLDEHSKLQNAQEL--MDHDYRT 711

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           +  + +  +   +   +  E   +I  E   +        L ENQ   +L LR R   ++
Sbjct: 712 LQDKCDAYEKENLIVQDKLESQNVICAELN-QIKTNLEKDLDENQ-QNLLELRERQQEQI 769

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
           E+ + +SE         ++++     + Q +++  ++ E K++ +   +      +  E 
Sbjct: 770 EQAREQSE------RIVELEANQAEKETQLHELQLKLEEAKQLQANHQENQSNEQSLRET 823

Query: 503 SRADKATLQQAMIEKEP 519
            +  +  L++A   +  
Sbjct: 824 IQKLQCQLKKAEENERN 840


>gi|167900464|ref|NP_694758.2| formin-binding protein 1-like isoform 2 [Mus musculus]
          Length = 551

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|297465592|ref|XP_002703958.1| PREDICTED: formin binding protein 1-like [Bos taurus]
          Length = 560

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 23  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 74

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 75  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 126

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 127 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 163


>gi|291231194|ref|XP_002735551.1| PREDICTED: janus kinase and microtubule interacting protein 1-like
           [Saccoglossus kowalevskii]
          Length = 3679

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 75/243 (30%), Gaps = 18/243 (7%)

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345
           I ++   + + +      E    +  +   +N+ L  + + E +     +  ++ + +  
Sbjct: 50  IKKIKRERVVDIRSAREKEYQRAMMAISDLRNK-LHQEKINELLAQKDTLTRQYEMEVKK 108

Query: 346 LSMG-------RVPQVMPLDGILKEWLAHRREVLFR---RSSFRMQAIDRRVEILKGLLI 395
           +             ++      L   + HR     +   +  F ++    + EIL+ L  
Sbjct: 109 IVKQKEDSLGKMQSELHRTKEDLLVRMKHRIAADAQDEVKKKFEVERSKMQQEILE-LKE 167

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL-RLRSLRKLEEYQIKSELDNL 454
           +   I+     I + ++ +            Q   IL + +LR   + +  ++  EL   
Sbjct: 168 SKRKIENEFNQISDAERRRIAENKW-----IQDKHILEMEQLRKETRRDICRMVDELKKK 222

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
                +++  +        ++  E   +K+  S    +                +     
Sbjct: 223 EKLVGELEKEVGHHSGHSRKLQAEKESLKDELSNIMKMADTWERSSTPGICSPRSKSPPT 282

Query: 515 IEK 517
             +
Sbjct: 283 SPR 285


>gi|194211102|ref|XP_001491854.2| PREDICTED: formin binding protein 1-like [Equus caballus]
          Length = 568

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 34  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 85

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 86  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 137

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 138 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 174


>gi|194745706|ref|XP_001955328.1| GF18707 [Drosophila ananassae]
 gi|190628365|gb|EDV43889.1| GF18707 [Drosophila ananassae]
          Length = 1261

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 71/209 (33%), Gaps = 15/209 (7%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             ++++ I   +    +  +  + D+    VR +     R       M+ + +L+  E  
Sbjct: 625 NRKILDTIENALKQLNVERV-QMHDQYKTKVRKLTEELIR--LEQEEMDGLQVLNCREQE 681

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                ++L   +  + + +D + ++  A + ++  ++  F         E     L    
Sbjct: 682 LIARKDMLMWEKNNEKVQIDIVCRQISAFQTQLDSKKRDFSEYVAKELQE-----LQDCG 736

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458
            +DE+   I                   QV   L+L      K    +   E+  L  + 
Sbjct: 737 KLDEMGMKI-------EEGTPLNDELLLQVSDSLDLFAAQFIKETVRRNNEEIRKLDEQI 789

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
            + + +LN+   +  ++   + E++    
Sbjct: 790 AEKERILNASTSKIAKVDETMLEIQAQLE 818


>gi|148709852|gb|EDL41798.1| centrosomal protein 55, isoform CRA_d [Mus musculus]
          Length = 480

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 45  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 103

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 104 RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 163

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 164 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 223

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 224 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 283

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 284 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 343

Query: 499 F 499
            
Sbjct: 344 E 344


>gi|297664411|ref|XP_002810642.1| PREDICTED: formin-binding protein 1-like isoform 2 [Pongo abelii]
          Length = 547

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|313228601|emb|CBY07393.1| unnamed protein product [Oikopleura dioica]
          Length = 1996

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 76/276 (27%), Gaps = 14/276 (5%)

Query: 218  LEYIIGPDFPTGGIIVESRESI-----VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
            L  I        G   E           +       G   RA   +E +G     +++  
Sbjct: 1437 LPRIPEVKRKRHGEFKEKTVGNVRRMERDERESEAEGPTRRAIRHMERIGITRPAMIIDN 1496

Query: 273  IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM- 331
            +     +    E               + RD      +I+ +    S     ++  +   
Sbjct: 1497 VEINFTEDEQQEISVAAYQYSMFEGTRNNRDSDKAAWKILEYLLKDSAQTTEIIGRVAEG 1556

Query: 332  LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                       M +  +    ++       +E +      +                   
Sbjct: 1557 DGQFNRSAIRVMIMRLLKLTGRLEITKQDEQENVKINEHGIANGKEQDKNKTTEHEIADG 1616

Query: 392  GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
              L A  +  E    I   D P+  ++    LT       LN ++          I+ ++
Sbjct: 1617 KELQAQEDTIEGELKICEMD-PETKILKEKILTLE-AKVKLNEKIMDYA----QTIEEDV 1670

Query: 452  DNLLAEKEKID--SLLNSGKQQWNQIACEIREVKEI 485
              L  +  +++   +L + K+ WN I     EVKEI
Sbjct: 1671 KILDKKVAEMERMEILGNVKKMWNTIKEIKEEVKEI 1706


>gi|158286601|ref|XP_308829.4| AGAP006932-PA [Anopheles gambiae str. PEST]
 gi|157020546|gb|EAA04098.4| AGAP006932-PA [Anopheles gambiae str. PEST]
          Length = 1908

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 10/258 (3%)

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +    + + E     +  +  EK++E +  K   L  +I     E +  V    +     
Sbjct: 699 KRRMTMQLEENNMLREAKQFSEKMSEEMQKKNDHLRSEISKLQEEKITSVSVISSVDSSR 758

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR-MQ 381
              +          +       ++S   V   +  D I       R     +R     ++
Sbjct: 759 RSSLVYEQEFRSANSSLHDMTTIISGPSVEAQLRNDLIRA-----REGENEQRKRAENLE 813

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441
            +  R+E +   L A          +      K        L+  +  AIL+ +      
Sbjct: 814 EVVDRLEKVIAQLKASGTGLSGAETLLE----KQKECLEDKLSAIREQAILDKQSARTAN 869

Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           L  ++++ ELD L  EK  +   +     +  ++  E  E++    +  +    R    E
Sbjct: 870 LSLWKLEKELDALRGEKSILTRRIEQSDDRVTRVRHEKEELEFKMKQQQETIANRDKQIE 929

Query: 502 VSRADKATLQQAMIEKEP 519
             RAD + L+  + ++  
Sbjct: 930 DLRADLSALKDELRKERE 947


>gi|307706717|ref|ZP_07643522.1| chromosome segregation protein SMC [Streptococcus mitis SK321]
 gi|307617802|gb|EFN96964.1| chromosome segregation protein SMC [Streptococcus mitis SK321]
          Length = 1179

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 11/192 (5%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---ATIASEKQNLEAEIEEIKSNKNAIQERYQNLQEEVAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   +K+  +  +
Sbjct: 821 QKRYEVADIERLGKELDNLNIEQEEIQRLLQEKVDNLEKVDTELLGQQAEEAKTQKMNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDISSHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLS 567
              T    +  +
Sbjct: 937 SQLTDQYQISYT 948


>gi|300214419|gb|ADJ78835.1| Chromosome partition protein [Lactobacillus salivarius CECT 5713]
          Length = 861

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 298 LEDIRDESAEDVRIVL-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356
           +++ ++E  E VR        +++           LS+++ ++  N++ L+  R  +   
Sbjct: 283 IDNEQNELTELVRQEEKISGQQNMSRQEEKFQKERLSELQEQYSANLDNLTEIRTGKQ-S 341

Query: 357 LDGILKEWLAHRREVLFRRSSFR--MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
           +   +      R ++  +       +  +    EIL+ L        +   ++ N +   
Sbjct: 342 VKEKIANLEDDREKLSKKILELEKIIDNVKEPEEILEKLKSELNRKIQEKNLVNNSNNYI 401

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
              +     ++NQ +                 I +E + L  + +++ + LN+   ++ +
Sbjct: 402 EQELEE--KSQNQAE----------TNKNIQNITNEKNKLKLQLDELKTTLNNKDNEYQE 449

Query: 475 IACEIREVKEI 485
           I   ++E+K  
Sbjct: 450 IVTTLKELKIK 460


>gi|212550538|ref|YP_002308855.1| M23 family peptidase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548776|dbj|BAG83444.1| M23 family peptidase [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 415

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 69/205 (33%), Gaps = 15/205 (7%)

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
            +  D ++ +  +     ++ R   N  +       +    D +     A      F R+
Sbjct: 90  KKIQDKEIQIAQLERNLHLKKR---NYAIAIQIVYQEKNNQDQLFFILSASNIVQSFHRA 146

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
            +  +    R    + ++I    +     +++ + + K  +V+     E        LR+
Sbjct: 147 LYMKEYGKWRRAQGEEIIIQQNKVIAEKQVLKYDVQTKTNLVNIKKNEEE------KLRI 200

Query: 437 R-SLRKLEEYQIKSELDNLLAEKEKID---SLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           +  ++  E   +K     L AE +K      +L   ++    I  E+   K+  ++ +  
Sbjct: 201 QERIKGAEIENLKKNTKKLQAEIDKKKRQAEVL--EREIARIIKEELAATKKAAARGSVK 258

Query: 493 GRRRTTFCEVSRADKATLQQAMIEK 517
            +  T        ++ TL     + 
Sbjct: 259 RKSETADGYAMTKEEQTLSTDFAKN 283


>gi|145538019|ref|XP_001454715.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422492|emb|CAK87318.1| unnamed protein product [Paramecium tetraurelia]
          Length = 565

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 49/281 (17%)

Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
            + ++   E+        +  +  Q+   +L +++    + +    +  ++D        
Sbjct: 238 NKGKYTQRELSYKFEQAEIKLLTLQISNDQLKQQLQHYQLDQ--QTISQMKD-----TIS 290

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            L  K+       L+     L          +  L      +        +E+L ++  +
Sbjct: 291 TLELKS-----QSLLNQKDALQQENDLLNQKVENLEKQCKDKQKT-----QEFLIYQNSL 340

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTEN---Q 427
                 F+ +       IL  L      + E I I R  +D+ +         ++N   Q
Sbjct: 341 ENELIKFKQEQAQSHQTIL-SLNNTIQQLKEQINIFRTQKDQAENAFQLELVQSQNELQQ 399

Query: 428 VDA--------ILNLRLR-SLRKLEEYQ-----------IKSELDNLLAEKEKIDSLL-- 465
             A        I  ++ R   RK+EE              ++++ NL  + ++ + +L  
Sbjct: 400 ATARYQVLWQEISEMKDRLEQRKIEEDSHYMLSNAEKVLFETQITNLNDKIKEYEQILLQ 459

Query: 466 -----NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
                 S + Q NQI  E    K+   K+  L  +   F E
Sbjct: 460 NDSKIKSLELQINQIQQEKENYKQQLEKNGSLSSKSLDFQE 500


>gi|41581463|ref|NP_060207.2| formin-binding protein 1-like isoform 2 [Homo sapiens]
 gi|332809540|ref|XP_003308267.1| PREDICTED: formin binding protein 1-like isoform 1 [Pan
           troglodytes]
 gi|41057623|gb|AAR98814.1| transducer of Cdc42-dependent actin assembly-1 [Homo sapiens]
          Length = 547

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|332020813|gb|EGI61211.1| Rootletin [Acromyrmex echinatior]
          Length = 2102

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 82/244 (33%), Gaps = 14/244 (5%)

Query: 279  KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
             +R+   + +L+       +    +E  ++ + +            ++E +   +     
Sbjct: 911  NARINRNLKDLVKDNEEKQVLLETNE--KEFQRLQEQLASMRTEKEILEGVLFDTQT--- 965

Query: 339  FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAY 397
               N+    + +      L  +L +  + + +V   R +  +   ++R  +I + L    
Sbjct: 966  ---NLEATHVKKTQLEKELKELLIKQESFKGQVT--RLTKELDNSEKRAQDIKQSLTQQS 1020

Query: 398  LN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456
             + I E   II N  +     + + +  + QV   L  RL+      E +   E++ L  
Sbjct: 1021 GDQIAEFQQIISNMKRQSEDSIKKINDEKEQVKISLEKRLQQSLSQVEGEKNEEINQLQQ 1080

Query: 457  EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
              E++   + +  +Q  +    +R   +           +    E        L++    
Sbjct: 1081 RIEELQQHIENLCKQHEE--ALLRAENDKQQALLIAHHDQQALIEKIDTIMRELEEEKNT 1138

Query: 517  KEPI 520
             E +
Sbjct: 1139 LERV 1142


>gi|244793559|ref|NP_079990.2| outer dense fiber protein 2-like isoform 2 [Mus musculus]
 gi|148680062|gb|EDL12009.1| outer dense fiber of sperm tails 2-like, isoform CRA_c [Mus
           musculus]
          Length = 589

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + +   +VQ   + ++IA L+   R   +E     S E++   L       +   +
Sbjct: 287 EKIAIEKTELEVQIETMKKQIANLLEDLRK--METHGKNSCEEILRKLHSLEDENEALNI 344

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
                  +                 V  V      L+E    R++ L      ++Q +  
Sbjct: 345 ENVKLKGT----------LDALKDEVASVENELVELQEVEK-RQKTLVEGYRTQVQKLQE 393

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR---SLRKL 442
             E++K        + E   II N++K    +    SL       +  L L     L +L
Sbjct: 394 AAEMVKSRCKNL--LHENNLIITNKNKKLEKVDGNQSL-------LTKLSLEEENHLIQL 444

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +   +K +L+ + AE ++++  L   ++       E++E    +
Sbjct: 445 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEY 488


>gi|145532962|ref|XP_001452231.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419919|emb|CAK84834.1| unnamed protein product [Paramecium tetraurelia]
          Length = 769

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 57/175 (32%), Gaps = 6/175 (3%)

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              +         +N   +    Q    D  +    +  ++    +   ++  + RR E 
Sbjct: 1   MQKTHQRQSKSPLVNNKVIRTKTQHTSKDESINLDNS-IKDQTLEKLFLQLDQLRRRHEQ 59

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLTENQVDAILNLRLRSLRKLEEY 445
            K  +    N    I   + +   +            L + Q   I   ++   ++ +  
Sbjct: 60  EKKEMNDTFNYQLQIKSNQLQKSAQEFQQKNLLLESLLFQEQAKTIHLTKIIQEKQ-KST 118

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            +  E +    + ++++S+L   +++   I  ++ +    F    ++  + +T  
Sbjct: 119 ALDQEKEQYKNKIQQLESILQDSQRKNQIIPNKLIQKDTSFKILIEIINKVSTNI 173


>gi|68348709|ref|NP_001020119.1| formin-binding protein 1-like isoform 1 [Homo sapiens]
          Length = 551

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 17  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 69  CVAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 120

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 121 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 157


>gi|124505091|ref|XP_001351287.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
 gi|8052285|emb|CAB39037.2| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
          Length = 1946

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 98/272 (36%), Gaps = 20/272 (7%)

Query: 244  RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
             + +  +++      E   + +  I   +      K  +I K    +  K   LL++ ++
Sbjct: 1276 EIQKLQYKINIHIEKETEIKKTNDIEKEKNTKLSNKFDIINKENNNLHNKIETLLKNEKE 1335

Query: 304  ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363
             S E+V+++   K   ++ + L   +      + +   N N ++   +            
Sbjct: 1336 ISTENVKLIETNKTLYIENEKLSNDLKNTLKEKEKIQENYNKINKEHIK----------- 1384

Query: 364  WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423
                   ++    S++        EI + +     N+D+ IA I+ E         +   
Sbjct: 1385 -------IIEELQSYKEIKEKHMKEITQ-IKEQIHNLDKHIAQIQIEKNNFEESYLKEKN 1436

Query: 424  TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
               ++  IL  + + L   E  +  +++  +   ++  +++L +  ++ N +  E + V+
Sbjct: 1437 ENEKMSNILEEKYKELSTYEIDKNINKIK-IEDLEKDKENILLTKNEEINNLKEEYKMVQ 1495

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +    +  L  ++    +    +K  +     
Sbjct: 1496 QHLEDTNVLYEKQKLAIDTITKEKNNIINECD 1527


>gi|68077105|ref|XP_680472.1| dynein heavy chain [Plasmodium berghei strain ANKA]
 gi|56501404|emb|CAH94984.1| dynein heavy chain, putative [Plasmodium berghei]
          Length = 4889

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             +N  ++  G     M     L       + +  +R     Q       +  GL     +
Sbjct: 3348 HINQVLMKKGSKYNYMTPRDFLDFIKHFLKIIDEKREEISAQKK----HLNAGLKK-LKD 3402

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
             +  +A +RN    K  +     L E  ++A   ++L   ++ E    K + + L  + +
Sbjct: 3403 TEVQVAELRNSLANKKKI-----LAEKDIEAEEKMKLMIEQQTETEDKKKKAEILAKKLD 3457

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +   ++   +Q+   I  E+ EV+  F ++ D
Sbjct: 3458 EQFIII---EQRKEIIRKELSEVEPKFREAED 3486


>gi|323348649|gb|EGA82892.1| Spc105p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 832

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 328 SIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGI---LKEWLAHRREVLFRRSSFRMQAI 383
            +    D +  FPLN  N +   R+  V     I   + E  A R + L+R  +      
Sbjct: 470 KLIDDLDKKVNFPLNSFNFVENQRIDNVFSAFYIDIPILEVEAFRCKELWRSINESKDKF 529

Query: 384 DR-RVEILKG----LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +I K     LL  Y + DE +  +  +     + + +              R + 
Sbjct: 530 KDFEAQIDKSHPPLLLQEYFSSDEKMKQLMRD----QLQLVKGYSKLEAAMEWYEWRKKQ 585

Query: 439 LRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L  LE         +K E + L  E EK++S+    ++    I  EIR +K + S S   
Sbjct: 586 LNGLELILAENLNTLKREYEKLNEEVEKVNSIRGKIRKLNEAIKEEIRSLKNLPSDSYKP 645

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
                   E  + +      ++      T
Sbjct: 646 TLMNRXKIEAFKQELMEHSISLSSSNDFT 674


>gi|301020883|ref|ZP_07184942.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300398408|gb|EFJ81946.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 802

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 95/315 (30%), Gaps = 21/315 (6%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
             D         S++ +     +        ++  + +  +    I +  I +   +S+ 
Sbjct: 464 CKDCAIDPNTNYSKDGLTAQKYMYMDLDGAISKEQIPDFLKKVSAINIDVINFYNSESKT 523

Query: 283 IEK-------IAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSD 334
            EK       +   +    +           ++ RI     K+   +   ++ ++     
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEGKYHFDNSRIEFFIFKDMQENAQNIINNMIENDR 583

Query: 335 METRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKG 392
           ++    + N  +               +++ +    +   R  +F  + +    E + + 
Sbjct: 584 IKFVESIINKMIPPPDGTILTDNPTEFIQKKIKESHKESVRNVTFEYKELAPIFEGVEEK 643

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + A  N  E I   + +   +    +R     +   AI               +    +
Sbjct: 644 QIKALSNQLEHIKSFKTDYDSRLNKYARDFHYFSSAFAI-----------NREDLLKNYE 692

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + +  +  D LL   K+   +    + + + +F    D    +    EV+  ++     
Sbjct: 693 EIRSSIKDYDDLLREIKELTIKRDKSVDDKRTLFDNKRDKWNSQEVQDEVAALNQKIADD 752

Query: 513 AMIEKEPITVVISNR 527
               +  + +V ++R
Sbjct: 753 DNKIRSNLNIVKNHR 767


>gi|297297816|ref|XP_001098065.2| PREDICTED: ninein-like isoform 1 [Macaca mulatta]
          Length = 2045

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 97/304 (31%), Gaps = 24/304 (7%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVHHYEKQLDETIVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
           + T    + Q S L  +IAEL     ++ +         +E  + ++  L  +   L   
Sbjct: 662 MHT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQAKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              +  ME    L+  +  F      L      +        +    H+ ++        
Sbjct: 719 LRLEHEMELKARLAQAQASFEQEREGLQSRAWTEEKVRGLTQELERFHQEQLTSLVEKHT 778

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL-- 434
           ++  + R E+L+          E +    N    +           +TE    A+ +L  
Sbjct: 779 LEKEELRKELLEKHQKELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 838

Query: 435 -------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                   LR  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+  
Sbjct: 839 RYRQELKDLREQQREEKSQWEFEKDELTQECAEAQELLKETLKREKATSLVLTQEREMLE 898

Query: 488 KSTD 491
           K+ +
Sbjct: 899 KTYE 902


>gi|297297812|ref|XP_002805084.1| PREDICTED: ninein-like isoform 2 [Macaca mulatta]
          Length = 2132

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 97/304 (31%), Gaps = 24/304 (7%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y        V  +   E + +     
Sbjct: 602 NMSIEAELVIEQMKEQHHRDICCLRLELEDKVHHYEKQLDETIVSCKKAQENMKQRHENE 661

Query: 269 VVTEIPYQVQKSRLIEKIAEL-----IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP- 322
           + T    + Q S L  +IAEL     ++ +         +E  + ++  L  +   L   
Sbjct: 662 MHT---LEKQISDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQLQAKLEEEKTHLQEK 718

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
              +  ME    L+  +  F      L      +        +    H+ ++        
Sbjct: 719 LRLEHEMELKARLAQAQASFEQEREGLQSRAWTEEKVRGLTQELERFHQEQLTSLVEKHT 778

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL-- 434
           ++  + R E+L+          E +    N    +           +TE    A+ +L  
Sbjct: 779 LEKEELRKELLEKHQKELQEGREKMETECNRRTSQIEAQFQSDCQKVTERCESALQSLEG 838

Query: 435 -------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                   LR  ++ E+ Q + E D L  E  +   LL    ++    +  + + +E+  
Sbjct: 839 RYRQELKDLREQQREEKSQWEFEKDELTQECAEAQELLKETLKREKATSLVLTQEREMLE 898

Query: 488 KSTD 491
           K+ +
Sbjct: 899 KTYE 902


>gi|116204327|ref|XP_001227974.1| hypothetical protein CHGG_10047 [Chaetomium globosum CBS 148.51]
 gi|88176175|gb|EAQ83643.1| hypothetical protein CHGG_10047 [Chaetomium globosum CBS 148.51]
          Length = 883

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 109/344 (31%), Gaps = 52/344 (15%)

Query: 163 SEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII 222
              V+  ++      + T   A G     P    +    + L L     + I++  ++ +
Sbjct: 392 WGSVIDQARALASRMDSTVSDAEGWHDDSPPWRPKSALGSYLWLAAKLYLLIDEAADWRL 451

Query: 223 GPDFPTGGIIVESRESIVESYRLGRG----GFRVRARWCVEEVGRGSWCI---------- 268
             D       +  R ++ + Y           R +  +    +      I          
Sbjct: 452 VNDHLGTSSPLHPRRTLEQYYNWTSEDTAHRDRQQVVYRGTRLRSDPEAIPRVIMVDQIW 511

Query: 269 --VVTEIP---YQVQKSRL-------IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             V+ E P   ++  + RL       I  I +L +       +   D +  D+R  +   
Sbjct: 512 LWVLDENPSAIHRAIRDRLAGMDGSHITSIYDLTLIIIDECSKVFFDRTKPDLRPEVVDI 571

Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR-REVLFRR 375
             S     +       ++   RF  ++  ++     Q    + +L++ L  +        
Sbjct: 572 FGSA----ISNISEKKTEAYERFGRDVKRMNNQDPLQ--TDEELLRKTLNIKFEWSALME 625

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
           +   +  +    EI    +   ++ ++ +  + +E + KP         E     I +++
Sbjct: 626 AQNVIDQLQIMQEIYSQQITVMIDFEKALRGLSSESQVKPASAL-----ERATQLISDMK 680

Query: 436 LRSLRKLEEYQIKSELDNLLAEKE----KIDSLLNSGKQQWNQI 475
           LR            EL +L   +     ++  LL+  +QQ   I
Sbjct: 681 LRR----------DELADLEKRQANTRSQLRELLDMKQQQAGII 714


>gi|291398485|ref|XP_002715531.1| PREDICTED: formin binding protein 1-like [Oryctolagus cuniculus]
          Length = 576

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 46  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 97

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
               F +      +  +        ++ E +AHR      R +  +   +R++ + +G  
Sbjct: 98  CIAFFNI------LNELNDYAGQREVVAEEMAHRVYGELMRYAHDL-KTERKMHLQEGR- 149

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            A   +D     + N  K            +   + +
Sbjct: 150 KAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERL 186


>gi|23099946|ref|NP_693412.1| hypothetical protein OB2491 [Oceanobacillus iheyensis HTE831]
 gi|22778177|dbj|BAC14447.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 460

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------RIPLLEDIRDESA 306
           + R  +E+  + +   +      Q      I  I   +         +   +++  DE  
Sbjct: 48  KERQEIEDSKKDTESKMQENKKEQNSVETEINSIDSELEDTQKQIETKQTEIDNTNDEIN 107

Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
                V   K R  + +  ++ +    +       N  +        +  L+ I      
Sbjct: 108 SLTEKVEELKERMKELEEEIKLLKERIEKRDELLKNRLLSIQQNGGDIKYLEVIFGASSF 167

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT-E 425
                     +  M      +E  +          + +   + E + K + V     + E
Sbjct: 168 GDFISRSTAVNTIMDQDKEIMEEQERDKQTLEENKKEVVASKEEVEEKKLTVEEKKKSLE 227

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            Q D +L L+     KL +   + E  +  L+ E E+++ +  S +++   I+ E
Sbjct: 228 GQHDELLALKD----KLNDQVAEKETLMAELVDEHEELEEIKLSAEEEQQLISDE 278


>gi|229011309|ref|ZP_04168501.1| hypothetical protein bmyco0001_17600 [Bacillus mycoides DSM 2048]
 gi|228749965|gb|EEL99798.1| hypothetical protein bmyco0001_17600 [Bacillus mycoides DSM 2048]
          Length = 223

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +    + K +  A  N+DE   +++NE +         +  +N ++ + + +L+   K  
Sbjct: 75  EHNEAVSKKIEQATANVDEREKVLKNEKEQLEKAQKETTSVQNNIEKLEDKKLQKQAKTV 134

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           E   K+  D      E     L + K+ + ++  +  ++KEI  K
Sbjct: 135 EESYKNRYDAFQKMNENYTKALATEKELYEKLKVKETKLKEIGEK 179


>gi|229132848|ref|ZP_04261693.1| hypothetical protein bcere0014_17770 [Bacillus cereus BDRD-ST196]
 gi|228650675|gb|EEL06665.1| hypothetical protein bcere0014_17770 [Bacillus cereus BDRD-ST196]
          Length = 223

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 45/105 (42%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +    + K +  A  N+DE   +++NE +         +  +N ++ + + +L+   K  
Sbjct: 75  EHNEAVSKKIEQATANVDEREKVLKNEKEQLEKAQKETTSVQNNIEKLEDKKLQKQAKTV 134

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           E   K+  D      E     L + K+ + ++  +  ++KEI  K
Sbjct: 135 EESYKNRYDAFQKMNENYTKALATEKELYEKLKVKETKLKEIGEK 179


>gi|244793602|ref|NP_001156011.1| outer dense fiber protein 2-like isoform 3 [Mus musculus]
 gi|18043255|gb|AAH20075.1| Odf2l protein [Mus musculus]
          Length = 546

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + +   +VQ   + ++IA L+   R   +E     S E++   L       +   +
Sbjct: 244 EKIAIEKTELEVQIETMKKQIANLLEDLRK--METHGKNSCEEILRKLHSLEDENEALNI 301

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
                  +                 V  V      L+E    R++ L      ++Q +  
Sbjct: 302 ENVKLKGT----------LDALKDEVASVENELVELQEVEK-RQKTLVEGYRTQVQKLQE 350

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR---SLRKL 442
             E++K        + E   II N++K    +    SL       +  L L     L +L
Sbjct: 351 AAEMVKSRCKNL--LHENNLIITNKNKKLEKVDGNQSL-------LTKLSLEEENHLIQL 401

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +   +K +L+ + AE ++++  L   ++       E++E    +
Sbjct: 402 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEY 445


>gi|12852604|dbj|BAB29473.1| unnamed protein product [Mus musculus]
          Length = 589

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             I + +   +VQ   + ++IA L+   R   +E     S E++   L       +   +
Sbjct: 287 EKIAIEKTELEVQIETMKKQIANLLEDLRK--METHGKNSCEEILRKLHSLEDENEALNI 344

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
                  +                 V  V      L+E    R++ L      ++Q +  
Sbjct: 345 ENVKLKGT----------LDALKDEVASVENELVELQEVEK-RQKTLVEGYRTQVQKLQE 393

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR---SLRKL 442
             E++K        + E   II N++K    +    SL       +  L L     L +L
Sbjct: 394 AAEMVKSRCKNL--LHENNLIITNKNKKLEKVDGNQSL-------LTKLSLEEENHLIQL 444

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +   +K +L+ + AE ++++  L   ++       E++E    +
Sbjct: 445 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEY 488


>gi|291406607|ref|XP_002719641.1| PREDICTED: thyroid hormone receptor interactor 11 [Oryctolagus
           cuniculus]
          Length = 1957

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 11/274 (4%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS-DMET 337
           K +L EK+ +L+         +   +        L  +N      +  E +  LS D  +
Sbjct: 573 KQKLEEKVEDLVDQLNKSQKSNTSIQKENLELRELICQNEEALSRVRNELLQSLSQDFHS 632

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
            F      L  G+  +   L   L E    +     ++ +F ++  + ++  L       
Sbjct: 633 DFSEK---LPKGKETEARNLQQNLSEIE--QLNGKLKKVAFDLKMENEKL--LSAYEEVR 685

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
             ++E +A+       K  +V      E Q +A L    +S   L    ++ E ++L+  
Sbjct: 686 HQLEESVAVNHQISVEKDSVVEPPRRAEGQAEAGLRGAEQSGEGLGPAALQLECEHLIQL 745

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ---AM 514
            ++ D  +   K+   Q+  E +E KE+ S S +  ++ T   +        L++    +
Sbjct: 746 SQEKDLEIADLKKHIEQMGTEHKETKEMLSSSLEEQKQLTQLIDEKENLIEQLKERSSVL 805

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548
            E+            +        D S    KE 
Sbjct: 806 QEELDKYTQALKSNEVLRQTLEEKDRSLGSMKEE 839


>gi|225458603|ref|XP_002282770.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 844

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                  V + +   G + +W AHR + + RR     +    R +I +    A    D  
Sbjct: 185 TAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVERELEKAREDIPEYRKQAEDAEDAK 244

Query: 404 IAIIRNEDKPK------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
              ++  D  K       + + R    E+Q      L    + ++E+           A+
Sbjct: 245 TQALKELDSTKRLIEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADEASVAAKAQ 304

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFS---KSTDLGRRRTTFCEVSRADKATLQQAM 514
            E   +   +       +  E+  +++ ++      D+  +R      +  +     + +
Sbjct: 305 LEVAKARHAAAVADLKAVKDELEALRKEYASLVTEKDVAVKRAEQAVSASKEIEKTVEEL 364

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551
             +   T           L++    +     KE DSL
Sbjct: 365 TIELIATKEALESAHATHLEAEEQRIGMAMVKEQDSL 401


>gi|149007090|ref|ZP_01830759.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127163|ref|YP_003879194.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           670-6B]
 gi|147761394|gb|EDK68360.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484225|gb|ADM91094.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           670-6B]
          Length = 1179

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 8/173 (4%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE---EYQIKSELDNL 454
            N++  I  I++                 Q   +L  +L+  ++ E     ++  ELDNL
Sbjct: 781 QNLEAEIEEIKSNKNAIQERYQNLQEEVAQAR-LLKTKLQGQKRYEVADIERLGKELDNL 839

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E+E+I  +L        ++  E+   +   SK+     ++    +    D    Q   
Sbjct: 840 NIEQEEIQRMLQEKVDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDD 899

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           I          N  WIR           +  +    L+   +  T    +  +
Sbjct: 900 IASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQNQLTDQYQISYT 948


>gi|145533366|ref|XP_001452433.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420121|emb|CAK85036.1| unnamed protein product [Paramecium tetraurelia]
          Length = 746

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           L+   D   E + I +F     +  ++ M  +      E    L         +  +   
Sbjct: 282 LDHSYDLFEEQILIYIFHDVAGV--EVCMNYLIDDIMNEEIEELKFFNSIPNFIKDLDNF 339

Query: 358 DGILKEWLAHRREV------LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411
              L+  + H R +         ++   +    R +EI    +I   N            
Sbjct: 340 GVELRHLVKHLRLIIKSLTDKTNQNLIDLNKAHRSLEIEVKKIIELFNEI---------- 389

Query: 412 KPKPVMVSRFSLTENQVDAIL-NLRL-RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469
              P MV++  L+ NQ   IL  ++L  +  + E  +I  E   L  E  K++ L+    
Sbjct: 390 ---PAMVTKMQLSINQARIILQKIKLPHNNYRAENQEIYDEYLKLQEENTKLEQLIQRRI 446

Query: 470 QQWNQIACEIREVKEI 485
            +   I+    E K I
Sbjct: 447 NKAAIISQVCEEQKNI 462


>gi|210620550|ref|ZP_03292098.1| hypothetical protein CLOHIR_00041 [Clostridium hiranonis DSM 13275]
 gi|210155264|gb|EEA86270.1| hypothetical protein CLOHIR_00041 [Clostridium hiranonis DSM 13275]
          Length = 638

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 4/158 (2%)

Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLS-MGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379
             ++L E++   +        +   L+ +     V+  +G+ +    +   +  +R    
Sbjct: 484 SKEVLEEALVNYTGTIFTISHDRYFLNKVVDKILVLSENGVTEYLGNYDYYIEKKRQLSE 543

Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
           M   +      K  L      ++    I    K K   +        +  A L++ L   
Sbjct: 544 MNKEENTETKTKTQLKEEKRKEKEQREIERRSKNKIKKLEDDIEQTEKKIAGLDMMLCQE 603

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
              E Y    +   +  EK +++  L S  ++W QI  
Sbjct: 604 ---EIYSNPEKSKEVNLEKAELEDKLASLYEKWEQIME 638


>gi|325179963|emb|CCA14365.1| PREDICTED: WD repeat domain 65like putative [Albugo laibachii Nc14]
          Length = 1336

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 114/337 (33%), Gaps = 18/337 (5%)

Query: 197  QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256
            +   E      +N EI  E+ ++ +    F     I  + +      ++ +  + ++ + 
Sbjct: 848  KSTFELLRVDKNNSEIDFEEKIKQLDERHFEEIQEIEATYQQ-EIMKKVEQYQYVLQEKE 906

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
               +  +     ++T   +Q    ++ E + E +   R+  +    +  A D       +
Sbjct: 907  HQHQQWKQEQTGLITT--HQKYVKQVTEDLEERLNEDRLLRVHMEDENKAIDREYHESMQ 964

Query: 317  NRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLAHRREVL 372
                D D  +E          +      +     +     +   L   ++E     +++L
Sbjct: 965  QMESDVDEEIERYKKRFSEAIQAERETTLRFKGENGIMKKKFSALQKEIEEQRDQIKQML 1024

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEII---AIIRNEDKPKPVMVSRFSLTENQVD 429
             +             EI  GL       DE I        E K K   + +F    +   
Sbjct: 1025 EKEKKLNEDIKTMEREIQ-GLRREIRTRDETIGEKEKRIYELKKKNQELEKFKFVLDYKI 1083

Query: 430  AILNLRLRS----LRKLE--EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
              L L++      +  L+    ++  EL++      ++D ++   ++Q N +  EI +++
Sbjct: 1084 KELKLQIEPRENVITGLKNQIEEMDRELESFHISNTQLDGMIGEQRKQINLLQEEIVKIR 1143

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
            ++ SK  ++  +R  F              + ++  +
Sbjct: 1144 KM-SKRQEIWMQRFQFDLHQCIQHIQKPAQLNKEFEV 1179


>gi|148709850|gb|EDL41796.1| centrosomal protein 55, isoform CRA_b [Mus musculus]
          Length = 499

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 65  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 123

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 124 RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 183

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 184 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 243

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 244 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 303

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 304 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 363

Query: 499 F 499
            
Sbjct: 364 E 364


>gi|332074580|gb|EGI85054.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA17545]
          Length = 1179

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 8/173 (4%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE---EYQIKSELDNL 454
            N++  I  I++                 Q   +L  +L+  ++ E     ++  ELDNL
Sbjct: 781 QNLEAEIEEIKSNKNAIQERYQNLQEEVAQAR-LLKTKLQGQKRYEVADIERLGKELDNL 839

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E+E+I  +L        ++  E+   +   SK+     ++    +    D    Q   
Sbjct: 840 NIEQEEIQRMLQEKVDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDD 899

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567
           I          N  WIR           +  +    L+   +  T    +  +
Sbjct: 900 IASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQNQLTDQYQISYT 948


>gi|326670258|ref|XP_003199176.1| PREDICTED: hypothetical protein LOC100536078 [Danio rerio]
          Length = 1422

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 80/277 (28%), Gaps = 29/277 (10%)

Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
           R R +   E        I   E      K + +E+  E+   + +  +E       E  R
Sbjct: 544 RERQKAVREGFEIDRQMIAEIE------KEKELERQREMKRQRDLE-IEKQSKIEREKRR 596

Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370
                K +    +L  +                      +  +   +    +E    R  
Sbjct: 597 EAEIQKEKERQKELERQREQERERQRQIERQREIERQKLKQIEYERMKAAERELEQQREF 656

Query: 371 VLFRRSSFRMQAI---------------DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
              R+  F  +                  + +E  +   +      EI    + E + K 
Sbjct: 657 ERQRQKEFEREKERMLEQERLRLREFEKQKEIEKERERQLELERQREIERQKQRELE-KQ 715

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + R    E Q +      L+  R+LE+ + +        E++K        ++Q    
Sbjct: 716 REIERQKEIERQRE------LQRQRELEKQKEQEREKQRHLERQKELDRQRELERQRELE 769

Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
                E ++   K  +  R++    ++ R  +   ++
Sbjct: 770 RQLEIERQKEIEKQKEFERQKQMDLDIERWTRQKAEE 806


>gi|257053797|ref|YP_003131630.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
 gi|256692560|gb|ACV12897.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
          Length = 1188

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 11/132 (8%)

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR--SLRKLEEYQIKS-ELDNLL 455
            IDEI  +   + K          + +   +A L +  +   L +LE+ +  + E   L 
Sbjct: 180 IIDEIAGVAEFDQKKAQAFEELEVVEDRIDEADLRIEEKETRLEQLEDERETALEYQELR 239

Query: 456 AEKEKIDSL-----LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT---TFCEVSRADK 507
            EKE+ ++      L   +     +  EI E++E           R       E   A+ 
Sbjct: 240 DEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQRELDEREGKVVRLEDELAEL 299

Query: 508 ATLQQAMIEKEP 519
               +   E E 
Sbjct: 300 NAEIERKGEDEQ 311


>gi|257388095|ref|YP_003177868.1| Kinetochore-Ndc80 subunit Spc25 [Halomicrobium mukohataei DSM
           12286]
 gi|257170402|gb|ACV48161.1| Kinetochore-Ndc80 subunit Spc25 [Halomicrobium mukohataei DSM
           12286]
          Length = 647

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 58/149 (38%), Gaps = 8/149 (5%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
              R       ID +++ +  L     +++E    ++NE + K   +        + DA 
Sbjct: 135 EIERCQRERDHIDEQLDEIDSLKQRLPDLEEQKRELQNEVEAKRSELESLETEIEEADAS 194

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFSK 488
           +  +     + E  ++++ L+ L   +  ++ +   + + +++ + +  E  E++    +
Sbjct: 195 VESQ-----REERDELETALEELRDVRSTLEDVRYEIEAKRKRHSSLKEERNELETEIDE 249

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEK 517
             D+        E    D  + +Q +  +
Sbjct: 250 LADVPEDELANIEGHVDDLRSRKQQLDAE 278


>gi|168212253|ref|ZP_02637878.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170716039|gb|EDT28221.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 1067

 Score = 38.6 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 21/184 (11%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR-REVLFRRSSFRMQAIDRR 386
            +     +   F  N  +     +  +  L   LK    +   +   R    ++      
Sbjct: 308 QLEYYIPIHKLFLKNNTITYKKSLENLRSLLEELKNISKNIILDENIRVFKEKLMKTTFN 367

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           +   KG +   + ID    II      K     R   +E     I   +L   + ++  +
Sbjct: 368 LYKTKGKIYCNVKIDYCGYIIDLIRDEKDNSFLRDLKSE---KYI-EFQLERFKFIKREE 423

Query: 447 ------IKSELDNLLAE-KEKIDSL----LNSGKQQWNQ-----IACEIREVKEIFSKST 490
                  + E+  L ++  +++  L    L+   +++       I+ E++E+   +    
Sbjct: 424 DFCFIGNEEEMYELFSKGIKRLRELGEVLLSEELKEFKVLDSSLISSELKELSNFYKLKF 483

Query: 491 DLGR 494
           D G 
Sbjct: 484 DFGD 487


>gi|297459620|ref|XP_002700649.1| PREDICTED: ninein (GSK3B interacting protein) [Bos taurus]
 gi|297479598|ref|XP_002690881.1| PREDICTED: ninein (GSK3B interacting protein) [Bos taurus]
 gi|296483242|gb|DAA25357.1| ninein (GSK3B interacting protein) [Bos taurus]
          Length = 2050

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 72/232 (31%), Gaps = 24/232 (10%)

Query: 298 LEDIRDESAEDVRIVLFPKNRSLD------------PDLLMESIFMLSDMETRFPLNMNV 345
           +E ++++   ++  +       ++             +   E++ +  + E         
Sbjct: 611 IEQMKEQHHRELCHLRLELEDKVNYYEKQLDETKVAFEKEQENMKLKCENEVHILEEQIS 670

Query: 346 LSMGRVPQVMPLDGILKEWLAHRRE-VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
               ++ ++     +LKE            +   +M+  + +  + + L +      E  
Sbjct: 671 DLKNKIAELQGQTEVLKEAQHVAICRHEEEKKQLQMKWDEEKAHVQEELRL------EHE 724

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
             +R   +      +R      Q  A    ++R L +  E   + +L +L+        +
Sbjct: 725 MALRARLEQVEESFNRERERLVQNGAWTEEKVRGLTQKLEQVHQEQLKSLVE-----KHI 779

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
           L   + Q   +    RE+ E   K      RRT+  E              E
Sbjct: 780 LEKEELQKELLEKHQRELHEGREKMETECNRRTSQIEAQFQADCQKVTERYE 831


>gi|254573932|ref|XP_002494075.1| Formin, nucleates the formation of linear actin filaments [Pichia
           pastoris GS115]
 gi|238033874|emb|CAY71896.1| Formin, nucleates the formation of linear actin filaments [Pichia
           pastoris GS115]
 gi|328354105|emb|CCA40502.1| Cytokinesis protein sepA [Pichia pastoris CBS 7435]
          Length = 1800

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 29/218 (13%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
               +  + D   +   ++      K    +     + + + +  +    LN        
Sbjct: 483 KNAHLLDIFDYLRDFGNEIINDQIEKFFDYEAQDHQQLLQLDTLEDKNVDLN------DP 536

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
           V  V  +    ++    R      ++ F  Q    + +  KGL      ID +++ +   
Sbjct: 537 VSLVKVIWEKNQDSETQRYIKSMMQNLFMNQLDSEKADTGKGLNRTLKLIDRLVSNVSMA 596

Query: 411 DKPKPVMVSRFS------LTENQVD-----AILNLRLRSLRKLEEYQIKSEL-------- 451
                   +  +       +  Q D     AI+  R  + +  E    + EL        
Sbjct: 597 AAAASNDETALNITINRLFSSLQTDDVARKAIMEAREATKKAEEAIAERDELIRQMSMGS 656

Query: 452 ----DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
               D L  E  + + +L+  ++Q  QI  ++RE + +
Sbjct: 657 DGLVDQLKQELLEQEVILSKQRRQNEQIMSDLREARRL 694


>gi|159125409|gb|EDP50526.1| hypothetical protein AFUB_068630 [Aspergillus fumigatus A1163]
          Length = 978

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY-----QIKS 449
           + +  +D+ I+ I  E+      +        Q  A+L  RL  +++LEE       ++ 
Sbjct: 189 MGFREMDQYISKINKEN----FDLKLDIFHRAQQMAVLEKRLERMQQLEEDVQHMRDLEE 244

Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQI 475
           EL  L   +E    L  S +Q   +I
Sbjct: 245 ELQELRDVEEDNQRLRESNEQLRQEI 270


>gi|320547231|ref|ZP_08041524.1| SMC family domain protein [Streptococcus equinus ATCC 9812]
 gi|320448119|gb|EFW88869.1| SMC family domain protein [Streptococcus equinus ATCC 9812]
          Length = 1179

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 3/185 (1%)

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           L   +  F   +  ++  +      ++ I     +  ++V   R       +  R  + +
Sbjct: 762 LEAQKAHFEAELTTIAERKQELTSEIEQIKANKNSITQKVDNLRQQLSQAKLQERELLSE 821

Query: 392 GLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
               +       I++  N  +  K   +  F  ++NQV+ +  L+ +    +E     SE
Sbjct: 822 RKFESANKTRLEISLAENKSEIAKCEELLAFHASDNQVENLPALQKQHDEAIERKA--SE 879

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
            + L++ + ++D    + ++   Q+A E ++ +E+  K   +  + +   E  R     L
Sbjct: 880 KERLVSLRFELDDCEANLEELEEQVAKENQKNEELIRKQAQIEAQVSQVSERLRGFSTDL 939

Query: 511 QQAMI 515
            +   
Sbjct: 940 TEDYH 944


>gi|299770934|ref|YP_003732960.1| ATP-dependent chaperone ClpB [Acinetobacter sp. DR1]
 gi|298701022|gb|ADI91587.1| ATP-dependent chaperone ClpB [Acinetobacter sp. DR1]
          Length = 859

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 105/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+++L  +  +++   N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDVGSKAEVNHLEKQIAEVEKEYNDLEEIWKSE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|153802803|ref|ZP_01957389.1| DNA topoisomerase IV subunit A [Vibrio cholerae MZO-3]
 gi|124121668|gb|EAY40411.1| DNA topoisomerase IV subunit A [Vibrio cholerae MZO-3]
          Length = 45

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 724 NDLLGWLGKRGGVGSLVPKGFPRS 747
           +DL  + G+RG  G+L+P+G  R 
Sbjct: 2   SDLDNFRGERGRRGALLPRGLQRV 25


>gi|24216916|ref|NP_714397.1| siroheme synthase [Leptospira interrogans serovar Lai str. 56601]
 gi|45659187|ref|YP_003273.1| siroheme synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198303|gb|AAN51415.1|AE011575_1 siroheme synthase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602433|gb|AAS71910.1| siroheme synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 202

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 440 RKLEE---YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
             LEE    + + E   L+  ++++ S+L + +++   +   ++ +K+ +
Sbjct: 143 TTLEELIPDEHEEEFKELMLLRKELKSILPNQERRRKVLKDLLQTLKDDY 192


>gi|17550768|ref|NP_508523.1| Temporarily Assigned Gene name family member (tag-312)
           [Caenorhabditis elegans]
 gi|74966415|sp|Q22908|RASEF_CAEEL RecName: Full=Ras and EF-hand domain-containing protein homolog;
           Flags: Precursor
 gi|13775388|gb|AAK39204.1| Temporarily assigned gene name protein 312, partially confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 656

 Score = 38.6 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
              + +    +  L+   A  RE+  RR       +D+++E+ +         +E   + 
Sbjct: 166 HKELSEKKHENERLQRIYASEREMYNRRMEEMESEVDQQLELTEMKARQ----EERDRLT 221

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN----LLAEKEKIDS 463
           + +++ +  M    S   N ++ +  +     R+ E    + EL +    +  E   +  
Sbjct: 222 KEKEEMRQRMSDEMSEMRNNIERLQKMEKALERENERLNHQKELSDKLKVVNEENNDLRQ 281

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
            L     +   I  E+ +V+  F +  D    R           +      
Sbjct: 282 NLAENHLELAMIKSELAQVRCEFDQKQDELSARRGILFQLEPINSLSSSDQ 332


>gi|195495688|ref|XP_002095373.1| GE22360 [Drosophila yakuba]
 gi|194181474|gb|EDW95085.1| GE22360 [Drosophila yakuba]
          Length = 648

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 231 RRWIEKENRAARIKRKKEEMSRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 290

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +  + R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 291 AQ-----KAEADRAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKLLKKERKTLRDKVK 344

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 345 DCKYYAKN 352


>gi|221056148|ref|XP_002259212.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809283|emb|CAQ39985.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1400

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 14/186 (7%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375
           K  S   +++  S    ++ +++    +++++         ++ I+  +   R+      
Sbjct: 524 KEESEKAEVVSASDADEAEDQSKLNNMLHLINSKNKKIKGEIEMIVNSYNELRKIKTKNE 583

Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435
              RM          K  L     I+E         K K  M     L   +     NL+
Sbjct: 584 EIIRMYKERE-----KKCLHMLKEIEEKERRRSASFKKKEKMYQEEILEREK-----NLQ 633

Query: 436 LR---SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L      ++LE    + E+ +L  ++E+++ LL        ++     E +   S   D 
Sbjct: 634 LEITNREKELERMMREHEV-SLRMKEEELEVLLGKEGALKEELKKIESEAERKVSMLKDE 692

Query: 493 GRRRTT 498
             RR T
Sbjct: 693 FERRRT 698


>gi|194875326|ref|XP_001973578.1| GG13262 [Drosophila erecta]
 gi|190655361|gb|EDV52604.1| GG13262 [Drosophila erecta]
          Length = 647

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 231 RRWIEKENRAARIKRKKEEMSRIRALVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 290

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +  + R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 291 AQ-----KAEADRAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKLLKKERKTLRDKVK 344

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 345 DCKYYAKN 352


>gi|313683070|ref|YP_004060808.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155930|gb|ADR34608.1| response regulator receiver protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 349

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 88/251 (35%), Gaps = 34/251 (13%)

Query: 253 RARWCVEEVGRGSWCIVVTEIP-YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311
             +  +E+    ++ IV+T+I   ++    +I +I E+   ++I  +      SA D   
Sbjct: 45  NGQDGIEKYNHETYDIVITDINMPRLNGIEMISQIREINPEQKIIAI------SAHDEPE 98

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP--------LDGILKE 363
           +L    R      L++ I +   +   +P+  +  +     ++             I+++
Sbjct: 99  ILIDMMRRGVSTFLLKPINLEEMIRIIYPVCRDASAQNVNAELFEELNQERIKYKHIVEK 158

Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSR 420
            LAH R V  + S           +    +L  Y   DE      ++   D  + +    
Sbjct: 159 LLAHLRTVEIKNSQMGKLYAQNNPDERSQMLEEYFAKDEENENEKVVFLGDDCEEMTDLL 218

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQ----------------IKSELDNLLAEKEKIDSL 464
             + +     +++  +R ++ + +                  +   LD L     +   L
Sbjct: 219 GEIPDQLSRYVVDKDIRHIQTVRDDVGKLSNILFHYTPFLDPLAKSLDELSDVIAQEQDL 278

Query: 465 LNSGKQQWNQI 475
           L   + + +QI
Sbjct: 279 LAKLEAKPDQI 289


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 76  ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113
           A+ VG ++G  HPHGD S+Y+++VR++Q +  R   I 
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQIXIE 38


>gi|312097587|ref|XP_003149022.1| hypothetical protein LOAG_13468 [Loa loa]
 gi|307755813|gb|EFO15047.1| hypothetical protein LOAG_13468 [Loa loa]
          Length = 692

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 13/207 (6%)

Query: 316 KNRSLDPDLLMESIFMLSDMETRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
                D ++  E I  L     +  + N  +       +        +  L  +     +
Sbjct: 100 LKAESDAEVWKEQIRRLELEIEKLKIENRTITEQEEKTRDALTKETNRAHLLQKELEETK 159

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                ++   +R+E            DE        ++   + +     T    + I  +
Sbjct: 160 AEIEELEKKIKRLEQEIESSSRGTRKDE-------SEETDKISLGPSGPTVYDTE-IHEI 211

Query: 435 RLRSLR---KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           R+R +    KLE  +I  E D L      ++  +    +++ +   EI E+K    +  D
Sbjct: 212 RIREVNDKWKLEFDKILGEKDELERRIRDLEDQITQKNREFERQETEIAELKRKHQEEID 271

Query: 492 -LGRRRTTFCEVSRADKATLQQAMIEK 517
            L    +   +  + D    ++   + 
Sbjct: 272 RLRSEISQLHDKHQNDLDDEKEQYNKN 298


>gi|297280798|ref|XP_001105956.2| PREDICTED: centromere protein F-like [Macaca mulatta]
          Length = 3103

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 85/257 (33%), Gaps = 9/257 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 875  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKLATEQAEIQELKQSNHLLEDSLKEL 934

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 935  QLLSETLSLEKKEMSSIISLNKREIEELTQENATLKEINASLNQEKMNLIQKSESFANYI 994

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q + IL L+           +  +      +  K++ LLN     
Sbjct: 995  DEREKSISELSDQYKQENLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1053

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531
                  E+ ++KE F+K       +  F E    +     + + +     +  +      
Sbjct: 1054 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQDLRSEMTDTRNN--S 1111

Query: 532  SLKSHSVDLSALHFKEG 548
              ++  +    +  KE 
Sbjct: 1112 KSETDGLKQEIMTLKEE 1128


>gi|21356311|ref|NP_649284.1| CG10565 [Drosophila melanogaster]
 gi|7296390|gb|AAF51678.1| CG10565 [Drosophila melanogaster]
 gi|17862382|gb|AAL39668.1| LD23875p [Drosophila melanogaster]
 gi|220946754|gb|ACL85920.1| CG10565-PA [synthetic construct]
          Length = 646

 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 231 RRWIEKENRAARIKRKKEEMSRIRSLVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 290

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +  + R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 291 AQ-----KAEADRAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKLLKKERKTLRDKVK 344

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 345 DCKYYAKN 352


>gi|4778|emb|CAA38253.1| Uso1 protein [Saccharomyces cerevisiae]
          Length = 1790

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|71656061|ref|XP_816583.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70881722|gb|EAN94732.1| hypothetical protein Tc00.1047053506629.100 [Trypanosoma cruzi]
          Length = 457

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 13/163 (7%)

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKE+  H++ +   R   R + +  + E  + +     +I+            + +    
Sbjct: 197 LKEFTEHQKLLQAERERHRERFLVLQEETTRTVNSLTADIE------------RQLRQHL 244

Query: 421 FSLTENQVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             + E Q    + ++ L    + E     +E      E ++I + +   ++   ++  E+
Sbjct: 245 REIREVQRQHTVQVKDLERQLQEEREAHATESQKHTEELDQIQATVKKLEEDKTRLMQEL 304

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            E      +       R +  ++ R +       +  +E  T 
Sbjct: 305 GEQHSQVEEWRRRYNERDSLAKLERIEHQARFDELHVEEAQTF 347


>gi|326922133|ref|XP_003207306.1| PREDICTED: kinesin-like protein KIF15-like [Meleagris gallopavo]
          Length = 1398

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 75/204 (36%), Gaps = 15/204 (7%)

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           + + + S++++    N ++ ++    +      + +    HR  +    +  +   +  R
Sbjct: 612 KHMELESELQSLQKANQHLENILEATKAHKRREVSQLHKLHRETLKNITTPTKAYQLRSR 671

Query: 387 VEILKG-LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI---LNLRLRSL--- 439
           +       +  + + D        +D  K  +    +  E   +AI   L +    L   
Sbjct: 672 LVPRISPEISDFHSEDLECCKEMMDDIFKEPVPPEMN--EQAYEAIAEELKMAQEQLSTM 729

Query: 440 -RKLEEYQ-----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493
             KL+E +     ++  ++ L     +I  LL+S +  W++   E+ E  ++  K     
Sbjct: 730 QTKLDEEESKNIKLQQHINKLEHHSAQIQELLSSERNDWSKEREELLEQIKLLEKQFQDA 789

Query: 494 RRRTTFCEVSRADKATLQQAMIEK 517
           + +    +    D   + Q+  ++
Sbjct: 790 QSKADILKSEVHDLRIVLQSADKE 813


>gi|301779409|ref|XP_002925120.1| PREDICTED: ribosome-binding protein 1-like [Ailuropoda melanoleuca]
          Length = 1361

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDR---RVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
              +  +     +E    + +   Q +     R +  K +             +R+  + K
Sbjct: 946  KELESQVWCLEKEATELKEAVEQQKVKNNDLREKNWKAMEALASAERACEEKLRSLTQAK 1005

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + SLTE Q    L+  L +L           L  L  +  ++   L +  +  + 
Sbjct: 1006 EESERQLSLTETQTREALSALLPALSSSTPQSYTEWLQELREKGPELLKQLPARAEPSSD 1065

Query: 475  IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +A ++RE +E  +       +  T    +      LQ+++ ++E + 
Sbjct: 1066 LASKLREAEETQNNLQAECDQYRTILAETEGMLRDLQKSVEDEENVW 1112


>gi|291389006|ref|XP_002711039.1| PREDICTED: kinesin-like motor protein C20orf23 [Oryctolagus
           cuniculus]
          Length = 1336

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 41/288 (14%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL------ 357
           ES   +   +  K +S   +L      + +  +    +   +       +          
Sbjct: 630 ESKRKLIQEMEEKQKSDKAELERMQQEVETQRKETEIVQRQIRKQEESLKRRSFHIENKL 689

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK------GLLIAYLNID--EIIAIIRN 409
             +L E      E L  +    +Q   +  E           L A  N D  E + I + 
Sbjct: 690 KDLLAEKEKFEEERLREQQEIELQKKKQEEESFLRVREELQRLRALNNSDKAEKLQIFQE 749

Query: 410 EDK---PKPVMVSRFSLTENQVD----------AILNLRLRSLRKLEEYQIKSELDNLLA 456
            D+    K    ++ +L + +++          A L  +LR  +++ +     E+  +  
Sbjct: 750 LDQLQRAKDEQCAKLALEKRRLEEQEREQTLLVAHLEEQLREKQEMTQLLRWGEVQRVEE 809

Query: 457 EKEKIDSLLNSGKQQW------NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           E+  ++ +  +  +           + E+   +  F         R    E     +  L
Sbjct: 810 ERRDLEGIREALLRVREARAGGEVDSEELERAQLQFLDFKRRQLVRLANLEKDLVQQKDL 869

Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558
            +  +E+E  T+           +  + + + L  K  +S+    HA 
Sbjct: 870 LEKEVEQEQETLG--------HFRRENDEEARLLAKSDESVSNVAHAT 909


>gi|224055263|ref|XP_002298450.1| predicted protein [Populus trichocarpa]
 gi|222845708|gb|EEE83255.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 10/174 (5%)

Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284
           DFP   I     + I  +          + R  +  +GRG++ IV + +  +  +   I+
Sbjct: 10  DFP--AIPTNGGQFIQHNIFGNLFEITSKYRPPITPIGRGAYGIVCSVLNSETNEKVAIK 67

Query: 285 KIAELIIAKR--------IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336
           KIA               I LL  +  E+   +R V+ P  R    D+ + +  M +D+ 
Sbjct: 68  KIANAFDNYMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFTDVYIATELMDTDLH 127

Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
                N  +        +      LK   +        + S  +   +  ++I 
Sbjct: 128 HIVRSNQGLSEEHCQYFLYQTLRGLKYIHSANVIHRDLKPSNLLVNANCDLKIC 181


>gi|195592046|ref|XP_002085747.1| GD12143 [Drosophila simulans]
 gi|194197756|gb|EDX11332.1| GD12143 [Drosophila simulans]
          Length = 648

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           RR +     + R++     +  ++ L+    N D+ I   + E+K +     R  +   Q
Sbjct: 231 RRWIEKENRAARIKRKKEEMSRIRSLVDLAYNNDKRIQRFKQEEKDRKAAAKRAKMDAAQ 290

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
                  +  + R + E  +  E     AE+++I+ +    +QQ   +  E + +++   
Sbjct: 291 AQ-----KAEADRAIREAALAKEKAE-KAEQKRIEQIRIEREQQKKLLKKERKTLRDKVK 344

Query: 488 KSTDLGRR 495
                 + 
Sbjct: 345 DCKYYAKN 352


>gi|6320145|ref|NP_010225.1| Uso1p [Saccharomyces cerevisiae S288c]
 gi|56757595|sp|P25386|USO1_YEAST RecName: Full=Intracellular protein transport protein USO1;
            Short=Int-1
 gi|1431059|emb|CAA98621.1| USO1 [Saccharomyces cerevisiae]
 gi|285810974|tpg|DAA11798.1| TPA: Uso1p [Saccharomyces cerevisiae S288c]
          Length = 1790

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|302144144|emb|CBI23249.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL--NIDEIIAIIRNEDKPKPVMVSR 420
             L   R    ++    ++ ++      +      +   ID++   +  E K +  M   
Sbjct: 317 HELEAERHSFKKKLEHFLKKVNEDRTSWQSREQQKIRGIIDDLKDKLNIERKNRQRMEIL 376

Query: 421 F-SLTENQVDAILNL----RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
              L     DA L++    +     +     ++   + L  E  +  + + S K+++ +I
Sbjct: 377 NSKLVNELADAKLSMKEFMQEYEKERKGRELMEEVCNELAKEIGEDKAEVESFKREYVKI 436

Query: 476 ACEIREVKEIFSKSTDLGRRRTTF 499
             E+ E +++   +      R   
Sbjct: 437 REEVEEERKMLQMAEVWREERVQM 460


>gi|259145186|emb|CAY78450.1| Uso1p [Saccharomyces cerevisiae EC1118]
          Length = 1790

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|254568760|ref|XP_002491490.1| Component of CORVET tethering complex [Pichia pastoris GS115]
 gi|238031287|emb|CAY69210.1| Component of CORVET tethering complex [Pichia pastoris GS115]
 gi|328352000|emb|CCA38399.1| Vacuolar protein sorting-associated protein 18 homolog [Pichia
           pastoris CBS 7435]
          Length = 891

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 22/139 (15%)

Query: 547 EGDSLKIALHAHTTDRIL------LLSTDGKAYTLPAGNLLSGRGHGEAIQLL-IDLNHN 599
           E   L+  +   T D  +      L+  +G  YT+            E +  + + ++  
Sbjct: 6   EEVQLEFHIKGKTVDLQVNSNILDLVLENGTIYTIDL-------SRPENVSTIQLPISAG 58

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
             +V +F     C L+V +   + F V         RK K+ + +   + + L+     D
Sbjct: 59  TQVVGSFSDYKGCHLIVKTKSLDYFYV--------NRKSKSAISLKKLKNLDLIGIKFSD 110

Query: 660 HVAVVGENRKLLIFSIDQI 678
            +         L+F    +
Sbjct: 111 ELVGHSTTGPFLVFDEQNV 129


>gi|190405068|gb|EDV08335.1| intracellular protein transport protein USO1 [Saccharomyces
            cerevisiae RM11-1a]
          Length = 1790

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|163795078|ref|ZP_02189046.1| Type I secretion membrane fusion protein, HlyD [alpha
           proteobacterium BAL199]
 gi|159179476|gb|EDP64005.1| Type I secretion membrane fusion protein, HlyD [alpha
           proteobacterium BAL199]
          Length = 450

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 12/197 (6%)

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF--CEVSR 504
           +   +D    E   +++   S ++Q   I  EI  V+E++ K  +   R       E   
Sbjct: 179 LDRRIDKAREEITALNAQQRSDRRQLAIINEEIVGVRELYEKGLERKPRLLALQRTEAEL 238

Query: 505 ADKATLQQAMIEKEPITVVIS---NRGWIRSLKSH-SVDLSALHFKEGDSLKIALHAHT- 559
                 +QA+  +    V  +     G + S  +    DL A   +  D  +    A   
Sbjct: 239 EGSIDNRQALKARAGQAVSETEFQKSGLVESTTAEIETDLRAAQIELEDLRQQLTAAQDA 298

Query: 560 -TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618
            T   +     GK Y L           G+AI  L+    +++++     D      V  
Sbjct: 299 LTRTTIDAPEAGKVYGLRFHTHGGVVAPGDAILNLVP--DDEELIVKVQLDPNDIDTV-- 354

Query: 619 SKGNAFIVEESEIIANT 635
            +G A  V  +     T
Sbjct: 355 KEGAAATVRLTSFNQRT 371


>gi|71410212|ref|XP_807413.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871406|gb|EAN85562.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1028

 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 75/218 (34%), Gaps = 19/218 (8%)

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           L + R       +   +     R + + R  +  ++ + + +E  +  + +   +DE   
Sbjct: 238 LRLEREASFKADEEKAEIAQEARLQEMLRTHAAEVEKLQKELEARRAAIESQAVVDEW-- 295

Query: 406 IIRNEDKPKPVMVSRFSLTENQV--------DAILNLRLRSLRKLEEYQIKSELDNLLAE 457
                 K +  +  R+  + +Q           +L LR R  ++L     + E       
Sbjct: 296 --GPAGKEREALEKRWRTSIDQALKDEEELQRQLLELRERHGQRLSSEVARVEATVREQH 353

Query: 458 KEKIDSL----LNSGKQQWNQIACE-IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           + +   +    L S K+  ++++ E +++  E+  KS    +R     E     +    +
Sbjct: 354 QREEKQMEGESLASLKRLEDEVSAEFLKKKAELQQKSLADVQRLKEAAEKHHRAEVAAMR 413

Query: 513 AMIEKEPITVVISNRGW--IRSLKSHSVDLSALHFKEG 548
                    V  S +    IR+ +  SV    L  K  
Sbjct: 414 ENHADREKKVTESEKKIASIRAKERESVATIELKSKNE 451


>gi|320666250|gb|EFX33256.1| hypothetical protein ECOSU61_05116 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 802

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 21/315 (6%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
             D         S++ +     +        ++  + +  +    I +  I +   +S+ 
Sbjct: 464 CKDCAIDPNTNYSKDGLTAQKYMYMDLDGAISKEQIPDFLKKVSAINIDVINFYNSESKT 523

Query: 283 IEKI--AELIIAKRIPLLEDIRDESAEDVRI------VLFPKNRSLDPDLLMESIFMLSD 334
            EK   A L +   +  L        E              K+   +   ++ ++     
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEEIYHFDNSRVEFFIFKDMQENAQNIINNMIESDR 583

Query: 335 METRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKG 392
           ++    + N  +               +++ +    +      +F  + + R  E + + 
Sbjct: 584 IKFVESIINKMIPPPDGTILTENPKEYVQKQIKESHKESATNVTFDYKELARIFEGVEEK 643

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + A  N  E I   + +   +    +R     +   AI               +     
Sbjct: 644 QIKALSNQLEHIKSFKTDYDSRLNKYARDFYYFSSAFAI-----------NWEDLLKNYQ 692

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + A  +  D LL   K+        + + + +F    D         EV+  +   +  
Sbjct: 693 EIRASIKDYDDLLREIKELIISRNKSLEDKRTLFDNKRDNWNSIEVQDEVNALNAKIVDC 752

Query: 513 AMIEKEPITVVISNR 527
               +  +T+V +NR
Sbjct: 753 DDKIRSKLTIVRNNR 767


>gi|256270849|gb|EEU05990.1| Uso1p [Saccharomyces cerevisiae JAY291]
          Length = 1790

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|73974726|ref|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isoform 1 [Canis
            familiaris]
          Length = 4686

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1886 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1945

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1946 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1996

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1997 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 2050

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 2051 LVED--TLRQRRQVEEEI 2066


>gi|73974720|ref|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isoform 6 [Canis
            familiaris]
          Length = 4691

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1891 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1950

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1951 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 2001

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 2002 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 2055

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 2056 LVED--TLRQRRQVEEEI 2071


>gi|256355030|ref|NP_083036.2| centrosomal protein of 55 kDa isoform 2 [Mus musculus]
          Length = 461

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E GR      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKGRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|309364672|emb|CAP24523.2| CBR-TOE-1 protein [Caenorhabditis briggsae AF16]
          Length = 1946

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 19/251 (7%)

Query: 284 EKIAELIIAKRIP----LLEDIRDESAEDVRIVLFPKNRSLD-PDLLMESIFMLSDME-- 336
           EK+ E+++AK IP     ++           +V+     ++   + ++ S+  L   +  
Sbjct: 234 EKVDEMMLAKLIPFIEHGIKSPMKSFRYSAMVVISQLVLTVKLKEDVLNSLCKLLITKMR 293

Query: 337 ---TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR---VEIL 390
              +   LN  ++   +          LK+ L H  ++   ++   +           IL
Sbjct: 294 SDTSTASLNTLMVVFQQQNVENLSKNTLKKLLRHDEDIDMWKALRDLSERTDTSKFYNIL 353

Query: 391 KGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450
              L+A     E        D           LT  Q  A L L L      EE    + 
Sbjct: 354 WKELVALSRDSESDEQQLAIDVLLETSDDASLLTSEQAKAFLKLIL------EEAMSGNL 407

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           +D     K  I ++     +Q+++I  E++E  +   K            +++       
Sbjct: 408 IDKKNKMKGNIRAIGIRFAKQFDEIYEELKEKDKKALKRIVKEIELEDVVQMASEYIEVA 467

Query: 511 QQAMIEKEPIT 521
            +A  E     
Sbjct: 468 PEAASEDVEEV 478


>gi|296213052|ref|XP_002753110.1| PREDICTED: serine/threonine-protein kinase TAO3 isoform 1
           [Callithrix jacchus]
 gi|296213054|ref|XP_002753111.1| PREDICTED: serine/threonine-protein kinase TAO3 isoform 2
           [Callithrix jacchus]
          Length = 898

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 85/259 (32%), Gaps = 16/259 (6%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           +  + E++      L+    DES  +    + PK   +             +      + 
Sbjct: 364 VNSMQEVMDESSSELVVMHDDESTINSSSSVVPKKDHVFIRDEAGHGDPRPEPRPTQSVQ 423

Query: 343 MNVLSMGRVPQVMPLDG---ILKEWLAHRREVLFRR----SSFRMQAIDRRVEILKGLLI 395
              L      +   +     + ++   H +E   R          +   +++  L+  L 
Sbjct: 424 SQALHYRNRERFATIKSASLVTRQIHEHEQENELREQMSGYKRMRRQHQKQLIALENKLK 483

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
           A ++   +      E       +    L + QV AI+  +   +   +E + + ++  L 
Sbjct: 484 AEMDEHRLKLQKEVETHANNSSIELEKLAKKQV-AIIE-KEAKVAAADEKKFQQQI--LA 539

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            +K+ + + L S K+Q+     +I+E         D    +    E     K  LQ    
Sbjct: 540 QQKKDLTTFLESQKKQYKICKEKIKEEMN-----EDHSTPKKEKQERISKHKENLQHTQA 594

Query: 516 EKEPITVVISNRGWIRSLK 534
           E+E   +      + ++ +
Sbjct: 595 EEEAHLLTQQRLYYDKNCR 613


>gi|123509348|ref|XP_001329839.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121912888|gb|EAY17704.1| hypothetical protein TVAG_170170 [Trichomonas vaginalis G3]
          Length = 1122

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620
           D +++++ DGK   L   N          I L  D   N   +T F         + ++ 
Sbjct: 383 DDLMVITEDGK---LSVYN-----TETVPISLKSDYEFNATYLTQFTSKGDPFYAISTTT 434

Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667
           G   I    ++  + R     +++S   +    V+  G H+  + E+
Sbjct: 435 GEILICNYEDLKISNR-----IQISPTPEPIKCVEFDGQHLIAITES 476


>gi|109075207|ref|XP_001110512.1| PREDICTED: centromere-associated protein E-like isoform 1 [Macaca
            mulatta]
          Length = 2701

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 10/228 (4%)

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
              EE+ R    + +     Q     +I K+ E    +   L     +E+ E +  +   K
Sbjct: 1591 EKEEMKRVQEALQIERDQLQENTKEIIAKMQESQEKEYQFLKMTAVNETQEKMCEIEHLK 1650

Query: 317  NRSLDPDLLMESIFMLSDMETRF---PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             +     L +E+    +   T+     L            +  ++  LK      +E L 
Sbjct: 1651 EQFETQKLNLENTETENIRLTQILHENLEEMRSVTKERDDLRNVEETLKVERDQLKENLR 1710

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
               +  ++  +    +   L      IDE+  I+      K   +S         +A   
Sbjct: 1711 ETITRDLEKQEELKIVHMYLKEHQETIDELRGIVSE----KTNEISNMQKDLENSNA--A 1764

Query: 434  LRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            L+ + L+K EE +I    L       +K+  +++    + + +  ++ 
Sbjct: 1765 LKAQDLKKQEELRIAHMHLKEHQETIDKLRGIVSEKTDKISNMQKDLE 1812


>gi|66815929|ref|XP_641981.1| centrosomal protein 148 kDa [Dictyostelium discoideum AX4]
 gi|60470025|gb|EAL68006.1| centrosomal protein 148 kDa [Dictyostelium discoideum AX4]
          Length = 1297

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 30/245 (12%)

Query: 257 CVEEVGRGSWCIVVTEIPYQV--------QKSRLIEKIAELIIAKRIPLLEDIRDESAED 308
            VE+             PYQ          K+ L+E+I+ LI       LE  ++ESA  
Sbjct: 539 EVEKDDENKIKKFTINKPYQYEFKSNGTSSKNNLLEQISNLIDD-----LEKEKNESA-- 591

Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
                  K    + + LM+ +     ++ R     ++ S+ ++   +    I KE    +
Sbjct: 592 -----TIKQERNEFERLMKELEKTLALKER-----DITSIKQLNLQIEQQLIEKEKSTIQ 641

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                ++    +      +E LK L +   +I        NE   K  ++ +      Q+
Sbjct: 642 LLNQLKQYQNELIEKAVDLETLKELEVEIYSIKNQYNEKINELSEKNQLLHQNEKEIQQL 701

Query: 429 DA-ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS----LLNSGKQQWNQIACEIREVK 483
           +  I  +RL    + +  Q+  E+  L      ++     LL +   ++  +  +    K
Sbjct: 702 NNNIQRMRLELTNQEKAEQLLLEIGKLKKYITDLEHSSKTLLENEFLKYQSLKQQSDSEK 761

Query: 484 EIFSK 488
           +  + 
Sbjct: 762 QRSND 766


>gi|327280528|ref|XP_003225004.1| PREDICTED: lysine-specific histone demethylase 1A-like [Anolis
           carolinensis]
          Length = 896

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 23/206 (11%)

Query: 267 CIVVTEI---PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            +VVT +   P  V   ++  ++A++     +       D        V  PK +    +
Sbjct: 371 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQADN-------VQVPKEKDEMVE 423

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
                +   +       L+ N+L+   V     L+ +++    H ++          + I
Sbjct: 424 QEFNRLLEATSY-LSHQLDFNILNNKPVSLGQALEVVIQLQEKHVKDEQIEHW----KKI 478

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
            +  E LK LL   +N+ E I  +  + K    +     +T    + ++  + R L  L 
Sbjct: 479 VKTQEELKDLLNKMVNLKEKIKELHQQYKEASEVKPPRDIT---AEFLVKSKHRDLTAL- 534

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGK 469
                 E D L   + K++  L   +
Sbjct: 535 ----CKEYDELAETQAKLEEKLQELE 556


>gi|317497212|ref|ZP_07955536.1| poly A polymerase head domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895457|gb|EFV17615.1| poly A polymerase head domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 448

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 61/381 (16%), Positives = 129/381 (33%), Gaps = 45/381 (11%)

Query: 181 SGIAVGMATSIPSHNVQEIC----EAALALIDNPEISI--EKLLEYIIGPDFPTGGIIVE 234
           +GI  G  T + +H   E+     +        P      + L E ++  DF    +   
Sbjct: 63  TGIEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPNEVHFTKSLREDLLRRDFTINAMAYN 122

Query: 235 SRESIVESY--RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ-KSRLIEKIAELII 291
             E I++ Y          +R     ++        ++  + +Q Q   ++ EK  E I 
Sbjct: 123 DSEGIIDMYDGMTDLKNQTIRCVGEAKKRFDEDALRILRALRFQAQLGFQIEEKTEEAIK 182

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--------------IFMLSDMET 337
            +     + ++D SAE +++ L     S  P++L+ +              I M +    
Sbjct: 183 NQA----KFLKDISAERIQVELEKLITSAHPEVLVNAYKLGVTKIIFPEFDIMMETPQNN 238

Query: 338 -RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS------FRMQAI---DRRV 387
                N+ + ++  + Q+          L H       R        F+M  +   +   
Sbjct: 239 PHHKYNVGIHTVEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMAR 298

Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447
           +IL+ L      I ++  ++R  D+    +      T      +  L      +L E Q 
Sbjct: 299 KILRRLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVR--RWVSQLTPELFTRLMEVQK 356

Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACE-----IREVKEIFSKSTDLGRRR-TTFCE 501
                    +++K + +L   K+ + +I  E     I+E+K       D+G  +     +
Sbjct: 357 ADISAQSDYQRDKKEQVLQETKKLFEEIIEEKNCLSIKELKINGKDLMDMGVPQGKEIGQ 416

Query: 502 VSRADKATLQQAMIEKEPITV 522
           +       + +     E  T+
Sbjct: 417 ILSWLLDQVLEDPQLNERETL 437


>gi|281352682|gb|EFB28266.1| hypothetical protein PANDA_014557 [Ailuropoda melanoleuca]
          Length = 1349

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDR---RVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
              +  +     +E    + +   Q +     R +  K +             +R+  + K
Sbjct: 946  KELESQVWCLEKEATELKEAVEQQKVKNNDLREKNWKAMEALASAERACEEKLRSLTQAK 1005

Query: 415  PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474
                 + SLTE Q    L+  L +L           L  L  +  ++   L +  +  + 
Sbjct: 1006 EESERQLSLTETQTREALSALLPALSSSTPQSYTEWLQELREKGPELLKQLPARAEPSSD 1065

Query: 475  IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            +A ++RE +E  +       +  T    +      LQ+++ ++E + 
Sbjct: 1066 LASKLREAEETQNNLQAECDQYRTILAETEGMLRDLQKSVEDEENVW 1112


>gi|309362042|emb|CAP28691.2| hypothetical protein CBG_09100 [Caenorhabditis briggsae AF16]
          Length = 1182

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 97/271 (35%), Gaps = 31/271 (11%)

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+     R   R   EE  R    I   EI  ++ + R +E++ ++   ++   +     
Sbjct: 567 RMAMERERELERIQQEERKREMERIRQEEIAMEISRMRELERL-QMERQQKNERVRQEL- 624

Query: 304 ESAEDVRIVLFPKNRSLDPDL-LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+A   +I+   + R +   +  ME I    +      +        R  + +  + + +
Sbjct: 625 EAARKQKILEEERQRKIKEQMREMEKIRKEQEEAREIEMRRLEEERAREMERVREEEMER 684

Query: 363 EWLAHRREVL---FRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +    R        +R    M+  +R+   +E  +   +    ++E    I  E++ + +
Sbjct: 685 QQQIERLRQQEEERKRKKLEMEKEERKKALIEEERKRKVLEKELEERRQAILEEERKRKI 744

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +       E Q  AI   + R  +  EE + + E++                     QI 
Sbjct: 745 LEKEME--ERQT-AIYEEQQRR-KAEEERRKQKEMEE------------------RKQIQ 782

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            ++R+V E  S+   + R R    ++   + 
Sbjct: 783 EQMRKVSEERSRLEAMERERELMRQIIENEN 813


>gi|168485010|ref|ZP_02709948.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041873|gb|EDT49919.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|332201710|gb|EGJ15780.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA47368]
          Length = 1179

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---TTITSEKNNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVTDIERLGKELDNLDIEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N + 
Sbjct: 937 SQLTDQYQISYTEALEKAHELDNLNLAEQEVQDLEKAIRSLGPVNLDA 984


>gi|148709851|gb|EDL41797.1| centrosomal protein 55, isoform CRA_c [Mus musculus]
          Length = 474

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 39  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 97

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 98  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 157

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 158 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 217

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 218 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 277

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 278 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 337

Query: 499 F 499
            
Sbjct: 338 E 338


>gi|256355032|ref|NP_001157834.1| centrosomal protein of 55 kDa isoform 1 [Mus musculus]
 gi|256355034|ref|NP_082569.1| centrosomal protein of 55 kDa isoform 1 [Mus musculus]
 gi|109940322|sp|Q8BT07|CEP55_MOUSE RecName: Full=Centrosomal protein of 55 kDa; Short=Cep55
 gi|12835981|dbj|BAB23446.1| unnamed protein product [Mus musculus]
          Length = 462

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E GR      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKGRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|118360156|ref|XP_001013315.1| hypothetical protein TTHERM_00449150 [Tetrahymena thermophila]
 gi|89295082|gb|EAR93070.1| hypothetical protein TTHERM_00449150 [Tetrahymena thermophila
           SB210]
          Length = 1318

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 17/256 (6%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              I+     +Q +   LIEK+ E      I  +    +ES            + L+ + 
Sbjct: 220 RQRIMENSAVFQNKFQELIEKLMETKNQSLILGVTRQLNESHR----------KDLEKNN 269

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQV-MPLDGILKEWLAHRREVLFRRSSFRM--Q 381
           L E +  L++ +     ++   +   +  + + L GI +           RR+   +  +
Sbjct: 270 LTEILKRLNESQNYIEDDLIENNDQYLNNINLSLSGIHQLSKKQGSPEQTRRNKCDLEGE 329

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR- 440
               R+E+ K   I  L  D  + +   E   + ++       +N       +   +L  
Sbjct: 330 IAKLRLELEKKQEIEQLARDLKLKLFNQERNNENLLNQYNKAVDNYQKYFAEINQENLEL 389

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           K +   I+ E        +++     S + +  Q   ++++     +   DL        
Sbjct: 390 KKKIVAIEKESQQKDKIIQELKD---SFEDKLKQEKSKLQKEIMQQNLKKDLQEELLKES 446

Query: 501 EVSRADKATLQQAMIE 516
           E+    +  + Q + +
Sbjct: 447 ELKELTQDQMSQKIHD 462


>gi|118349670|ref|XP_001008116.1| hypothetical protein TTHERM_00006350 [Tetrahymena thermophila]
 gi|89289883|gb|EAR87871.1| hypothetical protein TTHERM_00006350 [Tetrahymena thermophila SB210]
          Length = 1893

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 87/274 (31%), Gaps = 14/274 (5%)

Query: 258  VEEVGRGSWCIVVTEIPYQVQKS-RLIEKIAELIIA--KRIPLLEDIRDESAEDVRIVLF 314
            +E   +    I+  E  +Q+     L +K+   + A  ++     D+ +E  +  +++  
Sbjct: 1178 IELQSKQLKEIMEKEYKHQLDVQISLAKKLETELEASKQKYQSQVDLFNEQVKKCQVLEV 1237

Query: 315  PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374
              N + +    +E  +     E     N     +      +      +    H+ +    
Sbjct: 1238 QLNENKEKQQQLELQWNNQKKEIEEQNNQVQFELKNKLSELEKTIASQTHEEHQLKNDLE 1297

Query: 375  RSSFRMQAIDRRVEILKGLLIAYLNID-----EIIAIIRNEDKPKPVMVSRFSLTENQVD 429
            +   ++  I  ++   +  L  +   +     +I  I    +  K  +  +    E Q  
Sbjct: 1298 KYQNQLAQIAGQLNQKETQLNLFKKENSALSSKIQQIDEENNTEKQELTQKIEKLEAQQA 1357

Query: 430  AILNLRLRSLRKLEEYQIKSEL------DNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +     + +++ E  + + E       + +   K+  ++LL S K     +  E     
Sbjct: 1358 ELQQKYDKQVKQYERVKKEKEENDLLADEEIHKLKQNYEALLESEKAAKEDVKKEFITKV 1417

Query: 484  EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +           +T   E     +    +  +E 
Sbjct: 1418 DELKIQVARHDTKTRQTEDKHQKQVKTLEKEVES 1451


>gi|148709853|gb|EDL41799.1| centrosomal protein 55, isoform CRA_e [Mus musculus]
          Length = 474

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|109075209|ref|XP_001110550.1| PREDICTED: centromere-associated protein E-like isoform 2 [Macaca
            mulatta]
          Length = 2665

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 10/228 (4%)

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
              EE+ R    + +     Q     +I K+ E    +   L     +E+ E +  +   K
Sbjct: 1591 EKEEMKRVQEALQIERDQLQENTKEIIAKMQESQEKEYQFLKMTAVNETQEKMCEIEHLK 1650

Query: 317  NRSLDPDLLMESIFMLSDMETRF---PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             +     L +E+    +   T+     L            +  ++  LK      +E L 
Sbjct: 1651 EQFETQKLNLENTETENIRLTQILHENLEEMRSVTKERDDLRNVEETLKVERDQLKENLR 1710

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
               +  ++  +    +   L      IDE+  I+      K   +S         +A   
Sbjct: 1711 ETITRDLEKQEELKIVHMYLKEHQETIDELRGIVSE----KTNEISNMQKDLENSNA--A 1764

Query: 434  LRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480
            L+ + L+K EE +I    L       +K+  +++    + + +  ++ 
Sbjct: 1765 LKAQDLKKQEELRIAHMHLKEHQETIDKLRGIVSEKTDKISNMQKDLE 1812


>gi|118356201|ref|XP_001011359.1| hypothetical protein TTHERM_00431340 [Tetrahymena thermophila]
 gi|89293126|gb|EAR91114.1| hypothetical protein TTHERM_00431340 [Tetrahymena thermophila SB210]
          Length = 1759

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 16/237 (6%)

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
             +E+       I V       Q  +  E+I+ L    ++      +  +    +I +F  
Sbjct: 1001 QIEQEKESCEQINVQNEDLIKQGEKHQEQISNLEEQLKLL----QKKNAQYQQQIQVFEA 1056

Query: 317  NRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
            + + + + L   +  +    D                  ++   +  +K+       +  
Sbjct: 1057 SSNEENNELCSKLNQLQQNLDDVNEQAQLQQGQIQNAQEEIEEKNQQIKQLEEFNSNMKI 1116

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ--VDAI 431
            +   + M      + I   L      +D++  ++  E + + +     SLT+ Q  +   
Sbjct: 1117 KHDEYEMTISSLNITIQTHLENQ-RKLDQL--LLEKEKEIQTIQEENISLTKEQQLIQQS 1173

Query: 432  LNLRL---RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
            L  +L   +   KL   + +  +D L +E E +   LN+ ++Q      ++ E K+ 
Sbjct: 1174 LEEKLMAQKEQEKLAIQEKQQTIDELQSENESLQHQLNNLEEQIRN-NQQLIEQKDQ 1229


>gi|156839520|ref|XP_001643450.1| hypothetical protein Kpol_483p11 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114061|gb|EDO15592.1| hypothetical protein Kpol_483p11 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 2546

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 47/104 (45%)

Query: 414  KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            + +     +L++ + D    ++   L+  E   +  EL     E +KI+ +L+S +    
Sbjct: 1818 EEIKELESTLSKYKADLEATMKNSDLKNDEFENVCKELSVKENEIKKIEEILSSKEDLIA 1877

Query: 474  QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +I  +   +K+  ++ + L  ++ +  E  + D    ++ + +K
Sbjct: 1878 EIESQKDNLKDELNEKSLLLDKKESQLEAFQEDVEVQKENLQKK 1921


>gi|302830015|ref|XP_002946574.1| structural maintenance of chromosomes protein 5 [Volvox carteri f.
           nagariensis]
 gi|300268320|gb|EFJ52501.1| structural maintenance of chromosomes protein 5 [Volvox carteri f.
           nagariensis]
          Length = 1048

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 23/144 (15%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS----RFSLT 424
                RR   R Q  ++ +E  +  L     +D +IA  R  D+ K   V     R +L 
Sbjct: 193 EHDRQRRDYERFQKREKLMEEARSFLSKAKWLD-VIAKSRTADEAKKRWVEKRDARRALE 251

Query: 425 ENQVDAILNLRLR---------------SLRKLEEYQIKSELDNLLA---EKEKIDSLLN 466
             Q + I  +R R                L K  +  ++   D L     E   +   L+
Sbjct: 252 GKQEEQIRPIRDREEALKDIRQKKTSAERLAKEADAHMRRLADKLNKQDSEIASLADELS 311

Query: 467 SGKQQWNQIACEIREVKEIFSKST 490
           S  QQ  + A +I   +    ++ 
Sbjct: 312 SLDQQTKERADQITAARMRLERAQ 335


>gi|29349697|ref|NP_813200.1| putative hemolysin secretion protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341607|gb|AAO79394.1| putative hemolysin secretion protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 416

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 30/257 (11%)

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I  PD  TG I + ++   V       G   + +    EEV +G + I V + P   + 
Sbjct: 26  IIKYPDMVTGQIKINAQNPTVRLVANSTGNLLLLSHKAQEEVKKGEY-IAVVQNPASTED 84

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            R   KIA+LI                           +   PD +   +  ++     F
Sbjct: 85  VR---KIADLINRIDFDG--------------THLLALKDTFPDKV--YLGEINPQYYAF 125

Query: 340 PLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              +       +          +   +  +++++ R +    +A   R+++ +  L  Y+
Sbjct: 126 LAALKAQCDYLQQNVYEKQRENITTSIEWKKKIV-REAEDSQKAAKDRMDVARKWLKRYV 184

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQ----VDAILNLRL----RSLRKLEEYQIKSE 450
           ++D+        +  +       ++ E Q      A   +++      L +LE  Q++ E
Sbjct: 185 SLDQQEIATYEYETDQIKNNYLTTVQEVQNINREIASTRMQITEAYHRLEQLEVEQLEKE 244

Query: 451 LDNLLAEKEKIDSLLNS 467
            +  +       +L+ +
Sbjct: 245 RELKVELLSTHQNLIAN 261


>gi|145496461|ref|XP_001434221.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401345|emb|CAK66824.1| unnamed protein product [Paramecium tetraurelia]
          Length = 539

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 12/238 (5%)

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
             L ++I  L+        +    +  +     +  K      + L  S+   +      
Sbjct: 269 QSLRQQIEILVDENEKLNKQLNELKVTKRSNEFVEIKRLQQVIEELEVSLSRKTREIDEL 328

Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             N              L  + +E   +      ++         +  ++L   L    +
Sbjct: 329 MANSKGSLSLIQNLREKLKDVEEENHRYNNIFFPKQKDIE----QQTGKLLDEFLQIKKD 384

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           ID   ++ + E + +   +     +E+QV  ++++  RS +K        EL  ++ +KE
Sbjct: 385 IDTYSSLFKMESQIREKALKSKEQSEDQVQKLVDMLGRSKQK------NKELQEVIKQKE 438

Query: 460 K-IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
             I+ +L + +Q   +I   + +   I        + R    +          Q M E
Sbjct: 439 SIINKVLEAKRQNMEEI-QILNKEIIIHKDQVQYEQNRVKEVQQQLDILEKKYQDMFE 495


>gi|268535494|ref|XP_002632880.1| Hypothetical protein CBG15088 [Caenorhabditis briggsae]
          Length = 1131

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 84/289 (29%), Gaps = 27/289 (9%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
             I  H V E+ +      +N  I   +   Y I P            E I  +Y+  +G
Sbjct: 48  EFIQQHQVLEVPQEVNNNNNNSNIDHFEPSLYQIFP----------FEEGIFSNYKEFKG 97

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIP-YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
             R                +   E   +   +  + +KI   +  K   ++ DI DE+ +
Sbjct: 98  VIRETKYENQNNEINLEEYLDKMEKRGFDYYQKIIKKKIDAFLKKKENSVINDIFDENIK 157

Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE---W 364
               + F K +    D++          E     +          ++M    IL+     
Sbjct: 158 ISLRLKFEKKKD---DVIQSFFVHTKTKELCIGEDRQDFYTSACEELMNKIEILECKGSA 214

Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLL-IAYLNIDEIIAI--------IRNEDKPKP 415
             H       R +   +  +  +            NID+   +          ++D+ + 
Sbjct: 215 HLHPAPYSAERVTH-YRKYENELNFSGFEFPFKICNIDKFEKLNNLAINVVSCSKDEKRL 273

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
           +            + ++NL          Y +   ++ L  E  +   +
Sbjct: 274 IRFRPSRRFGISDNRVINLFWYEKNDNCHYSLIKSINKLFNEYGEHQKI 322


>gi|241766421|ref|ZP_04764297.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
 gi|241363400|gb|EER58901.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN]
          Length = 868

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFS--LTENQVDAILNLRLRSLRKLEEYQI-KSEL 451
            A   IDE  + I+ E   KP ++ R    L + Q++     R +     + + + + E+
Sbjct: 387 KAIDLIDEAASKIKIEIDSKPEVMDRLDRRLIQLQIEREAVRREKDEASQKRFGLIEEEI 446

Query: 452 DNLLAEKEKIDSLLNSGK----------QQWNQIACEIREVKEI 485
            +L  E   +D +  S K          +Q  Q+  +I E+K  
Sbjct: 447 ASLQKEIADLDEIWQSEKAQAQGSQQVREQVEQVKQQIEELKRK 490


>gi|73974718|ref|XP_857213.1| PREDICTED: similar to plectin 1 isoform 1 isoform 5 [Canis
            familiaris]
          Length = 4549

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1749 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1808

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1809 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1859

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1860 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 1913

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 1914 LVED--TLRQRRQVEEEI 1929


>gi|17536671|ref|NP_496914.1| hypothetical protein W02B8.2 [Caenorhabditis elegans]
 gi|3880401|emb|CAB03458.1| C. elegans protein W02B8.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1256

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 72/230 (31%), Gaps = 20/230 (8%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             K    +   +++  E+   +    +R      L + +   +         +   +M  
Sbjct: 122 KQKMQDTISGYQEDLKENEIRIENLNSR---LHKLEDELSAKTHEIFSIGEELKNKTMKL 178

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQ---AIDRRVEILKGLLIAYLNIDEIIAII 407
             +       L E  +  R +  +   FR +      R +E+ +        + E+  + 
Sbjct: 179 NEKNSQFQTKLAEISSENRNLERKVQKFREELIVKDQRSLEVHQDQENTQKVLKEVKQLS 238

Query: 408 RNED--KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
              D   PK   VSR    ++              +     I+  +  L  +  +++  L
Sbjct: 239 DRLDYLTPKRKDVSRIKERDD------------FLQFSAKIIEETMSELKLKNARLEREL 286

Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
           +  ++       E++E+++  +++     + T +           +  + 
Sbjct: 287 SEKEELVKVTKEELQELQKTVTQAMGDSEQATKYLHAENMKLTRQKADIR 336


>gi|73974724|ref|XP_857335.1| PREDICTED: similar to plectin 1 isoform 1 isoform 8 [Canis
            familiaris]
          Length = 4544

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1744 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1803

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1804 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1854

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1855 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 1908

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 1909 LVED--TLRQRRQVEEEI 1924


>gi|70943029|ref|XP_741610.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520098|emb|CAH78452.1| hypothetical protein PC001075.02.0 [Plasmodium chabaudi chabaudi]
          Length = 707

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 67/209 (32%), Gaps = 14/209 (6%)

Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
           +   K +  D +   + I   +          N ++       +    I +E  A     
Sbjct: 501 ICQLKKKDEDAEDNNDPISEETQQTNIDKDKENEMNNLLYVINIKNKKIKEELEAFTNSF 560

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
              +        D  + I K     +      ++ I   ++ +    + F   E Q   +
Sbjct: 561 NILKKLKM--KNDEIINIYKNRESVF------LSTINKLEEKRKQKYAEFKEKEKQYKEL 612

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ-IACEIREVKEIFSKST 490
           + ++   L K+E+   K+ L++   +    + +L    Q+       +I ++KE + K+ 
Sbjct: 613 I-MKKEELLKIEQMNNKTNLESFKNQ----EQILKGEIQKIELKTKKQIEQLKENYEKAQ 667

Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEP 519
                     + S  +     Q    +E 
Sbjct: 668 KTNMENMEIEKESFINNNIEHQINKMREE 696


>gi|255575271|ref|XP_002528539.1| calmodulin binding protein, putative [Ricinus communis]
 gi|223532041|gb|EEF33851.1| calmodulin binding protein, putative [Ricinus communis]
          Length = 1261

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 17/245 (6%)

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373
             K R+ +  +  E++  L+D +      +  L   +V ++      L++     R  L 
Sbjct: 734 ELKLRNEELHVAKENMKRLTDEKVSLEQKIIRLEKKKVEEM----EFLQKNSEQERNTLK 789

Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430
            +     + ++     L          D  +A ++N  K       M         Q  A
Sbjct: 790 LQVIELEKKLEGVTRDLASAKSTLAIRDADLATLQNNLKELEELREMKEDIDRKNEQTAA 849

Query: 431 ILNLRLRSLRKLEEYQIKSEL--DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           IL ++   L +LE    + ++         E +   +    +       EI E +    +
Sbjct: 850 ILKMQAAQLAELEVLYKEEQVLRKRYFNTIEDMKGKIRVFCRLRPLSEKEIAEKERNIIR 909

Query: 489 STDL--------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540
           STD           +          D +  Q+ + E     V  +  G+   + ++    
Sbjct: 910 STDEFTVEHPWKDDKSKQHVYDHVFDGSATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTG 969

Query: 541 SALHF 545
           S   F
Sbjct: 970 SGKTF 974


>gi|56460549|ref|YP_155830.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179559|gb|AAV82281.1| Signaling protein with a ligand-binding sensor domain and GGDEF
           domain [Idiomarina loihiensis L2TR]
          Length = 970

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 545 FKEGDSLKIALHAHTTDRILLLST----DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600
           +K  + +      H  D + +  +    DG  +      L   +        +  +  + 
Sbjct: 161 YKNNERIAQFTTEHGLDSMFIFDSFVDSDGNLWAATNKGLQVKKAGKSKFIDITTIPEDV 220

Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660
            I+T F  +    LLV + KG    V ++E            K   + ++  + +   D 
Sbjct: 221 -IITLFELNDNR-LLVGTEKGLYKQVNDTEFEPF--------KPEIDSRISTIFQTADDQ 270

Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720
           + +      LL  +   I  +S  +G       +  + D+I  +  EG  W+ + G    
Sbjct: 271 IWLGTYQDGLLRINQSGIERLSTKQG-----LPNNHVLDII--QDKEGSFWVATHGGLVQ 323

Query: 721 RSENDLLGWLGKRG 734
             ++    +  K G
Sbjct: 324 FRDSLFASYTTKNG 337


>gi|21595232|gb|AAH31396.1| Centrosomal protein 55 [Mus musculus]
          Length = 461

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|308465166|ref|XP_003094844.1| hypothetical protein CRE_01319 [Caenorhabditis remanei]
 gi|308246408|gb|EFO90360.1| hypothetical protein CRE_01319 [Caenorhabditis remanei]
          Length = 479

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI---ACEIREVKEIFSKSTDLGRRR 496
            KLEE ++K E + L  +K++++++L S ++   Q+     E  E+ +  ++        
Sbjct: 213 SKLEEAELKKENERLKEQKKELEAMLQSKRKLEKQLENAKKENEELSKNHAQQAAELTES 272

Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVI-SNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554
                   A+   L +   + +   V I S    I+ LKS   +L+ +   + D +++ 
Sbjct: 273 KNLIAEKNAEIQNLIKNSAKNDQAEVKIASKAAEIQQLKSWITNLTTMSHVQSDPVRLL 331


>gi|149638854|ref|XP_001506989.1| PREDICTED: similar to myosin VI isoform 1 [Ornithorhynchus
           anatinus]
          Length = 1284

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             ++    +  V F   +  + D +M+S         +   +  + S  +  Q   L  I
Sbjct: 745 NENDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAKLVKRVNHWLICSRWKKVQWCSLSVI 804

Query: 361 -LKEWLAHRREVLFR-----RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            LK  + +R     +     R     +    R++ L  +     ++D++  ++      K
Sbjct: 805 KLKNKIKYRANACIKVQKTVRMWLCKRKHRPRIDGLVKVRTLKHHLDKLNEVVSALKDGK 864

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           P M  +    E  +DA+  +    +  +   QI+SE D L+   E++ S L   KQQ  
Sbjct: 865 PEMSQQVKDLEISIDAL--MAKIKVTVMTREQIQSEYDALVKSSEQLLSSLQKKKQQEE 921


>gi|291398190|ref|XP_002715785.1| PREDICTED: synaptonemal complex protein 1-like [Oryctolagus
           cuniculus]
          Length = 975

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK-LEEYQIKSELDNLLAEKEK 460
           E+   I N  +       R    E+Q+  I+N+ L+   + LEE  +      +  E E+
Sbjct: 380 ELKTTICNLKELLNTEQQRLEKNEDQLK-IVNMELQKKSRDLEEMNMLKNNKEI--EIEE 436

Query: 461 IDSLLN------SGKQQWNQIACEIR 480
           +  +L         K+Q+ +IA E++
Sbjct: 437 LKKILAENQKLLDEKKQFEKIAEELK 462


>gi|168185673|ref|ZP_02620308.1| ATPase involved in DNA repair [Clostridium botulinum C str. Eklund]
 gi|169296473|gb|EDS78606.1| ATPase involved in DNA repair [Clostridium botulinum C str. Eklund]
          Length = 1176

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 89/282 (31%), Gaps = 9/282 (3%)

Query: 228 TGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIA 287
              I ++     VE+        R + +  +E +      + VTE  Y   +    E+I 
Sbjct: 283 QNAIKIKPFIDEVEATNKNIKENREKLKLAIESLKDIDEKVKVTEEDYITSQKEKDERIP 342

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           ELI  +    L        E + I +                 +    +        V+ 
Sbjct: 343 ELIKKESDFSLAIDTTNKTEKLEIEIESLRDEYKAIKSKRDKILKQLKDIDVSKEKAVIE 402

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
           +  + + +    I  E+   + +   ++ +   +A+  + E+   L      + E+    
Sbjct: 403 IKNIEKRLNDIKIDPEYRE-KLQYALQKENDYKKALTNKKELHNKLQEKEGILKEVSQKY 461

Query: 408 RNEDKPKPVMVSRFSLTENQVDAILN-------LRLRSLRKLE-EYQIKSELDNLLAEKE 459
            +    K    +     E +   +         L L   ++L    +   E+ + +  K+
Sbjct: 462 NDILSSKNTQDNLVKELEEKNRILKENNPGDNSLLLEKSQELNVIAKKVEEVIDEINRKD 521

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
           +++ ++       N I  ++ E+K          ++     E
Sbjct: 522 ELEKIIEDINNTKNSINTKLEEIKNTLENDKAELKQLENKIE 563


>gi|73974712|ref|XP_848799.1| PREDICTED: similar to plectin 1 isoform 1 isoform 2 [Canis
            familiaris]
          Length = 4570

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1770 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1829

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1830 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1880

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1881 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 1934

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 1935 LVED--TLRQRRQVEEEI 1950


>gi|67466223|ref|XP_649259.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56465658|gb|EAL43878.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 554

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 21/250 (8%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K R+  KI EL              +S    R+      +       ++ +    +   +
Sbjct: 144 KERMNNKIGELNKNIESLNTTINEKDSVIK-RLNGIVSEKETLIGTNIKGLEKSEEELNK 202

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
                 V+      +    + +L   L   RE++      +++  +   +I + + +   
Sbjct: 203 ILSQSFVIVAEIQKEKTNREQLLDGLL---REMMRTELETKLRQANYEKKIKEVMELNQE 259

Query: 399 NIDEIIAIIRNEDKPKPVMVS------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446
                + II +  K K  ++                   NQ D I   +++ L +++E  
Sbjct: 260 INQMKVLIINSIQKAKEEIMKKDNEIKNLHEELENEKKNNQKDRINEEQIKELNEIKEMN 319

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                  ++ E E++  +L   K +   +  EI E KE   K  D         E  +  
Sbjct: 320 -----QKVITENEELKKILEELKIKEGALQKEIGENKEKGQKLQDEKEEFRKANEEMKIT 374

Query: 507 KATLQQAMIE 516
              L+Q + +
Sbjct: 375 TQELKQQLSQ 384


>gi|332645744|gb|AEE79265.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana]
          Length = 1239

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLL--MESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
           D    + +DV   L    R      +   + +  ++  E +     + L   + P+++  
Sbjct: 253 DSEKSNRKDVMRELEKFEREAGKRKVEQAKYLKEIAQREKKIAEKSSKLGKIQQPELLRF 312

Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
              +    A   ++   R     +  ++     + +     +I E+   +   +K +   
Sbjct: 313 KEEIARIKA---KIETNRKDVDKRKKEKGKHSKE-IEQMQKSIKELNKKMELFNKKRQDS 368

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL-LAEKEKIDSLLNSGKQQWNQI- 475
             +  + ++Q+      RL+    ++  +++ E + L    +  +++L N  +     I 
Sbjct: 369 SGKLPMLDSQLQD--YFRLKEEAGMKTIKLRDEHEVLERQRRTDLEALRNLEENYQQLIN 426

Query: 476 -ACEIREVKEIFSK 488
              ++ E  + F  
Sbjct: 427 RKNDLDEQIKRFKD 440


>gi|326932829|ref|XP_003212515.1| PREDICTED: coiled-coil domain-containing protein 21-like [Meleagris
           gallopavo]
          Length = 783

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 430 AILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +L ++ L+        Q   + ++L  EK +++  L + +     I   ++E  + +++
Sbjct: 390 YMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIQETLKENMQKYAE 449

Query: 489 STDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-HSVDLSALHF 545
                  R    E  ++   K   ++    KE    + +   ++  L +       +   
Sbjct: 450 DLKKQEERIKGREKHINNLKKKCQKEYEQNKERQQRIETLERYLADLPTLEDHQKQSQKL 509

Query: 546 KE 547
           KE
Sbjct: 510 KE 511


>gi|322792323|gb|EFZ16307.1| hypothetical protein SINV_05962 [Solenopsis invicta]
          Length = 697

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 91/282 (32%), Gaps = 39/282 (13%)

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305
            +      +++ +  V +G+       +P Q  +   +  +AEL       L+++    +
Sbjct: 25  KKYEILCISQFTLYHVLKGNKLDFHRAMPAQESEPFYMNFLAELRKEYVPDLVKETGARN 84

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + +   V  PKN +       ES     D ET   L   ++ +      +  +    E  
Sbjct: 85  SINTSRV--PKNDTSIQRQTRESQTGPEDTETIEQLKNQLVVLMNQLATLSAEKSKMEA- 141

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425
                      +F+M     R E            DE   +I++       + +      
Sbjct: 142 -----------NFQMDKKQLRSER-----------DECEKVIKDLKDKLKKVQNMNHSDM 179

Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--- 482
           +     L +           + + E D+ + + + +  LL   ++   Q+  +++     
Sbjct: 180 DHAKRQLIMV--------RQEREKEHDDFVKKIQDLQKLLQDERRSKEQLEGQLKTHLSN 231

Query: 483 ---KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
               +I  K  +  + +    E +  +   L  ++  +  + 
Sbjct: 232 KTQCKILEKELEFTKTKLKQVEEASREPPPLLLSLQNEMAVM 273


>gi|149638858|ref|XP_001507024.1| PREDICTED: similar to myosin VI isoform 2 [Ornithorhynchus
           anatinus]
          Length = 1261

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             ++    +  V F   +  + D +M+S         +   +  + S  +  Q   L  I
Sbjct: 745 NENDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAKLVKRVNHWLICSRWKKVQWCSLSVI 804

Query: 361 -LKEWLAHRREVLFR-----RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            LK  + +R     +     R     +    R++ L  +     ++D++  ++      K
Sbjct: 805 KLKNKIKYRANACIKVQKTVRMWLCKRKHRPRIDGLVKVRTLKHHLDKLNEVVSALKDGK 864

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           P M  +    E  +DA+  +    +  +   QI+SE D L+   E++ S L   KQQ  
Sbjct: 865 PEMSQQVKDLEISIDAL--MAKIKVTVMTREQIQSEYDALVKSSEQLLSSLQKKKQQEE 921


>gi|254303233|ref|ZP_04970591.1| hypothetical protein FNP_0875 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323425|gb|EDK88675.1| hypothetical protein FNP_0875 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 300

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 20/291 (6%)

Query: 282 LIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRS-------LDPDLLMESIFML 332
           +  KI E          E  RD  E  +++  V+     +        +    +   +  
Sbjct: 1   MKNKIEESYNKCLNLFKEGKRDTEEYRKELENVIELAKDNNEFKLCYFNAKFRLAQFYNE 60

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
                    +   L   +  +   LD I+      R    +  ++F  + +         
Sbjct: 61  KHKYDLSKKHFLELINDKNMEEFKLDAIMHHAYNLRILKKYDEATFWYEKLSELSTSKYY 120

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ------VDAILNLRLRSLRKLEEYQ 446
                  + +   ++ N +K +       S   N+       + ILNL+ + L  ++E  
Sbjct: 121 DEAVLEGLAKCATMVNNFEKERENYCILLSSCLNKEDFKSLAEKILNLKSQLLSTIDE-- 178

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
              + + + AE   +++ L++   +   I  +I +      K  D  +   T  E     
Sbjct: 179 --KQKEKISAEIIYLNNELDTAYYKLIDIKMKIAKSYFSEKKYEDCRKEVQTIFEFLEYS 236

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSV-DLSALHFKEGDSLKIALH 556
            + +Q   I    + +  S        K+    +  A   KE    K  + 
Sbjct: 237 ISDMQDYAITNANMLLGKSYFEEGNFEKAKEYFEPIANTPKEDKYYKYMIS 287


>gi|73974716|ref|XP_857167.1| PREDICTED: similar to plectin 1 isoform 1 isoform 4 [Canis
            familiaris]
          Length = 4587

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1787 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1846

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1847 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1897

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1898 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 1951

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 1952 LVED--TLRQRRQVEEEI 1967


>gi|110802333|ref|YP_699591.1| hypothetical protein CPR_2325 [Clostridium perfringens SM101]
 gi|110682834|gb|ABG86204.1| conserved domain protein [Clostridium perfringens SM101]
          Length = 292

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 400 IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
           IDE    I  ED  K +     +  + + + I   ++RSL K      K       A  E
Sbjct: 9   IDENKNPIETEDFAKALAAEEENSCKRKKEVI--EKIRSLAK-SAQNWKEANKEFNALIE 65

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIF 486
           + +++    ++  N +  E+RE K  F
Sbjct: 66  EFNNIYYYDQETENTLKNELREAKNEF 92


>gi|327342915|dbj|BAK09290.1| DNA gyrase subunit A [Streptococcus constellatus subsp. pharyngis]
          Length = 78

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 639 KTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG 696
           KT         +  ++ V GD  + ++     ++  ++  I +  R   GV++     G 
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTRRATLGVKVMRLDKG- 59

Query: 697 ISDVICFKICE 707
            + ++ F   E
Sbjct: 60  -AQIVTFTSVE 69


>gi|256383844|gb|ACU78414.1| viral A-type inclusion protein repeat protein [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256384675|gb|ACU79244.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455374|gb|ADH21609.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 753

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 92/269 (34%), Gaps = 17/269 (6%)

Query: 284 EKIAELII--AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
           EKI+ L     +    + D+  +   D+  V    +  +D  L + +   LS        
Sbjct: 283 EKISNLNNQINQVKSEISDLNKKKESDLMNVKSEIS-DIDKQLEIAN-TKLSQSNESISQ 340

Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
              V+   +  +        K  L  + E          +   + +  ++ L     N++
Sbjct: 341 LKEVIKQLKKDKSHSTLENQK--LDRQIEEKNTAIQKLEKEQQQYLTNIEKLNTQKSNLE 398

Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL--EEYQIKSELDNLLAEKE 459
           + +  I+ E++ K   +    L   ++        R   +L      + SE+ +L  E  
Sbjct: 399 QKLEKIKKENELKEQQLENQQLEYEKLS-------REYTRLLAFRIVLNSEISDLTNEIA 451

Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
               +L + K+   +    +  + + ++      + +    E  +++   L+    E E 
Sbjct: 452 AKKIILKNHKKFIEKEEQYLESLTKKYNSIKQDLKIKQQQFEQKKSELLMLKAQKTESEN 511

Query: 520 ITVVISNRG--WIRSLKSHSVDLSALHFK 546
               ++     +I   K  S ++  ++ K
Sbjct: 512 KISNLTKEQSEFIEKQKQLSTEIKEINNK 540


>gi|224122094|ref|XP_002318751.1| predicted protein [Populus trichocarpa]
 gi|222859424|gb|EEE96971.1| predicted protein [Populus trichocarpa]
          Length = 345

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           ++ ++G +G   G    +    +  +       +         ++E     D    G   
Sbjct: 107 HVTSSGLAGNGFGATREMSLRKLIWVVTRIHVQVQRYSC-WGDVVEIDTWVD--ATGKNG 163

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELI 290
             R+ I+  Y       R  + W +           +++IP +V++      I +++   
Sbjct: 164 MRRDWIIRDYNTKEIITRATSTWVI----MNRETRKLSKIPDEVREELVPFYINRLSIAA 219

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
               +  ++ + +E+A  +R  L P+   +D +  + ++  +  +    P+++ 
Sbjct: 220 EHNDVEKIDKLNNETAGRIRSGLAPRWSDMDANQHINNVKYIGWILESVPMHVL 273


>gi|154483119|ref|ZP_02025567.1| hypothetical protein EUBVEN_00820 [Eubacterium ventriosum ATCC
           27560]
 gi|149735927|gb|EDM51813.1| hypothetical protein EUBVEN_00820 [Eubacterium ventriosum ATCC
           27560]
          Length = 475

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 21/170 (12%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL-------RLRSLRKLEEYQIKSEL-D 452
           DEII II++++             EN + A+L         +L S+  LE         D
Sbjct: 24  DEIIQIIKSDEPAYKKKEELDDYHENDIAAVLEKLDVKERRKLYSIMGLERVSEVFAYLD 83

Query: 453 NLLAEKEKID-----SLLNSGKQQWNQ-IACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
           +     E++D      +L + +      I  E+ + K            +     +   D
Sbjct: 84  DPEEFIEELDSELAADILENMEADDAVDILDELEDEKSEELIQLMDKEAKKDIDLIQSYD 143

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556
              +   M       V ++    I+      V+ +A    + D++     
Sbjct: 144 DDEIGSKMTTN---YVTLTLNLTIKQAMKRVVEQAA----DNDNISTLYV 186


>gi|123434429|ref|XP_001308810.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121890508|gb|EAX95880.1| hypothetical protein TVAG_008910 [Trichomonas vaginalis G3]
          Length = 2263

 Score = 38.2 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 99/303 (32%), Gaps = 12/303 (3%)

Query: 193  SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE-SIVESYRLGRGG-- 249
            +  + E  E   A     +   +K L      D     I V ++E  I   Y        
Sbjct: 1940 NQALDEDLEDLDAHYKLLDFEYKKKLRENKNIDSFLFSIRVPTKEIGINTDYDNKSISEK 1999

Query: 250  ---FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306
                       +     G   I   EI     K  L +K     + ++I  LE       
Sbjct: 2000 QNIIESNNYQIISLRENGPRIIASKEIIENRNKMLLSQKEEIKALDQKIEHLEFSIPPMR 2059

Query: 307  EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366
            E   IV   K   L+ +  +E +  L         N+  +      +V  L   + E   
Sbjct: 2060 ERANIVSPQKRMRLNVESEVERVKKLVKEMDSQIENLIDIDRLTRGKVEDLRYFIDEKNK 2119

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
             +     RR       + + +EI+K       N  + + I               S    
Sbjct: 2120 -QLSEAQRRGKPDGLKLIKNLEIIKNNEQILQNKLKGLTIENEVLSQMKTGEEERSKESA 2178

Query: 427  QV-DAILNLRLRSLRKLEEYQIKS-ELDNLLAEK--EKIDSLLNSGKQQWNQIACEIREV 482
            Q+ + I  +  ++LRKL +   +  EL+ L      E+++S+     +  ++I+   RE+
Sbjct: 2179 QIREEIAEMS-KNLRKLMQEVKEKFELEQLTELIVPEELESIQKEKNKVNDEISTTDREI 2237

Query: 483  KEI 485
            K +
Sbjct: 2238 KNL 2240


>gi|309358962|emb|CAP33426.2| hypothetical protein CBG_15048 [Caenorhabditis briggsae AF16]
          Length = 1016

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 5/176 (2%)

Query: 310 RIVLFPKNRSLDPDLL-MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           RI++    R +D   + +  +  +   E  F L     +      V  +   + E    R
Sbjct: 291 RIIVGLLKRRVDEQSIHLNKLAYMYSREDVFGLGRKPRTDYLDEIVKFMKPRILECFKLR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                R  +         + I +G     +        +  + K    +  R  L     
Sbjct: 351 TWDDTRVVNSEKYRDQLALAIAEGENEQLI----GGVYLTEQWKKATRLDIRDKLIIKHW 406

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           +   + +   +  L    +     +L+ ++++  ++L +   +   I  E+  + E
Sbjct: 407 NYFADFKEIRMLSLSPEDVNEAQSDLMDDRKQAYTILVTNSLKLEGIKTELENIGE 462


>gi|115397747|ref|XP_001214465.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192656|gb|EAU34356.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1619

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427
           R +    R  +R  ++    ++ +  L     +D +    +  +     +     +  +Q
Sbjct: 374 RTKYDTEREGYRRDSVLENQKLEEENLALQNKLDIMERKAQIHEAALKKLNRERDMAVSQ 433

Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +          +  LE   +K+E ++L AE  ++ + L       ++   E  E ++  +
Sbjct: 434 L---------GVAYLESQDLKAENEDLRAEIAELKAQLTKLASFASKTREETLESEQTSA 484

Query: 488 KSTDLGRRRT 497
                   +T
Sbjct: 485 TEEGTDDSQT 494


>gi|308162170|gb|EFO64579.1| Coiled-coil protein [Giardia lamblia P15]
          Length = 2276

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 33/260 (12%)

Query: 280 SRLIEKIAEL--IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
             L + IA L   I  +   ++ + DE  +    ++  + R+      ++      D E 
Sbjct: 518 DALRKDIAALQSAIDDKDKEVKRLEDEIQQKNDTMIELRGRTESEIESLQETAASKDQE- 576

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHR---REVLFRRSSFRMQAIDRRVEILKGLL 394
                        +   + +   LK   A R     +L R  ++  + +  +  I+  L 
Sbjct: 577 ------IAKLEAELKSTLQMIEALKNSEADRSDATSILQREKAYLAEKLQEKENIVAELN 630

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRF-----SLTENQVDAILNLRLRSLRKL------- 442
            A    D  IA +      +            +L   Q   I +LR     K        
Sbjct: 631 EALRKKDLTIAELHESAAAQQRKEQETIDFYENLKREQNQVISDLRSSLSAKQATLAMAE 690

Query: 443 --------EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-EIFSKSTDLG 493
                   E   +KSE+D    E E + ++  S     +Q   E++ ++ E+  K  ++ 
Sbjct: 691 ETAKTLESEVQSLKSEVDAKTMEIESLLAMSTSKANDMDQTVEELQSLRTELLIKEGEIQ 750

Query: 494 RRRTTFCEVSRADKATLQQA 513
             R    E          + 
Sbjct: 751 ALRGLIEEKEEIIADLRMKE 770


>gi|118380067|ref|XP_001023198.1| hypothetical protein TTHERM_00494050 [Tetrahymena thermophila]
 gi|89304965|gb|EAS02953.1| hypothetical protein TTHERM_00494050 [Tetrahymena thermophila
           SB210]
          Length = 1181

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 96/269 (35%), Gaps = 44/269 (16%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR- 318
           +  +    +   E+ Y   +  L EK+ +L     I      +   +E+ + ++  KN  
Sbjct: 259 QAKQSQQSLKQLELEYTSLQQNL-EKLKKLNQELTIENNTIKQQYYSENQKNIILEKNSL 317

Query: 319 ---------SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
                     +      +    L+  + +     N   +  + +    + I+KE    + 
Sbjct: 318 KIYQLQKELDISQQNTQDIQMQLAQAQKQIQELKNQCELKMLEEKQMKEQIIKES-EIKV 376

Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNI-----DEIIAIIRNEDKPKPVMVSRFSLT 424
           +   +      Q  ++  +I + L      +     D+   +I+ + K K +  + +SLT
Sbjct: 377 DSQQKAFQLEQQKSEKEQQIRE-LKRDIEQLKEDLQDQKEKVIQEQQKNKDLKNNEYSLT 435

Query: 425 ------ENQVDAI-----------LNLRLRSLRKLEEYQI---------KSELDNLLAEK 458
                 E Q+  I              + +S +++EE Q+         + E+  L  + 
Sbjct: 436 KDIQTLEEQLQNIQNDHDKLQEKYARAQKQSQKEIEESQMIIDEIKSQTEGEILQLTKKC 495

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFS 487
           +K++S+    +Q    +  E+ E K+   
Sbjct: 496 QKLESINEDLEQNLKIVRSELEEFKKKHG 524


>gi|147900710|ref|NP_001080954.1| centromere protein E, 312kDa [Xenopus laevis]
 gi|2586071|gb|AAC60300.1| kinesin-related protein [Xenopus laevis]
          Length = 2954

 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 120/343 (34%), Gaps = 29/343 (8%)

Query: 201  EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES----IVESYRLGRGGFRVRARW 256
            E+ +   +   ++ E L E +   D   G +  E  E+    I  + ++     ++    
Sbjct: 1945 ESLIQCKEQLALNTEHLRETLKSKDLALGKMEQERDEAANKVIALTEKMSSLEEQINENV 2004

Query: 257  CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316
               + G G       + P    K +   ++ EL  + +            +D+++    K
Sbjct: 2005 TTLKEGEGEKETFYLQRP---SKQQSSSQMEELRESLK-----------TKDLQLEEAEK 2050

Query: 317  NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV---MPLDGILKEWLAHRREVLF 373
              S   + +      +S +E     N ++L+     +         ++ E       +  
Sbjct: 2051 EISEATNEIKNLTAKISSLEEEILQNASILNEAVSERENLRHSKQQLVSELEQLSLTLKS 2110

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI-- 431
            R  +F       + E  + +       +EI  + +  D+ +    S    + +  + +  
Sbjct: 2111 RDHAF----AQSKREKDEAVNKIASLAEEIKILTKEMDEFRDSKESLQEQSSHLSEELCT 2166

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKST 490
                L+ L++ +E  I ++L   + E +++   L+S K+Q +QI  E+R E    +    
Sbjct: 2167 YKTELQMLKQQKED-INNKLAEKVKEVDELLQHLSSLKEQLDQIQMELRNEKLRNYELCE 2225

Query: 491  DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533
             +         +        Q+     E + ++ S    I+ L
Sbjct: 2226 KMDIMEKEISVLRLMQNEPQQEEDDVAERMDILESRNQEIQEL 2268


>gi|149029060|gb|EDL84354.1| rCG41048, isoform CRA_a [Rattus norvegicus]
          Length = 3834

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I      + + + R    E     +L+  L+  
Sbjct: 3012 LQKADRR--------SLLTEIEDLRAQING----RKMTLEREQEIEKPSQELLDCNLQQK 3059

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +     +++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 3060 QS-HVLEMQLELGSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3118

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3119 LEAFRSEIKEKTDEIH 3134


>gi|123474368|ref|XP_001320367.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121903171|gb|EAY08144.1| hypothetical protein TVAG_302310 [Trichomonas vaginalis G3]
          Length = 1019

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 19/179 (10%)

Query: 322 PDLLMESIFMLSDMETRFPL-----NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376
             +   S+     +E R        N+N        +V P   ILKE +           
Sbjct: 408 AQIFSNSLLQNHCVEVRSRYEILQRNLNQAKQELEAKVEPNKQILKEIV----------- 456

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436
             R++  + +++IL            I+ ++ N  K      S     E + +       
Sbjct: 457 --RLRKREEKIKILLSQFFDVGEERNIVKLVFNALKTLTAEKSEQQKIEEKSEENPKF-E 513

Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             + +  E +    +  L  + E +   L + K+   ++   + E++  F+        
Sbjct: 514 EKVTEKSEIENDENIKELNDKIEDLTRKLANAKEMKQEMEERMNELQNDFANKQKSMDE 572


>gi|15668503|ref|NP_247301.1| hypothetical protein MJ_0329 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2833502|sp|Q57775|Y329_METJA RecName: Full=Uncharacterized protein MJ0329
 gi|1591048|gb|AAB98317.1| hypothetical protein MJ_0329 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 616

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 56/142 (39%), Gaps = 4/142 (2%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
            +Q      E+     +A  +   +I  I   ++   ++ +   LTE +V+ +L +    
Sbjct: 328 MLQKAKMVAELKAQEQVAKYDFSALIERIFPSNEFGEILAAYPDLTEKEVEKLLKMAKEG 387

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
              LE Y  + +   L  +++ ++ +++  ++  +      ++  E F         R  
Sbjct: 388 KGGLE-YADEEKQKLLEKKRKSLEKIISKLEKVGD---KFGKKSMENFVNWILETYERLG 443

Query: 499 FCEVSRADKATLQQAMIEKEPI 520
           + E+ +     L++   E+  +
Sbjct: 444 YNELMQDWDELLREFTREEVDM 465


>gi|207345362|gb|EDZ72210.1| YGL093Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 443

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 328 SIFMLSDMETRFPLN-MNVLSMGRVPQVMPLDGI---LKEWLAHRREVLFRRSSFRMQAI 383
            +    D +  FPLN  N +   R+  V     I   + E  A R + L+R  +      
Sbjct: 165 KLIDDLDKKVNFPLNSFNFVENQRIDNVFSAFYIDIPILEVEAFRCKELWRSINESKDKF 224

Query: 384 DR-RVEILKG----LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
                +I K     LL  Y + DE +  +  +     + + +              R + 
Sbjct: 225 KDFEAQIDKSHPPLLLQEYFSSDEKMKQLMRD----QLQLVKGYSKLEAAMEWYEWRKKQ 280

Query: 439 LRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
           L  LE         +K E + L  E EK++S+    ++    I  EIR +K + S S   
Sbjct: 281 LNGLELILAENLNTLKREYEKLNEEVEKVNSIRGKIRKLNEAIKEEIRSLKNLPSDSYKP 340

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
                   E  + +      ++      T
Sbjct: 341 TLMNRIKIEAFKQELMEHSISLSSSNDFT 369


>gi|26353574|dbj|BAC40417.1| unnamed protein product [Mus musculus]
          Length = 462

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 27  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEGEKNVYYLLEKDKEIQ 85

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E +  ++ E  +     ++ S + D+L   +   +   +     
Sbjct: 86  RLKDHLRSRYSSSSLFEQLEKKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 145

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 146 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 205

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 206 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 265

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 266 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 325

Query: 499 F 499
            
Sbjct: 326 E 326


>gi|118401925|ref|XP_001033282.1| hypothetical protein TTHERM_00420270 [Tetrahymena thermophila]
 gi|89287630|gb|EAR85619.1| hypothetical protein TTHERM_00420270 [Tetrahymena thermophila SB210]
          Length = 2309

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 73/248 (29%), Gaps = 10/248 (4%)

Query: 280  SRLIEKIAELIIAKRIPLLEDI-RDESAEDVRIVLFPKNRSLDPDLLM--ESIFMLSDME 336
              + +K+ EL  A     LE +  DE  + +  ++  K + ++   ++    +   +D  
Sbjct: 939  EEVEKKVKELKEANEQVQLEILTNDEDVQKIINIIKQKEQEINSKRIIMENILLQQADQA 998

Query: 337  TRFPLNMNVLSMGRVPQVMPLDGI----LKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
             +  +         + +      +    L      R  +   +     +  + + +I K 
Sbjct: 999  FQDYIEQQSEVFEGLQKTYGSKALQQIKLGHHKQFREIMKQNQEKRMQKFEEVQAQITKL 1058

Query: 393  LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
                  NI  +   +  +       +      ++Q+       L   ++ E         
Sbjct: 1059 NQQIQDNIKYVDTNLSEDLGAIQAQIDDSFQKKSQLQVDYQTILEKEKEFERQLESLLQA 1118

Query: 453  NLLAEKEKIDSLLNSGKQQWNQIACEIRE--VKEIFSKSTDLGRRRTTFCEVSRADKATL 510
              +   E +   +   + +   I   ++    ++I+S        +    +         
Sbjct: 1119 KKVKVIEILQKEIEDCESEIKIIEQNLKNLLTQDIYSLPLKEQINKLN-IQTFEDSYDRN 1177

Query: 511  QQAMIEKE 518
            ++     E
Sbjct: 1178 KENQNPNE 1185


>gi|73974722|ref|XP_857294.1| PREDICTED: similar to plectin 1 isoform 1 isoform 7 [Canis
            familiaris]
          Length = 4544

 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 305  SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364
            + +   +         + ++L+ S     +                  +   L       
Sbjct: 1744 THKRQELEAELAKVRAEMEVLLASKARAEEESRSTSEKSKQRLEAEASRFRELAEEAARL 1803

Query: 365  LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424
             A   E   +R      A  +R E  + L      I E   +    +           L 
Sbjct: 1804 RALAEETKRQRQLAEEDAARQRAEAERVLAEKLAAISEATRLKTEAEIA---------LK 1854

Query: 425  ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            E + +   N RLR L + E +Q +   +     K  I+  L    Q       E+   K 
Sbjct: 1855 EKEAE---NERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA---QLRKASENELERQKG 1908

Query: 485  IFSKSTDLGRRRTTFCEV 502
            +      L +RR    E+
Sbjct: 1909 LVED--TLRQRRQVEEEI 1924


>gi|300390195|ref|NP_001032170.2| A-kinase anchor protein 9 [Rattus norvegicus]
          Length = 3771

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
            +Q  DRR             I+++ A I      + + + R    E     +L+  L+  
Sbjct: 2949 LQKADRR--------SLLTEIEDLRAQING----RKMTLEREQEIEKPSQELLDCNLQQK 2996

Query: 440  RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
            +     +++ EL +L     ++   L+S K    ++  E+ + K     +     +R   
Sbjct: 2997 QS-HVLEMQLELGSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKE 3055

Query: 500  CEVSRADKATLQQAMI 515
             E  R++       + 
Sbjct: 3056 LEAFRSEIKEKTDEIH 3071


>gi|149638856|ref|XP_001507065.1| PREDICTED: similar to myosin VI isoform 3 [Ornithorhynchus
           anatinus]
          Length = 1275

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360
             ++    +  V F   +  + D +M+S         +   +  + S  +  Q   L  I
Sbjct: 745 NENDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAKLVKRVNHWLICSRWKKVQWCSLSVI 804

Query: 361 -LKEWLAHRREVLFR-----RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414
            LK  + +R     +     R     +    R++ L  +     ++D++  ++      K
Sbjct: 805 KLKNKIKYRANACIKVQKTVRMWLCKRKHRPRIDGLVKVRTLKHHLDKLNEVVSALKDGK 864

Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           P M  +    E  +DA+  +    +  +   QI+SE D L+   E++ S L   KQQ  
Sbjct: 865 PEMSQQVKDLEISIDAL--MAKIKVTVMTREQIQSEYDALVKSSEQLLSSLQKKKQQEE 921


>gi|301761452|ref|XP_002916146.1| PREDICTED: centrosomal protein of 55 kDa-like [Ailuropoda
           melanoleuca]
 gi|281345305|gb|EFB20889.1| hypothetical protein PANDA_004193 [Ailuropoda melanoleuca]
          Length = 463

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 33/282 (11%)

Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLEDIR 302
             +   R+  +  V E  R      +TE      K + I+++ E + AK     LLE + 
Sbjct: 52  TDKDRHRLLEKIRVLEAEREKNVYHLTE------KDKEIQRLREQLKAKYSNTALLEQLE 105

Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM--ETRFPLNMNVLSMGRVPQVMPLDGI 360
           +++ E  R     K  S + D+L + +   +    E     +   LS             
Sbjct: 106 EKTKEGERREQLLKALSEETDVLKKQLSATTARLAELESKASTLRLSQTVATSCFNSSMS 165

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--DKPKPVMV 418
               +  + +    ++   +    +R   +KGLL     +++      +    + K    
Sbjct: 166 DIHEMEIQLKDALEKNQQWLVYDQQREAYVKGLLAKIFELEQKSETAAHSLPQQTKKAES 225

Query: 419 SRFSLTENQ-------VDAILNLRLRSLR----KLEEYQIKSELDNLLAEKEKIDSLLNS 467
             +   E Q        +A  +L +          E  + + + +    E E ++ LL S
Sbjct: 226 EGYLQEEKQKYYNHLLANAKKDLEVERQTITQLSFELSEFRRKYEETQKEVEDLNKLLCS 285

Query: 468 ----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
                       +   +    ++E  +I  +  +  ++R+  
Sbjct: 286 QRKADVQHLEDDRHKTEKIQRLKEENDIAREKLEEEKKRSEE 327


>gi|225859041|ref|YP_002740551.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
 gi|225721362|gb|ACO17216.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
          Length = 1179

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|121713140|ref|XP_001274181.1| myosin type II heavy chain, putative [Aspergillus clavatus NRRL 1]
 gi|119402334|gb|EAW12755.1| myosin type II heavy chain, putative [Aspergillus clavatus NRRL 1]
          Length = 2406

 Score = 38.2 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 242  SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
             YR+GR     RA    E   +    I      +Q      +++        RI      
Sbjct: 841  WYRVGRTKVFFRAGVLAELEEKRDQLIRTIMTRFQSAARGFVQR--------RISNKRLY 892

Query: 302  RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP----QVMPL 357
            R E+   +R      N  +  D+     + L              +  +      + +  
Sbjct: 893  RAEATRIIRH-----NFHVYLDMKRNPWWRLFSRMKPLLGETRTANEVKRRDEKIKELES 947

Query: 358  DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417
                      R +   RR+   +  I + +E  + L +    I + + +   E   K   
Sbjct: 948  KMQQDIVERQRLDEERRRTEVEIHKIQQILESERALALDKEEIFKRLQLREIELSEKLAG 1007

Query: 418  VSRFSLT-ENQVDAILNLRLR-------SLRKLE-----EYQIKSELDNLLAEKEKIDSL 464
                  + ++Q+D ++  + +        + +LE       +++SE   L A  E++DS 
Sbjct: 1008 AIADQESLDDQLDGLIAAKKKTDEQLSHRITQLEQAGEIIQRLESEKQELQARLEELDSR 1067

Query: 465  L---NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502
            L    S   +      ++ +  ++      L  R+    E 
Sbjct: 1068 LLGAESSSAEKEAHVKDLEQDMKMLESHLSLKDRKLQELEA 1108


>gi|332074857|gb|EGI85329.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41301]
          Length = 1179

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---TTITSEKNNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVTDIERLGKELDNLDIEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|164427433|ref|XP_955770.2| hypothetical protein NCU03483 [Neurospora crassa OR74A]
 gi|166951800|sp|Q01397|DYNA_NEUCR RecName: Full=Dynactin, 150 kDa isoform; AltName: Full=150 kDa
           dynein-associated polypeptide; Short=DAP-150;
           Short=DP-150; AltName: Full=p150-glued
 gi|157071741|gb|EAA26534.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1367

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 29/285 (10%)

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +   ++  R    + +   P Q +   L  ++ E     R+  +E+++ E    + + 
Sbjct: 357 KVKAERDKFERIIQTLQIKYQPQQQEIQDLKRQLKEA--ENRLYNVEELQAEHDTAMELA 414

Query: 313 LFPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
              +  + +  ++L   +  L        L + VL          +    +        +
Sbjct: 415 TLDREMAEETAEVLKVELDALKQKNEELELEVEVLREENSEFTNGMSPEERAST---GWL 471

Query: 372 LFRRSSFRMQAIDRRV---------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
              R++ R++    R+         E+   +     ++ E   I       K  +    +
Sbjct: 472 QMERNNERLREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEA 531

Query: 423 LTENQVDAI-----LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + E+  + +         + SL + +      E+  L A  + ++SL         +I  
Sbjct: 532 IVEDLREQLNNALGAEEIIESLTE-QTMNQSEEIKELRAVIDDLESL--------KEIND 582

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           E+        K               +  +A LQ+  +E    T+
Sbjct: 583 ELEINHVQNEKEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTL 627


>gi|145552356|ref|XP_001461854.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429690|emb|CAK94481.1| unnamed protein product [Paramecium tetraurelia]
          Length = 932

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 85/274 (31%), Gaps = 48/274 (17%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           K +L+ +  ++    +   + D+++E+   +R +        DP               +
Sbjct: 377 KKKLLNEFDKVKREYKFE-IVDLQEENQRMMRSIKEEMKSQFDP---------------K 420

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEW-LAHRREVLFRRSSFRMQAI-DRRVEILKGLLIA 396
           F     V S       +    +L+     +R   + +R S  ++ I  ++ ++ + L   
Sbjct: 421 FSQIQQVFSDQLQNIELSESQMLQSQIYDYRNLDIEQRKSENVKKITQQKEKLFQQLQNQ 480

Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA--------------ILNLRLRSLRKL 442
             N++        E K K     R  L + Q D                L + +   R L
Sbjct: 481 LANLERQTNEKYQEMKRKLEETQRLKLEKIQKDFEKKTGRVLGNGKEIDLCMDINQTRSL 540

Query: 443 EEYQIKSELDNLLAEKEKIDSLLNS------------GKQQWNQIACE---IREVKEIFS 487
               ++ E+     +K   +  L S              +Q + I  E   ++ +   + 
Sbjct: 541 THE-LREEIKQFKRKKTDAEEKLASMNIVVSKYDLQNELKQKDVIKFELDRLQYLVNQYK 599

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521
           +   +  +     E          Q   +K+   
Sbjct: 600 QDDKIADKELELLEQQYQQMIRKHQEFQQKQQTM 633


>gi|145493409|ref|XP_001432700.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399814|emb|CAK65303.1| unnamed protein product [Paramecium tetraurelia]
          Length = 736

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAE---------DVRIVLFPKNRSLDPDLLMES 328
              ++ E   + +I +    +  ++DE A               +  +   ++ D  +  
Sbjct: 339 NNPKINEDPKDAMIREFQEQINKLKDELARKAGGVIGPNGQIQKIKEQVIEVEDDEELTE 398

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +   +  E        +    +          L+  L  ++++       +     +  E
Sbjct: 399 LQKKAQKEKADLEQQIMQQRRQSTLQEEEKKQLQLKLKEKQKLEHNLKKEQENMQKKLQE 458

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSL-----R 440
           + + LL      +E     ++  K +  +  R      Q + +     +++         
Sbjct: 459 LQEQLLHGDKMKEETRQKEKDLLKARMELEERSQQARRQAEELAKKEAMQMEQEQKYNST 518

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           K E      +L+NL+ + +++ S      Q   +   E+ E 
Sbjct: 519 KEEIEAKTQKLNNLIQKIKELKSQAQEQTQFRQRQKEELIED 560


>gi|116619181|ref|YP_821337.1| hypothetical protein Acid_0036 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222343|gb|ABJ81052.1| hypothetical protein Acid_0036 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 708

 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 38/96 (39%)

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D + +  +A T   +   + D    T     L  G     A       ++ +D   AF
Sbjct: 160 KDDVVAVLFYASTIQVLSDFTADRDVLTHVIKTLPIGEASELAALADTGDDNGEDTQAAF 219

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642
           V D T   +  + K  A I + S+++A+  + K  +
Sbjct: 220 VADETEFNIFATDKKLAAIEQASKMLASFPEKKALV 255


>gi|289614125|emb|CBI61494.1| unnamed protein product [Sordaria macrospora]
          Length = 1366

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 89/277 (32%), Gaps = 24/277 (8%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E  +    I   +I YQ  + + I+ +   +      L      ++  D  + L   +R 
Sbjct: 364 ERDKFERIIQTLQIKYQ-PQQQEIQDLKRQLKEAETRLYNVEEMQAEHDTAMELATLDRE 422

Query: 320 LDPD------LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL-AHRREVL 372
           +  +      + ++++   ++        +   +      + P +     WL   R    
Sbjct: 423 MAEETAEVLKVELDALRQKTEELELEVEVLREENSEFTNGMSPDERASTGWLQMERNNER 482

Query: 373 FRRSSFRMQAI--DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            R +  R++ I   +  E+   +     ++ E   I       K  +    ++ E+  + 
Sbjct: 483 LREALIRLRDITQQQEEELRDQIKSMEEDLREFETIKEQHTTAKEKLGQTEAIVEDLREQ 542

Query: 431 I-----LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +         + SL + +      E+  L A  + ++SL         +I  E+      
Sbjct: 543 LNNALGAEEIIESLTE-QTMNQSEEIKELRAVIDDLESL--------KEINDELEINHVQ 593

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
             K               +  +A LQ+  +E    T+
Sbjct: 594 NEKEMQEEIDLKDAVIAEQFRQANLQRESLEDMEYTL 630


>gi|324500000|gb|ADY40014.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1854

 Score = 38.2 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 19/294 (6%)

Query: 231 IIVESRESIVESYRLGRGGFRVRARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEK 285
           I ++ RE I ++  L  G          E        R     + T++   + K   +E 
Sbjct: 553 IEIKKREDIEKANLLHIGEIEKLKAQITEYESQVMMLRRHNDELDTQLKTTMAKITTLEN 612

Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF-PLNMN 344
                  +   L E       E   I+   +   ++ D L E +  L     +    N  
Sbjct: 613 SLTSAQNEITKLSELNSKLQKEKNEIMSLKQKSDMEVDALKERVRKLEKEMEKIESENRT 672

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           +       +    + + K    H+ E   + +   +  + RR             +D+  
Sbjct: 673 LRESEEKARQAYKEEVNKV---HQLERELQEAKAEIDELRRR----------LAALDQEN 719

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
                                 Q+  I    L    +L+  ++++E D L    + ++  
Sbjct: 720 KERLESALRGRGGDKSDIYESTQITEIRVKELGDKHRLDLERLENERDELARRVQLLEDE 779

Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           L   ++  ++   +I ++K  +    D  +      E    ++   ++   + E
Sbjct: 780 LAEKQRIIDRQKTDIEDLKRQYQAEIDRLKAELVNLETKYQNELEDERDQHQHE 833


>gi|148709849|gb|EDL41795.1| centrosomal protein 55, isoform CRA_a [Mus musculus]
          Length = 467

 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 35/301 (11%)

Query: 233 VESRESIVESYRLGRGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELI 290
           +E  +  + +++          +  + E  R      I V E   +     L+EK  E+ 
Sbjct: 32  LEKFKGEIAAFKTSLDEITS-GKGKMAEKDRSRLLEKIQVLEAEREKNVYYLLEKDKEIQ 90

Query: 291 I--------AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
                         L E + +++ E  +     ++ S + D+L   +   +   +     
Sbjct: 91  RLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESK 150

Query: 343 MNVLSMG--RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            + L +                     + +    ++   +    +R   +KGLL     +
Sbjct: 151 ASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFEL 210

Query: 401 DEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR---------KLEEYQIK 448
           ++              K        + + + D +L    + L          +LE  + +
Sbjct: 211 EKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFR 270

Query: 449 SELDNLLAEKEKIDSLLNS----------GKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
            + +    E E ++ LL+S            +Q  +   ++RE   IF    +  R+R+ 
Sbjct: 271 RKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSE 330

Query: 499 F 499
            
Sbjct: 331 E 331


>gi|169796605|ref|YP_001714398.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii AYE]
 gi|184157485|ref|YP_001845824.1| ATPase [Acinetobacter baumannii ACICU]
 gi|213156282|ref|YP_002318702.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB0057]
 gi|215484066|ref|YP_002326291.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB307-0294]
 gi|239503505|ref|ZP_04662815.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB900]
 gi|260557553|ref|ZP_05829768.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii ATCC 19606]
 gi|301346300|ref|ZP_07227041.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB056]
 gi|301510716|ref|ZP_07235953.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB058]
 gi|301597427|ref|ZP_07242435.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB059]
 gi|332853545|ref|ZP_08434809.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013150]
 gi|332868410|ref|ZP_08438141.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013113]
 gi|332872452|ref|ZP_08440423.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6014059]
 gi|169149532|emb|CAM87421.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii AYE]
 gi|183209079|gb|ACC56477.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii ACICU]
 gi|193076896|gb|ABO11616.2| ATP-dependent protease Hsp 100 [Acinetobacter baumannii ATCC 17978]
 gi|213055442|gb|ACJ40344.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB0057]
 gi|213987437|gb|ACJ57736.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii AB307-0294]
 gi|260409179|gb|EEX02482.1| ATP-dependent chaperone ClpB [Acinetobacter baumannii ATCC 19606]
 gi|322507800|gb|ADX03254.1| clpB [Acinetobacter baumannii 1656-2]
 gi|323517400|gb|ADX91781.1| ATPase with chaperone activity, ATP-binding subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728578|gb|EGJ59950.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013150]
 gi|332733409|gb|EGJ64592.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6013113]
 gi|332739338|gb|EGJ70194.1| ATP-dependent chaperone protein ClpB [Acinetobacter baumannii
           6014059]
          Length = 859

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDAGSKAEVTHLEKQIAEVEKEYNDLEEVWKAE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|169633163|ref|YP_001706899.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii SDF]
 gi|169151955|emb|CAP00815.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
           with DnaK, DnaJ, and GrpE [Acinetobacter baumannii]
          Length = 859

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDAGSKAEVTHLEKQIAEVEKEYNDLEEVWKAE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|149002615|ref|ZP_01827547.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|237649947|ref|ZP_04524199.1| hypothetical protein SpneC1_04341 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822504|ref|ZP_04598349.1| hypothetical protein SpneC19_09414 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147759226|gb|EDK66219.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|332200694|gb|EGJ14766.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41317]
          Length = 1179

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---TTITSEKNNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVTDIERLGKELDNLDIEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|115768313|ref|XP_783376.2| PREDICTED: similar to Viral A-type inclusion protein repeat,
           partial [Strongylocentrotus purpuratus]
 gi|115967964|ref|XP_001186550.1| PREDICTED: similar to Viral A-type inclusion protein repeat,
           partial [Strongylocentrotus purpuratus]
          Length = 1254

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 21/264 (7%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324
              +++T+     + + L EK  E    K     +    E       V        + + 
Sbjct: 336 KEDLIITKDEANARANALEEKAHEWEREKEREQTKMEEYEEDMSRLKVQVE-----ELNT 390

Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI------LKEWLAHRREVLFRRSSF 378
           L + +  L   +         LS         +         L E L   +      +  
Sbjct: 391 LKDQLTKLGAEKDSLKTEGERLSEDNSRLTASMRETAEERTHLSEELESLKSGQTDLNQV 450

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             + +D   +    L      ++     ++ E   K   +     +       +  + + 
Sbjct: 451 LQKQLDDTTKEKNSLKKNLQELELSYGCLQKEATAKEAELEEIKRS-------VGEKEQQ 503

Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
           L KL+E ++K E + +   +  +   L+S K+   ++  E++ V E  S   +      T
Sbjct: 504 LEKLQEDKLKKE-EEMTKIEGSLQQSLDSAKEDAERMKEELKSVGEGVSSEENKKVEDLT 562

Query: 499 FC--EVSRADKATLQQAMIEKEPI 520
               E+ +  K   +  + + E +
Sbjct: 563 NAKGELEKIIKEMKEDVVRKDEEM 586


>gi|71649031|ref|XP_813274.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878143|gb|EAN91423.1| hypothetical protein Tc00.1047053506367.170 [Trypanosoma cruzi]
          Length = 457

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420
           LKE+  H++ +   R   R + +  + E  + +     +I+            +      
Sbjct: 197 LKEFTEHQKLLQAERERHRERFLVLQEETTRTVNSLTADIE------------RQQRQHL 244

Query: 421 FSLTENQVDAILNLR-LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             + E Q    + ++ L    + E     +E      E ++I + +   +    ++  E+
Sbjct: 245 REIREVQRQHTVQVKDLERQLQEEREAHATESQKRTEELDQIQATVKKLEGDKTRLMQEL 304

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
            E      +       R +  ++ R +       +  +E  T 
Sbjct: 305 SEQHSQVEEWRRRYNERDSLAKLERIEHQARFDELHVEEAQTF 347


>gi|315052402|ref|XP_003175575.1| dynactin [Arthroderma gypseum CBS 118893]
 gi|311340890|gb|EFR00093.1| dynactin [Arthroderma gypseum CBS 118893]
          Length = 1358

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 81/225 (36%), Gaps = 11/225 (4%)

Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
           GS  +V  E+     K +++EK        ++ ++E  R E  +   I+   + +     
Sbjct: 295 GSNALVQKELDDLRTKLKIMEKKRTEDRE-KLKMVEAYRAERDKFETIIQKLREKYQPQQ 353

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             + ++      E  + +            ++ +  + +E           ++ +     
Sbjct: 354 QEITTLRKQL-KEAEYRVEEVERLQAEHESILEMAALDREMAE--EVAESIKAEYEALKF 410

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
                 L+  ++   N D++  ++  E+K     +      E   +A+  +RLR + + +
Sbjct: 411 RTEELELEVEVLKEEN-DQLGQVMSPEEKSSQGWLQMERTNERLREAL--IRLRDMTQQQ 467

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           E  +K ++  L  E +      N+ K Q+     ++ E +     
Sbjct: 468 EADLKDQVKELEEELKDY----NNLKAQYESTKEKLLESEANMED 508


>gi|298383959|ref|ZP_06993520.1| hemolysin secretion protein [Bacteroides sp. 1_1_14]
 gi|298263563|gb|EFI06426.1| hemolysin secretion protein [Bacteroides sp. 1_1_14]
          Length = 446

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 30/257 (11%)

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I  PD  TG I + ++   V       G   + +    EEV +G + I V + P   + 
Sbjct: 56  IIKYPDMVTGQIKINAQNPTVRLVANSTGNLLLLSHKAQEEVKKGEY-IAVVQNPASTED 114

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            R   KIA+LI                           +   PD +   +  ++     F
Sbjct: 115 VR---KIADLINRIDFDG--------------THLLALKDTFPDKV--YLGEINPQYYAF 155

Query: 340 PLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              +       +          +   +  +++++ R +    +A   R+++ +  L  Y+
Sbjct: 156 LAALKAQCDYLQQNVYEKQRENITTSIEWKKKIV-REAEDSQKAAKDRMDVARKWLKRYV 214

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQ----VDAILNLRL----RSLRKLEEYQIKSE 450
           ++D+        +  +       ++ E Q      A   +++      L +LE  Q++ E
Sbjct: 215 SLDQQEIATYEYETDQIKNNYLTTVQEVQNINREIASTRMQITEAYHRLEQLEVEQLEKE 274

Query: 451 LDNLLAEKEKIDSLLNS 467
            +  +       +L+ +
Sbjct: 275 RELKVELLSTHQNLIAN 291


>gi|254583466|ref|XP_002497301.1| ZYRO0F02398p [Zygosaccharomyces rouxii]
 gi|238940194|emb|CAR28368.1| ZYRO0F02398p [Zygosaccharomyces rouxii]
          Length = 215

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 29/149 (19%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL--------------------RLRSLR 440
           D     I+N ++ K +++ +    E+Q +AI+NL                    RL  L 
Sbjct: 32  DFETVHIQNTNRYKQLLMEKGKFEESQANAIVNLMSDALRGGISHVSQDLAKRERLTQLT 91

Query: 441 --------KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492
                   KL +  + ++       +   + +     +  N++  EI +    F     L
Sbjct: 92  YQQRVDFAKLRDQLLTADRSEFHNLQNDYERVRKDLDKLKNKVKEEITKANASFKLDLSL 151

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT 521
            + R    E S  D    +      + IT
Sbjct: 152 EKGRIRE-ESSHHDMQIKEIDTRIDKEIT 179


>gi|224063826|ref|XP_002195538.1| PREDICTED: similar to Coiled-coil domain-containing protein 102A
           [Taeniopygia guttata]
          Length = 519

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 25/233 (10%)

Query: 272 EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
           E+P + ++  L+E I      +           S ++   +L+      D  ++ E    
Sbjct: 167 EVPQKAKELELMENILTSKQDESWEQRGPRASFSRQERSRLLWE-----DVSVVEEDATK 221

Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
           ++ ++ R   +  VL   R  ++     I K      +  +       +    + V    
Sbjct: 222 VTALKLRLDESQKVLLKEREDKLALSKNIEKLEGELSQWKIKYE---ELNKNKQEVMKQL 278

Query: 392 GLLIAYLNIDEIIAIIRNEDKP--------KPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
            +L    + DE+  I  + +          K +   R  +   Q +       R   + E
Sbjct: 279 NILKEI-HQDELGRISEDLEDELGARSSMDKKLAELRAEMERLQAENAAEWGRRERLETE 337

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQ--------WNQIACEIREVKEIFSK 488
           +  ++ E   L A+ E ++ +L   ++Q           I  E+ E  +  + 
Sbjct: 338 KLNLERENKKLRAQIEDLEEVLARKRRQTASALDTDLKTIQAELFEKNKELAD 390


>gi|241954108|ref|XP_002419775.1| myosin-like protein, putative [Candida dubliniensis CD36]
 gi|223643116|emb|CAX41990.1| myosin-like protein, putative [Candida dubliniensis CD36]
          Length = 1816

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 69/191 (36%), Gaps = 4/191 (2%)

Query: 313  LFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
            +      L+P    +  +    + E +    ++  +       +  +    +   H  E 
Sbjct: 1399 IITLGNELNPLKEHINELTTNLEFEQQKAKLLSEENERIKSAALSTEEQKSDANKHTSEA 1458

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
            + R      +   +  E ++ +     + DE I  +  +        +    ++ Q++  
Sbjct: 1459 IARMQEQMDKLKTKANERIRSMNETIASKDETIKQLNEKVDQLTNAATNEDKSKEQIEQ- 1517

Query: 432  LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG-KQQWNQIACEIREVKEIFSKST 490
            LN +L SL+  E    K+E D L  +  +++S L +   ++  +I   +   K+  +   
Sbjct: 1518 LNTKLTSLQS-EVENAKNEKDELFKKLNELESNLRAEFDKEKQEIIKSLELAKQANASDE 1576

Query: 491  DLGRRRTTFCE 501
             L ++     E
Sbjct: 1577 QLQKKYKELEE 1587


>gi|198436429|ref|XP_002123235.1| PREDICTED: similar to nonmuscle myosin heavy chain [Ciona
            intestinalis]
          Length = 1953

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 54/150 (36%), Gaps = 6/150 (4%)

Query: 374  RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433
            ++    +  ++     L+    A       +     +++ K  M+S+       V + L 
Sbjct: 978  KKMDEDLNLLEDAQSKLQRERKALEERVNELEGTLGDEEEKAKMLSKLKHKNESVISDLQ 1037

Query: 434  LRLRSLRKLEEY------QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
             RL+   KL +       Q+++E+  L  +   +   L   + Q  +   E+  +++ F 
Sbjct: 1038 ERLKKEEKLRQELEKIKRQLEAEIAELREQIADLQLQLEELRVQNQRKDDELAALQDKFD 1097

Query: 488  KSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
            +      +        +   A + + + ++
Sbjct: 1098 QEQTARSQLAKNHRELQNQNAEVLEDLEQE 1127


>gi|118384189|ref|XP_001025247.1| hypothetical protein TTHERM_00836740 [Tetrahymena thermophila]
 gi|89307014|gb|EAS05002.1| hypothetical protein TTHERM_00836740 [Tetrahymena thermophila
           SB210]
          Length = 597

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 100/291 (34%), Gaps = 28/291 (9%)

Query: 213 SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTE 272
             E+++ + +        I    +  I           R   +  ++   +    I ++ 
Sbjct: 13  DQEEIIRFFLQDLQSQIHIPFAQKRIIQGVEEDPEIELRFAVQEVIQREEQIKCLIEIS- 71

Query: 273 IPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL---FPKNRSLDPDLLMESI 329
                  + L+ KI E   A +I  ++   D   + +++ +       R +D     E  
Sbjct: 72  -------NSLLNKIDE--QALKIEDIQHKLDSQNQQIQLQIEYVIELQRRVD-----EQR 117

Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
              + +E +F    N L   ++  V     + K        +  + S F ++     + +
Sbjct: 118 DQYNQLEEKFNYTENELCQKKIELVTANSSLQKL-----ERIEQKYSEFEIKEQYDTITL 172

Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI--LNLRL---RSLRKLEE 444
               +          +I  N +  K  M+ +  + ENQ D I  L+L+L   R   K+  
Sbjct: 173 SMYKVKVDQIQQINQSIAHNLELTKQQMIDQNIIIENQKDQIKLLDLQLTNERQQNKILS 232

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            QI +    ++ +    + LL +  + +  I   + +      + ++   R
Sbjct: 233 SQIVTLESQIINQSHDFEDLLENQGEIFKIINSILIDQIMKQLQLSERIDR 283


>gi|327310631|ref|YP_004337528.1| hypothetical protein TUZN_0726 [Thermoproteus uzoniensis 768-20]
 gi|326947110|gb|AEA12216.1| hypothetical protein TUZN_0726 [Thermoproteus uzoniensis 768-20]
          Length = 423

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------PVMVSRFSLT 424
           +  R +  +Q ++ R + LK      +  D  +  ++ E + K          V    + 
Sbjct: 229 MLGRYASMLQELEEREKALKAREEEIMRRDLDLKKMQQELEAKRLELEQREARVRELEVK 288

Query: 425 ENQVDAILNLRLRSLRKLEE-----YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
             + +A L    R   +LE         K EL+ L+A+ + I+  L + + ++++I   +
Sbjct: 289 GKEAEAKLQELERRRAELERIEQDIEAKKKELEELVAKYKNIEEALKNKEAEYSKIEDYV 348

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525
           R  KE+          R    E SR  +   +    E+E ++   S
Sbjct: 349 RR-KEMELMDGLAPFARRLIEEESRLAQWQKRLLEQEREILSFYRS 393


>gi|224090304|ref|XP_002194218.1| PREDICTED: retinoic acid induced 14 [Taeniopygia guttata]
          Length = 972

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 102/292 (34%), Gaps = 25/292 (8%)

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G    +    + E+      L    + +  +L +Y               R+   +   +
Sbjct: 624 GERKDVMHRTIDELNRQLSDLSQLYKEAQTELEDYRKKKTLDDIASDYIPRDEHDKLMEV 683

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL------LE 299
                + +A   + E+ +  +  V+ E       S+ ++++ ++     +P+      + 
Sbjct: 684 TN-SLKYKAESELSEM-KSQYTKVLGE-------SKELKQLLDIQKQNSLPITEHRQVIN 734

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            +R+   E    +   K    + +  + ++      E        V  +        L+G
Sbjct: 735 ALRNTIKEMEEEINELKRLLSNKESELRNLEKALLEEKAAINEAMVPKVTYEKLQSSLEG 794

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +    +  ++V+  + +  + A+  R EIL        ++ E    +    + K   VS
Sbjct: 795 EVSALSSKLKDVIREKENISLDAMKLRNEIL--------HLKETKEGMHTLLEAKEREVS 846

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
                 +QV   L   L++  KLEE +   +++ +  E  K+   LNS  Q 
Sbjct: 847 DLQHKYHQVQEALT-ELKNSSKLEEDK-DKKINEMSKEISKLKEALNSLSQL 896


>gi|224136230|ref|XP_002322277.1| predicted protein [Populus trichocarpa]
 gi|222869273|gb|EEF06404.1| predicted protein [Populus trichocarpa]
          Length = 323

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 64/174 (36%), Gaps = 10/174 (5%)

Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233
           ++ ++G +G   G    +    +  +       +         ++E     D    G   
Sbjct: 85  HVTSSGLAGNGFGATREMSLRKLIWVVTRIHVQVQRYSC-WGDVVEIDTWVD--ATGKNG 141

Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS---RLIEKIAELI 290
             R+ I+  Y       R  + W +           +++IP +V++      I ++A   
Sbjct: 142 MRRDWIIRDYNTQEIITRATSTWVI----MNRETRKLSKIPGEVREELQPFYINRLAIPA 197

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344
               I  ++ + DE+A  ++  L P+   +D +  + ++  +  +    P+++ 
Sbjct: 198 EHNDIEKIDKLTDETAGRIQSGLAPRWSDMDANQHVNNVKYIGWILESVPMHVL 251


>gi|301800167|emb|CBW32772.1| putative chromosome partition protein [Streptococcus pneumoniae
           OXC141]
          Length = 1179

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|302142321|emb|CBI19524.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 59/183 (32%), Gaps = 9/183 (4%)

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                  V + +   G + +W AHR + + RR     +    R +I +    A    D  
Sbjct: 108 TAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVERELEKAREDIPEYRKQAEDAEDAK 167

Query: 404 IAIIRNEDKPK------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
              ++  D  K       + + R    E+Q      L    + ++E+           A+
Sbjct: 168 TQALKELDSTKRLIEELKLNLERAQTEEHQAKQDSELAKLRVEEMEQGIADEASVAAKAQ 227

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFS---KSTDLGRRRTTFCEVSRADKATLQQAM 514
            E   +   +       +  E+  +++ ++      D+  +R      +  +     + +
Sbjct: 228 LEVAKARHAAAVADLKAVKDELEALRKEYASLVTEKDVAVKRAEQAVSASKEIEKTVEEL 287

Query: 515 IEK 517
             +
Sbjct: 288 TIE 290


>gi|182625182|ref|ZP_02952958.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
 gi|177909641|gb|EDT72075.1| DNA/RNA helicase, SNF2 [Clostridium perfringens D str. JGS1721]
          Length = 1069

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 21/184 (11%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR-REVLFRRSSFRMQAIDRR 386
            +     +   F  N  +     +  +  L   LK    +   +   R    ++      
Sbjct: 310 QLEYYIPIHKLFLKNNTITYKKSLENLRSLLQELKNISKNIVLDENIRVFKEKLMKTTFN 369

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           +   KG +   + ID    II      K     R   +E     I   +L   + ++  +
Sbjct: 370 LYKTKGKIYCNVKIDYCGYIIDLIRDEKDNSFLRDLKSE---KYI-EFQLERFKFIKREE 425

Query: 447 ------IKSELDNLLAE-KEKIDSL----LNSGKQQWNQ-----IACEIREVKEIFSKST 490
                  + E+  L ++  +++  L    L+   +++       I+ E++E+   +    
Sbjct: 426 DFCFIGNEEEMYELFSKGIKRLRELGEVLLSEELKEFKVLDSSLISSELKELSNFYKLKF 485

Query: 491 DLGR 494
           D G 
Sbjct: 486 DFGD 489


>gi|126641234|ref|YP_001084218.1| ATP-dependent protease Hsp 100 [Acinetobacter baumannii ATCC 17978]
          Length = 838

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 219 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 267

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 268 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 325

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 326 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 385

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 386 EALDKLDRRLIQ----LKMQLEAVKKDEDAGSKAEVTHLEKQIAEVEKEYNDLEEVWKAE 441

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 442 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 494


>gi|126311362|ref|XP_001381768.1| PREDICTED: similar to formin binding protein 1-like [Monodelphis
           domestica]
          Length = 587

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 75/275 (27%), Gaps = 36/275 (13%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +E+ A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 53  HTQWGIDFLERYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 104

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG-- 392
               F +      +  +        ++ E + HR      R S  +   +R++ + +G  
Sbjct: 105 CIAFFNI------LNELNDYAGQREVVAEEMGHRVYGELMRYSHDL-KTERKMHLQEGRK 157

Query: 393 ----LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKL 442
               L + +  +D           E +       R     N   A +    + L     +
Sbjct: 158 AQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKADVEKAKQQLNLRTHM 217

Query: 443 EEYQIKSELDNLLAEKEK--------IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +         L     +        I  +    ++   +   ++ E    F+ S     
Sbjct: 218 ADENKNEYAAQLQNFNGEQHKHFYIVIPQIYKHLQEMDERRTIKLSECYRGFADSERKVV 277

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529
              + C +     A           + V     G+
Sbjct: 278 PIISKC-LEGMIHAAKSVDERRDSQMVVDSFKSGF 311


>gi|168209499|ref|ZP_02635124.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
 gi|170712417|gb|EDT24599.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 1067

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 21/184 (11%)

Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR-REVLFRRSSFRMQAIDRR 386
            +     +   F  N  +     +  +  L   LK    +   +   R    ++      
Sbjct: 308 QLEYYIPIHKLFLKNNTITYKKSLENLRSLLEELKNISKNIVLDENVRVFKEKLMKTTFN 367

Query: 387 VEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446
           +   +G +   + ID    II      K     R   +E     I   +L   + ++  +
Sbjct: 368 LYKTEGKIYCNVKIDYCGYIIDLIRDEKDNSFLRDLKSE---KYI-EFQLERFKFIKREE 423

Query: 447 ------IKSELDNLLAE-KEKIDSL----LNSGKQQWNQ-----IACEIREVKEIFSKST 490
                  K E+  L ++  +++  L    L+   +++       I+ E++E+   +    
Sbjct: 424 DFCFIGNKEEMYELFSKGIKRLRELGEVLLSEELKEFKVLDSSLISSELKELSNFYKLKF 483

Query: 491 DLGR 494
           D G 
Sbjct: 484 DFGD 487


>gi|301773262|ref|XP_002922044.1| PREDICTED: ninein-like isoform 2 [Ailuropoda melanoleuca]
          Length = 2045

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 100/329 (30%), Gaps = 35/329 (10%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y       +V      E + +     
Sbjct: 599 NMSIEAELVIEQMKEQHHRDLCRLRLELEDKVHHYEKKLDETKVACEKEQENMKQKYENE 658

Query: 269 VVTEIPYQVQKSRLIEKIAEL------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           V      + Q S L ++IAEL      +   +   +    DE  +  R     K    + 
Sbjct: 659 VHV---LEKQISDLKDEIAELQGQAVVLKEAQHTTICRHEDEKKQLQRKWDEEKTHLQEK 715

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-HRREVLFRRSSF 378
              +  +E    L   E  F      L          +  + +E    H+ ++       
Sbjct: 716 LRLEHELELKASLEQAEESFNREREGLIQNGAWTEEKVRALTQELEQFHQEQLKSLMEKH 775

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA----ILNL 434
            ++  + R E+L+          E +         +     R S  E Q  A    +   
Sbjct: 776 TLEKEELRKELLEKHQRELQEGREKM---------ETECNRRTSQIEAQFQADCQKVTER 826

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI-REVKEIFSKSTDLG 493
              +LR LE      EL  LL ++ +        + QW     E+ +E  E   +  +  
Sbjct: 827 CENALRSLE-GHYHQELKELLEQQLE-------ERSQWEFEKDELTQECAEAQEQLKETL 878

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITV 522
           +R      V   ++  L++   E     V
Sbjct: 879 QREKATSLVLTQEREMLEKTYKEHLNSMV 907


>gi|296242695|ref|YP_003650182.1| hypothetical protein Tagg_0960 [Thermosphaera aggregans DSM 11486]
 gi|296095279|gb|ADG91230.1| hypothetical protein Tagg_0960 [Thermosphaera aggregans DSM 11486]
          Length = 519

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 84/244 (34%), Gaps = 23/244 (9%)

Query: 294 RIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353
           ++  L      +   VR  +   N  +    L++ +  L  MET + + +  +    V  
Sbjct: 121 KLSRLAQDAASARSGVRKEIVELNNVVSDPGLLQGLKPLIGMETNYNIPIIEIPFPSVDH 180

Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--ED 411
                 I K        + +   +  ++ +   +E  K  +      DE + I+    E+
Sbjct: 181 EEVARRISKAMREIDELIEY--VNNVLEKVRDLLEAWKKEITKEY--DEKLRIMDEKIEE 236

Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE---------EYQIKSELDNLLAEKE--- 459
             + V  +   L   + + + +++ R L  +E            +    + L   K    
Sbjct: 237 TKRAVAKAIEELKRKRDEELSSVKERHLPNIESIEKRIVETRENVIRLEEELEKAKAYGK 296

Query: 460 ---KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
               +   LN  K+    +  E+   +  +    D+ R    + E+  A+   ++  + E
Sbjct: 297 DTSDLKKRLNDQKKTLKNLEKELENARASYDD--DVKRIEKKYNELIEAENNKVKSILSE 354

Query: 517 KEPI 520
           ++ +
Sbjct: 355 RDAV 358


>gi|194206587|ref|XP_001918164.1| PREDICTED: similar to tropomyosin 1, alpha [Equus caballus]
          Length = 402

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 73/202 (36%), Gaps = 37/202 (18%)

Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343
           E++A  +   ++   E   DES   ++++     +  +   + E                
Sbjct: 222 ERLATALQ--KLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKE----------- 268

Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
                    + +  D   K     R+ V+       ++  + R E+ +G       ++E 
Sbjct: 269 --------AKHIAEDADRKYEEVARKLVII---ESDLERAEERAELSEGK---CAELEEE 314

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR-KLEEYQIKSELDN-----LLAE 457
           +  + N  K       ++S  E++ +      ++ L  KL+E + ++E        L   
Sbjct: 315 LKTVTNNLKSLEAQAEKYSQKEDKYEE----EIKVLSDKLKEAETRAEFAERSVTKLEKS 370

Query: 458 KEKIDSLLNSGKQQWNQIACEI 479
            + ++  L + K ++  I+ E+
Sbjct: 371 IDDLEDELYAQKLKYKAISEEL 392


>gi|118381947|ref|XP_001024133.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila]
 gi|89305900|gb|EAS03888.1| Viral A-type inclusion protein repeat containing protein [Tetrahymena
            thermophila SB210]
          Length = 2199

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 25/244 (10%)

Query: 279  KSRLIEKIAE--LIIAKRIPLLEDIRDESAE------DVRIVLFPKNRSLDP-------- 322
            K +L + I E   +I +    +    DE  E      +++  +    + +          
Sbjct: 921  KEKLTQSIEEDKKVIEELNKSISQKDDELKEIQQQCVNLKQKIEELEKDVSDKTSEINQL 980

Query: 323  -DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF--RRSSFR 379
             DL+      +   E         +   +      ++ I K             +R+   
Sbjct: 981  NDLIKNHQEKIDQQEDSLQSKEKTIEETKEELKKKIEVIEKLHEQFNETNQTLGQRAQEI 1040

Query: 380  MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439
             Q I+ + +  K L      IDE   II  +++       +      Q    L     ++
Sbjct: 1041 EQIIENKQQKEKELQEKQNKIDEKQKIIEEKEEIIKENEQKLKQANEQ----LEENQNAI 1096

Query: 440  RKLEEYQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
             KL E Q +SE  +  L  + +  + LL S K+       E+ + +E  S+   L     
Sbjct: 1097 NKLSEQQTQSEAEIKQLQEKLKDTEELLASAKENLQNSQKELEQSQESLSQKQKLYDEEH 1156

Query: 498  TFCE 501
               +
Sbjct: 1157 ELVQ 1160


>gi|268535440|ref|XP_002632853.1| Hypothetical protein CBG15049 [Caenorhabditis briggsae]
          Length = 516

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 5/176 (2%)

Query: 310 RIVLFPKNRSLDPDLL-MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368
           RI++    R +D   + +  +  +   E  F L     +      V  +   + E    R
Sbjct: 291 RIIVGLLKRRVDEQSIHLNKLAYMYSREDVFGLGRKPRTDYLDEIVKFMKPRILECFKLR 350

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
                R  +         + I +G     +        +  + K    +  R  L     
Sbjct: 351 TWDDTRVVNSEKYRDQLALAIAEGENEQLI----GGVYLTEQWKKATRLDIRDKLIIKHW 406

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
           +   + +   +  L    +     +L+ ++++  ++L +   +   I  E+  + E
Sbjct: 407 NYFADFKEIRMLSLSPEDVNEAQSDLMDDRKQAYTILVTNSLKLEGIKTELENIGE 462


>gi|221126208|ref|XP_002159032.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 276

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 75/230 (32%), Gaps = 7/230 (3%)

Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319
           E+        V E+  +  + +L ++ A     ++   ++  + E  + +  +   K + 
Sbjct: 34  EIEENEKQQDVDELKIKEMQEQLHQEEAARREKEKQLEIQLYQQEENKMLLEIEDNKKQE 93

Query: 320 -LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL----FR 374
             D   + E    L   E         L +    +      +  E    ++E        
Sbjct: 94  EADELKIKEMQEKLLQEEAAKREKEKQLEIQLNQEEKNKKLLEIEENEKQQEADELKIKE 153

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
                +Q    R E  K L I     +E   ++  E+  K   V    + E Q   +   
Sbjct: 154 MQEQLLQEEAARREKEKQLEIQLNQQEENKKLLEIEENEKQREVDELKIKEMQEQLLQEE 213

Query: 435 RLRSLR--KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
             R  +  +LE    + E + +L E E       + K +  ++  ++ + 
Sbjct: 214 ADRREKEKQLEIQLYQQEENKMLLEIEDNKKQKEADKLKIKEMQEQLLQE 263


>gi|167377921|ref|XP_001734589.1| alpha-actinin [Entamoeba dispar SAW760]
 gi|165903794|gb|EDR29223.1| alpha-actinin, putative [Entamoeba dispar SAW760]
          Length = 502

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 94/259 (36%), Gaps = 25/259 (9%)

Query: 278 QKSRLIEKIAELI---IAKRIPLLEDIRDE--SAEDVRIVLFPKNRSLDPDLLMESIFML 332
            K +   KI  +I   + +++       D   ++     +L     +     + +S    
Sbjct: 127 NKFKTGNKIDNMIWNWVNEKVKGYGLYVDNPSTSFGDGRILLALVDNFMGKEIYQSYQNC 186

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF------------RRSSFRM 380
           S+ E              + ++  +D I+K     R  +L+               +  +
Sbjct: 187 SNEERVKKAIEMAHENMGIEELFSVDEIVKCQTDERAMMLYISLFSQVFKTKEMMENQNI 246

Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT-ENQVDAILNLRLRSL 439
             I+R  E  + +      I+E   +++ +++         +   + Q++     ++   
Sbjct: 247 NYIERERETEEVMKKQQQEIEEKEKLLKQQEQAFEEEKRLMNCNLQEQME---QQKIEHQ 303

Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499
           ++LE  + + E   L  EK +  + L   ++Q  Q+  E +E+KE   +      R    
Sbjct: 304 KELERMRQEQERMKLEQEKFR-QAQLKEMEEQKQQMIKEQQEMKEKQEQEK---LRMQQE 359

Query: 500 CEVSRADKATLQQAMIEKE 518
            E ++      ++ MIE++
Sbjct: 360 LEYNQKMMEEQKRRMIEEQ 378


>gi|148985142|ref|ZP_01818381.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922587|gb|EDK73705.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 1179

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
              T    +  +    KA+ L   NL     +   +AI+ L  +N   
Sbjct: 937 SQLTDQYQISYTEALEKAHELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|1050297|gb|AAA80458.1| product p150Glued [Neurospora crassa]
          Length = 1300

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 29/285 (10%)

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +   ++  R    + +   P Q +   L  ++ E     R+  +E+++ E    + + 
Sbjct: 290 KVKAERDKFERIIQTLQIKYQPQQQEIQDLKRQLKEA--ENRLYNVEELQAEHDTAMELA 347

Query: 313 LFPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
              +  + +  ++L   +  L        L + VL          +    +        +
Sbjct: 348 TLDREMAEETAEVLKVELDALKQKNEELELEVEVLREENSEFTNGMSPEERAST---GWL 404

Query: 372 LFRRSSFRMQAIDRRV---------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
              R++ R++    R+         E+   +     ++ E   I       K  +    +
Sbjct: 405 QMERNNERLREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEA 464

Query: 423 LTENQVDAI-----LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + E+  + +         + SL + +      E+  L A  + ++SL         +I  
Sbjct: 465 IVEDLREQLNNALGAEEIIESLTE-QTMNQSEEIKELRAVIDDLESL--------KEIND 515

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           E+        K               +  +A LQ+  +E    T+
Sbjct: 516 ELEINHVQNEKEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTL 560


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 25/198 (12%)

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIF---MLSDMETRFPLNMNV-------LSMGRVPQ 353
           E+A    +   PK  ++D + +  ++     LS ++  +     +       + +  + +
Sbjct: 10  ENACKELMEKDPKFIAIDTEFIRNNLTYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKK 69

Query: 354 VMPLDGILKEWLAHRREVLFRRS--------SFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +M   GI+K + + R+++    +         F  Q            +     +++   
Sbjct: 70  MMLNQGIIKVFHSCRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 406 IIRNEDKPKPVMVSRFSLTENQVD-AILNL----RLRSL--RKLEEYQIKSELDNLLAEK 458
           I  ++ K K     R  L+E+Q+D AI ++     L  +   KLEE    S     +   
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESNRMSWFQEEMELL 189

Query: 459 EKIDSLLNSGKQQWNQIA 476
             I+  L+S K  W +I 
Sbjct: 190 VDINKYLHSPKDAWRRIK 207


>gi|193216053|ref|YP_001997252.1| CheA signal transduction histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089530|gb|ACF14805.1| CheA signal transduction histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 2433

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 114/385 (29%), Gaps = 39/385 (10%)

Query: 191  IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250
             P     EI       ++     +EKL E ++  D  +G +  +    ++ S    +G  
Sbjct: 1332 TPKFEPDEIQA---IFLEEAYEYLEKLNEDLLELDKTSGTLQPDLINGVLRSSHTLKGSA 1388

Query: 251  RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310
             +     + E+G      +      QV + + ++   EL+      LL    D     ++
Sbjct: 1389 AMVQLHHISELGHKMEDAL------QVVRDKNLKTPPELV-----DLLFHAVDAITAMIK 1437

Query: 311  IVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369
                      D  + ++E++   +          +  S  R          L+E   +  
Sbjct: 1438 HFRETGKDDNDKCEAIIETLVDYTQQLETKGEITSASSKSRFEPDEIQQAFLEEAEEYLE 1497

Query: 370  EVLFRRSSFR----------MQAIDRRVEILKG--LLIAYLNIDEIIAIIRNE-----DK 412
             +                  +  + R    +KG   ++   NI E+   + +      DK
Sbjct: 1498 NLNIDLLQLDKLFGTEQPEIIHRVLRSAHTIKGSAAMVQLRNISELAHKMEDSLQIVRDK 1557

Query: 413  PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
               V           VDAI  +     +K  E         L+    + +  L    +  
Sbjct: 1558 NLKVPRLLVDTLFQSVDAITEMT-NHFKKTGEDS-NEHTKELIDTLAEYEKQLADTGEIK 1615

Query: 473  NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI---SNRGW 529
                  + +  EI     +          V   D       +       V+    + +G 
Sbjct: 1616 AIAKKGLFKPNEIQQVFLEEASEFIDKLNVDLLDLDKAAGTIQPDLVNRVMREAHTLKGS 1675

Query: 530  IRSLKSHSVDLSALHFKEGDSLKIA 554
               ++ H  ++S L  K  DSL+  
Sbjct: 1676 AAMVQLH--NISELAHKMEDSLQFV 1698


>gi|118094352|ref|XP_422335.2| PREDICTED: similar to transducer of Cdc42-dependent actin
           assembly-1 [Gallus gallus]
          Length = 562

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 75/265 (28%), Gaps = 40/265 (15%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           +       +EK A+ +  +    +E    +   ++     PK  S D +         + 
Sbjct: 32  HTQWGIDFLEKYAKFVKER--IEIEQNYAKQLRNLVKKYCPKRSSKDEEP------RFTS 83

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG-- 392
               F +      +  +        ++ E + HR      R S  +   +R++ + +G  
Sbjct: 84  CIAFFNI------LNELNDYAGQREVVAEEMGHRVYGELMRYSHDL-KTERKMHLQEGRK 136

Query: 393 ----LLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSL---RKL 442
               L + +  +D           E +       R     N   A +    + L     +
Sbjct: 137 AQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKADVEKAKQQLNLRTHM 196

Query: 443 EEYQIKSELDNLLAEKEK--------IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
            +         L     +        I  +    ++   +   ++ E  + F+       
Sbjct: 197 ADENKNEYAAQLQNFNGEQHKHYYIVIPQIYKQLQEMDERRTIKLSECYKGFAD-----S 251

Query: 495 RRTTFCEVSRADKATLQQAMIEKEP 519
            R     +S+  +  +  A    E 
Sbjct: 252 ERKVIPIISKCLEGMILAAKSVDEH 276


>gi|312380842|gb|EFR26731.1| hypothetical protein AND_06990 [Anopheles darlingi]
          Length = 1000

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 25/231 (10%)

Query: 286 IAELIIAKRIPLLE-----DIRDESAEDVRIVLFPKNRSLDP-----DLLMESIFMLSDM 335
           ++E +       +      D   +S   +R  L   +R L       D +     +    
Sbjct: 293 LSEQLNDAFKENIAKDNELDRYRDSNLQLRCQLAEMSRELGELRELSDTINMRQELTKQR 352

Query: 336 ETRFPLNMNVLSMGR------VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389
            + F L  N +   +        +++     L +    R +         ++   +R + 
Sbjct: 353 SSYFSLLKNDVQQMQDQLNGVRSEIVSRQQDLGQLSFFREKCAEMERIHEVELCQQRTKH 412

Query: 390 LKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIK 448
              L      I+ +   + N  D  K    +   L   Q   I+ L            ++
Sbjct: 413 SNELKELRREIEHLSNQLANSMDSSKQHEQTVEELATLQAT-IVEL------GEHNKVLE 465

Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI-FSKSTDLGRRRTT 498
             + +      +++  L S + Q + +  E+ E++     +   +G  RT 
Sbjct: 466 KTIQSYQDSIVQLEQQLGSSEHQLSIMKQELDELRARCTGQENKIGSLRTE 516


>gi|300870371|ref|YP_003785242.1| flagellar hook-length control protein FliK [Brachyspira pilosicoli
           95/1000]
 gi|300688070|gb|ADK30741.1| flagellar hook-length control protein, FliK [Brachyspira pilosicoli
           95/1000]
          Length = 504

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 71/241 (29%), Gaps = 15/241 (6%)

Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES-IFMLSDMETRFPLNMNVLSM 348
           I A     + DI D+++    +     +  +         I    D +     N N+   
Sbjct: 16  ISANNNNTIYDIHDDNSFAKMLDEAKNSEDIYSQSATNKSIEKEEDYQDSLYKNNNITDE 75

Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI-- 406
                V   + I KE + +  +             + + EI +       NI+    I  
Sbjct: 76  DPQNNVENSENIRKENIENNADEAQSSELKESVNNEEKEEISENNSKEDKNIENAENIDN 135

Query: 407 ------IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                 I +  +    ++ +  L      A    ++     ++    + +L +L+ + + 
Sbjct: 136 NEIKKDIMSSKEKAKKLIDKAGLIIENYKADKKAQIEKNVNIDSKVNEEKLSSLIKDIDD 195

Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520
           I       ++  N    E+ E  +       +         +S  +     + + +   +
Sbjct: 196 IK------EELKNINLEELDEKDKKEITDLIIALESLEEIAISYQNDDDNVEKLSDIFEL 249

Query: 521 T 521
            
Sbjct: 250 V 250


>gi|242015388|ref|XP_002428341.1| Rootletin, putative [Pediculus humanus corporis]
 gi|212512937|gb|EEB15603.1| Rootletin, putative [Pediculus humanus corporis]
          Length = 1900

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 13/241 (5%)

Query: 288 ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
           E+++++++     +     E   I    +   L+   + ES+    ++        N L 
Sbjct: 538 EMLLSQKMESQSLLAQLEKEKNNIEQELEKTLLEKSDIQESLDKYENLGCNLEQEKNRLQ 597

Query: 348 MGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-----ILKGLLIAYLNIDE 402
                       +  +    + +++  R    +QA   R+E     + +   I YL I++
Sbjct: 598 DQIRKLEEEKRNLKSQMADQQSDIMSLRKE-LLQAEQIRLELESDRVSQKEKIKYLEIEK 656

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAIL----NLRLR-SLRKLEEYQ--IKSELDNLL 455
               I+ E   +     +  L+       L     +RLR  L ++ E    I   L+ L+
Sbjct: 657 EKIEIQLESITRENAEIKNDLSSLSRKRELLNEETMRLRQRLEQVTETNSRINRNLEELM 716

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515
            E E+   LL S +++  +I  +I  ++        +     T  E S   K  L++   
Sbjct: 717 KENEEKQILLESNEKEIQRIQEQIASIRSEKEALEAVLFDTQTNLEASEIKKLQLEKDNQ 776

Query: 516 E 516
           E
Sbjct: 777 E 777


>gi|332158870|ref|YP_004424149.1| hypothetical protein PNA2_1230 [Pyrococcus sp. NA2]
 gi|331034333|gb|AEC52145.1| hypothetical protein PNA2_1230 [Pyrococcus sp. NA2]
          Length = 611

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342
           + +I   I     P++    D S     +    ++      +  ES+ +    E    L 
Sbjct: 224 LSEIVRFISDIGHPVI-IATDVSPPPGLVEKIARSFKAQLFVPRESLKVEEKNELLRNLG 282

Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402
           + V    +   +         +      +  R   F +      +   K L+++  ++ E
Sbjct: 283 ITVDDDHQRDALAAAYKAYLRYKPKFEHIEARLKEFGLWKKRNEI---KALVLSGYSLGE 339

Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
            I  I+++++ +   VS     E  +   L             +++ E+  L  E  ++ 
Sbjct: 340 AIMKIKSQERQREEEVSTEKKVEVDIKPYLK---------RIEELEKEVAELERENAELK 390

Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
           +++   ++   ++   + E  E         R      E     +  L++   + E
Sbjct: 391 AIIEEQRKIIEKLERRLEEFDEKVRFKVLKEREIRARDERIAMLEQKLREEKRKVE 446


>gi|327269108|ref|XP_003219337.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Anolis
            carolinensis]
          Length = 4302

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 336  ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
            ++ F  +  ++     P        +     +R     +R+      I R+  +  G+  
Sbjct: 2842 DSEFLKSFLIIHESCKPHGATPRRYMTFLHMYRAIHNSKRTEL----IKRQSHLQAGVAK 2897

Query: 396  AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN-----LRLRSLRKLEEYQIKSE 450
                ++E  A++   ++          + +++ DA L      ++  S +K E  +IK +
Sbjct: 2898 ----LNEAKALVDELNRKAEEQSVLLKMKQDEADAALQEITVSMQNASEQKSEMEKIKQK 2953

Query: 451  LDNLLAEKEKIDSLLNSGKQQWNQIACE 478
            +   + + E+   ++    ++   +  E
Sbjct: 2954 IAQEVVKIEERKGIIEDELREVQPLVNE 2981


>gi|297664542|ref|XP_002810698.1| PREDICTED: outer dense fiber protein 2-like isoform 3 [Pongo
           abelii]
          Length = 620

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 89/242 (36%), Gaps = 32/242 (13%)

Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325
             IV+ +   +VQ   + ++I  L+   +   +ED    S E++   +       +   L
Sbjct: 289 EKIVIEKTELEVQIETMKKQIVNLLDDLKK--MEDHGKNSCEEILRKVHSIEYENEILNL 346

Query: 326 ME-SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI------------------LKEWLA 366
               + +          NMN+L++  +   +  +                    L+E   
Sbjct: 347 ENTKLKLRFPCRITESKNMNILNVLDMLCYISSEKTTLAALKDEVVSVENELLELQEVEK 406

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP--VMVSRFSLT 424
            ++ +       ++Q +    EI+KG     L+ +  I   +N++  K          L+
Sbjct: 407 KQKTL-IEMYKTQVQKLQEAAEIVKGRCENLLHKNNQITKTKNKNVEKVDGNHNLLTKLS 465

Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
             + + ++ L+           ++ +L+ + AE ++++  L + ++       +++E   
Sbjct: 466 LEEENYLIQLKC--------ENLQQKLEQMDAENKELEKKLANQEECLKHSNLKLKEKSA 517

Query: 485 IF 486
            +
Sbjct: 518 EY 519


>gi|332030759|gb|EGI70435.1| Kinesin-like protein KIF20A [Acromyrmex echinatior]
          Length = 1468

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 102/342 (29%), Gaps = 34/342 (9%)

Query: 231  IIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI 290
                S ++I+E Y+      + +    VEE  +    +  T++ Y+ + +    KI +L 
Sbjct: 1014 EENCSNKTIIEEYKNSTEELKKQLTLAVEEKQKIEEILQNTDMAYKQKIASYECKIDQLE 1073

Query: 291  IA---------KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341
                       + +  L+    E    +      K  ++     + S+    +      +
Sbjct: 1074 KNLSIAKDDTQQYLEKLKTAEKELDNYMLKCKEEKEINVCKSDELVSVKEEDNNTNNISI 1133

Query: 342  NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401
            N     + ++ Q+      +++               ++       +I K  +   L+ +
Sbjct: 1134 NQLDEYVEKISQLENNLKTIEKLKC---------DIDQLNKNLETCQIEKNYIQETLDEN 1184

Query: 402  EIIAIIRNEDKPKPVMVSRFSLTENQV-DAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460
                +       +  +  +   TE       L   ++ +   E      E   L     +
Sbjct: 1185 NKKLLKLESQLEETTLKEQEKDTEITTLQKELKCMIQKIENTERTDNVME-AELKCAINE 1243

Query: 461  IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM-IEKEP 519
            +     +  ++   I  E++   E F K+  +        E +  D     + +      
Sbjct: 1244 LTQTKETLFEKEQYIK-ELKIHLENFEKNAKIFD----LLEQNAKDWQIENERLRNTNND 1298

Query: 520  ITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561
            + + ++        K H +D   +  ++    K         
Sbjct: 1299 LRISLT-------QKEHEMDAF-MKNRDETVTKYETLVKNHQ 1332


>gi|151941941|gb|EDN60297.1| essential protein involved in intracellular protein transport
            [Saccharomyces cerevisiae YJM789]
          Length = 1796

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 19/241 (7%)

Query: 259  EEVGRGSWCIVVTEIPYQVQKSRLIEKIA------ELIIAKRIPLLEDIRDESAEDVRIV 312
            E           + + +Q +   L E IA      + I      +     + S E   I 
Sbjct: 881  ENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEKMKIQCNNLSKEKEHIS 940

Query: 313  LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
                            +  L++       N   +       +  ++    E       + 
Sbjct: 941  KELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ 1000

Query: 373  FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA-- 430
             +  S   +      +I +G +    NI+++   I + ++ K  ++S+   ++++ ++  
Sbjct: 1001 NKIDSMSQEK--ENFQIERGSIE--KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 431  -ILNLRLRSLRKLEEYQ------IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483
             +L  +L +     +        +    + L AE     +L N  + +       ++EVK
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 484  E 484
            E
Sbjct: 1117 E 1117


>gi|121699507|ref|XP_001268043.1| hypothetical protein ACLA_083120 [Aspergillus clavatus NRRL 1]
 gi|119396185|gb|EAW06617.1| hypothetical protein ACLA_083120 [Aspergillus clavatus NRRL 1]
          Length = 1090

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
           R  +  R   R +   +  ++L+    A  ++DE+   +                 + ++
Sbjct: 500 RASVISRDQTRARFEQQIHKLLREKAEAEKDMDELKQQLSEARTSIVEGADEAKRRQGEL 559

Query: 429 DAILNLRLRSLRKLEEYQIKS--ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
           +A+L  R R ++ LE+ +++    L+    E + +     S   +   +A E+ E ++  
Sbjct: 560 EAMLLTRERHIQSLEDSRVQDAVRLNEQKEEIKLLHQSEASAAVKHGSLAQELDEARKKV 619

Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
            +   +   R    E  ++   + Q A+++KE 
Sbjct: 620 VELNGVISSRDIEVENQQSKLDSFQDALLKKED 652


>gi|262279691|ref|ZP_06057476.1| ATP-dependent chaperone ClpB [Acinetobacter calcoaceticus RUH2202]
 gi|262260042|gb|EEY78775.1| ATP-dependent chaperone ClpB [Acinetobacter calcoaceticus RUH2202]
          Length = 859

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDVGSKAEVTHLEKQIAEVEKEYNDLEEIWKSE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|255261922|ref|ZP_05341264.1| hydrophobic amino acid ABC transporter [Thalassiobium sp. R2A62]
 gi|255104257|gb|EET46931.1| hydrophobic amino acid ABC transporter [Thalassiobium sp. R2A62]
          Length = 316

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659
            DI    +  +   L+   +    F+V  S I+  TR GK    VS    +  V  +  D
Sbjct: 149 DDIGAILLIPNKHLLIFAGT--IVFVVVLSYILNRTRIGKAMRAVSDSPDLAHVTGIDVD 206

Query: 660 HVAVVG 665
            V    
Sbjct: 207 QVIRAT 212


>gi|226325297|ref|ZP_03800815.1| hypothetical protein COPCOM_03089 [Coprococcus comes ATCC 27758]
 gi|225206645|gb|EEG88999.1| hypothetical protein COPCOM_03089 [Coprococcus comes ATCC 27758]
          Length = 866

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 36/213 (16%)

Query: 441 KLEEYQIKSELDNLLAEKEKID---SLLNSG-----KQQWNQIACEIREVKEIFSKSTDL 492
           K E   + +ELD L  +  +++   + L        K++  ++  E+ E +E F+K    
Sbjct: 401 KTELDSMPTELDELNRKIMQLEIEEAALKKEDDRLSKERLQKLQEELAEEREKFAKQKAQ 460

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKE-----PITVVISNRGWIR-SLKSHSVDLSALHFK 546
                   E  +  +  ++Q   E E           +   + R       ++      K
Sbjct: 461 WDNEKHSVEHVQKIREQIEQLNREIEAAQRSYDLNKAAELQYGRLPQLQKQLEEEEAKVK 520

Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606
           + D     +H   TD  +               ++S R  G  +     LN ++   T  
Sbjct: 521 DED--LSLVHESVTDDEI-------------AKIIS-RWTGIPVA---KLNESERSKTLH 561

Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639
           + D   K ++   +G   + + ++ I  ++ G 
Sbjct: 562 LADELHKRVIGQDEG---VTKVTDAIIRSKAGI 591


>gi|117650073|gb|ABK54038.1| paramyosin [Chorioptes texanus]
          Length = 875

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 18/254 (7%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
             + L +++A+ +   R  L E+ R  ++ +                L E      ++E 
Sbjct: 224 NANHLKQQVAQQLEDTRHRLEEEERKRASLENHAHTLEVELESLKVQLDEESEARLELER 283

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
           +        +  +      L     E    RR++  + S +  + ++  +     L    
Sbjct: 284 QLTKANGDAASWKSKYEAELQAHADEVEELRRKMAQKISEYE-EQLEALLNKCSSLEKQK 342

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI-LNLRLRSLRKLEEYQIKSEL--DNL 454
             +   + ++  + +       +      Q++ I L+L+     KLEE  +  E     L
Sbjct: 343 SRLQSEVEVLIMDLEKATAHAQQLEKRVAQLEKINLDLK----NKLEEVTMLMEQAQKEL 398

Query: 455 LAEKEKIDSLLNSGKQQWNQ----------IACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +  ++  L +  ++  +Q          +  ++ E K   + +    R++    +   
Sbjct: 399 RVKIAELQKLQHEYEKMRDQRDQLARENKKLTDDLAECKSQLNDAHRRIRKQEIEIKRLE 458

Query: 505 ADKATLQQAMIEKE 518
            ++  L  A  E E
Sbjct: 459 NERDELSAAYKEAE 472


>gi|291237537|ref|XP_002738691.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 1393

 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 85/265 (32%), Gaps = 27/265 (10%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
           +S+   KI +L    ++  L D  D++A +  +            + +  +   +  +  
Sbjct: 610 RSKTATKIDDL--TTQLKSLNDKYDKTALEFELCKTELLNMQKQKIDLSEVHEQTKHQLH 667

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS-------------SFRMQAIDR 385
             +N        V         LKE   H  ++   R+              F+++ +++
Sbjct: 668 SVINEKSNLASVVEGKSKDIERLKEEKDHYFKLFEERNIELCDIRTGKEKLQFQLEELEK 727

Query: 386 RVEILKGLLIAYLNIDEIIAI-----------IRNEDKPKPVMVSRFSLTENQVDAILNL 434
           ++  L+        + E+              I      K   +     +++     L +
Sbjct: 728 KLTALREQNANMSQMIEMSNKTSQDCKVERDRIEAMLSEKQTEMDELKKSKDDTSRKLKI 787

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494
           R + L  LEE + +  +  L  + +++  +     +  +++     EV  +   +  L  
Sbjct: 788 REKRLLGLEEER-EKMMHELENKLKELAEVTGQKDEMLSELKQSRYEVAALTKDNDHLKD 846

Query: 495 RRTTFCEVSRADKATLQQAMIEKEP 519
                   S  ++  +   +   E 
Sbjct: 847 SLDQVHSSSEKERKMMVNRLHSLEH 871


>gi|18376073|emb|CAD21101.1| DYNACTIN (150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE) ro-3 [Neurospora
           crassa]
          Length = 1300

 Score = 37.8 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 29/285 (10%)

Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
           + +   ++  R    + +   P Q +   L  ++ E     R+  +E+++ E    + + 
Sbjct: 290 KVKAERDKFERIIQTLQIKYQPQQQEIQDLKRQLKEA--ENRLYNVEELQAEHDTAMELA 347

Query: 313 LFPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371
              +  + +  ++L   +  L        L + VL          +    +        +
Sbjct: 348 TLDREMAEETAEVLKVELDALKQKNEELELEVEVLREENSEFTNGMSPEERAST---GWL 404

Query: 372 LFRRSSFRMQAIDRRV---------EILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422
              R++ R++    R+         E+   +     ++ E   I       K  +    +
Sbjct: 405 QMERNNERLREALIRLRDITQQQEEELKDQIKSMEEDLREFETIKEQHTTAKEKLAQTEA 464

Query: 423 LTENQVDAI-----LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
           + E+  + +         + SL + +      E+  L A  + ++SL         +I  
Sbjct: 465 IVEDLREQLNNALGAEEIIESLTE-QTMNQSEEIKELRAVIDDLESL--------KEIND 515

Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           E+        K               +  +A LQ+  +E    T+
Sbjct: 516 ELEINHVQNEKEMQEEIDLKDSIIAEQFRQANLQRESLEDMEYTL 560


>gi|330882298|gb|EGH16447.1| relaxase/mobilization nuclease MobA, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 589

 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 13/205 (6%)

Query: 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-------RIVLFPKNRSLDPD 323
           TE  Y      + EK++ELI ++ I   +         +        +V++   R   P 
Sbjct: 241 TESLYHYAVREVREKLSELIKSREITWRKIHLALHERGLGLREQGEGLVIYDFLRPEGP- 299

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRV--PQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381
           ++  S    +  + R   ++           +            A        R   R  
Sbjct: 300 VVKASSVHPTLTKFRLEAHIGAFEGPPTFEHEEWSYGIFSTYQPAFELRDKDVRFDRRQA 359

Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--RFSLTENQVDAILNLRLRSL 439
             + R+++           ++    +++  +         +  +  +Q D +L   L  +
Sbjct: 360 RAEARLDLKMRYKRYREGWEKPDLHVKDRYQQVAARYQAMKADVKRSQHDPLLRKLLYRV 419

Query: 440 RKLEEYQIKSELD-NLLAEKEKIDS 463
            + +  +  +EL   L  E++++  
Sbjct: 420 AEFDRMKAMAELRIELREERQELAE 444


>gi|224053659|ref|XP_002189101.1| PREDICTED: similar to 6330417G02Rik protein, partial [Taeniopygia
           guttata]
          Length = 356

 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 75/191 (39%), Gaps = 10/191 (5%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM-VSRFSLTENQVDAILN 433
           +  F ++ I  + EI + L  A   ++E + ++   DK K     S + L + ++  I  
Sbjct: 144 KKGFEVEKIKMQQEISE-LKGAKKQVEEALTMVIQADKMKAAEIRSVYHLHQEEITRIKR 202

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE-------IREVKEIF 486
              R +R+LE+   + +      +  ++  ++   + +   ++ E       +RE +  +
Sbjct: 203 ECEREIRRLEQQLDEKDARRFQLKIAELSGIIRKLEDRNALLSEERNELLKRLREAESQY 262

Query: 487 SKSTDLGRR-RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545
               D  +R      E+S A +    +     +    +    G IR   S +    +   
Sbjct: 263 KPILDKNKRLSRKNEELSHALRRMENKLKFVTQENIAMRQRTGVIRRPSSLNDLDHSQEE 322

Query: 546 KEGDSLKIALH 556
           +E D L++ + 
Sbjct: 323 REVDFLRLQVI 333


>gi|91215359|ref|ZP_01252330.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
 gi|91186311|gb|EAS72683.1| hypothetical protein P700755_09603 [Psychroflexus torquis ATCC
           700755]
          Length = 1138

 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 15/175 (8%)

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393
                F                 L    K+     ++        R++   +++E  + L
Sbjct: 540 QKLDNFIKRQKQRMEMMKNYSERLKEDFKKLNPEEQDKAKENLEDRLEKNQKQIEKNQEL 599

Query: 394 LIAYLNIDEIIAIIRNEDKPK--PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451
           L      DE+   I  E+  +            E  ++ +L L  R   + +  ++  EL
Sbjct: 600 LKEL---DELRDKIDREELNQKLENFDKESKKQEKNLEQLLELTKRFYVEKKTEKLAEEL 656

Query: 452 DNLLAEKEKI----------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496
            NL  E+E +             LN    +  +   E+ E  E      D+G  +
Sbjct: 657 KNLAREQEDLSEAEENTSEEQEKLNEKFDKLKEDLKELEEKNEDLKAPMDIGSDK 711


>gi|83032900|ref|XP_729240.1| cytoplasmic dynein 1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23486495|gb|EAA20805.1| cytoplasmic dynein 1-related [Plasmodium yoelii yoelii]
          Length = 5054

 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 13/152 (8%)

Query: 340  PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399
             +N  ++  G     M     L       + +  +R     Q       +  GL     +
Sbjct: 3413 HINQVLMKKGSKYNYMTPRDFLDFIKHFLKIIDEKREEISAQKK----HLNAGLKK-LKD 3467

Query: 400  IDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459
             +  +A +RN    K        L E  ++A   ++L   ++ E    K + + L  + +
Sbjct: 3468 TEVQVAELRNSLANKKKT-----LAEKDIEAEEKMKLMIEQQAETEDKKKKAEILAKKLD 3522

Query: 460  KIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
            +   ++   +Q+   I  E+ EV+  F ++ D
Sbjct: 3523 EQFIII---EQRKEIIRKELSEVEPKFREAED 3551


>gi|229017313|ref|ZP_04174217.1| hypothetical protein bcere0030_18680 [Bacillus cereus AH1273]
 gi|229023490|ref|ZP_04179986.1| hypothetical protein bcere0029_18250 [Bacillus cereus AH1272]
 gi|228737758|gb|EEL88258.1| hypothetical protein bcere0029_18250 [Bacillus cereus AH1272]
 gi|228744014|gb|EEL94112.1| hypothetical protein bcere0030_18680 [Bacillus cereus AH1273]
          Length = 223

 Score = 37.8 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%)

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443
           +    + K +  A  N+DE   +++N  +         +  ++ ++ + + +L+   K  
Sbjct: 75  EHNEAVSKKIEQATANVDEREKVLKNSKEQLEKAQKETTSVQSNIEKLEDKKLQKQAKTV 134

Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
           E   KS  D      E     L + K+ + ++  +  ++KEI  K
Sbjct: 135 EESYKSRYDAFQKMNENYTKALATEKELYEKLKVKETKLKEIGEK 179


>gi|301773260|ref|XP_002922043.1| PREDICTED: ninein-like isoform 1 [Ailuropoda melanoleuca]
 gi|281343431|gb|EFB19015.1| hypothetical protein PANDA_010984 [Ailuropoda melanoleuca]
          Length = 2132

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 100/329 (30%), Gaps = 35/329 (10%)

Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268
           N  I  E ++E +          +    E  V  Y       +V      E + +     
Sbjct: 599 NMSIEAELVIEQMKEQHHRDLCRLRLELEDKVHHYEKKLDETKVACEKEQENMKQKYENE 658

Query: 269 VVTEIPYQVQKSRLIEKIAEL------IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           V      + Q S L ++IAEL      +   +   +    DE  +  R     K    + 
Sbjct: 659 VHV---LEKQISDLKDEIAELQGQAVVLKEAQHTTICRHEDEKKQLQRKWDEEKTHLQEK 715

Query: 323 ---DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA-HRREVLFRRSSF 378
              +  +E    L   E  F      L          +  + +E    H+ ++       
Sbjct: 716 LRLEHELELKASLEQAEESFNREREGLIQNGAWTEEKVRALTQELEQFHQEQLKSLMEKH 775

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA----ILNL 434
            ++  + R E+L+          E +         +     R S  E Q  A    +   
Sbjct: 776 TLEKEELRKELLEKHQRELQEGREKM---------ETECNRRTSQIEAQFQADCQKVTER 826

Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI-REVKEIFSKSTDLG 493
              +LR LE      EL  LL ++ +        + QW     E+ +E  E   +  +  
Sbjct: 827 CENALRSLE-GHYHQELKELLEQQLE-------ERSQWEFEKDELTQECAEAQEQLKETL 878

Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITV 522
           +R      V   ++  L++   E     V
Sbjct: 879 QREKATSLVLTQEREMLEKTYKEHLNSMV 907


>gi|148235586|ref|NP_001086503.1| coiled-coil domain-containing protein 102A [Xenopus laevis]
 gi|82182907|sp|Q6DFL0|C102A_XENLA RecName: Full=Coiled-coil domain-containing protein 102A
 gi|49899027|gb|AAH76726.1| MGC81254 protein [Xenopus laevis]
          Length = 524

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 82/258 (31%), Gaps = 26/258 (10%)

Query: 285 KIAELIIAKRIPLLEDIRD-ESAEDVRIVLFPKNRS-----------LDPDLLMESIFML 332
            I E +    I  L   +D +    VR+  +                 D     +    +
Sbjct: 169 DIEEPVRDVEIEKLTKNKDSDLDNSVRLECWEIQNGGPSRSPRPRNWEDVSPSEDDTTKI 228

Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           + ++ R   +  VL   R  +++    I K          ++     +    +       
Sbjct: 229 TALKLRLDESQKVLLKEREDKMLLNKTIEKMEAE---ISQWKMKCEELNKSRQEAVKQLT 285

Query: 393 LLIAYLNIDEIIAIIRNEDKP--------KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           LL    + DE+  I  +            K +   R  +   Q +       R   + E+
Sbjct: 286 LLRE-RHQDELGRISEDLQDELGVRSSMDKKLAELRAEMEGLQAENAEEWGRRERLETEK 344

Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQ-WNQIACEIRE-VKEIFSKSTDLGRRRTTFCEV 502
             ++ E   L  + + ++ +L   ++Q  + +  +++    E+F K+ +L   R +  ++
Sbjct: 345 LNLERENKKLRLQIQDLEEILTRKRRQSASALDTDLKSIQAELFEKNKELSDLRHSHSKL 404

Query: 503 SRADKATLQQAMIEKEPI 520
            +       +       +
Sbjct: 405 KKQYHERSSEFSHANRRV 422


>gi|146318076|ref|YP_001197788.1| hypothetical protein SSU05_0421 [Streptococcus suis 05ZYH33]
 gi|146320255|ref|YP_001199966.1| hypothetical protein SSU98_0408 [Streptococcus suis 98HAH33]
 gi|253751269|ref|YP_003024410.1| phosphohydrolase [Streptococcus suis SC84]
 gi|253753170|ref|YP_003026310.1| phosphohydrolase [Streptococcus suis P1/7]
 gi|253754993|ref|YP_003028133.1| phosphohydrolase [Streptococcus suis BM407]
 gi|205831664|sp|A4VZM7|CNPD_STRS2 RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiesterase
 gi|205831666|sp|A4VTE9|CNPD_STRSY RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiesterase
 gi|145688882|gb|ABP89388.1| Predicted HD superfamily hydrolase [Streptococcus suis 05ZYH33]
 gi|145691061|gb|ABP91566.1| Predicted HD superfamily hydrolase [Streptococcus suis 98HAH33]
 gi|251815558|emb|CAZ51141.1| putative phosphohydrolase [Streptococcus suis SC84]
 gi|251817457|emb|CAZ55198.1| putative phosphohydrolase [Streptococcus suis BM407]
 gi|251819415|emb|CAR44882.1| putative phosphohydrolase [Streptococcus suis P1/7]
 gi|292557838|gb|ADE30839.1| HdiG [Streptococcus suis GZ1]
 gi|319757549|gb|ADV69491.1| hypothetical protein SSUJS14_0388 [Streptococcus suis JS14]
          Length = 537

 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%)

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +    +     E Q + IL    R  + L++  +    +     +E+I     S +Q+ 
Sbjct: 42  AEQEASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQEL 101

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
            QI   + E      +  D    +    E          + + E+E   V +
Sbjct: 102 KQIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKL 153


>gi|291278627|ref|YP_003495462.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
 gi|290753329|dbj|BAI79706.1| ATP-dependent Lon protease [Deferribacter desulfuricans SSM1]
          Length = 772

 Score = 37.8 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 79/208 (37%), Gaps = 14/208 (6%)

Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338
               I+ + E +   ++  +  I DE  E V + +      +  D  + +    + +   
Sbjct: 80  PDNTIKILVEGVKRGKV--INFIDDE--ETVFVEIEELEDIITTDEHLHNPLKET-LLKT 134

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
           F   + V           L  I          ++      R+  +   +EI   +  A  
Sbjct: 135 FEEYIKVSKKVPAEVYETLKDISSLNKI--TYLIASNLQIRLNDLQTVLEIDSVVERAEK 192

Query: 399 NIDEIIAIIRNED-KPKPVMVSRFSLTENQVDAILNLRLRSLRKL--EEYQIKSELDNLL 455
            I+ +   I       +     +  +++ Q +  LN ++++++K    E  +K++++ + 
Sbjct: 193 LIELLQTEIEIAKIDERIKHRVKAQMSKAQREYYLNEQIKAIQKELGREDDLKADIEEIE 252

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVK 483
           A+  +++      ++   + A E+R++K
Sbjct: 253 AKINELEM----PEEVKEKAARELRKLK 276


>gi|126660443|ref|ZP_01731552.1| hypothetical protein CY0110_23031 [Cyanothece sp. CCY0110]
 gi|126618256|gb|EAZ89016.1| hypothetical protein CY0110_23031 [Cyanothece sp. CCY0110]
          Length = 486

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 303 DESAEDVRIVLFPKNR-SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
           DE  + +RI      R  +D + + + +    + +      +   +             L
Sbjct: 79  DEIQKQLRIAKADLERLGIDKEDIEKELQKAKEEQKTVEKKLQSTNENFNQ----AKQQL 134

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421
           K       ++     S   +    R   ++        +D+ I  ++ E   +   + + 
Sbjct: 135 KAVSNQAVQLKADIQSLLNERKQLRQNKIE--------LDQEIQQLKQEVSQRDEELKKG 186

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQ--IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
                Q   ILN R + L+ LEE Q  +++E+D    E  ++D  +N       +   ++
Sbjct: 187 KAQIAQQTQILNERQQRLQSLEEQQSTLQAEIDRRDEEITQLDQAINDKDMALKEREFQL 246

Query: 480 REVKEI 485
           +E+++ 
Sbjct: 247 QELEKE 252


>gi|331028950|gb|AAK39135.2| Temporarily assigned gene name protein 278, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1163

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 120/372 (32%), Gaps = 48/372 (12%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           +E + ES RL +   R  +   + +  R    I+  EI        L +KI +       
Sbjct: 544 KEELEESARLDKDELREASEIEI-QALRTEKSILAAEI------RVLTQKIEDEEQDDIT 596

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             L  I +++++  R +   + R    D  + ++    + E     + N L      + +
Sbjct: 597 EQLAKIVEDTSQLTRTLEEYRERITGKDAEILNLRKQLEKEISHTEDRNRLLHENTQKEL 656

Query: 356 PLDG--------ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                       +L+  +   +        +  +   +  E+          ++++  + 
Sbjct: 657 EAHKETHTETVRVLEAEIDQFKSAFENEQEYGKEKSAKIRELEAQNKTLLSEMEKVKHVA 716

Query: 408 RN-------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK-------LEEYQIKSELDN 453
            N       +D     + S+    E+    I  L  +   K       LE+   + E+DN
Sbjct: 717 ENLEAFTSDKDNLLEELESKNKNIEHLKQEIAQLNEKISTKETEKDSELEKTIAQLEIDN 776

Query: 454 --LLAEKEKIDSLLNSGKQQWNQIACEI----REVKEIFSKSTDLGRRRTTFCE------ 501
                + EK+   +N    Q   I  E+     E+K I +K+  L    T   E      
Sbjct: 777 SSKSDQIEKLHLRVNDMLDQMGTIKDELVKKNEEIKTISAKTAQLLESNTVESETKLASV 836

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHSVDLSALHFKEGDSLKIALHA 557
               +K          E    V++    I      LK   V+L+ +  K  D  +     
Sbjct: 837 TEEREKEIQSFQTQISEKDNEVLTKAERINELETCLKEREVELTGMRTKLDDMTQQLNEE 896

Query: 558 HTTDRILLLSTD 569
            T   ++L    
Sbjct: 897 TT---VVLFDNS 905


>gi|256544750|ref|ZP_05472122.1| surface protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399639|gb|EEU13244.1| surface protein [Anaerococcus vaginalis ATCC 51170]
          Length = 784

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 70/222 (31%), Gaps = 23/222 (10%)

Query: 284 EKIAELIIAKRI--PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLS---DMETR 338
            KI +L    +     ++D+ D+  ED   +   K +        E +       + E R
Sbjct: 296 NKIDDLTKNIKDLENQIKDLNDKKQEDQSKIDELKKKLESCKDNGEKLKQEKSKLEEEIR 355

Query: 339 FPLNMNVLSMGRVPQVMPL---DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
              N        +  +      D ++ E    + +   +R  +    +       K  L 
Sbjct: 356 DKDNKIAQLNKEIEDLKNSNNNDELIAEIT--QLKDELKRLQYENAKLKEDYSSTKWELE 413

Query: 396 A-----------YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444
           A              + E +  +  E   K   +         ++  L+ +   ++ LE 
Sbjct: 414 AEKEKTGKNENKIKEMQEKLESLEGELAKKTKEIEDKDNKIKDLEKALDEKDTKIKDLES 473

Query: 445 YQIKSE--LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484
            + ++E        + E++   ++S K+       E+ +  +
Sbjct: 474 KKKETENSKSECCKKIEELQKAIDSLKESSENTKKELEDKIK 515


>gi|188587351|ref|YP_001918896.1| extracellular solute-binding protein family 5 [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352038|gb|ACB86308.1| extracellular solute-binding protein family 5 [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 524

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSK--STDLGRRRTTFCEVSRADKATLQQAMIE 516
           E+ +       +    I  EI EV+ I++   + D+ +      E+   D+      + E
Sbjct: 225 ERYEDYHEGPAELKKIIRREIPEVEAIYADLMAGDIDKGIVPDQEIDDIDENPDYTLIQE 284

Query: 517 KEPITVVI-SNRGWIRSLKSHSVDLSALHFKEGDS---LKIALHAH 558
           +      I  N G+    K   +++     K  D    ++      
Sbjct: 285 RTLNYFPIFINHGYDGHDKLSQLEVRRALNKAADYDQIVEHIFPTS 330


>gi|223932613|ref|ZP_03624613.1| RNA binding metal dependent phosphohydrolase [Streptococcus suis
           89/1591]
 gi|330832243|ref|YP_004401068.1| RNA binding metal dependent phosphohydrolase [Streptococcus suis
           ST3]
 gi|223898723|gb|EEF65084.1| RNA binding metal dependent phosphohydrolase [Streptococcus suis
           89/1591]
 gi|329306466|gb|AEB80882.1| RNA binding metal dependent phosphohydrolase [Streptococcus suis
           ST3]
          Length = 537

 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%)

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
            +    +     E Q + IL    R  + L++  +    +     +E+I     S +Q+ 
Sbjct: 42  AEQEASNVRGRAEEQAEVILKTAERDRQTLKKELLLEAKEEARKYREEIAEEFKSERQEL 101

Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524
            QI   + E      +  D    +    E          + + E+E   V +
Sbjct: 102 KQIESRLTERATSLDRKDDNLTNKEKTLEQKEQSLTDKAKHIDEREQEVVKL 153


>gi|307200507|gb|EFN80669.1| Intraflagellar transport protein 74-like protein [Harpegnathos
           saltator]
          Length = 657

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 76/236 (32%), Gaps = 22/236 (9%)

Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313
            +   +E+ +    +    + Y+  K   IEK+ +L       L       +  +     
Sbjct: 415 KQVKYKELRKREETMEQFMLTYEQNKQEEIEKLEKLKRDIVDKLAAVANGVANNEYLTEA 474

Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE-VL 372
                       M  +        +F  N   ++                     +  +L
Sbjct: 475 EE----------MAVL------RDKFSYNDYEVTHHDDDFDSLKKDYATMQQTFNKMRIL 518

Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432
             +     + +  +++  +  LI   ++D +    RNE K   ++V R  L     + I 
Sbjct: 519 EEKLQLESKQMKEKLKKQQSELIILEDLDGL--KTRNELKRDELIVEREGLVSE--ETIR 574

Query: 433 NLRLRSL-RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487
              L+SL  + +E + K E   +  E   ++  L   K    +I   + + KE  +
Sbjct: 575 EDELKSLQTEYDEIKEKLEKYEVYPEINSLEDKLAKLKADNKEIKEFMNKEKERVN 630


>gi|268572101|ref|XP_002641234.1| Hypothetical protein CBG09100 [Caenorhabditis briggsae]
          Length = 1136

 Score = 37.8 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 97/271 (35%), Gaps = 31/271 (11%)

Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303
           R+     R   R   EE  R    I   EI  ++ + R +E++ ++   ++   +     
Sbjct: 502 RMAMERERELERIQQEERKREMERIRQEEIAMEISRMRELERL-QMERQQKNERVRQEL- 559

Query: 304 ESAEDVRIVLFPKNRSLDPDL-LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362
           E+A   +I+   + R +   +  ME I    +      +        R  + +  + + +
Sbjct: 560 EAARKQKILEEERQRKIKEQMREMEKIRKEQEEAREIEMRRLEEERAREMERVREEEMER 619

Query: 363 EWLAHRREVL---FRRSSFRMQAIDRR---VEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
           +    R        +R    M+  +R+   +E  +   +    ++E    I  E++ + +
Sbjct: 620 QQQIERLRQQEEERKRKKLEMEKEERKKALIEEERKRKVLEKELEERRQAILEEERKRKI 679

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
           +       E Q  AI   + R  +  EE + + E++                     QI 
Sbjct: 680 LEKEME--ERQT-AIYEEQQRR-KAEEERRKQKEMEE------------------RKQIQ 717

Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507
            ++R+V E  S+   + R R    ++   + 
Sbjct: 718 EQMRKVSEERSRLEAMERERELMRQIIENEN 748


>gi|326680310|ref|XP_001921350.3| PREDICTED: ras association domain-containing protein 8-like [Danio
           rerio]
          Length = 429

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 16/222 (7%)

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
           D   E+    S  ET     M  L             ++ E        L       M+ 
Sbjct: 197 DKECETWEKSSAKETSLQAEMEALEKML---WKNQQELVDEEFWQEELRLETERERGMK- 252

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD-----AILNLRLR 437
             R  E+   L      + E        +K     + R  +   Q D      ++   L+
Sbjct: 253 -RRVGELHAKLDDCGQKLHEFNNRAIQLEKDIQREMLRVDILPVQSDSKDSLEVVKADLQ 311

Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-----EIFSKSTDL 492
           S +K  E  +++EL  L     + ++LL + +++  ++  E+R+       +        
Sbjct: 312 SRQKQGEE-MEAELKELEKTLGRAETLLKAKQEEIEELNKELRQCNLQQFIKQAGAPPTQ 370

Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
            + RT  CE       T QQ   +   +T+  + + ++   +
Sbjct: 371 TQLRTDLCEHPEELNQTQQQDKHKDNDLTLRPTAKQFLGHPR 412


>gi|145486720|ref|XP_001429366.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124396458|emb|CAK61968.1| unnamed protein product [Paramecium tetraurelia]
          Length = 736

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAE---------DVRIVLFPKNRSLDPDLLMES 328
              ++ E   + +I +    +  ++DE A               +  +   ++ D  +  
Sbjct: 339 NNPKINEDPKDAMIREFQEQINKLKDELARKAGGVIGPNGQIQKIKEQVIEVEDDEELTE 398

Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388
           +   +  E        +    +          L+  L  ++++       +     +  E
Sbjct: 399 LQKKAQKEKADLEQQIMQQRRQSTLQEEEKKQLQLKLKEKQKLEHNLKKEQENMQKKLQE 458

Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---LRLRSL-----R 440
           + + LL      +E     ++  K +  +  R      Q + +     +++         
Sbjct: 459 LQEQLLHGDKMKEESRQKEKDLLKARMELEERSQQARRQAEELAKKEAMQMEQEQKYNST 518

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482
           K E      +L+NL+ + +++ S      Q   +   E+ E 
Sbjct: 519 KEEIEAKTQKLNNLIQKIKELKSQAQEQTQFRQRQKEELIED 560


>gi|68471408|ref|XP_720252.1| hypothetical protein CaO19.10247 [Candida albicans SC5314]
 gi|46442111|gb|EAL01403.1| hypothetical protein CaO19.10247 [Candida albicans SC5314]
          Length = 409

 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 83/229 (36%), Gaps = 19/229 (8%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSL-DPDLLMESIFMLSDMETRFPLNMNVLSMG 349
             +++   +   D ++  V        +++ +     ++    +D    F ++  + ++ 
Sbjct: 100 QQQKLHDFDFTSDSNSYLVLNESDEFEKNIKNSHDENDTEDRSTDERNDFRMSTRIKTLN 159

Query: 350 RVPQVMPLDGILKE-WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408
           ++  ++  +  +         ++L      +     +  E     L    + D  + +  
Sbjct: 160 KIFAILSNNQEIDHPLSEDCAKLLIENYQLKFDQSQKEKETYLSFLRKLKDKDSQLNLFN 219

Query: 409 NEDKPKPVMVS---RFSLTENQVDAILNLR---------LRSLRKLEEYQIKSELDNLLA 456
            +D+   ++        L +    +I   +         L+ L+KLE+ + + E   L  
Sbjct: 220 EDDENNEIVNPDLLHQDLDQKLYQSIQEFQKLSVQEKENLKELKKLEQTKTELET-QLSN 278

Query: 457 EKEKIDSL----LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            ++++++L    LNS  +  N++  E+ E  +   +S      +    +
Sbjct: 279 YEQELNNLRENGLNSILKLKNKLQLELNEKNKKLEQSKAAYDVQLDHID 327


>gi|170676506|gb|ACB30406.1| paramyosin [Chorioptes panda]
          Length = 875

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 84/254 (33%), Gaps = 18/254 (7%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337
             + L +++A+ +   R  L E+ R  ++ +                L E      ++E 
Sbjct: 224 NANHLKQQVAQQLEDTRHRLEEEERKRASLENHAHTLEVELESLKVQLDEESEARLELER 283

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY 397
           +        +  +      L     E    RR++  + S +  + ++  +     L    
Sbjct: 284 QLTKANGDAASWKSKYEAELQAHADEVEELRRKMAQKISEYE-EQLEALLNKCSSLEKQK 342

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI-LNLRLRSLRKLEEYQIKSEL--DNL 454
             +   + ++  + +       +      Q++ I L+L+     KLEE  +  E     L
Sbjct: 343 SRLQSEVEVLIMDLEKATAHAQQLEKRVAQLEKINLDLK----NKLEEVTMLMEQAQKEL 398

Query: 455 LAEKEKIDSLLNSGKQQWNQ----------IACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             +  ++  L +  ++  +Q          +  ++ E K   + +      +    +   
Sbjct: 399 RVKIAELQKLQHEYEKMRDQRDQLARENKKLTDDLAECKSQLNDAHRRIHEQEIEIKRLE 458

Query: 505 ADKATLQQAMIEKE 518
            ++  L  A  E E
Sbjct: 459 NERDELSAAYKEAE 472


>gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19]
 gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri
           AV19]
          Length = 876

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431
             +     ++   R  E L+G L    N  E +   R +D  K V   + +  E Q    
Sbjct: 224 ELKERLNELREAKREFERLEGELRLLENKIESL-KGRRDDLRKLVEEGKEAERELQRLGD 282

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFS- 487
           +  ++R L   EE +++  ++ L    + + SL   L S +++   +  E+ E+K+    
Sbjct: 283 VPSKVRELEN-EEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKDEAGV 341

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
               L   +    E S   +   ++  +++
Sbjct: 342 DPERLVEFKDKIVEASERLRDLRREEELKR 371


>gi|253569937|ref|ZP_04847346.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840318|gb|EES68400.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 414

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 88/257 (34%), Gaps = 30/257 (11%)

Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279
            I  PD  TG I + ++   +       G   + +    EEV +G + I V + P   + 
Sbjct: 24  IIKYPDMVTGQIKINAQNPTIRLVANSTGNLLLLSHKAQEEVKKGEY-IAVVQNPASTED 82

Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339
            R   KIA+LI                           +   PD +   +  ++     F
Sbjct: 83  VR---KIADLINRIDFDG--------------THLLALKDTFPDKV--YLGEINPQYYAF 123

Query: 340 PLNMNV-LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
              +       +          +   +  +++++ R +    +A   R+++ +  L  Y+
Sbjct: 124 LAVLKAQCDYLQQNVYEKQRENITTSIEWKKKIV-REAEDSQKAAKDRMDVAQKWLKRYV 182

Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQ----VDAILNLRL----RSLRKLEEYQIKSE 450
           ++D+        +  +       ++ E Q      A   +++      L +LE  Q++ E
Sbjct: 183 SLDQQEIATYEYETDQIKNNYLTTVQEVQNINREIASTRMQITEAYHRLEQLEVEQLEKE 242

Query: 451 LDNLLAEKEKIDSLLNS 467
            +  +       +L+ +
Sbjct: 243 RELKVELLSTHQNLIAN 259


>gi|255713602|ref|XP_002553083.1| KLTH0D08558p [Lachancea thermotolerans]
 gi|238934463|emb|CAR22645.1| KLTH0D08558p [Lachancea thermotolerans]
          Length = 930

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299
               ++  GG     +  V+ + +G    V+ E+  +  + R    I E I  ++I   E
Sbjct: 303 EHHGKINMGGGLWLTQADVQNIAQGLITPVLDEVDSRALQQR---AIDEDIKQRKIDFKE 359

Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
              + +  +++      ++    +  M        +  R       L   +  +V  ++ 
Sbjct: 360 Q--NAAWIELQRNKLSNDKMYSRETRMRHKRETEGLHARTERKFQDLCASKDSEVAEMEK 417

Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            L+        +  +     ++    RVE     L      D   A +  E + KP +  
Sbjct: 418 ALQNAKDSYAALQKQMEE-DLEKERLRVEAEVAALKKEQEEDLKAARVEQEQELKPYVD- 475

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479
                    +A            E  ++ +E D+L  E E++ + + S K +  ++  EI
Sbjct: 476 ----DVKAAEA------------EHERLTAERDSLNKEIEELRASIESHKVRIEELDNEI 519

Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKA 508
            +      +        T   E    + +
Sbjct: 520 SDSAAKHEEEEGKREELTKHKEEFDQEVS 548


>gi|123456829|ref|XP_001316147.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121898845|gb|EAY03924.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 2010

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 24/205 (11%)

Query: 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PKNRSLDPDLLMESIFMLSDM 335
               L ++I +L   K       I +E       VL      R+   + L +     +++
Sbjct: 684 TIENLKKEIEDLKKEKDNFDSISIENEDLRSQVEVLIKVEDERNQMSEELEKLRANYNEL 743

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLI 395
           +++        +   + +++     L+E L     +     S +++ I+   E    ++ 
Sbjct: 744 QSQISKQNFENNKETIEKLIGEKSKLQEELE---SIKNELDSIQVEKIESENESSSKIIA 800

Query: 396 AYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455
               IDE+   I N  + K      F++ E +                    +SE+  L 
Sbjct: 801 LTEEIDELKNQINNISEQK--STLEFTIDEIKAQ-----------------NESEISQLK 841

Query: 456 AEKEKIDSLLNSGKQQWNQIACEIR 480
            E E ++S + S  ++ N++  EI 
Sbjct: 842 KENEDLNSKIESLSKENNELKTEIE 866


>gi|168486567|ref|ZP_02711075.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570412|gb|EDT90940.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1087-00]
          Length = 1179

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 11/192 (5%)

Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438
             +    R+     +     N++  I  I++                 Q   +L   L+ 
Sbjct: 765 DKEKCQERL---AAIASDKQNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQG 820

Query: 439 LRKLE---EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            ++ E     ++  ELDNL  E+E+I  LL        ++  E+   +   SK+     +
Sbjct: 821 QKRYEVADIERLGKELDNLDFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNLQ 880

Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555
           +    +    D    Q   I          N  WIR           +  +    L+   
Sbjct: 881 QGLIRKQFELDDIEGQLDDIASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQ 936

Query: 556 HAHTTDRILLLS 567
           +  T    +  +
Sbjct: 937 NQLTDQYQISYT 948


>gi|149692354|ref|XP_001500608.1| PREDICTED: similar to Cingulin-like protein 1 (Paracingulin)
           (Junction-associated coiled-coil protein) [Equus
           caballus]
          Length = 1297

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 72/206 (34%), Gaps = 16/206 (7%)

Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385
           +  +F                +         +  +L++      EV   +   +++ +  
Sbjct: 573 VNLVFEKIQTLKSRAAGSTPGNNQASNSSSEVKDLLEQKNKLTTEVAELQRQLQLE-VKN 631

Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL--RKLE 443
           +  I +       N++E+ +    + +   V+  R   +E +    L   L  L   K+E
Sbjct: 632 QQNIKEERERMKANLEELQSQHDTKVEENSVLQQRLEESEGE----LRKNLEELFQVKME 687

Query: 444 EYQIKSELDNLLAEKEKIDSLLN----SGKQQWNQIACEIREVKE-----IFSKSTDLGR 494
             Q ++E+ +L  +  ++   L+    S  ++   +  E+ + K+     + +K      
Sbjct: 688 REQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGVLIEELLQAKQDLQDLLIAKEEQEDL 747

Query: 495 RRTTFCEVSRADKATLQQAMIEKEPI 520
            R    E++    A  ++     + +
Sbjct: 748 LRKRERELTALKGALKEEVSSHDQEM 773


>gi|17550052|ref|NP_508635.1| Temporarily Assigned Gene name family member (tag-278)
           [Caenorhabditis elegans]
 gi|2496852|sp|Q11102|TG278_CAEEL RecName: Full=Putative protein tag-278
          Length = 1130

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 120/372 (32%), Gaps = 48/372 (12%)

Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295
           +E + ES RL +   R  +   + +  R    I+  EI        L +KI +       
Sbjct: 511 KEELEESARLDKDELREASEIEI-QALRTEKSILAAEI------RVLTQKIEDEEQDDIT 563

Query: 296 PLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355
             L  I +++++  R +   + R    D  + ++    + E     + N L      + +
Sbjct: 564 EQLAKIVEDTSQLTRTLEEYRERITGKDAEILNLRKQLEKEISHTEDRNRLLHENTQKEL 623

Query: 356 PLDG--------ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII 407
                       +L+  +   +        +  +   +  E+          ++++  + 
Sbjct: 624 EAHKETHTETVRVLEAEIDQFKSAFENEQEYGKEKSAKIRELEAQNKTLLSEMEKVKHVA 683

Query: 408 RN-------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK-------LEEYQIKSELDN 453
            N       +D     + S+    E+    I  L  +   K       LE+   + E+DN
Sbjct: 684 ENLEAFTSDKDNLLEELESKNKNIEHLKQEIAQLNEKISTKETEKDSELEKTIAQLEIDN 743

Query: 454 --LLAEKEKIDSLLNSGKQQWNQIACEI----REVKEIFSKSTDLGRRRTTFCE------ 501
                + EK+   +N    Q   I  E+     E+K I +K+  L    T   E      
Sbjct: 744 SSKSDQIEKLHLRVNDMLDQMGTIKDELVKKNEEIKTISAKTAQLLESNTVESETKLASV 803

Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHSVDLSALHFKEGDSLKIALHA 557
               +K          E    V++    I      LK   V+L+ +  K  D  +     
Sbjct: 804 TEEREKEIQSFQTQISEKDNEVLTKAERINELETCLKEREVELTGMRTKLDDMTQQLNEE 863

Query: 558 HTTDRILLLSTD 569
            T   ++L    
Sbjct: 864 TT---VVLFDNS 872


>gi|325121501|gb|ADY81024.1| ATP-dependent protease [Acinetobacter calcoaceticus PHEA-2]
          Length = 859

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDVGSKAEVTHLEKQIAEVEKEYNDLEEIWKSE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|304439313|ref|ZP_07399227.1| relaxase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372192|gb|EFM25784.1| relaxase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 455

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 92/254 (36%), Gaps = 21/254 (8%)

Query: 243 YRLGRGGFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301
           Y +  G +   +    E+  +G +     T +       ++ E+I   +  K I +  D 
Sbjct: 210 YEIKLGKY--LSFRHKEQGEKGRFIRAKETTLGKDYTNEKIKERIENNMHKKFIKIDFDS 267

Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361
             ++ + V  ++  KN        ++S         +  +N    ++ ++ +      I 
Sbjct: 268 STKAYKKVDNIIDLKNNKK-----IQSSKAYEIWTKKHNMNTMADTLNQLRKYGLTSNID 322

Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL--NIDEIIAIIRNEDKPKPVMVS 419
            E    +  +  +++  +++ I++ +  +   + A     I++ I  I   +       +
Sbjct: 323 LENKLQQEAINRQKTLDKIKDIEKDLNKIYTAIEALNTLQINKSIYEIYKSNSKDKEFYA 382

Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIK----SELDNLLAEKEKIDSLLNSGKQQWNQI 475
            +       +       +SL  L++ + K     EL N+  E +    +L       N +
Sbjct: 383 EYKTQIITYE-------KSLTTLDKNKYKNLSIKELSNIYDEYKSKKDILMVEYSNKNIL 435

Query: 476 ACEIREVKEIFSKS 489
             E+ ++++   K 
Sbjct: 436 IYELTQLRKNTDKY 449


>gi|326791549|ref|YP_004309370.1| 2,3 cyclic-nucleotide 2-phosphodiesterase [Clostridium lentocellum
           DSM 5427]
 gi|326542313|gb|ADZ84172.1| 2,3 cyclic-nucleotide 2-phosphodiesterase [Clostridium lentocellum
           DSM 5427]
          Length = 528

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 14/134 (10%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416
            +  ++      +EV  RR+   +Q +++R      LL    NID     +  +++    
Sbjct: 78  KEENIRVKNELDKEVRERRN--ELQQMEKR------LLHKEENIDRKTVTLEQKEEQLQR 129

Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476
            + +   T  + +A+   +L  L ++    +      LL   E+        + +   + 
Sbjct: 130 KIDKADKTREEAEALHQKQLEELERISGLTLTEAKQYLLRTIEE------DVRHESAIMI 183

Query: 477 CEIREVKEIFSKST 490
            EI    ++ +   
Sbjct: 184 KEIEAKTKLEADKK 197


>gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551]
 gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551]
          Length = 1198

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434
           R     +  D   ++      A    D + ++  + D+ +  +  + +  E   D I  L
Sbjct: 711 RREIEQEIRDIESQLDDAREKASDAADRVRSVEADIDRAEEDVEEKKAEIEQLEDRIEEL 770

Query: 435 RLRSLRKLEE--------YQIKSELDNLLAEKEKIDSLLNSGKQ-QWNQIACEIREVKEI 485
           R +     EE          + +++D++ +E ++++S L   K  +    A EIR   E 
Sbjct: 771 REKRAEVDEEMQSLDTDIDALTADIDDVQSEIDELESELADSKIPELTAQADEIRAEIEE 830

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                D    R    ++ +       + + E
Sbjct: 831 KEDRMDELDGRLNELQLEKEYAEDAIEDLNE 861


>gi|167765977|ref|ZP_02438030.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1]
 gi|167712334|gb|EDS22913.1| hypothetical protein CLOSS21_00468 [Clostridium sp. SS2/1]
 gi|291558771|emb|CBL37571.1| uncharacterized domain HDIG [butyrate-producing bacterium SSC/2]
          Length = 448

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 56/343 (16%)

Query: 181 SGIAVGMATSIPSHNVQEIC----EAALALIDNPEISI--EKLLEYIIGPDFPTGGIIVE 234
           +GI  G  T + +H   E+     +        P+     + L E ++  DF    +   
Sbjct: 63  TGIEHGTVTVLMNHEPYEVTTYRVDGKYEDHRRPKEVHFTKSLREDLLRRDFTINAMAYN 122

Query: 235 SRESIVESY--RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ-KSRLIEKIAELII 291
             E I++ Y          +R     ++        ++  + +Q Q   ++ EK  E I 
Sbjct: 123 DSEGIIDMYDGMTDLKNQIIRCVGEAKKRFDEDALRILRALRFQAQLGFQIEEKTEEAIK 182

Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES--------------IFMLSDMET 337
            +     + ++D SAE +++ L     S  P++L+ +              I M +    
Sbjct: 183 NQA----KFLKDISAERIQVELEKLITSAHPEVLVNAYKLGVTKIIFPEFDIMMETPQNN 238

Query: 338 RFPLNMNVLSMGRVPQVMPLDGILK---------------------EWLAHRR------E 370
                   +      + +  + I +                      +  H         
Sbjct: 239 PHHKYNVGIHTIEAMKQIKAEHIYRWTMLLHDVGKPTARVEGPDKDHFKMHPVIGEEMAR 298

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + RR  F  Q I +   +++     + +I+E+          +        L E Q   
Sbjct: 299 KILRRLKFDNQTIKQVTTLVRWHDRRFASIEEVNKKTVRRWVSQLTPELFTRLMEVQKAD 358

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
           I         + ++ Q+  E   L  E  +  + L+  + + N
Sbjct: 359 ISAQSDYQ--RDKKEQVLQETKKLFEEIIEEKNCLSIKELKIN 399


>gi|152993455|ref|YP_001359176.1| molecular chaperone DnaK [Sulfurovum sp. NBC37-1]
 gi|166918272|sp|A6QBG0|DNAK_SULNB RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName:
           Full=Heat shock 70 kDa protein; AltName: Full=Heat shock
           protein 70
 gi|151425316|dbj|BAF72819.1| chaperone protein DnaK [Sulfurovum sp. NBC37-1]
          Length = 627

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 401 DEIIAIIRNEDKPKPVMVSRFS---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457
           DE I  +  + +       +       +NQ DA+++   +SL  L E    +E   + A 
Sbjct: 503 DEEIEKMVQDAEAHKAEDEKRKAVVEAKNQADALIHQTKKSLDDLGENFDANEKAGIEAA 562

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEI 485
              ++++L        QI  +++ + E 
Sbjct: 563 IADLETVLKDDNATKEQIDEKVKALTEK 590


>gi|123430822|ref|XP_001307976.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121889632|gb|EAX95046.1| hypothetical protein TVAG_034750 [Trichomonas vaginalis G3]
          Length = 1098

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 89/253 (35%), Gaps = 20/253 (7%)

Query: 278 QKSRLIEKIAELI--IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDM 335
            K  +I+++   I  + ++I  +    DE   +   +L       D    +    + +D 
Sbjct: 658 SKQTVIDQLDTEIIGLNQQIEKISKTTDEELNNANEILEKTREEYD----LHITQICTDY 713

Query: 336 ETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF--RMQAIDRRVEILKGL 393
           ET+     + +   R      +  +++++    + +    S+     +++ RR E +   
Sbjct: 714 ETKISQIQSQMLQTRDDYEDHIKDLIRDYEMQVKTLKSDLSNHDSESESLRRRYEPIVQE 773

Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453
           L      +++   I  E   K  +           ++I N  L S  KL E + + E++ 
Sbjct: 774 LN-----EKLSQTIERELNLKAQVKDLQEKISESQNSIANYDLSS--KLSEVKHRDEVER 826

Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
           +  E       +N+ K Q   IA E +   EI    +     +    E      + +   
Sbjct: 827 IKREAA-----MNNSKMQAKIIAQEDKYKSEIEQLKSKHEIEKVKIIEDIAKPFSVVLGI 881

Query: 514 MIEKEPITVVISN 526
               E + +  + 
Sbjct: 882 EGLDENVILQTTK 894


>gi|56807884|ref|ZP_00365716.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 73

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 6/50 (12%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707
           + + V+     ++  ++  I +  R   GV++        + ++ F + +
Sbjct: 3   EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDAD--AKIVTFTLVQ 50


>gi|257865662|ref|ZP_05645315.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257871997|ref|ZP_05651650.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257799596|gb|EEV28648.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257806161|gb|EEV34983.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 1678

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 87/232 (37%), Gaps = 14/232 (6%)

Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340
           + +E + + +   +   +  +  ++ +   I+   K   +  + L + +      +    
Sbjct: 88  KTVEHLTKQL-ENKQESINRMASQATQQESIIYENKQLQMRYNELQQQLKEAERQQEALK 146

Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400
            N       +  + +         +    E L +R    ++ ++ + + ++ L    +++
Sbjct: 147 TNY-----EQEIEQLTSQEDELIEVEEELEQLRQREDELLKELEEKSKQVQALEEKAIHL 201

Query: 401 DEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE--- 457
           +E  AII N    +   + R +  EN+    LN+RL+          +S ++ L  +   
Sbjct: 202 EEKAAIIENYKLKEVESMRRITSLENENQQ-LNMRLQEAEAKYRDLERSRVEQLADKNVL 260

Query: 458 KEKIDSLLNSGKQQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRA 505
           +  ++  L   +Q  +++A  + E K    E  +++     RR    E    
Sbjct: 261 QRDLERELTKVEQMKDELATILIEAKEKARETAAEAELEADRRRQMAENEAH 312


>gi|221102272|ref|XP_002170393.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 898

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 33/204 (16%)

Query: 346 LSMGRVPQVMPLDGILKEWL-AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           +   +      +  IL        + +    S++    +   V+  K L      ++  +
Sbjct: 123 IQKDKKSWTENVKEILNLGFLDFDKLLKQEMSAYENNGVRALVDAYKNLTEEKNVLESTL 182

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAI-LNLRLR---------------------SLRKL 442
             +  +  PK  ++ + S+  N  D + L L+LR                     SL  +
Sbjct: 183 KTLSAKPSPKKCLLKKSSIASNFSDPLGLKLKLRTEQQEREKEQEVYSSMLKELQSLLNV 242

Query: 443 EEYQIKSELDNLLAEKEK------IDSLLNSGKQQWNQIACEIREV----KEIFSKSTDL 492
           E+ + +     L    E       + + LN   +Q   I  E  E     K+  +K+ D+
Sbjct: 243 EKLEKEQLRMQLSESIEDNMGDSTLKNTLNDLAKQLELIKKEKAEDLSVEKQRANKAEDM 302

Query: 493 GRRRTTFCEVSRADKATLQQAMIE 516
            + R    E   A+       + E
Sbjct: 303 LKLRQQLDEKRIAELELRISELSE 326


>gi|15240258|ref|NP_200954.1| MIM (hypersensitive to MMS, irradiation and MMC); ATP binding
           [Arabidopsis thaliana]
 gi|10177176|dbj|BAB10445.1| SMC-like protein [Arabidopsis thaliana]
 gi|332010088|gb|AED97471.1| protein MIM [Arabidopsis thaliana]
          Length = 1057

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 280 SRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSL-DPDLLMESIFMLS 333
           + L++++ +L+ +      +   + D  + + + +   +      + + + + E    L 
Sbjct: 185 ATLLQQVNDLLQSIYEHLTKATAIVDELENTIKPIEKEISELRGKIKNMEQVEEIAQRLQ 244

Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR-RVEILKG 392
            ++ +   +       ++ +       LKE    R      +  + +  ++  R  + K 
Sbjct: 245 QLKKKLAWSWVYDVDRQLQEQTEKIVKLKE----RIPTCQAKIDWELGKVESLRDTLTKK 300

Query: 393 LLIAYLNIDE----IIAIIRNEDKPKPVMVSRFSLTE------NQVDAILNLRLRSLRK- 441
                  +DE       I       K  +  + +L E      N V  I + R+R L + 
Sbjct: 301 KAQVACLMDESTAMKREIESFHQSAKTAVREKIALQEEFNHKCNYVQKIKD-RVRRLERQ 359

Query: 442 ---LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498
              + E  +K+      +E E+    L    ++   +   ++E +  F +    GR++  
Sbjct: 360 VGDINEQTMKNTQAE-QSEIEEKLKYLEQEVEKVETLRSRLKEEENCFLEKAFEGRKKME 418

Query: 499 FCEVSRADK 507
             E    + 
Sbjct: 419 HIEDMIKNH 427


>gi|924601|gb|AAA82889.1| CENP-F kinetochore protein [Homo sapiens]
          Length = 3210

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 885  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKEL 944

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 945  QLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYI 1004

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q   IL L+           +  +      +  K++ LLN     
Sbjct: 1005 DEREKSISELSDQYKQEKLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1063

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                  E+ ++KE F+K       +  F E    +     + + +
Sbjct: 1064 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQ 1108


>gi|156630875|sp|P49454|CENPF_HUMAN RecName: Full=Centromere protein F; Short=CENP-F; AltName: Full=AH
            antigen; AltName: Full=Kinetochore protein CENPF;
            AltName: Full=Mitosin; Flags: Precursor
          Length = 3210

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 885  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKEL 944

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 945  QLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYI 1004

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q   IL L+           +  +      +  K++ LLN     
Sbjct: 1005 DEREKSISELSDQYKQEKLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1063

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                  E+ ++KE F+K       +  F E    +     + + +
Sbjct: 1064 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQ 1108


>gi|118081858|ref|XP_424476.2| PREDICTED: similar to golgi antigen gcp372 [Gallus gallus]
          Length = 2701

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 97/322 (30%), Gaps = 52/322 (16%)

Query: 227  PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVT--------------- 271
               G + +  E++++SY       +V+     EE+      I++                
Sbjct: 1503 EKHGELQKEYETLLQSYENVTESIKVK-----EELRANKESILIQMKKKDEDVERRLERE 1557

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            +  +  +   + EK+A L         +D  + +  DV+  L  K+R      L  S+  
Sbjct: 1558 KDKHSKEMKNMEEKLAALQRE------KDYMEATVRDVQGSLTTKDRE--AKELEGSLNK 1609

Query: 332  LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
                   F  +M+ L   R   +       K        +  +    R+   +  V +  
Sbjct: 1610 TLAQLAAFTRSMSSLQDDRDRVIDESKTWEK---KFTETIQKKEEEIRL-KEETCVMLKD 1665

Query: 392  GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL----------------R 435
             +      ++E+   I   +  K    S       Q      +                +
Sbjct: 1666 QMKQMTTQVEELQVHISRLECNKKDWESESRREIQQHQETCEMLQVEKKELLNQLEGSQK 1725

Query: 436  LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
            L S  + E+ +++SE+ +L  +   +     S   +   +  E+    +    S    + 
Sbjct: 1726 LYSESQDEQQKLESEIRSLKEQLADLQ----SSFARCELVRGELENTVKQQENSIQNLKF 1781

Query: 496  RTTFCEVSRADKATLQQAMIEK 517
                 E        L   + E+
Sbjct: 1782 SCEQLEADLQASKDLTNKLHEE 1803


>gi|311244286|ref|XP_003121389.1| PREDICTED: cep57-related protein-like [Sus scrofa]
          Length = 502

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
           L  ++  L  LE  Q +  L+ L  E  +    L +   + N    E+ + K+  S    
Sbjct: 105 LQEKIYRLE-LERTQAEDNLNILSREAAQYKKALENETSERNLAHEELIKQKKDISMQLS 163

Query: 492 LGRRRTTFCEVS-RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550
             + R T  E      K  +     EK+ I    +     +      +          D 
Sbjct: 164 SAQSRCTLLEKQLEYTKRMVLNVEREKDMILEQQAQLQREKEQDHMKLQAKLEKL---DV 220

Query: 551 LKIA-LHAHTTDRI 563
           L+       TT + 
Sbjct: 221 LEKECFKLTTTQKT 234


>gi|119474213|ref|XP_001258982.1| bZIP transcription factor, putative [Neosartorya fischeri NRRL 181]
 gi|119407135|gb|EAW17085.1| bZIP transcription factor, putative [Neosartorya fischeri NRRL 181]
          Length = 236

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405
           +      QV P   +L            RR        + R EI         NID++I+
Sbjct: 52  VDDWDDGQVKPQWSLLDRPHPVPTPHTTRR------KKNSRFEIPP--ERTLENIDQLIS 103

Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465
               E++ K +   +  L   Q    L+ R R   + EE  ++ +   L +    ++  L
Sbjct: 104 QSTIEEEIKELKQQKRLLRNRQAA--LDSRQRKRHRTEE--LEEQKKQLTSVITDLEEAL 159

Query: 466 -NSGKQQWNQI--ACEIREVKEIFSKSTDLGRR 495
            NS  ++   +    E+    +  ++  D    
Sbjct: 160 CNSRAREAELLGDKGELAAAIQQIAQYIDGLHE 192


>gi|293608681|ref|ZP_06690984.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829254|gb|EFF87616.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 838

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 219 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 267

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 268 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 325

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 326 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 385

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  +++   N  ++ W   
Sbjct: 386 EALDKLDRRLIQ----LKMQLEAVKKDEDVGSKAEVTHLEKQIAEVEKEYNDLEEIWKSE 441

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 442 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 494


>gi|254976714|ref|ZP_05273186.1| hypothetical protein CdifQC_15426 [Clostridium difficile QCD-66c26]
 gi|255094098|ref|ZP_05323576.1| hypothetical protein CdifC_15761 [Clostridium difficile CIP 107932]
 gi|255315849|ref|ZP_05357432.1| hypothetical protein CdifQCD-7_15894 [Clostridium difficile
           QCD-76w55]
 gi|255518510|ref|ZP_05386186.1| hypothetical protein CdifQCD-_15423 [Clostridium difficile
           QCD-97b34]
 gi|255651629|ref|ZP_05398531.1| hypothetical protein CdifQCD_15683 [Clostridium difficile
           QCD-37x79]
 gi|260684669|ref|YP_003215954.1| hypothetical protein CD196_2939 [Clostridium difficile CD196]
 gi|260688327|ref|YP_003219461.1| hypothetical protein CDR20291_2986 [Clostridium difficile R20291]
 gi|306521432|ref|ZP_07407779.1| hypothetical protein CdifQ_18021 [Clostridium difficile QCD-32g58]
 gi|260210832|emb|CBA65894.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214344|emb|CBE06711.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 1451

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 96/324 (29%), Gaps = 30/324 (9%)

Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334
           Y + +S   E I +L    +   L D   E     +++       ++  L  E    +  
Sbjct: 188 YGINQSEWKEIIIKLNSNNKEGGLSDFVKEHNTSEKLIRDKILPLIETSLTTEEFAPILQ 247

Query: 335 METRFPLNMNVLSMGRVPQ--VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392
           ++ +    +N +               +     + + ++  R         +   E+   
Sbjct: 248 IKEQVRKCINNIIDMNEKLSDYKNYRDLNIRVESLQNKIN-RILFIEEDKNNVLGELANL 306

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            +      +E+   I+   K K      F + E + D+    R     +  + +     +
Sbjct: 307 YVHIENKRNELNEEIKQYQKMKASKEEEFKIVEYEEDSYEYFRKEKEIQDTQVEFDKAKN 366

Query: 453 NLLAEKEKI---DSLLN----------------------SGKQQWNQIACEIREVKEIFS 487
            L  + E++   +  LN                      S KQ+      EI  +     
Sbjct: 367 ELNDKIEELELDEQYLNISKFKRKKKGLEEGEKDKIEKESEKQRKEVNQEEITAIINRLG 426

Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
            S     +  +     +  + T     I+++   +        + L S + ++  +  KE
Sbjct: 427 SSIHYCLKEESIINNEKLKENTNNNIAIQEKKNQLNDDKSKLTKVLISKNSEIKYIEGKE 486

Query: 548 GDSL--KIALHAHTTDRILLLSTD 569
            D          + TD    +S +
Sbjct: 487 RDFNNQLHEFKLNNTDIKGFISNN 510


>gi|298208347|ref|YP_003716526.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
 gi|83848268|gb|EAP86138.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
          Length = 680

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 17/197 (8%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--VKEIFSKSTDLGRRRTT 498
           KLE  Q  +         ++ + +    K++  +I+ E+ +  +  +F     LG   T 
Sbjct: 446 KLEREQQLANEQIYNLMIDQQNKISEGRKREKQRISKELHDGVLGSLFGTRLSLGSLNTK 505

Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ALHFKEGDSLK 552
             E +  ++      + E E     IS+    + LK   V  S       +  K G+   
Sbjct: 506 HDESAINNRQNYIDRLKEIEEEIRSISHNLQSKVLKEEQVFTSLIEELLEIQSKAGNFNY 565

Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612
                   D  ++   DGK   +    +L      EAIQ +       +++  F  +   
Sbjct: 566 AIQTQTDLDWDMI---DGKV-KINIYRILQ-----EAIQNINKYADATEVLLTFNANQNH 616

Query: 613 KLLVVSSKGNAFIVEES 629
             + +   G  F V++ 
Sbjct: 617 IKVTIEDDGVGFNVQKK 633


>gi|168748563|ref|ZP_02773585.1| conserved domain protein [Escherichia coli O157:H7 str. EC4113]
 gi|168753610|ref|ZP_02778617.1| conserved domain protein [Escherichia coli O157:H7 str. EC4401]
 gi|168766208|ref|ZP_02791215.1| conserved domain protein [Escherichia coli O157:H7 str. EC4486]
 gi|168772244|ref|ZP_02797251.1| conserved domain protein [Escherichia coli O157:H7 str. EC4196]
 gi|168779943|ref|ZP_02804950.1| conserved domain protein [Escherichia coli O157:H7 str. EC4076]
 gi|195936339|ref|ZP_03081721.1| hypothetical protein EscherichcoliO157_07723 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806475|ref|ZP_03248812.1| conserved domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208812467|ref|ZP_03253796.1| conserved domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208819176|ref|ZP_03259496.1| conserved domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399167|ref|YP_002273244.1| hypothetical protein ECH74115_5147 [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795721|ref|YP_003080558.1| non-LEE-encoded type III secreted effector [Escherichia coli
           O157:H7 str. TW14359]
 gi|187771530|gb|EDU35374.1| conserved domain protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016927|gb|EDU55049.1| conserved domain protein [Escherichia coli O157:H7 str. EC4113]
 gi|189002357|gb|EDU71343.1| conserved domain protein [Escherichia coli O157:H7 str. EC4076]
 gi|189358963|gb|EDU77382.1| conserved domain protein [Escherichia coli O157:H7 str. EC4401]
 gi|189364593|gb|EDU83012.1| conserved domain protein [Escherichia coli O157:H7 str. EC4486]
 gi|208726276|gb|EDZ75877.1| conserved domain protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733744|gb|EDZ82431.1| conserved domain protein [Escherichia coli O157:H7 str. EC4045]
 gi|208739299|gb|EDZ86981.1| conserved domain protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160567|gb|ACI38000.1| hypothetical protein ECH74115_5147 [Escherichia coli O157:H7 str.
           EC4115]
 gi|254595121|gb|ACT74482.1| non-LEE-encoded type III secreted effector [Escherichia coli
           O157:H7 str. TW14359]
          Length = 802

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 92/315 (29%), Gaps = 21/315 (6%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
             D         S++ +     +        ++  + +  +    I +  I +   +S+ 
Sbjct: 464 CKDCAIDPNTNYSKDGLTAQKYMYMDLDGAISKEQIPDFLKKVSAINIDVINFYNSESKT 523

Query: 283 IEK-------IAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSD 334
            EK       +   +    +           ++ R+     K+   +   ++ ++     
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEEKYHFDNSRVEFFIFKDMQENAQNIINNMIESDR 583

Query: 335 METRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKG 392
           ++    + N  +               +++ +    +      +F  + +    E + + 
Sbjct: 584 IKFVESIINKMIPPPDGTILTENPKEYVQKQIKESHKESATNVTFDYKELAPIFEGVEEK 643

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + A  N  E I   + +   +    +R     +   AI               +     
Sbjct: 644 QIKALSNQLEHIKSFKTDYDSRLNKYARDFYYFSSAFAI-----------NWEDLLKNYQ 692

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + A  +  D LL   K+        + + + +F    D         EV+  +   +  
Sbjct: 693 EIRASIKDYDDLLREIKELIISRNKSLEDKRTLFDNKRDNWNSIEVQDEVNALNAKIVDC 752

Query: 513 AMIEKEPITVVISNR 527
               +  +T+V +NR
Sbjct: 753 DDKIRSKLTIVRNNR 767


>gi|119484150|ref|XP_001261978.1| hypothetical protein NFIA_097030 [Neosartorya fischeri NRRL 181]
 gi|119410134|gb|EAW20081.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 1143

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 95/314 (30%), Gaps = 16/314 (5%)

Query: 208 DNPEISIEKLLEYI-IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266
            +P +S    + +       P+  +    R SI   Y       R         V     
Sbjct: 417 QSPAMSSAGYMPHYAPYYHHPSPNMRPTPRGSIDPHYVSAYQAIRDMGLPNGHGV-NDRG 475

Query: 267 CIVVTEIPYQVQKSR---LIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323
            I     P Q Q      L+++I E I      LL+  ++  ++        K      +
Sbjct: 476 TIS----PPQEQHDEPIELLQRIQEAIPDIN-RLLDGYKNTKSKLAAREAEFKQMETQHE 530

Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383
             +       +        M   +     +   L   + E       +  +R        
Sbjct: 531 QALMHKDFYIEALQN---QMRKAANESAEEATKLKNTINELRMELGNLEEKRKDIEESLA 587

Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-FSLTENQVDAILNLRLRSLRKL 442
           +      + L        +I A+  N ++ +           E + +A+ N + + L +L
Sbjct: 588 EAEKSNQELLQTKSELEGQIAALKTNIEEAREAHEQELERQKEERAEALAN-QKQELTEL 646

Query: 443 -EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501
            EE + + E     A   +   LL+       +   E ++++E           + T  E
Sbjct: 647 FEEIKAEDEKAAAEALAAREKELLDQQATMKAEYEKEKQQLQEKHDTLQSEFDSKVTELE 706

Query: 502 VSRADKATLQQAMI 515
              A+ A+ ++ + 
Sbjct: 707 SKEAELASTKEELD 720


>gi|225856913|ref|YP_002738424.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
 gi|225724779|gb|ACO20631.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
          Length = 1179

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 11/209 (5%)

Query: 398 LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE---EYQIKSELDNL 454
            N++  I  I++                 Q   +L   L+  ++ E     ++  ELDNL
Sbjct: 781 QNLEAEIEEIKSNKNAIQERYQNLQEELAQAR-LLKTELQGQKRYEVADIERLGKELDNL 839

Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514
             E+E+I  LL        ++  E+   +   SK+     ++    +    D    Q   
Sbjct: 840 DFEQEEIQRLLQEKVDNLEKVDTELLSQQAEESKTQKTNFQQGLIRKQFELDDIEGQLDD 899

Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD-GKAY 573
           I          N  WIR           +  +    L+      T    +  +    KA+
Sbjct: 900 IASHLDQARQQNEEWIRKQTRAEAKKEKVSER----LRHLQSQLTDQYQISYTEALEKAH 955

Query: 574 TLPAGNLLSG--RGHGEAIQLLIDLNHNQ 600
            L   NL     +   +AI+ L  +N   
Sbjct: 956 ELENLNLAEQEVKDLEKAIRSLGPVNIEA 984


>gi|196014932|ref|XP_002117324.1| hypothetical protein TRIADDRAFT_61375 [Trichoplax adhaerens]
 gi|190580077|gb|EDV20163.1| hypothetical protein TRIADDRAFT_61375 [Trichoplax adhaerens]
          Length = 569

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 101/313 (32%), Gaps = 26/313 (8%)

Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247
             ++ +  + +I +  + L    E +  K +E+++  +     I +  +E  +E   L  
Sbjct: 203 RINVLTLELSDIRKEIVNLEKLLEEAHLKEVEHVLAIEKEQKNIDIVKKELSLEWSDLSE 262

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK----------IAELIIAKRIPL 297
              +++ R    E       +   E  Y  +   L +           I+ LI   +  L
Sbjct: 263 EKLKIKCREDQLEDEEKKLQLYQRE--YDTKMEGLGQAGFRADSAFGCISALISESKTDL 320

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
            +   +          +P N S     L + +  L++   +    +              
Sbjct: 321 DKKNLELEKFKTFRKKWPCNTSQVAQTLRKELQELTNNVAKLTTEVTNKEAMIATLKKRS 380

Query: 358 DGILKEWLAHR--REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415
             I  +    +  +++   R +FR             L      ++E     + + +   
Sbjct: 381 AEIQDKCSELQTAKKLAADRRNFREAK---------KLANELKALNEEHQNYKLQLQAVE 431

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID---SLLNSGKQQW 472
           V +   S    Q   +L+ R + +  +E  +  S L  ++   +K+     +L+S     
Sbjct: 432 VDLESHSADLVQAQTLLSNRQKEVNSIEMKECSSLLVIIVDSIKKLKSQLEILSSEDLLR 491

Query: 473 NQIACEIREVKEI 485
             I  E+     I
Sbjct: 492 TVIQQELTVYMMI 504


>gi|189091854|ref|XP_001929760.1| hypothetical protein [Podospora anserina S mat+]
 gi|188219280|emb|CAP49260.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1434

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 9/154 (5%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            +   +R    + + ++ +E  +  ++     ++       ED+   +   R +L + + 
Sbjct: 233 MQRELQRYKKHLTSAEKDLETYRQQIVEVQ--EKAKKKYATEDQGAELERLRQALEDKET 290

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI--- 485
           +     +L+   + EE + + +L NL  E   ++  L        Q   EI ++K+    
Sbjct: 291 EVD---KLQRQIE-EEQKEQDKLGNLQDEITDLEHDLRRKDDVITQQEDEIEDLKDKVTE 346

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           F +     +RR    E    D   L +A    E 
Sbjct: 347 FEEKLKETQRRMLEMEEKAKDSDRLHEAKDTIED 380


>gi|27803037|emb|CAD60740.1| unnamed protein product [Podospora anserina]
          Length = 1363

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 9/154 (5%)

Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428
            +   +R    + + ++ +E  +  ++     ++       ED+   +   R +L + + 
Sbjct: 233 MQRELQRYKKHLTSAEKDLETYRQQIVEVQ--EKAKKKYATEDQGAELERLRQALEDKET 290

Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI--- 485
           +     +L+   + EE + + +L NL  E   ++  L        Q   EI ++K+    
Sbjct: 291 EVD---KLQRQIE-EEQKEQDKLGNLQDEITDLEHDLRRKDDVITQQEDEIEDLKDKVTE 346

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
           F +     +RR    E    D   L +A    E 
Sbjct: 347 FEEKLKETQRRMLEMEEKAKDSDRLHEAKDTIED 380


>gi|307331534|ref|ZP_07610646.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306882805|gb|EFN13879.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 739

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE----IIAIIRNEDK 412
            DG +     H+R    +R+  ++  +D     +  L+     ID      +  I   D 
Sbjct: 117 DDGTVYCVYLHQRGDSDQRTQKQLDYLDDLASRINNLIAKADEIDNSAAGALKKIHGSDS 176

Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472
                    SL + Q +  + L  +SL K ++     EL     E  ++  LL+   +  
Sbjct: 177 HNFGHAKYDSLDDVQAERAVQLAKKSLAKYKQ---GEELS--TKELAELKQLLSDNAKDR 231

Query: 473 N 473
            
Sbjct: 232 E 232


>gi|156551435|ref|XP_001604367.1| PREDICTED: similar to ENSANGP00000000794 [Nasonia vitripennis]
          Length = 1964

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 42/286 (14%)

Query: 265  SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK------NR 318
            +  I   E+ YQ   + L ++  E I            +E  E  RI L  K        
Sbjct: 873  TQVIENQEVEYQTAIANLKKQSEEAIRNL---------NEEKEQTRITLEKKLQQNVSQL 923

Query: 319  SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG------------ILKEWLA 366
              + +  +  +    +       NM     G + +                  +L ++  
Sbjct: 924  GNEKEQEINQLQQRIEELQHHMENMREEQEGLLFRAENEKQKALLIVQQDLQALLVKYEN 983

Query: 367  HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
              RE+   + +      +      +         DE+  I    ++ K          E 
Sbjct: 984  VCRELEGEKGTLERVRREAAAHAEQDRSNLNKTRDELNRIKNKMEEAKLRADEEKLKLEL 1043

Query: 427  QVDAILNLRLRSLRKLEEYQIK-----SELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481
            +++ I N +  +L+  EE QI+      ++D L  + ++    L   +        E+ +
Sbjct: 1044 KMEEIRNEKENALKVCEELQIQLHMTEDKVDELQNQVQENCRKLKEAEITIETSRKELVD 1103

Query: 482  ----------VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517
                       KE ++ +    R R    E  R ++A   +   +K
Sbjct: 1104 LRRQLTDSNFEKEKYNSTNKDLRERIKQIETERREQARTLEDSYQK 1149


>gi|120609936|ref|YP_969614.1| ATPase [Acidovorax citrulli AAC00-1]
 gi|120588400|gb|ABM31840.1| ATPase AAA-2 domain protein [Acidovorax citrulli AAC00-1]
          Length = 869

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFS--LTENQVDAILNLRLRSLRKLEEYQI-KSEL 451
            A   IDE  A I+ E   KP  + +    L + Q++     + +     +   + + E+
Sbjct: 387 KAIDLIDEAAAKIKIEIDSKPEAIDKLDRRLIQLQIEREAVKKEKDEASQKRLALLEEEI 446

Query: 452 DNLLAEKEKIDSLLNSGK----------QQWNQIACEIREVKEI--FSKSTDLGRRRTTF 499
             L  E   ++ +  S K          +Q  ++  +I E+K    F+K  +L   R   
Sbjct: 447 GKLQKEIADLEDIWTSEKAQAQGSQQVREQVEKVKLQIEELKRKGDFNKVAELQYGRLPD 506

Query: 500 CEVSRADKATLQQ 512
            E    +    ++
Sbjct: 507 LERQLKEAQAKEE 519


>gi|15804313|ref|NP_290352.1| hypothetical protein Z5211 [Escherichia coli O157:H7 EDL933]
 gi|15833907|ref|NP_312680.1| hypothetical protein ECs4653 [Escherichia coli O157:H7 str. Sakai]
 gi|168759908|ref|ZP_02784915.1| conserved domain protein [Escherichia coli O157:H7 str. EC4501]
 gi|168786552|ref|ZP_02811559.1| conserved domain protein [Escherichia coli O157:H7 str. EC869]
 gi|217326585|ref|ZP_03442669.1| conserved domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|261225871|ref|ZP_05940152.1| hypothetical protein EscherichiacoliO157_14898 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258916|ref|ZP_05951449.1| hypothetical protein EscherichiacoliO157EcO_24387 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12518564|gb|AAG58916.1|AE005603_2 hypothetical protein Z5211 [Escherichia coli O157:H7 str. EDL933]
 gi|13364128|dbj|BAB38076.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|189369727|gb|EDU88143.1| conserved domain protein [Escherichia coli O157:H7 str. EC4501]
 gi|189373388|gb|EDU91804.1| conserved domain protein [Escherichia coli O157:H7 str. EC869]
 gi|217322806|gb|EEC31230.1| conserved domain protein [Escherichia coli O157:H7 str. TW14588]
 gi|320191185|gb|EFW65835.1| hypothetical protein ECoD_02606 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639443|gb|EFX09058.1| hypothetical protein ECO5101_06088 [Escherichia coli O157:H7 str.
           G5101]
 gi|320644884|gb|EFX13920.1| hypothetical protein ECO9389_11995 [Escherichia coli O157:H- str.
           493-89]
 gi|320650150|gb|EFX18646.1| hypothetical protein ECO2687_17445 [Escherichia coli O157:H- str. H
           2687]
 gi|320655498|gb|EFX23433.1| hypothetical protein ECO7815_14642 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|326337236|gb|EGD61071.1| hypothetical protein ECoA_05284 [Escherichia coli O157:H7 str.
           1044]
 gi|326341607|gb|EGD65396.1| hypothetical protein ECF_03192 [Escherichia coli O157:H7 str. 1125]
          Length = 802

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 92/315 (29%), Gaps = 21/315 (6%)

Query: 223 GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL 282
             D         S++ +     +        ++  + +  +    I +  I +   +S+ 
Sbjct: 464 CKDCAIDPNTNYSKDGLTAQKYMYMDLDGAISKEQIPDFLKKVSAINIDVINFYNSESKT 523

Query: 283 IEK-------IAELIIAKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSD 334
            EK       +   +    +           ++ R+     K+   +   ++ ++     
Sbjct: 524 KEKYKNAFLELESFLSTLYVENKSYEEKYHFDNSRVEFFIFKDMQENAQNIINNMIESDR 583

Query: 335 METRFPL-NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE-ILKG 392
           ++    + N  +               +++ +    +      +F  + +    E + + 
Sbjct: 584 IKFVESIINKMIPPPDGTILTENPKEYVQKQIKESHKESATNVTFDYKELAPIFEGVEEK 643

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452
            + A  N  E I   + +   +    +R     +   AI               +     
Sbjct: 644 QIKALSNQLEHIKSFKTDYDSRLNKYARDFYYFSSAFAI-----------NWEDLLKNYQ 692

Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
            + A  +  D LL   K+        + + + +F    D         EV+  +   +  
Sbjct: 693 EIRASIKDYDDLLREIKELIISRNKSLEDKRTLFDNKRDNWNSIEVQDEVNALNAKIVDC 752

Query: 513 AMIEKEPITVVISNR 527
               +  +T+V +NR
Sbjct: 753 DDKIRSKLTIVRNNR 767


>gi|328773418|gb|EGF83455.1| hypothetical protein BATDEDRAFT_22172 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 2442

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 99/263 (37%), Gaps = 21/263 (7%)

Query: 234  ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRL------IEKIA 287
             +RES++ +                +E+ R +       I  QV +  L      +  + 
Sbjct: 968  NNRESLLSAKIDRLESLLATTEASSDEITRATIDAHRKLIVMQVNEGMLARRYTALSDVE 1027

Query: 288  ELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLS 347
              +  +   L ED+ D S      +L  + +    + ++E +    +     P N ++L 
Sbjct: 1028 AFLQKENARLKEDLIDMSKSARETILRLQFKKNSTEAVLEKL--QHEFANSVPQNQHLLL 1085

Query: 348  MGRVPQVMPLDGIL----KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403
              R+   +    +L    +EW  H       R+    Q    R EI K      + +DE 
Sbjct: 1086 YNRLQTHISKTRLLMDREREWTEHCMSHEDNRNIIEKQ----RKEIYK----LTVQLDEA 1137

Query: 404  IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
              ++   ++       +   T++   ++L ++L  + +      ++ +  L   + ++  
Sbjct: 1138 TQLVNMHNELASKNSCQNPTTDSYAVSMLKVKL-EVHERRSELAETRIKTLETLEAEMIL 1196

Query: 464  LLNSGKQQWNQIACEIREVKEIF 486
             L+S ++ +  +  EI +V+E F
Sbjct: 1197 RLDSTEKMYTALREEIIQVQEDF 1219


>gi|297623055|ref|YP_003704489.1| preprotein translocase subunitSecA [Truepera radiovictrix DSM
           17093]
 gi|297164235|gb|ADI13946.1| preprotein translocase, SecA subunit [Truepera radiovictrix DSM
           17093]
          Length = 984

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 92/255 (36%), Gaps = 23/255 (9%)

Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
           + E+  ++++     A  +++DS+L    +    I+       + +     +  +     
Sbjct: 191 RPEQLVLRADTPLNYAIIDEVDSILIDEARTPLIISGPAELATDKYYVMAKIAAQLERGE 250

Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--SALHFKEGDSLKIALHAH 558
                DK        +++   + ++  G  ++ K+  VD   S+ + +    L+ AL A 
Sbjct: 251 PAEGEDKPATGDFTADEKTKDIHLTEAGIAKAEKALGVDDLFSSKNMELAHMLRQALRAR 310

Query: 559 TT---DRILLLSTDGKAYTLPA--GNLLSGRGHGEAIQLLIDLNHNQDI------VTAFV 607
                D+  +    G+   +    G L+ GR  GE +   I+      I      +    
Sbjct: 311 VHYHRDKQYVKDERGQIVIVDEFTGRLMPGRRFGEGLHQAIEAKEGVKIERENQTLATIT 370

Query: 608 YDSTCKLL--VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665
           Y +  KL   +    G A   EE E       G   L + +    + V++   D +    
Sbjct: 371 YQNFFKLYNKIAGMTGTAK-TEEKEFQEI--YGADVLTIPTN---RPVIRKDYDDIVYRT 424

Query: 666 ENRK--LLIFSIDQI 678
           E  K   ++  I+++
Sbjct: 425 EKGKFEAVVREIEEV 439


>gi|85859382|ref|YP_461584.1| ATP-dependent protease La [Syntrophus aciditrophicus SB]
 gi|85722473|gb|ABC77416.1| ATP-dependent protease La [Syntrophus aciditrophicus SB]
          Length = 812

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 289 LIIAKRIPLLEDIR-DESAEDVRIVLFP--KNRSLDP-DLLMESIFMLSDMETRFPLNMN 344
           L+  K+   +++   +E    VR+      +NR++   + L+ S+    +   +    ++
Sbjct: 97  LVEGKKRAAIKEYVPNEEYFFVRVEEIEDAENRNVVKTEALIRSLNAAFENYVKLSKKVH 156

Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404
           V  +G +  +     +     +H             Q I   V++ + L   Y  I   I
Sbjct: 157 VEMVGTIAAIDDPSKLADVISSH-----INLKLEDKQKILEIVDVNERLEAIYTLILSEI 211

Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464
            I+  E+K K  +  +   T  Q D  LN ++R+++K        E D    E   ++  
Sbjct: 212 EILEVEEKIKRRVKKQMEKT--QKDYYLNEQMRAIQK-----EMGEKDEFKNEIADLEKR 264

Query: 465 LNSGKQQWNQIACEIREVKEI 485
           L   K          +E+K++
Sbjct: 265 LKQKKMSEEATKKVKQEIKKL 285


>gi|125973783|ref|YP_001037693.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|125714008|gb|ABN52500.1| histidine kinase [Clostridium thermocellum ATCC 27405]
          Length = 392

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 121/383 (31%), Gaps = 37/383 (9%)

Query: 276 QVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-RSLDPDLLMESIFMLSD 334
                ++I+K  E I   +  L +   +   E VR+    +  +    +++     +   
Sbjct: 9   TANLDKIIKKTIEAINNSKAELFDIAENARNECVRLEKELEELKRRTSEIIKSVETLEVA 68

Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394
           +       M+V           L    +     R E+  +R       I RR E+   L 
Sbjct: 69  LYESKKRLMHVSRNYDKYSEEELREAYENADNIRVELAIKRER-EQYYIKRRNELEMRLK 127

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            AY  +++   +I         +         Q   I +++ R L  +   + + E    
Sbjct: 128 EAYKTVEKADNLISQIGISLSYLTGDLENVSLQ---IEDMKQRRLLGIRIIKAQEEERQR 184

Query: 455 LAEKEKIDSLLNSGKQQWN--QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512
           +A       + +   Q  +   +  EI E + + S          T   V R     +++
Sbjct: 185 VA-----REIHDGPAQSMSNIVLKAEICE-RLVDSDPEKAKDELRTLKSVVRDTLRDVRK 238

Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572
            + +  P+   + + G I +L+ +         +E   +K           +   T G  
Sbjct: 239 IIYDLRPM--SLDDLGLIPTLQRYIETC-----REESGIK-----------ITFKTRGTC 280

Query: 573 YTL-PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631
             L P  +L   R   EA+  +        +     +      L ++  G  F  +   +
Sbjct: 281 EQLKPVVSLTVFRLVQEAVNNIKKHARADKVTINLEFLEKELKLYIADNGVGF--DFDSL 338

Query: 632 IAN---TRKGKTFLKVSSEEKMK 651
            +N     KG   + +    ++ 
Sbjct: 339 KSNEEDINKGFGLISMRERVELL 361


>gi|325116777|emb|CBZ52330.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 639

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 60/159 (37%), Gaps = 7/159 (4%)

Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVD 429
           +  +R     + + R  E +  L +    +D++  +  + E K K   + +  L + Q  
Sbjct: 22  LKRQRDHLEKETVPRLEEDVCRLKMDLEQMDKLKELYADVELKAKAHDMEKAELKDAQNK 81

Query: 430 AILNLRLRS-LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ-----QWNQIACEIREVK 483
           A+ +  L+    + E   ++ ++  L     + ++ L    +     Q  +   ++++  
Sbjct: 82  ALESFMLQRSQHQEEIKHMEEQISVLQRTIAEQETRLADTSKDESLAQMQRTLSQLQDEF 141

Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
           E  +++      + +  +   AD     +       +T+
Sbjct: 142 EKTAQAKAEMDVQLSRKQTEMADIIRAHEEEARNLQLTI 180


>gi|301763032|ref|XP_002916947.1| PREDICTED: leucine-rich repeat and coiled-coil domain-containing
           protein 1-like [Ailuropoda melanoleuca]
          Length = 1058

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 404 IAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463
             II ++ +    + +     E Q+  IL  ++  ++K  + Q+  +   L    EK++ 
Sbjct: 842 CKIIEDQTETIGKLKACVQEREEQIK-ILQEKITEIQKCTQEQLDEKSSQLDDIIEKLER 900

Query: 464 LLNSGKQQWNQIA---CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
                ++   Q+     E+ E+++ +S        +             +++    KE
Sbjct: 901 HNERKEKLKQQLKVKELELEEIRKAYSTLNQKWHDKGELLSHLEMQVKEVKEKFENKE 958


>gi|260549974|ref|ZP_05824189.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
 gi|260406966|gb|EEX00444.1| ATPase with chaperone activity [Acinetobacter sp. RUH2624]
          Length = 859

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 103/297 (34%), Gaps = 33/297 (11%)

Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297
             + +    RG F  R +  ++++ +    I++            I+++  L+ A +   
Sbjct: 240 GSLLAGAKYRGEFEERLKAVLKDLAKHEGEIIL-----------FIDELHTLVGAGKGDG 288

Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             D  +     +         +   D   + I   + +E RF     ++    V   + +
Sbjct: 289 AMDAGNMLKPALARGELRCVGATTLDEYRQYIEKDAALERRF--QKVLVDEPSVEDTIAI 346

Query: 358 DGILKEWLA-HRREVLFRRSSFRMQAIDRRVEILKGL-LIAYLNIDEIIAIIRNEDKPKP 415
              LKE  A H    +   +      +  R    + L   A   IDE  + I+ E   KP
Sbjct: 347 LRGLKEKYATHHGVQILDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMEIDSKP 406

Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475
             + +      Q    L ++L +++K E+   K+E+ +L  +  ++    N  ++ W   
Sbjct: 407 EALDKLDRRLIQ----LKMQLEAVKKDEDAGSKAEVTHLEKQIAEVQKEYNDLEEVWKSE 462

Query: 476 AC----------EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522
                       E+ + +  F K+   G       E +R     + +   + E   V
Sbjct: 463 KTLVEGTKQAQVELDKARIAFEKAQREGD----LAEAARLQYGVIPELQKQLEQDEV 515


>gi|301622857|ref|XP_002940744.1| PREDICTED: melanoma inhibitory activity protein 3 [Xenopus
           (Silurana) tropicalis]
          Length = 1116

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 87/262 (33%), Gaps = 12/262 (4%)

Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLEDIRDESAEDVRIVLFPKNRSLDP 322
             C+ V    YQV + +L EKIA L+  K   +  + +   +  E          +S D 
Sbjct: 275 RTCLSVKSRVYQVNEKQLAEKIANLVKEKSEALEKISECEKKIKEAKESESTTLKKSTDL 334

Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382
                ++             ++      +  ++      K+      E        + + 
Sbjct: 335 LAEAAALKATIKELKDSNKALDSKMRNIMNDLVSQKEQSKKKQEMINEGQKSIEKLQDKF 394

Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442
           ++  VE+ + L  A   +    A +RNE +      SR   T+ Q+       L+     
Sbjct: 395 LEHTVELSE-LQAALNEVKLKEAKVRNELRGVKDENSRLKETKEQL-------LKEAEGW 446

Query: 443 -EEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500
            E  +   E   L  +  + ++  L   + +   +   I ++K++ + ST +        
Sbjct: 447 SERQRELDEQIQLQQKSHKDLEETLAYKENEIEVLTNCIMQLKQLEADSTLVEDGNWQQA 506

Query: 501 EVSRADKATLQQAMIEKEPITV 522
                    + +   EK  + +
Sbjct: 507 GDGELANGEVPEKQKEKMKVQI 528


>gi|313232075|emb|CBY09186.1| unnamed protein product [Oikopleura dioica]
          Length = 696

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 75/270 (27%), Gaps = 23/270 (8%)

Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR----RSSFRMQAIDRRVEILKGLL 394
           F L             + ++   +  LA  + +  R         +   +  +       
Sbjct: 11  FLLKFYQPEKREHNFYLDMEENCRVTLAFYKFLKKRCSPEEFMNILNEANSDLHEDVTEE 70

Query: 395 IAYLNID----EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS----LRKLEEYQ 446
           +  L++D      +  I   DKP+   +    L  +  DAI  ++L+        L+   
Sbjct: 71  LKILHMDIMHINDLFQIDFGDKPEE-WIYSIGLDNDHADAIFAMKLQRAFIEFENLDIGL 129

Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506
                ++     E   S L             + E  ++       G  R         +
Sbjct: 130 RLQLGESTKHWIENHFSHLVPESGHEELDENTLEEESDL----EMSGDFRLPMPVTKARE 185

Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566
           +       +  E +       G+   L+     + +      + L   L  + T    + 
Sbjct: 186 ETVRFAKKMSDEKV------DGFTEMLQILKKYMKSGPSIAVEFLAHLLMCNKTSIWDVF 239

Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596
           +      +L A     GRG      L + L
Sbjct: 240 NHHFHEISLLASTQQDGRGTKPLRVLALRL 269


>gi|297478319|ref|XP_002690008.1| PREDICTED: centrosomal protein 110kDa [Bos taurus]
 gi|296484321|gb|DAA26436.1| centrosomal protein 110kDa [Bos taurus]
          Length = 2338

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 76/232 (32%), Gaps = 13/232 (5%)

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
            ++I +       ++   K    + + L  +I      +     N+  L   +     +  
Sbjct: 1353 KEIEELHHNIDELLQEKKGLEHEVEELHRTIQKHQQRKDFIDGNVESLMNELEIEKSLKH 1412

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY---------LNIDEIIAII 407
             + I+ E     + +L RR+   ++  DR +   +  L               D    ++
Sbjct: 1413 HEDIVDEIECIEKTLLKRRA--ELREADRLLAEAESELSCTTEKTKNAVEKFTDAKRNLL 1470

Query: 408  RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
            + E   + +         + V A   LRL      +  Q ++E + +L E  K+ +  +S
Sbjct: 1471 QTEKDAEELERRAQETAVSLVKADQQLRLLQADTKDLEQHRTEQEEILKEINKVVAAKDS 1530

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
              Q  N    ++ E  +   K  +   R          +   L QA   +  
Sbjct: 1531 DFQCLNTKKEKLTEELQKLQKDIETAVRTEDHHLQVLRESEALLQAKRAELD 1582


>gi|1000094|gb|AAA82935.1| mitosin [Homo sapiens]
          Length = 3113

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 884  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKEL 943

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 944  QLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYI 1003

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q   IL L+           +  +      +  K++ LLN     
Sbjct: 1004 DEREKSISELSDQYKQEKLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1062

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                  E+ ++KE F+K       +  F E    +     + + +
Sbjct: 1063 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQ 1107


>gi|82540574|ref|XP_724595.1| rhoptry protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479289|gb|EAA16160.1| rhoptry protein, putative [Plasmodium yoelii yoelii]
          Length = 2823

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 97/269 (36%), Gaps = 26/269 (9%)

Query: 279  KSRLIEKIAELIIAKR-----IPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF--M 331
                  KI++L+         +  +   ++E+ ++  I+L  KN  L  + +   +   +
Sbjct: 2031 DEEWENKISKLMEENEKIKKDMEKIYKEKNETKKEYEILLEEKN-GLKAENINNILKIKL 2089

Query: 332  LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391
            L D  T+F  +   L +        +    ++     + +L        + ++ ++ I  
Sbjct: 2090 LKDEITKFNNSRTELEIELENSKTNIMQKNEDINN--KNILIDELVSEQKILEEKIFIYN 2147

Query: 392  GLLIAYLNID-----------EIIAIIRNED-KPKPVMVSRFSLTENQVDAI--LNLRLR 437
              +    + D           EI  I+ ++D +   +  + ++L E     I   ++  +
Sbjct: 2148 AKIKEIESKDIENNNLKIEISEIKNIMNSKDIEICEIKTNEYALREEIKKYINMADVDKQ 2207

Query: 438  SLRKL--EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495
             +  L  E    +++L+++  E +K  +   + + + ++I  E+   +    K      +
Sbjct: 2208 RINNLMKEVDIYRTDLESINLEVKKYQNEAKAHEDESDKIKKELDAYRHEIEKIRAESNK 2267

Query: 496  RTTFCEVSRADKATLQQAMIEKEPITVVI 524
                    + +   L++   E +      
Sbjct: 2268 IDEENNKYKNEINLLRKDNDELKNKVAYF 2296


>gi|327277730|ref|XP_003223616.1| PREDICTED: desmoplakin-like [Anolis carolinensis]
          Length = 2867

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 372  LFRRSSFRMQAIDRRVEILKGLLIAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430
            + R++     +  + ++   G +    + I  +   I +E + + ++  R+   +   D 
Sbjct: 1090 MKRQAEMDGSSAKQNLDKCYGQIKDLNDRITRLTYEIEDEKRKRKLLEDRYEQQKTDFDQ 1149

Query: 431  ILNLRLRSLRKLEEYQIKSEL--DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            +   R      L   +I++E        E E++  LL     +  +   E+ +V+  F++
Sbjct: 1150 LQKTRQNEKEGLGRQKIETEKIVKEKEYEIERLRVLLQDEGTRKREYENELAKVRNQFNE 1209

Query: 489  S 489
             
Sbjct: 1210 E 1210


>gi|301770977|ref|XP_002920908.1| PREDICTED: cytospin-B-like [Ailuropoda melanoleuca]
          Length = 1068

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 102/312 (32%), Gaps = 23/312 (7%)

Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248
            ++P   + E+ +    ++D      EKLL            +  E++ ++     L   
Sbjct: 456 PNMPEGKILELEQKCAEILDQGRFEREKLLNIQQQLTCSLRKVEEENQGALDMIKHLKEE 515

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE-KIAELIIAKRIPLLEDIRDESAE 307
             ++     +E    G     + E    ++  ++    +   +  ++    E        
Sbjct: 516 NEKLNGFLDLERRNSGVMAKSLEECKATLEGLQVENGSLKAHLENEKQKATETSPAGHTA 575

Query: 308 DVRIVLFPKN--RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
           + R V       R+    L +    +  ++        +V S+  + +V      LKE  
Sbjct: 576 EGREVQEMLRVTRAEKDQLELSCTELKQELVKAHGEIKHVSSL--LAKVEKDYSYLKEIC 633

Query: 366 AHRREVLFRRSSFRMQAI-DRRVEILKGLLIAYLNIDEIIA----IIRNEDKPKPVMVSR 420
            H+ E L R S    +   +   EI       +   D++       + N      +  + 
Sbjct: 634 DHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHNNQLISELESNV 693

Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID-------SLLNSGKQQWN 473
             L E + D  L  +L++L K    QIK E +     +  +         +    +Q+  
Sbjct: 694 MKLEEQKSD--LERQLKTLTK----QIKEETEEWRRFQADLQTAVVVANDIKCEAQQELR 747

Query: 474 QIACEIREVKEI 485
            +   + E +E 
Sbjct: 748 SVKRRLLEEEEK 759


>gi|332679035|gb|AEE88164.1| ClpB protein [Francisella cf. novicida Fx1]
          Length = 859

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 21/148 (14%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            A   +DE  + IR E   KP  +        Q    L ++   L+K ++   K  L+ L
Sbjct: 389 KAIDLVDEAASQIRMEIDSKPEKMESLYRRIIQ----LKMQREQLKKEKDEATKKRLEIL 444

Query: 455 LAEKEKIDSLLNSGKQQWN----------QIACEIREVKEIFSKSTDLGRRRTT------ 498
             E + ++S     ++ W           ++  E+ + K    K    G           
Sbjct: 445 EEEIKGLESEYKGFEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRAGDLSKMAELQYG 504

Query: 499 -FCEVSRADKATLQQAMIEKEPITVVIS 525
              E+    K          E   V  S
Sbjct: 505 KIPELEAQIKQIENTEAEPSENKLVRTS 532


>gi|119901005|ref|XP_598421.3| PREDICTED: centrosomal protein 110kDa [Bos taurus]
          Length = 2338

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 76/232 (32%), Gaps = 13/232 (5%)

Query: 299  EDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRVPQVMP 356
            ++I +       ++   K    + + L  +I      +     N+  L   +     +  
Sbjct: 1353 KEIEELHHNIDELLQEKKGLEHEVEELHRTIQKHQQRKDFIDGNVESLMNELEIEKSLKH 1412

Query: 357  LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAY---------LNIDEIIAII 407
             + I+ E     + +L RR+   ++  DR +   +  L               D    ++
Sbjct: 1413 HEDIVDEIECIEKTLLKRRA--ELREADRLLAEAESELSCTTEKTKNAVEKFTDAKRNLL 1470

Query: 408  RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467
            + E   + +         + V A   LRL      +  Q ++E + +L E  K+ +  +S
Sbjct: 1471 QTEKDAEELERRAQETAVSLVKADQQLRLLQADTKDLEQHRTEQEEILKEINKVVAAKDS 1530

Query: 468  GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519
              Q  N    ++ E  +   K  +   R          +   L QA   +  
Sbjct: 1531 DFQCLNTKKEKLTEELQKLQKDIETAVRTEDHHLQVLRESEALLQAKRAELD 1582


>gi|118388510|ref|XP_001027352.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89309122|gb|EAS07110.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1110

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 90/285 (31%), Gaps = 23/285 (8%)

Query: 291  IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             +  +    +  D+  E ++  +   ++ +  +      +   D +    +   +     
Sbjct: 793  QSGNLEETIEDIDQELEHLKQKIDVIDKKIVQNGGKNQGWTNQDQQDFLKIRAFLNDCLS 852

Query: 351  VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
            +  +     I +     ++ + F      +    + ++  +  +       E +   + +
Sbjct: 853  ILGMFDEQQIREHIDKFQKYLQFEEDKKSLMQTYKDLKEKRKEIQLEQIRKEEVNQNQKK 912

Query: 411  DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE-----------------EYQIKSELDN 453
               +        L E Q + IL  +L+   K E                 E   +++L+ 
Sbjct: 913  QLEEQQKKQTTILREKQKEEILQWKLKKQAKEEVKSESAKMMLDEEQRERERIRRAQLEE 972

Query: 454  LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513
                 E+   +    K +  +     + + +    S+D  R +    E+ +  +   ++ 
Sbjct: 973  QKRLVEEYKQIKEVEKMRQKEREEYEKSISKRLITSSDKERIKQKEEEMIKKKQEIAKKQ 1032

Query: 514  MIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLK 552
             + KE   V       ++  K   V        +A   KEG+ ++
Sbjct: 1033 QLLKEESQVKKQKHDELKQTKYAYVPSKLNEKTTASKMKEGEKVE 1077


>gi|20091902|ref|NP_617977.1| hypothetical protein MA3084 [Methanosarcina acetivorans C2A]
 gi|19917099|gb|AAM06457.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 306

 Score = 37.4 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL---DNLLAEKEKIDSLLNSGKQQWNQ 474
               SL E     +  LR   L+ L+  ++K  +          E ++ L  S K+   +
Sbjct: 12  NWMNSLKELGFKGLKELRDSGLKNLKASELKDLILKPKTADVNIEDMEDLTKSRKEVKKK 71

Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534
           I   ++E KEI ++     +  T   E         +        + V +S    + +  
Sbjct: 72  IKRLLKEKKEIEARIERAQQLETEKIEEISEFPWREEIFPPLPRKVYVKMSRPLEVNNDS 131

Query: 535 SHSVDLSALHFKEG 548
            H+ +      K G
Sbjct: 132 FHAAEPGVSEVKAG 145


>gi|119613756|gb|EAW93350.1| centromere protein F, 350/400ka (mitosin) [Homo sapiens]
          Length = 3114

 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 885  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKEL 944

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 945  QLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYI 1004

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q   IL L+           +  +      +  K++ LLN     
Sbjct: 1005 DEREKSISELSDQYKQEKLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1063

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                  E+ ++KE F+K       +  F E    +     + + +
Sbjct: 1064 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQ 1108


>gi|91085069|ref|XP_966818.1| PREDICTED: similar to CG3493 CG3493-PA [Tribolium castaneum]
          Length = 1398

 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 7/232 (3%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE---S 305
            +   AR  +E + +    +    I +Q ++     KI  L     +    +  +    +
Sbjct: 223 KYLTDARVEIENLNQRIQEMKANSIIFQTKEQEYKAKITNLEKEIALFSEREKENNLSLA 282

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              + +     ++  +   L +S+  L+    +F       +                  
Sbjct: 283 QNKMELHNELLSKDAEISNLKKSLEALTGGTGKFENLQTQNTKLIEKLEALTQKCNNYEN 342

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI----IAIIRNEDKPKPVMVSRF 421
              +    RR +     + + ++ ++G L       +     +     E   K       
Sbjct: 343 KLLKMEQLRRENEENSRLKKEIQDIQGQLEGVREEAKKSLLSLETKIREKLAKEFEEKEE 402

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            L  +    I  +   S  +    +++ E+  L    + I   L S   +++
Sbjct: 403 RLRSDFRKKIEEVSSSSSNEFNLLEMEEEIRKLRQVNDGILEQLTSKTTKYD 454


>gi|270008505|gb|EFA04953.1| hypothetical protein TcasGA2_TC015021 [Tribolium castaneum]
          Length = 1401

 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 7/232 (3%)

Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE---S 305
            +   AR  +E + +    +    I +Q ++     KI  L     +    +  +    +
Sbjct: 223 KYLTDARVEIENLNQRIQEMKANSIIFQTKEQEYKAKITNLEKEIALFSEREKENNLSLA 282

Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365
              + +     ++  +   L +S+  L+    +F       +                  
Sbjct: 283 QNKMELHNELLSKDAEISNLKKSLEALTGGTGKFENLQTQNTKLIEKLEALTQKCNNYEN 342

Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI----IAIIRNEDKPKPVMVSRF 421
              +    RR +     + + ++ ++G L       +     +     E   K       
Sbjct: 343 KLLKMEQLRRENEENSRLKKEIQDIQGQLEGVREEAKKSLLSLETKIREKLAKEFEEKEE 402

Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473
            L  +    I  +   S  +    +++ E+  L    + I   L S   +++
Sbjct: 403 RLRSDFRKKIEEVSSSSSNEFNLLEMEEEIRKLRQVNDGILEQLTSKTTKYD 454


>gi|195484008|ref|XP_002090524.1| GE13167 [Drosophila yakuba]
 gi|194176625|gb|EDW90236.1| GE13167 [Drosophila yakuba]
          Length = 1410

 Score = 37.4 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 81/214 (37%), Gaps = 14/214 (6%)

Query: 292 AKRIPLLEDIRDESAEDVRI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
            +R+  L D R E     ++     K+     +  ++ +   +++      ++  +   +
Sbjct: 276 NQRVDQLTDDRTEKHNRCKLAEREMKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIK 335

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
             ++       +  +   +      ++ +++  ++   I++  + AY  + +    I+  
Sbjct: 336 KGKLEQYTQEHEACVEELKTHDEGTAALKLERAEKET-IIRKEIEAYEALVKKREQIK-- 392

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA-------EKEKIDS 463
              K ++    + TE Q       + R   K +  + + EL++L         E E  ++
Sbjct: 393 ---KRLVTVESAYTEIQSTMENTNKQRKKDKAQIEKNEKELEDLHKLPEKNQREIEDCNN 449

Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497
            L S ++    ++ E+ + +   +K+T     + 
Sbjct: 450 KLESLEKNKVTLSEELEKQQAELTKTTAPLTEKR 483


>gi|224085002|ref|XP_002195849.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           1 [Taeniopygia guttata]
          Length = 1142

 Score = 37.4 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 102/299 (34%), Gaps = 17/299 (5%)

Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII-AKRIPLLEDIRDESAEDVRIVLFPKN 317
           E++G     ++ +E      +  L E +A+     +RI  LE     +  +   +    +
Sbjct: 263 EDLGTARKDLIKSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLND 322

Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377
           +  +     ES+    + + R    +  L+  ++ Q M     L E  A     L +R +
Sbjct: 323 KLENELANKESLHRQCEEKARHLQELLELAEQKLQQTMRKAETLPEVEA----ELAQRIA 378

Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN---- 433
              +A +R   I + L      ++E    +    + + +         + VD +L+    
Sbjct: 379 ALTKAKERHGSIEEHLRQLETQLEEKNQELARARQREKMNEEHNKRLSDTVDRLLSESNE 438

Query: 434 -LRLR---SLRKLEEYQ-IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488
            L+L     +  LEE   +  EL+N   + E+          + +++  E+ ++K     
Sbjct: 439 RLQLHLKERMAALEEKNTLLQELENTQKQIEEHQHDKRRLSDEIDKLRLEVDQLKTRSGT 498

Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547
             +    R+     +              EP     +  G  R+ K           K+
Sbjct: 499 FVESVHTRSHMGSATDLRFPLGAVVHAPAEP---FGTAPGLPRAQKGRFSARREEPAKD 554


>gi|53133231|emb|CAG31974.1| hypothetical protein RCJMB04_14p23 [Gallus gallus]
          Length = 399

 Score = 37.4 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 94/265 (35%), Gaps = 29/265 (10%)

Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307
           G   V+     E++ +    + + E   Q +++ +I K+   +   R    +   + S  
Sbjct: 137 GRLTVQMNELQEQLSQHRDSMQLQETTIQ-EQNEVIRKLTSCLQQTRKDWDDLQEEASHV 195

Query: 308 DVRIV----------LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357
             +I           +  K++      ++E+   +S  ++        L M         
Sbjct: 196 ADQIHGLQLQLHEVNVMLKSKGSGKKEVLEAQQQMSLFQSSLQEQNARLEMLHQRAYDLE 255

Query: 358 DGILK----EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413
             +          H RE+    +  + +  + R E+ K  L     + + +A     +  
Sbjct: 256 VQLESSQKVHEREHDREISELIAKHKEEMEELRAELHKEKLHLLDELQQQMAATHKAEIE 315

Query: 414 KPVMVSRFSLTENQVDAI-----------LNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462
              + S  +L   +++A+           L L   +LRK +E  +    + L  ++ +  
Sbjct: 316 YAQLQS-QTLHSLELEALRLSLNNLHTSQLELTQSNLRKEKETALVELREMLNDKRAQEI 374

Query: 463 SLLNSGKQQ-WNQIACE-IREVKEI 485
           ++L S  Q  W +I    ++E K+ 
Sbjct: 375 AILQSRHQLEWEKIKERCLKEKKKK 399


>gi|55770834|ref|NP_057427.3| centromere protein F [Homo sapiens]
 gi|55665115|emb|CAH71810.1| centromere protein F, 350/400ka (mitosin) [Homo sapiens]
 gi|55665176|emb|CAH73032.1| centromere protein F, 350/400ka (mitosin) [Homo sapiens]
 gi|225000696|gb|AAI72232.1| Centromere protein F, 350/400ka (mitosin) [synthetic construct]
          Length = 3114

 Score = 37.4 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 7/225 (3%)

Query: 298  LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF-----MLSDMETRFPLNMNVLSMGRVP 352
            +  ++++++    +V    +   + +  ++ +        ++++     N  +    +  
Sbjct: 885  ISKLQEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKEL 944

Query: 353  QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV-EILKGLLIAYLNIDEIIAIIRNED 411
            Q++     L++        L +R    +   +  + EI   L    +N+ +      N  
Sbjct: 945  QLLSETLSLEKKEMSSIISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYI 1004

Query: 412  KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471
              +   +S  S    Q   IL L+           +  +      +  K++ LLN     
Sbjct: 1005 DEREKSISELSDQYKQEKLIL-LQRCEETGNAYEDLSQKYKAAQEKNSKLECLLNECTSL 1063

Query: 472  WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516
                  E+ ++KE F+K       +  F E    +     + + +
Sbjct: 1064 CENRKNELEQLKEAFAKEHQEFLTKLAFAEERNQNLMLELETVQQ 1108


>gi|46446720|ref|YP_008085.1| hypothetical protein pc1086 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400361|emb|CAF23810.1| hypothetical protein pc1086 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 365

 Score = 37.4 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 5/193 (2%)

Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386
           E I  +         N   L    +        ++KE      E    +  +       R
Sbjct: 27  EVIEKIIKENGILRTNNEHLHSQIIHLTEGQQEVVKENRQISTEYQTLKDKYEEVQTQLR 86

Query: 387 VEILKGLLIAYLNIDEIIAIIRN-EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445
            E+    +  Y   DE+ A I    ++ K +  S     E      LN +LR +   E  
Sbjct: 87  -EMENMFVRFYEERDELNAKIEKLSEEKKTLEGSNHQKDEVIHK--LNGQLRDVTH-ERD 142

Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505
             +  +D L  E  ++ +   + +++  Q+  E +++++   ++T+   +     ++   
Sbjct: 143 AKQRTIDELQKEIVRLTNENKNKERENGQLTAEKQQLQQEKDQTTNDNLQLLDQNQLLNR 202

Query: 506 DKATLQQAMIEKE 518
           D   L+++  E E
Sbjct: 203 DNWQLRESKNELE 215


>gi|221129633|ref|XP_002167119.1| PREDICTED: similar to coiled-coil domain containing 148 [Hydra
           magnipapillata]
          Length = 570

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426
            + + L + + F+ +  +  +           N+ E +   ++E       +    L E 
Sbjct: 314 FQVKHLIKEAQFKYEENEEIISRNMEQKFICKNLHEKLRKYQDE-------MEEIFLLEE 366

Query: 427 QVDAILNLRLR-SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
           +  A++  + R  L KL+  + K +    +      + +    ++   Q A  + E+++ 
Sbjct: 367 KQRALVEEKERKRLEKLKNLENKRKEQLKIQLITYKEEIEKKAERIKTQDALRLLELQDQ 426

Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527
            +K   +   R  + E     K   ++ + + +   +  + R
Sbjct: 427 RAKQRLVDEERIRYREEIYHQKLMKRKQIEKLKEKKIEATER 468


>gi|183233803|ref|XP_001913918.1| intracellular protein transport protein USO1 [Entamoeba histolytica
           HM-1:IMSS]
 gi|169801399|gb|EDS89306.1| intracellular protein transport protein USO1, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 915

 Score = 37.4 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 291 IAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350
             +R+  L  IRDE+  D R V   + R +            +  E  F    +     +
Sbjct: 483 NKERMNTLRKIRDEAERDGRAVQMEEFREMREKQND---IKNTIRELEFNRKESNKQEQK 539

Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410
              +M L         H  + + +    R +   R  ++    +    NI +       E
Sbjct: 540 NIALMALQPGNCYKRRHLWKKIKKIQEIRKEISKRIDKLSLKYIKITQNIKKEEEKSSQE 599

Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470
            K +   +        ++     ++L+      E + + EL+ +   K+ I S+      
Sbjct: 600 LKEENQRLIEKKKNIIKIIKESQMKLKKQN--NEKRYREELEKINELKDDIKSINERIIN 657

Query: 471 QWNQIACE-----IREVKEIF--------SKSTDLGRRRTTFCEVS 503
             +++        +R+ +E +        +    +  RR    E+S
Sbjct: 658 VRSEMRRNSAELLLRKYEEKYLIKHSLYKNSKEKMSERRREIAEIS 703


>gi|326665506|ref|XP_691419.5| PREDICTED: hypothetical protein LOC562960 [Danio rerio]
          Length = 2900

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 89/281 (31%), Gaps = 40/281 (14%)

Query: 276  QVQKSRLIEKIAELIIA-----KRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIF 330
            + Q S L+EKI  ++ A         +  ++  E  E    +L  + R  + ++      
Sbjct: 773  RTQVSDLLEKIDNMVKANGGSFYSCKMFREMEREKQEQQMKILMDRVRETEEEMKKLEEE 832

Query: 331  MLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEIL 390
                +E                    +    K     R E+   R +FR +  + R +  
Sbjct: 833  KDRMIEEERQNQEKDRKRREEELKREIREQEKHQREMREEMKKDRETFRHEIDEMRKDKE 892

Query: 391  KGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTENQVDA-ILNL----------- 434
            K         D +   I NE    D  +      F + E Q  A +  +           
Sbjct: 893  KLQCKYEKETDLLKNSIENERQNHDDYRKRREEEFKVREQQYKAQLTEMEREVQEKINKE 952

Query: 435  -----------------RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477
                             +L+S  K EE ++K  ++ L  E+E++   L+  K++   I  
Sbjct: 953  GSEKLKQERERMERETEKLQSTYKEEENKMKRMMEELNREREELMKNLDEEKRRLKTIIE 1012

Query: 478  EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518
            E  E      +       +    E  +  + T  +   E+E
Sbjct: 1013 E--ESLNRDKERKRQEELKQEIREQEKHQRETRDEMKRERE 1051


>gi|256052226|ref|XP_002569676.1| hypothetical protein [Schistosoma mansoni]
 gi|227284382|emb|CAY16924.1| WD-repeat protein, putative [Schistosoma mansoni]
          Length = 1331

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 85/218 (38%), Gaps = 13/218 (5%)

Query: 272  EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFM 331
            EI Y+ Q + +      L+    I   E   +E  + +  ++    + L+   L++S+  
Sbjct: 839  EINYEKQLNNIQLNHENLLNNT-INNYELKLNEKNQKINELINQLKQQLNDHDLIKSLIE 897

Query: 332  LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR--SSFRMQAIDRRVEI 389
              + +    LN+    +      +         L  ++ +  ++      +      +EI
Sbjct: 898  HINDQEILQLNIKYKKLFNEELNLNKKLKNDLNLIQKQLINLQKIIDQLNLDKNKYNIEI 957

Query: 390  LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL--RSLRKLEEYQI 447
             K L     N+++ +  +  +      +  R    +++   IL+L+   + L K + Y +
Sbjct: 958  QK-LNTIIFNLEKDLQNLHKD------IQERDDTIQDKEKRILDLKKKNQELEKFK-YVL 1009

Query: 448  KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485
              ++  L  + E  ++ + + K+Q  ++  E++   + 
Sbjct: 1010 DYKIKELKQQIEPRENDIKNYKEQIQEMETELQRFHKQ 1047


>gi|324501957|gb|ADY40866.1| Structural maintenance of chromosomes protein 2 [Ascaris suum]
          Length = 786

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 2/125 (1%)

Query: 393 LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE--YQIKSE 450
           +  A    DE+ A I   D  K    +     + Q    L    + L  L++   + + E
Sbjct: 333 IKEASSQRDELRAKIAELDDRKKNEKAFQEREKKQAQKELARAEKELMNLKKGFEEARRE 392

Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510
           LD+L  +   + + L + + + N +   I E      +         +       +    
Sbjct: 393 LDSLREDIAMLRNSLGNDEAELNALLESIAEGVGKLGEIEKEVATAKSVLREGNREMEAF 452

Query: 511 QQAMI 515
            + M 
Sbjct: 453 NERMR 457


>gi|296223213|ref|XP_002757532.1| PREDICTED: GRIP and coiled-coil domain-containing protein 2, partial
            [Callithrix jacchus]
          Length = 1614

 Score = 37.4 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 66/214 (30%), Gaps = 27/214 (12%)

Query: 304  ESAEDVRIVLFPKNRSLDPDLLME----SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359
            E  +    +   K R+ + +  +E     +   +    +   +   L             
Sbjct: 955  EYDKQSEQLDVEKERANNFEHHIEDLSRQLRNSTLQCEKLNSDNEDLLARIETLQSNAKL 1014

Query: 360  ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419
            +  + L  +R           + + +  +I +    A   ++E+   ++ E K     + 
Sbjct: 1015 LEVQLLEVQRTKAIVDKELEAEKLQKEQKIKEH-ATAVNELEELRIQLQKEKKQLQKTMQ 1073

Query: 420  RFSLTENQVDA--ILNLRLRSLRKL--------------------EEYQIKSELDNLLAE 457
               L +       ++N+ +    +L                    E    K + + L  E
Sbjct: 1074 ELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIDDLEQEIKIQKQKQETLQEE 1133

Query: 458  KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491
               + +L+   +++  +I   + + K+  + S  
Sbjct: 1134 ITSLQALVQQYEEKNTKIKQLLVKTKKELADSKQ 1167


>gi|328715465|ref|XP_001942635.2| PREDICTED: TATA element modulatory factor-like [Acyrthosiphon
           pisum]
          Length = 1049

 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 86/245 (35%), Gaps = 20/245 (8%)

Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322
           +G    V+ E+     + +LIEK  + +  + +      +++  E++ IV+     +L  
Sbjct: 653 QGKETAVI-ELKKDSNELKLIEKDKQDLEERLL-----NKNKHCEEMEIVISNLKSNLCK 706

Query: 323 DLLMESIFMLSDMETRFPLNMNVLS------MGRVPQVMPLDGILKEWLAHRREVLFRRS 376
                 + M    +    L   +              +     ++KE       +     
Sbjct: 707 VEENNYVLMNELKQENLSLIRRLEESERRRENSLQETLKATQPLVKELEEKSVLIKTLEH 766

Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433
            F  + +     I + L  +  N +  I +I    +E                Q ++ L 
Sbjct: 767 EFEKRELLHLKTIDE-LQTSLNNAENKIKLIESKIHESNTFGKKCREQIDNLLQNESELK 825

Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQWNQIACEIREVKEIFSKST 490
           ++L SL K E   +K   +NL+  + ++     LL     + N +  E++  K+  +   
Sbjct: 826 VKLESL-KEENATLKLNSNNLVKLENELAGSKKLLADATLKINTLENELKFEKDKLNVEI 884

Query: 491 DLGRR 495
           +  ++
Sbjct: 885 EKRKK 889


>gi|148652685|ref|YP_001279778.1| ATPase [Psychrobacter sp. PRwf-1]
 gi|148571769|gb|ABQ93828.1| ATPase AAA-2 domain protein [Psychrobacter sp. PRwf-1]
          Length = 862

 Score = 37.4 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 23/173 (13%)

Query: 395 IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454
            A   +DE  + +R E   KP  + +      Q    L ++   L+  E+   ++E   L
Sbjct: 386 KAIDLVDEAASRLRMEMDSKPEALGKLDSRLIQ----LKMQREVLKNEEDAGAQAERKVL 441

Query: 455 LAEKEKIDSLLNSGKQQW----------NQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504
             + E+++       + W           Q+  E+ + +  + K++  G   T       
Sbjct: 442 DEQIEELEKEYADLNEIWQAEKALVKGSQQLKDELDKARIAYDKASREGDYET------- 494

Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557
              + LQ   I +    +  S+    +        +  L  K  D+    + A
Sbjct: 495 --MSKLQYETIPQLEKRITESDLAEQKEQTGEGNGIKLLRNKVTDNEIAEVVA 545


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.127    0.318 

Lambda     K      H
   0.267   0.0392    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,643,546,951
Number of Sequences: 14124377
Number of extensions: 450280633
Number of successful extensions: 1636336
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 13244
Number of HSP's successfully gapped in prelim test: 4321
Number of HSP's that attempted gapping in prelim test: 1530089
Number of HSP's gapped (non-prelim): 32796
length of query: 753
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 606
effective length of database: 2,766,510,211
effective search space: 1676505187866
effective search space used: 1676505187866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 85 (37.4 bits)